Sequence Modifications Mass Mass Fractional Part Protein Groups Proteins Gene Names Protein Names Unique (Groups) Unique (Proteins) Acetyl (Protein N-term) Oxidation (M) Missed cleavages Identification type K12_SUP_PD04_rep01 Identification type K12_SUP_PD04_rep02 Identification type K12_SUP_PD04_rep03 Identification type K12_TEV_PD04_rep01 Identification type K12_TEV_PD04_rep02 Identification type K12_TEV_PD04_rep03 Identification type NUSG_SUP_PD04_rep01 Identification type NUSG_SUP_PD04_rep02 Identification type NUSG_SUP_PD04_rep03 Identification type NUSG_TEV_PD04_rep01 Identification type NUSG_TEV_PD04_rep02 Identification type NUSG_TEV_PD04_rep03 Identification type RPOB_SUP_PD04_rep01 Identification type RPOB_SUP_PD04_rep02 Identification type RPOB_SUP_PD04_rep03 Identification type RPOB_TEV_PD04_rep01 Identification type RPOB_TEV_PD04_rep02 Identification type RPOB_TEV_PD04_rep03 Identification type YACL_SUP_PD04_rep01 Identification type YACL_SUP_PD04_rep02 Identification type YACL_SUP_PD04_rep03 Identification type YACL_TEV_PD04_rep01 Identification type YACL_TEV_PD04_rep02 Identification type YACL_TEV_PD04_rep03 Experiment K12_SUP_PD04_rep01 Experiment K12_SUP_PD04_rep02 Experiment K12_SUP_PD04_rep03 Experiment K12_TEV_PD04_rep01 Experiment K12_TEV_PD04_rep02 Experiment K12_TEV_PD04_rep03 Experiment NUSG_SUP_PD04_rep01 Experiment NUSG_SUP_PD04_rep02 Experiment NUSG_SUP_PD04_rep03 Experiment NUSG_TEV_PD04_rep01 Experiment NUSG_TEV_PD04_rep02 Experiment NUSG_TEV_PD04_rep03 Experiment RPOB_SUP_PD04_rep01 Experiment RPOB_SUP_PD04_rep02 Experiment RPOB_SUP_PD04_rep03 Experiment RPOB_TEV_PD04_rep01 Experiment RPOB_TEV_PD04_rep02 Experiment RPOB_TEV_PD04_rep03 Experiment YACL_SUP_PD04_rep01 Experiment YACL_SUP_PD04_rep02 Experiment YACL_SUP_PD04_rep03 Experiment YACL_TEV_PD04_rep01 Experiment YACL_TEV_PD04_rep02 Experiment YACL_TEV_PD04_rep03 Retention time Calibrated retention time Charges PEP MS/MS scan number Raw file Score Delta score Intensity Intensity K12_SUP_PD04_rep01 Intensity K12_SUP_PD04_rep02 Intensity K12_SUP_PD04_rep03 Intensity K12_TEV_PD04_rep01 Intensity K12_TEV_PD04_rep02 Intensity K12_TEV_PD04_rep03 Intensity NUSG_SUP_PD04_rep01 Intensity NUSG_SUP_PD04_rep02 Intensity NUSG_SUP_PD04_rep03 Intensity NUSG_TEV_PD04_rep01 Intensity NUSG_TEV_PD04_rep02 Intensity NUSG_TEV_PD04_rep03 Intensity RPOB_SUP_PD04_rep01 Intensity RPOB_SUP_PD04_rep02 Intensity RPOB_SUP_PD04_rep03 Intensity RPOB_TEV_PD04_rep01 Intensity RPOB_TEV_PD04_rep02 Intensity RPOB_TEV_PD04_rep03 Intensity YACL_SUP_PD04_rep01 Intensity YACL_SUP_PD04_rep02 Intensity YACL_SUP_PD04_rep03 Intensity YACL_TEV_PD04_rep01 Intensity YACL_TEV_PD04_rep02 Intensity YACL_TEV_PD04_rep03 Reverse Potential contaminant id Protein group IDs Peptide ID Evidence IDs MS/MS IDs Best MS/MS Oxidation (M) site IDs MS/MS Count AAAAEIAVK Unmodified 842.48617 0.48616764 420 P0A8D6 ymdB O-acetyl-ADP-ribose deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.073 14.913 2 0.00069069 4850 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.74 58.658 315730000 49189000 42748000 41086000 0 0 0 39856000 40225000 32896000 0 0 0 14325000 14049000 11992000 0 0 0 0 15913000 13449000 0 0 0 0 420 0 0;1;2;3;4;5;6;7;8;9;10 0;1;2 1 3 AAAAKAEAAK Unmodified 900.50288 0.50288033 1994 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 2 1 1 14.565 14.803 2 0.017554 3839 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 64.567 5.9627 696200000 0 0 0 0 32294000 0 0 0 0 1017700 887260 879350 0 0 0 608690 548290 452240 0 0 591050000 34063000 16980000 17417000 + 1 1994 1 11;12;13;14;15;16;17;18;19;20;21;22 3 3 1 AAAANWLR Unmodified 871.46644 0.46643525 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 23.292 22.304 2 0.00062699 7709 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 129.96 120.72 63106000 0 0 0 0 0 0 9888200 0 0 9907300 4727600 8552600 0 0 0 0 0 0 11032000 0 13310000 2573100 0 3114800 2 143 2 23;24;25;26;27;28;29;30 4;5 4 1 AAAAPVTGPLADDPIQETITFDDFAK Unmodified 2673.3174 0.31737756 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 1 1 1 1 1 2 54.261 52.812 2;3 3.1063E-30 26087 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 214.54 202.34 800880000 41390000 94673000 46333000 0 0 0 46927000 40226000 86476000 0 0 0 53469000 50115000 65414000 0 0 0 61312000 73148000 141400000 0 0 0 3 60 3 31;32;33;34;35;36;37;38;39;40;41;42;43;44;45 6;7;8;9;10;11;12;13;14;15;16;17 7 10 AAADEWDER Unmodified 1061.4414 0.44140229 1269 P25738 msyB Acidic protein MsyB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.695 17.152 2 4.4453E-08 6254 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 194.44 190.09 3379300000 690230000 641930000 579460000 0 0 0 323970000 288100000 265980000 14800000 6394400 27821000 65536000 52168000 48735000 12348000 10786000 13187000 87406000 88325000 75963000 12094000 25164000 48891000 4 1269 4 46;47;48;49;50;51;52;53;54;55;56;57;58;59;60;61;62;63;64;65;66 18;19;20;21;22;23;24;25;26;27;28;29;30;31;32;33;34;35;36;37;38 24 21 AAADLISR Unmodified 815.45012 0.45011648 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.186 17.843 2 0.00022699 6476 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 151.29 81.909 1937300000 129950000 119690000 133920000 1619700 0 0 160180000 175160000 161110000 0 0 0 140450000 142810000 139590000 0 0 0 205470000 196080000 229290000 0 1991500 0 5 29 5 67;68;69;70;71;72;73;74;75;76;77;78;79;80 39;40;41;42;43;44;45;46;47;48;49;50 45 12 AAADVQLR Unmodified 842.46102 0.46101552 857 P0AEG4 dsbA Thiol:disulfide interchange protein DsbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.296 14.845 2 2.5058E-06 4702 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.22 126.56 4722600000 337250000 311400000 319190000 0 0 0 394850000 448390000 451220000 1553300 933470 1032600 350480000 319140000 281620000 879180 617030 819750 509320000 509510000 482290000 951820 0 1121900 6 857 6 81;82;83;84;85;86;87;88;89;90;91;92;93;94;95;96;97;98;99;100 51;52;53;54;55;56;57;58;59;60 58 10 AAAEADDIFGELSSGK Unmodified 1579.7366 0.73658126 1163 P19934 tolA Protein TolA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 42.373 40.802 2 2.3656E-06 19808 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 100.55 94.448 26221000 0 0 0 0 0 0 0 0 0 0 0 0 3049700 0 3748700 0 0 0 4700300 7324200 7397900 0 0 0 7 1163 7 101;102;103;104;105 61 61 1 AAAEGEMK Oxidation (M) 821.35892 0.35891821 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 1 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 3 2 2 2 2 4 3 3 6.4548 7.3215 2 0.0020239 1648 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.59 96.777 968300000 108050000 98263000 72175000 132370 0 0 106730000 142950000 123510000 0 0 0 8990000 9561400 47903000 0 0 0 93072000 83480000 73483000 0 0 0 8 504 8 106;107;108;109;110;111;112;113;114;115;116;117;118;119;120;121;122;123;124;125;126;127;128;129;130;131;132 62;63;64;65;66;67;68;69;70;71;72;73;74;75;76;77;78;79;80 65 306 19 AAAEGEMK Unmodified 805.364 0.36400359 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 2 5 1 1 1 1 1 1 1 1 1 1 1 9.1205 9.8196 2 0.0012398 1749 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.78 104.6 12467000000 1730300000 1801900000 1625900000 3094000 4658800 3344100 410950000 4396200 253140000 6043200 0 2386800 510420000 550150000 378910000 0 3808900 2456100 1787600000 1667200000 1720300000 0 0 0 9 504 8 133;134;135;136;137;138;139;140;141;142;143;144;145;146;147;148;149;150;151;152;153;154;155;156;157 81;82;83;84;85;86;87;88;89;90;91;92;93;94;95;96;97;98;99;100;101;102;103;104 87 24 AAAEKAAAAK Unmodified 900.50288 0.50288033 1163 P19934 tolA Protein TolA yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 13.492 14.579 2 0.045798 3453 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 58.604 0 93617000 0 0 0 34208000 27660000 31750000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 1163 9 158;159;160 105;106 105 2 AAAEMAESVTNPQRPPVIWIGAQECTGCTESLLR Unmodified 3741.7913 0.7912995 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 1 By MS/MS 1 48.3 46.794 4 0.081256 18512 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 31.056 29.492 5212200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5212200 11 1739 10 161 107 107 1 AAAEQSWSLSALTLPHPLVR Unmodified 2146.1535 0.15348753 435 P0A8I8 rlmH Ribosomal RNA large subunit methyltransferase H yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.721 47.39 3 1.1611E-05 23625 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 87.16 81.45 233630000 22329000 20674000 20082000 0 0 0 16807000 19048000 14574000 0 0 0 13767000 16286000 11213000 0 0 0 29890000 21059000 27904000 0 0 0 12 435 11 162;163;164;165;166;167;168;169;170;171;172;173 108;109;110;111;112;113;114 108 6 AAAESSIQVK Unmodified 1002.5346 0.53457439 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 3 2 2 1 1 2 7 6 7 3 2 2 2 1 3 14.062 14.481 2 1.224E-06 3794 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 167.24 147.54 37631000000 651320000 612250000 682410000 16768000 18687000 15186000 712850000 716520000 692020000 1484800000 819750000 2008400000 407120000 350260000 323520000 5341600000 5403100000 5428000000 815790000 802250000 661340000 3120100000 3183600000 3363500000 13 458 12 174;175;176;177;178;179;180;181;182;183;184;185;186;187;188;189;190;191;192;193;194;195;196;197;198;199;200;201;202;203;204;205;206;207;208;209;210;211;212;213;214;215;216;217;218;219;220;221;222;223;224;225;226;227;228;229;230;231;232;233 115;116;117;118;119;120;121;122;123;124;125;126;127;128;129;130;131;132;133;134;135;136;137;138;139;140;141;142;143;144;145;146;147;148;149;150;151;152;153;154;155;156;157 156 35 AAAEVGAPFIEIHTGCYADAK Unmodified 2190.0416 0.041553824 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 1 1 1 1 2 2 2 2 1 2 1 1 1 36.91 35.156 2;3 3.0182E-21 17012 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 187.97 178.39 890880000 127060000 120600000 99071000 1224100 0 949460 9648600 12131000 9647300 3789600 4432100 5133000 87619000 92135000 76257000 0 0 0 114020000 8571800 110040000 2357400 2472900 3731400 14 319 13 234;235;236;237;238;239;240;241;242;243;244;245;246;247;248;249;250;251;252;253;254;255;256;257;258;259;260;261;262 158;159;160;161;162;163;164;165;166;167;168;169;170;171;172;173;174;175;176 166 19 AAAFEGELIPASQIDR Unmodified 1686.8577 0.85769944 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 1 1 2 2 2 1 1 1 1 1 1 1 2 2 2 40.576 38.703 2;3 2.3092E-18 19111 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 187.85 181.32 9675200000 1290500000 1120500000 1114400000 67504000 65494000 70495000 367510000 347790000 351180000 133770000 133570000 138000000 516660000 532710000 468110000 0 84863000 0 811060000 873840000 845510000 105110000 113740000 122890000 15 349 14 263;264;265;266;267;268;269;270;271;272;273;274;275;276;277;278;279;280;281;282;283;284;285;286;287;288;289;290;291;292 177;178;179;180;181;182;183;184;185;186;187;188;189;190;191;192;193;194;195;196;197;198;199;200;201;202;203;204;205;206 185 30 AAAGISETLLR Unmodified 1100.619 0.61897272 53 P00935 metB Cystathionine gamma-synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.484 28.228 2 0.00023497 13362 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 100.02 93.914 136540000 14677000 12006000 13328000 0 0 0 16458000 16386000 16293000 0 0 0 7066700 7293200 4127200 0 0 0 8934400 9675800 10295000 0 0 0 16 53 15 293;294;295;296;297;298;299;300;301;302;303;304 207;208;209;210 208 4 AAAIAYAR Unmodified 805.44464 0.44463717 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 14.149 14.901 2 0.0021041 4727 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.29 40.569 226870000 69357000 68239000 68705000 0 0 0 5428000 0 0 1393300 0 0 5741100 3246600 0 0 0 0 0 4762500 0 0 0 0 17 995 16 305;306;307;308;309;310;311;312 211;212 212 2 AAAICAER Unmodified 860.41744 0.41743614 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.693 12.413 2 0.0026172 3353 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.997 82.07 4107400000 207190000 190260000 167580000 0 2183600 2765800 427040000 442830000 425730000 29350000 19416000 19732000 473190000 425940000 317180000 0 0 0 342450000 312500000 299720000 2359000 0 0 18 539 17 313;314;315;316;317;318;319;320;321;322;323;324;325;326;327;328;329;330;331 213;214;215;216;217;218;219;220;221;222;223;224;225;226;227 224 9 AAAIGIAMGSGTDVALETADAALTHNHLR Unmodified 2846.4345 0.43448978 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.811 46.335 4 9.4329E-17 22923 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.17 150.42 163120000 13061000 11259000 10280000 0 0 1997800 15202000 16281000 15206000 4479600 5679000 0 14014000 13139000 10972000 0 0 0 11804000 9264800 10483000 0 0 0 19 1475 18 332;333;334;335;336;337;338;339;340;341;342;343;344;345;346 228;229;230;231;232 232 5 AAALAAADAR Unmodified 899.48248 0.48247924 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.094 13.701 2 2.0725E-06 3983 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.07 105.29 9362400000 824100000 650020000 641620000 217070000 165560000 205160000 1174600000 1175200000 1125700000 97138000 82915000 86842000 441870000 441010000 411440000 7249300 5556700 5273800 447850000 419110000 424950000 112560000 105210000 94435000 20 548 19 347;348;349;350;351;352;353;354;355;356;357;358;359;360;361;362;363;364;365;366;367;368;369;370 233;234;235;236;237;238;239;240;241;242;243;244;245;246;247;248;249;250;251;252 241 20 AAALTATPQVDK Unmodified 1184.6401 0.6401021 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 17.816 18.466 2 2.1075E-05 6786 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.8 114.42 203440000 0 0 0 0 0 0 13282000 12689000 12524000 0 0 0 13671000 15180000 11566000 0 0 0 39485000 46295000 38751000 0 0 0 21 865 20 371;372;373;374;375;376;377;378;379 253;254;255;256;257;258;259;260;261 258 8 AAAQLQQGLADTSDENLK Unmodified 1871.9225 0.92248455 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.753 25.526 2 5.0013E-17 9258 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 196.57 173.45 518930000 22899000 19362000 18477000 6373000 7131900 6205200 0 38961000 37567000 20112000 19292000 15472000 40044000 42447000 35714000 3137000 0 0 50100000 48434000 51257000 10174000 11756000 14016000 22 1876 21 380;381;382;383;384;385;386;387;388;389;390;391;392;393;394;395;396;397;398;399;400 262;263;264;265;266;267 264 6 AAARDPGSR Unmodified 899.45733 0.45732712 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 9.7087 9.8422 2 0.00052716 1739 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 117.4 106.33 261350000 0 0 0 0 0 0 0 0 0 8083200 8017800 7206500 0 0 0 65041000 25245000 22173000 0 0 0 37732000 44725000 43130000 23 935 22 401;402;403;404;405;406;407;408;409 268;269;270;271;272;273 270 6 AAASHLVR Unmodified 823.46644 0.46643525 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.45 11.266 2 1.9343E-06 2559 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 189.31 159.08 1648600000 312920000 302170000 276350000 0 0 0 171470000 166690000 153870000 0 0 0 35815000 38805000 33481000 0 0 0 60287000 49425000 47368000 0 0 0 24 886 23 410;411;412;413;414;415;416;417;418;419;420;421 274;275;276;277;278;279;280;281;282;283;284 275 11 AAATQEMTLVDTPNAK Unmodified 1659.8138 0.81378572 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 2 2 2 2 2 26.819 25.658 2;3 3.019E-39 11633 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 309.66 260.68 2661600000 224100000 199750000 155960000 0 0 0 217190000 214290000 198890000 0 0 0 235270000 238890000 224330000 0 0 0 246260000 255110000 251570000 0 0 0 25 1120 24 422;423;424;425;426;427;428;429;430;431;432;433;434;435;436;437;438;439;440;441;442;443;444;445;446 285;286;287;288;289;290;291;292;293;294;295;296;297;298;299;300;301 294 17 AAATQHNLEVLASR Unmodified 1479.7794 0.77938954 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 2 2 1 2 1 2 1 2 2 2 1 1 1 2 2 2 3 2 2 19.18 19.521 2;3 7.5226E-20 6914 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 218.01 214 350220000 22179000 6325600 17049000 2122800 2435100 1597600 31981000 6014600 33892000 0 0 1407100 34747000 30693000 31684000 2754900 1034900 1226400 39594000 37200000 32938000 5855900 3083700 4403100 26 670 25 447;448;449;450;451;452;453;454;455;456;457;458;459;460;461;462;463;464;465;466;467;468;469;470;471;472;473;474;475;476;477;478;479;480;481;482;483;484 302;303;304;305;306;307;308;309;310;311;312;313 312 11 AAAVANQGK Unmodified 828.44537 0.44536545 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 2 1 5.3885 6.2237 2 1.1107E-07 1068 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 150.02 117.55 6525000000 1197900000 1082700000 984110000 0 0 0 0 772130000 0 0 0 0 372810000 351840000 355620000 0 0 0 456350000 509170000 442430000 0 0 0 27 1652 26 485;486;487;488;489;490;491;492;493;494;495;496;497 314;315;316;317;318;319;320;321;322 316 9 AAAVEQLQVWGQR Unmodified 1454.763 0.7630112 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.941 33.438 2 7.8015E-13 15917 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 236.06 226.28 670280000 59578000 43987000 43927000 2992500 2910100 3322700 61908000 51603000 52895000 11563000 11303000 11497000 37792000 36512000 35730000 4570300 2844800 2701800 57573000 54984000 51368000 9099600 9066800 10554000 28 1052 27 498;499;500;501;502;503;504;505;506;507;508;509;510;511;512;513;514;515;516;517;518;519;520;521 323;324;325;326;327;328;329;330;331;332;333;334;335;336;337;338;339;340;341 338 18 AAAWFAEEDTGAQVLLCSEIGSEGR Unmodified 2666.2282 0.22824497 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 5 4 4 7 5 9 4 5 5 53.65 52.795 2;3;4 4.984E-84 19631 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 394.4 388.37 1928800000 9437500 0 0 957580 870920 0 0 0 0 260040000 239890000 214130000 0 0 0 231080000 241900000 276410000 0 0 0 174170000 145510000 134350000 29 1616 28 522;523;524;525;526;527;528;529;530;531;532;533;534;535;536;537;538;539;540;541;542;543;544;545;546;547;548;549;550;551;552;553;554;555;556;557;558;559;560;561;562;563;564;565;566;567;568;569;570;571;572 342;343;344;345;346;347;348;349;350;351;352;353;354;355;356;357;358;359;360;361;362;363;364;365;366;367;368;369;370;371;372;373;374;375;376;377;378;379;380;381;382;383;384;385;386;387;388;389;390;391 350 45 AACLLPK Unmodified 771.4313 0.43129529 9 CON__P02768-1 yes yes 0 0 0 By MS/MS By matching 1 1 18.804 18.508 2 0.060481 5834 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 61.123 54.736 6292000 0 0 0 0 0 0 0 0 0 3363000 0 2929000 0 0 0 0 0 0 0 0 0 0 0 0 + 30 9 29 573;574 392 392 1 AACNAFTDAVLEIAR Unmodified 1620.793 0.7929907 1870 P76541 eutL Ethanolamine utilization protein EutL yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.056 48.65 2 1.9214E-11 23919 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 165.66 142.29 183400000 25586000 21418000 22192000 0 0 0 12886000 11812000 11288000 0 0 0 13670000 12603000 11356000 0 0 0 13775000 13922000 12895000 0 0 0 31 1870 30 575;576;577;578;579;580;581;582;583;584;585;586 393 393 1 AADAAEEGGDEFHWHR Unmodified 1796.7503 0.75027426 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.446 19.841 4 6.2396E-05 7637 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 80.534 80.534 180680000 10006000 10853000 11880000 0 864040 657890 13022000 15809000 17660000 2819700 0 0 10791000 15190000 12357000 0 0 0 16762000 20468000 18013000 2006500 1517900 0 32 1617 31 587;588;589;590;591;592;593;594;595;596;597;598;599;600;601;602;603 394;395;396;397;398;399 398 6 AADAAFAEWGQTTPK Unmodified 1562.7365 0.73652168 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 34.142 32.644 2 1.1767E-08 15747 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.36 124.98 933060000 266540000 254330000 252010000 0 0 0 29775000 28867000 23366000 0 0 1500400 10488000 10363000 9949400 0 0 0 15478000 14813000 15569000 0 0 0 33 1925 32 604;605;606;607;608;609;610;611;612;613;614;615;616 400;401;402;403;404;405;406;407;408 402 6 AADAHGIPFTLSTVSVCPIEEVAPAIK Unmodified 2792.4419 0.44186657 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.891 50.643 3 2.6024E-07 18286 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 93.21 92.311 238100000 15790000 17052000 16465000 9804200 7883100 7808100 15870000 15533000 15857000 0 0 0 9421400 9703500 11312000 0 0 0 29117000 31957000 24528000 0 0 0 34 1417 33 617;618;619;620;621;622;623;624;625;626;627;628;629;630;631 409;410;411;412;413 411 5 AADALRLPDWDAK Unmodified 1440.7361 0.73612775 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 16.436 17.071 2 0.053704 4479 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 45.161 31.808 13805000 0 0 0 3029800 3464700 3421600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1950400 1938500 35 561 34 632;633;634;635;636 414 414 1 AADAMFK Unmodified 752.35271 0.35271062 1583 P45955 ybgF Uncharacterized protein YbgF yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.92 16.697 2 0.0078297 5502 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 89.673 79.489 463990000 56605000 56493000 0 0 123950 0 34990000 33837000 32585000 0 0 0 41575000 34456000 32255000 0 0 407850 50434000 42179000 48055000 0 0 0 36 1583 35 637;638;639;640;641;642;643;644;645;646;647;648;649 415;416;417;418;419;420;421 419 7 AADAPKPTAEK Unmodified 1097.5717 0.57168818 1329 P29131 ftsN Cell division protein FtsN yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 8.7934 9.676 2 0.0035257 2323 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 74.376 66.705 31302000 0 7672400 0 0 0 0 1685600 0 1642200 0 0 0 4847200 3291000 2658100 0 0 0 9505800 0 0 0 0 0 37 1329 36 650;651;652;653;654;655;656 422;423 423 2 AADEAPGK Unmodified 757.36063 0.36063277 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.4029 6.2521 2 0.0071836 1143 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.753 83.753 750020000 99863000 84080000 72866000 0 0 0 66905000 56708000 60617000 0 0 0 51813000 39638000 40784000 0 0 0 70032000 53076000 53636000 0 0 0 38 1503 37 657;658;659;660;661;662;663;664;665;666;667;668 424;425;426;427;428;429 425 6 AADEGLEVK Unmodified 930.46583 0.46582612 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 14.448 15.161 2 0.00034096 4968 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.28 65.521 786330000 303930000 236090000 243850000 0 0 0 0 2462800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39 1111 38 669;670;671;672 430;431;432 432 3 AADGLWEEHR Unmodified 1182.5418 0.54178503 1799 P75960 cobB NAD-dependent protein deacylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.516 18.198 3 0.00048841 6343 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.882 54.561 119150000 14384000 10364000 7214300 0 0 0 10959000 12147000 14254000 0 0 0 7145100 9462300 8707600 0 0 0 9449800 7884200 7180900 0 0 0 40 1799 39 673;674;675;676;677;678;679;680;681;682;683;684 433;434;435;436;437;438;439;440 438 8 AADGLWEEHRVEDVATPEGFDRDPELVQAFYNAR Unmodified 3901.8296 0.8295938 1799 P75960 cobB NAD-dependent protein deacylase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.724 45.136 5 0.1204 18048 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 25.376 23.886 94366000 6769200 9939500 13301000 0 0 0 6033400 5271700 0 0 7060900 7382000 0 4916400 0 0 0 0 5408000 9118600 8371600 2965100 3233300 4594600 41 1799 40 685;686;687;688;689;690;691;692;693;694;695;696;697;698 441 441 1 AADGSTVAQTALSYDDYR Unmodified 1902.8595 0.85954994 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.2 33.738 2;3 2.1073E-36 16463 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 292.57 292.57 701150000 51769000 50710000 46872000 0 0 0 75874000 72855000 72774000 0 0 0 45394000 49626000 47506000 0 0 0 64211000 61457000 62105000 0 0 0 42 473 41 699;700;701;702;703;704;705;706;707;708;709;710;711;712;713;714;715;716;717;718;719;720;721;722 442;443;444;445;446;447;448;449;450;451;452;453;454;455;456;457;458;459;460;461;462;463;464 442 23 AADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGK Unmodified 4229.0773 0.077293988 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 54.907 54.609 4 6.2567E-28 20438 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 151.18 147.47 161230000 0 0 12514000 0 0 0 0 0 0 0 0 0 0 0 0 29682000 65040000 53991000 0 0 0 0 0 0 43 222 42 723;724;725;726 465;466;467 466 3 AADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKR Unmodified 4385.1784 0.17840502 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 44.053 42.308 5 0.1425 15040 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 0.92796 0.90724 84902000 0 0 0 5949600 42070000 12064000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13246000 0 11573000 44 222 43 727;728;729;730;731;732 468 468 1 AADIIGIGINGVDAVSELSK Unmodified 1941.0419 0.0418714 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 53.704 52.298 3 0.0016143 25741 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.032 56.191 40307000 12357000 16349000 11601000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45 71 44 733;734;735 469;470 469 2 AADIVLQAAIAAGAPK Unmodified 1478.8457 0.8456782 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 4 2 4 4 3 2 2 3 3 4 3 1 2 2 3 3 3 2 4 2 44.639 43.09 2;3 8.8508E-14 17437 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 172.92 164.83 7577200000 182080000 215990000 148880000 140030000 130120000 137260000 1158700000 991390000 1017700000 129390000 113270000 106250000 551470000 553800000 587960000 5460100 6163600 6610000 444460000 180120000 398910000 124850000 125790000 120640000 46 548 45 736;737;738;739;740;741;742;743;744;745;746;747;748;749;750;751;752;753;754;755;756;757;758;759;760;761;762;763;764;765;766;767;768;769;770;771;772;773;774;775;776;777;778;779;780;781;782;783;784;785;786;787;788;789;790;791;792;793;794;795;796;797;798;799;800;801 471;472;473;474;475;476;477;478;479;480;481;482;483;484;485;486;487;488;489;490;491;492;493;494;495;496;497;498;499;500;501;502;503;504;505;506;507;508;509;510;511;512;513;514;515;516;517;518;519;520;521;522;523;524;525;526;527;528;529;530;531;532;533;534;535;536;537;538;539;540;541;542;543;544;545;546;547;548 472 76 AADLVDALGQENNPEWK Unmodified 1868.8905 0.89045614 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 42.698 40.84 2;3 8.9257E-19 16016 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 232.42 229.01 1035300000 30240000 20865000 22858000 8062200 6245100 7170500 67118000 58629000 61636000 18717000 27371000 25641000 54379000 49240000 50739000 0 0 0 87499000 79228000 83893000 99725000 92633000 83444000 47 205 46 802;803;804;805;806;807;808;809;810;811;812;813;814;815;816;817;818;819;820;821;822;823;824;825;826;827;828;829;830;831;832;833;834;835;836;837;838;839;840;841;842 549;550;551;552;553;554;555;556;557;558;559;560;561;562;563;564;565;566;567;568;569;570;571;572;573;574;575;576;577;578;579 558 31 AADMTGADIEAMTR Unmodified 1451.6385 0.63846389 350 P0A7J7 rplK 50S ribosomal protein L11 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 1 1 1 2 2 2 2 2 2 31.84 30.363 2;3 1.6424E-11 11247 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 208.46 188.15 6992300000 846210000 790200000 727750000 42258000 41603000 41529000 285560000 262910000 258790000 75211000 70041000 57807000 417640000 406940000 413350000 65257000 33565000 38749000 649370000 646010000 589420000 70187000 78904000 83029000 48 350 47 843;844;845;846;847;848;849;850;851;852;853;854;855;856;857;858;859;860;861;862;863;864;865;866;867;868;869;870;871;872;873;874;875;876;877;878;879;880;881;882;883;884;885;886;887;888 580;581;582;583;584;585;586;587;588;589;590;591;592;593;594;595;596;597;598;599;600;601;602;603;604;605;606;607;608;609;610;611 590 31 AADMTGADIEAMTR Oxidation (M) 1467.6334 0.63337851 350 P0A7J7 rplK 50S ribosomal protein L11 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 2 1 2 1 1 1 2 2 26.232 25.156 2 0.00036892 11222 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 80.245 69.886 88545000 8144500 15372000 14985000 1590100 0 702980 0 0 0 1441100 1099900 902880 8859100 4403000 4629800 0 0 454170 6045100 6253400 11914000 0 1747400 0 49 350 47 889;890;891;892;893;894;895;896;897;898;899;900;901;902;903;904;905;906;907;908;909;910;911 612;613;614;615;616;617 617 154 5 AADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNK Unmodified 4082.932 0.93200996 884 P0AES9 hdeA Acid stress chaperone HdeA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 3 3 3 1 2 2 2 2 2 1 52.75 51.418 3;4;5 2.5476E-48 25417 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 224.54 223.21 4144100000 584870000 480080000 411800000 0 4087200 3761400 809560000 780020000 675510000 0 9095400 0 98483000 82220000 79821000 0 0 0 45251000 43654000 35908000 0 0 0 50 884 48 912;913;914;915;916;917;918;919;920;921;922;923;924;925;926;927;928;929;930;931;932;933;934;935;936;937;938;939;940;941;942;943 618;619;620;621;622;623;624;625;626;627;628;629;630 619 11 AADSCHVSQPTLSGQIR Unmodified 1825.8741 0.87409456 741 P0ACQ4 oxyR Hydrogen peroxide-inducible genes activator yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 18.172 18.852 3 7.4875E-05 7032 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.341 72.793 47126000 10426000 9676300 9734300 0 0 0 0 0 0 0 0 0 0 5030100 5916100 0 0 0 2349700 0 3993800 0 0 0 51 741 49 944;945;946;947;948;949;950 631 631 1 AADTEDEAK Unmodified 948.40362 0.4036198 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 5.3658 6.215 2 0.0037605 1516 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.438 80.438 712610000 71598000 58263000 54105000 0 0 0 65392000 55905000 72592000 0 0 0 54350000 53927000 37250000 0 0 0 61280000 63304000 64641000 0 0 0 52 295 50 951;952;953;954;955;956;957;958;959;960;961;962 632;633 633 1 AADVHLCVK Unmodified 1011.5172 0.51715019 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.715 14.581 2 0.0003052 4622 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.4 96.774 244490000 29298000 29000000 22113000 0 0 0 14743000 19620000 19403000 0 0 0 15713000 15277000 17402000 0 0 0 21649000 22268000 18000000 0 0 0 53 1565 51 963;964;965;966;967;968;969;970;971;972;973;974 634;635;636;637;638;639;640;641 634 8 AAEAAAAEAAEKK Unmodified 1229.6252 0.62518031 1994 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 2 1 2 1 1 1 1 1 1 4.981 5.9063 2 0.023355 1109 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 54.066 38.818 1528500000 0 0 0 791820 0 0 196010000 98502000 244640000 0 0 0 178510000 159260000 150690000 0 0 0 168590000 168460000 163100000 0 0 0 + 54 1994 52 975;976;977;978;979;980;981;982;983;984;985;986 642;643 643 2 AAEALKER Unmodified 886.48723 0.48723027 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 9.3827 9.8283 2 0.0015954 1977 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 117.4 97.96 191310000 0 48606000 42338000 3072700 5963600 4124200 0 0 0 35922000 3760400 0 0 0 0 10421000 6088400 6072600 0 0 0 0 14717000 10222000 55 300 53 987;988;989;990;991;992;993;994;995;996;997;998 644;645;646;647;648 645 3 AAEAVIIDTIR Unmodified 1170.6608 0.66083754 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 34.862 33.221 2 1.5859E-05 15915 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.83 126.63 421080000 100390000 104250000 92302000 1366500 0 0 0 0 109610000 4546300 3684900 3219200 0 0 0 1707700 0 0 0 0 0 0 0 0 56 787 54 999;1000;1001;1002;1003;1004;1005;1006;1007 649;650;651 650 3 AAEEAFR Unmodified 792.37662 0.37661719 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.487 13.255 2 0.0055004 3844 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.384 86.953 1143500000 121330000 102570000 143530000 0 0 0 104860000 111100000 97441000 2730500 0 0 74931000 64156000 59345000 0 0 0 88036000 98305000 75163000 0 0 0 57 1170 55 1008;1009;1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020 652;653;654;655;656;657 654 4 AAEELEK Unmodified 788.3916 0.39159855 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.952 11.768 2 0.006056 2925 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 97.068 56.147 1488300000 239450000 228230000 229090000 0 0 0 180720000 194810000 181360000 0 0 0 34818000 29356000 25848000 0 0 0 50461000 45804000 48345000 0 0 0 58 401 56 1021;1022;1023;1024;1025;1026;1027;1028;1029;1030;1031;1032 658;659;660 659 3 AAEELNKR Unmodified 929.49304 0.49304393 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 7.2676 8.1014 2 0.00014463 1526 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 158.08 44.388 238250000 33623000 26281000 33203000 0 0 0 0 0 0 0 0 0 19737000 23026000 25980000 0 0 0 23246000 24074000 29075000 0 0 0 59 1437 57 1033;1034;1035;1036;1037;1038;1039;1040;1041;1042;1043 661;662;663;664;665;666;667;668;669;670 669 10 AAEFGVLVR Unmodified 960.53927 0.53926584 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.1 30.448 2 0.00019889 11653 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 126.67 95.378 80240000 0 0 0 1497000 2176600 1737500 14330000 11536000 14458000 4159100 4772500 4345500 4345300 3822200 3086700 0 0 0 4765300 0 3928800 0 0 1279900 60 1980 58 1044;1045;1046;1047;1048;1049;1050;1051;1052;1053;1054;1055;1056;1057;1058 671;672;673;674;675;676;677 673 6 AAEGIAPK Unmodified 755.41775 0.41775372 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.369 12.201 2 0.0034654 3154 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 91.906 80.792 3231900000 495360000 633090000 573060000 0 0 0 164530000 161540000 146980000 0 0 0 144600000 105650000 128610000 0 0 0 245740000 220700000 212060000 0 0 0 61 1444 59 1059;1060;1061;1062;1063;1064;1065;1066;1067;1068;1069;1070 678;679;680;681;682;683;684;685;686;687 679 10 AAEGIAPKPLDANQMAALVELLK Unmodified 2362.293 0.29301748 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 54.298 52.856 2;3 8.4747E-35 26202 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 206.63 204.42 2365900000 301240000 301080000 255150000 5504600 0 0 126370000 109480000 92886000 0 0 0 130990000 119700000 115800000 0 0 0 280300000 285380000 242040000 0 0 0 62 1444 60 1071;1072;1073;1074;1075;1076;1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087;1088;1089;1090;1091;1092;1093;1094;1095 688;689;690;691;692;693;694;695;696;697;698;699;700;701;702 696 15 AAEGWAR Unmodified 759.36639 0.36638685 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.999 13.649 2 0.001213 4060 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.99 133.99 1621500000 98832000 122530000 123430000 3665300 3730700 3473200 148600000 146320000 152700000 8240600 4587400 5753800 118000000 103170000 90225000 0 3472200 3788000 156520000 166490000 154790000 0 1617200 1554400 63 62 61 1096;1097;1098;1099;1100;1101;1102;1103;1104;1105;1106;1107;1108;1109;1110;1111;1112;1113;1114;1115;1116;1117 703;704;705;706;707;708;709;710;711;712;713;714;715;716 707 14 AAEHVYNVLR Unmodified 1170.6146 0.61455605 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 16.64 17.315 2 1.8423E-06 6164 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.56 90.933 268430000 78657000 88676000 92523000 0 0 0 8576700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 64 1914 62 1118;1119;1120;1121 717;718;719 718 3 AAEIIHIGQAIMEQK Unmodified 1650.8763 0.8763264 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 36.918 35.198 2;3 1.4531E-15 16842 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 217.91 189.2 1688100000 267360000 245970000 220960000 8179600 8803100 8525000 74858000 75811000 62927000 10642000 11108000 10717000 63792000 71637000 60853000 1060200 2808400 3757300 160520000 144390000 154510000 7007400 5561400 6295200 65 1302 63 1122;1123;1124;1125;1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141;1142;1143;1144;1145;1146;1147;1148;1149;1150;1151;1152;1153;1154;1155;1156;1157;1158;1159;1160;1161;1162;1163;1164;1165;1166 720;721;722;723;724;725;726;727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745;746 731 27 AAELAGNDTIPVEITR Unmodified 1668.8683 0.86826413 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.867 35.022 2 2.8849E-08 13577 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 147.71 141.05 269760000 6795700 10560000 8350200 3917400 4144800 3220200 26324000 24118000 25251000 11802000 7128100 7408000 15608000 14070000 14884000 0 0 0 25272000 22423000 25245000 4624300 3744100 4870500 66 717 64 1167;1168;1169;1170;1171;1172;1173;1174;1175;1176;1177;1178;1179;1180;1181;1182;1183;1184;1185;1186;1187 747;748;749;750;751;752;753;754;755 750 9 AAENNPELAAFIDECR Unmodified 1818.8207 0.82066201 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 2 2 2 2 2 2 2 1 1 41.634 39.882 2;3 1.2349E-30 19405 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 232.5 230.83 2634400000 271450000 238800000 192760000 1240900 1408100 1843800 187620000 189270000 174270000 0 0 1701000 199620000 189610000 186070000 0 0 0 267080000 264710000 261310000 2860500 1315400 1493500 67 170 65 1188;1189;1190;1191;1192;1193;1194;1195;1196;1197;1198;1199;1200;1201;1202;1203;1204;1205;1206;1207;1208;1209;1210;1211;1212;1213;1214;1215;1216;1217;1218;1219;1220 756;757;758;759;760;761;762 759 7 AAEQLEK Unmodified 787.40758 0.40758296 402 P0A870 talB Transaldolase B yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 3 3 2 1 1 1 1 1 2 2 2 1 3 3 3 10.595 11.335 1;2 0.0018451 2697 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.79 21.099 8378200000 846780000 876110000 253310000 0 0 0 897130000 909140000 810000000 6291800 3685700 0 377800000 370600000 320640000 0 0 14972000 1250900000 1114900000 326030000 0 0 0 68 402 66 1221;1222;1223;1224;1225;1226;1227;1228;1229;1230;1231;1232;1233;1234;1235;1236;1237;1238;1239;1240;1241;1242;1243;1244;1245;1246;1247;1248;1249 763;764;765;766;767 763 4 AAESALNIDVPVNAQYIR Unmodified 1943.0112 0.011239973 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 43.767 42.266 2;3 5.4373E-67 20625 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 369.63 322.83 1312700000 5373100 5504400 5914600 0 0 0 130980000 125790000 117270000 39075000 32564000 34940000 104040000 94028000 97526000 4270600 8132600 11275000 158620000 148000000 157450000 9848500 11180000 10880000 69 723 67 1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265;1266;1267;1268;1269;1270;1271;1272;1273;1274;1275;1276;1277;1278;1279;1280;1281;1282;1283;1284;1285 768;769;770;771;772;773;774;775;776;777;778;779;780;781;782;783;784;785;786;787;788;789;790;791;792;793;794;795;796 786 29 AAETNVAK Unmodified 802.41848 0.418482 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 2 1 1 1 6.2993 7.1331 1;2 0.00017589 1621 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.26 87.364 319020000 88065000 107900000 105390000 0 0 0 0 0 0 0 0 0 1806600 3668900 3234500 0 0 0 1838100 2851700 4263600 0 0 0 70 1525 68 1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296;1297;1298 797;798;799;800 800 2 AAEVFGR Unmodified 748.38679 0.38678794 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS 1 15.13 15.782 2 6.5735E-05 5352 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.94 100.83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71 167 69 1299 801 801 1 AAEVLVVDTR Unmodified 1071.5924 0.59242362 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25 23.889 2 7.6206E-07 9975 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 172.23 126.55 2225900000 104770000 92319000 86813000 0 0 0 135820000 142750000 0 13026000 13051000 12705000 178690000 150500000 162990000 0 0 0 354220000 330110000 330030000 37129000 40181000 40818000 72 1819 70 1300;1301;1302;1303;1304;1305;1306;1307;1308;1309;1310;1311;1312;1313;1314;1315;1316;1317 802;803;804;805;806;807;808;809;810;811;812;813;814;815;816;817;818 818 17 AAFAGLR Unmodified 704.39696 0.3969587 1242 P24203 yjiA Uncharacterized GTP-binding protein YjiA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 19.32 19.765 2 0.0019599 7548 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.76 88.245 540570000 47846000 40383000 38404000 0 0 0 49897000 57692000 53224000 1012100 0 0 42755000 34144000 32862000 0 0 0 48148000 48796000 45405000 0 0 0 73 1242 71 1318;1319;1320;1321;1322;1323;1324;1325;1326;1327;1328;1329;1330 819;820;821;822 819 4 AAFDDAIAAR Unmodified 1019.5036 0.50360861 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.057 23.967 2 2.4973E-05 8529 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 147.29 129.25 1276200000 46363000 0 0 30068000 30781000 30683000 120250000 109490000 112890000 49094000 46140000 42562000 65199000 71764000 51574000 0 4542100 0 112540000 123070000 118690000 35963000 38931000 35642000 74 649 72 1331;1332;1333;1334;1335;1336;1337;1338;1339;1340;1341;1342;1343;1344;1345;1346;1347;1348;1349;1350 823;824;825;826;827;828;829;830;831;832;833;834;835;836;837;838;839 825 17 AAFDDWFAR Unmodified 1097.493 0.49304393 1923 P77649 ydiU UPF0061 protein YdiU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.325 43.91 2 0.0022709 20658 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 96.253 84.884 86803000 8396600 8217600 6438100 0 0 0 6388400 7033100 5883900 0 0 0 4385900 5135800 3815000 0 0 0 11409000 11191000 8508200 0 0 0 75 1923 73 1351;1352;1353;1354;1355;1356;1357;1358;1359;1360;1361;1362 840;841 841 2 AAFDFAVEHQSVER Unmodified 1604.7583 0.75831975 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 28.534 27.225 2;3 6.2819E-35 12501 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 255.3 248.65 3667700000 135150000 104490000 108530000 21696000 22822000 25498000 256280000 282730000 292110000 104220000 88338000 93831000 269990000 275750000 277540000 25200000 15293000 17871000 331970000 326690000 362590000 81575000 76590000 70980000 76 643 74 1363;1364;1365;1366;1367;1368;1369;1370;1371;1372;1373;1374;1375;1376;1377;1378;1379;1380;1381;1382;1383;1384;1385;1386;1387;1388;1389;1390;1391;1392;1393;1394;1395;1396;1397;1398;1399;1400;1401;1402;1403;1404;1405;1406;1407;1408;1409 842;843;844;845;846;847;848;849;850;851;852;853;854;855;856;857;858;859;860;861;862;863;864;865;866;867;868;869;870;871;872;873;874;875;876;877;878;879;880 862 39 AAFDITQLD Unmodified 992.48148 0.48147619 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 1 48.927 47.492 1;2 0.0019775 18750 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 79.939 67.583 149890000 10458000 11122000 9699500 5509000 6711500 6501500 8842500 5321900 6236700 15810000 9497200 9998100 2398300 1798600 0 0 0 0 9176300 7655600 9560500 6843000 1960800 4793300 77 1691 75 1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424;1425;1426;1427;1428;1429;1430;1431;1432;1433;1434;1435;1436;1437;1438;1439;1440;1441;1442;1443;1444 881;882;883;884;885;886;887;888;889;890;891;892 885 11 AAFDQWVAK Unmodified 1034.5185 0.5185304 661 P0ABJ1 cyoA Cytochrome bo(3) ubiquinol oxidase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.79 30.404 2 0.00087472 14514 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.997 57.809 2069000000 84390000 80557000 77777000 21466000 21260000 19651000 118620000 111870000 111220000 57749000 45021000 42027000 128490000 114610000 117590000 12602000 8113900 8801400 241000000 263650000 251190000 48289000 44199000 38917000 78 661 76 1445;1446;1447;1448;1449;1450;1451;1452;1453;1454;1455;1456;1457;1458;1459;1460;1461;1462;1463;1464;1465;1466;1467;1468 893;894;895;896;897;898;899;900;901;902;903;904;905;906;907;908;909;910;911 898 16 AAFGGSGGR Unmodified 778.3722 0.37220051 17 CON__P35908 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 2 2 2 1 1 7.7105 8.4278 2 0.12196 1095 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 40.573 5.4672 2341100000 56140000 16301000 0 5795900 6600700 6385400 139120000 135300000 143670000 80188000 0 69302000 225130000 217680000 181810000 0 10548000 10932000 304280000 328620000 295810000 47626000 0 59869000 + 79 17 77 1469;1470;1471;1472;1473;1474;1475;1476;1477;1478;1479;1480;1481;1482;1483;1484;1485;1486;1487;1488;1489;1490;1491;1492;1493;1494 912;913;914;915;916;917;918 916 7 AAFISDFQLGDFDR Unmodified 1600.7522 0.75217174 116 P05707 srlD Sorbitol-6-phosphate 2-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 2 1 2 1 2 1 2 1 51.81 50.569 2 3.4363E-08 25095 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 183.99 179.65 604440000 43348000 50239000 38321000 0 407630 0 89292000 85723000 84164000 0 0 0 41622000 34423000 31116000 0 0 0 32559000 38629000 34594000 0 0 0 80 116 78 1495;1496;1497;1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510;1511;1512;1513 919;920;921;922;923;924;925;926;927 919 9 AAFLAVDNHK Unmodified 1084.5665 0.56654322 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.743 11.528 3 0.17036 2642 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 8.2248 0.57562 225140000 0 0 0 4969800 6689800 3796800 0 35311000 28405000 0 0 0 5255800 25887000 0 0 0 0 38079000 3487600 44089000 11681000 8430200 9055400 81 1355 79 1514;1515;1516;1517;1518;1519;1520;1521;1522;1523;1524;1525;1526 928 928 1 AAFNQMVQGHK Unmodified 1229.5975 0.59752577 770 P0AD59 ivy Inhibitor of vertebrate lysozyme yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 2 2 1 1 15.086 15.426 2;3 0.00045923 4339 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 82.241 61.269 36439000 0 0 0 472210 433990 387080 0 0 0 8784500 10330000 10278000 0 0 0 1950900 0 3801900 0 0 0 0 0 0 82 770 80 1527;1528;1529;1530;1531;1532;1533;1534;1535;1536;1537 929;930;931;932;933 929 5 AAFNSAVDAVR Unmodified 1119.5673 0.5672715 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.253 22.523 2 8.8048E-05 10066 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.13 115.96 440070000 95031000 89434000 81105000 0 0 0 33041000 32065000 29629000 0 0 0 6416600 5890100 6499600 0 0 0 17838000 20967000 22150000 0 0 0 83 1541 81 1538;1539;1540;1541;1542;1543;1544;1545;1546;1547;1548;1549 934;935;936;937;938;939;940;941 934 8 AAFQPVFLEVVDESYR Unmodified 1868.9309 0.93086439 653 P0ABE2 bolA Protein BolA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 2 1 1 1 54.569 53.093 2;3 1.4811E-08 26261 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.39 130.45 1245200000 160680000 146310000 141310000 0 0 0 110630000 122540000 111410000 4943500 4418700 0 95576000 81475000 109260000 0 0 0 58080000 53751000 44820000 0 0 0 84 653 82 1550;1551;1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570 942;943;944;945;946;947;948;949;950;951;952;953;954;955;956;957;958 945 17 AAFSDFSK Unmodified 871.40758 0.40758296 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 21.226 21.272 2 0.010731 6347 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 77.923 58.076 62880000 0 0 0 3045400 2246500 2071500 0 0 0 3669900 7377400 6844400 8995700 7615900 7782500 2305200 0 0 0 0 0 5214200 2909300 2802600 85 690 83 1571;1572;1573;1574;1575;1576;1577;1578;1579;1580;1581;1582;1583 959;960;961 959 3 AAFSNDMVYMEK Unmodified 1404.6054 0.60537285 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.92 31.297 2 5.6847E-05 14847 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 105.98 99.672 1738500000 99360000 95001000 95323000 3323900 2934100 2648900 102020000 106290000 104300000 2821300 3043900 2820000 167870000 160310000 151690000 0 0 0 207450000 203190000 216620000 4031200 3937800 3474900 86 1236 84 1584;1585;1586;1587;1588;1589;1590;1591;1592;1593;1594;1595;1596;1597;1598;1599;1600;1601;1602;1603;1604 962;963;964;965;966;967;968;969;970;971;972;973;974;975;976;977 969 14 AAFSNDMVYMEK Oxidation (M) 1420.6003 0.60028747 1236 P24182 accC Biotin carboxylase yes yes 0 1 0 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 26.86 25.749 2 0.04581 11225 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 47.228 43.073 21337000 0 0 0 0 0 0 0 0 3002400 0 0 0 4249500 5938000 0 0 0 0 0 3696600 4450300 0 0 0 87 1236 84 1605;1606;1607;1608;1609;1610 978;979 979 2 AAFVMDR Unmodified 808.39016 0.39015876 1431 P33650 feoB Ferrous iron transport protein B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 19.476 20.023 2 0.15197 7738 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 44.395 34.645 26042000 0 2200000 0 0 0 0 0 2777200 0 0 0 0 2850300 2022300 2183000 0 0 0 4852600 5590400 3566000 0 0 0 88 1431 85 1611;1612;1613;1614;1615;1616;1617;1618 980 980 1 AAGAELVGMEDLADQIK Unmodified 1729.8557 0.85565053 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 47.432 46.017 2;3 5.4072E-14 22370 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 206.58 203.94 6993200000 1018000000 876820000 839640000 10780000 11333000 9825400 245600000 262270000 234360000 84492000 82987000 18140000 474550000 412450000 405730000 19905000 26565000 26042000 588440000 583020000 619960000 49118000 49200000 43975000 89 353 86 1619;1620;1621;1622;1623;1624;1625;1626;1627;1628;1629;1630;1631;1632;1633;1634;1635;1636;1637;1638;1639;1640;1641;1642;1643;1644;1645;1646;1647;1648;1649;1650;1651;1652;1653;1654;1655;1656;1657;1658;1659;1660;1661;1662;1663 981;982;983;984;985;986;987;988;989;990;991;992;993;994;995;996;997;998;999;1000;1001;1002;1003;1004;1005;1006;1007;1008;1009;1010;1011 1002 31 AAGAELVGMEDLADQIKK Unmodified 1857.9506 0.95061355 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 39.958 38.461 3 8.0837E-05 13558 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 72.819 69.378 230360000 64312000 65364000 0 5279700 7177700 5237000 0 0 0 16650000 10186000 10813000 0 0 0 12905000 9361500 10257000 0 0 0 5792800 0 7027100 90 353 87 1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676 1012;1013;1014 1014 2 AAGATTANITQAIEQMR Unmodified 1745.873 0.87303193 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 40.349 38.615 2;3 3.9429E-91 19059 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 362.14 346.22 1397200000 163380000 166080000 149900000 3290200 3359100 3291200 163620000 147430000 170060000 2209000 0 2899200 65748000 67857000 60495000 0 0 0 67633000 81241000 78666000 0 0 0 91 1662 88 1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687;1688;1689;1690;1691;1692;1693;1694;1695;1696;1697;1698;1699;1700;1701;1702;1703;1704;1705;1706;1707;1708 1015;1016;1017;1018;1019;1020;1021;1022;1023;1024;1025;1026;1027;1028;1029;1030;1031;1032 1018 17 AAGDAPLSGTETTLPAPPR Unmodified 1820.9268 0.92684164 1368 P31455 yidR Uncharacterized protein YidR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.641 31.276 2 2.1811E-17 14788 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.48 155.26 86968000 11305000 11507000 8271600 0 0 0 4814600 6737200 7806800 0 0 0 5620200 5645400 4866400 0 0 0 4663900 9032500 6697200 0 0 0 92 1368 89 1709;1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720 1033;1034;1035;1036;1037;1038;1039 1034 7 AAGDAQWVLVHDAAR Unmodified 1578.7903 0.79028858 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.048 27.792 3 0.00014791 12942 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.91 72.922 148800000 13641000 8093300 9532000 0 0 0 12057000 14440000 12186000 0 0 0 11112000 10665000 11572000 0 0 0 16063000 13945000 15494000 0 0 0 93 1964 90 1721;1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732 1040;1041;1042 1042 3 AAGDAQWVLVHDAARPCLHQDDLAR Unmodified 2784.3514 0.35142885 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 2 31.182 29.603 4;5 8.7737E-05 10973 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 77.693 76.834 144260000 0 12060000 9580300 6003300 5238800 4145600 11189000 0 0 0 0 0 0 0 8593700 0 0 0 0 11684000 0 22811000 24786000 28170000 94 1964 91 1733;1734;1735;1736;1737;1738;1739;1740;1741;1742;1743;1744;1745;1746 1043;1044;1045;1046;1047 1047 5 AAGDNAMANQYETLANAR Unmodified 1879.8483 0.84827375 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 30.767 29.458 2;3 6.6354E-95 13681 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 350.49 344.64 377030000 85232000 81986000 69986000 0 0 0 15116000 17677000 18439000 0 0 0 13429000 12048000 10962000 0 0 0 16104000 19240000 16811000 0 0 0 95 1091 92 1747;1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759;1760;1761;1762;1763;1764;1765;1766;1767;1768 1048;1049;1050;1051;1052;1053;1054;1055;1056;1057;1058;1059;1060;1061 1056 14 AAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE Unmodified 3166.4902 0.49020956 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 55.885 54.804 2;3 3.5298E-18 21151 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 194 193.84 1701400000 5667200 28144000 10140000 0 0 0 2314700 2574100 10225000 127710000 73233000 73889000 6161200 23717000 4715900 326270000 341660000 298850000 5854000 7525600 12972000 109070000 119190000 111520000 96 458 93 1769;1770;1771;1772;1773;1774;1775;1776;1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792 1062;1063;1064;1065;1066;1067;1068;1069;1070;1071 1064 10 AAGGLWFGWSGETGNEDQPLKK Unmodified 2347.1233 0.12330962 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.759 41 3 1.0535E-10 20079 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.36 130.22 396860000 76755000 83110000 77122000 3462100 3228200 2648200 35526000 30456000 24175000 3480200 0 0 5704100 5690300 7158000 0 0 0 13670000 12921000 11759000 0 0 0 97 1376 94 1793;1794;1795;1796;1797;1798;1799;1800;1801;1802;1803;1804;1805;1806;1807;1808 1072;1073;1074 1073 3 AAGGQLSEK Unmodified 859.43995 0.43994572 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 2 2 1 10.254 10.949 2 0.00099819 2647 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.815 60.614 1380800000 10299000 0 0 0 0 0 0 62272000 51998000 13580000 14566000 12805000 186710000 157790000 161080000 0 0 0 245540000 253440000 210740000 0 0 0 98 1283 95 1809;1810;1811;1812;1813;1814;1815;1816;1817;1818;1819;1820;1821;1822;1823 1075;1076;1077;1078;1079;1080 1076 4 AAGIAIVTGDTK Unmodified 1115.6186 0.61863837 1240 P24193 hypE Hydrogenase isoenzymes formation protein HypE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.91 23.8 2 1.0243E-05 10726 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 129.85 116.81 193140000 6343200 6006700 6069100 1429400 1802500 1400900 20366000 19581000 21361000 8902400 6617900 7148400 14200000 12504000 13630000 0 0 0 13675000 11231000 12061000 3017500 2796800 3000600 99 1240 96 1824;1825;1826;1827;1828;1829;1830;1831;1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844 1081;1082;1083;1084;1085 1081 5 AAGLATGNVSTAELQDATPAALVAHVTSR Unmodified 2791.4464 0.44643467 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 2 1 1 1 3 3 2 1 1 2 3 2 1 1 1 46.58 45.128 2;3;4 1.5393E-66 21897 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 314.72 309.34 3895800000 0 0 0 4338200 4111300 4219400 250900000 270620000 255920000 4470400 6209100 4242600 498710000 554410000 428310000 6738000 0 7245600 512230000 584990000 474970000 7234800 8950300 6968300 100 38 97 1845;1846;1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873;1874;1875;1876 1086;1087;1088;1089;1090;1091;1092;1093;1094;1095;1096;1097;1098;1099;1100;1101;1102;1103;1104;1105;1106;1107;1108;1109;1110 1099 25 AAGLHLQESIAEQGALR Unmodified 1762.9326 0.93259572 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 28.705 27.327 2;3 4.6001E-62 12665 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 310.29 263.34 1155700000 99007000 75620000 70727000 11771000 14989000 16426000 14849000 14086000 15839000 19286000 16248000 14545000 74555000 85064000 75912000 3846300 3430000 3084600 170290000 156910000 129200000 26641000 21853000 21482000 101 698 98 1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900;1901;1902;1903;1904;1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915;1916;1917;1918;1919 1111;1112;1113;1114;1115;1116;1117;1118;1119;1120;1121;1122;1123;1124;1125;1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137;1138;1139;1140;1141;1142;1143;1144;1145;1146;1147;1148;1149 1127 38 AAGLHLQESIAEQGALRDASESDVEASLDR Unmodified 3137.5225 0.52251274 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.068 35.539 4 3.9729E-08 13700 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 100.68 98.475 101980000 10578000 13629000 9301500 5197900 8602600 5470300 0 0 0 0 0 0 3888600 6851500 6882600 0 0 2152200 0 12289000 0 6427300 3743600 6969300 102 698 99 1920;1921;1922;1923;1924;1925;1926;1927;1928;1929;1930;1931;1932;1933 1150;1151;1152;1153;1154;1155 1152 5 AAGLLQR Unmodified 727.43407 0.43407249 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.13 15.745 2 0.0023035 5279 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.67 73.459 440940000 0 2486800 0 0 0 0 72199000 83548000 67440000 0 3295000 4200700 46907000 36998000 33784000 0 1145000 0 30444000 26135000 30644000 0 0 1710300 103 506 100 1934;1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947 1156;1157;1158;1159;1160;1161;1162;1163 1157 8 AAGLSQYEHLIDDAIAWGK Unmodified 2057.0218 0.02180466 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 2 1 1 2 1 1 2 2 1 53.26 51.804 2;3 2.6823E-59 25418 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 254.58 227.64 1919100000 119740000 0 0 1207300 863690 0 362220000 415820000 402570000 0 1476300 1529500 93396000 80428000 78833000 0 0 0 124310000 125080000 111620000 0 0 0 104 401 101 1948;1949;1950;1951;1952;1953;1954;1955;1956;1957;1958;1959;1960;1961;1962;1963;1964;1965;1966;1967;1968;1969 1164;1165;1166;1167;1168;1169;1170;1171;1172;1173;1174;1175;1176;1177;1178;1179;1180 1176 17 AAGMDAVDVR Unmodified 1003.4757 0.4756793 1908 P77475 yqaB Fructose-1-phosphate phosphatase YqaB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 18.798 19.229 2 0.0046767 7441 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 66.568 58.035 258170000 6129000 7527100 0 0 0 0 32506000 29953000 26212000 1769900 0 0 21192000 19308000 16302000 0 467780 0 31653000 32485000 32669000 0 0 0 105 1908 102 1970;1971;1972;1973;1974;1975;1976;1977;1978;1979;1980;1981;1982 1181;1182;1183;1184;1185;1186 1182 3 AAGMMGLTAEMLAR Unmodified 1421.6829 0.68291166 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.764 44.439 2 1.0378E-08 21580 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.84 93.933 159430000 53474000 50470000 50259000 0 0 0 0 0 0 0 0 0 2857900 0 0 0 0 0 0 0 2369400 0 0 0 106 1168 103 1983;1984;1985;1986;1987 1187;1188;1189 1189 3 AAGPALLDACLK Unmodified 1198.638 0.63799361 420 P0A8D6 ymdB O-acetyl-ADP-ribose deacetylase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.465 32.81 2 0.0016308 15879 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 68.893 55.54 458110000 68268000 63397000 55984000 0 0 0 45652000 46410000 47036000 2648400 1995700 2337600 18157000 20307000 18714000 0 0 0 20541000 22060000 24602000 0 0 0 107 420 104 1988;1989;1990;1991;1992;1993;1994;1995;1996;1997;1998;1999;2000;2001;2002 1190;1191;1192;1193;1194;1195;1196;1197 1192 8 AAGVDIR Unmodified 700.38679 0.38678794 1997 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 2 1 2 1 1 1 1 1 16.201 17.071 2 0.11564 6020 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.036 12.218 297820000 121560000 58684000 100870000 0 0 0 0 0 2982200 0 0 0 4282800 3262100 3674100 0 0 0 0 2514000 0 0 0 0 + 108 1997 105 2003;2004;2005;2006;2007;2008;2009;2010;2011;2012 1198;1199 1198 2 AAGVETEVFFEVEADPTLSIVR Unmodified 2378.2006 0.20055689 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 1 1 1 1 2 1 1 1 2 2 2 54.834 53.391 2;3 1.4451E-52 26392 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 251.91 245.32 583660000 39075000 33560000 35181000 21879000 20881000 17400000 143550000 41547000 39939000 9355100 5092700 7585600 0 0 0 0 0 0 40726000 41378000 39506000 15778000 18074000 13150000 109 548 106 2013;2014;2015;2016;2017;2018;2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033;2034;2035;2036;2037;2038 1200;1201;1202;1203;1204;1205;1206;1207;1208;1209;1210;1211;1212;1213 1203 14 AAGWHFGDFFLR Unmodified 1422.6833 0.68330431 923 P0AFA7 nhaB Na(+)/H(+) antiporter NhaB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.201 47.8 3 1.5527E-05 23680 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 104.07 99.184 142910000 5417400 4819900 3472100 1283400 1343200 1185200 14941000 11529000 14143000 3952000 3450600 4422100 9187700 7153200 7959600 0 0 0 13329000 12021000 13431000 3283800 3501900 3079900 110 923 107 2039;2040;2041;2042;2043;2044;2045;2046;2047;2048;2049;2050;2051;2052;2053;2054;2055;2056;2057;2058;2059 1214;1215;1216;1217;1218;1219;1220;1221;1222 1218 9 AAGYDKPFK Unmodified 995.50763 0.50763136 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.482 13.167 2 0.012355 3568 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 68.383 52.751 918220000 52420000 54496000 56651000 0 0 0 98568000 76145000 74343000 8354700 9357400 10586000 79393000 79828000 71124000 0 0 0 75095000 82227000 88285000 0 0 1351000 111 1716 108 2060;2061;2062;2063;2064;2065;2066;2067;2068;2069;2070;2071;2072;2073;2074;2075 1223;1224;1225 1225 3 AAGYELGK Unmodified 807.41267 0.41266834 270 P0A6P9 eno Enolase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 2 1 2 3 3 1 2 2 2 2 2 1 1 1 3 2 2 1 1 1 14.053 14.731 1;2 0.011257 4710 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 77.058 43.542 26979000000 1558000000 1439900000 1354200000 5683100 8021400 7103900 3737900000 3695900000 3647700000 8953800 7856100 8368000 1832400000 1710400000 1680900000 2890500 2146000 1728400 2197000000 2051600000 2012100000 2851800 2637100 2918900 112 270 109 2076;2077;2078;2079;2080;2081;2082;2083;2084;2085;2086;2087;2088;2089;2090;2091;2092;2093;2094;2095;2096;2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107;2108;2109;2110;2111;2112;2113;2114;2115;2116;2117 1226;1227;1228;1229;1230;1231;1232;1233;1234;1235;1236;1237;1238;1239;1240;1241;1242;1243 1239 15 AAGYELGKDITLAMDCAASEFYKDGK Unmodified 2823.3095 0.30953176 270 P0A6P9 eno Enolase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 52.69 51.373 4 2.6188E-10 18635 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 114.35 111.74 40379000 0 0 0 7134000 9481900 10311000 0 0 0 0 5172100 5716700 0 0 0 0 0 0 0 0 0 0 0 2563000 113 270 110 2118;2119;2120;2121;2122;2123 1244;1245;1246 1245 3 AAGYTNIEFHK Unmodified 1249.6091 0.60913632 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 18.673 19.265 2;3 2.1541E-06 7611 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.81 103.6 1420100000 304120000 297010000 222440000 1398100 1435100 1679800 76217000 96058000 61235000 0 0 0 58865000 44993000 45376000 0 0 0 76098000 71455000 61692000 0 0 0 114 555 111 2124;2125;2126;2127;2128;2129;2130;2131;2132;2133;2134;2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150 1247;1248;1249;1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264 1247 18 AAHAPFISHPAEFCHLLVALK Unmodified 2328.2201 0.22012731 1082 P13001 bioH Pimeloyl-[acyl-carrier protein] methyl ester esterase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 1 1 1 1 1 2 2 2 1 2 1 38.16 36.541 4;5 0.0025378 17775 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 55.763 42.032 225380000 28949000 11836000 20593000 0 0 0 23130000 17123000 14342000 0 0 0 16990000 18650000 22583000 0 0 0 13213000 25680000 12293000 0 0 0 115 1082 112 2151;2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2167 1265;1266;1267 1266 3 AAHEVLMEMGEK Unmodified 1343.6214 0.62135726 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.606 20.096 3 0.0051952 7879 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 48.568 45.617 115080000 13231000 7973100 13123000 0 0 0 8979700 10637000 8831300 0 0 0 8587600 8339500 6978400 0 0 0 8433500 11027000 8933500 0 0 0 116 953 113 2168;2169;2170;2171;2172;2173;2174;2175;2176;2177;2178;2179 1268;1269;1270;1271;1272 1268 5 AAHQDEPQFGAQSTPLDER Unmodified 2095.9559 0.95590994 1410 P33218 yebE Inner membrane protein YebE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.86 22.235 3 1.368E-07 9435 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.5 107.76 142830000 9118500 7944800 7205300 0 0 3312800 13211000 16120000 13278000 0 3618300 4194500 9513100 6525300 7090000 0 0 0 12384000 9472000 15161000 0 0 4679700 117 1410 114 2180;2181;2182;2183;2184;2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195 1273;1274;1275 1275 3 AAHSFNLLDAR Unmodified 1213.6204 0.62036971 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 1 3 2 1 1 1 24.853 23.962 2;3 2.0805E-10 7643 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 192.26 166.16 4216200000 345630000 375520000 320090000 34002000 47257000 42554000 267100000 294440000 290500000 118610000 68574000 81090000 255060000 230770000 213760000 48598000 42449000 37343000 278460000 339430000 348280000 45411000 44919000 46358000 118 61 115 2196;2197;2198;2199;2200;2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230;2231;2232;2233;2234 1276;1277;1278;1279;1280;1281;1282;1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296;1297;1298;1299;1300;1301;1302;1303;1304 1277 26 AAIAAAQANPNAK Unmodified 1209.6466 0.64658446 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.538 13.136 2 4.5108E-07 3184 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 191.78 186.81 1669800000 24746000 20878000 21969000 0 6035700 5580900 249820000 244360000 218660000 52806000 48598000 49670000 157110000 144130000 131900000 5503400 3987300 4434000 92511000 79641000 76881000 8570000 10245000 11759000 119 25 116 2235;2236;2237;2238;2239;2240;2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258 1305;1306;1307;1308;1309;1310;1311;1312;1313;1314;1315;1316;1317;1318;1319;1320;1321;1322;1323;1324;1325;1326;1327 1308 22 AAIADGAK Unmodified 715.38645 0.38645359 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 2 1 1 1 10.486 11.329 2 0.062308 2597 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 57.177 27.371 992520000 0 37457000 33633000 0 0 0 0 134450000 123610000 0 0 0 109590000 104600000 93996000 0 0 0 126700000 120800000 107690000 0 0 0 120 348 117 2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270 1328;1329;1330;1331;1332 1328 1 AAIADGAKPSDLNRPGHVFPLR Unmodified 2301.2342 0.23419747 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 24.851 23.82 4 0.00011387 10501 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 76.704 68.9 264000000 0 0 20100000 0 0 0 40543000 36953000 39144000 0 0 0 17376000 17761000 13612000 0 0 0 31963000 22755000 23796000 0 0 0 121 348 118 2271;2272;2273;2274;2275;2276;2277;2278;2279;2280 1333;1334;1335 1335 3 AAIADYK Unmodified 750.3912 0.39120462 721 P0ACD4 iscU Iron-sulfur cluster assembly scaffold protein IscU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 3 3 2 21.984 21.801 2 0.014813 4211 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.386 69.337 2918000000 203340000 196880000 185340000 32985000 34784000 36253000 229240000 238890000 213100000 39263000 46547000 31223000 185800000 178800000 140210000 3261400 2515500 0 250280000 245350000 250280000 68525000 73235000 31899000 122 721 119 2281;2282;2283;2284;2285;2286;2287;2288;2289;2290;2291;2292;2293;2294;2295;2296;2297;2298;2299;2300;2301;2302;2303;2304;2305;2306;2307;2308;2309;2310;2311;2312;2313;2314;2315;2316;2317 1336;1337;1338;1339;1340;1341;1342;1343;1344;1345;1346 1345 11 AAIAEENWLLDDR Unmodified 1514.7365 0.73652168 1520 P39298 yjfP Esterase YjfP yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.614 40.915 2 5.3789E-06 19966 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.51 120.31 115740000 20929000 17705000 17047000 0 0 0 6463500 6758200 8031100 0 0 0 5905300 7167900 5524600 0 0 0 6409400 7610400 6184100 0 0 0 123 1520 120 2318;2319;2320;2321;2322;2323;2324;2325;2326;2327;2328;2329 1347 1347 1 AAIAYGADEVDVVFPYR Unmodified 1854.9152 0.91521432 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 1 2 2 2 49.502 48.175 2;3 1.9093E-11 22528 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 202.65 196.81 1849100000 61985000 54650000 61222000 0 0 0 275960000 272710000 231750000 0 0 0 172410000 161050000 154880000 0 0 1408000 145070000 131510000 124460000 0 0 0 124 257 121 2330;2331;2332;2333;2334;2335;2336;2337;2338;2339;2340;2341;2342;2343;2344;2345;2346;2347;2348;2349;2350;2351;2352;2353 1348;1349;1350;1351;1352;1353;1354;1355;1356;1357;1358;1359;1360;1361;1362;1363 1360 15 AAIDAANR Unmodified 800.41407 0.41406533 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.242 11.874 2 0.00084992 3052 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 120.52 76.101 965240000 150190000 147490000 153770000 907180 0 1447800 108250000 92315000 101500000 3784000 4676100 3089400 23907000 19721000 20690000 0 4907100 5614900 43905000 38965000 34484000 0 5628100 0 125 1258 122 2354;2355;2356;2357;2358;2359;2360;2361;2362;2363;2364;2365;2366;2367;2368;2369;2370;2371;2372;2373 1364;1365;1366;1367;1368;1369;1370;1371;1372 1371 4 AAIDAGAAGAISGSAIVK Unmodified 1541.8413 0.8413211 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.295 31.829 2 0.00013085 14968 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.61 86.577 186350000 42709000 33375000 32992000 0 961460 1270900 8712300 7921000 7432200 0 0 0 7570700 6749400 5963100 0 0 0 10317000 9876000 10506000 0 0 0 126 404 123 2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384;2385;2386;2387 1373;1374;1375;1376 1375 4 AAIDNAIHQAQELANGFHR Unmodified 2075.0297 0.029684005 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 2 2 1 1 2 43.009 41.545 3;4 5.1975E-07 20230 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.96 97.339 229840000 25739000 13450000 23073000 0 0 0 16914000 17882000 15179000 0 0 0 13393000 19433000 21078000 0 0 0 18256000 17920000 27520000 0 0 0 127 803 124 2388;2389;2390;2391;2392;2393;2394;2395;2396;2397;2398;2399;2400;2401;2402;2403;2404 1377;1378;1379;1380;1381;1382;1383;1384;1385;1386;1387;1388 1380 12 AAIDQQLR Unmodified 913.49813 0.49812931 1410 P33218 yebE Inner membrane protein YebE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15 15.617 2 0.0018523 3928 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 105.39 83.863 120160000 9243100 9043400 0 5070000 3875000 4023200 4975800 4218000 3609400 7025000 3965600 3614300 19803000 13921000 1403200 0 0 0 2246400 12676000 3266700 3035900 2585600 2558500 128 1410 125 2405;2406;2407;2408;2409;2410;2411;2412;2413;2414;2415;2416;2417;2418;2419;2420;2421;2422;2423;2424 1389;1390;1391;1392 1390 4 AAIDSIVSA Unmodified 845.44945 0.44944778 1551 P41407 azoR FMN-dependent NADH-azoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 2 2 2 2 1 2 2 1 1 14.477 15.139 2 0.0014256 4140 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 88.734 54.029 306320000 8510300 7756900 5644100 486490 500940 0 14967000 21418000 17889000 65733000 59266000 67091000 8437100 4305100 4874500 0 0 0 8022500 6962100 4454600 0 0 0 129 1551 126 2425;2426;2427;2428;2429;2430;2431;2432;2433;2434;2435;2436;2437;2438;2439;2440;2441;2442;2443;2444;2445;2446;2447;2448;2449 1393;1394;1395;1396;1397 1396 5 AAIEAAGGK Unmodified 786.42357 0.42356738 68 P02413 rplO 50S ribosomal protein L15 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 1 2 2 2 1 1 2 2 2 2 1 1 1 10.919 11.596 2 0.0012676 2842 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 89.296 40.447 6682800000 960300000 890950000 900330000 0 0 0 221530000 204940000 395950000 15845000 0 0 444360000 429090000 424730000 4336500 4927400 0 612950000 563950000 580380000 10545000 8253900 9439000 130 68 127 2450;2451;2452;2453;2454;2455;2456;2457;2458;2459;2460;2461;2462;2463;2464;2465;2466;2467;2468;2469;2470;2471;2472;2473;2474;2475;2476;2477;2478;2479 1398;1399;1400;1401;1402;1403;1404;1405;1406 1401 4 AAIEAAGGKIEE Unmodified 1157.5928 0.59281755 68 P02413 rplO 50S ribosomal protein L15 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.344 18.709 2 0.00013503 5540 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 118.28 101.5 492660000 13035000 15182000 16591000 18238000 18020000 19237000 9659100 9060400 5170900 47992000 31341000 29275000 8792600 9935700 8130900 27443000 25474000 24824000 15414000 14582000 15278000 42255000 35861000 31867000 131 68 128 2480;2481;2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503 1407;1408;1409;1410;1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424;1425;1426;1427;1428;1429 1415 23 AAIELAQR Unmodified 870.49232 0.49231565 469 P0A8X0 yjgA UPF0307 protein YjgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 2 2 1 1 1 16.827 17.647 2 0.00075967 6421 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.34 98.404 196350000 42772000 46011000 38506000 815690 645560 0 0 0 0 0 0 0 21602000 20865000 4382400 0 0 0 0 2774200 17980000 0 0 0 132 469 129 2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514;2515 1430;1431;1432;1433;1434;1435 1432 6 AAIELFR Unmodified 818.46504 0.46503826 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 1 1 1 1 2 1 1 1 1 1 1 1 41.367 40.065 2 0.0021148 14608 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 118.01 61.985 1076500000 22964000 18899000 18132000 0 0 0 14337000 14885000 12196000 71028000 50961000 43005000 10759000 9718600 10233000 163560000 129480000 248630000 13882000 13555000 14286000 76849000 63450000 55636000 133 1355 130 2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526;2527;2528;2529;2530;2531;2532;2533;2534;2535;2536;2537;2538;2539 1436;1437;1438;1439;1440;1441;1442;1443;1444;1445;1446 1446 11 AAIEYAIANDR Unmodified 1205.6041 0.60405094 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.498 24.409 2;3 4.2824E-10 11012 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 180.8 142.51 10756000000 1566900000 1491500000 1392500000 0 0 0 508300000 486660000 547900000 0 0 0 615190000 562620000 581850000 0 0 0 1012100000 1034400000 955900000 0 0 0 134 179 131 2540;2541;2542;2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563 1447;1448;1449;1450;1451;1452;1453;1454;1455;1456;1457;1458;1459;1460;1461;1462;1463;1464;1465;1466;1467;1468;1469;1470;1471;1472;1473;1474 1454 28 AAIEYAIANDRDSVTLVHK Unmodified 2085.0855 0.085467549 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 3 3 3 1 2 2 3 3 3 2 1 2 3 3 3 1 1 1 28.607 27.338 2;3;4 3.9791E-23 12591 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 247.17 239.8 15157000000 2412900000 2003200000 1819800000 16171000 19541000 22621000 771250000 870270000 800520000 2333100 6646800 5245200 693870000 697750000 685210000 4389000 2715300 3302800 1436800000 1554500000 1316200000 4219000 4199200 3100600 135 179 132 2564;2565;2566;2567;2568;2569;2570;2571;2572;2573;2574;2575;2576;2577;2578;2579;2580;2581;2582;2583;2584;2585;2586;2587;2588;2589;2590;2591;2592;2593;2594;2595;2596;2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608;2609;2610;2611;2612;2613;2614;2615;2616;2617;2618 1475;1476;1477;1478;1479;1480;1481;1482;1483;1484;1485;1486;1487;1488;1489;1490;1491;1492;1493;1494;1495;1496;1497;1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510;1511;1512;1513 1498 39 AAIGENILGLR Unmodified 1125.6506 0.6506072 1780 P75825 hcp Hydroxylamine reductase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.973 37.411 2 0.00020541 18521 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 103.8 67.409 95624000 0 1161300 0 0 0 0 12390000 12008000 11169000 0 0 0 13228000 10098000 8501900 760200 0 0 8202700 10647000 7459100 0 0 0 136 1780 133 2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629 1514;1515;1516;1517 1515 3 AAILGAESFGFGTGPMVALGCK Unmodified 2153.0649 0.064931803 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 1 53.923 52.51 2;3 1.0284E-34 25654 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 213.67 189.77 385950000 94260000 84441000 90395000 0 0 0 9658200 15890000 14541000 0 0 0 19110000 20363000 6614500 0 0 0 0 16820000 13856000 0 0 0 137 218 134 2630;2631;2632;2633;2634;2635;2636;2637;2638;2639;2640;2641;2642;2643;2644;2645;2646;2647 1518;1519;1520;1521;1522 1521 4 AAILNTAR Unmodified 828.48175 0.48175096 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.675 15.215 2 0.00011523 4029 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 158.12 85.078 1712800000 34187000 25522000 29699000 1503300 1484800 1852500 177970000 173580000 177090000 59747000 42980000 42549000 102160000 86772000 101880000 56322000 42301000 31681000 168680000 145820000 180700000 9932500 9693400 8648900 138 30 135 2648;2649;2650;2651;2652;2653;2654;2655;2656;2657;2658;2659;2660;2661;2662;2663;2664;2665;2666;2667;2668;2669;2670;2671 1523;1524;1525;1526;1527;1528;1529;1530;1531;1532;1533;1534;1535;1536;1537;1538;1539;1540;1541 1525 19 AAILNYSR Unmodified 906.49232 0.49231565 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.063 20.42 2 0.00024649 8130 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 150.17 118.88 376780000 0 72409000 69129000 0 0 383390 64408000 64043000 64655000 650580 0 0 5051400 0 4943300 0 0 0 10480000 9246200 11378000 0 0 0 139 995 136 2672;2673;2674;2675;2676;2677;2678;2679;2680;2681;2682;2683 1542;1543;1544;1545;1546 1544 4 AAILPAAISFEQAAASFLK Unmodified 1918.0564 0.056399252 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 1 1 1 2 2 1 1 2 1 55.657 54.243 2;3 3.3265E-17 26726 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.63 192.39 1462900000 286000000 269560000 236640000 0 0 0 172460000 134280000 151000000 2717700 1107700 1383300 29508000 47190000 47913000 0 3540300 0 21243000 39492000 18887000 0 0 0 140 1316 137 2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698;2699;2700;2701;2702;2703;2704;2705;2706;2707;2708;2709 1547;1548;1549;1550;1551;1552;1553;1554;1555;1556;1557;1558;1559 1556 13 AAILSNEK Unmodified 844.46543 0.46543219 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 13.647 13.809 2 0.00040535 3479 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 140.98 92.197 4379100000 0 0 0 0 0 0 0 0 8300300 1653800000 1289800000 1393100000 0 0 0 18295000 13991000 1808300 0 0 0 0 0 0 141 497 138 2710;2711;2712;2713;2714;2715;2716 1560;1561;1562;1563;1564;1565 1562 6 AAINAPMQGTAADIIK Unmodified 1583.8341 0.83412723 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.851 33.691 2 4.2689E-06 15919 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.31 112.07 1068500000 83728000 89736000 82658000 0 0 0 102580000 98345000 91408000 0 0 0 77497000 69489000 70093000 7733600 5488100 5141700 93148000 98184000 93295000 0 0 0 142 37 139 2717;2718;2719;2720;2721;2722;2723;2724;2725;2726;2727;2728;2729;2730;2731 1566;1567;1568;1569;1570;1571 1571 6 AAINAPMQGTAADIIKR Unmodified 1739.9352 0.93523826 37 P00582 polA DNA polymerase I yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 1 1 1 1 1 29.138 27.885 2;3 3.2719E-07 8872 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 108.14 99.571 102870000 0 0 0 1989800 1920100 1840700 0 0 0 3608200 4286400 2545000 0 0 0 32052000 23112000 24304000 0 0 0 2361500 2697500 2148100 143 37 140 2732;2733;2734;2735;2736;2737;2738;2739;2740;2741;2742;2743;2744 1572;1573;1574 1573 3 AAISQASDVAALDNVR Unmodified 1599.8216 0.82164829 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 31.317 30.072 2;3 1.3072E-61 14350 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 309.35 266.64 5027000000 477210000 478140000 369970000 0 0 0 337150000 355970000 356250000 0 2485600 0 389270000 385530000 397030000 906630 950070 1238500 512100000 492140000 470620000 0 0 0 144 183 141 2745;2746;2747;2748;2749;2750;2751;2752;2753;2754;2755;2756;2757;2758;2759;2760;2761;2762;2763;2764;2765;2766;2767;2768;2769;2770;2771;2772 1575;1576;1577;1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590;1591;1592;1593;1594;1595;1596;1597;1598;1599 1578 25 AAISSCELLLSETSGTLR Unmodified 1906.967 0.9669919 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.495 41.885 2 6.9786E-29 20287 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 206.32 151.79 140000000 14505000 11641000 10820000 0 0 0 0 15164000 4397500 0 3549900 2614100 8144300 9804300 9130700 0 0 0 18034000 15374000 16821000 0 0 0 145 1617 142 2773;2774;2775;2776;2777;2778;2779;2780;2781;2782;2783;2784;2785 1600;1601;1602;1603;1604;1605 1604 6 AAITAAYR Unmodified 835.4552 0.45520186 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.981 15.544 2 1.5618E-05 5169 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 146.87 107.85 842840000 37873000 41701000 36796000 18892000 18678000 17739000 39774000 50255000 43227000 40476000 31419000 28742000 28221000 28067000 27356000 4177600 2231700 1961300 0 131210000 113980000 0 49685000 50388000 146 215 143 2786;2787;2788;2789;2790;2791;2792;2793;2794;2795;2796;2797;2798;2799;2800;2801;2802;2803;2804;2805;2806;2807;2808;2809 1606;1607;1608;1609;1610;1611;1612;1613;1614;1615;1616;1617;1618;1619 1609 14 AAITAELR Unmodified 843.48142 0.48141661 1800 P75981 jayE Putative protein JayE from lambdoid prophage e14 region yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.997 18.467 2 1.8908E-06 5734 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 189.62 0 2672700000 233050000 246230000 208920000 4406700 0 0 176070000 175850000 159330000 13801000 0 15020000 182860000 174390000 183190000 0 0 0 288240000 312200000 240800000 20885000 19473000 18021000 147 1800 144 2810;2811;2812;2813;2814;2815;2816;2817;2818;2819;2820;2821;2822;2823;2824;2825;2826;2827 1620;1621;1622;1623;1624;1625;1626;1627;1628;1629;1630 1620 10 AAIVGLTK Unmodified 771.48544 0.48543935 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 19.443 19.918 1;2 0.0010836 7955 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 111.82 42.384 912510000 70155000 65890000 69609000 962640 853700 821860 86756000 93738000 86057000 0 0 0 68040000 65891000 68877000 0 0 0 81352000 81193000 72318000 0 0 0 148 1471 145 2828;2829;2830;2831;2832;2833;2834;2835;2836;2837;2838;2839;2840;2841;2842;2843;2844;2845;2846;2847;2848;2849;2850;2851;2852;2853;2854 1631;1632;1633;1634;1635;1636;1637;1638;1639;1640;1641;1642 1632 10 AAIWIEANVK Unmodified 1113.6182 0.61824444 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 34.249 32.783 2 0.00032995 14824 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.12 104.34 178490000 5519000 6632100 0 0 0 0 24495000 23400000 23721000 0 0 0 30165000 14376000 15567000 0 0 0 12136000 12274000 10202000 0 0 0 149 1868 146 2855;2856;2857;2858;2859;2860;2861;2862;2863;2864;2865 1643;1644;1645;1646;1647;1648;1649;1650;1651;1652 1652 10 AALAADITDVIIR Unmodified 1340.7664 0.76636524 1384 P31992 pptA Tautomerase PptA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.117 46.744 2 8.8943E-06 22654 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.6 98.945 348420000 36580000 43003000 36841000 0 0 0 46922000 45232000 36691000 0 0 0 17963000 20832000 19309000 0 0 0 17435000 12566000 15047000 0 0 0 150 1384 147 2866;2867;2868;2869;2870;2871;2872;2873;2874;2875;2876;2877 1653;1654;1655;1656;1657;1658;1659 1658 7 AALAAGGEAAK Unmodified 928.49779 0.49779495 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 11.648 12.325 2 0.00023755 3345 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 99.688 34.436 762290000 82822000 70000000 73744000 11543000 12808000 11768000 60336000 50187000 63061000 14048000 10559000 11145000 42785000 37713000 40423000 0 4423600 0 49702000 56487000 43381000 6093000 4779700 4484900 151 1829 148 2878;2879;2880;2881;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892;2893;2894;2895;2896;2897;2898;2899;2900;2901;2902 1660;1661;1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677;1678 1674 17 AALADFIVDNR Unmodified 1203.6248 0.62478638 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 40.975 39.244 2;3 1.1715E-10 15628 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 196.99 194.93 800550000 11257000 13427000 12137000 862260 0 5201900 59672000 63220000 5507100 43182000 45455000 39317000 49571000 43532000 49690000 11282000 5922700 5587300 84814000 85473000 86325000 26917000 25754000 26448000 152 1492 149 2903;2904;2905;2906;2907;2908;2909;2910;2911;2912;2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927;2928;2929;2930;2931;2932;2933;2934;2935;2936;2937;2938;2939;2940;2941;2942;2943 1679;1680;1681;1682;1683;1684;1685;1686;1687;1688;1689;1690;1691;1692;1693;1694;1695;1696;1697;1698;1699;1700;1701;1702;1703;1704;1705;1706;1707;1708 1680 30 AALAEKPK Unmodified 826.49125 0.49125301 53 P00935 metB Cystathionine gamma-synthase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 9.1233 9.9474 2 0.095951 2327 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 58.604 37.34 64349000 14003000 10050000 9943700 0 0 0 2119700 2248700 2541700 0 0 0 2498800 1944600 1058200 0 0 0 6936300 5448500 5555800 0 0 0 153 53 150 2944;2945;2946;2947;2948;2949;2950;2951;2952;2953;2954;2955 1709;1710;1711 1711 3 AALAGAVNTLMR Unmodified 1186.6492 0.64922699 1114 P15770 aroE Shikimate dehydrogenase (NADP(+)) yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.93 32.49 2 7.7832E-12 15914 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 191.17 168.43 306730000 31965000 26400000 24886000 0 0 0 18520000 17224000 23543000 0 0 0 22376000 19111000 18436000 0 0 0 35244000 34630000 34397000 0 0 0 154 1114 151 2956;2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967 1712;1713;1714;1715;1716;1717;1718;1719;1720;1721 1712 10 AALANLFSELPSK Unmodified 1359.7398 0.73981614 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.796 46.315 2 1.6522E-12 22483 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 193.52 173.76 2604800000 314840000 308140000 281790000 0 0 0 200170000 213750000 189340000 2671700 2731700 0 194790000 152660000 162100000 0 0 0 184380000 194310000 203100000 0 0 0 155 784 152 2968;2969;2970;2971;2972;2973;2974;2975;2976;2977;2978;2979;2980;2981 1722;1723;1724;1725;1726;1727;1728;1729;1730;1731;1732;1733 1726 12 AALANMVQAAQNLR Unmodified 1469.7773 0.77728105 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 39.291 37.598 2;3 5.0396E-35 18626 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 258.47 240.61 1680500000 85568000 93910000 84084000 0 0 0 419810000 407150000 390650000 0 0 0 25916000 17877000 15735000 0 0 0 50333000 46412000 43016000 0 0 0 156 1265 153 2982;2983;2984;2985;2986;2987;2988;2989;2990;2991;2992;2993;2994;2995;2996;2997;2998;2999;3000;3001;3002;3003 1734;1735;1736;1737;1738;1739;1740;1741;1742;1743;1744;1745;1746;1747;1748;1749;1750 1736 13 AALASALGEYFER Unmodified 1396.6987 0.69867961 1782 P75838 ycaO Ribosomal protein S12 methylthiotransferase accessory factor YcaO yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 1 1 1 2 2 2 2 2 2 45.733 44.193 2;3 2.6088E-17 20729 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 255.07 246.85 734910000 0 35355000 33359000 1028300 0 0 61930000 60724000 56584000 2362500 2378800 2349300 61043000 66009000 66688000 0 0 0 98935000 98501000 87667000 0 0 0 157 1782 154 3004;3005;3006;3007;3008;3009;3010;3011;3012;3013;3014;3015;3016;3017;3018;3019;3020;3021;3022;3023;3024;3025;3026;3027;3028 1751;1752;1753;1754;1755;1756;1757;1758;1759;1760 1759 10 AALDAGATEAEMKPIQDDIR Unmodified 2114.0314 0.031383068 667 P0ABK9 nrfA Cytochrome c-552 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 32.723 31.344 3 5.1075E-07 14362 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 79.568 75.974 176490000 0 0 0 0 0 0 0 20970000 0 0 0 0 31901000 29389000 28034000 0 0 0 20413000 20463000 25318000 0 0 0 158 667 155 3029;3030;3031;3032;3033;3034;3035 1761 1761 1 AALEALPGVGR Unmodified 1052.5978 0.59784335 637 P0AB83 nth Endonuclease III yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.066 28.985 2 1.7982E-05 9559 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 138.54 114.59 108320000 6254500 5044800 3170900 0 0 0 2384000 3433600 2940600 0 0 0 8018700 8205400 6575300 14390000 9331300 8252700 8302300 12044000 9968000 0 0 0 159 637 156 3036;3037;3038;3039;3040;3041;3042;3043;3044;3045;3046;3047;3048;3049;3050 1762;1763;1764 1764 3 AALEGADMVFIAAGMGGGTGTGAAPVVAEVAK Unmodified 2888.4412 0.44121464 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 54.587 53.393 3 7.3914E-19 26026 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.01 151.05 627860000 59822000 46671000 58515000 13614000 13492000 18945000 0 0 0 33935000 0 37946000 46758000 38508000 32376000 9742000 9343600 7870600 57836000 53375000 47346000 14056000 12062000 15648000 160 502 157 3051;3052;3053;3054;3055;3056;3057;3058;3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072 1765;1766;1767;1768;1769;1770;1771;1772;1773;1774;1775;1776 1775 12 AALELAEQR Unmodified 999.53491 0.53490874 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20 20.243 2 1.0191E-07 7870 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 183.26 86.225 8006300000 991210000 1005800000 1041100000 32650000 30803000 28850000 390670000 323660000 356980000 76303000 72809000 61356000 464960000 456920000 453420000 34064000 35895000 40492000 715580000 669220000 603410000 46548000 37301000 36292000 161 375 158 3073;3074;3075;3076;3077;3078;3079;3080;3081;3082;3083;3084;3085;3086;3087;3088;3089;3090;3091;3092;3093;3094;3095;3096 1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793;1794;1795;1796;1797;1798;1799 1790 22 AALEQLK Unmodified 771.44905 0.44905385 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.02 15.85 2 0.010727 5391 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.512 29.41 1746500000 175070000 224670000 200410000 1894400 1591700 1912400 145160000 149700000 130870000 0 0 0 132450000 108250000 106200000 0 0 0 131230000 107930000 129190000 0 0 0 162 94 159 3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107;3108;3109;3110;3111 1800;1801;1802;1803;1804 1800 5 AALESAHR Unmodified 853.44061 0.44061443 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 9.9338 10.77 2 9.9959E-07 2406 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 195.98 185.17 489020000 89718000 85520000 78733000 0 0 0 0 0 0 0 0 0 21660000 22259000 16611000 0 0 0 60269000 54558000 59692000 0 0 0 163 1253 160 3112;3113;3114;3115;3116;3117;3118;3119;3120 1805;1806;1807;1808;1809;1810;1811;1812;1813 1809 9 AALESTLAAITESLK Unmodified 1516.8348 0.83483874 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 3 3 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 53.819 52.561 2;3 1.6154E-16 25616 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 202.65 189.53 39577000000 2798400000 2382000000 2678600000 7270400 12492000 17719000 2510800000 2648100000 2746700000 141490000 175990000 163070000 3020400000 2920700000 2410000000 994790000 1983100000 1919300000 3647100000 3105700000 3031900000 85132000 82960000 93290000 164 726 161 3121;3122;3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135;3136;3137;3138;3139;3140;3141;3142;3143;3144;3145;3146;3147;3148;3149;3150;3151;3152;3153;3154;3155;3156;3157;3158;3159;3160;3161;3162;3163;3164;3165;3166;3167;3168;3169;3170 1814;1815;1816;1817;1818;1819;1820;1821;1822;1823;1824;1825;1826;1827;1828;1829;1830;1831;1832;1833;1834;1835;1836;1837;1838;1839;1840;1841;1842;1843;1844;1845;1846 1832 32 AALESTLAAITESLKEGDAVQLVGFGTFK Unmodified 2965.5648 0.56481847 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 3 2 3 2 3 1 3 3 3 2 1 1 3 3 3 1 2 1 3 3 3 55.473 54.274 2;3;4 4.7128E-193 21749 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 444.61 440.17 11332000000 51081000 36493000 37227000 92560000 85695000 90093000 61255000 55214000 38076000 569190000 512130000 567310000 36560000 13101000 8767300 1618300000 3100100000 3214400000 18072000 47412000 14906000 368650000 371670000 323400000 165 726 162 3171;3172;3173;3174;3175;3176;3177;3178;3179;3180;3181;3182;3183;3184;3185;3186;3187;3188;3189;3190;3191;3192;3193;3194;3195;3196;3197;3198;3199;3200;3201;3202;3203;3204;3205;3206;3207;3208;3209;3210;3211;3212;3213;3214;3215;3216;3217;3218;3219;3220;3221;3222;3223 1847;1848;1849;1850;1851;1852;1853;1854;1855;1856;1857;1858;1859;1860;1861;1862;1863;1864;1865;1866;1867;1868;1869;1870;1871;1872;1873;1874;1875;1876 1849 30 AALGSVSYIIHGLMR Unmodified 1586.8603 0.8602824 1857 P76407 yegS Lipid kinase YegS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.772 46.357 3 4.8823E-06 22574 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 90.731 88.431 89044000 12456000 17962000 10416000 0 0 0 9418600 7916000 8716000 0 0 0 3049300 3684900 2178400 0 0 0 5563000 3926000 3757800 0 0 0 166 1857 163 3224;3225;3226;3227;3228;3229;3230;3231;3232;3233;3234;3235 1877;1878;1879 1878 3 AALGVLR Unmodified 698.44391 0.44390889 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 2 1 2 1 1 1 20.93 21.144 2 0.0013909 6944 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 130.84 83.434 3306900000 283460000 254340000 240350000 7137200 4445500 4508900 294300000 281310000 280510000 12065000 18296000 13744000 243160000 199240000 167760000 3834500 4628900 4059300 338620000 319100000 309650000 6467800 9604700 6260600 167 62 164 3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246;3247;3248;3249;3250;3251;3252;3253;3254;3255;3256;3257;3258;3259;3260;3261;3262;3263;3264;3265;3266 1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897;1898;1899;1900;1901;1902;1903 1884 22 AALIDCLAPDR Unmodified 1213.6125 0.61250714 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.463 32.996 2 1.5646E-07 15586 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 169.12 156.9 6070200000 305920000 304110000 282000000 49577000 57615000 41112000 250440000 239390000 248520000 125900000 121140000 102090000 463440000 409540000 419900000 49643000 32044000 40671000 726990000 764800000 826110000 64428000 72911000 71910000 168 480 165 3267;3268;3269;3270;3271;3272;3273;3274;3275;3276;3277;3278;3279;3280;3281;3282;3283;3284;3285;3286;3287;3288;3289;3290 1904;1905;1906;1907;1908;1909;1910;1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928 1919 25 AALIDCLAPDRR Unmodified 1369.7136 0.71361816 480 P0A910 ompA Outer membrane protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 3 2 2 2 1 3 2 2 3 1 2 2 2 2 1 1 1 2 1 2 26.982 25.73 2;3 6.4691E-32 11297 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 225.87 204.4 1083100000 3899700 2559400 0 56722000 60324000 64166000 50334000 55398000 38647000 111570000 99838000 101270000 136860000 4563100 2269700 29659000 23221000 25839000 7414000 8473500 3955500 74104000 60796000 61258000 169 480 166 3291;3292;3293;3294;3295;3296;3297;3298;3299;3300;3301;3302;3303;3304;3305;3306;3307;3308;3309;3310;3311;3312;3313;3314;3315;3316;3317;3318;3319;3320;3321;3322;3323;3324;3325;3326;3327;3328;3329;3330;3331;3332;3333 1929;1930;1931;1932;1933;1934;1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;1950;1951;1952;1953;1954 1953 26 AALIPTVDSAK Unmodified 1084.6128 0.61282471 1895 P77307 fetB Probable iron export permease protein FetB yes yes 0 0 0 By MS/MS 1 28.233 26.436 2 0.1613 9796 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 35.511 30.525 3550600 0 0 0 0 0 0 0 0 0 0 0 3550600 0 0 0 0 0 0 0 0 0 0 0 0 170 1895 167 3334 1955 1955 1 AALISALQTLYPECSIYDR Unmodified 2183.0933 0.093255043 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 53.74 52.451 2;3 1.1129E-09 24888 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 122.1 116.6 391870000 32451000 35979000 31879000 0 0 0 9718800 14017000 9629200 0 0 0 49287000 40047000 38615000 4054300 2860800 0 43435000 42380000 37517000 0 0 0 171 1787 168 3335;3336;3337;3338;3339;3340;3341;3342;3343;3344;3345;3346;3347;3348;3349;3350;3351;3352;3353;3354;3355;3356;3357 1956;1957;1958;1959;1960;1961;1962 1961 4 AALMMGINR Oxidation (M) 991.49431 0.49430626 274 P0A6R3 fis DNA-binding protein Fis yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 2 2 2 2 1 1 1 1 1 22.22 21.824 2 0.0072287 6356 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 73.637 62.809 46046000 0 0 0 0 0 0 0 0 0 2352400 1511000 1530100 0 0 0 7018100 5874500 5061900 2931300 2746100 11955000 1693200 1302900 2070400 172 274 169 3358;3359;3360;3361;3362;3363;3364;3365;3366;3367;3368;3369;3370;3371;3372;3373;3374 1963;1964;1965;1966;1967;1968 1965 132 4 AALMMGINR Unmodified 975.49939 0.49939163 274 P0A6R3 fis DNA-binding protein Fis yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.66 26.549 2 8.8269E-06 8329 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 168.38 152.94 3066900000 0 115620000 121820000 0 0 211200 0 0 0 36898000 43906000 38924000 289450000 345930000 280030000 172250000 143910000 146490000 397190000 368440000 373740000 57044000 62171000 72819000 173 274 169 3375;3376;3377;3378;3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391;3392;3393;3394;3395 1969;1970;1971;1972;1973;1974;1975;1976;1977;1978;1979;1980;1981;1982;1983;1984;1985;1986;1987;1988 1970 19 AALNADCDGQAGLQELAGNATMLFYMTEEGQEGR Unmodified 3630.6025 0.60249567 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.429 53.992 3 1.1191E-43 21725 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 206.58 206.58 454540000 28167000 20082000 17454000 17868000 21563000 21704000 17801000 20628000 18530000 0 0 0 28004000 26631000 27458000 0 0 0 30773000 33171000 23187000 35487000 34907000 31121000 174 679 170 3396;3397;3398;3399;3400;3401;3402;3403;3404;3405;3406;3407;3408;3409;3410;3411;3412;3413 1989;1990;1991 1991 3 AALPLNHLVAK Unmodified 1145.6921 0.69207809 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 23.859 23.03 2;3 0.00028722 9992 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.85 108.58 1760800000 504950000 431400000 364860000 4133000 3465500 4394700 43672000 40043000 37687000 0 0 0 49370000 45354000 45815000 0 665800 0 64205000 60993000 59764000 0 0 0 175 404 171 3414;3415;3416;3417;3418;3419;3420;3421;3422;3423;3424;3425;3426;3427;3428;3429;3430;3431;3432;3433;3434;3435;3436;3437;3438 1992;1993;1994;1995;1996;1997;1998;1999;2000;2001;2002;2003;2004;2005;2006;2007;2008 2000 17 AALQISQSGQTCALLSK Unmodified 1774.9247 0.92473315 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 1 32.636 31.231 2;3 5.1229E-19 10678 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 194.7 181.5 896020000 51565000 42406000 39911000 22008000 17661000 18783000 42307000 39636000 37244000 9166100 11845000 7589700 60453000 53979000 52926000 3544800 3331700 3838700 113490000 110010000 98920000 22135000 19056000 14216000 176 698 172 3439;3440;3441;3442;3443;3444;3445;3446;3447;3448;3449;3450;3451;3452;3453;3454;3455;3456;3457;3458;3459;3460;3461;3462;3463;3464;3465;3466;3467;3468;3469;3470;3471;3472;3473;3474;3475;3476;3477;3478;3479;3480;3481;3482;3483 2009;2010;2011;2012;2013;2014;2015;2016;2017;2018;2019;2020;2021;2022;2023;2024;2025;2026;2027;2028;2029;2030;2031;2032;2033;2034;2035 2029 27 AALQNTILK Unmodified 970.58113 0.58113065 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.095 22.46 2 0.00011938 7038 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 133.6 108.97 1712400000 60720000 62490000 54644000 19158000 23901000 18701000 119200000 117490000 121600000 51375000 41434000 48035000 126820000 102130000 102950000 9136400 10170000 8232300 144610000 179950000 167390000 38262000 42734000 41216000 177 1426 173 3484;3485;3486;3487;3488;3489;3490;3491;3492;3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504;3505;3506;3507 2036;2037;2038;2039;2040;2041;2042;2043;2044;2045;2046;2047;2048;2049 2045 14 AALSMIVEAEK Unmodified 1160.6111 0.61111015 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 32.704 31.439 2 0.00027555 14851 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 117.53 71.192 199400000 0 33727000 30538000 0 0 0 0 0 0 0 0 0 39892000 46674000 0 0 0 0 0 0 48570000 0 0 0 178 1133 174 3508;3509;3510;3511;3512 2050;2051;2052;2053;2054 2051 5 AALTLEDLR Unmodified 1000.5553 0.55530983 1984 yes no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 1 2 2 2 2 2 1 39.498 38.001 2 0.0010528 14880 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 94.407 68.236 1883900000 3356400 0 3084400 0 0 0 2342600 2401700 0 80264000 96693000 53274000 0 0 0 450810000 405640000 405870000 0 0 0 157370000 150120000 72679000 + + 179 1984 175 3513;3514;3515;3516;3517;3518;3519;3520;3521;3522;3523;3524;3525;3526;3527;3528;3529;3530;3531;3532 2055;2056;2057;2058;2059;2060;2061 2059 7 AALTLEDLRR Unmodified 1156.6564 0.65642086 1984 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 29.497 28.238 2 0.00026583 9119 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 142.64 118.68 1895700000 0 0 0 0 0 610030 0 0 0 39849000 71226000 69882000 0 0 0 565590000 334040000 329560000 0 0 0 157240000 176260000 151440000 + + 180 1984 176 3533;3534;3535;3536;3537;3538;3539;3540;3541;3542;3543;3544;3545;3546;3547;3548;3549;3550 2062;2063;2064;2065;2066;2067;2068;2069;2070 2065 8 AALTQPLNALR Unmodified 1166.6772 0.6771563 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.733 30.349 2 2.681E-10 11354 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 189.14 181.21 1587200000 60946000 65365000 59352000 37397000 32875000 33130000 57172000 51919000 59209000 51618000 50000000 51704000 46268000 58355000 49653000 21703000 15276000 15480000 147490000 159130000 168420000 96756000 97014000 101000000 181 215 177 3551;3552;3553;3554;3555;3556;3557;3558;3559;3560;3561;3562;3563;3564;3565;3566;3567;3568;3569;3570;3571;3572;3573;3574 2071;2072;2073;2074;2075;2076;2077;2078;2079;2080;2081;2082;2083;2084;2085;2086;2087;2088;2089;2090;2091;2092;2093 2080 23 AALVDHDNIK Unmodified 1094.572 0.57202253 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1 2 2 2 1 1 2 2 1 2 2 2 2 1 12.371 13.134 2;3 4.9296E-09 3864 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 193.1 178.43 15128000000 3600300000 3643200000 3749200000 7698900 3122900 546270 934880000 852530000 385840000 1197300 985990 1806400 249130000 141410000 251730000 0 0 0 250310000 556290000 497450000 0 0 281310 182 943 178 3575;3576;3577;3578;3579;3580;3581;3582;3583;3584;3585;3586;3587;3588;3589;3590;3591;3592;3593;3594;3595;3596;3597;3598;3599;3600;3601;3602;3603;3604;3605;3606;3607 2094;2095;2096;2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107;2108;2109;2110;2111;2112;2113;2114;2115 2111 22 AALWNETK Unmodified 931.47633 0.47633123 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.238 20.424 2 0.0029529 6732 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 96.19 77.506 2531900000 1534700 1721200 0 2860900 2416200 2005400 188810000 170090000 177760000 135110000 121710000 103500000 191340000 178150000 133500000 23861000 22911000 24908000 282570000 243440000 265400000 92420000 81133000 84740000 183 594 179 3608;3609;3610;3611;3612;3613;3614;3615;3616;3617;3618;3619;3620;3621;3622;3623;3624;3625;3626;3627;3628;3629;3630 2116;2117;2118;2119;2120;2121;2122;2123;2124;2125;2126;2127 2119 11 AALWNETKDK Unmodified 1174.5982 0.59823728 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 15.472 15.591 2 0.0019156 4159 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 86.67 82.726 23449000 0 0 0 0 0 0 0 0 0 3543900 3469500 3297900 0 0 0 1349700 0 0 0 0 0 4516600 3256900 4014700 184 594 180 3631;3632;3633;3634;3635;3636;3637 2128;2129;2130;2131;2132 2130 5 AAMEDVLK Unmodified 875.44225 0.44225391 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 22.483 21.921 1;2 0.0097902 6718 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 79.469 61.702 6871700000 951470000 928220000 817510000 8245400 6826400 5437100 600250000 557900000 570300000 0 0 0 396480000 334930000 328040000 0 0 0 459700000 441530000 460790000 0 4028700 0 185 1577 181 3638;3639;3640;3641;3642;3643;3644;3645;3646;3647;3648;3649;3650;3651;3652;3653;3654;3655;3656;3657;3658;3659;3660;3661;3662;3663;3664;3665 2133;2134;2135;2136;2137;2138;2139;2140;2141;2142;2143;2144;2145;2146;2147;2148;2149;2150 2143 14 AAMESGAITLK Unmodified 1090.5692 0.56924534 923 P0AFA7 nhaB Na(+)/H(+) antiporter NhaB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 23.1 22.383 2 0.011323 9028 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 62.823 39.804 15480000 0 3475800 0 0 0 0 0 0 0 0 1884300 2678800 0 0 3143800 0 0 0 0 0 4297200 0 0 0 186 923 182 3666;3667;3668;3669;3670 2151 2151 1 AAMESGVATR Unmodified 991.47568 0.4756793 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.015 12.848 2 0.0020888 3626 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 93.178 57.822 754330000 106890000 110530000 111370000 0 0 0 43669000 46921000 51997000 0 0 0 47037000 34200000 42407000 0 0 0 50175000 57120000 52008000 0 0 0 187 1872 183 3671;3672;3673;3674;3675;3676;3677;3678;3679;3680;3681;3682 2152 2152 0 AAMESGVATRPIADFDVYIDK Unmodified 2268.1096 0.10963339 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 1 2 2 2 42.193 40.456 2;3 4.0748E-34 19617 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 209.7 184.74 1535900000 245520000 250810000 233650000 0 0 0 85967000 91279000 86649000 0 0 2710500 71794000 71727000 52861000 0 0 0 113980000 110370000 118620000 0 0 0 188 1872 184 3683;3684;3685;3686;3687;3688;3689;3690;3691;3692;3693;3694;3695;3696;3697;3698;3699;3700;3701;3702;3703;3704;3705;3706 2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164 2164 12 AAMSGMLSPELK Unmodified 1233.6097 0.60972994 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.572 31.224 2 2.6728E-08 14580 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.34 162.32 1053000000 162910000 162870000 146440000 6547900 6710000 6316600 0 0 0 18339000 17114000 19146000 73398000 70337000 74850000 26368000 18011000 19860000 69131000 68535000 67381000 5349900 6763400 6593500 189 297 185 3707;3708;3709;3710;3711;3712;3713;3714;3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727 2165;2166;2167;2168;2169;2170;2171;2172;2173;2174;2175;2176;2177;2178;2179;2180;2181;2182;2183;2184 2181 20 AAMTVAALCEK Unmodified 1163.5679 0.56786513 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 25.113 24.038 2 1.8772E-05 10900 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.69 128.83 395910000 0 0 0 0 0 0 45153000 46572000 46451000 0 0 0 38700000 0 37530000 0 0 0 61289000 61258000 58962000 0 0 0 190 1586 186 3728;3729;3730;3731;3732;3733;3734;3735 2185;2186;2187;2188;2189;2190 2186 6 AAMVLLK Unmodified 744.45678 0.45678176 1724 P68739 nfi Endonuclease V yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 24.786 23.877 2 0.030054 11009 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 66.994 50.067 133880000 13918000 13094000 11641000 1315100 509740 586610 10700000 13056000 2912500 0 0 693350 5697600 5007600 4615500 4452800 4354600 6274300 11876000 9566400 12132000 0 0 1477400 191 1724 187 3736;3737;3738;3739;3740;3741;3742;3743;3744;3745;3746;3747;3748;3749;3750;3751;3752;3753;3754;3755;3756;3757 2191;2192;2193;2194;2195;2196 2191 6 AAMVTVAK Unmodified 789.44186 0.44185998 211 P09372 grpE Protein GrpE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.975 14.503 2 0.0097902 4492 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.469 38.347 5202500000 405570000 307800000 271210000 0 0 0 450480000 499220000 508860000 68552000 68160000 57933000 396150000 370320000 337250000 9820800 6898500 6117400 445310000 497510000 450250000 15081000 14802000 15250000 192 211 188 3758;3759;3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776;3777;3778 2197;2198;2199;2200;2201;2202;2203;2204;2205;2206 2201 10 AAMVTVAK Oxidation (M) 805.43677 0.4367746 211 P09372 grpE Protein GrpE yes yes 0 1 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.248 12.081 2 0.034802 3141 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.567 41.419 643410000 35282000 39128000 37833000 0 0 0 75491000 72192000 71409000 0 0 0 50575000 46882000 46354000 0 0 0 65757000 49069000 53441000 0 0 0 193 211 188 3779;3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790 2207;2208;2209;2210;2211;2212;2213 2207 68 2 AANAEPLLMQIR Unmodified 1325.7126 0.71255553 776 P0ADA1 tesA Acyl-CoA thioesterase I yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.287 36.613 2 0.00075445 18341 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 80.755 76.419 246980000 33084000 37112000 43910000 0 0 0 16490000 20096000 17243000 0 0 0 12603000 11817000 10797000 0 0 0 14133000 16377000 13317000 0 0 0 194 776 189 3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802 2214;2215 2214 1 AANAGGVATSGLEMAQNAAR Unmodified 1858.8956 0.89555829 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 2 2 2 31.878 30.554 2;3 7.7616E-68 14279 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 296.22 287.92 1063200000 301540000 312060000 264150000 0 0 0 22459000 36673000 0 0 0 0 0 8904600 10315000 0 0 0 36274000 39887000 30894000 0 0 0 195 26 190 3803;3804;3805;3806;3807;3808;3809;3810;3811;3812;3813;3814;3815;3816;3817;3818;3819 2216;2217;2218;2219;2220;2221;2222;2223 2221 8 AANANVVFFDGITAGEK Unmodified 1722.8577 0.85769944 93 P04816 livK Leucine-specific-binding protein yes yes 0 0 0 By matching By MS/MS 1 1 43.295 41.962 2 3.5292E-06 20331 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 91.858 85.886 6560500 0 2859800 3700700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 196 93 191 3820;3821 2224 2224 1 AANAWPMLSADEER Unmodified 1559.7038 0.70384134 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 36.761 36.389 2 1.2963E-08 13209 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 154.15 150.1 82621000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37292000 22326000 21669000 1333400 0 0 0 0 0 197 1004 192 3822;3823;3824;3825 2225;2226;2227 2225 3 AANDDLLNSFWLLDSEK Unmodified 1949.9371 0.93707198 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 55.158 53.677 2;3 2.4006E-31 26293 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 179.9 178.37 20473000000 652350000 633670000 620520000 0 0 0 3082700000 3250300000 3039600000 12772000 11750000 13447000 1903600000 1936900000 2097400000 0 0 0 1140400000 1078600000 999570000 0 0 0 198 1717 193 3826;3827;3828;3829;3830;3831;3832;3833;3834;3835;3836;3837;3838;3839;3840;3841;3842;3843;3844;3845;3846;3847;3848;3849;3850;3851;3852 2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240;2241;2242;2243;2244;2245;2246 2235 19 AANDDLLNSFWLLDSEKGEAR Unmodified 2363.1394 0.13935361 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 52.462 51.268 2;3 6.0847E-173 25391 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 435.16 415.76 21837000000 650970000 632650000 663180000 22651000 27416000 33870000 3356200000 3375400000 3384400000 263490000 256650000 239780000 1850100000 1836000000 1680800000 42521000 65886000 86612000 1081300000 1067500000 1114400000 41615000 33319000 30332000 199 1717 194 3853;3854;3855;3856;3857;3858;3859;3860;3861;3862;3863;3864;3865;3866;3867;3868;3869;3870;3871;3872;3873;3874;3875;3876;3877;3878;3879;3880;3881;3882;3883;3884;3885;3886;3887;3888;3889;3890;3891 2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270;2271;2272;2273;2274;2275;2276;2277;2278;2279;2280;2281;2282;2283;2284;2285 2257 39 AANHQIIGSSQMYATAQSR Unmodified 2032.9749 0.97487124 1855 P76402 yegP UPF0339 protein YegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 2 1 1 1 1 1 1 19.825 20.28 2;3 5.4115E-37 7776 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 231.06 227.46 1064400000 259990000 237870000 279990000 1808900 429090 0 86621000 80768000 72813000 0 0 0 7272900 5007100 5759000 0 0 0 8957000 9977400 7116800 0 0 0 200 1855 195 3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902;3903;3904;3905;3906;3907;3908;3909;3910;3911 2286;2287;2288;2289;2290;2291;2292;2293;2294;2295;2296;2297;2298;2299 2294 14 AANIIGIQIEFAK Unmodified 1386.7871 0.78710068 68 P02413 rplO 50S ribosomal protein L15 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 47.417 46.106 2;3 4.4576E-07 22396 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 147.74 140.81 1825000000 170080000 154290000 135560000 22651000 24515000 20822000 101170000 102390000 79503000 25843000 24342000 25531000 102830000 83094000 85728000 36812000 25414000 30893000 156770000 152200000 140270000 41836000 43881000 38538000 201 68 196 3912;3913;3914;3915;3916;3917;3918;3919;3920;3921;3922;3923;3924;3925;3926;3927;3928;3929;3930;3931;3932;3933;3934;3935;3936;3937;3938;3939;3940;3941;3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952;3953;3954;3955;3956;3957;3958 2300;2301;2302;2303;2304;2305;2306;2307;2308;2309;2310;2311;2312;2313;2314;2315;2316;2317;2318;2319;2320;2321;2322;2323;2324;2325;2326;2327;2328;2329;2330;2331;2332;2333;2334;2335;2336;2337;2338;2339;2340;2341;2342;2343;2344;2345 2318 45 AANIILHCEGK Unmodified 1224.6285 0.62849155 1135 P17115 gutQ Arabinose 5-phosphate isomerase GutQ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 1 1 1 1 1 1 1 14.689 15.435 2;3 5.4162E-05 4777 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.6 108.61 252600000 16142000 23203000 15316000 0 0 0 44480000 49689000 14944000 0 0 0 12402000 14348000 12521000 0 0 0 15408000 15756000 18393000 0 0 0 202 1135 197 3959;3960;3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971;3972 2346;2347;2348;2349;2350;2351;2352 2351 7 AANIIVK Unmodified 727.45922 0.4592246 452 P0A8Q0 frdC Fumarate reductase subunit C yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.696 15.228 2 0.010309 4904 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.935 50.106 489150000 9045700 9422300 9880000 0 0 575640 79948000 80785000 63165000 11879000 7321700 8362100 45864000 43876000 42431000 3130900 1998700 1403100 21398000 22045000 21179000 1926500 1971700 1543100 203 452 198 3973;3974;3975;3976;3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992;3993;3994 2353;2354;2355;2356;2357;2358;2359 2356 5 AANIIVKDEK Unmodified 1099.6237 0.62372375 452 P0A8Q0 frdC Fumarate reductase subunit C yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 2 12.311 12.878 2;3 8.452E-06 3086 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 156.35 135.79 256940000 2178400 0 0 4353500 4163200 4743700 20168000 20984000 20985000 35119000 30484000 27446000 15644000 6676200 6290600 9980500 7406700 7805200 4169000 6595300 5355000 6146400 3447100 6796400 204 452 199 3995;3996;3997;3998;3999;4000;4001;4002;4003;4004;4005;4006;4007;4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021;4022;4023;4024;4025;4026;4027;4028;4029;4030;4031 2360;2361;2362;2363;2364;2365;2366;2367 2362 8 AANKFPAIIYGGK Unmodified 1348.7503 0.75032125 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 27.714 26.531 2;3 4.1025E-06 12506 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 170.5 166.91 2881400000 364140000 354140000 301270000 23845000 25795000 23790000 25472000 95715000 20848000 51827000 57838000 47830000 130550000 142420000 140410000 51275000 32320000 33693000 257950000 245910000 261180000 60460000 71624000 61094000 205 1726 200 4032;4033;4034;4035;4036;4037;4038;4039;4040;4041;4042;4043;4044;4045;4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057;4058;4059;4060;4061;4062;4063;4064;4065;4066;4067;4068;4069;4070;4071;4072;4073;4074 2368;2369;2370;2371;2372;2373;2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384;2385;2386;2387;2388;2389;2390;2391;2392;2393;2394;2395;2396;2397;2398;2399;2400;2401;2402;2403;2404;2405;2406;2407;2408;2409 2382 40 AANYPFIADDMDNLVLPASLKPLQHK Unmodified 2880.4844 0.48440008 414 P0A8A4 ppsR Phosphoenolpyruvate synthase regulatory protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 1 2 2 1 1 1 1 1 2 1 1 50.525 49.122 3;4 0.033757 24000 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 39.124 38.912 349420000 29306000 44498000 50443000 0 0 0 25761000 32489000 30828000 0 5074300 4160400 22516000 16096000 14160000 0 0 0 30047000 21582000 22459000 0 0 0 206 414 201 4075;4076;4077;4078;4079;4080;4081;4082;4083;4084;4085;4086;4087;4088;4089;4090;4091;4092 2410;2411;2412 2411 3 AAPAPAAAAPK Unmodified 934.52362 0.52361577 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 12.25 12.519 2 0.0016037 2754 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 101.6 32.814 1175600000 0 0 0 0 0 0 571830000 0 0 0 128170000 141960000 0 0 0 127490000 97597000 104530000 0 0 4066900 0 0 0 207 1745 202 4093;4094;4095;4096;4097;4098;4099 2413;2414 2413 0 AAPATPAAPAQPGLLSR Unmodified 1587.8733 0.87328993 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.728 27.26 2 1.8573E-08 10484 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 114.24 97.326 345770000 43233000 37287000 32160000 5503600 5668100 5759700 16940000 23341000 19325000 4948800 4592000 4452700 15319000 13402000 15684000 0 0 0 28420000 32361000 27145000 3995400 3732200 2501500 208 1183 203 4100;4101;4102;4103;4104;4105;4106;4107;4108;4109;4110;4111;4112;4113;4114;4115;4116;4117;4118;4119;4120 2415;2416;2417;2418;2419;2420;2421;2422;2423 2415 9 AAPCIIFIDEIDAVGR Unmodified 1758.8975 0.89745577 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 2 1 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 54.614 53.17 2;3 1.6767E-08 26422 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.76 121.59 929570000 28946000 23756000 21862000 2393600 3724900 0 94434000 78048000 73674000 41608000 6388600 32072000 73555000 65658000 60975000 0 0 0 102630000 72676000 71302000 27696000 28038000 20135000 209 595 204 4121;4122;4123;4124;4125;4126;4127;4128;4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142;4143;4144;4145;4146;4147;4148;4149;4150;4151;4152;4153;4154;4155 2424;2425;2426;2427;2428;2429;2430 2425 5 AAPDVQLLMNDSQNDQSK Unmodified 1972.916 0.91601896 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.407 33.856 2;3 4.0049E-29 16603 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 276.28 276.17 2215300000 617670000 616590000 567850000 0 0 0 44567000 41374000 38129000 0 0 0 42451000 25654000 42146000 0 0 0 58642000 61894000 58335000 0 0 0 210 852 205 4156;4157;4158;4159;4160;4161;4162;4163;4164;4165;4166;4167;4168;4169;4170;4171;4172;4173;4174;4175;4176;4177;4178;4179 2431;2432;2433;2434;2435;2436;2437;2438;2439;2440;2441;2442;2443;2444;2445;2446 2431 16 AAPEITR Unmodified 756.413 0.41300269 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 1 1 1 1 1 1 12.524 12.935 2 0.001881 2994 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 122.15 101.17 369370000 0 0 21613000 11954000 13201000 14548000 154110000 0 0 23345000 27160000 25448000 0 0 0 6175200 4125400 5267600 0 0 0 22358000 20553000 19515000 211 649 206 4180;4181;4182;4183;4184;4185;4186;4187;4188;4189;4190;4191;4192;4193;4194;4195 2447;2448;2449 2449 3 AAPGYYLAK Unmodified 952.50182 0.5018177 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.139 20.414 2 0.007632 6721 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 66.682 59.269 1197600000 35601000 20311000 22905000 987610 1044700 0 137400000 119820000 152710000 56549000 46293000 43618000 76609000 61950000 60798000 0 0 0 116350000 113150000 116910000 0 14566000 0 212 30 207 4196;4197;4198;4199;4200;4201;4202;4203;4204;4205;4206;4207;4208;4209;4210;4211;4212;4213 2450;2451;2452 2450 3 AAPLCNGDPDDLILK Unmodified 1610.7974 0.79740737 1330 P29208 menC o-succinylbenzoate synthase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.606 36.933 2 0.00026095 17806 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 77.062 73.045 131110000 8943200 5978800 5496100 0 0 0 12997000 10515000 9669900 0 0 0 9593200 8867200 9033600 0 0 0 19031000 15932000 15054000 0 0 0 213 1330 208 4214;4215;4216;4217;4218;4219;4220;4221;4222;4223;4224;4225 2453;2454;2455;2456;2457;2458;2459 2457 4 AAPLTTQTIDEFK Unmodified 1433.7402 0.74021007 229 P0A6C1 nfo Endonuclease 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 33.711 32.725 2 3.9418E-07 14933 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 148.91 85.868 482540000 69981000 63871000 60687000 0 0 0 56075000 0 0 0 0 0 53766000 47021000 50463000 4192200 3168700 3509900 0 69805000 0 0 0 0 214 229 209 4226;4227;4228;4229;4230;4231;4232;4233;4234;4235;4236 2460;2461;2462;2463;2464;2465;2466;2467;2468;2469 2468 8 AAPNTIPTAAK Unmodified 1053.5819 0.58185893 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.158 14.974 2 0.00024071 4885 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.89 103.73 470650000 77262000 76050000 68424000 0 640110 0 37009000 38584000 34698000 0 0 354360 19612000 21043000 22703000 0 0 0 24988000 24131000 25153000 0 0 0 215 636 210 4237;4238;4239;4240;4241;4242;4243;4244;4245;4246;4247;4248;4249;4250 2470;2471;2472;2473;2474;2475;2476;2477;2478;2479;2480;2481 2476 12 AAPSYEELSNSQELLETGIK Unmodified 2178.0692 0.069208362 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 44.062 42.567 2;3 2.7777E-23 17269 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 253.16 242.68 6900100000 225700000 194780000 188450000 30966000 52086000 40732000 488390000 458220000 421220000 154090000 123560000 115040000 649710000 594270000 609920000 80997000 48661000 45958000 640790000 691010000 711130000 113540000 108080000 112810000 216 646 211 4251;4252;4253;4254;4255;4256;4257;4258;4259;4260;4261;4262;4263;4264;4265;4266;4267;4268;4269;4270;4271;4272;4273;4274;4275;4276;4277;4278;4279;4280;4281;4282;4283;4284;4285;4286;4287;4288;4289;4290;4291;4292;4293;4294;4295;4296;4297;4298 2482;2483;2484;2485;2486;2487;2488;2489;2490;2491;2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526;2527;2528;2529 2488 48 AAPTGKAYVVQLGALK Unmodified 1585.9192 0.91917749 216 P09549 dedD Cell division protein DedD yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 32.195 30.39 3;4 0.16057 10359 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 8.1245 2.2294 2928100000 0 0 0 629290000 530470000 605310000 0 0 0 141510000 118350000 132810000 0 0 0 1870300 0 0 0 0 0 273880000 239660000 255000000 217 216 212 4299;4300;4301;4302;4303;4304;4305;4306;4307;4308;4309;4310;4311;4312;4313;4314;4315;4316;4317 2530;2531;2532 2530 3 AAPTPAKPMGPNDYMVIGLAR Unmodified 2169.1075 0.10746532 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 37.855 36.236 2;3 3.598E-28 18067 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 200.77 192.17 4000700000 89814000 88006000 89190000 15373000 15552000 19078000 419990000 437020000 410140000 197940000 184270000 188450000 244260000 215940000 241430000 160860000 93373000 85672000 200660000 212670000 222300000 57178000 53029000 58545000 218 1745 213 4318;4319;4320;4321;4322;4323;4324;4325;4326;4327;4328;4329;4330;4331;4332;4333;4334;4335;4336;4337;4338;4339;4340;4341;4342;4343;4344;4345;4346;4347;4348;4349;4350;4351;4352;4353;4354;4355;4356;4357;4358;4359;4360;4361;4362;4363;4364 2533;2534;2535;2536;2537;2538;2539;2540;2541;2542;2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562 2542 30 AAPTPAKPMGPNDYMVIGLAR Oxidation (M) 2185.1024 0.10237994 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 2 1 1 2 2 2 1 2 2 35.082 33.31 3 8.6233E-07 16241 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 95.958 95.613 142440000 0 0 0 0 0 0 20850000 27497000 14600000 7515500 9495600 11740000 0 4479800 0 0 1522000 0 10854000 12417000 10895000 1999800 3267100 5306500 219 1745 213 4365;4366;4367;4368;4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381;4382;4383;4384;4385 2563;2564;2565;2566;2567 2566 601 5 AAPVELR Unmodified 754.43374 0.43373813 406 P0A881 trpR Trp operon repressor yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.87 15.732 2 0.12118 3857 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 50.025 13.558 143740000 30002000 42373000 30952000 2082500 2155700 2166600 0 0 0 0 0 0 0 7121200 0 0 0 0 9183000 7501000 10201000 0 0 0 220 406 214 4386;4387;4388;4389;4390;4391;4392;4393;4394;4395 2568;2569 2568 1 AAPVIRPNKK Unmodified 1092.6768 0.67676237 316 P0A780 nusB N utilization substance protein B yes yes 0 0 2 By MS/MS 1 10.684 10.84 2 7.1794E-05 2096 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 107.59 107.59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 221 316 215 4396 2570 2570 1 AAQATQAR Unmodified 815.42496 0.42496436 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 5.4665 6.2767 2 0.000249 1373 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.02 114.91 482880000 42936000 42012000 40406000 0 0 0 112080000 127210000 118240000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 222 1805 216 4397;4398;4399;4400;4401;4402;4403 2571;2572;2573;2574;2575;2576;2577 2574 6 AAQCLLGENDFTSFR Unmodified 1727.7937 0.79371898 166 P07649 truA tRNA pseudouridine synthase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 42.194 40.467 2 0.010128 19761 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.279 75.692 838900000 294230000 266000000 5174400 0 0 0 55982000 46082000 49123000 0 0 0 17559000 14825000 0 0 0 0 31853000 28600000 29478000 0 0 0 223 166 217 4404;4405;4406;4407;4408;4409;4410;4411;4412;4413;4414 2578 2578 1 AAQDIIWQESPWIPLVVEK Unmodified 2221.1783 0.1783053 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.129 53.655 2 0.00017044 26415 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.75 94.869 155780000 19196000 12828000 18456000 0 0 0 12718000 8942200 14612000 0 0 0 10010000 11647000 9740700 0 0 0 11682000 13441000 12506000 0 0 0 224 1774 218 4415;4416;4417;4418;4419;4420;4421;4422;4423;4424;4425;4426 2579 2579 1 AAQEDILK Unmodified 886.476 0.47599688 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.85 16.666 2 0.00098544 5846 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.78 86.676 2225900000 230740000 247860000 200110000 0 0 0 200140000 205510000 179760000 0 0 0 128300000 132700000 110450000 0 0 0 203810000 189890000 196570000 0 0 0 225 58 219 4427;4428;4429;4430;4431;4432;4433;4434;4435;4436;4437;4438 2580;2581;2582;2583;2584;2585;2586;2587;2588;2589;2590;2591 2586 11 AAQEEEFSLELR Unmodified 1420.6834 0.68342347 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 1 1 1 3 2 2 2 2 2 36.525 34.855 2;3 3.511E-08 16258 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 187.64 183.03 1579000000 0 100160000 102830000 2890000 2543600 2415800 153330000 157720000 144770000 0 2736500 1604000 165800000 135180000 115990000 0 0 0 167540000 167020000 156460000 0 0 0 226 674 220 4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450;4451;4452;4453;4454;4455;4456;4457;4458;4459;4460;4461;4462;4463 2592;2593;2594;2595;2596;2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608;2609;2610;2611;2612;2613;2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624 2618 33 AAQEIVNSGK Unmodified 1015.5298 0.52982336 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.654 12.495 2 3.2067E-05 3337 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 144.09 106.53 1114000000 59771000 73011000 76153000 622950 538400 791350 195330000 157880000 170610000 0 0 1661400 66178000 53668000 69054000 0 0 0 68935000 65065000 54743000 0 0 0 227 145 221 4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478;4479 2625;2626;2627;2628;2629;2630;2631;2632;2633;2634;2635 2626 10 AAQEVANHLGTVHHEIHFTVQEGLDAIR Unmodified 3091.5588 0.55877909 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 3 3 3 3 3 3 2 2 2 3 2 2 33.433 31.969 3;4;5 1.5774E-80 15374 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 283.41 272.65 1914300000 215520000 192210000 157240000 0 0 0 381510000 375090000 379670000 0 0 0 24973000 25420000 20797000 0 0 0 45894000 45111000 50849000 0 0 0 228 1191 222 4480;4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497;4498;4499;4500;4501;4502;4503;4504;4505;4506;4507;4508;4509;4510 2636;2637;2638;2639;2640;2641;2642;2643;2644;2645;2646;2647;2648;2649;2650;2651;2652;2653 2643 18 AAQGDITAPGGAR Unmodified 1183.5945 0.59454889 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 1 1 1 1 2 2 2 1 1 1 13.471 14.145 2;3 5.7839E-09 4103 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 168.9 167.09 12275000000 0 0 0 3437800 3569500 3465600 1673300000 1601600000 1516100000 4573700 0 0 1364500000 0 1194200000 7377200 4089900 4135300 1569400000 1538000000 1769700000 5578300 5870000 5897200 229 38 223 4511;4512;4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525;4526;4527;4528;4529;4530;4531;4532;4533;4534;4535 2654;2655;2656;2657;2658;2659;2660;2661;2662;2663;2664;2665;2666;2667;2668;2669 2668 14 AAQGDITAPGGARR Unmodified 1339.6957 0.69565991 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.554 12.431 2 5.6674E-06 3271 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.89 61.211 166820000 0 0 0 0 0 0 18945000 23704000 20915000 0 0 0 19714000 16903000 18679000 0 0 0 16263000 15872000 15831000 0 0 0 230 38 224 4536;4537;4538;4539;4540;4541;4542;4543;4544 2670;2671;2672;2673;2674;2675;2676;2677;2678 2672 9 AAQIWWQQNQSK Unmodified 1486.7317 0.73171107 581 P0AA97 yaeQ Uncharacterized protein YaeQ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 29.588 28.43 2 1.237E-05 12786 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 128.27 125.54 87798000 6038000 6668300 4540600 0 0 0 0 0 0 0 0 0 13577000 13429000 12493000 0 0 0 0 14057000 16995000 0 0 0 231 581 225 4545;4546;4547;4548;4549;4550;4551;4552 2679 2679 1 AAQLHIQITAHSPASADAANIEQAFK Unmodified 2702.3776 0.37762682 524 P0A9I3 gcvR Glycine cleavage system transcriptional repressor yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 36.321 34.731 4 0.056982 17211 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 35.16 30.463 120000000 0 26418000 13292000 0 0 0 80294000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 232 524 226 4553;4554;4555 2680 2680 1 AAQSDPNCFFIDDENSR Unmodified 1984.8221 0.82211857 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.623 33.175 2 2.7471E-24 15845 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 213.18 213.18 147580000 6939000 6064000 6186200 0 0 0 11817000 15585000 14137000 0 0 0 7412300 9501500 7130700 0 0 0 21463000 20992000 20349000 0 0 0 233 51 227 4556;4557;4558;4559;4560;4561;4562;4563;4564;4565;4566;4567 2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691 2684 11 AAQSLVNQR Unmodified 985.53049 0.53049207 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 12.804 13.026 2 2.0078E-12 3102 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 182.13 173.18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 234 1476 228 4568;4569;4570 2692;2693;2694 2693 3 AAQVLHEK Unmodified 894.49232 0.49231565 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.271 11.098 2 0.010215 2433 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 78.77 55.879 363680000 29131000 0 23043000 0 0 0 8032100 30765000 17661000 0 0 0 54137000 39824000 47449000 0 0 0 41623000 42023000 29994000 0 0 0 235 528 229 4571;4572;4573;4574;4575;4576;4577;4578;4579;4580;4581 2695;2696;2697 2696 2 AAQVPVVVAVNK Unmodified 1193.7132 0.71320746 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 1 1 2 2 2 2 2 2 2 2 2 1 2 2 1 1 1 26.937 25.829 2;3 3.8691E-05 12014 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.87 104.95 1793400000 271080000 249330000 250580000 5620300 5597100 3517700 82301000 83068000 75265000 31542000 28068000 23762000 112090000 116670000 105820000 24324000 13554000 14951000 86780000 102120000 88038000 5940900 6568500 6856800 236 297 230 4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596;4597;4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612;4613;4614;4615;4616;4617;4618;4619;4620 2698;2699;2700;2701;2702;2703;2704;2705;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715;2716;2717 2703 20 AAQVPVVVAVNKIDKPEADPDR Unmodified 2330.2594 0.25940917 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 29.291 27.69 3 0.0026232 9260 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 58.914 58.383 22733000 0 0 0 974200 1042800 1322700 0 0 0 6006500 3282600 3098100 0 0 0 7006200 0 0 0 0 0 0 0 0 237 297 231 4621;4622;4623;4624;4625;4626;4627 2718;2719 2718 2 AAQYVASHPGEVCPAK Unmodified 1683.8039 0.80388973 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 4 2 2 2 3 2 3 2 2 2 2 4 2 2 2 2 4 3 4 2 2 2 13.58 14.229 2;3 1.1595E-30 4066 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 288.71 279.6 53395000000 5230200000 4761200000 4855200000 34838000 31254000 29593000 5288300000 4823200000 5050500000 23544000 20144000 19883000 2992400000 3398300000 3194400000 25085000 22281000 25419000 4316000000 4335000000 4883800000 9113200 13470000 11992000 238 827 232 4628;4629;4630;4631;4632;4633;4634;4635;4636;4637;4638;4639;4640;4641;4642;4643;4644;4645;4646;4647;4648;4649;4650;4651;4652;4653;4654;4655;4656;4657;4658;4659;4660;4661;4662;4663;4664;4665;4666;4667;4668;4669;4670;4671;4672;4673;4674;4675;4676;4677;4678;4679;4680;4681;4682;4683;4684;4685;4686;4687 2720;2721;2722;2723;2724;2725;2726;2727;2728;2729;2730;2731;2732;2733;2734;2735;2736;2737;2738;2739;2740;2741;2742;2743;2744;2745;2746;2747;2748;2749;2750;2751;2752;2753;2754;2755;2756 2756 37 AARPDIQISSDFIVGFPGETTEDFEK Unmodified 2868.3818 0.38176873 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.915 49.663 3 5.2933E-11 24397 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 130.78 128.62 605050000 37975000 32723000 34517000 12838000 12335000 10865000 32454000 37347000 25269000 15904000 11395000 11764000 43114000 41954000 33472000 0 4204700 0 56897000 60753000 63222000 10124000 8467000 7451400 239 862 233 4688;4689;4690;4691;4692;4693;4694;4695;4696;4697;4698;4699;4700;4701;4702;4703;4704;4705;4706;4707;4708;4709 2757;2758;2759;2760;2761;2762;2763;2764;2765;2766;2767;2768;2769;2770;2771;2772;2773;2774;2775 2761 19 AASAAGLSIHVPFAPGR Unmodified 1620.8736 0.87362428 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 37.434 35.649 2;3 1.954E-39 17757 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 250.48 244.51 4664000000 482290000 529120000 466600000 4948800 5326800 3769400 517860000 608870000 589540000 4310800 2385400 2629600 219550000 214200000 195620000 0 0 0 306940000 260730000 244860000 1363300 1810300 1284400 240 1086 234 4710;4711;4712;4713;4714;4715;4716;4717;4718;4719;4720;4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742;4743;4744;4745 2776;2777;2778;2779;2780;2781;2782;2783;2784;2785;2786;2787;2788;2789;2790;2791;2792;2793;2794;2795;2796;2797;2798;2799;2800 2779 24 AASDLIFLGVK Unmodified 1132.6492 0.64921022 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.522 44.082 2 0.00017029 21848 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.3 78.228 1074300000 203450000 186570000 172410000 0 0 0 61576000 63516000 66946000 0 0 0 38911000 40101000 36885000 0 0 0 67620000 67770000 68502000 0 0 0 241 1465 235 4746;4747;4748;4749;4750;4751;4752;4753;4754;4755;4756;4757 2801;2802;2803;2804;2805;2806;2807;2808;2809;2810;2811;2812 2802 8 AASEAVKDAALSCDQFFVNHR Unmodified 2335.1015 0.10152832 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 30.684 29.252 3;4 7.8764E-28 10892 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 184.83 180.47 473330000 0 0 0 22393000 21692000 25197000 0 0 0 59974000 53954000 58875000 0 0 0 51855000 34914000 36059000 0 0 0 33585000 35742000 39092000 242 373 236 4758;4759;4760;4761;4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774;4775;4776;4777;4778;4779;4780;4781 2813;2814;2815;2816;2817;2818;2819;2820;2821;2822;2823;2824;2825;2826;2827;2828;2829;2830;2831;2832;2833;2834;2835 2827 23 AASEEYNWDLNYGEIAK Unmodified 1971.885 0.88503641 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 42.277 40.513 2;3 4.4778E-32 18887 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 247.13 244.99 7375900000 383440000 375470000 341240000 1689800 1840500 1369300 726020000 673830000 637120000 1701000 0 1543800 639080000 603920000 604900000 0 0 0 804040000 786600000 792050000 0 0 0 243 24 237 4782;4783;4784;4785;4786;4787;4788;4789;4790;4791;4792;4793;4794;4795;4796;4797;4798;4799;4800;4801;4802;4803;4804;4805;4806;4807;4808;4809;4810 2836;2837;2838;2839;2840;2841;2842;2843;2844;2845;2846;2847;2848;2849;2850;2851;2852;2853;2854;2855;2856;2857;2858;2859;2860 2859 25 AASEFQK Unmodified 779.38137 0.38136821 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 10.835 11.589 2 0.0049222 2860 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 95.793 84.072 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 244 337 238 4811;4812;4813 2861;2862;2863 2861 3 AASFIMPSIIDR Unmodified 1319.6908 0.69075746 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.353 44.863 2 0.00051682 21891 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.263 78.008 96029000 8994500 8622300 7680900 0 0 0 7824600 8102800 8066300 0 0 0 7353800 5994100 5552700 0 0 0 8790800 10175000 8871700 0 0 0 245 843 239 4814;4815;4816;4817;4818;4819;4820;4821;4822;4823;4824;4825 2864;2865;2866;2867 2865 0 AASIEALK Unmodified 801.45962 0.45961853 928 P0AFD1 nuoE NADH-quinone oxidoreductase subunit E yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 2 2 2 1 2 2 2 1 1 1 1 1 1 16.983 17.46 1;2 0.029942 5276 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 73.616 29.221 525850000 5587500 10176000 53892000 0 0 0 125310000 111130000 9588300 16966000 14940000 14367000 26367000 19258000 12329000 0 0 0 37692000 34174000 34072000 0 0 0 246 928 240 4826;4827;4828;4829;4830;4831;4832;4833;4834;4835;4836;4837;4838;4839;4840;4841;4842;4843;4844;4845;4846 2868;2869;2870;2871 2868 0 AASLLEDILETR Unmodified 1329.714 0.71399532 687 P0ABZ1 fliG Flagellar motor switch protein FliG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 53.687 52.324 2 2.2979E-06 19160 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 142.83 130.25 37908000 7141900 8292200 10624000 3070500 4334300 4444900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 247 687 241 4847;4848;4849;4850;4851;4852 2872;2873 2872 2 AASLLHGLGFSNEQLER Unmodified 1840.9432 0.94316041 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 36.483 34.908 3 5.1799E-07 16654 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 78.441 75.294 78431000 0 10272000 7962200 0 0 0 7295000 5123900 6956700 0 0 0 4085400 3930600 6364100 0 0 0 9841700 8957500 7642200 0 0 0 248 1664 242 4853;4854;4855;4856;4857;4858;4859;4860;4861;4862;4863 2874;2875 2875 2 AASLLHGLGFSNEQLERPVSDFSGGWR Unmodified 2929.4471 0.44710337 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.718 44.262 4 6.0522E-31 20713 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 186.91 175.28 337350000 37262000 45573000 35790000 0 0 0 19478000 16978000 17221000 0 0 0 21891000 24065000 19004000 0 0 0 33037000 36922000 30129000 0 0 0 249 1664 243 4864;4865;4866;4867;4868;4869;4870;4871;4872;4873;4874;4875 2876;2877;2878;2879;2880;2881;2882;2883;2884 2883 9 AASMITESQCYQLEQNLHQQR Unmodified 2534.1642 0.16420493 736 P0ACM2 rspR HTH-type transcriptional repressor RspR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.954 28.598 3 4.2045E-43 13363 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 228.76 225.23 128550000 13839000 18403000 13006000 0 0 0 6029500 8380700 9173800 0 0 0 7251300 10716000 9738700 0 0 0 10693000 9931500 11386000 0 0 0 250 736 244 4876;4877;4878;4879;4880;4881;4882;4883;4884;4885;4886;4887 2885;2886;2887;2888;2889;2890;2891 2886 7 AASQSIIPVDTK Unmodified 1228.6663 0.66631685 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.916 23.927 2 2.8159E-06 10702 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 139.43 132.54 334250000 23429000 22149000 20781000 0 0 0 30132000 34711000 31975000 0 0 0 24313000 22247000 20921000 0 0 0 35508000 33002000 35078000 0 0 0 251 505 245 4888;4889;4890;4891;4892;4893;4894;4895;4896;4897;4898;4899 2892;2893;2894;2895;2896;2897;2898;2899;2900 2895 9 AASSQMLDR Unmodified 977.46003 0.46002924 1068 P11350 narI Respiratory nitrate reductase 1 gamma chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.974 13.666 2 9.6568E-06 3840 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 167.24 140.64 236170000 10221000 6153200 8654200 2297200 0 0 0 25984000 25170000 5147500 3551700 3874300 26675000 27178000 20806000 0 0 0 24708000 21677000 23270000 0 803040 0 252 1068 246 4900;4901;4902;4903;4904;4905;4906;4907;4908;4909;4910;4911;4912;4913;4914;4915;4916 2901;2902;2903;2904;2905;2906;2907;2908 2908 8 AASTENEK Unmodified 848.38758 0.3875758 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 4.1694 5.0321 2 0.0033979 793 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 92.47 78.484 16263000 0 0 0 0 0 0 0 0 0 0 0 0 2938200 2955800 0 0 0 0 2737300 3467800 4163600 0 0 0 253 1067 247 4917;4918;4919;4920;4921 2909;2910;2911 2911 3 AASTENEKDLYQR Unmodified 1523.7216 0.72159989 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 2 2 12.262 12.9 2;3 1.1323E-17 2935 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 220.94 197.22 863770000 10130000 8045800 6370500 8297700 7723600 8443000 41885000 44416000 40083000 31799000 21468000 28715000 32439000 29021000 28088000 8468600 7085200 6196600 60240000 52109000 50124000 121080000 116580000 94966000 254 1067 248 4922;4923;4924;4925;4926;4927;4928;4929;4930;4931;4932;4933;4934;4935;4936;4937;4938;4939;4940;4941;4942;4943;4944;4945;4946;4947;4948;4949;4950;4951;4952;4953;4954;4955;4956;4957;4958;4959;4960;4961;4962 2912;2913;2914;2915;2916;2917;2918;2919;2920;2921;2922;2923;2924;2925;2926;2927;2928 2923 17 AASYAPTLISHGDQVLPYVR Unmodified 2157.1219 0.12185306 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.818 38.144 3 2.0532E-11 18888 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.78 130.39 272490000 40037000 34058000 33328000 0 0 0 20746000 17540000 20376000 0 0 0 16245000 12610000 12614000 0 0 0 23693000 19375000 21870000 0 0 0 255 1728 249 4963;4964;4965;4966;4967;4968;4969;4970;4971;4972;4973;4974 2929;2930;2931;2932;2933;2934;2935;2936;2937;2938;2939 2931 11 AATAGNGNEAAIEAQAAGVEQR Unmodified 2098.0039 0.0039227641 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 2 2 2 2 2 2 1 1 1 1 2 2 1 1 1 25.605 24.362 2;3 2.2016E-107 11031 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 328.71 314.27 276680000 3130800 3724400 0 2112900 2375800 2283600 39496000 36004000 26389000 28028000 24225000 28093000 9500300 10754000 9133200 3250200 0 0 15401000 18662000 6112000 0 4661100 3338100 256 25 250 4975;4976;4977;4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988;4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001;5002 2940;2941;2942;2943;2944;2945;2946;2947;2948;2949;2950;2951;2952;2953;2954 2951 15 AATALQLEQVLR Unmodified 1311.751 0.75104953 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 2 2 2 2 3 2 2 4 4 1 2 2 4 3 3 39.792 38.334 2;3 1.2951E-39 15529 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 281.89 245.46 18835000000 55096000 46481000 45844000 2092000 0 1592300 75439000 56229000 57029000 1892200000 1599100000 1885600000 57185000 57565000 61506000 3514000000 2261600000 3004900000 91947000 90342000 80611000 1355800000 1359900000 1182500000 257 1616 251 5003;5004;5005;5006;5007;5008;5009;5010;5011;5012;5013;5014;5015;5016;5017;5018;5019;5020;5021;5022;5023;5024;5025;5026;5027;5028;5029;5030;5031;5032;5033;5034;5035;5036;5037;5038;5039;5040;5041;5042;5043;5044;5045;5046;5047;5048;5049 2955;2956;2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967;2968;2969;2970;2971;2972;2973;2974;2975;2976;2977;2978;2979;2980;2981;2982;2983;2984;2985;2986;2987;2988;2989;2990;2991;2992;2993;2994;2995;2996;2997 2967 37 AATDNGGSLIK Unmodified 1045.5404 0.54038805 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.844 15.407 2 2.9624E-06 4160 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 107.15 92.378 715640000 9159000 10337000 10687000 9408400 9922900 11312000 48627000 57120000 56736000 31818000 29679000 28982000 48498000 49555000 37847000 0 3267400 4589600 68166000 58223000 54583000 27530000 26715000 22873000 258 644 252 5050;5051;5052;5053;5054;5055;5056;5057;5058;5059;5060;5061;5062;5063;5064;5065;5066;5067;5068;5069;5070;5071;5072;5073 2998;2999;3000;3001;3002;3003;3004;3005;3006;3007;3008;3009 2998 6 AATEGTIPLIPGISTVSELMLGMDYGLK Unmodified 2876.4915 0.49151887 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 55.849 54.385 3 1.9487E-05 25849 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 67.778 61.985 122510000 0 10478000 0 0 0 0 9105300 0 10782000 0 0 0 19600000 17710000 22015000 0 0 0 16814000 0 16002000 0 0 0 259 490 253 5074;5075;5076;5077;5078;5079;5080;5081 3010;3011 3011 2 AATEHPR Unmodified 780.38785 0.38785057 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 4.2712 5.2493 2 0.0021148 711 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 118.01 115.64 8759800 0 0 0 6970300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1789500 0 0 0 0 0 260 1899 254 5082;5083;5084 3012;3013 3012 2 AATEPAHR Unmodified 851.42496 0.42496436 973 P0AFZ1 sseB Protein SseB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 4.5725 5.4709 2 0.00094389 960 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.54 98.164 42188000 0 0 0 0 0 0 5755800 5197100 4386600 0 0 0 6693300 0 4997300 0 0 0 8603500 6554400 0 0 0 0 261 973 255 5085;5086;5087;5088;5089;5090;5091;5092 3014;3015;3016;3017 3014 4 AATEPAHRPAFFR Unmodified 1469.7528 0.75278086 973 P0AFZ1 sseB Protein SseB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.845 15.504 4 5.9811E-06 5235 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.86 101.46 306050000 19785000 13421000 16144000 1160700 0 699780 31232000 28653000 21249000 1748100 0 2054100 29412000 27486000 19221000 0 0 946110 38365000 25622000 28847000 0 0 0 262 973 256 5093;5094;5095;5096;5097;5098;5099;5100;5101;5102;5103;5104;5105;5106;5107;5108;5109 3018;3019;3020;3021;3022;3023;3024;3025;3026;3027;3028 3023 11 AATFAASLGLK Unmodified 1048.5917 0.59169534 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.812 33.105 2 0.00013221 16249 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.71 106.42 665600000 45331000 49730000 42696000 1253000 1742900 1011900 71700000 69623000 64846000 3576400 3890000 3010700 50212000 43900000 40930000 0 0 0 60184000 57194000 48158000 2282000 1924000 2403300 263 319 257 5110;5111;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130 3029;3030;3031;3032;3033;3034;3035;3036;3037 3029 7 AATGVDALTHAIEGYITR Unmodified 1857.9585 0.95847612 552 P0A9S1 fucO Lactaldehyde reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.167 49.922 3 2.4526E-05 24257 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.493 83.697 213290000 32896000 27288000 25064000 0 893440 700840 19052000 23097000 14800000 0 0 0 14661000 13452000 14109000 0 0 0 12294000 8904200 6073400 0 0 0 264 552 258 5131;5132;5133;5134;5135;5136;5137;5138;5139;5140;5141;5142;5143;5144 3038;3039;3040;3041;3042;3043;3044 3042 7 AATHDVLAGLTAR Unmodified 1294.6993 0.69934831 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 4 4 2 2 2 2 2 2 24.626 23.748 2;3 6.5138E-06 7216 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 112.5 94.76 20496000000 263800000 277420000 204260000 8137900 8090300 10139000 283330000 269040000 219920000 40930000 35836000 35695000 209630000 159680000 135450000 6688200000 5460300000 5109000000 347290000 297280000 331710000 34189000 33420000 33093000 265 36 259 5145;5146;5147;5148;5149;5150;5151;5152;5153;5154;5155;5156;5157;5158;5159;5160;5161;5162;5163;5164;5165;5166;5167;5168;5169;5170;5171;5172;5173;5174;5175;5176;5177;5178;5179;5180;5181;5182;5183;5184;5185;5186;5187;5188;5189;5190;5191;5192;5193;5194;5195;5196;5197 3045;3046;3047;3048;3049;3050;3051;3052;3053;3054;3055;3056;3057;3058;3059;3060 3049 13 AATILAEQLEAFVDLR Unmodified 1758.9516 0.95159983 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 2 2 2 3 4 5 4 6 6 3 3 4 6 7 6 5 3 4 6 5 7 56.45 55.27 2;3 3.5825E-50 20850 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 347.25 333.83 111390000000 573810000 536730000 550770000 70847000 84795000 66717000 420410000 374950000 368450000 6290800000 6554800000 6835800000 635790000 559450000 507700000 17103000000 22662000000 21107000000 677520000 627810000 598200000 7988200000 8082200000 8107700000 266 383 260 5198;5199;5200;5201;5202;5203;5204;5205;5206;5207;5208;5209;5210;5211;5212;5213;5214;5215;5216;5217;5218;5219;5220;5221;5222;5223;5224;5225;5226;5227;5228;5229;5230;5231;5232;5233;5234;5235;5236;5237;5238;5239;5240;5241;5242;5243;5244;5245;5246;5247;5248;5249;5250;5251;5252;5253;5254;5255;5256;5257;5258;5259;5260;5261;5262;5263;5264;5265;5266;5267;5268;5269;5270;5271;5272;5273;5274;5275;5276;5277;5278;5279;5280;5281;5282;5283;5284;5285;5286;5287;5288;5289;5290;5291;5292;5293;5294;5295;5296;5297;5298;5299;5300;5301 3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075;3076;3077;3078;3079;3080;3081;3082;3083;3084;3085;3086;3087;3088;3089;3090;3091;3092;3093;3094;3095;3096;3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107;3108;3109;3110;3111;3112;3113;3114;3115;3116;3117;3118;3119;3120;3121;3122;3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135;3136;3137;3138;3139;3140;3141;3142;3143;3144;3145;3146;3147;3148;3149;3150;3151;3152;3153;3154;3155;3156;3157;3158;3159;3160;3161;3162;3163;3164;3165;3166;3167;3168;3169;3170;3171;3172;3173;3174;3175;3176;3177 3096 117 AATILAEQLEAFVDLRDVR Unmodified 2129.1481 0.14806781 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 54.081 53.657 3 7.1631E-30 21213 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 218.43 211.83 647280000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 164490000 172030000 192390000 0 0 0 43098000 38935000 36337000 267 383 261 5302;5303;5304;5305;5306;5307;5308;5309;5310 3178;3179;3180;3181;3182;3183;3184;3185 3184 8 AATLFNDAQR Unmodified 1105.5516 0.55162144 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.1 21.437 2 8.0822E-07 8359 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 171.73 162.87 3675300000 291410000 258870000 201300000 818730 1081900 0 325360000 353910000 340650000 0 0 0 295540000 260740000 268270000 0 0 0 380070000 350500000 346770000 0 0 0 268 1294 262 5311;5312;5313;5314;5315;5316;5317;5318;5319;5320;5321;5322;5323;5324 3186;3187;3188;3189;3190;3191;3192;3193;3194;3195;3196;3197 3194 12 AATYEQIK Unmodified 922.476 0.47599688 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 13.304 13.946 2 0.00082641 4158 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 121.52 86.268 33062000000 1825300000 1516600000 1499900000 12679000 11393000 13109000 4109000000 4087800000 3890600000 9429300 8248200 5958500 2662300000 2805400000 2488700000 5766900 5604000 7097900 2837500000 2641800000 2603600000 4837400 5207200 4530100 269 504 263 5325;5326;5327;5328;5329;5330;5331;5332;5333;5334;5335;5336;5337;5338;5339;5340;5341;5342;5343;5344;5345;5346;5347;5348;5349;5350;5351 3198;3199;3200;3201;3202;3203;3204;3205;3206;3207;3208;3209;3210;3211 3199 13 AAVADCLAATDKR Unmodified 1360.6769 0.67689831 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 14.73 15.473 2;3 5.8955E-10 5197 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.42 161.2 529720000 24719000 29303000 26924000 0 0 0 35188000 51767000 42927000 0 0 0 44839000 42013000 37538000 0 0 0 70887000 60987000 61224000 0 1400700 0 270 1307 264 5352;5353;5354;5355;5356;5357;5358;5359;5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370;5371;5372;5373;5374;5375;5376 3212;3213;3214;3215;3216;3217;3218;3219;3220;3221;3222;3223;3224;3225;3226 3216 15 AAVAFAPGK Unmodified 830.46504 0.46503826 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 17.566 18.268 2 0.082871 6621 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 44.395 21.659 23347000 0 0 2609700 0 0 0 0 3300900 3000200 0 0 0 2640800 2785400 0 0 0 0 3158000 2975400 2876300 0 0 0 271 1253 265 5377;5378;5379;5380;5381;5382;5383;5384 3227;3228 3228 1 AAVAFAPGKPLEIVEIDVAPPK Unmodified 2231.2566 0.25655562 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.244 46.9 2;3 4.5621E-15 22015 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 137.09 135.88 1878100000 168440000 163870000 159960000 0 0 0 178640000 178850000 180880000 0 0 0 136130000 109640000 130520000 0 0 0 170430000 153380000 147380000 0 0 0 272 1253 266 5385;5386;5387;5388;5389;5390;5391;5392;5393;5394;5395;5396;5397;5398;5399;5400;5401;5402;5403;5404;5405;5406;5407;5408 3229;3230;3231;3232;3233;3234;3235;3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246 3244 18 AAVAFLGTAIDAGHTNVLALQSSAAGSATNVGVQILDR Unmodified 3678.9329 0.93293666 87 P04128 fimA Type-1 fimbrial protein, A chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 53.906 52.457 3;4 3.3738E-30 21079 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 178.8 173.48 404340000 0 0 0 0 0 0 0 0 0 121520000 129410000 137020000 0 0 0 0 0 0 0 3739300 0 6390400 0 6257300 273 87 267 5409;5410;5411;5412;5413;5414;5415;5416;5417 3247;3248;3249;3250;3251;3252 3252 6 AAVAGIAMGLVK Unmodified 1099.6424 0.6423507 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 37.647 35.956 1;2 7.2908E-05 14017 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 101.64 95.902 3692500000 5885400 203020000 173080000 34946000 35194000 34000000 345910000 353300000 353980000 23734000 16038000 18318000 265720000 256540000 252260000 0 5848500 4696900 427930000 416590000 419320000 15954000 15557000 14716000 274 107 268 5418;5419;5420;5421;5422;5423;5424;5425;5426;5427;5428;5429;5430;5431;5432;5433;5434;5435;5436;5437;5438;5439;5440;5441;5442;5443;5444;5445;5446;5447;5448;5449;5450;5451;5452;5453;5454 3253;3254;3255;3256;3257;3258;3259;3260;3261;3262;3263;3264;3265;3266;3267;3268;3269;3270;3271;3272 3260 18 AAVAWYGK Unmodified 864.44939 0.4493882 1614 P56262 ysgA Putative carboxymethylenebutenolidase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.654 21.731 2 0.0057635 8908 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.086 75.27 258760000 67654000 49873000 48012000 0 0 451230 19066000 0 20988000 0 0 0 6329300 5762500 5876800 0 0 0 11392000 11279000 12076000 0 0 0 275 1614 269 5455;5456;5457;5458;5459;5460;5461;5462;5463;5464;5465;5466 3273;3274;3275;3276;3277;3278;3279;3280;3281 3276 9 AAVEAETLK Unmodified 930.50221 0.50221163 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 13.915 14.784 1;2 0.0032424 4755 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.279 58.307 643630000 94040000 10724000 98625000 0 0 0 73209000 81643000 70097000 0 0 0 35236000 30964000 34136000 0 0 0 39718000 35592000 39648000 0 0 0 276 1830 270 5467;5468;5469;5470;5471;5472;5473;5474;5475;5476;5477;5478;5479;5480;5481;5482;5483;5484;5485;5486;5487;5488;5489 3282;3283;3284 3283 2 AAVEAFK Unmodified 734.39629 0.39629 919 P0AF90 rraB Regulator of ribonuclease activity B yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.398 15.108 2 0.013597 4946 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 83.614 32.648 2001000000 171650000 155900000 164810000 718350 725930 596520 238470000 241800000 233270000 1483900 0 0 95649000 89593000 92236000 0 0 504190 164390000 172430000 176790000 0 0 0 277 919 271 5490;5491;5492;5493;5494;5495;5496;5497;5498;5499;5500;5501;5502;5503;5504;5505;5506 3285;3286;3287;3288;3289;3290;3291 3286 6 AAVEEGVVAGGGVALIR Unmodified 1566.873 0.87295558 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 9 9 2 2 2 11 10 11 2 2 2 6 10 9 1 2 2 11 8 7 2 2 2 41.675 40.074 2;3 5.4475E-19 17588 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 194.17 182.93 4288000000 487870000 432140000 403720000 30595000 30728000 32018000 345630000 289960000 280990000 27394000 22862000 24308000 238860000 236230000 221580000 6079100 5629300 5119900 372880000 372230000 332030000 29980000 30937000 28202000 278 240 272 5507;5508;5509;5510;5511;5512;5513;5514;5515;5516;5517;5518;5519;5520;5521;5522;5523;5524;5525;5526;5527;5528;5529;5530;5531;5532;5533;5534;5535;5536;5537;5538;5539;5540;5541;5542;5543;5544;5545;5546;5547;5548;5549;5550;5551;5552;5553;5554;5555;5556;5557;5558;5559;5560;5561;5562;5563;5564;5565;5566;5567;5568;5569;5570;5571;5572;5573;5574;5575;5576;5577;5578;5579;5580;5581;5582;5583;5584;5585;5586;5587;5588;5589;5590;5591;5592;5593;5594;5595;5596;5597;5598;5599;5600;5601;5602;5603;5604;5605;5606;5607;5608;5609;5610;5611;5612;5613;5614;5615;5616;5617;5618;5619;5620;5621;5622;5623;5624;5625;5626;5627;5628;5629;5630;5631;5632;5633;5634;5635;5636;5637;5638 3292;3293;3294;3295;3296;3297;3298;3299;3300;3301;3302;3303;3304;3305;3306;3307;3308;3309;3310;3311;3312;3313;3314;3315;3316;3317;3318;3319;3320;3321;3322;3323;3324;3325;3326;3327;3328;3329;3330;3331;3332;3333;3334;3335;3336;3337;3338;3339;3340;3341;3342;3343;3344;3345;3346;3347;3348;3349;3350;3351;3352;3353;3354;3355;3356;3357;3358;3359;3360;3361;3362;3363;3364;3365;3366;3367;3368;3369;3370;3371;3372;3373;3374;3375;3376;3377;3378;3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391;3392;3393;3394;3395;3396;3397;3398;3399;3400;3401;3402;3403;3404;3405;3406;3407;3408;3409;3410;3411;3412;3413;3414;3415;3416;3417;3418 3369 106 AAVELAK Unmodified 700.41194 0.41194006 329;745 P0A7B8;P0ACS7 hslV;rpiR ATP-dependent protease subunit HslV;HTH-type transcriptional regulator RpiR no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 3 1 1 2 2 2 2 1 1 2 2 2 1 1 1 1 2 2 1 1 1 12.513 13.197 2 0.011149 4140 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.086 35.05 3503200000 278310000 281310000 286700000 3765600 4747700 10926000 273150000 317130000 290490000 2754900 2453700 5537800 311820000 186110000 25339000 1007700 960190 1052600 469300000 466830000 264350000 11309000 0 7854200 279 329;745 273 5639;5640;5641;5642;5643;5644;5645;5646;5647;5648;5649;5650;5651;5652;5653;5654;5655;5656;5657;5658;5659;5660;5661;5662;5663;5664;5665;5666;5667;5668;5669;5670;5671;5672;5673;5674 3419;3420;3421;3422;3423;3424 3420 6 AAVELAVK Unmodified 799.48035 0.48035398 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.957 19.308 2 0.010005 5435 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 79.116 45.474 558130000 52271000 60886000 52568000 0 4573600 5315200 10378000 11167000 10544000 15359000 11680000 12933000 52446000 0 42102000 1072900 0 0 73033000 64402000 64941000 4371700 3428500 4660100 280 658 274 5675;5676;5677;5678;5679;5680;5681;5682;5683;5684;5685;5686;5687;5688;5689;5690;5691;5692;5693;5694 3425;3426;3427;3428 3427 2 AAVELIQPGHR Unmodified 1189.6568 0.65675521 735 P0ACK2 agaR Putative aga operon transcriptional repressor yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 18.119 18.679 2;3 0.00013675 7252 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.636 82.632 253610000 20962000 26994000 23068000 0 0 845010 19429000 22821000 26700000 433660 0 0 13772000 16280000 12625000 0 0 0 23252000 27203000 19221000 0 0 0 281 735 275 5695;5696;5697;5698;5699;5700;5701;5702;5703;5704;5705;5706;5707;5708;5709;5710;5711;5712;5713;5714;5715;5716;5717;5718;5719;5720 3429;3430;3431;3432;3433;3434;3435;3436 3429 6 AAVEQATINLQYANVTSPITGVSGK Unmodified 2531.3231 0.32313164 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.756 43.783 3 2.71E-07 17441 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 107.83 104.91 51848000 0 3616300 0 0 0 0 7725400 6766600 7680900 9128700 9191400 7738500 0 0 0 0 0 0 0 0 0 0 0 0 282 1477 276 5721;5722;5723;5724;5725;5726;5727 3437;3438;3439 3439 3 AAVETAR Unmodified 716.3817 0.38170256 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9.6499 10.087 2 0.0018344 2017 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 122.98 45.605 395960000 0 0 0 0 0 0 0 0 0 11201000 9345000 9254300 10709000 9423700 1749200 2891800 3864300 3432300 22758000 23545000 25573000 88764000 85901000 87543000 283 826 277 5728;5729;5730;5731;5732;5733;5734;5735;5736;5737;5738;5739;5740;5741;5742 3440;3441;3442;3443;3444 3444 5 AAVFAVK Unmodified 704.42211 0.42211082 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.612 19.203 2 0.016802 5371 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 80.377 44.759 116450000 0 0 12169000 2573300 3189200 0 12396000 13337000 12453000 0 0 0 8242200 6124200 6357200 0 0 0 12819000 14155000 12634000 0 0 0 284 1083 278 5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754 3445;3446 3445 2 AAVFHEGMSIIER Oxidation (M) 1474.7238 0.7238485 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 6 1 5 4 7 7 7 4 24.636 23.753 2;3 6.6184E-05 7819 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 93.442 86.909 384740000 0 0 0 0 0 0 0 0 0 45626000 50486000 49049000 0 859940 0 32950000 24175000 28743000 0 0 0 63473000 55592000 33784000 285 1616 279 5755;5756;5757;5758;5759;5760;5761;5762;5763;5764;5765;5766;5767;5768;5769;5770;5771;5772;5773;5774;5775;5776;5777;5778;5779;5780;5781;5782;5783;5784;5785;5786;5787;5788;5789;5790;5791;5792;5793;5794;5795;5796;5797;5798;5799;5800;5801;5802;5803;5804;5805;5806;5807 3447;3448;3449;3450;3451;3452;3453;3454;3455;3456;3457;3458;3459;3460;3461;3462;3463;3464;3465;3466;3467;3468;3469;3470 3453 560 23 AAVFHEGMSIIER Unmodified 1458.7289 0.72893388 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 7 7 6 1 1 1 6 7 7 1 1 1 6 7 5 31.41 30.041 2;3 2.7591E-12 10573 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 223.14 203.15 11064000000 26616000 25874000 21723000 1145100 0 0 40060000 36407000 37463000 1349200000 1354700000 1249600000 29210000 22675000 26519000 1533500000 1149600000 1133700000 33390000 36890000 34167000 962380000 897450000 1061500000 286 1616 279 5808;5809;5810;5811;5812;5813;5814;5815;5816;5817;5818;5819;5820;5821;5822;5823;5824;5825;5826;5827;5828;5829;5830;5831;5832;5833;5834;5835;5836;5837;5838;5839;5840;5841;5842;5843;5844;5845;5846;5847;5848;5849;5850;5851;5852;5853;5854;5855;5856;5857;5858;5859;5860;5861;5862;5863;5864;5865;5866;5867;5868;5869;5870;5871;5872;5873;5874;5875;5876;5877;5878;5879;5880;5881 3471;3472;3473;3474;3475;3476;3477;3478;3479;3480;3481;3482;3483;3484;3485;3486;3487;3488;3489;3490;3491;3492;3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504;3505;3506;3507;3508;3509;3510;3511;3512;3513;3514;3515;3516;3517;3518;3519;3520;3521;3522;3523;3524;3525;3526;3527;3528;3529;3530;3531;3532;3533;3534;3535;3536;3537;3538;3539;3540;3541;3542;3543 3515 70 AAVFHEGMSIIERDR Unmodified 1729.857 0.85698794 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 2 3 3 3 26.409 25.247 2;3;4 8.4628E-12 7705 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 166.86 151.59 860990000 0 0 0 0 0 0 0 0 0 73525000 56567000 51443000 0 0 0 141130000 137800000 141950000 0 0 0 76514000 87088000 94975000 287 1616 280 5882;5883;5884;5885;5886;5887;5888;5889;5890;5891;5892;5893;5894;5895;5896;5897;5898;5899;5900;5901;5902;5903;5904;5905 3544;3545;3546;3547;3548;3549;3550;3551;3552;3553;3554;3555;3556;3557;3558;3559;3560;3561;3562 3548 19 AAVGDALKPFEER Unmodified 1401.7252 0.72522871 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 28.769 27.419 2 0.14454 12649 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 47.844 44.312 42312000 0 0 0 0 0 0 7631200 5114000 6483700 0 0 0 3731500 3640900 2825600 0 0 0 6577800 6307400 0 0 0 0 288 193 281 5906;5907;5908;5909;5910;5911;5912;5913 3563 3563 0 AAVLCFAAESVATDCQR Unmodified 1867.8557 0.85566731 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 3 3 3 2 2 2 3 3 2 2 1 1 3 3 4 2 2 2 39.299 37.603 2;3 8.2388E-40 14683 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 262.54 260.22 2231600000 96899000 79243000 74847000 18635000 18033000 17906000 296650000 278510000 266900000 42687000 31619000 35803000 160790000 144750000 131350000 7182600 4280700 4049000 163870000 163280000 154270000 14469000 11401000 14223000 289 1046 282 5914;5915;5916;5917;5918;5919;5920;5921;5922;5923;5924;5925;5926;5927;5928;5929;5930;5931;5932;5933;5934;5935;5936;5937;5938;5939;5940;5941;5942;5943;5944;5945;5946;5947;5948;5949;5950;5951;5952;5953;5954;5955;5956;5957;5958;5959;5960;5961;5962;5963;5964;5965;5966;5967;5968;5969 3564;3565;3566;3567;3568;3569;3570;3571;3572;3573;3574;3575;3576;3577;3578;3579;3580;3581;3582;3583;3584;3585;3586;3587;3588;3589;3590;3591;3592;3593;3594;3595;3596;3597;3598;3599;3600;3601;3602;3603;3604;3605;3606;3607;3608;3609;3610;3611;3612;3613;3614;3615;3616;3617;3618;3619;3620;3621;3622;3623;3624;3625;3626;3627;3628;3629 3569 65 AAVLLADSFK Unmodified 1033.5808 0.5807963 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 34.432 32.88 1;2 1.3497E-05 14968 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 152.47 129.04 4865000000 487070000 462580000 427020000 3630400 3499300 3885700 438870000 464680000 451830000 4909000 5540600 4326400 330490000 327110000 304150000 0 1690300 0 395090000 349090000 388840000 3831300 3414000 3472800 290 1658 283 5970;5971;5972;5973;5974;5975;5976;5977;5978;5979;5980;5981;5982;5983;5984;5985;5986;5987;5988;5989;5990;5991;5992;5993;5994;5995;5996;5997;5998;5999;6000;6001;6002;6003 3630;3631;3632;3633;3634;3635;3636;3637;3638;3639;3640;3641;3642;3643;3644;3645;3646;3647;3648;3649;3650 3648 19 AAVLMESQMQQLIGILVR Unmodified 1999.0958 0.095838001 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 3 2 2 2 55.772 54.447 2;3 1.0083E-36 21880 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 295.32 265.78 661440000 0 9491900 12196000 15146000 20160000 20310000 16642000 19466000 22739000 36196000 30801000 30234000 31275000 24205000 24968000 10667000 14210000 12380000 44150000 51305000 93463000 19582000 50754000 51102000 291 215 284 6004;6005;6006;6007;6008;6009;6010;6011;6012;6013;6014;6015;6016;6017;6018;6019;6020;6021;6022;6023;6024;6025;6026;6027;6028;6029;6030;6031;6032;6033;6034;6035;6036;6037;6038;6039;6040;6041;6042;6043;6044;6045 3651;3652;3653;3654;3655;3656;3657;3658;3659;3660;3661;3662;3663;3664;3665;3666;3667;3668 3661 18 AAVLPANLIQAQR Unmodified 1363.7936 0.79358305 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 1 1 1 35.835 34.353 2;3 8.8362E-18 16780 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 173.71 167.99 21756000000 1251400000 1408100000 1133600000 5541400 6576900 5552000 2191600000 2100100000 2045800000 5817800 4125400 3153800 1793400000 1702400000 1628900000 3898000 3532300 2696800 2203100000 2204700000 2040100000 3851100 4094100 3984000 292 24 285 6046;6047;6048;6049;6050;6051;6052;6053;6054;6055;6056;6057;6058;6059;6060;6061;6062;6063;6064;6065;6066;6067;6068;6069;6070;6071;6072;6073;6074;6075;6076;6077;6078;6079;6080;6081;6082;6083;6084;6085;6086 3669;3670;3671;3672;3673;3674;3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687;3688;3689 3673 21 AAVLVEVNR Unmodified 969.56073 0.56072956 856 P0AEG1 dppC Dipeptide transport system permease protein DppC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 21.446 21.732 2 0.00019373 6453 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 127.12 102.49 37152000 7320100 8789200 6937300 4113100 4479400 5512900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 293 856 286 6087;6088;6089;6090;6091;6092 3690;3691;3692 3691 3 AAVLVEVNRDYVTASR Unmodified 1761.9373 0.93734675 856 P0AEG1 dppC Dipeptide transport system permease protein DppC yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 28.348 26.929 3 0.084036 9063 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 31.914 25.616 6111200 0 0 0 1922700 2581600 1607000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 294 856 287 6093;6094;6095 3693 3693 1 AAVLVKK Unmodified 727.49561 0.49561011 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 10.903 11.314 2 0.036556 2217 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 67.889 48.934 70217000 0 0 0 7017300 6025900 6808600 0 0 0 0 0 9176600 0 0 0 10654000 5867200 5325800 0 0 0 5172500 5537400 8632200 295 1636 288 6096;6097;6098;6099;6100;6101;6102;6103;6104;6105 3694;3695;3696;3697;3698;3699 3696 6 AAVPAVQTEHCFLTHGDMPTLTIDIFR Unmodified 3039.4946 0.49464719 1954 Q46810 mocA Molybdenum cofactor cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 49.999 48.543 4 0.00062965 24097 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 61.109 58.795 147260000 13969000 13800000 16184000 0 0 0 26882000 24177000 27785000 0 3777100 0 0 0 10653000 0 0 0 0 10031000 0 0 0 0 296 1954 289 6106;6107;6108;6109;6110;6111;6112;6113;6114 3700 3700 1 AAVTMPSSK Unmodified 890.45315 0.45315295 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.642 14.195 2 0.00022968 3222 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 123.98 100.01 2728100000 491860000 431830000 458060000 15070000 12743000 12905000 198550000 182180000 166150000 36251000 31313000 33632000 0 2598900 0 21309000 15436000 17447000 288330000 248010000 1570500 21964000 19740000 21179000 297 377 290 6115;6116;6117;6118;6119;6120;6121;6122;6123;6124;6125;6126;6127;6128;6129;6130;6131;6132;6133;6134;6135;6136 3701;3702;3703;3704;3705;3706;3707;3708;3709;3710;3711;3712;3713;3714 3710 14 AAVTMPSSK Oxidation (M) 906.44807 0.44806757 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 10.412 11.174 2 0.0011174 2565 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.933 81.372 104910000 0 26562000 0 0 0 0 18007000 13240000 15165000 0 0 0 0 0 0 0 0 0 31940000 0 0 0 0 0 298 377 290 6137;6138;6139;6140;6141;6142 3715;3716 3715 161 2 AAVVHSGGMDEVSLHAPTIVAELHDGEIK Unmodified 2981.4917 0.4916703 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 36.966 35.421 4 8.2912E-23 17052 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.43 154.55 80159000 24359000 26916000 23214000 2920200 0 2750000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 299 48 291 6143;6144;6145;6146;6147 3717;3718 3718 2 AAVVVPDNVLFEGGK Unmodified 1513.814 0.81404372 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.906 41.243 2 3.52E-05 19408 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 88.187 81.946 410520000 27883000 19325000 19537000 0 1441800 0 33170000 33849000 27005000 0 0 1394000 35032000 26944000 38856000 0 0 0 45685000 54658000 45734000 0 0 0 300 194 292 6148;6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161 3719;3720;3721;3722;3723;3724;3725 3723 7 AAYAVVDDGK Unmodified 1007.4924 0.49237523 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 15.577 16.386 2 0.0002121 5846 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.15 109.46 283990000 49765000 49614000 38055000 0 152480 0 21096000 20889000 20478000 0 0 0 13464000 9604500 10084000 0 0 0 21856000 14956000 13979000 0 0 0 301 1872 293 6162;6163;6164;6165;6166;6167;6168;6169;6170;6171;6172;6173;6174;6175;6176;6177 3726;3727;3728;3729;3730 3726 5 AAYAVVDDGKR Unmodified 1163.5935 0.59348625 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 12.42 13.294 2;3 3.6404E-10 3883 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 208.37 192.49 1762900000 223880000 232590000 194600000 2281300 1478000 1891600 160920000 135050000 138710000 0 0 0 97192000 84561000 85649000 0 0 0 140670000 129550000 133890000 0 0 0 302 1872 294 6178;6179;6180;6181;6182;6183;6184;6185;6186;6187;6188;6189;6190;6191;6192;6193;6194;6195;6196;6197;6198;6199;6200;6201;6202;6203;6204;6205;6206 3731;3732;3733;3734;3735;3736;3737;3738;3739 3731 9 AAYDLTR Unmodified 808.40792 0.40791731 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.996 16.761 2 0.0010429 5822 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.07 95.074 13010000000 128580000 129270000 130140000 0 0 0 1138300000 1212500000 1252400000 0 0 0 1189300000 949140000 956390000 0 0 0 2196800000 1785000000 1940900000 1766700 0 0 303 993 295 6207;6208;6209;6210;6211;6212;6213;6214;6215;6216;6217;6218;6219 3740;3741;3742;3743;3744;3745;3746;3747 3745 8 AAYDNELVEAVKR Unmodified 1476.7573 0.75725712 1199 P22525 ycbB Probable L,D-transpeptidase YcbB yes yes 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 27.099 25.325 3 0.15244 9181 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 18.833 13.849 9135200 0 0 0 0 0 0 0 0 0 2665400 2933100 3143200 0 0 0 0 0 0 0 0 0 393630 0 0 304 1199 296 6220;6221;6222;6223 3748;3749 3749 0 AAYFVANGAR Unmodified 1038.5247 0.52467841 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.477 19.964 2 9.6921E-05 5768 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 130.77 113.84 101440000 6466100 6993200 3902000 14666000 13809000 15615000 3157200 3340000 3165100 0 0 0 5230200 3122400 4573300 0 0 0 5581500 6311300 5512900 0 0 0 305 906 297 6224;6225;6226;6227;6228;6229;6230;6231;6232;6233;6234;6235;6236;6237;6238 3750;3751;3752 3750 3 AAYSSGKPAIGVGAGNTPVVIDETADIK Unmodified 2700.397 0.39702486 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.074 34.296 3 6.3851E-08 16866 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.17 103.45 1556500000 156860000 154000000 127280000 9420100 6928400 8110900 196370000 219680000 189010000 9212900 10511000 7490500 83751000 72252000 68853000 0 0 0 66736000 70582000 69273000 8946800 9694300 11521000 306 548 298 6239;6240;6241;6242;6243;6244;6245;6246;6247;6248;6249;6250;6251;6252;6253;6254;6255;6256;6257;6258;6259 3753;3754;3755;3756;3757;3758;3759;3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773 3756 21 AAYSSGKPAIGVGAGNTPVVIDETADIKR Unmodified 2856.4981 0.49813589 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 1 1 1 3 3 2 3 3 3 31.214 29.687 3;4;5 4.7702E-42 14085 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 174.53 168.83 6871500000 589540000 440000000 412290000 232550000 231230000 156320000 636090000 637210000 655320000 237120000 223460000 211190000 205270000 234930000 204880000 2344900 1025800 832560 262570000 244740000 258680000 276200000 270600000 247100000 307 548 299 6260;6261;6262;6263;6264;6265;6266;6267;6268;6269;6270;6271;6272;6273;6274;6275;6276;6277;6278;6279;6280;6281;6282;6283;6284;6285;6286;6287;6288;6289;6290;6291;6292;6293;6294;6295;6296;6297;6298;6299;6300;6301;6302;6303;6304;6305;6306;6307;6308;6309;6310;6311;6312;6313;6314;6315;6316;6317;6318;6319;6320;6321;6322;6323;6324 3774;3775;3776;3777;3778;3779;3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809;3810;3811;3812;3813;3814;3815;3816 3785 43 ACADEWTAR Unmodified 1078.4502 0.45019283 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.486 17.124 2 0.00048604 5686 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 109.01 106.41 83686000 0 0 0 2459200 2018300 2079100 8312600 8970200 8709100 1555500 0 2255900 6243100 6292000 5247500 1014600 1007900 0 10067000 8355400 9098700 0 0 0 308 1083 300 6325;6326;6327;6328;6329;6330;6331;6332;6333;6334;6335;6336;6337;6338;6339;6340 3817;3818;3819;3820;3821;3822;3823;3824 3824 8 ACAEAGVFLISPFVGR Unmodified 1692.8658 0.86576171 402;401 P0A870;P0A867 talB;talA Transaldolase B;Transaldolase A no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 1 1 2 2 1 53.624 52.241 2;3 1.7083E-30 25571 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 226.33 222.8 3914900000 421490000 388470000 379300000 3367100 4197400 3785400 410580000 407780000 395070000 0 2101800 2843100 283730000 304700000 53799000 1257400 0 0 396330000 385540000 70544000 0 0 0 309 402;401 301 6341;6342;6343;6344;6345;6346;6347;6348;6349;6350;6351;6352;6353;6354;6355;6356;6357;6358;6359;6360;6361;6362;6363;6364;6365;6366;6367;6368 3825;3826;3827;3828;3829;3830;3831;3832;3833;3834;3835;3836;3837;3838;3839;3840;3841;3842;3843;3844;3845;3846;3847;3848 3832 24 ACAEDDPQLSGR Unmodified 1317.5619 0.56192813 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.375 14.241 2 4.3132E-07 4422 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 155.06 155.06 188890000 22289000 24689000 26500000 0 0 0 16096000 15005000 15662000 0 0 0 11367000 10377000 9140400 0 0 0 12627000 13073000 12064000 0 0 0 310 88 302 6369;6370;6371;6372;6373;6374;6375;6376;6377;6378;6379;6380 3849;3850;3851;3852;3853;3854;3855;3856;3857;3858;3859;3860 3850 12 ACALITDGR Unmodified 975.48076 0.48076468 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 17.486 18.189 2 0.091994 6760 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 50.607 47.238 112260000 16511000 18391000 13779000 0 0 0 11892000 0 8263700 0 0 0 5710500 6860900 6638100 0 0 0 8061200 8506200 7645700 0 0 0 311 118 303 6381;6382;6383;6384;6385;6386;6387;6388;6389;6390;6391 3861;3862 3861 0 ACAQLVKPGGDVFFSTLNR Unmodified 2079.0571 0.057144309 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.832 37.216 3 2.13E-18 18030 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 149.52 146.42 772540000 78496000 78261000 73693000 14028000 13905000 14178000 65128000 62747000 65996000 9976100 13729000 12550000 39552000 36928000 38390000 3994900 2550900 2464400 62491000 0 59046000 6227000 8865200 9345400 312 1146 304 6392;6393;6394;6395;6396;6397;6398;6399;6400;6401;6402;6403;6404;6405;6406;6407;6408;6409;6410;6411;6412;6413;6414;6415 3863;3864;3865;3866;3867;3868;3869;3870;3871;3872;3873;3874;3875;3876;3877;3878;3879;3880;3881;3882;3883 3875 21 ACEEAAEGQVVSPVNFNSPGQVVIAGHK Unmodified 2893.4029 0.4028553 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 3 3 3 3 3 3 37.579 35.902 2;3;4 3.0255E-53 17414 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 322.17 320.86 7199500000 596160000 489160000 500520000 2007500 1665700 1714700 475840000 490060000 477810000 0 0 0 719240000 643320000 696060000 0 0 0 650500000 744360000 711050000 0 0 0 313 597 305 6416;6417;6418;6419;6420;6421;6422;6423;6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436;6437;6438;6439;6440;6441;6442;6443;6444;6445;6446;6447;6448;6449;6450;6451;6452;6453;6454 3884;3885;3886;3887;3888;3889;3890;3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902;3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913;3914;3915 3896 32 ACEEAGISAEAIDPQQAR Unmodified 1914.8742 0.87415414 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 1 2 2 28.247 26.904 2;3 6.5452E-18 12527 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 231.52 226.24 290610000 0 0 0 0 0 0 68452000 37483000 40072000 0 0 3454800 31558000 27032000 29356000 0 0 0 14114000 19489000 19599000 0 0 0 314 506 306 6455;6456;6457;6458;6459;6460;6461;6462;6463;6464;6465;6466;6467;6468;6469;6470;6471;6472;6473 3916;3917;3918;3919;3920;3921;3922;3923;3924;3925;3926;3927;3928 3920 13 ACEEVGFVSR Unmodified 1152.5234 0.52335778 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 21.1 21.444 2 3.2067E-05 8537 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 144.09 134.87 542840000 67813000 61484000 57357000 0 0 441210 33951000 29739000 38508000 0 0 0 42062000 40180000 44759000 0 0 0 46782000 41063000 38698000 0 0 0 315 1237 307 6474;6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486 3929;3930;3931;3932;3933;3934;3935;3936 3931 8 ACFHQFDPVK Unmodified 1247.5757 0.5757277 108 P05100 tag DNA-3-methyladenine glycosylase 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 19.641 19.571 3 0.059487 5709 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 37.696 37.613 8389200 0 0 0 0 0 0 0 0 0 0 547830 0 0 0 0 2526400 2450900 2864100 0 0 0 0 0 0 316 108 308 6487;6488;6489;6490 3937;3938 3938 2 ACFKPVEELL Unmodified 1204.6162 0.61619553 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.439 39.723 2 0.036732 15838 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 70.919 70.919 163760000 0 0 0 37876000 30799000 37855000 0 0 0 13884000 11366000 8768300 0 0 0 2749300 0 2685100 2638400 0 0 4846300 5194600 5095100 317 1807 309 6491;6492;6493;6494;6495;6496;6497;6498;6499;6500;6501;6502 3939;3940 3939 2 ACGALTAAFTK Unmodified 1109.5539 0.55392962 689 P0AC00 frlB Fructoselysine 6-phosphate deglycase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 25.695 24.762 2 0.016793 10768 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 61.593 55.363 23286000 2950600 0 3560800 0 0 0 0 0 0 0 0 0 7016100 9758300 0 0 0 0 0 0 0 0 0 0 318 689 310 6503;6504;6505;6506;6507;6508 3941;3942;3943 3941 2 ACGAVDYFCQHGHGLISK Unmodified 2018.9091 0.90909986 1875 P76575 yfgJ Uncharacterized protein YfgJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 26.693 25.462 3;4 3.8479E-10 11532 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.59 126.63 1188100000 83497000 72716000 72051000 2624500 3312700 4233300 114870000 104740000 99847000 9913000 7164000 9468400 95076000 97537000 81971000 0 1946100 0 103570000 101400000 102260000 6019100 6883900 6958100 319 1875 311 6509;6510;6511;6512;6513;6514;6515;6516;6517;6518;6519;6520;6521;6522;6523;6524;6525;6526;6527;6528;6529;6530;6531;6532;6533;6534;6535;6536;6537;6538;6539;6540;6541;6542;6543;6544;6545;6546;6547;6548;6549;6550;6551 3944;3945;3946;3947;3948;3949;3950;3951;3952;3953;3954;3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965 3950 22 ACGFTLPNAPLTPR Unmodified 1513.7711 0.77113304 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 41.206 39.088 2 5.2878E-07 13746 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 158.41 157.34 82141000 0 0 0 18210000 18937000 19824000 0 0 0 1261200 1934300 1021200 0 0 0 0 0 0 0 0 0 7716300 6558300 6678500 320 1904 312 6552;6553;6554;6555;6556;6557;6558;6559;6560 3966;3967;3968 3966 3 ACGKPVNYHFAPR Unmodified 1515.7405 0.74050162 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 13.026 13.828 3 1.2908E-05 4267 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.5 98.422 103040000 27515000 25692000 26418000 0 0 0 5582200 6198000 9315600 0 0 0 2320100 0 0 0 0 0 0 0 0 0 0 0 321 202 313 6561;6562;6563;6564;6565;6566;6567 3969;3970;3971 3969 3 ACHGLFPK Unmodified 928.45891 0.45890703 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.161 14.725 2 0.05725 4568 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.246 52.708 89392000 3080900 0 0 0 0 0 4476800 3888500 6276800 4806300 4525300 4881200 7605500 5167100 5779600 2934200 0 0 8343800 7961600 8861400 4688300 2772600 3341800 322 1781 314 6568;6569;6570;6571;6572;6573;6574;6575;6576;6577;6578;6579;6580;6581;6582;6583;6584 3972;3973 3972 2 ACIGIITNPVNTTVAIAAEVLK Unmodified 2267.2559 0.2559037 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.6 54.127 2;3 1.1447E-21 26674 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 159.06 156.93 8408900000 1389100000 1274400000 1306900000 0 0 0 518870000 475940000 451080000 0 0 0 363840000 365860000 339890000 0 0 0 666770000 630780000 625430000 0 0 0 323 1642 315 6585;6586;6587;6588;6589;6590;6591;6592;6593;6594;6595;6596;6597;6598;6599;6600;6601;6602;6603;6604;6605;6606;6607;6608 3974;3975;3976;3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992;3993;3994;3995 3982 22 ACIGIITNPVNTTVAIAAEVLKK Unmodified 2395.3509 0.35086671 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.632 53.184 3 5.2605E-22 26085 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 168.78 167.84 3193000000 591090000 569250000 562550000 0 0 0 181420000 162710000 147430000 0 0 0 99282000 94921000 100140000 0 0 0 222970000 232100000 229100000 0 0 0 324 1642 316 6609;6610;6611;6612;6613;6614;6615;6616;6617;6618;6619;6620 3996;3997;3998;3999;4000;4001;4002;4003;4004 4000 9 ACLGSLQAMR Unmodified 1105.5372 0.5372337 1612 P55135 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 24.654 23.854 2 0.013956 10881 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 68.383 53.232 58638000 4361900 0 5647600 0 0 0 4519000 7396900 6408700 0 0 0 3506800 3841300 0 2237500 2009500 2196800 4770900 6798900 4942200 0 0 0 325 1612 317 6621;6622;6623;6624;6625;6626;6627;6628;6629;6630;6631;6632;6633 4005 4005 1 ACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPR Unmodified 3813.9467 0.94673751 135 P06968 dut Deoxyuridine 5'-triphosphate nucleotidohydrolase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.168 53.695 3 3.8962E-29 26492 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 167.01 160.91 484650000 10614000 50928000 4885300 0 0 0 38695000 29125000 33002000 0 0 0 48636000 50129000 46931000 0 0 0 59497000 55237000 56972000 0 0 0 326 135 318 6634;6635;6636;6637;6638;6639;6640;6641;6642;6643;6644;6645 4006;4007;4008;4009;4010;4011;4012 4007 7 ACMNMGTLSGAPK Unmodified 1336.5938 0.5937623 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 23.438 22.811 2 9.6944E-07 9680 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 135.86 130.08 99914000 27333000 34390000 32777000 1786300 1961700 1665800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 327 46 319 6646;6647;6648;6649;6650;6651 4013;4014 4014 2 ACQALLR Unmodified 830.44326 0.44325696 1370 P31475 yieP Uncharacterized HTH-type transcriptional regulator YieP yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.487 15.116 2 0.0050338 5183 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.33 85.175 290760000 22573000 21671000 0 1320200 0 835570 30462000 31666000 35773000 1428400 0 0 23584000 21289000 23087000 866490 0 676560 25528000 22258000 26524000 0 1219500 0 328 1370 320 6652;6653;6654;6655;6656;6657;6658;6659;6660;6661;6662;6663;6664;6665;6666;6667;6668 4015 4015 1 ACQNYGPLYK Unmodified 1212.5597 0.55974328 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 19.586 20.106 2 0.0022108 7670 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.229 77.222 131610000 22504000 15986000 17052000 0 0 0 12867000 0 14284000 0 0 0 8437300 6904800 8340300 0 0 0 7948500 9372200 7912400 0 0 0 329 1758 321 6669;6670;6671;6672;6673;6674;6675;6676;6677;6678;6679 4016;4017;4018 4018 3 ACQTAGMDFDSTQAHSALYDTER Unmodified 2574.0751 0.075115151 1335 P30014 rnt Ribonuclease T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.871 28.52 3 1.3977E-28 13250 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 183.86 183.86 240670000 21646000 20005000 19173000 0 0 0 17035000 15249000 14865000 0 0 0 19293000 19342000 20663000 0 0 0 18727000 28245000 26431000 0 0 0 330 1335 322 6680;6681;6682;6683;6684;6685;6686;6687;6688;6689;6690;6691 4019;4020;4021;4022;4023;4024;4025;4026;4027;4028;4029;4030 4024 12 ACQVACSEWNDIR Unmodified 1607.6821 0.68206004 599 P0AAJ5;P0AAJ3 fdoH;fdnH Formate dehydrogenase-O iron-sulfur subunit;Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit yes no 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 27.199 25.942 2 0.00062733 11384 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 78.908 69.953 27460000 0 5501400 6700200 0 7259200 0 0 0 0 0 797650 920570 3680200 0 2601200 0 0 0 0 0 0 0 0 0 331 599 323 6692;6693;6694;6695;6696;6697;6698 4031;4032;4033 4032 0 ACSNIHILR Unmodified 1082.5655 0.56549736 42 P00861 lysA Diaminopimelate decarboxylase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 14.903 15.621 2 0.10647 5251 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 47.749 38.161 11055000 5933000 3118900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2003400 0 0 0 0 332 42 324 6699;6700;6701 4034 4034 0 ACVIPEGMVIGENAEEDAR Unmodified 2058.935 0.93503984 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 40.775 39.109 2;3 1.8126E-14 19173 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 196.11 188.2 304330000 29837000 26835000 22838000 0 0 0 37858000 38981000 36667000 0 0 0 23015000 20439000 22895000 0 0 0 17485000 13626000 13850000 0 0 0 333 283 325 6702;6703;6704;6705;6706;6707;6708;6709;6710;6711;6712;6713;6714;6715;6716;6717;6718;6719;6720;6721;6722;6723;6724;6725 4035;4036;4037;4038;4039;4040;4041;4042;4043;4044;4045;4046;4047;4048;4049;4050;4051;4052 4044 18 ACVIPEGMVIGENAEEDARR Unmodified 2215.0362 0.03615087 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 34.953 33.487 3 2.8199E-18 16438 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 165.8 150.71 566170000 65945000 55370000 48724000 0 0 0 82575000 69210000 77168000 0 0 0 38181000 35677000 40623000 0 0 0 25674000 27024000 0 0 0 0 334 283 326 6726;6727;6728;6729;6730;6731;6732;6733;6734;6735;6736 4053;4054;4055;4056;4057;4058;4059;4060;4061;4062;4063 4053 11 ACVTADK Unmodified 763.35344 0.3534389 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 2 1 1 1 2 2 1 1 2 1 2 1 6.1657 7.0304 2 0.006056 1280 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.068 46.948 202240000 8610100 11483000 9186300 1435700 0 2154100 37030000 47974000 38921000 0 0 0 5237100 5045300 12371000 0 0 0 6797800 8006400 7989700 0 0 0 335 122 327 6737;6738;6739;6740;6741;6742;6743;6744;6745;6746;6747;6748;6749;6750;6751;6752;6753;6754;6755;6756;6757;6758 4064;4065;4066;4067;4068;4069;4070;4071;4072 4072 9 ACYALRPEGINWPENDDGLPSFR Unmodified 2676.2391 0.23908443 103 P04995 sbcB Exodeoxyribonuclease I yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.914 45.524 3 0.0039921 21289 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 51.39 48.765 136470000 21813000 17508000 16433000 0 0 0 9320000 9456400 7340800 0 0 0 8778500 8900700 8211900 0 0 0 10646000 8505600 9555400 0 0 0 336 103 328 6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770 4073 4073 1 ADAAFDNR Unmodified 878.38824 0.38824451 1826 P76170 ynfB UPF0482 protein YnfB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 12.112 12.983 2 0.15592 3667 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 48.036 40.104 27003000 0 4290200 0 0 0 0 0 0 3634300 0 0 0 3540000 0 3070500 0 0 0 0 7326200 5141400 0 0 0 337 1826 329 6771;6772;6773;6774;6775;6776 4074 4074 0 ADAATAISELNALGVK Unmodified 1542.8253 0.82533668 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 2 2 1 1 1 1 2 1 1 1 47.553 46.078 2 3.6741E-06 18821 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 92.247 83.058 90398000 0 0 0 0 0 0 8163500 9845400 0 7758200 10821000 10698000 11303000 8293700 0 1748400 0 844070 0 0 12353000 2754500 3408000 2407600 338 1475 330 6777;6778;6779;6780;6781;6782;6783;6784;6785;6786;6787;6788;6789;6790;6791;6792 4075;4076;4077 4075 1 ADAEEAAR Unmodified 831.37226 0.37226009 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 2 1 1 1 1 1 1 1 6.0899 6.9324 2 0.00069413 1639 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.12 80.072 429150000 56856000 57896000 57970000 0 0 0 0 0 0 0 0 0 40978000 37620000 39556000 0 0 0 49439000 45889000 42947000 0 0 0 339 62 331 6793;6794;6795;6796;6797;6798;6799;6800;6801;6802 4078;4079;4080 4080 3 ADAEKAEETSNR Unmodified 1319.5953 0.59533675 1829 P76177 ydgH Protein YdgH yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 10.25 10.448 2;3 3.866E-05 1868 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 81.565 78.523 21754000 0 0 0 0 0 0 0 0 0 4620800 4987300 8865300 0 0 0 0 0 0 0 0 0 0 3280400 0 340 1829 332 6803;6804;6805;6806;6807 4081;4082;4083 4081 3 ADAFAVIVK Unmodified 932.53312 0.53311783 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 33.212 31.758 1;2 0.0011519 15100 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.853 61.434 13008000000 1156000000 1070300000 929370000 0 2141400 2521000 1658500000 1486700000 1507400000 0 0 0 846500000 787890000 728520000 0 0 0 926330000 976700000 929040000 0 0 0 341 399 333 6808;6809;6810;6811;6812;6813;6814;6815;6816;6817;6818;6819;6820;6821;6822;6823;6824;6825;6826;6827;6828;6829;6830;6831;6832;6833 4084;4085;4086;4087;4088;4089;4090;4091;4092;4093;4094;4095;4096;4097;4098;4099;4100;4101;4102;4103 4092 17 ADAFGLER Unmodified 877.42938 0.42938104 175 P08179 purN Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 24.17 23.237 2 0.00088175 10039 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.17 107.45 131940000 21087000 16093000 14540000 0 0 248420 10808000 8935700 10495000 0 0 0 0 0 12995000 0 0 0 11754000 13795000 11188000 0 0 0 342 175 334 6834;6835;6836;6837;6838;6839;6840;6841;6842;6843;6844 4104;4105;4106;4107 4107 4 ADAIFIEELR Unmodified 1175.6186 0.61863837 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.742 41.073 2 0.00017736 20542 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 123.35 93.101 616700000 47138000 42651000 36954000 0 0 0 44601000 41612000 38171000 0 0 0 60258000 58631000 56210000 0 0 0 65035000 61345000 64098000 0 0 0 343 86 335 6845;6846;6847;6848;6849;6850;6851;6852;6853;6854;6855;6856 4108;4109;4110;4111;4112;4113;4114;4115 4108 8 ADAIFIEELRK Unmodified 1303.7136 0.71360139 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.898 31.458 3 0.00026255 14902 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.184 75.972 159360000 13814000 9645300 10417000 0 0 0 11746000 13004000 9472100 0 0 0 14579000 17370000 17027000 0 0 0 9870500 14628000 17791000 0 0 0 344 86 336 6857;6858;6859;6860;6861;6862;6863;6864;6865;6866;6867;6868 4116;4117;4118;4119;4120;4121;4122;4123;4124;4125 4120 10 ADAKPEADAK Unmodified 1014.4982 0.49818889 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.3097 6.1588 2 5.3238E-05 962 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 144.65 108.09 1774400000 104550000 95465000 78075000 0 0 0 180120000 218740000 217480000 0 0 0 135360000 138600000 150680000 0 0 0 157490000 156250000 141560000 0 0 0 345 1572 337 6869;6870;6871;6872;6873;6874;6875;6876;6877;6878;6879;6880 4126;4127;4128;4129;4130;4131;4132;4133 4133 8 ADALAGWVNHFLLGLGVTQPK Unmodified 2206.1899 0.18987304 418 P0A8C4 ygfB UPF0149 protein YgfB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 1 2 55.344 53.876 2;3 2.6984E-32 26774 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 222.3 217.9 1562800000 151290000 129780000 134450000 4293200 3108000 3714400 171200000 164090000 170910000 22105000 0 0 82195000 79057000 96785000 0 0 0 127460000 89890000 132520000 0 0 0 346 418 338 6881;6882;6883;6884;6885;6886;6887;6888;6889;6890;6891;6892;6893;6894;6895;6896;6897;6898;6899;6900;6901;6902;6903;6904;6905 4134;4135;4136;4137;4138;4139;4140;4141;4142;4143;4144;4145;4146;4147 4137 12 ADALPAFEK Unmodified 960.49165 0.49164694 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 25.706 24.802 2 0.0018271 11077 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.308 63.153 263060000 108660000 78923000 75472000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 347 1420 339 6906;6907;6908 4148;4149;4150 4149 3 ADAPGVYVGEK Unmodified 1104.5451 0.54513908 1629 P60720 lipB Octanoyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.65 19.215 2 0.076964 7279 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 43.308 38.898 144010000 14948000 16830000 9533800 0 0 0 8262400 13506000 9705300 0 0 0 9201000 11035000 8853800 0 0 0 14338000 13764000 14036000 0 0 0 348 1629 340 6909;6910;6911;6912;6913;6914;6915;6916;6917;6918;6919;6920 4151 4151 0 ADAPLIQWDATSATLK Unmodified 1699.8781 0.87810054 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 45.497 44.001 2;3 2.7729E-10 21552 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 186.58 169.95 7254700000 93336000 96867000 88418000 0 0 0 1178900000 1116000000 1104600000 0 2319900 1339100 645950000 652710000 577830000 0 0 0 567160000 573500000 555700000 0 0 0 349 654 341 6921;6922;6923;6924;6925;6926;6927;6928;6929;6930;6931;6932;6933;6934;6935;6936;6937;6938;6939;6940;6941;6942;6943;6944;6945;6946 4152;4153;4154;4155;4156;4157;4158;4159;4160;4161;4162;4163;4164;4165;4166;4167;4168;4169;4170;4171 4163 20 ADAPVAGK Unmodified 727.38645 0.38645359 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.403 11.219 2 0.0098009 2543 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 79.451 69.268 2652800000 76092000 58445000 58983000 0 0 0 423940000 357150000 352910000 0 0 0 273880000 235920000 240920000 0 0 0 224900000 174920000 174710000 0 0 0 350 1806 342 6947;6948;6949;6950;6951;6952;6953;6954;6955;6956;6957;6958 4172;4173;4174;4175;4176;4177;4178;4179;4180;4181;4182 4172 8 ADAVLHDTPNILYFIK Unmodified 1828.9723 0.97233527 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 49.708 48.307 2;3 1.9843E-13 23867 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 194.7 186.59 7007300000 1422800000 1332300000 1335200000 3047400 2358000 2156500 209330000 204500000 188850000 0 0 0 558710000 461270000 450640000 0 0 0 271260000 292350000 272490000 0 0 0 351 877 343 6959;6960;6961;6962;6963;6964;6965;6966;6967;6968;6969;6970;6971;6972;6973;6974;6975;6976;6977;6978;6979;6980;6981;6982;6983;6984;6985 4183;4184;4185;4186;4187;4188;4189;4190;4191;4192;4193;4194;4195;4196;4197;4198;4199;4200;4201;4202;4203;4204;4205;4206;4207 4188 25 ADAVVVLENDLHR Unmodified 1449.7576 0.75759147 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 34.416 32.908 2;3 3.184E-09 16138 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 180.07 180.07 1823200000 69990000 63956000 60611000 14819000 18493000 17730000 151340000 139300000 129800000 11296000 13430000 11477000 135040000 152530000 117820000 10728000 6736200 9970300 209400000 186390000 211600000 27393000 28185000 25173000 352 1427 344 6986;6987;6988;6989;6990;6991;6992;6993;6994;6995;6996;6997;6998;6999;7000;7001;7002;7003;7004;7005;7006;7007;7008;7009;7010;7011;7012;7013;7014;7015;7016;7017;7018;7019;7020;7021;7022;7023;7024;7025;7026;7027 4208;4209;4210;4211;4212;4213;4214;4215;4216;4217;4218;4219;4220;4221;4222;4223;4224;4225;4226;4227;4228;4229;4230;4231;4232;4233;4234;4235;4236;4237;4238;4239;4240;4241;4242;4243;4244;4245;4246 4213 39 ADAYVMAFGSYSTAMLK Unmodified 1824.8426 0.84264301 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.213 49.867 2 0.00023498 19933 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 70.622 65.237 82549000 0 0 0 2870300 2536300 2343300 5477400 6007300 0 7038100 8553800 11272000 0 3235600 3657800 0 0 0 6186200 6024600 0 6657200 5841800 4846900 353 252 345 7028;7029;7030;7031;7032;7033;7034;7035;7036;7037;7038;7039;7040;7041;7042 4247;4248;4249 4248 2 ADCCEIWTDVDGVYTCDPR Unmodified 2330.9242 0.92421716 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 1 2 2 2 44.908 43.438 2;3 2.6854E-17 21033 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 163.27 163.27 177310000 27194000 28219000 26774000 0 0 0 7004200 3105900 7558600 0 0 0 9788100 9643000 3873500 0 0 0 18993000 19562000 15594000 0 0 0 354 34 346 7043;7044;7045;7046;7047;7048;7049;7050;7051;7052;7053;7054;7055;7056;7057;7058;7059;7060;7061;7062;7063;7064 4250;4251;4252;4253;4254;4255;4256 4253 6 ADCLGIIGVAR Unmodified 1143.607 0.60702783 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.351 33.932 2 0.00026545 16325 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.05 102.14 3319800000 350540000 327030000 298000000 1724200 1551500 1914200 0 221700000 223620000 0 2988600 2947800 285300000 284830000 277740000 2356800 1842900 1231900 349630000 343340000 340170000 1373000 0 0 355 161 347 7065;7066;7067;7068;7069;7070;7071;7072;7073;7074;7075;7076;7077;7078;7079;7080;7081;7082;7083;7084;7085 4257;4258;4259;4260;4261;4262;4263;4264;4265;4266;4267;4268 4263 12 ADDAISEQLAQLK Unmodified 1400.7147 0.7147236 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 2 2 1 1 1 2 2 2 2 2 2 2 1 1 37.725 35.94 2;3 3.5264E-09 17473 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 173.37 163.86 976220000 128780000 130260000 107880000 5513900 5533900 5324800 51655000 69535000 73282000 6781700 6310000 5754800 52404000 48543000 64858000 0 0 0 61035000 67378000 74290000 4578900 3103700 3430300 356 956 348 7086;7087;7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101;7102;7103;7104;7105;7106;7107;7108;7109;7110;7111;7112;7113;7114;7115;7116;7117;7118;7119;7120;7121 4269;4270;4271;4272;4273;4274;4275;4276;4277;4278;4279;4280;4281;4282;4283;4284;4285;4286 4277 18 ADDALWR Unmodified 845.40317 0.40316629 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.27 23.351 2 0.00026666 8227 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 160.77 155.95 734580000 0 0 0 412510 376150 0 113770000 93396000 101920000 66186000 66659000 59977000 28227000 27270000 26162000 7722800 5227400 5390900 32881000 36200000 31496000 10252000 10733000 10318000 357 1088 349 7122;7123;7124;7125;7126;7127;7128;7129;7130;7131;7132;7133;7134;7135;7136;7137;7138;7139;7140;7141 4287;4288;4289;4290;4291;4292;4293;4294 4290 7 ADDFIEALFAR Unmodified 1266.6245 0.62445203 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.975 53.521 2 1.778E-05 26334 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.09 149.31 519480000 42072000 42228000 37840000 813080 1013500 934590 55398000 48345000 41926000 4552300 3310100 4962700 31446000 29565000 39449000 0 0 0 41545000 45761000 44658000 2129000 0 1531600 358 1052 350 7142;7143;7144;7145;7146;7147;7148;7149;7150;7151;7152;7153;7154;7155;7156;7157;7158;7159;7160;7161 4295;4296;4297;4298;4299;4300;4301;4302;4303;4304;4305;4306 4298 12 ADDIQIR Unmodified 829.42938 0.42938104 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.516 16.323 2 0.00021486 5263 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 164.78 70.612 1178400000 143560000 109320000 89726000 0 0 0 107390000 121080000 128900000 0 0 0 77347000 63267000 57909000 0 0 0 102150000 88758000 89018000 0 0 0 359 1375 351 7162;7163;7164;7165;7166;7167;7168;7169;7170;7171;7172;7173 4307;4308;4309;4310;4311;4312;4313;4314;4315;4316;4317;4318 4317 12 ADDYVHEKPWQGIGVGAAVGLVLGLLLAR Unmodified 3016.6498 0.64982593 861 P0AEH5 elaB Protein ElaB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 2 2 1 1 1 1 1 55.86 54.456 3;4 1.1457E-16 20048 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 152.41 147.51 407410000 12192000 14494000 10683000 70306000 58615000 79024000 35881000 0 0 38943000 32151000 32975000 3252400 0 0 0 0 0 0 4837600 4165700 5356600 0 4532200 360 861 352 7174;7175;7176;7177;7178;7179;7180;7181;7182;7183;7184;7185;7186;7187;7188;7189;7190;7191;7192;7193 4319;4320;4321;4322 4322 4 ADEIQIYK Unmodified 978.50221 0.50221163 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.249 21.991 2 0.0088929 9029 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 91.626 82.681 545680000 71915000 61269000 58006000 0 0 0 34269000 35134000 37782000 0 0 0 34340000 45056000 32507000 0 0 0 46311000 46979000 42113000 0 0 0 361 508 353 7194;7195;7196;7197;7198;7199;7200;7201;7202;7203;7204;7205 4323;4324;4325;4326;4327;4328 4327 0 ADEQILDIGDASAQELAEILK Unmodified 2241.1376 0.13762228 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.487 54.014 2;3 1.7801E-21 26758 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 215.48 195.9 21273000000 1935900000 1984800000 1640700000 0 0 0 2279100000 2016500000 2247700000 0 0 0 1414200000 1499500000 1427100000 0 0 0 1505200000 1730200000 1591900000 0 0 0 362 321 354 7206;7207;7208;7209;7210;7211;7212;7213;7214;7215;7216;7217;7218;7219;7220;7221;7222;7223;7224;7225;7226;7227;7228;7229 4329;4330;4331;4332;4333;4334;4335;4336;4337 4336 7 ADERPGK Unmodified 771.38752 0.38751622 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 5.1162 5.9921 2 0.0024094 806 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 130.77 115.13 887670000 182580000 143400000 137050000 214290 0 26121 0 0 0 0 0 0 57620000 54595000 61292000 0 0 0 89987000 81534000 79371000 0 0 0 363 31 355 7230;7231;7232;7233;7234;7235;7236;7237;7238;7239;7240 4338;4339;4340;4341;4342;4343;4344;4345 4344 8 ADESPIQHLAR Unmodified 1235.6258 0.62584901 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 2 1 1 2 2 2 1 2 17.498 18.133 2;3 0.0043989 6610 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 74.464 64.234 92771000 12102000 14378000 13355000 0 0 0 4307600 8408100 5780800 0 1352000 0 5765400 0 5521800 0 0 0 8498300 7304400 5997000 0 0 0 364 1664 356 7241;7242;7243;7244;7245;7246;7247;7248;7249;7250;7251;7252;7253;7254;7255;7256;7257;7258;7259;7260 4346;4347;4348;4349 4347 3 ADEYVRENPWTGVGIGAAIGVVLGVLLSRR Unmodified 3166.7251 0.72511613 1689 P64581 yqjD Uncharacterized protein YqjD yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.842 54.377 4 4.5213E-23 27019 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.05 159.43 428630000 0 0 0 34122000 27362000 32996000 71648000 60239000 75153000 38831000 30743000 40264000 0 0 0 0 0 0 5326100 3627100 0 4660900 3656300 0 365 1689 357 7261;7262;7263;7264;7265;7266;7267;7268;7269;7270;7271;7272;7273 4350;4351;4352;4353;4354;4355;4356 4352 7 ADFEEHKDEVDWL Unmodified 1631.7104 0.71036651 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.812 35.155 2 0.022172 16937 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 62.633 61.943 108350000 22822000 12640000 13757000 0 0 0 9053400 7550200 5442700 0 0 0 5321300 4643000 4678800 0 0 0 6443900 7461600 8533700 0 0 0 366 1429 358 7274;7275;7276;7277;7278;7279;7280;7281;7282;7283;7284;7285 4357;4358;4359 4359 2 ADFLCGTGQK Unmodified 1095.5019 0.50189405 831 P0AE37 astA Arginine N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 19.896 20.492 2 0.0041884 7991 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.679 72.82 93872000 32389000 30855000 30628000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 367 831 359 7286;7287;7288 4360;4361;4362 4360 0 ADFLSDPNK Unmodified 1005.4767 0.47672516 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.398 21.746 2 0.00030936 8705 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.04 97.249 530170000 84910000 93002000 84508000 0 0 0 61631000 56755000 51418000 0 0 0 11439000 12465000 7490200 0 0 0 20158000 20129000 26265000 0 0 0 368 1174 360 7289;7290;7291;7292;7293;7294;7295;7296;7297;7298;7299;7300 4363;4364;4365;4366;4367 4365 5 ADFLTVHGLWPGLPK Unmodified 1649.893 0.89296274 1175 P21338 rna Ribonuclease I yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.921 48.515 3 0.0097139 23833 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 45.33 39.902 81763000 13553000 16314000 13712000 0 0 0 5659100 4961300 3768700 0 0 0 4067600 3551000 4832800 0 0 0 3998700 3294800 4049900 0 0 0 369 1175 361 7301;7302;7303;7304;7305;7306;7307;7308;7309;7310;7311;7312 4368 4368 1 ADFPVLSR Unmodified 903.48142 0.48141661 1906 P77444 sufS Cysteine desulfurase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.487 29.013 2 0.0023384 13417 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.33 75.218 157010000 20477000 19838000 19294000 3807600 3145900 2483200 14987000 13577000 14038000 0 0 0 7317800 6177800 0 0 0 0 8232400 10086000 9559400 1889900 2094000 0 370 1906 362 7313;7314;7315;7316;7317;7318;7319;7320;7321;7322;7323;7324;7325;7326;7327;7328 4369;4370;4371;4372;4373;4374;4375;4376;4377 4377 9 ADFREEANK Unmodified 1078.5043 0.5043369 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.039 11.855 2 1.7274E-05 2943 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.77 147.29 217800000 17837000 20177000 17154000 0 0 0 19808000 18874000 14890000 0 0 0 13659000 18721000 15045000 0 0 0 19415000 19394000 22832000 0 0 0 371 63 363 7329;7330;7331;7332;7333;7334;7335;7336;7337;7338;7339;7340 4378;4379;4380;4381;4382;4383;4384;4385;4386 4380 9 ADFTDAVIDNAFEGGYMAGR Unmodified 2118.9317 0.93166902 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 53.699 52.234 2 6.247E-30 25557 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 214.23 205.93 97102000 26330000 22701000 24467000 0 0 0 0 7734400 0 0 0 0 0 0 0 0 0 0 15870000 0 0 0 0 0 372 740 364 7341;7342;7343;7344;7345 4387 4387 1 ADGAILVDFWAEWCGPCK Unmodified 2093.9339 0.93391763 571 P0AA25 trxA Thioredoxin-1 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 3 2 2 2 1 55.497 54.023 2;3 8.4474E-38 26619 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 247.88 247.88 2414900000 290190000 271830000 232650000 0 0 0 181340000 185180000 169480000 2079800 0 0 138350000 152990000 128400000 0 0 0 212990000 233310000 214870000 1240200 0 0 373 571 365 7346;7347;7348;7349;7350;7351;7352;7353;7354;7355;7356;7357;7358;7359;7360;7361;7362;7363;7364;7365;7366;7367;7368;7369;7370;7371;7372 4388;4389;4390;4391;4392;4393;4394;4395;4396;4397;4398;4399;4400;4401;4402;4403;4404;4405;4406;4407 4394 18 ADGAMDAGNMLKPALAR Unmodified 1700.8338 0.83380965 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 31.705 30.169 2;3 7.7103E-24 14152 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 234.65 228.41 2180700000 298230000 263730000 231820000 3647000 3978800 4511700 230090000 227570000 236020000 11332000 8184000 8671100 111180000 100960000 101340000 0 0 0 115770000 112300000 108840000 0 0 2545100 374 1662 366 7373;7374;7375;7376;7377;7378;7379;7380;7381;7382;7383;7384;7385;7386;7387;7388;7389;7390;7391;7392;7393;7394;7395;7396;7397;7398;7399;7400;7401;7402;7403;7404;7405;7406;7407;7408 4408;4409;4410;4411;4412;4413;4414;4415;4416;4417;4418;4419;4420;4421;4422;4423;4424;4425;4426;4427;4428 4418 21 ADGAMSALPVLMVTAEAK Unmodified 1773.9005 0.90049224 837 P0AE67 cheY Chemotaxis protein CheY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 52.579 51.369 2;3 2.2411E-05 24983 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.94 84.695 815680000 270940000 260350000 246350000 2421500 2242000 3026300 0 0 0 0 0 0 8849800 7112100 7019700 0 0 0 0 7372800 0 0 0 0 375 837 367 7409;7410;7411;7412;7413;7414;7415;7416;7417;7418;7419;7420;7421 4429;4430;4431;4432;4433;4434 4434 6 ADGAYLYDVDGK Unmodified 1285.5826 0.5826468 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.63 27.329 2 1.8156E-06 12444 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.99 120.6 1888500000 159090000 119670000 121480000 3438200 3290100 2864800 141610000 131170000 124900000 22455000 22586000 18297000 163020000 146000000 130220000 7391600 4966500 6243800 167330000 180220000 185100000 9933600 8933500 8331400 376 1227 368 7422;7423;7424;7425;7426;7427;7428;7429;7430;7431;7432;7433;7434;7435;7436;7437;7438;7439;7440;7441;7442;7443;7444;7445;7446 4435;4436;4437;4438;4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450;4451;4452;4453;4454 4450 20 ADGIGSLLPAAR Unmodified 1139.6299 0.62987176 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.683 36.01 2 2.8461E-05 16742 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 116.3 101.15 1338200000 163990000 153900000 134310000 0 0 0 130760000 111860000 104750000 0 0 0 75485000 67448000 77099000 0 0 0 109430000 101940000 107230000 0 0 0 377 1170 369 7447;7448;7449;7450;7451;7452;7453;7454;7455;7456;7457;7458 4455;4456;4457;4458;4459;4460;4461;4462;4463;4464;4465;4466 4464 12 ADGINPEELLGNSSAAAPR Unmodified 1880.9228 0.9228189 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 41.789 40.697 2;3 1.9486E-29 19722 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 259.1 234.24 1855200000 108470000 113450000 107320000 0 0 0 25816000 29872000 26167000 0 0 0 54678000 51416000 45982000 347370000 330310000 363330000 80147000 81649000 89188000 0 0 0 378 729 370 7459;7460;7461;7462;7463;7464;7465;7466;7467;7468;7469;7470;7471;7472;7473;7474;7475;7476 4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478;4479;4480;4481 4475 15 ADGLGTADHSALACYYEK Unmodified 1940.8574 0.85744145 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 28.062 26.878 2;3 1.3995E-80 12634 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 321.85 321.85 2234600000 216520000 196430000 200040000 0 0 0 220150000 207290000 213680000 0 0 818530 174150000 170070000 193830000 0 0 0 135620000 162870000 143110000 0 0 0 379 671 371 7477;7478;7479;7480;7481;7482;7483;7484;7485;7486;7487;7488;7489;7490;7491;7492;7493;7494;7495;7496;7497;7498;7499;7500;7501 4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497;4498;4499;4500 4483 19 ADGLLPASSK Unmodified 957.51311 0.51311067 1905 P77434 alaC Glutamate-pyruvate aminotransferase AlaC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.354 18.948 2 0.094323 7406 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 43.492 8.5611 188680000 14008000 12834000 12290000 0 0 0 8527500 10590000 7832500 0 0 0 94291000 4612100 4975100 0 0 0 9153200 4941500 4622400 0 0 0 380 1905 372 7502;7503;7504;7505;7506;7507;7508;7509;7510;7511;7512;7513 4501 4501 0 ADGSGTSFVFTSYLAK Unmodified 1649.7937 0.7937022 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 46.813 45.273 2 1.6543E-08 21163 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 150.68 136.26 695730000 0 37687000 33831000 0 0 0 71683000 63341000 61073000 3453200 0 727610 70509000 62043000 50387000 0 0 0 86490000 84266000 70239000 0 0 0 381 994 373 7514;7515;7516;7517;7518;7519;7520;7521;7522;7523;7524;7525;7526 4502;4503;4504;4505;4506;4507;4508;4509 4508 8 ADGSQEVVPCR Unmodified 1216.5506 0.55063516 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.995 14.816 2 8.4424E-20 4684 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 236.56 236.56 1485400000 378920000 349280000 316770000 691890 0 0 83873000 86413000 80981000 0 0 591280 20579000 19449000 14263000 0 0 0 48905000 42005000 42671000 0 0 0 382 1254 374 7527;7528;7529;7530;7531;7532;7533;7534;7535;7536;7537;7538;7539;7540 4510;4511;4512;4513;4514;4515;4516;4517;4518;4519;4520;4521 4517 12 ADGTYEK Unmodified 782.34465 0.34464836 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS 2 2 1 1 1 1 1 1 1 1 5.7495 6.5841 2 0.0067291 1654 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.262 87.875 143840000 29961000 33109000 29348000 0 0 0 0 4587700 0 0 0 0 6573300 6089100 5515200 0 0 0 9125500 8804000 10727000 0 0 0 383 887 375 7541;7542;7543;7544;7545;7546;7547;7548;7549;7550;7551;7552 4522;4523;4524;4525;4526 4523 5 ADGVIFQTAV Unmodified 1019.5288 0.52876073 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.788 44.245 2 0.020818 21566 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.682 55.991 1307700000 171460000 145250000 124190000 1238900 2012600 2762400 67963000 65617000 57295000 0 0 0 81081000 74720000 75457000 0 0 0 147170000 153250000 131580000 2205900 2611800 1840900 384 1444 376 7553;7554;7555;7556;7557;7558;7559;7560;7561;7562;7563;7564;7565;7566;7567;7568;7569;7570 4527;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538 4530 12 ADHDTFWFDTTR Unmodified 1510.6477 0.64770667 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 1 35.63 34.075 2;3 4.2073E-31 16222 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 265.55 255.02 3545600000 322190000 300880000 290390000 2126300 1703100 1320300 265350000 235150000 240250000 2264000 2481700 2301000 297590000 263880000 260170000 1403400 1201100 933800 379780000 337090000 335770000 0 1396600 0 385 183 377 7571;7572;7573;7574;7575;7576;7577;7578;7579;7580;7581;7582;7583;7584;7585;7586;7587;7588;7589;7590;7591;7592;7593;7594;7595;7596;7597;7598;7599;7600;7601;7602;7603;7604;7605 4539;4540;4541;4542;4543;4544;4545;4546;4547;4548;4549;4550;4551;4552;4553;4554;4555;4556;4557;4558;4559;4560;4561;4562 4550 24 ADHFGLAQLHQLR Unmodified 1504.7899 0.78989465 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 3 3 2 1 2 2 2 2 2 2 2 2 1 1 24.89 24.097 2;3;4 0.00020217 10648 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 61.235 54.033 292730000 32789000 48972000 32678000 0 0 0 25863000 11237000 29709000 0 0 0 18468000 15458000 16088000 5550000 5469200 6396900 22146000 11299000 10602000 0 0 0 386 1355 378 7606;7607;7608;7609;7610;7611;7612;7613;7614;7615;7616;7617;7618;7619;7620;7621;7622;7623;7624;7625;7626;7627;7628;7629;7630;7631;7632;7633;7634 4563;4564;4565;4566;4567;4568 4566 3 ADHIYLATDLDR Unmodified 1401.6888 0.6888432 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 2 2 2 1 2 2 2 1 1 1 27.197 25.986 2;3 4.4406E-11 11330 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 144.28 116.3 842800000 61345000 64434000 52064000 0 0 483520 56734000 56510000 55707000 1881300 2345800 2565600 56279000 71556000 64865000 2693800 0 0 101810000 89404000 95601000 2116200 1742600 2662100 387 124 379 7635;7636;7637;7638;7639;7640;7641;7642;7643;7644;7645;7646;7647;7648;7649;7650;7651;7652;7653;7654;7655;7656;7657;7658;7659;7660;7661;7662;7663 4569;4570;4571;4572;4573;4574;4575;4576;4577;4578;4579;4580;4581;4582;4583;4584;4585;4586;4587;4588;4589 4585 21 ADHIYLATDLDREGEAIAWHLR Unmodified 2564.2772 0.2771845 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 1 2 40.76 39.863 4;5 0.00060698 14641 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 64.87 63.991 46789000 0 0 0 0 0 0 0 0 0 0 1852700 0 0 0 0 11624000 9581300 11496000 0 0 0 4143800 1941900 6149600 388 124 380 7664;7665;7666;7667;7668;7669;7670;7671;7672;7673;7674 4590;4591;4592;4593;4594;4595;4596;4597 4590 8 ADHPKPDSLISEHPTAQEAMDAK Unmodified 2487.17 0.17000181 604 P0AAN5 yaiA Uncharacterized protein YaiA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 2 3 3 3 3 20.087 20.499 3;4;5 1.5847E-28 7972 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.39 179.24 1535900000 288470000 294570000 236410000 0 0 0 152340000 170020000 129070000 0 0 0 43551000 34050000 36049000 0 0 0 52649000 47743000 51018000 0 0 0 389 604 381 7675;7676;7677;7678;7679;7680;7681;7682;7683;7684;7685;7686;7687;7688;7689;7690;7691;7692;7693;7694;7695;7696;7697;7698;7699;7700;7701;7702;7703;7704;7705;7706;7707;7708;7709 4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612;4613;4614;4615;4616;4617 4609 20 ADHPLTTPPPK Unmodified 1172.619 0.61897272 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 2 2 1 11.743 12.481 2;3 3.4276E-06 3330 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.88 92.714 909830000 37522000 42522000 34711000 3244500 3485200 3710700 97421000 54559000 74863000 9078000 23526000 15666000 66505000 66449000 68508000 0 0 0 92247000 104500000 102890000 0 0 8425000 390 1426 382 7710;7711;7712;7713;7714;7715;7716;7717;7718;7719;7720;7721;7722;7723;7724;7725;7726;7727;7728;7729;7730;7731;7732;7733;7734;7735;7736;7737;7738;7739;7740;7741;7742 4618;4619;4620;4621;4622;4623;4624;4625;4626;4627;4628;4629;4630;4631;4632;4633;4634;4635;4636;4637;4638;4639 4622 20 ADHQSGTER Unmodified 999.43699 0.43698561 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.269 5.1053 2 0.00057643 694 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 106.68 106.68 80769000 7340300 7260700 9403900 0 0 0 0 0 0 0 0 0 7385900 7099100 4754300 0 0 0 11731000 11366000 14428000 0 0 0 391 97 383 7743;7744;7745;7746;7747;7748;7749;7750;7751 4640;4641;4642;4643;4644;4645;4646;4647;4648 4641 9 ADIAIIATAQNGNK Unmodified 1398.7467 0.74669243 778 P0ADA5 yajG Uncharacterized lipoprotein YajG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 28.571 26.851 2 0.1707 11941 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 32.999 28.951 25022000 0 0 0 0 1137400 1697300 4777400 0 2363600 3346800 2973000 2768800 5957100 0 0 0 0 0 0 0 0 0 0 0 392 778 384 7752;7753;7754;7755;7756;7757;7758;7759 4649 4649 1 ADIAVHSMK Unmodified 970.4906 0.49060109 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.179 13.023 2 0.081944 3465 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 52.591 49.132 201410000 24530000 29819000 22974000 0 0 0 0 13682000 14972000 0 0 0 15951000 14394000 16189000 0 0 0 14419000 15628000 18855000 0 0 0 393 137 385 7760;7761;7762;7763;7764;7765;7766;7767;7768;7769;7770 4650 4650 0 ADIDYNTSEAHTTYGVIGVK Unmodified 2153.0277 0.027677899 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 30.307 28.855 2;3 3.1445E-56 13379 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 321.25 300.58 9012300000 1310600000 1251500000 1093500000 3054800 28826000 29348000 379570000 371510000 346830000 78918000 76218000 60961000 418370000 465190000 453520000 45900000 39328000 41157000 757310000 801480000 799760000 53651000 58152000 47659000 394 374 386 7771;7772;7773;7774;7775;7776;7777;7778;7779;7780;7781;7782;7783;7784;7785;7786;7787;7788;7789;7790;7791;7792;7793;7794;7795;7796;7797;7798;7799;7800;7801;7802;7803;7804;7805;7806;7807;7808;7809;7810;7811;7812;7813;7814;7815 4651;4652;4653;4654;4655;4656;4657;4658;4659;4660;4661;4662;4663;4664;4665;4666;4667;4668;4669;4670;4671;4672;4673;4674;4675;4676;4677;4678;4679;4680;4681;4682;4683;4684;4685 4676 35 ADIEVSTCGVISPLK Unmodified 1587.8178 0.81780846 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 38.689 37.249 2 9.9129E-07 18129 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.31 123.4 105040000 37572000 33861000 33607000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 395 340 387 7816;7817;7818 4686;4687;4688;4689;4690;4691 4686 6 ADILTFHTPLFK Unmodified 1401.7656 0.76563696 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 43.937 42.489 2;3 4.2446E-13 21040 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 202.44 188.85 923650000 118110000 87144000 87151000 0 0 0 89133000 91676000 77519000 0 0 0 58443000 52158000 54443000 0 694870 0 65141000 73390000 68643000 0 0 0 396 111 388 7819;7820;7821;7822;7823;7824;7825;7826;7827;7828;7829;7830;7831;7832;7833;7834;7835;7836;7837;7838;7839;7840;7841;7842;7843 4692;4693;4694;4695;4696;4697;4698;4699;4700;4701 4695 10 ADIPLTFWDYQHHALVATIR Unmodified 2366.2172 0.21715042 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.277 45.741 4 7.5131E-07 22630 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 92.31 90.553 206400000 13189000 11895000 9691400 1243900 1264200 1213900 21823000 23962000 21018000 3123100 2436600 2027500 12945000 16106000 20594000 0 0 0 20271000 0 22538000 1055600 0 0 397 1260 389 7844;7845;7846;7847;7848;7849;7850;7851;7852;7853;7854;7855;7856;7857;7858;7859;7860;7861 4702;4703;4704;4705 4702 3 ADIRPTHNEDLPFQGGALGLFGYDLGR Unmodified 2928.4519 0.4518544 105 P05041 pabB Aminodeoxychorismate synthase component 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 50.713 49.395 4 0.00072393 24054 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.481 54.451 103920000 16678000 0 0 0 0 0 9077900 0 9116400 0 0 0 8861600 8179100 11250000 0 0 0 14033000 14796000 11930000 0 0 0 398 105 390 7862;7863;7864;7865;7866;7867;7868;7869;7870 4706;4707 4706 2 ADISSDQIAAIGITNQR Unmodified 1771.9064 0.90644055 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 6 6 4 2 2 2 5 3 4 1 1 1 5 3 4 2 2 1 37.894 36.137 2;3 5.2892E-89 16977 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 339.87 315.58 6904900000 114420000 97479000 87007000 1589200 0 2697500 875610000 805720000 820260000 6746600 6785000 6153200 717360000 657170000 566340000 2390600 2054600 1727900 744660000 675670000 696970000 5870400 6442500 3819000 399 239 391 7871;7872;7873;7874;7875;7876;7877;7878;7879;7880;7881;7882;7883;7884;7885;7886;7887;7888;7889;7890;7891;7892;7893;7894;7895;7896;7897;7898;7899;7900;7901;7902;7903;7904;7905;7906;7907;7908;7909;7910;7911;7912;7913;7914;7915;7916;7917;7918;7919;7920;7921;7922;7923;7924;7925;7926;7927;7928;7929;7930;7931;7932;7933 4708;4709;4710;4711;4712;4713;4714;4715;4716;4717;4718;4719;4720;4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742;4743;4744;4745;4746;4747;4748;4749;4750;4751;4752;4753;4754;4755;4756;4757;4758;4759;4760;4761 4738 48 ADITLISGSTLGGAEYVAEHLAEK Unmodified 2444.2435 0.24348433 82 P03817 mioC Protein MioC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 52.384 51.143 2;3 1.7297E-40 24900 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.49 162.46 2021700000 220430000 204570000 210160000 0 0 0 107560000 102830000 80325000 0 0 0 135710000 137790000 146220000 0 0 0 235240000 227460000 213450000 0 0 0 400 82 392 7934;7935;7936;7937;7938;7939;7940;7941;7942;7943;7944;7945;7946;7947;7948;7949;7950;7951;7952;7953;7954;7955;7956 4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774 4765 13 ADKPLVGTGMER Oxidation (M) 1288.6445 0.64453555 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 4 4 4 1 1 6 5 5 2 1 2 5 4 5 13.259 13.589 2;3 3.23E-05 2761 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 115.39 107.82 2439200000 17417000 16271000 14046000 0 2123300 0 10753000 12743000 12461000 305880000 186640000 193000000 1988900 2146600 0 482520000 295490000 72977000 12571000 9135800 23275000 263340000 236220000 268220000 401 463 393 7957;7958;7959;7960;7961;7962;7963;7964;7965;7966;7967;7968;7969;7970;7971;7972;7973;7974;7975;7976;7977;7978;7979;7980;7981;7982;7983;7984;7985;7986;7987;7988;7989;7990;7991;7992;7993;7994;7995;7996;7997;7998;7999;8000;8001;8002;8003;8004;8005;8006;8007;8008;8009;8010;8011;8012;8013;8014;8015;8016;8017 4775;4776;4777;4778;4779;4780;4781;4782;4783;4784;4785;4786;4787;4788;4789;4790;4791;4792;4793;4794;4795;4796;4797;4798;4799;4800;4801;4802 4798 250 27 ADKPLVGTGMER Unmodified 1272.6496 0.64962092 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 3 3 3 3 3 3 3 3 2 2 2 3 3 2 3 3 3 14.795 15.335 1;2;3 3.4382E-17 4020 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 221.91 199.27 37915000000 486290000 453610000 404420000 24281000 32994000 24904000 327800000 357750000 359230000 2870800000 2322200000 2394300000 424640000 387730000 400370000 6923800000 4776200000 4915900000 487470000 419040000 465980000 3014200000 2729200000 2911400000 402 463 393 8018;8019;8020;8021;8022;8023;8024;8025;8026;8027;8028;8029;8030;8031;8032;8033;8034;8035;8036;8037;8038;8039;8040;8041;8042;8043;8044;8045;8046;8047;8048;8049;8050;8051;8052;8053;8054;8055;8056;8057;8058;8059;8060;8061;8062;8063;8064;8065;8066;8067;8068;8069;8070;8071;8072;8073;8074;8075;8076;8077;8078;8079;8080;8081 4803;4804;4805;4806;4807;4808;4809;4810;4811;4812;4813;4814;4815;4816;4817;4818;4819;4820;4821;4822;4823;4824;4825;4826;4827;4828;4829;4830;4831;4832;4833;4834;4835;4836;4837;4838;4839;4840;4841;4842;4843;4844;4845;4846;4847;4848;4849;4850;4851;4852;4853 4803 51 ADLDDIK Unmodified 788.3916 0.39159855 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 16.826 17.525 2 0.062465 6312 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.76 16.149 42383000 17336000 10453000 14594000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 403 1822 394 8082;8083;8084 4854;4855;4856 4854 3 ADLDDIKDGK Unmodified 1088.535 0.53496832 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 14.136 14.911 2 3.1731E-05 4813 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.27 82.251 149300000 51865000 49308000 45678000 0 0 0 2452900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 404 1822 395 8085;8086;8087;8088 4857;4858;4859 4857 3 ADLEMQIESLKEELAYLKK Unmodified 2250.1817 0.1817357 6 CON__P02533 yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 50.861 49.441 4 8.7868E-07 20039 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 95.814 65.048 43353000 0 0 0 2663900 0 0 0 0 0 11499000 9227700 8443300 0 0 0 0 0 0 0 0 0 5110100 0 6409600 + 405 6 396 8089;8090;8091;8092;8093;8094 4860;4861;4862 4860 3 ADLEMQIESLTEELAYLKK Unmodified 2223.1345 0.13445116 13 CON__P13645 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 54.688 53.283 3 1.2338E-17 21344 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 163.35 156.58 441190000 0 0 0 35326000 34400000 35991000 0 0 0 36361000 32991000 0 0 0 0 0 0 0 0 0 0 84614000 89638000 91870000 + 406 13 397 8095;8096;8097;8098;8099;8100;8101;8102 4863;4864;4865;4866;4867;4868;4869;4870 4866 8 ADLGIAFDGDGDR Unmodified 1320.5946 0.59460847 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.583 34.026 2 7.3872E-07 16644 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 141.1 141.1 1221400000 74595000 75842000 69991000 0 0 0 118590000 119140000 113450000 0 0 0 109110000 95727000 82514000 0 0 0 125870000 123580000 113020000 0 0 0 407 1360 398 8103;8104;8105;8106;8107;8108;8109;8110;8111;8112;8113;8114 4871;4872;4873;4874;4875;4876;4877;4878;4879;4880;4881;4882 4871 12 ADLIVDTSEMSVHELAEMLR Unmodified 2258.0923 0.092268765 410 P0A894 rapZ RNase adapter protein RapZ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.777 53.329 3 2.75E-07 26353 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105 100.24 152280000 21975000 26226000 21820000 0 0 0 11619000 10315000 10023000 0 0 0 12246000 9205600 7324800 0 0 0 7261200 4337200 9927900 0 0 0 408 410 399 8115;8116;8117;8118;8119;8120;8121;8122;8123;8124;8125;8126 4883;4884 4883 2 ADLLTLR Unmodified 800.4756 0.47560295 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.94 29.485 2 0.00059316 14138 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.02 103.67 281640000 14753000 12651000 11637000 3448700 3261500 3446800 25377000 24411000 24319000 5744400 6515600 7668000 15709000 13619000 12728000 0 2015000 1552100 28061000 23194000 24988000 5286800 5423500 5831700 409 324 400 8127;8128;8129;8130;8131;8132;8133;8134;8135;8136;8137;8138;8139;8140;8141;8142;8143;8144;8145;8146;8147;8148;8149 4885;4886;4887;4888;4889;4890;4891;4892;4893;4894;4895;4896;4897;4898;4899;4900 4889 16 ADLNVPVK Unmodified 854.48617 0.48616764 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.752 20.242 2 0.0025719 7457 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 99.375 71.121 19356000000 1639800000 1661500000 1521100000 0 0 0 2257900000 2540400000 2468100000 0 0 0 1273400000 1123500000 1057400000 0 0 0 1237500000 1325000000 1250800000 0 0 0 410 321 401 8150;8151;8152;8153;8154;8155;8156;8157;8158;8159;8160;8161 4901;4902;4903;4904;4905;4906;4907;4908 4907 8 ADLNVPVKDGK Unmodified 1154.6295 0.62953741 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 2 2 1 1 1 1 1 1 2 2 2 1 1 2 14.956 15.423 2;3 0.00049918 5026 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.096 73.309 5883000000 0 0 0 6500500 5831000 0 815710000 897550000 777710000 8819100 6431300 6071400 299410000 271490000 225970000 1695100 1789200 2231800 810430000 838170000 901730000 1916500 893270 2692100 411 321 402 8162;8163;8164;8165;8166;8167;8168;8169;8170;8171;8172;8173;8174;8175;8176;8177;8178;8179;8180;8181;8182;8183;8184;8185;8186;8187;8188 4909;4910;4911;4912;4913;4914;4915;4916;4917;4918;4919;4920;4921 4917 13 ADLPLLSHNLPADFAALR Unmodified 1933.0421 0.042146171 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.794 49.485 3 3.4314E-07 23267 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 106.94 106.04 1496700000 223750000 230860000 166330000 1594100 2134200 1372200 38208000 42171000 38819000 0 0 0 111000000 100860000 96950000 0 0 0 141590000 141660000 159400000 0 0 0 412 52 403 8189;8190;8191;8192;8193;8194;8195;8196;8197;8198;8199;8200;8201;8202;8203 4922;4923;4924;4925;4926;4927;4928;4929;4930;4931;4932 4930 11 ADLQAQLDSLNK Unmodified 1314.6779 0.67794416 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.766 30.231 2 0.00086964 11230 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 75.229 65.275 117190000 3267800 3910400 5052800 13944000 13278000 14094000 0 0 0 0 7156000 5121900 0 5843500 0 0 0 0 6131100 8267000 9045500 7134100 6670400 8271400 413 1899 404 8204;8205;8206;8207;8208;8209;8210;8211;8212;8213;8214;8215;8216;8217;8218 4933;4934;4935;4936;4937 4934 2 ADLVFGSNSVLR Unmodified 1276.6776 0.67755023 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.81 36.954 2 5.7031E-06 18251 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 133.23 114.92 2101800000 224300000 189460000 191770000 0 0 0 244160000 259730000 264790000 1215400 1222800 1223200 118980000 109560000 122380000 0 0 0 140690000 123320000 108990000 0 0 0 414 1086 405 8219;8220;8221;8222;8223;8224;8225;8226;8227;8228;8229;8230;8231;8232;8233 4938;4939 4938 2 ADLVLAHR Unmodified 893.5083 0.50830006 1129 P16689 phnM Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 14.599 15.339 2 0.036356 5064 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 62.659 39.622 18652000 0 0 0 0 0 0 0 1623000 0 0 0 0 0 0 0 0 0 0 5662300 5828600 5538300 0 0 0 415 1129 406 8234;8235;8236;8237 4940 4940 1 ADLWLAEYYDQR Unmodified 1541.7151 0.71505795 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.159 45.761 2;3 2.1032E-06 22151 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 173.37 169.07 807510000 108590000 88637000 86490000 0 0 0 67157000 65960000 73527000 0 0 0 50343000 45689000 44878000 0 0 0 60373000 56133000 59728000 0 0 0 416 43 407 8238;8239;8240;8241;8242;8243;8244;8245;8246;8247;8248;8249;8250;8251;8252;8253;8254;8255;8256;8257;8258;8259;8260;8261 4941;4942;4943;4944;4945;4946;4947;4948;4949;4950;4951;4952;4953;4954;4955;4956;4957;4958;4959;4960;4961;4962;4963 4957 23 ADMDAETAPK Unmodified 1047.4543 0.45427516 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.107 12.961 2 1.5768E-05 3485 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 151.44 151.44 3237200000 201950000 180150000 208540000 0 0 1540600 326880000 316030000 287730000 0 0 0 268080000 266260000 268720000 0 0 0 298080000 300010000 313220000 0 0 0 417 412 408 8262;8263;8264;8265;8266;8267;8268;8269;8270;8271;8272;8273;8274 4964;4965;4966;4967;4968;4969;4970;4971;4972;4973;4974;4975 4973 12 ADMDAETAPK Oxidation (M) 1063.4492 0.44918978 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 1 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.454 11.269 2 0.0032445 2587 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.264 78.264 239460000 13661000 14712000 15576000 0 0 0 32754000 26727000 24926000 0 0 0 16726000 16422000 17872000 0 0 0 20272000 20388000 19425000 0 0 0 418 412 408 8275;8276;8277;8278;8279;8280;8281;8282;8283;8284;8285;8286 4976;4977;4978;4979;4980;4981 4978 197 4 ADMHYIIR Unmodified 1017.5066 0.5065855 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.685 20.175 2 0.00033875 7994 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 144.83 121.52 421610000 49312000 50564000 41340000 0 0 0 44462000 38025000 43091000 0 0 0 30939000 27070000 34684000 0 0 0 19565000 19353000 23200000 0 0 0 419 1333 409 8287;8288;8289;8290;8291;8292;8293;8294;8295;8296;8297;8298 4982;4983;4984;4985;4986;4987;4988;4989;4990 4982 9 ADMVAHVFHSVASK Unmodified 1497.7398 0.73983291 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 23.496 22.636 2;3;4 1.0117E-11 10105 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 188.91 187.71 1078300000 73383000 77922000 62711000 14499000 14991000 15749000 94588000 97037000 66957000 35394000 34039000 35799000 55267000 59197000 52856000 0 0 0 64910000 87169000 87929000 15282000 15454000 17214000 420 408 410 8299;8300;8301;8302;8303;8304;8305;8306;8307;8308;8309;8310;8311;8312;8313;8314;8315;8316;8317;8318;8319;8320;8321;8322;8323;8324;8325;8326;8327;8328;8329;8330;8331;8332;8333;8334;8335;8336;8337;8338;8339;8340;8341;8342;8343;8344;8345;8346;8347;8348;8349;8350;8351;8352;8353;8354;8355;8356;8357;8358;8359;8360;8361;8362 4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001;5002;5003;5004;5005;5006;5007;5008;5009;5010;5011;5012;5013;5014;5015;5016;5017;5018;5019;5020;5021;5022;5023;5024;5025;5026;5027;5028;5029 4998 39 ADNDLVDMIK Unmodified 1132.5434 0.54342452 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 37.72 36.147 2 0.0022544 17569 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 79.974 70.386 357200000 87340000 0 76221000 0 0 0 0 44608000 0 0 0 0 41124000 37241000 34842000 0 0 0 0 0 35829000 0 0 0 421 1244 411 8363;8364;8365;8366;8367;8368;8369;8370;8371 5030;5031;5032;5033;5034;5035 5032 6 ADNSPVTAADIAAHTVIMDGLR Unmodified 2237.111 0.11103037 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 1 1 2 49.73 48.32 2;3 2.6769E-15 23551 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 144.92 141.39 810820000 138070000 127040000 130840000 2095500 1490000 1473100 68092000 66982000 64098000 0 0 0 37359000 28406000 38509000 0 0 0 37877000 31245000 37229000 0 0 0 422 1193 412 8372;8373;8374;8375;8376;8377;8378;8379;8380;8381;8382;8383;8384;8385;8386;8387;8388;8389;8390;8391;8392;8393;8394 5036;5037;5038;5039;5040;5041;5042;5043;5044;5045;5046;5047;5048 5039 12 ADNVVLENGGR Unmodified 1142.568 0.56799978 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 15.751 16.599 2 2.0871E-05 5471 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 135.43 131.86 101260000 6793300 5969000 8084000 0 0 0 0 1719900 0 0 0 0 20438000 20383000 17628000 0 0 0 6284700 6492000 7470900 0 0 0 423 1513 413 8395;8396;8397;8398;8399;8400;8401;8402;8403;8404 5049;5050;5051 5049 3 ADPEWAK Unmodified 815.38137 0.38136821 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.327 15.038 2 0.022682 4889 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 74.439 74.439 996560000 85058000 71045000 72106000 643470 0 501520 83412000 81434000 81409000 0 655180 0 80252000 72943000 71597000 0 0 0 96386000 99201000 99036000 878740 0 0 424 170 414 8405;8406;8407;8408;8409;8410;8411;8412;8413;8414;8415;8416;8417;8418;8419;8420 5052;5053;5054;5055;5056;5057;5058;5059;5060;5061;5062 5053 11 ADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHR Unmodified 3748.7501 0.75014619 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.757 52.478 3 3.0169E-14 25748 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.48 122.82 486990000 71977000 0 51259000 5229900 0 4921300 58618000 60708000 54500000 3615700 5684200 6788100 0 38970000 0 3903900 1614500 0 60496000 0 49563000 4353700 4789200 0 425 388 415 8421;8422;8423;8424;8425;8426;8427;8428;8429;8430;8431;8432;8433;8434;8435;8436;8437 5063;5064;5065;5066;5067;5068;5069 5068 7 ADQEGWNPGFTEK Unmodified 1477.6474 0.64737232 1678 P64490 yoaC Uncharacterized protein YoaC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.397 27.149 2 2.6472E-12 12746 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 187.76 187.45 365590000 16266000 14179000 9581000 0 0 0 63547000 58060000 59267000 0 0 0 24839000 29316000 26543000 0 0 0 20272000 25232000 18491000 0 0 0 426 1678 416 8438;8439;8440;8441;8442;8443;8444;8445;8446;8447;8448;8449 5070;5071;5072;5073;5074;5075;5076;5077;5078;5079;5080 5071 11 ADQINEAYER Unmodified 1207.5469 0.54692999 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 14.982 15.825 2 1.9826E-12 5337 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 214.83 209.87 1026700000 318150000 403530000 302950000 716330 761120 610130 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 427 1762 417 8450;8451;8452;8453;8454;8455 5081;5082;5083 5081 3 ADQIPVLK Unmodified 882.51747 0.51746776 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.787 23.794 2 0.0078415 10850 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.671 66.377 366310000 31566000 38729000 31821000 0 242480 0 28822000 29589000 26861000 0 0 0 24439000 23627000 19531000 0 0 0 35583000 37682000 37818000 0 0 0 428 1221 418 8456;8457;8458;8459;8460;8461;8462;8463;8464;8465;8466;8467;8468 5084;5085;5086;5087;5088;5089;5090;5091;5092;5093;5094;5095 5085 12 ADQIQWSAGIEPGDPR Unmodified 1738.8275 0.82746195 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 2 2 2 2 3 2 3 2 2 2 2 2 37.165 35.604 2;3 4.3333E-31 16621 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 242.94 231.4 5945100000 1586900000 1441900000 1379800000 3949700 3599100 3854600 313440000 281740000 277310000 0 0 0 96026000 90169000 88324000 0 0 0 125180000 125030000 127910000 0 0 0 429 517 419 8469;8470;8471;8472;8473;8474;8475;8476;8477;8478;8479;8480;8481;8482;8483;8484;8485;8486;8487;8488;8489;8490;8491;8492;8493;8494;8495;8496;8497;8498;8499;8500;8501;8502;8503;8504;8505;8506 5096;5097;5098;5099;5100;5101;5102;5103;5104;5105;5106;5107;5108;5109;5110;5111;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134;5135;5136;5137;5138;5139 5127 44 ADQVLQDK Unmodified 915.46616 0.46616048 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.088 12.792 2 0.00061965 3568 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.27 94.778 1797900000 80053000 6091000 90977000 1738000 1137800 1211900 221210000 229140000 236950000 2953900 3500600 3902800 150750000 131430000 128490000 0 0 0 184930000 172120000 145900000 2043500 1834000 1539100 430 1437 420 8507;8508;8509;8510;8511;8512;8513;8514;8515;8516;8517;8518;8519;8520;8521;8522;8523;8524;8525;8526;8527 5140;5141;5142;5143;5144;5145;5146;5147;5148;5149 5145 10 ADQYLDALEQEIVHR Unmodified 1798.885 0.88497683 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 46.429 44.939 3 5.1097E-07 21027 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 117.2 115.84 374120000 48265000 46431000 41031000 1166600 0 0 32904000 22833000 25477000 0 0 0 25505000 18799000 20893000 0 0 0 31978000 31422000 27417000 0 0 0 431 1387 421 8528;8529;8530;8531;8532;8533;8534;8535;8536;8537;8538;8539;8540 5150;5151;5152;5153;5154;5155;5156;5157;5158;5159;5160;5161 5160 12 ADREEAR Unmodified 845.39914 0.39914354 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.016 5.8975 2 0.0035666 1114 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.89 26.995 377460000 35227000 43022000 30311000 310100 256630 284900 0 0 454750 0 0 0 78288000 10363000 0 0 0 0 83274000 82669000 13004000 0 0 0 432 297 422 8541;8542;8543;8544;8545;8546;8547;8548;8549;8550;8551;8552 5162;5163;5164;5165;5166 5164 5 ADRQPEFTQIDVETSFMTAPQVR Unmodified 2665.2806 0.2806149 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.268 43.853 3 9.8654E-22 21381 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.46 156.31 249520000 13971000 9832000 7819300 0 0 0 27752000 23201000 23637000 0 0 0 17223000 21563000 18874000 0 0 0 32902000 27227000 25515000 0 0 0 433 1189 423 8553;8554;8555;8556;8557;8558;8559;8560;8561;8562;8563;8564 5167;5168;5169;5170;5171;5172;5173 5167 7 ADSADAEK Unmodified 805.34538 0.34537664 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 4.7572 5.6064 2 5.1984E-05 907 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 170.66 163.25 4109000000 801980000 844390000 616890000 0 0 0 13418000 14146000 14847000 0 0 0 239580000 200150000 210480000 0 0 0 389300000 367750000 396060000 0 0 0 434 179 424 8565;8566;8567;8568;8569;8570;8571;8572;8573;8574;8575;8576 5174;5175;5176;5177;5178;5179;5180;5181;5182;5183;5184;5185;5186;5187;5188;5189;5190;5191;5192;5193 5180 20 ADSAEVSMIPSTK Oxidation (M) 1350.6337 0.63369609 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 1 0 By MS/MS By matching By matching By MS/MS 1 1 1 2 18.064 18.567 2 2.1768E-05 6727 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.84 106.92 15629000 0 0 0 0 0 0 3251900 3357600 0 0 0 0 0 0 0 0 0 0 2147200 6872800 0 0 0 0 435 412 425 8577;8578;8579;8580;8581 5194;5195;5196 5195 198 3 ADSAEVSMIPSTK Unmodified 1334.6388 0.63878147 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.338 24.257 2 7.2892E-06 10892 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 145.55 140.94 3458100000 255630000 218740000 213830000 0 0 0 353320000 344710000 345580000 0 0 0 304690000 252740000 229150000 0 0 0 309000000 335330000 295350000 0 0 0 436 412 425 8582;8583;8584;8585;8586;8587;8588;8589;8590;8591;8592;8593 5197;5198;5199;5200;5201;5202;5203;5204;5205 5200 9 ADSQPLSGAPEGAEYLR Unmodified 1759.8377 0.83769228 98 P04968 ilvA L-threonine dehydratase biosynthetic IlvA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.79 30.274 2 1.5953E-08 14148 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 133.15 120.19 56942000 10688000 10109000 7864000 0 0 0 0 0 3430400 7959000 1613100 0 0 2282800 2496500 0 0 0 0 3476800 2925500 0 0 4096600 437 98 426 8594;8595;8596;8597;8598;8599;8600;8601;8602;8603;8604 5206 5206 1 ADSVASALITQGVDASR Unmodified 1659.8428 0.84277766 1484 P37665 yiaD Probable lipoprotein YiaD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 2 1 2 2 2 2 1 2 39.536 37.869 2;3 4.0638E-24 18429 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 207.12 192.96 76996000 3247700 0 0 886770 540940 422340 0 0 2519800 0 0 0 6230900 3920500 8689700 0 0 0 15566000 13999000 16459000 0 1289500 3223600 438 1484 427 8605;8606;8607;8608;8609;8610;8611;8612;8613;8614;8615;8616;8617;8618;8619;8620;8621;8622;8623 5207;5208 5207 1 ADTGFGVMTEEELK Unmodified 1525.697 0.69702463 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.072 35.23 2 2.0829E-19 17269 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 204.17 193.94 287760000 25463000 21142000 19544000 0 0 0 22173000 21207000 23605000 3090200 2494200 2355900 21209000 21975000 23164000 0 0 0 25398000 29693000 25248000 0 0 0 439 1880 428 8624;8625;8626;8627;8628;8629;8630;8631;8632;8633;8634;8635;8636;8637;8638 5209;5210;5211;5212;5213;5214;5215;5216;5217;5218;5219;5220;5221;5222 5213 14 ADTHHAQGPGK Unmodified 1117.5265 0.52646932 1690 P64585 yqjE Inner membrane protein YqjE yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 2 2 2 1 1 1 5.8905 6.5676 2;3 0.00026366 1484 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 96.342 84.621 248560000 7542300 6768300 5842800 5848200 5522800 6364900 12408000 10893000 11895000 22891000 20339000 33410000 10773000 10027000 9332400 757870 767680 0 20048000 16851000 17826000 4345600 3839900 4261300 440 1690 429 8639;8640;8641;8642;8643;8644;8645;8646;8647;8648;8649;8650;8651;8652;8653;8654;8655;8656;8657;8658;8659;8660;8661;8662;8663;8664;8665;8666;8667;8668;8669;8670;8671;8672;8673 5223;5224;5225;5226;5227;5228;5229;5230;5231;5232;5233;5234;5235;5236;5237;5238;5239 5224 16 ADTLAILR Unmodified 871.51272 0.51271674 960 P0AFQ7 ycfH Uncharacterized deoxyribonuclease YcfH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 31.121 29.731 2 0.0003704 13849 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143 105.36 216710000 27780000 22611000 23457000 0 0 0 9309200 11047000 11910000 0 0 0 15321000 15130000 14866000 0 0 0 24172000 17925000 22858000 0 320530 0 441 960 430 8674;8675;8676;8677;8678;8679;8680;8681;8682;8683;8684;8685;8686 5240;5241;5242;5243;5244;5245 5243 6 ADVAMTGEITLR Unmodified 1275.6493 0.64928657 536 P0A9M0 lon Lon protease yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 2 3 2 1 1 33.695 32.572 2 0.00063167 11617 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 82.417 77.451 49685000 0 0 0 0 0 0 10385000 0 3520800 2454500 0 1557600 0 5604900 2020400 9504700 4340900 5650900 0 0 0 0 1955800 2689000 442 536 431 8687;8688;8689;8690;8691;8692;8693;8694;8695;8696;8697;8698;8699;8700;8701;8702;8703 5246;5247;5248;5249;5250;5251;5252 5246 6 ADVAPSNLAIVGR Unmodified 1281.7041 0.70409934 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 1 31.469 30.072 2;3 4.4531E-07 14171 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 147.75 130.73 6369200000 449840000 374380000 385830000 3576700 4169100 3332800 706050000 642940000 667190000 6128100 3983000 6236900 467820000 439860000 504510000 3498000 2330500 2588900 559830000 573820000 557530000 3764900 0 0 443 876 432 8704;8705;8706;8707;8708;8709;8710;8711;8712;8713;8714;8715;8716;8717;8718;8719;8720;8721;8722;8723;8724;8725;8726;8727;8728;8729;8730;8731;8732;8733;8734;8735;8736 5253;5254;5255;5256;5257;5258;5259;5260;5261;5262;5263;5264;5265;5266;5267;5268;5269;5270;5271;5272 5268 18 ADVDKLPIPDPEDELGYVMNAVR Unmodified 2555.2578 0.25775419 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 54.705 53.254 3 6.9899E-10 25197 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 112.57 108.91 305510000 43761000 0 0 0 0 0 0 36512000 0 2251800 0 0 40913000 47177000 39837000 0 0 0 50858000 0 44202000 0 0 0 444 1332 433 8737;8738;8739;8740;8741;8742;8743;8744 5273;5274;5275;5276 5276 4 ADVGFLCNMLER Unmodified 1423.6588 0.6588054 1997 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 2 1 1 28.172 27.114 2 0.017231 11968 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 57.859 31.416 215480000 48269000 0 0 0 0 0 0 0 0 0 0 0 31225000 55096000 31068000 0 0 0 0 0 49817000 0 0 0 + 445 1997 434 8745;8746;8747;8748;8749;8750 5277 5277 1 ADVLAKPAVEAVENGDIQFVPK Unmodified 2309.2267 0.22671206 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.759 40.976 3 1.4062E-06 19143 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 93.73 90.268 561870000 50377000 48370000 45756000 0 1122800 1329400 41512000 42224000 39614000 2026400 0 0 40569000 34969000 33079000 0 0 0 62474000 54716000 63731000 0 0 0 446 158 435 8751;8752;8753;8754;8755;8756;8757;8758;8759;8760;8761;8762;8763;8764;8765 5278;5279;5280;5281;5282;5283 5283 6 ADVLPLDSNHVNTEEAR Unmodified 1878.9072 0.90716883 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 25.071 24.066 2;3 3.0739E-25 10918 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 224.42 218.19 6912300000 385690000 367640000 324860000 0 0 0 609380000 647100000 625830000 2978500 3694500 2902300 666030000 546680000 548580000 1610000 1960500 0 707160000 741080000 729120000 0 0 0 447 1189 436 8766;8767;8768;8769;8770;8771;8772;8773;8774;8775;8776;8777;8778;8779;8780;8781;8782;8783;8784;8785;8786;8787;8788;8789;8790;8791;8792;8793;8794 5284;5285;5286;5287;5288;5289;5290;5291;5292;5293;5294;5295;5296;5297;5298;5299;5300;5301;5302;5303;5304;5305;5306;5307 5287 24 ADVNQVVDGDALQLAGR Unmodified 1739.8802 0.8802258 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.013 38.347 2 1.283E-18 18024 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 182.07 170.54 143040000 13394000 11907000 11851000 0 0 0 9942100 9460100 8975700 0 0 0 10079000 12874000 9728500 0 0 0 13234000 15381000 16213000 0 0 0 448 1979 437 8795;8796;8797;8798;8799;8800;8801;8802;8803;8804;8805;8806 5308;5309;5310;5311;5312;5313 5311 6 ADVPTVSLVGYTNAGK Unmodified 1590.8253 0.82533668 1255 P25519 hflX GTPase HflX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 37.603 36.164 2 0.043812 17432 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.463 45.237 41413000 16024000 12657000 12732000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 449 1255 438 8807;8808;8809 5314;5315;5316 5315 0 ADVQGSVEAISDSLLK Unmodified 1630.8414 0.84138068 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 1 1 1 1 1 48.652 47.48 2;3 1.279E-13 18355 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 169.62 147.09 1045400000 118290000 135360000 104340000 8892900 8038900 6862500 48754000 52442000 48938000 11781000 14102000 12775000 70222000 71934000 65093000 28021000 43452000 41389000 46507000 46951000 41731000 7271200 5121200 7102300 450 297 439 8810;8811;8812;8813;8814;8815;8816;8817;8818;8819;8820;8821;8822;8823;8824;8825;8826;8827;8828;8829;8830;8831;8832;8833;8834;8835;8836;8837;8838;8839;8840;8841;8842;8843;8844;8845;8846;8847 5317;5318;5319;5320;5321;5322;5323;5324;5325;5326;5327;5328;5329;5330;5331;5332;5333;5334;5335;5336;5337;5338;5339;5340;5341;5342;5343;5344;5345;5346 5317 29 ADVSISVTELGSLLDHTGPHLEAEEYIAR Unmodified 3121.5568 0.55677298 1602 P52095 ldcC Lysine decarboxylase, constitutive yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 52.76 51.4 4 0.025146 25554 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 53.578 51.573 64844000 8373700 7979800 5615300 0 0 0 13627000 14297000 11069000 0 0 0 3882600 0 0 0 0 0 0 0 0 0 0 0 451 1602 440 8848;8849;8850;8851;8852;8853;8854 5347;5348 5347 0 ADVSLILR Unmodified 885.52837 0.5283668 110 P05458 ptrA Protease 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.569 32.129 2 0.00029541 15283 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 147.34 112.23 127280000 11116000 11083000 9312000 0 0 0 12200000 11762000 14695000 0 0 0 8462900 7325400 7075600 0 0 0 10632000 12401000 11218000 0 0 0 452 110 441 8855;8856;8857;8858;8859;8860;8861;8862;8863;8864;8865;8866 5349;5350;5351;5352;5353;5354;5355;5356;5357;5358;5359 5353 11 ADVTLGGGAK Unmodified 887.47125 0.47124585 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.64 14.188 2 0.056 3224 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 47.853 32.483 2153500000 0 0 0 0 3190300 3312800 200350000 191120000 194110000 3103400 2768400 2727300 272330000 283060000 237960000 7269300 5133000 5438100 257410000 232650000 234860000 6140300 5401700 5119200 453 38 442 8867;8868;8869;8870;8871;8872;8873;8874;8875;8876;8877;8878;8879;8880;8881;8882;8883;8884;8885;8886 5360 5360 1 ADVTSLGVK Unmodified 888.49165 0.49164694 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 19.344 19.822 2 0.0037605 7725 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 80.438 59.739 200980000 0 0 0 0 0 0 44634000 41107000 46312000 0 0 0 24538000 25822000 18565000 0 0 0 0 0 0 0 0 0 454 1961 443 8887;8888;8889;8890;8891;8892 5361;5362 5362 2 ADVVLGLDNNLLDAASK Unmodified 1726.9101 0.91012895 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 50.021 48.609 2 1.4772E-08 23551 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 141.32 127.65 234560000 0 6063100 4823900 0 0 0 22531000 18405000 16876000 0 0 0 22937000 16445000 17694000 0 0 0 36741000 36850000 35192000 0 0 0 455 1371 444 8893;8894;8895;8896;8897;8898;8899;8900;8901;8902;8903 5363;5364;5365;5366 5364 4 ADVVTYNQVTDVQILHDK Unmodified 2057.0429 0.042934032 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 35.224 33.761 2;3 1.1195E-29 16549 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 265.03 259.95 2412500000 211480000 195110000 158140000 586440 0 0 230390000 214690000 211140000 0 0 0 174670000 187400000 172180000 0 0 0 217870000 234760000 204090000 0 0 0 456 1132 445 8904;8905;8906;8907;8908;8909;8910;8911;8912;8913;8914;8915;8916;8917;8918;8919;8920;8921;8922;8923;8924;8925;8926;8927;8928 5367;5368;5369;5370;5371;5372;5373;5374;5375;5376;5377;5378;5379;5380;5381;5382;5383;5384;5385;5386;5387;5388;5389;5390 5368 24 ADVVVANILAGPLR Unmodified 1406.8245 0.82454882 457 P0A8T1 prmA Ribosomal protein L11 methyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.593 48.203 2 1.6546E-19 23811 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 208.63 200.4 353860000 29158000 21483000 20657000 0 0 0 39896000 32783000 33162000 0 0 0 29044000 26323000 26099000 0 0 0 31546000 28546000 35162000 0 0 0 457 457 446 8929;8930;8931;8932;8933;8934;8935;8936;8937;8938;8939;8940 5391;5392;5393;5394;5395;5396;5397;5398;5399;5400 5393 10 ADVVVVSIFVNPMQFDRPEDLAR Unmodified 2616.337 0.33700756 1375 P31663 panC Pantothenate synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.461 53.004 3 2.3131E-22 26301 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.64 127.37 614940000 76735000 93888000 79104000 0 0 0 45780000 45553000 36046000 0 0 0 0 37809000 41068000 0 0 0 58583000 51161000 49213000 0 0 0 458 1375 447 8941;8942;8943;8944;8945;8946;8947;8948;8949;8950;8951 5401;5402;5403;5404;5405;5406;5407;5408;5409 5406 9 ADWPTVTVVSEPK Unmodified 1427.7296 0.72964538 1902 P77376 ydgJ Uncharacterized oxidoreductase YdgJ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 37.776 36.083 2 0.029265 17808 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 55.401 47.834 87371000 11096000 11094000 0 0 0 0 6216500 7017200 5419200 0 0 0 8760500 6893100 6491300 0 0 0 9126000 7760100 7497500 0 0 0 459 1902 448 8952;8953;8954;8955;8956;8957;8958;8959;8960;8961;8962 5410 5410 0 ADYAAAAAR Unmodified 878.42463 0.42463001 1523 P39315 qorB Quinone oxidoreductase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.108 12.941 2 0.0003541 3677 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.14 81.071 138240000 16237000 16420000 12186000 0 0 0 14562000 13978000 17757000 0 0 0 7002100 4887900 7103700 0 0 0 9334200 9715600 9058500 0 0 0 460 1523 449 8963;8964;8965;8966;8967;8968;8969;8970;8971;8972;8973;8974 5411;5412;5413;5414;5415 5414 4 ADYADSLTENGTHGSDSVESAAR Unmodified 2352.0102 0.010189933 315 P0A763 ndk Nucleoside diphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.794 22.265 2;3 4.6045E-103 9324 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 420.84 420.84 2930100000 453160000 385960000 448430000 0 0 0 140360000 152870000 160950000 0 0 0 112960000 85604000 74101000 0 0 0 288500000 321030000 306180000 0 0 0 461 315 450 8975;8976;8977;8978;8979;8980;8981;8982;8983;8984;8985;8986;8987;8988;8989;8990;8991;8992;8993;8994;8995;8996;8997;8998 5416;5417;5418;5419;5420;5421;5422;5423;5424;5425;5426;5427;5428;5429;5430;5431;5432;5433;5434;5435 5432 20 ADYLNWLR Unmodified 1049.5294 0.52942943 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 45.141 43.72 2 0.00037014 20397 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 143.02 128.24 251880000 16660000 13417000 15454000 0 0 271840 21211000 23054000 24282000 0 0 0 21102000 19379000 16269000 0 0 0 30687000 24198000 25897000 0 0 0 462 1148 451 8999;9000;9001;9002;9003;9004;9005;9006;9007;9008;9009;9010;9011 5436;5437;5438;5439;5440;5441;5442;5443;5444;5445;5446;5447 5446 12 ADYVSITDDEALEAFK Unmodified 1785.8309 0.83087557 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.407 47.052 2 5.9914E-07 22811 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.08 127.63 279910000 60581000 57107000 47567000 0 1705900 2052000 13855000 8442100 10124000 0 0 2916200 12335000 10116000 11139000 0 0 0 13996000 13915000 14060000 0 0 0 463 405 452 9012;9013;9014;9015;9016;9017;9018;9019;9020;9021;9022;9023;9024;9025;9026 5448;5449;5450;5451;5452;5453;5454;5455;5456;5457;5458 5455 11 AEAAEINLR Unmodified 985.51926 0.51925868 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.275 19.748 2 2.6786E-05 7803 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 155 110.23 3446700000 228910000 206180000 194770000 18781000 15619000 16593000 376890000 402250000 326940000 0 0 0 240490000 222060000 198950000 5105900 3708900 3666600 315690000 306710000 363400000 0 0 0 464 1409 453 9027;9028;9029;9030;9031;9032;9033;9034;9035;9036;9037;9038;9039;9040;9041;9042;9043;9044 5459;5460;5461;5462;5463;5464;5465;5466;5467;5468;5469;5470;5471;5472;5473 5459 15 AEAAELEVDELK Unmodified 1315.6507 0.65072636 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.484 28.88 2 2.8159E-06 13442 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.43 132.05 441420000 33298000 31246000 24195000 0 0 0 39271000 38024000 33554000 3143900 2647400 2667000 29847000 30470000 31952000 0 0 0 42737000 47667000 43144000 2320700 2767200 2472600 465 1197 454 9045;9046;9047;9048;9049;9050;9051;9052;9053;9054;9055;9056;9057;9058;9059;9060;9061;9062 5474;5475;5476;5477;5478;5479;5480;5481;5482 5478 9 AEAAPAATGGGIPGMLPWPK Unmodified 1890.9662 0.96620404 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 2 48.784 47.542 2;3;4 1.2981E-14 23079 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 194.3 190.43 14639000000 341980000 348900000 294670000 1558200000 1606400000 1711300000 388490000 383180000 386990000 165880000 190300000 174930000 240620000 231780000 216490000 73450000 39919000 43380000 438910000 436120000 395130000 1709800000 1630100000 1632400000 466 133 455 9063;9064;9065;9066;9067;9068;9069;9070;9071;9072;9073;9074;9075;9076;9077;9078;9079;9080;9081;9082;9083;9084;9085;9086;9087;9088;9089;9090;9091;9092;9093;9094;9095;9096;9097;9098;9099;9100;9101;9102;9103;9104;9105;9106;9107;9108;9109;9110;9111;9112;9113;9114;9115 5483;5484;5485;5486;5487;5488;5489;5490;5491;5492;5493;5494;5495;5496;5497;5498;5499;5500;5501;5502;5503;5504;5505;5506;5507;5508;5509;5510;5511;5512;5513;5514;5515;5516;5517;5518;5519;5520;5521;5522;5523;5524;5525;5526;5527;5528;5529;5530;5531;5532;5533;5534;5535;5536;5537;5538 5509 53 AEAAPAATGGGIPGMLPWPK Oxidation (M) 1906.9611 0.96111866 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 4 5 5 2 2 1 1 1 1 1 1 1 2 5 5 4 44.294 42.502 2;3 4.3455E-11 14782 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 134.04 128.32 372190000 0 0 0 55652000 50514000 67590000 18307000 0 17999000 4534300 2318200 962100 0 1787200 5334200 0 0 0 8616000 4373700 11902000 47441000 42437000 32425000 467 133 455 9116;9117;9118;9119;9120;9121;9122;9123;9124;9125;9126;9127;9128;9129;9130;9131;9132;9133;9134;9135;9136;9137;9138;9139;9140;9141;9142;9143;9144;9145;9146;9147;9148;9149;9150;9151;9152;9153;9154;9155;9156 5539;5540;5541;5542;5543;5544;5545;5546;5547;5548;5549;5550;5551;5552;5553;5554;5555;5556;5557;5558;5559;5560;5561;5562;5563;5564;5565;5566;5567;5568;5569;5570;5571;5572;5573 5571 38 35 AEADISEYITK Unmodified 1238.603 0.60304789 1928 P77695 gnsB Protein GnsB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.103 29.746 2 0.00070965 14088 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 85.958 84.15 682710000 102300000 75786000 78622000 0 0 0 62092000 58282000 61174000 0 0 0 31846000 31983000 27068000 0 0 0 48321000 50957000 54277000 0 0 0 468 1928 456 9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167;9168 5574;5575;5576;5577;5578;5579 5576 4 AEADKAGLSPTEFTAQALK Unmodified 1946.9949 0.99492121 1157 P19319 narZ Respiratory nitrate reductase 2 alpha chain yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 33.549 31.458 3 0.12458 12511 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 25.186 19.064 7638300 0 0 0 778790 0 1135500 0 0 0 2064500 1970200 1689300 0 0 0 0 0 0 0 0 0 0 0 0 469 1157 457 9169;9170;9171;9172;9173 5580;5581 5580 2 AEADLAVALEENNIPFEYQLGEGAFYGPK Unmodified 3154.5135 0.51351118 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.026 53.553 3 3.0976E-16 25564 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 143.32 141.16 518660000 44415000 39155000 38503000 0 0 0 38142000 34419000 40034000 0 0 0 45938000 42673000 44759000 0 0 0 46289000 54827000 49510000 0 0 0 470 445 458 9174;9175;9176;9177;9178;9179;9180;9181;9182;9183;9184;9185 5582;5583;5584;5585;5586;5587 5586 6 AEAEQER Unmodified 831.37226 0.37226009 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.8866 7.4798 2 0.00047536 1656 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 153.15 93.539 794710000 0 0 0 869440 1321500 1099500 78380000 64155000 55246000 6300700 5010600 4737100 75935000 69452000 73120000 943500 1094000 932210 112870000 111550000 117370000 5041800 4614200 4669900 471 642 459 9186;9187;9188;9189;9190;9191;9192;9193;9194;9195;9196;9197;9198;9199;9200;9201;9202;9203;9204;9205;9206 5588;5589;5590;5591;5592;5593;5594 5592 7 AEAEQTLAALTEK Unmodified 1373.7038 0.70382456 766 P0AD33 yfcZ UPF0381 protein YfcZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 31.742 30.29 2;3 4.8035E-07 11621 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 172.11 150.52 16838000000 484380000 491920000 465800000 9031800 8664500 8076900 2616900000 2566900000 2473300000 76400000 64089000 62755000 1392600000 1421800000 1437300000 9624000 4884100 8543300 1002500000 1107400000 1052400000 23436000 23068000 25743000 472 766 460 9207;9208;9209;9210;9211;9212;9213;9214;9215;9216;9217;9218;9219;9220;9221;9222;9223;9224;9225;9226;9227;9228;9229;9230;9231;9232;9233;9234;9235;9236;9237;9238;9239;9240;9241;9242;9243;9244;9245;9246;9247;9248;9249;9250;9251;9252 5595;5596;5597;5598;5599;5600;5601;5602;5603;5604;5605;5606;5607;5608;5609;5610;5611;5612;5613;5614;5615;5616;5617;5618;5619;5620;5621;5622;5623;5624;5625;5626;5627;5628;5629;5630;5631;5632;5633 5599 39 AEAESLYQSK Unmodified 1124.535 0.53496832 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.994 15.308 2 1.8577E-05 3941 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 150.17 139.76 380420000 0 0 0 7150000 7552500 7620500 0 0 0 70352000 71752000 68747000 0 0 0 13108000 10362000 13026000 0 0 0 37789000 36029000 36931000 + 473 11 461 9253;9254;9255;9256;9257;9258;9259;9260;9261;9262;9263;9264 5634;5635;5636;5637;5638;5639;5640;5641;5642;5643 5636 10 AEAESLYQSKYEELQITAGR Unmodified 2285.1176 0.11755554 11 CON__P04264 yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 34.39 31.973 3 8.6057E-07 12699 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 90.968 86.211 22824000 0 0 0 0 0 0 0 0 0 9335900 6945400 6543200 0 0 0 0 0 0 0 0 0 0 0 0 + 474 11 462 9265;9266;9267 5644 5644 1 AEAFEESVR Unmodified 1036.4825 0.48253882 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.367 17.797 2 3.5972E-05 5234 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 152.63 142.49 624790000 83691000 81821000 72991000 29282000 26755000 30818000 33216000 35435000 34968000 10587000 9760700 7726300 28950000 27554000 26672000 1773600 1815900 2078500 34872000 29791000 0 4960900 4882300 4388600 475 1807 463 9268;9269;9270;9271;9272;9273;9274;9275;9276;9277;9278;9279;9280;9281;9282;9283;9284;9285;9286;9287;9288;9289;9290 5645;5646;5647;5648;5649;5650;5651;5652 5649 5 AEAFLNTELTWDGIQQPLLGHK Unmodified 2480.27 0.26997386 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 1 2 51.415 50.159 2;3 1.2419E-43 24833 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 317.55 298.72 2579800000 221270000 230080000 183700000 0 0 0 210610000 223080000 202740000 0 0 3299500 192010000 156650000 167480000 0 0 0 287600000 253900000 247340000 0 0 0 476 60 464 9291;9292;9293;9294;9295;9296;9297;9298;9299;9300;9301;9302;9303;9304;9305;9306;9307;9308;9309;9310;9311;9312;9313;9314 5653;5654;5655;5656;5657;5658;5659;5660;5661;5662;5663;5664;5665;5666;5667;5668 5654 16 AEAFVTMR Unmodified 923.45349 0.4534873 307 P0A738 moaC Cyclic pyranopterin monophosphate synthase accessory protein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 22.622 22.199 2 0.0030318 9503 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 95.531 80.755 160010000 31630000 29721000 23846000 0 0 0 0 0 0 0 0 0 20251000 0 0 0 0 0 16631000 18735000 19198000 0 0 0 477 307 465 9315;9316;9317;9318;9319;9320;9321 5669;5670;5671 5669 2 AEAGDVANAILDGTDAVMLSGESAK Unmodified 2404.1428 0.14278401 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 3 3 3 3 3 3 3 3 54.257 52.813 2;3;4 1.1131E-84 26076 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 314.85 296.75 7397800000 655940000 658140000 751190000 0 0 0 559550000 593480000 567200000 0 0 0 618350000 558230000 582970000 0 0 0 611730000 622650000 618370000 0 0 0 478 771 466 9322;9323;9324;9325;9326;9327;9328;9329;9330;9331;9332;9333;9334;9335;9336;9337;9338;9339;9340;9341;9342;9343;9344;9345;9346;9347;9348;9349;9350;9351;9352;9353;9354;9355;9356 5672;5673;5674;5675;5676;5677;5678;5679;5680;5681;5682;5683;5684;5685;5686;5687;5688;5689;5690;5691;5692;5693;5694 5675 23 AEAGIVISASHNPFYDNGIK Unmodified 2102.0433 0.043268383 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.684 35.806 3 2.3754E-18 17281 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 167.92 158.45 387290000 38529000 31763000 34668000 655380 644050 0 31076000 31994000 26770000 1695000 1575500 1594700 31190000 36042000 25231000 0 0 0 50825000 40225000 0 1123200 0 1691600 479 1360 467 9357;9358;9359;9360;9361;9362;9363;9364;9365;9366;9367;9368;9369;9370;9371;9372;9373;9374 5695;5696;5697;5698;5699;5700;5701;5702 5697 8 AEAIHYIGDLVQR Unmodified 1483.7783 0.77832691 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 10 11 11 2 2 2 20 19 20 3 3 2 11 13 11 34.009 32.78 1;2;3;4 8.083E-40 10636 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 279.3 226.51 115580000000 1174400000 1217500000 1087400000 84220000 72738000 79630000 910580000 951040000 873660000 8154800000 7423400000 7516600000 878650000 836460000 890680000 18816000000 17113000000 18123000000 1202500000 1170500000 1173300000 8438600000 8171500000 9220900000 480 383 468 9375;9376;9377;9378;9379;9380;9381;9382;9383;9384;9385;9386;9387;9388;9389;9390;9391;9392;9393;9394;9395;9396;9397;9398;9399;9400;9401;9402;9403;9404;9405;9406;9407;9408;9409;9410;9411;9412;9413;9414;9415;9416;9417;9418;9419;9420;9421;9422;9423;9424;9425;9426;9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437;9438;9439;9440;9441;9442;9443;9444;9445;9446;9447;9448;9449;9450;9451;9452;9453;9454;9455;9456;9457;9458;9459;9460;9461;9462;9463;9464;9465;9466;9467;9468;9469;9470;9471;9472;9473;9474;9475;9476;9477;9478;9479;9480;9481;9482;9483;9484;9485;9486;9487;9488;9489;9490;9491;9492;9493;9494;9495;9496;9497;9498;9499;9500;9501;9502;9503;9504;9505;9506;9507;9508;9509;9510;9511;9512;9513;9514;9515;9516;9517;9518;9519;9520;9521;9522;9523;9524;9525;9526;9527;9528;9529;9530;9531;9532 5703;5704;5705;5706;5707;5708;5709;5710;5711;5712;5713;5714;5715;5716;5717;5718;5719;5720;5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731;5732;5733;5734;5735;5736;5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757;5758;5759;5760;5761;5762;5763;5764;5765;5766;5767;5768;5769;5770;5771;5772;5773;5774;5775;5776;5777;5778;5779;5780;5781;5782;5783;5784;5785;5786;5787;5788;5789;5790;5791;5792;5793;5794;5795;5796;5797;5798;5799;5800;5801;5802;5803;5804;5805;5806;5807;5808;5809;5810;5811;5812;5813;5814;5815;5816;5817;5818;5819;5820;5821;5822;5823;5824;5825;5826;5827;5828;5829;5830;5831;5832;5833;5834;5835;5836;5837;5838;5839;5840;5841;5842;5843;5844;5845;5846;5847;5848;5849;5850;5851;5852;5853;5854;5855;5856;5857;5858;5859;5860;5861;5862;5863;5864;5865;5866;5867;5868;5869;5870;5871 5714 164 AEALAMGFTHAACGPFVR Unmodified 1904.9026 0.90255792 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.975 36.245 3 2.9773E-07 17390 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.836 95.766 575830000 59111000 57642000 0 2093600 1570200 2001900 39258000 0 40394000 0 0 0 58187000 54959000 53351000 0 0 0 67138000 62368000 66200000 4358600 3046600 4148300 481 1628 469 9533;9534;9535;9536;9537;9538;9539;9540;9541;9542;9543;9544;9545;9546;9547;9548;9549 5872;5873;5874;5875;5876;5877;5878;5879;5880;5881;5882;5883;5884;5885 5880 9 AEANPALHPGQSAAIYLK Unmodified 1849.9686 0.96864688 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 26.505 25.456 2;3 3.1459E-22 11685 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 230.86 229.35 6621000000 653230000 592660000 513080000 2894900 2655900 2700900 424320000 425620000 411980000 0 3362300 4040100 575670000 588870000 505460000 1599600 2135500 2034900 590070000 657010000 654270000 1985100 2491100 2819000 482 161 470 9550;9551;9552;9553;9554;9555;9556;9557;9558;9559;9560;9561;9562;9563;9564;9565;9566;9567;9568;9569;9570;9571;9572;9573;9574;9575;9576;9577;9578;9579;9580;9581;9582;9583;9584 5886;5887;5888;5889;5890;5891;5892;5893;5894;5895;5896;5897;5898;5899;5900;5901;5902;5903;5904;5905;5906;5907;5908;5909 5890 24 AEAPAAAPAAK Unmodified 966.51345 0.51344502 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 2 1 11.504 12.055 2 0.0015862 2498 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 78.334 57.814 36391000000 1013000000 983090000 973950000 4611400000 5032300000 4488100000 975890000 968950000 944830000 520760000 451310000 395800000 682950000 674570000 610360000 224610000 165580000 197760000 1284600000 1129400000 1039900000 2904500000 3020000000 3097600000 483 133 471 9585;9586;9587;9588;9589;9590;9591;9592;9593;9594;9595;9596;9597;9598;9599;9600;9601;9602;9603;9604;9605;9606;9607;9608;9609;9610;9611 5910;5911;5912;5913;5914;5915;5916;5917;5918;5919;5920;5921;5922;5923;5924;5925;5926;5927;5928;5929;5930;5931;5932;5933;5934;5935 5910 22 AEAQAVK Unmodified 715.38645 0.38645359 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.965 5.8514 2 0.0043665 1187 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 104.11 70.753 747590000 0 0 0 0 0 0 0 0 184840000 0 0 0 129610000 112620000 0 0 0 0 112120000 107600000 100820000 0 0 0 484 596 472 9612;9613;9614;9615;9616;9617;9618;9619;9620 5936;5937;5938;5939;5940;5941;5942;5943;5944 5941 9 AEAQIAK Unmodified 729.4021 0.40210366 1938 P77754 spy Spheroplast protein Y yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.804 18.42 1 0.13488 6328 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 76.847 18.16 2664200000 233670000 203200000 197940000 0 0 0 0 469450000 433060000 0 0 0 10792000 238170000 0 0 0 0 345150000 252940000 278330000 0 818900 676160 485 1938 473 9621;9622;9623;9624;9625;9626;9627;9628;9629;9630;9631;9632 5945 5945 0 AEAQVIIEQANK Unmodified 1312.6987 0.69867961 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 1 2 1 1 1 1 1 2 2 2 1 1 2 22.339 22.027 2;3 9.8744E-12 9120 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 187.97 183.95 2399900000 51048000 39552000 43634000 15429000 15346000 15894000 177900000 158750000 173590000 55946000 53949000 44534000 215970000 176590000 174450000 8436500 6761000 6079300 271800000 309890000 269260000 34423000 38066000 42586000 486 642 474 9633;9634;9635;9636;9637;9638;9639;9640;9641;9642;9643;9644;9645;9646;9647;9648;9649;9650;9651;9652;9653;9654;9655;9656;9657;9658;9659;9660;9661;9662;9663;9664;9665;9666 5946;5947;5948;5949;5950;5951;5952;5953;5954;5955;5956;5957;5958;5959;5960;5961;5962;5963;5964;5965;5966;5967;5968;5969;5970;5971;5972 5960 24 AEAQVIIEQANKR Unmodified 1468.7998 0.79979063 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 1 2 2 2 2 1 2 1 1 2 2 2 2 2 2 18.51 18.88 2;3 3.7074E-12 7079 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.96 176.53 624050000 7459100 5390400 7738300 9652300 9506900 10414000 47852000 47405000 34386000 29905000 23790000 23466000 44184000 37102000 44205000 0 4017700 2941800 63233000 69089000 49132000 18931000 18398000 15851000 487 642 475 9667;9668;9669;9670;9671;9672;9673;9674;9675;9676;9677;9678;9679;9680;9681;9682;9683;9684;9685;9686;9687;9688;9689;9690;9691;9692;9693;9694;9695;9696;9697;9698;9699;9700;9701;9702;9703;9704;9705 5973;5974;5975;5976;5977;5978;5979;5980;5981;5982;5983;5984;5985;5986;5987;5988;5989;5990;5991;5992;5993;5994;5995;5996;5997;5998;5999;6000;6001;6002 5992 29 AEARPIYDIANK Unmodified 1359.7147 0.71466402 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 19.611 20.112 2 0.002623 7697 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.499 59.293 35094000 8116200 4888200 4864200 0 0 0 3360200 0 5436600 0 0 0 2879500 2773700 0 0 0 0 0 2775600 0 0 0 0 488 184 476 9706;9707;9708;9709;9710;9711;9712;9713 6003;6004;6005;6006 6005 2 AEATILADIAHQFWHIPHEK Unmodified 2326.1859 0.1858503 1436 P34209 ydcF Protein YdcF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 48.993 47.64 4;5 1.8223E-05 23281 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 85.974 83.092 448560000 83889000 81894000 82816000 0 782500 846040 36104000 26030000 25745000 1050400 0 0 13860000 12194000 13691000 0 0 0 26603000 23492000 19561000 0 0 0 489 1436 477 9714;9715;9716;9717;9718;9719;9720;9721;9722;9723;9724;9725;9726;9727;9728;9729;9730;9731;9732;9733;9734;9735;9736;9737;9738;9739;9740 6007;6008;6009;6010;6011;6012;6013;6014 6009 8 AEAVCSQDAMDDIILASDVVMVAR Unmodified 2578.2077 0.20770923 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 2 2 2 55.213 53.849 2;3 1.0017E-40 26741 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 278.15 273.6 1967500000 96186000 122970000 105760000 0 6185700 4063300 202250000 172200000 175380000 5934400 0 5907800 204880000 207310000 189100000 0 1884900 2195900 173110000 151030000 141150000 0 0 0 490 1184 478 9741;9742;9743;9744;9745;9746;9747;9748;9749;9750;9751;9752;9753;9754;9755;9756;9757;9758;9759;9760;9761;9762;9763;9764;9765;9766;9767;9768;9769;9770 6015;6016;6017;6018;6019;6020;6021;6022;6023;6024;6025;6026;6027;6028;6029;6030;6031;6032;6033;6034;6035;6036;6037 6018 23 AEAVDYQK Unmodified 922.43961 0.43961137 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.516 12.399 2 0.00074805 3321 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.83 111.79 4506600000 401940000 300800000 285840000 2324700 2522200 2275700 420570000 402630000 393230000 0 0 0 411420000 354610000 359940000 0 0 0 400510000 385670000 382280000 0 0 0 491 333 479 9771;9772;9773;9774;9775;9776;9777;9778;9779;9780;9781;9782;9783;9784;9785 6038;6039;6040;6041;6042;6043;6044;6045;6046;6047;6048;6049 6042 12 AEAVITGVCETDFSGYPDCRDEFVK Unmodified 2864.2633 0.26330985 1939 P77756 queC 7-cyano-7-deazaguanine synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.482 38.816 3 1.2494E-15 19321 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.09 148.67 167220000 9736600 8746700 10420000 0 0 0 13347000 16793000 14989000 0 0 0 16230000 12330000 13434000 0 0 0 16669000 18111000 16414000 0 0 0 492 1939 480 9786;9787;9788;9789;9790;9791;9792;9793;9794;9795;9796;9797 6050;6051;6052;6053;6054;6055;6056 6050 7 AEAVSIMTDAVR Unmodified 1261.6336 0.63363651 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31.415 30.159 2 1.6031E-06 14545 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.86 77.167 381960000 31654000 35487000 28857000 1905400 0 0 32957000 38946000 38463000 2799200 0 1889300 0 27220000 28800000 1002900 595450 905730 36855000 38552000 35074000 0 0 0 493 1482 481 9798;9799;9800;9801;9802;9803;9804;9805;9806;9807;9808;9809;9810;9811;9812;9813;9814;9815 6057;6058;6059;6060 6058 4 AEAVTCAVMQAK Unmodified 1277.6108 0.61079258 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.661 21.084 2 2.6143E-06 8015 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 140.75 136.11 504380000 49948000 48502000 42011000 0 0 0 40520000 49365000 48040000 0 0 0 39932000 31877000 30190000 0 0 0 38732000 43070000 42198000 0 0 0 494 1192 482 9816;9817;9818;9819;9820;9821;9822;9823;9824;9825;9826;9827 6061;6062;6063;6064;6065;6066;6067;6068;6069;6070;6071 6069 11 AEAWATGLK Unmodified 945.49198 0.4919813 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.768 22.983 2 0.00077595 8136 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 101.54 95.439 149030000 8404900 15377000 12097000 0 0 0 4963100 3938600 4854300 9060100 9222400 8602800 4136600 5514000 3887500 1801200 1930300 1583500 9807600 11770000 11638000 7144500 5993600 7301900 495 75 483 9828;9829;9830;9831;9832;9833;9834;9835;9836;9837;9838;9839;9840;9841;9842;9843;9844;9845;9846;9847;9848 6072;6073;6074;6075;6076;6077;6078;6079;6080;6081 6074 5 AEDEAINVFAR Unmodified 1233.599 0.59896556 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 33.04 31.572 2 0.0030107 14284 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 67.563 47.776 94241000 11635000 10319000 0 0 0 0 13125000 8968200 10587000 0 0 0 0 7434700 7735300 0 0 0 0 10913000 13524000 0 0 0 496 1586 484 9849;9850;9851;9852;9853;9854;9855;9856;9857 6082 6082 0 AEDLSAHLMR Unmodified 1141.555 0.55499226 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 2 2 1 1 1 1 1 1 1 1 1 19.453 19.953 2;3 5.4471E-05 7676 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 163.2 148.34 351100000 104140000 115650000 83854000 2096900 2132900 2427800 4431800 3788900 3694500 0 0 0 4062200 3051600 3069000 0 0 0 5556200 5702500 7443000 0 0 0 497 1168 485 9858;9859;9860;9861;9862;9863;9864;9865;9866;9867;9868;9869;9870;9871;9872;9873;9874;9875;9876;9877 6083;6084;6085;6086;6087;6088;6089 6085 7 AEDMAAANAMASHLR Unmodified 1557.7028 0.70279548 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 25.207 24.204 2;3 6.5575E-15 10889 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 185.3 178.45 589740000 49185000 53982000 44533000 0 0 0 32572000 38962000 43276000 0 0 0 53939000 54361000 52728000 0 0 0 55689000 55303000 55212000 0 0 0 498 1188 486 9878;9879;9880;9881;9882;9883;9884;9885;9886;9887;9888;9889;9890;9891;9892;9893;9894;9895;9896;9897;9898;9899;9900 6090;6091;6092;6093;6094;6095 6090 6 AEDYFFNK Unmodified 1032.4553 0.45526144 1532 P39371 nanM N-acetylneuraminate epimerase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 28.664 27.418 2 0.0021654 12569 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.77 101.94 62539000 15912000 11690000 11446000 0 0 0 7156000 6174000 0 0 0 0 2304600 0 4389000 0 0 0 3467000 0 0 0 0 0 499 1532 487 9901;9902;9903;9904;9905;9906;9907;9908 6096;6097 6096 2 AEEAAEMAISSPLLEDIDLSGAR Unmodified 2387.1526 0.15262042 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.496 53.035 3 2.2859E-10 26005 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 100.76 92.767 360230000 56109000 62850000 44727000 2055900 1508500 0 34442000 36676000 0 4413700 4515400 5174900 0 0 0 0 0 0 0 52992000 54761000 0 0 0 500 502 488 9909;9910;9911;9912;9913;9914;9915;9916;9917;9918;9919;9920 6098 6098 1 AEEAGVDLVEISPNAEPPVCR Unmodified 2251.0791 0.079061542 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 42.255 40.434 2;3 2.792E-53 19727 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 335.77 333.28 1572700000 284960000 279020000 255830000 0 0 1515200 69200000 69784000 75720000 5263800 5443800 4038600 85612000 80571000 78347000 0 0 0 87094000 88797000 96206000 1428000 1436800 2440500 501 298 489 9921;9922;9923;9924;9925;9926;9927;9928;9929;9930;9931;9932;9933;9934;9935;9936;9937;9938;9939;9940;9941;9942;9943;9944;9945;9946;9947;9948;9949;9950;9951 6099;6100;6101;6102;6103;6104;6105;6106;6107;6108;6109;6110;6111;6112;6113;6114;6115;6116;6117;6118;6119;6120;6121;6122;6123 6115 25 AEEEADK Unmodified 790.33448 0.3344776 769 P0AD57 ispB Octaprenyl-diphosphate synthase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 4.7666 5.6109 2 0.015409 1222 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 81.784 14.749 29616000 0 7065300 0 0 0 0 0 0 0 0 0 0 0 6604800 4830800 0 0 0 0 6144900 4969900 0 0 0 502 769 490 9952;9953;9954;9955;9956 6124;6125 6125 2 AEEGIWMTDVPVPELGHNDLLIK Unmodified 2575.2992 0.29922507 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.182 51.743 3 7.071E-11 25351 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.48 131.6 1520700000 163530000 151840000 185220000 0 0 0 84190000 102820000 84157000 0 0 0 108650000 132590000 135520000 0 0 0 126540000 119970000 125640000 0 0 0 503 172 491 9957;9958;9959;9960;9961;9962;9963;9964;9965;9966;9967;9968 6126;6127;6128;6129;6130;6131;6132;6133;6134;6135;6136;6137 6129 12 AEEHISSSHGDVDYAQASAELAK Unmodified 2414.0986 0.09861101 236 P0A6E6 atpC ATP synthase epsilon chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 21.208 21.33 3;4 1.409E-35 8753 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 213.72 212.43 1383900000 44657000 35458000 34879000 1722700 3374600 3146400 135510000 114480000 142190000 7173600 13478000 13476000 132420000 115770000 125470000 0 0 0 143500000 159960000 135360000 10001000 4528500 7376400 504 236 492 9969;9970;9971;9972;9973;9974;9975;9976;9977;9978;9979;9980;9981;9982;9983;9984;9985;9986;9987;9988;9989;9990;9991;9992;9993;9994;9995;9996;9997;9998;9999;10000;10001;10002;10003;10004;10005;10006;10007;10008 6138;6139;6140;6141;6142;6143;6144;6145;6146;6147;6148;6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161;6162;6163;6164;6165;6166 6143 29 AEEIVASNPEK Unmodified 1185.5877 0.58773217 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 14.302 14.986 2 3.2415E-14 4764 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 209.86 196.28 10621000000 1185500000 952310000 920230000 9299100 8570500 9146100 972880000 1012300000 909570000 8870000 7551300 7528000 721380000 662430000 658920000 0 0 0 887600000 831440000 846760000 3464000 2619200 3064300 505 666 493 10009;10010;10011;10012;10013;10014;10015;10016;10017;10018;10019;10020;10021;10022;10023;10024;10025;10026;10027;10028;10029;10030 6167;6168;6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182;6183;6184;6185;6186;6187;6188;6189;6190 6178 24 AEELAEER Unmodified 945.44034 0.44033966 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.059 12.844 2 0.00045246 3609 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.26 115.37 999560000 70708000 77400000 71752000 6941500 9304200 9150100 94001000 88025000 87148000 0 0 0 81704000 53078000 70893000 0 0 0 94482000 88873000 81925000 4825500 4702800 4648000 506 245 494 10031;10032;10033;10034;10035;10036;10037;10038;10039;10040;10041;10042;10043;10044;10045;10046;10047;10048 6191;6192;6193;6194;6195;6196 6191 6 AEEPALNMLADGR Unmodified 1385.6609 0.66091389 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 35.31 33.831 2 0.00081946 16284 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.34 56.202 63834000 23988000 17732000 17309000 1487900 1817400 1500100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 507 592 495 10049;10050;10051;10052;10053;10054 6197;6198 6197 2 AEETIFSK Unmodified 923.46001 0.46001246 725 P0ACE7 hinT HIT-like protein HinT yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.644 19.912 2 0.0026738 7713 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.523 89.053 1933100000 198770000 207800000 0 4235500 3930000 4373300 231310000 236340000 198960000 3156500 3267300 0 120390000 120860000 124940000 1531500 1332900 1224700 163130000 155990000 147990000 1952300 1555400 0 508 725 496 10055;10056;10057;10058;10059;10060;10061;10062;10063;10064;10065;10066;10067;10068;10069;10070;10071;10072;10073;10074;10075;10076 6199;6200;6201;6202;6203;6204;6205;6206;6207;6208 6203 8 AEFAEVSK Unmodified 879.4338 0.43379771 9 CON__P02768-1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.756 15.368 2 0.0050974 4283 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 87.181 81.643 73090000 0 4799900 0 0 0 0 8070800 5944300 7060500 2906900 3011300 3423700 4565400 4977000 5468500 0 0 0 8586400 7560200 6715300 0 0 0 + 509 9 497 10077;10078;10079;10080;10081;10082;10083;10084;10085;10086;10087;10088;10089 6209;6210;6211 6210 3 AEFETTFADLGLK Unmodified 1440.7137 0.71366097 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 48.027 46.61 2 0.00028221 22729 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.658 80.895 34115000 0 15683000 15997000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2434000 0 510 544 498 10090;10091;10092 6212;6213 6212 0 AEFGEVDILVNNAGITR Unmodified 1816.9319 0.93192702 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 48.917 47.641 2;3 1.772E-39 23129 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 252.42 242.77 4510700000 294060000 255070000 239510000 0 8257200 6704300 330580000 315950000 316420000 9726500 10549000 11525000 424970000 382380000 400330000 3317000 5228700 3812500 501640000 519330000 435640000 11536000 11238000 12939000 511 868 499 10093;10094;10095;10096;10097;10098;10099;10100;10101;10102;10103;10104;10105;10106;10107;10108;10109;10110;10111;10112;10113;10114;10115;10116;10117;10118;10119;10120;10121;10122;10123;10124;10125;10126;10127;10128;10129;10130 6214;6215;6216;6217;6218;6219;6220;6221;6222;6223;6224;6225;6226;6227;6228;6229;6230;6231;6232;6233;6234;6235;6236;6237;6238;6239;6240;6241;6242;6243;6244;6245;6246;6247;6248;6249 6225 36 AEFGVDELQPWDIAYYSEK Unmodified 2259.0372 0.037179952 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.386 52.938 2 7.0211E-18 25962 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 175.88 172.8 500190000 63433000 58232000 57137000 0 0 0 41202000 28657000 23362000 0 0 0 33884000 31474000 32007000 0 0 0 43552000 39975000 47278000 0 0 0 512 1298 500 10131;10132;10133;10134;10135;10136;10137;10138;10139;10140;10141;10142 6250;6251;6252;6253;6254;6255;6256;6257;6258 6253 9 AEFTYQR Unmodified 913.42938 0.42938104 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.639 16.484 2 0.0012847 5731 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.72 120.29 172120000 19228000 20731000 15841000 2032800 1819500 1870800 12290000 15421000 14246000 0 0 0 12717000 12065000 12427000 0 0 0 7882500 12428000 11119000 0 0 0 513 139 501 10143;10144;10145;10146;10147;10148;10149;10150;10151;10152;10153;10154;10155;10156;10157 6259;6260;6261;6262;6263;6264;6265;6266;6267;6268 6260 6 AEFVRDDVFK Unmodified 1224.6139 0.61388734 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 2 2 2 1 1 2 25.048 24.214 2;3 0.0076635 10673 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 72.243 59.206 176220000 7565500 12110000 12905000 0 0 0 7824600 12267000 10864000 4840900 4684200 3255900 8623500 12323000 9577700 9109900 5704900 5534600 15296000 16787000 16949000 0 0 0 514 1787 502 10158;10159;10160;10161;10162;10163;10164;10165;10166;10167;10168;10169;10170;10171;10172;10173;10174;10175;10176;10177;10178;10179;10180 6269;6270 6270 2 AEFYSEVLTIVVDGK Unmodified 1668.8611 0.86105349 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 54.863 53.53 2;3 9.8101E-08 19596 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 160.15 147.57 2561500000 189450000 202340000 25991000 31215000 32818000 31475000 112510000 123060000 112470000 50619000 39480000 44207000 192790000 181420000 135000000 22930000 21849000 16962000 310110000 257620000 289470000 49435000 40568000 47756000 515 1726 503 10181;10182;10183;10184;10185;10186;10187;10188;10189;10190;10191;10192;10193;10194;10195;10196;10197;10198;10199;10200;10201;10202;10203;10204;10205;10206;10207;10208;10209;10210;10211;10212;10213;10214;10215;10216;10217;10218;10219;10220;10221;10222;10223;10224;10225;10226;10227;10228 6271;6272;6273;6274;6275;6276;6277;6278;6279;6280;6281;6282;6283;6284;6285;6286;6287;6288;6289;6290;6291;6292;6293;6294;6295;6296;6297;6298;6299;6300;6301;6302;6303;6304;6305;6306;6307;6308;6309;6310 6296 40 AEGALLINAVGVDDVK Unmodified 1582.8566 0.85663681 1879 P76621 csiD Protein CsiD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 42.51 41.14 2 2.6154E-10 20044 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 149.69 145.15 199000000 42115000 35688000 31915000 0 0 0 21014000 16105000 18041000 0 0 0 0 3922900 2717000 0 5476900 4451300 5244700 6889300 5418300 0 0 0 516 1879 504 10229;10230;10231;10232;10233;10234;10235;10236;10237;10238;10239;10240;10241 6311;6312;6313;6314;6315 6314 3 AEGEILLDGDNILTNSQDIALLR Unmodified 2482.2915 0.29149716 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 2 3 2 2 2 2 2 2 1 1 3 2 2 2 2 2 54.842 53.465 2;3 3.4523E-53 26185 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 341.85 334.97 1916000000 0 0 0 3432000 3956300 0 85051000 93782000 68533000 153070000 140670000 122110000 112340000 101710000 90558000 25854000 0 56643000 172850000 210740000 172720000 104190000 100140000 97603000 517 594 505 10242;10243;10244;10245;10246;10247;10248;10249;10250;10251;10252;10253;10254;10255;10256;10257;10258;10259;10260;10261;10262;10263;10264;10265;10266;10267;10268;10269;10270;10271;10272;10273;10274;10275;10276;10277;10278 6316;6317;6318;6319;6320;6321;6322;6323;6324;6325;6326;6327;6328;6329;6330;6331 6325 15 AEGETLATQQIK Unmodified 1287.667 0.66704513 132 P06864 ebgA Evolved beta-galactosidase subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 17.563 18.242 2 7.7235E-05 6817 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 100.48 93.283 41868000 0 1885100 0 0 0 0 6420100 4416400 5316100 0 0 0 4025000 3055900 2745000 0 0 0 4920700 4515500 4568300 0 0 0 518 132 506 10279;10280;10281;10282;10283;10284;10285;10286;10287;10288 6332;6333;6334;6335;6336 6333 5 AEGGTGDAISGFEGSVPNPYVK Unmodified 2151.012 0.012027834 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.014 39.349 2;3 1.2559E-52 19385 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 254.45 247.72 880000000 65566000 71699000 56175000 0 0 0 85897000 76923000 79219000 0 0 0 76888000 65603000 73845000 0 0 0 76560000 73896000 77732000 0 0 0 519 1956 507 10289;10290;10291;10292;10293;10294;10295;10296;10297;10298;10299;10300;10301;10302;10303;10304;10305;10306;10307;10308;10309;10310;10311;10312 6337;6338;6339;6340;6341;6342;6343;6344;6345;6346;6347;6348;6349;6350;6351 6339 15 AEGILLQCQR Unmodified 1186.6128 0.61284149 1838 P76227 ynjH Uncharacterized protein YnjH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 23.856 22.931 2 1.5449E-06 9843 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 163.77 144.68 159360000 52759000 46575000 45717000 739590 647750 807800 4578700 3542300 3995700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 520 1838 508 10313;10314;10315;10316;10317;10318;10319;10320;10321 6352;6353;6354 6353 3 AEGKSEFAENDAYVHATPLIR Unmodified 2317.1339 0.1338743 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 2 3 2 2 2 2 3 3 4 28.054 26.701 2;3;4;5 1.3157E-27 8988 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 232.95 226.47 6621200000 0 0 0 1292500000 1158600000 1374900000 0 0 0 81880000 109250000 89449000 0 0 0 53729000 45732000 45637000 0 0 0 772750000 858670000 738170000 521 133 509 10322;10323;10324;10325;10326;10327;10328;10329;10330;10331;10332;10333;10334;10335;10336;10337;10338;10339;10340;10341;10342;10343;10344;10345;10346;10347;10348;10349;10350;10351;10352;10353;10354;10355;10356 6355;6356;6357;6358;6359;6360;6361;6362;6363;6364;6365;6366;6367;6368;6369;6370;6371;6372;6373;6374;6375;6376 6372 22 AEGKSEFAENDAYVHATPLIRR Unmodified 2473.235 0.23498533 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 23.571 22.744 4;5 9.5512E-07 7223 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 99.407 98.168 187420000 0 0 0 38745000 55479000 57231000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13124000 10361000 12483000 522 133 510 10357;10358;10359;10360;10361;10362;10363;10364;10365;10366;10367;10368 6377;6378;6379;6380;6381;6382;6383;6384 6379 8 AEGLFKEER Unmodified 1077.5455 0.54547343 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 13.923 14.788 2;3 0.0001576 4688 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.4 129.86 503900000 52974000 45184000 51812000 0 0 0 51421000 41948000 46319000 0 0 0 25922000 31818000 27413000 0 0 0 39690000 47758000 41638000 0 0 0 523 635 511 10369;10370;10371;10372;10373;10374;10375;10376;10377;10378;10379;10380;10381;10382;10383;10384;10385;10386;10387;10388;10389;10390;10391;10392 6385;6386;6387;6388;6389;6390;6391;6392;6393;6394;6395;6396;6397;6398;6399;6400;6401 6394 15 AEGPTAFVSIMEGCNK Unmodified 1709.7753 0.77529172 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.174 43.697 2 1.5544E-06 17528 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 104.59 103.6 390330000 39452000 26823000 29446000 5012400 4958900 4616000 24581000 22746000 17527000 7855000 7656200 7341400 21772000 19396000 21172000 4400100 2752300 0 36301000 32966000 34090000 7083900 6562100 5815000 524 862 512 10393;10394;10395;10396;10397;10398;10399;10400;10401;10402;10403;10404;10405;10406;10407;10408;10409;10410;10411;10412;10413;10414;10415 6402;6403;6404;6405;6406;6407;6408 6402 7 AEGQPDAAMEDGDALIFMNFR Unmodified 2297.0093 0.0092674174 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.537 53.089 2;3 1.3639E-52 25013 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 260.73 258.9 598100000 38207000 31912000 32874000 0 0 0 54092000 48949000 50451000 0 0 0 74133000 63909000 59958000 0 0 0 51182000 47755000 44676000 0 0 0 525 1487 513 10416;10417;10418;10419;10420;10421;10422;10423;10424;10425;10426;10427;10428;10429;10430;10431;10432;10433;10434;10435;10436;10437;10438;10439 6409;6410;6411;6412;6413;6414;6415;6416;6417;6418 6418 7 AEGQPVATVFPK Unmodified 1242.6608 0.66083754 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.17 25.98 2 0.00058858 11616 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83 81.381 10680000000 168090000 179260000 146170000 257070000 236660000 341290000 10932000 10673000 12418000 987980000 976590000 971250000 6079300 3538500 4324200 93162000 51679000 58853000 5160600 5193300 8366200 2036100000 2050400000 2059200000 526 1816 514 10440;10441;10442;10443;10444;10445;10446;10447;10448;10449;10450;10451;10452;10453;10454;10455;10456;10457;10458;10459;10460;10461;10462;10463 6419 6419 1 AEGQQLVNQAMGGILQDSINEMGAK Unmodified 2601.2527 0.25268559 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 53.124 52.002 3 1.8582E-15 24340 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.83 141.13 369620000 0 0 36824000 0 0 0 60201000 62544000 56699000 0 0 0 0 37580000 39084000 4017100 0 8280000 0 0 64391000 0 0 0 527 804 515 10464;10465;10466;10467;10468;10469;10470;10471;10472 6420;6421 6421 2 AEGYALAGR Unmodified 906.45593 0.45593014 1708 P66948 bepA Beta-barrel assembly-enhancing protease yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.772 16.504 2 0.00021794 5626 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.01 80.315 153680000 17327000 0 15997000 2925100 2984800 2847900 5962300 16366000 13399000 963400 1073800 0 12508000 9436600 8676400 0 0 0 13890000 13889000 15436000 0 0 0 528 1708 516 10473;10474;10475;10476;10477;10478;10479;10480;10481;10482;10483;10484;10485;10486;10487;10488 6422;6423;6424;6425 6424 4 AEHEQQAIHCVLVDECQFLTR Unmodified 2582.2006 0.20059044 1206 P23331 tdk Thymidine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.675 35.055 3 1.2234E-22 17206 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 178.41 174.34 332690000 25354000 20070000 24001000 0 0 0 31002000 33336000 32680000 0 0 0 17929000 27665000 22652000 0 0 0 37445000 27375000 33175000 0 0 0 529 1206 517 10489;10490;10491;10492;10493;10494;10495;10496;10497;10498;10499;10500 6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436;6437 6428 12 AEHILMPGDIPVIQSDR Unmodified 1889.9669 0.96693232 1629 P60720 lipB Octanoyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.98 38.234 3 0.00012495 18480 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 67.416 60.285 304470000 24408000 26237000 23256000 0 0 0 23861000 27059000 18777000 3263500 0 3889900 18129000 18988000 15438000 2460700 0 0 32411000 29899000 23737000 3631300 5078700 3944700 530 1629 518 10501;10502;10503;10504;10505;10506;10507;10508;10509;10510;10511;10512;10513;10514;10515;10516;10517;10518 6438;6439;6440;6441;6442;6443;6444;6445;6446;6447;6448;6449;6450 6445 13 AEIDEEQLAAAPVIIR Unmodified 1736.9309 0.93086439 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 1 2 1 1 1 2 2 1 43.319 41.807 2;3 2.8261E-18 20391 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 184.44 154.64 500300000 51438000 51404000 31691000 0 0 0 12895000 11903000 54713000 0 0 0 16806000 19402000 18041000 0 0 0 82954000 81680000 67368000 0 0 0 531 1073 519 10519;10520;10521;10522;10523;10524;10525;10526;10527;10528;10529;10530;10531;10532;10533;10534;10535 6451;6452;6453;6454;6455;6456;6457 6452 7 AEIDQVK Unmodified 801.42323 0.42323303 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.039 12.97 2 0.0088743 3675 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.614 22.826 423800000 5786700 93863000 0 8802400 8576800 9715600 0 0 0 0 0 0 0 120140000 0 0 0 0 0 0 176910000 0 0 0 532 1409 520 10536;10537;10538;10539;10540;10541;10542;10543;10544;10545 6458;6459;6460;6461 6458 4 AEIDVAR Unmodified 772.40792 0.40791731 1939 P77756 queC 7-cyano-7-deazaguanine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 13.625 14.492 2 0.0015084 4703 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.75 69.114 288560000 0 0 35717000 0 0 0 52462000 57871000 18201000 0 0 0 3934100 0 3219200 0 0 0 0 55383000 61775000 0 0 0 533 1939 521 10546;10547;10548;10549;10550;10551;10552;10553 6462;6463;6464;6465 6462 4 AEIEGEIGDSHMGLAAR Unmodified 1754.8257 0.82574739 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 3 3 3 2 2 2 2 1 2 2 2 2 3 2 2 27.3 26.021 2;3 1.4166E-31 9760 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 299.69 294.8 3212900000 158850000 152300000 126450000 54390000 49339000 47643000 217070000 180100000 152080000 349480000 310570000 248790000 102400000 95453000 94198000 37588000 32716000 38891000 157720000 132130000 137220000 92116000 116090000 129310000 534 343 522 10554;10555;10556;10557;10558;10559;10560;10561;10562;10563;10564;10565;10566;10567;10568;10569;10570;10571;10572;10573;10574;10575;10576;10577;10578;10579;10580;10581;10582;10583;10584;10585;10586;10587;10588;10589;10590;10591;10592;10593;10594;10595;10596;10597;10598;10599;10600;10601;10602 6466;6467;6468;6469;6470;6471;6472;6473;6474;6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486;6487;6488;6489;6490;6491;6492;6493;6494;6495;6496;6497;6498;6499;6500;6501;6502;6503;6504;6505;6506;6507;6508;6509;6510;6511;6512;6513;6514;6515;6516;6517;6518;6519;6520;6521 6473 52 AEIGHVSAER Unmodified 1067.536 0.53597137 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 3 3 2 2 2 2 2 2 11.405 12.232 2;3 3.5323E-12 3192 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 206.23 181.02 1477000000 95419000 143210000 79046000 0 0 0 209450000 180760000 192430000 0 0 0 113310000 99014000 108090000 0 0 0 99934000 77239000 79121000 0 0 0 535 285 523 10603;10604;10605;10606;10607;10608;10609;10610;10611;10612;10613;10614;10615;10616;10617;10618;10619;10620;10621;10622;10623;10624;10625;10626;10627;10628 6522;6523;6524;6525;6526;6527;6528;6529;6530;6531;6532;6533;6534 6530 13 AEIHEYVLR Unmodified 1128.5928 0.59275797 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 2 2 2 1 18.971 18.954 2;3 0.00015756 5324 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 130.27 114.77 143250000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 59376000 40443000 42141000 0 0 0 1290900 0 0 536 1004 524 10629;10630;10631;10632;10633;10634;10635 6535;6536 6536 2 AEIIVYPDAGHAFNADYR Unmodified 2020.9643 0.96428978 1614 P56262 ysgA Putative carboxymethylenebutenolidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 36.894 35.454 3 8.6574E-06 17204 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.85 78.804 39771000 14498000 13143000 12131000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 537 1614 525 10636;10637;10638 6537;6538;6539 6537 3 AEIIVYPDAGHAFNADYRPSYHAASAEDGWQR Unmodified 3576.6447 0.64469356 1614 P56262 ysgA Putative carboxymethylenebutenolidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 1 2 1 1 1 1 2 2 36.1 34.535 4;5 1.3448E-18 16505 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.84 148.08 801590000 200290000 184260000 158550000 0 0 2352200 63296000 30536000 52267000 0 0 0 10982000 7905200 7710000 0 0 0 19925000 32263000 31254000 0 0 0 538 1614 526 10639;10640;10641;10642;10643;10644;10645;10646;10647;10648;10649;10650;10651;10652;10653;10654;10655;10656;10657;10658;10659 6540;6541;6542;6543;6544;6545;6546;6547;6548;6549 6549 10 AEILHGISAEELEQLITLIAK Unmodified 2290.2784 0.27841328 466 P0A8W2 slyA Transcriptional regulator SlyA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.609 54.153 3 2.4776E-22 26693 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 176.42 175.34 982330000 106200000 97163000 92141000 1033000 0 0 101610000 87334000 85418000 0 0 2899600 73558000 61621000 65634000 0 0 0 70398000 71160000 66165000 0 0 0 539 466 527 10660;10661;10662;10663;10664;10665;10666;10667;10668;10669;10670;10671;10672;10673 6550;6551;6552;6553;6554;6555;6556;6557;6558;6559;6560;6561 6554 12 AEITASLVK Unmodified 930.5386 0.53859714 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 2 3 2 2 2 2 2 2 2 1 1 1 3 3 3 1 2 2 22.81 22.248 1;2 0.00073823 9108 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 102.51 61.941 26543000000 1833300000 1814200000 1597700000 17151000 22049000 20034000 2289700000 2066700000 2348800000 35036000 23552000 33377000 2409400000 1837300000 1849700000 12652000 12357000 16501000 2776800000 2620100000 2845600000 21225000 20549000 19733000 540 267 528 10674;10675;10676;10677;10678;10679;10680;10681;10682;10683;10684;10685;10686;10687;10688;10689;10690;10691;10692;10693;10694;10695;10696;10697;10698;10699;10700;10701;10702;10703;10704;10705;10706;10707;10708;10709;10710;10711;10712;10713;10714;10715;10716;10717;10718;10719;10720;10721;10722;10723 6562;6563;6564;6565;6566;6567;6568;6569;6570;6571;6572;6573;6574;6575;6576;6577;6578;6579;6580;6581;6582;6583;6584;6585;6586;6587;6588 6588 24 AEITASLVK Acetyl (Protein N-term) 972.54916 0.54916182 267 P0A6P1 tsf Elongation factor Ts yes yes 1 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.791 38.997 2 0.018368 18186 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 60.91 35.987 323380000 22158000 0 19173000 0 0 0 27067000 23910000 23820000 0 0 374700 31504000 37797000 31434000 0 0 0 31942000 33993000 38539000 944400 719680 0 541 267 528 10724;10725;10726;10727;10728;10729;10730;10731;10732;10733;10734;10735;10736;10737 6589;6590 6590 1 AEITLDYQLK Unmodified 1192.634 0.63395408 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.256 33.768 2 0.00042581 16355 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 103.87 94.658 1749400000 303710000 245770000 224360000 1517800 1588000 0 244820000 246410000 239830000 0 0 0 34417000 35507000 31482000 0 0 0 47056000 49084000 43899000 0 0 0 542 1038 529 10738;10739;10740;10741;10742;10743;10744;10745;10746;10747;10748;10749;10750;10751 6591;6592;6593;6594;6595;6596;6597 6593 7 AEITPANADTVTR Unmodified 1357.6838 0.68375782 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.781 19.346 2 2.345E-07 7546 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 152.54 134.23 845690000 101180000 103680000 83854000 0 0 0 63618000 66960000 58214000 0 0 0 59925000 52519000 51373000 0 0 0 69459000 68142000 66760000 0 0 0 543 512 530 10752;10753;10754;10755;10756;10757;10758;10759;10760;10761;10762;10763 6598;6599;6600;6601;6602;6603;6604;6605;6606;6607;6608;6609 6598 12 AEIVASFER Unmodified 1020.524 0.52400971 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.267 25.175 2 1.0484E-07 11518 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.69 125.13 4241500000 251090000 228550000 218870000 3991600 3605500 3221500 541190000 473540000 421750000 0 1698600 2258000 376650000 303530000 351310000 1393300 894400 0 377260000 351060000 326880000 0 1281800 1444700 544 325 531 10764;10765;10766;10767;10768;10769;10770;10771;10772;10773;10774;10775;10776;10777;10778;10779;10780;10781;10782;10783;10784 6610;6611;6612;6613;6614;6615;6616;6617;6618;6619;6620;6621;6622;6623;6624;6625;6626;6627;6628;6629;6630 6613 21 AEKDPEEGGMRPNQMVLTSIDCPTCGR Unmodified 3047.3569 0.35690944 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 1 2 1 2 2 2 2 1 1 1 30.404 28.875 3;4 7.0358E-16 13890 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 142.23 142.11 594880000 34187000 35333000 41170000 0 0 0 40683000 40383000 42001000 3716700 0 3023400 46427000 44679000 45262000 0 0 0 64817000 68825000 71317000 4360100 4708400 3981900 545 124 532 10785;10786;10787;10788;10789;10790;10791;10792;10793;10794;10795;10796;10797;10798;10799;10800;10801;10802;10803;10804;10805;10806;10807;10808;10809 6631;6632;6633;6634;6635;6636;6637;6638;6639;6640;6641;6642;6643;6644;6645;6646 6633 16 AELALLK Unmodified 756.47454 0.47454032 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.749 26.551 2 0.0086175 11925 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.643 17.265 1326400000 122530000 120980000 102220000 41920000 29702000 36593000 89475000 102970000 93949000 30316000 32818000 28126000 52942000 52601000 55684000 11918000 9641100 7097500 80360000 73097000 72606000 27671000 25276000 25884000 546 956 533 10810;10811;10812;10813;10814;10815;10816;10817;10818;10819;10820;10821;10822;10823;10824;10825;10826;10827;10828;10829;10830;10831;10832;10833 6647;6648;6649;6650;6651;6652;6653;6654;6655;6656;6657;6658;6659;6660;6661;6662;6663;6664;6665;6666;6667;6668 6664 22 AELAVLEK Unmodified 871.50148 0.50148335 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.761 22.974 2 0.0032899 10041 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 93.374 36.093 2143900000 169470000 171810000 126900000 0 0 0 156290000 161460000 160470000 3824200 3420100 3258100 179530000 152160000 170410000 3175800 1992400 2402000 235970000 220400000 212610000 2222300 2704000 3426200 547 680 534 10834;10835;10836;10837;10838;10839;10840;10841;10842;10843;10844;10845;10846;10847;10848;10849;10850;10851;10852;10853;10854 6669;6670;6671;6672;6673;6674;6675;6676;6677;6678;6679;6680;6681 6675 9 AELDALQAEIR Unmodified 1227.6459 0.64591575 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.413 33.781 2 1.0924E-14 16146 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 220.45 197.92 5144600000 391290000 329860000 321730000 879560 650100 686280 541730000 543110000 520360000 1140500 0 0 356370000 387540000 369480000 0 0 0 465380000 466010000 447390000 0 0 973570 548 441 535 10855;10856;10857;10858;10859;10860;10861;10862;10863;10864;10865;10866;10867;10868;10869;10870;10871 6682;6683;6684;6685;6686;6687;6688;6689;6690;6691;6692;6693 6689 12 AELDEYREELVSHFAR Unmodified 1962.9436 0.94355434 814 P0ADW3 yhcB Inner membrane protein YhcB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 39.488 37.583 3;4 1.4701E-10 18563 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 148.33 138.75 1451800000 25155000 25135000 20759000 824610 1337300 1257100 175810000 186760000 193320000 10884000 9710200 8844600 131250000 148420000 136670000 0 0 0 56815000 151920000 162360000 4534800 0 0 549 814 536 10872;10873;10874;10875;10876;10877;10878;10879;10880;10881;10882;10883;10884;10885;10886;10887;10888;10889;10890;10891;10892;10893;10894;10895;10896;10897;10898;10899;10900;10901;10902 6694;6695;6696;6697;6698;6699;6700;6701;6702;6703;6704;6705;6706;6707;6708;6709;6710;6711;6712 6702 17 AELDGKPVIVCSTGIGGPSTSIAVEELAQLGIR Unmodified 3336.7599 0.75990624 1079 P12758 udp Uridine phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 54.219 52.771 3;4 2.3773E-33 26160 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 182.82 182.82 19859000000 576700000 606510000 496910000 0 0 0 2773700000 3133200000 3058900000 0 0 0 1922700000 1657000000 1697500000 0 0 0 491770000 1707200000 1737200000 0 0 0 550 1079 537 10903;10904;10905;10906;10907;10908;10909;10910;10911;10912;10913;10914;10915;10916;10917;10918;10919;10920;10921;10922;10923;10924;10925 6713;6714;6715;6716;6717;6718;6719;6720;6721;6722;6723;6724;6725;6726;6727;6728;6729;6730;6731 6714 18 AELDPDKTVMDNLAEGK Unmodified 1844.8826 0.88259357 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.08 31.619 3 8.0788E-07 15054 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 78.78 76.393 222000000 16773000 21748000 13139000 0 0 0 22349000 0 21083000 0 0 1028900 23534000 19285000 15704000 0 0 0 21645000 22510000 23201000 0 0 0 551 1564 538 10926;10927;10928;10929;10930;10931;10932;10933;10934;10935;10936;10937 6732;6733;6734 6733 3 AELEQAK Unmodified 787.40758 0.40758296 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.558 11.519 2 0.010377 2695 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.866 12.443 3466700000 0 0 508060000 4911800 6070800 7425500 0 0 0 0 0 0 745480000 797960000 715830000 0 0 0 0 0 681000000 0 0 0 552 1662 539 10938;10939;10940;10941;10942;10943;10944;10945 6735 6735 1 AELGIPK Unmodified 726.42759 0.42759012 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 19.523 19.826 1;2 0.010377 5648 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 86.866 29.764 7403000000 648620000 511360000 466980000 166380000 160190000 162600000 846480000 1001700000 869890000 148520000 121200000 121440000 291090000 268300000 236420000 8169700 5182400 5258800 332230000 324480000 292640000 130590000 136340000 146880000 553 548 540 10946;10947;10948;10949;10950;10951;10952;10953;10954;10955;10956;10957;10958;10959;10960;10961;10962;10963;10964;10965;10966;10967;10968;10969;10970;10971;10972;10973;10974;10975;10976;10977;10978;10979;10980;10981;10982;10983;10984;10985;10986;10987;10988;10989;10990 6736;6737;6738;6739;6740;6741;6742;6743;6744;6745;6746;6747;6748;6749;6750;6751;6752;6753;6754;6755;6756;6757 6752 19 AELGLDAAGMEAK Unmodified 1274.6177 0.61765209 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.18 28.612 2 6.7452E-06 11065 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 125.22 121.02 378880000 25764000 27710000 23553000 4718100 5526000 4409300 25371000 22495000 21475000 11020000 10178000 9424300 23242000 21677000 26562000 0 0 0 32781000 33419000 30082000 6557600 6415400 6498200 554 1909 541 10991;10992;10993;10994;10995;10996;10997;10998;10999;11000;11001;11002;11003;11004;11005;11006;11007;11008;11009;11010;11011 6758;6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770;6771;6772;6773;6774;6775;6776;6777;6778 6758 19 AELGLDAAGMEAKIK Unmodified 1515.7967 0.79667909 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 4 4 3 4 4 4 4 4 4 4 4 52.948 51.929 2;3 0.025689 20869 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 51.927 42.738 47415000000 0 0 0 5421400000 4967200000 4540000000 0 0 0 5990200000 5358900000 5181200000 0 0 0 1270300000 1421600000 1280200000 0 0 0 4205400000 3729400000 4049500000 555 1909 542 11012;11013;11014;11015;11016;11017;11018;11019;11020;11021;11022;11023;11024;11025;11026;11027;11028;11029;11030;11031;11032;11033;11034;11035;11036;11037;11038;11039;11040;11041;11042;11043;11044;11045;11046;11047;11048;11049;11050;11051;11052;11053;11054;11055;11056;11057;11058 6779;6780;6781;6782;6783;6784;6785;6786;6787;6788;6789;6790;6791;6792;6793;6794 6781 16 AELGLDAAGMEAKIK Oxidation (M) 1531.7916 0.79159371 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 1 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 48.202 47.153 2 0.072727 18875 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 40.496 23.06 336450000 0 0 0 29236000 36408000 37681000 0 0 0 120100000 50340000 41386000 0 0 0 6776600 5367300 6632600 0 0 2522700 0 0 0 556 1909 542 11059;11060;11061;11062;11063;11064;11065;11066;11067;11068 6795 6795 1 AELLLGVNIDHIATLR Unmodified 1746.9992 0.99921872 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 2 2 2 1 2 2 2 1 1 1 48.559 47.152 2;3 1.9191E-10 23357 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 152.4 141.79 655830000 21199000 16558000 18376000 1868500 2348900 2191800 102310000 20633000 17684000 4597700 3244900 5158200 88005000 67426000 14188000 0 0 0 92789000 91148000 77411000 3234200 2834800 2626700 557 319 543 11069;11070;11071;11072;11073;11074;11075;11076;11077;11078;11079;11080;11081;11082;11083;11084;11085;11086;11087;11088;11089;11090;11091;11092;11093;11094;11095;11096 6796;6797;6798;6799;6800;6801;6802;6803;6804;6805;6806;6807;6808;6809;6810;6811;6812;6813;6814;6815;6816 6798 18 AELLYGVIDNSDFYR Unmodified 1773.8574 0.85736509 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 51.193 50.001 2;3 1.4685E-20 24699 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 259.35 253.18 2092000000 301770000 272050000 266710000 26563000 36201000 24953000 135130000 132550000 128580000 22227000 18589000 15132000 101860000 99998000 91910000 2716000 916020 1082900 134890000 145810000 132410000 0 0 0 558 1211 544 11097;11098;11099;11100;11101;11102;11103;11104;11105;11106;11107;11108;11109;11110;11111;11112;11113;11114;11115;11116;11117;11118;11119;11120;11121;11122;11123;11124;11125;11126;11127;11128;11129;11130;11131;11132;11133;11134;11135 6817;6818;6819;6820;6821;6822;6823;6824;6825;6826;6827;6828;6829;6830;6831;6832;6833;6834;6835;6836;6837;6838;6839;6840;6841;6842;6843;6844;6845;6846;6847;6848 6821 32 AELMAVLAHAGMTR Unmodified 1469.7483 0.74828911 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.494 36.631 3 0.00029998 17041 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 67.358 60.63 629710000 69148000 75550000 65503000 1601000 1301900 1943100 66470000 0 61036000 5373100 4025000 4944800 70519000 64151000 63065000 0 0 0 0 0 67376000 2726100 2409800 2568900 559 1172 545 11136;11137;11138;11139;11140;11141;11142;11143;11144;11145;11146;11147;11148;11149;11150;11151;11152;11153;11154 6849;6850;6851;6852;6853;6854;6855;6856;6857 6855 9 AELSDQEMLR Unmodified 1190.5601 0.56013721 1077 P12282 moeB Molybdopterin-synthase adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 23.476 22.886 2 7.5293E-05 9909 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.76 119.72 115110000 14120000 16958000 13830000 0 0 0 0 0 0 0 0 0 11628000 13212000 11008000 0 0 0 9398800 13564000 11388000 0 0 0 560 1077 546 11155;11156;11157;11158;11159;11160;11161;11162;11163 6858;6859;6860;6861;6862;6863 6860 5 AELSHLLGEK Unmodified 1095.5924 0.59242362 621 P0AB03 ycbJ Uncharacterized protein YcbJ yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 22.778 21.862 2 0.077156 9472 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 47.853 42.105 20982000 0 0 0 0 0 0 7544100 5811100 7626400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 561 621 547 11164;11165;11166 6864;6865 6865 0 AELTAIIAR Unmodified 956.56548 0.56548059 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 30.269 28.993 2 6.0871E-06 13470 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.14 116.7 275370000 97225000 94421000 83286000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 438450 0 562 1835 548 11167;11168;11169;11170 6866;6867 6867 2 AELWAGIR Unmodified 914.4974 0.49740102 1108 P15286 flk Flagellar regulator flk yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 33.401 31.9 2 0.0016084 15155 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.43 71.244 32495000 1763500 0 0 0 0 0 2843400 0 2147700 0 0 0 3008400 3297800 2442400 0 0 0 4859400 6937100 4573500 621540 0 0 563 1108 549 11171;11172;11173;11174;11175;11176;11177;11178;11179;11180 6868 6868 1 AEMELFAAQAK Unmodified 1207.5907 0.59070906 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 32.205 30.622 2 0.00020258 13738 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 104.17 94.953 378860000 12101000 8209100 0 3195300 4270000 5808600 38394000 33704000 29673000 30879000 12285000 19847000 29844000 25571000 21966000 0 0 0 23883000 25500000 28357000 6780900 9369500 9226600 564 146 550 11181;11182;11183;11184;11185;11186;11187;11188;11189;11190;11191;11192;11193;11194;11195;11196;11197;11198;11199;11200;11201;11202;11203 6869;6870;6871;6872;6873;6874;6875;6876;6877;6878;6879;6880;6881;6882 6882 14 AEMENLR Unmodified 861.40145 0.40145173 211 P09372 grpE Protein GrpE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.543 14.118 2 0.00029567 4377 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 158.53 128.35 4118000000 346280000 340790000 291980000 2321200 2149000 0 379720000 394310000 362400000 14057000 11984000 11974000 348990000 342010000 325060000 2328400 1560200 2372800 325870000 299480000 299060000 3952200 3969900 5388400 565 211 551 11204;11205;11206;11207;11208;11209;11210;11211;11212;11213;11214;11215;11216;11217;11218;11219;11220;11221;11222;11223;11224;11225;11226 6883;6884;6885;6886;6887;6888;6889;6890;6891;6892;6893;6894;6895;6896;6897;6898;6899;6900;6901 6896 18 AEMENLR Oxidation (M) 877.39637 0.39636635 211 P09372 grpE Protein GrpE yes yes 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.779 11.594 2 0.065956 2816 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 62.714 46.56 404610000 20778000 20319000 20808000 0 0 0 55366000 48042000 52994000 0 0 0 29361000 28633000 31322000 0 0 0 34370000 31893000 30727000 0 0 0 566 211 551 11227;11228;11229;11230;11231;11232;11233;11234;11235;11236;11237;11238 6902;6903 6903 2 AEMFPAQVR Unmodified 1047.5172 0.51715019 893 P0AEX3 kgtP Alpha-ketoglutarate permease yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.455 24.271 2 0.0060705 10712 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.123 84.767 304120000 36767000 40364000 32480000 5309500 5825500 5606100 16563000 14531000 12749000 3215100 2357800 3754200 13758000 14229000 11296000 0 0 0 25028000 24289000 22894000 3718200 4521900 4863500 567 893 552 11239;11240;11241;11242;11243;11244;11245;11246;11247;11248;11249;11250;11251;11252;11253;11254;11255;11256;11257;11258;11259 6904;6905 6904 2 AEMNIAPGKPLELLLR Unmodified 1763.9968 0.99677588 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 45.921 44.372 2;3 7.4972E-10 21596 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 144.47 144.47 4311600000 421490000 396580000 345190000 1862700 1208600 2069100 349880000 297630000 272600000 2203700 2677100 1966900 358870000 318470000 337210000 0 0 0 385660000 414810000 401200000 0 0 0 568 158 553 11260;11261;11262;11263;11264;11265;11266;11267;11268;11269;11270;11271;11272;11273;11274;11275;11276;11277;11278;11279;11280;11281;11282;11283;11284;11285;11286;11287;11288;11289 6906;6907;6908;6909;6910;6911;6912;6913;6914;6915;6916;6917;6918;6919;6920;6921;6922;6923;6924;6925;6926;6927;6928;6929 6914 24 AEMPANYLIVGSPAK Unmodified 1559.8018 0.80176447 1883 P77181 paaY Phenylacetic acid degradation protein PaaY yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 39.008 37.377 2 5.0697E-06 17834 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.75 92.803 31257000 2860300 13931000 12614000 0 0 0 1851200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 569 1883 554 11290;11291;11292;11293 6930 6930 1 AEMSEYLFDK Unmodified 1231.5431 0.54309017 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.159 33.656 2 0.00023357 16482 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 118.18 115.34 1437100000 135440000 130350000 124930000 5437300 6111900 5103900 95288000 95388000 97842000 23824000 23950000 26676000 80300000 71308000 72148000 96984000 66254000 60502000 66826000 70269000 62097000 6758000 6643500 6634200 570 290 555 11294;11295;11296;11297;11298;11299;11300;11301;11302;11303;11304;11305;11306;11307;11308;11309;11310;11311;11312;11313;11314;11315;11316;11317 6931;6932;6933;6934;6935;6936;6937;6938;6939;6940;6941;6942;6943;6944;6945;6946;6947;6948;6949;6950 6936 20 AENGEEPIKEHLLLTR Unmodified 1847.9741 0.97412619 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 24.124 23.089 3;4 0.00010411 8214 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 75.463 75.054 516320000 42071000 39402000 27773000 4178500 5008100 5047300 30342000 30065000 29171000 16413000 15935000 11963000 33839000 35550000 36700000 0 0 0 45561000 45609000 44442000 5089200 6044300 6114500 571 899 556 11318;11319;11320;11321;11322;11323;11324;11325;11326;11327;11328;11329;11330;11331;11332;11333;11334;11335;11336;11337;11338;11339;11340;11341;11342;11343;11344;11345;11346;11347;11348;11349;11350;11351;11352;11353;11354;11355;11356;11357 6951;6952;6953;6954;6955;6956 6952 5 AENITAQPFDAVIFHGDSDQLR Unmodified 2443.1768 0.17680175 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 1 1 2 1 1 2 2 2 1 1 1 1 1 2 2 1 1 45.33 43.873 2;3 3.6783E-15 20617 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 140.17 132.37 1722000000 98020000 102250000 75664000 43760000 37097000 34702000 94949000 87035000 71293000 79049000 74552000 74008000 64803000 84644000 63485000 30878000 19716000 21464000 8682900 10269000 229410000 111660000 103640000 100980000 572 215 557 11358;11359;11360;11361;11362;11363;11364;11365;11366;11367;11368;11369;11370;11371;11372;11373;11374;11375;11376;11377;11378;11379;11380;11381;11382;11383;11384;11385;11386;11387;11388;11389;11390 6957;6958;6959;6960;6961;6962;6963;6964;6965;6966;6967;6968;6969;6970;6971;6972;6973;6974;6975;6976;6977 6976 21 AENMLWHK Unmodified 1027.4909 0.49093544 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.288 17.759 2 0.0063856 6629 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.064 82.664 255250000 31076000 27428000 26860000 3582900 2844600 1762500 41958000 42473000 35953000 3764200 2911600 2686800 0 0 0 0 0 0 11516000 10865000 0 2964200 3626300 2976700 573 548 558 11391;11392;11393;11394;11395;11396;11397;11398;11399;11400;11401;11402;11403;11404;11405;11406;11407 6978;6979;6980;6981;6982;6983;6984;6985;6986;6987;6988 6980 10 AENQYYGTGR Unmodified 1157.5102 0.51015055 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.655 13.106 2 2.9261E-07 3037 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 177.3 173.19 2218400000 362580000 349360000 380910000 0 0 0 112460000 122920000 116420000 49257000 39045000 43404000 271300000 0 0 17370000 17281000 24670000 0 0 236480000 22170000 24856000 27898000 574 378 559 11408;11409;11410;11411;11412;11413;11414;11415;11416;11417;11418;11419;11420;11421;11422;11423;11424 6989;6990;6991;6992;6993;6994;6995;6996;6997;6998;6999;7000;7001;7002;7003;7004;7005 6989 17 AENSNTSR Unmodified 877.38897 0.38897279 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 1 3.8119 4.6694 2 0.001419 587 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.01 103.47 28216000 3138200 3170600 2932400 0 0 0 0 0 0 0 0 0 2300800 1826900 1094100 0 0 0 3894700 3957600 5900600 0 0 0 575 444 560 11425;11426;11427;11428;11429;11430;11431;11432;11433;11434;11435 7006;7007;7008;7009;7010;7011;7012 7009 7 AENTVVTGAGWLK Unmodified 1344.7038 0.70376498 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.276 32.811 2 1.5947E-07 16065 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 154.24 150.09 740600000 0 0 0 0 0 0 114630000 103810000 96051000 14681000 13166000 11220000 49001000 50860000 50465000 11381000 7300500 8947000 65683000 69186000 66324000 3940200 0 3951700 576 1916 561 11436;11437;11438;11439;11440;11441;11442;11443;11444;11445;11446;11447;11448;11449;11450;11451;11452 7013;7014;7015;7016;7017;7018;7019;7020;7021;7022;7023 7019 11 AEPLISEMEAVINK Unmodified 1542.7963 0.79634474 466 P0A8W2 slyA Transcriptional regulator SlyA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.959 50.711 2;3 1.8379E-08 24931 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 152.7 144.11 490960000 55030000 50783000 43932000 0 0 0 48681000 49658000 48967000 0 0 0 32905000 32267000 24115000 0 0 0 34041000 35034000 35547000 0 0 0 577 466 562 11453;11454;11455;11456;11457;11458;11459;11460;11461;11462;11463;11464;11465;11466;11467;11468;11469;11470;11471;11472;11473;11474;11475;11476 7024;7025;7026;7027;7028;7029;7030;7031;7032;7033;7034;7035;7036;7037;7038 7033 15 AEQAALQADK Unmodified 1043.5247 0.52473799 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.617 12.449 2 0.00021794 3382 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.62 87.007 231320000 14362000 20328000 14066000 0 0 0 19213000 24047000 20712000 0 0 0 17643000 18488000 16255000 0 0 0 23342000 21280000 21584000 0 0 0 578 948 563 11477;11478;11479;11480;11481;11482;11483;11484;11485;11486;11487;11488 7039;7040;7041;7042;7043;7044;7045;7046 7043 8 AEQAALQADKR Unmodified 1199.6258 0.62584901 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.713 11.529 3 0.024542 2804 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 37.968 25.012 635060000 68184000 71291000 59835000 0 0 0 53764000 58983000 61758000 0 0 0 44361000 41064000 39009000 0 0 0 45052000 47513000 44243000 0 0 0 579 948 564 11489;11490;11491;11492;11493;11494;11495;11496;11497;11498;11499;11500 7047;7048 7047 0 AEQAGDNLSCIMVTYPSTHGVYEETIR Unmodified 3040.3906 0.39063563 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.474 40.642 3 2.7052E-31 20109 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 195.73 189.85 2207900000 162950000 166200000 139190000 3794900 3801500 3416100 173320000 188190000 191120000 0 3997000 3833100 160170000 165120000 140950000 0 0 0 223050000 225570000 240540000 3036500 5099300 4573000 580 1409 565 11501;11502;11503;11504;11505;11506;11507;11508;11509;11510;11511;11512;11513;11514;11515;11516;11517;11518;11519;11520 7049;7050;7051;7052;7053;7054;7055;7056;7057;7058;7059;7060 7051 12 AEQLEENVQALNNLTFSTK Unmodified 2148.0699 0.069877064 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 45.003 43.357 2 2.6363E-29 21324 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 266.35 257.61 45838000 10576000 10563000 10883000 0 0 0 5097800 3716100 5002200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 581 1958 566 11521;11522;11523;11524;11525;11526 7061;7062;7063;7064 7062 4 AEQQGINAEK Unmodified 1086.5306 0.53055165 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 10.94 11.384 2 5.9101E-05 2243 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 114.89 110.16 703060000 0 1561700 0 0 0 1625000 129500000 133360000 121800000 30367000 34866000 36612000 0 104550000 0 28122000 23881000 26752000 0 0 8109500 12100000 9849300 0 582 30 567 11527;11528;11529;11530;11531;11532;11533;11534;11535;11536;11537;11538;11539;11540;11541;11542;11543;11544 7065;7066;7067;7068;7069;7070;7071;7072;7073;7074;7075;7076 7074 12 AEQQLDK Unmodified 830.4134 0.41339662 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 1 1 1 1 1 1 8.8131 9.5813 2 0.0017432 2047 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 124.59 89.489 3267400000 1241300000 994640000 671600000 0 0 0 40477000 33967000 35259000 0 0 0 33138000 30898000 21975000 0 0 46203000 44398000 39012000 34537000 0 0 0 583 1217 568 11545;11546;11547;11548;11549;11550;11551;11552;11553;11554;11555;11556;11557;11558 7077;7078;7079;7080;7081;7082;7083;7084;7085;7086;7087 7086 11 AEQQLDKDSAIVPVYYYVNAR Unmodified 2441.2227 0.22268931 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 2 3 3 2 1 1 2 2 2 1 1 1 2 2 1 1 41.775 40.04 2;3;4 1.0699E-62 19373 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 356.82 344.67 4483700000 1450300000 1365900000 1095800000 11293000 9898200 11025000 86392000 72108000 75929000 0 0 1570000 38451000 35317000 45890000 0 0 0 72522000 59822000 51402000 0 0 0 584 1217 569 11559;11560;11561;11562;11563;11564;11565;11566;11567;11568;11569;11570;11571;11572;11573;11574;11575;11576;11577;11578;11579;11580;11581;11582;11583;11584;11585 7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101 7098 14 AEQYLLENETTK Unmodified 1437.6987 0.69873919 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.009 23.112 2 7.9889E-12 10111 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 190.86 179.54 278170000 29966000 26700000 22983000 0 0 0 29445000 26864000 25647000 0 0 0 21606000 15804000 18371000 0 0 0 23535000 20774000 16476000 0 0 0 585 31 570 11586;11587;11588;11589;11590;11591;11592;11593;11594;11595;11596;11597 7102;7103;7104;7105;7106 7102 5 AESCDDCDTYLK Unmodified 1475.5545 0.55445949 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.174 17.856 2 1.8379E-08 6503 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 170.72 166.42 425470000 49282000 46189000 44315000 0 0 0 25783000 29838000 29603000 0 0 0 28286000 27137000 31443000 0 0 0 34387000 39983000 39228000 0 0 0 586 1085 571 11598;11599;11600;11601;11602;11603;11604;11605;11606;11607;11608;11609 7107;7108;7109;7110;7111;7112;7113;7114;7115;7116;7117;7118 7110 12 AESEPEFAQLINATSVEAIAK Unmodified 2217.1165 0.11649291 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.128 51.688 2;3 2.7925E-34 25131 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 263.75 262.79 527680000 24744000 21556000 20435000 0 0 0 46684000 44465000 36160000 0 0 0 53584000 47302000 46290000 0 0 0 61493000 61541000 63430000 0 0 0 587 1497 572 11610;11611;11612;11613;11614;11615;11616;11617;11618;11619;11620;11621;11622;11623;11624;11625;11626;11627;11628;11629;11630;11631;11632;11633 7119;7120;7121;7122;7123;7124;7125;7126;7127;7128;7129;7130;7131;7132;7133;7134;7135;7136;7137;7138 7128 20 AESFQAVADATLAYHK Unmodified 1720.842 0.84204938 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 35.263 33.581 3 1.0013E-08 16024 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.067 70.138 888260000 53159000 54706000 48336000 0 0 0 81296000 74205000 74129000 4578800 6062000 4499300 79550000 72399000 75632000 0 0 0 95280000 81739000 82014000 0 0 673270 588 1716 573 11634;11635;11636;11637;11638;11639;11640;11641;11642;11643;11644;11645;11646;11647;11648;11649;11650 7139;7140;7141;7142;7143;7144;7145;7146;7147;7148;7149;7150 7142 12 AESFQAVADATLAYHKK Unmodified 1848.937 0.9370124 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 29.637 27.388 3 0.0001293 10335 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 66.965 62.794 12040000 0 0 0 0 0 0 0 0 0 4691900 3601400 3746700 0 0 0 0 0 0 0 0 0 0 0 0 589 1716 574 11651;11652;11653 7151;7152;7153;7154 7153 4 AESFTTTNR Unmodified 1025.4778 0.47778779 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.323 13.088 2 2.34E-08 3046 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 167.24 155.52 3005600000 270030000 245120000 263240000 0 0 0 240450000 224860000 223170000 0 0 0 254520000 238400000 191390000 0 16018000 0 264360000 280440000 293620000 0 0 0 590 793 575 11654;11655;11656;11657;11658;11659;11660;11661;11662;11663;11664;11665;11666;11667 7155;7156;7157;7158;7159;7160;7161;7162;7163;7164;7165;7166 7155 12 AESGGTITR Unmodified 890.44576 0.44575938 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.493 11.27 2 9.7451E-05 2532 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 136.8 119.83 1826800000 138340000 137330000 119700000 0 0 0 163440000 149780000 135080000 0 0 0 141000000 146760000 138290000 0 0 0 187290000 187550000 176340000 0 5886700 0 591 158 576 11668;11669;11670;11671;11672;11673;11674;11675;11676;11677;11678;11679;11680 7167;7168;7169;7170;7171;7172;7173 7172 7 AESIGDAMKK Unmodified 1048.5223 0.52229515 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 2 2 2 1 2 2 1 12.598 13.108 2;3 0.0012172 3175 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 87.476 83.339 61928000 0 0 0 4146500 2450800 4958300 0 0 0 9754300 9277500 9262300 0 0 10367000 0 0 0 0 0 0 4929900 4600200 2180800 592 210 577 11681;11682;11683;11684;11685;11686;11687;11688;11689;11690;11691;11692;11693;11694;11695;11696 7174;7175;7176;7177 7175 4 AESTVTADSK Unmodified 1007.4771 0.47711909 893 P0AEX3 kgtP Alpha-ketoglutarate permease yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9.3817 10.067 2 0.00026047 1961 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 115.7 108.47 494980000 52680000 43398000 46143000 4458100 16057000 6900200 6347600 7281300 7668600 10649000 0 12651000 32811000 24463000 15964000 0 4780300 0 55628000 50963000 59487000 14711000 11201000 10741000 593 893 578 11697;11698;11699;11700;11701;11702;11703;11704;11705;11706;11707;11708;11709;11710;11711;11712;11713;11714;11715;11716;11717;11718 7178;7179;7180;7181;7182;7183;7184;7185;7186;7187;7188 7184 10 AESTVTADSK Acetyl (Protein N-term) 1049.4877 0.48768378 893 P0AEX3 kgtP Alpha-ketoglutarate permease yes yes 1 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.707 16.297 2 0.01018 4535 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 62.823 59.985 62548000 11376000 7900000 10264000 6525400 5234900 5303300 0 0 0 2093600 2458000 1953400 0 3211300 3453600 0 0 0 0 0 0 1465800 1309200 0 594 893 578 11719;11720;11721;11722;11723;11724;11725;11726;11727;11728;11729;11730;11731 7189;7190;7191 7189 1 AETASPEVMADCPR Unmodified 1532.6599 0.65992761 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.463 20.686 2 3.1477E-06 6544 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 121.08 121.08 121410000 9603800 12968000 10946000 2625100 2647100 3133100 5378800 6637800 6164400 4504000 3036900 3011800 4834800 6098000 5150000 0 0 0 11238000 9414400 8633100 1538200 1986800 1860400 595 1115 579 11732;11733;11734;11735;11736;11737;11738;11739;11740;11741;11742;11743;11744;11745;11746;11747;11748;11749;11750;11751;11752 7192;7193;7194 7194 3 AETECQNTEYQQLLDIK Unmodified 2081.9575 0.95754942 13 CON__P13645 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 40.094 38.177 2;3 5.7544E-31 14905 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 229.97 220.45 127030000 0 0 0 9753900 13334000 6938400 0 0 0 11399000 8733100 10249000 0 0 0 3988300 0 0 0 0 0 20727000 21837000 20074000 + 596 13 580 11753;11754;11755;11756;11757;11758;11759;11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771 7195;7196;7197;7198;7199;7200;7201;7202;7203;7204;7205;7206 7198 9 AETLYYIVK Unmodified 1098.5961 0.59611202 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.357 31.692 2 0.0038193 15293 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 80.229 78.626 200400000 63467000 0 0 3571400 0 1863000 15404000 15198000 18258000 4408800 2945400 0 11650000 7519600 8540400 0 0 0 15588000 13541000 16076000 0 0 2367800 597 734 581 11772;11773;11774;11775;11776;11777;11778;11779;11780;11781;11782;11783;11784;11785;11786 7207;7208;7209;7210;7211;7212;7213;7214 7209 7 AETNIQYEGR Unmodified 1179.552 0.55201537 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.141 14.739 2 6.765E-09 4715 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 189.38 158.77 669430000 45360000 39756000 39036000 10726000 9762300 11605000 44220000 38751000 41926000 28459000 26211000 25789000 20714000 23486000 24402000 4958700 5849200 3994000 55625000 62955000 51746000 15695000 17652000 20754000 598 252 582 11787;11788;11789;11790;11791;11792;11793;11794;11795;11796;11797;11798;11799;11800;11801;11802;11803;11804;11805;11806;11807;11808;11809;11810 7215;7216;7217;7218;7219;7220;7221;7222;7223;7224;7225;7226;7227;7228;7229;7230;7231;7232;7233 7222 19 AETVDGK Unmodified 718.34973 0.34973373 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.135 10.587 2 0.026414 1871 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 70.67 49.123 70308000 0 0 151660 0 0 0 0 2151000 0 0 11777000 2881900 450780 225620 256660 9176200 10520000 10561000 698230 0 0 12538000 8919800 0 599 1067 583 11811;11812;11813;11814;11815;11816;11817;11818;11819;11820;11821;11822;11823 7234 7234 1 AETWALADYYGK Unmodified 1386.6456 0.6455814 1939 P77756 queC 7-cyano-7-deazaguanine synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.702 38.009 2 2.2573E-05 18913 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.68 116.53 573120000 41570000 35593000 0 0 0 0 61062000 55083000 58078000 0 0 0 54129000 47026000 49571000 0 0 0 57860000 54273000 58876000 0 0 0 600 1939 584 11824;11825;11826;11827;11828;11829;11830;11831;11832;11833;11834 7235;7236;7237;7238;7239;7240;7241 7235 7 AETYFVALDDTGHVINSGYQTCAEYDTDPQAAK Unmodified 3649.6155 0.61548643 779 P0ADB1 osmE Osmotically-inducible lipoprotein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 2 2 2 2 2 2 1 1 1 1 1 44.029 42.153 3;4 4.0392E-25 16800 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 163.89 163.89 498180000 42292000 31285000 30985000 13595000 10446000 16437000 67059000 59054000 55499000 34811000 37476000 33195000 6132100 0 0 0 0 0 20208000 18885000 16588000 4234200 0 0 601 779 585 11835;11836;11837;11838;11839;11840;11841;11842;11843;11844;11845;11846;11847;11848;11849;11850;11851;11852;11853;11854;11855;11856;11857;11858 7242;7243;7244;7245;7246;7247;7248;7249;7250;7251;7252;7253;7254;7255;7256;7257;7258;7259;7260 7244 19 AEVEVDAK Unmodified 859.42871 0.42871234 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.012 12.747 2 0.033002 3374 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.342 45.516 1382200000 71179000 84839000 60426000 0 0 0 111170000 103730000 99654000 67534000 0 64534000 108820000 102130000 111480000 0 0 0 140110000 135490000 121130000 0 0 0 602 882 586 11859;11860;11861;11862;11863;11864;11865;11866;11867;11868;11869;11870;11871;11872 7261;7262;7263;7264;7265;7266;7267;7268;7269 7268 0 AEVMDAVAPGGLGGTYAGNPIACVAALEVLK Unmodified 3013.5253 0.52527862 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 55.123 53.628 3 3.2841E-09 26561 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.73 92.447 196660000 56420000 55019000 47452000 0 0 0 0 12995000 16544000 0 0 0 0 0 0 0 0 0 0 8226600 0 0 0 0 603 1194 587 11873;11874;11875;11876;11877;11878 7270;7271 7271 2 AEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMAR Unmodified 3824.7907 0.79069038 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.849 54.391 4 2.3631E-18 26066 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 132.17 130.77 273730000 17421000 15086000 14635000 0 0 0 16919000 0 21916000 0 0 0 35902000 36850000 39783000 0 0 0 24209000 26899000 24109000 0 0 0 604 1184 588 11879;11880;11881;11882;11883;11884;11885;11886;11887;11888;11889 7272;7273;7274;7275;7276;7277 7275 6 AEVTGSGK Unmodified 747.37628 0.37628284 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 5.4034 6.2272 2 0.001485 1052 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 108.46 81.982 1251600000 424260000 0 294970000 0 0 0 89612000 86790000 0 0 0 0 0 129830000 0 0 0 0 0 16923000 209170000 0 0 0 605 1630 589 11890;11891;11892;11893;11894;11895;11896;11897;11898;11899;11900;11901 7278;7279;7280;7281;7282;7283;7284;7285;7286;7287 7281 10 AEVVAADER Unmodified 958.47197 0.47197413 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.978 12.822 2 0.00034096 3417 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.28 86.756 435370000 37880000 48134000 38907000 0 0 0 0 42139000 43626000 0 0 0 34350000 28249000 33778000 0 0 0 43795000 42403000 42112000 0 0 0 606 164 590 11902;11903;11904;11905;11906;11907;11908;11909;11910;11911;11912 7288;7289 7288 2 AEVVAHGR Unmodified 837.4457 0.4456998 985 P0AG48 rplU 50S ribosomal protein L21 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 7.8332 8.3788 2 0.000249 1935 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 150.02 123.91 2442800000 304800000 298360000 343860000 34416000 21199000 22925000 0 0 0 45687000 49726000 41739000 164960000 152080000 152980000 31904000 30863000 27172000 215320000 207140000 182440000 48659000 37710000 28828000 607 985 591 11913;11914;11915;11916;11917;11918;11919;11920;11921;11922;11923;11924;11925;11926;11927;11928;11929;11930;11931;11932;11933;11934 7290;7291;7292;7293;7294;7295;7296;7297;7298;7299;7300;7301;7302;7303;7304;7305;7306;7307;7308 7290 16 AEWHQLVADLQR Unmodified 1464.7474 0.74736113 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 2 2 2 2 34.154 32.723 2;3 0.0003076 15658 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.465 81.675 521110000 86465000 79157000 77262000 0 0 0 25304000 34257000 30986000 0 0 0 28970000 15206000 25850000 0 0 0 35145000 41365000 41144000 0 0 0 608 173 592 11935;11936;11937;11938;11939;11940;11941;11942;11943;11944;11945;11946;11947;11948;11949;11950;11951;11952;11953;11954;11955;11956 7309;7310;7311;7312 7309 4 AEWLSVLK Unmodified 944.53312 0.53311783 460 P0A8U2 yafD UPF0294 protein YafD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 40.359 38.682 2 0.0052359 18622 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.953 41.236 47017000 11842000 9494100 9024900 0 0 0 2990600 2575300 2695200 0 0 0 0 1292700 1289600 0 0 0 0 3128800 2684100 0 0 0 609 460 593 11957;11958;11959;11960;11961;11962;11963;11964;11965;11966 7313;7314;7315 7315 3 AEWSGEYISPYAEHGK Unmodified 1822.8162 0.81622856 461 P0A8U6 metJ Met repressor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.464 26.316 2;3 1.3089E-13 11807 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 198.57 198.51 825890000 91146000 86907000 72410000 0 0 0 82407000 84786000 85846000 0 0 0 45526000 48022000 49847000 0 0 0 58000000 62925000 58064000 0 0 0 610 461 594 11967;11968;11969;11970;11971;11972;11973;11974;11975;11976;11977;11978;11979;11980;11981;11982;11983;11984;11985;11986;11987;11988;11989;11990 7316;7317;7318;7319;7320;7321;7322;7323;7324;7325;7326;7327;7328;7329;7330;7331;7332;7333 7330 18 AEYDQMWQHR Unmodified 1362.5775 0.57751861 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 1 2 1 21.633 21.68 2;3 0.001397 9116 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 61.78 61.493 181050000 22881000 22682000 23383000 0 0 0 34248000 21376000 41195000 0 0 0 6700400 6827500 1758900 0 0 0 0 0 0 0 0 0 611 1440 595 11991;11992;11993;11994;11995;11996;11997;11998;11999;12000;12001;12002;12003;12004;12005 7334;7335;7336;7337 7335 2 AEYGEQR Unmodified 851.37735 0.37734547 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By MS/MS By MS/MS 1 1 10.45 11.148 2 0.0045086 2567 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.068 66.399 24305000 0 24305000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 612 1085 596 12006;12007 7338;7339 7339 2 AEYLESPTIDER Unmodified 1421.6674 0.66743906 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.803 26.596 2 4.0434E-18 12067 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 177.78 167.25 1177600000 112520000 96525000 94488000 2174100 2497500 1961700 105640000 104720000 101840000 13695000 9455700 11092000 0 94720000 86929000 38173000 21735000 27587000 119410000 112060000 0 6676500 5661800 8080800 613 536 597 12008;12009;12010;12011;12012;12013;12014;12015;12016;12017;12018;12019;12020;12021;12022;12023;12024;12025;12026;12027;12028;12029;12030;12031 7340;7341;7342;7343;7344;7345;7346;7347;7348;7349;7350;7351;7352;7353;7354;7355;7356;7357 7350 18 AEYLESPTIDEREQEVLVR Unmodified 2275.1332 0.1332056 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 34.923 33.529 2;3 3.8808E-15 11296 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 156.22 155.56 180250000 0 0 0 2054700 0 0 0 0 0 10344000 10100000 13346000 0 0 0 49722000 36957000 38151000 0 0 0 4966700 6052400 8553000 614 536 598 12032;12033;12034;12035;12036;12037;12038;12039;12040;12041;12042 7358;7359;7360;7361;7362;7363;7364;7365;7366;7367 7360 9 AEYLLSLHGFDLASEQHTVR Unmodified 2285.144 0.14404506 261 P0A6L9 hscB Co-chaperone protein HscB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 40.405 38.761 3;4 1.9659E-18 18806 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 170.06 161.67 1041700000 95524000 77252000 80570000 0 0 0 79093000 52219000 65284000 0 0 0 78902000 89275000 85666000 0 0 0 113560000 112130000 112200000 0 0 0 615 261 599 12043;12044;12045;12046;12047;12048;12049;12050;12051;12052;12053;12054;12055;12056;12057;12058;12059;12060;12061;12062;12063;12064;12065 7368;7369;7370;7371;7372;7373;7374;7375;7376;7377;7378;7379;7380;7381;7382;7383;7384;7385;7386;7387;7388;7389 7380 21 AEYQELLAVSR Unmodified 1277.6616 0.66156582 1367 P31441 ade Adenine deaminase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.889 33.432 2 0.0025996 15297 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 85.533 75.752 104690000 5694800 6745200 4985000 0 0 0 9844000 10114000 10093000 0 0 0 8885500 9704500 6771500 0 0 0 11471000 10967000 9410100 0 0 0 616 1367 600 12066;12067;12068;12069;12070;12071;12072;12073;12074;12075;12076;12077 7390;7391 7391 0 AEYSPAFFGEELFAELR Unmodified 1974.9363 0.9363437 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.221 46.928 3 0.16703 22743 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 9.5303 5.8105 344880000 94890000 92423000 91281000 0 0 0 12158000 0 11988000 0 0 0 3910800 6426200 6067000 0 0 0 9581300 5858200 10294000 0 0 0 617 1937 601 12078;12079;12080;12081;12082;12083;12084;12085;12086;12087;12088 7392 7392 1 AEYTPHVDTGDYIIVLNADK Unmodified 2233.0903 0.090278155 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 1 2 42.341 40.562 2;3 5.0302E-68 19686 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 303.47 292.75 5446400000 741930000 730990000 711340000 1392100 20326000 14129000 198410000 183020000 181410000 37493000 33442000 30507000 314640000 308000000 307770000 16528000 24592000 0 483990000 487070000 508530000 38180000 37576000 35119000 618 569 602 12089;12090;12091;12092;12093;12094;12095;12096;12097;12098;12099;12100;12101;12102;12103;12104;12105;12106;12107;12108;12109;12110;12111;12112;12113;12114;12115;12116;12117;12118;12119;12120;12121;12122;12123;12124;12125;12126;12127;12128 7393;7394;7395;7396;7397;7398;7399;7400;7401;7402;7403;7404;7405;7406;7407;7408;7409;7410;7411;7412;7413;7414;7415;7416;7417;7418;7419;7420;7421;7422;7423;7424;7425 7411 33 AEYTPHVDTGDYIIVLNADKVAVTGNK Unmodified 2902.4713 0.47125244 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 42.417 40.606 4 0.04008 14322 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 38.006 35.811 15179000 0 0 0 3410300 3542300 2953800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5272400 0 619 569 603 12129;12130;12131;12132 7426;7427;7428 7428 3 AEYVVILAGDHIYK Unmodified 1589.8453 0.84534384 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.662 35.051 3 0.0023794 17168 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 62.68 43.847 671140000 54363000 52118000 45082000 0 0 0 90734000 102290000 97697000 0 0 0 37650000 51164000 41323000 0 0 0 36262000 31271000 30571000 0 0 607620 620 283 604 12133;12134;12135;12136;12137;12138;12139;12140;12141;12142;12143;12144;12145 7429;7430;7431;7432;7433;7434;7435;7436;7437;7438;7439;7440 7431 12 AFAAGVTPAQCFEMLALIR Unmodified 2065.0489 0.048887808 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.916 53.475 2 1.6887E-17 26446 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 198.49 174.64 333930000 82312000 80139000 71209000 0 919570 1220900 0 12211000 14194000 0 0 0 13112000 10831000 9489100 0 0 0 15419000 10718000 12158000 0 0 0 621 404 605 12146;12147;12148;12149;12150;12151;12152;12153;12154;12155;12156;12157;12158 7441;7442;7443 7442 3 AFAAMHK Unmodified 774.38468 0.38467945 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.292 12.137 2 0.037838 3092 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 65.263 38.142 1353400000 232730000 221720000 192910000 0 0 0 0 87294000 89726000 0 0 0 87022000 97708000 76117000 0 0 0 93185000 88173000 86836000 0 0 0 622 31 606 12159;12160;12161;12162;12163;12164;12165;12166;12167;12168;12169 7444 7444 1 AFAASNELEVNATHK Unmodified 1600.7845 0.7845345 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 1 1 2 1 2 1 1 2 3 1 20.537 20.958 2;3 5.0023E-20 8036 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 257.8 256.68 1246400000 313160000 314780000 285890000 0 0 691490 61644000 64367000 62071000 0 0 0 12185000 14203000 11940000 0 0 0 36349000 40542000 28604000 0 0 0 623 1254 607 12170;12171;12172;12173;12174;12175;12176;12177;12178;12179;12180;12181;12182;12183;12184;12185;12186;12187;12188;12189;12190;12191;12192 7445;7446;7447;7448;7449;7450;7451;7452;7453;7454;7455;7456;7457;7458;7459 7457 14 AFADIVK Unmodified 762.42759 0.42759012 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 24.889 23.791 2 0.030055 10733 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 66.993 34.064 521980000 109760000 92963000 86661000 1416800 1099900 1271600 29868000 31835000 28424000 1280900 1317400 1375400 12462000 12579000 10628000 0 0 0 32937000 36530000 25872000 1263400 1323500 1110300 624 106 608 12193;12194;12195;12196;12197;12198;12199;12200;12201;12202;12203;12204;12205;12206;12207;12208;12209;12210;12211;12212;12213;12214 7460;7461;7462;7463;7464;7465 7461 6 AFAEAYR Unmodified 826.39735 0.39735263 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.661 16.39 2 0.0023929 5631 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.08 59.027 440330000 35347000 33370000 28344000 381900 552430 408830 38771000 46959000 37769000 716060 1384200 0 37276000 24182000 29137000 0 0 0 44593000 42340000 38800000 0 0 0 625 289 609 12215;12216;12217;12218;12219;12220;12221;12222;12223;12224;12225;12226;12227;12228;12229;12230;12231 7466;7467;7468;7469;7470 7467 5 AFAENWLGK Unmodified 1034.5185 0.5185304 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.623 33.005 2 0.0012413 16183 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.55 46.426 7822600000 1011600000 1030600000 815330000 2394300 2809700 2855700 296470000 300320000 304680000 0 2278700 1827100 429230000 414290000 369370000 0 0 0 936880000 967460000 925310000 4847900 0 4097600 626 392 610 12232;12233;12234;12235;12236;12237;12238;12239;12240;12241;12242;12243;12244;12245;12246;12247;12248;12249;12250 7471;7472;7473;7474;7475;7476;7477;7478;7479;7480;7481;7482;7483;7484 7471 14 AFAENWLGKR Unmodified 1190.6196 0.61964142 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 26.647 25.197 3 0.0060691 8215 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 64.711 61.979 15213000 0 0 0 2223400 1891300 2450400 0 0 0 1085600 0 625250 0 0 0 0 0 0 0 0 0 1960500 2220200 2755800 627 392 611 12251;12252;12253;12254;12255;12256;12257;12258 7485;7486 7486 2 AFALAGLR Unmodified 817.48102 0.48102268 138 P06986 hisC Histidinol-phosphate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.829 31.398 2 0.00026561 14876 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 149.06 127.51 292470000 41917000 37890000 33836000 0 0 0 21361000 20988000 21240000 0 0 0 20176000 16468000 18156000 0 0 0 17075000 20939000 22420000 0 0 0 628 138 612 12259;12260;12261;12262;12263;12264;12265;12266;12267;12268;12269;12270 7487;7488;7489;7490;7491;7492;7493;7494;7495;7496;7497;7498 7491 12 AFASDNATVVIGTSLDPDMNDELR Unmodified 2550.1908 0.19079684 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 1 3 3 3 2 1 1 1 1 1 1 2 1 1 1 50.673 49.398 2;3 2.8399E-50 19653 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 243.69 231.77 204230000 7995400 0 6135900 5721600 6477900 0 10589000 3640600 0 34998000 30323000 28003000 15576000 9350700 2817400 2405200 1799500 1608100 11039000 11413000 7139400 4466900 2731500 0 629 502 613 12271;12272;12273;12274;12275;12276;12277;12278;12279;12280;12281;12282;12283;12284;12285;12286;12287;12288;12289;12290;12291;12292;12293;12294;12295;12296;12297;12298;12299;12300 7499;7500;7501;7502;7503;7504;7505;7506 7502 8 AFASLNDMVSWCHHLPGEQGR Unmodified 2411.0899 0.089917775 281 P0A6U5 rsmG Ribosomal RNA small subunit methyltransferase G yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.305 38.756 4 0.00011542 19193 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 70.99 70.783 327330000 24029000 22064000 20948000 0 0 817840 25007000 29647000 24785000 0 0 0 26716000 29320000 23170000 1491400 0 0 35354000 33313000 30668000 0 0 0 630 281 614 12301;12302;12303;12304;12305;12306;12307;12308;12309;12310;12311;12312;12313;12314 7507;7508;7509;7510;7511;7512;7513 7509 7 AFATGLPVFMVNTNTWQTSLSLQSFNLEVPVDDHER Unmodified 4062.9786 0.97856622 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.391 53.907 3 2.4205E-18 25773 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 133.25 131.97 309080000 16780000 13017000 14224000 0 0 0 34718000 30779000 27543000 0 0 0 39795000 0 32514000 0 0 0 34321000 30893000 34492000 0 0 0 631 539 615 12315;12316;12317;12318;12319;12320;12321;12322;12323;12324;12325 7514 7514 1 AFAYGLK Unmodified 768.41703 0.41702544 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 23.461 22.744 2 0.068585 9476 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 59.641 48.526 65201000 0 0 6570700 0 0 0 7623200 0 8916900 0 0 0 6334500 5615500 4428600 0 0 0 8743700 7585300 9383000 0 0 0 632 1388 616 12326;12327;12328;12329;12330;12331;12332;12333;12334 7515;7516;7517;7518;7519;7520;7521;7522 7521 7 AFAYGLKPIVVINK Unmodified 1531.9126 0.91263555 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 2 2 2 2 3 1 2 3 2 3 2 2 2 1 37.637 35.906 2;3 5.4443E-11 17737 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 215.93 215.93 2558800000 162460000 164310000 158530000 2219400 2248700 2013800 261280000 291730000 253310000 2701000 0 0 185560000 193320000 179880000 0 0 0 262380000 219720000 209720000 0 3964300 3446800 633 1388 617 12335;12336;12337;12338;12339;12340;12341;12342;12343;12344;12345;12346;12347;12348;12349;12350;12351;12352;12353;12354;12355;12356;12357;12358;12359;12360;12361;12362;12363;12364;12365;12366;12367;12368;12369;12370;12371;12372 7523;7524;7525;7526;7527;7528;7529;7530;7531;7532;7533;7534;7535;7536;7537;7538;7539;7540;7541;7542;7543;7544;7545;7546;7547;7548;7549 7527 27 AFCSGGDQK Unmodified 968.40218 0.40218001 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 2 2 2 2 2 1 1 2 2 2 1 2 1 10.641 11.374 1;2 0.0001668 2667 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.47 129.47 1419100000 100390000 81435000 81814000 32100000 34540000 33830000 126630000 119600000 125190000 0 0 0 91357000 89998000 86757000 0 2289200 1971800 98225000 92297000 85243000 45498000 50459000 39512000 634 679 618 12373;12374;12375;12376;12377;12378;12379;12380;12381;12382;12383;12384;12385;12386;12387;12388;12389;12390;12391;12392;12393;12394;12395;12396;12397;12398;12399;12400;12401;12402;12403;12404;12405;12406 7550;7551;7552;7553;7554;7555;7556;7557;7558;7559;7560 7550 11 AFCWLLHK Unmodified 1073.5481 0.54805639 1973 Q47147 yafJ Putative glutamine amidotransferase YafJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 33.237 31.754 3 0.041753 15485 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 45.081 40.998 60801000 7253000 6260600 6487500 0 0 0 4441800 8092500 6503600 0 0 0 2876600 0 0 0 0 0 6472900 6086500 6325900 0 0 0 635 1973 619 12407;12408;12409;12410;12411;12412;12413;12414;12415;12416;12417 7561;7562;7563;7564;7565;7566;7567;7568 7562 8 AFDDVMAGK Unmodified 952.43242 0.43241751 858 P0AEG6 dsbC Thiol:disulfide interchange protein DsbC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.26 23.287 2 0.0010569 10197 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.302 69.452 782810000 64538000 55892000 59443000 690390 799360 861870 76044000 70538000 74853000 0 1488900 2235300 52687000 62591000 54470000 0 0 0 67491000 61305000 73583000 1154400 1051300 1093100 636 858 620 12418;12419;12420;12421;12422;12423;12424;12425;12426;12427;12428;12429;12430;12431;12432;12433;12434;12435;12436;12437 7569;7570;7571;7572;7573;7574;7575;7576;7577;7578;7579;7580 7574 12 AFDESIEIGVMVETPAAATIAR Unmodified 2290.1515 0.1514982 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 1 2 1 1 54.118 52.658 2;3 5.8787E-35 26126 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 277.52 274.82 326340000 11527000 8573100 21592000 0 0 0 45543000 30893000 32516000 0 0 0 26138000 42216000 24342000 0 0 0 31978000 30158000 20863000 0 0 0 637 192 621 12438;12439;12440;12441;12442;12443;12444;12445;12446;12447;12448;12449;12450;12451;12452;12453;12454;12455 7581;7582;7583;7584;7585;7586;7587;7588;7589;7590;7591 7581 7 AFDFACLPNEGVGLAR Unmodified 1735.8352 0.83518986 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 1 2 1 1 1 1 1 1 1 48.688 47.426 2;3 6.5821E-14 23063 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 210.91 204.25 2780600000 278170000 291180000 259380000 22795000 23543000 26234000 182500000 179230000 167160000 53675000 50712000 40144000 143380000 153460000 149540000 3521500 10513000 2553600 230200000 226540000 215010000 23029000 25702000 22389000 638 1210 622 12456;12457;12458;12459;12460;12461;12462;12463;12464;12465;12466;12467;12468;12469;12470;12471;12472;12473;12474;12475;12476;12477;12478;12479;12480;12481;12482;12483;12484;12485;12486;12487;12488;12489;12490;12491;12492;12493 7592;7593;7594;7595;7596;7597;7598;7599;7600;7601;7602;7603;7604;7605;7606;7607;7608;7609;7610;7611;7612;7613;7614 7603 23 AFDGYWGTKPQIDTLVFSITPDASVR Unmodified 2883.4443 0.44430941 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 3 3 3 1 1 1 1 1 1 1 2 1 1 53.997 52.571 2;3;4 1.9532E-40 25685 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 272.8 272.4 4054400000 1372800000 1249800000 1137200000 0 4354700 0 31134000 32830000 33843000 0 0 0 21487000 15081000 14859000 0 0 0 57112000 38865000 45045000 0 0 0 639 1219 623 12494;12495;12496;12497;12498;12499;12500;12501;12502;12503;12504;12505;12506;12507;12508;12509;12510;12511;12512;12513 7615;7616;7617;7618;7619;7620;7621;7622;7623 7622 9 AFDLGITHFDLANNYGPPPGSAEENFGR Unmodified 3005.3944 0.3943991 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.771 49.432 3 3.9584E-16 24030 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.52 145.36 289770000 61876000 53986000 45093000 0 0 0 26256000 22633000 21692000 0 0 0 10004000 9158900 10177000 0 0 0 11176000 10614000 7107800 0 0 0 640 1958 624 12514;12515;12516;12517;12518;12519;12520;12521;12522;12523;12524;12525 7624;7625;7626;7627 7627 4 AFDLNLR Unmodified 847.4552 0.45520186 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 32.543 31.296 2 0.016885 15162 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 80.294 48.991 409790000 0 0 0 0 0 0 125780000 100830000 95117000 0 0 0 0 44032000 43337000 0 0 698350 0 0 0 0 0 0 641 520 625 12526;12527;12528;12529;12530;12531 7628 7628 1 AFDQIDNAPEEK Unmodified 1375.6256 0.62557424 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 5 2 2 2 5 3 5 1 2 2 3 3 3 2 2 2 4 3 4 1 2 2 21.267 21.427 1;2;3 7.3135E-61 8657 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 327.05 301.43 86689000000 4307000000 4129400000 4233300000 68460000 74023000 67411000 8857000000 7929900000 7551900000 52347000 74642000 71981000 8030400000 7138500000 6823400000 62080000 38573000 35444000 8916800000 9138000000 8920100000 60677000 51584000 56526000 642 1048 626 12532;12533;12534;12535;12536;12537;12538;12539;12540;12541;12542;12543;12544;12545;12546;12547;12548;12549;12550;12551;12552;12553;12554;12555;12556;12557;12558;12559;12560;12561;12562;12563;12564;12565;12566;12567;12568;12569;12570;12571;12572;12573;12574;12575;12576;12577;12578;12579;12580;12581;12582;12583;12584;12585;12586;12587;12588;12589;12590;12591;12592;12593;12594;12595;12596;12597;12598;12599;12600 7629;7630;7631;7632;7633;7634;7635;7636;7637;7638;7639;7640;7641;7642;7643;7644;7645;7646;7647;7648;7649;7650;7651;7652;7653;7654;7655;7656;7657;7658;7659;7660;7661;7662;7663;7664;7665;7666;7667;7668;7669;7670;7671;7672;7673;7674;7675;7676;7677;7678;7679;7680;7681;7682;7683;7684;7685;7686;7687;7688;7689;7690;7691;7692;7693;7694;7695;7696 7665 64 AFDTRPEVK Unmodified 1061.5506 0.55055881 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 2 2 1 1 1 2 3 2 1 1 1 2 1 1 1 2 1 3 1 2 13.193 13.762 2;3 0.0011017 3518 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 105.1 75.94 770170000 15318000 27389000 24204000 11699000 7898700 8943300 68463000 66556000 68790000 48196000 40919000 44070000 51136000 43273000 32179000 8941100 3006100 4224800 45311000 64563000 40803000 21416000 6613900 16257000 643 146 627 12601;12602;12603;12604;12605;12606;12607;12608;12609;12610;12611;12612;12613;12614;12615;12616;12617;12618;12619;12620;12621;12622;12623;12624;12625;12626;12627;12628;12629;12630;12631;12632;12633;12634;12635;12636;12637;12638 7697;7698;7699;7700;7701;7702;7703;7704;7705;7706;7707;7708;7709;7710;7711;7712;7713;7714;7715;7716 7700 18 AFEADCNCELK Unmodified 1355.5486 0.54858625 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.034 19.6 2 6.7604E-08 7451 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 175.51 175.51 180400000 0 4003800 2783900 0 0 0 19076000 16770000 17030000 0 0 0 13955000 13999000 13172000 0 0 0 26032000 24661000 28923000 0 0 0 644 1371 628 12639;12640;12641;12642;12643;12644;12645;12646;12647;12648;12649 7717;7718;7719;7720;7721;7722;7723;7724;7725 7721 9 AFEDAVVDTLMIK Unmodified 1450.7378 0.73776723 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 1 2 2 2 1 1 2 2 2 2 2 2 1 51.912 50.635 2;3 1.0797E-05 23887 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 118.4 112.1 485670000 39131000 32994000 26151000 2415400 2339300 2153000 35901000 36949000 35029000 0 4226900 5960400 33744000 31461000 26905000 0 0 0 55552000 55857000 55499000 0 3401600 0 645 121 629 12650;12651;12652;12653;12654;12655;12656;12657;12658;12659;12660;12661;12662;12663;12664;12665;12666;12667;12668;12669;12670;12671;12672;12673;12674;12675;12676;12677;12678;12679 7726;7727;7728;7729;7730;7731;7732;7733;7734;7735 7734 10 AFEHTAAYDSMIANYFGSMVPAYHGESK Unmodified 3093.3637 0.3636926 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 2 1 2 2 2 49.966 48.584 3;4 6.0109E-16 23862 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.92 138.92 1070300000 334800000 262410000 268330000 1147700 1348400 1011300 13332000 12425000 9877500 0 0 0 16289000 19569000 18975000 0 0 0 33935000 38981000 37923000 0 0 0 646 1111 630 12680;12681;12682;12683;12684;12685;12686;12687;12688;12689;12690;12691;12692;12693;12694;12695;12696;12697;12698;12699;12700;12701 7736;7737;7738;7739;7740;7741;7742;7743;7744;7745;7746;7747 7739 12 AFELIQVPVK Unmodified 1142.6699 0.66994566 1270 P25740 rfaG Lipopolysaccharide core biosynthesis protein RfaG yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.219 41.483 2 0.068546 20289 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 50.04 12.484 67493000 6446500 5965100 5116800 0 0 0 4741700 4308800 3498500 3547600 3380300 3356900 4147700 3699800 4250100 0 0 0 3623000 5026400 6384100 0 0 0 647 1270 631 12702;12703;12704;12705;12706;12707;12708;12709;12710;12711;12712;12713;12714;12715;12716 7748;7749 7749 0 AFEMGWR Unmodified 895.40106 0.4010578 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 31.557 30.43 2 0.0045644 14179 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.29 103.29 12795000 3892600 3377800 4545000 0 0 0 0 0 0 0 0 0 0 0 979350 0 0 0 0 0 0 0 0 0 648 219 632 12717;12718;12719;12720 7750 7750 1 AFEMGWRPDMSGVK Unmodified 1609.7381 0.73811836 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 2 2 1 1 1 35.683 34.176 2;3 8.5941E-11 16429 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 204.85 196.12 1186100000 230930000 257790000 228780000 1262000 1475200 1320900 54995000 62591000 68336000 0 0 0 49497000 48271000 44825000 0 0 0 40667000 53175000 42210000 0 0 0 649 219 633 12721;12722;12723;12724;12725;12726;12727;12728;12729;12730;12731;12732;12733;12734;12735;12736;12737;12738;12739;12740;12741 7751;7752;7753;7754;7755;7756;7757;7758;7759;7760 7755 10 AFEQCAGFLR Unmodified 1197.5601 0.56007764 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.047 29.579 2 0.0001695 14204 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.08 120.51 588970000 51152000 47359000 35482000 961130 864150 805240 47701000 46891000 51085000 0 1940600 1173400 37522000 43733000 38500000 0 0 467470 58405000 63187000 59137000 1029600 882760 697130 650 1586 634 12742;12743;12744;12745;12746;12747;12748;12749;12750;12751;12752;12753;12754;12755;12756;12757;12758;12759;12760;12761;12762 7761;7762;7763;7764;7765;7766 7762 4 AFEVGGEVR Unmodified 962.48214 0.48214489 1430 P33644 yfiH Laccase domain protein YfiH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.641 21.009 2 0.0024586 8560 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.064 58.462 177850000 0 25927000 22181000 0 652120 0 14814000 19208000 15961000 0 0 1950600 11969000 12835000 8880900 0 0 0 14671000 11851000 16946000 0 0 0 651 1430 635 12763;12764;12765;12766;12767;12768;12769;12770;12771;12772;12773;12774;12775 7767;7768;7769;7770;7771;7772;7773 7767 2 AFEYLMTR Unmodified 1029.4954 0.49535211 1369 P31473 ravA ATPase RavA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.61 32.376 2 0.00023486 15652 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 150.84 146.16 87867000 7229000 6920900 6732900 0 0 0 10775000 10603000 11334000 0 0 0 5917900 4572000 5417600 2270100 0 1703300 4649000 5121700 4621600 0 0 0 652 1369 636 12776;12777;12778;12779;12780;12781;12782;12783;12784;12785;12786;12787;12788;12789 7774;7775;7776;7777;7778;7779;7780;7781;7782;7783;7784 7776 11 AFFANPVLTGAVDK Unmodified 1448.7664 0.76636524 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 43.657 42.091 2;3 1.0388E-05 19532 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 94.688 87.317 5258700000 289010000 271710000 249060000 0 0 0 550930000 625510000 575510000 2894900 0 0 476060000 453490000 456370000 0 0 0 427690000 447930000 432510000 0 0 0 653 1487 637 12790;12791;12792;12793;12794;12795;12796;12797;12798;12799;12800;12801;12802;12803;12804;12805;12806;12807;12808;12809;12810;12811;12812;12813;12814 7785;7786;7787;7788;7789;7790;7791;7792;7793;7794;7795;7796;7797;7798;7799;7800 7799 11 AFFDFNSMHMEPWDGPAGIVMSDGR Unmodified 2813.2036 0.2036269 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.697 53.249 3 2.337E-10 26155 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.2 123.18 549500000 129270000 110340000 110360000 0 0 0 23816000 28256000 17649000 0 0 0 16702000 23045000 18224000 0 0 0 23451000 27420000 20969000 0 0 0 654 218 638 12815;12816;12817;12818;12819;12820;12821;12822;12823;12824;12825;12826 7801;7802;7803 7803 3 AFFDSNNDDMLVK Unmodified 1514.6711 0.67114423 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.428 39.47 2 0.00034397 15489 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 83 73.665 183810000 0 0 0 0 1164300 0 15236000 13974000 13843000 6205500 5402300 5939100 16541000 15473000 15819000 0 0 0 20145000 20940000 20962000 3995100 4701300 3474700 655 1494 639 12827;12828;12829;12830;12831;12832;12833;12834;12835;12836;12837;12838;12839;12840;12841;12842 7804;7805 7805 2 AFFTELLAAGVK Unmodified 1265.702 0.70197407 246 P0A6H8 clsA Cardiolipin synthase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 52.522 51.151 2 0.0058874 20847 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 64.297 61.445 62904000 0 0 0 1639100 2575000 1484000 15445000 12066000 11893000 4214600 4761500 3761600 0 5064800 0 0 0 0 0 0 0 0 0 0 656 246 640 12843;12844;12845;12846;12847;12848;12849;12850;12851;12852 7806 7806 1 AFGESLVAYRPPIDTR Unmodified 1790.9315 0.93153309 1157 P19319 narZ Respiratory nitrate reductase 2 alpha chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 37.415 35.326 3 0.11878 14009 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 26.365 23.387 42933000 8453900 0 4346800 0 0 0 6771500 8809300 7238000 4355500 2957900 0 0 0 0 0 0 0 0 0 0 0 0 0 657 1157 641 12853;12854;12855;12856;12857;12858;12859 7807 7807 1 AFGGGADFVMLGGMLAGHEESGGR Unmodified 2322.0521 0.052135285 1623 P60560 guaC GMP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 50.461 49.074 2;3 4.1927E-12 23009 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 144.29 141.73 2120100000 155400000 131240000 111230000 0 0 0 147920000 149810000 139280000 0 0 0 197820000 165150000 186740000 0 0 0 249350000 241510000 244690000 0 0 0 658 1623 642 12860;12861;12862;12863;12864;12865;12866;12867;12868;12869;12870;12871;12872;12873;12874;12875;12876;12877;12878;12879;12880;12881;12882 7808;7809;7810;7811;7812;7813;7814;7815;7816;7817;7818;7819;7820;7821 7820 13 AFGQVAAHEAMALGIEK Unmodified 1741.8821 0.88214006 1342 P30178 ybiC Uncharacterized oxidoreductase YbiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 1 1 1 1 1 1 1 1 2 1 1 2 2 1 35.132 33.64 2;3 1.5608E-10 16100 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.23 153.51 366300000 76145000 63982000 43533000 0 0 0 27640000 27386000 27674000 1122300 1251400 0 10621000 13197000 14787000 0 0 519390 17272000 20342000 20116000 0 0 713050 659 1342 643 12883;12884;12885;12886;12887;12888;12889;12890;12891;12892;12893;12894;12895;12896;12897;12898;12899;12900;12901;12902;12903 7822;7823;7824;7825;7826;7827;7828;7829;7830 7827 7 AFGTGIR Unmodified 720.39187 0.39187332 1245 P24224 acpS Holo-[acyl-carrier-protein] synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 15.591 16.416 2 0.045433 5280 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 79.454 66.901 55141000 5318600 0 0 0 0 0 3856400 5372600 5429000 0 0 0 6077600 4757100 3596300 0 0 0 7262400 7413200 6057900 0 0 0 660 1245 644 12904;12905;12906;12907;12908;12909;12910;12911;12912;12913 7831;7832;7833;7834;7835;7836 7836 0 AFHGEVVDYATFR Unmodified 1510.7205 0.72047768 1840 P76243 yeaO Uncharacterized protein YeaO yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 3 2 1 1 1 2 2 1 1 1 2 29.959 28.677 2;3 2.6395E-05 13790 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.434 89.055 258970000 34958000 43055000 32711000 0 0 0 23708000 22899000 25912000 0 0 0 12694000 13093000 10152000 0 0 0 12534000 11565000 15690000 0 0 0 661 1840 645 12914;12915;12916;12917;12918;12919;12920;12921;12922;12923;12924;12925;12926;12927;12928;12929;12930;12931;12932 7837;7838;7839;7840;7841;7842;7843 7837 4 AFIAELMPK Unmodified 1018.5521 0.55213871 831 P0AE37 astA Arginine N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 40.51 39.071 2 0.0018229 18923 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.323 83.388 80088000 23463000 24676000 31949000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 662 831 646 12933;12934;12935 7844;7845;7846 7845 3 AFICSIK Unmodified 837.44186 0.44185998 973 P0AFZ1 sseB Protein SseB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 22.64 22.119 2 0.0053367 9017 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 100.07 93.68 591050000 35638000 30508000 31236000 0 0 0 48969000 49999000 54003000 0 0 703860 53686000 48675000 51812000 0 0 0 63001000 66350000 56474000 0 0 0 663 973 647 12936;12937;12938;12939;12940;12941;12942;12943;12944;12945;12946;12947;12948;12949 7847;7848;7849;7850;7851;7852;7853;7854 7852 8 AFIDFLQNTVMR Unmodified 1453.7388 0.73877028 791 P0ADK0 yiaF Uncharacterized protein YiaF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.467 53.031 2 9.8757E-25 26209 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 211.52 172.5 254070000 24046000 0 0 1317100 1933800 1992400 39100000 32056000 0 12070000 7511300 10645000 0 35050000 37540000 0 0 0 0 0 37055000 5929100 5087600 2737900 664 791 648 12950;12951;12952;12953;12954;12955;12956;12957;12958;12959;12960;12961;12962;12963;12964;12965;12966;12967;12968 7855;7856;7857;7858;7859;7860;7861;7862;7863;7864 7858 10 AFIDFLSEHVK Unmodified 1304.6765 0.6764876 1352 P30864 yafC Uncharacterized HTH-type transcriptional regulator YafC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.408 40.886 3 0.01471 16849 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 44.299 38.457 57993000 5351300 5496000 4629500 0 1138000 0 0 2497400 3050300 3918800 2184900 2778300 0 2704100 0 4600500 9211900 4515100 2747500 3169300 0 0 0 0 665 1352 649 12969;12970;12971;12972;12973;12974;12975;12976;12977;12978;12979;12980;12981;12982;12983 7865;7866;7867;7868 7868 4 AFIEENALK Unmodified 1033.5444 0.5444108 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.247 25.112 2 0.00045305 11372 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 109.86 96.903 1203200000 92982000 89145000 83620000 1251200 1499500 1374400 114920000 92701000 93539000 7544300 7632400 10247000 93262000 88254000 76994000 2909100 2179700 2378500 113700000 105520000 109490000 3843300 4291500 3886600 666 883 650 12984;12985;12986;12987;12988;12989;12990;12991;12992;12993;12994;12995;12996;12997;12998;12999;13000;13001;13002;13003;13004;13005;13006;13007 7869;7870;7871;7872;7873;7874;7875;7876;7877;7878;7879;7880 7872 12 AFIEVGQK Unmodified 890.48617 0.48616764 652 P0ABD8 accB Biotin carboxyl carrier protein of acetyl-CoA carboxylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 3 2 1 1 2 2 1 1 2 1 1 1 1 1 1 2 2 21.715 21.601 1;2 0.0034989 7473 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.626 58.076 3040300000 54001000 49920000 37067000 0 0 5058000 786140000 623580000 4320700 16663000 15666000 14005000 38352000 602180000 661630000 10026000 8087200 9423000 37022000 33907000 0 2009800 14528000 16743000 667 652 651 13008;13009;13010;13011;13012;13013;13014;13015;13016;13017;13018;13019;13020;13021;13022;13023;13024;13025;13026;13027;13028;13029;13030;13031;13032;13033;13034;13035;13036;13037 7881;7882;7883;7884;7885;7886;7887;7888;7889 7881 7 AFIGLELVPGTR Unmodified 1271.7238 0.72377215 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 48.97 47.617 2 2.6143E-06 23185 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 140.75 138.07 321330000 18689000 16257000 14415000 0 0 0 23106000 27472000 25668000 0 0 0 26449000 22918000 20696000 0 0 0 43094000 44693000 36388000 1488200 0 0 668 194 652 13038;13039;13040;13041;13042;13043;13044;13045;13046;13047;13048;13049;13050 7890;7891;7892;7893;7894;7895;7896;7897;7898;7899 7893 10 AFIMVLDSFGIGATEDAER Unmodified 2040.9826 0.98264196 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 55.081 53.631 2;3 1.9599E-14 26675 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.24 109.53 484030000 44504000 42344000 34393000 3887500 2045500 0 16485000 55726000 53006000 0 0 0 37505000 41200000 38394000 0 0 0 39598000 36547000 38400000 0 0 0 669 256 653 13051;13052;13053;13054;13055;13056;13057;13058;13059;13060;13061;13062;13063;13064;13065;13066;13067;13068;13069;13070;13071;13072;13073;13074;13075;13076 7900;7901;7902;7903;7904 7901 3 AFITDSK Unmodified 780.40177 0.4017693 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 1 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 15.196 15.814 1;2 0.0001932 4949 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 143.23 76.193 1594100000 97050000 99269000 95874000 4168100 4301800 3786100 83539000 14176000 85504000 9294100 8559800 6816200 135860000 111990000 114510000 9345500 8604900 7634300 206420000 206160000 218760000 22037000 20866000 19571000 670 1819 654 13077;13078;13079;13080;13081;13082;13083;13084;13085;13086;13087;13088;13089;13090;13091;13092;13093;13094;13095;13096;13097;13098;13099;13100;13101;13102;13103;13104;13105;13106;13107;13108;13109;13110;13111;13112;13113;13114;13115;13116 7905;7906;7907;7908;7909;7910;7911;7912;7913;7914;7915;7916;7917;7918;7919;7920;7921;7922;7923;7924;7925 7925 20 AFLCYNANK Unmodified 1099.5121 0.51206481 1458 P37146 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 22.872 22.36 2 0.0066986 9568 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.998 59.969 40083000 4310800 4987900 3157500 0 0 0 0 0 0 0 0 0 4381200 2150900 3056500 0 0 0 5407300 7066000 5565300 0 0 0 671 1458 655 13117;13118;13119;13120;13121;13122;13123;13124;13125 7926;7927 7927 2 AFLDMQDDNLPK Unmodified 1405.6548 0.65476588 618 P0AAY6 ybjN Uncharacterized protein YbjN yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.998 37.163 2 0.007674 15006 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 63.283 59.396 133470000 17214000 16931000 13291000 0 0 0 7037500 0 4393700 2758500 3485700 2289100 8089900 10088000 8349900 0 0 0 15574000 12517000 11451000 0 0 0 672 618 656 13126;13127;13128;13129;13130;13131;13132;13133;13134;13135;13136;13137;13138;13139 7928 7928 1 AFLEAENPQR Unmodified 1173.5778 0.57783619 1023 P0AGJ7 trmL tRNA (cytidine(34)-2'-O)-methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 21.107 21.519 2 0.00022148 8746 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.29 99.504 115920000 15943000 11365000 10938000 0 0 0 9438200 0 0 0 0 0 12961000 11944000 10546000 0 0 0 7759000 12905000 12115000 0 0 0 673 1023 657 13140;13141;13142;13143;13144;13145;13146;13147;13148;13149 7929;7930;7931;7932;7933 7930 4 AFLEFAAEDLGADYIATGHYVR Unmodified 2428.1699 0.16992546 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.037 50.776 3 1.3963E-15 24757 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.98 147.75 758720000 91937000 81894000 76696000 4609800 6741300 5315800 0 0 4115000 3820800 0 3501800 55125000 64397000 61427000 0 0 0 102540000 98084000 93505000 0 0 5003400 674 1272 658 13150;13151;13152;13153;13154;13155;13156;13157;13158;13159;13160;13161;13162;13163;13164;13165 7934;7935;7936;7937 7934 3 AFLGLPVGGIR Unmodified 1098.655 0.6549643 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 46.655 45.214 2 0.00013125 21833 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.89 104.3 605420000 180910000 184580000 146890000 0 741580 0 7806800 6910700 6728500 0 0 0 9673000 9425000 9437200 0 0 0 13398000 14808000 14116000 0 0 0 675 1412 659 13166;13167;13168;13169;13170;13171;13172;13173;13174;13175;13176;13177;13178 7938;7939;7940;7941;7942;7943;7944;7945;7946;7947;7948;7949 7946 12 AFLIDDAK Unmodified 891.47018 0.47018322 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.21 27.006 2 0.020189 12398 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 66.073 51.297 290420000 32550000 38854000 36518000 0 0 501600 0 11660000 12102000 0 0 0 13727000 25417000 19984000 0 0 0 23859000 32879000 42369000 0 0 0 676 1650 660 13179;13180;13181;13182;13183;13184;13185;13186;13187;13188;13189;13190 7950;7951;7952;7953;7954;7955;7956;7957;7958 7955 3 AFLNELAR Unmodified 932.50797 0.50796571 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.607 29.213 2 8.1081E-05 14126 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.89 138.1 938660000 45196000 46230000 33809000 9770200 9611700 10347000 98111000 93345000 101610000 43235000 44780000 51134000 40160000 38085000 40440000 6504100 5048100 5344500 51008000 56185000 56317000 18363000 17355000 16677000 677 122 661 13191;13192;13193;13194;13195;13196;13197;13198;13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209;13210;13211;13212;13213;13214 7959;7960;7961;7962;7963;7964;7965;7966;7967;7968;7969 7963 6 AFLPGSLVDVR Unmodified 1172.6554 0.65535823 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.446 41.686 2 2.4517E-05 20239 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.26 130.33 2077800000 0 303910000 248110000 1010000 583520 0 174590000 117550000 103590000 2850800 1938100 1807000 162140000 174870000 156330000 0 0 0 204540000 210220000 209840000 1713000 2210800 0 678 990 662 13215;13216;13217;13218;13219;13220;13221;13222;13223;13224;13225;13226;13227;13228;13229;13230;13231;13232;13233 7970;7971;7972;7973;7974;7975;7976;7977;7978;7979;7980;7981 7974 12 AFLPGSLVDVRPVR Unmodified 1524.8776 0.87764703 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 39.253 37.678 2;3 2.1779E-19 18068 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 212.72 212.72 12320000000 1325300000 1333000000 1228400000 70016000 74660000 71589000 611160000 616610000 556520000 161640000 142290000 124630000 686370000 643130000 662980000 261250000 135580000 171550000 977590000 1025200000 1107000000 110270000 116930000 106590000 679 990 663 13234;13235;13236;13237;13238;13239;13240;13241;13242;13243;13244;13245;13246;13247;13248;13249;13250;13251;13252;13253;13254;13255;13256;13257;13258;13259;13260;13261;13262;13263;13264;13265;13266;13267;13268;13269;13270;13271;13272;13273;13274;13275;13276;13277;13278;13279;13280;13281;13282 7982;7983;7984;7985;7986;7987;7988;7989;7990;7991;7992;7993;7994;7995;7996;7997;7998;7999;8000;8001;8002;8003;8004;8005;8006;8007;8008;8009;8010;8011;8012;8013;8014;8015;8016;8017;8018;8019;8020;8021;8022;8023;8024;8025;8026;8027;8028;8029 8023 48 AFLPGSLVDVRPVRDTLHLEGK Unmodified 2418.3383 0.33832819 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 2 2 2 40.179 38.69 4;5 0.00012375 13658 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 75.589 73.65 134620000 0 0 0 14992000 12353000 13968000 0 0 0 2990600 2745100 3588400 0 0 0 19835000 13394000 17678000 0 0 0 9127900 10868000 13082000 680 990 664 13283;13284;13285;13286;13287;13288;13289;13290;13291;13292;13293;13294;13295;13296;13297;13298;13299;13300;13301;13302 8030;8031;8032;8033;8034;8035;8036;8037;8038;8039;8040 8038 11 AFLQELQEASDR Unmodified 1405.6838 0.68375782 492 P0A962 ansA L-asparaginase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.534 35.819 2 2.236E-12 17169 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 199.67 196.32 573720000 50048000 53333000 49902000 0 700110 658700 40642000 46642000 38535000 0 0 0 36539000 37785000 38728000 0 0 0 56318000 60338000 60862000 0 1345900 1346300 681 492 665 13303;13304;13305;13306;13307;13308;13309;13310;13311;13312;13313;13314;13315;13316;13317;13318 8041;8042;8043;8044;8045;8046;8047;8048;8049;8050;8051;8052 8049 12 AFNEALPLTGVVLTK Unmodified 1571.8923 0.89229404 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 2 2 2 2 2 1 48.987 47.709 2;3 6.5209E-06 19089 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 121.04 117.28 575800000 6086700 3462600 3690300 10706000 10257000 11573000 4920700 3531500 5806300 64621000 55597000 66111000 0 3923800 3493400 13166000 8790000 7813100 67744000 63660000 63592000 33557000 35775000 27926000 682 1009 666 13319;13320;13321;13322;13323;13324;13325;13326;13327;13328;13329;13330;13331;13332;13333;13334;13335;13336;13337;13338;13339;13340;13341;13342;13343;13344;13345;13346;13347;13348;13349;13350;13351;13352 8053;8054;8055;8056;8057;8058;8059 8055 7 AFNEMQPIVDR Unmodified 1318.634 0.63397086 372 P0A7U7 rpsT 30S ribosomal protein S20 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.596 29.202 2 9.7393E-08 13682 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 173.37 169.8 8127800000 1199000000 1310300000 1120500000 21643000 23779000 23407000 352700000 316450000 304090000 53283000 60456000 60329000 483380000 496650000 444450000 35185000 24958000 26702000 517320000 578610000 558150000 39713000 36611000 40139000 683 372 667 13353;13354;13355;13356;13357;13358;13359;13360;13361;13362;13363;13364;13365;13366;13367;13368;13369;13370;13371;13372;13373;13374;13375;13376 8060;8061;8062;8063;8064;8065;8066;8067;8068;8069;8070;8071;8072;8073;8074;8075;8076 8065 17 AFNEMQPIVDR Oxidation (M) 1334.6289 0.62888548 372 P0A7U7 rpsT 30S ribosomal protein S20 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 1 2 2 1 2 1 22.346 22.01 2 5.7823E-06 8875 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 153.05 149.47 201430000 23517000 18698000 21344000 0 0 0 7399100 0 3589700 1915600 2607800 2420400 3700900 2789500 70800000 0 0 0 15613000 9366700 16512000 1157100 0 0 684 372 667 13377;13378;13379;13380;13381;13382;13383;13384;13385;13386;13387;13388;13389;13390;13391;13392;13393;13394;13395;13396;13397 8077;8078;8079;8080;8081;8082;8083;8084;8085;8086;8087;8088;8089;8090 8084 157 11 AFNEMTLVYAGDAR Unmodified 1556.7293 0.72932781 89 P04391;P06960 argI;argF Ornithine carbamoyltransferase chain I;Ornithine carbamoyltransferase chain F yes no 0 0 0 By MS/MS By matching By MS/MS 1 1 1 40.22 38.781 2 0.00026183 18728 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.93 101.02 21367000 7308000 7467900 6591000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 685 89 668 13398;13399;13400 8091;8092 8092 0 AFNIEQATFNDYMAK Unmodified 1761.8032 0.80322103 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.384 42.869 2 1.4304E-08 21344 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.42 162.27 321360000 47055000 48870000 42964000 0 0 0 33634000 28347000 29400000 0 0 0 21771000 21394000 19640000 0 0 0 8460100 9719400 10106000 0 0 0 686 427 669 13401;13402;13403;13404;13405;13406;13407;13408;13409;13410;13411;13412 8093;8094;8095;8096;8097;8098;8099 8093 6 AFNLDVQR Unmodified 961.49813 0.49812931 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.23 24.905 2 0.00010113 11449 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.91 142.18 440840000 0 0 0 0 0 0 63403000 60808000 64641000 8521400 7623700 7815400 38582000 35306000 40395000 0 0 0 36145000 36891000 32924000 3438000 0 4345500 687 1507 670 13413;13414;13415;13416;13417;13418;13419;13420;13421;13422;13423;13424;13425;13426 8100;8101;8102;8103;8104;8105;8106;8107;8108;8109;8110;8111 8104 12 AFNLLVVR Unmodified 930.56509 0.56508666 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.297 38.721 2 4.3266E-05 13128 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 172.39 155.84 1710000000 9939100 10575000 10906000 1988400 2233900 2184800 11432000 10681000 13486000 3475600 3266400 2595800 10347000 10211000 14402000 588910000 463190000 472730000 21991000 22155000 21271000 2053800 0 0 688 1005 671 13427;13428;13429;13430;13431;13432;13433;13434;13435;13436;13437;13438;13439;13440;13441;13442;13443;13444;13445;13446;13447;13448 8112;8113;8114;8115;8116;8117;8118;8119;8120;8121;8122;8123;8124;8125;8126 8113 15 AFNLPTK Unmodified 789.43849 0.43848916 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 22.019 21.968 2 0.0020271 9524 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 119.57 63.056 99421000 10996000 9835500 8231700 0 0 0 10062000 7875200 7347700 0 0 1519400 5742600 2959700 2794300 0 0 0 11179000 11788000 9088800 0 0 0 689 1116 672 13449;13450;13451;13452;13453;13454;13455;13456;13457;13458;13459;13460;13461;13462;13463;13464 8127;8128;8129;8130;8131;8132 8127 4 AFNVEGILCLPIQDSDK Unmodified 1917.9506 0.95061355 786 P0ADF8 ilvN Acetolactate synthase isozyme 1 small subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 54.185 52.767 2 1.5833E-12 25808 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.95 130.19 80085000 27861000 24659000 23625000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3940900 0 0 0 0 0 690 786 673 13465;13466;13467;13468 8133;8134 8134 0 AFPGLNGMDLAK Unmodified 1232.6223 0.62234354 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 40.641 39.118 2 2.1161E-05 18860 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.73 110.14 326890000 92930000 80888000 77036000 1081600 0 0 0 0 0 0 0 0 5189800 5395700 4569600 0 0 0 20483000 19247000 20065000 0 0 0 691 238 674 13469;13470;13471;13472;13473;13474;13475;13476;13477;13478 8135;8136;8137;8138 8138 3 AFPIIPCNLCGSQPNLQR Unmodified 2084.0295 0.02954935 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 45.06 43.588 2;3 1.0351E-06 21210 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.489 91.359 345390000 24374000 16827000 19016000 0 0 0 38522000 34723000 29226000 0 4863500 0 32398000 29773000 29640000 0 0 0 28555000 30601000 26872000 0 0 0 692 1812 675 13479;13480;13481;13482;13483;13484;13485;13486;13487;13488;13489;13490;13491;13492;13493;13494;13495;13496;13497;13498;13499;13500;13501;13502;13503 8139;8140;8141;8142 8139 4 AFQDMEAALR Unmodified 1150.5441 0.54409322 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.103 31.435 2 0.00012035 14359 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.61 124.67 161260000 20283000 13652000 0 799790 659850 915720 0 0 17528000 2611900 3071500 3054500 12215000 8803600 10205000 0 0 0 16075000 24687000 17991000 3155100 2604800 2945400 693 1197 676 13504;13505;13506;13507;13508;13509;13510;13511;13512;13513;13514;13515;13516;13517;13518;13519;13520;13521 8143;8144;8145;8146;8147;8148;8149;8150;8151;8152;8153;8154;8155 8154 13 AFQELNAIDVL Unmodified 1231.6449 0.64485312 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 1 2 2 1 1 1 54.954 53.513 1;2 8.6049E-05 26616 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.52 93.43 5959500000 353790000 338380000 343760000 4392200 5543000 4063000 515880000 470170000 463350000 4962700 3514000 3512600 659760000 584390000 599550000 0 0 0 407210000 610280000 578880000 2302200 2081000 3762000 694 634 677 13522;13523;13524;13525;13526;13527;13528;13529;13530;13531;13532;13533;13534;13535;13536;13537;13538;13539;13540;13541;13542;13543;13544;13545;13546;13547;13548;13549;13550 8156;8157;8158;8159;8160;8161;8162;8163;8164;8165;8166;8167;8168 8156 12 AFQLINEQHLEQLPMHEFLVR Unmodified 2591.3319 0.33186261 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 2 2 2 2 2 2 1 1 1 48.281 46.86 3;4 7.2469E-07 18739 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 97.058 96.117 213150000 5358300 5717000 4984500 0 0 0 24807000 11693000 13582000 4830700 9795300 9718700 12460000 13959000 12534000 0 0 0 23395000 25306000 22813000 4284000 4150900 3760600 695 143 678 13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561;13562;13563;13564;13565;13566;13567;13568;13569;13570;13571;13572;13573;13574;13575 8169;8170;8171;8172;8173;8174;8175 8170 7 AFQMMTSLGSLK Unmodified 1312.6519 0.65192911 769 P0AD57 ispB Octaprenyl-diphosphate synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.929 40.141 2 2.7016E-08 19970 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.19 165.12 452860000 31238000 36086000 29066000 587590 364000 380980 39966000 36694000 36541000 0 794960 827400 31948000 26273000 30584000 0 0 0 44093000 52455000 54965000 0 0 0 696 769 679 13576;13577;13578;13579;13580;13581;13582;13583;13584;13585;13586;13587;13588;13589;13590;13591;13592 8176;8177;8178;8179;8180;8181;8182;8183;8184;8185 8177 7 AFQQQLAEVAIAGFQPQFNK Unmodified 2234.1484 0.14840216 1199 P22525 ycbB Probable L,D-transpeptidase YcbB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.988 51.537 3 0.00010239 20993 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 68.525 64.173 40358000 0 0 0 0 0 0 5828800 5694500 8174300 4215000 4513700 3827600 0 0 0 0 0 0 2704600 0 5399400 0 0 0 697 1199 680 13593;13594;13595;13596;13597;13598;13599;13600 8186 8186 1 AFSGIVAGNVK Unmodified 1061.5869 0.58694431 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.82 23.831 2 0.0011638 10577 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 106.91 84.13 799630000 61521000 59345000 61382000 0 0 0 89177000 95723000 81788000 0 0 0 55155000 55397000 48804000 0 0 0 65637000 58662000 67043000 0 0 0 698 801 681 13601;13602;13603;13604;13605;13606;13607;13608;13609;13610;13611;13612 8187;8188;8189;8190;8191;8192;8193;8194;8195;8196;8197;8198 8191 11 AFSIDGPVLVDVVVAK Unmodified 1627.9185 0.91850879 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.206 51.774 2 2.9669E-11 18754 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 156.71 155.62 1445200000 223560000 201550000 182180000 12805000 10559000 11460000 191430000 181560000 177930000 7537600 7270400 6658400 33383000 29159000 34675000 0 0 0 43525000 42355000 47570000 0 0 0 699 147 682 13613;13614;13615;13616;13617;13618;13619;13620;13621;13622;13623;13624;13625;13626;13627;13628;13629;13630 8199;8200;8201;8202;8203;8204;8205;8206;8207;8208;8209;8210 8207 12 AFSILLK Unmodified 790.49528 0.49527576 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 36.88 35.132 1;2 0.003124 16304 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 128.75 128.75 5257900000 309320000 297310000 275360000 717650 1015100 671800 643580000 679070000 687840000 1749000 1780300 2065100 444830000 492470000 433780000 0 0 0 376610000 305970000 295470000 3156100 2739900 2419700 700 697 683 13631;13632;13633;13634;13635;13636;13637;13638;13639;13640;13641;13642;13643;13644;13645;13646;13647;13648;13649;13650;13651;13652;13653;13654;13655;13656;13657;13658;13659;13660;13661;13662;13663 8211;8212;8213;8214;8215;8216;8217;8218;8219;8220;8221;8222;8223;8224;8225;8226;8227;8228;8229;8230;8231;8232 8230 18 AFSQFLNLANTAEQYHSISPK Unmodified 2365.1703 0.17025981 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 1 2 45.401 43.964 2;3 1.6628E-27 21499 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 242.91 237.77 2677600000 410270000 398930000 344700000 0 2275600 0 215440000 245290000 222210000 0 0 0 120810000 132170000 116570000 0 0 0 167850000 162700000 138450000 0 0 0 701 43 684 13664;13665;13666;13667;13668;13669;13670;13671;13672;13673;13674;13675;13676;13677;13678;13679;13680;13681;13682;13683;13684;13685;13686;13687 8233;8234;8235;8236;8237;8238;8239;8240;8241;8242;8243;8244;8245;8246;8247;8248;8249 8244 13 AFSSYLGEDK Unmodified 1115.5135 0.5135046 1405 P33018 yeiG S-formylglutathione hydrolase YeiG yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 25.066 24.069 2 0.0002121 10535 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.15 113.33 206500000 44163000 40857000 34730000 0 0 0 15747000 13455000 12468000 0 0 0 4776500 3780400 4509100 0 0 0 12085000 8628000 10351000 0 945700 0 702 1405 685 13688;13689;13690;13691;13692;13693;13694;13695;13696;13697;13698;13699;13700 8250;8251;8252;8253;8254;8255 8253 6 AFTDAIK Unmodified 764.40685 0.40685468 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.639 20.129 2 0.0008957 7786 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 141.98 64.236 304340000 32302000 33349000 31796000 0 0 0 18885000 16800000 18440000 0 0 0 25389000 17512000 17161000 0 0 0 28126000 34058000 30521000 0 0 0 703 623 686 13701;13702;13703;13704;13705;13706;13707;13708;13709;13710;13711;13712 8256;8257;8258;8259;8260;8261;8262;8263;8264;8265;8266 8259 11 AFTDFFAR Unmodified 973.46577 0.46576654 302 P0A722 lpxA Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.615 40.738 2 1.0185E-06 19808 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 195.85 147.68 968120000 108500000 93599000 100060000 1563000 1408800 1481000 89257000 85954000 82340000 1971200 1391700 1546500 57771000 46185000 46834000 0 0 0 82325000 82586000 80153000 1353300 1835800 0 704 302 687 13713;13714;13715;13716;13717;13718;13719;13720;13721;13722;13723;13724;13725;13726;13727;13728;13729;13730;13731;13732 8267;8268;8269;8270;8271;8272;8273;8274;8275 8273 9 AFTGVGGTPLFIEK Unmodified 1435.7711 0.77111627 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.296 41.494 2 9.7563E-11 20215 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.94 152.11 2513400000 0 0 209450000 4636500 4929300 4541700 264580000 265330000 246640000 44778000 43400000 37713000 0 207360000 227810000 0 0 0 313660000 300560000 306370000 13737000 17851000 0 705 1227 688 13733;13734;13735;13736;13737;13738;13739;13740;13741;13742;13743;13744;13745;13746;13747;13748;13749 8276;8277;8278;8279;8280;8281;8282;8283;8284;8285 8280 10 AFTNYLPGFNIPMLPR Unmodified 1849.9549 0.95491107 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.477 53.282 2 1.8089E-13 26295 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 165.18 159.9 638280000 52580000 54705000 58936000 0 0 0 34359000 36538000 35610000 11785000 0 0 44702000 45287000 37577000 10862000 10200000 6341200 64349000 64956000 69495000 0 0 0 706 1348 689 13750;13751;13752;13753;13754;13755;13756;13757;13758;13759;13760;13761;13762;13763;13764;13765 8286;8287;8288 8286 3 AFTPFPPR Unmodified 931.49159 0.49158736 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 1 1 4 3 1 1 2 1 30.215 28.673 2 0.0014226 13421 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 108.98 101.63 136780000 0 0 0 0 0 0 25401000 25905000 19124000 0 0 0 0 0 17648000 0 0 0 24665000 0 24033000 0 0 0 707 784 690 13766;13767;13768;13769;13770;13771;13772;13773;13774;13775;13776;13777;13778;13779;13780;13781;13782;13783;13784;13785;13786;13787;13788 8289;8290;8291;8292;8293;8294;8295;8296;8297;8298;8299;8300;8301;8302;8303;8304;8305;8306;8307;8308;8309;8310;8311;8312;8313;8314;8315;8316 8298 27 AFTSEEFTHFLEELTK Unmodified 1927.9204 0.92035928 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 3 3 3 1 1 1 2 2 2 1 1 1 3 3 3 1 1 1 54.875 53.523 2;3 2.9173E-103 25072 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 417.19 381.67 46025000000 2904500000 2581700000 2498900000 40280000 32995000 36899000 5312200000 5202900000 5222300000 39484000 44012000 32635000 3490200000 3138200000 3827300000 28761000 48980000 63165000 3911900000 3869400000 3641000000 17605000 22594000 16800000 708 270 691 13789;13790;13791;13792;13793;13794;13795;13796;13797;13798;13799;13800;13801;13802;13803;13804;13805;13806;13807;13808;13809;13810;13811;13812;13813;13814;13815;13816;13817;13818;13819;13820;13821;13822;13823;13824;13825;13826;13827;13828;13829;13830;13831;13832;13833;13834;13835;13836 8317;8318;8319;8320;8321;8322;8323;8324;8325;8326;8327;8328;8329;8330;8331;8332;8333;8334;8335;8336;8337;8338;8339;8340;8341;8342;8343;8344;8345;8346;8347;8348;8349;8350;8351;8352;8353;8354;8355 8355 39 AFTVMSCDNVR Unmodified 1298.5747 0.57474142 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.212 25.098 2 2.4201E-07 10845 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 162.97 160.29 198300000 31089000 31595000 27181000 0 0 0 15991000 11723000 16713000 0 0 0 10885000 9691800 13965000 0 0 0 9923600 10565000 8975800 0 0 0 709 1508 692 13837;13838;13839;13840;13841;13842;13843;13844;13845;13846;13847;13848 8356;8357;8358;8359;8360;8361;8362;8363;8364;8365 8365 10 AFVAQLR Unmodified 803.46537 0.46537261 1314 P27859 tatD Tat-linked quality control protein TatD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.904 21.992 2 0.0013909 8597 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 130.84 107.04 73749000 6515400 5485300 4982100 0 0 0 0 7129000 4969800 0 0 0 5297300 5461500 6129200 0 0 0 10109000 8059000 9611400 0 0 0 710 1314 693 13849;13850;13851;13852;13853;13854;13855;13856;13857;13858;13859 8366;8367;8368;8369 8368 4 AFVEYLNK Unmodified 982.51238 0.51238239 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 27.855 26.695 2 0.0016332 11677 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 107.22 103.2 1471000000 118450000 112000000 93031000 0 0 3876600 105960000 113150000 91537000 0 0 0 122910000 112970000 103430000 0 0 0 166200000 161140000 166360000 0 0 0 711 883 694 13860;13861;13862;13863;13864;13865;13866;13867;13868;13869;13870;13871;13872 8370;8371;8372;8373;8374;8375;8376;8377;8378 8377 3 AFVNADFDGFAR Unmodified 1328.6149 0.61494998 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 41.185 39.517 2 1.0674E-16 18436 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 204.79 191.33 3116400000 157800000 155290000 139120000 0 0 1387200 351340000 354880000 333070000 0 0 0 282020000 281040000 288990000 0 0 0 262530000 266570000 242350000 0 0 0 712 1487 695 13873;13874;13875;13876;13877;13878;13879;13880;13881;13882;13883;13884;13885 8379;8380;8381;8382;8383;8384;8385;8386;8387;8388;8389;8390;8391;8392 8391 14 AFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNK Unmodified 4355.1499 0.1498653 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 1 1 2 48.248 46.97 5;6 8.8075E-19 22856 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 133.47 133.28 1059700000 67253000 54330000 46080000 0 8131600 0 91767000 101190000 87953000 7024300 12777000 10846000 87244000 63181000 73655000 11688000 8242200 7913200 116300000 93150000 71091000 13801000 13148000 12961000 713 124 696 13886;13887;13888;13889;13890;13891;13892;13893;13894;13895;13896;13897;13898;13899;13900;13901;13902;13903;13904;13905;13906;13907;13908;13909;13910;13911;13912;13913;13914;13915;13916;13917;13918;13919;13920;13921 8393;8394;8395;8396;8397;8398;8399;8400;8401;8402;8403;8404;8405;8406;8407;8408;8409;8410 8401 18 AFVQLADFSHINYIITDK Unmodified 2094.0786 0.078591257 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 51.663 50.373 3 1.2559E-06 18199 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 93.152 87.934 60643000 0 0 4188900 9740300 9915500 8463200 0 0 2029400 0 0 0 0 0 0 0 0 0 0 0 3230400 7664300 7566800 7843900 714 1933 697 13922;13923;13924;13925;13926;13927;13928;13929;13930 8411;8412;8413;8414;8415;8416 8414 6 AFYDKYNVPCR Unmodified 1431.6605 0.66051996 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 1 By MS/MS 1 23.125 22.421 3 0.072383 7474 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 46.406 41.408 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 715 1058 698 13931 8417 8417 1 AFYDYLK Unmodified 918.44872 0.4487195 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 35.057 33.795 2 0.010727 16075 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 86.512 73.304 342610000 130650000 113560000 98401000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 716 1464 699 13932;13933;13934 8418;8419;8420 8419 3 AFYEALK Unmodified 840.43815 0.43815481 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.885 23.819 2 0.018546 8611 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 78.616 50.361 332890000 0 0 0 0 0 0 46359000 44678000 40152000 17147000 15612000 16013000 21163000 24695000 20484000 3038300 2434000 1927500 23330000 22328000 25621000 3867400 4042800 0 717 1836 700 13935;13936;13937;13938;13939;13940;13941;13942;13943;13944;13945;13946;13947;13948;13949;13950;13951;13952;13953;13954 8421;8422;8423;8424;8425;8426 8421 6 AFYEALKEAGGTPGENMTMDNK Unmodified 2373.0617 0.061696918 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 33.991 31.574 3 0.068459 12246 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 34.217 34.205 8478800 0 0 0 0 0 0 0 0 0 3006500 2265400 3206900 0 0 0 0 0 0 0 0 0 0 0 0 718 1836 701 13955;13956;13957 8427;8428 8428 2 AFYPGTLPFPLLHVDTGWK Unmodified 2158.1251 0.12514752 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 54.462 53.024 3 3.1648E-10 26274 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 126.88 125.31 1812000000 146110000 161830000 135850000 0 2415300 0 106550000 94321000 85889000 0 0 0 139020000 140250000 126610000 0 0 0 229070000 255700000 188340000 0 0 0 719 1169 702 13958;13959;13960;13961;13962;13963;13964;13965;13966;13967;13968;13969;13970;13971 8429;8430;8431;8432;8433;8434;8435;8436;8437;8438;8439;8440 8430 12 AFYPTDAK Unmodified 911.43888 0.43888309 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 17.91 18.441 1;2 0.0015887 6946 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.59 104.61 879640000 97774000 93679000 85121000 10815000 10902000 10853000 138260000 145340000 144290000 3282400 4502300 5009400 20860000 16775000 15755000 0 0 0 25718000 25764000 24952000 0 0 0 720 147 703 13972;13973;13974;13975;13976;13977;13978;13979;13980;13981;13982;13983;13984;13985;13986;13987;13988;13989;13990;13991;13992;13993;13994;13995 8441;8442;8443;8444;8445;8446;8447;8448;8449;8450;8451 8443 9 AFYYQPVLCTVQAK Unmodified 1686.844 0.84396364 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 2 2 1 1 1 1 1 1 1 1 2 1 41.028 38.99 2;3 1.0386E-05 18824 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.927 70.6 593600000 0 0 0 1912800 2751600 2656200 141980000 137570000 135160000 11953000 13443000 12606000 0 0 0 0 0 0 0 0 120950000 3290100 5279700 4047600 721 1468 704 13996;13997;13998;13999;14000;14001;14002;14003;14004;14005;14006;14007;14008;14009;14010;14011 8452;8453;8454;8455;8456 8456 1 AGAAGLHIEDQVGAK Unmodified 1435.7419 0.7419414 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 18.812 19.4 2;3 3.3743E-20 7274 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 212.9 183.94 401900000 142900000 150180000 106420000 1223800 0 1168200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 722 1914 705 14012;14013;14014;14015;14016;14017;14018;14019 8457;8458;8459;8460;8461;8462 8460 6 AGAAIGAQAGAALK Unmodified 1168.6564 0.65642086 1825 P76149 sad Succinate semialdehyde dehydrogenase [NAD(P)+] Sad yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 19.183 19.789 2 0.047623 7714 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 47.561 39.341 36555000 7126700 5726200 5123300 0 0 0 0 0 0 0 0 0 3726300 0 0 0 0 0 4028900 5708100 5115200 0 0 0 723 1825 706 14020;14021;14022;14023;14024;14025;14026 8463 8463 0 AGAANAALLAAQILATHDK Unmodified 1818.9952 0.99519598 979 P0AG18 purE N5-carboxyaminoimidazole ribonucleotide mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 46.02 44.573 2;3 1.2437E-22 21586 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 235.25 234.7 942890000 243250000 246070000 230940000 0 0 0 18632000 13480000 17576000 0 0 0 20596000 21967000 21615000 0 0 0 33529000 41207000 34025000 0 0 0 724 979 707 14027;14028;14029;14030;14031;14032;14033;14034;14035;14036;14037;14038;14039;14040;14041 8464;8465;8466;8467;8468;8469;8470;8471;8472 8471 9 AGAANAALLAAQILATHDKELHQR Unmodified 2482.3405 0.34045346 979 P0AG18 purE N5-carboxyaminoimidazole ribonucleotide mutase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.564 37.748 5 1.2575E-31 18196 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.98 164.73 109820000 25297000 31981000 26418000 905540 829280 1327300 1954700 0 0 961400 0 1082300 0 0 0 0 0 0 5960700 6039400 7059100 0 0 0 725 979 708 14042;14043;14044;14045;14046;14047;14048;14049;14050;14051;14052;14053 8473;8474 8474 2 AGAAQTIVASQQR Unmodified 1299.6895 0.6895119 1386 P32125 mobB Molybdopterin-guanine dinucleotide biosynthesis adapter protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 14.72 15.513 2 2.3201E-05 4949 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.79 73.535 25900000 0 4553500 0 0 0 0 0 0 4348500 0 0 0 4313200 0 0 0 0 0 5309200 4184600 3191600 0 0 0 726 1386 709 14054;14055;14056;14057;14058;14059 8475;8476;8477;8478;8479 8479 5 AGAASGWDYSSR Unmodified 1226.5316 0.53161428 1646 P62601 treF Cytoplasmic trehalase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 19.82 20.235 2 0.00086583 7745 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.294 75.294 49946000 9460900 8328300 9091100 0 0 0 7917200 7023500 6776900 0 0 0 0 1347800 0 0 0 0 0 0 0 0 0 0 727 1646 710 14060;14061;14062;14063;14064;14065;14066 8480;8481;8482 8481 0 AGADFIK Unmodified 720.38064 0.38063993 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.223 17.915 2 0.022706 6498 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 74.415 53.86 3476000000 93812000 102800000 113670000 853180 0 781850 520650000 545650000 517910000 0 0 0 281900000 280900000 229170000 0 0 0 280600000 247540000 259760000 0 0 0 728 257 711 14067;14068;14069;14070;14071;14072;14073;14074;14075;14076;14077;14078;14079;14080 8483;8484;8485;8486;8487;8488;8489;8490;8491;8492 8487 10 AGADIIMLDNFETEQMR Unmodified 1952.8972 0.89719777 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.493 49.079 2 7.7101E-19 23786 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 190.46 184.73 116400000 15327000 12924000 11424000 0 0 0 7819200 6230900 5766800 0 0 0 7989000 6502200 8115800 0 0 0 10120000 11543000 12634000 0 0 0 729 1334 712 14081;14082;14083;14084;14085;14086;14087;14088;14089;14090;14091;14092 8493;8494;8495;8496;8497;8498;8499 8497 4 AGADINVLEHALK Unmodified 1349.7303 0.73031409 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.348 31.846 3 0.00041874 15156 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 70.089 64.247 404200000 44116000 45610000 27599000 0 467680 0 26027000 21198000 18957000 0 0 526430 31224000 29396000 25569000 0 0 0 35659000 35299000 62552000 0 0 0 730 1399 713 14093;14094;14095;14096;14097;14098;14099;14100;14101;14102;14103;14104;14105;14106 8500;8501;8502;8503;8504;8505;8506;8507;8508;8509;8510 8502 11 AGAGTDAAIDSLKPYLDK Unmodified 1804.9207 0.92069363 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 2 2 1 2 2 2 2 2 2 37.147 35.439 2;3 1.0203E-28 17539 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 249.75 236.98 12616000000 861170000 821070000 666250000 0 0 0 1104400000 1065900000 1042300000 0 0 771230 1036100000 1066300000 1033700000 0 0 0 1278100000 1269400000 1370400000 0 0 0 731 24 714 14107;14108;14109;14110;14111;14112;14113;14114;14115;14116;14117;14118;14119;14120;14121;14122;14123;14124;14125;14126;14127;14128;14129;14130 8511;8512;8513;8514;8515;8516;8517;8518;8519;8520 8512 6 AGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIR Unmodified 3667.837 0.83697059 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 2 3 3 3 3 3 3 54.044 52.615 3;4;5 2.7404E-115 25749 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 320.62 307.5 10536000000 903780000 822970000 857970000 0 0 0 159930000 138300000 144190000 0 0 0 1166200000 1066000000 974410000 0 0 0 1416300000 1432300000 1453500000 0 0 0 732 24 715 14131;14132;14133;14134;14135;14136;14137;14138;14139;14140;14141;14142;14143;14144;14145;14146;14147;14148;14149;14150;14151;14152;14153;14154;14155;14156;14157;14158;14159;14160;14161;14162;14163;14164 8521;8522;8523;8524;8525;8526;8527;8528;8529;8530;8531;8532;8533;8534;8535;8536;8537;8538;8539;8540;8541 8528 21 AGALIAPIQIVEER Unmodified 1478.8457 0.8456782 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 46.525 44.929 2 2.1109E-06 17978 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 125.74 113.3 431410000 25556000 3558400 18753000 6234000 7046100 7319100 38841000 34123000 32072000 11209000 9844500 9151400 22998000 20464000 26178000 0 0 0 42392000 46563000 43811000 7316200 8477500 9496600 733 997 716 14165;14166;14167;14168;14169;14170;14171;14172;14173;14174;14175;14176;14177;14178;14179;14180;14181;14182;14183;14184;14185;14186;14187;14188 8542;8543;8544;8545;8546;8547;8548;8549;8550;8551;8552;8553;8554;8555 8544 14 AGALIMAAR Unmodified 872.49021 0.49020716 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.922 21.751 2 4.6109E-05 6643 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 150.02 116.53 7689600000 0 171100000 134430000 1793000 1464500 1706200 84667000 70957000 0 380910000 476510000 439070000 109160000 98526000 95429000 1221500000 1030200000 984270000 129610000 137710000 0 752160000 637750000 730680000 734 935 717 14189;14190;14191;14192;14193;14194;14195;14196;14197;14198;14199;14200;14201;14202;14203;14204;14205;14206;14207;14208;14209 8556;8557;8558;8559;8560;8561;8562;8563;8564;8565;8566;8567;8568;8569;8570;8571;8572 8556 12 AGALIMAAR Oxidation (M) 888.48512 0.48512178 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 16.928 16.984 2 0.026817 4722 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 62.659 48.597 53142000 0 0 0 0 0 0 0 0 0 7891000 0 5187000 0 0 0 14051000 0 8129700 0 0 0 0 8155800 9727300 735 935 717 14210;14211;14212;14213;14214;14215 8573;8574;8575;8576 8576 417 1 AGAPFGPGANPMHGR Unmodified 1435.6779 0.67790136 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 19.526 19.818 2;3 3.9743E-20 7456 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 210.6 201.24 30213000000 1394400000 1168800000 1100900000 10297000 10834000 11132000 3484100000 3952100000 3797700000 20333000 20006000 20599000 3117900000 3491300000 2682300000 8621200 8093500 4940100 1985600000 1963400000 1928700000 10930000 9762400 10338000 736 212 718 14216;14217;14218;14219;14220;14221;14222;14223;14224;14225;14226;14227;14228;14229;14230;14231;14232;14233;14234;14235;14236;14237;14238;14239;14240;14241;14242;14243;14244;14245;14246;14247;14248;14249;14250;14251;14252;14253;14254;14255;14256;14257;14258;14259;14260 8577;8578;8579;8580;8581;8582;8583;8584;8585;8586;8587;8588;8589;8590;8591;8592;8593;8594;8595;8596;8597;8598;8599;8600;8601;8602;8603;8604;8605;8606;8607;8608;8609;8610;8611;8612 8606 36 AGAPFGPGANPMHGR Oxidation (M) 1451.6728 0.67281598 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 3 4 1 1 2 3 1 1 16.309 16.971 2;3 0.0016931 4858 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 61.167 53.443 491000000 0 0 11564000 1439800 1029800 923800 10810000 180480000 192660000 0 0 1134000 18455000 0 27844000 0 0 0 44661000 0 0 0 0 0 737 212 718 14261;14262;14263;14264;14265;14266;14267;14268;14269;14270;14271;14272;14273;14274;14275;14276;14277;14278;14279;14280;14281;14282;14283;14284 8613;8614;8615;8616;8617;8618;8619;8620;8621;8622;8623;8624;8625 8623 69 12 AGATADLGVSVRPR Unmodified 1368.7474 0.74736113 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 18.649 19.209 3 2.1178E-06 7299 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 115.37 97.679 190410000 14971000 14106000 11777000 985980 0 0 17911000 16889000 18751000 0 0 0 11413000 10128000 6342900 0 0 0 24939000 22103000 20093000 0 0 0 738 121 719 14285;14286;14287;14288;14289;14290;14291;14292;14293;14294;14295;14296;14297 8626;8627;8628;8629;8630;8631;8632;8633;8634;8635;8636;8637 8629 12 AGAVAGVSHLR Unmodified 1036.5778 0.57777661 1473 P37595 iaaA Isoaspartyl peptidase;Isoaspartyl peptidase subunit alpha;Isoaspartyl peptidase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.48 13.315 2 8.7031E-05 3992 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.33 65.519 127490000 13317000 14390000 12318000 0 0 0 13030000 16406000 0 0 0 0 8810900 8184400 7485900 0 0 0 10330000 11120000 12098000 0 0 0 739 1473 720 14298;14299;14300;14301;14302;14303;14304;14305;14306;14307;14308 8638;8639;8640;8641;8642;8643;8644;8645 8641 8 AGAWQVINYR Unmodified 1176.604 0.60399136 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.24 31.8 2 2.2238E-05 14890 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 176.29 173.31 1048500000 186070000 163320000 144170000 0 0 0 138050000 120260000 131790000 0 0 0 29656000 28420000 24380000 0 0 0 25276000 31870000 25256000 0 0 0 740 1316 721 14309;14310;14311;14312;14313;14314;14315;14316;14317;14318;14319;14320 8646;8647;8648 8648 3 AGAWYSYK Unmodified 944.43922 0.43921744 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.424 22.648 2 0.0006403 9597 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 129.4 124.72 1139700000 82844000 67952000 79023000 2159400 3239300 3299400 90859000 76174000 70863000 63239000 51053000 50255000 68129000 46651000 60069000 10532000 7719900 9156800 86594000 88003000 89419000 11804000 9707400 10967000 741 343 722 14321;14322;14323;14324;14325;14326;14327;14328;14329;14330;14331;14332;14333;14334;14335;14336;14337;14338;14339;14340;14341;14342;14343;14344 8649;8650;8651;8652;8653;8654;8655;8656;8657;8658;8659;8660;8661;8662;8663;8664;8665;8666;8667;8668;8669;8670;8671 8667 23 AGAWYSYKGEK Unmodified 1258.5982 0.59823728 343 P0A7G6 recA Protein RecA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 2 2 2 2 2 2 2 1 2 17.005 17.196 2;3 0.00010445 5095 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 127.4 127.4 489900000 0 0 0 3164300 10409000 8498400 0 0 0 191420000 130910000 36773000 0 0 0 28255000 29153000 28404000 0 0 0 11687000 3734400 7490800 742 343 723 14345;14346;14347;14348;14349;14350;14351;14352;14353;14354;14355;14356;14357;14358;14359;14360;14361;14362;14363;14364;14365;14366 8672;8673;8674;8675;8676;8677;8678;8679;8680 8677 9 AGAYGIQGLGGCFVR Unmodified 1524.7507 0.75073195 1261 P25536 yhdE Maf-like protein YhdE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 39.863 38.171 2 0.013737 18544 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.398 54.857 204410000 22584000 20919000 16109000 0 0 0 15108000 0 13597000 0 0 0 0 0 0 0 0 0 37819000 39374000 38906000 0 0 0 743 1261 724 14367;14368;14369;14370;14371;14372;14373;14374 8681 8681 0 AGCPVSQVLK Unmodified 1057.559 0.559015 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.276 20.643 2 0.0001937 7923 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.85 112.26 5043400000 874500000 899410000 696650000 0 2086400 0 649040000 562640000 663630000 0 0 0 95167000 78944000 73193000 0 0 0 159390000 141100000 147000000 0 0 693920 744 1038 725 14375;14376;14377;14378;14379;14380;14381;14382;14383;14384;14385;14386;14387;14388 8682;8683;8684;8685;8686;8687;8688;8689;8690;8691;8692;8693 8689 12 AGCSSIK Unmodified 721.34287 0.34287422 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 1 1 1 1 1 1 5.7148 6.5807 2 0.0043665 1630 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.11 38.439 1257300000 0 157570000 164330000 0 0 0 80187000 73750000 80564000 0 0 0 149360000 109740000 112960000 0 0 0 122020000 108780000 97991000 0 0 0 745 424 726 14389;14390;14391;14392;14393;14394;14395;14396;14397;14398;14399;14400;14401 8694;8695;8696;8697;8698;8699;8700;8701;8702 8699 9 AGDDAARPEWLEPEFGVR Unmodified 2013.9545 0.95445338 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 41.199 39.478 2;3 4.5576E-36 19260 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 254.1 232.47 4425000000 312850000 297130000 257620000 11303000 8079000 9707200 353490000 328730000 335460000 62954000 51179000 53003000 351330000 302920000 314940000 29344000 20158000 19732000 401630000 420000000 419620000 25588000 17125000 21064000 746 882 727 14402;14403;14404;14405;14406;14407;14408;14409;14410;14411;14412;14413;14414;14415;14416;14417;14418;14419;14420;14421;14422;14423;14424;14425;14426;14427;14428;14429;14430;14431;14432;14433;14434;14435;14436;14437;14438;14439;14440 8703;8704;8705;8706;8707;8708;8709;8710;8711;8712;8713;8714;8715;8716;8717;8718;8719;8720;8721;8722;8723;8724;8725;8726;8727;8728;8729;8730;8731;8732;8733;8734 8718 32 AGDEFAFQYR Unmodified 1202.5356 0.53563702 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.385 31.045 2 4.3896E-09 14935 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 194.2 187.05 292110000 20574000 18970000 19159000 0 0 0 21428000 26728000 24074000 0 0 0 25045000 21466000 20557000 0 0 0 27297000 31454000 35361000 0 0 0 747 1548 728 14441;14442;14443;14444;14445;14446;14447;14448;14449;14450;14451;14452 8735;8736;8737;8738;8739;8740;8741;8742;8743;8744;8745 8736 11 AGDEGKLFGSIGTR Unmodified 1406.7154 0.7153923 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 25.437 24.359 3 0.00028875 7978 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 69.345 60.96 55972000 0 0 1305000 18418000 17984000 18265000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 748 364 729 14453;14454;14455;14456 8746;8747;8748 8746 3 AGDFMLSR Unmodified 895.42219 0.42218717 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 25.254 24.18 2 0.087026 10744 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 58.596 47.301 66628000 3607900 4034100 0 0 0 0 10280000 12060000 8350500 0 0 0 9118100 0 0 0 0 0 6266700 7050900 5859600 0 0 0 749 1961 730 14457;14458;14459;14460;14461;14462;14463;14464;14465 8749;8750 8750 0 AGDIAAAIGLK Unmodified 998.57605 0.57604528 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 2 2 2 2 2 2 3 3 2 2 1 1 2 2 2 1 1 1 35.539 33.945 1;2 0.0002203 16223 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.9 60.467 19959000000 1855400000 1655700000 1448700000 11117000 12292000 11609000 1622200000 1498400000 1400300000 16082000 17345000 19322000 1533200000 1417300000 1445700000 7737900 4773800 5389500 1949000000 2050800000 1951900000 9490000 6453000 9167200 750 264 731 14466;14467;14468;14469;14470;14471;14472;14473;14474;14475;14476;14477;14478;14479;14480;14481;14482;14483;14484;14485;14486;14487;14488;14489;14490;14491;14492;14493;14494;14495;14496;14497;14498;14499;14500;14501;14502;14503;14504;14505;14506;14507;14508;14509 8751;8752;8753;8754;8755;8756;8757;8758;8759;8760;8761;8762;8763;8764;8765;8766;8767;8768;8769;8770;8771;8772;8773;8774;8775;8776;8777;8778;8779;8780;8781;8782;8783 8762 26 AGDIHPVYK Unmodified 998.51853 0.5185304 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.103 12.935 2 0.0011011 3716 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.162 74.387 181860000 26115000 22503000 26946000 0 0 0 12395000 13225000 16317000 0 0 0 13441000 10729000 11506000 0 0 0 11882000 9206300 7597000 0 0 0 751 184 732 14510;14511;14512;14513;14514;14515;14516;14517;14518;14519;14520;14521 8784;8785 8784 2 AGDIVGEHTAMFADIGER Unmodified 1887.8785 0.87851124 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.761 34.217 3 2.0923E-10 16989 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.45 120.68 650390000 50104000 53319000 46736000 0 0 0 45673000 50524000 51976000 5762800 2877400 5119700 47791000 48698000 39532000 16673000 11739000 12877000 50704000 50835000 44948000 5616600 4276800 4608700 752 85 733 14522;14523;14524;14525;14526;14527;14528;14529;14530;14531;14532;14533;14534;14535;14536;14537;14538;14539;14540;14541;14542 8786;8787;8788;8789;8790;8791;8792;8793;8794;8795;8796;8797 8786 12 AGDKEEAIR Unmodified 987.49852 0.49852324 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 10.288 11.156 2 0.0005908 2543 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 114.19 85.105 258640000 29326000 26590000 18191000 0 1534000 0 0 0 0 0 0 0 35431000 23449000 14415000 0 0 0 38254000 33989000 37465000 0 0 0 753 1748 734 14543;14544;14545;14546;14547;14548;14549;14550;14551;14552 8798;8799 8798 2 AGDLAAMLTNLEPHDVLFIDEIHR Unmodified 2689.3534 0.35338591 387 P0A812 ruvB Holliday junction ATP-dependent DNA helicase RuvB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.368 52.902 4 1.3946E-06 25824 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 77.649 75.107 294550000 35195000 21247000 29931000 0 0 0 19157000 16931000 14245000 14233000 5936700 0 19417000 20662000 20419000 0 0 0 25001000 28592000 23581000 0 0 0 754 387 735 14553;14554;14555;14556;14557;14558;14559;14560;14561;14562;14563;14564;14565;14566 8800 8800 1 AGDMVIDGSVR Unmodified 1118.539 0.53900784 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.95 22.341 2 0.00016301 7879 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 125.48 101.33 1304900000 18732000 18388000 16902000 11913000 16647000 14271000 106990000 100590000 105430000 21162000 31761000 40260000 109450000 87634000 94309000 10386000 6821300 7761800 127410000 121230000 119840000 36757000 38381000 41915000 755 643 736 14567;14568;14569;14570;14571;14572;14573;14574;14575;14576;14577;14578;14579;14580;14581;14582;14583;14584;14585;14586;14587;14588;14589;14590 8801;8802;8803;8804;8805;8806;8807;8808;8809;8810;8811;8812;8813;8814;8815;8816;8817 8802 15 AGDNAPMAYIELVDR Unmodified 1633.777 0.77700628 984 P0AG44 rplQ 50S ribosomal protein L17 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 47.526 46.192 2;3 4.4166E-07 22484 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 119.65 111.47 3602200000 489130000 450570000 455330000 15393000 18739000 15383000 131420000 130190000 107420000 35203000 29316000 30475000 239890000 207690000 195050000 48530000 36584000 35151000 247340000 260810000 309820000 35877000 39714000 37184000 756 984 737 14591;14592;14593;14594;14595;14596;14597;14598;14599;14600;14601;14602;14603;14604;14605;14606;14607;14608;14609;14610;14611;14612;14613;14614;14615;14616;14617;14618;14619;14620;14621;14622;14623;14624;14625;14626;14627;14628;14629;14630;14631;14632;14633;14634;14635;14636;14637;14638 8818;8819;8820;8821;8822;8823;8824;8825;8826;8827;8828;8829;8830;8831;8832;8833;8834;8835;8836;8837;8838;8839;8840;8841;8842;8843;8844;8845;8846;8847;8848;8849;8850;8851;8852 8837 32 AGDPPSIPLSR Unmodified 1108.5877 0.58767259 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.078 24.011 2 9.4054E-05 10614 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 120.99 113.42 371300000 27432000 23990000 23190000 0 0 0 33934000 38413000 35916000 1062300 0 0 19946000 16267000 19563000 0 0 0 47028000 41142000 43416000 0 0 0 757 280 738 14639;14640;14641;14642;14643;14644;14645;14646;14647;14648;14649;14650;14651 8853;8854;8855;8856;8857;8858;8859;8860;8861;8862 8857 10 AGDPVILWGEGLPVER Unmodified 1706.8992 0.89917033 227 P0A6B4 alr Alanine racemase, biosynthetic yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 51.479 50.223 2 3.4188E-10 24417 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 147.26 140 177240000 15965000 17382000 10581000 0 0 0 15862000 13708000 14699000 0 0 0 0 13122000 10904000 0 0 0 24562000 19534000 20925000 0 0 0 758 227 739 14652;14653;14654;14655;14656;14657;14658;14659;14660;14661;14662 8863;8864;8865;8866;8867;8868;8869;8870 8866 8 AGDQIQSGVDAAIK Unmodified 1371.6994 0.69940789 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 24.139 23.367 2 0.00068156 9794 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 75.229 64.857 44983000 8320200 5707600 8644100 0 0 0 0 0 0 0 0 0 0 0 3659600 0 0 0 6885700 6089600 5676300 0 0 0 759 1620 740 14663;14664;14665;14666;14667;14668;14669 8871;8872;8873 8873 0 AGDQIQSGVDAAIKPGNTLPMR Unmodified 2238.1427 0.14266485 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 4 3 3 3 2 3 3 2 3 3 3 2 1 1 3 3 3 3 3 3 32.976 31.412 2;3;4 1.7417E-102 14820 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 415.35 395.67 11373000000 1777900000 1391000000 1245200000 56440000 56780000 60041000 444420000 417430000 383360000 95635000 98203000 97428000 663070000 573010000 559070000 92092000 80020000 82544000 925400000 932380000 942760000 135520000 134440000 128480000 760 1620 741 14670;14671;14672;14673;14674;14675;14676;14677;14678;14679;14680;14681;14682;14683;14684;14685;14686;14687;14688;14689;14690;14691;14692;14693;14694;14695;14696;14697;14698;14699;14700;14701;14702;14703;14704;14705;14706;14707;14708;14709;14710;14711;14712;14713;14714;14715;14716;14717;14718;14719;14720;14721;14722;14723;14724;14725;14726;14727;14728;14729;14730;14731;14732;14733;14734;14735 8874;8875;8876;8877;8878;8879;8880;8881;8882;8883;8884;8885;8886;8887;8888;8889;8890;8891;8892;8893;8894;8895;8896;8897;8898;8899;8900;8901;8902;8903;8904;8905;8906;8907;8908;8909;8910;8911;8912;8913;8914;8915;8916;8917;8918;8919 8899 46 AGDQIQSGVDAAIKPGNTLPMR Oxidation (M) 2254.1376 0.13757947 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.05 27.69 3 0.0026687 12801 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 56.766 53.576 115650000 18512000 16435000 15550000 1720700 0 365810 8489100 10006000 7405500 1975000 3132300 0 0 0 0 1385900 0 1247600 13293000 12303000 0 0 1939000 1887100 761 1620 741 14736;14737;14738;14739;14740;14741;14742;14743;14744;14745;14746;14747;14748;14749;14750;14751 8920;8921;8922;8923 8920 576 4 AGDVFDPQTNFGPLVSFPHR Unmodified 2200.0702 0.070151836 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 49.441 48.102 2;3 4.7249E-23 23406 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 249.39 244.58 701970000 233040000 229820000 239120000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 762 1141 742 14752;14753;14754;14755;14756;14757 8924;8925;8926;8927;8928;8929 8929 6 AGDVIPQVVNVVLSERPEDTR Unmodified 2292.2074 0.2073736 1102 P15042 ligA DNA ligase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 49.894 48.945 3 2.4076E-07 24236 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.45 95.602 287930000 0 0 0 0 0 0 0 42674000 0 0 0 0 34872000 26904000 43541000 8966300 7683200 10283000 34028000 44395000 34583000 0 0 0 763 1102 743 14758;14759;14760;14761;14762;14763;14764;14765;14766;14767 8930;8931;8932;8933 8932 4 AGDVITSLNGK Unmodified 1073.5717 0.57168818 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.992 22.039 2 1.5646E-07 8544 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 169.12 145.69 106340000 9589700 8896700 5294600 0 0 0 8074000 10414000 8034100 0 0 0 7670500 6924200 7487100 0 0 0 11293000 11359000 11304000 0 0 0 764 1044 744 14768;14769;14770;14771;14772;14773;14774;14775;14776;14777;14778;14779 8934;8935;8936;8937;8938 8938 5 AGDVITSLNGKPISSFAALR Unmodified 2016.1004 0.10038933 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.613 39.733 3 7.0238E-07 15571 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 94.856 93.122 317720000 12941000 10417000 11223000 9776400 8675700 9062800 9212000 10352000 9649800 32892000 38285000 26255000 11949000 0 7927900 0 0 0 16404000 16478000 19474000 15387000 22037000 19326000 765 1044 745 14780;14781;14782;14783;14784;14785;14786;14787;14788;14789;14790;14791;14792;14793;14794;14795;14796;14797;14798;14799 8939;8940;8941;8942 8939 4 AGEEAVPLEAGHR Unmodified 1334.6579 0.65787742 331 P0A7C6 pepE Peptidase E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 2 2 2 2 2 2 15.226 16.042 2;3 7.4996E-06 5438 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 150.61 140.08 887110000 35832000 13983000 33186000 193590 0 0 117390000 126740000 116980000 0 0 0 92480000 80840000 94172000 0 0 0 63289000 57821000 54201000 0 0 0 766 331 746 14800;14801;14802;14803;14804;14805;14806;14807;14808;14809;14810;14811;14812;14813;14814;14815;14816;14817;14818;14819;14820;14821;14822;14823 8943;8944;8945;8946;8947;8948;8949;8950;8951;8952;8953;8954;8955;8956;8957;8958;8959;8960;8961;8962;8963;8964;8965 8948 23 AGEEAVPLEAGHRF Unmodified 1481.7263 0.72629134 331 P0A7C6 pepE Peptidase E yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 2 2 1 1 2 1 2 24.131 23.177 2;3 3.0304E-05 10522 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 119.53 115.37 238350000 7600800 6732500 8341300 0 0 0 42875000 45203000 36817000 0 0 0 19161000 11273000 15530000 0 0 0 18811000 9453600 16555000 0 0 0 767 331 747 14824;14825;14826;14827;14828;14829;14830;14831;14832;14833;14834;14835;14836;14837;14838;14839;14840;14841 8966;8967;8968;8969;8970;8971;8972;8973;8974;8975 8967 10 AGEEFTIDVTFPEEYHAENLK Unmodified 2438.1278 0.12778587 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 1 1 2 3 2 2 1 1 2 2 3 1 1 1 3 3 3 1 1 1 45.888 44.445 2;3 3.011E-34 21546 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 259 257.89 11744000000 863890000 878060000 752790000 17982000 15030000 14546000 806970000 810850000 807120000 50994000 28559000 34006000 1073700000 900160000 880710000 13432000 12906000 8059700 1268500000 1239900000 1209800000 19085000 19346000 17608000 768 396 748 14842;14843;14844;14845;14846;14847;14848;14849;14850;14851;14852;14853;14854;14855;14856;14857;14858;14859;14860;14861;14862;14863;14864;14865;14866;14867;14868;14869;14870;14871;14872;14873;14874;14875;14876;14877;14878;14879;14880;14881;14882;14883;14884;14885 8976;8977;8978;8979;8980;8981;8982;8983;8984;8985;8986;8987;8988;8989;8990;8991;8992;8993;8994;8995;8996;8997;8998;8999;9000;9001;9002;9003;9004;9005;9006;9007;9008;9009;9010;9011;9012;9013;9014;9015;9016;9017;9018;9019;9020;9021;9022;9023;9024 8995 48 AGEEFTIDVTFPEEYHAENLKGK Unmodified 2623.2442 0.24421262 396 P0A850 tig Trigger factor yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 39.945 38.212 4 0.10467 13477 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 28.299 25.858 38692000 0 0 0 6613600 6626900 5526500 0 0 0 6634500 7791600 0 0 0 0 0 0 5499000 0 0 0 0 0 0 769 396 749 14886;14887;14888;14889;14890;14891 9025;9026 9025 2 AGEGEAVR Unmodified 787.38243 0.38243085 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 2 1 1 7.982 8.7069 2 0.0001056 2328 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 160.03 93.034 667960000 199040000 129410000 84510000 1169800 1648300 842040 18169000 17746000 14831000 0 0 3228500 24160000 20716000 17251000 619850 471900 471850 46025000 44179000 43475000 0 0 0 770 696 750 14892;14893;14894;14895;14896;14897;14898;14899;14900;14901;14902;14903;14904;14905;14906;14907;14908;14909;14910;14911;14912;14913 9027;9028;9029;9030;9031;9032;9033;9034;9035;9036;9037;9038 9030 12 AGEHIGICSVCSAHPLVIEAALAFDR Unmodified 2792.3738 0.37380378 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 3 2 1 2 2 3 2 3 1 1 1 2 3 3 1 2 2 47.386 46.012 3;4 4.4875E-41 22626 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 216.14 214.27 6899300000 506020000 444320000 384220000 11744000 13113000 10392000 1043400000 1011900000 865330000 3086500 18538000 19523000 445050000 303350000 435150000 9737600 7770600 9231700 471660000 409230000 438110000 10894000 16264000 11225000 771 1046 751 14914;14915;14916;14917;14918;14919;14920;14921;14922;14923;14924;14925;14926;14927;14928;14929;14930;14931;14932;14933;14934;14935;14936;14937;14938;14939;14940;14941;14942;14943;14944;14945;14946;14947;14948;14949;14950;14951;14952;14953;14954;14955;14956;14957;14958;14959;14960;14961;14962;14963;14964 9039;9040;9041;9042;9043;9044;9045;9046;9047;9048;9049;9050;9051;9052;9053;9054;9055;9056;9057;9058;9059;9060;9061;9062;9063;9064;9065;9066;9067;9068;9069;9070;9071;9072;9073;9074;9075;9076;9077;9078;9079;9080;9081;9082;9083 9051 44 AGEIFQVVPSR Unmodified 1201.6455 0.64552182 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 34.618 33.189 2 0.016903 11461 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 61.56 57.859 195080000 59607000 65510000 65063000 1943000 1722400 1235400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 772 46 752 14965;14966;14967;14968;14969;14970 9084;9085 9085 0 AGEIHPAADNNWR Unmodified 1449.6749 0.67492447 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 15.218 16.026 2;3 1.4509E-05 5442 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 103.46 91.403 420780000 53077000 42331000 51401000 0 0 0 35609000 37092000 37557000 0 0 0 31272000 26859000 24878000 0 0 0 28329000 26583000 25794000 0 0 0 773 184 753 14971;14972;14973;14974;14975;14976;14977;14978;14979;14980;14981;14982;14983;14984;14985;14986;14987;14988;14989;14990;14991;14992;14993;14994 9086;9087;9088;9089;9090;9091;9092;9093;9094;9095;9096;9097;9098;9099 9089 14 AGEITAMAHTR Unmodified 1156.5659 0.56589129 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 13.172 14.044 2;3 1.9518E-07 4039 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 166.34 157.38 1221300000 143750000 146420000 141990000 479590 0 0 121570000 114810000 106440000 0 0 0 74507000 62425000 62614000 0 0 0 79075000 80943000 86244000 0 0 0 774 1100 754 14995;14996;14997;14998;14999;15000;15001;15002;15003;15004;15005;15006;15007;15008;15009;15010;15011;15012;15013;15014;15015;15016;15017;15018;15019 9100;9101;9102;9103;9104;9105;9106;9107;9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120;9121 9116 16 AGEITWPAPPIQVSAQPQAAQK Unmodified 2287.1961 0.19608063 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 1 2 45.219 43.562 2;3 5.3316E-10 21215 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 150.12 145.49 235680000 6784400 4134800 0 2852500 3007200 3412200 0 7386700 12162000 16289000 16711000 14760000 22669000 18672000 19985000 0 0 0 22980000 23497000 24089000 6208400 4451000 5631700 775 146 755 15020;15021;15022;15023;15024;15025;15026;15027;15028;15029;15030;15031;15032;15033;15034;15035;15036;15037;15038;15039;15040;15041;15042;15043;15044;15045;15046;15047;15048;15049 9122;9123;9124;9125;9126;9127;9128;9129;9130;9131;9132;9133;9134;9135;9136;9137;9138;9139;9140;9141;9142 9131 20 AGELIGMVAQQVGGK Unmodified 1456.7708 0.77079869 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 40.345 38.627 2;3 3.3075E-15 19209 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 194.12 177.45 3370000000 291880000 259870000 242260000 3962900 4311900 4435000 247580000 244000000 263030000 2426800 8798800 8353700 253210000 266700000 229670000 0 0 1298100 350780000 358830000 328560000 0 0 0 776 59 756 15050;15051;15052;15053;15054;15055;15056;15057;15058;15059;15060;15061;15062;15063;15064;15065;15066;15067;15068;15069;15070;15071;15072;15073;15074;15075;15076;15077;15078;15079;15080;15081;15082;15083;15084 9143;9144;9145;9146;9147;9148;9149;9150;9151;9152;9153;9154;9155;9156;9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167;9168;9169 9143 27 AGELLLGVGIPVEQHYGPMSEVAPGWK Unmodified 2833.4473 0.44728629 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.263 51.011 3 6.5486E-11 24688 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.86 121.52 966640000 72148000 78909000 75377000 1861900 2790300 0 54775000 54667000 53082000 0 0 0 96011000 87840000 85140000 0 0 0 104580000 106230000 93227000 0 0 0 777 558 757 15085;15086;15087;15088;15089;15090;15091;15092;15093;15094;15095;15096;15097;15098 9170;9171;9172;9173;9174;9175;9176;9177;9178;9179;9180;9181 9175 12 AGENVGVLLR Unmodified 1026.5822 0.58219329 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 1 1 1 4 5 6 1 1 1 6 4 6 1 1 1 6 4 6 1 1 1 31.336 29.989 2 8.4245E-11 8984 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 171.73 138.18 84183000000 6638500000 6958700000 6087300000 145570000 123100000 0 6630900000 7228500000 6825400000 103320000 100370000 89798000 6588200000 6189300000 6194500000 69429000 51727000 56582000 8554600000 7761800000 7545000000 85217000 76398000 78487000 778 1048 758 15099;15100;15101;15102;15103;15104;15105;15106;15107;15108;15109;15110;15111;15112;15113;15114;15115;15116;15117;15118;15119;15120;15121;15122;15123;15124;15125;15126;15127;15128;15129;15130;15131;15132;15133;15134;15135;15136;15137;15138;15139;15140;15141;15142;15143;15144;15145;15146;15147;15148;15149;15150;15151;15152;15153;15154;15155;15156;15157;15158;15159;15160;15161;15162;15163;15164;15165;15166;15167 9182;9183;9184;9185;9186;9187;9188;9189;9190;9191;9192;9193;9194;9195;9196;9197;9198;9199;9200;9201;9202;9203;9204;9205;9206;9207;9208;9209;9210;9211;9212;9213;9214;9215;9216;9217;9218;9219;9220;9221;9222;9223;9224;9225;9226;9227;9228;9229;9230;9231;9232;9233;9234;9235;9236;9237;9238;9239;9240;9241;9242;9243;9244;9245;9246;9247;9248;9249;9250;9251;9252;9253;9254;9255;9256;9257;9258;9259;9260;9261;9262;9263;9264;9265;9266;9267;9268 9233 71 AGEQGYSVPTDAINR Unmodified 1576.7481 0.74814899 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 25.911 24.66 2 0.00025467 9125 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 105.13 103.94 44923000 4679800 5651300 5281200 0 0 0 0 0 0 6722700 5352900 6034100 0 0 4489200 0 0 0 6711500 0 0 0 0 0 779 1877 759 15168;15169;15170;15171;15172;15173;15174;15175 9269;9270;9271 9269 3 AGEQQIIIGK Unmodified 1055.5975 0.597509 1797 P75958 lolE Lipoprotein-releasing system transmembrane protein LolE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 2 2 2 2 2 2 27.752 27.235 2 0.0025666 8103 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 78.149 57.59 158730000 9276700 8547800 7170000 1249100 1151900 1016200 22609000 13676000 13027000 0 0 0 5962600 6485200 5946300 0 0 0 21322000 22051000 19233000 0 0 0 780 1797 760 15176;15177;15178;15179;15180;15181;15182;15183;15184;15185;15186;15187;15188;15189;15190;15191;15192;15193;15194;15195;15196;15197;15198;15199;15200 9272;9273;9274;9275;9276 9273 5 AGETFGEEK Unmodified 966.42944 0.42944062 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.468 13.119 2 8.9731E-05 3545 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 138.78 133.48 4955200000 274350000 247400000 267850000 2103600 2028100 0 530170000 482380000 444740000 6132200 4695900 4978100 424590000 490450000 377170000 2681300 0 0 459770000 454330000 471900000 2729600 2004300 2717600 781 192 761 15201;15202;15203;15204;15205;15206;15207;15208;15209;15210;15211;15212;15213;15214;15215;15216;15217;15218;15219;15220;15221 9277;9278;9279;9280;9281;9282;9283;9284;9285;9286;9287;9288;9289;9290;9291;9292 9292 16 AGETLGLVGESGSGK Unmodified 1360.6834 0.68342347 1432 P33916 yejF Uncharacterized ABC transporter ATP-binding protein YejF yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.538 22.762 2 6.0291E-12 9709 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 175.74 0 514510000 71926000 63009000 60712000 16247000 21148000 26357000 28243000 26720000 20347000 9977500 9749700 10276000 22981000 19427000 15081000 2458000 1308800 1435700 26960000 20672000 27025000 5747900 4174600 2527500 782 1432 762 15222;15223;15224;15225;15226;15227;15228;15229;15230;15231;15232;15233;15234;15235;15236;15237;15238;15239;15240;15241;15242;15243;15244;15245 9293;9294;9295;9296;9297;9298;9299;9300;9301;9302;9303;9304;9305;9306;9307;9308;9309;9310;9311;9312 9310 19 AGETYNIGGHNEK Unmodified 1388.6321 0.6320566 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 11.762 12.606 2;3 1.4996E-17 3242 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 214.64 210.18 1730700000 81536000 126460000 103560000 0 0 532710 133150000 105990000 121090000 0 0 0 175510000 173850000 156560000 0 0 0 181770000 175090000 195640000 0 0 0 783 1496 763 15246;15247;15248;15249;15250;15251;15252;15253;15254;15255;15256;15257;15258;15259;15260;15261;15262;15263;15264;15265;15266;15267;15268;15269;15270 9313;9314;9315;9316;9317;9318;9319;9320;9321;9322;9323;9324;9325;9326;9327;9328;9329;9330;9331;9332;9333;9334;9335;9336;9337 9337 25 AGEVDLTWVPAQQIPAIEK Unmodified 2064.0892 0.089155943 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 50.673 49.311 2 7.9443E-18 24337 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 175.29 173.28 157860000 0 0 0 0 0 0 22266000 22756000 24209000 0 0 0 15586000 15928000 14826000 0 0 0 14376000 15159000 12757000 0 0 0 784 1961 764 15271;15272;15273;15274;15275;15276;15277;15278;15279 9338;9339;9340;9341;9342;9343;9344;9345 9339 8 AGEWTASIGPDWYGTDVHHK Unmodified 2226.013 0.013030887 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 3 3 3 3 3 2 3 34.6 33.139 2;3;4 2.2034E-15 15663 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 194.85 194.25 1715900000 138140000 245420000 116590000 0 0 0 163390000 143240000 166480000 0 0 0 115370000 120930000 112370000 0 0 0 155010000 77673000 161270000 0 0 0 785 1485 765 15280;15281;15282;15283;15284;15285;15286;15287;15288;15289;15290;15291;15292;15293;15294;15295;15296;15297;15298;15299;15300;15301;15302;15303;15304;15305;15306;15307;15308;15309;15310;15311;15312;15313 9346;9347;9348;9349;9350;9351;9352;9353;9354;9355;9356;9357;9358;9359;9360;9361;9362;9363;9364;9365;9366;9367;9368;9369 9363 24 AGFAQVFVLK Unmodified 1078.6175 0.61751616 981 P0AG27 yibN Uncharacterized protein YibN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.55 41.81 2 0.00014141 16828 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 126.67 122.73 485680000 21039000 17326000 15643000 12509000 13433000 11309000 29134000 28892000 28286000 25295000 21038000 17505000 22183000 23480000 21842000 0 0 0 38288000 42577000 37964000 20044000 21613000 16284000 786 981 766 15314;15315;15316;15317;15318;15319;15320;15321;15322;15323;15324;15325;15326;15327;15328;15329;15330;15331;15332;15333;15334 9370;9371;9372;9373;9374;9375;9376;9377;9378;9379;9380;9381;9382;9383;9384;9385;9386;9387;9388;9389;9390 9371 21 AGFATSQEAYDEAVAK Unmodified 1656.7631 0.76313036 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.13 25.983 2 1.2622E-30 12064 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 232.14 227.24 361780000 61539000 63411000 51330000 0 0 0 38380000 32839000 35389000 0 0 0 11570000 14899000 11819000 0 0 0 10787000 15067000 14751000 0 0 0 787 1557 767 15335;15336;15337;15338;15339;15340;15341;15342;15343;15344;15345;15346 9391;9392;9393;9394;9395;9396;9397;9398;9399;9400;9401 9392 11 AGFDAIDVHMSDLLTGR Unmodified 1816.8778 0.87778296 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 1 1 2 2 1 1 2 2 49.765 48.392 2;3 4.6618E-20 23523 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 233.37 213.17 603910000 165870000 140560000 132180000 1112700 528400 623190 10504000 13671000 13782000 0 0 0 26421000 21999000 17077000 0 0 0 5663600 26797000 27123000 0 0 0 788 1107 768 15347;15348;15349;15350;15351;15352;15353;15354;15355;15356;15357;15358;15359;15360;15361;15362;15363;15364;15365;15366;15367;15368 9402;9403;9404;9405;9406;9407;9408;9409;9410 9410 9 AGFEEPMLQNFGSSHDIMVR Unmodified 2264.0354 0.035422588 998 P0AG93 secF Protein translocase subunit SecF yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.167 41.352 3 3.4817E-07 19334 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 103.1 103.1 421690000 0 16141000 15422000 4637600 5720300 4706100 28019000 31671000 30279000 9541100 14424000 12413000 27082000 23110000 29770000 0 0 0 41448000 47910000 43549000 12869000 10829000 12147000 789 998 769 15369;15370;15371;15372;15373;15374;15375;15376;15377;15378;15379;15380;15381;15382;15383;15384;15385;15386;15387;15388;15389 9411;9412;9413;9414;9415;9416;9417;9418;9419;9420;9421;9422;9423;9424;9425;9426;9427 9426 16 AGFLAAIAK Unmodified 860.51199 0.51198846 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.175 31.714 2 0.00058683 15496 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.42 50.812 6892200000 884670000 803220000 726360000 10958000 8599900 9473400 469820000 459250000 429250000 5181100 4035600 5471300 308340000 275450000 253930000 3659300 2592400 3555300 798300000 712940000 691650000 8516500 9194100 7781500 790 1444 770 15390;15391;15392;15393;15394;15395;15396;15397;15398;15399;15400;15401;15402;15403;15404;15405;15406;15407;15408;15409;15410;15411;15412;15413 9428;9429;9430;9431;9432;9433;9434;9435;9436;9437;9438;9439;9440;9441;9442;9443;9444;9445;9446;9447;9448;9449;9450;9451 9431 23 AGFRDVVFQYEPVAAGLDYEATLQEEKR Unmodified 3200.5778 0.57784277 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 48.534 47.696 4 8.7132E-08 18998 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 103.86 101.45 32225000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5333500 0 3856500 0 0 0 6243600 8067900 8723800 791 1448 771 15414;15415;15416;15417;15418 9452;9453;9454;9455 9454 4 AGFSEEQQAIWQK Unmodified 1520.726 0.72595699 1093 P14081 selB Selenocysteine-specific elongation factor yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 30.948 29.677 2 7.5521E-06 13980 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 123.86 113.63 17305000 7773600 0 8756200 0 0 775400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 792 1093 772 15419;15420;15421 9456;9457 9456 2 AGFTITDVNPDFVIVGETR Unmodified 2050.0371 0.037120373 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 1 1 2 2 2 1 2 1 1 2 2 2 1 2 1 53.656 52.25 2;3 1.5297E-36 19094 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 226.04 219.14 657420000 64742000 47780000 55013000 30457000 36370000 35681000 33670000 42912000 27987000 0 1885400 0 50169000 51548000 42597000 0 0 0 44670000 52910000 39027000 0 0 0 793 906 773 15422;15423;15424;15425;15426;15427;15428;15429;15430;15431;15432;15433;15434;15435;15436;15437;15438;15439;15440;15441;15442;15443;15444;15445;15446 9458;9459;9460;9461;9462;9463;9464;9465 9460 8 AGGAGALLVSR Unmodified 970.55598 0.55597854 1074 P11880 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.92 21.967 2 0.00072455 8898 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.149 60.547 299580000 21606000 25178000 18628000 0 0 0 25450000 24965000 23909000 0 0 0 23148000 25176000 21621000 0 0 0 27523000 26117000 36257000 0 0 0 794 1074 774 15447;15448;15449;15450;15451;15452;15453;15454;15455;15456;15457;15458 9466;9467;9468;9469;9470 9469 0 AGGAPTLAVGIAHVFHK Unmodified 1644.91 0.91000979 1535 P39396 yjiY Inner membrane protein YjiY yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 2 1 2 1 1 1 1 2 2 2 2 1 1 33.145 31.565 3;4 5.7572E-07 12086 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 89.466 83.029 436180000 0 0 0 997650 1513000 1009900 42450000 37420000 33356000 12795000 18139000 17957000 13980000 23848000 18724000 2216900 2787500 2734000 49217000 60783000 58696000 14490000 11497000 11569000 795 1535 775 15459;15460;15461;15462;15463;15464;15465;15466;15467;15468;15469;15470;15471;15472;15473;15474;15475;15476;15477;15478;15479;15480;15481;15482;15483;15484;15485;15486;15487;15488;15489 9471;9472;9473;9474;9475;9476;9477;9478;9479;9480;9481;9482 9478 12 AGGASSFLADR Unmodified 1050.5094 0.50942227 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.106 22.124 2 4.2824E-10 9389 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 180.8 175.45 896740000 100280000 78495000 78055000 396600 0 0 86755000 72337000 73851000 0 0 0 55685000 54307000 53781000 0 0 0 81509000 87710000 73581000 0 0 0 796 1503 776 15490;15491;15492;15493;15494;15495;15496;15497;15498;15499;15500;15501;15502 9483;9484;9485;9486;9487;9488;9489;9490;9491;9492;9493;9494 9484 12 AGGASSFLADRVEEEGEVR Unmodified 1977.9392 0.93919724 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 29.535 28.242 2;3 1.0553E-36 13008 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 281.48 232.74 2196700000 221660000 195630000 207520000 8385700 6400500 6720100 169660000 173830000 157290000 5329700 4877200 6905800 145280000 130220000 113960000 1974500 2280100 2255700 212180000 191140000 205330000 9024100 10265000 8602800 797 1503 777 15503;15504;15505;15506;15507;15508;15509;15510;15511;15512;15513;15514;15515;15516;15517;15518;15519;15520;15521;15522;15523;15524;15525;15526;15527;15528;15529;15530;15531;15532;15533;15534;15535;15536;15537;15538;15539 9495;9496;9497;9498;9499;9500;9501;9502;9503;9504;9505;9506;9507;9508;9509;9510;9511;9512;9513;9514;9515;9516;9517;9518 9512 23 AGGFEEGK Unmodified 793.36063 0.36063277 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.209 12.041 1 0.031749 3086 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.794 86.794 239710000 21294000 16726000 14807000 0 0 0 20309000 20093000 20239000 0 0 0 18377000 18546000 16905000 0 0 0 23448000 26380000 22586000 0 0 0 798 63 778 15540;15541;15542;15543;15544;15545;15546;15547;15548;15549;15550;15551 9519;9520;9521;9522 9519 0 AGGFTTGGLNFDAK Unmodified 1354.6517 0.65172941 55 P00944 xylA Xylose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 33.844 32.505 2 0.00015667 15337 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.882 81.295 99745000 18206000 23937000 13259000 0 0 0 0 0 8394400 0 0 0 5951600 4332500 5029400 0 0 0 6274700 6408500 7952000 0 0 0 799 55 779 15552;15553;15554;15555;15556;15557;15558;15559;15560;15561;15562 9523;9524;9525 9525 2 AGGGSATLSMGQAAAR Unmodified 1404.678 0.67796094 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 3 2 3 1 2 1 2 1 1 1 18.239 18.774 2;3 6.3925E-40 6844 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 268.58 252.33 8100200000 1142000000 1165200000 994720000 6084800 6614600 7224500 680570000 581850000 590450000 1577200 0 0 356110000 317170000 281400000 0 0 0 663070000 655260000 650860000 0 0 0 800 1642 780 15563;15564;15565;15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576;15577;15578;15579;15580;15581;15582;15583;15584;15585;15586;15587;15588;15589;15590 9526;9527;9528;9529;9530;9531;9532;9533;9534;9535;9536;9537;9538;9539;9540;9541;9542;9543;9544;9545;9546;9547;9548;9549;9550 9533 25 AGGGSATLSMGQAAAR Oxidation (M) 1420.6729 0.67287556 1642 P61889 mdh Malate dehydrogenase yes yes 0 1 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.255 13.047 2 9.3074E-05 3698 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.884 73.72 98883000 20652000 18298000 17432000 0 0 0 7657500 7213200 10100000 0 0 0 0 0 2334400 0 0 0 9634200 5560400 0 0 0 0 801 1642 780 15591;15592;15593;15594;15595;15596;15597;15598;15599 9551 9551 583 1 AGGLTVSHLR Unmodified 1009.5669 0.56687757 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 13.859 14.731 2 7.555E-09 4672 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 187.78 182.47 192900000 21488000 0 18708000 0 0 0 12631000 16565000 16287000 0 0 0 19580000 16153000 17659000 0 0 0 17152000 16674000 20006000 0 0 0 802 1609 781 15600;15601;15602;15603;15604;15605;15606;15607;15608;15609;15610 9552;9553;9554;9555;9556;9557;9558;9559;9560;9561;9562 9554 10 AGGNYLSSLLVGSEAR Unmodified 1592.8158 0.81583463 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.111 43.696 2 2.4852E-10 21118 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 150.09 117.56 469200000 92171000 69809000 74856000 0 0 0 39428000 36573000 29725000 0 0 0 22904000 19569000 18624000 0 0 0 22418000 23343000 19780000 0 0 0 803 636 782 15611;15612;15613;15614;15615;15616;15617;15618;15619;15620;15621;15622 9563;9564;9565;9566;9567;9568;9569;9570;9571;9572;9573;9574 9568 12 AGGPALLFENPK Unmodified 1212.6503 0.65027285 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.812 33.368 2 0.0010635 13492 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 76.572 67.358 81527000 0 0 27753000 0 0 0 0 0 0 10685000 8889800 8968500 0 0 0 3600800 2270200 2220800 0 0 0 8951300 0 8187100 804 582 783 15623;15624;15625;15626;15627;15628;15629;15630;15631 9575 9575 1 AGGPLYLYR Unmodified 1008.5393 0.53926584 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.363 28.766 2 0.00041271 10699 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 110.9 106.77 1021500000 43008000 29588000 28296000 19908000 16952000 15110000 35375000 38384000 41410000 25672000 33054000 32868000 34178000 41236000 36913000 0 0 0 117340000 123300000 123080000 67168000 66936000 51772000 805 215 784 15632;15633;15634;15635;15636;15637;15638;15639;15640;15641;15642;15643;15644;15645;15646;15647;15648;15649;15650;15651;15652 9576;9577;9578;9579;9580;9581;9582;9583;9584;9585 9579 9 AGGRIPLIIGR Unmodified 1121.7033 0.70331147 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 26.805 25.548 3 0.0099163 8474 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 58.592 55.643 7027000 0 0 0 1949900 2186600 2890500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 806 1444 785 15653;15654;15655 9586;9587 9586 2 AGGSIADFTGHR Unmodified 1187.5683 0.56833414 156 P07102 appA Periplasmic AppA protein;Phosphoanhydride phosphohydrolase;4-phytase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 18.328 18.733 2;3 0.013981 7250 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 50.207 47.229 62508000 0 0 0 0 0 0 19243000 18394000 22308000 0 0 0 0 0 2563100 0 0 0 0 0 0 0 0 0 807 156 786 15656;15657;15658;15659;15660;15661;15662 9588;9589;9590;9591 9588 3 AGGVFTDEAIDAYIALR Unmodified 1780.8996 0.89956426 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1 2 2 2 1 2 2 2 2 2 2 53.344 51.907 2;3 5.8209E-40 25792 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 265.12 251.31 713730000 121710000 64519000 47317000 583810 2447900 0 50416000 48649000 51218000 0 0 1753600 51325000 56137000 51661000 0 0 0 57829000 53114000 55043000 0 0 0 808 508 787 15663;15664;15665;15666;15667;15668;15669;15670;15671;15672;15673;15674;15675;15676;15677;15678;15679;15680;15681;15682;15683;15684;15685;15686;15687;15688;15689 9592;9593;9594;9595;9596;9597;9598;9599;9600;9601;9602;9603;9604;9605;9606;9607;9608;9609 9592 18 AGGVIGILGELDR Unmodified 1268.7089 0.70885036 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 50.295 48.898 2 6.9593E-06 24028 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.61 133.98 253220000 50880000 49241000 45958000 0 1078400 0 12117000 12245000 10876000 0 0 0 9732800 10070000 11443000 0 0 0 14818000 12829000 11932000 0 0 0 809 118 788 15690;15691;15692;15693;15694;15695;15696;15697;15698;15699;15700;15701;15702 9610;9611;9612;9613;9614;9615;9616 9614 7 AGGYLTDGTELHDTNFAR Unmodified 1936.8915 0.89151877 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 1 1 1 1 2 2 2 1 1 29.464 28.124 2;3 5.0804E-67 13409 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 353.2 345.09 2395100000 409650000 389660000 353800000 28604000 23388000 28732000 317390000 282940000 251070000 14045000 11599000 11069000 7892100 6449100 3869700 0 1498600 1136700 78288000 83931000 83786000 0 1692700 4646600 810 147 789 15703;15704;15705;15706;15707;15708;15709;15710;15711;15712;15713;15714;15715;15716;15717;15718;15719;15720;15721;15722;15723;15724;15725;15726;15727;15728;15729;15730;15731;15732;15733;15734;15735;15736;15737 9617;9618;9619;9620;9621;9622;9623;9624;9625;9626;9627;9628;9629;9630;9631;9632;9633;9634;9635 9621 18 AGHEVITIEK Unmodified 1095.5924 0.59242362 1570 P45470 yhbO Protein YhbO yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 2 1 2 1 1 1 2 2 2 1 1 1 13.67 14.614 2;3 8.2389E-07 4743 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 171.56 126.48 276730000 43624000 51089000 54019000 1758300 357910 1852200 26413000 26648000 27892000 0 0 0 10890000 8607400 9040500 0 0 0 5035200 5211600 4295700 0 0 0 811 1570 790 15738;15739;15740;15741;15742;15743;15744;15745;15746;15747;15748;15749;15750;15751;15752;15753;15754;15755;15756;15757 9636;9637;9638;9639;9640 9636 2 AGHEYTLWMDGEEVMVR Unmodified 2021.8975 0.89753212 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 6 9 9 2 1 1 3 7 6 1 1 1 15 14 13 44.205 42.631 2;3 1.7781E-39 15414 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 331.88 328.76 17489000000 13541000 12198000 15138000 0 0 0 19782000 16945000 17863000 1856000000 1583000000 1730000000 15841000 15046000 18344000 602680000 471390000 503110000 7731800 8051500 8601100 3692600000 3425700000 3454900000 812 422 791 15758;15759;15760;15761;15762;15763;15764;15765;15766;15767;15768;15769;15770;15771;15772;15773;15774;15775;15776;15777;15778;15779;15780;15781;15782;15783;15784;15785;15786;15787;15788;15789;15790;15791;15792;15793;15794;15795;15796;15797;15798;15799;15800;15801;15802;15803;15804;15805;15806;15807;15808;15809;15810;15811;15812;15813;15814;15815;15816;15817;15818;15819;15820;15821;15822;15823;15824;15825;15826;15827;15828;15829;15830;15831;15832;15833;15834;15835;15836;15837;15838;15839;15840;15841;15842;15843;15844;15845;15846;15847;15848;15849;15850;15851;15852;15853;15854 9641;9642;9643;9644;9645;9646;9647;9648;9649;9650;9651;9652;9653;9654;9655;9656;9657;9658;9659;9660;9661;9662;9663;9664;9665;9666;9667;9668;9669;9670;9671;9672;9673;9674;9675;9676;9677;9678;9679;9680;9681;9682;9683;9684;9685;9686;9687;9688;9689;9690;9691;9692;9693;9694;9695;9696;9697;9698;9699;9700;9701;9702;9703;9704;9705;9706;9707;9708;9709;9710;9711;9712;9713;9714;9715;9716;9717;9718;9719;9720;9721;9722;9723;9724;9725;9726;9727;9728;9729;9730;9731;9732;9733;9734;9735 9718 92 AGHEYTLWMDGEEVMVR Oxidation (M) 2037.8924 0.89244675 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 9 10 5 4 5 9 9 11 38.506 36.718 2;3 1.3764E-11 14146 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 156.8 153.67 1533600000 0 0 0 0 0 0 0 0 0 123110000 128710000 169680000 0 0 0 31095000 21233000 23632000 0 0 0 346600000 320420000 369130000 813 422 791 15855;15856;15857;15858;15859;15860;15861;15862;15863;15864;15865;15866;15867;15868;15869;15870;15871;15872;15873;15874;15875;15876;15877;15878;15879;15880;15881;15882;15883;15884;15885;15886;15887;15888;15889;15890;15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907;15908;15909;15910;15911;15912;15913;15914;15915;15916;15917;15918;15919;15920;15921;15922;15923 9736;9737;9738;9739;9740;9741;9742;9743;9744;9745;9746;9747;9748;9749;9750;9751;9752;9753;9754;9755;9756;9757;9758;9759;9760;9761;9762;9763;9764;9765;9766;9767;9768;9769;9770;9771;9772;9773;9774;9775;9776;9777;9778;9779;9780;9781;9782;9783 9760 203;204 39 AGHEYTLWMDGEEVMVR 2 Oxidation (M) 2053.8874 0.88736137 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 2 0 By matching By matching By MS/MS By matching 1 1 1 1 40.957 39.374 3 0.0065625 15461 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 47.545 46.581 50327000 0 0 0 0 0 0 0 0 0 0 13133000 0 0 0 0 0 0 2324700 0 0 0 0 19165000 15705000 814 422 791 15924;15925;15926;15927 9784 9784 203;204 1 AGHLTYLGDAEIGDNVNIGAGTITCNYDGANK Unmodified 3293.5259 0.52588356 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.093 40.394 3 1.726E-33 19611 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 191.92 190.59 267740000 13530000 17574000 17710000 0 0 0 30847000 21483000 20354000 0 0 0 21300000 22302000 16090000 0 0 0 29713000 24452000 32387000 0 0 0 815 720 792 15928;15929;15930;15931;15932;15933;15934;15935;15936;15937;15938;15939 9785;9786;9787;9788;9789;9790 9788 6 AGHTAQVNWFHAAENGDVHAFADEVK Unmodified 2820.3004 0.30043914 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 33.402 31.939 4 0.027207 15214 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 39.993 36.794 171230000 16625000 14970000 11896000 0 0 0 13041000 17389000 13119000 0 0 0 14724000 9442800 0 0 0 0 13975000 21464000 24585000 0 0 0 816 1246 793 15940;15941;15942;15943;15944;15945;15946;15947;15948;15949;15950 9791;9792;9793 9791 3 AGHTGALDPLATGMLPICLGEATK Unmodified 2393.2083 0.20830158 1618 P60340 truB tRNA pseudouridine synthase B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 49.911 48.505 3 7.3617E-07 22611 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 103.92 100.64 288680000 18648000 18539000 14626000 0 0 0 21204000 19084000 22187000 0 0 3223500 30832000 26024000 26177000 0 0 0 26953000 29990000 31189000 0 0 0 817 1618 794 15951;15952;15953;15954;15955;15956;15957;15958;15959;15960;15961;15962;15963 9794;9795;9796 9796 3 AGIAEIMTALAVLQQK Unmodified 1655.928 0.92802762 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 55.469 53.991 2;3 4.1865E-24 26914 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 218.07 204.56 2008800000 217240000 188080000 211620000 0 0 0 191540000 186420000 203370000 905990 0 0 178780000 167780000 176010000 0 0 0 90341000 95195000 101560000 0 0 0 818 1333 795 15964;15965;15966;15967;15968;15969;15970;15971;15972;15973;15974;15975;15976;15977;15978;15979;15980;15981;15982;15983;15984;15985;15986;15987;15988 9797;9798;9799;9800;9801;9802;9803;9804;9805;9806;9807;9808;9809 9797 13 AGIAINGSAPADIR Unmodified 1324.7099 0.709913 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 28.306 26.527 2 9.4553E-07 12468 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 130.98 118.76 119590000 0 0 0 0 2121200 0 34525000 31251000 32919000 6930100 5746400 6097900 0 0 0 0 0 0 0 0 0 0 0 0 819 522 796 15989;15990;15991;15992;15993;15994;15995 9810;9811;9812 9811 3 AGIALNDNFVK Unmodified 1160.619 0.61897272 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 2 3 3 1 1 1 2 2 3 1 1 1 4 4 4 1 1 32.445 31.049 2 7.3124E-05 14612 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 124.98 107.07 45690000000 3138800000 2821000000 2659100000 7693900 11308000 9311900 4554800000 4668900000 5061500000 8265600 5251000 8954900 3398300000 3459200000 3375800000 5654900 6687500 9630700 4108200000 4611900000 3751700000 4608500 3913500 0 820 504 797 15996;15997;15998;15999;16000;16001;16002;16003;16004;16005;16006;16007;16008;16009;16010;16011;16012;16013;16014;16015;16016;16017;16018;16019;16020;16021;16022;16023;16024;16025;16026;16027;16028;16029;16030;16031;16032;16033;16034;16035;16036;16037 9813;9814;9815;9816;9817;9818;9819;9820;9821;9822;9823;9824;9825;9826;9827;9828;9829;9830;9831;9832;9833;9834;9835;9836;9837;9838;9839;9840;9841;9842;9843;9844;9845;9846;9847;9848;9849 9830 33 AGIDTIIAAGSK Unmodified 1115.6186 0.61863837 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.499 31.159 2 0.018228 14667 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 57.293 41.411 163730000 15176000 13112000 9095600 0 0 0 14768000 18272000 15514000 0 0 0 11812000 11165000 11317000 0 0 0 17364000 14641000 11494000 0 0 0 821 328 798 16038;16039;16040;16041;16042;16043;16044;16045;16046;16047;16048;16049 9850;9851;9852;9853 9853 3 AGIEAANFPFCTIEPNTGVVPMPDPR Unmodified 2799.336 0.33602129 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.216 52.768 2;3 1.2987E-15 25080 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 180.88 173.82 766240000 66629000 66460000 61116000 0 0 0 42570000 42273000 42828000 0 0 0 71510000 72921000 62056000 0 0 0 79135000 79401000 79338000 0 0 0 822 680 799 16050;16051;16052;16053;16054;16055;16056;16057;16058;16059;16060;16061;16062;16063;16064;16065;16066;16067;16068;16069;16070;16071;16072;16073 9854;9855;9856;9857;9858;9859;9860;9861 9859 8 AGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVER Unmodified 4293.1052 0.1052233 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 3 3 3 3 2 2 3 3 3 2 3 2 55.531 54.07 3;4;5 3.2358E-25 26620 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 156.52 155.18 3521800000 1059200000 964650000 809660000 0 0 0 113730000 91648000 91358000 0 0 0 84332000 65091000 48589000 0 0 0 64787000 78085000 50639000 0 0 0 823 517 800 16074;16075;16076;16077;16078;16079;16080;16081;16082;16083;16084;16085;16086;16087;16088;16089;16090;16091;16092;16093;16094;16095;16096;16097;16098;16099;16100;16101;16102;16103;16104;16105 9862;9863;9864;9865;9866;9867;9868;9869;9870;9871;9872;9873 9871 12 AGIEHGLLYNQEQR Unmodified 1626.8114 0.81141795 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 20.629 21.029 2;3 2.933E-26 7890 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 221.6 206.92 1877200000 150350000 147930000 129130000 0 0 0 137450000 111520000 110710000 0 0 0 176510000 138510000 134910000 0 0 0 236670000 189870000 213590000 0 0 0 824 1634 801 16106;16107;16108;16109;16110;16111;16112;16113;16114;16115;16116;16117;16118;16119;16120;16121;16122;16123;16124;16125;16126;16127;16128;16129 9874;9875;9876;9877;9878;9879;9880;9881;9882;9883;9884;9885;9886;9887;9888;9889;9890;9891;9892;9893;9894;9895 9893 22 AGIELTLFHGR Unmodified 1212.6615 0.66150624 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 34.566 33.096 2;3 3.085E-06 16177 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.23 112.46 961670000 147960000 126420000 124110000 381970 807820 736310 107930000 70440000 106770000 0 0 0 32482000 29443000 33117000 0 0 0 62782000 59768000 58518000 0 0 0 825 43 802 16130;16131;16132;16133;16134;16135;16136;16137;16138;16139;16140;16141;16142;16143;16144;16145;16146;16147;16148;16149;16150;16151;16152;16153;16154 9896;9897;9898;9899;9900;9901;9902;9903;9904;9905;9906;9907;9908;9909;9910;9911;9912;9913 9899 15 AGIGINAGR Unmodified 827.46135 0.46134987 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.669 16.478 2 0.0066986 4549 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 69.998 30.78 1500500000 88720000 91889000 75966000 1917100 2119600 2149700 122860000 139390000 121570000 0 0 0 112870000 94311000 97632000 0 0 0 189320000 181710000 175600000 0 0 2517100 826 29 803 16155;16156;16157;16158;16159;16160;16161;16162;16163;16164;16165;16166;16167;16168;16169;16170 9914;9915;9916;9917;9918;9919;9920 9915 2 AGIIRPVLDPAR Unmodified 1276.7616 0.76155464 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 1 1 2 2 2 24.986 24.082 2;3 3.2193E-05 10795 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 103.2 100.08 2632400000 253270000 222470000 230060000 0 0 0 218320000 209960000 204600000 0 0 0 188190000 174690000 192900000 1391400 1449700 1847500 225500000 251890000 255830000 0 0 0 827 1143 804 16171;16172;16173;16174;16175;16176;16177;16178;16179;16180;16181;16182;16183;16184;16185;16186;16187;16188;16189;16190;16191;16192;16193;16194;16195;16196;16197;16198;16199 9921;9922;9923;9924;9925;9926;9927;9928;9929;9930;9931;9932;9933;9934;9935;9936;9937;9938;9939;9940;9941;9942;9943;9944;9945;9946 9927 26 AGILAQVPAGR Unmodified 1051.6138 0.61382777 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.302 25.192 2 1.5345E-05 11508 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.39 138.38 9213800000 612890000 596940000 552370000 6385700 6367700 6601400 785670000 740910000 683670000 4148000 3846000 3666600 879440000 754420000 789470000 4536200 3169000 3456400 941070000 907560000 913190000 4639900 4102000 5326900 828 868 805 16200;16201;16202;16203;16204;16205;16206;16207;16208;16209;16210;16211;16212;16213;16214;16215;16216;16217;16218;16219;16220;16221;16222;16223 9947;9948;9949;9950;9951;9952;9953;9954;9955;9956;9957;9958;9959;9960;9961;9962;9963;9964;9965;9966;9967;9968;9969;9970 9954 24 AGIPLALNK Unmodified 895.5491 0.54910224 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.506 27.258 2 0.00012088 12985 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.47 116.18 854970000 41810000 38541000 35784000 0 0 0 78159000 81197000 81386000 0 0 0 53841000 62022000 66970000 0 0 0 101610000 99506000 114150000 0 0 0 829 1497 806 16224;16225;16226;16227;16228;16229;16230;16231;16232;16233;16234;16235 9971;9972;9973;9974;9975;9976;9977;9978;9979;9980 9971 10 AGIPWAIVTSGSMPVAR Unmodified 1711.908 0.90796088 1922 P77625 yfbT Sugar phosphatase YfbT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 51.122 49.863 2;3 1.0803E-10 24165 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.49 140.75 334960000 26505000 17581000 26132000 0 0 0 34129000 35191000 36615000 0 0 0 25995000 25925000 22336000 0 0 0 30389000 29393000 24770000 0 0 0 830 1922 807 16236;16237;16238;16239;16240;16241;16242;16243;16244;16245;16246;16247;16248;16249;16250;16251;16252;16253;16254;16255;16256;16257;16258 9981;9982;9983;9984;9985;9986;9987;9988 9986 8 AGIQPIPGR Unmodified 907.52395 0.52395013 961 P0AFR2 dauA C4-dicarboxylic acid transporter DauA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.916 19.204 2 0.098316 5908 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 49.358 22.238 102970000 0 0 0 0 0 0 11599000 13667000 11623000 5238000 4037900 3632200 7815100 7908500 6243800 0 0 0 9998300 7625900 6420700 2561300 2500300 2097300 831 961 808 16259;16260;16261;16262;16263;16264;16265;16266;16267;16268;16269;16270;16271;16272;16273 9989 9989 0 AGITFATHLYNAMPYITGR Unmodified 2096.0513 0.051330649 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 46.533 45.116 3 0.0069635 21981 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 47.082 43.938 97694000 17960000 12744000 12478000 0 0 0 7747800 0 8161500 0 0 0 4561700 6160700 5197100 0 0 0 9031200 6848400 6803400 0 0 0 832 904 809 16274;16275;16276;16277;16278;16279;16280;16281;16282;16283;16284 9990;9991 9990 0 AGIVEFAQALSAR Unmodified 1331.7197 0.7197494 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 2 2 2 2 2 2 45.888 44.462 2;3 4.9582E-09 21798 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.69 79.116 1230100000 304180000 326510000 345670000 1514500 0 1983900 19186000 18075000 17973000 0 0 0 27323000 25270000 24840000 0 0 0 38137000 37378000 42083000 0 0 0 833 1111 810 16285;16286;16287;16288;16289;16290;16291;16292;16293;16294;16295;16296;16297;16298;16299;16300;16301;16302;16303;16304;16305;16306;16307 9992;9993;9994;9995;9996;9997 9992 5 AGIVGADGQTHQGAFDLSYLR Unmodified 2175.0709 0.070880117 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.593 37.952 3 6.7954E-28 15394 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 162.65 158.93 746170000 57663000 0 0 11612000 13498000 13318000 66721000 56716000 60511000 25972000 30215000 24577000 0 47274000 51912000 9338500 5718400 6610600 61099000 67838000 75255000 20700000 19833000 19786000 834 1909 811 16308;16309;16310;16311;16312;16313;16314;16315;16316;16317;16318;16319;16320;16321;16322;16323;16324;16325;16326;16327;16328;16329 9998;9999;10000;10001;10002;10003;10004;10005;10006;10007;10008;10009;10010 9998 13 AGIVNWNKPLTGAASTAPFGGIGASGNHR Unmodified 2820.442 0.44195842 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 36.965 35.525 4 5.3191E-06 17105 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.847 74.271 216620000 76861000 89506000 50249000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 835 1835 812 16330;16331;16332 10011;10012 10011 2 AGKEEAHGAPLGEEEVALAR Unmodified 2033.0178 0.017781914 1423 P33570 tktB Transketolase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 2 3 2 2 2 2 19.977 20.422 2;3;4 4.1419E-37 7823 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 253.36 243.93 1985300000 330810000 327610000 336470000 1142800 822820 970590 241060000 226840000 192320000 0 0 0 47849000 49123000 35698000 0 0 0 66861000 61231000 66537000 0 0 0 836 1423 813 16333;16334;16335;16336;16337;16338;16339;16340;16341;16342;16343;16344;16345;16346;16347;16348;16349;16350;16351;16352;16353;16354;16355;16356;16357;16358;16359;16360;16361;16362;16363;16364;16365;16366 10013;10014;10015;10016;10017;10018;10019;10020;10021;10022;10023;10024;10025;10026;10027;10028;10029;10030;10031;10032;10033;10034;10035;10036;10037;10038;10039;10040;10041;10042;10043 10037 31 AGKPLLIIAEDVEGEALATLVVNTMR Unmodified 2722.4939 0.49390214 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 2 1 2 3 2 1 1 1 2 2 2 1 2 2 55.888 54.561 3;4 3.7952E-11 21179 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 131.94 128.89 7152300000 389820000 580470000 914830000 61674000 59023000 78979000 119370000 23611000 126200000 4225100 10895000 15809000 654070000 739220000 627480000 6800400 12276000 12300000 525940000 999530000 1089300000 14738000 41320000 44410000 837 240 814 16367;16368;16369;16370;16371;16372;16373;16374;16375;16376;16377;16378;16379;16380;16381;16382;16383;16384;16385;16386;16387;16388;16389;16390;16391;16392;16393;16394;16395;16396;16397;16398;16399;16400;16401;16402;16403;16404;16405;16406;16407;16408;16409 10044;10045;10046;10047;10048;10049;10050;10051;10052;10053;10054;10055;10056;10057;10058;10059;10060;10061;10062;10063;10064;10065;10066;10067;10068;10069 10045 26 AGKPVETVPQIFVDQQHIGGYTDFAAWVK Unmodified 3200.6295 0.62948441 1722 P68688 grxA Glutaredoxin-1 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.33 48.924 3 4.2135E-06 23013 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 82.904 80.95 144880000 11518000 13431000 6684200 0 0 0 9301800 11193000 8916200 0 0 0 13107000 12917000 10553000 0 0 0 13398000 18076000 15786000 0 0 0 838 1722 815 16410;16411;16412;16413;16414;16415;16416;16417;16418;16419;16420;16421 10070 10070 1 AGLADPNRPIGSFLFLGPTGVGK Unmodified 2283.2376 0.23755152 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 50.6 49.383 2;3 5.005E-35 24420 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 214.5 212.61 3518200000 392210000 382900000 372960000 10298000 0 0 358040000 424230000 438040000 18461000 18527000 16028000 175200000 169940000 157430000 3304500 3964200 4986200 188680000 207430000 175540000 0 0 0 839 1662 816 16422;16423;16424;16425;16426;16427;16428;16429;16430;16431;16432;16433;16434;16435;16436;16437;16438;16439;16440;16441;16442;16443;16444;16445;16446;16447;16448;16449;16450;16451;16452 10071;10072;10073;10074;10075;10076;10077;10078;10079;10080;10081;10082;10083;10084;10085;10086;10087;10088;10089;10090;10091;10092;10093;10094;10095;10096;10097;10098 10078 27 AGLANLK Unmodified 685.41227 0.41227441 1074 P11880 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 14.771 15.517 1 0.070106 5192 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.935 46.249 55712000 5800100 8757100 7703300 0 0 0 5439000 7607700 0 0 0 0 0 5848100 5770900 0 0 0 8786100 0 0 0 0 0 840 1074 817 16453;16454;16455;16456;16457;16458;16459;16460 10099 10099 0 AGLAVASMK Unmodified 846.46332 0.4633237 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 18.992 19.581 2 0.0025489 7446 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.743 49.638 121990000 22195000 16052000 13644000 0 0 0 8928400 9895400 0 0 0 0 9826400 6628500 7284400 0 0 0 9307700 8974800 9249900 0 0 0 841 1758 818 16461;16462;16463;16464;16465;16466;16467;16468;16469;16470;16471 10100;10101;10102;10103;10104;10105;10106;10107 10103 8 AGLDPEQPPK Unmodified 1050.5346 0.53457439 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.48 16.323 2 0.00012302 5527 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.36 109.63 9829200000 74600000 74934000 65009000 917950 846890 562970 842090000 839010000 828740000 0 0 0 987130000 830660000 694150000 0 0 0 1544500000 1499900000 1546200000 0 0 0 842 993 819 16472;16473;16474;16475;16476;16477;16478;16479;16480;16481;16482;16483;16484;16485;16486 10108;10109;10110;10111;10112;10113;10114;10115;10116;10117;10118;10119 10110 11 AGLDPEQPPKTWQDLADYAAK Unmodified 2313.1277 0.12772629 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 42.812 41.197 3 0.0045058 14604 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 48.229 41.128 10914000 0 0 0 3430000 2608700 2840400 0 0 0 0 0 0 0 0 0 0 0 0 0 2034900 0 0 0 0 843 993 820 16487;16488;16489;16490 10120;10121;10122 10121 3 AGLEDHFMGK Unmodified 1103.507 0.50697943 866 P0AEJ6 eutB Ethanolamine ammonia-lyase heavy chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.978 21.301 3 0.16993 8127 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 12.578 10.542 70616000 8430400 7710300 7394800 0 0 0 5152000 4716300 4479000 0 0 0 4132000 6186600 5008700 0 0 0 5326000 7339900 4739500 0 0 0 844 866 821 16491;16492;16493;16494;16495;16496;16497;16498;16499;16500;16501;16502 10123 10123 1 AGLENQLPHHFK Unmodified 1389.7153 0.71533272 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 16.279 17.004 2;3 2.8833E-06 6092 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 179.36 167.12 741520000 51299000 52391000 40109000 0 0 0 159130000 136270000 147720000 4862300 0 3568600 21928000 20005000 17453000 0 1816400 0 29268000 26250000 29445000 0 0 0 845 522 822 16503;16504;16505;16506;16507;16508;16509;16510;16511;16512;16513;16514;16515;16516;16517;16518;16519;16520;16521;16522;16523;16524;16525;16526;16527;16528;16529 10124;10125;10126;10127;10128;10129;10130;10131;10132;10133;10134;10135 10124 11 AGLGHEHKPVGSFLFAGPTGVGK Unmodified 2262.1909 0.19093567 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 27.068 25.735 3;4 2.8954E-10 11584 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.62 118.26 501480000 76713000 67652000 52574000 2671100 2711500 0 39916000 43120000 33517000 20352000 16252000 13689000 21872000 20009000 17943000 0 0 0 25772000 25101000 18173000 0 3442100 0 846 658 823 16530;16531;16532;16533;16534;16535;16536;16537;16538;16539;16540;16541;16542;16543;16544;16545;16546;16547;16548;16549;16550;16551;16552;16553;16554;16555;16556;16557;16558;16559;16560;16561;16562 10136;10137;10138;10139;10140;10141;10142;10143 10141 8 AGLGMMDGVLENVPSAR Unmodified 1715.8335 0.8334753 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 46.796 45.362 2;3 2.0619E-10 18467 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 142.12 113.41 8293500000 857480000 854340000 796270000 10598000 10873000 11451000 345100000 321310000 306530000 15540000 15551000 17923000 758400000 732440000 661750000 4898800 3235200 2591300 933850000 883600000 727910000 5745600 8157600 7907100 847 424 824 16563;16564;16565;16566;16567;16568;16569;16570;16571;16572;16573;16574;16575;16576;16577;16578;16579;16580;16581;16582;16583;16584;16585;16586;16587;16588;16589;16590;16591;16592;16593;16594;16595;16596;16597;16598;16599;16600;16601;16602;16603;16604;16605 10144;10145;10146;10147;10148;10149;10150;10151;10152;10153;10154;10155;10156;10157;10158;10159 10144 14 AGLGMMDGVLENVPSAR Oxidation (M) 1731.8284 0.82838993 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 2 2 2 1 2 2 40.754 39.116 2 1.2482E-06 18420 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 91.858 78.195 110690000 0 0 6395700 0 0 0 9035700 8636800 7487000 0 0 0 13878000 13999000 10388000 0 0 0 6931400 17863000 16076000 0 0 0 848 424 824 16606;16607;16608;16609;16610;16611;16612;16613;16614;16615;16616;16617;16618;16619;16620;16621 10160;10161;10162;10163;10164;10165;10166;10167;10168;10169 10167 208 9 AGLIGFSK Unmodified 791.45414 0.45413923 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.09 25.912 2 0.011257 8576 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 77.058 60.131 3093700000 187190000 169690000 174210000 4813500 3372200 3089300 236840000 272410000 272610000 3391700 3539000 3285000 267480000 237200000 231660000 1200800 2796700 3142900 329240000 314760000 362650000 2578400 3069000 3467300 849 868 825 16622;16623;16624;16625;16626;16627;16628;16629;16630;16631;16632;16633;16634;16635;16636;16637;16638;16639;16640;16641;16642;16643;16644;16645 10170;10171;10172;10173;10174;10175;10176;10177;10178;10179;10180;10181;10182;10183;10184;10185;10186 10179 17 AGLINSGGAAGGETDLSDAVR Unmodified 1929.9392 0.93919724 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.33 31.816 2 3.6799E-43 14984 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 312.25 304.49 311390000 40171000 31146000 31890000 1505800 1155000 1421800 55999000 53653000 52904000 0 0 1688900 6409100 4624300 4372800 0 0 0 7854600 7345200 9248900 0 0 0 850 498 826 16646;16647;16648;16649;16650;16651;16652;16653;16654;16655;16656;16657;16658;16659;16660;16661 10187;10188;10189;10190;10191;10192;10193 10192 7 AGLINSGGAAGGETDLSDAVRTAVINKR Unmodified 2712.4155 0.41546889 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 36.115 34.541 4 0.0015083 16941 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 52.971 43.254 77424000 12070000 9620400 7889000 0 0 0 0 27887000 19958000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 851 498 827 16662;16663;16664;16665;16666 10194 10194 1 AGLLHEDVNTVAGFGLSR Unmodified 1854.9588 0.95881047 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 38.634 36.81 2;3 8.5232E-23 17845 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 244.71 228.96 484480000 0 0 0 0 0 395310 95008000 83962000 88250000 1137100 1527600 1346200 62908000 62798000 46003000 0 1071200 0 10716000 15284000 9067800 1598600 1533800 1879200 852 785 828 16667;16668;16669;16670;16671;16672;16673;16674;16675;16676;16677;16678;16679;16680;16681;16682;16683;16684;16685;16686;16687;16688;16689 10195;10196;10197;10198;10199;10200;10201;10202;10203;10204;10205 10200 11 AGLMLFNALVGKPEFR Unmodified 1761.96 0.95999645 1696 P64606 mlaE Probable phospholipid ABC transporter permease protein MlaE yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 50.517 49.131 3 8.0451E-05 23876 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 78.69 73.635 66238000 0 0 0 0 0 0 5046200 5558400 2462300 0 0 3859100 5294100 5824800 7178700 0 0 0 10303000 9654000 9084000 0 1972700 0 853 1696 829 16690;16691;16692;16693;16694;16695;16696;16697;16698;16699;16700 10206 10206 1 AGLMPADEAIAK Unmodified 1185.6064 0.60635913 268 P0A6P5 der GTPase Der yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 27.131 26.123 2 0.083325 11794 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 50.292 41.429 178570000 42004000 38805000 39215000 0 0 0 0 0 7158400 0 0 0 12970000 16123000 11624000 0 0 0 0 0 10669000 0 0 0 854 268 830 16701;16702;16703;16704;16705;16706;16707;16708 10207;10208;10209 10208 3 AGLNEINLPELQAGSSIMPAK Unmodified 2152.1198 0.11980414 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 49.982 48.576 2;3 2.6765E-22 24093 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.1 172.66 3889500000 224690000 201880000 195600000 0 0 0 404820000 379310000 390720000 0 0 0 415070000 362690000 401510000 0 0 0 301780000 299520000 311880000 0 0 0 855 697 831 16709;16710;16711;16712;16713;16714;16715;16716;16717;16718;16719;16720;16721;16722;16723;16724;16725;16726;16727;16728;16729;16730;16731;16732 10210;10211;10212;10213;10214;10215;10216;10217;10218;10219;10220;10221;10222;10223;10224;10225;10226;10227;10228;10229;10230;10231;10232;10233 10211 24 AGLPAQVMIDFSHANSSK Unmodified 1871.92 0.91998213 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 39.094 37.461 2;3 4.5117E-22 18153 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 235.31 212.98 2221900000 397900000 346320000 374900000 5050800 6351800 5191000 106440000 97297000 108630000 6767100 7048100 8231200 116720000 93283000 98782000 4058600 3103200 2950500 140280000 132800000 142140000 6167500 4957700 6571700 856 639 832 16733;16734;16735;16736;16737;16738;16739;16740;16741;16742;16743;16744;16745;16746;16747;16748;16749;16750;16751;16752;16753;16754;16755;16756;16757;16758;16759;16760;16761;16762;16763;16764;16765;16766;16767;16768 10234;10235;10236;10237;10238;10239;10240;10241;10242;10243;10244;10245;10246;10247;10248;10249 10245 14 AGLPNSSNALQQWHHLFEAEGTK Unmodified 2534.2302 0.23023431 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.942 39.277 4 4.7017E-07 19575 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.08 104.24 192820000 21372000 19372000 17317000 0 0 0 28340000 21152000 23644000 0 0 0 7428200 8968300 9470200 0 0 0 12910000 10091000 12753000 0 0 0 857 1926 833 16769;16770;16771;16772;16773;16774;16775;16776;16777;16778;16779;16780 10250;10251;10252;10253;10254;10255;10256;10257;10258;10259 10251 10 AGLPVNGPR Unmodified 879.49265 0.49265 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 16.861 17.6 2 0.00062659 6266 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 105.39 80.392 176450000 21803000 18583000 16724000 0 0 0 19736000 18494000 17295000 0 0 0 8611400 0 8932600 0 0 0 13665000 16067000 16543000 0 0 0 858 164 834 16781;16782;16783;16784;16785;16786;16787;16788;16789;16790;16791 10260;10261;10262;10263;10264;10265 10262 5 AGLSVDGVFNLTNIDR Unmodified 1689.8686 0.86859848 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 2 2 2 2 2 2 1 1 1 39.108 38.097 2;3 3.2245E-11 20152 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 152.14 135.51 1491300000 254310000 270600000 254570000 1369000 1342000 1388600 44430000 41314000 47184000 0 657660 0 61237000 59136000 55463000 0 0 0 133120000 123570000 131150000 5859100 4605900 0 859 65 835 16792;16793;16794;16795;16796;16797;16798;16799;16800;16801;16802;16803;16804;16805;16806;16807;16808;16809;16810;16811;16812;16813;16814;16815;16816;16817;16818;16819 10266;10267;10268;10269;10270;10271;10272;10273;10274;10275;10276;10277 10268 8 AGLTFLVDLIK Unmodified 1188.7118 0.71181048 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 2 2 2 2 2 2 1 2 1 1 1 55.316 53.861 2 1.9816E-05 26537 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 136.57 96.499 12877000000 245040000 232860000 254190000 5777800 6783300 7378000 1142300000 1099200000 1018200000 0 0 0 1372400000 1188800000 1277100000 0 0 0 1693500000 1751200000 1560700000 5680700 7989700 8439600 860 895 836 16820;16821;16822;16823;16824;16825;16826;16827;16828;16829;16830;16831;16832;16833;16834;16835;16836;16837;16838;16839;16840;16841;16842;16843;16844;16845;16846 10278;10279;10280;10281;10282;10283;10284;10285;10286;10287;10288;10289;10290;10291;10292;10293;10294;10295;10296 10280 19 AGLTHISILSDALSEPSR Unmodified 1865.9847 0.98469087 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 2 1 39.947 38.262 2;3 7.1706E-29 17736 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 257.02 253.49 479850000 4317200 4837900 0 0 0 0 22201000 17813000 20576000 0 0 0 29567000 26853000 25595000 0 0 0 17421000 292740000 17930000 0 0 0 861 1947 837 16847;16848;16849;16850;16851;16852;16853;16854;16855;16856;16857;16858;16859 10297;10298;10299;10300;10301;10302;10303;10304;10305;10306;10307 10307 11 AGLTLGVDPLGGSGIEYWK Unmodified 1931.9993 0.9992783 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 53.888 52.447 2 2.8892E-18 25553 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 217.88 212.9 1506000000 144530000 129340000 125010000 0 0 0 99774000 109380000 96098000 0 0 0 150310000 148740000 127040000 0 0 0 116800000 129000000 129990000 0 0 0 862 1450 838 16860;16861;16862;16863;16864;16865;16866;16867;16868;16869;16870;16871;16872 10308;10309;10310;10311;10312;10313;10314;10315;10316;10317;10318;10319 10313 12 AGLVAPDETTFNYVK Unmodified 1623.8144 0.81443765 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.241 36.503 2 3.0884E-06 17558 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 108.31 104.14 405690000 113290000 96023000 105390000 999520 988260 1002400 6945100 9550500 8383600 0 0 0 9657800 8951500 7663400 0 0 0 10136000 11576000 13135000 805290 673300 520920 863 225 839 16873;16874;16875;16876;16877;16878;16879;16880;16881;16882;16883;16884;16885;16886;16887;16888;16889;16890 10320;10321;10322;10323;10324;10325;10326;10327;10328;10329;10330 10327 11 AGLVDFAELLLR Unmodified 1315.75 0.7499869 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 55.938 55.994 2 6.9993E-17 21994 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 212.03 198.26 328860000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 104320000 89782000 134760000 0 0 0 0 0 0 864 80 840 16891;16892;16893 10331;10332;10333 10331 3 AGLVDILGASGAENVQGEVQQK Unmodified 2182.123 0.12297527 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 2 45.955 44.415 2;3 2.7806E-88 22041 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 318.74 315.54 1655200000 89646000 90682000 82034000 2561600 1725800 2413500 148740000 136460000 120290000 0 0 1589600 153260000 136290000 124590000 0 0 0 194550000 192550000 167480000 4170100 6116000 0 865 499 841 16894;16895;16896;16897;16898;16899;16900;16901;16902;16903;16904;16905;16906;16907;16908;16909;16910;16911;16912;16913;16914;16915;16916;16917;16918;16919;16920;16921;16922;16923;16924 10334;10335;10336;10337;10338;10339;10340;10341;10342;10343;10344;10345;10346;10347;10348;10349;10350 10334 17 AGLVELVEINHVHR Unmodified 1584.8736 0.87362428 488 P0A951 speG Spermidine N(1)-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 2 1 2 2 1 1 2 2 2 2 2 2 1 1 1 30.538 29.096 2;3;4 5.8178E-07 13073 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 103.88 98.263 478460000 77102000 75116000 57629000 834700 915360 2037500 10070000 20334000 18239000 1088000 0 1513500 25524000 27245000 27052000 0 0 0 45515000 40061000 43824000 1705800 1167900 1482700 866 488 842 16925;16926;16927;16928;16929;16930;16931;16932;16933;16934;16935;16936;16937;16938;16939;16940;16941;16942;16943;16944;16945;16946;16947;16948;16949;16950;16951;16952;16953;16954;16955;16956;16957;16958;16959 10351;10352;10353;10354;10355;10356;10357;10358;10359;10360;10361;10362;10363;10364;10365;10366;10367 10365 16 AGLVGFSVSNLR Unmodified 1218.6721 0.67207093 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.208 38.543 2 8.1069E-06 18520 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 131.44 118.39 354160000 84898000 82553000 71715000 0 0 0 8519000 9975400 6715700 0 0 0 12212000 14685000 10640000 0 0 0 16267000 18356000 17622000 0 0 0 867 1107 843 16960;16961;16962;16963;16964;16965;16966;16967;16968;16969;16970;16971 10368;10369;10370;10371;10372;10373 10370 6 AGMAEYQR Unmodified 924.41235 0.41235077 1411 P33219 yebF Protein YebF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.425 13.088 2 0.0436 3576 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 65.252 57.581 842940000 109150000 95843000 103860000 0 0 0 70213000 74683000 54977000 981470 1238000 1054000 39662000 33680000 29330000 0 0 0 78974000 78364000 67211000 0 1306400 2409900 868 1411 844 16972;16973;16974;16975;16976;16977;16978;16979;16980;16981;16982;16983;16984;16985;16986;16987;16988 10374;10375 10374 0 AGMAVGLAGLFIEAHPDPEHAK Unmodified 2230.1205 0.12047285 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 3 3 4 1 3 4 3 3 3 2 44.07 42.534 2;3;4 4.0267E-11 19770 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 138.77 131.22 4209500000 410700000 336750000 323220000 0 0 0 431050000 341690000 362910000 0 3180500 0 384050000 328120000 387340000 0 0 0 386110000 110030000 404310000 0 0 0 869 299 845 16989;16990;16991;16992;16993;16994;16995;16996;16997;16998;16999;17000;17001;17002;17003;17004;17005;17006;17007;17008;17009;17010;17011;17012;17013;17014;17015;17016;17017;17018;17019;17020;17021;17022;17023;17024;17025;17026;17027;17028 10376;10377;10378;10379;10380;10381;10382;10383;10384;10385;10386;10387;10388;10389;10390;10391;10392;10393;10394;10395;10396;10397 10394 21 AGMDSHGFGMASVR Unmodified 1421.618 0.61800322 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.592 22.038 2;3 1.0926E-19 9659 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 247.3 241.82 3475900000 355920000 329900000 298470000 0 0 0 310830000 312770000 279330000 0 0 0 233780000 245710000 251550000 0 0 0 280320000 275630000 301640000 0 0 0 870 635 846 17029;17030;17031;17032;17033;17034;17035;17036;17037;17038;17039;17040;17041;17042;17043;17044;17045;17046;17047;17048;17049;17050;17051;17052 10398;10399;10400;10401;10402;10403;10404;10405;10406;10407;10408;10409;10410;10411;10412;10413;10414;10415 10400 18 AGMIVVNVNPLYTPR Unmodified 1642.8865 0.88649715 1734 P69451 fadD Long-chain-fatty-acid--CoA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.829 44.543 2 1.0241E-05 21685 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.01 96.119 113120000 19272000 19162000 18665000 1429300 1195800 1021200 4294700 5504800 5435900 0 0 0 6390200 4870500 4780000 0 808710 784610 5657700 7016000 6831900 0 0 0 871 1734 847 17053;17054;17055;17056;17057;17058;17059;17060;17061;17062;17063;17064;17065;17066;17067;17068;17069 10416 10416 1 AGMNPVDYTVK Unmodified 1193.5751 0.575059 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.224 25.085 2 0.0003166 10780 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 101.46 95.978 1003900000 27663000 21432000 21319000 5452900 6050200 4584900 69359000 59891000 60171000 23913000 23970000 23563000 52717000 48170000 36025000 6484700 3596800 3979100 85139000 94616000 70008000 84010000 88076000 83703000 872 205 848 17070;17071;17072;17073;17074;17075;17076;17077;17078;17079;17080;17081;17082;17083;17084;17085;17086;17087;17088;17089;17090;17091;17092;17093 10417;10418;10419;10420;10421;10422;10423;10424;10425;10426;10427;10428;10429;10430;10431;10432;10433;10434;10435 10434 18 AGMVAGVIVNR Unmodified 1085.6015 0.60154852 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 3 2 4 1 1 1 4 4 3 1 1 1 3 2 2 1 1 27.538 26.354 2;3 3.0267E-10 11882 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 187.34 153.25 15394000000 461620000 408540000 361480000 6653300 5987000 5970300 2221600000 2131700000 2099900000 7722800 7796200 0 1186300000 1324300000 1187600000 4116600 3432700 3249900 1325300000 1365300000 1270800000 2504000 0 2350100 873 1079 849 17094;17095;17096;17097;17098;17099;17100;17101;17102;17103;17104;17105;17106;17107;17108;17109;17110;17111;17112;17113;17114;17115;17116;17117;17118;17119;17120;17121;17122;17123;17124;17125;17126;17127;17128;17129;17130;17131;17132;17133;17134;17135 10436;10437;10438;10439;10440;10441;10442;10443;10444;10445;10446;10447;10448;10449;10450;10451;10452;10453;10454;10455;10456;10457;10458;10459;10460;10461;10462;10463;10464;10465;10466;10467;10468;10469;10470;10471;10472;10473;10474;10475;10476;10477;10478;10479;10480;10481;10482;10483;10484;10485;10486;10487;10488;10489;10490;10491;10492;10493;10494 10442 56 AGMVAGVIVNR Oxidation (M) 1101.5965 0.59646314 1079 P12758 udp Uridine phosphorylase yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 6 2 4 1 3 4 3 3 2 23.261 22.808 2 6.3044E-07 8974 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 123.69 98.6 455280000 0 1971500 1782600 0 0 0 140850000 44851000 157120000 0 0 0 6391100 17997000 21725000 0 0 0 41560000 8788400 12236000 0 0 0 874 1079 849 17136;17137;17138;17139;17140;17141;17142;17143;17144;17145;17146;17147;17148;17149;17150;17151;17152;17153;17154;17155;17156;17157;17158;17159;17160;17161;17162;17163;17164;17165 10495;10496;10497;10498;10499;10500;10501;10502;10503;10504;10505;10506;10507;10508;10509;10510;10511;10512;10513;10514 10498 480 16 AGMVAGVIVNRTQQEIPNAETMK Unmodified 2456.2516 0.25156337 1079 P12758 udp Uridine phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.151 32.633 3 0.0044562 15850 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 49.497 47.609 289120000 0 0 0 0 0 0 65905000 63512000 62600000 0 0 0 22538000 28525000 23762000 0 0 0 8193300 7192500 6896300 0 0 0 875 1079 850 17166;17167;17168;17169;17170;17171;17172;17173;17174 10515;10516 10516 2 AGMYTTVQDGGR Unmodified 1254.5663 0.56628523 1767 P75745 ybgK Uncharacterized protein YbgK yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 16.78 17.455 2 0.0016342 6266 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.847 55.58 53411000 15961000 15172000 18959000 0 0 0 0 0 3320200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 876 1767 851 17175;17176;17177;17178 10517 10517 1 AGNCSLEEVIMAIK Unmodified 1533.7531 0.75309972 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 50.332 48.953 2 2.5808E-05 23937 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.32 89.752 115430000 37021000 32097000 30238000 0 0 0 0 4769800 0 0 0 0 0 4452500 0 0 0 0 6853200 0 0 0 0 0 877 204 852 17179;17180;17181;17182;17183;17184 10518 10518 1 AGNEYAK Unmodified 751.35007 0.35006808 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 5.9187 6.7579 1;2 0.0015598 1563 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 127.84 110.08 1574000000 250300000 224390000 247330000 0 0 0 87903000 81360000 97634000 0 0 0 78976000 66456000 65072000 0 0 0 123820000 137230000 113540000 0 0 0 878 1444 853 17185;17186;17187;17188;17189;17190;17191;17192;17193;17194;17195;17196;17197;17198;17199 10519;10520;10521;10522;10523;10524;10525;10526;10527;10528;10529;10530;10531;10532 10529 12 AGNGETILTSELYTSK Unmodified 1682.8363 0.8362953 1855 P76402 yegP UPF0339 protein YegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 35.705 34.043 2 5.3011E-11 16601 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 193.81 184.13 431590000 124810000 128920000 105070000 0 0 0 24996000 24974000 22819000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 879 1855 854 17200;17201;17202;17203;17204;17205 10533;10534;10535;10536;10537;10538 10535 6 AGNTIGQLFR Unmodified 1075.5774 0.57744226 1075 P12008 aroC Chorismate synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.326 30.987 2 1.7998E-06 14410 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 161.02 127.28 333290000 51196000 53895000 45334000 0 0 0 18945000 15744000 19680000 0 0 0 15767000 16364000 15385000 0 0 0 29824000 22932000 28222000 0 0 0 880 1075 855 17206;17207;17208;17209;17210;17211;17212;17213;17214;17215;17216;17217 10539;10540;10541 10541 3 AGNTNVIHMHGELLK Unmodified 1632.8406 0.84060959 1799 P75960 cobB NAD-dependent protein deacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.757 19.257 2 5.889E-15 7230 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 187.11 168.37 68174000 9234700 8616700 6821600 0 0 0 5697000 4747600 3343700 0 0 0 4705000 5575300 5304100 0 0 0 3087800 4767800 5412400 0 567630 293350 881 1799 856 17218;17219;17220;17221;17222;17223;17224;17225;17226;17227;17228;17229;17230;17231 10542;10543;10544;10545 10545 4 AGNVAADGVIK Unmodified 1013.5506 0.55055881 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.042 16.635 2 0.0001186 5673 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.3 90.199 18459000000 1155500000 1264000000 1068500000 5289200 5435300 5538000 1680200000 1861400000 1601800000 12796000 11593000 12150000 1395500000 1280300000 1199200000 4550600 0 3769900 2071500000 1971400000 1837100000 6639300 0 5058000 882 267 857 17232;17233;17234;17235;17236;17237;17238;17239;17240;17241;17242;17243;17244;17245;17246;17247;17248;17249;17250;17251;17252;17253;17254;17255 10546;10547;10548;10549;10550;10551;10552;10553;10554;10555;10556;10557;10558;10559 10556 14 AGPAGIR Unmodified 640.36566 0.36565857 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 11.521 12.22 1 0.029572 3194 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.141 82.141 19682000 5390600 7902200 6389200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 883 118 858 17256;17257;17258 10560 10560 1 AGPGSLGPVNMPIPVVIDR Unmodified 1888.0241 0.024053266 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 2 2 2 2 2 2 52.039 50.795 2;3 2.9591E-29 24562 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 259 242.06 4848700000 362500000 324500000 315870000 2552700 0 0 427680000 408720000 308780000 0 0 0 451530000 427420000 403060000 0 0 0 492300000 463450000 460310000 0 0 0 884 1120 859 17259;17260;17261;17262;17263;17264;17265;17266;17267;17268;17269;17270;17271;17272;17273;17274;17275;17276;17277;17278;17279;17280;17281;17282 10561;10562;10563;10564;10565;10566;10567;10568;10569;10570;10571;10572;10573;10574;10575;10576;10577;10578;10579;10580;10581;10582;10583 10570 23 AGPLAGYPVVDMGIR Unmodified 1514.7915 0.79153413 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1 2 2 2 2 1 1 2 2 2 2 2 1 1 2 2 2 2 2 1 45.765 44.316 2;3 2.444E-11 21676 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 161.67 143.81 31334000000 3049900000 2683200000 2672900000 19116000 20607000 23833000 2056700000 1972600000 1871700000 25905000 24073000 27164000 2510400000 2492800000 2274600000 16929000 10161000 9458700 3122500000 3289900000 3107700000 18232000 16317000 17659000 885 264 860 17283;17284;17285;17286;17287;17288;17289;17290;17291;17292;17293;17294;17295;17296;17297;17298;17299;17300;17301;17302;17303;17304;17305;17306;17307;17308;17309;17310;17311;17312;17313;17314;17315;17316;17317;17318;17319;17320;17321;17322;17323;17324;17325 10584;10585;10586;10587;10588;10589;10590;10591;10592;10593;10594;10595;10596;10597;10598;10599;10600;10601;10602;10603;10604;10605;10606;10607;10608;10609;10610;10611;10612;10613;10614;10615;10616;10617;10618;10619;10620;10621;10622;10623;10624;10625;10626;10627;10628 10614 45 AGPLAGYPVVDMGIR Oxidation (M) 1530.7864 0.78644876 264 P0A6M8 fusA Elongation factor G yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 2 2 3 2 2 2 3 2 38.892 37.226 2 1.062E-05 18341 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 96.229 89.341 447260000 44638000 41866000 31982000 0 0 0 47060000 38160000 35018000 0 0 0 29127000 22692000 23997000 0 0 0 45253000 43000000 44463000 0 0 0 886 264 860 17326;17327;17328;17329;17330;17331;17332;17333;17334;17335;17336;17337;17338;17339;17340;17341;17342;17343;17344;17345;17346;17347;17348;17349;17350;17351;17352;17353 10629;10630;10631;10632;10633;10634;10635;10636;10637;10638;10639;10640;10641;10642;10643;10644;10645;10646;10647;10648;10649;10650;10651;10652;10653;10654;10655;10656;10657;10658;10659;10660;10661;10662;10663;10664;10665;10666 10639 108 36 AGPTWTPTAK Unmodified 1028.5291 0.52909508 617 P0AAX8 ybiS Probable L,D-transpeptidase YbiS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.901 19.439 2 0.00042077 7236 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.2 96.971 1113100000 94371000 81928000 64256000 0 1393000 0 120210000 102970000 87782000 0 0 0 78820000 77607000 64852000 0 0 0 112020000 120670000 105670000 0 0 575460 887 617 861 17354;17355;17356;17357;17358;17359;17360;17361;17362;17363;17364;17365;17366;17367 10667;10668;10669;10670;10671;10672;10673;10674;10675;10676;10677;10678 10674 12 AGQAHSHASLGWETFTDK Unmodified 1941.8969 0.8969385 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.652 22.104 3;4 4.23E-10 9480 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.97 127.12 281430000 27667000 23661000 19624000 0 0 0 28466000 26969000 29439000 0 0 0 18648000 6933900 18245000 0 0 0 26546000 28415000 26814000 0 0 0 888 1078 862 17368;17369;17370;17371;17372;17373;17374;17375;17376;17377;17378;17379;17380;17381;17382;17383;17384;17385;17386;17387;17388;17389;17390;17391 10679;10680;10681;10682;10683;10684;10685;10686;10687;10688;10689 10680 10 AGQEHLVAK Unmodified 951.51378 0.51377937 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.426 11.242 2 2.8407E-06 2477 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 176.6 81.941 2350900000 190600000 203240000 199150000 0 0 0 169040000 177440000 156420000 0 0 0 184270000 171180000 165850000 0 0 0 256490000 257240000 219960000 0 0 0 889 170 863 17392;17393;17394;17395;17396;17397;17398;17399;17400;17401;17402;17403 10690;10691;10692;10693;10694;10695;10696;10697;10698;10699;10700;10701 10699 12 AGQGDEQAQQLIHR Unmodified 1549.7597 0.75971673 1567 P45425 nanK N-acetylmannosamine kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 15.476 16.313 2 0.026578 5576 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 44.188 28.922 27147000 6835600 4931300 5379600 0 0 0 0 0 0 0 0 0 2795600 2225900 0 0 0 0 0 2234700 2744100 0 0 0 890 1567 864 17404;17405;17406;17407;17408;17409;17410 10702 10702 1 AGQLNPDTR Unmodified 970.48321 0.48320752 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 11.662 12.506 2 6.3864E-06 3165 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 171.73 163.39 1645300000 0 117970000 131570000 682430 0 0 217230000 205820000 192780000 0 0 0 153780000 0 117310000 0 0 0 173080000 181010000 154080000 0 0 0 891 702 865 17411;17412;17413;17414;17415;17416;17417;17418;17419;17420;17421 10703;10704;10705;10706;10707;10708;10709;10710 10710 8 AGQLSPGDPVLFR Unmodified 1355.7197 0.7197494 1563 P43671 pqiB Paraquat-inducible protein B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.274 35.356 2 0.075015 16372 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 42.395 37.43 55925000 0 3108200 2284800 0 0 0 5681700 5412400 5908200 1668400 1353700 1218800 0 3832400 3666800 0 0 0 7954900 6033200 7801400 0 0 0 892 1563 866 17422;17423;17424;17425;17426;17427;17428;17429;17430;17431;17432;17433;17434 10711;10712 10711 0 AGQNAMDATVLEITK Unmodified 1560.7818 0.78175731 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.339 35.952 2 6.7414E-17 14496 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 153.34 139.99 705220000 77358000 71097000 69936000 2943100 2599300 2482500 43487000 47052000 48092000 0 0 0 49226000 48441000 49962000 6475800 8041000 6992700 59840000 54964000 56228000 0 0 0 893 1576 867 17435;17436;17437;17438;17439;17440;17441;17442;17443;17444;17445;17446;17447;17448;17449;17450;17451;17452;17453;17454;17455;17456 10713;10714;10715;10716;10717;10718;10719;10720;10721;10722;10723;10724;10725;10726;10727;10728;10729;10730;10731;10732 10716 20 AGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVK Unmodified 3721.9064 0.90638756 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.669 46.271 4 6.744E-19 21757 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 135.45 133.84 886050000 74366000 83239000 75164000 0 0 0 90024000 88445000 88587000 0 0 0 54504000 50064000 45460000 0 0 0 75910000 78264000 82021000 0 0 0 894 1450 868 17457;17458;17459;17460;17461;17462;17463;17464;17465;17466;17467;17468 10733;10734;10735;10736;10737;10738;10739;10740;10741;10742;10743;10744 10742 12 AGQSVQFDVHQGPK Unmodified 1496.7372 0.73719038 494 P0A968 cspD Cold shock-like protein CspD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 1 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 16.354 16.981 2;3 1.8517E-19 6157 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.58 205.62 1849200000 48784000 46308000 40101000 1118000 0 0 240940000 254910000 236530000 0 1822300 2873900 221890000 194920000 187250000 10992000 8391700 9369500 130290000 97849000 113720000 0 0 1120900 895 494 869 17469;17470;17471;17472;17473;17474;17475;17476;17477;17478;17479;17480;17481;17482;17483;17484;17485;17486;17487;17488;17489;17490;17491;17492;17493;17494;17495;17496;17497;17498;17499;17500;17501 10745;10746;10747;10748;10749;10750;10751;10752;10753;10754;10755;10756;10757;10758;10759;10760;10761 10747 17 AGQTFTFTTDK Unmodified 1215.5772 0.57716749 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.08 23.945 2 2.7827E-07 10365 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.36 158.98 6440300000 468850000 469020000 397600000 1433300 1529300 1753200 612110000 641610000 630500000 4828500 3790100 3712200 498310000 526950000 468450000 0 0 0 545280000 585170000 576420000 1745000 1237600 0 896 771 870 17502;17503;17504;17505;17506;17507;17508;17509;17510;17511;17512;17513;17514;17515;17516;17517;17518;17519;17520;17521 10762;10763;10764;10765;10766;10767;10768;10769;10770;10771;10772;10773 10770 12 AGQTSMIAR Unmodified 933.4702 0.4702 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.835 13.491 2 3.7218E-08 4005 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.53 139.9 11600000000 1047600000 0 0 6696300 6544300 6699200 1557000000 1605500000 1547300000 9807600 7114600 7695300 969260000 849060000 920770000 2617400 3160500 0 995180000 1013100000 1038200000 0 0 6839800 897 634 871 17522;17523;17524;17525;17526;17527;17528;17529;17530;17531;17532;17533;17534;17535;17536;17537;17538;17539;17540;17541;17542 10774;10775;10776;10777;10778;10779;10780;10781;10782;10783;10784;10785;10786;10787 10785 13 AGQTSMIAR Oxidation (M) 949.46511 0.46511462 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.651 11.486 2 0.00081309 2786 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.909 71.707 1106600000 77934000 68311000 66134000 0 867150 0 204090000 174990000 171290000 0 0 0 84747000 70845000 78922000 0 0 0 0 0 108520000 0 0 0 898 634 871 17543;17544;17545;17546;17547;17548;17549;17550;17551;17552;17553;17554;17555 10788;10789;10790;10791;10792 10788 346 4 AGQVSFK Unmodified 735.39154 0.39153897 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.534 13.289 2 0.090397 3849 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 64.236 51.805 458090000 0 66196000 62476000 0 0 0 0 71663000 76269000 810520 0 0 23369000 25907000 21864000 0 0 0 39577000 37253000 31966000 0 738570 0 899 313 872 17556;17557;17558;17559;17560;17561;17562;17563;17564;17565;17566;17567 10793;10794 10793 0 AGQYAYR Unmodified 827.3926 0.3926016 354 P0A7L3 rplT 50S ribosomal protein L20 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.891 12.497 2 0.00037242 2743 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 155.88 152.99 2431000000 259560000 220200000 221440000 18257000 21505000 18655000 118910000 105680000 102000000 25130000 20820000 21769000 155160000 139830000 121900000 32262000 37918000 39741000 233870000 240200000 213740000 21051000 20411000 21010000 900 354 873 17568;17569;17570;17571;17572;17573;17574;17575;17576;17577;17578;17579;17580;17581;17582;17583;17584;17585;17586;17587;17588;17589;17590;17591 10795;10796;10797;10798;10799;10800;10801;10802;10803;10804;10805;10806;10807;10808;10809;10810;10811;10812;10813;10814 10805 20 AGQYLMVVMDER Unmodified 1410.6636 0.66355643 875 P0AEN1 fre NAD(P)H-flavin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 40.636 38.948 2 1.7974E-06 19288 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.11 138.18 408400000 41323000 37769000 34579000 773460 881390 765190 31063000 29159000 26088000 0 0 0 36106000 35528000 29429000 0 0 0 44717000 56633000 2814200 774540 0 0 901 875 874 17592;17593;17594;17595;17596;17597;17598;17599;17600;17601;17602;17603;17604;17605;17606;17607;17608;17609;17610 10815;10816;10817;10818;10819;10820;10821;10822;10823;10824 10815 10 AGQYSQFIWDFK Unmodified 1488.7038 0.70376498 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.559 47.227 2 2.4182E-08 23503 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 167.67 164.7 287570000 32145000 30527000 31472000 0 0 0 35958000 30596000 31324000 0 0 0 13792000 12072000 11147000 0 0 0 17093000 19568000 21880000 0 0 0 902 1282 875 17611;17612;17613;17614;17615;17616;17617;17618;17619;17620;17621;17622 10825;10826;10827;10828;10829;10830;10831;10832;10833 10825 9 AGREPSLEDLTSQQTEVELR Unmodified 2257.1186 0.11861817 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 35.247 34.001 3 1.6068E-07 11498 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 108.17 99.949 45625000 5511000 4182900 0 0 0 0 10660000 3982400 0 1701800 0 0 3025300 2712400 0 3528100 2571200 2317000 0 0 5432800 0 0 0 903 1355 876 17623;17624;17625;17626;17627;17628;17629;17630;17631;17632;17633 10834;10835;10836 10835 3 AGRPVLISTGDK Unmodified 1212.6826 0.68263561 37 P00582 polA DNA polymerase I yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.946 14.812 2 4.6961E-05 4457 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.25 93.822 112770000 12411000 12217000 9785000 0 0 0 11028000 11100000 10069000 0 0 0 7450700 7900600 5979200 0 0 0 9684700 7423800 7717300 0 0 0 904 37 877 17634;17635;17636;17637;17638;17639;17640;17641;17642;17643;17644;17645 10837;10838;10839 10837 3 AGSALTAEIGLMR Unmodified 1288.6809 0.68092105 1696 P64606 mlaE Probable phospholipid ABC transporter permease protein MlaE yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 39.821 37.519 2 0.00053777 14977 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 78.655 64.448 9332800 0 0 0 0 0 0 0 0 0 2837400 3529700 0 2965700 0 0 0 0 0 0 0 0 0 0 0 905 1696 878 17646;17647;17648 10840;10841 10841 2 AGSATRPFFGVQPALVDNEGNPLEGATEGSLVITDSWPGQAR Unmodified 4311.1196 0.11962781 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 54.026 52.62 3;4 9.5628E-35 26049 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.01 167.62 784630000 285720000 230620000 268280000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 906 1305 879 17649;17650;17651;17652;17653;17654 10842;10843;10844;10845;10846;10847 10842 6 AGSGALTLGQPNSPGVPADFAK Unmodified 2054.0433 0.043268383 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 38.465 36.853 2;3 5.8683E-63 17723 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 278.62 263.59 1842300000 124740000 101000000 101800000 4667100 5211800 5095700 148650000 139090000 146940000 29824000 26893000 30604000 132660000 121040000 116340000 13096000 7225700 7399900 184780000 182970000 173290000 14867000 12559000 11555000 907 1227 880 17655;17656;17657;17658;17659;17660;17661;17662;17663;17664;17665;17666;17667;17668;17669;17670;17671;17672;17673;17674;17675;17676;17677;17678;17679;17680;17681;17682;17683;17684;17685;17686;17687;17688;17689;17690;17691;17692;17693;17694;17695;17696;17697;17698;17699;17700;17701;17702 10848;10849;10850;10851;10852;10853;10854;10855;10856;10857;10858;10859;10860;10861;10862;10863;10864;10865;10866;10867;10868;10869;10870;10871;10872;10873;10874;10875;10876;10877;10878;10879;10880;10881;10882;10883 10871 36 AGSLIAVLILR Unmodified 1124.7281 0.72812924 176 P08191 fimH Protein FimH yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 53.631 52.233 2 8.2736E-07 21361 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 122.19 95.05 16563000 1291700 0 0 0 0 0 0 0 0 0 6429300 5712100 0 0 0 0 0 0 0 0 0 0 1693800 1436000 908 176 881 17703;17704;17705;17706;17707;17708 10884;10885;10886 10884 3 AGSLTSPLR Unmodified 900.50288 0.50288033 387 P0A812 ruvB Holliday junction ATP-dependent DNA helicase RuvB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.269 19.654 2 0.001069 7459 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.992 69.097 173530000 15383000 14932000 13024000 1122200 0 0 16534000 14594000 12879000 3071800 3068800 3642900 9817600 11073000 8644100 860990 0 0 15132000 15354000 14396000 0 0 0 909 387 882 17709;17710;17711;17712;17713;17714;17715;17716;17717;17718;17719;17720;17721;17722;17723;17724;17725 10887;10888 10887 1 AGTEVAAAHAGWR Unmodified 1295.6371 0.6370824 1430 P33644 yfiH Laccase domain protein YfiH yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.601 15.366 3 0.0031352 4764 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 65.179 55.985 213370000 24020000 19078000 20135000 0 0 0 18559000 18023000 19602000 0 0 0 14076000 12762000 9437800 0 0 0 21805000 18665000 17204000 0 0 0 910 1430 883 17726;17727;17728;17729;17730;17731;17732;17733;17734;17735;17736;17737 10889;10890;10891 10891 3 AGTGGDEAALFAGDLFR Unmodified 1666.7951 0.79509919 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.361 50.114 2 4.8824E-14 24459 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 170.18 146.8 347020000 39377000 38279000 40308000 0 0 0 25743000 21426000 25194000 0 0 0 26433000 21393000 21868000 0 0 0 29016000 28883000 29103000 0 0 0 911 345 884 17738;17739;17740;17741;17742;17743;17744;17745;17746;17747;17748;17749 10892;10893;10894;10895;10896;10897 10896 5 AGTHDSHGAPLGDAEIALTR Unmodified 1987.9712 0.97116607 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 2 1 1 3 3 3 3 3 3 24.423 23.452 2;3;4 2.1282E-81 10573 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 377.09 367.8 14151000000 733790000 694570000 710570000 4489000 3994200 4397000 1484900000 1413100000 1402900000 3211500 2185700 1172200 1228000000 1019600000 1241900000 0 0 0 1400300000 1462700000 1339300000 0 0 0 912 1299 885 17750;17751;17752;17753;17754;17755;17756;17757;17758;17759;17760;17761;17762;17763;17764;17765;17766;17767;17768;17769;17770;17771;17772;17773;17774;17775;17776;17777;17778;17779;17780;17781;17782;17783;17784;17785;17786;17787;17788;17789;17790;17791;17792;17793;17794;17795 10898;10899;10900;10901;10902;10903;10904;10905;10906;10907;10908;10909;10910;10911;10912;10913;10914;10915;10916;10917;10918;10919;10920;10921;10922;10923;10924;10925;10926;10927;10928;10929;10930;10931;10932;10933;10934 10901 33 AGTLTALSYPADDIK Unmodified 1534.7879 0.78788854 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.607 35.059 2 6.2946E-06 12308 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 100.93 98.199 48483000 8835600 9270200 6736600 7908400 8054200 7678100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 913 152 886 17796;17797;17798;17799;17800;17801 10935;10936;10937 10936 3 AGTPEKLDLNPIGTGPFQLQQYQK Unmodified 2642.3704 0.37041618 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 43.865 42.526 3 0.15907 20585 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 19.552 17.974 89622000 27069000 35526000 27027000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 914 1219 887 17802;17803;17804 10938 10938 1 AGTPFAPGANPMHGR Unmodified 1479.7041 0.70411611 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 19.829 20.332 3 0.00021249 7507 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 50.659 47.82 75645000 0 3312300 2435500 0 0 0 7873900 6324700 0 0 0 0 12950000 11234000 11929000 0 0 0 5463200 8289600 5833100 0 0 0 915 1559 888 17805;17806;17807;17808;17809;17810;17811;17812;17813;17814 10939;10940;10941;10942 10941 3 AGTPQITILGR Unmodified 1125.6506 0.6506072 381 P0A7Y8 rnpA Ribonuclease P protein component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 32.387 31.362 2 0.014114 14715 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.264 54.471 61867000 4884400 4877900 5782200 0 0 0 0 0 0 0 0 0 2771400 0 0 0 4804500 4587800 0 0 0 0 15088000 19071000 916 381 889 17815;17816;17817;17818;17819;17820;17821;17822 10943;10944;10945;10946 10945 0 AGVCYSMLDTINSR Unmodified 1585.7229 0.72286222 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.683 35.804 2 2.6914E-05 14462 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 90.653 84.413 123690000 12369000 9305600 9434800 622150 819780 804530 7679600 8719700 9816300 4127600 3139100 3913900 6457900 0 8662000 0 0 0 7713900 13042000 8992500 3214200 2151700 2705800 917 1197 890 17823;17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835;17836;17837;17838;17839;17840;17841;17842 10947;10948;10949;10950;10951;10952 10947 5 AGVDAPIDIGR Unmodified 1082.572 0.57202253 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.333 28.005 2 5.2824E-05 13171 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.86 89.895 651680000 0 0 0 0 0 0 163890000 145350000 136440000 0 0 0 48203000 52904000 47527000 0 0 0 18485000 19023000 19859000 0 0 0 918 1861 891 17843;17844;17845;17846;17847;17848;17849;17850;17851 10953;10954 10954 2 AGVDFEIVNNESDPR Unmodified 1660.7693 0.76927837 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.105 33.624 2 1.7632E-11 16143 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.87 160.63 828450000 117180000 90927000 101870000 0 1615800 1086500 78614000 77263000 62495000 0 0 0 41777000 41852000 38525000 0 0 0 63272000 57877000 54101000 0 0 0 919 1872 892 17852;17853;17854;17855;17856;17857;17858;17859;17860;17861;17862;17863;17864;17865 10955;10956;10957;10958;10959;10960;10961;10962;10963;10964;10965 10960 11 AGVDVLGISTDKPEK Unmodified 1527.8144 0.81443765 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 2 2 2 27.556 26.497 2;3 5.0342E-16 12459 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 202.3 170.76 6473600000 770860000 835270000 685430000 4963900 2457400 4118000 510620000 452730000 453520000 0 0 0 385800000 316290000 339270000 4982400 4659600 7785800 632320000 505450000 557080000 0 0 0 920 834 893 17866;17867;17868;17869;17870;17871;17872;17873;17874;17875;17876;17877;17878;17879;17880;17881;17882;17883;17884;17885;17886;17887;17888;17889;17890;17891;17892;17893;17894;17895;17896 10966;10967;10968;10969;10970;10971;10972;10973;10974;10975;10976;10977;10978;10979;10980;10981;10982;10983;10984;10985;10986;10987;10988 10969 23 AGVEVDDR Unmodified 859.40356 0.40356022 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 2 12.251 12.83 2 0.00012461 2835 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 157.21 139.36 17908000000 831030000 779980000 714350000 1537500000 1468500000 1668500000 0 964140000 873270000 206460000 206820000 182880000 602050000 551210000 586740000 68313000 45873000 50330000 1020200000 883280000 968370000 1220200000 1265700000 1212600000 921 542 894 17897;17898;17899;17900;17901;17902;17903;17904;17905;17906;17907;17908;17909;17910;17911;17912;17913;17914;17915;17916;17917;17918;17919;17920;17921;17922;17923;17924;17925 10989;10990;10991;10992;10993;10994;10995;10996;10997;10998;10999;11000;11001;11002;11003;11004 10995 16 AGVEVDDRGFIR Unmodified 1332.6786 0.67861287 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 5 1 1 3 3 3 2 2 1 4 3 4 25.565 24.404 2;3 1.2539E-06 8130 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 119.45 106.82 4533100000 8373200 0 0 921440000 1004000000 883530000 2648500 3695500 0 54044000 46189000 45664000 0 0 0 14110000 10120000 9109700 0 0 0 533980000 500390000 495850000 922 542 895 17926;17927;17928;17929;17930;17931;17932;17933;17934;17935;17936;17937;17938;17939;17940;17941;17942;17943;17944;17945;17946;17947;17948;17949;17950;17951;17952;17953;17954;17955;17956;17957;17958;17959;17960;17961;17962;17963;17964;17965 11005;11006;11007;11008;11009;11010;11011;11012;11013;11014;11015;11016;11017;11018;11019;11020;11021;11022;11023;11024;11025;11026;11027;11028;11029;11030;11031;11032;11033;11034;11035;11036;11037;11038;11039 11017 32 AGVEVDDRGFIRVDK Unmodified 1674.8689 0.86893283 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 26.482 25 4 0.00016972 8251 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 72.175 65.084 399100000 0 0 0 92456000 87063000 98540000 0 0 0 2788100 1763300 2598500 0 0 0 0 0 0 0 0 0 38538000 35265000 40086000 923 542 896 17966;17967;17968;17969;17970;17971;17972;17973;17974 11040;11041;11042;11043;11044;11045;11046;11047;11048 11043 9 AGVHFGHQTR Unmodified 1108.5526 0.55262449 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 10.714 11.304 2;3 1.6634E-06 2638 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 162.49 157.76 6703000000 957380000 878310000 699660000 52259000 36096000 38702000 258570000 200780000 231770000 113220000 101010000 100300000 333650000 341840000 251270000 137540000 58306000 75630000 595140000 492080000 543320000 65168000 62718000 78241000 924 373 897 17975;17976;17977;17978;17979;17980;17981;17982;17983;17984;17985;17986;17987;17988;17989;17990;17991;17992;17993;17994;17995;17996;17997;17998;17999;18000;18001;18002;18003;18004;18005;18006;18007;18008;18009;18010;18011;18012;18013;18014;18015;18016;18017;18018;18019;18020;18021;18022 11049;11050;11051;11052;11053;11054;11055;11056;11057;11058;11059;11060;11061;11062;11063;11064;11065;11066;11067;11068;11069;11070;11071;11072;11073;11074;11075;11076;11077;11078;11079;11080;11081;11082;11083;11084;11085;11086 11077 38 AGVLAEVR Unmodified 813.47085 0.47085192 1721 P68679 rpsU 30S ribosomal protein S21 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 3 2 1 1 2 2 3 2 2 1 1 2 3 2 1 1 1 1 18.905 19.271 1;2 0.00027829 5720 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 148.33 94.773 7417600000 878720000 939500000 739230000 22476000 18906000 18085000 392900000 407680000 308730000 7107100 90906000 82642000 507190000 441820000 370500000 21642000 16671000 19521000 736530000 721330000 574230000 34141000 30758000 36399000 925 1721 898 18023;18024;18025;18026;18027;18028;18029;18030;18031;18032;18033;18034;18035;18036;18037;18038;18039;18040;18041;18042;18043;18044;18045;18046;18047;18048;18049;18050;18051;18052;18053;18054;18055;18056;18057;18058;18059 11087;11088;11089;11090;11091;11092;11093;11094;11095;11096;11097;11098;11099;11100;11101;11102;11103;11104;11105;11106;11107;11108 11087 21 AGVMVLIAGGNVVR Unmodified 1354.7755 0.77549014 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 42.15 40.535 2;3 8.1652E-06 19740 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.5 96.549 462590000 152180000 153400000 150530000 1972300 1317400 1245300 0 0 0 0 0 0 0 0 0 0 0 0 1948800 0 0 0 0 0 926 1919 899 18060;18061;18062;18063;18064;18065;18066;18067;18068;18069 11109;11110;11111;11112;11113;11114;11115 11113 7 AGVMVVGDVMLDR Unmodified 1360.6843 0.68429187 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.189 41.417 2 0.013196 19380 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 61.353 52.624 77267000 11022000 9337400 9405400 1513300 1781500 1890800 0 0 0 4160700 5163900 3807900 0 15596000 0 0 0 0 0 0 13588000 0 0 0 927 1880 900 18070;18071;18072;18073;18074;18075;18076;18077;18078;18079;18080 11116;11117 11117 0 AGVNGLFTDFPDK Unmodified 1379.6721 0.67213051 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 42.732 41.464 2 2.1834E-05 19297 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 108.47 104.77 247210000 0 0 0 0 0 0 30320000 25930000 26167000 0 0 0 27154000 27343000 29164000 9247600 0 5966800 21056000 21523000 23340000 0 0 0 928 213 901 18081;18082;18083;18084;18085;18086;18087;18088;18089;18090;18091 11118;11119;11120;11121;11122;11123;11124;11125 11125 8 AGVNPDLVYQAIR Unmodified 1414.7569 0.75686319 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 40.071 38.46 2;3 1.4697E-05 18697 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.565 74.363 1678000000 235160000 207400000 193610000 625910 628200 762560 8532500 10825000 8750600 0 0 0 199000000 171180000 163820000 0 0 0 159420000 169250000 149080000 0 0 0 929 671 902 18092;18093;18094;18095;18096;18097;18098;18099;18100;18101;18102;18103;18104;18105;18106;18107;18108;18109;18110;18111;18112;18113;18114;18115 11126;11127;11128;11129;11130;11131;11132;11133;11134;11135 11130 6 AGVPAGVFNVVTGSAGAVGNELTSNPLVR Unmodified 2752.4508 0.45079177 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 1 1 1 1 1 2 2 1 1 54.424 52.955 3;4 1.4923E-31 25947 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 194.82 178.25 1257100000 270850000 266450000 257340000 0 0 0 92984000 84745000 62603000 2664600 5119300 0 24984000 23814000 37483000 0 0 0 49908000 43146000 34983000 0 0 0 930 1258 903 18116;18117;18118;18119;18120;18121;18122;18123;18124;18125;18126;18127;18128;18129;18130;18131;18132;18133;18134;18135;18136 11136;11137;11138;11139;11140;11141;11142 11141 7 AGVPCVPGSDGPLGDDMDK Unmodified 1885.8186 0.8186131 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.043 34.486 2 5.8742E-14 16774 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 147.52 144.18 620550000 44741000 40917000 30159000 0 0 0 46328000 45483000 41623000 0 0 0 56871000 60637000 54502000 0 0 0 64310000 67780000 67194000 0 0 0 931 1236 904 18137;18138;18139;18140;18141;18142;18143;18144;18145;18146;18147;18148 11143;11144;11145;11146;11147;11148;11149;11150;11151;11152;11153;11154 11144 12 AGVPCVPGSDGPLGDDMDKNR Unmodified 2155.9627 0.96265158 1236 P24182 accC Biotin carboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 30.094 28.743 2;3 1.6278E-10 13414 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.28 122.23 2537200000 156150000 156340000 118730000 3672900 3693100 3391200 169200000 176010000 195970000 5611900 3686300 4902000 192510000 225230000 207740000 2680600 2159000 2471100 281920000 313300000 297590000 5453800 3904500 4919500 932 1236 905 18149;18150;18151;18152;18153;18154;18155;18156;18157;18158;18159;18160;18161;18162;18163;18164;18165;18166;18167;18168;18169;18170;18171;18172;18173;18174;18175;18176;18177;18178;18179;18180;18181;18182;18183 11155;11156;11157;11158;11159;11160;11161;11162;11163;11164;11165;11166;11167;11168;11169;11170;11171;11172;11173;11174;11175 11168 21 AGVPGIPPNSTLVFDVELLDVKPAPK Unmodified 2672.4789 0.478904 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.885 52.445 2;3 1.2132E-10 25885 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.767 91.031 3238600000 229090000 187940000 179270000 0 0 0 406760000 339290000 293820000 0 0 0 265260000 215440000 214560000 0 0 0 334850000 281120000 291170000 0 0 0 933 1572 906 18184;18185;18186;18187;18188;18189;18190;18191;18192;18193;18194;18195;18196;18197;18198;18199;18200;18201;18202;18203;18204;18205;18206;18207 11176;11177;11178;11179;11180;11181;11182;11183;11184;11185;11186;11187;11188;11189 11178 14 AGVPVLIDPK Unmodified 1007.6015 0.60153174 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.568 31.069 2 0.066625 14559 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 43.979 38.197 387810000 28000000 29810000 25541000 0 0 0 35896000 30493000 30671000 2673500 0 1729400 30663000 29688000 30384000 0 0 0 34646000 39804000 37813000 0 0 0 934 1880 907 18208;18209;18210;18211;18212;18213;18214;18215;18216;18217;18218;18219;18220;18221 11190;11191;11192;11193 11191 4 AGVPVQDMEMWQFHPTGIAGAGVLVTEGCR Unmodified 3212.5205 0.52054437 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 2 1 1 2 1 52.185 50.958 3;4 1.76E-53 24784 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 229.04 226.59 2231400000 142390000 140030000 102170000 20429000 35621000 28126000 102150000 96073000 72408000 28545000 23360000 26229000 156570000 149510000 154650000 7186300 8261900 0 301260000 301330000 226400000 33457000 47070000 28130000 935 698 908 18222;18223;18224;18225;18226;18227;18228;18229;18230;18231;18232;18233;18234;18235;18236;18237;18238;18239;18240;18241;18242;18243;18244;18245;18246;18247;18248;18249;18250;18251;18252;18253;18254;18255;18256;18257 11194;11195;11196;11197;11198;11199;11200;11201;11202;11203;11204;11205;11206;11207;11208;11209;11210;11211;11212;11213;11214;11215;11216;11217;11218;11219;11220;11221;11222 11206 29 AGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNK Unmodified 4143.9969 0.9968756 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 51.061 49.914 4 1.0631E-17 18046 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 117.54 116.3 98129000 0 0 0 15582000 13057000 16969000 0 0 0 0 0 8823800 0 0 0 0 0 6819200 0 0 0 11636000 12863000 12379000 936 698 909 18258;18259;18260;18261;18262;18263;18264;18265 11223;11224;11225;11226;11227 11226 5 AGVSNLLDILSAVTGQSIPELEK Unmodified 2353.2741 0.27405618 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.853 54.38 3 2.7335E-10 27170 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.627 85.661 288200000 19446000 18688000 13346000 0 0 0 16339000 10306000 12826000 0 0 0 36439000 31727000 30215000 0 0 0 31302000 33345000 34220000 0 0 0 937 57 910 18266;18267;18268;18269;18270;18271;18272;18273;18274;18275;18276;18277 11228;11229;11230;11231;11232;11233;11234;11235;11236;11237 11233 10 AGVSYVDYHIQFHQR Unmodified 1818.8802 0.88016622 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 3 3 3 1 3 3 3 3 3 3 26.229 25.061 2;3;4 8.6901E-12 11653 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 173.71 167.74 1920100000 210530000 173280000 178820000 1455900 0 1680300 225740000 172020000 190550000 0 593840 0 106820000 114840000 105720000 0 0 0 148370000 142060000 147620000 0 0 0 938 1170 911 18278;18279;18280;18281;18282;18283;18284;18285;18286;18287;18288;18289;18290;18291;18292;18293;18294;18295;18296;18297;18298;18299;18300;18301;18302;18303;18304;18305;18306;18307;18308;18309;18310;18311;18312;18313;18314;18315;18316;18317;18318 11238;11239;11240;11241;11242;11243;11244;11245;11246;11247;11248;11249;11250;11251;11252;11253;11254;11255;11256;11257 11242 20 AGVTGAENR Unmodified 873.43044 0.43044367 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 10.266 10.993 2 0.094863 2405 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 50.04 25.042 566680000 178160000 189220000 152710000 0 0 0 10001000 20477000 16117000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 939 404 912 18319;18320;18321;18322;18323;18324 11258;11259;11260 11259 1 AGVTLDYPQPIVEHK Unmodified 1665.8726 0.87262123 50 P00914 phrB Deoxyribodipyrimidine photo-lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 30.01 29.098 3 0.07945 9347 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 32.252 30.181 36942000 0 9803900 9839300 0 0 0 0 0 3755300 0 0 0 3005000 3514600 1958900 0 2266300 2798800 0 0 0 0 0 0 940 50 913 18325;18326;18327;18328;18329;18330;18331;18332 11261;11262 11261 2 AGVWPLEDNPLVNAPHIQSELVAEWAHPYSR Unmodified 3494.7371 0.73713738 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.279 52.831 3;4 1.5532E-24 25114 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 168.69 163.83 3452800000 216620000 207160000 176540000 0 0 0 302690000 286750000 242490000 0 0 0 235460000 260440000 267810000 0 0 0 475630000 391830000 389410000 0 0 0 941 1409 914 18333;18334;18335;18336;18337;18338;18339;18340;18341;18342;18343;18344;18345;18346;18347;18348;18349;18350;18351;18352;18353;18354;18355;18356 11263;11264;11265;11266;11267;11268;11269;11270;11271;11272;11273;11274;11275;11276 11273 14 AGWCADYNEPTSFLNTMLSNSSMNTAHYK Unmodified 3309.4165 0.41653281 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 1 2 2 2 1 52.251 50.995 3;4 3.9097E-53 24662 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 226.4 225.8 9669800000 2895800000 2463700000 2570300000 7740200 10714000 8555700 179100000 199290000 195450000 0 0 0 149570000 149570000 181980000 0 0 0 230310000 227700000 199950000 0 0 0 942 1217 915 18357;18358;18359;18360;18361;18362;18363;18364;18365;18366;18367;18368;18369;18370;18371;18372;18373;18374;18375;18376;18377;18378;18379;18380;18381 11277;11278;11279;11280;11281;11282;11283;11284;11285;11286;11287;11288;11289;11290;11291;11292;11293 11281 17 AGWCADYNEPTSFLNTMLSNSSMNTAHYK Oxidation (M) 3325.4114 0.41144743 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 3 2 3 2 2 2 1 48.83 47.496 3 5.0131E-16 20602 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 135.8 135.8 315490000 112730000 72785000 105670000 0 0 0 0 9906600 0 0 0 0 4631100 0 0 0 0 0 6636200 0 3131800 0 0 0 943 1217 915 18382;18383;18384;18385;18386;18387;18388;18389;18390;18391;18392;18393;18394;18395;18396 11294;11295;11296;11297;11298;11299 11294 505;506 6 AGWCAVMR Unmodified 949.42623 0.42622669 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.327 24.284 2 0.045214 8533 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 60.788 56.389 169400000 16815000 16595000 18552000 0 1177400 0 0 0 0 0 3766500 4634200 14754000 16745000 14612000 0 0 0 0 23546000 22768000 5763000 5642900 4027600 944 1197 916 18397;18398;18399;18400;18401;18402;18403;18404;18405;18406;18407;18408;18409;18410 11300;11301;11302 11302 3 AGWFELSK Unmodified 936.47052 0.47051757 1855 P76402 yegP UPF0339 protein YegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.957 35.395 2 0.0012846 17549 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.14 69.014 1567800000 435170000 381420000 368110000 830630 528800 0 102620000 102320000 100910000 0 0 0 9067200 11247000 10892000 0 0 844470 14076000 16692000 13087000 0 0 0 945 1855 917 18411;18412;18413;18414;18415;18416;18417;18418;18419;18420;18421;18422;18423;18424;18425 11303;11304;11305;11306;11307;11308;11309;11310;11311;11312 11303 6 AGWLLAR Unmodified 785.45481 0.45480793 1101 P15038 helD Helicase IV yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.517 25.381 2 0.087593 11790 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 56.165 35.181 2452600000 0 0 357960000 24825000 23926000 26565000 137740000 116050000 125070000 33990000 28268000 34486000 155500000 135460000 137490000 34757000 28975000 27302000 297360000 300670000 301660000 38622000 41625000 44313000 946 1101 918 18426;18427;18428;18429;18430;18431;18432;18433;18434;18435;18436;18437;18438;18439;18440;18441;18442;18443;18444;18445;18446;18447 11313;11314;11315;11316;11317;11318;11319;11320;11321;11322;11323;11324 11319 12 AGWTLPAGK Unmodified 899.4865 0.48650199 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS 1 1 26.217 25.397 2 0.024783 10953 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 58.596 44.439 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 947 1424 919 18448;18449 11325;11326 11325 2 AGYAEDEVVAVSK Unmodified 1336.6511 0.65106071 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 2 1 1 3 3 4 2 2 1 4 3 3 1 1 1 3 2 3 1 1 1 23.694 22.918 2;3 9.8195E-09 10195 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 160.91 145.03 36991000000 1028100000 1006900000 1023000000 21089000 18202000 16602000 6775200000 6243800000 6429200000 199620000 145550000 153310000 2878300000 2634800000 2826200000 41346000 27592000 26933000 1838400000 1876600000 1720400000 19967000 21119000 18721000 948 1717 920 18450;18451;18452;18453;18454;18455;18456;18457;18458;18459;18460;18461;18462;18463;18464;18465;18466;18467;18468;18469;18470;18471;18472;18473;18474;18475;18476;18477;18478;18479;18480;18481;18482;18483;18484;18485;18486;18487;18488;18489;18490;18491;18492;18493;18494;18495;18496 11327;11328;11329;11330;11331;11332;11333;11334;11335;11336;11337;11338;11339;11340;11341;11342;11343;11344;11345;11346;11347;11348;11349;11350;11351;11352;11353;11354;11355;11356;11357;11358;11359;11360;11361;11362;11363;11364;11365;11366;11367;11368 11340 41 AGYDMWPGPYGSGGSR Unmodified 1656.6991 0.69909031 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.938 36.265 2 5.9176E-07 17897 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 109.39 109.39 266250000 60619000 55946000 52528000 0 0 0 21423000 17491000 17955000 0 0 0 6818800 6082600 5572900 0 0 0 8094500 5996800 7723400 0 0 0 949 1958 921 18497;18498;18499;18500;18501;18502;18503;18504;18505;18506;18507;18508 11369;11370;11371;11372;11373;11374;11375;11376 11370 8 AGYGAEAIEDDAK Unmodified 1308.5834 0.58337508 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.065 21.109 2 7.5923E-06 8575 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 123.79 116.15 65520000 4819900 3742900 0 0 0 0 13728000 9498900 11242000 5788200 4037600 4016000 0 2511100 0 0 0 0 0 3003300 3131800 0 0 0 950 1980 922 18509;18510;18511;18512;18513;18514;18515;18516;18517;18518;18519 11377;11378;11379;11380 11380 4 AGYLMMR Unmodified 840.39861 0.39861496 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 24.767 23.803 2 0.026221 10345 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.865 64.51 18668000 0 5084700 6489400 0 0 0 2484300 0 0 0 0 0 0 1944000 0 0 0 0 0 2666000 0 0 0 0 951 1878 923 18520;18521;18522;18523;18524 11381 11381 1 AGYNLVASATEGQMR Unmodified 1566.746 0.7460405 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 31.648 30.238 2 3.9049E-15 11367 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 192.5 178.26 424780000 17377000 16800000 15036000 4505200 3891100 4609200 26837000 28610000 27093000 13317000 11280000 12801000 23531000 24559000 26275000 3550800 2774300 2205400 47998000 39535000 37311000 11425000 11491000 11970000 952 844 924 18525;18526;18527;18528;18529;18530;18531;18532;18533;18534;18535;18536;18537;18538;18539;18540;18541;18542;18543;18544;18545;18546;18547;18548;18549;18550 11382;11383;11384;11385;11386;11387;11388;11389;11390;11391;11392;11393;11394;11395;11396;11397;11398;11399;11400 11388 19 AGYSLVVADRNPEAIADVIAAGAETASTAK Unmodified 2930.4985 0.49852982 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 51.449 50.197 3 4.3124E-23 24786 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 161.32 156.46 816360000 66714000 83509000 76488000 0 0 0 79406000 63752000 69823000 0 0 0 77115000 69483000 58583000 0 0 0 57455000 52038000 60845000 0 0 1153700 953 671 925 18551;18552;18553;18554;18555;18556;18557;18558;18559;18560;18561;18562;18563 11401;11402;11403;11404;11405;11406;11407;11408;11409;11410;11411 11402 11 AGYVPESVPLEHHMFGMMLGK Unmodified 2329.1058 0.10575076 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.663 40.97 3;4 4.3123E-05 20431 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.609 79.465 878180000 79702000 60667000 65894000 0 0 0 55715000 61194000 57434000 0 0 0 78682000 76111000 74504000 0 0 0 92531000 88922000 86824000 0 0 0 954 1073 926 18564;18565;18566;18567;18568;18569;18570;18571;18572;18573;18574;18575;18576;18577;18578;18579;18580;18581;18582;18583;18584;18585;18586;18587 11412;11413;11414;11415;11416;11417;11418;11419;11420;11421;11422;11423;11424;11425 11413 14 AHADGFDAFASPNLPPLLEAGIHIR Unmodified 2628.3449 0.34487013 492 P0A962 ansA L-asparaginase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 51.781 50.533 4 6.4872E-11 24921 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 131.56 130.28 499880000 28072000 41459000 33152000 0 946690 0 43166000 39296000 44924000 0 0 0 39314000 47966000 37305000 0 0 0 56191000 45404000 42687000 0 0 0 955 492 927 18588;18589;18590;18591;18592;18593;18594;18595;18596;18597;18598;18599;18600 11426;11427;11428;11429;11430;11431;11432;11433;11434;11435;11436;11437 11428 12 AHAFPWSEK Unmodified 1071.5138 0.51377937 487 P0A944 rimI Ribosomal-protein-alanine acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 19.955 20.456 2 0.0011824 7978 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 91.069 88.085 40465000 5448700 6593200 0 0 0 0 0 4814300 0 0 0 0 4699700 3308600 0 0 0 0 3719700 5981400 5899400 0 0 0 956 487 928 18601;18602;18603;18604;18605;18606;18607;18608;18609 11438;11439;11440;11441 11438 4 AHALFTR Unmodified 814.44497 0.44497152 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 2 1 2 2 2 2 1 1 2 2 2 2 1 1 2 2 2 13.158 13.627 1;2 0.0023826 3373 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 133.99 116.22 593550000 25629000 20796000 0 0 0 6499700 34186000 33209000 32006000 30861000 29918000 37893000 39684000 25193000 29092000 31923000 14642000 15263000 43845000 33303000 33709000 22678000 26894000 26331000 957 1057 929 18610;18611;18612;18613;18614;18615;18616;18617;18618;18619;18620;18621;18622;18623;18624;18625;18626;18627;18628;18629;18630;18631;18632;18633;18634;18635;18636;18637;18638;18639;18640;18641;18642;18643 11442;11443;11444;11445 11442 2 AHDVIVIAAPMYNFNISTQLK Unmodified 2344.2249 0.22493792 1551 P41407 azoR FMN-dependent NADH-azoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.221 48.815 3 2.5078E-10 24249 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 119.31 116.47 309480000 30557000 32803000 25468000 0 0 0 33970000 28929000 29516000 0 0 0 16951000 16862000 19614000 0 0 0 27221000 21708000 25879000 0 0 0 958 1551 930 18644;18645;18646;18647;18648;18649;18650;18651;18652;18653;18654;18655 11446;11447;11448;11449;11450;11451;11452;11453;11454;11455;11456;11457 11446 12 AHEFLHEMNR Unmodified 1282.5877 0.58768937 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 13.108 13.88 2;3 2.6815E-09 4144 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 197.66 193.36 4787600000 11574000 10504000 9798200 0 0 0 375930000 368820000 470450000 0 0 1780200 542440000 527450000 452900000 0 0 0 790660000 721180000 498300000 1458700 2186100 2190500 959 1324 931 18656;18657;18658;18659;18660;18661;18662;18663;18664;18665;18666;18667;18668;18669;18670;18671;18672;18673;18674;18675;18676;18677;18678;18679;18680;18681;18682;18683 11458;11459;11460;11461;11462;11463;11464;11465;11466;11467;11468;11469;11470;11471;11472;11473;11474;11475 11465 17 AHEFLHEMNR Oxidation (M) 1298.5826 0.58260399 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 11.149 12.035 3 0.017153 3122 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 55.314 55.314 198190000 0 0 0 0 0 0 45902000 24381000 0 0 0 0 23944000 14287000 16001000 0 0 0 27638000 17106000 28930000 0 0 0 960 1324 931 18684;18685;18686;18687;18688;18689;18690;18691 11476 11476 533 1 AHEFTFQQLR Unmodified 1275.636 0.63601977 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 2 1 1 1 2 2 1 1 2 2 2 25.075 23.865 2;3 0.00066492 7656 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 84.615 74.306 90600000 15379000 0 0 9661100 10427000 8881900 3699300 0 3284300 4369600 3591300 2860800 4193600 0 0 0 0 0 0 0 6506900 5454300 6234800 6056200 961 335 932 18692;18693;18694;18695;18696;18697;18698;18699;18700;18701;18702;18703;18704;18705;18706;18707;18708;18709;18710;18711;18712;18713 11477;11478;11479;11480 11480 4 AHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGK Unmodified 3347.4976 0.49756032 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 2 1 1 1 48.468 47.093 3;4 2.2981E-55 22871 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 234.74 234.23 2027300000 308160000 56751000 53888000 0 0 0 366280000 410590000 403990000 0 0 0 36085000 23440000 228680000 0 0 0 49516000 41201000 48656000 0 0 0 962 256 933 18714;18715;18716;18717;18718;18719;18720;18721;18722;18723;18724;18725;18726;18727;18728;18729;18730 11481;11482;11483;11484;11485;11486;11487;11488;11489;11490;11491;11492;11493;11494;11495;11496 11492 15 AHEIAGEEFNLSSTK Unmodified 1631.7791 0.77911477 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 2 1 2 1 2 1 1 2 2 2 23.051 22.434 2;3 5.858E-10 9976 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 196.7 184.2 555500000 35855000 56522000 46137000 0 0 0 50105000 10633000 58297000 0 0 0 32599000 37338000 25408000 9686500 4990200 8507800 56061000 66615000 56748000 0 0 0 963 37 934 18731;18732;18733;18734;18735;18736;18737;18738;18739;18740;18741;18742;18743;18744;18745;18746;18747;18748;18749;18750;18751;18752;18753;18754;18755 11497;11498;11499;11500;11501;11502;11503;11504;11505;11506;11507 11502 11 AHEILESR Unmodified 953.49304 0.49304393 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 11.765 12.504 2 0.00032995 3357 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.34 129.71 590300000 114370000 119050000 117900000 0 0 0 0 80886000 85605000 0 0 0 0 20815000 15614000 0 591120 0 20050000 0 15410000 0 0 0 964 1316 935 18756;18757;18758;18759;18760;18761;18762;18763;18764;18765 11508;11509;11510;11511 11511 4 AHEIQGCIALENSFNR Unmodified 1857.8792 0.87917994 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 28.255 27.25 3 1.2136E-06 12628 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 99.055 93.627 77010000 32919000 23633000 20458000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 965 1888 936 18766;18767;18768 11512;11513 11512 2 AHELGLKPR Unmodified 1019.5876 0.58761301 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 11.392 12.091 2 9.2897E-05 3156 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 148.04 136.53 120560000 45896000 35072000 39589000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 966 1168 937 18769;18770;18771 11514;11515;11516 11514 3 AHELGMVTVLWAYLR Unmodified 1757.9287 0.92869632 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 54.527 53.003 3 0.0002728 26214 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 69.716 66.055 40762000 0 4778500 3979600 0 0 0 10777000 9829600 11397000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 967 498 938 18772;18773;18774;18775;18776 11517;11518;11519 11519 0 AHELWLNKPHILQHYR Unmodified 2054.0962 0.096247427 80 P03018 uvrD DNA helicase II yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 3 20.01 20.002 4;5 1.6812E-06 5844 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 95.264 93.693 75429000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21240000 22450000 31739000 0 0 0 0 0 0 968 80 939 18777;18778;18779;18780;18781;18782;18783 11520;11521;11522;11523;11524 11524 5 AHFDAGEFVQSWDDDAAR Unmodified 2035.866 0.8660323 1738 P69739 hyaA Hydrogenase-1 small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 41.601 39.218 3 5.7303E-10 19585 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.52 125.52 75966000 0 0 0 0 0 0 20629000 17389000 21208000 8794200 7945900 0 0 0 0 0 0 0 0 0 0 0 0 0 969 1738 940 18784;18785;18786;18787;18788 11525;11526;11527;11528 11526 4 AHFGFNMPILYNAR Unmodified 1649.8137 0.81366656 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.95 41.393 3 0.018153 20545 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 40.224 38.906 175370000 23480000 19751000 19425000 0 0 0 13343000 11036000 14705000 0 0 0 14293000 6773800 8504600 0 0 0 17031000 12643000 14387000 0 0 0 970 1485 941 18789;18790;18791;18792;18793;18794;18795;18796;18797;18798;18799;18800 11529 11529 0 AHFSYSDSAEMLSGNSDLNEK Unmodified 2300.9856 0.98555509 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.876 29.375 3 7.0567E-28 13764 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.85 185.85 289050000 20320000 26054000 17027000 1051500 1613300 1490100 14812000 19601000 16686000 5003800 4727900 4718700 29225000 16945000 20367000 0 1345100 0 26816000 28039000 28131000 0 3054300 2019300 971 1197 942 18801;18802;18803;18804;18805;18806;18807;18808;18809;18810;18811;18812;18813;18814;18815;18816;18817;18818;18819;18820;18821 11530;11531;11532;11533;11534;11535;11536;11537;11538 11531 9 AHFVTIFAK Unmodified 1032.5757 0.57565135 538 P0A9M5 gpt Xanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.926 24.82 2 9.9432E-08 11128 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 183.74 172.92 821740000 68581000 62802000 66357000 0 0 0 65698000 67102000 57397000 0 0 0 65721000 63486000 63014000 0 0 0 78189000 80932000 82465000 0 0 0 972 538 943 18822;18823;18824;18825;18826;18827;18828;18829;18830;18831;18832;18833 11539;11540;11541;11542;11543;11544;11545;11546;11547;11548;11549;11550 11543 12 AHGGENIHIISK Unmodified 1274.6731 0.67313356 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 12.119 12.806 2;3 1.9318E-06 3331 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.23 133.87 10908000000 818780000 794020000 757820000 3564900 2309400 2365200 1264200000 1032300000 1198700000 6595300 4274800 5093800 890180000 770920000 716900000 0 1532000 0 871510000 838450000 921190000 2742700 2189400 1974900 973 771 944 18834;18835;18836;18837;18838;18839;18840;18841;18842;18843;18844;18845;18846;18847;18848;18849;18850;18851;18852;18853;18854;18855;18856;18857;18858;18859;18860;18861;18862;18863;18864;18865;18866;18867;18868;18869;18870 11551;11552;11553;11554;11555;11556;11557;11558;11559;11560;11561;11562;11563;11564;11565;11566;11567;11568;11569;11570;11571;11572;11573 11573 23 AHGIAVPENTR Unmodified 1163.6047 0.60471964 527 P0A9J4 panE 2-dehydropantoate 2-reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 12.493 13.193 2 0.00022226 3876 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.65 90.425 27473000 0 13885000 0 0 0 0 13588000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 974 527 945 18871;18872;18873;18874;18875;18876 11574;11575;11576;11577;11578 11577 5 AHGRPVR Unmodified 791.45145 0.45145388 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 6.1122 6.8448 2 0.0016291 1156 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.72 132.57 63058000 20854000 20137000 22067000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 975 225 946 18877;18878;18879 11579;11580;11581 11580 3 AHGTIAEVVNHFK Unmodified 1421.7415 0.74154747 1285 P26647 plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 22.237 22 3 0.014241 8940 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 37.236 29.512 34817000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 923890 831000 557640 16917000 15587000 0 0 0 0 976 1285 947 18880;18881;18882;18883;18884;18885 11582;11583 11583 1 AHHLDAHYITR Unmodified 1332.6687 0.66871688 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 2 1 1 2 2 1 1 2 1 2 2 1 11.743 12.578 2;3 2.7827E-07 3482 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.36 152.72 457550000 154570000 131740000 41210000 0 0 776050 11652000 14496000 12406000 0 0 0 7535400 20373000 5891800 0 0 0 23340000 25048000 8512800 0 0 0 977 529 948 18886;18887;18888;18889;18890;18891;18892;18893;18894;18895;18896;18897;18898;18899;18900;18901;18902;18903;18904;18905 11584;11585;11586;11587;11588;11589;11590;11591 11585 8 AHHMDANLPQDFQILDSEDQLR Unmodified 2592.2027 0.20269893 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 2 1 1 2 1 2 39.478 38.166 3;4 5.1445E-16 13943 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 155.16 152.24 196090000 9849600 0 12755000 0 0 0 0 0 0 1203800 1510800 2283000 0 9108800 0 40398000 37818000 44010000 12728000 10040000 0 4396100 4670600 5319000 978 80 949 18906;18907;18908;18909;18910;18911;18912;18913;18914;18915;18916;18917;18918;18919;18920;18921;18922;18923;18924 11592;11593;11594;11595 11592 4 AHHVGEWASLR Unmodified 1261.6316 0.63160309 622 P0AB14 yccJ Uncharacterized protein YccJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 14.607 15.386 2;3 3.1944E-06 5185 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.52 96.988 4967200000 797020000 361850000 282400000 0 0 738950 920040000 957340000 883610000 0 0 0 160880000 117340000 136290000 0 0 0 118030000 107040000 124660000 0 0 0 979 622 950 18925;18926;18927;18928;18929;18930;18931;18932;18933;18934;18935;18936;18937;18938;18939;18940;18941;18942;18943;18944;18945;18946;18947;18948;18949 11596;11597;11598;11599;11600;11601;11602;11603;11604;11605;11606;11607;11608;11609;11610;11611;11612;11613;11614;11615;11616;11617 11609 22 AHHYPSELSGGQQQR Unmodified 1693.7921 0.7920795 1053 P10346 glnQ Glutamine transport ATP-binding protein GlnQ yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.286 12.067 3 3.3892E-07 2333 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 123.28 119.03 143200000 16103000 10841000 9948700 13564000 9973300 8939000 7451800 8040000 0 4869000 0 0 8517300 8573200 10183000 0 5533100 0 8030700 5408800 7220700 0 0 0 980 1053 951 18950;18951;18952;18953;18954;18955;18956;18957;18958;18959;18960;18961;18962;18963;18964;18965 11618;11619 11618 2 AHIEEMK Unmodified 856.41129 0.41128813 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.664 11.479 2 0.018715 2722 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.006 87.62 357990000 29101000 32922000 26587000 0 0 0 26231000 23616000 23187000 0 0 0 35912000 32743000 27074000 0 0 0 31927000 34782000 33902000 0 0 0 981 1956 952 18966;18967;18968;18969;18970;18971;18972;18973;18974;18975;18976;18977 11620;11621 11620 0 AHIEEMKK Unmodified 984.50625 0.50625115 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 8.4024 9.1377 2 0.010957 1783 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 81.191 76.456 27543000 258130 4973500 5705000 0 0 0 0 0 0 0 0 0 5846500 6733600 3321100 0 0 485310 219860 0 0 0 0 0 982 1956 953 18978;18979;18980;18981;18982;18983;18984;18985 11622;11623;11624;11625 11624 4 AHIVATNPPFGSAAGTNITR Unmodified 1994.0334 0.033372399 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.434 25.528 3 2.3739E-10 11637 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 122.44 120.09 472400000 21683000 23105000 23746000 0 0 0 42871000 39441000 39409000 0 0 0 35592000 36920000 39155000 1303700 718640 1059700 58802000 55088000 53503000 0 0 0 983 194 954 18986;18987;18988;18989;18990;18991;18992;18993;18994;18995;18996;18997;18998;18999;19000 11626;11627;11628;11629;11630;11631;11632;11633 11630 7 AHIVELVR Unmodified 935.55525 0.55525025 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.76 17.518 2 0.00065993 6260 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.57 28.647 397630000 37842000 48214000 34306000 0 0 0 33417000 33766000 39843000 0 0 0 24281000 25964000 20914000 0 0 0 32478000 36544000 30060000 0 0 0 984 328 955 19001;19002;19003;19004;19005;19006;19007;19008;19009;19010;19011;19012 11634;11635;11636;11637;11638;11639;11640;11641;11642 11638 9 AHLAPFVPGHSVVQIEGMLTR Unmodified 2258.1994 0.19939187 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 2 1 2 3 3 3 1 1 3 3 3 2 1 1 41.978 40.231 2;3;4 7.7511E-35 20037 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 214.19 212.89 4987700000 350970000 329420000 282330000 22310000 22079000 21855000 443560000 480530000 431660000 28127000 18867000 32632000 390700000 272110000 317880000 5534100 0 4064100 486690000 521520000 484100000 23426000 8659800 8666900 985 1409 956 19013;19014;19015;19016;19017;19018;19019;19020;19021;19022;19023;19024;19025;19026;19027;19028;19029;19030;19031;19032;19033;19034;19035;19036;19037;19038;19039;19040;19041;19042;19043;19044;19045;19046;19047;19048;19049;19050;19051;19052;19053;19054;19055;19056;19057;19058;19059;19060;19061;19062;19063;19064;19065 11643;11644;11645;11646;11647;11648;11649;11650;11651;11652;11653;11654;11655;11656;11657;11658;11659;11660;11661;11662;11663;11664;11665;11666;11667;11668;11669;11670;11671;11672;11673;11674;11675;11676;11677;11678;11679;11680;11681;11682;11683;11684;11685;11686;11687 11649 43 AHLKPWQSVGTR Unmodified 1378.747 0.7469672 1099 P15028 fecB Fe(3+) dicitrate-binding periplasmic protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 13.443 14.31 3 0.00032058 4379 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.92 73.099 142230000 9826000 14226000 10706000 0 0 0 10582000 10639000 7790400 0 0 0 5619300 7302100 7735500 0 0 0 0 24769000 33038000 0 0 0 986 1099 957 19066;19067;19068;19069;19070;19071;19072;19073;19074;19075;19076 11688 11688 1 AHLLKPYLTSR Unmodified 1297.7507 0.7506556 611 P0AAT4 ybdG Miniconductance mechanosensitive channel YbdG yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.559 16.257 3 0.049023 5668 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 32.159 26.126 53166000 0 2823800 0 833840 638850 758380 5725200 0 6742400 1955400 1835500 1837300 6712100 3805600 4429100 0 0 0 5177700 5634800 4256600 0 0 0 987 611 958 19077;19078;19079;19080;19081;19082;19083;19084;19085;19086;19087;19088;19089;19090;19091 11689;11690 11689 0 AHLLPLGIEQLPALK Unmodified 1611.9712 0.97121306 1848 P76291 cmoB tRNA (mo5U34)-methyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.224 44.734 3 8.5029E-07 20753 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 111.12 110.93 214350000 13859000 17656000 15293000 0 0 0 21485000 15259000 17923000 0 0 0 15331000 14492000 16653000 0 0 0 21734000 24571000 20096000 0 0 0 988 1848 959 19092;19093;19094;19095;19096;19097;19098;19099;19100;19101;19102;19103 11691;11692;11693;11694;11695;11696;11697;11698;11699;11700;11701 11701 9 AHLNTLMAEMAALK Unmodified 1512.7793 0.77925489 1370 P31475 yieP Uncharacterized HTH-type transcriptional regulator YieP yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.151 38.486 3 4.3471E-07 18559 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.37 105.01 279120000 24410000 19922000 21719000 0 0 0 25147000 24016000 26020000 0 0 0 21852000 20551000 19820000 0 0 0 27270000 23828000 24569000 0 0 0 989 1370 960 19104;19105;19106;19107;19108;19109;19110;19111;19112;19113;19114;19115 11702;11703;11704;11705;11706;11707;11708 11705 7 AHLQHMDGVMVGR Unmodified 1449.6969 0.69692224 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 1 1 2 1 2 2 2 2 1 1 15.022 15.82 2;3 8.8943E-06 5445 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.6 101.84 183760000 25233000 14827000 18990000 0 0 0 10656000 10044000 8449200 0 0 0 20276000 17190000 14709000 0 0 0 19704000 9748300 13934000 0 0 0 990 1399 961 19116;19117;19118;19119;19120;19121;19122;19123;19124;19125;19126;19127;19128;19129;19130;19131;19132;19133;19134 11709;11710 11710 1 AHLTCLHTR Unmodified 1107.5607 0.56074634 165 P07648 recC RecBCD enzyme subunit RecC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 10.769 11.641 3 0.15621 2864 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 26.786 24.514 24120000 0 0 0 0 0 0 0 4664700 0 0 0 0 0 2076700 3171900 0 0 0 4884700 4582800 4738800 0 0 0 991 165 962 19135;19136;19137;19138;19139;19140 11711 11711 0 AHPADVLPQEMDK Unmodified 1449.6922 0.69221402 1303 P27431 roxA 50S ribosomal protein L16 arginine hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.253 20.643 2 1.2651E-05 8226 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 115.29 108.68 189650000 22174000 27059000 16042000 0 0 0 15103000 11354000 13902000 0 0 0 12213000 13345000 12495000 0 0 0 16368000 15178000 14411000 0 0 0 992 1303 963 19141;19142;19143;19144;19145;19146;19147;19148;19149;19150;19151;19152 11712;11713;11714;11715;11716;11717;11718;11719;11720;11721 11713 10 AHPDVELYTASIDQGLNEHGYIIPGLGDAGDK Unmodified 3364.6212 0.62116415 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 2 2 2 2 3 2 2 3 3 48.865 47.543 3;4 1.0867E-33 23022 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 196.06 194.18 9350200000 990580000 971680000 928200000 3219800 4713500 0 423900000 442610000 440770000 0 0 0 771770000 681100000 764420000 0 0 0 1029600000 963640000 933970000 0 0 0 993 424 964 19153;19154;19155;19156;19157;19158;19159;19160;19161;19162;19163;19164;19165;19166;19167;19168;19169;19170;19171;19172;19173;19174;19175;19176;19177;19178;19179;19180;19181;19182;19183 11722;11723;11724;11725;11726;11727;11728;11729;11730;11731;11732;11733;11734;11735;11736;11737;11738;11739;11740;11741;11742;11743;11744;11745;11746;11747;11748 11730 25 AHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK Unmodified 3910.9377 0.93774726 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 2 2 2 2 2 1 1 1 1 1 2 1 1 50.481 49.419 4;5 2.8882E-12 19741 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 90.843 89.366 236860000 0 0 0 11822000 21612000 22801000 0 0 0 39538000 39436000 30885000 7589000 10077000 7823400 4109400 5057800 17970000 0 11668000 0 0 6470000 0 994 424 965 19184;19185;19186;19187;19188;19189;19190;19191;19192;19193;19194;19195;19196;19197;19198;19199;19200;19201;19202;19203 11749;11750;11751;11752;11753;11754;11755;11756;11757;11758 11752 10 AHPDVFNILLQVLDDGR Unmodified 1921.0058 0.005760665 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 2 2 1 2 2 2 2 2 2 2 1 55.595 54.123 2;3 1.2027E-19 26935 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 223.72 215.99 1966600000 213950000 210860000 204350000 0 0 0 269630000 45193000 238920000 11200000 11479000 15886000 141600000 134380000 103960000 0 0 0 124900000 115520000 122520000 2231400 0 0 995 1662 966 19204;19205;19206;19207;19208;19209;19210;19211;19212;19213;19214;19215;19216;19217;19218;19219;19220;19221;19222;19223;19224;19225;19226;19227;19228;19229;19230;19231;19232 11759;11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775 11761 17 AHPLSLGMLGMHGVR Unmodified 1574.8174 0.81737173 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.049 27.813 4 7.636E-06 12783 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 62.528 54.747 70732000 20465000 16436000 13923000 0 0 0 0 3532300 2760800 0 0 0 3707600 2783900 0 0 0 0 3146200 3977300 0 0 0 0 996 173 967 19233;19234;19235;19236;19237;19238;19239;19240;19241 11776;11777;11778 11777 3 AHPQLAEEFTR Unmodified 1297.6415 0.64149908 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 2 18.799 19.277 2;3 6.9848E-11 7432 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 199.46 164.23 2153100000 375800000 364590000 345030000 0 0 0 236720000 263080000 232670000 1229200 0 1093000 48792000 41521000 42484000 0 0 0 68584000 68984000 62507000 0 0 0 997 1423 968 19242;19243;19244;19245;19246;19247;19248;19249;19250;19251;19252;19253;19254;19255;19256;19257;19258;19259;19260;19261;19262;19263;19264;19265;19266;19267;19268 11779;11780;11781;11782;11783;11784;11785;11786;11787;11788;11789;11790;11791;11792;11793;11794;11795;11796;11797;11798;11799;11800;11801 11784 22 AHPSLTLHQDPVYVTR Unmodified 1832.9533 0.95333116 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 1 1 3 3 3 3 3 3 21.456 21.674 2;3;4 8.439E-31 8802 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 255.54 246.58 6109700000 198790000 218960000 163880000 471400 583850 635300 985110000 843460000 825860000 1351600 988470 0 428560000 450720000 618580000 0 0 0 452600000 467920000 451220000 0 0 0 998 1806 969 19269;19270;19271;19272;19273;19274;19275;19276;19277;19278;19279;19280;19281;19282;19283;19284;19285;19286;19287;19288;19289;19290;19291;19292;19293;19294;19295;19296;19297;19298;19299;19300;19301;19302;19303;19304;19305;19306;19307;19308;19309 11802;11803;11804;11805;11806;11807;11808;11809;11810;11811;11812;11813;11814;11815;11816;11817;11818;11819;11820;11821;11822;11823;11824;11825;11826;11827;11828;11829;11830;11831;11832;11833;11834;11835;11836 11812 35 AHQIENNPR Unmodified 1077.5316 0.5315547 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 2 5.7894 6.6433 2;3 0.00041389 1364 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 124.08 122.58 55935000 7153700 4344500 6626400 0 0 0 5103300 0 0 0 0 0 3416500 3756500 7066600 0 0 0 5115900 8106000 5245600 0 0 0 999 944 970 19310;19311;19312;19313;19314;19315;19316;19317;19318;19319;19320;19321;19322 11837;11838;11839;11840;11841;11842;11843;11844;11845 11837 8 AHQQQFDGWVNEALAAQK Unmodified 2039.9813 0.98133683 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 1 36.456 34.942 2;3 5.3932E-127 16664 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 390.56 387.88 4882000000 547790000 494030000 504600000 0 0 0 99321000 104220000 99011000 0 0 0 340150000 354960000 335780000 0 0 0 682700000 669930000 648060000 0 0 1407100 1000 954 971 19323;19324;19325;19326;19327;19328;19329;19330;19331;19332;19333;19334;19335;19336;19337;19338;19339;19340;19341;19342;19343;19344 11846;11847;11848;11849;11850;11851;11852;11853;11854;11855;11856;11857;11858;11859;11860;11861;11862;11863;11864;11865;11866 11859 21 AHRPIIDELQER Unmodified 1475.7845 0.78447492 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 18.025 18.559 2;3 2.5357E-11 6860 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 167.11 141.68 969970000 68019000 96630000 91907000 2134700 1922500 2059100 82203000 63858000 68384000 3885500 2592900 0 76342000 75094000 82071000 0 0 0 87219000 88314000 77332000 0 0 0 1001 1172 972 19345;19346;19347;19348;19349;19350;19351;19352;19353;19354;19355;19356;19357;19358;19359;19360;19361;19362;19363;19364;19365;19366;19367;19368;19369;19370;19371;19372;19373 11867;11868;11869;11870;11871;11872;11873;11874;11875;11876;11877;11878;11879;11880;11881;11882;11883;11884;11885;11886;11887;11888;11889;11890 11884 24 AHSLGVAGIAK Unmodified 1022.5873 0.58727866 1289 P27128 rfaI Lipopolysaccharide 1,3-galactosyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.606 15.261 2 0.021647 5046 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 60.118 54.459 26093000 0 0 0 303280 407550 280920 0 5220300 0 2332300 1345600 2440800 2052600 0 3187900 0 0 0 0 4615600 3906500 0 0 0 1002 1289 973 19374;19375;19376;19377;19378;19379;19380;19381;19382;19383;19384 11891 11891 0 AHVGDEEHR Unmodified 1048.4686 0.46862009 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.004 7.5791 2;3 0.00018601 1727 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 109.71 106.86 76797000 0 0 0 446680 705100 714230 8003900 8641800 6753200 4536000 3779100 3409400 0 5827700 5724300 462560 683180 796090 6900200 7363900 8287300 1191000 1178400 1392700 1003 717 974 19385;19386;19387;19388;19389;19390;19391;19392;19393;19394;19395;19396;19397;19398;19399;19400;19401;19402;19403;19404 11892;11893;11894;11895;11896;11897;11898 11892 5 AHVGDFIFTSK Unmodified 1220.619 0.61897272 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 3 4 5 6 2 2 2 1 1 1 2 2 2 2 2 2 29.274 27.756 2;3 1.5688E-05 12793 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.02 133.9 15087000000 128540000 113520000 89210000 1924000 0 717820 114360000 110530000 103580000 4897200000 4548500000 4404700000 64612000 63158000 61688000 2213400 3763400 1759000 99360000 93976000 98884000 27225000 25757000 31756000 1004 497 975 19405;19406;19407;19408;19409;19410;19411;19412;19413;19414;19415;19416;19417;19418;19419;19420;19421;19422;19423;19424;19425;19426;19427;19428;19429;19430;19431;19432;19433;19434;19435;19436;19437;19438;19439;19440;19441;19442;19443;19444;19445;19446;19447;19448;19449;19450;19451;19452;19453;19454;19455;19456 11899;11900;11901;11902;11903;11904;11905;11906;11907;11908;11909;11910;11911;11912;11913;11914;11915;11916;11917;11918;11919;11920;11921;11922;11923;11924;11925;11926;11927;11928 11924 28 AHVIAGAGHWVHAEKPDAVLR Unmodified 2233.1869 0.18685335 1766 P75736 ybfF Esterase YbfF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 3 3 3 1 3 2 3 2 1 3 3 2 2 19.617 20.097 3;4;5 8.3415E-07 7711 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.958 94.804 558130000 80943000 69603000 73202000 0 0 834990 50063000 41817000 47172000 0 0 0 21117000 20451000 32202000 0 0 0 48104000 30730000 41892000 0 0 0 1005 1766 976 19457;19458;19459;19460;19461;19462;19463;19464;19465;19466;19467;19468;19469;19470;19471;19472;19473;19474;19475;19476;19477;19478;19479;19480;19481;19482;19483;19484;19485;19486;19487 11929;11930;11931;11932;11933;11934;11935;11936 11932 8 AHVKGESTEALLPNMVATSLAK Unmodified 2266.1991 0.1991171 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 34.478 32.54 4 0.063223 12609 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 34.685 31.676 37293000 0 0 0 3001600 3581000 3631200 0 0 0 7645000 0 6357100 0 0 0 0 0 0 0 0 0 4373000 4513500 4190300 1006 62 977 19488;19489;19490;19491;19492;19493;19494;19495 11937;11938;11939 11937 3 AHVTAETPK Unmodified 952.49779 0.49779495 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 2 1 1 1 8.7876 9.6552 2 0.0010908 2247 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.429 86.666 3767800000 1345700000 1250900000 1076100000 7054500 11566000 9306800 0 4902300 4620100 0 0 0 0 30344000 27320000 0 0 0 0 0 0 0 0 0 1007 921 978 19496;19497;19498;19499;19500;19501;19502;19503;19504;19505;19506 11940;11941;11942;11943;11944;11945;11946;11947;11948 11943 8 AHWSFTPGTR Unmodified 1158.557 0.55704117 1286 P26648 ftsP Cell division protein FtsP yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.352 20.758 3 0.035404 8248 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 35.908 33.496 77437000 7256000 5456800 4700100 0 0 0 5923200 4846100 4334400 0 0 0 5316600 4524600 3389900 0 0 0 10700000 10051000 10938000 0 0 0 1008 1286 979 19507;19508;19509;19510;19511;19512;19513;19514;19515;19516;19517;19518 11949;11950;11951 11950 0 AHYDDEVAYITER Unmodified 1580.7107 0.71070086 1544 P39830 ybaL Inner membrane protein YbaL yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 2 2 2 1 1 2 2 2 2 1 1 2 2 2 1 26.823 25.597 2;3 3.0458E-05 11598 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 122.7 120.55 156560000 5306400 4507600 0 0 0 0 17201000 18457000 19905000 5182500 2466200 5226800 12304000 7665600 10085000 0 1532500 761020 15259000 14230000 14110000 2363200 0 0 1009 1544 980 19519;19520;19521;19522;19523;19524;19525;19526;19527;19528;19529;19530;19531;19532;19533;19534;19535;19536;19537;19538;19539;19540;19541;19542;19543;19544;19545 11952;11953 11953 2 AHYDGVLGINIGK Unmodified 1355.7197 0.7197494 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 31.483 30.117 3 0.0030938 14208 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 62.528 59.578 68190000 13753000 0 0 2615200 1755400 1734200 6631400 0 0 0 0 0 6374200 5474300 6044100 0 0 0 9668600 7349900 6789200 0 0 0 1010 335 981 19546;19547;19548;19549;19550;19551;19552;19553;19554;19555;19556 11954;11955;11956;11957 11956 4 AHYVDIIFGPQTLHR Unmodified 1765.9264 0.92638813 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 3 2 2 2 2 2 3 2 1 2 3 2 3 1 1 1 3 3 3 1 2 1 34.686 33.157 2;3;4 2.8004E-09 15741 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.74 148.87 1410000000 100370000 93732000 98983000 13278000 11494000 13517000 93343000 89099000 91519000 18583000 8277200 17355000 77771000 83934000 72203000 9466400 4662600 4692000 153210000 163620000 149530000 9151700 21001000 11176000 1011 862 982 19557;19558;19559;19560;19561;19562;19563;19564;19565;19566;19567;19568;19569;19570;19571;19572;19573;19574;19575;19576;19577;19578;19579;19580;19581;19582;19583;19584;19585;19586;19587;19588;19589;19590;19591;19592;19593;19594;19595;19596;19597;19598;19599;19600;19601;19602;19603;19604;19605;19606 11958;11959;11960;11961;11962;11963;11964;11965;11966;11967;11968;11969;11970;11971;11972;11973;11974;11975;11976;11977;11978;11979;11980;11981;11982;11983;11984;11985;11986;11987;11988;11989;11990;11991 11982 32 AHYVLMNVEAPQEVIDELETTFR Unmodified 2703.3214 0.32141708 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 1 1 2 1 2 1 3 3 2 3 3 4 1 1 1 2 3 3 1 1 2 55.038 53.679 2;3;4 1.8874E-75 26326 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 302.15 297.61 4877400000 742790000 701510000 671130000 35621000 33235000 39757000 17777000 142460000 116350000 89606000 92058000 76663000 269790000 249160000 235390000 32233000 43680000 42850000 375460000 364500000 381140000 41440000 38662000 44096000 1012 66 983 19607;19608;19609;19610;19611;19612;19613;19614;19615;19616;19617;19618;19619;19620;19621;19622;19623;19624;19625;19626;19627;19628;19629;19630;19631;19632;19633;19634;19635;19636;19637;19638;19639;19640;19641;19642;19643;19644;19645;19646;19647;19648;19649;19650;19651;19652;19653;19654;19655;19656;19657;19658;19659 11992;11993;11994;11995;11996;11997;11998;11999;12000;12001;12002;12003;12004;12005;12006;12007;12008;12009;12010;12011;12012;12013;12014;12015;12016;12017;12018 12014 24 AIAAGASAVMVGSMLAGTEESPGEIELYQGR Unmodified 3064.4845 0.48453602 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.086 52.629 3 0.027515 25750 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 47.919 42.016 190980000 17520000 15321000 15129000 0 0 0 22991000 20893000 17997000 0 0 0 0 0 22061000 0 0 0 19388000 19474000 20203000 0 0 0 1013 788 984 19660;19661;19662;19663;19664;19665;19666;19667;19668;19669 12019;12020 12020 0 AIAAIPEMHELNIGHAIIGR Unmodified 2125.1466 0.14662802 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.968 39.188 4 4.4628E-07 19014 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 100.35 97.344 1658100000 181030000 181420000 152250000 2604100 3646900 2925300 2287600 0 165110000 8619400 0 0 135180000 147360000 158900000 0 0 0 168790000 173310000 160850000 4466100 4618300 4728900 1014 319 985 19670;19671;19672;19673;19674;19675;19676;19677;19678;19679;19680;19681;19682;19683;19684;19685;19686;19687 12021;12022;12023 12022 3 AIAALDCNDR Unmodified 1117.5186 0.51860675 1351 P30863 dkgB 2,5-diketo-D-gluconic acid reductase B yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 18.05 18.63 2 0.0045383 7163 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 66.621 61.063 110400000 23474000 0 0 0 0 0 11400000 12844000 11360000 0 0 0 8030800 7990300 0 0 0 0 12834000 10921000 11542000 0 0 0 1015 1351 986 19688;19689;19690;19691;19692;19693;19694;19695;19696 12024 12024 1 AIAALQVLPDTPWR Unmodified 1549.8617 0.86166261 769 P0AD57 ispB Octaprenyl-diphosphate synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 2 2 2 2 2 2 50.846 49.521 2;3 1.5572E-19 24553 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 248.73 246.79 1100400000 6376600 5824900 82162000 0 0 0 80544000 92932000 77922000 0 0 717720 110430000 97123000 97122000 0 0 0 156820000 141490000 150910000 0 0 0 1016 769 987 19697;19698;19699;19700;19701;19702;19703;19704;19705;19706;19707;19708;19709;19710;19711;19712;19713;19714;19715;19716;19717;19718;19719 12025;12026;12027;12028;12029;12030;12031;12032;12033;12034;12035;12036;12037;12038;12039;12040;12041;12042 12025 18 AIAAVFHK Unmodified 855.49667 0.49667274 1180 P21369 pncA Pyrazinamidase/nicotinamidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.337 16.144 2 0.014713 5538 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 71.378 66.147 175620000 12631000 14200000 12014000 0 0 0 17540000 15978000 13937000 0 0 0 14144000 14784000 15817000 0 0 0 13734000 13314000 17527000 0 0 0 1017 1180 988 19720;19721;19722;19723;19724;19725;19726;19727;19728;19729;19730;19731 12043 12043 1 AIAEATEAGLLGK Unmodified 1242.682 0.68196691 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.102 28.673 2 9.3525E-07 10798 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 136.63 106.86 1207600000 57223000 54855000 55381000 28120000 24858000 26619000 72061000 76588000 78311000 34309000 34745000 31198000 63199000 68695000 64460000 0 6172900 7313100 123240000 106050000 108160000 28506000 25843000 31666000 1018 1383 989 19732;19733;19734;19735;19736;19737;19738;19739;19740;19741;19742;19743;19744;19745;19746;19747;19748;19749;19750;19751;19752;19753;19754 12044;12045;12046;12047;12048;12049;12050;12051;12052;12053;12054;12055;12056;12057;12058;12059;12060;12061;12062;12063;12064;12065 12047 22 AIAEHTDLPQILYNVPSR Unmodified 2036.0691 0.069089203 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 4 3 2 4 3 3 39.437 37.778 2;3;4 5.7972E-45 18878 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 301.83 275.72 3147100000 253350000 235110000 210470000 0 0 0 289970000 272260000 279170000 0 0 0 276910000 209090000 193290000 0 0 0 330860000 309030000 287590000 0 0 0 1019 258 990 19755;19756;19757;19758;19759;19760;19761;19762;19763;19764;19765;19766;19767;19768;19769;19770;19771;19772;19773;19774;19775;19776;19777;19778;19779;19780;19781;19782;19783;19784;19785;19786;19787;19788;19789;19790;19791 12066;12067;12068;12069;12070;12071;12072;12073;12074;12075;12076;12077;12078;12079;12080;12081;12082;12083;12084;12085;12086;12087;12088;12089 12071 24 AIAELAHAEQSEVVASAYGDQDLSFGPEYIIPK Unmodified 3517.7253 0.72529487 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 1 1 2 2 2 1 51.495 50.216 3;4 1.5264E-18 24894 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 144.43 139.53 584400000 72952000 92522000 76246000 2539800 0 0 52519000 54990000 52436000 0 0 0 27768000 0 14595000 0 0 0 40127000 37840000 56859000 3004700 0 0 1020 1872 991 19792;19793;19794;19795;19796;19797;19798;19799;19800;19801;19802;19803;19804;19805;19806;19807;19808;19809;19810;19811;19812;19813 12090;12091;12092;12093;12094;12095;12096;12097;12098 12090 9 AIAEMILPK Unmodified 984.56779 0.56778878 1546 P39835 gntT High-affinity gluconate transporter yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 35.435 33.801 2 0.0072664 16156 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 67.981 67.981 291630000 0 0 0 0 0 0 21349000 29007000 21367000 0 0 0 34240000 37456000 34199000 0 0 0 39003000 33855000 31264000 0 5166900 4721200 1021 1546 992 19814;19815;19816;19817;19818;19819;19820;19821;19822;19823;19824 12099;12100;12101;12102;12103;12104;12105;12106;12107;12108 12104 10 AIAEQCDVIITMLPNSPHVK Unmodified 2235.1392 0.13915938 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.251 39.586 2;3 5.7647E-07 19393 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.65 130.33 2261400000 209440000 195360000 181810000 0 0 0 208490000 209020000 225860000 0 0 0 181700000 171710000 165150000 0 0 0 176040000 172680000 164100000 0 0 0 1022 671 993 19825;19826;19827;19828;19829;19830;19831;19832;19833;19834;19835;19836;19837;19838;19839;19840;19841;19842;19843;19844;19845;19846;19847;19848 12109;12110;12111;12112;12113;12114;12115;12116;12117;12118;12119;12120;12121;12122 12116 14 AIAEQLK Unmodified 771.44905 0.44905385 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.643 14.355 2 0.020298 4483 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 76.847 33.723 4516200000 534460000 509610000 436100000 47718000 35586000 42644000 282030000 242630000 225770000 1218600 0 0 337980000 260680000 228450000 22949000 19072000 19504000 448940000 422760000 398130000 0 0 0 1023 1031 994 19849;19850;19851;19852;19853;19854;19855;19856;19857;19858;19859;19860;19861;19862;19863;19864;19865;19866;19867 12123;12124;12125;12126;12127;12128;12129;12130 12129 6 AIAEQLKYTGNKDAAAAVGK Unmodified 2018.0797 0.07965389 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.095 33.606 3 0.1472 16353 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 17.824 15.612 2558800000 886840000 770990000 2162000 1149100 1141500 1100800 160010000 148650000 157870000 0 0 0 50586000 51187000 52446000 0 0 0 88983000 91517000 94151000 0 0 0 1024 1031 995 19868;19869;19870;19871;19872;19873;19874;19875;19876;19877;19878;19879;19880;19881;19882 12131 12131 1 AIAESIGIHVEK Unmodified 1265.698 0.69795133 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 23.013 22.417 2;3 3.0303E-05 9816 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 136.84 128.62 3179700000 201060000 229840000 217210000 0 1099400 856180 337070000 317600000 305880000 0 0 0 266050000 198110000 221950000 0 0 0 272490000 320290000 290220000 0 0 0 1025 448 996 19883;19884;19885;19886;19887;19888;19889;19890;19891;19892;19893;19894;19895;19896;19897;19898;19899;19900;19901;19902;19903;19904;19905;19906;19907;19908 12132;12133;12134;12135;12136;12137;12138;12139;12140;12141;12142;12143;12144;12145;12146;12147;12148;12149;12150;12151;12152;12153;12154;12155;12156;12157;12158;12159;12160;12161;12162;12163;12164 12136 33 AIAETLAAR Unmodified 914.51853 0.5185304 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 3 3 2 1 1 2 2 3 3 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 18.34 18.77 2 4.5448E-08 6854 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 194.25 129.45 5017200000 643730000 664630000 524240000 7871700 370700 8783300 797660000 770690000 865230000 10229000 4443500 4379500 3058300 3991200 669360000 568120 3176400 4877000 5338600 8520300 5168800 3551900 3229100 4143100 1026 868 997 19909;19910;19911;19912;19913;19914;19915;19916;19917;19918;19919;19920;19921;19922;19923;19924;19925;19926;19927;19928;19929;19930;19931;19932;19933;19934;19935;19936;19937;19938;19939;19940;19941;19942;19943;19944;19945;19946;19947;19948;19949;19950 12165;12166;12167;12168;12169;12170;12171;12172;12173;12174;12175;12176;12177;12178;12179;12180;12181;12182 12180 16 AIAFAVGK Unmodified 775.45922 0.4592246 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.339 23.435 2 0.015927 10258 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.383 43.557 1952800000 99734000 81057000 80660000 0 0 1101600 161700000 150250000 133300000 0 0 0 182830000 182860000 173850000 0 0 0 228700000 236040000 238680000 0 0 2061800 1027 1283 998 19951;19952;19953;19954;19955;19956;19957;19958;19959;19960;19961;19962;19963;19964 12183;12184;12185;12186;12187;12188;12189;12190;12191;12192;12193;12194 12189 12 AIAGDSVSGLGTGGMSTK Unmodified 1607.7825 0.78248559 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.475 25.3 2 3.0997E-22 11463 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 233.37 196.18 537220000 66570000 49693000 54087000 836350 845120 862160 42704000 33568000 36327000 1947700 1189400 2630400 39950000 33141000 31632000 0 2013200 0 42263000 47052000 46740000 1435300 0 1734700 1028 328 999 19965;19966;19967;19968;19969;19970;19971;19972;19973;19974;19975;19976;19977;19978;19979;19980;19981;19982;19983;19984;19985 12195;12196;12197;12198;12199;12200;12201;12202;12203;12204;12205 12201 11 AIAGSMIGGIPETQEMLDFCAEHGIVADIEMIR Unmodified 3573.6976 0.69758203 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.934 53.528 3 1.6967E-55 26594 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 238.36 236.51 567550000 215400000 186970000 165170000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1029 1762 1000 19986;19987;19988 12206;12207;12208 12206 3 AIAGYGVALDLTLR Unmodified 1431.8086 0.80856441 1802 P76004 ycgM Uncharacterized protein YcgM yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 49.925 48.52 2 0.00026855 23764 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.979 70.15 21207000 5940900 2730900 1983400 0 0 0 3938200 0 0 0 0 0 2176000 0 0 0 0 0 2907500 1530100 0 0 0 0 1030 1802 1001 19989;19990;19991;19992;19993;19994;19995 12209 12209 1 AIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAK Unmodified 3854.0214 0.021417314 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 3 3 1 3 3 3 1 3 3 3 2 2 3 51.45 50.193 3;4;5 1.5853E-48 24854 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 221.65 216.07 2030300000 161070000 162170000 178920000 0 2663900 0 287790000 325310000 265010000 0 3440200 0 133400000 115830000 92134000 0 0 0 92260000 89614000 120660000 0 0 0 1031 145 1002 19996;19997;19998;19999;20000;20001;20002;20003;20004;20005;20006;20007;20008;20009;20010;20011;20012;20013;20014;20015;20016;20017;20018;20019;20020;20021;20022;20023;20024;20025;20026;20027;20028;20029;20030;20031 12210;12211;12212;12213;12214;12215;12216;12217;12218;12219;12220;12221;12222;12223;12224 12211 15 AIALAAGTCQQLAR Unmodified 1442.7664 0.76638202 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.132 25.748 2 9.7886E-06 11786 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 139.43 132.3 88290000 0 0 0 0 0 1637600 9590800 9274100 8202000 1888800 1581200 0 8616700 7711400 7534400 0 0 0 12680000 10009000 9564200 0 0 0 1032 1259 1003 20032;20033;20034;20035;20036;20037;20038;20039;20040;20041;20042;20043 12225;12226;12227 12225 2 AIALIELK Unmodified 869.5586 0.5586043 763 P0AD10 yecJ Uncharacterized protein YecJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 37.051 35.398 1;2 0.0024747 16987 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.19 68.123 699580000 40379000 41926000 33719000 2952900 3630700 2986200 54087000 56906000 52747000 8646200 9315700 9510900 39949000 39719000 46675000 3089100 2237100 3303900 77314000 71133000 78017000 7604400 7229100 6505700 1033 763 1004 20044;20045;20046;20047;20048;20049;20050;20051;20052;20053;20054;20055;20056;20057;20058;20059;20060;20061;20062;20063;20064;20065;20066;20067;20068;20069;20070;20071;20072;20073;20074;20075;20076 12228;12229;12230;12231;12232;12233;12234;12235;12236;12237;12238;12239;12240;12241;12242;12243;12244;12245;12246;12247;12248;12249;12250;12251 12247 23 AIAMLNEPEIIK Unmodified 1340.7374 0.7373733 1289 P27128 rfaI Lipopolysaccharide 1,3-galactosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.934 38.071 2 0.00090958 18389 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 78.655 78.072 72399000 3906000 3040500 4547300 0 0 0 8875100 9934600 6431600 2037700 2157800 2208400 5164900 5087400 4620500 0 0 0 0 7821400 6565500 0 0 0 1034 1289 1005 20077;20078;20079;20080;20081;20082;20083;20084;20085;20086;20087;20088;20089;20090 12252;12253;12254 12254 3 AIANAITLEFTDGTR Unmodified 1591.8206 0.82058566 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 43.729 42.39 2;3 6.4664E-27 20760 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 230.41 221.83 167570000 64843000 52147000 50580000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1035 1888 1006 20091;20092;20093;20094;20095;20096 12255;12256;12257;12258;12259 12255 5 AIANAQR Unmodified 742.40859 0.40858602 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 9.245 9.8991 2 0.0016613 1980 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 126.05 91.154 965460000 43272000 27633000 17115000 6995400 7219600 7442600 0 14067000 14070000 91202000 67378000 72959000 18642000 28625000 11951000 51253000 53298000 53046000 35351000 196910000 32049000 46844000 36206000 31936000 1036 1057 1007 20097;20098;20099;20100;20101;20102;20103;20104;20105;20106;20107;20108;20109;20110;20111;20112;20113;20114;20115;20116;20117;20118;20119;20120;20121;20122;20123;20124 12260;12261;12262;12263;12264;12265;12266;12267;12268;12269;12270 12262 8 AIAQGTR Unmodified 715.39769 0.39768698 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 9.2088 9.8928 2 0.13162 2096 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 48.115 38.875 12949000 6672600 3615400 0 0 0 0 2661300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1037 1554 1008 20125;20126;20127 12271 12271 1 AIAQVGTISANSDETVGK Unmodified 1759.8952 0.89520716 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 2 3 2 3 3 3 2 3 2 2 3 1 2 2 2 2 3 1 2 1 26.082 24.95 2;3 2.123E-36 10504 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 283.83 277.13 12636000000 1071800000 959270000 960790000 44795000 45050000 44535000 1118500000 984120000 977400000 39077000 42856000 39275000 934430000 881410000 907930000 10920000 7388300 7601200 1190600000 1178100000 1117200000 22569000 30945000 19361000 1038 240 1009 20128;20129;20130;20131;20132;20133;20134;20135;20136;20137;20138;20139;20140;20141;20142;20143;20144;20145;20146;20147;20148;20149;20150;20151;20152;20153;20154;20155;20156;20157;20158;20159;20160;20161;20162;20163;20164;20165;20166;20167;20168;20169;20170;20171;20172;20173;20174;20175;20176;20177;20178;20179;20180;20181 12272;12273;12274;12275;12276;12277;12278;12279;12280;12281;12282;12283;12284;12285;12286;12287;12288;12289;12290;12291;12292;12293;12294;12295;12296;12297;12298;12299;12300;12301;12302;12303;12304;12305;12306;12307;12308;12309;12310;12311;12312;12313;12314;12315;12316;12317;12318;12319;12320;12321;12322;12323;12324;12325;12326;12327;12328;12329;12330;12331;12332;12333;12334 12330 62 AIASAGLPALVSNSFSK Unmodified 1631.8883 0.88827129 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.322 43.907 2 4.9369E-14 21374 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 170.07 135.53 359090000 37391000 35823000 29445000 0 0 0 33767000 34505000 32966000 0 0 0 23450000 20091000 21874000 0 0 0 28701000 30094000 30986000 0 0 0 1039 91 1010 20182;20183;20184;20185;20186;20187;20188;20189;20190;20191;20192;20193 12335;12336;12337;12338;12339;12340;12341;12342;12343;12344;12345;12346 12338 12 AIASDCADGMTK Unmodified 1238.5271 0.52712253 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 3 2 3 2 1 3 1 2 2 2 1 1 1 2 3 2 2 2 2 13.665 14.346 2 3.8018E-12 3726 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 197.27 193.78 26771000000 1416400000 1162900000 1252700000 2779600000 2530800000 3261100000 1087600000 1083500000 1075700000 233430000 248360000 239560000 674790000 786510000 683130000 79095000 58179000 54577000 1267100000 1201800000 1209800000 1581100000 1360300000 1442500000 1040 542 1011 20194;20195;20196;20197;20198;20199;20200;20201;20202;20203;20204;20205;20206;20207;20208;20209;20210;20211;20212;20213;20214;20215;20216;20217;20218;20219;20220;20221;20222;20223;20224;20225;20226;20227;20228;20229;20230;20231;20232;20233;20234;20235;20236;20237;20238;20239;20240;20241 12347;12348;12349;12350;12351;12352;12353;12354;12355;12356;12357;12358;12359;12360;12361;12362;12363;12364;12365;12366;12367;12368;12369;12370;12371;12372;12373;12374;12375;12376;12377;12378;12379;12380;12381;12382;12383;12384;12385;12386;12387;12388 12358 42 AIASDCADGMTK Oxidation (M) 1254.522 0.52203715 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 1 1 1 2 2 1 2 2 1 13.277 13.951 2 7.8677E-06 2303 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 132.88 132.18 213650000 0 0 0 55104000 53002000 46327000 2973700 2119500 0 1266200 1648700 1633400 1928700 15030000 11748000 0 0 882260 0 0 0 7013800 7608400 5364800 1041 542 1011 20242;20243;20244;20245;20246;20247;20248;20249;20250;20251;20252;20253;20254;20255;20256;20257;20258;20259;20260;20261;20262;20263;20264 12389;12390;12391;12392;12393;12394;12395;12396;12397;12398;12399;12400 12398 323 12 AIATAHHAQETF Unmodified 1295.6258 0.62584901 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 12.661 13.554 3 0.16736 4160 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 6.9211 4.2867 87080000 28623000 25539000 24885000 3273900 2133600 2624700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1042 46 1012 20265;20266;20267;20268;20269;20270 12401 12401 1 AIATPDR Unmodified 742.39735 0.39735263 661 P0ABJ1 cyoA Cytochrome bo(3) ubiquinol oxidase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 11.547 12.226 2 0.0034949 3348 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.74 94.537 1263800000 43436000 36162000 37357000 19955000 16827000 18195000 82296000 85222000 72584000 31465000 24023000 26098000 92249000 89321000 76163000 0 7372900 7974200 146000000 149230000 131420000 27070000 21816000 21545000 1043 661 1013 20271;20272;20273;20274;20275;20276;20277;20278;20279;20280;20281;20282;20283;20284;20285;20286;20287;20288;20289;20290;20291;20292;20293;20294;20295;20296;20297;20298;20299;20300;20301 12402;12403;12404;12405;12406;12407;12408;12409;12410;12411;12412;12413;12414;12415;12416;12417;12418;12419;12420;12421;12422;12423;12424 12413 23 AIAVPGSFNDQFADADIR Unmodified 1905.9221 0.92209062 120 P05804 uidA Beta-glucuronidase yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 44.237 42.91 2 0.043242 20777 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 65.295 59.418 26294000 0 8348500 8967500 0 0 0 0 0 0 0 0 0 0 5190200 3787700 0 0 0 0 0 0 0 0 0 1044 120 1014 20302;20303;20304;20305 12425 12425 0 AIAVQAYQTLGCAGMAR Unmodified 1779.876 0.87600882 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.326 34.769 2 1.119E-49 16743 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 273.8 264.48 431130000 29608000 33277000 31860000 0 0 0 50702000 41737000 44335000 0 0 0 32226000 33568000 33230000 0 0 0 37290000 29862000 33435000 0 0 0 1045 253 1015 20306;20307;20308;20309;20310;20311;20312;20313;20314;20315;20316;20317 12426;12427;12428;12429;12430;12431;12432;12433;12434;12435;12436;12437 12429 12 AIDAAER Unmodified 744.37662 0.37661719 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 2 1 10.845 11.548 2 0.0017557 2885 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.37 93.315 3268900000 737030000 701350000 741850000 1253800 0 2284600 112190000 103960000 102440000 0 4404800 0 76943000 83083000 81952000 3076200 0 3254300 164460000 166800000 178130000 0 0 4481500 1046 1264 1016 20318;20319;20320;20321;20322;20323;20324;20325;20326;20327;20328;20329;20330;20331;20332;20333;20334;20335;20336;20337;20338;20339 12438;12439;12440;12441;12442;12443;12444;12445 12444 8 AIDAAHALQESR Unmodified 1280.6473 0.64731274 1127 P16687 phnI Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 16.992 17.786 2;3 2.3408E-05 6363 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 120.06 113.76 71574000 0 0 0 0 0 0 0 3711000 4356700 0 0 0 5477300 0 2246900 0 0 0 18422000 20223000 17138000 0 0 0 1047 1127 1017 20340;20341;20342;20343;20344;20345;20346;20347;20348;20349 12446;12447;12448;12449;12450;12451 12449 6 AIDACITR Unmodified 918.4593 0.45930096 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 1 2 1 1 1 1 1 1 1 1 1 16.883 17.335 2 0.00048964 6226 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.11 81.956 470140000 4932200 4683500 5659100 0 0 0 81901000 78825000 81460000 20970000 18245000 9541200 22056000 22679000 20940000 3335000 1379200 1718100 34933000 29979000 26908000 0 0 0 1048 210 1018 20350;20351;20352;20353;20354;20355;20356;20357;20358;20359;20360;20361;20362;20363;20364;20365;20366;20367;20368;20369;20370;20371;20372 12452;12453;12454;12455;12456;12457;12458;12459;12460;12461 12457 10 AIDDAAAGKPFDTSLLETLEGLAHR Unmodified 2610.3289 0.3289453 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 53.606 52.328 3;4 1.5249E-40 25497 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 203.79 201.48 1327400000 106570000 100100000 103210000 0 0 0 110880000 104750000 98201000 0 0 0 103480000 113230000 100790000 2680100 4556600 4463800 123520000 129960000 117410000 0 3568900 0 1049 1856 1019 20373;20374;20375;20376;20377;20378;20379;20380;20381;20382;20383;20384;20385;20386;20387;20388;20389;20390;20391;20392;20393;20394;20395;20396;20397;20398;20399;20400 12462;12463;12464;12465;12466;12467;12468;12469;12470;12471;12472;12473;12474 12472 12 AIDDHTLEVTLSEPVPYFYK Unmodified 2336.1576 0.15762944 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 3 3 2 2 2 3 3 3 1 3 3 3 3 2 3 1 1 50.726 49.391 2;3;4 4.4639E-56 24115 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 347.46 321.34 18170000000 4725000000 4947300000 4405800000 35998000 31584000 28782000 479150000 503310000 440020000 0 0 4636200 408440000 400560000 326030000 0 0 0 468780000 481940000 474370000 2835500 5457800 0 1050 1217 1020 20401;20402;20403;20404;20405;20406;20407;20408;20409;20410;20411;20412;20413;20414;20415;20416;20417;20418;20419;20420;20421;20422;20423;20424;20425;20426;20427;20428;20429;20430;20431;20432;20433;20434;20435;20436;20437;20438;20439;20440;20441;20442;20443;20444;20445 12475;12476;12477;12478;12479;12480;12481;12482;12483;12484;12485;12486;12487;12488;12489;12490;12491;12492;12493;12494;12495;12496;12497;12498;12499;12500;12501;12502;12503;12504;12505;12506;12507 12496 33 AIDDLVK Unmodified 772.43307 0.43306943 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.604 22.075 2 0.0078297 9550 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 89.673 64.675 3458800000 233600000 227050000 216980000 0 0 0 366470000 379090000 346430000 0 0 0 291400000 257030000 307780000 0 0 0 296460000 267510000 268970000 0 0 0 1051 299 1021 20446;20447;20448;20449;20450;20451;20452;20453;20454;20455;20456;20457 12508;12509;12510;12511;12512;12513;12514;12515;12516;12517;12518 12510 11 AIDEAELVALGK Unmodified 1227.6711 0.67106787 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.569 35.788 2 0.00046168 16646 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 100.48 84.274 211080000 22519000 21442000 19395000 0 0 0 15930000 17426000 16953000 0 522930 801100 13611000 16260000 13022000 0 0 0 16843000 19579000 16777000 0 0 0 1052 389 1022 20458;20459;20460;20461;20462;20463;20464;20465;20466;20467;20468;20469;20470;20471 12519;12520;12521;12522;12523;12524 12523 6 AIDENCFFSDEVPDR Unmodified 1812.7625 0.76247843 1841 P76245 yeaP Probable diguanylate cyclase YeaP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.009 38.343 2 2.5507E-20 18657 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 216.06 209.82 79458000 11070000 10413000 10000000 0 0 0 4416400 6002300 4849700 0 0 0 5245500 4985000 3306600 0 0 0 6902000 6680500 5587600 0 0 0 1053 1841 1023 20472;20473;20474;20475;20476;20477;20478;20479;20480;20481;20482;20483 12525;12526;12527;12528 12527 4 AIDENKQK Unmodified 944.49271 0.49270958 343 P0A7G6 recA Protein RecA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 8.1575 8.5295 2 0.0020329 1645 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 111.04 61.677 147050000 0 0 0 9009100 7393800 8613300 0 0 0 24413000 21045000 24871000 0 0 0 8906400 3983100 2585400 0 0 0 10925000 11913000 13395000 1054 343 1024 20484;20485;20486;20487;20488;20489;20490;20491;20492;20493;20494;20495 12529;12530;12531;12532;12533;12534;12535;12536;12537 12529 9 AIDFSDGYYK Unmodified 1177.5292 0.52915466 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.555 30.051 2 0.0001081 14116 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 103.56 100.15 2402100000 0 970850000 827280000 0 994820 0 134480000 134860000 131570000 0 0 0 0 0 0 0 0 0 0 0 202020000 0 0 0 1055 877 1025 20496;20497;20498;20499;20500;20501;20502;20503;20504;20505;20506;20507 12538;12539;12540;12541;12542;12543;12544;12545;12546;12547;12548 12542 11 AIDKPFLLPIEDVFSISGR Unmodified 2116.1568 0.15684158 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 3 2 5 4 4 2 1 1 4 4 3 3 3 3 1 54.782 53.334 3;4 8.6125E-18 26512 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.2 123.42 105530000000 7782900000 8741500000 7663000000 3819900 0 0 8899300000 8462600000 8621800000 177530000 161170000 149400000 8563500000 8053100000 8448000000 0 0 0 10533000000 10214000000 9055200000 0 2134100 0 1056 1048 1026 20508;20509;20510;20511;20512;20513;20514;20515;20516;20517;20518;20519;20520;20521;20522;20523;20524;20525;20526;20527;20528;20529;20530;20531;20532;20533;20534;20535;20536;20537;20538;20539;20540;20541;20542;20543;20544;20545;20546;20547;20548;20549;20550;20551;20552;20553;20554;20555;20556;20557 12549;12550;12551;12552;12553;12554;12555;12556;12557;12558;12559;12560;12561;12562;12563;12564;12565;12566;12567;12568;12569;12570;12571;12572;12573;12574;12575;12576;12577;12578;12579;12580;12581;12582;12583;12584;12585;12586;12587;12588;12589;12590 12550 41 AIDLIDEAASSIR Unmodified 1372.7198 0.71980898 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 46.43 44.892 2;3 1.4764E-12 22158 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 194.54 175.76 1931700000 206250000 225680000 179810000 3221900 3914400 4190100 247180000 231650000 228140000 0 6552300 6526300 98343000 81843000 79668000 0 0 0 114920000 108410000 103550000 1896500 0 0 1057 1662 1027 20558;20559;20560;20561;20562;20563;20564;20565;20566;20567;20568;20569;20570;20571;20572;20573;20574;20575;20576;20577;20578;20579;20580;20581;20582;20583;20584;20585;20586;20587 12591;12592;12593;12594;12595;12596;12597;12598;12599;12600;12601;12602;12603;12604;12605;12606;12607;12608;12609;12610;12611;12612;12613;12614 12595 24 AIDLLNQVGIPDPASR Unmodified 1677.905 0.90498399 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 2 2 2 1 1 1 1 50.175 48.825 2;3 1.4455E-10 17614 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 178.32 163.18 105070000 28068000 25278000 15960000 8169700 8093700 8142400 0 0 0 0 0 0 1682000 0 0 0 0 0 2787900 3116100 3771800 0 0 0 1058 592 1028 20588;20589;20590;20591;20592;20593;20594;20595;20596;20597;20598;20599;20600;20601;20602 12615;12616;12617;12618;12619 12615 5 AIDMHISNLR Unmodified 1168.6023 0.6022768 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 2 2 2 1 1 1 24.298 23.417 2;3 0.0002929 10234 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.09 116.93 1207600000 130840000 129070000 128480000 8787300 9097900 9825600 92876000 77856000 108130000 7441400 6522300 6695300 33757000 31801000 31557000 50822000 57404000 53881000 69486000 73564000 69421000 7293000 6210600 6734800 1059 841 1029 20603;20604;20605;20606;20607;20608;20609;20610;20611;20612;20613;20614;20615;20616;20617;20618;20619;20620;20621;20622;20623;20624;20625;20626;20627;20628;20629;20630;20631;20632;20633;20634;20635 12620;12621;12622;12623;12624;12625;12626;12627;12628;12629;12630;12631;12632;12633;12634;12635;12636;12637;12638;12639;12640;12641;12642 12631 23 AIDQAGIQFR Unmodified 1117.588 0.58800695 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.845 25.698 2 0.053437 12080 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 53.878 46.311 486850000 32403000 38127000 32179000 0 0 0 40932000 39035000 38478000 0 0 0 33389000 30128000 31778000 0 0 0 57123000 49952000 63323000 0 0 0 1060 280 1030 20636;20637;20638;20639;20640;20641;20642;20643;20644;20645;20646;20647 12643 12643 0 AIDVIDEAGAR Unmodified 1128.5775 0.57750184 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.667 25.361 2 0.048884 10865 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 61.65 53.725 242230000 52937000 0 45472000 3939400 3240100 3887800 0 24277000 28617000 10379000 9675200 12880000 0 18096000 17305000 0 0 0 1055900 0 0 3500800 3100500 3871400 1061 658 1031 20648;20649;20650;20651;20652;20653;20654;20655;20656;20657;20658;20659;20660;20661;20662;20663 12644;12645 12645 0 AIDVNGVK Unmodified 814.45487 0.45486751 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.961 15.605 2 0.0012251 5181 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.63 45.876 374420000 28254000 35119000 27768000 1404100 2220900 2499400 36556000 31794000 35170000 5483200 4060400 4879400 28915000 24319000 18397000 0 0 0 45586000 1299000 36636000 2008600 0 2049000 1062 59 1032 20664;20665;20666;20667;20668;20669;20670;20671;20672;20673;20674;20675;20676;20677;20678;20679;20680;20681;20682;20683 12646;12647;12648;12649;12650;12651 12650 3 AIEALTEAIK Unmodified 1057.6019 0.60192568 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.564 30.187 2 4.5348E-05 14023 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.1 93.016 428340000 55980000 57305000 54006000 3845700 3429300 3895100 32424000 27958000 27091000 16423000 14960000 15262000 18109000 19285000 16586000 2635100 2976600 2833200 14377000 16324000 17785000 2001200 2845100 0 1063 658 1033 20684;20685;20686;20687;20688;20689;20690;20691;20692;20693;20694;20695;20696;20697;20698;20699;20700;20701;20702;20703;20704;20705;20706 12652;12653;12654;12655;12656;12657;12658;12659;12660;12661;12662;12663;12664 12661 11 AIEEFGPYK Unmodified 1052.5179 0.51786169 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.284 25.028 2 0.014936 11163 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.854 71.717 749260000 64198000 57000000 56003000 441400 0 413700 82809000 67580000 69371000 0 396760 623290 59579000 50727000 61666000 0 0 0 60251000 57531000 58750000 640370 651380 631620 1064 801 1034 20707;20708;20709;20710;20711;20712;20713;20714;20715;20716;20717;20718;20719;20720;20721;20722;20723;20724;20725 12665;12666;12667;12668;12669;12670;12671;12672;12673 12669 0 AIEEGKLESFVTDFYQR Unmodified 2030.9949 0.99492121 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 2 2 2 1 1 1 45.889 44.984 2;3 8.8965E-11 15979 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 143.67 134.14 303620000 9249800 7514700 6758300 0 0 0 9981200 9181100 6236200 0 0 0 0 7466900 8850200 74168000 58054000 71126000 13294000 12307000 9429900 0 0 0 1065 395 1035 20726;20727;20728;20729;20730;20731;20732;20733;20734;20735;20736;20737;20738;20739;20740;20741;20742 12674;12675;12676;12677;12678 12676 5 AIEIIAGALR Unmodified 1025.6233 0.62332982 552 P0A9S1 fucO Lactaldehyde reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 37.398 35.712 2 0.00054797 17127 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.909 63.555 89010000 14274000 19955000 11376000 0 0 0 7291300 7955100 6858200 0 0 0 8235000 7270300 5796200 0 0 0 0 0 0 0 0 0 1066 552 1036 20743;20744;20745;20746;20747;20748;20749;20750;20751 12679;12680;12681;12682;12683 12683 2 AIEIKVPDIGADEVEITEILVK Unmodified 2393.3305 0.33050843 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 2 2 2 2 4 3 3 54.593 53.446 2;3;4 5.3932E-28 21290 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 137.72 133.84 10953000000 0 0 0 2201900000 1959800000 2267500000 0 0 0 113290000 94881000 70638000 0 0 0 100960000 143530000 196540000 0 0 0 1206800000 1264300000 1332400000 1067 133 1037 20752;20753;20754;20755;20756;20757;20758;20759;20760;20761;20762;20763;20764;20765;20766;20767;20768;20769;20770;20771;20772;20773;20774;20775;20776;20777;20778;20779;20780;20781;20782;20783;20784 12684;12685;12686;12687;12688;12689;12690;12691;12692;12693;12694;12695;12696;12697;12698;12699;12700;12701;12702;12703;12704;12705;12706 12688 23 AIELLGTMQGGYNIHPLIDALDDAK Unmodified 2667.3578 0.35780258 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 54.083 52.657 2;3 2.2221E-72 26063 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 290.92 280.07 6367200000 979750000 963700000 832870000 16263000 18264000 14643000 284600000 288640000 240000000 0 0 0 372150000 290160000 356120000 0 0 0 607890000 567640000 534490000 0 0 0 1068 1444 1038 20785;20786;20787;20788;20789;20790;20791;20792;20793;20794;20795;20796;20797;20798;20799;20800;20801;20802;20803;20804;20805;20806;20807;20808;20809;20810;20811 12707;12708;12709;12710;12711;12712;12713;12714;12715;12716;12717;12718;12719;12720;12721;12722;12723;12724;12725;12726;12727;12728;12729;12730;12731 12721 25 AIELLSK Unmodified 772.46945 0.46945494 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.385 23.451 2 0.0019296 10196 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.29 28.6 2738200000 0 0 0 3234600 3572000 3681800 229400000 214770000 210070000 6373800 4425500 4646400 344510000 303980000 246940000 7291800 6596200 5894700 390810000 396400000 329530000 8883200 9532600 7661500 1069 38 1039 20812;20813;20814;20815;20816;20817;20818;20819;20820;20821;20822;20823;20824;20825;20826;20827;20828;20829;20830;20831;20832 12732;12733;12734;12735;12736;12737;12738 12736 7 AIEMAGIEK Unmodified 960.49502 0.49501776 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.118 22.118 2 0.0049915 9388 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 76.064 44.109 1823800000 175730000 151130000 107700000 0 0 0 143110000 128200000 128460000 0 0 0 156540000 143280000 164050000 0 0 0 173920000 181360000 170340000 0 0 0 1070 273 1040 20833;20834;20835;20836;20837;20838;20839;20840;20841;20842;20843;20844 12739;12740;12741;12742;12743;12744;12745;12746;12747;12748 12739 7 AIENFYISNNK Unmodified 1311.6459 0.64591575 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.615 27.311 2 1.5646E-07 12648 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 169.12 140.04 3346700000 178610000 179000000 155770000 0 0 0 425270000 396570000 406900000 0 0 0 320150000 312810000 295620000 0 0 0 213470000 242730000 215040000 0 2385700 2399600 1071 697 1041 20845;20846;20847;20848;20849;20850;20851;20852;20853;20854;20855;20856;20857;20858 12749;12750;12751;12752;12753;12754;12755;12756;12757;12758;12759;12760 12752 12 AIENQAYVAGCNR Unmodified 1464.678 0.67796094 1976 Q47679 yafV Hydrolase YafV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 16.596 17.339 2 2.1753E-17 6208 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 209.6 201.71 78467000 10453000 9718100 7754400 0 0 0 7087500 8851500 7182200 0 0 0 5714400 5369100 0 0 0 0 4783200 5887400 5666400 0 0 0 1072 1976 1042 20859;20860;20861;20862;20863;20864;20865;20866;20867;20868;20869 12761;12762;12763;12764 12761 4 AIEQDAK Unmodified 773.39193 0.3919329 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 7.9524 8.811 2 0.0043665 2118 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.11 75.688 395110000 65170000 104910000 170100000 0 0 0 0 0 0 0 0 0 6974600 6521700 6182100 0 0 0 11172000 11390000 12690000 0 0 0 1073 852 1043 20870;20871;20872;20873;20874;20875;20876;20877;20878 12765;12766;12767;12768;12769;12770;12771;12772;12773;12774;12775 12769 11 AIEQTAITR Unmodified 1001.5506 0.55055881 1150 P18335 argD Acetylornithine/succinyldiaminopimelate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.629 15.394 2 0.00037215 5168 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.95 49.233 156230000 23846000 19474000 16570000 0 0 0 13987000 14003000 11374000 0 0 0 8458700 6784400 6820200 0 0 0 10633000 12671000 11609000 0 0 0 1074 1150 1044 20879;20880;20881;20882;20883;20884;20885;20886;20887;20888;20889;20890 12776;12777;12778;12779;12780;12781;12782;12783;12784 12779 9 AIEWDEAFK Unmodified 1107.5237 0.52367535 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.879 37.205 2 0.00097193 17894 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.492 90.388 431760000 44673000 39715000 42378000 0 0 0 92212000 83967000 80695000 0 0 0 6035300 7252900 9083500 0 0 0 7487500 9753300 8508000 0 0 0 1075 1191 1045 20891;20892;20893;20894;20895;20896;20897;20898;20899;20900;20901;20902 12785;12786;12787;12788;12789;12790;12791;12792 12791 8 AIEWDEAFKK Unmodified 1235.6186 0.61863837 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 1 1 2 1 1 2 2 2 1 1 1 1 1 1 2 1 1 29.723 28.25 2;3 0.002773 13402 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 80.219 68.172 887710000 100470000 66939000 63168000 2544100 1079200 1387900 204630000 176050000 173300000 3600100 3047900 2709300 10734000 9725200 10122000 0 0 0 21967000 18002000 18222000 0 0 0 1076 1191 1046 20903;20904;20905;20906;20907;20908;20909;20910;20911;20912;20913;20914;20915;20916;20917;20918;20919;20920;20921;20922;20923;20924;20925;20926 12793;12794;12795;12796;12797;12798;12799;12800;12801;12802;12803;12804;12805;12806 12798 11 AIFNDEEK Unmodified 964.45018 0.45017606 1834 P76216 astB N-succinylarginine dihydrolase yes yes 0 0 0 By MS/MS By MS/MS 1 1 16.495 17.217 2 0.089049 6082 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.286 58.286 31662000 0 14912000 16750000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1077 1834 1047 20927;20928 12807;12808 12807 0 AIFPNPDHTLLPGMFVR Unmodified 1924.0029 0.0029238935 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 1 1 1 49.545 48.243 2;3 2.1353E-11 23545 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 198.55 192.6 1936700000 96362000 83618000 79791000 20945000 23442000 18427000 154120000 153160000 145960000 111050000 83161000 76961000 96747000 96239000 78631000 22977000 16414000 18233000 155600000 152240000 163560000 31779000 24097000 33174000 1078 826 1048 20929;20930;20931;20932;20933;20934;20935;20936;20937;20938;20939;20940;20941;20942;20943;20944;20945;20946;20947;20948;20949;20950;20951;20952;20953;20954;20955;20956;20957;20958;20959;20960;20961;20962;20963;20964;20965;20966;20967;20968;20969 12809;12810;12811;12812;12813;12814;12815;12816;12817;12818;12819;12820;12821;12822;12823;12824;12825;12826;12827;12828;12829;12830;12831;12832;12833;12834;12835;12836;12837 12823 29 AIGAGELSPR Unmodified 969.52434 0.52434406 1684 P64540 yfcL Uncharacterized protein YfcL yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 18.823 19.394 2 0.00022235 7311 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 119.21 96.191 943670000 70463000 73159000 50431000 0 656330 0 65179000 66614000 59930000 0 0 0 74717000 59948000 62606000 0 0 0 123000000 124050000 112920000 0 0 0 1079 1684 1049 20970;20971;20972;20973;20974;20975;20976;20977;20978;20979;20980;20981;20982 12838;12839;12840;12841;12842 12841 5 AIGALLTR Unmodified 813.50724 0.50723743 1996 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 24.549 23.678 2 0.002848 8179 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 97.068 35.07 3081100000 157900000 131530000 126160000 21831000 18660000 17212000 0 0 0 232740000 216080000 209870000 344070000 310780000 354710000 22103000 18039000 17877000 262380000 254050000 247770000 42436000 36693000 38192000 + 1080 1996 1050 20983;20984;20985;20986;20987;20988;20989;20990;20991;20992;20993;20994;20995;20996;20997;20998;20999;21000;21001;21002;21003;21004;21005;21006;21007;21008;21009;21010;21011;21012;21013;21014;21015;21016;21017;21018;21019;21020;21021;21022;21023;21024 12843;12844;12845;12846;12847;12848;12849;12850;12851;12852;12853;12854;12855;12856;12857;12858;12859;12860;12861;12862;12863 12850 21 AIGDAIAAGLGEGA Unmodified 1184.6037 0.60371659 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 47.142 45.64 2 0.013562 22262 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 55.461 47.536 140950000 15666000 16002000 14052000 0 0 0 13804000 14232000 13722000 0 0 2222300 16380000 16236000 16979000 0 0 0 0 0 0 1648400 0 0 1081 1748 1051 21025;21026;21027;21028;21029;21030;21031;21032;21033;21034;21035 12864 12864 1 AIGDQWVVTSGLQAGDR Unmodified 1771.8853 0.88531118 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 2 42.028 39.845 2;3 8.614E-14 16176 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 203.39 193.74 77404000 0 0 0 1905900 2019800 2352500 0 17065000 16910000 11868000 13103000 12180000 0 0 0 0 0 0 0 0 0 0 0 0 1082 1477 1052 21036;21037;21038;21039;21040;21041;21042;21043;21044;21045;21046;21047;21048 12865;12866;12867;12868;12869;12870;12871;12872 12866 8 AIGEAKDDDTADILTAASR Unmodified 1931.9436 0.94361392 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 1 2 1 1 1 29.911 28.329 2;3 1.1067E-55 13141 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 346.89 339.52 2314300000 662840000 616720000 611770000 29020000 25183000 23595000 26561000 23890000 143000000 32716000 33765000 29686000 2417800 0 0 0 0 0 38556000 4916000 6695400 0 2941700 0 1083 677 1053 21049;21050;21051;21052;21053;21054;21055;21056;21057;21058;21059;21060;21061;21062;21063;21064;21065;21066;21067;21068;21069;21070;21071;21072;21073;21074;21075;21076;21077 12873;12874;12875;12876;12877;12878;12879;12880;12881;12882;12883;12884;12885;12886;12887;12888;12889;12890;12891;12892 12891 20 AIGEVTDVVEK Unmodified 1158.6132 0.61321864 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.91 23.922 2 0.00019248 10559 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 123.86 97.258 1558900000 137990000 141940000 122460000 0 0 0 125220000 123090000 122840000 0 0 0 115460000 107050000 89724000 0 0 0 176530000 160020000 136550000 0 0 0 1084 1634 1054 21078;21079;21080;21081;21082;21083;21084;21085;21086;21087;21088;21089 12893;12894;12895;12896;12897 12894 4 AIGFLLSK Unmodified 847.51674 0.51673948 934 P0AFF2 nupC Nucleoside permease NupC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 37.059 35.171 2 0.016638 17452 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 68.214 45.762 169010000 4207700 4598500 3474900 0 0 0 21959000 21290000 23592000 3333200 2738200 2832900 10938000 12383000 9528800 0 0 0 16413000 14442000 13836000 1155200 1195800 1093400 1085 934 1055 21090;21091;21092;21093;21094;21095;21096;21097;21098;21099;21100;21101;21102;21103;21104;21105;21106;21107;21108;21109;21110 12898;12899;12900;12901;12902 12901 5 AIGFVGIEPK Unmodified 1029.5859 0.58588168 859 P0AEH1 rseP Regulator of sigma-E protease RseP yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 35.215 33.108 2 0.0038032 12729 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 70.919 45.996 17072000 0 0 0 448480 1638900 0 0 0 0 3110900 2457600 2897900 0 0 0 0 0 0 0 0 0 2256000 1887700 2374100 1086 859 1056 21111;21112;21113;21114;21115;21116;21117;21118 12903 12903 1 AIGGGLSSVGGGSSTIK Unmodified 1446.7678 0.7678218 8 CON__P48668;CON__P02538 yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 24.612 23.346 2 0.00022344 8394 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 88.087 71.061 12792000 0 0 0 802060 782850 668080 0 0 0 4135000 2976500 3427700 0 0 0 0 0 0 0 0 0 0 0 0 + 1087 8 1057 21119;21120;21121;21122;21123;21124 12904;12905;12906 12905 3 AIGGGVLEALMMLMHQGVK Unmodified 1954.0202 0.020230217 1953 Q46808 yqeB Uncharacterized protein YqeB yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 55.452 54.038 3 0.0009143 21754 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 63.337 55.607 34850000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13474000 12315000 9060300 1088 1953 1058 21125;21126;21127 12907;12908 12908 2 AIGIDIDPQAIQASR Unmodified 1566.8366 0.83657007 457 P0A8T1 prmA Ribosomal protein L11 methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.243 39.4 2 2.4889E-07 19606 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 167.84 160.28 821350000 58499000 51836000 46083000 0 1314400 0 90466000 84805000 72993000 2805700 1770300 2651800 57059000 49792000 51398000 0 0 0 87652000 79829000 82397000 0 0 0 1089 457 1059 21128;21129;21130;21131;21132;21133;21134;21135;21136;21137;21138;21139;21140;21141;21142;21143 12909;12910;12911;12912;12913;12914;12915;12916;12917;12918;12919 12910 9 AIGIEQPSLVR Unmodified 1181.6768 0.67682195 466 P0A8W2 slyA Transcriptional regulator SlyA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.155 29.557 2 1.2982E-19 13194 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 230.09 192.37 1284000000 136350000 122660000 111610000 1383400 0 1196100 143100000 131730000 120040000 1880900 2375900 2551400 84457000 75536000 69719000 0 0 0 88446000 92266000 93647000 1878200 1736400 1391800 1090 466 1060 21144;21145;21146;21147;21148;21149;21150;21151;21152;21153;21154;21155;21156;21157;21158;21159;21160;21161;21162;21163 12920;12921;12922;12923;12924;12925;12926;12927;12928;12929;12930;12931 12931 12 AIGINFIDTYIR Unmodified 1394.7558 0.75580056 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 52.217 50.942 2 2.9553E-23 25095 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 233.46 211.37 1303100000 197490000 198090000 155630000 0 0 0 191110000 162820000 162280000 2528900 0 0 40313000 44913000 40007000 0 0 0 36194000 37529000 34194000 0 0 0 1091 1316 1061 21164;21165;21166;21167;21168;21169;21170;21171;21172;21173;21174;21175;21176 12932;12933;12934;12935;12936;12937;12938;12939;12940;12941;12942;12943 12934 12 AIGTVSAVNIGSIFR Unmodified 1503.8409 0.84092717 1811 P76049 ycjY Uncharacterized protein YcjY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 49.363 47.988 2 2.3595E-08 23360 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 169.52 160.94 57589000 8501600 9868500 8982000 0 0 0 5862500 4220200 6143200 0 0 0 0 2719300 2142600 0 0 0 2151400 4255800 2742100 0 0 0 1092 1811 1062 21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187 12944;12945;12946;12947;12948 12946 4 AIHTLWNVLDELDQAWLPVEK Unmodified 2489.2955 0.29546032 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 1 3 2 3 1 1 1 3 3 3 3 3 3 1 1 55.453 53.992 2;3;4 3.3507E-88 26786 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 389.74 385.64 15807000000 1935300000 2092000000 1879300000 14904000 18539000 18592000 1010000000 1091700000 998850000 4220300 4148100 3005900 969020000 908860000 910190000 0 0 0 1276600000 1377100000 1285000000 5752300 0 3365900 1093 1652 1063 21188;21189;21190;21191;21192;21193;21194;21195;21196;21197;21198;21199;21200;21201;21202;21203;21204;21205;21206;21207;21208;21209;21210;21211;21212;21213;21214;21215;21216;21217;21218;21219;21220;21221;21222;21223;21224;21225;21226;21227;21228;21229;21230 12949;12950;12951;12952;12953;12954;12955;12956;12957;12958;12959;12960;12961;12962;12963;12964;12965;12966;12967;12968;12969;12970;12971;12972;12973;12974;12975;12976;12977;12978;12979;12980 12955 32 AIIEDAGLVWSVVESVPIHEDIK Unmodified 2518.3319 0.33190541 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.949 53.476 3 9.1674E-07 26314 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 102.48 99.718 778210000 110830000 97473000 107420000 0 0 0 57588000 51000000 46228000 0 0 0 59724000 56090000 50631000 0 0 0 54846000 41050000 45328000 0 0 0 1094 1244 1064 21231;21232;21233;21234;21235;21236;21237;21238;21239;21240;21241;21242 12981;12982;12983;12984;12985;12986;12987;12988;12989 12986 9 AIIFANTK Unmodified 876.5069 0.50690308 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By MS/MS 1 22.476 21.977 2 0.003434 6778 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 90.777 74.623 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1095 438 1065 21243 12990 12990 1 AIIGLVK Unmodified 712.48471 0.48471107 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 2 1 2 1 1 2 26.805 25.653 1;2 0.019434 11316 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 77.72 77.72 1206700000 186590000 160260000 147430000 67424000 61874000 67697000 42947000 41307000 44023000 37022000 30164000 27707000 26489000 27669000 30104000 9197700 5372500 5796000 45849000 41135000 50602000 15735000 14717000 19575000 1096 1935 1066 21244;21245;21246;21247;21248;21249;21250;21251;21252;21253;21254;21255;21256;21257;21258;21259;21260;21261;21262;21263;21264;21265;21266;21267;21268;21269;21270;21271;21272;21273;21274;21275;21276;21277;21278;21279;21280;21281;21282;21283;21284 12991;12992;12993;12994;12995;12996;12997;12998;12999;13000;13001;13002;13003;13004;13005;13006;13007;13008;13009;13010;13011;13012;13013;13014;13015;13016 13013 26 AIIGVMVESHLVEGNQSLESGEPLAYGK Unmodified 2926.4746 0.47462326 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.802 45.261 3 3.6346E-11 22033 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 125.11 123.13 447340000 66787000 58077000 49130000 4098900 4776000 4043200 25622000 27702000 25379000 3315600 3799000 3979700 24845000 24037000 20785000 0 0 0 36488000 27762000 31949000 0 0 4765500 1097 639 1067 21285;21286;21287;21288;21289;21290;21291;21292;21293;21294;21295;21296;21297;21298;21299;21300;21301;21302;21303 13017;13018;13019;13020;13021;13022;13023;13024;13025;13026;13027;13028;13029;13030;13031 13021 15 AIINDILAGMLDAGHAK Unmodified 1721.9134 0.91344018 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.419 52.987 3 1.2131E-10 25185 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.69 101.77 888010000 90276000 97497000 92314000 1712200 2073900 0 53419000 50588000 50832000 0 0 0 73464000 75562000 77613000 0 0 0 76236000 74071000 69304000 3046000 0 0 1098 1192 1068 21304;21305;21306;21307;21308;21309;21310;21311;21312;21313;21314;21315;21316;21317;21318 13032;13033;13034;13035;13036;13037;13038;13039;13040;13041;13042;13043 13041 12 AIIPVAEEVGVR Unmodified 1251.7187 0.71868677 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.815 35.152 2 1.6938E-06 17289 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.79 144.05 1188900000 190970000 163270000 156740000 302470 0 530580 81401000 88499000 87758000 0 0 0 76900000 69529000 64207000 0 0 0 74761000 68661000 65422000 0 0 0 1099 1244 1069 21319;21320;21321;21322;21323;21324;21325;21326;21327;21328;21329;21330;21331;21332 13044;13045;13046;13047;13048;13049;13050;13051;13052;13053;13054;13055 13045 12 AIIPVHYAGAPADIDAIR Unmodified 1862.005 0.0050323835 1927 P77690 arnB UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.133 36.296 3 1.3351E-06 14689 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.957 82.299 123540000 11224000 9994700 12950000 4196000 4073000 4112900 9520000 0 12612000 15260000 9700000 9287500 4349800 0 3709300 0 0 0 4523800 4292600 3731900 0 0 0 1100 1927 1070 21333;21334;21335;21336;21337;21338;21339;21340;21341;21342;21343;21344;21345;21346;21347;21348 13056;13057;13058;13059 13056 4 AIISDVNASDEDR Unmodified 1403.6529 0.65285163 988 P0AG59 rpsN 30S ribosomal protein S14 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 21.584 21.628 2 3.772E-31 8406 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 251.56 246.46 2542100000 377540000 391690000 306370000 1500900 1361400 1209700 98463000 94204000 96097000 0 4309100 2684800 191650000 165730000 154480000 1152800 1275700 1191300 216620000 226120000 208440000 0 0 0 1101 988 1071 21349;21350;21351;21352;21353;21354;21355;21356;21357;21358;21359;21360;21361;21362;21363;21364;21365;21366;21367;21368;21369;21370;21371 13060;13061;13062;13063;13064;13065;13066;13067;13068;13069;13070 13066 11 AIISDVNASDEDRWNAVLK Unmodified 2115.0596 0.059646729 988 P0AG59 rpsN 30S ribosomal protein S14 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 38.093 36.477 2;3 2.8876E-55 17604 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 312.25 306.74 5689700000 703820000 657850000 623030000 40566000 34955000 35500000 231800000 203560000 201860000 117000000 103430000 98015000 314910000 282570000 239670000 72553000 50889000 57785000 479400000 477110000 411000000 89457000 79167000 83801000 1102 988 1072 21372;21373;21374;21375;21376;21377;21378;21379;21380;21381;21382;21383;21384;21385;21386;21387;21388;21389;21390;21391;21392;21393;21394;21395;21396;21397;21398;21399;21400;21401;21402;21403;21404;21405;21406;21407;21408;21409;21410;21411;21412;21413;21414;21415;21416;21417;21418;21419 13071;13072;13073;13074;13075;13076;13077;13078;13079;13080;13081;13082;13083;13084;13085;13086;13087;13088;13089;13090;13091;13092;13093;13094;13095;13096;13097;13098;13099;13100;13101;13102;13103;13104;13105;13106 13101 35 AIISSGGNVDSLVK Unmodified 1358.7405 0.74054442 1204 P23173 tnaB Low affinity tryptophan permease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.676 29.089 2 7.1568E-08 13482 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.12 140.59 194340000 36760000 35777000 28177000 8646500 7148700 8405100 6839400 5990600 7485800 3185100 2339200 2016500 5123800 6087800 4758500 0 0 0 6519600 8816000 7232800 1891300 0 1135500 1103 1204 1073 21420;21421;21422;21423;21424;21425;21426;21427;21428;21429;21430;21431;21432;21433;21434;21435;21436;21437;21438;21439 13107;13108;13109 13109 3 AIIVLNPAEPPLMMR Unmodified 1663.9154 0.91535444 1918 P77580 mhpF Acetaldehyde dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 51.628 50.419 2 0.042937 23603 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 48.44 44.267 26551000 5380100 6033300 4379600 0 0 0 0 0 1540000 0 0 0 0 1643600 2465600 0 0 0 2599300 0 2509200 0 0 0 1104 1918 1074 21440;21441;21442;21443;21444;21445;21446;21447 13110 13110 0 AIKPVYDVFK Unmodified 1178.6699 0.66994566 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 1 28.485 27.224 2;3 0.00090617 12511 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.431 70.176 27894000000 333730000 313690000 304960000 3022800 6337500 4890900 2267800000 2413000000 2394900000 0 769460 0 2293400000 2092100000 2172400000 4590200 4932600 4456400 4324700000 4436200000 4504100000 5560700 5180900 3362400 1105 993 1075 21448;21449;21450;21451;21452;21453;21454;21455;21456;21457;21458;21459;21460;21461;21462;21463;21464;21465;21466;21467;21468;21469;21470;21471;21472;21473;21474;21475;21476;21477;21478;21479;21480;21481;21482;21483;21484;21485 13111;13112;13113;13114;13115;13116;13117;13118;13119;13120;13121;13122;13123;13124;13125;13126;13127;13128;13129;13130;13131;13132;13133;13134;13135;13136;13137;13138;13139;13140;13141;13142;13143;13144;13145;13146;13147;13148 13135 38 AILAAAGIAEDVK Unmodified 1240.7027 0.70270235 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 2 2 2 1 2 2 2 3 3 3 3 2 2 2 3 3 2 2 2 2 35.314 33.805 2;3 3.3163E-06 11141 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 130.98 73.023 6574100000 983730000 999970000 785000000 19792000 25223000 26722000 308250000 265650000 267960000 58198000 59123000 56926000 337220000 347870000 295530000 39963000 29222000 28956000 537580000 528250000 488850000 28038000 30874000 25234000 1106 368 1076 21486;21487;21488;21489;21490;21491;21492;21493;21494;21495;21496;21497;21498;21499;21500;21501;21502;21503;21504;21505;21506;21507;21508;21509;21510;21511;21512;21513;21514;21515;21516;21517;21518;21519;21520;21521;21522;21523;21524;21525;21526;21527;21528;21529;21530;21531;21532;21533;21534;21535;21536;21537;21538;21539;21540;21541;21542 13149;13150;13151;13152;13153;13154;13155;13156;13157;13158;13159;13160;13161;13162;13163;13164;13165;13166;13167;13168;13169;13170;13171;13172;13173;13174;13175;13176;13177;13178;13179;13180;13181;13182;13183;13184;13185;13186;13187;13188;13189;13190;13191;13192;13193;13194;13195;13196;13197;13198 13150 45 AILAAAGIAEDVKISELSEGQIDTLRDEVAK Unmodified 3224.714 0.71400191 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 50.338 48.9 4 1.3006E-17 17600 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 138.71 138.1 53521000 0 0 0 5273900 6061400 5733000 0 0 0 5386900 8712000 7394600 0 0 0 0 0 0 0 0 0 5706200 5408800 3844300 1107 368 1077 21543;21544;21545;21546;21547;21548;21549;21550;21551 13199;13200;13201;13202;13203;13204 13202 6 AILDSEDDAELAHH Unmodified 1534.69 0.68996541 1913 P77529 ydjN Uncharacterized symporter YdjN yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 23.649 22.833 2;3 2.1856E-14 9498 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 187 187 1460500000 55679000 58379000 5892000 14305000 15147000 15005000 120790000 108830000 90884000 73730000 58087000 56124000 117010000 124390000 25998000 9404400 10448000 9329400 121250000 156980000 130650000 33396000 25456000 23286000 1108 1913 1078 21552;21553;21554;21555;21556;21557;21558;21559;21560;21561;21562;21563;21564;21565;21566;21567;21568;21569;21570;21571;21572;21573;21574;21575;21576;21577;21578;21579;21580;21581;21582;21583;21584;21585;21586;21587;21588;21589;21590;21591;21592;21593;21594;21595 13205;13206;13207;13208;13209;13210;13211;13212;13213;13214;13215;13216;13217;13218;13219;13220;13221;13222;13223;13224;13225;13226;13227;13228;13229;13230;13231;13232;13233;13234;13235;13236;13237 13234 32 AILGGLIASGQVLPGQIWVYTPSPDK Unmodified 2679.4636 0.46358829 535 P0A9L8 proC Pyrroline-5-carboxylate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 1 2 2 2 2 55.103 53.624 2;3 1.5354E-22 26741 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.28 174.55 708870000 123310000 110940000 99162000 0 0 0 42547000 40713000 45486000 0 0 0 40186000 27857000 34897000 0 0 0 50085000 47377000 46312000 0 0 0 1109 535 1079 21596;21597;21598;21599;21600;21601;21602;21603;21604;21605;21606;21607;21608;21609;21610;21611;21612;21613;21614;21615;21616;21617;21618 13238;13239;13240;13241 13239 4 AILGLGTDIVEIAR Unmodified 1439.8348 0.83477916 1245 P24224 acpS Holo-[acyl-carrier-protein] synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.344 50.096 2 0.00018973 23445 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 99.522 98.195 118650000 11454000 9727000 14498000 0 0 0 6819400 8072800 6685000 0 0 0 8890400 10474000 10024000 0 0 0 11313000 10185000 10511000 0 0 0 1110 1245 1080 21619;21620;21621;21622;21623;21624;21625;21626;21627;21628;21629;21630 13242;13243;13244 13244 1 AILGSMER Unmodified 875.45349 0.4534873 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 20.336 20.551 2 0.00043484 8312 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.28 121.72 2855600000 209580000 187170000 158320000 2731400 0 2438300 249620000 282960000 243210000 3584100 3064900 2586800 265240000 207020000 222450000 0 0 0 281220000 258250000 273550000 2577400 0 0 1111 445 1081 21631;21632;21633;21634;21635;21636;21637;21638;21639;21640;21641;21642;21643;21644;21645;21646;21647;21648;21649 13245;13246;13247;13248;13249;13250;13251;13252;13253;13254;13255;13256 13248 12 AILLIVR Unmodified 796.55346 0.55345934 687 P0ABZ1 fliG Flagellar motor switch protein FliG yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 36.428 34.914 2 0.0058251 16599 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.03 85.873 18729000 4522400 0 4773100 3038000 3074100 3321100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1112 687 1082 21650;21651;21652;21653;21654 13257;13258;13259;13260 13260 4 AILPAQYR Unmodified 930.5287 0.52870115 32 P00547 thrB Homoserine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.596 22.045 2 0.00046555 9486 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.5 121.35 434720000 52965000 63857000 56128000 0 0 0 18501000 19210000 17322000 0 0 0 23779000 22754000 26307000 0 0 0 45083000 43376000 45444000 0 0 0 1113 32 1083 21655;21656;21657;21658;21659;21660;21661;21662;21663;21664;21665;21666 13261;13262;13263;13264;13265;13266;13267;13268;13269 13261 9 AILVESGQPVEFDEPLVVIE Unmodified 2182.1409 0.14091674 652 P0ABD8 accB Biotin carboxyl carrier protein of acetyl-CoA carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.771 54.308 2 7.9236E-18 26783 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 161.48 156.59 945820000 44417000 56157000 61637000 0 0 0 65409000 46965000 53042000 4583500 5673400 5087000 91336000 91774000 90836000 0 0 0 123100000 95950000 100220000 0 9634500 0 1114 652 1084 21667;21668;21669;21670;21671;21672;21673;21674;21675;21676;21677;21678;21679;21680;21681;21682 13270;13271;13272;13273;13274;13275;13276;13277;13278;13279;13280;13281 13274 12 AILWMIVPK Oxidation (M) 1085.6307 0.63072338 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 7 7 8 1 1 10 8 8 1 9 9 10 47.357 46.184 1;2 0.00097675 16884 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 84.244 70.248 1854700000 1218000 0 0 394650 0 0 0 0 0 163710000 150990000 121780000 1555300 0 913390 406690000 269250000 301270000 1951500 0 0 146550000 140510000 147920000 1115 458 1085 21683;21684;21685;21686;21687;21688;21689;21690;21691;21692;21693;21694;21695;21696;21697;21698;21699;21700;21701;21702;21703;21704;21705;21706;21707;21708;21709;21710;21711;21712;21713;21714;21715;21716;21717;21718;21719;21720;21721;21722;21723;21724;21725;21726;21727;21728;21729;21730;21731;21732;21733;21734;21735;21736;21737;21738;21739;21740;21741;21742;21743;21744;21745;21746;21747;21748;21749;21750;21751;21752;21753;21754;21755;21756;21757;21758;21759;21760;21761;21762;21763 13282;13283;13284;13285;13286;13287;13288;13289;13290;13291;13292;13293;13294;13295;13296;13297;13298;13299;13300;13301;13302;13303;13304;13305;13306;13307;13308;13309;13310;13311;13312;13313;13314;13315;13316;13317;13318;13319;13320;13321;13322;13323;13324;13325;13326;13327;13328;13329;13330;13331;13332;13333;13334;13335;13336;13337;13338;13339;13340;13341;13342;13343;13344;13345;13346;13347;13348;13349;13350;13351;13352;13353;13354;13355;13356;13357;13358;13359;13360;13361;13362;13363 13292 220 75 AILWMIVPK Unmodified 1069.6358 0.63580876 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 7 7 8 1 1 1 1 2 1 50.92 50.257 2;3 0.00041345 18819 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 85.064 76.532 42144000000 80539000 87787000 80473000 12125000 19367000 19099000 81791000 0 0 3212200000 3646900000 2476500000 73014000 0 64560000 8955500000 8259100000 7660500000 142710000 0 133990000 2181300000 2225800000 2730600000 1116 458 1085 21764;21765;21766;21767;21768;21769;21770;21771;21772;21773;21774;21775;21776;21777;21778;21779;21780;21781;21782;21783;21784;21785;21786;21787;21788;21789;21790;21791;21792;21793;21794;21795;21796;21797;21798;21799;21800;21801;21802;21803;21804;21805;21806;21807;21808;21809;21810 13364;13365;13366;13367;13368;13369;13370;13371;13372;13373;13374;13375;13376;13377;13378;13379;13380;13381;13382;13383;13384;13385;13386;13387;13388;13389;13390;13391;13392;13393;13394;13395;13396;13397;13398;13399;13400;13401;13402;13403;13404;13405;13406;13407;13408;13409;13410;13411;13412;13413;13414;13415;13416;13417;13418;13419;13420;13421;13422;13423;13424;13425 13366 62 AILYGDK Unmodified 778.4225 0.42250475 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 16.263 17.084 2 0.12646 6104 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 49.058 26.322 31252000 10815000 0 0 0 0 0 0 15254000 0 0 0 0 0 5183000 0 0 0 0 0 0 0 0 0 0 1117 426 1086 21811;21812;21813 13426 13426 1 AIMASDLGLNPNSAGSDIR Unmodified 1900.9313 0.93127509 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 38.56 36.83 2;3 3.8715E-45 17106 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 321.86 317.99 6343300000 564410000 465730000 479950000 1046000 759200 1273000 557690000 525290000 525760000 0 775970 938660 475740000 471420000 413060000 0 0 0 664620000 635420000 559440000 0 0 0 1118 385 1087 21814;21815;21816;21817;21818;21819;21820;21821;21822;21823;21824;21825;21826;21827;21828;21829;21830;21831;21832;21833;21834;21835;21836;21837;21838;21839;21840;21841;21842 13427;13428;13429;13430;13431;13432;13433;13434;13435;13436;13437;13438;13439;13440;13441;13442;13443;13444;13445;13446;13447;13448;13449;13450 13447 23 AIMASDLGLNPNSAGSDIR Oxidation (M) 1916.9262 0.92618972 385 P0A805 frr Ribosome-recycling factor yes yes 0 1 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 35.018 33.763 2 4.7143E-10 15909 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 130.61 125.23 33155000 8461800 6663200 6461500 0 0 0 0 0 0 0 0 0 5567400 6000600 0 0 0 0 0 0 0 0 0 0 1119 385 1087 21843;21844;21845;21846;21847 13451 13451 171 1 AIMNQTR Oxidation (M) 848.41744 0.41743614 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 10.697 10.619 2 0.013665 1946 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 86.512 60.686 148640000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61273000 43971000 43392000 0 0 0 0 0 0 1120 1089 1088 21848;21849;21850 13452;13453;13454 13452 489 2 AIMNQTR Unmodified 832.42252 0.42252152 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.719 12.179 2 0.0015294 2587 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 128.38 76.81 3661800000 0 6511800 0 0 0 0 43591000 0 50625000 17626000 15177000 19256000 21468000 0 26034000 1120200000 1233400000 1096700000 0 11140000 0 0 0 0 1121 1089 1088 21851;21852;21853;21854;21855;21856;21857;21858;21859;21860;21861;21862 13455;13456;13457;13458;13459;13460 13456 6 AIMVAHNANFDHSFMMAAAER Unmodified 2333.0504 0.050361146 1335 P30014 rnt Ribonuclease T yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 33.416 32.184 3 0.15732 14620 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 15.241 14.881 32374000 0 7286900 8525200 0 0 0 0 0 0 0 0 0 5130600 4697600 6733200 0 0 0 0 0 0 0 0 0 1122 1335 1089 21863;21864;21865;21866;21867 13461 13461 1 AIMVCDEPSTMELK Unmodified 1622.7354 0.73540074 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.025 32.576 2 1.3282E-11 15371 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 177.57 175.74 1338100000 185560000 176540000 149820000 0 0 0 124910000 122270000 118070000 0 0 0 74007000 68246000 60448000 0 0 0 81638000 89206000 87396000 0 0 0 1123 313 1090 21868;21869;21870;21871;21872;21873;21874;21875;21876;21877;21878;21879 13462;13463;13464;13465;13466;13467;13468;13469;13470;13471;13472;13473 13467 12 AIMVCDEPSTMELK Oxidation (M) 1638.7303 0.73031537 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 31.016 29.562 2 3.8285E-06 13986 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 106.29 104.7 39223000 6868300 6602200 5636600 0 0 0 5407700 3672000 4964400 0 0 0 0 0 0 0 0 0 2741800 3330300 0 0 0 0 1124 313 1090 21880;21881;21882;21883;21884;21885;21886;21887 13474;13475 13474 141 1 AINALANPTTNSYK Unmodified 1476.7573 0.75725712 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.866 22.984 2 8.4354E-15 9788 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 196.88 191.27 3330600000 517760000 436340000 383850000 945210 695040 978100 213340000 236360000 237640000 0 0 1244500 168340000 182160000 196640000 916430 0 0 223630000 244400000 280960000 1199100 1645400 1535300 1125 508 1091 21888;21889;21890;21891;21892;21893;21894;21895;21896;21897;21898;21899;21900;21901;21902;21903;21904;21905;21906;21907 13476;13477;13478;13479;13480;13481;13482;13483;13484;13485;13486;13487 13484 12 AINASLQR Unmodified 871.48756 0.48756462 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 1 2 2 2 1 1 13.547 14.415 2 0.0012251 4568 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.63 54.511 743140000 70225000 83877000 53171000 0 0 0 35306000 51840000 43681000 0 0 0 59626000 60288000 59683000 0 0 0 75599000 80889000 68956000 0 0 0 1126 181 1092 21908;21909;21910;21911;21912;21913;21914;21915;21916;21917;21918;21919;21920;21921;21922;21923;21924;21925 13488;13489;13490;13491;13492;13493;13494;13495;13496;13497 13496 1 AINATLSK Unmodified 816.47052 0.47051757 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.241 14.107 2 0.01678 4427 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.981 35.867 381610000 25005000 23616000 24239000 0 0 0 42509000 40746000 34532000 0 0 0 29142000 29046000 19979000 0 0 0 40660000 38961000 33176000 0 0 0 1127 1586 1093 21926;21927;21928;21929;21930;21931;21932;21933;21934;21935;21936;21937 13498;13499;13500;13501;13502 13498 3 AINEDAAGNYIHYGVR Unmodified 1761.8434 0.84344636 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 27.336 26.183 2;3 7.2493E-24 11312 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 224.24 221.72 9869000000 615150000 609620000 551790000 0 0 1858200 1088200000 1029300000 975270000 0 0 0 730970000 708890000 656270000 0 0 0 1020400000 989730000 891560000 0 0 0 1128 1299 1094 21938;21939;21940;21941;21942;21943;21944;21945;21946;21947;21948;21949;21950;21951;21952;21953;21954;21955;21956;21957;21958;21959;21960;21961;21962 13503;13504;13505;13506;13507;13508;13509;13510;13511;13512;13513;13514;13515;13516;13517;13518;13519;13520;13521;13522;13523;13524;13525;13526 13526 24 AINEQPLNLGQGIWLSDSAEGNLR Unmodified 2594.3089 0.30887856 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 52.212 50.875 3 0.000482 18455 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 65.425 62.459 168610000 11132000 0 0 0 5766500 0 21641000 12646000 15502000 3906600 3286400 0 0 0 24194000 0 0 0 23176000 23145000 24214000 0 0 0 1129 1748 1095 21963;21964;21965;21966;21967;21968;21969;21970;21971;21972;21973 13527 13527 1 AINMMSR Unmodified 821.38878 0.38877855 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS 1 1 15.927 16.906 2 0.0043352 5873 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 97.602 87.852 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1130 1609 1096 21974;21975 13528;13529 13528 2 AINVSDQVPAK Unmodified 1140.6139 0.61388734 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.117 18.732 2 0.00020232 6979 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.2 80.772 831410000 205790000 193950000 164290000 0 0 0 28877000 19864000 19528000 0 0 0 38330000 32868000 29894000 0 0 0 36302000 29921000 31799000 0 0 0 1131 529 1097 21976;21977;21978;21979;21980;21981;21982;21983;21984;21985;21986;21987 13530;13531;13532;13533;13534;13535;13536 13533 7 AINYGYTDDR Unmodified 1186.5255 0.52546627 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.301 18.916 2 0.00025665 7277 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.05 110.3 178830000 28449000 24341000 23364000 0 0 473890 29664000 30570000 22481000 0 0 0 2909900 3129600 6071000 0 0 0 3084700 0 4291800 0 0 0 1132 498 1098 21988;21989;21990;21991;21992;21993;21994;21995;21996;21997;21998;21999 13537;13538 13537 2 AIPAFGLGTFR Unmodified 1148.6342 0.63422886 1351 P30863 dkgB 2,5-diketo-D-gluconic acid reductase B yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.948 43.75 2 0.00027037 21371 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 120.87 108.51 248390000 34233000 32339000 25972000 0 0 0 19715000 18457000 17288000 0 0 0 11947000 11175000 8692000 13608000 0 12878000 15705000 12961000 13424000 0 0 0 1133 1351 1099 22000;22001;22002;22003;22004;22005;22006;22007;22008;22009;22010;22011;22012;22013 13539;13540;13541;13542;13543;13544 13542 4 AIPEGAVDNGQLR Unmodified 1338.6892 0.68917755 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 22.047 22.048 2 2.6834E-05 8974 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.98 101.86 73059000 18347000 13238000 15619000 0 0 0 7079400 6719900 6266100 0 0 0 0 0 1855500 0 0 0 0 0 3933800 0 0 0 1134 119 1100 22014;22015;22016;22017;22018;22019;22020;22021 13545;13546;13547;13548 13547 3 AIPGTIR Unmodified 726.43882 0.43882351 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.274 16.082 2 0.0021402 5406 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 117.56 60.109 689670000 133480000 171540000 161890000 0 0 0 33066000 31902000 29599000 0 0 0 16892000 16500000 17751000 0 0 0 29090000 23611000 24357000 0 0 0 1135 555 1101 22022;22023;22024;22025;22026;22027;22028;22029;22030;22031;22032;22033 13549;13550;13551;13552;13553;13554;13555;13556;13557 13554 9 AIPNYNVMGLAK Oxidation (M) 1305.6751 0.67510739 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 1 1 2 2 2 1 29.299 28.016 2 0.0011889 13256 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.334 69.152 173380000 9119700 8243500 12452000 0 0 0 20564000 25237000 17479000 0 0 0 6630700 10798000 6754900 0 0 3991100 16965000 16326000 17385000 0 1438900 0 1136 869 1102 22034;22035;22036;22037;22038;22039;22040;22041;22042;22043;22044;22045;22046;22047;22048;22049;22050;22051;22052;22053;22054;22055;22056;22057 13558;13559;13560;13561;13562;13563;13564;13565;13566;13567;13568;13569;13570;13571 13558 398 4 AIPNYNVMGLAK Unmodified 1289.6802 0.68019277 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.785 35.083 2 5.1322E-05 16937 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.47 101.26 5172500000 434200000 422060000 396860000 2271500 3108000 2545500 469610000 475660000 461290000 0 0 0 355520000 396910000 390770000 0 0 0 463420000 451450000 440790000 2177000 1842600 1973800 1137 869 1102 22058;22059;22060;22061;22062;22063;22064;22065;22066;22067;22068;22069;22070;22071;22072;22073;22074;22075 13572;13573;13574;13575;13576;13577;13578;13579;13580;13581;13582 13576 8 AIPWIFAWTQNR Unmodified 1501.783 0.78301836 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.963 53.501 2 0.07063 26654 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 51.436 45.333 189910000 25130000 0 21774000 0 0 0 17594000 0 18165000 0 0 0 16785000 14629000 13034000 0 0 0 22122000 16673000 24003000 0 0 0 1138 43 1103 22076;22077;22078;22079;22080;22081;22082;22083;22084;22085 13583;13584 13583 0 AIQAALDELQK Unmodified 1198.6558 0.65575216 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.182 28.743 2 8.7283E-05 9789 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 122.28 89.44 311980000 13772000 12392000 10462000 2898100 2658300 2576400 21711000 19245000 22344000 8477300 8657000 8644900 24444000 22984000 20979000 0 2042700 2694000 31511000 31378000 24567000 5033100 5191500 7321500 1139 1631 1104 22086;22087;22088;22089;22090;22091;22092;22093;22094;22095;22096;22097;22098;22099;22100;22101;22102;22103;22104;22105;22106;22107;22108 13585;13586;13587;13588;13589 13585 5 AIQEAEAYPGPSLIIAYSPCEEHGYDLALSHDQMR Unmodified 3930.8193 0.81928839 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.635 46.237 4 3.9796E-15 22471 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 133.46 133.1 315060000 35653000 28064000 28176000 0 0 0 28297000 22961000 26067000 0 0 0 25517000 21920000 19582000 0 0 0 27616000 24551000 26656000 0 0 0 1140 1609 1105 22109;22110;22111;22112;22113;22114;22115;22116;22117;22118;22119;22120 13590;13591;13592;13593;13594;13595;13596 13594 7 AIQHIFNR Unmodified 997.54575 0.5457482 1208 P23522 garL 5-keto-4-deoxy-D-glucarate aldolase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 14.973 15.807 2 0.002417 5474 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.67 96.558 75221000 11917000 13067000 0 0 0 0 0 0 0 0 0 0 15421000 17657000 17159000 0 0 0 0 0 0 0 0 0 1141 1208 1106 22121;22122;22123;22124;22125 13597;13598 13597 2 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR Oxidation (M) 3991.9561 0.95605664 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 1 3 4 4 4 2 50.503 49.495 3;4;5 3.1718E-37 19546 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 186.23 181.96 1192600000 0 0 0 0 0 2443400 0 0 0 179810000 171040000 113870000 0 2785400 0 136370000 0 224210000 0 0 0 167260000 173380000 21409000 1142 458 1107 22126;22127;22128;22129;22130;22131;22132;22133;22134;22135;22136;22137;22138;22139;22140;22141;22142;22143;22144;22145;22146;22147;22148;22149;22150;22151 13599;13600;13601;13602;13603;13604;13605;13606;13607;13608;13609;13610;13611;13612;13613;13614;13615;13616;13617;13618;13619;13620;13621;13622 13620 221 24 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR Unmodified 3975.9611 0.96114202 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1 2 1 2 1 7 9 6 2 3 3 13 13 13 3 4 3 8 6 8 53.783 52.892 3;4;5;6 3.1072E-72 20535 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 255.95 254.72 26191000000 25103000 18132000 6039100 15135000 15095000 18121000 10379000 102710000 6943000 2429800000 2046900000 2335100000 75363000 73903000 75333000 3988600000 4012300000 4358800000 100880000 88029000 100400000 1745100000 2010200000 2532900000 1143 458 1107 22152;22153;22154;22155;22156;22157;22158;22159;22160;22161;22162;22163;22164;22165;22166;22167;22168;22169;22170;22171;22172;22173;22174;22175;22176;22177;22178;22179;22180;22181;22182;22183;22184;22185;22186;22187;22188;22189;22190;22191;22192;22193;22194;22195;22196;22197;22198;22199;22200;22201;22202;22203;22204;22205;22206;22207;22208;22209;22210;22211;22212;22213;22214;22215;22216;22217;22218;22219;22220;22221;22222;22223;22224;22225;22226;22227;22228;22229;22230;22231;22232;22233;22234;22235;22236;22237;22238;22239;22240;22241;22242;22243;22244;22245;22246;22247;22248;22249;22250;22251;22252;22253;22254;22255;22256;22257;22258;22259;22260;22261;22262;22263;22264;22265;22266;22267 13623;13624;13625;13626;13627;13628;13629;13630;13631;13632;13633;13634;13635;13636;13637;13638;13639;13640;13641;13642;13643;13644;13645;13646;13647;13648;13649;13650;13651;13652;13653;13654;13655;13656;13657;13658;13659;13660;13661;13662;13663;13664;13665;13666;13667;13668;13669;13670;13671;13672;13673;13674;13675;13676;13677;13678;13679;13680;13681;13682;13683;13684;13685;13686;13687;13688;13689;13690;13691;13692;13693;13694;13695;13696;13697;13698;13699;13700;13701;13702;13703;13704;13705;13706;13707;13708;13709;13710;13711;13712;13713;13714;13715;13716;13717;13718;13719;13720;13721;13722;13723;13724;13725;13726;13727;13728;13729;13730;13731;13732;13733;13734;13735;13736;13737;13738;13739;13740;13741;13742;13743;13744;13745;13746;13747;13748;13749;13750;13751;13752 13708 128 AIQQQIENPLAQQILSGELVPGK Unmodified 2473.354 0.35403784 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 53.497 52.198 2;3 3.6182E-35 25520 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 277 272.46 2090500000 249860000 221500000 215170000 4035800 4032700 2721800 232010000 220820000 202020000 5548500 5367900 8673500 124930000 95295000 92637000 2370400 2844700 2896100 142480000 136290000 119030000 0 0 0 1144 1662 1108 22268;22269;22270;22271;22272;22273;22274;22275;22276;22277;22278;22279;22280;22281;22282;22283;22284;22285;22286;22287;22288;22289;22290;22291;22292;22293;22294;22295;22296;22297;22298;22299;22300;22301 13753;13754;13755;13756;13757;13758;13759;13760;13761;13762;13763;13764;13765;13766;13767;13768;13769;13770;13771;13772;13773 13760 21 AIQVLCR Unmodified 858.47456 0.47455709 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 19.194 19.708 2 0.0016613 6379 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 126.05 97.939 147910000 28403000 27258000 23182000 0 0 0 0 0 19802000 10164000 0 0 8370200 10751000 7656300 0 0 0 0 12324000 0 0 0 0 1145 658 1109 22302;22303;22304;22305;22306;22307;22308;22309;22310 13774;13775;13776;13777;13778 13774 1 AIQVTTGAK Unmodified 887.50763 0.50763136 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.695 13.301 2 0.00050745 3147 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 108.46 37.548 4685300000 527480000 528170000 538570000 53222000 51024000 41106000 210980000 198500000 224960000 93171000 71258000 61985000 242420000 230690000 247730000 32023000 33646000 34065000 398150000 357660000 335340000 59344000 53810000 59971000 1146 1621 1110 22311;22312;22313;22314;22315;22316;22317;22318;22319;22320;22321;22322;22323;22324;22325;22326;22327;22328;22329;22330;22331;22332;22333;22334 13779;13780;13781;13782;13783;13784;13785;13786;13787;13788;13789;13790;13791;13792;13793;13794;13795 13784 17 AIQYNQAIAALNR Unmodified 1444.7787 0.77866126 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.162 32.697 2 2.6713E-24 15417 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 243.38 225.87 495330000 30966000 34377000 26533000 2107700 2135500 2793500 38089000 39228000 30542000 8815600 8488300 7565400 29440000 28243000 28618000 4487300 1795300 2090000 46111000 53707000 46916000 7390100 8955900 5936400 1147 1197 1111 22335;22336;22337;22338;22339;22340;22341;22342;22343;22344;22345;22346;22347;22348;22349;22350;22351;22352;22353;22354;22355;22356;22357;22358 13796;13797;13798;13799;13800;13801;13802;13803;13804;13805;13806;13807;13808;13809;13810;13811;13812;13813;13814;13815 13812 19 AISDVADQQSHLSFDEFLAVAAK Unmodified 2461.2125 0.21251856 903 P0AF12 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 2 1 1 1 1 51.096 49.813 2;3 1.12E-75 24506 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 308.12 291.18 736940000 23889000 18789000 173350000 1276300 1147300 1002000 20495000 211560000 226280000 0 0 0 11535000 14857000 15028000 0 0 0 0 17727000 0 0 0 0 1148 903 1112 22359;22360;22361;22362;22363;22364;22365;22366;22367;22368;22369;22370;22371;22372;22373;22374 13816;13817;13818;13819;13820;13821;13822;13823;13824;13825;13826 13818 11 AISIAPDFDYALVQIDGQAVILAK Unmodified 2530.3683 0.36829092 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 55.285 53.819 2;3 8.6255E-15 26414 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 139.65 138.78 452640000 54724000 44463000 37877000 3122200 0 0 29513000 32068000 30883000 0 0 0 30081000 25317000 30115000 0 0 0 46214000 51913000 36348000 0 0 0 1149 58 1113 22375;22376;22377;22378;22379;22380;22381;22382;22383;22384;22385;22386;22387;22388;22389;22390;22391;22392;22393;22394;22395;22396;22397;22398;22399 13827;13828;13829;13830;13831;13832;13833;13834;13835 13830 5 AISIVDR Unmodified 772.4443 0.44430282 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 18.765 19.235 2 0.12118 5305 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 50.025 21.496 59733000 0 18421000 0 0 2377200 0 30073000 8861400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1150 326 1114 22400;22401;22402;22403 13836;13837;13838 13837 3 AISLEEKPK Unmodified 1013.5757 0.57571092 1641 P61887 rmlA2 Glucose-1-phosphate thymidylyltransferase 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.586 13.418 2 0.049112 3726 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 60.478 34.306 103150000 6885000 7940700 5594100 0 0 0 9948700 9540700 6012400 0 0 0 8744200 6631200 9064000 0 0 0 11971000 9847200 10971000 0 0 0 1151 1641 1115 22404;22405;22406;22407;22408;22409;22410;22411;22412;22413;22414;22415 13839 13839 1 AISLSGEAQSGR Unmodified 1174.5942 0.59421454 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.961 17.451 2 9.8402E-17 6276 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 206.43 180.62 853250000 17247000 18332000 14925000 2616400 3164100 3053100 86429000 84719000 79237000 138320000 97763000 57892000 26383000 28468000 31478000 5329900 3029800 3322200 46479000 50727000 42428000 5723300 3531200 2655000 1152 1944 1116 22416;22417;22418;22419;22420;22421;22422;22423;22424;22425;22426;22427;22428;22429;22430;22431;22432;22433;22434;22435;22436;22437;22438;22439 13840;13841;13842;13843;13844;13845;13846;13847;13848;13849;13850;13851;13852;13853;13854;13855;13856;13857;13858;13859 13848 20 AISLSVR Unmodified 744.44939 0.4493882 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 21.019 21.133 1;2 0.00066144 7123 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 148.21 85.868 8955600000 913430000 846180000 705480000 7395000 8527400 9027800 622530000 577390000 600450000 81781000 110960000 92900000 593180000 617160000 554300000 111200000 107870000 117460000 734750000 725750000 673910000 12493000 66863000 64656000 1153 990 1117 22440;22441;22442;22443;22444;22445;22446;22447;22448;22449;22450;22451;22452;22453;22454;22455;22456;22457;22458;22459;22460;22461;22462;22463;22464;22465;22466;22467;22468;22469;22470;22471;22472;22473;22474;22475;22476;22477;22478;22479;22480;22481;22482;22483 13860;13861;13862;13863;13864;13865;13866;13867;13868;13869;13870;13871;13872;13873;13874;13875;13876;13877;13878 13863 19 AISLVEETRPLLPGVR Unmodified 1749.0149 0.014868788 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 40.38 38.711 2;3 1.0239E-10 19363 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.53 110.8 1238200000 91752000 87281000 70790000 0 486560 0 112270000 102650000 100340000 0 0 0 97423000 107130000 92934000 0 0 0 130120000 132810000 112190000 0 0 0 1154 1889 1118 22484;22485;22486;22487;22488;22489;22490;22491;22492;22493;22494;22495;22496;22497;22498;22499;22500;22501;22502;22503;22504;22505;22506;22507;22508 13879;13880;13881;13882;13883;13884;13885;13886;13887;13888;13889;13890;13891;13892;13893;13894 13879 16 AISSSQENASTESK Unmodified 1437.6583 0.65833093 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 10.648 11.301 2 3.1968E-06 2676 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.86 114.25 96153000 0 24179000 9763500 0 0 0 12752000 20029000 26004000 0 0 3425900 0 0 0 0 0 0 0 0 0 0 0 0 1155 1477 1119 22509;22510;22511;22512;22513;22514 13895;13896;13897;13898;13899 13897 3 AISSSQENASTESKQ Unmodified 1565.7169 0.71690845 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 10.724 11.512 2 1.207E-06 2260 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 119.76 109.24 8925300 0 0 0 2008900 2057600 0 0 0 0 0 0 4858900 0 0 0 0 0 0 0 0 0 0 0 0 1156 1477 1120 22515;22516;22517 13900 13900 1 AISTIAESK Unmodified 918.50221 0.50221163 1755 P69908 gadA Glutamate decarboxylase alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.374 14.288 2 0.0001886 4413 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 127.56 113.64 8186100000 686150000 668390000 648520000 2369900 2653100 1952600 1961200000 1930700000 1907600000 0 0 0 76563000 74236000 59929000 0 0 0 0 80455000 85353000 0 0 0 1157 1755 1121 22518;22519;22520;22521;22522;22523;22524;22525;22526;22527;22528;22529;22530;22531 13901;13902;13903;13904;13905;13906;13907;13908;13909;13910;13911 13910 10 AISVTER Unmodified 774.42357 0.42356738 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.789 13.372 2 0.007582 3198 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 90.706 65.708 841160000 0 0 0 9245100 9922000 7689900 127980000 0 0 24534000 21823000 25026000 0 81756000 85627000 0 6684100 6704800 140360000 136620000 120260000 12315000 11289000 13317000 1158 61 1122 22532;22533;22534;22535;22536;22537;22538;22539;22540;22541;22542;22543;22544;22545;22546;22547;22548 13912;13913;13914;13915;13916;13917;13918 13912 7 AISYYDYALK Unmodified 1205.5968 0.5968403 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.351 32.432 2 0.029274 12911 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 57.598 46.733 57941000 0 0 0 1538900 0 1488700 11780000 9643900 8838900 3289100 4651700 0 0 0 0 0 0 0 14802000 0 0 0 0 1907100 1159 188 1123 22549;22550;22551;22552;22553;22554;22555;22556;22557 13919;13920 13919 1 AITDVVNIGIGGSDLGPYMVTEALRPYK Unmodified 2948.5317 0.53174421 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.53 53.082 3 9.9587E-42 26348 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 221.26 218.97 2385000000 259140000 249790000 222050000 0 0 0 260380000 227460000 216470000 0 0 0 175770000 142670000 137230000 0 0 0 191700000 154110000 148210000 0 0 0 1160 277 1124 22558;22559;22560;22561;22562;22563;22564;22565;22566;22567;22568;22569 13921;13922;13923;13924;13925;13926;13927;13928;13929;13930;13931;13932 13921 12 AITDYGVTGR Unmodified 1051.5298 0.52982336 403 P0A873 trmD tRNA (guanine-N(1)-)-methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.958 21.283 2 2.976E-05 8487 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.13 118.17 196170000 17255000 17942000 13879000 0 0 0 9679400 9058600 11877000 0 0 0 15222000 14809000 14512000 0 0 0 24738000 26722000 20473000 0 0 0 1161 403 1125 22570;22571;22572;22573;22574;22575;22576;22577;22578;22579;22580;22581 13933;13934;13935;13936;13937;13938;13939;13940 13935 8 AITETTEQLINEPLDHR Unmodified 1978.996 0.99598384 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 2 2 2 2 2 2 2 2 2 2 1 42.231 40.829 3 0.0037556 15378 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 54.974 49.264 566610000 18800000 48793000 43390000 0 0 0 68652000 63441000 59547000 0 0 0 47465000 42222000 40812000 0 0 0 52028000 58244000 23219000 0 0 0 1162 843 1126 22582;22583;22584;22585;22586;22587;22588;22589;22590;22591;22592;22593;22594;22595;22596;22597;22598;22599;22600;22601;22602;22603 13941;13942;13943;13944;13945 13943 5 AITGIFFGSDTGNTENIAK Unmodified 1954.9636 0.96362108 1643 P61949 fldA Flavodoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 44.766 43.246 2;3 2.2829E-22 21416 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 234.82 232.46 1541600000 163860000 132480000 121200000 769550 0 913870 131620000 139680000 128270000 0 0 0 118710000 112230000 109230000 0 0 0 120460000 137280000 124940000 0 0 0 1163 1643 1127 22604;22605;22606;22607;22608;22609;22610;22611;22612;22613;22614;22615;22616;22617;22618;22619;22620;22621;22622;22623;22624;22625;22626;22627;22628;22629 13946;13947;13948;13949;13950;13951;13952;13953;13954;13955;13956;13957;13958;13959;13960;13961;13962;13963;13964;13965;13966;13967;13968 13948 23 AITGSNKR Unmodified 845.47191 0.47191456 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 9.8954 10.058 2 0.0010176 1769 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 122.13 118.27 122520000 0 0 0 0 0 0 0 0 555210 9793800 9893600 8677400 0 0 0 46081000 24818000 22699000 0 0 0 0 0 0 1164 458 1128 22630;22631;22632;22633;22634;22635;22636 13969;13970;13971;13972;13973;13974 13970 6 AITGSNKRPLK Unmodified 1183.7037 0.70370541 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 2 3 3 3 4 3 3 10.152 10.377 1;2;3 2.4657E-08 2044 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 223.93 188.49 20480000000 0 0 0 2190900 4627500 1945600 0 0 0 759360000 796190000 659480000 0 0 0 5513000000 4722800000 4417000000 0 0 0 1342300000 1214200000 1046400000 1165 458 1129 22637;22638;22639;22640;22641;22642;22643;22644;22645;22646;22647;22648;22649;22650;22651;22652;22653;22654;22655;22656;22657;22658;22659;22660;22661;22662;22663;22664;22665 13975;13976;13977;13978;13979;13980;13981;13982;13983;13984;13985;13986;13987;13988;13989;13990;13991;13992;13993;13994;13995;13996 13975 22 AITIDFVR Unmodified 933.52837 0.5283668 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.841 35.171 2 0.00065993 14249 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 128.57 75.883 197820000 16190000 14595000 13895000 3107700 2953200 3551800 11626000 10069000 0 16238000 15954000 14717000 5778100 5309900 0 0 3792900 2196500 11903000 10679000 14651000 6547600 7007400 7055200 1166 78 1130 22666;22667;22668;22669;22670;22671;22672;22673;22674;22675;22676;22677;22678;22679;22680;22681;22682;22683;22684;22685;22686 13997;13998;13999;14000;14001;14002 13997 6 AITIEELAQYPLVTYTFGFTGR Unmodified 2489.2842 0.28422694 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 56.408 55.718 3 2.265E-28 20996 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 193.54 189.68 74666000 0 178040 0 0 0 0 0 74852 0 0 0 0 0 0 0 23852000 24287000 26160000 0 0 113640 0 0 0 1167 515 1131 22687;22688;22689;22690;22691;22692 14003;14004;14005 14004 3 AITLNQPNPQDGVDVLAK Unmodified 1892.0003 0.0003409361 1438 P36562 cobT Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 1 2 1 1 39.102 37.429 2;3 0.043167 17707 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 60.893 52.789 110770000 5174500 11070000 0 0 0 0 6592000 0 65429000 0 0 0 0 0 3323800 0 0 0 10354000 4145600 4683000 0 0 0 1168 1438 1132 22693;22694;22695;22696;22697;22698;22699;22700;22701;22702 14006;14007 14007 1 AITMVDELK Unmodified 1018.5369 0.53688258 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 30.005 28.633 2 0.0018627 13174 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.181 76.767 1958600000 232380000 204280000 193770000 0 808090 0 134060000 137040000 133140000 0 0 0 130960000 140610000 134860000 0 0 0 180230000 177630000 158890000 0 0 0 1169 638 1133 22703;22704;22705;22706;22707;22708;22709;22710;22711;22712;22713;22714;22715 14008;14009;14010;14011;14012;14013;14014;14015;14016 14013 9 AITPPTPAVR Unmodified 1021.592 0.59202969 41 P00811 ampC Beta-lactamase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 21.6 21.732 2 0.00093351 8977 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.696 87.052 77795000 8120300 9301500 7775700 0 0 0 0 0 6448700 0 0 0 7570100 5328400 5201400 0 0 0 9185200 10412000 8451800 0 0 0 1170 41 1134 22716;22717;22718;22719;22720;22721;22722;22723;22724;22725 14017;14018;14019;14020;14021;14022;14023 14017 6 AITQYIGDNAK Unmodified 1192.6088 0.60880197 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 22.114 21.972 2 0.00016821 6673 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 108.57 105.63 75918000 23778000 16655000 2752400 5155500 3945200 4167800 0 0 0 1030100 1323800 0 3431300 3417000 0 0 0 0 4919000 0 4689500 653840 0 0 1171 1528 1135 22726;22727;22728;22729;22730;22731;22732;22733;22734;22735;22736;22737;22738 14024;14025;14026 14025 3 AIVCAGTWVK Unmodified 1103.5798 0.57975044 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.918 27.655 2 0.0039926 12749 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 69.812 61.471 332570000 39782000 36634000 32806000 0 0 0 26932000 29660000 0 0 0 0 24490000 29255000 24411000 0 0 0 29869000 28230000 25859000 0 4641300 0 1172 1550 1136 22739;22740;22741;22742;22743;22744;22745;22746;22747;22748;22749;22750 14027;14028;14029;14030;14031;14032 14028 6 AIVDQAR Unmodified 771.4239 0.42390173 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By matching 1 1 11.897 12.747 2 0.001881 3503 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.15 96.045 206340000 0 0 116560000 0 0 0 0 0 0 0 0 0 89782000 0 0 0 0 0 0 0 0 0 0 0 1173 688 1137 22751;22752 14033 14033 1 AIVEAAGLK Unmodified 870.51747 0.51746776 920 P0AF93 ridA 2-iminobutanoate/2-iminopropanoate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.124 20.519 2 0.00092123 8090 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 97.798 69.544 12009000000 1944500000 1528100000 1601400000 5439000 5993500 4611000 1442500000 1247700000 1303000000 0 0 0 462910000 408020000 0 0 0 0 693740000 658730000 702290000 0 0 0 1174 920 1138 22753;22754;22755;22756;22757;22758;22759;22760;22761;22762;22763;22764;22765;22766 14034;14035;14036;14037;14038;14039;14040;14041;14042;14043;14044;14045;14046;14047 14037 14 AIVEAAHEFGR Unmodified 1198.6095 0.60947067 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 1 1 2 1 2 19.042 19.398 2;3 7.9363E-05 5425 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 120.15 117.48 889510000 32513000 35284000 23365000 16683000 14387000 16474000 48609000 45902000 44621000 58767000 51412000 53130000 96550000 89387000 91062000 7684900 0 5539700 29877000 34191000 31211000 24904000 15185000 22775000 1175 146 1139 22767;22768;22769;22770;22771;22772;22773;22774;22775;22776;22777;22778;22779;22780;22781;22782;22783;22784;22785;22786;22787;22788;22789;22790;22791;22792;22793;22794;22795;22796;22797;22798;22799;22800;22801;22802;22803 14048;14049;14050;14051;14052;14053;14054;14055;14056;14057;14058;14059;14060;14061;14062;14063;14064 14064 17 AIVEEEHR Unmodified 981.48796 0.48795855 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.876 11.629 2 0.0031836 2862 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.262 68.368 291840000 42744000 39553000 37661000 0 0 0 20678000 23296000 19368000 0 0 0 17206000 19002000 19265000 2196200 0 0 15432000 15419000 20020000 0 0 0 1176 1244 1140 22804;22805;22806;22807;22808;22809;22810;22811;22812;22813;22814;22815;22816 14065;14066;14067;14068;14069 14067 4 AIVGGIAR Unmodified 755.46537 0.46537261 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 1 1 2 2 3 1 2 1 2 2 1 1 1 1 17.318 17.797 2 0.00055984 6353 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.8 92.118 2802100000 176110000 172590000 140560000 0 2264100 0 277100000 261980000 306080000 12507000 12242000 11950000 176060000 195420000 217630000 4112800 3809000 3290800 263410000 272810000 235530000 19430000 18100000 19088000 1177 651 1141 22817;22818;22819;22820;22821;22822;22823;22824;22825;22826;22827;22828;22829;22830;22831;22832;22833;22834;22835;22836;22837;22838;22839;22840;22841;22842;22843;22844;22845;22846;22847;22848 14070;14071;14072;14073;14074;14075;14076;14077;14078;14079;14080;14081;14082;14083;14084;14085;14086;14087;14088;14089;14090;14091;14092 14077 19 AIVITSR Unmodified 758.46504 0.46503826 1551 P41407 azoR FMN-dependent NADH-azoreductase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.56 16.368 2 0.00084363 5684 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.37 96.322 613250000 61276000 66483000 52711000 0 0 0 68675000 69288000 66816000 0 0 0 33889000 25465000 26780000 0 0 0 53042000 47539000 41285000 0 0 0 1178 1551 1142 22849;22850;22851;22852;22853;22854;22855;22856;22857;22858;22859;22860 14093;14094;14095 14094 3 AIVMPNLAPPVTTVEAAVAYR Unmodified 2182.182 0.18201047 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 2 2 53.892 52.475 2;3 2.783E-21 25945 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.27 153.54 338030000 72706000 68778000 51934000 0 0 0 6012800 5226100 5723800 0 0 0 11351000 16022000 16684000 0 0 0 25240000 29728000 28625000 0 0 0 1179 104 1143 22861;22862;22863;22864;22865;22866;22867;22868;22869;22870;22871;22872;22873;22874;22875;22876;22877;22878;22879;22880 14096;14097;14098;14099;14100;14101;14102;14103;14104;14105;14106 14101 9 AIVNLLYGGK Unmodified 1046.6124 0.61243078 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.744 36.606 2 0.0032326 18072 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 74.255 67.616 64048000 0 0 0 0 0 661810 10926000 9626400 11263000 2868700 2652800 2382900 0 0 0 0 0 0 0 0 17804000 1872200 1980600 2010100 1180 997 1144 22881;22882;22883;22884;22885;22886;22887;22888;22889;22890;22891 14107;14108;14109;14110 14109 4 AIVNLLYGGKR Unmodified 1202.7135 0.71354181 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 29.692 27.442 3 0.092302 10678 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 32.523 29.573 7770900 0 0 0 0 0 0 0 0 0 2000000 1695700 4075300 0 0 0 0 0 0 0 0 0 0 0 0 1181 997 1145 22892;22893;22894 14111 14111 1 AIVPAANVPK Unmodified 978.58622 0.58621603 1250 P24554 radA DNA repair protein RadA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.553 21.595 2 0.088978 7016 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 42.109 35.938 51824000 7301300 4840200 2998500 1028300 1084600 1034500 7807500 5132800 7052200 0 0 2735500 2313000 0 0 0 0 0 0 3489900 0 1725600 1286500 1993600 1182 1250 1146 22895;22896;22897;22898;22899;22900;22901;22902;22903;22904;22905;22906;22907;22908;22909 14112;14113 14112 2 AIVPSYGR Unmodified 861.47085 0.47085192 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 19.896 19.856 2 0.013133 6325 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 73.975 24.616 84132000 0 0 0 0 0 0 19107000 0 0 14586000 11371000 11247000 18266000 0 0 5204400 309850 4039600 0 0 0 0 0 0 1183 1435 1147 22910;22911;22912;22913;22914;22915;22916;22917 14114 14114 1 AIVQLEDGVQISSGDTLAR Unmodified 1971.0273 0.027283968 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 2 3 1 21 18 20 4 2 4 31 26 28 3 2 4 21 23 19 47.295 46.18 2;3 7.9227E-68 15943 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 311.21 304.08 16165000000 7002300 0 0 5947400 8584200 6534800 38782000 48349000 28213000 1052200000 930550000 871480000 47714000 31766000 42324000 3519600000 2908500000 2951800000 61027000 52244000 52086000 1101700000 1216200000 1182200000 1184 458 1148 22918;22919;22920;22921;22922;22923;22924;22925;22926;22927;22928;22929;22930;22931;22932;22933;22934;22935;22936;22937;22938;22939;22940;22941;22942;22943;22944;22945;22946;22947;22948;22949;22950;22951;22952;22953;22954;22955;22956;22957;22958;22959;22960;22961;22962;22963;22964;22965;22966;22967;22968;22969;22970;22971;22972;22973;22974;22975;22976;22977;22978;22979;22980;22981;22982;22983;22984;22985;22986;22987;22988;22989;22990;22991;22992;22993;22994;22995;22996;22997;22998;22999;23000;23001;23002;23003;23004;23005;23006;23007;23008;23009;23010;23011;23012;23013;23014;23015;23016;23017;23018;23019;23020;23021;23022;23023;23024;23025;23026;23027;23028;23029;23030;23031;23032;23033;23034;23035;23036;23037;23038;23039;23040;23041;23042;23043;23044;23045;23046;23047;23048;23049;23050;23051;23052;23053;23054;23055;23056;23057;23058;23059;23060;23061;23062;23063;23064;23065;23066;23067;23068;23069;23070;23071;23072;23073;23074;23075;23076;23077;23078;23079;23080;23081;23082;23083;23084;23085;23086;23087;23088;23089;23090;23091;23092;23093;23094;23095;23096;23097;23098;23099;23100;23101;23102;23103;23104;23105;23106;23107;23108;23109;23110;23111;23112;23113;23114;23115;23116;23117;23118;23119;23120;23121;23122;23123;23124;23125;23126;23127;23128;23129;23130;23131;23132;23133;23134;23135;23136;23137;23138;23139;23140;23141;23142;23143;23144;23145;23146;23147;23148;23149;23150;23151;23152;23153;23154;23155;23156;23157 14115;14116;14117;14118;14119;14120;14121;14122;14123;14124;14125;14126;14127;14128;14129;14130;14131;14132;14133;14134;14135;14136;14137;14138;14139;14140;14141;14142;14143;14144;14145;14146;14147;14148;14149;14150;14151;14152;14153;14154;14155;14156;14157;14158;14159;14160;14161;14162;14163;14164;14165;14166;14167;14168;14169;14170;14171;14172;14173;14174;14175;14176;14177;14178;14179;14180;14181;14182;14183;14184;14185;14186;14187;14188;14189;14190;14191;14192;14193;14194;14195;14196;14197;14198;14199;14200;14201;14202;14203;14204;14205;14206;14207;14208;14209;14210;14211;14212;14213;14214;14215;14216;14217;14218;14219;14220;14221;14222;14223;14224;14225;14226;14227;14228;14229;14230;14231;14232;14233;14234;14235;14236;14237;14238;14239;14240;14241;14242;14243;14244;14245;14246;14247;14248;14249;14250;14251;14252;14253;14254;14255;14256;14257;14258;14259;14260;14261;14262;14263;14264;14265;14266;14267;14268;14269;14270;14271;14272;14273;14274;14275;14276;14277;14278;14279;14280;14281;14282;14283;14284;14285;14286;14287;14288;14289;14290;14291;14292;14293;14294;14295;14296;14297;14298;14299;14300;14301;14302;14303;14304;14305;14306;14307;14308;14309;14310;14311;14312;14313;14314;14315;14316;14317;14318;14319;14320;14321;14322;14323;14324;14325;14326;14327;14328;14329;14330;14331;14332;14333;14334;14335;14336;14337;14338;14339;14340;14341;14342;14343;14344;14345;14346;14347;14348;14349;14350;14351;14352;14353;14354;14355;14356;14357;14358;14359;14360;14361;14362;14363;14364;14365;14366;14367;14368;14369;14370;14371;14372;14373;14374;14375;14376;14377;14378;14379;14380;14381;14382;14383;14384;14385;14386;14387;14388;14389;14390;14391;14392;14393;14394;14395;14396 14357 266 AIVRDPAVFLFDEPLSNLDAK Unmodified 2329.2318 0.23179744 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 52.395 51.209 2;3 2.0041E-27 20396 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 190.19 182.14 800690000 0 0 0 4134900 0 0 18930000 18375000 19051000 57904000 49108000 50863000 25475000 26221000 27578000 19009000 23105000 18991000 65568000 62160000 65348000 98693000 79576000 70602000 1185 1064 1149 23158;23159;23160;23161;23162;23163;23164;23165;23166;23167;23168;23169;23170;23171;23172;23173;23174;23175;23176;23177;23178;23179;23180;23181;23182 14397;14398;14399;14400;14401;14402;14403;14404;14405;14406;14407;14408;14409 14406 13 AIVTNDSGLMHVAAALNR Unmodified 1851.9625 0.96251564 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 37.647 36.067 3 0.027377 17386 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 42.338 31.703 16892000 0 4092400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4821000 3538900 4440200 0 0 0 1186 1488 1150 23183;23184;23185;23186 14410 14410 0 AIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPPLSHK Unmodified 3956.0618 0.061842341 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.238 50.214 5 1.8978E-07 20471 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.113 70.865 119800000 0 0 8598100 0 0 0 0 0 6793600 13571000 13446000 16324000 8348400 4229800 5333100 5009900 4221200 4647000 8862000 10154000 0 10260000 0 0 1187 1488 1151 23187;23188;23189;23190;23191;23192;23193;23194;23195;23196;23197;23198;23199;23200 14411 14411 1 AIVVTPDHPLAGK Unmodified 1316.7452 0.74523587 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 3 1 1 1 1 1 1 21.312 21.36 2;3 6.7055E-06 6383 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 150.08 145.62 428580000 66713000 53501000 46958000 1240900 0 1592400 15938000 20367000 16719000 3515300 2354200 2773300 20476000 15282000 16859000 35131000 29468000 26008000 18538000 14631000 13738000 2484300 2705900 1583600 1188 515 1152 23201;23202;23203;23204;23205;23206;23207;23208;23209;23210;23211;23212;23213;23214;23215;23216;23217;23218;23219;23220;23221;23222;23223;23224;23225;23226;23227;23228;23229 14412;14413;14414;14415;14416;14417;14418;14419;14420;14421;14422;14423;14424 14413 13 AIVVTPDHPLAGKK Unmodified 1444.8402 0.84019889 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 3 3 3 3 1 2 1 15.802 15.995 2;3;4 1.212E-05 4246 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 133.81 115.94 177520000 0 0 0 1526900 1629200 2663200 0 0 0 6175800 3018500 6417100 0 0 0 61931000 45232000 40946000 0 0 0 2613300 3176200 2187700 1189 515 1153 23230;23231;23232;23233;23234;23235;23236;23237;23238;23239;23240;23241;23242;23243;23244;23245;23246;23247;23248;23249;23250;23251 14425;14426;14427;14428;14429;14430;14431;14432 14425 8 AIWEQELTDMR Unmodified 1390.6551 0.65510023 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.606 39.902 2 1.3964E-08 19255 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 179.37 172.78 4841600000 604100000 602900000 554540000 1350500 1232700 979240 338680000 306140000 344170000 0 0 0 332720000 317880000 293950000 0 0 0 360810000 401430000 380070000 638450 0 0 1190 31 1154 23252;23253;23254;23255;23256;23257;23258;23259;23260;23261;23262;23263;23264;23265;23266;23267;23268 14433;14434;14435;14436;14437;14438;14439;14440;14441;14442;14443 14440 9 AIYPGTFDPITNGHIDIVTR Unmodified 2199.1324 0.13241774 249 P0A6I6 coaD Phosphopantetheine adenylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.44 44 3 5.0434E-07 21310 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 99.059 94.157 184730000 20090000 21340000 19562000 0 0 0 10883000 11231000 11759000 0 0 0 14539000 12170000 7506300 0 0 0 20474000 17178000 17994000 0 0 0 1191 249 1155 23269;23270;23271;23272;23273;23274;23275;23276;23277;23278;23279;23280 14444;14445 14445 2 AKAEAQVIIEQANK Unmodified 1511.8308 0.83075641 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 1 2 2 2 1 2 2 2 1 2 1 17.849 18.365 2;3 2.7127E-14 5488 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 191.53 180.43 280840000 0 0 0 21800000 15265000 18424000 23064000 17424000 21734000 10016000 7507700 8486500 16392000 14194000 12926000 0 0 0 23499000 22240000 24734000 7438200 9013100 6683300 1192 642 1156 23281;23282;23283;23284;23285;23286;23287;23288;23289;23290;23291;23292;23293;23294;23295;23296;23297;23298;23299;23300;23301;23302;23303;23304;23305;23306;23307;23308;23309;23310 14446;14447;14448;14449;14450;14451;14452;14453;14454;14455;14456;14457;14458;14459;14460;14461;14462;14463;14464;14465;14466;14467;14468;14469;14470;14471 14448 26 AKAEAQVIIEQANKR Unmodified 1667.9319 0.93186744 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 1 1 2 1 1 1 1 2 2 2 15.944 16.452 3;4 2.7282E-09 4799 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 141.85 141.85 202720000 0 0 0 7492200 7965600 6737300 4303500 5203100 9556400 25936000 20595000 18044000 4940200 2470200 4379800 0 6065300 3610800 6000400 5366100 6806100 18343000 18250000 20658000 1193 642 1157 23311;23312;23313;23314;23315;23316;23317;23318;23319;23320;23321;23322;23323;23324;23325;23326;23327;23328;23329;23330;23331;23332;23333;23334;23335;23336;23337;23338;23339;23340;23341;23342 14472;14473;14474;14475;14476;14477;14478;14479;14480;14481;14482;14483;14484 14473 13 AKAEQAGDNLSCIMVTYPSTHGVYEETIR Unmodified 3239.5227 0.52271244 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.171 35.563 4 1.3647E-07 13817 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 92.238 90.38 174830000 0 32774000 0 5254400 7231700 5686200 0 0 0 10336000 0 11567000 0 0 0 0 3325700 3441000 65633000 0 0 10400000 9318300 9858300 1194 1409 1158 23343;23344;23345;23346;23347;23348;23349;23350;23351;23352;23353;23354 14485;14486;14487;14488;14489;14490;14491 14485 7 AKAPIYFVSR Unmodified 1150.6499 0.64987892 1657 P63204 gadE Transcriptional regulator GadE yes yes 0 0 1 By matching By MS/MS By MS/MS By matching 1 2 1 1 21.618 21.432 2;3 0.0074854 6305 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 50.452 47.938 10610000 0 0 0 0 0 0 0 0 0 0 0 2595500 0 0 0 3572100 2525700 1916400 0 0 0 0 0 0 1195 1657 1159 23355;23356;23357;23358;23359 14492;14493 14493 2 AKDEADEK Unmodified 904.41379 0.41379055 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 4.1409 5.003 2 0.00052602 797 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.81 137.57 428140000 19113000 20153000 15644000 0 0 0 16405000 19254000 19465000 0 0 0 67505000 55567000 63699000 0 0 0 41956000 40384000 48993000 0 0 0 1196 990 1160 23360;23361;23362;23363;23364;23365;23366;23367;23368;23369;23370;23371;23372;23373;23374;23375;23376;23377 14494;14495;14496;14497;14498;14499;14500;14501;14502 14499 9 AKDEADEKDAIATVNK Unmodified 1716.853 0.853008 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 1 3 3 3 3 3 3 3 3 3 2 2 2 3 3 3 2 3 2 12.414 13.039 2;3;4 3.634E-74 3773 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 349.42 336.41 9583600000 1072400000 986880000 1012800000 6685500 5825500 4718800 566190000 596670000 607600000 23975000 21446000 24600000 714390000 708090000 598170000 14976000 12101000 6949000 856790000 826890000 886530000 7860800 11689000 9346400 1197 990 1161 23378;23379;23380;23381;23382;23383;23384;23385;23386;23387;23388;23389;23390;23391;23392;23393;23394;23395;23396;23397;23398;23399;23400;23401;23402;23403;23404;23405;23406;23407;23408;23409;23410;23411;23412;23413;23414;23415;23416;23417;23418;23419;23420;23421;23422;23423;23424;23425;23426;23427;23428;23429;23430;23431;23432;23433;23434;23435;23436;23437;23438;23439;23440 14503;14504;14505;14506;14507;14508;14509;14510;14511;14512;14513;14514;14515;14516;14517;14518;14519;14520;14521;14522;14523;14524;14525;14526;14527;14528;14529;14530;14531;14532;14533;14534;14535;14536;14537;14538 14528 35 AKDFEDAVEK Unmodified 1150.5506 0.55061839 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 13.701 14.282 2;3 2.1896E-05 4151 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 141.1 115.52 4704500000 207090000 255290000 217670000 102290000 100990000 98852000 657830000 580050000 617420000 144650000 123270000 116100000 249590000 84878000 173170000 7491700 8812000 7721600 207250000 257120000 216940000 120970000 96708000 52333000 1198 548 1162 23441;23442;23443;23444;23445;23446;23447;23448;23449;23450;23451;23452;23453;23454;23455;23456;23457;23458;23459;23460;23461;23462;23463;23464;23465;23466;23467;23468;23469;23470;23471;23472;23473;23474;23475;23476;23477;23478;23479;23480;23481;23482;23483;23484 14539;14540;14541;14542;14543;14544;14545;14546;14547;14548;14549;14550;14551;14552;14553;14554;14555;14556;14557;14558;14559;14560;14561;14562;14563;14564;14565 14562 25 AKDFEDAVEKAEK Unmodified 1478.7253 0.72528829 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 15.746 16.135 2;3 1.5013E-11 4404 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 181.98 170.76 256280000 0 0 0 35700000 31094000 30956000 0 0 0 29893000 21866000 25332000 0 0 0 0 0 0 0 0 0 28982000 23955000 28498000 1199 548 1163 23485;23486;23487;23488;23489;23490;23491;23492;23493;23494;23495;23496;23497;23498;23499;23500;23501;23502 14566;14567;14568;14569;14570;14571;14572;14573;14574;14575;14576;14577 14570 12 AKEDNIEMQGTVLETLPNTMFR Unmodified 2536.2302 0.23015923 1727 P69222 infA Translation initiation factor IF-1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 2 2 2 1 1 2 47.948 46.558 2;3 1.9887E-43 22752 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 309.35 306.44 1030300000 151310000 126830000 133300000 0 2126200 2351000 65851000 49202000 56882000 0 0 0 75926000 66908000 74671000 0 0 0 65282000 66502000 93152000 0 0 0 1200 1727 1164 23503;23504;23505;23506;23507;23508;23509;23510;23511;23512;23513;23514;23515;23516;23517;23518;23519;23520;23521;23522;23523;23524 14578;14579;14580;14581;14582;14583;14584;14585;14586;14587;14588;14589;14590;14591 14586 14 AKEFGRPQR Unmodified 1087.5887 0.58867565 342 P0A7G2 rbfA Ribosome-binding factor A yes yes 0 0 2 By MS/MS By matching By matching 1 1 1 10.459 10.614 3 0.078713 1989 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 41.448 28.492 21023000 0 0 0 0 0 0 0 0 0 6807400 6000800 8214500 0 0 0 0 0 0 0 0 0 0 0 0 1201 342 1165 23525;23526;23527 14592 14592 0 AKEIGYPLVVRPSYVLGGR Unmodified 2073.1735 0.1734947 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 36.059 34.134 4 0.056546 13092 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 35.748 35.71 7837000 0 0 0 0 911630 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2109600 2364600 2451100 1202 65 1166 23528;23529;23530;23531 14593;14594;14595 14595 3 AKEPALFR Unmodified 930.5287 0.52870115 1181 P21499 rnr Ribonuclease R yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 15.402 16.101 2 0.080283 5415 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 76.134 69.78 35019000 10332000 12395000 12292000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1203 1181 1167 23532;23533;23534 14596 14596 0 AKGENEAAFAAR Unmodified 1233.6102 0.61019895 103 P04995 sbcB Exodeoxyribonuclease I yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 11.796 12.572 2 0.048314 3403 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 51.762 39.715 42612000 0 0 0 0 0 0 0 8572600 0 0 0 0 0 5398400 3931600 3707200 0 0 5476900 6461400 9063500 0 0 0 1204 103 1168 23535;23536;23537;23538;23539;23540;23541 14597 14597 1 AKHLFTSESVSEGHPDK Unmodified 1867.9064 0.90644055 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 12.537 12.76 3 0.15733 3004 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 18.156 15.343 12811000 0 0 0 0 0 0 0 0 0 4867100 4336200 3608200 0 0 0 0 0 0 0 0 0 0 0 0 1205 388 1169 23542;23543;23544 14598 14598 1 AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPK Unmodified 3902.9538 0.95379126 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.968 49.751 5 0.0017568 17953 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 47.534 45.856 69983000 0 0 0 7544100 8697700 8806400 0 0 0 14067000 11641000 14927000 0 0 0 0 0 1896800 0 0 0 2403500 0 0 1206 388 1170 23545;23546;23547;23548;23549;23550;23551;23552 14599;14600;14601;14602 14601 4 AKHMSDETAR Unmodified 1144.5295 0.52950579 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 8.6184 9.0151 3 0.00022061 1745 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 102.95 95.306 39813000 0 0 0 3850200 3261700 3770800 0 0 0 7395000 5330600 5235300 0 0 0 0 1410100 877110 0 0 0 3598100 2596300 2488200 1207 595 1171 23553;23554;23555;23556;23557;23558;23559;23560;23561;23562;23563 14603;14604;14605;14606;14607;14608;14609;14610 14603 8 AKHPLFVTNVDDTR Unmodified 1611.8369 0.83690442 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 17.243 17.794 2;3 0.0010149 6664 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.374 60.373 224870000 0 6315000 6247100 3435700 3286000 2139500 22569000 19060000 18816000 6723200 4847400 4780900 12794000 9336300 13807000 0 0 0 27118000 27694000 24219000 4550800 3550900 3577900 1208 1427 1172 23564;23565;23566;23567;23568;23569;23570;23571;23572;23573;23574;23575;23576;23577;23578;23579;23580;23581;23582;23583;23584 14611;14612;14613;14614;14615;14616;14617 14613 7 AKHPLFVTNVDDTRLDDIAAWTYR Unmodified 2816.4246 0.42457702 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 42.677 40.548 5 0.0038109 16182 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 50.776 43.745 60674000 0 0 0 4024400 5945800 5469500 0 0 0 10734000 6890500 7919000 0 0 0 0 0 0 0 0 0 8249000 7541900 3900000 1209 1427 1173 23585;23586;23587;23588;23589;23590;23591;23592;23593 14618;14619;14620;14621;14622;14623 14618 6 AKIELSSAQQTDVNLPYITADATGPK Unmodified 2730.4076 0.40758955 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 40.155 38.387 3 1.0048E-15 15108 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 148.02 138.81 438810000 0 0 0 18201000 18542000 16542000 10636000 9020800 7611900 88232000 91317000 77318000 2819700 2227800 3170300 7396900 4967700 3254600 5806000 6938500 0 23769000 19624000 21413000 1210 293 1174 23594;23595;23596;23597;23598;23599;23600;23601;23602;23603;23604;23605;23606;23607;23608;23609;23610;23611;23612;23613;23614;23615;23616 14624;14625;14626;14627;14628;14629;14630;14631;14632;14633;14634;14635;14636;14637;14638;14639;14640 14631 16 AKLESLVEDLVNR Unmodified 1484.8199 0.81985738 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 3 2 2 2 3 2 2 42.919 41.45 2;3 1.8461E-31 20655 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 265.72 223.01 10471000000 790950000 727260000 656210000 111880000 100240000 92515000 1043500000 566130000 500740000 515800000 458780000 507070000 438650000 433140000 414330000 57009000 112240000 132240000 823430000 773830000 746900000 152660000 165350000 150250000 1211 293 1175 23617;23618;23619;23620;23621;23622;23623;23624;23625;23626;23627;23628;23629;23630;23631;23632;23633;23634;23635;23636;23637;23638;23639;23640;23641;23642;23643;23644;23645;23646;23647;23648;23649;23650;23651;23652;23653;23654;23655;23656;23657;23658;23659;23660;23661;23662;23663;23664 14641;14642;14643;14644;14645;14646;14647;14648;14649;14650;14651;14652;14653;14654;14655;14656;14657;14658;14659;14660;14661;14662;14663;14664;14665;14666;14667;14668;14669;14670;14671;14672;14673;14674;14675;14676;14677;14678;14679;14680;14681;14682;14683;14684 14654 43 AKLHDYYKDEVVK Unmodified 1606.8355 0.83550744 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 13.684 13.946 4 0.057556 3455 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 37.156 34.398 38699000 0 0 0 0 6490000 0 0 0 0 3732300 4493200 3436700 0 0 0 0 3832600 8162200 0 0 0 2670600 3788300 2093200 1212 1644 1176 23665;23666;23667;23668;23669;23670;23671;23672;23673 14685 14685 1 AKNALATIAQAQEESLGDNKPADDLLNLEGVDR Unmodified 3478.754 0.75396924 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 46.848 45.634 4 2.7853E-55 18016 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 232.38 226.89 799940000 0 0 0 0 0 0 0 0 0 36903000 26281000 23971000 0 0 0 127230000 128320000 183850000 0 0 0 94947000 97048000 81385000 1213 935 1177 23674;23675;23676;23677;23678;23679;23680;23681;23682 14686;14687;14688;14689;14690;14691;14692;14693 14692 8 AKNPDIEIIAR Unmodified 1238.6983 0.69828568 1544 P39830 ybaL Inner membrane protein YbaL yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.698 21.679 3 0.032621 6258 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 37.968 35.018 84024000 2935500 0 2511600 9018700 6756400 1382200 6006200 7365100 6054400 0 1754100 1609700 6360000 4681000 6086900 0 0 0 6281800 0 6090000 3369200 2678400 3082500 1214 1544 1178 23683;23684;23685;23686;23687;23688;23689;23690;23691;23692;23693;23694;23695;23696;23697;23698;23699;23700 14694;14695;14696;14697 14697 0 AKPAVHFGGK Unmodified 1010.5661 0.56614929 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.898 11.714 2 0.080181 2737 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 51.346 48.101 297750000 24077000 24089000 31341000 0 0 0 39331000 35788000 36830000 0 0 0 24924000 20209000 17838000 0 0 0 12587000 12999000 17739000 0 0 0 1215 283 1179 23701;23702;23703;23704;23705;23706;23707;23708;23709;23710;23711;23712 14698;14699;14700;14701;14702;14703 14703 6 AKPEIIK Unmodified 797.50109 0.50108942 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.418 12.041 2 0.089429 2651 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 62.714 46.56 389430000 35516000 32197000 0 4131500 4424000 7229800 24127000 23350000 21103000 22085000 19499000 22027000 19387000 18162000 16578000 0 2629700 2933200 29547000 24640000 21871000 15522000 13077000 9398600 1216 1009 1180 23713;23714;23715;23716;23717;23718;23719;23720;23721;23722;23723;23724;23725;23726;23727;23728;23729;23730;23731;23732;23733;23734 14704 14704 1 AKPGQDFFPLTVNYQER Unmodified 2009.0007 0.0006752871 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.565 36.706 3 0.00010347 12894 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 72.184 71.918 3398700000 177240000 164460000 179420000 24213000 22901000 22861000 288650000 298210000 283450000 18726000 17641000 19281000 250710000 261900000 219980000 0 0 0 357440000 373720000 378100000 13681000 13014000 13093000 1217 107 1181 23735;23736;23737;23738;23739;23740;23741;23742;23743;23744;23745;23746;23747;23748;23749;23750;23751;23752;23753;23754;23755 14705;14706;14707;14708 14707 3 AKPSSEIRPGK Unmodified 1168.6564 0.65642086 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 10.216 11.052 2;3 0.011704 2503 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 67.414 48.435 278440000 49827000 48543000 36306000 0 0 0 0 0 0 0 0 0 21800000 14802000 10756000 0 0 0 31928000 32584000 31896000 0 0 0 1218 1155 1182 23756;23757;23758;23759;23760;23761;23762;23763;23764;23765;23766;23767;23768;23769;23770;23771;23772;23773 14709;14710;14711;14712;14713;14714 14710 6 AKPTQAK Unmodified 742.43374 0.43373813 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 3.7271 4.6303 2 0.032034 621 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 78.616 56.913 1135000000 153490000 178280000 146500000 403210 508280 711870 0 0 0 0 0 0 69135000 67568000 57210000 0 0 0 159700000 153010000 148510000 0 0 0 1219 353 1183 23774;23775;23776;23777;23778;23779;23780;23781;23782;23783;23784;23785;23786 14715;14716;14717;14718;14719;14720;14721;14722 14716 8 AKPVLLEPIMK Unmodified 1237.7468 0.74681577 264 P0A6M8 fusA Elongation factor G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 29.286 27.89 2;3 0.00079331 13151 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 77.744 77.744 31565000000 3064300000 2933100000 2784300000 22056000 19494000 19361000 2073900000 2300600000 2130800000 22699000 18058000 21489000 2301400000 2297200000 2265900000 7488700 6033500 6381000 3007300000 3202500000 3002500000 16724000 18746000 23001000 1220 264 1184 23787;23788;23789;23790;23791;23792;23793;23794;23795;23796;23797;23798;23799;23800;23801;23802;23803;23804;23805;23806;23807;23808;23809;23810;23811;23812;23813;23814;23815;23816;23817;23818;23819;23820;23821;23822;23823;23824;23825;23826;23827;23828;23829;23830;23831 14723;14724;14725;14726;14727;14728;14729;14730;14731;14732;14733;14734;14735;14736;14737;14738;14739;14740;14741;14742;14743;14744;14745;14746;14747;14748;14749;14750;14751;14752;14753;14754;14755;14756;14757;14758;14759;14760;14761;14762;14763;14764;14765 14736 43 AKPVLLEPIMK Oxidation (M) 1253.7417 0.7417304 264 P0A6M8 fusA Elongation factor G yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 5 1 4 5 5 6 6 5 5 4 6 24.743 23.967 2;3 0.002599 12323 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.349 71.349 1178800000 121340000 98028000 79221000 774590 0 0 68055000 135210000 72756000 0 0 0 103180000 86769000 68561000 0 0 0 113690000 82552000 148660000 0 0 0 1221 264 1184 23832;23833;23834;23835;23836;23837;23838;23839;23840;23841;23842;23843;23844;23845;23846;23847;23848;23849;23850;23851;23852;23853;23854;23855;23856;23857;23858;23859;23860;23861;23862;23863;23864;23865;23866;23867;23868;23869;23870;23871;23872;23873;23874;23875;23876;23877;23878;23879;23880;23881;23882;23883;23884;23885;23886;23887;23888;23889;23890;23891;23892;23893;23894 14766;14767;14768;14769;14770;14771;14772;14773;14774;14775;14776;14777;14778;14779;14780;14781;14782;14783;14784;14785;14786;14787;14788;14789;14790;14791;14792;14793;14794;14795;14796;14797;14798;14799;14800;14801;14802;14803;14804;14805;14806;14807;14808;14809;14810;14811;14812;14813;14814;14815;14816 14813 109 51 AKQDLEMEALTFKPEEWGMK Unmodified 2380.1443 0.14430434 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 42.737 41.131 3;4 1.7321E-14 16241 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 141.93 135.28 913610000 34606000 35134000 35365000 10320000 7683000 5993500 30774000 26352000 24877000 43557000 46430000 40766000 68120000 52888000 67956000 18361000 6514500 14204000 89101000 99671000 77504000 26175000 30200000 21061000 1222 1426 1185 23895;23896;23897;23898;23899;23900;23901;23902;23903;23904;23905;23906;23907;23908;23909;23910;23911;23912;23913;23914;23915;23916;23917;23918;23919;23920;23921;23922;23923;23924;23925;23926;23927;23928;23929;23930;23931;23932;23933;23934;23935;23936 14817;14818;14819;14820;14821;14822;14823;14824;14825;14826;14827;14828;14829;14830;14831;14832;14833;14834;14835;14836 14822 19 AKQDYYEILGVSK Unmodified 1512.7824 0.78240924 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 2 30.249 28.708 2;3 8.3653E-06 11259 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 93.494 92.685 211780000 29782000 6044200 4016600 8024100 6457200 8145100 7144900 0 2982300 26227000 21987000 20674000 0 3502800 0 6251700 9275700 7389300 0 3688200 0 13624000 12661000 13907000 1223 190 1186 23937;23938;23939;23940;23941;23942;23943;23944;23945;23946;23947;23948;23949;23950;23951;23952;23953;23954;23955;23956;23957;23958;23959;23960;23961;23962;23963;23964;23965 14837;14838;14839;14840;14841;14842;14843;14844 14837 8 AKQPGLDFQSAK Unmodified 1288.6776 0.67755023 1001 P0AGA2 secY Protein translocase subunit SecY yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 15.956 16.495 2;3 3.6329E-05 4395 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 86.288 81.772 400920000 0 0 0 4650700 4285700 4596000 22595000 21873000 24331000 25865000 26870000 20313000 24130000 21890000 21497000 9903600 7664700 8375100 33075000 33510000 28752000 17483000 18629000 20627000 1224 1001 1187 23966;23967;23968;23969;23970;23971;23972;23973;23974;23975;23976;23977;23978;23979;23980;23981;23982;23983;23984;23985;23986;23987;23988;23989;23990;23991;23992;23993;23994;23995;23996;23997;23998;23999;24000;24001;24002;24003;24004;24005;24006 14845;14846;14847;14848;14849;14850;14851;14852;14853;14854;14855;14856;14857;14858;14859;14860;14861;14862;14863;14864 14847 20 AKYPDLQIIGGNVATAAGAR Unmodified 1985.0694 0.069423554 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 2 2 2 1 1 1 3 3 3 1 1 1 3 4 3 2 1 2 36.507 34.958 2;3;4 1.1354E-22 16722 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 230.86 216.83 4093000000 367840000 327910000 335950000 3169700 2402700 3735500 217830000 207930000 229240000 5273900 4330400 4027200 365300000 357290000 346410000 4005900 3433000 2763200 426440000 432330000 408020000 11919000 11571000 13911000 1225 788 1188 24007;24008;24009;24010;24011;24012;24013;24014;24015;24016;24017;24018;24019;24020;24021;24022;24023;24024;24025;24026;24027;24028;24029;24030;24031;24032;24033;24034;24035;24036;24037;24038;24039;24040;24041;24042;24043;24044;24045;24046;24047;24048;24049;24050;24051;24052;24053;24054 14865;14866;14867;14868;14869;14870;14871;14872;14873;14874;14875;14876;14877;14878;14879;14880;14881;14882;14883;14884;14885;14886;14887;14888;14889;14890;14891;14892 14883 28 ALAAALGQIEK Unmodified 1083.6288 0.62880913 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.463 28.157 2 9.5197E-05 10314 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 143.03 117.9 5802900000 325010000 324280000 281550000 67121000 55366000 62788000 452550000 407230000 385880000 406770000 384260000 371280000 213760000 229840000 228790000 53337000 45070000 49439000 358450000 355490000 336340000 141720000 139690000 126920000 1226 343 1189 24055;24056;24057;24058;24059;24060;24061;24062;24063;24064;24065;24066;24067;24068;24069;24070;24071;24072;24073;24074;24075;24076;24077;24078 14893;14894;14895;14896;14897;14898;14899;14900;14901;14902;14903;14904;14905;14906;14907;14908;14909;14910;14911;14912;14913;14914;14915;14916 14904 24 ALAAGADVVHFDVMDNHYVPNLTIGPMVLK Unmodified 3206.6257 0.62566137 976 P0AG07 rpe Ribulose-phosphate 3-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 1 53.08 51.633 3;4 2.3693E-17 25525 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155.45 153.59 691230000 113810000 90844000 108170000 0 0 0 46302000 49668000 45210000 0 0 0 33821000 39710000 39092000 0 0 0 57680000 55327000 11598000 0 0 0 1227 976 1190 24079;24080;24081;24082;24083;24084;24085;24086;24087;24088;24089;24090;24091;24092;24093;24094;24095;24096;24097;24098;24099;24100 14917;14918;14919;14920;14921;14922;14923;14924;14925;14926;14927;14928 14924 12 ALAAITVNYTPCGHCR Unmodified 1802.8556 0.85560773 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 26.909 25.711 2;3 5.9396E-31 12041 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 240.85 238.35 1767400000 16126000 21032000 15563000 0 1353200 0 295500000 287340000 327610000 3477000 2440100 1783800 122020000 123640000 132430000 0 671090 942220 138350000 137430000 138320000 0 1339500 0 1228 654 1191 24101;24102;24103;24104;24105;24106;24107;24108;24109;24110;24111;24112;24113;24114;24115;24116;24117;24118;24119;24120;24121;24122;24123;24124;24125;24126;24127;24128 14929;14930;14931;14932;14933;14934;14935;14936;14937;14938;14939;14940;14941;14942;14943;14944;14945;14946;14947 14931 19 ALAALQK Unmodified 713.44357 0.44357454 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.328 14.93 2 0.0015509 4691 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128 75.771 1665200000 125530000 96785000 83938000 18072000 16194000 20034000 126120000 136370000 130380000 50123000 38654000 36270000 98730000 84238000 85232000 20396000 16583000 17142000 127890000 133660000 130790000 21157000 30197000 20722000 1229 1050 1192 24129;24130;24131;24132;24133;24134;24135;24136;24137;24138;24139;24140;24141;24142;24143;24144;24145;24146;24147;24148;24149;24150;24151;24152 14948;14949;14950;14951;14952;14953;14954;14955;14956;14957;14958;14959;14960;14961;14962;14963 14954 11 ALADGATDYLER Unmodified 1293.6201 0.62009493 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.401 28.849 2 7.0723E-12 13443 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 192.26 171.39 314240000 28005000 28563000 24234000 0 0 0 20187000 24698000 22814000 1573300 1749000 1822300 21470000 20296000 19333000 0 0 0 30680000 34393000 32821000 0 0 1604200 1230 1230 1193 24153;24154;24155;24156;24157;24158;24159;24160;24161;24162;24163;24164;24165;24166;24167;24168 14964;14965;14966;14967;14968;14969;14970;14971;14972;14973;14974;14975;14976 14970 12 ALADITDPATGAVIVK Unmodified 1553.8665 0.86647322 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.539 38.682 2 4.3437E-06 18039 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 90.697 79.6 137970000 12760000 9769000 8385000 3057100 3611000 3207200 6627600 8069100 8239100 3241900 2956100 3093600 9300600 7935200 8608300 0 0 0 8195200 12155000 13492000 2628900 2637200 0 1231 1393 1194 24169;24170;24171;24172;24173;24174;24175;24176;24177;24178;24179;24180;24181;24182;24183;24184;24185;24186;24187;24188 14977;14978;14979;14980;14981;14982;14983;14984;14985;14986;14987 14987 8 ALADSCTDCR Unmodified 1167.4649 0.46485662 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.678 12.511 2 1.2636E-07 3410 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 209.87 199.64 893120000 47562000 37717000 37844000 0 0 0 101500000 123820000 94775000 0 0 0 89091000 74318000 72398000 0 0 0 67989000 73913000 72191000 0 0 0 1232 285 1195 24189;24190;24191;24192;24193;24194;24195;24196;24197;24198;24199;24200 14988;14989;14990;14991;14992;14993;14994;14995;14996;14997;14998 14991 10 ALAEAGCSAVK Unmodified 1075.5332 0.53319418 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.33 13.965 2 0.00027655 4341 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.692 44.565 5044700000 421870000 393280000 341990000 0 0 0 308700000 351460000 339270000 3630300 3246100 3172300 463660000 493100000 419360000 0 0 0 504990000 497030000 479060000 6976300 7062100 6811000 1233 788 1196 24201;24202;24203;24204;24205;24206;24207;24208;24209;24210;24211;24212;24213;24214;24215;24216;24217;24218 14999;15000;15001 15000 3 ALAEHGIVFGEPK Unmodified 1366.7245 0.72450043 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 25.156 24.171 2;3 6.4435E-09 8582 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 167.6 146.73 26299000000 1290200000 1213100000 1095300000 2112000000 2068200000 2078500000 974250000 966970000 989810000 264590000 281020000 245740000 781860000 697270000 782960000 80425000 75074000 69197000 1199900000 1269800000 1415300000 2289400000 2087900000 1970400000 1234 542 1197 24219;24220;24221;24222;24223;24224;24225;24226;24227;24228;24229;24230;24231;24232;24233;24234;24235;24236;24237;24238;24239;24240;24241;24242;24243;24244;24245;24246;24247;24248;24249;24250;24251;24252;24253;24254;24255;24256;24257;24258;24259;24260;24261;24262;24263;24264;24265;24266;24267;24268 15002;15003;15004;15005;15006;15007;15008;15009;15010;15011;15012;15013;15014;15015;15016;15017;15018;15019;15020;15021;15022;15023;15024;15025;15026;15027;15028;15029;15030;15031;15032;15033;15034;15035;15036;15037;15038;15039;15040;15041;15042;15043;15044;15045;15046;15047;15048;15049;15050;15051;15052;15053;15054;15055;15056;15057;15058;15059;15060;15061;15062;15063;15064;15065;15066;15067;15068;15069;15070;15071;15072;15073;15074;15075;15076;15077;15078;15079;15080;15081;15082 15037 80 ALAEQLPGIPIAGGDDFGSVTAGLAR Unmodified 2495.302 0.30200227 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 3 2 1 1 1 1 1 54.181 53.441 2;3 8.4636E-31 21000 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 150.06 149.63 183350000 0 0 0 0 0 0 0 0 3812500 0 0 0 5073200 0 0 37662000 36189000 32210000 4966500 4942700 0 16258000 21980000 20253000 1235 1448 1198 24269;24270;24271;24272;24273;24274;24275;24276;24277;24278;24279;24280;24281;24282 15083;15084;15085;15086;15087;15088;15089;15090 15083 6 ALAESIGITVEK Unmodified 1229.6867 0.68671794 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.123 30.546 2 8.2923E-05 14698 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.943 90.249 1302400000 148460000 0 134130000 931350 951750 810870 224700000 228780000 210580000 1687200 1585700 1502200 65909000 47518000 55812000 0 0 0 0 93862000 85175000 0 0 0 1236 449 1199 24283;24284;24285;24286;24287;24288;24289;24290;24291;24292;24293;24294;24295;24296;24297;24298 15091;15092;15093;15094;15095;15096;15097 15093 6 ALAFHPR Unmodified 810.45006 0.4500569 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.281 14.073 2 0.0059186 4453 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.64 96.291 95814000 10144000 11434000 12098000 0 0 0 7451900 6396800 5356900 2535600 0 0 5324700 4464500 5351100 0 0 0 9176500 8027800 8051600 0 0 0 1237 127 1200 24299;24300;24301;24302;24303;24304;24305;24306;24307;24308;24309;24310;24311 15098;15099 15099 1 ALAHFMGVPVAIAPTIASTDAPCSALSVIYTDEGEFDR Unmodified 3991.9336 0.93358986 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 54.819 53.368 3 1.1583E-22 26473 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 145.03 140.88 149440000 8771000 10770000 0 0 0 0 0 38399000 33650000 0 0 0 23303000 0 15627000 0 0 0 0 7399000 11520000 0 0 0 1238 554 1201 24312;24313;24314;24315;24316;24317;24318;24319 15100 15100 1 ALAIFGDTGPCDAALDLAK Unmodified 1917.9506 0.95061355 462 P0A8V0 rbn Ribonuclease BN yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.841 50.593 2 1.9342E-06 24626 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 115.12 102.35 130370000 13393000 11257000 8033300 0 0 0 13233000 7443100 8949100 0 0 0 13342000 9507800 8989700 0 0 0 10854000 12205000 13159000 0 0 0 1239 462 1202 24320;24321;24322;24323;24324;24325;24326;24327;24328;24329;24330;24331 15101;15102;15103;15104 15103 4 ALAINLVDPAAAGTVIEK Unmodified 1764.9986 0.99855002 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 48.834 47.5 2;3 7.1405E-18 23122 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 129.36 123.2 4919700000 1263200000 1325600000 1157300000 1492500 1592200 1920600 131130000 116950000 123860000 0 0 0 103920000 96346000 88338000 0 0 0 157280000 171420000 179480000 0 0 0 1240 852 1203 24332;24333;24334;24335;24336;24337;24338;24339;24340;24341;24342;24343;24344;24345;24346;24347;24348;24349;24350;24351;24352;24353;24354;24355;24356;24357;24358 15105;15106;15107;15108;15109;15110;15111;15112;15113;15114;15115;15116;15117;15118;15119;15120;15121;15122;15123;15124;15125;15126;15127;15128;15129 15111 25 ALALLNANGENAWK Unmodified 1483.7783 0.77832691 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.254 37.483 2 6.5963E-11 18251 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.55 162.21 281750000 74679000 56890000 70379000 5346200 0 5351800 4530100 4949300 6049500 0 2209900 1767900 6620000 5324000 5516800 0 0 0 12254000 9903800 9978500 0 0 0 1241 174 1204 24359;24360;24361;24362;24363;24364;24365;24366;24367;24368;24369;24370;24371;24372;24373;24374 15130;15131;15132;15133;15134;15135 15134 5 ALALQAAVEGCVNHMWTISCLQLHPK Unmodified 2946.4667 0.4666583 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.163 49.907 3;4 2.0257E-22 24595 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 168.57 166.12 1921000000 230130000 231710000 197630000 0 0 0 158140000 181290000 185020000 0 0 0 95309000 92046000 108610000 0 0 0 164940000 146920000 129220000 0 0 0 1242 313 1205 24375;24376;24377;24378;24379;24380;24381;24382;24383;24384;24385;24386;24387;24388;24389;24390;24391;24392;24393;24394;24395;24396;24397;24398 15136;15137;15138;15139;15140;15141;15142;15143;15144;15145;15146;15147;15148;15149;15150;15151;15152;15153;15154;15155 15141 20 ALALWMK Unmodified 831.46768 0.4676808 1705 P65556 yfcD Uncharacterized Nudix hydrolase YfcD yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.252 34.695 2 0.0066314 15839 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 94.669 85.198 539070000 35426000 33444000 27796000 0 0 0 46362000 50200000 47284000 0 0 0 56979000 48487000 50567000 0 0 0 45720000 43702000 53107000 0 0 0 1243 1705 1206 24399;24400;24401;24402;24403;24404;24405;24406;24407;24408;24409;24410 15156;15157;15158;15159;15160;15161;15162 15162 7 ALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGR Unmodified 3893.8717 0.87165831 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 55.173 53.691 3 1.7117E-17 26762 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.58 117.95 323240000 0 0 0 0 0 0 35285000 24763000 0 0 0 0 31107000 36502000 41201000 0 0 0 50851000 51103000 52424000 0 0 0 1244 161 1207 24411;24412;24413;24414;24415;24416;24417;24418 15163;15164 15163 2 ALANDSAWHR Unmodified 1139.5472 0.54720476 850 P0AED9 dcm DNA-cytosine methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 14.777 14.925 3 0.0078322 3715 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 52.278 45.619 14825000 0 0 0 0 0 0 0 0 0 1839400 1539700 1066600 0 0 0 1728800 2653900 2334200 0 3662800 0 0 0 0 1245 850 1208 24419;24420;24421;24422;24423;24424;24425 15165;15166 15165 2 ALANFMFDSDEAMVR Unmodified 1715.7647 0.76472704 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 1 49.161 47.764 2;3 7.0216E-21 23699 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.14 220.39 1113200000 127580000 116200000 101800000 2345000 2627700 2730200 131320000 128990000 121940000 6318700 5785900 8371900 70038000 55188000 55536000 0 0 0 59093000 56708000 59481000 0 0 1108700 1246 1662 1209 24426;24427;24428;24429;24430;24431;24432;24433;24434;24435;24436;24437;24438;24439;24440;24441;24442;24443;24444;24445;24446;24447;24448;24449;24450;24451 15167;15168;15169;15170;15171;15172;15173;15174;15175;15176;15177;15178;15179;15180;15181;15182 15167 14 ALAPLGNLIAFDVHSTDYCGDFSNPEGVAETVR Unmodified 3534.6725 0.6725478 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 54.057 52.612 3;4 1.7004E-43 25770 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 207.6 202.59 1000500000 0 20764000 17790000 0 0 0 78183000 82990000 71965000 0 0 0 104530000 98326000 94293000 0 0 0 149120000 144120000 138410000 0 0 0 1247 1497 1210 24452;24453;24454;24455;24456;24457;24458;24459;24460;24461;24462;24463;24464;24465;24466;24467;24468;24469;24470;24471 15183;15184;15185;15186;15187;15188;15189;15190;15191;15192;15193;15194;15195 15188 13 ALAQAMHQAGK Unmodified 1124.5761 0.57606205 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.47 12.303 2 0.00010936 3056 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 118.07 111.76 246550000 17296000 11526000 14018000 0 0 0 32700000 30673000 28766000 0 0 0 17187000 19355000 18975000 0 0 0 21421000 19644000 14989000 0 0 0 1248 681 1211 24472;24473;24474;24475;24476;24477;24478;24479;24480;24481;24482;24483 15196;15197;15198 15198 3 ALAQPLIDSGK Unmodified 1111.6237 0.62372375 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.362 23.466 2 0.00021104 10194 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.35 107.15 170420000 45138000 42892000 38241000 0 0 0 5771900 5228600 5029400 0 0 0 3016500 2606300 4085700 0 0 0 6589000 6396400 5426700 0 0 0 1249 1554 1212 24484;24485;24486;24487;24488;24489;24490;24491;24492;24493;24494;24495 15199;15200;15201;15202;15203;15204;15205;15206;15207;15208 15205 10 ALAQQLMQER Unmodified 1186.6128 0.61284149 259 P0A6L4 nanA N-acetylneuraminate lyase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.117 24.929 2 1.8129E-06 10780 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 160.88 152.02 602420000 77275000 79020000 73278000 0 256660 281000 29186000 25532000 29621000 0 0 762570 57777000 51754000 45946000 0 0 0 43657000 43902000 44173000 0 0 0 1250 259 1213 24496;24497;24498;24499;24500;24501;24502;24503;24504;24505;24506;24507;24508;24509;24510 15209;15210;15211;15212;15213;15214;15215;15216;15217;15218;15219 15217 8 ALAYMGLKPGIPLTEVAIDK Unmodified 2099.17 0.1700488 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 46.812 45.453 2;3 1.4349E-06 22014 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 131.53 126.16 295230000 73445000 83036000 78733000 0 0 0 7592300 6986100 4367500 0 0 0 6522000 6881700 6164800 0 0 0 8648500 6915400 5939300 0 0 0 1251 225 1214 24511;24512;24513;24514;24515;24516;24517;24518;24519;24520;24521;24522;24523;24524;24525 15220;15221;15222;15223;15224 15224 5 ALCDEHGIMLIADEVQSGAGR Unmodified 2241.0518 0.051800934 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 44.2 42.615 2;3 1.0477E-52 20878 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 311.26 308.18 1688500000 419400000 443760000 399110000 0 0 0 83938000 85289000 92641000 0 0 0 0 0 3109600 0 0 0 54329000 60311000 46585000 0 0 0 1252 1194 1215 24526;24527;24528;24529;24530;24531;24532;24533;24534;24535;24536;24537;24538;24539;24540;24541 15225;15226;15227;15228;15229;15230;15231;15232;15233 15228 9 ALCEAVAAR Unmodified 959.48585 0.48585006 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 14.927 15.53 1;2 9.5146E-08 5113 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 153.15 108.54 782320000 8313600 62283000 68805000 26293000 29686000 27245000 56577000 54699000 53777000 32886000 27005000 29553000 49759000 40851000 39803000 0 0 0 14172000 15801000 17714000 44603000 40105000 42390000 1253 215 1216 24542;24543;24544;24545;24546;24547;24548;24549;24550;24551;24552;24553;24554;24555;24556;24557;24558;24559;24560;24561;24562;24563;24564;24565;24566;24567;24568;24569;24570;24571;24572;24573;24574;24575;24576;24577;24578;24579;24580 15234;15235;15236;15237;15238;15239;15240;15241;15242;15243;15244 15237 9 ALCPDCHQPLQVLK Unmodified 1677.8331 0.83308137 1875 P76575 yfgJ Uncharacterized protein YfgJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 26.323 25.067 2;3 3.005E-14 11629 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 180.97 142.22 1160800000 83034000 81072000 71925000 0 0 0 125580000 112140000 105870000 3954300 3949600 7354200 90663000 90332000 93324000 0 0 0 108960000 88028000 85285000 2613500 3270300 3489100 1254 1875 1217 24581;24582;24583;24584;24585;24586;24587;24588;24589;24590;24591;24592;24593;24594;24595;24596;24597;24598;24599;24600;24601;24602;24603;24604;24605;24606;24607;24608;24609;24610;24611 15245;15246;15247;15248;15249;15250;15251;15252;15253;15254;15255;15256;15257;15258;15259;15260;15261;15262 15248 18 ALDAIIASVTESLK Unmodified 1429.8028 0.80281033 727 P0ACF4 hupB DNA-binding protein HU-beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 2 2 1 2 4 3 2 2 2 4 2 4 2 2 2 2 3 3 2 2 2 55.1 53.808 2;3 3.005E-14 21397 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 180.97 169.8 16445000000 1419200000 1356100000 1349900000 10912000 7599800 7729000 1263000000 1207900000 1105400000 34591000 38353000 34140000 1288200000 1274600000 1292000000 162380000 257550000 309300000 1413600000 1315200000 1222700000 22967000 27121000 24461000 1255 727 1218 24612;24613;24614;24615;24616;24617;24618;24619;24620;24621;24622;24623;24624;24625;24626;24627;24628;24629;24630;24631;24632;24633;24634;24635;24636;24637;24638;24639;24640;24641;24642;24643;24644;24645;24646;24647;24648;24649;24650;24651;24652;24653;24654;24655;24656;24657;24658;24659;24660;24661;24662;24663;24664;24665;24666;24667;24668;24669;24670;24671;24672 15263;15264;15265;15266;15267;15268;15269;15270;15271;15272;15273;15274;15275;15276;15277;15278;15279;15280;15281;15282;15283;15284;15285;15286;15287;15288;15289;15290;15291;15292;15293;15294;15295;15296;15297;15298;15299;15300;15301;15302;15303 15263 40 ALDAIIASVTESLKEGDDVALVGFGTFAVK Unmodified 3035.6067 0.60668329 727 P0ACF4 hupB DNA-binding protein HU-beta yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 56.281 55.959 3 4.8276E-23 21118 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 159.05 156.61 1624700000 57424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 253110000 816660000 554920000 0 0 0 0 0 0 1256 727 1219 24673;24674;24675;24676 15304;15305;15306 15305 3 ALDALLDYQDYPIPAAK Unmodified 1875.9618 0.96183016 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 2 2 1 1 1 1 2 2 2 2 2 1 1 1 52.129 50.828 2;3 1.3249E-06 23982 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 95.428 91.186 2232700000 29695000 179510000 169800000 0 0 0 195880000 199970000 182210000 2804100 3133900 2120300 38771000 182510000 176270000 0 0 0 289640000 278000000 291550000 3787800 3769600 3266400 1257 29 1220 24677;24678;24679;24680;24681;24682;24683;24684;24685;24686;24687;24688;24689;24690;24691;24692;24693;24694;24695;24696;24697;24698;24699;24700;24701;24702;24703;24704 15307;15308;15309;15310;15311;15312;15313;15314;15315;15316;15317;15318;15319;15320;15321 15319 15 ALDAYYALQQK Unmodified 1282.6558 0.65575216 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.46 29.936 2 4.8397E-05 11123 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 156.75 126.95 447440000 16279000 12150000 14060000 4939400 6077800 4590200 38790000 34689000 35796000 12358000 12670000 14366000 26875000 31013000 22462000 4677100 0 0 40299000 45709000 42888000 7615000 8543400 10591000 1258 819 1221 24705;24706;24707;24708;24709;24710;24711;24712;24713;24714;24715;24716;24717;24718;24719;24720;24721;24722;24723;24724;24725;24726 15322;15323;15324;15325;15326;15327;15328;15329;15330;15331;15332;15333;15334;15335;15336;15337;15338 15331 13 ALDDAIASVDK Unmodified 1116.5663 0.56626845 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 28.468 27.239 2 0.00011748 12428 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.52 103.14 322230000 116250000 102550000 99881000 1319000 1518400 707750 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1259 96 1222 24727;24728;24729;24730;24731;24732 15339;15340;15341 15341 3 ALDDAIASVDKFR Unmodified 1419.7358 0.73579339 96 P04949 fliC Flagellin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 36.08 34.461 3 2.4097E-05 11940 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 85.554 82.693 16831000 0 0 0 5898600 6034100 4898500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1260 96 1223 24733;24734;24735 15342;15343;15344 15344 3 ALDDFCQSLVDYLSAGHFSIYER Unmodified 2705.2432 0.24316676 969 P0AFX4 rsd Regulator of sigma D yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.025 53.582 3 0.0007173 19634 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 64.589 59.804 310430000 56004000 52022000 43491000 7154600 5197000 4820000 12883000 0 16668000 8123000 6011300 3987500 10146000 10082000 11177000 0 0 0 17188000 16698000 16882000 4674300 2608900 4607400 1261 969 1224 24736;24737;24738;24739;24740;24741;24742;24743;24744;24745;24746;24747;24748;24749;24750;24751;24752;24753;24754;24755 15345 15345 1 ALDDVKK Unmodified 787.44397 0.44396847 861 P0AEH5 elaB Protein ElaB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 2 1 1 1 1 2 2 1 10.004 10.661 2 0.023244 2528 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 78.616 3.8984 907690000 28002000 26126000 24309000 3206000 2629200 3204100 86963000 78995000 70562000 172060000 185530000 226030000 0 78354 0 0 0 0 0 0 0 0 0 0 1262 861 1225 24756;24757;24758;24759;24760;24761;24762;24763;24764;24765;24766;24767;24768;24769;24770;24771 15346;15347;15348;15349;15350 15347 5 ALDEGVICDMFEGHAPYKPR Unmodified 2304.0667 0.066722717 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.813 38.996 4 3.2513E-07 19278 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 103.85 103.09 1170300000 6136000 8473800 8556000 0 0 0 143470000 138520000 133740000 3052600 2368200 0 143710000 121270000 130710000 0 0 0 126040000 113720000 90540000 0 0 0 1263 1467 1226 24772;24773;24774;24775;24776;24777;24778;24779;24780;24781;24782;24783;24784;24785 15351;15352;15353 15352 2 ALDFGPIDELR Unmodified 1244.6401 0.6401021 1153 P18776 dmsB Anaerobic dimethyl sulfoxide reductase chain B yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.889 45.057 2 0.00054812 18123 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 99.653 80.299 22578000 0 0 0 0 0 0 0 0 0 3545800 3101100 3499800 0 0 0 0 0 0 0 5380500 4902400 2148100 0 0 1264 1153 1227 24786;24787;24788;24789;24790;24791 15354;15355 15354 2 ALDFIAER Unmodified 933.49198 0.4919813 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.42 30.095 2 0.00022739 14068 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 151.27 131.42 3488300000 164310000 194920000 150960000 0 523610 0 317640000 312320000 259790000 0 0 2045100 301440000 285690000 299920000 0 521020 0 409100000 412430000 376690000 0 0 0 1265 92 1228 24792;24793;24794;24795;24796;24797;24798;24799;24800;24801;24802;24803;24804;24805;24806 15356;15357;15358;15359;15360;15361;15362;15363;15364;15365 15358 7 ALDFIGAMDVSAPTPSSMNESTAK Unmodified 2439.1298 0.12977648 1678 P64490 yoaC Uncharacterized protein YoaC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 3 2 3 2 2 1 1 2 49.85 48.419 2;3 8.2399E-15 23902 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 185.26 180.41 188230000 0 0 0 0 0 0 32583000 38373000 35075000 0 0 0 30650000 17362000 14837000 0 0 0 4757700 3996700 10594000 0 0 0 1266 1678 1229 24807;24808;24809;24810;24811;24812;24813;24814;24815;24816;24817;24818;24819;24820;24821;24822;24823;24824 15366;15367;15368;15369 15368 4 ALDFLLEQGFVHK Unmodified 1515.8086 0.80856441 701 P0AC51 zur Zinc uptake regulation protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.122 44.622 3 0.15612 22249 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 12.833 3.2994 215060000 30213000 24633000 23454000 0 0 530150 22500000 19311000 20671000 0 0 0 10750000 11736000 0 0 0 0 13662000 19491000 18105000 0 0 0 1267 701 1230 24825;24826;24827;24828;24829;24830;24831;24832;24833;24834;24835;24836 15370 15370 1 ALDGELR Unmodified 772.40792 0.40791731 1232 P23930 lnt Apolipoprotein N-acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.698 30.342 2 0.074543 14552 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.551 6.3203 104080000 6275400 6602400 5468100 0 0 0 12575000 11775000 9488500 0 0 0 9537000 6188500 8625400 0 0 0 9251900 9808000 8489400 0 0 0 1268 1232 1231 24837;24838;24839;24840;24841;24842;24843;24844;24845;24846;24847;24848 15371;15372;15373;15374;15375;15376;15377;15378;15379;15380;15381 15371 11 ALDGVSFNLER Unmodified 1219.6197 0.619701 1463 P37313 dppF Dipeptide transport ATP-binding protein DppF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 38.133 35.77 2 0.00026522 12485 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 96.143 88.218 9459000 0 0 0 0 0 5881500 0 0 0 1463300 1034800 1079300 0 0 0 0 0 0 0 0 0 0 0 0 1269 1463 1232 24849;24850;24851;24852;24853 15382;15383 15383 2 ALDIAGDICIYTNHFHTIEELSYK Unmodified 2822.3585 0.35853087 329 P0A7B8 hslV ATP-dependent protease subunit HslV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.537 49.112 4 2.9264E-15 24382 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143.98 140.98 452170000 0 0 0 0 0 0 80934000 66597000 79386000 0 0 0 0 43199000 37236000 0 0 0 50595000 47453000 46769000 0 0 0 1270 329 1233 24854;24855;24856;24857;24858;24859;24860;24861 15384;15385;15386;15387 15384 4 ALDIIVTCQGGDYTNEIYPK Unmodified 2269.0936 0.093648974 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 45.848 44.376 2;3 8.2246E-30 21653 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 210.56 195.87 1405800000 187010000 157770000 159700000 773870 791360 0 124510000 119120000 113560000 0 0 0 75960000 75078000 72560000 0 0 0 105220000 104220000 109560000 0 0 0 1271 549 1234 24862;24863;24864;24865;24866;24867;24868;24869;24870;24871;24872;24873;24874;24875;24876;24877;24878;24879;24880;24881;24882;24883;24884;24885;24886;24887 15388;15389;15390;15391;15392;15393;15394;15395;15396;15397;15398;15399;15400 15392 13 ALDILTATPPDVFNHNLENVPR Unmodified 2445.2652 0.26522283 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 3 3 3 1 1 1 2 2 2 1 1 1 3 3 2 3 3 3 49.325 48.01 2;3;4 6.0712E-35 18969 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 210.06 194.36 2402600000 23821000 25230000 28184000 83598000 88628000 79950000 271240000 234350000 210300000 11693000 13748000 13441000 26527000 19871000 23986000 11289000 7688300 8326900 364080000 367100000 35536000 151000000 155660000 147360000 1272 1628 1235 24888;24889;24890;24891;24892;24893;24894;24895;24896;24897;24898;24899;24900;24901;24902;24903;24904;24905;24906;24907;24908;24909;24910;24911;24912;24913;24914;24915;24916;24917;24918;24919;24920;24921;24922;24923;24924;24925;24926;24927;24928;24929;24930;24931;24932;24933;24934;24935;24936;24937;24938;24939;24940 15401;15402;15403;15404;15405;15406;15407;15408;15409;15410;15411;15412;15413;15414;15415;15416;15417;15418;15419;15420;15421;15422;15423;15424;15425;15426;15427;15428;15429;15430;15431 15408 29 ALDIRPPAQPLALVSGAR Unmodified 1844.0632 0.063215964 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.089 40.189 3 7.2944E-07 16113 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 101.67 98.149 134150000 0 6468300 5238200 2173500 1841100 1558400 6059900 5974400 4827700 6882900 6034000 6402800 6756000 6637500 7959200 0 0 0 16124000 15878000 16841000 3156000 3568600 3768400 1273 477 1236 24941;24942;24943;24944;24945;24946;24947;24948;24949;24950;24951;24952;24953;24954;24955;24956;24957;24958;24959;24960 15432;15433;15434;15435;15436;15437;15438;15439 15433 7 ALDLSAEEK Unmodified 974.49204 0.49204087 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.256 19.744 2 7.3326E-05 7574 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.01 113.63 2101400000 215650000 200370000 184440000 7428500 6669400 6554600 174610000 0 0 0 2481800 2530300 223210000 196570000 164770000 0 0 0 236600000 228320000 245080000 0 3428300 2630600 1274 680 1237 24961;24962;24963;24964;24965;24966;24967;24968;24969;24970;24971;24972;24973;24974;24975;24976;24977;24978;24979;24980 15440;15441;15442;15443;15444;15445;15446;15447;15448;15449;15450;15451;15452;15453 15444 12 ALDNVNLK Unmodified 885.49198 0.4919813 593 P0AAG8 mglA Galactose/methyl galactoside import ATP-binding protein MglA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 17.951 18.634 2 0.0024084 7007 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.74 40.384 93352000 25210000 26410000 25483000 4606700 490330 597830 0 0 0 0 0 0 2502900 0 2026100 0 0 0 0 2701500 3323000 0 0 0 1275 593 1238 24981;24982;24983;24984;24985;24986;24987;24988;24989;24990;24991;24992;24993 15454;15455 15455 2 ALDQTGFK Unmodified 878.44978 0.44978213 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 16.014 16.767 2 0.0019651 5468 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 104.45 86.069 287910000 18908000 20868000 21144000 0 0 0 27305000 23560000 24002000 0 0 0 24300000 16393000 20063000 574710 0 0 31542000 31128000 28122000 0 0 0 1276 121 1239 24994;24995;24996;24997;24998;24999;25000;25001;25002;25003;25004;25005;25006 15456 15456 1 ALDSFRGDSAFYTWLYR Unmodified 2066.985 0.98502522 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 49.371 49.427 2 1.6937E-62 19006 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 315.43 309.94 55963000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30926000 15017000 10021000 0 0 0 0 0 0 1277 1005 1240 25007;25008;25009 15457;15458;15459 15457 3 ALDVATNVLQR Unmodified 1198.667 0.66698555 1516 P39265 alsB D-allose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.475 30.119 2 2.4201E-07 14092 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 162.97 122.9 118000000 20754000 21985000 15925000 0 0 0 7259400 9504800 7896600 0 0 0 5070500 4995700 7011700 0 0 0 4787600 4953200 7859800 0 0 0 1278 1516 1241 25010;25011;25012;25013;25014;25015;25016;25017;25018;25019;25020;25021 15460;15461;15462;15463;15464;15465 15462 6 ALDVEQIR Unmodified 942.51345 0.51344502 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.114 22.342 2 0.00075373 9919 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.59 102.63 200350000 22405000 17896000 20669000 0 0 0 14915000 18380000 18352000 0 2960000 0 12480000 9771000 10925000 0 0 0 16470000 17674000 17449000 0 0 0 1279 127 1242 25022;25023;25024;25025;25026;25027;25028;25029;25030;25031;25032;25033;25034 15466;15467;15468 15466 1 ALEAAGVPVIGTSPDAIDR Unmodified 1850.9738 0.97379183 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 2 2 2 2 2 2 1 2 1 41.927 40.219 2;3 1.6269E-22 18760 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 189.3 178.69 1428500000 326130000 305820000 261860000 0 718560 0 4802600 3663900 4562700 0 0 0 33128000 34345000 35057000 0 0 0 131830000 138290000 138580000 3010800 3674200 3055300 1280 65 1243 25035;25036;25037;25038;25039;25040;25041;25042;25043;25044;25045;25046;25047;25048;25049;25050;25051;25052;25053;25054;25055;25056;25057;25058;25059;25060 15469;15470;15471;15472;15473;15474;15475;15476;15477;15478;15479;15480;15481;15482;15483 15483 14 ALEEAGAEVEVK Unmodified 1243.6296 0.62959699 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 6 4 4 4 3 4 4 4 6 3 6 7 5 6 3 3 5 4 7 3 4 4 24.843 24.313 2;3 9.4573E-06 6841 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 160.75 120.71 8236800000 824730000 704870000 663020000 196630000 198580000 205060000 338790000 352620000 356850000 164890000 147560000 139910000 544390000 470730000 461980000 79806000 54454000 60521000 602370000 651790000 620300000 151860000 125970000 119120000 1281 351 1244 25061;25062;25063;25064;25065;25066;25067;25068;25069;25070;25071;25072;25073;25074;25075;25076;25077;25078;25079;25080;25081;25082;25083;25084;25085;25086;25087;25088;25089;25090;25091;25092;25093;25094;25095;25096;25097;25098;25099;25100;25101;25102;25103;25104;25105;25106;25107;25108;25109;25110;25111;25112;25113;25114;25115;25116;25117;25118;25119;25120;25121;25122;25123;25124;25125;25126;25127;25128;25129;25130;25131;25132;25133;25134;25135;25136;25137;25138;25139;25140;25141;25142;25143;25144;25145;25146;25147;25148;25149;25150;25151;25152;25153;25154;25155;25156;25157;25158;25159;25160;25161;25162;25163;25164;25165;25166;25167;25168;25169 15484;15485;15486;15487;15488;15489;15490;15491;15492;15493;15494;15495;15496;15497;15498;15499;15500;15501;15502;15503;15504;15505;15506;15507;15508;15509;15510;15511;15512;15513;15514;15515;15516;15517;15518;15519;15520;15521;15522;15523;15524;15525;15526;15527;15528;15529;15530;15531;15532;15533;15534;15535;15536;15537;15538;15539;15540;15541;15542;15543;15544;15545;15546;15547;15548;15549;15550;15551;15552;15553;15554;15555;15556;15557;15558;15559;15560;15561;15562;15563;15564;15565;15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576;15577;15578;15579;15580;15581;15582;15583;15584;15585;15586;15587;15588;15589;15590;15591;15592;15593;15594;15595;15596;15597;15598;15599;15600;15601;15602;15603;15604;15605;15606;15607;15608;15609;15610;15611;15612;15613;15614;15615;15616;15617;15618;15619;15620;15621;15622 15500 139 ALEEANADLEVK Unmodified 1300.6511 0.65106071 6;12;4 CON__P02533;CON__Q6IFX2;CON__P08779;CON__ENSEMBL:ENSP00000377550;CON__P13646-1 no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 23.951 23.031 2 2.7016E-08 8258 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 166.19 153.15 71124000 0 0 0 2726900 2173100 1693700 0 0 0 16733000 16625000 10968000 0 0 0 809690 0 648320 0 0 0 7682400 5668900 5394900 + 1282 6;12;4 1245 25170;25171;25172;25173;25174;25175;25176;25177;25178;25179;25180 15623;15624;15625;15626;15627 15623 5 ALEEGIR Unmodified 786.42357 0.42356738 1336 P30125 leuB 3-isopropylmalate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 13.97 14.777 2 0.0078283 4502 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.838 51.76 111340000 42077000 10380000 37646000 440350 0 0 4176700 5380000 4186900 0 0 0 0 0 0 0 0 0 3997200 0 3060400 0 0 0 1283 1336 1246 25181;25182;25183;25184;25185;25186;25187;25188;25189;25190 15628;15629 15629 2 ALEESNYELEGK Unmodified 1380.6409 0.64088996 13;7 CON__P13645;CON__P02535-1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 2 1 1 21.934 21.655 2 4.0644E-09 7357 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 178.22 174.2 719290000 0 0 0 18610000 19881000 23174000 0 0 0 65964000 57305000 30099000 0 0 0 57581000 40220000 37230000 0 3883000 0 83540000 133060000 148750000 + 1284 13;7 1247 25191;25192;25193;25194;25195;25196;25197;25198;25199;25200;25201;25202;25203;25204;25205 15630;15631;15632;15633;15634;15635;15636;15637;15638;15639;15640;15641 15633 12 ALEETVLFAGQK Unmodified 1304.6976 0.69761697 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 35.342 34.002 2 0.00066717 16278 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.692 88.539 20868000 6741600 8013700 6112400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1285 1814 1248 25206;25207;25208 15642;15643;15644 15643 0 ALEEVGLTEAQAQEMYR Unmodified 1936.92 0.9200417 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 37.881 36.152 2;3 1.0487E-31 17892 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 304.51 286.38 966990000 21081000 20766000 16340000 8102700 8112700 8767200 48271000 47977000 55553000 22688000 24273000 15924000 67902000 58531000 60087000 3231400 1618800 1580600 85482000 86212000 84960000 72057000 72309000 75166000 1286 1067 1249 25209;25210;25211;25212;25213;25214;25215;25216;25217;25218;25219;25220;25221;25222;25223;25224;25225;25226;25227;25228;25229;25230;25231;25232;25233;25234;25235;25236;25237;25238;25239;25240;25241;25242;25243;25244;25245;25246;25247;25248;25249;25250;25251;25252;25253 15645;15646;15647;15648;15649;15650;15651;15652;15653;15654;15655;15656;15657;15658;15659;15660;15661;15662;15663;15664;15665;15666;15667;15668;15669;15670;15671;15672;15673;15674;15675;15676 15652 32 ALEFGPIEELR Unmodified 1272.6714 0.67140222 598 P0AAJ1 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 45.501 43.695 2 0.00010878 21649 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.18 112.4 30994000 0 0 0 0 0 0 5287900 6746300 4671400 2647500 1975500 1446200 2827000 2169100 3222700 0 0 0 0 0 0 0 0 0 1287 598 1250 25254;25255;25256;25257;25258;25259;25260;25261;25262 15677;15678 15677 2 ALEGDAEWEAK Unmodified 1217.5564 0.55643205 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 11 8 2 1 1 7 8 8 2 2 2 11 10 10 1 1 1 12 13 9 1 1 2 29.183 28.015 2 6.491E-05 10346 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 114.84 109.36 61704000000 4322600000 3847500000 3999500000 73116000 84702000 73007000 6029000000 4995100000 4891400000 41888000 35306000 33439000 5214500000 4896700000 5050300000 16022000 13255000 15073000 5752800000 6233800000 5992000000 28839000 31652000 32202000 1288 1048 1251 25263;25264;25265;25266;25267;25268;25269;25270;25271;25272;25273;25274;25275;25276;25277;25278;25279;25280;25281;25282;25283;25284;25285;25286;25287;25288;25289;25290;25291;25292;25293;25294;25295;25296;25297;25298;25299;25300;25301;25302;25303;25304;25305;25306;25307;25308;25309;25310;25311;25312;25313;25314;25315;25316;25317;25318;25319;25320;25321;25322;25323;25324;25325;25326;25327;25328;25329;25330;25331;25332;25333;25334;25335;25336;25337;25338;25339;25340;25341;25342;25343;25344;25345;25346;25347;25348;25349;25350;25351;25352;25353;25354;25355;25356;25357;25358;25359;25360;25361;25362;25363;25364;25365;25366;25367;25368;25369;25370;25371;25372;25373;25374;25375;25376;25377;25378;25379;25380;25381;25382;25383;25384;25385;25386;25387;25388;25389;25390;25391;25392;25393;25394;25395 15679;15680;15681;15682;15683;15684;15685;15686;15687;15688;15689;15690;15691;15692;15693;15694;15695;15696;15697;15698;15699;15700;15701;15702;15703;15704;15705;15706;15707;15708;15709;15710;15711;15712;15713;15714;15715;15716;15717;15718;15719;15720;15721;15722;15723;15724;15725;15726;15727;15728;15729;15730;15731;15732;15733;15734;15735;15736;15737;15738;15739;15740;15741;15742;15743;15744;15745;15746;15747;15748;15749;15750;15751;15752;15753;15754;15755;15756;15757;15758;15759;15760;15761;15762;15763;15764;15765;15766;15767;15768;15769;15770;15771;15772;15773;15774;15775;15776;15777;15778;15779;15780;15781;15782;15783;15784;15785;15786;15787;15788;15789;15790;15791;15792;15793;15794;15795;15796;15797;15798;15799;15800;15801;15802;15803;15804;15805;15806;15807;15808;15809;15810;15811;15812;15813;15814;15815;15816;15817;15818;15819;15820;15821;15822;15823 15719 132 ALEGGINFFDTANSYSDGSSEEIVGR Unmodified 2734.2358 0.23583277 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 51.611 50.325 2 6.9196E-72 24761 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 273.88 262.44 65267000 13546000 15408000 8411800 0 0 0 7670800 5706100 5808300 0 0 0 0 3084600 0 0 0 0 2775400 2855100 0 0 0 0 1289 1934 1252 25396;25397;25398;25399;25400;25401;25402;25403;25404 15824 15824 1 ALEGINIIK Unmodified 969.58588 0.58588168 1999 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 2 2 2 1 1 1 2 1 2 37.684 35.928 2 0.0038193 17912 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 80.229 66.072 1032100000 37825000 41648000 34989000 0 0 0 147410000 169640000 140560000 0 0 0 50674000 54516000 39855000 0 0 0 128080000 59475000 127430000 0 0 0 + 1290 1999 1253 25405;25406;25407;25408;25409;25410;25411;25412;25413;25414;25415;25416;25417;25418;25419;25420;25421 15825;15826;15827;15828;15829 15825 5 ALEIEEMQLK Oxidation (M) 1218.6166 0.61658946 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 5 5 5 1 1 1 6 8 6 1 1 1 4 5 4 29.878 28.669 2 4.1159E-06 8243 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 139.88 110.79 2724900000 7250800 4938400 25942000 0 0 0 12515000 10445000 0 174460000 200030000 189580000 1282800 13711000 11566000 519940000 420290000 476100000 10196000 6667100 6250100 206300000 232160000 195330000 1291 463 1254 25422;25423;25424;25425;25426;25427;25428;25429;25430;25431;25432;25433;25434;25435;25436;25437;25438;25439;25440;25441;25442;25443;25444;25445;25446;25447;25448;25449;25450;25451;25452;25453;25454;25455;25456;25457;25458;25459;25460;25461;25462;25463;25464;25465;25466;25467;25468;25469;25470;25471;25472;25473;25474;25475;25476;25477;25478;25479;25480;25481 15830;15831;15832;15833;15834;15835;15836;15837;15838;15839;15840;15841;15842;15843;15844;15845;15846;15847;15848;15849;15850;15851;15852;15853;15854;15855;15856;15857;15858;15859;15860;15861;15862;15863;15864;15865;15866;15867;15868;15869;15870;15871;15872;15873;15874 15840 251 44 ALEIEEMQLK Unmodified 1202.6217 0.62167484 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 3 1 1 1 1 4 4 2 1 1 1 2 3 4 36.382 34.947 2;3 9.0718E-07 16413 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 170.66 166.55 52920000000 424880000 407550000 344710000 25637000 26082000 24168000 272270000 252880000 236510000 2817900000 2874400000 2403800000 306710000 284830000 262590000 10564000000 9398600000 9422100000 382530000 382690000 335760000 3618000000 3937700000 3914000000 1292 463 1254 25482;25483;25484;25485;25486;25487;25488;25489;25490;25491;25492;25493;25494;25495;25496;25497;25498;25499;25500;25501;25502;25503;25504;25505;25506;25507;25508;25509;25510;25511;25512;25513;25514;25515;25516;25517;25518;25519;25520;25521 15875;15876;15877;15878;15879;15880;15881;15882;15883;15884;15885;15886;15887;15888;15889;15890;15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907;15908;15909;15910;15911;15912;15913;15914;15915;15916;15917;15918;15919;15920;15921;15922;15923;15924 15920 46 ALEIISELAAK Unmodified 1156.6703 0.67033959 1751 P69829 ptsN Nitrogen regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 43.649 42.1 2 0.00016821 20881 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.57 60.995 840870000 79774000 71285000 63637000 0 0 0 81592000 75908000 65068000 0 0 0 59481000 59974000 52431000 0 0 0 74575000 77831000 79313000 0 0 0 1293 1751 1255 25522;25523;25524;25525;25526;25527;25528;25529;25530;25531;25532;25533;25534 15925;15926;15927;15928;15929;15930;15931;15932;15933;15934;15935 15926 10 ALEINSQSLDNNAAFIR Unmodified 1874.9486 0.94863972 465 P0A8W0 nanR Transcriptional regulator NanR yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 40.783 39.157 2 1.0679E-18 19037 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.59 167.78 53992000 6943700 9342100 6345900 0 0 0 4255300 5626300 0 0 0 0 2294000 3368400 3766000 0 0 0 4237200 4206200 3607200 0 0 0 1294 465 1256 25535;25536;25537;25538;25539;25540;25541;25542;25543;25544;25545 15936;15937 15937 2 ALEKGIK Unmodified 757.46979 0.46978929 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.555 12.134 2 0.13238 2816 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 58.167 10.424 212110000 17798000 18591000 17404000 0 0 0 18857000 15402000 15725000 7573700 2075300 7341200 13066000 11621000 9124400 4456900 3374700 2405000 16828000 14902000 15568000 0 0 0 1295 1031 1257 25546;25547;25548;25549;25550;25551;25552;25553;25554;25555;25556;25557;25558;25559;25560;25561;25562;25563 15938 15938 1 ALELEEIPGIVNDFR Unmodified 1713.8938 0.8937506 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.282 52.834 3 4.697E-09 26124 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.7 107.65 213960000 5304200 4824900 6870700 0 0 0 20984000 20619000 16311000 0 0 0 19926000 23108000 24724000 0 0 0 25785000 22131000 23376000 0 0 0 1296 1890 1258 25564;25565;25566;25567;25568;25569;25570;25571;25572;25573;25574;25575 15939;15940;15941 15940 3 ALELGAIDFVTKPQLGIR Unmodified 1940.1095 0.10949745 159 P07330 cheB Chemotaxis response regulator protein-glutamate methylesterase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 49.035 47.689 3 3.8223E-05 23302 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.007 78.816 50030000 11947000 14301000 17163000 2652500 1941700 2025600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1297 159 1259 25576;25577;25578;25579;25580;25581 15942;15943;15944 15943 3 ALELLKPLLEDEK Unmodified 1509.8654 0.86541058 37 P00582 polA DNA polymerase I yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 43.201 41.75 2;3 4.9589E-12 20376 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.46 161.61 1657300000 163000000 143040000 123130000 1569000 1693000 1534300 138190000 133550000 118890000 5087000 5627800 5357600 90864000 89341000 89394000 32327000 52396000 46465000 152200000 122570000 135940000 0 2457900 2637700 1298 37 1260 25582;25583;25584;25585;25586;25587;25588;25589;25590;25591;25592;25593;25594;25595;25596;25597;25598;25599;25600;25601;25602;25603;25604;25605;25606;25607;25608;25609;25610;25611;25612;25613;25614;25615;25616;25617;25618;25619;25620;25621;25622 15945;15946;15947;15948;15949;15950;15951;15952;15953;15954;15955;15956;15957;15958;15959;15960;15961;15962;15963;15964;15965;15966;15967;15968;15969;15970;15971;15972;15973;15974 15958 30 ALEMIDMHGGDLFSEE Unmodified 1792.7648 0.76478662 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 51.074 49.933 2 2.2024E-39 23467 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 261.87 261.87 1547200000 85885000 74626000 74013000 22564000 23129000 20803000 66062000 63235000 58518000 86970000 74722000 64335000 87149000 91862000 92483000 30541000 17923000 18167000 113300000 139410000 130940000 35822000 30255000 44506000 1299 564 1261 25623;25624;25625;25626;25627;25628;25629;25630;25631;25632;25633;25634;25635;25636;25637;25638;25639;25640;25641;25642;25643;25644;25645;25646;25647 15975;15976;15977;15978;15979;15980;15981;15982;15983;15984;15985;15986;15987;15988;15989;15990;15991;15992;15993;15994;15995;15996;15997;15998 15996 24 ALENALLEFPGCAMVISHDR Unmodified 2242.0875 0.087458159 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 1 50.077 48.674 2;3 6.6121E-19 24026 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 220.21 202.1 4238700000 430270000 405380000 429240000 7342400 8576400 6723600 271610000 268370000 271550000 0 7276600 7200000 312530000 272300000 291890000 0 0 0 398130000 413770000 419290000 6510700 6070400 4643400 1300 561 1262 25648;25649;25650;25651;25652;25653;25654;25655;25656;25657;25658;25659;25660;25661;25662;25663;25664;25665;25666;25667;25668;25669;25670;25671;25672;25673;25674;25675;25676;25677;25678;25679 15999;16000;16001;16002;16003;16004;16005;16006;16007;16008;16009;16010;16011;16012;16013;16014;16015;16016;16017;16018;16019;16020;16021;16022;16023 16005 22 ALENGEQVK Unmodified 986.50327 0.50327426 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 1 3 2 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 11.508 12.091 2 0.00011997 2544 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 133.55 113.91 717080000 0 108690000 93097000 10080000 7348000 3854500 36827000 59982000 13483000 31966000 4428600 27748000 18456000 12384000 15676000 54689000 60954000 63552000 25580000 23532000 24212000 8991300 5454800 6084200 1301 290 1263 25680;25681;25682;25683;25684;25685;25686;25687;25688;25689;25690;25691;25692;25693;25694;25695;25696;25697;25698;25699;25700;25701;25702;25703;25704;25705;25706;25707;25708;25709 16024;16025;16026;16027;16028;16029;16030;16031;16032;16033;16034;16035;16036;16037 16025 12 ALEPGGHDR Unmodified 950.45699 0.45699277 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.322 11.152 2 0.00063648 2501 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.14 93.767 807820000 0 9887000 7334800 0 0 0 84527000 89395000 81974000 0 0 0 74846000 83799000 79731000 0 0 0 102140000 104930000 89265000 0 0 0 1302 946 1264 25710;25711;25712;25713;25714;25715;25716;25717;25718;25719;25720 16038;16039;16040;16041 16038 4 ALERGEGQPGDIETLEQLCR Unmodified 2270.0961 0.09610859 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 34.017 32.518 3 4.3559E-10 11209 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 113.23 111.7 65299000 0 0 0 8056200 9206200 9433200 0 0 0 0 4005100 6529200 0 0 0 0 3005100 4078000 0 0 0 7239000 6259800 7487200 1303 1383 1265 25721;25722;25723;25724;25725;25726;25727;25728;25729;25730 16042;16043;16044;16045;16046;16047;16048 16048 7 ALESFQGTGR Unmodified 1064.5251 0.52507234 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.615 18.116 2 4.5668E-05 6590 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 161.02 148.02 397940000 22494000 25165000 23502000 1472500 0 1520100 39507000 38816000 38232000 5272600 3764500 3717700 31616000 25206000 25257000 0 0 0 38212000 37276000 34332000 1399900 0 1176300 1304 1145 1266 25731;25732;25733;25734;25735;25736;25737;25738;25739;25740;25741;25742;25743;25744;25745;25746;25747;25748;25749 16049;16050;16051;16052;16053;16054;16055;16056;16057;16058;16059;16060 16057 9 ALETALPYMTDGR Unmodified 1436.697 0.69696505 675 P0ABS5 dnaG DNA primase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 37.776 36.134 2 0.13301 17793 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 39.657 35.502 51944000 5192200 4003300 0 0 0 0 0 6830200 4238300 0 0 0 4162800 3890800 5150800 0 0 0 4252200 7286500 6937000 0 0 0 1305 675 1267 25750;25751;25752;25753;25754;25755;25756;25757;25758;25759 16061;16062 16061 0 ALEVADK Unmodified 744.40177 0.4017693 211 P09372 grpE Protein GrpE yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.61 13.225 2 0.0057321 3718 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.418 48.298 4481900000 310390000 292960000 320790000 8307100 6212200 7059500 531480000 6761000 501440000 31178000 28282000 32706000 373610000 405760000 319670000 5436500 5090600 5477200 481110000 397430000 380090000 9006400 10434000 11253000 1306 211 1268 25760;25761;25762;25763;25764;25765;25766;25767;25768;25769;25770;25771;25772;25773;25774;25775;25776;25777;25778;25779;25780;25781;25782;25783 16063;16064;16065;16066;16067;16068;16069;16070;16071;16072;16073 16066 11 ALEVADKANPDMSAMVEGIELTLK Unmodified 2544.2815 0.2815261 211 P09372 grpE Protein GrpE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 53.183 51.916 3 3.5006E-15 20860 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 142.41 141.1 175440000 0 0 0 10769000 8610100 9680300 0 0 0 37757000 29365000 27954000 0 0 0 0 0 7676000 0 7277800 0 13854000 12532000 9962000 1307 211 1269 25784;25785;25786;25787;25788;25789;25790;25791;25792;25793;25794 16074;16075;16076;16077;16078;16079;16080;16081;16082;16083 16076 10 ALEVFFISGK Unmodified 1109.6121 0.61209643 1118 P16384 miaA tRNA dimethylallyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.275 44.785 2 0.065419 20848 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 50.834 47.98 58447000 7189600 5555400 4830900 0 0 0 4124900 3097800 2179000 0 0 0 3610600 2899300 4120600 0 0 0 7614000 6440800 6784300 0 0 0 1308 1118 1270 25795;25796;25797;25798;25799;25800;25801;25802;25803;25804;25805;25806 16084 16084 0 ALEVGYR Unmodified 806.42865 0.42865276 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 1 1 1 1 1 17.843 18.466 2 0.0012721 6807 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.94 76.431 1107600000 128820000 131980000 127710000 703820 561630 0 304550000 154710000 137070000 0 0 0 23414000 0 22929000 0 0 0 0 37575000 37594000 0 0 0 1309 1960 1271 25807;25808;25809;25810;25811;25812;25813;25814;25815;25816;25817;25818;25819;25820;25821;25822;25823 16085;16086;16087;16088;16089 16087 5 ALEWEILK Unmodified 1000.5593 0.55933258 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.349 40.65 2 0.0019937 20259 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 104.21 90.537 337060000 35479000 38929000 37666000 631480 0 460770 20123000 20441000 16527000 0 0 0 23645000 22114000 19944000 0 0 0 34653000 32940000 33504000 0 0 0 1310 623 1272 25824;25825;25826;25827;25828;25829;25830;25831;25832;25833;25834;25835;25836;25837 16090;16091;16092;16093;16094;16095;16096;16097;16098;16099 16091 10 ALEWLDVQPEDR Unmodified 1469.7151 0.71505795 1612 P55135 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD yes yes 0 0 0 By MS/MS 1 42.813 42.813 2 9.3819E-05 16054 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 131.28 114.26 3234300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3234300 0 0 0 0 0 0 0 0 1311 1612 1273 25838 16100 16100 0 ALFATGNFEDVR Unmodified 1338.6568 0.65681479 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.004 36.546 2 7.3848E-07 13343 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 153.05 147.84 109890000 24921000 23556000 0 3336800 3374000 3327300 0 0 0 11775000 11075000 9271700 0 0 0 5211000 3163500 3323800 0 0 0 0 7559200 0 1312 486 1274 25839;25840;25841;25842;25843;25844;25845;25846;25847;25848;25849;25850 16101;16102;16103;16104;16105;16106;16107;16108;16109;16110 16101 8 ALFDQVLPAER Unmodified 1257.6717 0.67173657 1892 P77285 rsxG Electron transport complex subunit RsxG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 41.702 39.944 2 0.00020351 19495 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.05 93.524 26642000 0 0 0 838270 676030 801960 0 0 0 0 0 0 0 0 0 0 0 0 7187600 6425700 7116700 0 1434400 2161200 1313 1892 1275 25851;25852;25853;25854;25855;25856;25857;25858 16111 16111 1 ALFEDSAMSQQPTVPDR Unmodified 1890.8782 0.87817689 1297 P27278 nadR Trifunctional NAD biosynthesis/regulator protein NadR;Transcriptional regulator NadR;Nicotinamide mononucleotide adenylyltransferase;Ribosylnicotinamide kinase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 35.43 34.091 2 1.1288E-08 16411 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.46 114.73 16404000 6894400 4586800 4922800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1314 1297 1276 25859;25860;25861 16112 16112 1 ALFGDNTTK Unmodified 965.48181 0.48181054 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.739 19.31 2 0.00063208 7320 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 105.25 97.018 293580000 32208000 31427000 26675000 0 288390 0 17276000 21081000 16559000 0 0 0 21882000 19794000 14594000 0 0 0 34309000 29024000 28459000 0 0 0 1315 623 1277 25862;25863;25864;25865;25866;25867;25868;25869;25870;25871;25872;25873;25874 16113;16114 16113 2 ALFQLDPER Unmodified 1087.5662 0.56620887 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.858 35.045 2 0.0020065 16814 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 101.28 74.682 156160000 20601000 20624000 14698000 5230800 6509000 5109100 5418600 0 0 2815500 2046400 1831500 7790800 9875700 8545200 0 0 0 12403000 13750000 10816000 2721900 2472600 2904200 1316 335 1278 25875;25876;25877;25878;25879;25880;25881;25882;25883;25884;25885;25886;25887;25888;25889;25890;25891;25892;25893 16115;16116;16117;16118;16119;16120;16121;16122;16123;16124;16125;16126 16118 12 ALFSGGEETKPTEQPAPK Unmodified 1885.9422 0.94215736 1183 P21513 rne Ribonuclease E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.509 18.927 3 1.3341E-07 7264 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.22 105.01 412580000 42132000 48937000 37015000 11611000 9278400 11069000 21350000 23434000 22704000 8347200 6360000 6553400 21085000 18012000 11705000 0 0 0 37307000 31524000 34957000 3285200 3363000 2546700 1317 1183 1279 25894;25895;25896;25897;25898;25899;25900;25901;25902;25903;25904;25905;25906;25907;25908;25909;25910;25911;25912;25913;25914 16127;16128;16129;16130;16131;16132;16133;16134;16135;16136;16137;16138;16139;16140;16141;16142;16143;16144;16145 16131 19 ALFSSVR Unmodified 778.43374 0.43373813 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 21.904 21.951 2 0.0023399 9327 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.02 97.916 383210000 58421000 56639000 44746000 0 1527300 0 71372000 60234000 58580000 0 0 0 5431400 4622700 4006200 0 0 0 5205400 7302900 5125100 0 0 0 1318 1831 1280 25915;25916;25917;25918;25919;25920;25921;25922;25923;25924;25925;25926;25927 16146;16147;16148;16149 16146 1 ALGADEVVNSR Unmodified 1129.5728 0.57275081 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 18.47 19.068 2 1.9764E-07 7199 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.16 154.11 1804500000 644050000 598580000 561850000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1319 1762 1281 25928;25929;25930 16150;16151;16152 16150 1 ALGAKPQINAEEEIR Unmodified 1637.8737 0.87368386 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 1 2 20.454 20.87 2;3 1.6314E-07 8543 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.77 116.65 572720000 55841000 52643000 47245000 0 0 0 69176000 67079000 74201000 0 0 0 29786000 29606000 26337000 0 0 0 44379000 32854000 43575000 0 0 0 1320 1154 1282 25931;25932;25933;25934;25935;25936;25937;25938;25939;25940;25941;25942;25943;25944;25945;25946;25947;25948;25949;25950;25951;25952;25953 16153;16154;16155;16156;16157;16158;16159;16160 16153 5 ALGAKPQINAEEEIRR Unmodified 1793.9748 0.97479489 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 16.975 17.74 3;4 8.6147E-14 6392 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 168.5 166.19 1376400000 113700000 131660000 105400000 2419100 825620 0 197370000 185080000 169030000 0 0 0 54646000 52150000 56702000 0 0 0 110190000 101770000 95456000 0 0 0 1321 1154 1283 25954;25955;25956;25957;25958;25959;25960;25961;25962;25963;25964;25965;25966;25967;25968;25969;25970;25971;25972;25973;25974;25975;25976;25977;25978;25979;25980 16161;16162;16163;16164;16165;16166;16167;16168;16169;16170;16171;16172;16173;16174;16175;16176;16177;16178;16179;16180;16181;16182 16167 22 ALGANLVLTEGAK Unmodified 1255.7136 0.71360139 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 2 4 1 1 1 3 3 3 1 1 1 3 2 2 1 1 1 1 1 1 1 34.067 32.5 2 3.5193E-12 15065 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.71 142.44 12539000000 1287800000 1173200000 1078000000 9908200 9407400 9124500 1462400000 1275700000 1237000000 5347800 6013300 5976600 750580000 746940000 713880000 0 0 2574200 880250000 995970000 874590000 5805300 4067600 4090100 1322 666 1284 25981;25982;25983;25984;25985;25986;25987;25988;25989;25990;25991;25992;25993;25994;25995;25996;25997;25998;25999;26000;26001;26002;26003;26004;26005;26006;26007;26008;26009;26010;26011;26012;26013;26014;26015;26016;26017;26018;26019 16183;16184;16185;16186;16187;16188;16189;16190;16191;16192;16193;16194;16195;16196;16197;16198;16199;16200;16201;16202;16203;16204;16205;16206;16207;16208;16209;16210;16211;16212;16213;16214;16215;16216 16190 31 ALGASSILVLPIEK Unmodified 1409.8494 0.84936659 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.595 48.213 2 5.4934E-07 23369 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.76 128.24 455720000 68028000 59686000 48486000 2123900 2395600 2180200 39182000 37952000 33792000 0 0 0 26357000 23696000 24424000 0 0 0 29151000 29902000 28367000 0 0 0 1323 1632 1285 26020;26021;26022;26023;26024;26025;26026;26027;26028;26029;26030;26031;26032;26033;26034 16217;16218;16219;16220;16221 16219 5 ALGCHSIDR Unmodified 1027.4869 0.48691269 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.444 12.276 2 7.1975E-16 3180 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 231.73 204.93 3079500000 25011000 28075000 32541000 0 0 0 501610000 512310000 504720000 0 0 0 263590000 259110000 260070000 0 0 0 235090000 247280000 210060000 0 0 0 1324 654 1286 26035;26036;26037;26038;26039;26040;26041;26042;26043;26044;26045;26046 16222;16223;16224;16225;16226;16227;16228;16229;16230;16231;16232;16233 16223 12 ALGDIPESHILTVSSFYR Unmodified 2004.0316 0.031641064 1279 P26281 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.517 44.078 3 4.7046E-07 21435 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.02 95.272 262560000 33845000 37205000 35537000 0 0 0 11630000 10633000 15098000 0 0 0 20517000 17448000 13448000 0 0 0 18956000 25652000 22589000 0 0 0 1325 1279 1287 26047;26048;26049;26050;26051;26052;26053;26054;26055;26056;26057;26058 16234;16235;16236;16237 16236 4 ALGDQHSLQDVK Unmodified 1309.6626 0.66262845 199 P09099 xylB Xylulose kinase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 14.706 15.492 2 0.00071156 5319 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.335 72.377 22358000 0 6090800 0 0 0 0 4304100 0 4390000 0 0 0 2446900 2331300 0 0 0 0 0 2794400 0 0 0 0 1326 199 1288 26059;26060;26061;26062;26063;26064;26065;26066 16238;16239;16240 16238 3 ALGEDSYR Unmodified 909.41921 0.41921028 580 P0AA95 yacC Uncharacterized protein YacC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 13.498 14.345 2 0.026985 4225 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 65.777 52.225 42526000 4097500 4492700 0 0 0 0 0 6128000 3799000 0 0 0 4697800 0 0 0 0 0 8135100 5015400 6160100 0 0 0 1327 580 1289 26067;26068;26069;26070;26071;26072;26073;26074;26075 16241;16242;16243;16244;16245 16245 4 ALGEFTITLDCDVLQADGGTR Unmodified 2251.0791 0.079061542 1049 P0CG19 rph Inactive ribonuclease PH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 53.406 51.971 2 0.026145 20742 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 53.828 48.75 16359000 0 0 0 0 0 0 0 0 0 3450400 1745900 1846300 0 0 0 0 0 0 2925800 0 0 3195200 1833000 1362800 1328 1049 1290 26076;26077;26078;26079;26080;26081;26082 16246 16246 0 ALGELAR Unmodified 728.41809 0.41808807 1753 P69853 dmsD Tat proofreading chaperone DmsD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 16.436 16.571 2 0.085707 4684 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 56.51 8.2684 70381000 0 0 0 0 0 0 0 0 0 8559700 7500400 7236000 0 0 16053000 7104200 7222900 9615600 0 0 0 3594600 3494400 0 1329 1753 1291 26083;26084;26085;26086;26087;26088;26089;26090;26091 16247;16248;16249 16249 3 ALGEYLEKR Unmodified 1077.5819 0.58185893 269 P0A6P7 engB Probable GTP-binding protein EngB yes yes 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 18.319 18.226 3 0.08386 4974 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 29.743 20.881 11160000 0 0 0 0 0 0 0 0 0 2337100 2396300 2254500 0 0 0 0 2026200 0 0 0 0 0 2145800 0 1330 269 1292 26092;26093;26094;26095;26096 16250 16250 1 ALGGASGGYTAAR Unmodified 1150.5731 0.57308516 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 14.141 14.933 2 4.2932E-09 4825 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 171.85 136.41 2688400000 211270000 195650000 172090000 0 0 0 279860000 289490000 268750000 1648000 0 0 188470000 187840000 179500000 0 0 0 255740000 222700000 235420000 0 0 0 1331 635 1293 26097;26098;26099;26100;26101;26102;26103;26104;26105;26106;26107;26108;26109 16251;16252;16253;16254;16255;16256;16257;16258;16259;16260;16261;16262 16257 10 ALGGGFPVGALLATEECAR Unmodified 1887.9513 0.95128225 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 51.656 50.43 2;3 1.07E-29 24441 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 220.53 217.76 1345200000 454850000 420530000 454340000 3269500 3169900 2121100 0 0 0 0 0 0 0 0 0 0 0 0 3179800 0 3709500 0 0 0 1332 1919 1294 26110;26111;26112;26113;26114;26115;26116;26117;26118;26119;26120;26121;26122;26123 16263;16264;16265;16266;16267;16268 16267 6 ALGGLDIMALVAGK Unmodified 1327.7534 0.75335771 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.915 53.436 2 9.6704E-06 26424 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 133.81 109.72 673110000 161240000 150810000 139400000 0 0 0 61035000 56185000 62654000 0 0 0 5557800 0 5252300 0 0 0 7739800 11886000 11354000 0 0 0 1333 995 1295 26124;26125;26126;26127;26128;26129;26130;26131;26132;26133;26134 16269;16270;16271;16272 16271 4 ALGHAGDVLLAISTR Unmodified 1492.8362 0.83617614 1707 P66817 diaA DnaA initiator-associating protein DiaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 36.964 35.137 2;3 6.2517E-09 16277 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 102.9 102.9 338060000 22309000 21515000 25803000 4079400 3380700 3332500 25101000 27962000 25874000 13002000 11025000 11139000 18619000 20668000 17568000 0 0 0 24053000 25516000 23574000 4152500 4755800 4629900 1334 1707 1296 26135;26136;26137;26138;26139;26140;26141;26142;26143;26144;26145;26146;26147;26148;26149;26150;26151;26152;26153;26154;26155;26156;26157;26158;26159;26160;26161;26162;26163;26164;26165;26166;26167;26168;26169;26170;26171;26172;26173;26174;26175;26176 16273;16274;16275;16276;16277;16278;16279;16280;16281;16282;16283;16284;16285;16286;16287 16285 11 ALGHGDGK Unmodified 753.37695 0.37695154 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 2 2 2 2 2 2 2 1 4.9138 5.7508 2 0.0064759 803 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 84.916 30.129 3028800000 75434000 79633000 74587000 0 0 0 97680000 133560000 133040000 0 0 0 409310000 391330000 350620000 0 0 0 425050000 431440000 426760000 0 364170 0 1335 257 1297 26177;26178;26179;26180;26181;26182;26183;26184;26185;26186;26187;26188;26189;26190;26191;26192;26193;26194;26195;26196 16288;16289;16290 16289 3 ALGHPVMINYLK Unmodified 1354.7431 0.74312738 1104 P15067 glgX Glycogen debranching enzyme yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.282 28.007 3 0.022958 13284 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 32.127 28.904 118930000 0 17146000 17288000 0 0 0 14227000 10621000 8272300 0 0 0 7311600 7968900 10755000 0 0 0 7465900 8185600 9687900 0 0 0 1336 1104 1298 26197;26198;26199;26200;26201;26202;26203;26204;26205;26206;26207 16291;16292 16291 0 ALGIDAR Unmodified 714.40244 0.40243801 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.284 17.148 2 0.0015084 6033 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.75 29.244 3373600000 69952000 69573000 63596000 1030000 1121400 1329700 601480000 683850000 638070000 0 0 0 107430000 90216000 82939000 0 0 0 360830000 288990000 313190000 0 0 0 1337 669 1299 26208;26209;26210;26211;26212;26213;26214;26215;26216;26217;26218;26219;26220;26221;26222 16293;16294;16295;16296 16295 4 ALGIELLR Unmodified 883.5491 0.54910224 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.727 38.111 2 1.175E-05 15108 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 178.65 116.31 408250000 45291000 39812000 38054000 3961500 4767900 3533300 36782000 26291000 24703000 17788000 14833000 18257000 17946000 18034000 16801000 4183500 2595300 4288300 19871000 20977000 17549000 4259000 4389600 3277800 1338 658 1300 26223;26224;26225;26226;26227;26228;26229;26230;26231;26232;26233;26234;26235;26236;26237;26238;26239;26240;26241;26242;26243;26244;26245;26246 16297;16298;16299;16300;16301;16302;16303;16304;16305;16306;16307;16308;16309;16310;16311;16312;16313;16314;16315;16316 16300 19 ALGIPTVMGADIQPSVLHR Unmodified 1974.0721 0.072066091 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.146 43.452 3 8.0578E-10 20999 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.56 111.01 202150000 24801000 23673000 27491000 0 0 0 11262000 9103200 12196000 3760800 5247000 3812900 8429900 8038300 9877700 0 0 0 16513000 15971000 14951000 1970600 2462100 2593400 1339 1459 1301 26247;26248;26249;26250;26251;26252;26253;26254;26255;26256;26257;26258;26259;26260;26261;26262;26263;26264 16317;16318;16319;16320;16321;16322;16323;16324;16325;16326;16327;16328 16325 12 ALGISEHVTLELNSIGSLEAR Unmodified 2208.175 0.17501084 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 46.601 45.153 3 3.6512E-05 21942 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.776 80.538 45371000 0 0 6580900 1461100 1421000 0 0 5618000 7746800 0 0 0 3406200 3225100 0 0 0 0 4588000 5137900 6186200 0 0 0 1340 1634 1302 26265;26266;26267;26268;26269;26270;26271;26272;26273;26274 16329 16329 1 ALGLNDELAHSSIR Unmodified 1494.7791 0.77905519 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 1 27.8 26.495 2;3 7.6613E-20 12044 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.62 163.67 5810700000 781190000 670070000 605860000 21991000 20943000 20199000 451940000 400220000 390310000 10104000 10340000 10568000 315290000 342540000 270740000 0 0 0 510930000 445580000 475520000 22315000 17607000 16483000 1341 228 1303 26275;26276;26277;26278;26279;26280;26281;26282;26283;26284;26285;26286;26287;26288;26289;26290;26291;26292;26293;26294;26295;26296;26297;26298;26299;26300;26301;26302;26303;26304;26305;26306;26307;26308;26309;26310;26311;26312 16330;16331;16332;16333;16334;16335;16336;16337;16338;16339;16340;16341;16342;16343;16344;16345;16346;16347;16348;16349;16350;16351;16352;16353;16354;16355;16356;16357;16358;16359;16360;16361 16342 30 ALGMAVVAMGGGR Oxidation (M) 1204.6056 0.60564762 167 P07650 deoA Thymidine phosphorylase yes yes 0 1 0 By MS/MS By MS/MS 1 1 26.915 25.312 2 0.023114 11785 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 54.416 45.554 6013200 0 0 0 0 0 0 6013200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1342 167 1304 26313;26314 16362;16363 16362 51 2 ALGMAVVAMGGGR Unmodified 1188.6107 0.610733 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.471 33.023 2 4.3536E-09 15651 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 171.73 162.79 1453300000 80393000 66379000 61747000 0 0 0 172430000 166490000 159820000 0 0 0 137870000 134250000 121350000 0 0 0 115020000 117320000 120270000 0 0 0 1343 167 1304 26315;26316;26317;26318;26319;26320;26321;26322;26323;26324;26325;26326 16364;16365;16366;16367;16368;16369 16366 6 ALGMLAVDNQAR Unmodified 1257.65 0.64995528 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.101 28.484 2 0.0010714 11128 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 76.465 54.379 87670000 0 0 3139200 1668200 0 2118900 6621100 6997900 7511700 2720800 1944400 2331900 5547700 6442300 7238400 0 0 0 8058600 8519300 9987200 2094900 2329100 2398300 1344 1393 1305 26327;26328;26329;26330;26331;26332;26333;26334;26335;26336;26337;26338;26339;26340;26341;26342;26343;26344 16370;16371;16372 16370 3 ALGSPIR Unmodified 712.42317 0.42317345 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.544 16.171 2 0.0012721 5419 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 132.94 112.59 1669900000 114720000 133080000 139000000 2227900 1887700 1905900 144410000 144540000 133500000 2284600 1939000 1849400 121010000 89685000 110980000 0 0 0 185500000 158580000 174250000 2706200 2761300 3109400 1345 29 1306 26345;26346;26347;26348;26349;26350;26351;26352;26353;26354;26355;26356;26357;26358;26359;26360;26361;26362;26363;26364;26365 16373;16374;16375;16376;16377;16378;16379;16380;16381;16382;16383;16384 16378 11 ALGTIGHIGCFSFHETK Unmodified 1873.9145 0.91450282 1310 P27833 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 30.934 29.404 3;4 1.1757E-10 14119 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.63 96.355 566920000 38849000 34746000 29204000 2535400 1115000 3343400 49371000 49429000 48045000 0 3652000 4109600 47586000 43462000 24012000 0 0 0 66911000 60097000 52215000 3882200 2354400 2000100 1346 1310 1307 26366;26367;26368;26369;26370;26371;26372;26373;26374;26375;26376;26377;26378;26379;26380;26381;26382;26383;26384;26385;26386;26387;26388;26389;26390;26391;26392;26393;26394;26395;26396;26397;26398;26399;26400;26401;26402 16385;16386;16387;16388;16389;16390;16391;16392;16393;16394;16395;16396;16397 16386 13 ALGVGEVK Unmodified 771.44905 0.44905385 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 2 2 2 2 2 2 1 1 1 3 3 2 15.838 16.593 1;2 0.0024747 5413 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 100.19 42.907 10499000000 950700000 991600000 848780000 3288500 2730600 4162800 806780000 800900000 769540000 0 0 0 986490000 866800000 789670000 938210 700400 847240 893990000 924360000 856940000 0 0 0 1347 271 1308 26403;26404;26405;26406;26407;26408;26409;26410;26411;26412;26413;26414;26415;26416;26417;26418;26419;26420;26421;26422;26423;26424;26425;26426;26427;26428;26429;26430;26431;26432;26433;26434;26435 16398;16399;16400;16401;16402;16403;16404;16405;16406;16407;16408;16409;16410;16411;16412 16409 12 ALGVTFFLPEGDAISASR Unmodified 1849.9574 0.95741349 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 53.902 52.464 2 2.3637E-22 25556 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 191.79 184.42 589570000 38996000 36003000 32637000 24061000 28347000 25278000 101760000 111400000 0 75360000 30210000 0 0 0 0 0 0 0 0 0 0 32807000 26199000 26516000 1348 595 1309 26436;26437;26438;26439;26440;26441;26442;26443;26444;26445;26446;26447;26448 16413;16414;16415 16415 3 ALGWKPQETFESGIR Unmodified 1717.8788 0.87876924 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 32.587 31.234 2;3 1.2972E-14 14970 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.71 161.32 3212600000 103890000 106450000 100910000 634940 0 464510 260270000 239010000 256390000 0 0 0 279170000 279160000 248090000 0 0 0 446420000 448350000 443410000 0 0 0 1349 1496 1310 26449;26450;26451;26452;26453;26454;26455;26456;26457;26458;26459;26460;26461;26462;26463;26464;26465;26466;26467;26468;26469;26470;26471;26472;26473;26474 16416;16417;16418;16419;16420;16421;16422;16423;16424;16425;16426;16427;16428;16429;16430 16419 15 ALHDENVVWHSHPVTVQQR Unmodified 2251.1246 0.12464702 251 P0A6J1 cysC Adenylyl-sulfate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 2 1 3 3 3 1 1 3 3 3 2 2 2 3 3 3 1 17.68 18.237 3;4;5 1.3599E-17 6656 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 161.35 152.07 988390000 78737000 79497000 50724000 1219900 3858100 1702100 73779000 84183000 72806000 2126100 2156700 0 65407000 55547000 61310000 3682900 4358400 3572400 98073000 116350000 126400000 0 0 2898200 1350 251 1311 26475;26476;26477;26478;26479;26480;26481;26482;26483;26484;26485;26486;26487;26488;26489;26490;26491;26492;26493;26494;26495;26496;26497;26498;26499;26500;26501;26502;26503;26504;26505;26506;26507;26508;26509;26510;26511;26512;26513;26514;26515;26516;26517;26518;26519;26520;26521;26522;26523 16431;16432;16433;16434;16435;16436;16437;16438;16439;16440;16441;16442;16443;16444;16445;16446;16447;16448;16449;16450 16443 20 ALHEANAVGQVAGGVPAMCDGVTQGQDGMELSLLSR Unmodified 3637.7287 0.72869924 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 47.169 45.73 3 7.7865E-29 22556 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159.2 155.97 167290000 0 0 0 0 0 0 26995000 24785000 18015000 0 0 0 20062000 15668000 18491000 0 0 0 0 25444000 17831000 0 0 0 1351 785 1312 26524;26525;26526;26527;26528;26529;26530;26531 16451;16452;16453;16454;16455;16456 16453 6 ALHFGAGNIGR Unmodified 1111.5887 0.58867565 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 3 3 3 1 2 2 3 3 3 1 2 2 2 1 2 1 18.783 19.196 2;3 1.8335E-10 8125 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 149.72 133.84 2912000000 186180000 166340000 158760000 616160 0 932250 437460000 440520000 413620000 4552900 5827400 3478600 249420000 220190000 167380000 0 1979100 0 150600000 137690000 147940000 7653900 6762000 4077400 1352 214 1313 26532;26533;26534;26535;26536;26537;26538;26539;26540;26541;26542;26543;26544;26545;26546;26547;26548;26549;26550;26551;26552;26553;26554;26555;26556;26557;26558;26559;26560;26561;26562;26563;26564;26565;26566;26567;26568;26569;26570;26571;26572;26573;26574;26575;26576 16457;16458;16459;16460;16461;16462;16463;16464;16465;16466;16467;16468;16469;16470;16471;16472;16473;16474;16475;16476;16477;16478;16479;16480 16457 24 ALHFGTLTIDPINR Unmodified 1566.8518 0.85182621 1605 P52108 rstA Transcriptional regulatory protein RstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 2 2 2 1 2 1 2 2 2 1 1 2 2 2 1 1 1 41.841 40.109 2;3 2.5139E-11 20091 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 137.16 135.32 623530000 36187000 34806000 28507000 2192700 2013700 2360700 44843000 53412000 45875000 8266000 7766300 9592500 49180000 42868000 41803000 0 4467900 6419900 53480000 71412000 66067000 4415700 3752800 3842900 1353 1605 1314 26577;26578;26579;26580;26581;26582;26583;26584;26585;26586;26587;26588;26589;26590;26591;26592;26593;26594;26595;26596;26597;26598;26599;26600;26601;26602;26603;26604;26605;26606;26607;26608;26609;26610 16481;16482;16483;16484;16485;16486;16487;16488;16489;16490;16491;16492;16493;16494;16495;16496;16497;16498;16499;16500 16485 19 ALHNEHR Unmodified 875.4362 0.43619775 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 6.0257 6.7582 2 0.0035119 1136 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.67 83.701 28202000 10688000 10060000 7453900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1354 1814 1315 26611;26612;26613 16501;16502;16503 16501 3 ALHPFGGINMIK Unmodified 1296.7013 0.70126256 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.68 30.443 3 0.00067051 13683 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.03 65.567 65494000 0 1675500 1508100 0 0 0 5917000 6329200 6048400 0 0 0 9104800 9181600 11735000 0 5134500 0 2997900 5861500 0 0 0 0 1355 1559 1316 26614;26615;26616;26617;26618;26619;26620;26621;26622;26623;26624 16504;16505 16504 2 ALHQAAAGEMVLSEALTPVLAASLR Unmodified 2518.3577 0.35774301 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 2 1 3 3 3 1 1 1 3 3 3 1 2 1 3 3 3 1 1 53.681 52.368 2;3;4 2.2221E-72 25544 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 290.92 278.54 2771500000 436000000 384270000 391610000 12941000 15370000 11350000 249280000 240380000 209270000 11228000 5863900 9131800 119240000 121590000 108960000 3946200 6376600 7145500 142400000 154080000 122310000 5388300 0 3340200 1356 908 1317 26625;26626;26627;26628;26629;26630;26631;26632;26633;26634;26635;26636;26637;26638;26639;26640;26641;26642;26643;26644;26645;26646;26647;26648;26649;26650;26651;26652;26653;26654;26655;26656;26657;26658;26659;26660;26661;26662;26663;26664;26665;26666;26667;26668;26669;26670;26671;26672;26673 16506;16507;16508;16509;16510;16511;16512;16513;16514;16515;16516;16517;16518;16519;16520;16521;16522;16523;16524;16525;16526;16527;16528;16529;16530;16531;16532;16533;16534 16530 29 ALHSDPVEAWASIIEDADK Unmodified 2065.9956 0.99564949 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.985 51.638 3 2.2812E-10 25147 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.11 124.31 897880000 25014000 24831000 23035000 3606900 0 0 59948000 52888000 59327000 15663000 10817000 15276000 61116000 57664000 64214000 0 0 2596100 88372000 100850000 106060000 38501000 52186000 35913000 1357 205 1318 26674;26675;26676;26677;26678;26679;26680;26681;26682;26683;26684;26685;26686;26687;26688;26689;26690;26691;26692;26693 16535;16536;16537;16538;16539;16540;16541;16542;16543;16544;16545;16546;16547 16545 12 ALHSDPVEAWASIIEDADKAK Unmodified 2265.1277 0.12772629 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 2 1 2 2 2 49.337 47.875 3;4 1.3885E-10 18969 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 126.69 123.5 387940000 0 0 0 7169900 6265900 7322100 0 0 0 8648000 23533000 17788000 0 0 0 0 0 0 0 0 0 115800000 102690000 98724000 1358 205 1319 26694;26695;26696;26697;26698;26699;26700;26701;26702;26703;26704;26705;26706;26707;26708;26709 16548;16549;16550 16549 3 ALHVGEAPNMVVCWGGHSINENEYLYAR Unmodified 3185.4811 0.48112239 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.503 39.793 4 4.1462E-41 19362 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 205.38 200.17 376990000 41461000 37375000 34380000 0 0 516900 29117000 33507000 23717000 0 0 0 23676000 21904000 27867000 0 0 0 35555000 34389000 32114000 1414000 0 0 1359 801 1320 26710;26711;26712;26713;26714;26715;26716;26717;26718;26719;26720;26721;26722;26723 16551;16552;16553;16554;16555;16556 16551 6 ALIAQEPLLGAK Unmodified 1222.7285 0.72852317 1568 P45464 lpoA Penicillin-binding protein activator LpoA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 35.703 33.721 2 9.8405E-05 13243 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 115.71 112.6 46684000 0 0 5773200 1327800 1725800 1899500 4836200 5106800 4266800 4709200 4108500 5372600 0 0 0 0 0 0 0 0 0 2544900 2153600 2859000 1360 1568 1321 26724;26725;26726;26727;26728;26729;26730;26731;26732;26733;26734;26735;26736 16557;16558;16559;16560 16558 4 ALIDAAR Unmodified 728.41809 0.41808807 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 2 2 2 2 1 1 1 1 1 1 2 1 2 1 1 1 15.037 15.536 2 0.00023343 5015 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 163.34 57.056 9638700000 102700000 113270000 151850000 0 0 3389000 152570000 53948000 144920000 1610900000 1514300000 963530000 38262000 111990000 30000000 1166000000 1065000000 1135500000 138450000 46721000 130590000 402630000 305960000 256310000 1361 1616 1322 26737;26738;26739;26740;26741;26742;26743;26744;26745;26746;26747;26748;26749;26750;26751;26752;26753;26754;26755;26756;26757;26758;26759;26760;26761;26762;26763;26764;26765;26766;26767 16561;16562;16563;16564;16565;16566;16567;16568;16569;16570;16571;16572 16563 12 ALIDAARNEADEK Unmodified 1414.7052 0.70522155 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 17.954 17.968 3 0.018073 4999 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 34.685 25.617 12086000 0 0 0 0 0 0 0 0 0 0 496440 671900 0 0 0 1769300 2647600 3188600 0 0 0 1470800 1841300 0 1362 1616 1323 26768;26769;26770;26771;26772;26773;26774 16573;16574 16574 2 ALIEDSVSR Unmodified 988.51892 0.51892433 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.42 19.902 2 5.5819E-05 5701 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 147.52 138.57 510490000 61135000 0 48935000 66999000 66302000 65781000 33304000 33462000 30576000 0 0 0 17297000 17218000 14683000 0 0 0 13878000 21889000 19028000 0 0 0 1363 151 1324 26775;26776;26777;26778;26779;26780;26781;26782;26783;26784;26785;26786;26787;26788 16575;16576;16577 16575 3 ALIGFAGPR Unmodified 900.51814 0.51813647 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.101 29.707 2 1.0315E-05 11797 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 166.34 132.6 2886600000 206230000 214050000 168310000 11770000 11121000 9135100 204910000 218680000 216090000 45841000 36451000 34650000 194560000 186380000 172430000 20175000 11740000 13454000 259790000 241050000 263300000 40469000 49834000 56191000 1364 547 1325 26789;26790;26791;26792;26793;26794;26795;26796;26797;26798;26799;26800;26801;26802;26803;26804;26805;26806;26807;26808;26809;26810;26811;26812 16578;16579;16580;16581;16582;16583;16584;16585;16586;16587;16588;16589;16590;16591;16592;16593;16594;16595;16596;16597;16598;16599;16600;16601 16581 24 ALIHDVPEEYAIHK Unmodified 1633.8464 0.84640648 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 23.926 23.036 3;4 1.3566E-06 8169 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 99.011 98.112 935480000 45369000 41712000 35879000 14273000 13390000 15292000 90471000 81278000 101540000 52380000 50341000 45205000 48325000 48908000 45287000 6633500 3479200 6448800 42306000 45542000 47911000 16539000 17854000 19113000 1365 189 1326 26813;26814;26815;26816;26817;26818;26819;26820;26821;26822;26823;26824;26825;26826;26827;26828;26829;26830;26831;26832;26833;26834;26835;26836;26837;26838;26839;26840;26841;26842;26843;26844;26845;26846;26847;26848;26849;26850;26851;26852;26853;26854;26855;26856;26857;26858;26859 16602;16603;16604;16605;16606;16607;16608;16609;16610;16611;16612;16613;16614;16615;16616;16617;16618;16619;16620;16621;16622;16623;16624;16625;16626;16627;16628;16629;16630;16631;16632;16633;16634 16610 33 ALILAELEK Unmodified 998.6012 0.60119739 1965 Q46919 yqcC Uncharacterized protein YqcC yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.64 36.967 2 0.00077595 17961 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.54 101.54 328750000 22899000 18749000 23368000 0 0 0 24774000 25361000 22329000 0 0 0 24215000 25046000 19824000 0 0 0 46748000 40435000 35006000 0 0 0 1366 1965 1327 26860;26861;26862;26863;26864;26865;26866;26867;26868;26869;26870;26871 16635;16636;16637;16638;16639;16640 16637 6 ALILEPK Unmodified 782.49019 0.49019038 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.961 23.082 2 0.013597 7385 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 83.614 79.761 863190000 146980000 125000000 105770000 30751000 32921000 36268000 24020000 29396000 28687000 22395000 22134000 21071000 25556000 27878000 22146000 3484200 3289200 3363400 42025000 36460000 35263000 12765000 13250000 12322000 1367 1935 1328 26872;26873;26874;26875;26876;26877;26878;26879;26880;26881;26882;26883;26884;26885;26886;26887;26888;26889;26890;26891;26892;26893;26894;26895 16641;16642;16643;16644;16645;16646;16647;16648;16649;16650;16651;16652;16653;16654;16655;16656;16657;16658;16659 16653 19 ALINLSLCFPER Unmodified 1431.7544 0.75442035 1243 P24205 lpxM Lipid A biosynthesis myristoyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.944 49.581 2 4.0644E-09 19820 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 178.22 128.8 24193000 0 0 0 0 0 1635600 0 0 0 0 5495200 4567000 0 3506800 0 0 0 0 0 0 0 2425700 3104700 3458200 1368 1243 1329 26896;26897;26898;26899;26900;26901;26902;26903 16660;16661;16662;16663;16664;16665 16662 6 ALIPFGGIK Unmodified 914.55894 0.55893865 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.098 38.482 2 0.0060963 19414 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 72.138 60.843 21705000000 929170000 881580000 823420000 12724000 15182000 13096000 2669400000 2742200000 2808300000 25337000 24204000 28700000 2300000000 1854600000 1850000000 19953000 13924000 15314000 1578100000 1568000000 1480100000 17134000 16112000 18598000 1369 212 1330 26904;26905;26906;26907;26908;26909;26910;26911;26912;26913;26914;26915;26916;26917;26918;26919;26920;26921;26922;26923;26924;26925;26926;26927 16666;16667;16668;16669;16670;16671;16672;16673;16674;16675;16676;16677;16678;16679;16680;16681;16682;16683;16684;16685;16686;16687;16688;16689;16690;16691;16692;16693;16694;16695;16696;16697;16698;16699;16700;16701;16702;16703;16704;16705;16706;16707;16708;16709 16673 44 ALISNPTVIGAIMVQR Unmodified 1681.9549 0.95491107 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 2 1 49.918 48.511 2;3 2.8955E-18 23626 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 183.99 181.93 2462900000 404780000 382550000 332550000 1864200 0 1547200 162030000 141720000 144150000 0 1728400 2583000 129510000 119710000 104940000 0 0 0 168230000 172440000 190510000 0 2090400 0 1370 1872 1331 26928;26929;26930;26931;26932;26933;26934;26935;26936;26937;26938;26939;26940;26941;26942;26943;26944;26945;26946;26947;26948;26949;26950;26951;26952;26953;26954;26955;26956;26957 16710;16711;16712;16713;16714;16715;16716;16717;16718;16719;16720;16721;16722;16723;16724;16725;16726;16727;16728;16729;16730;16731;16732 16716 23 ALITQDMSR Unmodified 1033.5226 0.5226295 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 21.023 20.893 2 0.00028485 8373 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 119.17 87.884 68666000 0 0 0 0 0 0 0 0 0 0 4875800 5623100 0 0 0 0 0 0 0 55661000 0 0 2506700 0 1371 806 1332 26958;26959;26960;26961 16733;16734 16734 1 ALIVMPTATADIK Unmodified 1342.753 0.75302336 98 P04968 ilvA L-threonine dehydratase biosynthetic IlvA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 40.256 38.571 2 2.6202E-05 18832 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.29 96.956 96559000 18114000 17116000 15239000 0 0 0 7176900 4925600 8207000 0 0 0 3434200 0 3872600 0 0 0 7563700 5384300 5526200 0 0 0 1372 98 1333 26962;26963;26964;26965;26966;26967;26968;26969;26970;26971;26972 16735;16736;16737;16738 16736 4 ALIVTDK Unmodified 758.4538 0.45380487 552 P0A9S1 fucO Lactaldehyde reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 16.231 17.041 2 0.076644 6147 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 58.167 40.401 114830000 13886000 15800000 10909000 0 0 0 17718000 13777000 14323000 0 0 0 6525900 0 7320600 0 0 0 3846800 5898900 4825400 0 0 0 1373 552 1334 26973;26974;26975;26976;26977;26978;26979;26980;26981;26982;26983 16739 16739 1 ALIVTDR Unmodified 786.45995 0.45995289 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.779 18.247 2 0.00043902 5647 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 154.11 47.828 5207200000 0 0 0 176750000 181140000 188830000 1011100000 1007900000 846400000 112550000 102460000 99871000 316050000 3024800 248740000 0 0 0 269990000 2209000 291480000 125700000 107330000 115640000 1374 548 1335 26984;26985;26986;26987;26988;26989;26990;26991;26992;26993;26994;26995;26996;26997;26998;26999;27000;27001 16740;16741;16742;16743;16744;16745;16746;16747;16748;16749 16740 9 ALIVTDRFLFNNGYADQITSVLK Unmodified 2597.3853 0.38533796 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 53.432 52.056 3 0.00413 18990 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 50.827 47.553 15344000 0 0 0 3695500 3471700 3468100 0 0 0 0 4708700 0 0 0 0 0 0 0 0 0 0 0 0 0 1375 548 1336 27002;27003;27004;27005 16750;16751 16750 2 ALIYMASLPEGR Unmodified 1319.6908 0.69075746 916 P0AF63 nsrR HTH-type transcriptional repressor NsrR yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 40.376 38.95 2 3.5798E-05 14360 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 111.65 109.25 31111000 7058400 8049500 0 0 0 0 0 0 0 0 855020 0 2344200 0 2039600 6036700 0 0 0 2228800 2498400 0 0 0 1376 916 1337 27006;27007;27008;27009;27010;27011;27012;27013 16752 16752 1 ALKDAVK Unmodified 743.45414 0.45413923 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.736 11.185 2 0.002765 2155 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 127.12 64.403 2416200000 0 0 0 13753000 15017000 9456800 31483000 8380600 0 172490000 141390000 179300000 0 0 14268000 739710000 432640000 336340000 0 0 0 105020000 123510000 93448000 1377 726 1338 27014;27015;27016;27017;27018;27019;27020;27021;27022;27023;27024;27025;27026;27027;27028 16753;16754;16755;16756;16757;16758;16759;16760;16761;16762;16763;16764 16759 12 ALKDAVN Unmodified 729.4021 0.40210366 727 P0ACF4 hupB DNA-binding protein HU-beta yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 3 3 3 3 3 3 2 2 2 1 1 2 3 3 3 2 2 2 3 3 3 1 2 2 11.423 12.114 1;2 0.037894 2689 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 75.189 32.189 2694400000 114630000 93185000 89082000 50329000 47394000 43555000 104700000 99469000 101990000 75203000 69823000 91884000 101950000 93174000 86675000 260630000 300690000 228310000 141690000 127180000 114270000 82344000 100510000 75745000 1378 727 1339 27029;27030;27031;27032;27033;27034;27035;27036;27037;27038;27039;27040;27041;27042;27043;27044;27045;27046;27047;27048;27049;27050;27051;27052;27053;27054;27055;27056;27057;27058;27059;27060;27061;27062;27063;27064;27065;27066;27067;27068;27069;27070;27071;27072;27073;27074;27075;27076;27077;27078;27079;27080;27081;27082;27083;27084;27085 16765;16766;16767;16768;16769;16770;16771;16772;16773;16774;16775 16768 10 ALKEPAR Unmodified 783.46029 0.46028724 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 2 1 1 1 1 1 1 10.063 10.877 2 0.0040257 2379 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 114.19 77.629 1099200000 118010000 114340000 128290000 0 0 0 24569000 22779000 28373000 0 0 0 121370000 109490000 87369000 0 0 0 117950000 109990000 116640000 0 0 0 1379 321 1340 27086;27087;27088;27089;27090;27091;27092;27093;27094;27095;27096;27097;27098 16776;16777;16778;16779;16780;16781;16782;16783;16784;16785;16786 16786 9 ALKEPARPMVAIVGGSK Oxidation (M) 1738.9764 0.97637479 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 1 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 3 2 2 1 3 1 2 1 2 1 2 18.457 19.04 3;4 0.00065855 6452 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 65.231 65.231 378010000 23413000 41888000 24744000 0 0 0 96479000 27036000 84525000 0 0 0 8803400 17351000 5875400 0 0 0 16473000 13591000 17828000 0 0 0 1380 321 1341 27099;27100;27101;27102;27103;27104;27105;27106;27107;27108;27109;27110;27111;27112;27113;27114;27115;27116;27117;27118;27119;27120 16787;16788;16789;16790;16791;16792;16793;16794;16795;16796;16797 16797 145 11 ALKEPARPMVAIVGGSK Unmodified 1722.9815 0.98146017 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 3 2 2 2 3 3 3 1 1 3 3 4 3 3 3 1 20.553 20.919 2;3;4 2.3412E-19 8092 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 213.83 204.34 19757000000 1671900000 1791500000 1516200000 11940000 12367000 11993000 2098700000 2383800000 2400500000 5286800 5594400 0 1140600000 1171400000 1098700000 0 0 0 1404500000 1475100000 1554000000 0 0 2705600 1381 321 1341 27121;27122;27123;27124;27125;27126;27127;27128;27129;27130;27131;27132;27133;27134;27135;27136;27137;27138;27139;27140;27141;27142;27143;27144;27145;27146;27147;27148;27149;27150;27151;27152;27153;27154;27155;27156;27157;27158;27159;27160;27161;27162;27163;27164;27165;27166;27167 16798;16799;16800;16801;16802;16803;16804;16805;16806;16807;16808;16809;16810;16811;16812;16813;16814;16815;16816;16817;16818;16819;16820;16821;16822;16823;16824;16825;16826;16827;16828;16829;16830;16831;16832;16833;16834;16835;16836 16827 39 ALKEPENYDVR Unmodified 1332.6674 0.66737948 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 14.348 15.128 2;3 7.2184E-05 4701 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 110.84 106.66 1354800000 98089000 82312000 83512000 803720 0 988670 177620000 173680000 157000000 0 0 0 98716000 88225000 90957000 0 0 0 88937000 106600000 107340000 0 0 0 1382 1959 1342 27168;27169;27170;27171;27172;27173;27174;27175;27176;27177;27178;27179;27180;27181;27182;27183;27184;27185;27186;27187;27188;27189;27190;27191;27192;27193 16837;16838;16839;16840;16841;16842;16843;16844;16845;16846;16847 16845 11 ALKPLGR Unmodified 753.48611 0.48610806 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.942 12.614 2 0.020591 2946 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 85.306 62.684 478080000 17794000 13395000 13713000 4187000 3965900 4011100 52372000 41495000 43540000 38387000 33324000 27945000 21087000 26402000 21146000 4822400 0 0 22973000 28156000 27929000 9749200 9049300 12642000 1383 122 1343 27194;27195;27196;27197;27198;27199;27200;27201;27202;27203;27204;27205;27206;27207;27208;27209;27210;27211;27212;27213;27214;27215 16848;16849;16850;16851;16852;16853 16850 6 ALLAAFDFPFR Unmodified 1266.6761 0.67609367 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.782 53.542 2 5.4475E-08 26201 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 167.33 154.7 3371800000 473960000 495900000 0 16144000 16344000 17792000 217560000 182860000 195280000 45647000 48628000 54416000 225100000 213650000 231500000 50824000 43833000 46026000 386160000 0 304630000 35562000 36841000 33090000 1384 1644 1344 27216;27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232;27233;27234;27235;27236;27237;27238 16854;16855;16856;16857;16858;16859;16860;16861;16862;16863;16864;16865;16866;16867;16868;16869;16870 16864 17 ALLAAFDFPFRK Unmodified 1394.7711 0.77105669 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 3 3 3 1 1 1 2 2 2 47.494 46.335 2;3 2.377E-06 18615 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 178.94 175.83 1817900000 23547000 22944000 21369000 79202000 80383000 74430000 5474200 7598400 9653400 198460000 182440000 178630000 7892400 7205200 7193900 160820000 153610000 174010000 18282000 15236000 15630000 113350000 137340000 123180000 1385 1644 1345 27239;27240;27241;27242;27243;27244;27245;27246;27247;27248;27249;27250;27251;27252;27253;27254;27255;27256;27257;27258;27259;27260;27261;27262;27263;27264;27265;27266;27267;27268;27269;27270;27271;27272;27273;27274;27275;27276;27277 16871;16872;16873;16874;16875;16876;16877;16878;16879;16880;16881;16882;16883;16884;16885;16886;16887;16888;16889;16890;16891;16892;16893;16894;16895;16896;16897;16898;16899;16900;16901;16902;16903;16904;16905;16906 16882 36 ALLAGQSGISLIDHFDTSAYATK Unmodified 2378.2118 0.21179027 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 4 4 1 1 4 4 2 4 4 3 48.553 47.136 2;3 1.5347E-75 22976 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 304.9 296.92 3832000000 205900000 207120000 182010000 0 0 0 363710000 368090000 365610000 0 3238100 3667500 377700000 383400000 331160000 0 0 0 353830000 356030000 330480000 0 0 0 1386 596 1346 27278;27279;27280;27281;27282;27283;27284;27285;27286;27287;27288;27289;27290;27291;27292;27293;27294;27295;27296;27297;27298;27299;27300;27301;27302;27303;27304;27305;27306;27307;27308;27309;27310;27311;27312;27313;27314;27315;27316;27317 16907;16908;16909;16910;16911;16912;16913;16914;16915;16916;16917;16918;16919;16920;16921;16922;16923;16924;16925;16926;16927;16928;16929;16930;16931;16932;16933;16934;16935;16936;16937;16938;16939;16940;16941;16942;16943;16944;16945 16916 38 ALLDFFLSR Unmodified 1080.5968 0.59678072 306 P0A734 minE Cell division topological specificity factor yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.028 53.574 2 1.4502E-05 21804 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 178.83 141.67 2719200000 214050000 225980000 218290000 9259800 9685100 9511600 192330000 165180000 178780000 13162000 17252000 15220000 235920000 169430000 227330000 0 0 0 266740000 265250000 263410000 8204600 5764400 8410400 1387 306 1347 27318;27319;27320;27321;27322;27323;27324;27325;27326;27327;27328;27329;27330;27331;27332;27333;27334;27335;27336;27337;27338 16946;16947;16948;16949;16950;16951;16952;16953;16954;16955;16956;16957 16946 12 ALLDILADEK Unmodified 1099.6125 0.61249036 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.106 44.803 2 4.0348E-05 16346 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 140.35 135.05 232030000 2908800 2957300 2775600 0 0 0 14916000 15690000 15115000 1424800 1424000 0 12182000 10709000 10084000 26960000 50906000 47532000 5230400 5363200 5851600 0 0 0 1388 1089 1348 27339;27340;27341;27342;27343;27344;27345;27346;27347;27348;27349;27350;27351;27352;27353;27354;27355 16958;16959;16960;16961;16962;16963 16959 6 ALLDILADEKENGPEDTTQDDDMK Unmodified 2675.212 0.21198579 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 3 3 3 1 1 1 1 42.712 41.61 2;3;4 5.5624E-51 15009 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 305.89 301.57 3158600000 15932000 10960000 11991000 0 0 0 68911000 58458000 52958000 16209000 19090000 13296000 55706000 52155000 49987000 932500000 864450000 854790000 23448000 25404000 30032000 0 0 2321300 1389 1089 1349 27356;27357;27358;27359;27360;27361;27362;27363;27364;27365;27366;27367;27368;27369;27370;27371;27372;27373;27374;27375;27376;27377;27378;27379;27380 16964;16965;16966;16967;16968;16969;16970;16971;16972;16973;16974;16975;16976;16977;16978;16979;16980;16981;16982;16983 16972 19 ALLDILADEKENGPEDTTQDDDMKQSIVK Oxidation (M) 3246.5449 0.54494725 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 1 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 3 3 1 38.472 37.738 4 8.6688E-23 12684 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 161.51 160.51 378570000 0 0 0 0 0 0 0 0 0 4103400 2730700 3977300 0 0 0 122770000 92708000 151460000 0 0 0 823460 0 0 1390 1089 1350 27381;27382;27383;27384;27385;27386;27387;27388;27389;27390;27391;27392 16984;16985;16986;16987;16988;16989;16990;16991 16986 490 8 ALLDILADEKENGPEDTTQDDDMKQSIVK Unmodified 3230.55 0.55003262 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 3 3 2 1 40.912 39.778 3;4;5 2.495E-41 13932 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 212.21 210.09 11004000000 0 0 0 0 0 0 0 0 0 103620000 90270000 88734000 3551300 0 0 2998000000 3646400000 4064900000 0 0 0 0 8173800 0 1391 1089 1350 27393;27394;27395;27396;27397;27398;27399;27400;27401;27402;27403;27404;27405;27406;27407;27408 16992;16993;16994;16995;16996;16997;16998;16999;17000;17001;17002;17003;17004;17005;17006;17007 16998 16 ALLDNNIVPVINENDAVATAEIK Unmodified 2435.2908 0.29076888 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 2 2 2 1 1 1 1 1 1 51.626 50.338 2;3 7.8719E-05 24816 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.29 103.49 209240000 21177000 15207000 14860000 0 0 0 27621000 32294000 34111000 0 0 0 10272000 9106200 7160500 0 0 0 13725000 9687100 14016000 0 0 0 1392 328 1351 27409;27410;27411;27412;27413;27414;27415;27416;27417;27418;27419;27420;27421;27422;27423 17008;17009;17010 17008 2 ALLDTLLR Unmodified 913.55967 0.55966693 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.422 44.002 2 9.3068E-05 17318 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 162.51 87.797 3310800000 88034000 88686000 74344000 17625000 14632000 11886000 290250000 263590000 256390000 70799000 64907000 77068000 262750000 229500000 212990000 35038000 22293000 46819000 330260000 322170000 342480000 67037000 62923000 58282000 1393 644 1352 27424;27425;27426;27427;27428;27429;27430;27431;27432;27433;27434;27435;27436;27437;27438;27439;27440;27441;27442;27443;27444;27445;27446;27447 17011;17012;17013;17014;17015;17016;17017;17018;17019;17020;17021;17022;17023;17024;17025;17026;17027;17028;17029;17030;17031;17032;17033;17034 17020 24 ALLDTLLRR Unmodified 1069.6608 0.66077796 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 38.224 36.513 2;3 0.00030894 14191 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 97.798 78.012 133450000 0 0 0 8460000 7556400 8301500 0 0 0 13604000 13963000 14698000 0 0 0 7794600 5980900 5138900 0 0 0 16015000 15717000 16216000 1394 644 1353 27448;27449;27450;27451;27452;27453;27454;27455;27456;27457;27458;27459;27460;27461;27462;27463;27464;27465;27466;27467;27468;27469 17035;17036;17037;17038;17039;17040;17041;17042;17043;17044;17045;17046;17047;17048;17049 17046 15 ALLEFDDQEPQLQNEIR Unmodified 2057.0065 0.006548526 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 45.623 44.056 2;3 8.9068E-50 21588 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 333.58 318.19 1800100000 139220000 144560000 126960000 17687000 13386000 18191000 133300000 116660000 111070000 29131000 35309000 25580000 116660000 128510000 118150000 0 3430900 4626600 157240000 163060000 147690000 16969000 17131000 15557000 1395 1210 1354 27470;27471;27472;27473;27474;27475;27476;27477;27478;27479;27480;27481;27482;27483;27484;27485;27486;27487;27488;27489;27490;27491;27492;27493;27494;27495;27496;27497;27498;27499;27500;27501;27502;27503;27504;27505;27506;27507;27508;27509;27510;27511 17050;17051;17052;17053;17054;17055;17056;17057;17058;17059;17060;17061;17062;17063;17064;17065;17066;17067;17068;17069;17070;17071;17072;17073;17074;17075;17076;17077;17078;17079;17080;17081;17082;17083;17084;17085 17077 36 ALLEHLIDELEK Unmodified 1421.7766 0.77659558 487 P0A944 rimI Ribosomal-protein-alanine acetyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 50.542 49.143 2;3 0.0022555 23944 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 64.827 62.177 131730000 19524000 15398000 15292000 0 0 0 5264200 4060600 5292600 0 0 0 9903700 8567900 6845300 0 0 0 14062000 12361000 15162000 0 0 0 1396 487 1355 27512;27513;27514;27515;27516;27517;27518;27519;27520;27521;27522;27523;27524;27525;27526;27527;27528;27529;27530;27531;27532 17086;17087;17088;17089;17090;17091;17092;17093 17089 5 ALLEHLIDELEKR Unmodified 1577.8777 0.8777066 487 P0A944 rimI Ribosomal-protein-alanine acetyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.404 46.014 4 1.9382E-05 22380 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 97.953 93.404 47191000 6257000 4610700 5743600 0 0 0 3691400 3585400 1375400 0 0 0 3444300 2943100 2318500 0 0 0 3798100 4345800 5077600 0 0 0 1397 487 1356 27533;27534;27535;27536;27537;27538;27539;27540;27541;27542;27543;27544 17094;17095;17096 17094 3 ALLENTELSAR Unmodified 1215.6459 0.64591575 329 P0A7B8 hslV ATP-dependent protease subunit HslV yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.828 25.681 2 4.2896E-14 11819 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 204.7 190.03 2725800000 231280000 194610000 158040000 0 0 0 264400000 248230000 237500000 0 0 0 193950000 197510000 215940000 0 0 0 273610000 260910000 249850000 0 0 0 1398 329 1357 27545;27546;27547;27548;27549;27550;27551;27552;27553;27554;27555;27556;27557 17097;17098;17099;17100;17101;17102;17103;17104;17105;17106;17107;17108 17099 12 ALLEQLGLGK Unmodified 1040.623 0.62299547 557 P0A9T8 ybbA Uncharacterized ABC transporter ATP-binding protein YbbA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.194 38.518 2 0.00041239 19196 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 104.75 74.671 84731000 4613600 5420900 3784700 436650 801840 627280 12029000 10073000 11894000 0 0 0 4819300 5122100 4744500 0 0 0 6739500 7037800 6587000 0 0 0 1399 557 1358 27558;27559;27560;27561;27562;27563;27564;27565;27566;27567;27568;27569;27570;27571;27572 17109;17110;17111;17112;17113;17114;17115;17116;17117 17109 9 ALLEVANR Unmodified 884.50797 0.50796571 1190 P21893 recJ Single-stranded-DNA-specific exonuclease RecJ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 2 1 2 2 1 22.057 21.963 2 0.0096578 8801 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.369 46.895 392990000 104000000 33513000 30105000 0 0 0 18138000 6010900 17545000 0 0 0 45571000 38018000 2519500 0 0 0 45530000 42189000 9847000 0 0 0 1400 1190 1359 27573;27574;27575;27576;27577;27578;27579;27580;27581;27582;27583;27584;27585;27586;27587;27588;27589;27590;27591;27592;27593 17118;17119;17120 17120 0 ALLEVSGNVTDK Unmodified 1244.6612 0.66123147 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 27.3 26.085 2 0.10676 12181 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 41.08 13.95 48026000 0 6811900 0 0 0 0 8309300 8595900 0 0 0 598390 2436600 2825800 4158700 0 0 0 3549300 5203700 5536800 0 0 0 1401 1334 1360 27594;27595;27596;27597;27598;27599;27600;27601;27602;27603 17121 17121 0 ALLFVENR Unmodified 960.53927 0.53926584 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.974 31.429 2 0.0031836 12225 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 94.262 81.273 189410000 24226000 21870000 19042000 1722900 1422600 1355900 15426000 13631000 11631000 4230700 3771300 3102100 0 13233000 0 0 1239700 1359800 20388000 1553100 20003000 3203100 3497800 3497300 1402 544 1361 27604;27605;27606;27607;27608;27609;27610;27611;27612;27613;27614;27615;27616;27617;27618;27619;27620;27621;27622;27623;27624 17122;17123;17124;17125;17126;17127;17128;17129;17130;17131 17123 9 ALLHVAK Unmodified 750.47521 0.47520902 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 12.491 13.17 2 0.0019599 2729 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 120.76 120.76 15040000000 677840000 582210000 633670000 1633800000 1311700000 1387500000 714050000 677380000 650250000 107100000 91863000 124350000 460660000 481240000 402880000 32701000 13939000 14118000 853870000 909800000 724490000 952410000 804680000 797810000 1403 542 1362 27625;27626;27627;27628;27629;27630;27631;27632;27633;27634;27635;27636;27637;27638;27639;27640;27641;27642;27643;27644;27645;27646;27647;27648;27649;27650;27651;27652;27653;27654;27655;27656;27657;27658;27659 17132;17133;17134;17135;17136;17137;17138;17139;17140;17141;17142;17143;17144;17145;17146;17147;17148;17149;17150;17151;17152;17153;17154;17155;17156;17157;17158 17153 27 ALLLAALAHGK Unmodified 1076.6706 0.67061436 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 31.797 30.449 2;3 0.0015493 14430 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.548 80.053 701460000 78859000 76307000 79860000 0 662950 0 45483000 44961000 37533000 0 0 0 50094000 41344000 41247000 0 0 0 62164000 68020000 74929000 0 0 0 1404 232 1363 27660;27661;27662;27663;27664;27665;27666;27667;27668;27669;27670;27671;27672;27673;27674;27675;27676;27677;27678;27679;27680;27681;27682;27683;27684 17159;17160;17161;17162;17163;17164;17165;17166;17167;17168;17169 17161 11 ALLLKEDEIVIDR Unmodified 1525.8716 0.87155859 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 35.722 34.169 2;3 1.0005E-08 16838 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 203.03 198.33 3460200000 195210000 167780000 160220000 12711000 12444000 13247000 345280000 284470000 296030000 23497000 19256000 19765000 298980000 308760000 306350000 12956000 10194000 9325200 283060000 336720000 308660000 12291000 11766000 11234000 1405 192 1364 27685;27686;27687;27688;27689;27690;27691;27692;27693;27694;27695;27696;27697;27698;27699;27700;27701;27702;27703;27704;27705;27706;27707;27708;27709;27710;27711;27712;27713;27714;27715;27716;27717;27718;27719;27720;27721;27722;27723;27724;27725;27726;27727;27728;27729;27730;27731;27732 17170;17171;17172;17173;17174;17175;17176;17177;17178;17179;17180;17181;17182;17183;17184;17185;17186;17187;17188;17189;17190;17191;17192;17193;17194;17195;17196;17197;17198;17199;17200;17201;17202;17203;17204;17205;17206;17207;17208;17209;17210;17211;17212;17213 17181 39 ALLLKEDEIVIDRK Unmodified 1653.9665 0.96652161 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 1 2 2 28.747 27.454 3;4 0.000248 12022 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 76.156 75.011 422700000 26157000 20130000 20898000 2851600 5617300 4947000 40026000 43753000 36030000 9939800 4834900 6532100 20795000 22296000 20304000 2869400 3489700 4087900 44043000 36325000 35055000 3508000 4156400 4059600 1406 192 1365 27733;27734;27735;27736;27737;27738;27739;27740;27741;27742;27743;27744;27745;27746;27747;27748;27749;27750;27751;27752;27753;27754;27755;27756;27757;27758;27759;27760;27761;27762;27763;27764;27765;27766;27767;27768;27769;27770;27771;27772;27773;27774;27775;27776 17214;17215;17216;17217;17218;17219;17220;17221;17222 17222 5 ALLLLQK Unmodified 797.53747 0.53747492 95 P04846 nlpA Lipoprotein 28 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.944 30.361 2 0.0015509 14790 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128 96.233 220940000 19237000 16999000 12769000 5302200 4807700 4442600 16225000 16428000 16715000 5523900 8793800 7882500 7091500 7720500 6658400 0 0 0 19136000 18710000 17983000 3402500 2742600 2364700 1407 95 1366 27777;27778;27779;27780;27781;27782;27783;27784;27785;27786;27787;27788;27789;27790;27791;27792;27793;27794;27795;27796;27797 17223;17224;17225;17226;17227;17228;17229;17230;17231;17232;17233;17234;17235 17224 13 ALLMHGTEGEVYANPQR Unmodified 1884.9152 0.9152311 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 23.676 22.918 2;3 4.051E-50 9741 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 286.73 285.62 1192600000 173040000 171780000 121120000 1335800 1109100 986400 93921000 105230000 115140000 0 0 0 72676000 84309000 61324000 0 0 0 60838000 65080000 64695000 0 0 0 1408 1341 1367 27798;27799;27800;27801;27802;27803;27804;27805;27806;27807;27808;27809;27810;27811;27812;27813;27814;27815;27816;27817;27818;27819;27820;27821;27822;27823;27824 17236;17237;17238;17239;17240;17241;17242;17243;17244;17245;17246;17247;17248;17249;17250;17251;17252;17253;17254 17248 19 ALLNDMWGPGLTR Unmodified 1442.734 0.73401926 789 P0ADI4 entB Enterobactin synthase component B;Isochorismatase;Aryl carrier protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.57 46.18 2 3.4113E-07 22320 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 172.92 168.91 458680000 21282000 18637000 19536000 0 0 0 25617000 24616000 22183000 0 0 0 42703000 36757000 36809000 0 0 0 66926000 65427000 78185000 0 0 0 1409 789 1368 27825;27826;27827;27828;27829;27830;27831;27832;27833;27834;27835;27836 17255;17256;17257;17258;17259;17260;17261;17262;17263;17264;17265;17266 17260 12 ALLNLLAK Unmodified 854.55894 0.55893865 153 P07023 tyrA T-protein;Chorismate mutase;Prephenate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.252 37.489 2 0.00010981 18237 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.19 104.43 239840000 19136000 11875000 16073000 0 0 212550 27161000 22012000 23629000 800860 0 0 17938000 16764000 11529000 0 0 0 23547000 26351000 22810000 0 0 0 1410 153 1369 27837;27838;27839;27840;27841;27842;27843;27844;27845;27846;27847;27848;27849;27850 17267;17268;17269;17270;17271;17272;17273;17274;17275;17276;17277;17278 17270 12 ALLNSMVIGVTEGFTK Unmodified 1678.8964 0.89639314 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 52.885 51.652 2;3 1.0462E-23 20603 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 253.79 227.85 6937600000 860550000 240330000 828670000 43144000 32282000 41423000 265180000 283640000 275990000 64740000 50592000 57656000 557740000 516520000 468320000 60002000 51575000 59200000 673030000 645470000 696290000 51634000 58964000 54659000 1411 987 1370 27851;27852;27853;27854;27855;27856;27857;27858;27859;27860;27861;27862;27863;27864;27865;27866;27867;27868;27869;27870;27871;27872;27873;27874;27875;27876;27877;27878;27879;27880;27881;27882;27883;27884;27885;27886;27887;27888;27889;27890;27891;27892;27893;27894;27895;27896;27897;27898 17279;17280;17281;17282;17283;17284;17285;17286;17287;17288;17289;17290;17291;17292;17293;17294;17295;17296;17297;17298;17299;17300;17301;17302;17303;17304;17305;17306;17307;17308;17309;17310;17311;17312;17313;17314;17315;17316;17317;17318;17319;17320;17321;17322;17323;17324 17300 46 ALLNSMVIGVTEGFTKK Unmodified 1806.9914 0.99135615 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.876 45.427 3 1.6615E-06 16146 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 91.457 90.229 124310000 0 0 0 13179000 10180000 12752000 0 0 0 16491000 0 0 0 0 0 0 0 20887000 0 0 0 18193000 17472000 15158000 1412 987 1371 27899;27900;27901;27902;27903;27904;27905;27906 17325;17326;17327;17328;17329;17330;17331;17332 17332 8 ALLNVDK Unmodified 771.44905 0.44905385 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 18.795 19.292 2 0.012974 5441 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 84.244 30.689 83789000 18404000 22320000 18312000 5486800 5339000 4610000 2072100 2253700 0 0 0 0 0 0 0 0 0 0 0 2077200 2612400 0 0 301220 1413 592 1372 27907;27908;27909;27910;27911;27912;27913;27914;27915;27916;27917 17333;17334;17335 17333 3 ALLPDATDVWVIEPK Unmodified 1665.8978 0.89777335 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.233 51.789 2 3.0625E-06 25631 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 108.37 103.09 128650000 8696800 9391600 8645600 359240 0 0 19879000 20973000 19035000 0 0 0 11183000 9729100 9671700 0 0 0 5728100 5358400 0 0 0 0 1414 169 1373 27918;27919;27920;27921;27922;27923;27924;27925;27926;27927;27928;27929 17336 17336 1 ALLPLLWEMFPNHPNLLPAYFAEDDHPQMEK Unmodified 3675.7894 0.78943223 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.14 53.665 4 0.067794 26413 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 33.607 33.204 438170000 51458000 45247000 49026000 0 0 0 17523000 18537000 26498000 0 0 11086000 24193000 34170000 26620000 0 0 0 49404000 43574000 40834000 0 0 0 1415 806 1374 27930;27931;27932;27933;27934;27935;27936;27937;27938;27939;27940;27941;27942 17337;17338 17338 2 ALLPLVEEK Unmodified 1010.6012 0.60119739 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 36.777 35.095 1;2 0.0010569 17248 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.302 91.878 1651800000 245160000 218190000 175180000 21584000 25665000 20663000 225770000 215130000 215710000 13377000 14972000 11953000 34045000 34946000 33374000 1546600 1341200 0 50652000 46000000 43563000 1404000 0 1561900 1416 147 1375 27943;27944;27945;27946;27947;27948;27949;27950;27951;27952;27953;27954;27955;27956;27957;27958;27959;27960;27961;27962;27963;27964;27965;27966;27967;27968;27969;27970;27971;27972;27973 17339;17340;17341;17342;17343;17344;17345;17346;17347;17348;17349;17350;17351;17352;17353;17354 17342 15 ALLQALASQGK Unmodified 1098.6397 0.63970816 237 P0A6E9 bioD2 ATP-dependent dethiobiotin synthetase BioD 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.48 28.918 2 0.00011993 12897 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 116.05 71.656 735840000 18520000 17279000 15666000 0 0 0 116740000 109070000 112510000 4763500 5052900 3602100 64436000 66888000 58609000 0 0 0 50570000 46033000 46091000 0 0 0 1417 237 1376 27974;27975;27976;27977;27978;27979;27980;27981;27982;27983;27984;27985;27986;27987;27988 17355;17356;17357;17358;17359;17360;17361;17362;17363 17362 8 ALLQELCFGVLR Unmodified 1417.7752 0.77515579 1449 P36929 rsmB Ribosomal RNA small subunit methyltransferase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.654 51.357 2 1.6761E-08 24904 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 171.56 163.92 136470000 18911000 16996000 18020000 575640 0 0 9225700 7827900 8082200 2487100 2227500 0 3810300 4894100 4593800 0 0 0 13744000 12559000 12516000 0 0 0 1418 1449 1377 27989;27990;27991;27992;27993;27994;27995;27996;27997;27998;27999;28000;28001;28002;28003 17364;17365;17366 17366 3 ALLQISEPGLSAAPHQR Unmodified 1786.969 0.96898123 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 31.577 30.208 2;3 8.2192E-40 14284 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 262.56 262.56 1790900000 116560000 110810000 11435000 1133000 0 1215300 155260000 134740000 143450000 12925000 0 0 159400000 143530000 147370000 6421500 6549400 6825500 220810000 197310000 201040000 3638600 2115400 8412300 1419 294 1378 28004;28005;28006;28007;28008;28009;28010;28011;28012;28013;28014;28015;28016;28017;28018;28019;28020;28021;28022;28023;28024;28025;28026;28027;28028;28029;28030;28031;28032;28033;28034;28035;28036 17367;17368;17369;17370;17371;17372;17373;17374;17375;17376;17377;17378;17379;17380;17381;17382;17383;17384;17385;17386;17387;17388;17389 17377 23 ALLSMAIR Unmodified 873.51061 0.51060825 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.794 32.333 2 3.4132E-05 12654 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 174.21 139.01 1123100000 111110000 106120000 79563000 12162000 11564000 12596000 74231000 75084000 69452000 23623000 17478000 22796000 71564000 67611000 52384000 14906000 12199000 15027000 89480000 76971000 68119000 12688000 14157000 12169000 1420 1210 1379 28037;28038;28039;28040;28041;28042;28043;28044;28045;28046;28047;28048;28049;28050;28051;28052;28053;28054;28055;28056;28057;28058;28059;28060 17390;17391;17392;17393;17394;17395;17396;17397;17398;17399;17400;17401;17402;17403;17404;17405;17406;17407;17408;17409;17410;17411;17412 17394 22 ALLSQFPTAPNYPQADGSVK Unmodified 2103.0637 0.063669474 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 41.436 39.781 2;3 8.324E-30 19312 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 210.38 207.34 287450000 29221000 25310000 27628000 0 0 0 25158000 22620000 10760000 0 0 0 19524000 20774000 18764000 0 0 0 27853000 29280000 30553000 0 0 0 1421 186 1380 28061;28062;28063;28064;28065;28066;28067;28068;28069;28070;28071;28072;28073;28074;28075;28076;28077;28078;28079;28080;28081;28082;28083 17413;17414;17415;17416;17417;17418;17419;17420;17421;17422;17423 17416 11 ALLSVSDK Unmodified 831.47018 0.47018322 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 19.68 20.289 2 0.0027606 7788 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.798 69.544 704790000 223600000 219790000 197180000 0 1152000 1105000 0 0 0 0 0 0 25112000 19926000 16928000 0 0 0 0 0 0 0 0 0 1422 1111 1381 28084;28085;28086;28087;28088;28089;28090;28091 17424;17425;17426 17426 3 ALLTNVHGLNLENWQEELAQAK Unmodified 2490.2867 0.28668655 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 2 2 2 2 1 2 49.533 48.177 2;3 1.1756E-43 23537 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 298.93 294.76 1722400000 315950000 283160000 295280000 4510100 0 0 42235000 40768000 48463000 0 0 0 89300000 84030000 76000000 0 0 0 144750000 140250000 157680000 0 0 0 1423 34 1382 28092;28093;28094;28095;28096;28097;28098;28099;28100;28101;28102;28103;28104;28105;28106;28107;28108;28109;28110;28111;28112 17427;17428;17429;17430;17431;17432;17433;17434 17432 8 ALLTPGK Unmodified 698.43268 0.4326755 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.73 16.508 2 0.0053719 5650 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 99.919 43.409 1548000000 178060000 180020000 178430000 2576600 2977900 2520900 124890000 128010000 111140000 3993900 0 0 95281000 84228000 97612000 0 0 0 125630000 120080000 112570000 0 0 0 1424 696;1097 1383 28113;28114;28115;28116;28117;28118;28119;28120;28121;28122;28123;28124;28125;28126;28127;28128 17435;17436;17437;17438;17439;17440;17441;17442;17443;17444;17445;17446;17447;17448;17449 17446 15 ALMAEGDK Unmodified 833.3953 0.39530372 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS 1 1 12.548 13.247 2 0.0015297 3816 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 108.09 94.312 997340000 485630000 0 511710000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1425 1305 1384 28129;28130 17450;17451 17451 2 ALMAGNEQVGFDLVK Unmodified 1590.8076 0.80757813 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 42.54 40.819 2;3 1.19E-11 20219 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 202.65 196.93 2483100000 80323000 64321000 73985000 0 0 0 385450000 372170000 337360000 0 0 0 216810000 199320000 195620000 0 0 0 200730000 178100000 178940000 0 0 0 1426 257 1385 28131;28132;28133;28134;28135;28136;28137;28138;28139;28140;28141;28142;28143;28144;28145;28146;28147;28148;28149;28150;28151 17452;17453;17454;17455;17456;17457;17458;17459;17460;17461;17462;17463;17464;17465;17466;17467;17468;17469 17454 18 ALMATEGVNIEFTDSGIK Unmodified 1894.9346 0.93462914 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 1 1 2 45.831 44.416 2 2.8818E-06 22023 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.03 122.08 112230000 18468000 7607400 5078400 0 0 0 8349700 0 9345700 0 0 0 8355200 16176000 0 0 0 0 7151800 13064000 18634000 0 0 0 1427 245 1386 28152;28153;28154;28155;28156;28157;28158;28159;28160;28161;28162;28163;28164 17470;17471;17472;17473;17474;17475;17476;17477 17470 7 ALMATEGVNIEFTDSGIKR Unmodified 2051.0357 0.035740164 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.135 36.23 3 5.8847E-15 14637 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 149.57 144.24 180050000 4114900 0 7995500 8179100 8189100 8746800 5099800 6271900 7788100 22706000 22495000 17091000 3319700 0 4650100 0 0 0 5400600 6954700 5250400 12732000 11147000 11918000 1428 245 1387 28165;28166;28167;28168;28169;28170;28171;28172;28173;28174;28175;28176;28177;28178;28179;28180;28181;28182;28183 17478;17479;17480;17481 17478 4 ALMEYDESLR Unmodified 1225.5649 0.56488824 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.752 28.42 2 4.2675E-09 12613 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 194.44 191.44 4733400000 723670000 676250000 547270000 15474000 15039000 12298000 223230000 219450000 205480000 41921000 39206000 43133000 303740000 306300000 296430000 28870000 19512000 23253000 0 477370000 437860000 25533000 25379000 26695000 1429 378 1388 28184;28185;28186;28187;28188;28189;28190;28191;28192;28193;28194;28195;28196;28197;28198;28199;28200;28201;28202;28203;28204;28205;28206;28207 17482;17483;17484;17485;17486;17487;17488;17489;17490;17491;17492;17493;17494;17495;17496;17497;17498;17499;17500;17501;17502;17503;17504;17505 17504 24 ALMEYDESLR Oxidation (M) 1241.5598 0.55980286 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 1 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 23.62 22.688 2 0.020473 10011 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.433 54.321 37406000 0 9812300 0 0 0 0 3244700 0 0 1982700 0 696780 0 3810000 0 0 0 0 5944000 5842900 6072100 0 0 0 1430 378 1388 28208;28209;28210;28211;28212;28213;28214;28215 17506;17507;17508;17509 17507 163 0 ALMEYDESLRSELR Unmodified 1710.8247 0.82468476 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.465 31.007 3 6.2937E-06 11981 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 104.24 84.12 44369000 0 0 0 2660500 3748000 2496300 0 0 0 4851200 4704200 6515300 0 0 0 3762500 3413800 2924500 0 0 0 2032000 4170400 3090700 1431 378 1389 28216;28217;28218;28219;28220;28221;28222;28223;28224;28225;28226;28227 17510;17511;17512;17513 17510 4 ALMGANMQR 2 Oxidation (M) 1022.4637 0.46373441 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 2 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 10.812 10.888 2 0.0012189 2127 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 105.2 101.18 108930000 0 0 0 0 0 0 0 0 0 10995000 8352900 3616800 0 0 0 29134000 21981000 33534000 0 0 0 0 0 1319200 1432 463 1390 28228;28229;28230;28231;28232;28233;28234 17514;17515;17516 17515 252;253 3 ALMGANMQR Oxidation (M) 1006.4688 0.46881979 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 5 4 6 6 6 5 6 6 14.821 14.96 2 3.3167E-05 2966 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 155.19 144.88 2323300000 0 0 0 0 3119000 0 1914200 0 0 192110000 142220000 193620000 0 0 0 283250000 359210000 556840000 0 0 0 222070000 192780000 176150000 1433 463 1390 28235;28236;28237;28238;28239;28240;28241;28242;28243;28244;28245;28246;28247;28248;28249;28250;28251;28252;28253;28254;28255;28256;28257;28258;28259;28260;28261;28262;28263;28264;28265;28266;28267;28268;28269;28270;28271;28272;28273;28274;28275;28276;28277;28278;28279;28280;28281;28282;28283;28284;28285 17517;17518;17519;17520;17521;17522;17523;17524;17525;17526;17527;17528;17529;17530;17531;17532;17533;17534;17535;17536;17537;17538;17539;17540;17541;17542;17543;17544 17523 252;253 26 ALMGANMQR Unmodified 990.47391 0.47390517 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 2 1 1 1 1 2 2 2 17.47 17.826 2 1.0315E-05 4740 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 166.34 150.18 24539000000 155530000 151020000 128600000 15624000 8964200 7911300 136430000 134130000 136760000 1680300000 1546400000 1543900000 143560000 134290000 120130000 4308300000 3553400000 3730100000 211420000 210740000 182350000 2205900000 2006300000 2087400000 1434 463 1390 28286;28287;28288;28289;28290;28291;28292;28293;28294;28295;28296;28297;28298;28299;28300;28301;28302;28303;28304;28305;28306;28307;28308;28309;28310;28311;28312;28313;28314;28315;28316 17545;17546;17547;17548;17549;17550;17551;17552;17553;17554;17555;17556;17557;17558;17559;17560;17561;17562;17563;17564;17565;17566;17567;17568;17569;17570;17571;17572;17573;17574;17575;17576;17577;17578;17579;17580;17581 17546 33 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR Oxidation (M) 3722.8722 0.87217558 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 2 2 2 1 2 1 1 55.598 54.669 3;4 6.9104E-11 20953 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 108.08 106.39 269260000 0 0 0 0 0 0 0 0 0 11799000 8513100 16443000 0 0 0 74628000 67679000 46989000 0 0 0 22946000 14594000 5673600 1435 458 1391 28317;28318;28319;28320;28321;28322;28323;28324;28325;28326;28327;28328;28329;28330 17582;17583;17584;17585;17586 17583 222;223 4 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR Unmodified 3706.8773 0.87726096 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 3 3 3 1 1 1 1 55.93 55.34 3;4;5 3.7008E-14 21897 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 129.59 125.78 6054500000 0 0 0 0 0 0 0 0 0 71484000 29015000 53661000 0 0 0 1481400000 1869100000 1905700000 0 0 79296 131450000 281000000 231620000 1436 458 1391 28331;28332;28333;28334;28335;28336;28337;28338;28339;28340;28341;28342;28343;28344;28345;28346 17587;17588;17589;17590;17591;17592;17593;17594;17595;17596;17597;17598;17599 17597 13 ALMQEALLAVVR Unmodified 1312.7537 0.75369207 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 50.748 49.422 2;3 9.0162E-07 23933 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 179.8 179.8 3494400000 335760000 303930000 272960000 3063600 2438700 2219600 214330000 217520000 224680000 0 0 0 298060000 250670000 282420000 0 0 0 387600000 377260000 320560000 0 920220 0 1437 170 1392 28347;28348;28349;28350;28351;28352;28353;28354;28355;28356;28357;28358;28359;28360;28361;28362;28363;28364;28365;28366;28367;28368;28369;28370;28371;28372;28373;28374 17600;17601;17602;17603;17604;17605;17606;17607;17608;17609;17610;17611;17612;17613;17614;17615;17616;17617;17618;17619;17620;17621;17622;17623 17616 19 ALMSAVPIPDPDLEK Unmodified 1594.8276 0.82764487 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.042 44.647 2 1.0858E-06 21713 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 117.79 109.7 622530000 127870000 120780000 117160000 27817000 30324000 23583000 0 0 0 21416000 20861000 20882000 0 0 0 4514700 3285000 2909800 33482000 0 38533000 11513000 9665100 7932000 1438 1935 1393 28375;28376;28377;28378;28379;28380;28381;28382;28383;28384;28385;28386;28387;28388;28389;28390;28391 17624;17625;17626;17627;17628;17629;17630;17631 17630 8 ALMSAVPIPDPDLEKNK Unmodified 1836.9655 0.96553533 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.227 36.67 3 0.0055628 12752 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 50.079 49.358 53865000 0 0 0 9351600 9406800 9126400 0 0 0 5188200 4380400 4035800 0 0 0 1960500 786810 1020900 0 0 0 2815600 2877400 2914900 1439 1935 1394 28392;28393;28394;28395;28396;28397;28398;28399;28400;28401;28402;28403 17632;17633;17634;17635;17636;17637 17637 6 ALMVHVGGDNMSDQPK Unmodified 1697.7865 0.78652511 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 21.863 21.925 2;3 4.1151E-11 8896 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.36 154.73 218190000 58909000 63290000 53892000 0 0 0 15553000 0 12507000 0 0 0 0 0 0 0 0 0 3688200 6212000 4141500 0 0 0 1440 1007 1395 28404;28405;28406;28407;28408;28409;28410;28411;28412;28413;28414 17638;17639;17640;17641;17642 17641 4 ALMVHVGGDNMSDQPKPLGGGGER Unmodified 2421.1529 0.15291196 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 2 1 1 1 1 1 1 24.733 23.741 3;4 4.0483E-22 10749 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 169.56 167.76 2302600000 608680000 600150000 563100000 478840 994210 1074100 121040000 116040000 131710000 0 0 0 23649000 20661000 23252000 0 0 0 33918000 28553000 29250000 0 0 0 1441 1007 1396 28415;28416;28417;28418;28419;28420;28421;28422;28423;28424;28425;28426;28427;28428;28429;28430;28431;28432;28433 17643;17644;17645;17646;17647;17648;17649;17650;17651;17652;17653;17654;17655;17656;17657;17658;17659 17646 17 ALNAAGFR Unmodified 818.43989 0.43988615 366 P0A7R9 rpsK 30S ribosomal protein S11 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 18.525 18.903 2 2.0316E-06 6792 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 188.61 163.61 4982000000 507100000 487110000 447360000 25065000 31649000 26240000 290890000 300240000 296270000 33529000 58722000 61595000 308640000 296670000 270590000 18241000 26395000 31215000 496860000 458740000 392830000 42800000 37164000 36062000 1442 366 1397 28434;28435;28436;28437;28438;28439;28440;28441;28442;28443;28444;28445;28446;28447;28448;28449;28450;28451;28452;28453;28454;28455;28456;28457;28458;28459;28460;28461;28462 17660;17661;17662;17663;17664;17665;17666;17667;17668;17669;17670;17671;17672;17673;17674;17675;17676;17677;17678;17679;17680;17681;17682;17683;17684 17678 21 ALNADDGKEIWSVSLAEK Unmodified 1944.9793 0.97927114 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.453 35.878 3 7.4451E-05 13035 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 74.732 69.73 72214000 0 0 0 1731900 1607300 1569600 0 0 0 9628800 6788800 6492600 0 0 0 4657500 3030000 4659100 8185000 11238000 0 4557900 3440300 4627000 1443 1940 1398 28463;28464;28465;28466;28467;28468;28469;28470;28471;28472;28473;28474;28475;28476 17685;17686;17687;17688;17689;17690;17691;17692 17685 6 ALNAYLQR Unmodified 947.51886 0.51886475 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.279 22.064 2 5.0586E-05 8702 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 170.94 108.22 2311800000 198250000 181890000 161850000 2706100 3229900 2795900 0 256830000 247680000 4887800 3635600 3926300 188750000 162740000 184630000 0 0 0 231410000 232690000 238740000 1936800 0 3238800 1444 445 1399 28477;28478;28479;28480;28481;28482;28483;28484;28485;28486;28487;28488;28489;28490;28491;28492;28493;28494;28495 17693;17694;17695;17696;17697;17698;17699;17700;17701;17702 17701 4 ALNEGATITDEASALEYCGFHPQLVEGR Unmodified 3047.4295 0.42946398 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.925 46.549 3 4.344E-11 22678 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 123.21 121.9 141230000 9393900 9559500 10741000 0 0 0 0 0 10134000 0 0 0 12303000 11130000 11275000 0 0 0 14398000 19883000 17870000 0 5694600 8845100 1445 1964 1400 28496;28497;28498;28499;28500;28501;28502;28503;28504;28505;28506;28507 17703;17704 17703 2 ALNFGIISTESQQNLKPQWTPFLQDMEK Unmodified 3262.6332 0.63324916 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 53.644 52.193 3;4 2.8386E-31 25522 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 193.19 192.34 924380000 0 0 0 0 0 0 63560000 65081000 60312000 0 0 0 87267000 72089000 70203000 0 0 0 173930000 165920000 166010000 0 0 0 1446 1124 1401 28508;28509;28510;28511;28512;28513;28514;28515;28516;28517;28518;28519;28520;28521;28522;28523;28524;28525 17705;17706;17707;17708;17709;17710;17711;17712;17713;17714;17715;17716;17717;17718 17709 14 ALNFLTPHQK Unmodified 1167.64 0.64004252 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 1 2 2 2 1 1 1 1 1 2 2 2 2 22.463 22.071 2;3 0.00012402 7255 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 150.4 148 679550000 13597000 16060000 16834000 8775700 0 2310300 44094000 47854000 44206000 27275000 23940000 5565700 27011000 24919000 25881000 3985200 4810400 4761700 31570000 43170000 51152000 61489000 61446000 88840000 1447 205;1157 1402 28526;28527;28528;28529;28530;28531;28532;28533;28534;28535;28536;28537;28538;28539;28540;28541;28542;28543;28544;28545;28546;28547;28548;28549;28550;28551;28552;28553;28554;28555;28556;28557;28558;28559;28560;28561;28562;28563 17719;17720;17721;17722;17723;17724;17725;17726;17727;17728;17729;17730 17724 7 ALNFLVR Unmodified 831.49667 0.49667274 659 P0ABI4 corA Magnesium transport protein CorA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.14 32.77 2 0.00065418 16013 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 148.4 124.21 284730000 6917000 7399700 3859400 1395900 1450400 0 19820000 18979000 20873000 0 8218300 0 25120000 28611000 32443000 5243800 3384700 3946300 27710000 23273000 28879000 5674100 6034700 5498900 1448 659 1403 28564;28565;28566;28567;28568;28569;28570;28571;28572;28573;28574;28575;28576;28577;28578;28579;28580;28581;28582;28583;28584 17731;17732;17733;17734;17735;17736;17737;17738;17739;17740;17741;17742;17743;17744;17745;17746;17747 17736 17 ALNHAVSLGMAK Unmodified 1210.6492 0.64922699 1939 P77756 queC 7-cyano-7-deazaguanine synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 17.418 18.098 2 0.0074989 6757 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 73.841 59.704 252370000 17834000 0 18793000 0 0 0 25751000 29570000 22574000 0 0 0 21115000 21658000 20552000 0 0 0 24535000 25929000 24063000 0 0 0 1449 1939 1404 28585;28586;28587;28588;28589;28590;28591;28592;28593;28594;28595 17748;17749;17750;17751 17749 0 ALNIAFDNR Unmodified 1032.5352 0.53524309 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 0 By MS/MS 1 29.302 28.312 2 0.00099453 12444 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 95.909 16.435 21125000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21125000 0 0 0 0 0 0 0 0 0 1450 1260 1405 28596 17752 17752 1 ALNLLHSAGVK Unmodified 1121.6557 0.65569258 685 P0ABV6 tolR Protein TolR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 1 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 22.277 22.061 2;3 0.0027592 7323 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 73.985 62.03 131910000 0 0 1556800 2151300 3442300 2537400 5020600 9860500 3478400 0 0 8107100 11316000 10366000 6636900 828950 1088700 976320 12964000 17686000 17364000 6008000 4415000 6107000 1451 685 1406 28597;28598;28599;28600;28601;28602;28603;28604;28605;28606;28607;28608;28609;28610;28611;28612;28613;28614;28615;28616;28617;28618;28619;28620;28621;28622;28623;28624;28625;28626;28627;28628;28629 17753;17754;17755;17756 17753 4 ALNLQDK Unmodified 800.43922 0.43921744 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 1 3 3 2 2 2 3 2 2 2 3 2 2 2 2 2 14.272 14.817 1;2 0.0035704 3952 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 107.43 59.256 3608800000 644150000 661360000 561470000 51897000 44248000 46437000 205580000 3294500 4536200 91397000 85398000 76048000 22643000 21084000 250890000 75491000 58162000 65806000 459180000 34550000 6718400 48935000 46233000 43246000 1452 349 1407 28630;28631;28632;28633;28634;28635;28636;28637;28638;28639;28640;28641;28642;28643;28644;28645;28646;28647;28648;28649;28650;28651;28652;28653;28654;28655;28656;28657;28658;28659;28660;28661;28662;28663;28664;28665;28666;28667;28668;28669;28670;28671;28672;28673;28674;28675;28676 17757;17758;17759;17760;17761;17762;17763;17764;17765;17766;17767;17768;17769;17770;17771;17772;17773 17760 14 ALNNATFSK Unmodified 964.49779 0.49779495 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.787 15.329 2 0.15615 4113 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 37.549 29.209 58093000 0 0 0 937490 0 938920 8207800 5881200 7052500 6077400 4257800 4395300 1822800 2017400 2069500 2359300 1252400 0 4334800 4320800 0 0 0 2167500 1453 1877 1408 28677;28678;28679;28680;28681;28682;28683;28684;28685;28686;28687;28688;28689;28690;28691;28692 17774 17774 1 ALNNELQQEVHQR Unmodified 1577.791 0.79101686 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 17.353 18.117 3 1.3227E-05 6561 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.87 99.493 83855000 0 16113000 11265000 1219700 0 0 0 0 0 0 0 0 7182400 8194100 8199300 0 0 0 9286500 12475000 9919400 0 0 0 1454 1295 1409 28693;28694;28695;28696;28697;28698;28699;28700;28701 17775;17776 17776 2 ALNPEHPVIR Unmodified 1144.6353 0.63529149 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 1 15.432 16.12 2;3 0.0010085 5396 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 105.14 98.24 644520000 64299000 70239000 70675000 0 0 0 47005000 47768000 43660000 1020100 0 1441900 43459000 41058000 50500000 0 0 0 56503000 51102000 52654000 1609200 606520 925340 1455 1609 1410 28702;28703;28704;28705;28706;28707;28708;28709;28710;28711;28712;28713;28714;28715;28716;28717;28718;28719;28720;28721;28722;28723;28724;28725;28726;28727;28728;28729;28730 17777;17778;17779;17780;17781;17782;17783;17784;17785;17786;17787;17788;17789 17782 9 ALNSVEASQPHQDQMEK Unmodified 1910.8792 0.87923952 523 P0A9H9 cheZ Protein phosphatase CheZ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 13.789 14.548 2;3 5.6922E-07 4538 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.08 137.41 255790000 81271000 66899000 63479000 12389000 11811000 14988000 0 0 0 1868000 1921300 1164700 0 0 0 0 0 0 0 0 0 0 0 0 1456 523 1411 28731;28732;28733;28734;28735;28736;28737;28738;28739;28740;28741;28742;28743;28744;28745 17790;17791;17792;17793;17794 17794 5 ALNTLDYTVGTLGNHEFNYGLDYLK Unmodified 2830.3814 0.3813748 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.533 50.286 3 2.0156E-31 24540 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 200.9 194.4 633630000 76042000 79900000 81806000 0 0 0 50778000 49615000 50683000 0 0 0 52131000 40258000 38045000 0 0 0 33002000 39325000 42042000 0 0 0 1457 184 1412 28746;28747;28748;28749;28750;28751;28752;28753;28754;28755;28756;28757 17795;17796;17797;17798;17799;17800;17801;17802;17803;17804;17805;17806 17802 12 ALNVEEQSVQETEQEER Unmodified 2016.9236 0.92360676 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.895 22.953 2 3.2028E-89 10267 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 348.72 332.97 169330000 18119000 21019000 16650000 1750800 1848300 2114400 7973200 9928900 9257300 1479000 0 0 10742000 9627300 8125800 0 0 0 16695000 18151000 15846000 0 0 0 1458 1183 1413 28758;28759;28760;28761;28762;28763;28764;28765;28766;28767;28768;28769;28770;28771;28772;28773 17807;17808;17809;17810;17811;17812;17813;17814;17815 17808 9 ALNVMLK Unmodified 787.4626 0.46259542 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 25.154 24.131 2 0.0068895 7634 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 93.593 79.607 30938000000 934230000 775380000 684060000 3319900000 3028100000 3101100000 934210000 974540000 770250000 358060000 345040000 324080000 634460000 577690000 624590000 131020000 115350000 108090000 725520000 919770000 1010900000 3308200000 3613800000 3619800000 1459 939 1414 28774;28775;28776;28777;28778;28779;28780;28781;28782;28783;28784;28785;28786;28787;28788;28789;28790;28791;28792;28793;28794;28795;28796;28797;28798;28799;28800;28801 17816;17817;17818;17819;17820;17821;17822;17823;17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835;17836;17837;17838;17839 17831 22 ALNVMLK Oxidation (M) 803.45751 0.45751004 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 6 8 8 2 3 3 3 3 3 2 3 1 3 3 3 2 2 1 7 6 6 22.304 21.916 2 0.0085481 7227 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 85.306 58.169 2048200000 3244500 0 2918000 306220000 295290000 244000000 91796000 87041000 91997000 32507000 22573000 15424000 17660000 63589000 3752600 6163400 6179100 5922300 21676000 26632000 186920000 185860000 160700000 170120000 1460 939 1414 28802;28803;28804;28805;28806;28807;28808;28809;28810;28811;28812;28813;28814;28815;28816;28817;28818;28819;28820;28821;28822;28823;28824;28825;28826;28827;28828;28829;28830;28831;28832;28833;28834;28835;28836;28837;28838;28839;28840;28841;28842;28843;28844;28845;28846;28847;28848;28849;28850;28851;28852;28853;28854;28855;28856;28857;28858;28859;28860;28861;28862;28863;28864;28865;28866;28867;28868;28869;28870;28871;28872;28873;28874;28875;28876;28877;28878;28879;28880;28881 17840;17841;17842;17843;17844;17845;17846;17847;17848;17849;17850;17851;17852;17853;17854;17855;17856;17857;17858;17859;17860;17861;17862;17863;17864;17865;17866;17867;17868;17869;17870;17871;17872;17873;17874;17875;17876;17877;17878;17879;17880;17881;17882;17883;17884;17885;17886;17887;17888;17889;17890;17891;17892;17893;17894;17895;17896;17897;17898;17899;17900;17901;17902;17903;17904 17855 432 64 ALNYLIHQLESDIVTIDYR Unmodified 2275.1848 0.18484724 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.611 53.163 3 2.8104E-18 25967 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 176.42 170.97 1076500000 246720000 218870000 202390000 0 0 0 31531000 32306000 31346000 0 0 0 49709000 43444000 38682000 0 0 0 64305000 55151000 62024000 0 0 0 1461 340 1415 28882;28883;28884;28885;28886;28887;28888;28889;28890;28891;28892;28893 17905;17906;17907;17908;17909;17910;17911 17906 5 ALNYTTEQILDLFFEK Unmodified 1943.988 0.98804492 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 3 2 4 3 3 2 4 4 3 2 3 3 5 5 5 4 3 3 5 4 6 55.668 54.486 2;3 2.5431E-24 21914 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 215.48 200.45 62650000000 390440000 341700000 276080000 37562000 37728000 46393000 83238000 83678000 184200000 3953500000 3698800000 2333200000 266180000 257730000 263850000 10268000000 13730000000 13571000000 413010000 314870000 311780000 3203800000 4039700000 4543400000 1462 463 1416 28894;28895;28896;28897;28898;28899;28900;28901;28902;28903;28904;28905;28906;28907;28908;28909;28910;28911;28912;28913;28914;28915;28916;28917;28918;28919;28920;28921;28922;28923;28924;28925;28926;28927;28928;28929;28930;28931;28932;28933;28934;28935;28936;28937;28938;28939;28940;28941;28942;28943;28944;28945;28946;28947;28948;28949;28950;28951;28952;28953;28954;28955;28956;28957;28958;28959;28960;28961;28962;28963;28964;28965;28966;28967;28968;28969;28970;28971;28972;28973;28974;28975;28976;28977 17912;17913;17914;17915;17916;17917;17918;17919;17920;17921;17922;17923;17924;17925;17926;17927;17928;17929;17930;17931;17932;17933;17934;17935;17936;17937;17938;17939;17940;17941;17942;17943;17944;17945;17946;17947;17948;17949;17950;17951;17952;17953;17954;17955 17928 44 ALPAIADAVK Unmodified 967.57023 0.57023162 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.372 28.851 2 0.0026379 13518 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.732 57.173 230040000 12189000 13427000 11600000 1877000 1640100 2130000 16121000 17494000 18012000 6195100 5263100 4917300 8532000 10239000 9517600 0 617640 0 26925000 24900000 25161000 4258300 4422000 4595300 1463 1417 1417 28978;28979;28980;28981;28982;28983;28984;28985;28986;28987;28988;28989;28990;28991;28992;28993;28994;28995;28996;28997;28998;28999 17956;17957;17958;17959;17960;17961;17962 17958 7 ALPDAQFEVVHSLAK Unmodified 1623.8621 0.86205654 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 35.371 33.729 2;3 4.693E-15 16059 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 190.36 186.82 3913400000 408680000 374800000 336580000 9896000 10340000 11663000 734910000 683010000 679240000 14247000 17313000 17195000 96208000 103070000 91757000 0 0 1824200 104990000 110950000 102040000 0 2442900 2251800 1464 64 1418 29000;29001;29002;29003;29004;29005;29006;29007;29008;29009;29010;29011;29012;29013;29014;29015;29016;29017;29018;29019;29020;29021;29022;29023;29024;29025;29026;29027;29028;29029;29030;29031;29032;29033;29034;29035;29036;29037;29038 17963;17964;17965;17966;17967;17968;17969;17970;17971;17972;17973;17974;17975;17976;17977;17978;17979;17980;17981;17982;17983;17984;17985;17986;17987 17982 22 ALPDDLLQR Unmodified 1039.5662 0.56620887 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.35 32.902 2 0.00015189 15596 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.77 117.73 507880000 58322000 58334000 45499000 0 0 0 43183000 44047000 36888000 0 0 0 33715000 31744000 28591000 0 0 0 42232000 42824000 42505000 0 0 0 1465 1485 1419 29039;29040;29041;29042;29043;29044;29045;29046;29047;29048;29049;29050 17988;17989;17990;17991;17992;17993;17994;17995;17996 17990 9 ALPEFAQDKER Unmodified 1302.6568 0.65681479 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 2 2 1 1 17.866 18.548 2;3 6.9873E-05 5059 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 103.08 97.768 68777000 9936300 12898000 9886800 11307000 11892000 9061200 0 0 0 0 0 0 0 0 0 0 0 0 1930300 0 1865200 0 0 0 1466 592 1420 29051;29052;29053;29054;29055;29056;29057;29058;29059;29060;29061;29062;29063 17997;17998;17999;18000;18001 17999 5 ALPEWHRPEELLEMLGSEPQK Unmodified 2488.242 0.24204455 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 48.099 46.648 4 0.001524 22750 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.602 59.364 66232000 0 0 0 0 0 0 7806600 7005200 7715200 0 0 0 7546400 0 8189700 0 0 0 9168200 10187000 8613900 0 0 0 1467 193 1421 29064;29065;29066;29067;29068;29069;29070;29071 18002;18003;18004;18005 18003 4 ALPFDLR Unmodified 830.46504 0.46503826 1974 Q47150 dinJ Antitoxin DinJ yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.19 36.353 2 0.0046378 17969 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 102.98 70.009 65717000 5440200 3326800 3918900 2731100 2539200 2847200 4594000 4154200 5023400 1009300 1310900 966850 4204500 3508500 4007600 0 0 0 5400900 5166700 4688000 0 0 878280 1468 1974 1422 29072;29073;29074;29075;29076;29077;29078;29079;29080;29081;29082;29083;29084;29085;29086;29087;29088;29089;29090 18006;18007;18008;18009;18010;18011;18012;18013 18007 8 ALPFDLREPNQLTIQSIK Unmodified 2082.1473 0.14733952 1974 Q47150 dinJ Antitoxin DinJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 45.78 44.116 3 0.0030217 15672 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 56.121 48.297 21604000 0 0 0 6812400 5584900 7953500 0 0 0 0 0 1253300 0 0 0 0 0 0 0 0 0 0 0 0 1469 1974 1423 29091;29092;29093;29094 18014;18015;18016 18014 3 ALPGYGDGEIQATISGLALPGETVADQHK Unmodified 2907.4614 0.46141603 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 50.571 49.165 3 0.0018906 19725 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 47.73 45.448 80548000 0 0 0 0 0 0 0 0 0 9951400 9771500 8855800 9335000 5895700 6322700 0 0 0 8618400 10291000 9717100 0 0 1789400 1470 1877 1424 29095;29096;29097;29098;29099;29100;29101;29102;29103;29104 18017;18018;18019 18018 3 ALPIYGK Unmodified 760.44833 0.44832557 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.065 21.403 1 0.0079603 8790 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 105.42 56.107 179350000 7837500 7664300 7505900 0 0 0 16503000 16575000 17077000 0 0 0 11533000 12509000 15158000 0 0 0 24936000 20247000 21808000 0 0 0 1471 1496 1425 29105;29106;29107;29108;29109;29110;29111;29112;29113;29114;29115;29116 18020;18021;18022 18021 1 ALPLLVFVPSK Unmodified 1182.7376 0.7376313 131 P06846 ebgR HTH-type transcriptional regulator EbgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.383 51.943 2 0.0010446 25662 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.02 100.02 122240000 12697000 10238000 9027900 0 0 0 9894000 9392300 9068000 0 0 0 10470000 9287600 9372900 0 0 0 8619200 11591000 12584000 0 0 0 1472 131 1426 29117;29118;29119;29120;29121;29122;29123;29124;29125;29126;29127;29128 18023;18024;18025;18026;18027;18028;18029;18030;18031;18032 18027 10 ALPLPELK Unmodified 879.54295 0.54295423 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 35.368 33.832 2 0.0034654 16106 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 91.906 59.436 113310000 0 3835400 4253500 0 0 0 5309800 6463100 5179500 0 0 0 13388000 10535000 10696000 0 0 0 17551000 19085000 17012000 0 0 0 1473 1070 1427 29129;29130;29131;29132;29133;29134;29135;29136;29137;29138;29139 18033;18034;18035;18036;18037;18038 18035 6 ALPLPVSVPSHCALMK Unmodified 1718.9212 0.9211681 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 37.494 35.82 2;3 3.0669E-08 16690 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 119.74 116.79 1662500000 123030000 128800000 126000000 0 0 0 137240000 151130000 122340000 0 0 0 155460000 132970000 146720000 0 0 0 150580000 164070000 124140000 0 0 0 1474 597 1428 29140;29141;29142;29143;29144;29145;29146;29147;29148;29149;29150;29151;29152;29153;29154;29155;29156;29157;29158;29159;29160;29161;29162;29163 18039;18040;18041;18042;18043;18044;18045;18046;18047;18048;18049;18050;18051;18052;18053;18054;18055;18056;18057;18058;18059;18060;18061 18057 23 ALPLPVSVPSHCALMKPAADK Unmodified 2201.1701 0.17006558 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 33.36 31.914 3;4 7.5516E-07 14403 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.488 97.428 2545100000 195630000 203080000 181580000 701660 0 0 151880000 173020000 149620000 0 0 0 236270000 235450000 218210000 0 0 0 254400000 258950000 286320000 0 0 0 1475 597 1429 29164;29165;29166;29167;29168;29169;29170;29171;29172;29173;29174;29175;29176;29177;29178;29179;29180;29181;29182;29183;29184;29185;29186;29187;29188 18062;18063;18064;18065;18066;18067;18068;18069;18070;18071;18072;18073;18074;18075;18076;18077;18078;18079;18080;18081;18082;18083;18084 18084 23 ALPNQPIKLDVIKPDGQVLR Unmodified 2213.2896 0.28958709 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 2 2 2 1 1 36.711 34.553 3;4 0.0049402 13630 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 50.938 49.577 48145000 0 0 0 1341600 2047300 2260800 0 0 0 11712000 10163000 10286000 0 0 0 0 0 0 0 0 0 4532500 1305000 4496300 1476 1877 1430 29189;29190;29191;29192;29193;29194;29195;29196;29197;29198;29199;29200;29201;29202 18085;18086;18087 18086 3 ALPNVPWVDHTR Unmodified 1403.731 0.73098279 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.422 31.083 3 2.3736E-05 14719 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 92.925 89.604 298140000 38779000 39232000 32216000 0 0 0 26503000 26783000 21324000 0 0 0 18119000 16693000 22641000 0 0 0 17208000 18335000 20306000 0 0 0 1477 88 1431 29203;29204;29205;29206;29207;29208;29209;29210;29211;29212;29213;29214 18088;18089;18090;18091;18092;18093;18094;18095;18096;18097;18098 18091 11 ALPPGEHGFHIHAK Unmodified 1509.7841 0.78408099 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 4 4 4 1 3 2 3 2 1 1 2 14.09 14.804 2;3;4 4.5016E-05 4159 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 66.989 52.358 595870000 161540000 154000000 144690000 0 0 0 28067000 28266000 25293000 0 0 0 17960000 9802300 0 0 0 0 7623800 6990200 11630000 0 0 0 1478 1007 1432 29215;29216;29217;29218;29219;29220;29221;29222;29223;29224;29225;29226;29227;29228;29229;29230;29231;29232;29233;29234;29235;29236;29237;29238;29239;29240;29241 18099;18100;18101;18102;18103;18104;18105;18106;18107;18108;18109;18110;18111 18106 13 ALPSAVSER Unmodified 928.49779 0.49779495 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.725 16.251 2 0.00011938 4500 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 133.6 94.382 1063600000 42537000 43816000 39246000 587180 0 395240 2115300 52021000 48080000 21746000 21729000 22309000 44889000 1399900 1663600 19805000 16537000 16188000 140290000 131080000 140160000 92521000 84246000 80236000 1479 215 1433 29242;29243;29244;29245;29246;29247;29248;29249;29250;29251;29252;29253;29254;29255;29256;29257;29258;29259;29260;29261;29262;29263;29264 18112;18113;18114;18115;18116;18117;18118;18119;18120;18121;18122;18123;18124 18116 13 ALPVGTLLVELIYVVEAQAPK Unmodified 2222.2926 0.29260678 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 55.876 54.705 2;3 2.4543E-35 21130 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 224.16 219.17 4090900000 2469500 2306500 0 0 0 0 4116100 2562300 2763300 453110000 529580000 429350000 0 0 0 605490000 692590000 347200000 7567500 5233800 0 396880000 310440000 299260000 1480 1616 1434 29265;29266;29267;29268;29269;29270;29271;29272;29273;29274;29275;29276;29277;29278;29279;29280;29281;29282;29283;29284;29285;29286;29287;29288;29289;29290 18125;18126;18127;18128;18129;18130;18131;18132;18133;18134;18135;18136;18137;18138;18139;18140;18141;18142 18127 18 ALPVLDK Unmodified 754.45889 0.45889025 1202 P22939 ispA Farnesyl diphosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 23.62 22.503 2 0.042666 10022 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 63.287 43.405 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1481 1202 1435 29291;29292;29293 18143;18144;18145 18143 3 ALPVLEK Unmodified 768.47454 0.47454032 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.793 22.252 2 0.078591 9017 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 57.811 39.127 2782800000 272890000 284760000 233690000 0 1465800 0 352260000 333020000 390060000 0 0 0 159880000 145570000 114280000 0 0 0 165850000 161580000 167480000 0 0 0 1482 1086 1436 29294;29295;29296;29297;29298;29299;29300;29301;29302;29303;29304;29305;29306 18146;18147;18148;18149;18150;18151;18152;18153;18154;18155;18156;18157;18158 18157 13 ALQAEAAVEAVAQAMR Unmodified 1627.8352 0.83518986 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 2 2 2 2 2 2 2 2 2 2 50.498 49.096 2;3 1.9967E-06 22924 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 136.27 122.47 155080000 6093800 5791700 9782900 0 0 0 15646000 19111000 15099000 0 0 0 16739000 13217000 14582000 0 0 0 12727000 13351000 12940000 0 0 0 1483 389 1437 29307;29308;29309;29310;29311;29312;29313;29314;29315;29316;29317;29318;29319;29320;29321;29322;29323;29324;29325;29326;29327;29328 18159;18160;18161;18162 18162 4 ALQAIAGPFSQVR Unmodified 1356.7514 0.75138388 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 37.454 35.78 2;3 8.361E-13 17248 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 198.25 190.87 3092200000 231990000 221920000 229760000 0 0 1067700 322090000 325440000 313780000 0 0 0 260060000 220360000 212310000 0 0 0 256970000 261520000 234990000 0 0 0 1484 490 1438 29329;29330;29331;29332;29333;29334;29335;29336;29337;29338;29339;29340;29341;29342;29343;29344;29345;29346;29347;29348;29349;29350;29351;29352;29353 18163;18164;18165;18166;18167;18168;18169;18170;18171;18172;18173;18174;18175;18176;18177;18178;18179;18180 18169 17 ALQAMEANKYDEAR Unmodified 1608.7566 0.75660519 1708 P66948 bepA Beta-barrel assembly-enhancing protease yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.545 17.303 3 1.1832E-05 6096 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.592 96.353 87585000 9892500 10113000 9348300 0 0 0 5519200 7208500 7674400 0 0 0 3745900 4607400 5541100 0 0 0 7703900 8056600 8174300 0 0 0 1485 1708 1439 29354;29355;29356;29357;29358;29359;29360;29361;29362;29363;29364;29365 18181;18182;18183 18183 3 ALQANLFAVLR Unmodified 1214.7135 0.71354181 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.692 47.361 2 0.02539 22878 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 58.981 57.72 58016000 5694900 5434800 4635900 0 0 0 6971500 7243300 7127900 0 0 0 3685900 2736100 1923800 0 0 0 3414600 4529400 4618200 0 0 0 1486 801 1440 29366;29367;29368;29369;29370;29371;29372;29373;29374;29375;29376;29377 18184;18185;18186;18187 18185 0 ALQDFVIDK Unmodified 1047.5601 0.56006086 612 P0AAT6 rsfS Ribosomal silencing factor RsfS yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.153 32.705 2 0.060289 15676 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.066 32.291 285960000 52628000 53525000 45862000 0 0 0 12564000 10150000 10053000 0 0 0 14163000 14223000 16025000 0 0 0 20061000 17066000 19635000 0 0 0 1487 612 1441 29378;29379;29380;29381;29382;29383;29384;29385;29386;29387;29388;29389 18188 18188 1 ALQDFVIDKIDDLK Unmodified 1631.877 0.8770379 612 P0AAT6 rsfS Ribosomal silencing factor RsfS yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 48.091 46.712 3 5.5776E-05 22736 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.291 70.904 116620000 0 24526000 19733000 0 0 0 6000200 7331700 8889400 0 0 0 5688300 9055800 4713400 0 0 0 9477700 12689000 8514200 0 0 0 1488 612 1442 29390;29391;29392;29393;29394;29395;29396;29397;29398;29399;29400 18189;18190;18191;18192;18193;18194;18195 18191 7 ALQEASGFIR Unmodified 1090.5771 0.57710791 342 P0A7G2 rbfA Ribosome-binding factor A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.106 24.878 2 1.8359E-06 11010 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.63 121.84 654400000 86217000 82684000 69899000 3188100 2828300 3874300 54619000 48388000 51260000 19179000 15207000 15216000 24139000 21738000 22038000 0 0 0 45030000 45094000 40437000 0 0 3367300 1489 342 1443 29401;29402;29403;29404;29405;29406;29407;29408;29409;29410;29411;29412;29413;29414;29415;29416;29417;29418;29419 18196;18197;18198;18199;18200;18201;18202;18203;18204;18205;18206;18207 18203 12 ALQECMQHNFSVFR Unmodified 1765.8028 0.80284388 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 1 2 1 1 1 2 2 2 2 2 2 31.845 30.224 2;3 6.6475E-46 14157 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 292.35 290.03 1596300000 31080000 120130000 124080000 41419000 38084000 40120000 85100000 72265000 77487000 37625000 18737000 27037000 25315000 26014000 25523000 0 0 0 233620000 173400000 248830000 51061000 43998000 55398000 1490 698 1444 29420;29421;29422;29423;29424;29425;29426;29427;29428;29429;29430;29431;29432;29433;29434;29435;29436;29437;29438;29439;29440;29441;29442;29443;29444;29445;29446;29447;29448;29449;29450;29451;29452;29453;29454;29455;29456 18208;18209;18210;18211;18212;18213;18214;18215;18216;18217;18218;18219;18220;18221;18222;18223;18224;18225;18226;18227;18228;18229;18230;18231;18232;18233;18234 18226 27 ALQEYCAK Unmodified 981.45897 0.45896661 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.649 13.49 2 0.00096947 3956 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 115.46 106.64 536160000 20864000 21487000 21640000 0 0 0 46805000 56035000 47106000 0 0 0 50600000 36458000 44594000 0 0 0 70343000 62980000 57247000 0 0 0 1491 1497 1445 29457;29458;29459;29460;29461;29462;29463;29464;29465;29466;29467;29468 18235;18236;18237;18238;18239;18240;18241;18242;18243;18244;18245 18240 11 ALQGEQGVVECAYVEGDGQYAR Unmodified 2398.0859 0.085937834 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 2 2 2 3 3 3 34.619 33.15 2;3 4.7827E-89 15704 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 426 423.36 3130600000 484040000 445180000 371580000 0 0 0 219880000 228610000 206930000 0 0 0 145600000 130110000 109220000 0 0 0 262740000 291290000 235410000 0 0 0 1492 1642 1446 29469;29470;29471;29472;29473;29474;29475;29476;29477;29478;29479;29480;29481;29482;29483;29484;29485;29486;29487;29488;29489;29490;29491;29492;29493;29494;29495;29496;29497 18246;18247;18248;18249;18250;18251;18252;18253;18254;18255;18256;18257;18258;18259;18260;18261;18262;18263;18264;18265;18266;18267;18268;18269;18270;18271;18272;18273;18274;18275;18276;18277;18278;18279;18280;18281;18282;18283 18249 37 ALQLGIEASNINPK Unmodified 1466.8093 0.80929269 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 34.571 33.117 2;3 2.8627E-14 15666 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 215.89 215.63 1767100000 195520000 183170000 149860000 0 0 595780 172870000 170630000 188010000 0 0 0 98340000 86928000 84048000 0 0 0 156170000 147910000 132990000 0 0 0 1493 1170 1447 29498;29499;29500;29501;29502;29503;29504;29505;29506;29507;29508;29509;29510;29511;29512;29513;29514;29515;29516;29517;29518;29519;29520;29521;29522 18284;18285;18286;18287;18288;18289;18290;18291;18292;18293;18294;18295;18296;18297;18298;18299;18300;18301;18302 18290 19 ALQLLAR Unmodified 783.49667 0.49667274 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.297 25.018 2 0.00056307 11336 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.82 65.758 191740000 13506000 14623000 13563000 1276600 1109800 0 16766000 14719000 13489000 3456500 3518300 3207300 10977000 11313000 9994900 0 0 0 19138000 18747000 15656000 1997000 2010100 2670800 1494 127 1448 29523;29524;29525;29526;29527;29528;29529;29530;29531;29532;29533;29534;29535;29536;29537;29538;29539;29540;29541;29542 18303;18304;18305;18306;18307;18308;18309;18310;18311;18312;18313;18314;18315;18316 18308 14 ALQNNAIEEFKR Unmodified 1431.747 0.74702678 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 21.305 21.248 2;3 1.502E-06 7263 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 124.42 119.27 226830000 12449000 12570000 13108000 0 0 4527800 9366300 11648000 10418000 21666000 13094000 21170000 5018300 5683800 6473500 3538900 3735600 3559800 15242000 10686000 11589000 12252000 9376800 9653300 1495 78 1449 29543;29544;29545;29546;29547;29548;29549;29550;29551;29552;29553;29554;29555;29556;29557;29558;29559;29560;29561;29562;29563;29564;29565;29566;29567;29568;29569;29570 18317;18318;18319;18320;18321 18319 4 ALQNVDLIR Unmodified 1040.5978 0.59784335 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 3 3 2 1 1 2 31.376 30.101 2 0.00011938 12492 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.6 74.619 1842500000 166910000 155130000 133940000 1121000 0 834050 0 392940000 348380000 0 0 0 138440000 143410000 133030000 0 0 0 42337000 51046000 135010000 0 0 0 1496 1845 1450 29571;29572;29573;29574;29575;29576;29577;29578;29579;29580;29581;29582;29583;29584;29585;29586;29587;29588;29589;29590;29591;29592 18322;18323;18324;18325;18326;18327;18328 18324 7 ALQPIYDLLENCDVPISK Unmodified 2087.0609 0.060892282 1533 P39377 iadA Isoaspartyl dipeptidase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.629 52.189 2 2.7453E-09 25480 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.5 107.77 139840000 18522000 18840000 19044000 0 0 0 8874500 11335000 9370800 0 0 0 6495900 8367200 7648300 0 0 0 10623000 10505000 10215000 0 0 0 1497 1533 1451 29593;29594;29595;29596;29597;29598;29599;29600;29601;29602;29603;29604 18329;18330;18331 18331 3 ALQSMWETWQEMHEPGTR Unmodified 2215.9779 0.97790771 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.585 41.924 3 8.583E-18 19556 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 173.58 173.16 1193800000 107700000 104000000 83954000 0 0 0 64944000 83087000 76204000 0 2405100 0 112000000 127770000 116590000 0 0 0 115080000 98801000 95956000 2382000 1646200 1328400 1498 1172 1452 29605;29606;29607;29608;29609;29610;29611;29612;29613;29614;29615;29616;29617;29618;29619;29620 18332;18333;18334;18335;18336;18337;18338;18339;18340;18341;18342;18343 18342 12 ALQSSINEDK Unmodified 1103.5459 0.54586736 765 P0AD24 yejL UPF0352 protein YejL yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.61 13.443 2 2.6035E-05 3997 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 146.81 135.04 935830000 68825000 52576000 53909000 0 0 0 82805000 103530000 88008000 0 0 0 74435000 62984000 58619000 0 0 0 98893000 99369000 91880000 0 0 0 1499 765 1453 29621;29622;29623;29624;29625;29626;29627;29628;29629;29630;29631;29632 18344;18345 18344 2 ALQSSINEDKAH Unmodified 1311.6419 0.64189301 765 P0AD24 yejL UPF0352 protein YejL yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.837 12.484 2 1.0185E-09 3398 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 131.5 108.43 276640000 25760000 22433000 23223000 2095000 2447000 2432300 0 0 22298000 8180700 8065500 9916900 20231000 20089000 17191000 0 0 1847700 34806000 35482000 0 5696700 7360200 7087200 1500 765 1454 29633;29634;29635;29636;29637;29638;29639;29640;29641;29642;29643;29644;29645;29646;29647;29648;29649;29650;29651;29652 18346;18347;18348;18349;18350;18351;18352;18353;18354;18355;18356;18357;18358 18351 13 ALREELVTLTGGQK Unmodified 1513.8464 0.84640648 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 28.59 27.342 2;3 5.1387E-68 12447 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 327.75 275.17 1299700000 142450000 139970000 119640000 0 0 0 94657000 99394000 87392000 0 0 0 91492000 99731000 87302000 0 0 0 111440000 124710000 101490000 0 0 0 1501 1136 1455 29653;29654;29655;29656;29657;29658;29659;29660;29661;29662;29663;29664;29665;29666;29667;29668;29669;29670;29671;29672;29673;29674;29675;29676 18359;18360;18361;18362;18363;18364;18365;18366;18367;18368;18369;18370;18371;18372;18373;18374;18375;18376;18377;18378;18379;18380 18373 22 ALRGDVASR Unmodified 943.51993 0.51992738 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 11.161 11.294 2 6.9007E-08 2200 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 195.32 149.6 1800100000 0 0 0 0 0 0 7945300 0 0 12350000 9431100 13228000 0 0 0 927720000 435910000 393570000 0 0 0 0 0 0 1502 1089 1456 29677;29678;29679;29680;29681;29682;29683 18381;18382;18383;18384 18382 4 ALRPDEDR Unmodified 970.48321 0.48320752 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.577 11.408 2 0.0017543 2682 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.5 103.09 881970000 0 94212000 90013000 0 0 0 173160000 178130000 189850000 0 0 0 28148000 24844000 24270000 0 0 0 31298000 26581000 21468000 0 0 0 1503 64 1457 29684;29685;29686;29687;29688;29689;29690;29691;29692;29693;29694 18385;18386 18386 2 ALRPDEDRLSPLHSVYVDQWDWER Unmodified 2981.442 0.442018 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 41.548 39.36 4;5 0.00010029 16020 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 79.762 78.608 48133000 0 0 0 7941300 3945600 10371000 0 0 0 9417100 7371200 9087300 0 0 0 0 0 0 0 0 0 0 0 0 1504 64 1458 29695;29696;29697;29698;29699;29700;29701;29702;29703;29704;29705 18387;18388;18389;18390;18391;18392 18387 6 ALRPLPDK Unmodified 908.54435 0.54435122 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.381 13.245 2 4.2581E-05 3902 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.09 143.73 4063300000 309470000 236880000 246060000 52722000 0 54667000 477540000 438750000 504570000 0 0 0 313900000 287450000 266760000 0 0 0 288680000 294790000 291110000 0 0 0 1505 448;449 1459 29706;29707;29708;29709;29710;29711;29712;29713;29714;29715;29716;29717;29718;29719 18393;18394;18395;18396;18397;18398;18399;18400;18401;18402;18403;18404 18399 12 ALRPLPDKFHGLQDQEAR Unmodified 2090.1021 0.10212067 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 1 3 3 3 3 3 3 20.226 20.592 3;4;5 2.0839E-17 7994 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.08 163.28 1410500000 89915000 88217000 73056000 0 675490 0 141170000 137620000 136520000 3120300 0 0 127840000 89167000 85609000 0 0 0 148910000 131470000 157240000 0 0 0 1506 448 1460 29720;29721;29722;29723;29724;29725;29726;29727;29728;29729;29730;29731;29732;29733;29734;29735;29736;29737;29738;29739;29740;29741;29742;29743;29744;29745;29746;29747;29748;29749;29750;29751;29752;29753;29754;29755;29756;29757 18405;18406;18407;18408;18409;18410;18411;18412;18413;18414;18415;18416;18417;18418;18419;18420;18421;18422;18423;18424;18425;18426;18427;18428;18429;18430 18421 22 ALRPLPDKFHGLQDQEVR Unmodified 2118.1334 0.13342079 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 2 1 3 3 3 1 3 3 3 1 3 3 3 22.167 22.098 3;4;5 1.8553E-17 9441 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.43 156.95 1360800000 125180000 90971000 99481000 0 3514100 1615200 201160000 239250000 176390000 0 0 3430800 66533000 65499000 52849000 0 877510 0 76075000 79215000 78753000 0 0 0 1507 449 1461 29758;29759;29760;29761;29762;29763;29764;29765;29766;29767;29768;29769;29770;29771;29772;29773;29774;29775;29776;29777;29778;29779;29780;29781;29782;29783;29784;29785;29786;29787;29788;29789;29790;29791;29792;29793;29794;29795;29796;29797;29798 18431;18432;18433;18434;18435;18436;18437;18438;18439;18440;18441;18442;18443;18444;18445;18446;18447;18448;18449;18450;18451;18452;18453;18454;18455 18433 25 ALSDDQR Unmodified 803.37735 0.37734547 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1 1 1 2 2 2 2 9.5928 10.412 2 0.0021148 2143 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 118.01 96.308 2388700000 147840000 4451500 158840000 0 0 0 85016000 82824000 84636000 0 0 0 403420000 265880000 203310000 0 0 0 355260000 321150000 276070000 0 0 0 1508 868 1462 29799;29800;29801;29802;29803;29804;29805;29806;29807;29808;29809;29810;29811;29812;29813;29814;29815 18456;18457;18458;18459;18460;18461;18462;18463;18464;18465 18457 10 ALSEALEK Unmodified 859.4651 0.46509784 381 P0A7Y8 rnpA Ribonuclease P protein component yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 15.84 16.464 2 0.0026738 4464 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 98.523 60.965 62356000 0 0 3818200 0 0 0 0 6236500 0 0 0 0 0 2666100 3798500 0 0 0 0 0 4324000 12540000 13345000 15627000 1509 381 1463 29816;29817;29818;29819;29820;29821;29822;29823 18466;18467;18468 18468 3 ALSELEQIVTR Unmodified 1257.6929 0.69286595 429 P0A8G9 xseB Exodeoxyribonuclease 7 small subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.524 37.908 2 9.9585E-06 18337 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.2 114.31 411470000 51614000 49886000 43180000 2937400 2772400 2853300 25722000 20330000 22227000 5608300 6127500 4760500 18542000 21578000 21217000 2291600 1935500 2506700 32727000 29961000 32619000 3040000 3668900 3371700 1510 429 1464 29824;29825;29826;29827;29828;29829;29830;29831;29832;29833;29834;29835;29836;29837;29838;29839;29840;29841;29842;29843;29844;29845;29846;29847 18469;18470;18471;18472;18473;18474;18475;18476;18477;18478;18479;18480;18481;18482;18483;18484;18485;18486 18482 18 ALSGAALNVYPGR Unmodified 1287.6935 0.69353465 100 P04983 rbsA Ribose import ATP-binding protein RbsA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.405 29.048 2 0.060662 13093 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 43.77 37.167 73209000 3848700 3632800 3832600 0 0 0 6524800 6315600 6988300 0 0 0 6718400 5750500 7106900 0 0 0 5222300 9468800 7798800 0 0 0 1511 100 1465 29848;29849;29850;29851;29852;29853;29854;29855;29856;29857;29858;29859 18487 18487 0 ALSGGQR Unmodified 687.36639 0.36638685 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 5.0026 5.9139 1 0.020248 1218 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.935 42.514 77707000 0 0 0 0 0 0 0 14292000 13418000 0 0 0 8286000 8129500 9329900 0 0 0 8833200 7878500 7540600 0 0 0 1512 1718 1466 29860;29861;29862;29863;29864;29865;29866;29867 18488 18488 1 ALSGGVGAEELK Unmodified 1129.5979 0.59790293 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.236 20.625 2 8.0604E-05 8244 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 99.568 69.401 1781300000 105840000 107050000 89422000 0 0 0 212860000 212410000 217730000 0 0 0 158420000 130590000 118500000 0 0 0 147180000 127600000 153690000 0 0 0 1513 1868 1467 29868;29869;29870;29871;29872;29873;29874;29875;29876;29877;29878;29879 18489;18490;18491;18492;18493;18494;18495;18496;18497 18490 9 ALSGGVGAEELKDFPGYGK Unmodified 1893.9472 0.94724273 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 34.258 32.833 3 2.4972E-07 15646 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.57 102.36 197820000 16404000 14632000 15368000 0 0 0 26335000 23618000 0 0 0 0 14844000 15976000 15197000 0 0 0 17670000 17945000 19828000 0 0 0 1514 1868 1468 29880;29881;29882;29883;29884;29885;29886;29887;29888;29889;29890 18498;18499;18500;18501 18499 3 ALSHTLLMFDNFYDVEEK Unmodified 2171.0245 0.024506776 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 2 2 2 1 49.536 48.275 2;3 4.5028E-110 23496 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 367.23 365.22 7149600000 1075400000 934330000 984390000 8174300 11091000 10391000 370500000 343740000 309020000 0 0 0 493500000 375250000 409930000 4471500 2482100 3745800 582120000 603470000 619980000 7616000 0 0 1515 1444 1469 29891;29892;29893;29894;29895;29896;29897;29898;29899;29900;29901;29902;29903;29904;29905;29906;29907;29908;29909;29910;29911;29912;29913;29914;29915;29916;29917;29918;29919;29920;29921 18502;18503;18504;18505;18506;18507;18508;18509;18510;18511;18512;18513;18514;18515;18516;18517;18518;18519;18520;18521;18522;18523;18524;18525;18526;18527;18528;18529;18530 18514 29 ALSLFCVIMGR Unmodified 1265.6624 0.66243422 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.591 53.129 2 0.0020199 26368 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.7 96.541 240790000 0 0 0 0 0 0 35822000 32261000 33912000 0 0 0 21827000 25999000 21908000 0 0 0 26886000 23650000 18526000 0 0 0 1516 285 1470 29922;29923;29924;29925;29926;29927;29928;29929;29930 18531;18532;18533 18532 3 ALSMDAVQK Unmodified 961.49027 0.49026674 1299;1423 P27302;P33570 tktA;tktB Transketolase 1;Transketolase 2 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.181 18.813 2 0.002417 6597 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 85.212 74.338 8793100000 534940000 550550000 534490000 0 1450000 1639100 1011300000 974900000 965060000 0 0 0 749610000 775850000 779880000 0 0 0 647890000 681150000 584440000 0 0 0 1517 1299;1423 1471 29931;29932;29933;29934;29935;29936;29937;29938;29939;29940;29941;29942;29943;29944 18534;18535;18536;18537;18538;18539;18540;18541;18542;18543 18543 4 ALSMDAVQK Oxidation (M) 977.48518 0.48518136 1299;1423 P27302;P33570 tktA;tktB Transketolase 1;Transketolase 2 no no 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.951 12.734 2 0.0088203 3549 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 69.198 57.429 134970000 8580200 0 9130900 0 0 0 16918000 16449000 17958000 2217200 0 0 7830100 9403000 8318700 0 0 0 13605000 14371000 10192000 0 0 0 1518 1299;1423 1471 29945;29946;29947;29948;29949;29950;29951;29952;29953;29954;29955;29956 18544;18545;18546;18547;18548 18544 526 3 ALSMMAK Unmodified 750.37682 0.37681688 1463 P37313 dppF Dipeptide transport ATP-binding protein DppF yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 16.06 16.975 2 0.051776 4407 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 62.714 57.176 17797000 0 8655900 0 2864000 3073500 3204100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1519 1463 1472 29957;29958;29959;29960 18549 18549 1 ALSNHENDNQQQR Unmodified 1552.6978 0.69784476 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 4.9805 5.8916 2 5.6834E-13 1212 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 227.94 212.68 73949000 0 0 0 0 0 0 4432300 5865000 0 0 0 0 8741800 8815600 7098300 0 0 0 13792000 14192000 11012000 0 0 0 1520 1197 1473 29961;29962;29963;29964;29965;29966;29967;29968 18550;18551;18552 18551 3 ALSNNMTR Oxidation (M) 921.43381 0.43381449 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.224 11.079 2 0.10047 2483 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 53.679 42.987 76590000 0 0 0 0 0 0 12533000 11541000 10219000 0 0 0 6697300 6117400 4358600 0 0 0 14811000 10312000 0 0 0 0 1521 412 1474 29969;29970;29971;29972;29973;29974;29975;29976 18553;18554 18553 2 ALSNNMTR Unmodified 905.4389 0.43889987 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 11.703 12.469 2 0.00024649 3231 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 150.17 129.51 1851300000 0 0 0 0 0 0 268500000 304060000 226980000 2243500 0 0 271280000 211540000 0 0 0 0 270420000 296300000 0 0 0 0 1522 412 1474 29977;29978;29979;29980;29981;29982;29983;29984 18555;18556 18555 2 ALSNPDLYEGDGELR Unmodified 1647.774 0.77402939 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.61 30.056 2 5.0803E-20 14459 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.36 204.61 3304900000 318290000 297320000 267420000 5609700 4269500 3945900 270800000 263520000 289920000 3050500 4526800 5382900 229430000 222390000 223400000 0 0 0 316640000 286880000 292110000 0 0 0 1523 295 1475 29985;29986;29987;29988;29989;29990;29991;29992;29993;29994;29995;29996;29997;29998;29999;30000;30001;30002 18557;18558;18559;18560;18561;18562;18563;18564;18565;18566;18567;18568;18569;18570;18571;18572;18573;18574;18575;18576 18559 20 ALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPK Unmodified 4369.1001 0.10013792 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 2 1 1 2 2 2 51.551 50.292 4;5 1.2152E-23 24539 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.26 156.26 1551000000 70197000 92149000 93426000 0 1564600 0 175330000 205850000 193610000 0 0 0 126770000 113240000 82136000 0 0 0 115270000 129550000 151910000 0 0 0 1524 441 1476 30003;30004;30005;30006;30007;30008;30009;30010;30011;30012;30013;30014;30015;30016;30017;30018;30019;30020;30021;30022;30023;30024 18577;18578;18579;18580;18581;18582;18583;18584;18585;18586;18587;18588;18589;18590 18586 14 ALSSQQLAAR Unmodified 1043.5724 0.57235688 1975 Q47622 sapA Peptide transport periplasmic protein SapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.195 15.003 2 0.058933 4874 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 52.482 33.699 52284000 3059600 3109400 3008400 0 315950 302180 6020400 5073500 5322600 0 0 0 4099600 2856200 2599100 0 0 0 6116600 4780800 5620000 0 0 0 1525 1975 1477 30025;30026;30027;30028;30029;30030;30031;30032;30033;30034;30035;30036;30037;30038 18591;18592;18593;18594;18595 18593 0 ALSVGETLPAR Unmodified 1112.619 0.61897272 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 1 2 2 1 2 19.051 18.783 2;3 7.4209E-06 10809 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.94 115.93 1016200000 173480000 171830000 168340000 0 918250 0 66172000 62908000 77300000 0 0 0 69155000 6200300 55453000 0 0 0 74867000 7553900 81982000 0 0 0 1526 49 1478 30039;30040;30041;30042;30043;30044;30045;30046;30047;30048;30049;30050;30051;30052;30053;30054;30055;30056;30057;30058;30059;30060;30061 18596;18597;18598;18599 18596 4 ALSVPCSDSK Unmodified 1062.5016 0.5015597 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 1 1 2 1 1 1 16.567 17.071 2 0.00030386 5277 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 111.82 97.306 17633000000 1323200000 1258800000 1112400000 0 35041000 0 1858700000 1809700000 1676200000 32799000 27470000 31026000 1244800000 1032800000 1103100000 13650000 8439400 8783400 1663100000 1714300000 1613300000 24704000 17324000 23447000 1527 240 1479 30062;30063;30064;30065;30066;30067;30068;30069;30070;30071;30072;30073;30074;30075;30076;30077;30078;30079;30080;30081;30082;30083;30084;30085;30086;30087;30088;30089;30090 18600;18601;18602;18603;18604;18605;18606;18607;18608;18609;18610;18611;18612;18613 18609 7 ALSYNNIADTDAALECVK Unmodified 1966.9306 0.93060639 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 1 2 2 2 2 39.533 37.867 2;3 1.83E-36 18522 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 233.37 219.11 965400000 283020000 265950000 222740000 0 440470 0 13966000 9017100 10798000 0 0 0 23849000 6178900 23978000 0 0 0 37197000 33829000 34434000 0 0 0 1528 1111 1480 30091;30092;30093;30094;30095;30096;30097;30098;30099;30100;30101;30102;30103;30104;30105;30106;30107;30108;30109;30110;30111;30112;30113 18614;18615;18616;18617;18618;18619;18620;18621;18622;18623;18624;18625 18620 12 ALTDFMVEFER Unmodified 1356.6384 0.63838754 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.807 51.47 2 1.2184E-19 18707 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 231.23 222.37 2000500000 280160000 290790000 274520000 27874000 39297000 34280000 111530000 102760000 112850000 33438000 32050000 32738000 86458000 83069000 88533000 0 0 0 117560000 131940000 120670000 0 0 0 1529 1211 1481 30114;30115;30116;30117;30118;30119;30120;30121;30122;30123;30124;30125;30126;30127;30128;30129;30130;30131 18626;18627;18628;18629;18630;18631;18632;18633;18634;18635;18636;18637;18638;18639 18633 14 ALTDFMVEFERR Unmodified 1512.7395 0.73949856 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 46.973 45.139 3 9.444E-06 16116 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 106.01 98.283 18954000 0 0 0 5153700 3938700 4102500 0 0 0 1847600 2338600 1572800 0 0 0 0 0 0 0 0 0 0 0 0 1530 1211 1482 30132;30133;30134;30135;30136;30137 18640;18641 18641 2 ALTEANGDIELAIENMR Unmodified 1858.9095 0.90947702 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 4 3 3 2 3 2 1 1 4 2 3 1 2 3 2 1 1 48.465 47.116 2;3 1.1661E-49 22625 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 329.49 295.62 3118300000 222040000 198470000 187210000 0 0 0 252700000 286520000 232890000 0 2817900 3575100 295770000 178640000 236630000 2173900 0 0 376360000 386020000 252150000 2710500 1628300 0 1531 267 1483 30138;30139;30140;30141;30142;30143;30144;30145;30146;30147;30148;30149;30150;30151;30152;30153;30154;30155;30156;30157;30158;30159;30160;30161;30162;30163;30164;30165;30166;30167;30168;30169;30170;30171;30172;30173;30174;30175 18642;18643;18644;18645;18646;18647;18648;18649;18650;18651;18652;18653;18654;18655;18656;18657;18658;18659;18660;18661;18662;18663;18664;18665;18666;18667;18668;18669;18670;18671;18672;18673;18674;18675;18676;18677;18678;18679;18680 18660 37 ALTEETGTTIEIEDDGTVK Unmodified 2020.9688 0.96882562 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.152 32.704 2 7.4578E-37 15571 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 287.9 282.74 111490000 5364700 6458200 4107400 0 0 0 10520000 9590800 10202000 0 0 0 9917000 10731000 10000000 0 0 0 11010000 10864000 12722000 0 0 0 1532 107 1484 30176;30177;30178;30179;30180;30181;30182;30183;30184;30185;30186;30187 18681;18682;18683;18684;18685;18686;18687;18688;18689;18690;18691 18685 10 ALTFCEAEMDNLTR Unmodified 1669.744 0.74399159 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.838 39.095 2 6.6981E-35 19124 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 254.24 251.93 439870000 34932000 30892000 32828000 0 1330500 0 29875000 29271000 26931000 0 0 0 31315000 29959000 30334000 0 0 0 50631000 54224000 42210000 6034600 4890700 4212600 1533 1197 1485 30188;30189;30190;30191;30192;30193;30194;30195;30196;30197;30198;30199;30200;30201;30202;30203 18692;18693;18694;18695;18696;18697;18698;18699;18700 18696 8 ALTGLSPDEIVNQVK Unmodified 1582.8566 0.85663681 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.246 40.363 2 3.1714E-15 18891 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 194.49 167.37 757380000 41104000 39806000 35828000 9867200 11227000 10769000 43682000 45116000 46426000 13663000 14305000 14793000 46932000 52333000 43210000 0 0 0 79674000 87712000 87619000 11060000 10835000 11424000 1534 1383 1486 30204;30205;30206;30207;30208;30209;30210;30211;30212;30213;30214;30215;30216;30217;30218;30219;30220;30221;30222;30223;30224 18701;18702;18703;18704;18705;18706;18707;18708;18709;18710;18711;18712;18713;18714;18715;18716;18717;18718;18719;18720 18719 18 ALTICTVSDHIR Unmodified 1384.7133 0.71328381 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 26.063 24.904 2;3 4.1442E-23 11428 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 271.37 253.55 7884000000 247800000 176240000 181420000 1720000 1676600 2232800 1408500000 1473900000 1456800000 0 0 0 214180000 204610000 200250000 0 0 0 808010000 778950000 727730000 0 0 0 1535 669 1487 30225;30226;30227;30228;30229;30230;30231;30232;30233;30234;30235;30236;30237;30238;30239;30240;30241;30242;30243;30244;30245;30246;30247;30248;30249;30250;30251 18721;18722;18723;18724;18725;18726;18727;18728;18729;18730;18731;18732;18733;18734;18735;18736;18737;18738;18739;18740;18741;18742;18743 18726 23 ALTLQEK Unmodified 801.45962 0.45961853 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 2 1 1 2 2 1 2 1 1 1 1 1 1 2 1 1 1 14.866 15.388 1;2 0.022682 4170 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 74.439 33.753 108850000 5342400 5507900 4238000 2152000 2223000 1662400 11659000 13375000 0 8699600 1268700 586460 1634200 0 0 3606900 3229800 3801400 4424800 16121000 0 7295700 6439900 5583300 1536 73 1488 30252;30253;30254;30255;30256;30257;30258;30259;30260;30261;30262;30263;30264;30265;30266;30267;30268;30269;30270;30271;30272;30273;30274;30275;30276 18744;18745;18746;18747;18748;18749 18744 4 ALTMSLAER Unmodified 990.51682 0.51681584 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.121 24.869 2 0.0068112 8253 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 69.598 50.867 345000000 51278000 52485000 49517000 4803600 3134400 3509200 37426000 37592000 38282000 1932100 2130200 2209700 9744200 9363000 6391800 0 0 0 12306000 10267000 12632000 0 0 0 1537 1376 1489 30277;30278;30279;30280;30281;30282;30283;30284;30285;30286;30287;30288;30289;30290;30291;30292;30293;30294 18750;18751;18752 18751 2 ALTPFIDR Unmodified 931.51272 0.51271674 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.999 30.416 2 0.0003704 13657 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 143 139.15 2732600000 238210000 229220000 239330000 5960600 5027400 4484100 218480000 248850000 228340000 5353200 3981900 3647200 182970000 160690000 169280000 0 0 0 256270000 280980000 242920000 3102400 3232000 2273800 1538 295 1490 30295;30296;30297;30298;30299;30300;30301;30302;30303;30304;30305;30306;30307;30308;30309;30310;30311;30312;30313;30314;30315 18753;18754;18755;18756;18757;18758;18759;18760;18761;18762;18763;18764;18765;18766;18767;18768;18769 18768 17 ALTTFTGLPHR Unmodified 1212.6615 0.66150624 1098 P14900 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 25.846 24.793 2;3 0.0093269 11434 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 58.676 51.788 372240000 33909000 31907000 33065000 0 0 0 34675000 35144000 33512000 0 0 0 21199000 22892000 21609000 0 0 0 35083000 37429000 31820000 0 0 0 1539 1098 1491 30316;30317;30318;30319;30320;30321;30322;30323;30324;30325;30326;30327;30328;30329;30330;30331;30332;30333;30334;30335;30336;30337 18770;18771;18772;18773;18774;18775;18776;18777 18771 4 ALTVSPDQVLQLTPEK Unmodified 1737.9513 0.95126548 1320 P28632 holD DNA polymerase III subunit psi yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.846 44.381 2 4.8376E-10 21643 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142.97 127.43 80115000 8460600 12868000 9766700 0 0 0 5047800 4539700 4698600 0 0 0 5478500 3484900 3512000 0 0 0 9070000 7696400 5492600 0 0 0 1540 1320 1492 30338;30339;30340;30341;30342;30343;30344;30345;30346;30347;30348;30349 18778;18779;18780;18781;18782 18781 5 ALVAENMDLPAIPPR Unmodified 1605.8549 0.85486267 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 2 2 1 1 1 2 2 2 1 1 44.023 42.574 2 2.9179E-11 20644 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 158.05 138.29 106080000 0 21772000 20124000 0 0 0 5035200 0 4885400 0 0 0 2645800 13009000 8952200 0 0 0 20426000 3249100 5980000 0 0 0 1541 1233 1493 30350;30351;30352;30353;30354;30355;30356;30357;30358;30359;30360;30361;30362;30363;30364;30365 18783;18784;18785;18786;18787;18788;18789 18785 2 ALVAGGVR Unmodified 741.44972 0.44972255 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 2 2 2 2 2 14.087 14.945 2 0.00046668 4385 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 137.44 90.037 6594600000 4333900 443080000 430560000 0 2021800 1972700 825410000 874080000 821090000 0 0 0 548120000 478620000 487660000 0 0 0 535630000 546730000 595260000 0 0 0 1542 490 1494 30366;30367;30368;30369;30370;30371;30372;30373;30374;30375;30376;30377;30378;30379;30380;30381;30382;30383;30384;30385;30386;30387;30388;30389 18790;18791;18792;18793;18794;18795;18796;18797;18798;18799;18800 18800 11 ALVAVNLASEEPYHNALNEK Unmodified 2181.1066 0.10659692 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 1 35.466 33.875 2;3 8.8038E-46 16305 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 305.69 293.42 3068100000 278920000 258190000 263020000 9200400 10852000 9677400 391870000 415480000 420260000 19662000 19039000 22293000 187740000 197230000 170430000 5258500 5286200 6131400 121590000 116890000 132200000 6846200 0 0 1543 585 1495 30390;30391;30392;30393;30394;30395;30396;30397;30398;30399;30400;30401;30402;30403;30404;30405;30406;30407;30408;30409;30410;30411;30412;30413;30414;30415;30416;30417;30418;30419;30420;30421;30422;30423;30424;30425;30426 18801;18802;18803;18804;18805;18806;18807;18808;18809;18810;18811;18812;18813;18814;18815;18816;18817;18818;18819;18820;18821;18822;18823;18824;18825;18826;18827 18818 27 ALVDAELAR Unmodified 956.5291 0.52909508 454 P0A8R0 rraA Regulator of ribonuclease activity A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.259 24.208 2 0.00023305 10683 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.69 82.037 506240000 64893000 69770000 56807000 0 0 0 33531000 33423000 35163000 0 0 0 34621000 35037000 32911000 0 0 0 37823000 40527000 31739000 0 0 0 1544 454 1496 30427;30428;30429;30430;30431;30432;30433;30434;30435;30436;30437;30438;30439 18828;18829;18830;18831;18832;18833;18834;18835;18836;18837;18838 18834 11 ALVDAGYDGIVSAGVGNGNLYK Unmodified 2152.08 0.08004782 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 45.099 43.592 2 7.9696E-36 21457 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 287.14 280.1 113110000 0 0 0 0 0 0 22485000 17688000 16889000 0 0 0 11017000 10667000 9983300 0 0 0 8719900 9252400 6408700 0 0 0 1545 40 1497 30440;30441;30442;30443;30444;30445;30446;30447;30448 18839;18840;18841;18842;18843;18844;18845;18846;18847 18841 9 ALVEAGVKPCGLGAR Unmodified 1496.8133 0.81333221 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 1 1 2 1 21.575 21.69 2;3 2.6536E-11 8605 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 201.33 195.37 4557800000 517810000 508060000 431380000 1871200 2202000 2038000 567680000 579070000 560660000 1511400 985200 0 91194000 423090000 452650000 0 0 0 140040000 145930000 131100000 560540 0 0 1546 1294 1498 30449;30450;30451;30452;30453;30454;30455;30456;30457;30458;30459;30460;30461;30462;30463;30464;30465;30466;30467;30468;30469;30470;30471;30472;30473;30474;30475 18848;18849;18850;18851;18852;18853;18854;18855;18856;18857;18858;18859;18860;18861;18862;18863;18864;18865;18866;18867 18860 20 ALVEMHK Unmodified 826.43711 0.43710895 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.159 13.003 2 0.022706 3790 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 74.415 67.065 804510000 124840000 0 106130000 0 0 0 100970000 95148000 116680000 0 0 0 48007000 47533000 43790000 0 0 0 0 60104000 61300000 0 0 0 1547 313 1499 30476;30477;30478;30479;30480;30481;30482;30483;30484;30485;30486 18868;18869;18870 18868 3 ALVEQEPSDNDLAEEELLSQGATQR Unmodified 2741.2992 0.29916131 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 3 2 2 2 2 2 2 2 2 2 3 3 2 1 2 1 1 42.389 40.903 2;3 6.4093E-41 15489 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 276.26 264.74 3732800000 0 5860000 5185100 0 0 0 64234000 55666000 56109000 26520000 23328000 24721000 36567000 43714000 38494000 1072200000 966490000 1264000000 18479000 4303200 21725000 0 2251600 3007700 1548 1089 1500 30487;30488;30489;30490;30491;30492;30493;30494;30495;30496;30497;30498;30499;30500;30501;30502;30503;30504;30505;30506;30507;30508;30509;30510;30511;30512;30513;30514;30515;30516;30517;30518;30519;30520;30521;30522 18871;18872;18873;18874;18875;18876;18877;18878;18879;18880;18881;18882;18883;18884;18885;18886;18887;18888;18889;18890;18891;18892 18873 22 ALVGAPDGSQIIR Unmodified 1295.7197 0.7197494 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.199 29.73 2 3.989E-06 14001 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 129.85 123.55 860400000 108030000 93523000 95673000 0 722110 810280 62192000 57305000 55201000 1158400 0 0 56878000 64352000 52185000 0 0 0 72495000 69399000 70480000 0 0 0 1549 137 1501 30523;30524;30525;30526;30527;30528;30529;30530;30531;30532;30533;30534;30535;30536;30537 18893;18894;18895;18896;18897;18898;18899;18900;18901;18902;18903;18904 18896 12 ALVGIFLNDQYVK Unmodified 1478.8133 0.81331543 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.337 47.081 2 8.7595E-06 22797 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.83 105.11 269440000 89788000 77645000 74248000 1432400 1376500 1077500 0 0 0 0 0 0 2555100 2429100 3024100 0 0 0 4588300 5259000 6020300 0 0 0 1550 1173 1502 30538;30539;30540;30541;30542;30543;30544;30545;30546;30547;30548;30549 18905;18906;18907 18907 3 ALVGNLK Unmodified 713.44357 0.44357454 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 16.564 17.26 1;2 0.00011956 6131 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 148.37 87.244 350030000 29085000 29525000 0 1378000 1518300 1558100 38376000 0 41526000 4444000 3777700 3171900 26617000 28459000 21369000 0 0 0 37305000 44796000 37123000 0 0 0 1551 804 1503 30550;30551;30552;30553;30554;30555;30556;30557;30558;30559;30560;30561;30562;30563;30564;30565;30566;30567;30568;30569;30570;30571;30572;30573;30574 18908;18909;18910;18911;18912;18913;18914;18915;18916;18917;18918;18919;18920 18913 12 ALVIVESPAK Unmodified 1025.6121 0.61209643 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.936 24.781 2 0.0002821 11049 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.71 108.4 1028900000 72600000 69844000 68903000 0 0 805190 94843000 83017000 80708000 4422900 4887200 0 77692000 77390000 75773000 0 0 7603300 101980000 100290000 86042000 8257500 8489700 5396900 1552 124 1504 30575;30576;30577;30578;30579;30580;30581;30582;30583;30584;30585;30586;30587;30588;30589;30590;30591;30592;30593 18921;18922;18923;18924;18925;18926;18927;18928;18929;18930;18931;18932;18933 18928 13 ALVNNPR Unmodified 782.43989 0.43988615 1796 P75957 lolD Lipoprotein-releasing system ATP-binding protein LolD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 11.888 12.849 2 0.016187 2673 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 80.999 67.791 75831000 0 15768000 14898000 0 2614600 2568800 0 0 0 0 0 0 15771000 12109000 12101000 0 0 0 0 0 0 0 0 0 1553 1796 1505 30594;30595;30596;30597;30598;30599;30600 18934;18935 18934 2 ALVPVCR Unmodified 813.45309 0.45309337 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.052 19.453 2 0.0023035 7354 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.67 110.45 1412200000 142680000 134020000 121320000 2440900 2451500 2349300 301010000 289740000 242740000 6856900 6236300 5520100 23599000 23326000 20210000 0 0 0 30351000 29168000 26806000 0 634460 727430 1554 1191 1506 30601;30602;30603;30604;30605;30606;30607;30608;30609;30610;30611;30612;30613;30614;30615;30616;30617;30618;30619;30620 18936;18937;18938;18939;18940;18941;18942;18943;18944;18945;18946;18947;18948;18949;18950 18945 15 ALVQESIYER Unmodified 1206.6245 0.62445203 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 25.224 24.133 2 1.8844E-06 10698 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.11 121.33 1004700000 272440000 254750000 228180000 3841100 3010500 3378800 82129000 82178000 74806000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1555 1486 1507 30621;30622;30623;30624;30625;30626;30627;30628;30629 18951;18952;18953 18953 3 ALVQHNK Unmodified 808.45554 0.45553621 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.8945 5.799 2 0.0029824 1167 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.88 47.883 1920600000 0 0 0 0 0 1752400000 31046000 0 23744000 0 0 0 18452000 16163000 14931000 0 0 0 18622000 23407000 21833000 0 0 0 1556 819 1508 30630;30631;30632;30633;30634;30635;30636;30637;30638 18954;18955;18956;18957;18958;18959;18960 18956 3 ALVSEMLR Unmodified 917.50044 0.50043749 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.409 28.125 2 0.00030221 13019 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.94 110.76 839260000 87297000 87507000 73700000 612790 0 671330 83461000 79624000 72447000 0 0 0 51646000 54788000 58881000 0 0 0 69672000 66851000 52106000 0 0 0 1557 148 1509 30639;30640;30641;30642;30643;30644;30645;30646;30647;30648;30649;30650;30651;30652 18961;18962;18963;18964;18965;18966;18967;18968;18969;18970 18963 10 ALVSHPR Unmodified 778.44497 0.44497152 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.444 11.111 2 0.0021324 2615 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.7 112.22 879480000 118500000 108030000 118010000 2476900 69896 4381100 87585000 71721000 78082000 0 8699000 0 43536000 0 55280000 10160000 6747600 5793100 56337000 52459000 51624000 0 0 0 1558 570 1510 30653;30654;30655;30656;30657;30658;30659;30660;30661;30662;30663;30664;30665;30666;30667;30668;30669;30670 18971;18972;18973;18974;18975;18976;18977;18978;18979;18980;18981 18974 11 ALVSPEAIGSLIVTK Unmodified 1496.8814 0.881395 1356 P31063 yedD Uncharacterized lipoprotein YedD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 50.212 48.84 2;3 0.0021074 19629 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 62.377 59.816 147280000 2119400 0 0 0 767140 781920 7155100 0 8966700 9052500 5633500 7548900 13140000 10860000 14817000 1575300 0 0 21901000 21927000 19533000 1500100 0 0 1559 1356 1511 30671;30672;30673;30674;30675;30676;30677;30678;30679;30680;30681;30682;30683;30684;30685;30686;30687;30688;30689;30690;30691;30692;30693;30694;30695;30696 18982;18983;18984;18985;18986;18987 18983 3 ALVTGGDSGIGR Unmodified 1101.5778 0.57783619 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 18.983 19.384 2 0.02853 7601 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 51.445 23.271 1047900000 231610000 228410000 175290000 523290 554240 0 128770000 147530000 134610000 0 0 643160 0 0 0 0 0 0 0 0 0 0 0 0 1560 995 1512 30697;30698;30699;30700;30701;30702;30703;30704;30705 18988;18989;18990;18991 18989 4 ALVVDDEFHLIGMITVK Unmodified 1899.0176 0.017570905 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 2 2 1 1 2 2 2 2 2 1 1 53.581 52.151 3 5.0924E-05 24268 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 80.609 76.706 511870000 49558000 36307000 26552000 14530000 6135900 9312800 42348000 36672000 19267000 0 1019200 0 49440000 57995000 36833000 0 0 0 53656000 33176000 34860000 0 4209900 0 1561 788 1513 30706;30707;30708;30709;30710;30711;30712;30713;30714;30715;30716;30717;30718;30719;30720;30721;30722;30723;30724;30725;30726;30727;30728;30729;30730;30731;30732;30733 18992;18993;18994;18995;18996;18997;18998;18999;19000;19001;19002;19003;19004;19005;19006;19007;19008;19009;19010;19011 19009 11 ALVVGEPTFGK Unmodified 1116.6179 0.61791009 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.841 30.353 2 0.00019201 14324 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.52 88.135 663510000 57238000 63482000 50406000 1371200 1539600 1333400 46337000 50821000 50397000 0 0 957330 45397000 39382000 38983000 0 0 0 64568000 68535000 76556000 1831600 2056700 2315600 1562 1221 1514 30734;30735;30736;30737;30738;30739;30740;30741;30742;30743;30744;30745;30746;30747;30748;30749;30750;30751;30752 19012;19013 19012 2 ALWLLAGSASR Unmodified 1143.64 0.64004252 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.41 41.874 2 2.8568E-07 19397 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 189.7 185.72 1347200000 131520000 143620000 109810000 3666000 3710200 3477900 120150000 105660000 101340000 0 0 0 92909000 82559000 93977000 0 0 0 123060000 108790000 123010000 0 0 0 1563 784 1515 30753;30754;30755;30756;30757;30758;30759;30760;30761;30762;30763;30764;30765;30766;30767 19014;19015;19016;19017;19018;19019;19020;19021;19022;19023;19024;19025;19026;19027;19028 19028 15 ALWNQPAGHLEADETLVEAAAR Unmodified 2361.1713 0.17132244 864 P0AEI6 nudJ Phosphatase NudJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.172 40.473 3 1.1058E-21 19849 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 159.78 152.79 301280000 33050000 36453000 33687000 0 0 0 17826000 16539000 13238000 0 0 0 22606000 22675000 15399000 0 0 0 28421000 28014000 33375000 0 0 0 1564 864 1516 30768;30769;30770;30771;30772;30773;30774;30775;30776;30777;30778;30779 19029;19030;19031;19032;19033;19034;19035;19036;19037;19038;19039;19040 19035 12 ALWPEQTATTGDYR Unmodified 1607.758 0.7579854 1852 P76341 hiuH 5-hydroxyisourate hydrolase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 33.372 31.863 2 0.00023905 15186 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 82.008 67.85 69984000 14988000 13387000 13500000 0 0 0 5705600 4246500 3940500 0 0 0 0 0 0 0 0 0 4297000 5009500 4910800 0 0 0 1565 1852 1517 30780;30781;30782;30783;30784;30785;30786;30787;30788 19041 19041 1 ALWPLGK Unmodified 783.46431 0.46430998 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.527 34.85 2 0.11564 16690 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 51.036 47.183 443780000 54906000 50036000 47699000 0 0 0 38535000 39337000 40136000 0 323320 0 23296000 21234000 25169000 0 0 0 37484000 35556000 29766000 300300 0 0 1566 43 1518 30789;30790;30791;30792;30793;30794;30795;30796;30797;30798;30799;30800;30801;30802 19042;19043;19044;19045;19046;19047;19048;19049;19050;19051;19052;19053;19054;19055;19056;19057;19058;19059;19060;19061;19062;19063;19064;19065 19059 24 ALYAPTR Unmodified 790.43374 0.43373813 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.805 15.581 2 0.055767 4918 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 75.269 24.962 213440000 28788000 29421000 26629000 0 0 0 19175000 12686000 13575000 0 0 0 11774000 12372000 9746500 0 0 0 24854000 24416000 0 0 0 0 1567 623 1519 30803;30804;30805;30806;30807;30808;30809;30810;30811;30812;30813 19066;19067;19068 19068 0 ALYCVATTGK Unmodified 1082.543 0.54303059 1308 P27830 rffG dTDP-glucose 4,6-dehydratase 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.258 19.779 2 0.00019564 7851 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.67 114.32 281700000 12783000 12154000 0 0 0 0 29314000 27693000 26419000 0 0 0 25111000 25189000 16707000 0 0 0 36759000 38436000 31140000 0 0 0 1568 1308 1520 30814;30815;30816;30817;30818;30819;30820;30821;30822;30823;30824 19069;19070;19071;19072;19073;19074 19069 6 ALYDATK Unmodified 780.40177 0.4017693 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.605 14.515 2 0.015868 4607 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.32 60.336 558270000 41496000 18122000 37040000 402850 505670 515120 53463000 54953000 53618000 0 0 0 43951000 41110000 37209000 0 0 0 65561000 59707000 50622000 0 0 0 1569 828 1521 30825;30826;30827;30828;30829;30830;30831;30832;30833;30834;30835;30836;30837;30838;30839 19075;19076;19077;19078;19079;19080;19081;19082;19083 19078 8 ALYDMVDVNVYQENIFHTK Unmodified 2298.0991 0.099068703 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 49.896 48.536 2;3 5.425E-37 23892 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 240.59 238.95 1008100000 208880000 189920000 175250000 0 0 0 32066000 28194000 0 0 0 0 53994000 48880000 50186000 0 0 0 72206000 70822000 77703000 0 0 0 1570 340 1522 30840;30841;30842;30843;30844;30845;30846;30847;30848;30849;30850;30851;30852;30853;30854;30855;30856;30857;30858;30859 19084;19085;19086;19087;19088;19089 19086 6 ALYLTVDR Unmodified 949.52328 0.52328142 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.96 26.911 2 0.00071571 12722 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 126.2 44.34 204180000 8830800 7962700 12171000 0 0 0 23853000 20268000 18900000 0 0 0 20152000 18290000 17580000 3602400 5558500 0 17690000 14099000 15218000 0 0 0 1571 1961 1523 30860;30861;30862;30863;30864;30865;30866;30867;30868;30869;30870;30871;30872;30873 19090;19091;19092;19093;19094 19091 5 ALYPCPLHGISEDDAIASIHR Unmodified 2334.1427 0.14266485 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 2 1 2 2 2 1 2 2 2 2 1 1 36.747 35.003 3;4 1.0331E-15 16732 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.87 150.64 2732600000 696560000 531890000 584210000 1654500 1844100 2244700 154850000 163960000 169870000 7545200 8915700 9401600 43053000 34119000 45133000 0 0 0 97679000 88701000 88724000 0 1147300 1102900 1572 1194 1524 30874;30875;30876;30877;30878;30879;30880;30881;30882;30883;30884;30885;30886;30887;30888;30889;30890;30891;30892;30893;30894;30895;30896;30897;30898;30899;30900;30901;30902;30903;30904;30905;30906;30907 19095;19096;19097;19098;19099;19100;19101;19102;19103;19104;19105;19106;19107;19108;19109;19110;19111;19112;19113;19114;19115;19116 19113 22 ALYTVVTEGK Unmodified 1079.5863 0.58627561 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.567 24.477 2 2.5203E-05 10717 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.19 119.3 2298600000 87244000 74838000 68038000 0 595320 0 207800000 188210000 212640000 0 0 0 201180000 181470000 160800000 0 0 0 325950000 303700000 286160000 0 0 0 1573 1496 1525 30908;30909;30910;30911;30912;30913;30914;30915;30916;30917;30918;30919;30920 19117;19118;19119;19120;19121;19122;19123;19124;19125;19126;19127 19124 11 ALYVGISSYSPER Unmodified 1440.7249 0.72489436 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 34.511 33.051 2 4.9913E-09 16176 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 170.47 167.95 349090000 65233000 75433000 64148000 0 0 583450 30169000 31139000 24347000 0 0 0 8505700 9597700 10989000 0 0 0 9596900 8780900 10571000 0 0 0 1574 1958 1526 30921;30922;30923;30924;30925;30926;30927;30928;30929;30930;30931;30932;30933 19128;19129;19130;19131;19132;19133 19128 6 AMAEALQWHLLDSGAIYR Unmodified 2044.02 0.020030521 247 P0A6I0 cmk Cytidylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.641 46.239 2;3 6.1297E-23 22536 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 200.16 177.24 788180000 69519000 76315000 60056000 0 0 0 66679000 64539000 60233000 0 0 0 51908000 58086000 45306000 0 0 0 74492000 83907000 77144000 0 0 0 1575 247 1527 30934;30935;30936;30937;30938;30939;30940;30941;30942;30943;30944;30945;30946;30947;30948;30949;30950;30951;30952;30953;30954;30955;30956;30957 19134;19135;19136;19137;19138;19139;19140;19141;19142;19143;19144;19145;19146;19147 19140 14 AMAGLIDGISQK Unmodified 1202.6329 0.63290823 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.896 31.355 2 1.1427E-11 14910 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 185.6 176.18 468540000 82662000 75002000 74813000 0 0 458190 31374000 28418000 33028000 2744700 0 0 17672000 21488000 20555000 0 0 0 23266000 29146000 27913000 0 0 0 1576 1850 1528 30958;30959;30960;30961;30962;30963;30964;30965;30966;30967;30968;30969;30970;30971 19148;19149;19150;19151;19152;19153;19154;19155;19156;19157;19158;19159 19154 12 AMAGSVVHTGEIGAGNVTK Unmodified 1797.9043 0.90433206 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 2 2 2 20.022 20.448 2;3 6.385E-81 7857 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 325.24 321.59 3001100000 50256000 277000000 278690000 1003500 1025100 1201600 317830000 296970000 282080000 0 0 0 277280000 249360000 250630000 1267500 0 0 238720000 239720000 238060000 0 0 0 1577 671 1529 30972;30973;30974;30975;30976;30977;30978;30979;30980;30981;30982;30983;30984;30985;30986;30987;30988;30989;30990;30991;30992;30993;30994;30995;30996;30997;30998;30999 19160;19161;19162;19163;19164;19165;19166;19167;19168;19169;19170;19171;19172;19173;19174;19175;19176;19177;19178;19179;19180;19181 19173 22 AMALELVR Unmodified 901.50552 0.50552287 1422 P33368 yohF Uncharacterized oxidoreductase YohF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 2 1 1 1 1 1 32.069 30.647 2 8.1081E-05 14471 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.89 136.36 163850000 31162000 28966000 27755000 0 868080 0 20495000 21583000 17802000 0 0 0 0 0 2434500 0 0 0 4386700 3668900 4733100 0 0 0 1578 1422 1530 31000;31001;31002;31003;31004;31005;31006;31007;31008;31009;31010;31011 19182;19183;19184;19185;19186;19187 19185 6 AMANVGEMTLMSHFAEAEHPDGISGAMAR Unmodified 3030.3456 0.34561647 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 2 1 1 2 1 43.236 41.758 3;4 1.606E-16 20217 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.2 150.13 889840000 218890000 194940000 162900000 0 516340 0 18282000 18147000 16158000 0 0 0 24634000 25346000 25874000 0 0 0 64650000 62349000 57148000 0 0 0 1579 1326 1531 31012;31013;31014;31015;31016;31017;31018;31019;31020;31021;31022;31023;31024;31025;31026;31027;31028;31029 19188;19189;19190;19191;19192;19193;19194;19195;19196;19197 19196 10 AMASGVSACLATPFK Unmodified 1509.732 0.73197035 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 36.428 34.871 2;3 1.5132E-12 17117 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 179.19 179.19 4887000000 583100000 680350000 533380000 0 0 0 347040000 361650000 361750000 0 0 0 360290000 292250000 272550000 0 0 0 367650000 368730000 358220000 0 0 0 1580 489 1532 31030;31031;31032;31033;31034;31035;31036;31037;31038;31039;31040;31041;31042;31043;31044;31045;31046;31047;31048;31049;31050;31051;31052;31053 19198;19199;19200;19201;19202;19203;19204;19205;19206;19207;19208;19209;19210;19211;19212;19213;19214;19215 19200 14 AMAVIDPVK Unmodified 942.52084 0.52083858 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 2 1 1 1 1 1 1 25.692 24.602 2 0.00090178 11221 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 98.299 87.483 1854900000 146580000 150470000 133120000 0 0 0 145640000 146360000 145950000 0 0 0 161030000 150450000 143270000 0 0 0 170520000 172530000 188940000 0 0 0 1581 63 1533 31054;31055;31056;31057;31058;31059;31060;31061;31062;31063;31064;31065;31066 19216;19217;19218 19218 3 AMAWEEHDE Unmodified 1116.4182 0.418224 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.691 20.836 2 0.00020818 8118 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.86 125.86 7870900000 141290000 162350000 118460000 1429400 0 0 893580000 838120000 869710000 3459300 3310900 2598900 903050000 913760000 696610000 4174700 2346800 3077400 688370000 821580000 794460000 3367600 2957900 2826700 1582 239 1534 31067;31068;31069;31070;31071;31072;31073;31074;31075;31076;31077;31078;31079;31080;31081;31082;31083;31084;31085;31086;31087;31088 19219;19220;19221;19222;19223;19224;19225;19226;19227;19228;19229;19230;19231;19232;19233 19230 15 AMAWEEHDE Oxidation (M) 1132.4131 0.41313863 239 P0A6F3 glpK Glycerol kinase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 3 3 2 4 2 3 15.772 16.498 2 0.001028 4745 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 100.74 100.74 213680000 0 0 0 0 0 0 26626000 41783000 23226000 0 0 0 29044000 16232000 17159000 0 0 0 21888000 15094000 22630000 0 0 0 1583 239 1534 31089;31090;31091;31092;31093;31094;31095;31096;31097;31098;31099;31100;31101;31102;31103;31104;31105;31106;31107;31108;31109;31110;31111;31112;31113 19234;19235;19236;19237;19238;19239;19240;19241;19242;19243;19244;19245;19246;19247;19248;19249;19250;19251;19252 19251 88 17 AMAYAQGADYLEQDLVMTK Unmodified 2116.9809 0.9809274 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.54 46.15 2;3 3.6677E-16 21728 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 194.86 192.03 473670000 24062000 21012000 23896000 0 0 0 44595000 35945000 35637000 0 0 0 63900000 60757000 53625000 0 0 0 36751000 35996000 37497000 0 0 0 1584 213 1535 31114;31115;31116;31117;31118;31119;31120;31121;31122;31123;31124;31125;31126;31127;31128;31129;31130;31131;31132;31133;31134;31135;31136;31137 19253;19254;19255;19256;19257;19258;19259;19260;19261;19262;19263;19264;19265;19266 19262 14 AMDEQGK Unmodified 777.3327 0.33270346 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 6.3868 7.1093 2 0.0008957 1069 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.98 127.4 4851600000 569950000 435970000 479460000 0 0 0 385300000 326550000 439310000 0 0 0 381880000 337270000 383650000 15126000 0 32991000 347100000 371650000 345360000 0 0 0 1585 728 1536 31138;31139;31140;31141;31142;31143;31144;31145;31146;31147;31148;31149;31150;31151;31152;31153;31154 19267;19268;19269;19270;19271;19272;19273;19274;19275;19276;19277;19278;19279;19280;19281 19271 15 AMDEQGK Oxidation (M) 793.32762 0.32761808 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 4.2953 5.1082 2 0.017321 645 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.614 65.848 79933000 12787000 11826000 9630200 0 0 0 0 0 0 0 0 0 0 2812400 495870 0 0 0 12384000 14810000 15188000 0 0 0 1586 728 1536 31155;31156;31157;31158;31159;31160;31161;31162;31163;31164 19282;19283;19284;19285;19286;19287 19283 376 6 AMDVYCHR Unmodified 1050.4375 0.43751966 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 2 2 2 1 1 12.364 13.011 2;3 0.00095782 3469 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 104.45 104.45 5058200000 195220000 253280000 208330000 0 0 1228800 559330000 502440000 499870000 1296000 1539700 1864500 572390000 501840000 488380000 2742600 2767000 2003800 440970000 399480000 421050000 0 1255100 885240 1587 224 1537 31165;31166;31167;31168;31169;31170;31171;31172;31173;31174;31175;31176;31177;31178;31179;31180;31181;31182;31183;31184;31185;31186;31187;31188;31189;31190;31191;31192;31193;31194;31195;31196;31197;31198;31199 19288;19289;19290;19291;19292;19293;19294;19295;19296;19297;19298;19299;19300;19301 19301 13 AMDVYCHR Oxidation (M) 1066.4324 0.43243428 224 P0A6A3 ackA Acetate kinase yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.54 11.395 3 0.065303 2567 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 42.869 42.869 210480000 0 0 0 0 0 0 40706000 31142000 32471000 0 0 0 20763000 19530000 18003000 0 0 0 23839000 24027000 0 0 0 0 1588 224 1537 31200;31201;31202;31203;31204;31205;31206;31207 19302 19302 1 AMEAPLR Unmodified 786.40581 0.40580882 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.735 16.383 2 0.0012842 4329 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 114.54 89.541 14859000000 1286100000 1220800000 1102500000 0 0 29616000 1404700000 1392100000 1287100000 0 0 29563000 1138400000 858810000 926420000 18086000 0 12399000 1414300000 1391300000 1314100000 0 32518000 0 1589 240 1538 31208;31209;31210;31211;31212;31213;31214;31215;31216;31217;31218;31219;31220;31221;31222;31223;31224;31225 19303;19304;19305;19306;19307;19308;19309;19310;19311;19312;19313;19314;19315;19316 19303 12 AMEAPLR Oxidation (M) 802.40072 0.40072345 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 11.986 12.636 2 0.025857 3416 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 76.847 59.08 510100000 0 0 0 2668200 1797200 1464200 0 179070000 0 0 0 1736100 0 0 0 1372900 0 0 154750000 0 162710000 2279300 2249600 0 1590 240 1538 31226;31227;31228;31229;31230;31231;31232;31233;31234;31235 19317;19318 19318 95 2 AMEEAMIK Unmodified 921.42997 0.42997466 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 18.057 18.664 2 0.00098544 7054 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.78 99.015 395480000 50163000 49180000 42671000 0 0 404970 28380000 29525000 27529000 0 0 0 24603000 24855000 21760000 0 0 0 29466000 33388000 33554000 0 0 0 1591 740 1539 31236;31237;31238;31239;31240;31241;31242;31243;31244;31245;31246;31247;31248 19319;19320;19321;19322;19323;19324;19325;19326;19327;19328;19329 19320 11 AMEFGAR Unmodified 780.35886 0.35885863 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 16.386 17.13 1 0.16834 5991 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 56.51 46.204 57206000 18059000 19826000 17020000 0 0 0 0 2301500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1592 26 1540 31249;31250;31251;31252 19330 19330 1 AMEIVYDEADLR Unmodified 1423.6653 0.66533057 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 2 1 36.771 35.268 2;3 6.125E-06 17084 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.91 104.19 536630000 129480000 106700000 116240000 0 0 0 0 0 0 0 0 0 13351000 10105000 12728000 0 0 0 43968000 52750000 51295000 0 0 0 1593 65 1541 31253;31254;31255;31256;31257;31258;31259;31260;31261;31262;31263;31264;31265 19331;19332;19333 19331 1 AMEIVYDEADLRR Unmodified 1579.7664 0.7664416 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.745 28.38 3 1.7993E-06 10443 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 130.01 123.12 717110000 141360000 141070000 124860000 2285600 2030800 1781800 2433800 4095400 0 1694900 1352300 0 24117000 17263000 16438000 0 2322700 1782000 66074000 72885000 76815000 5959700 4947800 5540600 1594 65 1542 31266;31267;31268;31269;31270;31271;31272;31273;31274;31275;31276;31277;31278;31279;31280;31281;31282;31283;31284;31285;31286 19334;19335;19336;19337 19336 4 AMEMVAASK Unmodified 936.44087 0.4408737 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.383 15.943 2 0.000772 3929 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 101.64 95.189 1331000000 34189000 27442000 29679000 10376000 9507800 9267000 92168000 98045000 100430000 29543000 24919000 26114000 101450000 112830000 136940000 9445600 6701300 6569200 142080000 123000000 124950000 27281000 24889000 23222000 1595 644 1543 31287;31288;31289;31290;31291;31292;31293;31294;31295;31296;31297;31298;31299;31300;31301;31302;31303;31304;31305;31306;31307;31308;31309;31310 19338;19339;19340;19341;19342;19343;19344;19345;19346;19347;19348;19349;19350;19351;19352 19349 14 AMEYGAENAR Unmodified 1110.4764 0.47640759 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.9 13.753 2 4.5348E-05 4123 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.1 130.41 255240000 41336000 43905000 38759000 3123700 2478700 2506100 19621000 16685000 13146000 0 0 0 11832000 11690000 13754000 0 0 0 14677000 11650000 8839600 0 0 1237100 1596 235 1544 31311;31312;31313;31314;31315;31316;31317;31318;31319;31320;31321;31322;31323;31324;31325;31326 19353;19354;19355 19354 1 AMGCNTTGVR Unmodified 1065.4695 0.46954807 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.801 12.335 2 9.6772E-09 2622 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 178.83 174.47 519360000 0 0 0 5419300 4355100 4089300 0 0 135550000 21380000 18596000 17853000 0 131280000 135540000 9439800 0 10951000 0 0 0 9768700 7900700 7239000 1597 882 1545 31327;31328;31329;31330;31331;31332;31333;31334;31335;31336;31337;31338;31339;31340;31341 19356;19357;19358;19359;19360;19361;19362;19363;19364;19365;19366;19367;19368;19369;19370 19357 15 AMGIEAGK Unmodified 775.38982 0.38982441 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 13.019 13.931 2 0.01678 4210 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 67.981 47.426 126630000 12467000 0 12834000 0 0 0 0 0 0 0 0 0 24328000 27282000 26335000 0 0 0 0 0 23384000 0 0 0 1598 509 1546 31342;31343;31344;31345;31346;31347 19371;19372;19373;19374 19371 4 AMGLPLLAVSGVEADDVIGTLAR Unmodified 2267.2195 0.21951819 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By MS/MS 1 1 55.55 55.606 3 6.6304E-10 21100 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 112.58 111.15 75550000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40588000 0 34962000 0 0 0 0 0 0 1599 37 1547 31348;31349 19375 19375 1 AMGLVGDILPGSTFFQGNYTDR Oxidation (M) 2374.1263 0.12634609 1993 yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 2 2 1 1 2 1 1 1 2 1 48.947 47.604 2 0.013648 23152 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 46.159 39.528 279080000 34052000 28123000 50279000 0 0 0 25971000 13773000 10070000 0 0 0 31159000 12696000 15486000 0 0 0 14374000 27895000 15199000 0 0 0 + 1600 1993 1548 31350;31351;31352;31353;31354;31355;31356;31357;31358;31359;31360;31361;31362;31363;31364;31365 19376;19377;19378;19379 19377 619 4 AMHDIIASDTFDK Unmodified 1462.6762 0.67622961 1938 P77754 spy Spheroplast protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.74 25.531 2 2.4045E-12 11588 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 189.17 183.83 259480000 31810000 30544000 30262000 0 0 0 26828000 24775000 25238000 1122300 0 0 15480000 11616000 18004000 0 0 0 14837000 11798000 17165000 0 0 0 1601 1938 1549 31366;31367;31368;31369;31370;31371;31372;31373;31374;31375;31376;31377;31378 19380;19381;19382;19383;19384;19385;19386;19387;19388;19389;19390 19386 11 AMHYMSDNASK Unmodified 1253.5169 0.51689219 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.656 12.243 2 0.00015288 2720 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 110.53 94.652 59619000 0 0 0 0 0 0 0 0 3473400 5527200 5987800 5148300 3770100 3219300 0 0 0 0 5755300 8638000 6969400 6879600 4250500 0 1602 75 1550 31379;31380;31381;31382;31383;31384;31385;31386;31387;31388;31389;31390 19391;19392;19393;19394;19395 19392 5 AMHYMSDNASKDGDQSYIR Unmodified 2187.9314 0.93135145 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 17.446 17.303 4 0.0018878 5127 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 59.502 59.093 11836000 0 0 0 0 0 0 0 0 0 4031700 5409900 0 0 0 0 0 0 2394200 0 0 0 0 0 0 1603 75 1551 31391;31392;31393 19396 19396 1 AMIAVDAWLQAEQPR Unmodified 1697.8559 0.85592531 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.206 48.759 2 1.5132E-12 23782 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.19 168.58 83343000 0 7499900 0 0 0 0 15528000 11263000 14246000 0 0 0 6794800 6625500 0 0 0 0 11809000 0 9576200 0 0 0 1604 37 1552 31394;31395;31396;31397;31398;31399;31400;31401 19397;19398;19399;19400;19401;19402;19403 19400 6 AMIEAGAAAVHFEDQLASVK Unmodified 2057.0252 0.025175478 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 10 10 2 2 2 3 5 3 2 3 2 3 2 4 45.718 44.179 2;3 3.5792E-68 20340 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 307.32 304.69 25430000000 6612900000 5854500000 6221800000 8788700 8548400 9883700 1011900000 1029400000 993700000 0 0 0 455580000 473070000 464790000 0 0 0 782700000 728720000 773220000 0 0 0 1605 517 1553 31402;31403;31404;31405;31406;31407;31408;31409;31410;31411;31412;31413;31414;31415;31416;31417;31418;31419;31420;31421;31422;31423;31424;31425;31426;31427;31428;31429;31430;31431;31432;31433;31434;31435;31436;31437;31438;31439;31440;31441;31442;31443;31444;31445;31446;31447;31448;31449;31450;31451;31452;31453;31454;31455;31456;31457;31458;31459;31460;31461;31462;31463;31464;31465 19404;19405;19406;19407;19408;19409;19410;19411;19412;19413;19414;19415;19416;19417;19418;19419;19420;19421;19422;19423;19424;19425;19426;19427;19428;19429;19430;19431;19432;19433;19434;19435;19436;19437;19438;19439;19440;19441;19442;19443;19444;19445;19446;19447;19448;19449;19450;19451;19452;19453;19454;19455;19456;19457;19458;19459;19460;19461;19462;19463;19464;19465;19466;19467;19468;19469;19470;19471;19472;19473;19474;19475;19476;19477;19478;19479;19480;19481;19482;19483;19484;19485;19486;19487;19488;19489;19490 19408 86 AMIEAGAAAVHFEDQLASVK Oxidation (M) 2073.0201 0.0200901 517 P0A9G6 aceA Isocitrate lyase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 3 3 1 1 1 1 1 1 1 1 1 39 37.379 2;3 2.0334E-17 18103 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 150.59 128.72 716910000 215290000 204530000 184240000 0 0 0 23966000 19016000 20062000 0 0 0 10457000 0 5884200 0 0 0 11239000 10503000 11290000 0 0 432140 1606 517 1553 31466;31467;31468;31469;31470;31471;31472;31473;31474;31475;31476;31477;31478;31479;31480;31481;31482;31483 19491;19492;19493;19494;19495;19496;19497;19498;19499;19500;19501;19502;19503;19504;19505;19506 19502 315 12 AMIEAGAAAVHFEDQLASVKK Unmodified 2185.1201 0.1201385 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 37.298 35.32 4 0.0026484 12286 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 55.383 52.192 64426000 20611000 0 12050000 7616800 9556400 8913300 0 0 0 2052300 2283800 1342200 0 0 0 0 0 0 0 0 0 0 0 0 1607 517 1554 31484;31485;31486;31487;31488;31489;31490;31491 19507;19508 19508 2 AMLAAEQHVVTPALER Unmodified 1734.9087 0.90868916 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 1 28.154 26.849 2;3 1.6918E-18 12530 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 220.4 214.17 1760200000 119270000 107700000 98648000 0 0 0 241340000 241000000 236520000 1870500 2345000 2369400 139130000 121030000 123400000 0 0 0 90908000 101890000 129500000 0 3242200 0 1608 554 1555 31492;31493;31494;31495;31496;31497;31498;31499;31500;31501;31502;31503;31504;31505;31506;31507;31508;31509;31510;31511;31512;31513;31514;31515;31516;31517;31518;31519;31520 19509;19510;19511;19512;19513;19514;19515;19516;19517;19518;19519;19520;19521;19522;19523;19524;19525;19526;19527;19528;19529;19530 19514 22 AMLAEVGLVGK Unmodified 1086.6107 0.61071622 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.009 33.432 2 0.00022228 15226 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 101.64 91.733 1673900000 170000000 174360000 138180000 3015300 4068200 2600100 130880000 124370000 132040000 0 0 0 109060000 110680000 101850000 0 0 0 161300000 151170000 150470000 2483000 2887400 4510200 1609 1143 1556 31521;31522;31523;31524;31525;31526;31527;31528;31529;31530;31531;31532;31533;31534;31535;31536;31537;31538 19531;19532;19533;19534;19535;19536;19537;19538;19539;19540;19541;19542;19543;19544;19545;19546 19546 15 AMLANMRDELSDALKR Unmodified 1832.9237 0.92368729 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 36.28 34.337 4 0.047096 13881 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 33.796 26.905 8955800 0 0 0 1272500 944480 909850 0 0 0 2660800 0 0 0 0 0 0 0 0 0 0 0 0 1876000 1292200 1610 787 1557 31539;31540;31541;31542;31543;31544 19547 19547 1 AMLEQQAWIGLMDQAR Unmodified 1859.9022 0.90222357 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.797 50.38 3 0.0075556 20498 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 46.926 44.801 14227000 0 0 0 1078300 1258700 1745700 0 0 0 3168300 2443200 1988700 0 0 0 0 0 0 0 0 0 1078500 1465900 0 1611 717 1558 31545;31546;31547;31548;31549;31550;31551;31552 19548 19548 1 AMLHAQSGISSDIGTTPGAR Unmodified 1968.9687 0.96872323 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 2 2 3 2 2 1 23.194 22.4 2;3 5.2059E-23 9936 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 225.85 216.84 766720000 0 0 2724500 0 0 0 101090000 96503000 92386000 0 0 0 103460000 75248000 91980000 0 0 0 70908000 64828000 66428000 0 1156500 0 1612 1467 1559 31553;31554;31555;31556;31557;31558;31559;31560;31561;31562;31563;31564;31565;31566;31567;31568;31569;31570;31571;31572;31573 19549;19550;19551;19552;19553;19554;19555;19556;19557;19558;19559;19560;19561;19562;19563;19564;19565 19552 17 AMLHFCENPGK Unmodified 1302.5849 0.58491218 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 1 19.317 19.74 2;3 2.4734E-07 7049 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 162.59 162.59 2534200000 452030000 399010000 353510000 14772000 11293000 11969000 239680000 206360000 221060000 6545100 5776200 7618400 94577000 90320000 87977000 0 0 0 98503000 114460000 113920000 1738700 1279200 1791000 1613 546 1560 31574;31575;31576;31577;31578;31579;31580;31581;31582;31583;31584;31585;31586;31587;31588;31589;31590;31591;31592;31593;31594;31595;31596;31597;31598;31599;31600;31601;31602;31603;31604;31605;31606;31607;31608;31609;31610;31611 19566;19567;19568;19569;19570;19571;19572;19573;19574;19575;19576;19577;19578;19579;19580;19581 19581 15 AMLNTLNVGPTLDPR Unmodified 1610.845 0.84502627 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.868 39.99 2 4.9832E-09 16274 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 152.85 148.7 123510000 4842000 4764700 3672100 1835200 1747400 1907000 9086200 9849800 6678300 5279100 5868000 5196300 8750000 5864500 5422300 0 0 0 9427700 11254000 8955200 3903800 4827200 4384200 1614 975 1561 31612;31613;31614;31615;31616;31617;31618;31619;31620;31621;31622;31623;31624;31625;31626;31627;31628;31629;31630;31631;31632 19582;19583;19584;19585;19586 19582 5 AMLQDIATLTGGTVISEEIGMELEK Unmodified 2648.3289 0.32887022 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 3 2 2 1 3 2 2 3 2 3 2 2 2 55.571 54.112 2;3 1.5784E-71 26899 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 353.57 345.73 7521500000 859250000 145220000 855090000 33906000 30317000 34922000 624270000 117180000 563400000 30808000 6036700 3967800 596770000 581900000 536940000 0 0 0 784100000 833950000 797810000 32957000 29040000 23657000 1615 240 1562 31633;31634;31635;31636;31637;31638;31639;31640;31641;31642;31643;31644;31645;31646;31647;31648;31649;31650;31651;31652;31653;31654;31655;31656;31657;31658;31659;31660;31661;31662;31663;31664;31665;31666;31667;31668;31669;31670;31671;31672;31673;31674;31675;31676 19587;19588;19589;19590;19591;19592;19593;19594;19595;19596;19597;19598;19599;19600;19601;19602;19603;19604;19605;19606;19607;19608;19609;19610;19611;19612 19589 26 AMMDNLQTETVINR 2 Oxidation (M) 1666.7655 0.76545532 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 22.573 21.982 2;3 9.7991E-21 7198 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 225.31 212.35 179960000 0 0 0 0 0 0 0 0 0 16115000 13253000 13526000 0 0 0 14464000 12732000 8869300 0 0 0 33848000 29803000 37348000 1616 458 1563 31677;31678;31679;31680;31681;31682;31683;31684;31685;31686;31687;31688;31689;31690;31691;31692;31693;31694 19613;19614;19615;19616;19617;19618;19619;19620;19621;19622;19623;19624;19625;19626;19627;19628;19629;19630 19627 224;225 18 AMMDNLQTETVINR Oxidation (M) 1650.7705 0.7705407 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 12 10 10 1 1 1 10 10 9 2 8 7 9 29.389 28.067 2;3 5.1592E-45 10220 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 283.58 273.89 1223400000 5589600 6598500 0 0 0 0 4162200 10712000 7262900 137630000 119750000 99891000 3306600 2806800 0 182020000 130250000 134110000 2901400 0 0 134380000 122280000 119770000 1617 458 1563 31695;31696;31697;31698;31699;31700;31701;31702;31703;31704;31705;31706;31707;31708;31709;31710;31711;31712;31713;31714;31715;31716;31717;31718;31719;31720;31721;31722;31723;31724;31725;31726;31727;31728;31729;31730;31731;31732;31733;31734;31735;31736;31737;31738;31739;31740;31741;31742;31743;31744;31745;31746;31747;31748;31749;31750;31751;31752;31753;31754;31755;31756;31757;31758;31759;31760;31761;31762;31763;31764;31765;31766;31767;31768;31769;31770;31771;31772;31773;31774;31775;31776;31777;31778;31779;31780;31781;31782;31783;31784;31785;31786;31787;31788;31789;31790;31791 19631;19632;19633;19634;19635;19636;19637;19638;19639;19640;19641;19642;19643;19644;19645;19646;19647;19648;19649;19650;19651;19652;19653;19654;19655;19656;19657;19658;19659;19660;19661;19662;19663;19664;19665;19666;19667;19668;19669;19670;19671;19672;19673;19674;19675;19676;19677;19678;19679;19680;19681;19682;19683;19684;19685;19686;19687;19688;19689;19690;19691;19692;19693;19694;19695;19696;19697;19698;19699;19700;19701;19702;19703;19704;19705;19706;19707;19708;19709;19710;19711;19712;19713;19714;19715;19716;19717;19718;19719;19720;19721;19722 19677 224;225 85 AMMDNLQTETVINR Unmodified 1634.7756 0.77562607 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 7 7 6 2 2 2 7 8 6 2 2 2 5 5 7 34.209 32.773 2;3 1.2683E-56 15212 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 313.75 297.08 27510000000 429260000 365000000 357160000 8993000 8654900 8090300 241730000 253590000 217920000 1453200000 1620800000 1836900000 274740000 250150000 256380000 3921400000 3736700000 3902400000 340790000 362730000 343840000 2632600000 2438100000 2248800000 1618 458 1563 31792;31793;31794;31795;31796;31797;31798;31799;31800;31801;31802;31803;31804;31805;31806;31807;31808;31809;31810;31811;31812;31813;31814;31815;31816;31817;31818;31819;31820;31821;31822;31823;31824;31825;31826;31827;31828;31829;31830;31831;31832;31833;31834;31835;31836;31837;31838;31839;31840;31841;31842;31843;31844;31845;31846;31847;31848;31849;31850;31851;31852;31853;31854;31855;31856;31857;31858;31859;31860;31861;31862;31863;31864;31865;31866;31867;31868;31869;31870;31871;31872;31873;31874;31875;31876;31877;31878;31879 19723;19724;19725;19726;19727;19728;19729;19730;19731;19732;19733;19734;19735;19736;19737;19738;19739;19740;19741;19742;19743;19744;19745;19746;19747;19748;19749;19750;19751;19752;19753;19754;19755;19756;19757;19758;19759;19760;19761;19762;19763;19764;19765;19766;19767;19768;19769;19770;19771;19772;19773;19774;19775;19776;19777;19778;19779;19780;19781;19782;19783;19784;19785;19786;19787;19788;19789;19790;19791;19792;19793;19794;19795;19796;19797;19798;19799;19800;19801;19802;19803;19804 19795 76 AMMDNLQTETVINRDGQEEK 2 Oxidation (M) 2353.0526 0.052588795 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 2 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 22.778 22.317 3 1.8295E-23 9140 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 191.21 191.21 153320000 0 0 0 0 0 0 0 0 0 13660000 11200000 13804000 0 0 0 17057000 13469000 16168000 0 0 0 21233000 23977000 22756000 1619 458 1564 31880;31881;31882;31883;31884;31885;31886;31887;31888;31889;31890;31891;31892;31893;31894;31895 19805;19806;19807;19808;19809;19810;19811;19812;19813;19814;19815;19816;19817 19806 224;225 13 AMMDNLQTETVINRDGQEEK Oxidation (M) 2337.0577 0.057674173 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 7 7 11 10 13 7 10 7 24.548 23.77 2;3 2.5795E-30 7554 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 216.17 215.65 1564500000 0 0 0 0 0 0 0 0 0 61889000 112260000 122230000 0 0 0 315490000 242710000 229520000 0 0 0 163540000 149450000 167370000 1620 458 1564 31896;31897;31898;31899;31900;31901;31902;31903;31904;31905;31906;31907;31908;31909;31910;31911;31912;31913;31914;31915;31916;31917;31918;31919;31920;31921;31922;31923;31924;31925;31926;31927;31928;31929;31930;31931;31932;31933;31934;31935;31936;31937;31938;31939;31940;31941;31942;31943;31944;31945;31946;31947;31948;31949;31950;31951;31952;31953;31954;31955;31956;31957;31958;31959;31960;31961;31962;31963;31964;31965;31966;31967;31968;31969;31970;31971;31972;31973;31974;31975;31976 19818;19819;19820;19821;19822;19823;19824;19825;19826;19827;19828;19829;19830;19831;19832;19833;19834;19835;19836;19837;19838;19839;19840;19841;19842;19843;19844;19845;19846;19847;19848;19849;19850;19851;19852;19853;19854;19855;19856;19857;19858;19859;19860;19861;19862;19863;19864;19865;19866;19867;19868;19869;19870;19871;19872;19873;19874;19875;19876;19877;19878;19879;19880;19881;19882;19883;19884;19885;19886;19887;19888;19889;19890;19891;19892 19823 224;225 74 AMMDNLQTETVINRDGQEEK Unmodified 2321.0628 0.062759551 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 3 4 4 1 1 1 6 6 6 1 1 1 3 3 5 28.496 27.429 2;3 9.9089E-68 10155 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 362.99 360.43 25550000000 8015600 9895200 7334000 9641200 12749000 10367000 0 5488800 4915300 1280900000 1507000000 1336300000 3177100 2615100 3003400 5936900000 4221000000 4389800000 6116400 4466000 4560000 2178800000 2398800000 2207900000 1621 458 1564 31977;31978;31979;31980;31981;31982;31983;31984;31985;31986;31987;31988;31989;31990;31991;31992;31993;31994;31995;31996;31997;31998;31999;32000;32001;32002;32003;32004;32005;32006;32007;32008;32009;32010;32011;32012;32013;32014;32015;32016;32017;32018;32019;32020;32021;32022;32023;32024;32025;32026;32027;32028;32029;32030;32031 19893;19894;19895;19896;19897;19898;19899;19900;19901;19902;19903;19904;19905;19906;19907;19908;19909;19910;19911;19912;19913;19914;19915;19916;19917;19918;19919;19920;19921;19922;19923;19924;19925;19926;19927;19928;19929 19910 37 AMMQDAGFESVDYYNLTAGVVALHR Unmodified 2757.2891 0.28907109 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.707 50.531 3 1.4728E-18 23787 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 157.59 157.19 478890000 32959000 25417000 31062000 16431000 13107000 10722000 0 0 35943000 24782000 23037000 25959000 46371000 0 26587000 1885100 0 2008700 44137000 47810000 38594000 10019000 12376000 9686600 1622 408 1565 32032;32033;32034;32035;32036;32037;32038;32039;32040;32041;32042;32043;32044;32045;32046;32047;32048;32049;32050;32051;32052 19930;19931;19932;19933;19934;19935;19936;19937;19938;19939;19940;19941;19942;19943;19944 19943 15 AMNDDDAAAK Unmodified 1020.4182 0.418224 394 P0A843 tatE Sec-independent protein translocase protein TatE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 10.386 11.241 2 0.024471 2657 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 59.35 51.659 74436000 0 0 0 0 0 0 11075000 5594000 7254500 0 0 0 10908000 5522900 6890600 0 0 0 9057000 8789800 9343900 0 0 0 1623 394 1566 32053;32054;32055;32056;32057;32058;32059;32060;32061 19945 19945 1 AMQDQVMELSR Unmodified 1306.601 0.60095617 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.957 27.701 2 1.206E-08 12794 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 179.51 171.19 421680000 27597000 27007000 22859000 0 0 0 34028000 39284000 35538000 0 0 0 36442000 29760000 33102000 0 0 0 42832000 48143000 45093000 0 0 0 1624 1421 1567 32062;32063;32064;32065;32066;32067;32068;32069;32070;32071;32072;32073 19946;19947;19948;19949;19950;19951;19952;19953;19954 19947 9 AMQEEFYLELK Unmodified 1399.6694 0.66935331 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 42.631 40.979 2 0.00015599 20124 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.14 102.76 65317000 12298000 10769000 0 801560 830640 1312400 2895900 4556600 0 0 0 0 4320400 4195900 4091800 0 0 0 7066900 5700900 6477200 0 0 0 1625 34 1568 32074;32075;32076;32077;32078;32079;32080;32081;32082;32083;32084;32085;32086 19955;19956;19957 19956 2 AMQEVLQQFAHVK Unmodified 1527.7868 0.78678311 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 36.126 34.496 2;3 1.5596E-12 15927 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 194.06 184.37 3670200000 334150000 306540000 283670000 8111100 7720100 8319000 170080000 173090000 145330000 6843600 7833100 7078000 229450000 217550000 207730000 4703000 4392800 3807700 469550000 497840000 487850000 28788000 29102000 30631000 1626 937 1569 32087;32088;32089;32090;32091;32092;32093;32094;32095;32096;32097;32098;32099;32100;32101;32102;32103;32104;32105;32106;32107;32108;32109;32110;32111;32112;32113;32114;32115;32116;32117;32118;32119;32120;32121;32122;32123;32124;32125;32126;32127;32128;32129;32130 19958;19959;19960;19961;19962;19963;19964;19965;19966;19967;19968;19969;19970;19971;19972;19973;19974;19975;19976;19977;19978;19979;19980;19981;19982;19983;19984;19985 19982 27 AMQLIAEAEGR Unmodified 1187.5969 0.59685707 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 29.211 28.017 2 1.3923E-05 12810 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.92 136.19 108440000 35374000 35425000 32661000 0 2592300 2389300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1627 46 1570 32131;32132;32133;32134;32135 19986;19987;19988 19988 3 AMSAQDLLNSR Unmodified 1204.587 0.58702067 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 30.295 28.477 2 5.9837E-08 13599 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 131.62 119.38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1628 1224 1571 32136;32137;32138 19989;19990;19991 19990 3 AMSAWGVEAR Unmodified 1076.5073 0.50731378 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.662 24.59 2 2.0725E-06 11242 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.07 145.12 1070100000 113350000 107890000 106010000 0 0 0 214140000 204040000 195810000 0 0 0 17491000 18154000 17378000 0 0 0 23840000 26556000 25381000 0 0 0 1629 1191 1572 32139;32140;32141;32142;32143;32144;32145;32146;32147;32148;32149;32150 19992;19993;19994;19995;19996;19997;19998;19999 19993 5 AMSDDEPK Unmodified 891.3644 0.36439752 1732 P69428 tatA Sec-independent protein translocase protein TatA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.708 11.55 2 0.01604 2851 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 69.198 64.373 218150000 14838000 11756000 9252100 0 894180 0 22442000 19816000 25160000 0 0 0 19038000 18589000 12121000 0 0 0 21119000 22979000 20149000 0 0 0 1630 1732 1573 32151;32152;32153;32154;32155;32156;32157;32158;32159;32160;32161;32162;32163 20000 20000 1 AMSDDEPKQDK Unmodified 1262.5449 0.54488108 1732 P69428 tatA Sec-independent protein translocase protein TatA yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 1 8.5393 9.3399 2;3 0.0001034 1300 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 119.62 118.41 494770000 26394000 27638000 15020000 4093000 3294200 3136500 27400000 23671000 20746000 24461000 0 9850700 44465000 30994000 3516500 0 0 0 79128000 69114000 70111000 11738000 0 0 1631 1732 1574 32164;32165;32166;32167;32168;32169;32170;32171;32172;32173;32174;32175;32176;32177;32178;32179;32180;32181;32182;32183;32184;32185;32186;32187;32188;32189;32190;32191;32192;32193;32194;32195;32196 20001;20002;20003;20004;20005;20006;20007;20008;20009;20010;20011 20001 11 AMSDDEPKQDKTSQDADFTAK Unmodified 2327.0223 0.022334524 1732 P69428 tatA Sec-independent protein translocase protein TatA yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 13.384 13.835 3;4 0.0027906 3378 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 57.989 57.65 89859000 0 0 0 7290000 6686000 6946200 0 0 0 14000000 8412500 10893000 0 0 0 2371400 0 2399500 0 0 0 13582000 9589800 7688400 1632 1732 1575 32197;32198;32199;32200;32201;32202;32203;32204;32205;32206;32207;32208;32209;32210;32211;32212;32213;32214;32215;32216 20012;20013;20014;20015;20016;20017;20018;20019;20020 20019 9 AMSDLQTPEWVGADCAR Unmodified 1905.8349 0.83493187 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.625 36.849 2 4.5563E-24 18083 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 204.85 204.85 395650000 36123000 29038000 31025000 548180 0 0 33389000 29246000 30762000 0 840690 1144400 30686000 26953000 27658000 0 0 0 39907000 42108000 36226000 0 0 0 1633 948 1576 32217;32218;32219;32220;32221;32222;32223;32224;32225;32226;32227;32228;32229;32230;32231 20021;20022;20023;20024;20025;20026;20027;20028;20029;20030;20031;20032 20023 12 AMSEPGVIVALHQLK Unmodified 1591.8756 0.87559811 1126 P16686 phnH Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 36.704 34.867 2;3 0.017778 16721 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.743 43.477 220090000 0 0 0 0 0 0 11251000 7722100 8685800 2298400 2186000 1219500 15967000 17886000 16343000 0 0 0 36472000 43980000 48794000 2273000 2778600 2232700 1634 1126 1577 32232;32233;32234;32235;32236;32237;32238;32239;32240;32241;32242;32243;32244;32245;32246;32247;32248;32249 20033;20034 20033 0 AMSQNLR Unmodified 818.40687 0.40687146 492 P0A962 ansA L-asparaginase 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 12.286 12.753 2 0.16286 3042 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 54.525 44.219 32646000 7849900 0 0 0 0 0 2363800 0 0 0 0 0 0 0 17743000 0 2233300 2456600 0 0 0 0 0 0 1635 492 1578 32250;32251;32252;32253;32254 20035 20035 0 AMTDVTGFGLLGHLSEMCQGAGVQAR Unmodified 2705.2724 0.27237517 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 2 1 2 1 2 2 2 1 51.111 49.877 2;3 1.2462E-72 24584 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 358.85 348 2123400000 185770000 134700000 132360000 0 0 0 199620000 210300000 202050000 0 20811000 18886000 169880000 166300000 157120000 0 13404000 0 170950000 174910000 157910000 8392900 0 0 1636 1119 1579 32255;32256;32257;32258;32259;32260;32261;32262;32263;32264;32265;32266;32267;32268;32269;32270;32271;32272;32273;32274;32275;32276;32277;32278;32279;32280;32281 20036;20037;20038;20039;20040;20041;20042;20043;20044;20045;20046;20047;20048;20049;20050;20051;20052;20053 20041 17 AMTPANYIGR Unmodified 1092.5386 0.53861391 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.256 23.359 2 0.00018402 9893 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 122.74 107.96 1210300000 139610000 128700000 122500000 0 0 0 62306000 57134000 55852000 0 0 0 100370000 91766000 88676000 0 0 0 112480000 128180000 122740000 0 0 0 1637 638 1580 32282;32283;32284;32285;32286;32287;32288;32289;32290;32291;32292;32293 20054;20055;20056;20057;20058;20059;20060;20061;20062 20060 9 AMTPGCTVQACGLR Oxidation (M) 1536.6847 0.68470258 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 18.809 19.402 2 0.00070539 7635 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 71.03 62.806 51438000 7160100 4460200 4619900 0 0 0 6217200 0 3556500 0 0 0 3859300 3120600 1758100 0 0 0 7112500 5441200 4132000 0 0 0 1638 834 1581 32294;32295;32296;32297;32298;32299;32300;32301;32302;32303;32304;32305 20063;20064;20065;20066;20067;20068;20069 20063 392 5 AMTPGCTVQACGLR Unmodified 1520.6898 0.68978795 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 2 2 1 1 1 1 1 1 1 22.806 22.279 2;3 1.8201E-26 9798 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 234.71 225.05 3436700000 417170000 394010000 419150000 4198200 2391800 1985500 285190000 226530000 247930000 0 0 0 210890000 182850000 189060000 0 0 0 289300000 283210000 282880000 0 0 0 1639 834 1581 32306;32307;32308;32309;32310;32311;32312;32313;32314;32315;32316;32317;32318;32319;32320;32321;32322;32323;32324 20070;20071;20072;20073;20074;20075;20076;20077;20078;20079;20080;20081;20082 20070 12 AMTPVAWWMLHEETVYK Oxidation (M) 2106.9907 0.99070423 885 P0AET2 hdeB Acid stress chaperone HdeB yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 3 3 3 3 1 1 1 45.484 43.921 3 4.9781E-05 21919 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.317 77.877 595620000 136480000 54806000 98909000 0 0 0 114690000 64498000 105180000 0 0 0 8050400 0 6201200 0 0 0 0 6812200 0 0 0 0 1640 885 1582 32325;32326;32327;32328;32329;32330;32331;32332;32333;32334;32335;32336;32337;32338;32339;32340;32341;32342;32343;32344 20083;20084;20085;20086;20087;20088;20089;20090;20091;20092;20093;20094 20084 403;404 12 AMTPVAWWMLHEETVYK Unmodified 2090.9958 0.99578961 885 P0AET2 hdeB Acid stress chaperone HdeB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 1 1 1 3 3 4 1 1 3 2 3 2 3 2 50.775 49.389 2;3 5.732E-19 23573 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 236.57 231.39 21482000000 4090700000 3772700000 3751000000 2199600 2588800 2138500 2615400000 2506500000 2423600000 5973000 3496300 0 488470000 456010000 511620000 0 0 0 272070000 290390000 286680000 0 0 0 1641 885 1582 32345;32346;32347;32348;32349;32350;32351;32352;32353;32354;32355;32356;32357;32358;32359;32360;32361;32362;32363;32364;32365;32366;32367;32368;32369;32370;32371;32372;32373;32374;32375;32376;32377;32378;32379;32380;32381;32382;32383;32384;32385;32386;32387 20095;20096;20097;20098;20099;20100;20101;20102;20103;20104;20105;20106;20107;20108;20109;20110;20111;20112;20113;20114;20115;20116;20117;20118;20119;20120;20121;20122;20123;20124;20125;20126;20127;20128;20129;20130;20131;20132;20133;20134;20135;20136;20137;20138;20139 20125 44 AMTQHLQEISESVR Unmodified 1627.7988 0.79880436 736 P0ACM2 rspR HTH-type transcriptional repressor RspR yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.694 22.165 3 0.00013652 8908 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 79.885 79.011 127680000 16674000 13205000 12043000 0 0 0 10544000 10495000 9568700 0 0 0 8550200 7251800 8343900 0 0 0 10248000 10411000 10350000 0 0 0 1642 736 1583 32388;32389;32390;32391;32392;32393;32394;32395;32396;32397;32398;32399 20140;20141;20142;20143;20144;20145;20146;20147 20147 8 AMTYHLDVVSAEQQMFSGLVEK Unmodified 2482.1872 0.18723178 236 P0A6E6 atpC ATP synthase epsilon chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 51.73 50.506 2;3 7.0944E-89 23656 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 334.25 326.47 2383300000 41972000 52348000 47128000 24838000 21083000 17194000 174900000 152340000 137680000 78207000 74294000 80316000 229800000 255330000 183200000 25561000 22347000 27608000 193710000 191370000 184030000 60085000 51222000 56708000 1643 236 1584 32400;32401;32402;32403;32404;32405;32406;32407;32408;32409;32410;32411;32412;32413;32414;32415;32416;32417;32418;32419;32420;32421;32422;32423;32424;32425;32426;32427;32428;32429;32430;32431;32432;32433;32434;32435;32436;32437;32438;32439;32440;32441 20148;20149;20150;20151;20152;20153;20154;20155;20156;20157;20158;20159;20160;20161;20162;20163;20164;20165;20166;20167;20168;20169;20170;20171;20172;20173 20172 26 AMVAGTLANFQHPTLK Unmodified 1697.8923 0.89231081 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 1 2 32.666 31.103 2;3 1.1485E-30 14024 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 282.05 279.54 2889200000 254470000 250750000 249670000 12416000 10973000 9999900 247960000 225260000 232340000 14346000 3420900 18630000 216740000 224210000 233810000 0 0 0 205700000 225820000 233770000 6946500 5635500 6300500 1644 902 1585 32442;32443;32444;32445;32446;32447;32448;32449;32450;32451;32452;32453;32454;32455;32456;32457;32458;32459;32460;32461;32462;32463;32464;32465;32466;32467;32468;32469;32470;32471;32472;32473;32474;32475;32476;32477;32478;32479;32480 20174;20175;20176;20177;20178;20179;20180;20181;20182;20183;20184;20185;20186;20187;20188;20189;20190;20191;20192;20193;20194;20195;20196;20197;20198;20199 20197 26 AMVEMQTTAALAESR Unmodified 1607.7647 0.76472704 168 P07654 pstA Phosphate transport system permease protein PstA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.905 30.231 2 2.1341E-11 14282 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 164.04 153.67 55567000 0 0 0 0 0 0 0 0 0 4202100 3271000 0 0 5692900 5601200 0 0 0 8182500 10022000 7930800 3103600 3558200 4002900 1645 168 1586 32481;32482;32483;32484;32485;32486;32487;32488;32489;32490 20200;20201 20201 2 AMVEVFLER Unmodified 1092.5638 0.56376603 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.734 37.87 2 1.0639E-07 18377 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 182.39 181.68 5422800000 986390000 906360000 885800000 4721300 4885900 4635900 371560000 314130000 304540000 1417500 1208200 1252600 256440000 233090000 217820000 0 0 0 308220000 321060000 294990000 1590800 1573400 1095100 1646 391 1587 32491;32492;32493;32494;32495;32496;32497;32498;32499;32500;32501;32502;32503;32504;32505;32506;32507;32508;32509;32510;32511 20202;20203;20204;20205;20206;20207;20208;20209;20210;20211;20212;20213;20214;20215;20216;20217;20218;20219;20220;20221;20222;20223;20224;20225;20226;20227;20228;20229;20230;20231;20232 20207 31 AMVEVFLER Oxidation (M) 1108.5587 0.55868065 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 2 1 1 2 2 1 2 1 2 33.245 31.79 2 0.0091125 15508 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.383 61.162 121560000 15899000 0 23208000 0 0 0 14505000 8137500 9542700 0 0 0 10034000 7135800 3262300 0 0 0 9978900 6190500 13665000 0 0 0 1647 391 1587 32512;32513;32514;32515;32516;32517;32518;32519;32520;32521;32522;32523;32524;32525;32526;32527;32528;32529 20233;20234;20235;20236;20237;20238;20239;20240 20237 174 3 AMVQHVIDAANELGAAHVHLVYGHGGDLLK Unmodified 3134.6084 0.60837182 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 41.157 39.492 4;5;6 2.4269E-11 19095 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 116.34 115.66 2195300000 192310000 162750000 131430000 0 0 0 180660000 161530000 172940000 0 0 0 143040000 181840000 160930000 0 0 0 219930000 226630000 261320000 0 0 0 1648 720 1588 32530;32531;32532;32533;32534;32535;32536;32537;32538;32539;32540;32541;32542;32543;32544;32545;32546;32547;32548;32549;32550;32551;32552;32553;32554;32555;32556;32557;32558;32559;32560;32561;32562;32563;32564;32565 20241;20242;20243;20244;20245;20246;20247;20248;20249;20250;20251;20252;20253;20254;20255;20256;20257;20258;20259;20260;20261;20262;20263;20264;20265;20266;20267;20268;20269 20255 29 AMVSNTATVLR Unmodified 1161.6176 0.61759251 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 21.807 21.728 2 1.8599E-10 6404 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 193.41 183.18 759670000 0 0 0 0 0 753730 10694000 8413200 12387000 0 0 0 198250000 175670000 175510000 12729000 11054000 9534300 49121000 43269000 39479000 4731000 3036100 5023600 1649 647 1589 32566;32567;32568;32569;32570;32571;32572;32573;32574;32575;32576;32577;32578;32579;32580;32581;32582 20270;20271;20272;20273;20274;20275;20276;20277;20278;20279 20272 9 AMVVDQFR Unmodified 964.48004 0.4800364 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.856 24.829 2 3.0024E-06 8219 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 181.68 176.2 4232200000 169010000 151630000 151820000 0 0 1777000 90503000 79448000 80296000 857010 0 180850000 131430000 121660000 112870000 616560000 530180000 591030000 126330000 140770000 110340000 430200000 414610000 0 1650 935 1590 32583;32584;32585;32586;32587;32588;32589;32590;32591;32592;32593;32594;32595;32596;32597;32598;32599;32600;32601;32602 20280;20281;20282;20283;20284;20285;20286;20287;20288;20289;20290;20291 20280 11 AMVVDQFR Oxidation (M) 980.47495 0.47495102 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 3 2 3 3 3 2 21.964 21.578 2 0.0010144 7896 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 122.79 115.97 142870000 27718000 0 0 0 0 0 0 0 0 9840500 7900800 4263200 0 0 0 14299000 10430000 12403000 0 0 0 21023000 19561000 15433000 1651 935 1590 32603;32604;32605;32606;32607;32608;32609;32610;32611;32612;32613;32614;32615;32616;32617;32618;32619;32620;32621;32622;32623;32624 20292;20293;20294;20295;20296;20297;20298;20299;20300;20301;20302 20295 418 11 AMVVDQFREHEGEIITGVVK Oxidation (M) 2272.1522 0.15216691 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 1 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 5 2 4 5 4 4 2 2 2 35.059 33.741 3;4 3.6792E-05 12562 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 82.609 82.081 237010000 0 0 0 0 0 0 0 0 0 37677000 12864000 23014000 0 0 0 36343000 20752000 32634000 0 0 0 25526000 27911000 20292000 1652 935 1591 32625;32626;32627;32628;32629;32630;32631;32632;32633;32634;32635;32636;32637;32638;32639;32640;32641;32642;32643;32644;32645;32646;32647;32648;32649;32650;32651;32652;32653;32654 20303;20304;20305;20306;20307;20308;20309;20310;20311;20312;20313;20314;20315;20316 20312 418 14 AMVVDQFREHEGEIITGVVK Unmodified 2256.1573 0.15725228 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 4 3 3 3 3 3 3 3 37.394 35.816 2;3;4 1.4825E-29 13886 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 246.18 234.03 7231700000 0 0 0 2884600 4845400 4074500 0 0 0 467960000 449480000 450560000 0 0 0 900590000 793010000 807270000 0 0 0 1150700000 1098200000 1102100000 1653 935 1591 32655;32656;32657;32658;32659;32660;32661;32662;32663;32664;32665;32666;32667;32668;32669;32670;32671;32672;32673;32674;32675;32676;32677;32678;32679;32680;32681;32682;32683;32684;32685;32686;32687;32688;32689 20317;20318;20319;20320;20321;20322;20323;20324;20325;20326;20327;20328;20329;20330;20331;20332;20333;20334;20335;20336;20337;20338;20339;20340;20341;20342;20343 20340 27 AMVVDQFREHEGEIITGVVKK Unmodified 2384.2522 0.2522153 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 32.931 31.494 3;4;5 4.9584E-15 10920 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 137.05 133.46 1282400000 0 0 0 0 0 0 0 0 0 66555000 53628000 76153000 0 0 0 222040000 163280000 190250000 0 0 0 156350000 176090000 178050000 1654 935 1592 32690;32691;32692;32693;32694;32695;32696;32697;32698;32699;32700;32701;32702;32703;32704;32705;32706;32707;32708;32709;32710;32711;32712;32713;32714;32715;32716 20344;20345;20346;20347;20348;20349;20350;20351;20352;20353;20354;20355;20356;20357;20358;20359;20360;20361;20362;20363 20346 20 AMYPYIER Unmodified 1041.4954 0.49535211 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.027 25.88 2 0.0031357 11718 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.662 77.423 173950000 20036000 20429000 19001000 0 0 0 8992900 7920200 11490000 0 0 0 12170000 13045000 13216000 0 0 0 15509000 13781000 18360000 0 0 0 1655 1399 1593 32717;32718;32719;32720;32721;32722;32723;32724;32725;32726;32727;32728 20364;20365;20366;20367 20364 4 AMYQNMLVVIDPNQDDQPALR Unmodified 2430.1672 0.16716504 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 51.552 50.286 2 6.5654E-43 24795 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 299.04 286.75 111530000 14494000 11845000 0 0 0 0 14556000 15688000 17396000 0 0 0 0 8407400 9445700 0 0 0 6430500 6934400 6331500 0 0 0 1656 585 1594 32729;32730;32731;32732;32733;32734;32735;32736;32737;32738 20368 20368 1 AMYQNMLVVIDPNQDDQPALRR Unmodified 2586.2683 0.26827607 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 45.507 43.19 3 0.019001 17212 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 41.711 39.025 14221000 0 0 0 0 0 0 0 0 0 5048900 4623400 4549200 0 0 0 0 0 0 0 0 0 0 0 0 1657 585 1595 32739;32740;32741 20369 20369 1 AMYSIAK Unmodified 782.39966 0.39966081 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.558 17.341 2 0.011149 6115 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.086 41.113 10356000000 1787000000 1530600000 1395800000 5301500 4651000 7390900 1016200000 987160000 932060000 0 0 0 473490000 437280000 395400000 0 0 0 459720000 453900000 470450000 0 0 0 1658 397 1596 32742;32743;32744;32745;32746;32747;32748;32749;32750;32751;32752;32753;32754;32755;32756 20370;20371;20372;20373;20374;20375;20376;20377;20378;20379;20380;20381;20382;20383;20384;20385;20386 20375 17 AMYSIAK Oxidation (M) 798.39458 0.39457544 397 P0A853 tnaA Tryptophanase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.873 13.714 2 0.035271 4174 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.383 34.491 506080000 88081000 88291000 82298000 0 0 0 55813000 54850000 50872000 0 0 0 13461000 11326000 11521000 0 0 0 15271000 18021000 16278000 0 0 0 1659 397 1596 32757;32758;32759;32760;32761;32762;32763;32764;32765;32766;32767;32768 20387;20388;20389 20387 183 3 AMYSQFENTFMMYLPR Unmodified 2027.8944 0.894361 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 54.897 53.411 2 1.4785E-30 21442 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 276.99 267.7 115500000 0 0 0 0 0 0 7963500 8030700 6381300 0 0 0 0 0 7868200 0 0 0 10316000 10663000 9844300 16968000 17181000 20282000 1660 1067 1597 32769;32770;32771;32772;32773;32774;32775;32776;32777;32778 20390;20391;20392 20392 3 ANADLDKQPDSVSSVLK Unmodified 1785.9109 0.91085723 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 24.295 23.393 2;3 6.1047E-24 10369 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 209.56 195.4 784360000 64430000 67126000 56918000 644720 711310 874830 66048000 68380000 56294000 2528500 1559300 2334200 56140000 44887000 47211000 3917400 3424600 3693100 77933000 87032000 66987000 1504300 1739100 2042700 1661 1845 1598 32779;32780;32781;32782;32783;32784;32785;32786;32787;32788;32789;32790;32791;32792;32793;32794;32795;32796;32797;32798;32799;32800;32801;32802;32803;32804;32805;32806;32807;32808;32809;32810;32811;32812;32813;32814 20393;20394;20395;20396;20397;20398;20399;20400;20401;20402;20403;20404;20405;20406;20407 20395 15 ANADLDKQPDSVSSVLK Acetyl (Protein N-term) 1827.9214 0.92142191 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 1 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 33.812 32.348 2 5.0082E-24 15370 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 234.9 228.2 74301000 19971000 15354000 14172000 0 0 0 5156100 5373300 4267400 0 0 0 3043300 3051100 0 0 0 0 0 3912800 0 0 0 0 1662 1845 1598 32815;32816;32817;32818;32819;32820;32821;32822;32823 20408;20409 20408 2 ANALLADGLK Unmodified 984.5604 0.56039521 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.16 25.83 2 0.00010186 11658 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.31 67.431 2078000000 155330000 157680000 139200000 0 672890 0 206250000 194580000 188300000 1722800 1175300 1682700 161240000 159090000 153850000 0 0 0 186630000 191110000 179510000 0 0 0 1663 1450 1599 32824;32825;32826;32827;32828;32829;32830;32831;32832;32833;32834;32835;32836;32837;32838;32839 20410;20411;20412;20413;20414;20415;20416;20417;20418;20419;20420;20421 20415 12 ANATAWLK Unmodified 873.47085 0.47085192 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 1 1 1 2 2 2 1 1 1 1 1 2 2 2 2 2 2 23.278 22.513 1;2 5.4241E-05 9684 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 151.04 96.51 1283900000 24035000 14027000 152530000 2100600 2641300 0 15685000 16113000 16156000 127760000 125680000 69971000 12885000 10380000 11078000 8495800 0 8114200 176240000 202050000 158070000 41563000 43120000 45205000 1664 343 1600 32840;32841;32842;32843;32844;32845;32846;32847;32848;32849;32850;32851;32852;32853;32854;32855;32856;32857;32858;32859;32860;32861;32862;32863;32864;32865;32866;32867;32868;32869;32870;32871;32872 20422;20423;20424;20425;20426;20427;20428 20424 4 ANATAWLKDNPETAK Unmodified 1628.8158 0.81583463 343 P0A7G6 recA Protein RecA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.405 21.859 2;3 6.0904E-27 7285 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 256.31 249.42 673360000 0 0 0 18441000 15997000 17030000 0 0 0 122130000 125590000 175060000 0 0 0 26412000 23443000 19264000 0 0 0 48127000 43428000 38445000 1665 343 1601 32873;32874;32875;32876;32877;32878;32879;32880;32881;32882;32883;32884;32885;32886;32887;32888;32889;32890;32891;32892;32893;32894;32895;32896 20429;20430;20431;20432;20433;20434;20435;20436;20437;20438;20439;20440;20441;20442;20443;20444;20445;20446;20447 20440 19 ANATAWLKDNPETAKEIEK Unmodified 2128.08 0.08004782 343 P0A7G6 recA Protein RecA yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 24.336 23.272 3;4 5.921E-10 8239 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 106.49 103.48 149710000 0 0 0 5431200 5101900 4979400 0 0 0 27990000 30068000 27049000 0 0 0 4639500 0 4827500 0 0 0 12393000 14595000 12636000 1666 343 1602 32897;32898;32899;32900;32901;32902;32903;32904;32905;32906;32907;32908;32909;32910;32911;32912;32913;32914;32915;32916 20448;20449;20450;20451;20452;20453;20454;20455;20456;20457 20453 10 ANAVLLHSCEVTSGTPGCYR Unmodified 2191.015 0.015021497 1730 P69411 rcsF Outer membrane lipoprotein RcsF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.761 23.785 3 3.5494E-10 8546 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 116.29 115.86 190140000 12940000 11216000 10413000 3328100 2829600 3559300 6925000 11801000 9014600 6199900 6802800 5324100 11051000 8284300 10529000 1759400 910900 797610 18795000 16540000 17982000 4994600 4307800 3835600 1667 1730 1603 32917;32918;32919;32920;32921;32922;32923;32924;32925;32926;32927;32928;32929;32930;32931;32932;32933;32934;32935;32936;32937;32938;32939;32940 20458;20459;20460;20461;20462;20463;20464;20465;20466;20467;20468;20469 20460 12 ANAVVMATGGAGR Unmodified 1173.5924 0.5924404 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.758 17.758 2 1.057E-18 6676 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 180.67 162.69 187410000 0 0 0 0 0 0 0 0 0 56282000 46583000 40621000 0 0 0 6265100 5264000 5531100 0 0 0 8775900 9111400 8977000 1668 25 1604 32941;32942;32943;32944;32945;32946;32947;32948;32949;32950;32951;32952 20470;20471;20472;20473;20474;20475;20476;20477;20478 20473 9 ANAYGHGIER Unmodified 1086.5207 0.52065566 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 11.245 12.017 3 0.13861 3122 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 24.696 18.915 244720000 62302000 80106000 4933600 0 0 0 18294000 0 0 0 0 0 0 0 0 0 0 0 32799000 26663000 19621000 0 0 0 1669 1326 1605 32953;32954;32955;32956;32957;32958;32959 20479;20480 20480 2 ANAYGHGLLETAR Unmodified 1371.6895 0.6895119 227 P0A6B4 alr Alanine racemase, biosynthetic yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 2 1 2 2 2 2 17.742 18.422 2;3 0.001251 6840 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 68.515 59.193 126090000 5874100 13021000 4140900 0 0 0 10331000 14235000 6944300 0 0 0 10423000 5639500 9939200 0 0 0 17705000 14055000 13784000 0 0 0 1670 227 1606 32960;32961;32962;32963;32964;32965;32966;32967;32968;32969;32970;32971;32972;32973;32974;32975;32976;32977;32978 20481;20482;20483;20484 20481 2 ANCSDSQLR Unmodified 1049.456 0.45600649 1556 P42616 yqjC Protein YqjC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 10.677 11.513 2 4.5369E-19 2616 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 214.11 197.97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1671 1556 1607 32979;32980;32981;32982;32983;32984;32985;32986;32987 20485;20486;20487;20488;20489;20490;20491;20492;20493 20491 9 ANDAAGDGTTTATVLAQAIITEGLK Unmodified 2401.2336 0.23364793 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 54.94 53.491 2;3 3.2638E-50 25504 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 302.14 288.06 12765000000 749140000 1092200000 1052800000 65149000 62227000 63255000 950250000 872300000 942180000 63950000 59446000 63448000 973640000 925670000 1012000000 0 0 0 1240600000 1301200000 1115800000 52833000 48030000 58760000 1672 240 1608 32988;32989;32990;32991;32992;32993;32994;32995;32996;32997;32998;32999;33000;33001;33002;33003;33004;33005;33006;33007;33008;33009;33010;33011;33012;33013;33014;33015;33016;33017;33018;33019;33020;33021;33022;33023;33024;33025;33026;33027;33028 20494;20495;20496;20497;20498;20499;20500;20501;20502;20503;20504;20505;20506;20507;20508;20509;20510;20511;20512;20513;20514;20515;20516;20517;20518;20519;20520;20521;20522;20523 20519 30 ANDIALK Unmodified 743.41775 0.41775372 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 2 2 2 2 1 2 2 2 2 2 1 1 1 2 14.108 14.896 2 0.0019661 4638 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.65 73.982 5832800000 967130000 1098500000 718450000 6603300 8966700 10243000 454380000 449650000 452350000 0 0 0 357550000 314500000 300040000 0 0 0 311170000 309280000 68037000 1934100 2025100 2049400 1673 339 1609 33029;33030;33031;33032;33033;33034;33035;33036;33037;33038;33039;33040;33041;33042;33043;33044;33045;33046;33047;33048;33049;33050;33051;33052;33053;33054;33055;33056;33057;33058 20524;20525;20526;20527;20528;20529;20530;20531;20532;20533;20534;20535 20530 12 ANDIDVPAALIDSEIDVLR Unmodified 2038.0582 0.058249746 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 3 2 2 2 2 3 1 55.063 53.602 2;3 8.8907E-18 26377 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 167.93 156.88 8116600000 634520000 643470000 597930000 3754300 4133600 3899400 436400000 396640000 427410000 7291000 6094400 6157000 729170000 693000000 712400000 0 0 0 945600000 924960000 937230000 6601700 0 0 1674 396 1610 33059;33060;33061;33062;33063;33064;33065;33066;33067;33068;33069;33070;33071;33072;33073;33074;33075;33076;33077;33078;33079;33080;33081;33082;33083;33084;33085;33086;33087;33088;33089;33090;33091 20536;20537;20538;20539;20540;20541;20542;20543;20544;20545;20546;20547;20548;20549;20550;20551;20552;20553;20554;20555;20556;20557;20558;20559;20560 20543 25 ANDIDVPAALIDSEIDVLRR Unmodified 2194.1594 0.15936077 396 P0A850 tig Trigger factor yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.663 52.427 3 3.6174E-24 21138 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 200.6 194.24 398820000 6328600 7114400 5195300 20075000 25850000 26252000 5782400 5448800 7077300 26280000 30439000 29207000 5563800 5850300 4495100 24914000 30094000 26414000 11553000 10535000 9487100 28165000 24991000 21707000 1675 396 1611 33092;33093;33094;33095;33096;33097;33098;33099;33100;33101;33102;33103;33104;33105;33106;33107;33108;33109;33110;33111;33112;33113;33114;33115 20561;20562;20563;20564;20565;20566;20567;20568;20569;20570 20563 9 ANDIVVALLQEK Unmodified 1311.7398 0.73981614 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 47.353 45.951 2;3 1.7371E-06 22752 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 165.11 146.33 2348100000 266110000 232280000 219790000 1211000 0 1333200 167670000 179800000 164330000 0 0 0 137350000 159430000 150680000 0 0 0 211150000 233230000 223110000 0 0 621690 1676 58 1612 33116;33117;33118;33119;33120;33121;33122;33123;33124;33125;33126;33127;33128;33129;33130;33131;33132;33133;33134;33135;33136;33137;33138;33139;33140;33141;33142 20571;20572;20573;20574;20575;20576;20577;20578;20579;20580;20581;20582;20583;20584;20585;20586;20587;20588;20589;20590;20591;20592;20593;20594 20573 24 ANDTDYGLAAGIVTADLNR Unmodified 1948.949 0.94903365 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 47.593 46.254 2 1.3838E-36 22720 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 294.26 274.41 126040000 48421000 43608000 34013000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1677 1141 1613 33143;33144;33145 20595;20596;20597 20595 3 ANDVLKK Unmodified 786.45995 0.45995289 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 9.9411 10.767 2 0.022586 2427 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.146 44.04 194640000 56347000 60261000 58278000 0 0 0 0 0 0 0 0 0 2789000 3247700 0 0 0 0 3839900 4174300 5701700 0 0 0 1678 334 1614 33146;33147;33148;33149;33150;33151;33152;33153 20598;20599;20600;20601 20599 4 ANEAYLQGQLGNPK Unmodified 1501.7525 0.75250609 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 2 1 1 2 4 3 1 1 1 3 3 4 1 1 1 3 2 2 1 1 1 24.225 23.29 2;3 3.5663E-35 10066 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 262.23 259.96 17775000000 1541400000 1253700000 1189300000 3082500 2642800 2520900 1889600000 1960900000 1904900000 2420900 2537600 2633500 1252700000 1224700000 1175300000 1342200 1621900 1397500 1330200000 1475100000 1550000000 3318500 2164700 1777900 1679 634 1615 33154;33155;33156;33157;33158;33159;33160;33161;33162;33163;33164;33165;33166;33167;33168;33169;33170;33171;33172;33173;33174;33175;33176;33177;33178;33179;33180;33181;33182;33183;33184;33185;33186;33187;33188;33189;33190;33191;33192;33193;33194;33195;33196;33197;33198;33199 20602;20603;20604;20605;20606;20607;20608;20609;20610;20611;20612;20613;20614;20615;20616;20617;20618;20619;20620;20621;20622;20623;20624;20625;20626;20627;20628;20629;20630;20631;20632;20633;20634;20635;20636;20637;20638;20639;20640;20641;20642;20643;20644;20645;20646;20647;20648;20649;20650;20651;20652;20653;20654;20655 20621 47 ANELMEEFHIEHLR Unmodified 1766.841 0.84100352 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 34.558 32.863 3;4 1.9542E-06 15631 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 90.759 86.855 607250000 37329000 37027000 33756000 7805600 8787700 10368000 49754000 50937000 43692000 28515000 25061000 20778000 33724000 29008000 31285000 0 0 0 25631000 48113000 48392000 11888000 13966000 11431000 1680 559 1616 33200;33201;33202;33203;33204;33205;33206;33207;33208;33209;33210;33211;33212;33213;33214;33215;33216;33217;33218;33219;33220;33221;33222;33223;33224;33225;33226;33227;33228;33229;33230;33231;33232;33233;33234;33235;33236;33237;33238;33239;33240 20656;20657;20658;20659;20660;20661;20662;20663;20664;20665;20666;20667;20668;20669;20670;20671;20672;20673;20674;20675;20676;20677;20678;20679 20667 23 ANELTWHDVLAEEK Unmodified 1653.7999 0.79985021 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.484 33.036 2 3.9179E-15 15667 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 200.21 187.94 136670000 13141000 13681000 11037000 0 0 0 11511000 13516000 10208000 0 0 0 9000900 7448600 8437900 0 0 0 12368000 13871000 12453000 0 0 0 1681 1078 1617 33241;33242;33243;33244;33245;33246;33247;33248;33249;33250;33251;33252 20680;20681;20682;20683;20684;20685 20682 6 ANENGESFVAMVDR Unmodified 1537.6831 0.6831059 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 34.826 33.304 2 1.6458E-19 15844 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 208.72 208.72 205790000 26491000 24106000 26931000 0 0 0 0 0 0 754760 0 0 0 25916000 0 0 0 0 34629000 37296000 29672000 0 0 0 1682 1188 1618 33253;33254;33255;33256;33257;33258;33259;33260 20686;20687;20688;20689;20690 20686 5 ANEVNLLLQK Unmodified 1140.6503 0.65027285 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 31.739 30.387 2 0.00015316 13738 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 125.58 98.098 251060000 18695000 14849000 14837000 356610 0 0 23206000 22757000 20894000 0 0 0 19808000 17522000 19393000 0 0 0 26153000 26347000 26245000 0 0 0 1683 505 1619 33261;33262;33263;33264;33265;33266;33267;33268;33269;33270;33271;33272;33273 20691;20692;20693;20694;20695;20696;20697;20698;20699;20700;20701 20699 11 ANEVRPVLACR Unmodified 1283.6768 0.67683873 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 14.44 15.204 2;3 2.073E-07 4935 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 183.72 151.79 896480000 71633000 79502000 75971000 1633100 1808900 1265500 71378000 80695000 70795000 0 0 0 59056000 50762000 52315000 0 0 0 96031000 91162000 89819000 1285000 1364400 0 1684 1348 1620 33274;33275;33276;33277;33278;33279;33280;33281;33282;33283;33284;33285;33286;33287;33288;33289;33290;33291;33292;33293;33294;33295;33296;33297;33298;33299;33300;33301;33302;33303;33304 20702;20703;20704;20705;20706;20707;20708;20709;20710;20711;20712;20713;20714;20715;20716;20717;20718;20719;20720;20721;20722;20723 20711 22 ANGAEIDDGAINGIK Unmodified 1456.7158 0.71578623 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.052 24.944 2 6.1078E-27 11268 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 231.42 216.75 314070000 3811100 0 4796700 4445200 5373400 4094700 18721000 21913000 18894000 37519000 43710000 33763000 10551000 11417000 9796700 5322600 2766100 2675900 13087000 14149000 12205000 12620000 11581000 10854000 1685 1747 1621 33305;33306;33307;33308;33309;33310;33311;33312;33313;33314;33315;33316;33317;33318;33319;33320;33321;33322;33323;33324;33325;33326;33327 20724;20725;20726;20727;20728;20729;20730;20731;20732;20733;20734;20735;20736;20737 20731 13 ANGGVAEMDK Unmodified 990.44404 0.44404482 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.942 12.679 2 0.013371 3523 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 63.397 53.486 173210000 29486000 29177000 0 2083900 1817300 1482000 14480000 14989000 15279000 2777700 1582100 2003600 9551800 7619700 7958400 0 0 0 12319000 9100900 10395000 0 0 1111600 1686 1211 1622 33328;33329;33330;33331;33332;33333;33334;33335;33336;33337;33338;33339;33340;33341;33342;33343;33344;33345 20738;20739;20740;20741 20741 2 ANGLSEAMLDR Unmodified 1175.5605 0.56047157 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.833 25.686 2 1.6652E-05 11462 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 139.98 128.76 185080000 22752000 21452000 17488000 0 0 0 17001000 15294000 12956000 0 0 0 11103000 12810000 12213000 0 0 0 14757000 12084000 15166000 0 0 0 1687 148 1623 33346;33347;33348;33349;33350;33351;33352;33353;33354;33355;33356;33357 20742;20743;20744;20745;20746;20747;20748;20749;20750;20751 20748 10 ANGLVDSLGDFDDAVAK Unmodified 1705.8159 0.81589421 188 P08395 sppA Protease 4 yes yes 0 0 0 By MS/MS 1 46.595 44.497 2 0.0057307 17797 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 61.11 55.504 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1688 188 1624 33358 20752 20752 1 ANGQVFAQTVAADGSPGYWSVLIVNK Unmodified 2691.3657 0.36566515 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 53.616 52.409 3 0.14599 25560 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 21.135 14.701 50922000 3119900 0 0 0 0 0 0 0 0 0 0 0 5504100 5407100 4116100 1730800 0 0 7376200 13275000 10394000 0 0 0 1689 1124 1625 33359;33360;33361;33362;33363;33364;33365;33366 20753 20753 1 ANHVGDWGTQFGMLIAWLEK Unmodified 2272.1099 0.10990816 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.503 54.029 3 2.184E-10 26636 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.43 123.17 512020000 26787000 22887000 26158000 0 0 0 50024000 36365000 41614000 0 0 0 53423000 47464000 40561000 0 0 0 60172000 49339000 57222000 0 0 0 1690 1073 1626 33367;33368;33369;33370;33371;33372;33373;33374;33375;33376;33377;33378 20754;20755;20756;20757;20758;20759;20760;20761;20762 20756 9 ANIDEFTETTSR Unmodified 1382.6314 0.6313879 1918 P77580 mhpF Acetaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 25.001 24.03 2 0.0010039 10837 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 77.379 72.928 28906000 0 0 0 0 0 0 0 0 6608700 0 0 0 4867600 0 0 0 0 0 4172500 7426100 5830900 0 0 0 1691 1918 1627 33379;33380;33381;33382;33383 20763 20763 1 ANIETESR Unmodified 918.44067 0.44067401 1607 P52129 rnlA mRNA endoribonuclease LS yes yes 0 0 0 By MS/MS 1 11.325 11.429 2 0.015756 2382 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 73.248 57.809 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1692 1607 1628 33384 20764 20764 1 ANINIVAIAQGSSER Unmodified 1541.8162 0.81616898 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 36.673 35.177 2 8.5256E-18 16986 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.33 159.67 251150000 66602000 64080000 60998000 0 0 0 0 0 0 0 0 0 18556000 21851000 16429000 0 0 0 2629700 0 0 0 0 0 1693 34 1629 33385;33386;33387;33388;33389;33390;33391;33392;33393 20765;20766;20767;20768;20769;20770 20765 5 ANISVHEPR Unmodified 1021.5305 0.53049207 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.082 12.752 2 0.0010062 3477 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 95.608 89.437 655180000 19720000 19881000 18346000 8982400 7865100 11416000 48423000 54812000 54581000 17721000 14210000 14338000 47120000 42052000 41692000 0 930150 0 58266000 68595000 66881000 11525000 15499000 12323000 1694 1427 1630 33394;33395;33396;33397;33398;33399;33400;33401;33402;33403;33404;33405;33406;33407;33408;33409;33410;33411;33412;33413;33414;33415 20771;20772;20773;20774;20775;20776;20777;20778;20779;20780 20772 9 ANITVNK Unmodified 758.42865 0.42865276 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 2 2 2 2 2 2 1 2 2 2 1 2 1 1 1 11.1 11.912 2 0.0011398 3091 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 135.5 90.051 7393500000 1349900000 1117900000 990950000 44731000 33199000 31273000 385290000 432120000 394530000 1380300 0 0 431940000 376520000 370750000 0 0 0 463550000 468620000 472950000 16103000 11758000 0 1695 391 1631 33416;33417;33418;33419;33420;33421;33422;33423;33424;33425;33426;33427;33428;33429;33430;33431;33432;33433;33434;33435;33436;33437;33438;33439;33440;33441;33442;33443;33444 20781;20782;20783;20784;20785;20786;20787;20788;20789;20790;20791;20792;20793 20782 13 ANIVQQEVAR Unmodified 1126.6095 0.60947067 1607 P52129 rnlA mRNA endoribonuclease LS yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.779 18.217 2 0.0028962 5560 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 76.221 71.315 113380000 8242600 0 0 965690 1030300 0 0 12339000 11959000 7019500 6315700 6357100 6474300 7664500 7276900 0 881890 0 8359000 12246000 9448900 2496700 1568000 2737500 1696 1607 1632 33445;33446;33447;33448;33449;33450;33451;33452;33453;33454;33455;33456;33457;33458;33459;33460;33461;33462 20794;20795;20796 20794 3 ANKPSAEELKK Unmodified 1213.6667 0.6666512 310 P0A746 msrB Peptide methionine sulfoxide reductase MsrB yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 1 10.32 11.095 2;3 9.4376E-05 2500 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.57 104.31 2474600000 333120000 297640000 324330000 0 0 0 127460000 125080000 119710000 0 0 0 211770000 156120000 180020000 0 0 0 200940000 208360000 181840000 4022700 4170000 0 1697 310 1633 33463;33464;33465;33466;33467;33468;33469;33470;33471;33472;33473;33474;33475;33476;33477;33478;33479;33480;33481;33482;33483;33484;33485;33486;33487;33488 20797;20798;20799;20800;20801 20797 5 ANLDLASVVPELDMYDR Unmodified 1919.9299 0.92987811 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.606 53.172 2 5.7518E-31 26399 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 229.97 208.58 377550000 41634000 39630000 41138000 0 0 0 54022000 48428000 0 0 0 0 32049000 25510000 27869000 0 0 0 24802000 21844000 20621000 0 0 0 1698 283 1634 33489;33490;33491;33492;33493;33494;33495;33496;33497;33498;33499 20802;20803 20802 2 ANLPGYLGNCHSSGTVILDQLGEEHMK Unmodified 2939.3906 0.39057605 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 38.959 37.351 3;4 1.0909E-22 17994 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 167.72 164.96 11274000000 890200000 860510000 821990000 4050800 0 3344300 1325500000 1220800000 1327700000 6673500 5201100 3473600 762880000 779650000 621460000 3465800 2176200 2846700 902170000 750200000 976800000 0 3127000 0 1699 256 1635 33500;33501;33502;33503;33504;33505;33506;33507;33508;33509;33510;33511;33512;33513;33514;33515;33516;33517;33518;33519;33520;33521;33522;33523;33524;33525;33526;33527;33528;33529;33530;33531;33532;33533 20804;20805;20806;20807;20808;20809;20810;20811;20812;20813;20814;20815;20816;20817;20818;20819;20820;20821;20822;20823;20824;20825;20826 20816 23 ANLPPLLSVPVGEK Unmodified 1432.829 0.8289655 971 P0AFX9 rseB Sigma-E factor regulatory protein RseB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.31 43.896 2 0.0002896 21298 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.245 73.951 294860000 30464000 30423000 27381000 0 0 0 19208000 18070000 14469000 0 0 0 21298000 17400000 17681000 0 0 0 30697000 35330000 32437000 0 0 0 1700 971 1636 33534;33535;33536;33537;33538;33539;33540;33541;33542;33543;33544;33545 20827;20828;20829 20828 3 ANLPVLAIQR Unmodified 1093.6608 0.66077796 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.27 33.751 2 4.9747E-05 16185 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 136.11 127.79 1261000000 137580000 110860000 89027000 4424800 4196500 4021100 94357000 88324000 82784000 7436100 6304900 6214400 81090000 81838000 73841000 4577900 2975000 3380100 119690000 123980000 120010000 5204600 4155200 4748300 1701 1144 1637 33546;33547;33548;33549;33550;33551;33552;33553;33554;33555;33556;33557;33558;33559;33560;33561;33562;33563;33564;33565;33566;33567;33568;33569 20830;20831;20832;20833;20834;20835;20836;20837;20838;20839;20840;20841;20842;20843;20844;20845;20846;20847;20848 20843 19 ANLTAQINK Unmodified 971.53999 0.53999412 372 P0A7U7 rpsT 30S ribosomal protein S20 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.969 15.509 2 8.9551E-05 5048 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.83 113.98 7182000000 1100200000 1173300000 1051600000 8933800 10768000 8738800 347000000 332710000 382840000 21472000 20124000 25011000 409510000 389010000 309240000 9512400 7047800 9366600 548790000 510660000 473150000 11239000 12065000 9684500 1702 372 1638 33570;33571;33572;33573;33574;33575;33576;33577;33578;33579;33580;33581;33582;33583;33584;33585;33586;33587;33588;33589;33590;33591;33592;33593 20849;20850;20851;20852;20853;20854;20855;20856;20857;20858;20859;20860;20861;20862;20863;20864;20865;20866;20867;20868 20859 20 ANLVPHF Unmodified 796.42317 0.42317345 415 P0A8A8 rimP Ribosome maturation factor RimP yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.467 31.008 2 0.029675 14835 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 67.377 65.868 902270000 75248000 1522300 66859000 2043900 1887400 1744900 84769000 80837000 79331000 5899100 5405000 6176400 69280000 78320000 68287000 0 3040400 3614700 86652000 90372000 81557000 3083000 2851800 3484200 1703 415 1639 33594;33595;33596;33597;33598;33599;33600;33601;33602;33603;33604;33605;33606;33607;33608;33609;33610;33611;33612;33613;33614;33615;33616 20869;20870;20871;20872;20873;20874;20875;20876;20877;20878;20879 20872 11 ANMFGTVADYFAQSNK Unmodified 1762.7985 0.79847001 1208 P23522 garL 5-keto-4-deoxy-D-glucarate aldolase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.556 49.154 2;3 4.7996E-14 24263 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 176.32 165.73 428960000 26696000 27611000 27468000 0 0 0 41194000 39595000 39629000 0 0 0 45707000 35679000 39614000 0 0 0 30236000 38739000 36787000 0 0 0 1704 1208 1640 33617;33618;33619;33620;33621;33622;33623;33624;33625;33626;33627;33628;33629;33630;33631;33632;33633;33634;33635;33636;33637;33638;33639;33640 20880;20881;20882;20883;20884;20885;20886;20887;20888;20889;20890;20891;20892;20893;20894 20882 14 ANMLAHMETQNK Unmodified 1386.6384 0.63840431 1938 P77754 spy Spheroplast protein Y yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 2 1 2 2 2 1 1 1 1 2 2 2 1 2 15.321 15.909 2;3 3.1495E-08 5275 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 163.84 163.36 233380000 17461000 20355000 15200000 2347600 1928400 2271600 17505000 29804000 13307000 4839800 4668300 4258000 7306500 9504700 10785000 0 0 0 12609000 27109000 24842000 2548800 2139900 2589500 1705 1938 1641 33641;33642;33643;33644;33645;33646;33647;33648;33649;33650;33651;33652;33653;33654;33655;33656;33657;33658;33659;33660;33661;33662;33663;33664;33665;33666;33667;33668;33669;33670;33671;33672 20895;20896;20897;20898;20899;20900;20901 20900 7 ANMQNCGALR Unmodified 1133.507 0.50699621 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 12.626 13.262 2 0.0003339 3864 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.86 105.51 27971000 0 0 0 0 0 0 4210600 3792300 0 0 3219000 2413100 0 0 0 0 0 0 4154400 4472000 5709500 0 0 0 1706 1116 1642 33673;33674;33675;33676;33677;33678;33679;33680 20902;20903 20902 2 ANMQSER Unmodified 834.3654 0.36540057 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5.022 5.9548 2 0.00061652 1116 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 149.4 139.21 224600000 0 0 0 3389000 0 0 0 19594000 25181000 0 0 0 28381000 23307000 24028000 0 0 0 35732000 31542000 33446000 0 0 0 1707 927 1643 33681;33682;33683;33684;33685;33686;33687;33688;33689 20904;20905;20906;20907;20908;20909 20907 6 ANNAINDMVR Unmodified 1116.5346 0.53459117 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.589 19.897 2 1.6026E-06 7291 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 163.15 146.19 178380000 12657000 10398000 9936900 608190 684700 1188000 14336000 13292000 16079000 2338200 1804800 1266100 12236000 13044000 9704500 0 0 0 16387000 19521000 18929000 1697300 2273400 0 1708 1617 1644 33690;33691;33692;33693;33694;33695;33696;33697;33698;33699;33700;33701;33702;33703;33704;33705;33706;33707;33708;33709 20910;20911;20912;20913;20914;20915;20916 20916 7 ANNNDVK Unmodified 773.36678 0.36678078 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 5.9172 6.7204 2 0.0092255 1091 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.029 68.182 106480000 32253000 37022000 35050000 0 0 0 0 0 0 0 0 0 0 0 2158200 0 0 0 0 0 0 0 0 0 1709 877 1645 33710;33711;33712;33713 20917;20918;20919 20917 3 ANNVGELEK Unmodified 972.48762 0.4876242 981 P0AG27 yibN Uncharacterized protein YibN yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.786 13.328 2 0.00034096 3156 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 114.28 99.345 176630000 15336000 15489000 17154000 13296000 12806000 12321000 0 0 0 23015000 20569000 0 0 0 0 0 0 4269200 0 0 0 14743000 16085000 11549000 1710 981 1646 33714;33715;33716;33717;33718;33719;33720;33721;33722;33723;33724;33725;33726;33727 20920;20921;20922;20923;20924;20925;20926;20927 20921 8 ANPAFDTEK Unmodified 991.46108 0.4610751 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.362 14.139 2 0.036042 3234 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 58.23 38.743 107390000 22658000 20576000 18577000 2766300 4251100 3779900 0 9553300 11821000 951110 621940 0 0 6019100 2706400 0 0 0 0 0 3107200 0 0 0 1711 1528 1647 33728;33729;33730;33731;33732;33733;33734;33735;33736;33737;33738;33739;33740 20928;20929 20928 2 ANPDAVVVAIICDR Unmodified 1511.7766 0.77661235 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 2 2 2 2 2 49.114 47.801 2;3 1.5532E-11 22296 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 177.1 169.82 617110000 11609000 16962000 51096000 0 0 0 17716000 20583000 19072000 0 0 0 77703000 77243000 68874000 0 0 0 81720000 88326000 86207000 0 0 0 1712 1133 1648 33741;33742;33743;33744;33745;33746;33747;33748;33749;33750;33751;33752;33753;33754;33755;33756;33757;33758;33759 20930;20931;20932;20933;20934;20935;20936;20937;20938;20939;20940;20941;20942;20943;20944;20945;20946;20947;20948;20949;20950;20951 20947 22 ANPDDTFEAQLFYGDLK Unmodified 1942.8949 0.89487281 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 2 2 2 2 1 2 51.105 49.851 2;3 7.1124E-14 23334 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 165.54 157.67 372340000 0 3694700 6006500 0 0 0 51601000 50899000 35021000 0 0 0 41740000 42078000 41622000 0 0 0 32835000 27803000 39041000 0 0 0 1713 1588 1649 33760;33761;33762;33763;33764;33765;33766;33767;33768;33769;33770;33771;33772;33773;33774;33775;33776;33777 20952;20953;20954;20955;20956;20957;20958;20959;20960;20961 20958 10 ANPDMSAMVEGIELTLK Unmodified 1817.8903 0.89032148 211 P09372 grpE Protein GrpE yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 54.605 53.158 3 5.3929E-07 25311 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 105.39 104.98 605390000 58377000 0 41864000 1232600 0 0 42713000 44690000 39242000 9102500 11178000 10312000 63037000 53785000 58929000 0 0 0 55722000 50743000 57960000 2529700 3972900 0 1714 211 1650 33778;33779;33780;33781;33782;33783;33784;33785;33786;33787;33788;33789;33790;33791;33792;33793;33794;33795 20962;20963;20964;20965;20966;20967;20968;20969;20970 20968 9 ANPDYLR Unmodified 847.41882 0.41881635 813 P0ADV7 mlaC Probable phospholipid-binding protein MlaC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.652 15.436 2 0.0030249 5234 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.7 99.519 149190000 17064000 1756300 0 0 0 0 0 22728000 21129000 0 0 0 13766000 12098000 11827000 0 0 0 18204000 15005000 15610000 0 0 0 1715 813 1651 33796;33797;33798;33799;33800;33801;33802;33803;33804;33805 20971 20971 1 ANPEDFVVVEDLGFEPDGEGEHILVR Unmodified 2881.377 0.3770177 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 52.572 51.333 3 2.1018E-10 24140 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 117.82 111.02 284830000 24028000 26521000 22865000 0 0 0 21594000 0 19764000 0 0 0 33072000 25099000 24424000 0 0 0 28199000 29820000 29442000 0 0 0 1716 1979 1652 33806;33807;33808;33809;33810;33811;33812;33813;33814;33815;33816 20972;20973;20974;20975;20976;20977;20978 20978 7 ANPELLAK Unmodified 854.48617 0.48616764 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 16.311 17.184 2 0.010005 6107 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.116 59.677 78467000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22346000 0 0 0 30683000 0 25438000 0 0 0 1717 623 1653 33817;33818;33819;33820;33821;33822;33823;33824 20979;20980;20981;20982;20983;20984;20985;20986 20980 8 ANPEQLEEQR Unmodified 1212.5735 0.57347909 919 P0AF90 rraB Regulator of ribonuclease activity B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 13.645 14.548 2 0.0056025 4524 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.816 66.799 364360000 63871000 66351000 58964000 0 0 0 0 0 0 0 0 0 28415000 24231000 20597000 0 0 0 33726000 34034000 34174000 0 0 0 1718 919 1654 33825;33826;33827;33828;33829;33830;33831;33832;33833 20987;20988;20989;20990 20989 1 ANPEQLEEQREETR Unmodified 1727.8075 0.80745479 919 P0AF90 rraB Regulator of ribonuclease activity B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 12.795 13.57 2;3 6.634E-45 4013 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 284.12 277.68 3482100000 367360000 375330000 419310000 0 3068100 0 365860000 399260000 359920000 5540000 3820500 3111900 167540000 153850000 152010000 0 0 0 236920000 221360000 247800000 0 0 0 1719 919 1655 33834;33835;33836;33837;33838;33839;33840;33841;33842;33843;33844;33845;33846;33847;33848;33849;33850;33851;33852;33853;33854;33855;33856;33857;33858;33859;33860;33861 20991;20992;20993;20994;20995;20996;20997;20998;20999;21000;21001;21002;21003;21004;21005;21006;21007;21008;21009;21010;21011;21012;21013;21014 21002 24 ANPQPELLK Unmodified 1008.5604 0.56039521 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.43 19.906 2 0.00052939 7595 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.9 103.21 6764600000 2260000000 1979900000 1901300000 2598000 2417900 2691800 13273000 15343000 14929000 0 0 0 41247000 40996000 36431000 0 0 0 148250000 143290000 161870000 0 0 0 1720 318 1656 33862;33863;33864;33865;33866;33867;33868;33869;33870;33871;33872;33873;33874;33875;33876 21015;21016;21017;21018;21019 21015 5 ANPSSLLSTCYEK Unmodified 1468.6868 0.68679429 1894 P77304 dtpA Dipeptide and tripeptide permease A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.743 27.332 2 3.7363E-05 12857 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 100.72 84.09 198450000 12466000 13388000 11576000 2454400 2527100 0 14171000 13981000 16462000 4739500 2852600 2724500 13411000 11388000 8862000 1063900 0 0 18463000 22826000 19874000 2285000 2936700 0 1721 1894 1657 33877;33878;33879;33880;33881;33882;33883;33884;33885;33886;33887;33888;33889;33890;33891;33892;33893;33894;33895;33896 21020;21021;21022;21023;21024 21022 5 ANPTVIK Unmodified 741.43849 0.43848916 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.137 12.938 2 0.022706 3658 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 74.415 22.142 1229900000 204000000 181810000 206830000 1482200 2051200 1483500 155080000 148490000 145930000 793100 640210 0 27947000 30112000 27537000 0 0 0 31365000 32030000 32331000 0 0 0 1722 1960 1658 33897;33898;33899;33900;33901;33902;33903;33904;33905;33906;33907;33908;33909;33910;33911;33912;33913 21025;21026;21027;21028;21029;21030;21031;21032;21033;21034;21035;21036 21033 12 ANPWQQFAETHNK Unmodified 1569.7324 0.73243935 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 26.432 25.272 2;3 3.906E-12 11734 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 230.66 229.7 7948800000 985000000 904520000 836290000 9365400 6879800 8198400 569140000 489490000 554600000 22166000 24431000 29983000 511030000 494810000 501600000 18231000 17694000 16762000 633350000 654150000 611790000 14918000 17890000 16461000 1723 990 1659 33914;33915;33916;33917;33918;33919;33920;33921;33922;33923;33924;33925;33926;33927;33928;33929;33930;33931;33932;33933;33934;33935;33936;33937;33938;33939;33940;33941;33942;33943;33944;33945;33946;33947;33948;33949;33950;33951;33952;33953;33954;33955;33956;33957;33958;33959;33960;33961;33962 21037;21038;21039;21040;21041;21042;21043;21044;21045;21046;21047;21048;21049;21050;21051;21052;21053;21054;21055;21056;21057;21058;21059;21060;21061;21062;21063;21064;21065;21066;21067;21068;21069;21070 21046 34 ANPWQQFAETHNKGDR Unmodified 1897.882 0.88195713 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.962 21.588 3 1.2769E-08 6370 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 121.79 117.82 68648000 0 0 0 3261600 2677300 1835100 0 0 0 10026000 7382700 6507100 0 0 0 10358000 3628400 3299200 1779600 3608300 0 5399000 3604700 5280000 1724 990 1660 33963;33964;33965;33966;33967;33968;33969;33970;33971;33972;33973;33974;33975;33976 21071;21072;21073;21074;21075;21076;21077;21078 21071 8 ANPWQQFAETHNKGDRVEGK Unmodified 2311.1094 0.10939089 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 3 3 3 3 3 3 3 2 2 20.033 20.029 3;4;5 6.6943E-07 5455 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 95.666 91.934 452360000 0 0 0 36029000 31329000 33947000 0 0 0 41758000 39747000 49711000 0 0 0 53299000 49136000 53948000 0 0 0 33772000 16276000 13405000 1725 990 1661 33977;33978;33979;33980;33981;33982;33983;33984;33985;33986;33987;33988;33989;33990;33991;33992;33993;33994;33995;33996;33997;33998;33999;34000;34001;34002;34003;34004;34005;34006;34007;34008;34009;34010 21079;21080;21081;21082;21083;21084;21085;21086;21087;21088;21089;21090;21091;21092;21093;21094;21095 21083 17 ANQGIMEFVEMFK Unmodified 1542.7211 0.72107131 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.918 53.455 2 6.7592E-09 26275 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.97 159.71 863860000 183120000 154180000 154450000 1839000 1861200 0 81509000 82835000 74822000 1813600 0 0 26741000 16831000 25448000 0 0 0 19681000 23291000 15437000 0 0 0 1726 757 1662 34011;34012;34013;34014;34015;34016;34017;34018;34019;34020;34021;34022;34023;34024;34025 21096;21097;21098;21099;21100;21101 21101 6 ANQHLER Unmodified 866.43586 0.4358634 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 6.1994 6.9034 2 0.028102 1040 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.472 67.667 70489000 0 0 0 0 0 332870 5680500 8880100 7180300 2987200 2912500 2911100 5661000 5948500 0 0 0 0 8961700 9819000 9213800 0 0 0 1727 717 1663 34026;34027;34028;34029;34030;34031;34032;34033;34034;34035;34036;34037 21102;21103;21104 21104 2 ANQLAELAHQR Unmodified 1249.6527 0.65273247 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 16.854 17.615 2 1.909E-07 4668 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 130.75 126.3 26624000 6411500 6579500 7478300 2961700 0 3192700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1728 114 1664 34038;34039;34040;34041;34042;34043 21105;21106;21107;21108;21109 21106 5 ANRLEELFVSLVNEK Unmodified 1759.9468 0.9468488 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 53.333 51.859 3 0.012897 20748 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 43.557 32.512 10127000 0 0 0 0 0 0 0 0 0 2908700 2451700 3351800 0 0 0 0 0 0 0 0 0 1414700 0 0 1729 1447 1665 34044;34045;34046;34047 21110 21110 1 ANSGHPGAPMGMADIAEVLWNDFLK Unmodified 2640.2465 0.246478 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.735 54.251 3 3.8898E-10 26748 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 115.45 115.43 900280000 199790000 194100000 179130000 0 0 0 69396000 52669000 74460000 0 0 0 0 26744000 24311000 0 0 0 25136000 29060000 25487000 0 0 0 1730 1423 1666 34048;34049;34050;34051;34052;34053;34054;34055;34056;34057;34058 21111;21112;21113;21114;21115;21116;21117;21118 21116 6 ANSHAPEAVVEGASR Unmodified 1493.7223 0.7222686 683 P0ABU9 tolQ Protein TolQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 13.06 13.751 2;3 9.8943E-09 3505 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 101.72 96.444 520010000 9055700 39705000 24460000 6187800 4498800 5712000 30506000 30690000 32570000 17499000 14784000 14152000 41119000 33045000 31954000 0 3186900 3657400 57615000 52391000 51644000 6410700 6114600 3053900 1731 683 1667 34059;34060;34061;34062;34063;34064;34065;34066;34067;34068;34069;34070;34071;34072;34073;34074;34075;34076;34077;34078;34079;34080;34081;34082;34083;34084;34085;34086;34087;34088;34089;34090;34091;34092;34093;34094;34095;34096;34097;34098;34099;34100 21119;21120;21121;21122;21123;21124;21125;21126;21127;21128;21129;21130;21131 21124 13 ANSNICTSQVLLANIASLYAVYHGPVGLK Unmodified 3072.6066 0.60664048 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 54.79 53.333 3 9.4818E-17 26198 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 153.23 151.01 440710000 0 35627000 42719000 0 0 0 57606000 61146000 49857000 0 0 0 0 36006000 31091000 0 0 0 0 65638000 61014000 0 0 0 1732 1409 1668 34101;34102;34103;34104;34105;34106;34107;34108;34109 21132;21133;21134;21135 21133 3 ANSSTTTAAEPLK Unmodified 1289.6463 0.64630969 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.02 13.684 2 6.0813E-08 4072 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 156.48 152.89 3796100000 181130000 144870000 160010000 2124200 1871300 1737900 368370000 342960000 365540000 18535000 16278000 18386000 429850000 399860000 393980000 0 0 1961200 290810000 313070000 337080000 2187300 3372600 2078600 1733 539 1669 34110;34111;34112;34113;34114;34115;34116;34117;34118;34119;34120;34121;34122;34123;34124;34125;34126;34127;34128;34129;34130;34131;34132 21136;21137;21138;21139;21140;21141;21142;21143;21144;21145;21146;21147;21148;21149;21150;21151;21152;21153 21139 18 ANSVDTVMGPLTWDEK Unmodified 1761.8244 0.82435041 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.171 43.832 2 4.9884E-19 21326 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 199.8 198.29 115190000 40515000 37857000 36817000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1734 774 1670 34133;34134;34135 21154;21155;21156 21155 3 ANSYVIGDR Unmodified 993.48796 0.48795855 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.752 17.334 2 0.0011727 5172 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.318 78.281 138640000 17994000 17252000 16037000 0 0 0 11941000 16128000 14794000 3105700 2663700 0 10222000 10451000 8049500 0 0 0 0 0 9998400 0 0 0 1735 139 1671 34136;34137;34138;34139;34140;34141;34142;34143;34144;34145;34146;34147 21157;21158;21159;21160 21157 1 ANTGVTLEPINSQNAPK Unmodified 1752.9006 0.90062689 1660 P63235 gadC Probable glutamate/gamma-aminobutyrate antiporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 1 26.304 24.969 2;3 1.2742E-24 9411 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 219.97 212.36 1638800000 83062000 77015000 79081000 24367000 23407000 27404000 303190000 287610000 294770000 138580000 132310000 117860000 4068600 9303300 6853000 0 0 0 7695400 7938800 11745000 1228800 0 1327800 1736 1660 1672 34148;34149;34150;34151;34152;34153;34154;34155;34156;34157;34158;34159;34160;34161;34162;34163;34164;34165;34166;34167;34168;34169;34170;34171;34172;34173;34174;34175;34176;34177;34178;34179;34180 21161;21162;21163;21164;21165;21166;21167;21168;21169;21170;21171;21172;21173;21174;21175;21176;21177;21178;21179;21180;21181 21161 21 ANTSSMDYYHQLR Unmodified 1584.6991 0.69909031 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 19.861 20.351 2;3 1.0169E-08 7835 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 198.72 198.72 948000000 172980000 154810000 148300000 1845000 1810200 2445400 32335000 27722000 34162000 0 0 0 43165000 43622000 39384000 0 0 0 83252000 81076000 81097000 0 0 0 1737 34 1673 34181;34182;34183;34184;34185;34186;34187;34188;34189;34190;34191;34192;34193;34194;34195;34196;34197;34198;34199;34200;34201;34202;34203;34204;34205;34206;34207;34208 21182;21183;21184;21185;21186;21187;21188;21189;21190;21191;21192;21193;21194;21195 21188 14 ANVDILTLTATPIPR Unmodified 1593.909 0.90900673 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.563 48.245 2 0.00024005 17434 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 81.431 74.543 137370000 16627000 16161000 15437000 0 475390 0 13488000 12303000 9580900 1088300 0 0 8454500 6904900 6244400 0 2780500 0 7726200 11773000 8330500 0 0 0 1738 1355 1674 34209;34210;34211;34212;34213;34214;34215;34216;34217;34218;34219;34220;34221;34222;34223 21196 21196 0 ANVEIYTK Unmodified 936.49165 0.49164694 704 P0AC62 grxC Glutaredoxin-3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.939 16.754 2 0.00055247 5826 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.12 113.63 3204000000 369550000 373420000 390230000 0 0 0 298970000 301050000 301080000 0 0 0 205610000 182690000 173000000 0 0 0 200170000 195130000 213140000 0 0 0 1739 704 1675 34224;34225;34226;34227;34228;34229;34230;34231;34232;34233;34234;34235 21197;21198;21199;21200;21201;21202;21203;21204;21205;21206;21207;21208 21199 12 ANVESGK Unmodified 703.35007 0.35006808 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 1 2 2 1 1 1 1 5.7727 6.6362 2 0.02496 986 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 72.138 41.47 137540000 9971200 20314000 14449000 31965 0 0 9762400 13294000 280460 0 0 0 13097000 7867900 8402300 0 0 0 11330000 15795000 12940000 0 0 0 1740 1900 1676 34236;34237;34238;34239;34240;34241;34242;34243;34244;34245;34246;34247;34248;34249;34250;34251;34252;34253;34254 21209;21210;21211;21212;21213;21214;21215;21216 21209 8 ANVLQSSILWR Unmodified 1285.7143 0.71427009 1336 P30125 leuB 3-isopropylmalate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.799 41.155 2 0.036126 19877 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.573 68.96 165990000 46498000 42391000 40255000 0 0 0 3552900 5557800 3191200 0 0 0 5243400 4282800 3187800 0 0 0 2810100 4292000 4725800 0 0 0 1741 1336 1677 34255;34256;34257;34258;34259;34260;34261;34262;34263;34264;34265;34266 21217;21218 21218 0 ANVSQVMHIIGDVAGR Unmodified 1665.8621 0.86207332 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 42.056 40.559 2;3 3.114E-61 19859 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 299.04 282.13 7206700000 598270000 629710000 601550000 30098000 24841000 27589000 475300000 453480000 472450000 0 0 0 585450000 540320000 495420000 58282000 56819000 65293000 582460000 606880000 616020000 101890000 93550000 91004000 1742 300 1678 34267;34268;34269;34270;34271;34272;34273;34274;34275;34276;34277;34278;34279;34280;34281;34282;34283;34284;34285;34286;34287;34288;34289;34290;34291;34292;34293;34294;34295;34296;34297;34298;34299;34300;34301;34302;34303;34304;34305;34306;34307;34308 21219;21220;21221;21222;21223;21224;21225;21226;21227;21228;21229;21230;21231;21232;21233;21234;21235;21236;21237;21238;21239;21240;21241;21242;21243;21244;21245;21246;21247;21248;21249;21250;21251;21252;21253;21254;21255 21235 37 ANVSTTTVSHVINK Unmodified 1469.7838 0.78380622 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 2 2 2 2 1 2 1 1 2 2 2 16.214 16.992 2;3 8.5491E-09 5950 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.33 139.2 615590000 63092000 66380000 77638000 8997300 7844600 5492700 52832000 49308000 57815000 0 0 0 35505000 10482000 33395000 1357300 0 1218800 48507000 47520000 48206000 0 0 0 1743 740 1679 34309;34310;34311;34312;34313;34314;34315;34316;34317;34318;34319;34320;34321;34322;34323;34324;34325;34326;34327;34328;34329;34330;34331;34332;34333;34334;34335;34336 21256;21257;21258;21259;21260;21261;21262;21263;21264;21265;21266;21267;21268;21269;21270;21271;21272;21273;21274;21275;21276;21277;21278 21271 23 ANVYEVR Unmodified 849.43447 0.43446642 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 2 2 1 1 1 1 1 1 1 1 14.203 14.937 2 0.0010138 4818 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.85 110.32 1186600000 46190000 49874000 48373000 0 0 0 321960000 290690000 282720000 2969400 3130200 0 16328000 17755000 13388000 0 0 0 30832000 33580000 28795000 0 0 0 1744 1265 1680 34337;34338;34339;34340;34341;34342;34343;34344;34345;34346;34347;34348;34349;34350;34351;34352;34353 21279;21280;21281;21282;21283;21284 21280 6 ANYFNTLNLR Unmodified 1224.6251 0.62512073 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 36.343 34.809 2 0.00031388 16661 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.17 95.907 155220000 37946000 42222000 30961000 0 0 0 14003000 14618000 0 0 0 0 6202400 0 3072500 0 0 0 0 0 6196100 0 0 0 1745 119 1681 34354;34355;34356;34357;34358;34359;34360;34361 21285 21285 1 ANYGGLDVEIAAVIGNHDTLR Unmodified 2197.1127 0.11274493 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 50.233 48.822 3 1.0835E-10 23621 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.14 124.75 554390000 110480000 98037000 0 0 0 0 31914000 26388000 27728000 0 0 0 36666000 32456000 35569000 0 0 0 54739000 54380000 46039000 0 0 0 1746 1455 1682 34362;34363;34364;34365;34366;34367;34368;34369;34370;34371;34372 21286;21287;21288;21289;21290;21291;21292;21293;21294;21295 21291 10 ANYSNPPAHGASVVATILSNDALR Unmodified 2437.235 0.23498533 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 3 2 3 3 3 3 3 3 43.479 41.969 2;3;4 3.9973E-50 20293 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 286.6 277.15 4145400000 480560000 419000000 405470000 0 0 0 368710000 353840000 367360000 0 0 0 246630000 276500000 255000000 0 0 0 329410000 319870000 323110000 0 0 0 1747 31 1683 34373;34374;34375;34376;34377;34378;34379;34380;34381;34382;34383;34384;34385;34386;34387;34388;34389;34390;34391;34392;34393;34394;34395;34396;34397;34398;34399;34400;34401;34402;34403;34404;34405;34406 21296;21297;21298;21299;21300;21301;21302;21303;21304;21305;21306;21307;21308;21309;21310;21311;21312;21313;21314;21315;21316;21317;21318;21319 21313 24 APAATSTPAPK Unmodified 1010.5397 0.53965977 1072 P11557 damX Cell division protein DamX yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.212 11.907 2 1.9764E-07 2892 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 166.16 152 335780000 14726000 12641000 18909000 3880700 4522000 4839600 24189000 31575000 34180000 10491000 9355200 7615100 21681000 21854000 20632000 0 0 0 28908000 23622000 27389000 5350400 4594700 4827600 1748 1072 1684 34407;34408;34409;34410;34411;34412;34413;34414;34415;34416;34417;34418;34419;34420;34421;34422;34423;34424;34425;34426;34427 21320;21321;21322;21323;21324;21325;21326;21327;21328;21329;21330;21331;21332;21333;21334;21335;21336;21337 21335 17 APAEPQR Unmodified 767.3926 0.3926016 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 10.097 10.93 2 0.001505 2389 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.82 96.702 720410000 159830000 102210000 45320000 0 0 0 0 0 4462700 0 0 0 15336000 17646000 9282900 0 0 0 116470000 109060000 140790000 0 0 0 1749 542 1685 34428;34429;34430;34431;34432;34433;34434;34435;34436;34437 21338;21339;21340;21341;21342;21343;21344;21345;21346;21347 21342 10 APAEPQRYDAVLVAIGR Unmodified 1824.9846 0.98463129 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 36.403 34.629 2;3 2.9152E-24 13399 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 218.06 204.16 1942100000 0 0 0 306320000 308990000 320200000 0 0 0 36863000 27386000 30595000 0 0 0 14706000 10346000 10060000 0 0 0 307410000 288610000 280650000 1750 542 1686 34438;34439;34440;34441;34442;34443;34444;34445;34446;34447;34448;34449;34450;34451;34452;34453;34454;34455;34456;34457;34458 21348;21349;21350;21351;21352;21353;21354;21355;21356;21357;21358;21359;21360;21361;21362;21363;21364;21365 21354 17 APAIVMDDADLELAVK Unmodified 1669.8597 0.85967328 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 46.942 45.549 2;3 1.3259E-13 22122 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.23 164.71 2595200000 596140000 600900000 517740000 1830400 1935000 1061300 81090000 69315000 58941000 0 0 0 87602000 78401000 78343000 0 0 0 144400000 142920000 134560000 0 0 0 1751 1264 1687 34459;34460;34461;34462;34463;34464;34465;34466;34467;34468;34469;34470;34471;34472;34473;34474;34475;34476;34477;34478;34479;34480;34481;34482;34483;34484;34485 21366;21367;21368;21369;21370;21371;21372;21373;21374;21375;21376;21377;21378;21379;21380;21381;21382;21383;21384 21370 18 APAIVMDDADLELAVK Oxidation (M) 1685.8546 0.8545879 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 1 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 40.949 39.64 2 4.3528E-08 19686 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 117.98 114.63 157120000 23795000 15764000 14856000 0 0 0 1648100 0 0 0 0 0 0 0 0 0 0 101050000 0 0 0 0 0 0 1752 1264 1687 34486;34487;34488;34489;34490 21385;21386;21387 21387 521 2 APAKESAPAAAAPAAQPALAAR Unmodified 2000.0803 0.080322592 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 18.111 18.474 3 0.00018305 5069 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 69.256 68.292 34895000 0 0 0 5627600 4325400 4938900 0 0 0 0 0 0 0 0 0 0 0 1800000 0 0 0 6242000 6542100 5418600 1753 938 1688 34491;34492;34493;34494;34495;34496;34497 21388;21389;21390;21391;21392 21392 5 APAMMAGHSLGEYSALVCAGVIDFADAVR Unmodified 2978.4089 0.40886865 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 2 1 2 1 1 54.871 53.4 3 4.1078E-24 26506 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 179.38 178.31 1136900000 81009000 79167000 80436000 0 0 0 80657000 68830000 68614000 0 0 0 111460000 119100000 105310000 0 0 0 122240000 119400000 100690000 0 0 0 1754 597 1689 34498;34499;34500;34501;34502;34503;34504;34505;34506;34507;34508;34509;34510;34511;34512;34513 21393;21394;21395;21396;21397;21398;21399;21400;21401;21402;21403;21404 21399 12 APAPEYVPEAPR Unmodified 1295.651 0.65100113 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.155 23.151 2 2.4249E-06 10001 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142 135.06 387260000 33111000 40815000 36027000 3412000 3461400 3735100 24809000 26022000 29555000 4605700 2795500 3005500 20340000 21242000 22728000 0 0 0 37776000 36626000 30752000 1992600 2438600 2005400 1755 1183 1690 34514;34515;34516;34517;34518;34519;34520;34521;34522;34523;34524;34525;34526;34527;34528;34529;34530;34531;34532;34533;34534 21405;21406;21407;21408;21409;21410;21411;21412;21413;21414;21415;21416;21417;21418;21419;21420;21421 21419 17 APDFLKDIGGLETNR Unmodified 1644.8471 0.84713476 27 P00393 ndh NADH dehydrogenase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.112 39.609 3 0.00017357 15741 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 62.861 56.424 45519000 0 0 0 2796300 2209900 3805800 0 0 0 5950900 6951400 8180600 0 0 0 2984100 3157200 3844100 0 0 0 0 2717100 2921900 1756 27 1691 34535;34536;34537;34538;34539;34540;34541;34542;34543;34544;34545 21422;21423;21424;21425;21426;21427 21425 6 APDILSNATSR Unmodified 1143.5884 0.58840088 739 P0ACP5 gntR HTH-type transcriptional regulator GntR yes yes 0 0 0 By MS/MS 1 22.835 22.298 2 0.013184 9190 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 60.102 36.674 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1757 739 1692 34546 21428 21428 1 APDYQITDIDLTFDLDAQK Unmodified 2181.0477 0.047744639 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 54.092 52.654 2;3 2.4734E-23 26059 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 251.68 246.38 262550000 26906000 24904000 19291000 0 0 0 27963000 28250000 17992000 0 0 0 21373000 14265000 15335000 0 0 0 20283000 20428000 20050000 0 5511800 0 1758 94 1693 34547;34548;34549;34550;34551;34552;34553;34554;34555;34556;34557;34558;34559;34560;34561;34562;34563;34564;34565;34566;34567;34568;34569;34570;34571 21429;21430;21431;21432;21433;21434;21435;21436 21432 6 APEAVIAK Unmodified 797.4647 0.46470391 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS 2 2 1 1 1 1 1 1 1 1 1 1 1 13.001 13.878 2 0.0010111 4310 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.7 48.92 1573000000 166860000 151950000 144550000 1514100 0 2259400 0 0 155140000 0 0 0 145560000 141710000 131960000 0 0 0 186440000 191100000 153940000 0 0 0 1759 158 1694 34572;34573;34574;34575;34576;34577;34578;34579;34580;34581;34582;34583;34584;34585;34586 21437;21438;21439;21440;21441 21439 5 APECFYIEQK Unmodified 1283.5856 0.58562368 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.876 24.804 2 4.2967E-06 11084 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 156.62 152.28 1882100000 281260000 256760000 247690000 0 0 0 127280000 131580000 124050000 0 0 0 105810000 98255000 90614000 0 0 0 136030000 136670000 146140000 0 0 0 1760 1872 1695 34587;34588;34589;34590;34591;34592;34593;34594;34595;34596;34597;34598 21442;21443;21444;21445;21446;21447;21448;21449;21450;21451;21452;21453 21448 12 APECIEFANK Unmodified 1177.5438 0.54375887 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.661 21.708 2 8.0544E-09 8918 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.76 169.8 2060000000 87021000 65588000 71547000 0 0 0 270700000 292930000 245680000 0 0 0 165000000 167270000 140980000 0 0 0 189370000 188720000 175140000 0 0 0 1761 348 1696 34599;34600;34601;34602;34603;34604;34605;34606;34607;34608;34609;34610 21454;21455;21456;21457;21458;21459;21460;21461;21462;21463;21464;21465 21457 12 APEFTPSQTEEGDLHYGHGEAGTHAPGMSQR Unmodified 3293.4432 0.44321656 603 P0AAN3 hypB Hydrogenase isoenzymes nickel incorporation protein HypB yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 2 21.729 21.707 4;5 1.4093E-24 8336 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 169.57 167.93 1139700000 40009000 39094000 34621000 0 0 0 98899000 143220000 140810000 0 2032600 4031700 126190000 110720000 105370000 0 0 0 106040000 83364000 105340000 0 0 0 1762 603 1697 34611;34612;34613;34614;34615;34616;34617;34618;34619;34620;34621;34622;34623;34624;34625;34626;34627;34628;34629;34630;34631;34632;34633;34634;34635;34636;34637 21466;21467;21468;21469;21470;21471;21472;21473;21474;21475;21476;21477;21478;21479;21480;21481;21482;21483;21484 21484 19 APEGFFYLRPR Unmodified 1351.7037 0.70370541 1198 P22524 mukE Chromosome partition protein MukE yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.622 31.959 3 3.7753E-05 15621 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.24 103.93 272730000 24365000 22512000 21065000 1131500 1276200 1439900 22184000 21778000 25160000 2981600 2601400 2980500 13389000 15914000 12448000 0 0 0 24033000 24713000 28326000 2250400 0 2176400 1763 1198 1698 34638;34639;34640;34641;34642;34643;34644;34645;34646;34647;34648;34649;34650;34651;34652;34653;34654;34655;34656;34657 21485;21486;21487;21488 21485 1 APEIAQLGLR Unmodified 1066.6135 0.61349341 1406 P33024;P33021 psuT;nupX Putative pseudouridine transporter;Nucleoside permease NupX yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.704 32.264 2 0.00060948 15326 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 91.9 50.269 481290000 41910000 46739000 37402000 0 0 0 54677000 48509000 43395000 0 0 0 6897800 5902100 5917100 0 0 0 60574000 64648000 64723000 0 0 0 1764 1406 1699 34658;34659;34660;34661;34662;34663;34664;34665;34666;34667;34668;34669 21489;21490;21491;21492;21493;21494;21495 21493 7 APEQVMQLIEHLR Unmodified 1562.8239 0.8238969 1239 P24192 hypD Hydrogenase isoenzymes formation protein HypD yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.422 44.8 3 3.3628E-07 22172 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 113.69 108.38 254080000 6079400 7074900 6112800 0 0 0 30809000 29306000 29817000 1977000 2335000 1647900 23573000 27302000 27237000 0 0 0 17678000 21236000 21899000 0 0 0 1765 1239 1700 34670;34671;34672;34673;34674;34675;34676;34677;34678;34679;34680;34681;34682;34683;34684 21496;21497;21498;21499;21500;21501;21502;21503;21504;21505 21498 10 APESLPNPLLK Unmodified 1177.6707 0.67067394 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.414 32.966 2 0.00019328 15644 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.36 101.16 119260000 21259000 20915000 13572000 0 0 0 5979000 4873800 6929500 0 0 0 5999300 5714500 3336100 0 0 0 8908500 10106000 11671000 0 0 0 1766 1664 1701 34685;34686;34687;34688;34689;34690;34691;34692;34693;34694;34695;34696 21506;21507;21508;21509 21508 3 APESTPTVYR Unmodified 1119.556 0.55603811 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.056 15.878 2 1.0961E-08 5041 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 180.87 166.71 799670000 26062000 20621000 24251000 0 0 280390 122230000 109350000 107910000 0 0 0 65673000 64168000 65495000 0 0 0 71628000 62882000 59130000 0 0 0 1767 167 1702 34697;34698;34699;34700;34701;34702;34703;34704;34705;34706;34707;34708;34709 21510;21511;21512;21513;21514;21515;21516;21517;21518;21519 21519 10 APEVVEEQR Unmodified 1055.5247 0.52473799 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.975 13.541 2 4.4636E-05 4032 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 150.4 119.4 309060000 24567000 20776000 16779000 0 2774900 0 18541000 19287000 16889000 20736000 14153000 13465000 13410000 10747000 14795000 4154600 3374300 2469300 20829000 25263000 20552000 9490500 6501200 9510500 1768 1451 1703 34710;34711;34712;34713;34714;34715;34716;34717;34718;34719;34720;34721;34722;34723;34724;34725;34726;34727;34728;34729;34730;34731 21520;21521;21522;21523;21524;21525 21524 6 APFLDMAFDEWRK Unmodified 1624.7708 0.77079869 1422 P33368 yohF Uncharacterized oxidoreductase YohF yes yes 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 48.168 46.874 3 0.011552 22763 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 40.552 40.165 18605000 4605100 4194800 7957000 781350 1067000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1769 1422 1704 34732;34733;34734;34735;34736 21526 21526 1 APFSAFLR Unmodified 907.49159 0.49158736 105 P05041 pabB Aminodeoxychorismate synthase component 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 38.132 36.479 2 0.00069119 17687 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.65 69.073 31149000 4154300 5063400 3257600 0 0 0 3239500 0 2669800 0 0 0 3144600 0 1959800 0 0 0 3805400 0 3854300 0 0 0 1770 105 1705 34737;34738;34739;34740;34741;34742;34743;34744;34745;34746 21527;21528;21529;21530 21528 4 APFVILMVGVNGVGK Unmodified 1499.8534 0.85340611 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS 1 1 53.793 52.371 2 4.7841E-09 20961 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 153.05 139.05 8605900 0 0 0 0 0 0 0 0 0 0 3645200 4960700 0 0 0 0 0 0 0 0 0 0 0 0 1771 1052 1706 34747;34748 21531;21532 21532 2 APFWVEK Unmodified 875.45414 0.45413923 223 P0A6A0 ubiB Probable protein kinase UbiB yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 30.092 28.62 2 0.062465 13436 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.76 37.717 28391000 0 0 0 411140 0 0 0 3392600 4055600 0 0 0 0 2468200 3726200 0 0 0 4668600 4196400 4757300 714510 0 0 1772 223 1707 34749;34750;34751;34752;34753;34754;34755;34756;34757 21533;21534;21535;21536;21537 21534 5 APGFGDR Unmodified 718.33984 0.33983775 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 12.797 13.476 1;2 0.00097355 2910 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 139.92 139.92 7145000000 703990000 609570000 651720000 17032000 16201000 16936000 602740000 625380000 600030000 8055900 7664900 7527400 460000000 420130000 420330000 3954400 3445200 2744300 652010000 666140000 624990000 8564500 9014300 6818600 1773 240 1708 34758;34759;34760;34761;34762;34763;34764;34765;34766;34767;34768;34769;34770;34771;34772;34773;34774;34775;34776;34777;34778;34779;34780;34781;34782;34783;34784;34785;34786;34787;34788;34789;34790;34791;34792;34793 21538;21539;21540;21541;21542;21543;21544 21541 7 APGLAVVLVGSNPASQIYVASK Unmodified 2140.1892 0.18920434 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 50.644 49.305 2;3 1.0318E-15 24134 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.37 155.24 260200000 88506000 93720000 77974000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1774 1237 1709 34794;34795;34796;34797;34798;34799 21545;21546;21547;21548;21549;21550 21548 6 APGLTQALNTK Unmodified 1112.619 0.61897272 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.09 21.86 2 7.213E-27 9156 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 265.58 252.99 4390100000 0 0 0 2913200 1894700 2155100 372600000 379450000 348610000 5030700 4836400 4013700 519200000 562550000 515590000 0 0 0 575800000 585180000 499080000 4718700 3270800 3181400 1775 38 1710 34800;34801;34802;34803;34804;34805;34806;34807;34808;34809;34810;34811;34812;34813;34814;34815;34816;34817 21551;21552;21553;21554;21555;21556;21557;21558;21559;21560;21561 21553 10 APGMTMFK Unmodified 881.41393 0.41393067 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.146 24.067 2 0.0078415 10678 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 82.671 69 264390000 12890000 11768000 10699000 0 0 2049600 9983400 12118000 15058000 5001600 0 0 20207000 16874000 18776000 0 0 0 34129000 43500000 41674000 0 5202700 4462600 1776 660 1711 34818;34819;34820;34821;34822;34823;34824;34825;34826;34827;34828;34829;34830;34831;34832;34833;34834;34835;34836 21562;21563;21564;21565;21566;21567;21568;21569;21570;21571;21572;21573;21574 21568 13 APGSDKWQQISWEEAFDR Unmodified 2148.9865 0.98648179 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 42.017 40.289 3 0.0043813 14313 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 39.523 36.333 26031000 0 0 0 3392700 3429300 3574800 0 0 0 2349900 2106300 2295800 0 0 0 2504500 1110000 0 0 0 0 1564300 2201000 1502300 1777 1393 1712 34837;34838;34839;34840;34841;34842;34843;34844;34845;34846;34847 21575;21576;21577 21575 3 APGSDQR Unmodified 729.34057 0.34056603 812 P0ADV5 yhbW Uncharacterized protein YhbW yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 4.4231 5.3289 2 0.026174 933 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 70.912 65.374 36633000 0 0 0 0 0 0 0 3125000 0 0 0 0 5686600 5741000 3756000 0 0 0 8670500 9654100 0 0 0 0 1778 812 1713 34848;34849;34850;34851;34852;34853;34854 21578;21579;21580 21579 3 APHPSPLSAHR Unmodified 1168.6101 0.61013937 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.874 11.69 3 0.025802 2934 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 43.604 30.989 400520000 24844000 30302000 29884000 0 0 0 40977000 41850000 42653000 0 0 0 26706000 25500000 23058000 0 0 0 35783000 45984000 32983000 0 0 0 1779 1078 1714 34855;34856;34857;34858;34859;34860;34861;34862;34863;34864;34865;34866 21581;21582;21583 21583 3 APHVSEK Unmodified 766.39735 0.39735263 822 P0ADZ0 rplW 50S ribosomal protein L23 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.4818 7.21 2 0.0004087 984 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 154.92 115.16 2540500000 330530000 331520000 276000000 25521000 16236000 32688000 126990000 128340000 124730000 56015000 42850000 45196000 130570000 135940000 127690000 0 0 0 171440000 158340000 176340000 52184000 51400000 0 1780 822 1715 34867;34868;34869;34870;34871;34872;34873;34874;34875;34876;34877;34878;34879;34880;34881;34882;34883;34884;34885;34886;34887;34888 21584;21585;21586;21587;21588;21589;21590;21591;21592;21593;21594;21595;21596;21597;21598;21599;21600;21601;21602;21603 21602 20 APIGTGPWILQESK Unmodified 1495.8035 0.80347903 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 41.342 39.657 2 6.5153E-15 18587 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 198.29 193.68 479680000 0 6469800 6485000 0 0 0 46420000 45845000 48373000 0 0 0 58840000 55130000 51604000 0 0 0 57043000 47561000 55905000 0 0 0 1781 1424 1716 34889;34890;34891;34892;34893;34894;34895;34896;34897;34898;34899 21604;21605;21606;21607;21608;21609;21610;21611;21612;21613 21611 10 APIVHALR Unmodified 875.53412 0.53412088 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.561 14.303 2 0.0010839 4387 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 111.81 105.46 469850000 52720000 58695000 51392000 2146400 2058700 0 68925000 77953000 60859000 975190 1295300 957620 10648000 12923000 11635000 0 0 0 21220000 17779000 17668000 0 0 0 1782 147 1717 34900;34901;34902;34903;34904;34905;34906;34907;34908;34909;34910;34911;34912;34913;34914;34915;34916 21614;21615 21614 1 APIYFVSR Unmodified 951.5178 0.51780212 1657 P63204 gadE Transcriptional regulator GadE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.896 27.649 2 0.016638 10365 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 68.214 66.595 48580000 3479000 2675100 2424200 403620 0 0 5447800 4342500 0 4866100 6403900 6504200 0 0 0 5627900 3103600 3302100 0 0 0 0 0 0 1783 1657 1718 34917;34918;34919;34920;34921;34922;34923;34924;34925;34926;34927;34928 21616 21616 1 APKPGAELLLGDDESINATMTAR Unmodified 2369.1897 0.18967462 341 P0A7F9 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 38.629 36.994 3 0.00014005 17976 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.122 75.184 111350000 9358400 11245000 8360000 0 0 0 7621700 7426300 0 0 0 0 11329000 7508100 7635800 0 0 0 15902000 14148000 10814000 0 0 0 1784 341 1719 34929;34930;34931;34932;34933;34934;34935;34936;34937;34938;34939 21617;21618;21619 21617 3 APLAAEAMGIIAPR Unmodified 1379.7595 0.75950572 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 45.003 43.452 2;3 3.3338E-08 21261 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 180.07 172.94 1049300000 84855000 88378000 73877000 0 0 0 75566000 68949000 78457000 0 0 0 96302000 84301000 81247000 0 0 0 101850000 108670000 102170000 1824000 1198800 1702100 1785 651 1720 34940;34941;34942;34943;34944;34945;34946;34947;34948;34949;34950;34951;34952;34953;34954;34955;34956;34957;34958;34959;34960;34961;34962;34963;34964;34965;34966;34967;34968 21620;21621;21622;21623;21624;21625;21626;21627;21628;21629;21630;21631;21632;21633;21634;21635;21636;21637;21638;21639;21640;21641;21642;21643 21633 21 APLANNGSVLEQSTPNK Unmodified 1738.885 0.88497683 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 22.39 21.861 2 3.9567E-31 9179 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 299.2 291.1 68918000 22587000 18327000 18813000 0 0 0 2868500 3039800 3282900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1786 1160 1721 34969;34970;34971;34972;34973;34974 21644;21645;21646 21644 3 APLANNGSVLEQSTPNKWPEWDVPGGQLTTK Unmodified 3333.663 0.66296939 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 44.81 43.347 3 4.4965E-44 21009 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 224.9 224.74 120270000 36864000 45720000 28473000 0 0 0 6091100 0 0 0 0 0 0 0 3125200 0 0 0 0 0 0 0 0 0 1787 1160 1722 34975;34976;34977;34978;34979 21647;21648;21649 21649 3 APLDALR Unmodified 754.43374 0.43373813 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.502 21.948 2 0.0021148 8922 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 118.01 6.3234 162660000 20088000 20083000 14801000 0 0 0 14316000 9087900 9420700 0 0 0 11051000 10562000 8467200 0 0 0 13626000 17571000 13590000 0 0 0 1788 1355 1723 34980;34981;34982;34983;34984;34985;34986;34987;34988;34989;34990;34991 21650;21651;21652;21653;21654;21655;21656 21655 7 APLDIYLK Unmodified 931.53787 0.53786886 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 35.363 33.838 2 0.027319 16068 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 64.567 46.719 150490000 37452000 28227000 24482000 0 0 0 3797900 4891700 0 0 0 0 5033300 5836700 6626200 0 0 0 11221000 11596000 11328000 0 0 0 1789 1326 1724 34992;34993;34994;34995;34996;34997;34998;34999;35000;35001;35002 21657;21658;21659 21659 3 APLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVK Unmodified 4481.0919 0.091898195 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.811 50.563 5 1.076E-37 25061 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 188.49 188.45 1263700000 90394000 71617000 80606000 0 0 0 118980000 134550000 110110000 0 0 0 83615000 108700000 119100000 0 0 0 125670000 131570000 88763000 0 0 0 1790 1956 1725 35003;35004;35005;35006;35007;35008;35009;35010;35011;35012;35013;35014 21660;21661;21662;21663;21664;21665;21666;21667;21668;21669;21670;21671 21660 12 APLGATEMGLIYVNPEGPDHSGEPLSAAAAIR Unmodified 3203.5921 0.59211263 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.636 48.259 3 1.891E-13 23914 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.77 120.78 370570000 14893000 15441000 12559000 56891000 45224000 48314000 34581000 15713000 32803000 0 0 4584800 8620700 8131300 8696200 0 0 0 14357000 11930000 37832000 0 0 0 1791 1086 1726 35015;35016;35017;35018;35019;35020;35021;35022;35023;35024;35025;35026;35027;35028;35029;35030 21672 21672 1 APLIITVVAK Unmodified 1023.6692 0.66921738 756 P0ACY1 ydjA Putative NAD(P)H nitroreductase YdjA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 1 2 2 1 1 2 1 38.131 36.33 1;2 0.00042297 18113 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 104.06 104.06 1805500000 210270000 193240000 172090000 852980 1185600 1045400 158930000 153950000 177710000 813040 757050 708750 99296000 87652000 107470000 0 0 0 150220000 147050000 141770000 441320 0 0 1792 756 1727 35031;35032;35033;35034;35035;35036;35037;35038;35039;35040;35041;35042;35043;35044;35045;35046;35047;35048;35049;35050;35051;35052;35053;35054;35055;35056;35057;35058 21673;21674;21675;21676;21677;21678;21679;21680;21681;21682;21683;21684;21685 21673 12 APLLSVFGGK Unmodified 987.57532 0.57531699 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.133 38.522 2 9.3701E-05 15751 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 131.06 120.37 2030900000 9327800 11770000 8350300 614910 599710 689010 352950000 310570000 327630000 51416000 78398000 84380000 113740000 110380000 105660000 11238000 6544600 7928800 131410000 137710000 129660000 14621000 11851000 13473000 1793 1088 1728 35059;35060;35061;35062;35063;35064;35065;35066;35067;35068;35069;35070;35071;35072;35073;35074;35075;35076;35077;35078;35079;35080;35081;35082 21686;21687;21688;21689;21690;21691;21692;21693;21694;21695;21696;21697;21698;21699;21700;21701;21702 21688 17 APLNQADLR Unmodified 996.53524 0.53524309 1820 P76128 ddpA Probable D,D-dipeptide-binding periplasmic protein DdpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 16.607 17.425 2 1.4737E-05 6162 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.26 140.63 66387000 20633000 18709000 22057000 0 0 0 0 0 0 0 0 0 1123400 1139800 0 0 0 0 0 2725100 0 0 0 0 1794 1820 1729 35083;35084;35085;35086;35087;35088 21703;21704;21705 21704 3 APLPTPLP Unmodified 804.47454 0.47454032 1356 P31063 yedD Uncharacterized lipoprotein YedD yes yes 0 0 0 By MS/MS 1 42.401 40.846 2 0.13626 20060 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 42.773 25.687 114310000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 114310000 0 0 0 1795 1356 1730 35089 21706 21706 1 APLREEAK Unmodified 912.50288 0.50288033 332 P0A7D1 pth Peptidyl-tRNA hydrolase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 10.025 10.863 2 0.00038598 2449 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 151.5 121.31 60518000 19366000 15008000 0 0 0 0 0 0 0 0 0 0 2334600 2085500 0 0 0 0 7865000 5710200 8148600 0 0 0 1796 332 1731 35090;35091;35092;35093;35094;35095;35096 21707;21708 21707 2 APLVEELYR Unmodified 1088.5866 0.58660996 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.622 32.29 2 1.0203E-07 15344 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 183.24 173.65 1301000000 86831000 91867000 80029000 0 0 0 98893000 91621000 92737000 0 3372700 0 113410000 108590000 103170000 16139000 11980000 11933000 118040000 128750000 127150000 3906700 5652700 6878200 1797 124 1732 35097;35098;35099;35100;35101;35102;35103;35104;35105;35106;35107;35108;35109;35110;35111;35112;35113;35114;35115 21709;21710;21711;21712;21713;21714;21715;21716;21717;21718;21719;21720;21721;21722 21715 11 APLVMVVDHQR Unmodified 1263.6758 0.6757761 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 1 1 21.818 21.663 2;3 1.5667E-26 9293 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 258.85 239.76 2698600000 130910000 98520000 93630000 13721000 9147000 37814000 235180000 194590000 254530000 81135000 63201000 75596000 221650000 203680000 187980000 26647000 18282000 18801000 320690000 58031000 313170000 13629000 14979000 13052000 1798 1427 1733 35116;35117;35118;35119;35120;35121;35122;35123;35124;35125;35126;35127;35128;35129;35130;35131;35132;35133;35134;35135;35136;35137;35138;35139;35140;35141;35142;35143;35144;35145;35146;35147;35148;35149;35150;35151;35152;35153;35154;35155;35156;35157 21723;21724;21725;21726;21727;21728;21729;21730;21731;21732;21733;21734;21735;21736;21737;21738;21739;21740;21741;21742;21743;21744;21745;21746;21747;21748;21749;21750;21751;21752;21753;21754;21755 21733 30 APLYPDDILWNFEK Unmodified 1719.8508 0.85082315 123 P06610 btuE Vitamin B12 transport periplasmic protein BtuE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.284 52.836 2 6.6215E-08 26175 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 159.94 143.68 1419900000 228820000 198390000 235740000 0 0 0 143500000 115780000 94855000 0 0 0 56080000 50561000 57915000 0 0 0 84905000 78201000 75165000 0 0 0 1799 123 1734 35158;35159;35160;35161;35162;35163;35164;35165;35166;35167;35168;35169 21756;21757;21758;21759;21760;21761;21762;21763;21764 21757 6 APMILALANPEPEILPPLAK Unmodified 2097.1908 0.19078424 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 54.828 53.378 2;3 4.2692E-18 26234 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 170.18 170.09 1044600000 128390000 130840000 130390000 0 0 1804700 63201000 55040000 62568000 0 0 0 63329000 70331000 76537000 0 0 0 88815000 89902000 83443000 0 0 0 1800 1872 1735 35170;35171;35172;35173;35174;35175;35176;35177;35178;35179;35180;35181;35182;35183;35184;35185;35186;35187;35188;35189;35190;35191;35192;35193;35194 21765;21766;21767;21768;21769;21770;21771;21772;21773;21774;21775;21776;21777;21778;21779;21780;21781;21782;21783;21784;21785;21786;21787 21770 23 APMVMDR Unmodified 818.37788 0.37787951 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.816 15.593 2 0.16725 5314 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 42.474 22.912 632340000 57405000 62137000 50232000 0 0 0 63104000 64856000 56646000 0 0 0 58142000 45155000 40919000 0 0 0 45672000 42185000 45887000 0 0 0 1801 671 1736 35195;35196;35197;35198;35199;35200;35201;35202;35203;35204;35205;35206 21788 21788 1 APNEAVSSVR Unmodified 1028.5251 0.52507234 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.504 12.928 2 0.00025871 3082 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 115.86 98.013 72510000 0 0 0 0 0 0 14163000 10944000 11438000 6944800 7364200 6238400 0 0 0 0 0 2205700 7270400 0 0 2689900 1881700 1370600 1802 1877 1737 35207;35208;35209;35210;35211;35212;35213;35214;35215;35216;35217 21789;21790;21791;21792 21791 4 APNSPVAGR Unmodified 867.45626 0.45626449 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.24 12.073 2 4.5389E-06 3054 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 174.27 164.19 1419000000 75316000 63480000 74839000 0 0 0 136860000 153190000 145460000 0 0 0 157690000 149000000 130650000 0 0 0 114570000 101850000 116080000 0 0 0 1803 539 1738 35218;35219;35220;35221;35222;35223;35224;35225;35226;35227;35228;35229 21793;21794;21795;21796;21797;21798;21799;21800;21801;21802 21795 9 APNYSPADVAQCEK Unmodified 1548.6879 0.68785692 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.448 20.863 2 2.5149E-14 8411 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 184.58 179.08 189520000 13915000 14473000 11413000 0 0 0 20732000 19173000 21134000 0 0 0 11642000 11418000 11099000 0 0 0 21605000 17520000 15398000 0 0 0 1804 45 1739 35230;35231;35232;35233;35234;35235;35236;35237;35238;35239;35240;35241 21803;21804;21805;21806;21807;21808;21809;21810;21811;21812;21813;21814 21804 12 APQAEVLTPGYK Unmodified 1272.6714 0.67140222 1927 P77690 arnB UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.483 22.65 2 2.8557E-05 8002 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 116.23 112.08 55339000 6731100 6371000 6104200 1866800 2016400 1770600 0 4905200 4505200 4790900 4338800 3335300 1885400 0 1450500 0 0 0 2827700 0 2440000 0 0 0 1805 1927 1740 35242;35243;35244;35245;35246;35247;35248;35249;35250;35251;35252;35253;35254;35255;35256 21815;21816;21817;21818;21819 21816 5 APQILVLAPTR Unmodified 1177.7183 0.71829284 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.538 35.679 2 0.00017886 17150 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.21 100.54 206180000 24166000 23509000 21206000 965550 1307300 1180900 7305800 9660600 9205700 2476200 2855700 2402800 9939600 9198900 11503000 0 0 0 24214000 19394000 19987000 1675800 2066700 1959000 1806 544 1741 35257;35258;35259;35260;35261;35262;35263;35264;35265;35266;35267;35268;35269;35270;35271;35272;35273;35274;35275;35276;35277 21820;21821;21822 21821 3 APQNVDSALTQGPEMAR Unmodified 1783.8523 0.85229649 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.612 27.356 2 3.2052E-11 12668 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 194.3 191.8 70170000 13674000 9111100 9489900 0 0 0 4240500 5468600 4838900 0 0 0 3665500 5209600 4116900 0 0 0 4590500 5764400 0 0 0 0 1807 1006 1742 35278;35279;35280;35281;35282;35283;35284;35285;35286;35287;35288 21823;21824;21825 21823 3 APRPVDEPR Unmodified 1035.5461 0.54614213 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.861 11.615 2 0.0016699 2774 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 96.624 75.925 286560000 12334000 8287400 10267000 0 12833000 10797000 30721000 27150000 25046000 0 0 1055400 16370000 15023000 11262000 0 0 0 36231000 29225000 24799000 1549200 13609000 0 1808 595 1743 35289;35290;35291;35292;35293;35294;35295;35296;35297;35298;35299;35300;35301;35302;35303;35304;35305 21826;21827;21828;21829;21830;21831;21832;21833 21827 8 APSTYGGGLSVSSR Unmodified 1337.6575 0.65754307 12 CON__P08779 yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 20.692 20.246 2 0.057907 6385 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 43.544 43.544 10898000 0 0 0 0 0 0 0 0 0 3795300 4140500 2962100 0 0 0 0 0 0 0 0 0 0 0 0 + 1809 12 1744 35306;35307;35308 21834 21834 0 APTDGEQDR Unmodified 987.42575 0.42575222 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.5398 6.4057 2 4.3905E-11 1583 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 203.93 191.5 920850000 71237000 70815000 69109000 0 0 0 77066000 82464000 79412000 0 0 0 74322000 71389000 65967000 0 0 0 87992000 88875000 82201000 0 0 0 1810 170 1745 35309;35310;35311;35312;35313;35314;35315;35316;35317;35318;35319;35320 21835;21836;21837;21838;21839;21840;21841;21842;21843;21844;21845;21846 21842 12 APTGEPAAAAEMTK Unmodified 1343.6391 0.63911582 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.645 18.327 2 5.6926E-20 6932 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 219.92 217.76 1316100000 72719000 63938000 55732000 0 0 0 333290000 345400000 296090000 0 0 0 21530000 17023000 16437000 0 0 0 29214000 31703000 33022000 0 0 0 1811 1265 1746 35321;35322;35323;35324;35325;35326;35327;35328;35329;35330;35331;35332 21847;21848;21849;21850;21851;21852;21853;21854;21855;21856;21857;21858 21847 12 APTNELAVR Unmodified 969.52434 0.52434406 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 1 1 2 2 1 1 1 15.571 16.403 2 3.1513E-05 5296 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 153.78 126.07 473480000 6639100 8737100 7228300 202410 0 0 54960000 58764000 47733000 0 0 0 47386000 42143000 42833000 0 0 0 51608000 56488000 48760000 0 0 0 1812 1424 1747 35333;35334;35335;35336;35337;35338;35339;35340;35341;35342;35343;35344;35345;35346;35347;35348 21859;21860;21861;21862;21863 21863 5 APTPLWMK Unmodified 942.49971 0.49970921 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.607 29.106 2 0.005035 13487 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 87.284 81.625 2089700000 170640000 0 121640000 1388000 1354700 1658200 163100000 191900000 157400000 1521500 0 0 205090000 196780000 193300000 0 0 0 219210000 219960000 244750000 0 0 0 1813 161 1748 35349;35350;35351;35352;35353;35354;35355;35356;35357;35358;35359;35360;35361;35362;35363 21864;21865;21866;21867;21868;21869;21870;21871;21872;21873 21869 10 APTPSAAAEVVSR Unmodified 1254.6568 0.65681479 102 P04994 xseA Exodeoxyribonuclease 7 large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 20.613 21.01 2 1.3877E-05 8264 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.22 107.44 69536000 12449000 14750000 11290000 0 0 0 3178500 4540500 2671600 0 0 0 2926300 2186600 0 0 0 0 5107500 3957000 6478900 0 0 0 1814 102 1749 35364;35365;35366;35367;35368;35369;35370;35371;35372;35373;35374 21874;21875;21876 21874 3 APTPVDVIEGDIR Unmodified 1380.7249 0.72489436 1847 P76290 cmoA tRNA (cmo5U34)-methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.377 40.679 2 0.047243 20261 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 48.741 43.957 351660000 29595000 35250000 28463000 0 0 0 32963000 31042000 23649000 0 0 0 26628000 19526000 18710000 0 0 0 35224000 35960000 34647000 0 0 0 1815 1847 1750 35375;35376;35377;35378;35379;35380;35381;35382;35383;35384;35385;35386 21877 21877 0 APVAAPSQSVATGAVNEIHTSPYSK Unmodified 2481.25 0.24996669 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.827 27.348 3 1.3592E-40 12634 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 205.13 197.42 4134800000 480190000 430250000 363690000 2658100 3784300 3617900 305020000 378370000 327270000 5567700 3666000 3823400 230790000 254990000 227140000 0 0 0 367250000 418000000 310880000 5347400 6257800 6228900 1816 1503 1751 35387;35388;35389;35390;35391;35392;35393;35394;35395;35396;35397;35398;35399;35400;35401;35402;35403;35404;35405;35406;35407 21878;21879;21880;21881;21882;21883;21884;21885;21886;21887;21888;21889;21890 21881 13 APVAESFIWR Unmodified 1174.6135 0.61349341 621 P0AB03 ycbJ Uncharacterized protein YcbJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.166 38.38 2 1.6668E-05 18435 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.04 144.37 90120000 8489100 9123700 7374700 723740 0 341500 11753000 0 12393000 1510200 1410800 0 8312100 6519600 6543800 0 0 0 4391600 5853400 5379300 0 0 0 1817 621 1752 35408;35409;35410;35411;35412;35413;35414;35415;35416;35417;35418;35419;35420;35421;35422 21891;21892;21893;21894 21894 3 APVAGALLIWDK Unmodified 1252.718 0.71795849 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.194 45.805 2 2.1335E-05 21499 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 121.6 121.6 444400000 27921000 27764000 33769000 0 0 0 46609000 45903000 48265000 0 0 0 39714000 36813000 34848000 0 0 0 34961000 36994000 30840000 0 0 0 1818 880 1753 35423;35424;35425;35426;35427;35428;35429;35430;35431;35432;35433;35434 21895;21896;21897;21898;21899;21900;21901;21902;21903;21904;21905 21903 11 APVEDQAR Unmodified 884.43519 0.4351947 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.705 11.279 2 0.00019486 2627 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.15 142.33 981450000 0 0 0 20354000 22094000 18120000 97285000 80650000 94199000 26333000 26362000 25077000 76616000 60729000 55872000 6927400 5663700 4437000 99513000 101350000 103230000 18830000 18596000 19217000 1819 1427 1754 35435;35436;35437;35438;35439;35440;35441;35442;35443;35444;35445;35446;35447;35448;35449;35450;35451;35452;35453;35454;35455 21906;21907;21908;21909;21910;21911;21912;21913;21914;21915;21916;21917;21918;21919 21912 14 APVEQWSAGATGLGVR Unmodified 1597.8213 0.82125436 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.517 33.069 2 1.0385E-23 15605 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206.58 193.15 634500000 52213000 47027000 42817000 0 0 0 48780000 49931000 57198000 0 0 0 58074000 59243000 52761000 0 0 0 56364000 56605000 53487000 0 0 0 1820 1456 1755 35456;35457;35458;35459;35460;35461;35462;35463;35464;35465;35466;35467 21920;21921;21922;21923;21924;21925;21926;21927;21928;21929;21930 21928 11 APVFQSR Unmodified 803.42899 0.42898711 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.903 14.473 2 0.0014353 4507 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 130.05 119.07 899200000 0 0 0 15384000 14049000 14918000 82017000 80440000 75549000 30383000 30089000 25789000 72002000 62214000 59293000 4020600 3009000 3097800 91852000 89945000 95095000 18057000 16744000 15253000 1821 1427 1756 35468;35469;35470;35471;35472;35473;35474;35475;35476;35477;35478;35479;35480;35481;35482;35483;35484;35485;35486;35487;35488 21931;21932;21933;21934;21935;21936;21937;21938;21939;21940;21941;21942 21934 12 APVIFANEVATGLFGHLVGAIAGGSVYR Unmodified 2785.4915 0.49153437 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.516 54.043 3 1.9075E-31 26614 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 196.08 193.89 836310000 86685000 97632000 110510000 0 0 0 70215000 50922000 66680000 0 0 0 59788000 49769000 47048000 0 0 0 71056000 60847000 65156000 0 0 0 1822 948 1757 35489;35490;35491;35492;35493;35494;35495;35496;35497;35498;35499;35500 21943;21944;21945;21946;21947;21948;21949;21950;21951;21952;21953;21954 21951 12 APVILAVNK Unmodified 923.5804 0.58040237 125 P06616 era GTPase Era yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.744 23.657 2 2.9297E-05 9910 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 154.35 142.71 665310000 74382000 74400000 60679000 0 0 0 55639000 58595000 55770000 2605800 1649600 1927200 40278000 37484000 36631000 0 0 0 55133000 52742000 57392000 0 0 0 1823 125 1758 35501;35502;35503;35504;35505;35506;35507;35508;35509;35510;35511;35512;35513;35514;35515 21955;21956;21957;21958;21959;21960;21961 21960 7 APVIVFDDADIEAVVEGVR Unmodified 2013.0419 0.0418714 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 1 54.992 53.525 2;3 4.0451E-29 26319 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 262.43 250.26 710400000 223810000 225080000 216690000 0 0 0 7725900 8629400 0 0 0 0 0 4813000 0 0 0 0 14104000 0 9552300 0 0 0 1824 1925 1759 35516;35517;35518;35519;35520;35521;35522;35523;35524;35525;35526;35527 21962;21963;21964;21965;21966 21965 5 APVIVQFSNGGASFIAGK Unmodified 1761.9414 0.94136949 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 44.994 43.528 2;3 4.3776E-22 21178 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 227.57 224.35 1874200000 158150000 143030000 139230000 0 0 0 191730000 180100000 188940000 0 0 0 131770000 116900000 138590000 0 0 0 156340000 168680000 160720000 0 0 0 1825 634 1760 35528;35529;35530;35531;35532;35533;35534;35535;35536;35537;35538;35539;35540;35541;35542;35543;35544;35545;35546;35547;35548;35549;35550;35551 21967;21968;21969;21970;21971;21972;21973;21974;21975;21976;21977;21978;21979;21980;21981;21982;21983;21984;21985;21986;21987;21988;21989 21974 23 APVLSDSSCK Unmodified 1062.5016 0.5015597 5 CON__P00761 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.544 11.168 2 0.051644 2590 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 49.442 38.079 244980000 13335000 13616000 13716000 2195000 0 0 17220000 15588000 16819000 9136700 11092000 0 18960000 16048000 11506000 7715900 0 7489800 20983000 23888000 19979000 5693100 0 0 + 1826 5 1761 35552;35553;35554;35555;35556;35557;35558;35559;35560;35561;35562;35563;35564;35565;35566;35567;35568;35569 21990 21990 1 APVPVYAHVSMINGDDGK Unmodified 1868.9091 0.90908309 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 29.908 28.504 3 1.0189E-06 13196 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.035 80.255 256950000 20482000 16081000 19067000 0 0 0 26942000 21012000 26196000 0 0 0 25523000 0 0 0 0 0 32918000 31745000 36980000 0 0 0 1827 92 1762 35570;35571;35572;35573;35574;35575;35576;35577;35578;35579 21991 21991 1 APVPVYAHVSMINGDDGKK Unmodified 1997.004 0.0040461055 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 2 2 2 2 2 2 24.311 23.352 3;4 7.2639E-10 10641 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.82 97.263 1168400000 79164000 20330000 20654000 0 0 0 113720000 101350000 86437000 1104700 0 0 119880000 116250000 103850000 0 0 0 126170000 143640000 135850000 0 0 0 1828 92 1763 35580;35581;35582;35583;35584;35585;35586;35587;35588;35589;35590;35591;35592;35593;35594;35595;35596;35597;35598;35599;35600;35601;35602 21992;21993;21994;21995;21996;21997;21998;21999;22000;22001;22002;22003;22004 21992 13 APVQLLGR Unmodified 852.51814 0.51813647 1651 P62672 apaG Protein ApaG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.068 23.057 2 0.10075 8195 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 49.058 45.666 258510000 47559000 40125000 35615000 1053800 1181700 1058800 16386000 18251000 18057000 2535100 2260400 2317400 11752000 10969000 9590800 0 0 0 12582000 10379000 14622000 1384500 0 828870 1829 1651 1764 35603;35604;35605;35606;35607;35608;35609;35610;35611;35612;35613;35614;35615;35616;35617;35618;35619;35620;35621;35622 22005 22005 1 APVSVQNFVDYVNSGFYNNTTFHR Unmodified 2775.3041 0.30412753 952 P0AFL3 ppiA Peptidyl-prolyl cis-trans isomerase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.398 51.15 3 7.0834E-73 25138 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 292.64 290.16 1840800000 175580000 173620000 170140000 0 0 0 115600000 114170000 112160000 0 0 0 130120000 98989000 107580000 0 0 0 207360000 230580000 204890000 0 0 0 1830 952 1765 35623;35624;35625;35626;35627;35628;35629;35630;35631;35632;35633;35634 22006;22007;22008;22009;22010;22011;22012;22013;22014;22015;22016;22017 22012 12 APVTAGQLAVENGHYVVETLAR Unmodified 2294.2019 0.20189429 1158 P19624 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 40.515 38.899 3 5.2065E-10 18755 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 112.32 104.88 97240000 18834000 14132000 11715000 0 0 0 0 5553800 4136000 0 0 0 5617800 7402300 4329000 0 0 0 8877400 8587000 8056700 0 0 0 1831 1158 1766 35635;35636;35637;35638;35639;35640;35641;35642;35643;35644;35645 22018 22018 1 APVVTIMGHVDHGK Unmodified 1459.7606 0.76056836 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 3 2 1 1 18.168 18.551 2;3;4 1.2396E-14 6890 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 193.96 191.66 1759500000 166930000 178320000 165760000 18672000 17544000 17230000 86582000 86524000 90972000 53086000 58905000 49188000 105160000 93741000 91617000 56607000 67082000 49757000 93054000 92781000 92652000 12721000 7270500 7366600 1832 297 1767 35646;35647;35648;35649;35650;35651;35652;35653;35654;35655;35656;35657;35658;35659;35660;35661;35662;35663;35664;35665;35666;35667;35668;35669;35670;35671;35672;35673;35674;35675;35676;35677;35678;35679;35680;35681;35682;35683;35684;35685;35686;35687;35688;35689;35690;35691;35692;35693;35694;35695;35696;35697;35698;35699;35700;35701;35702;35703;35704;35705;35706;35707;35708;35709;35710 22019;22020;22021;22022;22023;22024;22025;22026;22027;22028;22029;22030;22031;22032;22033;22034;22035;22036;22037;22038;22039;22040;22041;22042;22043;22044;22045;22046;22047;22048;22049;22050;22051;22052;22053;22054 22043 31 APVVVPAGVDVK Unmodified 1149.6758 0.67575932 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 1 2 1 29.028 27.78 2;3 5.9831E-05 12663 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.63 123.63 11846000000 1496100000 1477400000 1391200000 42326000 46868000 42082000 509020000 570050000 527640000 80358000 86352000 79186000 658900000 636010000 704970000 73133000 41842000 39026000 1045900000 1038700000 994620000 94824000 79632000 89925000 1833 987 1768 35711;35712;35713;35714;35715;35716;35717;35718;35719;35720;35721;35722;35723;35724;35725;35726;35727;35728;35729;35730;35731;35732;35733;35734;35735;35736;35737;35738;35739;35740;35741;35742;35743;35744;35745;35746;35747;35748;35749;35750;35751;35752 22055;22056;22057;22058;22059;22060;22061;22062;22063;22064;22065;22066;22067;22068;22069;22070;22071;22072;22073;22074;22075;22076;22077;22078;22079 22076 25 APVYEAAQVTPLQK Unmodified 1513.814 0.81404372 98 P04968 ilvA L-threonine dehydratase biosynthetic IlvA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 1 1 28.725 27.579 2;3 2.9463E-14 12593 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 181.4 173.18 87507000 29816000 23216000 23215000 0 0 0 0 0 5855600 0 0 0 0 0 927690 0 0 0 4476600 0 0 0 0 0 1834 98 1769 35753;35754;35755;35756;35757;35758;35759;35760;35761 22080;22081;22082;22083;22084 22083 4 APWAMTSLK Unmodified 1003.5161 0.51608756 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.735 30.373 2 0.00013676 14635 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.08 123.14 1708900000 177600000 180570000 151460000 540890 0 662610 140500000 160370000 147150000 0 0 0 93495000 114960000 100050000 0 0 0 138780000 151690000 151040000 0 0 0 1835 94 1770 35762;35763;35764;35765;35766;35767;35768;35769;35770;35771;35772;35773;35774;35775 22085;22086;22087;22088;22089;22090;22091;22092;22093;22094;22095;22096 22086 12 APWFHHQEGK Unmodified 1235.5836 0.58359027 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 11.965 12.797 2;3 8.3028E-18 3587 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 246.37 234.09 1021500000 49618000 59040000 66433000 0 0 0 113880000 108650000 98796000 0 0 0 122210000 87659000 117160000 0 0 0 25140000 90553000 82350000 0 0 0 1836 213 1771 35776;35777;35778;35779;35780;35781;35782;35783;35784;35785;35786;35787;35788;35789;35790;35791;35792;35793;35794;35795;35796;35797;35798;35799 22097;22098;22099;22100;22101;22102;22103;22104;22105;22106;22107;22108;22109;22110;22111;22112;22113;22114;22115;22116;22117 22103 21 AQAAANIAQLTVNR Unmodified 1439.7845 0.78447492 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 28.221 26.954 2;3 1.8898E-19 9827 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 247.31 243.55 1059300000 48043000 55879000 49151000 11257000 11331000 11938000 75731000 78014000 74816000 48999000 53400000 50006000 48380000 5616100 47603000 9543200 7694800 6795200 87301000 106620000 102560000 21012000 25253000 22333000 1837 826 1772 35800;35801;35802;35803;35804;35805;35806;35807;35808;35809;35810;35811;35812;35813;35814;35815;35816;35817;35818;35819;35820;35821;35822;35823;35824;35825;35826;35827;35828;35829;35830;35831;35832;35833;35834;35835;35836;35837;35838;35839;35840;35841;35842;35843;35844;35845;35846 22118;22119;22120;22121;22122;22123;22124;22125;22126;22127;22128;22129;22130;22131;22132;22133;22134;22135;22136;22137;22138;22139;22140;22141;22142;22143;22144;22145;22146;22147;22148;22149;22150;22151 22133 33 AQAFEQDR Unmodified 963.44101 0.44100836 888 P0AEU7 skp Chaperone protein Skp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.02 12.606 2 3.9031E-12 3512 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.39 159.37 2922200000 0 263280000 233510000 9690600 10223000 8512300 281570000 289360000 287680000 55847000 55238000 53978000 273360000 202230000 0 38316000 29193000 30339000 266120000 212110000 209140000 36773000 35706000 40073000 1838 888 1773 35847;35848;35849;35850;35851;35852;35853;35854;35855;35856;35857;35858;35859;35860;35861;35862;35863;35864;35865;35866;35867;35868;35869;35870 22152;22153;22154;22155;22156;22157;22158;22159;22160;22161;22162;22163;22164;22165;22166;22167;22168;22169 22164 18 AQAGDFMSLCK Unmodified 1226.5424 0.54237866 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.808 28.452 2 0.098393 13117 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 42.001 31.587 569520000 42552000 42975000 36800000 0 0 0 50016000 49148000 44389000 0 0 0 44247000 51367000 43257000 0 0 0 59681000 51699000 53388000 0 0 0 1839 1332 1774 35871;35872;35873;35874;35875;35876;35877;35878;35879;35880;35881;35882 22170 22170 0 AQAGGVLTR Unmodified 871.48756 0.48756462 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 1 1 1 1 1 1 12.609 13.466 2 0.0001886 3999 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.56 52.456 1985200000 84731000 90246000 88531000 0 0 3398900 263520000 286430000 254630000 0 0 0 146960000 140490000 140930000 0 0 0 173080000 158520000 153730000 0 0 0 1840 348 1775 35883;35884;35885;35886;35887;35888;35889;35890;35891;35892;35893;35894;35895;35896 22171;22172;22173;22174;22175;22176;22177;22178 22174 7 AQALAAQGITVR Unmodified 1197.683 0.68296996 1523 P39315 qorB Quinone oxidoreductase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.077 22.347 2 2.6127E-05 9929 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.04 108.04 186230000 21626000 17567000 19371000 0 0 0 22263000 21010000 19551000 0 0 0 10423000 9782200 8550000 0 0 0 11390000 11910000 12788000 0 0 0 1841 1523 1776 35897;35898;35899;35900;35901;35902;35903;35904;35905;35906;35907;35908 22179;22180;22181;22182;22183;22184;22185;22186;22187;22188;22189;22190 22180 12 AQALWTR Unmodified 844.45554 0.45553621 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.191 20.485 2 0.0021192 8194 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 117.93 87.265 1721200000 143600000 138980000 126060000 4121200 2991900 2616100 162960000 147560000 143950000 2979200 2321100 0 129830000 119460000 94562000 0 0 0 169440000 165430000 162970000 0 0 1388100 1842 295 1777 35909;35910;35911;35912;35913;35914;35915;35916;35917;35918;35919;35920;35921;35922;35923;35924;35925;35926 22191;22192;22193;22194;22195;22196;22197;22198;22199;22200;22201;22202 22194 12 AQASTHGIGK Unmodified 968.50394 0.50394297 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 2 1 1 2 1 2 7.1789 8.0296 2 3.8873E-05 1161 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.02 133.87 6839300000 384910000 407120000 479990000 5198800 4061400 4030100 1626400000 1358400000 1416000000 0 0 0 144110000 165090000 198800000 215950 0 0 208600000 203690000 232570000 0 0 0 1843 321 1778 35927;35928;35929;35930;35931;35932;35933;35934;35935;35936;35937;35938;35939;35940;35941;35942;35943;35944;35945;35946;35947 22203;22204;22205;22206;22207;22208;22209;22210;22211;22212;22213;22214;22215;22216;22217;22218;22219;22220;22221;22222;22223 22205 21 AQATGFYGSLLPSPDVHGYK Unmodified 2107.0375 0.037454724 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 39.057 37.812 3 2.4987E-10 18474 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.957 90.748 334920000 117640000 101180000 103370000 0 0 0 0 0 4241000 0 0 0 0 0 0 0 1163300 1545800 3964000 0 0 1807400 0 0 1844 71 1779 35948;35949;35950;35951;35952;35953;35954;35955 22224;22225;22226 22224 3 AQAVGAADSLK Unmodified 1029.5455 0.54547343 1328 P29018 cydD ATP-binding/permease protein CydD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 13.947 14.51 2 0.1656 4688 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 35.178 14.479 63290000 0 39794000 0 2227300 1606400 1807900 5810100 5918400 0 0 2184400 1836600 0 0 0 1578000 526740 0 0 0 0 0 0 0 1845 1328 1780 35956;35957;35958;35959;35960;35961;35962;35963;35964;35965 22227 22227 1 AQCAINIESPNDK Unmodified 1458.6773 0.67729224 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.533 20.948 2 1.1451E-23 8287 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 226.29 226.29 179560000 16757000 14743000 9130100 0 0 0 12429000 17406000 19088000 0 0 0 14553000 13129000 13133000 0 0 0 17550000 14641000 16997000 0 0 0 1846 1482 1781 35966;35967;35968;35969;35970;35971;35972;35973;35974;35975;35976;35977 22228;22229;22230;22231;22232;22233;22234;22235;22236;22237 22232 10 AQCLAHDLPDPLEPLEIDGTLLPR Unmodified 2682.3687 0.36870162 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.111 52.696 3 2.9816E-05 25802 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.551 79.275 223830000 9508500 12939000 10564000 7002900 7261200 0 25556000 0 0 6963400 10015000 0 23244000 16634000 0 0 0 0 22687000 30161000 24478000 0 6184800 10632000 1847 324 1782 35978;35979;35980;35981;35982;35983;35984;35985;35986;35987;35988;35989;35990;35991;35992 22238;22239;22240;22241;22242;22243 22240 6 AQCLAVDANAR Unmodified 1187.5717 0.57170495 1780 P75825 hcp Hydroxylamine reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 15.599 16.374 2 0.0020647 5637 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 74.173 59.966 63735000 0 0 0 0 0 0 10168000 8363900 8202200 0 0 0 8537400 8638100 6623900 0 0 0 4087600 4147100 4453500 513540 0 0 1848 1780 1783 35993;35994;35995;35996;35997;35998;35999;36000;36001;36002 22244;22245;22246;22247;22248;22249;22250;22251;22252 22246 2 AQDGTPDWNIIER Unmodified 1513.7161 0.71612058 432 P0A8I1 yqgF Putative Holliday junction resolvase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.809 36.202 2 3.2369E-05 17633 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.48 102.91 69904000 11107000 7714900 6121000 1553900 1597000 1328600 0 0 7010500 0 0 0 4574000 3453900 4353900 0 0 0 7103900 7188800 6796200 0 0 0 1849 432 1784 36003;36004;36005;36006;36007;36008;36009;36010;36011;36012;36013;36014;36015 22253 22253 1 AQEILGCPVQVISGEEEAR Unmodified 2084.0208 0.020818382 1263 P25552 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.037 39.371 2 1.7778E-17 19525 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 169.04 163.66 64309000 9015600 8175600 7312400 0 0 0 3100500 3779900 3363400 0 0 0 3885900 3101800 3517200 0 0 0 5981000 5975500 7100700 0 0 0 1850 1263 1785 36016;36017;36018;36019;36020;36021;36022;36023;36024;36025;36026;36027 22254;22255;22256 22254 3 AQEIQQAYELIK Unmodified 1432.7562 0.75619449 1378 P31680 djlA DnaJ-like protein DjlA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.616 34.076 2 1.3358E-11 16381 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 182.64 172.41 109090000 0 5233400 5307900 0 843400 1020500 9579800 11393000 10717000 1703400 1677300 1999000 6294000 7994000 7500200 632290 397650 336120 10738000 10047000 11822000 2095800 0 1758900 1851 1378 1786 36028;36029;36030;36031;36032;36033;36034;36035;36036;36037;36038;36039;36040;36041;36042;36043;36044;36045;36046;36047;36048 22257;22258;22259;22260;22261 22258 4 AQELGIEVIDEAEMLR Unmodified 1814.9084 0.90841439 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.734 51.552 2 0.00011699 25203 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 104.7 93.595 188870000 14805000 16608000 12597000 0 0 0 13744000 15152000 14784000 0 0 0 14576000 15662000 11082000 0 2100500 3243400 17505000 17735000 19274000 0 0 0 1852 1102 1787 36049;36050;36051;36052;36053;36054;36055;36056;36057;36058;36059;36060;36061;36062 22262;22263 22262 1 AQESYWAGNSTR Unmodified 1368.6058 0.60584185 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.807 18.422 2 1.349E-08 6906 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 173.28 168.75 532650000 17865000 19066000 20060000 0 0 0 146240000 132780000 135080000 0 0 959070 8703800 7771800 7534000 0 0 0 13481000 11789000 11318000 0 0 0 1853 1265 1788 36063;36064;36065;36066;36067;36068;36069;36070;36071;36072;36073;36074;36075 22264;22265;22266;22267;22268;22269;22270 22265 7 AQEVLLDR Unmodified 942.51345 0.51344502 69 P02916 malF Maltose transport system permease protein MalF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 19.681 19.966 2 0.00081084 6347 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 122.18 38.562 396780000 4741700 5313800 0 2999800 2463600 2448900 30960000 37995000 30427000 10164000 8584200 6007200 32319000 39377000 27043000 3737400 2361700 2684700 43679000 51950000 41380000 0 5256500 4885000 1854 69 1789 36076;36077;36078;36079;36080;36081;36082;36083;36084;36085;36086;36087;36088;36089;36090;36091;36092;36093;36094;36095;36096;36097;36098 22271;22272;22273;22274;22275 22272 4 AQEVTADNNQQAASGAQPEQSK Unmodified 2271.0363 0.036345105 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 2 2 1 2 2 2 2 2 1 1 2 2 2 1 12.07 12.705 2;3 1.4028E-21 3422 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 168.47 167.79 172440000 4571200 0 0 0 0 0 21825000 16911000 8929800 7160400 6076500 5470800 14818000 10615000 6343400 0 0 1317400 22531000 22973000 21290000 0 0 1605800 1855 826 1790 36099;36100;36101;36102;36103;36104;36105;36106;36107;36108;36109;36110;36111;36112;36113;36114;36115;36116;36117;36118;36119;36120;36121;36122;36123 22276;22277;22278;22279 22279 4 AQEVTADNNQQAASGAQPEQSKS Unmodified 2358.0684 0.068373514 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 1 2 2 1 12.21 12.577 2;3 5.9473E-16 2853 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 155.16 155.16 104460000 0 0 0 6527600 2814500 4368200 0 0 0 20951000 18783000 18706000 0 0 0 2802000 2553400 3616500 0 0 0 8517600 7574000 7248100 1856 826 1791 36124;36125;36126;36127;36128;36129;36130;36131;36132;36133;36134;36135;36136;36137;36138;36139;36140;36141 22280;22281;22282;22283;22284;22285;22286;22287;22288;22289;22290 22287 11 AQEYTVEQLNHGR Unmodified 1543.7379 0.73791866 998 P0AG93 secF Protein translocase subunit SecF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 16.168 16.883 2;3 1.0052E-12 5923 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 197.27 189.04 245980000 10838000 12500000 12776000 4150700 2743000 2294600 5449800 4961100 5397600 0 4216000 2482100 15938000 16964000 15437000 0 0 0 43542000 39019000 42071000 2625100 2576000 0 1857 998 1792 36142;36143;36144;36145;36146;36147;36148;36149;36150;36151;36152;36153;36154;36155;36156;36157;36158;36159;36160;36161;36162;36163;36164;36165;36166 22291;22292;22293;22294;22295;22296 22294 6 AQFEEER Unmodified 907.40356 0.40356022 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.061 12.652 2 3.4717E-08 3307 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 164.89 134.28 12525000000 815030000 750730000 691110000 16173000 17273000 16592000 1166600000 1113700000 1056200000 26584000 22974000 19476000 0 975410000 852870000 17696000 14664000 14727000 1840700000 1608700000 1444800000 15473000 14420000 13431000 1858 267 1793 36167;36168;36169;36170;36171;36172;36173;36174;36175;36176;36177;36178;36179;36180;36181;36182;36183;36184;36185;36186;36187;36188;36189;36190 22297;22298;22299;22300;22301;22302;22303;22304;22305;22306;22307;22308;22309;22310;22311;22312;22313;22314;22315;22316;22317 22315 21 AQFGAAFPVVPGETGGR Unmodified 1659.8369 0.83690442 1578 P45748 tsaC Threonylcarbamoyl-AMP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 41.378 39.734 2 1.5669E-17 18680 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 154.28 148.68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1859 1578 1794 36191;36192;36193;36194;36195;36196;36197 22318;22319;22320;22321;22322;22323;22324 22322 7 AQFGGQR Unmodified 762.37729 0.37728589 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 2 1 11.184 11.734 2 0.00054414 2872 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.87 114.46 20574000000 0 213920000 192840000 19709000 26383000 19165000 259830000 236760000 164620000 1384500000 1131200000 1132500000 196210000 170740000 164860000 3823100000 4041400000 4356600000 3130500 0 0 1510400000 1526300000 0 1860 463 1795 36198;36199;36200;36201;36202;36203;36204;36205;36206;36207;36208;36209;36210;36211;36212;36213;36214;36215;36216;36217;36218;36219;36220;36221;36222;36223;36224;36225;36226;36227;36228 22325;22326;22327;22328;22329;22330;22331;22332;22333;22334;22335;22336;22337;22338;22339;22340;22341;22342;22343;22344 22337 20 AQFPDTPYIAR Unmodified 1277.6404 0.64043645 1179 P21367 ycaC Uncharacterized protein YcaC yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.664 31.196 2 5.6683E-05 14984 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.12 120.08 1624300000 391140000 362420000 350080000 0 0 475080 114620000 99821000 107800000 0 3981600 4053900 23896000 20784000 24261000 0 0 0 39343000 37535000 44116000 0 0 0 1861 1179 1796 36229;36230;36231;36232;36233;36234;36235;36236;36237;36238;36239;36240;36241;36242;36243 22345;22346;22347;22348;22349;22350;22351 22347 5 AQFTDAAIK Unmodified 963.50255 0.50254598 1008 P0AGD3 sodB Superoxide dismutase [Fe] yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.924 19.42 2 0.0062757 7294 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.501 53.653 6668500000 725290000 659250000 599470000 3850100 3382900 0 770410000 796070000 729170000 3887600 0 0 392620000 21050000 337350000 0 0 0 592450000 549800000 484460000 0 0 0 1862 1008 1797 36244;36245;36246;36247;36248;36249;36250;36251;36252;36253;36254;36255;36256;36257;36258 22352;22353 22353 1 AQFVYTMHR Unmodified 1151.5546 0.55459833 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 18.975 19.353 2;3 7.0997E-05 7175 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.61 115.6 378910000 23981000 23484000 20457000 4874100 4440800 4764900 49337000 57761000 15134000 4016000 3094400 3026100 16231000 19387000 14218000 0 0 0 67966000 19167000 17361000 3995300 3086300 3128800 1863 561 1798 36259;36260;36261;36262;36263;36264;36265;36266;36267;36268;36269;36270;36271;36272;36273;36274;36275;36276;36277;36278;36279;36280;36281;36282;36283;36284;36285;36286 22354;22355;22356 22356 2 AQFYQNLQNYLETELKR Unmodified 2157.0855 0.085467549 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 47.286 47.341 3 3.4035E-09 18065 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 126.88 122.44 70760000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17306000 25477000 27978000 0 0 0 0 0 0 1864 197 1799 36287;36288;36289 22357;22358;22359 22357 3 AQGEVVFK Unmodified 876.47052 0.47051757 842 P0AE91 creA Protein CreA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.776 17.276 2 0.079464 6111 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 53.554 31.852 183010000 25433000 23212000 20400000 1374700 2357700 0 19649000 16093000 16838000 4706900 4534400 0 0 10127000 0 1243000 775160 848090 11131000 11732000 12554000 0 0 0 1865 842 1800 36290;36291;36292;36293;36294;36295;36296;36297;36298;36299;36300;36301;36302;36303;36304;36305;36306 22360;22361 22361 2 AQGHIVAGQTPLYEIK Unmodified 1723.9257 0.92571943 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 2 2 2 1 2 2 25.962 24.805 2;3 5.6053E-09 11032 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 159.66 150.65 952300000 41673000 42466000 31881000 6455100 6701700 4965600 86193000 79880000 83063000 32010000 33015000 32857000 59178000 63491000 50945000 5265000 4078600 4529200 82895000 84408000 76605000 12587000 13845000 13311000 1866 210 1801 36307;36308;36309;36310;36311;36312;36313;36314;36315;36316;36317;36318;36319;36320;36321;36322;36323;36324;36325;36326;36327;36328;36329;36330;36331;36332;36333;36334;36335;36336;36337;36338;36339;36340;36341;36342;36343;36344;36345;36346 22362;22363;22364;22365;22366;22367;22368;22369;22370;22371;22372;22373;22374;22375;22376;22377;22378;22379;22380;22381;22382;22383;22384;22385;22386 22380 25 AQGIELPAVVPAGLDNPMGHHAIR Unmodified 2462.2852 0.28524676 1795 P75954 ycfS Probable L,D-transpeptidase YcfS yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 40.864 39.331 4 0.0038734 19238 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 49.25 45.788 23660000 0 0 0 0 0 0 0 0 0 0 0 0 5466300 0 4125900 0 0 0 14068000 0 0 0 0 0 1867 1795 1802 36347;36348;36349 22387 22387 1 AQGIEVLLDDR Unmodified 1227.6459 0.64591575 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.853 37.58 2 1.221E-05 17647 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 144.77 119.52 1271400000 96284000 0 98157000 0 0 0 136690000 118790000 119950000 0 0 0 138420000 141610000 129110000 1451400 806420 988600 0 148200000 140890000 0 0 0 1868 1120 1803 36350;36351;36352;36353;36354;36355;36356;36357;36358;36359;36360;36361;36362 22388;22389;22390;22391;22392;22393;22394;22395;22396;22397 22395 10 AQGIEVLLDDRK Unmodified 1355.7409 0.74087877 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 29.798 28.407 2;3 1.4819E-05 13114 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 132.25 96.981 1960300000 121790000 106820000 113400000 0 1248300 1463300 180080000 175070000 179240000 2819700 2703300 0 151710000 157710000 147110000 0 0 0 206600000 215150000 197410000 0 0 0 1869 1120 1804 36363;36364;36365;36366;36367;36368;36369;36370;36371;36372;36373;36374;36375;36376;36377;36378;36379;36380;36381;36382;36383;36384;36385;36386;36387;36388;36389;36390 22398;22399;22400;22401;22402;22403;22404;22405;22406;22407;22408;22409;22410;22411;22412;22413;22414;22415;22416;22417;22418;22419;22420;22421;22422 22409 25 AQGIQDEQVLNALAAVPR Unmodified 1892.0116 0.011574324 323 P0A7A5 pcm Protein-L-isoaspartate O-methyltransferase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 48.38 47.146 2 0.00016804 22889 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.89 96.81 23162000 0 0 15836000 0 0 0 0 0 0 0 0 0 0 3867400 3458500 0 0 0 0 0 0 0 0 0 1870 323 1805 36391;36392;36393 22423 22423 1 AQGLDLTIPVDK Unmodified 1268.6976 0.69761697 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.651 36.749 2 0.0008329 14817 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 79.693 77.159 92109000 0 7442200 0 834100 950820 1206400 7303900 7969900 8088900 7508000 6342100 5419600 4266100 5029500 3625000 0 0 0 7367700 6360100 4922800 2903300 2077000 2491500 1871 1877 1806 36394;36395;36396;36397;36398;36399;36400;36401;36402;36403;36404;36405;36406;36407;36408;36409;36410;36411;36412 22424;22425;22426 22424 3 AQGNMPAYGYTPPYTDGAK Oxidation (M) 2016.8887 0.88874158 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 3 3 2 1 1 1 1 1 1 1 26.879 25.789 2;3 2.5482E-22 11911 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 186.13 183 251250000 71117000 69528000 59548000 0 0 0 12200000 8218500 7754100 0 0 0 8223200 5350000 4890800 0 0 0 0 3046900 1375100 0 0 0 1872 1217 1807 36413;36414;36415;36416;36417;36418;36419;36420;36421;36422;36423;36424;36425;36426;36427;36428;36429 22427;22428;22429;22430;22431;22432;22433;22434;22435;22436;22437;22438;22439;22440 22431 507 14 AQGNMPAYGYTPPYTDGAK Unmodified 2000.8938 0.89382695 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 2 2 2 2 2 2 2 2 2 31.361 30.007 2;3 2.5386E-17 13403 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 176.87 164.71 9396000000 3061000000 2424300000 2303700000 4144200 3649800 3549100 196260000 188920000 201310000 0 0 0 141560000 143310000 129130000 0 0 0 208920000 197880000 188450000 0 0 0 1873 1217 1807 36430;36431;36432;36433;36434;36435;36436;36437;36438;36439;36440;36441;36442;36443;36444;36445;36446;36447;36448;36449;36450;36451;36452;36453;36454;36455;36456;36457;36458;36459 22441;22442;22443;22444;22445;22446;22447;22448;22449;22450;22451;22452;22453;22454;22455;22456;22457;22458;22459;22460;22461;22462;22463;22464;22465;22466;22467;22468;22469;22470;22471;22472 22471 32 AQGTLYIVSAPSGAGK Unmodified 1518.8042 0.80420731 1622 P60546 gmk Guanylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.93 28.574 2 2.7298E-08 13241 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 158.25 133.46 627920000 48413000 56288000 43038000 0 0 0 57410000 47620000 54914000 0 0 0 44574000 40839000 44539000 0 0 0 62048000 62842000 65398000 0 0 0 1874 1622 1808 36460;36461;36462;36463;36464;36465;36466;36467;36468;36469;36470;36471 22473;22474;22475;22476;22477;22478;22479;22480;22481;22482;22483;22484 22478 12 AQGVQLTAK Unmodified 914.51853 0.5185304 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 13.351 13.95 2 0.00063648 3631 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 105.14 75.329 1248300000 34794000 31803000 31177000 49514000 58253000 50037000 37267000 39332000 35493000 111660000 105690000 103550000 55661000 57503000 44528000 22475000 17486000 19204000 55659000 55895000 68417000 54547000 57119000 51239000 1875 480 1809 36472;36473;36474;36475;36476;36477;36478;36479;36480;36481;36482;36483;36484;36485;36486;36487;36488;36489;36490;36491;36492;36493;36494;36495;36496;36497;36498;36499 22485;22486;22487;22488;22489;22490;22491;22492;22493;22494;22495;22496;22497;22498;22499;22500 22489 15 AQHPEILLFYR Unmodified 1385.7456 0.74557022 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.711 35.088 3 8.1604E-05 16939 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.937 88.714 215550000 13741000 13609000 14246000 0 1012300 877790 18308000 20764000 20390000 0 0 0 16425000 17954000 12994000 0 0 0 21957000 20854000 20966000 0 0 1449100 1876 1230 1810 36500;36501;36502;36503;36504;36505;36506;36507;36508;36509;36510;36511;36512;36513;36514 22501;22502 22501 2 AQHSALDDIPR Unmodified 1221.6102 0.61019895 896 P0AEY3 mazG Nucleoside triphosphate pyrophosphohydrolase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 1 2 1 2 2 2 18.689 19.235 2;3 0.00026133 7243 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 111.06 104.95 205660000 11932000 15803000 13017000 0 0 0 24316000 23076000 22052000 0 0 0 7080500 18164000 5921000 0 0 0 22575000 22974000 18751000 0 0 0 1877 896 1811 36515;36516;36517;36518;36519;36520;36521;36522;36523;36524;36525;36526;36527;36528;36529;36530;36531;36532;36533;36534;36535;36536 22503;22504;22505;22506;22507 22505 4 AQHSLIHR Unmodified 960.52535 0.52534711 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 10.384 11.222 2 0.00061948 2527 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.28 94.921 377420000 0 95964000 86027000 0 0 0 0 0 0 0 0 0 102960000 92470000 0 0 0 0 0 0 0 0 0 0 1878 1816 1812 36537;36538;36539;36540 22508 22508 1 AQIAELQSFVSR Unmodified 1347.7147 0.71466402 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.309 36.45 2 2.1219E-08 16986 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 194.54 179.39 440520000 35508000 33768000 25936000 1313800 1000900 966400 32331000 39274000 37545000 1048500 1395400 1038300 38086000 31696000 36435000 0 0 0 44550000 38197000 36942000 1268400 1068500 1152200 1879 558 1813 36541;36542;36543;36544;36545;36546;36547;36548;36549;36550;36551;36552;36553;36554;36555;36556;36557;36558;36559;36560;36561 22509;22510;22511;22512;22513 22512 5 AQIAHFFEHYK Unmodified 1389.683 0.68296996 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 21.706 21.728 2;3 2.7592E-07 9222 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 160.53 154.57 3658700000 230950000 215580000 178490000 0 0 762690 353730000 297780000 324590000 0 1258200 0 332850000 316650000 322140000 0 0 0 336330000 377300000 370330000 0 0 0 1880 325 1814 36562;36563;36564;36565;36566;36567;36568;36569;36570;36571;36572;36573;36574;36575;36576;36577;36578;36579;36580;36581;36582;36583;36584;36585;36586;36587 22514;22515;22516;22517;22518;22519;22520;22521;22522;22523;22524;22525;22526;22527;22528;22529;22530;22531;22532;22533;22534;22535;22536 22515 23 AQIAHFFEHYKDLEK Unmodified 1874.9315 0.93153309 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 4 4 2 1 3 4 4 4 2 1 1 5 4 4 4 4 4 1 1 27.153 25.904 2;3;4;5 9.3095E-15 11690 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 186.13 172.99 2621300000 163330000 158950000 160290000 3709100 1581700 5150900 231860000 250430000 235850000 3739800 1793900 2366100 208050000 177040000 184650000 0 0 0 273800000 286780000 268620000 1525800 1781800 0 1881 325 1815 36588;36589;36590;36591;36592;36593;36594;36595;36596;36597;36598;36599;36600;36601;36602;36603;36604;36605;36606;36607;36608;36609;36610;36611;36612;36613;36614;36615;36616;36617;36618;36619;36620;36621;36622;36623;36624;36625;36626;36627;36628;36629;36630;36631;36632;36633;36634;36635;36636;36637;36638;36639;36640;36641;36642;36643;36644;36645;36646;36647;36648 22537;22538;22539;22540;22541;22542;22543;22544;22545;22546;22547;22548;22549;22550;22551;22552;22553;22554;22555;22556;22557;22558;22559;22560;22561;22562;22563;22564;22565;22566;22567;22568;22569 22556 33 AQIEPLHAMVK Unmodified 1235.6696 0.66962808 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 2 2 2 1 2 1 1 2 2 21.642 21.57 2;3 0.00026607 6458 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 96.034 92.624 985250000 67356000 77721000 62190000 1450700 1778900 1927000 98432000 84539000 101830000 4817700 4566000 2078700 43779000 51768000 40302000 26380000 25524000 18462000 67573000 120790000 73609000 1313900 3637500 3426700 1882 37 1816 36649;36650;36651;36652;36653;36654;36655;36656;36657;36658;36659;36660;36661;36662;36663;36664;36665;36666;36667;36668;36669;36670;36671;36672;36673;36674;36675;36676;36677;36678;36679;36680;36681;36682;36683;36684;36685;36686 22570;22571;22572;22573;22574;22575;22576;22577;22578;22579;22580;22581;22582;22583;22584;22585;22586;22587;22588;22589;22590;22591 22571 21 AQIFNFSSGPAMLPAEVLK Unmodified 2019.0499 0.049933666 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 1 1 2 2 1 54.219 52.827 2;3 1.6505E-22 26220 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 189.1 183.25 1961400000 341970000 314050000 283650000 24822000 26506000 39931000 106950000 98813000 87216000 14583000 13303000 16182000 79150000 96686000 82456000 0 0 1686400 97031000 108600000 108530000 0 19270000 0 1883 1211 1817 36687;36688;36689;36690;36691;36692;36693;36694;36695;36696;36697;36698;36699;36700;36701;36702;36703;36704;36705;36706;36707;36708;36709;36710;36711;36712;36713;36714;36715;36716;36717;36718;36719;36720 22592;22593;22594;22595;22596;22597;22598;22599;22600;22601;22602;22603;22604;22605;22606;22607;22608;22609;22610;22611;22612;22613 22595 21 AQIIQQAGNSVLAK Unmodified 1439.8096 0.80962704 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 25.766 24.738 2 2.729E-14 10963 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 183 153.45 333440000 111750000 100950000 94915000 9057600 7747700 9016000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1884 96 1818 36721;36722;36723;36724;36725;36726 22614;22615;22616 22615 3 AQIVGMNVGTLK Unmodified 1229.6802 0.68019277 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 32.48 30.627 2 6.3349E-05 10430 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 104.22 53.155 122600000 0 0 0 4485800 6258500 4789000 0 0 0 6713200 4186500 4546800 0 0 0 0 0 0 82859000 0 0 4046900 0 4715900 1885 1302 1819 36727;36728;36729;36730;36731;36732;36733;36734;36735 22617;22618;22619;22620;22621 22621 5 AQKPVEK Unmodified 798.45995 0.45995289 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.5894 8.9869 2 0.0024094 1508 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 130.77 101.43 206440000 52117000 47783000 38935000 0 0 0 0 0 0 11652000 10831000 11581000 0 0 0 9053300 3644300 2842700 1937600 1896500 2110000 4697500 3962800 3395200 1886 1576 1820 36736;36737;36738;36739;36740;36741;36742;36743;36744;36745;36746;36747;36748;36749;36750;36751 22622;22623;22624;22625;22626;22627;22628;22629 22623 8 AQLAFEGFDSK Unmodified 1211.5823 0.58225287 1329 P29131 ftsN Cell division protein FtsN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.835 33.141 2 0.05426 12940 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 59.426 41.114 93154000 7101200 8947200 8793100 895440 1516800 1220600 6124900 5722700 4823300 1953900 2089400 1781100 4663800 0 8956000 0 0 0 9364500 10057000 8021900 0 1121000 0 1887 1329 1821 36752;36753;36754;36755;36756;36757;36758;36759;36760;36761;36762;36763;36764;36765;36766;36767;36768;36769 22630;22631;22632 22631 0 AQLAIYDYIK Unmodified 1196.6441 0.64412484 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.222 40.402 2 0.0032788 16280 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 73.985 69.445 92077000 16858000 14392000 13132000 1132800 1269800 1784700 9646200 7990200 8097900 0 3296100 2148900 3390700 4844700 4094400 0 0 0 0 0 0 0 0 0 1888 326 1822 36770;36771;36772;36773;36774;36775;36776;36777;36778;36779;36780;36781;36782;36783 22633;22634;22635;22636;22637;22638;22639;22640;22641;22642 22633 2 AQLEQGR Unmodified 800.41407 0.41406533 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 2 10.624 10.989 2 5.4251E-08 2051 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 160.77 114.11 6465500000 0 0 0 0 0 0 24417000 0 0 831610000 750940000 713380000 36020000 34278000 36519000 659170000 894060000 882150000 56802000 46238000 41228000 564560000 484910000 409240000 1889 1616 1823 36784;36785;36786;36787;36788;36789;36790;36791;36792;36793;36794;36795;36796;36797;36798;36799;36800;36801;36802;36803;36804;36805 22643;22644;22645;22646;22647;22648;22649 22648 6 AQLEQGRDR Unmodified 1071.5421 0.54211939 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 10.489 10.611 2;3 7.1931E-10 1897 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 203.02 173.92 3710300000 0 0 0 0 0 0 0 0 0 374660000 360920000 352520000 0 0 0 444560000 681850000 667020000 0 0 0 279190000 278620000 270990000 1890 1616 1824 36806;36807;36808;36809;36810;36811;36812;36813;36814;36815;36816;36817;36818;36819;36820;36821;36822;36823 22650;22651;22652;22653;22654;22655;22656;22657;22658;22659;22660;22661;22662;22663;22664 22663 15 AQLETVDSAPVQALR Unmodified 1596.8471 0.84713476 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.114 30.535 2 6.9123E-27 14767 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 229.16 219.5 264760000 17584000 16001000 18405000 768850 823240 0 24950000 27330000 18946000 1989600 1798700 1427400 15277000 16412000 16398000 0 0 0 26537000 29157000 28556000 1236500 1160300 0 1891 1230 1825 36824;36825;36826;36827;36828;36829;36830;36831;36832;36833;36834;36835;36836;36837;36838;36839;36840;36841;36842 22665;22666;22667;22668;22669;22670;22671;22672;22673;22674;22675 22665 11 AQLGSNSTMK Unmodified 1035.5019 0.50189405 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.714 12.504 2 0.0002121 3379 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.15 110.24 869410000 180350000 187880000 201100000 610250 788560 818850 0 0 0 0 0 0 26337000 22102000 23202000 0 0 0 80168000 72110000 64467000 2303400 3901900 3274400 1892 65 1826 36843;36844;36845;36846;36847;36848;36849;36850;36851;36852;36853;36854;36855;36856;36857 22676;22677;22678;22679;22680;22681;22682 22677 7 AQLGSNSTMK Oxidation (M) 1051.4968 0.49680868 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 1 0 By MS/MS 1 10.381 11.033 2 0.057028 2598 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.949 45.562 17959000 17959000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1893 65 1826 36858 22683 22683 1 AQLLAAIDALK Unmodified 1125.6758 0.67575932 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.398 42.883 2 0.0012409 21227 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 81.338 58.598 373980000 38845000 37303000 34482000 0 0 0 47651000 46300000 44545000 0 0 0 19040000 13902000 16059000 0 0 0 27064000 24392000 24398000 0 0 0 1894 1282 1827 36859;36860;36861;36862;36863;36864;36865;36866;36867;36868;36869;36870 22684;22685;22686;22687;22688;22689;22690;22691;22692;22693;22694;22695 22686 12 AQLLAAIDALKR Unmodified 1281.7769 0.77687035 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.936 35.136 3 3.4881E-05 17435 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.93 83.564 150240000 19786000 17310000 13102000 0 0 0 18230000 14388000 17677000 1467100 1815900 1017200 4619000 5266500 4957500 0 0 0 12774000 7647000 10187000 0 0 0 1895 1282 1828 36871;36872;36873;36874;36875;36876;36877;36878;36879;36880;36881;36882;36883;36884;36885 22696;22697;22698;22699;22700;22701;22702;22703;22704;22705;22706 22696 11 AQLLADLADLDVLSTEDLK Unmodified 2042.0783 0.078316486 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 1 1 55.221 53.755 2;3 7.2321E-14 25510 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 192.4 189.37 1786200000 130320000 134880000 114630000 5798200 4560800 0 123900000 126390000 115030000 11554000 10258000 4552500 148900000 143050000 152820000 0 0 0 174570000 163230000 183190000 15254000 12397000 10946000 1896 651 1829 36886;36887;36888;36889;36890;36891;36892;36893;36894;36895;36896;36897;36898;36899;36900;36901;36902;36903;36904;36905;36906;36907;36908;36909;36910;36911;36912;36913;36914;36915;36916;36917;36918;36919;36920;36921 22707;22708;22709;22710;22711;22712;22713;22714;22715;22716 22714 9 AQLLSQIQQQR Unmodified 1311.7259 0.72589741 1978 Q47710 yqjK Uncharacterized protein YqjK yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.885 23.775 2 3.1383E-14 10456 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 210.37 180.12 348350000 13328000 14161000 12350000 5311200 4709600 4495700 63362000 62570000 55374000 12556000 13639000 10663000 7652200 5637200 6121700 0 0 0 16024000 11567000 15982000 4068200 4457300 4321500 1897 1978 1830 36922;36923;36924;36925;36926;36927;36928;36929;36930;36931;36932;36933;36934;36935;36936;36937;36938;36939;36940;36941;36942 22717;22718;22719;22720;22721;22722;22723;22724;22725;22726;22727;22728 22722 9 AQLQEIAQTK Unmodified 1128.6139 0.61388734 350 P0A7J7 rplK 50S ribosomal protein L11 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.163 17.652 2 2.1371E-12 6434 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 213.98 153.39 8949900000 958190000 988280000 831960000 62833000 45689000 30188000 555720000 481930000 507010000 99653000 87462000 72168000 498280000 432400000 430850000 68573000 41177000 46268000 837030000 854790000 812920000 71280000 66241000 69003000 1898 350 1831 36943;36944;36945;36946;36947;36948;36949;36950;36951;36952;36953;36954;36955;36956;36957;36958;36959;36960;36961;36962;36963;36964;36965;36966 22729;22730;22731;22732;22733;22734;22735;22736;22737;22738;22739;22740;22741;22742;22743;22744;22745;22746;22747;22748;22749 22733 20 AQLSQETR Unmodified 931.47231 0.47230849 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS 1 10.741 11.497 2 0.0035665 2772 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.296 80.373 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1899 709 1832 36967 22750 22750 1 AQLYAFDPALEGLR Unmodified 1562.8093 0.80929269 1238 P24188 yceA UPF0176 protein YceA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 47.874 46.579 2 4.8868E-06 22779 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 144.17 126.74 96732000 4855200 4197300 0 0 0 0 0 0 0 0 0 0 7764800 9059500 9181400 0 0 0 15668000 19774000 26231000 0 0 0 1900 1238 1833 36968;36969;36970;36971;36972;36973;36974;36975 22751;22752;22753;22754 22751 4 AQMCSPEEMPHDVVTMNSR Unmodified 2217.9275 0.9275284 966 P0AFW4 rnk Regulator of nucleoside diphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 27.908 26.799 2;3 4.9054E-14 12537 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.11 139.11 586760000 27951000 25912000 23485000 0 0 0 32404000 39976000 39811000 0 0 0 73047000 54480000 51162000 0 0 0 67246000 73161000 78126000 0 0 0 1901 966 1834 36976;36977;36978;36979;36980;36981;36982;36983;36984;36985;36986;36987;36988;36989;36990;36991;36992;36993 22755;22756;22757;22758;22759;22760;22761;22762;22763;22764;22765;22766 22756 12 AQMDGLEGYPVYTR Unmodified 1598.7399 0.73989249 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 2 1 1 2 2 2 35.302 33.507 2;3 3.0136E-06 16003 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.68 115.08 878410000 43455000 32178000 32880000 13696000 14607000 13164000 34455000 31028000 31130000 32874000 26883000 23137000 34579000 27274000 29423000 0 0 0 112290000 114660000 101550000 41890000 41783000 45475000 1902 215 1835 36994;36995;36996;36997;36998;36999;37000;37001;37002;37003;37004;37005;37006;37007;37008;37009;37010;37011;37012;37013;37014;37015;37016;37017;37018;37019;37020;37021;37022;37023 22767;22768;22769;22770;22771;22772;22773;22774;22775;22776;22777;22778;22779;22780;22781 22774 7 AQNAQVAAGQLGGTPPVK Unmodified 1705.9111 0.911132 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 1 1 2 2 2 2 2 1 1 2 2 2 1 1 1 22.61 22.052 2;3 9.876E-37 9690 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 240.37 237.58 271400000 13357000 8164400 12791000 2700800 0 0 23042000 22545000 22569000 7437600 5840800 7380700 14709000 19991000 17421000 2812600 1059200 877740 26831000 30116000 28466000 0 0 3284000 1903 1365 1836 37024;37025;37026;37027;37028;37029;37030;37031;37032;37033;37034;37035;37036;37037;37038;37039;37040;37041;37042;37043;37044;37045;37046;37047;37048;37049;37050;37051;37052;37053;37054;37055;37056;37057;37058 22782;22783;22784;22785;22786;22787;22788;22789;22790;22791;22792;22793;22794;22795;22796;22797;22798;22799 22785 17 AQNECGCGESFGV Unmodified 1413.5289 0.52891344 1924 P77667 sufA Protein SufA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.308 27.931 2 2.1634E-05 13188 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.57 108.18 98431000 9868000 8371900 8522400 696530 748100 620130 12295000 12634000 14940000 1771700 0 0 4380600 5183100 3522200 0 0 0 5743400 3593200 5541100 0 0 0 1904 1924 1837 37059;37060;37061;37062;37063;37064;37065;37066;37067;37068;37069;37070;37071;37072;37073;37074 22800;22801;22802 22801 3 AQNFEAVAQYQFDFGLRPSLAYLQSK Unmodified 2990.4927 0.49265658 144 P06996 ompC Outer membrane protein C yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 2 2 1 1 1 1 1 1 2 1 1 1 1 1 52.85 51.544 3;4 5.3142E-23 18700 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 177.41 175.16 335440000 11593000 12576000 0 34540000 32427000 29022000 12041000 14602000 9412200 10912000 9896800 92362000 0 0 0 0 4441200 0 8174800 11147000 0 5386100 0 36903000 1905 144 1838 37075;37076;37077;37078;37079;37080;37081;37082;37083;37084;37085;37086;37087;37088;37089;37090;37091;37092;37093 22803;22804;22805;22806;22807;22808;22809;22810 22806 8 AQNLNVHLIGR Unmodified 1233.6942 0.69420335 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.085 21.982 3 0.00014218 9107 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 90.108 89.203 441360000 35731000 35247000 27980000 0 0 0 40429000 42314000 39213000 0 0 0 23069000 19676000 23609000 0 0 0 43799000 52225000 58066000 0 0 0 1906 1203 1839 37094;37095;37096;37097;37098;37099;37100;37101;37102;37103;37104;37105 22811;22812;22813;22814;22815;22816;22817;22818;22819;22820 22814 10 AQNVIVFK Unmodified 917.53345 0.53345218 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.735 23.666 2 0.0072677 9872 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 83.614 78.79 688700000 0 0 0 0 0 0 108240000 101430000 86000000 18625000 16608000 0 55779000 48147000 48255000 2446200 0 0 56763000 59119000 62178000 8773500 8149300 8184400 1907 633 1840 37106;37107;37108;37109;37110;37111;37112;37113;37114;37115;37116;37117;37118;37119;37120 22821;22822;22823;22824;22825;22826;22827;22828;22829 22828 9 AQNVIVFKR Unmodified 1073.6346 0.63456321 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 17.547 17.812 3 0.053094 5191 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 31.454 25.673 24672000 0 0 0 2356400 1879200 825320 0 0 0 3833600 3738800 3942100 0 0 0 0 1303700 0 0 0 0 2532400 2380800 1879400 1908 633 1841 37121;37122;37123;37124;37125;37126;37127;37128;37129;37130 22830;22831;22832 22830 3 AQPAAIIR Unmodified 838.50249 0.5024864 693 P0AC19 folX D-erythro-7,8-dihydroneopterin triphosphate epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.687 16.506 2 0.003416 5827 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.319 83.079 770840000 89858000 97191000 76194000 315450 436610 339040 74511000 81798000 63079000 0 0 0 0 0 54807000 0 0 0 77408000 85025000 69880000 0 0 0 1909 693 1842 37131;37132;37133;37134;37135;37136;37137;37138;37139;37140;37141;37142;37143 22833;22834;22835;22836;22837 22835 4 AQPDWSIALLR Unmodified 1268.6877 0.68772099 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 2 1 2 2 2 1 1 1 2 1 1 43.405 41.935 2;3 0.00014047 22484 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 133.23 130.23 223940000 42761000 40823000 32814000 0 0 0 30575000 24756000 29423000 0 0 0 3137900 2800400 3094600 0 0 0 5035300 4884900 3829200 0 0 0 1910 202 1843 37144;37145;37146;37147;37148;37149;37150;37151;37152;37153;37154;37155;37156;37157;37158;37159;37160 22838;22839;22840 22840 3 AQPEAEVVAQPEPVVEETPEPVAIER Unmodified 2812.4131 0.41306886 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.53 39.674 3 6.2036E-05 16015 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 73.865 70.823 304890000 25715000 24089000 20235000 0 0 0 24202000 24386000 29148000 5635400 3778000 3950600 20434000 17911000 14987000 0 0 0 36363000 28778000 25276000 0 0 0 1911 1052 1844 37161;37162;37163;37164;37165;37166;37167;37168;37169;37170;37171;37172;37173;37174;37175 22841;22842;22843;22844 22841 3 AQPEWEALPAIER Unmodified 1508.7623 0.7623425 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 1 1 40.949 39.212 2;3 9.1111E-06 19076 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.97 135.67 6103900000 1359100000 1356800000 1295100000 3347900 2116800 0 194510000 186020000 190800000 0 1194100 0 157050000 143510000 150440000 0 0 0 357270000 361700000 339770000 1920500 1695700 1579400 1912 1264 1845 37176;37177;37178;37179;37180;37181;37182;37183;37184;37185;37186;37187;37188;37189;37190;37191;37192;37193;37194;37195;37196;37197;37198;37199;37200;37201;37202;37203;37204;37205;37206 22845;22846;22847;22848;22849;22850;22851;22852;22853;22854;22855;22856;22857;22858;22859;22860;22861;22862;22863;22864;22865;22866;22867;22868;22869;22870 22850 26 AQPFAKPVANQR Unmodified 1325.7204 0.7204181 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 12.626 13.205 2;3 5.2003E-08 3297 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 164.57 135.84 612040000 15004000 0 0 1149300 1186200 0 40124000 33747000 23734000 99989000 49741000 85508000 14171000 16011000 16636000 14231000 12974000 13656000 30663000 30676000 29945000 31646000 25455000 25796000 1913 30 1846 37207;37208;37209;37210;37211;37212;37213;37214;37215;37216;37217;37218;37219;37220;37221;37222;37223;37224;37225;37226;37227;37228;37229;37230;37231;37232;37233;37234;37235;37236;37237;37238;37239;37240;37241;37242 22871;22872;22873;22874;22875;22876;22877;22878;22879;22880;22881;22882;22883;22884;22885;22886;22887;22888;22889;22890 22876 20 AQPSLEAIAALKPDLIIADSSR Unmodified 2278.2533 0.25326116 1099 P15028 fecB Fe(3+) dicitrate-binding periplasmic protein yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.092 49.833 3 7.7837E-07 24100 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 101.94 93.85 319140000 29909000 26041000 24098000 731310 998200 0 13659000 19701000 13603000 0 0 0 11434000 14296000 13167000 0 0 0 51198000 52491000 47813000 0 0 0 1914 1099 1847 37243;37244;37245;37246;37247;37248;37249;37250;37251;37252;37253;37254;37255;37256 22891;22892;22893;22894;22895 22893 5 AQQAMQLMQESNYTDALPLLK Unmodified 2392.1767 0.1766671 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.128 50.88 2;3 2.0974E-34 25145 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 261.27 248.16 1032300000 100670000 93564000 81567000 0 0 0 78612000 84251000 93261000 0 0 0 86154000 75868000 86745000 0 0 0 83087000 82421000 86112000 0 0 0 1915 1903 1848 37257;37258;37259;37260;37261;37262;37263;37264;37265;37266;37267;37268;37269;37270;37271;37272;37273;37274;37275;37276;37277;37278;37279;37280 22896;22897;22898;22899;22900;22901;22902;22903;22904;22905;22906;22907;22908;22909;22910;22911;22912;22913;22914;22915;22916;22917;22918;22919 22899 24 AQQATLLGFPHYAAWK Unmodified 1800.9311 0.93113916 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 1 2 2 1 2 1 2 2 2 40.189 38.646 2;3 2.1061E-13 18570 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 162.68 157.37 829430000 127250000 139390000 128270000 0 0 0 11366000 11152000 85301000 0 0 0 40696000 6417300 48243000 0 0 3375600 73849000 77120000 76999000 0 0 0 1916 1233 1849 37281;37282;37283;37284;37285;37286;37287;37288;37289;37290;37291;37292;37293;37294;37295;37296;37297;37298;37299;37300;37301;37302 22920;22921;22922;22923;22924;22925;22926 22926 7 AQQIELASSVIR Unmodified 1313.7303 0.73031409 1724 P68739 nfi Endonuclease V yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 31.269 30.448 2 2.2573E-05 10589 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 120.68 95.907 11180000 0 0 0 471050 0 0 0 0 0 0 0 0 0 0 0 3082500 2383700 2613500 0 0 0 0 1307000 1322100 1917 1724 1850 37303;37304;37305;37306;37307;37308 22927;22928 22927 2 AQQIVDATDK Unmodified 1087.551 0.55095274 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.763 13.628 2 1.717E-06 3831 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 161.92 140.07 12837000000 762720000 736110000 771170000 0 815490 0 1335900000 1306600000 1253500000 0 0 0 1129400000 1000900000 961330000 0 0 0 1272600000 1136500000 1169400000 0 0 0 1918 402 1851 37309;37310;37311;37312;37313;37314;37315;37316;37317;37318;37319;37320;37321 22929;22930;22931;22932;22933;22934;22935;22936;22937;22938;22939;22940 22940 10 AQQLTLTAPEMTALVGGMR Unmodified 1987.0231 0.023066988 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 1 1 51.358 50.109 2;3 2.9334E-29 24396 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 249.66 226.77 2264200000 287830000 255650000 230630000 0 0 2867600 270230000 266710000 274800000 0 0 0 138480000 123990000 129430000 0 0 0 123910000 81816000 77874000 0 0 0 1919 1086 1852 37322;37323;37324;37325;37326;37327;37328;37329;37330;37331;37332;37333;37334;37335;37336;37337;37338;37339;37340;37341;37342;37343;37344;37345 22941;22942;22943;22944;22945;22946;22947;22948;22949;22950;22951;22952;22953;22954;22955 22944 14 AQQPPIR Unmodified 808.45554 0.45553621 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.664 12.453 2 0.0038447 3339 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.29 81.287 2902700000 272970000 233400000 242150000 1569700 0 1683500 224610000 210480000 220360000 0 0 1906600 245000000 235930000 202700000 0 0 0 257570000 268570000 282780000 0 1015500 0 1920 183 1853 37346;37347;37348;37349;37350;37351;37352;37353;37354;37355;37356;37357;37358;37359;37360;37361 22956;22957;22958;22959;22960;22961;22962;22963;22964;22965;22966 22956 11 AQQSPYSAAMAEQR Unmodified 1536.6991 0.69909031 406 P0A881 trpR Trp operon repressor yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 19.496 19.94 2 5.0398E-08 7606 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 144.1 134.31 83805000 18320000 14435000 14801000 1120700 0 0 3539500 3366700 4340900 0 0 0 6041600 3985800 4314700 427620 0 0 0 5119800 3991400 0 0 0 1921 406 1854 37362;37363;37364;37365;37366;37367;37368;37369;37370;37371;37372;37373;37374 22967;22968;22969;22970 22970 3 AQQSWNEK Unmodified 989.45666 0.45665842 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.32 12.152 2 0.031055 3159 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 72.789 65.099 439080000 108140000 98654000 79240000 0 0 0 26743000 34406000 30662000 0 0 0 10918000 7975300 10210000 0 0 0 11435000 8656000 12045000 0 0 0 1922 1423 1855 37375;37376;37377;37378;37379;37380;37381;37382;37383;37384;37385;37386 22971 22971 0 AQQTPLYEQHTLCGAR Unmodified 1871.8948 0.89483001 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 19.526 20.007 2;3 4.3413E-31 8008 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 277.11 275.67 6179400000 413990000 404050000 406730000 0 0 0 547080000 556200000 599120000 0 0 0 519740000 509770000 470110000 0 0 0 605010000 556520000 591070000 0 0 0 1923 1294 1856 37387;37388;37389;37390;37391;37392;37393;37394;37395;37396;37397;37398;37399;37400;37401;37402;37403;37404;37405;37406;37407;37408;37409;37410 22972;22973;22974;22975;22976;22977;22978;22979;22980;22981;22982;22983;22984;22985;22986;22987;22988;22989;22990;22991;22992;22993;22994;22995 22973 24 AQQYQQQLGQK Unmodified 1318.663 0.6629628 1051 P10100 rlpA Rare lipoprotein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.486 13.201 2 0.00020729 3215 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 103.56 99.112 111590000 15917000 12268000 12087000 0 1437300 1647400 5094800 6627200 7244600 2734600 1971300 1777600 7584300 6507700 0 0 0 0 10773000 8520400 7505500 1897300 0 0 1924 1051 1857 37411;37412;37413;37414;37415;37416;37417;37418;37419;37420;37421;37422;37423;37424;37425;37426;37427 22996 22996 1 AQSHAILTSSATVLADDPALTVR Unmodified 2336.2336 0.23358835 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 38.525 36.947 3 1.158E-11 17919 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.47 125.65 204300000 21408000 13025000 18534000 0 0 0 0 19870000 0 0 0 0 17434000 17616000 18010000 0 0 0 31431000 29055000 17911000 0 0 0 1925 1262 1858 37428;37429;37430;37431;37432;37433;37434;37435;37436;37437 22997;22998;22999;23000;23001;23002 22999 6 AQSLASR Unmodified 731.3926 0.3926016 304 P0A729 yceF Maf-like protein YceF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 10.389 11.148 2 0.0015191 2494 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.57 14.543 253850000 0 53469000 54440000 0 0 0 34116000 46035000 35367000 0 0 0 0 0 0 0 0 0 30421000 0 0 0 0 0 1926 304 1859 37438;37439;37440;37441;37442;37443;37444 23003;23004;23005 23003 3 AQSLDALSSMANIAGYR Unmodified 1766.8621 0.8621329 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 47.969 46.41 2;3 5.4784E-25 18531 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 223.31 216.42 501480000 0 0 0 9263800 8045500 4535200 58733000 61852000 53318000 17288000 20363000 27453000 33981000 32634000 30939000 0 0 0 48288000 41297000 36240000 3526000 8019100 5700400 1927 146 1860 37445;37446;37447;37448;37449;37450;37451;37452;37453;37454;37455;37456;37457;37458;37459;37460;37461;37462;37463;37464;37465;37466;37467;37468;37469;37470;37471;37472;37473;37474;37475;37476 23006;23007;23008;23009;23010;23011;23012;23013;23014;23015;23016;23017;23018;23019;23020;23021;23022;23023;23024;23025 23009 18 AQSVTLDYK Unmodified 1023.5237 0.52367535 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.181 19.511 2 0.00069751 6236 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 103.56 94.8 1005000000 63944000 63079000 62483000 7617200 7653500 6417300 56331000 58704000 46094000 13943000 12895000 13494000 52283000 48572000 39970000 38739000 25030000 27391000 70579000 66503000 77294000 52358000 47259000 46372000 1928 1633 1861 37477;37478;37479;37480;37481;37482;37483;37484;37485;37486;37487;37488;37489;37490;37491;37492;37493;37494;37495;37496;37497;37498;37499;37500 23026;23027;23028;23029;23030;23031;23032;23033;23034;23035;23036;23037;23038;23039;23040;23041;23042;23043;23044;23045;23046;23047 23027 20 AQSVVDYLISK Unmodified 1221.6605 0.66050319 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.47 38.858 2 0.00016745 15484 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 108.67 106.38 4957400000 280470000 272660000 244510000 31353000 35751000 27587000 220280000 211830000 212430000 43837000 41459000 41121000 372000000 383670000 340540000 29253000 23458000 25205000 624140000 691670000 699500000 37830000 34304000 32521000 1929 480 1862 37501;37502;37503;37504;37505;37506;37507;37508;37509;37510;37511;37512;37513;37514;37515;37516;37517;37518;37519;37520;37521;37522;37523;37524 23048;23049;23050;23051;23052;23053;23054;23055;23056;23057;23058;23059;23060;23061;23062;23063;23064;23065;23066;23067;23068;23069;23070;23071 23052 24 AQTATTESK Unmodified 935.45599 0.45598972 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 5.3158 6.1251 2 0.0038222 889 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 80.219 52.694 45191000 5178000 6870900 7555300 0 0 0 6152700 6944800 5438000 0 0 0 0 0 0 0 0 0 0 7051700 0 0 0 0 1930 1167 1863 37525;37526;37527;37528;37529;37530;37531 23072;23073;23074 23072 2 AQTDEVLENPDPR Unmodified 1482.6951 0.69505079 979 P0AG18 purE N5-carboxyaminoimidazole ribonucleotide mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 21.316 21.643 2 1.3407E-06 8525 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.3 125.41 247630000 67713000 69499000 57168000 0 0 0 3221700 5101100 3674300 0 0 0 9153600 0 7304200 0 0 0 11458000 13334000 0 0 0 0 1931 979 1864 37532;37533;37534;37535;37536;37537;37538;37539;37540;37541 23075;23076;23077;23078;23079 23078 2 AQTFTLVAK Unmodified 977.55458 0.55458155 400 P0A862 tpx Thiol peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.968 23.966 2 0.0029513 10979 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 83.313 62.614 16144000000 1675600000 1646100000 1407800000 6078800 8238400 7947800 1298700000 1456900000 1258300000 0 2634800 0 1100400000 1093800000 1000500000 0 0 2125200 1423800000 1428300000 1323800000 0 2721800 0 1932 400 1865 37542;37543;37544;37545;37546;37547;37548;37549;37550;37551;37552;37553;37554;37555;37556;37557;37558;37559 23080;23081;23082;23083;23084;23085;23086;23087;23088;23089;23090;23091;23092;23093;23094 23080 15 AQTILEAQGEVAR Unmodified 1384.731 0.73104237 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 1 2 1 1 2 1 2 2 2 1 2 1 2 1 1 1 24.064 23.146 2 2.5933E-24 9590 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 243.53 206.84 678060000 21513000 20522000 14419000 18508000 17351000 18257000 51400000 52730000 52951000 25925000 17392000 21316000 32981000 37389000 39869000 0 2793000 2251500 55422000 63011000 60389000 17971000 14312000 19391000 1933 649 1866 37560;37561;37562;37563;37564;37565;37566;37567;37568;37569;37570;37571;37572;37573;37574;37575;37576;37577;37578;37579;37580;37581;37582;37583;37584;37585;37586;37587;37588;37589;37590;37591 23095;23096;23097;23098;23099;23100;23101;23102;23103;23104;23105;23106;23107;23108;23109;23110;23111;23112;23113;23114;23115;23116 23115 19 AQTISFEDFITYK Unmodified 1561.7664 0.76642482 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 50.687 49.365 2 2.9579E-07 24411 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 151.15 131.39 1792400000 172990000 145380000 125290000 974660 0 0 136200000 146250000 0 0 0 0 185460000 165620000 151960000 0 0 0 190210000 191780000 178630000 0 0 1601700 1934 680 1867 37592;37593;37594;37595;37596;37597;37598;37599;37600;37601;37602;37603;37604 23117;23118;23119;23120;23121;23122;23123;23124;23125;23126 23118 10 AQTISFEDFITYKGEQGAK Unmodified 2132.0426 0.042599681 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 42.542 40.715 3 0.13561 14463 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 23.447 19.727 10416000 0 0 0 2236400 3273900 2373200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2532600 0 0 1935 680 1868 37605;37606;37607;37608 23127 23127 1 AQTKTEEFDAIK Unmodified 1379.6933 0.69325988 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 15.788 16.076 2;3 5.0763E-06 4422 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 138.63 105.25 3737900000 0 0 0 2637000 2642200 2557200 0 0 0 257400000 221500000 221120000 0 0 0 648390000 613670000 614830000 0 0 0 376640000 392860000 383690000 1936 458 1869 37609;37610;37611;37612;37613;37614;37615;37616;37617;37618;37619;37620;37621;37622;37623;37624;37625;37626;37627;37628;37629;37630;37631;37632 23128;23129;23130;23131;23132;23133;23134;23135;23136;23137;23138;23139;23140;23141;23142;23143;23144;23145 23141 18 AQTLWDELSR Unmodified 1217.6041 0.60405094 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 41.105 39.488 2 8.7686E-05 19213 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.62 122.92 334720000 37582000 37086000 32827000 0 0 0 0 21840000 27762000 0 0 0 29036000 26619000 25972000 0 0 0 35328000 32513000 28158000 0 0 0 1937 1550 1870 37633;37634;37635;37636;37637;37638;37639;37640;37641;37642;37643 23146;23147;23148;23149;23150;23151 23149 5 AQTTAENIINTLVIQ Unmodified 1627.8781 0.87810054 851 P0AEE1 dcrB Protein DcrB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.869 53.425 2 1.4808E-07 21726 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 162.36 153.63 365950000 9542100 8624400 6921500 5925500 3646800 5011500 28203000 18057000 22540000 22209000 22926000 26147000 20552000 19789000 19955000 0 0 0 33706000 31220000 35493000 8182200 6429300 10867000 1938 851 1871 37644;37645;37646;37647;37648;37649;37650;37651;37652;37653;37654;37655;37656;37657;37658;37659;37660;37661;37662;37663;37664 23152;23153;23154 23152 3 AQVAELAR Unmodified 856.47667 0.47666558 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 14.38 15.171 2 0.0016144 4817 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 117.93 43.511 465380000 0 101320000 84542000 178950 0 553150 18155000 21361000 93515000 0 0 0 0 0 0 0 0 0 3037600 0 142720000 0 0 0 1939 299 1872 37665;37666;37667;37668;37669;37670;37671;37672;37673 23155;23156 23155 1 AQVAIITASDSGIGK Unmodified 1429.7777 0.77765821 1422 P33368 yohF Uncharacterized oxidoreductase YohF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 30.185 28.607 2 2.7306E-15 13269 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 195.68 193.52 181360000 34209000 37586000 36409000 0 0 0 21100000 15694000 20223000 1118900 776920 1170600 2169400 0 2256800 0 0 0 0 5227500 3419600 0 0 0 1940 1422 1873 37674;37675;37676;37677;37678;37679;37680;37681;37682;37683;37684;37685;37686 23157;23158;23159;23160;23161;23162;23163;23164;23165 23164 6 AQVAINDGNPDEAER Unmodified 1597.7332 0.73322721 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.062 17.497 2 1.2039E-15 5156 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 199.82 198.07 123510000 0 0 0 0 0 0 12910000 12719000 10444000 12063000 10066000 4134700 4571800 6079300 4250400 3058600 1747500 1646200 13715000 12827000 13282000 0 0 0 1941 143 1874 37687;37688;37689;37690;37691;37692;37693;37694;37695;37696;37697;37698;37699;37700;37701 23166;23167;23168 23166 3 AQVALAWLLSK Unmodified 1198.7074 0.7073938 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.807 49.484 2 0.001696 24513 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.379 76.119 212190000 30298000 37415000 28993000 0 0 0 23771000 16906000 14650000 0 0 0 10643000 7409300 7882400 0 0 0 12331000 12115000 9773500 0 0 0 1942 1934 1875 37702;37703;37704;37705;37706;37707;37708;37709;37710;37711;37712;37713 23169;23170;23171;23172;23173;23174 23169 2 AQVAQIAGK Unmodified 884.50797 0.50796571 779 P0ADB1 osmE Osmotically-inducible lipoprotein E yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.478 13.247 2 0.0038193 3861 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 80.229 47.619 884880000 126810000 110820000 113820000 3548000 2695800 3113900 128890000 114150000 100320000 9121300 8138100 6856400 18515000 11432000 10630000 0 0 0 40023000 42632000 33364000 0 0 0 1943 779 1876 37714;37715;37716;37717;37718;37719;37720;37721;37722;37723;37724;37725;37726;37727;37728;37729;37730;37731 23175;23176;23177;23178 23175 3 AQVAQIAGKPSSEVSMIHAR Unmodified 2079.0895 0.089507069 779 P0ADB1 osmE Osmotically-inducible lipoprotein E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 2 3 3 2 3 3 2 2 2 2 1 1 2 2 2 2 2 2 20.996 21.128 2;3;4 3.8116E-37 6866 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 236.4 235.73 5117300000 482050000 472180000 460030000 199380000 173430000 254780000 382360000 453720000 437750000 276800000 307100000 317860000 63910000 48790000 56548000 11047000 8192400 7983200 189490000 184130000 171920000 54587000 62752000 40528000 1944 779 1877 37732;37733;37734;37735;37736;37737;37738;37739;37740;37741;37742;37743;37744;37745;37746;37747;37748;37749;37750;37751;37752;37753;37754;37755;37756;37757;37758;37759;37760;37761;37762;37763;37764;37765;37766;37767;37768;37769;37770;37771;37772;37773;37774;37775;37776;37777;37778;37779;37780;37781;37782;37783;37784;37785;37786;37787 23179;23180;23181;23182;23183;23184;23185;23186;23187;23188;23189;23190;23191;23192;23193;23194;23195;23196;23197;23198;23199;23200;23201;23202;23203;23204;23205;23206;23207;23208;23209;23210;23211;23212;23213;23214;23215;23216;23217;23218;23219;23220;23221;23222;23223;23224;23225;23226;23227;23228;23229 23188 51 AQVFTDSLNPAPLEALAGR Unmodified 1969.0269 0.026890038 1385 P32099 lplA Lipoate-protein ligase A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.613 50.365 2 9.4487E-37 24861 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 234.66 225.61 222080000 18088000 22766000 14878000 0 0 0 15034000 16662000 18160000 0 0 0 21539000 18458000 18815000 0 0 0 17647000 19145000 20888000 0 0 0 1945 1385 1878 37788;37789;37790;37791;37792;37793;37794;37795;37796;37797;37798;37799 23230;23231;23232;23233;23234;23235;23236;23237 23231 6 AQVGTMPVGSK Unmodified 1073.5539 0.55392963 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 15.574 16.114 2 0.00021901 4192 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 102.06 92.099 2460400000 140280000 141770000 144030000 17775000 14429000 15779000 183330000 204950000 174270000 73226000 62815000 75570000 175150000 152470000 136310000 12812000 6761100 7971900 202620000 190940000 186590000 48490000 47228000 44847000 1946 1044 1879 37800;37801;37802;37803;37804;37805;37806;37807;37808;37809;37810;37811;37812;37813;37814;37815;37816;37817;37818;37819;37820;37821;37822;37823;37824 23238;23239;23240;23241;23242;23243;23244;23245;23246;23247;23248;23249;23250;23251;23252;23253;23254;23255;23256;23257;23258 23239 20 AQVINTNSLSLITQNNINK Unmodified 2084.1226 0.12258134 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 2 2 1 41.131 39.685 2;3 1.6574E-30 19488 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 289.38 288.81 167540000 54309000 50763000 39852000 6424200 7659100 6134200 0 0 0 0 0 0 0 0 0 0 2395400 0 0 0 0 0 0 0 1947 96 1880 37825;37826;37827;37828;37829;37830;37831;37832;37833;37834;37835;37836;37837 23259;23260;23261;23262;23263;23264;23265 23260 7 AQVLALLEK Unmodified 983.60153 0.60153174 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.08 34.523 2 0.0076292 16511 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 66.692 48.546 352060000 26478000 24447000 25411000 0 0 0 31138000 25794000 21162000 0 0 0 21017000 26874000 25100000 0 0 0 33571000 47907000 43163000 0 0 0 1948 849 1881 37838;37839;37840;37841;37842;37843;37844;37845;37846;37847;37848;37849 23266 23266 1 AQVQAAFEEIAR Unmodified 1331.6834 0.68336389 602 P0AAN1 hybE Hydrogenase-2 operon protein HybE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.402 31.631 2 5.8717E-07 15015 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.04 145.06 191200000 0 0 0 0 0 0 20809000 18825000 20503000 3959900 4809600 6250000 14028000 16196000 14112000 0 0 0 20505000 24454000 20324000 2134000 2059400 2229600 1949 602 1882 37850;37851;37852;37853;37854;37855;37856;37857;37858;37859;37860;37861;37862;37863;37864 23267;23268;23269;23270;23271;23272;23273;23274;23275 23272 5 AQVRPLAVGVHNDR Unmodified 1530.8379 0.83790748 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.192 13.907 3 5.7925E-05 4282 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.135 73.154 168590000 24343000 23252000 17670000 0 0 0 16673000 19903000 12625000 869350 606410 0 8340000 0 7860700 0 0 0 9655800 10963000 15830000 0 0 0 1950 35 1883 37865;37866;37867;37868;37869;37870;37871;37872;37873;37874;37875;37876;37877 23276;23277;23278;23279 23279 3 AQVTAMDAGQR Unmodified 1146.5452 0.54515585 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.166 14.059 2 1.8595E-07 4306 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 131.22 120.81 300040000 42658000 37566000 41587000 0 0 0 0 0 31632000 0 0 0 26089000 24475000 21230000 0 0 0 22476000 26211000 26119000 0 0 0 1951 1774 1884 37878;37879;37880;37881;37882;37883;37884;37885;37886;37887;37888;37889 23280;23281;23282;23283;23284;23285;23286;23287 23281 8 AQVYALNTSDGTVAWQTK Unmodified 1951.964 0.96395543 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 36.962 35.14 2;3 0.00022178 13749 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 92.939 79.277 59616000 0 0 0 668710 647980 0 0 0 0 6254000 4385400 4142100 2661900 2717200 2942700 3366000 0 0 9617600 7778900 5551700 2783300 2711400 3386800 1952 1940 1885 37890;37891;37892;37893;37894;37895;37896;37897;37898;37899;37900;37901;37902;37903;37904;37905;37906;37907;37908;37909;37910;37911;37912;37913 23288;23289;23290 23290 0 AQYDTVLANEVTAR Unmodified 1549.7736 0.77363546 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.215 30.912 2 1.5976E-14 14480 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 191.33 183.33 112090000 0 0 0 0 0 0 4633200 3832400 5591200 7838100 9289100 6852500 8735700 6605200 7997200 4642800 2582600 2797500 15063000 13434000 12193000 0 0 0 1953 73 1886 37914;37915;37916;37917;37918;37919;37920;37921;37922;37923;37924;37925;37926;37927;37928 23291;23292;23293;23294;23295 23295 5 AQYEEIANR Unmodified 1092.52 0.51998696 14 CON__P13647 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 2 1 1 2 1 1 1 14.848 15.389 2 0.00048604 3836 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 109.01 51.835 52446000 1187000 0 0 3322100 4078700 3816000 4429600 0 0 0 1712600 20538000 0 0 0 7080300 4660900 0 0 0 1620700 0 0 0 + 1954 14 1887 37929;37930;37931;37932;37933;37934;37935;37936;37937;37938;37939;37940 23296;23297;23298 23297 3 AQYEEIAQR Unmodified 1106.5356 0.53563702 17;8;3;15 CON__P35908;CON__P48668;CON__P02538;CON__P04259;CON__ENSEMBL:ENSBTAP00000038253;CON__P19013 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 15.86 15.949 2 4.5389E-06 4279 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 174.27 171.59 215870000 0 0 0 0 0 0 0 0 0 28067000 20825000 18562000 0 0 0 17549000 13690000 12554000 0 0 0 38441000 34917000 31262000 + 1955 17;8;3;15 1888 37941;37942;37943;37944;37945;37946;37947;37948;37949 23299;23300;23301;23302;23303;23304;23305;23306;23307;23308 23308 10 AQYLIDQLLAEAR Unmodified 1502.8093 0.80929269 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 4 4 5 3 4 3 3 3 3 3 3 3 3 3 3 3 3 3 4 4 4 52.192 50.922 1;2;3 2.8561E-40 25469 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 283.82 278.51 64512000000 1415800000 1368100000 1297600000 9119000000 6561300000 8011200000 1696300000 1555800000 1567400000 560450000 569250000 653910000 1204600000 1037700000 1025800000 415530000 547170000 598310000 1859000000 1543500000 1809400000 6693300000 6941300000 6460100000 1956 939 1889 37950;37951;37952;37953;37954;37955;37956;37957;37958;37959;37960;37961;37962;37963;37964;37965;37966;37967;37968;37969;37970;37971;37972;37973;37974;37975;37976;37977;37978;37979;37980;37981;37982;37983;37984;37985;37986;37987;37988;37989;37990;37991;37992;37993;37994;37995;37996;37997;37998;37999;38000;38001;38002;38003;38004;38005;38006;38007;38008;38009;38010;38011;38012;38013;38014;38015;38016;38017;38018;38019;38020;38021;38022;38023;38024;38025;38026;38027;38028;38029;38030 23309;23310;23311;23312;23313;23314;23315;23316;23317;23318;23319;23320;23321;23322;23323;23324;23325;23326;23327;23328;23329;23330;23331;23332;23333;23334;23335;23336;23337;23338;23339;23340;23341;23342;23343;23344;23345;23346;23347;23348;23349;23350;23351;23352;23353;23354;23355;23356;23357;23358;23359;23360;23361;23362;23363;23364;23365;23366;23367;23368;23369;23370;23371;23372;23373;23374;23375;23376;23377;23378;23379;23380;23381;23382;23383;23384;23385;23386;23387 23325 79 AQYLIDQLLAEARK Unmodified 1630.9043 0.90425571 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 2 2 2 46.71 45.003 2;3 4.2819E-06 16090 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 134.13 119.97 170900000 0 0 0 41387000 37296000 44757000 0 0 0 1546300 0 0 0 0 0 0 0 0 0 0 0 13613000 17862000 14443000 1957 939 1890 38031;38032;38033;38034;38035;38036;38037;38038;38039;38040;38041;38042;38043 23388;23389;23390;23391;23392;23393 23390 6 AQYSIAGMTSGVVVGTDHAAEAITGFFTK Unmodified 2928.4328 0.43275844 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 54.561 53.123 3 1.1209E-11 26255 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 130.32 124.35 593090000 84656000 79022000 76667000 0 0 0 0 74951000 75036000 0 0 0 28171000 30273000 0 0 0 0 48688000 47493000 48134000 0 0 0 1958 1154 1891 38044;38045;38046;38047;38048;38049;38050;38051;38052;38053 23394;23395;23396;23397;23398 23395 5 AQYTSMAK Unmodified 898.42185 0.42185282 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.09 12.733 2 0.014735 2858 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 71.342 63.929 270780000 0 6927000 7950900 3287400 4046800 4784800 14773000 23401000 12920000 10154000 8889700 7718900 25828000 15451000 16428000 2948700 0 2460900 24887000 30028000 25542000 6475600 8460900 7415800 1959 1267 1892 38054;38055;38056;38057;38058;38059;38060;38061;38062;38063;38064;38065;38066;38067;38068;38069;38070;38071;38072;38073;38074;38075 23399;23400;23401 23401 3 AQYVLAEQVTR Unmodified 1276.6776 0.67755023 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.961 24.83 2 1.3012E-10 11464 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 196.32 183.69 2487700000 199740000 190030000 165090000 1905100 0 0 225100000 201710000 218820000 0 0 1137200 209080000 194940000 201700000 0 0 0 219130000 247230000 212060000 0 0 0 1960 1024 1893 38076;38077;38078;38079;38080;38081;38082;38083;38084;38085;38086;38087;38088;38089 23402;23403;23404;23405;23406;23407;23408;23409;23410;23411;23412;23413;23414;23415 23402 13 AQYVVTR Unmodified 835.4552 0.45520186 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.315 13.901 2 1.0445E-05 3452 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 185.22 155.89 7212400000 89818000 85046000 0 3332800 3361800 3966400 148220000 140530000 144400000 16618000 15988000 14791000 106520000 108460000 90806000 2357200000 1547100000 2002700000 147060000 0 148850000 13318000 12697000 11490000 1961 36 1894 38090;38091;38092;38093;38094;38095;38096;38097;38098;38099;38100;38101;38102;38103;38104;38105;38106;38107;38108;38109;38110;38111;38112 23416;23417;23418;23419;23420;23421;23422;23423;23424;23425;23426;23427;23428;23429;23430;23431;23432 23416 15 ARAEVEVDAK Unmodified 1086.5669 0.56693715 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 2 2 2 1 1 2 1 2 11.454 11.947 2;3 0.001719 2507 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 72.2 62.196 137380000 0 0 0 4990700 4679800 4604400 2951100 0 4765500 30647000 27213000 21831000 0 0 0 0 1763000 1673500 0 0 0 12784000 6108400 13371000 1962 882 1895 38113;38114;38115;38116;38117;38118;38119;38120;38121;38122;38123;38124;38125;38126;38127;38128;38129;38130;38131;38132;38133 23433;23434 23434 1 ARDEAIAYLSK Unmodified 1235.651 0.65100113 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 19.582 19.846 2;3 0.00046981 7732 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 102.53 87.862 302810000 9779500 4544800 11623000 5056000 4674000 5371900 22026000 23222000 25432000 12056000 8620500 9987500 14758000 14423000 12192000 899220 2702300 2989400 29428000 28306000 31227000 7638800 7791400 8064700 1963 997 1896 38134;38135;38136;38137;38138;38139;38140;38141;38142;38143;38144;38145;38146;38147;38148;38149;38150;38151;38152;38153;38154;38155;38156;38157;38158;38159;38160;38161;38162;38163;38164;38165;38166;38167;38168;38169;38170;38171;38172;38173;38174;38175;38176;38177;38178;38179 23435;23436;23437;23438;23439;23440;23441;23442;23443;23444;23445;23446;23447;23448;23449;23450;23451;23452;23453;23454;23455 23449 21 ARDMLYPER Oxidation (M) 1165.555 0.55499226 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1 1 1 13.166 13.327 2 0.0031082 3169 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 83.647 68.871 51554000 0 0 0 0 0 0 0 0 0 9069400 10589000 6622100 0 0 0 8770600 3591400 0 0 0 0 4798900 3969000 4143800 1964 1616 1897 38180;38181;38182;38183;38184;38185;38186;38187;38188 23456;23457;23458;23459 23456 561 4 ARDMLYPER Unmodified 1149.5601 0.56007764 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 16.338 16.394 2;3 8.0205E-08 4477 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 194.06 177.86 1401900000 0 0 0 0 0 0 0 0 0 192380000 183940000 178770000 0 0 0 172020000 114650000 134840000 0 0 0 147740000 141070000 136460000 1965 1616 1897 38189;38190;38191;38192;38193;38194;38195;38196;38197;38198;38199;38200;38201;38202;38203;38204;38205;38206 23460;23461;23462;23463;23464;23465;23466;23467;23468;23469;23470;23471;23472;23473;23474;23475;23476;23477 23477 18 AREAIDNK Unmodified 915.47739 0.47739386 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 9.9456 10.079 2 0.0087309 1912 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 87.251 57.066 38721000 0 0 0 0 0 0 0 0 0 412020 522660 485580 0 0 0 36510000 148750 0 0 0 0 0 294220 347290 1966 1005 1898 38207;38208;38209;38210;38211;38212;38213 23478 23478 1 AREELRK Unmodified 900.51411 0.51411372 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.8993 7.5171 2 0.057019 1766 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 83.364 44.391 357730000 0 0 0 9013000 6432900 8863600 13850000 14733000 14954000 26160000 34444000 44201000 13647000 15281000 12774000 0 2435800 1105800 23902000 20280000 19877000 29076000 15944000 30755000 1967 642 1899 38214;38215;38216;38217;38218;38219;38220;38221;38222;38223;38224;38225;38226;38227;38228;38229;38230;38231;38232;38233 23479;23480 23479 2 AREIWFLCR Unmodified 1249.639 0.63899666 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 35.085 33.267 3 0.00055225 12667 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 91.867 86.768 30766000 0 0 0 3121800 3820200 3149300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6232000 7272900 7169900 1968 679 1900 38234;38235;38236;38237;38238;38239 23481;23482;23483;23484;23485;23486 23483 6 AREVPAAIQK Unmodified 1081.6244 0.62439245 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 1 By MS/MS 1 12.582 12.582 2 0.10157 2850 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 59.153 48.443 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1969 376 1901 38240 23487 23487 1 ARGEDIEPLR Unmodified 1154.6044 0.60438529 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 14.239 15.031 2;3 5.8147E-09 4970 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 196.27 180.07 1896700000 81274000 67875000 48451000 0 0 0 235160000 246240000 247330000 0 0 0 162400000 143310000 145910000 0 0 0 168780000 149080000 200880000 0 0 0 1970 441 1902 38241;38242;38243;38244;38245;38246;38247;38248;38249;38250;38251;38252;38253;38254;38255;38256;38257;38258;38259;38260;38261;38262 23488;23489;23490;23491;23492;23493;23494;23495;23496;23497;23498;23499;23500;23501;23502;23503;23504;23505;23506 23498 19 ARIDGEVCDLSDPPKLELQK Unmodified 2282.1576 0.15764621 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 1 2 30.062 30.078 3;4 0.017429 9912 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 41.962 38.674 30243000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14042000 8457500 7743600 0 0 0 0 0 0 1971 222 1903 38263;38264;38265;38266;38267 23507;23508;23509 23509 2 ARLEEGLNPNAILVPQQGVTR Unmodified 2274.2444 0.24442781 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.728 35.168 3 2.6653E-10 13886 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 119.18 116.25 258540000 0 0 0 11104000 9469900 11200000 0 0 0 48402000 48113000 40490000 0 0 0 10705000 8718800 7948700 0 2880100 4597000 16897000 21614000 16404000 1972 826 1904 38268;38269;38270;38271;38272;38273;38274;38275;38276;38277;38278;38279;38280;38281 23510;23511;23512;23513;23514;23515;23516;23517;23518;23519;23520;23521 23514 12 ARNEQDGGDLVYFQGHISPGVYAR Unmodified 2648.2732 0.27316175 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 10 12 11 2 2 2 3 3 3 2 2 3 2 2 2 3 2 1 11 10 12 34.676 33.021 2;3;4;5 3.7109E-40 11027 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 232.15 227.6 23633000000 63055000 72481000 52343000 3810900000 3283500000 3195800000 104210000 91621000 83729000 315820000 361910000 219170000 40954000 33072000 40560000 103530000 106850000 94872000 105250000 110030000 34504000 3546700000 3763800000 3998300000 1973 939 1905 38282;38283;38284;38285;38286;38287;38288;38289;38290;38291;38292;38293;38294;38295;38296;38297;38298;38299;38300;38301;38302;38303;38304;38305;38306;38307;38308;38309;38310;38311;38312;38313;38314;38315;38316;38317;38318;38319;38320;38321;38322;38323;38324;38325;38326;38327;38328;38329;38330;38331;38332;38333;38334;38335;38336;38337;38338;38339;38340;38341;38342;38343;38344;38345;38346;38347;38348;38349;38350;38351;38352;38353;38354;38355;38356;38357;38358;38359;38360;38361;38362;38363;38364;38365;38366;38367;38368;38369;38370;38371;38372;38373;38374;38375;38376;38377;38378;38379;38380;38381;38382;38383;38384;38385;38386;38387;38388;38389 23522;23523;23524;23525;23526;23527;23528;23529;23530;23531;23532;23533;23534;23535;23536;23537;23538;23539;23540;23541;23542;23543;23544;23545;23546;23547;23548;23549;23550;23551;23552;23553;23554;23555;23556;23557;23558;23559;23560;23561;23562;23563;23564;23565;23566;23567;23568;23569;23570;23571;23572;23573;23574;23575;23576;23577;23578;23579;23580;23581;23582;23583;23584;23585;23586;23587;23588;23589;23590;23591;23592;23593;23594;23595;23596;23597;23598;23599;23600;23601;23602;23603;23604;23605;23606;23607;23608;23609;23610 23600 86 ARPAEQPAPVK Unmodified 1162.6459 0.64585618 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.647 11.462 2 6.2391E-08 2725 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 177.78 141.22 356640000 36888000 28418000 30354000 0 0 0 32816000 26073000 27780000 0 0 0 22120000 23008000 20851000 0 0 0 38740000 36137000 33450000 0 0 0 1974 1221 1906 38390;38391;38392;38393;38394;38395;38396;38397;38398;38399;38400;38401 23611;23612;23613;23614;23615;23616;23617;23618;23619;23620;23621;23622 23611 12 ARPESQELNILR Unmodified 1424.7736 0.77357588 825 P0AE01 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 1 1 1 22.174 22.037 2;3 2.0535E-06 9479 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.09 126.77 1151800000 37549000 113390000 104480000 0 0 0 139330000 156760000 140420000 0 0 0 141290000 40422000 127800000 0 0 0 45534000 50609000 54219000 0 0 0 1975 825 1907 38402;38403;38404;38405;38406;38407;38408;38409;38410;38411;38412;38413;38414;38415;38416;38417;38418;38419;38420;38421 23623;23624;23625;23626;23627;23628;23629;23630;23631;23632;23633;23634;23635;23636;23637;23638;23639 23625 17 ARPHQLEAIVEK Unmodified 1389.7728 0.7728476 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 13.927 14.505 2;3 5.5573E-09 4433 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 178.67 163.51 1868500000 170880000 125930000 108990000 0 0 0 132510000 125660000 131240000 4241700 3221900 3904200 163670000 148200000 98938000 10347000 6973500 7597100 194120000 228070000 197650000 3270500 0 3117400 1976 197 1908 38422;38423;38424;38425;38426;38427;38428;38429;38430;38431;38432;38433;38434;38435;38436;38437;38438;38439;38440;38441;38442;38443;38444;38445;38446;38447;38448;38449;38450;38451;38452;38453;38454;38455;38456;38457;38458 23640;23641;23642;23643;23644;23645;23646;23647;23648;23649;23650;23651;23652;23653;23654;23655;23656;23657;23658;23659;23660;23661;23662;23663;23664;23665;23666 23646 27 ARPQGEK Unmodified 784.41915 0.4191507 1298 P27298 prlC Oligopeptidase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 2 2 2 1 2 1 4.5679 5.444 2 0.0070117 954 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.39 76.053 252150000 24663000 24691000 23134000 0 0 1406800 0 8878400 9813500 0 0 0 27993000 25960000 23398000 0 0 0 24184000 36017000 22009000 0 0 0 1977 1298 1909 38459;38460;38461;38462;38463;38464;38465;38466;38467;38468;38469;38470;38471;38472;38473;38474 23667;23668;23669;23670;23671 23669 5 ARPYSGYENFDFEIPVGGGVSDCYTR Unmodified 2955.3134 0.31337159 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.352 44.811 3 2.3998E-22 21145 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 167.1 167.1 915930000 34655000 32784000 29579000 10549000 11487000 12213000 79478000 61871000 65473000 37469000 31971000 24934000 63133000 50159000 54485000 0 0 9177700 80958000 103450000 84433000 0 16328000 21348000 1978 1426 1910 38475;38476;38477;38478;38479;38480;38481;38482;38483;38484;38485;38486;38487;38488;38489;38490;38491;38492;38493;38494;38495 23672;23673;23674;23675;23676;23677;23678;23679;23680;23681;23682;23683;23684;23685;23686;23687 23685 16 ARVEDALHATR Unmodified 1237.6527 0.65273247 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 12.346 12.983 2;3 0.00044038 2720 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 97.456 92.468 420570000 27997000 27182000 28254000 21857000 17308000 17166000 20726000 30299000 29733000 13125000 8145500 8907000 21385000 19498000 19206000 5789700 3009200 2672500 8930800 26838000 29425000 10473000 11266000 11375000 1979 240 1911 38496;38497;38498;38499;38500;38501;38502;38503;38504;38505;38506;38507;38508;38509;38510;38511;38512;38513;38514;38515;38516;38517;38518;38519;38520;38521;38522;38523;38524;38525;38526;38527;38528;38529;38530;38531;38532;38533;38534;38535;38536;38537;38538;38539 23688;23689;23690;23691;23692;23693;23694;23695 23694 8 ARVTVQDAVEK Unmodified 1214.6619 0.66190017 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 2 2 2 2 13.022 13.306 2;3 4.3395E-07 3176 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 186.74 159.62 2743900000 0 0 0 1310100 903310 0 4871700 0 3979900 70172000 63179000 68328000 0 0 0 675690000 638100000 532230000 0 0 0 210030000 225540000 249620000 1980 384 1912 38540;38541;38542;38543;38544;38545;38546;38547;38548;38549;38550;38551;38552;38553;38554;38555;38556;38557;38558;38559;38560;38561 23696;23697;23698;23699;23700;23701;23702;23703;23704;23705;23706;23707;23708;23709;23710 23705 14 ASAAESAGGHLDPQNTGK Unmodified 1709.7969 0.7968901 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 1 12.15 12.935 2;3 6.1336E-81 3649 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 331.8 330.95 1071500000 244430000 256780000 261040000 0 0 0 82184000 81090000 69971000 0 0 0 16255000 13552000 0 0 0 0 19146000 13337000 13760000 0 0 0 1981 1007 1913 38562;38563;38564;38565;38566;38567;38568;38569;38570;38571;38572;38573;38574;38575;38576;38577;38578 23711;23712;23713;23714;23715;23716;23717;23718;23719;23720;23721 23718 11 ASAAESAGGHLDPQNTGKHEGPEGAGHLGDLPALVVNNDGK Unmodified 3986.9107 0.91069767 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 28.613 27.314 5;6 3.5017E-13 12474 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 102.04 99.267 388070000 130540000 101700000 89963000 0 0 0 31315000 17222000 17323000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1982 1007 1914 38579;38580;38581;38582;38583;38584;38585;38586;38587;38588 23722;23723;23724;23725 23724 4 ASADPQGNPWDPK Unmodified 1381.6262 0.62624295 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By MS/MS 1 22.222 22.171 2 0.0050737 9205 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 65.5 64.118 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1983 1393 1915 38589 23726 23726 1 ASAFPTEDPQK Unmodified 1189.5615 0.56151742 1382 P31808 yciK Uncharacterized oxidoreductase YciK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.039 17.78 2 6.3474E-05 6307 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 126.82 116.8 245450000 29180000 30739000 21758000 0 0 0 22295000 20464000 23361000 0 0 0 16683000 16867000 11202000 0 0 0 20239000 18158000 14506000 0 0 0 1984 1382 1916 38590;38591;38592;38593;38594;38595;38596;38597;38598;38599;38600;38601 23727;23728;23729;23730;23731;23732;23733;23734;23735;23736 23734 10 ASAGLIISEATQISAQAK Unmodified 1757.9523 0.95232811 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 42.631 40.86 2 0.046758 20400 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 68.42 62.936 51037000 0 0 0 0 0 0 5928400 6656400 6727100 0 0 0 5149200 5835900 6017300 0 0 0 7289000 0 7434200 0 0 0 1985 1890 1917 38602;38603;38604;38605;38606;38607;38608;38609 23737 23737 0 ASAHASR Unmodified 698.34599 0.34598576 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 3.2571 4.1455 2 0.00022693 508 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 163.84 163.84 133170000 14007000 13508000 12284000 0 0 0 0 1051400 0 0 0 0 7553300 11012000 9035200 0 0 0 20123000 22740000 21852000 0 0 0 1986 57 1918 38610;38611;38612;38613;38614;38615;38616;38617;38618;38619 23738;23739;23740;23741;23742;23743;23744;23745;23746 23740 9 ASAIVTNR Unmodified 830.46102 0.46101552 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.389 12.027 2 7.1553E-05 2725 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 166.78 120.83 400580000 18152000 18312000 14426000 0 13487000 16699000 20545000 25878000 22591000 35539000 24829000 23239000 14283000 10393000 10491000 0 0 5226500 24887000 20781000 24168000 17248000 21707000 17701000 1987 1210 1919 38620;38621;38622;38623;38624;38625;38626;38627;38628;38629;38630;38631;38632;38633;38634;38635;38636;38637;38638;38639;38640;38641 23747;23748;23749;23750;23751;23752 23750 6 ASAPGQISVNDLR Unmodified 1326.6892 0.68917755 109 P05194 aroD 3-dehydroquinate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.915 25.768 2 3.5928E-12 11546 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.28 173.8 260530000 37786000 35791000 33026000 0 0 0 18912000 13632000 18162000 0 0 0 13915000 15564000 16382000 0 0 0 20884000 20007000 16465000 0 0 0 1988 109 1920 38642;38643;38644;38645;38646;38647;38648;38649;38650;38651;38652;38653 23753;23754;23755;23756;23757;23758;23759;23760;23761;23762;23763;23764 23761 12 ASAQLETIK Unmodified 959.52876 0.52876073 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 2 1 1 1 2 2 2 2 2 2 15.303 16.157 2 1.6488E-05 5318 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 157.86 83.733 8462000000 374280000 316640000 290790000 8611000 9754900 8479300 926080000 945960000 940050000 0 0 0 747280000 644850000 640180000 0 0 0 980210000 790010000 838860000 0 0 0 1989 192 1921 38654;38655;38656;38657;38658;38659;38660;38661;38662;38663;38664;38665;38666;38667;38668;38669;38670;38671;38672;38673;38674;38675;38676;38677;38678;38679;38680 23765;23766;23767;23768;23769;23770;23771;23772;23773;23774;23775;23776;23777;23778;23779;23780;23781;23782;23783;23784;23785;23786 23774 18 ASATDQLK Unmodified 832.42905 0.42904669 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.41 12.089 2 0.0039041 2991 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 89.142 57.853 406840000 16445000 0 14020000 0 0 2496700 0 35890000 0 9033500 8148600 8378700 65153000 56689000 49585000 0 0 0 66550000 68811000 0 0 5635300 0 1990 642 1922 38681;38682;38683;38684;38685;38686;38687;38688;38689;38690;38691;38692;38693 23787;23788;23789 23789 2 ASATDQLKK Unmodified 960.52401 0.52400971 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.59 11.034 2 2.2218E-05 2109 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 157.33 92.083 1458100000 94102000 0 0 0 0 0 126890000 137650000 112730000 84937000 75681000 76444000 0 0 104110000 16546000 9656400 9426100 151100000 150680000 140480000 54834000 56700000 56100000 1991 642 1923 38694;38695;38696;38697;38698;38699;38700;38701;38702;38703;38704;38705;38706;38707;38708;38709;38710 23790;23791;23792;23793;23794;23795;23796;23797;23798;23799 23792 9 ASAVGSHTTLSR Unmodified 1185.6102 0.61019895 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 11.257 11.929 2 0.024214 3020 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 57.785 37.086 21314000 0 0 0 894290 0 759830 0 5173800 6875900 0 4258300 3351500 0 0 0 0 0 0 0 0 0 0 0 0 1992 1980 1924 38711;38712;38713;38714;38715;38716 23800;23801 23800 0 ASDELASIQAVIDK Unmodified 1458.7566 0.75658842 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.645 42.13 2;3 9.3452E-06 20397 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.022 56.885 734890000 118200000 100820000 95184000 0 0 0 69215000 56455000 59764000 0 0 0 35681000 29596000 29199000 0 0 0 48018000 45924000 46835000 0 0 0 1993 1233 1925 38717;38718;38719;38720;38721;38722;38723;38724;38725;38726;38727;38728;38729;38730;38731;38732;38733;38734;38735;38736;38737;38738;38739;38740 23802;23803;23804;23805;23806;23807;23808 23806 2 ASDFTDEK Unmodified 911.38724 0.38724145 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 11.807 12.638 2 0.12395 3280 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 52.937 36.397 111130000 0 29691000 26784000 0 0 0 22077000 0 0 0 0 0 19716000 12859000 0 0 0 0 0 0 0 0 0 0 1994 1586 1926 38741;38742;38743;38744;38745 23809 23809 0 ASDFVLAMGQGR Unmodified 1250.6078 0.60775611 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 2 2 2 1 2 1 2 2 2 1 2 2 2 2 2 1 1 1 34.989 33.543 2;3 2.035E-06 16306 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 185.72 157.32 11654000000 828050000 842940000 796070000 14428000 16386000 14096000 784390000 826050000 780620000 36044000 36452000 34014000 989380000 946180000 944400000 23997000 14695000 18210000 1154400000 1314000000 1170800000 22642000 23907000 22113000 1995 396 1927 38746;38747;38748;38749;38750;38751;38752;38753;38754;38755;38756;38757;38758;38759;38760;38761;38762;38763;38764;38765;38766;38767;38768;38769;38770;38771;38772;38773;38774;38775;38776;38777;38778;38779;38780;38781;38782;38783;38784;38785;38786 23810;23811;23812;23813;23814;23815;23816;23817;23818;23819;23820;23821;23822;23823;23824;23825;23826;23827;23828;23829;23830;23831;23832;23833;23834;23835;23836;23837;23838;23839;23840;23841;23842;23843 23818 33 ASDFVLAMGQGR Oxidation (M) 1266.6027 0.60267073 396 P0A850 tig Trigger factor yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 1 1 2 1 1 26.413 25.241 2 0.00077336 11299 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 82.749 63.387 113780000 5847000 16274000 0 0 0 0 18661000 19206000 6681600 0 0 0 8870300 5877900 6188000 0 0 0 8634700 9731400 7807100 0 0 0 1996 396 1927 38787;38788;38789;38790;38791;38792;38793;38794;38795;38796;38797;38798;38799;38800;38801 23844;23845;23846;23847;23848;23849;23850;23851;23852;23853;23854 23852 179 10 ASDGETYQLNFIDTPGHVDFSYEVSR Unmodified 2946.3308 0.33079579 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 2 48.321 47.398 3 4.0882E-07 18818 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 101.32 98.971 70324000 0 0 0 0 2682300 2618700 0 0 0 0 0 0 4322200 0 2107000 4916400 6748600 9672800 0 3986200 0 9043300 6915200 17312000 1997 1633 1928 38802;38803;38804;38805;38806;38807;38808;38809;38810;38811;38812;38813;38814 23855;23856;23857;23858;23859;23860;23861 23857 7 ASDGGQTVSGVVK Unmodified 1203.6095 0.60953025 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 13.534 14.478 2 9.2098E-07 3324 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 136.96 108.56 98143000 12818000 9541300 8258000 21888000 22093000 23545000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1998 114 1929 38815;38816;38817;38818;38819;38820 23862;23863;23864;23865 23864 3 ASDLHNAK Unmodified 854.42463 0.42463001 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4.8816 5.7784 2 1.8568E-09 973 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 217.21 199.44 2843300000 807170000 1028800000 789750000 2645400 2408200 2686100 4127400 4482600 4259500 0 0 0 17011000 12596000 13199000 0 0 0 56421000 48989000 48732000 0 0 0 1999 318 1930 38821;38822;38823;38824;38825;38826;38827;38828;38829;38830;38831;38832;38833;38834;38835 23866;23867;23868;23869;23870;23871;23872;23873;23874;23875;23876 23870 11 ASDLVSR Unmodified 746.39227 0.39226725 967 P0AFW8 rof Protein rof yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.979 12.62 2 0.00022693 3298 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 163.84 113.3 584290000 59814000 54945000 45627000 0 1192500 0 77992000 74751000 70325000 1733700 1639900 1486800 35955000 29786000 26306000 887690 0 0 36932000 32166000 31076000 846190 822570 0 2000 967 1931 38836;38837;38838;38839;38840;38841;38842;38843;38844;38845;38846;38847;38848;38849;38850;38851;38852;38853;38854 23877;23878;23879;23880;23881;23882 23880 6 ASDQGPNAGK Unmodified 943.43592 0.43592298 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 5.44 6.2476 2 0.00042785 1015 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.74 98.201 348240000 44851000 34024000 30171000 0 0 0 46864000 42948000 43751000 0 0 0 0 0 0 0 0 0 33091000 37312000 35233000 0 0 0 2001 1298 1932 38855;38856;38857;38858;38859;38860;38861;38862;38863 23883;23884;23885 23884 3 ASDVFLAVESYR Unmodified 1355.6721 0.67213051 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 1 2 1 43.977 42.306 2 2.5247E-23 18587 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 235.66 204.59 881650000 77963000 71109000 74832000 1897600 1492800 2908400 76454000 74150000 63456000 1451000 1341300 0 69889000 63043000 60986000 0 0 0 74519000 81214000 72123000 3380800 6180300 3258400 2002 1649 1933 38864;38865;38866;38867;38868;38869;38870;38871;38872;38873;38874;38875;38876;38877;38878;38879;38880;38881;38882;38883;38884;38885;38886;38887;38888;38889;38890;38891;38892;38893;38894;38895;38896 23886;23887;23888;23889;23890;23891;23892;23893;23894;23895;23896;23897;23898;23899;23900 23899 15 ASDVKDSSLR Unmodified 1076.5462 0.54620171 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 11.102 11.225 2;3 2.2508E-12 2248 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 252.72 210.13 2641400000 0 0 0 0 0 0 0 0 0 69441000 67334000 61811000 0 0 0 726000000 687930000 632030000 0 0 0 138530000 138850000 119440000 2003 463 1934 38897;38898;38899;38900;38901;38902;38903;38904;38905;38906;38907;38908;38909;38910;38911;38912;38913;38914 23901;23902;23903;23904;23905;23906;23907;23908;23909;23910;23911;23912;23913;23914;23915 23909 15 ASDVKDSSLRVPNGVSGTVIDVQVFTR Unmodified 2845.4934 0.49338486 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 2 2 2 2 2 2 41.728 40.275 3;4 1.819E-22 14908 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 160 148.8 318910000 0 0 0 0 0 0 0 0 0 8091700 7089400 9424000 0 0 0 78240000 57461000 70628000 0 0 0 31664000 26979000 29335000 2004 463 1935 38915;38916;38917;38918;38919;38920;38921;38922;38923;38924;38925;38926;38927;38928;38929;38930;38931 23916;23917;23918;23919;23920;23921;23922 23916 7 ASDWGWQIDPVGLR Unmodified 1598.7841 0.78414057 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.104 49.848 2 1.5423E-19 24568 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 209.8 205.78 1830300000 96081000 86455000 76238000 0 0 0 175240000 188660000 154400000 0 0 0 184470000 169590000 167680000 0 0 0 190140000 174870000 166520000 0 0 0 2005 1956 1936 38932;38933;38934;38935;38936;38937;38938;38939;38940;38941;38942;38943 23923;23924;23925;23926;23927;23928;23929;23930;23931;23932;23933;23934 23924 12 ASEGDIQGHVDGWIK Unmodified 1610.7689 0.76888444 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 1 2 1 3 3 3 27.647 26.478 2;3 1.1804E-10 12509 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 157.52 138.77 3167700000 236400000 220140000 211360000 0 0 1341900 254700000 276130000 269010000 0 0 0 153270000 173390000 124430000 0 0 0 419010000 426340000 402200000 0 0 0 2006 954 1937 38944;38945;38946;38947;38948;38949;38950;38951;38952;38953;38954;38955;38956;38957;38958;38959;38960;38961;38962;38963;38964;38965 23935;23936;23937;23938;23939;23940;23941;23942;23943;23944;23945;23946;23947;23948;23949;23950 23943 14 ASEGELLAQVEPEDLIK Unmodified 1839.9466 0.94657403 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 48.332 47.063 2;3 1.1167E-24 23021 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 220.69 220.59 1573400000 135480000 112280000 114330000 4719600 4528400 4014100 128000000 124700000 123540000 9619700 11148000 12041000 130230000 109920000 113740000 3061900 4845400 4086900 131920000 145260000 135440000 5544600 4917000 0 2007 244 1938 38966;38967;38968;38969;38970;38971;38972;38973;38974;38975;38976;38977;38978;38979;38980;38981;38982;38983;38984;38985;38986;38987;38988;38989;38990;38991;38992;38993;38994;38995;38996;38997;38998;38999;39000;39001;39002;39003;39004;39005;39006;39007;39008;39009;39010 23951;23952;23953;23954;23955;23956;23957;23958;23959;23960;23961;23962;23963;23964;23965;23966;23967;23968;23969;23970;23971;23972;23973;23974;23975;23976;23977;23978;23979;23980;23981;23982 23971 32 ASEGFGEDTYLTSTMGK Unmodified 1792.7825 0.78254517 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.346 34.789 2 5.8595E-19 17105 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 193.49 193.3 206520000 13948000 11063000 12124000 0 0 0 19873000 22143000 22469000 0 0 0 16558000 12865000 15624000 0 0 0 21753000 18795000 19308000 0 0 0 2008 1421 1939 39011;39012;39013;39014;39015;39016;39017;39018;39019;39020;39021;39022 23983;23984;23985;23986;23987;23988;23989;23990;23991;23992 23983 10 ASEISALIVEEGGK Unmodified 1401.7351 0.73512469 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 36.451 34.861 2;3 7.0278E-08 15989 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 171.74 158.29 3657400000 708130000 713700000 738940000 1912800 2297800 1715300 127290000 109250000 130300000 0 0 0 114150000 117170000 111480000 0 0 0 249420000 258030000 270760000 0 1695600 1143300 2009 1264 1940 39023;39024;39025;39026;39027;39028;39029;39030;39031;39032;39033;39034;39035;39036;39037;39038;39039;39040;39041;39042;39043;39044;39045;39046;39047;39048;39049;39050;39051 23993;23994;23995;23996;23997;23998;23999;24000;24001;24002;24003;24004;24005;24006;24007;24008;24009;24010;24011;24012;24013;24014;24015;24016 24015 24 ASEISIK Unmodified 746.41742 0.41741937 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.84 14.724 2 0.0059278 4745 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.602 52.629 1949400000 81415000 75241000 69070000 0 0 716700 315850000 297970000 256170000 0 0 0 155320000 136360000 151370000 0 0 0 143640000 136090000 130190000 0 0 0 2010 257 1941 39052;39053;39054;39055;39056;39057;39058;39059;39060;39061;39062;39063;39064 24017;24018;24019;24020;24021;24022;24023;24024;24025;24026;24027;24028 24017 11 ASELLGGVR Unmodified 900.50288 0.50288033 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.514 21.778 2 9.9364E-06 8570 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.86 94.503 699190000 86301000 106250000 79108000 1114900 961240 1233500 155510000 18786000 152020000 0 0 0 9469100 5851500 0 0 0 0 25958000 27855000 28777000 0 0 0 2011 106 1942 39065;39066;39067;39068;39069;39070;39071;39072;39073;39074;39075;39076;39077;39078 24029;24030;24031 24031 3 ASENMTPQDYIGHHLNNLQLDLR Unmodified 2678.2871 0.28709726 641 P0AB98 atpB ATP synthase subunit a yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 1 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 41.187 39.588 3;4 2.6679E-10 13675 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 125.73 123.01 1897900000 45669000 45918000 38368000 18903000 17215000 16971000 119090000 134270000 88600000 58455000 55713000 57984000 152510000 127850000 147690000 31439000 21418000 40327000 183510000 165640000 157220000 55789000 56879000 60454000 2012 641 1943 39079;39080;39081;39082;39083;39084;39085;39086;39087;39088;39089;39090;39091;39092;39093;39094;39095;39096;39097;39098;39099;39100;39101;39102;39103;39104;39105;39106;39107;39108;39109;39110;39111;39112;39113;39114;39115;39116;39117 24032;24033;24034;24035;24036;24037;24038;24039;24040;24041;24042;24043;24044;24045;24046;24047;24048;24049;24050;24051;24052;24053;24054;24055;24056;24057;24058;24059;24060;24061;24062;24063;24064;24065 24034 34 ASETFMYAR Unmodified 1074.4804 0.48043033 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.543 21.989 2 0.00011938 8951 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 133.6 121.83 496140000 6359000 6633800 6910700 0 0 0 61315000 59434000 52034000 0 0 0 65777000 63929000 61863000 0 0 0 37854000 37171000 36860000 0 0 0 2013 1947 1944 39118;39119;39120;39121;39122;39123;39124;39125;39126;39127;39128;39129 24066;24067;24068;24069;24070;24071;24072;24073;24074 24073 6 ASEVDEALQR Unmodified 1116.5411 0.54111633 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.694 18.247 2 4.4637E-23 6909 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 249.99 237.03 1134000000 163010000 0 135190000 20103000 19143000 20060000 196410000 173040000 180090000 8332800 8398100 8280100 26405000 25123000 26491000 0 0 0 38339000 45564000 40014000 0 0 0 2014 147 1945 39130;39131;39132;39133;39134;39135;39136;39137;39138;39139;39140;39141;39142;39143;39144;39145;39146 24075;24076;24077;24078;24079;24080;24081;24082;24083;24084;24085;24086;24087;24088;24089;24090;24091 24078 17 ASFALQGAHLLSWK Unmodified 1527.8198 0.8197978 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 2 2 2 2 1 1 2 2 40.979 39.166 2;3 0.00017019 19424 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 66.797 59.904 59502000 0 0 0 0 0 0 12357000 9960900 9827100 0 0 0 5310000 3950100 3619200 0 0 0 7330800 7146900 0 0 0 0 2015 1510 1946 39147;39148;39149;39150;39151;39152;39153;39154;39155;39156;39157;39158;39159;39160 24092;24093;24094;24095 24094 3 ASFALQGAHLLSWKPAGEEEVLWLSNNTPFK Unmodified 3439.7565 0.75647584 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 1 2 2 1 2 2 2 2 2 2 53.079 51.654 3;4 5.9259E-18 25325 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 149.14 139.92 1381300000 18695000 95503000 94184000 1407300 0 1327100 156240000 166510000 117720000 0 0 0 94100000 130630000 100160000 0 0 0 139860000 135740000 129230000 0 0 0 2016 1510 1947 39161;39162;39163;39164;39165;39166;39167;39168;39169;39170;39171;39172;39173;39174;39175;39176;39177;39178;39179;39180;39181;39182;39183;39184 24096;24097;24098;24099;24100;24101;24102;24103;24104 24099 9 ASFGGQIITVK Unmodified 1119.6288 0.62880913 454 P0A8R0 rraA Regulator of ribonuclease activity A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.331 28.864 2 0.051673 13544 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 44.57 17.316 560150000 79549000 76323000 59575000 0 0 2157500 46313000 41186000 37705000 2427000 2145100 1592500 34870000 35200000 33075000 639420 0 0 35426000 36577000 35394000 0 0 0 2017 454 1948 39185;39186;39187;39188;39189;39190;39191;39192;39193;39194;39195;39196;39197;39198;39199;39200;39201 24105 24105 1 ASFVTLQDVGGR Unmodified 1248.6463 0.64625011 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.61 31.978 2 1.535E-06 15468 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 180.27 161.29 10046000000 743600000 724060000 668190000 3389400 3249900 3987100 1246100000 1233300000 1071000000 6060200 5415100 4914300 669990000 591120000 594500000 0 0 0 847910000 847600000 781730000 0 0 0 2018 448;449 1949 39202;39203;39204;39205;39206;39207;39208;39209;39210;39211;39212;39213;39214;39215;39216;39217;39218;39219 24106;24107;24108;24109;24110;24111;24112;24113;24114;24115;24116;24117;24118;24119 24108 14 ASGANSILAELSNEAVALSMDDAVR Unmodified 2503.2224 0.22243132 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By matching By MS/MS 2 2 55.622 54.192 2;3 6.5566E-50 26791 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 314.11 303.78 101920000 24056000 77860000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2019 1822 1950 39220;39221;39222;39223 24120;24121 24121 2 ASGLATYR Unmodified 837.43447 0.43446642 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.311 14.803 2 7.5241E-05 3912 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 166.05 90.016 691880000 5306700 0 3321200 542790 0 0 95895000 102090000 3041600 18329000 13254000 16954000 0 86807000 73582000 3975300 2850000 2324400 110280000 111530000 2346800 13588000 11478000 14387000 2020 75 1951 39224;39225;39226;39227;39228;39229;39230;39231;39232;39233;39234;39235;39236;39237;39238;39239;39240;39241;39242;39243 24122;24123;24124;24125;24126;24127;24128;24129 24124 8 ASGLLELR Unmodified 857.49707 0.49706667 1606 P52119 ratB UPF0125 protein RatB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.332 27.857 2 0.0036566 13031 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 90.308 54.123 41871000 0 0 0 0 707900 653220 9741000 6827000 13068000 0 0 0 3799400 0 0 0 0 0 0 3392200 2564600 1117100 0 0 2021 1606 1952 39244;39245;39246;39247;39248;39249;39250;39251;39252 24130 24130 1 ASGMDTLYAR Unmodified 1083.5019 0.50189405 1645 P62517 mdoH Glucans biosynthesis glucosyltransferase H yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.126 21.931 2 0.00019392 9068 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.1 120.06 100740000 5746800 2942800 3996500 1088300 1293600 0 10884000 9565600 8206500 2381700 2749800 3033900 6654900 5507000 6373100 843350 478820 737050 8085400 7012400 9331000 1778400 1232200 819440 2022 1645 1953 39253;39254;39255;39256;39257;39258;39259;39260;39261;39262;39263;39264;39265;39266;39267;39268;39269;39270;39271;39272;39273;39274;39275 24131;24132;24133;24134;24135;24136 24134 6 ASGTDEAVVLVPPIR Unmodified 1522.8355 0.83550744 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 1 40.98 39.481 2;3 3.2821E-21 18295 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 224.58 218.04 4690900000 330530000 323070000 288330000 4894000 5174100 3988600 414520000 360090000 364600000 5554000 3581300 5140200 434880000 388910000 412460000 8033100 4251200 4481900 428110000 452620000 441340000 0 3302000 3065000 2023 1388 1954 39276;39277;39278;39279;39280;39281;39282;39283;39284;39285;39286;39287;39288;39289;39290;39291;39292;39293;39294;39295;39296;39297;39298;39299;39300;39301;39302;39303;39304;39305;39306;39307;39308;39309;39310;39311;39312;39313;39314 24137;24138;24139;24140;24141;24142;24143;24144;24145;24146;24147;24148;24149;24150;24151;24152;24153;24154;24155;24156;24157;24158;24159;24160;24161;24162;24163;24164;24165 24164 29 ASGVPFIPLR Unmodified 1055.6128 0.61276513 1853 P76346 mtfA Protein MtfA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.065 39.222 2 0.0037296 15653 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 71.501 44.899 185870000 28777000 22125000 19904000 0 1532600 0 14153000 11201000 13667000 2558300 2265800 2251300 11279000 8506700 9527200 0 0 0 11377000 14460000 12285000 0 0 0 2024 1853 1955 39315;39316;39317;39318;39319;39320;39321;39322;39323;39324;39325;39326;39327;39328;39329;39330 24166 24166 1 ASHMFLSPDK Unmodified 1131.5383 0.53827956 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 16.846 17.628 2;3 0.0038661 6001 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 70.552 63.883 311180000 56894000 58757000 48915000 0 0 0 14787000 13762000 12603000 0 0 0 12814000 12566000 12132000 0 0 0 25026000 22228000 20696000 0 0 0 2025 44 1956 39331;39332;39333;39334;39335;39336;39337;39338;39339;39340;39341;39342;39343;39344;39345;39346;39347;39348;39349;39350;39351 24167;24168 24168 1 ASIFHIEGDPDHPVNR Unmodified 1802.87 0.86999547 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 2 2 2 1 1 2 1 1 1 1 1 1 1 1 2 23.798 22.929 3;4 0.00013314 7336 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 70.529 70.372 195420000 0 9599400 10909000 3017500 2434200 2635900 9011000 20143000 21093000 7202600 6546000 11234000 9752500 6408600 17687000 1251600 2268400 2544700 14206000 12823000 9845700 4712000 4416300 5682200 2026 1393 1957 39352;39353;39354;39355;39356;39357;39358;39359;39360;39361;39362;39363;39364;39365;39366;39367;39368;39369;39370;39371;39372;39373;39374;39375;39376;39377;39378;39379;39380;39381 24169;24170;24171;24172;24173 24170 4 ASIIDESNGR Unmodified 1060.5149 0.51490158 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 15.38 16.107 2 0.00027198 5546 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.64 80.386 65496000 6820300 9983400 7328100 0 0 0 12318000 12166000 9217700 0 0 0 0 0 0 0 0 0 0 3381100 4280600 0 0 0 2027 709 1958 39382;39383;39384;39385;39386;39387;39388;39389 24174;24175;24176;24177;24178 24175 5 ASINTDDPGVQGVDIIHEYTVAAPAAGLSR Unmodified 3036.5152 0.51524252 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.436 46.115 3 7.6094E-17 18686 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 150.68 144.25 2008500000 109890000 117660000 94300000 6964100 6355900 4845400 176800000 175340000 152770000 48390000 40830000 41452000 172380000 165180000 146790000 24394000 13669000 13226000 155930000 163450000 164990000 7366800 0 5512300 2028 1196 1959 39390;39391;39392;39393;39394;39395;39396;39397;39398;39399;39400;39401;39402;39403;39404;39405;39406;39407;39408;39409;39410;39411;39412 24179;24180;24181;24182;24183;24184;24185;24186;24187;24188;24189;24190;24191;24192;24193;24194;24195 24179 17 ASIPEGVWTK Unmodified 1086.571 0.5709599 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.493 27.997 2 0.0034205 12946 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 73.157 69.171 1093400000 77735000 75583000 79316000 1511800 1433200 1955500 89948000 76054000 84166000 7228500 6747900 7705300 79043000 79970000 75706000 0 0 0 99920000 110470000 107280000 10305000 10397000 10961000 2029 547 1960 39413;39414;39415;39416;39417;39418;39419;39420;39421;39422;39423;39424;39425;39426;39427;39428;39429;39430;39431;39432;39433 24196;24197;24198;24199;24200 24198 5 ASISLGYIGIHETINALFGGEHVYDNEQLR Unmodified 3315.6524 0.6524047 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 53.881 52.43 4 1.9927E-16 25986 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.16 127.38 296070000 0 0 0 0 0 0 44760000 43789000 29474000 0 0 0 34603000 25322000 19679000 0 0 0 36808000 33913000 27723000 0 0 0 2030 1323 1961 39434;39435;39436;39437;39438;39439;39440;39441;39442 24201;24202;24203;24204 24201 4 ASIWALGPLVAR Unmodified 1252.7292 0.72919187 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.884 49.551 2 4.2801E-08 24492 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 157.91 147.88 1035200000 62535000 63832000 58645000 892310 805830 965300 69961000 57894000 54211000 1904700 0 0 104020000 92372000 92356000 0 0 0 123260000 124880000 126700000 0 0 0 2031 311 1962 39443;39444;39445;39446;39447;39448;39449;39450;39451;39452;39453;39454;39455;39456;39457;39458 24205;24206;24207;24208;24209;24210;24211;24212;24213;24214;24215;24216 24206 12 ASIYNAMPLEGVK Unmodified 1391.7119 0.71188683 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.148 35.379 2 4.7682E-06 17067 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 154.24 143.72 2148400000 344350000 304620000 267140000 25631000 29904000 26829000 139990000 129050000 120420000 39187000 35494000 39865000 88576000 88075000 87792000 0 0 1715500 123440000 119880000 126550000 4328300 2117700 3432200 2032 1211 1963 39459;39460;39461;39462;39463;39464;39465;39466;39467;39468;39469;39470;39471;39472;39473;39474;39475;39476;39477;39478;39479;39480 24217;24218;24219;24220;24221;24222;24223;24224;24225;24226;24227;24228;24229;24230;24231 24226 15 ASKKDLELGGHMASFQSSATIYDVCFNHFFR Unmodified 3562.6762 0.67619339 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By matching By matching 1 1 1 42.9 41.281 5 0.0011829 14626 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 53.895 52.232 33329000 0 0 0 11829000 13809000 7690700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2033 939 1964 39481;39482;39483 24232 24232 1 ASLADIIVLAGVVGVEK Unmodified 1652.9713 0.97127264 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.683 54.216 2;3 1.7438E-25 26901 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 222.94 202.16 3074600000 309540000 315850000 298340000 0 0 0 459380000 429740000 127450000 0 0 0 214550000 198390000 174200000 0 0 0 186510000 180680000 179950000 0 0 0 2034 1086 1965 39484;39485;39486;39487;39488;39489;39490;39491;39492;39493;39494;39495;39496;39497;39498;39499;39500;39501;39502;39503;39504;39505;39506;39507 24233;24234;24235;24236;24237;24238;24239;24240;24241;24242;24243;24244;24245;24246;24247;24248;24249;24250;24251;24252;24253;24254;24255 24237 23 ASLAMYNTHEEVDR Unmodified 1634.7359 0.73586975 1906 P77444 sufS Cysteine desulfurase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 19.264 19.786 2;3 0.04954 7599 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 40.477 40.397 308540000 37128000 35122000 32281000 4533000 4002900 3865400 35138000 34569000 32518000 0 0 0 10536000 12035000 11925000 0 0 0 16884000 18735000 19264000 0 0 0 2035 1906 1966 39508;39509;39510;39511;39512;39513;39514;39515;39516;39517;39518;39519;39520;39521;39522;39523;39524;39525;39526;39527;39528;39529;39530;39531;39532;39533;39534;39535 24256;24257 24256 0 ASLAPGSK Unmodified 729.4021 0.40210366 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 11.143 11.866 2 0.0026816 2969 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.458 73.826 400870000 0 208400000 192480000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2036 1254 1967 39536;39537;39538 24258;24259;24260 24259 3 ASLATESFISAASFQETTR Unmodified 2015.98 0.97999942 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 1 3 14 13 13 2 1 2 20 19 27 1 12 15 18 49.538 48.574 2;3 4.9579E-95 17561 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 346.65 317.31 14591000000 0 6865700 2994900 890520 6517400 637990 9051400 8324300 15467000 1491600000 1819300000 1420800000 4521500 5112700 7064200 3825000000 2702600000 2872900000 0 5272600 0 84682000 132870000 168690000 2037 458 1968 39539;39540;39541;39542;39543;39544;39545;39546;39547;39548;39549;39550;39551;39552;39553;39554;39555;39556;39557;39558;39559;39560;39561;39562;39563;39564;39565;39566;39567;39568;39569;39570;39571;39572;39573;39574;39575;39576;39577;39578;39579;39580;39581;39582;39583;39584;39585;39586;39587;39588;39589;39590;39591;39592;39593;39594;39595;39596;39597;39598;39599;39600;39601;39602;39603;39604;39605;39606;39607;39608;39609;39610;39611;39612;39613;39614;39615;39616;39617;39618;39619;39620;39621;39622;39623;39624;39625;39626;39627;39628;39629;39630;39631;39632;39633;39634;39635;39636;39637;39638;39639;39640;39641;39642;39643;39644;39645;39646;39647;39648;39649;39650;39651;39652;39653;39654;39655;39656;39657;39658;39659;39660;39661;39662;39663;39664;39665;39666;39667;39668;39669;39670;39671;39672;39673;39674;39675;39676;39677;39678;39679;39680;39681;39682;39683;39684;39685;39686;39687;39688;39689;39690;39691;39692;39693;39694;39695;39696;39697;39698;39699;39700;39701;39702;39703;39704;39705;39706;39707;39708 24261;24262;24263;24264;24265;24266;24267;24268;24269;24270;24271;24272;24273;24274;24275;24276;24277;24278;24279;24280;24281;24282;24283;24284;24285;24286;24287;24288;24289;24290;24291;24292;24293;24294;24295;24296;24297;24298;24299;24300;24301;24302;24303;24304;24305;24306;24307;24308;24309;24310;24311;24312;24313;24314;24315;24316;24317;24318;24319;24320;24321;24322;24323;24324;24325;24326;24327;24328;24329;24330;24331;24332;24333;24334;24335;24336;24337;24338;24339;24340;24341;24342;24343;24344;24345;24346;24347;24348;24349;24350;24351;24352;24353;24354;24355;24356;24357;24358;24359;24360;24361;24362;24363;24364;24365;24366;24367;24368;24369;24370;24371;24372;24373;24374;24375;24376;24377;24378;24379;24380;24381;24382;24383;24384;24385;24386;24387;24388;24389;24390;24391;24392;24393;24394;24395;24396;24397;24398;24399;24400;24401;24402;24403;24404;24405;24406;24407;24408;24409;24410;24411;24412;24413;24414;24415;24416;24417;24418;24419;24420;24421;24422;24423;24424 24270 153 ASLEANVR Unmodified 858.45593 0.45593014 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.472 14.061 2 0.00045063 4270 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.37 49.244 5652800000 586330000 579430000 581630000 0 0 0 557680000 656850000 665800000 2497500 3425500 3246300 0 623020000 0 0 0 0 712140000 672350000 0 0 4271300 4156100 2038 869 1969 39709;39710;39711;39712;39713;39714;39715;39716;39717;39718;39719;39720;39721;39722 24425;24426;24427;24428;24429;24430;24431;24432;24433 24426 8 ASLENSLEETK Unmodified 1219.5932 0.59321148 6;12 CON__P02533;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08779 no no 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 20.439 20.418 2 0.0003566 6481 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 89.029 82.134 29217000 0 0 0 816890 855020 836400 0 0 0 7165500 6828000 7633500 0 0 0 0 0 0 0 0 0 0 2869700 2212100 + 2039 6;12 1970 39723;39724;39725;39726;39727;39728;39729;39730 24434;24435 24434 2 ASLGETIDIVDHQGK Unmodified 1581.7999 0.79985021 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 1 1 1 2 2 2 1 1 2 1 1 1 1 1 30.72 29.427 2;3 6.6631E-06 13666 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.02 124.58 565730000 49883000 32758000 40201000 0 0 0 59963000 40495000 51218000 8531800 9663700 9551100 50222000 48545000 40536000 8141100 6798200 8315400 43236000 0 40575000 5151700 5392200 6549900 2040 1787 1971 39731;39732;39733;39734;39735;39736;39737;39738;39739;39740;39741;39742;39743;39744;39745;39746;39747;39748;39749;39750;39751;39752;39753;39754;39755;39756;39757;39758 24436;24437;24438;24439;24440;24441;24442;24443;24444;24445;24446;24447;24448;24449;24450;24451;24452;24453;24454;24455;24456 24449 21 ASLGVDKDVYLTIPR Unmodified 1645.9039 0.90392136 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 36.441 34.763 2;3 1.9006E-06 13459 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 106.3 102.58 632530000 10631000 18567000 13943000 11199000 10820000 7749700 54949000 44863000 45673000 37584000 25566000 30569000 31858000 33369000 31534000 0 0 9569300 53893000 39891000 46275000 26278000 21639000 26113000 2041 844 1972 39759;39760;39761;39762;39763;39764;39765;39766;39767;39768;39769;39770;39771;39772;39773;39774;39775;39776;39777;39778;39779;39780;39781;39782;39783;39784;39785;39786;39787;39788;39789;39790;39791;39792;39793;39794;39795;39796;39797 24457;24458;24459;24460;24461;24462;24463;24464;24465;24466;24467;24468;24469;24470;24471;24472;24473;24474;24475 24462 14 ASLGVVMAAGGYPGDYR Unmodified 1682.8086 0.80864076 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 2 2 1 1 1 39.752 38.143 2;3 1.1424E-08 18611 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.21 143.68 246970000 72739000 58766000 56931000 0 0 0 5251700 3827600 6136200 0 0 0 5492700 7534400 6503800 0 0 0 8014700 8293800 7481400 0 0 0 2042 1112 1973 39798;39799;39800;39801;39802;39803;39804;39805;39806;39807;39808;39809;39810;39811;39812;39813;39814 24476;24477;24478;24479;24480;24481;24482 24477 7 ASLILTK Unmodified 744.47454 0.47454032 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.24 20.634 2 0.0035119 8084 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.67 79.419 342890000 26932000 29104000 23636000 0 216170 0 26141000 23182000 29099000 0 0 0 26101000 20623000 24692000 0 0 0 40743000 35459000 36964000 0 0 0 2043 248 1974 39815;39816;39817;39818;39819;39820;39821;39822;39823;39824;39825;39826;39827 24483;24484;24485;24486;24487;24488;24489;24490 24485 8 ASLMSMTPTLNR Unmodified 1320.653 0.65299174 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.333 33.953 2 0.058071 16271 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 46.001 38.522 45800000 0 4503100 4164500 0 0 0 0 0 0 2499800 0 2202800 4186900 3325700 5029900 1854300 0 1545700 4585300 6969600 4932200 0 0 0 2044 1116 1975 39828;39829;39830;39831;39832;39833;39834;39835;39836;39837;39838;39839 24491;24492;24493;24494 24491 0 ASLPFISNELATLISQR Unmodified 1859.0153 0.015262719 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 55.129 54.025 2;3 7.2856E-19 20627 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 249.98 227.51 499260000 0 0 0 0 0 0 0 0 0 14886000 13665000 12202000 2673900 2086300 0 77482000 79238000 92703000 6288300 9330600 9462700 59591000 61677000 57975000 2045 1448 1976 39840;39841;39842;39843;39844;39845;39846;39847;39848;39849;39850;39851;39852;39853;39854;39855;39856;39857;39858;39859;39860;39861;39862;39863;39864 24495;24496;24497;24498;24499;24500;24501;24502;24503;24504;24505;24506 24497 12 ASLPTIELALK Unmodified 1154.6911 0.69107503 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 43.835 42.362 2;3 0.0017324 19732 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 91.867 64.033 17920000000 1740300000 1589900000 1473100000 4105000 4553200 5026800 2293100000 2276700000 2123700000 9193400 6499300 5597200 967820000 839920000 823340000 4167300 3116900 4570600 1176600000 1368500000 1198300000 0 2168300 0 2046 321 1977 39865;39866;39867;39868;39869;39870;39871;39872;39873;39874;39875;39876;39877;39878;39879;39880;39881;39882;39883;39884;39885;39886;39887;39888;39889;39890;39891 24507;24508;24509;24510;24511;24512;24513;24514;24515;24516;24517;24518;24519;24520;24521;24522 24521 15 ASLSAFDYLIR Unmodified 1254.6608 0.66083754 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 2 2 1 1 1 1 2 2 2 2 2 1 1 1 1 49.494 48.1 2;3 4.5764E-14 23680 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 203.29 192.06 3481800000 177080000 148600000 154380000 2171700 1829600 2095000 474560000 450680000 406690000 5065100 4366400 3501500 250480000 231560000 227520000 0 0 0 310360000 356050000 269300000 2114400 1492700 1928300 2047 1437 1978 39892;39893;39894;39895;39896;39897;39898;39899;39900;39901;39902;39903;39904;39905;39906;39907;39908;39909;39910;39911;39912;39913;39914;39915;39916;39917;39918;39919;39920 24523;24524;24525;24526;24527;24528;24529;24530;24531;24532;24533;24534;24535;24536;24537;24538;24539;24540 24527 18 ASLSGTQTIK Unmodified 1004.5502 0.55022446 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.322 14.061 2 0.00062696 4275 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.761 65.187 1765500000 207150000 164580000 162570000 4223500 3949800 3624600 244100000 240660000 220980000 8020300 5448200 6946600 90590000 90025000 77073000 0 0 0 87815000 74548000 69609000 0 3551700 0 2048 1662 1979 39921;39922;39923;39924;39925;39926;39927;39928;39929;39930;39931;39932;39933;39934;39935;39936;39937;39938;39939 24541;24542;24543;24544;24545;24546;24547;24548;24549;24550 24542 6 ASLTQSTTLFK Unmodified 1195.6449 0.64485312 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 29.504 28.052 2 0.0020647 9401 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 74.173 71.493 14276000 0 0 0 5225200 4886600 4164200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2049 152 1980 39940;39941;39942 24551;24552;24553 24553 3 ASLVWDEAQK Unmodified 1145.5717 0.57168818 1174 P21179 katE Catalase HPII yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 27.031 25.716 2 0.00062942 11957 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.601 88.412 447300000 0 103390000 101590000 0 0 0 65319000 77617000 79388000 0 0 1104400 16108000 0 0 0 0 0 2790800 0 0 0 0 0 2050 1174 1981 39943;39944;39945;39946;39947;39948;39949;39950 24554;24555;24556 24555 3 ASMDELR Unmodified 820.3749 0.37490263 1731 P69425 tatB Sec-independent protein translocase protein TatB yes yes 0 0 0 By MS/MS 1 14.7 15.654 2 0.10852 5008 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 53.351 27.243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2051 1731 1982 39951 24557 24557 1 ASNELAK Unmodified 731.38137 0.38136821 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 1 1 1 1 1 1 2 1 2 7.5763 8.4104 2 0.0031978 1613 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.98 11.51 592470000 126350000 1438600 102190000 514780 45821 612030 36824000 28941000 29506000 0 0 0 0 0 40793000 0 0 0 82707000 71754000 70802000 0 0 0 2052 29 1983 39952;39953;39954;39955;39956;39957;39958;39959;39960;39961;39962;39963;39964;39965;39966;39967;39968;39969;39970;39971 24558;24559;24560;24561;24562;24563;24564;24565;24566 24558 7 ASNGNLK Unmodified 702.36605 0.3660525 1637 P61316 lolA Outer-membrane lipoprotein carrier protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 1 1 2 2 2 2 2 1 1 2 1 10.556 10.894 2 0.12066 2319 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 50.12 32.849 1292400000 313120000 288880000 972610 0 0 0 106570000 144340000 91985000 49148000 49553000 45737000 0 0 0 38225000 56134000 43411000 0 0 846440 6090900 34375000 22976000 2053 1637 1984 39972;39973;39974;39975;39976;39977;39978;39979;39980;39981;39982;39983;39984;39985;39986;39987;39988;39989;39990;39991;39992;39993;39994;39995 24567;24568 24568 2 ASNQGEPVILDINADAGK Unmodified 1810.9061 0.9061062 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 2 2 36.911 35.277 2;3 5.0467E-14 16994 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 199.3 191.39 1567000000 156710000 129240000 115250000 12006000 13040000 11171000 86639000 111540000 105770000 40628000 40938000 35339000 99565000 89418000 95186000 8239300 8949100 11825000 122690000 103850000 127540000 14700000 13331000 13462000 2054 899 1985 39996;39997;39998;39999;40000;40001;40002;40003;40004;40005;40006;40007;40008;40009;40010;40011;40012;40013;40014;40015;40016;40017;40018;40019;40020;40021;40022;40023;40024;40025;40026;40027;40028;40029;40030;40031;40032;40033;40034;40035;40036;40037;40038;40039 24569;24570;24571;24572;24573;24574;24575;24576;24577;24578;24579;24580;24581;24582;24583;24584;24585;24586;24587;24588;24589;24590;24591;24592;24593;24594;24595;24596;24597;24598;24599;24600;24601 24589 33 ASNSTYKPLPQAGAFGEEVIVNSEY Unmodified 2670.2813 0.2813264 830 P0AE22 aphA Class B acid phosphatase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 1 2 2 2 2 2 2 2 2 2 1 46.442 44.938 2;3 1.4316E-06 22212 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 106.16 102.25 210730000 17450000 8632600 13934000 0 0 0 23427000 21811000 22111000 0 0 0 20645000 22773000 17960000 0 0 0 17191000 20262000 4531700 0 0 0 2055 830 1986 40040;40041;40042;40043;40044;40045;40046;40047;40048;40049;40050;40051;40052;40053;40054;40055;40056;40057;40058;40059;40060;40061 24602;24603;24604 24603 3 ASPHDDDKPILLPGEWEVNTR Unmodified 2388.171 0.17098809 1342 P30178 ybiC Uncharacterized oxidoreductase YbiC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 3 2 2 2 36.149 34.606 3;4 9.5844E-07 16726 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.551 89.444 867990000 158340000 141110000 106320000 0 0 0 85534000 78708000 86374000 0 0 0 31865000 29784000 30899000 0 0 0 36731000 39655000 42681000 0 0 0 2056 1342 1987 40062;40063;40064;40065;40066;40067;40068;40069;40070;40071;40072;40073;40074;40075;40076;40077;40078;40079;40080;40081;40082;40083;40084;40085;40086;40087 24605;24606;24607;24608;24609;24610;24611;24612;24613;24614;24615;24616;24617;24618 24611 14 ASPLLGEK Unmodified 813.45962 0.45961853 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.043 16.859 2 0.0016245 5864 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.29 87.935 452060000 132440000 130470000 122190000 0 0 0 15221000 12140000 11703000 0 0 0 4217300 2681400 3547900 0 0 0 5609000 6552900 5284200 0 0 0 2057 1816 1988 40088;40089;40090;40091;40092;40093;40094;40095;40096;40097;40098;40099 24619;24620;24621 24620 3 ASPSLLDGIVVEYYGTPTPLR Unmodified 2247.1787 0.17869923 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 54.51 53.053 2;3 1.6415E-75 25089 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 314.59 301.45 4785200000 522930000 514940000 500600000 0 0 0 362010000 333870000 365670000 0 0 0 220320000 196330000 372860000 0 0 0 547080000 416200000 432410000 0 0 0 2058 385 1989 40100;40101;40102;40103;40104;40105;40106;40107;40108;40109;40110;40111;40112;40113;40114;40115;40116;40117;40118;40119;40120;40121 24622;24623;24624;24625;24626;24627;24628;24629;24630;24631;24632;24633;24634;24635;24636;24637;24638;24639;24640 24638 19 ASPTLTFTDINR Unmodified 1334.683 0.68302954 1862 P76445 lpxT Lipid A 1-diphosphate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.157 32.619 2 0.029078 15582 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 64.374 54.087 117840000 0 0 0 919560 971340 1058300 10312000 12231000 12346000 0 2813300 5918600 16379000 18833000 0 1570200 1269900 0 19326000 0 0 4234900 4857100 4797600 2059 1862 1990 40122;40123;40124;40125;40126;40127;40128;40129;40130;40131;40132;40133;40134;40135;40136;40137 24641 24641 1 ASQGAHVGVVTVHPK Unmodified 1485.8052 0.80521036 1368 P31455 yidR Uncharacterized protein YidR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 11.98 12.806 3 0.15642 3626 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 15.514 13.607 131360000 15384000 15798000 18826000 0 0 0 15881000 9097900 13654000 0 0 0 5118900 8702100 8186200 0 0 0 10898000 0 9812900 0 0 0 2060 1368 1991 40138;40139;40140;40141;40142;40143;40144;40145;40146;40147;40148 24642 24642 1 ASQLDEAR Unmodified 888.43011 0.43010932 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 11.236 12.06 2 0.0010062 2919 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 113.91 48.128 445660000 52392000 53365000 44100000 0 0 0 0 44643000 49697000 0 0 0 50976000 45188000 0 0 0 0 54087000 51212000 0 0 0 0 2061 1649 1992 40149;40150;40151;40152;40153;40154;40155;40156;40157 24643;24644 24644 2 ASQLLDISLTK Unmodified 1187.6762 0.67615325 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.663 36.99 2 0.00020215 17188 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 104.22 86.982 161830000 13233000 7106300 8713300 0 0 0 12195000 15954000 12283000 0 0 0 12249000 11521000 9485000 0 0 0 23386000 19341000 16365000 0 0 0 2062 1230 1993 40158;40159;40160;40161;40162;40163;40164;40165;40166;40167;40168;40169 24645;24646;24647;24648;24649 24648 5 ASQNTLNAYGPMLPELLGGSADLAPSNLTIWK Unmodified 3341.6966 0.6965777 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 55.506 53.973 3 9.0502E-11 26945 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.59 107.58 149770000 51961000 0 43720000 0 0 0 17164000 20871000 16052000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2063 1423 1994 40170;40171;40172;40173;40174 24650 24650 1 ASQPSNIASQAEETPPPHY Unmodified 2022.9283 0.9282982 455 P0A8R4 slyX Protein SlyX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 1 2 2 2 26.093 24.981 2;3 2.7206E-14 11264 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 203.51 203.51 262000000 23291000 22886000 11642000 0 0 0 22081000 17797000 20170000 0 0 0 19609000 22849000 22732000 0 0 455560 24310000 26507000 27665000 0 0 0 2064 455 1995 40175;40176;40177;40178;40179;40180;40181;40182;40183;40184;40185;40186;40187;40188;40189;40190;40191;40192;40193;40194;40195;40196;40197;40198 24651;24652;24653;24654;24655;24656;24657;24658;24659;24660;24661;24662;24663;24664 24656 14 ASQVAILNANYIASR Unmodified 1589.8526 0.85255449 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.783 35.168 2 7.7369E-15 14162 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 213.73 209.72 697490000 0 47941000 0 9789300 11665000 10692000 0 105870000 110560000 16168000 15272000 12892000 0 0 0 6215800 3148300 2809500 110160000 102470000 100610000 9933700 10875000 10426000 2065 1409 1996 40199;40200;40201;40202;40203;40204;40205;40206;40207;40208;40209;40210;40211;40212;40213;40214;40215;40216 24665;24666;24667;24668;24669;24670;24671;24672;24673;24674;24675;24676;24677;24678;24679;24680;24681;24682 24668 18 ASSAIPGFYR Unmodified 1067.54 0.53999412 1538 P39407 yjjU Uncharacterized protein YjjU yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 29.554 27.709 2 0.00058961 13119 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 93.195 58.243 62029000 0 0 0 636830 498340 0 0 42575000 1866600 5625500 4852400 5347400 0 0 0 0 0 0 0 0 0 0 0 627590 2066 1538 1997 40217;40218;40219;40220;40221;40222;40223;40224 24683;24684;24685;24686 24686 4 ASSDHLVR Unmodified 883.45118 0.45117911 1496;1308 P27830;P37759 rffG;rfbB dTDP-glucose 4,6-dehydratase 2;dTDP-glucose 4,6-dehydratase 1 no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.431 11.247 2 4.8787E-06 2581 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 180.01 40.466 1152200000 61029000 63755000 57121000 0 0 0 90057000 86000000 93283000 0 0 0 105280000 96107000 87884000 0 0 0 151980000 133310000 126360000 0 0 0 2067 1308;1496 1998 40225;40226;40227;40228;40229;40230;40231;40232;40233;40234;40235;40236 24687;24688;24689;24690;24691;24692;24693;24694 24687 8 ASSDLQLVPIR Unmodified 1197.6717 0.67173657 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 35.578 33.983 3 0.021234 15573 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 46.844 39.87 37855000 0 0 0 0 0 0 2872000 2191900 0 0 0 0 4143100 3924100 4135900 0 0 0 7960300 6280300 6347300 0 0 0 2068 1124 1999 40237;40238;40239;40240;40241;40242;40243;40244 24695;24696 24696 2 ASSFYEEK Unmodified 959.42363 0.42362696 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 14.146 14.829 2 0.014409 3876 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 71.877 71.187 37322000 0 0 3463400 5300800 4756400 6024800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5721700 6700600 5354400 2069 1933 2000 40245;40246;40247;40248;40249;40250;40251 24697 24697 1 ASSGLNEDEIQK Unmodified 1289.6099 0.60992418 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 15.232 15.784 2 1.1038E-16 4218 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 204.07 198.11 10326000000 869170000 761260000 712530000 74835000 66742000 69918000 797780000 832000000 0 399590000 389160000 391070000 718930000 663770000 686540000 35632000 21241000 24317000 807430000 770050000 894360000 106800000 117130000 115350000 2070 293 2001 40252;40253;40254;40255;40256;40257;40258;40259;40260;40261;40262;40263;40264;40265;40266;40267;40268;40269;40270;40271;40272;40273;40274;40275;40276;40277 24698;24699;24700;24701;24702;24703;24704;24705;24706;24707;24708;24709;24710;24711;24712;24713;24714;24715;24716 24705 13 ASSGTTSTR Unmodified 866.40937 0.40937388 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 6.1963 6.9468 2 2.7909E-05 1159 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.71 154.71 36852000 11823000 13380000 11519000 0 0 0 0 0 130190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2071 173 2002 40278;40279;40280;40281 24717;24718;24719 24719 3 ASSGVYQDK Unmodified 953.44543 0.44542503 901 P0AF03 mog Molybdopterin adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.631 11.476 2 0.00016784 2686 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.52 106.37 173330000 34845000 0 27361000 0 0 0 0 0 0 0 0 0 23118000 21903000 0 0 0 0 29263000 19943000 16893000 0 0 0 2072 901 2003 40282;40283;40284;40285;40286;40287;40288;40289;40290 24720;24721;24722;24723 24721 4 ASSIEHDGQAMFAGLTNPLPVAR Unmodified 2381.1798 0.17977864 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 45.11 43.731 3 1.9968E-06 21399 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.128 87.051 163660000 49350000 52503000 51001000 2463500 3560400 4778600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2073 48 2004 40291;40292;40293;40294;40295;40296 24724;24725;24726 24724 3 ASSLVFDSVEAK Unmodified 1251.6347 0.63468237 130 P06721 metC Cystathionine beta-lyase MetC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.552 29.168 2 2.2979E-06 14053 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 142.83 134.61 354130000 33916000 42893000 33673000 646800 0 768650 40822000 38925000 36797000 0 0 0 18791000 18213000 17551000 0 0 0 22809000 24725000 23601000 0 0 0 2074 130 2005 40297;40298;40299;40300;40301;40302;40303;40304;40305;40306;40307;40308;40309;40310 24727;24728;24729;24730;24731;24732;24733;24734;24735;24736;24737;24738 24727 12 ASSNLIK Unmodified 731.41775 0.41775372 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 11.918 12.757 2 0.0096264 3570 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 81.297 38.297 1077600000 103160000 0 0 0 764850 849460 120660000 0 101960000 0 0 0 129370000 97388000 79430000 0 0 339690 116730000 115700000 211290000 0 0 0 2075 1024 2006 40311;40312;40313;40314;40315;40316;40317;40318;40319;40320;40321;40322;40323;40324 24739;24740;24741;24742;24743;24744;24745;24746;24747;24748 24745 10 ASSVVNTAFEQR Unmodified 1307.647 0.64697839 1389 P32144 yihW Uncharacterized HTH-type transcriptional regulator YihW yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 22.508 21.974 2 1.2682E-11 9259 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 183.67 171.38 44764000 10824000 9110900 11216000 0 0 0 3720800 0 0 0 0 0 0 0 0 0 0 0 5777800 1730900 2384900 0 0 0 2076 1389 2007 40325;40326;40327;40328;40329;40330;40331 24749;24750;24751;24752 24751 4 ASTAMEK Oxidation (M) 752.33745 0.33745449 822 P0ADZ0 rplW 50S ribosomal protein L23 yes yes 0 1 0 By MS/MS 1 5.7721 6.5193 2 0.1378 1057 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 52.403 45.278 3685200 0 0 3685200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2077 822 2008 40332 24753 24753 1 ASTFTSDTLPADHK Unmodified 1489.7049 0.7048872 1772 P75791 ybiU Uncharacterized protein YbiU yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 1 2 1 1 2 1 2 2 2 17.119 17.838 2;3 2.8182E-05 6472 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.403 85.386 167820000 18380000 21447000 14659000 0 0 0 20942000 13910000 0 0 0 0 6885500 7863100 6584400 0 0 0 19672000 19807000 17666000 0 0 0 2078 1772 2009 40333;40334;40335;40336;40337;40338;40339;40340;40341;40342;40343;40344;40345;40346;40347;40348;40349;40350 24754;24755;24756 24754 2 ASTISNVVR Unmodified 945.52434 0.52434406 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.509 16.057 2 8.0962E-08 5332 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 187.34 137.75 7735900000 274860000 232560000 187570000 52326000 49377000 49150000 746940000 719150000 595810000 205030000 189230000 185700000 551450000 433700000 552470000 29773000 25602000 24165000 726230000 720080000 715330000 156760000 154620000 157990000 2079 645 2010 40351;40352;40353;40354;40355;40356;40357;40358;40359;40360;40361;40362;40363;40364;40365;40366;40367;40368;40369;40370;40371;40372;40373;40374 24757;24758;24759;24760;24761;24762;24763;24764;24765;24766;24767;24768;24769;24770;24771;24772;24773;24774;24775 24767 19 ASTMGDR Unmodified 736.31739 0.31738775 317 P0A784 orn Oligoribonuclease yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 2 5.008 5.9024 2 0.015409 1245 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 81.784 51.115 189180000 0 0 0 0 0 0 23811000 18864000 21427000 0 0 0 21026000 18138000 16475000 0 0 0 23117000 20969000 25353000 0 0 0 2080 317 2011 40375;40376;40377;40378;40379;40380;40381;40382;40383;40384 24776;24777;24778;24779 24777 4 ASTPAQR Unmodified 729.37695 0.37695154 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 10.222 10.417 2 0.062312 1791 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 60.788 4.2466 24152000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 710860 0 0 0 5021500 8273900 10146000 2081 938 2012 40385;40386;40387;40388 24780 24780 1 ASTPLGVGGFGAAR Unmodified 1259.6622 0.66223452 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 30.887 29.499 2;3 2.1688E-06 13623 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.48 71.063 6297200000 327360000 311280000 253930000 1982200 2316200 2120400 617740000 573190000 625510000 3092100 2936700 2865600 643730000 530770000 504480000 1067800 811540 820270 607160000 654130000 624430000 1909800 1885600 1724200 2082 596 2013 40389;40390;40391;40392;40393;40394;40395;40396;40397;40398;40399;40400;40401;40402;40403;40404;40405;40406;40407;40408;40409;40410;40411;40412;40413;40414;40415;40416;40417;40418;40419;40420;40421;40422;40423 24781;24782;24783;24784;24785;24786;24787;24788;24789;24790;24791;24792;24793;24794;24795 24789 12 ASTPMYLMSR Unmodified 1155.5417 0.54165038 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.548 28.101 2 0.13659 12885 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 38.303 33.764 352910000 34055000 52841000 43734000 0 0 841280 53616000 80087000 57635000 3039200 0 2992500 7236800 8056900 8779100 0 0 0 0 0 0 0 0 0 2083 1191 2014 40424;40425;40426;40427;40428;40429;40430;40431;40432;40433;40434;40435 24796 24796 1 ASTSINVPDPTPFVTYF Unmodified 1854.904 0.90398093 756 P0ACY1 ydjA Putative NAD(P)H nitroreductase YdjA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.721 54.29 2 0.010115 25729 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 52.247 24.766 207950000 18646000 18995000 19572000 0 0 691310 25435000 0 0 0 2011900 0 19083000 18058000 19350000 0 0 0 21363000 23902000 20842000 0 0 0 2084 756 2015 40436;40437;40438;40439;40440;40441;40442;40443;40444;40445;40446;40447 24797 24797 1 ASTWLNHFDADSLR Unmodified 1631.7692 0.76921879 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 3 1 1 1 2 2 2 2 2 2 1 1 1 36.266 34.562 2;3 1.9264E-19 16609 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 205.8 196.85 2652900000 221800000 219900000 210650000 933100 629190 688590 231070000 227900000 200800000 4329000 2708000 2063800 195520000 204860000 189260000 0 0 0 240290000 242640000 250660000 2719300 2067400 1444600 2085 60 2016 40448;40449;40450;40451;40452;40453;40454;40455;40456;40457;40458;40459;40460;40461;40462;40463;40464;40465;40466;40467;40468;40469;40470;40471;40472;40473;40474;40475;40476;40477;40478;40479;40480;40481 24798;24799;24800;24801;24802;24803;24804;24805;24806;24807;24808;24809;24810;24811;24812;24813;24814;24815;24816;24817;24818;24819;24820;24821;24822;24823;24824 24808 26 ASVDAILK Unmodified 815.47527 0.4752686 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.672 22.892 2 0.0071836 7825 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 83.753 25.585 626480000 16515000 15854000 17450000 4426100 4612300 0 75300000 74323000 72065000 24250000 22274000 20654000 41719000 35476000 33007000 5060200 3217100 2668700 44301000 45808000 39298000 10681000 10840000 6677500 2086 633 2017 40482;40483;40484;40485;40486;40487;40488;40489;40490;40491;40492;40493;40494;40495;40496;40497;40498;40499;40500;40501;40502;40503;40504 24825;24826;24827;24828;24829;24830;24831;24832;24833;24834;24835;24836;24837;24838;24839;24840;24841;24842;24843;24844;24845;24846 24833 22 ASVEDWETMIDTNNK Unmodified 1751.7672 0.76722946 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 43.378 41.827 2;3 1.0186E-27 20340 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 322.79 322.79 2003000000 198990000 195810000 181090000 1866100 0 777160 205920000 201670000 169220000 0 0 1312400 132080000 126480000 132810000 0 0 0 154090000 150660000 150190000 0 0 0 2087 1545 2018 40505;40506;40507;40508;40509;40510;40511;40512;40513;40514;40515;40516;40517;40518;40519;40520;40521;40522;40523;40524;40525;40526;40527;40528;40529;40530;40531 24847;24848;24849;24850;24851;24852;24853;24854;24855;24856;24857;24858;24859;24860 24853 14 ASVEIDR Unmodified 788.40283 0.40283194 354 P0A7L3 rplT 50S ribosomal protein L20 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.888 13.577 2 0.0035119 4065 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.67 69.54 2984700000 324520000 353900000 339900000 6786900 6775800 4755700 193070000 7686200 183740000 10937000 11880000 0 229240000 179890000 201960000 5235900 0 5639300 314190000 307550000 285940000 11146000 0 0 2088 354 2019 40532;40533;40534;40535;40536;40537;40538;40539;40540;40541;40542;40543;40544;40545;40546;40547;40548;40549;40550;40551 24861;24862;24863;24864;24865;24866;24867;24868;24869;24870 24867 9 ASVEIDRK Unmodified 916.49779 0.49779495 354 P0A7L3 rplT 50S ribosomal protein L20 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 1 1 1 10.957 11.586 2 0.00012544 2359 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 161.12 60.731 2072600000 234300000 218630000 211630000 27849000 28303000 29835000 84072000 62341000 69090000 50526000 38300000 43636000 107230000 85748000 73002000 49643000 42443000 45047000 142590000 145760000 153040000 42443000 40873000 46252000 2089 354 2020 40552;40553;40554;40555;40556;40557;40558;40559;40560;40561;40562;40563;40564;40565;40566;40567;40568;40569;40570;40571;40572;40573;40574;40575;40576;40577;40578;40579 24871;24872;24873;24874;24875;24876;24877;24878;24879;24880;24881;24882;24883;24884;24885;24886;24887;24888;24889;24890 24879 20 ASVESNFALR Unmodified 1092.5564 0.55637247 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 25.615 24.477 2 1.5138E-07 9163 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 178.83 154.68 734270000 23342000 21639000 19953000 20361000 17668000 17826000 52049000 51190000 82705000 15087000 16991000 17661000 40961000 40836000 34054000 4303800 0 3175100 67830000 63462000 68711000 17555000 16580000 20335000 2090 1427 2021 40580;40581;40582;40583;40584;40585;40586;40587;40588;40589;40590;40591;40592;40593;40594;40595;40596;40597;40598;40599;40600;40601;40602;40603;40604;40605 24891;24892;24893;24894;24895;24896;24897;24898;24899;24900;24901;24902;24903;24904;24905;24906 24894 16 ASVGAPPMSVPHIDTR Unmodified 1633.8246 0.82462518 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 2 1 1 1 1 2 1 1 1 1 2 1 1 2 2 2 2 2 2 29.292 27.956 2;3 1.1634E-08 10265 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 102.64 95.908 405830000 7009200 6677500 10699000 3895200 4142300 4047400 13046000 13620000 11506000 10916000 10261000 10588000 12032000 15640000 14206000 7289000 3972800 4949800 52582000 49069000 47105000 28354000 30858000 33363000 2091 1435 2022 40606;40607;40608;40609;40610;40611;40612;40613;40614;40615;40616;40617;40618;40619;40620;40621;40622;40623;40624;40625;40626;40627;40628;40629;40630;40631;40632;40633;40634;40635;40636;40637;40638;40639;40640 24907;24908;24909;24910;24911;24912;24913;24914;24915;24916;24917;24918;24919;24920;24921 24914 15 ASVIDTATNAAPGTILEANK Unmodified 1956.0164 0.016384931 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 38.548 36.853 2;3 3.8253E-37 18118 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 227.47 225.64 619890000 38261000 19162000 19257000 0 0 0 68076000 75248000 62638000 0 0 0 49340000 47798000 54957000 0 0 0 65748000 60271000 59133000 0 0 0 2092 1224 2023 40641;40642;40643;40644;40645;40646;40647;40648;40649;40650;40651;40652;40653;40654;40655;40656;40657;40658;40659;40660;40661;40662 24922;24923;24924;24925;24926;24927;24928;24929;24930;24931;24932;24933;24934;24935;24936 24924 15 ASVQGEDGR Unmodified 917.42027 0.42027292 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 3 2 2 6.7078 7.5463 2 4.5977E-05 1402 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 150.05 117.7 641790000 133610000 134780000 132910000 0 0 0 0 1256900 0 0 0 0 49485000 37200000 53554000 0 0 0 38489000 29980000 30526000 0 0 0 2093 1120 2024 40663;40664;40665;40666;40667;40668;40669;40670;40671;40672;40673;40674;40675;40676;40677;40678;40679;40680 24937;24938;24939;24940;24941;24942;24943;24944;24945;24946;24947;24948;24949 24948 11 ASVQLQNVTK Unmodified 1086.6033 0.60332266 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.82 17.32 2 0.00022777 4901 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 118.71 101.47 932370000 6229100 7219600 4755400 0 1987500 3708200 79602000 77074000 64103000 79086000 0 27183000 78629000 70449000 58177000 15361000 10206000 10595000 106970000 103940000 90343000 15307000 11053000 10402000 2094 1718 2025 40681;40682;40683;40684;40685;40686;40687;40688;40689;40690;40691;40692;40693;40694;40695;40696;40697;40698;40699;40700;40701;40702 24950;24951;24952;24953;24954;24955;24956;24957;24958;24959 24950 10 ASWLAEVEEMR Unmodified 1319.618 0.61798644 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.72 45.33 2 1.3631E-05 21156 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 169.09 117.23 480260000 49545000 56071000 52023000 0 0 0 41490000 40765000 42030000 0 0 0 25205000 22799000 21797000 0 0 0 44144000 47159000 37230000 0 0 0 2095 91 2026 40703;40704;40705;40706;40707;40708;40709;40710;40711;40712;40713;40714 24960;24961;24962;24963;24964;24965;24966;24967;24968 24967 9 ASWVGDYNEPSTFLTLLTSTHSGNISR Unmodified 2952.4254 0.42536488 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.166 52.726 3 1.7571E-22 25794 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160 157.92 352490000 31053000 26509000 25103000 0 0 0 31061000 28686000 28996000 0 0 0 23380000 26490000 28726000 0 0 0 33597000 31125000 37766000 0 0 0 2096 1900 2027 40715;40716;40717;40718;40719;40720;40721;40722;40723;40724;40725;40726 24969;24970;24971;24972;24973;24974 24973 6 ASYLGER Unmodified 794.39227 0.39226725 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.429 14.096 2 0.0019731 4326 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.52 95.439 815220000 13526000 10560000 13166000 0 0 0 11730000 11504000 178120000 4684800 2991700 3485400 125060000 134730000 0 0 0 0 102310000 103750000 99601000 0 0 0 2097 1805 2028 40727;40728;40729;40730;40731;40732;40733;40734;40735;40736;40737;40738;40739;40740 24975;24976 24975 2 ASYNVEGAFQASNK Unmodified 1484.6896 0.68957148 778 P0ADA5 yajG Uncharacterized lipoprotein YajG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.8 24.591 2 0.0003655 9194 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 77.597 67.592 85990000 4837800 5422100 0 1823900 0 0 0 0 3922800 3945300 3803300 3283000 5935900 4887300 5138000 0 0 0 12596000 13449000 11116000 2599600 3229700 0 2098 778 2029 40741;40742;40743;40744;40745;40746;40747;40748;40749;40750;40751;40752;40753;40754;40755 24977 24977 1 ASYSGFTLVLDSQQVEEGKR Unmodified 2213.0964 0.096426166 1123 P16681 phnB Protein PhnB yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 39.171 37.404 3 0.0031812 18176 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 53.359 48.149 170660000 50712000 35732000 43913000 0 0 0 11715000 11168000 10910000 0 0 0 0 0 0 0 0 0 3617300 2892100 0 0 0 0 2099 1123 2030 40756;40757;40758;40759;40760;40761;40762;40763 24978 24978 1 ASYTLTEPQLTAPLKK Unmodified 1759.972 0.97200092 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 2 1 1 2 2 2 2 2 2 31.001 29.53 2;3 4.2825E-08 11651 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 117.98 104.31 509970000 25427000 23024000 15456000 10316000 8837600 8340100 42158000 46488000 44329000 27233000 29075000 32293000 25094000 19918000 20209000 4960600 3672600 3995200 28595000 29047000 29337000 10664000 11713000 9793700 2100 189 2031 40764;40765;40766;40767;40768;40769;40770;40771;40772;40773;40774;40775;40776;40777;40778;40779;40780;40781;40782;40783;40784;40785;40786;40787;40788;40789;40790;40791;40792;40793;40794;40795;40796;40797;40798;40799;40800;40801;40802;40803;40804;40805;40806;40807 24979;24980;24981;24982;24983;24984;24985;24986;24987;24988;24989;24990;24991;24992;24993;24994;24995;24996;24997;24998;24999;25000 24980 22 ASYTMEFLK Unmodified 1088.5212 0.52123251 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 35.167 33.642 1;2 8.7956E-05 16511 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.36 133.4 15771000000 1405800000 1270900000 1116100000 8348600 7342300 7596100 1189400000 1156200000 1236700000 5624200 8172100 7998800 1160900000 1014000000 1009300000 6481700 4828100 4499500 1722000000 1721300000 1689800000 6629800 5883000 5175700 2101 264 2032 40808;40809;40810;40811;40812;40813;40814;40815;40816;40817;40818;40819;40820;40821;40822;40823;40824;40825;40826;40827;40828;40829;40830;40831;40832;40833;40834;40835;40836;40837;40838 25001;25002;25003;25004;25005;25006;25007;25008;25009;25010;25011;25012;25013;25014;25015;25016;25017;25018;25019;25020;25021;25022;25023 25001 22 ASYTMEFLK Oxidation (M) 1104.5161 0.51614714 264 P0A6M8 fusA Elongation factor G yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 2 2 2 2 2 29.623 28.375 2 0.003247 11194 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 84.743 77.919 209230000 16765000 15434000 12782000 0 0 0 15031000 17047000 12602000 0 0 0 11183000 17575000 17929000 0 0 0 22136000 25291000 25453000 0 0 0 2102 264 2032 40839;40840;40841;40842;40843;40844;40845;40846;40847;40848;40849;40850;40851;40852;40853;40854;40855;40856 25024;25025;25026;25027;25028;25029;25030;25031 25030 110 5 ASYTMEFLKYDEAPSNVAQAVIEAR Unmodified 2802.3534 0.35344549 264 P0A6M8 fusA Elongation factor G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 50.371 49.09 3 3.3411E-15 17687 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 137.52 134.64 78585000 0 0 0 11521000 9150000 10504000 0 0 0 10295000 7585600 10258000 0 0 0 0 0 3470400 0 0 0 8068600 7732700 0 2103 264 2033 40857;40858;40859;40860;40861;40862;40863;40864;40865 25032;25033;25034;25035;25036;25037;25038;25039;25040 25038 9 ASYVLNSSELHAPLQK Unmodified 1755.9155 0.91554867 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 29.377 28.006 2;3 1.4811E-08 12984 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 147.87 141.89 851550000 28298000 28421000 22721000 9451600 8772300 8976500 58238000 53914000 56364000 34916000 36455000 24572000 47404000 48867000 45148000 11131000 7640200 7700700 69196000 82212000 85450000 24908000 24374000 26421000 2104 844 2034 40866;40867;40868;40869;40870;40871;40872;40873;40874;40875;40876;40877;40878;40879;40880;40881;40882;40883;40884;40885;40886;40887;40888;40889;40890;40891;40892;40893;40894;40895;40896;40897;40898;40899;40900;40901;40902;40903;40904;40905;40906;40907;40908;40909;40910 25041;25042;25043;25044;25045;25046;25047;25048;25049;25050;25051;25052;25053;25054;25055;25056;25057;25058;25059;25060;25061;25062;25063;25064;25065;25066;25067 25056 24 ASYVTGSFIDLAGGK Unmodified 1484.7511 0.75110911 1599 P52037 ygfF Uncharacterized oxidoreductase YgfF yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 43.023 40.97 2 4.7798E-05 20307 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.85 90.334 35728000 0 0 0 0 0 0 8667300 8228500 7560200 0 0 0 0 0 0 0 0 0 11272000 0 0 0 0 0 2105 1599 2035 40911;40912;40913;40914 25068 25068 1 ATAAEVFGLPLETVTSEQR Unmodified 2018.032 0.032034995 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 51.358 50.332 2;3 6.3982E-74 23673 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 283.19 267.05 942150000 88991000 81601000 69318000 0 423710 405870 93127000 80820000 86050000 0 1503300 1822000 22756000 55614000 56507000 23687000 11325000 13282000 83714000 88669000 82529000 0 0 0 2106 37 2036 40915;40916;40917;40918;40919;40920;40921;40922;40923;40924;40925;40926;40927;40928;40929;40930;40931;40932;40933;40934;40935;40936;40937;40938;40939;40940;40941;40942;40943;40944;40945;40946;40947;40948 25069;25070;25071;25072;25073;25074;25075;25076;25077;25078;25079;25080;25081;25082;25083;25084;25085;25086;25087;25088;25089;25090;25091;25092 25089 23 ATAALLTEK Unmodified 916.52295 0.52294707 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.618 18.3 2 0.00037707 6975 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.82 102.35 174730000 17434000 20523000 21471000 0 0 0 18730000 19743000 18122000 0 0 0 7643400 10674000 6884300 0 0 0 9490700 13208000 10804000 0 0 0 2107 1758 2037 40949;40950;40951;40952;40953;40954;40955;40956;40957;40958;40959;40960 25093;25094;25095 25093 3 ATAAMMVPFDSIK Unmodified 1380.6781 0.67814386 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 43.191 41.343 2 1.9886E-05 16619 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 133.89 120.12 140510000 24991000 23930000 24535000 8977300 9642000 8556000 0 0 0 15183000 15325000 0 0 0 0 0 0 0 0 0 0 9375500 0 0 2108 1829 2038 40961;40962;40963;40964;40965;40966;40967;40968;40969 25096;25097;25098;25099 25096 4 ATADYEVTR Unmodified 1024.4825 0.48253882 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.905 14.38 2 3.6612E-05 4535 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.47 135.5 669240000 20250000 20980000 16349000 0 0 0 81821000 67266000 68802000 41798000 26784000 17644000 42270000 0 0 2973400 5043000 4243600 72254000 66234000 67507000 20649000 13159000 13214000 2109 648 2039 40970;40971;40972;40973;40974;40975;40976;40977;40978;40979;40980;40981;40982;40983;40984;40985;40986;40987;40988 25100;25101;25102;25103;25104;25105;25106;25107;25108;25109 25103 10 ATAIDPSVVGEDGVYHHTGR Unmodified 2079.9974 0.99738082 1920 P77596 yagF Uncharacterized protein YagF yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 22.711 22.408 4 0.090559 9484 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 29.476 27.596 31481000 10986000 11550000 8944500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2110 1920 2040 40989;40990;40991 25110 25110 1 ATAIWMSFDK Unmodified 1168.5587 0.55868065 39 P00803 lepB Signal peptidase I yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.294 40.466 2 0.084927 19723 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 53.756 50.348 83767000 2864600 2656000 2591800 0 0 0 7108000 8107600 7323400 1249200 0 1602800 7863500 7352300 7251900 0 0 0 9751100 9401400 8642900 0 0 0 2111 39 2041 40992;40993;40994;40995;40996;40997;40998;40999;41000;41001;41002;41003;41004;41005 25111 25111 0 ATALILDKDDVVQLR Unmodified 1668.941 0.94103514 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 2 2 2 2 2 2 2 2 1 1 36.69 34.816 2;3 1.0974E-08 13730 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 158.05 146.51 254280000 18026000 14586000 9497500 5244400 5951300 5133900 42333000 37307000 45793000 23194000 18892000 22636000 0 0 3038500 0 0 0 2643400 0 0 0 0 0 2112 1477 2042 41006;41007;41008;41009;41010;41011;41012;41013;41014;41015;41016;41017;41018;41019;41020;41021;41022;41023;41024;41025;41026;41027;41028;41029;41030 25112;25113;25114;25115;25116;25117;25118 25113 5 ATAVAIHGK Unmodified 866.4974 0.49740102 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.742 11.574 2 0.091505 2663 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 50.703 39.785 118030000 0 0 15623000 0 0 0 25974000 18393000 19297000 0 0 0 0 2613600 2313100 0 0 0 1928700 4188800 27698000 0 0 0 2113 1509 2043 41031;41032;41033;41034;41035;41036;41037;41038;41039 25119 25119 0 ATCVFAEPQFR Unmodified 1324.6234 0.62340617 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.616 31.276 2 0.0017792 14600 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.913 69.474 255590000 17249000 19580000 15506000 0 0 0 17343000 22556000 21602000 0 0 0 19643000 16794000 19662000 0 0 0 26778000 28811000 30067000 0 0 0 2114 1509 2044 41040;41041;41042;41043;41044;41045;41046;41047;41048;41049;41050;41051 25120;25121;25122 25122 1 ATCVFAEPQFRPAVVESVAR Unmodified 2233.1314 0.13137188 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.739 36.998 3 9.5607E-11 17993 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 130.11 121.63 432580000 25911000 20514000 21733000 0 0 0 34399000 30099000 25827000 0 690220 0 33976000 32486000 34486000 0 0 0 66200000 58583000 47677000 0 0 0 2115 1509 2045 41052;41053;41054;41055;41056;41057;41058;41059;41060;41061;41062;41063;41064 25123;25124;25125;25126;25127;25128 25126 6 ATDALCNYDGPQGK Unmodified 1508.6566 0.6565568 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 16.662 17.242 2;3 2.4738E-26 7522 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 229.73 224.63 484810000 58345000 52259000 45736000 3629400 2633900 4606800 40135000 36050000 31807000 2080600 1907000 2923600 16695000 15673000 11809000 0 0 0 54191000 48951000 48838000 2688500 1898600 1954500 2116 198 2046 41065;41066;41067;41068;41069;41070;41071;41072;41073;41074;41075;41076;41077;41078;41079;41080;41081;41082;41083;41084;41085;41086;41087;41088;41089;41090;41091;41092;41093;41094;41095;41096;41097;41098;41099;41100 25129;25130;25131;25132;25133;25134;25135;25136;25137;25138;25139;25140;25141 25134 13 ATDAVIAPR Unmodified 912.50288 0.50288033 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 15.255 15.956 2 1.5514E-05 5428 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 159.2 144.41 1287900000 364700000 308630000 253290000 0 0 0 117540000 113620000 104690000 0 0 0 0 0 0 0 0 0 25447000 0 0 0 0 0 2117 1007 2047 41101;41102;41103;41104;41105;41106;41107;41108 25142;25143;25144;25145;25146 25143 5 ATDDHNKR Unmodified 955.44716 0.44715637 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 2 3 1 1 1 1 1 2.6191 3.4661 1;2 8.0646E-06 464 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 177.71 138.16 275090000 95992000 87134000 81613000 0 0 0 0 0 0 0 0 0 506740 439640 0 0 0 0 2839700 3041500 3520300 0 0 0 2118 1219 2048 41109;41110;41111;41112;41113;41114;41115;41116;41117;41118;41119;41120;41121 25147;25148;25149;25150;25151;25152;25153;25154;25155 25151 9 ATDELIAAVTAHWR Unmodified 1552.7998 0.79979063 1037 P0C0K3 rdoA Protein RdoA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.491 42.976 3 4.8767E-06 20962 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.866 94.372 93202000 10101000 8820200 6904900 0 0 0 6770400 6159400 6641700 0 0 0 9325100 7578000 5764400 0 0 0 9368600 8100000 7668100 0 0 0 2119 1037 2049 41122;41123;41124;41125;41126;41127;41128;41129;41130;41131;41132;41133 25156;25157;25158;25159;25160;25161;25162;25163;25164 25160 9 ATDGHVAWLGK Unmodified 1153.588 0.58800695 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 1 1 1 1 2 2 1 1 2 2 2 1 2 2 19.654 19.988 2;3 4.1275E-05 5799 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 131.06 117.48 861900000 114540000 110660000 77340000 34837000 41329000 49088000 52038000 43823000 37531000 18085000 18310000 12747000 21592000 29514000 25538000 4405000 3137700 0 49691000 45437000 44904000 7198000 11410000 8749200 2120 1935 2050 41134;41135;41136;41137;41138;41139;41140;41141;41142;41143;41144;41145;41146;41147;41148;41149;41150;41151;41152;41153;41154;41155;41156;41157;41158;41159;41160;41161;41162;41163;41164;41165;41166;41167;41168;41169;41170;41171 25165;25166;25167;25168;25169;25170;25171;25172;25173;25174;25175;25176;25177;25178;25179;25180;25181;25182;25183;25184;25185;25186 25179 22 ATDIAHNCGLQQVNR Unmodified 1695.8111 0.81110038 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 2 2 2 1 2 15.136 15.984 2;3 1.8456E-35 5357 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 253.97 247.32 626050000 184350000 164270000 148840000 979290 718860 744840 5249300 3184700 3846100 0 0 0 24362000 22431000 23337000 0 0 0 6545100 37188000 0 0 0 0 2121 1107 2051 41172;41173;41174;41175;41176;41177;41178;41179;41180;41181;41182;41183;41184;41185;41186;41187;41188;41189;41190;41191;41192 25187;25188;25189;25190;25191;25192;25193;25194 25189 8 ATDIQLAENMGITGLR Unmodified 1701.872 0.8719693 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.064 43.399 2 1.2993E-30 21303 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 231.66 216.88 142800000 14853000 12598000 14213000 2267700 1810500 2035000 13948000 10775000 12070000 2848000 2332100 0 9806300 7819200 8133300 0 0 0 7712500 7707300 7319000 2835500 1712600 0 2122 139 2052 41193;41194;41195;41196;41197;41198;41199;41200;41201;41202;41203;41204;41205;41206;41207;41208;41209;41210;41211 25195;25196;25197;25198;25199;25200;25201;25202;25203;25204;25205;25206 25201 12 ATDLFLK Unmodified 806.4538 0.45380487 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.46 26.313 2 0.0066056 11915 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.777 66.248 1711200000 233690000 230050000 217070000 0 0 0 164400000 154330000 141760000 0 0 0 88305000 79313000 77257000 0 0 0 104090000 113170000 107790000 0 0 0 2123 43 2053 41212;41213;41214;41215;41216;41217;41218;41219;41220;41221;41222;41223 25207;25208;25209;25210;25211;25212;25213;25214;25215;25216;25217;25218 25212 12 ATDLVLAFLPFEK Unmodified 1462.8072 0.80716742 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.229 53.751 2 5.2323E-05 21629 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 93.258 87.534 120940000 0 9864700 0 0 4162300 0 5810000 7136800 7746300 8462400 10427000 8803000 6973600 7632600 5294300 0 0 0 10653000 9048900 9828600 0 4278700 4816200 2124 1058 2054 41224;41225;41226;41227;41228;41229;41230;41231;41232;41233;41234;41235;41236;41237;41238;41239 25219 25219 1 ATDPSGIVENEVCPVFAAR Unmodified 2030.9731 0.97313991 1955 Q46822 idi Isopentenyl-diphosphate Delta-isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.367 42.852 2 2.4507E-22 20903 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 228.8 214.84 78504000 11304000 11767000 11030000 0 0 0 7236300 4347800 6233300 0 0 0 3852300 3850400 3873000 0 0 0 5441000 4194700 5374000 0 0 0 2125 1955 2055 41240;41241;41242;41243;41244;41245;41246;41247;41248;41249;41250;41251 25220;25221;25222;25223 25222 4 ATDTLTHATAHAHEHGHHDAGGTK Unmodified 2472.1279 0.1278945 662 P0ABJ3 cyoC Cytochrome bo(3) ubiquinol oxidase subunit 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 10.213 11.067 4 0.00016388 2497 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 72.676 69.579 67845000 3260800 0 3443900 0 0 0 0 0 0 0 0 0 5713800 7007400 5324100 0 0 0 17509000 12225000 13361000 0 0 0 2126 662 2056 41252;41253;41254;41255;41256;41257;41258;41259 25224 25224 1 ATEAAVSEEFGLAPFLPDQIHFVHSQELLSR Unmodified 3437.7256 0.72556964 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 2 2 1 2 2 1 1 2 2 1 52.502 51.19 3;4 3.0985E-55 25398 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 243.92 243.01 2103300000 35150000 45044000 33118000 5106800 4975200 6773000 555460000 571720000 569270000 20140000 12757000 17948000 16061000 8236700 7434400 0 0 0 89410000 87772000 16892000 0 0 0 2127 64 2057 41260;41261;41262;41263;41264;41265;41266;41267;41268;41269;41270;41271;41272;41273;41274;41275;41276;41277;41278;41279;41280;41281;41282;41283;41284;41285 25225;25226;25227;25228;25229;25230;25231;25232;25233;25234 25227 10 ATEALFK Unmodified 778.4225 0.42250475 474 P0A8Z0 yciA Acyl-CoA thioester hydrolase YciA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 2 2 3 1 1 2 2 2 1 2 2 2 18.575 19.169 1;2 0.017862 7225 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.307 53.198 274600000 24742000 25001000 21239000 0 0 0 3972200 3621200 31416000 0 0 0 29988000 26110000 2910400 0 0 0 33500000 35006000 37092000 0 0 0 2128 474 2058 41286;41287;41288;41289;41290;41291;41292;41293;41294;41295;41296;41297;41298;41299;41300;41301;41302;41303;41304;41305;41306;41307 25235;25236;25237;25238;25239;25240 25237 4 ATEFSPFELTK Unmodified 1268.6289 0.62886871 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.676 39.064 2 1.5697E-07 18913 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 169.09 165.82 1570200000 57005000 54129000 59014000 12563000 15622000 14454000 105500000 96938000 94287000 61456000 62008000 51464000 95056000 91404000 90632000 16625000 10900000 11068000 156810000 148410000 145540000 41998000 38383000 38984000 2129 1426 2059 41308;41309;41310;41311;41312;41313;41314;41315;41316;41317;41318;41319;41320;41321;41322;41323;41324;41325;41326;41327;41328;41329;41330;41331 25241;25242;25243;25244;25245;25246;25247;25248;25249;25250;25251;25252;25253;25254;25255;25256;25257;25258;25259;25260;25261;25262 25258 22 ATEQCVAETGDVYDALADK Unmodified 2054.9103 0.91026488 1534 P39384 yjiM Uncharacterized protein YjiM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 36.446 34.817 2 1.2086E-17 17091 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 214.18 196.04 93535000 0 0 0 0 0 0 18910000 21645000 17852000 0 0 0 5745600 9240100 7426300 0 0 0 4472300 3932200 4311200 0 0 0 2130 1534 2060 41332;41333;41334;41335;41336;41337;41338;41339;41340 25263;25264;25265;25266;25267;25268 25263 6 ATEQLSSMEMMAVDPLRR Unmodified 2063.9802 0.9802159 1696 P64606 mlaE Probable phospholipid ABC transporter permease protein MlaE yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 41.971 40.382 3 9.3005E-05 16207 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 70.281 61.184 17948000 0 0 0 0 0 0 0 0 0 4204500 3780400 3550800 0 0 0 0 1642100 1940300 0 0 0 2829700 0 0 2131 1696 2061 41341;41342;41343;41344;41345;41346 25269;25270 25270 2 ATESAAWQEAR Unmodified 1218.5629 0.56291441 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.043 16.788 2 3.7689E-10 5778 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 183.47 181.41 814710000 86625000 85756000 82142000 1651700 1640400 2197900 67146000 73863000 65769000 3188600 0 2982100 51050000 45677000 49762000 0 0 0 63372000 60924000 70958000 0 0 0 2132 1144 2062 41347;41348;41349;41350;41351;41352;41353;41354;41355;41356;41357;41358;41359;41360;41361;41362;41363 25271;25272;25273;25274;25275;25276;25277;25278;25279;25280;25281;25282 25278 8 ATEVNYHDSGATIR Unmodified 1532.7219 0.72193424 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 2 2 2 2 2 2 2 2 2 13.56 14.424 2;3 1.2413E-19 4264 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 212.93 207.15 817360000 78247000 78961000 53607000 0 0 0 77224000 81676000 73613000 0 0 0 57209000 61442000 57321000 0 0 0 65710000 56466000 75885000 0 0 0 2133 1192 2063 41364;41365;41366;41367;41368;41369;41370;41371;41372;41373;41374;41375;41376;41377;41378;41379;41380;41381;41382;41383;41384;41385;41386;41387;41388 25283;25284;25285;25286;25287;25288;25289;25290;25291;25292;25293;25294;25295;25296;25297 25294 15 ATFDLAK Unmodified 764.40685 0.40685468 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.294 20.683 2 0.0017156 7988 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.08 68.575 3297900000 875990000 894580000 728470000 1143900 1070000 1325900 80854000 89759000 86561000 0 0 0 72212000 62758000 63049000 0 0 0 114780000 114380000 110930000 0 0 0 2134 852 2064 41389;41390;41391;41392;41393;41394;41395;41396;41397;41398;41399;41400;41401;41402;41403 25298;25299;25300;25301;25302;25303;25304;25305;25306 25302 9 ATFGNMGMNDEETVALIAGGHTLGK Unmodified 2533.1941 0.19410807 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 46.217 44.755 3 1.3114E-07 21980 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.899 70.137 305260000 42591000 35244000 32118000 0 0 0 0 48126000 40670000 0 0 0 18810000 0 17372000 0 0 0 23957000 25941000 20430000 0 0 0 2135 1086 2065 41404;41405;41406;41407;41408;41409;41410;41411;41412;41413 25307;25308;25309;25310;25311 25308 5 ATFIGHSMGGK Unmodified 1104.5386 0.53861391 1766 P75736 ybfF Esterase YbfF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.091 14.932 2 0.00025065 4895 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.009 87.744 108750000 14174000 13916000 14341000 0 0 0 6776500 8980900 6519000 0 0 0 6285500 5876400 6398400 0 0 0 9506100 6461400 9514900 0 0 0 2136 1766 2066 41414;41415;41416;41417;41418;41419;41420;41421;41422;41423;41424;41425 25312;25313;25314 25313 3 ATFNSEEK Unmodified 924.41888 0.41887593 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.22 11.824 2 0.0021992 3023 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 111.82 108.2 1234700000 96781000 97650000 0 6107400 6728200 7457600 82251000 67198000 76727000 15095000 12400000 12585000 108890000 101730000 97577000 0 2408600 5082300 206210000 0 202880000 8981600 11056000 8942900 2137 937 2067 41426;41427;41428;41429;41430;41431;41432;41433;41434;41435;41436;41437;41438;41439;41440;41441;41442;41443;41444;41445;41446 25315;25316;25317;25318;25319;25320;25321;25322;25323;25324 25317 5 ATFPNELSLSELK Unmodified 1447.7559 0.75586013 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 42.717 41.164 2 1.2885E-05 19912 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.89 104.06 1182600000 125860000 115080000 0 0 0 0 0 130960000 0 0 0 0 115190000 114680000 113400000 0 0 0 157560000 155490000 154410000 0 0 0 2138 1360 2068 41447;41448;41449;41450;41451;41452;41453;41454;41455 25325;25326;25327;25328 25325 4 ATFSLGK Acetyl (Protein N-term) 764.40685 0.40685468 610 P0AAS7 ybcJ Uncharacterized protein YbcJ yes yes 1 0 0 By MS/MS By MS/MS 1 1 22.649 21.827 2 0.08415 7225 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 49.59 13.404 10414000 0 0 0 0 0 0 0 0 0 0 0 4108200 0 0 0 0 0 0 0 0 0 6305500 0 0 2139 610 2069 41456;41457 25329;25330 25330 2 ATFSLGK Unmodified 722.39629 0.39629 610 P0AAS7 ybcJ Uncharacterized protein YbcJ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 19.134 19.691 2 0.025379 7397 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.715 59.454 43697000 12503000 8460500 8747100 0 0 0 2941800 3325000 0 0 0 0 1478100 1119100 0 0 0 0 0 2344600 2778000 0 0 0 2140 610 2069 41458;41459;41460;41461;41462;41463;41464;41465;41466 25331;25332 25332 2 ATFVVDPQGIIQAIEVTAEGIGR Unmodified 2383.2747 0.27472488 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 2 2 2 2 2 2 55.85 54.383 2;3 2.6208E-89 27108 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 333.07 325.66 3039100000 147300000 129620000 132960000 0 5257100 3792200 236010000 173000000 223230000 0 0 2243300 304270000 300050000 267280000 0 0 0 370300000 373430000 370310000 0 0 0 2141 827 2070 41467;41468;41469;41470;41471;41472;41473;41474;41475;41476;41477;41478;41479;41480;41481;41482;41483;41484;41485;41486;41487;41488;41489;41490 25333;25334;25335;25336;25337;25338;25339;25340;25341;25342;25343;25344;25345;25346;25347;25348;25349;25350;25351;25352;25353 25333 21 ATGAAEDLLIVRP Unmodified 1324.7351 0.73506511 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.447 38.605 2 8.6099E-05 15493 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 89.171 86.888 52893000 2985100 2481900 2620500 529760 772130 506090 5470600 0 4624700 2358600 3517700 3763000 1992400 2529200 1973500 0 0 0 5026100 4965200 4796900 1006400 973360 0 2142 1877 2071 41491;41492;41493;41494;41495;41496;41497;41498;41499;41500;41501;41502;41503;41504;41505;41506;41507;41508;41509 25354 25354 1 ATGASVVLFDHALSPAQER Unmodified 1968.0065 0.0064889465 1255 P25519 hflX GTPase HflX yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 35.675 34.109 3 3.3002E-07 16440 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.56 87.509 119410000 31598000 30524000 23127000 0 386480 0 6324500 4142800 4772900 0 0 0 3884900 4420300 4677500 0 0 0 0 5547000 0 0 0 0 2143 1255 2072 41510;41511;41512;41513;41514;41515;41516;41517;41518;41519;41520 25355;25356 25355 2 ATGAVITDWRPEDPAFWQQR Unmodified 2343.1396 0.13962838 1061 P10903 narK Nitrate/nitrite transporter NarK yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.315 43.891 3 1.0865E-10 20650 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 129.46 121.66 608970000 24028000 0 16839000 8932800 5248800 7057400 45450000 48819000 46265000 23111000 22306000 20653000 50489000 54514000 46073000 9617800 4490400 4766100 48372000 44164000 49142000 10431000 10385000 7815900 2144 1061 2073 41521;41522;41523;41524;41525;41526;41527;41528;41529;41530;41531;41532;41533;41534;41535;41536;41537;41538;41539;41540;41541;41542;41543 25357;25358;25359;25360;25361;25362;25363;25364;25365;25366;25367 25365 11 ATGDIATVHHLPPTLMAQWYFGDASSK Unmodified 2913.412 0.41196342 482 P0A915 ompW Outer membrane protein W yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 46.426 44.109 3 1.7656E-05 18061 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 74.905 72.177 17956000 0 0 0 0 0 0 0 0 0 5471500 5321500 7162600 0 0 0 0 0 0 0 0 0 0 0 0 2145 482 2074 41544;41545;41546 25368;25369 25368 2 ATGDVEFR Unmodified 893.4243 0.42429566 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.754 16.405 2 0.0038108 4611 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 89.296 52.739 136480000 0 9314300 8736700 2346100 1993100 1769100 0 0 0 5049600 4434700 6343700 11964000 10793000 15389000 0 0 0 17123000 15713000 16542000 0 4962200 4005900 2146 1631 2075 41547;41548;41549;41550;41551;41552;41553;41554;41555;41556;41557;41558;41559;41560;41561;41562 25370;25371;25372;25373;25374;25375;25376 25372 7 ATGFPIAK Unmodified 803.45414 0.45413923 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 19.826 20.4 2 0.14137 7584 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 46.994 36.856 1340500000 329110000 293370000 270400000 0 0 0 0 0 0 0 0 0 55125000 0 45731000 0 0 0 173760000 173060000 0 0 0 0 2147 65 2076 41563;41564;41565;41566;41567;41568;41569 25377 25377 0 ATGIDFDVR Unmodified 992.49271 0.49270958 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.652 28.156 2 4.5977E-05 12435 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.05 106.81 1217700000 30871000 46944000 42968000 10310000 9980300 9655700 109900000 100030000 95642000 29170000 28050000 23783000 84205000 80647000 78180000 0 0 0 129670000 131430000 121960000 17123000 18595000 18550000 2148 1426 2077 41570;41571;41572;41573;41574;41575;41576;41577;41578;41579;41580;41581;41582;41583;41584;41585;41586;41587;41588;41589;41590;41591 25378;25379;25380;25381;25382;25383;25384;25385;25386;25387;25388;25389;25390;25391;25392;25393;25394;25395;25396 25396 19 ATGIDFDVRK Unmodified 1120.5877 0.58767259 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 20.58 20.588 2;3 0.00076851 6357 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 88.37 64.34 144730000 0 0 0 10353000 10768000 11498000 0 0 0 16606000 18306000 22854000 0 0 0 0 0 0 0 0 0 18213000 18590000 17544000 2149 1426 2078 41592;41593;41594;41595;41596;41597;41598;41599;41600;41601;41602;41603;41604;41605;41606;41607 25397;25398;25399;25400;25401;25402;25403;25404;25405;25406;25407;25408;25409;25410;25411 25404 15 ATGLDALFDATIK Unmodified 1334.7082 0.70818166 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 51.838 50.559 2;3 1.3089E-12 23786 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 195.51 191.81 5143400000 384050000 401840000 375320000 2978100 2799300 0 749540000 645670000 617190000 1785800 0 2554900 343470000 328730000 343720000 0 0 0 317390000 316250000 307940000 0 1095700 1058900 2150 256 2079 41608;41609;41610;41611;41612;41613;41614;41615;41616;41617;41618;41619;41620;41621;41622;41623;41624;41625;41626;41627;41628;41629;41630;41631;41632;41633;41634;41635;41636;41637 25412;25413;25414;25415;25416;25417;25418;25419;25420;25421;25422;25423;25424;25425;25426;25427;25428;25429;25430;25431;25432;25433;25434;25435;25436;25437 25432 26 ATGMNVNAMLSGPMGGDQQVGALISEGK Unmodified 2732.2932 0.29317019 305 P0A731 mgsA Methylglyoxal synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1 1 1 2 2 2 2 2 2 1 51.026 49.794 2;3 8.7813E-31 24107 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 241.8 239.78 526730000 67195000 51757000 32650000 0 0 1217000 28929000 26369000 30879000 0 0 2127400 45215000 44312000 49114000 0 0 0 49621000 47712000 47203000 0 0 2427100 2151 305 2080 41638;41639;41640;41641;41642;41643;41644;41645;41646;41647;41648;41649;41650;41651;41652;41653;41654;41655;41656;41657;41658;41659;41660 25438;25439;25440;25441;25442;25443;25444;25445;25446;25447;25448;25449;25450;25451;25452;25453 25444 16 ATGTPAIQVNTGK Unmodified 1256.6725 0.67246486 603 P0AAN3 hypB Hydrogenase isoenzymes nickel incorporation protein HypB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.671 18.127 2 6.6227E-07 6295 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 171.85 163.16 430960000 10448000 10734000 10272000 0 0 0 65519000 63327000 55161000 2222800 2042600 1793300 36392000 36903000 38321000 766530 0 619370 30319000 32398000 33720000 0 0 0 2152 603 2081 41661;41662;41663;41664;41665;41666;41667;41668;41669;41670;41671;41672;41673;41674;41675;41676;41677 25454;25455;25456;25457;25458;25459;25460;25461;25462;25463;25464;25465 25464 11 ATGTSEMAPALVAAFGGK Unmodified 1677.8396 0.83960654 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 46.512 45.007 2;3 2.7736E-09 22299 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.5 143.28 1734500000 58375000 63696000 51155000 16011000 16329000 16927000 159710000 146670000 156370000 61343000 65253000 53790000 137120000 117160000 123990000 9321400 7442700 7267200 135440000 133030000 134780000 17778000 24528000 20958000 2153 1742 2082 41678;41679;41680;41681;41682;41683;41684;41685;41686;41687;41688;41689;41690;41691;41692;41693;41694;41695;41696;41697;41698;41699;41700;41701;41702;41703;41704;41705;41706;41707;41708;41709;41710;41711;41712;41713;41714;41715;41716;41717;41718;41719;41720;41721;41722;41723 25466;25467;25468;25469;25470;25471;25472;25473;25474;25475;25476;25477;25478;25479;25480;25481;25482;25483;25484;25485;25486;25487;25488;25489;25490;25491;25492;25493;25494;25495;25496;25497;25498;25499;25500;25501;25502;25503 25478 38 ATGWSAFYVDGK Unmodified 1300.6088 0.60880197 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.912 36.289 2 0.0011838 17393 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 74.944 70.646 379230000 0 21348000 22403000 604780 521440 1054100 25856000 29078000 31158000 2923000 2615100 2744400 32275000 25317000 31049000 9121800 4838800 5881400 36942000 42465000 37454000 4888000 4135700 4558200 2154 124 2083 41724;41725;41726;41727;41728;41729;41730;41731;41732;41733;41734;41735;41736;41737;41738;41739;41740;41741;41742;41743;41744;41745;41746 25504;25505;25506;25507;25508;25509;25510;25511;25512;25513;25514 25509 9 ATHADSAVNVTK Unmodified 1212.6099 0.6098646 1688 P64574 yghW Uncharacterized protein YghW yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 2 2 2 2 2 2 1 1 1 2 2 2 1 2 10.985 11.518 2;3 9.0054E-06 2857 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 162 149.72 320690000 0 0 0 0 0 0 26978000 23903000 25121000 14440000 21471000 21330000 18810000 18226000 18583000 8445900 3737200 4507500 21444000 35253000 23101000 17041000 5114000 13188000 2155 1688 2084 41747;41748;41749;41750;41751;41752;41753;41754;41755;41756;41757;41758;41759;41760;41761;41762;41763;41764;41765;41766;41767;41768;41769;41770;41771;41772;41773;41774;41775;41776;41777 25515;25516;25517;25518;25519;25520 25520 6 ATHHIAEIIELTEQLIAK Unmodified 2029.1208 0.12079042 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 3 3 3 3 3 3 51.665 50.416 2;3;4 9.4788E-56 23737 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 289.65 288.66 1631700000 127040000 131050000 124630000 928320 0 0 104500000 113680000 112160000 0 0 0 164220000 126150000 125600000 0 0 0 176130000 162960000 162620000 0 0 0 2156 1188 2085 41778;41779;41780;41781;41782;41783;41784;41785;41786;41787;41788;41789;41790;41791;41792;41793;41794;41795;41796;41797;41798;41799;41800;41801;41802;41803;41804;41805;41806;41807;41808;41809;41810;41811;41812;41813;41814 25521;25522;25523;25524;25525;25526;25527;25528;25529;25530;25531;25532;25533;25534;25535;25536;25537;25538;25539;25540;25541;25542;25543;25544;25545;25546;25547;25548;25549;25550;25551;25552 25547 28 ATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK Unmodified 4496.2612 0.26120667 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 54.288 53.014 6 3.3561E-08 21349 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 85.468 84.406 82985000 0 0 0 0 0 0 12636000 0 10646000 0 16967000 0 0 11292000 0 0 12933000 0 0 0 0 5575400 4276800 8658400 2157 1739 2086 41815;41816;41817;41818;41819;41820;41821;41822 25553 25553 1 ATIANMSPEYGATCGFFPIDAVTLDYMR Unmodified 3110.4188 0.41876464 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 1 55.359 53.883 2;3 4.7813E-31 26857 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 240.61 224.31 358750000 118640000 104770000 112470000 0 0 0 0 13933000 0 0 0 0 0 0 0 0 0 0 8931000 0 0 0 0 0 2158 1254 2087 41823;41824;41825;41826;41827;41828;41829;41830;41831 25554;25555;25556 25554 3 ATIAPANSEYAK Unmodified 1234.6194 0.61936665 1277 P25894 loiP Metalloprotease LoiP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.145 15.892 2 2.7043E-06 5386 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 140.16 135.71 132870000 15694000 13632000 11369000 1499500 1469300 1585000 8254900 7197100 8425800 2245100 0 0 6582400 6009100 7403100 0 0 0 13494000 14545000 12810000 652830 0 0 2159 1277 2088 41832;41833;41834;41835;41836;41837;41838;41839;41840;41841;41842;41843;41844;41845;41846;41847;41848 25557;25558;25559;25560;25561;25562 25557 6 ATIDAYIPPQSLEEMWDIPGLQER Unmodified 2771.3476 0.34763183 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.249 53.803 3 0.017682 21906 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 49.555 37.122 135040000 0 0 0 1764600 0 2695700 0 0 13806000 11375000 12015000 12463000 6129900 7977900 6724200 0 0 0 10705000 10007000 10279000 9390300 6817100 12891000 2160 1057 2089 41849;41850;41851;41852;41853;41854;41855;41856;41857;41858;41859;41860;41861;41862;41863 25563 25563 0 ATIDGLENMNSPEMVAAK Unmodified 1889.8863 0.88629874 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 1 1 1 2 2 1 2 2 2 2 1 2 1 2 2 1 1 1 37.218 35.714 2;3 1.4994E-22 13902 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 241.51 236.02 5630100000 977570000 826360000 741150000 18895000 20192000 17491000 169920000 152120000 166490000 52358000 52938000 53777000 324940000 306300000 270720000 53820000 22282000 29337000 412750000 435200000 447610000 25798000 25663000 26463000 2161 376 2090 41864;41865;41866;41867;41868;41869;41870;41871;41872;41873;41874;41875;41876;41877;41878;41879;41880;41881;41882;41883;41884;41885;41886;41887;41888;41889;41890;41891;41892;41893;41894;41895;41896;41897;41898;41899;41900;41901;41902;41903 25564;25565;25566;25567;25568;25569;25570;25571;25572;25573;25574;25575;25576;25577;25578;25579;25580;25581;25582;25583;25584;25585;25586;25587;25588;25589;25590;25591;25592;25593;25594 25573 31 ATIDGLENMNSPEMVAAK Oxidation (M) 1905.8812 0.88121336 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 31.297 30.13 2 0.00012186 14211 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.469 74.626 27172000 7632000 6386700 8888300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4265300 0 0 0 2162 376 2090 41904;41905;41906;41907 25595 25595 160 1 ATIDGLENMNSPEMVAAKR Unmodified 2045.9874 0.98740976 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 31.284 29.94 3 7.0859E-10 10416 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 117.26 113.62 69923000 0 0 0 3937500 4530700 4978400 0 0 0 8086100 4097400 7136500 0 0 0 10022000 12118000 9937100 0 0 0 0 0 5079600 2163 376 2091 41908;41909;41910;41911;41912;41913;41914;41915;41916;41917 25596;25597;25598;25599 25596 4 ATIHVDGK Unmodified 839.45012 0.45011648 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.008 11.776 2 0.0022577 2947 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 102 46.398 560940000 0 25657000 36174000 4327200 4881000 3758800 45953000 58044000 54072000 0 5335900 7006200 47791000 44432000 43780000 0 0 0 61004000 54070000 57721000 0 0 6935500 2164 1427 2092 41918;41919;41920;41921;41922;41923;41924;41925;41926;41927;41928;41929;41930;41931;41932;41933;41934 25600;25601;25602;25603;25604;25605;25606;25607;25608;25609 25604 10 ATIPLLVETGPK Unmodified 1237.7282 0.72818882 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.597 37.753 2 1.3049E-05 18836 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.76 127.76 423960000 36613000 41714000 34946000 1272700 908670 0 37807000 35387000 37122000 1095600 810300 0 31719000 30872000 28397000 0 0 0 33730000 33762000 35300000 969650 745040 792400 2165 1246 2093 41935;41936;41937;41938;41939;41940;41941;41942;41943;41944;41945;41946;41947;41948;41949;41950;41951;41952;41953 25610;25611;25612;25613;25614;25615;25616;25617;25618;25619;25620;25621 25610 12 ATIPWDR Unmodified 857.43955 0.43955179 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 2 2 2 2 2 2 2 25.337 24.326 2 0.0026472 10991 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.28 107.43 827040000 109190000 44516000 44788000 0 0 0 36796000 53094000 100440000 0 0 0 59538000 52226000 54649000 0 0 0 90442000 94131000 87227000 0 0 0 2166 97 2094 41954;41955;41956;41957;41958;41959;41960;41961;41962;41963;41964;41965;41966;41967;41968;41969;41970;41971;41972;41973 25622;25623;25624;25625;25626;25627;25628;25629 25625 8 ATIPWDRDR Unmodified 1128.5676 0.56760585 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.048 19.646 3 0.0018315 7477 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 80.231 74.389 62827000 3901000 4670400 3914700 0 0 0 0 7385500 7212700 0 0 0 3328400 3849100 3045800 0 0 0 10534000 8042600 6942600 0 0 0 2167 97 2095 41974;41975;41976;41977;41978;41979;41980;41981;41982;41983;41984 25630;25631;25632 25630 3 ATIVNAGSSDFLEGEQVEYSR Unmodified 2271.0655 0.065519968 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 6 5 7 3 2 2 10 10 12 2 2 2 5 5 7 41.22 39.927 2;3 3.6059E-153 19124 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 416.68 405.07 13727000000 63493000 111600000 100370000 7252300 8422200 7224400 54885000 90561000 88186000 897190000 892720000 807760000 98946000 117950000 89089000 2600500000 2054200000 1937000000 140970000 143110000 141260000 913090000 930090000 1430700000 2168 458 2096 41985;41986;41987;41988;41989;41990;41991;41992;41993;41994;41995;41996;41997;41998;41999;42000;42001;42002;42003;42004;42005;42006;42007;42008;42009;42010;42011;42012;42013;42014;42015;42016;42017;42018;42019;42020;42021;42022;42023;42024;42025;42026;42027;42028;42029;42030;42031;42032;42033;42034;42035;42036;42037;42038;42039;42040;42041;42042;42043;42044;42045;42046;42047;42048;42049;42050;42051;42052;42053;42054;42055;42056;42057;42058;42059;42060;42061;42062;42063;42064;42065;42066;42067;42068;42069;42070;42071;42072;42073;42074;42075;42076;42077;42078;42079;42080;42081 25633;25634;25635;25636;25637;25638;25639;25640;25641;25642;25643;25644;25645;25646;25647;25648;25649;25650;25651;25652;25653;25654;25655;25656;25657;25658;25659;25660;25661;25662;25663;25664;25665;25666;25667;25668;25669;25670;25671;25672;25673;25674;25675;25676;25677;25678;25679;25680;25681;25682;25683;25684;25685;25686;25687;25688;25689;25690;25691;25692;25693;25694;25695;25696;25697;25698;25699;25700;25701;25702;25703;25704;25705;25706;25707;25708;25709;25710;25711;25712;25713;25714;25715;25716;25717;25718;25719;25720;25721;25722;25723;25724;25725;25726 25685 90 ATKEPIKNEANNGLK Unmodified 1625.8737 0.87368386 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.811 11.627 2 7.9565E-11 2706 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 165.58 151.77 143500000 16585000 11281000 13173000 0 0 0 13154000 8518800 9861900 0 0 0 9248900 10554000 9890600 0 0 0 13748000 16225000 11264000 0 0 0 2169 1222 2097 42082;42083;42084;42085;42086;42087;42088;42089;42090;42091;42092;42093 25727;25728;25729;25730;25731 25730 5 ATLCILDPR Unmodified 1057.559 0.559015 1407 P33030 yeiR Uncharacterized protein YeiR yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 33.472 31.883 2 0.024695 15069 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 61.582 35.477 156230000 12214000 12699000 0 0 0 0 15246000 14934000 0 0 1378200 1977100 10454000 10442000 9842900 0 0 0 19297000 22881000 23709000 0 1150700 0 2170 1407 2098 42094;42095;42096;42097;42098;42099;42100;42101;42102;42103;42104;42105;42106 25732;25733;25734;25735;25736;25737 25733 6 ATLDTLALYLACGIDPEK Unmodified 1962.9972 0.99722939 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 55.202 53.735 3 1.9981E-22 25670 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 140.46 135.66 605590000 55493000 5668300 59698000 0 0 0 52858000 0 41865000 0 0 0 89937000 0 70070000 0 0 0 79769000 73360000 76872000 0 0 0 2171 57 2099 42107;42108;42109;42110;42111;42112;42113;42114;42115;42116 25738;25739;25740;25741;25742;25743;25744 25743 7 ATLEAEIAR Unmodified 972.52401 0.52400971 792 P0ADK8 yibL Uncharacterized protein YibL yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.47 21.721 2 0.0035419 8984 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 81.215 61.578 67547000 10932000 12543000 10542000 1005000 831510 738490 6175800 6795000 7425500 0 0 0 0 0 0 0 0 0 3656700 4602400 2299800 0 0 0 2172 792 2100 42117;42118;42119;42120;42121;42122;42123;42124;42125;42126;42127;42128 25745;25746;25747 25745 3 ATLEDLGQAK Unmodified 1044.5451 0.54513908 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.99 21.108 2 0.00014418 8394 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 126.41 61.374 20503000000 1992100000 1674000000 1575500000 29096000 33493000 38731000 1909700000 1859800000 1674800000 45809000 39285000 34229000 1352800000 1260700000 1247900000 12333000 9327900 11352000 1997100000 1824400000 1790100000 33314000 30461000 26566000 2173 240 2101 42129;42130;42131;42132;42133;42134;42135;42136;42137;42138;42139;42140;42141;42142;42143;42144;42145;42146;42147;42148;42149;42150;42151;42152 25748;25749;25750;25751;25752;25753;25754;25755;25756;25757;25758;25759;25760;25761;25762;25763;25764;25765 25761 18 ATLEDLGQAKR Unmodified 1200.6463 0.64625011 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 2 2 2 15.759 16.243 2;3 0.0001379 4145 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 91.855 80.949 217350000 3788600 4690200 4245100 22867000 25452000 22949000 5555000 5499900 5569300 11708000 10606000 11492000 4155700 3077300 3751300 7611000 4230500 4428100 5918700 5690300 5690100 13849000 10424000 14103000 2174 240 2102 42153;42154;42155;42156;42157;42158;42159;42160;42161;42162;42163;42164;42165;42166;42167;42168;42169;42170;42171;42172;42173;42174;42175;42176;42177;42178;42179;42180;42181;42182;42183;42184;42185;42186 25766;25767;25768;25769;25770;25771 25768 6 ATLESIAYQTR Unmodified 1251.6459 0.64591575 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.324 26.135 2 1.4791E-14 11832 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 218.55 201.77 8583900000 234440000 206490000 182570000 4169600 4696400 3126900 1113500000 1053400000 1006900000 7700900 7157300 7821900 805490000 748200000 720800000 6617700 3985200 4389400 896870000 771090000 772210000 6580900 8039400 7586600 2175 239 2103 42187;42188;42189;42190;42191;42192;42193;42194;42195;42196;42197;42198;42199;42200;42201;42202;42203;42204;42205;42206;42207;42208;42209;42210 25772;25773;25774;25775;25776;25777;25778;25779;25780;25781;25782;25783;25784;25785;25786;25787;25788;25789 25780 18 ATLFVAER Unmodified 905.49707 0.49706667 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 24.705 23.69 2 0.027087 10047 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 75.738 60.299 47992000 0 0 3981700 0 0 0 0 0 0 1202700 0 0 8053700 5922400 5550000 0 0 0 10370000 12912000 0 0 0 0 2176 1070 2104 42211;42212;42213;42214;42215;42216;42217 25790 25790 0 ATLGEVGNAEHMLR Unmodified 1496.7406 0.7405612 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 26.34 25.211 2;3 1.7275E-45 11534 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 289.59 284.28 8303100000 286440000 1604100000 1824500000 55067000 55559000 65313000 80809000 87990000 499820000 116070000 105950000 96077000 164350000 806490000 128820000 118470000 109830000 115170000 243520000 209730000 1071300000 146280000 151080000 160310000 2177 1620 2105 42218;42219;42220;42221;42222;42223;42224;42225;42226;42227;42228;42229;42230;42231;42232;42233;42234;42235;42236;42237;42238;42239;42240;42241;42242;42243;42244;42245;42246;42247;42248;42249;42250;42251;42252;42253;42254;42255;42256;42257;42258;42259;42260;42261;42262;42263;42264;42265 25791;25792;25793;25794;25795;25796;25797;25798;25799;25800;25801;25802;25803;25804;25805;25806;25807;25808;25809;25810;25811;25812;25813;25814;25815;25816;25817;25818;25819;25820;25821;25822;25823;25824;25825;25826;25827;25828;25829;25830;25831;25832;25833;25834;25835;25836;25837 25806 47 ATLKPEGQAALDQLYSQLSNLDPK Unmodified 2599.3493 0.34934639 480 P0A910 ompA Outer membrane protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 4 1 3 3 3 3 4 4 3 3 3 3 2 2 3 3 3 3 3 3 51.339 50.156 2;3;4 5.9113E-42 24384 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 287.75 274.95 11528000000 570480000 549050000 539210000 169090000 210530000 3942300 373270000 404130000 404360000 277870000 326200000 321090000 856200000 612380000 820240000 188890000 167480000 180820000 1337800000 1291300000 1206600000 283620000 218000000 215430000 2178 480 2106 42266;42267;42268;42269;42270;42271;42272;42273;42274;42275;42276;42277;42278;42279;42280;42281;42282;42283;42284;42285;42286;42287;42288;42289;42290;42291;42292;42293;42294;42295;42296;42297;42298;42299;42300;42301;42302;42303;42304;42305;42306;42307;42308;42309;42310;42311;42312;42313;42314;42315;42316;42317;42318;42319;42320;42321;42322;42323;42324;42325;42326;42327;42328;42329;42330;42331;42332;42333;42334;42335 25838;25839;25840;25841;25842;25843;25844;25845;25846;25847;25848;25849;25850;25851;25852;25853;25854;25855;25856;25857;25858;25859;25860;25861;25862;25863;25864;25865;25866;25867;25868;25869;25870;25871;25872;25873;25874;25875;25876;25877;25878;25879;25880;25881;25882;25883;25884;25885;25886;25887;25888;25889;25890;25891;25892;25893;25894;25895;25896 25871 59 ATLLAGIR Unmodified 813.50724 0.50723743 1273 P25746 hflD High frequency lysogenization protein HflD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.754 26.507 2 0.0030004 9530 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 95.793 75.445 62247000 0 0 0 2234400 2170200 1375200 0 4878700 4805700 2810800 3214600 2186400 0 0 3469600 1037500 876730 709460 8694000 7210700 7845500 2812900 2691600 3223200 2179 1273 2107 42336;42337;42338;42339;42340;42341;42342;42343;42344;42345;42346;42347;42348;42349;42350;42351;42352;42353 25897;25898;25899;25900;25901;25902;25903 25899 6 ATLLGLGLR Unmodified 912.57565 0.57565135 986 P0AG51 rpmD 50S ribosomal protein L30 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.673 38.057 2 8.1058E-06 18469 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.37 140.8 6539200000 824930000 846590000 667450000 12136000 12173000 9434700 377780000 270050000 261140000 8098400 5971200 8081100 360500000 357400000 418550000 9305300 6980100 7884900 715600000 686630000 654950000 6074200 5947500 5504300 2180 986 2108 42354;42355;42356;42357;42358;42359;42360;42361;42362;42363;42364;42365;42366;42367;42368;42369;42370;42371;42372;42373;42374;42375;42376;42377 25904;25905;25906;25907;25908;25909;25910;25911;25912;25913;25914;25915;25916;25917;25918;25919;25920;25921;25922;25923;25924;25925;25926;25927 25922 24 ATLLGLGLRR Unmodified 1068.6768 0.67676237 986 P0AG51 rpmD 50S ribosomal protein L30 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 28.844 27.392 3 0.016829 9273 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 54.982 34.678 5943800 0 0 0 1722000 2084900 2136900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2181 986 2109 42378;42379;42380 25928;25929;25930 25928 3 ATLLIETLPAVFQMDEILHALR Unmodified 2493.3665 0.36651678 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 1 1 2 2 3 2 3 3 55.806 54.359 2;3;4 2.223E-28 27116 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 193.72 191.03 7994200000 1995400000 2360400000 2330800000 0 0 0 50621000 37689000 93280000 0 0 0 189350000 14081000 163730000 0 0 0 221550000 264010000 273190000 0 0 0 2182 195 2110 42381;42382;42383;42384;42385;42386;42387;42388;42389;42390;42391;42392;42393;42394;42395;42396;42397;42398;42399;42400;42401;42402;42403;42404;42405;42406;42407 25931;25932;25933;25934;25935;25936;25937;25938;25939;25940;25941;25942;25943;25944 25935 10 ATLLLLGMGLDEFSMSAISIPR Unmodified 2334.2327 0.23272541 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 55.852 54.413 3 8.9074E-07 26854 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.846 94.753 115590000 0 0 0 4195000 0 0 9623900 0 0 0 0 0 17045000 16895000 20410000 0 0 0 16759000 15924000 14740000 0 0 0 2183 192 2111 42408;42409;42410;42411;42412;42413;42414;42415 25945;25946;25947;25948;25949;25950;25951 25947 7 ATLPAIGR Unmodified 797.47594 0.4759373 1243 P24205 lpxM Lipid A biosynthesis myristoyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.796 21.575 2 0.016473 7317 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 68.485 51.214 39349000 2714700 0 0 0 0 0 5014600 2309300 0 3458100 3686400 3631700 2554000 1806200 0 873280 0 551110 0 3311600 3679200 2170900 1956900 1631000 2184 1243 2112 42416;42417;42418;42419;42420;42421;42422;42423;42424;42425;42426;42427;42428;42429;42430 25952;25953;25954;25955;25956 25954 4 ATMGLDPGLR Unmodified 1029.5277 0.52771487 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.43 26.448 2 0.0025038 12122 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 78.516 70.949 503240000 45813000 40583000 44099000 0 0 0 42665000 39246000 44497000 0 0 0 39850000 34361000 33779000 1071000 0 611010 47660000 48002000 41001000 0 0 0 2185 1586 2113 42431;42432;42433;42434;42435;42436;42437;42438;42439;42440;42441;42442;42443;42444 25957;25958;25959;25960;25961;25962;25963;25964;25965;25966;25967;25968 25960 12 ATNAKPVYK Unmodified 990.54983 0.54983053 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 1 2 2 2 2 2 17.518 17.496 2 0.0001596 2368 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 138.1 117.58 758790000 103920000 109390000 87345000 0 0 0 11970000 8035200 19544000 0 0 0 49497000 49145000 36843000 0 0 0 106430000 82886000 93793000 0 0 0 2186 338 2114 42445;42446;42447;42448;42449;42450;42451;42452;42453;42454;42455;42456;42457;42458;42459;42460;42461;42462;42463;42464;42465 25969;25970;25971;25972;25973;25974;25975;25976;25977;25978;25979;25980;25981 25979 13 ATNELHLMYLHATDK Unmodified 1755.8614 0.86140461 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 25.75 24.726 4 0.0010739 11192 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 64.65 61.197 236570000 26105000 22329000 14288000 0 0 0 0 26246000 30949000 0 0 0 18069000 21454000 21146000 0 0 0 17802000 20229000 17948000 0 0 0 2187 880 2115 42466;42467;42468;42469;42470;42471;42472;42473;42474;42475;42476 25982;25983;25984;25985;25986;25987;25988;25989 25984 8 ATNLLYTR Unmodified 950.51853 0.5185304 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.073 21.282 2 0.00024244 8748 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.4 83.364 2506300000 608030000 600100000 557880000 9120800 9437600 8341500 168710000 174680000 184860000 0 15472000 14111000 17406000 15432000 16150000 0 0 0 37608000 31637000 37316000 0 0 0 2188 677 2116 42477;42478;42479;42480;42481;42482;42483;42484;42485;42486;42487;42488;42489;42490;42491;42492;42493 25990;25991;25992;25993;25994;25995;25996;25997 25991 7 ATNNVICCYDGDR Unmodified 1556.6348 0.6347755 675 P0ABS5 dnaG DNA primase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.435 21.783 2 8.2476E-06 8744 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 122.69 116.16 59455000 5144200 5495400 5362000 0 0 0 5012600 4679100 4662500 0 0 0 4422600 3637200 4510400 0 0 0 4847700 5972000 5709100 0 0 0 2189 675 2117 42494;42495;42496;42497;42498;42499;42500;42501;42502;42503;42504;42505 25998;25999;26000 25998 3 ATNTQAMIATIASGNVHIISHPGNPK Unmodified 2642.3599 0.35986827 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 1 1 2 2 1 2 1 36.353 34.785 3;4 1.0887E-07 16599 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.19 102.61 389490000 36764000 52849000 39346000 2365000 1477500 2181300 28049000 36353000 32208000 0 0 0 25170000 31698000 25999000 0 0 0 26660000 21329000 27038000 0 0 0 2190 1789 2118 42506;42507;42508;42509;42510;42511;42512;42513;42514;42515;42516;42517;42518;42519;42520;42521;42522;42523;42524;42525;42526;42527 26001;26002;26003;26004;26005;26006;26007;26008;26009;26010 26003 10 ATNVGSTEAALNGLHVDGTLHLLLGGDGK Unmodified 2829.4621 0.46208474 1098 P14900 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.153 47.789 4 0.049377 23304 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 36.378 33.746 147220000 13310000 11340000 14715000 0 0 0 14478000 8866000 11800000 0 0 0 11455000 8045300 9862900 0 0 0 14327000 15431000 13586000 0 0 0 2191 1098 2119 42528;42529;42530;42531;42532;42533;42534;42535;42536;42537;42538;42539 26011 26011 1 ATPAVGFAMGLER Unmodified 1318.6704 0.67035637 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 1 1 2 2 2 39.018 37.323 2;3 2.9581E-12 18587 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 185.96 182.7 713280000 68059000 69718000 56044000 0 632410 0 52661000 53878000 52543000 0 0 0 43814000 37029000 35734000 0 0 0 82968000 77941000 82264000 0 0 0 2192 1634 2120 42540;42541;42542;42543;42544;42545;42546;42547;42548;42549;42550;42551;42552;42553;42554;42555;42556;42557;42558;42559;42560;42561;42562 26012;26013;26014;26015;26016;26017;26018;26019;26020;26021;26022;26023;26024 26012 13 ATPAVINNDGLNYVPTNR Unmodified 1927.9752 0.97518882 1535 P39396 yjiY Inner membrane protein YjiY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.854 33.064 2 1.3846E-36 15722 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 237.07 231.47 180500000 0 0 0 0 0 0 10923000 13640000 10571000 6710800 4827800 4320400 8937200 9459600 10514000 0 0 0 29006000 27479000 28979000 4413200 5479300 5244500 2193 1535 2121 42563;42564;42565;42566;42567;42568;42569;42570;42571;42572;42573;42574;42575;42576;42577 26025;26026;26027;26028;26029;26030;26031;26032;26033;26034;26035;26036;26037;26038;26039 26036 15 ATPEGAR Unmodified 700.3504 0.35040244 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 2 2 3 2 3 2 2 4.831 5.7139 1;2 0.0059292 995 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.596 86.62 1460900000 179420 0 0 0 0 0 171100000 158730000 214460000 0 0 0 151340000 140100000 167350000 0 0 0 145010000 161210000 151430000 0 0 0 2194 1189 2122 42578;42579;42580;42581;42582;42583;42584;42585;42586;42587;42588;42589;42590;42591;42592;42593;42594;42595;42596;42597;42598 26040;26041;26042;26043;26044;26045;26046 26045 6 ATPHINAEMGDFADVVLMPGDPLR Unmodified 2565.2356 0.23557896 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 3 3 2 3 2 2 2 2 52.582 51.296 2;3 1.2455E-83 25214 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 367.64 361.34 4060500000 109680000 119490000 110770000 0 0 0 681330000 627230000 597960000 0 0 0 120220000 101300000 111000000 0 0 0 510210000 501720000 469560000 0 0 0 2195 669 2123 42599;42600;42601;42602;42603;42604;42605;42606;42607;42608;42609;42610;42611;42612;42613;42614;42615;42616;42617;42618;42619;42620;42621;42622;42623;42624;42625;42626;42627 26047;26048;26049;26050;26051;26052;26053;26054;26055;26056;26057;26058;26059;26060;26061;26062;26063;26064;26065 26052 18 ATPHINAEMGDFADVVLMPGDPLR Oxidation (M) 2581.2305 0.23049358 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 50.725 49.223 3 0.0034038 24179 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 62.237 58.901 71798000 0 0 0 0 0 0 24729000 15311000 20840000 0 0 0 0 0 0 0 0 0 0 0 10918000 0 0 0 2196 669 2123 42628;42629;42630;42631 26066 26066 368 0 ATPHINAEMGDFADVVLMPGDPLRAK Unmodified 2764.3677 0.36765576 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 1 48.382 47.021 3;4 6.4557E-07 23208 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 95.366 94.658 320440000 15933000 17808000 13063000 0 0 0 47071000 45051000 48391000 0 0 0 48704000 35709000 40199000 0 0 0 0 0 8514600 0 0 0 2197 669 2124 42632;42633;42634;42635;42636;42637;42638;42639;42640;42641;42642;42643;42644;42645;42646;42647 26067;26068;26069;26070;26071;26072 26068 6 ATPLGAVTK Unmodified 856.50182 0.5018177 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.132 16.948 2 0.097416 6034 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 49.536 40.065 382220000 39924000 36069000 31987000 0 0 0 39786000 32646000 41769000 0 0 0 26467000 24079000 21123000 0 0 0 28715000 27982000 31675000 0 0 0 2198 1609 2125 42648;42649;42650;42651;42652;42653;42654;42655;42656;42657;42658;42659 26073 26073 0 ATPLLDLIK Unmodified 982.60628 0.60628277 156 P07102 appA Periplasmic AppA protein;Phosphoanhydride phosphohydrolase;4-phytase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 45.54 44.065 2 0.063762 21934 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 50.04 50.04 60852000 6726500 7057500 5551800 0 0 0 10777000 10812000 11268000 0 0 0 2996400 3013700 2648600 0 0 0 0 0 0 0 0 0 2199 156 2126 42660;42661;42662;42663;42664;42665;42666;42667;42668 26074;26075;26076;26077 26075 4 ATPQWFVSMDQK Unmodified 1436.6758 0.67583567 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 39.709 37.979 2;3 3.4959E-06 18263 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 163.16 161.43 1944300000 212990000 199650000 182510000 696610 0 888050 146440000 135230000 144030000 0 981540 873150 134850000 129150000 120360000 0 0 0 172620000 174740000 188300000 0 0 0 2200 58 2127 42669;42670;42671;42672;42673;42674;42675;42676;42677;42678;42679;42680;42681;42682;42683;42684;42685;42686;42687;42688;42689;42690;42691;42692;42693;42694;42695;42696 26078;26079;26080;26081;26082;26083;26084;26085;26086;26087;26088;26089;26090;26091;26092;26093;26094;26095 26091 18 ATPSSTDQMLR Unmodified 1205.571 0.57103625 971 P0AFX9 rseB Sigma-E factor regulatory protein RseB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.433 17.216 2 4.987E-05 6075 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.42 124.97 219250000 27436000 21021000 20883000 738770 1008700 1173500 13046000 12916000 14101000 0 0 0 16969000 12079000 12500000 0 0 0 20151000 22913000 22318000 0 0 0 2201 971 2128 42697;42698;42699;42700;42701;42702;42703;42704;42705;42706;42707;42708;42709;42710;42711 26096;26097;26098;26099;26100;26101 26098 6 ATPVELDFSQVEK Unmodified 1461.7351 0.73512469 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 1 2 1 5 6 7 2 3 2 2 1 1 3 2 3 4 5 4 38.432 36.587 1;2;3 1.4041E-50 14592 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 314.08 292.33 32545000000 243990000 261750000 233110000 0 0 6458200 0 112980000 111030000 9023100000 8836800000 7946700000 307260000 267910000 251570000 363140000 233800000 234860000 322650000 299130000 292190000 1080000000 1047300000 1069000000 2202 936 2129 42712;42713;42714;42715;42716;42717;42718;42719;42720;42721;42722;42723;42724;42725;42726;42727;42728;42729;42730;42731;42732;42733;42734;42735;42736;42737;42738;42739;42740;42741;42742;42743;42744;42745;42746;42747;42748;42749;42750;42751;42752;42753;42754;42755;42756;42757;42758;42759;42760;42761;42762;42763;42764;42765;42766;42767;42768;42769;42770;42771;42772;42773 26102;26103;26104;26105;26106;26107;26108;26109;26110;26111;26112;26113;26114;26115;26116;26117;26118;26119;26120;26121;26122;26123;26124;26125;26126;26127;26128;26129;26130;26131;26132;26133;26134;26135;26136;26137;26138;26139;26140;26141;26142;26143;26144;26145;26146;26147;26148;26149 26110 48 ATPVELDFSQVEKA Unmodified 1532.7722 0.77223848 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 3 3 3 4 4 4 40.828 39.468 2;3 7.3691E-11 14570 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 168.05 167.61 14890000000 34102000 33053000 31014000 30560000 29322000 29092000 0 0 0 0 0 2355500 2024900 0 1631900 1935300000 1195100000 1164000000 0 0 0 3305900000 3409100000 3687300000 2203 936 2130 42774;42775;42776;42777;42778;42779;42780;42781;42782;42783;42784;42785;42786;42787;42788;42789;42790;42791;42792;42793;42794;42795;42796;42797;42798;42799;42800;42801;42802;42803;42804;42805;42806 26150;26151;26152;26153;26154;26155;26156;26157;26158;26159;26160;26161;26162;26163;26164;26165;26166;26167;26168;26169;26170;26171;26172;26173;26174;26175 26150 26 ATQGSSLLIP Unmodified 985.54441 0.5444108 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.797 41.165 2 0.037014 19902 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 54.776 52.91 163330000 25983000 26568000 24127000 0 0 0 20475000 20060000 18145000 0 0 0 5341100 4308600 5118700 0 0 0 4917200 4296300 3988800 0 0 0 2204 1316 2131 42807;42808;42809;42810;42811;42812;42813;42814;42815;42816;42817;42818 26176;26177;26178;26179;26180;26181 26181 6 ATQMFDHVILAIAASPSK Unmodified 1898.9924 0.99241879 249 P0A6I6 coaD Phosphopantetheine adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 2 2 2 44.927 43.504 2;3 3.9858E-05 21075 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 65.784 63.713 306590000 27442000 28625000 29809000 0 0 0 27117000 17376000 21494000 0 0 0 23175000 21340000 19231000 0 0 0 31129000 29466000 30384000 0 0 0 2205 249 2132 42819;42820;42821;42822;42823;42824;42825;42826;42827;42828;42829;42830;42831;42832;42833;42834;42835;42836;42837;42838 26182;26183;26184;26185;26186;26187;26188;26189;26190 26186 0 ATQPQLGISDPYQLTEEQYQAVLK Unmodified 2719.3705 0.37047576 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 50.461 49.08 2;3 4.1235E-40 24174 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 274.81 258.92 339850000 110820000 103080000 99632000 0 0 0 0 0 4799500 0 0 0 3302900 0 3836900 0 0 0 4433300 5627300 4320800 0 0 0 2206 1816 2133 42839;42840;42841;42842;42843;42844;42845;42846;42847;42848;42849;42850 26191;26192;26193;26194;26195;26196 26191 6 ATQTGWFSK Unmodified 1024.4978 0.49779495 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.06 22.358 2 0.00088897 9819 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.629 97.751 385920000 17089000 12699000 14461000 3716500 4162400 3280000 28931000 31064000 32448000 10645000 7982700 9888700 21198000 24652000 32037000 0 0 0 36070000 31624000 38758000 8260400 6942000 10013000 2207 819 2134 42851;42852;42853;42854;42855;42856;42857;42858;42859;42860;42861;42862;42863;42864;42865;42866;42867;42868;42869;42870;42871 26197;26198;26199;26200;26201;26202;26203 26198 7 ATSGVPGK Unmodified 715.38645 0.38645359 641 P0AB98 atpB ATP synthase subunit a yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 1 3 3 2 3 2 3 1 9.0843 9.8963 1;2 0.070863 2490 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 62.717 50.333 531320000 0 78623000 0 0 0 0 191460000 32892000 31096000 0 9939300 0 12297000 14923000 8178100 0 0 0 50901000 43181000 50697000 0 0 7134300 2208 641 2135 42872;42873;42874;42875;42876;42877;42878;42879;42880;42881;42882;42883;42884;42885;42886;42887;42888;42889;42890;42891;42892;42893;42894;42895 26204;26205;26206;26207;26208;26209 26206 6 ATSLLLFEHVHGESR Unmodified 1694.874 0.87401821 907 P0AF26 narJ Nitrate reductase molybdenum cofactor assembly chaperone NarJ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 2 2 1 1 1 2 2 2 2 2 1 1 1 27.159 25.977 3;4 0.00013191 12189 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 75.383 68.813 216420000 16939000 0 28837000 0 0 0 13211000 11034000 7966500 0 0 0 9693000 16564000 0 0 0 0 36753000 29522000 27893000 7012800 5222800 5775200 2209 907 2136 42896;42897;42898;42899;42900;42901;42902;42903;42904;42905;42906;42907;42908;42909;42910;42911;42912;42913;42914;42915 26210;26211;26212;26213;26214;26215 26211 6 ATSSSSFLQCSSIIR Unmodified 1642.7985 0.79847001 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 34.988 33.549 2;3 3.6932E-21 15429 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 272.15 265.91 1298700000 143550000 126070000 114530000 0 0 0 107290000 95260000 98264000 0 0 0 94700000 90389000 85581000 0 0 0 108280000 121070000 113750000 0 0 0 2210 1136 2137 42916;42917;42918;42919;42920;42921;42922;42923;42924;42925;42926;42927;42928;42929;42930;42931;42932;42933;42934;42935;42936;42937;42938 26216;26217;26218;26219;26220;26221;26222;26223;26224;26225;26226;26227;26228;26229;26230;26231 26228 15 ATSTISVGYDNFDVDALTAR Unmodified 2115.012 0.012027834 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.164 46.8 2;3 2.9253E-30 22710 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 220.4 214.92 662340000 83073000 82384000 71654000 0 0 0 45415000 49331000 46500000 0 0 0 47522000 46827000 43098000 0 0 0 48332000 48368000 49831000 0 0 0 2211 1485 2138 42939;42940;42941;42942;42943;42944;42945;42946;42947;42948;42949;42950;42951;42952;42953;42954;42955;42956;42957;42958;42959;42960;42961;42962 26232;26233;26234;26235;26236;26237;26238;26239;26240;26241;26242;26243;26244;26245;26246;26247;26248;26249;26250 26245 19 ATSTSGDTLFQK Unmodified 1254.6092 0.6091959 1056 P10384 fadL Long-chain fatty acid transport protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.36 19.813 2 0.001142 7518 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.509 58.969 35686000 0 5124300 5095100 2013600 1786500 1880700 0 0 0 1755400 0 0 1695900 1432100 1319700 0 0 0 2990000 3271000 4798400 0 958200 1564900 2212 1056 2139 42963;42964;42965;42966;42967;42968;42969;42970;42971;42972;42973;42974;42975;42976 26251 26251 1 ATSVQTGK Unmodified 790.41848 0.418482 1660 P63235 gadC Probable glutamate/gamma-aminobutyrate antiporter yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 6.7326 7.5337 2 0.0010836 1845 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 111.82 95.662 771870000 43201000 35618000 37606000 35117000 37341000 33318000 152530000 141160000 170800000 23853000 23226000 21616000 4302700 4144400 5622800 0 0 0 0 0 2410300 0 0 0 2213 1660 2140 42977;42978;42979;42980;42981;42982;42983;42984;42985;42986;42987;42988;42989;42990;42991;42992;42993;42994 26252;26253;26254;26255;26256;26257;26258;26259 26254 7 ATTDSGMTTNNPTLQTTPTDDQFTNNGGR Unmodified 3055.3425 0.34249946 1568 P45464 lpoA Penicillin-binding protein activator LpoA yes yes 0 0 0 By matching By MS/MS 1 1 31.113 28.889 3 0.0022061 11010 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 44.555 38.191 3821000 0 0 0 0 0 0 0 0 0 0 1819900 2001100 0 0 0 0 0 0 0 0 0 0 0 0 2214 1568 2141 42995;42996 26260 26260 1 ATTERDVNQLTPR Unmodified 1499.7692 0.76921879 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 13.234 14.321 3 0.010933 3344 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 41.644 36.467 11006000 0 0 0 4321900 2956300 3728100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2215 908 2142 42997;42998;42999 26261 26261 1 ATTHLDVCAVVPAAGFGR Unmodified 1840.9254 0.92540185 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.921 35.07 3 9.2477E-07 13586 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 77.324 74.85 42329000 0 0 0 5259700 4952300 4271000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8923600 10006000 8916400 2216 1964 2143 43000;43001;43002;43003;43004;43005 26262;26263;26264;26265;26266;26267 26262 6 ATTITDFDRK Unmodified 1166.5932 0.5931519 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 2 2 2 1 2 2 2 1 1 1 1 1 2 2 2 16.006 16.459 2;3 0.0016524 4119 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 67.207 62.413 104230000 0 0 3914200 11763000 12266000 12476000 0 2252900 0 8634100 9425500 7320800 2226000 1800700 0 0 2581300 1538600 0 0 2269800 8743300 7900500 9114300 2217 1899 2144 43006;43007;43008;43009;43010;43011;43012;43013;43014;43015;43016;43017;43018;43019;43020;43021;43022;43023;43024;43025;43026;43027;43028;43029;43030 26268;26269;26270;26271;26272;26273 26269 6 ATTITSGGTPVQIDNTAGSATANLGAVSLVK Unmodified 2914.5247 0.52474457 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 45.132 43.8 2;3 4.0436E-68 21237 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 263.92 262.05 404920000 143690000 126690000 121790000 0 910670 11844000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2218 96 2145 43031;43032;43033;43034;43035;43036;43037;43038;43039 26274;26275;26276;26277 26277 4 ATVAFAR Unmodified 734.40752 0.40752338 999 P0AG96 secE Protein translocase subunit SecE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.529 16.129 2 0.0011398 4627 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 135.5 113.21 496500000 13510000 18731000 14751000 3954100 3739900 4039300 0 39074000 39036000 13020000 12855000 13244000 43161000 33583000 37787000 0 0 913470 56712000 63595000 60555000 7775300 7459500 9002700 2219 999 2146 43040;43041;43042;43043;43044;43045;43046;43047;43048;43049;43050;43051;43052;43053;43054;43055;43056;43057;43058;43059;43060;43061 26278;26279;26280;26281;26282;26283;26284;26285;26286;26287;26288;26289;26290;26291;26292;26293;26294;26295 26280 17 ATVAYIPK Unmodified 861.496 0.49600404 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 19.228 19.838 2 0.013338 7473 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.637 58.139 1347900000 235820000 204980000 186500000 0 0 0 0 0 0 0 0 0 105100000 103270000 86092000 0 0 0 135140000 147080000 143900000 0 0 0 2220 279 2147 43062;43063;43064;43065;43066;43067;43068;43069;43070 26296;26297;26298;26299;26300 26297 5 ATVDKPCPVNMTNHVYFNLDGEQSDVR Unmodified 3105.4284 0.42841812 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 1 1 2 2 2 2 2 2 33.727 32.318 3;4 1.6935E-16 15433 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.97 151.71 886300000 135440000 125450000 120730000 0 0 0 96100000 13617000 14046000 0 0 0 61679000 55979000 46583000 0 0 0 70639000 76769000 69275000 0 0 0 2221 507 2148 43071;43072;43073;43074;43075;43076;43077;43078;43079;43080;43081;43082;43083;43084;43085;43086;43087;43088;43089;43090;43091;43092 26301;26302;26303;26304;26305;26306;26307 26304 7 ATVELLNR Unmodified 914.51853 0.5185304 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.859 22.179 2 0.00069413 9445 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 127.12 102.49 1996400000 629570000 3595800 570040000 11584000 11033000 10606000 207180000 178710000 173430000 12576000 15533000 18124000 26723000 14819000 0 0 0 0 37162000 42718000 32968000 0 0 0 2222 677 2149 43093;43094;43095;43096;43097;43098;43099;43100;43101;43102;43103;43104;43105;43106;43107;43108;43109;43110;43111 26308;26309;26310;26311;26312;26313;26314;26315;26316 26311 6 ATVFEDPELSDWLPYQDK Unmodified 2152.0001 6.61646E-05 1704 P65367 yqcA Uncharacterized protein YqcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.235 52.781 2 7.5086E-10 26012 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 129.29 120.24 258110000 35476000 31073000 29453000 0 0 0 23663000 23075000 22494000 0 0 0 21262000 18076000 0 0 0 0 16889000 17994000 18653000 0 0 0 2223 1704 2150 43112;43113;43114;43115;43116;43117;43118;43119;43120;43121;43122 26317;26318;26319 26318 3 ATVFIFPDLNTGNTTYK Unmodified 1900.9571 0.95707914 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 2 2 2 1 1 1 2 1 2 1 1 2 2 2 51.19 49.993 2;3 2.082E-19 23256 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 241.17 240.16 3709600000 0 0 0 2199800 2365900 1794200 402090000 366190000 371850000 16958000 14723000 16714000 482370000 411480000 461020000 2558700 4600900 0 379160000 386880000 386660000 0 0 0 2224 539 2151 43123;43124;43125;43126;43127;43128;43129;43130;43131;43132;43133;43134;43135;43136;43137;43138;43139;43140;43141;43142;43143;43144;43145;43146;43147 26320;26321;26322;26323;26324;26325;26326;26327;26328;26329;26330;26331 26331 12 ATVILAHTIK Unmodified 1065.6546 0.65462995 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 7 3 7 3 3 3 4 2 3 2 2 2 2 4 2 2 3 3 4 4 4 18.55 18.87 2;3 2.1403E-05 5442 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 166.61 152.97 47087000000 722700000 828960000 784780000 3301400000 5791200000 5210300000 1524300000 1396700000 1691300000 689620000 525310000 406450000 729230000 721730000 819100000 333370000 210460000 262120000 1449400000 1476800000 1190500000 6660400000 4943400000 5417800000 2225 939 2152 43148;43149;43150;43151;43152;43153;43154;43155;43156;43157;43158;43159;43160;43161;43162;43163;43164;43165;43166;43167;43168;43169;43170;43171;43172;43173;43174;43175;43176;43177;43178;43179;43180;43181;43182;43183;43184;43185;43186;43187;43188;43189;43190;43191;43192;43193;43194;43195;43196;43197;43198;43199;43200;43201;43202;43203;43204;43205;43206;43207;43208;43209;43210;43211;43212;43213;43214;43215;43216;43217;43218;43219;43220;43221;43222;43223;43224;43225;43226 26332;26333;26334;26335;26336;26337;26338;26339;26340;26341;26342;26343;26344;26345;26346;26347;26348;26349;26350;26351;26352;26353;26354;26355;26356;26357;26358;26359;26360;26361;26362;26363;26364;26365;26366;26367;26368;26369;26370;26371;26372;26373;26374;26375;26376;26377;26378;26379;26380;26381;26382;26383;26384;26385;26386;26387;26388;26389;26390;26391;26392;26393;26394;26395;26396;26397;26398;26399;26400;26401;26402;26403;26404;26405;26406;26407;26408;26409;26410;26411;26412;26413;26414;26415;26416;26417;26418;26419;26420;26421 26354 90 ATVLATGGAGR Unmodified 972.53524 0.53524309 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.759 14.383 2 4.269E-10 4228 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 180.87 124.97 1685600000 88600000 75503000 58664000 32519000 33823000 34227000 90909000 82069000 87802000 13112000 15010000 13673000 114080000 117600000 107610000 0 3341600 4287100 220300000 237560000 208640000 16748000 14724000 14834000 2226 698 2153 43227;43228;43229;43230;43231;43232;43233;43234;43235;43236;43237;43238;43239;43240;43241;43242;43243;43244;43245;43246;43247;43248;43249 26422;26423;26424;26425;26426;26427;26428;26429;26430 26430 9 ATVLGHIQR Unmodified 993.57196 0.57196295 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.276 14.152 2 8.2986E-08 4481 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 186.94 168.91 1831500000 165850000 146070000 130680000 938260 0 0 204980000 215530000 222060000 0 0 0 131060000 148360000 122280000 0 0 0 118420000 128100000 97214000 0 0 0 2227 320 2154 43250;43251;43252;43253;43254;43255;43256;43257;43258;43259;43260;43261;43262 26431;26432;26433;26434;26435;26436;26437;26438;26439;26440;26441;26442 26437 12 ATVNQLVR Unmodified 899.51886 0.51886475 367 P0A7S3 rpsL 30S ribosomal protein S12 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.782 17.161 2 0.00051593 4848 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 134.66 117.7 1074100000 0 0 0 48914000 47133000 42274000 0 0 0 75045000 37134000 22046000 0 306230000 334150000 35436000 28543000 29883000 4057600 0 0 19974000 19559000 23754000 2228 367 2155 43263;43264;43265;43266;43267;43268;43269;43270;43271;43272;43273;43274;43275;43276;43277 26443;26444;26445;26446;26447;26448;26449;26450;26451;26452;26453;26454;26455 26443 12 ATVQAIQWLTR Unmodified 1285.7143 0.71427009 1809 P76035 yciW Uncharacterized protein YciW yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.513 39.839 2 4.6059E-06 18706 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 152.97 131.51 117070000 16902000 11540000 13262000 0 0 0 8355300 10888000 6055900 0 0 0 6571400 5210600 4312900 0 0 0 11544000 12190000 10236000 0 0 0 2229 1809 2156 43278;43279;43280;43281;43282;43283;43284;43285;43286;43287;43288;43289 26456;26457;26458;26459 26458 2 ATVSDLGPLLLAR Unmodified 1324.7715 0.77145062 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.944 46.524 2 7.6731E-07 22695 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.45 113.14 126100000 22690000 20512000 16796000 4051500 5828800 3593100 10570000 9516900 8767800 0 0 0 5360700 3832600 3540800 0 0 0 0 6113500 4922600 0 0 0 2230 1528 2157 43290;43291;43292;43293;43294;43295;43296;43297;43298;43299;43300;43301;43302;43303 26460;26461;26462;26463;26464;26465;26466;26467 26464 8 ATVSRPVSHQR Unmodified 1236.6687 0.66871688 80 P03018 uvrD DNA helicase II yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 10.57 10.551 3 0.00013958 1988 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 86.014 83.602 77712000 0 0 0 0 0 0 0 0 0 0 2024600 0 0 0 0 11882000 25825000 37980000 0 0 0 0 0 0 2231 80 2158 43304;43305;43306;43307 26468;26469;26470 26470 3 ATVTGDGLSQEAK Unmodified 1275.6307 0.63065962 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 3 2 3 4 4 1 1 2 2 2 2 1 1 1 1 2 1 1 1 1 14.782 15.454 2;3 3.9236E-31 5048 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 250.76 229.3 6840200000 1078300000 1095000000 1063500000 312930000 318260000 310910000 497480000 518210000 522600000 155960000 145690000 151220000 87115000 82523000 88278000 0 0 0 125020000 113690000 110090000 22835000 21128000 19471000 2232 783 2159 43308;43309;43310;43311;43312;43313;43314;43315;43316;43317;43318;43319;43320;43321;43322;43323;43324;43325;43326;43327;43328;43329;43330;43331;43332;43333;43334;43335;43336;43337;43338;43339;43340;43341;43342;43343;43344;43345 26471;26472;26473;26474;26475;26476;26477;26478;26479;26480;26481;26482;26483;26484;26485;26486;26487;26488;26489;26490;26491;26492;26493 26485 23 ATYHGNIDKPAVTCTPNPQR Unmodified 2239.0804 0.080398946 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 3 3 3 2 2 1 3 3 3 2 2 2 14.499 15.088 2;3;4 6.6664E-23 4928 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 224.33 221.54 1679900000 0 0 0 3883600 4873200 4375800 129260000 145660000 128090000 7238300 8844100 7281000 195740000 172700000 157780000 8556900 12892000 4903600 218960000 187690000 254550000 11280000 7911000 7462600 2233 38 2160 43346;43347;43348;43349;43350;43351;43352;43353;43354;43355;43356;43357;43358;43359;43360;43361;43362;43363;43364;43365;43366;43367;43368;43369;43370;43371;43372;43373;43374;43375;43376;43377;43378;43379;43380;43381;43382;43383;43384;43385;43386;43387;43388;43389;43390;43391;43392;43393;43394;43395 26494;26495;26496;26497;26498;26499;26500;26501;26502;26503;26504;26505;26506;26507;26508;26509;26510;26511;26512;26513;26514;26515;26516;26517;26518;26519;26520;26521;26522;26523;26524;26525;26526;26527;26528 26511 35 ATYIVVHDGMGK Unmodified 1289.6438 0.64380726 1705 P65556 yfcD Uncharacterized Nudix hydrolase YfcD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 19.185 19.724 2;3 1.1104E-06 7515 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 150.61 145.7 997060000 90861000 84769000 78945000 0 542900 0 95222000 96590000 101130000 0 0 988110 76868000 80318000 72545000 0 0 0 30908000 99261000 88118000 0 0 0 2234 1705 2161 43396;43397;43398;43399;43400;43401;43402;43403;43404;43405;43406;43407;43408;43409;43410;43411;43412;43413;43414;43415;43416;43417;43418;43419;43420;43421 26529;26530;26531;26532;26533;26534;26535;26536;26537;26538;26539;26540;26541;26542;26543;26544;26545;26546;26547 26537 18 ATYLIGDVHGCYDELIALLHK Unmodified 2400.2148 0.21476716 113 P05637 apaH Bis(5'-nucleosyl)-tetraphosphatase [symmetrical] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.163 50.915 4 9.4443E-07 24878 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.492 91.099 264100000 28639000 28906000 30496000 0 0 0 12997000 21145000 17309000 0 0 0 12680000 14605000 18902000 0 0 0 25230000 25478000 27716000 0 0 0 2235 113 2162 43422;43423;43424;43425;43426;43427;43428;43429;43430;43431;43432;43433 26548;26549;26550;26551;26552;26553;26554;26555 26552 8 ATYSINNDGITLHLNGADDLGLIQR Unmodified 2683.3566 0.35655703 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.75 46.336 3 1.0685E-40 22731 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 209.56 202.53 438300000 34874000 40729000 30300000 0 0 0 45343000 39393000 36060000 0 0 0 34352000 40668000 36451000 0 0 0 32381000 34217000 33529000 0 0 0 2236 1456 2163 43434;43435;43436;43437;43438;43439;43440;43441;43442;43443;43444;43445 26556;26557;26558;26559;26560;26561;26562;26563;26564;26565;26566;26567 26562 12 ATYTQTHMDFIIEAFK Unmodified 1914.9186 0.91858514 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 9 6 9 3 2 2 6 7 6 1 1 1 4 4 8 6 6 9 1 1 1 48.65 47.207 2;3 1.2255E-30 21686 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 260.97 259.06 15453000000 2304800000 1972900000 1962800000 21660000 21317000 19442000 1636400000 1531900000 1243800000 6261400 7116500 5064700 739520000 674130000 875660000 0 0 0 807250000 837980000 774670000 3837400 3267800 3657900 2237 397 2164 43446;43447;43448;43449;43450;43451;43452;43453;43454;43455;43456;43457;43458;43459;43460;43461;43462;43463;43464;43465;43466;43467;43468;43469;43470;43471;43472;43473;43474;43475;43476;43477;43478;43479;43480;43481;43482;43483;43484;43485;43486;43487;43488;43489;43490;43491;43492;43493;43494;43495;43496;43497;43498;43499;43500;43501;43502;43503;43504;43505;43506;43507;43508;43509;43510;43511;43512;43513;43514;43515;43516;43517;43518;43519;43520;43521;43522;43523;43524;43525;43526;43527;43528;43529;43530;43531;43532;43533;43534;43535;43536;43537;43538 26568;26569;26570;26571;26572;26573;26574;26575;26576;26577;26578;26579;26580;26581;26582;26583;26584;26585;26586;26587;26588;26589;26590;26591;26592;26593;26594;26595;26596;26597;26598;26599;26600;26601;26602;26603;26604;26605;26606;26607;26608;26609;26610;26611;26612;26613;26614;26615;26616;26617;26618;26619;26620;26621;26622;26623;26624;26625;26626;26627;26628;26629;26630;26631;26632;26633;26634;26635;26636;26637;26638;26639;26640;26641;26642;26643;26644;26645;26646;26647;26648;26649;26650;26651;26652;26653;26654;26655;26656;26657;26658;26659;26660;26661;26662;26663;26664;26665;26666;26667;26668;26669;26670;26671;26672;26673;26674 26646 98 ATYTQTHMDFIIEAFK Oxidation (M) 1930.9135 0.91349976 397 P0A853 tnaA Tryptophanase yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.418 36.738 3 0.0080243 17877 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.892 43.604 175150000 27466000 24512000 27752000 0 0 0 20238000 22895000 16598000 0 0 0 6604900 5814300 7163500 0 0 0 6726400 0 9381200 0 0 0 2238 397 2164 43539;43540;43541;43542;43543;43544;43545;43546;43547;43548;43549 26675 26675 184 1 ATYYSNDFR Unmodified 1135.4934 0.49343786 265 P0A6N4 efp Elongation factor P yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 20.443 20.699 2 4.4453E-08 7793 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 194.44 185.06 4133300000 347940000 386580000 412110000 0 0 0 284030000 297100000 317930000 0 2162500 1577400 327740000 325660000 287340000 1981000 1346300 2271700 398960000 380500000 358060000 0 0 0 2239 265 2165 43550;43551;43552;43553;43554;43555;43556;43557;43558;43559;43560;43561;43562;43563;43564;43565;43566;43567 26676;26677;26678;26679;26680;26681;26682;26683;26684;26685;26686;26687 26686 12 AVAAALEQMPR Unmodified 1155.607 0.60702783 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 26.823 25.659 2;3 7.4024E-15 11796 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 222.19 219.82 38748000000 1446500000 1324700000 1132800000 3511400000 3395400000 3905800000 1379900000 1355500000 1319600000 511520000 511110000 389170000 751660000 879590000 786880000 149400000 114010000 115470000 1629000000 1493400000 1528800000 3954300000 3753300000 3409100000 2240 133 2166 43568;43569;43570;43571;43572;43573;43574;43575;43576;43577;43578;43579;43580;43581;43582;43583;43584;43585;43586;43587;43588;43589;43590;43591;43592;43593;43594;43595;43596;43597;43598;43599;43600;43601;43602;43603;43604;43605;43606;43607;43608;43609;43610;43611;43612;43613;43614;43615 26688;26689;26690;26691;26692;26693;26694;26695;26696;26697;26698;26699;26700;26701;26702;26703;26704;26705;26706;26707;26708;26709;26710;26711;26712;26713;26714;26715;26716;26717;26718;26719;26720;26721;26722;26723;26724;26725;26726;26727;26728;26729;26730;26731;26732;26733;26734 26700 47 AVAAALEQMPR Oxidation (M) 1171.6019 0.60194245 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 11 9 9 3 3 4 5 6 3 2 2 1 1 1 5 3 3 11 11 9 20.532 20.432 2;3 1.1767E-07 5360 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 138.1 134.35 838590000 6072700 6857600 6567400 95193000 124280000 132930000 18451000 26002000 25574000 14371000 13120000 5129000 5079300 7209400 0 1218300 830300 699130 24041000 16991000 19523000 99370000 108830000 80254000 2241 133 2166 43616;43617;43618;43619;43620;43621;43622;43623;43624;43625;43626;43627;43628;43629;43630;43631;43632;43633;43634;43635;43636;43637;43638;43639;43640;43641;43642;43643;43644;43645;43646;43647;43648;43649;43650;43651;43652;43653;43654;43655;43656;43657;43658;43659;43660;43661;43662;43663;43664;43665;43666;43667;43668;43669;43670;43671;43672;43673;43674;43675;43676;43677;43678;43679;43680;43681;43682;43683;43684;43685;43686;43687;43688;43689;43690;43691;43692;43693;43694;43695;43696;43697;43698;43699;43700;43701;43702;43703;43704;43705;43706;43707;43708;43709;43710;43711;43712;43713;43714;43715;43716;43717;43718;43719;43720 26735;26736;26737;26738;26739;26740;26741;26742;26743;26744;26745;26746;26747;26748;26749;26750;26751;26752;26753;26754;26755;26756;26757;26758;26759;26760;26761;26762;26763;26764;26765;26766;26767;26768;26769;26770;26771;26772;26773;26774;26775;26776;26777;26778;26779;26780;26781;26782;26783;26784;26785;26786;26787;26788;26789;26790;26791;26792;26793;26794;26795;26796;26797;26798;26799;26800;26801;26802;26803;26804;26805;26806;26807;26808;26809;26810 26783 39 73 AVAAGMNPMDLK Unmodified 1216.5944 0.59441423 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.509 29.115 2 1.0278E-05 13372 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 129.83 110.04 17553000000 1852800000 1812800000 1648300000 23588000 23119000 23171000 1271600000 1375300000 1270100000 26619000 25442000 25469000 1177900000 1115800000 1156000000 9811700 6419000 6719700 1524200000 1573300000 1525400000 26407000 25462000 26756000 2242 240 2167 43721;43722;43723;43724;43725;43726;43727;43728;43729;43730;43731;43732;43733;43734;43735;43736;43737;43738;43739;43740;43741;43742;43743;43744 26811;26812;26813;26814;26815;26816;26817;26818;26819;26820;26821;26822;26823;26824;26825;26826 26823 15 AVAAGMNPMDLK Oxidation (M) 1232.5893 0.58932885 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 3 1 2 1 2 2 1 2 2 2 23.005 22.427 2 0.00059938 9100 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 72.325 64.393 484280000 47775000 72199000 62660000 0 277240 295810 81042000 20095000 34287000 583980 0 0 25759000 20060000 11447000 0 0 0 38230000 34028000 35537000 0 0 0 2243 240 2167 43745;43746;43747;43748;43749;43750;43751;43752;43753;43754;43755;43756;43757;43758;43759;43760;43761;43762;43763;43764;43765;43766;43767;43768;43769;43770 26827;26828;26829;26830;26831;26832;26833;26834;26835;26836;26837;26838;26839;26840;26841;26842 26837 96;97 13 AVAAGMNPMDLK 2 Oxidation (M) 1248.5842 0.58424348 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 2 0 By MS/MS By MS/MS 1 1 13.964 14.998 2 0.013441 4553 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 55.567 47.635 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2244 240 2167 43771;43772 26843;26844 26844 96;97 2 AVAAGMNPMDLKR Unmodified 1372.6955 0.69552526 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 2 2 2 2 2 1 2 2 2 1 1 1 1 1 1 1 1 2 2 2 23.436 22.678 2;3 1.4753E-07 7616 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 123.95 116.82 329180000 4783500 9865200 6430700 32549000 37582000 29124000 0 4221700 0 34514000 27581000 25815000 2242600 3068000 4950200 6242000 9499000 10940000 1416600 3610800 0 23731000 24387000 26628000 2245 240 2168 43773;43774;43775;43776;43777;43778;43779;43780;43781;43782;43783;43784;43785;43786;43787;43788;43789;43790;43791;43792;43793;43794;43795;43796;43797;43798;43799;43800;43801;43802;43803;43804 26845;26846;26847;26848;26849;26850;26851;26852;26853;26854;26855 26853 11 AVAAMASFFR Unmodified 1069.5379 0.53788563 332 P0A7D1 pth Peptidyl-tRNA hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 39.709 38.357 2 0.00022742 17921 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 118.74 114.06 76363000 11635000 10212000 11593000 0 0 0 0 0 0 0 0 0 6553300 7560600 6116900 1178000 0 0 5123800 8518000 7872800 0 0 0 2246 332 2169 43805;43806;43807;43808;43809;43810;43811;43812;43813;43814 26856;26857;26858;26859;26860;26861;26862;26863 26862 8 AVAANKR Unmodified 728.42932 0.42932146 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 5.8938 6.6004 2 0.0013482 761 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 137.2 123.99 705070000 36331000 42685000 36173000 602930 158520 141200 0 0 0 0 0 0 27261000 35456000 32897000 163760000 96895000 81103000 57430000 49430000 43407000 1332200 0 0 2247 712 2170 43815;43816;43817;43818;43819;43820;43821;43822;43823;43824;43825;43826;43827;43828;43829;43830;43831 26864;26865;26866;26867;26868;26869;26870;26871;26872;26873;26874;26875 26875 12 AVAAVNGPIAQALIGK Unmodified 1491.8773 0.87731267 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 4 5 5 2 2 2 5 3 4 1 1 3 3 3 2 2 2 41.342 39.56 2;3 3.9322E-10 16397 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 182.71 181.67 12407000000 809750000 774170000 718080000 14205000 14681000 12640000 1599900000 1599200000 1549100000 15016000 16540000 13403000 847560000 795550000 789280000 6630800 0 2017900 953480000 937220000 914050000 8838000 6980500 8670900 2248 270 2171 43832;43833;43834;43835;43836;43837;43838;43839;43840;43841;43842;43843;43844;43845;43846;43847;43848;43849;43850;43851;43852;43853;43854;43855;43856;43857;43858;43859;43860;43861;43862;43863;43864;43865;43866;43867;43868;43869;43870;43871;43872;43873;43874;43875;43876;43877;43878;43879;43880;43881;43882;43883;43884;43885;43886;43887;43888;43889;43890;43891;43892;43893;43894 26876;26877;26878;26879;26880;26881;26882;26883;26884;26885;26886;26887;26888;26889;26890;26891;26892;26893;26894;26895;26896;26897;26898;26899;26900;26901;26902;26903;26904;26905;26906;26907;26908;26909;26910;26911;26912;26913;26914;26915;26916;26917 26876 36 AVAAYVDIAR Unmodified 1047.5713 0.57129425 556 P0A9T4 tas Protein tas yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.549 24.652 2;3 0.00012035 11483 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.61 106.48 655130000 49029000 49429000 50671000 0 0 0 81448000 75093000 75307000 1099900 0 0 47706000 46710000 44510000 1508700 2145400 2787000 39481000 42855000 41445000 1409500 1403200 1092400 2249 556 2172 43895;43896;43897;43898;43899;43900;43901;43902;43903;43904;43905;43906;43907;43908;43909;43910;43911;43912;43913 26918;26919;26920;26921;26922;26923;26924;26925;26926;26927;26928;26929;26930 26929 10 AVADFEYEMQLAHMNR Unmodified 1923.8608 0.86075269 249 P0A6I6 coaD Phosphopantetheine adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.24 37.566 3 0.011534 18216 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 54.598 50.994 242970000 24282000 21237000 20072000 0 0 0 19307000 16867000 16611000 0 0 0 16750000 20693000 14004000 0 0 0 23019000 26874000 23258000 0 0 0 2250 249 2173 43914;43915;43916;43917;43918;43919;43920;43921;43922;43923;43924;43925 26931;26932;26933;26934;26935 26935 0 AVAEAAAK Unmodified 729.4021 0.40210366 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 6.5746 7.4811 2 0.015552 1936 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 69.998 32.905 133100000 12315000 8034400 9461100 511740 1075500 1555700 18992000 15423000 17072000 0 0 0 7406700 7966800 5789600 0 0 0 9801500 8189800 9504500 0 0 0 2251 1789 2174 43926;43927;43928;43929;43930;43931;43932;43933;43934;43935;43936;43937;43938;43939;43940;43941 26936;26937;26938;26939;26940;26941;26942;26943;26944 26938 9 AVAEACGSQAVIVR Unmodified 1429.7347 0.73474754 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 2 2 2 1 2 1 20.477 20.725 2;3 4.9783E-11 8380 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 169.93 130.09 3557400000 181330000 186380000 175690000 7858900 6896500 7897900 310160000 230050000 247240000 10265000 6380900 5302600 343990000 330170000 292410000 1882600 1264700 0 424970000 387290000 389760000 4054000 2727100 3428200 2252 192 2175 43942;43943;43944;43945;43946;43947;43948;43949;43950;43951;43952;43953;43954;43955;43956;43957;43958;43959;43960;43961;43962;43963;43964;43965;43966;43967;43968;43969;43970;43971;43972;43973;43974;43975;43976;43977;43978;43979;43980;43981 26945;26946;26947;26948;26949;26950;26951;26952;26953;26954;26955;26956;26957;26958;26959;26960;26961;26962;26963;26964;26965;26966;26967;26968;26969;26970;26971;26972;26973;26974;26975;26976;26977;26978;26979;26980 26950 36 AVAEATPYEPAGK Unmodified 1302.6456 0.6455814 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.144 17.605 2 5.0694E-06 6390 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.03 120.76 177640000 10990000 0 8052200 2813100 1841000 1553900 19957000 15719000 16971000 5737200 4230400 4149600 14283000 9107800 13030000 1338600 972690 877610 18930000 0 19658000 2584500 3213200 1628900 2253 1167 2176 43982;43983;43984;43985;43986;43987;43988;43989;43990;43991;43992;43993;43994;43995;43996;43997;43998;43999;44000;44001;44002;44003 26981;26982;26983;26984;26985;26986;26987 26984 7 AVAEAYYASR Unmodified 1099.5298 0.52982336 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.835 17.32 2 8.6536E-09 6106 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.55 162.51 1530500000 111900000 105340000 95271000 8448800 6806700 9162100 133990000 136450000 127270000 83717000 51074000 22136000 71819000 72954000 86787000 15816000 15578000 15375000 112470000 98315000 100910000 19168000 14639000 15154000 2254 61 2177 44004;44005;44006;44007;44008;44009;44010;44011;44012;44013;44014;44015;44016;44017;44018;44019;44020;44021;44022;44023;44024;44025;44026;44027 26988;26989;26990;26991;26992;26993;26994;26995;26996;26997;26998;26999;27000;27001;27002;27003;27004;27005;27006;27007;27008;27009;27010;27011 27007 24 AVAEGANMPTTIEATELFQQAGVLFAPGK Unmodified 2960.4954 0.4953587 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 55.35 53.89 2;3 9.9722E-16 26860 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 196.71 179.63 360310000 125730000 110990000 97683000 0 0 0 0 5586600 0 0 0 0 0 0 0 0 0 0 9018300 5834700 5465300 0 0 0 2255 26 2178 44028;44029;44030;44031;44032;44033;44034;44035;44036;44037 27012;27013;27014;27015;27016 27012 5 AVAEGASK Unmodified 731.38137 0.38136821 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 1 1 1 2 1 5.6497 6.5528 2 0.0023436 1029 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 101.28 51.164 5894100000 679230000 630720000 564950000 17240 130160 0 1078300000 1301700000 1214500000 0 0 0 144750000 144860000 134870000 0 0 0 0 0 0 0 0 0 2256 428 2179 44038;44039;44040;44041;44042;44043;44044;44045;44046;44047;44048;44049;44050 27017;27018;27019;27020;27021;27022;27023;27024;27025 27018 9 AVAEGASKVDGAEVVVK Unmodified 1627.8781 0.87810054 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 17.966 18.483 3 0.05032 5126 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 37.092 25.4 6701900 0 0 0 2274500 1694300 1464500 0 0 0 0 0 1268700 0 0 0 0 0 0 0 0 0 0 0 0 2257 428 2180 44051;44052;44053;44054 27026 27026 1 AVAEVYASSDAHEK Unmodified 1475.6892 0.68923713 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 15.356 15.993 2;3 7.6857E-17 3624 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 159.94 155.47 2600200000 219410000 182150000 221280000 3699900 3206500 4884400 362610000 271090000 353130000 1733200 5181000 923230 148040000 131200000 155690000 13068000 13878000 12888000 202790000 154570000 138750000 0 0 0 2258 1086 2181 44055;44056;44057;44058;44059;44060;44061;44062;44063;44064;44065;44066;44067;44068;44069;44070;44071;44072;44073;44074;44075;44076;44077;44078;44079;44080;44081;44082;44083;44084;44085;44086;44087;44088;44089;44090;44091;44092;44093;44094;44095;44096;44097;44098;44099;44100;44101;44102 27027;27028;27029;27030;27031;27032;27033;27034;27035;27036;27037;27038;27039;27040;27041;27042;27043;27044;27045;27046;27047;27048;27049;27050;27051;27052;27053;27054 27052 27 AVAFALFGLQDR Unmodified 1306.7034 0.70337105 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.351 50.211 2 6.6439E-12 24462 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 192.92 155.73 296570000 21476000 21298000 23327000 3317100 3594800 3445600 25174000 23494000 25317000 3962200 3742900 3770600 13566000 12753000 14459000 4291900 1732800 2258000 25553000 23617000 26066000 3692600 3583300 3079800 2259 1388 2182 44103;44104;44105;44106;44107;44108;44109;44110;44111;44112;44113;44114;44115;44116;44117;44118;44119;44120;44121;44122;44123;44124;44125;44126 27055;27056;27057;27058;27059;27060;27061;27062;27063 27056 9 AVAFMMDDALLAGER Unmodified 1608.764 0.76399875 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 1 1 1 2 2 2 50.475 49.07 2;3 7.6533E-15 23978 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 223.78 222.11 299010000 56409000 56584000 54156000 0 0 0 16339000 11657000 15220000 0 0 0 10775000 9695700 11812000 0 0 0 22740000 16002000 17618000 0 0 0 2260 1501 2183 44127;44128;44129;44130;44131;44132;44133;44134;44135;44136;44137;44138;44139;44140;44141;44142;44143;44144;44145;44146 27064;27065;27066;27067;27068;27069 27066 6 AVAGLHIAPEYVLIDGNR Unmodified 1907.0265 0.026496107 1059 P10442 rnhB Ribonuclease HII yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 41.336 39.575 3 0.019774 19370 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 44.391 42.568 124100000 5410300 5705900 6368900 0 0 0 8585700 7725100 7000200 1231600 0 0 9710400 9306500 9090100 0 0 0 17111000 18917000 17941000 0 0 0 2261 1059 2184 44147;44148;44149;44150;44151;44152;44153;44154;44155;44156;44157;44158;44159 27070 27070 0 AVAGQANLLDKDGQIIDGGK Unmodified 1982.0433 0.043268383 912 P0AF52 ghxP Guanine/hypoxanthine permease GhxP yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.826 27.455 3 0.0027082 9209 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 41.912 37.108 51519000 8745200 8352100 6788800 2905800 2198700 2859800 0 0 0 0 1676800 1496000 3075400 0 3016900 0 0 0 4348300 4217000 0 0 0 1837800 2262 912 2185 44160;44161;44162;44163;44164;44165;44166;44167;44168;44169;44170;44171;44172 27071;27072 27072 2 AVAHPELFLSEAK Unmodified 1410.7507 0.75071518 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.185 26.96 3 0.00042632 12175 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 69.716 66.849 288200000 22696000 23319000 18148000 5088900 5663600 5608900 21797000 23865000 18487000 0 0 0 23951000 16758000 19206000 0 0 0 30693000 29159000 23761000 0 0 0 2263 1167 2186 44173;44174;44175;44176;44177;44178;44179;44180;44181;44182;44183;44184;44185;44186;44187 27073;27074;27075;27076;27077;27078;27079;27080;27081;27082;27083 27080 11 AVAIDMESATIAAQGYR Unmodified 1765.8669 0.86688392 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 39.235 37.562 2;3 5.8618E-11 18510 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 207.44 202.74 723690000 58107000 52172000 48675000 0 0 0 62689000 52003000 53806000 0 0 0 61623000 48646000 53209000 0 0 0 86332000 77198000 69236000 0 0 0 2264 828 2187 44188;44189;44190;44191;44192;44193;44194;44195;44196;44197;44198;44199;44200;44201;44202;44203;44204;44205;44206;44207;44208;44209;44210;44211 27084;27085;27086;27087;27088;27089;27090;27091;27092;27093;27094;27095;27096;27097;27098;27099;27100;27101;27102;27103 27088 19 AVAIENLK Unmodified 856.50182 0.5018177 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.548 19.891 2 0.0033984 7619 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 92.467 26.795 4667000000 395810000 344820000 350370000 3557400 4289000 5221200 535270000 606990000 457560000 15240000 11723000 15262000 312470000 274130000 317240000 0 0 0 330690000 309880000 375380000 0 1162400 0 2265 320 2188 44212;44213;44214;44215;44216;44217;44218;44219;44220;44221;44222;44223;44224;44225;44226;44227;44228;44229;44230 27104;27105;27106;27107;27108;27109;27110;27111;27112 27106 9 AVAINEAFQISR Unmodified 1317.7041 0.70409934 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.875 34.199 2 7.974E-12 13117 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 190.88 184.29 230310000 0 0 0 3939000 3822900 3721600 0 7133600 0 9556600 10076000 8634300 0 0 0 0 2708000 2454700 30432000 28270000 27190000 31140000 31766000 29469000 2266 1435 2189 44231;44232;44233;44234;44235;44236;44237;44238;44239;44240;44241;44242;44243;44244;44245 27113;27114;27115;27116;27117;27118;27119 27118 6 AVAIPGYQVPFGGR Unmodified 1430.767 0.76703394 1128 P16688 phnJ Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 41.568 39.823 2 8.4394E-07 19284 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 131.44 113.58 86553000 0 0 0 0 0 0 0 0 0 761540 0 0 6628800 8286800 8692800 0 0 0 23156000 19746000 19281000 0 0 0 2267 1128 2190 44246;44247;44248;44249;44250;44251;44252 27120;27121 27121 2 AVALLAVR Unmodified 811.52797 0.52797287 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.345 27.764 2 0.00062699 13143 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 129.96 105.75 73461000 3834700 1755700 0 835840 979890 807690 13744000 12035000 15138000 4417600 3669100 3718200 0 0 0 0 0 0 4235900 4171600 4118300 0 0 0 2268 1980 2191 44253;44254;44255;44256;44257;44258;44259;44260;44261;44262;44263;44264;44265;44266 27122;27123;27124 27124 3 AVASVLMSK Unmodified 904.50519 0.50518852 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 3 2 2 3 3 3 2 2 2 2 1 1 2 2 2 3 3 3 21.762 21.611 1;2 0.00024271 7150 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 133.23 85.791 6208600000 476230000 472890000 29331000 143710000 180470000 177870000 620740000 614180000 625360000 148660000 162650000 142700000 343680000 297540000 273450000 11092000 9369900 8683100 271160000 289670000 276210000 184620000 209060000 239240000 2269 548 2192 44267;44268;44269;44270;44271;44272;44273;44274;44275;44276;44277;44278;44279;44280;44281;44282;44283;44284;44285;44286;44287;44288;44289;44290;44291;44292;44293;44294;44295;44296;44297;44298;44299;44300;44301;44302;44303;44304;44305;44306;44307;44308;44309;44310;44311;44312;44313;44314;44315;44316;44317;44318 27125;27126;27127;27128;27129;27130;27131;27132;27133;27134;27135;27136;27137;27138;27139;27140;27141;27142;27143;27144;27145;27146;27147 27131 23 AVASVLMSK Oxidation (M) 920.5001 0.50010314 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 2 1 1 1 1 17.551 18.051 2 0.051907 6131 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 55.503 22.145 57858000 8917400 8295900 0 6942000 4795900 6582300 0 0 0 13106000 0 0 0 0 0 0 0 0 6241800 0 0 0 0 2976700 2270 548 2192 44319;44320;44321;44322;44323;44324;44325;44326;44327;44328;44329 27148;27149;27150 27149 3 AVAVDSGVTAVAK Unmodified 1186.6558 0.65575216 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 1 1 1 3 3 4 22 24 21 3 2 3 37 25 29 1 2 5 20 24 28 33.314 32.342 1;2;3 2.9629E-08 9688 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 125.75 101.59 40526000000 492560000 427650000 343440000 35070000 38790000 36124000 357130000 309530000 340780000 3326800000 3129000000 2606800000 419260000 327470000 324720000 6451800000 4772800000 4995300000 438850000 500770000 407220000 3848900000 3327400000 3268000000 2271 463 2193 44330;44331;44332;44333;44334;44335;44336;44337;44338;44339;44340;44341;44342;44343;44344;44345;44346;44347;44348;44349;44350;44351;44352;44353;44354;44355;44356;44357;44358;44359;44360;44361;44362;44363;44364;44365;44366;44367;44368;44369;44370;44371;44372;44373;44374;44375;44376;44377;44378;44379;44380;44381;44382;44383;44384;44385;44386;44387;44388;44389;44390;44391;44392;44393;44394;44395;44396;44397;44398;44399;44400;44401;44402;44403;44404;44405;44406;44407;44408;44409;44410;44411;44412;44413;44414;44415;44416;44417;44418;44419;44420;44421;44422;44423;44424;44425;44426;44427;44428;44429;44430;44431;44432;44433;44434;44435;44436;44437;44438;44439;44440;44441;44442;44443;44444;44445;44446;44447;44448;44449;44450;44451;44452;44453;44454;44455;44456;44457;44458;44459;44460;44461;44462;44463;44464;44465;44466;44467;44468;44469;44470;44471;44472;44473;44474;44475;44476;44477;44478;44479;44480;44481;44482;44483;44484;44485;44486;44487;44488;44489;44490;44491;44492;44493;44494;44495;44496;44497;44498;44499;44500;44501;44502;44503;44504;44505;44506;44507;44508;44509;44510;44511;44512;44513;44514;44515;44516;44517;44518;44519;44520;44521;44522;44523;44524;44525;44526;44527;44528;44529;44530;44531;44532;44533;44534;44535;44536;44537;44538;44539;44540;44541;44542;44543;44544;44545;44546;44547;44548;44549;44550;44551;44552;44553;44554;44555;44556;44557;44558;44559;44560;44561;44562;44563;44564;44565;44566;44567;44568;44569;44570;44571;44572;44573;44574;44575;44576;44577;44578;44579;44580;44581;44582;44583;44584;44585;44586;44587;44588;44589;44590;44591;44592;44593;44594;44595 27151;27152;27153;27154;27155;27156;27157;27158;27159;27160;27161;27162;27163;27164;27165;27166;27167;27168;27169;27170;27171;27172;27173;27174;27175;27176;27177;27178;27179;27180;27181;27182;27183;27184;27185;27186;27187;27188;27189;27190;27191;27192;27193;27194;27195;27196;27197;27198;27199;27200;27201;27202;27203;27204;27205;27206;27207;27208;27209;27210;27211;27212;27213;27214;27215;27216;27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232;27233;27234;27235;27236;27237;27238;27239;27240;27241;27242;27243;27244;27245;27246;27247;27248;27249;27250;27251;27252;27253;27254;27255;27256;27257;27258;27259;27260;27261;27262;27263;27264;27265;27266;27267;27268;27269;27270;27271;27272;27273;27274;27275;27276;27277;27278;27279;27280;27281;27282;27283;27284;27285;27286;27287;27288;27289;27290;27291;27292;27293;27294;27295;27296;27297;27298;27299;27300;27301;27302;27303;27304;27305;27306;27307;27308;27309;27310;27311;27312;27313;27314;27315;27316;27317;27318;27319;27320;27321;27322;27323;27324;27325;27326;27327;27328;27329;27330;27331;27332;27333;27334;27335;27336;27337;27338;27339;27340;27341;27342;27343;27344;27345;27346;27347;27348;27349;27350;27351;27352;27353;27354;27355;27356;27357;27358;27359;27360;27361;27362;27363;27364;27365;27366;27367;27368;27369;27370;27371;27372;27373;27374;27375;27376;27377;27378;27379;27380;27381;27382;27383;27384;27385;27386;27387;27388;27389;27390;27391;27392;27393;27394;27395;27396;27397;27398;27399;27400;27401;27402;27403;27404;27405;27406;27407;27408;27409;27410;27411;27412;27413;27414;27415;27416;27417;27418;27419;27420;27421;27422;27423;27424;27425;27426;27427;27428;27429;27430;27431;27432;27433;27434;27435 27196 255 AVAVDSGVTAVAKR Unmodified 1342.7569 0.75686319 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 2 3 3 4 3 3 2 17.234 17.328 2;3 8.1026E-27 4832 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 243.65 208.21 1480700000 0 0 0 1461700 1678100 1744000 0 0 0 71307000 62584000 44301000 0 0 0 371500000 289030000 283040000 0 0 0 122070000 114700000 117240000 2272 463 2194 44596;44597;44598;44599;44600;44601;44602;44603;44604;44605;44606;44607;44608;44609;44610;44611;44612;44613;44614;44615;44616;44617;44618;44619;44620;44621;44622;44623 27436;27437;27438;27439;27440;27441;27442;27443;27444;27445;27446;27447;27448;27449;27450;27451;27452;27453;27454;27455;27456;27457 27454 21 AVDAINAGQEAVVVLDQTPFYAESGGQVGDK Unmodified 3147.536 0.53603754 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.151 52.712 3 2.9573E-09 25978 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 96.46 86.402 208330000 15905000 18895000 16046000 0 0 0 15893000 15536000 16547000 0 0 0 19556000 20164000 16494000 0 0 0 0 26504000 26789000 0 0 0 2273 59 2195 44624;44625;44626;44627;44628;44629;44630;44631;44632;44633;44634 27458 27458 1 AVDAINAGQEAVVVLDQTPFYAESGGQVGDKGELK Unmodified 3574.7791 0.77912136 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 51.513 50.248 3;4 1.6209E-44 23690 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 219.44 219.01 877480000 56189000 64315000 57846000 3207100 1140400 1571100 81148000 64485000 65572000 0 4995800 5009800 84504000 58526000 56959000 0 0 0 91874000 80152000 99988000 0 0 0 2274 59 2196 44635;44636;44637;44638;44639;44640;44641;44642;44643;44644;44645;44646;44647;44648;44649;44650;44651;44652;44653;44654;44655;44656;44657;44658;44659;44660;44661;44662;44663;44664 27459;27460;27461;27462;27463;27464;27465;27466;27467;27468;27469;27470;27471;27472;27473;27474;27475;27476;27477;27478 27474 20 AVDALAGQSAK Unmodified 1029.5455 0.54547343 187 P08390 usg USG-1 protein yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 14.02 14.586 2 0.013916 3267 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 61.65 27.853 19733000 0 4379000 5231800 1951600 0 1985800 0 0 0 0 0 1836500 0 0 0 0 0 0 0 0 0 1350200 1515200 1482800 2275 187 2197 44665;44666;44667;44668;44669;44670;44671;44672 27479 27479 1 AVDDTYQYGLSAR Unmodified 1457.6787 0.67867245 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.951 25.803 2 6.2838E-24 11774 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 236.35 230.87 301620000 16277000 22940000 18483000 0 0 0 33010000 28993000 33926000 0 0 0 23990000 20852000 17889000 0 0 0 27919000 28235000 29111000 0 0 0 2276 1548 2198 44673;44674;44675;44676;44677;44678;44679;44680;44681;44682;44683;44684 27480;27481;27482;27483;27484;27485;27486 27483 7 AVDELNLITQK Unmodified 1242.682 0.68196691 1593 P50466 aer Aerotaxis receptor yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 33.859 32.397 2 0.0003566 15327 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.029 30.437 43344000 0 8706100 9648500 3161100 3350500 3334900 0 0 0 0 0 0 0 0 0 0 0 0 10905000 0 4238300 0 0 0 2277 1593 2199 44685;44686;44687;44688;44689;44690;44691 27487;27488;27489 27489 3 AVDFMASSQAFR Unmodified 1328.6183 0.6183208 1950 Q2M7R5 yibT Uncharacterized protein YibT yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.069 34.818 2 1.1435E-16 16968 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 203.29 195.1 468800000 45718000 50335000 47442000 5438500 0 0 67877000 68881000 60807000 0 0 0 22192000 17298000 21664000 6105400 3886800 3554400 22531000 12773000 12299000 0 0 0 2278 1950 2200 44692;44693;44694;44695;44696;44697;44698;44699;44700;44701;44702;44703;44704;44705;44706;44707 27490;27491;27492;27493;27494;27495;27496;27497;27498 27495 8 AVDGEMITVTVEGKDEVFALSNIQK Unmodified 2692.3629 0.36294754 415 P0A8A8 rimP Ribosome maturation factor RimP yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 49.334 47.993 3 0.13639 22613 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 23.913 16.636 133030000 8495100 7015100 6440000 0 0 0 0 15191000 15195000 0 0 0 16532000 14350000 17267000 0 0 0 0 15676000 13544000 0 3326800 0 2279 415 2201 44708;44709;44710;44711;44712;44713;44714;44715;44716;44717;44718 27499;27500 27499 2 AVDGVTLR Unmodified 829.46577 0.46576654 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.087 18.507 2 0.00081525 6824 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.99 72.677 788690000 103410000 118140000 93928000 49502000 44048000 45482000 0 36966000 31547000 0 18182000 24194000 22525000 24471000 21362000 2186000 3068600 2527000 35880000 40146000 35109000 15778000 9630600 10610000 2280 1935 2202 44719;44720;44721;44722;44723;44724;44725;44726;44727;44728;44729;44730;44731;44732;44733;44734;44735;44736;44737;44738;44739;44740 27501;27502;27503;27504;27505;27506;27507;27508;27509;27510;27511;27512;27513;27514;27515;27516;27517;27518;27519;27520 27516 19 AVDKFEYR Unmodified 1026.5134 0.51344502 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 14.399 14.617 1 0.020317 3568 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 77.282 65.914 146860000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40153000 52162000 52949000 0 1597300 0 0 0 0 2281 36 2203 44741;44742;44743;44744 27521;27522 27521 2 AVDKFEYRR Unmodified 1182.6146 0.61455605 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 2 2 1 1 12.424 12.602 2;3 6.7615E-05 2807 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 157.96 144.92 1279600000 0 0 0 0 594030 0 0 0 0 1000400 0 734270 0 0 0 583960000 261680000 429570000 0 0 0 1188400 877920 0 2282 36 2204 44745;44746;44747;44748;44749;44750;44751;44752;44753;44754;44755 27523;27524;27525;27526;27527;27528 27523 6 AVDLISNVAGDR Unmodified 1228.6412 0.64116473 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.611 30.231 2 3.6577E-08 14096 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 161.17 128.33 3242300000 255430000 250750000 234240000 1054900 1020700 0 311060000 272100000 256560000 0 0 0 290780000 257360000 282040000 0 0 0 296180000 280980000 252770000 0 0 0 2283 1456 2205 44756;44757;44758;44759;44760;44761;44762;44763;44764;44765;44766;44767;44768;44769 27529;27530;27531;27532;27533;27534;27535;27536;27537;27538;27539;27540 27537 9 AVDLSAEK Unmodified 831.4338 0.43379771 816 P0ADX1 yhfA Protein YhfA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.188 14.054 2 0.00081525 4331 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.99 24.918 911240000 99331000 89949000 79444000 0 0 0 109320000 103260000 95461000 0 0 0 54528000 58924000 43250000 0 0 0 65461000 57376000 54927000 0 0 0 2284 816 2206 44770;44771;44772;44773;44774;44775;44776;44777;44778;44779;44780;44781 27541;27542;27543;27544;27545;27546 27546 6 AVDNALR Unmodified 757.40825 0.40825167 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 13.52 14.268 1;2 0.0016258 3653 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 126.68 66.675 468830000 81962000 68124000 75112000 0 0 0 0 13382000 0 0 0 0 52209000 54055000 45790000 0 3392800 0 0 74799000 0 0 0 0 2285 1298 2207 44782;44783;44784;44785;44786;44787;44788;44789;44790 27547;27548 27548 1 AVDSMIPIGR Unmodified 1057.559 0.559015 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.795 31.348 2 1.5254E-06 11169 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 163.99 148.55 7022100000 199660000 189730000 0 46973000 46602000 47540000 528020000 536410000 528980000 180600000 176950000 188240000 606590000 539720000 557790000 37713000 27876000 36933000 637850000 697550000 701290000 164040000 180550000 164460000 2286 645 2208 44791;44792;44793;44794;44795;44796;44797;44798;44799;44800;44801;44802;44803;44804;44805;44806;44807;44808;44809;44810;44811;44812;44813 27549;27550;27551;27552;27553;27554;27555;27556;27557;27558;27559;27560;27561;27562;27563;27564;27565;27566;27567;27568;27569 27549 21 AVDSMIPIGR Oxidation (M) 1073.5539 0.55392963 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 1 1 1 2 1 2 1 1 24.387 23.439 2 0.0014372 10291 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.741 86.878 128540000 7754800 4097000 0 0 522980 968360 11212000 11495000 9432300 0 0 2191300 8622700 24653000 6549800 0 0 0 28218000 0 9522900 0 0 3300400 2287 645 2208 44814;44815;44816;44817;44818;44819;44820;44821;44822;44823;44824;44825;44826;44827;44828;44829;44830 27570;27571;27572;27573;27574;27575 27572 347 4 AVEAAGGEVCMTR Unmodified 1349.6068 0.60676983 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.103 18.718 2 2.6789E-07 6576 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 164.43 156.2 270020000 17187000 12652000 12124000 0 0 0 28322000 27452000 28635000 0 0 0 23035000 17987000 23585000 0 0 0 27518000 24228000 27292000 0 0 0 2288 97 2209 44831;44832;44833;44834;44835;44836;44837;44838;44839;44840;44841;44842 27576;27577;27578;27579;27580;27581;27582;27583;27584;27585;27586;27587;27588 27588 13 AVEAFTR Unmodified 792.413 0.41300269 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 14.697 15.473 2 0.0025395 4816 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 111.73 84.665 2580200000 242870000 235190000 235010000 2833800 0 0 208890000 258400000 238510000 0 0 0 169270000 145630000 146410000 0 0 0 225790000 244620000 226710000 0 0 0 2289 635 2210 44843;44844;44845;44846;44847;44848;44849;44850;44851;44852;44853;44854;44855 27589;27590;27591;27592;27593;27594;27595;27596;27597;27598;27599;27600 27600 8 AVEALDHCVEEVAK Unmodified 1568.7505 0.75045718 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 1 2 2 2 1 1 2 2 2 1 23.734 22.912 2;3 1.9856E-26 10005 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 233.45 166.85 5867700000 308710000 371010000 232540000 0 1757900 2024000 600700000 618950000 612340000 4432800 4358600 2580200 555440000 627270000 518640000 1138200 1022000 0 467680000 434070000 501880000 1150200 0 0 2290 1487 2211 44856;44857;44858;44859;44860;44861;44862;44863;44864;44865;44866;44867;44868;44869;44870;44871;44872;44873;44874;44875;44876;44877;44878;44879;44880;44881;44882;44883;44884;44885;44886;44887;44888;44889 27601;27602;27603;27604;27605;27606;27607;27608;27609;27610;27611;27612;27613;27614;27615;27616;27617;27618;27619;27620;27621 27605 21 AVEAMPGVMR Unmodified 1059.5205 0.52052101 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.712 23.711 2 2.4464E-05 10008 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 147.52 101.8 1827500000 198240000 151550000 139970000 0 322500 0 128300000 139900000 135100000 0 0 0 159080000 143540000 142350000 0 0 0 169610000 155440000 164050000 0 0 0 2291 715 2212 44890;44891;44892;44893;44894;44895;44896;44897;44898;44899;44900;44901;44902 27622;27623;27624;27625;27626;27627;27628;27629;27630;27631;27632;27633 27632 12 AVEAMPGVMR Oxidation (M) 1075.5154 0.51543563 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 1 0 By MS/MS 1 18.875 19.13 2 0.076495 7387 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 51.854 42.909 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2292 715 2212 44903 27634 27634 1 AVEDHAPILITR Unmodified 1333.7354 0.73539946 1729 P69346 yefM Antitoxin YefM yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 23.809 23.008 3 0.0012698 10072 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 53.448 47.788 124210000 17922000 12609000 14356000 0 0 0 0 0 10688000 0 0 0 10327000 9960900 8626900 0 0 0 12099000 13479000 14142000 0 0 0 2293 1729 2213 44904;44905;44906;44907;44908;44909;44910;44911;44912;44913 27635;27636 27635 2 AVEDLVNTQIR Unmodified 1256.6725 0.67246486 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.342 28.957 2 4.3302E-14 13474 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 238.03 205.19 3088000000 258890000 252290000 233980000 2788200 2697100 3331700 260110000 270000000 266320000 9292100 7569800 7209500 208920000 205770000 204920000 2726700 2223500 2560700 285510000 310740000 276810000 5865700 3598400 3883600 2294 59 2214 44914;44915;44916;44917;44918;44919;44920;44921;44922;44923;44924;44925;44926;44927;44928;44929;44930;44931;44932;44933;44934;44935;44936;44937 27637;27638;27639;27640;27641;27642;27643;27644;27645;27646;27647;27648;27649;27650;27651;27652 27645 16 AVEEGAR Unmodified 730.36097 0.36096712 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 3 3 2 2 2 2 2 2 1 2 2 2 5.6336 6.4622 2 0.0021324 1580 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.7 56.693 3171800000 752430000 781860000 638450000 0 0 0 80407000 82728000 84792000 0 0 0 70012000 60918000 62656000 0 0 0 192270000 185410000 179910000 0 0 0 2295 1264 2215 44938;44939;44940;44941;44942;44943;44944;44945;44946;44947;44948;44949;44950;44951;44952;44953;44954;44955;44956;44957;44958;44959;44960;44961;44962 27653;27654;27655;27656;27657;27658;27659;27660 27657 8 AVEGALASK Unmodified 844.46543 0.46543219 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.179 13.012 2 0.0011824 3718 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 91.069 46.096 877800000 135170000 163440000 139690000 0 0 0 94964000 95684000 95133000 0 0 0 20363000 17519000 18753000 0 0 0 31863000 32893000 32325000 0 0 0 2296 1258 2216 44963;44964;44965;44966;44967;44968;44969;44970;44971;44972;44973;44974 27661;27662;27663;27664;27665;27666;27667;27668;27669;27670 27667 10 AVEGLAPR Unmodified 811.4552 0.45520186 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.931 15.532 2 0.016473 3814 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 68.485 44.512 217110000 22168000 24947000 25360000 2673300 2228000 2331400 16167000 13855000 13474000 4902300 3581800 4935600 0 11100000 9372300 0 0 0 19534000 15996000 17764000 2232100 1887700 2596900 2297 1083 2217 44975;44976;44977;44978;44979;44980;44981;44982;44983;44984;44985;44986;44987;44988;44989;44990;44991;44992;44993;44994 27671;27672;27673;27674;27675;27676 27674 3 AVEGSSFPQVALLVR Unmodified 1571.8671 0.86714192 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 3 3 3 2 2 2 2 2 2 47.87 46.425 2;3 6.4084E-08 23013 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 164.43 142.68 3833700000 368840000 280830000 307400000 0 0 1656600 285070000 274920000 259800000 0 0 0 334930000 330780000 294200000 0 0 0 392350000 352460000 350470000 0 0 0 2298 1120 2218 44995;44996;44997;44998;44999;45000;45001;45002;45003;45004;45005;45006;45007;45008;45009;45010;45011;45012;45013;45014;45015;45016;45017;45018;45019;45020;45021 27677;27678;27679;27680;27681;27682;27683;27684;27685;27686;27687;27688;27689;27690;27691;27692 27683 15 AVEGTPFECLK Unmodified 1249.6013 0.60127375 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.353 28.959 2 1.1838E-05 13517 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 145.17 140.97 7671600000 985050000 927690000 788340000 23600000 24427000 24416000 348640000 334740000 324430000 65452000 61375000 62378000 450440000 449070000 398220000 44889000 27290000 28693000 671640000 735880000 737820000 49138000 53100000 54875000 2299 349 2219 45022;45023;45024;45025;45026;45027;45028;45029;45030;45031;45032;45033;45034;45035;45036;45037;45038;45039;45040;45041;45042;45043;45044;45045 27693;27694;27695;27696;27697;27698;27699;27700;27701;27702;27703;27704;27705;27706;27707;27708;27709;27710;27711;27712;27713;27714;27715;27716 27705 24 AVEGTPFECLKDAFVGPTLIAYSMEHPGAAAR Unmodified 3404.6533 0.65333268 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.998 53 4 2.8575E-07 19252 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 73.616 71.328 134020000 0 0 0 13729000 13188000 13243000 0 0 0 0 9516800 10703000 0 0 0 10708000 10665000 11719000 0 0 0 12949000 10365000 17229000 2300 349 2220 45046;45047;45048;45049;45050;45051;45052;45053;45054;45055;45056 27717;27718;27719 27719 3 AVEHLVK Unmodified 794.46504 0.46503826 568 P0AA04 ptsH Phosphocarrier protein HPr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.001 11.83 2 0.0018451 2884 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.79 80.017 26533000000 1988600000 1748700000 1812800000 1934000 2686000 2092300 2381600000 2463000000 2501800000 0 0 1255400 2546400000 2163300000 1955600000 0 0 0 2596600000 2371300000 1995300000 0 0 0 2301 568 2221 45057;45058;45059;45060;45061;45062;45063;45064;45065;45066;45067;45068;45069;45070;45071;45072 27720;27721;27722;27723;27724;27725;27726;27727;27728;27729;27730;27731 27722 12 AVEIAEAVK Unmodified 928.52295 0.52294707 1255 P25519 hflX GTPase HflX yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 39.647 37.776 2 0.12727 18685 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 40.103 8.1676 38027000 0 2199500 0 0 0 0 7400000 6192900 7431700 0 0 0 0 0 0 0 0 0 8385600 6417100 0 0 0 0 2302 1255 2222 45073;45074;45075;45076;45077;45078 27732 27732 1 AVEIGSFLLGR Unmodified 1160.6554 0.65535823 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 2 3 3 1 1 1 3 3 3 1 1 3 3 2 1 1 1 48.054 46.714 2;3 1.3044E-07 23476 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 198.54 124.42 27969000000 4077600000 3849200000 4006500000 22865000 22789000 30792000 2740700000 2648600000 2400800000 10153000 10516000 7891200 1354500000 1282400000 1297700000 6486600 5594200 0 1348300000 1450700000 1373000000 7349300 6011400 8188500 2303 397 2223 45079;45080;45081;45082;45083;45084;45085;45086;45087;45088;45089;45090;45091;45092;45093;45094;45095;45096;45097;45098;45099;45100;45101;45102;45103;45104;45105;45106;45107;45108;45109;45110;45111;45112;45113;45114;45115;45116;45117;45118;45119;45120;45121 27733;27734;27735;27736;27737;27738;27739;27740;27741;27742;27743;27744;27745;27746;27747;27748;27749;27750;27751;27752;27753;27754;27755;27756;27757;27758;27759;27760;27761;27762;27763;27764;27765;27766;27767;27768;27769;27770;27771;27772;27773;27774;27775 27739 42 AVEIGSFLLGRDPK Unmodified 1500.83 0.83002813 397 P0A853 tnaA Tryptophanase yes yes 0 0 1 By matching By matching By MS/MS By matching 2 2 2 1 39.563 37.674 2;3 0.0037509 13118 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 53.001 48.941 54148000 0 0 0 15376000 20421000 15060000 0 0 0 3291200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2304 397 2224 45122;45123;45124;45125;45126;45127;45128 27776;27777 27776 1 AVEKFDPER Unmodified 1089.5455 0.54547343 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 2 13.497 13.584 2;3 0.00022055 3282 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 149.82 124.08 1058100000 11443000 0 0 0 0 0 0 0 0 10605000 5262000 5957000 0 0 0 340630000 377240000 306940000 0 0 0 0 0 0 2305 1089 2225 45129;45130;45131;45132;45133;45134;45135;45136;45137;45138;45139 27778;27779;27780;27781;27782;27783 27779 6 AVELFSLMMQER Unmodified 1452.7105 0.71050662 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.571 51.285 2 4.7612E-17 24170 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 216.45 213.47 698070000 70018000 63436000 71302000 1294700 1655600 894330 45144000 46022000 38223000 0 1882500 1768000 34957000 39425000 44904000 0 0 0 80750000 76931000 73517000 2124300 1555100 2270500 2306 29 2226 45140;45141;45142;45143;45144;45145;45146;45147;45148;45149;45150;45151;45152;45153;45154;45155;45156;45157;45158;45159 27784;27785;27786;27787;27788;27789;27790 27788 7 AVEQALEDNCPLICFSASGGAR Unmodified 2364.0838 0.083829344 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 45.525 44.051 2;3 2.1914E-43 21333 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 310.74 309.16 962240000 65371000 69807000 63022000 0 0 0 72658000 59985000 68284000 19906000 26496000 18343000 66308000 69519000 58372000 9588000 6638100 4963500 78700000 72722000 81545000 18433000 13422000 18162000 2307 547 2227 45160;45161;45162;45163;45164;45165;45166;45167;45168;45169;45170;45171;45172;45173;45174;45175;45176;45177;45178;45179;45180;45181;45182;45183;45184;45185;45186;45187;45188;45189;45190;45191;45192;45193;45194;45195;45196;45197;45198 27791;27792;27793;27794;27795;27796;27797;27798;27799;27800;27801;27802;27803;27804;27805;27806;27807;27808;27809;27810;27811;27812;27813;27814;27815;27816;27817;27818;27819 27806 26 AVEQVSTEMFR Unmodified 1295.618 0.61798644 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 29.417 28.147 2 3.6847E-14 12953 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 207.68 187.27 1585700000 460360000 441100000 389990000 0 712990 683940 84033000 0 82729000 0 0 0 21232000 0 14817000 0 0 0 45229000 44780000 0 0 0 0 2308 1254 2228 45199;45200;45201;45202;45203;45204;45205;45206;45207;45208;45209 27820;27821;27822;27823;27824 27823 4 AVESGDKKPLR Unmodified 1198.667 0.66698555 371 P0A7U3 rpsS 30S ribosomal protein S19 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 2 2 2 2 1 1 1 2 1 1 2 2 1 1 1 1 2 3 2 1 1 1 8.048 8.7296 2;3 5.3676E-05 1932 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 104.79 87.853 1066200000 129580000 79562000 71197000 15733000 17396000 13567000 40722000 54688000 45345000 66385000 53382000 43516000 24458000 7473700 5592400 28075000 47364000 49467000 56872000 78495000 63499000 30931000 21022000 21869000 2309 371 2229 45210;45211;45212;45213;45214;45215;45216;45217;45218;45219;45220;45221;45222;45223;45224;45225;45226;45227;45228;45229;45230;45231;45232;45233;45234;45235;45236;45237;45238;45239;45240;45241;45242;45243;45244;45245;45246;45247;45248 27825;27826;27827;27828;27829;27830;27831;27832;27833;27834;27835;27836;27837;27838;27839;27840;27841;27842;27843;27844;27845;27846;27847;27848 27827 23 AVESLSLELVLTAHPTEITR Unmodified 2178.1896 0.18959827 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 1 1 2 2 2 48.962 47.623 2;3 1.9803E-07 23183 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 112.06 111.43 427380000 51974000 42318000 45914000 0 0 0 52845000 44184000 44061000 0 0 0 21623000 16458000 19832000 0 0 0 31472000 31520000 25180000 0 0 0 2310 43 2230 45249;45250;45251;45252;45253;45254;45255;45256;45257;45258;45259;45260;45261;45262;45263;45264;45265;45266;45267;45268;45269 27849;27850;27851;27852;27853;27854;27855;27856;27857;27858;27859;27860;27861;27862;27863;27864 27862 13 AVESVGGQLLITADHGNAEQMR Unmodified 2295.1277 0.12774307 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.75 31.342 3 6.494E-22 14321 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 168.27 166.31 781260000 44770000 38382000 33398000 0 0 0 75333000 75657000 73499000 0 0 0 87766000 88273000 72886000 0 0 0 71014000 58489000 61792000 0 0 0 2311 1487 2231 45270;45271;45272;45273;45274;45275;45276;45277;45278;45279;45280;45281 27865;27866;27867;27868;27869;27870 27868 6 AVETIDFMTAHWAHLPYDFLGR Unmodified 2589.2475 0.24746427 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 53.875 52.432 3;4 4.4657E-28 25542 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 184.26 183.96 2116800000 211960000 194160000 115830000 0 0 0 138400000 129210000 124360000 0 0 0 204110000 181710000 158070000 0 0 0 227950000 228940000 202130000 0 0 0 2312 86 2232 45282;45283;45284;45285;45286;45287;45288;45289;45290;45291;45292;45293;45294;45295;45296;45297;45298;45299;45300;45301;45302;45303;45304 27871;27872;27873;27874;27875;27876;27877;27878;27879;27880;27881;27882;27883;27884;27885;27886;27887;27888;27889;27890;27891 27880 21 AVEYFLK Unmodified 868.46945 0.46945494 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.422 27.133 2 0.011149 12329 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 86.086 61.088 1522800000 220010000 156970000 155190000 968550 945030 756190 69032000 82918000 88438000 0 0 0 105770000 101010000 102690000 0 0 0 135220000 154410000 148420000 0 0 0 2313 638 2233 45305;45306;45307;45308;45309;45310;45311;45312;45313;45314;45315;45316;45317;45318;45319 27892;27893;27894;27895;27896;27897;27898;27899;27900;27901 27897 10 AVFALGAGVDSILSK Unmodified 1446.8082 0.80823006 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 44.821 43.887 2;4 1.7993E-08 24333 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 140.39 137.66 430230000 64300000 56882000 52547000 5806800 5681200 3829700 29014000 34154000 32242000 0 0 0 22291000 17707000 21518000 0 0 0 27086000 31448000 25718000 0 0 0 2314 1788 2234 45320;45321;45322;45323;45324;45325;45326;45327;45328;45329;45330;45331;45332;45333;45334;45335;45336;45337 27902;27903;27904;27905;27906;27907;27908;27909;27910;27911 27904 10 AVFHVQSSGR Unmodified 1086.557 0.55704117 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.476 13.184 3 0.033579 3873 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 37.681 22.051 264200000 42923000 42935000 47756000 2561400 1713500 0 0 21654000 14042000 10223000 0 9698900 11824000 12579000 10171000 0 2025400 0 12990000 10576000 7134800 0 3396200 0 2315 658 2235 45338;45339;45340;45341;45342;45343;45344;45345;45346;45347;45348;45349;45350;45351;45352;45353;45354 27912 27912 0 AVFNGLINVAQHAIK Unmodified 1593.8991 0.89911075 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.106 39.44 3 0.00010325 19568 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 78.744 75.986 115800000 12655000 13282000 9365100 0 0 0 13150000 13983000 14566000 0 0 0 5423700 5740800 4573600 0 0 0 6637300 8177000 8243300 0 0 0 2316 1926 2236 45355;45356;45357;45358;45359;45360;45361;45362;45363;45364;45365;45366 27913;27914;27915 27914 3 AVFSSLVLTLR Unmodified 1204.718 0.71795849 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.119 48.694 2 0.00013265 24124 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.62 101.58 61029000 2067500 2138400 0 1122400 806990 1023900 5125000 6267100 5748300 4196600 3280100 2110700 3399600 2761300 3023000 0 0 0 6910700 4649700 3476000 2036900 0 884930 2317 324 2237 45367;45368;45369;45370;45371;45372;45373;45374;45375;45376;45377;45378;45379;45380;45381;45382;45383;45384;45385 27916;27917 27917 2 AVGAYSAK Unmodified 765.4021 0.40210366 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 11.163 11.862 2 0.0093275 3030 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.229 41.858 659420000 215550000 222530000 221340000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2318 1762 2238 45386;45387;45388 27918;27919;27920 27918 1 AVGDGVAVKPTDK Unmodified 1255.6772 0.67721588 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 2 2 1 1 1 2 2 3 1 1 1 2 2 2 1 1 1 20.657 20.789 2;3 2.4379E-07 3879 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 154.66 144.13 782250000 44565000 47281000 45909000 10603000 6149500 5934000 57970000 60227000 70260000 32002000 24756000 17846000 47403000 44401000 63889000 3706900 3800400 4223600 54046000 54787000 50113000 10883000 11727000 9770100 2319 210 2239 45389;45390;45391;45392;45393;45394;45395;45396;45397;45398;45399;45400;45401;45402;45403;45404;45405;45406;45407;45408;45409;45410;45411;45412;45413;45414;45415;45416;45417;45418;45419;45420;45421;45422;45423 27921;27922;27923;27924;27925;27926;27927;27928;27929;27930;27931;27932 27924 12 AVGDGVAVKPTDKIVVSPAAGTIVK Unmodified 2391.3737 0.37371065 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 31.003 29.07 4 0.15749 9927 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 18.497 18.497 18755000 0 0 0 2363900 2706600 4336300 0 0 0 1522600 1951200 1887900 0 0 0 0 0 0 0 0 0 1668000 0 2318400 2320 210 2240 45424;45425;45426;45427;45428;45429;45430;45431 27933 27933 1 AVGDSLEAQQYGIAFPK Unmodified 1792.8996 0.89956426 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.429 40.73 2;3 7.9007E-25 19958 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 222.2 215.76 4608200000 907180000 825180000 844840000 0 0 0 138380000 128620000 143080000 0 0 0 340270000 342800000 313390000 0 0 0 203370000 219310000 201840000 0 0 0 2321 877 2241 45432;45433;45434;45435;45436;45437;45438;45439;45440;45441;45442;45443;45444;45445;45446;45447;45448;45449;45450;45451;45452;45453;45454;45455 27934;27935;27936;27937;27938;27939;27940;27941;27942;27943;27944;27945;27946;27947;27948;27949;27950;27951 27940 18 AVGEELCPALGLTIPVGK Unmodified 1822.9863 0.98627078 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 2 2 50.556 49.177 2;3 1.1375E-09 24048 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 159.66 156.01 581350000 141740000 134570000 116270000 0 0 0 10388000 13667000 14377000 0 0 0 21775000 20418000 20308000 0 0 0 28715000 31737000 27386000 0 0 0 2322 1107 2242 45456;45457;45458;45459;45460;45461;45462;45463;45464;45465;45466;45467;45468;45469;45470;45471;45472;45473;45474;45475 27952;27953;27954;27955;27956;27957;27958;27959;27960;27961;27962;27963 27958 12 AVGHEVNK Unmodified 852.44537 0.44536545 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.7689 7.4371 2 0.00084756 1501 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.62 90.814 369950000 23702000 28916000 18502000 6583600 4397600 5797300 22909000 25757000 23880000 31120000 26228000 24023000 15995000 16462000 15110000 0 0 2114700 21371000 1248500 16789000 11428000 13356000 14257000 2323 1009 2243 45476;45477;45478;45479;45480;45481;45482;45483;45484;45485;45486;45487;45488;45489;45490;45491;45492;45493;45494;45495;45496;45497 27964;27965;27966;27967;27968;27969;27970;27971;27972;27973;27974 27971 9 AVGLPEIQVIR Unmodified 1193.7132 0.71320746 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.485 39.812 2 3.1235E-07 18691 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 157.91 154.65 355350000 25859000 22612000 22567000 0 0 0 31463000 30294000 34006000 0 0 0 24772000 22785000 22632000 0 0 0 40767000 41900000 35690000 0 0 0 2324 1900 2244 45498;45499;45500;45501;45502;45503;45504;45505;45506;45507;45508;45509 27975;27976;27977;27978;27979 27979 5 AVGLPGDK Unmodified 755.41775 0.41775372 39 P00803 lepB Signal peptidase I yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 13.111 13.807 2 0.026418 4443 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 64.757 50.696 1084000000 99456000 74240000 96376000 0 0 0 97693000 95223000 99646000 2116200 2238200 1702500 84172000 74860000 66036000 0 0 0 98961000 92924000 96456000 1905500 0 0 2325 39 2245 45510;45511;45512;45513;45514;45515;45516;45517;45518;45519;45520;45521;45522;45523;45524;45525;45526;45527;45528;45529;45530;45531;45532;45533;45534 27980;27981;27982;27983;27984;27985 27980 5 AVGLPGDKVTYDPVSK Unmodified 1644.8723 0.87228688 39 P00803 lepB Signal peptidase I yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 27.287 25.631 3 0.0041668 9211 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 56.514 49.785 46452000 0 0 0 3213800 0 0 0 0 0 9063300 6880700 9290300 0 0 0 0 0 0 0 0 0 5159700 6980300 5864200 2326 39 2246 45535;45536;45537;45538;45539;45540;45541 27986;27987;27988;27989;27990;27991 27989 4 AVGNLELANDEVR Unmodified 1398.7103 0.71030693 974 P0AFZ3 sspB Stringent starvation protein B yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.234 26.906 2 1.0247E-09 12334 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 209.1 203.31 863320000 70333000 57742000 58142000 2493600 2021100 2400600 53256000 52863000 63432000 5139500 6756500 7029800 76162000 69403000 71292000 2395200 0 0 83667000 92887000 74688000 3342800 3483100 4390800 2327 974 2247 45542;45543;45544;45545;45546;45547;45548;45549;45550;45551;45552;45553;45554;45555;45556;45557;45558;45559;45560;45561;45562;45563 27992;27993;27994;27995 27995 3 AVGPYVVTK Unmodified 932.53312 0.53311783 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.037 19.46 2 0.0018627 7495 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.181 50.996 8002100000 1146400000 1091700000 829500000 4063200 3853900 2733500 699080000 653120000 571990000 0 2399800 1639600 499890000 479440000 432770000 0 0 0 546710000 531600000 501760000 1043400 1029300 1346400 2328 489 2248 45564;45565;45566;45567;45568;45569;45570;45571;45572;45573;45574;45575;45576;45577;45578;45579;45580;45581;45582;45583 27996;27997;27998;27999;28000;28001;28002;28003;28004;28005 27997 9 AVGVEWLEGDSTIPTR Unmodified 1728.8683 0.86826413 1140 P17444 betA Oxygen-dependent choline dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 44.71 43.077 2 4.09E-06 15328 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 91.961 85.989 86260000 0 3449100 0 0 2399300 2594700 25516000 21200000 23184000 0 0 0 0 3881100 4036600 0 0 0 0 0 0 0 0 0 2329 1140 2249 45584;45585;45586;45587;45588;45589;45590;45591 28006 28006 1 AVGVHQSAYK Unmodified 1058.5509 0.55089316 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 1 1 1 2 2 2 2 1 1 1 10.819 11.553 2;3 4.1708E-05 2787 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.74 122.78 1785900000 124370000 115500000 113040000 61781000 72507000 62649000 344890000 338160000 314390000 4451700 10319000 4777400 8246200 10788000 23843000 0 0 0 37957000 37128000 35612000 16729000 14383000 34365000 2330 1191 2250 45592;45593;45594;45595;45596;45597;45598;45599;45600;45601;45602;45603;45604;45605;45606;45607;45608;45609;45610;45611;45612;45613;45614;45615;45616;45617;45618;45619;45620;45621;45622;45623;45624;45625;45626 28007;28008;28009;28010;28011;28012;28013 28008 7 AVGVLHLPLGDENRR Unmodified 1644.906 0.90598704 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 27.685 26.02 4 0.16498 12188 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 11.262 6.4604 19788000 0 0 0 0 0 0 2738300 4492700 0 1737100 2741600 1780000 0 0 0 0 0 0 0 3839400 2459100 0 0 0 2331 1877 2251 45627;45628;45629;45630;45631;45632;45633 28014 28014 0 AVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMK Unmodified 3486.797 0.79696045 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.956 53.483 3;4 1.2155E-44 26457 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 220.78 215.93 3468800000 371400000 321630000 374920000 0 0 0 280640000 257980000 239110000 0 0 0 278690000 250800000 229460000 0 0 0 282150000 313000000 269020000 0 0 0 2332 382 2252 45634;45635;45636;45637;45638;45639;45640;45641;45642;45643;45644;45645;45646;45647;45648;45649;45650;45651;45652;45653;45654;45655;45656;45657 28015;28016;28017;28018;28019;28020;28021;28022;28023;28024;28025;28026;28027;28028;28029;28030;28031;28032 28025 18 AVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMR Unmodified 3921.9207 0.92071699 769 P0AD57 ispB Octaprenyl-diphosphate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 55.121 53.667 5 1.8121E-07 25609 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 75.248 73.693 395580000 28877000 42308000 39073000 0 0 0 0 46020000 0 0 0 0 35415000 37887000 0 0 0 0 57824000 53071000 55100000 0 0 0 2333 769 2253 45658;45659;45660;45661;45662;45663;45664;45665;45666 28033;28034;28035 28035 1 AVHDNLR Unmodified 823.43005 0.43004974 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 2 1 1 1 1 1 1 1 9.2681 10.024 2 0.003555 2490 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.49 69.541 150630000 39892000 41312000 28709000 0 0 0 12131000 2857700 3015900 0 0 0 1842300 2505200 0 0 0 0 7061900 0 7653100 0 0 3652700 2334 1278 2254 45667;45668;45669;45670;45671;45672;45673;45674;45675;45676;45677;45678 28036;28037;28038;28039 28039 4 AVHIMGLLSAGGVHSHEDHIMAMVELAAER Unmodified 3180.5631 0.56307788 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 1 1 1 1 1 45.472 43.973 4;5 7.676E-09 20398 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 109.97 109.28 420550000 23050000 21421000 15941000 0 0 0 68785000 54336000 62196000 0 0 0 37688000 35627000 21777000 0 0 0 27603000 27698000 24430000 0 0 0 2335 1487 2255 45679;45680;45681;45682;45683;45684;45685;45686;45687;45688;45689;45690;45691;45692 28040;28041;28042;28043;28044;28045;28046;28047;28048;28049 28049 10 AVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQR Unmodified 3861.8971 0.8970852 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 54.833 53.394 4 3.7231E-18 25450 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 132.34 127.16 1405300000 95176000 97307000 97909000 2936100 1927200 0 123310000 105750000 104520000 0 0 0 109700000 102290000 114170000 0 0 0 156310000 167820000 126200000 0 0 0 2336 170 2256 45693;45694;45695;45696;45697;45698;45699;45700;45701;45702;45703;45704;45705;45706;45707 28050;28051;28052;28053;28054;28055;28056;28057;28058 28056 9 AVHVSPGALDAEAYGVK Unmodified 1682.8628 0.86278482 41 P00811 ampC Beta-lactamase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 27.692 26.523 3 0.0017965 12125 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 61.265 57.424 101460000 0 0 0 0 0 0 0 12858000 14399000 0 0 0 10018000 8130700 8255600 0 0 0 19100000 16064000 12632000 0 0 0 2337 41 2257 45708;45709;45710;45711;45712;45713;45714;45715 28059;28060 28060 2 AVHYLCDESSDWFPDLDDIR Unmodified 2452.0641 0.064139759 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.927 49.714 3 0.00054816 24601 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.705 63.466 390700000 26323000 35394000 30588000 1897100 1701600 1784500 23471000 19879000 25605000 0 0 0 39647000 37688000 0 0 3957100 0 40126000 47606000 40516000 4011000 5336800 5169100 2338 491 2258 45716;45717;45718;45719;45720;45721;45722;45723;45724;45725;45726;45727;45728;45729;45730;45731;45732;45733 28061;28062;28063;28064;28065;28066;28067;28068 28061 2 AVIAIHGGAGAISR Unmodified 1291.7361 0.73606817 1473 P37595 iaaA Isoaspartyl peptidase;Isoaspartyl peptidase subunit alpha;Isoaspartyl peptidase subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.016 19.536 2 6.8939E-06 7751 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.38 105.97 45323000 6214400 5685500 3453300 0 0 0 5962000 5916900 6465300 0 0 0 3494800 0 2792200 0 0 0 5338700 0 0 0 0 0 2339 1473 2259 45734;45735;45736;45737;45738;45739;45740;45741;45742;45743;45744;45745 28069;28070;28071;28072;28073;28074;28075;28076 28069 8 AVIENYAQYAGVKPEQVLVSR Unmodified 2333.2379 0.23794545 138 P06986 hisC Histidinol-phosphate aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.856 37.183 3 1.0014E-15 18483 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 152.32 146.16 481660000 74584000 67826000 61429000 0 0 0 38418000 37544000 30573000 0 0 0 29343000 26685000 30337000 0 0 0 28047000 26432000 30446000 0 0 0 2340 138 2260 45746;45747;45748;45749;45750;45751;45752;45753;45754;45755;45756;45757 28077;28078;28079;28080;28081;28082;28083;28084;28085;28086;28087;28088 28077 12 AVIESENSAER Unmodified 1203.5731 0.57314474 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 12.535 12.863 2 0.033502 2947 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 52.79 39.523 1569800000 527370000 484050000 528640000 0 0 0 0 0 0 0 7855600 0 0 0 0 6506500 5091800 5429200 0 0 0 0 0 4848400 2341 990 2261 45758;45759;45760;45761;45762;45763;45764;45765 28089 28089 1 AVIESENSAERDQLLENLQEGMEVK Unmodified 2830.3655 0.36546674 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 2 2 3 3 2 3 3 2 1 3 3 3 3 2 2 3 3 4 2 2 2 43.328 41.846 2;3;4 5.4067E-63 20287 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 271.31 266.92 2406100000 270380000 217990000 207220000 28996000 25290000 28962000 81370000 91373000 93758000 67842000 57270000 56490000 119350000 126730000 105450000 78774000 84367000 66812000 151600000 162800000 162820000 37530000 45812000 37127000 2342 990 2262 45766;45767;45768;45769;45770;45771;45772;45773;45774;45775;45776;45777;45778;45779;45780;45781;45782;45783;45784;45785;45786;45787;45788;45789;45790;45791;45792;45793;45794;45795;45796;45797;45798;45799;45800;45801;45802;45803;45804;45805;45806;45807;45808;45809;45810;45811;45812;45813;45814;45815;45816;45817;45818;45819;45820;45821;45822;45823;45824;45825;45826;45827;45828 28090;28091;28092;28093;28094;28095;28096;28097;28098;28099;28100;28101;28102;28103;28104;28105;28106;28107;28108;28109;28110;28111;28112;28113;28114;28115;28116;28117 28114 28 AVILVAAWLGDAR Unmodified 1353.7769 0.77687035 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.006 52.566 2 1.9254E-06 26025 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 161.17 157.92 199480000 18225000 19286000 15943000 0 0 0 18432000 22835000 20279000 0 0 0 11769000 13517000 13957000 0 0 0 15520000 15635000 14079000 0 0 0 2343 1375 2263 45829;45830;45831;45832;45833;45834;45835;45836;45837;45838;45839;45840 28118;28119;28120;28121;28122;28123;28124;28125;28126;28127;28128;28129 28120 12 AVINPGVTIGDNVVVASGAVVTK Unmodified 2179.2212 0.22123275 1943 P77791 maa Maltose O-acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.297 44.807 2 3.2561E-15 21737 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.44 146.46 68669000 4470400 4222800 3755400 0 0 0 7231500 6615700 5944500 0 0 0 3136200 3821800 3016400 0 0 0 8285000 9801500 8368200 0 0 0 2344 1943 2264 45841;45842;45843;45844;45845;45846;45847;45848;45849;45850;45851;45852 28130;28131;28132 28132 3 AVIPVAGLGMHMLPATK Unmodified 1704.9419 0.94190354 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 42.39 40.577 2;3 2.8579E-14 19786 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 212.9 204.49 2777200000 188460000 183650000 161810000 7765600 7570700 7472200 216930000 217960000 208920000 10306000 9547600 9989600 235790000 222840000 203360000 0 0 0 250450000 295080000 315430000 8629800 8555000 6659400 2345 583 2265 45853;45854;45855;45856;45857;45858;45859;45860;45861;45862;45863;45864;45865;45866;45867;45868;45869;45870;45871;45872;45873;45874;45875;45876;45877;45878;45879;45880;45881;45882;45883;45884;45885;45886 28133;28134;28135;28136;28137;28138;28139;28140;28141;28142;28143;28144;28145;28146;28147;28148;28149;28150;28151;28152;28153;28154 28140 21 AVIPVAGLGTR Unmodified 1052.6342 0.63422886 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.451 30.874 2 1.6305E-05 13818 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 140.35 110.28 5249900000 411060000 359710000 337830000 2430100 2331100 0 542750000 536510000 526300000 7419300 6626000 5151000 413690000 379160000 407570000 0 0 0 423640000 487680000 391120000 3170900 2271900 3441800 2346 876 2266 45887;45888;45889;45890;45891;45892;45893;45894;45895;45896;45897;45898;45899;45900;45901;45902;45903;45904;45905;45906 28155;28156;28157;28158;28159;28160;28161;28162;28163;28164;28165;28166;28167;28168 28168 14 AVITATQMMESMITNPMPTR Unmodified 2222.0568 0.056751657 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 53.904 52.469 2;3 6.7754E-68 24640 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 372.66 365.29 3644000000 211950000 204020000 203670000 2669400 4266900 5319700 313420000 309620000 288920000 51468000 20805000 21621000 392760000 425860000 366060000 0 0 0 271420000 273070000 231720000 19948000 20565000 4897900 2347 1184 2267 45907;45908;45909;45910;45911;45912;45913;45914;45915;45916;45917;45918;45919;45920;45921;45922;45923;45924;45925;45926;45927;45928;45929;45930;45931;45932;45933;45934;45935;45936;45937;45938;45939;45940;45941;45942 28169;28170;28171;28172;28173;28174;28175;28176;28177;28178;28179;28180;28181;28182;28183;28184;28185;28186;28187;28188;28189;28190;28191;28192 28190 24 AVITGDVTQIDLPR Unmodified 1496.8199 0.81985738 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 39.757 38.041 2;3 9.4824E-15 17672 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 241.4 233.75 854850000 110060000 92419000 90215000 4404100 4197600 4363700 84547000 78535000 82442000 0 0 0 39612000 34061000 36089000 0 0 0 57472000 61183000 59315000 5372300 5268900 5286400 2348 530 2268 45943;45944;45945;45946;45947;45948;45949;45950;45951;45952;45953;45954;45955;45956;45957;45958;45959;45960;45961;45962;45963;45964;45965;45966;45967;45968;45969;45970;45971;45972 28193;28194;28195;28196;28197;28198;28199;28200;28201;28202;28203;28204;28205;28206;28207;28208;28209;28210;28211;28212;28213;28214 28214 22 AVITGLGIVSSIGNNQQEVLASLR Unmodified 2438.3493 0.34928681 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 3 3 3 1 3 3 2 54.162 52.763 2;3;4 1.556E-72 24819 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 368.47 361.75 8652200000 1227800000 1178800000 1098300000 0 0 4876800 548010000 508680000 532500000 0 0 0 639560000 613730000 541160000 1532800 0 0 578100000 569950000 609320000 0 0 0 2349 489 2269 45973;45974;45975;45976;45977;45978;45979;45980;45981;45982;45983;45984;45985;45986;45987;45988;45989;45990;45991;45992;45993;45994;45995;45996;45997;45998;45999;46000;46001;46002;46003;46004;46005;46006;46007;46008;46009 28215;28216;28217;28218;28219;28220;28221;28222;28223;28224;28225;28226;28227;28228;28229;28230;28231;28232;28233;28234;28235;28236;28237;28238;28239;28240 28240 26 AVIVIMGDDPKEDLAVLAK Unmodified 1996.0915 0.091464129 851 P0AEE1 dcrB Protein DcrB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 47.261 45.837 2;3 5.5779E-17 22715 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 168.31 147.45 1405300000 50006000 41557000 33551000 13530000 14878000 13201000 94269000 99696000 94231000 78375000 75421000 69897000 80126000 81987000 78989000 16004000 14453000 19593000 121830000 119330000 107420000 28809000 30982000 27122000 2350 851 2270 46010;46011;46012;46013;46014;46015;46016;46017;46018;46019;46020;46021;46022;46023;46024;46025;46026;46027;46028;46029;46030;46031;46032;46033;46034;46035;46036;46037;46038;46039;46040;46041;46042;46043;46044;46045;46046;46047;46048;46049;46050;46051;46052;46053;46054 28241;28242;28243;28244;28245;28246;28247;28248;28249;28250;28251;28252;28253;28254;28255;28256;28257;28258;28259;28260;28261;28262;28263;28264;28265;28266;28267;28268;28269;28270;28271;28272;28273;28274;28275;28276;28277;28278 28253 38 AVIYSNKPLPELAK Unmodified 1541.8817 0.88172935 110 P05458 ptrA Protease 3 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.249 25.129 3 0.003636 11446 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 51.009 46.618 145110000 12819000 15799000 14289000 0 0 0 11977000 11222000 12061000 0 0 0 8771900 11734000 9979700 0 0 0 11864000 13975000 10615000 0 0 0 2351 110 2271 46055;46056;46057;46058;46059;46060;46061;46062;46063;46064;46065;46066 28279;28280;28281;28282;28283 28279 5 AVKPIALR Unmodified 866.57017 0.57017204 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 13.66 14.383 2 0.0041747 4532 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.67 76.698 202030000 0 0 0 0 0 0 43574000 47542000 40634000 2043600 1991300 0 16502000 20205000 13685000 0 0 0 3977700 6274200 5602200 0 0 0 2352 1276 2272 46067;46068;46069;46070;46071;46072;46073;46074;46075;46076;46077 28284;28285;28286;28287;28288;28289 28284 6 AVLADSNDISLR Unmodified 1272.6674 0.66737948 1921 P77611 rsxC Electron transport complex subunit RsxC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 29.184 27.947 2 0.00041461 13015 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 85.355 65.568 37180000 0 0 3021300 0 0 0 0 0 0 0 0 0 0 5490700 5861400 0 0 0 6851700 6071600 7661900 2220800 0 0 2353 1921 2273 46078;46079;46080;46081;46082;46083;46084 28290;28291;28292 28290 3 AVLAETEQK Unmodified 987.52368 0.52367535 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 12.553 13.252 2 1.0443E-05 3860 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.34 92.179 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2354 1173 2274 46085;46086;46087 28293;28294;28295 28294 3 AVLDELNK Unmodified 900.49165 0.49164694 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 2 1 1 1 1 1 2 2 2 1 2 1 1 1 22.107 21.732 2 0.085571 7476 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 58.819 19.156 535700000 25429000 29777000 5531600 0 0 0 53444000 54029000 38974000 9047600 7725200 8861800 39065000 37390000 41472000 0 0 0 53900000 58327000 59104000 4579200 3918100 5127300 2355 819 2275 46088;46089;46090;46091;46092;46093;46094;46095;46096;46097;46098;46099;46100;46101;46102;46103;46104;46105;46106;46107;46108;46109;46110;46111 28296;28297;28298 28296 0 AVLDELNKGGDFAALAK Unmodified 1730.9203 0.9202997 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 39.271 37.483 2;3 4.7656E-07 14551 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 83.106 72.638 157610000 0 0 0 8802200 11466000 8227100 0 0 0 21070000 17563000 24105000 0 0 0 8561600 5393000 5563100 0 0 0 12132000 17774000 16951000 2356 819 2276 46112;46113;46114;46115;46116;46117;46118;46119;46120;46121;46122;46123;46124;46125;46126;46127;46128;46129;46130;46131;46132 28299;28300;28301;28302;28303;28304;28305;28306;28307;28308;28309;28310;28311;28312 28308 14 AVLDHFFSDFTQQLDK Unmodified 1909.921 0.92102798 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 1 1 52.183 51.079 2;3 1.5347E-18 23829 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 231.06 214.93 1852100000 126530000 115130000 115680000 0 0 0 137290000 129690000 134460000 7001700 0 0 115230000 158990000 182350000 10776000 13759000 20417000 192680000 205980000 161420000 7875500 9596200 7276200 2357 124 2277 46133;46134;46135;46136;46137;46138;46139;46140;46141;46142;46143;46144;46145;46146;46147;46148;46149;46150;46151;46152;46153;46154;46155;46156;46157;46158 28313;28314;28315;28316;28317;28318;28319;28320;28321;28322;28323;28324;28325;28326;28327;28328;28329;28330;28331;28332 28332 20 AVLDISVER Unmodified 1000.5553 0.55530983 1135 P17115 gutQ Arabinose 5-phosphate isomerase GutQ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 30.149 28.848 2 0.0064572 12863 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 70.856 39.782 156680000 0 0 0 0 0 0 0 0 22822000 0 0 0 20210000 21609000 19711000 0 0 0 23167000 24224000 24935000 0 0 0 2358 1135 2278 46159;46160;46161;46162;46163;46164;46165 28333 28333 1 AVLDTCR Unmodified 833.40654 0.40653711 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.747 13.598 2 0.00026773 4022 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 160.69 98.695 1968300000 207140000 203560000 216460000 6099500 7195700 5579500 158680000 149590000 152400000 0 0 0 131000000 117610000 110020000 0 0 0 167290000 154650000 174790000 6210600 0 0 2359 228 2279 46166;46167;46168;46169;46170;46171;46172;46173;46174;46175;46176;46177;46178;46179;46180;46181 28334;28335;28336;28337;28338;28339;28340;28341;28342;28343;28344 28339 10 AVLEMPR Unmodified 814.43711 0.43710895 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.472 22.751 2 0.0021324 9270 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 117.7 117.7 397390000 33337000 32197000 31437000 0 0 0 40574000 38700000 37009000 0 0 0 32780000 31077000 21793000 0 0 0 26819000 36754000 34917000 0 0 0 2360 1224 2280 46182;46183;46184;46185;46186;46187;46188;46189;46190;46191;46192;46193 28345;28346;28347;28348;28349;28350;28351;28352;28353;28354;28355;28356 28356 8 AVLEVAGVHNVLAK Unmodified 1418.8245 0.82454882 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 29.621 28.31 2;3 1.5966E-09 9528 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 191.53 171.22 13438000000 1697500000 1488300000 1407200000 107810000 94492000 90145000 629660000 570090000 619220000 192680000 177850000 231670000 736360000 723710000 668220000 165260000 99832000 117020000 1186900000 1023900000 1066000000 118000000 112990000 112850000 2361 376 2281 46194;46195;46196;46197;46198;46199;46200;46201;46202;46203;46204;46205;46206;46207;46208;46209;46210;46211;46212;46213;46214;46215;46216;46217;46218;46219;46220;46221;46222;46223;46224;46225;46226;46227;46228;46229;46230;46231;46232;46233;46234;46235;46236;46237;46238;46239;46240;46241 28357;28358;28359;28360;28361;28362;28363;28364;28365;28366;28367;28368;28369;28370;28371;28372;28373;28374;28375;28376;28377;28378;28379;28380;28381;28382;28383;28384;28385;28386;28387;28388;28389;28390;28391;28392;28393;28394;28395;28396;28397;28398;28399;28400;28401;28402;28403;28404 28358 48 AVLFLYLNR Unmodified 1107.6441 0.64406526 853 P0AEE8 dam DNA adenine methylase yes yes 0 0 0 By MS/MS 1 44.779 44.933 2 0.01963 16067 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 76.035 73.028 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2362 853 2282 46242 28405 28405 1 AVLGENAPVDSWDLILKPENLEK Unmodified 2549.3377 0.33771907 1363 P31133 potF Putrescine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.603 50.368 3 4.5677E-07 24442 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.56 107.53 124100000 32738000 36766000 32981000 0 0 0 5046500 0 0 0 0 0 0 3382300 0 0 0 0 3275600 3778500 6132900 0 0 0 2363 1363 2283 46243;46244;46245;46246;46247;46248;46249;46250 28406;28407;28408 28408 3 AVLGNAANEEIMQLAHLECAK Unmodified 2281.1195 0.11948657 1544 P39830 ybaL Inner membrane protein YbaL yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.402 44.705 3 4.797E-07 18299 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 102.33 97.888 285980000 0 0 0 3237000 4484900 3132800 32683000 23426000 32001000 5826100 8019400 6049300 24447000 24987000 24141000 0 0 0 29944000 25816000 28120000 4149400 5510800 0 2364 1544 2284 46251;46252;46253;46254;46255;46256;46257;46258;46259;46260;46261;46262;46263;46264;46265;46266;46267 28409;28410;28411 28409 3 AVLHVALR Unmodified 877.54977 0.54977095 277;19 P0A6T1;CON__Q3ZBD7 pgi Glucose-6-phosphate isomerase no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.011 18.521 2 1.734E-05 7038 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 177.54 124.02 2368300000 163420000 231230000 180230000 427360 0 0 297860000 269730000 287530000 0 1449800 1397400 141470000 145300000 156200000 0 0 0 174440000 179400000 138240000 0 0 0 + 2365 277;19 2285 46268;46269;46270;46271;46272;46273;46274;46275;46276;46277;46278;46279;46280;46281;46282 28412;28413;28414;28415;28416;28417;28418;28419;28420;28421;28422;28423;28424 28413 13 AVLLDEK Unmodified 786.44872 0.4487195 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 1 1 1 1 1 17.386 17.965 2 0.0023307 6721 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.19 8.9852 2045500000 216090000 229150000 0 0 490310 0 243130000 257130000 234050000 595200 733890 0 141200000 147860000 124310000 0 0 0 153510000 148130000 149090000 0 0 0 2366 94 2286 46283;46284;46285;46286;46287;46288;46289;46290;46291;46292;46293;46294;46295;46296;46297;46298 28425;28426;28427;28428;28429;28430;28431;28432;28433;28434;28435 28425 11 AVLLGGDILDTQPLPVELAETLGK Unmodified 2461.368 0.36795657 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.679 54.275 3 0.023394 20040 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 44.312 41.388 49399000 7895100 7963200 6059800 4997800 4975600 5122600 0 0 0 0 0 0 0 3056200 0 0 0 0 3639900 1864800 3824000 0 0 0 2367 1937 2287 46299;46300;46301;46302;46303;46304;46305;46306;46307;46308 28436 28436 0 AVLLPGDLSDEK Unmodified 1255.666 0.66598249 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.498 33.05 2 1.5464E-05 15698 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.97 123.13 897340000 199120000 199590000 168090000 0 0 0 87228000 83732000 94263000 0 0 0 6791800 7974800 8028500 0 0 0 14196000 12083000 16251000 0 0 0 2368 995 2288 46309;46310;46311;46312;46313;46314;46315;46316;46317;46318;46319;46320 28437;28438;28439;28440;28441;28442;28443 28442 7 AVLLSFR Unmodified 804.48577 0.48577371 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.49 32.024 2 0.00026773 15471 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 160.69 108.46 2094300000 203550000 204310000 230970000 0 1422000 1395900 172040000 166350000 166610000 0 0 0 128760000 134020000 133330000 0 0 0 182570000 192770000 176250000 0 0 0 2369 512 2289 46321;46322;46323;46324;46325;46326;46327;46328;46329;46330;46331;46332;46333;46334 28444;28445;28446;28447;28448;28449;28450;28451;28452;28453;28454;28455 28446 12 AVLPEMIAR Unmodified 998.55829 0.55828672 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.907 31.388 2 3.4597E-06 14922 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.75 136.96 774480000 59622000 57292000 51667000 973520 720010 640260 63950000 71585000 66170000 0 0 0 73568000 64980000 63311000 0 0 0 69575000 60302000 63800000 0 3269300 3059000 2370 1471 2290 46335;46336;46337;46338;46339;46340;46341;46342;46343;46344;46345;46346;46347;46348;46349;46350;46351 28456;28457;28458;28459;28460;28461;28462;28463;28464;28465;28466;28467 28463 12 AVLPGMVER Unmodified 970.52699 0.52698659 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.67 25.531 2 0.0010642 11974 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.114 52.812 4391100000 403650000 414640000 351340000 0 0 0 496220000 489860000 489410000 0 0 0 274610000 255790000 284330000 0 0 0 322350000 306540000 302350000 0 0 0 2371 1545 2291 46352;46353;46354;46355;46356;46357;46358;46359;46360;46361;46362;46363 28468;28469;28470;28471;28472;28473;28474;28475;28476;28477;28478 28468 8 AVLVAGGVEAEK Unmodified 1141.6343 0.63428844 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 2 1 1 2 4 11 14 13 4 2 3 12 16 19 4 5 5 13 21 14 27.712 26.81 2;3 9.3501E-07 7352 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 114.4 91.359 14896000000 197850000 173680000 146900000 10363000 10418000 10140000 93964000 93012000 126100000 864230000 1049100000 1028200000 170610000 141090000 167760000 2440800000 1943800000 1949400000 175870000 165950000 150990000 1356900000 1243000000 1185700000 2372 463 2292 46364;46365;46366;46367;46368;46369;46370;46371;46372;46373;46374;46375;46376;46377;46378;46379;46380;46381;46382;46383;46384;46385;46386;46387;46388;46389;46390;46391;46392;46393;46394;46395;46396;46397;46398;46399;46400;46401;46402;46403;46404;46405;46406;46407;46408;46409;46410;46411;46412;46413;46414;46415;46416;46417;46418;46419;46420;46421;46422;46423;46424;46425;46426;46427;46428;46429;46430;46431;46432;46433;46434;46435;46436;46437;46438;46439;46440;46441;46442;46443;46444;46445;46446;46447;46448;46449;46450;46451;46452;46453;46454;46455;46456;46457;46458;46459;46460;46461;46462;46463;46464;46465;46466;46467;46468;46469;46470;46471;46472;46473;46474;46475;46476;46477;46478;46479;46480;46481;46482;46483;46484;46485;46486;46487;46488;46489;46490;46491;46492;46493;46494;46495;46496;46497;46498;46499;46500;46501;46502;46503;46504;46505;46506;46507;46508;46509;46510;46511;46512;46513;46514;46515;46516;46517;46518;46519;46520;46521;46522;46523;46524;46525;46526;46527;46528;46529;46530;46531;46532;46533;46534;46535;46536;46537;46538;46539;46540 28479;28480;28481;28482;28483;28484;28485;28486;28487;28488;28489;28490;28491;28492;28493;28494;28495;28496;28497;28498;28499;28500;28501;28502;28503;28504;28505;28506;28507;28508;28509;28510;28511;28512;28513;28514;28515;28516;28517;28518;28519;28520;28521;28522;28523;28524;28525;28526;28527;28528;28529;28530;28531;28532;28533;28534;28535;28536;28537;28538;28539;28540;28541;28542;28543;28544;28545;28546;28547;28548;28549;28550;28551;28552;28553;28554;28555;28556;28557;28558;28559;28560;28561;28562;28563;28564;28565;28566;28567;28568;28569;28570;28571;28572;28573;28574;28575;28576;28577;28578;28579;28580;28581;28582;28583;28584;28585;28586;28587;28588;28589;28590;28591;28592;28593;28594;28595;28596;28597;28598;28599;28600;28601;28602;28603;28604;28605;28606;28607;28608;28609;28610;28611;28612;28613;28614;28615;28616;28617;28618;28619;28620;28621;28622;28623;28624;28625;28626;28627;28628;28629;28630;28631;28632;28633;28634;28635;28636;28637;28638;28639;28640;28641;28642;28643;28644;28645;28646;28647;28648;28649;28650;28651;28652;28653;28654;28655;28656;28657;28658;28659;28660;28661;28662;28663;28664;28665;28666;28667 28536 170 AVLVAGGVEAEKLDK Unmodified 1497.8403 0.84025847 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 2 2 2 3 2 28 26 28 2 2 3 36 41 35 2 2 2 28 31 28 32.512 31.373 2;3;4 2.5333E-08 6835 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 177.57 171.59 32070000000 137160000 149800000 109140000 26463000 22247000 25533000 81092000 18090000 76983000 2598500000 2243600000 2370400000 82005000 71256000 70362000 5525400000 4836700000 4650800000 124700000 115690000 120980000 3086600000 2858900000 2667800000 2373 463 2293 46541;46542;46543;46544;46545;46546;46547;46548;46549;46550;46551;46552;46553;46554;46555;46556;46557;46558;46559;46560;46561;46562;46563;46564;46565;46566;46567;46568;46569;46570;46571;46572;46573;46574;46575;46576;46577;46578;46579;46580;46581;46582;46583;46584;46585;46586;46587;46588;46589;46590;46591;46592;46593;46594;46595;46596;46597;46598;46599;46600;46601;46602;46603;46604;46605;46606;46607;46608;46609;46610;46611;46612;46613;46614;46615;46616;46617;46618;46619;46620;46621;46622;46623;46624;46625;46626;46627;46628;46629;46630;46631;46632;46633;46634;46635;46636;46637;46638;46639;46640;46641;46642;46643;46644;46645;46646;46647;46648;46649;46650;46651;46652;46653;46654;46655;46656;46657;46658;46659;46660;46661;46662;46663;46664;46665;46666;46667;46668;46669;46670;46671;46672;46673;46674;46675;46676;46677;46678;46679;46680;46681;46682;46683;46684;46685;46686;46687;46688;46689;46690;46691;46692;46693;46694;46695;46696;46697;46698;46699;46700;46701;46702;46703;46704;46705;46706;46707;46708;46709;46710;46711;46712;46713;46714;46715;46716;46717;46718;46719;46720;46721;46722;46723;46724;46725;46726;46727;46728;46729;46730;46731;46732;46733;46734;46735;46736;46737;46738;46739;46740;46741;46742;46743;46744;46745;46746;46747;46748;46749;46750;46751;46752;46753;46754;46755;46756;46757;46758;46759;46760;46761;46762;46763;46764;46765;46766;46767;46768;46769;46770;46771;46772;46773;46774;46775;46776;46777;46778;46779;46780;46781;46782;46783;46784;46785;46786;46787;46788;46789;46790;46791;46792;46793;46794;46795;46796;46797;46798;46799;46800;46801;46802;46803;46804;46805;46806;46807;46808;46809;46810;46811;46812;46813;46814;46815;46816;46817;46818;46819;46820;46821;46822;46823;46824;46825;46826;46827;46828;46829;46830;46831;46832;46833;46834;46835;46836;46837;46838;46839;46840;46841;46842;46843;46844;46845;46846;46847;46848;46849;46850;46851;46852;46853;46854;46855;46856 28668;28669;28670;28671;28672;28673;28674;28675;28676;28677;28678;28679;28680;28681;28682;28683;28684;28685;28686;28687;28688;28689;28690;28691;28692;28693;28694;28695;28696;28697;28698;28699;28700;28701;28702;28703;28704;28705;28706;28707;28708;28709;28710;28711;28712;28713;28714;28715;28716;28717;28718;28719;28720;28721;28722;28723;28724;28725;28726;28727;28728;28729;28730;28731;28732;28733;28734;28735;28736;28737;28738;28739;28740;28741;28742;28743;28744;28745;28746;28747;28748;28749;28750;28751;28752;28753;28754;28755;28756;28757;28758;28759;28760;28761;28762;28763;28764;28765;28766;28767;28768;28769;28770;28771;28772;28773;28774;28775;28776;28777;28778;28779;28780;28781;28782;28783;28784;28785;28786;28787;28788;28789;28790;28791;28792;28793;28794;28795;28796;28797;28798;28799;28800;28801;28802;28803;28804;28805;28806;28807;28808;28809;28810;28811;28812;28813;28814;28815;28816;28817;28818;28819;28820;28821;28822;28823;28824;28825;28826;28827;28828;28829;28830;28831;28832;28833;28834;28835;28836;28837;28838;28839;28840;28841;28842;28843;28844;28845;28846;28847;28848;28849;28850;28851;28852;28853;28854;28855;28856;28857;28858;28859;28860;28861;28862;28863;28864;28865;28866;28867;28868;28869;28870;28871;28872;28873;28874;28875;28876;28877;28878;28879;28880;28881;28882;28883;28884;28885;28886;28887;28888;28889;28890;28891;28892;28893;28894;28895;28896;28897;28898;28899;28900;28901;28902;28903;28904;28905;28906;28907;28908;28909;28910;28911;28912;28913;28914;28915;28916;28917;28918;28919;28920;28921;28922;28923;28924;28925;28926;28927;28928;28929;28930;28931;28932;28933;28934;28935;28936;28937;28938;28939;28940;28941;28942;28943;28944;28945;28946;28947;28948;28949;28950;28951;28952;28953;28954;28955;28956;28957;28958;28959;28960;28961;28962;28963;28964;28965;28966;28967;28968;28969;28970;28971;28972;28973 28717 289 AVLVAGGVEAEKLDKLPR Unmodified 1864.0782 0.078197327 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 8 9 9 20 19 21 11 8 13 32.618 31.586 2;3;4 1.914E-54 9158 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 334.04 334.04 32019000000 0 0 8545700 25445000 24995000 24873000 0 0 0 1873800000 1955800000 1743800000 0 0 0 7928200000 4848900000 5709500000 0 0 0 2817000000 2465400000 2592600000 2374 463 2294 46857;46858;46859;46860;46861;46862;46863;46864;46865;46866;46867;46868;46869;46870;46871;46872;46873;46874;46875;46876;46877;46878;46879;46880;46881;46882;46883;46884;46885;46886;46887;46888;46889;46890;46891;46892;46893;46894;46895;46896;46897;46898;46899;46900;46901;46902;46903;46904;46905;46906;46907;46908;46909;46910;46911;46912;46913;46914;46915;46916;46917;46918;46919;46920;46921;46922;46923;46924;46925;46926;46927;46928;46929;46930;46931;46932;46933;46934;46935;46936;46937;46938;46939;46940;46941;46942;46943;46944;46945;46946;46947;46948;46949;46950;46951;46952;46953;46954;46955;46956;46957;46958;46959;46960;46961;46962;46963;46964;46965;46966;46967;46968;46969;46970;46971;46972;46973;46974;46975;46976;46977;46978;46979;46980;46981 28974;28975;28976;28977;28978;28979;28980;28981;28982;28983;28984;28985;28986;28987;28988;28989;28990;28991;28992;28993;28994;28995;28996;28997;28998;28999;29000;29001;29002;29003;29004;29005;29006;29007;29008;29009;29010;29011;29012;29013;29014;29015;29016;29017;29018;29019;29020;29021;29022;29023;29024;29025;29026;29027;29028;29029;29030;29031;29032;29033;29034;29035;29036;29037;29038;29039;29040;29041;29042;29043;29044;29045;29046;29047;29048;29049;29050;29051;29052;29053;29054;29055;29056;29057;29058;29059;29060;29061;29062;29063;29064;29065;29066;29067;29068;29069;29070;29071;29072;29073;29074;29075;29076;29077;29078;29079;29080;29081;29082;29083;29084;29085;29086;29087 28983 104 AVLVNIFGGIVR Unmodified 1256.7605 0.760492 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 52.489 51.274 2;3 1.2088E-06 25014 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 140.49 139.01 10210000000 1361300000 1223700000 1385400000 9030900 10947000 9144900 376140000 377330000 372310000 4255400 4313800 3603100 472320000 497140000 458000000 3389400 0 2639200 1295800000 1122300000 1199800000 6777500 6429100 8340900 2375 392 2295 46982;46983;46984;46985;46986;46987;46988;46989;46990;46991;46992;46993;46994;46995;46996;46997;46998;46999;47000;47001;47002;47003;47004;47005;47006;47007;47008;47009;47010;47011;47012;47013;47014;47015;47016;47017;47018 29088;29089;29090;29091;29092;29093;29094;29095;29096;29097;29098;29099;29100;29101;29102;29103;29104;29105;29106;29107;29108;29109;29110;29111;29112;29113;29114;29115;29116;29117;29118;29119;29120 29101 33 AVMALTALASDR Unmodified 1217.6438 0.64380726 1766 P75736 ybfF Esterase YbfF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.005 35.331 2 2.7104E-08 17109 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 196.88 168.7 276090000 36898000 36649000 38339000 0 0 0 18297000 16667000 15887000 0 0 0 13736000 15083000 18082000 0 0 0 22075000 21896000 22479000 0 0 0 2376 1766 2296 47019;47020;47021;47022;47023;47024;47025;47026;47027;47028;47029;47030 29121;29122;29123;29124;29125;29126;29127;29128;29129;29130;29131;29132 29127 12 AVMCVDDPVIR Unmodified 1273.6159 0.61587795 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 1 1 1 1 2 2 2 2 1 1 1 2 1 1 2 2 1 1 1 26.275 25.418 2;3 0.00010712 13258 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 118.5 116.44 771740000 78429000 45516000 52387000 1371700 1404900 1887000 77873000 72639000 76820000 0 4216900 5155000 37286000 47086000 40297000 0 0 0 62661000 84004000 75942000 2305400 2022100 2439500 2377 1145 2297 47031;47032;47033;47034;47035;47036;47037;47038;47039;47040;47041;47042;47043;47044;47045;47046;47047;47048;47049;47050;47051;47052;47053;47054;47055;47056;47057;47058 29133;29134;29135;29136;29137;29138;29139;29140 29140 8 AVMDDFAAFVEK Unmodified 1341.6275 0.6274885 9 CON__P02768-1 yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 49.431 48.607 2 0.00010015 19551 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.297 76.432 14566000 0 0 0 0 0 0 0 0 0 4678800 3234500 0 0 0 0 4381500 2271400 0 0 0 0 0 0 0 + 2378 9 2298 47059;47060;47061;47062 29141 29141 1 AVMLQASTALNK Unmodified 1245.6751 0.67510739 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 25.6 24.572 2 1.0873E-05 8125 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 129.38 109.24 25872000 3178500 3180500 2605600 4847200 6546100 5513900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2379 152 2299 47063;47064;47065;47066;47067;47068 29142;29143;29144 29142 3 AVMTGLK Unmodified 718.40475 0.40474619 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 14.826 15.506 1;2 0.0023399 5159 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.02 91.401 1750700000 136870000 129250000 87984000 1067800 0 752120 183550000 199150000 191630000 5847700 5238700 1696400 140100000 131060000 116940000 1192000 0 0 158320000 130430000 129650000 0 0 0 2380 319 2300 47069;47070;47071;47072;47073;47074;47075;47076;47077;47078;47079;47080;47081;47082;47083;47084;47085;47086;47087;47088;47089;47090;47091;47092;47093;47094;47095;47096;47097 29145;29146;29147;29148;29149;29150;29151;29152;29153;29154;29155;29156;29157;29158 29153 14 AVNDAIAEMQK Unmodified 1188.5809 0.58087266 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.877 22.348 2 2.076E-05 9523 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 135.55 127.33 4416500000 547890000 468350000 507960000 0 0 0 408280000 413100000 441950000 0 0 0 272720000 251800000 246320000 0 0 0 282440000 280810000 294880000 0 0 0 2381 874 2301 47098;47099;47100;47101;47102;47103;47104;47105;47106;47107;47108;47109 29159;29160;29161;29162;29163;29164;29165;29166;29167;29168;29169;29170 29165 12 AVNDSVK Unmodified 731.38137 0.38136821 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 9.0376 9.9781 2 0.11154 2016 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 51.787 14.693 111470000 0 0 0 0 0 0 0 0 0 0 0 0 54652000 52735000 4085500 0 0 0 0 0 0 0 0 0 2382 975 2302 47110;47111;47112 29171 29171 1 AVNGLFEVVK Unmodified 1074.6073 0.6073454 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.61 34.985 2 0.0031324 16045 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 87.639 59.465 414840000 45824000 40072000 34767000 0 0 0 40606000 34716000 32842000 0 0 0 24314000 22724000 18869000 0 0 0 37356000 40508000 41900000 345280 0 0 2383 1298 2303 47113;47114;47115;47116;47117;47118;47119;47120;47121;47122;47123;47124;47125 29172;29173;29174;29175;29176;29177;29178;29179 29179 8 AVNITHSYEVVAA Unmodified 1372.6987 0.69867961 816 P0ADX1 yhfA Protein YhfA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.558 28.302 2 5.0418E-06 13404 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 162.88 157.06 1051200000 109050000 95142000 86867000 0 0 0 106240000 96136000 99277000 0 0 0 73588000 65767000 56302000 0 0 0 86429000 85698000 90665000 0 0 0 2384 816 2304 47126;47127;47128;47129;47130;47131;47132;47133;47134;47135;47136;47137 29180;29181;29182;29183;29184;29185;29186;29187 29181 8 AVNLNEGTLTLNDSTVTTDVIAQR Unmodified 2544.3031 0.30312448 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 45.325 44.029 2 5.5944E-97 20603 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 320.05 308.07 76659000 5918000 5140600 0 0 0 0 0 0 0 0 0 0 16235000 19396000 14006000 0 0 0 6685000 4369900 4909200 0 0 0 2385 1513 2305 47138;47139;47140;47141;47142;47143;47144;47145 29188;29189 29189 2 AVNPNIR Unmodified 782.43989 0.43988615 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.31 12.782 2 0.0018969 3015 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 121.87 97.516 739000000 13841000 0 0 2351800 0 0 14901000 11017000 11384000 111160000 78684000 77244000 0 0 0 81758000 56035000 63715000 20850000 15482000 23199000 58886000 53529000 44958000 2386 1616 2306 47146;47147;47148;47149;47150;47151;47152;47153;47154;47155;47156;47157;47158;47159;47160;47161;47162 29190;29191;29192;29193;29194;29195;29196;29197;29198 29193 9 AVNPNIRDDELTAIESNR Unmodified 2026.0079 0.0079455095 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 3 3 3 1 1 1 4 4 3 1 1 1 3 3 4 29.522 28.267 2;3;4 1.8185E-45 10626 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 305.69 294.43 22739000000 3232700 0 0 2935900 2542900 3252700 38608000 0 0 2522300000 2641600000 2421700000 34175000 32278000 26725000 3013100000 2669300000 2877200000 42072000 46511000 45349000 2018800000 2165000000 2132200000 2387 1616 2307 47163;47164;47165;47166;47167;47168;47169;47170;47171;47172;47173;47174;47175;47176;47177;47178;47179;47180;47181;47182;47183;47184;47185;47186;47187;47188;47189;47190;47191;47192;47193;47194;47195;47196;47197;47198;47199;47200;47201;47202;47203 29199;29200;29201;29202;29203;29204;29205;29206;29207;29208;29209;29210;29211;29212;29213;29214;29215;29216;29217;29218;29219;29220;29221;29222;29223;29224;29225;29226;29227;29228;29229;29230;29231;29232;29233;29234;29235;29236;29237;29238;29239;29240;29241;29242 29219 44 AVNTTLNGGEQWMHEGAIATGTVINDK Unmodified 2826.3607 0.36065613 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 40.06 38.557 3 8.1791E-31 17987 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 180.83 178.42 101340000 6432000 5645600 4034700 0 0 0 0 0 0 0 0 0 18664000 23795000 20644000 0 0 0 8138800 7031500 6950700 0 0 0 2388 1513 2308 47204;47205;47206;47207;47208;47209;47210;47211;47212 29243;29244;29245;29246 29245 4 AVPADFNGGSFGR Unmodified 1293.6102 0.61019895 77 P02943 lamB Maltoporin yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.556 27.284 2 0.14129 12497 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 39.266 34.653 48859000 0 0 0 583480 0 0 0 0 0 5117100 4310300 4194800 0 0 0 1632700 843750 905420 6390500 6432200 5247500 4275300 4174100 4751900 2389 77 2309 47213;47214;47215;47216;47217;47218;47219;47220;47221;47222;47223;47224;47225 29247 29247 0 AVPANER Unmodified 755.3926 0.3926016 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 3 1 4 4 2 6.5339 7.3957 2 0.0045644 1879 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 103.29 94.603 147400000 22914000 18292000 22514000 0 0 0 866120 0 0 0 0 0 15166000 5570900 20978000 0 0 0 7241000 5339100 28515000 0 0 0 2390 337 2310 47226;47227;47228;47229;47230;47231;47232;47233;47234;47235;47236;47237;47238;47239;47240;47241;47242;47243;47244 29248;29249;29250;29251;29252;29253;29254;29255;29256;29257;29258;29259;29260;29261;29262;29263;29264;29265;29266 29255 19 AVPATKK Unmodified 713.44357 0.44357454 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 8.1328 8.5458 2 0.017447 786 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 83.287 30.988 135190000 0 0 0 14413000 11273000 10906000 0 0 2795000 7874200 8097000 6163400 0 0 0 12406000 3763400 4879400 0 0 0 16674000 17737000 18208000 2391 364 2311 47245;47246;47247;47248;47249;47250;47251;47252;47253;47254;47255;47256;47257 29267;29268;29269;29270;29271;29272;29273;29274;29275;29276 29276 10 AVQAGIPLAR Unmodified 994.59236 0.59236404 1533 P39377 iadA Isoaspartyl dipeptidase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.246 23.341 2 0.0027508 10127 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 77.072 75.986 274620000 28582000 26867000 23770000 589840 0 525650 33824000 29354000 28534000 0 0 0 14907000 14215000 14057000 0 0 0 21488000 20839000 17067000 0 0 0 2392 1533 2312 47258;47259;47260;47261;47262;47263;47264;47265;47266;47267;47268;47269;47270;47271 29277;29278;29279;29280 29278 1 AVQAVVHHNETADR Unmodified 1545.7648 0.76480211 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 10.618 11.318 2;3 1.6405E-14 2687 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 240.33 193.86 613670000 207740000 210710000 195210000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2393 1822 2313 47272;47273;47274;47275;47276;47277 29281;29282;29283;29284 29281 4 AVQDVILK Unmodified 884.53312 0.53311783 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.419 23.509 2 0.0030318 10161 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 95.531 51.136 8740200000 706430000 635670000 656930000 185130000 160240000 181390000 1064300000 992530000 1045700000 176270000 157030000 154650000 336940000 276750000 329110000 9699600 8195100 7929700 334610000 333100000 342370000 209280000 217580000 218360000 2394 548 2314 47278;47279;47280;47281;47282;47283;47284;47285;47286;47287;47288;47289;47290;47291;47292;47293;47294;47295;47296;47297;47298;47299;47300;47301 29285;29286;29287;29288;29289;29290;29291;29292;29293;29294;29295;29296;29297;29298;29299;29300;29301;29302;29303;29304;29305 29301 21 AVQEQVASEK Unmodified 1087.551 0.55095274 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 3 2 1 1 1 2 2 2 1 1 1 13.818 14.414 2 5.7444E-09 3112 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 191.45 156.64 11777000000 685900000 697990000 684200000 0 7702800 0 1267200000 1209600000 1151400000 14233000 13903000 12180000 1004500000 992820000 959120000 9219400 10663000 6585200 1121300000 946750000 960850000 8821400 5118900 7202100 2395 192 2315 47302;47303;47304;47305;47306;47307;47308;47309;47310;47311;47312;47313;47314;47315;47316;47317;47318;47319;47320;47321;47322;47323;47324;47325;47326;47327;47328;47329;47330;47331;47332;47333;47334;47335;47336;47337;47338 29306;29307;29308;29309;29310;29311;29312;29313;29314;29315;29316;29317;29318;29319;29320;29321;29322;29323;29324 29318 18 AVQEQVASEKAELAK Unmodified 1599.8468 0.84680041 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 15.836 16.131 3 0.016649 4031 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 42.958 36.271 33317000 0 0 0 3737200 4083500 3221700 0 0 0 5078700 2731900 3111900 0 0 0 2208200 1622500 1917000 0 0 0 3381100 0 2223300 2396 192 2316 47339;47340;47341;47342;47343;47344;47345;47346;47347;47348;47349 29325;29326 29326 2 AVQLGGVALGTTQVINSK Unmodified 1754.989 0.98904797 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 1 38.999 37.134 2;3 5.1214E-18 14635 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 225.13 224.79 2697700000 799350000 585880000 633930000 19997000 23601000 22361000 152350000 128040000 125890000 36348000 35147000 34428000 17317000 15513000 0 0 0 0 9669200 20262000 34836000 0 0 2788600 2397 677 2317 47350;47351;47352;47353;47354;47355;47356;47357;47358;47359;47360;47361;47362;47363;47364;47365;47366;47367;47368;47369;47370;47371;47372;47373;47374;47375;47376;47377;47378;47379;47380;47381;47382 29327;29328;29329;29330;29331;29332;29333;29334;29335;29336;29337;29338;29339;29340;29341;29342;29343;29344;29345;29346;29347;29348;29349 29331 23 AVQLNSLSGFCLTK Unmodified 1536.797 0.79701344 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 42.628 40.856 2;3 8.4591E-12 19795 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 210.87 204.9 3078300000 260640000 242180000 227630000 261120 0 2965400 243290000 208900000 235680000 2511500 0 2004700 235430000 234320000 252950000 0 0 0 319430000 307010000 303080000 0 0 0 2398 333 2318 47383;47384;47385;47386;47387;47388;47389;47390;47391;47392;47393;47394;47395;47396;47397;47398;47399;47400;47401;47402;47403;47404;47405;47406;47407;47408;47409 29350;29351;29352;29353;29354;29355;29356;29357;29358;29359;29360;29361;29362;29363;29364;29365;29366 29361 16 AVQNAMR Unmodified 788.39631 0.39630677 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.856 11.486 2 0.071017 2781 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 69.093 65.24 3549800000 504420000 509760000 457800000 15875000 14872000 20088000 140210000 152190000 153940000 40777000 39065000 36682000 188450000 166810000 166320000 0 27923000 40825000 295130000 280040000 235590000 35688000 27367000 0 2399 374 2319 47410;47411;47412;47413;47414;47415;47416;47417;47418;47419;47420;47421;47422;47423;47424;47425;47426;47427;47428;47429;47430;47431 29367;29368;29369;29370;29371;29372;29373 29369 0 AVQQNKPTR Unmodified 1040.5727 0.57269123 359 P0A7N4 rpmF 50S ribosomal protein L32 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.0115 7.6179 2 2.0775E-05 1851 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 163.99 122.48 2856400000 307990000 363820000 345040000 8720200 9977100 7767100 148780000 129240000 134610000 31955000 31818000 31075000 176230000 157930000 125620000 43280000 12429000 12242000 262910000 225640000 210420000 29478000 28530000 20885000 2400 359 2320 47432;47433;47434;47435;47436;47437;47438;47439;47440;47441;47442;47443;47444;47445;47446;47447;47448;47449;47450;47451;47452;47453;47454;47455 29374;29375;29376;29377;29378;29379;29380;29381;29382;29383;29384;29385;29386;29387;29388;29389;29390;29391;29392;29393;29394;29395;29396;29397 29374 24 AVQVIVR Unmodified 783.49667 0.49667274 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.87 17.509 2 0.0018969 6183 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.87 78.872 1170300000 106080000 94750000 91498000 0 0 0 167190000 155380000 166330000 0 412960 513900 72317000 70869000 67675000 0 0 0 61581000 59276000 56444000 0 0 0 2401 1333 2321 47456;47457;47458;47459;47460;47461;47462;47463;47464;47465;47466;47467;47468;47469 29398;29399;29400;29401;29402;29403;29404;29405;29406 29403 9 AVSDIHFR Unmodified 943.48756 0.48756462 203 P09148 galT Galactose-1-phosphate uridylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 16.276 17.138 2 0.0052891 5972 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.866 42.174 34143000 8173300 7739700 5460200 0 0 0 0 0 0 0 0 0 0 0 2987100 0 0 0 0 5402900 4379600 0 0 0 2402 203 2322 47470;47471;47472;47473;47474;47475;47476 29407;29408;29409 29407 3 AVSDVAERDPGYLR Unmodified 1546.774 0.77396981 867 P0AEK0 exoX Exodeoxyribonuclease 10 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.318 20.733 3 0.0033199 8445 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 61.212 56.498 91730000 5168100 5120900 5021000 0 0 0 8069000 8305700 7213300 0 0 0 7677800 9189400 6206800 0 0 0 10076000 10134000 9548400 0 0 0 2403 867 2323 47477;47478;47479;47480;47481;47482;47483;47484;47485;47486;47487;47488 29410;29411;29412 29410 3 AVSEATAEVDVISAAALSEQQLAK Unmodified 2400.2384 0.23839896 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 51.72 50.405 2;3 1.4803E-40 24562 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 292.27 280.58 1504600000 37602000 35121000 32199000 22487000 20696000 21328000 93447000 85350000 92926000 62340000 58913000 53384000 141150000 125600000 122120000 0 0 0 111120000 115790000 133780000 45915000 46160000 47128000 2404 643 2324 47489;47490;47491;47492;47493;47494;47495;47496;47497;47498;47499;47500;47501;47502;47503;47504;47505;47506;47507;47508;47509;47510;47511;47512;47513;47514;47515;47516;47517;47518;47519;47520;47521;47522;47523;47524;47525;47526;47527;47528;47529;47530 29413;29414;29415;29416;29417;29418;29419;29420;29421;29422;29423;29424;29425;29426;29427;29428;29429;29430;29431;29432 29422 20 AVSGLQVR Unmodified 828.48175 0.48175096 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.27 15.877 2 0.0072677 4502 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 83.614 49.876 56955000 0 4190400 2574400 885490 820770 1037800 8009800 4872200 5194400 4266500 3231000 3037400 4121000 2894900 3890000 0 0 0 0 3693800 0 1125700 1653600 1455800 2405 1877 2325 47531;47532;47533;47534;47535;47536;47537;47538;47539;47540;47541;47542;47543;47544;47545;47546;47547;47548 29433;29434 29433 2 AVSMARPYNAK Unmodified 1206.6179 0.61792687 847 P0AED0 uspA Universal stress protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 12.781 13.08 2;3 2.0898E-10 3053 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 196.79 182.59 645430000 0 0 0 75662000 73709000 73353000 0 0 0 97595000 97440000 96239000 0 0 0 21294000 20759000 15716000 0 0 0 25960000 26171000 21527000 2406 847 2326 47549;47550;47551;47552;47553;47554;47555;47556;47557;47558;47559;47560;47561;47562;47563;47564;47565;47566;47567;47568;47569 29435;29436;29437;29438;29439;29440;29441;29442;29443;29444;29445;29446;29447;29448;29449;29450 29445 16 AVSMARPYNAK Oxidation (M) 1222.6128 0.61284149 847 P0AED0 uspA Universal stress protein A yes yes 0 1 1 By MS/MS By MS/MS By matching By matching 1 2 1 1 10.631 11.472 2;3 0.0073837 2105 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 68.371 51.274 26368000 0 0 0 6851700 8909900 4735200 0 0 0 5870900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2407 847 2326 47570;47571;47572;47573;47574 29451;29452 29452 394 2 AVSTLPADVQAK Unmodified 1198.6558 0.65575216 1072 P11557 damX Cell division protein DamX yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.327 20.486 2 3.2776E-05 6701 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 113.1 101.46 432380000 23774000 21915000 14028000 5463200 5548300 5027300 47621000 43678000 44021000 15894000 13571000 11764000 38138000 0 31017000 0 1985100 2599000 41111000 44163000 0 7080900 6553800 7422600 2408 1072 2327 47575;47576;47577;47578;47579;47580;47581;47582;47583;47584;47585;47586;47587;47588;47589;47590;47591;47592;47593;47594;47595 29453;29454;29455;29456;29457;29458;29459;29460;29461 29454 9 AVTAAVEELK Unmodified 1029.5706 0.57062555 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.068 21.881 2 3.1994E-05 9210 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 144.12 93.156 28796000000 2736100000 2469900000 2219200000 83369000 77889000 68890000 2253300000 2472000000 2178700000 88603000 66929000 72842000 2019700000 1750500000 1867500000 25730000 19216000 18397000 2815700000 2587100000 2722100000 75386000 56131000 50347000 2409 240 2328 47596;47597;47598;47599;47600;47601;47602;47603;47604;47605;47606;47607;47608;47609;47610;47611;47612;47613;47614;47615;47616;47617;47618;47619 29462;29463;29464;29465;29466;29467;29468;29469;29470;29471;29472;29473;29474;29475;29476;29477;29478;29479;29480;29481;29482;29483;29484;29485;29486;29487;29488 29468 27 AVTAEVEAALGNR Unmodified 1299.6783 0.67827852 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 1 2 2 1 1 1 31.818 30.381 2;3 9.9023E-18 14474 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 172.11 167.41 948140000 74659000 73643000 72594000 0 0 0 117570000 107010000 104980000 1722400 0 0 98133000 19013000 94958000 0 0 0 129440000 30303000 23055000 0 0 1065900 2410 1360 2329 47620;47621;47622;47623;47624;47625;47626;47627;47628;47629;47630;47631;47632;47633;47634;47635;47636;47637;47638;47639;47640;47641;47642 29489;29490;29491;29492;29493;29494;29495;29496;29497;29498;29499;29500;29501;29502;29503;29504;29505 29493 12 AVTAHHTVLVSNIIGVER Unmodified 1915.0639 0.063944246 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 26.156 24.945 2;3 8.6346E-30 11066 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 170.09 160.82 579830000 43471000 37496000 44781000 1837300 1435800 1707100 48203000 52206000 53284000 2517900 2526400 2240000 47329000 46436000 41017000 0 0 0 54183000 49786000 45152000 1266500 1506700 1452000 2411 1172 2330 47643;47644;47645;47646;47647;47648;47649;47650;47651;47652;47653;47654;47655;47656;47657;47658;47659;47660;47661;47662;47663;47664;47665;47666;47667;47668;47669;47670;47671;47672;47673;47674;47675 29506;29507;29508;29509;29510;29511;29512;29513;29514;29515;29516;29517 29512 10 AVTDKPSLLMCK Oxidation (M) 1377.6996 0.69960758 1299 P27302 tktA Transketolase 1 yes yes 0 1 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 2 2 2 2 2 2 1 2 2 2 17.458 18.13 2;3 0.00056929 6873 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 83.883 66.063 156020000 3407900 3844800 7213500 0 0 0 25481000 30413000 21513000 0 0 0 9165400 9638100 6850200 0 0 0 13166000 13403000 11923000 0 0 0 2412 1299 2331 47676;47677;47678;47679;47680;47681;47682;47683;47684;47685;47686;47687;47688;47689;47690;47691;47692;47693;47694;47695;47696 29518;29519;29520 29518 527 3 AVTDKPSLLMCK Unmodified 1361.7047 0.70469296 1299 P27302 tktA Transketolase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 21.729 21.774 2;3 4.0531E-06 8874 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.05 139.85 10325000000 571340000 513150000 438310000 0 0 1466300 1023500000 891940000 998260000 0 0 0 981410000 940490000 803520000 0 0 0 1073900000 1055300000 1032600000 0 0 0 2413 1299 2331 47697;47698;47699;47700;47701;47702;47703;47704;47705;47706;47707;47708;47709;47710;47711;47712;47713;47714;47715;47716;47717;47718;47719;47720;47721 29521;29522;29523;29524;29525;29526;29527;29528;29529;29530;29531;29532;29533;29534;29535;29536;29537;29538;29539;29540;29541;29542;29543 29531 23 AVTDSVLITVK Unmodified 1144.6703 0.67033959 1532 P39371 nanM N-acetylneuraminate epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.12 31.68 2 0.0025687 15085 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 71.349 55.146 134990000 26119000 22388000 18223000 0 0 0 10374000 11316000 12816000 0 0 0 6218100 6846300 5144200 0 0 0 6149800 5072300 4324400 0 0 0 2414 1532 2332 47722;47723;47724;47725;47726;47727;47728;47729;47730;47731;47732;47733 29544;29545;29546 29544 0 AVTELNQHAPLAMVGDGINDAPAMK Unmodified 2562.257 0.25704268 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 39.336 37.427 3 9.9443E-07 15185 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 92.886 89.55 105460000 5141500 0 5774000 2371800 2472300 2010700 12327000 10071000 10139000 4639400 0 5916200 0 11460000 0 0 0 0 10203000 0 13029000 1920400 3931800 4047600 2415 1475 2333 47734;47735;47736;47737;47738;47739;47740;47741;47742;47743;47744;47745;47746;47747;47748;47749;47750 29547;29548;29549 29547 3 AVTGTMLVAAMK Unmodified 1191.6356 0.63555076 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.352 32.904 2 2.0424E-05 15579 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.28 114.63 600930000 92891000 89501000 84103000 0 0 0 38024000 41602000 34409000 0 0 0 32264000 31090000 31317000 0 0 0 40223000 42779000 42730000 0 0 0 2416 235 2334 47751;47752;47753;47754;47755;47756;47757;47758;47759;47760;47761;47762 29550;29551;29552;29553;29554;29555;29556 29552 5 AVTGTMLVAAMKEDGVNIWGDGSTYKGNDIER Unmodified 3397.6282 0.62824014 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 47.092 45.673 4 4.1444E-07 16386 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 66.879 61.56 16637000 0 0 0 5596600 5397900 5642100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2417 235 2335 47763;47764;47765 29557;29558;29559 29558 3 AVTLGLK Unmodified 700.44833 0.44832557 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 18.097 18.692 2 0.017717 7255 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 79.454 7.4329 112180000 32541000 0 0 0 0 539790 7958300 0 9660300 0 0 0 0 9485300 8628400 0 0 0 14733000 15331000 13308000 0 0 0 2418 1254 2336 47766;47767;47768;47769;47770;47771;47772;47773;47774 29560;29561;29562;29563;29564;29565;29566;29567 29560 8 AVTLYLGAVAATVR Unmodified 1403.8136 0.81364979 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 2 2 45.71 44.325 2;3 1.1197E-06 16372 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 158.05 155.89 1660300000 159970000 153720000 127000000 25992000 25856000 28328000 58356000 58781000 51925000 66935000 66495000 87111000 79376000 79072000 69414000 43916000 21284000 28382000 103790000 101860000 81817000 42844000 48484000 49610000 2419 373 2337 47775;47776;47777;47778;47779;47780;47781;47782;47783;47784;47785;47786;47787;47788;47789;47790;47791;47792;47793;47794;47795;47796;47797;47798;47799;47800;47801;47802;47803;47804;47805;47806;47807;47808;47809;47810;47811;47812;47813;47814;47815;47816;47817;47818;47819;47820;47821;47822;47823;47824;47825;47826 29568;29569;29570;29571;29572;29573;29574;29575;29576;29577;29578;29579;29580;29581;29582;29583;29584;29585;29586;29587;29588;29589;29590;29591;29592;29593;29594;29595;29596;29597;29598;29599;29600;29601;29602;29603;29604;29605;29606;29607;29608;29609;29610;29611;29612;29613;29614;29615 29568 45 AVTNSPVVVALDYHNR Unmodified 1753.9111 0.911132 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.244 29.887 3 1.004E-08 14067 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 124.09 119.55 1754100000 256210000 204870000 193300000 0 0 0 78282000 62651000 71935000 0 0 0 132130000 136030000 126190000 0 0 0 160260000 163410000 168880000 0 0 0 2420 181 2338 47827;47828;47829;47830;47831;47832;47833;47834;47835;47836;47837;47838 29616;29617;29618;29619;29620;29621;29622;29623;29624;29625;29626;29627 29622 12 AVTNVAELNALVER Unmodified 1497.8151 0.81510635 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 40.466 38.739 2;3 6.8357E-45 19177 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 276.35 246.88 8574200000 742550000 672630000 655470000 174110000 186720000 172990000 906920000 866180000 924880000 132530000 138100000 143280000 395530000 415780000 355430000 9658700 6799600 6354800 378280000 399220000 387680000 159270000 174090000 169790000 2421 548 2339 47839;47840;47841;47842;47843;47844;47845;47846;47847;47848;47849;47850;47851;47852;47853;47854;47855;47856;47857;47858;47859;47860;47861;47862;47863;47864;47865;47866;47867;47868;47869;47870;47871;47872;47873;47874;47875;47876;47877;47878;47879;47880;47881;47882;47883 29628;29629;29630;29631;29632;29633;29634;29635;29636;29637;29638;29639;29640;29641;29642;29643;29644;29645;29646;29647;29648;29649;29650;29651;29652;29653;29654;29655;29656;29657;29658;29659;29660;29661;29662;29663 29639 36 AVTPGTYQVPQPMVESMYVPQWR Unmodified 2663.2876 0.28761453 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 52.452 50.897 3 0.0088097 20672 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 43.349 35.988 15600000 0 0 0 0 0 0 0 0 0 6055600 5968200 3575900 0 0 0 0 0 0 0 0 0 0 0 0 2422 1877 2340 47884;47885;47886 29664 29664 1 AVTTGYMGTASQIK Unmodified 1426.7126 0.71261511 1549 P40191 pdxK Pyridoxine kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.255 22.529 2 0.0059231 10021 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.188 57.515 238920000 28724000 27168000 22608000 0 0 0 21389000 25290000 26355000 0 0 0 13607000 15281000 12347000 0 0 0 15756000 15421000 14970000 0 0 0 2423 1549 2341 47887;47888;47889;47890;47891;47892;47893;47894;47895;47896;47897;47898 29665;29666;29667;29668;29669;29670;29671;29672;29673;29674 29666 7 AVVAAVDALGLLEEIKPHDLTVPYGDR Unmodified 2860.5335 0.53345876 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.243 52.795 3;4 6.9086E-23 25831 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.49 169.73 4009900000 385680000 360030000 423460000 0 0 0 224320000 219590000 217940000 0 0 0 295820000 305710000 310850000 0 0 0 416900000 417880000 431760000 0 0 0 2424 158 2342 47899;47900;47901;47902;47903;47904;47905;47906;47907;47908;47909;47910;47911;47912;47913;47914;47915;47916;47917;47918;47919;47920;47921;47922 29675;29676;29677;29678;29679;29680;29681;29682;29683;29684;29685;29686;29687;29688;29689;29690 29684 16 AVVAGLAQADTLR Unmodified 1283.7197 0.7197494 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.977 28.621 2 1.4764E-12 13377 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 194.54 186.32 202320000 8491800 7420100 7843100 0 0 0 10918000 9648800 11072000 0 0 0 20941000 20409000 17010000 0 0 0 34918000 27289000 26360000 0 0 0 2425 1070 2343 47923;47924;47925;47926;47927;47928;47929;47930;47931;47932;47933;47934 29691;29692;29693 29692 3 AVVCSEPYSAQLSR Unmodified 1565.7508 0.75079153 1469 P37351 rpiB Ribose-5-phosphate isomerase B yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.745 23.753 2 0.00049606 10825 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.16 82.068 82942000 6494600 8399000 5529300 0 0 0 6844300 6919100 6777900 0 0 0 5686400 7119900 6185500 0 0 0 7436300 8016500 7533600 0 0 0 2426 1469 2344 47935;47936;47937;47938;47939;47940;47941;47942;47943;47944;47945;47946 29694;29695 29694 0 AVVEAGFK Unmodified 819.44905 0.44905385 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 17.092 17.77 2 0.14729 6417 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 49.358 33.919 50424000 0 0 0 0 0 0 9442100 7740300 7288300 0 0 0 0 0 0 0 0 0 9952900 7289600 8711000 0 0 0 2427 134 2345 47947;47948;47949;47950;47951;47952 29696 29696 0 AVVEALK Unmodified 728.44324 0.44324019 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 15.826 16.301 2 0.010377 4612 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 86.866 38.693 5934700000 521740000 559250000 492440000 7050500 6944000 7897600 456820000 411320000 375620000 5586200 5458600 6218800 0 0 0 5760100 4933500 4989000 929740000 988820000 1075600000 22936000 21164000 24436000 2428 938 2346 47953;47954;47955;47956;47957;47958;47959;47960;47961;47962;47963;47964;47965;47966;47967;47968;47969;47970;47971;47972;47973;47974;47975;47976 29697;29698;29699;29700;29701;29702;29703;29704;29705;29706;29707;29708;29709;29710 29699 14 AVVEALKR Unmodified 884.54435 0.54435122 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.54 13.24 2 0.0010615 3831 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.65 88.175 2045000000 184290000 161120000 204780000 5706000 4480700 3584300 83556000 96354000 96834000 6339500 6631100 6463000 136320000 120510000 120510000 0 0 0 255020000 238390000 252000000 19681000 22335000 20119000 2429 938 2347 47977;47978;47979;47980;47981;47982;47983;47984;47985;47986;47987;47988;47989;47990;47991;47992;47993;47994;47995;47996;47997 29711;29712;29713;29714;29715;29716;29717 29713 5 AVVEELAR Unmodified 885.49198 0.4919813 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 1 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 18.904 19.249 2 1.175E-05 7465 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 178.65 87.062 2935200000 262060000 250280000 228500000 30232000 28962000 33139000 219170000 208360000 209330000 46101000 40895000 37739000 181830000 161020000 131280000 13941000 10171000 10239000 278540000 239440000 235880000 26059000 23898000 28104000 2430 1210 2348 47998;47999;48000;48001;48002;48003;48004;48005;48006;48007;48008;48009;48010;48011;48012;48013;48014;48015;48016;48017;48018;48019;48020;48021;48022;48023;48024;48025;48026;48027;48028 29718;29719;29720;29721;29722;29723;29724;29725;29726;29727;29728;29729;29730;29731;29732;29733;29734;29735;29736;29737;29738;29739;29740 29725 23 AVVESIQR Unmodified 900.50288 0.50288033 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.429 14.988 2 1.0769E-05 4821 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 178.84 125.29 5669000000 710490000 741420000 658070000 30827000 0 30706000 304180000 307080000 261570000 73592000 69469000 73220000 358470000 362070000 338010000 26023000 21465000 23017000 611030000 547310000 0 39229000 41356000 40373000 2431 377 2349 48029;48030;48031;48032;48033;48034;48035;48036;48037;48038;48039;48040;48041;48042;48043;48044;48045;48046;48047;48048;48049;48050 29741;29742;29743;29744;29745;29746;29747;29748;29749;29750;29751;29752;29753;29754;29755;29756;29757 29745 17 AVVFDRHPEIGGLLTFGIPAFK Unmodified 2383.3052 0.30523715 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.883 50.628 4 4.6007E-06 24882 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.028 88.591 106650000 21069000 20162000 12915000 1485000 1632500 1910600 7450900 8818300 8020700 0 0 0 4347700 0 3097300 0 0 0 4887000 5981200 4873400 0 0 0 2432 219 2350 48051;48052;48053;48054;48055;48056;48057;48058;48059;48060;48061;48062;48063;48064 29758;29759;29760 29758 3 AVVHTVGPVWR Unmodified 1219.6826 0.68257603 420 P0A8D6 ymdB O-acetyl-ADP-ribose deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 1 2 22.263 22.067 2;3 2.6732E-06 9038 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 186.3 186.3 598590000 99251000 77366000 87949000 1384200 1357800 1384300 57426000 55267000 58355000 0 0 3343900 23882000 21478000 23747000 0 0 0 30203000 24739000 31453000 0 0 0 2433 420 2351 48065;48066;48067;48068;48069;48070;48071;48072;48073;48074;48075;48076;48077;48078;48079;48080;48081;48082;48083;48084;48085;48086;48087;48088;48089;48090;48091 29761;29762;29763;29764;29765;29766;29767;29768;29769;29770 29767 9 AVVIKPTLTGSLEK Unmodified 1454.8708 0.87083031 1330 P29208 menC o-succinylbenzoate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 26.017 24.897 2;3 1.1103E-05 11154 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 71.513 71.513 552400000 38890000 31155000 33658000 0 0 0 42635000 46047000 37702000 0 0 0 45250000 44102000 42261000 0 0 0 66905000 66567000 57233000 0 0 0 2434 1330 2352 48092;48093;48094;48095;48096;48097;48098;48099;48100;48101;48102;48103;48104;48105;48106;48107;48108;48109;48110;48111;48112;48113;48114 29771;29772;29773;29774;29775;29776;29777;29778;29779;29780;29781 29773 11 AVVLTVGTFLDGK Unmodified 1318.7497 0.74965254 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.162 46.757 2 5.1791E-07 23141 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.11 145.71 176250000 14417000 10545000 11319000 1005600 0 0 19833000 19152000 18935000 0 0 1148600 12804000 12981000 9965100 0 0 0 16033000 13818000 14292000 0 0 0 2435 280 2353 48115;48116;48117;48118;48119;48120;48121;48122;48123;48124;48125;48126;48127;48128 29782;29783;29784;29785;29786;29787;29788 29782 7 AVVMDHDANIISVSQR Unmodified 1753.8781 0.87811731 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 3 2 2 2 2 27.208 25.958 2;3 1.0711E-30 12133 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 255.54 250.05 19397000000 405660000 407270000 374210000 5916900 6609300 5568900 2141900000 2021600000 2353700000 11945000 13100000 11951000 1940200000 1709900000 2066500000 9669400 5472500 9804000 2000200000 1998800000 1861800000 13933000 10777000 10314000 2436 239 2354 48129;48130;48131;48132;48133;48134;48135;48136;48137;48138;48139;48140;48141;48142;48143;48144;48145;48146;48147;48148;48149;48150;48151;48152;48153;48154;48155;48156;48157;48158;48159;48160;48161;48162;48163;48164;48165;48166;48167;48168;48169;48170;48171;48172;48173;48174 29789;29790;29791;29792;29793;29794;29795;29796;29797;29798;29799;29800;29801;29802;29803;29804;29805;29806;29807;29808;29809;29810;29811;29812;29813;29814;29815;29816;29817;29818;29819;29820 29792 29 AVVMDHDANIISVSQR Oxidation (M) 1769.873 0.87303193 239 P0A6F3 glpK Glycerol kinase yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 2 4 2 2 3 22.718 22.205 2;3 1.6206E-18 9625 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 194.7 191.58 453240000 5088200 0 0 0 0 0 62965000 67567000 64054000 0 0 0 46667000 29631000 42866000 0 0 0 40630000 44154000 49620000 0 0 0 2437 239 2354 48175;48176;48177;48178;48179;48180;48181;48182;48183;48184;48185;48186;48187;48188;48189;48190;48191;48192;48193;48194;48195;48196;48197 29821;29822;29823;29824;29825;29826;29827;29828;29829;29830;29831;29832;29833;29834;29835;29836;29837;29838;29839;29840;29841;29842;29843;29844 29830 89 22 AVVNKPAVLLADEPTGNLDDALSEGILR Unmodified 2889.5448 0.54475173 551 P0A9R7 ftsE Cell division ATP-binding protein FtsE yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.357 48.93 3 4.7938E-08 19594 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 107.65 105.02 164490000 9719100 9450900 9136700 3165600 2463100 3433100 11496000 13967000 10005000 4054200 2800000 3571800 10719000 9089800 10023000 0 0 0 17222000 17814000 16358000 0 0 0 2438 551 2355 48198;48199;48200;48201;48202;48203;48204;48205;48206;48207;48208;48209;48210;48211;48212;48213;48214;48215 29845;29846;29847 29845 3 AVVSVPIIGIVK Unmodified 1193.7747 0.77474508 314 P0A761 nanE Putative N-acetylmannosamine-6-phosphate 2-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.734 46.32 2 0.0001043 23158 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 93.178 85.529 312440000 47968000 46021000 39098000 0 0 0 14548000 15240000 16396000 0 0 0 26349000 25803000 23050000 0 0 0 19950000 17924000 20094000 0 0 0 2439 314 2356 48216;48217;48218;48219;48220;48221;48222;48223;48224;48225;48226;48227 29848;29849;29850;29851;29852;29853;29854;29855;29856;29857;29858;29859 29848 12 AVVTPLPR Unmodified 851.52289 0.52288749 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 20.571 20.759 2 0.00071571 8078 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 126.2 112.05 414800000 28219000 26683000 29553000 3883900 3461200 3480400 20765000 23072000 23437000 9524800 8856100 8380600 24679000 24843000 24015000 5041400 2025300 0 35670000 48886000 40100000 7656500 5724700 6842300 2440 486 2357 48228;48229;48230;48231;48232;48233;48234;48235;48236;48237;48238;48239;48240;48241;48242;48243;48244;48245;48246;48247;48248;48249;48250;48251 29860;29861;29862;29863;29864;29865;29866;29867;29868;29869;29870;29871;29872;29873;29874 29870 10 AVVTSMAETAR Unmodified 1134.5703 0.57030797 1240 P24193 hypE Hydrogenase isoenzymes formation protein HypE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.536 17.983 2 7.4382E-05 6541 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.74 98.804 253970000 9203300 9013700 7624200 0 2083800 2244900 29977000 26893000 28581000 8287800 7929300 7727100 18437000 16652000 16539000 2253900 1148500 0 18469000 16434000 15715000 3150300 2751400 2852900 2441 1240 2358 48252;48253;48254;48255;48256;48257;48258;48259;48260;48261;48262;48263;48264;48265;48266;48267;48268;48269;48270;48271;48272;48273 29875;29876;29877;29878;29879 29876 4 AVVVTSGTTSEVLLNK Unmodified 1616.8985 0.89850163 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.645 30.288 2 5.1439E-19 14520 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 199.7 183.81 855710000 210460000 187020000 188530000 0 0 0 33778000 31751000 30899000 0 0 0 23187000 22704000 21957000 0 0 0 37426000 33803000 34197000 0 0 0 2442 1501 2359 48274;48275;48276;48277;48278;48279;48280;48281;48282;48283;48284;48285 29880;29881;29882;29883;29884;29885;29886;29887;29888;29889;29890;29891 29881 12 AVYADTEGFVSEMDTR Unmodified 1789.7829 0.78287952 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.031 37.351 2 1.4856E-30 18367 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 294.49 269.64 901550000 29825000 30519000 25892000 0 446390 0 121960000 107540000 120450000 0 0 0 83145000 73035000 75808000 0 0 0 80684000 71070000 81170000 0 0 0 2443 167 2360 48286;48287;48288;48289;48290;48291;48292;48293;48294;48295;48296;48297;48298 29892;29893;29894;29895;29896;29897;29898;29899;29900;29901;29902;29903 29894 11 AVYEAIGFVAKP Unmodified 1263.6863 0.68632401 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 38.747 37.073 2;3 0.0012432 17961 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 103.19 100.79 1505000000 104590000 87121000 94658000 0 0 0 147380000 118730000 110000000 0 0 0 125050000 121290000 116680000 0 0 0 169790000 163370000 146350000 0 0 0 2444 57 2361 48299;48300;48301;48302;48303;48304;48305;48306;48307;48308;48309;48310;48311;48312;48313;48314;48315;48316;48317;48318;48319;48320;48321;48322 29904;29905;29906;29907;29908;29909;29910;29911;29912;29913;29914;29915;29916;29917;29918;29919;29920;29921;29922;29923;29924;29925;29926 29912 23 AVYFPHQASNYDPDYDYECATQDGAK Unmodified 3024.2508 0.25083091 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 33.393 31.978 3 1.0469E-15 15223 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 147.08 147.08 105590000 0 0 0 1190000 828080 0 0 0 0 6422700 5138100 0 0 0 0 4263600 2097500 1939800 23066000 23566000 19860000 5694200 6060000 5461400 2445 486 2362 48323;48324;48325;48326;48327;48328;48329;48330;48331;48332;48333;48334;48335 29927;29928;29929;29930;29931;29932 29932 6 AVYGVGYR Unmodified 883.4552 0.45520186 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.316 18.72 2 0.08931 7076 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 58.246 54.126 92195000 14932000 13128000 12905000 878010 697710 710650 8634500 8590200 0 1761600 0 1986200 0 0 0 0 0 0 7808400 7320600 8952800 1227900 1397200 1265600 2446 1728 2363 48336;48337;48338;48339;48340;48341;48342;48343;48344;48345;48346;48347;48348;48349;48350;48351 29933 29933 0 AVYLHQR Unmodified 885.48209 0.48208531 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By MS/MS 1 11.004 11.919 2 0.122 2790 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 60.001 42.306 26728000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26728000 0 0 0 0 0 0 0 0 0 2447 585 2364 48352 29934 29934 0 AVYQGAGVSAK Unmodified 1049.5506 0.55055881 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.829 13.72 2 0.00020378 4143 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.01 96.323 4015600000 1202500000 1230200000 1278200000 4263400 4228000 3322800 37968000 41894000 39545000 0 0 0 18514000 15642000 14781000 0 0 0 41260000 43238000 39956000 0 0 0 2448 1219 2365 48353;48354;48355;48356;48357;48358;48359;48360;48361;48362;48363;48364;48365;48366;48367 29935;29936;29937;29938;29939;29940;29941;29942 29940 8 AVYQQVISK Unmodified 1034.576 0.57604528 1583 P45955 ybgF Uncharacterized protein YbgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 18.091 18.749 2 0.00040956 7138 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.71 85.284 1013000000 145800000 131560000 117670000 0 0 0 92214000 0 0 0 0 0 98041000 91062000 82520000 0 0 0 128140000 0 125940000 0 0 0 2449 1583 2366 48368;48369;48370;48371;48372;48373;48374;48375;48376;48377;48378 29943;29944;29945;29946;29947;29948;29949;29950;29951 29944 9 AWAALSEFTGR Unmodified 1207.5986 0.59857163 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.264 40.632 2 3.5446E-14 18984 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 208.37 200.68 982870000 27312000 25791000 24464000 5013200 5545200 5275000 63331000 54096000 56835000 28648000 28069000 27054000 41547000 40944000 34843000 5583200 5539800 4979500 69572000 70831000 64115000 98194000 96554000 98739000 2450 205 2367 48379;48380;48381;48382;48383;48384;48385;48386;48387;48388;48389;48390;48391;48392;48393;48394;48395;48396;48397;48398;48399;48400;48401;48402 29952;29953;29954;29955;29956;29957;29958;29959;29960;29961;29962;29963;29964;29965;29966;29967;29968;29969;29970 29970 16 AWAEQLYLSMCHEVQK Unmodified 1991.9234 0.92335294 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 42.899 41.141 2;3 3.8923E-08 19246 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 115.57 85.369 1119500000 95311000 75971000 76964000 2398100 1738500 1342900 101660000 99150000 81220000 5138300 4680700 3859900 94571000 83197000 96962000 0 0 0 106920000 93002000 93050000 0 2373600 0 2451 1172 2368 48403;48404;48405;48406;48407;48408;48409;48410;48411;48412;48413;48414;48415;48416;48417;48418;48419;48420;48421;48422;48423;48424;48425;48426;48427;48428;48429;48430;48431;48432;48433 29971;29972;29973;29974;29975;29976;29977;29978;29979;29980;29981 29980 11 AWASGTMWR Unmodified 1064.4862 0.48618441 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.073 29.594 2 5.5819E-05 11736 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 147.52 143.16 721570000 0 0 1943700 0 502490 0 65541000 58028000 56589000 15752000 13129000 15715000 70773000 69501000 63997000 0 3997600 4261900 80950000 83173000 80714000 13011000 11730000 12260000 2452 723 2369 48434;48435;48436;48437;48438;48439;48440;48441;48442;48443;48444;48445;48446;48447;48448;48449;48450;48451;48452 29982;29983;29984;29985;29986;29987;29988;29989;29990;29991 29982 10 AWASGTMWRGMEEIVK Unmodified 1850.8808 0.88075985 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.39 46.001 3 0.16833 22604 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 9.788 5.6166 281860000 16537000 14894000 11798000 0 0 0 21293000 21097000 24000000 0 0 0 32548000 28862000 33481000 0 0 0 28004000 24672000 24676000 0 0 0 2453 723 2370 48453;48454;48455;48456;48457;48458;48459;48460;48461;48462;48463;48464 29992 29992 1 AWDAWVVAGHAPVR Unmodified 1533.7841 0.78408099 845 P0AEB7 yoaB RutC family protein YoaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 3 2 2 1 2 2 2 36.404 34.851 2;3 8.1117E-13 17110 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 217.47 217.47 5296300000 547110000 549270000 493670000 691600 915110 763740 469810000 462950000 540050000 695050 0 0 314440000 315150000 280770000 0 367080 0 450080000 440770000 428770000 0 0 0 2454 845 2371 48465;48466;48467;48468;48469;48470;48471;48472;48473;48474;48475;48476;48477;48478;48479;48480;48481;48482;48483;48484;48485;48486;48487;48488;48489;48490;48491;48492;48493;48494 29993;29994;29995;29996;29997;29998;29999;30000;30001;30002;30003;30004;30005;30006;30007;30008 29996 16 AWELINDIPGVSCVKPR Unmodified 1953.0142 0.014216861 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 1 1 2 2 1 2 2 2 1 46.178 44.684 2;3 1.5222E-06 21889 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.909 93.863 419200000 41534000 37282000 40094000 1160600 1658800 787680 30740000 30665000 34600000 2943400 2777200 0 35098000 38148000 0 0 1675000 0 36242000 39419000 44378000 0 0 0 2455 491 2372 48495;48496;48497;48498;48499;48500;48501;48502;48503;48504;48505;48506;48507;48508;48509;48510;48511;48512;48513;48514;48515;48516;48517;48518;48519;48520;48521;48522 30009;30010;30011;30012;30013;30014;30015;30016;30017;30018;30019;30020;30021 30016 12 AWFCGHEFYVDER Unmodified 1714.7198 0.71982575 1515 P39199 prmB 50S ribosomal protein L3 glutamine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 1 35.679 33.946 2;3 1.1256E-12 15517 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 213.34 213.34 1129600000 112300000 97503000 91906000 4925100 5010500 4348100 79107000 80193000 84192000 8603000 5602900 5873100 72963000 78242000 74470000 0 0 0 100110000 98901000 108320000 4830000 5891800 6311800 2456 1515 2373 48523;48524;48525;48526;48527;48528;48529;48530;48531;48532;48533;48534;48535;48536;48537;48538;48539;48540;48541;48542;48543;48544;48545;48546;48547;48548;48549;48550;48551;48552;48553;48554;48555;48556;48557;48558;48559 30022;30023;30024;30025;30026;30027;30028;30029;30030;30031;30032;30033;30034;30035;30036;30037;30038;30039;30040;30041;30042;30043 30043 21 AWGEVVVSK Unmodified 973.52328 0.52328142 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.917 23.919 2 0.0043014 8273 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 78.516 64.845 926280000 0 0 0 0 0 0 67454000 69521000 63712000 48556000 50935000 42084000 58480000 51436000 49985000 6998000 7344700 8275100 93896000 108810000 91588000 33719000 37385000 36107000 2457 1718 2374 48560;48561;48562;48563;48564;48565;48566;48567;48568;48569;48570;48571;48572;48573;48574;48575;48576;48577 30044;30045;30046;30047;30048;30049;30050;30051 30045 8 AWGLEPESR Unmodified 1043.5036 0.50360861 550 P0A9R4 fdx 2Fe-2S ferredoxin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.56 25.504 2 0.00019484 11364 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.02 120.57 1704200000 121620000 122510000 96010000 0 0 0 142870000 126750000 134780000 0 0 0 147540000 144930000 139990000 0 0 0 174650000 178490000 174050000 0 0 0 2458 550 2375 48578;48579;48580;48581;48582;48583;48584;48585;48586;48587;48588;48589 30052;30053;30054;30055;30056;30057;30058;30059;30060;30061;30062;30063 30059 12 AWGYAGDTPTTGIYR Unmodified 1627.7631 0.76307078 1473 P37595 iaaA Isoaspartyl peptidase;Isoaspartyl peptidase subunit alpha;Isoaspartyl peptidase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.143 33.686 2 6.976E-27 16508 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 228.98 226.56 196420000 20088000 15295000 15105000 0 0 0 28110000 20405000 19227000 0 0 0 11645000 10987000 10112000 0 0 0 13000000 15851000 16598000 0 0 0 2459 1473 2376 48590;48591;48592;48593;48594;48595;48596;48597;48598;48599;48600;48601 30064;30065;30066;30067;30068;30069;30070;30071;30072;30073;30074 30064 11 AWHSSSETIAK Unmodified 1215.5884 0.58840088 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 12.082 12.675 2;3 2.5502E-08 3487 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 204.91 197.34 38106000000 3647900000 3061600000 3066000000 33635000 9892900 7467300 4214800000 3841300000 3796200000 27556000 17754000 17869000 2680400000 2016600000 1645900000 18185000 12258000 10834000 3583200000 3306900000 3049400000 14284000 14166000 12349000 2460 827 2377 48602;48603;48604;48605;48606;48607;48608;48609;48610;48611;48612;48613;48614;48615;48616;48617;48618;48619;48620;48621;48622;48623;48624;48625;48626;48627;48628;48629;48630;48631;48632;48633;48634;48635;48636;48637;48638;48639;48640;48641;48642;48643;48644;48645;48646;48647 30075;30076;30077;30078;30079;30080;30081;30082;30083;30084;30085;30086;30087;30088;30089;30090;30091;30092;30093;30094;30095;30096;30097;30098;30099;30100;30101;30102;30103;30104;30105;30106;30107;30108 30091 33 AWIGVENPHR Unmodified 1177.5992 0.59924033 1159 P19636 eutC Ethanolamine ammonia-lyase light chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 19.068 19.666 3 0.13545 7511 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 25.437 19.695 73620000 7996500 7840200 6254800 0 0 0 0 8872100 5146300 0 0 0 5091500 4227300 3325300 0 0 0 7505800 8193200 9167100 0 0 0 2461 1159 2378 48648;48649;48650;48651;48652;48653;48654;48655;48656;48657;48658 30109 30109 1 AWILMDYASGK Unmodified 1253.6114 0.6114445 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.976 44.505 2 0.00012169 17800 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 115.71 112.98 188460000 0 15347000 0 4455800 4813000 3928200 16112000 24759000 22055000 20003000 18378000 15728000 0 0 0 4224500 2366000 4097700 15196000 0 0 6051900 5771800 5169200 2462 189 2379 48659;48660;48661;48662;48663;48664;48665;48666;48667;48668;48669;48670;48671;48672;48673;48674;48675;48676;48677;48678;48679;48680 30110;30111;30112;30113;30114;30115;30116;30117;30118;30119;30120;30121;30122;30123;30124;30125;30126;30127;30128;30129;30130 30115 16 AWIQYQGFK Unmodified 1139.5764 0.57637963 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.331 33.705 2 0.00034206 15987 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.19 108.08 1568900000 84145000 69121000 55943000 997380 0 575650 115220000 126360000 120570000 0 935640 0 136410000 141620000 139210000 0 0 0 196900000 185160000 192920000 1150800 882710 769910 2463 1283 2380 48681;48682;48683;48684;48685;48686;48687;48688;48689;48690;48691;48692;48693;48694;48695;48696;48697;48698 30131;30132;30133;30134;30135;30136;30137;30138;30139;30140;30141;30142 30136 9 AWLEEEMGIK Unmodified 1204.5798 0.57981002 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.266 38.601 2 0.00058416 18706 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.551 90.871 2073500000 121740000 116640000 106830000 0 0 0 205100000 213230000 205920000 0 0 0 179570000 190250000 158000000 0 0 0 190410000 202970000 182830000 0 0 0 2464 876 2381 48699;48700;48701;48702;48703;48704;48705;48706;48707;48708;48709;48710 30143;30144;30145;30146;30147;30148;30149;30150;30151;30152;30153;30154 30148 9 AWLEEEMGIKK Unmodified 1332.6748 0.67477304 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 29.858 28.51 3 0.00011781 13623 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 81.017 80.45 222050000 18373000 17922000 18857000 0 0 0 31163000 32051000 0 0 0 0 15535000 15749000 0 0 0 0 23019000 26203000 23183000 0 0 0 2465 876 2382 48711;48712;48713;48714;48715;48716;48717;48718;48719;48720;48721 30155;30156;30157;30158;30159;30160;30161;30162;30163;30164;30165 30156 11 AWLEHALPLIAEQLQGR Unmodified 1944.0581 0.058130587 331 P0A7C6 pepE Peptidase E yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 2 2 2 1 2 1 2 52.484 51.195 2;3 1.6055E-10 24965 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.38 130.11 728630000 19965000 16457000 0 0 0 0 112760000 107890000 104300000 0 0 0 81273000 59948000 0 0 0 0 99683000 19022000 107340000 0 0 0 2466 331 2383 48722;48723;48724;48725;48726;48727;48728;48729;48730;48731;48732;48733;48734;48735;48736;48737 30166;30167;30168;30169;30170;30171 30169 6 AWLEMEEPHWLK Unmodified 1567.7493 0.74933497 1911 P77522 sufB FeS cluster assembly protein SufB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.257 41.731 3 3.677E-05 19484 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 99.522 93.045 242870000 24602000 28000000 25328000 0 500810 0 23003000 28507000 29719000 0 0 0 10887000 13232000 9326900 0 0 0 16273000 17826000 15660000 0 0 0 2467 1911 2384 48738;48739;48740;48741;48742;48743;48744;48745;48746;48747;48748;48749;48750 30172;30173;30174;30175;30176;30177;30178;30179;30180;30181;30182;30183 30182 12 AWLSGLSPK Unmodified 957.52837 0.5283668 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 33.181 31.872 2 0.0051428 14990 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 83.206 78.85 55037000 6663500 7627300 7391700 0 0 0 0 0 0 0 0 0 0 8383200 4555000 0 0 0 5650600 7912200 6853400 0 0 0 2468 1399 2385 48751;48752;48753;48754;48755;48756;48757;48758 30184;30185;30186;30187 30187 1 AWNHFGITPPEMP Unmodified 1495.6918 0.69182009 387 P0A812 ruvB Holliday junction ATP-dependent DNA helicase RuvB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.368 44.886 2 0.00074609 21958 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.985 68.013 60286000 7230700 7107300 7370600 0 0 0 4166200 3989900 4131100 0 0 0 3646100 2171000 3465300 0 0 0 5445600 6128600 5433700 0 0 0 2469 387 2386 48759;48760;48761;48762;48763;48764;48765;48766;48767;48768;48769;48770 30188;30189 30188 1 AWNIKPEQQVSFYCGTGWR Unmodified 2326.0953 0.095320729 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 40.151 38.467 3 6.28E-07 19015 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 100.67 93.098 365660000 0 4025100 4140400 0 0 0 39233000 45464000 52261000 0 0 0 49121000 53819000 35098000 0 0 0 27455000 28441000 26605000 0 0 0 2470 1947 2387 48771;48772;48773;48774;48775;48776;48777;48778;48779;48780;48781 30190;30191;30192;30193;30194;30195 30191 6 AWNQPGNNGQDRDPWGSSKPGGNSEGNGNK Unmodified 3124.3732 0.37316316 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 17.505 17.771 4 0.0012059 5241 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 54.259 54.259 36627000 0 0 0 3774100 3078200 3101400 0 0 0 6166900 4919900 5376600 0 0 0 0 0 0 0 0 0 3597100 3522600 3090100 2471 649 2388 48782;48783;48784;48785;48786;48787;48788;48789;48790 30196;30197;30198;30199;30200;30201 30198 6 AWPMTLR Unmodified 873.45309 0.45309337 1405 P33018 yeiG S-formylglutathione hydrolase YeiG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 33.942 32.552 2 0.018172 15483 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.994 78.994 63311000 16037000 18044000 13707000 0 0 0 0 3555600 0 0 0 0 2755200 0 0 0 0 0 4241300 0 4970900 0 0 0 2472 1405 2389 48791;48792;48793;48794;48795;48796;48797 30202;30203;30204 30203 3 AWPTPDGR Unmodified 898.42972 0.42971539 407 P0A884 thyA Thymidylate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.054 20.485 2 0.005035 7665 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 87.284 82.885 506240000 38770000 35077000 36883000 0 0 0 37217000 34662000 35262000 0 0 0 40560000 38846000 34875000 0 0 0 62683000 58829000 52573000 0 0 0 2473 407 2390 48798;48799;48800;48801;48802;48803;48804;48805;48806;48807;48808;48809 30205;30206;30207;30208;30209;30210;30211;30212;30213;30214;30215;30216 30214 12 AWQCGTVQLDFSLPSR Unmodified 1863.8938 0.89376737 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 49.029 47.63 2;3 1.9181E-18 23187 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 236.11 217.54 704770000 23285000 7792700 8937400 0 0 0 90601000 89724000 89366000 2062100 2109800 3169800 57499000 54216000 49955000 0 0 0 77958000 77678000 70419000 0 0 0 2474 445 2391 48810;48811;48812;48813;48814;48815;48816;48817;48818;48819;48820;48821;48822;48823;48824;48825;48826;48827;48828;48829;48830;48831;48832;48833;48834 30217;30218;30219;30220;30221;30222;30223;30224;30225;30226;30227;30228;30229;30230;30231;30232;30233;30234;30235;30236;30237;30238;30239 30227 19 AWQEIEQADR Unmodified 1244.5786 0.57856447 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.662 22.133 2 0.00062474 9693 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.906 83.685 300280000 25810000 23686000 26910000 0 0 0 26590000 26347000 22815000 0 0 0 21948000 21779000 26665000 0 0 0 24362000 27078000 26291000 0 0 0 2475 1256 2392 48835;48836;48837;48838;48839;48840;48841;48842;48843;48844;48845;48846 30240;30241;30242;30243 30240 4 AWQPGGAGTDFLTEAHLDLPMEFESIGK Unmodified 3016.4277 0.42767306 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.509 53.093 3 1.7727E-07 26040 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 94.721 92.271 663030000 38706000 36322000 34027000 15526000 13655000 19651000 33859000 31942000 26671000 0 0 0 57726000 44143000 52735000 0 0 0 80709000 67957000 59954000 17349000 15994000 16099000 2476 1383 2393 48847;48848;48849;48850;48851;48852;48853;48854;48855;48856;48857;48858;48859;48860;48861;48862;48863;48864 30244;30245;30246;30247;30248;30249;30250;30251;30252;30253;30254;30255 30247 12 AWSNWAR Unmodified 889.41949 0.41948505 1922 P77625 yfbT Sugar phosphatase YfbT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 23.779 22.989 2 0.013921 10058 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.287 76.377 78927000 6829800 4960200 5036000 0 0 0 10062000 9160800 0 0 0 0 7928600 5410300 5888100 0 0 0 7370000 8892400 7388800 0 0 0 2477 1922 2394 48865;48866;48867;48868;48869;48870;48871;48872;48873;48874;48875 30256 30256 1 AWTIPVGATAPQAAGK Unmodified 1537.8253 0.8252771 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 36.281 34.724 2;3 2.2893E-08 16709 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.67 113.72 1615900000 172780000 161560000 167050000 0 0 0 69096000 71257000 81936000 0 0 0 143200000 136600000 106320000 0 0 0 174840000 170680000 160580000 0 0 0 2478 680 2395 48876;48877;48878;48879;48880;48881;48882;48883;48884;48885;48886;48887;48888;48889;48890;48891;48892;48893;48894;48895;48896;48897;48898;48899 30257;30258;30259;30260;30261;30262;30263;30264;30265;30266;30267;30268;30269;30270;30271 30262 12 AWTTLGCK Unmodified 935.45349 0.4534873 171 P07862 ddlB D-alanine--D-alanine ligase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.097 21.445 2 0.016512 8556 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 68.422 58.007 261360000 27004000 21935000 17239000 0 0 0 18941000 22812000 18746000 0 0 0 20524000 17026000 18158000 0 0 0 30462000 25327000 23187000 0 0 0 2479 171 2396 48900;48901;48902;48903;48904;48905;48906;48907;48908;48909;48910;48911 30272;30273;30274;30275;30276;30277;30278;30279 30275 7 AWVEEHVGFVDSAVDR Unmodified 1814.8588 0.85876208 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.529 33.972 2 4.6633E-39 16553 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 251.3 242.79 391380000 26700000 18281000 26034000 0 0 0 58504000 58435000 52556000 0 0 0 23764000 26619000 28398000 0 0 0 24525000 23716000 23853000 0 0 0 2480 214 2397 48912;48913;48914;48915;48916;48917;48918;48919;48920;48921;48922;48923 30280;30281;30282;30283;30284;30285;30286;30287;30288;30289;30290;30291 30282 12 AWVPVTQVPNCWLLVDGVNKPK Unmodified 2519.3359 0.33588535 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 50.645 49.303 3;4 0.00017704 23978 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 69.922 66.395 3433100000 362710000 348650000 309620000 0 0 2733600 289300000 337510000 285270000 0 0 0 235890000 219630000 202540000 0 0 0 276960000 294300000 266230000 0 1761000 0 2481 1170 2398 48924;48925;48926;48927;48928;48929;48930;48931;48932;48933;48934;48935;48936;48937;48938;48939;48940;48941;48942;48943;48944;48945;48946;48947;48948;48949 30292;30293;30294;30295;30296;30297;30298;30299;30300;30301;30302;30303;30304 30296 13 AWYQDEGYTVDTIQAVLAR Unmodified 2198.0644 0.064397756 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 54.272 52.829 2;3 3.1151E-45 25884 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 322.81 320.67 1568900000 139640000 135430000 149290000 969520 0 1757200 100130000 102970000 96023000 4632500 0 0 116780000 108560000 117210000 0 0 0 177400000 150680000 167440000 0 0 0 2482 62 2399 48950;48951;48952;48953;48954;48955;48956;48957;48958;48959;48960;48961;48962;48963;48964;48965;48966;48967;48968;48969;48970;48971;48972;48973;48974;48975;48976 30305;30306;30307;30308;30309;30310;30311;30312;30313;30314;30315;30316;30317;30318;30319;30320;30321;30322;30323;30324;30325;30326 30311 22 AYADDKAIVGGIAR Unmodified 1418.7518 0.75177781 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 22.511 21.983 3 0.12639 7518 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 25.978 23.111 80016000 0 0 0 0 3403800 0 9374500 8573600 11144000 3444200 3160500 6158900 4481300 0 5337500 0 0 0 3995800 0 0 5553300 7672300 7716600 2483 651 2400 48977;48978;48979;48980;48981;48982;48983;48984;48985;48986;48987;48988;48989 30327;30328 30328 2 AYADLITIAGYDGGTGASPLSSVK Unmodified 2326.1693 0.16925676 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 51.539 50.292 2;3 7.2641E-23 24411 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 234.21 223.56 413880000 82400000 72817000 61361000 0 0 0 27025000 26332000 31790000 0 0 0 19652000 16075000 17760000 0 0 0 21787000 19635000 17244000 0 0 0 2484 218 2401 48990;48991;48992;48993;48994;48995;48996;48997;48998;48999;49000;49001;49002;49003;49004;49005;49006;49007;49008;49009;49010;49011;49012;49013 30329;30330;30331;30332;30333;30334;30335;30336;30337;30338 30337 10 AYADTVER Unmodified 923.43486 0.43486035 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.48 13.122 2 0.00040535 3026 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 140.98 137.59 1804100000 146120000 140030000 150810000 18439000 16341000 14090000 132190000 115170000 128030000 40564000 35230000 35321000 143050000 121150000 119650000 0 6819000 8598400 131400000 133920000 126970000 14141000 11644000 14394000 2485 899 2402 49014;49015;49016;49017;49018;49019;49020;49021;49022;49023;49024;49025;49026;49027;49028;49029;49030;49031;49032;49033;49034;49035;49036;49037 30339;30340;30341;30342;30343;30344;30345;30346;30347;30348;30349;30350;30351;30352;30353;30354;30355;30356;30357;30358;30359 30349 20 AYAEIWLDQEK Unmodified 1364.6612 0.66123147 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.744 36.223 2 1.6667E-05 17879 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.96 135.63 635470000 0 138130000 0 1928800 2074700 0 104460000 97472000 109750000 0 0 0 4219600 3816000 3035000 3456000 0 1472900 0 0 159790000 2585600 3271800 0 2486 1143 2403 49038;49039;49040;49041;49042;49043;49044;49045;49046;49047;49048;49049;49050;49051 30360;30361;30362;30363 30361 3 AYAGEASQHLDAALAR Unmodified 1642.8063 0.80633258 1431 P33650 feoB Ferrous iron transport protein B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 22.523 21.985 3 6.8562E-05 9436 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.81 78.184 68971000 0 4653400 0 0 0 0 0 7177700 5720500 0 0 0 7724600 4682500 6833000 0 0 0 8434500 11155000 12589000 0 0 0 2487 1431 2404 49052;49053;49054;49055;49056;49057;49058;49059;49060 30364;30365 30364 2 AYALMTDIHWDDCFCR Unmodified 2072.8543 0.8542871 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 46.801 45.467 3 9.4809E-08 22009 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.3 111.3 65313000 19848000 23426000 14381000 0 0 0 0 0 2228200 0 0 0 0 0 0 0 0 0 0 0 5429900 0 0 0 2488 1112 2405 49061;49062;49063;49064;49065 30366;30367;30368;30369 30369 3 AYALQDQGYDTVEANHQLGFAADER Unmodified 2781.2631 0.26305058 347 P0A7I7 ribA GTP cyclohydrolase-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.094 34.537 3 1.7766E-60 15946 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 255.39 254.49 733640000 63488000 60610000 56597000 0 0 0 59480000 50946000 51555000 0 0 0 59526000 64155000 58059000 0 0 0 60926000 70418000 77878000 0 0 0 2489 347 2406 49066;49067;49068;49069;49070;49071;49072;49073;49074;49075;49076;49077 30370;30371;30372;30373;30374;30375;30376;30377;30378;30379;30380;30381 30380 12 AYALSEQLK Unmodified 1021.5444 0.5444108 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.702 22.173 2 0.028434 9814 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 60.478 50.961 234500000 48489000 45938000 42291000 0 0 0 17698000 18012000 17873000 0 0 0 8954600 6359400 5986500 0 0 0 8973200 6461300 7461200 0 0 0 2490 119 2407 49078;49079;49080;49081;49082;49083;49084;49085;49086;49087;49088;49089 30382 30382 1 AYALSIDLLVER Unmodified 1361.7555 0.7554662 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.831 50.583 2 3.4744E-05 23817 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 135.55 102.29 322240000 22795000 24039000 18327000 0 0 0 30694000 21347000 22457000 0 0 0 31583000 23203000 23829000 0 0 0 36507000 35039000 32422000 0 0 0 2491 1736 2408 49090;49091;49092;49093;49094;49095;49096;49097;49098;49099;49100;49101 30383;30384;30385;30386;30387;30388;30389;30390;30391;30392;30393 30391 4 AYASLATSADK Unmodified 1096.5401 0.5400537 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.891 16.707 2 0.00035077 5753 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.08 70.274 144610000 25606000 20246000 19171000 0 0 0 9736800 8304100 9431800 0 0 0 8448500 4970500 5548000 0 0 0 11349000 10846000 10952000 0 0 0 2492 118 2409 49102;49103;49104;49105;49106;49107;49108;49109;49110;49111;49112;49113 30394;30395;30396;30397;30398;30399;30400 30398 7 AYCAQVIAR Unmodified 1050.528 0.52804923 81 P03813 ygeA Uncharacterized protein YgeA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.372 18.054 2 0.0041242 6572 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.146 73.798 176690000 19383000 19424000 12794000 0 0 0 20895000 20793000 15744000 0 0 0 11118000 9793800 9416300 0 0 0 14154000 11085000 12087000 0 0 0 2493 81 2410 49114;49115;49116;49117;49118;49119;49120;49121;49122;49123;49124;49125 30401;30402;30403;30404;30405;30406 30403 4 AYDAYSFHVLPR Unmodified 1437.7041 0.70409934 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 2 2 2 2 1 33.217 31.654 2;3 1.0466E-08 15008 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 174.86 167.22 1298000000 72282000 75490000 67462000 18730000 20973000 18685000 130880000 114250000 121040000 38490000 28551000 33691000 68090000 69088000 15213000 4447400 3863300 3151600 117280000 114790000 113480000 17548000 18256000 12281000 2494 408 2411 49126;49127;49128;49129;49130;49131;49132;49133;49134;49135;49136;49137;49138;49139;49140;49141;49142;49143;49144;49145;49146;49147;49148;49149;49150;49151;49152;49153;49154;49155;49156;49157;49158;49159;49160;49161;49162;49163;49164;49165;49166;49167;49168 30407;30408;30409;30410;30411;30412;30413;30414;30415;30416;30417;30418;30419;30420;30421;30422;30423;30424;30425;30426;30427;30428;30429;30430;30431;30432;30433;30434;30435;30436;30437;30438;30439;30440;30441 30427 35 AYDGEIFYHR Unmodified 1269.5778 0.57783619 1683 P64534 rcnB Nickel/cobalt homeostasis protein RcnB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 2 1 1 23.954 23.068 2 1.3678E-08 10061 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 176.75 153.32 270580000 33210000 35690000 23210000 0 0 0 21138000 18923000 21255000 0 0 0 20630000 19931000 19461000 0 0 0 32050000 25084000 0 0 0 0 2495 1683 2412 49169;49170;49171;49172;49173;49174;49175;49176;49177;49178;49179;49180;49181;49182 30442;30443;30444;30445;30446;30447;30448;30449;30450;30451 30445 9 AYDINLTDLLEEEIDPALGNGGLGR Unmodified 2657.3184 0.31844019 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 55.728 54.197 3 8.2442E-05 21977 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 77.543 74.378 103150000 0 0 0 0 0 0 11129000 6380400 3299100 19460000 14444000 18764000 0 0 0 0 0 0 18344000 11327000 0 0 0 0 2496 30 2413 49183;49184;49185;49186;49187;49188;49189;49190 30452 30452 1 AYDLGADVR Unmodified 978.47706 0.47705951 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 3 2 1 1 1 1 1 22.686 22.223 2 8.9344E-06 7117 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 168.23 123.54 45891000000 330830000 499700000 333810000 21476000 23126000 20370000 258660000 252390000 264630000 2394200000 2530500000 2459500000 341150000 331320000 0 8425600000 8450800000 7988900000 427540000 418040000 457190000 3307200000 3166500000 3187100000 2497 463 2414 49191;49192;49193;49194;49195;49196;49197;49198;49199;49200;49201;49202;49203;49204;49205;49206;49207;49208;49209;49210;49211;49212;49213;49214;49215;49216;49217;49218;49219 30453;30454;30455;30456;30457;30458;30459;30460;30461;30462;30463;30464;30465;30466;30467;30468;30469;30470;30471;30472;30473;30474;30475;30476;30477;30478;30479;30480;30481;30482;30483;30484;30485;30486;30487;30488 30476 34 AYDLLTLAQGEFQADTAVAGLQAAYAR Unmodified 2826.4188 0.41882294 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.378 53.905 3 4.8397E-41 26789 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 208.46 206.69 730790000 38627000 30479000 30702000 0 0 0 75337000 77177000 58335000 0 0 0 75616000 69711000 82780000 0 0 0 60321000 69392000 62309000 0 0 0 2498 1487 2415 49220;49221;49222;49223;49224;49225;49226;49227;49228;49229;49230;49231 30489;30490;30491;30492 30489 4 AYDQVLHDVAIQK Unmodified 1498.778 0.77799256 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 28.506 27.177 2;3 1.3841E-07 12416 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 181.66 175.36 767260000 74528000 62579000 16203000 9902800 10642000 9141900 35935000 55226000 37460000 23891000 21439000 23624000 41062000 28524000 46784000 0 4309700 4445000 75030000 66757000 69022000 17308000 15527000 17924000 2499 1909 2416 49232;49233;49234;49235;49236;49237;49238;49239;49240;49241;49242;49243;49244;49245;49246;49247;49248;49249;49250;49251;49252;49253;49254;49255;49256;49257;49258;49259;49260;49261;49262;49263;49264;49265;49266;49267;49268;49269;49270;49271;49272;49273;49274;49275;49276 30493;30494;30495;30496;30497;30498;30499;30500;30501;30502;30503;30504;30505;30506;30507;30508;30509;30510;30511;30512;30513;30514;30515;30516;30517;30518;30519;30520;30521;30522;30523;30524;30525;30526 30511 34 AYDTGWGGVVFK Unmodified 1298.6295 0.62953741 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 42.181 40.051 2 2.3331E-05 19815 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.12 119.81 186070000 0 0 0 0 0 0 67607000 0 67835000 2518800 2350800 2660000 0 22351000 20750000 0 0 0 0 0 0 0 0 0 2500 1276 2417 49277;49278;49279;49280;49281;49282;49283 30527;30528;30529;30530 30528 4 AYEAYDFHEVVQR Unmodified 1625.7474 0.74742071 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 3 2 2 2 2 28.388 27.077 2;3 3.9311E-31 12743 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 250.72 247.5 3761500000 411490000 341630000 352200000 1124000 0 0 304890000 249460000 241550000 0 4219300 0 220830000 216510000 222710000 0 0 0 377310000 452870000 364750000 0 0 0 2501 58 2418 49284;49285;49286;49287;49288;49289;49290;49291;49292;49293;49294;49295;49296;49297;49298;49299;49300;49301;49302;49303;49304;49305;49306;49307;49308;49309;49310;49311 30531;30532;30533;30534;30535;30536;30537;30538;30539;30540;30541;30542;30543;30544;30545;30546;30547;30548;30549;30550;30551;30552;30553;30554;30555 30534 25 AYEDAETVTGVINGK Unmodified 1565.7573 0.7573167 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 2 1 1 1 1 1 2 2 2 1 1 2 1 30.551 29.18 2;3 5.9016E-27 10363 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 232 222.57 891140000 161110000 0 146370000 23735000 24493000 28478000 66405000 0 57114000 40764000 5396600 5743500 65774000 66276000 54522000 46061000 22077000 33045000 0 0 0 5673400 32684000 5418100 2502 990 2419 49312;49313;49314;49315;49316;49317;49318;49319;49320;49321;49322;49323;49324;49325;49326;49327;49328;49329;49330;49331;49332;49333;49334;49335;49336;49337;49338;49339;49340 30556;30557;30558;30559;30560;30561;30562;30563;30564;30565;30566;30567;30568;30569;30570 30556 15 AYELNVFSFFHLSQLVAPEMEK Unmodified 2598.2828 0.28284673 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.423 53.944 3 0.0020635 26915 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.457 55.844 213560000 42961000 37734000 41080000 0 0 0 32688000 23742000 26081000 0 0 0 2607000 0 2877200 0 0 0 0 3787400 0 0 0 0 2503 886 2420 49341;49342;49343;49344;49345;49346;49347;49348;49349 30571;30572 30571 2 AYELYLSEK Unmodified 1114.5546 0.55464113 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 29.337 28.081 2 0.00061972 12956 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.57 71.166 138190000 0 69175000 60622000 0 0 0 4302300 0 0 0 0 0 0 0 0 0 0 0 0 0 4091800 0 0 0 2504 1822 2421 49350;49351;49352;49353;49354 30573;30574 30574 2 AYENSFSGNQDVMVMSPDSDFFR Unmodified 2642.1054 0.10535265 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.82 50.491 3 4.9223E-10 20488 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 118.32 118.21 101970000 0 0 0 4588600 4535700 4080900 4983200 6338500 0 5441100 4116400 6923700 9141900 6949100 6608700 0 0 0 8397600 10985000 6965700 3961100 3190900 4766400 2505 648 2422 49355;49356;49357;49358;49359;49360;49361;49362;49363;49364;49365;49366;49367;49368;49369;49370;49371 30575;30576;30577;30578;30579;30580 30575 6 AYEPFIELLR Unmodified 1249.6707 0.67067394 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 52.17 50.785 2 0.00056041 20326 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 95.099 88.039 92595000 0 0 0 0 399350 0 9859700 10210000 10451000 4224100 2988000 3826900 0 0 0 0 0 0 15766000 15482000 13827000 1780200 2169800 1611900 2506 1116 2423 49372;49373;49374;49375;49376;49377;49378;49379;49380;49381;49382;49383;49384 30581;30582;30583;30584 30582 3 AYFFSYDSVAQAR Unmodified 1523.7045 0.70449327 132 P06864 ebgA Evolved beta-galactosidase subunit alpha yes yes 0 0 0 By matching By MS/MS 1 1 41.094 39.264 2 0.12747 18340 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 39.918 33.385 3799700 0 0 0 0 0 0 2424000 0 0 0 0 0 0 1375700 0 0 0 0 0 0 0 0 0 0 2507 132 2424 49385;49386 30585 30585 0 AYFLDFDER Unmodified 1174.5295 0.52948901 1035 P0C077 relE mRNA interferase RelE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 43.07 41.566 2 0.11227 14891 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 41.429 41.429 105770000 0 0 0 0 0 0 0 0 0 11786000 12095000 12671000 0 0 0 11873000 9762700 9624400 0 0 0 13232000 12986000 11743000 2508 1035 2425 49387;49388;49389;49390;49391;49392;49393;49394;49395 30586;30587;30588 30586 3 AYFTGAPTR Unmodified 982.48723 0.48723027 476 P0A901 blc Outer membrane lipoprotein Blc yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.272 19.654 2 0.12164 7650 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 44.753 27.789 144510000 6572000 4771600 0 0 0 4721000 22794000 17063000 21146000 7899100 7338600 7177900 4783300 5758400 5762900 0 0 0 10799000 8155100 6884000 0 2886400 0 2509 476 2426 49396;49397;49398;49399;49400;49401;49402;49403;49404;49405;49406;49407;49408;49409;49410;49411 30589 30589 0 AYGAELILVTK Unmodified 1176.6754 0.67542497 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.714 37.04 2 0.0014926 18057 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 79.148 70.993 275570000 20431000 13596000 14330000 0 0 0 23948000 20858000 18349000 0 0 0 24567000 25646000 27743000 0 0 0 29311000 32302000 24489000 0 0 0 2510 1133 2427 49412;49413;49414;49415;49416;49417;49418;49419;49420;49421;49422;49423 30590;30591;30592;30593;30594;30595 30592 4 AYGCELLVHK Unmodified 1188.5961 0.59612879 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 2 2 2 2 3 2 2 2 2 2 2 3 1 1 20.335 20.692 2;3 0.00042297 8216 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 104.06 88.906 2593500000 192510000 129910000 160600000 3185600 2924100 2964000 192020000 192080000 184440000 0 0 0 187600000 183030000 165230000 0 0 0 350360000 315370000 329040000 1349800 877130 0 2511 1169 2428 49424;49425;49426;49427;49428;49429;49430;49431;49432;49433;49434;49435;49436;49437;49438;49439;49440;49441;49442;49443;49444;49445;49446;49447;49448;49449;49450;49451;49452;49453;49454;49455;49456 30596;30597;30598;30599;30600;30601;30602;30603;30604;30605;30606;30607;30608;30609;30610;30611;30612;30613;30614;30615 30602 20 AYGLFSEESELAQTLR Unmodified 1812.8894 0.8893935 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 50.075 48.65 2;3 6.8359E-24 24173 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 213.16 206.27 804800000 42526000 35604000 32671000 0 0 0 43236000 36788000 40264000 3246300 3025700 3062300 47839000 43326000 44162000 0 0 0 63511000 57472000 57298000 86180000 88262000 76325000 2512 1433 2429 49457;49458;49459;49460;49461;49462;49463;49464;49465;49466;49467;49468;49469;49470;49471;49472;49473;49474;49475;49476;49477;49478;49479;49480;49481;49482;49483;49484;49485;49486 30616;30617;30618;30619;30620;30621;30622;30623;30624;30625;30626;30627;30628 30617 13 AYGQFEPPALYDHVVK Unmodified 1832.9097 0.90973501 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 1 2 2 2 1 1 36.181 34.671 2;3 3.9938E-07 17056 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 131.17 125.68 1393600000 123810000 114390000 97006000 0 0 0 107430000 117640000 123360000 0 0 0 101380000 100470000 85972000 0 785340 0 128940000 142670000 146650000 1973600 0 1145300 2513 29 2430 49487;49488;49489;49490;49491;49492;49493;49494;49495;49496;49497;49498;49499;49500;49501;49502;49503;49504;49505;49506;49507;49508;49509;49510;49511;49512 30629;30630;30631;30632;30633;30634;30635;30636;30637;30638;30639;30640;30641;30642;30643;30644;30645;30646;30647 30631 19 AYGSTNPINVVR Unmodified 1289.6728 0.67279921 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.398 24.342 2 4.0958E-14 11128 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.57 148.36 5159400000 0 0 0 42673000 47103000 41217000 0 386150000 413830000 110390000 111760000 108700000 515570000 479610000 457020000 69126000 39150000 44228000 713900000 729680000 662840000 55540000 62684000 68257000 2514 376 2431 49513;49514;49515;49516;49517;49518;49519;49520;49521;49522;49523;49524;49525;49526;49527;49528;49529;49530;49531;49532;49533;49534;49535;49536 30648;30649;30650;30651;30652;30653;30654;30655;30656;30657;30658;30659;30660;30661;30662;30663;30664;30665;30666;30667;30668;30669;30670;30671 30654 24 AYGVLANVFINR Unmodified 1335.7299 0.72992016 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.77 44.306 2 3.6577E-08 21974 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 198.07 179.85 213030000 18608000 18651000 17308000 0 0 0 21267000 19128000 17127000 0 0 0 23272000 14458000 15496000 0 0 0 15139000 14843000 17739000 0 0 0 2515 1246 2432 49537;49538;49539;49540;49541;49542;49543;49544;49545;49546;49547;49548 30672 30672 1 AYHAFPPLTNSAGEPTGAMYGVLNMLR Unmodified 2877.3942 0.39420487 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 53.535 52.15 3 2.3945E-07 25453 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.72 88.493 133510000 27833000 22059000 23632000 0 0 0 0 0 0 0 0 0 0 25414000 0 0 0 0 0 0 34576000 0 0 0 2516 37 2433 49549;49550;49551;49552;49553 30673 30673 1 AYHVVDEAELTK Unmodified 1373.6827 0.68269519 1022 P0AGJ5 yfiF Uncharacterized tRNA/rRNA methyltransferase YfiF yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 19.82 20.419 2 4.9223E-06 7931 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.81 114.49 21624000 5823600 7530800 8269500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2517 1022 2434 49554;49555;49556 30674;30675 30674 2 AYIDYVGSWGPMVLGHNHPAIR Unmodified 2452.211 0.21101919 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 2 1 44.129 42.577 3;4 8.4242E-22 20713 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.68 157.35 1846200000 114160000 157470000 138870000 3674900 5010300 0 151650000 134680000 120150000 33465000 43052000 39687000 131950000 103730000 108460000 16568000 17801000 19748000 158910000 159770000 141130000 15878000 17853000 12505000 2518 1227 2435 49557;49558;49559;49560;49561;49562;49563;49564;49565;49566;49567;49568;49569;49570;49571;49572;49573;49574;49575;49576;49577;49578;49579;49580;49581;49582;49583;49584;49585;49586;49587;49588;49589;49590;49591;49592;49593;49594 30676;30677;30678;30679;30680;30681;30682;30683;30684;30685;30686;30687;30688;30689;30690;30691;30692;30693 30689 16 AYILEAEGIR Unmodified 1133.6081 0.60807369 576 P0AA53 qmcA Protein QmcA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.559 31.254 2 0.00024905 15109 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 105.57 94.346 136350000 6389800 4976900 5208300 1749800 1967500 1714300 19304000 0 17915000 7702600 0 6627300 10526000 10018000 9236500 1018600 751110 757970 7813100 9112000 9729900 0 2037400 1793000 2519 576 2436 49595;49596;49597;49598;49599;49600;49601;49602;49603;49604;49605;49606;49607;49608;49609;49610;49611;49612;49613;49614;49615;49616 30694;30695;30696;30697;30698 30695 4 AYIVSQGHLIAHGTPTEILQDEHVK Unmodified 2755.4293 0.42932804 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.277 28.716 4 0.0015022 13302 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 58.92 58.381 187370000 10521000 9982000 11163000 0 0 0 19422000 17450000 19916000 3115800 3080800 2515700 10283000 14079000 11735000 0 0 0 19786000 20419000 13901000 0 0 0 2520 559 2437 49617;49618;49619;49620;49621;49622;49623;49624;49625;49626;49627;49628;49629;49630;49631 30699;30700;30701;30702;30703 30701 5 AYIVSQGHLIAHGTPTEILQDEHVKR Unmodified 2911.5304 0.53043907 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.784 25.535 5 0.0011816 9742 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 58.418 56.202 94206000 0 0 0 0 0 6348200 0 7255000 0 18435000 15774000 13860000 3838100 0 0 0 3159000 2887600 0 5669100 0 5343700 4145500 7491000 2521 559 2438 49632;49633;49634;49635;49636;49637;49638;49639;49640;49641;49642;49643 30704 30704 1 AYLATQGVEIR Unmodified 1219.6561 0.65608651 1627 P60664 hisF Imidazole glycerol phosphate synthase subunit HisF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 27.665 26.519 2 2.8113E-05 11920 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 133.57 124.71 221820000 24525000 27207000 25890000 0 0 0 23888000 18477000 20899000 0 0 0 21424000 20752000 16530000 0 0 0 0 22230000 0 0 0 0 2522 1627 2439 49644;49645;49646;49647;49648;49649;49650;49651;49652;49653 30705;30706;30707;30708;30709;30710;30711;30712;30713;30714 30711 10 AYLNEYLR Unmodified 1040.5291 0.52909508 611 P0AAT4 ybdG Miniconductance mechanosensitive channel YbdG yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.4 28.76 2 0.0021725 12858 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 102.71 84.678 67362000 3318800 0 0 0 0 0 6659400 4379100 4507000 2052900 2328700 1906500 6027500 7914500 7159100 0 0 0 5439800 6926800 6875900 0 1866500 0 2523 611 2440 49654;49655;49656;49657;49658;49659;49660;49661;49662;49663;49664;49665;49666;49667 30715;30716 30716 2 AYNTVVPASGK Unmodified 1105.5768 0.57677356 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.801 16.373 2 1.9753E-05 4690 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 136.63 126.85 908120000 118120000 107670000 88470000 12041000 11180000 9340000 57949000 58326000 54697000 56207000 50397000 53464000 33451000 26029000 26209000 0 2913100 2834600 44138000 37823000 38461000 6354400 6861300 5177000 2524 982 2441 49668;49669;49670;49671;49672;49673;49674;49675;49676;49677;49678;49679;49680;49681;49682;49683;49684;49685;49686;49687;49688;49689;49690;49691 30717;30718;30719;30720;30721;30722;30723;30724;30725;30726;30727;30728;30729;30730;30731;30732;30733;30734;30735;30736;30737;30738;30739;30740 30720 24 AYPEQSMAVAATHDLPTLR Unmodified 2070.0204 0.020424451 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 37.056 36.107 3 0.023339 16862 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 45.916 42.422 35855000 0 7736100 5723600 0 0 0 0 0 0 0 0 0 8711200 0 7172300 3572200 0 2939700 0 0 0 0 0 0 2525 1116 2442 49692;49693;49694;49695;49696;49697 30741 30741 1 AYPGLVNVPR Unmodified 1084.6029 0.60292873 1368 P31455 yidR Uncharacterized protein YidR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 29.532 28.326 2 0.0027148 12511 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 77.282 63.125 159270000 14251000 12443000 13760000 0 0 0 0 18029000 27088000 0 0 0 9770000 13749000 9744900 0 0 0 14275000 14425000 11730000 0 0 0 2526 1368 2443 49698;49699;49700;49701;49702;49703;49704;49705;49706;49707;49708 30742;30743;30744;30745;30746;30747;30748 30748 7 AYPQEAAEFTR Unmodified 1281.599 0.59896556 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.099 23.215 2 2.8908E-07 9641 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 159.58 153.28 7139600000 372060000 368280000 392670000 1703900 1394200 1831600 733600000 780030000 741000000 0 1645600 1354600 606760000 554110000 568100000 1195000 549870 0 654970000 699590000 654230000 1384700 1821200 1301600 2527 1299 2444 49709;49710;49711;49712;49713;49714;49715;49716;49717;49718;49719;49720;49721;49722;49723;49724;49725;49726;49727;49728;49729;49730 30749;30750;30751;30752;30753;30754;30755;30756;30757;30758;30759;30760 30760 12 AYQSQDIIR Unmodified 1092.5564 0.55637247 599 P0AAJ5 fdoH Formate dehydrogenase-O iron-sulfur subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 18.576 18.78 2 0.0024586 5666 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 85.064 40.617 17533000 0 0 0 2708600 2463300 3063200 0 0 0 1892600 3993800 3411400 0 0 0 0 0 0 0 0 0 0 0 0 2528 599 2445 49731;49732;49733;49734;49735;49736 30761;30762 30762 2 AYREEAIIK Unmodified 1091.5975 0.597509 397 P0A853 tnaA Tryptophanase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 13.837 14.588 2;3 2.831E-05 4245 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 166.3 132.5 17332000000 2227800000 3186500000 2621300000 38179000 32507000 35193000 1645300000 1637300000 1550600000 5637300 4609000 4700500 852130000 793740000 361900000 3971000 0 0 785690000 753190000 770100000 8858700 6584200 5866400 2529 397 2446 49737;49738;49739;49740;49741;49742;49743;49744;49745;49746;49747;49748;49749;49750;49751;49752;49753;49754;49755;49756;49757;49758;49759;49760;49761;49762;49763;49764;49765;49766;49767;49768;49769;49770;49771;49772;49773;49774 30763;30764;30765;30766;30767;30768;30769;30770;30771;30772;30773;30774;30775;30776;30777;30778;30779;30780;30781;30782;30783;30784;30785;30786;30787;30788;30789;30790;30791 30790 29 AYRPGDVLTTMSGQTVEVLNTDAEGR Unmodified 2779.3447 0.34467172 1725 P68767 pepA Cytosol aminopeptidase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 44.608 43.166 3 4.7411E-07 21047 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.23 96.328 104440000 20868000 21004000 19739000 0 0 0 5821300 0 0 0 0 0 0 2877000 4148500 0 0 0 10183000 11723000 8074000 0 0 0 2530 1725 2447 49775;49776;49777;49778;49779;49780;49781;49782;49783 30792 30792 1 AYSDLDAIIAPDANALPAAAQAAENLK Unmodified 2696.3657 0.36572473 1821 P76142 lsrB Autoinducer 2-binding protein LsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.181 52.775 3 0.00070768 25985 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.51 59.481 198680000 75750000 60662000 62273000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2531 1821 2448 49784;49785;49786 30793;30794;30795 30794 3 AYSEAVK Unmodified 766.38612 0.38611924 808 P0ADU2 ygiN Probable quinol monooxygenase YgiN yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.024 11.883 2 0.0063618 2970 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 95.793 63.728 1054300000 146260000 130460000 148570000 0 376150 0 0 0 0 0 0 0 149470000 0 138990000 0 0 0 108520000 114300000 117360000 0 0 0 2532 808 2449 49787;49788;49789;49790;49791;49792;49793;49794;49795;49796;49797;49798 30796;30797;30798;30799;30800;30801;30802 30799 7 AYSFDEVIVDSNGKK Unmodified 1670.8152 0.81516593 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 30.726 28.676 3 0.0053975 11288 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 55.173 50.625 13672000 0 0 0 0 0 0 0 0 0 3579400 4846500 4088500 1157200 0 0 0 0 0 0 0 0 0 0 0 2533 1836 2450 49799;49800;49801;49802 30803 30803 1 AYSGVRPLVASDDDPSGR Unmodified 1860.8966 0.89660415 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 21.599 21.568 2;3 4.0072E-09 9124 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.52 127.15 787620000 0 0 0 485690 727160 676320 107660000 103560000 100290000 12126000 7295500 4366300 98289000 84030000 79402000 3211100 3366400 2548500 50368000 64909000 52825000 3203500 4364900 3916900 2534 506 2451 49803;49804;49805;49806;49807;49808;49809;49810;49811;49812;49813;49814;49815;49816;49817;49818;49819;49820;49821;49822;49823;49824;49825;49826;49827;49828;49829;49830;49831;49832 30804;30805;30806;30807;30808;30809;30810;30811;30812;30813 30806 10 AYSLLEQLR Unmodified 1091.5975 0.597509 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 2 1 38.275 36.644 2 5.509E-06 18127 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 198.07 167.46 2749400000 70909000 71924000 79193000 19812000 15410000 18653000 371640000 363000000 350020000 127450000 120230000 141110000 141890000 176340000 161980000 31343000 20496000 26060000 122670000 121000000 114070000 28895000 27269000 28021000 2535 664 2452 49833;49834;49835;49836;49837;49838;49839;49840;49841;49842;49843;49844;49845;49846;49847;49848;49849;49850;49851;49852;49853;49854;49855;49856;49857;49858;49859;49860;49861 30814;30815;30816;30817;30818;30819;30820;30821;30822;30823;30824;30825;30826 30820 13 AYSTDSNMLGATHEAK Unmodified 1694.757 0.75699912 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 2 16.558 17.281 2;3 1.4229E-08 6180 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.45 119.32 806890000 127810000 123740000 114580000 0 0 5538400 54436000 53930000 64956000 1235600 0 0 48098000 36945000 35534000 0 0 0 41079000 52459000 46555000 0 0 0 2536 235 2453 49862;49863;49864;49865;49866;49867;49868;49869;49870;49871;49872;49873;49874;49875;49876;49877;49878;49879;49880;49881;49882;49883;49884;49885;49886;49887 30827;30828;30829;30830;30831;30832;30833;30834;30835;30836 30830 10 AYTLNYTCPTFIDKPGIR Unmodified 2129.0616 0.061560984 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.343 35.742 3 2.6708E-11 17325 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 134.44 129.44 268310000 21860000 24637000 15771000 1135000 1334000 1615300 18204000 23411000 26765000 3323100 0 0 15660000 15298000 16768000 0 930330 1029400 26028000 22213000 27829000 2839600 1657800 0 2537 1230 2454 49888;49889;49890;49891;49892;49893;49894;49895;49896;49897;49898;49899;49900;49901;49902;49903;49904;49905;49906;49907 30837;30838;30839;30840;30841;30842;30843;30844;30845;30846;30847;30848 30840 12 AYTPAEWAR Unmodified 1063.5087 0.50869399 562 P0A9W6 ibaG Acid stress protein IbaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.412 23.507 2 0.00028218 9806 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 119.41 112.13 1436100000 109850000 113920000 106210000 0 0 0 1934600 126290000 114630000 0 0 0 129050000 119370000 125390000 0 0 0 161270000 167910000 160300000 0 0 0 2538 562 2455 49908;49909;49910;49911;49912;49913;49914;49915;49916;49917;49918;49919 30849;30850;30851;30852;30853;30854;30855;30856 30856 8 AYTPAWAEQITGVSR Unmodified 1648.8209 0.82092001 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 1 1 1 2 2 2 2 1 2 2 2 2 2 2 41.348 39.68 2;3 7.7675E-15 18525 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 227.81 224.47 1050600000 31968000 30240000 24012000 5941300 4930700 5650100 63749000 61965000 58306000 23515000 23787000 18748000 53185000 50028000 54866000 0 4237000 3687400 92039000 101310000 85621000 84554000 82212000 86049000 2539 205 2456 49920;49921;49922;49923;49924;49925;49926;49927;49928;49929;49930;49931;49932;49933;49934;49935;49936;49937;49938;49939;49940;49941;49942;49943;49944;49945;49946;49947;49948;49949;49950;49951;49952;49953;49954;49955;49956 30857;30858;30859;30860;30861;30862;30863;30864;30865;30866;30867;30868;30869;30870;30871;30872;30873;30874;30875;30876;30877;30878;30879;30880 30879 23 AYTTFSQTK Unmodified 1045.508 0.50802529 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 14.652 15.425 2 2.1326E-05 4824 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 141.39 119.26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2540 1759 2457 49957;49958;49959;49960;49961;49962;49963;49964;49965;49966 30881;30882;30883;30884;30885;30886;30887;30888;30889;30890 30889 10 AYVEHYIQGDPDLAK Unmodified 1717.8312 0.83115034 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 1 2 1 1 1 2 2 2 2 1 2 25.577 24.563 2;3 1.7524E-08 10958 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 155.02 130.55 601590000 80426000 65177000 83369000 0 0 0 51007000 35926000 41021000 0 0 0 42763000 38011000 40115000 0 0 0 43068000 35797000 44905000 0 0 0 2541 184 2458 49967;49968;49969;49970;49971;49972;49973;49974;49975;49976;49977;49978;49979;49980;49981;49982;49983;49984;49985 30891;30892 30892 2 AYVGVDPVK Unmodified 946.51238 0.51238239 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.443 20.858 2 0.10735 8338 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 47.574 40.285 262050000 34425000 35106000 30062000 0 0 0 28196000 24484000 28505000 0 0 0 19605000 16874000 16245000 0 0 0 6921100 10265000 11360000 0 0 0 2542 25 2459 49986;49987;49988;49989;49990;49991;49992;49993;49994;49995;49996;49997 30893 30893 0 AYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETR Unmodified 3799.8298 0.82979349 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 33.271 31.704 4;5 6.8671E-57 15359 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 247.94 247.84 2298700000 32653000 42264000 19724000 10089000 9075100 6796800 237140000 273280000 277920000 84958000 88677000 110710000 186330000 191480000 213950000 11732000 19114000 13251000 121640000 126810000 141970000 26824000 27639000 24659000 2543 25 2460 49998;49999;50000;50001;50002;50003;50004;50005;50006;50007;50008;50009;50010;50011;50012;50013;50014;50015;50016;50017;50018;50019;50020;50021;50022;50023;50024;50025;50026;50027;50028;50029;50030;50031;50032;50033;50034;50035;50036;50037;50038;50039;50040;50041 30894;30895;30896;30897;30898;30899;30900;30901;30902;30903;30904;30905;30906;30907;30908;30909;30910;30911;30912;30913;30914;30915;30916;30917;30918;30919;30920;30921;30922;30923;30924;30925;30926;30927 30901 34 AYVLPNSFK Unmodified 1037.5546 0.55458155 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.474 28.878 2 0.0008931 13376 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 98.523 97.445 133150000 7372000 6050300 5353700 2833100 3021500 1981200 8326000 6227500 6084900 8288700 9299000 7775200 3364600 4174900 3918600 0 0 0 8962800 10524000 11056000 5367000 5952900 7218600 2544 1488 2461 50042;50043;50044;50045;50046;50047;50048;50049;50050;50051;50052;50053;50054;50055;50056;50057;50058;50059;50060;50061;50062 30928;30929;30930;30931;30932 30932 5 AYVMAETTQLVTDTK Unmodified 1669.8233 0.82328777 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.316 33.812 2 1.538E-08 16045 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.89 135.92 144700000 19209000 21162000 16246000 0 0 0 6700600 7305400 5974700 0 0 0 8157400 8047800 8490500 0 0 0 15475000 14137000 13792000 0 0 0 2545 623 2462 50063;50064;50065;50066;50067;50068;50069;50070;50071;50072;50073;50074 30933;30934;30935;30936;30937 30935 2 AYVVGEGALIHELYK Unmodified 1660.8825 0.88245763 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 3 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 39.148 37.391 2;3 2.1433E-12 18165 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 178.71 151.23 1182400000 102780000 102050000 114540000 30890000 35996000 27808000 85737000 80515000 87977000 2919200 3312700 0 75105000 63800000 60996000 0 0 0 100140000 100660000 101930000 2711600 2561100 0 2546 906 2463 50075;50076;50077;50078;50079;50080;50081;50082;50083;50084;50085;50086;50087;50088;50089;50090;50091;50092;50093;50094;50095;50096;50097;50098;50099;50100;50101;50102;50103;50104;50105;50106;50107;50108;50109;50110 30938;30939;30940;30941;30942;30943;30944;30945;30946;30947;30948;30949;30950;30951;30952;30953;30954;30955;30956;30957;30958;30959;30960;30961;30962;30963;30964;30965;30966 30955 29 AYVVQLGALK Unmodified 1060.6281 0.62808085 216 P09549 dedD Cell division protein DedD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.753 33.044 2 0.0023409 12683 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 79.469 77.045 92550000 6935700 5973800 0 796110 1359800 1270900 6127800 4252200 4931700 3153100 2477800 2323600 5812900 7545000 5344800 0 0 0 8633300 9792800 11829000 2029700 1960200 0 2547 216 2464 50111;50112;50113;50114;50115;50116;50117;50118;50119;50120;50121;50122;50123;50124;50125;50126;50127;50128;50129 30967;30968;30969;30970;30971;30972 30970 4 AYWNALTEDKK Unmodified 1337.6616 0.66156582 1308 P27830 rffG dTDP-glucose 4,6-dehydratase 2 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 23.521 22.734 2 0.00039361 9967 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.886 80.18 41509000 0 0 0 0 0 0 6285200 0 3399100 0 0 0 4426700 3766800 0 0 0 0 5741600 7442100 10447000 0 0 0 2548 1308 2465 50130;50131;50132;50133;50134;50135;50136 30973 30973 1 AYWNNLK Unmodified 907.4552 0.45520186 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.801 22.925 2 0.00547 7783 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 99.511 91.357 330000000 0 0 0 1947000 0 0 38952000 35417000 39386000 13941000 10869000 11120000 20810000 20403000 21283000 0 2326700 1566300 26044000 32633000 27750000 8671900 10492000 6387500 2549 1408 2466 50137;50138;50139;50140;50141;50142;50143;50144;50145;50146;50147;50148;50149;50150;50151;50152;50153;50154 30974;30975;30976;30977;30978;30979;30980;30981;30982;30983;30984;30985;30986;30987;30988;30989 30983 16 AYYDTDDATTK Unmodified 1262.5303 0.53027687 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 14.882 15.259 2 6.0983E-05 4099 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 127.3 114.67 102160000 0 0 0 3292400 3776100 0 22930000 0 0 7546400 6374000 6049300 0 0 0 1130800 1243300 0 0 22257000 17807000 3385700 3368000 2996900 2550 201 2467 50155;50156;50157;50158;50159;50160;50161;50162;50163;50164;50165;50166;50167 30990;30991;30992;30993;30994;30995;30996;30997 30991 6 AYYVGTDSK Unmodified 1002.4658 0.46582612 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.042 14.908 2 0.00017664 4750 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128.61 123.52 2228000000 590170000 555550000 525930000 0 0 0 66902000 62273000 62858000 0 0 0 45335000 43858000 44615000 0 0 0 82162000 77087000 71246000 0 0 0 2551 852 2468 50168;50169;50170;50171;50172;50173;50174;50175;50176;50177;50178;50179 30998;30999;31000;31001;31002;31003;31004;31005;31006;31007 31002 10 CADLGLETVIVER Unmodified 1473.7497 0.7497289 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 8 6 9 2 4 3 2 3 3 5 4 4 1 2 1 5 4 4 7 3 6 44.357 42.71 2;3 5.4215E-09 14384 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 196.76 189.38 7564600000 309890000 283280000 265310000 658960000 642190000 630330000 306940000 288130000 261640000 64930000 71624000 60040000 212640000 179150000 173220000 19381000 20250000 19242000 352030000 352110000 349970000 729680000 626450000 687220000 2552 542 2469 50180;50181;50182;50183;50184;50185;50186;50187;50188;50189;50190;50191;50192;50193;50194;50195;50196;50197;50198;50199;50200;50201;50202;50203;50204;50205;50206;50207;50208;50209;50210;50211;50212;50213;50214;50215;50216;50217;50218;50219;50220;50221;50222;50223;50224;50225;50226;50227;50228;50229;50230;50231;50232;50233;50234;50235;50236;50237;50238;50239;50240;50241;50242;50243;50244;50245;50246;50247;50248;50249;50250;50251;50252;50253;50254;50255;50256;50257;50258;50259;50260;50261;50262;50263;50264;50265;50266;50267;50268;50269;50270;50271;50272;50273 31008;31009;31010;31011;31012;31013;31014;31015;31016;31017;31018;31019;31020;31021;31022;31023;31024;31025;31026;31027;31028;31029;31030;31031;31032;31033;31034;31035;31036;31037;31038;31039;31040;31041;31042;31043;31044;31045;31046;31047;31048;31049;31050;31051;31052;31053;31054;31055;31056;31057;31058;31059;31060;31061;31062;31063;31064;31065;31066;31067;31068;31069;31070;31071;31072 31050 59 CAGFNNVDLDAAK Unmodified 1393.6296 0.62961376 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.398 26.251 2 6.7592E-09 11901 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 166.97 165.64 854380000 83225000 75376000 66085000 0 0 0 98978000 94641000 93924000 0 0 0 63739000 54207000 49987000 0 0 0 60723000 60191000 53309000 0 0 0 2553 1608 2470 50274;50275;50276;50277;50278;50279;50280;50281;50282;50283;50284;50285 31073;31074;31075;31076;31077;31078;31079;31080;31081;31082;31083;31084 31078 12 CAIITGAGAGIGK Unmodified 1187.6332 0.63324258 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.192 23.295 2 6.5888E-06 10208 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.48 109.82 688300000 116220000 96150000 91328000 0 0 0 95422000 92410000 79216000 0 0 0 14712000 18511000 12419000 0 0 0 27438000 23304000 21169000 0 0 0 2554 886 2471 50286;50287;50288;50289;50290;50291;50292;50293;50294;50295;50296;50297 31085;31086;31087;31088 31085 4 CAISDHR Unmodified 857.38138 0.38138499 1533 P39377 iadA Isoaspartyl dipeptidase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 10.052 10.893 2 0.12961 2476 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 58.981 42.827 11111000 5994700 0 0 0 0 0 0 0 0 0 0 0 0 730200 0 0 0 0 0 1772700 2613000 0 0 0 2555 1533 2472 50298;50299;50300;50301 31089 31089 0 CALIEAK Unmodified 803.42112 0.42112454 128 P06715 gor Glutathione reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.779 15.553 2 0.013597 5220 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.614 58.983 370640000 27736000 34812000 29289000 0 0 0 37650000 33685000 36680000 0 0 0 27194000 24536000 23557000 0 0 0 32392000 29706000 33400000 0 0 0 2556 128 2473 50302;50303;50304;50305;50306;50307;50308;50309;50310;50311;50312;50313 31090;31091 31090 2 CAVFVVEQNCPYQDIDGDDLTGDNR Unmodified 2899.2389 0.23888602 860 P0AEH3 elaA Protein ElaA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 45.434 43.921 3 6.1342E-05 21644 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 66.3 63.924 59274000 6437300 0 0 0 0 0 8046500 11156000 9967500 0 0 0 0 4362400 7174800 0 0 0 4982800 7146400 0 0 0 0 2557 860 2474 50314;50315;50316;50317;50318;50319;50320;50321 31092;31093 31092 0 CAVIAGALR Unmodified 929.51167 0.51167088 716 P0ACB4 hemG Protoporphyrinogen IX dehydrogenase [menaquinone] yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 22.217 21.708 2 0.0023754 7280 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 85.359 77.419 6667800 0 0 0 0 0 0 0 0 0 0 0 3406900 0 0 0 0 0 1090800 0 0 0 1473300 0 696680 2558 716 2475 50322;50323;50324;50325 31094 31094 1 CCGVPLIANGFTDK Unmodified 1550.7221 0.72213394 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 40.247 37.663 2 0.04649 15267 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 48.004 48.004 10998000 0 0 0 0 0 0 0 0 0 5065100 3605300 2327400 0 0 0 0 0 0 0 0 0 0 0 0 2559 500 2476 50326;50327;50328 31095;31096;31097 31095 0 CDANIIVETASAR Unmodified 1418.6824 0.68237762 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 29.578 28.306 2 2.8504E-17 13340 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 204.56 198.78 378860000 63287000 58566000 61683000 0 357380 0 32666000 24556000 24524000 0 0 0 17379000 16464000 12630000 0 0 0 20551000 22270000 23929000 0 0 0 2560 218 2477 50329;50330;50331;50332;50333;50334;50335;50336;50337;50338;50339;50340;50341 31098;31099;31100;31101;31102;31103 31100 4 CDEFTPDSLK Unmodified 1210.5176 0.5176037 1705 P65556 yfcD Uncharacterized Nudix hydrolase YfcD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.494 25.447 2 1.0207E-06 11034 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 169.44 169.44 349690000 36661000 30650000 31972000 0 0 0 27798000 21529000 23654000 0 0 0 28360000 26283000 26000000 0 0 0 32335000 33028000 31419000 0 0 0 2561 1705 2478 50342;50343;50344;50345;50346;50347;50348;50349;50350;50351;50352;50353 31104;31105;31106;31107;31108;31109;31110;31111;31112;31113;31114 31112 11 CDFMLDQVGNVFK Unmodified 1571.7112 0.7112349 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 51.266 50.035 2 9.6857E-06 24590 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.27 114.87 43400000 14432000 12346000 13112000 0 0 0 0 2289400 0 0 0 0 0 0 1220300 0 0 0 0 0 0 0 0 0 2562 1181 2479 50354;50355;50356;50357;50358 31115;31116 31115 2 CDFVSVPTHPTITK Unmodified 1600.7919 0.79192806 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 1 1 2 1 2 1 1 2 2 2 1 1 1 27.351 26.155 2;3 0.00030342 11955 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.095 64.902 755490000 61311000 62619000 51937000 8988400 7171200 6320600 55658000 58542000 55544000 8980900 5443100 0 47510000 41333000 43719000 0 521120 613000 72043000 81243000 73327000 3825600 4720600 4116600 2563 1880 2480 50359;50360;50361;50362;50363;50364;50365;50366;50367;50368;50369;50370;50371;50372;50373;50374;50375;50376;50377;50378;50379;50380;50381;50382;50383;50384;50385;50386;50387;50388;50389;50390;50391;50392 31117;31118;31119;31120;31121;31122;31123;31124;31125;31126;31127;31128;31129;31130;31131;31132;31133 31128 17 CDGPSALPLAK Unmodified 1127.5645 0.56449431 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 25.065 24.064 2 0.00019298 10879 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.4 101.04 1523500000 120250000 99961000 103080000 0 0 0 174690000 174080000 166910000 0 0 0 138810000 122990000 122420000 0 0 0 157790000 142500000 0 0 0 0 2564 299 2481 50393;50394;50395;50396;50397;50398;50399;50400;50401;50402;50403 31134;31135;31136;31137;31138;31139;31140;31141 31136 4 CDILEPGTLQGYDR Unmodified 1635.7563 0.75627084 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.891 35.57 2 1.7518E-06 17173 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 153.95 153.95 412990000 53906000 51374000 41498000 0 0 0 26269000 25367000 22685000 0 0 0 17237000 22874000 17979000 25215000 13878000 13737000 23762000 28900000 28309000 0 0 0 2565 508 2482 50404;50405;50406;50407;50408;50409;50410;50411;50412;50413;50414;50415;50416;50417;50418 31142;31143;31144;31145;31146;31147;31148;31149;31150;31151;31152;31153 31149 12 CDILEPGTLQGYDRDPR Unmodified 2003.9371 0.93708875 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 2 2 1 1 1 1 2 2 2 32.273 31.045 2;3 1.3362E-11 14589 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.03 149.3 2664000000 348860000 348310000 296900000 1686500 1715100 1223000 151550000 168050000 178610000 0 0 0 158610000 136010000 132500000 1394800 896430 1352200 242880000 254780000 238700000 0 0 0 2566 508 2483 50419;50420;50421;50422;50423;50424;50425;50426;50427;50428;50429;50430;50431;50432;50433;50434;50435;50436;50437;50438;50439;50440;50441;50442;50443;50444;50445;50446 31154;31155;31156;31157;31158;31159;31160;31161;31162;31163;31164;31165;31166;31167;31168;31169;31170;31171;31172;31173;31174 31168 21 CDKPVVMVGAMR Unmodified 1361.6618 0.66178229 40 P00805 ansB L-asparaginase 2 yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 21.687 21.737 2;3 1.7946E-05 8840 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 139.38 134.42 1610200000 0 4232100 1942100 0 0 0 220580000 203620000 232000000 0 0 0 185440000 203640000 177740000 0 0 0 120830000 129640000 130500000 0 0 0 2567 40 2484 50447;50448;50449;50450;50451;50452;50453;50454;50455;50456;50457;50458;50459;50460;50461;50462;50463;50464;50465;50466 31175;31176;31177;31178;31179;31180;31181;31182;31183;31184;31185;31186;31187;31188 31183 11 CDLIADGIIGAVAEVGVNVPVVVR Unmodified 2434.3254 0.32538024 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 2 1 2 1 1 1 1 1 1 55.783 54.292 2;3 9.4652E-50 26800 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 232.28 227.39 608640000 69170000 59272000 68643000 0 0 0 53327000 27196000 52187000 0 0 0 19202000 22629000 21086000 0 0 0 107020000 63371000 45546000 0 0 0 2568 392 2485 50467;50468;50469;50470;50471;50472;50473;50474;50475;50476;50477;50478;50479;50480 31189;31190;31191;31192 31192 3 CDLLVIKPDQYQTPVELDDEEDD Unmodified 2748.2324 0.23238688 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 50.919 49.647 2;3 5.2164E-10 23289 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 130.24 126.72 303230000 16450000 17009000 12873000 0 0 0 44968000 47603000 46909000 0 2017300 0 24587000 17835000 21280000 0 0 0 19114000 17441000 15142000 0 0 0 2569 585 2486 50481;50482;50483;50484;50485;50486;50487;50488;50489;50490;50491;50492;50493;50494;50495;50496;50497;50498;50499;50500;50501;50502;50503;50504;50505 31193;31194;31195;31196;31197;31198;31199;31200;31201;31202 31199 10 CDLMTNMVFEFTDTQGVMGMHYAR Unmodified 2853.2053 0.20528316 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.658 53.195 3 2.755E-07 26116 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 109.05 109.05 451200000 54605000 0 38338000 0 0 0 27128000 33026000 24124000 0 5513000 3935800 42139000 38760000 37909000 0 0 0 52204000 52614000 40908000 0 0 0 2570 62 2487 50506;50507;50508;50509;50510;50511;50512;50513;50514;50515;50516;50517;50518 31203;31204;31205;31206;31207;31208;31209 31204 7 CDMVDDEELLELVEMEVR Unmodified 2222.9745 0.9745214 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 55.741 54.299 2;3 6.563E-127 27062 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 386.83 381.55 26499000000 2159100000 2443900000 2323100000 60522000 44341000 36621000 1910000000 1259000000 1696200000 20175000 19268000 17878000 2893500000 2713400000 0 0 0 0 3121200000 2697900000 3016200000 22217000 22654000 21497000 2571 1048 2488 50519;50520;50521;50522;50523;50524;50525;50526;50527;50528;50529;50530;50531;50532;50533;50534;50535;50536;50537;50538;50539;50540;50541;50542;50543;50544;50545;50546;50547;50548;50549;50550;50551;50552;50553;50554;50555;50556;50557;50558 31210;31211;31212;31213;31214;31215;31216;31217;31218;31219;31220;31221;31222;31223;31224;31225;31226;31227;31228;31229;31230;31231;31232;31233;31234;31235;31236;31237;31238;31239 31212 30 CDMVDDEELLELVEMEVR Oxidation (M) 2238.9694 0.96943602 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 1 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 2 2 2 1 2 2 2 55.531 54.047 2;3 7.0404E-29 26978 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 210.38 209.89 1154200000 0 0 0 1982500 1466700 0 120370000 111250000 101130000 0 0 0 190340000 151830000 98937000 0 0 0 125690000 129680000 121550000 0 0 0 2572 1048 2488 50559;50560;50561;50562;50563;50564;50565;50566;50567;50568;50569;50570;50571;50572;50573;50574;50575;50576;50577 31240;31241;31242;31243;31244;31245;31246;31247;31248;31249 31240 470 9 CDSCGQVLYR Unmodified 1256.5278 0.52779123 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.492 17.931 2 1.27E-12 6223 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 218.79 218.79 1012300000 64918000 72226000 63450000 2192000 2557000 1180100 82192000 83366000 79088000 7691400 6883500 6806900 69907000 73213000 69141000 3563800 2008200 2423900 100430000 97864000 92683000 10201000 9731900 8558100 2573 547 2489 50578;50579;50580;50581;50582;50583;50584;50585;50586;50587;50588;50589;50590;50591;50592;50593;50594;50595;50596;50597;50598;50599;50600;50601 31250;31251;31252;31253;31254;31255;31256;31257;31258;31259;31260;31261;31262;31263;31264;31265;31266;31267 31266 17 CEACQGDGVIK Unmodified 1235.5275 0.52745688 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.304 13.839 2 3.8959E-05 3303 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 131.5 122.97 133540000 9558700 8334700 8084300 0 0 0 8093400 10574000 11739000 3486100 2160000 2355200 0 5532800 5336400 14973000 7291300 10582000 9211200 7833900 7282800 1114000 0 0 2574 222 2490 50602;50603;50604;50605;50606;50607;50608;50609;50610;50611;50612;50613;50614;50615;50616;50617;50618;50619 31268;31269;31270;31271;31272;31273;31274;31275 31269 8 CEAVSEIR Unmodified 962.44913 0.4491302 1676 P64483 yeaK Uncharacterized protein YeaK yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.846 14.608 2 7.4644E-05 4633 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.17 147.44 151170000 14433000 16163000 11648000 778580 915820 900580 17106000 14703000 15742000 1396800 1313700 1069800 8160200 7600000 8129200 0 0 0 10335000 10968000 9801900 0 0 0 2575 1676 2491 50620;50621;50622;50623;50624;50625;50626;50627;50628;50629;50630;50631;50632;50633;50634;50635;50636;50637 31276;31277;31278;31279;31280;31281 31276 6 CECNQSDEEFGGVVR Unmodified 1784.7094 0.709397 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 24.079 23.251 2 1.4262E-35 10109 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 257.92 257.92 35507000 11183000 9921400 11994000 595170 902560 911700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2576 46 2492 50638;50639;50640;50641;50642;50643 31282;31283;31284 31283 3 CEDLDAAGIAASVK Unmodified 1418.6711 0.67114423 1411 P33219 yebF Protein YebF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 31.958 30.618 2 1.0979E-26 14388 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 240.21 230.26 607300000 85417000 83106000 87770000 1071500 0 0 60510000 55556000 52185000 0 0 0 25221000 27083000 20270000 0 0 0 56160000 0 52955000 0 0 0 2577 1411 2493 50644;50645;50646;50647;50648;50649;50650;50651;50652;50653;50654;50655;50656 31285;31286;31287;31288;31289;31290;31291;31292;31293;31294;31295 31291 11 CEEIANELTR Unmodified 1233.566 0.56595087 1871 P76550 yffS Uncharacterized protein YffS yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 22.348 22.011 2 0.0047929 9186 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 74.173 58.558 15132000 6738300 3723800 4669900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2578 1871 2494 50657;50658;50659 31296 31296 0 CEFLYQQSHFFENSFLVK Unmodified 2322.0779 0.07793933 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 49.234 47.861 3 2.0708E-10 23235 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.48 130.41 244280000 0 0 0 0 0 0 34238000 30988000 29612000 0 0 0 29461000 29110000 27238000 0 0 0 20204000 22654000 20777000 0 0 0 2579 1467 2495 50660;50661;50662;50663;50664;50665;50666;50667;50668 31297;31298;31299;31300;31301;31302;31303;31304;31305 31301 9 CEGLDVTILLQDYR Unmodified 1693.8345 0.83452116 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 53.598 52.105 2 0.050103 25996 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 46.592 40.62 89672000 0 0 1635500 0 0 0 25382000 27283000 30147000 0 0 0 0 0 2688700 0 0 0 2535100 0 0 0 0 0 2580 522 2496 50669;50670;50671;50672;50673;50674 31306 31306 0 CEHPITLLAQALA Unmodified 1435.7493 0.74933497 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 49.011 47.521 2 4.211E-05 18959 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 104.17 101.32 89873000 0 0 0 0 0 0 11687000 16504000 11214000 13794000 11351000 8260700 0 0 4495400 0 0 0 4887400 3622200 4057100 0 0 0 2581 500 2497 50675;50676;50677;50678;50679;50680;50681;50682;50683;50684 31307;31308;31309;31310 31308 3 CELPHHTTLPLFEK Unmodified 1720.8607 0.86067633 1129 P16689 phnM Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 26.507 25.749 4 0.025614 11896 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 41.577 35.007 17140000 0 0 0 0 0 0 0 0 2812200 0 0 0 0 0 0 0 851430 963260 7316900 5196200 0 0 0 0 2582 1129 2498 50685;50686;50687;50688;50689 31311 31311 1 CEQLGLSLLNFHPGSHLMQISEEDCLAR Unmodified 3253.5318 0.53183733 229 P0A6C1 nfo Endonuclease 4 yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 47.547 47.602 4 7.2569E-06 17391 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 81.341 79.138 16867000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4079000 4667600 8120000 0 0 0 0 0 0 2583 229 2499 50690;50691;50692 31312 31312 1 CETNGDAIR Unmodified 1034.4451 0.44510746 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.131 11.963 2 0.00021231 3026 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.5 118.86 347440000 29780000 21790000 24671000 0 0 0 30234000 24467000 23985000 0 0 0 39504000 30982000 30193000 0 0 0 34423000 28243000 29168000 0 0 0 2584 597 2500 50693;50694;50695;50696;50697;50698;50699;50700;50701;50702;50703;50704 31313;31314;31315;31316;31317;31318;31319;31320;31321 31319 9 CEVACPSDVK Unmodified 1163.4951 0.49509412 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 13.253 13.935 2 0.00012302 4247 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.36 124.43 63262000 0 0 0 0 0 0 9607100 9875600 8501400 7338000 5360900 6170600 4189500 4447200 3146300 0 0 0 0 1998200 2627100 0 0 0 2585 500 2501 50705;50706;50707;50708;50709;50710;50711;50712;50713;50714;50715 31322;31323;31324;31325;31326;31327 31325 3 CFEGWQQR Unmodified 1109.4713 0.47126263 1405 P33018 yeiG S-formylglutathione hydrolase YeiG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.943 21.971 2 1.0769E-05 8960 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 178.84 177.19 93680000 19809000 20644000 17380000 0 0 0 4341500 5648800 3005100 0 0 0 0 2957600 3220900 0 0 0 5209900 6088400 5375400 0 0 0 2586 1405 2502 50716;50717;50718;50719;50720;50721;50722;50723;50724;50725;50726 31328;31329;31330 31328 3 CFENDNIIHVSGK Unmodified 1531.7089 0.70892672 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 23.477 22.68 2;3 3.4213E-12 9809 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 222.2 216.73 1367200000 101190000 96156000 96241000 1989500 1678200 1661600 106010000 93957000 87953000 1740600 1393700 0 122500000 97407000 92728000 0 0 0 145470000 160280000 156960000 0 848220 1066900 2587 680 2503 50727;50728;50729;50730;50731;50732;50733;50734;50735;50736;50737;50738;50739;50740;50741;50742;50743;50744;50745;50746;50747;50748;50749;50750;50751;50752;50753;50754;50755;50756;50757 31331;31332;31333;31334;31335;31336;31337;31338;31339;31340;31341;31342;31343;31344;31345;31346;31347;31348;31349;31350 31336 20 CFGVPLVR Unmodified 946.50586 0.50585722 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.34 32.892 2 0.0057475 16150 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.113 86.113 752140000 95100000 91704000 90171000 0 0 0 66634000 69701000 59102000 0 0 0 38961000 33756000 38711000 0 0 0 58254000 53781000 56269000 0 0 0 2588 43 2504 50758;50759;50760;50761;50762;50763;50764;50765;50766;50767;50768;50769 31351;31352;31353;31354;31355;31356;31357 31351 4 CFRDEDLR Unmodified 1109.4924 0.492392 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.911 13.752 2 0.10994 4204 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 77.318 75.119 302130000 18697000 17688000 22438000 0 0 0 25018000 28045000 22302000 0 0 0 30974000 24786000 22509000 0 0 0 31275000 35189000 23206000 0 0 0 2589 1189 2505 50770;50771;50772;50773;50774;50775;50776;50777;50778;50779;50780;50781 31358 31358 0 CFSGIDHIENPDEDGIFK Unmodified 2091.9208 0.92076999 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.892 37.219 3 1.9125E-05 18486 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.636 85.636 234700000 25875000 23967000 21050000 0 0 0 27367000 28888000 27643000 0 0 0 10336000 7453400 8049300 0 0 0 19993000 15185000 18893000 0 0 0 2590 1282 2506 50782;50783;50784;50785;50786;50787;50788;50789;50790;50791;50792;50793 31359;31360;31361;31362 31359 4 CGDEVIK Unmodified 819.37965 0.37965365 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.786 12.473 2 0.0099634 2974 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 87.284 72.063 206310000 0 0 0 0 0 0 0 6909300 0 0 5970500 5872000 41954000 33472000 35588000 0 0 0 20308000 26607000 21783000 0 4411300 3434900 2591 252 2507 50794;50795;50796;50797;50798;50799;50800;50801;50802;50803;50804 31363 31363 1 CGDIFSTESEYLTGLDR Unmodified 1961.8677 0.86767178 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.934 49.678 2 5.3851E-50 24545 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 284.32 273.71 579100000 19220000 13860000 14427000 0 0 0 69822000 65268000 63426000 0 0 0 58550000 52751000 49336000 0 0 0 59878000 59423000 53145000 0 0 0 2592 1805 2508 50805;50806;50807;50808;50809;50810;50811;50812;50813;50814;50815;50816 31364;31365;31366;31367;31368;31369;31370;31371;31372;31373;31374 31364 11 CGEDLNYAR Unmodified 1096.4608 0.46075752 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.466 16.108 2 2.8247E-08 5503 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 197.6 188.78 1465300000 82606000 77902000 72759000 1603000 1402300 1444500 165520000 161150000 171290000 3081100 2255000 2902400 147740000 118240000 123940000 0 0 0 103280000 115540000 106250000 2500200 1585400 2346900 2593 1184 2509 50817;50818;50819;50820;50821;50822;50823;50824;50825;50826;50827;50828;50829;50830;50831;50832;50833;50834;50835;50836;50837 31375;31376;31377;31378;31379;31380;31381;31382;31383;31384;31385;31386;31387;31388;31389 31384 7 CGEVGWLVCAIK Unmodified 1390.6737 0.67372718 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 1 1 1 45.747 44.555 2;3 3.7249E-08 15766 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 160.82 149.23 387670000 24961000 23579000 26257000 1967900 1910400 1883100 18540000 15168000 11616000 0 0 3298500 15504000 16027000 15939000 34380000 24671000 24939000 24037000 31412000 25058000 14751000 15916000 15856000 2594 1633 2510 50838;50839;50840;50841;50842;50843;50844;50845;50846;50847;50848;50849;50850;50851;50852;50853;50854;50855;50856;50857;50858;50859;50860;50861;50862;50863;50864;50865;50866;50867 31390;31391;31392;31393;31394;31395;31396;31397;31398;31399;31400;31401;31402;31403;31404;31405;31406;31407;31408 31391 19 CGFLGLLHMEIIQER Unmodified 1814.9171 0.91714535 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.041 45.481 3 1.1274E-06 19184 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 95.428 90.427 216340000 0 0 76821000 0 4521900 0 0 0 0 0 0 0 0 0 0 21695000 21752000 25222000 0 0 0 24016000 22958000 19350000 2595 1633 2511 50868;50869;50870;50871;50872;50873;50874;50875 31409;31410;31411;31412;31413;31414;31415 31409 7 CGFVDIR Unmodified 865.41162 0.41162248 1848 P76291 cmoB tRNA (mo5U34)-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 25.82 24.544 2 0.1431 10949 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 46.016 41.798 29226000 0 0 0 0 0 0 3814800 3351100 3559600 0 0 0 0 0 0 0 0 0 5861700 5449900 7188600 0 0 0 2596 1848 2512 50876;50877;50878;50879;50880;50881 31416 31416 1 CGGNLGTDGSVAYLFSK Unmodified 1744.809 0.80903469 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.353 40.654 2 5.6874E-25 20193 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 223.22 216.24 1019100000 58248000 68174000 60776000 0 0 0 111410000 107700000 105760000 0 0 0 74715000 65120000 57184000 0 0 0 105960000 106500000 97588000 0 0 0 2597 412 2513 50882;50883;50884;50885;50886;50887;50888;50889;50890;50891;50892;50893 31417;31418;31419;31420;31421;31422;31423;31424;31425;31426;31427;31428 31418 12 CGHDLFDGEVINATGETLDK Unmodified 2189.9899 0.98991218 1018 P0AGG4 trxC Thioredoxin-2 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.628 36.9 3 6.3537E-07 18347 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 95.666 95.121 143370000 13620000 10331000 13045000 1324000 0 0 10055000 8183300 7821900 0 0 0 9271500 5893200 9597000 0 0 0 19271000 17282000 15879000 973950 822570 0 2598 1018 2514 50894;50895;50896;50897;50898;50899;50900;50901;50902;50903;50904;50905;50906;50907;50908 31429;31430;31431 31429 3 CGHMGGK Unmodified 745.29996 0.29996354 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 4.6587 5.5244 2 0.0059186 1081 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.64 97.64 1342900000 366970000 414580000 394150000 158020 169270 205350 0 0 0 0 0 0 19137000 10532000 14699000 0 0 0 42715000 38180000 41420000 0 0 0 2599 517 2515 50909;50910;50911;50912;50913;50914;50915;50916;50917;50918;50919;50920;50921;50922;50923 31432;31433;31434;31435 31433 4 CGHMGGK Oxidation (M) 761.29488 0.29487817 517 P0A9G6 aceA Isocitrate lyase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 2 2 2 4.3506 5.1332 2 0.043779 441 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 65.897 63.322 88691000 33263000 30468000 24959000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2600 517 2515 50924;50925;50926;50927;50928;50929 31436;31437;31438 31437 316 3 CGHRPNK Unmodified 867.41335 0.41335382 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 4.4526 5.1851 2 0.00032908 769 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.66 146.81 12473000 4843700 4521000 3108100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2601 1914 2516 50930;50931;50932 31439;31440;31441 31439 3 CGIATTAR Unmodified 848.41744 0.41743614 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 11.479 12.36 2 0.00013648 3079 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 129.39 115.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2602 1830 2517 50933;50934;50935;50936;50937;50938 31442;31443;31444;31445;31446;31447 31446 6 CGIGEISIPENEPGSSIMPGK Unmodified 2171.0239 0.023854849 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 43.589 42.207 2 5.68E-15 20507 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.25 124.42 81767000 12949000 12077000 13186000 0 0 0 7116100 5207200 4333600 0 0 0 5542900 3355400 2341600 0 0 1851700 5310300 3480900 5015700 0 0 0 2603 106 2518 50939;50940;50941;50942;50943;50944;50945;50946;50947;50948;50949;50950;50951 31448;31449;31450 31449 3 CGIIIANEK Unmodified 1016.5325 0.5324659 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 19.921 20.301 2 0.014894 7842 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.692 43.543 54252000 0 16139000 12584000 607050 0 0 5509100 4023300 6781500 0 0 0 0 0 0 0 0 0 0 0 8607800 0 0 0 2604 198 2519 50952;50953;50954;50955;50956;50957;50958 31451;31452;31453 31451 0 CGIVGAIAQR Unmodified 1043.5546 0.55459833 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 1 1 1 1 1 1 23.392 22.651 2 2.0716E-06 9778 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 158.08 151.32 1225400000 124420000 112590000 108070000 0 0 0 108760000 102460000 2134300 0 0 0 93745000 69977000 71202000 0 0 0 129920000 145610000 154550000 0 1954600 0 2605 1137 2520 50959;50960;50961;50962;50963;50964;50965;50966;50967;50968;50969;50970;50971;50972 31454;31455;31456;31457;31458;31459;31460;31461;31462;31463;31464;31465 31458 12 CGIVGAIAQR Acetyl (Protein N-term) 1085.5652 0.56516301 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 1 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 43.477 41.944 2 0.04003 20811 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 45.081 42.73 25862000 0 0 0 0 0 0 3746600 3848000 0 0 0 0 2851100 3419800 3246100 0 0 0 3160200 2450500 3139700 0 0 0 2606 1137 2520 50973;50974;50975;50976;50977;50978;50979;50980 31466 31466 0 CGIVGLPNVGK Unmodified 1112.6012 0.60121417 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.28 30.941 2 0.00019502 14061 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 105.14 103.49 691710000 62534000 61288000 52172000 0 0 0 40665000 43230000 42757000 0 0 0 55190000 52214000 53837000 0 0 0 73454000 72634000 81739000 0 0 0 2607 680 2521 50981;50982;50983;50984;50985;50986;50987;50988;50989;50990;50991;50992 31467;31468;31469;31470;31471;31472;31473;31474;31475;31476;31477;31478 31476 12 CGLDGVVCSAQEAVR Unmodified 1619.7396 0.73957492 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.719 33.271 2 4.6068E-20 15316 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 208.17 208.17 506340000 77081000 58614000 66005000 0 0 0 19948000 20686000 24613000 0 0 0 41063000 29726000 29499000 0 0 0 46057000 47279000 45773000 0 0 0 2608 181 2522 50993;50994;50995;50996;50997;50998;50999;51000;51001;51002;51003;51004 31479;31480;31481;31482;31483;31484;31485;31486;31487;31488;31489;31490 31488 12 CGLTPQYEQLENIQK Unmodified 1819.8774 0.87744861 123 P06610 btuE Vitamin B12 transport periplasmic protein BtuE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.904 32.456 2 2.6197E-20 15736 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 215.79 214.72 428780000 71058000 60954000 53814000 0 0 0 38937000 39376000 36613000 0 0 0 17655000 14394000 17007000 0 0 0 24431000 28805000 25734000 0 0 0 2609 123 2523 51005;51006;51007;51008;51009;51010;51011;51012;51013;51014;51015;51016 31491;31492;31493;31494;31495;31496;31497;31498;31499;31500;31501 31492 11 CGMFSSDR Unmodified 958.36369 0.36368601 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.352 16.842 2 0.16643 5844 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 46.426 46.426 298970000 9355900 8201800 6820500 0 0 0 30183000 31414000 30103000 2889100 7918200 6911400 21786000 16832000 17018000 6230200 4259400 4115100 28291000 31462000 27155000 2100100 2737000 3188800 2610 30 2524 51017;51018;51019;51020;51021;51022;51023;51024;51025;51026;51027;51028;51029;51030;51031;51032;51033;51034;51035;51036;51037 31502 31502 0 CGNCDAHLGHVFPDGPQPTGER Unmodified 2420.0386 0.038610486 310 P0A746 msrB Peptide methionine sulfoxide reductase MsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 2 2 2 21.823 21.853 3;4 3.597E-16 8865 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155.86 155.86 1002900000 154780000 137160000 93867000 1150300 0 0 46266000 52169000 44722000 0 0 0 65516000 63176000 47544000 0 0 0 99664000 94487000 102400000 0 0 0 2611 310 2525 51038;51039;51040;51041;51042;51043;51044;51045;51046;51047;51048;51049;51050;51051;51052;51053;51054;51055;51056;51057;51058;51059;51060;51061 31503;31504;31505;31506;31507;31508;31509;31510;31511;31512;31513;31514;31515;31516;31517;31518;31519;31520;31521;31522;31523;31524 31514 22 CGNHDASR Unmodified 915.36171 0.36171218 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 3.2131 4.1346 2 0.0065809 553 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 84.743 77.33 15486000 0 0 0 0 0 0 0 0 0 0 0 0 1751100 1507700 1212400 0 0 0 3381100 3383700 4249600 0 0 0 2612 1323 2526 51062;51063;51064;51065;51066;51067 31525;31526;31527 31525 3 CGSCIIEDLCEYK Unmodified 1645.6786 0.67861415 637 P0AB83 nth Endonuclease III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 37.816 37.938 2 1.248E-05 13137 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 115.57 113.44 10927000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4913700 2443600 3569700 0 0 0 0 0 0 2613 637 2527 51068;51069;51070 31528;31529;31530 31530 3 CGSCIIEDLCEYKEK Unmodified 1902.8162 0.81617026 637 P0AB83 nth Endonuclease III yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 30.698 30.72 3 0.00017463 10055 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 71.98 70.111 13551000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4853100 4686600 4011300 0 0 0 0 0 0 2614 637 2528 51071;51072;51073 31531 31531 1 CGSNIDLVSHHEEVLDK Unmodified 1950.9105 0.91053965 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 2 2 2 2 2 2 2 2 2 21.474 21.736 3;4 8.7076E-06 8227 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 88.133 81.726 306020000 17339000 29752000 32049000 175900 0 0 29551000 27211000 23955000 0 0 0 23858000 18789000 17551000 0 0 0 24608000 30954000 30224000 0 0 0 2615 880 2529 51074;51075;51076;51077;51078;51079;51080;51081;51082;51083;51084;51085;51086;51087;51088;51089;51090;51091;51092;51093;51094;51095;51096;51097 31532;31533;31534;31535 31535 4 CGTAMDSYLIDPK Unmodified 1469.6531 0.65305132 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.788 33.284 2 9.7809E-07 15902 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.66 128.81 318460000 23817000 22613000 20145000 0 0 0 23206000 23308000 24755000 1148000 0 1497600 22825000 22311000 19804000 2764400 1151800 0 36251000 32834000 33346000 2505800 1856100 2320400 2616 124 2530 51098;51099;51100;51101;51102;51103;51104;51105;51106;51107;51108;51109;51110;51111;51112;51113;51114;51115;51116 31536;31537;31538;31539;31540;31541;31542;31543;31544;31545;31546;31547 31539 12 CGVEVTQTK Unmodified 1020.491 0.49099502 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 15.58 15.781 2 4.62E-16 2843 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 237.76 229.83 14917000000 104110000 103540000 88477000 7777500 9568000 9033100 87328000 91723000 66749000 994700000 819610000 794040000 109280000 90450000 67069000 2784500000 2098000000 2210800000 109290000 122020000 113690000 1326600000 1373700000 1334800000 2617 458 2531 51117;51118;51119;51120;51121;51122;51123;51124;51125;51126;51127;51128;51129;51130;51131;51132;51133;51134;51135;51136;51137;51138;51139;51140;51141;51142;51143;51144;51145;51146;51147;51148;51149 31548;31549;31550;31551;31552;31553;31554;31555;31556;31557;31558;31559;31560;31561;31562;31563;31564;31565;31566;31567;31568;31569;31570;31571;31572;31573;31574;31575;31576;31577;31578;31579;31580 31552 30 CHELALLR Unmodified 1010.5331 0.5331346 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.082 20.514 2 0.0011037 8243 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 111.65 101.51 237590000 14646000 13017000 12306000 0 0 0 57396000 59757000 53296000 0 0 0 3219900 3945200 1896500 0 0 0 5584800 5495800 7028600 0 0 0 2618 1265 2532 51150;51151;51152;51153;51154;51155;51156;51157;51158;51159;51160;51161 31581 31581 1 CHFHLPIYTPEVLTLCPK Unmodified 2224.1173 0.11730172 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 1 2 2 2 2 2 2 2 1 2 1 2 1 44.345 42.765 3;4 5.015E-07 21245 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 104.41 95.814 325870000 51567000 27406000 63768000 11886000 10631000 9958300 49296000 40922000 31800000 0 0 0 3033800 5201000 0 0 0 0 6247300 10221000 3931500 0 0 0 2619 613 2533 51162;51163;51164;51165;51166;51167;51168;51169;51170;51171;51172;51173;51174;51175;51176;51177;51178;51179;51180;51181;51182;51183;51184;51185 31582;31583;31584;31585;31586;31587;31588 31583 5 CHPFFTGK Unmodified 992.45382 0.45382165 358 P0A7M9 rpmE 50S ribosomal protein L31 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.852 15.391 2 0.0009869 4632 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 114.72 106.04 905310000 118590000 104650000 123770000 4799600 4686500 4807200 43886000 43824000 41247000 10840000 8757100 8929800 41055000 37739000 40865000 11666000 3815200 4218100 75749000 77181000 73486000 6900400 6073000 7778000 2620 358 2534 51186;51187;51188;51189;51190;51191;51192;51193;51194;51195;51196;51197;51198;51199;51200;51201;51202;51203;51204;51205;51206;51207;51208;51209 31589;31590;31591;31592;31593;31594;31595;31596;31597;31598;31599;31600;31601;31602 31601 14 CHSIMNCVSVCPK Unmodified 1590.6775 0.67750871 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 1 1 1 1 1 2 2 1 2 2 2 1 2 1 19.689 20.072 2;3 1.5543E-17 7675 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 234.61 230.69 332020000 23923000 20289000 18123000 4647200 8583000 8912500 9251200 10193000 11385000 4519300 4195200 3310000 20773000 19576000 16177000 0 0 0 40492000 41337000 41082000 7315200 11105000 6830800 2621 150 2535 51210;51211;51212;51213;51214;51215;51216;51217;51218;51219;51220;51221;51222;51223;51224;51225;51226;51227;51228;51229;51230;51231;51232;51233;51234;51235;51236;51237;51238;51239;51240;51241 31603;31604;31605;31606;31607;31608;31609;31610;31611;31612;31613;31614;31615;31616;31617;31618;31619;31620;31621;31622;31623;31624 31620 22 CHSQAFTIK Unmodified 1090.523 0.52296385 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 12.811 13.594 2;3 1.9545E-12 4047 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 224.86 194.68 877700000 122060000 107410000 105920000 0 0 0 91561000 84006000 83578000 1392000 1409800 0 39771000 30472000 32128000 0 0 0 62800000 58168000 57022000 0 0 0 2622 549 2536 51242;51243;51244;51245;51246;51247;51248;51249;51250;51251;51252;51253;51254;51255;51256;51257;51258;51259;51260;51261;51262;51263;51264;51265;51266;51267 31625;31626;31627;31628;31629;31630;31631;31632;31633;31634;31635;31636 31625 12 CIFCGLCEEACPTTAIQLTPDFEMGEYKR Unmodified 3495.5277 0.52773951 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 51.754 50.412 3 2.2718E-12 20218 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 133.95 133.37 84681000 0 0 0 3528300 3027500 2578400 0 0 4003200 9309500 9963300 10518000 0 0 3955200 0 0 0 4995400 0 6364500 8629500 8569800 9239000 2623 930 2537 51268;51269;51270;51271;51272;51273;51274;51275;51276;51277;51278;51279;51280 31637;31638;31639;31640;31641;31642 31638 6 CIFCYPR Unmodified 1014.4415 0.4415424 1067;1156 P11349;P19318 narH;narY Respiratory nitrate reductase 1 beta chain;Respiratory nitrate reductase 2 beta chain no no 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.763 28.337 2 0.0019599 10486 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 120.76 118.05 210640000 4654100 5676800 6558500 0 0 0 14781000 17344000 12030000 4464500 4642800 4432900 11012000 9497200 10724000 0 0 756460 20269000 19687000 19672000 14220000 14844000 15369000 2624 1067;1156 2538 51281;51282;51283;51284;51285;51286;51287;51288;51289;51290;51291;51292;51293;51294;51295;51296;51297;51298;51299 31643;31644;31645;31646;31647;31648;31649;31650 31645 7 CIFTTVSPEK Unmodified 1180.5798 0.57981002 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.753 25.606 2 0.00019061 11121 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 122.13 110.07 125320000 16014000 11636000 11052000 0 0 0 7842800 7425800 5048100 0 0 0 8082700 8083700 9776100 0 0 0 12194000 14552000 13610000 0 0 0 2625 1784 2539 51300;51301;51302;51303;51304;51305;51306;51307;51308;51309;51310;51311 31651;31652;31653;31654;31655;31656;31657;31658;31659 31658 7 CIGCHTCSVTCK Unmodified 1481.5884 0.58835935 1067;1156 P11349;P19318 narH;narY Respiratory nitrate reductase 1 beta chain;Respiratory nitrate reductase 2 beta chain no no 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.327 11.976 2 1.2682E-11 3090 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 183.67 183.67 212910000 4436200 0 0 0 682390 0 14605000 15975000 13118000 6608700 7916500 5948200 13541000 10586000 11345000 0 0 0 18648000 14538000 17740000 19595000 21940000 15688000 2626 1067;1156 2540 51312;51313;51314;51315;51316;51317;51318;51319;51320;51321;51322;51323;51324;51325;51326;51327;51328 31660;31661 31661 2 CINGITANK Unmodified 989.49641 0.49641475 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 13.026 13.867 2 0.10121 4205 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 48.787 32.232 73897000 0 0 0 0 0 0 24554000 0 29377000 0 0 0 0 0 19966000 0 0 0 0 0 0 0 0 0 2627 697 2541 51329;51330;51331 31662;31663 31662 0 CINKLEEITSGDLIVDGLK Unmodified 2116.1086 0.10857076 1053 P10346 glnQ Glutamine transport ATP-binding protein GlnQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 46.11 44.563 3 0.00011491 15955 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 66.893 65.532 20887000 0 0 0 3096600 3307400 3237300 0 0 0 2801000 0 3086700 0 0 0 0 0 3172800 0 0 0 0 2185400 0 2628 1053 2542 51332;51333;51334;51335;51336;51337;51338 31664;31665;31666;31667;31668 31667 4 CIVDSSGEALSAALAIGNIELVKPNQK Unmodified 2796.4691 0.46914395 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.079 51.639 3 5.8768E-23 25515 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 173.89 173.74 435000000 34369000 32018000 33983000 0 0 0 60487000 61520000 58778000 0 0 0 25272000 24138000 23110000 0 0 0 26192000 27575000 27561000 0 0 0 2629 145 2543 51339;51340;51341;51342;51343;51344;51345;51346;51347;51348;51349;51350 31669;31670;31671;31672;31673;31674;31675;31676;31677;31678;31679 31674 11 CIYVAIGQK Unmodified 1050.5532 0.55320134 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.264 24.233 2 0.00034988 10428 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 139.27 133.79 1030300000 30682000 26983000 20686000 6921200 6220100 0 99839000 91494000 87619000 21217000 18782000 15458000 78667000 81525000 71280000 8901700 7230300 7003200 102670000 95830000 99095000 16353000 16943000 18868000 2630 645 2544 51351;51352;51353;51354;51355;51356;51357;51358;51359;51360;51361;51362;51363;51364;51365;51366;51367;51368;51369;51370;51371;51372;51373 31680;31681;31682;31683;31684;31685;31686;31687;31688;31689;31690;31691;31692;31693;31694;31695;31696;31697;31698 31696 19 CKIEQAPGQHGAR Unmodified 1450.7099 0.70992977 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 1 1 2 1 1 2 2 1 1 1 1 2 2 2 1 10.099 10.762 2;3 5.4921E-24 2491 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 189.3 187.46 683150000 96275000 106390000 99289000 160520 2778400 0 37550000 20107000 25122000 10124000 11961000 18646000 33416000 31010000 7980500 7720900 12141000 12116000 53725000 47774000 42111000 0 0 6759800 2631 375 2545 51374;51375;51376;51377;51378;51379;51380;51381;51382;51383;51384;51385;51386;51387;51388;51389;51390;51391;51392;51393;51394;51395;51396;51397;51398;51399;51400;51401;51402;51403;51404 31699;31700;31701;31702;31703;31704;31705;31706;31707;31708;31709;31710;31711 31709 13 CKPTSPGRR Unmodified 1057.5451 0.54509627 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 8.9963 9.2661 2;3 0.00083338 1735 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 103.56 99.992 57887000 0 0 0 2017000 2217900 1306700 0 0 0 4079600 3965200 4182900 0 0 0 6646700 5447000 5795100 0 0 0 7520400 6171000 8537300 2632 1620 2546 51405;51406;51407;51408;51409;51410;51411;51412;51413;51414;51415;51416;51417;51418;51419;51420;51421;51422;51423;51424;51425 31712;31713;31714;31715;31716;31717;31718;31719;31720;31721;31722 31714 11 CKTEEEIVER Unmodified 1291.6078 0.60781569 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.21 12.967 2 7.1181E-05 3441 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 139.96 127.44 133950000 15612000 11048000 11672000 0 0 2368000 14188000 0 9417000 0 787970 912490 11917000 0 10103000 0 0 0 15189000 15053000 15680000 0 0 0 2633 1880 2547 51426;51427;51428;51429;51430;51431;51432;51433;51434;51435;51436;51437;51438 31723 31723 1 CLAGSEPIPESLK Unmodified 1399.7017 0.70171607 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.536 28.28 2 5.8588E-06 13504 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.71 123.73 376820000 48945000 47068000 44469000 0 0 0 40144000 39030000 36682000 0 0 0 22270000 22410000 18223000 0 0 0 21283000 17562000 18739000 0 0 0 2634 1341 2548 51439;51440;51441;51442;51443;51444;51445;51446;51447;51448;51449;51450 31724;31725;31726;31727;31728;31729;31730;31731;31732;31733 31724 10 CLEAAMDHDKK Unmodified 1316.5853 0.58530611 536 P0A9M0 lon Lon protease yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 2 1 2 2 1 2 2 2 2 2 2 1 1 1 11.363 11.944 2;3 1.7365E-05 2511 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 169.41 169.41 426570000 25361000 25665000 29457000 0 0 1368700 18354000 23801000 23948000 9711700 14637000 2991900 26256000 21108000 6717400 41662000 33644000 38037000 20248000 22437000 24122000 5636200 6135400 5271000 2635 536 2549 51451;51452;51453;51454;51455;51456;51457;51458;51459;51460;51461;51462;51463;51464;51465;51466;51467;51468;51469;51470;51471;51472;51473;51474;51475;51476;51477;51478;51479;51480;51481;51482;51483;51484;51485;51486;51487 31734;31735;31736;31737;31738;31739;31740 31734 6 CLHLQLTEK Unmodified 1140.5961 0.59612879 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 1 2 1 2 2 2 19.443 19.921 2;3 1.2107E-05 7714 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 185.72 172.68 704200000 54854000 22277000 45798000 5027200 4113900 5060500 71715000 69713000 73507000 0 0 0 20151000 48779000 19192000 0 0 0 80123000 80115000 103770000 0 0 0 2636 744 2550 51488;51489;51490;51491;51492;51493;51494;51495;51496;51497;51498;51499;51500;51501;51502;51503;51504;51505;51506;51507;51508;51509;51510;51511 31741;31742;31743;31744;31745;31746;31747;31748;31749;31750;31751;31752;31753;31754;31755;31756;31757;31758;31759;31760;31761;31762;31763;31764 31747 23 CLINPQQYEAMYQQSINVPDTFWGEQGK Unmodified 3343.5278 0.52779781 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.407 53.001 3 3.6934E-08 26278 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 108.49 107.99 172790000 54076000 60491000 58219000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2637 1305 2551 51512;51513;51514 31765;31766;31767 31765 3 CLLCHDAPCSQACPAQTDPGK Unmodified 2384.997 0.99700495 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 1 1 1 18.884 19.335 2;3 1.287E-21 7476 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 159.95 159.95 290530000 0 0 0 0 0 0 53248000 77709000 63953000 2038800 0 0 22515000 19905000 22284000 0 0 0 9102600 11908000 7867700 0 0 0 2638 1861 2552 51515;51516;51517;51518;51519;51520;51521;51522;51523;51524;51525;51526;51527 31768;31769;31770;31771;31772;31773;31774;31775;31776;31777;31778 31769 11 CLLVSYSDKPLGLF Unmodified 1610.8378 0.83781563 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.668 52.209 2 4.6009E-05 25426 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.14 103.9 513670000 157940000 138800000 137180000 1533400 0 1416400 23054000 27808000 25936000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2639 1486 2553 51528;51529;51530;51531;51532;51533;51534;51535 31779;31780;31781 31781 3 CLMFFTPGVPSEFK Unmodified 1658.7837 0.78367156 1945 P77808 yfaY NMN amidohydrolase-like protein YfaY yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 52.835 51.477 2 1.6052E-06 24086 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.01 123.55 62917000 0 0 0 0 0 0 0 10369000 10052000 0 0 0 0 0 12216000 0 0 0 9134600 8406200 12740000 0 0 0 2640 1945 2554 51536;51537;51538;51539;51540;51541 31782;31783;31784 31784 3 CLNGLAAGEYLEGHTSMIR Unmodified 2090.9877 0.98774411 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 38.28 36.645 3 5.5422E-10 17831 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.9 117.8 156760000 53992000 46695000 50671000 0 0 0 0 0 3244900 0 0 0 0 0 0 0 0 0 2161600 0 0 0 0 0 2641 1925 2555 51542;51543;51544;51545;51546 31785;31786 31785 2 CLNPGGIFVAQNGVCFLQQEEAIDSHR Unmodified 3058.4389 0.43892323 207 P09158 speE Polyamine aminopropyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 50.435 49.051 3 1.0909E-22 24159 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.72 167.11 112520000 20762000 22069000 18420000 0 0 0 2997300 0 3431900 0 0 0 6273300 7742400 4561100 0 0 0 7371700 10791000 8098900 0 0 0 2642 207 2556 51547;51548;51549;51550;51551;51552;51553;51554;51555;51556;51557 31787;31788 31787 2 CLQTLLLLAQEEDRQPLQYLNAFVR Unmodified 3030.5961 0.5960758 1782 P75838 ycaO Ribosomal protein S12 methylthiotransferase accessory factor YcaO yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 54.818 53.333 3 4.8693E-05 26232 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.574 68.124 46563000 0 0 0 0 0 0 0 12897000 0 0 0 0 19151000 0 0 0 0 0 0 0 14514000 0 0 0 2643 1782 2557 51558;51559;51560 31789 31789 0 CLSCGNPYCEWK Unmodified 1572.616 0.61595431 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.744 26.597 2 1.1623E-11 12133 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 185.29 185.29 328690000 71668000 62584000 54158000 0 0 0 22304000 19901000 16709000 0 0 0 12180000 11379000 9684700 0 0 0 16923000 16398000 14805000 0 0 0 2644 219 2558 51561;51562;51563;51564;51565;51566;51567;51568;51569;51570;51571;51572 31790;31791;31792;31793;31794;31795;31796;31797;31798;31799;31800;31801 31796 12 CLTHALWR Unmodified 1055.5335 0.53346895 1026 P0AGK8 iscR HTH-type transcriptional regulator IscR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 1 2 20.546 20.723 2;3 0.0032568 5953 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 75.854 75.546 95747000 0 0 0 15132000 11586000 15918000 0 2041200 0 2651600 0 1268600 0 0 0 0 0 0 15233000 13599000 8185600 4628100 5503900 0 2645 1026 2559 51573;51574;51575;51576;51577;51578;51579;51580;51581;51582;51583;51584;51585;51586;51587;51588;51589 31802;31803;31804;31805;31806;31807;31808 31808 7 CLVILSR Unmodified 859.49496 0.49495818 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.283 27.014 2 0.00097355 12263 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.92 136.06 587090000 46721000 50453000 50836000 766800 0 566430 54762000 56956000 50729000 0 0 0 50542000 45935000 47424000 0 0 0 44944000 46667000 39793000 0 0 0 2646 421 2560 51590;51591;51592;51593;51594;51595;51596;51597;51598;51599;51600;51601;51602;51603 31809;31810;31811;31812;31813;31814;31815;31816;31817;31818;31819;31820 31816 9 CLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPR Unmodified 4148.0302 0.030165057 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.731 52.262 4 0.037534 21050 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 37.603 37.198 117230000 0 0 0 0 0 0 0 10984000 0 20658000 19300000 19258000 0 6406000 0 0 0 0 12328000 12376000 0 15918000 0 0 2647 1742 2561 51604;51605;51606;51607;51608;51609;51610;51611 31821 31821 1 CLYCHNR Unmodified 1021.4222 0.42220395 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.846 11.489 2 0.0029824 2691 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 109.88 109.88 153500000 0 0 2458800 0 537640 0 11921000 10133000 14618000 6800900 6350900 3933500 10040000 8897700 9413400 0 0 0 12542000 9230800 5963500 17775000 15029000 7850500 2648 540 2562 51612;51613;51614;51615;51616;51617;51618;51619;51620;51621;51622;51623;51624;51625;51626;51627;51628 31822;31823;31824;31825;31826;31827;31828;31829 31822 8 CMTIPSDQLYLPGHDYVDR Unmodified 2279.0351 0.035088237 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.59 38.781 3 0.0042538 19328 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 49.708 46.564 177980000 21758000 24594000 22629000 765410 693300 0 25365000 26904000 26586000 2110600 2502900 0 3931000 4042600 3496500 0 0 0 0 6340800 6259600 0 0 0 2649 498 2563 51629;51630;51631;51632;51633;51634;51635;51636;51637;51638;51639;51640;51641;51642;51643 31830;31831;31832 31830 2 CNEILGAR Unmodified 931.45455 0.45454993 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 16.205 16.79 2 0.0004528 4592 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 138.24 118.8 53464000 0 0 0 0 0 0 0 0 0 0 0 0 5597200 4292500 0 7598500 6933900 6413700 8125000 6799300 7703700 0 0 0 2650 395 2564 51644;51645;51646;51647;51648;51649;51650;51651 31833;31834 31834 2 CNNEVGNTLTLEQLK Unmodified 1731.8461 0.84614848 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 33.898 32.391 2 7.0261E-15 15852 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 184.03 167.65 115040000 0 0 0 0 0 0 26285000 24233000 23634000 0 0 0 9224300 8411600 9960000 0 0 0 4210200 4491000 4587500 0 0 0 2651 1861 2565 51652;51653;51654;51655;51656;51657;51658;51659;51660 31835;31836;31837;31838 31835 4 CNPLFIATGHR Unmodified 1284.6397 0.63972494 1724 P68739 nfi Endonuclease V yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 24.702 24.037 3 0.16031 10716 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 29.291 21.257 42248000 6904800 6166600 5321500 0 0 0 0 0 6802600 0 0 0 2619800 0 0 2015400 1536000 2161900 4612200 4107500 0 0 0 0 2652 1724 2566 51661;51662;51663;51664;51665;51666;51667;51668;51669;51670 31839 31839 0 CNVVSPGSTDTDMQR Unmodified 1665.7087 0.70866872 1103 P15047 entA 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 17.796 18.472 2 8.4933E-09 6900 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 149.49 147.9 43846000 0 0 0 0 0 0 0 0 3184800 0 0 0 4032300 3938100 3544700 0 0 0 10463000 8368000 10315000 0 0 0 2653 1103 2567 51671;51672;51673;51674;51675;51676;51677 31840;31841;31842;31843 31840 4 CPAIEIPR Unmodified 954.49569 0.49568646 1786 P75874 yccU Uncharacterized protein YccU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.582 24.501 2 0.00070477 10540 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 126.67 108.63 428220000 50418000 42974000 43810000 0 0 0 50519000 55927000 47193000 0 0 0 23830000 22577000 15389000 0 0 0 28254000 25289000 22039000 0 0 0 2654 1786 2568 51678;51679;51680;51681;51682;51683;51684;51685;51686;51687;51688;51689 31844;31845;31846;31847;31848;31849;31850;31851;31852;31853;31854;31855 31853 12 CPDHDVPLAAQTVSQMVDNVLSQPEGK Unmodified 2934.3852 0.38515632 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.952 52.964 3 6.2662E-41 20821 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 203.33 201.25 112560000 10866000 8346400 9187300 0 0 0 0 0 0 0 0 0 5410700 4902800 5743700 15048000 14514000 23426000 0 8267200 6848000 0 0 0 2655 222 2569 51690;51691;51692;51693;51694;51695;51696;51697;51698;51699;51700 31856;31857;31858 31856 3 CPDINKK Unmodified 873.43784 0.43783723 616 P0AAV6 ybgS Uncharacterized protein YbgS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 7.1695 7.902 2 0.0062 1631 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.69 81.136 128120000 47606000 39183000 41335000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2656 616 2570 51701;51702;51703 31859;31860;31861 31859 3 CPEPVMMVR Unmodified 1117.5082 0.50824176 409 P0A890 tusA Sulfurtransferase TusA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.557 24.472 2 0.10596 10730 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 47.849 46.477 121710000 12737000 11509000 10716000 0 0 0 10359000 9040100 8575300 0 0 0 7369600 6431200 7518000 0 0 0 13227000 10894000 13333000 0 0 0 2657 409 2571 51704;51705;51706;51707;51708;51709;51710;51711;51712;51713;51714;51715 31862;31863 31863 0 CPFCDVAHGR Unmodified 1217.507 0.50699621 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 14.187 15.038 2 0.00030511 4647 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 111.74 111.74 29213000 0 4699200 8177700 0 0 0 0 0 0 0 0 0 4957900 4785600 0 0 0 0 0 6592500 0 0 0 0 2658 1628 2572 51716;51717;51718;51719;51720 31864;31865;31866;31867 31866 4 CPFCDVAHGRPVAPDANEPVK Unmodified 2335.0838 0.083769765 1628 P60716 lipA Lipoyl synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 22.172 22.038 3;4 8.3682E-16 9113 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 153.19 144.59 1037200000 85452000 80136000 70581000 18024000 17055000 13112000 60369000 61054000 48577000 4355400 4430900 3606400 67777000 60156000 58372000 0 2179900 2035700 93825000 87691000 102100000 29781000 35009000 31528000 2659 1628 2573 51721;51722;51723;51724;51725;51726;51727;51728;51729;51730;51731;51732;51733;51734;51735;51736;51737;51738;51739;51740;51741;51742;51743;51744;51745;51746;51747;51748;51749;51750;51751;51752;51753;51754;51755;51756;51757;51758;51759;51760 31868;31869;31870;31871;31872;31873;31874;31875;31876;31877;31878;31879;31880;31881;31882;31883;31884;31885;31886;31887;31888;31889;31890;31891;31892;31893;31894;31895 31878 28 CPFCDVAHGRPVAPDANEPVKLAQTIADMALR Unmodified 3518.7221 0.72209772 1628 P60716 lipA Lipoyl synthase yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.115 49.84 5 0.018494 17837 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 41.434 39.832 30139000 0 0 0 3397300 3291100 2923100 0 0 0 0 0 0 2349000 2849100 0 0 0 0 0 0 0 7335700 3632000 4361600 2660 1628 2574 51761;51762;51763;51764;51765;51766;51767;51768 31896;31897 31897 2 CPFHQGGHDQSAGAGTTTR Unmodified 1983.8606 0.86056977 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 10.747 11.563 2;3;4 7.1191E-81 2795 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 323.59 320.55 1551700000 174740000 149370000 143980000 0 0 0 201170000 194510000 211070000 0 0 0 67179000 74421000 85756000 0 0 0 91404000 78221000 79888000 0 0 0 2661 1086 2575 51769;51770;51771;51772;51773;51774;51775;51776;51777;51778;51779;51780;51781;51782;51783;51784;51785;51786;51787;51788;51789;51790;51791;51792;51793;51794;51795;51796;51797;51798;51799;51800;51801;51802;51803;51804 31898;31899;31900;31901;31902;31903;31904;31905;31906;31907;31908;31909;31910;31911;31912;31913;31914;31915;31916;31917;31918;31919;31920;31921;31922;31923;31924;31925;31926;31927;31928;31929;31930;31931;31932 31900 35 CPHAMEICSSAPPLEEFTPGR Unmodified 2385.0552 0.055171753 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.96 36.211 3 1.3858E-05 17574 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.352 87.352 320960000 52994000 45738000 50319000 11054000 11185000 12220000 11109000 12990000 14780000 4159300 3536300 3372700 11631000 12214000 14302000 1371300 0 0 15685000 14289000 14902000 0 3111200 0 2662 1807 2576 51805;51806;51807;51808;51809;51810;51811;51812;51813;51814;51815;51816;51817;51818;51819;51820;51821;51822;51823;51824 31933;31934;31935;31936;31937;31938;31939 31937 7 CPIAGPECAK Unmodified 1101.4947 0.49470019 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.51 14.159 2 0.0030405 3751 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 75.378 72.699 267720000 42034000 43597000 43985000 5650100 5937900 6455200 10063000 11734000 9766100 5000100 4777500 4367200 10107000 7953200 9406800 1111800 0 0 13687000 10827000 12828000 3439500 1927000 3062000 2663 1935 2577 51825;51826;51827;51828;51829;51830;51831;51832;51833;51834;51835;51836;51837;51838;51839;51840;51841;51842;51843;51844;51845;51846 31940;31941;31942;31943;31944;31945;31946;31947 31940 8 CPMELSTYFR Unmodified 1302.5737 0.57367879 1911 P77522 sufB FeS cluster assembly protein SufB yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.529 37.844 2 0.002475 18193 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 83.783 81.975 63745000 7482100 7766300 7967600 0 0 0 7902900 8268400 7256500 0 0 0 2331800 2566800 2072100 0 0 0 4574700 5555900 0 0 0 0 2664 1911 2578 51847;51848;51849;51850;51851;51852;51853;51854;51855;51856;51857 31948 31948 0 CPQINLIDR Unmodified 1127.5757 0.5757277 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.933 26.785 2 0.044324 12032 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 60.019 57.667 278170000 34911000 42559000 32073000 0 0 0 27980000 27561000 24666000 0 0 0 18398000 13253000 11888000 0 0 0 16264000 13431000 15182000 0 0 0 2665 1341 2579 51858;51859;51860;51861;51862;51863;51864;51865;51866;51867;51868;51869 31949;31950;31951 31951 0 CPSPVWMVK Unmodified 1102.5304 0.53035741 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 31.574 30.499 2 0.00044672 13678 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.03 92.661 120250000 23215000 21467000 0 0 0 0 0 9001100 0 0 0 0 16474000 18656000 18117000 0 678810 0 0 0 12643000 0 0 0 2666 585 2580 51870;51871;51872;51873;51874;51875;51876;51877 31952;31953;31954 31954 3 CPVHNYIPNWLK Unmodified 1539.7657 0.76565373 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 34.738 33.316 2;3 2.2026E-06 15739 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143.45 134.02 319160000 92579000 91784000 75040000 0 0 0 17719000 21168000 16294000 0 0 0 0 2489600 2081700 0 0 0 0 0 0 0 0 0 2667 219 2581 51878;51879;51880;51881;51882;51883;51884;51885;51886;51887;51888 31955;31956;31957 31957 1 CPVVDTWWQTETGGFMITPLPGATELK Unmodified 3033.4616 0.46161573 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 55.302 53.896 2 2.3215E-10 26670 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.88 107.76 70649000 20883000 25757000 24009000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2668 1305 2582 51889;51890;51891 31958 31958 1 CQEVIDR Unmodified 918.42292 0.42291545 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By matching By MS/MS 1 1 11.952 12.675 2 0.13581 3567 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 47.349 30.422 29175000 0 1301200 27874000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2669 1107 2583 51892;51893 31959 31959 1 CQLIDLGEWAAEEK Unmodified 1660.7767 0.77667193 431 P0A8H8 yacG DNA gyrase inhibitor YacG yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 48.484 47.147 2 6.1927E-06 23089 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.63 138.31 169320000 21474000 19031000 0 0 0 0 15895000 12232000 12068000 0 0 0 10818000 14586000 7962700 0 0 0 19154000 18735000 17368000 0 0 0 2670 431 2584 51894;51895;51896;51897;51898;51899;51900;51901;51902;51903;51904 31960;31961;31962;31963;31964 31962 5 CQNITAGTNTTLYLK Unmodified 1696.8454 0.8454202 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.955 28.564 2 4.2661E-15 13237 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 191.52 182.82 92399000 25544000 21488000 20617000 0 0 0 4634100 4174500 4255600 0 0 0 0 0 2338500 0 0 0 0 4400600 4946700 0 0 0 2671 405 2585 51905;51906;51907;51908;51909;51910;51911;51912;51913 31965;31966;31967 31966 3 CQQAGLTIER Unmodified 1174.5765 0.57645598 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.569 18.251 2 7.6206E-07 6636 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.23 143.07 960830000 20621000 22407000 19784000 0 0 0 158350000 142180000 136730000 0 0 0 88248000 77377000 88694000 0 0 0 73634000 72351000 60452000 0 0 0 2672 1806 2586 51914;51915;51916;51917;51918;51919;51920;51921;51922;51923;51924;51925 31968;31969;31970;31971;31972;31973 31971 6 CQQIVTSPVLSPEQK Unmodified 1712.8767 0.87672033 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 29.114 27.786 2 9.92E-36 12918 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 262 261.82 246540000 0 0 0 0 0 0 32392000 33121000 35218000 0 0 0 22925000 25153000 26374000 0 0 0 25859000 21844000 23653000 0 0 0 2673 1467 2587 51926;51927;51928;51929;51930;51931;51932;51933;51934 31974;31975;31976;31977;31978;31979;31980;31981;31982 31977 9 CQSTNDAYPTGFR Unmodified 1515.6412 0.64124108 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.398 21.626 2 5.4293E-24 8762 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 238.01 238.01 1348500000 74416000 73683000 60222000 644480 383920 523680 191190000 156920000 165190000 0 0 0 121000000 96471000 113080000 0 0 0 89274000 111320000 91750000 858970 867580 741350 2674 697 2588 51935;51936;51937;51938;51939;51940;51941;51942;51943;51944;51945;51946;51947;51948;51949;51950;51951;51952 31983;31984;31985;31986;31987;31988;31989;31990;31991;31992;31993;31994 31986 12 CQTIDTLER Unmodified 1134.5339 0.53392246 724 P0ACE3 hha Hemolysin expression-modulating protein Hha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.525 18.9 2 0.00025777 7012 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.53 108.49 120410000 8469000 7612600 6894300 0 0 0 10860000 11140000 10980000 2664000 2476900 2305300 4097500 3438200 0 3002400 0 0 12363000 20266000 13837000 0 0 0 2675 724 2589 51953;51954;51955;51956;51957;51958;51959;51960;51961;51962;51963;51964;51965;51966;51967 31995;31996;31997;31998;31999;32000;32001;32002;32003;32004 32002 10 CQVHAGGR Unmodified 883.40827 0.40826844 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 1 2 1 1 6.0074 6.8178 2 0.00043507 1053 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 139.27 131.26 730300000 128180000 111930000 95061000 0 0 0 0 0 100380 0 0 0 52767000 46542000 0 0 0 0 112140000 94876000 88697000 0 0 0 2676 392 2590 51968;51969;51970;51971;51972;51973;51974;51975;51976;51977;51978 32005;32006;32007;32008;32009;32010 32006 6 CRGDDLLGIYADAIR Unmodified 1706.841 0.84100352 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 1 1 1 43.077 41.553 3 0.027141 19550 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 35.329 30.86 72657000 0 4948500 0 0 0 0 9709600 4803700 5226700 0 0 0 7100400 7096500 6649600 0 0 0 8191900 10777000 8152800 0 0 0 2677 1148 2591 51979;51980;51981;51982;51983;51984;51985;51986;51987;51988;51989 32011;32012;32013 32011 0 CRPGMFEYHLEGEIHHEFNR Unmodified 2557.1379 0.1379306 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 1 2 2 2 2 1 2 2 2 2 27.081 25.912 4;5 6.4623E-07 12119 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 75.55 75.294 224710000 28962000 28237000 7235700 0 0 0 27772000 24733000 24967000 0 0 0 15043000 7034000 11346000 0 0 0 22291000 12605000 14483000 0 0 0 2678 1100 2592 51990;51991;51992;51993;51994;51995;51996;51997;51998;51999;52000;52001;52002;52003;52004;52005;52006;52007;52008;52009;52010;52011 32014;32015;32016;32017;32018;32019 32014 5 CRPVGVLK Unmodified 927.53241 0.53240632 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.014 12.802 2 0.0021205 3595 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.61 99.795 1596400000 109430000 118800000 114430000 0 0 0 134100000 132190000 134920000 0 890810 0 137200000 137280000 114810000 0 0 0 147060000 154510000 160770000 0 0 0 2679 325 2593 52012;52013;52014;52015;52016;52017;52018;52019;52020;52021;52022;52023;52024 32020;32021;32022;32023;32024;32025;32026;32027;32028;32029;32030 32023 11 CSDHTAFMYLGELIEFSNTDDLFTKPAKK Unmodified 3377.5948 0.59481475 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 1 2 53.337 52.167 4;5 6.753E-23 21254 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 164.96 163.05 273740000 0 0 0 0 0 0 17154000 10127000 0 68837000 42360000 42713000 0 0 0 3674300 0 22103000 0 0 0 31680000 9243700 25845000 2680 594 2594 52025;52026;52027;52028;52029;52030;52031;52032;52033;52034;52035;52036;52037;52038;52039;52040 32031;32032;32033;32034;32035;32036;32037;32038;32039;32040 32031 10 CSEFGDAIIENM Unmodified 1384.5639 0.56390196 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 52.097 50.892 2 2.3392E-05 25018 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.07 120.07 613760000 218490000 238580000 156690000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2681 179 2595 52041;52042;52043 32041;32042;32043 32041 3 CSEVVVYFK Unmodified 1129.5478 0.54778161 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.937 29.581 2 0.00063782 13761 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.74 117 293030000 27792000 23075000 17180000 0 0 0 31500000 31252000 27246000 0 0 0 18602000 17979000 21089000 0 0 0 28754000 27375000 21186000 0 0 0 2682 702 2596 52044;52045;52046;52047;52048;52049;52050;52051;52052;52053;52054;52055 32044;32045;32046;32047;32048;32049;32050;32051 32048 4 CSIFGVFDIK Unmodified 1184.59 0.58998078 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.465 51.217 2 0.0002603 25423 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 115.71 115.08 446780000 53609000 51871000 46158000 0 0 0 83166000 78883000 83767000 0 0 0 4766000 6019400 6010200 0 0 0 11440000 10052000 11033000 0 0 0 2683 1191 2597 52056;52057;52058;52059;52060;52061;52062;52063;52064;52065;52066;52067 32052;32053;32054;32055;32056;32057;32058 32052 6 CSNCEQSGK Unmodified 1068.3964 0.39644271 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.6964 5.5104 2 0.002288 1033 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 85.67 85.67 26824000 2234500 2302800 2612800 0 0 0 0 0 0 0 0 0 1846300 4803900 2677400 0 0 0 3144400 3036800 4165400 0 0 0 2684 1085 2598 52068;52069;52070;52071;52072;52073;52074;52075;52076 32059;32060;32061;32062;32063;32064 32064 6 CTAPVFEPGGGGINVAR Unmodified 1700.8304 0.83043884 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.203 32.755 2 7.6657E-19 15468 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 190.53 185.83 620100000 56955000 56846000 47536000 0 0 0 92686000 91678000 71801000 0 0 0 29271000 29699000 28109000 0 0 0 39385000 39545000 36591000 0 0 0 2685 145 2599 52077;52078;52079;52080;52081;52082;52083;52084;52085;52086;52087;52088 32065;32066;32067;32068;32069;32070;32071 32069 7 CTAVVADVR Unmodified 989.49641 0.49641475 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 15.593 16.414 2 9.9504E-05 5728 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 136.27 96.165 240200000 0 18136000 15173000 0 0 0 22299000 27535000 24015000 0 0 0 19651000 19522000 21732000 0 0 0 25027000 22883000 24228000 0 0 0 2686 1471 2600 52089;52090;52091;52092;52093;52094;52095;52096;52097;52098;52099 32072;32073;32074;32075;32076;32077 32073 6 CTEEHQAIVR Unmodified 1241.5823 0.58226964 1506 P38521 yggL Uncharacterized protein YggL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 10.983 11.801 2;3 1.0996E-08 2958 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 180.8 174.08 439910000 33686000 103630000 109540000 0 0 0 22614000 23487000 0 0 0 0 24730000 14085000 17800000 0 0 0 36898000 24640000 28806000 0 0 0 2687 1506 2601 52100;52101;52102;52103;52104;52105;52106;52107;52108;52109;52110;52111;52112;52113;52114;52115;52116;52117;52118;52119;52120;52121 32078;32079;32080;32081;32082;32083;32084;32085;32086 32080 9 CTFCIIPSMR Unmodified 1283.5825 0.58246934 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.846 40.143 2 6.6438E-05 19637 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.57 128.61 71139000 5807500 3990800 6052100 714410 585730 0 4574400 5002000 3881600 0 0 0 4801900 4356700 3199700 0 0 0 10558000 9142600 8470900 0 0 0 2688 863 2602 52122;52123;52124;52125;52126;52127;52128;52129;52130;52131;52132;52133;52134;52135 32087;32088;32089;32090;32091;32092 32087 1 CTGGLICGAQR Unmodified 1191.5489 0.54886102 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.245 16.896 2 0.00019201 5533 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 105.52 102.51 134200000 9529400 8360100 6626800 0 0 0 12044000 15396000 10366000 0 0 0 8723100 8335800 8356600 2331500 1876100 1606200 12509000 14419000 13719000 0 0 0 2689 1102 2603 52136;52137;52138;52139;52140;52141;52142;52143;52144;52145;52146;52147;52148;52149;52150 32093;32094;32095;32096 32096 2 CTLPFLHIADATGR Unmodified 1570.7926 0.79259677 81 P03813 ygeA Uncharacterized protein YgeA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 40.699 39.202 3 0.018023 19234 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 42.52 40.158 45379000 8314300 5189000 7164200 0 0 0 0 0 0 0 0 0 2931700 4779100 5651600 0 0 0 4432100 6916900 0 0 0 0 2690 81 2604 52151;52152;52153;52154;52155;52156;52157;52158 32097;32098;32099;32100 32098 0 CTNPQWK Unmodified 932.41744 0.41743614 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 2 1 12.25 13.118 2 0.00063213 3766 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 148.98 142.81 780010000 100610000 84635000 79479000 0 0 1407700 58784000 63001000 58110000 0 0 0 54672000 55860000 46150000 0 0 0 59715000 62604000 54985000 0 0 0 2691 1195 2605 52159;52160;52161;52162;52163;52164;52165;52166;52167;52168;52169;52170;52171;52172;52173 32101;32102;32103;32104;32105;32106;32107;32108;32109;32110;32111 32104 10 CTPNTWVTVSPK Unmodified 1388.6758 0.67583567 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 28.054 26.905 2 0.0006794 12745 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.771 79.189 65221000 0 12950000 15094000 0 0 0 14032000 0 0 0 0 0 0 0 0 0 0 0 0 23145000 0 0 0 0 2692 1685 2606 52174;52175;52176;52177 32112 32112 1 CTQAALALAELCYNTLLEEGEK Unmodified 2496.1876 0.18762571 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.444 52.982 3 0.011542 26224 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 54.235 50.431 124610000 7734300 0 6875400 0 0 0 25937000 17556000 17633000 0 0 0 12871000 12240000 12530000 0 0 0 7479600 3753500 0 0 0 0 2693 554 2607 52178;52179;52180;52181;52182;52183;52184;52185;52186;52187 32113 32113 0 CTQELLFGK Unmodified 1094.543 0.54303059 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.078 27.797 2 9.6162E-08 12638 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 184.38 173.67 1775800000 174110000 200600000 154370000 0 486720 532220 149950000 139930000 144500000 0 0 0 111490000 111800000 107830000 0 0 0 165800000 162430000 151980000 0 0 0 2694 31 2608 52188;52189;52190;52191;52192;52193;52194;52195;52196;52197;52198;52199;52200;52201 32114;32115;32116;32117;32118;32119;32120;32121;32122;32123;32124;32125 32122 12 CTVCTTACPVSR Unmodified 1410.6054 0.60538962 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.613 15.141 2 2.236E-12 5000 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 199.67 195.2 130080000 0 0 0 0 0 0 21272000 23565000 17930000 6650400 6477200 7084600 8696100 8396300 8612100 0 0 0 4967000 5332400 7216700 1397200 1232300 1254100 2695 500 2609 52202;52203;52204;52205;52206;52207;52208;52209;52210;52211;52212;52213;52214;52215;52216 32126;32127;32128;32129;32130;32131;32132;32133;32134;32135;32136;32137 32130 12 CTVQAGLMNPK Unmodified 1217.5897 0.5896632 845 P0AEB7 yoaB RutC family protein YoaB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 2 2 19.773 20.269 2 2.2789E-07 7797 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 163.99 162.1 1187500000 135070000 118080000 108670000 0 0 0 105270000 101960000 98979000 0 0 0 64736000 69976000 67483000 0 0 0 102070000 107080000 108080000 0 0 0 2696 845 2610 52217;52218;52219;52220;52221;52222;52223;52224;52225;52226;52227;52228;52229;52230;52231 32138;32139;32140;32141;32142;32143;32144;32145 32140 8 CVACNLCAVACPVGCISLQK Unmodified 2279.0353 0.035304708 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 1 2 2 2 2 1 1 1 1 2 2 2 41.667 39.738 2;3 1.387E-14 19290 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 203.29 162.81 222390000 6194700 0 0 5004200 4024100 4997700 18370000 20683000 15035000 11027000 14940000 13295000 17793000 17380000 4723100 0 0 0 12946000 10762000 11366000 10417000 13772000 9657200 2697 930 2611 52232;52233;52234;52235;52236;52237;52238;52239;52240;52241;52242;52243;52244;52245;52246;52247;52248;52249;52250;52251;52252;52253;52254;52255;52256;52257;52258;52259;52260;52261;52262 32146;32147;32148;32149;32150;32151;32152;32153;32154;32155;32156;32157;32158;32159;32160;32161;32162 32159 16 CVAMEGLIEEANEVIESTEK Unmodified 2250.0396 0.039564493 1177 P21362 yciF Protein YciF yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 55.389 53.983 3 1.4182E-18 26710 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.93 171.36 143850000 54453000 49668000 39727000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2698 1177 2612 52263;52264;52265 32163;32164 32164 2 CVDTSMGLTPLEGLVMGTR Unmodified 2035.9741 0.97406788 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 54.624 53.172 2;3 1.246E-82 26299 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 339.28 331.18 2004000000 144050000 113980000 22009000 0 0 0 147870000 132200000 142620000 0 0 0 240980000 241620000 256080000 0 0 0 185870000 184470000 192300000 0 0 0 2699 224 2613 52266;52267;52268;52269;52270;52271;52272;52273;52274;52275;52276;52277;52278;52279;52280;52281;52282;52283;52284;52285;52286;52287;52288 32165;32166;32167;32168;32169;32170;32171;32172;32173;32174;32175;32176;32177;32178;32179 32167 15 CVGCLLCGHVCPVGCIELGEVK Unmodified 2515.1514 0.1513971 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 42.502 40.751 3 0.00013273 18981 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 74.047 71.506 169430000 0 0 0 0 0 0 48168000 42610000 33946000 0 0 0 13664000 10908000 11025000 0 0 0 0 4411900 4692700 0 0 0 2700 1276 2614 52289;52290;52291;52292;52293;52294;52295;52296 32180 32180 1 CVGIQNEQLVHHDIIDAIENMK Unmodified 2575.2523 0.25229166 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 44.162 42.647 3;4 3.2374E-28 20037 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 189.44 186.86 3381100000 298380000 348750000 301250000 0 0 0 409620000 337180000 326210000 0 0 0 233970000 181210000 214310000 0 0 0 274130000 240720000 215370000 0 0 0 2701 320 2615 52297;52298;52299;52300;52301;52302;52303;52304;52305;52306;52307;52308;52309;52310;52311;52312;52313;52314;52315;52316;52317;52318;52319;52320 32181;32182;32183;32184;32185;32186;32187;32188;32189;32190;32191;32192;32193;32194;32195;32196;32197;32198;32199;32200;32201;32202 32197 22 CVGVTAGASAPDILVQNVVAR Unmodified 2096.1048 0.10482278 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.754 44.292 2;3 3.7726E-15 21449 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 136.66 128.37 231800000 22611000 15516000 20316000 0 0 0 21965000 13977000 14060000 0 0 0 15010000 17255000 14505000 0 0 0 28222000 23232000 25126000 0 0 0 2702 1650 2616 52321;52322;52323;52324;52325;52326;52327;52328;52329;52330;52331;52332;52333;52334;52335;52336;52337;52338;52339;52340;52341;52342;52343;52344 32203;32204;32205;32206;32207;32208;32209;32210 32207 8 CVIVPNDQMETPHYHVLR Unmodified 2207.0616 0.061577759 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.76 26.521 4 0.0053472 8915 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 46.319 45.629 165600000 20354000 16089000 17496000 3327800 3269000 1794600 12714000 9977600 7541200 0 0 0 9538200 7191800 5533000 0 0 0 13785000 14086000 19316000 1742100 1843100 0 2703 1183 2617 52345;52346;52347;52348;52349;52350;52351;52352;52353;52354;52355;52356;52357;52358;52359;52360;52361 32211 32211 1 CVKPPIVIGDISR Unmodified 1452.8123 0.81226958 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 1 2 1 1 2 30.511 29.147 2;3 4.511E-07 14085 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 104.94 101.61 425750000 25380000 24194000 21494000 0 0 0 100920000 115320000 93037000 0 0 0 6651100 6024300 5841400 0 0 0 6310600 9100400 11479000 0 0 0 2704 1265 2618 52362;52363;52364;52365;52366;52367;52368;52369;52370;52371;52372;52373;52374;52375;52376;52377;52378;52379;52380;52381;52382 32212;32213;32214;32215 32213 4 CVKPPIVIGDISRPAPITVEWAK Unmodified 2545.4091 0.40905029 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 2 2 2 2 1 1 1 1 1 1 43.189 41.592 3;4 5.6709E-10 20586 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 116.45 110.46 281330000 0 9693300 15886000 0 0 0 68589000 77333000 77570000 0 0 0 3742500 3889700 4101800 0 0 0 6275000 5871700 8380600 0 0 0 2705 1265 2619 52383;52384;52385;52386;52387;52388;52389;52390;52391;52392;52393;52394;52395;52396;52397 32216;32217;32218;32219 32217 4 CVLSYGAFPDIANDFGEK Unmodified 2001.9142 0.91422805 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 52.426 50.975 2 5.927E-17 25241 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 159.08 154.01 48233000 0 0 0 0 0 0 16109000 16521000 15603000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2706 722 2620 52398;52399;52400 32220 32220 1 CVNMVADLWHAPAPK Unmodified 1707.8225 0.82251669 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 2 2 38.369 36.565 2;3 1.7841E-11 18006 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.71 162.4 9262800000 1075600000 1043000000 938560000 3665600 2628200 3355700 1917500000 1891300000 1808500000 21769000 22591000 24167000 86511000 76872000 70683000 0 0 0 99345000 101690000 75119000 0 0 0 2707 1755;1756 2621 52401;52402;52403;52404;52405;52406;52407;52408;52409;52410;52411;52412;52413;52414;52415;52416;52417;52418;52419;52420;52421;52422;52423;52424;52425;52426;52427;52428;52429;52430;52431;52432;52433;52434 32221;32222;32223;32224;32225;32226;32227;32228;32229;32230;32231;32232;32233;32234;32235;32236;32237;32238;32239;32240;32241 32231 21 CVNMVADLWHAPAPK Oxidation (M) 1723.8174 0.81743131 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 32.37 30.852 3 0.00017239 15041 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 72.321 67.93 139810000 8277300 14434000 0 0 0 0 64401000 30729000 21965000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2708 1755;1756 2621 52435;52436;52437;52438;52439;52440;52441 32242;32243;32244;32245;32246 32244 604 5 CVSNVAGDGEK Unmodified 1134.4975 0.49753696 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.176 12.009 2 1.263E-10 3022 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 196.52 190.6 893870000 80750000 72196000 89132000 0 0 0 77382000 76016000 76464000 0 0 0 72089000 54589000 57254000 0 0 0 87678000 79411000 70906000 0 0 0 2709 58 2622 52442;52443;52444;52445;52446;52447;52448;52449;52450;52451;52452;52453 32247;32248;32249;32250;32251;32252;32253;32254;32255;32256;32257;32258 32249 12 CVSNVAGDGEKR Unmodified 1290.5986 0.59864799 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 22.662 22.116 3 0.16585 9242 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 10.121 6.278 135510000 12094000 10932000 12255000 0 0 0 22342000 18659000 0 0 0 0 11677000 0 0 0 0 0 17713000 15007000 14833000 0 0 0 2710 58 2623 52454;52455;52456;52457;52458;52459;52460;52461;52462 32259;32260;32261;32262 32261 4 CVTPESINQIALLQVR Unmodified 1839.9877 0.98766776 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 2 2 2 2 48.121 46.699 2;3 4.6606E-11 23226 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 209.8 203.82 405020000 12122000 12282000 10984000 0 0 0 46277000 49177000 46559000 0 0 6747500 43470000 41968000 39140000 0 0 0 33968000 32961000 29365000 0 0 0 2711 1468 2624 52463;52464;52465;52466;52467;52468;52469;52470;52471;52472;52473;52474;52475;52476;52477;52478;52479;52480;52481;52482;52483;52484;52485 32263;32264;32265;32266;32267;32268;32269;32270;32271;32272;32273 32263 10 CWAFWQGYK Unmodified 1244.5437 0.54369929 1456 P37095 pepB Peptidase B yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.13 42.615 2 0.00026055 20777 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.29 121.29 299280000 16153000 14668000 12857000 0 0 0 32296000 28591000 26762000 0 0 0 29324000 25476000 27260000 0 0 0 32334000 27335000 26220000 0 0 0 2712 1456 2625 52486;52487;52488;52489;52490;52491;52492;52493;52494;52495;52496;52497 32274;32275;32276;32277;32278;32279;32280;32281;32282 32278 9 CWHYTQDVGK Unmodified 1292.5608 0.56080592 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 15.169 15.996 2;3 6.4101E-13 5137 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 241.94 240.53 1120300000 126920000 116370000 104910000 252850 273540 405550 93759000 93965000 83936000 0 0 0 62424000 52011000 60894000 0 0 0 109740000 103170000 111280000 0 0 0 2713 58 2626 52498;52499;52500;52501;52502;52503;52504;52505;52506;52507;52508;52509;52510;52511;52512;52513;52514;52515;52516;52517;52518;52519;52520;52521;52522;52523;52524 32283;32284;32285;32286;32287;32288;32289;32290;32291;32292;32293;32294;32295;32296;32297;32298;32299;32300;32301;32302;32303;32304 32300 22 CYEPQALLNK Unmodified 1234.6016 0.6016081 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 26.793 25.751 2 0.006456 11630 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 67.277 63.419 12517000 0 2889700 0 0 0 0 0 0 0 0 0 0 0 1785700 0 0 0 0 4632300 0 3209300 0 0 0 2714 1116 2627 52525;52526;52527;52528 32305 32305 0 CYGPSATSEK Unmodified 1098.4652 0.4651742 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.559 12.436 2 0.00013042 3158 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 127.68 113.01 125550000 0 0 0 0 0 0 8994600 9980400 11132000 0 0 0 14333000 14978000 14163000 0 0 0 17554000 18714000 15700000 0 0 0 2715 38 2628 52529;52530;52531;52532;52533;52534;52535;52536;52537 32306;32307;32308;32309;32310;32311;32312;32313 32311 8 CYLETTAFLK Unmodified 1244.6111 0.61111015 1527 P39337 yjgM Uncharacterized N-acetyltransferase YjgM yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.748 36.075 2 0.060013 17544 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.39 39.33 64177000 8905500 7406000 6319100 0 0 0 5721600 5175700 6407100 0 0 0 2318500 2715600 3469000 0 0 0 5671800 4595200 5472300 0 0 0 2716 1527 2629 52538;52539;52540;52541;52542;52543;52544;52545;52546;52547;52548;52549 32314;32315 32314 2 DAAAAVGK Unmodified 701.3708 0.37080353 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 2 1 1 1 1 1 1 1 1 1 1 1 3 1 2 1 1 2 3 2 1 1 1 11.021 11.655 2 0.010005 2371 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 79.116 20.135 4288200000 682330000 504250000 462300000 16520000 15812000 16155000 199540000 180650000 191760000 24679000 22164000 25717000 231290000 225780000 214100000 22624000 31839000 29233000 383490000 392040000 355810000 20975000 20383000 18791000 2717 1031 2630 52550;52551;52552;52553;52554;52555;52556;52557;52558;52559;52560;52561;52562;52563;52564;52565;52566;52567;52568;52569;52570;52571;52572;52573;52574;52575;52576;52577;52578;52579;52580;52581;52582;52583 32316;32317;32318;32319;32320;32321;32322;32323;32324;32325;32326;32327 32316 6 DAAAMINAAK Unmodified 974.48552 0.48551571 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 22.733 22.262 2 0.053931 9444 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 53.753 40.764 127810000 35620000 31171000 39311000 0 0 0 0 7186000 0 0 0 0 0 0 0 0 0 0 0 14526000 0 0 0 0 2718 173 2631 52584;52585;52586;52587;52588 32328;32329 32329 0 DAADHIYLSQDLGMR Unmodified 1703.7937 0.79371898 472 P0A8Y3 yihX Alpha-D-glucose-1-phosphate phosphatase YihX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 36.009 34.456 2;3 4.2446E-15 16515 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 236.16 228.22 458170000 56763000 64318000 52391000 0 0 0 51768000 48505000 56675000 0 0 0 34376000 32197000 31556000 0 0 0 0 0 29624000 0 0 0 2719 472 2632 52589;52590;52591;52592;52593;52594;52595;52596;52597;52598;52599;52600;52601;52602;52603;52604;52605;52606;52607;52608 32330;32331;32332;32333;32334;32335;32336;32337;32338;32339;32340;32341;32342 32335 9 DAADYVR Unmodified 808.37153 0.37153181 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 14.978 15.792 1;2 0.00054276 5244 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.03 111.85 720680000 121060000 119140000 102120000 0 625970 477390 27769000 31663000 29738000 0 0 0 42914000 34771000 41749000 0 0 0 56835000 55890000 55931000 0 0 0 2720 104 2633 52609;52610;52611;52612;52613;52614;52615;52616;52617;52618;52619;52620;52621;52622;52623;52624;52625 32343;32344;32345;32346;32347 32345 5 DAAFWAEQR Unmodified 1092.4989 0.49885759 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 31.717 30.41 2 0.0011519 14386 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.853 88.443 74433000 2176800 4030100 2721000 0 0 0 0 3897500 3975600 0 0 0 7065700 7195000 6557900 0 0 0 11564000 14347000 10903000 0 0 0 2721 1070 2634 52626;52627;52628;52629;52630;52631;52632;52633;52634;52635;52636 32348;32349;32350;32351 32348 4 DAAGHELVYTGMSK Unmodified 1477.6871 0.68712864 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 1 22.141 22.109 2;3 1.6103E-57 8967 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 272.97 246.45 2242600000 228650000 117100000 169180000 875720 582290 720130 178590000 183910000 193630000 0 702290 0 167720000 164600000 180640000 0 0 0 217630000 218240000 219430000 0 395980 0 2722 170 2635 52637;52638;52639;52640;52641;52642;52643;52644;52645;52646;52647;52648;52649;52650;52651;52652;52653;52654;52655;52656;52657;52658;52659;52660;52661;52662;52663;52664;52665;52666 32352;32353;32354;32355;32356;32357;32358;32359;32360;32361;32362;32363;32364;32365;32366 32359 15 DAAGNTALR Unmodified 887.44609 0.44609374 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.12 12.726 2 1.2258E-05 2641 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 163.67 128.78 1968400000 104370000 114250000 109050000 11342000 11566000 12281000 194900000 184100000 178580000 15291000 12596000 10720000 139460000 125240000 110010000 3856200 4462800 4030800 200690000 206330000 176490000 13246000 12026000 13503000 2723 1409 2636 52667;52668;52669;52670;52671;52672;52673;52674;52675;52676;52677;52678;52679;52680;52681;52682;52683;52684;52685;52686;52687;52688;52689;52690 32367;32368;32369;32370;32371;32372;32373;32374;32375;32376;32377;32378;32379;32380;32381;32382;32383 32381 17 DAAHLAALESK Unmodified 1124.5826 0.58258722 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 17.908 18.532 2;3 0.00010768 6777 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.479 80.557 540030000 121980000 133980000 121540000 0 0 0 17893000 10979000 0 0 0 0 20094000 20371000 15754000 0 0 0 25801000 26762000 24879000 0 0 0 2724 1107 2637 52691;52692;52693;52694;52695;52696;52697;52698;52699;52700;52701;52702;52703;52704;52705;52706;52707;52708;52709;52710;52711 32384;32385;32386;32387;32388;32389;32390;32391;32392;32393 32389 10 DAALEDSIAR Unmodified 1059.5197 0.51965261 1782 P75838 ycaO Ribosomal protein S12 methylthiotransferase accessory factor YcaO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 23.751 22.77 2 0.00029948 9414 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 99.802 84.14 265670000 0 0 0 0 0 0 38798000 39444000 38415000 0 0 0 0 0 0 0 0 0 67549000 81465000 0 0 0 0 2725 1782 2638 52712;52713;52714;52715;52716;52717;52718;52719;52720 32394;32395;32396;32397;32398;32399;32400;32401;32402 32402 9 DAALIAAAQK Unmodified 970.54475 0.54474515 1177 P21362 yciF Protein YciF yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.571 21.585 2 0.0019852 8677 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 81.548 56.625 537930000 166910000 163740000 128410000 1470000 1911700 1724600 8789300 10244000 8755100 2668500 1384800 0 12144000 14091000 0 5428200 4965800 5289000 0 0 0 0 0 0 2726 1177 2639 52721;52722;52723;52724;52725;52726;52727;52728;52729;52730;52731;52732;52733;52734;52735;52736 32403;32404;32405;32406 32405 1 DAALIGEVVER Unmodified 1170.6245 0.62445203 1240 P24193 hypE Hydrogenase isoenzymes formation protein HypE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 36.789 34.96 2 0.0019878 13908 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 74.841 50.686 70983000 0 7699600 0 0 0 0 0 12901000 11669000 2914600 0 1910300 0 0 2043700 0 0 0 11662000 9702500 10479000 0 0 0 2727 1240 2640 52737;52738;52739;52740;52741;52742;52743;52744;52745 32407 32407 1 DAALSCDQFFVNHR Unmodified 1678.7522 0.75218852 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 32.355 30.978 2;3 1.3708E-26 15014 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 241.03 239.37 7635500000 1043800000 1035400000 1003100000 22132000 22238000 21221000 296470000 295030000 290740000 74823000 87217000 89161000 401430000 376230000 372610000 80472000 52690000 56816000 612050000 609950000 600780000 72456000 61670000 56972000 2728 373 2641 52746;52747;52748;52749;52750;52751;52752;52753;52754;52755;52756;52757;52758;52759;52760;52761;52762;52763;52764;52765;52766;52767;52768;52769;52770;52771;52772;52773;52774;52775;52776;52777;52778;52779;52780;52781;52782;52783;52784;52785;52786;52787;52788;52789;52790;52791;52792;52793 32408;32409;32410;32411;32412;32413;32414;32415;32416;32417;32418;32419;32420;32421;32422;32423;32424;32425;32426;32427;32428;32429;32430;32431;32432;32433;32434;32435;32436;32437;32438;32439;32440;32441;32442;32443;32444;32445;32446;32447;32448;32449;32450;32451;32452;32453 32419 46 DAAPDATFR Unmodified 962.44576 0.44575938 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.342 18.813 2 0.00028218 6799 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 119.41 107.69 731440000 35877000 28269000 21035000 4002400 6275400 6043300 61031000 59790000 57642000 15246000 10557000 0 50968000 50635000 52092000 0 0 0 96330000 78253000 84813000 5516200 0 7070600 2729 1427 2642 52794;52795;52796;52797;52798;52799;52800;52801;52802;52803;52804;52805;52806;52807;52808;52809;52810;52811;52812 32454;32455;32456;32457;32458;32459;32460;32461;32462;32463;32464;32465;32466;32467;32468 32466 14 DAAQTDAEVMQHVMDVR Unmodified 1914.8564 0.85639559 1795 P75954 ycfS Probable L,D-transpeptidase YcfS yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.037 38.394 3 5.6145E-09 18549 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 100.35 95.736 64664000 0 0 0 0 0 0 0 0 1944300 0 0 0 0 5375100 6243500 0 0 0 18021000 17666000 15413000 0 0 0 2730 1795 2643 52813;52814;52815;52816;52817;52818;52819 32469;32470;32471;32472 32471 4 DAASFAPLHNPAHLIGIEEALK Unmodified 2313.2117 0.2117307 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 1 3 3 3 2 2 2 3 3 3 2 2 3 3 3 3 1 1 44.255 42.835 2;3;4 1.4886E-52 20917 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 299.79 295.24 17695000000 967680000 1019300000 937610000 7181800 0 3896400 1703300000 1694900000 1646300000 8326100 5317500 7411500 1963500000 1584200000 1464800000 9902400 11557000 12455000 1589600000 1591000000 1460500000 2259000 0 3624100 2731 224 2644 52820;52821;52822;52823;52824;52825;52826;52827;52828;52829;52830;52831;52832;52833;52834;52835;52836;52837;52838;52839;52840;52841;52842;52843;52844;52845;52846;52847;52848;52849;52850;52851;52852;52853;52854;52855;52856;52857;52858;52859;52860;52861;52862;52863;52864;52865;52866;52867;52868;52869;52870;52871;52872;52873 32473;32474;32475;32476;32477;32478;32479;32480;32481;32482;32483;32484;32485;32486;32487;32488;32489;32490;32491;32492;32493;32494;32495;32496;32497;32498;32499;32500;32501;32502;32503;32504;32505;32506;32507;32508;32509;32510;32511;32512 32488 40 DAASVHGESGMAGYDFVEHNR Unmodified 2247.9603 0.96034339 1200 P22564 rihC Non-specific ribonucleoside hydrolase RihC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.391 24.302 3;4 4.4483E-28 10711 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.22 192.22 642620000 129900000 101090000 106240000 0 0 0 39403000 38637000 46879000 0 0 0 26747000 20967000 22640000 0 0 0 32596000 40394000 37115000 0 0 0 2732 1200 2645 52874;52875;52876;52877;52878;52879;52880;52881;52882;52883;52884;52885;52886;52887;52888;52889;52890;52891;52892;52893;52894;52895;52896;52897 32513;32514;32515;32516;32517;32518;32519;32520;32521;32522;32523;32524 32522 12 DAAVARAVDLSAEK Unmodified 1414.7416 0.74160705 816 P0ADX1 yhfA Protein YhfA yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 13.858 14.705 3 0.15144 4700 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 14.228 5.3383 63189000 11415000 12438000 9559400 0 0 0 4334700 6650600 0 0 0 0 0 1948500 2974600 0 0 0 6284400 0 7583400 0 0 0 2733 816 2646 52898;52899;52900;52901;52902;52903;52904;52905;52906 32525 32525 1 DAAYHFQGDADNDQLSVTPLVGLGK Unmodified 2630.2613 0.26125966 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.688 45.132 3 2.1149E-07 22056 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 108.77 105.62 144270000 30425000 26272000 25119000 1540100 1922700 2138900 10208000 7870300 8922100 0 3052200 3031800 0 6686200 0 0 0 0 9287000 7790100 0 0 0 0 2734 1213 2647 52907;52908;52909;52910;52911;52912;52913;52914;52915;52916;52917;52918;52919;52920 32526;32527;32528 32527 3 DACLLPLLR Unmodified 1069.5954 0.59540051 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 50.788 49.451 2 0.00022267 24282 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 124.59 115.65 176360000 13373000 12406000 11178000 0 0 0 13184000 16553000 13363000 0 0 535490 15243000 13700000 13352000 0 0 0 17242000 16701000 19527000 0 0 0 2735 35 2648 52921;52922;52923;52924;52925;52926;52927;52928;52929;52930;52931;52932;52933 32529;32530;32531;32532;32533;32534;32535;32536;32537;32538;32539;32540 32535 12 DACNEALR Unmodified 947.41308 0.41307905 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.455 13.024 2 0.000847 3792 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.65 107.6 406200000 107150000 83023000 88942000 0 0 0 23716000 0 26067000 2677100 2921600 2387900 0 0 0 0 964820 0 28291000 20025000 20039000 0 0 0 2736 405 2649 52934;52935;52936;52937;52938;52939;52940;52941;52942;52943;52944;52945 32541;32542;32543;32544;32545 32543 5 DADAIYANPLLAHLPAVQNK Unmodified 2133.1219 0.12185306 870 P0AEL6 fepB Ferrienterobactin-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 48.636 47.307 3 4.3129E-10 23032 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 112.3 107.75 166960000 14821000 15004000 13638000 0 0 2293600 9219800 10673000 8111200 0 0 0 13900000 9651700 11472000 0 0 0 20880000 20383000 16917000 0 0 0 2737 870 2650 52946;52947;52948;52949;52950;52951;52952;52953;52954;52955;52956;52957;52958 32546;32547;32548;32549;32550;32551;32552;32553;32554;32555 32547 10 DADDLFDKLGI Unmodified 1220.5925 0.5924832 1974 Q47150 dinJ Antitoxin DinJ yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 55.229 53.91 2 0.10954 19773 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 43.083 38.118 7655000 0 0 0 2805700 2029100 2820100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2738 1974 2651 52959;52960;52961 32556 32556 1 DADELLAILASK Unmodified 1257.6816 0.68163256 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 54.999 53.536 2;3 1.9187E-06 26331 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.27 138.48 5996400000 12104000 12922000 9648500 596880 560700 0 564360000 478500000 525150000 0 0 0 708830000 600370000 716460000 0 0 0 801160000 735480000 825630000 1434700 1432400 1748000 2739 1324 2652 52962;52963;52964;52965;52966;52967;52968;52969;52970;52971;52972;52973;52974;52975;52976;52977;52978;52979;52980;52981;52982;52983;52984;52985;52986;52987 32557;32558;32559;32560;32561;32562;32563;32564;32565;32566 32560 10 DADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLK Unmodified 4502.3009 0.30094622 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 2 2 1 1 1 1 1 2 2 2 1 1 1 1 53.348 52.017 4;5 0.14763 18986 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 3.9532 2.7751 237370000 12150000 3412900 17319000 33185000 29315000 22760000 0 4928300 0 11366000 10932000 9088000 17128000 23831000 15297000 3615700 0 0 5300000 0 0 0 9985800 7761700 2740 1256 2653 52988;52989;52990;52991;52992;52993;52994;52995;52996;52997;52998;52999;53000;53001;53002;53003;53004;53005;53006;53007;53008;53009;53010 32567;32568 32568 2 DADGTTR Unmodified 734.3195 0.31949624 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 2 1 1 1 4.3184 5.2495 2 0.0063618 804 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 95.793 69.684 76478000 0 0 0 736090 0 0 0 0 0 0 0 0 16958000 14258000 15480000 0 0 0 11700000 9258400 8087400 0 0 0 2741 25 2654 53011;53012;53013;53014;53015;53016;53017;53018 32569;32570;32571;32572 32571 4 DADLQAICSMGINLFR Unmodified 1822.8706 0.87058909 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 55.192 53.723 2;3 2.7069E-19 26355 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 266.26 262.5 1090600000 78602000 85084000 70866000 0 1951100 0 92873000 85934000 75223000 0 0 2639500 106720000 87515000 78874000 0 0 0 108400000 107090000 108790000 0 0 0 2742 60 2655 53019;53020;53021;53022;53023;53024;53025;53026;53027;53028;53029;53030;53031;53032;53033;53034;53035;53036;53037;53038;53039;53040;53041;53042;53043;53044 32573;32574;32575;32576;32577;32578;32579;32580;32581;32582;32583;32584 32579 12 DADNLESAQQAK Unmodified 1288.5895 0.58952309 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.102 13.85 2 7.974E-12 4212 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 190.88 184.85 619690000 42361000 28966000 29596000 1626800 1844400 1426500 128090000 135200000 142140000 9230500 7696600 7588600 24830000 22938000 18481000 0 0 0 17670000 0 0 0 0 0 2743 522 2656 53045;53046;53047;53048;53049;53050;53051;53052;53053;53054;53055;53056;53057;53058;53059;53060 32585;32586;32587;32588;32589;32590;32591;32592;32593 32593 8 DADNLLQHR Unmodified 1080.5312 0.53122035 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 15.945 16.761 2;3 3.1225E-11 5852 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 210.26 186.3 460140000 53357000 55357000 54127000 0 0 0 72104000 81418000 91292000 0 0 0 9295600 7836300 7366400 0 0 0 11632000 8913000 7438400 0 0 0 2744 498 2657 53061;53062;53063;53064;53065;53066;53067;53068;53069;53070;53071;53072;53073;53074;53075;53076;53077;53078;53079;53080;53081;53082;53083;53084 32594;32595;32596;32597;32598;32599;32600;32601;32602;32603;32604;32605;32606 32599 12 DADTLLEVSETSK Unmodified 1406.6777 0.67766939 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 34.556 33.246 2 3.3561E-09 15863 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 173.71 169.41 469480000 113230000 105760000 97294000 0 0 0 0 0 0 0 0 0 66820000 0 67466000 0 0 0 8722700 0 10190000 0 0 0 2745 1375 2658 53085;53086;53087;53088;53089;53090;53091 32607;32608;32609;32610 32609 3 DADTLLEVSETSKR Unmodified 1562.7788 0.77878042 1375 P31663 panC Pantothenate synthetase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 26.927 25.857 3 0.13988 11685 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 27.734 26.355 40608000 0 8808100 6328700 371550 0 0 0 0 4922100 0 0 0 4853000 4168100 2863900 0 0 0 0 8293000 0 0 0 0 2746 1375 2659 53092;53093;53094;53095;53096;53097;53098;53099 32611 32611 0 DADVDGALAASVFHK Unmodified 1514.7365 0.73652168 1627 P60664 hisF Imidazole glycerol phosphate synthase subunit HisF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.353 35.68 3 4.0454E-07 17356 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.439 93.725 169460000 22788000 20751000 15752000 0 0 0 16245000 13562000 15802000 0 0 0 13026000 11083000 6623000 0 0 0 12939000 11894000 8991400 0 0 0 2747 1627 2660 53100;53101;53102;53103;53104;53105;53106;53107;53108;53109;53110;53111 32612;32613;32614;32615;32616;32617;32618 32613 7 DAEALYGLLK Unmodified 1091.5863 0.58627561 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.108 45.566 2 0.00042641 22638 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.83 70.036 309080000 24193000 24308000 21940000 0 0 0 34234000 28970000 27679000 2871200 2950400 3012500 20531000 18663000 19966000 0 0 0 25927000 26514000 24270000 0 1832700 1219800 2748 1052 2661 53112;53113;53114;53115;53116;53117;53118;53119;53120;53121;53122;53123;53124;53125;53126;53127;53128 32619;32620;32621;32622;32623;32624;32625 32620 6 DAEALYGLLKEEMGEILAK Unmodified 2092.0762 0.076207996 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 2 1 1 1 55.77 54.478 3 1.6991E-17 21053 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 127.5 122.88 414550000 18181000 18119000 15747000 10094000 9205700 4819200 17768000 18673000 16404000 28676000 31520000 31677000 12407000 13723000 12579000 14257000 30301000 21506000 84236 122740 20928000 23971000 19727000 24065000 2749 1052 2662 53129;53130;53131;53132;53133;53134;53135;53136;53137;53138;53139;53140;53141;53142;53143;53144;53145;53146;53147;53148;53149;53150;53151;53152;53153;53154;53155;53156;53157;53158;53159 32626;32627;32628;32629;32630;32631;32632;32633;32634 32628 9 DAEANAEADR Unmodified 1060.4421 0.44213057 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.789 11.379 2 3.5503E-17 2194 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 239.13 239.13 4460500000 307250000 294750000 266940000 13104000 13359000 10421000 384360000 409450000 405620000 68278000 53905000 52052000 293100000 282520000 243960000 8247700 8550300 6751200 493860000 386720000 412730000 15490000 15413000 13646000 2750 293 2663 53160;53161;53162;53163;53164;53165;53166;53167;53168;53169;53170;53171;53172;53173;53174;53175;53176;53177;53178;53179;53180;53181;53182;53183 32635;32636;32637;32638;32639;32640;32641;32642;32643;32644;32645;32646;32647;32648;32649;32650;32651;32652;32653;32654;32655;32656 32640 22 DAEANAEADRK Unmodified 1188.5371 0.53709359 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 3 6.4765 7.2274 2;3 3.2046E-14 1166 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 213.24 208.83 1247700000 48199000 50328000 56779000 0 1994700 1171900 142730000 128980000 129290000 30806000 38791000 28451000 96656000 92092000 82542000 0 0 0 116050000 108100000 94752000 0 0 0 2751 293 2664 53184;53185;53186;53187;53188;53189;53190;53191;53192;53193;53194;53195;53196;53197;53198;53199;53200;53201;53202;53203;53204;53205;53206;53207;53208;53209;53210;53211;53212;53213 32657;32658;32659;32660;32661;32662;32663;32664;32665;32666;32667;32668;32669;32670;32671;32672;32673;32674;32675;32676;32677;32678 32664 22 DAEANAEADRKFEELVQTR Unmodified 2191.0505 0.050538606 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 1 2 2 2 2 2 3 31.068 29.535 2;3;4 4.2438E-23 11226 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 172.37 163.87 1344800000 0 0 0 75516000 80129000 71743000 0 0 0 243090000 251910000 285220000 2832800 0 0 25427000 23899000 25709000 0 0 0 80698000 84795000 93869000 2752 293 2665 53214;53215;53216;53217;53218;53219;53220;53221;53222;53223;53224;53225;53226;53227;53228;53229;53230;53231;53232;53233;53234;53235;53236;53237;53238;53239;53240;53241;53242;53243;53244;53245 32679;32680;32681;32682;32683;32684;32685;32686;32687;32688;32689;32690;32691;32692;32693;32694;32695;32696;32697;32698;32699;32700;32701;32702;32703;32704;32705 32690 27 DAEAWFNEK Unmodified 1108.4825 0.48253882 13 CON__P13645;CON__Q7Z3Y7;CON__Q7Z3Y8;CON__Q148H6;CON__Q7Z3Z0 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.179 31.697 2 1.6488E-05 10780 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 157.86 143.95 609530000 0 0 0 21024000 19632000 20975000 0 0 0 38336000 35309000 36445000 0 0 0 55175000 29844000 39114000 0 0 0 103290000 105540000 104840000 + 2753 13 2666 53246;53247;53248;53249;53250;53251;53252;53253;53254;53255;53256;53257 32706;32707;32708;32709;32710;32711;32712;32713;32714;32715;32716;32717 32707 12 DAEEWFFTK Unmodified 1171.5186 0.51858998 6 CON__P02533;CON__Q6IFX2 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 47.073 45.236 2 0.00014849 18132 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 131.06 129.09 58494000 0 0 0 853130 0 1640800 0 0 0 14403000 14243000 11960000 0 0 0 0 0 0 0 0 0 4594300 4856900 5942100 + 2754 6 2667 53258;53259;53260;53261;53262;53263;53264;53265 32718;32719;32720 32719 3 DAEFLFTSMQQAFVK Unmodified 1760.8444 0.84435757 812 P0ADV5 yhbW Uncharacterized protein YhbW yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 55.168 53.693 2 0.00038087 26451 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 71.153 63.788 78005000 13087000 0 10598000 0 0 0 7134000 8019900 0 0 0 0 5403500 6061100 0 0 0 0 9608700 8518300 9574400 0 0 0 2755 812 2668 53266;53267;53268;53269;53270;53271;53272;53273;53274 32721 32721 1 DAEGNITTIFCTYDADTLSK Unmodified 2234.0049 0.004893546 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 51.771 50.433 2;3;6 5.4451E-46 25470 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 261.35 259.23 382680000 21592000 19757000 26082000 0 0 12874000 33095000 31996000 27635000 0 0 0 32191000 36858000 41089000 0 0 0 36187000 34591000 28732000 0 0 0 2756 63 2669 53275;53276;53277;53278;53279;53280;53281;53282;53283;53284;53285;53286;53287;53288;53289;53290;53291;53292;53293;53294;53295;53296;53297;53298;53299 32722;32723;32724;32725;32726;32727;32728;32729;32730;32731;32732;32733 32725 10 DAEGNITTIFCTYDADTLSKDPADGR Unmodified 2845.2712 0.271232 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.84 48.434 3 4.7862E-23 22857 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 177.7 177.7 291460000 21689000 18650000 17364000 0 0 0 23143000 24795000 21336000 0 0 0 20789000 25690000 22377000 0 0 0 36855000 31190000 27583000 0 0 0 2757 63 2670 53300;53301;53302;53303;53304;53305;53306;53307;53308;53309;53310;53311 32734;32735;32736;32737;32738;32739;32740 32738 7 DAEILLEHVTGR Unmodified 1351.7096 0.70957864 718 P0ACC1 prmC Release factor glutamine methyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 36.204 34.629 3 0.0085716 16068 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 56.951 50.719 40807000 0 4196800 3383600 0 0 0 3829500 5908300 3485200 0 0 0 3494600 4009100 3516300 0 0 0 2561600 2649900 3772000 0 0 0 2758 718 2671 53312;53313;53314;53315;53316;53317;53318;53319;53320;53321;53322 32741;32742 32742 2 DAEIPVFLLDR Unmodified 1286.6871 0.68705229 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.306 52.843 2 0.0029917 26168 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.726 64.47 609690000 194320000 192980000 180120000 0 0 0 8730900 6945800 6087900 0 0 0 5958300 0 6334600 0 0 0 0 0 8218300 0 0 0 2759 1525 2672 53323;53324;53325;53326;53327;53328;53329;53330;53331 32743 32743 0 DAELLAR Unmodified 786.42357 0.42356738 1138 P17411 chbF 6-phospho-beta-glucosidase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 20.034 20.452 2 0.0071951 7677 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 92.319 42.2 36579000 0 0 0 0 0 0 4947700 6496400 3934400 0 0 0 6950500 6288600 5959800 0 0 0 2002000 0 0 0 0 0 2760 1138 2673 53332;53333;53334;53335;53336;53337;53338 32744;32745;32746 32744 3 DAENNRPLFEFLGLTVGINLPGMPAPAK Unmodified 2980.5481 0.54806297 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.699 54.26 3 7.1526E-08 21933 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 105.46 103.48 336160000 16741000 17871000 13444000 2938800 2034000 2711200 21881000 22975000 19489000 20256000 22304000 26843000 15768000 15269000 12049000 0 0 0 25526000 24111000 22348000 14062000 7451400 10090000 2761 1057 2674 53339;53340;53341;53342;53343;53344;53345;53346;53347;53348;53349;53350;53351;53352;53353;53354;53355;53356;53357;53358;53359 32747;32748 32748 2 DAENNRPLFEFLGLTVGINLPGMPAPAKR Unmodified 3136.6492 0.649174 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 2 By matching By matching By MS/MS 1 1 1 55.863 55.033 3 0.0026732 20756 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 46.668 44.315 33417000 0 0 0 578100 0 287100 0 0 0 0 0 0 0 0 0 0 0 32552000 0 0 0 0 0 0 2762 1057 2675 53360;53361;53362 32749 32749 1 DAENTMR Unmodified 835.34942 0.34941616 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.519 11.334 2 0.0034949 2751 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.74 96.928 200060000 15802000 11477000 14772000 0 0 0 14903000 15278000 13185000 0 0 0 23151000 18309000 266830 0 0 0 26622000 24045000 22252000 0 0 0 2763 1133 2676 53363;53364;53365;53366;53367;53368;53369;53370;53371;53372;53373;53374 32750;32751;32752 32752 3 DAETWFLSK Unmodified 1095.5237 0.52367535 12 CON__P08779 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.748 41.486 2 0.0012356 16630 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 89.698 86.843 21077000 0 0 0 0 0 0 0 0 0 5337600 6293000 7027500 0 0 0 0 0 0 0 0 0 907620 574180 937370 + 2764 12 2677 53375;53376;53377;53378;53379;53380 32753;32754;32755 32754 3 DAEVVLVEGLVPTR Unmodified 1495.8246 0.8246084 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 1 2 2 3 2 2 2 51.266 49.982 2;3 9.9742E-20 23504 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 215.46 208.08 3774300000 50210000 44282000 42154000 0 0 0 453600000 405210000 398170000 0 36067000 8363600 416410000 433280000 424540000 0 0 0 359340000 371270000 331440000 0 0 0 2765 539 2678 53381;53382;53383;53384;53385;53386;53387;53388;53389;53390;53391;53392;53393;53394;53395;53396;53397;53398;53399;53400;53401;53402;53403;53404;53405 32756;32757;32758;32759;32760;32761;32762;32763;32764;32765;32766;32767;32768;32769;32770;32771;32772;32773;32774;32775;32776;32777;32778 32772 23 DAEVVLVEGLVPTRK Unmodified 1623.9196 0.91957142 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 42.007 40.206 2;3 7.3851E-07 19934 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 111.74 111.33 231110000 5594800 7030800 7948100 2178700 2537300 1702100 16247000 14203000 14070000 24968000 25426000 24461000 5889200 11550000 12419000 0 2163900 2228400 14446000 11053000 16679000 3148800 2602300 2563200 2766 539 2679 53406;53407;53408;53409;53410;53411;53412;53413;53414;53415;53416;53417;53418;53419;53420;53421;53422;53423;53424;53425;53426;53427;53428;53429;53430;53431;53432;53433;53434;53435;53436;53437;53438;53439;53440;53441;53442;53443;53444;53445;53446;53447;53448 32779;32780;32781;32782;32783;32784;32785;32786;32787;32788;32789;32790;32791;32792;32793 32786 12 DAFIDEMQR Unmodified 1123.4968 0.49680868 229 P0A6C1 nfo Endonuclease 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 32.055 30.822 2 0.00028485 14533 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.17 114.82 165490000 26210000 26272000 20247000 0 0 0 0 0 18507000 0 0 0 15529000 15603000 15898000 0 0 0 27223000 0 0 0 0 0 2767 229 2680 53449;53450;53451;53452;53453;53454;53455;53456;53457 32794;32795;32796;32797;32798;32799;32800;32801;32802 32795 9 DAFLEHAEVFGNYYGTSR Unmodified 2074.9385 0.93846896 1622 P60546 gmk Guanylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 2 1 2 1 43.737 42.2 2;3 4.4958E-37 19884 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 193.3 193.09 394230000 20140000 24362000 25962000 0 0 0 40747000 43335000 37111000 0 0 0 30200000 20035000 34729000 0 0 0 36625000 46407000 34578000 0 0 0 2768 1622 2681 53458;53459;53460;53461;53462;53463;53464;53465;53466;53467;53468;53469;53470;53471;53472;53473;53474;53475;53476;53477 32803;32804;32805;32806;32807;32808;32809;32810;32811;32812;32813;32814;32815;32816;32817;32818 32815 16 DAFVGPTLIAYSMEHPGAAAR Unmodified 2173.0626 0.062623617 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 1 1 2 2 2 48.573 47.356 2;3 4.7318E-43 18970 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 238.43 229.54 855910000 44006000 46169000 5664300 33277000 36511000 38074000 0 0 0 107900000 126810000 99931000 0 0 0 62277000 47575000 46548000 0 0 0 51328000 57046000 52789000 2769 349 2682 53478;53479;53480;53481;53482;53483;53484;53485;53486;53487;53488;53489;53490;53491;53492;53493;53494;53495;53496;53497;53498;53499;53500;53501;53502 32819;32820;32821;32822;32823;32824;32825;32826;32827;32828;32829;32830;32831;32832;32833;32834;32835;32836;32837;32838;32839;32840 32828 20 DAFVNVNTPEELAR Unmodified 1573.7736 0.77363546 1392 P32173 mobA Molybdenum cofactor guanylyltransferase yes yes 0 0 0 By matching By MS/MS 1 1 38.98 37.547 2 6.1845E-09 18086 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.97 147.87 17985000 0 6946500 11038000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2770 1392 2683 53503;53504 32841 32841 1 DAFVQGEDIVLSEENEFPTQVGDASGTPHLSVGCVR Unmodified 3858.8007 0.80066144 187 P08390 usg USG-1 protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.264 51.002 3 2.9915E-37 24131 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 186.23 186.08 206970000 22381000 16538000 16793000 2446500 0 0 17845000 19525000 21491000 0 0 0 21738000 15672000 15944000 0 0 0 9987000 10543000 12185000 0 3885700 0 2771 187 2684 53505;53506;53507;53508;53509;53510;53511;53512;53513;53514;53515;53516;53517;53518 32842;32843 32843 2 DAFVSNNYDSLDALPAGSIVGTSSLR Unmodified 2668.298 0.2980391 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.504 52.06 2 4.662E-31 25458 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 199.76 193.6 95299000 13920000 10518000 15587000 0 0 0 4348600 4254200 5527300 0 0 0 7331200 9610400 8974800 0 0 0 6048200 0 9178200 0 0 0 2772 137 2685 53519;53520;53521;53522;53523;53524;53525;53526;53527;53528;53529 32844;32845 32845 2 DAFVTELLK Unmodified 1034.5648 0.56481189 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.051 45.662 2 0.0010569 22699 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.302 78.863 363290000 21877000 22638000 24950000 0 0 0 29912000 30236000 34212000 0 0 0 31267000 27051000 30355000 0 0 0 37038000 38643000 35114000 0 0 0 2773 1421 2686 53530;53531;53532;53533;53534;53535;53536;53537;53538;53539;53540;53541 32846;32847;32848;32849;32850;32851;32852;32853;32854;32855;32856;32857 32846 12 DAFWEMK Unmodified 925.40039 0.4003891 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.848 37.236 2 0.0092255 18441 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.029 69.704 978140000 36113000 27998000 31056000 7574100 6671400 8261000 41408000 39754000 41795000 21863000 21474000 21768000 68615000 61426000 75515000 11271000 6942900 7044900 130080000 135430000 119270000 21888000 16309000 18616000 2774 660 2687 53542;53543;53544;53545;53546;53547;53548;53549;53550;53551;53552;53553;53554;53555;53556;53557;53558;53559;53560;53561;53562;53563;53564;53565 32858;32859;32860;32861;32862;32863;32864;32865;32866;32867;32868;32869;32870;32871;32872;32873;32874;32875;32876;32877;32878;32879;32880;32881 32864 24 DAGADIEVGEDWISLDMHGK Unmodified 2156.9684 0.96844846 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 51.214 49.948 3 2.0088E-05 24382 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 85.42 85.42 90218000 7535900 3988600 6704800 0 0 0 6208800 7174400 7860600 0 0 0 10501000 7795600 0 0 0 0 13035000 10718000 8694600 0 0 0 2775 311 2688 53566;53567;53568;53569;53570;53571;53572;53573;53574;53575;53576 32882;32883;32884;32885;32886;32887 32883 4 DAGCDAK Unmodified 735.28575 0.28575327 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 4.0296 4.9048 2 0.13874 635 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 46.813 46.813 18911000 0 0 0 0 0 0 0 0 0 0 0 0 5004700 0 946330 0 0 0 3800600 3463900 5695400 0 0 0 2776 1184 2689 53577;53578;53579;53580;53581 32888;32889 32888 2 DAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDR Unmodified 3622.641 0.6409729 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.224 53.751 3 4.7058E-44 25534 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 217.74 216.04 1112200000 75070000 80596000 68490000 0 0 0 60082000 60160000 72159000 0 0 0 114180000 104270000 101550000 0 0 0 129950000 119480000 126190000 0 0 0 2777 448 2690 53582;53583;53584;53585;53586;53587;53588;53589;53590;53591;53592;53593 32890;32891;32892;32893;32894;32895;32896;32897;32898;32899;32900;32901 32900 12 DAGEKLWDAVTGQHDKDDQAK Unmodified 2326.0826 0.082567016 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 30.523 28.953 3;4 4.3445E-10 9871 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 114.75 114.48 233240000 0 0 0 62430000 48624000 76108000 0 0 0 13521000 11259000 11831000 0 0 0 2448700 2168500 4849600 0 0 0 0 0 0 2778 783 2691 53594;53595;53596;53597;53598;53599;53600;53601;53602;53603;53604;53605;53606;53607;53608 32902;32903;32904;32905;32906;32907 32902 6 DAGFQAFADK Unmodified 1068.4876 0.4876242 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 29.927 28.592 2 0.0001505 13537 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.83 121.84 16309000000 989410000 1003400000 948570000 13228000 12154000 12260000 1399800000 1502900000 1421700000 23151000 22299000 23868000 1123400000 1264300000 1290900000 17212000 10739000 10589000 1789600000 1754100000 1632700000 13191000 15313000 14735000 2779 267 2692 53609;53610;53611;53612;53613;53614;53615;53616;53617;53618;53619;53620;53621;53622;53623;53624;53625;53626;53627;53628;53629;53630;53631;53632;53633;53634;53635 32908;32909;32910;32911;32912;32913;32914;32915;32916;32917;32918;32919;32920;32921;32922;32923;32924;32925;32926;32927;32928;32929;32930;32931;32932;32933;32934;32935;32936;32937;32938;32939;32940;32941 32912 31 DAGIEASQIGYVNAHGTSTPAGDK Unmodified 2358.1088 0.10878177 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.016 25.869 2;3 7.4874E-74 11768 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 345.74 345.43 2192600000 124170000 123620000 100510000 0 0 0 194460000 182210000 202650000 0 0 0 223310000 192620000 217040000 0 0 0 217380000 208700000 205860000 0 0 0 2780 596 2693 53636;53637;53638;53639;53640;53641;53642;53643;53644;53645;53646;53647;53648;53649;53650;53651;53652;53653;53654;53655;53656;53657;53658;53659 32942;32943;32944;32945;32946;32947;32948;32949;32950;32951;32952;32953;32954;32955;32956;32957;32958;32959;32960;32961;32962;32963 32951 22 DAGIEASQIGYVNAHGTSTPAGDKAEAQAVK Unmodified 3055.4847 0.48467067 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 25.504 24.374 3;4 9.1258E-55 11067 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 235.55 229.71 1915100000 96992000 78966000 76910000 0 0 0 203090000 207550000 237500000 0 3708000 2275600 176630000 149590000 134320000 0 0 0 182170000 182270000 183090000 0 0 0 2781 596 2694 53660;53661;53662;53663;53664;53665;53666;53667;53668;53669;53670;53671;53672;53673;53674;53675;53676;53677;53678;53679;53680;53681;53682;53683;53684;53685 32964;32965;32966;32967;32968;32969;32970;32971;32972;32973;32974;32975;32976;32977;32978;32979;32980;32981;32982;32983;32984;32985;32986;32987 32969 24 DAGISLTDHQK Unmodified 1183.5833 0.5833155 281 P0A6U5 rsmG Ribosomal RNA small subunit methyltransferase G yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.01 15.695 2 9.2163E-08 5325 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 173.75 169.76 164480000 10645000 0 8351300 0 0 0 16797000 16689000 16434000 1508700 0 1586300 13695000 14756000 13853000 0 0 0 17452000 17573000 15143000 0 0 0 2782 281 2695 53686;53687;53688;53689;53690;53691;53692;53693;53694;53695;53696;53697;53698 32988;32989;32990;32991 32988 4 DAGLNIAPFITLTR Unmodified 1500.83 0.83002813 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.003 53.529 2 6.3262E-11 26337 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 167.11 159.73 417550000 26213000 23191000 24981000 0 0 0 40304000 36498000 33156000 0 0 0 37231000 36114000 39481000 0 0 0 45552000 39087000 35745000 0 0 0 2783 253 2696 53699;53700;53701;53702;53703;53704;53705;53706;53707;53708;53709;53710 32992;32993;32994;32995;32996;32997;32998 32995 7 DAGLNVVMDR Unmodified 1088.5284 0.52844316 1786 P75874 yccU Uncharacterized protein YccU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.49 30.134 2 0.00014525 14134 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 126.31 88.755 964310000 123640000 112300000 106460000 0 0 0 122860000 101780000 114600000 0 0 0 54501000 44820000 37882000 0 0 0 45938000 48946000 50575000 0 0 0 2784 1786 2697 53711;53712;53713;53714;53715;53716;53717;53718;53719;53720;53721;53722 32999;33000;33001;33002;33003;33004;33005;33006;33007;33008 33004 3 DAGLVVEIAPFGGECSQNEIDR Unmodified 2375.1063 0.10633893 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 2 2 2 2 2 2 2 2 52.444 51.196 2;3 2.8438E-43 25299 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 238.02 226.41 346340000 5913700 10614000 11444000 0 0 0 63387000 63553000 59165000 0 0 0 25370000 29352000 28972000 0 0 0 15708000 17263000 15596000 0 0 0 2785 554 2698 53723;53724;53725;53726;53727;53728;53729;53730;53731;53732;53733;53734;53735;53736;53737;53738;53739;53740;53741;53742;53743;53744;53745 33009;33010;33011;33012;33013;33014;33015;33016;33017;33018;33019 33009 11 DAGMVNSDEPAK Unmodified 1232.5343 0.53431639 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.437 14.313 2 7.974E-12 4491 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 190.88 190.88 1020900000 67673000 66843000 72613000 946240 0 0 85885000 95734000 83406000 0 0 0 85902000 88348000 83524000 0 0 0 99224000 99468000 91339000 0 0 0 2786 170 2699 53746;53747;53748;53749;53750;53751;53752;53753;53754;53755;53756;53757;53758 33020;33021;33022;33023;33024;33025;33026;33027;33028;33029;33030;33031 33020 12 DAGNIIIDDDDISLLPLHAR Unmodified 2175.1172 0.11716161 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.398 51.363 3 6.5051E-11 24950 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.45 123.83 488200000 0 0 0 14959000 19430000 19463000 0 42020000 38104000 45731000 49765000 45898000 0 0 0 14235000 11064000 14495000 66136000 55087000 51810000 0 0 0 2787 559 2700 53759;53760;53761;53762;53763;53764;53765;53766;53767;53768;53769;53770;53771;53772 33032;33033;33034;33035;33036;33037;33038;33039;33040;33041;33042;33043;33044 33039 13 DAGTLLWLGK Unmodified 1072.5917 0.59169534 100 P04983 rbsA Ribose import ATP-binding protein RbsA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 48.738 47.356 2 0.024262 22877 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 69.423 65.013 37367000 1818700 0 1851800 0 0 936250 3869300 3291500 2677300 1176300 0 0 3506600 3353400 2721900 0 0 0 3553900 3867800 4742300 0 0 0 2788 100 2701 53773;53774;53775;53776;53777;53778;53779;53780;53781;53782;53783;53784;53785 33045;33046 33045 2 DAGVDIDAGNALVGR Unmodified 1441.7161 0.71612058 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.989 35.124 2 1.3826E-21 17140 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 225.31 219.75 622620000 170060000 155560000 147410000 3607100 4030600 3546900 9741400 9989800 11917000 2138900 1606200 2183500 17193000 17773000 0 0 0 0 21680000 21194000 18627000 1729300 1176700 1459300 2789 174 2702 53786;53787;53788;53789;53790;53791;53792;53793;53794;53795;53796;53797;53798;53799;53800;53801;53802;53803;53804;53805;53806 33047;33048;33049;33050;33051;33052;33053;33054;33055;33056;33057;33058;33059 33054 12 DAGVMAASWAQYQAQDALIK Unmodified 2136.031 0.030989138 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 2 2 2 1 2 2 51.337 50.106 2;3 1.2004E-45 24632 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 249.32 236.96 336800000 30273000 26779000 21171000 0 0 0 15809000 46181000 17227000 0 0 0 35852000 30903000 31637000 0 0 0 13811000 34800000 32358000 0 0 0 2790 43 2703 53807;53808;53809;53810;53811;53812;53813;53814;53815;53816;53817;53818;53819;53820;53821;53822;53823;53824 33060;33061;33062;33063;33064;33065;33066;33067;33068;33069;33070;33071;33072 33065 11 DAGWHITVHAGEAAGPESIWQAIR Unmodified 2571.2619 0.26186879 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 2 2 1 2 2 1 1 1 1 2 1 1 1 1 47.251 45.659 3;4 2.0563E-15 22742 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.2 147.28 323140000 13406000 7631900 8012500 1757600 0 2607100 51226000 56387000 46732000 10713000 12896000 14268000 11230000 15124000 12991000 0 0 0 14061000 18394000 18568000 1972100 2524700 2640900 2791 1196 2704 53825;53826;53827;53828;53829;53830;53831;53832;53833;53834;53835;53836;53837;53838;53839;53840;53841;53842;53843;53844;53845;53846;53847;53848;53849;53850 33073;33074;33075;33076;33077;33078;33079;33080;33081;33082;33083;33084;33085;33086 33076 11 DAGYTAVISHR Unmodified 1188.5887 0.58873523 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 2 2 2 2 2 2 3 2 2 2 2 2 3 2 1 1 2 2 2 2 2 2 19.043 19.411 2;3 2.6277E-27 6925 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 269.23 265.49 43360000000 2975700000 2728500000 2259200000 17158000 14415000 13740000 5477800000 4732700000 4954500000 13715000 10452000 10741000 3393500000 3183200000 2714100000 3491100 2112700 2161400 3756200000 3679100000 3403400000 5015600 5016100 4201100 2792 270 2705 53851;53852;53853;53854;53855;53856;53857;53858;53859;53860;53861;53862;53863;53864;53865;53866;53867;53868;53869;53870;53871;53872;53873;53874;53875;53876;53877;53878;53879;53880;53881;53882;53883;53884;53885;53886;53887;53888;53889;53890;53891;53892;53893;53894;53895;53896;53897;53898;53899;53900 33087;33088;33089;33090;33091;33092;33093;33094;33095;33096;33097;33098;33099;33100;33101;33102;33103;33104;33105;33106;33107;33108;33109;33110;33111;33112;33113;33114;33115;33116;33117;33118;33119;33120;33121;33122;33123 33121 36 DAHFIGLR Unmodified 927.49265 0.49265 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.271 22.541 2 0.00074681 9596 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.89 106.2 638010000 140280000 138460000 116730000 0 0 0 32643000 33620000 29290000 0 0 0 21221000 19996000 19214000 0 0 0 25909000 32706000 27935000 0 0 0 2793 555 2706 53901;53902;53903;53904;53905;53906;53907;53908;53909;53910;53911;53912 33124;33125;33126;33127;33128;33129 33128 3 DAHSGMSGPNAAMR Unmodified 1400.5925 0.59251675 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.942 13.56 3 0.035951 3291 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 25.978 25.845 97789000 0 7572400 0 0 3830300 0 7742600 0 8678000 3702000 7431100 4680200 0 4612400 5745900 0 0 0 11518000 10463000 9250500 4327900 3969000 4265600 2794 1417 2707 53913;53914;53915;53916;53917;53918;53919;53920;53921;53922;53923;53924;53925;53926;53927 33130 33130 1 DAIAAAIDVLNEER Unmodified 1498.7627 0.76273643 1578 P45748 tsaC Threonylcarbamoyl-AMP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 2 2 2 2 2 2 2 2 53.554 52.111 2;3 2.5984E-14 25472 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 221.55 211.02 377630000 31471000 35141000 30015000 0 0 0 23420000 23663000 21759000 0 0 0 30802000 30304000 36294000 0 0 0 43013000 38480000 33267000 0 0 0 2795 1578 2708 53928;53929;53930;53931;53932;53933;53934;53935;53936;53937;53938;53939;53940;53941;53942;53943;53944;53945;53946;53947;53948;53949;53950 33131;33132;33133;33134;33135;33136;33137;33138;33139;33140 33134 8 DAIAADQLFTTLMGDAVEPR Unmodified 2133.0412 0.041219473 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 2 1 2 1 2 1 2 2 2 2 55.807 54.365 2;3 1.1529E-29 26037 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 204.43 191.02 787630000 36781000 42635000 44224000 2593500 6684100 8608800 4084800 3338200 18726000 0 0 0 102160000 55488000 81277000 0 0 0 116540000 127080000 137410000 0 0 0 2796 883 2709 53951;53952;53953;53954;53955;53956;53957;53958;53959;53960;53961;53962;53963;53964;53965;53966;53967;53968;53969;53970;53971;53972;53973;53974;53975 33141;33142;33143;33144;33145;33146 33146 4 DAIATVNK Unmodified 830.44978 0.44978213 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 12.833 13.681 2 0.0078415 4133 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 82.671 23.69 495450000 85063000 0 0 0 0 0 52996000 52896000 44092000 0 0 0 53482000 42068000 0 0 0 0 53273000 56674000 54902000 0 0 0 2797 990 2710 53976;53977;53978;53979;53980;53981;53982;53983;53984 33147;33148;33149 33149 3 DAIATVNKQEDANFSNNAMAEAFK Unmodified 2598.202 0.20203022 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.748 36.403 3 3.6642E-10 17508 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 122.47 119.58 152870000 19271000 18568000 14835000 0 0 1211900 5953000 11780000 10015000 0 0 0 10537000 7855900 7213200 2771100 2305200 1533600 13626000 12645000 12746000 0 0 0 2798 990 2711 53985;53986;53987;53988;53989;53990;53991;53992;53993;53994;53995;53996;53997;53998;53999;54000 33150;33151;33152;33153;33154 33152 5 DAIDALFDANR Unmodified 1219.5833 0.5833155 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 47.996 46.534 2 4.5638E-14 22722 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 203.35 184.91 135230000 45282000 44048000 39232000 0 0 0 1863100 0 1156600 0 0 0 0 0 0 0 0 0 0 0 3652000 0 0 0 2799 1173 2712 54001;54002;54003;54004;54005;54006 33155;33156;33157 33156 3 DAIIDDLK Unmodified 901.47566 0.47566253 1871 P76550 yffS Uncharacterized protein YffS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.381 31.364 2 0.0030532 14685 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.352 56.534 84075000 13703000 11246000 11429000 0 0 0 0 0 5377000 0 0 0 4794500 5278700 5527200 2229100 1730800 2179000 5113700 6723900 8020100 0 722980 0 2800 1871 2713 54007;54008;54009;54010;54011;54012;54013;54014;54015;54016;54017;54018;54019;54020 33158;33159;33160;33161 33159 4 DAILDEK Unmodified 802.40725 0.40724861 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.794 17.464 2 0.028152 6218 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 68.915 26.44 842980000 54516000 56681000 0 0 0 0 145220000 144010000 146100000 743970 0 0 45374000 47596000 49156000 0 0 0 53660000 52286000 47642000 0 0 0 2801 214 2714 54021;54022;54023;54024;54025;54026;54027;54028;54029;54030;54031;54032 33162;33163;33164;33165;33166 33165 5 DAINNVEAYFEQHPALLK Unmodified 2071.0375 0.037454724 947 P0AFJ7 pitA Low-affinity inorganic phosphate transporter 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.025 49.763 3 2.8495E-10 24221 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 130.21 125.51 305700000 8147200 0 0 3676900 2637400 3205000 38591000 32262000 33518000 0 0 0 20698000 22856000 20511000 0 0 0 37394000 33766000 37087000 0 0 11349000 2802 947 2715 54033;54034;54035;54036;54037;54038;54039;54040;54041;54042;54043;54044;54045;54046 33167;33168;33169;33170;33171;33172;33173;33174;33175;33176 33168 10 DAINQVADR Unmodified 1000.4938 0.49377221 1700 P64624 yheO Uncharacterized protein YheO yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 16.123 16.852 2 0.00030105 5884 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.76 85.151 155010000 22636000 0 0 0 0 0 33528000 30558000 30861000 0 0 0 0 0 0 0 0 0 17517000 19911000 0 0 0 0 2803 1700 2716 54047;54048;54049;54050;54051;54052 33177;33178;33179 33179 3 DAIPTQSVLTITSNVVYGK Unmodified 2005.0732 0.073171528 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 3 3 3 2 2 2 3 2 3 1 1 1 3 3 3 2 2 1 53.028 51.716 2;3 1.3405E-23 25224 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 201.95 199.24 19134000000 706570000 775730000 617870000 5448100 5372600 5387500 2418400000 2290500000 2290100000 16299000 22425000 22596000 2088700000 1819900000 1922500000 7395500 3037600 3988200 1484000000 1313200000 1287100000 10951000 11394000 4831300 2804 212 2717 54053;54054;54055;54056;54057;54058;54059;54060;54061;54062;54063;54064;54065;54066;54067;54068;54069;54070;54071;54072;54073;54074;54075;54076;54077;54078;54079;54080;54081;54082;54083;54084;54085;54086;54087;54088;54089;54090;54091;54092;54093;54094;54095;54096;54097;54098;54099;54100;54101 33180;33181;33182;33183;33184;33185;33186;33187;33188;33189;33190;33191;33192;33193;33194;33195;33196;33197;33198;33199;33200;33201;33202;33203;33204;33205;33206;33207;33208;33209;33210;33211;33212;33213;33214;33215;33216;33217;33218;33219;33220;33221;33222;33223;33224 33208 45 DAIPTQSVLTITSNVVYGKK Unmodified 2133.1681 0.16813455 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 46.316 45.127 3 0.0016366 16046 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 60.034 56.936 37033000 0 0 0 2898700 3237500 3836100 3729200 0 0 0 4344900 3757400 0 0 0 4499000 5176000 2403300 0 0 0 3150900 0 0 2805 212 2718 54102;54103;54104;54105;54106;54107;54108;54109;54110;54111 33225;33226;33227;33228;33229 33229 5 DAKPQGGIGLLTVK Unmodified 1395.8086 0.80856441 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.486 28.23 3 0.1186 12484 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 27.208 22.112 759680000 51738000 49787000 57754000 0 0 0 57829000 66026000 56649000 0 0 0 61629000 58783000 51702000 0 0 0 72681000 86663000 88442000 0 0 0 2806 720 2719 54112;54113;54114;54115;54116;54117;54118;54119;54120;54121;54122;54123 33230;33231 33231 2 DALAITGK Unmodified 787.44397 0.44396847 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.309 20.671 2 0.0011803 8376 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.01 68.884 1028600000 104910000 99648000 0 0 0 0 153840000 147670000 139520000 0 0 0 82456000 74965000 0 0 0 0 83531000 78236000 63779000 0 0 0 2807 1284 2720 54124;54125;54126;54127;54128;54129;54130;54131;54132;54133;54134;54135 33232;33233;33234;33235;33236;33237;33238;33239;33240;33241;33242;33243 33232 12 DALALTLDSVR Unmodified 1172.6401 0.6401021 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 43.892 42.362 2 0.12507 20654 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 40.727 34.947 144650000 11377000 14157000 9112700 0 0 0 25467000 25052000 25291000 0 0 0 3253500 0 5451700 0 0 0 9936500 7588500 7965800 0 0 0 2808 1926 2721 54136;54137;54138;54139;54140;54141;54142;54143;54144;54145;54146 33244 33244 0 DALAPHISAETIEYHYGK Unmodified 2013.9796 0.97960549 1008 P0AGD3 sodB Superoxide dismutase [Fe] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 3 3 3 2 2 2 3 3 3 1 1 2 3 3 3 2 2 1 31.068 29.637 2;3;4 3.8079E-55 13947 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 276.32 273.63 13854000000 1554000000 1419900000 1294900000 6699500 6081900 4407700 1334300000 1295000000 1361800000 6102500 5515500 6330900 716170000 741860000 725500000 1686800 2436600 2515000 1152800000 1136900000 1072200000 2714000 2827400 1141400 2809 1008 2722 54147;54148;54149;54150;54151;54152;54153;54154;54155;54156;54157;54158;54159;54160;54161;54162;54163;54164;54165;54166;54167;54168;54169;54170;54171;54172;54173;54174;54175;54176;54177;54178;54179;54180;54181;54182;54183;54184;54185;54186;54187;54188;54189;54190;54191;54192;54193;54194;54195;54196;54197;54198;54199;54200;54201;54202;54203 33245;33246;33247;33248;33249;33250;33251;33252;33253;33254;33255;33256;33257;33258;33259;33260;33261;33262;33263;33264;33265;33266;33267;33268;33269;33270;33271;33272;33273;33274;33275;33276;33277;33278;33279 33265 35 DALDAGDCVVAEWR Unmodified 1575.6988 0.69875596 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 44.31 42.888 2 5.0463E-11 20893 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 206.97 199.4 111900000 8915700 9273400 8583100 0 0 0 0 0 3750800 0 0 0 9553200 7086100 9493500 0 0 0 18531000 18826000 17887000 0 0 0 2810 937 2723 54204;54205;54206;54207;54208;54209;54210;54211;54212;54213 33280;33281;33282;33283;33284;33285;33286;33287;33288 33281 9 DALEAAGLK Unmodified 886.476 0.47599688 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.513 24.433 1;2 0.0026103 11038 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 122.52 84.705 4317400000 265710000 270820000 236760000 0 0 0 490610000 433730000 430960000 0 0 0 326170000 317710000 301640000 0 0 0 413960000 418760000 410590000 0 0 0 2811 412 2724 54214;54215;54216;54217;54218;54219;54220;54221;54222;54223;54224;54225;54226;54227;54228;54229;54230;54231;54232;54233;54234;54235;54236;54237 33289;33290;33291;33292;33293;33294;33295;33296;33297;33298;33299;33300;33301;33302;33303;33304;33305;33306;33307;33308;33309;33310;33311;33312 33296 11 DALFCWK Unmodified 938.43202 0.43202358 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.69 39.956 2 0.019405 18804 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 77.748 74.053 766040000 202130000 216120000 206650000 598700 601390 803800 8313400 8982600 8334800 0 0 368800 14830000 16763000 15378000 0 0 0 23736000 20879000 21549000 0 0 0 2812 1111 2725 54238;54239;54240;54241;54242;54243;54244;54245;54246;54247;54248;54249;54250;54251;54252;54253 33313;33314;33315;33316;33317;33318;33319;33320;33321;33322 33320 10 DALFQSDAFVNKLEEGHTNEVNSEVHDALLQVVDMR Unmodified 4068.9487 0.94872266 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 1 1 1 1 1 1 1 53.463 52.218 4;5 1.878E-17 19036 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 122.63 117.92 87146000 0 0 0 22608000 20071000 17906000 0 0 0 4552200 0 3139800 0 0 0 0 3185900 0 0 0 0 3754000 4575700 7353600 2813 1899 2726 54254;54255;54256;54257;54258;54259;54260;54261;54262;54263;54264 33323;33324;33325;33326 33324 4 DALGEHILER Unmodified 1151.5935 0.59348625 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 24.877 23.891 2;3 4.1446E-05 10097 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 157.96 147.97 1900500000 272760000 301630000 264510000 0 0 0 166680000 174300000 156680000 0 0 0 94221000 85393000 80652000 0 0 0 51789000 128020000 123840000 0 0 0 2814 43 2727 54265;54266;54267;54268;54269;54270;54271;54272;54273;54274;54275;54276;54277;54278;54279;54280;54281;54282;54283;54284;54285;54286;54287 33327;33328;33329;33330;33331;33332;33333;33334;33335;33336;33337;33338;33339;33340;33341;33342;33343;33344;33345 33345 18 DALLAPPAWQEGGSMAHLLGTDDVGR Unmodified 2676.2966 0.29659931 856 P0AEG1 dppC Dipeptide transport system permease protein DppC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 52.449 51.254 3 3.0222E-22 25288 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 162.77 160.05 89462000 29548000 32870000 23905000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3137800 0 0 0 2815 856 2728 54288;54289;54290;54291;54292 33346;33347;33348 33346 3 DALLENVTVR Unmodified 1128.6139 0.61388734 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.058 32.61 2 1.4716E-06 15518 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 164.57 68.313 4310100000 488360000 517780000 506420000 0 0 0 362250000 344310000 367740000 0 0 0 267940000 227340000 284660000 0 0 0 307870000 319680000 315710000 0 0 0 2816 1195 2729 54293;54294;54295;54296;54297;54298;54299;54300;54301;54302;54303;54304 33349;33350;33351;33352;33353;33354;33355;33356;33357;33358;33359;33360;33361;33362 33352 14 DALLEVTR Unmodified 915.50255 0.50254598 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.54 27.292 2 0.00024649 12908 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.17 96.611 420770000 37750000 31459000 38208000 0 0 0 32222000 42932000 36136000 0 0 0 27714000 28008000 24815000 0 0 0 49220000 38241000 34062000 0 0 0 2817 1565 2730 54305;54306;54307;54308;54309;54310;54311;54312;54313;54314;54315;54316 33363;33364;33365;33366;33367;33368;33369 33363 7 DALLGLPVK Unmodified 924.56442 0.56441796 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 41.27 39.585 2 0.0047118 19428 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.058 59.21 136210000 16059000 17940000 12798000 0 0 0 10782000 14275000 13991000 0 0 0 9222100 0 6198700 0 0 0 12370000 10826000 11750000 0 0 0 2818 134 2731 54317;54318;54319;54320;54321;54322;54323;54324;54325;54326;54327 33370;33371;33372;33373;33374;33375;33376;33377;33378 33375 9 DALMKYETIDAPQIDDLMAR 2 Oxidation (M) 2340.0977 0.097748074 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 2 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 54.844 53.433 2 0.13008 19616 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 40.767 29.497 354410000 0 0 0 29116000 29667000 27942000 0 0 0 125840000 52595000 49481000 0 0 0 0 0 0 0 0 0 0 16808000 22967000 2819 595 2732 54328;54329;54330;54331;54332;54333;54334;54335 33379 33379 1 DALMQEYDDK Unmodified 1226.5125 0.51251832 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.769 23.78 2 6.6438E-05 10160 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 133.57 130 318400000 34720000 31550000 30230000 0 0 0 29831000 26112000 24509000 0 0 0 23417000 23556000 20623000 0 0 0 26175000 26008000 21665000 0 0 0 2820 94 2733 54336;54337;54338;54339;54340;54341;54342;54343;54344;54345;54346;54347 33380;33381;33382;33383;33384;33385;33386;33387;33388 33387 9 DALMQEYDDKWHQNGLVMDK Unmodified 2435.0886 0.088580371 94 P04825 pepN Aminopeptidase N yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 1 35.848 34.277 3;4 3.2879E-18 16332 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 164.02 162.55 648930000 88660000 85660000 81795000 0 0 0 51549000 48202000 51826000 0 0 0 39819000 27690000 39046000 0 0 0 47566000 53115000 33999000 0 0 0 2821 94 2734 54348;54349;54350;54351;54352;54353;54354;54355;54356;54357;54358;54359;54360;54361;54362;54363;54364;54365;54366;54367;54368;54369 33389;33390;33391;33392;33393;33394;33395;33396;33397;33398;33399;33400 33397 12 DALNNVHITDEQVLMTPEQLK Unmodified 2407.2053 0.20532469 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.594 42.079 3 5.3192E-05 19826 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 81.144 45.591 269530000 19587000 21622000 18670000 0 0 0 22854000 23063000 23995000 0 0 0 22814000 15681000 16847000 0 0 0 31854000 25013000 27528000 0 0 0 2822 45 2735 54370;54371;54372;54373;54374;54375;54376;54377;54378;54379;54380;54381 33401;33402;33403;33404;33405;33406;33407;33408;33409;33410;33411;33412 33410 12 DALNQAADDLNQR Unmodified 1442.675 0.67498405 802 P0ADS2 zapA Cell division protein ZapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 2 27.795 26.53 2;3 4.5596E-40 12173 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 277.7 268.35 1042900000 91004000 76965000 73048000 0 1262800 645900 102670000 98088000 99426000 3030200 4597500 0 75411000 71715000 69300000 0 0 0 97713000 94263000 83737000 0 0 0 2823 802 2736 54382;54383;54384;54385;54386;54387;54388;54389;54390;54391;54392;54393;54394;54395;54396;54397;54398;54399;54400;54401;54402;54403;54404;54405;54406;54407;54408;54409;54410 33413;33414;33415;33416;33417;33418;33419;33420;33421;33422;33423;33424;33425;33426;33427;33428;33429 33424 15 DALNSGDTAALAEWSAPIQAR Unmodified 2156.0498 0.049810324 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 1 1 1 50.123 48.845 2;3 3.1242E-21 23755 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 218.63 213.35 1117200000 46991000 44820000 33194000 0 0 0 294500000 305000000 309860000 0 0 0 15223000 12657000 0 2308900 0 2214500 23639000 26775000 0 0 0 0 2824 1265 2737 54411;54412;54413;54414;54415;54416;54417;54418;54419;54420;54421;54422;54423;54424;54425 33430;33431;33432 33432 3 DALNSGSAGTEDEVTTPAADNAIAEAAER Unmodified 2845.285 0.28496781 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.67 37.811 3 4.4929E-16 18659 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 136.89 136.07 345040000 11596000 8042800 6364900 13352000 11159000 13334000 21535000 22960000 21607000 16154000 14487000 18079000 15552000 16904000 13950000 0 0 0 28317000 25067000 25854000 13375000 12976000 14371000 2825 648 2738 54426;54427;54428;54429;54430;54431;54432;54433;54434;54435;54436;54437;54438;54439;54440;54441;54442;54443;54444;54445;54446 33433;33434;33435;33436;33437;33438;33439;33440;33441;33442;33443;33444;33445;33446 33437 14 DALPLMENAYR Unmodified 1291.6231 0.62307182 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.221 38.4 2 0.035295 15510 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 66.568 55.205 104940000 7482700 6103300 3756700 0 1362800 1030000 0 7199500 0 4620800 3311200 4196300 6369700 5882400 4375200 0 0 0 15191000 16110000 12619000 2059700 0 3269400 2826 690 2739 54447;54448;54449;54450;54451;54452;54453;54454;54455;54456;54457;54458;54459;54460;54461;54462;54463 33447 33447 1 DALPTEEEQFAAYK Unmodified 1610.7464 0.74641766 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.022 34.244 2 1.4334E-09 16388 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 157.24 149.98 9182400000 601700000 588930000 495500000 2611500 2148500 2834900 750860000 826210000 793130000 5984700 4476300 4849900 844510000 838620000 737990000 0 0 0 879130000 921710000 870100000 3468100 4230700 3421000 2827 192 2740 54464;54465;54466;54467;54468;54469;54470;54471;54472;54473;54474;54475;54476;54477;54478;54479;54480;54481;54482;54483;54484 33448;33449;33450;33451;33452;33453;33454;33455;33456;33457;33458;33459;33460;33461 33458 13 DALSYLR Unmodified 836.43922 0.43921744 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.611 30.392 2 0.00099802 10304 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 139.27 100.9 142290000 12206000 0 10214000 0 0 0 8585800 8062000 7575600 1248400 0 0 5007800 7239500 6064700 16373000 14109000 13526000 9598500 9259900 11013000 0 0 2203100 2828 80 2741 54485;54486;54487;54488;54489;54490;54491;54492;54493;54494;54495;54496;54497;54498;54499;54500 33462;33463;33464;33465;33466;33467;33468 33462 7 DALTAAAAR Unmodified 858.45593 0.45593014 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 16.174 17.105 2 0.0098629 5982 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 75.213 42.742 327240000 0 0 0 0 0 0 0 0 102490000 0 0 0 52902000 36008000 42482000 0 0 0 0 46923000 46430000 0 0 0 2829 785 2742 54501;54502;54503;54504;54505;54506 33469;33470;33471 33470 0 DALTGELFR Unmodified 1020.524 0.52400971 1578 P45748 tsaC Threonylcarbamoyl-AMP synthase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.741 39.076 2 3.8764E-11 18899 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 206.5 137.58 388190000 29252000 25293000 25802000 0 0 0 24334000 25261000 24327000 0 0 0 26625000 28212000 24979000 0 0 0 54359000 47265000 52477000 0 0 0 2830 1578 2743 54507;54508;54509;54510;54511;54512;54513;54514;54515;54516;54517;54518 33472;33473;33474;33475;33476;33477;33478;33479;33480 33476 9 DALVADFPGLTR Unmodified 1273.6667 0.6666512 268 P0A6P5 der GTPase Der yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 47.773 46.021 2 0.065596 22926 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 51.927 39.137 31270000 0 0 0 0 0 0 12087000 8926100 10257000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2831 268 2744 54519;54520;54521 33481 33481 0 DALVAFLEQHK Unmodified 1269.6717 0.67173657 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.525 39.852 2;3 1.61E-07 18526 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 168.8 164.59 1839500000 172480000 162410000 159410000 0 0 0 135520000 121490000 110980000 0 0 0 134010000 121140000 113500000 0 0 0 201060000 223410000 184110000 0 0 0 2832 1634 2745 54522;54523;54524;54525;54526;54527;54528;54529;54530;54531;54532;54533;54534;54535;54536;54537;54538;54539;54540;54541;54542;54543;54544;54545 33482;33483;33484;33485;33486;33487;33488;33489;33490;33491;33492;33493;33494;33495;33496;33497;33498;33499;33500;33501;33502;33503 33503 22 DALVVMK Unmodified 774.43096 0.43096094 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.585 23.588 2 0.0078297 10404 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 89.673 73.566 1417800000 128720000 112220000 108610000 0 0 0 115170000 127060000 108610000 0 0 0 105720000 100230000 87920000 0 0 0 134690000 142160000 146700000 0 0 0 2833 547 2746 54546;54547;54548;54549;54550;54551;54552;54553;54554;54555;54556;54557 33504;33505;33506;33507;33508;33509;33510;33511;33512 33509 9 DALYVGK Unmodified 764.40685 0.40685468 1968 Q46938 kduI 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 17.744 18.41 2 0.14116 6412 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 46.37 24.824 37940000 0 0 2850000 0 0 0 6379500 4485700 4822900 0 0 0 4810600 0 5448400 0 0 0 0 5748800 3394200 0 0 0 2834 1968 2747 54558;54559;54560;54561;54562;54563;54564;54565 33513 33513 1 DAMFTTSSENR Unmodified 1257.5296 0.52956537 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.895 20.385 2 3.6847E-14 7960 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 207.68 207.68 1816400000 148470000 117830000 121570000 0 0 0 158210000 176370000 160280000 0 0 0 157670000 150420000 122530000 0 0 0 174320000 167520000 161170000 0 0 0 2835 445 2748 54566;54567;54568;54569;54570;54571;54572;54573;54574;54575;54576;54577 33514;33515;33516;33517;33518;33519;33520;33521;33522;33523;33524;33525 33517 12 DAMVPMGGLLCMK Oxidation (M) 1437.6488 0.64883434 397 P0A853 tnaA Tryptophanase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 5 5 5 5 2 6 3 4 4 2 45.386 43.871 2 0.00042114 22687 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 77.192 76.883 729410000 133250000 149130000 105920000 0 0 0 67499000 64226000 58310000 0 0 0 19525000 33857000 27798000 0 0 0 26595000 26623000 16670000 0 0 0 2836 397 2749 54578;54579;54580;54581;54582;54583;54584;54585;54586;54587;54588;54589;54590;54591;54592;54593;54594;54595;54596;54597;54598;54599;54600;54601;54602;54603;54604;54605;54606;54607;54608;54609;54610;54611;54612;54613;54614;54615;54616;54617;54618;54619;54620;54621;54622;54623;54624;54625;54626;54627;54628 33526;33527;33528;33529;33530;33531;33532;33533;33534;33535;33536;33537;33538;33539;33540;33541;33542;33543;33544;33545;33546;33547;33548;33549;33550;33551;33552 33529 185;186;187 16 DAMVPMGGLLCMK Unmodified 1421.6539 0.65391972 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 2 2 2 2 2 2 2 2 3 51.292 50.045 2;3 4.8028E-05 24675 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 116.3 112.15 11889000000 2159400000 2124000000 2096000000 3353500 4222100 3440300 796110000 761010000 726770000 0 0 0 603490000 621580000 586480000 0 0 0 463300000 486260000 453980000 0 0 0 2837 397 2749 54629;54630;54631;54632;54633;54634;54635;54636;54637;54638;54639;54640;54641;54642;54643;54644;54645;54646;54647;54648;54649;54650;54651;54652;54653;54654;54655;54656;54657;54658;54659 33553;33554;33555;33556;33557;33558;33559;33560;33561;33562;33563;33564;33565;33566;33567;33568;33569;33570;33571 33555 19 DANDTGSTEVQVALLTAQINHLQGHFAEHK Unmodified 3243.5909 0.59086708 823 P0ADZ4 rpsO 30S ribosomal protein S15 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 2 3 2 3 3 3 3 3 4 3 3 3 1 45.95 44.656 3;4;5 4.7058E-108 21123 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 318.74 316.62 8025000000 1141500000 870590000 888150000 5580600 5278800 4392300 383480000 307560000 282530000 33954000 29214000 24127000 281420000 253640000 335320000 374670000 516140000 607920000 541650000 648060000 484170000 5607300 0 0 2838 823 2750 54660;54661;54662;54663;54664;54665;54666;54667;54668;54669;54670;54671;54672;54673;54674;54675;54676;54677;54678;54679;54680;54681;54682;54683;54684;54685;54686;54687;54688;54689;54690;54691;54692;54693;54694;54695;54696;54697;54698;54699;54700;54701;54702;54703;54704;54705;54706;54707;54708;54709;54710;54711;54712;54713;54714;54715;54716 33572;33573;33574;33575;33576;33577;33578;33579;33580;33581;33582;33583;33584;33585;33586;33587;33588;33589;33590;33591;33592;33593;33594;33595;33596;33597;33598;33599;33600;33601;33602;33603;33604;33605;33606;33607;33608;33609;33610;33611;33612;33613;33614;33615;33616;33617;33618;33619;33620;33621;33622;33623;33624;33625;33626 33620 55 DANDTGSTEVQVALLTAQINHLQGHFAEHKK Unmodified 3371.6858 0.68583009 823 P0ADZ4 rpsO 30S ribosomal protein S15 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 5 3 4 2 2 2 2 2 2 41.235 39.806 3;4;5;6 2.2816E-33 14358 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 199.2 197.13 5548100000 64741000 59992000 58047000 14543000 17032000 12847000 30478000 23967000 16982000 63247000 72728000 64495000 29508000 23058000 28596000 1281600000 1107200000 2283600000 55360000 63769000 65569000 40197000 35277000 35229000 2839 823 2751 54717;54718;54719;54720;54721;54722;54723;54724;54725;54726;54727;54728;54729;54730;54731;54732;54733;54734;54735;54736;54737;54738;54739;54740;54741;54742;54743;54744;54745;54746;54747;54748;54749;54750;54751;54752;54753;54754;54755;54756;54757;54758;54759;54760;54761;54762;54763;54764;54765;54766;54767 33627;33628;33629;33630;33631;33632;33633;33634;33635;33636;33637;33638;33639;33640;33641;33642;33643;33644;33645;33646;33647;33648;33649;33650;33651;33652;33653;33654;33655;33656;33657;33658;33659;33660;33661 33629 34 DANFSLEGLTGFTMYGK Unmodified 1849.8557 0.85565053 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.942 53.469 2 1.2295E-06 26295 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 100.22 96.361 237520000 15714000 14249000 16601000 0 0 0 27199000 26916000 27116000 0 0 0 22123000 22196000 21821000 0 0 0 13266000 13744000 16572000 0 0 0 2840 1608 2752 54768;54769;54770;54771;54772;54773;54774;54775;54776;54777;54778;54779 33662;33663;33664 33662 0 DANFVEEVEEE Unmodified 1308.5358 0.53575618 768 P0AD49 raiA Ribosome-associated inhibitor A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.502 46 2 7.5327E-06 21764 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 149.82 149.82 697210000 27060000 26512000 26444000 0 0 0 79877000 76058000 78221000 0 1814600 1992400 79789000 76166000 82935000 0 0 0 45684000 53480000 41181000 0 0 0 2841 768 2753 54780;54781;54782;54783;54784;54785;54786;54787;54788;54789;54790;54791;54792;54793 33665;33666;33667;33668;33669;33670;33671;33672;33673;33674;33675;33676 33674 12 DANGELVAK Unmodified 915.46616 0.46616048 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 1 2 2 2 2 1 2 2 1 14.721 15.11 2 0.0010929 3445 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 93.374 42.408 5103900000 0 0 0 3234000 2421900 919280 2173400 0 0 325920000 286870000 288240000 0 0 36317000 930460000 1029400000 953340000 0 5416100 2995700 436570000 392570000 406990000 2842 458 2754 54794;54795;54796;54797;54798;54799;54800;54801;54802;54803;54804;54805;54806;54807;54808;54809;54810;54811;54812;54813;54814;54815;54816;54817;54818;54819;54820 33677;33678;33679;33680;33681;33682;33683;33684;33685;33686;33687;33688;33689 33679 13 DANGNLLADGDSVTIIK Unmodified 1714.8737 0.87374344 945 P0AFJ1 phnA Protein PhnA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 43.523 41.996 2 9.8382E-11 20463 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 150.22 139.31 615880000 0 82604000 77040000 0 0 0 64413000 65981000 60902000 0 0 0 52090000 54920000 48698000 0 0 0 0 54005000 55225000 0 0 0 2843 945 2755 54821;54822;54823;54824;54825;54826;54827;54828;54829;54830;54831 33690;33691;33692;33693;33694 33691 5 DANRVVALLGGK Unmodified 1211.6986 0.69862003 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 30.872 29.557 2;3 0.00053523 11106 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 85.958 77.426 26963000 0 0 0 0 0 0 0 0 0 2296800 3024700 2959400 0 0 0 1780600 1717300 2366100 0 0 0 4010400 4425600 4381800 2844 723 2756 54832;54833;54834;54835;54836;54837;54838;54839;54840;54841;54842;54843;54844;54845;54846;54847;54848 33695;33696;33697;33698 33695 4 DAPDYQYLAAR Unmodified 1281.599 0.59896556 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.782 29.115 2 3.2387E-05 13782 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.76 111.79 1079500000 108690000 0 0 1164900 0 1146500 118990000 121290000 108830000 1503200 1743900 1392000 91973000 89342000 0 0 0 0 138940000 134990000 155180000 0 2831900 1513100 2845 29 2757 54849;54850;54851;54852;54853;54854;54855;54856;54857;54858;54859;54860;54861;54862;54863;54864 33699;33700;33701;33702;33703;33704;33705;33706 33701 8 DAPLVASLSVNQK Unmodified 1340.73 0.72997974 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 1 1 1 35.347 33.692 2;3 7.3728E-07 16317 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 156.48 126.23 1191500000 131690000 115840000 105970000 3049900 2563600 2666200 93858000 80726000 98499000 2818800 2450900 2865900 75514000 73535000 68947000 0 0 0 99542000 115420000 101910000 4735700 3950900 4911300 2846 1503 2758 54865;54866;54867;54868;54869;54870;54871;54872;54873;54874;54875;54876;54877;54878;54879;54880;54881;54882;54883;54884;54885;54886;54887;54888;54889;54890;54891;54892;54893;54894;54895 33707;33708;33709;33710;33711;33712;33713;33714;33715;33716;33717;33718;33719;33720 33716 9 DAPQNAIIGGASLWVMQGK Unmodified 1954.9935 0.99348142 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.663 52.224 2;3 7.828E-14 25560 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 185.95 182.91 5680700000 62107000 59011000 55672000 0 0 0 354130000 360180000 379250000 0 0 0 531760000 500270000 511220000 0 0 0 1006900000 987480000 872710000 0 0 0 2847 993 2759 54896;54897;54898;54899;54900;54901;54902;54903;54904;54905;54906;54907;54908;54909;54910;54911;54912;54913;54914;54915;54916;54917;54918;54919 33721;33722;33723;33724;33725;33726;33727;33728;33729;33730;33731;33732;33733;33734;33735;33736;33737;33738;33739;33740;33741 33726 21 DAPQNAIIGGASLWVMQGK Oxidation (M) 1970.9884 0.98839604 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 50.826 49.625 2 2.836E-06 23906 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 92.65 89.427 27368000 0 0 0 0 0 0 0 0 0 0 0 0 3069700 4205600 2937000 0 0 0 9640600 0 7515100 0 0 0 2848 993 2759 54920;54921;54922;54923;54924 33742 33742 453 1 DAPYFGFEIPNAPGK Unmodified 1621.7777 0.77765821 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 51.444 50.166 2;3 4.9054E-07 24769 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 158.94 152.05 2341200000 158540000 155410000 142830000 0 0 0 210660000 225020000 195550000 2570600 2098600 0 186820000 180790000 186250000 0 0 0 226500000 240970000 224550000 0 0 2645000 2849 60 2760 54925;54926;54927;54928;54929;54930;54931;54932;54933;54934;54935;54936;54937;54938;54939;54940;54941;54942;54943;54944;54945;54946;54947;54948;54949;54950;54951 33743;33744;33745;33746;33747;33748;33749;33750;33751;33752;33753;33754;33755;33756;33757;33758;33759;33760;33761;33762;33763;33764;33765 33743 23 DAQSALTVSETTFGR Unmodified 1581.7635 0.76346471 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 3 2 1 2 2 36.769 35.169 2;3 1.5224E-45 16175 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 279.53 269.87 4569300000 550740000 582080000 552290000 17823000 17182000 17295000 184190000 184680000 165290000 52819000 45876000 39605000 256790000 261250000 256170000 28151000 37505000 39912000 388550000 370220000 357380000 44588000 54824000 64107000 2850 1630 2761 54952;54953;54954;54955;54956;54957;54958;54959;54960;54961;54962;54963;54964;54965;54966;54967;54968;54969;54970;54971;54972;54973;54974;54975;54976;54977;54978;54979;54980;54981;54982;54983;54984;54985;54986;54987;54988;54989;54990;54991;54992;54993;54994;54995;54996;54997;54998;54999 33766;33767;33768;33769;33770;33771;33772;33773;33774;33775;33776;33777;33778;33779;33780;33781;33782;33783;33784;33785;33786;33787;33788;33789;33790;33791;33792;33793;33794;33795;33796;33797;33798;33799;33800;33801;33802;33803;33804;33805;33806;33807;33808;33809 33808 42 DAQVLDELMGER Unmodified 1374.6449 0.64492948 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.938 47.524 2 4.0333E-23 23042 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 227.94 217.24 2000600000 109640000 1467600 99931000 14559000 16747000 16175000 162630000 167520000 170930000 3543800 0 3613400 198530000 188590000 165850000 0 0 0 220420000 218630000 221500000 6717500 7118200 6524600 2851 107 2762 55000;55001;55002;55003;55004;55005;55006;55007;55008;55009;55010;55011;55012;55013;55014;55015;55016;55017;55018;55019;55020 33810;33811;33812;33813;33814;33815;33816;33817;33818;33819;33820;33821;33822;33823;33824;33825 33822 16 DAREPEK Unmodified 843.40865 0.4086456 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 9.8677 10.05 2 0.038031 1685 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 75.109 57.342 31441000 0 0 0 0 0 0 0 0 0 2228800 1742800 1535100 0 0 0 5521600 4683400 5023300 0 0 93821 5722500 0 4889300 2852 1448 2763 55021;55022;55023;55024;55025;55026;55027;55028;55029 33826;33827 33827 2 DAREPEKVALLQK Unmodified 1495.8358 0.83584179 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 2 By MS/MS By matching By matching By MS/MS 1 1 1 1 17.34 17.386 3 0.0079211 4910 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 58.098 55.324 9396800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2937700 1561700 1848400 0 0 0 0 3049000 0 2853 1448 2764 55030;55031;55032;55033 33828;33829 33828 2 DARPPLVVISR Unmodified 1221.7194 0.71935547 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.55 26.403 2;3 1.6997E-05 12054 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 152.7 140.07 1058500000 140630000 135740000 135540000 0 0 0 102730000 96395000 100890000 0 0 0 57290000 50973000 49210000 0 0 0 63753000 67162000 58148000 0 0 0 2854 1193 2765 55034;55035;55036;55037;55038;55039;55040;55041;55042;55043;55044;55045;55046;55047;55048;55049;55050;55051;55052;55053;55054;55055;55056;55057 33830;33831;33832;33833;33834;33835;33836;33837;33838;33839;33840;33841;33842;33843;33844;33845;33846;33847;33848;33849;33850 33841 21 DASAGSENHIALSEQEFFTR Unmodified 2208.0083 0.00833944 1130 P16690 phnN Ribose 1,5-bisphosphate phosphokinase PhnN yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 36.637 36.726 3 0.0025882 12636 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 55.763 54.336 7790100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3744700 1478600 2566800 0 0 0 0 0 0 2855 1130 2766 55058;55059;55060 33851 33851 1 DASDLLR Unmodified 788.40283 0.40283194 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 24.771 23.835 2 0.00082076 10575 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.97 101.5 25414000000 2539700000 1890000000 1824300000 15110000 12223000 9548300 2658700000 2673700000 2719000000 9495900 0 9416500 1628000000 1361300000 1280500000 3574200 3259300 2994700 2175500000 2299000000 2282400000 6056100 4515200 6251500 2856 827 2767 55061;55062;55063;55064;55065;55066;55067;55068;55069;55070;55071;55072;55073;55074;55075;55076;55077;55078;55079;55080;55081;55082;55083;55084;55085;55086;55087 33852;33853;33854;33855;33856;33857;33858;33859;33860;33861;33862;33863;33864;33865;33866;33867;33868;33869;33870;33871;33872;33873;33874;33875;33876;33877 33858 26 DASESDVEASLDR Unmodified 1392.6005 0.6004817 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.987 23.887 2 2.9905E-40 10668 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 283.34 283.34 1188700000 70290000 59657000 56790000 15343000 14476000 13276000 59412000 50765000 51508000 17709000 17194000 16192000 85318000 82852000 71502000 0 0 0 148390000 140940000 150790000 22645000 21409000 22233000 2857 698 2768 55088;55089;55090;55091;55092;55093;55094;55095;55096;55097;55098;55099;55100;55101;55102;55103;55104;55105;55106;55107;55108 33878;33879;33880;33881;33882;33883;33884;33885;33886;33887;33888;33889;33890;33891;33892;33893;33894;33895;33896;33897;33898 33893 21 DASGTINVDIDHK Unmodified 1383.663 0.66302238 809 P0ADU5 ygiW Protein YgiW yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 3 2 1 1 21.257 21.433 2;3 6.2838E-24 8690 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 236.35 231.88 1479000000 131970000 142810000 0 0 0 0 326180000 323600000 336950000 0 0 0 0 0 0 0 0 0 97497000 60548000 59424000 0 0 0 2858 809 2769 55109;55110;55111;55112;55113;55114;55115;55116;55117;55118;55119;55120;55121 33899;33900;33901;33902;33903;33904;33905;33906 33903 7 DASGTINVDIDHKR Unmodified 1539.7641 0.76413341 809 P0ADU5 ygiW Protein YgiW yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 4 3 4 2 2 1 4 4 4 1 3 3 3 3 3 3 15.939 16.733 2;3;4 4.9905E-68 5678 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 323.75 318.65 2365400000 213970000 241150000 192160000 5028100 3677200 3001500 476890000 450200000 380450000 2529400 0 0 56442000 58451000 61186000 0 0 0 78427000 73042000 68814000 0 0 0 2859 809 2770 55122;55123;55124;55125;55126;55127;55128;55129;55130;55131;55132;55133;55134;55135;55136;55137;55138;55139;55140;55141;55142;55143;55144;55145;55146;55147;55148;55149;55150;55151;55152;55153;55154;55155;55156;55157;55158;55159;55160;55161;55162;55163;55164;55165;55166;55167;55168 33907;33908;33909;33910;33911;33912;33913;33914;33915;33916;33917;33918;33919;33920;33921;33922 33921 12 DASSIAVGEVISAVDESVDATR Unmodified 2190.0652 0.065185617 1026 P0AGK8 iscR HTH-type transcriptional regulator IscR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 1 1 1 2 2 1 1 1 2 2 2 2 2 1 55.574 54.134 2;3 1.7033E-34 19981 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 263.75 260.8 556990000 40466000 36324000 44861000 55437000 42563000 43668000 3354800 4611900 4959000 6461400 8954600 8130500 9310400 6955500 12503000 0 0 0 43172000 52349000 48410000 36318000 26626000 21550000 2860 1026 2771 55169;55170;55171;55172;55173;55174;55175;55176;55177;55178;55179;55180;55181;55182;55183;55184;55185;55186;55187;55188;55189;55190;55191;55192;55193;55194;55195;55196;55197;55198;55199;55200;55201;55202 33923;33924;33925;33926;33927;33928;33929;33930 33927 7 DASVVVVSSAISADNPEIVAAHEAR Unmodified 2506.2663 0.26634504 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.012 40.148 3 1.4437E-50 19959 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 209.56 206.46 334030000 24298000 16572000 22050000 1379100 1466300 990230 25243000 30297000 26557000 4663300 4836700 4678100 27619000 16778000 19165000 0 0 0 34623000 35690000 32959000 0 2331500 1840600 2861 1145 2772 55203;55204;55205;55206;55207;55208;55209;55210;55211;55212;55213;55214;55215;55216;55217;55218;55219;55220;55221;55222 33931;33932;33933;33934;33935;33936;33937;33938;33939 33931 4 DATGIDPVSLIAFDK Unmodified 1560.8035 0.80353861 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 2 1 2 1 1 1 54.928 53.646 2 2.8694E-11 26306 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.42 154.37 4526800000 556790000 517240000 508710000 18831000 19550000 15405000 126240000 158780000 137620000 48093000 44954000 43743000 304970000 251320000 269270000 59743000 61551000 37380000 379590000 420830000 396950000 53553000 46192000 49443000 2862 1630 2773 55223;55224;55225;55226;55227;55228;55229;55230;55231;55232;55233;55234;55235;55236;55237;55238;55239;55240;55241;55242;55243;55244;55245;55246;55247;55248;55249;55250;55251;55252 33940;33941;33942;33943;33944;33945;33946;33947;33948;33949;33950;33951;33952;33953;33954 33944 15 DATGIDPVSLIAFDKVVMTADAVK Unmodified 2475.2931 0.29307706 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.049 54.157 3 6.1087E-10 20642 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 114.2 108.04 115140000 0 0 0 8645000 8724900 5414300 0 0 0 0 0 0 0 0 0 25013000 23477000 20157000 0 0 0 7114100 9502500 7090900 2863 1630 2774 55253;55254;55255;55256;55257;55258;55259;55260;55261 33955;33956;33957 33956 3 DATKAEIK Unmodified 874.476 0.47599688 822 P0ADZ0 rplW 50S ribosomal protein L23 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 9.3461 9.7157 2 0.00043617 2032 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 149.82 70.347 149350000 0 0 0 4300800 5218200 3510500 0 0 0 17016000 12489000 9810800 0 0 0 19372000 21072000 22711000 0 0 0 20481000 13372000 0 2864 822 2775 55262;55263;55264;55265;55266;55267;55268;55269;55270;55271;55272;55273 33958;33959;33960;33961;33962;33963;33964;33965;33966;33967;33968 33963 11 DATSATTTTSLGGLFK Unmodified 1569.7886 0.78861683 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 42.885 40.992 2 6.2422E-24 20476 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 214.26 194.63 1309300000 177450000 154450000 152140000 0 0 0 87399000 82635000 77872000 9946400 7312900 10492000 69933000 64781000 72982000 0 0 0 108610000 115900000 99912000 5808300 5875900 5797600 2865 279 2776 55274;55275;55276;55277;55278;55279;55280;55281;55282;55283;55284;55285;55286;55287;55288;55289;55290;55291;55292;55293;55294;55295 33969;33970;33971;33972;33973;33974;33975;33976;33977;33978;33979;33980;33981;33982;33983;33984 33972 14 DAVAEMK Unmodified 762.35819 0.35818993 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 12.791 13.628 1;2 0.0038645 3892 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 120.62 98.919 726080000 64462000 71953000 80817000 0 0 0 80942000 80315000 82715000 0 0 0 72215000 21288000 65296000 0 0 0 68532000 18292000 19247000 0 0 0 2866 319 2777 55296;55297;55298;55299;55300;55301;55302;55303;55304;55305;55306;55307;55308;55309;55310;55311;55312;55313;55314;55315;55316;55317 33985;33986;33987;33988;33989;33990;33991 33990 7 DAVEDVILNR Unmodified 1142.5932 0.5931519 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 37.386 35.583 2 0.0043367 17221 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 76.064 50.505 111990000 12230000 16981000 15960000 0 0 0 10951000 0 1685400 0 1956000 2339300 6026400 0 0 0 0 0 17807000 13620000 12439000 0 0 0 2867 1083 2778 55318;55319;55320;55321;55322;55323;55324;55325;55326;55327;55328 33992;33993 33992 0 DAVGCADSFVR Unmodified 1195.5292 0.52917144 800 P0ADQ7 ygaM Uncharacterized protein YgaM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.081 26.713 2 1.1715E-10 12451 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 196.99 188.46 3563500000 291160000 305210000 258030000 67020000 67169000 66011000 608560000 639610000 610230000 60176000 63315000 78066000 36088000 33894000 30887000 0 0 0 95544000 98102000 81778000 24140000 23374000 25175000 2868 800 2779 55329;55330;55331;55332;55333;55334;55335;55336;55337;55338;55339;55340;55341;55342;55343;55344;55345;55346;55347;55348;55349 33994;33995;33996;33997;33998;33999;34000;34001;34002;34003;34004;34005;34006;34007;34008;34009;34010 33997 17 DAVIPGLQK Unmodified 939.53893 0.53893149 798 P0ADP9 yihD Protein YihD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 29.731 28.38 1;2 0.0012413 13166 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.55 75.014 1437900000 211000000 204540000 191630000 3304000 2411000 2732100 125750000 126660000 121230000 0 0 0 76078000 72046000 68060000 0 0 0 73403000 83932000 73604000 0 0 1465800 2869 798 2780 55350;55351;55352;55353;55354;55355;55356;55357;55358;55359;55360;55361;55362;55363;55364;55365;55366;55367;55368;55369;55370;55371;55372;55373;55374;55375;55376;55377 34011;34012;34013;34014;34015;34016;34017;34018;34019;34020;34021;34022 34018 9 DAVIPGLQKDYEEDFKTALLR Unmodified 2420.2587 0.25874047 798 P0ADP9 yihD Protein YihD yes yes 0 0 2 By MS/MS By matching By matching 1 1 1 47.257 45.838 3 0.0037992 16405 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 54.637 50.833 6075700 0 0 0 2241200 1739700 2094900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2870 798 2781 55378;55379;55380 34023 34023 1 DAVNGTISYTNEAGK Unmodified 1538.7213 0.72126554 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 22.359 22.035 2 5.0339E-15 9395 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 189.43 172.8 766770000 189230000 186780000 189830000 0 0 0 33909000 36687000 39956000 0 0 0 13442000 12649000 11612000 0 0 0 16486000 19929000 16262000 0 0 0 2871 195 2782 55381;55382;55383;55384;55385;55386;55387;55388;55389;55390;55391;55392;55393;55394;55395 34024;34025;34026;34027;34028;34029;34030;34031 34028 5 DAWAFVER Unmodified 992.47158 0.4715802 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 40.484 38.353 2 0.00081197 18935 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.13 117.14 142240000 0 0 0 0 0 0 42826000 43656000 43988000 2743700 2795900 3532100 0 1263900 1432200 0 0 0 0 0 0 0 0 0 2872 722 2783 55396;55397;55398;55399;55400;55401;55402;55403 34032;34033;34034;34035 34035 4 DAWATGNPALR Unmodified 1170.5782 0.57817054 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.604 27.128 2 0.00025046 10131 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 98.033 94.099 297840000 17370000 15002000 13823000 4275600 4204300 3740300 29627000 25347000 23495000 18659000 17142000 17814000 21983000 17695000 15441000 0 0 0 16786000 0 19193000 5509400 4993800 5734800 2873 189 2784 55404;55405;55406;55407;55408;55409;55410;55411;55412;55413;55414;55415;55416;55417;55418;55419;55420;55421;55422;55423 34036;34037;34038;34039;34040 34037 5 DAWDAMAHHQMVVDEQGNLVAVGR Unmodified 2648.2224 0.22238851 799 P0ADQ2 yiiD Uncharacterized protein YiiD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 39.829 38.36 3;4 3.3594E-22 18747 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 142.42 141.24 135080000 31696000 37522000 29729000 0 0 0 0 0 0 0 0 0 8921700 0 7883200 0 0 0 0 19324000 0 0 0 0 2874 799 2785 55424;55425;55426;55427;55428;55429;55430;55431;55432;55433 34041;34042;34043;34044;34045;34046;34047 34041 7 DAWLDYDPVSLISQGQR Unmodified 1961.9483 0.94830537 1595 P51025 frmB S-formylglutathione hydrolase FrmB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 55.008 53.473 2 0.037488 26350 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 48.704 22.345 84374000 0 0 0 2407600 0 0 16091000 17252000 15777000 0 0 0 0 0 0 0 0 0 15125000 17721000 0 0 0 0 2875 1595 2786 55434;55435;55436;55437;55438;55439 34048 34048 0 DAWMIVQR Unmodified 1017.5066 0.5065855 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 37.388 35.771 2 0.00044633 14265 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 138.62 110.1 906060000 0 0 6062300 0 466340 0 94048000 90949000 86127000 18112000 16892000 16810000 81554000 66110000 66539000 8308500 5772500 4862600 112450000 100640000 87290000 13489000 14017000 15547000 2876 723 2787 55440;55441;55442;55443;55444;55445;55446;55447;55448;55449;55450;55451;55452;55453;55454;55455;55456;55457;55458;55459;55460;55461 34049;34050;34051;34052;34053;34054;34055;34056;34057;34058;34059;34060;34061 34051 10 DAYLIGR Unmodified 806.42865 0.42865276 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 25.039 23.909 2 0.0016618 10942 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.04 73.806 900000000 94885000 86361000 89651000 0 0 0 192030000 175300000 167010000 1487600 832020 645040 11902000 12560000 11719000 0 0 0 19843000 18012000 17764000 0 0 0 2877 1191 2788 55462;55463;55464;55465;55466;55467;55468;55469;55470;55471;55472;55473;55474;55475;55476;55477;55478 34062;34063;34064;34065;34066 34062 5 DAYSFHTSQESLQETYDAMYAAYSK Unmodified 2905.2389 0.23886924 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.042 48.636 2;3 3.6249E-72 23706 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 347.06 343.83 1526100000 126490000 105360000 100220000 0 0 0 112340000 108300000 107620000 0 0 0 120860000 110640000 131880000 0 0 0 171280000 158380000 172740000 0 0 0 2878 1120 2789 55479;55480;55481;55482;55483;55484;55485;55486;55487;55488;55489;55490;55491;55492;55493;55494;55495;55496;55497;55498;55499;55500;55501;55502 34067;34068;34069;34070;34071;34072;34073;34074;34075;34076;34077;34078;34079;34080;34081;34082;34083 34072 17 DCAGQPELIFIATGSEVELAVAAYEK Unmodified 2780.3579 0.35786216 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 55.877 54.437 2 7.3841E-11 25889 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 132.13 127.82 37528000 0 0 0 0 0 0 310720 0 0 0 0 0 7113300 9919100 10119000 0 0 0 0 10066000 0 0 0 0 2879 1299 2790 55503;55504;55505;55506;55507 34084;34085;34086 34086 3 DCAVYSR Unmodified 869.37015 0.3701516 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.301 13.093 2 0.0014353 3790 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.05 115.39 257310000 25091000 19191000 18439000 0 0 0 30631000 23111000 26851000 0 0 542320 21841000 16028000 15825000 0 0 0 20522000 20314000 18921000 0 0 0 2880 85 2791 55508;55509;55510;55511;55512;55513;55514;55515;55516;55517;55518;55519;55520 34087;34088;34089;34090;34091;34092;34093 34091 7 DCDIEPELKPIR Unmodified 1483.7341 0.73407884 1333 P29745 pepT Peptidase T yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 27.939 26.754 2;3 3.569E-08 11643 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 190.02 189.15 2021200000 247420000 165980000 191940000 821470 769050 0 204780000 223330000 187900000 0 0 0 175340000 126650000 124090000 0 0 0 118810000 123800000 128880000 0 0 638030 2881 1333 2792 55521;55522;55523;55524;55525;55526;55527;55528;55529;55530;55531;55532;55533;55534;55535;55536;55537;55538;55539;55540;55541;55542;55543;55544;55545;55546;55547 34094;34095;34096;34097;34098;34099;34100;34101;34102;34103;34104;34105;34106;34107;34108;34109;34110;34111;34112;34113;34114;34115;34116 34116 23 DCFALECEAVK Unmodified 1340.5741 0.57407272 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 32.383 31.009 2 0.00020622 14708 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 103.7 103.7 1485900000 151850000 150410000 154290000 0 0 0 93656000 89450000 96721000 0 0 0 106160000 86582000 92351000 0 0 0 161480000 160980000 140390000 0 1546100 0 2882 1210 2793 55548;55549;55550;55551;55552;55553;55554;55555;55556;55557;55558;55559;55560 34117;34118;34119;34120;34121;34122;34123;34124;34125 34122 9 DCFALECEAVKR Unmodified 1496.6752 0.67518375 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 25.61 24.487 2;3 1.5748E-05 8689 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 97.779 96.695 610250000 56525000 50207000 42726000 13325000 12060000 11900000 33879000 12111000 33468000 26390000 27690000 27804000 23070000 22463000 22669000 5163400 4066600 4117100 41784000 41749000 49037000 14580000 14450000 19022000 2883 1210 2794 55561;55562;55563;55564;55565;55566;55567;55568;55569;55570;55571;55572;55573;55574;55575;55576;55577;55578;55579;55580;55581;55582;55583;55584;55585;55586;55587;55588;55589;55590;55591;55592;55593;55594;55595;55596;55597;55598;55599;55600;55601;55602;55603;55604;55605 34126;34127;34128;34129;34130;34131;34132;34133;34134;34135;34136;34137;34138;34139;34140;34141;34142;34143;34144;34145;34146;34147;34148;34149;34150;34151;34152;34153;34154;34155;34156;34157;34158;34159;34160;34161 34137 36 DCIAFGDGMNDAEMLSMAGK Unmodified 2131.8683 0.86828218 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.491 50.244 2 2.2079E-14 24687 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 145.43 145.43 134070000 10984000 7500400 7651900 0 0 0 9278900 12157000 10428000 0 0 0 11621000 9854200 10122000 0 0 0 15077000 14119000 15275000 0 0 0 2884 1313 2795 55606;55607;55608;55609;55610;55611;55612;55613;55614;55615;55616;55617 34162;34163;34164;34165 34163 4 DCILVDLASVK Unmodified 1231.6482 0.64822394 153 P07023 tyrA T-protein;Chorismate mutase;Prephenate dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 49.558 48.183 2 0.00091523 23513 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 84.17 57.656 95935000 13015000 11369000 10930000 0 0 0 0 0 16542000 0 0 0 0 0 0 0 0 0 14998000 14292000 14789000 0 0 0 2885 153 2796 55618;55619;55620;55621;55622;55623;55624;55625;55626 34166;34167;34168;34169;34170;34171;34172;34173 34167 8 DCVLVDDMIDTGGTLCK Unmodified 1910.8424 0.84238501 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 2 3 3 2 2 2 50.634 49.411 2;3 2.182E-24 23091 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 257.52 255.93 3373100000 339280000 288020000 263730000 11348000 11540000 12844000 150560000 151450000 144410000 16797000 12690000 13561000 346700000 296340000 305760000 25427000 19173000 21173000 286680000 294980000 270480000 34459000 30635000 25055000 2886 300 2797 55627;55628;55629;55630;55631;55632;55633;55634;55635;55636;55637;55638;55639;55640;55641;55642;55643;55644;55645;55646;55647;55648;55649;55650;55651;55652;55653;55654;55655;55656;55657;55658;55659;55660;55661;55662;55663;55664;55665;55666;55667;55668;55669;55670;55671;55672;55673;55674;55675;55676;55677;55678;55679;55680;55681 34174;34175;34176;34177;34178;34179;34180;34181;34182;34183;34184;34185;34186;34187;34188;34189;34190;34191;34192;34193;34194;34195;34196;34197;34198;34199;34200;34201;34202;34203;34204;34205;34206;34207;34208;34209;34210;34211;34212;34213 34210 37 DCVNAKGEGMVLTGPK Unmodified 1674.8069 0.8069262 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 21.482 21.269 3 1.2165E-08 6256 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 99.451 98.944 29204000 0 0 0 0 0 0 0 0 0 0 1958600 0 0 0 0 8497600 6695100 7515100 0 0 0 0 4537700 0 2887 458 2798 55682;55683;55684;55685;55686 34214;34215;34216;34217 34216 4 DCVVVVR Unmodified 845.44292 0.44292261 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 18.725 19.283 2 0.0020465 6869 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 119.22 94.223 584030000 4667300 5076900 0 0 0 0 83961000 82366000 81296000 0 0 0 48518000 46685000 40852000 0 0 0 67558000 64787000 58259000 0 0 0 2888 785 2799 55687;55688;55689;55690;55691;55692;55693;55694;55695;55696;55697 34218;34219;34220;34221;34222;34223;34224;34225;34226;34227;34228;34229 34229 12 DDAAYYFASVVK Unmodified 1347.6347 0.63468237 1583 P45955 ybgF Uncharacterized protein YbgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.147 44.657 2 0.00010474 22177 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 93.058 89.945 265480000 25315000 29547000 23300000 0 0 0 14924000 17034000 13231000 0 0 0 20172000 19184000 20211000 0 0 0 23547000 28334000 30683000 0 0 0 2889 1583 2800 55698;55699;55700;55701;55702;55703;55704;55705;55706;55707;55708;55709 34230;34231;34232;34233;34234;34235;34236;34237;34238;34239;34240;34241 34230 11 DDAEALKK Unmodified 888.45526 0.45526144 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1 2 2 1 1 2 2 1 1 2 1 1 2 2 2 1 1 1 10.682 11.316 2 0.00028448 2531 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 151.29 117.93 17578000000 2216400000 2066900000 1971900000 7394900 1571200 7228300 1061300000 883000000 925900000 48742000 58485000 64275000 1086300000 1124300000 1025600000 1346800 37598000 0 1654500000 1770300000 1423600000 49965000 46268000 45739000 2890 351 2801 55710;55711;55712;55713;55714;55715;55716;55717;55718;55719;55720;55721;55722;55723;55724;55725;55726;55727;55728;55729;55730;55731;55732;55733;55734;55735;55736;55737;55738;55739;55740;55741;55742 34242;34243;34244;34245;34246;34247;34248;34249;34250;34251;34252;34253;34254;34255 34244 14 DDALAFVDK Unmodified 992.48148 0.48147619 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.996 33.54 2 0.0047769 15994 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 76.827 65.953 659600000 79337000 76732000 70370000 0 0 0 41432000 38337000 40021000 0 0 0 52848000 47389000 56288000 0 0 0 76528000 80319000 0 0 0 0 2891 181 2802 55743;55744;55745;55746;55747;55748;55749;55750;55751;55752;55753 34256;34257;34258;34259;34260;34261;34262;34263;34264 34260 7 DDANIHAIQR Unmodified 1151.5683 0.56833414 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 13.024 13.831 2;3 1.0339E-12 4117 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 220.1 211.15 4260300000 445370000 378140000 451250000 0 0 0 384340000 380830000 343170000 847540 0 0 349000000 334260000 295140000 0 0 0 307210000 311650000 279060000 0 0 0 2892 1658 2803 55754;55755;55756;55757;55758;55759;55760;55761;55762;55763;55764;55765;55766;55767;55768;55769;55770;55771;55772;55773;55774;55775;55776;55777;55778 34265;34266;34267;34268;34269;34270;34271;34272;34273;34274;34275;34276;34277;34278;34279;34280;34281 34268 17 DDANTLHIEPLPYSLEE Unmodified 1954.916 0.91600218 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.086 51.661 2 3.5163E-06 25575 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.34 124.36 99984000 14565000 0 15419000 0 0 0 7305800 8141900 4405900 0 0 0 7631400 7340400 8248300 0 0 0 7878300 10559000 8488200 0 0 0 2893 784 2804 55779;55780;55781;55782;55783;55784;55785;55786;55787;55788;55789 34282;34283 34282 2 DDASSEHYIK Unmodified 1163.5095 0.50948185 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.141 12.939 2 0.00050697 3651 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.582 91.014 45918000 10773000 8157100 9213200 0 0 0 3618900 3059300 2594700 0 0 0 2559900 0 2937600 0 0 0 0 0 3004400 0 0 0 2894 1878 2805 55790;55791;55792;55793;55794;55795;55796;55797;55798 34284 34284 1 DDDILILTADHGCDPTWTGTDHTR Unmodified 2724.2086 0.20857217 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 3 3 3 3 3 3 41.335 39.665 2;3;4 8.3781E-41 19254 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 261.59 239.38 10010000000 953130000 915520000 793160000 878900 0 0 1067800000 1092400000 1089200000 0 0 0 640740000 637150000 636130000 0 0 0 735340000 737610000 710930000 0 0 0 2895 256 2806 55799;55800;55801;55802;55803;55804;55805;55806;55807;55808;55809;55810;55811;55812;55813;55814;55815;55816;55817;55818;55819;55820;55821;55822;55823;55824;55825;55826;55827;55828;55829;55830;55831;55832;55833;55834;55835 34285;34286;34287;34288;34289;34290;34291;34292;34293;34294;34295;34296;34297;34298;34299;34300;34301;34302;34303;34304;34305;34306;34307;34308;34309 34295 25 DDDNKPLVYEPGLHFK Unmodified 1885.921 0.92102798 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 31.248 29.718 3;4 5.8744E-05 14358 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.651 79.734 1389000000 49550000 69416000 54798000 6870100 6022500 6115200 133210000 127860000 160030000 13830000 14063000 14190000 83422000 97991000 79585000 0 2928200 0 137710000 145850000 154110000 9463700 10252000 11685000 2896 648 2807 55836;55837;55838;55839;55840;55841;55842;55843;55844;55845;55846;55847;55848;55849;55850;55851;55852;55853;55854;55855;55856;55857;55858;55859;55860;55861;55862;55863;55864;55865;55866;55867;55868;55869;55870;55871;55872;55873;55874;55875;55876;55877;55878 34310;34311;34312;34313;34314;34315;34316;34317;34318;34319;34320;34321;34322;34323;34324;34325;34326;34327;34328;34329;34330;34331;34332;34333;34334;34335 34315 26 DDDNTYHLK Unmodified 1119.4833 0.4832671 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 12.898 13.649 2 0.038209 4150 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 57.59 54.018 20823000 6199200 5444300 6715700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2464300 0 0 0 0 2897 1213 2808 55879;55880;55881;55882 34336 34336 1 DDDPSFDELVALAVETGR Unmodified 1947.9062 0.90616578 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 2 2 2 2 2 1 1 1 2 2 2 2 1 2 2 2 2 1 2 1 2 2 2 55.809 54.603 2;3 1.3692E-56 21282 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 293.43 288.05 1639100000 13119000 24698000 20066000 14314000 16627000 16419000 52994000 53074000 58385000 149580000 152260000 135000000 55074000 33421000 65917000 194270000 186390000 151850000 36362000 52720000 41823000 40969000 43933000 29853000 2898 1745 2809 55883;55884;55885;55886;55887;55888;55889;55890;55891;55892;55893;55894;55895;55896;55897;55898;55899;55900;55901;55902;55903;55904;55905;55906;55907;55908;55909;55910;55911;55912;55913;55914;55915;55916;55917;55918;55919;55920;55921;55922;55923 34337;34338;34339;34340;34341;34342;34343;34344;34345;34346 34341 10 DDDSYDEDVEDDEGVGEVR Unmodified 2156.8142 0.81417547 1882 P77173 zipA Cell division protein ZipA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 31.953 30.566 2 1.8895E-55 14495 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 278.46 278.46 71975000 8716600 5834700 5436100 735940 0 871300 7391900 6778000 6082100 0 0 0 4537500 5793100 5200900 0 0 0 7119400 7477000 0 0 0 0 2899 1882 2810 55924;55925;55926;55927;55928;55929;55930;55931;55932;55933;55934;55935;55936 34347 34347 1 DDDTADILTAASR Unmodified 1362.6263 0.62630252 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 35.998 34.254 2;3 1.7069E-12 16769 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 193.21 188.59 1112300000 317060000 313420000 280280000 0 0 0 76825000 58096000 60118000 0 2558900 2820000 1078600 0 0 0 0 0 0 0 0 0 0 0 2900 677 2811 55937;55938;55939;55940;55941;55942;55943;55944;55945;55946;55947;55948;55949;55950;55951 34348;34349;34350;34351;34352;34353;34354;34355;34356 34348 8 DDDVVDAEFEEVK Unmodified 1508.6518 0.65184857 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.794 36.928 2 1.9543E-09 18254 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.48 156.34 1822800000 179370000 166930000 134250000 611360 0 0 171760000 158400000 142010000 3185700 3485400 2744900 127920000 123840000 101050000 0 0 0 168740000 169060000 167670000 849860 0 963550 2901 293 2812 55952;55953;55954;55955;55956;55957;55958;55959;55960;55961;55962;55963;55964;55965;55966;55967;55968;55969 34357;34358;34359;34360;34361;34362;34363;34364;34365;34366;34367;34368;34369 34358 12 DDDVVDAEFEEVKDK Unmodified 1751.7738 0.77375462 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.188 31.748 2 2.6673E-20 15385 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 219.92 217.78 260010000 25951000 30143000 23042000 0 0 0 24889000 20129000 21058000 0 0 0 14643000 12552000 11564000 0 0 0 22089000 24438000 29513000 0 0 0 2902 293 2813 55970;55971;55972;55973;55974;55975;55976;55977;55978;55979;55980;55981 34370;34371;34372;34373;34374;34375;34376;34377;34378;34379;34380;34381 34370 12 DDDVVDAEFEEVKDKK Unmodified 1879.8687 0.86871764 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.87 26.559 3 3.0254E-14 12038 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.86 145.3 373190000 29617000 35707000 25532000 1826400 1757000 1479100 35695000 28844000 33065000 0 10500000 10883000 17159000 17644000 14797000 0 0 0 36529000 32869000 32073000 2314600 2284200 2611500 2903 293 2814 55982;55983;55984;55985;55986;55987;55988;55989;55990;55991;55992;55993;55994;55995;55996;55997;55998;55999;56000;56001 34382;34383;34384;34385;34386;34387;34388;34389;34390;34391;34392;34393;34394 34390 13 DDEILTHPVFNR Unmodified 1454.7154 0.7153923 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 31.837 30.283 2;3 8.2338E-17 13613 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 209.6 201.38 4964800000 319000000 305310000 318040000 11581000 11293000 11487000 469370000 477450000 454960000 18813000 16742000 11705000 328580000 288400000 311580000 0 6069800 0 528990000 514710000 524180000 13052000 12809000 10715000 2904 1409 2815 56002;56003;56004;56005;56006;56007;56008;56009;56010;56011;56012;56013;56014;56015;56016;56017;56018;56019;56020;56021;56022;56023;56024;56025;56026;56027;56028;56029;56030;56031;56032;56033;56034;56035;56036;56037;56038;56039;56040;56041;56042;56043;56044 34395;34396;34397;34398;34399;34400;34401;34402;34403;34404;34405;34406;34407;34408;34409;34410;34411;34412;34413;34414;34415;34416;34417;34418;34419 34419 22 DDELTAIESNR Unmodified 1261.5786 0.57862405 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 28.697 27.415 2;3 2.3308E-26 9199 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 252.77 246.66 756880000 0 0 0 0 0 0 8481400 7308800 5166700 78412000 102150000 91508000 8225200 7412000 8108800 108820000 77082000 78956000 10459000 10225000 8119400 44994000 48374000 53087000 2905 1616 2816 56045;56046;56047;56048;56049;56050;56051;56052;56053;56054;56055;56056;56057;56058;56059;56060;56061;56062;56063;56064;56065;56066;56067;56068;56069;56070;56071 34420;34421;34422;34423;34424;34425;34426;34427;34428;34429;34430;34431;34432 34421 12 DDEQMAAFR Unmodified 1081.4499 0.44985848 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.682 23.585 2 0.0048202 10687 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 83.753 81.175 61375000 5823500 5969500 3356100 0 0 0 4212300 4955200 4657700 1228000 1410900 1600500 3796700 3482600 2864600 0 0 0 5456900 6783600 5777000 0 0 0 2906 1116 2817 56072;56073;56074;56075;56076;56077;56078;56079;56080;56081;56082;56083;56084;56085;56086 34433;34434 34433 0 DDERYPGHDPR Unmodified 1355.5854 0.58544076 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 10.845 11.661 2;3 8.8976E-05 2860 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.162 90.034 6033700000 858650000 714560000 744900000 0 0 0 507390000 409450000 429010000 0 0 0 266810000 246080000 257090000 0 0 0 544950000 511110000 543710000 0 0 0 2907 1652 2818 56087;56088;56089;56090;56091;56092;56093;56094;56095;56096;56097;56098;56099;56100;56101;56102;56103;56104;56105;56106;56107;56108;56109;56110 34435;34436;34437;34438;34439;34440;34441;34442;34443;34444;34445;34446;34447;34448;34449;34450;34451;34452;34453;34454;34455;34456;34457;34458 34448 24 DDETLSK Unmodified 806.36578 0.36577773 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 10.87 11.725 2 0.015409 2773 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 81.784 73.101 320060000 0 0 0 0 0 0 59534000 57704000 62379000 0 0 0 24765000 25851000 20129000 0 0 0 32186000 30560000 6951300 0 0 0 2908 321 2819 56111;56112;56113;56114;56115;56116;56117;56118;56119 34459;34460;34461;34462;34463;34464;34465 34463 6 DDETLSKK Unmodified 934.46074 0.46074075 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 7.0793 7.8993 2 0.0041232 1694 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.374 21.76 2678900000 847090000 873220000 957860000 0 0 0 295700 0 0 0 0 0 0 0 115130 0 0 0 0 360200 0 0 0 0 2909 321 2820 56120;56121;56122;56123;56124;56125 34466 34466 1 DDEVIVLTGK Unmodified 1087.5761 0.57610486 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.988 31.577 2 0.00012302 14905 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128.36 110.98 2170100000 337930000 353350000 287800000 4462500 3886900 3873900 105320000 98841000 104860000 0 15170000 14129000 90160000 91861000 97483000 5501500 6269200 5599100 187710000 181940000 137190000 12299000 11653000 12800000 2910 1625 2821 56126;56127;56128;56129;56130;56131;56132;56133;56134;56135;56136;56137;56138;56139;56140;56141;56142;56143;56144;56145;56146;56147;56148;56149 34467;34468;34469;34470;34471;34472;34473;34474;34475;34476;34477;34478;34479;34480;34481;34482;34483;34484 34476 17 DDEWFMNR Unmodified 1111.4393 0.4392938 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.552 36.878 2 0.00022321 18093 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 151.51 151.51 195200000 11993000 11168000 10140000 0 0 0 15053000 21533000 19613000 0 0 0 14992000 14408000 11274000 0 0 0 24968000 21236000 18821000 0 0 0 2911 1313 2822 56150;56151;56152;56153;56154;56155;56156;56157;56158;56159;56160;56161 34485;34486;34487;34488;34489;34490;34491;34492 34487 8 DDFDPAR Unmodified 834.3508 0.35079637 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS 1 1 16.992 17.692 2 0.026886 6295 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.715 62.702 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2912 49 2823 56162;56163 34493;34494 34494 2 DDFQYQYVDIR Unmodified 1460.6572 0.65720872 1722 P68688 grxA Glutaredoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.239 38.574 2 0.00014049 18133 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 129.38 129.38 381640000 36590000 26878000 38521000 0 0 0 26735000 27434000 24474000 0 0 0 33626000 34804000 28002000 0 0 0 33468000 35224000 35886000 0 0 0 2913 1722 2824 56164;56165;56166;56167;56168;56169;56170;56171;56172;56173;56174;56175 34495;34496;34497;34498;34499;34500;34501 34499 7 DDGGLNVINK Unmodified 1043.5247 0.52473799 476 P0A901 blc Outer membrane lipoprotein Blc yes yes 0 0 0 By MS/MS By MS/MS 1 1 23.942 22.868 2 0.00016817 10082 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.458 84.787 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2914 476 2825 56176;56177 34502;34503 34503 2 DDGSMMLVLPQECR Unmodified 1649.7211 0.72114766 1834 P76216 astB N-succinylarginine dihydrolase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 45.882 44.427 2 6.8269E-08 21812 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 139.31 138.78 57153000 19173000 19179000 17482000 0 0 0 0 0 1319000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2915 1834 2826 56178;56179;56180;56181 34504;34505 34504 2 DDGSYVPGR Unmodified 964.42502 0.42502394 1157 P19319 narZ Respiratory nitrate reductase 2 alpha chain yes yes 0 0 0 By MS/MS 1 16.827 16.933 2 0.015616 4872 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 64.265 59.908 2230500 0 0 0 0 0 0 0 0 0 0 0 2230500 0 0 0 0 0 0 0 0 0 0 0 0 2916 1157 2827 56182 34506 34506 1 DDGYLPEALLNYLVR Unmodified 1749.8938 0.8937506 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 2 1 1 55.831 54.332 2 2.9216E-06 25918 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 108.7 105.27 191360000 10915000 9793700 14844000 0 0 0 11138000 6650400 13608000 0 0 0 18162000 20078000 0 0 0 0 33621000 30493000 22062000 0 0 0 2917 92 2828 56183;56184;56185;56186;56187;56188;56189;56190;56191;56192;56193;56194;56195;56196 34507;34508;34509;34510;34511;34512;34513;34514 34513 7 DDIAQLLNK Unmodified 1028.5502 0.55022446 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.263 35.523 2 0.00025537 17183 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.74 110.52 155660000 16516000 15714000 11018000 0 0 0 11816000 13756000 13314000 0 802780 0 11181000 11420000 12789000 0 0 0 0 16722000 20608000 0 0 0 2918 1617 2829 56197;56198;56199;56200;56201;56202;56203;56204;56205;56206;56207;56208 34515;34516;34517;34518;34519;34520;34521;34522;34523;34524 34518 10 DDIIDVMK Oxidation (M) 963.4583 0.45829791 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 5 5 3 1 3 3 3 1 1 4 5 4 28.45 27.161 2 0.048975 9801 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 58.917 33.18 171120000 4083300 0 0 0 0 0 0 0 0 23333000 20895000 14076000 1529100 0 0 11577000 10670000 15273000 0 1504700 1942000 21639000 21475000 23122000 2919 463 2830 56209;56210;56211;56212;56213;56214;56215;56216;56217;56218;56219;56220;56221;56222;56223;56224;56225;56226;56227;56228;56229;56230;56231;56232;56233;56234;56235;56236;56237;56238;56239;56240;56241;56242;56243;56244;56245;56246;56247 34525;34526;34527;34528;34529;34530;34531;34532;34533;34534;34535;34536;34537;34538;34539;34540 34533 254 12 DDIIDVMK Unmodified 947.46338 0.46338328 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 37.342 35.767 1;2 0.0023384 17528 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.33 23.586 10679000000 224470000 207140000 185520000 2099200 2718800 2153800 175440000 176060000 171260000 32635000 557190000 517080000 198910000 179420000 148600000 2109700000 1385100000 1728300000 296510000 262100000 247550000 609230000 628570000 631030000 2920 463 2830 56248;56249;56250;56251;56252;56253;56254;56255;56256;56257;56258;56259;56260;56261;56262;56263;56264;56265;56266;56267;56268;56269;56270;56271;56272;56273;56274;56275;56276;56277;56278;56279;56280;56281;56282;56283;56284;56285;56286;56287;56288;56289;56290;56291 34541;34542;34543;34544;34545;34546;34547;34548;34549;34550;34551;34552;34553;34554;34555;34556;34557;34558;34559;34560;34561;34562;34563;34564;34565;34566;34567;34568;34569;34570;34571 34551 29 DDIIDVMKK Oxidation (M) 1091.5533 0.55326092 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 4 2 4 3 4 3 23.176 22.577 2;3 0.0036081 4954 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 73.665 50.089 225870000 0 0 0 0 0 0 0 0 0 6292300 18561000 15016000 0 0 0 33062000 33535000 48939000 0 0 0 24917000 25765000 19781000 2921 463 2831 56292;56293;56294;56295;56296;56297;56298;56299;56300;56301;56302;56303;56304;56305;56306;56307;56308;56309;56310;56311;56312;56313;56314;56315;56316;56317;56318;56319;56320;56321 34572;34573;34574;34575;34576;34577;34578;34579;34580;34581;34582;34583;34584;34585;34586;34587;34588;34589 34587 254 17 DDIIDVMKK Unmodified 1075.5583 0.5583463 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 3 3 3 2 2 2 28.474 27.375 2;3 0.00011363 9734 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 138.54 127.03 12174000000 0 0 0 1075400 0 1061100 0 0 0 635760000 817750000 658390000 0 0 0 2930000000 2012700000 2073500000 0 0 0 944050000 1007300000 1092800000 2922 463 2831 56322;56323;56324;56325;56326;56327;56328;56329;56330;56331;56332;56333;56334;56335;56336;56337;56338;56339;56340;56341;56342;56343;56344 34590;34591;34592;34593;34594;34595;34596;34597;34598;34599;34600;34601;34602;34603;34604;34605;34606;34607;34608;34609;34610;34611;34612;34613 34608 24 DDIVWTYSGVRPLCDDESDSPQAITR Unmodified 2994.3665 0.36652937 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 2 2 3 3 3 2 3 3 1 1 1 3 2 2 2 2 1 45.747 44.168 2;3;4 8.3043E-84 21810 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 357.72 340.5 3115000000 12586000 11152000 5929500 0 0 0 289430000 260970000 235370000 363190000 445720000 427780000 112580000 112480000 119280000 54114000 49261000 40554000 139800000 130370000 138620000 61832000 57512000 46450000 2923 1088 2832 56345;56346;56347;56348;56349;56350;56351;56352;56353;56354;56355;56356;56357;56358;56359;56360;56361;56362;56363;56364;56365;56366;56367;56368;56369;56370;56371;56372;56373;56374;56375;56376;56377;56378;56379;56380;56381;56382;56383;56384;56385;56386 34614;34615;34616;34617;34618;34619;34620;34621;34622;34623;34624;34625;34626;34627;34628;34629;34630;34631;34632;34633;34634;34635;34636;34637 34627 24 DDKEISSHDSSTNGLINR Unmodified 1986.9243 0.92427546 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 1 1 1 1 1 15.406 16.176 2;3 3.4787E-55 5543 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 284.68 273.78 603070000 52529000 57152000 62616000 0 0 0 78851000 83904000 72416000 0 0 0 34250000 28790000 27150000 0 0 0 38128000 35846000 31440000 0 0 0 2924 277 2833 56387;56388;56389;56390;56391;56392;56393;56394;56395;56396;56397;56398;56399;56400;56401;56402;56403 34638;34639;34640;34641;34642;34643;34644;34645;34646;34647;34648;34649 34643 12 DDKWSVPLTVR Unmodified 1314.6932 0.6932003 1411 P33219 yebF Protein YebF yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.89 33.327 3 0.00011019 16208 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 100.69 79.909 818660000 119500000 104040000 83072000 1133600 0 0 79482000 73169000 71205000 1280400 0 0 27328000 26343000 23963000 0 0 0 66067000 71297000 70781000 0 0 0 2925 1411 2834 56404;56405;56406;56407;56408;56409;56410;56411;56412;56413;56414;56415;56416;56417 34650;34651;34652;34653 34651 4 DDLAPSLGR Unmodified 942.47706 0.47705951 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.706 23.717 2 0.00011383 10061 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 134.08 119.42 649650000 42182000 37514000 38569000 0 0 0 60849000 64226000 53409000 0 0 0 57114000 51188000 54277000 0 0 0 66297000 61585000 62444000 0 0 0 2926 1500 2835 56418;56419;56420;56421;56422;56423;56424;56425;56426;56427;56428;56429 34654;34655;34656;34657;34658;34659;34660;34661;34662;34663 34662 10 DDLLAAK Unmodified 744.40177 0.4017693 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.036 19.588 2 0.011149 7048 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 86.086 52.233 349090000 41803000 33061000 30062000 0 0 0 33505000 34477000 31624000 0 0 0 27720000 22124000 22498000 0 0 0 36354000 0 35860000 0 0 0 2927 1503 2836 56430;56431;56432;56433;56434;56435;56436;56437;56438;56439;56440 34664;34665;34666;34667;34668 34668 5 DDLLAQFPQAR Unmodified 1272.6463 0.64625011 1766 P75736 ybfF Esterase YbfF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.014 39.425 2 0.00038074 19631 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.819 31.034 76441000 0 12405000 11287000 431710 956010 0 9903400 7065200 8905400 0 0 0 0 0 0 0 0 718290 7210300 11511000 6048100 0 0 0 2928 1766 2837 56441;56442;56443;56444;56445;56446;56447;56448;56449;56450;56451 34669;34670;34671;34672;34673 34669 5 DDLLEVAMELENIALNDPYFIEK Unmodified 2693.3146 0.31460037 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 55.919 54.488 3 0.0038254 27172 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.234 50.053 74001000 29509000 0 28006000 0 0 0 0 0 172430 0 0 0 8305400 0 8007800 0 0 0 0 0 0 0 0 0 2929 657 2838 56452;56453;56454;56455;56456 34674;34675 34674 2 DDLLLEEGAVELPEGEFNAAFNPEAVVK Unmodified 3014.4761 0.47606304 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.417 53.943 3 8.9281E-08 25644 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 103.36 100.42 327030000 26454000 23538000 26245000 0 0 0 25774000 25505000 21445000 0 0 0 37156000 29189000 27893000 0 0 0 26941000 32174000 24716000 0 0 0 2930 1364 2839 56457;56458;56459;56460;56461;56462;56463;56464;56465;56466;56467;56468 34676 34676 1 DDLNLVLATAAK Unmodified 1242.682 0.68196691 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 1 2 1 2 1 2 1 1 43.534 42 2;3 1.4234E-06 20571 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 148.56 132.9 5784900000 1870900000 1809700000 1596900000 5742200 4581500 6367300 11172000 10552000 9410800 0 0 0 34648000 30396000 28986000 0 0 0 121180000 120310000 122050000 1078700 0 813720 2931 318 2840 56469;56470;56471;56472;56473;56474;56475;56476;56477;56478;56479;56480;56481;56482;56483;56484;56485;56486;56487;56488;56489;56490;56491 34677;34678;34679;34680;34681;34682;34683;34684;34685;34686;34687;34688;34689;34690;34691;34692;34693;34694;34695;34696 34684 18 DDLPEGVYNEQFK Unmodified 1552.7046 0.70455285 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.745 34.188 2 6.4046E-09 16591 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 167.67 162.03 2267000000 167640000 173210000 136870000 0 0 0 207210000 203940000 199390000 0 0 0 184010000 176910000 173480000 0 0 0 223480000 208870000 212010000 0 0 0 2932 448 2841 56492;56493;56494;56495;56496;56497;56498;56499;56500;56501;56502;56503 34697;34698;34699;34700;34701;34702;34703;34704;34705;34706;34707;34708 34698 12 DDLPEIWR Unmodified 1042.5084 0.50835964 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.675 40.985 2 0.00083171 20021 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.29 115.81 240530000 10783000 10066000 9966000 0 0 0 21245000 18727000 19940000 0 0 0 26196000 23017000 19818000 0 0 0 26523000 28860000 25391000 0 0 0 2933 180 2842 56504;56505;56506;56507;56508;56509;56510;56511;56512;56513;56514;56515 34709;34710;34711;34712;34713;34714;34715;34716;34717 34713 9 DDLQAVMAMVR Unmodified 1247.6002 0.60022789 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.34 50.092 2 2.5723E-10 24309 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 189.7 175.04 330050000 44730000 40468000 43214000 0 0 0 30210000 26912000 26128000 0 0 0 17364000 18802000 17779000 0 0 0 22715000 21712000 20021000 0 0 0 2934 423 2843 56516;56517;56518;56519;56520;56521;56522;56523;56524;56525;56526;56527 34718;34719;34720;34721;34722;34723;34724;34725;34726;34727;34728;34729 34726 12 DDLSGMDVAR Unmodified 1077.4761 0.47607323 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.629 24.537 2 2.1092E-06 11098 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.68 146.46 594160000 107930000 124650000 0 0 0 0 23070000 25604000 20102000 0 0 0 36961000 30583000 31974000 0 0 0 62130000 62767000 68399000 0 0 0 2935 34 2844 56528;56529;56530;56531;56532;56533;56534;56535;56536;56537;56538;56539 34730;34731;34732;34733;34734;34735;34736;34737;34738;34739 34732 10 DDLSMIAVQGPNAQAK Unmodified 1656.8141 0.81412007 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 2 1 1 1 36.576 34.931 2;3 2.3888E-13 17127 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 192.55 175.92 1722600000 0 0 0 0 0 0 243780000 236180000 232540000 0 0 0 172940000 160410000 172600000 0 798040 0 188730000 160820000 152940000 874010 0 0 2936 1294 2845 56540;56541;56542;56543;56544;56545;56546;56547;56548;56549;56550;56551;56552;56553;56554 34740;34741;34742;34743;34744;34745;34746;34747;34748 34740 4 DDMNTSDMHPFIHPLSAAVDPAWEAK Unmodified 2894.3004 0.30036406 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.202 43.672 4 0.10486 20554 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 27.389 27.06 91904000 0 0 5597400 0 0 0 9627700 10555000 0 0 0 0 7264300 7990500 8977000 0 0 0 10618000 9693600 9619700 4593800 4045800 3320500 2937 205 2846 56555;56556;56557;56558;56559;56560;56561;56562;56563;56564;56565;56566 34749 34749 1 DDNLVVLHDHYLDR Unmodified 1722.8325 0.83254733 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 30.629 29.268 2;3;4 5.2663E-27 13986 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 267.93 256.39 2111100000 117510000 110560000 111950000 0 0 0 256890000 294850000 269470000 0 0 0 237510000 225600000 234420000 0 0 0 168380000 37944000 46024000 0 0 0 2938 213 2847 56567;56568;56569;56570;56571;56572;56573;56574;56575;56576;56577;56578;56579;56580;56581;56582;56583;56584;56585;56586;56587;56588;56589;56590;56591;56592;56593;56594;56595;56596;56597;56598;56599;56600;56601;56602 34750;34751;34752;34753;34754;34755;34756;34757;34758;34759;34760;34761;34762;34763;34764;34765;34766;34767;34768;34769;34770;34771;34772;34773;34774;34775;34776;34777;34778;34779;34780;34781;34782;34783;34784;34785 34755 36 DDSFFDVYTECR Unmodified 1552.614 0.61402328 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 47.863 46.369 2;3 1.1828E-30 22912 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 255.07 255.07 14093000000 2366200000 1989300000 1837400000 6267500 7804000 7224800 1236000000 1373900000 1229300000 2347200 2530200 2046700 708430000 615470000 633390000 0 0 0 724950000 667980000 680350000 2180300 0 0 2939 397 2848 56603;56604;56605;56606;56607;56608;56609;56610;56611;56612;56613;56614;56615;56616;56617;56618;56619;56620;56621;56622;56623;56624;56625;56626;56627;56628;56629;56630;56631;56632;56633 34786;34787;34788;34789;34790;34791;34792;34793;34794;34795;34796;34797;34798;34799;34800;34801;34802;34803;34804;34805;34806;34807;34808;34809;34810;34811;34812;34813;34814;34815;34816;34817;34818 34786 33 DDSGVHHLNVLDFQR Unmodified 1750.8387 0.83869534 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 3 2 1 2 2 2 2 2 2 1 1 1 30.994 29.537 2;3 6.2115E-27 14067 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 280.57 275.29 1602200000 121350000 108160000 90903000 3274500 3220500 3114700 158430000 148900000 157060000 0 0 926280 121580000 124450000 107000000 0 0 0 137150000 150220000 143310000 8062200 7088400 8036700 2940 679 2849 56634;56635;56636;56637;56638;56639;56640;56641;56642;56643;56644;56645;56646;56647;56648;56649;56650;56651;56652;56653;56654;56655;56656;56657;56658;56659;56660;56661;56662;56663;56664;56665 34819;34820;34821;34822;34823;34824;34825;34826;34827;34828;34829;34830;34831;34832;34833;34834;34835;34836;34837 34823 19 DDSHGYELIK Unmodified 1175.5459 0.54586736 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 1 2 2 2 21.055 21.106 2;3 4.0142E-05 8619 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 140.45 102.89 409990000 39936000 30329000 19405000 10814000 7851700 9816300 20828000 26091000 25339000 24662000 27335000 28384000 4607400 0 3477300 8643600 6390800 7408100 32977000 14550000 11457000 15361000 18348000 15974000 2941 1691 2850 56666;56667;56668;56669;56670;56671;56672;56673;56674;56675;56676;56677;56678;56679;56680;56681;56682;56683;56684;56685;56686;56687;56688;56689;56690;56691;56692;56693;56694;56695;56696;56697;56698;56699;56700;56701;56702;56703;56704;56705;56706 34838;34839;34840;34841;34842;34843;34844;34845;34846;34847;34848;34849;34850 34845 13 DDTAVPLLAPNQDIYLR Unmodified 1912.9894 0.9894419 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 52.216 50.895 2 9.3679E-07 25102 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.34 111.44 135620000 0 0 6183000 0 0 0 21237000 21145000 21682000 0 2303400 3029400 11520000 11737000 0 0 0 0 0 18529000 18257000 0 0 0 2942 201 2851 56707;56708;56709;56710;56711;56712;56713;56714;56715;56716 34851;34852;34853;34854;34855 34852 5 DDTEYYLLTSEHVSVSEFEGQEILK Unmodified 2930.3709 0.37092927 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 52.641 51.382 3 9.3459E-07 25333 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.352 97.261 154310000 18455000 24083000 15179000 1991700 0 0 5401900 6332600 3925300 0 0 0 15727000 8955600 9981000 0 0 0 15904000 12883000 15495000 0 0 0 2943 696 2852 56717;56718;56719;56720;56721;56722;56723;56724;56725;56726;56727;56728;56729 34856;34857;34858 34856 2 DDTILVSIMHVNNEIGVVQDIAAIGEMCR Unmodified 3211.5676 0.56755414 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 55.777 54.309 3 9.5424E-42 27124 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 218.86 211.09 577940000 93231000 71637000 84805000 0 0 0 42690000 0 36989000 0 0 0 0 40702000 27829000 0 0 0 56558000 62077000 61419000 0 0 0 2944 228 2853 56730;56731;56732;56733;56734;56735;56736;56737;56738;56739 34859;34860;34861;34862;34863;34864;34865;34866 34862 5 DDTPQALDAVWEEEQVK Unmodified 1971.9062 0.90616578 907 P0AF26 narJ Nitrate reductase molybdenum cofactor assembly chaperone NarJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.596 46.181 2 1.8483E-24 22490 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 264.61 251.63 128400000 7675100 7578400 6726100 0 0 0 7733600 7364800 7814800 0 0 0 10620000 9326000 8349000 0 0 0 19499000 17833000 17881000 0 0 0 2945 907 2854 56740;56741;56742;56743;56744;56745;56746;56747;56748;56749;56750;56751 34867;34868;34869;34870;34871;34872 34868 6 DDTWVTLR Unmodified 1004.4927 0.49270958 809 P0ADU5 ygiW Protein YgiW yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 36.073 34.483 2 0.00011523 16736 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.12 142.48 2699900000 314500000 324590000 263340000 0 0 0 544480000 528550000 523380000 0 0 0 0 101780000 99329000 0 0 0 0 0 0 0 0 0 2946 809 2855 56752;56753;56754;56755;56756;56757;56758;56759 34873;34874;34875;34876;34877 34875 5 DDVAELHK Unmodified 925.45051 0.45051041 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.96 12.793 2 0.0024747 3533 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 100.19 98.322 737940000 36685000 34365000 35980000 0 0 0 195960000 147830000 205340000 0 0 0 9309100 8803200 9579500 0 0 0 18081000 19436000 16567000 0 0 0 2947 1265 2856 56760;56761;56762;56763;56764;56765;56766;56767;56768;56769;56770;56771 34878;34879;34880 34879 3 DDVAELHKR Unmodified 1081.5516 0.55162144 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.82 11.613 3 0.026603 2801 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 45.161 35.506 114220000 7391800 6478900 7328800 0 0 0 26051000 31684000 27255000 0 0 0 0 1651300 1850400 0 0 0 2066000 0 2467100 0 0 0 2948 1265 2857 56772;56773;56774;56775;56776;56777;56778;56779;56780;56781 34881;34882;34883 34883 3 DDVAFQIINDELYLDGNAR Unmodified 2180.0386 0.038576936 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 55.098 53.61 2;3 8.945E-37 26601 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 302.28 295.08 6539500000 815750000 727270000 320210000 0 0 0 1538900000 1318000000 1340900000 9740900 0 7132400 73962000 75781000 69129000 0 0 0 82233000 84249000 76325000 0 0 0 2949 1755;1756 2858 56782;56783;56784;56785;56786;56787;56788;56789;56790;56791;56792;56793;56794;56795;56796;56797;56798;56799;56800;56801;56802;56803;56804;56805;56806;56807;56808 34884;34885;34886;34887;34888;34889;34890;34891;34892;34893;34894;34895;34896;34897 34886 11 DDVIIGVNR Unmodified 999.53491 0.53490874 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 27.775 26.329 2 0.00033521 12201 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.78 97.841 124790000 0 2349100 0 0 0 0 29054000 28076000 29084000 890050 0 0 0 0 0 0 0 0 18627000 15267000 1440800 0 0 0 2950 1507 2859 56809;56810;56811;56812;56813;56814;56815;56816 34898;34899;34900 34900 3 DDVIVSPQTVQVK Unmodified 1426.7668 0.76675917 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.172 30.438 2 0.0012213 14600 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 69.01 69.01 220850000 0 0 28111000 0 0 0 44388000 44338000 44020000 3661000 3944800 0 0 0 24270000 0 0 0 0 0 28115000 0 0 0 2951 804 2860 56817;56818;56819;56820;56821;56822;56823;56824 34901;34902;34903;34904;34905;34906;34907 34904 1 DDVKLIEVPVEYIAGK Unmodified 1786.9717 0.97166657 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 48.408 47.908 3 0.00013626 17593 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 47.478 43.376 143940000 0 0 2754600 0 0 0 0 0 0 0 0 0 0 0 0 58293000 38857000 33057000 0 0 0 0 0 10981000 2952 463 2861 56825;56826;56827;56828;56829 34908;34909 34909 2 DDVMGESLYNPMLPGIVADLK Unmodified 2276.1069 0.1068562 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 2 2 2 55.581 54.126 2;3 6.8675E-16 26673 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 203.27 190.71 837390000 48086000 33001000 50493000 0 0 0 42903000 39056000 38325000 0 0 0 104550000 100830000 96312000 0 0 0 96554000 95823000 91461000 0 0 0 2953 1073 2862 56830;56831;56832;56833;56834;56835;56836;56837;56838;56839;56840;56841;56842;56843;56844;56845;56846;56847;56848;56849 34910;34911;34912;34913;34914;34915;34916 34913 7 DDVNFLK Unmodified 849.42323 0.42323303 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.787 27.402 2 0.0051746 12961 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.74 64.186 841870000 11961000 11739000 10360000 0 0 0 132610000 150690000 133350000 10342000 11320000 10158000 74474000 69541000 88574000 0 1802200 0 39495000 39674000 39129000 2180200 1997700 2475700 2954 25 2863 56850;56851;56852;56853;56854;56855;56856;56857;56858;56859;56860;56861;56862;56863;56864;56865;56866;56867;56868;56869 34917;34918;34919;34920;34921;34922;34923;34924;34925;34926;34927;34928 34921 12 DDVSQIIER Unmodified 1073.5353 0.53530267 1703 P65294 ygdR Uncharacterized lipoprotein YgdR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.275 27.491 2 0.14396 13074 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 42.287 26.746 40692000 0 0 0 799020 863410 1102800 9288100 9391000 8304500 2722500 2570500 1920100 0 0 0 0 0 0 0 0 0 1295200 1139000 1296000 2955 1703 2864 56870;56871;56872;56873;56874;56875;56876;56877;56878;56879;56880;56881 34929 34929 0 DDVTGEELTTR Unmodified 1234.5677 0.56772501 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.402 20.811 2 1.206E-08 8271 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 179.51 174.9 7265400000 622650000 612370000 548720000 585230 577670 832040 576040000 576610000 588030000 0 0 0 658720000 535400000 624460000 0 0 0 634350000 635780000 650310000 0 0 0 2956 1733 2865 56882;56883;56884;56885;56886;56887;56888;56889;56890;56891;56892;56893;56894;56895;56896 34930;34931;34932;34933;34934;34935;34936;34937;34938;34939;34940;34941 34931 12 DDVTPMAMGGNK Unmodified 1234.5322 0.5322079 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.907 22.359 2 0.00091985 9438 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 78.516 74.594 141560000 23917000 25388000 20429000 0 0 0 8385100 10912000 11922000 0 0 0 6518600 4484800 4593700 0 0 0 8637300 8671100 7698300 0 0 0 2957 1850 2866 56897;56898;56899;56900;56901;56902;56903;56904;56905;56906;56907;56908 34942 34942 1 DDWQTQEGK Unmodified 1105.4676 0.46761704 1366 P31433 yicH Uncharacterized protein YicH yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 13.765 14.551 2 0.014438 4684 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 67.464 65.976 6425200 0 0 0 0 0 0 2136300 0 2275900 0 0 0 0 0 0 0 0 0 2013000 0 0 0 0 0 2958 1366 2867 56909;56910;56911 34943;34944 34943 1 DDYNPETEQYTLTISQR Unmodified 2071.9334 0.93344316 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 38.245 36.571 2;3 1.2731E-24 17993 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 272.54 269.42 776860000 81148000 63941000 62866000 1343300 0 0 82962000 88184000 77775000 0 0 0 50701000 53849000 45160000 0 0 0 57821000 54898000 56207000 0 0 0 2959 94 2868 56912;56913;56914;56915;56916;56917;56918;56919;56920;56921;56922;56923;56924;56925;56926;56927;56928;56929;56930;56931;56932;56933;56934;56935;56936 34945;34946;34947;34948;34949;34950;34951;34952;34953;34954;34955;34956;34957;34958;34959;34960 34945 16 DEADEKDAIATVNK Unmodified 1517.7209 0.72093119 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.205 17.021 2;3 5.4082E-08 5720 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 149.23 137.18 200300000 24154000 27030000 21509000 0 0 0 12771000 13720000 13151000 0 0 0 11590000 12829000 11457000 0 0 0 19216000 19150000 13721000 0 0 0 2960 990 2869 56937;56938;56939;56940;56941;56942;56943;56944;56945;56946;56947;56948;56949;56950;56951;56952;56953;56954;56955;56956;56957;56958;56959;56960 34961;34962;34963;34964;34965;34966;34967 34965 7 DEAGGNWK Unmodified 875.37735 0.37734547 1720 P68206 yjbJ UPF0337 protein YjbJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.658 13.432 2 0.0031954 3921 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.163 89.946 1611600000 346870000 385830000 341130000 0 0 0 159090000 152640000 150440000 0 0 0 0 0 0 0 0 0 24392000 23641000 27597000 0 0 0 2961 1720 2870 56961;56962;56963;56964;56965;56966;56967;56968;56969 34968;34969;34970;34971;34972;34973 34973 6 DEALDAIAK Unmodified 944.48148 0.48147619 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 25.103 24.156 2 0.0062757 10872 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 71.501 50.981 272170000 23900000 20553000 18535000 0 0 0 32186000 0 33576000 0 0 0 21125000 22582000 21352000 0 0 0 26561000 26567000 25229000 0 0 0 2962 244 2871 56970;56971;56972;56973;56974;56975;56976;56977;56978;56979;56980 34974;34975;34976;34977;34978;34979 34975 4 DEALHLTGTQHMLNLLR Unmodified 1961.0153 0.015279494 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 2 1 2 2 3 2 2 2 3 3 3 1 3 3 3 1 1 39.473 37.724 2;3;4 1.3998E-31 18361 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 258.65 252.62 2022600000 151020000 178820000 166230000 2441700 3388400 1692800 86287000 80717000 155960000 5133900 2790500 3405000 152940000 151140000 132910000 0 0 1874800 246790000 233640000 262250000 1378000 1799100 0 2963 1759 2872 56981;56982;56983;56984;56985;56986;56987;56988;56989;56990;56991;56992;56993;56994;56995;56996;56997;56998;56999;57000;57001;57002;57003;57004;57005;57006;57007;57008;57009;57010;57011;57012;57013;57014;57015;57016;57017;57018;57019;57020;57021;57022;57023;57024;57025;57026;57027;57028 34980;34981;34982;34983;34984;34985;34986;34987;34988;34989;34990;34991;34992;34993;34994;34995;34996;34997;34998;34999;35000 34982 21 DEAPQAPWEGTTIPAYDGWSDDGK Unmodified 2605.1245 0.12449141 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 51.663 50.401 2;3 5.0379E-15 24538 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 182.23 181.97 399250000 0 0 0 0 0 0 33992000 36005000 35905000 0 0 0 65759000 58593000 49284000 0 0 0 17779000 49736000 52198000 0 0 0 2964 723 2873 57029;57030;57031;57032;57033;57034;57035;57036;57037;57038;57039;57040;57041;57042;57043;57044;57045 35001;35002;35003;35004;35005;35006;35007;35008;35009;35010;35011;35012 35006 12 DECGCGESFHV Unmodified 1295.4547 0.45468587 588 P0AAC8 iscA Iron-binding protein IscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.825 24.753 2 9.0752E-05 11397 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.62 121.62 573070000 58787000 51490000 47285000 0 0 0 35599000 39439000 36983000 0 0 0 42216000 39362000 38073000 0 0 0 63279000 63856000 56699000 0 0 0 2965 588 2874 57046;57047;57048;57049;57050;57051;57052;57053;57054;57055;57056;57057 35013;35014;35015;35016;35017;35018;35019;35020;35021;35022;35023;35024 35013 12 DEDELPVK Unmodified 943.44984 0.44984171 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.874 20.949 2 0.0039159 8286 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.123 84.441 395740000 85875000 62556000 64080000 0 0 0 26254000 0 17353000 8603800 6806000 4968700 0 24835000 0 0 0 0 36623000 0 47681000 3562800 3302000 3237300 2966 34 2875 57058;57059;57060;57061;57062;57063;57064;57065;57066;57067;57068;57069;57070;57071 35025;35026;35027;35028;35029;35030 35029 5 DEDGLAIDFEIEGEYPQFGNNDPR Unmodified 2739.1936 0.19363361 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 2 2 2 1 1 2 54.837 53.399 2;3 4.0709E-72 25422 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 290.32 283.09 200570000 0 5944500 8275600 0 0 0 20520000 16800000 19509000 0 0 0 34129000 31502000 28173000 0 0 0 10083000 10899000 14732000 0 0 0 2967 212 2876 57072;57073;57074;57075;57076;57077;57078;57079;57080;57081;57082;57083;57084;57085;57086 35031;35032 35031 1 DEDGNYLVDVILDEAANK Unmodified 1991.9324 0.93238053 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 55.656 54.18 2;3 5.5099E-10 25682 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 170.95 169.96 901240000 54099000 18338000 46908000 0 0 0 68103000 54364000 62914000 0 0 0 108280000 90114000 107730000 0 0 0 100190000 96833000 93356000 0 0 0 2968 24 2877 57087;57088;57089;57090;57091;57092;57093;57094;57095;57096;57097;57098;57099;57100;57101;57102;57103;57104;57105;57106;57107;57108;57109 35033;35034;35035;35036;35037;35038;35039;35040;35041;35042;35043 35042 11 DEDKLHAPDNAWVQQTR Unmodified 2021.9555 0.95551601 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 3 2 3 2 2 2 2 2 3 3 3 2 2 2 2 23.56 22.707 2;3;4 3.1532E-19 9765 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 192.32 190.59 1020300000 129350000 106510000 108230000 0 0 0 70874000 69303000 73910000 18882000 14469000 14072000 45041000 42299000 43731000 0 0 0 74242000 103280000 87795000 7642900 5346600 5337000 2969 1408 2878 57110;57111;57112;57113;57114;57115;57116;57117;57118;57119;57120;57121;57122;57123;57124;57125;57126;57127;57128;57129;57130;57131;57132;57133;57134;57135;57136;57137;57138;57139;57140;57141;57142;57143;57144;57145;57146;57147;57148;57149;57150;57151;57152;57153 35044;35045;35046;35047;35048;35049;35050;35051;35052;35053;35054;35055;35056;35057;35058;35059;35060;35061;35062;35063;35064;35065 35054 22 DEEFTLQEFLTTCR Unmodified 1787.8036 0.80361496 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 54.65 53.161 2 0.00032006 26102 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 100.55 92.041 91288000 22211000 18203000 20494000 0 0 0 10312000 7665200 9748800 0 0 0 0 0 0 0 0 0 0 0 2653700 0 0 0 2970 757 2879 57154;57155;57156;57157;57158;57159;57160 35066;35067 35067 0 DEEGLEIIR Unmodified 1072.5401 0.5400537 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.107 32.498 2 1.5629E-05 14797 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 159.04 151.47 2792800000 189790000 204230000 181670000 1039900 0 1101200 277040000 254280000 243730000 2362000 3363700 0 226110000 191040000 210110000 0 0 0 280380000 277200000 249340000 0 0 0 2971 445 2880 57161;57162;57163;57164;57165;57166;57167;57168;57169;57170;57171;57172;57173;57174;57175;57176 35068;35069;35070;35071;35072;35073;35074;35075;35076;35077;35078;35079 35079 12 DEEHKNTMCK Unmodified 1290.5333 0.53327054 616 P0AAV6 ybgS Uncharacterized protein YbgS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 4.6797 5.5334 2 0.00036077 1004 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 120.45 111.54 29892000 0 0 0 0 0 0 10223000 7483100 9431500 0 0 0 0 0 0 0 0 0 0 0 2754100 0 0 0 2972 616 2881 57177;57178;57179;57180 35080;35081;35082 35081 3 DEEHNNQVLNK Unmodified 1338.6164 0.61640654 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 11.146 11.873 2 4.4382E-14 2996 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 203.97 161.37 175800000 48927000 51339000 47274000 0 0 0 9102900 9609400 9551100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2973 195 2882 57181;57182;57183;57184;57185;57186 35083;35084;35085;35086 35085 4 DEENMPGSR Unmodified 1033.4135 0.41347298 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.079 12.9 2 4.0379E-05 3645 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 151.5 151.5 138210000 23917000 28553000 29235000 0 0 0 8384100 11456000 8643300 0 0 0 0 5294600 5785800 0 0 0 5948600 5401500 5589000 0 0 0 2974 219 2883 57187;57188;57189;57190;57191;57192;57193;57194;57195;57196;57197 35087;35088;35089;35090 35088 4 DEEVPALFTNK Unmodified 1261.619 0.6190323 1460 P37182 hybD Hydrogenase 2 maturation protease yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.596 36.761 2 0.00045344 17751 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 102.06 101.08 126080000 0 1983900 0 0 0 0 13741000 14252000 11228000 0 544030 379060 10466000 12276000 12312000 0 0 0 17097000 15165000 16631000 0 0 0 2975 1460 2884 57198;57199;57200;57201;57202;57203;57204;57205;57206;57207;57208;57209 35091;35092;35093;35094 35094 4 DEFADGASYLQGK Unmodified 1399.6256 0.62557424 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.273 32.825 2 7.5923E-06 15571 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.79 116.85 229550000 52645000 49654000 45917000 0 0 0 15008000 16298000 13130000 0 0 0 4747000 5453000 4601900 0 0 0 8041600 7746900 6311100 0 0 0 2976 119 2885 57210;57211;57212;57213;57214;57215;57216;57217;57218;57219;57220;57221 35095;35096;35097;35098;35099 35098 4 DEFAESR Unmodified 852.36136 0.36136105 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.804 13.63 2 0.13181 4071 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.687 57.773 62562000 5993300 0 7483200 0 0 0 10969000 10338000 11238000 0 0 0 0 4806200 2810300 0 0 0 4636500 0 4288600 0 0 0 2977 1284 2886 57222;57223;57224;57225;57226;57227;57228;57229;57230 35100 35100 0 DEFAESRPLEK Unmodified 1319.6357 0.635745 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 16.915 17.666 2;3 6.0318E-14 6031 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 208.63 208.63 1507300000 144060000 142730000 119860000 0 0 0 206480000 207160000 227150000 0 0 0 86776000 82811000 89274000 0 0 0 59385000 44956000 96633000 0 0 0 2978 1284 2887 57231;57232;57233;57234;57235;57236;57237;57238;57239;57240;57241;57242;57243;57244;57245;57246;57247;57248;57249;57250;57251;57252 35101;35102;35103;35104;35105;35106;35107;35108;35109;35110;35111;35112;35113;35114;35115;35116;35117;35118;35119;35120;35121 35116 20 DEFMQELGLEEPGLNR Unmodified 1875.8673 0.86727785 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 52.336 51.021 2 0.042164 24005 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 47.712 45.062 13074000 0 0 0 0 0 0 5258800 4431600 0 0 0 0 1631600 1751800 0 0 0 0 0 0 0 0 0 0 2979 680 2888 57253;57254;57255;57256 35122 35122 0 DEFVVVR Unmodified 862.45487 0.45486751 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.343 26.901 2 0.0023076 12383 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.6 97.891 339510000 9330400 10435000 9141900 0 0 0 28805000 28294000 29842000 3030400 1288500 2640000 28163000 26712000 23471000 0 0 0 42511000 43631000 36171000 6394000 5550000 4099700 2980 205 2889 57257;57258;57259;57260;57261;57262;57263;57264;57265;57266;57267;57268;57269;57270;57271;57272;57273;57274 35123;35124;35125;35126 35125 4 DEGLRPHHIQSYGNPVEQTWQK Unmodified 2618.2626 0.26259707 80 P03018 uvrD DNA helicase II yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.714 22.272 4 0.003644 6637 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 51.834 49.072 103890000 5787700 10275000 6893400 0 0 0 6785800 0 6815300 0 0 0 3814600 3624800 4024700 8076900 8916400 12478000 6586600 7650800 9658200 2502600 0 0 2981 80 2890 57275;57276;57277;57278;57279;57280;57281;57282;57283;57284;57285;57286;57287;57288;57289 35127 35127 1 DEGYISDSGDAEPAETMK Unmodified 1913.7837 0.78366738 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.917 26.482 2 5.6202E-17 12365 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.18 160.18 78165000 5150300 4484700 0 0 0 0 9690200 9625300 8549300 1971600 1279700 1787100 8345400 0 0 0 0 0 8953500 9531500 8796300 0 0 0 2982 324 2891 57290;57291;57292;57293;57294;57295;57296;57297;57298;57299;57300;57301 35128;35129;35130;35131 35128 4 DEHLMSLK Unmodified 971.47462 0.47461667 789 P0ADI4 entB Enterobactin synthase component B;Isochorismatase;Aryl carrier protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 18.698 19.256 2 0.0015802 7329 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.66 96.296 227300000 9745400 12428000 0 0 0 0 13688000 10550000 13060000 0 0 0 19588000 20812000 18632000 0 0 0 37264000 39662000 31868000 0 0 0 2983 789 2892 57302;57303;57304;57305;57306;57307;57308;57309;57310;57311;57312 35132;35133;35134 35132 3 DEKGELLVPER Unmodified 1283.6721 0.67213051 27 P00393 ndh NADH dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 22.201 21.967 2;3 2.6923E-05 9279 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.91 142.94 395270000 15023000 11984000 12534000 1536600 1708700 0 57356000 59323000 44691000 12787000 13022000 14069000 21293000 21093000 9131300 1153500 1241300 0 13705000 36431000 33717000 4601600 4599700 4266400 2984 27 2893 57313;57314;57315;57316;57317;57318;57319;57320;57321;57322;57323;57324;57325;57326;57327;57328;57329;57330;57331;57332;57333;57334;57335;57336;57337;57338;57339;57340;57341;57342;57343;57344;57345;57346;57347;57348;57349;57350;57351;57352 35135;35136;35137;35138;35139;35140;35141;35142;35143;35144;35145;35146;35147;35148;35149;35150;35151;35152;35153;35154 35143 20 DEKHQINQFLADWLR Unmodified 1911.9591 0.95914482 810 P0ADU7 yqiB Uncharacterized protein YqiB yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 47.234 46.739 3 0.0062393 17766 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 53.828 44.267 9448300 0 0 0 0 0 0 0 0 0 0 0 1221000 0 0 0 3280100 0 4947100 0 0 0 0 0 0 2985 810 2894 57353;57354;57355 35155 35155 1 DELELVK Unmodified 844.4542 0.45419881 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.23 26.082 2 0.0033765 11884 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 108.24 73.133 256470000 19688000 19973000 21895000 0 0 0 15927000 17082000 17270000 0 0 0 21671000 19385000 19691000 0 0 0 27090000 26475000 30322000 0 0 0 2986 346 2895 57356;57357;57358;57359;57360;57361;57362;57363;57364;57365;57366;57367 35156;35157;35158;35159;35160;35161;35162;35163;35164;35165;35166 35160 11 DELESFASAVTGR Unmodified 1380.6521 0.65212334 260 P0A6L7 uxaB Altronate oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 47.311 45.853 2 0.0013189 21414 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 67.385 63.622 41213000 0 0 2875900 0 0 0 8319900 7320300 6942300 0 0 0 0 4444600 5832600 0 0 0 2934700 0 2542800 0 0 0 2987 260 2896 57368;57369;57370;57371;57372;57373;57374;57375 35167;35168 35168 0 DELFEHYK Unmodified 1079.4924 0.49237523 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.941 21.988 2 0.0034319 9120 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 92.187 73.648 122440000 12597000 8779200 10121000 0 0 0 13094000 11434000 11790000 0 0 0 8808700 5974600 7314600 0 0 0 11084000 10401000 11045000 0 0 0 2988 37 2897 57376;57377;57378;57379;57380;57381;57382;57383;57384;57385;57386;57387 35169;35170;35171;35172;35173 35169 5 DELGDNLYIAQLDVR Unmodified 1732.8632 0.86317875 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 51.415 50.076 2 3.7634E-27 24582 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 238.01 229.49 157110000 22594000 0 0 0 0 0 38787000 39643000 36045000 0 0 0 0 0 20043000 0 0 0 0 0 0 0 0 0 2989 1545 2898 57388;57389;57390;57391;57392 35174;35175;35176 35176 3 DELHAQLSNNR Unmodified 1295.6218 0.62182627 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 2 2 2 2 2 2 1 1 1 1 2 2 2 1 14.137 14.719 2;3 5.6693E-06 4706 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 151.83 148.71 237810000 21965000 20327000 18700000 0 0 0 17502000 9439600 19540000 3372700 2848500 2937900 16857000 16833000 15272000 836100 673430 940270 14389000 25652000 26410000 2516100 801810 0 2990 1197 2899 57393;57394;57395;57396;57397;57398;57399;57400;57401;57402;57403;57404;57405;57406;57407;57408;57409;57410;57411;57412;57413;57414;57415;57416;57417;57418;57419;57420;57421;57422;57423;57424;57425;57426 35177;35178;35179;35180;35181;35182;35183;35184;35185;35186;35187;35188 35181 12 DELIISTK Unmodified 917.50696 0.50696266 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.839 24.766 2 0.0023436 10987 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.28 101.28 125880000 24814000 26226000 24529000 0 0 0 9756100 7794000 6586300 0 0 0 5880500 4753200 3584300 0 0 0 2988000 4462300 4511000 0 0 0 2991 1958 2900 57427;57428;57429;57430;57431;57432;57433;57434;57435;57436;57437;57438 35189;35190 35190 2 DELLALIR Unmodified 941.55458 0.55458155 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 47.424 46.007 2 0.00065547 22714 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.75 87.253 50353000 6862200 6119300 5490500 0 0 0 4523700 5987900 6822600 0 0 0 0 0 2544300 0 0 0 3412200 4769000 3821200 0 0 0 2992 839 2901 57439;57440;57441;57442;57443;57444;57445;57446;57447;57448;57449 35191;35192;35193;35194;35195;35196 35191 6 DELPALVQSQFNVSDR Unmodified 1816.8955 0.89554151 1405 P33018 yeiG S-formylglutathione hydrolase YeiG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 47.808 46.383 2 1.1513E-23 22561 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 204.49 198.05 108090000 24791000 23704000 22702000 0 0 0 4254000 5690100 6040400 0 0 0 3258200 3557900 2920100 0 0 0 5056200 0 6120500 0 0 0 2993 1405 2902 57450;57451;57452;57453;57454;57455;57456;57457;57458;57459;57460 35197;35198;35199 35199 3 DELRGLK Unmodified 829.46577 0.46576654 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 13.295 13.568 2 0.00066589 3215 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 155.53 95.19 326300000 0 0 8394500 0 0 0 0 0 0 4119500 5635100 4650400 0 2866200 0 80444000 70316000 77973000 0 0 0 22260000 27025000 22620000 2994 458 2903 57461;57462;57463;57464;57465;57466;57467;57468;57469;57470;57471 35200;35201;35202;35203;35204;35205 35201 6 DELRGLKENVIVGR Unmodified 1596.8948 0.89475365 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 3 3 3 3 3 3 24.154 23.338 2;3;4 4.0057E-11 8085 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 166.6 161.75 504490000 0 0 0 435870 0 678320 0 0 0 12276000 11797000 11717000 0 0 0 112120000 107260000 95813000 0 0 0 47188000 52836000 52366000 2995 458 2904 57472;57473;57474;57475;57476;57477;57478;57479;57480;57481;57482;57483;57484;57485;57486;57487;57488;57489;57490;57491;57492;57493;57494;57495;57496;57497 35206;35207;35208;35209;35210;35211;35212;35213;35214;35215;35216;35217;35218;35219;35220;35221 35217 16 DELSDALKR Unmodified 1045.5404 0.54038805 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.155 21.943 2 8.7264E-06 8951 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 147.34 122.41 242860000 0 0 0 0 0 0 0 0 34110000 1081300 1411900 1487800 19886000 17809000 15846000 7141400 6807100 8576600 34590000 37920000 34684000 7900000 7094500 6511200 2996 787 2905 57498;57499;57500;57501;57502;57503;57504;57505;57506;57507;57508;57509;57510;57511;57512;57513;57514;57515;57516 35222;35223;35224;35225;35226;35227;35228;35229;35230 35226 9 DENDEFVK Unmodified 994.42436 0.42435524 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.416 18.023 2 0.00098544 6579 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 114.78 113.7 1781700000 73980000 78922000 66052000 0 0 0 207540000 230440000 242410000 963520 0 0 152660000 154690000 130350000 0 0 0 153760000 152430000 137440000 0 0 0 2997 1487 2906 57517;57518;57519;57520;57521;57522;57523;57524;57525;57526;57527;57528;57529 35231;35232;35233;35234;35235;35236;35237;35238;35239;35240;35241;35242 35234 12 DENDNVEVSR Unmodified 1175.5055 0.50545911 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.571 13.406 2 0.00051539 3957 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 98.033 94.349 535680000 28737000 19925000 22090000 0 0 0 63641000 70370000 59136000 0 0 0 44918000 42650000 43165000 0 0 0 45821000 52704000 42520000 0 0 0 2998 441 2907 57530;57531;57532;57533;57534;57535;57536;57537;57538;57539;57540;57541 35243 35243 1 DENGIWHGEETEAVLKPEIVHER Unmodified 2686.2987 0.2987078 1844 P76256 tsaB tRNA threonylcarbamoyladenosine biosynthesis protein TsaB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 32.448 31.141 5 0.13625 14179 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 25.407 24.354 101580000 10339000 8462600 0 0 0 0 15208000 0 14198000 0 0 0 14709000 12229000 9656300 0 0 0 0 16780000 0 0 0 0 2999 1844 2908 57542;57543;57544;57545;57546;57547;57548;57549 35244 35244 0 DENGNVEVR Unmodified 1030.468 0.46795139 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.075 12.756 2 0.00020056 3598 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.52 118.85 1179900000 58040000 54780000 50364000 0 744390 0 104000000 101050000 100680000 888000 760570 0 99917000 92040000 95276000 0 0 0 140920000 146160000 132660000 538020 556630 562980 3000 337 2909 57550;57551;57552;57553;57554;57555;57556;57557;57558;57559;57560;57561;57562;57563;57564;57565;57566;57567 35245;35246;35247;35248 35247 4 DENGQFQNR Unmodified 1106.4741 0.4740994 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 11.6 12.454 2 1.6325E-05 3371 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 158.08 151.44 63498000 5614900 0 0 0 0 0 7792200 4762200 6320900 0 0 0 6739200 4925300 7293600 0 0 0 8460900 6624600 4964300 0 0 0 3001 1586 2910 57568;57569;57570;57571;57572;57573;57574;57575;57576;57577 35249;35250 35250 2 DENITVVWVPGAYELPLAAGALAK Unmodified 2496.3264 0.3264261 1640 P61714 ribE 6,7-dimethyl-8-ribityllumazine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 1 2 2 1 1 55.773 54.284 2;3 4.8025E-15 25737 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 135.64 135.41 1745500000 150140000 77967000 179200000 0 0 0 237430000 157860000 189450000 0 0 0 88693000 93997000 98673000 0 0 0 240000000 91860000 140230000 0 0 0 3002 1640 2911 57578;57579;57580;57581;57582;57583;57584;57585;57586;57587;57588;57589;57590;57591;57592;57593;57594;57595;57596 35251;35252;35253;35254;35255;35256;35257;35258;35259;35260;35261;35262;35263;35264;35265;35266;35267 35267 17 DENNWQEAAK Unmodified 1203.5156 0.51562986 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.677 17.434 2 5.5476E-09 6213 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 191.85 190.64 717510000 29730000 22737000 21554000 0 0 0 123160000 115520000 108070000 0 0 0 46032000 40302000 44074000 0 0 0 53514000 56246000 56568000 0 0 0 3003 167 2912 57597;57598;57599;57600;57601;57602;57603;57604;57605;57606;57607;57608 35268;35269;35270;35271;35272;35273;35274;35275;35276 35270 8 DENYFTDK Unmodified 1030.4244 0.42435524 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.478 21.683 2 0.0081036 8927 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.241 80.458 76129000 8963200 5355100 7315500 0 0 0 6252900 7242300 4982600 0 0 0 7356800 6588200 7069600 0 0 0 4747100 5349900 4905500 0 0 0 3004 1252 2913 57609;57610;57611;57612;57613;57614;57615;57616;57617;57618;57619;57620 35277;35278 35278 1 DENYFTDKYELTR Unmodified 1692.7631 0.76313036 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.122 30.782 3 0.00020182 13928 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 81.278 81.278 245670000 16308000 22710000 17015000 0 0 0 22619000 21144000 30016000 0 0 0 21052000 20199000 21692000 0 0 0 18329000 19336000 15245000 0 0 0 3005 1252 2914 57621;57622;57623;57624;57625;57626;57627;57628;57629;57630;57631;57632 35279;35280;35281;35282;35283;35284;35285 35285 1 DEPFVSMEGK Unmodified 1137.5012 0.50122535 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS 1 30.445 28.594 2 0.0056692 13686 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 73.573 67.914 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3006 219 2915 57633 35286 35286 1 DEPILLRPGDSVR Unmodified 1465.7889 0.7888916 615 P0AAV4 ybgJ Uncharacterized protein YbgJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 1 1 1 1 1 29.782 28.426 2;3 1.0352E-05 13109 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 108.59 100.49 171000000 35161000 30554000 29262000 0 0 0 13162000 10134000 12862000 0 0 0 7179000 4415200 3904600 0 0 0 7472000 10412000 6480300 0 0 0 3007 615 2916 57634;57635;57636;57637;57638;57639;57640;57641;57642;57643;57644;57645;57646;57647;57648;57649;57650;57651 35287;35288;35289;35290;35291;35292 35292 6 DEQNLELVLR Unmodified 1227.6459 0.64591575 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 39.572 37.73 2 1.324E-06 14699 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 166.16 155.9 297640000 0 84776000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 159540000 0 0 16628000 18249000 18452000 3008 1433 2917 57652;57653;57654;57655;57656 35293;35294;35295 35293 3 DEQSVHQIAAER Unmodified 1381.6586 0.65860571 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 2 1 1 1 2 1 2 1 1 12.802 13.681 2;3 1.0359E-06 4184 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.1 146.48 238830000 36674000 35824000 27884000 3413900 2508700 2258100 29936000 15255000 14715000 0 0 0 7858100 16447000 6268200 0 0 0 23208000 8634500 7944600 0 0 0 3009 1587 2918 57657;57658;57659;57660;57661;57662;57663;57664;57665;57666;57667;57668;57669;57670;57671;57672;57673;57674;57675;57676;57677;57678;57679 35296;35297;35298;35299;35300;35301;35302;35303 35296 4 DESDKDGMR Unmodified 1051.424 0.42403766 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.5503 6.4162 2 2.0094E-07 1579 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 180.45 133.38 231280000 15271000 15089000 15112000 0 0 0 13933000 15268000 13428000 0 0 0 25120000 22210000 24763000 0 0 0 23253000 23150000 24688000 0 0 0 3010 882 2919 57680;57681;57682;57683;57684;57685;57686;57687;57688;57689;57690;57691 35304;35305;35306;35307;35308;35309;35310;35311;35312 35309 9 DESIRLDKPVMLGGPLAEDR Unmodified 2210.1365 0.13651684 467 P0A8W5 yqgE UPF0301 protein YqgE yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 2 1 1 1 1 2 1 1 38.348 36.819 3;4 0.0052648 12826 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 44.816 36.426 48736000 0 0 0 4953600 4631300 4312900 0 0 0 10949000 4286800 4159100 0 0 0 2184100 2234900 4271000 0 0 0 3765800 0 2987600 3011 467 2920 57692;57693;57694;57695;57696;57697;57698;57699;57700;57701;57702;57703;57704;57705;57706;57707 35313;35314;35315;35316;35317;35318 35318 6 DESMNIR Unmodified 863.38072 0.38071629 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.017 15.603 2 0.0010521 3877 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 137.83 121.28 322370000 13044000 16802000 15289000 12010000 11841000 13626000 24406000 27500000 22128000 15026000 13326000 15610000 0 19908000 0 0 0 0 0 37023000 31379000 13064000 11169000 9218100 3012 1383 2921 57708;57709;57710;57711;57712;57713;57714;57715;57716;57717;57718;57719;57720;57721;57722;57723;57724;57725 35319;35320 35319 2 DESVEVPSVGGRPPR Unmodified 1579.7954 0.79543354 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 22.297 22.065 2;3 1.936E-06 8769 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 106.13 103.82 382900000 26119000 24662000 24008000 1399200 1985700 0 35286000 38771000 37788000 3294800 2296700 0 26708000 22331000 25215000 0 0 0 35017000 41272000 34026000 1045100 1669800 0 3013 656 2922 57726;57727;57728;57729;57730;57731;57732;57733;57734;57735;57736;57737;57738;57739;57740;57741;57742;57743;57744;57745;57746;57747;57748;57749;57750;57751;57752;57753;57754;57755 35321;35322;35323;35324;35325;35326;35327;35328;35329;35330;35331;35332;35333;35334;35335 35334 15 DETGKTPVLTSVK Unmodified 1373.7402 0.74021007 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.532 18.214 2 2.0435E-12 6687 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 196.24 185.87 167780000 16329000 13141000 13339000 0 0 0 15099000 16051000 16033000 0 0 0 8522900 11234000 12316000 0 0 0 14319000 15249000 16145000 0 0 0 3014 31 2923 57756;57757;57758;57759;57760;57761;57762;57763;57764;57765;57766;57767 35336;35337;35338;35339;35340;35341;35342;35343;35344;35345;35346;35347 35342 12 DETLFMR Unmodified 910.42185 0.42185282 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 32.023 30.888 2 0.00056307 14619 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.82 147.36 34315000 8169500 8706800 8354500 0 0 0 0 0 0 0 0 0 3699600 2993500 2391100 0 0 0 0 0 0 0 0 0 3015 1295 2924 57768;57769;57770;57771;57772;57773;57774 35348;35349;35350;35351 35349 4 DETYLYQSGK Unmodified 1202.5455 0.54553301 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 21.458 21.634 2 0.0041578 8836 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 68.846 64.307 174120000 26943000 22503000 19791000 0 0 0 0 0 0 0 0 0 0 0 26715000 0 0 0 0 39942000 38222000 0 0 0 3016 346 2925 57775;57776;57777;57778;57779;57780 35352;35353;35354;35355;35356 35352 2 DEVAAGR Unmodified 716.34532 0.34531706 1339 P30136 thiC Phosphomethylpyrimidine synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 9.9448 10.758 2 0.16286 2372 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 42.968 16.859 44795000 0 0 0 0 0 0 399140 4012000 0 0 0 0 0 0 0 0 0 0 14520000 13568000 12296000 0 0 0 3017 1339 2926 57781;57782;57783;57784;57785 35357 35357 1 DEVEEAWK Unmodified 1004.4451 0.44509068 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.61 22.081 2 0.0083814 8958 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 81.784 80.87 76683000 6472400 4812100 6062500 0 0 0 7416700 8429500 8710800 0 0 0 3954300 6762200 6808400 0 0 0 6299300 6410200 4544500 0 0 0 3018 702 2927 57786;57787;57788;57789;57790;57791;57792;57793;57794;57795;57796;57797 35358;35359;35360;35361 35361 4 DEVFALSNIQK Unmodified 1262.6507 0.65066678 415 P0A8A8 rimP Ribosome maturation factor RimP yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 38.393 36.627 2 3.0416E-05 18178 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.13 115.9 472140000 44169000 0 46488000 345300 0 0 37832000 38925000 43017000 0 0 0 55609000 0 0 0 0 0 62005000 73599000 69416000 0 739730 0 3019 415 2928 57798;57799;57800;57801;57802;57803;57804;57805;57806;57807;57808 35362;35363;35364;35365;35366;35367 35362 6 DEVIDHLGTIAK Unmodified 1309.6878 0.68778057 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 30.926 29.472 2;3 1.4834E-09 13749 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 179.57 148.35 4339200000 462900000 394190000 356090000 2920700 2391400 2737900 338600000 322530000 315610000 0 0 1420900 305940000 305690000 311400000 0 0 0 399130000 393210000 419470000 1910800 1230300 1877900 3020 295 2929 57809;57810;57811;57812;57813;57814;57815;57816;57817;57818;57819;57820;57821;57822;57823;57824;57825;57826;57827;57828;57829;57830;57831;57832;57833;57834;57835;57836;57837;57838;57839;57840;57841;57842 35368;35369;35370;35371;35372;35373;35374;35375;35376;35377;35378;35379;35380;35381;35382;35383;35384;35385;35386 35377 19 DEVILPYWR Unmodified 1189.6132 0.61315906 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.818 47.47 2 5.5612E-08 22289 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 160.91 149.85 1240200000 147380000 142600000 122240000 0 0 0 72590000 74202000 72781000 0 0 0 0 108070000 97142000 0 0 0 141500000 133780000 127950000 0 0 0 3021 638 2930 57843;57844;57845;57846;57847;57848;57849;57850;57851;57852;57853;57854 35387;35388;35389;35390;35391;35392;35393;35394;35395;35396;35397;35398 35396 12 DEVILTLNK Unmodified 1043.5863 0.58627561 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5 3 5 2 1 1 8 4 5 1 1 1 3 2 5 35.033 33.701 1;2 6.4273E-05 11704 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 145.34 122.82 14820000000 220600000 215900000 185360000 4637000 4826800 4359900 205070000 190770000 207190000 517510000 584980000 682630000 224610000 217260000 193050000 2863000000 2226900000 2428900000 232290000 253860000 272470000 997940000 954500000 931680000 3022 383 2931 57855;57856;57857;57858;57859;57860;57861;57862;57863;57864;57865;57866;57867;57868;57869;57870;57871;57872;57873;57874;57875;57876;57877;57878;57879;57880;57881;57882;57883;57884;57885;57886;57887;57888;57889;57890;57891;57892;57893;57894;57895;57896;57897;57898;57899;57900;57901;57902;57903;57904;57905;57906;57907;57908;57909;57910 35399;35400;35401;35402;35403;35404;35405;35406;35407;35408;35409;35410;35411;35412;35413;35414;35415;35416;35417;35418;35419;35420;35421;35422;35423;35424;35425;35426;35427;35428;35429;35430;35431;35432;35433;35434;35435;35436;35437;35438;35439;35440;35441;35442;35443;35444;35445;35446;35447;35448;35449;35450;35451;35452;35453;35454;35455;35456;35457;35458;35459;35460;35461;35462;35463 35399 61 DEVNELAEELGADVVVIGSR Unmodified 2113.0539 0.053892649 1512 P39177 uspG Universal stress protein G yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 55.543 54.072 2;3 4.0558E-31 26895 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 280.62 258.42 486220000 14964000 5367200 10579000 1743400 0 2948900 85482000 85557000 67083000 2608900 2389100 2061500 48346000 48596000 44673000 0 0 0 24527000 18805000 20492000 0 0 0 3023 1512 2932 57911;57912;57913;57914;57915;57916;57917;57918;57919;57920;57921;57922;57923;57924;57925;57926;57927;57928;57929;57930;57931;57932;57933;57934;57935;57936;57937;57938 35464;35465;35466;35467;35468;35469;35470;35471;35472;35473 35466 10 DEVPWWNVVGDR Unmodified 1470.6892 0.68917755 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 52.384 51.109 2 8.7784E-06 24928 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 130.94 124.7 212970000 17084000 18348000 18357000 0 0 0 11561000 13377000 13971000 3452700 0 0 14575000 17278000 15423000 0 0 0 21345000 22831000 25363000 0 0 0 3024 486 2933 57939;57940;57941;57942;57943;57944;57945;57946;57947;57948;57949;57950;57951 35474;35475;35476;35477;35478;35479;35480 35474 7 DEVRPIDTDPNVLVMPADGVISQLGK Unmodified 2777.4269 0.42694478 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 53.079 51.645 3 2.1088E-10 20709 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 118.63 115.76 133060000 15525000 17448000 13790000 0 0 0 0 34411000 0 11155000 14139000 10558000 0 0 0 0 0 0 0 0 0 0 5712000 10320000 3025 439 2934 57952;57953;57954;57955;57956;57957;57958;57959;57960 35481;35482;35483;35484 35483 4 DEVSAALDR Unmodified 974.46689 0.46688876 1315 P28248 dcd Deoxycytidine triphosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 22.097 22.079 2 4.5977E-05 9222 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.05 138.15 408240000 56253000 46898000 42505000 0 0 0 42285000 35100000 38720000 0 0 0 20570000 19890000 20999000 0 0 0 33823000 26116000 25084000 0 0 0 3026 1315 2935 57961;57962;57963;57964;57965;57966;57967;57968;57969;57970;57971;57972;57973 35485;35486;35487;35488;35489;35490;35491;35492;35493;35494;35495;35496 35486 12 DEYNPDK Unmodified 879.36103 0.3610267 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.203 12.035 2 0.0053367 2924 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 100.07 100.07 155770000 11510000 9045500 8157200 0 0 0 10662000 13269000 11748000 0 0 0 16370000 14929000 12525000 0 0 0 15439000 15488000 16623000 0 0 0 3027 883 2936 57974;57975;57976;57977;57978;57979;57980;57981;57982;57983;57984;57985 35497;35498;35499;35500;35501;35502;35503;35504 35504 7 DEYNPDKLR Unmodified 1148.5462 0.54620171 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 14.38 15.043 2;3 0.0018255 4640 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 94.302 90.368 180190000 11395000 11946000 14580000 606970 0 492850 16087000 14130000 15145000 4387100 5204700 5579800 9741800 9366000 9838900 0 0 0 16402000 18444000 16844000 0 0 0 3028 883 2937 57986;57987;57988;57989;57990;57991;57992;57993;57994;57995;57996;57997;57998;57999;58000;58001;58002;58003;58004 35505;35506;35507;35508;35509;35510;35511;35512 35511 8 DEYPEVLNVDNK Unmodified 1433.6674 0.66743906 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.322 32.804 2 0.0012141 15023 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 74.533 61.442 78363000 0 0 0 0 0 0 11967000 18427000 13532000 0 0 0 6023000 6543500 7449100 0 0 0 4673300 4887500 4861300 0 0 0 3029 500 2938 58005;58006;58007;58008;58009;58010;58011;58012;58013 35513;35514;35515;35516;35517 35517 3 DFADIEGADIAK Unmodified 1263.5983 0.59829686 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 37.571 35.963 2 7.3883E-05 17368 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.38 89.145 196120000 44203000 44278000 0 0 0 0 0 0 0 0 0 477460 19420000 17379000 21862000 0 0 0 14741000 17541000 16217000 0 0 0 3030 184 2939 58014;58015;58016;58017;58018;58019;58020;58021;58022;58023 35518;35519;35520;35521;35522;35523;35524 35522 7 DFAFAGSSVK Unmodified 1027.4975 0.4974606 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.8 29.444 2 0.0042245 13624 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 68.456 64.1 1147700000 380290000 363940000 314720000 0 0 0 8627300 6885600 7281200 0 0 0 5978600 7342100 7026200 0 0 0 12519000 15661000 17428000 0 0 0 3031 217 2940 58024;58025;58026;58027;58028;58029;58030;58031;58032;58033;58034;58035 35525;35526;35527;35528 35528 4 DFDAAFAK Unmodified 883.40758 0.40758296 1175 P21338 rna Ribonuclease I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.203 27.854 2 0.01425 12976 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.138 59.09 38686000 9231500 8963000 8010800 0 0 0 2389200 0 0 526850 0 0 1905900 1564500 0 0 0 0 2313400 0 3781200 0 0 0 3032 1175 2941 58036;58037;58038;58039;58040;58041;58042;58043;58044 35529;35530;35531 35529 3 DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALK Unmodified 4118.0273 0.027290553 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 1 1 2 2 2 2 2 55.436 53.963 3;4 1.1587E-37 26747 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 186.92 184.18 863450000 124040000 148520000 124300000 0 0 0 73889000 48634000 28402000 0 0 0 23303000 40049000 43260000 0 0 0 65783000 76983000 66291000 0 0 0 3033 549 2942 58045;58046;58047;58048;58049;58050;58051;58052;58053;58054;58055;58056;58057;58058;58059;58060;58061;58062;58063;58064;58065;58066 35532;35533 35533 2 DFDALNILRPDMEPR Unmodified 1800.8829 0.88286834 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.698 49.342 2;3 1.8666E-11 23989 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 186.76 162.78 1999200000 154720000 162830000 151220000 0 0 0 147950000 147900000 153910000 0 0 0 176720000 172300000 176040000 0 0 0 203680000 185480000 166440000 0 0 0 3034 1188 2943 58067;58068;58069;58070;58071;58072;58073;58074;58075;58076;58077;58078;58079;58080;58081;58082;58083;58084;58085;58086;58087;58088;58089;58090 35534;35535;35536;35537;35538;35539;35540;35541;35542;35543;35544;35545;35546;35547;35548;35549;35550;35551;35552;35553;35554;35555 35549 21 DFDDAVYCEK Unmodified 1260.4969 0.49686826 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 27.856 26.595 2 4.4991E-05 12070 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.26 138.26 79396000 23405000 23802000 20689000 0 0 0 4851900 3179300 3468200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3035 1181 2944 58091;58092;58093;58094;58095;58096 35556;35557;35558 35558 3 DFDGTFTFDEK Unmodified 1320.551 0.55101232 470 P0A8X2 yceI Protein YceI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 42.77 41.137 2 0.029325 20076 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 57.785 57.029 66264000 12426000 10143000 9172600 0 0 0 6859300 5253400 4334700 0 0 0 4218600 2579100 4973000 0 0 0 0 0 6303500 0 0 0 3036 470 2945 58097;58098;58099;58100;58101;58102;58103;58104;58105;58106 35559;35560;35561 35560 0 DFDNTVAIHPTAAEEFVTMR Unmodified 2263.0579 0.05793217 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.612 44.172 2;3 1.8127E-56 21396 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 288.46 270 1895300000 198010000 176630000 152790000 0 0 0 142360000 141440000 145650000 0 0 0 165320000 158230000 159220000 0 0 0 152930000 153710000 148990000 0 0 0 3037 128 2946 58107;58108;58109;58110;58111;58112;58113;58114;58115;58116;58117;58118;58119;58120;58121;58122;58123;58124;58125;58126;58127;58128;58129;58130 35562;35563;35564;35565;35566;35567;35568;35569;35570;35571;35572;35573;35574;35575;35576;35577;35578;35579;35580;35581 35571 17 DFEDAVEK Unmodified 951.41854 0.41854158 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.096 21.36 2 0.0033979 8558 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 92.47 49.556 681020000 53579000 52628000 43375000 5994000 5511500 5065700 99004000 92077000 92232000 5068500 0 0 49518000 37572000 31563000 0 0 0 34568000 35351000 37914000 0 0 0 3038 548 2947 58131;58132;58133;58134;58135;58136;58137;58138;58139;58140;58141;58142;58143;58144;58145;58146 35582;35583;35584;35585;35586;35587;35588;35589;35590;35591;35592;35593;35594 35585 12 DFELSGIGLPK Unmodified 1174.6234 0.6233894 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.666 47.335 2 5.5425E-05 23325 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.36 109.92 1191900000 118180000 134260000 103160000 0 0 0 100250000 107210000 95830000 0 0 0 74140000 73402000 69251000 0 0 0 103140000 103350000 109670000 0 0 0 3039 1298 2948 58147;58148;58149;58150;58151;58152;58153;58154;58155;58156;58157;58158 35595;35596;35597;35598;35599;35600;35601;35602;35603;35604;35605;35606 35596 12 DFFAGIR Unmodified 824.41809 0.41808807 417 P0A8C1 ybjQ UPF0145 protein YbjQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.127 37.516 2 0.0038447 14759 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 106.29 95.98 943010000 65527000 55093000 55591000 29862000 36265000 33501000 130940000 123940000 123640000 27422000 26529000 25130000 19450000 18639000 21560000 6636000 3430100 3448500 35396000 36954000 35780000 10266000 9160400 8852000 3040 417 2949 58159;58160;58161;58162;58163;58164;58165;58166;58167;58168;58169;58170;58171;58172;58173;58174;58175;58176;58177;58178;58179;58180;58181;58182 35607;35608;35609;35610;35611;35612;35613;35614;35615;35616;35617;35618;35619;35620;35621;35622;35623;35624;35625;35626;35627;35628;35629 35611 23 DFGESLLVYRPPIDTR Unmodified 1876.9683 0.96831253 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 47.734 46.181 2;3 2.9265E-24 22812 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 218.75 204.85 609380000 16533000 14527000 14669000 3485300 2596300 3297600 38957000 42812000 37120000 18065000 17282000 14962000 32882000 34324000 27603000 0 0 0 42128000 48626000 45264000 53736000 50781000 49728000 3041 205 2950 58183;58184;58185;58186;58187;58188;58189;58190;58191;58192;58193;58194;58195;58196;58197;58198;58199;58200;58201;58202;58203;58204 35630;35631;35632;35633;35634;35635;35636;35637;35638;35639;35640;35641;35642;35643;35644;35645;35646;35647;35648;35649;35650;35651;35652 35636 23 DFGKRPQVLDVPYLLSIQLDSFQK Unmodified 2805.5065 0.50651573 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 3 3 6 7 8 3 3 4 54.079 53.315 2;3;4 7.154E-126 20133 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 370.65 368.25 28565000000 0 0 0 14216000 8952400 12234000 0 0 0 1237400000 1066500000 975380000 0 0 0 5206700000 6687700000 7886500000 0 0 0 1975200000 1909900000 1584700000 3042 463 2951 58205;58206;58207;58208;58209;58210;58211;58212;58213;58214;58215;58216;58217;58218;58219;58220;58221;58222;58223;58224;58225;58226;58227;58228;58229;58230;58231;58232;58233;58234;58235;58236;58237;58238;58239;58240;58241;58242;58243;58244;58245;58246;58247;58248;58249;58250;58251 35653;35654;35655;35656;35657;35658;35659;35660;35661;35662;35663;35664;35665;35666;35667;35668;35669;35670;35671;35672;35673;35674;35675;35676;35677;35678;35679;35680;35681;35682;35683;35684;35685;35686;35687;35688 35670 34 DFGSVDNFK Unmodified 1027.4611 0.4610751 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 30.264 28.683 2 0.00028369 13358 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.27 109.88 6063700000 684310000 681420000 692330000 0 0 0 345390000 377240000 324970000 4053700 3523000 2967800 301820000 322960000 286650000 0 0 0 704250000 694560000 626740000 3232700 3324100 3941000 3043 28 2952 58252;58253;58254;58255;58256;58257;58258;58259;58260;58261;58262;58263;58264;58265;58266;58267;58268;58269;58270 35689;35690;35691;35692;35693;35694;35695;35696;35697;35698;35699;35700 35692 12 DFGSVDNFKAEFEK Unmodified 1631.7468 0.74675201 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 2 37.838 36.18 2;3 7.9868E-11 17618 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 170.68 169.89 557750000 80065000 71021000 67372000 0 778950 0 44733000 6174900 43428000 0 0 0 27774000 25136000 25558000 0 0 0 49603000 59530000 56574000 0 0 0 3044 28 2953 58271;58272;58273;58274;58275;58276;58277;58278;58279;58280;58281;58282;58283;58284;58285;58286;58287;58288;58289;58290;58291;58292;58293;58294 35701;35702;35703;35704;35705;35706;35707;35708;35709;35710;35711;35712;35713 35706 13 DFGVEFASR Unmodified 1026.4771 0.47705951 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 35.879 34.277 2 0.00077595 16472 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.54 65.356 124270000 7527200 0 0 0 0 0 11708000 13092000 12406000 0 0 0 12931000 12677000 10352000 0 0 0 14461000 13701000 15415000 0 0 0 3045 1148 2954 58295;58296;58297;58298;58299;58300;58301;58302;58303;58304 35714;35715;35716;35717;35718;35719 35714 5 DFGYAVFGK Unmodified 1002.4811 0.48108226 952 P0AFL3 ppiA Peptidyl-prolyl cis-trans isomerase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.382 39.708 2 0.0040333 19660 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 79.469 78.677 1261300000 94886000 84312000 76424000 0 0 0 103050000 104350000 103280000 0 0 0 92236000 91893000 85750000 0 0 0 151200000 136480000 137480000 0 0 0 3046 952 2955 58305;58306;58307;58308;58309;58310;58311;58312;58313;58314;58315;58316 35720;35721;35722;35723;35724;35725;35726;35727;35728 35721 9 DFHPDHGWESLLMR Unmodified 1738.7886 0.78857402 1066 P11071 aceK Isocitrate dehydrogenase kinase/phosphatase yes yes 0 0 0 By MS/MS By MS/MS 1 1 42.121 40.588 3 5.0272E-06 19722 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 106.29 106.29 22706000 0 10601000 12106000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3047 1066 2956 58317;58318 35729;35730 35730 2 DFKDESFISQFLSPK Unmodified 1786.8778 0.87776618 1327 P29013 ycgB Uncharacterized protein YcgB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.312 51.859 3 3.8539E-07 25633 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.33 117.71 115110000 21818000 17468000 20015000 0 0 0 10719000 13694000 12929000 0 0 0 4766600 3241700 0 0 0 0 3237000 2674600 4543100 0 0 0 3048 1327 2957 58319;58320;58321;58322;58323;58324;58325;58326;58327;58328;58329 35731;35732;35733;35734;35735 35733 5 DFLDPIVDK Unmodified 1060.5441 0.54407645 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 44.472 42.99 2 0.033207 20284 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 67.897 61.858 56072000 0 7653300 7460300 0 0 0 0 5476500 4284500 0 0 0 5400300 4637000 4789900 0 0 0 4936500 4794500 6638800 0 0 0 3049 1664 2958 58330;58331;58332;58333;58334;58335;58336;58337;58338;58339 35736;35737;35738;35739;35740 35738 5 DFLIATLK Unmodified 919.53787 0.53786886 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 44.798 43.156 2 0.074458 20225 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 54.611 41.563 18435000 0 0 0 0 0 0 3248500 3620200 3732800 0 0 0 2662000 2104900 3066500 0 0 0 0 0 0 0 0 0 3050 700 2959 58340;58341;58342;58343;58344;58345 35741 35741 1 DFLIATLKPR Unmodified 1172.6917 0.69174374 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 37.465 35.812 2;3 7.5686E-07 16565 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 182.69 179.58 1608300000 15189000 18890000 16712000 3098700 3487100 2834000 264340000 249670000 224540000 56656000 57119000 53986000 130710000 118440000 101670000 13416000 8507700 9462700 82302000 78417000 68920000 10783000 10324000 8857500 3051 700 2960 58346;58347;58348;58349;58350;58351;58352;58353;58354;58355;58356;58357;58358;58359;58360;58361;58362;58363;58364;58365;58366;58367;58368;58369;58370;58371;58372;58373;58374;58375;58376;58377;58378;58379;58380;58381;58382;58383;58384;58385;58386;58387;58388;58389;58390;58391;58392 35742;35743;35744;35745;35746;35747;35748;35749;35750;35751;35752;35753;35754;35755;35756;35757;35758;35759;35760;35761;35762;35763;35764;35765;35766;35767;35768;35769;35770;35771;35772;35773;35774;35775 35773 34 DFLQSDGKPGYFAQELQVYGR Unmodified 2417.1652 0.16517443 112 P05523 mutM Formamidopyrimidine-DNA glycosylase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 46.648 46.128 3 0.077276 21579 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 32.695 26.096 25082000 0 0 0 0 0 0 0 0 0 0 0 0 0 7112900 10175000 0 3898900 3895200 0 0 0 0 0 0 3052 112 2961 58393;58394;58395;58396 35776;35777 35776 2 DFLTLLEQQGELKR Unmodified 1688.9097 0.90973501 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 50.773 49.469 2;3 1.4777E-06 19782 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 120.84 113.95 273590000 24422000 25986000 24546000 3353000 4291700 3735300 16395000 18870000 15530000 5129300 5657200 4340800 13299000 11810000 12517000 2181100 0 0 26168000 23458000 19148000 4462200 3894100 4391700 3053 582 2962 58397;58398;58399;58400;58401;58402;58403;58404;58405;58406;58407;58408;58409;58410;58411;58412;58413;58414;58415;58416;58417;58418;58419;58420;58421;58422;58423;58424;58425;58426;58427;58428;58429;58430;58431;58432 35778;35779;35780;35781;35782;35783;35784;35785;35786;35787;35788;35789;35790;35791;35792 35779 9 DFLWGGAVAAHQVEGGWNK Unmodified 2040.9806 0.98060855 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 44.971 43.484 2;3 1.5328E-45 21042 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 263.83 242.79 1823400000 133950000 117210000 131180000 0 0 0 209810000 172320000 179820000 0 0 0 154340000 143440000 159610000 0 0 0 141270000 140410000 140080000 0 0 0 3054 1956 2963 58433;58434;58435;58436;58437;58438;58439;58440;58441;58442;58443;58444;58445;58446;58447;58448;58449;58450;58451;58452;58453;58454;58455;58456 35793;35794;35795;35796;35797;35798;35799;35800;35801;35802;35803;35804;35805;35806;35807;35808;35809;35810;35811;35812;35813;35814;35815;35816 35810 24 DFNCEDIISR Unmodified 1267.5503 0.55030081 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.759 31.33 2 8.8109E-07 14749 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 170.95 132.53 3414300000 160720000 124080000 116110000 1123200 975360 1193700 377260000 386850000 363200000 0 0 0 294490000 260780000 227540000 0 0 0 380260000 390910000 328800000 0 0 0 3055 596 2964 58457;58458;58459;58460;58461;58462;58463;58464;58465;58466;58467;58468;58469;58470;58471 35817;35818;35819;35820;35821;35822;35823;35824;35825;35826;35827;35828 35822 12 DFNEALVHQVVVAYAAGAR Unmodified 2029.0381 0.038123426 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 2 2 3 1 3 2 2 2 2 2 2 2 1 1 3 3 3 2 2 2 51.164 49.963 2;3;4 4.7127E-30 20301 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 274.09 274.09 2361000000 278460000 332660000 225610000 12052000 14331000 16539000 83374000 67135000 70494000 55661000 33947000 33770000 86897000 87394000 87132000 32345000 24811000 25410000 226130000 235490000 216030000 38319000 37505000 39556000 3056 1630 2965 58472;58473;58474;58475;58476;58477;58478;58479;58480;58481;58482;58483;58484;58485;58486;58487;58488;58489;58490;58491;58492;58493;58494;58495;58496;58497;58498;58499;58500;58501;58502;58503;58504;58505;58506;58507;58508;58509;58510;58511;58512;58513;58514;58515;58516;58517;58518;58519;58520;58521 35829;35830;35831;35832;35833;35834;35835;35836;35837;35838;35839;35840;35841;35842;35843;35844;35845;35846;35847;35848;35849;35850;35851;35852;35853;35854;35855;35856;35857;35858;35859;35860;35861;35862;35863;35864 35834 35 DFNPSGIILSGGPESTTEENSPR Unmodified 2403.119 0.1190121 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 46.594 45.159 2;3 4.5672E-53 22322 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 310.49 308 3098800000 270180000 238530000 205920000 1112200 2255800 0 210520000 208740000 198300000 0 0 0 295290000 289020000 261070000 0 0 0 311510000 300580000 303880000 0 0 1856100 3057 86 2966 58522;58523;58524;58525;58526;58527;58528;58529;58530;58531;58532;58533;58534;58535;58536;58537;58538;58539;58540;58541;58542;58543;58544;58545;58546;58547;58548 35865;35866;35867;35868;35869;35870;35871;35872;35873;35874;35875;35876;35877;35878;35879;35880;35881;35882;35883;35884;35885;35886;35887;35888 35865 24 DFNSYGSR Unmodified 944.39881 0.39880919 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.519 16.347 2 0.00081197 5495 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.13 92.555 299610000 62650000 70264000 58105000 203830 0 174950 23769000 21465000 19957000 0 0 0 5539700 3959600 4248200 0 0 0 9487800 10589000 9200700 0 0 0 3058 1254 2967 58549;58550;58551;58552;58553;58554;58555;58556;58557;58558;58559;58560;58561;58562 35889;35890;35891;35892;35893;35894 35894 3 DFPGAQYPER Unmodified 1178.5356 0.53563702 260 P0A6L7 uxaB Altronate oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 25.995 24.826 2 0.00062856 10766 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 90.657 90.657 41094000 0 0 0 0 0 0 8220000 8206200 8039600 0 0 0 3695500 2667100 5535400 0 0 0 2385400 0 2345000 0 0 0 3059 260 2968 58563;58564;58565;58566;58567;58568;58569;58570 35895;35896 35896 2 DFQEEVAK Unmodified 964.45018 0.45017606 599 P0AAJ5 fdoH Formate dehydrogenase-O iron-sulfur subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 17.702 18.287 2 0.0031836 5493 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 94.262 86.591 74791000 0 0 0 14531000 10067000 11431000 6629400 0 0 0 2844800 3266500 4574500 4520200 0 0 0 0 5227900 6240900 5457500 0 0 0 3060 599 2969 58571;58572;58573;58574;58575;58576;58577;58578;58579;58580;58581 35897;35898 35897 2 DFQQFGK Unmodified 868.40792 0.40791731 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.51 21.639 2 0.019655 8830 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.496 70.585 335470000 20438000 20334000 16483000 1266500 723300 686290 35332000 35082000 37058000 0 1335900 1730600 28147000 21790000 21926000 0 0 0 31881000 29289000 28692000 1805300 1469200 0 3061 804 2970 58582;58583;58584;58585;58586;58587;58588;58589;58590;58591;58592;58593;58594;58595;58596;58597;58598;58599;58600 35899;35900;35901;35902;35903;35904 35901 5 DFQQLALIR Unmodified 1102.6135 0.61349341 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.985 42.47 2 3.1717E-05 20750 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 153.73 138.95 760110000 82324000 72057000 74006000 0 0 0 83428000 80444000 77906000 0 0 0 43248000 44181000 52429000 0 0 0 46782000 50334000 52974000 0 0 0 3062 1375 2971 58601;58602;58603;58604;58605;58606;58607;58608;58609;58610;58611;58612 35905;35906;35907;35908;35909 35905 5 DFSALIAR Unmodified 891.48142 0.48141661 93 P04816 livK Leucine-specific-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 38.846 37.407 2 0.00043507 18134 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.27 81.021 22988000 8186900 8629900 6170800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3063 93 2972 58613;58614;58615 35910;35911;35912 35911 3 DFSAQVLR Unmodified 934.48723 0.48723027 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 30.202 28.515 2 0.0012605 13414 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.34 98.077 195770000 0 0 0 0 0 0 21336000 23051000 21993000 665820 1198200 1210500 0 19846000 17740000 0 0 0 31876000 30377000 26478000 0 0 0 3064 1564 2973 58616;58617;58618;58619;58620;58621;58622;58623;58624;58625;58626 35913 35913 1 DFSFIIK Unmodified 868.46945 0.46945494 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 46.833 45.443 1;2 0.0030669 21198 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.86 79.455 3273600000 368830000 331710000 326200000 0 0 0 305390000 338810000 289660000 0 0 0 189980000 185380000 204540000 0 0 0 243110000 268390000 221560000 0 0 0 3065 31 2974 58627;58628;58629;58630;58631;58632;58633;58634;58635;58636;58637;58638;58639;58640;58641;58642;58643;58644;58645;58646;58647;58648;58649;58650 35914;35915;35916;35917 35917 3 DFSHYQDIMGWYNK Unmodified 1802.7723 0.77225526 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.088 43.673 2 0.00067059 21124 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.953 59.387 65639000 5117200 5552900 4736000 0 0 0 7170300 5755800 4487600 0 0 0 3291200 3588000 5116400 0 0 0 7795400 5861000 7167200 0 0 0 3066 1548 2975 58651;58652;58653;58654;58655;58656;58657;58658;58659;58660;58661;58662 35918;35919;35920;35921;35922 35920 3 DFSQDVDRK Unmodified 1108.5149 0.51490158 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.141 13.804 2 0.0062558 3469 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 76.064 52.993 45499000 0 0 0 0 0 0 0 4512500 5705800 2921800 2168300 3620100 3322900 3629600 2872000 0 0 0 4291400 4340400 6838900 0 0 1275200 3067 1047 2976 58663;58664;58665;58666;58667;58668;58669;58670;58671;58672;58673;58674 35923;35924;35925 35924 3 DFSTLVAR Unmodified 907.47633 0.47633123 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 32.313 31.045 2 0.00037014 14570 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.02 127.39 197070000 66863000 59909000 62013000 0 0 0 0 1547300 0 0 0 0 0 1752600 0 0 0 0 0 2271300 2710200 0 0 0 3068 774 2977 58675;58676;58677;58678;58679;58680;58681 35926;35927;35928 35927 3 DFTIDSK Unmodified 824.3916 0.39159855 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 21.33 21.769 2 0.018022 8633 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.146 71.732 218350000 81069000 66281000 70999000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3069 1464 2978 58682;58683;58684 35929;35930;35931 35931 3 DFTLCADMFK Unmodified 1246.5362 0.53623065 347 P0A7I7 ribA GTP cyclohydrolase-2 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.773 48.367 2 0.00014418 23878 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 126.41 126.41 457050000 35925000 29272000 32168000 0 0 0 37440000 37282000 32709000 0 0 0 42868000 38289000 36586000 0 0 0 47946000 44295000 42270000 0 0 0 3070 347 2979 58685;58686;58687;58688;58689;58690;58691;58692;58693;58694;58695;58696 35932;35933;35934;35935;35936;35937;35938;35939;35940 35933 9 DFTLVSVDLMK Unmodified 1266.653 0.65297497 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.576 52.137 2 0.00027596 25852 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 111.61 108.77 424680000 67447000 66926000 65810000 0 0 0 34417000 37868000 34851000 0 0 0 19629000 20566000 22786000 0 0 0 18761000 18322000 17296000 0 0 0 3071 510 2980 58697;58698;58699;58700;58701;58702;58703;58704;58705;58706;58707;58708 35941;35942;35943;35944;35945 35941 3 DFTQQLENDMR Unmodified 1395.6089 0.60887832 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 41.257 39.538 2 7.9458E-09 13970 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 179.8 177.65 48707000 0 0 0 16111000 17819000 14777000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3072 1904 2981 58709;58710;58711 35946;35947;35948 35947 3 DFVAAVLPK Unmodified 958.54877 0.54876789 824 P0ADZ7 yajC UPF0092 membrane protein YajC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 3 2 2 2 40.846 39.123 1;2 0.0019717 15749 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 86.794 66.947 3268800000 140460000 119960000 113090000 40605000 45237000 46675000 294980000 255630000 254070000 90751000 77872000 84376000 174690000 172440000 182610000 17728000 12102000 11687000 304030000 296140000 313200000 75219000 78226000 67025000 3073 824 2982 58712;58713;58714;58715;58716;58717;58718;58719;58720;58721;58722;58723;58724;58725;58726;58727;58728;58729;58730;58731;58732;58733;58734;58735;58736;58737;58738;58739;58740;58741;58742;58743;58744;58745;58746;58747;58748;58749;58750;58751;58752;58753;58754;58755;58756;58757 35949;35950;35951;35952;35953;35954;35955;35956;35957;35958;35959;35960;35961;35962;35963;35964;35965;35966;35967;35968;35969;35970;35971;35972;35973;35974;35975 35952 22 DFVAAWVK Unmodified 934.49125 0.49125301 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.626 39.792 2 0.012865 19637 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 74.415 60.863 2413000000 232370000 233380000 229330000 1330100 1624600 1659700 306350000 260900000 283860000 1155200 1574500 1151600 149490000 140590000 138370000 0 0 0 132920000 149920000 147060000 0 0 0 3074 1086 2983 58758;58759;58760;58761;58762;58763;58764;58765;58766;58767;58768;58769;58770;58771;58772;58773;58774;58775 35976;35977;35978;35979;35980;35981;35982;35983;35984;35985;35986;35987;35988 35979 13 DFVADGGSLIGLVK Unmodified 1389.7504 0.75038083 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 52.297 51.001 2 0.00038951 25213 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 96.229 88.501 126480000 47678000 3615500 0 0 0 0 19234000 17977000 18902000 0 0 0 1349200 0 0 0 0 0 10219000 0 7502800 0 0 0 3075 1887 2984 58776;58777;58778;58779;58780;58781;58782;58783 35989;35990;35991 35990 3 DFVEFPSQINEHWATHPQVFAR Unmodified 2654.2666 0.26661981 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 3 2 2 2 44.244 42.745 3;4 7.0307E-35 20809 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 207.56 204.07 914390000 129950000 118860000 116180000 0 0 0 86003000 82540000 76737000 0 0 0 42638000 36846000 31034000 0 0 0 62446000 66938000 64214000 0 0 0 3076 1233 2985 58784;58785;58786;58787;58788;58789;58790;58791;58792;58793;58794;58795;58796;58797;58798;58799;58800;58801;58802;58803;58804;58805;58806;58807;58808;58809 35992;35993;35994;35995;35996;35997;35998;35999;36000;36001;36002;36003;36004;36005;36006;36007;36008;36009;36010;36011 36002 20 DFVNSGKPVFAICHGPQLLISADVIR Unmodified 2852.5007 0.50071885 1570 P45470 yhbO Protein YhbO yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 1 2 2 2 1 1 1 1 1 1 49.815 48.374 3;4 3.5079E-22 23869 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 160.99 158.57 526290000 129940000 122430000 30690000 0 0 0 63879000 74907000 65752000 0 0 0 3561000 4568200 4067800 0 0 0 9491700 9948900 7063000 0 0 0 3077 1570 2986 58810;58811;58812;58813;58814;58815;58816;58817;58818;58819;58820;58821;58822;58823;58824;58825;58826 36012;36013;36014;36015;36016;36017;36018;36019;36020;36021;36022 36017 11 DFVPYFR Unmodified 942.45995 0.45995289 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 41.862 40.133 2 0.0018142 19543 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 123.34 123.34 944330000 123730000 102950000 109880000 0 0 0 86371000 89415000 76783000 0 0 0 48805000 51243000 45355000 0 0 0 68351000 68332000 72678000 0 439030 0 3078 43 2987 58827;58828;58829;58830;58831;58832;58833;58834;58835;58836;58837;58838;58839 36023;36024;36025;36026;36027;36028;36029;36030;36031;36032;36033;36034 36027 12 DFVVLTGNAYLQQVDSNIK Unmodified 2123.0899 0.089884225 811 P0ADV1 lptA Lipopolysaccharide export system protein LptA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.046 51.616 3 9.5964E-07 25671 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 93.684 90.295 108980000 12657000 14480000 9261300 0 0 0 10887000 13191000 0 0 0 0 0 0 11431000 0 0 0 11087000 15208000 10781000 0 0 0 3079 811 2988 58840;58841;58842;58843;58844;58845;58846;58847;58848 36035 36035 1 DFVVLTGNAYLQQVDSNIKGDK Unmodified 2423.2333 0.233254 811 P0ADV1 lptA Lipopolysaccharide export system protein LptA yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.773 47.442 3 3.4899E-10 23081 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.52 113.41 179440000 13073000 13753000 11715000 0 0 0 17365000 16166000 15738000 0 0 0 13094000 10417000 11405000 0 0 0 18096000 22288000 16332000 0 0 0 3080 811 2989 58849;58850;58851;58852;58853;58854;58855;58856;58857;58858;58859;58860 36036;36037;36038;36039;36040;36041;36042 36037 7 DFVWCQEEPLNQGAWYCSQHHFR Unmodified 2993.2762 0.276215 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 2 2 42.298 40.524 3;4 1.3301E-75 19738 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 294.12 287.13 2878500000 221050000 185640000 190660000 5160500 7197100 5746900 133620000 125820000 137500000 7387000 9741300 5369000 172210000 208870000 144330000 0 3289000 0 389490000 392240000 450970000 21279000 29087000 31833000 3081 937 2990 58861;58862;58863;58864;58865;58866;58867;58868;58869;58870;58871;58872;58873;58874;58875;58876;58877;58878;58879;58880;58881;58882;58883;58884;58885;58886;58887;58888;58889;58890;58891;58892;58893;58894;58895;58896 36043;36044;36045;36046;36047;36048;36049;36050;36051;36052;36053;36054;36055;36056;36057;36058;36059;36060;36061;36062;36063;36064;36065;36066;36067;36068 36054 25 DFWDGPMVIK Unmodified 1206.5743 0.57433072 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.214 49.899 2 0.004059 24706 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.423 65.852 184760000 9831100 9247200 9614300 3011000 2223700 2924100 13652000 10933000 10316000 5463700 4777500 5537900 7636200 9060700 10188000 0 0 0 20339000 21399000 16591000 4436300 3254500 4320600 3082 1417 2991 58897;58898;58899;58900;58901;58902;58903;58904;58905;58906;58907;58908;58909;58910;58911;58912;58913;58914;58915;58916;58917 36069;36070;36071;36072;36073;36074;36075 36069 7 DGAAGVFLAANTFPK Unmodified 1477.7565 0.75652884 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 1 2 1 1 1 2 1 46.858 45.621 2;3 1.4119E-08 22488 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 144.1 134.15 435340000 3112000 42221000 39736000 0 0 0 4058200 63438000 53745000 0 0 0 68611000 4713400 56496000 0 7090900 6290600 4195500 78731000 2901100 0 0 0 3083 124 2992 58918;58919;58920;58921;58922;58923;58924;58925;58926;58927;58928;58929;58930;58931;58932;58933;58934;58935;58936 36076;36077;36078;36079;36080;36081;36082;36083;36084;36085 36078 8 DGAALGYSHGFNIVEVGEQIR Unmodified 2231.0971 0.097094868 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 45.198 43.892 2 3.2299E-43 21454 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 273.49 244.69 20529000 9002300 7333600 4193000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3084 119 2993 58937;58938;58939 36086 36086 1 DGAANSHAAIMVR Unmodified 1311.6354 0.63536784 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By MS/MS 1 14.655 15.406 3 0.16665 5152 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 6.6684 0 12098000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12098000 0 0 0 3085 1459 2994 58940 36087 36087 1 DGADGVISR Unmodified 888.43011 0.43010932 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.646 15.416 2 4.1275E-08 5151 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 195.06 126.58 1714700000 53971000 54324000 47070000 0 654410 809760 241430000 246920000 257390000 0 0 0 169370000 131380000 153110000 0 0 0 133120000 110030000 113940000 0 0 1129500 3086 1805 2995 58941;58942;58943;58944;58945;58946;58947;58948;58949;58950;58951;58952;58953;58954;58955 36088;36089;36090;36091;36092 36091 4 DGAEDAQDDLVPSIQDDGCESGACK Unmodified 2651.0599 0.059918597 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 1 2 2 2 2 2 2 2 2 2 37.127 35.461 2;3 3.2223E-60 17185 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 258.16 257.89 357100000 36898000 32522000 10333000 0 0 0 28508000 29930000 32285000 0 0 0 31590000 27195000 18344000 0 0 0 36371000 34580000 38546000 0 0 0 3087 29 2996 58956;58957;58958;58959;58960;58961;58962;58963;58964;58965;58966;58967;58968;58969;58970;58971;58972;58973;58974;58975;58976;58977;58978 36093;36094;36095;36096;36097;36098;36099 36095 5 DGAEDAQDDLVPSIQDDGCESGACKI Unmodified 2764.144 0.14398258 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 42.968 41.443 3 2.2151E-15 20181 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 135.66 134.68 104860000 11119000 11283000 9391500 0 0 0 0 7612600 5665400 0 0 0 0 9806100 10111000 0 0 0 12444000 15754000 11679000 0 0 0 3088 29 2997 58979;58980;58981;58982;58983;58984;58985;58986;58987;58988 36100;36101;36102 36101 3 DGAQLAALRPEVAEQTETMEQAMR Unmodified 2644.2585 0.25849925 1098 P14900 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.698 42.183 3 1.1351E-71 20539 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 272.24 270.02 392630000 43980000 31615000 31907000 0 0 0 30525000 26222000 35526000 0 0 0 34056000 25067000 31067000 0 0 0 30526000 34363000 37781000 0 0 0 3089 1098 2998 58989;58990;58991;58992;58993;58994;58995;58996;58997;58998;58999;59000 36103;36104;36105;36106;36107;36108;36109;36110 36107 8 DGAVEAEDR Unmodified 960.41485 0.41485319 396 P0A850 tig Trigger factor yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.07 11.889 2 7.3326E-05 3023 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.01 143.01 1083100000 74111000 81926000 83077000 0 0 0 78552000 76756000 70298000 0 0 0 119320000 86573000 95271000 0 0 0 114730000 105690000 96839000 0 0 0 3090 396 2999 59001;59002;59003;59004;59005;59006;59007;59008;59009;59010;59011;59012 36111;36112;36113;36114;36115;36116;36117;36118;36119 36116 9 DGAVMVMSYGNSEEDSQEHTGSQLR Unmodified 2726.1548 0.15482204 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 30.398 28.838 2;3 1.6082E-60 13806 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 256.9 256.9 1765900000 0 0 0 3034700 2318000 0 115850000 117470000 109910000 2516400 2257900 2506700 255280000 239310000 235930000 0 0 0 221920000 233980000 220900000 0 0 2718600 3091 38 3000 59013;59014;59015;59016;59017;59018;59019;59020;59021;59022;59023;59024;59025;59026;59027;59028;59029;59030;59031;59032;59033;59034;59035;59036 36120;36121;36122;36123;36124;36125;36126;36127;36128;36129;36130;36131;36132;36133 36120 14 DGAYDLVVPSTYYVDK Unmodified 1803.8567 0.85669639 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 2 1 2 2 2 2 2 2 48.369 47.06 2;3 3.5309E-08 23101 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 142.91 136.94 616350000 62113000 45913000 39132000 0 0 0 28366000 28679000 25329000 0 0 0 71320000 63879000 67146000 0 0 0 58148000 63076000 63245000 0 0 0 3092 951 3001 59037;59038;59039;59040;59041;59042;59043;59044;59045;59046;59047;59048;59049;59050;59051;59052;59053;59054;59055;59056 36134;36135;36136;36137;36138;36139;36140;36141;36142;36143 36136 10 DGAYVTLR Unmodified 893.46068 0.46068117 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 1 2 1 2 1 2 1 1 1 2 2 2 1 2 1 24.48 23.639 2 0.0004427 10071 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.83 114.47 4693700000 664900000 646240000 576050000 0 27071000 25222000 164550000 0 182010000 47001000 0 711690 299130000 256440000 265830000 49726000 31792000 33906000 405840000 428290000 424710000 49481000 52591000 62235000 3093 1620 3002 59057;59058;59059;59060;59061;59062;59063;59064;59065;59066;59067;59068;59069;59070;59071;59072;59073;59074;59075;59076;59077;59078;59079;59080;59081;59082;59083;59084;59085;59086;59087 36144;36145;36146;36147;36148;36149;36150;36151;36152;36153;36154;36155;36156;36157;36158;36159;36160;36161 36147 17 DGDAVER Unmodified 760.33515 0.3351463 736 P0ACM2 rspR HTH-type transcriptional repressor RspR yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.332 12.024 2 0.011343 2835 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 85.89 65.019 64805000 1591000 1158400 1270000 12116000 7506900 10259000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12040000 10208000 8654800 3094 736 3003 59088;59089;59090;59091;59092;59093;59094;59095;59096 36162;36163;36164;36165 36163 3 DGDGFAWIER Unmodified 1164.52 0.51998696 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.845 42.108 2 1.6549E-06 20546 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 162.59 127.29 1382600000 162510000 146520000 128600000 0 0 0 123560000 122560000 121750000 2025500 1784000 1079100 89560000 71383000 45909000 0 0 0 122640000 129060000 112640000 1003600 0 0 3095 784 3004 59097;59098;59099;59100;59101;59102;59103;59104;59105;59106;59107;59108;59109;59110;59111;59112 36166;36167;36168;36169;36170;36171;36172;36173;36174;36175;36176;36177 36169 12 DGDHYATLNTAQK Unmodified 1432.6583 0.65827136 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 13.482 14.348 2;3 1.7051E-31 4558 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 262.39 219.31 999200000 93651000 99906000 85455000 0 0 0 95134000 98338000 94613000 0 0 0 64342000 71169000 56042000 0 0 0 92223000 80599000 67733000 0 0 0 3096 1298 3005 59113;59114;59115;59116;59117;59118;59119;59120;59121;59122;59123;59124;59125;59126;59127;59128;59129;59130;59131;59132;59133;59134;59135;59136 36178;36179;36180;36181;36182;36183;36184;36185;36186;36187 36178 9 DGDISILELNVTLPEAEELK Unmodified 2197.1366 0.13655965 306 P0A734 minE Cell division topological specificity factor yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 55.19 53.804 2 2.9329E-24 25527 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 262.37 255.79 329620000 0 51966000 45362000 0 4016000 1470300 0 0 0 0 0 0 57722000 41505000 31899000 0 0 0 0 46067000 49607000 0 0 0 3097 306 3006 59137;59138;59139;59140;59141;59142;59143;59144;59145 36188;36189;36190;36191;36192;36193 36192 6 DGDIVNIDVTVIK Unmodified 1399.7559 0.75586013 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.958 45.617 2 0.00098916 22578 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 68.536 58.078 282060000 24795000 20004000 21684000 0 0 0 26937000 28574000 27288000 0 0 732240 23547000 16977000 15688000 0 0 1065300 23818000 26726000 22963000 1265100 0 0 3098 829 3007 59146;59147;59148;59149;59150;59151;59152;59153;59154;59155;59156;59157;59158;59159;59160 36194;36195;36196;36197;36198;36199;36200 36194 3 DGDLVLIDAGCEYK Unmodified 1566.7236 0.72357373 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.208 41.676 2 3.8233E-08 20316 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.37 134.79 990230000 119430000 118420000 94275000 660840 569770 0 101400000 97637000 91564000 0 0 0 55162000 49904000 45529000 0 0 0 77855000 65030000 72791000 0 0 0 3099 1100 3008 59161;59162;59163;59164;59165;59166;59167;59168;59169;59170;59171;59172;59173;59174 36201;36202;36203;36204;36205;36206;36207;36208;36209;36210;36211 36207 11 DGDQSYIR Unmodified 952.42502 0.42502394 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.265 15.764 2 0.010593 4050 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 78.149 63.374 186240000 0 0 0 0 0 0 8069700 6537500 5611900 0 15629000 13654000 10850000 6071600 8776800 4951500 3635000 4117100 22497000 21758000 22937000 10384000 10335000 10422000 3100 75 3009 59175;59176;59177;59178;59179;59180;59181;59182;59183;59184;59185;59186;59187;59188;59189;59190;59191 36212;36213 36212 2 DGDTLLVQVK Unmodified 1086.5921 0.59208927 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 32.941 31.451 2 0.0034567 14828 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.713 69.726 2012400000 0 0 0 1048100 1306900 1311500 6867700 0 0 0 0 0 8720900 7456300 8922400 0 0 0 0 0 13300000 0 0 1963500000 3101 486 3010 59192;59193;59194;59195;59196;59197;59198;59199;59200 36214;36215;36216;36217;36218 36215 0 DGEDPGYTLYDLSER Unmodified 1728.7479 0.74787422 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 1 1 1 1 1 1 43.697 42.138 2;3 1.6521E-56 20666 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 302.09 302.09 1130800000 115070000 93723000 93056000 0 0 0 283350000 268360000 239940000 0 0 0 5671200 5427100 4424700 0 0 0 7503600 7182500 7107300 0 0 0 3102 1755;1756 3011 59201;59202;59203;59204;59205;59206;59207;59208;59209;59210;59211;59212;59213;59214;59215;59216;59217;59218 36219;36220;36221;36222;36223;36224;36225;36226;36227;36228 36223 9 DGEIFLLHDDNLER Unmodified 1684.8057 0.80566387 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 1 2 2 2 2 2 2 41.356 39.631 2;3 2.9277E-11 19276 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 174.23 157.59 2574500000 33334000 40126000 33933000 0 0 865060 183280000 188170000 176200000 1508100 0 0 211380000 177680000 154230000 0 0 0 520500000 435060000 418260000 0 0 0 3103 1065 3012 59219;59220;59221;59222;59223;59224;59225;59226;59227;59228;59229;59230;59231;59232;59233;59234;59235;59236;59237;59238;59239;59240;59241;59242;59243 36229;36230;36231;36232;36233;36234;36235;36236;36237;36238;36239 36234 11 DGEIVGEGYHQR Unmodified 1358.6215 0.62149192 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 2 2 1 14.449 15.06 2;3 1.3275E-11 4619 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 182.76 176.73 310780000 29186000 24260000 26177000 0 0 0 14976000 12628000 15232000 2108200 2566600 2569700 21499000 24332000 22146000 0 0 0 29848000 34856000 33537000 7191700 5961500 1708000 3104 1262 3013 59244;59245;59246;59247;59248;59249;59250;59251;59252;59253;59254;59255;59256;59257;59258;59259;59260;59261;59262;59263;59264;59265;59266;59267;59268;59269;59270;59271;59272 36240;36241;36242;36243;36244;36245;36246;36247;36248;36249;36250 36247 11 DGEIVQYVPFDK Unmodified 1408.6874 0.68744622 1084 P13016 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.558 42.043 2 0.00067732 20512 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 81.799 76.258 98674000 8996200 9255700 9964100 0 0 0 9037600 8663200 7432400 0 0 0 6159500 6806500 6628800 0 0 0 8542000 8523500 8664300 0 0 0 3105 1084 3014 59273;59274;59275;59276;59277;59278;59279;59280;59281;59282;59283;59284 36251 36251 1 DGEMEESK Unmodified 923.35423 0.35422676 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 9.7175 10.554 2 0.0078415 2411 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 82.671 82.671 53617000 12616000 11067000 12679000 0 0 0 0 0 0 0 0 0 2681500 2494100 1898500 0 0 0 3644200 3427100 3108800 0 0 0 3106 1632 3015 59285;59286;59287;59288;59289;59290;59291;59292;59293 36252;36253;36254 36253 3 DGEPETPPNNWR Unmodified 1410.6164 0.61640654 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 1 1 23.436 22.729 2 3.0744E-10 9906 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 207.29 205.44 1077500000 0 0 0 0 0 0 84991000 85062000 91712000 0 0 0 115680000 154640000 115030000 0 0 0 121170000 165180000 143980000 0 0 0 3107 1324 3016 59294;59295;59296;59297;59298;59299;59300;59301;59302;59303;59304 36255;36256;36257;36258;36259;36260;36261;36262;36263;36264 36259 10 DGEPVTLDWK Unmodified 1158.5557 0.55570376 1016 P0AGG0 thiL Thiamine-monophosphate kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 37.269 35.616 2 0.0028962 17208 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 76.221 71.806 78965000 12722000 9142600 11270000 0 0 0 2711000 1903900 0 0 0 0 0 5177700 5676500 0 0 0 9671400 10921000 9768100 0 0 0 3108 1016 3017 59305;59306;59307;59308;59309;59310;59311;59312;59313;59314 36265;36266 36266 2 DGETVISWEK Unmodified 1162.5506 0.55061839 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.684 31.286 2 0.0012005 15062 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.136 71.466 925030000 93078000 75693000 66709000 0 574510 503430 70194000 77361000 70613000 0 0 0 79802000 64563000 65827000 0 0 0 88983000 86133000 84993000 0 0 0 3109 295 3018 59315;59316;59317;59318;59319;59320;59321;59322;59323;59324;59325;59326;59327;59328 36267;36268;36269;36270;36271;36272 36267 2 DGEVIIVDEHTGR Unmodified 1438.7052 0.70522155 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 23.034 22.4 2;3 1.0948E-23 9743 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 227.27 227.27 1461100000 53681000 51238000 59232000 7340100 8687100 8581100 90991000 82976000 89233000 56984000 73086000 84585000 74672000 65049000 72629000 37884000 35442000 32550000 95336000 111600000 104800000 62112000 53261000 49112000 3110 1057 3019 59329;59330;59331;59332;59333;59334;59335;59336;59337;59338;59339;59340;59341;59342;59343;59344;59345;59346;59347;59348;59349;59350;59351;59352;59353;59354;59355;59356;59357;59358;59359;59360;59361;59362;59363;59364;59365;59366;59367;59368;59369;59370;59371;59372;59373;59374;59375;59376 36273;36274;36275;36276;36277;36278;36279;36280;36281;36282;36283;36284;36285;36286;36287;36288;36289;36290;36291;36292;36293;36294;36295;36296;36297;36298;36299;36300;36301;36302;36303;36304;36305 36283 29 DGEYIEADLMVWAAGIK Unmodified 1879.9026 0.90260073 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 55.577 54.075 2 2.0662E-10 21976 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 142.08 138.94 29252000 2459600 0 0 0 0 0 14659000 0 0 0 12133000 0 0 0 0 0 0 0 0 0 0 0 0 0 3111 27 3020 59377;59378;59379 36306 36306 1 DGFETYDK Unmodified 973.40289 0.40289152 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.996 19.561 2 0.087467 7466 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 51.864 51.864 114360000 14453000 14771000 12735000 0 0 0 6863600 5585500 5967300 0 0 0 7707900 6782700 7098600 0 0 0 9560600 10499000 12333000 0 0 0 3112 623 3021 59380;59381;59382;59383;59384;59385;59386;59387;59388;59389;59390;59391 36307;36308 36307 2 DGFHGDTSK Unmodified 962.40937 0.40937388 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 8.5563 9.3804 2 9.9736E-05 2008 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 136.21 136.21 307960000 55787000 57632000 33396000 0 0 0 19731000 15751000 18582000 0 0 0 13410000 13311000 8018700 0 0 0 24400000 24724000 23212000 0 0 0 3113 829 3022 59392;59393;59394;59395;59396;59397;59398;59399;59400;59401;59402;59403 36309;36310;36311;36312;36313;36314;36315;36316;36317;36318;36319 36318 10 DGFIVNDALADDLK Unmodified 1504.7409 0.74093835 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 1 1 1 1 49.782 48.402 2 3.1736E-06 23544 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.96 109.8 166760000 0 22508000 17474000 0 0 0 25977000 0 19608000 0 0 0 12092000 11270000 11856000 0 0 0 13989000 15650000 16340000 0 0 0 3114 1155 3023 59404;59405;59406;59407;59408;59409;59410;59411;59412;59413;59414 36320;36321;36322;36323;36324;36325 36323 6 DGFSLYDR Unmodified 971.43486 0.43486035 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.2 30.86 2 0.00012229 14680 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.34 152.99 473910000 48451000 56139000 45475000 0 0 0 39808000 31473000 37681000 0 0 0 34155000 34442000 32574000 0 0 0 40320000 35568000 37821000 0 0 0 3115 111 3024 59415;59416;59417;59418;59419;59420;59421;59422;59423;59424;59425;59426 36326;36327;36328;36329;36330;36331;36332;36333;36334 36328 9 DGFSTDQSK Unmodified 983.4196 0.41960421 1590 P46887 yecH Uncharacterized protein YecH yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.175 12.995 2 0.0024313 3510 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 85.161 81.308 76821000 0 0 0 0 0 0 12364000 9872600 9219400 0 0 597190 8737000 7295400 6678300 0 0 0 5912600 7577700 8566800 0 0 0 3116 1590 3025 59427;59428;59429;59430;59431;59432;59433;59434;59435;59436 36335;36336;36337 36337 3 DGFVIAGGGGMVVVEELEHALAR Unmodified 2325.1787 0.17871601 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 2 1 2 2 2 2 1 55.595 54.131 2;3 3.3859E-118 26820 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 365.06 356.88 10022000000 1460000000 1474100000 1457100000 6220200 0 5152400 733180000 609140000 590690000 0 2660800 2564300 785880000 109260000 616790000 0 0 0 753660000 730260000 684710000 1118900 0 0 3117 489 3026 59437;59438;59439;59440;59441;59442;59443;59444;59445;59446;59447;59448;59449;59450;59451;59452;59453;59454;59455;59456;59457;59458;59459;59460;59461;59462;59463;59464 36338;36339;36340;36341;36342;36343;36344;36345;36346;36347;36348;36349;36350;36351;36352;36353;36354;36355;36356;36357;36358;36359;36360 36352 23 DGFVLGDGAGMLVLEEYEHAK Unmodified 2249.0674 0.067434223 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.198 52.757 2;3 1.2966E-55 25979 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 252.66 231.8 4874200000 270220000 216770000 238440000 0 0 0 354220000 397250000 373790000 0 0 0 597260000 520980000 479850000 0 0 0 485640000 456340000 483420000 0 0 0 3118 596 3027 59465;59466;59467;59468;59469;59470;59471;59472;59473;59474;59475;59476;59477;59478;59479;59480;59481;59482;59483;59484;59485;59486;59487;59488 36361;36362;36363;36364;36365;36366;36367;36368;36369;36370;36371;36372;36373;36374;36375;36376;36377;36378;36379;36380;36381 36373 20 DGGAQHFADCITAIR Unmodified 1630.7522 0.75218852 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 32.202 30.829 2;3 7.7701E-16 14518 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 200.98 196.97 2878400000 259700000 229730000 214980000 36329000 43311000 41099000 100600000 159570000 169850000 10635000 0 4798200 210190000 191160000 179640000 5704800 5457700 4865700 284770000 268280000 256970000 63413000 72741000 64629000 3119 1628 3028 59489;59490;59491;59492;59493;59494;59495;59496;59497;59498;59499;59500;59501;59502;59503;59504;59505;59506;59507;59508;59509;59510;59511;59512;59513;59514;59515;59516;59517;59518;59519;59520;59521;59522;59523;59524;59525;59526;59527;59528 36382;36383;36384;36385;36386;36387;36388;36389;36390;36391;36392;36393;36394;36395;36396;36397;36398;36399;36400;36401;36402;36403;36404;36405;36406;36407;36408;36409;36410;36411;36412;36413;36414 36396 32 DGGDRLENLEK Unmodified 1244.5997 0.59969384 1129 P16689 phnM Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 15.86 16.729 2 0.00095963 5834 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.298 63.979 13462000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5296800 2802800 5362500 0 0 0 3120 1129 3029 59529;59530;59531 36415;36416 36415 2 DGGFAEYIVVK Unmodified 1196.6077 0.60773933 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 43.675 41.891 2 0.04749 17009 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 46.462 39.242 300080000 95745000 86749000 73097000 0 0 0 0 0 0 2447200 2877900 2802600 18343000 18022000 0 0 0 0 0 0 0 0 0 0 3121 553 3030 59532;59533;59534;59535;59536;59537;59538;59539 36417;36418;36419 36417 1 DGGTHLAGFR Unmodified 1029.4992 0.49919194 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.136 16.697 2 9.3706E-05 5854 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.06 119.69 593090000 61635000 71519000 0 0 0 0 60245000 59010000 60091000 4145900 2926900 0 0 55320000 0 2125800 0 0 71085000 68696000 76291000 0 0 0 3122 883 3031 59540;59541;59542;59543;59544;59545;59546;59547;59548;59549;59550;59551 36420;36421;36422;36423;36424 36424 5 DGGVIASGYNEELDEWR Unmodified 1908.849 0.84898525 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.119 43.491 2 2.359E-10 20543 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 139.89 136.56 79217000 0 0 0 0 0 0 8648000 9804900 6011900 0 821530 730200 8641300 4896600 7980500 0 0 0 10787000 11177000 9717400 0 0 0 3123 1230 3032 59552;59553;59554;59555;59556;59557;59558;59559;59560;59561;59562 36425 36425 1 DGGYLYTTTDIACAK Unmodified 1647.745 0.74503745 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 36.249 34.846 2 8.0791E-12 16578 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.55 135.6 260640000 36787000 40869000 33112000 7159100 0 0 0 0 0 0 0 0 48063000 50517000 44137000 0 0 0 0 0 0 0 0 0 3124 1073 3033 59563;59564;59565;59566;59567;59568;59569;59570;59571;59572;59573 36426;36427;36428;36429;36430;36431;36432;36433;36434;36435 36429 10 DGHALSDEEIR Unmodified 1240.5684 0.56839372 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 14.667 15.373 2;3 2.5282E-20 4821 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 244.98 238.31 2101900000 37793000 39991000 37650000 501720 0 372020 318720000 330870000 307500000 2087800 1115300 1193400 176010000 164800000 156420000 0 0 0 165960000 187410000 173470000 0 0 0 3125 167 3034 59574;59575;59576;59577;59578;59579;59580;59581;59582;59583;59584;59585;59586;59587;59588;59589;59590;59591;59592;59593;59594;59595;59596;59597;59598;59599;59600;59601;59602 36436;36437;36438;36439;36440;36441;36442;36443;36444;36445;36446;36447;36448;36449;36450;36451;36452;36453;36454;36455;36456 36451 21 DGHLIVNGK Unmodified 951.51378 0.51377937 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.428 13.16 2 2.0702E-08 3713 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 199.07 180.29 4028400000 246560000 229250000 240340000 0 2067300 3212200 501600000 477220000 441780000 1921900 3823800 3247400 266540000 309490000 242970000 0 0 0 337070000 377630000 342800000 852970 0 0 3126 504 3035 59603;59604;59605;59606;59607;59608;59609;59610;59611;59612;59613;59614;59615;59616;59617;59618;59619;59620 36457;36458;36459;36460;36461;36462;36463;36464;36465;36466;36467;36468 36458 11 DGHPLFAGFVK Unmodified 1186.6135 0.61349341 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 3 3 3 2 2 2 3 3 3 1 1 1 3 3 3 2 2 2 35.648 34.022 2;3 4.742E-05 15938 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 152.34 132.35 6650900000 351690000 341440000 295460000 4025900 4264800 4005400 532220000 535190000 556480000 6573000 6061600 6023000 566000000 533460000 491220000 4986400 3479600 2504200 814320000 779000000 798630000 4227700 4496200 5137000 3127 337 3036 59621;59622;59623;59624;59625;59626;59627;59628;59629;59630;59631;59632;59633;59634;59635;59636;59637;59638;59639;59640;59641;59642;59643;59644;59645;59646;59647;59648;59649;59650;59651;59652;59653;59654;59655;59656;59657;59658;59659;59660;59661;59662;59663;59664;59665;59666;59667;59668;59669;59670;59671;59672;59673;59674;59675 36469;36470;36471;36472;36473;36474;36475;36476;36477;36478;36479;36480;36481;36482;36483;36484;36485;36486;36487;36488;36489;36490;36491;36492;36493;36494;36495;36496;36497 36484 28 DGHPWFK Unmodified 885.41334 0.41333704 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 18.972 19.338 2 0.020298 7300 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.847 73.031 407530000 53963000 55803000 63371000 2663300 2606400 2545100 26838000 27699000 26074000 2167100 2201100 2077900 15531000 13759000 11872000 14046000 4856500 6366600 25892000 22742000 22492000 0 0 1966700 3128 841 3037 59676;59677;59678;59679;59680;59681;59682;59683;59684;59685;59686;59687;59688;59689;59690;59691;59692;59693;59694;59695;59696;59697;59698 36498;36499;36500;36501;36502;36503;36504;36505;36506 36503 7 DGIASAILPGR Unmodified 1068.5928 0.59275797 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.055 36.212 2 0.00025046 16997 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 98.033 88.122 228020000 0 0 0 0 565340 500330 18557000 18048000 18150000 647300 0 0 22709000 18425000 17423000 0 0 0 39715000 38082000 35196000 0 0 0 3129 177 3038 59699;59700;59701;59702;59703;59704;59705;59706;59707;59708;59709;59710 36507;36508;36509;36510;36511 36510 2 DGIDAAAAAGVTCVIQPGGSIR Unmodified 2098.0477 0.047701834 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 46.097 44.77 2 0.011496 21830 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 90.725 88.821 21510000 8592200 5937500 5188500 0 0 0 0 0 0 0 0 0 0 0 1791400 0 0 0 0 0 0 0 0 0 3130 1111 3039 59711;59712;59713;59714 36512 36512 0 DGIFVEDK Unmodified 921.44436 0.4443624 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 26.756 25.432 2 0.024892 11428 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 67.169 44.15 31791000 0 0 0 1065200 1038600 1110300 0 0 0 1672800 2618600 0 9247600 7190500 7847700 0 0 0 0 0 0 0 0 0 3131 1321 3040 59715;59716;59717;59718;59719;59720;59721;59722;59723;59724 36513;36514;36515;36516;36517 36514 5 DGIFVEDKESPYVNLIVTR Unmodified 2193.1317 0.13174904 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 48.969 47.522 2;3 1.3175E-17 19267 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 147.1 145.96 142200000 0 0 0 9727000 11753000 15417000 0 1881400 0 40067000 21364000 19005000 0 0 0 0 4060200 0 0 0 0 5939900 5565600 7423300 3132 1321 3041 59725;59726;59727;59728;59729;59730;59731;59732;59733;59734;59735;59736 36518;36519;36520;36521;36522;36523;36524;36525;36526;36527 36518 10 DGIISNYQAVVPSTWNSGPR Unmodified 2160.06 0.05998108 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 48.73 47.236 2;3 6.088E-56 23391 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 275.23 272.1 538090000 0 0 0 0 0 0 49807000 41881000 41580000 9501000 13716000 16992000 55254000 47513000 44919000 0 0 0 64728000 58710000 57895000 13072000 10729000 11797000 3133 723 3042 59737;59738;59739;59740;59741;59742;59743;59744;59745;59746;59747;59748;59749;59750;59751;59752;59753;59754;59755;59756;59757;59758;59759;59760;59761;59762;59763;59764;59765;59766 36528;36529;36530;36531;36532;36533;36534;36535;36536;36537;36538;36539;36540;36541;36542;36543;36544;36545;36546;36547;36548;36549;36550;36551;36552;36553 36534 24 DGIPAVVER Unmodified 954.51345 0.51344502 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 26.377 24.942 2 0.10497 11622 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 42.075 31.661 368480000 0 0 0 2904800 2703100 2505200 130690000 118270000 111410000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3134 1620 3043 59767;59768;59769;59770;59771;59772 36554;36555 36554 2 DGIPLSVIEAAQQSPVYK Unmodified 1914.0098 0.0098429899 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 2 1 3 3 3 3 4 3 2 2 2 49.816 48.505 2;3 3.8262E-17 19912 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 166.62 159.25 488370000 23309000 28363000 28655000 0 0 0 29835000 32571000 28216000 0 3595100 0 34263000 31612000 28638000 0 0 0 54964000 55635000 52068000 21244000 19503000 15899000 3135 1067 3044 59773;59774;59775;59776;59777;59778;59779;59780;59781;59782;59783;59784;59785;59786;59787;59788;59789;59790;59791;59792;59793;59794;59795;59796;59797;59798;59799;59800;59801;59802;59803;59804;59805;59806;59807;59808;59809;59810;59811;59812 36556;36557;36558;36559;36560;36561;36562;36563;36564;36565;36566;36567;36568;36569;36570;36571;36572;36573 36564 17 DGIPVLLETEAR Unmodified 1311.7034 0.70343063 620 P0AAZ7 ycaR UPF0434 protein YcaR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.319 43.737 2 2.7016E-08 21292 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.19 125.84 1479800000 91516000 87630000 88695000 1046900 649690 832890 171470000 157770000 167830000 1704700 1560200 1411500 92365000 91743000 89889000 0 0 0 150190000 151420000 132050000 0 0 0 3136 620 3045 59813;59814;59815;59816;59817;59818;59819;59820;59821;59822;59823;59824;59825;59826;59827;59828;59829;59830 36574;36575;36576;36577;36578;36579;36580;36581;36582;36583;36584;36585 36577 12 DGISALQMDIK Unmodified 1189.6013 0.60127375 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 40.086 38.232 2 3.1773E-05 18870 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.88 118.21 2296000000 114430000 114040000 107500000 16035000 17527000 14799000 182960000 177570000 176640000 10138000 11487000 9856600 219330000 174260000 196770000 0 0 0 250400000 249620000 228730000 9045500 8775200 6077200 3137 107 3046 59831;59832;59833;59834;59835;59836;59837;59838;59839;59840;59841;59842;59843;59844;59845;59846;59847;59848;59849;59850;59851;59852;59853 36586;36587;36588;36589;36590;36591;36592;36593 36587 8 DGISYTFSIVPNALGK Unmodified 1680.8723 0.87228688 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 2 2 2 1 1 1 1 2 2 2 2 1 1 53.685 52.239 2;3 1.9709E-08 25519 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.66 122.33 4938300000 233350000 236190000 26694000 0 0 4098900 723390000 687630000 714730000 3471300 4535000 3539200 60479000 0 744700000 0 0 0 429340000 461940000 597190000 0 4655900 2391400 3138 212 3047 59854;59855;59856;59857;59858;59859;59860;59861;59862;59863;59864;59865;59866;59867;59868;59869;59870;59871;59872;59873;59874;59875;59876;59877;59878;59879 36594;36595;36596;36597;36598;36599;36600;36601;36602;36603;36604;36605;36606;36607;36608 36602 15 DGISYTFSIVPNALGKDDEVR Unmodified 2295.1383 0.13829098 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 49.482 48.201 2;3 1.218E-62 23752 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 283.34 270.21 1476400000 63181000 5965700 46789000 11483000 12387000 12921000 212810000 205440000 181470000 9733400 8908900 10583000 125170000 113400000 105360000 9217600 9886400 7536600 100950000 98677000 93732000 8732700 11469000 10592000 3139 212 3048 59880;59881;59882;59883;59884;59885;59886;59887;59888;59889;59890;59891;59892;59893;59894;59895;59896;59897;59898;59899;59900;59901;59902;59903;59904;59905;59906;59907;59908;59909;59910;59911;59912;59913;59914;59915 36609;36610;36611;36612;36613;36614;36615;36616;36617;36618;36619;36620;36621;36622;36623 36612 15 DGISYTFSIVPNALGKDDEVRK Unmodified 2423.2333 0.233254 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 2 1 1 1 1 2 2 1 1 1 1 2 42.671 41.207 3;4 0.005499 14569 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 44.258 41.572 219610000 0 0 0 12052000 14336000 12642000 19506000 17097000 14733000 13221000 0 7256000 6433000 6008700 5491600 19837000 18994000 19873000 8863100 7110200 6660700 9496800 0 0 3140 212 3049 59916;59917;59918;59919;59920;59921;59922;59923;59924;59925;59926;59927;59928;59929;59930;59931;59932;59933;59934;59935;59936;59937;59938;59939;59940 36624;36625;36626;36627;36628;36629;36630 36625 7 DGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK Unmodified 3949.7589 0.7588562 779 P0ADB1 osmE Osmotically-inducible lipoprotein E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 2 2 1 1 42.693 40.523 3;4 2.2836E-17 16170 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 119.99 119.99 145560000 0 0 0 16734000 20197000 16273000 0 0 0 32713000 25841000 26603000 0 0 0 0 0 0 0 0 0 0 4080200 3116600 3141 779 3050 59941;59942;59943;59944;59945;59946;59947;59948;59949;59950;59951;59952;59953 36631;36632;36633;36634;36635;36636;36637;36638 36633 8 DGKEDHFHYEGGIK Unmodified 1630.7376 0.73758431 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 13.136 13.732 2;3;4 2.1241E-06 4179 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.51 102.39 304980000 0 0 0 3872700 6678200 4356400 0 0 0 11256000 8991900 10142000 0 0 0 0 0 0 0 249130000 0 3826900 3126800 3592400 3142 883 3051 59954;59955;59956;59957;59958;59959;59960;59961;59962;59963;59964;59965 36639;36640;36641;36642;36643;36644;36645 36645 7 DGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSK Unmodified 4300.1872 0.18717879 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 54.212 52.855 3;4;5 6.0769E-93 19367 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 293.34 292.17 3225100000 0 0 0 731880000 742670000 779950000 0 0 0 0 0 14400000 0 0 0 0 0 0 0 0 0 285130000 348980000 322130000 3143 133 3052 59966;59967;59968;59969;59970;59971;59972;59973;59974;59975;59976;59977;59978;59979;59980;59981;59982;59983;59984 36646;36647;36648;36649;36650;36651;36652;36653;36654;36655;36656;36657;36658;36659;36660;36661 36657 16 DGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSK Oxidation (M) 4316.1821 0.18209341 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 1 By MS/MS By MS/MS By MS/MS 1 1 2 53.923 52.608 3;4 2.4926E-27 19151 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 135.22 134.23 93852000 0 0 0 25397000 30575000 37880000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3144 133 3052 59985;59986;59987;59988 36662;36663;36664;36665 36664 40 4 DGKPFELEADGLLAICIQHEMDHLVGK Unmodified 3034.4892 0.48922746 255 P0A6K3 def Peptide deformylase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.109 52.669 5 0.072458 25773 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 33.562 31.608 281210000 27828000 31710000 22400000 0 0 0 24788000 23092000 24606000 0 0 0 24517000 19196000 22580000 0 0 0 26495000 19108000 14894000 0 0 0 3145 255 3053 59989;59990;59991;59992;59993;59994;59995;59996;59997;59998;59999;60000 36666;36667 36667 2 DGKPHLLK Unmodified 906.5287 0.52870115 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 11.671 11.892 2 0.023435 2505 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 73.26 42.648 96213000 0 0 0 0 0 0 0 0 0 6002800 4469000 4075100 0 0 0 20590000 2030700 5953800 0 3702100 0 12580000 19309000 17502000 3146 1448 3054 60001;60002;60003;60004;60005;60006;60007;60008;60009;60010 36668 36668 1 DGLALSSR Unmodified 817.42938 0.42938104 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.925 19.49 2 0.00018486 7324 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 153.73 90.579 730910000 86978000 68783000 71545000 0 0 0 74021000 70864000 70456000 0 0 0 48181000 39024000 39254000 0 0 0 57671000 56420000 47710000 0 0 0 3147 1375 3055 60011;60012;60013;60014;60015;60016;60017;60018;60019;60020;60021;60022 36669;36670;36671;36672;36673;36674;36675;36676;36677 36673 9 DGLDGFITITGGK Unmodified 1292.6612 0.66123147 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 48.844 47.473 2 3.1048E-05 22266 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 103.87 101.83 263750000 0 0 0 0 434310 0 47505000 42171000 41465000 0 0 0 28863000 30367000 23594000 0 0 0 14034000 17641000 17674000 0 0 0 3148 506 3056 60023;60024;60025;60026;60027;60028;60029;60030;60031;60032 36678;36679;36680;36681;36682;36683 36682 6 DGLDSYR Unmodified 824.36645 0.36644643 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.468 17.729 2 0.02496 5125 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 72.138 55.212 66629000 13347000 15126000 13796000 668950 657690 0 0 0 0 2711000 2419800 2395700 0 0 0 3813000 2599700 2595600 0 0 0 2392800 1979000 2126400 3149 1787 3057 60033;60034;60035;60036;60037;60038;60039;60040;60041;60042;60043;60044;60045;60046 36684;36685;36686 36684 3 DGLEDYIR Unmodified 979.46108 0.4610751 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 37.629 36.005 2 0.0010471 17438 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 112.17 108.98 8708100000 176610000 161070000 142460000 0 1782400 2143100 980940000 959900000 920000000 7456900 5586800 5755700 843120000 793720000 799150000 9700700 5570300 5957400 938440000 1018100000 914070000 6268900 4856200 5438200 3150 239 3058 60047;60048;60049;60050;60051;60052;60053;60054;60055;60056;60057;60058;60059;60060;60061;60062;60063;60064;60065;60066;60067;60068;60069;60070;60071;60072;60073;60074;60075;60076;60077 36687;36688;36689;36690;36691;36692;36693;36694;36695;36696;36697;36698;36699;36700;36701;36702;36703;36704;36705;36706 36690 20 DGLFCAR Unmodified 837.38032 0.38032236 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 3 2 3 3 3 3 3 2 2 5 5 4 3 2 2 4 3 3 26.329 25.289 1;2 0.00053912 8806 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 160.17 160.17 31734000000 214530000 231400000 194150000 15645000 18373000 14152000 205500000 208390000 198630000 2072200000 1841200000 1920100000 164770000 154010000 124500000 5765700000 4358800000 4883100000 229370000 224490000 226000000 2788800000 2679100000 3001000000 3151 458 3059 60078;60079;60080;60081;60082;60083;60084;60085;60086;60087;60088;60089;60090;60091;60092;60093;60094;60095;60096;60097;60098;60099;60100;60101;60102;60103;60104;60105;60106;60107;60108;60109;60110;60111;60112;60113;60114;60115;60116;60117;60118;60119;60120;60121;60122;60123;60124;60125;60126;60127;60128;60129;60130;60131;60132;60133;60134;60135;60136;60137;60138;60139;60140;60141;60142;60143;60144;60145 36707;36708;36709;36710;36711;36712;36713;36714;36715;36716;36717;36718;36719;36720;36721;36722;36723;36724;36725;36726;36727;36728;36729;36730;36731;36732;36733;36734;36735;36736;36737;36738;36739;36740;36741;36742;36743;36744;36745;36746;36747;36748;36749;36750;36751;36752;36753;36754;36755;36756;36757 36723 50 DGLKPVHR Unmodified 920.5192 0.5191991 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.362 11.012 2 0.0054416 2103 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.539 81.55 942260000 58666000 57593000 58141000 0 0 170120 92720000 94729000 93222000 22820000 17183000 13316000 89301000 82779000 0 0 0 0 89025000 82031000 83458000 0 443030 6661000 3152 882 3060 60146;60147;60148;60149;60150;60151;60152;60153;60154;60155;60156;60157;60158;60159;60160;60161;60162 36758;36759;36760;36761;36762;36763;36764;36765;36766;36767 36758 10 DGLLAIAEK Unmodified 928.52295 0.52294707 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 35.55 33.952 2 0.0049915 16341 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 76.064 43.594 220380000 55155000 51052000 38925000 0 0 0 15164000 14163000 17074000 0 0 0 0 0 3673300 0 0 0 8775400 7399800 8998900 0 0 0 3153 1194 3061 60163;60164;60165;60166;60167;60168;60169;60170;60171;60172 36768;36769;36770;36771;36772;36773;36774;36775 36769 8 DGLPWSVK Unmodified 900.47052 0.47051757 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.842 35.234 2 0.0026738 17034 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.523 84.852 672070000 27747000 26174000 22607000 11306000 11681000 11129000 46085000 43835000 49659000 20999000 17980000 18479000 33728000 32461000 34650000 7120800 4852800 5530400 68355000 65462000 59839000 16992000 16856000 18547000 3154 1383 3062 60173;60174;60175;60176;60177;60178;60179;60180;60181;60182;60183;60184;60185;60186;60187;60188;60189;60190;60191;60192;60193;60194;60195;60196 36776;36777;36778;36779;36780;36781;36782;36783;36784;36785;36786;36787;36788;36789;36790;36791;36792;36793;36794;36795;36796 36791 21 DGLVDVDEK Unmodified 988.47131 0.47130543 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.73 22.201 2 0.022138 9017 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 62.338 44.952 170410000 19271000 20757000 23066000 0 0 0 15924000 11194000 12851000 0 0 0 11823000 7556700 9659900 0 0 0 11460000 12855000 13989000 0 0 0 3155 1387 3063 60197;60198;60199;60200;60201;60202;60203;60204;60205;60206;60207;60208 36797;36798;36799 36799 3 DGLYVCLR Unmodified 994.4906 0.49060109 1330 P29208 menC o-succinylbenzoate synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 34.786 33.311 2 0.028867 15903 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 74.415 52.869 44997000 0 0 0 0 0 0 0 7790400 9754400 0 0 0 0 6246400 4217700 0 0 0 0 9299700 7688400 0 0 0 3156 1330 3064 60209;60210;60211;60212;60213;60214 36800;36801;36802;36803 36800 0 DGLYYLTEQQAQAILDLR Unmodified 2109.0742 0.074234161 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 2 55.165 53.692 2;3 2.2874E-17 26442 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 140.81 136.86 675180000 20209000 41942000 43348000 0 0 0 31599000 55074000 19732000 5230000 18695000 15067000 62543000 62844000 70815000 0 0 0 75150000 73959000 69836000 0 2716900 6422900 3157 882 3065 60215;60216;60217;60218;60219;60220;60221;60222;60223;60224;60225;60226;60227;60228;60229;60230;60231;60232;60233;60234;60235;60236;60237;60238;60239;60240;60241;60242;60243;60244 36804;36805;36806;36807;36808;36809;36810;36811;36812 36804 4 DGMAEIGTFHGGDLR Unmodified 1574.7147 0.71474038 1268 P25718 malS Alpha-amylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 31.712 30.412 3 0.0068737 14308 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 51.695 40.59 42069000 0 0 0 0 0 0 0 0 4773000 0 0 0 6904100 4209300 4618200 0 0 0 5998200 8420400 7146000 0 0 0 3158 1268 3066 60245;60246;60247;60248;60249;60250;60251 36813;36814 36813 2 DGMLFGR Unmodified 794.37451 0.3745087 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 31.043 29.679 2 0.002549 14332 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.69 93.921 165370000 14221000 13437000 9541300 0 0 0 14795000 12633000 15517000 0 0 0 8637100 9720600 8768700 0 0 0 19719000 20622000 17755000 0 0 0 3159 849 3067 60252;60253;60254;60255;60256;60257;60258;60259;60260;60261;60262;60263;60264 36815;36816;36817;36818;36819;36820;36821;36822;36823 36815 5 DGMLMMIDDNR Unmodified 1309.5465 0.54647776 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.131 42.616 2 7.9009E-05 19865 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 123.86 103.16 429610000 32298000 32312000 27821000 0 0 0 23479000 22526000 27266000 0 0 0 37263000 35523000 35987000 0 0 0 51440000 50690000 53005000 0 0 0 3160 1169 3068 60265;60266;60267;60268;60269;60270;60271;60272;60273;60274;60275;60276 36824;36825;36826;36827;36828;36829;36830;36831;36832;36833 36833 9 DGMLMMIDDNRIDLQPGEVIK Unmodified 2402.1644 0.16438785 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.84 50.703 3 0.013446 18299 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 42.64 38.838 125930000 9265000 0 6383600 2770700 2623800 2383100 0 7834800 7090300 0 0 2426600 5277600 6396400 8188000 2345500 2881700 0 16474000 19227000 15821000 1981300 3365600 3196900 3161 1169 3069 60277;60278;60279;60280;60281;60282;60283;60284;60285;60286;60287;60288;60289;60290;60291;60292;60293;60294;60295 36834 36834 1 DGMNLVAK Unmodified 846.42694 0.4269382 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS 1 1 20.643 21.118 2 0.011917 8307 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.972 57.308 146690000 80304000 66390000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3162 1376 3070 60296;60297 36835;36836 36836 2 DGMTICR Unmodified 851.36296 0.36295773 1605 P52108 rstA Transcriptional regulatory protein RstA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.945 16.761 2 0.0012423 5806 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.47 129.62 178680000 12445000 10816000 11491000 0 0 0 14330000 16771000 18339000 0 0 0 16165000 11063000 12166000 0 0 0 15387000 17785000 21924000 0 0 0 3163 1605 3071 60298;60299;60300;60301;60302;60303;60304;60305;60306;60307;60308;60309 36837;36838;36839;36840;36841 36838 5 DGNKLDLYGK Unmodified 1121.5717 0.57168818 144 P06996;P77519;P76335 ompC;yddL;yedS Outer membrane protein C;Putative uncharacterized protein YddL;Putative outer membrane protein YedS no no 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 2 2 18.133 18.483 2;3 2.5035E-12 5758 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 179.09 143.47 419830000 15604000 18854000 12839000 10472000 12243000 15221000 15150000 12336000 12319000 32461000 55646000 35846000 12417000 12406000 11761000 6026800 4232900 3380400 15120000 14938000 11607000 26195000 23620000 29133000 3164 144 3072 60310;60311;60312;60313;60314;60315;60316;60317;60318;60319;60320;60321;60322;60323;60324;60325;60326;60327;60328;60329;60330;60331;60332;60333;60334;60335;60336;60337;60338;60339 36842;36843;36844;36845;36846;36847;36848 36843 7 DGNKLDVYGK Unmodified 1107.556 0.55603812 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 1 2 1 1 2 2 2 2 2 2 14.999 15.443 2;3 4.3526E-05 4276 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 152.37 68.723 190590000 0 0 0 0 0 0 6281200 8019200 3518400 24099000 20696000 19642000 5024900 5012400 2834400 3971500 2922300 2125500 15207000 11393000 10748000 15082000 17284000 16732000 3165 75 3073 60340;60341;60342;60343;60344;60345;60346;60347;60348;60349;60350;60351;60352;60353;60354;60355;60356;60357;60358;60359;60360;60361;60362;60363;60364;60365;60366;60367;60368;60369;60370;60371 36849;36850;36851;36852;36853;36854;36855;36856;36857;36858;36859;36860;36861;36862;36863 36850 15 DGNLNLTGQAPYK Unmodified 1389.6888 0.6888432 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.234 26.69 2 2.2435E-05 12348 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 125.74 114.25 143450000 0 0 0 2746300 2801100 2490600 20128000 21038000 19328000 10455000 0 7718700 0 0 0 0 0 0 22927000 0 19266000 4872200 5433200 4251200 3166 1304 3074 60372;60373;60374;60375;60376;60377;60378;60379;60380;60381;60382;60383;60384 36864;36865;36866;36867 36867 4 DGNPNVTADITR Unmodified 1271.6106 0.61059288 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.857 21.904 2 8.8751E-07 8998 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 152.07 147.46 1025100000 134570000 111850000 101620000 0 0 0 97600000 105350000 102010000 0 0 0 54018000 44174000 45363000 0 0 0 80347000 80897000 67268000 0 0 0 3167 43 3075 60385;60386;60387;60388;60389;60390;60391;60392;60393;60394;60395;60396 36868;36869;36870;36871;36872;36873;36874;36875;36876 36870 9 DGNSFSAR Unmodified 852.37259 0.37259444 1017 P0AGG2 tesB Acyl-CoA thioesterase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 12.07 12.896 2 0.038498 3434 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 58.716 49.246 132420000 23807000 15073000 14011000 0 0 0 11900000 11235000 11027000 0 0 0 7050100 8797000 6843300 0 0 0 11480000 0 11192000 0 0 0 3168 1017 3076 60397;60398;60399;60400;60401;60402;60403;60404;60405;60406;60407 36877;36878;36879 36879 1 DGNTIEYDGMTMER Unmodified 1630.6603 0.66032154 1356 P31063 yedD Uncharacterized lipoprotein YedD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 33.896 32.32 2 4.6214E-08 15433 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 145.23 145.23 56027000 0 0 0 0 0 0 4022500 4807700 2470600 0 0 2453800 5801300 5511400 4771600 0 0 0 9906200 8418700 7863500 0 0 0 3169 1356 3077 60408;60409;60410;60411;60412;60413;60414;60415;60416;60417 36880;36881;36882;36883;36884 36880 2 DGPDNPANGPRPLYNVEK Unmodified 1951.9388 0.93880331 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.593 22.748 3 9.6941E-07 9820 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 98.227 90.716 286590000 8206500 9409900 6673600 3225300 3577000 5436500 13881000 14616000 11226000 24129000 16030000 18975000 18064000 15884000 15567000 0 4740800 0 19828000 19360000 25607000 12714000 9517300 9925600 3170 1267 3078 60418;60419;60420;60421;60422;60423;60424;60425;60426;60427;60428;60429;60430;60431;60432;60433;60434;60435;60436;60437;60438;60439 36885;36886;36887;36888;36889;36890;36891;36892;36893;36894;36895;36896;36897;36898;36899 36893 15 DGPLDMR Unmodified 802.36434 0.36433794 1619 P60390 rsmH Ribosomal RNA small subunit methyltransferase H yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.199 22.469 2 0.0067291 9305 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.262 88.724 112970000 14378000 11818000 11397000 0 0 0 9027800 8505400 9613200 0 0 0 8120700 6330300 7720200 0 0 0 9136900 8541000 8381500 0 0 0 3171 1619 3079 60440;60441;60442;60443;60444;60445;60446;60447;60448;60449;60450;60451 36900;36901;36902;36903;36904;36905;36906;36907;36908;36909 36908 9 DGPMFVDLDDAR Unmodified 1349.5922 0.59216562 1037 P0C0K3 rdoA Protein RdoA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.443 42.928 2 0.01482 20154 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 72.2 61.914 105400000 11249000 11342000 9456000 0 0 0 9206700 6422200 5533900 0 0 0 8352800 5745100 7636300 0 0 0 10243000 10078000 10135000 0 0 0 3172 1037 3080 60452;60453;60454;60455;60456;60457;60458;60459;60460;60461;60462;60463 36910;36911;36912 36911 2 DGPSAGIAMCTALVSCLTGNPVR Unmodified 2346.113 0.11302098 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By matching By MS/MS 2 2 2 54.32 54.375 2;3 2E-21 21229 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 160.04 154.96 65299000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25223000 19754000 20322000 0 0 0 0 0 0 3173 536 3081 60464;60465;60466;60467;60468;60469 36913;36914 36913 2 DGQDCER Unmodified 878.31884 0.31884431 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 6.1953 6.8655 2 0.00019835 749 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 166.05 166.05 2144100000 273610000 289270000 231300000 51135000 52681000 52333000 28023000 50440000 41925000 3210600 3270800 4066600 122900000 135500000 104730000 1657400 1362300 998600 204100000 187450000 202510000 29725000 33607000 38293000 3174 939 3082 60470;60471;60472;60473;60474;60475;60476;60477;60478;60479;60480;60481;60482;60483;60484;60485;60486;60487;60488;60489;60490;60491;60492;60493;60494;60495;60496;60497 36915;36916;36917;36918;36919;36920;36921;36922;36923;36924;36925;36926;36927;36928;36929;36930;36931;36932;36933;36934;36935;36936;36937;36938;36939;36940;36941 36935 27 DGQDCERWNMLHPLETPR Unmodified 2253.0055 0.0055194435 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 34.049 32.43 3 0.0057879 11167 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 46.131 46.128 15425000 0 0 0 4679500 5395400 5350200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3175 939 3083 60498;60499;60500 36942 36942 1 DGQIQFVLLK Unmodified 1159.6601 0.66010926 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.306 45.916 2 0.00043055 22317 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.56 94.349 2290500000 627440000 572390000 550550000 0 0 0 63495000 48603000 51254000 0 0 0 47417000 41197000 41688000 0 0 0 79252000 84825000 82365000 0 0 0 3176 852 3084 60501;60502;60503;60504;60505;60506;60507;60508;60509;60510;60511;60512 36943;36944;36945;36946;36947;36948;36949;36950;36951;36952;36953;36954;36955;36956 36949 14 DGQIVLNIAPR Unmodified 1194.6721 0.67207093 974 P0AFZ3 sspB Stringent starvation protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.716 36.109 2 0.00011223 17695 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.2 118.12 537230000 41878000 37881000 34443000 0 1785700 2064900 35447000 36443000 31223000 4845200 4762200 4808500 43218000 36698000 44019000 2817100 1975900 2434600 50984000 57980000 53057000 2948200 2865600 2648400 3177 974 3085 60513;60514;60515;60516;60517;60518;60519;60520;60521;60522;60523;60524;60525;60526;60527;60528;60529;60530;60531;60532;60533;60534;60535 36957;36958;36959;36960;36961;36962;36963;36964;36965;36966;36967;36968;36969;36970 36960 13 DGQQLNLDNIGTTPLAEK Unmodified 1925.9694 0.96943474 1151 P18390 yjjA Uncharacterized protein YjjA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.636 40.951 2 2.9687E-55 20347 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 280.23 278.6 132710000 14435000 10672000 9229500 0 0 0 14364000 10255000 9682600 0 0 0 7675100 8619700 8777900 0 0 0 13177000 13463000 12355000 0 0 0 3178 1151 3086 60536;60537;60538;60539;60540;60541;60542;60543;60544;60545;60546;60547 36971;36972;36973;36974;36975;36976 36971 6 DGQVGAIFNTVTR Unmodified 1376.7048 0.70482762 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.629 37.955 2 4.5863E-06 18897 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.85 121.71 304470000 17110000 17281000 13831000 0 0 0 34587000 30508000 28653000 0 0 0 21773000 22365000 17604000 0 0 0 33043000 33778000 33936000 0 0 0 3179 1421 3087 60548;60549;60550;60551;60552;60553;60554;60555;60556;60557;60558;60559 36977;36978;36979 36977 2 DGQWIATEPLAGLTMDK Unmodified 1844.8978 0.8978497 593 P0AAG8 mglA Galactose/methyl galactoside import ATP-binding protein MglA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.529 52.14 2 5.535E-09 25645 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.95 123.45 63013000 15015000 12132000 14476000 2819600 2388900 2297200 0 2107200 0 0 0 0 2634000 0 2395700 0 0 0 3500700 0 3246800 0 0 0 3180 593 3088 60560;60561;60562;60563;60564;60565;60566;60567;60568;60569;60570 36980;36981 36981 2 DGRWEPEFTITGQAWDLPVVGYR Unmodified 2691.3082 0.30815028 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.735 53.715 3 1.196E-15 20316 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 152.88 150.74 131370000 0 2885100 0 0 0 0 0 0 0 9520900 7097500 7428600 0 0 0 23611000 26794000 24633000 20747000 0 0 4206500 0 4444500 3181 30 3089 60571;60572;60573;60574;60575;60576;60577;60578;60579;60580 36982;36983;36984 36983 3 DGSFTIK Unmodified 766.38612 0.38611924 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.863 20.353 2 0.015892 8074 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 81.297 50.628 303450000 36154000 35700000 30912000 0 0 0 42598000 34222000 37851000 0 0 0 18881000 18291000 15818000 0 0 0 10913000 9492900 12616000 0 0 0 3182 427 3090 60581;60582;60583;60584;60585;60586;60587;60588;60589;60590;60591;60592 36985;36986;36987 36986 3 DGSLKVHQDMELYR Unmodified 1689.8145 0.81445442 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 22.077 21.754 3 6.6885E-06 6445 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 90.707 81.886 25717000 0 0 0 3126600 2482500 4150600 9039300 0 0 0 0 0 0 0 0 0 0 0 0 3107200 1597500 0 1021500 1191900 3183 1587 3091 60593;60594;60595;60596;60597;60598;60599;60600 36988;36989;36990 36990 3 DGSMIGLNK Unmodified 933.45897 0.45896661 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.796 22.267 2 0.00030794 9765 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.16 83.802 810510000 65520000 64929000 66442000 0 0 0 80775000 71060000 62422000 0 0 0 63401000 54334000 52161000 0 0 0 70723000 75384000 83358000 0 0 0 3184 1759 3092 60601;60602;60603;60604;60605;60606;60607;60608;60609;60610;60611;60612 36991;36992;36993;36994;36995;36996;36997;36998;36999 36991 9 DGSMLTAR Unmodified 849.40145 0.40145173 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 16.249 17.086 2 0.00063356 6016 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.68 121.34 94772000 4674400 5021700 3801400 1366400 1133400 1597700 10048000 8485000 9388800 0 0 1169200 6013900 8653000 8068800 0 0 0 9304000 9086300 6959400 0 0 0 3185 1260 3093 60613;60614;60615;60616;60617;60618;60619;60620;60621;60622;60623;60624;60625;60626;60627;60628;60629;60630 37000;37001;37002;37003;37004;37005 37001 5 DGSVDIDTLFR Unmodified 1236.5986 0.59863121 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 2 1 1 49.05 47.688 2 1.0203E-19 23423 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 234.05 234.05 1024600000 43821000 49823000 40906000 0 0 0 249780000 269440000 254810000 0 0 0 12878000 13532000 13309000 0 0 0 25232000 24493000 25105000 0 1513200 0 3186 1265 3094 60631;60632;60633;60634;60635;60636;60637;60638;60639;60640;60641;60642;60643;60644 37006;37007;37008;37009;37010;37011;37012;37013;37014;37015;37016;37017 37008 12 DGSVVVLGYTDR Unmodified 1279.6408 0.64083038 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 35.697 34.243 2 8.4545E-14 11683 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 156.83 129.08 2298100000 126140000 112940000 98773000 0 0 43340000 82846000 62198000 81504000 104200000 94793000 71925000 174180000 188400000 181410000 31839000 20987000 21866000 266410000 257760000 276540000 0 0 0 3187 480 3095 60645;60646;60647;60648;60649;60650;60651;60652;60653;60654;60655;60656;60657;60658;60659;60660;60661;60662;60663;60664;60665;60666;60667;60668;60669;60670;60671;60672;60673;60674 37018;37019;37020;37021;37022;37023;37024;37025;37026;37027;37028;37029;37030;37031;37032;37033;37034;37035;37036;37037;37038;37039 37030 22 DGSYNIDQGVGVR Unmodified 1378.6477 0.64770667 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.982 25.746 2 3.1475E-31 11263 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 254.83 250.53 753700000 55552000 62732000 49417000 0 0 0 74339000 67598000 69247000 911390 0 0 49554000 49822000 46938000 0 0 0 75059000 77768000 74764000 0 0 0 3188 1019 3096 60675;60676;60677;60678;60679;60680;60681;60682;60683;60684;60685;60686;60687 37040;37041;37042;37043;37044;37045;37046;37047;37048;37049;37050;37051 37049 12 DGTIHQFSAVEQDDQR Unmodified 1844.8289 0.82891851 1637 P61316 lolA Outer-membrane lipoprotein carrier protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 2 3 2 2 2 2 2 1 2 21.624 21.67 2;3 4.2812E-50 9049 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 338.77 313.34 1297400000 103840000 103730000 88369000 0 562650 486580 111000000 111410000 119760000 0 0 0 132250000 127100000 108370000 0 0 0 130730000 23844000 135970000 0 0 0 3189 1637 3097 60688;60689;60690;60691;60692;60693;60694;60695;60696;60697;60698;60699;60700;60701;60702;60703;60704;60705;60706;60707;60708;60709;60710;60711;60712;60713;60714 37052;37053;37054;37055;37056;37057;37058;37059;37060;37061;37062;37063;37064;37065;37066;37067;37068;37069;37070;37071;37072;37073 37055 22 DGTIVSVQGFAR Unmodified 1248.6463 0.64625011 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.49 34.579 2 4.7958E-05 16679 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 125.56 120.78 409140000 0 0 0 19753000 17288000 16748000 16828000 15243000 13017000 24719000 27809000 20603000 0 8851300 0 0 0 0 36177000 34022000 28503000 41272000 44979000 43333000 3190 215 3098 60715;60716;60717;60718;60719;60720;60721;60722;60723;60724;60725;60726;60727;60728;60729;60730 37074;37075;37076;37077;37078;37079;37080;37081 37079 5 DGTLISEPPSDFQVDR Unmodified 1774.8374 0.83735793 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.919 39.254 2 1.7557E-15 19257 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 180.2 173.96 166940000 25090000 20551000 16616000 0 0 0 8894500 12286000 10750000 0 0 0 11427000 9600200 11789000 0 0 0 14383000 13789000 11759000 0 0 0 3191 139 3099 60731;60732;60733;60734;60735;60736;60737;60738;60739;60740;60741;60742 37082;37083;37084;37085;37086;37087;37088;37089 37085 8 DGTLISEPPSDFQVDRFDK Unmodified 2165.0277 0.027677899 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 41.27 39.537 3 0.0012977 19287 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 45.094 41.996 23364000 0 4034700 4259600 0 2575000 1517000 4367900 3933500 0 0 0 0 0 2676500 0 0 0 0 0 0 0 0 0 0 3192 139 3100 60743;60744;60745;60746;60747;60748;60749 37090 37090 1 DGTLQALSEK Unmodified 1060.5401 0.5400537 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.938 22.406 2 0.00020435 9556 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.87 95.294 3473900000 350830000 431040000 370170000 0 0 0 308670000 332200000 366910000 0 0 0 169870000 171900000 208450000 0 0 0 255550000 260890000 247420000 0 0 0 3193 874 3101 60750;60751;60752;60753;60754;60755;60756;60757;60758;60759;60760;60761 37091;37092;37093;37094 37091 3 DGTMPEK Unmodified 776.33745 0.33745449 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 10.866 11.566 2 0.0046873 2861 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.77 102.77 202810000 70198000 68353000 61367000 0 0 0 2891000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3194 1525 3102 60762;60763;60764;60765 37095;37096;37097 37095 3 DGTMTLVGAPATPHK Unmodified 1494.7501 0.75006325 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 24.132 23.428 2 4.629E-15 10260 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 190.53 174.94 506060000 167540000 173980000 164540000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3195 1762 3103 60766;60767;60768 37098;37099;37100 37098 3 DGTVYSITR Unmodified 1010.5033 0.50327426 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 22.976 22.119 2 0.060289 7672 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 51.066 46.71 13303000 0 0 0 0 0 0 0 0 0 4462200 3790300 3792300 0 0 0 0 0 1258300 0 0 0 0 0 0 3196 1940 3104 60769;60770;60771;60772 37101 37101 1 DGTYETIYNK Unmodified 1202.5455 0.54553301 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 2 2 2 2 1 2 1 1 21.806 21.86 2 0.00015316 9186 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.58 114.07 2537000000 383120000 303610000 270750000 0 0 0 206980000 187840000 202060000 0 0 0 159930000 159590000 131090000 0 0 0 201490000 166930000 163590000 0 0 0 3197 1349 3105 60773;60774;60775;60776;60777;60778;60779;60780;60781;60782;60783;60784;60785;60786;60787;60788;60789;60790 37102;37103;37104;37105;37106 37102 5 DGTYSVIPR Unmodified 1006.5084 0.50835964 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS 1 27.394 25.744 2 0.017 12002 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 65.88 54.511 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3198 180 3106 60791 37107 37107 1 DGVDAGGSYVFVQR Unmodified 1468.6947 0.69465686 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 1 1 1 1 1 1 35.159 33.671 2 5.2463E-11 16147 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.37 162.84 571360000 36101000 25673000 27234000 0 0 0 71142000 59264000 61231000 0 0 0 52785000 45567000 48001000 0 0 0 50445000 48684000 45234000 0 0 0 3199 1868 3107 60792;60793;60794;60795;60796;60797;60798;60799;60800;60801;60802;60803;60804;60805 37108;37109;37110;37111;37112;37113;37114;37115;37116;37117;37118 37112 10 DGVEKDK Unmodified 789.38685 0.38684752 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 9.7148 10.299 2 0.0035395 1557 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 119.17 37.39 1611500000 255650000 236380000 201750000 0 0 0 10609000 0 2897400 4051700 3675600 3561100 96115000 87935000 123220000 8326000 7659500 14806000 197990000 160890000 184910000 5446600 0 5654900 3200 463 3108 60806;60807;60808;60809;60810;60811;60812;60813;60814;60815;60816;60817;60818;60819;60820;60821;60822;60823;60824;60825;60826;60827;60828 37119;37120;37121;37122;37123;37124;37125;37126;37127;37128 37119 10 DGVEKDKR Unmodified 945.48796 0.48795855 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 9.0211 9.1846 1;2 3.5602E-06 1462 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 196.95 177.31 1452600000 0 0 0 0 0 0 247800 0 0 83814000 65305000 73840000 0 0 0 370180000 224230000 281730000 0 0 0 133860000 116900000 102460000 3201 463 3109 60829;60830;60831;60832;60833;60834;60835;60836;60837;60838;60839;60840;60841;60842;60843;60844;60845;60846;60847 37129;37130;37131;37132;37133;37134;37135;37136;37137;37138;37139;37140 37135 12 DGVIADFFVTEK Unmodified 1339.666 0.66598249 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.425 51.117 2 9.1073E-05 20399 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 115.78 105.69 844980000 38441000 34824000 0 17961000 21048000 17799000 50881000 43805000 41987000 76250000 70982000 72616000 41538000 37684000 31239000 0 0 0 50862000 56085000 59262000 30956000 24869000 25895000 3202 564 3110 60848;60849;60850;60851;60852;60853;60854;60855;60856;60857;60858;60859;60860;60861;60862;60863;60864;60865;60866;60867 37141;37142;37143;37144;37145;37146;37147;37148;37149;37150;37151;37152;37153;37154;37155;37156 37143 13 DGVIEIQGDKR Unmodified 1228.6412 0.64116473 182 P08245 yciH Uncharacterized protein YciH yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 17.111 17.828 2 9.5517E-06 6395 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 149.72 138.23 91754000 12279000 12314000 11340000 0 0 0 5048900 3762500 0 0 0 0 8539400 5525300 6684700 0 0 0 10554000 7924900 7781300 0 0 0 3203 182 3111 60868;60869;60870;60871;60872;60873;60874;60875;60876;60877;60878 37157;37158;37159;37160;37161;37162 37161 6 DGVSVAR Unmodified 702.36605 0.3660525 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 11.967 12.62 2 0.0022268 2837 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 105.2 30.483 11382000000 1533600000 1235200000 1226100000 32881000 30421000 28593000 1076000000 1052800000 943080000 32938000 27329000 28013000 822180000 0 0 18601000 13018000 0 1033400000 1066100000 1105100000 25184000 24948000 26765000 3204 240 3112 60879;60880;60881;60882;60883;60884;60885;60886;60887;60888;60889;60890;60891;60892;60893;60894;60895;60896;60897;60898;60899;60900;60901;60902;60903;60904;60905;60906 37163;37164;37165;37166;37167;37168;37169;37170;37171 37164 9 DGVVQLR Unmodified 785.43955 0.43955179 525 P0A9I8 nirD Nitrite reductase (NADH) small subunit yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 2 1 1 1 19.524 20.028 2 0.0071055 7760 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 92.692 53.856 146250000 0 0 1384300 0 0 0 12961000 15606000 12023000 0 0 0 17145000 16003000 13629000 0 0 0 19629000 21197000 16673000 0 0 0 3205 525 3113 60907;60908;60909;60910;60911;60912;60913;60914;60915;60916;60917 37172;37173;37174;37175 37174 4 DGVVQTMAK Unmodified 947.47462 0.47461667 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.337 17.17 2 0.010777 6068 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 73.665 57.511 84868000 13872000 11002000 11809000 3317100 2811800 3862500 6719900 7717100 7484600 0 0 0 4385800 2426900 0 0 0 0 2811400 3848500 2798500 0 0 0 3206 1528 3114 60918;60919;60920;60921;60922;60923;60924;60925;60926;60927;60928;60929;60930;60931 37176;37177 37176 0 DGVYHCLICDAPLFHSQTK Unmodified 2260.0405 0.040507966 310 P0A746 msrB Peptide methionine sulfoxide reductase MsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 2 2 2 1 3 3 3 1 1 1 3 3 3 2 2 2 38.068 36.368 2;3;4 1.5422E-36 17635 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 266.85 264.22 3548700000 488110000 447920000 397530000 11032000 9663000 11995000 152120000 187630000 163010000 4536000 4485900 2861800 261970000 226220000 216660000 2051800 3619600 2112300 306230000 297010000 319760000 10145000 11189000 10825000 3207 310 3115 60932;60933;60934;60935;60936;60937;60938;60939;60940;60941;60942;60943;60944;60945;60946;60947;60948;60949;60950;60951;60952;60953;60954;60955;60956;60957;60958;60959;60960;60961;60962;60963;60964;60965;60966;60967;60968;60969;60970;60971;60972;60973;60974;60975;60976;60977;60978;60979;60980;60981;60982;60983;60984;60985;60986 37178;37179;37180;37181;37182;37183;37184;37185;37186;37187;37188;37189;37190;37191;37192;37193;37194;37195;37196;37197;37198;37199;37200;37201;37202;37203;37204;37205;37206;37207;37208;37209 37188 32 DGWLFTAEHTQSVLK Unmodified 1730.8628 0.86278482 77 P02943 lamB Maltoporin yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 1 2 1 1 2 2 2 2 2 2 41.864 40.082 2;3 1.6873E-08 16388 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 145.55 143.24 268150000 0 0 0 816950 1671000 2059900 0 0 0 17895000 18453000 15761000 4718200 3669900 10501000 0 9008100 8174000 42357000 35776000 35896000 19986000 20620000 20785000 3208 77 3116 60987;60988;60989;60990;60991;60992;60993;60994;60995;60996;60997;60998;60999;61000;61001;61002;61003;61004;61005;61006;61007;61008;61009;61010;61011;61012;61013;61014 37210;37211;37212;37213;37214;37215;37216;37217;37218;37219;37220;37221;37222;37223;37224;37225;37226;37227;37228 37213 19 DGYADGWAQAGTAR Unmodified 1437.6273 0.62730558 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 28.585 27.318 2 3.7385E-20 12441 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 221.95 221.95 3688600000 497900000 439090000 402510000 14851000 15181000 0 146640000 138200000 132620000 26790000 29569000 26938000 259850000 207580000 192850000 23895000 16125000 15546000 311310000 336250000 375750000 26103000 26100000 26915000 3209 987 3117 61015;61016;61017;61018;61019;61020;61021;61022;61023;61024;61025;61026;61027;61028;61029;61030;61031;61032;61033;61034;61035;61036;61037;61038 37229;37230;37231;37232;37233;37234;37235;37236;37237;37238;37239;37240;37241;37242;37243;37244;37245;37246;37247;37248;37249;37250;37251;37252;37253 37247 25 DGYGFLR Unmodified 826.39735 0.39735263 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 32.362 31.109 2 0.0059292 14778 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.596 93.743 64379000 19058000 15227000 13640000 0 0 0 0 4257100 0 0 0 0 2650900 2514200 0 0 0 0 0 4332600 2699900 0 0 0 3210 1181 3118 61039;61040;61041;61042;61043;61044;61045;61046 37254;37255;37256 37254 3 DGYIAYIDELYNANR Unmodified 1788.8319 0.83187862 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.241 52.793 2 1.6595E-05 26129 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.4 101.89 430190000 90815000 81868000 80483000 0 0 0 8792300 7939300 12228000 0 0 0 28220000 22274000 18993000 0 0 0 24358000 28018000 26199000 0 0 0 3211 340 3119 61047;61048;61049;61050;61051;61052;61053;61054;61055;61056;61057;61058 37257;37258;37259 37258 0 DGYTFVSHQQEVGTGYFDK Unmodified 2176.9702 0.97016302 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 17 19 16 2 1 2 3 7 7 1 2 4 2 3 4 4 39.912 38.391 2;3 1.5621E-95 15959 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 409.68 409.68 19568000000 4936100000 4602400000 3923400000 8950500 8041900 8087100 1094500000 1016100000 993680000 2676600 0 0 338660000 345270000 342600000 0 0 0 653380000 713810000 580280000 0 0 0 3212 517 3120 61059;61060;61061;61062;61063;61064;61065;61066;61067;61068;61069;61070;61071;61072;61073;61074;61075;61076;61077;61078;61079;61080;61081;61082;61083;61084;61085;61086;61087;61088;61089;61090;61091;61092;61093;61094;61095;61096;61097;61098;61099;61100;61101;61102;61103;61104;61105;61106;61107;61108;61109;61110;61111;61112;61113;61114;61115;61116;61117;61118;61119;61120;61121;61122;61123;61124;61125;61126;61127;61128;61129;61130;61131;61132;61133;61134;61135;61136;61137;61138;61139;61140;61141;61142;61143;61144;61145;61146;61147;61148;61149;61150;61151;61152 37260;37261;37262;37263;37264;37265;37266;37267;37268;37269;37270;37271;37272;37273;37274;37275;37276;37277;37278;37279;37280;37281;37282;37283;37284;37285;37286;37287;37288;37289;37290;37291;37292;37293;37294;37295;37296;37297;37298;37299;37300;37301;37302;37303;37304;37305;37306;37307;37308;37309;37310;37311;37312;37313;37314;37315;37316;37317;37318;37319;37320;37321;37322;37323;37324;37325;37326;37327;37328;37329;37330;37331;37332;37333;37334;37335;37336;37337;37338;37339;37340;37341;37342;37343;37344 37300 78 DGYYAAGR Unmodified 871.38243 0.38243085 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.636 14.231 2 0.00089325 3522 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 118.69 118.69 364790000 7883200 6745900 4867400 2334300 2554800 0 22676000 20437000 24310000 10309000 10938000 12834000 17977000 17169000 17091000 2272000 2699300 2432600 26925000 29157000 27295000 34151000 31406000 30324000 3213 205 3121 61153;61154;61155;61156;61157;61158;61159;61160;61161;61162;61163;61164;61165;61166;61167;61168;61169;61170;61171;61172;61173;61174;61175 37345;37346;37347;37348;37349;37350 37348 6 DHALLIDCR Unmodified 1111.5444 0.54442757 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 21.051 21.394 2;3 1.5594E-11 8756 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 218.06 206.55 479440000 70501000 63390000 43650000 0 0 0 56975000 54373000 53228000 0 0 0 21050000 14400000 18329000 0 0 0 27304000 29821000 26420000 0 0 0 3214 278 3122 61176;61177;61178;61179;61180;61181;61182;61183;61184;61185;61186;61187;61188;61189;61190;61191;61192;61193;61194;61195;61196;61197;61198;61199 37351;37352;37353;37354;37355;37356 37352 6 DHAPLMQEINQTGGYNDEIEGK Unmodified 2458.1071 0.10706721 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 33.908 32.327 2;3 1.811E-75 15562 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 370.51 370.51 3241900000 128770000 128750000 112950000 0 0 0 241710000 244570000 239270000 14721000 9396300 13536000 343910000 354110000 370340000 0 0 0 335600000 359840000 331260000 4967600 0 8220400 3215 645 3123 61200;61201;61202;61203;61204;61205;61206;61207;61208;61209;61210;61211;61212;61213;61214;61215;61216;61217;61218;61219;61220;61221;61222;61223;61224;61225;61226;61227;61228 37357;37358;37359;37360;37361;37362;37363;37364;37365;37366;37367;37368;37369;37370;37371;37372;37373;37374;37375;37376;37377;37378;37379;37380;37381;37382;37383 37365 27 DHDDVQQHVDVLLADGK Unmodified 1902.9072 0.90716883 518 P0A9G8 modE Transcriptional regulator ModE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 30.139 29 3 1.3214E-19 13459 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 167.28 165.06 71461000 23552000 23005000 24904000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3216 518 3124 61229;61230;61231 37384;37385;37386 37385 3 DHDFAAIADFDMVR Unmodified 1621.7195 0.7194914 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 46.94 45.55 2;3 7.9193E-11 22222 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 163.78 159.48 467100000 14024000 12809000 11741000 0 0 0 91240000 88424000 73456000 0 0 0 16179000 12215000 12402000 0 0 0 46346000 46099000 42161000 0 0 0 3217 669 3125 61232;61233;61234;61235;61236;61237;61238;61239;61240;61241;61242;61243;61244;61245;61246;61247;61248;61249;61250;61251;61252;61253;61254;61255 37387;37388;37389;37390;37391;37392;37393 37390 7 DHEAGNEILAALNTEQQAWCR Unmodified 2425.1081 0.10807026 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.71 48.301 3 0.032012 19267 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 42.029 41.998 122850000 6201100 8166500 8554600 0 3092700 2415900 5210900 6965700 0 9985700 9308700 8518100 0 4568200 4370400 0 0 0 7699700 8731900 9126100 8053100 5506700 6371600 3218 1488 3126 61256;61257;61258;61259;61260;61261;61262;61263;61264;61265;61266;61267;61268;61269;61270;61271;61272;61273 37394 37394 0 DHFAILK Unmodified 842.46504 0.46503826 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 21.525 21.53 2 0.00010047 9086 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.48 101.92 6653400000 420710000 414880000 440640000 20016000 20835000 15997000 964240000 785210000 984590000 45580000 35968000 35158000 368060000 421650000 425660000 13123000 9723100 8959200 407810000 428320000 327440000 18317000 20334000 20186000 3219 1046 3127 61274;61275;61276;61277;61278;61279;61280;61281;61282;61283;61284;61285;61286;61287;61288;61289;61290;61291;61292;61293;61294;61295;61296;61297;61298;61299;61300 37395;37396;37397;37398;37399;37400;37401;37402;37403;37404;37405;37406;37407;37408 37397 8 DHGDSFR Unmodified 832.34638 0.34637969 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.428 11.243 2 0.0015902 2633 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.31 127.31 639890000 146410000 141200000 146380000 0 0 0 31010000 27926000 30508000 0 0 0 17488000 13623000 12449000 0 0 0 25238000 26832000 20828000 0 0 0 3220 1501 3128 61301;61302;61303;61304;61305;61306;61307;61308;61309;61310;61311;61312 37409 37409 1 DHGSLVSLSNFSTVGSLMGNLTR Oxidation (M) 2407.1802 0.18017257 27 P00393 ndh NADH dehydrogenase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 47.979 45.979 3 1.9484E-06 18728 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 92.8 88.351 22737000 0 0 0 0 0 0 0 0 0 9182600 6017500 6172000 0 0 0 0 0 0 0 0 0 1364800 0 0 3221 27 3129 61313;61314;61315;61316 37410;37411;37412 37410 10 3 DHHVDVTYK Unmodified 1112.5251 0.52507234 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.303 12.136 3 0.05831 3201 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 36.334 35.262 209940000 43876000 52684000 36603000 0 0 0 10721000 15613000 9037600 0 0 0 3051600 3110100 4076800 0 0 0 9317400 10431000 11419000 0 0 0 3222 1541 3130 61317;61318;61319;61320;61321;61322;61323;61324;61325;61326;61327;61328 37413 37413 0 DHIELATR Unmodified 953.49304 0.49304393 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.704 14.301 2 0.00016289 4181 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 155 144.57 270680000 0 0 0 0 0 0 54235000 43008000 46817000 13644000 14728000 12305000 0 18149000 19723000 0 0 0 15583000 16005000 14060000 2422300 0 0 3223 500 3131 61329;61330;61331;61332;61333;61334;61335;61336;61337;61338;61339;61340;61341 37414;37415;37416;37417;37418 37417 4 DHIVGLNCGR Unmodified 1139.5506 0.55057558 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 15.236 16.061 2;3 1.5871E-06 5450 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 190.08 183.98 7120700000 1073200000 1915400000 1859700000 472160 0 562900 448320000 489400000 432850000 0 0 0 134330000 112890000 124020000 0 0 0 193170000 158740000 177570000 0 0 0 3224 195 3132 61342;61343;61344;61345;61346;61347;61348;61349;61350;61351;61352;61353;61354;61355;61356;61357;61358;61359;61360;61361;61362;61363;61364;61365;61366;61367 37419;37420;37421;37422;37423;37424;37425;37426;37427;37428;37429;37430;37431;37432;37433;37434;37435;37436;37437;37438;37439;37440;37441 37423 23 DHKLPIR Unmodified 877.51339 0.51338544 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.521 12.334 2 0.0039867 3272 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.59 108.2 122830000 13914000 8991700 13213000 0 0 0 11861000 10291000 11007000 0 0 0 5837300 0 5130100 0 0 0 16127000 12243000 14216000 0 0 0 3225 338 3133 61368;61369;61370;61371;61372;61373;61374;61375;61376;61377;61378 37442;37443;37444 37443 3 DHLDDPVIGELR Unmodified 1377.6888 0.6888432 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 32.31 30.926 2;3 8.9113E-31 14850 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 259.08 247.93 1754600000 73737000 34607000 32867000 12492000 15692000 14069000 124410000 119310000 132770000 55690000 36671000 34269000 129750000 114320000 113720000 19638000 13795000 13934000 202660000 189990000 185620000 29846000 27853000 26924000 3226 1426 3134 61379;61380;61381;61382;61383;61384;61385;61386;61387;61388;61389;61390;61391;61392;61393;61394;61395;61396;61397;61398;61399;61400;61401;61402;61403;61404;61405;61406;61407;61408;61409;61410;61411;61412;61413;61414;61415;61416;61417;61418;61419;61420;61421;61422;61423;61424 37445;37446;37447;37448;37449;37450;37451;37452;37453;37454;37455;37456;37457;37458;37459;37460;37461;37462;37463;37464;37465;37466;37467;37468;37469;37470;37471;37472;37473;37474;37475;37476;37477;37478;37479;37480;37481;37482;37483;37484;37485;37486 37456 42 DHLDYHGDMEHYEAAK Unmodified 1929.7952 0.79517554 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 16.225 17.027 3;4 3.0406E-10 5954 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.39 137.39 574330000 43749000 45165000 51608000 1267400 1083400 1425800 52834000 52240000 65834000 0 0 1856300 37491000 35942000 33272000 0 0 0 46223000 43025000 61315000 0 0 0 3227 1192 3135 61425;61426;61427;61428;61429;61430;61431;61432;61433;61434;61435;61436;61437;61438;61439;61440;61441;61442;61443;61444;61445;61446;61447;61448;61449;61450;61451;61452 37487;37488;37489;37490;37491;37492;37493;37494;37495;37496;37497;37498;37499 37491 13 DHLGIIPLYMGYDEHGQLYVASEMK Unmodified 2878.367 0.36698706 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 50.621 49.14 3 3.2712E-22 24359 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 167.87 161.71 108190000 5442600 14159000 9949500 0 0 0 26256000 25553000 26833000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3228 1191 3136 61453;61454;61455;61456;61457;61458 37500;37501 37500 2 DHLIIADAIVSK Unmodified 1293.7293 0.72925145 1460 P37182 hybD Hydrogenase 2 maturation protease yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 2 2 2 34.537 33.002 2;3 4.1459E-05 15763 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 96.745 88.44 422510000 3925300 2779200 0 0 0 0 45006000 44069000 38545000 0 1221700 0 45153000 44842000 42438000 0 0 0 50809000 50743000 52981000 0 0 0 3229 1460 3137 61459;61460;61461;61462;61463;61464;61465;61466;61467;61468;61469;61470;61471;61472;61473;61474;61475;61476;61477;61478;61479 37502;37503;37504;37505;37506;37507;37508;37509;37510;37511;37512;37513;37514;37515;37516;37517;37518;37519 37508 11 DHLLDELDHNWEVLAEPIQTVMR Unmodified 2772.3541 0.35411419 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 2 2 2 2 2 55.014 53.545 3;4 1.4149E-35 26205 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 213.45 211.2 1671200000 106140000 227600000 195090000 0 0 0 32886000 64095000 73443000 0 0 0 157300000 142010000 132170000 0 0 0 181360000 178090000 180980000 0 0 0 3230 638 3138 61480;61481;61482;61483;61484;61485;61486;61487;61488;61489;61490;61491;61492;61493;61494;61495;61496;61497;61498;61499;61500;61501 37520;37521;37522;37523;37524;37525;37526;37527;37528;37529;37530;37531 37524 10 DHNEQVSFAQAVTQGLGK Unmodified 1927.9388 0.93880331 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 2 2 2 1 2 1 2 2 2 2 37.972 36.262 2;3 3.153E-110 17424 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 458.57 454.9 1329000000 206780000 182270000 157010000 1667700 1249300 1001200 68088000 60356000 63081000 0 1981800 0 83486000 58248000 68488000 0 0 0 129670000 123770000 121810000 0 0 0 3231 52 3139 61502;61503;61504;61505;61506;61507;61508;61509;61510;61511;61512;61513;61514;61515;61516;61517;61518;61519;61520;61521;61522;61523;61524;61525;61526;61527;61528;61529 37532;37533;37534;37535;37536;37537;37538;37539;37540;37541;37542;37543;37544;37545;37546;37547;37548;37549 37544 18 DHPIKFPAK Unmodified 1051.5815 0.581465 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1 2 2 2 1 1 2 2 1 12.932 13.714 2;3 0.028694 3421 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 57.859 50.213 509460000 35892000 34413000 38805000 0 0 0 34503000 31518000 31568000 0 0 0 49436000 45006000 40621000 2115900 0 6375700 63765000 51408000 44033000 0 0 0 3232 197 3140 61530;61531;61532;61533;61534;61535;61536;61537;61538;61539;61540;61541;61542;61543;61544;61545;61546;61547;61548;61549;61550 37550;37551;37552;37553 37551 3 DHPIYYAGPAK Unmodified 1230.6033 0.60332266 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 1 2 2 2 1 1 2 2 2 17.067 17.698 2;3 3.5441E-06 6235 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.12 150.71 1707100000 193950000 179690000 178770000 712440 808430 534840 139620000 135390000 130850000 1814100 1243600 0 113990000 100110000 106740000 668200 365580 0 146480000 134830000 140560000 0 0 0 3233 696;1097 3141 61551;61552;61553;61554;61555;61556;61557;61558;61559;61560;61561;61562;61563;61564;61565;61566;61567;61568;61569;61570;61571;61572;61573;61574;61575;61576;61577;61578;61579;61580;61581;61582;61583 37554;37555;37556;37557;37558;37559;37560;37561;37562;37563;37564;37565;37566;37567;37568;37569;37570;37571;37572 37566 17 DHPTIALVNR Unmodified 1134.6146 0.61455605 1392 P32173 mobA Molybdenum cofactor guanylyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 20.649 21.085 3 0.0024937 8289 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 56.013 52.34 14163000 0 4784600 4069800 0 0 0 0 3164500 0 0 0 0 0 0 2144500 0 0 0 0 0 0 0 0 0 3234 1392 3142 61584;61585;61586;61587 37573 37573 0 DHPTILEMAK Unmodified 1153.5801 0.58014438 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 2 2 2 24.939 23.915 2;3 1.9613E-06 10074 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 159.28 151.34 1470500000 0 0 0 0 0 0 30237000 32184000 30225000 1819300 1952100 1793800 240970000 213680000 197580000 0 785510 0 253290000 237870000 228140000 0 0 0 3235 38 3143 61588;61589;61590;61591;61592;61593;61594;61595;61596;61597;61598;61599;61600;61601;61602;61603;61604;61605;61606 37574;37575;37576;37577;37578;37579;37580;37581;37582;37583;37584;37585 37582 9 DHQIVVDIPHGEAWLR Unmodified 1883.9642 0.9642302 875 P0AEN1 fre NAD(P)H-flavin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 38.199 36.526 2;3;4 6.303E-31 17712 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 240.37 234.4 1365300000 132560000 112650000 115610000 0 0 0 104430000 103960000 96699000 0 0 0 92557000 88436000 83345000 0 0 0 148020000 151640000 135420000 0 0 0 3236 875 3144 61607;61608;61609;61610;61611;61612;61613;61614;61615;61616;61617;61618;61619;61620;61621;61622;61623;61624;61625;61626;61627;61628;61629;61630;61631;61632;61633;61634;61635;61636;61637;61638;61639;61640;61641;61642 37586;37587;37588;37589;37590;37591;37592;37593;37594;37595;37596;37597;37598;37599;37600;37601;37602;37603;37604;37605;37606;37607;37608;37609;37610;37611;37612;37613 37598 28 DHRPYVVGFAAETNNVEEYAR Unmodified 2436.1458 0.14583597 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 33.168 31.732 3 0.012618 14472 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 54.672 51.574 25743000 0 9667000 0 0 0 0 0 9945200 0 0 0 0 0 6130600 0 0 0 0 0 0 0 0 0 0 3237 670 3145 61643;61644;61645 37614 37614 0 DHTHLALNKEDEK Unmodified 1548.7532 0.75323437 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 3 3 3 3 3 3 2 2 2 1 1 3 3 3 3 3 3 11.092 11.703 2;3;4 1.6957E-75 2392 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 360.54 347.96 883480000 19989000 19093000 7761400 3200000 8310200 3849200 62836000 74998000 66555000 22890000 28498000 26060000 23051000 19740000 23486000 0 8720100 7553200 66732000 66662000 69471000 89661000 83702000 80658000 3238 205 3146 61646;61647;61648;61649;61650;61651;61652;61653;61654;61655;61656;61657;61658;61659;61660;61661;61662;61663;61664;61665;61666;61667;61668;61669;61670;61671;61672;61673;61674;61675;61676;61677;61678;61679;61680;61681;61682;61683;61684;61685;61686;61687;61688;61689;61690;61691;61692;61693;61694;61695;61696;61697;61698 37615;37616;37617;37618;37619;37620;37621;37622;37623;37624;37625;37626;37627;37628;37629;37630;37631;37632;37633;37634;37635;37636;37637;37638;37639 37627 24 DHTHNPPIR Unmodified 1085.5366 0.53664008 1957 Q46845 yghU Disulfide-bond oxidoreductase YghU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 1 2 2 1 2 1 10.304 11.13 2;3 1.9578E-08 2492 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 199.29 187.08 915470000 52371000 0 271990000 0 0 0 90722000 147500000 139850000 0 0 0 10533000 50338000 49181000 0 0 0 16338000 74291000 12365000 0 0 0 3239 1957 3147 61699;61700;61701;61702;61703;61704;61705;61706;61707;61708;61709;61710;61711;61712;61713;61714;61715;61716;61717;61718;61719 37640;37641;37642;37643;37644;37645;37646;37647;37648;37649;37650 37649 11 DHTLFAK Unmodified 830.42865 0.42865276 355 P0A7L8 rpmA 50S ribosomal protein L27 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 14.503 15.075 2 4.171E-06 3976 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 195.98 168.67 5389500000 628900000 627990000 616200000 19352000 15932000 18834000 232230000 210530000 190620000 43005000 47332000 54227000 331370000 293630000 259310000 55201000 36552000 35110000 538900000 477280000 536570000 41836000 40556000 38044000 3240 355 3148 61720;61721;61722;61723;61724;61725;61726;61727;61728;61729;61730;61731;61732;61733;61734;61735;61736;61737;61738;61739;61740;61741;61742;61743;61744;61745 37651;37652;37653;37654;37655;37656;37657;37658;37659;37660;37661;37662;37663;37664;37665;37666;37667;37668;37669;37670;37671 37651 21 DHTSDQLHAEFDGK Unmodified 1598.6961 0.69611342 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.768 17.525 3 3.9241E-07 6227 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 131.36 131.36 630390000 40098000 48100000 33985000 0 0 0 68880000 59892000 58028000 0 0 0 39152000 42856000 41667000 0 0 0 67477000 67359000 62891000 0 0 0 3241 448 3149 61746;61747;61748;61749;61750;61751;61752;61753;61754;61755;61756;61757 37672;37673;37674;37675;37676;37677;37678;37679;37680;37681;37682;37683 37677 12 DHTSDQLHAEFDGKENEELEALNIEVAVAGR Unmodified 3435.6179 0.61786969 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 1 1 1 45.75 44.245 4 2.9635E-33 21463 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 198.06 196.29 445580000 31691000 33610000 0 0 0 0 43746000 51083000 48336000 0 0 0 35621000 34700000 36672000 0 0 0 49240000 44978000 35899000 0 0 0 3242 448 3150 61758;61759;61760;61761;61762;61763;61764;61765;61766;61767;61768;61769;61770 37684;37685;37686;37687;37688;37689;37690;37691;37692;37693;37694;37695;37696 37690 12 DHTSDQLHEEFDAK Unmodified 1670.7172 0.7172428 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 4 4 4 3 3 3 4 3 3 15.666 16.435 2;3;4 1.8827E-95 5971 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 370.78 370.78 2698900000 197500000 180180000 181970000 0 0 0 467880000 437170000 457700000 0 0 0 108770000 107420000 122970000 0 0 0 148580000 151350000 137360000 0 0 0 3243 449 3151 61771;61772;61773;61774;61775;61776;61777;61778;61779;61780;61781;61782;61783;61784;61785;61786;61787;61788;61789;61790;61791;61792;61793;61794;61795;61796;61797;61798;61799;61800;61801;61802;61803;61804;61805;61806;61807;61808;61809;61810 37697;37698;37699;37700;37701;37702;37703;37704;37705;37706;37707;37708;37709;37710;37711;37712;37713;37714;37715;37716;37717;37718;37719;37720;37721;37722;37723;37724 37724 28 DHVSILAMNEDEAEALTGESDPLLASDK Unmodified 2969.3812 0.38117638 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 51.921 50.589 3 1.2379E-22 24504 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 161 160.1 76072000 0 0 0 0 0 0 16778000 15926000 5480800 0 0 0 12235000 0 0 0 0 0 0 0 25653000 0 0 0 3244 891 3152 61811;61812;61813;61814;61815 37725;37726 37726 2 DHVTLGEMHSGLDFAAAVK Unmodified 1996.9677 0.9676606 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 1 3 3 3 1 1 3 3 3 35.907 34.397 2;3;4 5.626E-95 16864 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 344.54 326.88 3289900000 229610000 229790000 184630000 1507900 1283700 1119000 381980000 367240000 335160000 0 1615200 0 255950000 248210000 220760000 0 410310 692360 277130000 277170000 275610000 0 0 0 3245 441 3153 61816;61817;61818;61819;61820;61821;61822;61823;61824;61825;61826;61827;61828;61829;61830;61831;61832;61833;61834;61835;61836;61837;61838;61839;61840;61841;61842;61843;61844;61845;61846;61847;61848;61849;61850;61851;61852;61853;61854;61855;61856;61857 37727;37728;37729;37730;37731;37732;37733;37734;37735;37736;37737;37738;37739;37740;37741;37742;37743;37744;37745;37746;37747;37748;37749;37750;37751;37752;37753 37731 27 DHYVVIQPTAR Unmodified 1297.6779 0.67788459 1271 P25742 rfaQ Lipopolysaccharide core heptosyltransferase RfaQ yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 20.315 20.404 2 5.6735E-05 8272 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.11 96.14 21179000 0 0 0 0 0 0 0 2290600 5969600 1821200 2122200 1675100 0 0 1549600 0 0 0 0 2923300 2827200 0 0 0 3246 1271 3154 61858;61859;61860;61861;61862;61863;61864;61865;61866 37754;37755 37754 2 DIADAITPALLHEVIAILHHDLR Unmodified 2545.4017 0.40165673 1158 P19624 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.537 54.064 5 0.0039083 26657 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 51.645 48.309 139290000 16444000 17438000 16654000 0 0 0 5946200 7979000 7717400 0 0 0 7899300 7452300 7750100 0 0 0 18151000 13580000 12283000 0 0 0 3247 1158 3155 61867;61868;61869;61870;61871;61872;61873;61874;61875;61876;61877;61878 37756 37756 1 DIADAVTAAGVEVAK Unmodified 1428.746 0.74602373 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 3 3 2 2 2 2 41.934 40.33 2;3 2.3371E-11 15618 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 162.49 145.83 6710000000 805220000 731490000 720090000 53533000 51664000 53273000 227320000 206520000 210300000 83131000 56326000 64702000 454940000 346910000 349810000 71913000 53788000 49858000 599770000 644200000 621410000 86444000 86098000 81291000 3248 364 3156 61879;61880;61881;61882;61883;61884;61885;61886;61887;61888;61889;61890;61891;61892;61893;61894;61895;61896;61897;61898;61899;61900;61901;61902;61903;61904;61905;61906;61907;61908;61909;61910;61911;61912;61913;61914;61915;61916;61917;61918;61919;61920;61921;61922;61923;61924;61925;61926;61927;61928;61929;61930;61931 37757;37758;37759;37760;37761;37762;37763;37764;37765;37766;37767;37768;37769;37770;37771;37772;37773;37774;37775;37776;37777;37778;37779;37780;37781;37782;37783;37784;37785;37786;37787;37788;37789;37790;37791;37792;37793;37794;37795;37796;37797;37798 37773 42 DIADNIATILR Unmodified 1213.6667 0.6666512 1886 P77212 rclA Probable pyridine nucleotide-disulfide oxidoreductase RclA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 53.219 51.813 2 1.7209E-07 25490 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168 124.19 38355000 13462000 12267000 12627000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3249 1886 3157 61932;61933;61934 37799;37800;37801 37800 3 DIADYEHNQLMR Unmodified 1503.6776 0.67762659 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.921 26.774 2;3 9.3421E-40 12135 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 285.28 275.05 1885400000 311750000 270380000 250220000 0 0 0 119850000 132690000 145850000 0 0 0 90371000 67224000 69275000 0 0 0 135770000 136060000 155920000 0 0 0 3250 43 3158 61935;61936;61937;61938;61939;61940;61941;61942;61943;61944;61945;61946;61947;61948;61949;61950;61951;61952;61953;61954;61955;61956;61957;61958 37802;37803;37804;37805;37806;37807;37808;37809;37810;37811;37812;37813;37814;37815;37816;37817 37810 15 DIAFLPEGVDEK Unmodified 1331.6609 0.66089712 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.684 42.642 2 3.0439E-05 20923 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.83 108.57 640070000 209440000 195540000 169480000 0 0 0 0 8900500 0 0 0 0 5302200 4608800 5815700 8055300 13828000 7581200 5177000 0 6332900 0 0 0 3251 921 3159 61959;61960;61961;61962;61963;61964;61965;61966;61967;61968;61969;61970 37818;37819;37820 37818 3 DIAGTLAWLK Unmodified 1086.6073 0.6073454 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.862 50.614 2 0.00043055 23620 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 103.56 67.683 286910000 27899000 30052000 23495000 0 0 0 19862000 16843000 16090000 0 0 0 20936000 19091000 22853000 0 0 0 29788000 31643000 28361000 0 0 0 3252 177 3160 61971;61972;61973;61974;61975;61976;61977;61978;61979;61980;61981;61982 37821;37822;37823;37824;37825;37826;37827;37828;37829;37830;37831 37831 11 DIALGEEFVNK Unmodified 1233.6241 0.62411768 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 38.766 37.031 2 0.00012169 18022 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 115.71 96.443 8881800000 1367300000 1237300000 1151300000 3878700 3883100 4088300 556180000 576460000 542000000 0 1104000 0 400700000 359260000 307910000 0 0 0 833930000 799920000 733740000 1036900 753880 1120400 3253 1642 3161 61983;61984;61985;61986;61987;61988;61989;61990;61991;61992;61993;61994;61995;61996;61997;61998;61999;62000;62001;62002;62003;62004;62005 37832;37833;37834;37835;37836;37837;37838;37839;37840;37841;37842;37843;37844;37845;37846;37847;37848;37849;37850;37851 37835 18 DIALTIPNLPADEVPVGK Unmodified 1861.0197 0.019679395 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.119 51.679 2 8.9589E-10 25517 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.21 126.63 704440000 46516000 48796000 45341000 0 0 0 71919000 65403000 66967000 0 0 0 65509000 55895000 61247000 0 0 0 56025000 58563000 62259000 0 0 0 3254 441 3162 62006;62007;62008;62009;62010;62011;62012;62013;62014;62015;62016;62017 37852;37853;37854;37855;37856;37857;37858;37859;37860;37861;37862;37863 37854 12 DIALTIPNLPADEVPVGKDENDNVEVSR Unmodified 3018.5146 0.51457382 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 2 1 3 3 3 3 3 3 49.512 48.144 2;3;4 4.1441E-80 23840 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 286.69 282.6 5468400000 389800000 319770000 355470000 2412900 0 0 485210000 502440000 452300000 0 0 3674700 502170000 479160000 418050000 0 0 0 545130000 535640000 477150000 0 0 0 3255 441 3163 62018;62019;62020;62021;62022;62023;62024;62025;62026;62027;62028;62029;62030;62031;62032;62033;62034;62035;62036;62037;62038;62039;62040;62041;62042;62043;62044;62045;62046;62047;62048;62049;62050;62051;62052;62053;62054 37864;37865;37866;37867;37868;37869;37870;37871;37872;37873;37874;37875;37876;37877;37878;37879;37880;37881;37882;37883;37884;37885;37886 37865 23 DIANTGLRPVMTLSSEIIGVQTLK Unmodified 2555.3993 0.39927347 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.276 52.828 3 4.8557E-16 26176 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155.49 149.77 462640000 88216000 81478000 84541000 0 0 0 18249000 9796800 8836100 0 0 0 18350000 17502000 18988000 0 0 0 42829000 39276000 34573000 0 0 0 3256 1326 3164 62055;62056;62057;62058;62059;62060;62061;62062;62063;62064;62065;62066 37887;37888;37889 37887 3 DIATGVR Unmodified 730.39735 0.39735263 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.06 14.632 2 0.0059292 4460 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.596 18.143 363940000 4794900 5973600 0 0 0 0 0 0 0 2670900 2917700 2577800 54624000 47103000 49917000 0 0 0 62771000 66715000 59454000 1437500 1563300 1417200 3257 1172 3165 62067;62068;62069;62070;62071;62072;62073;62074;62075;62076;62077;62078;62079;62080 37890;37891 37890 1 DIAVLEDAGVPYQLLESSR Unmodified 2074.0582 0.058249746 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.886 53.446 2 1.4359E-36 21710 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 227.42 221.58 224550000 15227000 0 10802000 7822700 10039000 9778100 15083000 0 0 14119000 12333000 14231000 12493000 12672000 11794000 0 0 0 25720000 26682000 25751000 0 0 0 3258 252 3166 62081;62082;62083;62084;62085;62086;62087;62088;62089;62090;62091;62092;62093;62094;62095 37892;37893;37894 37892 3 DIAVVVAENVPAADILSECK Unmodified 2112.0773 0.077270628 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 1 2 2 2 2 2 2 54.184 52.754 2;3 5.2392E-38 25851 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 245.69 239.54 1083400000 56675000 107200000 97165000 0 0 0 31574000 36096000 35420000 0 0 0 128390000 116990000 105170000 0 0 0 123380000 124490000 120850000 0 0 0 3259 161 3167 62096;62097;62098;62099;62100;62101;62102;62103;62104;62105;62106;62107;62108;62109;62110;62111;62112;62113;62114;62115;62116 37895;37896;37897;37898;37899;37900;37901;37902;37903;37904;37905;37906 37895 11 DIAVVVAENVPAADILSECKK Unmodified 2240.1722 0.17223365 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 3 3 3 1 1 2 3 2 1 3 2 2 48.778 47.432 2;3;4 3.9237E-34 22099 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 204.43 189.74 1856200000 160840000 158170000 143520000 0 3564000 2905000 135120000 142040000 146930000 2524200 3136400 0 149290000 147460000 133360000 0 2016500 0 196250000 173420000 155650000 0 0 0 3260 161 3168 62117;62118;62119;62120;62121;62122;62123;62124;62125;62126;62127;62128;62129;62130;62131;62132;62133;62134;62135;62136;62137;62138;62139;62140;62141;62142;62143;62144;62145;62146;62147;62148;62149;62150 37907;37908;37909;37910;37911;37912;37913;37914;37915;37916;37917;37918;37919;37920;37921 37921 13 DICLIPASAHGTNPASAHMAGMQVVVVACDK Unmodified 3219.5297 0.52972884 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 2 2 2 2 1 2 2 2 2 1 2 41.56 39.819 3;4 5.5428E-13 19817 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 127.2 125.43 1718900000 110820000 88948000 91748000 5931000 6017900 4861900 187330000 167050000 131210000 0 6973000 6731700 119850000 91072000 109220000 3996300 0 0 192880000 205130000 169380000 8113500 4759000 6853600 3261 1409 3169 62151;62152;62153;62154;62155;62156;62157;62158;62159;62160;62161;62162;62163;62164;62165;62166;62167;62168;62169;62170;62171;62172;62173;62174;62175;62176;62177;62178;62179;62180;62181;62182;62183;62184;62185;62186;62187;62188 37922;37923;37924;37925;37926;37927;37928;37929;37930;37931;37932;37933;37934;37935;37936;37937;37938;37939;37940;37941;37942;37943;37944;37945;37946;37947;37948;37949 37927 28 DICQCEALWTPAK Unmodified 1590.717 0.71704856 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.482 36.675 2 7.0092E-09 17856 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 196.48 192.72 3382900000 251180000 249210000 205690000 1798100 1439800 1713700 216560000 217100000 202750000 0 2614100 1764200 316900000 305300000 286030000 0 0 0 399910000 374320000 342080000 2096800 2063000 2411400 3262 86 3170 62189;62190;62191;62192;62193;62194;62195;62196;62197;62198;62199;62200;62201;62202;62203;62204;62205;62206;62207;62208 37950;37951;37952;37953;37954;37955;37956;37957;37958;37959;37960;37961;37962 37957 13 DIDALVEQAR Unmodified 1128.5775 0.57750184 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.877 34.234 2 2.2238E-05 16659 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 148.52 74.222 1028800000 184430000 172360000 167130000 17985000 18112000 17248000 91699000 107170000 94709000 0 0 0 28383000 26034000 15307000 0 0 0 24150000 30104000 24057000 3864100 3670600 2410000 3263 613 3171 62209;62210;62211;62212;62213;62214;62215;62216;62217;62218;62219;62220;62221;62222;62223;62224;62225;62226 37963;37964;37965;37966 37963 3 DIDGEVTTLEK Unmodified 1218.598 0.59796251 123 P06610 btuE Vitamin B12 transport periplasmic protein BtuE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 29.968 28.601 2 0.00019455 13548 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 105.2 74.625 1202900000 182400000 180800000 151370000 0 0 961070 104890000 97372000 105730000 0 0 0 50403000 56172000 46984000 0 0 0 72849000 73654000 79268000 0 0 0 3264 123 3172 62227;62228;62229;62230;62231;62232;62233;62234;62235;62236;62237;62238;62239 37967;37968;37969;37970;37971;37972;37973;37974;37975;37976;37977;37978 37968 12 DIDGHDAASIK Unmodified 1140.5411 0.54111633 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 2 2 2 1 2 2 2 2 2 2 1 13.375 14.203 2;3 1.9225E-07 4352 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.55 156.96 7825800000 0 0 0 3594300 0 2016500 1002300000 990930000 882140000 2939500 0 0 820660000 777990000 697180000 0 0 0 813390000 889050000 941710000 0 1978200 0 3265 1299 3173 62240;62241;62242;62243;62244;62245;62246;62247;62248;62249;62250;62251;62252;62253;62254;62255;62256;62257;62258;62259;62260;62261 37979;37980;37981;37982;37983 37980 4 DIDGHDAASIKR Unmodified 1296.6422 0.64222736 1299 P27302 tktA Transketolase 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 2 2 1 1 2 2 1 1 2 2 2 1 11.811 12.599 2;3 2.7484E-05 3461 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 105.25 81.876 1191200000 0 0 0 2738400 3864200 1919800 167850000 150500000 159010000 1745700 1791700 0 118200000 84247000 53958000 0 2191400 0 154130000 138350000 149040000 0 0 1632100 3266 1299 3174 62262;62263;62264;62265;62266;62267;62268;62269;62270;62271;62272;62273;62274;62275;62276;62277;62278;62279;62280;62281;62282;62283;62284;62285;62286 37984;37985;37986;37987;37988;37989;37990;37991;37992 37992 9 DIDIQSPTAR Unmodified 1114.5619 0.56185177 266 P0A6N8 yeiP Elongation factor P-like protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.973 23.069 2 4.5617E-05 10106 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.91 131.74 1386900000 102950000 77423000 77674000 494690 0 561440 142790000 150700000 141310000 0 0 0 81105000 86007000 84814000 0 0 0 181170000 156460000 103410000 0 0 0 3267 266 3175 62287;62288;62289;62290;62291;62292;62293;62294;62295;62296;62297;62298;62299;62300 37993;37994;37995;37996;37997;37998;37999;38000;38001;38002;38003;38004 37999 12 DIDLALDAAHK Unmodified 1180.6088 0.60880197 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 1 2 2 2 28.263 26.917 2;3 1.9816E-05 12183 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.57 127.8 1605500000 448730000 428820000 399360000 4317800 4693100 5066900 80750000 83948000 80581000 1387200 2323300 1418700 6866900 6400300 2457600 0 0 0 15621000 17081000 15663000 0 0 0 3268 1486 3176 62301;62302;62303;62304;62305;62306;62307;62308;62309;62310;62311;62312;62313;62314;62315;62316;62317;62318;62319;62320;62321;62322;62323;62324;62325;62326;62327;62328;62329;62330;62331;62332 38005;38006;38007;38008;38009;38010;38011;38012;38013;38014;38015;38016;38017;38018;38019;38020;38021;38022;38023;38024 38021 16 DIDLQWFTSVVNGK Unmodified 1620.8148 0.814772 1693 P64599 yhbT Uncharacterized protein YhbT yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 23.483 23.248 2 0.11574 7435 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 44.765 38.763 8112100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4145200 1621500 1524800 0 0 0 0 0 820550 3269 1693 3177 62333;62334;62335;62336 38025 38025 1 DIDTIGIPIHWGYEGVAK Unmodified 1983.0102 0.010177341 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.811 49.471 3 1.1918E-06 23927 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 78.078 68.421 138380000 8907800 7352200 7667000 4052900 3132000 3501300 9212500 7812500 7837000 0 4182700 2537600 9723400 9666700 8393000 0 0 0 14645000 11033000 10971000 3008600 2194500 2554500 3270 1393 3178 62337;62338;62339;62340;62341;62342;62343;62344;62345;62346;62347;62348;62349;62350;62351;62352;62353;62354;62355;62356 38026;38027;38028;38029 38027 4 DIDTLISNNALWSK Unmodified 1588.8097 0.80968662 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 52.56 51.364 2 2.3136E-23 25032 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.92 163.49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3271 1639 3179 62357;62358;62359 38030;38031;38032 38030 3 DIDVAAESLK Unmodified 1059.5448 0.54480473 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 28.869 27.744 2 0.0032788 12890 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 73.985 62.574 165400000 36681000 52683000 39021000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17267000 0 19745000 0 0 0 3272 204 3180 62360;62361;62362;62363;62364 38033;38034 38033 2 DIEADTPAR Unmodified 986.46689 0.46688876 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.701 15.451 2 0.0002835 5113 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.29 114.93 275470000 0 0 0 2542300 2622300 2519700 50325000 59169000 46596000 16305000 0 0 0 15402000 11766000 0 0 0 24015000 22829000 21382000 0 0 0 3273 122 3181 62365;62366;62367;62368;62369;62370;62371;62372;62373;62374;62375;62376 38035;38036;38037;38038;38039;38040;38041;38042;38043;38044;38045 38038 8 DIEAFKK Unmodified 849.45962 0.45961853 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.073 14.66 2 0.021161 4623 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 80.294 53.498 641500000 17704000 15967000 12660000 777760 733810 834040 106530000 98520000 119730000 10594000 10727000 10373000 38940000 36271000 40390000 10393000 5679400 4932200 49950000 43842000 0 1866600 1878400 2202200 3274 1745 3182 62377;62378;62379;62380;62381;62382;62383;62384;62385;62386;62387;62388;62389;62390;62391;62392;62393;62394;62395;62396;62397;62398;62399 38046;38047;38048;38049;38050;38051;38052;38053;38054;38055;38056;38057;38058;38059;38060 38056 15 DIEALDELLATLTDDKPR Unmodified 2027.0423 0.04226533 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 55.774 54.28 3 1.795E-17 26792 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.92 164.78 269940000 21901000 22700000 24338000 0 0 0 27975000 16972000 21537000 0 0 0 0 27146000 0 0 0 0 42049000 29274000 36049000 0 0 0 3275 1685 3183 62400;62401;62402;62403;62404;62405;62406;62407;62408;62409 38061;38062;38063 38062 3 DIEAWLDEGR Unmodified 1202.5568 0.5567664 1315 P28248 dcd Deoxycytidine triphosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.515 45.034 2 1.6268E-05 21825 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 176.6 147.52 386850000 42649000 42304000 40176000 0 0 0 36281000 34379000 32708000 0 0 0 23445000 19944000 17379000 0 0 0 33772000 35312000 28505000 0 0 0 3276 1315 3184 62410;62411;62412;62413;62414;62415;62416;62417;62418;62419;62420;62421 38064;38065;38066;38067;38068;38069;38070;38071;38072 38066 9 DIEEDKAPADLASTFLR Unmodified 1889.9371 0.93707198 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 46.173 44.511 2;3 1.4166E-13 22084 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.27 148.07 669360000 41686000 45510000 36558000 3895600 5039100 6797200 44656000 44028000 45868000 24977000 23406000 23982000 39360000 44046000 39708000 0 0 0 55934000 61786000 61931000 4216400 4773500 11201000 3277 1304 3185 62422;62423;62424;62425;62426;62427;62428;62429;62430;62431;62432;62433;62434;62435;62436;62437;62438;62439;62440;62441;62442;62443;62444;62445;62446;62447;62448;62449;62450;62451;62452;62453;62454;62455;62456;62457;62458;62459 38073;38074;38075;38076;38077;38078;38079;38080;38081;38082;38083 38075 11 DIEENYHAQFMEQALHQAGFETR Unmodified 2763.2347 0.23472734 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 44.085 42.593 3 3.0816E-22 20662 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 173.47 173.47 108120000 9289100 16389000 12416000 0 0 0 15706000 12976000 0 0 0 0 8550600 7880700 8636600 0 0 0 8702900 7574300 0 0 0 0 3278 880 3186 62460;62461;62462;62463;62464;62465;62466;62467;62468;62469;62470 38084;38085;38086;38087;38088;38089 38086 6 DIEGEARPQPDIK Unmodified 1466.7365 0.73652168 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 17.333 18.017 2;3 3.2987E-05 6484 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 119.39 102.36 241160000 23336000 21751000 17761000 0 0 0 26684000 26101000 5087300 0 0 0 18419000 20538000 21668000 0 0 0 24621000 8035900 27153000 0 0 0 3279 561 3187 62471;62472;62473;62474;62475;62476;62477;62478;62479;62480;62481;62482;62483;62484;62485;62486;62487;62488;62489;62490;62491;62492;62493 38090;38091;38092;38093;38094;38095;38096;38097;38098 38096 9 DIENQYETQITQIEHEVSSSGQEVQSSAK Unmodified 3263.5066 0.5065879 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 49.807 48.582 3;4 3.8428E-67 19371 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 265 253.08 1220900000 0 0 0 17750000 14192000 13651000 0 0 0 339170000 300020000 249030000 0 0 0 6107300 4267400 4167300 0 0 0 92829000 94509000 85259000 + 3280 16 3188 62494;62495;62496;62497;62498;62499;62500;62501;62502;62503;62504;62505;62506;62507;62508;62509;62510;62511;62512;62513;62514 38099;38100;38101;38102;38103;38104;38105;38106;38107;38108;38109;38110;38111;38112;38113 38101 15 DIEPDKFK Unmodified 990.50221 0.50221163 1179 P21367 ycaC Uncharacterized protein YcaC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.496 17.134 2 0.006219 6134 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.777 82.545 830350000 204980000 178840000 159740000 0 671040 0 59504000 59767000 57035000 0 2099100 4005500 12914000 11849000 11917000 1607400 0 0 18754000 22862000 21715000 0 1061700 1035600 3281 1179 3189 62515;62516;62517;62518;62519;62520;62521;62522;62523;62524;62525;62526;62527;62528;62529;62530;62531;62532 38114;38115;38116;38117;38118;38119;38120;38121;38122;38123 38116 10 DIEYLQSR Unmodified 1022.5033 0.50327426 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 25.821 24.253 2 0.083188 11160 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 53.878 36.03 25368000 0 0 0 4702300 0 0 0 0 17901000 2763900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3282 303 3190 62533;62534;62535;62536 38124;38125;38126 38124 2 DIFAPLIDEHAYSDEEK Unmodified 1990.916 0.91600218 1863 P76491 yfbR 5'-deoxynucleotidase YfbR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.576 44.137 3 6.284E-05 20578 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 69.522 65.772 185890000 22159000 20085000 15917000 0 0 0 11236000 10314000 17790000 0 0 0 14605000 11359000 10944000 0 0 0 13439000 16416000 21629000 0 0 0 3283 1863 3191 62537;62538;62539;62540;62541;62542;62543;62544;62545;62546;62547;62548 38127 38127 1 DIFLLSPDAGAK Unmodified 1245.6605 0.66050319 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.968 45.578 2 3.1303E-08 21189 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 163.94 60.376 1367100000 91322000 108440000 94576000 0 0 0 121550000 114450000 105680000 0 0 0 119930000 108440000 104940000 0 0 0 129370000 128100000 140310000 0 0 0 3284 60 3192 62549;62550;62551;62552;62553;62554;62555;62556;62557;62558;62559;62560 38128;38129;38130;38131;38132;38133;38134;38135;38136;38137;38138;38139 38139 12 DIFLLSPDAGAKPGHQVK Unmodified 1892.0156 0.01559707 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 30.622 29.099 3 0.0060301 11205 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 51.888 42.791 110130000 22881000 26493000 19321000 851230 994580 0 0 0 0 0 3998500 3040000 0 15575000 13818000 0 0 0 0 0 0 0 1349800 1804000 3285 60 3193 62561;62562;62563;62564;62565;62566;62567;62568;62569;62570;62571 38140;38141 38140 2 DIFPAGVINILFGR Unmodified 1530.8558 0.85584895 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 55.859 54.453 2 2.155E-06 27001 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 144.77 143.1 71705000 24194000 24275000 23235000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3286 1925 3194 62572;62573;62574 38142;38143;38144 38143 3 DIFSLTNEEVQELAK Unmodified 1734.8676 0.86759543 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.693 53.273 2 3.88E-27 19496 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 237.68 228.25 1604600000 197810000 161690000 134280000 15839000 15389000 16449000 92214000 86980000 83209000 0 0 0 109290000 108230000 88529000 0 0 0 168320000 154830000 146430000 0 25092000 0 3287 1210 3195 62575;62576;62577;62578;62579;62580;62581;62582;62583;62584;62585;62586;62587;62588;62589;62590 38145;38146;38147;38148;38149;38150;38151;38152;38153;38154;38155;38156;38157;38158;38159 38153 13 DIFTVHDILK Unmodified 1199.655 0.65502388 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 41.553 39.89 2 0.00029946 19573 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.11 79.295 128120000 31237000 34349000 32446000 0 0 0 0 4975500 3604900 0 0 0 4511100 4101200 0 0 0 0 3672600 4905400 4318400 0 0 0 3288 405 3196 62591;62592;62593;62594;62595;62596;62597;62598;62599;62600 38160;38161;38162 38160 3 DIGAQYIIIGHSER Unmodified 1570.8104 0.81035532 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 3 1 1 1 2 3 3 3 2 3 1 2 3 2 33.998 32.577 2;3 2.4033E-26 15417 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 272.97 212.45 12620000000 1068200000 1085700000 896720000 2630500 1704100 1945900 1626300000 1455700000 1349300000 0 0 0 825270000 747150000 802440000 0 1456200 0 908860000 956400000 890070000 0 0 0 3289 399 3197 62601;62602;62603;62604;62605;62606;62607;62608;62609;62610;62611;62612;62613;62614;62615;62616;62617;62618;62619;62620;62621;62622;62623;62624;62625;62626;62627;62628;62629;62630;62631;62632;62633;62634 38163;38164;38165;38166;38167;38168;38169;38170;38171;38172;38173;38174;38175;38176;38177;38178;38179;38180;38181;38182;38183;38184;38185;38186;38187;38188;38189;38190;38191;38192;38193;38194;38195;38196 38176 30 DIGEPSVLNR Unmodified 1098.5669 0.56693715 1535 P39396 yjiY Inner membrane protein YjiY yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 27.943 26.086 2 0.00031558 9610 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 126.41 117.88 64133000 0 0 0 0 0 0 0 0 0 13285000 13593000 12234000 0 0 0 0 0 0 0 0 0 13012000 12008000 0 3290 1535 3198 62635;62636;62637;62638;62639 38197 38197 1 DIGFILK Unmodified 804.47454 0.47454032 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 42.556 40.804 2 0.064661 20373 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 60.358 23.7 1477600000 38653000 34467000 32658000 0 0 0 195790000 211620000 199930000 0 1121200 0 133180000 131030000 122270000 0 0 0 132720000 129860000 114310000 0 0 0 3291 1805 3199 62640;62641;62642;62643;62644;62645;62646;62647;62648;62649;62650;62651;62652;62653 38198;38199;38200;38201;38202;38203;38204;38205;38206;38207;38208;38209 38198 12 DIGGLETNR Unmodified 973.48287 0.48287317 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.652 19.981 2 2.5486E-05 7826 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 139.88 95.186 491310000 0 0 0 6408000 6372200 6274500 73544000 69520000 0 0 23990000 22884000 40300000 33127000 37318000 0 0 0 52542000 46902000 46420000 7059800 9176300 9474700 3292 27 3200 62654;62655;62656;62657;62658;62659;62660;62661;62662;62663;62664;62665;62666;62667;62668;62669;62670;62671 38210;38211;38212;38213;38214;38215;38216;38217;38218;38219;38220;38221 38211 12 DIGIINR Unmodified 799.4552 0.45520186 2001 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 16.746 17.176 2 0.027682 4849 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 69.39 4.6133 2350300000 27473000 29355000 27257000 846350 1687700 0 92171000 5503200 31810000 115770000 44547000 47572000 51588000 48703000 0 531590000 409400000 444000000 27914000 58257000 52117000 67796000 79536000 155380000 + 3293 2001 3201 62672;62673;62674;62675;62676;62677;62678;62679;62680;62681;62682;62683;62684;62685;62686;62687;62688;62689;62690;62691;62692;62693;62694;62695;62696;62697;62698;62699;62700;62701;62702;62703;62704;62705;62706;62707 38222;38223;38224;38225;38226;38227;38228;38229;38230;38231;38232;38233;38234;38235 38222 14 DIGIMDGDLLAVHK Unmodified 1495.7705 0.77046434 330 P0A7C2 lexA LexA repressor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.472 42.982 3 3.9637E-06 20820 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 108.59 105.81 236270000 32507000 24639000 25636000 0 4371300 3798000 10345000 14289000 8490000 5484800 7538800 4407500 13832000 9454000 11205000 4277500 3345000 3371600 13693000 11963000 15453000 2195200 4003900 1968100 3294 330 3202 62708;62709;62710;62711;62712;62713;62714;62715;62716;62717;62718;62719;62720;62721;62722;62723;62724;62725;62726;62727;62728;62729;62730;62731 38236;38237;38238;38239;38240;38241;38242;38243;38244;38245;38246;38247;38248;38249;38250;38251;38252 38249 16 DIGLGFDCR Unmodified 1051.4757 0.4756793 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.717 34.941 2 0.00011997 16895 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.55 129.61 174730000 11487000 13266000 11363000 499310 388970 541790 16708000 18300000 16993000 1351400 1942800 1245600 12417000 11981000 11907000 0 0 0 14702000 16692000 12946000 0 0 0 3295 1482 3203 62732;62733;62734;62735;62736;62737;62738;62739;62740;62741;62742;62743;62744;62745;62746;62747;62748;62749 38253;38254;38255;38256;38257;38258;38259;38260 38256 5 DIGQYIYLR Unmodified 1139.5975 0.597509 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 43.978 42.386 2 0.00028978 20970 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.74 96.612 81293000 5408100 5510100 4115500 0 0 0 14341000 14767000 14067000 0 0 0 6895600 6325400 0 0 0 0 0 0 8198700 0 1664700 0 3296 1260 3204 62750;62751;62752;62753;62754;62755;62756;62757;62758;62759 38261;38262;38263;38264;38265;38266;38267;38268 38262 3 DIHFEGLQR Unmodified 1113.5567 0.55670682 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 25.823 24.674 3 0.0003982 8633 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 96.948 72.918 57256000 0 0 0 3092200 2541600 2661700 0 0 0 7003100 9692600 9241500 0 0 0 0 4389300 4171700 0 0 0 6488500 5536600 2437200 3297 486 3205 62760;62761;62762;62763;62764;62765;62766;62767;62768;62769;62770 38269;38270 38270 2 DIHGAPVGDTLTLAR Unmodified 1534.8104 0.81035532 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 31.037 29.643 2;3 3.6174E-15 13924 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 137.81 132.08 2394500000 169720000 153070000 135740000 14069000 12031000 13870000 117290000 112320000 114160000 24201000 25744000 24894000 92898000 92802000 100460000 117180000 107940000 109120000 169630000 146330000 169480000 115050000 128110000 128420000 3298 1633 3206 62771;62772;62773;62774;62775;62776;62777;62778;62779;62780;62781;62782;62783;62784;62785;62786;62787;62788;62789;62790;62791;62792;62793;62794;62795;62796;62797;62798;62799;62800;62801;62802;62803;62804;62805;62806;62807;62808;62809;62810;62811;62812;62813;62814;62815;62816;62817;62818 38271;38272;38273;38274;38275;38276;38277;38278;38279;38280;38281;38282;38283;38284;38285;38286;38287;38288;38289;38290;38291;38292;38293;38294;38295;38296;38297;38298;38299;38300;38301;38302;38303;38304;38305 38288 33 DIHTLQWVAR Unmodified 1237.6568 0.65675521 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By MS/MS By MS/MS 1 1 31.948 30.071 3 0.00023626 14416 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.287 49.08 25636000 0 0 0 0 0 0 12206000 13429000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3299 1295 3207 62819;62820 38306;38307 38307 2 DIHVHVPEGATPK Unmodified 1398.7256 0.72556306 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 17.619 17.975 2;3 4.67E-07 6625 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 175.15 157.72 1059600000 21322000 28961000 21866000 5948700 1006300 5639500 155240000 143070000 164290000 38514000 32194000 30054000 8178100 10398000 77143000 79332000 65128000 72975000 13307000 16378000 14283000 18270000 17380000 18726000 3300 536 3208 62821;62822;62823;62824;62825;62826;62827;62828;62829;62830;62831;62832;62833;62834;62835;62836;62837;62838;62839;62840;62841;62842;62843;62844;62845;62846;62847;62848;62849;62850;62851;62852;62853;62854;62855;62856;62857;62858 38308;38309;38310;38311;38312;38313;38314;38315;38316;38317;38318;38319;38320;38321;38322;38323;38324;38325;38326;38327;38328;38329;38330;38331;38332;38333;38334;38335;38336 38320 26 DIIAAFVR Unmodified 903.5178 0.51780212 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.934 43.469 2 0.0004557 20989 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.07 68.685 2120900000 141270000 147150000 136430000 2499200 2745300 2887200 177600000 171800000 164010000 29895000 24492000 20363000 159440000 133020000 141730000 10689000 8429700 5868400 190650000 217010000 193010000 14118000 11818000 14003000 3301 882 3209 62859;62860;62861;62862;62863;62864;62865;62866;62867;62868;62869;62870;62871;62872;62873;62874;62875;62876;62877;62878;62879;62880;62881;62882 38337;38338;38339;38340;38341;38342;38343;38344;38345;38346;38347;38348;38349;38350;38351;38352;38353;38354;38355;38356;38357;38358;38359;38360 38351 24 DIIAILGMDELSEEDK Unmodified 1789.8655 0.86554652 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 55.366 53.863 2 1.3546E-13 25755 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 182.07 173.56 326290000 18996000 0 0 0 0 0 35565000 0 31678000 0 0 0 0 64534000 0 0 0 0 55652000 55151000 64717000 0 0 0 3302 646 3210 62883;62884;62885;62886;62887;62888;62889;62890 38361;38362;38363 38362 3 DIIAILGMDELSEEDKLVVAR Unmodified 2328.2247 0.22466315 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 54.856 53.396 2;3 5.8342E-88 25226 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 324.94 311.53 4151300000 79641000 77451000 85872000 32838000 21302000 21115000 308760000 276340000 235480000 113850000 115500000 142520000 350650000 342640000 407740000 0 0 0 443800000 432460000 436610000 81296000 74860000 70534000 3303 646 3211 62891;62892;62893;62894;62895;62896;62897;62898;62899;62900;62901;62902;62903;62904;62905;62906;62907;62908;62909;62910;62911;62912;62913;62914;62915;62916;62917;62918;62919;62920;62921;62922 38364;38365;38366;38367;38368;38369;38370;38371;38372;38373;38374;38375;38376;38377;38378;38379;38380;38381;38382;38383;38384;38385;38386 38386 23 DIIGPELVTLHNLK Unmodified 1560.8875 0.88754301 686 P0ABY4 fldB Flavodoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.596 42.081 3 1.1612E-05 20588 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.039 59.516 102080000 12939000 10278000 9355400 0 0 0 8668100 8591200 8236200 0 0 0 10084000 6236400 8031900 0 0 0 5384700 7455700 6823700 0 0 0 3304 686 3212 62923;62924;62925;62926;62927;62928;62929;62930;62931;62932;62933;62934 38387;38388;38389;38390;38391;38392;38393;38394;38395 38390 9 DIKEQEVYMGEIPLMTDNGTFVINGTER Oxidation (M) 3214.5162 0.51623007 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 3 3 3 3 50.509 49.5 3 1.0143E-22 18455 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 165.79 164.61 388190000 0 0 0 0 0 0 0 0 0 28020000 37331000 31686000 0 0 0 68478000 47997000 60063000 0 0 0 40868000 40703000 33048000 3305 463 3213 62935;62936;62937;62938;62939;62940;62941;62942;62943;62944;62945;62946;62947;62948;62949;62950;62951;62952;62953;62954;62955;62956;62957;62958 38396;38397;38398;38399;38400;38401;38402;38403;38404;38405;38406;38407;38408;38409;38410;38411;38412;38413;38414;38415 38402 255;256 20 DIKEQEVYMGEIPLMTDNGTFVINGTER Unmodified 3198.5213 0.52131545 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 3 2 1 1 2 53.534 52.755 3;4 1.7055E-23 20584 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 177.82 177.66 9913800000 0 0 0 0 1410100 0 0 0 0 405330000 441180000 471340000 0 0 0 2327700000 2132300000 1937200000 0 0 0 776610000 729090000 691660000 3306 463 3213 62959;62960;62961;62962;62963;62964;62965;62966;62967;62968;62969;62970;62971;62972;62973 38416;38417;38418;38419;38420;38421;38422;38423;38424;38425;38426;38427 38416 11 DIKLPEK Unmodified 841.49092 0.49091866 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 16.416 16.405 2 0.0014732 4386 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 143.12 105.47 53776000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29083000 13516000 11177000 0 0 0 0 0 0 3307 515 3214 62974;62975;62976 38428;38429;38430 38430 3 DILCQYVEYITNIR Unmodified 1798.8924 0.89237039 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 55.604 54.134 2;3 5.8714E-08 26690 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.18 162.26 1111100000 80135000 100620000 75015000 1352500 0 0 87820000 73785000 73693000 0 2481700 0 101850000 96483000 84198000 0 0 0 125800000 106240000 101610000 0 0 0 3308 1759 3215 62977;62978;62979;62980;62981;62982;62983;62984;62985;62986;62987;62988;62989;62990;62991;62992;62993;62994;62995;62996;62997;62998;62999;63000;63001;63002 38431;38432;38433;38434;38435;38436;38437;38438;38439;38440;38441 38433 11 DILELADTVSELRPVK Unmodified 1796.9884 0.98837927 521 P0A9H5 btuR Cob(I)yrinic acid a,c-diamide adenosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.137 46.569 2;3;4 2.6545E-09 25043 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 132.44 132.11 291860000 35262000 32589000 32750000 3965300 4509900 4618000 11404000 11527000 15613000 8971800 10523000 8612600 15101000 14456000 14634000 0 0 0 19947000 18477000 19983000 3430100 1970000 3517600 3309 521 3216 63003;63004;63005;63006;63007;63008;63009;63010;63011;63012;63013;63014;63015;63016;63017;63018;63019;63020;63021;63022;63023;63024;63025;63026 38442;38443;38444;38445;38446;38447;38448;38449;38450;38451;38452;38453 38448 10 DILEVICK Unmodified 988.52632 0.52631789 306 P0A734 minE Cell division topological specificity factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 40.931 39.154 1;2 0.00068092 19093 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 144.38 128.23 1440600000 126270000 130010000 115680000 4222300 4531400 4140900 115330000 107130000 109010000 6635600 4085500 5139500 100410000 90384000 102730000 0 0 0 138660000 144670000 123930000 0 3963100 3683700 3310 306 3217 63027;63028;63029;63030;63031;63032;63033;63034;63035;63036;63037;63038;63039;63040;63041;63042;63043;63044;63045;63046;63047;63048;63049;63050;63051;63052;63053;63054;63055;63056;63057;63058 38454;38455;38456;38457;38458;38459;38460;38461;38462;38463;38464;38465;38466;38467;38468;38469;38470;38471;38472 38462 19 DILFGTTGPR Unmodified 1075.5662 0.56620887 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 2 1 1 1 2 36.427 34.889 2 0.00018646 17048 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.52 116.07 151930000 25725000 22743000 21960000 2014700 1714900 1794800 13140000 13216000 12403000 0 0 0 5805300 5736700 3827000 0 0 0 5612400 6794700 9440800 0 0 0 3311 1528 3218 63059;63060;63061;63062;63063;63064;63065;63066;63067;63068;63069;63070;63071;63072;63073;63074;63075;63076 38473;38474;38475;38476;38477 38474 2 DILFVYGQIHNTVR Unmodified 1673.8889 0.88893999 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 2 2 2 2 2 2 2 42.178 40.468 2;3 4.9233E-08 19048 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 112.15 94.237 561400000 8186600 9385200 207160000 0 0 0 39979000 54679000 38797000 0 0 0 32801000 26189000 23664000 0 0 0 38525000 42269000 39773000 0 0 0 3312 801 3219 63077;63078;63079;63080;63081;63082;63083;63084;63085;63086;63087;63088;63089;63090;63091;63092;63093;63094;63095;63096;63097;63098 38478;38479;38480;38481;38482;38483;38484;38485;38486;38487;38488;38489;38490;38491;38492;38493 38489 15 DILGGLR Unmodified 742.43374 0.43373813 1623 P60560 guaC GMP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.789 31.333 2 0.00547 14798 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.511 10.884 1750900000 159380000 148160000 139800000 910740 971650 699870 140700000 111960000 116230000 0 0 0 133500000 134730000 125090000 0 0 0 171960000 180780000 185990000 0 0 0 3313 1623 3220 63099;63100;63101;63102;63103;63104;63105;63106;63107;63108;63109;63110;63111;63112;63113 38494;38495;38496;38497;38498;38499;38500;38501;38502;38503;38504;38505 38498 12 DILIISTPQDTPR Unmodified 1467.7933 0.79330827 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.56 39.748 2 2.1249E-08 19392 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 157.38 149.45 1925500000 117230000 120730000 94818000 805730 0 640630 157710000 154660000 144070000 1488000 1370400 0 161920000 138890000 123360000 0 0 0 224930000 253160000 229740000 0 0 0 3314 1489 3221 63114;63115;63116;63117;63118;63119;63120;63121;63122;63123;63124;63125;63126;63127;63128;63129 38506;38507;38508;38509;38510;38511;38512;38513;38514;38515;38516;38517 38509 12 DILISLR Unmodified 828.5069 0.50690308 1325 P28905 holC DNA polymerase III subunit chi yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.977 38.301 2 0.0015084 18760 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.75 71.302 104810000 11188000 11799000 10678000 293350 0 0 10991000 9306700 9811700 0 0 0 5142200 3838800 5828500 0 0 0 9771400 8811900 7346000 0 0 0 3315 1325 3222 63130;63131;63132;63133;63134;63135;63136;63137;63138;63139;63140;63141;63142 38518;38519;38520;38521 38519 4 DILNVHTAINHQEIWR Unmodified 1958.0122 0.012243026 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 34.709 33.315 4 1.6449E-10 15826 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146.47 141.57 59166000 21194000 16440000 15738000 0 0 0 0 1779300 0 0 0 0 0 0 0 0 0 0 0 4014700 0 0 0 0 3316 204 3223 63143;63144;63145;63146;63147 38522;38523 38522 2 DIMDAGK Unmodified 748.34254 0.34253987 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.599 16.443 2 0.017717 5650 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.454 64.434 4150100000 312030000 296210000 280450000 2216200 1901500 2058700 330140000 344300000 312970000 0 0 0 413940000 302270000 289470000 0 0 0 426550000 431100000 404470000 0 0 0 3317 1733 3224 63148;63149;63150;63151;63152;63153;63154;63155;63156;63157;63158;63159;63160;63161;63162 38524;38525;38526;38527;38528;38529;38530;38531;38532;38533;38534 38527 11 DIMDAGK Oxidation (M) 764.33745 0.33745449 1733 P69441 adk Adenylate kinase yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 10.764 11.591 2 0.15067 2846 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 42.229 23.274 248560000 4152900 0 17389000 0 0 0 30869000 27491000 29069000 0 0 0 20217000 21583000 18074000 0 0 0 25657000 25676000 28384000 0 0 0 3318 1733 3224 63163;63164;63165;63166;63167;63168;63169;63170;63171;63172;63173 38535;38536 38535 0 DINACGEMAR Unmodified 1135.475 0.47502738 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.215 17.951 2 8.8907E-05 6429 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.5 121.92 154260000 45281000 42044000 38803000 714850 871600 0 0 2961900 0 0 0 0 4871600 4315100 2926200 0 0 0 3797100 4226700 3446000 0 0 0 3319 225 3225 63174;63175;63176;63177;63178;63179;63180;63181;63182;63183;63184;63185 38537;38538;38539;38540 38539 3 DINLDIHEGEFVVFVGPSGCGK Unmodified 2388.142 0.14199615 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 52.317 50.953 3 0.010191 20253 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 55.588 50.935 158610000 0 0 0 0 1315100 0 0 6896900 9922700 24404000 21757000 21418000 0 8157800 0 0 0 0 13976000 13179000 12136000 8447900 7727000 9269400 3320 1718 3226 63186;63187;63188;63189;63190;63191;63192;63193;63194;63195;63196;63197;63198 38541;38542 38541 0 DINQAAGQFSAMQK Unmodified 1507.7089 0.70892672 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 30.207 28.901 2 1.9495E-19 13556 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.56 201.26 124070000 26916000 24239000 20973000 0 0 0 0 12579000 13671000 0 0 0 4688900 3331800 2776900 0 0 0 6195300 4214300 4483600 0 0 0 3321 1887 3227 63199;63200;63201;63202;63203;63204;63205;63206;63207;63208;63209 38543;38544;38545;38546;38547;38548 38545 6 DINWDMK Unmodified 920.4062 0.40620276 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.755 30.398 2 0.0059588 14632 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.473 82.252 1080100000 88916000 91268000 76639000 0 0 0 74431000 81604000 97014000 0 0 0 82151000 78930000 71620000 0 0 0 109710000 116380000 111470000 0 0 0 3322 158 3228 63210;63211;63212;63213;63214;63215;63216;63217;63218;63219;63220;63221 38549;38550;38551;38552;38553;38554;38555;38556;38557;38558;38559;38560 38549 12 DIPDNWSMLDPIK Unmodified 1542.7388 0.73882986 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By MS/MS 1 54.432 52.83 2 0.00023602 26161 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 99.522 95.759 10169000 0 0 0 0 0 0 0 0 10169000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3323 1318 3229 63222 38561 38561 1 DIPFPGLR Unmodified 913.50215 0.50215205 1881 P77148 ydhS Uncharacterized protein YdhS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.815 41.179 2 0.0031669 19956 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.401 85.388 94061000 19638000 15676000 16089000 0 0 0 9119400 10189000 7448900 0 0 0 1651700 1618100 1610300 0 0 0 3876300 3203200 3941400 0 0 0 3324 1881 3230 63223;63224;63225;63226;63227;63228;63229;63230;63231;63232;63233;63234 38562;38563;38564;38565;38566;38567 38567 6 DIPGFCTFMEHELVAK Unmodified 1892.8801 0.88009115 409 P0A890 tusA Sulfurtransferase TusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.194 49.938 3 1.545E-06 24311 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.428 95.384 450890000 43779000 33521000 38579000 0 0 0 29146000 34538000 28146000 0 0 0 36596000 35609000 38216000 0 0 0 40479000 49427000 42853000 0 0 0 3325 409 3231 63235;63236;63237;63238;63239;63240;63241;63242;63243;63244;63245;63246 38568;38569;38570;38571;38572;38573;38574;38575;38576;38577;38578;38579 38571 12 DIPGQVYTPPQLGTYYYAFNTQK Unmodified 2663.2908 0.29076888 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 53.269 51.851 3 0.094725 25414 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 29.591 19.266 62866000 5328300 0 0 0 0 0 0 8411800 9280900 0 0 0 5478000 3858400 4124100 0 0 0 0 12813000 10415000 0 0 3156300 3326 1900 3232 63247;63248;63249;63250;63251;63252;63253;63254;63255 38580 38580 1 DIPLLSR Unmodified 812.4756 0.47560295 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.181 34.615 2 0.0008957 16520 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 141.98 123.3 1038000000 131250000 122370000 109670000 0 643020 713680 49634000 49513000 44446000 0 0 0 83907000 77725000 80842000 0 0 0 89716000 94523000 103030000 0 0 0 3327 638 3233 63256;63257;63258;63259;63260;63261;63262;63263;63264;63265;63266;63267;63268;63269 38581;38582;38583;38584;38585;38586;38587;38588;38589;38590;38591;38592 38586 12 DIPVVMLTAR Unmodified 1113.6216 0.62161526 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.764 43.212 2 0.029408 20216 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 57.55 55.126 1274400000 9314100 0 7587200 1019200 1023400 1210000 115930000 107940000 111500000 0 0 0 128860000 130520000 113950000 0 0 0 191310000 183330000 170900000 0 0 0 3328 946 3234 63270;63271;63272;63273;63274;63275;63276;63277;63278;63279;63280;63281;63282;63283 38593;38594;38595;38596;38597;38598 38597 6 DIQDPEVIK Unmodified 1055.5499 0.5498901 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.614 23.632 2 0.018307 10519 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 65.156 62.043 80205000 13863000 11722000 12178000 0 0 0 5104500 4183800 4732300 0 0 0 4166800 3040600 4716200 0 0 0 6489300 4863800 5145000 0 0 0 3329 1295 3235 63284;63285;63286;63287;63288;63289;63290;63291;63292;63293;63294;63295 38599 38599 0 DIQDWCISR Unmodified 1191.5343 0.53425682 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 35.533 33.724 2 0.002585 16505 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.615 80.68 768810000 0 0 1851500 752210 0 0 115090000 119990000 113650000 1823600 0 0 0 0 0 0 0 0 133020000 135870000 145140000 0 828710 803270 3330 158 3236 63296;63297;63298;63299;63300;63301;63302;63303;63304;63305;63306 38600;38601 38600 1 DIQEEWVK Unmodified 1045.508 0.50802529 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 29.306 27.947 2 0.0047487 13211 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 87.754 51.874 379930000 43422000 37789000 31899000 0 0 0 32551000 26249000 35969000 933680 0 0 21347000 23675000 20617000 0 0 0 33648000 36111000 35720000 0 0 0 3331 1650 3237 63307;63308;63309;63310;63311;63312;63313;63314;63315;63316;63317;63318;63319 38602;38603;38604;38605;38606 38602 5 DIQGLEHFDK Unmodified 1200.5775 0.57750184 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 25.608 24.723 2;3 0.00091469 7742 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 87.806 81.494 414670000 40821000 38222000 34854000 0 0 0 34928000 33310000 30218000 0 1954600 0 23086000 24994000 22454000 16082000 16693000 18110000 26965000 26821000 25159000 0 0 0 3332 222 3238 63320;63321;63322;63323;63324;63325;63326;63327;63328;63329;63330;63331;63332;63333;63334;63335;63336;63337;63338;63339;63340;63341;63342;63343;63344;63345;63346;63347;63348;63349;63350 38607;38608;38609;38610;38611;38612;38613;38614;38615;38616 38610 10 DIQGLEHFDKVIDIDQSPIGR Unmodified 2394.2179 0.21793828 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 2 2 2 1 1 45.59 44.522 3;4 1.9723E-15 16119 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 147.21 139.76 148390000 0 0 0 0 1021100 0 0 0 0 2760800 5191600 2979100 0 0 2750300 37840000 46261000 45299000 0 0 0 0 1532700 2754300 3333 222 3239 63351;63352;63353;63354;63355;63356;63357;63358;63359;63360;63361;63362;63363;63364 38617;38618;38619;38620;38621 38621 5 DIQLATPPQVGAPATEYAALAELK Unmodified 2466.3006 0.30060528 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 1 1 54.129 52.696 2;3 1.4546E-40 25929 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 218.12 210.71 2159300000 148820000 125780000 123960000 17806000 18730000 21874000 166350000 158960000 159090000 16565000 14511000 15818000 179360000 174650000 169060000 0 0 0 122600000 260650000 243650000 7155600 6854900 7011700 3334 1409 3240 63365;63366;63367;63368;63369;63370;63371;63372;63373;63374;63375;63376;63377;63378;63379;63380;63381;63382;63383;63384;63385;63386;63387;63388;63389;63390;63391;63392;63393;63394;63395;63396;63397;63398;63399;63400;63401;63402 38622;38623;38624;38625;38626;38627;38628;38629;38630;38631;38632;38633;38634;38635;38636;38637;38638;38639;38640;38641;38642;38643 38636 22 DIQLWQVVFSR Unmodified 1389.7405 0.74048484 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.302 53.829 2 2.4859E-10 26693 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 214.58 197.15 192570000 0 0 0 2208600 2068500 1680000 40338000 44286000 40535000 19899000 14827000 13844000 6114600 0 6765100 0 0 0 0 0 0 0 0 0 3335 522 3241 63403;63404;63405;63406;63407;63408;63409;63410;63411;63412;63413 38644;38645;38646;38647;38648;38649 38649 6 DIQPSVGFASR Unmodified 1175.5935 0.59348625 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.387 27.827 2 0.00025038 10343 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 98.044 92.263 64354000 0 4808200 0 798430 781010 875420 7608400 0 6100300 6061200 4886900 4169200 2993100 0 3722200 0 0 0 5550000 4848400 5674300 2415700 1886700 1174500 3336 1877 3242 63414;63415;63416;63417;63418;63419;63420;63421;63422;63423;63424;63425;63426;63427;63428;63429;63430 38650;38651;38652 38652 2 DIQQFIEKPPGK Unmodified 1398.7507 0.75071518 1538 P39407 yjjU Uncharacterized protein YjjU yes yes 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 30.428 28.437 3 0.021311 10747 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 43.382 40.516 13959000 0 0 0 1677000 0 0 0 0 0 4130600 3793400 3652000 0 0 0 0 0 0 0 0 0 0 0 705570 3337 1538 3243 63431;63432;63433;63434;63435 38653 38653 0 DIQQTIK Unmodified 844.46543 0.46543219 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 2 1 2 2 2 2 1 2 2 1 1 1 1 2 2 2 14.863 15.485 2 0.0053719 5162 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.919 41.259 5103600000 293690000 308130000 302080000 27369000 25630000 23320000 685790000 691760000 703180000 76139000 51929000 39109000 331590000 319990000 278330000 6076900 4046800 4060600 329220000 315770000 286390000 0 0 0 3338 1045 3244 63436;63437;63438;63439;63440;63441;63442;63443;63444;63445;63446;63447;63448;63449;63450;63451;63452;63453;63454;63455;63456;63457;63458;63459;63460;63461;63462;63463;63464;63465;63466;63467;63468 38654;38655;38656;38657;38658;38659;38660;38661;38662;38663;38664;38665;38666;38667;38668;38669;38670 38657 16 DIRDPMELLDEVENELK Unmodified 2056.9987 0.99868596 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 1 2 55.547 54.13 2;3 6.7059E-18 26666 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 156.17 146.88 546180000 48272000 55096000 58179000 0 0 0 0 0 0 0 0 0 71736000 69703000 47577000 0 0 0 107080000 0 88540000 0 0 0 3339 346 3245 63469;63470;63471;63472;63473;63474;63475;63476;63477;63478;63479;63480;63481;63482;63483;63484 38671;38672;38673;38674;38675;38676;38677;38678;38679;38680 38673 10 DIRGFATK Unmodified 906.49232 0.49231565 1174 P21179 katE Catalase HPII yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.587 15.353 2 0.14476 5060 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 52.636 6.266 670800000 55751000 53697000 47967000 0 0 0 82010000 98757000 93021000 0 0 0 46755000 36692000 35146000 0 0 0 43572000 38560000 38875000 0 0 0 3340 1174 3246 63485;63486;63487;63488;63489;63490;63491;63492;63493;63494;63495;63496 38681 38681 1 DISDANFIYR Unmodified 1212.5775 0.57750184 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.3 36.436 2 0.00024619 14148 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 141.52 141.52 170840000 3498800 3663400 4497600 1483400 1244100 1136100 16359000 16603000 16828000 5753700 6077900 6359600 13021000 15193000 10004000 0 0 0 0 14414000 18071000 5336400 5370700 5929800 3341 1494 3247 63497;63498;63499;63500;63501;63502;63503;63504;63505;63506;63507;63508;63509;63510;63511;63512;63513;63514;63515;63516 38682;38683;38684;38685;38686;38687;38688;38689;38690;38691;38692;38693;38694 38687 12 DISELVR Unmodified 830.44978 0.44978213 526 P0A9J0 rng Ribonuclease G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.099 28.624 2 0.0034949 13440 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.74 63.134 66497000 11521000 9447200 10163000 0 0 0 4102200 4769900 3470700 0 745170 823060 2962100 2742100 2240400 0 0 0 3825300 4771400 4156100 0 0 757190 3342 526 3248 63517;63518;63519;63520;63521;63522;63523;63524;63525;63526;63527;63528;63529;63530;63531 38695;38696;38697;38698 38696 4 DISFEAPNAPHVFQK Unmodified 1698.8366 0.83657007 996 P0AG86 secB Protein-export protein SecB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 2 2 3 2 2 3 3 2 4 3 3 3 3 3 2 4 2 2 2 2 35.807 34.303 2;3;4 2.1131E-11 11861 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 204.17 188.63 28231000000 1504800000 1420900000 1248600000 229350000 208780000 221970000 1578800000 1614500000 1473300000 281220000 265670000 251100000 1337600000 1220000000 1325700000 3566700000 2608200000 2290900000 1545300000 1518100000 1511300000 346840000 337900000 323050000 3343 996 3249 63532;63533;63534;63535;63536;63537;63538;63539;63540;63541;63542;63543;63544;63545;63546;63547;63548;63549;63550;63551;63552;63553;63554;63555;63556;63557;63558;63559;63560;63561;63562;63563;63564;63565;63566;63567;63568;63569;63570;63571;63572;63573;63574;63575;63576;63577;63578;63579;63580;63581;63582;63583;63584;63585;63586;63587;63588;63589;63590;63591;63592;63593;63594 38699;38700;38701;38702;38703;38704;38705;38706;38707;38708;38709;38710;38711;38712;38713;38714;38715;38716;38717;38718;38719;38720;38721;38722;38723;38724;38725;38726;38727;38728;38729;38730;38731;38732;38733;38734;38735;38736;38737;38738;38739;38740;38741;38742;38743;38744;38745;38746;38747 38734 47 DISSANLR Unmodified 874.45084 0.45084476 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.595 17.295 2 0.0031662 6240 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.407 59.302 537110000 37776000 30126000 36372000 0 0 0 60225000 56271000 50954000 0 0 0 43391000 46985000 40616000 0 0 721680 40054000 47091000 46532000 0 0 0 3344 803 3250 63595;63596;63597;63598;63599;63600;63601;63602;63603;63604;63605;63606;63607 38748;38749;38750;38751;38752;38753;38754;38755 38749 8 DISTALGLK Unmodified 916.52295 0.52294707 737 P0ACN4 allR HTH-type transcriptional repressor AllR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 36.691 36.78 2 0.0055006 13367 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 74.255 44.07 36463000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14576000 9409900 12477000 0 0 0 0 0 0 3345 737 3251 63608;63609;63610 38756;38757;38758 38756 3 DISTSSQK Unmodified 864.41888 0.41887593 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 5.398 6.4853 2 0.012394 1102 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 75.189 68.802 12856000 0 0 0 3858000 5085100 3913400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3346 76 3252 63611;63612;63613 38759;38760;38761 38759 3 DISVQLHTVIAQYPGAELEAK Unmodified 2281.1954 0.19541193 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 47.185 45.641 3 4.3159E-07 22249 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.31 91.457 98138000 16289000 16117000 16028000 2575500 2953900 2918800 0 12542000 14797000 4635500 0 4699800 0 0 0 0 0 0 0 4581700 0 0 0 0 3347 1377 3253 63614;63615;63616;63617;63618;63619;63620;63621;63622;63623;63624 38762;38763;38764;38765;38766 38765 5 DISYYTVHESFVATIPLVFCEAEK Unmodified 2817.3571 0.35713388 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 54.732 53.172 3 0.016612 26252 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 50.539 41.052 103360000 0 0 0 0 0 0 21831000 25126000 22583000 0 2413200 0 0 0 0 0 0 0 2743000 28661000 0 0 0 0 3348 473 3254 63625;63626;63627;63628;63629;63630 38767 38767 0 DITADVLK Unmodified 873.48075 0.48074791 888 P0AEU7 skp Chaperone protein Skp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.2 29.96 2 0.012443 13976 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.109 36.303 3498100000 0 392120000 338130000 0 0 0 488670000 415670000 465110000 40757000 47071000 0 321490000 304350000 278890000 25057000 23462000 24482000 0 0 332860000 0 0 0 3349 888 3255 63631;63632;63633;63634;63635;63636;63637;63638;63639;63640;63641;63642;63643;63644 38768;38769;38770;38771;38772;38773;38774;38775;38776;38777;38778;38779 38775 12 DITGGLPR Unmodified 827.45012 0.45011648 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 24.15 23.445 2 0.00066427 7372 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 128.38 114.83 36663000000 325290000 333860000 317670000 13548000 12644000 15149000 202710000 191630000 180740000 2897300000 2407900000 2509000000 246730000 248470000 207160000 6561400000 5542400000 5613100000 302600000 308320000 303130000 2946900000 2649500000 2325700000 3350 458 3256 63645;63646;63647;63648;63649;63650;63651;63652;63653;63654;63655;63656;63657;63658;63659;63660;63661;63662;63663;63664;63665;63666;63667;63668;63669;63670;63671;63672;63673 38780;38781;38782;38783;38784;38785;38786;38787;38788;38789;38790;38791;38792;38793;38794;38795;38796;38797;38798;38799;38800;38801;38802;38803;38804;38805;38806;38807;38808;38809;38810;38811;38812;38813;38814;38815;38816;38817;38818;38819;38820;38821 38787 42 DITGVVK Unmodified 730.4225 0.42250475 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 2 3 4 3 1 1 1 2 2 2 1 2 1 4 4 4 19.8 19.916 1;2 0.02764 6062 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 69.432 28.512 19471000000 5983300 20571000 4422600 1753300 0 0 38337000 41091000 35414000 1913300000 1687400000 1538700000 3780600 4384000 4113400 594560000 454710000 514550000 12787000 12384000 7223000 4646600000 3957600000 3971400000 3351 422 3257 63674;63675;63676;63677;63678;63679;63680;63681;63682;63683;63684;63685;63686;63687;63688;63689;63690;63691;63692;63693;63694;63695;63696;63697;63698;63699;63700;63701;63702;63703;63704;63705;63706;63707;63708;63709;63710;63711;63712;63713;63714;63715;63716;63717;63718;63719 38822;38823;38824;38825;38826;38827;38828;38829;38830;38831;38832;38833;38834;38835;38836;38837;38838;38839;38840;38841 38828 19 DITIYWGGR Unmodified 1079.54 0.53999412 875 P0AEN1 fre NAD(P)H-flavin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 1 1 1 43.006 41.427 2 0.00019889 20189 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.67 106.19 203870000 23865000 21229000 17345000 0 0 330620 22717000 21584000 16302000 0 0 0 0 0 0 0 0 0 27894000 28948000 23659000 0 0 0 3352 875 3258 63720;63721;63722;63723;63724;63725;63726;63727;63728;63729;63730;63731;63732;63733 38842;38843;38844;38845;38846;38847;38848;38849;38850;38851;38852 38846 11 DITLAMDCAASEFYK Oxidation (M) 1749.759 0.75897296 270 P0A6P9 eno Enolase yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 2 2 42.232 40.645 2 2.3117E-08 19624 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.24 137.93 98516000 5059100 5379800 4484300 0 0 0 14763000 6075600 13068000 0 0 0 5630100 5844900 7597500 0 0 0 9076500 11560000 9977400 0 0 0 3353 270 3259 63734;63735;63736;63737;63738;63739;63740;63741;63742;63743;63744;63745;63746;63747;63748;63749 38853;38854;38855;38856;38857;38858;38859;38860;38861;38862 38853 124 7 DITLAMDCAASEFYK Unmodified 1733.7641 0.76405833 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 4 4 5 3 3 3 4 3 3 52.027 50.685 2;3 2.7706E-27 24539 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 240.8 237.12 14568000000 898030000 901230000 780860000 3317500 2055200 2580400 1833200000 1647000000 1548500000 0 0 0 1366000000 1278900000 1267600000 0 0 0 982830000 1047700000 1008000000 0 0 0 3354 270 3259 63750;63751;63752;63753;63754;63755;63756;63757;63758;63759;63760;63761;63762;63763;63764;63765;63766;63767;63768;63769;63770;63771;63772;63773;63774;63775;63776;63777;63778;63779;63780;63781;63782;63783;63784;63785;63786;63787;63788;63789;63790;63791;63792;63793 38863;38864;38865;38866;38867;38868;38869;38870;38871;38872;38873;38874;38875;38876;38877;38878;38879;38880;38881;38882;38883;38884;38885;38886;38887;38888;38889;38890;38891;38892;38893;38894;38895;38896;38897;38898;38899;38900;38901;38902;38903;38904;38905;38906;38907;38908;38909;38910;38911;38912;38913;38914;38915;38916;38917;38918;38919;38920;38921;38922;38923 38885 57 DITLAMDCAASEFYKDGK Unmodified 2033.9074 0.90742811 270 P0A6P9 eno Enolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.689 44.892 3 2.015E-05 16094 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 85.636 83.719 21368000 0 0 0 3751400 3637700 3338000 0 0 0 4079800 0 4220400 0 0 0 0 0 0 0 0 0 0 2341000 0 3355 270 3260 63794;63795;63796;63797;63798;63799 38924;38925;38926 38925 3 DITLTSTCEHHFVTIDGK Unmodified 2072.9837 0.98370459 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 2 2 2 2 2 2 2 2 2 3 3 2 3 2 3 2 2 2 29.986 28.435 2;3;4 1.7699E-45 13121 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 273.3 256.19 1252200000 78724000 70435000 70306000 11916000 10323000 10864000 113490000 121710000 109040000 17050000 13379000 14695000 38993000 167210000 35616000 0 0 0 203550000 68933000 67077000 10239000 9232600 9397200 3356 279 3261 63800;63801;63802;63803;63804;63805;63806;63807;63808;63809;63810;63811;63812;63813;63814;63815;63816;63817;63818;63819;63820;63821;63822;63823;63824;63825;63826;63827;63828;63829;63830;63831;63832;63833;63834;63835;63836;63837;63838;63839;63840;63841;63842;63843;63844;63845;63846 38927;38928;38929;38930;38931;38932;38933;38934;38935;38936;38937;38938;38939;38940;38941;38942;38943;38944;38945;38946;38947;38948;38949;38950;38951;38952;38953;38954;38955;38956;38957;38958 38950 32 DITNAWQLR Unmodified 1115.5724 0.57235688 206 P09155 rnd Ribonuclease D yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 38.7 37.063 2 0.0030013 17901 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.833 59.579 33408000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10535000 11189000 11684000 0 0 0 3357 206 3262 63847;63848;63849 38959;38960 38960 0 DITVVMVAPK Unmodified 1071.5998 0.59981719 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 1 37.354 35.73 1;2 0.0019852 17375 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 81.548 75.766 136640000 30881000 37412000 34154000 0 0 0 18534000 12049000 0 0 0 0 3607200 0 0 0 0 0 0 0 0 0 0 0 3358 119 3263 63850;63851;63852;63853;63854;63855;63856;63857 38961;38962;38963;38964;38965;38966 38962 5 DIVAGIASEEEDEIVVFEGCEHAK Unmodified 2645.2167 0.21667724 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.434 50.185 3 2.1138E-15 24816 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.93 147.92 382450000 15536000 17209000 13797000 4702000 3073400 1609500 23912000 24905000 24217000 0 0 0 41426000 34638000 37788000 0 0 0 48197000 44663000 46778000 0 0 0 3359 499 3264 63858;63859;63860;63861;63862;63863;63864;63865;63866;63867;63868;63869;63870;63871;63872 38967;38968;38969;38970;38971;38972;38973;38974;38975;38976;38977 38967 11 DIVDPATPYPGDK Unmodified 1386.6667 0.66671078 964 P0AFW0 rfaH Transcription antitermination protein RfaH yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.214 29.011 2 1.2717E-05 10419 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 115.18 97.311 80872000 9404300 8708700 8435500 0 0 0 6031800 4758400 5281300 0 768140 668820 3935800 3216700 2594600 3850800 1889600 2776900 6818900 4862300 6869600 0 0 0 3360 964 3265 63873;63874;63875;63876;63877;63878;63879;63880;63881;63882;63883;63884;63885;63886;63887;63888;63889 38978;38979;38980;38981;38982;38983;38984;38985 38978 7 DIVGYVR Unmodified 820.4443 0.44430282 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.708 24.63 2 0.00547 8811 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 99.511 84.29 590400000 37158000 36227000 30935000 22372000 17543000 20401000 31757000 29134000 27510000 34220000 37414000 38530000 27274000 0 0 7597700 5519400 6558200 0 0 0 57211000 61116000 61923000 3361 215 3266 63890;63891;63892;63893;63894;63895;63896;63897;63898;63899;63900;63901;63902;63903;63904;63905;63906;63907;63908 38986;38987;38988;38989;38990;38991;38992;38993;38994;38995;38996;38997;38998 38991 13 DIVGYVREATPR Unmodified 1374.7256 0.72556306 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 34.522 32.91 3 0.16768 16189 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 18.577 14.164 58902000 0 0 0 0 0 0 18221000 19564000 18659000 0 0 0 1119700 1337400 0 0 0 0 0 0 0 0 0 0 3362 215 3267 63909;63910;63911;63912;63913 38999 38999 1 DIVHCLIAPGTPLSEK Unmodified 1748.9131 0.91310583 736 P0ACM2 rspR HTH-type transcriptional repressor RspR yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 41.564 39.912 3 0.0048902 18682 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 38.261 33.156 73683000 16674000 14084000 11561000 0 0 0 0 5331200 4775500 0 0 0 0 6502600 6844900 0 0 0 0 7909800 0 0 0 0 3363 736 3268 63914;63915;63916;63917;63918;63919;63920;63921 39000 39000 1 DIVLAIIGK Unmodified 940.59572 0.59571809 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.274 47.915 2 0.0050505 22389 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 75.854 57.819 213020000 56936000 54442000 46132000 786120 1186200 1040200 4883100 7776100 5300200 0 0 0 4776300 4831300 5671100 0 0 0 6386100 5378600 6036500 0 0 1458300 3364 225 3269 63922;63923;63924;63925;63926;63927;63928;63929;63930;63931;63932;63933;63934;63935;63936;63937 39001;39002;39003;39004;39005;39006;39007;39008;39009;39010 39009 10 DIVTDSR Unmodified 804.39775 0.39774656 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.678 14.343 2 0.0051918 4539 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.67 77.634 434340000 17175000 15886000 13593000 12254000 10733000 10829000 40065000 38330000 38829000 0 20324000 0 0 23294000 31309000 0 3439900 2742600 39911000 36253000 36893000 14927000 14368000 13187000 3365 648 3270 63938;63939;63940;63941;63942;63943;63944;63945;63946;63947;63948;63949;63950;63951;63952;63953;63954;63955;63956;63957 39011;39012;39013;39014;39015;39016;39017 39012 7 DIVYFHSLFWPAMLEGSNFR Unmodified 2428.1674 0.16742304 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 55.372 53.898 2;3 1.8951E-23 26560 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 189.87 188.44 646360000 41354000 43018000 45698000 0 0 0 52681000 39043000 51248000 0 0 0 53215000 57764000 51483000 0 0 0 69204000 75211000 66436000 0 0 0 3366 60 3271 63958;63959;63960;63961;63962;63963;63964;63965;63966;63967;63968;63969;63970;63971;63972;63973;63974;63975;63976;63977;63978;63979;63980 39018;39019;39020;39021;39022;39023;39024;39025;39026;39027;39028;39029 39024 10 DIWPSAQEIAR Unmodified 1284.6463 0.64625011 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 39.822 38.254 2 7.9009E-05 18552 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.86 118.08 811450000 232510000 229850000 208890000 0 0 0 0 0 40522000 0 0 0 11012000 9463700 9533700 0 0 0 24090000 22362000 23219000 0 0 0 3367 1254 3272 63981;63982;63983;63984;63985;63986;63987;63988;63989;63990 39030 39030 1 DIWVWTGYK Unmodified 1166.576 0.57604528 541 P0A9N8 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 50.538 49.109 2 0.0031935 23790 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 82.452 78.768 48591000 0 0 0 0 0 0 4628800 5272500 3648100 0 0 0 6359700 4929100 5038500 0 0 0 6563200 5244900 6906200 0 0 0 3368 541 3273 63991;63992;63993;63994;63995;63996;63997;63998;63999 39031 39031 1 DIYDIAEK Unmodified 965.47058 0.47057715 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.298 27.802 2 0.0024505 13129 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 100.39 94.003 611300000 16489000 17090000 17937000 6217500 6076000 6680900 74410000 67831000 67770000 50162000 38842000 35906000 22684000 18790000 18307000 0 0 0 35438000 41327000 35923000 12008000 11110000 10299000 3369 122 3274 64000;64001;64002;64003;64004;64005;64006;64007;64008;64009;64010;64011;64012;64013;64014;64015;64016;64017;64018;64019;64020 39032;39033;39034;39035;39036;39037;39038;39039;39040;39041;39042;39043;39044;39045;39046;39047 39035 16 DIYQMPGIAETVNFDHIR Unmodified 2118.0204 0.020424451 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 49.292 47.865 2;3 9.743E-14 23394 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 169.62 164.82 40146000 7405700 9689200 7601200 0 0 0 5923800 5805200 0 0 0 0 0 0 3720900 0 0 0 0 0 0 0 0 0 3370 1557 3275 64021;64022;64023;64024;64025;64026;64027 39048;39049 39049 2 DKATGEMK Unmodified 878.41677 0.41676744 1010 P0AGE0 ssb Single-stranded DNA-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.3765 6.2257 2 0.0061596 1112 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 91.064 64.841 283410000 66167000 46782000 39339000 0 0 0 18741000 19373000 16061000 0 0 0 10883000 9178600 9936500 0 0 0 14160000 17473000 15311000 0 0 0 3371 1010 3276 64028;64029;64030;64031;64032;64033;64034;64035;64036;64037;64038;64039 39050;39051;39052;39053;39054;39055 39052 6 DKDALTR Unmodified 817.42938 0.42938104 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.9577 9.7232 2 5.1326E-07 2517 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.51 97.342 656930000 0 0 0 2187200 3094700 1851400 31775000 28545000 31738000 27214000 17552000 22865000 77495000 85637000 41351000 0 0 0 142550000 0 143080000 0 0 0 3372 899 3277 64040;64041;64042;64043;64044;64045;64046;64047;64048;64049;64050;64051;64052;64053;64054;64055;64056;64057 39056;39057;39058;39059;39060;39061;39062;39063;39064;39065;39066;39067;39068;39069;39070;39071;39072;39073 39063 18 DKDSLASK Unmodified 862.43961 0.43961137 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 1 5.6354 6.5419 2 0.0026803 1268 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.9 86.603 537520000 26107000 23340000 22837000 1905100 1794200 1498200 54287000 0 50107000 0 0 0 50126000 44727000 48079000 0 0 0 69809000 70702000 72205000 0 0 0 3373 1491 3278 64058;64059;64060;64061;64062;64063;64064;64065;64066;64067;64068;64069;64070;64071;64072 39074;39075;39076;39077;39078;39079;39080;39081 39076 8 DKEISEDDDR Unmodified 1220.5157 0.51568944 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 10.47 11.265 2 3.178E-06 2636 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 160.59 157.58 89779000 11272000 0 10347000 0 0 0 12895000 11448000 9515400 0 0 0 19618000 14684000 0 0 0 0 0 0 0 0 0 0 3374 385 3279 64073;64074;64075;64076;64077;64078;64079 39082;39083;39084;39085;39086;39087 39082 5 DKEISEDDDRR Unmodified 1376.6168 0.61680047 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 1 2 3 4 4 2 4 2 2 2 8.2665 9.116 2;3 5.2546E-19 1229 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 230.41 218.56 2457000000 83337000 53405000 79208000 0 0 1057500 363950000 357040000 343260000 0 0 0 40456000 42413000 42768000 0 0 0 200200000 285080000 564860000 0 0 0 3375 385 3280 64080;64081;64082;64083;64084;64085;64086;64087;64088;64089;64090;64091;64092;64093;64094;64095;64096;64097;64098;64099;64100;64101;64102;64103;64104;64105;64106;64107;64108;64109;64110;64111;64112;64113;64114 39088;39089;39090;39091;39092;39093;39094;39095;39096;39097;39098;39099;39100;39101;39102;39103;39104;39105;39106;39107;39108;39109;39110;39111;39112;39113;39114;39115;39116;39117;39118;39119;39120;39121;39122;39123;39124;39125;39126;39127;39128;39129;39130 39094 43 DKETYTGVAK Unmodified 1110.5557 0.55570376 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 11.299 12.034 2;3 1.0572E-07 2935 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 179.8 154.55 15831000000 161770000 162490000 140060000 0 0 0 1262500000 1373100000 1189300000 0 0 0 1476100000 1439300000 1339600000 0 1971000 4954800 2625500000 2255600000 2398400000 0 0 0 3376 993 3281 64115;64116;64117;64118;64119;64120;64121;64122;64123;64124;64125;64126;64127;64128;64129;64130;64131;64132;64133;64134;64135;64136;64137;64138;64139;64140;64141 39131;39132;39133;39134;39135;39136;39137;39138;39139;39140;39141;39142;39143;39144;39145;39146;39147;39148;39149 39144 19 DKFDLAFANDPDYDR Unmodified 1800.7955 0.79549312 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 1 2 2 2 2 2 2 37.502 35.794 2;3 1.6782E-27 17219 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 245.85 240.01 1686500000 50192000 142580000 145060000 595250 0 0 194880000 202270000 173890000 0 0 1072100 121070000 120020000 112630000 0 0 0 134510000 147010000 140710000 0 0 0 3377 1450 3282 64142;64143;64144;64145;64146;64147;64148;64149;64150;64151;64152;64153;64154;64155;64156;64157;64158;64159;64160;64161;64162;64163;64164;64165;64166 39150;39151;39152;39153;39154;39155;39156;39157;39158;39159;39160;39161;39162;39163;39164;39165;39166;39167;39168;39169;39170;39171;39172 39165 23 DKFPQTELFR Unmodified 1279.6561 0.65608651 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 30.652 29.275 2;3 0.00020422 13628 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.87 96.826 604840000 62708000 59609000 52596000 0 0 0 56239000 57502000 54142000 0 0 0 44797000 25929000 26590000 0 0 0 49075000 58891000 56759000 0 0 0 3378 1132 3283 64167;64168;64169;64170;64171;64172;64173;64174;64175;64176;64177;64178;64179;64180;64181;64182;64183;64184;64185;64186;64187;64188 39173;39174;39175;39176;39177;39178;39179;39180;39181;39182;39183;39184;39185;39186;39187;39188;39189;39190;39191;39192 39186 20 DKGEAENEAKPIDVK Unmodified 1641.821 0.82097959 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 12.093 12.713 2;3 2.382E-36 3588 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 314.45 299.88 1498600000 39517000 44889000 39410000 21015000 19946000 24987000 81187000 89245000 93737000 72669000 60726000 54942000 112440000 98417000 81272000 16475000 11055000 12475000 130150000 130160000 121300000 49859000 42194000 50548000 3379 930 3284 64189;64190;64191;64192;64193;64194;64195;64196;64197;64198;64199;64200;64201;64202;64203;64204;64205;64206;64207;64208;64209;64210;64211;64212;64213;64214;64215;64216;64217;64218;64219;64220;64221;64222;64223;64224;64225;64226;64227;64228;64229;64230;64231;64232;64233;64234;64235 39193;39194;39195;39196;39197;39198;39199;39200;39201;39202;39203;39204;39205;39206;39207;39208;39209;39210;39211;39212;39213;39214;39215;39216;39217;39218;39219;39220 39211 28 DKGEFFAK Unmodified 940.46543 0.46543219 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.53 16.104 2 0.001483 4683 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 120.15 104 1601200000 186960000 196970000 210000000 6056500 5729400 6288500 154050000 162160000 158860000 11254000 9422600 7715900 85466000 75707000 80856000 2110000 0 1509600 57566000 66364000 67220000 15410000 17468000 16089000 3380 1653 3285 64236;64237;64238;64239;64240;64241;64242;64243;64244;64245;64246;64247;64248;64249;64250;64251;64252;64253;64254;64255;64256;64257;64258 39221;39222;39223;39224;39225;39226;39227;39228;39229;39230;39231 39221 11 DKGLILLSCGPYYNVLR Unmodified 1980.0503 0.050268017 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 1 By MS/MS 1 49.003 47.65 3 2.6925E-08 23456 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.16 112.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3381 1194 3286 64259 39232 39232 1 DKGLLTAFAEGK Unmodified 1248.6714 0.67140222 37 P00582 polA DNA polymerase I yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 2 2 2 1 1 1 1 2 1 2 2 2 2 2 2 1 32.325 31.226 2;3 5.0763E-06 10911 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 138.63 116.63 320670000 30011000 10980000 24087000 1752300 0 0 21463000 17906000 15434000 0 2164200 4578400 20495000 8136000 19378000 23681000 18235000 19026000 33629000 32781000 16935000 0 0 0 3382 37 3287 64260;64261;64262;64263;64264;64265;64266;64267;64268;64269;64270;64271;64272;64273;64274;64275;64276;64277;64278;64279;64280;64281;64282;64283;64284;64285;64286;64287;64288 39233;39234;39235;39236;39237;39238;39239;39240;39241 39233 8 DKHMTADAAAHEVIEGQASALEELDDEYLK Unmodified 3298.53 0.52996588 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 1 1 3 3 3 3 3 3 47.315 45.894 3;4;5 1.4424E-31 22813 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 188.15 187.13 947210000 66199000 51886000 46507000 0 0 0 83752000 84034000 80168000 0 783870 1330800 87991000 75658000 75142000 0 0 0 110900000 91152000 91706000 0 0 0 3383 192 3288 64289;64290;64291;64292;64293;64294;64295;64296;64297;64298;64299;64300;64301;64302;64303;64304;64305;64306;64307;64308;64309;64310;64311;64312;64313;64314;64315;64316;64317;64318;64319;64320;64321;64322;64323;64324;64325;64326 39242;39243;39244;39245;39246;39247;39248;39249;39250;39251;39252;39253;39254;39255;39256 39243 15 DKHMTADAAAHEVIEGQASALEELDDEYLKER Unmodified 3583.6737 0.67367001 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.085 43.323 5 0.0003513 17444 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 62.833 62.404 137650000 0 0 0 2179700 2850500 3544800 19626000 14407000 0 4286400 4061400 3310700 0 12055000 11464000 0 0 0 19636000 20212000 15863000 4155100 0 0 3384 192 3289 64327;64328;64329;64330;64331;64332;64333;64334;64335;64336;64337;64338;64339;64340 39257;39258;39259;39260;39261 39258 5 DKIGTIR Unmodified 801.47085 0.47085192 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 1 By MS/MS 1 11.339 12.344 2 0.013234 2467 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 106.42 76.345 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3385 1909 3290 64341 39262 39262 1 DKIPAEQWLDKR Unmodified 1497.794 0.79397698 1970 Q46948 yajL Probable protein deglycase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.417 24.328 3 3.8619E-05 11150 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.772 79.733 204130000 24633000 22217000 19871000 0 0 0 26807000 23455000 23338000 0 0 0 6977400 9177600 6242400 0 0 0 15314000 12127000 13974000 0 0 0 3386 1970 3291 64342;64343;64344;64345;64346;64347;64348;64349;64350;64351;64352;64353 39263;39264;39265;39266;39267;39268;39269;39270;39271;39272;39273 39264 8 DKISNGNWQSHIGR Unmodified 1610.7914 0.79135121 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 16.38 16.535 3 3.1321E-06 4625 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 97.297 93.793 67028000 0 0 0 0 0 0 0 0 0 7741100 6149800 0 0 0 0 0 2761100 2307700 0 0 2731300 15300000 15479000 14558000 3387 215 3292 64354;64355;64356;64357;64358;64359;64360;64361 39274;39275;39276;39277 39275 4 DKLAQFTSLQADLENGVNLEQTIR Unmodified 2702.3875 0.38752281 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.895 50.863 3 1.1656E-71 25128 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 271.66 267.23 917630000 36328000 35208000 31434000 0 0 10181000 115640000 146520000 0 0 0 14113000 83823000 84245000 97289000 7448100 10547000 10903000 84255000 67954000 71395000 10343000 0 0 3388 212 3293 64362;64363;64364;64365;64366;64367;64368;64369;64370;64371;64372;64373;64374;64375;64376;64377;64378 39278;39279;39280;39281;39282;39283;39284;39285;39286;39287 39279 10 DKLATQCGLDVAPR Unmodified 1542.7824 0.78242601 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 2 2 2 21.502 21.621 2;3 1.3246E-08 8838 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 150.22 134.67 158560000 7711000 9199000 4433500 0 0 352400 0 10778000 9676000 0 0 0 18184000 18141000 16536000 0 0 0 22791000 18569000 22187000 0 0 0 3389 180 3294 64379;64380;64381;64382;64383;64384;64385;64386;64387;64388;64389;64390;64391;64392;64393;64394;64395;64396;64397;64398 39288;39289;39290;39291;39292;39293;39294 39290 7 DKLDQLSQK Unmodified 1073.5717 0.57168818 1828 P76176 ydgD Uncharacterized serine protease YdgD yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.653 13.257 2 0.00079246 3987 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.71 89.089 20014000 4777900 4486900 0 1991800 0 990980 3981800 0 0 1218700 1615300 950360 0 0 0 0 0 0 0 0 0 0 0 0 3390 1828 3295 64399;64400;64401;64402;64403;64404;64405;64406;64407 39295;39296 39295 2 DKLEAMEGVQFK Unmodified 1393.6912 0.69115139 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.431 27.183 3 0.12135 12426 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 35.077 27.947 69778000 6995100 3875400 4577900 0 0 0 4846500 6561500 4955400 0 0 0 4455300 5442900 5351600 0 0 0 5314100 9768300 7633800 0 0 0 3391 1197 3296 64408;64409;64410;64411;64412;64413;64414;64415;64416;64417;64418;64419 39297 39297 0 DKLEPYFTEGR Unmodified 1353.6565 0.65648044 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 25.701 24.547 2;3 9.7622E-06 10509 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 135.99 131.47 3306300000 323330000 306700000 241920000 6864400 7304100 6716500 259540000 246120000 277410000 22252000 21229000 21881000 209470000 198010000 192480000 0 2656400 2284900 311180000 316980000 314380000 5541000 3699500 8375700 3392 62 3297 64420;64421;64422;64423;64424;64425;64426;64427;64428;64429;64430;64431;64432;64433;64434;64435;64436;64437;64438;64439;64440;64441;64442;64443;64444;64445;64446;64447;64448;64449;64450;64451;64452;64453;64454;64455;64456;64457;64458;64459;64460;64461;64462 39298;39299;39300;39301;39302;39303;39304;39305;39306;39307;39308;39309;39310;39311;39312;39313;39314;39315;39316;39317;39318;39319;39320;39321;39322;39323;39324;39325;39326 39323 23 DKLFNLPFNMNTFHQMWGVK Unmodified 2466.1977 0.19767731 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 53.433 51.992 3 0.0028015 25483 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 55.453 52.529 94701000 5737600 0 7873600 0 0 0 10364000 10511000 1854100 0 0 0 8963100 14623000 8599000 0 0 0 0 15162000 11014000 0 0 0 3393 1491 3298 64463;64464;64465;64466;64467;64468;64469;64470;64471;64472 39327 39327 1 DKLHQSGYSLSGGQQQR Unmodified 1887.9187 0.91873657 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 3 3 3 3 3 2 2 2 1 1 3 3 3 3 3 3 12.663 13.247 2;3;4 8.5727E-42 3299 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 337.22 327.17 1431700000 0 0 0 2415700 3016800 2026900 86853000 83154000 77285000 176850000 127850000 124080000 61847000 32159000 35988000 23772000 13880000 11951000 106980000 106350000 95163000 98548000 80407000 81107000 3394 594 3299 64473;64474;64475;64476;64477;64478;64479;64480;64481;64482;64483;64484;64485;64486;64487;64488;64489;64490;64491;64492;64493;64494;64495;64496;64497;64498;64499;64500;64501;64502;64503;64504;64505;64506;64507;64508;64509;64510;64511;64512;64513;64514;64515;64516;64517;64518;64519;64520;64521;64522 39328;39329;39330;39331;39332;39333;39334;39335;39336;39337;39338;39339;39340;39341;39342;39343;39344;39345;39346;39347;39348;39349;39350;39351;39352;39353;39354 39332 27 DKLIVVTGLSGSGK Unmodified 1372.7926 0.79257999 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.105 27.046 2 1.4178E-07 9118 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 135.6 131.71 36047000 3357100 0 0 788700 1038400 963580 0 0 0 2553900 0 0 2532600 0 0 11789000 4505100 4845000 2113900 0 0 0 0 1559600 3395 222 3300 64523;64524;64525;64526;64527;64528;64529;64530;64531;64532;64533 39355;39356;39357 39355 3 DKLMNLAR Unmodified 959.52224 0.52223557 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.646 18.104 2 0.0016402 4904 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 116.3 105.88 129170000 4773400 5922600 5772900 4748800 5838100 5172900 5632200 6336200 2229400 4583700 3942900 4316800 3255200 3209300 4087000 22226000 15289000 0 4215600 5158200 4558200 2635400 2067100 3203400 3396 570 3301 64534;64535;64536;64537;64538;64539;64540;64541;64542;64543;64544;64545;64546;64547;64548;64549;64550;64551;64552;64553;64554;64555;64556 39358;39359;39360;39361;39362 39360 5 DKLSNPVR Unmodified 927.51378 0.51377937 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.665 12.459 2 8.3519E-05 3329 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 171.38 154.02 2475800000 205930000 182870000 205010000 1590200 2095700 1789000 301140000 328650000 320060000 2114700 2266000 0 141320000 130980000 123850000 0 0 0 162720000 175380000 188070000 0 0 0 3397 321 3302 64557;64558;64559;64560;64561;64562;64563;64564;64565;64566;64567;64568;64569;64570;64571;64572;64573 39363;39364;39365;39366;39367;39368;39369;39370;39371;39372;39373;39374;39375;39376 39373 14 DKLVSSEVK Unmodified 1003.555 0.55497548 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.005 12.65 2 0.00056053 2905 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 115.71 101.56 490570000 0 0 0 3762200 3395900 2627100 52674000 50546000 46839000 15088000 12422000 10531000 42499000 37764000 36905000 4813600 0 3610500 48020000 55663000 51417000 0 5725900 6270800 3398 883 3303 64574;64575;64576;64577;64578;64579;64580;64581;64582;64583;64584;64585;64586;64587;64588;64589;64590;64591;64592 39377;39378;39379;39380;39381;39382;39383;39384;39385;39386 39379 10 DKMDAWLSGPNANK Unmodified 1545.7246 0.72457678 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.863 26.715 2;3 2.87E-14 12077 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 225.15 218.85 1580200000 459970000 446030000 375080000 0 0 0 26311000 32272000 26185000 0 0 0 29247000 30288000 23104000 0 0 0 37222000 42372000 52087000 0 0 0 3399 852 3304 64593;64594;64595;64596;64597;64598;64599;64600;64601;64602;64603;64604;64605;64606;64607;64608;64609;64610;64611;64612;64613;64614;64615;64616 39387;39388;39389;39390;39391;39392;39393;39394;39395;39396;39397;39398 39392 11 DKNDEIVSMLGASYFR Unmodified 1843.8774 0.87744861 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1 2 2 2 2 2 2 2 1 1 1 1 1 1 1 2 2 1 2 49.247 47.933 2;3 8.9936E-31 23154 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 295.83 287.72 866140000 68381000 59718000 87200000 4003200 3210700 3303800 78024000 77050000 72053000 25678000 21910000 22711000 45434000 33183000 34049000 4162000 4234800 4155300 51566000 44104000 69717000 20480000 14019000 17797000 3400 1408 3305 64617;64618;64619;64620;64621;64622;64623;64624;64625;64626;64627;64628;64629;64630;64631;64632;64633;64634;64635;64636;64637;64638;64639;64640;64641;64642;64643;64644;64645;64646;64647;64648;64649;64650;64651;64652 39399;39400;39401;39402;39403;39404;39405;39406;39407;39408;39409;39410;39411;39412;39413;39414;39415;39416;39417;39418;39419;39420;39421;39422;39423;39424;39425 39416 27 DKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDK Unmodified 4062.8973 0.89728071 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 53.337 51.932 4 1.9162E-07 25685 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.585 72.488 85655000 18701000 17947000 18701000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13700000 10538000 6068800 0 0 0 3401 65 3306 64653;64654;64655;64656;64657;64658 39426;39427 39426 2 DKNDSFR Unmodified 880.40389 0.40389457 657 P0ABH7 gltA Citrate synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 10.003 10.835 2 0.00040319 2240 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 163.34 141.79 873520000 373440000 307480000 336850 0 0 0 0 0 0 0 0 0 24101000 27348000 18585000 0 0 0 0 122220000 0 0 0 0 3402 657 3307 64659;64660;64661;64662;64663;64664;64665 39428;39429;39430 39428 3 DKNFDNIQK Unmodified 1120.5513 0.55128709 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 12.317 13.087 2;3 1.4091E-07 3026 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 187.22 169.83 492660000 0 0 0 0 3550100 3296300 35116000 31693000 39257000 0 0 0 31460000 33157000 0 0 0 0 53241000 44127000 53893000 56563000 54461000 52850000 3403 1067 3308 64666;64667;64668;64669;64670;64671;64672;64673;64674;64675;64676;64677;64678;64679;64680;64681 39431;39432;39433;39434;39435;39436 39433 6 DKNQRPGR Unmodified 969.51043 0.51042533 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 6.4211 7.0467 2 0.0030808 1466 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 124.83 124.83 252030000 28335000 32548000 23070000 274090 248590 0 2559900 2035500 407330 7060800 8861000 5390100 14675000 15238000 12527000 14784000 32894000 7622400 12307000 14096000 11670000 2648800 2777400 0 3404 290 3309 64682;64683;64684;64685;64686;64687;64688;64689;64690;64691;64692;64693;64694;64695;64696;64697;64698;64699;64700;64701;64702;64703;64704;64705 39437;39438;39439;39440;39441;39442;39443;39444;39445;39446;39447 39437 11 DKNVAVFDTAFHQTMPEESYLYALPYNLYK Unmodified 3566.7068 0.70680804 224 P0A6A3 ackA Acetate kinase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 53.575 52.131 3;4 2.3583E-11 25543 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 116.34 116.06 679250000 46668000 40348000 30126000 0 0 0 79827000 69229000 72638000 0 0 0 60629000 34020000 50293000 0 0 0 65362000 70350000 59763000 0 0 0 3405 224 3310 64706;64707;64708;64709;64710;64711;64712;64713;64714;64715;64716;64717;64718;64719;64720;64721;64722;64723;64724;64725;64726;64727;64728 39448;39449;39450;39451;39452;39453;39454;39455;39456;39457;39458 39452 10 DKNVLLVDDSIVR Unmodified 1484.8199 0.81985738 978 P0AG16 purF Amidophosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 34.708 33.301 2;3 9.9391E-05 15960 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.653 83.722 278470000 69294000 70361000 66072000 0 0 0 5615800 8579300 7114400 0 0 0 7205800 6893400 7979400 0 0 0 8629000 10647000 10076000 0 0 0 3406 978 3311 64729;64730;64731;64732;64733;64734;64735;64736;64737;64738;64739;64740;64741;64742;64743 39459;39460;39461;39462;39463;39464;39465;39466;39467 39463 8 DKPEDAVLDVQGIATVTPAIVQACTQDK Unmodified 2981.5016 0.50156629 884 P0AES9 hdeA Acid stress chaperone HdeA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 4 1 2 2 5 5 5 1 2 2 3 3 4 3 3 3 51.083 49.759 2;3;4 1.6733E-93 23268 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 397 393.85 34224000000 5187000000 4815400000 4423400000 6404900 6484000 7408200 5069200000 5002100000 5024300000 9235500 11018000 10889000 960540000 1038000000 1018200000 0 0 0 578470000 533250000 522980000 0 0 0 3407 884 3312 64744;64745;64746;64747;64748;64749;64750;64751;64752;64753;64754;64755;64756;64757;64758;64759;64760;64761;64762;64763;64764;64765;64766;64767;64768;64769;64770;64771;64772;64773;64774;64775;64776;64777;64778;64779;64780;64781;64782;64783;64784;64785;64786;64787;64788;64789;64790;64791;64792;64793;64794;64795;64796;64797;64798;64799;64800 39468;39469;39470;39471;39472;39473;39474;39475;39476;39477;39478;39479;39480;39481;39482;39483;39484;39485;39486;39487;39488;39489;39490;39491;39492;39493;39494;39495;39496;39497;39498;39499;39500;39501;39502;39503;39504;39505;39506;39507;39508;39509;39510;39511;39512;39513;39514;39515;39516;39517;39518;39519;39520;39521;39522;39523;39524;39525;39526;39527;39528 39524 61 DKPLGAVALK Unmodified 1010.6124 0.61243078 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.523 19.018 2 0.0029504 7189 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 83.168 64.392 5830900000 116120000 108730000 104610000 854470 1290900 1873500 599630000 515380000 621110000 605580 0 0 503680000 444990000 345900000 0 0 0 795310000 871950000 794590000 2359300 0 1952300 3408 895 3313 64801;64802;64803;64804;64805;64806;64807;64808;64809;64810;64811;64812;64813;64814;64815;64816;64817;64818 39529;39530;39531;39532;39533;39534;39535;39536;39537;39538;39539 39531 10 DKPSLIICR Unmodified 1100.6012 0.60121417 1423 P33570 tktB Transketolase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 1 1 2 1 1 20.72 21.118 2;3 0.00027803 8229 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 106.6 98.556 1547900000 388180000 410220000 357660000 0 0 0 98065000 116000000 79164000 0 0 0 17206000 11453000 12134000 0 0 0 22666000 14650000 20509000 0 0 0 3409 1423 3314 64819;64820;64821;64822;64823;64824;64825;64826;64827;64828;64829;64830;64831;64832;64833;64834;64835;64836 39540;39541;39542;39543;39544;39545;39546;39547;39548;39549;39550;39551;39552;39553;39554;39555;39556;39557 39552 18 DKPVIVVDGSGMQCQEPANALTK Unmodified 2456.2039 0.20394448 981 P0AG27 yibN Uncharacterized protein YibN yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 32.842 31.355 2;3 1.5673E-15 14863 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 151.42 144.46 683470000 32561000 23657000 31669000 6800000 7285000 8846800 44106000 48305000 40792000 11281000 14990000 13591000 55740000 49841000 49234000 0 2806400 3567200 63615000 71066000 67196000 17472000 9255200 9792600 3410 981 3315 64837;64838;64839;64840;64841;64842;64843;64844;64845;64846;64847;64848;64849;64850;64851;64852;64853;64854;64855;64856;64857;64858;64859;64860;64861;64862;64863;64864;64865;64866;64867;64868;64869 39558;39559;39560;39561;39562;39563;39564;39565;39566;39567;39568;39569;39570;39571;39572;39573;39574;39575;39576;39577;39578;39579;39580;39581 39568 24 DKQDLIFGCEQGVDFVAASFIR Unmodified 2514.2213 0.2213091 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 54.547 53.104 2;3 2.9082E-52 26377 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 306.07 291.84 2512700000 148980000 144450000 150410000 0 0 1608500 260040000 214060000 201320000 0 0 0 267020000 243830000 228250000 0 0 0 212000000 215010000 225700000 0 0 0 3411 771 3316 64870;64871;64872;64873;64874;64875;64876;64877;64878;64879;64880;64881;64882;64883;64884;64885;64886;64887;64888;64889;64890;64891;64892;64893;64894 39582;39583;39584;39585;39586;39587;39588;39589;39590;39591;39592;39593;39594;39595;39596 39589 15 DKSGEINVVIPAAVFDGR Unmodified 1885.9898 0.98977625 1361 P31130 ydeI Uncharacterized protein YdeI yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.478 44.882 3 1.3073E-06 21790 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.381 88.854 58017000 13581000 14978000 11161000 0 0 0 6978600 6275700 5043100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3412 1361 3317 64895;64896;64897;64898;64899;64900 39597 39597 1 DKTTIPDYFAK Unmodified 1297.6554 0.65541781 472 P0A8Y3 yihX Alpha-D-glucose-1-phosphate phosphatase YihX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 28.527 27.332 2;3 0.018513 12616 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 50.484 42.519 359800000 42397000 39194000 34165000 0 0 0 42490000 35720000 33747000 0 0 0 20232000 15635000 17094000 0 448560 0 29266000 26752000 22659000 0 0 0 3413 472 3318 64901;64902;64903;64904;64905;64906;64907;64908;64909;64910;64911;64912;64913;64914;64915;64916;64917;64918;64919;64920;64921;64922;64923;64924;64925 39598;39599;39600;39601;39602 39598 4 DKTYHYYSLPLAAK Unmodified 1668.8512 0.8511575 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.143 25.81 3 3.8393E-09 12111 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.71 122.4 495490000 119160000 114000000 121140000 1361200 876580 0 28921000 25453000 22883000 1308400 1349100 1234600 4795900 5156400 4973000 0 0 0 14014000 15803000 13069000 0 0 0 3414 1254 3319 64926;64927;64928;64929;64930;64931;64932;64933;64934;64935;64936;64937;64938;64939;64940;64941;64942 39603;39604;39605;39606;39607;39608 39603 6 DKVLDAVLK Unmodified 999.59645 0.59644637 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.404 25.376 2 0.061063 11428 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 58.433 41.491 97272000 0 0 0 0 0 0 0 0 0 9512500 8770900 9026800 6603600 6318400 4707500 4403300 2462300 3494900 13679000 10596000 10606000 2363700 1671200 3056100 3415 30 3320 64943;64944;64945;64946;64947;64948;64949;64950;64951;64952;64953;64954;64955;64956;64957 39609;39610 39609 1 DKVLDAVLKELESGK Unmodified 1642.9142 0.91415169 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 2 By matching By matching By MS/MS 1 1 1 46.975 47.03 3 0.075549 17168 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 36.127 31.222 10350000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2173200 2522200 5654600 0 0 0 0 0 0 3416 30 3321 64958;64959;64960 39611 39611 1 DKVSQAFWHEWR Unmodified 1587.7583 0.75826017 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 31.301 29.803 2;3 2.9312E-05 11571 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 115.57 113.64 275430000 0 0 0 3823300 2140700 0 21843000 20046000 27574000 42743000 38921000 34503000 10794000 9751000 8080200 7592400 5253300 6477100 8248400 0 9749400 6479500 6499800 4912500 3417 25 3322 64961;64962;64963;64964;64965;64966;64967;64968;64969;64970;64971;64972;64973;64974;64975;64976;64977;64978;64979;64980 39612;39613;39614;39615;39616;39617;39618;39619;39620 39617 9 DKWAHTSVQDR Unmodified 1341.6426 0.64256171 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 11.449 12.162 3 3.6705E-05 3178 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.281 91.826 324420000 82245000 98318000 78885000 0 0 0 0 64975000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3418 1486 3323 64981;64982;64983;64984 39621;39622 39622 2 DKYEHHLLLK Unmodified 1294.7034 0.70337105 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 2 2 2 2 2 1 1 1 1 2 1 1 2 2 2 13.18 13.757 2;3 3.2819E-06 3591 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 157.24 126.99 619610000 35764000 10833000 9206200 4024500 1798400 0 86125000 76266000 75055000 50593000 41393000 48342000 16666000 17946000 14153000 2340600 0 0 39872000 24102000 25471000 14657000 11108000 13894000 3419 122 3324 64985;64986;64987;64988;64989;64990;64991;64992;64993;64994;64995;64996;64997;64998;64999;65000;65001;65002;65003;65004;65005;65006;65007;65008;65009;65010;65011;65012;65013;65014;65015;65016 39623;39624;39625;39626;39627;39628;39629;39630;39631;39632;39633;39634;39635;39636 39624 14 DKYGLDVELVTFNDYVLPNEALSK Unmodified 2741.38 0.37997781 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 54.473 53.026 3 0.00019263 21343 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 71.06 68.684 91340000 10877000 13419000 11286000 4989300 0 6124300 9089000 5377200 0 0 9524300 10587000 0 0 0 0 0 0 0 0 10068000 0 0 0 3420 1321 3325 65017;65018;65019;65020;65021;65022;65023;65024;65025;65026 39637;39638;39639;39640 39638 4 DLAANPIPVLDGELVGALRPSDAPLTPR Unmodified 2866.5553 0.55525684 1551 P41407 azoR FMN-dependent NADH-azoreductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.794 53.346 3 4.1327E-16 25178 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.63 143.77 638200000 68579000 67886000 65119000 0 0 0 57059000 56584000 63385000 0 0 0 37061000 36858000 32890000 0 0 0 58198000 51313000 43270000 0 0 0 3421 1551 3326 65027;65028;65029;65030;65031;65032;65033;65034;65035;65036;65037;65038 39641;39642;39643;39644;39645;39646;39647;39648;39649;39650 39650 9 DLACLGFSADLVMQSFCHTAAYPK Unmodified 2701.2339 0.2338644 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.866 53.408 3 0.014629 26245 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 52.359 52.057 198080000 0 34474000 35562000 0 0 0 11169000 0 11373000 0 0 0 0 13663000 10815000 0 0 0 28882000 23314000 28828000 0 0 0 3422 1444 3327 65039;65040;65041;65042;65043;65044;65045;65046;65047 39651 39651 0 DLALAYSPGVAAPCLEIEKDPLK Unmodified 2469.2825 0.28251238 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 49.545 48.154 2;3 8.5132E-18 23305 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 186.72 178.18 3735300000 562260000 494390000 485360000 2208700 2470800 2353000 258090000 264520000 221380000 3329800 3474200 0 217450000 205090000 178780000 0 0 0 295240000 285510000 253410000 0 0 0 3423 1872 3328 65048;65049;65050;65051;65052;65053;65054;65055;65056;65057;65058;65059;65060;65061;65062;65063;65064;65065;65066;65067;65068;65069;65070;65071;65072;65073;65074;65075;65076 39652;39653;39654;39655;39656;39657;39658;39659;39660;39661;39662;39663;39664;39665;39666;39667;39668;39669;39670;39671;39672;39673;39674;39675 39663 24 DLALEMANR Unmodified 1031.507 0.50697943 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.673 29.104 2 5.653E-05 13164 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 147.34 104.27 343910000 25140000 22501000 17849000 0 0 0 39523000 37629000 33896000 2161500 1720800 2066900 0 27625000 27689000 0 0 0 29956000 37345000 38811000 0 0 0 3424 1133 3329 65077;65078;65079;65080;65081;65082;65083;65084;65085;65086;65087;65088;65089;65090;65091 39676;39677;39678;39679;39680;39681;39682;39683;39684;39685 39684 10 DLALIEINPLVITK Unmodified 1550.9283 0.92834519 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.326 53.877 2 6.0958E-11 26842 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.6 159.37 6724400000 808250000 823260000 793930000 7887200 6536000 6849500 248000000 217950000 201600000 6080200 0 4357300 376910000 444630000 354370000 0 0 0 836790000 789690000 775380000 6773000 7201700 7971600 3425 392 3330 65092;65093;65094;65095;65096;65097;65098;65099;65100;65101;65102;65103;65104;65105;65106;65107;65108;65109;65110;65111 39686;39687;39688;39689;39690;39691;39692;39693;39694;39695;39696;39697;39698 39693 13 DLALLGR Unmodified 756.44939 0.4493882 336 P0A7E3 pyrE Orotate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 34.396 32.913 2 0.0028253 15690 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.54 65.925 50175000 9989200 9663900 7131500 0 0 0 2406300 3383500 2820700 0 0 0 0 2066200 0 0 0 0 4311000 3688200 4714900 0 0 0 3426 336 3331 65112;65113;65114;65115;65116;65117;65118;65119;65120;65121 39699;39700 39699 2 DLALNQAMIPLGSCTMK Unmodified 1861.91 0.91001107 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 50.528 49.079 2;3 2.2423E-24 24314 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 215.51 200.12 1166700000 83112000 60160000 67548000 3679900 3522000 3709400 87002000 79479000 81331000 7504100 7508600 5853200 105200000 93841000 91915000 0 0 0 130740000 123130000 115200000 4223900 6356400 5714800 3427 1409 3332 65122;65123;65124;65125;65126;65127;65128;65129;65130;65131;65132;65133;65134;65135;65136;65137;65138;65139;65140;65141;65142;65143;65144;65145;65146;65147;65148;65149;65150;65151;65152;65153;65154;65155;65156;65157 39701;39702;39703;39704;39705;39706;39707;39708;39709;39710;39711;39712;39713;39714;39715;39716;39717;39718;39719;39720;39721;39722;39723 39704 23 DLANAIR Unmodified 771.4239 0.42390173 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.625 20.937 2 0.0023035 8208 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.67 55.026 1049100000 168880000 171820000 142180000 0 968900 834750 139520000 123270000 129230000 0 1696600 1469400 27375000 21601000 17051000 0 0 0 34973000 36003000 32206000 0 0 0 3428 1423 3333 65158;65159;65160;65161;65162;65163;65164;65165;65166;65167;65168;65169;65170;65171;65172;65173 39724;39725;39726;39727;39728;39729;39730;39731 39730 4 DLANDGYR Unmodified 922.41446 0.41445926 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.339 15.899 2 0.00060158 3993 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 131.04 124.65 3497500000 342170000 387820000 321830000 29688000 29837000 24928000 167710000 164200000 155050000 50142000 49272000 39425000 209580000 157440000 161700000 24622000 24295000 24634000 342780000 337210000 329800000 40688000 43729000 38987000 3429 1621 3334 65174;65175;65176;65177;65178;65179;65180;65181;65182;65183;65184;65185;65186;65187;65188;65189;65190;65191;65192;65193;65194;65195;65196;65197 39732;39733;39734;39735;39736;39737;39738;39739;39740;39741;39742;39743;39744;39745;39746;39747;39748;39749 39743 18 DLAQCVEISNQYGPEHLIIQTR Unmodified 2583.2751 0.27513559 140 P06988 hisD Histidinol dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 45.353 43.901 3 2.9179E-28 21646 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 190.79 188.66 252100000 38811000 0 39413000 0 0 0 20680000 22600000 17559000 0 0 0 15644000 19391000 16741000 0 0 0 23563000 21824000 15869000 0 0 0 3430 140 3335 65198;65199;65200;65201;65202;65203;65204;65205;65206;65207;65208 39750;39751;39752;39753;39754;39755;39756;39757;39758 39752 9 DLATMTPDQACR Unmodified 1377.6017 0.60168445 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.323 24.259 2 7.2576E-17 10924 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 211.52 211.52 159870000 12063000 11050000 12164000 0 0 0 15449000 12401000 14143000 0 0 0 13152000 13790000 12395000 0 0 0 13315000 13427000 16519000 0 0 0 3431 1575 3336 65209;65210;65211;65212;65213;65214;65215;65216;65217;65218;65219;65220 39759;39760;39761;39762;39763;39764;39765;39766;39767;39768;39769 39762 11 DLAVQYR Unmodified 863.45012 0.45011648 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 20.906 21.203 1;2 0.0023328 8453 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.44 91.437 1404900000 167380000 153580000 126690000 0 0 0 73647000 78077000 67554000 0 0 0 116840000 102400000 95367000 1758000 987600 1081900 133680000 138630000 147250000 0 0 0 3432 638 3337 65221;65222;65223;65224;65225;65226;65227;65228;65229;65230;65231;65232;65233;65234;65235;65236;65237;65238;65239;65240;65241;65242;65243;65244;65245;65246;65247 39770;39771;39772;39773;39774;39775;39776;39777;39778 39775 5 DLAVSSGSACTSASLEPSYVLR Unmodified 2269.0896 0.089626228 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 43.449 41.847 2;3 2.9101E-118 20308 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 379.86 372.31 763930000 97468000 75628000 69221000 3071900 3818100 3553800 63894000 53442000 51844000 1404900 0 0 45934000 44513000 44616000 0 0 0 70195000 67118000 65184000 0 1618100 1406900 3433 228 3338 65248;65249;65250;65251;65252;65253;65254;65255;65256;65257;65258;65259;65260;65261;65262;65263;65264;65265;65266;65267;65268;65269;65270;65271;65272;65273;65274;65275;65276;65277;65278;65279;65280 39779;39780;39781;39782;39783;39784;39785;39786;39787;39788;39789;39790;39791 39788 12 DLDEDIR Unmodified 874.40323 0.40322587 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 1 2 2 2 2 19.778 20.256 2 0.0012847 8104 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.72 111.85 1531900000 95804000 90295000 79919000 0 0 0 133890000 142040000 141120000 0 0 0 143100000 131250000 123190000 0 0 0 170350000 139620000 141320000 0 0 0 3434 537 3339 65281;65282;65283;65284;65285;65286;65287;65288;65289;65290;65291;65292;65293;65294;65295;65296;65297;65298 39792;39793;39794;39795;39796;39797;39798;39799;39800;39801 39794 8 DLDEIITIAGQELNEK Unmodified 1799.9153 0.9152739 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 55.253 53.801 2;3 3.2932E-10 26490 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 135.72 129.45 1416800000 191890000 193240000 182110000 0 0 0 63430000 59552000 50712000 0 0 0 104930000 97171000 109320000 0 0 0 131220000 121970000 111280000 0 0 0 3435 1375 3340 65299;65300;65301;65302;65303;65304;65305;65306;65307;65308;65309;65310;65311;65312;65313;65314;65315;65316;65317;65318;65319 39802;39803;39804;39805;39806;39807;39808;39809;39810;39811;39812;39813;39814;39815;39816;39817 39806 15 DLDGTILATGFPFK Unmodified 1493.7766 0.77659558 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 55.069 53.609 2 5.435E-15 25583 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 199.09 180.11 596280000 43437000 44929000 48203000 0 0 689410 54627000 44221000 49837000 0 0 0 41387000 48779000 48683000 0 0 0 63754000 55021000 52708000 0 0 0 3436 787 3341 65320;65321;65322;65323;65324;65325;65326;65327;65328;65329;65330;65331;65332 39818;39819;39820;39821;39822;39823;39824;39825;39826 39824 9 DLDLEASAAAHPVR Unmodified 1463.7369 0.73685603 682 P0ABU7 exbB Biopolymer transport protein ExbB yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 26.041 24.844 2;3 2.1845E-06 11226 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.65 106.61 309180000 13340000 12046000 4368400 5121100 6656400 8217400 13663000 20278000 12993000 5791000 4551400 5932800 21970000 17849000 15060000 0 0 0 35534000 37678000 36515000 10756000 10844000 10020000 3437 682 3342 65333;65334;65335;65336;65337;65338;65339;65340;65341;65342;65343;65344;65345;65346;65347;65348;65349;65350;65351;65352;65353;65354;65355;65356;65357;65358;65359;65360;65361;65362;65363;65364;65365;65366;65367;65368 39827;39828;39829;39830;39831;39832;39833;39834;39835;39836;39837;39838;39839 39832 11 DLDQECGSTCAADFR Unmodified 1743.6828 0.6828479 1093 P14081 selB Selenocysteine-specific elongation factor yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 26.196 25.38 2 0.057438 11435 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 41.218 35.246 21496000 6098000 7614300 5867800 0 0 0 0 0 0 0 0 0 1915800 0 0 0 0 0 0 0 0 0 0 0 3438 1093 3343 65369;65370;65371;65372 39840 39840 1 DLDRDTAR Unmodified 960.46247 0.46247208 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.475 11.291 2 0.00076586 2605 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.78 112.18 280570000 39364000 39907000 43499000 0 0 0 26555000 25847000 33070000 0 0 0 13998000 13028000 16685000 0 0 0 9735600 8335800 10547000 0 0 0 3439 1341 3344 65373;65374;65375;65376;65377;65378;65379;65380;65381;65382;65383;65384 39841;39842;39843;39844;39845 39843 5 DLDRIDR Unmodified 901.46174 0.4617438 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 13.415 13.582 2 0.043558 3308 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 71.877 30.448 100200000 0 0 0 0 0 0 28523000 0 0 0 0 0 0 0 0 36942000 15430000 19302000 0 0 0 0 0 0 3440 733 3345 65385;65386;65387;65388 39846 39846 1 DLDTIANEPLHYDWEALR Unmodified 2170.0331 0.033097628 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 50.609 49.202 2;3 2.9639E-55 23194 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 322.07 301.21 3858500000 277460000 315110000 262560000 0 0 0 270770000 266170000 279590000 2619400 3009600 3695000 313740000 278800000 248560000 0 0 0 408880000 473810000 440140000 7464900 3097400 3056800 3441 29 3346 65389;65390;65391;65392;65393;65394;65395;65396;65397;65398;65399;65400;65401;65402;65403;65404;65405;65406;65407;65408;65409;65410;65411;65412;65413;65414;65415;65416;65417;65418 39847;39848;39849;39850;39851;39852;39853;39854;39855;39856;39857;39858;39859;39860;39861;39862;39863;39864;39865;39866;39867;39868 39863 21 DLDVTATNR Unmodified 1003.4934 0.49343786 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 17.736 18.402 2 1.7675E-05 6810 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 157.34 128.19 1272400000 151450000 137340000 110350000 1707000 0 0 139600000 126110000 123420000 0 0 0 101220000 100980000 111670000 0 0 0 168530000 0 0 0 0 0 3442 1639 3347 65419;65420;65421;65422;65423;65424;65425;65426;65427;65428;65429 39869;39870;39871;39872;39873 39873 5 DLEEFAMSYEESLKEESDSVFMR Unmodified 2770.199 0.19897826 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.983 53.53 3 7.4469E-22 19695 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 164.58 164.58 371830000 81761000 71628000 57047000 10951000 14768000 16205000 23299000 23265000 25846000 4686400 0 0 8591800 11968000 0 0 0 0 7624500 0 14192000 0 0 0 3443 613 3348 65430;65431;65432;65433;65434;65435;65436;65437;65438;65439;65440;65441;65442;65443 39874;39875;39876;39877;39878;39879 39875 6 DLEEIPDNVIADLDIHPVK Unmodified 2144.1001 0.10011456 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 53.485 52.299 2;3 4.0342E-14 19816 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 107.63 99.157 1870800000 206400000 175400000 142570000 2931300 1997000 0 114740000 98396000 82554000 13068000 9793700 12450000 127160000 120980000 115290000 61506000 91963000 105230000 116170000 147140000 125010000 0 0 0 3444 536 3349 65444;65445;65446;65447;65448;65449;65450;65451;65452;65453;65454;65455;65456;65457;65458;65459;65460;65461;65462;65463;65464;65465;65466;65467;65468;65469;65470;65471;65472;65473;65474;65475;65476;65477;65478;65479 39880;39881;39882;39883;39884;39885;39886;39887;39888;39889;39890;39891;39892;39893;39894;39895;39896;39897;39898;39899 39883 19 DLEEIPDNVIADLDIHPVKR Unmodified 2300.2012 0.20122559 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 1 3 2 2 2 1 1 1 49.062 47.881 2;3;4 3.3334E-10 22575 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.67 113.71 1359600000 57101000 57203000 55805000 6673200 7379200 5796400 78732000 67610000 76283000 41677000 39444000 51978000 56943000 28498000 51638000 139400000 32562000 302730000 50475000 55585000 56719000 14419000 12812000 12098000 3445 536 3350 65480;65481;65482;65483;65484;65485;65486;65487;65488;65489;65490;65491;65492;65493;65494;65495;65496;65497;65498;65499;65500;65501;65502;65503;65504;65505;65506;65507;65508;65509;65510;65511;65512;65513;65514;65515;65516;65517;65518;65519;65520;65521;65522;65523;65524 39900;39901;39902;39903;39904;39905;39906;39907;39908;39909;39910;39911;39912;39913;39914;39915;39916;39917;39918;39919;39920;39921;39922;39923;39924;39925;39926;39927;39928 39925 29 DLEHPIEVPVGK Unmodified 1331.7085 0.70851601 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 29.685 28.375 2;3 1.4805E-06 13092 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 174.41 163.25 12731000000 330280000 297140000 307500000 17469000 14239000 15204000 1064500000 1043100000 966660000 329810000 283060000 286500000 1010300000 1072000000 976440000 66464000 53315000 54645000 1271700000 1297400000 1274000000 228580000 232790000 237250000 3446 646 3351 65525;65526;65527;65528;65529;65530;65531;65532;65533;65534;65535;65536;65537;65538;65539;65540;65541;65542;65543;65544;65545;65546;65547;65548;65549;65550;65551;65552;65553;65554;65555;65556;65557;65558;65559;65560;65561;65562;65563;65564;65565;65566;65567;65568;65569 39929;39930;39931;39932;39933;39934;39935;39936;39937;39938;39939;39940;39941;39942;39943;39944;39945;39946;39947;39948;39949;39950;39951;39952;39953;39954;39955;39956;39957;39958;39959;39960;39961;39962;39963;39964;39965;39966;39967;39968;39969;39970 39962 42 DLEKLEDEGFLTR Unmodified 1563.7781 0.77805214 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 1 2 2 2 38.463 36.658 2;3 9.0914E-07 12787 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 145.91 143.97 86434000 0 2979000 0 13995000 10705000 13104000 0 2118800 0 0 0 0 1516400 2024800 0 0 0 0 0 0 0 13025000 12990000 13976000 3447 1933 3352 65570;65571;65572;65573;65574;65575;65576;65577;65578;65579;65580;65581;65582;65583;65584;65585 39971;39972;39973;39974;39975;39976;39977;39978;39979 39979 9 DLELGGHMASFQSSATIYDVCFNHFFR Unmodified 3148.4171 0.41712515 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 8 7 7 4 4 5 2 3 5 4 3 3 3 3 3 5 3 3 7 8 9 53.13 51.886 2;3;4;5 1.9125E-172 18552 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 510.35 508.61 25458000000 161090000 152840000 111050000 3789600000 3557600000 3932300000 410980000 400390000 365730000 334900000 339060000 383470000 221310000 216670000 212210000 77044000 108880000 130390000 344790000 288390000 316770000 2717100000 3291800000 3593600000 3448 939 3353 65586;65587;65588;65589;65590;65591;65592;65593;65594;65595;65596;65597;65598;65599;65600;65601;65602;65603;65604;65605;65606;65607;65608;65609;65610;65611;65612;65613;65614;65615;65616;65617;65618;65619;65620;65621;65622;65623;65624;65625;65626;65627;65628;65629;65630;65631;65632;65633;65634;65635;65636;65637;65638;65639;65640;65641;65642;65643;65644;65645;65646;65647;65648;65649;65650;65651;65652;65653;65654;65655;65656;65657;65658;65659;65660;65661;65662;65663;65664;65665;65666;65667;65668;65669;65670;65671;65672;65673;65674;65675;65676;65677;65678;65679;65680;65681;65682;65683;65684;65685;65686;65687;65688;65689;65690;65691;65692;65693;65694;65695 39980;39981;39982;39983;39984;39985;39986;39987;39988;39989;39990;39991;39992;39993;39994;39995;39996;39997;39998;39999;40000;40001;40002;40003;40004;40005;40006;40007;40008;40009;40010;40011;40012;40013;40014;40015;40016;40017;40018;40019;40020;40021;40022;40023;40024;40025;40026;40027;40028;40029;40030;40031;40032;40033;40034;40035;40036;40037;40038;40039;40040;40041;40042;40043;40044;40045;40046;40047;40048;40049;40050;40051;40052;40053;40054;40055;40056;40057;40058;40059;40060;40061;40062;40063;40064;40065;40066 40047 83 DLELGGHMASFQSSATIYDVCFNHFFR Oxidation (M) 3164.412 0.41203977 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 5 4 5 1 2 2 2 1 2 1 1 1 6 5 7 51.151 49.8 3;4 3.6314E-31 19683 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 193.77 193.56 1680400000 5613900 0 0 336150000 267830000 327570000 8690600 12492000 13274000 13811000 12310000 12176000 0 0 5000100 0 0 0 0 10037000 6248700 228210000 209740000 211260000 3449 939 3353 65696;65697;65698;65699;65700;65701;65702;65703;65704;65705;65706;65707;65708;65709;65710;65711;65712;65713;65714;65715;65716;65717;65718;65719;65720;65721;65722;65723;65724;65725;65726;65727;65728;65729;65730;65731;65732;65733;65734;65735;65736;65737;65738;65739;65740;65741 40067;40068;40069;40070;40071;40072;40073;40074;40075;40076;40077;40078;40079;40080;40081;40082;40083;40084;40085;40086;40087;40088;40089;40090;40091;40092;40093;40094 40071 433 27 DLETQSQDGTFDK Unmodified 1482.6474 0.6474319 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.323 21.504 2 1.7595E-32 8777 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 218.52 203.25 1319500000 215980000 215870000 205820000 1253400 1369200 1458100 0 0 0 6383600 0 5830500 85216000 88799000 97564000 3469500 2319900 2167100 104110000 141730000 128790000 3058500 4082700 4195500 3450 373 3354 65742;65743;65744;65745;65746;65747;65748;65749;65750;65751;65752;65753;65754;65755;65756;65757;65758;65759;65760;65761;65762;65763;65764 40095;40096;40097;40098;40099;40100;40101;40102;40103;40104;40105;40106;40107;40108;40109;40110;40111 40100 17 DLEYLNSSVK Unmodified 1166.5819 0.58191851 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 29.812 28.632 2 0.00031842 13398 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.87 102.93 284450000 80882000 0 75943000 0 0 0 0 0 0 0 0 0 21043000 24098000 22006000 0 0 0 0 28941000 31541000 0 0 0 3451 235 3355 65765;65766;65767;65768;65769;65770;65771 40112;40113;40114 40113 2 DLEYLVALAEHR Unmodified 1427.7409 0.74087877 741 P0ACQ4 oxyR Hydrogen peroxide-inducible genes activator yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 50.373 48.937 3 7.4229E-07 24031 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.7 117.38 89500000 19848000 15239000 14608000 0 0 0 3569500 3542700 3721300 1384000 0 0 4596200 4930000 3832300 0 0 0 4582700 5442000 4204000 0 0 0 3452 741 3356 65772;65773;65774;65775;65776;65777;65778;65779;65780;65781;65782;65783;65784 40115;40116;40117;40118 40115 4 DLFAYACHQASPR Unmodified 1534.6987 0.69869638 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 1 1 1 2 2 1 1 1 29.747 28.377 2;3 1.705E-05 13254 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.86 100.97 114020000 16896000 18201000 15494000 0 0 0 9477700 8130900 9609900 894100 0 0 9071000 0 10207000 0 0 0 4158700 7218700 4656200 0 0 0 3453 162 3357 65785;65786;65787;65788;65789;65790;65791;65792;65793;65794;65795;65796;65797;65798;65799;65800;65801 40119;40120;40121;40122;40123 40120 1 DLFCSER Unmodified 925.39637 0.39636635 875 P0AEN1 fre NAD(P)H-flavin reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.933 23.021 2 0.0092255 10326 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.029 81.574 435580000 21583000 23276000 20154000 666750 536470 761790 34395000 39170000 37156000 0 0 0 32983000 28956000 30537000 0 0 0 53268000 54868000 55080000 0 1043900 1144600 3454 875 3358 65802;65803;65804;65805;65806;65807;65808;65809;65810;65811;65812;65813;65814;65815;65816;65817;65818 40124;40125;40126;40127;40128 40125 5 DLFDKLPQFK Unmodified 1249.6707 0.67067394 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.155 41.441 3 0.036861 16260 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 41.54 39.128 51407000 3093500 0 0 4387800 3508900 3167100 0 0 1714400 6794700 0 5580700 1303900 0 0 0 0 3158500 2126200 0 0 5674500 5618500 5277900 3455 582 3359 65819;65820;65821;65822;65823;65824;65825;65826;65827;65828;65829;65830;65831 40129;40130;40131 40130 2 DLFEDVR Unmodified 892.42905 0.42904669 98 P04968 ilvA L-threonine dehydratase biosynthetic IlvA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 34.282 32.937 2 0.078591 15590 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 57.811 52.273 46109000 8638200 9699300 8988100 0 0 0 0 5237300 0 0 0 0 2580500 3321000 2320200 0 0 0 0 5324800 0 0 0 0 3456 98 3360 65832;65833;65834;65835;65836;65837;65838;65839 40132 40132 1 DLFEGLLVSDLDGHPAPGVAESWDNK Unmodified 2780.3293 0.32933923 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 1 3 3 3 3 4 3 3 3 3 54.688 53.25 2;3;4 5.5827E-61 26269 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 327.42 313.87 16146000000 4615000000 4376200000 3919200000 1759000 0 0 379030000 367420000 344410000 0 0 0 333120000 324720000 294430000 0 0 0 383930000 434010000 372890000 0 0 0 3457 1217 3361 65840;65841;65842;65843;65844;65845;65846;65847;65848;65849;65850;65851;65852;65853;65854;65855;65856;65857;65858;65859;65860;65861;65862;65863;65864;65865;65866;65867;65868;65869;65870;65871;65872;65873;65874;65875;65876;65877;65878;65879 40133;40134;40135;40136;40137;40138;40139;40140;40141;40142;40143;40144;40145;40146;40147;40148;40149;40150;40151;40152;40153;40154;40155;40156 40148 24 DLFEGLLVSDLDGHPAPGVAESWDNKDAK Unmodified 3094.4884 0.48835907 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 1 2 2 1 1 1 2 2 2 1 1 1 52.179 50.959 3;4;5 1.8909E-16 24746 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.04 147.18 6753700000 2108400000 1772100000 1856600000 27927000 30555000 33962000 90991000 103520000 116360000 0 0 0 85229000 89227000 87943000 0 0 0 124990000 116400000 109540000 0 0 0 3458 1217 3362 65880;65881;65882;65883;65884;65885;65886;65887;65888;65889;65890;65891;65892;65893;65894;65895;65896;65897;65898;65899;65900;65901;65902;65903;65904;65905;65906;65907 40157;40158;40159;40160;40161;40162;40163;40164;40165;40166;40167;40168;40169;40170;40171;40172 40169 16 DLFEGLVNQNEK Unmodified 1404.6885 0.68850885 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 43.377 41.755 2 0.00074393 19694 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 77.379 71.513 283910000 26554000 18109000 20552000 0 0 0 29486000 26687000 30868000 0 0 14860000 20664000 0 0 0 0 0 32419000 33323000 30393000 0 0 0 3459 1900 3363 65908;65909;65910;65911;65912;65913;65914;65915;65916;65917;65918 40173;40174 40174 0 DLFFEDK Unmodified 912.4229 0.42289868 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 38.842 37.169 1;2 0.010377 17212 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 86.866 84.563 1332800000 111680000 105140000 88833000 0 0 0 154330000 145420000 137280000 0 0 0 108450000 104610000 93124000 0 0 0 100370000 95110000 88489000 0 0 0 3460 1608 3364 65919;65920;65921;65922;65923;65924;65925;65926;65927;65928;65929;65930;65931;65932;65933;65934;65935;65936;65937;65938;65939;65940;65941;65942 40175;40176;40177;40178;40179;40180;40181;40182;40183 40183 8 DLFPEYHQLWPNK Unmodified 1685.8202 0.82019173 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 45.68 44.087 2;3 9.8921E-09 21798 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.77 144.88 1614800000 56353000 56936000 49263000 0 0 0 168810000 155630000 157270000 35006000 47506000 37824000 127180000 126890000 109480000 0 4858700 0 144190000 159470000 149670000 10442000 10202000 7869900 3461 30 3365 65943;65944;65945;65946;65947;65948;65949;65950;65951;65952;65953;65954;65955;65956;65957;65958;65959;65960;65961;65962;65963;65964;65965;65966;65967;65968;65969;65970;65971;65972;65973;65974;65975;65976;65977 40184;40185;40186;40187;40188;40189;40190;40191;40192;40193;40194;40195;40196;40197;40198;40199;40200;40201;40202;40203;40204;40205;40206;40207;40208;40209;40210;40211;40212 40192 28 DLFPEYHQLWPNKFHNVTNGITPR Unmodified 2922.4565 0.45654585 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 41.099 39.772 4 0.0040991 16006 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 48.867 46.427 49788000 0 0 0 0 0 0 0 0 0 9439700 8120600 8778100 0 0 0 9732200 4669700 5141000 0 0 0 0 0 3906900 3462 30 3366 65978;65979;65980;65981;65982;65983;65984 40213;40214 40213 2 DLFPQIGQR Unmodified 1072.5665 0.56654322 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 2 2 2 38.899 37.202 2 0.00029907 18148 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.93 109.99 369770000 25124000 21851000 27363000 0 0 713800 29327000 29322000 33022000 0 0 0 29310000 23922000 21463000 0 0 0 42676000 41567000 44113000 0 0 0 3463 563 3367 65985;65986;65987;65988;65989;65990;65991;65992;65993;65994;65995;65996;65997;65998;65999;66000;66001 40215;40216;40217;40218;40219;40220;40221;40222;40223;40224 40217 10 DLFSRLGEVTAVPGR Unmodified 1615.8682 0.86820455 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.537 27.29 3 0.17222 12591 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 12.285 6.3812 1336200000 111450000 100240000 101050000 0 0 0 175830000 199020000 177370000 0 0 0 80234000 77224000 67070000 0 0 0 81258000 84520000 80910000 0 0 0 3464 111 3368 66002;66003;66004;66005;66006;66007;66008;66009;66010;66011;66012;66013 40225 40225 1 DLFVAQASLTGESLPVEK Unmodified 1902.9939 0.99385857 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 1 1 1 49.897 48.69 2;3 1.2666E-17 22905 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 223.39 204.29 302980000 0 0 0 0 0 0 0 0 0 0 0 0 95331000 78910000 87953000 0 6607800 0 5049200 18917000 3510300 1887400 0 4816600 3465 647 3369 66014;66015;66016;66017;66018;66019;66020;66021;66022;66023;66024;66025;66026 40226;40227;40228;40229;40230;40231;40232;40233;40234 40229 9 DLGASEFTILR Unmodified 1220.6401 0.6401021 950 P0AFK6 potC Spermidine/putrescine transport system permease protein PotC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 46.667 45.208 2 0.00041792 22015 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 88.496 60.321 42598000 0 0 0 0 0 0 5039100 4413600 2665000 0 0 0 3670400 4252700 2695200 0 0 0 6835900 7898400 5128000 0 0 0 3466 950 3370 66027;66028;66029;66030;66031;66032;66033;66034;66035 40235;40236 40236 2 DLGAVFLVGIGGK Unmodified 1244.7129 0.71287311 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 1 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 54.716 53.253 1;2 1.3178E-05 26321 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.4 105.19 562980000 56666000 38999000 39071000 3746500 2641400 2533700 114810000 97550000 98496000 9151800 5966900 3866500 13772000 13820000 11387000 0 0 0 13842000 17278000 19384000 0 0 0 3467 64 3371 66036;66037;66038;66039;66040;66041;66042;66043;66044;66045;66046;66047;66048;66049;66050;66051;66052;66053;66054;66055;66056;66057;66058 40237;40238;40239;40240;40241;40242;40243;40244;40245;40246;40247;40248 40243 10 DLGAVGVICGR Unmodified 1115.5757 0.5757277 1530 P39356 yjhU Uncharacterized transcriptional regulator YjhU yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.037 32.377 2 8.6049E-05 12680 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 122.52 101.22 92243000 0 13989000 10125000 0 0 0 6762900 6782400 4903200 6393200 5606000 0 6112300 5053200 6672800 0 0 0 10730000 9113700 0 0 0 0 3468 1530 3372 66059;66060;66061;66062;66063;66064;66065;66066;66067;66068;66069;66070 40249;40250;40251;40252 40249 1 DLGEKPFR Unmodified 960.50288 0.50288033 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.849 16.441 2 0.0011059 5595 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.4 129.4 121920000 0 0 9418400 801650 817660 568420 9729600 7710400 10959000 6050900 5087800 4885500 5877700 6994500 5081500 2131200 0 0 12511000 12938000 11567000 3007600 2904700 2879800 3469 1451 3373 66071;66072;66073;66074;66075;66076;66077;66078;66079;66080;66081;66082;66083;66084;66085;66086;66087;66088;66089;66090 40253;40254;40255;40256;40257;40258;40259;40260;40261 40259 9 DLGEVSGDSCQASNQDSPPSIPTAR Unmodified 2587.1456 0.14563756 1730 P69411 rcsF Outer membrane lipoprotein RcsF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 32.937 31.552 3 0.052001 10765 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 36.256 36.187 36748000 0 4359400 3487400 2561100 2647400 2950300 0 0 0 0 0 0 4206600 5406000 4688700 0 0 0 6441300 0 0 0 0 0 3470 1730 3374 66091;66092;66093;66094;66095;66096;66097;66098;66099 40262;40263 40263 2 DLGFAGFK Unmodified 853.4334 0.43340378 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.321 37.709 2 0.016212 18281 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 68.915 65.062 1032600000 93262000 89804000 79782000 1770200 1948900 1562000 87455000 89876000 91246000 16368000 10798000 12191000 54502000 51118000 55449000 2872300 1586800 2148800 87979000 85754000 83513000 11208000 10276000 10094000 3471 1408 3375 66100;66101;66102;66103;66104;66105;66106;66107;66108;66109;66110;66111;66112;66113;66114;66115;66116;66117;66118;66119;66120;66121;66122;66123 40264;40265;40266;40267;40268;40269;40270;40271;40272;40273;40274;40275;40276;40277 40268 14 DLGFEVIK Unmodified 919.50148 0.50148335 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.148 38.45 2 0.018502 18770 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 66.429 56.245 232590000 73925000 74576000 70358000 0 0 0 3190400 3164500 2660900 0 0 0 1719100 901300 0 0 0 0 0 2096000 0 0 0 0 3472 71 3376 66124;66125;66126;66127;66128;66129;66130;66131;66132 40278;40279;40280 40278 3 DLGFNVEVQPVPGTR Unmodified 1626.8366 0.83657007 1229 P23908 argE Acetylornithine deacetylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.873 43.254 2 2.3589E-11 20354 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 162.32 137.47 152110000 0 0 0 1594000 1051900 1384600 0 24896000 19759000 0 0 0 15929000 13907000 14672000 0 0 0 16148000 17867000 16322000 2663100 2655400 3260300 3473 1229 3377 66133;66134;66135;66136;66137;66138;66139;66140;66141;66142;66143;66144;66145;66146 40281;40282 40282 1 DLGIADNDWIEVFNSNGALTAR Unmodified 2390.1503 0.15025265 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 55.506 54.047 2;3 7.9393E-35 21745 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 271.19 263.45 107660000 0 0 0 0 0 0 0 0 0 5724100 6689600 3432300 0 4252500 0 0 0 0 0 3407200 2941300 29581000 21718000 29915000 3474 205 3378 66147;66148;66149;66150;66151;66152;66153;66154;66155;66156;66157;66158 40283;40284;40285;40286;40287;40288 40283 6 DLGILTVAVVTKPFNFEGK Unmodified 2047.1354 0.13537785 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 2 3 3 2 2 2 2 2 1 2 2 2 2 2 2 2 54.514 53.227 2;3 5.7292E-46 25978 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 269.7 263.56 2501300000 233920000 231160000 210260000 26056000 33520000 31678000 148170000 140010000 107920000 69083000 71052000 70906000 145510000 112570000 112730000 32739000 17935000 22557000 184200000 178190000 188050000 45912000 45033000 42109000 3475 502 3379 66159;66160;66161;66162;66163;66164;66165;66166;66167;66168;66169;66170;66171;66172;66173;66174;66175;66176;66177;66178;66179;66180;66181;66182;66183;66184;66185;66186;66187;66188;66189;66190;66191;66192;66193;66194;66195;66196;66197;66198;66199;66200;66201;66202;66203;66204;66205;66206;66207;66208 40289;40290;40291;40292;40293;40294;40295;40296;40297;40298;40299;40300;40301;40302;40303;40304;40305;40306;40307;40308;40309;40310;40311;40312;40313;40314;40315;40316 40314 28 DLGILTVAVVTKPFNFEGKK Unmodified 2175.2303 0.23034087 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 50.335 48.88 3 0.0018347 19906 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 61.102 60.723 25894000 0 0 0 1146900 1926200 1509800 0 0 0 7308500 4392700 4251900 0 0 0 0 0 0 0 0 0 2808600 2548900 0 3476 502 3380 66209;66210;66211;66212;66213;66214;66215;66216 40317;40318 40317 2 DLGMVGAEELR Unmodified 1188.5809 0.58087266 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 36.269 34.802 2 0.00010599 16741 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.71 88.545 604430000 175950000 147430000 156320000 0 0 0 0 15529000 0 0 0 0 15587000 18186000 10884000 0 0 0 20399000 21749000 22395000 0 0 0 3477 1111 3381 66217;66218;66219;66220;66221;66222;66223;66224;66225;66226 40319;40320;40321;40322;40323;40324;40325;40326;40327 40324 4 DLGNTVIVVEHDEDAIR Unmodified 1893.9432 0.94321999 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 38.785 37.378 2;3 5.8125E-40 13799 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 265.13 259.66 721310000 48643000 38555000 45604000 3421300 3812900 3223500 35133000 40654000 38453000 0 0 0 4872500 26198000 24511000 115870000 81082000 89577000 34420000 39051000 30413000 5164100 5637900 7009100 3478 222 3382 66227;66228;66229;66230;66231;66232;66233;66234;66235;66236;66237;66238;66239;66240;66241;66242;66243;66244;66245;66246;66247;66248;66249;66250;66251;66252;66253;66254;66255;66256;66257;66258;66259;66260;66261;66262 40328;40329;40330;40331;40332;40333;40334;40335;40336;40337;40338;40339;40340 40328 13 DLGQQGGVKPEEVDWQDNGLEGK Unmodified 2497.1721 0.1721103 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.249 32.789 3 7.6394E-44 12429 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 173.81 171.01 706850000 17278000 17852000 14680000 2506400 2259300 0 42628000 41550000 38952000 17423000 8171100 11961000 43254000 38322000 39775000 4655600 3009100 2997100 72163000 82004000 72401000 52248000 42800000 37955000 3479 205 3383 66263;66264;66265;66266;66267;66268;66269;66270;66271;66272;66273;66274;66275;66276;66277;66278;66279;66280;66281;66282;66283;66284;66285 40341;40342;40343;40344;40345;40346;40347;40348;40349;40350;40351;40352;40353;40354;40355;40356 40348 15 DLGSFDYGR Unmodified 1028.4563 0.45632407 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.816 30.312 2 0.0010373 14275 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 94.806 85.459 96442000 0 0 0 0 0 0 0 6918500 5976100 0 0 2711000 6932300 6247100 4438700 0 0 0 20283000 18948000 17490000 0 2716900 3780100 3480 75 3384 66286;66287;66288;66289;66290;66291;66292;66293;66294;66295;66296 40357;40358;40359;40360 40358 3 DLGSLIFIDMR Unmodified 1278.6642 0.66420836 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.483 54.012 2 1.4143E-26 26620 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 260.06 253.24 2682700000 147780000 149870000 157540000 2081600 0 0 198890000 180940000 185740000 2894600 2331900 2055300 302980000 289260000 255100000 0 0 0 263560000 241400000 297790000 898930 0 1556100 3481 1189 3385 66297;66298;66299;66300;66301;66302;66303;66304;66305;66306;66307;66308;66309;66310;66311;66312;66313;66314 40361;40362;40363;40364;40365;40366;40367;40368;40369;40370;40371;40372 40364 12 DLGSMDVNEVIEK Unmodified 1447.6865 0.68645994 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.604 37.923 2 3.0072E-09 18324 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 174.4 169.06 2045500000 139310000 128800000 137930000 0 1164800 977670 201590000 190300000 194950000 0 0 0 172250000 154690000 155820000 0 0 0 193130000 184730000 189880000 0 0 0 3482 445 3386 66315;66316;66317;66318;66319;66320;66321;66322;66323;66324;66325;66326;66327;66328 40373;40374;40375;40376;40377;40378;40379;40380;40381;40382;40383;40384 40378 12 DLGYGLLLK Unmodified 990.57498 0.57498264 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.239 45.911 2 0.0072664 18279 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 67.981 40.456 2291300000 56711000 51910000 43167000 13207000 13415000 13703000 289180000 248700000 290480000 114260000 105560000 105790000 154870000 159750000 145840000 22973000 16827000 15786000 114590000 126080000 122350000 22604000 22087000 21481000 3483 664 3387 66329;66330;66331;66332;66333;66334;66335;66336;66337;66338;66339;66340;66341;66342;66343;66344;66345;66346;66347;66348;66349;66350;66351;66352 40385;40386;40387;40388;40389;40390;40391;40392;40393;40394;40395;40396;40397;40398;40399;40400;40401;40402;40403;40404;40405;40406;40407;40408 40390 24 DLGYGLLLKR Unmodified 1146.6761 0.67609367 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 37.031 35.473 2;3 4.7691E-05 13967 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 141.39 131.99 243280000 0 0 0 8510700 9871800 8398600 0 0 0 56914000 50717000 52663000 0 0 0 10104000 8424000 8952800 0 0 0 10334000 8458400 9927600 3484 664 3388 66353;66354;66355;66356;66357;66358;66359;66360;66361;66362;66363;66364;66365;66366;66367;66368;66369;66370;66371;66372;66373;66374;66375;66376 40409;40410;40411;40412;40413;40414;40415;40416;40417;40418;40419;40420;40421;40422;40423 40417 15 DLGYYLLVYR Unmodified 1273.6707 0.67067394 1292 P27240 rfaY Lipopolysaccharide core heptose(II) kinase RfaY yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 53.911 52.445 2 0.00035541 24713 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 108.46 103.26 27299000 0 0 0 0 0 0 3034900 2823200 2627600 1268800 0 0 2765700 2432600 2650700 0 0 0 3571000 2730500 3394200 0 0 0 3485 1292 3389 66377;66378;66379;66380;66381;66382;66383;66384;66385;66386 40424 40424 1 DLHDDAEWMAK Unmodified 1329.566 0.56595087 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.484 26.337 2;3 5.6319E-08 12304 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.33 174.53 2054200000 171270000 166960000 169420000 0 0 0 217290000 216240000 211280000 0 0 0 123630000 125320000 118130000 0 0 0 168560000 192230000 173920000 0 0 0 3486 1505 3390 66387;66388;66389;66390;66391;66392;66393;66394;66395;66396;66397;66398;66399;66400;66401;66402;66403;66404;66405;66406;66407;66408;66409;66410 40425;40426;40427;40428;40429;40430;40431;40432;40433;40434;40435;40436;40437;40438;40439;40440;40441;40442;40443;40444;40445;40446;40447;40448 40426 24 DLHPELEVIGTNADDAVPHYLR Unmodified 2473.2238 0.22375194 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 42.683 40.954 4 2.813E-07 19869 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 108.17 102.38 254930000 20074000 13877000 16233000 0 0 0 20859000 20288000 17212000 0 0 0 22321000 20284000 23113000 0 0 0 26929000 25397000 26259000 0 2080400 0 3487 1313 3391 66411;66412;66413;66414;66415;66416;66417;66418;66419;66420;66421;66422;66423 40449;40450;40451;40452;40453;40454;40455 40452 7 DLHVSVEDK Unmodified 1040.5138 0.51383895 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 15.524 16.396 2 8.3641E-05 5676 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 140.35 132.42 98568000 0 0 0 580690 0 575410 25018000 0 25849000 0 0 0 9051300 8300700 0 0 0 0 0 13635000 15558000 0 0 0 3488 1910 3392 66424;66425;66426;66427;66428;66429;66430;66431 40456 40456 1 DLHWDIRPSPHFGTVEVR Unmodified 2160.0865 0.086470602 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 34.944 33.48 4 2.4974E-05 15866 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.493 82.16 94668000 20294000 15361000 11792000 0 0 0 11411000 9345900 12311000 0 0 0 2576900 2512000 0 0 0 0 0 3141800 5923000 0 0 0 3489 1887 3393 66432;66433;66434;66435;66436;66437;66438;66439;66440;66441 40457;40458;40459 40459 3 DLIAALK Unmodified 742.45889 0.45889025 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.657 33.209 2 0.021819 15253 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 75.311 8.3171 392460000 22978000 24048000 21317000 0 0 0 41281000 39248000 38320000 0 0 0 25888000 30586000 26616000 0 0 0 40740000 42337000 39101000 0 0 0 3490 1421 3394 66442;66443;66444;66445;66446;66447;66448;66449;66450;66451;66452;66453 40460;40461;40462;40463;40464;40465;40466;40467;40468;40469;40470;40471 40469 12 DLIDDAR Unmodified 816.39775 0.39774656 1202 P22939 ispA Farnesyl diphosphate synthase yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 22.778 22.266 2 0.13366 9411 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 47.743 15.807 103060000 0 0 0 0 0 0 6580100 40210000 5831400 0 0 0 0 0 0 0 0 0 0 50440000 0 0 0 0 3491 1202 3395 66454;66455;66456;66457 40472 40472 1 DLIELTESLFR Unmodified 1334.7082 0.70818166 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.853 54.38 2 1.0531E-19 27155 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 233.58 222.43 446760000 29739000 29722000 28228000 0 0 0 22565000 16766000 24306000 0 0 0 50450000 49297000 49725000 0 0 0 47585000 54707000 43668000 0 0 0 3492 448 3396 66458;66459;66460;66461;66462;66463;66464;66465;66466;66467;66468;66469 40473;40474;40475;40476;40477;40478;40479;40480;40481 40476 9 DLIENEQTLDLK Unmodified 1429.73 0.73003931 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 37.941 35.746 2 0.0001116 14057 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 89.679 56.301 22143000 0 0 0 614080 0 557900 9303800 0 1948000 2742500 3717600 3259400 0 0 0 0 0 0 0 0 0 0 0 0 3493 1877 3397 66470;66471;66472;66473;66474;66475;66476 40482 40482 0 DLIGWIDQPSVELSNALMHHPDINLILATGGPGMVK Unmodified 3850.975 0.97500117 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 3 3 2 2 2 3 3 3 2 2 1 2 1 2 2 2 3 55.437 53.983 3;4;5 8.7095E-30 21991 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 177.98 175.67 6622700000 139170000 456910000 564240000 254850000 268510000 270260000 622810000 593690000 564860000 212510000 213500000 192910000 300190000 302080000 207370000 0 0 0 302500000 235670000 248160000 245380000 216210000 210930000 3494 548 3398 66477;66478;66479;66480;66481;66482;66483;66484;66485;66486;66487;66488;66489;66490;66491;66492;66493;66494;66495;66496;66497;66498;66499;66500;66501;66502;66503;66504;66505;66506;66507;66508;66509;66510;66511;66512;66513;66514;66515;66516;66517;66518;66519;66520;66521 40483;40484;40485;40486;40487;40488;40489;40490;40491;40492;40493;40494;40495;40496;40497;40498;40499;40500;40501;40502;40503;40504;40505;40506;40507;40508;40509;40510;40511;40512;40513 40484 30 DLITFVADRPGHDLR Unmodified 1723.9006 0.90056731 1308 P27830 rffG dTDP-glucose 4,6-dehydratase 2 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.633 34.077 3;4 4.9961E-06 16705 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 91.441 80.179 521010000 28637000 25051000 23655000 0 0 0 41192000 39608000 39976000 0 0 0 44009000 42712000 41326000 0 0 0 66825000 64073000 63942000 0 0 0 3495 1308 3399 66522;66523;66524;66525;66526;66527;66528;66529;66530;66531;66532;66533;66534;66535;66536;66537;66538;66539;66540;66541;66542;66543;66544;66545 40514;40515;40516;40517;40518;40519;40520;40521;40522;40523;40524;40525;40526;40527;40528;40529;40530 40516 16 DLIVDSYIK Unmodified 1064.5754 0.57537657 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.115 39.555 2 0.0059543 19071 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.498 31.331 567580000 21082000 21394000 18483000 13724000 12465000 11891000 0 0 53996000 27249000 26607000 25948000 34621000 29360000 31373000 5145200 5234100 4848500 55734000 55109000 54718000 20831000 20180000 17585000 3496 648 3400 66546;66547;66548;66549;66550;66551;66552;66553;66554;66555;66556;66557;66558;66559;66560;66561;66562;66563;66564;66565;66566;66567 40531;40532;40533;40534;40535;40536;40537;40538;40539;40540;40541;40542;40543;40544;40545;40546;40547;40548 40545 18 DLIVIGGGINGAGIAADAAGR Unmodified 1880.0116 0.011574324 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 2 2 2 1 2 2 1 1 1 2 2 2 50.341 48.902 2;3 7.0321E-43 19513 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 290.64 282.23 595720000 0 0 0 1105500 1860900 1266200 16815000 13431000 44764000 169710000 136590000 123770000 6180100 6870500 10375000 0 0 0 4911300 2482900 0 17629000 19986000 17971000 3497 1088 3401 66568;66569;66570;66571;66572;66573;66574;66575;66576;66577;66578;66579;66580;66581;66582;66583;66584;66585;66586;66587;66588;66589;66590;66591;66592;66593;66594 40549;40550;40551;40552;40553;40554;40555;40556;40557;40558;40559 40552 10 DLKDNIALGR Unmodified 1113.6142 0.6142217 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 23.588 22.81 2;3 3.4081E-05 7701 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 149.65 114.85 284010000 9543100 12453000 10123000 6488100 5371000 6667000 9301800 15570000 8497900 23832000 17828000 20242000 7190800 8472800 7943900 6105800 3983300 3964300 21124000 23591000 28545000 10064000 8691300 8414700 3498 1854 3402 66595;66596;66597;66598;66599;66600;66601;66602;66603;66604;66605;66606;66607;66608;66609;66610;66611;66612;66613;66614;66615;66616;66617;66618;66619;66620;66621;66622;66623;66624;66625;66626;66627;66628;66629;66630;66631;66632;66633;66634;66635;66636;66637 40560;40561;40562;40563;40564;40565;40566;40567;40568;40569;40570;40571;40572;40573;40574;40575 40565 15 DLKDNIALGRK Unmodified 1241.7092 0.70918471 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 2 By MS/MS By MS/MS By matching 1 1 1 17.397 17.234 3 0.025276 5109 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 49.189 42.895 8654600 0 0 0 0 0 0 0 0 0 4684100 3055100 0 0 0 0 0 915480 0 0 0 0 0 0 0 3499 1854 3403 66638;66639;66640 40576;40577 40577 2 DLKGPQFLHIMTK Unmodified 1526.8279 0.82791964 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 2 2 2 2 33.722 31.694 3;4 0.012788 12690 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 47.666 44.892 71035000 0 0 0 7588800 2867500 2332500 0 0 0 10136000 8605700 12560000 0 0 0 0 0 0 0 0 0 9555200 9140900 8247600 3500 1909 3404 66641;66642;66643;66644;66645;66646;66647;66648;66649;66650;66651;66652;66653;66654;66655;66656 40578;40579;40580;40581;40582;40583;40584;40585;40586 40578 9 DLKPTLESK Unmodified 1029.5706 0.57062555 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.527 15.187 2 0.00092791 4986 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.69 77.508 264750000 27378000 18184000 21439000 0 0 0 18121000 19153000 20971000 504530 0 0 16368000 19081000 15064000 0 0 0 30017000 28233000 29635000 604830 0 0 3501 280 3405 66657;66658;66659;66660;66661;66662;66663;66664;66665;66666;66667;66668;66669;66670 40587;40588;40589;40590;40591;40592;40593;40594 40589 8 DLKPVVEMGPDALIMSDPGLIMLVR Unmodified 2708.4315 0.43150157 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.566 54.113 3 3.5757E-08 26918 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 111.58 108.48 605790000 42975000 36293000 45136000 1111000 1346700 0 37139000 23674000 25762000 0 0 0 69013000 61170000 55635000 0 0 0 70831000 62762000 72940000 0 0 0 3502 1856 3406 66671;66672;66673;66674;66675;66676;66677;66678;66679;66680;66681;66682;66683;66684 40595;40596;40597;40598;40599;40600;40601;40602;40603;40604 40595 10 DLLAGIVAK Unmodified 898.54877 0.54876789 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 1 41.08 39.263 1;2 0.00035837 18480 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 141.39 102.6 863400000 15705000 11110000 14578000 0 0 0 123250000 100430000 99145000 1646600 1178100 0 84547000 76898000 74034000 0 0 0 81429000 91544000 85219000 965240 708850 1018600 3503 1323 3407 66685;66686;66687;66688;66689;66690;66691;66692;66693;66694;66695;66696;66697;66698;66699;66700;66701;66702;66703;66704;66705;66706;66707;66708;66709;66710 40605;40606;40607;40608;40609;40610;40611;40612;40613;40614;40615;40616;40617;40618;40619;40620;40621;40622;40623 40620 12 DLLAITPGENAVNIADVEPASELFK Unmodified 2625.3538 0.35376306 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.345 53.862 2 3.4558E-15 26534 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.64 139.86 175500000 37783000 36154000 34611000 0 0 0 9526100 10238000 9355400 0 0 0 10875000 5506800 0 0 0 0 13891000 7557900 0 0 0 0 3504 218 3408 66711;66712;66713;66714;66715;66716;66717;66718;66719;66720 40624;40625 40625 2 DLLALSPEDR Unmodified 1127.5823 0.58225287 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.644 36.97 2 0.00017736 18180 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 123.35 117.25 192820000 23942000 16842000 20038000 0 0 0 18965000 18622000 20531000 0 0 0 8492300 9329200 10166000 0 0 0 17344000 15249000 13304000 0 0 0 3505 1910 3409 66721;66722;66723;66724;66725;66726;66727;66728;66729;66730;66731;66732 40626;40627;40628;40629;40630;40631 40627 3 DLLAPWVPDAPSR Unmodified 1435.746 0.74596415 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.564 51.287 2 8.2476E-06 23986 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 122.69 119.96 670500000 59962000 68278000 53150000 1518900 1751600 1037900 58166000 51343000 51351000 0 2123500 2821700 47919000 43357000 45867000 0 0 0 58862000 60779000 57615000 0 3015300 1582600 3506 1192 3410 66733;66734;66735;66736;66737;66738;66739;66740;66741;66742;66743;66744;66745;66746;66747;66748;66749;66750;66751 40632;40633;40634;40635;40636;40637;40638;40639;40640;40641;40642;40643 40643 12 DLLAYLR Unmodified 862.49125 0.49125301 220 P09980 rep ATP-dependent DNA helicase Rep yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 47.916 46.54 2 0.0066314 22723 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.669 67.352 18694000 4914600 4212400 2655200 0 0 0 1473400 0 0 0 0 0 1161100 0 0 0 0 0 0 2419200 1858400 0 0 0 3507 220 3411 66752;66753;66754;66755;66756;66757;66758 40644 40644 1 DLLDNVQYAPAR Unmodified 1373.6939 0.69392858 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 37.695 36.455 2 6.4959E-07 17734 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 174.73 164.5 49922000 0 18883000 11207000 0 0 0 18618000 0 0 0 0 0 0 0 0 0 0 1212900 0 0 0 0 0 0 3508 127 3412 66759;66760;66761;66762 40645;40646;40647 40646 1 DLLGATNPANALAGTLR Unmodified 1666.9002 0.90023296 315 P0A763 ndk Nucleoside diphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 2 2 2 2 51.063 49.799 2;3 1.191E-18 24132 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 220.9 209.58 5122300000 703550000 692470000 666020000 0 0 0 297190000 261080000 227430000 0 0 0 196800000 187530000 192020000 0 0 0 582110000 578990000 537150000 0 0 0 3509 315 3413 66763;66764;66765;66766;66767;66768;66769;66770;66771;66772;66773;66774;66775;66776;66777;66778;66779;66780;66781;66782;66783;66784;66785;66786;66787 40648;40649;40650;40651;40652;40653;40654;40655;40656;40657;40658;40659;40660;40661;40662;40663;40664;40665;40666;40667;40668;40669;40670;40671 40656 24 DLLIWLEGHLDQPLSLDNVAAK Unmodified 2459.306 0.30602501 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.434 54.266 3 1.0527E-21 26580 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.77 157.31 708690000 78517000 64014000 68654000 0 0 0 46468000 47032000 43128000 0 0 0 31764000 32645000 28428000 20793000 40334000 64158000 52022000 40611000 50123000 0 0 0 3510 731 3414 66788;66789;66790;66791;66792;66793;66794;66795;66796;66797;66798;66799;66800;66801;66802 40672;40673;40674;40675;40676;40677;40678;40679;40680;40681;40682;40683 40680 10 DLLNVPSNYK Unmodified 1161.603 0.60298831 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.996 32.358 2 1.8423E-06 15478 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.56 157.19 1861200000 274350000 282220000 235550000 11224000 11184000 13909000 118470000 118540000 119390000 25723000 18916000 18013000 84839000 79339000 84587000 0 0 0 114680000 125270000 124990000 0 0 0 3511 1211 3415 66803;66804;66805;66806;66807;66808;66809;66810;66811;66812;66813;66814;66815;66816;66817;66818;66819;66820 40684;40685;40686;40687;40688;40689;40690;40691;40692;40693;40694;40695 40693 11 DLLPFMR Unmodified 890.46841 0.46840908 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.516 48.117 2 0.0022284 23367 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 116 105.08 142170000 15209000 15406000 11909000 6904000 6726500 6909400 12155000 8696800 11364000 1328800 1686400 0 5881900 5941500 4273700 0 0 0 9360800 10569000 7852900 0 0 0 3512 839 3416 66821;66822;66823;66824;66825;66826;66827;66828;66829;66830;66831;66832;66833;66834;66835;66836;66837 40696;40697;40698;40699;40700;40701;40702;40703;40704;40705;40706;40707;40708;40709;40710 40700 15 DLLPLVEGCTVSTK Unmodified 1530.7963 0.79634474 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 46.178 44.644 2 4.2721E-08 20991 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 146.16 124.79 2200000000 160540000 160690000 148090000 15238000 16004000 15093000 158500000 181310000 153170000 52468000 50792000 47197000 156650000 137050000 133780000 0 8390300 10082000 171160000 175680000 176080000 23279000 22958000 25759000 3513 245 3417 66838;66839;66840;66841;66842;66843;66844;66845;66846;66847;66848;66849;66850;66851;66852;66853;66854;66855;66856;66857;66858;66859;66860;66861 40711;40712;40713;40714;40715;40716;40717;40718;40719;40720;40721;40722;40723;40724;40725;40726;40727;40728;40729;40730;40731;40732;40733 40731 23 DLLPNPPK Unmodified 892.50182 0.5018177 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.574 26.427 2 0.0031662 12199 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.407 85.167 1829600000 35328000 32208000 29765000 0 0 0 173390000 166730000 165440000 0 0 0 157420000 171030000 154470000 0 0 0 255040000 247370000 241450000 0 0 0 3514 895 3418 66862;66863;66864;66865;66866;66867;66868;66869;66870;66871;66872;66873 40734;40735;40736;40737;40738;40739;40740;40741;40742;40743;40744;40745;40746;40747;40748;40749 40735 13 DLLTAYK Unmodified 822.44872 0.4487195 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 29.402 28.031 1;2 0.0089492 12979 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 117.93 74.868 1536700000 108230000 95509000 85782000 1128000 912860 1352800 140720000 124640000 127560000 0 1930300 1616300 105640000 88818000 89792000 0 0 0 193590000 185330000 177620000 2326000 2334400 1832300 3515 29 3419 66874;66875;66876;66877;66878;66879;66880;66881;66882;66883;66884;66885;66886;66887;66888;66889;66890;66891;66892;66893;66894;66895;66896;66897;66898;66899;66900;66901;66902;66903;66904;66905;66906 40750;40751;40752;40753;40754;40755;40756;40757;40758;40759;40760;40761;40762;40763;40764;40765;40766;40767 40757 9 DLMGCQVVTTEGYDLGK Unmodified 1884.8597 0.85974963 379 P0A7X6 rimM Ribosome maturation factor RimM yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 42.47 40.727 2 8.3661E-14 19950 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 162.93 146.39 67615000 11451000 12363000 8912500 0 0 0 7917800 8158800 6120300 0 0 0 0 3408000 0 0 0 0 0 4043800 5240100 0 0 0 3516 379 3420 66907;66908;66909;66910;66911;66912;66913;66914;66915 40768;40769;40770;40771 40771 1 DLMGNSSELR Unmodified 1120.5183 0.5182724 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.485 24.396 2 0.0019075 10996 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 86.136 76.619 318590000 27817000 24792000 21446000 0 0 0 29537000 34902000 28424000 0 0 0 21832000 23398000 17755000 0 0 0 27389000 32787000 28514000 0 0 0 3517 1586 3421 66916;66917;66918;66919;66920;66921;66922;66923;66924;66925;66926;66927 40772;40773;40774;40775;40776;40777 40775 0 DLNDFATVNATYEAFFTEHNATFPAR Unmodified 2961.357 0.35695096 920 P0AF93 ridA 2-iminobutanoate/2-iminopropanoate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 3 3 3 3 3 3 54.509 53.065 2;3;4 6.4578E-61 26029 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 300.87 295.32 3680100000 654410000 566450000 578410000 2901300 0 0 292170000 294230000 286100000 0 0 0 138430000 111000000 117910000 0 0 0 234650000 215240000 188210000 0 0 0 3518 920 3422 66928;66929;66930;66931;66932;66933;66934;66935;66936;66937;66938;66939;66940;66941;66942;66943;66944;66945;66946;66947;66948;66949;66950;66951;66952;66953;66954;66955;66956;66957;66958;66959;66960;66961;66962;66963;66964 40778;40779;40780;40781;40782;40783;40784;40785;40786;40787;40788;40789;40790;40791;40792;40793;40794 40790 17 DLNDQFDR Unmodified 1021.4465 0.44648767 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.939 21.838 2 0.00028321 8914 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.04 142.56 676130000 31602000 24495000 19571000 0 1098300 639990 143630000 168610000 139710000 8717900 10012000 6870700 15328000 14753000 17964000 0 0 0 24935000 24987000 22221000 0 0 987940 3519 522 3423 66965;66966;66967;66968;66969;66970;66971;66972;66973;66974;66975;66976;66977;66978;66979;66980;66981;66982 40795;40796;40797;40798;40799;40800;40801;40802;40803;40804;40805;40806;40807 40803 13 DLNIDPATLR Unmodified 1126.5982 0.59823728 129 P06720 melA Alpha-galactosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 37.672 35.793 2 2.9665E-05 17259 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.17 140.76 85545000 20587000 22840000 18606000 0 4383100 4671800 3956100 4401700 0 6099200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3520 129 3424 66983;66984;66985;66986;66987;66988;66989;66990 40808;40809;40810 40810 3 DLNLTDAQK Unmodified 1016.5138 0.51383895 1938 P77754 spy Spheroplast protein Y yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.681 21.603 2 1.5514E-05 8512 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 159.2 116.33 796320000 85086000 77955000 69953000 3502500 3640600 4376100 63044000 80058000 71507000 7208700 1961100 6350800 46955000 44927000 41295000 0 0 1643500 53314000 56270000 59193000 5806500 6335800 5939800 3521 1938 3425 66991;66992;66993;66994;66995;66996;66997;66998;66999;67000;67001;67002;67003;67004;67005;67006;67007;67008;67009;67010;67011;67012 40811;40812;40813;40814;40815;40816;40817;40818;40819;40820;40821;40822;40823;40824;40825;40826;40827;40828;40829 40827 19 DLNNESTPMAFENIK Unmodified 1721.7931 0.79305028 1669 P64451 ydcL Uncharacterized lipoprotein YdcL yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.949 38.171 2 2.1888E-06 18587 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 132.59 126.35 50459000 8195900 9147300 8566200 929300 1205100 1100800 0 0 3251900 0 923380 942170 0 0 0 0 0 0 5711300 5663700 4822300 0 0 0 3522 1669 3426 67013;67014;67015;67016;67017;67018;67019;67020;67021;67022;67023;67024 40830;40831 40830 2 DLPADPLTLFER Unmodified 1385.7191 0.7190807 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.197 53.87 2 1.4594E-06 26628 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 148.32 134.11 590530000 46665000 47287000 48573000 0 1893100 0 52304000 41542000 32122000 10233000 9836700 9405600 37056000 35882000 36710000 5390400 5348700 0 49487000 48634000 46537000 6898300 9692400 9027800 3523 944 3427 67025;67026;67027;67028;67029;67030;67031;67032;67033;67034;67035;67036;67037;67038;67039;67040;67041;67042;67043;67044;67045 40832;40833;40834;40835;40836;40837;40838;40839;40840;40841;40842;40843;40844;40845;40846;40847;40848;40849 40837 18 DLPAITLDGHQVEVCANIGTVR Unmodified 2377.206 0.20599339 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 46.617 45.237 3 1.3582E-10 22036 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128.98 117.19 81764000 0 0 0 0 0 2390300 18293000 0 0 0 0 0 9509300 8423600 7167300 0 0 0 11568000 12010000 12403000 0 0 0 3524 192 3428 67046;67047;67048;67049;67050;67051;67052;67053 40850;40851;40852;40853 40851 4 DLPAWHPLLTGSK Unmodified 1433.7667 0.76669959 442 P0A8L5 ycgN UPF0260 protein YcgN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 38.956 37.423 3 0.0014608 18197 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 65.092 64.193 87872000 12522000 10163000 9775000 228750 0 0 0 0 0 0 0 0 6451100 6478400 6323300 0 0 0 11405000 13014000 11512000 0 0 0 3525 442 3429 67054;67055;67056;67057;67058;67059;67060;67061;67062;67063 40854;40855;40856;40857;40858;40859 40855 6 DLPDLVYMTEAEK Unmodified 1522.7225 0.7225111 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 50.268 49.996 2 8.4149E-07 18273 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 138.76 128.24 112480000 4031200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34657000 37261000 36529000 0 0 0 0 0 0 3526 1057 3430 67064;67065;67066;67067 40860;40861;40862 40861 3 DLPDSYKR Unmodified 992.49271 0.49270958 268 P0A6P5 der GTPase Der yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 29.456 28.232 2 0.12045 12841 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 50.039 2.9725 98996000 44310000 27217000 24815000 0 0 0 0 1873700 0 0 0 0 0 781400 0 0 0 0 0 0 0 0 0 0 3527 268 3431 67068;67069;67070;67071;67072 40863;40864 40863 2 DLPEDIYVVIEIPANADPIKYEIDK Unmodified 2871.4794 0.47935751 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.196 53.723 3 2.853E-10 25659 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 121.35 110.35 616610000 33438000 29639000 30647000 0 0 0 47588000 41102000 58910000 0 0 0 62721000 63099000 66682000 0 0 0 60698000 63973000 58110000 0 0 0 3528 325 3432 67073;67074;67075;67076;67077;67078;67079;67080;67081;67082;67083;67084 40865;40866;40867;40868;40869;40870;40871 40869 7 DLPEDIYVVIEIPANADPIKYEIDKESGALFVDR Unmodified 3845.9615 0.9615024 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 55.272 53.799 3;4 3.5942E-34 26511 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 199.22 190.39 1190900000 63362000 58328000 51592000 0 2710500 0 105500000 96996000 97285000 0 0 0 83390000 93030000 86126000 0 0 0 151870000 158400000 142270000 0 0 0 3529 325 3433 67085;67086;67087;67088;67089;67090;67091;67092;67093;67094;67095;67096;67097;67098;67099;67100;67101;67102;67103;67104;67105;67106;67107;67108 40872;40873;40874;40875;40876;40877 40873 6 DLPITTK Unmodified 786.44872 0.4487195 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 20.848 20.979 2 0.091209 8271 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 55.504 8.7378 109370000 35277000 37597000 32999000 0 0 0 0 0 0 0 1610800 1886300 0 0 0 0 0 0 0 0 0 0 0 0 3530 198 3434 67109;67110;67111;67112;67113 40878;40879 40879 2 DLPLIASNFR Unmodified 1144.6241 0.6240581 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.263 44.767 2 6.1206E-08 21842 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 206.09 189.89 1121900000 271950000 266160000 236890000 1892500 2321300 1828800 3084200 2196000 3663500 0 0 0 23264000 17977000 19970000 0 0 0 88789000 93615000 88262000 0 0 0 3531 238 3435 67114;67115;67116;67117;67118;67119;67120;67121;67122;67123;67124;67125;67126;67127;67128 40880;40881;40882;40883;40884;40885;40886;40887;40888 40880 9 DLPTSGSAAK Unmodified 945.47673 0.47672516 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.687 13.234 2 0.020192 3675 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 60.91 28.556 467180000 40053000 38123000 38010000 0 0 0 43402000 42024000 0 4067300 2949000 2806600 47125000 47064000 41711000 0 5778700 3653100 0 52306000 48242000 2687800 4202500 2973000 3532 124 3436 67129;67130;67131;67132;67133;67134;67135;67136;67137;67138;67139;67140;67141;67142;67143;67144;67145;67146 40889;40890;40891 40890 3 DLQESVMSIR Unmodified 1176.5809 0.58087266 160 P07363 cheA Chemotaxis protein CheA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 36.031 34.477 2 0.00019061 11997 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 122.13 105.93 12767000 0 0 3187500 3477300 3028500 3073300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3533 160 3437 67147;67148;67149;67150 40892;40893;40894 40894 3 DLQQTTQLLDPAK Unmodified 1469.7726 0.77257283 83 P03841 malM Maltose operon periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.912 36.388 2 1.8387E-12 16900 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 192.44 187.13 2624200000 165650000 150210000 137270000 0 0 2635100 0 221150000 221660000 11550000 11353000 12257000 219430000 185720000 183650000 4327900 2893700 4173400 369420000 369730000 346450000 0 4662500 0 3534 83 3438 67151;67152;67153;67154;67155;67156;67157;67158;67159;67160;67161;67162;67163;67164;67165;67166;67167;67168;67169 40895;40896;40897;40898;40899;40900;40901;40902;40903;40904;40905;40906;40907;40908;40909;40910;40911;40912 40910 17 DLRDCLLIQLSQFDK Unmodified 1862.956 0.95603328 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 2 2 1 1 54.839 54.182 2;3 1.3227E-14 21033 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 217.19 194.27 273120000 2842500 0 0 0 0 0 0 2521100 0 0 0 0 0 0 0 77332000 81311000 108750000 213300 0 145770 0 0 0 3535 1249 3439 67170;67171;67172;67173;67174;67175;67176;67177;67178;67179;67180 40913;40914;40915;40916;40917;40918 40914 6 DLRPALK Unmodified 811.49159 0.49158736 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 14.93 15.372 2 0.002765 3902 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 127.12 82.145 16320000000 249840000 0 0 6053700 4903700 5322700 176280000 180210000 180540000 1047900000 995970000 1096800000 183700000 171350000 178810000 3365400000 1527100000 1672700000 255060000 242600000 265220000 1356400000 1450700000 1707500000 3536 458 3440 67181;67182;67183;67184;67185;67186;67187;67188;67189;67190;67191;67192;67193;67194;67195;67196;67197;67198;67199;67200;67201;67202;67203;67204;67205;67206;67207;67208;67209;67210 40919;40920;40921;40922;40923;40924;40925;40926;40927;40928;40929;40930;40931;40932;40933;40934;40935;40936;40937;40938;40939;40940;40941;40942;40943;40944;40945;40946;40947;40948 40919 30 DLSDVTLGQFAGK Unmodified 1349.6827 0.68269519 400 P0A862 tpx Thiol peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 1 1 1 3 2 3 1 1 2 3 3 2 2 3 1 1 44.222 42.632 2;3 3.6277E-12 20700 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 207.83 176.76 18199000000 2095400000 2078300000 2041000000 6918800 4403800 3479700 1566400000 1318500000 1238600000 0 4314200 3602700 1395700000 1342200000 1296700000 0 0 0 1095000000 1127000000 1574400000 2794800 3819500 0 3537 400 3441 67211;67212;67213;67214;67215;67216;67217;67218;67219;67220;67221;67222;67223;67224;67225;67226;67227;67228;67229;67230;67231;67232;67233;67234;67235;67236;67237;67238;67239;67240;67241;67242;67243;67244;67245;67246;67247 40949;40950;40951;40952;40953;40954;40955;40956;40957;40958;40959;40960;40961;40962;40963;40964;40965;40966;40967;40968;40969;40970;40971;40972;40973;40974;40975;40976;40977;40978;40979;40980;40981 40959 31 DLSEELQILEAGLFSR Unmodified 1818.9363 0.9363437 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 3 2 3 2 2 1 2 2 2 2 2 2 3 2 2 55.998 54.755 2;3 1.1703E-88 21909 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 342.32 306.36 5049900000 10702000 11031000 3178700 0 0 0 6251800 4369200 4184900 298960000 311320000 275630000 13225000 14883000 6670900 982300000 846400000 893830000 13389000 14070000 12555000 405540000 467600000 453860000 3538 463 3442 67248;67249;67250;67251;67252;67253;67254;67255;67256;67257;67258;67259;67260;67261;67262;67263;67264;67265;67266;67267;67268;67269;67270;67271;67272;67273;67274;67275;67276;67277;67278;67279;67280;67281;67282;67283;67284;67285;67286;67287;67288;67289 40982;40983;40984;40985;40986;40987;40988;40989;40990;40991;40992;40993;40994;40995;40996;40997;40998;40999;41000;41001 40994 18 DLSGFVDGTENPAGEETR Unmodified 1892.8388 0.8388145 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.77 37.096 2 3.1847E-46 17988 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 270.45 270.45 357650000 22329000 23613000 21584000 0 0 0 33936000 32969000 25631000 0 0 0 38456000 30173000 27299000 0 0 0 35839000 33607000 32210000 0 0 0 3539 1868 3443 67290;67291;67292;67293;67294;67295;67296;67297;67298;67299;67300;67301 41002;41003;41004;41005;41006;41007;41008;41009;41010;41011 41004 10 DLSGFVDGTENPAGEETRR Unmodified 2048.9399 0.93992552 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 31.788 30.418 2;3 1.7234E-55 13849 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 282.71 277.63 1225300000 71453000 73311000 74996000 0 1262700 1129400 141260000 130650000 138840000 0 0 0 98268000 81762000 80501000 0 0 0 108720000 119610000 103560000 0 0 0 3540 1868 3444 67302;67303;67304;67305;67306;67307;67308;67309;67310;67311;67312;67313;67314;67315;67316;67317;67318;67319;67320;67321;67322;67323;67324;67325;67326;67327 41012;41013;41014;41015;41016;41017;41018;41019;41020;41021;41022;41023;41024;41025;41026;41027;41028;41029;41030;41031;41032;41033;41034 41030 22 DLSGIGIPVAK Unmodified 1068.6179 0.61791009 580 P0AA95 yacC Uncharacterized protein YacC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.695 38.022 2 0.0027467 18466 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 69.825 60.912 119570000 13431000 10474000 12206000 0 0 0 8915300 7796700 7813400 0 0 0 7876800 7954100 5712400 0 0 0 13011000 13713000 10665000 0 0 0 3541 580 3445 67328;67329;67330;67331;67332;67333;67334;67335;67336;67337;67338;67339 41035;41036;41037;41038;41039;41040;41041;41042 41035 0 DLSHGMQR Unmodified 942.43415 0.43414884 310 P0A746 msrB Peptide methionine sulfoxide reductase MsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.425 12.293 2 0.0002093 3212 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 152.31 147.96 806110000 104880000 83878000 83284000 2586900 2028200 0 47812000 44152000 51078000 0 0 0 58918000 62919000 60591000 0 0 0 66337000 68852000 68797000 0 0 0 3542 310 3446 67340;67341;67342;67343;67344;67345;67346;67347;67348;67349;67350;67351;67352;67353 41043;41044;41045;41046;41047;41048;41049;41050;41051;41052;41053;41054 41044 12 DLSIDLNR Unmodified 944.49271 0.49270958 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 32.383 31.251 2 0.0016218 14757 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.32 76.705 86447000 0 46947000 39500000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3543 49 3447 67354;67355;67356 41055;41056;41057 41056 3 DLSIIATPPAR Unmodified 1152.6503 0.65027285 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.944 35.287 2 0.00019201 16365 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 105.52 92.993 147680000 19668000 16970000 15232000 0 0 0 13235000 8586400 9983400 0 0 0 8247700 9265900 6770800 0 0 0 13495000 12628000 13597000 0 0 0 3544 1355 3448 67357;67358;67359;67360;67361;67362;67363;67364;67365;67366;67367;67368 41058;41059;41060;41061;41062;41063;41064;41065;41066 41065 2 DLSITFCGVK Unmodified 1138.5692 0.56924534 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.391 39.403 2 0.00043055 19659 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.56 96.828 193580000 0 0 0 0 0 0 49462000 46885000 47892000 2660000 2222800 2167400 11787000 9455400 10749000 0 0 0 4947700 5354300 0 0 0 0 3545 1276 3449 67369;67370;67371;67372;67373;67374;67375;67376;67377;67378;67379 41067;41068;41069 41067 3 DLSPLWEMYK Unmodified 1280.6111 0.61111015 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.979 50.689 2 0.00057272 23886 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 108.74 103.78 1853000000 223780000 247050000 207460000 2910300 2501800 3221800 129920000 129680000 115920000 0 964820 2053800 121050000 100550000 78804000 0 0 0 155100000 160160000 167820000 2123900 0 1907800 3546 228 3450 67380;67381;67382;67383;67384;67385;67386;67387;67388;67389;67390;67391;67392;67393;67394;67395;67396;67397;67398 41070;41071;41072;41073;41074;41075;41076;41077;41078;41079;41080;41081;41082;41083 41081 14 DLSTCAQGK Unmodified 978.44404 0.44404482 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.854 12.686 2 0.00082849 3308 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 100.19 69.576 163380000 10668000 11345000 11132000 0 0 0 16700000 15246000 12727000 0 0 0 10894000 13301000 14009000 0 0 0 19382000 12581000 15390000 0 0 0 3547 1966 3451 67399;67400;67401;67402;67403;67404;67405;67406;67407;67408;67409;67410 41084;41085;41086;41087 41086 2 DLSWITQHAEPFGIEITVR Unmodified 2211.1324 0.13241774 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 1 2 2 1 2 2 2 1 54.353 52.914 2;3 7.2709E-23 26206 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 189.55 181.56 705860000 72664000 65376000 73305000 2179500 0 0 55022000 40265000 12122000 0 0 0 69259000 73064000 15629000 0 0 0 93282000 73396000 56855000 3437800 0 0 3548 1294 3452 67411;67412;67413;67414;67415;67416;67417;67418;67419;67420;67421;67422;67423;67424;67425;67426;67427;67428;67429;67430;67431;67432;67433;67434 41088;41089;41090;41091 41089 4 DLTAADGQTR Unmodified 1046.4993 0.49925152 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.15 13.89 2 0.00053633 4230 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.668 66.414 911590000 70313000 67408000 59854000 1392600 0 862120 81110000 82225000 87645000 0 1531400 1809700 76752000 65454000 67283000 0 0 544700 85655000 76590000 85161000 0 0 0 3549 1903 3453 67435;67436;67437;67438;67439;67440;67441;67442;67443;67444;67445;67446;67447;67448;67449;67450;67451;67452 41092;41093;41094;41095;41096 41094 4 DLTAEIWFGR Unmodified 1206.6033 0.60332266 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.405 51.965 2 1.8793E-09 25650 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 199.29 191.64 472120000 40676000 36036000 33738000 0 0 0 52110000 46459000 49990000 0 0 0 32450000 28525000 26791000 0 0 0 42676000 41763000 40911000 0 0 0 3550 1100 3454 67453;67454;67455;67456;67457;67458;67459;67460;67461;67462;67463;67464 41097;41098;41099;41100;41101;41102;41103;41104;41105;41106 41099 10 DLTAEQAAER Unmodified 1102.5255 0.52546627 203 P09148 galT Galactose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 14.978 15.74 2 7.7291E-06 5381 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 155.07 99.195 127560000 12749000 11438000 13664000 0 0 0 17218000 15131000 20357000 0 0 0 6459400 0 0 0 0 0 11552000 7771100 11221000 0 0 0 3551 203 3455 67465;67466;67467;67468;67469;67470;67471;67472;67473;67474 41107;41108;41109;41110;41111;41112;41113;41114 41107 8 DLTDAAVK Unmodified 831.4338 0.43379771 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.484 17.923 2 0.026418 6551 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.757 32.822 1651800000 86759000 85724000 77165000 30564000 27266000 26990000 157530000 169760000 147320000 30902000 30821000 31254000 91705000 101440000 87035000 7279100 8303200 8341500 125210000 134970000 121440000 21135000 21887000 21044000 3552 245 3456 67475;67476;67477;67478;67479;67480;67481;67482;67483;67484;67485;67486;67487;67488;67489;67490;67491;67492;67493;67494;67495;67496;67497;67498 41115;41116;41117;41118;41119;41120;41121;41122;41123;41124;41125;41126;41127;41128;41129 41118 15 DLTDSTVLR Unmodified 1018.5295 0.52948901 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.367 27.085 2 0.00010145 11972 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 135.77 110.95 1611500000 200500000 169350000 170180000 924850 1263000 1093800 80440000 77373000 81508000 0 0 0 111980000 119280000 120600000 0 0 0 162250000 155600000 159170000 0 0 0 3553 638 3457 67499;67500;67501;67502;67503;67504;67505;67506;67507;67508;67509;67510;67511;67512;67513 41130;41131;41132;41133;41134;41135;41136;41137;41138;41139;41140;41141 41140 12 DLTEHQR Unmodified 897.43044 0.43044367 1654 P63020 nfuA Fe/S biogenesis protein NfuA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 1 1 1 1 1 9.8986 10.72 2 1.1815E-05 1396 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.21 99.862 880190000 193250000 169640000 122460000 0 0 0 8499200 0 7509800 0 0 0 42708000 49435000 31510000 0 0 0 71013000 81491000 102670000 0 0 0 3554 1654 3458 67514;67515;67516;67517;67518;67519;67520;67521;67522;67523;67524;67525;67526;67527 41142;41143;41144;41145;41146;41147;41148;41149;41150;41151;41152 41144 11 DLTGDPWGGR Unmodified 1072.4938 0.49377221 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.223 30.635 2 0.00027586 14797 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.28 110.35 985630000 43673000 47499000 37078000 4349600 0 0 57652000 55205000 56244000 18027000 13137000 14830000 73865000 74415000 74776000 0 0 0 116410000 117950000 133090000 16008000 17107000 14314000 3555 660 3459 67528;67529;67530;67531;67532;67533;67534;67535;67536;67537;67538;67539;67540;67541;67542;67543;67544;67545;67546 41153;41154;41155;41156;41157;41158;41159;41160;41161;41162;41163;41164;41165;41166;41167;41168;41169;41170 41156 18 DLTKPAVLEVITPTQVR Unmodified 1879.0779 0.077862976 574 P0AA43 rsuA Ribosomal small subunit pseudouridine synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 43.264 41.6 2;3 6.4759E-09 20368 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.96 118.09 217290000 49501000 42149000 40605000 1261700 1361200 1305800 10132000 8536100 9036500 3726400 4224700 3187500 3865400 6243800 4025900 0 0 0 7872900 7287000 9413700 0 1695700 1857600 3556 574 3460 67547;67548;67549;67550;67551;67552;67553;67554;67555;67556;67557;67558;67559;67560;67561;67562;67563;67564;67565;67566;67567;67568;67569;67570 41171;41172;41173;41174 41171 4 DLTPEVSFR Unmodified 1062.5346 0.53457439 1153 P18776 dmsB Anaerobic dimethyl sulfoxide reductase chain B yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 35.029 33.511 2 0.030124 16262 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 70.919 62.5 43307000 0 0 0 0 0 0 5685900 7186500 5972500 0 0 0 3876000 4602400 4804600 0 0 0 4132300 4175800 2871100 0 0 0 3557 1153 3461 67571;67572;67573;67574;67575;67576;67577;67578;67579 41175 41175 0 DLTQAWAVAMALGVEDK Unmodified 1816.9029 0.90293508 857 P0AEG4 dsbA Thiol:disulfide interchange protein DsbA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 2 2 2 2 1 2 55.813 54.368 2;3 1.7713E-24 26803 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 217.68 209.77 2228200000 233260000 220970000 199070000 2548800 0 0 49278000 29287000 23408000 0 0 0 217710000 240540000 187070000 0 0 0 225280000 252840000 346970000 0 0 0 3558 857 3462 67580;67581;67582;67583;67584;67585;67586;67587;67588;67589;67590;67591;67592;67593;67594;67595;67596;67597;67598;67599;67600;67601 41176;41177;41178;41179;41180;41181;41182 41176 6 DLTVFDATCPLVTK Unmodified 1578.7963 0.79634474 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.96 48.554 2 4.135E-06 24061 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 141.08 114.97 650820000 55484000 57551000 55210000 0 0 0 54769000 45412000 52047000 0 0 0 53632000 45100000 44367000 0 0 0 59974000 63697000 63580000 0 0 0 3559 1650 3463 67602;67603;67604;67605;67606;67607;67608;67609;67610;67611;67612;67613 41183;41184;41185;41186;41187;41188;41189;41190 41183 4 DLVESAPAALK Unmodified 1112.6077 0.60773933 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 30.299 28.73 2;3 0.0015853 10743 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 93.649 76.873 33174000000 3516000000 3942900000 3278700000 165990000 139930000 132970000 1730900000 1737700000 1622800000 365880000 359020000 346160000 2092800000 2254000000 1819700000 0 0 0 2868900000 2993300000 2901500000 302330000 282220000 320930000 3560 351 3464 67614;67615;67616;67617;67618;67619;67620;67621;67622;67623;67624;67625;67626;67627;67628;67629;67630;67631;67632;67633;67634;67635;67636;67637;67638;67639;67640;67641;67642;67643;67644;67645;67646;67647;67648;67649;67650;67651;67652;67653 41191;41192;41193;41194;41195;41196;41197;41198;41199;41200;41201;41202;41203;41204;41205;41206;41207;41208;41209;41210;41211;41212;41213;41214;41215;41216;41217;41218;41219;41220;41221;41222;41223 41193 33 DLVESAPAALKEGVSK Unmodified 1612.8672 0.8672015 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 29.874 28.391 2;3 1.1467E-06 10496 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 100.43 95.958 201870000 0 0 0 18627000 16508000 16242000 0 0 0 18535000 17279000 16155000 0 0 0 14746000 8851900 8367900 0 0 0 23455000 20873000 22233000 3561 351 3465 67654;67655;67656;67657;67658;67659;67660;67661;67662;67663;67664;67665;67666;67667;67668;67669;67670;67671;67672;67673;67674;67675 41224;41225;41226;41227;41228;41229;41230;41231;41232;41233;41234 41227 11 DLVESVMQR Unmodified 1075.5332 0.53319418 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.347 33.825 2 1.3106E-05 16158 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 162.5 136.61 1881800000 201670000 199340000 182620000 1500000 0 0 147660000 144570000 154290000 0 0 0 105820000 121280000 125220000 0 0 0 185250000 168610000 144010000 0 0 0 3562 58 3466 67676;67677;67678;67679;67680;67681;67682;67683;67684;67685;67686;67687;67688 41235;41236;41237;41238;41239;41240;41241;41242;41243;41244;41245;41246 41239 12 DLVGFGVENAPR Unmodified 1272.6463 0.64625011 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.811 36.929 2 0.063847 14500 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 52.79 48.177 213440000 20056000 11439000 10800000 0 0 0 17477000 15188000 16229000 1881300 1662100 1666800 14495000 13524000 13579000 0 0 0 25882000 22580000 22547000 1348200 1491000 1591100 3563 1230 3467 67689;67690;67691;67692;67693;67694;67695;67696;67697;67698;67699;67700;67701;67702;67703;67704;67705;67706 41247;41248 41247 0 DLVHAIPLYAIK Unmodified 1351.7864 0.7863724 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 45.445 43.942 2;3 4.4885E-06 21196 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.59 148.99 10206000000 1446400000 1369400000 1210900000 14219000 11885000 8569100 558390000 575760000 524400000 10448000 11481000 5327500 512640000 473880000 447650000 5298600 4524400 5832800 956810000 1080800000 934870000 12859000 12642000 10642000 3564 1444 3468 67707;67708;67709;67710;67711;67712;67713;67714;67715;67716;67717;67718;67719;67720;67721;67722;67723;67724;67725;67726;67727;67728;67729;67730;67731;67732;67733;67734;67735;67736;67737;67738;67739;67740;67741;67742;67743;67744;67745;67746;67747;67748;67749 41249;41250;41251;41252;41253;41254;41255;41256;41257;41258;41259;41260;41261;41262;41263;41264;41265;41266;41267;41268;41269;41270;41271;41272;41273;41274;41275;41276;41277;41278;41279;41280 41274 32 DLVIGTGAPK Unmodified 969.5495 0.54949617 109 P05194 aroD 3-dehydroquinate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 25.743 24.846 2 0.0066143 10628 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 66.621 56.71 165380000 26644000 25725000 24998000 0 0 0 0 0 0 0 0 0 17823000 15143000 14506000 0 0 0 0 22812000 17727000 0 0 0 3565 109 3469 67750;67751;67752;67753;67754;67755;67756;67757 41281;41282;41283;41284;41285;41286;41287 41287 0 DLVNDHNIIQVDMR Unmodified 1680.8254 0.82535346 1766 P75736 ybfF Esterase YbfF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 36.853 35.073 3 9.3119E-09 17336 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.05 129.42 144540000 0 0 0 1045900 0 713470 18999000 22877000 21197000 0 0 0 16955000 0 0 0 0 0 21645000 19480000 21626000 0 0 0 3566 1766 3470 67758;67759;67760;67761;67762;67763;67764;67765;67766 41288;41289;41290;41291;41292;41293 41288 6 DLVNQDGGENWAK Unmodified 1444.6583 0.65827136 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.107 26.841 2 3.5928E-12 12622 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 182.28 171.53 311050000 5564700 5757400 7240600 0 0 0 35925000 47413000 42210000 0 0 3060900 39532000 36428000 37840000 0 0 0 16034000 16703000 16323000 1017600 0 0 3567 25 3471 67767;67768;67769;67770;67771;67772;67773;67774;67775;67776;67777;67778;67779;67780 41294;41295;41296 41294 2 DLVVDMGQFYAQYEK Unmodified 1804.8342 0.83418681 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.256 51.831 2 1.213E-11 20688 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 210.15 200.72 519670000 27052000 20824000 20311000 19678000 18336000 22458000 11960000 14113000 15075000 15610000 15385000 17593000 26635000 27455000 26351000 0 0 0 51733000 44934000 50196000 27959000 22655000 23361000 3568 150 3472 67781;67782;67783;67784;67785;67786;67787;67788;67789;67790;67791;67792;67793;67794;67795;67796;67797;67798;67799;67800;67801 41297;41298;41299;41300;41301;41302;41303;41304;41305;41306;41307;41308;41309;41310;41311;41312;41313 41304 15 DLVVHPGAGNPDGTVLNALLHYYPPIADVPR Unmodified 3279.704 0.70404634 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.438 53.047 4 5.8407E-13 26151 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 126.64 121.27 278190000 46109000 50357000 49788000 0 0 0 0 0 0 0 0 0 17777000 19659000 18286000 0 0 0 25739000 26408000 24071000 0 0 0 3569 1429 3473 67802;67803;67804;67805;67806;67807;67808;67809;67810 41314 41314 1 DLVVSLAYQVR Unmodified 1261.703 0.7030367 532 P0A9K9 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 2 3 4 2 2 2 5 3 4 2 3 4 2 1 2 3 3 2 3 3 4 40.749 39.689 2;3 1.3544E-06 22026 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 183.65 177.73 2149500000 72296000 67089000 98293000 52283000 39716000 49416000 224520000 208670000 218550000 83386000 67652000 61799000 122670000 132990000 162200000 16076000 5435400 6475800 122560000 120320000 108700000 18833000 37639000 51951000 3570 532 3474 67811;67812;67813;67814;67815;67816;67817;67818;67819;67820;67821;67822;67823;67824;67825;67826;67827;67828;67829;67830;67831;67832;67833;67834;67835;67836;67837;67838;67839;67840;67841;67842;67843;67844;67845;67846;67847;67848;67849;67850;67851;67852;67853;67854;67855;67856;67857;67858;67859;67860;67861;67862;67863;67864;67865;67866;67867;67868;67869;67870;67871;67872;67873;67874;67875;67876;67877;67878 41315;41316;41317;41318;41319;41320;41321;41322;41323;41324;41325;41326;41327;41328;41329;41330;41331;41332;41333;41334;41335;41336;41337;41338;41339;41340;41341;41342;41343;41344;41345;41346;41347;41348;41349;41350;41351;41352;41353;41354;41355;41356;41357;41358;41359;41360;41361;41362;41363;41364;41365;41366;41367;41368;41369;41370;41371;41372;41373;41374;41375;41376;41377;41378;41379;41380;41381;41382;41383;41384;41385;41386;41387;41388;41389;41390;41391;41392;41393;41394;41395;41396;41397;41398;41399;41400;41401;41402;41403;41404;41405;41406;41407;41408;41409;41410;41411 41354 77 DLWVASSCSLLHSPIDLSVETR Unmodified 2484.2319 0.23187379 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 53.67 52.21 2;3 1.036E-118 25964 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 475.86 473.37 1154100000 0 0 0 0 0 0 309050000 310800000 344330000 0 0 0 20615000 21962000 14813000 0 0 0 46951000 41210000 44340000 0 0 0 3571 1265 3475 67879;67880;67881;67882;67883;67884;67885;67886;67887;67888;67889;67890;67891;67892;67893;67894;67895 41412;41413;41414;41415;41416;41417;41418;41419;41420;41421;41422;41423 41413 12 DLWWHDLVEQASDQHQAEEMNAEDPLFILYTSGSTGKPK Unmodified 4485.0859 0.085944419 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 54.443 53.055 4 8.4821E-38 26201 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 191.25 191.25 317090000 96473000 99774000 88961000 0 0 0 0 0 0 0 0 0 0 0 4692300 0 0 0 9816100 9984500 7387600 0 0 0 3572 1305 3476 67896;67897;67898;67899;67900;67901;67902 41424 41424 1 DLYEAILELFDQEL Unmodified 1709.84 0.83998369 231 P0A6D0 argR Arginine repressor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 52.774 51.422 3 0.17041 25164 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 5.5411 3.7507 58156000 2185800 0 2761400 0 0 0 0 7060500 4685900 0 0 0 6881000 6886900 0 0 0 0 10065000 8410400 9219500 0 0 0 3573 231 3477 67903;67904;67905;67906;67907;67908;67909;67910;67911 41425 41425 1 DLYGAGGSNAICADVQHK Unmodified 1874.8581 0.85811015 745 P0ACS7 rpiR HTH-type transcriptional regulator RpiR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.576 24.503 3 0.0026477 10975 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 56.959 54.834 76003000 5407700 10403000 6993000 0 0 0 7632200 4376600 7290700 0 0 0 4252500 3583900 5016200 0 0 0 6268600 6310500 8467900 0 0 0 3574 745 3478 67912;67913;67914;67915;67916;67917;67918;67919;67920;67921;67922;67923 41426 41426 1 DLYGHGR Unmodified 816.38785 0.38785057 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.348 11.95 2 0.0073714 2540 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 91.584 80.023 510560000 17218000 18648000 19775000 11220000 11180000 9643400 0 16882000 17751000 24730000 21805000 22876000 17204000 15324000 10635000 8415000 3680100 4737300 52393000 48951000 48349000 36158000 35427000 37558000 3575 215 3479 67924;67925;67926;67927;67928;67929;67930;67931;67932;67933;67934;67935;67936;67937;67938;67939;67940;67941;67942;67943;67944;67945;67946 41427;41428;41429;41430;41431;41432;41433;41434;41435;41436 41429 9 DMALIGQALIR Unmodified 1199.6696 0.66962808 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By MS/MS 1 49.6 47.896 2 1.0996E-07 23745 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.54 115.02 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3576 844 3480 67947 41437 41437 1 DMALLGK Unmodified 746.39966 0.39966081 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.779 26.554 2 0.021819 9848 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 75.311 64.196 189830000 6063300 7749800 6121200 4085700 2680200 3565500 25246000 21902000 20642000 9180100 8236600 7949700 7236500 6727000 7618900 2617700 0 1873600 11110000 9423800 12138000 0 3556600 4103600 3577 189 3481 67948;67949;67950;67951;67952;67953;67954;67955;67956;67957;67958;67959;67960;67961;67962;67963;67964;67965;67966;67967;67968;67969;67970;67971 41438;41439;41440;41441;41442;41443;41444;41445;41446;41447;41448;41449;41450;41451;41452;41453;41454 41442 17 DMAQMCK Unmodified 882.33978 0.33977945 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.843 13.683 2 0.014935 4163 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 82.263 82.263 670780000 49822000 47820000 42220000 0 0 0 69603000 63545000 67673000 0 0 0 55496000 51780000 56596000 0 0 0 52243000 55125000 58857000 0 0 0 3578 258 3482 67972;67973;67974;67975;67976;67977;67978;67979;67980;67981;67982;67983 41455;41456;41457 41455 3 DMATGEIEVLASSLTIINR Unmodified 2032.0511 0.051055878 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 2 2 2 2 2 55.842 54.371 2;3 2.4693E-15 25820 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 156.67 151.77 570780000 24584000 13685000 41864000 0 0 0 13282000 18029000 27065000 0 0 0 103740000 158940000 40553000 0 0 0 36594000 44420000 48019000 0 0 0 3579 1189 3483 67984;67985;67986;67987;67988;67989;67990;67991;67992;67993;67994;67995;67996;67997;67998;67999;68000;68001;68002;68003;68004;68005 41458;41459;41460;41461;41462;41463;41464;41465;41466;41467 41467 10 DMEADAQK Unmodified 906.3753 0.37529656 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.959 11.774 2 0.0031505 2757 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 94.539 87.188 315410000 18798000 22372000 23359000 0 0 0 29726000 28257000 25831000 0 0 0 26162000 26163000 24449000 0 0 0 30693000 27805000 31795000 0 0 0 3580 124 3484 68006;68007;68008;68009;68010;68011;68012;68013;68014;68015;68016;68017 41468;41469;41470;41471;41472;41473;41474;41475 41475 8 DMEFVQYHPTGLPGSGILMTEGCR Unmodified 2694.224 0.22402799 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 49.85 48.473 2;3 6.9548E-60 23883 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 252.83 246.92 1881100000 32266000 27853000 28541000 1316900 1908500 1521800 227210000 268050000 224520000 35064000 35648000 29715000 204030000 209500000 182900000 4125300 0 0 124610000 118670000 111090000 3452500 5210600 3909400 3581 25 3485 68018;68019;68020;68021;68022;68023;68024;68025;68026;68027;68028;68029;68030;68031;68032;68033;68034;68035;68036;68037;68038;68039;68040;68041;68042;68043;68044;68045;68046;68047;68048 41476;41477;41478;41479;41480;41481;41482;41483;41484;41485;41486;41487;41488;41489;41490;41491;41492;41493;41494;41495 41485 19 DMEFVQYHPTGLPGSGILMTEGCRGEGGILVNK Unmodified 3561.7054 0.7054446 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 49.147 47.365 4 0.15908 18867 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 14.085 12.483 27418000 0 0 0 0 0 0 0 0 0 8216300 12030000 7171500 0 0 0 0 0 0 0 0 0 0 0 0 3582 25 3486 68049;68050;68051 41496 41496 1 DMEPEDLLK Unmodified 1088.506 0.50597638 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.342 37.447 2 0.0026179 18504 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.498 84.498 1217000000 184720000 201160000 172590000 3449500 3581900 3407700 126300000 126610000 116750000 3812900 3590000 2652900 50714000 0 0 0 0 0 73095000 72227000 69575000 1235700 0 1558800 3583 908 3487 68052;68053;68054;68055;68056;68057;68058;68059;68060;68061;68062;68063;68064;68065;68066;68067;68068;68069 41497;41498;41499;41500;41501;41502;41503;41504;41505;41506;41507;41508 41499 11 DMFEQAK Unmodified 867.37965 0.37965365 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.059 19.36 2 0.0049222 7073 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 95.793 82.585 409060000 11217000 12250000 10510000 3130900 3039100 2571000 53774000 52637000 54035000 9471900 7547100 6712300 0 31163000 0 1322200 0 1163700 43877000 43892000 45685000 5428900 4875500 4751800 3584 595 3488 68070;68071;68072;68073;68074;68075;68076;68077;68078;68079;68080;68081;68082;68083;68084;68085;68086;68087;68088;68089;68090;68091;68092 41509;41510;41511;41512;41513;41514;41515;41516;41517;41518;41519 41517 11 DMFLDDQGNPDSK Unmodified 1480.614 0.61402328 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.647 30.291 2 0.019013 14245 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 59.198 59.198 137140000 15464000 16127000 10219000 0 0 0 12103000 13622000 11985000 0 0 0 7553000 6360100 10059000 0 0 0 10282000 11115000 12253000 0 0 0 3585 1155 3489 68093;68094;68095;68096;68097;68098;68099;68100;68101;68102;68103;68104 41520;41521;41522 41521 0 DMGGGFLQK Unmodified 951.4484 0.44840192 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 1 27.811 26.554 2 0.00077017 11703 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.69 96.211 961470000 30429000 29127000 27090000 3772600 4300000 3672100 125440000 121490000 111960000 36432000 41535000 33651000 66607000 60325000 61032000 0 0 0 56380000 50031000 68056000 9838800 9188900 11110000 3586 1747 3490 68105;68106;68107;68108;68109;68110;68111;68112;68113;68114;68115;68116;68117;68118;68119;68120;68121;68122;68123;68124;68125;68126;68127;68128;68129;68130;68131;68132 41523;41524;41525;41526;41527;41528;41529;41530;41531;41532;41533;41534;41535 41533 13 DMGGLPDALFVIDADHEHIAIK Unmodified 2376.1784 0.17838166 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 3 2 3 3 3 1 1 1 3 4 3 2 1 1 4 3 3 1 1 1 51.391 50.215 2;3;4 7.7696E-15 24345 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 189.33 184.44 10077000000 1360600000 1393000000 1147400000 38029000 38174000 36590000 358690000 332670000 351870000 83295000 134750000 107950000 599210000 519060000 526580000 128590000 97234000 107790000 850800000 807660000 845180000 74484000 70436000 67180000 3587 373 3491 68133;68134;68135;68136;68137;68138;68139;68140;68141;68142;68143;68144;68145;68146;68147;68148;68149;68150;68151;68152;68153;68154;68155;68156;68157;68158;68159;68160;68161;68162;68163;68164;68165;68166;68167;68168;68169;68170;68171;68172;68173;68174;68175;68176;68177;68178;68179;68180;68181;68182;68183;68184;68185;68186 41536;41537;41538;41539;41540;41541;41542;41543;41544;41545;41546;41547;41548;41549;41550;41551;41552;41553;41554;41555;41556;41557;41558;41559;41560;41561;41562;41563;41564;41565;41566;41567;41568;41569;41570;41571;41572;41573;41574;41575;41576;41577;41578;41579;41580;41581;41582;41583;41584;41585 41577 50 DMGGLPDALFVIDADHEHIAIK Oxidation (M) 2392.1733 0.17329628 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 1 1 1 1 1 1 2 1 1 1 1 2 49.397 48.05 4 0.0032851 23291 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 53.342 52.239 150550000 48424000 17894000 20623000 679730 462790 0 0 0 0 4948900 4064300 0 14833000 5856900 0 0 0 0 6578500 13218000 9596900 0 0 3373500 3588 373 3491 68187;68188;68189;68190;68191;68192;68193;68194;68195;68196;68197;68198;68199;68200;68201;68202 41586;41587 41586 158 2 DMGNVEK Unmodified 791.34835 0.34835353 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.369 12.261 2 0.11401 3054 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 51.335 35.699 374860000 24965000 36516000 0 1698200 1287500 1442600 41083000 38361000 39210000 0 0 0 53155000 45027000 35875000 0 0 0 28528000 0 27708000 0 0 0 3589 540 3492 68203;68204;68205;68206;68207;68208;68209;68210;68211;68212;68213;68214;68215 41588;41589 41589 2 DMGTVVFPDAPVK Unmodified 1374.6853 0.68533773 247 P0A6I0 cmk Cytidylate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 42.776 41.245 2 8.0454E-09 20113 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 164.43 155.01 422960000 0 66951000 58601000 1788300 1668800 1847700 0 0 0 0 0 0 62981000 0 0 0 0 0 76105000 79343000 73671000 0 0 0 3590 247 3493 68216;68217;68218;68219;68220;68221;68222;68223;68224 41590;41591;41592;41593;41594;41595 41590 6 DMLEGVMDIADQR Unmodified 1491.6698 0.66976402 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 1 2 2 2 2 2 2 2 2 2 51.891 50.639 2;3 1.9543E-09 24781 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.48 172.19 382650000 49228000 50337000 49272000 750550 462610 0 24967000 25773000 24050000 0 0 0 23930000 23677000 21820000 0 0 0 26677000 29391000 32310000 0 0 0 3591 839 3494 68225;68226;68227;68228;68229;68230;68231;68232;68233;68234;68235;68236;68237;68238;68239;68240;68241;68242;68243;68244;68245;68246;68247;68248;68249;68250;68251 41596;41597;41598;41599;41600;41601;41602;41603 41601 7 DMLYPER Oxidation (M) 938.41677 0.41676744 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 5 5 2 3 5 4 4 19.579 19.363 2 0.021296 5359 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 80.462 77.372 242370000 0 0 0 0 0 0 0 0 0 43533000 37759000 34360000 0 0 0 28077000 11267000 11200000 0 0 0 24279000 26289000 25607000 3592 1616 3495 68252;68253;68254;68255;68256;68257;68258;68259;68260;68261;68262;68263;68264;68265;68266;68267;68268;68269;68270;68271;68272;68273;68274;68275;68276;68277;68278;68279;68280;68281;68282;68283;68284;68285;68286;68287;68288 41604;41605;41606;41607;41608;41609;41610;41611;41612;41613;41614;41615;41616;41617;41618;41619;41620;41621;41622;41623;41624;41625;41626;41627;41628;41629;41630;41631;41632;41633;41634;41635;41636 41622 561 30 DMLYPER Unmodified 922.42185 0.42185282 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.244 23.364 2 0.0020767 8130 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 118.69 115.29 5362400000 20392000 19097000 19323000 0 575880 546410 21474000 21183000 23079000 542050000 570880000 595240000 25016000 26409000 22921000 642850000 570630000 671070000 28951000 27081000 30250000 473330000 496470000 513570000 3593 1616 3495 68289;68290;68291;68292;68293;68294;68295;68296;68297;68298;68299;68300;68301;68302;68303;68304;68305;68306;68307;68308;68309;68310;68311 41637;41638;41639;41640;41641;41642;41643;41644;41645;41646;41647;41648;41649 41642 13 DMMIEILR Unmodified 1019.5144 0.514373 650 P0ABD3 bfr Bacterioferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.609 46.197 2 0.00051593 22978 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.66 117.1 202280000 32058000 31853000 27074000 0 0 0 18688000 19433000 14493000 0 0 0 10446000 8339400 7655400 0 0 0 9317500 12773000 10155000 0 0 0 3594 650 3496 68312;68313;68314;68315;68316;68317;68318;68319;68320;68321;68322;68323 41650;41651;41652;41653;41654;41655;41656;41657;41658;41659;41660;41661 41650 12 DMMLLDALIQLK Unmodified 1402.7564 0.75639418 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 55.822 54.347 2 0.00030058 26737 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.898 80.937 91303000 6259500 8056100 8131400 0 0 0 2854100 1619500 2388400 0 0 1392900 6940500 7445100 6670700 0 0 0 13261000 13020000 13264000 0 0 0 3595 150 3497 68324;68325;68326;68327;68328;68329;68330;68331;68332;68333;68334;68335;68336 41662 41662 1 DMSLYGLEDYTVVR Unmodified 1659.7814 0.78142296 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.615 51.326 2 4.9791E-08 25111 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 171.62 164.73 684700000 195710000 201070000 167290000 0 0 0 14251000 23263000 22878000 0 0 1466900 6672900 8611300 0 0 0 0 15817000 13869000 13798000 0 0 0 3596 1925 3498 68337;68338;68339;68340;68341;68342;68343;68344;68345;68346;68347;68348 41663;41664;41665;41666 41665 4 DMSVFSSLIR Unmodified 1153.5801 0.58014438 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 52.415 51.171 2 2.1209E-05 25400 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.99 127.03 120460000 10144000 9740600 10281000 0 0 0 10826000 10142000 10576000 0 0 0 6941300 7860200 8485700 0 0 0 12140000 12442000 10879000 0 0 0 3597 1794 3499 68349;68350;68351;68352;68353;68354;68355;68356;68357;68358;68359;68360;68361 41667;41668;41669;41670;41671;41672;41673;41674;41675;41676;41677;41678 41667 12 DMTAAELK Unmodified 877.42152 0.42151847 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 2 1 2 2 2 18.944 19.365 1;2 1.7501E-05 7555 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 179.21 138.36 2000600000 147730000 128580000 113880000 0 0 0 288500000 282080000 239860000 1297800 1017300 1672300 30621000 26181000 184660000 392510 0 0 271940000 33975000 248230000 0 0 0 3598 1189 3500 68362;68363;68364;68365;68366;68367;68368;68369;68370;68371;68372;68373;68374;68375;68376;68377;68378;68379;68380;68381;68382;68383;68384;68385;68386;68387 41679;41680;41681;41682;41683;41684;41685;41686;41687;41688;41689;41690 41682 10 DMTCQEFIDLNPK Oxidation (M) 1625.7065 0.70654346 885 P0AET2 hdeB Acid stress chaperone HdeB yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 3 4 5 3 5 2 2 2 1 1 2 39.417 37.675 2 3.1567E-17 17698 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 207.34 203.56 526370000 76429000 69828000 72706000 0 0 0 98487000 86467000 80395000 0 0 0 9127600 7365300 7778400 0 0 0 5211800 4503700 8074600 0 0 0 3599 885 3501 68388;68389;68390;68391;68392;68393;68394;68395;68396;68397;68398;68399;68400;68401;68402;68403;68404;68405;68406;68407;68408;68409;68410;68411;68412;68413;68414;68415;68416;68417;68418;68419;68420;68421 41691;41692;41693;41694;41695;41696;41697;41698;41699;41700;41701;41702;41703;41704;41705;41706;41707;41708;41709;41710;41711;41712;41713;41714;41715;41716 41705 405 21 DMTCQEFIDLNPK Unmodified 1609.7116 0.71162883 885 P0AET2 hdeB Acid stress chaperone HdeB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 42.485 40.695 2;3 2.1122E-12 19750 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 190.86 190.86 11951000000 2078500000 1841900000 1831100000 1948800 2224200 1621600 1706000000 1661200000 1633100000 1947900 2101200 1696800 233080000 233680000 250630000 0 0 0 158060000 162770000 149250000 0 0 0 3600 885 3501 68422;68423;68424;68425;68426;68427;68428;68429;68430;68431;68432;68433;68434;68435;68436;68437;68438;68439;68440;68441;68442;68443;68444;68445;68446;68447;68448;68449;68450;68451 41717;41718;41719;41720;41721;41722;41723;41724;41725;41726;41727;41728;41729;41730;41731;41732;41733;41734;41735;41736;41737 41730 21 DMTFSYAAVK Unmodified 1131.527 0.52704617 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.625 33.177 2 0.0022217 15888 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 80.165 76.755 714280000 56827000 52952000 49192000 0 0 0 48338000 51276000 52192000 0 0 0 53336000 48574000 48799000 0 0 0 77729000 90587000 84477000 0 0 0 3601 29 3502 68452;68453;68454;68455;68456;68457;68458;68459;68460;68461;68462;68463 41738;41739;41740;41741;41742 41740 4 DMVCSPGGTTIEAVR Unmodified 1591.7334 0.73342691 535 P0A9L8 proC Pyrroline-5-carboxylate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.701 29.345 2 8.0237E-15 13240 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 181.32 173.94 1480000000 238660000 233640000 214020000 0 0 0 102850000 94566000 94631000 0 0 0 96696000 79409000 75277000 0 0 0 75454000 90108000 84643000 0 0 0 3602 535 3503 68464;68465;68466;68467;68468;68469;68470;68471;68472;68473;68474;68475 41743;41744;41745;41746;41747;41748;41749;41750;41751;41752;41753;41754 41752 12 DMVIGPVR Unmodified 885.47422 0.47422274 307 P0A738 moaC Cyclic pyranopterin monophosphate synthase accessory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.665 27.417 2 0.0025068 12065 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 99.919 83.766 217750000 30822000 27538000 24131000 0 0 0 21555000 23401000 20403000 0 0 0 10991000 13566000 12196000 0 0 0 9949100 13429000 9771000 0 0 0 3603 307 3504 68476;68477;68478;68479;68480;68481;68482;68483;68484;68485;68486;68487 41755;41756;41757;41758;41759;41760;41761;41762;41763 41763 5 DMVKPEEMVVLDR Unmodified 1559.7687 0.76874978 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.39 33.835 2;3 1.6699E-07 16262 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 136.24 131.35 2387500000 290580000 259900000 244700000 0 0 0 179400000 182930000 161710000 0 0 0 133380000 155330000 131830000 0 0 0 206570000 216230000 224960000 0 0 0 3604 58 3505 68488;68489;68490;68491;68492;68493;68494;68495;68496;68497;68498;68499;68500;68501;68502;68503;68504;68505;68506;68507;68508;68509;68510;68511 41764;41765;41766;41767;41768;41769;41770;41771;41772;41773;41774;41775;41776;41777;41778;41779;41780;41781;41782;41783 41773 20 DNAAVMEGSEVGR Unmodified 1333.5932 0.59322826 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 19.904 20.478 2 3.6605E-31 7841 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 252.14 245.25 296600000 76402000 68285000 65772000 0 0 0 0 0 0 0 0 0 13668000 9791600 10231000 0 0 0 15561000 15826000 21065000 0 0 0 3605 1107 3506 68512;68513;68514;68515;68516;68517;68518;68519;68520 41784;41785;41786;41787;41788;41789;41790;41791 41789 8 DNALMLSLLEENK Unmodified 1488.7494 0.74939455 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.337 51.093 2 0.025079 25223 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 56.951 43.258 35205000 0 0 0 0 0 0 5548200 5963100 0 0 0 0 2875600 3247800 2900400 0 0 0 4705500 5340000 4624100 0 0 0 3606 1877 3507 68521;68522;68523;68524;68525;68526;68527;68528 41792 41792 0 DNDFAFDWQAYTPPVAHR Unmodified 2148.9654 0.96535241 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.818 49.455 3 4.8633E-05 19777 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 79.393 79.393 254750000 21096000 18864000 20403000 4724900 3908300 3733800 20615000 14851000 11817000 11220000 5958500 8431900 15522000 11795000 10642000 0 0 0 17352000 22238000 18145000 4676900 4543300 4212600 3607 1083 3508 68529;68530;68531;68532;68533;68534;68535;68536;68537;68538;68539;68540;68541;68542;68543;68544;68545;68546;68547;68548;68549 41793;41794;41795;41796;41797;41798;41799;41800;41801;41802;41803;41804 41794 12 DNDQTANLGALIDAGVR Unmodified 1741.8595 0.85949036 1815 P76104 ydcP Uncharacterized protease YdcP yes yes 0 0 0 By MS/MS By matching 1 1 48.567 47.363 2 0.000366 23230 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.115 56.807 6952600 4392400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2560200 0 0 0 3608 1815 3509 68550;68551 41805 41805 0 DNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPK Unmodified 4293.0673 0.067317467 1731 P69425 tatB Sec-independent protein translocase protein TatB yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 2 2 1 2 1 2 1 2 2 1 22.049 21.863 4;5 3.2228E-13 9087 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 101.04 99.788 235200000 13197000 0 0 0 0 1105100 26183000 19201000 24672000 6936100 5061100 7119600 11954000 21170000 13229000 0 0 0 30070000 35603000 19694000 0 0 0 3609 1731 3510 68552;68553;68554;68555;68556;68557;68558;68559;68560;68561;68562;68563;68564;68565;68566;68567;68568;68569;68570;68571;68572 41806;41807;41808;41809;41810;41811;41812;41813;41814 41809 9 DNEIVAK Unmodified 787.40758 0.40758296 984 P0AG44 rplQ 50S ribosomal protein L17 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.171 13.065 2 0.0019296 3508 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 121.29 88.822 1176700000 221580000 0 0 0 0 1572600 0 50882000 48627000 0 0 0 136580000 109990000 106460000 0 0 0 167860000 157610000 175530000 0 0 0 3610 984 3511 68573;68574;68575;68576;68577;68578;68579;68580;68581;68582 41815;41816;41817;41818;41819;41820 41819 5 DNEIYQFASIGEVNQDLK Unmodified 2081.9906 0.99056411 302 P0A722 lpxA Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 2 2 2 2 2 2 2 50.947 49.706 2;3 1.6645E-80 24178 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 318.49 315.54 322310000 38538000 13269000 31521000 0 0 0 9100100 24527000 29390000 0 0 0 25461000 25821000 23853000 0 0 0 37723000 33646000 29465000 0 0 0 3611 302 3512 68583;68584;68585;68586;68587;68588;68589;68590;68591;68592;68593;68594;68595;68596;68597;68598;68599;68600;68601;68602;68603;68604;68605 41821;41822;41823;41824;41825;41826;41827;41828;41829;41830;41831;41832 41822 12 DNESLSLSILR Unmodified 1245.6565 0.65648044 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 45.256 43.113 2 0.00025034 21468 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.048 91.325 46541000 0 0 0 0 0 0 17203000 17358000 0 3604100 2981100 3116400 0 0 0 0 0 0 0 0 0 2278000 0 0 3612 1183 3513 68606;68607;68608;68609;68610;68611;68612;68613 41833;41834;41835;41836;41837;41838 41835 4 DNEVDKILGLEIGADDYITKPFNPR Unmodified 2831.4341 0.43413865 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 53.34 51.919 3 0.03359 21153 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 46.862 40.286 24541000 0 0 0 5141900 5378000 5898800 0 0 0 3944100 4178100 0 0 0 0 0 0 0 0 0 0 0 0 0 3613 546 3514 68614;68615;68616;68617;68618 41839 41839 0 DNEVLGTMIGNFQGEGMPGK Unmodified 2092.9558 0.95577528 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.345 50.098 2 3.1712E-30 24662 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 219.95 218.25 145440000 17729000 23405000 16988000 0 0 0 16518000 14066000 14694000 0 0 0 8212400 9020500 10770000 0 0 0 4943400 5463300 3629500 0 0 0 3614 427 3515 68619;68620;68621;68622;68623;68624;68625;68626;68627;68628;68629;68630 41840;41841;41842;41843 41841 4 DNFKEELEK Unmodified 1150.5506 0.55061839 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 15.978 16.717 2;3 9.9489E-06 5744 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.59 145.34 222190000 67829000 83183000 62390000 0 0 0 2215300 3038900 1848200 0 0 0 970060 0 718900 0 0 0 0 0 0 0 0 0 3615 71 3516 68631;68632;68633;68634;68635;68636;68637;68638;68639;68640;68641 41844;41845;41846 41846 3 DNFKEELEKK Unmodified 1278.6456 0.6455814 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 2 2 13.27 14.01 2;3 9.8803E-05 4291 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 147.73 141.63 54536000 22827000 16942000 14767000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3616 71 3517 68642;68643;68644;68645;68646;68647 41847;41848;41849;41850;41851;41852 41847 6 DNFVWVDR Unmodified 1049.493 0.49304393 1536 P39401 mdoB Phosphoglycerol transferase I yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.633 35.745 2 0.031553 17739 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 63.673 57.223 65336000 5136000 0 3000700 0 0 0 6701400 8425900 8482600 1049700 1310900 1346700 3267900 3151200 4635200 0 0 0 5588000 6673400 6566600 0 0 0 3617 1536 3518 68648;68649;68650;68651;68652;68653;68654;68655;68656;68657;68658;68659;68660;68661 41853;41854 41853 2 DNFYGVQFHPER Unmodified 1507.6844 0.68442653 1624 P60595 hisH Imidazole glycerol phosphate synthase subunit HisH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 30.907 29.551 2;3 1.2903E-11 13710 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 183.33 179.32 349530000 43142000 49174000 36335000 0 0 0 26150000 24366000 24032000 0 0 0 21098000 22188000 21362000 0 0 0 26288000 29475000 25926000 0 0 0 3618 1624 3519 68662;68663;68664;68665;68666;68667;68668;68669;68670;68671;68672;68673;68674;68675;68676;68677;68678;68679;68680;68681;68682;68683;68684;68685 41855;41856;41857;41858;41859;41860;41861;41862 41862 8 DNGIYCMVAGEPIVDHIR Unmodified 2057.9663 0.96628039 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 45.002 43.239 3 5.2091E-05 21382 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 78.661 74.941 128660000 0 0 0 0 0 0 20639000 12434000 15174000 1840200 2088900 2033300 14119000 12397000 10241000 0 0 0 12131000 14799000 9033600 0 0 1730500 3619 1739 3520 68686;68687;68688;68689;68690;68691;68692;68693;68694;68695;68696;68697;68698 41863;41864;41865;41866;41867;41868;41869 41865 7 DNIALGR Unmodified 757.40825 0.40825167 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.698 17.22 2 0.0020465 6082 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 119.22 88.553 285330000 13418000 13145000 17277000 0 0 0 34073000 25430000 0 3690400 0 0 26901000 23543000 21224000 1086800 944720 992790 32134000 32828000 36998000 0 1648400 0 3620 1854 3521 68699;68700;68701;68702;68703;68704;68705;68706;68707;68708;68709;68710;68711;68712;68713;68714;68715 41870;41871;41872;41873;41874;41875;41876;41877 41874 8 DNIGKPMATLFVEYK Unmodified 1724.8807 0.88074307 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 41.663 39.693 3 4.3337E-05 16204 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 85.469 84.962 79095000 3048700 0 0 3092200 2498300 2689800 6086700 6516600 0 7978500 6984800 5663800 0 0 5264700 0 0 0 12814000 13396000 0 3060500 0 0 3621 997 3522 68716;68717;68718;68719;68720;68721;68722;68723;68724;68725;68726;68727;68728 41878;41879;41880;41881;41882;41883 41878 6 DNISLDLGNNAEAVILR Unmodified 1825.9534 0.95339074 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 2 2 7 5 6 1 1 2 5 2 5 52.113 51.273 2;3 4.6497E-65 20035 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 281.25 264.03 2277000000 10179000 0 3021400 0 0 727090 23583000 0 19797000 141000000 109620000 127510000 0 0 0 367290000 261330000 283810000 46352000 52879000 11555000 278870000 267650000 271870000 3622 935 3523 68729;68730;68731;68732;68733;68734;68735;68736;68737;68738;68739;68740;68741;68742;68743;68744;68745;68746;68747;68748;68749;68750;68751;68752;68753;68754;68755;68756;68757;68758;68759;68760;68761;68762;68763;68764;68765;68766;68767;68768;68769;68770;68771;68772;68773;68774 41884;41885;41886;41887;41888;41889;41890;41891;41892;41893;41894;41895;41896;41897;41898;41899;41900;41901;41902;41903;41904;41905;41906;41907;41908;41909;41910;41911;41912;41913;41914;41915;41916 41887 30 DNISLDLGNNAEAVILREDMLPR Unmodified 2567.3014 0.30135034 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 3 4 4 4 3 4 4 53.675 52.764 2;3;4 3.3554E-75 20791 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 338.8 327.53 5096500000 0 0 0 0 0 0 0 0 4575900 382650000 388860000 366890000 0 0 0 371970000 438000000 471790000 0 0 0 1008300000 860560000 802840000 3623 935 3524 68775;68776;68777;68778;68779;68780;68781;68782;68783;68784;68785;68786;68787;68788;68789;68790;68791;68792;68793;68794;68795;68796;68797;68798;68799;68800;68801;68802;68803;68804;68805;68806;68807;68808 41917;41918;41919;41920;41921;41922;41923;41924;41925;41926;41927;41928;41929;41930;41931;41932;41933;41934;41935;41936;41937;41938;41939 41937 23 DNISLDLGNNAEAVILREDMLPR Oxidation (M) 2583.2963 0.29626496 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.233 49.985 3 4.8965E-07 19771 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 107.39 104.78 78844000 0 0 0 0 0 0 0 0 0 6673600 6111300 5926100 0 0 0 0 5662200 0 0 0 0 21491000 15695000 17285000 3624 935 3524 68809;68810;68811;68812;68813;68814;68815 41940;41941;41942;41943;41944;41945 41943 419 6 DNKLQMELVPER Oxidation (M) 1486.745 0.74497787 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 5 6 7 7 7 5 6 25.72 24.768 2;3 9.0033E-07 9412 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 113.69 107.15 334220000 0 0 0 0 0 0 0 0 0 25973000 29830000 24230000 0 0 0 61693000 55323000 50103000 0 0 0 32696000 21063000 33309000 3625 463 3525 68816;68817;68818;68819;68820;68821;68822;68823;68824;68825;68826;68827;68828;68829;68830;68831;68832;68833;68834;68835;68836;68837;68838;68839;68840;68841;68842;68843;68844;68845;68846;68847;68848;68849;68850;68851;68852;68853;68854;68855;68856;68857;68858;68859;68860;68861;68862;68863;68864;68865;68866;68867;68868;68869;68870 41946;41947;41948;41949;41950;41951;41952;41953;41954;41955;41956;41957;41958;41959;41960;41961;41962;41963;41964;41965;41966;41967;41968;41969;41970;41971;41972;41973;41974;41975;41976;41977;41978;41979;41980;41981;41982;41983;41984;41985 41961 257 40 DNKLQMELVPER Unmodified 1470.7501 0.75006325 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 1 3 3 4 1 1 1 30.26 29.235 2;3 1.425E-11 9776 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 190.46 184.92 6125100000 7441000 7213400 5858000 2525500 6041200 6620400 0 0 0 140330000 149620000 131210000 0 0 0 933640000 383980000 3480900000 0 0 0 276070000 282460000 311150000 3626 463 3525 68871;68872;68873;68874;68875;68876;68877;68878;68879;68880;68881;68882;68883;68884;68885;68886;68887;68888;68889;68890;68891;68892;68893;68894;68895 41986;41987;41988;41989;41990;41991;41992;41993;41994;41995;41996;41997 41986 11 DNLAAANPQVVK Unmodified 1238.6619 0.66190017 1897 P77318 ydeN Uncharacterized sulfatase YdeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.096 21.485 2 1.2807E-05 8550 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.94 115.71 235990000 73966000 71318000 59864000 0 0 0 0 3652500 5263700 0 0 0 2758200 3470600 4133600 0 0 0 3447100 4362100 3757200 0 0 0 3627 1897 3526 68896;68897;68898;68899;68900;68901;68902;68903;68904;68905;68906 41998;41999;42000;42001 41999 4 DNLAEFSK Unmodified 922.43961 0.43961137 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 21.399 21.619 1 0.0093962 8839 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.21 82.531 22869000 9471400 6277300 7120900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3628 852 3527 68907;68908;68909 42002;42003 42002 0 DNLAPDLSYR Unmodified 1162.5619 0.56185177 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.824 29.379 2 1.6026E-06 14041 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.15 129.6 1057700000 15005000 15709000 14627000 0 0 837770 168540000 164140000 126840000 25263000 25680000 24201000 105870000 99258000 91145000 4515000 0 4382600 52126000 47633000 59282000 5063300 3612300 3938600 3629 700 3528 68910;68911;68912;68913;68914;68915;68916;68917;68918;68919;68920;68921;68922;68923;68924;68925;68926;68927;68928;68929;68930 42004;42005;42006;42007;42008;42009;42010;42011;42012;42013;42014 42007 9 DNLTGSEQIFYSGFK Unmodified 1704.7995 0.79951586 683 P0ABU9 tolQ Protein TolQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.664 45.002 2 1.5336E-07 17931 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 134.18 127.65 119230000 0 0 0 2026700 2104000 1920800 9432400 8825900 9405100 4474000 5342100 4600200 8757200 7877700 7790700 0 0 0 12539000 14252000 12872000 0 4308000 2698700 3630 683 3529 68931;68932;68933;68934;68935;68936;68937;68938;68939;68940;68941;68942;68943;68944;68945;68946;68947 42015;42016;42017 42016 0 DNLTYIADK Unmodified 1051.5186 0.51858998 1205 P23256 malY Protein MalY;Cystathionine beta-lyase MalY;Maltose regulon modulator yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.346 23.45 2 0.002234 10409 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 85.862 78.191 111470000 10194000 9506800 8297500 0 0 0 10911000 11900000 9179600 0 0 0 10409000 7263200 8229900 0 0 0 8314700 7730600 9530700 0 0 0 3631 1205 3530 68948;68949;68950;68951;68952;68953;68954;68955;68956;68957;68958;68959 42018;42019;42020 42018 3 DNMAFSPEER Unmodified 1194.4975 0.49753696 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 24.145 23.184 2 1.2628E-05 10160 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.86 143.27 641250000 40827000 40343000 31742000 3212600 2635200 2941800 51504000 41542000 49796000 41266000 32455000 36373000 0 0 0 25713000 15328000 18017000 52749000 50310000 39853000 19798000 21980000 22860000 3632 1057 3531 68960;68961;68962;68963;68964;68965;68966;68967;68968;68969;68970;68971;68972;68973;68974;68975;68976;68977;68978;68979;68980;68981 42021;42022;42023;42024;42025;42026;42027;42028;42029;42030;42031;42032;42033;42034;42035;42036;42037;42038;42039;42040;42041 42033 21 DNMDELKK Unmodified 991.46445 0.46444592 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.92 12.63 2 1.4709E-05 3281 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 178.65 164.98 1637800000 209480000 164760000 155510000 0 0 0 111160000 114230000 122970000 0 0 0 111070000 98961000 88206000 1629100 1843600 0 164730000 143630000 149610000 0 0 0 3633 834 3532 68982;68983;68984;68985;68986;68987;68988;68989;68990;68991;68992;68993;68994;68995 42042;42043;42044;42045;42046;42047;42048;42049;42050;42051;42052;42053;42054 42054 13 DNPEMER Unmodified 889.35998 0.35998084 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 11.399 12.2 2 0.0028071 3149 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.61 104.86 113470000 37198000 35568000 24852000 0 0 0 4042100 0 0 0 0 0 0 3949600 0 0 0 0 0 3717900 4137200 0 0 0 3634 1107 3533 68996;68997;68998;68999;69000;69001;69002 42055;42056;42057 42057 3 DNPETAK Unmodified 773.35555 0.35554739 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.796 5.6841 2 0.020298 1078 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 76.847 55.862 577150000 0 0 0 0 0 0 81458000 70855000 66463000 0 0 0 48240000 48727000 43988000 0 0 0 74534000 74215000 68664000 0 0 0 3635 343 3534 69003;69004;69005;69006;69007;69008;69009;69010;69011 42058;42059;42060 42060 3 DNPETAKEIEK Unmodified 1272.6198 0.61976058 343 P0A7G6 recA Protein RecA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 2 1 1 3 2 1 2 1 1 1 11.718 12.175 2;3 0.00011948 2626 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 125.74 99.322 40252000 0 0 0 1405400 3612700 1281000 0 0 0 0 13819000 7655200 0 0 0 0 1743300 4346800 0 0 0 3933900 2454900 0 3636 343 3535 69012;69013;69014;69015;69016;69017;69018;69019;69020;69021;69022;69023;69024;69025;69026;69027 42061;42062;42063;42064;42065;42066;42067 42064 6 DNPETAKEIEKK Unmodified 1400.7147 0.7147236 343 P0A7G6 recA Protein RecA yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 11.207 11.228 3 6.5739E-07 2272 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 98.407 91.36 20429000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3543800 6398100 4833100 0 0 0 0 5654300 0 3637 343 3536 69028;69029;69030;69031;69032;69033 42068;42069;42070 42068 3 DNPLVIR Unmodified 825.47085 0.47085192 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 25.666 24.659 2 0.0020465 11072 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 119.22 87.108 106190000 0 12960000 0 0 0 0 0 15217000 0 0 0 0 10652000 12020000 10198000 0 0 0 14211000 16074000 14859000 0 0 0 3638 35 3537 69034;69035;69036;69037;69038;69039;69040;69041;69042 42071;42072;42073;42074;42075;42076;42077;42078 42072 8 DNPPQDLIDLNPNQSVPTLVDR Unmodified 2459.2292 0.22923125 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 52.179 50.999 2;3 3.2071E-43 23859 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 236.67 218.66 800260000 74805000 64509000 65446000 0 0 0 0 0 0 0 0 0 97636000 109030000 112050000 0 0 0 85093000 96671000 95018000 0 0 0 3639 712 3538 69043;69044;69045;69046;69047;69048;69049;69050;69051;69052;69053;69054;69055;69056;69057;69058;69059;69060 42079;42080;42081;42082;42083;42084;42085;42086;42087;42088;42089;42090;42091;42092;42093;42094;42095 42095 17 DNPTALFHQLCGDRPATLLLESADIDSK Unmodified 3096.5186 0.51861334 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 51.11 49.871 4 8.2486E-11 24391 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.15 107.12 95285000 39707000 29322000 26256000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3640 46 3539 69061;69062;69063 42096 42096 1 DNPTALFHQLCGDRPATLLLESADIDSKDDLK Unmodified 3567.7515 0.7515264 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 2 By matching By MS/MS By matching 1 1 1 49.729 48.39 4 3.1313E-18 23711 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.8 134.87 101340000 30337000 34874000 36134000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3641 46 3540 69064;69065;69066 42097 42097 1 DNPVLIMGDMNISPTDLDIGIGEENR Unmodified 2827.3368 0.33680915 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.442 53.984 3 1.1239E-05 25806 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 82.849 82.842 77598000 9822700 7228700 6558400 0 0 0 5090300 0 5450500 0 0 0 9287700 5659900 5066300 0 0 0 9717900 7722100 5994000 0 0 0 3642 197 3541 69067;69068;69069;69070;69071;69072;69073;69074;69075;69076;69077 42098;42099 42099 0 DNQDGFQQLFSELGIANR Unmodified 2050.9708 0.97083172 892 P0AEW9 fruK 1-phosphofructokinase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.57 54.097 2 1.3208E-67 25630 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 311.54 308.32 237750000 17326000 13829000 18433000 0 0 0 12686000 12174000 13407000 0 0 0 20546000 23759000 24014000 0 0 0 25019000 27418000 29140000 0 0 0 3643 892 3542 69078;69079;69080;69081;69082;69083;69084;69085;69086;69087;69088;69089 42100;42101;42102;42103;42104 42104 5 DNQELESLNIEVSVAGR Unmodified 1871.9225 0.92248455 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 1 1 1 1 1 47.52 45.969 2 4.5305E-14 22808 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 205.72 200.23 56107000 0 0 0 0 0 0 14785000 17068000 7350300 0 0 0 0 4864700 4184000 0 0 0 4492200 0 3363500 0 0 0 3644 449 3543 69090;69091;69092;69093;69094;69095;69096;69097;69098 42105;42106;42107 42106 3 DNQIVTLTASR Unmodified 1216.6412 0.64116473 778 P0ADA5 yajG Uncharacterized lipoprotein YajG yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 28.226 27.018 2 0.14203 12014 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 39.918 27.291 167060000 0 0 0 3925300 3672500 4411700 0 0 0 0 0 0 17546000 12389000 16135000 0 0 0 34321000 38063000 36591000 0 0 0 3645 778 3544 69099;69100;69101;69102;69103;69104;69105;69106;69107 42108 42108 0 DNSAGLDLANEHR Unmodified 1410.6488 0.6487693 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 18.195 18.574 2;3 2.2763E-17 6931 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 208.84 198.61 1256100000 38454000 37610000 35857000 33044000 32330000 29637000 47871000 48155000 47270000 37644000 35535000 41548000 41237000 41542000 34514000 7181600 10589000 11839000 153770000 150890000 147580000 68428000 62832000 60707000 3646 215 3545 69108;69109;69110;69111;69112;69113;69114;69115;69116;69117;69118;69119;69120;69121;69122;69123;69124;69125;69126;69127;69128;69129;69130;69131;69132;69133;69134;69135;69136;69137;69138;69139;69140;69141;69142;69143;69144;69145;69146;69147;69148;69149;69150;69151;69152;69153 42109;42110;42111;42112;42113;42114;42115;42116;42117;42118;42119;42120;42121;42122;42123;42124;42125;42126;42127;42128;42129;42130;42131;42132;42133;42134;42135;42136;42137;42138;42139;42140;42141;42142;42143;42144;42145;42146;42147;42148;42149;42150;42151;42152 42134 37 DNSGHTGVGEIPGGEK Unmodified 1552.7118 0.71176349 881 P0AES2 gudD Glucarate dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 1 1 2 2 2 14.669 15.419 2;3 1.6077E-13 5196 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.86 163.36 167190000 24287000 20429000 16829000 0 0 0 22084000 17613000 18321000 0 0 0 7718200 3597600 2624500 0 0 0 12903000 10466000 10315000 0 0 0 3647 881 3546 69154;69155;69156;69157;69158;69159;69160;69161;69162;69163;69164;69165;69166;69167;69168;69169;69170;69171;69172;69173;69174;69175 42153;42154;42155;42156;42157 42155 5 DNTPMFVK Unmodified 950.45315 0.45315295 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 25.348 24.249 1;2 0.0034989 10964 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 91.626 91.626 37020000000 2459400000 2439900000 2188600000 5376800 4664700 4960000 3889000000 4101200000 3651800000 0 4327000 5824700 2841100000 3084000000 2569500000 0 0 0 3269900000 3363500000 3124100000 4494100 4758200 3844300 3648 504 3547 69176;69177;69178;69179;69180;69181;69182;69183;69184;69185;69186;69187;69188;69189;69190;69191;69192;69193;69194;69195;69196;69197;69198;69199;69200;69201;69202;69203;69204;69205;69206;69207;69208 42158;42159;42160;42161;42162;42163;42164;42165;42166;42167;42168;42169;42170;42171;42172;42173;42174;42175;42176 42167 19 DNTPMFVK Oxidation (M) 966.44807 0.44806757 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 6 5 6 1 4 5 7 5 5 4 21.537 21.488 2 0.0022662 8025 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 104.45 91.958 1601200000 100830000 96746000 94729000 0 0 0 123480000 282060000 116310000 533630 0 0 116740000 118040000 51659000 0 0 0 174220000 171660000 154170000 0 0 0 3649 504 3547 69209;69210;69211;69212;69213;69214;69215;69216;69217;69218;69219;69220;69221;69222;69223;69224;69225;69226;69227;69228;69229;69230;69231;69232;69233;69234;69235;69236;69237;69238;69239;69240;69241;69242;69243;69244;69245;69246;69247;69248;69249;69250;69251;69252;69253;69254;69255;69256;69257;69258;69259;69260;69261;69262;69263;69264;69265;69266;69267;69268 42177;42178;42179;42180;42181;42182;42183;42184;42185;42186;42187;42188;42189;42190;42191;42192;42193;42194;42195;42196;42197;42198;42199;42200;42201;42202;42203;42204 42178 307 28 DNTWYTGAK Unmodified 1054.472 0.47197413 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.306 22.042 2 7.9119E-05 6606 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 141.52 124.28 741280000 18312000 13098000 15941000 21263000 22509000 21177000 20415000 22571000 17536000 67114000 47337000 60445000 32541000 32842000 29701000 28004000 24259000 24414000 35248000 34814000 35482000 44531000 35387000 36340000 3650 480 3548 69269;69270;69271;69272;69273;69274;69275;69276;69277;69278;69279;69280;69281;69282;69283;69284;69285;69286;69287;69288;69289;69290;69291;69292 42205;42206;42207;42208;42209;42210;42211;42212;42213;42214;42215;42216;42217;42218;42219;42220;42221;42222 42205 13 DNVTDKNELR Unmodified 1202.5891 0.58912916 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 2 2 1 2 2 2 11.598 12.434 2;3 6.5302E-17 3289 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 238.51 233.15 1402100000 147250000 121950000 110760000 0 0 345250 309700000 273760000 292820000 0 0 0 22921000 21210000 7808000 0 0 0 29867000 33108000 30601000 0 0 0 3651 1191 3549 69293;69294;69295;69296;69297;69298;69299;69300;69301;69302;69303;69304;69305;69306;69307;69308;69309;69310;69311;69312;69313;69314;69315;69316 42223;42224;42225;42226;42227;42228;42229;42230 42227 8 DNVVFSCGVHPLNQNDPYDVEDLRR Unmodified 2957.3726 0.3726178 960 P0AFQ7 ycfH Uncharacterized deoxyribonuclease YcfH yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 2 2 1 38.167 36.622 3;4 8.4486E-07 17643 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.957 96.076 313260000 30824000 49480000 37239000 0 0 0 0 0 12150000 0 0 0 24689000 30812000 22338000 0 0 0 39357000 37003000 29368000 0 0 0 3652 960 3550 69317;69318;69319;69320;69321;69322;69323;69324;69325;69326;69327;69328;69329;69330;69331;69332;69333;69334 42231;42232;42233;42234 42233 4 DNVVIYEGELESLR Unmodified 1634.8152 0.81516593 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 46.732 45.086 2 1.6725E-06 21950 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.48 145.77 300570000 92618000 83114000 69452000 0 0 0 0 28572000 25027000 1783700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3653 297 3551 69335;69336;69337;69338;69339;69340 42235;42236;42237;42238 42238 1 DNVVIYEGELESLRR Unmodified 1790.9163 0.91627696 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 1 1 1 39.181 37.547 2;3 6.0082E-12 15180 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 139.58 123.18 596920000 67094000 66960000 65892000 0 0 0 21370000 18960000 22828000 37678000 26916000 5976100 29031000 27813000 27602000 32529000 27452000 32449000 27051000 27989000 25505000 1577700 2240900 2006100 3654 297 3552 69341;69342;69343;69344;69345;69346;69347;69348;69349;69350;69351;69352;69353;69354;69355;69356;69357;69358;69359;69360;69361;69362;69363;69364;69365;69366;69367;69368;69369;69370;69371;69372;69373;69374;69375;69376 42239;42240;42241;42242;42243;42244;42245;42246 42243 8 DPADGRK Unmodified 757.37187 0.37186616 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 1 By MS/MS 1 5.9635 6.7158 2 0.061786 1125 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.344 63.491 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3655 63 3553 69377 42247 42247 1 DPALSELYLVEGDSAGGSAK Unmodified 1977.9531 0.95311597 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 48.339 46.719 2 9.0091E-18 22822 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.89 151.17 32999000 0 0 0 0 0 0 11373000 0 8162400 0 0 0 0 0 0 0 0 0 13464000 0 0 0 0 0 3656 883 3554 69378;69379;69380 42248 42248 1 DPASVAAAIK Unmodified 941.5182 0.51819605 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.077 23.18 2 9.9131E-05 10335 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 130.56 118.84 354570000 33407000 28922000 23736000 0 0 0 40400000 31294000 35321000 0 0 0 28731000 27405000 25360000 0 0 0 22855000 26358000 30784000 0 0 0 3657 1471 3555 69381;69382;69383;69384;69385;69386;69387;69388;69389;69390;69391;69392 42249;42250;42251;42252;42253 42250 5 DPATGQAHTAHTNLPVPLIYVGDK Unmodified 2514.2867 0.28668655 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 37.174 35.5 3;4 2.4524E-15 17496 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.39 145.47 1087500000 61100000 52605000 48366000 0 0 0 123340000 120100000 125350000 0 0 0 95508000 89696000 91568000 0 0 0 85529000 99826000 94462000 0 0 0 3658 1487 3556 69393;69394;69395;69396;69397;69398;69399;69400;69401;69402;69403;69404;69405;69406;69407;69408;69409;69410;69411;69412;69413;69414;69415;69416 42254;42255;42256;42257;42258;42259;42260;42261;42262;42263;42264;42265;42266;42267;42268;42269;42270;42271;42272 42257 19 DPATLDYVVPFK Unmodified 1363.7024 0.702368 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.497 47.068 2 9.8296E-12 22767 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 188.04 176.89 198650000 0 35437000 2328900 0 0 0 46750000 45152000 43416000 0 0 0 0 0 0 0 0 0 0 0 25566000 0 0 0 3659 277 3557 69417;69418;69419;69420;69421;69422 42273;42274;42275;42276;42277 42276 4 DPAVFLFDEPLSNLDAK Unmodified 1889.9411 0.94109472 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 1 1 2 1 2 2 1 46.42 44.826 2;3 9.9117E-19 26423 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 229.97 218.75 391910000 5161400 9987100 9121900 0 0 0 14871000 13131000 11049000 0 0 0 4210400 41096000 34697000 0 0 0 91454000 75941000 80586000 0 0 602260 3660 1064 3558 69423;69424;69425;69426;69427;69428;69429;69430;69431;69432;69433;69434;69435;69436;69437;69438;69439;69440 42278;42279;42280;42281;42282;42283 42280 6 DPDFYAFIR Unmodified 1142.5397 0.53965977 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.634 49.218 2 8.0962E-08 24360 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 187.34 180.12 367120000 12375000 15041000 15523000 0 0 0 37792000 34692000 33987000 6958300 6077100 7204700 25302000 22598000 22468000 0 0 0 45482000 42743000 38879000 0 0 0 3661 648 3559 69441;69442;69443;69444;69445;69446;69447;69448;69449;69450;69451;69452;69453;69454;69455 42284;42285;42286;42287;42288;42289;42290;42291;42292;42293;42294;42295 42287 8 DPDIYAIGDCASCPRPEGGFVPPR Unmodified 2645.2003 0.20025609 27 P00393 ndh NADH dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.355 38.551 3 2.7211E-22 19045 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 173.09 172.11 255670000 9819600 10457000 7920500 2067800 3210900 2050000 0 35354000 0 15860000 13412000 11907000 21853000 25060000 14454000 0 0 0 26161000 25409000 23679000 0 6996000 0 3662 27 3560 69456;69457;69458;69459;69460;69461;69462;69463;69464;69465;69466;69467;69468;69469;69470;69471;69472 42296;42297;42298;42299;42300;42301;42302;42303;42304;42305;42306;42307;42308;42309;42310 42300 13 DPDVVLLADK Unmodified 1083.5812 0.58119023 1624 P60595 hisH Imidazole glycerol phosphate synthase subunit HisH yes yes 0 0 0 By MS/MS 1 36.309 34.204 2 0.086034 16888 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 45.598 42.919 6496500 0 0 0 0 0 0 6496500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3663 1624 3561 69473 42311 42311 0 DPEASENDKYVALQFLR Unmodified 1993.9745 0.97452012 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.651 40.953 3 1.4152E-06 20110 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.197 94.686 224080000 37558000 29411000 28710000 0 0 0 9423600 9581900 8273000 0 0 0 14052000 11502000 13592000 0 0 0 21399000 19806000 20770000 0 0 0 3664 696 3562 69474;69475;69476;69477;69478;69479;69480;69481;69482;69483;69484;69485 42312;42313;42314;42315;42316;42317;42318;42319 42315 5 DPEEVVGIGANLPTDK Unmodified 1652.8257 0.82573061 1438 P36562 cobT Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.665 37.992 2 0.00043928 18385 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 69.229 65.556 56518000 5376700 5602700 4816900 0 0 0 4511600 6091500 5748400 0 0 0 4388000 4089000 2181300 0 0 0 4730700 4210200 4770500 0 0 0 3665 1438 3563 69486;69487;69488;69489;69490;69491;69492;69493;69494;69495;69496;69497 42320 42320 0 DPEFQAQFNDLLK Unmodified 1563.7569 0.75692277 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 49.972 48.583 2 3.2989E-12 23653 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 183.99 166.96 465680000 116630000 95335000 98579000 0 0 0 23772000 19116000 0 0 0 0 17575000 14599000 13145000 0 0 0 22853000 23888000 20188000 0 0 0 3666 405 3564 69498;69499;69500;69501;69502;69503;69504;69505;69506;69507;69508 42321;42322;42323;42324;42325;42326;42327;42328;42329;42330 42324 10 DPEFQNIMK Unmodified 1120.5223 0.52229515 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 32.597 31.296 2 0.0019765 14296 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 94.302 87.478 153980000 16220000 14004000 16456000 0 0 0 12846000 0 0 0 0 0 12872000 14389000 12154000 0 0 0 17805000 19777000 17455000 0 0 0 3667 1221 3565 69509;69510;69511;69512;69513;69514;69515;69516;69517;69518 42331;42332;42333;42334;42335;42336;42337;42338;42339;42340 42338 0 DPEITITTWEEWNSNRK Unmodified 2118.0018 0.0017974991 1675 P64479 ydiZ Uncharacterized protein YdiZ yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 44.523 42.929 3 0.058256 21294 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 38.01 34.949 30373000 5508100 0 6539200 0 0 0 7344400 0 8658200 0 0 0 2322900 0 0 0 0 0 0 0 0 0 0 0 3668 1675 3566 69519;69520;69521;69522;69523 42341;42342 42341 0 DPETTAQWIER Unmodified 1344.631 0.63099397 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 2 31.811 30.448 2 8.6135E-20 14473 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 236.32 189.85 786150000 97969000 100230000 94989000 0 498420 0 82294000 77818000 75734000 0 0 0 45435000 35557000 31321000 0 0 0 50241000 43197000 50868000 0 0 0 3669 1341 3567 69524;69525;69526;69527;69528;69529;69530;69531;69532;69533;69534;69535;69536;69537;69538 42343;42344;42345;42346;42347;42348;42349;42350;42351;42352 42344 9 DPFDWAEK Unmodified 1006.4396 0.43961137 1881 P77148 ydhS Uncharacterized protein YdhS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 38.353 36.592 2 0.0018828 17860 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.14 98.681 51159000 11869000 13064000 10309000 0 0 0 2702900 3572100 4450800 0 0 0 0 0 0 0 0 0 3054700 0 2136000 0 0 0 3670 1881 3568 69539;69540;69541;69542;69543;69544;69545;69546 42353;42354;42355 42353 3 DPFFEAK Unmodified 852.40177 0.4017693 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.567 27.319 2 0.11672 12660 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.709 45.21 194060000 11543000 10630000 10490000 0 0 0 17093000 19875000 18129000 0 0 0 17338000 14746000 11827000 0 0 0 18528000 24764000 19102000 0 0 0 3671 1306 3569 69547;69548;69549;69550;69551;69552;69553;69554;69555;69556;69557;69558 42356;42357;42358 42356 0 DPFGAASGGR Unmodified 933.43044 0.43044367 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.629 18.14 2 1.1292E-06 6298 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 168.27 153.85 2255300000 127660000 124070000 96638000 1193000 1172600 0 229800000 261010000 205300000 1106600 950230 923770 243820000 208020000 214100000 0 0 0 165460000 177760000 195010000 0 758100 486470 3672 299 3570 69559;69560;69561;69562;69563;69564;69565;69566;69567;69568;69569;69570;69571;69572;69573;69574;69575;69576;69577 42359;42360;42361;42362;42363;42364;42365;42366;42367;42368;42369;42370 42370 12 DPFTLTEHDGK Unmodified 1258.583 0.58298115 1229 P23908 argE Acetylornithine deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.364 21.823 2;3 1.9889E-07 9505 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.07 161.13 372330000 53658000 45832000 47651000 0 0 0 41677000 28139000 30529000 0 0 0 17267000 20077000 17734000 0 0 0 24050000 22459000 23262000 0 0 0 3673 1229 3571 69578;69579;69580;69581;69582;69583;69584;69585;69586;69587;69588;69589;69590;69591;69592;69593;69594;69595;69596;69597;69598;69599;69600;69601 42371;42372;42373;42374;42375;42376;42377;42378;42379 42371 8 DPGDSAEMMQAR Unmodified 1306.5282 0.52818516 1453 P36999 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 20.224 20.716 2 0.0013744 8178 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 66.595 65.767 45417000 6729200 6697200 5594100 0 0 0 0 0 5027300 0 0 0 3730100 3095900 3005600 0 0 0 3921100 4467400 3149400 0 0 0 3674 1453 3572 69602;69603;69604;69605;69606;69607;69608;69609;69610;69611 42380 42380 0 DPHGNIECVQTLDMMPENFSDTR Unmodified 2705.152 0.15198526 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 43.864 42.525 2 3.4408E-35 20715 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 212.37 206.34 26603000 6133300 11119000 9351100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3675 1610 3573 69612;69613;69614 42381 42381 1 DPIQPYIDGEWVK Unmodified 1558.7668 0.76675917 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 2 2 2 46.616 45.182 2;3 8.4368E-07 22410 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.71 136.53 1952700000 239550000 215590000 188170000 0 0 0 212390000 192860000 182460000 0 0 0 114370000 114500000 100310000 0 0 0 122310000 140510000 129640000 0 0 0 3676 1109 3574 69615;69616;69617;69618;69619;69620;69621;69622;69623;69624;69625;69626;69627;69628;69629;69630;69631;69632;69633;69634;69635;69636 42382;42383;42384;42385;42386;42387;42388;42389;42390;42391 42382 9 DPISQAAFALPLPAK Unmodified 1537.8504 0.85042922 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.502 51.254 2 2.1433E-12 23965 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 178.71 176.77 149880000 7885800 7932200 8158900 0 0 0 13258000 11090000 13084000 0 0 0 9651000 12770000 12204000 0 0 0 18092000 16564000 19189000 0 0 0 3677 819 3575 69637;69638;69639;69640;69641;69642;69643;69644;69645;69646;69647;69648 42392;42393;42394;42395;42396;42397;42398;42399 42399 6 DPLDNTYTR Unmodified 1093.504 0.50400254 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.891 21.231 2 7.4741E-06 8602 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 170.24 162.67 6206100000 1897400000 1647300000 1469500000 0 0 0 161120000 151870000 153530000 0 0 0 111000000 119770000 108360000 0 0 0 133170000 134610000 118450000 0 0 0 3678 1217 3576 69649;69650;69651;69652;69653;69654;69655;69656;69657;69658;69659;69660 42400;42401;42402;42403;42404;42405 42400 4 DPLESLR Unmodified 828.43413 0.43413207 711 P0ACA1 yibF Uncharacterized GST-like protein YibF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 25.752 24.828 2 0.019413 11122 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.741 68.393 217940000 32584000 36562000 29433000 0 0 0 0 0 0 0 0 0 15271000 14014000 12290000 0 0 0 27620000 26071000 24095000 0 0 0 3679 711 3577 69661;69662;69663;69664;69665;69666;69667;69668;69669 42406;42407;42408;42409;42410;42411 42407 3 DPLVPEENDK Unmodified 1154.5455 0.54553301 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.403 20.619 2 1.4356E-06 8038 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.96 162.12 650680000 49279000 40993000 45817000 0 0 0 41674000 37248000 35671000 18299000 0 0 44264000 37699000 36227000 22306000 11174000 19150000 58381000 60445000 52974000 14122000 12053000 12905000 3680 384 3578 69670;69671;69672;69673;69674;69675;69676;69677;69678;69679;69680;69681;69682;69683;69684;69685;69686;69687;69688 42412;42413;42414;42415;42416;42417;42418;42419;42420;42421;42422;42423;42424;42425;42426;42427;42428;42429;42430 42426 19 DPLVPEENDKTTVIALR Unmodified 1909.0157 0.015656649 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 35.695 34.159 2;3 5.4991E-19 15797 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 184.31 180.26 3874400000 90864000 76193000 68034000 0 0 575710 57919000 49523000 45652000 207630000 170600000 197640000 54674000 46305000 50213000 606720000 606080000 625450000 77366000 84401000 71229000 236660000 231160000 219480000 3681 384 3579 69689;69690;69691;69692;69693;69694;69695;69696;69697;69698;69699;69700;69701;69702;69703;69704;69705;69706;69707;69708;69709;69710;69711;69712;69713;69714;69715;69716;69717;69718;69719;69720;69721;69722;69723;69724;69725;69726;69727;69728;69729;69730;69731 42431;42432;42433;42434;42435;42436;42437;42438;42439;42440;42441;42442;42443;42444;42445;42446;42447;42448;42449;42450;42451;42452;42453;42454;42455;42456;42457;42458;42459;42460;42461;42462 42460 32 DPNEMLVR Unmodified 972.46987 0.46986564 281 P0A6U5 rsmG Ribosomal RNA small subunit methyltransferase G yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.231 22.504 2 9.7266E-05 9723 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 161.68 147.02 176830000 15310000 13827000 11585000 0 0 0 14636000 14939000 15603000 0 0 0 12693000 11661000 13931000 0 0 0 18123000 15989000 18529000 0 0 0 3682 281 3580 69732;69733;69734;69735;69736;69737;69738;69739;69740;69741;69742;69743 42463;42464;42465;42466;42467;42468;42469 42464 7 DPNGIRPLVLGK Unmodified 1277.7456 0.74557022 978 P0AG16 purF Amidophosphoribosyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 28.496 27.254 3 0.013847 12408 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 51.252 46.036 68774000 16354000 14796000 14439000 0 0 0 2600300 2989000 3467500 0 0 0 2324800 3346000 3652900 0 0 0 0 0 4804400 0 0 0 3683 978 3581 69744;69745;69746;69747;69748;69749;69750;69751;69752;69753 42470;42471 42471 2 DPNPHVRPVPGYGEK Unmodified 1660.8322 0.8321534 812 P0ADV5 yhbW Uncharacterized protein YhbW yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 13.977 14.826 2;3 9.2564E-05 4787 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 80.411 77.653 236810000 26091000 31357000 24217000 0 0 0 22889000 23813000 19442000 0 0 0 9823500 8434900 9171500 0 0 0 21324000 19268000 20982000 0 0 0 3684 812 3582 69754;69755;69756;69757;69758;69759;69760;69761;69762;69763;69764;69765;69766;69767;69768;69769;69770;69771;69772;69773;69774;69775 42472;42473;42474;42475;42476;42477;42478;42479;42480 42473 9 DPNQTEFAQAVR Unmodified 1374.6528 0.65279205 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 25.032 24 2 6.9669E-31 10477 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 295.96 291.35 537880000 136210000 125640000 130930000 0 0 0 17136000 20516000 23588000 0 908050 0 8452700 11204000 7505600 0 0 0 17771000 19746000 18276000 0 0 0 3685 26 3583 69776;69777;69778;69779;69780;69781;69782;69783;69784;69785;69786;69787;69788 42481;42482;42483;42484 42484 4 DPNVQMVPER Unmodified 1183.5656 0.56555694 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 23.133 22.283 2 0.011862 9642 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 76.1 72.165 50421000 0 0 0 0 0 0 12897000 10370000 10069000 0 0 0 0 0 0 0 0 0 17085000 0 0 0 0 0 3686 180 3584 69789;69790;69791;69792 42485 42485 0 DPQEAER Unmodified 843.37226 0.37226009 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1 2 1 1 1 5.9141 6.7975 2 0.0072941 1081 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 91.906 82.666 86423000 12752000 10637000 12430000 0 0 0 0 0 4284000 0 0 0 9608700 9976100 7655500 0 0 0 5842500 7443200 5794200 0 0 0 3687 297 3585 69793;69794;69795;69796;69797;69798;69799;69800;69801;69802;69803;69804 42486;42487;42488;42489 42489 4 DPQEAQNIINAQK Unmodified 1467.7318 0.73177065 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 23.31 22.589 2;3 7.9633E-18 9792 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 267.39 263.8 1858000000 97395000 87921000 77792000 0 0 0 150220000 175030000 164340000 0 0 0 153750000 123110000 119820000 0 0 0 236550000 245960000 226100000 0 0 0 3688 1491 3586 69805;69806;69807;69808;69809;69810;69811;69812;69813;69814;69815;69816;69817;69818;69819;69820;69821;69822;69823;69824;69825;69826;69827;69828 42490;42491;42492;42493;42494;42495;42496;42497;42498;42499;42500;42501;42502;42503;42504 42493 15 DPQMLLITAIDDTMR Unmodified 1731.8535 0.85354204 628 P0AB46 ymgD Uncharacterized protein YmgD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.796 54.323 2 6.0412E-05 26027 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.944 77.289 250920000 12947000 11011000 8765300 0 0 0 13338000 7510600 14506000 0 0 0 40808000 43613000 37314000 0 0 0 16011000 24376000 20718000 0 0 0 3689 628 3587 69829;69830;69831;69832;69833;69834;69835;69836;69837;69838;69839;69840 42505 42505 1 DPQQIISGNEK Unmodified 1227.6095 0.60953025 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.954 20.248 2 3.5529E-14 7834 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 246.86 230.52 2075700000 181970000 157870000 151010000 1353700 1008100 1064200 184560000 179820000 179260000 3525700 2369200 3055400 151380000 134050000 143190000 0 0 0 187080000 204360000 204120000 1246100 1917200 1476200 3690 62 3588 69841;69842;69843;69844;69845;69846;69847;69848;69849;69850;69851;69852;69853;69854;69855;69856;69857;69858;69859;69860;69861 42506;42507;42508;42509;42510;42511;42512;42513;42514;42515;42516;42517;42518;42519;42520 42514 15 DPQQIQQIFNQY Unmodified 1520.726 0.72595699 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 53.833 52.404 2 2.1796E-07 25834 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 156.46 150.61 954600000 0 0 3026000 0 0 1452400 119490000 134590000 122270000 0 0 0 113590000 107190000 104070000 0 0 0 96381000 74728000 77811000 0 0 0 3691 40 3589 69862;69863;69864;69865;69866;69867;69868;69869;69870;69871;69872 42521;42522;42523;42524;42525;42526;42527;42528;42529 42523 9 DPQVFAAGDIVEGDK Unmodified 1559.7468 0.74675201 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 39.281 37.45 2 8.5298E-10 18550 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 156.81 132.35 261170000 0 0 0 0 0 0 63219000 54948000 64343000 0 984200 0 17704000 18570000 18715000 0 0 0 7772100 7139000 7778500 0 0 0 3692 1861 3590 69873;69874;69875;69876;69877;69878;69879;69880;69881;69882 42530;42531;42532;42533;42534;42535 42530 6 DPSLIWR Unmodified 885.47085 0.47085192 541 P0A9N8 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 37.061 35.348 2 0.0016502 17489 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.24 103.62 45577000 0 0 1266600 0 0 0 7744100 5210700 5595900 0 0 0 6047200 4687800 5801000 0 0 0 4367800 0 4855600 0 0 0 3693 541 3591 69883;69884;69885;69886;69887;69888;69889;69890;69891;69892 42536;42537;42538;42539;42540;42541;42542;42543 42536 8 DPSLSLYAIPDGDVK Unmodified 1588.7985 0.79845323 1174 P21179 katE Catalase HPII yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 47.047 45.552 2 2.218E-15 22466 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 197.07 185.97 259820000 48997000 42297000 44105000 0 0 0 39197000 42489000 42741000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3694 1174 3592 69893;69894;69895;69896;69897;69898 42544;42545 42544 2 DPTTQYYTGEYPK Unmodified 1561.6937 0.69365381 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 27.636 26.402 2 1.067E-23 12102 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 227.81 227.81 243470000 58073000 52705000 52087000 0 0 0 24306000 22854000 26109000 0 0 0 0 0 0 0 0 0 2968200 0 4362800 0 0 0 3695 995 3593 69899;69900;69901;69902;69903;69904;69905;69906 42546;42547;42548;42549;42550;42551 42549 6 DPYLYPGLDIMR Unmodified 1451.7119 0.71188683 1166 P20605 fic Probable adenosine monophosphate-protein transferase fic yes yes 0 0 0 By matching By MS/MS 1 1 52.725 51.249 2 0.016707 25315 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 60.398 56.522 27920000 0 0 0 0 0 0 12377000 15543000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3696 1166 3594 69907;69908 42552 42552 0 DQAAIDASCK Unmodified 1077.4761 0.47607323 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 12.195 12.94 2 1.9583E-05 3662 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 149.72 145.79 403720000 76835000 69630000 76918000 0 0 0 51628000 44640000 53595000 0 0 0 0 0 0 0 0 0 30473000 0 0 0 0 0 3697 713 3595 69909;69910;69911;69912;69913;69914;69915 42553;42554;42555 42554 3 DQAEKEVVDWETR Unmodified 1603.7478 0.74781464 1720 P68206 yjbJ UPF0337 protein YjbJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 2 2 1 2 2 1 2 26.181 24.939 2;3 4.6353E-31 11168 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 257.26 249.04 462740000 105950000 95117000 95855000 1548400 2435900 1143900 42616000 42975000 36203000 0 0 838650 5122200 0 0 0 0 0 10431000 9032400 13470000 0 0 0 3698 1720 3596 69916;69917;69918;69919;69920;69921;69922;69923;69924;69925;69926;69927;69928;69929;69930;69931;69932;69933;69934;69935;69936;69937;69938;69939 42556;42557;42558;42559;42560;42561;42562;42563;42564;42565 42564 10 DQAGIDK Unmodified 745.36063 0.36063277 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.65 11.21 2 0.02038 2518 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 75.189 43.886 3971500000 728440000 751320000 545450000 0 0 0 0 0 1044000000 0 3706000 4378800 0 0 892600000 0 0 0 0 0 0 0 0 1563400 3699 270 3597 69940;69941;69942;69943;69944;69945;69946;69947;69948;69949;69950;69951;69952;69953;69954 42566;42567;42568;42569;42570;42571;42572;42573;42574;42575 42574 10 DQAGIDKIMIDLDGTENK Unmodified 1974.9568 0.95682114 270 P0A6P9 eno Enolase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 44.633 42.714 3 2.5964E-05 15233 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 65.47 61.866 25289000 0 0 0 4843200 3813500 3827400 0 0 0 0 2794700 4101100 0 0 0 0 0 0 0 0 0 2097300 1754100 2058200 3700 270 3598 69955;69956;69957;69958;69959;69960;69961;69962 42576;42577 42577 2 DQAGIIR Unmodified 771.4239 0.42390173 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 12.06 12.758 2 0.1071 3845 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 61.997 29.884 764460000 105740000 0 84752000 1301800 0 0 103030000 2812800 0 1276200 997760 0 119780000 0 0 0 0 0 0 117860000 226910000 0 0 0 3701 731 3599 69963;69964;69965;69966;69967;69968;69969;69970;69971;69972;69973 42578;42579 42578 0 DQAGSMELK Unmodified 977.4488 0.44879585 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.845 16.661 2 0.00038023 5907 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.74 97.815 534700000 38121000 34379000 34343000 0 0 0 35757000 45619000 40408000 0 0 0 40433000 36718000 32906000 0 0 0 62955000 65752000 67303000 0 0 0 3702 1169 3600 69974;69975;69976;69977;69978;69979;69980;69981;69982;69983;69984;69985 42580;42581;42582;42583;42584;42585;42586;42587;42588;42589;42590;42591 42580 12 DQAVPPTINLDNPDEGCDLDFVPHEAR Unmodified 3033.3774 0.37742841 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.387 45.989 3 5.1725E-17 22133 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 156.43 156.43 916130000 50904000 53242000 37064000 0 0 0 72096000 89945000 74104000 0 0 0 98543000 82150000 74347000 0 0 0 98421000 91861000 93457000 0 0 0 3703 596 3601 69986;69987;69988;69989;69990;69991;69992;69993;69994;69995;69996;69997 42592;42593;42594;42595;42596;42597;42598;42599;42600;42601;42602;42603;42604;42605;42606;42607;42608;42609;42610;42611;42612;42613;42614;42615;42616;42617 42602 26 DQDDIYPVFR Unmodified 1266.5881 0.58806652 1839 P76235 yeaH UPF0229 protein YeaH yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 40.921 39.416 2 1.8129E-06 19044 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.88 152.02 46112000 14411000 15955000 11510000 0 0 0 0 0 0 0 0 0 1428600 0 0 0 0 0 2807100 0 0 0 0 0 3704 1839 3602 69998;69999;70000;70001;70002 42618;42619 42619 1 DQEAWTR Unmodified 904.40389 0.40389457 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.783 16.311 2 0.00132 5558 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 132.09 123.94 790100000 18404000 16942000 17337000 625020 697170 0 88063000 87777000 74363000 29785000 24046000 25239000 50647000 43401000 50384000 13805000 10618000 11603000 71312000 70948000 64511000 6639300 6667100 6285900 3705 30 3603 70003;70004;70005;70006;70007;70008;70009;70010;70011;70012;70013;70014;70015;70016;70017;70018;70019;70020;70021;70022;70023;70024;70025 42620;42621;42622;42623;42624;42625;42626;42627;42628;42629;42630;42631;42632;42633;42634;42635;42636;42637;42638 42632 19 DQEFSSDLGSR Unmodified 1239.5368 0.53675924 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.88 22.259 2 9.3521E-15 9420 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 182.76 179.19 1948900000 243330000 0 210930000 0 0 0 174690000 188310000 193010000 1339100 0 0 151440000 125530000 136090000 0 0 0 176390000 169600000 178220000 0 0 0 3706 94 3604 70026;70027;70028;70029;70030;70031;70032;70033;70034;70035;70036;70037;70038 42639;42640;42641;42642;42643;42644;42645;42646;42647;42648;42649;42650 42646 12 DQFFHGVGVDGVYLPFHK Unmodified 2061.0108 0.010846043 897 P0AEY5 mdaB Modulator of drug activity B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 46.428 44.947 3;4 6.5539E-05 21908 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.564 74.461 481920000 48756000 43386000 41077000 0 0 0 44286000 39730000 40793000 0 0 0 38053000 39432000 39103000 0 0 0 36158000 39064000 32085000 0 0 0 3707 897 3605 70039;70040;70041;70042;70043;70044;70045;70046;70047;70048;70049;70050;70051;70052;70053;70054;70055;70056;70057;70058;70059;70060;70061;70062 42651;42652;42653;42654;42655;42656;42657;42658;42659;42660;42661;42662;42663;42664 42660 14 DQFNSMK Unmodified 868.3749 0.37490263 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.207 14.785 2 0.0063618 4658 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.793 87.11 895150000 22743000 20985000 19935000 4108700 3605700 5024500 129180000 133800000 135370000 40269000 38780000 40590000 63118000 0 73480000 5169200 4162700 3932500 47575000 44611000 39853000 6927600 6011100 5920100 3708 664 3606 70063;70064;70065;70066;70067;70068;70069;70070;70071;70072;70073;70074;70075;70076;70077;70078;70079;70080;70081;70082;70083;70084;70085 42665;42666;42667;42668;42669;42670;42671;42672;42673;42674;42675;42676;42677;42678;42679;42680;42681 42681 17 DQFNSMKK Unmodified 996.46987 0.46986564 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 11.524 11.799 2 0.018467 2599 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 71.342 59.621 109820000 5627800 0 0 0 0 0 0 0 0 34363000 36054000 28734000 0 0 0 0 0 0 0 0 0 5039800 0 0 3709 664 3607 70086;70087;70088;70089;70090 42682 42682 1 DQFVQPVVK Unmodified 1058.576 0.57604528 779 P0ADB1 osmE Osmotically-inducible lipoprotein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.673 24.463 2 0.00066637 10827 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.37 95.42 1697800000 207330000 206100000 185680000 39842000 37360000 37319000 161470000 169380000 157950000 63836000 60801000 62724000 22860000 20553000 21215000 0 0 0 70072000 73463000 67372000 12160000 10437000 9883300 3710 779 3608 70091;70092;70093;70094;70095;70096;70097;70098;70099;70100;70101;70102;70103;70104;70105;70106;70107;70108;70109;70110;70111 42683;42684;42685;42686;42687;42688;42689;42690;42691;42692;42693;42694;42695;42696;42697;42698;42699;42700;42701;42702 42698 19 DQGIDLR Unmodified 815.41373 0.41373097 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.616 19.93 2 0.0067291 5972 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 94.262 22.241 9507800000 662240000 667420000 574210000 63516000 62912000 64123000 744280000 721620000 786910000 0 215140000 189230000 667750000 578280000 555760000 14553000 15864000 12345000 894120000 934650000 889960000 56664000 64435000 71817000 3711 293 3609 70112;70113;70114;70115;70116;70117;70118;70119;70120;70121;70122;70123;70124;70125;70126;70127;70128;70129;70130;70131;70132;70133;70134;70135 42703;42704;42705;42706;42707;42708;42709;42710;42711;42712;42713;42714;42715;42716;42717;42718;42719;42720;42721;42722;42723 42710 21 DQGKDPATLDYVVPFK Unmodified 1791.9043 0.90431529 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 40.531 38.857 2;3 6.2232E-39 19157 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 255.85 252.72 7857300000 751180000 738930000 639870000 0 0 0 991520000 969190000 963420000 0 0 0 459950000 344610000 414530000 0 0 0 529470000 543020000 511600000 0 0 0 3712 277 3610 70136;70137;70138;70139;70140;70141;70142;70143;70144;70145;70146;70147;70148;70149;70150;70151;70152;70153;70154;70155;70156;70157;70158 42724;42725;42726;42727;42728;42729;42730;42731;42732;42733;42734;42735;42736;42737;42738;42739;42740;42741;42742;42743 42728 20 DQGNTIVVIEHNLDVIK Unmodified 1906.016 0.015991 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 1 2 1 1 1 1 2 2 1 1 1 1 2 2 2 2 1 1 2 1 1 1 47.11 45.927 2;3 1.3194E-10 16422 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 147.7 142.2 360690000 32736000 25304000 21600000 820090 1165200 1164200 17801000 21528000 7340500 4299100 0 3790000 20715000 14892000 17017000 38324000 31707000 40689000 19848000 14897000 18360000 3078200 1734900 1877900 3713 222 3611 70159;70160;70161;70162;70163;70164;70165;70166;70167;70168;70169;70170;70171;70172;70173;70174;70175;70176;70177;70178;70179;70180;70181;70182;70183;70184;70185;70186;70187;70188;70189;70190 42744;42745;42746;42747;42748;42749 42746 5 DQGPPDLDDIFR Unmodified 1386.6416 0.64155866 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.416 49.008 2 3.1423E-08 23719 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 163.88 153.12 636340000 16066000 14362000 19859000 8493600 10092000 8955900 50945000 46969000 52991000 0 0 0 46947000 44194000 43372000 0 0 0 74148000 80372000 74038000 16461000 15445000 12629000 3714 649 3612 70191;70192;70193;70194;70195;70196;70197;70198;70199;70200;70201;70202;70203;70204;70205;70206;70207;70208 42750;42751;42752;42753;42754;42755;42756;42757;42758;42759;42760;42761;42762;42763;42764 42757 14 DQGPPDLDDIFRK Unmodified 1514.7365 0.73652168 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.583 38.704 3 2.452E-05 15322 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 86.803 86.757 142610000 2891000 4063900 0 6240100 6875900 7372000 5138000 4683300 4985200 18188000 13456000 11233000 3312700 4233800 2829600 0 0 0 5208400 3994600 6494000 10477000 12119000 8811700 3715 649 3613 70209;70210;70211;70212;70213;70214;70215;70216;70217;70218;70219;70220;70221;70222;70223;70224;70225;70226;70227;70228 42765;42766;42767 42765 3 DQGVVVNNVK Unmodified 1070.572 0.57202253 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.701 16.368 2 0.00015415 5739 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.49 107.43 628940000 36309000 33293000 26718000 1077600 852290 738750 57896000 55834000 55485000 3354900 2924200 2620800 54843000 47915000 49608000 0 0 0 64016000 70819000 62774000 1864600 0 0 3716 1044 3614 70229;70230;70231;70232;70233;70234;70235;70236;70237;70238;70239;70240;70241;70242;70243;70244;70245;70246;70247 42768;42769;42770;42771;42772;42773;42774 42768 6 DQIDEVDK Unmodified 960.44001 0.4400053 153 P07023 tyrA T-protein;Chorismate mutase;Prephenate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 13.826 14.694 2 0.015232 4678 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 70.525 58.318 91122000 7544700 8150600 8199100 0 0 0 13243000 13361000 11565000 0 0 0 7245600 4209000 7452000 0 0 0 6365000 3787100 0 0 0 0 3717 153 3615 70248;70249;70250;70251;70252;70253;70254;70255;70256;70257;70258 42775 42775 1 DQIFNNPR Unmodified 1002.4883 0.4882929 1463 P37313 dppF Dipeptide transport ATP-binding protein DppF yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 19.243 19.786 2 0.00075894 5593 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 124.37 117.92 91606000 23351000 25813000 24269000 5642900 5436000 7094100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3718 1463 3616 70259;70260;70261;70262;70263;70264 42776 42776 1 DQIGLIVVATTSATHAFPSAACQIQSMLGIK Unmodified 3227.6683 0.66825446 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 1 1 55.724 54.267 3;4 4.5326E-43 26639 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 215.86 213.8 997030000 111920000 93827000 95924000 0 0 0 95415000 29628000 38729000 0 0 0 91272000 103510000 88253000 0 0 0 118400000 66937000 63207000 0 0 0 3719 273 3617 70265;70266;70267;70268;70269;70270;70271;70272;70273;70274;70275;70276;70277;70278;70279;70280;70281;70282;70283;70284 42777;42778;42779;42780;42781;42782;42783;42784;42785;42786 42780 10 DQITALDLAGDELGFPGSLFLSHFNR Unmodified 2832.4083 0.40825825 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.629 54.379 3 2.0808E-31 21892 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 199.83 187.03 897090000 42674000 55319000 51741000 3768500 3552300 3809200 68915000 60373000 61484000 28317000 24072000 26391000 73423000 74739000 68343000 13453000 11907000 14623000 71985000 65643000 64838000 3836500 3884900 0 3720 1196 3618 70285;70286;70287;70288;70289;70290;70291;70292;70293;70294;70295;70296;70297;70298;70299;70300;70301;70302;70303;70304;70305;70306;70307 42787;42788;42789;42790;42791;42792;42793;42794;42795;42796;42797;42798 42789 11 DQIVEALLAWHR Unmodified 1449.7728 0.7728476 621 P0AB03 ycbJ Uncharacterized protein YcbJ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.776 49.445 3 9.633E-06 24389 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 111.63 100.05 67464000 5255200 4358900 5940400 0 0 0 6901300 9022500 8637300 0 0 0 5574200 3998200 4583000 0 0 0 3484300 6101100 3607500 0 0 0 3721 621 3619 70308;70309;70310;70311;70312;70313;70314;70315;70316;70317;70318;70319 42799;42800;42801;42802;42803;42804 42800 6 DQKKPEQGTEVLK Unmodified 1498.7991 0.79912193 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 2 11.421 12.038 2;3 1.3923E-17 3129 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 223.31 184.56 1212200000 3662300 0 0 3271700 0 0 106680000 115230000 101890000 11665000 5906800 3136300 130510000 144590000 121200000 7500400 10970000 12640000 149080000 128140000 120870000 12328000 9513200 13372000 3722 994 3620 70320;70321;70322;70323;70324;70325;70326;70327;70328;70329;70330;70331;70332;70333;70334;70335;70336;70337;70338;70339;70340;70341;70342;70343;70344;70345;70346;70347;70348;70349;70350 42805;42806;42807;42808;42809;42810;42811;42812;42813;42814;42815;42816;42817;42818;42819 42812 15 DQLEQITR Unmodified 1001.5142 0.5141733 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 20.034 20.398 2 0.00076587 7960 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 124.08 92.776 527230000 0 0 0 0 0 0 64161000 61449000 62311000 0 0 576270 51378000 47915000 0 0 0 0 84305000 79962000 75175000 0 0 0 3723 744 3621 70351;70352;70353;70354;70355;70356;70357;70358;70359;70360 42820;42821;42822;42823;42824 42821 5 DQLFVGDDAIR Unmodified 1247.6146 0.61461563 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 37.24 35.462 2 1.116E-05 17395 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 145.9 137.49 170130000 19566000 0 0 0 0 0 24351000 27099000 20314000 0 0 0 0 23003000 22578000 0 0 0 0 33221000 0 0 0 0 3724 505 3622 70361;70362;70363;70364;70365;70366;70367;70368 42825;42826;42827;42828;42829;42830 42826 6 DQLHQLR Unmodified 908.48281 0.48281359 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.108 12.866 2 0.022682 3623 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 74.439 66.767 98150000 15101000 13896000 13047000 0 0 0 10704000 7264300 8705400 0 0 0 5233100 4855500 4829300 0 0 5044500 3893000 0 5578500 0 0 0 3725 426 3623 70369;70370;70371;70372;70373;70374;70375;70376;70377;70378;70379;70380 42831;42832 42832 2 DQLIAGVQDAFADK Unmodified 1489.7413 0.7412727 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.329 42.634 2 2.8658E-06 20713 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 122.34 112.04 267820000 0 0 0 0 0 0 41922000 48988000 43860000 0 0 0 0 0 0 0 0 0 44634000 46684000 41733000 0 0 0 3726 1572 3624 70381;70382;70383;70384;70385;70386 42833;42834;42835;42836;42837 42837 5 DQLLENLQEGMEVK Unmodified 1644.8029 0.80288668 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1 2 3 2 1 1 1 3 3 2 1 1 1 3 2 2 1 2 1 46.186 44.72 2;3 2.5973E-26 22072 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 228.78 224.74 5112200000 690480000 729390000 694100000 4001900 3417800 3668000 257280000 265390000 252040000 12607000 13477000 12461000 401700000 393250000 36920000 12354000 7004900 11466000 414400000 452210000 424340000 5982300 8143600 6115500 3727 990 3625 70387;70388;70389;70390;70391;70392;70393;70394;70395;70396;70397;70398;70399;70400;70401;70402;70403;70404;70405;70406;70407;70408;70409;70410;70411;70412;70413;70414;70415;70416;70417;70418;70419;70420;70421;70422;70423;70424;70425;70426;70427;70428 42838;42839;42840;42841;42842;42843;42844;42845;42846;42847;42848;42849;42850;42851;42852;42853;42854;42855;42856;42857;42858;42859;42860;42861;42862;42863;42864;42865;42866;42867;42868;42869;42870;42871;42872;42873 42841 35 DQLNPGEYGLFLGTAHPAK Unmodified 2027.0112 0.011239973 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 42.208 40.509 2;3 6.5291E-10 19839 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 170.74 158.47 1333100000 189750000 182460000 166750000 0 0 1430700 64820000 67450000 60583000 0 0 0 73908000 72976000 68972000 0 0 0 128930000 128010000 127100000 0 0 0 3728 52 3626 70429;70430;70431;70432;70433;70434;70435;70436;70437;70438;70439;70440;70441;70442;70443;70444;70445;70446;70447;70448;70449;70450;70451;70452;70453 42874;42875;42876;42877;42878;42879;42880;42881;42882;42883;42884;42885;42886;42887;42888 42877 12 DQNEDIDREDFAQR Unmodified 1749.7554 0.75541922 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 19.436 19.793 2;3 1.0162E-44 7649 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 315.11 300.14 867070000 61888000 69252000 57719000 0 0 0 65679000 63304000 59850000 1899100 0 1144200 66514000 70019000 81737000 3240700 2302000 2302900 80975000 80494000 89937000 2941700 3313000 2558800 3729 1445 3627 70454;70455;70456;70457;70458;70459;70460;70461;70462;70463;70464;70465;70466;70467;70468;70469;70470;70471;70472;70473;70474;70475;70476;70477;70478;70479;70480;70481;70482;70483;70484;70485 42889;42890;42891;42892;42893;42894;42895;42896;42897;42898;42899;42900;42901;42902;42903;42904;42905;42906;42907 42898 19 DQPIFDYHCHLPPQQIAEDYR Unmodified 2641.202 0.20197064 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 37.093 35.436 4 0.10578 17443 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 27.055 26.805 127390000 15659000 16874000 15264000 0 0 0 15496000 16146000 12132000 0 0 0 6463800 6438800 7718700 0 0 0 0 7767900 7432200 0 0 0 3730 427 3628 70486;70487;70488;70489;70490;70491;70492;70493;70494;70495;70496 42908 42908 1 DQPWPEGGK Unmodified 1012.4614 0.46140945 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.496 19.892 2 0.0034215 7735 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 81.642 78.552 782620000 58751000 68912000 52780000 2178800 0 0 99314000 106600000 100720000 0 4364500 3719500 54512000 66970000 64599000 0 0 0 31244000 32260000 35693000 0 0 0 3731 585 3629 70497;70498;70499;70500;70501;70502;70503;70504;70505;70506;70507;70508;70509;70510;70511 42909;42910;42911;42912;42913;42914;42915;42916;42917;42918 42912 10 DQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIR Unmodified 3647.8849 0.88486425 1436 P34209 ydcF Protein YdcF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 50.641 49.272 5 1.7447E-07 24103 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.19 78.761 176710000 29751000 35491000 28726000 0 0 0 16427000 19048000 11953000 0 0 0 0 5422500 7067800 0 0 0 8453100 6066800 8306000 0 0 0 3732 1436 3630 70512;70513;70514;70515;70516;70517;70518;70519;70520;70521;70522 42919;42920;42921 42920 3 DQSHLSMEER Unmodified 1230.5299 0.52989972 425 P0A8F4 udk Uridine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 12.638 13.374 2;3 0.00046451 3856 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 97.472 84.418 328520000 22697000 25496000 24741000 0 0 0 28364000 22874000 22787000 7376800 4637500 4509800 27311000 30945000 24265000 0 0 0 25553000 30427000 26536000 0 0 0 3733 425 3631 70523;70524;70525;70526;70527;70528;70529;70530;70531;70532;70533;70534;70535;70536;70537;70538;70539;70540;70541;70542;70543;70544;70545;70546;70547;70548;70549;70550 42922;42923;42924;42925;42926;42927;42928;42929 42923 5 DQSNLSPAQYLK Unmodified 1362.6779 0.67794416 1674 P64476 ydiH Uncharacterized protein YdiH yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 33.833 32.181 2 0.001697 15345 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.417 64.597 246720000 32781000 27270000 28833000 0 5710400 5081100 0 0 38234000 21481000 18820000 18287000 11933000 0 0 0 0 0 13575000 11692000 13027000 0 0 0 3734 1674 3632 70551;70552;70553;70554;70555;70556;70557;70558;70559;70560;70561;70562;70563 42930;42931 42931 2 DQSNLSPAQYLKR Unmodified 1518.7791 0.77905519 1674 P64476 ydiH Uncharacterized protein YdiH yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 27.171 25.554 2 0.019334 9345 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 56.359 49.976 12560000 0 0 0 1534800 2186700 1946100 0 0 0 1846400 2636000 2410000 0 0 0 0 0 0 0 0 0 0 0 0 3735 1674 3633 70564;70565;70566;70567;70568;70569 42932 42932 1 DQSQEDPR Unmodified 973.4101 0.41010216 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.5776 6.4435 2 0.0010158 1078 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 113.5 102.13 1915300000 214610000 250490000 215440000 0 0 0 78934000 89232000 82852000 0 0 0 122990000 100650000 106760000 0 0 0 243980000 210380000 198970000 0 0 0 3736 392 3634 70570;70571;70572;70573;70574;70575;70576;70577;70578;70579;70580;70581 42933;42934;42935;42936;42937;42938;42939;42940;42941;42942;42943;42944 42944 12 DQTYLYVEK Unmodified 1157.5605 0.56045479 627 P0AB43 ycgL Protein YcgL yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.366 26.172 2 0.0015282 11950 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.37 85.971 507070000 57536000 58296000 49699000 0 0 764810 33569000 36309000 31542000 0 0 0 40078000 27649000 28890000 0 0 0 48208000 46452000 47523000 555610 0 0 3737 627 3635 70582;70583;70584;70585;70586;70587;70588;70589;70590;70591;70592;70593;70594;70595 42945;42946;42947;42948;42949;42950;42951;42952;42953 42951 9 DQVAFFHGCFVNYNHPQLGK Unmodified 2377.1062 0.10621977 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 1 1 1 1 37.443 35.513 3;4 2.7699E-07 14373 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 104.95 101.98 354830000 0 0 0 0 0 0 58434000 56074000 54294000 35746000 27489000 29089000 24370000 14731000 18640000 0 0 3128300 17967000 8639200 0 2239600 1894500 2091200 3738 500 3636 70596;70597;70598;70599;70600;70601;70602;70603;70604;70605;70606;70607;70608;70609;70610;70611;70612;70613;70614;70615;70616;70617;70618;70619;70620 42954;42955;42956;42957;42958 42954 5 DQVDYMDVSTQQVVSVGASLIPFLEHDDANR Oxidation (M) 3463.6202 0.62017787 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 55.163 54.45 3;4 9.8153E-43 20712 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 205.45 203.73 683480000 0 0 0 0 0 0 0 0 0 34804000 40486000 48762000 0 0 0 120180000 124680000 139650000 0 0 0 64361000 55963000 54585000 3739 463 3637 70621;70622;70623;70624;70625;70626;70627;70628;70629;70630;70631;70632 42959;42960;42961;42962;42963;42964;42965;42966;42967;42968;42969 42961 258 11 DQVDYMDVSTQQVVSVGASLIPFLEHDDANR Unmodified 3447.6253 0.62526325 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 1 2 1 5 4 5 3 2 1 4 4 4 2 2 2 4 4 4 55.881 54.708 3;4;5 3.7025E-68 21785 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 256.43 254.3 34634000000 163770000 144850000 159700000 14271000 13211000 15132000 25821000 98159000 21811000 2166000000 2127400000 1889400000 146010000 149920000 35024000 5993000000 6691000000 7751100000 198660000 197400000 206820000 2197100000 2042100000 2186700000 3740 463 3637 70633;70634;70635;70636;70637;70638;70639;70640;70641;70642;70643;70644;70645;70646;70647;70648;70649;70650;70651;70652;70653;70654;70655;70656;70657;70658;70659;70660;70661;70662;70663;70664;70665;70666;70667;70668;70669;70670;70671;70672;70673;70674;70675;70676;70677;70678;70679;70680;70681;70682;70683;70684;70685;70686;70687;70688;70689;70690;70691;70692;70693;70694;70695;70696;70697;70698;70699 42970;42971;42972;42973;42974;42975;42976;42977;42978;42979;42980;42981;42982;42983;42984;42985;42986;42987;42988;42989;42990;42991;42992;42993;42994;42995;42996;42997;42998;42999;43000;43001;43002;43003 42988 34 DQVEDYAR Unmodified 994.43559 0.43558863 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.987 15.622 2 0.0019749 5293 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 104.37 93.006 42623000 0 0 0 1887300 1610000 1739600 0 0 0 4942500 2565700 2729100 5757400 0 0 0 0 0 6114100 5938200 8109500 0 0 1229300 3741 1083 3638 70700;70701;70702;70703;70704;70705;70706;70707;70708;70709;70710;70711;70712 43004;43005;43006;43007;43008;43009 43006 6 DQVGNILIR Unmodified 1026.5822 0.58219329 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.65 31.211 2 0.00019889 14604 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.67 93.827 2099100000 0 368900000 337310000 1981500 2018200 2037900 436090000 5063000 0 0 0 2373300 201310000 209060000 227070000 0 0 0 0 305860000 0 0 0 0 3742 1109 3639 70713;70714;70715;70716;70717;70718;70719;70720;70721;70722;70723;70724;70725 43010;43011;43012;43013;43014;43015;43016;43017;43018 43015 8 DQVLPLILTGPK Unmodified 1292.7704 0.77038799 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.897 49.636 2 0.0014795 24086 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.942 66.605 175820000 18826000 21926000 15709000 0 0 0 14742000 14083000 11786000 0 0 0 12912000 13497000 11069000 0 0 0 14222000 13722000 13331000 0 0 0 3743 801 3640 70726;70727;70728;70729;70730;70731;70732;70733;70734;70735;70736;70737 43019 43019 1 DQYDLHPVYK Unmodified 1276.6088 0.60880197 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 2 2 1 1 2 2 2 1 1 2 2 2 1 1 21.488 21.587 2;3 3.1883E-05 8927 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 154.85 149.63 1580700000 376480000 302960000 315910000 0 0 343370 2716100 0 0 0 0 0 42836000 38774000 32809000 0 539640 764910 154530000 147940000 160360000 0 1760800 1951500 3744 65 3641 70738;70739;70740;70741;70742;70743;70744;70745;70746;70747;70748;70749;70750;70751;70752;70753;70754;70755;70756;70757;70758;70759;70760;70761;70762 43020;43021;43022;43023;43024;43025;43026;43027;43028;43029;43030;43031;43032;43033;43034 43021 15 DRDCLIVGGGDVAER Unmodified 1630.7733 0.77331789 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 24.664 23.653 2 3.3763E-06 10575 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.92 85.301 44299000 5968900 5135600 4898000 0 0 0 4765200 3846300 3350900 0 0 0 2374900 0 1915500 0 0 0 3918300 4987300 3138400 0 0 0 3745 843 3642 70763;70764;70765;70766;70767;70768;70769;70770;70771;70772;70773 43035;43036 43035 2 DREGIVQVFFDPDR Unmodified 1691.8267 0.82673367 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 47.202 45.798 2;3 4.5403E-06 22303 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.466 87.415 1376600000 78918000 57103000 56025000 0 0 0 136350000 124720000 128930000 0 0 0 128410000 116160000 128310000 0 0 0 138250000 147390000 136050000 0 0 0 3746 1189 3643 70774;70775;70776;70777;70778;70779;70780;70781;70782;70783;70784;70785;70786;70787;70788;70789;70790;70791;70792;70793;70794;70795 43037;43038;43039;43040;43041;43042;43043;43044;43045;43046;43047;43048;43049;43050 43040 14 DREGIVQVFFDPDRADALK Unmodified 2190.1069 0.10693127 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 45.825 44.273 3;4 3.2763E-14 20592 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 148.38 143.29 1796400000 138240000 114480000 120610000 0 2653000 0 138700000 126380000 128360000 3040700 3669200 1648500 168970000 133370000 152310000 0 0 0 197290000 194420000 172240000 0 0 0 3747 1189 3644 70796;70797;70798;70799;70800;70801;70802;70803;70804;70805;70806;70807;70808;70809;70810;70811;70812;70813;70814;70815;70816;70817;70818;70819;70820;70821;70822;70823 43051;43052;43053;43054;43055;43056;43057;43058;43059;43060;43061;43062;43063;43064 43064 13 DRETGEVK Unmodified 932.45632 0.45632407 1086 P13029 katG Catalase-peroxidase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 2 2 1 1 1 5.3408 6.2066 2 0.00066848 1133 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 142.04 119 889830000 95274000 102650000 81249000 0 0 0 0 148050000 105920000 0 0 0 64338000 66683000 67119000 0 0 0 58817000 51271000 48465000 0 0 0 3748 1086 3645 70824;70825;70826;70827;70828;70829;70830;70831;70832;70833;70834;70835;70836 43065;43066;43067;43068;43069;43070 43067 6 DREYQAIMPLK Unmodified 1362.6966 0.69657112 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.59 27.298 3 0.048134 13034 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 49.081 24.228 52468000 6200300 5376500 6251600 0 0 0 0 0 9879100 0 1782000 0 7919700 5198200 3873100 0 0 0 0 0 5396400 591130 0 0 3749 1164 3646 70837;70838;70839;70840;70841;70842;70843;70844;70845;70846;70847 43071;43072;43073 43072 3 DRFNVPVSDADIEK Unmodified 1603.7842 0.78420015 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 4 4 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 29.021 27.532 2;3 7.3459E-45 12674 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 283.05 259.2 8423300000 518850000 483290000 383930000 411310000 400570000 429590000 475040000 518160000 498040000 47777000 47161000 43500000 291770000 327380000 268110000 0 0 0 550340000 555800000 504450000 580620000 538310000 549350000 3750 939 3647 70848;70849;70850;70851;70852;70853;70854;70855;70856;70857;70858;70859;70860;70861;70862;70863;70864;70865;70866;70867;70868;70869;70870;70871;70872;70873;70874;70875;70876;70877;70878;70879;70880;70881;70882;70883;70884;70885;70886;70887;70888;70889;70890;70891;70892;70893;70894 43074;43075;43076;43077;43078;43079;43080;43081;43082;43083;43084;43085;43086;43087;43088;43089;43090;43091;43092;43093;43094;43095;43096;43097;43098;43099;43100;43101;43102;43103;43104;43105;43106;43107;43108;43109;43110;43111;43112;43113 43095 40 DRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQR Unmodified 3972.9282 0.92824521 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 8 7 7 4 3 4 4 4 5 2 3 3 4 3 4 4 4 4 8 8 8 44.786 43.23 3;4;5;6;7 4.3261E-34 16876 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 198.44 198.06 30121000000 235010000 205210000 255130000 3112400000 645400000 3185800000 379700000 333220000 253000000 766350000 778030000 801990000 123030000 126070000 144580000 291210000 219330000 237770000 362570000 357790000 318190000 3523700000 6864400000 6600800000 3751 939 3648 70895;70896;70897;70898;70899;70900;70901;70902;70903;70904;70905;70906;70907;70908;70909;70910;70911;70912;70913;70914;70915;70916;70917;70918;70919;70920;70921;70922;70923;70924;70925;70926;70927;70928;70929;70930;70931;70932;70933;70934;70935;70936;70937;70938;70939;70940;70941;70942;70943;70944;70945;70946;70947;70948;70949;70950;70951;70952;70953;70954;70955;70956;70957;70958;70959;70960;70961;70962;70963;70964;70965;70966;70967;70968;70969;70970;70971;70972;70973;70974;70975;70976;70977;70978;70979;70980;70981;70982;70983;70984;70985;70986;70987;70988;70989;70990;70991;70992;70993;70994;70995;70996;70997;70998;70999;71000;71001;71002;71003;71004;71005;71006 43114;43115;43116;43117;43118;43119;43120;43121;43122;43123;43124;43125;43126;43127;43128;43129;43130;43131;43132;43133;43134;43135;43136;43137;43138;43139;43140;43141;43142;43143;43144;43145;43146;43147;43148;43149;43150;43151;43152;43153;43154;43155;43156;43157;43158;43159;43160;43161;43162;43163;43164;43165;43166;43167;43168;43169;43170;43171;43172;43173;43174;43175;43176;43177;43178;43179;43180;43181;43182;43183;43184;43185;43186;43187;43188;43189;43190;43191;43192;43193;43194;43195;43196;43197;43198;43199;43200;43201;43202;43203 43161 89 DRFTPHPDLR Unmodified 1252.6313 0.63126874 1879 P76621 csiD Protein CsiD yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 14.944 15.643 3 0.16478 5212 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 21.759 19.245 25360000 7765800 9679000 7915000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3752 1879 3649 71007;71008;71009 43204 43204 1 DRGEDALIIYDDLSK Unmodified 1721.8472 0.84719434 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 42.916 41.312 2;3 3.3044E-37 20420 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 225.32 187.63 5824500000 111540000 152620000 175680000 43762000 63610000 54664000 671910000 620070000 370190000 134200000 109410000 133860000 458650000 405190000 443400000 47939000 47230000 68825000 442920000 457230000 476090000 104510000 113450000 117550000 3753 645 3650 71010;71011;71012;71013;71014;71015;71016;71017;71018;71019;71020;71021;71022;71023;71024;71025;71026;71027;71028;71029;71030;71031;71032;71033;71034;71035;71036;71037;71038;71039;71040;71041;71042;71043;71044;71045;71046 43205;43206;43207;43208;43209;43210;43211;43212;43213;43214;43215;43216;43217;43218;43219;43220;43221;43222;43223;43224;43225;43226;43227;43228;43229;43230;43231;43232;43233;43234;43235;43236;43237;43238;43239 43216 35 DRIDYQALPEHEK Unmodified 1612.7845 0.7845345 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 2 3 3 2 3 3 3 3 3 16.779 17.544 2;3;4 3.5624E-05 6535 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.38 88.51 662960000 27345000 23598000 16668000 0 0 0 58573000 80556000 71479000 0 0 0 42223000 37455000 43930000 0 0 0 100690000 86370000 74079000 0 0 0 3754 1759 3651 71047;71048;71049;71050;71051;71052;71053;71054;71055;71056;71057;71058;71059;71060;71061;71062;71063;71064;71065;71066;71067;71068;71069;71070;71071;71072;71073;71074;71075;71076;71077 43240;43241;43242;43243;43244;43245;43246 43240 4 DRLDNNDMIDQLEAR Unmodified 1816.8374 0.83737471 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 34.698 33.238 3 1.8888E-06 16112 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 106.36 102.52 188110000 19640000 13259000 16694000 0 0 1639700 17561000 13234000 14743000 0 0 0 18269000 12727000 11415000 0 0 0 14408000 17012000 17511000 0 0 0 3755 1649 3652 71078;71079;71080;71081;71082;71083;71084;71085;71086;71087;71088;71089;71090 43247;43248;43249;43250;43251;43252;43253 43247 6 DRLLEIHSNGGEK Unmodified 1466.7478 0.74775506 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 14.697 14.773 2 8.3441E-09 3782 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 170.79 160.42 16038000 0 0 0 0 0 0 0 0 0 1796400 1293100 1825000 0 0 0 5866500 362180 0 0 0 0 0 2900800 1994200 3756 1616 3653 71091;71092;71093;71094;71095;71096;71097 43254;43255;43256 43254 3 DRLNEMGIVLEDGPQGTTWR Unmodified 2286.1063 0.10627935 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 44.712 43.161 3 4.8409E-11 21476 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.45 127.36 497290000 0 48303000 0 0 0 823810 37936000 39847000 38039000 0 0 0 49979000 40289000 47459000 0 0 0 65196000 68065000 61353000 0 0 0 3757 1188 3654 71098;71099;71100;71101;71102;71103;71104;71105;71106;71107;71108 43257;43258;43259;43260;43261;43262;43263;43264 43257 8 DRLPVPAPMAVGAIQTR Unmodified 1790.9825 0.9825228 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.787 37.113 2 4.2386E-24 18090 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 214.53 200.3 114270000 26355000 18278000 20162000 0 0 0 7021000 6908500 7897800 0 0 0 2960400 3143400 4616300 0 0 0 5751100 5295000 5879000 0 0 0 3758 218 3655 71109;71110;71111;71112;71113;71114;71115;71116;71117;71118;71119;71120 43265;43266;43267 43265 3 DRLVPIIADEAR Unmodified 1366.7569 0.75686319 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 1 2 2 2 1 2 2 2 31.539 30.139 2;3 2.3147E-11 10203 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 204.49 189.34 2490100000 0 1916100 2330800 476770000 427720000 454680000 0 0 2444500 33078000 27154000 24271000 0 0 781400 12422000 9815600 8598200 2835500 0 0 330450000 343750000 331100000 3759 939 3656 71121;71122;71123;71124;71125;71126;71127;71128;71129;71130;71131;71132;71133;71134;71135;71136;71137;71138;71139;71140;71141;71142;71143;71144;71145;71146;71147;71148;71149 43268;43269;43270;43271;43272;43273;43274;43275;43276;43277;43278;43279;43280 43280 13 DRLYYVVQMTAQAAER Unmodified 1912.9465 0.94653123 523 P0A9H9 cheZ Protein phosphatase CheZ yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 41.535 39.815 3 0.0093457 14071 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 58.159 54.125 3624100 0 0 0 1280000 1279300 1064800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3760 523 3657 71150;71151;71152 43281 43281 0 DRPEQDFLGIEVHSPGVGACLASAHEEGLSNLR Unmodified 3559.7114 0.71139292 434 P0A8I5 trmB tRNA (guanine-N(7)-)-methyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 1 2 1 42.104 40.201 4;5 1.2471E-33 18838 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 192.09 191.34 637680000 45510000 32038000 38493000 0 0 0 33300000 54043000 44970000 10280000 9310300 9646800 45753000 44604000 35961000 0 0 0 78401000 64279000 72916000 5822000 6786200 5563700 3761 434 3658 71153;71154;71155;71156;71157;71158;71159;71160;71161;71162;71163;71164;71165;71166;71167;71168;71169;71170;71171;71172;71173;71174;71175;71176;71177;71178;71179;71180;71181;71182;71183;71184 43282;43283;43284;43285;43286;43287;43288;43289;43290;43291;43292;43293;43294;43295 43294 14 DRQLTLWQACR Unmodified 1445.7198 0.71976617 80 P03018 uvrD DNA helicase II yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 27.149 27.171 3 0.053618 8618 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 39.341 36.778 7757200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2487500 3013200 2256500 0 0 0 0 0 0 3762 80 3659 71185;71186;71187 43296 43296 1 DRVEDATLVLSVGDEVEAK Unmodified 2044.0324 0.032428925 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 6 2 4 4 3 5 4 3 2 2 2 2 4 3 2 2 2 4 5 5 3 1 3 43.423 41.835 2;3 4.0746E-29 19774 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 237.89 233.18 660440000 86235000 0 17074000 17435000 15359000 13255000 57677000 40341000 38357000 29418000 31012000 24364000 14445000 53683000 14933000 9050100 11115000 10876000 33145000 32050000 63809000 15012000 13324000 18475000 3763 990 3660 71188;71189;71190;71191;71192;71193;71194;71195;71196;71197;71198;71199;71200;71201;71202;71203;71204;71205;71206;71207;71208;71209;71210;71211;71212;71213;71214;71215;71216;71217;71218;71219;71220;71221;71222;71223;71224;71225;71226;71227;71228;71229;71230;71231;71232;71233;71234;71235;71236;71237;71238;71239;71240;71241;71242;71243;71244;71245;71246;71247;71248;71249;71250;71251;71252;71253;71254;71255;71256;71257;71258;71259;71260 43297;43298;43299;43300;43301;43302;43303;43304;43305;43306;43307;43308;43309;43310;43311;43312;43313;43314;43315;43316;43317;43318;43319;43320;43321;43322;43323;43324;43325;43326;43327;43328;43329;43330 43320 28 DRVNSIAEMR Unmodified 1189.5874 0.58735502 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 16.014 16.969 2 0.0061492 5664 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 83.869 73.159 26256000 0 0 0 0 0 0 0 0 0 0 0 0 3561300 3318500 3317800 0 0 0 5644500 5401700 5012600 0 0 0 3764 1507 3661 71261;71262;71263;71264;71265;71266 43331;43332;43333 43331 3 DRWLELGLTDEEK Unmodified 1602.789 0.78895118 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 3 2 2 3 39.429 37.988 2;3 4.5181E-40 13185 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 289.37 257.53 3229300000 0 0 0 877550 0 0 0 0 0 174010000 175820000 137570000 0 0 0 811860000 590310000 673380000 0 0 0 222590000 219770000 223120000 3765 463 3662 71267;71268;71269;71270;71271;71272;71273;71274;71275;71276;71277;71278;71279;71280;71281;71282;71283;71284;71285;71286;71287 43334;43335;43336;43337;43338;43339;43340;43341;43342;43343;43344;43345;43346;43347;43348;43349;43350;43351;43352;43353;43354 43337 21 DRWLELGLTDEEKQNQLEQLAEQYDELK Unmodified 3432.6685 0.66850828 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 2 2 2 1 2 2 52.107 51.229 3;4 4.8906E-137 19164 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 370.13 363.64 1134000000 0 0 0 0 0 0 0 0 0 34366000 42207000 36312000 20475000 0 0 210690000 338190000 329870000 0 0 0 10398000 50783000 60724000 3766 463 3663 71288;71289;71290;71291;71292;71293;71294;71295;71296;71297;71298;71299;71300;71301;71302;71303;71304 43355;43356;43357;43358;43359;43360;43361;43362;43363;43364;43365 43360 10 DSAIVPVYYYVNAR Unmodified 1628.8199 0.81985738 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 1 47.981 46.576 2;3 2.1248E-06 22870 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.24 112.82 986980000 280520000 307490000 256810000 0 0 0 15337000 18575000 20100000 0 0 0 12147000 11044000 10914000 0 0 0 20486000 20136000 13413000 0 0 0 3767 1217 3664 71305;71306;71307;71308;71309;71310;71311;71312;71313;71314;71315;71316;71317;71318;71319;71320;71321;71322;71323;71324;71325;71326 43366;43367;43368;43369;43370;43371;43372;43373;43374;43375;43376;43377;43378;43379;43380 43373 15 DSAQEAGHHVVDK Unmodified 1391.643 0.64295564 900 P0AEZ9 moaB Molybdenum cofactor biosynthesis protein B yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 1 1 1 1 1 1 1 10.485 11.163 2;3 5.1386E-09 2608 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 170.18 170.18 247010000 43625000 42990000 37766000 0 0 0 34781000 28098000 6054200 0 0 0 5302600 5447900 0 0 6425400 6543800 13147000 9668200 7162900 0 0 0 3768 900 3665 71327;71328;71329;71330;71331;71332;71333;71334;71335;71336;71337;71338;71339;71340;71341;71342;71343;71344 43381;43382;43383;43384;43385;43386 43385 6 DSDPEVLLEAIR Unmodified 1355.6933 0.69325988 1380 P31802 narP Nitrate/nitrite response regulator protein NarP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.929 49.804 2 3.2182E-24 24126 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 246.93 228.62 550710000 48636000 36881000 38392000 1787600 1784100 1478100 37805000 44467000 41313000 10328000 8557000 9664400 40987000 42546000 45665000 3286800 2139700 2817200 43183000 46312000 39253000 3429800 0 0 3769 1380 3666 71345;71346;71347;71348;71349;71350;71351;71352;71353;71354;71355;71356;71357;71358;71359;71360;71361;71362;71363;71364;71365;71366 43387;43388;43389;43390;43391;43392;43393;43394;43395;43396;43397;43398;43399;43400;43401 43398 15 DSDRILGILASK Unmodified 1286.7194 0.71941505 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 37.124 35.239 3 0.014665 13834 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 42.209 33.495 21462000 0 0 0 2114100 2389500 2089300 0 0 0 2334500 2900500 2342500 0 0 0 0 0 1665100 0 0 0 1915000 1603600 2107700 3770 899 3667 71367;71368;71369;71370;71371;71372;71373;71374;71375;71376 43402;43403 43403 2 DSDTVVVNYK Unmodified 1138.5506 0.55061839 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 21.67 21.635 2 2.0752E-12 8907 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 214.32 206.38 3699400000 232760000 193730000 171060000 616800 505970 0 283530000 287010000 275490000 0 0 0 337600000 338000000 361050000 0 0 0 394550000 432420000 387830000 1106200 1033700 1082300 3771 1572 3668 71377;71378;71379;71380;71381;71382;71383;71384;71385;71386;71387;71388;71389;71390;71391;71392;71393;71394;71395 43404;43405;43406;43407;43408;43409;43410;43411;43412;43413;43414;43415;43416 43407 12 DSFDDSSANLFK Unmodified 1344.5834 0.58337508 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.339 36.48 2 2.934E-06 14288 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 138.66 134.01 273990000 13685000 14223000 12629000 1451200 1505300 1418600 30188000 31474000 27214000 8372000 6192500 6139900 20837000 22776000 20954000 0 0 0 16618000 17358000 16526000 1446600 1704900 1281400 3772 33 3669 71396;71397;71398;71399;71400;71401;71402;71403;71404;71405;71406;71407;71408;71409;71410;71411;71412;71413;71414;71415;71416 43417;43418;43419;43420;43421;43422 43419 5 DSFLASLTEAER Unmodified 1337.6463 0.64630969 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.558 46.161 2 3.7373E-17 22781 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 218.47 214.01 2465900000 194690000 182680000 179680000 0 0 0 213360000 177060000 197910000 0 0 0 257730000 208320000 204280000 0 0 0 224980000 215610000 209620000 0 0 0 3773 712 3670 71417;71418;71419;71420;71421;71422;71423;71424;71425;71426;71427;71428 43423;43424;43425;43426;43427;43428;43429;43430;43431;43432;43433;43434 43424 6 DSGKPVYAVGENYSQGQYYLASFANK Unmodified 2855.3402 0.34023827 188 P08395 sppA Protease 4 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 44.381 42.08 3 1.4349E-05 17187 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 86.131 83.403 23325000 0 0 0 0 1171400 0 0 0 0 8926100 5180500 8046800 0 0 0 0 0 0 0 0 0 0 0 0 3774 188 3671 71429;71430;71431;71432 43435;43436;43437 43435 3 DSGLGVLITDHNVR Unmodified 1494.7791 0.77905519 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 2 2 2 1 1 1 1 1 1 2 2 2 33.714 31.997 2;3 1.2622E-08 12191 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 154.24 147.11 221250000 0 0 15425000 15667000 18534000 17721000 0 0 0 10282000 16318000 16057000 0 0 0 1687000 0 0 33594000 0 30612000 14638000 16589000 14129000 3775 559 3672 71433;71434;71435;71436;71437;71438;71439;71440;71441;71442;71443;71444;71445;71446;71447;71448;71449;71450;71451 43438;43439;43440;43441;43442;43443 43438 6 DSGQNDLIDEDTR Unmodified 1476.6328 0.63284447 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.871 22.303 2 2.2689E-24 9688 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 244.16 242.84 290630000 34437000 27760000 29234000 0 0 0 24282000 29945000 30004000 0 0 0 17532000 16516000 14678000 0 0 0 24206000 18900000 23136000 0 0 0 3776 839 3673 71452;71453;71454;71455;71456;71457;71458;71459;71460;71461;71462;71463 43444;43445;43446;43447;43448;43449;43450;43451;43452;43453;43454;43455 43444 12 DSGSDMVLVGLLR Unmodified 1360.7021 0.70205043 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.158 52.733 2 1.8491E-17 24891 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 212.03 192.25 885360000 62449000 80660000 67326000 0 0 0 46038000 46162000 0 0 0 0 108350000 110830000 88951000 0 0 0 91299000 93467000 89834000 0 0 0 3777 537 3674 71464;71465;71466;71467;71468;71469;71470;71471;71472;71473;71474 43456;43457;43458;43459;43460;43461;43462;43463;43464;43465;43466 43465 4 DSGTILFQGK Unmodified 1064.5502 0.55022446 593 P0AAG8 mglA Galactose/methyl galactoside import ATP-binding protein MglA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 30.22 28.745 2 0.00036762 9754 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 107.66 90.552 44626000 12398000 13730000 12059000 2084200 2118200 1716300 0 0 0 0 519460 0 0 0 0 0 0 0 0 0 0 0 0 0 3778 593 3675 71475;71476;71477;71478;71479;71480;71481 43467;43468 43467 2 DSGTVLDWK Unmodified 1019.4924 0.49237523 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.091 32.643 2 0.00015756 14818 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 130.27 130.27 1118500000 40765000 45858000 36472000 0 0 0 151410000 142360000 148310000 0 0 0 90243000 84076000 94460000 0 0 0 94253000 94644000 95662000 0 0 0 3779 167 3676 71482;71483;71484;71485;71486;71487;71488;71489;71490;71491;71492;71493 43469;43470;43471;43472;43473;43474;43475;43476;43477;43478;43479 43479 11 DSGVVSELFDER Unmodified 1351.6256 0.62557424 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.9 44.263 2 1.0808E-16 21460 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 204.52 204.52 2015500000 228200000 263370000 221430000 3814600 2263800 2621100 114780000 121530000 98968000 7054500 6157100 7709000 148750000 145620000 135750000 0 0 0 161230000 157180000 172460000 5181200 5587900 5861000 3780 1210 3677 71494;71495;71496;71497;71498;71499;71500;71501;71502;71503;71504;71505;71506;71507;71508;71509;71510;71511;71512;71513;71514;71515;71516;71517 43480;43481;43482;43483;43484;43485;43486;43487;43488;43489 43483 10 DSGVVSELFDERNDAVK Unmodified 1878.8959 0.89593544 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1 1 1 1 1 39.651 37.944 2;3 1.6443E-13 14986 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 160.52 141.62 175340000 0 0 0 0 0 0 3898700 0 0 31324000 31002000 30540000 0 0 0 9378100 8488100 6753700 0 0 0 23909000 29099000 945790 3781 1210 3678 71518;71519;71520;71521;71522;71523;71524;71525;71526;71527;71528;71529 43490;43491;43492;43493;43494;43495;43496;43497;43498 43494 9 DSHLPISGSIK Unmodified 1152.6139 0.61388734 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 2 2 2 2 2 1 2 2 1 1 1 21.125 21.453 2;3 0.0017834 8870 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 76.619 61.95 277600000 11444000 14699000 13663000 0 0 0 33587000 33208000 29631000 0 0 0 17220000 16032000 18531000 0 0 0 31523000 33577000 24482000 0 0 0 3782 51 3679 71530;71531;71532;71533;71534;71535;71536;71537;71538;71539;71540;71541;71542;71543;71544;71545;71546;71547;71548 43499;43500;43501 43499 3 DSHPMAVMCGITGALAAFYHDSLDVNNPR Unmodified 3158.4372 0.43720867 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 1 54.847 53.391 3;4 2.339E-94 26380 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 308.03 305.66 5729100000 1183000000 1200200000 1037000000 3571100 2803400 0 232300000 252360000 210820000 9867200 0 0 170490000 158770000 179730000 0 0 0 369170000 355640000 361640000 0 1739700 0 3783 657 3680 71549;71550;71551;71552;71553;71554;71555;71556;71557;71558;71559;71560;71561;71562;71563;71564;71565;71566;71567;71568;71569;71570;71571;71572;71573;71574;71575;71576 43502;43503;43504;43505;43506;43507;43508;43509;43510;43511;43512;43513;43514;43515;43516;43517;43518;43519;43520;43521;43522 43517 21 DSIEAGDISYK Unmodified 1196.5561 0.55609769 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 25.135 24.095 2 3.1172E-07 10742 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.96 153.84 322560000 32698000 45080000 0 0 0 0 50760000 54140000 46087000 0 0 0 19577000 0 21033000 0 0 0 30730000 0 22458000 0 0 0 3784 154 3681 71577;71578;71579;71580;71581;71582;71583;71584;71585 43523;43524;43525;43526;43527;43528;43529;43530 43527 8 DSILEAIDAGIK Unmodified 1243.666 0.66598249 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.455 50.237 2 8.5421E-06 24671 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 131.12 116.82 5528400000 645400000 632670000 618980000 2359100 3812200 2666000 257940000 283610000 270480000 0 2825000 3187600 291020000 300730000 324300000 1329300 0 0 650290000 604240000 628880000 0 2124700 1577300 3785 1013 3682 71586;71587;71588;71589;71590;71591;71592;71593;71594;71595;71596;71597;71598;71599;71600;71601;71602;71603;71604;71605 43531;43532;43533;43534;43535;43536;43537;43538;43539;43540;43541;43542 43533 12 DSIPVPDYEPEADGIPNTFVPGR Unmodified 2484.1809 0.18088408 1939 P77756 queC 7-cyano-7-deazaguanine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 52.199 50.943 2;3 2.2011E-21 25032 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 206.63 196.27 683800000 41584000 41997000 41102000 0 0 0 64232000 68042000 57398000 0 0 0 56623000 59464000 65079000 0 0 0 62389000 57037000 66921000 1928800 0 0 3786 1939 3683 71606;71607;71608;71609;71610;71611;71612;71613;71614;71615;71616;71617;71618;71619;71620;71621;71622;71623;71624;71625;71626;71627;71628;71629;71630 43543;43544;43545;43546;43547;43548;43549;43550;43551;43552;43553;43554;43555;43556 43545 14 DSLAIFGNDYPTEDGTGVR Unmodified 2025.928 0.92796385 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 47.166 45.759 2 1.8133E-29 22321 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 216.84 204.08 124070000 35211000 32044000 30200000 0 0 0 7122100 5547300 5215900 0 0 0 1967400 3522900 3238300 0 0 0 0 0 0 0 0 0 3787 202 3684 71631;71632;71633;71634;71635;71636;71637;71638;71639 43557;43558;43559 43558 3 DSLFWGEQTIER Unmodified 1479.6994 0.69940789 622 P0AB14 yccJ Uncharacterized protein YccJ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 45.402 43.887 2 2.6827E-05 21631 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 117.52 102.64 149010000 17077000 15374000 15609000 0 0 0 33509000 26440000 27647000 0 0 0 6869300 0 0 0 0 0 0 6484800 0 0 0 0 3788 622 3685 71640;71641;71642;71643;71644;71645;71646;71647 43560;43561;43562 43562 3 DSLGFQPNLR Unmodified 1145.5829 0.58292157 1704 P65367 yqcA Uncharacterized protein YqcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 33.199 31.689 2 0.00032704 14519 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 110.31 101.97 510460000 59062000 45446000 46600000 0 0 0 46651000 46550000 47638000 0 822140 0 34705000 38156000 32407000 0 0 0 29441000 39980000 43001000 0 0 0 3789 1704 3686 71648;71649;71650;71651;71652;71653;71654;71655;71656;71657;71658;71659;71660 43563;43564;43565;43566;43567;43568;43569 43567 7 DSLKDEVLHSLLPR Unmodified 1620.8835 0.88352026 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 43.632 41.987 3;4 5.0043E-11 20869 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 158.52 156.61 785090000 54191000 53460000 46182000 0 0 0 49510000 54110000 53132000 3835900 4205200 1951800 60664000 58700000 59953000 4885800 0 10296000 82672000 75497000 76709000 12317000 11654000 11160000 3790 1445 3687 71661;71662;71663;71664;71665;71666;71667;71668;71669;71670;71671;71672;71673;71674;71675;71676;71677;71678;71679;71680;71681;71682;71683;71684;71685;71686;71687;71688;71689;71690;71691;71692;71693;71694;71695;71696;71697 43570;43571;43572;43573;43574;43575;43576;43577;43578;43579;43580;43581;43582;43583;43584;43585;43586;43587;43588;43589;43590;43591;43592;43593;43594;43595;43596;43597;43598 43574 29 DSLLEPTETVVEMVAELHR Unmodified 2167.0831 0.083084287 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 1 2 2 2 2 2 2 2 55.145 53.687 2;3 2.1809E-37 21542 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 196.66 192.94 1987800000 125380000 113510000 98295000 0 0 0 77493000 73903000 67559000 12001000 6695500 7268600 106740000 105290000 111730000 0 0 0 131170000 130890000 133430000 243370000 230350000 212760000 3791 1433 3688 71698;71699;71700;71701;71702;71703;71704;71705;71706;71707;71708;71709;71710;71711;71712;71713;71714;71715;71716;71717;71718;71719;71720;71721;71722;71723;71724;71725;71726 43599;43600;43601;43602;43603;43604;43605;43606;43607;43608;43609;43610;43611;43612;43613;43614;43615;43616;43617 43604 19 DSLMLQLYPDAELR Unmodified 1662.8287 0.8287075 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.844 51.644 2 3.19E-11 20350 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 209.8 200.61 1091500000 113600000 106340000 97349000 2025000 1587700 2845300 68919000 80197000 75925000 2358100 1942500 0 82627000 65484000 65707000 21415000 14923000 21916000 92326000 83252000 86068000 0 2344800 2306000 3792 1214 3689 71727;71728;71729;71730;71731;71732;71733;71734;71735;71736;71737;71738;71739;71740;71741;71742;71743;71744;71745;71746;71747;71748 43618;43619;43620;43621;43622;43623;43624;43625;43626;43627 43618 9 DSLPEGVYNDQFK Unmodified 1510.694 0.69398816 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.469 33.021 2 4.5573E-09 15670 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 171.33 166.99 1857200000 155790000 131390000 114120000 0 0 0 281600000 311790000 280720000 0 0 0 103430000 93913000 85569000 0 0 0 97860000 103380000 97628000 0 0 0 3793 449 3690 71749;71750;71751;71752;71753;71754;71755;71756;71757;71758;71759;71760 43628;43629;43630;43631;43632;43633;43634;43635;43636;43637;43638;43639 43632 12 DSLPEGVYNDQFKK Unmodified 1638.789 0.78895118 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 26.483 25.017 2 6.2934E-05 11652 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.596 76.02 25740000 0 3621300 0 0 0 0 7181300 7175900 7761900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3794 449 3691 71761;71762;71763;71764 43640;43641;43642 43641 2 DSLSDKPAK Unmodified 959.49238 0.49237523 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 9.7512 10.606 2 7.8117E-08 2531 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 194.29 121.26 1939900000 0 0 0 0 0 0 27031000 26669000 27649000 0 0 0 338980000 326090000 284390000 0 0 0 305970000 294150000 308970000 0 0 0 3795 38 3692 71765;71766;71767;71768;71769;71770;71771;71772;71773 43643;43644;43645;43646;43647;43648;43649;43650;43651;43652 43648 9 DSLSLLAYVK Unmodified 1107.6176 0.61757574 580 P0AA95 yacC Uncharacterized protein YacC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 49.262 47.933 2 0.1335 23550 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 38.55 27.039 31873000 4828000 5049000 3419300 301530 0 335580 0 3091300 0 0 0 0 2675000 2742400 2683100 0 0 0 3002000 3745700 0 0 0 0 3796 580 3693 71774;71775;71776;71777;71778;71779;71780;71781;71782;71783;71784 43653 43653 1 DSLVVSIAAGVTLDQLAR Unmodified 1827.0102 0.010177341 535 P0A9L8 proC Pyrroline-5-carboxylate reductase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 55.345 53.871 2;3 1.4252E-13 26861 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 191.48 177.82 193780000 29754000 29630000 32230000 0 0 0 12445000 9764700 12401000 0 0 0 9132100 12029000 8761700 0 0 0 10382000 12172000 15077000 0 0 0 3797 535 3694 71785;71786;71787;71788;71789;71790;71791;71792;71793;71794;71795;71796;71797;71798;71799;71800;71801;71802;71803;71804;71805;71806;71807;71808 43654;43655 43654 2 DSLYTAGR Unmodified 881.4243 0.42429566 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 15.687 16.502 1;2 6.6235E-07 5704 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 198.39 178.05 1378300000 38815000 41010000 37465000 0 0 0 202000000 204400000 181220000 0 0 0 140820000 109320000 122840000 0 0 0 101760000 103890000 94776000 0 0 0 3798 1806 3695 71809;71810;71811;71812;71813;71814;71815;71816;71817;71818;71819;71820;71821;71822;71823;71824;71825;71826;71827;71828;71829;71830;71831;71832 43656;43657;43658;43659;43660;43661;43662;43663;43664;43665;43666;43667;43668 43663 13 DSMDNSK Unmodified 795.30688 0.30688264 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.0349 5.8841 2 0.0020271 1360 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.57 119.57 182350000 23680000 24456000 21459000 0 0 0 3237500 3694600 2102900 0 0 0 20083000 16151000 15885000 0 0 0 17373000 15930000 18298000 0 0 0 3799 561 3696 71833;71834;71835;71836;71837;71838;71839;71840;71841;71842;71843;71844 43669;43670;43671;43672;43673;43674;43675;43676;43677;43678 43673 10 DSMGQSLSGGER Unmodified 1222.5248 0.52481434 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.523 16.165 2 1.0902E-16 5647 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 204.34 199.37 225730000 11356000 10612000 12563000 3301600 3507700 3931800 13302000 19250000 16135000 7228200 7135300 8381600 15072000 12188000 12950000 0 0 0 18153000 19234000 19790000 4219400 3741700 3681700 3800 559 3697 71845;71846;71847;71848;71849;71850;71851;71852;71853;71854;71855;71856;71857;71858;71859;71860;71861;71862;71863;71864;71865 43679;43680;43681;43682;43683;43684;43685;43686;43687;43688;43689;43690;43691;43692;43693;43694;43695;43696;43697 43682 19 DSMSYAEQDVK Unmodified 1271.534 0.53398204 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.502 19.82 2 3.7204E-08 7748 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 177.7 174.11 664220000 33241000 35485000 31030000 1313300 1187100 1327400 59135000 53096000 47445000 5094200 4343100 4764000 53798000 67430000 68348000 0 0 0 65196000 65451000 61523000 1931900 1810200 1268100 3801 294 3698 71866;71867;71868;71869;71870;71871;71872;71873;71874;71875;71876;71877;71878;71879;71880;71881;71882;71883;71884;71885;71886 43698;43699;43700;43701;43702;43703;43704;43705;43706;43707;43708;43709 43700 12 DSPINNLNDLLAK Unmodified 1425.7464 0.74635808 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 48.347 46.996 2 1.8007E-05 22835 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.81 113.5 698080000 0 0 0 0 0 0 50910000 57352000 46701000 0 0 0 54539000 47257000 54933000 0 0 0 127020000 133390000 125970000 0 0 0 3802 1124 3699 71887;71888;71889;71890;71891;71892;71893;71894;71895 43710;43711;43712;43713;43714;43715;43716;43717 43712 8 DSQEYVSK Unmodified 954.42944 0.42944062 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.48 12.309 2 8.2891E-05 3235 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 164.53 146.97 8796700000 617630000 496460000 497380000 2577300 3067900 3241600 1029600000 1053800000 998830000 0 0 0 717160000 673480000 632450000 0 0 2544700 701900000 690410000 676190000 0 0 0 3803 634 3700 71896;71897;71898;71899;71900;71901;71902;71903;71904;71905;71906;71907;71908;71909;71910;71911 43718;43719;43720;43721;43722;43723;43724;43725;43726;43727 43723 7 DSQEYVSKK Unmodified 1082.5244 0.52440364 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 10.259 10.999 2 0.0010895 2464 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 99.136 92.311 23393000 0 4825200 0 0 0 0 3682700 7222100 7663500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3804 634 3701 71912;71913;71914;71915 43728 43728 1 DSQIGAWVSK Unmodified 1089.5455 0.54547343 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.965 28.409 2 0.00029922 13213 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.36 124.9 328740000 32021000 22971000 23213000 1402600 1239800 0 28255000 27723000 24206000 4450800 5531500 4830100 18796000 16342000 18296000 0 0 0 26927000 29458000 26699000 5589100 4801100 5983900 3805 944 3702 71916;71917;71918;71919;71920;71921;71922;71923;71924;71925;71926;71927;71928;71929;71930;71931;71932;71933;71934;71935 43729;43730;43731;43732;43733;43734;43735;43736;43737;43738;43739;43740;43741;43742 43738 14 DSQSSDVIIIGGGATGAGIAR Unmodified 1943.9912 0.99123281 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 1 1 2 40.756 38.939 2;3 3.1237E-34 19343 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 264.92 258.19 167520000 0 0 0 0 0 0 29837000 25862000 21533000 2195700 0 0 19943000 19091000 18108000 0 0 0 7359500 8740200 14847000 0 0 0 3806 506 3703 71936;71937;71938;71939;71940;71941;71942;71943;71944;71945;71946;71947;71948;71949;71950;71951;71952 43743;43744;43745;43746;43747;43748;43749 43743 7 DSSFAMLLEAQR Unmodified 1366.6551 0.65510023 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.867 47.536 2 1.2006E-30 23130 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 254.83 250.22 359020000 29760000 28432000 22596000 0 0 0 34968000 32641000 31878000 0 0 0 29178000 27578000 22200000 0 0 0 37421000 32528000 29836000 0 0 0 3807 90 3704 71953;71954;71955;71956;71957;71958;71959;71960;71961;71962;71963;71964 43750;43751;43752;43753;43754;43755;43756;43757;43758;43759;43760;43761 43753 12 DSSGKPLY Unmodified 865.41815 0.41814765 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 16.075 16.799 2 0.0021205 5457 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.61 110.61 1306600000 7265300 7236200 0 0 0 0 160520000 163940000 160050000 0 0 0 152250000 121810000 114570000 0 0 0 139870000 136620000 138660000 1783100 1978600 0 3808 994 3705 71965;71966;71967;71968;71969;71970;71971;71972;71973;71974;71975;71976;71977 43762;43763;43764;43765;43766;43767;43768 43768 7 DSSLRVPNGVSGTVIDVQVFTR Unmodified 2345.2339 0.2339227 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 3 3 3 4 3 3 3 48.425 47.328 2;3;4 2.3321E-52 18931 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 284.72 263.92 8816500000 0 0 0 5629900 3621200 7048500 0 0 0 168920000 172570000 264360000 0 0 0 2097200000 2000600000 2056400000 0 0 0 631820000 706140000 702160000 3809 463 3706 71978;71979;71980;71981;71982;71983;71984;71985;71986;71987;71988;71989;71990;71991;71992;71993;71994;71995;71996;71997;71998;71999;72000;72001;72002;72003;72004;72005;72006;72007;72008 43769;43770;43771;43772;43773;43774;43775;43776;43777;43778;43779;43780;43781;43782;43783;43784;43785;43786;43787;43788;43789;43790;43791;43792;43793;43794;43795;43796;43797;43798;43799;43800;43801;43802;43803;43804;43805;43806;43807;43808;43809;43810;43811;43812;43813;43814;43815;43816 43794 48 DSSVMLHLAR Unmodified 1127.5757 0.5757277 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.074 24.085 3 0.00031238 11057 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 83.783 74.002 817510000 62470000 53997000 51756000 0 0 2238900 51359000 46003000 47655000 0 0 0 53646000 53489000 62496000 0 0 0 108020000 105140000 119230000 0 0 0 3810 1169 3707 72009;72010;72011;72012;72013;72014;72015;72016;72017;72018;72019;72020;72021;72022 43817;43818;43819;43820;43821;43822;43823;43824;43825;43826;43827;43828;43829 43817 13 DSTAELYHFIGK Unmodified 1379.6721 0.67213051 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 37.393 35.722 2;3 4.3273E-08 17613 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 157.66 147.98 1564600000 130120000 132670000 106770000 901070 734440 641120 186320000 178420000 165480000 1608600 2195000 2064600 100490000 88237000 77836000 1263100 2367800 0 184000000 64825000 136370000 1262000 0 0 3811 60 3708 72023;72024;72025;72026;72027;72028;72029;72030;72031;72032;72033;72034;72035;72036;72037;72038;72039;72040;72041;72042;72043;72044;72045;72046;72047;72048;72049;72050;72051;72052;72053;72054;72055 43830;43831;43832;43833;43834;43835;43836;43837;43838;43839;43840;43841;43842;43843;43844;43845;43846;43847;43848 43832 19 DSTGICFIGER Unmodified 1253.571 0.57103625 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.626 34.066 2 8.1656E-05 16427 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 123.35 115.13 443990000 46664000 42923000 49472000 0 0 527500 24618000 29719000 24598000 0 0 0 30809000 33698000 25357000 0 0 0 48195000 43235000 44178000 0 0 0 3812 1272 3709 72056;72057;72058;72059;72060;72061;72062;72063;72064;72065;72066;72067;72068 43849;43850;43851;43852;43853;43854;43855;43856;43857;43858;43859 43854 9 DSTMIIISHDR Unmodified 1286.6289 0.62888548 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.084 23.212 2 1.5688E-05 10162 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 141.02 132.26 258690000 24642000 16370000 17073000 532450 464340 510340 26933000 21140000 18631000 0 0 1083600 22148000 22706000 18817000 540680 0 0 18366000 22458000 26278000 0 0 0 3813 558 3710 72069;72070;72071;72072;72073;72074;72075;72076;72077;72078;72079;72080;72081;72082;72083;72084;72085 43860;43861;43862;43863;43864;43865;43866;43867;43868;43869;43870 43864 8 DSVGAVVMGPYADLAEGMK Unmodified 1908.8961 0.89613514 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.38 51.234 2 1.9145E-29 18515 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 216.34 211.19 4651600000 172460000 153440000 157170000 26002000 33376000 31546000 293480000 312550000 301740000 97839000 91801000 110850000 343560000 344520000 374440000 32580000 14560000 23068000 474590000 504410000 486570000 93469000 83205000 94361000 3814 645 3711 72086;72087;72088;72089;72090;72091;72092;72093;72094;72095;72096;72097;72098;72099;72100;72101;72102;72103;72104;72105;72106;72107;72108;72109;72110 43871;43872;43873;43874;43875;43876;43877;43878;43879;43880;43881;43882;43883;43884;43885;43886;43887;43888;43889;43890;43891;43892;43893;43894;43895 43887 25 DSVIGLSK Unmodified 817.45453 0.45453316 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.931 21.781 2 0.00087898 9057 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.29 95.319 746220000 0 118670000 0 2944000 3458600 2745500 83928000 80463000 80060000 8562000 7818200 3786300 0 61299000 55260000 0 0 0 113240000 115710000 1102300 0 2862000 4315500 3815 279 3712 72111;72112;72113;72114;72115;72116;72117;72118;72119;72120;72121;72122;72123;72124;72125;72126;72127 43896;43897;43898;43899;43900;43901;43902;43903;43904;43905;43906;43907;43908;43909 43900 13 DSVPMTLSEDEIAR Unmodified 1561.7294 0.72938739 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.514 35.821 2 8.1373E-06 16636 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 109.16 105.07 226210000 0 23706000 22740000 0 0 0 21891000 18854000 21430000 0 0 0 16043000 15316000 17872000 0 0 0 22369000 22234000 23754000 0 0 0 3816 248 3713 72128;72129;72130;72131;72132;72133;72134;72135;72136;72137;72138;72139 43910;43911;43912;43913 43913 4 DSVSYGVVK Unmodified 952.48656 0.48656157 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.449 19.815 2 0.0024586 7835 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.064 73.295 15329000000 929390000 861020000 806400000 3215000 4057400 4184800 2153400000 2049700000 1880800000 3138000 3496100 3093100 1023300000 1024000000 981750000 0 0 0 1303400000 1157700000 1136600000 0 0 0 3817 634 3714 72140;72141;72142;72143;72144;72145;72146;72147;72148;72149;72150;72151;72152;72153;72154;72155;72156;72157 43914;43915;43916;43917;43918;43919;43920;43921 43917 8 DSVTLVHK Unmodified 897.49198 0.4919813 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.547 13.379 1;2 0.0014295 3664 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 108.92 100.69 10204000000 1313700000 1412500000 1408300000 0 0 0 547780000 523230000 471730000 0 0 0 621210000 614140000 554120000 0 0 0 940200000 925350000 871400000 0 0 0 3818 179 3715 72158;72159;72160;72161;72162;72163;72164;72165;72166;72167;72168;72169;72170;72171;72172;72173;72174;72175;72176;72177;72178;72179;72180;72181 43922;43923;43924;43925;43926;43927;43928;43929;43930;43931;43932 43932 5 DSWHVAHIFR Unmodified 1266.6258 0.62578944 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 2 2 2 2 2 2 1 2 26.114 24.945 2;3 0.00024538 11194 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.231 60.469 439790000 3926300 24395000 24173000 0 0 0 71466000 62699000 65619000 0 0 0 32618000 33129000 29449000 0 0 0 30482000 31695000 30134000 0 0 0 3819 1588 3716 72182;72183;72184;72185;72186;72187;72188;72189;72190;72191;72192;72193;72194;72195;72196;72197;72198;72199;72200;72201;72202;72203 43933;43934;43935;43936;43937 43934 5 DSYTMLEILR Unmodified 1239.6169 0.61692381 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 51.181 49.91 2 4.5348E-05 24614 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.1 110.36 315730000 18979000 16690000 16954000 0 0 0 22097000 22013000 21187000 0 0 0 28489000 26169000 24832000 0 0 0 40052000 39517000 37553000 1194900 0 0 3820 1812 3717 72204;72205;72206;72207;72208;72209;72210;72211;72212;72213;72214;72215;72216 43938;43939;43940;43941 43939 3 DTAFLMEQLELREELDEIEQAKDEAR Unmodified 3120.4921 0.49212381 261 P0A6L9 hscB Co-chaperone protein HscB yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.811 50.656 4 9.457E-41 24674 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 206.09 204.14 280420000 22386000 22195000 18985000 0 1121100 1334200 19001000 17391000 15926000 0 0 0 15873000 17668000 19267000 0 0 1139400 39963000 40775000 27397000 0 0 0 3821 261 3718 72217;72218;72219;72220;72221;72222;72223;72224;72225;72226;72227;72228;72229;72230;72231 43942;43943;43944;43945;43946;43947;43948 43943 7 DTAIMSYSTK Unmodified 1115.5169 0.51687542 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.831 22.302 2 0.00044499 9547 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 102.62 100.56 726770000 63295000 53398000 52137000 0 0 0 63581000 58693000 64253000 0 0 0 63169000 53428000 47459000 0 0 0 72262000 73722000 61374000 0 0 0 3822 715 3719 72232;72233;72234;72235;72236;72237;72238;72239;72240;72241;72242;72243 43949;43950;43951;43952;43953;43954;43955;43956;43957 43952 7 DTDVPYSNIVALNEHAAVLHYTK Unmodified 2569.2813 0.28126682 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 40.946 39.277 3;4 2.9755E-10 18332 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 124.86 124.83 2669000000 306070000 264660000 281560000 0 819160 0 245660000 255700000 246040000 0 0 0 150450000 128820000 134760000 0 0 0 210210000 227190000 217060000 0 0 0 3823 1170 3720 72244;72245;72246;72247;72248;72249;72250;72251;72252;72253;72254;72255;72256;72257;72258;72259;72260;72261;72262;72263;72264;72265;72266;72267;72268 43958;43959;43960;43961;43962;43963;43964;43965;43966;43967;43968;43969;43970;43971;43972;43973;43974;43975;43976;43977;43978;43979;43980;43981 43979 24 DTEELHPR Unmodified 995.46722 0.46722311 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.196 12.029 2 4.1906E-12 3041 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 181.49 143.84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3824 58 3721 72269;72270;72271;72272;72273;72274;72275;72276;72277;72278;72279;72280 43982;43983;43984;43985;43986;43987;43988;43989;43990;43991;43992;43993 43984 12 DTETDSR Unmodified 822.33554 0.33554023 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 4.835 5.6842 2 0.026174 1312 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 70.912 59.617 154080000 19172000 21439000 19159000 0 0 0 508280 754460 995740 0 0 0 9213500 7858400 10002000 0 0 0 22818000 21493000 20666000 0 0 0 3825 150 3722 72281;72282;72283;72284;72285;72286;72287;72288;72289;72290;72291;72292 43994;43995 43995 1 DTETDSRLDGLSDAFSVFR Unmodified 2129.9865 0.98654137 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 52.112 50.702 2;3 7.6468E-30 20144 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 184.03 183.58 220860000 0 0 0 31734000 29273000 29878000 0 0 0 18898000 14272000 16176000 0 0 0 0 0 0 0 0 0 26304000 30396000 23932000 3826 150 3723 72293;72294;72295;72296;72297;72298;72299;72300;72301;72302;72303;72304;72305;72306;72307;72308;72309 43996;43997;43998;43999;44000;44001;44002;44003;44004;44005 43999 9 DTEVVER Unmodified 846.40831 0.40831125 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 12.078 12.53 2 0.00132 2798 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 132.09 65.059 175200000 0 13875000 13955000 0 0 0 0 0 39331000 0 0 0 0 0 0 54990000 0 53047000 0 0 0 0 0 0 3827 1247 3724 72310;72311;72312;72313;72314 44006 44006 1 DTFLMIDK Unmodified 981.48412 0.48411873 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.163 37.318 2 0.010487 14650 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 78.324 71.173 350330000 18670000 14946000 14918000 0 2345200 2160300 43500000 41950000 43880000 12968000 14818000 9156800 16725000 15847000 17486000 0 0 0 27016000 24180000 25972000 0 0 3793500 3828 122 3725 72315;72316;72317;72318;72319;72320;72321;72322;72323;72324;72325;72326;72327;72328;72329;72330;72331;72332;72333;72334 44007;44008;44009;44010;44011;44012;44013;44014;44015;44016;44017;44018;44019 44008 13 DTFWWADK Unmodified 1067.4712 0.47124585 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 45.868 44.377 1;2 0.00096397 20660 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 115.69 115.69 4229900000 516610000 645600000 506910000 0 0 0 262790000 243300000 241750000 0 0 757350 299990000 298550000 280520000 0 0 0 293240000 319020000 320880000 0 0 0 3829 1195 3726 72335;72336;72337;72338;72339;72340;72341;72342;72343;72344;72345;72346;72347;72348;72349;72350;72351;72352;72353;72354;72355;72356;72357;72358;72359 44020;44021;44022;44023;44024;44025;44026;44027;44028;44029;44030;44031;44032 44032 12 DTGDAYSFNWSMR Unmodified 1548.6303 0.63034205 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.501 44.061 2 7.7085E-32 21795 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 267.29 267.29 218300000 19258000 16904000 17218000 0 0 0 23856000 23444000 19868000 0 0 0 17315000 19209000 16995000 0 0 0 13732000 13728000 16778000 0 0 0 3830 801 3727 72360;72361;72362;72363;72364;72365;72366;72367;72368;72369;72370;72371 44033;44034;44035;44036;44037;44038;44039;44040;44041;44042;44043 44033 11 DTGHVAIITQLHGNK Unmodified 1602.8478 0.84780346 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 2 2 2 2 2 2 2 2 2 19.502 19.977 2;3 4.9751E-10 7933 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.2 117.31 421560000 34244000 37998000 25179000 0 0 348420 50016000 47571000 52534000 0 0 0 35436000 31226000 22271000 0 0 0 28150000 27712000 28876000 0 0 0 3831 880 3728 72372;72373;72374;72375;72376;72377;72378;72379;72380;72381;72382;72383;72384;72385;72386;72387;72388;72389;72390;72391;72392;72393;72394;72395 44044;44045;44046;44047;44048;44049;44050;44051;44052;44053;44054;44055;44056 44046 13 DTGPNTGGMGAYSPAPVVTDDVHQR Unmodified 2541.1554 0.15541438 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.242 29.93 3 3.3826E-23 13945 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 179.06 178.85 331330000 98632000 92860000 67844000 0 0 0 5351900 0 4347700 0 0 0 9169000 9748000 6680100 0 0 0 13450000 11602000 11650000 0 0 0 3832 1112 3729 72396;72397;72398;72399;72400;72401;72402;72403;72404;72405;72406 44057;44058;44059 44059 3 DTGTIEIIAPLSGEIVNIEDVPDVVFAEK Unmodified 3082.5962 0.59617818 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 1 1 1 2 1 1 55.836 54.346 2;3 6.6994E-16 26978 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 195.97 186.69 500080000 28136000 94010000 22988000 0 0 0 31209000 5960600 74235000 0 0 0 31448000 69188000 29207000 0 0 0 46589000 32252000 34862000 0 0 0 3833 1741 3730 72407;72408;72409;72410;72411;72412;72413;72414;72415;72416;72417;72418;72419;72420;72421;72422 44060;44061;44062;44063;44064;44065;44066;44067;44068;44069;44070;44071;44072 44068 13 DTIDSVAHLR Unmodified 1125.5778 0.57783619 1761 P75682 yagE Probable 2-keto-3-deoxy-galactonate aldolase YagE yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 23.133 22.629 3 0.01941 9720 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 52.725 48.871 81522000 28219000 29092000 24211000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3834 1761 3731 72423;72424;72425 44073 44073 1 DTIGDIIILPR Unmodified 1224.7078 0.70778773 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 52.097 50.826 2 5.4444E-06 24592 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 177.36 169.75 101980000 3965700 4194000 4529600 0 0 0 12562000 11821000 11372000 0 820160 0 7355900 7152200 7156500 0 0 0 10202000 10601000 10243000 0 0 0 3835 324 3732 72426;72427;72428;72429;72430;72431;72432;72433;72434;72435;72436;72437;72438 44074;44075;44076;44077;44078;44079;44080 44079 7 DTINAPAEELGPSQLAQR Unmodified 1908.9541 0.95411902 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 36.127 34.57 2;3 4.9287E-45 16594 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 333.44 331.3 2469400000 202610000 199770000 161520000 0 0 0 203360000 208680000 188720000 0 0 0 232770000 237190000 222910000 0 0 0 189800000 208860000 213150000 0 0 0 3836 1456 3733 72439;72440;72441;72442;72443;72444;72445;72446;72447;72448;72449;72450;72451;72452;72453;72454;72455;72456;72457;72458;72459;72460;72461;72462 44081;44082;44083;44084;44085;44086;44087;44088;44089;44090;44091;44092;44093;44094;44095;44096;44097;44098;44099;44100 44093 20 DTLFSAPIAR Unmodified 1089.5819 0.58185893 1847 P76290 cmoA tRNA (cmo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.275 36.333 2 5.123E-05 16789 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 116.73 102.06 158370000 0 0 23517000 0 0 222080 39768000 36044000 32494000 0 0 742500 19697000 0 0 0 0 0 0 0 0 2161200 1673600 2049800 3837 1847 3734 72463;72464;72465;72466;72467;72468;72469;72470;72471;72472;72473;72474;72475;72476;72477;72478 44101;44102;44103;44104;44105;44106;44107;44108;44109;44110;44111 44111 11 DTLHLEGK Unmodified 911.47125 0.47124585 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.165 14.764 2 0.00020659 4625 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 152.47 94.303 4770500000 599210000 549640000 445860000 20849000 19885000 19411000 313500000 264810000 261360000 40712000 38563000 35395000 329950000 271860000 282630000 52166000 18499000 18954000 376620000 373480000 372190000 21194000 22511000 21290000 3838 990 3735 72479;72480;72481;72482;72483;72484;72485;72486;72487;72488;72489;72490;72491;72492;72493;72494;72495;72496;72497;72498;72499;72500;72501;72502 44112;44113;44114;44115;44116;44117;44118;44119;44120;44121;44122;44123;44124;44125;44126;44127;44128;44129 44123 18 DTLHLEGKELEFK Unmodified 1557.8039 0.80387296 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 1 2 2 1 2 2 28.375 27.031 3;4 0.00057273 9125 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 66.533 65.901 95563000 0 0 0 9417800 9846000 8883100 0 0 0 7784100 4640000 6676500 0 0 0 4371100 12798000 10742000 0 0 0 4067200 7875700 8461300 3839 990 3736 72503;72504;72505;72506;72507;72508;72509;72510;72511;72512;72513;72514;72515;72516;72517;72518;72519;72520;72521;72522;72523;72524 44130;44131;44132;44133;44134;44135;44136;44137 44135 8 DTMLCTCLVNEHDVR Unmodified 1861.8121 0.81208793 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 1 1 1 1 2 2 2 2 2 2 1 1 1 31.254 29.75 2;3 3.7074E-06 14256 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 96.673 92.705 381730000 40111000 33345000 28955000 1775800 1859700 1668900 16449000 26608000 24679000 2688700 4068400 3318400 25019000 22890000 22622000 0 0 0 43463000 34717000 39143000 2627300 3032700 2685600 3840 303 3737 72525;72526;72527;72528;72529;72530;72531;72532;72533;72534;72535;72536;72537;72538;72539;72540;72541;72542;72543;72544;72545;72546;72547;72548;72549;72550;72551;72552;72553;72554;72555;72556 44138;44139;44140;44141;44142;44143;44144;44145;44146;44147;44148 44140 5 DTNGNLYAADVNETTGAVSVK Unmodified 2138.0128 0.012756116 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 34.746 33.507 2 8.6618E-15 16071 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 135.72 132.14 36140000 12750000 14986000 8404600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3841 96 3738 72557;72558;72559 44149 44149 1 DTNVWEGDYQMVGR Unmodified 1668.7202 0.72021968 1372 P31554 lptD LPS-assembly protein LptD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.393 38.56 2 0.058227 19041 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 43.419 41.919 56001000 4231800 0 4091500 579900 547790 0 3403100 3369100 3695800 1181000 1807300 0 3638600 4303800 3777400 0 0 0 7435600 6419400 7518800 0 0 0 3842 1372 3739 72560;72561;72562;72563;72564;72565;72566;72567;72568;72569;72570;72571;72572;72573;72574 44150 44150 0 DTPELVSFLHLPVQSGSDR Unmodified 2096.0538 0.05383307 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 52.551 51.38 2;3 2.7242E-38 24939 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 278.39 272.9 1522000000 122560000 148470000 120930000 4665300 8465400 5659400 86941000 90562000 79474000 8531200 7133400 8590500 98158000 97284000 103130000 10709000 10679000 11085000 176380000 163120000 142390000 4586400 4939800 7597600 3843 862 3740 72575;72576;72577;72578;72579;72580;72581;72582;72583;72584;72585;72586;72587;72588;72589;72590;72591;72592;72593;72594;72595;72596;72597;72598;72599;72600;72601;72602;72603;72604;72605;72606;72607;72608;72609;72610 44151;44152;44153;44154;44155;44156;44157;44158;44159;44160;44161;44162;44163;44164;44165;44166;44167;44168;44169;44170;44171;44172;44173 44167 23 DTPINWTTK Unmodified 1074.5346 0.53457439 617 P0AAX8 ybiS Probable L,D-transpeptidase YbiS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 2 1 2 1 28.031 26.878 2 0.00013676 12356 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.08 126.6 762680000 68575000 71111000 70619000 0 0 0 55631000 45434000 49914000 0 0 0 60502000 62759000 57505000 0 0 0 75266000 75399000 69967000 0 0 0 3844 617 3741 72611;72612;72613;72614;72615;72616;72617;72618;72619;72620;72621;72622;72623;72624;72625 44174;44175;44176;44177;44178;44179;44180;44181;44182;44183;44184 44177 11 DTPQSCGLPPIEEYK Unmodified 1732.7978 0.7978013 178 P08194 glpT Glycerol-3-phosphate transporter yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.38 33.118 3 0.16863 15630 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 6.0316 2.396 492250000 21552000 21437000 19223000 0 0 579840 72413000 78357000 73755000 0 0 0 14086000 16266000 12840000 1811700 2093900 0 75105000 79925000 2802800 0 0 0 3845 178 3742 72626;72627;72628;72629;72630;72631;72632;72633;72634;72635;72636;72637;72638;72639;72640 44185 44185 1 DTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDK Unmodified 4045.8799 0.87989803 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 55.345 53.832 4 2.1301E-14 26841 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.4 127.37 273990000 0 0 0 0 0 0 54494000 48534000 53051000 0 0 0 2961500 0 26573000 0 0 0 28485000 29939000 29953000 0 0 0 3846 256 3743 72641;72642;72643;72644;72645;72646;72647;72648 44186;44187 44186 2 DTQPTLSFQR Unmodified 1191.5884 0.58840088 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS 1 1 27.898 26.221 2 0.00015355 12261 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.7 86.658 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3847 658 3744 72649;72650 44188;44189 44189 2 DTSKQTVYAFLGDGEMDEPESK Unmodified 2446.0846 0.08460043 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 40.642 38.922 3 2.9546E-07 13704 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 108.25 108.25 29169000 0 0 0 9947900 10006000 9215700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3848 939 3745 72651;72652;72653 44190;44191;44192 44191 3 DTSSSHQR Unmodified 916.39987 0.39987182 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 1 1 1 2.7506 3.5985 2 0.00087248 445 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.57 119.57 62744000 10282000 9083800 9074500 0 0 0 0 169990 0 0 0 0 3554400 0 3640100 0 0 0 8087700 9385000 9466500 0 0 0 3849 320 3746 72654;72655;72656;72657;72658;72659;72660;72661;72662;72663;72664;72665 44193;44194;44195;44196;44197;44198;44199;44200;44201;44202;44203;44204;44205;44206 44194 14 DTTERPEAVTAGTVR Unmodified 1601.8009 0.80091285 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 15.057 15.876 2;3 4.2127E-07 5319 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.13 110.18 372180000 10964000 20344000 22286000 0 0 0 33708000 34051000 18868000 0 0 0 35093000 27583000 31808000 0 0 0 47751000 42609000 47121000 0 0 0 3850 1306 3747 72666;72667;72668;72669;72670;72671;72672;72673;72674;72675;72676;72677;72678;72679;72680;72681;72682;72683;72684;72685;72686;72687;72688 44207;44208;44209;44210;44211;44212;44213;44214;44215;44216 44214 7 DTTIFFR Unmodified 898.45487 0.45486751 684 P0ABV2 exbD Biopolymer transport protein ExbD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.698 35.874 2 0.02764 17399 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 69.432 62.522 59760000 0 3354800 3496400 1456600 1519800 1235100 0 4134900 2978600 2426400 0 2219700 2269400 1912300 2458400 0 0 0 7267500 8584000 7807900 2719000 2209800 1709700 3851 684 3748 72689;72690;72691;72692;72693;72694;72695;72696;72697;72698;72699;72700;72701;72702;72703;72704;72705;72706 44217;44218;44219 44219 3 DTTTIIDGVGEEAAIQGR Unmodified 1844.9116 0.91158551 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 4 5 5 2 2 2 3 4 3 1 3 4 4 2 2 2 41.363 39.58 2;3 6.0832E-45 19447 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 308.79 303.13 11587000000 983910000 962680000 954000000 25811000 21305000 23438000 843860000 805400000 791100000 33136000 27304000 21822000 875940000 851460000 940230000 4251700 0 0 1085200000 1182800000 1075400000 21682000 27207000 28993000 3852 240 3749 72707;72708;72709;72710;72711;72712;72713;72714;72715;72716;72717;72718;72719;72720;72721;72722;72723;72724;72725;72726;72727;72728;72729;72730;72731;72732;72733;72734;72735;72736;72737;72738;72739;72740;72741;72742;72743;72744;72745;72746;72747;72748;72749;72750;72751;72752;72753;72754;72755;72756;72757;72758;72759;72760;72761;72762;72763;72764;72765;72766;72767;72768;72769 44220;44221;44222;44223;44224;44225;44226;44227;44228;44229;44230;44231;44232;44233;44234;44235;44236;44237;44238;44239;44240;44241;44242;44243;44244;44245;44246;44247;44248;44249;44250;44251;44252;44253;44254;44255;44256;44257;44258;44259;44260;44261;44262;44263;44264;44265;44266;44267;44268;44269;44270;44271;44272;44273;44274;44275;44276;44277;44278;44279;44280;44281;44282;44283;44284;44285;44286;44287;44288;44289;44290;44291;44292;44293;44294 44248 75 DTVEIQGEVDKDWNSVEIDVK Unmodified 2417.1598 0.15981428 809 P0ADU5 ygiW Protein YgiW yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 4 8 6 6 6 3 5 5 4 4 47.659 46.213 2;3 7.2104E-29 22934 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 140.63 137.75 868950000 94074000 75157000 59394000 0 0 0 159550000 100980000 105930000 0 0 0 41638000 32084000 42274000 0 0 0 54175000 50429000 53269000 0 0 0 3853 809 3750 72770;72771;72772;72773;72774;72775;72776;72777;72778;72779;72780;72781;72782;72783;72784;72785;72786;72787;72788;72789;72790;72791;72792;72793;72794;72795;72796;72797;72798;72799;72800;72801;72802;72803;72804;72805;72806;72807;72808;72809;72810;72811;72812;72813;72814;72815;72816;72817;72818;72819;72820;72821;72822;72823;72824;72825;72826;72827;72828;72829;72830;72831;72832 44295;44296;44297;44298;44299;44300;44301;44302;44303;44304;44305;44306;44307;44308;44309;44310;44311;44312;44313;44314;44315;44316;44317;44318;44319;44320;44321;44322;44323;44324;44325;44326;44327;44328;44329;44330;44331;44332;44333;44334;44335;44336;44337;44338;44339;44340;44341;44342;44343 44306 31 DTVSELLTANR Unmodified 1217.6252 0.62518031 1069 P11447 argH Argininosuccinate lyase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.193 36.567 2 1.3321E-19 17029 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 229.61 215.61 156290000 17493000 17683000 21601000 0 0 0 0 14930000 13850000 0 0 0 8762900 9502400 8369400 0 0 0 16929000 15392000 11781000 0 0 0 3854 1069 3751 72833;72834;72835;72836;72837;72838;72839;72840;72841;72842;72843 44344;44345;44346;44347;44348;44349 44348 6 DTVVDVQSK Unmodified 989.50294 0.50293991 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 14.989 15.711 2 3.1775E-05 4965 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 153.71 135.86 581550000 0 85073000 80201000 0 0 0 56577000 55842000 52495000 0 0 0 50157000 42380000 46562000 0 0 1461100 51370000 0 59433000 0 0 0 3855 1408 3752 72844;72845;72846;72847;72848;72849;72850;72851;72852;72853;72854;72855;72856 44350;44351;44352;44353;44354;44355;44356;44357;44358;44359 44359 10 DTVYAFSR Unmodified 957.4556 0.45559579 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 25.429 24.227 2 0.00071397 7839 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 126.28 98.171 37074000 0 0 0 10761000 10556000 9978400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5779300 0 0 3856 1904 3753 72857;72858;72859;72860;72861;72862 44360;44361;44362;44363;44364;44365 44365 6 DTWDTHGGK Unmodified 1015.4359 0.43592298 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.386 12.232 2 0.00078428 3231 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.33 100.35 542270000 54226000 53911000 48805000 1387100 0 0 65815000 42652000 50644000 0 0 0 49396000 32386000 40250000 0 0 0 34721000 34460000 33614000 0 0 0 3857 540 3754 72863;72864;72865;72866;72867;72868;72869;72870;72871;72872;72873;72874;72875 44366;44367;44368 44366 3 DTWSDHIR Unmodified 1028.4676 0.46755746 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.524 19.12 2 0.00052127 6878 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 134.44 125.66 662460000 57532000 70554000 72466000 0 0 0 50759000 35126000 50653000 0 0 0 61267000 42155000 45554000 0 0 0 57182000 54097000 65114000 0 0 0 3858 1136 3755 72876;72877;72878;72879;72880;72881;72882;72883;72884;72885;72886;72887 44369;44370;44371;44372;44373;44374;44375;44376;44377;44378;44379;44380 44378 12 DTYDASLLQGVPR Unmodified 1433.7151 0.71505795 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 40.579 38.812 2 4.6884E-06 19289 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 160.53 150.73 156620000 8305600 9357100 12856000 0 0 0 16927000 18217000 19814000 0 0 0 0 0 0 0 0 0 32942000 38199000 0 0 0 0 3859 1966 3756 72888;72889;72890;72891;72892;72893;72894;72895 44381;44382;44383 44382 3 DVADVHDIAK Unmodified 1081.5404 0.54038805 1643 P61949 fldA Flavodoxin-1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 16.454 17.279 3 0.15367 5854 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 16.914 11.095 590260000 72575000 68567000 68734000 0 0 0 0 0 0 0 0 0 78423000 70727000 52106000 0 0 0 56263000 62117000 60753000 0 0 0 3860 1643 3757 72896;72897;72898;72899;72900;72901;72902;72903;72904 44384 44384 1 DVADWLK Unmodified 845.42832 0.42831841 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.344 38.601 2 0.017717 18898 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 79.454 59.106 76182000 17430000 15961000 22573000 0 0 0 4745000 3032800 4054000 0 0 0 0 0 0 0 0 0 2215600 3064400 3105900 0 0 0 3861 1181 3758 72905;72906;72907;72908;72909;72910;72911;72912;72913 44385;44386;44387 44385 3 DVAEILLEGLR Unmodified 1226.6871 0.68705229 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.182 53.716 2 1.218E-07 25643 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 195.7 187.17 4802900000 376940000 346800000 348200000 3209600 0 0 388650000 380370000 413810000 2508600 3841200 2313900 424000000 377170000 391200000 0 0 0 417160000 470350000 450580000 2192800 1903000 1707800 3862 1137 3759 72914;72915;72916;72917;72918;72919;72920;72921;72922;72923;72924;72925;72926;72927;72928;72929;72930;72931;72932 44388;44389;44390;44391;44392;44393;44394;44395;44396;44397;44398;44399 44397 10 DVAESDR Unmodified 790.34571 0.34571099 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 1 1 1 1 1 6.2722 7.122 2 0.0017774 1237 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 123.99 108.97 1312600000 177470000 179860000 180390000 0 0 0 114670000 112890000 106030000 0 0 0 56132000 52463000 65432000 0 0 0 106670000 87735000 72906000 0 0 0 3863 1444 3760 72933;72934;72935;72936;72937;72938;72939;72940;72941;72942;72943;72944;72945;72946 44400;44401;44402;44403;44404;44405;44406;44407;44408;44409;44410;44411;44412;44413 44401 14 DVAEYMAVLK Unmodified 1137.574 0.57399637 960 P0AFQ7 ycfH Uncharacterized deoxyribonuclease YcfH yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.765 43.25 2 0.0026379 21244 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.732 75.308 140510000 14673000 14479000 12425000 0 0 0 8716400 7817300 7324400 0 0 0 13398000 9636200 10460000 0 0 0 17693000 13775000 10110000 0 0 0 3864 960 3761 72947;72948;72949;72950;72951;72952;72953;72954;72955;72956;72957;72958 44414 44414 1 DVAGQAQTGTGK Unmodified 1131.552 0.55201537 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 10.773 11.778 2 0.00035362 2226 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 86.18 54.246 31450000 0 0 0 3187200 3583200 4283700 0 0 0 0 0 0 0 0 4811000 0 0 0 0 0 15585000 0 0 0 3865 438 3762 72959;72960;72961;72962;72963 44415;44416;44417;44418 44416 3 DVAGYAAGLELFDR Unmodified 1495.7307 0.73070802 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 52.88 51.478 2;3 8.0416E-12 25142 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 212.89 197 3313400000 255880000 232740000 195960000 0 2089500 0 351080000 397770000 384270000 0 0 0 234440000 231240000 213020000 0 0 0 301880000 263300000 249700000 0 0 0 3866 256 3763 72964;72965;72966;72967;72968;72969;72970;72971;72972;72973;72974;72975;72976;72977;72978;72979;72980;72981;72982;72983;72984;72985;72986;72987;72988 44419;44420;44421;44422;44423;44424;44425;44426;44427;44428;44429;44430;44431;44432;44433;44434;44435;44436;44437;44438;44439;44440;44441;44442;44443;44444;44445;44446;44447;44448;44449;44450 44427 32 DVAGYAAGLELFDRR Unmodified 1651.8318 0.83181904 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 2 1 2 2 2 1 1 2 1 2 1 45.824 44.322 2;3 5.8143E-07 20747 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 93.243 88.032 182840000 10771000 18129000 11742000 0 0 0 20509000 22393000 19725000 0 0 0 10472000 11840000 12309000 0 0 0 11049000 17452000 16444000 0 0 0 3867 256 3764 72989;72990;72991;72992;72993;72994;72995;72996;72997;72998;72999;73000;73001;73002;73003;73004;73005;73006 44451;44452;44453;44454;44455 44455 4 DVAIIDR Unmodified 800.43922 0.43921744 1533 P39377 iadA Isoaspartyl dipeptidase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.75 22.221 2 0.012974 9327 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.244 34.885 181970000 20637000 23604000 18611000 0 0 0 20917000 18308000 20286000 0 0 0 8652100 8909800 9475500 0 0 0 9190300 10256000 13118000 0 0 0 3868 1533 3765 73007;73008;73009;73010;73011;73012;73013;73014;73015;73016;73017;73018 44456;44457;44458;44459 44459 4 DVAIVVK Unmodified 742.45889 0.45889025 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 1 2 2 2 2 22.318 21.886 1;2 0.048643 9250 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.287 36.12 1211500000 254200000 248020000 219150000 0 0 0 46274000 6198300 15576000 0 0 0 24826000 141680000 135430000 0 0 0 39110000 41888000 39125000 0 0 0 3869 1111 3766 73019;73020;73021;73022;73023;73024;73025;73026;73027;73028;73029;73030;73031;73032;73033;73034;73035;73036;73037;73038;73039;73040;73041;73042 44460;44461;44462;44463;44464;44465;44466;44467;44468;44469;44470;44471 44466 11 DVATPEVADIR Unmodified 1184.6037 0.60371659 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 29.368 28.093 2 1.5934E-05 13064 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 140.75 119.29 2702500000 190130000 184400000 164250000 472460 0 0 244430000 226910000 228430000 0 0 0 222350000 234670000 206550000 0 0 0 259260000 275300000 265330000 0 0 0 3870 1120 3767 73043;73044;73045;73046;73047;73048;73049;73050;73051;73052;73053;73054;73055 44472;44473;44474;44475;44476;44477;44478;44479;44480;44481;44482 44474 11 DVDAAYMNK Unmodified 1025.4488 0.44879585 14;8 CON__P48668;CON__P02538;CON__P04259;CON__P13647 no no 0 0 0 By MS/MS 1 18.012 18.229 2 0.019474 5290 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 63.565 9.4079 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 3871 8;14 3768 73056 44483 44483 1 DVDALIDVLVNAR Unmodified 1411.7671 0.76709352 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.789 54.389 2 2.6202E-05 20003 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 106.29 101.68 127440000 0 0 14010000 6886000 7932600 8228800 0 0 0 13223000 14131000 14171000 12817000 0 12106000 0 0 0 15691000 0 0 2078400 2438600 3722100 3872 1765 3769 73057;73058;73059;73060;73061;73062;73063;73064;73065;73066;73067;73068;73069 44484;44485 44485 2 DVDGAYMTK Unmodified 998.4379 0.43789681 11 CON__P04264 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 17.668 17.796 2 0.00099819 5274 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 95.815 47.06 903410000 0 0 0 24357000 21854000 23685000 0 0 0 203550000 202640000 183090000 0 0 0 10036000 7092800 7028100 0 0 0 75067000 71832000 73175000 + 3873 11 3770 73070;73071;73072;73073;73074;73075;73076;73077;73078;73079;73080;73081;73082;73083;73084 44486;44487;44488;44489;44490;44491;44492;44493;44494 44490 9 DVDGDQTYMR Unmodified 1198.4925 0.49245158 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.763 19.172 2 3.9893E-06 7312 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 156.75 156.75 218320000 21829000 23968000 20436000 0 0 673150 14265000 13602000 12339000 4553100 3136300 2533200 17599000 15483000 14673000 0 0 0 20510000 18007000 14713000 0 0 0 3874 144 3771 73085;73086;73087;73088;73089;73090;73091;73092;73093;73094;73095;73096;73097;73098;73099;73100 44495;44496;44497;44498;44499 44498 5 DVDLDGIYYCPHHPQGSVEEFR Unmodified 2632.1653 0.16525079 1659 P63228 gmhB D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.681 34.125 3 2.7063E-10 16361 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.14 122.36 169250000 17515000 23445000 10920000 0 0 0 22643000 15330000 19359000 0 0 0 11078000 5285900 9370200 0 0 0 12428000 11275000 10604000 0 0 0 3875 1659 3772 73101;73102;73103;73104;73105;73106;73107;73108;73109;73110;73111;73112 44500;44501 44500 2 DVDNAYMIK Oxidation (M) 1083.4907 0.49066067 17 CON__P35908 yes yes 0 1 0 By MS/MS By matching By MS/MS 1 1 1 21.068 20.957 2 0.073403 6571 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 51.854 49.988 11230000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4305900 3719600 3204500 + 3876 17 3773 73113;73114;73115 44502;44503 44503 2 DVDNAYMIK Unmodified 1067.4957 0.49574604 17 CON__P35908 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 26.977 25.438 2 0.0010092 9026 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 95.531 85.544 86679000 0 0 0 6854100 6827600 7316600 0 0 0 4621500 5719800 4561400 0 0 0 0 0 0 0 0 0 15142000 17559000 18076000 + 3877 17 3773 73116;73117;73118;73119;73120;73121;73122;73123;73124 44504;44505 44505 2 DVDSIYK Unmodified 838.40725 0.40724861 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.458 19.771 2 0.0040595 7688 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.39 93.13 2567700000 119240000 101980000 100680000 710820 0 733700 280570000 278210000 255070000 2380100 1974100 2164900 188920000 167470000 171210000 852140 416530 0 331420000 304530000 257930000 1248100 0 0 3878 337 3774 73125;73126;73127;73128;73129;73130;73131;73132;73133;73134;73135;73136;73137;73138;73139;73140;73141;73142;73143;73144 44506;44507;44508;44509;44510;44511;44512;44513;44514;44515;44516;44517 44508 12 DVDTLGMADIEK Unmodified 1305.6122 0.61223236 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 37.288 35.471 2;3 1.4594E-06 16438 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 148.32 141.63 4670500000 398480000 318800000 269020000 3097300 3756300 3134800 220730000 221410000 202380000 4789500 4241600 4367500 346350000 262420000 208090000 0 0 0 728380000 729250000 704280000 12602000 11625000 13245000 3879 938 3775 73145;73146;73147;73148;73149;73150;73151;73152;73153;73154;73155;73156;73157;73158;73159;73160;73161;73162;73163;73164;73165;73166;73167;73168 44518;44519;44520;44521;44522;44523;44524;44525;44526;44527;44528;44529;44530;44531;44532;44533;44534;44535;44536;44537;44538 44538 19 DVDTLGMADIEK Oxidation (M) 1321.6071 0.60714699 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 1 0 By matching By MS/MS 1 1 29.097 27.645 2 0.016849 12817 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 56.043 53.206 10040000 0 0 0 0 0 0 0 3964400 0 0 0 0 0 0 0 0 0 0 0 0 6075900 0 0 0 3880 938 3775 73169;73170 44539 44539 431 0 DVDTLGMADIEKK Unmodified 1433.7072 0.70719538 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 29.033 27.704 2;3 1.1463E-10 10167 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 160.36 153.08 1601000000 157910000 151680000 145930000 6263700 15601000 15930000 0 34192000 38009000 12864000 8913500 9292100 90962000 89779000 96546000 4070100 4334700 4242700 223580000 212390000 224330000 17691000 19130000 17326000 3881 938 3776 73171;73172;73173;73174;73175;73176;73177;73178;73179;73180;73181;73182;73183;73184;73185;73186;73187;73188;73189;73190;73191;73192;73193;73194;73195;73196;73197;73198;73199;73200;73201;73202;73203;73204;73205;73206;73207;73208;73209 44540;44541;44542;44543;44544;44545;44546;44547;44548;44549;44550;44551;44552;44553;44554;44555;44556;44557;44558;44559;44560;44561;44562;44563;44564;44565;44566;44567;44568;44569;44570 44546 31 DVDVLYFR Unmodified 1025.5182 0.51819605 316 P0A780 nusB N utilization substance protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.681 42.181 2 7.3797E-05 20482 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.34 150.18 1053400000 70230000 64650000 63575000 2265600 0 1339500 97175000 97028000 102520000 14497000 12631000 11272000 71936000 65693000 65381000 5193500 3847500 3053000 92747000 100010000 96850000 4910900 3275800 3314000 3882 316 3777 73210;73211;73212;73213;73214;73215;73216;73217;73218;73219;73220;73221;73222;73223;73224;73225;73226;73227;73228;73229;73230;73231;73232 44571;44572;44573;44574;44575;44576;44577;44578;44579;44580;44581;44582;44583;44584;44585;44586;44587;44588;44589;44590;44591 44584 19 DVDVWHPDVR Unmodified 1236.5887 0.58873523 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 29.537 28.281 2;3 0.0001204 12583 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.6 108.27 1155100000 114860000 108410000 94267000 0 0 0 115730000 111420000 105470000 0 0 0 70230000 65551000 59437000 0 0 0 100880000 102170000 106660000 0 0 0 3883 1298 3778 73233;73234;73235;73236;73237;73238;73239;73240;73241;73242;73243;73244;73245;73246;73247;73248;73249;73250;73251;73252;73253;73254;73255;73256 44592;44593;44594;44595;44596;44597;44598;44599;44600;44601;44602;44603;44604;44605;44606;44607;44608;44609;44610;44611;44612;44613;44614 44612 21 DVDYIVK Unmodified 850.44363 0.44363412 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.524 23.45 2 0.051776 8469 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 62.714 17.741 392070000 0 0 0 5388000 4306200 4358600 72217000 64557000 59996000 61263000 49224000 50045000 3479100 0 2335200 0 0 6928500 0 3155500 0 4812200 0 0 3884 1057 3779 73257;73258;73259;73260;73261;73262;73263;73264;73265;73266;73267;73268;73269;73270 44615 44615 1 DVDYIVKDGEVIIVDEHTGR Unmodified 2271.1383 0.13829098 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 2 2 2 1 1 2 1 2 1 1 37.861 36.19 3;4 2.6389E-23 14573 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 166.25 165.04 164900000 0 0 0 2913000 3131000 3802000 0 0 0 28495000 24228000 25016000 0 0 0 12203000 6569700 10725000 0 4374600 0 19420000 12846000 11183000 3885 1057 3780 73271;73272;73273;73274;73275;73276;73277;73278;73279;73280;73281;73282;73283;73284;73285;73286;73287;73288 44616;44617;44618;44619;44620;44621;44622 44616 7 DVEFQVGR Unmodified 948.46649 0.46649483 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 26.028 25.083 2 0.0045816 11290 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 88.029 55.558 107770000 10089000 12044000 14532000 0 0 0 0 0 0 0 0 0 13027000 10964000 11914000 0 0 0 0 17776000 17421000 0 0 0 3886 1102 3781 73289;73290;73291;73292;73293;73294;73295;73296 44623 44623 1 DVEGAER Unmodified 774.3508 0.35079637 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 1 1 1 2 1 2 1 1 2 1 1 10.136 10.825 2 0.0023081 2244 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.59 91.549 2694900000 176150000 172400000 157950000 529920 0 367040 65659000 71903000 62823000 0 6113600 0 342960000 340000000 270450000 0 0 4574400 287360000 337400000 298600000 41665000 29563000 28397000 3887 192 3782 73297;73298;73299;73300;73301;73302;73303;73304;73305;73306;73307;73308;73309;73310;73311;73312;73313;73314;73315;73316;73317;73318;73319;73320;73321;73322;73323 44624;44625;44626;44627;44628;44629;44630;44631;44632;44633;44634;44635;44636;44637;44638;44639;44640 44631 16 DVEGAERNGAEGVGLYR Unmodified 1790.8547 0.85473933 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 48.662 47.41 3 0.16805 23011 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 9.5303 5.5622 111660000 10183000 13203000 8473300 0 0 0 0 0 10343000 0 0 0 12040000 12917000 12084000 0 0 0 0 16599000 15816000 0 0 0 3888 192 3783 73324;73325;73326;73327;73328;73329;73330;73331;73332 44641 44641 1 DVEPPKFTEVTDVVLITR Unmodified 2057.1045 0.10447166 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 1 By matching By MS/MS 1 1 49.514 48.158 3 0.00011381 23441 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 66.827 63.637 26653000 13959000 0 12694000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3889 71 3784 73333;73334 44642 44642 1 DVESLNMFAELR Unmodified 1422.6813 0.68131498 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 52.1 50.838 2 4.4536E-12 25052 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 196.27 186.04 2453600000 0 0 0 0 0 0 248410000 227970000 229770000 0 0 0 288020000 261110000 232520000 0 0 0 295230000 331710000 338850000 0 0 0 3890 1324 3785 73335;73336;73337;73338;73339;73340;73341;73342;73343 44643;44644;44645;44646;44647;44648;44649;44650;44651 44644 6 DVFHPVFDVDQQGR Unmodified 1657.7849 0.78486885 1879 P76621 csiD Protein CsiD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 38.527 36.774 3 3.022E-07 17821 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.03 101.83 70795000 15457000 14040000 15362000 0 0 0 9406400 6647100 8362000 0 0 0 0 0 1520700 0 0 0 0 0 0 0 0 0 3891 1879 3786 73344;73345;73346;73347;73348;73349;73350 44652;44653;44654 44653 3 DVFHPVFDVDQQGRPVMR Unmodified 2141.0476 0.047642255 1879 P76621 csiD Protein CsiD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 37.814 36.121 3;4 5.5522E-10 17356 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.98 121.71 478010000 97762000 91124000 90683000 0 0 0 41424000 46295000 46012000 0 0 0 6794800 3553200 5910200 0 0 0 14746000 19705000 14006000 0 0 0 3892 1879 3787 73351;73352;73353;73354;73355;73356;73357;73358;73359;73360;73361;73362;73363;73364;73365;73366;73367;73368;73369;73370;73371;73372 44655;44656;44657;44658;44659;44660;44661;44662;44663 44662 8 DVFIDLVCYR Unmodified 1298.6329 0.63290823 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.233 51.043 2 2.8363E-12 24804 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 210.1 200.88 2414300000 159730000 169220000 148070000 7553400 4483200 4830500 118400000 109490000 107720000 5100400 6219300 4970800 163530000 175830000 161310000 4024200 0 3478000 343850000 327430000 336360000 16602000 17659000 18460000 3893 937 3788 73373;73374;73375;73376;73377;73378;73379;73380;73381;73382;73383;73384;73385;73386;73387;73388;73389;73390;73391;73392;73393;73394;73395;73396 44664;44665;44666;44667;44668;44669;44670;44671;44672;44673;44674;44675;44676;44677;44678;44679;44680;44681;44682 44673 18 DVFINAGIK Unmodified 975.53893 0.53893149 857 P0AEG4 dsbA Thiol:disulfide interchange protein DsbA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 1 2 2 2 33.945 32.462 2 0.0047118 15534 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 77.058 44.587 1858100000 177560000 137070000 119040000 0 0 0 187090000 187220000 4189500 0 0 0 137710000 129820000 131890000 0 0 0 207470000 236400000 202630000 0 0 0 3894 857 3789 73397;73398;73399;73400;73401;73402;73403;73404;73405;73406;73407;73408;73409;73410;73411;73412;73413;73414;73415 44683;44684;44685;44686;44687;44688;44689;44690;44691;44692;44693;44694 44683 11 DVFLAQIRPK Unmodified 1185.687 0.68699271 922 P0AF98 lptF Lipopolysaccharide export system permease protein LptF yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 31.04 29.651 3 0.00070056 13835 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 84.615 78.382 43324000 3194700 0 2548200 0 0 495950 3981200 4467400 5480600 0 0 0 2915300 4040500 2411400 0 0 0 4071400 3777100 5939600 0 0 0 3895 922 3790 73416;73417;73418;73419;73420;73421;73422;73423;73424;73425;73426;73427;73428 44695;44696;44697 44695 3 DVFLGLDK Unmodified 905.48583 0.48583328 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 40.212 38.555 2 0.0078141 19143 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 82.716 75.045 1088700000 102700000 94855000 85433000 0 0 0 112760000 103240000 95968000 0 0 0 87584000 84292000 82467000 0 0 0 0 115480000 123900000 0 0 0 3896 59 3791 73429;73430;73431;73432;73433;73434;73435;73436;73437;73438;73439 44698;44699;44700;44701;44702;44703;44704;44705;44706;44707;44708 44698 11 DVFLGLDKR Unmodified 1061.5869 0.58694431 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 2 2 31.299 29.787 2;3 0.0012457 14402 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.213 70.006 941050000 91595000 72170000 79494000 3241300 2886700 3277300 73308000 64969000 63967000 3456000 4543000 7735900 54970000 62428000 61276000 0 0 1733000 97902000 87026000 91554000 4832500 4408900 4275700 3897 59 3792 73440;73441;73442;73443;73444;73445;73446;73447;73448;73449;73450;73451;73452;73453;73454;73455;73456;73457;73458;73459;73460;73461;73462;73463;73464;73465;73466;73467;73468;73469;73470;73471;73472;73473;73474;73475;73476;73477;73478;73479;73480 44709;44710;44711;44712;44713;44714;44715;44716;44717;44718;44719;44720;44721;44722;44723;44724;44725;44726;44727;44728;44729;44730;44731;44732;44733;44734 44711 26 DVFMGVDELQVGMR Unmodified 1594.7483 0.74834869 532 P0A9K9 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 2 3 2 2 2 2 2 3 3 1 1 1 3 2 3 2 2 2 52.532 51.292 2;3 1.2124E-11 25120 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 219.03 216.3 4919900000 261950000 240510000 236850000 65629000 64877000 57682000 342900000 332190000 334430000 144950000 126710000 140070000 347320000 361260000 344830000 22634000 20241000 16866000 414590000 405660000 412180000 77250000 74114000 74226000 3898 532 3793 73481;73482;73483;73484;73485;73486;73487;73488;73489;73490;73491;73492;73493;73494;73495;73496;73497;73498;73499;73500;73501;73502;73503;73504;73505;73506;73507;73508;73509;73510;73511;73512;73513;73514;73515;73516;73517;73518;73519;73520;73521;73522;73523;73524;73525;73526;73527;73528;73529;73530;73531;73532 44735;44736;44737;44738;44739;44740;44741;44742;44743;44744;44745;44746;44747;44748;44749;44750;44751;44752;44753;44754;44755;44756;44757;44758;44759;44760;44761;44762;44763;44764;44765;44766;44767;44768;44769;44770;44771;44772;44773;44774;44775;44776;44777;44778;44779;44780;44781 44749 47 DVFMGVDELQVGMR Oxidation (M) 1610.7433 0.74326331 532 P0A9K9 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 3 3 2 2 3 2 3 3 4 3 3 1 1 2 2 3 2 2 3 48.835 47.367 2 6.8451E-06 22983 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.95 91.431 307410000 0 8590900 2112500 5404100 4553200 2163300 39924000 37583000 35645000 23002000 18135000 18924000 22114000 19595000 2549300 858380 0 0 17589000 15786000 12084000 6336300 5737200 8719500 3899 532 3793 73533;73534;73535;73536;73537;73538;73539;73540;73541;73542;73543;73544;73545;73546;73547;73548;73549;73550;73551;73552;73553;73554;73555;73556;73557;73558;73559;73560;73561;73562;73563;73564;73565;73566;73567;73568;73569;73570;73571;73572;73573;73574;73575;73576;73577;73578;73579;73580;73581;73582 44782;44783;44784;44785;44786;44787;44788;44789;44790;44791;44792;44793;44794;44795;44796;44797;44798;44799;44800;44801;44802;44803 44794 318;319 10 DVFNAFR Unmodified 867.4239 0.42390173 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.025 35.368 2 0.0029824 17478 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 109.88 104.34 322370000 21982000 23006000 20555000 0 0 0 35648000 33538000 32655000 0 0 0 22586000 22329000 21586000 0 0 0 27333000 32267000 28885000 0 0 0 3900 1078 3794 73583;73584;73585;73586;73587;73588;73589;73590;73591;73592;73593;73594 44804;44805;44806;44807;44808;44809;44810;44811;44812;44813;44814 44804 11 DVFPIIADR Unmodified 1044.5604 0.56039521 196 P09029 purK N5-carboxyaminoimidazole ribonucleotide synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.214 41.798 2 0.00063648 20473 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.14 101.74 171650000 45706000 42419000 39102000 0 296450 495510 0 0 0 0 0 0 5049600 5817900 5489400 0 0 0 9627100 8655900 8987500 0 0 0 3901 196 3795 73595;73596;73597;73598;73599;73600;73601;73602;73603;73604;73605 44815;44816;44817;44818;44819;44820;44821 44818 7 DVFRPGHADYTYEQK Unmodified 1824.8431 0.84311201 1075 P12008 aroC Chorismate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 3 3 3 1 3 2 2 2 3 3 3 19.167 19.726 2;3;4 3.1352E-11 7429 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 166.48 154.61 566040000 104100000 88781000 86826000 0 0 0 34169000 10936000 36927000 0 0 0 24502000 23256000 25127000 0 0 0 40302000 48290000 42823000 0 0 0 3902 1075 3796 73606;73607;73608;73609;73610;73611;73612;73613;73614;73615;73616;73617;73618;73619;73620;73621;73622;73623;73624;73625;73626;73627;73628;73629;73630;73631;73632;73633;73634;73635;73636 44822;44823;44824;44825;44826;44827;44828;44829;44830;44831 44827 10 DVFVHFSAIQGNGFK Unmodified 1664.8311 0.83109076 566 P0A9Y6 cspC Cold shock-like protein CspC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 3 2 1 2 2 3 2 2 2 2 3 3 41.207 39.773 2;3 3.5261E-27 19242 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 295.34 285.45 7385300000 591080000 532280000 464310000 13146000 10094000 10147000 560190000 567920000 550890000 3096900 0 0 469980000 482770000 413600000 35695000 24067000 19856000 887690000 921560000 826940000 0 0 0 3903 566 3797 73637;73638;73639;73640;73641;73642;73643;73644;73645;73646;73647;73648;73649;73650;73651;73652;73653;73654;73655;73656;73657;73658;73659;73660;73661;73662;73663;73664;73665;73666;73667;73668;73669;73670;73671;73672;73673;73674;73675;73676;73677 44832;44833;44834;44835;44836;44837;44838;44839;44840;44841;44842;44843;44844;44845;44846;44847;44848;44849;44850;44851;44852;44853;44854;44855;44856;44857;44858;44859;44860 44852 27 DVFVHFSAIQNDGYK Unmodified 1738.8315 0.83148469 565 P0A9X9 cspA Cold shock protein CspA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 3 2 2 2 3 3 4 1 1 2 3 2 3 1 1 2 2 3 2 1 1 38.715 36.979 2;3 1.6112E-36 16961 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 269.81 267.06 4736600000 83143000 77522000 82203000 4864500 3855200 3770500 478030000 499850000 455560000 1658800 1746500 3065200 361370000 381640000 333400000 0 762330 985270 666270000 677460000 613860000 2107200 2037600 1400400 3904 565 3798 73678;73679;73680;73681;73682;73683;73684;73685;73686;73687;73688;73689;73690;73691;73692;73693;73694;73695;73696;73697;73698;73699;73700;73701;73702;73703;73704;73705;73706;73707;73708;73709;73710;73711;73712;73713;73714;73715;73716;73717;73718;73719;73720;73721;73722;73723;73724 44861;44862;44863;44864;44865;44866;44867;44868;44869;44870;44871;44872;44873;44874;44875;44876;44877;44878;44879;44880;44881;44882;44883;44884;44885;44886;44887;44888;44889;44890;44891;44892;44893;44894;44895;44896;44897;44898;44899;44900;44901;44902;44903;44904;44905;44906;44907;44908;44909;44910 44909 46 DVFVHFSAIQNDNYR Unmodified 1823.8591 0.85909643 1452 P36995 cspB Cold shock-like protein CspB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 38.326 36.71 3 2.2233E-06 17784 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.61 99.246 37843000 0 0 0 672300 435190 0 0 0 0 0 0 0 1863900 0 1788500 0 0 0 11584000 11876000 9622900 0 0 0 3905 1452 3799 73725;73726;73727;73728;73729;73730;73731 44911 44911 0 DVFVHFSAIQTNGFK Unmodified 1708.8573 0.85730551 495 P0A972 cspE Cold shock-like protein CspE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 1 2 2 2 1 1 1 2 3 3 1 4 4 2 1 42.511 40.817 2;3 8.0323E-12 20385 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.86 159.4 1681900000 40856000 42882000 30365000 2791300 2255600 2863900 155740000 163100000 153080000 1864100 2061600 1299400 154640000 149830000 147270000 0 0 2936800 214790000 216050000 195170000 2044700 0 0 3906 495 3800 73732;73733;73734;73735;73736;73737;73738;73739;73740;73741;73742;73743;73744;73745;73746;73747;73748;73749;73750;73751;73752;73753;73754;73755;73756;73757;73758;73759;73760;73761;73762;73763;73764;73765;73766;73767;73768;73769;73770 44912;44913;44914;44915;44916;44917;44918;44919;44920;44921;44922;44923;44924;44925;44926;44927;44928;44929 44912 11 DVFYQPVHPYSIGLLNAVPR Unmodified 2284.2004 0.20043773 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.208 49.867 3 6.4599E-09 17988 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 111.95 111.84 151600000 0 0 0 31724000 31482000 30334000 0 0 0 7366600 7181700 9462300 0 0 4614400 0 0 0 4948600 7611300 0 4656900 5813000 6403100 3907 1807 3801 73771;73772;73773;73774;73775;73776;73777;73778;73779;73780;73781;73782 44930;44931;44932;44933 44932 4 DVGADQALK Unmodified 915.46616 0.46616048 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 15.019 15.342 2 0.0050832 5310 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.738 43.803 179960000 54004000 57012000 64705000 0 0 0 0 0 0 0 913390 0 0 0 0 846260 1222900 0 0 0 0 1258800 0 0 3908 1173 3802 73783;73784;73785;73786;73787;73788;73789 44934;44935;44936 44934 3 DVGDWLYAR Unmodified 1093.5193 0.51925868 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.029 42.514 2 7.4154E-06 20991 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 170.32 165.96 471540000 47814000 50140000 47359000 0 0 0 41393000 34017000 34750000 0 0 0 34200000 35635000 36071000 0 0 0 31330000 36208000 42626000 0 0 0 3909 1348 3803 73790;73791;73792;73793;73794;73795;73796;73797;73798;73799;73800;73801 44937;44938;44939;44940;44941;44942;44943;44944;44945;44946;44947;44948 44938 12 DVGIIATEK Unmodified 944.51786 0.51786169 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 23.635 22.934 2 0.00034096 9454 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 114.28 82.154 179640000 10759000 10023000 9476200 0 0 0 9448900 0 10486000 0 0 0 20093000 22383000 22204000 0 0 0 21895000 22903000 19969000 0 0 0 3910 180 3804 73802;73803;73804;73805;73806;73807;73808;73809;73810;73811;73812 44949;44950;44951;44952;44953;44954;44955;44956;44957 44957 9 DVGTLEAYWK Unmodified 1180.5764 0.57643921 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.064 41.538 2 0.00035108 20082 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 108.74 97.248 664900000 55863000 51746000 49590000 291450 0 0 92640000 96094000 82295000 0 0 0 40192000 40017000 35545000 0 0 0 38812000 40025000 41793000 0 0 0 3911 283 3805 73813;73814;73815;73816;73817;73818;73819;73820;73821;73822;73823;73824;73825 44958;44959;44960;44961;44962;44963;44964;44965;44966;44967;44968;44969 44963 12 DVGVAIIGQTSSLAPADK Unmodified 1740.9258 0.92577901 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.552 40.853 2 4.4999E-17 20270 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.66 194.16 411440000 18528000 12723000 12297000 0 0 0 55195000 59862000 57576000 0 0 0 39535000 33232000 37178000 0 0 0 25648000 32749000 26918000 0 0 0 3912 167 3806 73826;73827;73828;73829;73830;73831;73832;73833;73834;73835;73836;73837 44970;44971;44972;44973;44974;44975;44976;44977 44970 8 DVGVAIIGQTSSLAPADKR Unmodified 1897.0269 0.026890038 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.699 34.142 2;3 1.6742E-36 15670 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 252.42 223.72 1911400000 81814000 67993000 64677000 0 0 0 261040000 278070000 244130000 0 0 0 155970000 157890000 158910000 0 0 0 146360000 155530000 139020000 0 0 0 3913 167 3807 73838;73839;73840;73841;73842;73843;73844;73845;73846;73847;73848;73849;73850;73851;73852;73853;73854;73855;73856;73857;73858;73859;73860;73861 44978;44979;44980;44981;44982;44983;44984;44985;44986;44987;44988;44989;44990;44991;44992;44993;44994;44995;44996;44997;44998;44999;45000 45000 23 DVGVDNAGAK Unmodified 944.45632 0.45632407 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 2 2 2 1 2 1 2 2 2 1 2 2 1 11.828 12.701 2 0.00041714 3500 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 104.44 76.33 4777400000 89655000 96423000 70768000 4661400 4173400 4157900 462360000 410660000 374390000 0 0 0 557520000 462480000 392690000 0 673290 0 659330000 569740000 617670000 0 0 0 3914 895 3808 73862;73863;73864;73865;73866;73867;73868;73869;73870;73871;73872;73873;73874;73875;73876;73877;73878;73879;73880;73881;73882;73883;73884;73885;73886;73887 45001;45002;45003;45004;45005;45006;45007 45001 7 DVHEAAADALGLDDSQR Unmodified 1781.818 0.81801947 1241 P24202 mrr Mrr restriction system protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 31.18 29.823 2;3 1.0351E-18 14042 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.13 177.62 222530000 14634000 14203000 12047000 0 0 0 24884000 24224000 22553000 0 0 0 15356000 17757000 14983000 0 0 0 23407000 20962000 17521000 0 0 0 3915 1241 3809 73888;73889;73890;73891;73892;73893;73894;73895;73896;73897;73898;73899;73900;73901;73902;73903;73904;73905;73906;73907;73908;73909;73910;73911 45008;45009;45010;45011;45012;45013 45011 5 DVHPTHYGR Unmodified 1080.5101 0.51009098 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 1 1 1 3 3 3 2 2 2 4 3 3 2 2 2 3 2 3 10.551 11.03 1;2;3 1.8741E-05 2045 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 144.12 133.27 58610000000 377990000 355790000 211330000 12474000 5824800 12646000 348400000 260940000 273920000 3712200000 3045900000 3480500000 350510000 326300000 355800000 10633000000 9098600000 11883000000 435710000 372100000 360130000 4825800000 3813000000 4057900000 3916 463 3810 73912;73913;73914;73915;73916;73917;73918;73919;73920;73921;73922;73923;73924;73925;73926;73927;73928;73929;73930;73931;73932;73933;73934;73935;73936;73937;73938;73939;73940;73941;73942;73943;73944;73945;73946;73947;73948;73949;73950;73951;73952;73953;73954;73955;73956;73957;73958;73959;73960;73961;73962 45014;45015;45016;45017;45018;45019;45020;45021;45022;45023;45024;45025;45026;45027;45028;45029;45030;45031;45032;45033;45034;45035;45036;45037;45038;45039;45040;45041;45042;45043;45044;45045;45046;45047;45048;45049;45050;45051;45052;45053;45054 45017 41 DVIADAFLQQILLR Unmodified 1613.9141 0.91409211 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 55.853 54.38 2;3 2.0652E-26 27153 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 232.84 217.21 371290000 49790000 46165000 47706000 0 0 0 11847000 6546900 11907000 0 0 0 28649000 26589000 29306000 0 0 0 36851000 39005000 36923000 0 0 0 3917 179 3811 73963;73964;73965;73966;73967;73968;73969;73970;73971;73972;73973;73974;73975;73976;73977;73978;73979;73980;73981;73982;73983;73984;73985;73986 45055;45056;45057;45058;45059;45060 45056 6 DVIAEPYR Unmodified 961.4869 0.48689592 32 P00547 thrB Homoserine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 22.98 22.38 2 0.0021725 9677 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 102.71 97.859 233290000 40325000 35060000 43053000 0 0 0 0 0 0 0 0 0 13415000 14501000 11052000 0 0 0 23633000 30165000 22081000 0 0 0 3918 32 3812 73987;73988;73989;73990;73991;73992;73993;73994;73995 45061;45062;45063;45064;45065;45066;45067 45061 7 DVIAFPK Unmodified 788.44324 0.44324019 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.109 30.711 2 0.040498 14850 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.776 47.85 2757500000 205170000 170560000 164680000 0 0 0 283580000 251880000 242900000 0 0 692910 233070000 222310000 203390000 0 0 0 265910000 247610000 265720000 0 0 0 3919 1189 3813 73996;73997;73998;73999;74000;74001;74002;74003;74004;74005;74006;74007;74008 45068;45069;45070;45071;45072;45073;45074;45075;45076;45077;45078;45079 45068 12 DVIEAAHALR Unmodified 1093.588 0.58800695 892 P0AEW9 fruK 1-phosphofructokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 3 2 1 1 1 22.129 22.108 2;3 3.575E-05 9426 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 149.65 140.07 1029500000 92570000 92443000 74316000 577050 509050 737340 58964000 65479000 62621000 0 0 0 83216000 80296000 94603000 0 0 0 98291000 110000000 110440000 1539800 1590800 1261100 3920 892 3814 74009;74010;74011;74012;74013;74014;74015;74016;74017;74018;74019;74020;74021;74022;74023;74024;74025;74026;74027;74028;74029;74030;74031;74032;74033;74034;74035;74036;74037;74038;74039 45080;45081;45082;45083;45084;45085;45086;45087;45088;45089;45090;45091;45092;45093;45094;45095;45096;45097;45098;45099;45100;45101;45102;45103 45081 24 DVIILLDSITR Unmodified 1256.734 0.73400248 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.939 53.491 2 2.497E-14 26631 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 213.53 150.11 959880000 95218000 92682000 83355000 19638000 21085000 20045000 43270000 36763000 43769000 105540000 97866000 78848000 34690000 31732000 29083000 0 0 0 33371000 38084000 33217000 6389400 7936600 7299500 3921 982 3815 74040;74041;74042;74043;74044;74045;74046;74047;74048;74049;74050;74051;74052;74053;74054;74055;74056;74057;74058;74059;74060 45104;45105;45106;45107;45108;45109;45110;45111;45112;45113;45114;45115 45113 10 DVILFPAMR Unmodified 1060.5739 0.57393679 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.279 47.914 2 0.00016758 23782 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.4 125.04 1612800000 113450000 130350000 111230000 0 0 0 165920000 184870000 178410000 0 0 0 116340000 113850000 108320000 0 0 0 135720000 133570000 120760000 0 0 0 3922 448;449 3816 74061;74062;74063;74064;74065;74066;74067;74068;74069;74070;74071;74072 45116;45117;45118 45116 3 DVILFPAMR Oxidation (M) 1076.5689 0.56885141 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 41.975 40.162 2 0.071038 20152 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 44.447 35.206 17595000 4249900 0 0 0 0 0 4418300 4259800 0 0 0 0 0 0 0 0 0 0 0 2185100 2481400 0 0 0 3923 448;449 3816 74073;74074;74075;74076;74077 45119;45120;45121 45119 0 DVILFPAMRPQK Unmodified 1413.7802 0.78024117 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 38.61 36.88 2;3 3.2164E-05 18201 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.22 97.737 2090200000 188320000 167240000 134700000 749970 393130 493080 312430000 303110000 304610000 0 4325900 1679500 102710000 98029000 99811000 0 0 0 131110000 122860000 117590000 0 0 0 3924 449 3817 74078;74079;74080;74081;74082;74083;74084;74085;74086;74087;74088;74089;74090;74091;74092;74093;74094;74095;74096;74097;74098;74099;74100;74101;74102;74103;74104;74105;74106 45122;45123;45124;45125;45126;45127;45128;45129;45130;45131;45132;45133;45134;45135;45136;45137;45138;45139;45140;45141;45142;45143;45144;45145;45146 45125 25 DVILFPAMRPVK Unmodified 1384.7901 0.79007757 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 41.673 40.009 2;3 4.9882E-05 20009 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 93.258 92.568 2447700000 175140000 166940000 152130000 1981400 2462600 1759900 219680000 208030000 210680000 0 0 0 189880000 188290000 178870000 1587300 0 0 281990000 239520000 227890000 877720 0 0 3925 448 3818 74107;74108;74109;74110;74111;74112;74113;74114;74115;74116;74117;74118;74119;74120;74121;74122;74123;74124;74125;74126;74127;74128;74129;74130;74131;74132;74133;74134;74135;74136;74137;74138 45147;45148;45149;45150;45151;45152;45153;45154;45155;45156;45157;45158;45159;45160;45161;45162;45163;45164;45165;45166;45167;45168;45169;45170 45147 24 DVIPFPR Unmodified 842.46504 0.46503826 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.61 34.962 2 0.0018969 16807 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.87 118.06 1438900000 174510000 174790000 167380000 0 0 0 86435000 93532000 94814000 0 0 0 81741000 78465000 71175000 0 0 0 147850000 131110000 132560000 1535500 1510000 1479000 3926 444 3819 74139;74140;74141;74142;74143;74144;74145;74146;74147;74148;74149;74150;74151;74152;74153 45171;45172;45173;45174;45175;45176;45177;45178;45179;45180;45181;45182;45183 45176 13 DVIYHIETYDVTTIR Unmodified 1836.9258 0.92577901 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 41.149 39.317 3 0.00017153 19618 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 71.354 71.354 147900000 0 0 0 0 0 0 46707000 40830000 40176000 0 0 0 0 3629100 0 0 0 0 5009000 7168400 4384200 0 0 0 3927 1191 3820 74154;74155;74156;74157;74158;74159;74160 45184;45185;45186;45187 45184 1 DVLEAMQADSGIR Unmodified 1403.6715 0.67147858 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 1 1 1 2 2 3 1 1 1 40.907 39.346 2;3 6.3002E-24 19064 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 236.32 189.42 10427000000 222750000 206530000 193190000 3281600 2190000 0 1125000000 1090600000 1128500000 0 0 1538500 1066900000 1092200000 1019800000 5390100 4616700 4152600 1100300000 1120400000 1019100000 6654300 6312100 7751200 3928 239 3821 74161;74162;74163;74164;74165;74166;74167;74168;74169;74170;74171;74172;74173;74174;74175;74176;74177;74178;74179;74180;74181;74182;74183;74184;74185;74186;74187;74188;74189;74190;74191;74192;74193;74194 45188;45189;45190;45191;45192;45193;45194;45195;45196;45197;45198;45199;45200;45201;45202;45203;45204;45205;45206;45207;45208;45209;45210;45211;45212;45213;45214;45215;45216;45217;45218;45219;45220 45209 32 DVLEEVIDDLK Unmodified 1286.6606 0.66056277 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 55.584 54.324 2 2.2853E-07 21989 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 163.94 128.58 619260000 10425000 0 0 6043100 0 5517600 34928000 38733000 38498000 26528000 29941000 21188000 40699000 41646000 34522000 8849600 10786000 24174000 67037000 60650000 54498000 22932000 22821000 18839000 3929 1492 3822 74195;74196;74197;74198;74199;74200;74201;74202;74203;74204;74205;74206;74207;74208;74209;74210;74211;74212;74213;74214;74215;74216;74217 45221;45222;45223;45224;45225;45226;45227;45228;45229;45230 45223 10 DVLEEVIDDLKTR Unmodified 1543.8094 0.80935227 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 54.051 53.11 3 1.84E-05 20049 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 100.22 92.046 43265000 0 0 0 0 0 1917500 0 0 0 6475100 5353900 3474600 0 0 0 3595800 5434500 7348600 0 0 0 0 4922000 4743100 3930 1492 3823 74218;74219;74220;74221;74222;74223;74224;74225;74226 45231;45232;45233 45233 3 DVLETLGTDK Unmodified 1089.5554 0.55536941 467 P0A8W5 yqgE UPF0301 protein YqgE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 31.624 30.252 2 0.00058988 14325 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.178 87.397 293960000 41600000 35858000 36121000 0 514120 0 19812000 19914000 19609000 0 0 0 16451000 18210000 19136000 0 0 0 23456000 22818000 20457000 0 0 0 3931 467 3824 74227;74228;74229;74230;74231;74232;74233;74234;74235;74236;74237;74238;74239 45234;45235;45236;45237;45238;45239;45240;45241 45238 5 DVLGIPHDAHCLALLPGSR Unmodified 2040.0575 0.05747866 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 2 1 1 1 2 41.928 40.032 3;4 1.5218E-05 16032 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 86.44 83.342 247250000 25420000 24368000 19331000 4776300 5018600 4485900 7113000 7739900 6634300 21715000 22045000 18402000 0 5210200 5015300 0 0 0 23552000 19784000 8336700 3974600 2754800 11572000 3932 1058 3825 74240;74241;74242;74243;74244;74245;74246;74247;74248;74249;74250;74251;74252;74253;74254;74255;74256;74257;74258;74259;74260;74261;74262;74263;74264;74265;74266;74267;74268;74269;74270;74271 45242;45243;45244;45245;45246;45247;45248;45249;45250;45251 45244 8 DVLGMAQTGSGK Unmodified 1162.5652 0.56522259 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.712 23.629 2 3.0382E-06 10387 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 137.98 129.93 154720000 21456000 17457000 17566000 0 0 0 6383900 0 2653700 2371300 2947400 2304200 8509500 9781800 6875700 0 0 0 16183000 17288000 14759000 2829000 2972900 2376900 3933 544 3826 74272;74273;74274;74275;74276;74277;74278;74279;74280;74281;74282;74283;74284;74285;74286;74287;74288 45252;45253;45254;45255;45256;45257 45255 6 DVLIFNFPMAK Unmodified 1293.6791 0.67913014 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.707 53.255 2 0.00016318 25388 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 109.21 104.76 146970000 3850400 0 0 0 617950 0 14908000 10599000 10606000 0 0 0 14936000 16890000 12416000 0 0 0 23063000 19273000 19814000 0 0 0 3934 1492 3827 74289;74290;74291;74292;74293;74294;74295;74296;74297;74298;74299 45258;45259;45260 45260 1 DVLIRPK Unmodified 839.52289 0.52288749 1623 P60560 guaC GMP reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.328 15.137 2 0.017923 4981 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 86.866 78.526 1570800000 164840000 139710000 133450000 381280 316900 311660 120370000 105300000 112870000 0 0 0 105940000 101130000 109290000 0 0 0 154540000 166570000 155790000 0 0 0 3935 1623 3828 74300;74301;74302;74303;74304;74305;74306;74307;74308;74309;74310;74311;74312;74313;74314 45261;45262;45263;45264;45265;45266;45267;45268;45269;45270;45271;45272 45264 12 DVLIVEDIIDSGNTLSK Unmodified 1829.9622 0.9622241 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.082 53.593 2 1.2101E-10 25436 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 188.48 154.59 940810000 64169000 61536000 0 0 0 0 84093000 82110000 67828000 7033700 6436200 5994800 92602000 97737000 96549000 0 0 0 90665000 87167000 86767000 5729200 0 4396300 3936 537 3829 74315;74316;74317;74318;74319;74320;74321;74322;74323;74324;74325;74326;74327;74328;74329;74330 45273;45274;45275;45276;45277 45277 5 DVLLDINK Unmodified 928.52295 0.52294707 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.719 32.279 2 0.00091102 15427 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.93 98.495 679490000 48907000 52007000 52192000 0 0 0 67030000 69485000 68049000 0 0 0 55658000 49625000 46831000 0 0 0 53109000 61317000 55285000 0 0 0 3937 1253 3830 74331;74332;74333;74334;74335;74336;74337;74338;74339;74340;74341;74342 45278;45279;45280;45281;45282;45283;45284;45285;45286 45281 9 DVLLFVDNIYR Unmodified 1365.7293 0.72925145 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 1 1 2 1 1 1 2 2 1 1 1 1 54.889 53.581 2 7.4277E-15 21465 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 222.18 217.21 5929200000 148200000 119600000 121050000 22186000 26652000 22146000 477710000 444070000 452240000 165310000 157050000 149560000 482840000 466240000 519270000 50205000 54426000 56176000 543060000 608400000 495740000 119710000 112950000 114400000 3938 646 3831 74343;74344;74345;74346;74347;74348;74349;74350;74351;74352;74353;74354;74355;74356;74357;74358;74359;74360;74361;74362;74363;74364;74365;74366;74367;74368;74369;74370;74371;74372 45287;45288;45289;45290;45291;45292;45293;45294;45295;45296;45297;45298;45299;45300;45301;45302;45303;45304;45305;45306;45307;45308;45309;45310 45291 24 DVLLLDVTPLSLGIETMGGVMTTLIAK Unmodified 2799.5377 0.53774079 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.852 54.383 3 8.1267E-06 27015 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 82.849 82.849 115980000 13441000 11662000 10400000 0 0 0 0 9749200 12659000 0 0 0 0 13940000 7714900 0 0 0 21293000 0 15120000 0 0 0 3939 293 3832 74373;74374;74375;74376;74377;74378;74379;74380;74381 45311;45312 45311 1 DVLMEEIVANYHANTK Unmodified 1845.8931 0.89309867 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 3 2 2 2 2 2 2 1 2 2 2 1 1 2 43.677 41.982 2;3 1.3098E-30 20783 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 231.52 226.15 2829300000 152490000 140210000 121280000 0 0 0 249230000 257270000 250770000 32191000 36599000 33429000 296800000 248580000 264560000 0 0 2745100 262470000 233290000 238520000 2182500 3038600 3612200 3940 539 3833 74382;74383;74384;74385;74386;74387;74388;74389;74390;74391;74392;74393;74394;74395;74396;74397;74398;74399;74400;74401;74402;74403;74404;74405;74406;74407;74408;74409;74410;74411;74412;74413;74414;74415;74416;74417 45313;45314;45315;45316;45317;45318;45319;45320;45321;45322;45323;45324;45325;45326;45327;45328;45329;45330;45331;45332;45333;45334;45335;45336;45337;45338;45339;45340 45321 27 DVLMEHVNVLYPMLK Unmodified 1799.9314 0.93139843 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.948 49.692 3 0.00014791 24021 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.91 70.13 141230000 10556000 5246300 5223400 0 0 0 14199000 15061000 8758300 0 0 0 11689000 12953000 12170000 0 0 0 15360000 13360000 16652000 0 0 0 3941 324 3834 74418;74419;74420;74421;74422;74423;74424;74425;74426;74427;74428;74429 45341;45342;45343;45344;45345;45346;45347 45345 7 DVLSTILK Unmodified 887.53278 0.53278348 758 P0ACY9 yebG Uncharacterized protein YebG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 2 2 2 1 2 2 2 44.732 43.28 1;2 0.0015453 20962 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.61 65.893 447010000 31830000 30140000 27083000 475680 0 392350 37090000 36404000 29425000 0 626820 0 38724000 34581000 27707000 0 0 511620 54199000 48730000 49092000 0 0 0 3942 758 3835 74430;74431;74432;74433;74434;74435;74436;74437;74438;74439;74440;74441;74442;74443;74444;74445;74446;74447;74448;74449;74450;74451;74452;74453;74454;74455 45348;45349;45350;45351;45352;45353;45354;45355;45356;45357;45358;45359;45360;45361;45362;45363;45364 45355 12 DVMPEVNAVLEK Unmodified 1342.6803 0.68025235 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 41.459 39.803 2 6.9645E-05 19758 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 102.52 98.937 3856500000 385180000 389790000 343620000 0 0 0 421520000 418520000 418830000 0 0 0 245080000 260860000 236600000 0 0 0 239620000 258500000 238400000 0 0 0 3943 277 3836 74456;74457;74458;74459;74460;74461;74462;74463;74464;74465;74466;74467;74468 45365;45366;45367;45368;45369;45370;45371;45372;45373;45374;45375;45376 45365 12 DVMSLAETLTQAQER Unmodified 1690.8196 0.81959938 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By MS/MS 1 52.646 51.249 2 0.10721 20492 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 60.509 54.667 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3944 1259 3837 74469 45377 45377 1 DVNDEQLALIATMK Unmodified 1559.7865 0.78650834 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.842 47.505 2;3 1.9675E-11 23507 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.69 202.67 1036000000 112950000 115050000 97720000 0 0 0 94712000 89172000 90519000 0 0 0 69195000 56755000 64197000 0 0 0 81845000 84418000 79463000 0 0 0 3945 1170 3838 74470;74471;74472;74473;74474;74475;74476;74477;74478;74479;74480;74481;74482;74483;74484;74485;74486;74487;74488;74489;74490;74491;74492;74493 45378;45379;45380;45381;45382;45383;45384;45385 45378 6 DVNDLPELLK Unmodified 1154.6183 0.61830402 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.837 43.322 2 0.0002821 20166 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 113.71 111.03 1052400000 71668000 70382000 67782000 0 0 0 85295000 88906000 79079000 0 0 0 106310000 102260000 97384000 0 0 0 95802000 96667000 90908000 0 0 0 3946 325 3839 74494;74495;74496;74497;74498;74499;74500;74501;74502;74503;74504;74505 45386;45387;45388;45389;45390;45391;45392;45393;45394;45395;45396;45397 45397 11 DVNQLTPR Unmodified 941.49304 0.49304393 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.21 17.752 2 0.00043484 6142 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 139.28 114.36 1314200000 192050000 181960000 155700000 3047500 3127500 3643800 136940000 136080000 140860000 5550900 3596200 3001500 51598000 43819000 35169000 0 0 978610 72109000 80323000 63966000 0 0 647190 3947 908 3840 74506;74507;74508;74509;74510;74511;74512;74513;74514;74515;74516;74517;74518;74519;74520;74521;74522;74523;74524;74525 45398;45399;45400;45401;45402;45403;45404;45405;45406;45407;45408;45409;45410 45409 13 DVNVFCAPYDLVK Unmodified 1538.7439 0.74391524 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.261 50.079 2 3.897E-06 24309 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.01 123.07 1047300000 71733000 65897000 64231000 0 0 0 67787000 69009000 62340000 1560900 0 0 94729000 89568000 90542000 0 0 1293600 125160000 124650000 118800000 0 0 0 3948 311 3841 74526;74527;74528;74529;74530;74531;74532;74533;74534;74535;74536;74537;74538;74539 45411;45412;45413;45414;45415;45416;45417;45418;45419 45412 9 DVNVPDIGSDEVEVTEILVK Unmodified 2169.1053 0.10525952 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 3 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 54.769 53.338 2;3 3.4513E-18 21365 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 128.01 126.65 9569400000 317920000 325740000 305790000 796200000 924130000 828570000 439020000 323030000 323910000 86369000 64830000 69166000 283830000 222840000 267140000 0 0 0 597020000 550550000 501380000 866980000 757460000 717500000 3949 133 3842 74540;74541;74542;74543;74544;74545;74546;74547;74548;74549;74550;74551;74552;74553;74554;74555;74556;74557;74558;74559;74560;74561;74562;74563;74564;74565;74566;74567;74568;74569;74570;74571;74572;74573;74574;74575;74576;74577;74578;74579;74580;74581;74582;74583 45420;45421;45422;45423;45424;45425;45426;45427;45428;45429;45430;45431;45432;45433;45434;45435;45436;45437;45438;45439;45440;45441;45442;45443;45444;45445;45446;45447 45432 27 DVPDDQR Unmodified 843.37226 0.37226009 1600 P52061 rdgB dITP/XTP pyrophosphatase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 10.712 11.571 2 0.05128 2625 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 58.687 48.937 100670000 0 10398000 0 0 0 0 0 0 13456000 0 0 0 15851000 14549000 0 0 0 0 15106000 17001000 14304000 0 0 0 3950 1600 3843 74584;74585;74586;74587;74588;74589;74590;74591 45448;45449;45450;45451;45452 45452 5 DVPDNVVVGGNPAR Unmodified 1407.7106 0.71064128 1943 P77791 maa Maltose O-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 26.326 25.315 2 6.3836E-06 11345 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 110.88 101.09 253550000 18756000 18838000 19621000 0 0 0 18039000 0 35366000 0 0 0 19755000 21854000 19016000 0 0 0 26458000 26171000 29675000 0 0 0 3951 1943 3844 74592;74593;74594;74595;74596;74597;74598;74599;74600;74601;74602 45453;45454;45455;45456;45457;45458;45459;45460;45461;45462;45463 45457 11 DVPNEYSIYK Unmodified 1226.5819 0.58191851 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.041 27.55 2 0.00076518 10503 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 101.64 101.64 318360000 13284000 10354000 11713000 2563000 2847000 2933400 24407000 23679000 22201000 14134000 12828000 11532000 16921000 17963000 15269000 0 0 0 33327000 29512000 28660000 7702100 8493100 8033600 3952 844 3845 74603;74604;74605;74606;74607;74608;74609;74610;74611;74612;74613;74614;74615;74616;74617;74618;74619;74620;74621;74622;74623 45464;45465;45466;45467;45468;45469;45470;45471;45472;45473;45474;45475;45476;45477;45478 45464 15 DVPTNEGVLGEIALSSLPR Unmodified 1966.0371 0.037120373 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.758 53.31 2 2.8268E-17 26187 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 162.37 157.29 450070000 80562000 85219000 89438000 0 0 0 27072000 22162000 26819000 0 0 0 19504000 14140000 17826000 0 0 0 20220000 25848000 21256000 0 0 0 3953 218 3846 74624;74625;74626;74627;74628;74629;74630;74631;74632;74633;74634;74635 45479;45480 45480 2 DVQAQWFDVR Unmodified 1262.6044 0.60438529 191 P08660 lysC Lysine-sensitive aspartokinase 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 42.71 41.047 2 0.093763 19885 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 43.635 38.851 44066000 5808200 4441700 0 0 0 0 8260300 5117200 0 0 0 0 0 2831800 3598700 0 0 0 4089500 4516000 5402900 0 0 0 3954 191 3847 74636;74637;74638;74639;74640;74641;74642;74643;74644 45481 45481 0 DVQFIEQFR Unmodified 1180.5877 0.58767259 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.444 40.745 2 7.172E-08 20027 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 189.14 185.02 237010000 17554000 16546000 18496000 0 0 0 19937000 18916000 21838000 0 0 0 17028000 16573000 15396000 0 0 0 22833000 29865000 22023000 0 0 0 3955 1787 3848 74645;74646;74647;74648;74649;74650;74651;74652;74653;74654;74655;74656 45482;45483;45484;45485;45486;45487;45488;45489;45490;45491;45492;45493 45488 8 DVQFTYPEQSQQALK Unmodified 1780.8632 0.86317875 1226 P23886 cydC ATP-binding/permease protein CydC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.572 32.932 2 0.00024052 15668 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 96.64 50.159 60690000 6738100 8058000 5699300 0 0 1488700 3095000 2989600 2686100 2255800 1259400 1875900 3324000 4044200 2817500 0 0 0 3888500 4073700 6396600 0 0 0 3956 1226 3849 74657;74658;74659;74660;74661;74662;74663;74664;74665;74666;74667;74668;74669;74670;74671;74672 45494 45494 1 DVQLEQELLEEAQK Unmodified 1670.8363 0.8362953 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 2 1 1 46.567 44.945 2;3 7.0577E-11 22222 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 165.58 110.23 353510000 0 0 0 0 0 0 71986000 59155000 69207000 978570 0 0 44593000 38674000 43347000 0 0 0 10474000 7624300 7473700 0 0 0 3957 1097 3850 74673;74674;74675;74676;74677;74678;74679;74680;74681;74682;74683;74684;74685;74686;74687;74688;74689 45495;45496;45497;45498;45499;45500 45496 4 DVQTAVFEIETQPAMAEK Unmodified 2005.9667 0.96665755 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 47.499 46.153 2 5.4892E-56 22557 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 291.51 286.23 67319000 17319000 18666000 14445000 0 0 0 0 0 0 0 0 0 2153500 2501600 3274100 0 0 0 4342900 0 3514800 0 1102200 0 3958 173 3851 74690;74691;74692;74693;74694;74695;74696;74697;74698 45501;45502;45503 45502 3 DVRPPAELISSMNAQMK Unmodified 1885.939 0.93900301 576 P0AA53 qmcA Protein QmcA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.125 37.447 3 0.011455 14796 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 43.261 38.456 69248000 4023800 4084100 0 1252800 1375200 1448200 8922400 7776800 7582500 0 0 5884000 0 3654400 5077300 1265700 0 0 3230400 4734700 4844300 0 2280400 1810600 3959 576 3852 74699;74700;74701;74702;74703;74704;74705;74706;74707;74708;74709;74710;74711;74712;74713;74714;74715;74716 45504;45505 45505 2 DVRPPAGWEEPGASNNSGDNGSPK Unmodified 2437.0894 0.089443308 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.224 24.104 3 8.4216E-05 8890 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 81.477 81.477 60123000 0 0 0 0 0 0 4856000 8464100 5463600 4483400 4293200 4020500 0 4078300 4983700 0 930960 1047300 6233100 7644800 0 3623900 0 0 3960 595 3853 74717;74718;74719;74720;74721;74722;74723;74724;74725;74726;74727;74728;74729 45506;45507;45508;45509;45510 45506 5 DVRQPEVK Unmodified 969.52434 0.52434406 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 11.547 11.792 2 0.001105 2492 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 129.42 104.5 5399600000 0 0 0 0 2758900 0 0 0 0 331870000 351720000 281080000 0 0 0 1551700000 704740000 614550000 0 0 0 539340000 524030000 497830000 3961 383 3854 74730;74731;74732;74733;74734;74735;74736;74737;74738;74739 45511;45512;45513;45514;45515;45516;45517;45518;45519 45515 9 DVSGEGVQQALLK Unmodified 1342.7092 0.70924429 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.494 30.94 2 9.3525E-07 14480 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.63 113.21 1903000000 127500000 120170000 121820000 3469800 4075900 3652300 158200000 161110000 165930000 16640000 7850500 9530800 144100000 133460000 137130000 0 0 0 202180000 201270000 177150000 0 3100300 4682400 3962 244 3855 74740;74741;74742;74743;74744;74745;74746;74747;74748;74749;74750;74751;74752;74753;74754;74755;74756;74757;74758;74759 45520;45521;45522;45523;45524;45525;45526 45525 7 DVSIMPFK Unmodified 935.47864 0.47863942 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.704 39.073 2 0.0086779 18944 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.297 72.967 9266700000 736820000 720490000 676310000 45801000 44818000 42828000 880160000 826490000 804220000 143430000 149410000 136380000 535250000 528180000 511690000 18357000 10183000 15816000 745940000 757890000 747690000 65867000 59544000 63137000 3963 293 3856 74760;74761;74762;74763;74764;74765;74766;74767;74768;74769;74770;74771;74772;74773;74774;74775;74776;74777;74778;74779;74780;74781;74782;74783;74784 45527;45528;45529;45530;45531;45532;45533;45534;45535;45536;45537;45538;45539;45540;45541;45542;45543;45544;45545;45546;45547;45548;45549;45550;45551;45552 45540 26 DVSIMPFK Oxidation (M) 951.47355 0.47355404 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 1 1 1 1 2 2 2 2 2 2 1 2 2 2 2 1 32.328 30.806 2 0.086411 15012 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 56.011 47.681 222510000 13427000 13559000 11536000 772380 1209200 613480 31659000 36986000 9989500 7624100 6342300 6330900 11650000 9577300 9319700 0 0 355580 14452000 17898000 16549000 0 1478300 1183500 3964 293 3856 74785;74786;74787;74788;74789;74790;74791;74792;74793;74794;74795;74796;74797;74798;74799;74800;74801;74802;74803;74804;74805;74806;74807;74808;74809;74810;74811;74812;74813;74814;74815;74816;74817;74818;74819 45553;45554;45555;45556;45557;45558;45559;45560 45558 8 DVSIPTVEELLAAHNPWAK Unmodified 2089.0844 0.084404917 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 54.822 53.38 2;3 4.3388E-29 26363 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 204.32 199.15 2160700000 305220000 302600000 253690000 0 1609300 2656400 153020000 157470000 143660000 0 0 0 151590000 114120000 142460000 0 0 0 138860000 152880000 135910000 0 0 4930500 3965 549 3857 74820;74821;74822;74823;74824;74825;74826;74827;74828;74829;74830;74831;74832;74833;74834;74835;74836;74837;74838;74839;74840;74841;74842;74843;74844;74845;74846 45561;45562;45563;45564;45565;45566;45567;45568;45569;45570;45571;45572;45573;45574;45575;45576;45577;45578;45579;45580;45581;45582;45583 45576 23 DVTAGAIQSDINR Unmodified 1358.679 0.6790068 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 26.635 25.73 2 9.1903E-07 11720 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 129.89 109.9 71403000 27133000 22042000 22229000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3966 35 3858 74847;74848;74849;74850 45584;45585;45586;45587 45584 4 DVTEEEGNIVIYTEPTDLHK Unmodified 2301.1012 0.10123677 413 P0A8A2 yeeN Probable transcriptional regulatory protein YeeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 38.53 36.856 2;3 5.9709E-68 18092 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 376.01 375.06 1841400000 93763000 74405000 72123000 0 0 0 193520000 201740000 209110000 0 0 0 138140000 129850000 127820000 0 0 0 215370000 203170000 182430000 0 0 0 3967 413 3859 74851;74852;74853;74854;74855;74856;74857;74858;74859;74860;74861;74862;74863;74864;74865;74866;74867;74868;74869;74870;74871;74872;74873;74874 45588;45589;45590;45591;45592;45593;45594;45595;45596;45597;45598;45599;45600;45601;45602;45603;45604;45605;45606;45607;45608;45609 45590 22 DVTGHAIGAYIR Unmodified 1271.6622 0.66223452 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 24.93 24.016 3 0.0043545 10937 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 67.08 56.976 209430000 0 29606000 28593000 0 0 0 0 0 37238000 0 0 0 0 13146000 18971000 0 0 0 30154000 25153000 26571000 0 0 0 3968 731 3860 74875;74876;74877;74878;74879;74880;74881;74882;74883;74884 45610;45611;45612;45613;45614;45615 45611 6 DVTIADLFAK Unmodified 1091.5863 0.58627561 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.312 51.065 2 0.00049378 25171 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.442 85.794 3989400000 317740000 312580000 320410000 0 0 0 528200000 503290000 506130000 0 0 0 234610000 241370000 243700000 0 0 0 262660000 252210000 266510000 0 0 0 3969 277 3861 74885;74886;74887;74888;74889;74890;74891;74892;74893;74894;74895;74896 45616;45617;45618;45619;45620;45621;45622;45623;45624;45625;45626;45627 45617 12 DVTIEEFNAVAHELDPIVAK Unmodified 2209.1267 0.12666366 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 54.52 53.044 3 2.7903E-07 26334 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.89 100.03 449100000 74916000 73885000 68900000 0 0 0 53794000 47915000 40130000 0 0 0 0 0 0 0 0 0 31503000 32249000 25808000 0 0 0 3970 278 3862 74897;74898;74899;74900;74901;74902;74903;74904;74905 45628;45629;45630;45631 45629 4 DVTIIDDGK Unmodified 974.49204 0.49204087 1039 P0C0L7 proP Proline/betaine transporter yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.087 22.979 2 0.0010908 8104 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 93.429 59.632 221250000 0 0 10501000 3441600 4094700 3505500 28845000 33575000 32661000 11031000 11352000 8388700 0 13736000 0 0 0 0 25442000 19432000 12590000 2658600 0 0 3971 1039 3863 74906;74907;74908;74909;74910;74911;74912;74913;74914;74915;74916;74917;74918;74919;74920 45632;45633 45632 1 DVTIIDDGKLR Unmodified 1243.6772 0.67721588 1039 P0C0L7 proP Proline/betaine transporter yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.111 25.561 3 0.0013183 9449 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 74.841 70.501 34753000 0 0 0 2515700 2737300 2392600 0 0 0 7772000 5154500 7519800 0 0 0 0 0 0 0 0 0 1833200 2604200 2223300 3972 1039 3864 74921;74922;74923;74924;74925;74926;74927;74928;74929 45634;45635;45636 45635 3 DVTLTLPVGLFTCITGVSGSGK Unmodified 2221.1664 0.16641999 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By matching By MS/MS 2 2 2 55.947 56.002 2;3 0.011254 22020 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 45.084 18.372 53270000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16687000 18394000 18189000 0 0 0 0 0 0 3973 222 3865 74930;74931;74932;74933;74934;74935 45637;45638 45637 1 DVTPDATLAVADR Unmodified 1342.6729 0.67285879 901 P0AF03 mog Molybdopterin adenylyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.591 30.234 2 9.767E-06 14160 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.71 119.93 691770000 81774000 81497000 70632000 0 0 0 60173000 53775000 58686000 0 0 0 44695000 39545000 45144000 0 0 0 47466000 52083000 56297000 0 0 0 3974 901 3866 74936;74937;74938;74939;74940;74941;74942;74943;74944;74945;74946;74947 45639;45640 45640 2 DVTPQPPQTPQALLEFAK Unmodified 1979.0364 0.036392091 1837 P76223 ynjB Protein YnjB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 51.109 49.847 2 0.00010607 23361 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 79.466 74.483 46253000 0 0 0 0 0 0 5270100 4880200 7013300 0 0 0 4652000 4238100 3856700 0 0 0 6101900 4661800 5579100 0 0 0 3975 1837 3867 74948;74949;74950;74951;74952;74953;74954;74955;74956 45641 45641 1 DVTSLLEDPK Unmodified 1115.571 0.57101948 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.356 35.682 2 0.00051539 17472 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.033 90.465 1888200000 153330000 145460000 127450000 0 0 0 155610000 168150000 177450000 0 0 0 138940000 116840000 122340000 0 0 0 249120000 179360000 154100000 0 0 0 3976 1736 3868 74957;74958;74959;74960;74961;74962;74963;74964;74965;74966;74967;74968 45642;45643;45644;45645;45646;45647;45648;45649 45643 8 DVTTGDTLCDPDAPIILER Unmodified 2100.0045 0.0044996155 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 47.806 46.245 2;3 6.3826E-37 22729 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 300.07 296.94 17768000000 1608100000 1543200000 1384500000 6490400 7648100 7708800 1266800000 1387100000 1223200000 14463000 13365000 12816000 1403800000 1319000000 1255200000 0 0 0 1712200000 1804900000 1771700000 10277000 12085000 2976400 3977 264 3869 74969;74970;74971;74972;74973;74974;74975;74976;74977;74978;74979;74980;74981;74982;74983;74984;74985;74986;74987;74988;74989;74990;74991;74992;74993;74994;74995;74996;74997;74998;74999;75000;75001;75002;75003;75004;75005;75006;75007 45650;45651;45652;45653;45654;45655;45656;45657;45658;45659;45660;45661;45662;45663;45664;45665;45666;45667;45668;45669;45670;45671;45672;45673;45674;45675;45676;45677;45678;45679 45668 30 DVVDAAVALR Unmodified 1027.5662 0.56620887 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 1 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 2 1 34.857 33.397 2 1.8844E-05 11488 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 150.05 128.53 436660000 40172000 6656900 40824000 2929200 2497300 0 17882000 19088000 16419000 4128500 6293400 4656100 7063600 7405500 8422500 90387000 62399000 59615000 9876500 7936300 19405000 0 2602500 0 3978 515 3870 75008;75009;75010;75011;75012;75013;75014;75015;75016;75017;75018;75019;75020;75021;75022;75023;75024;75025;75026;75027;75028;75029;75030;75031;75032;75033;75034;75035 45680;45681;45682;45683;45684;45685;45686;45687;45688;45689;45690;45691;45692 45681 10 DVVFQYEPVAAGLDYEATLQEEKR Unmodified 2769.3497 0.34974032 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.892 49.8 3 1.2125E-15 19673 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 152.13 150 75451000 0 0 0 0 0 0 0 0 0 6795700 5161900 2158700 0 0 0 16023000 7513900 0 0 0 0 13939000 11320000 12539000 3979 1448 3871 75036;75037;75038;75039;75040;75041;75042;75043 45693;45694;45695;45696 45695 4 DVVIGETITVGELANK Unmodified 1656.8934 0.89341625 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 46.537 44.885 2 1.5822E-06 22113 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.86 122.24 83318000 10656000 6183800 6049100 2059900 1676700 1624600 4213000 5094800 4727400 4586500 2763100 2175100 6915500 5827400 5189700 0 0 0 3595100 5953700 4026100 0 0 0 3980 297 3872 75044;75045;75046;75047;75048;75049;75050;75051;75052;75053;75054;75055;75056;75057;75058;75059;75060;75061;75062 45697;45698;45699;45700;45701;45702;45703;45704 45701 5 DVVIGMGACTDSK Unmodified 1351.6112 0.61118651 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 28.435 27.115 2 3.77E-05 12712 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.55 100.55 113240000 0 4758000 5205700 0 0 0 23300000 24289000 19911000 0 0 0 0 5748900 0 0 0 0 10124000 8966500 10941000 0 0 0 3981 669 3873 75063;75064;75065;75066;75067;75068;75069;75070;75071 45705;45706;45707;45708;45709;45710 45705 6 DVVIISTLR Unmodified 1014.6073 0.6073454 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.849 36.967 2 0.00014849 17146 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 131.06 113.68 146140000 7075000 3480300 7108300 0 0 0 18550000 19179000 20749000 1928800 2920200 1994200 8623800 8018100 6727500 0 0 0 15702000 11047000 11233000 669910 551870 576840 3982 122 3874 75072;75073;75074;75075;75076;75077;75078;75079;75080;75081;75082;75083;75084;75085;75086;75087;75088;75089 45711;45712;45713;45714;45715;45716 45716 6 DVVLLTGDKPGSEPETQALCQLIHR Unmodified 2775.4225 0.42252811 751 P0ACV6 mpaA Protein MpaA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 44.599 43.084 3;4 6.9814E-07 20967 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.29 94.99 243420000 40978000 38241000 33033000 0 0 0 22313000 17273000 15688000 0 0 0 10415000 11883000 9095400 0 0 0 12432000 18723000 13344000 0 0 0 3983 751 3875 75090;75091;75092;75093;75094;75095;75096;75097;75098;75099;75100;75101;75102;75103;75104;75105;75106;75107;75108;75109;75110;75111;75112;75113 45717;45718;45719;45720;45721;45722 45721 2 DVVLVDAGLK Unmodified 1027.5914 0.59136099 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.304 34.544 2 0.0012791 16662 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 85.676 65.889 1154100000 139780000 143590000 117520000 704630 838890 686940 60384000 62301000 60849000 2478000 1724600 1435700 95138000 93340000 93952000 0 0 0 87560000 94402000 96217000 1173700 0 0 3984 990 3876 75114;75115;75116;75117;75118;75119;75120;75121;75122;75123;75124;75125;75126;75127;75128;75129;75130;75131;75132 45723;45724;45725;45726;45727;45728;45729;45730;45731;45732;45733;45734 45726 12 DVVSIPVTVK Unmodified 1055.6227 0.62266112 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.96 34.403 2 0.0015661 16533 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.998 73.531 211980000 25217000 26172000 21498000 0 0 0 12456000 13500000 13180000 0 0 0 14808000 12404000 19655000 0 0 0 15235000 18843000 19009000 0 0 0 3985 1399 3877 75133;75134;75135;75136;75137;75138;75139;75140;75141;75142;75143;75144 45735 45735 1 DVVTQPQA Unmodified 856.42905 0.42904669 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 19.967 20.168 2 0.0031954 7614 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.163 90.178 603330000 0 0 0 3514700 0 0 52418000 51174000 43777000 12146000 8076100 10828000 88893000 86080000 84132000 0 0 0 158470000 0 0 3820400 0 0 3986 480 3878 75145;75146;75147;75148;75149;75150;75151;75152;75153;75154;75155;75156;75157 45736;45737;45738;45739;45740;45741 45740 6 DVVVYPHMVIPLFVGR Unmodified 1840.0069 0.0069466389 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 54.169 52.871 2;3 2.9653E-10 20711 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 107.61 106.68 1323800000 97510000 70410000 88828000 0 1422900 0 78372000 76882000 72819000 8966100 9633200 0 107260000 94075000 91263000 80706000 61764000 68933000 111850000 90746000 99487000 5637600 2736800 4543800 3987 536 3879 75158;75159;75160;75161;75162;75163;75164;75165;75166;75167;75168;75169;75170;75171;75172;75173;75174;75175;75176;75177;75178;75179;75180;75181;75182;75183;75184;75185;75186;75187;75188;75189 45742;45743;45744;45745;45746;45747;45748;45749;45750;45751;45752;45753;45754;45755;45756;45757;45758;45759 45742 17 DVWGYIALNHFK Unmodified 1461.7405 0.74048484 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.318 45.928 2;3 2.9964E-08 22415 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 198.65 198.65 858790000 107120000 102970000 82841000 0 0 0 41343000 39057000 39509000 0 0 0 65422000 68352000 71380000 0 0 0 84190000 81591000 75015000 0 0 0 3988 638 3880 75190;75191;75192;75193;75194;75195;75196;75197;75198;75199;75200;75201;75202;75203;75204;75205;75206;75207;75208;75209;75210;75211;75212;75213 45760;45761;45762;45763;45764;45765;45766;45767;45768;45769;45770;45771;45772;45773;45774;45775;45776;45777;45778;45779;45780;45781;45782;45783 45767 24 DVYAAAR Unmodified 764.3817 0.38170256 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.798 13.672 2 0.0075261 3875 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 90.939 74.234 700160000 0 0 134470000 0 0 0 71373000 79911000 70597000 0 0 0 77939000 67946000 62822000 0 0 0 47856000 47354000 39889000 0 0 0 3989 1947 3881 75214;75215;75216;75217;75218;75219;75220;75221;75222;75223 45784;45785 45785 2 DVYGIDDALR Unmodified 1135.551 0.55095274 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 38.054 36.381 2 3.2853E-05 16899 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 143.73 115.52 334520000 41406000 34431000 39006000 0 0 0 41130000 41016000 43680000 0 0 0 24532000 22687000 19450000 0 0 0 0 0 27185000 0 0 0 3990 328 3882 75224;75225;75226;75227;75228;75229;75230;75231;75232;75233;75234 45786;45787;45788;45789;45790 45790 5 DWAAADAAR Unmodified 945.43044 0.43044367 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.846 20.315 2 0.00025041 7813 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.18 116.64 639480000 56675000 46866000 42166000 0 0 0 49256000 43943000 51779000 0 0 0 57200000 54939000 0 0 0 0 80409000 72378000 83868000 0 0 0 3991 1188 3883 75235;75236;75237;75238;75239;75240;75241;75242;75243;75244;75245;75246 45791;45792;45793;45794;45795;45796;45797;45798;45799;45800;45801 45797 11 DWADRPGEENKVEAITMR Unmodified 2116.0008 0.0007516416 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.467 26.047 4 0.030953 9415 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 39.91 39.803 185560000 9016300 8407400 8105500 0 0 0 16596000 16705000 18366000 7024300 5259500 7321000 15078000 0 0 0 0 0 18418000 23373000 19754000 3935000 4966600 3233100 3992 1365 3884 75247;75248;75249;75250;75251;75252;75253;75254;75255;75256;75257;75258;75259;75260;75261;75262 45802;45803 45802 2 DWDVNAAAVR Unmodified 1115.536 0.53597137 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.036 29.442 2 4.7736E-06 14149 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 156.4 152.47 2451300000 300140000 287610000 238250000 1620300 1427700 1815000 286460000 285520000 323550000 1626300 910390 883770 131470000 134020000 0 0 0 0 133760000 165090000 156460000 0 0 634260 3993 1086 3885 75263;75264;75265;75266;75267;75268;75269;75270;75271;75272;75273;75274;75275;75276;75277;75278;75279;75280 45804;45805;45806;45807;45808;45809;45810;45811;45812;45813;45814 45805 6 DWEDGYR Unmodified 939.37226 0.37226009 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.213 23.204 2 0.0046378 9810 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 102.98 44.319 164320000 8286400 6863000 5384100 391250 372530 0 15174000 14081000 14474000 3024500 2460200 1860300 13057000 11951000 11895000 0 0 0 14337000 12197000 19939000 3305800 2796500 2466300 3994 205 3886 75281;75282;75283;75284;75285;75286;75287;75288;75289;75290;75291;75292;75293;75294;75295;75296;75297;75298;75299;75300 45815;45816 45815 2 DWFDYDAVK Unmodified 1157.5029 0.50293991 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.252 43.637 2 0.0025982 21453 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 84.568 83.196 1023200000 102520000 85609000 82299000 0 0 0 215540000 213630000 232400000 1009700 1219800 952380 12580000 11110000 11544000 0 0 0 17403000 18337000 17026000 0 0 0 3995 1191 3887 75301;75302;75303;75304;75305;75306;75307;75308;75309;75310;75311;75312;75313;75314;75315 45817;45818;45819;45820;45821;45822;45823;45824;45825;45826;45827;45828 45819 8 DWFDYDAVKDNVTDKNELR Unmodified 2342.0815 0.081504383 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 39.335 37.525 4 4.0503E-14 18505 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.16 131.42 95331000 11149000 0 9757600 0 1517500 0 23084000 20873000 20717000 0 0 0 0 0 0 0 0 0 4120800 4112900 0 0 0 0 3996 1191 3888 75316;75317;75318;75319;75320;75321;75322;75323 45829;45830 45830 2 DWFQLSLK Unmodified 1035.5389 0.53893149 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.284 50.036 2 0.0014295 24613 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 108.92 81.22 1625700000 167640000 154100000 142610000 0 0 0 145080000 130520000 139080000 0 0 0 108730000 112370000 100460000 0 0 0 150250000 146940000 127900000 0 0 0 3997 94 3889 75324;75325;75326;75327;75328;75329;75330;75331;75332;75333;75334;75335 45831;45832;45833;45834;45835;45836;45837;45838;45839;45840;45841;45842 45833 12 DWGVDVFTVPGK Unmodified 1318.6558 0.65575216 126 P06709 birA Bifunctional ligase/repressor BirA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 51.574 50.408 2 0.00090958 23658 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 78.655 67.504 61040000 10489000 8365700 7296100 0 0 0 0 0 0 0 0 0 10238000 7251200 7417500 0 0 0 0 0 9983100 0 0 0 3998 126 3890 75336;75337;75338;75339;75340;75341;75342 45843 45843 1 DWGYQLAR Unmodified 1007.4825 0.48247924 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 33.327 31.814 2 0.00079188 15414 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.98 119.59 12953000000 1695000000 1762500000 1673600000 1745700 1288600 1065700 701860000 673960000 680490000 0 611150 0 720260000 721470000 755670000 0 0 0 1164800000 1200100000 1197200000 0 1096300 0 3999 179 3891 75343;75344;75345;75346;75347;75348;75349;75350;75351;75352;75353;75354;75355;75356;75357;75358;75359;75360;75361;75362;75363 45844;45845;45846;45847;45848;45849;45850;45851;45852;45853;45854;45855 45844 12 DWIANPDLVAR Unmodified 1268.6513 0.65133548 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 42.03 40.327 2 5.1922E-06 20066 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 152.34 144.42 883320000 28455000 23258000 21977000 0 531290 0 103290000 111890000 94669000 0 0 0 83510000 92347000 73552000 0 0 0 76498000 80551000 92800000 0 0 0 4000 1890 3892 75364;75365;75366;75367;75368;75369;75370;75371;75372;75373;75374;75375;75376 45856;45857;45858;45859;45860;45861;45862;45863 45856 7 DWLNVTPAQR Unmodified 1198.6095 0.60947067 1199 P22525 ycbB Probable L,D-transpeptidase YcbB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 36.748 34.916 2 0.093231 13714 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 53.968 43.144 31879000 0 2876400 2474500 0 0 0 6626200 7948200 6539600 0 1948300 0 0 0 0 0 0 0 3465800 0 0 0 0 0 4001 1199 3893 75377;75378;75379;75380;75381;75382;75383 45864;45865 45864 0 DWLQAIESVIR Unmodified 1328.7089 0.70885036 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 1 1 1 2 1 2 2 2 2 2 2 2 55.848 54.405 2;3 6.5618E-11 20087 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 233.46 218.31 7226000000 123720000 123620000 112880000 1095100000 890720000 1069400000 98463000 67524000 104060000 56315000 49590000 56747000 131010000 125290000 128980000 0 0 0 192690000 201120000 178390000 742980000 839690000 837710000 4002 939 3894 75384;75385;75386;75387;75388;75389;75390;75391;75392;75393;75394;75395;75396;75397;75398;75399;75400;75401;75402;75403;75404;75405;75406;75407;75408;75409;75410;75411;75412;75413;75414;75415;75416;75417;75418;75419;75420 45866;45867;45868;45869;45870;45871;45872;45873;45874;45875;45876;45877;45878;45879;45880;45881;45882;45883;45884;45885;45886;45887;45888;45889;45890;45891;45892;45893;45894;45895;45896;45897;45898;45899;45900;45901 45886 35 DWLQAIESVIREEGVER Unmodified 2028.0276 0.027618319 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 6 4 4 1 1 2 3 2 1 1 2 2 2 1 1 3 4 3 55.577 54.369 2;3;4 7.8074E-75 21834 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 377.19 364.92 44199000000 0 0 0 7417100000 7542800000 6514900000 0 4599400 3745200 505130000 594460000 607800000 0 6375900 3475200 305960000 382180000 347000000 9832700 0 10978000 7211100000 6387800000 6343400000 4003 939 3895 75421;75422;75423;75424;75425;75426;75427;75428;75429;75430;75431;75432;75433;75434;75435;75436;75437;75438;75439;75440;75441;75442;75443;75444;75445;75446;75447;75448;75449;75450;75451;75452;75453;75454;75455;75456;75457;75458;75459;75460;75461;75462;75463 45902;45903;45904;45905;45906;45907;45908;45909;45910;45911;45912;45913;45914;45915;45916;45917;45918;45919;45920;45921;45922;45923;45924;45925;45926;45927;45928 45911 27 DWLYVEDHAR Unmodified 1302.5993 0.59929991 1496;1308 P27830;P37759 rffG;rfbB dTDP-glucose 4,6-dehydratase 2;dTDP-glucose 4,6-dehydratase 1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 30.944 29.587 2;3 4.8192E-06 13751 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.66 129.87 2419000000 105330000 91596000 78023000 0 0 0 203400000 209410000 201470000 0 0 0 218460000 197990000 192730000 0 0 0 284380000 330680000 305470000 0 0 0 4004 1308;1496 3896 75464;75465;75466;75467;75468;75469;75470;75471;75472;75473;75474;75475;75476;75477;75478;75479;75480;75481;75482;75483;75484;75485;75486;75487 45929;45930;45931;45932;45933;45934;45935;45936;45937;45938;45939;45940;45941;45942;45943;45944;45945;45946;45947;45948;45949;45950;45951 45939 21 DWNGLGTSVMEVSHR Unmodified 1686.7784 0.77840327 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 37.932 36.069 2;3 6.8647E-27 17788 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 229.29 222.76 1410600000 218900000 206770000 202560000 34203000 31575000 6372100 72707000 79724000 78345000 34035000 35089000 32323000 57547000 37863000 41710000 0 0 0 82789000 79099000 76946000 2007300 0 0 4005 1211 3897 75488;75489;75490;75491;75492;75493;75494;75495;75496;75497;75498;75499;75500;75501;75502;75503;75504;75505;75506;75507;75508;75509;75510;75511;75512;75513;75514;75515;75516;75517;75518;75519;75520;75521;75522;75523;75524 45952;45953;45954;45955;45956;45957;45958;45959;45960;45961;45962;45963;45964;45965;45966;45967;45968;45969;45970;45971;45972;45973;45974;45975;45976;45977;45978;45979;45980 45959 28 DWPFFSTR Unmodified 1054.4872 0.48723027 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.046 49.791 2 0.00065993 24644 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.57 125.17 976390000 118260000 126200000 94020000 1015800 881310 643970 102410000 101900000 96358000 0 0 0 51570000 46916000 51122000 0 0 0 59809000 63172000 62110000 0 0 0 4006 43 3898 75525;75526;75527;75528;75529;75530;75531;75532;75533;75534;75535;75536;75537;75538;75539 45981;45982;45983;45984;45985;45986;45987;45988;45989;45990;45991;45992 45981 12 DWQPEVK Unmodified 900.43413 0.43413207 996 P0AG86 secB Protein-export protein SecB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 21.899 21.787 1;2 0.0028071 6569 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 110.61 105.79 12804000000 728450000 696030000 567280000 57077000 53066000 58962000 803330000 815680000 818560000 161960000 138280000 74468000 817530000 795410000 549390000 1228100000 892640000 946100000 731270000 792790000 811750000 72214000 89785000 104100000 4007 996 3899 75540;75541;75542;75543;75544;75545;75546;75547;75548;75549;75550;75551;75552;75553;75554;75555;75556;75557;75558;75559;75560;75561;75562;75563;75564;75565;75566;75567;75568;75569;75570;75571;75572;75573;75574;75575;75576;75577;75578;75579;75580;75581;75582;75583;75584;75585;75586;75587;75588 45993;45994;45995;45996;45997;45998;45999;46000;46001;46002;46003;46004;46005;46006;46007;46008;46009;46010;46011;46012;46013;46014;46015;46016;46017 46008 24 DWSGSYETAHYMLGTAAGPHPYPTIVR Unmodified 2976.3865 0.38647695 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 43.47 41.814 3;4 1.7962E-66 20462 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 256.75 254.28 1239600000 315610000 274600000 246340000 0 0 0 38616000 49859000 46133000 1158300 7352700 1355300 34676000 37027000 33428000 0 0 0 54272000 50732000 48413000 0 0 0 4008 405 3900 75589;75590;75591;75592;75593;75594;75595;75596;75597;75598;75599;75600;75601;75602;75603;75604;75605;75606;75607;75608;75609;75610;75611;75612;75613;75614;75615;75616 46018;46019;46020;46021;46022;46023;46024;46025;46026;46027;46028;46029;46030 46025 13 DWTIEQITR Unmodified 1160.5826 0.58258722 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.774 39.1 2 8.7157E-08 19089 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 186.13 182.72 17573000000 3015900000 2868700000 2781800000 0 2114600 1659600 1378600000 1327900000 1260100000 0 0 0 875730000 807970000 789420000 0 0 0 826680000 841940000 794900000 0 0 0 4009 397 3901 75617;75618;75619;75620;75621;75622;75623;75624;75625;75626;75627;75628;75629;75630 46031;46032;46033;46034;46035;46036;46037;46038;46039;46040;46041;46042;46043 46037 13 DWVVNER Unmodified 916.44028 0.44028008 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.029 23.138 2 0.0071093 9900 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 92.677 85.447 9110700000 2415600000 2281000000 2494900000 6338800 5834500 6425800 276140000 270480000 249510000 0 0 1213100 152290000 129240000 126760000 643990 0 0 260590000 242840000 189410000 847000 579960 0 4010 1217 3902 75631;75632;75633;75634;75635;75636;75637;75638;75639;75640;75641;75642;75643;75644;75645;75646;75647;75648;75649 46044;46045;46046;46047;46048;46049;46050;46051;46052;46053;46054;46055 46052 12 DWWPNQLR Unmodified 1113.5356 0.53557744 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.396 41.803 2 0.0023522 19450 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 101.21 101.21 1791100000 199200000 179500000 153400000 874900 1028900 0 236280000 229870000 215420000 0 1929500 0 84122000 97619000 83927000 0 0 0 105660000 98713000 103580000 0 0 0 4011 1086 3903 75650;75651;75652;75653;75654;75655;75656;75657;75658;75659;75660;75661;75662;75663;75664 46056;46057;46058;46059;46060;46061;46062;46063;46064;46065;46066;46067 46067 12 DWYVVDATGK Unmodified 1152.5451 0.54513908 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.081 35.451 2 7.0119E-05 12662 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 133.23 132.73 4066900000 566170000 498240000 460210000 17482000 14551000 14213000 186090000 177180000 165770000 37881000 34421000 31438000 216770000 207120000 204150000 51427000 29892000 36015000 328540000 336800000 327780000 39308000 39821000 45629000 4012 569 3904 75665;75666;75667;75668;75669;75670;75671;75672;75673;75674;75675;75676;75677;75678;75679;75680;75681;75682;75683;75684;75685;75686;75687;75688;75689;75690 46068;46069;46070;46071;46072;46073;46074;46075;46076;46077;46078;46079;46080;46081;46082;46083;46084;46085;46086;46087;46088;46089;46090;46091 46070 23 DYAASMEQR Unmodified 1069.4499 0.44985848 802 P0ADS2 zapA Cell division protein ZapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.424 17.212 2 2.35E-11 6115 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 214.11 214.11 472680000 37961000 36364000 34206000 0 0 0 43870000 41815000 39292000 0 0 0 41622000 36416000 41147000 0 0 0 41464000 41539000 36987000 0 0 0 4013 802 3905 75691;75692;75693;75694;75695;75696;75697;75698;75699;75700;75701;75702 46092;46093;46094;46095;46096;46097;46098;46099;46100;46101 46092 10 DYADNHDYINALANSVR Unmodified 1949.8868 0.88676774 1223 P23871 hemH Ferrochelatase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.331 38.328 3 0.064607 15237 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 34.274 33.945 15798000 0 1931600 0 1228800 891710 1054500 0 0 0 2881000 2571300 2271100 0 0 0 0 0 0 0 0 2312400 655730 0 0 4014 1223 3906 75703;75704;75705;75706;75707;75708;75709;75710;75711 46102 46102 1 DYAELLESVADRPDAEMLQTMLLR Unmodified 2778.3568 0.35681631 1181 P21499 rnr Ribonuclease R yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 55.545 54.056 3 5.9617E-11 26771 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 132.84 131.22 110560000 32107000 27290000 25429000 0 0 0 3992800 2993400 2340400 0 0 0 0 16405000 0 0 0 0 0 0 0 0 0 0 4015 1181 3907 75712;75713;75714;75715;75716;75717;75718 46103 46103 1 DYAGFPVGGQFLVSENPDVVNHHLAK Unmodified 2809.3824 0.38237785 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 43.645 41.958 3;4 1.8255E-15 16503 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 138.93 135.96 847070000 0 0 9263300 0 6558700 0 20613000 20556000 25741000 38155000 31354000 4247700 32352000 42521000 30020000 0 11954000 12937000 123520000 115180000 113290000 70548000 67440000 70833000 4016 1435 3908 75719;75720;75721;75722;75723;75724;75725;75726;75727;75728;75729;75730;75731;75732;75733;75734;75735;75736;75737;75738;75739;75740;75741;75742;75743;75744;75745;75746;75747;75748;75749;75750;75751 46104;46105;46106;46107;46108;46109;46110;46111;46112;46113;46114;46115;46116;46117;46118;46119;46120;46121;46122;46123;46124 46113 21 DYAGVDEGMNGLSTR Unmodified 1583.6886 0.68858521 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.763 30.374 2 3.0372E-27 14392 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 240.05 240.05 208160000 42380000 38515000 39117000 1001300 1052000 1561100 19129000 17683000 20000000 0 0 0 3870700 5188300 3285200 0 0 0 5201000 5039300 5134600 0 0 0 4017 757 3909 75752;75753;75754;75755;75756;75757;75758;75759;75760;75761;75762;75763;75764;75765;75766 46125;46126;46127;46128;46129 46127 5 DYAYTIGR Unmodified 957.4556 0.45559579 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.516 23.716 2 0.000847 10749 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.65 82.999 630540000 56275000 54787000 47459000 0 0 0 68169000 65762000 55462000 0 0 0 45668000 37533000 31053000 2215200 1288800 1236800 57439000 56633000 49558000 0 0 0 4018 948 3910 75767;75768;75769;75770;75771;75772;75773;75774;75775;75776;75777;75778;75779;75780;75781 46130;46131;46132;46133;46134;46135 46130 4 DYECLCGK Unmodified 1043.4052 0.40521648 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 17.717 18.147 2 0.0021719 4917 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 102.72 102.72 4136900000 98194000 96180000 87626000 1465600 1509900 1227300 101150000 110150000 109400000 262280000 237290000 209000000 103360000 100400000 95700000 410590000 401960000 444590000 143120000 147020000 160410000 281590000 270470000 262230000 4019 458 3911 75782;75783;75784;75785;75786;75787;75788;75789;75790;75791;75792;75793;75794;75795;75796;75797;75798;75799;75800;75801;75802;75803;75804;75805;75806 46136;46137;46138;46139;46140;46141;46142;46143;46144;46145;46146;46147;46148;46149;46150;46151;46152;46153;46154;46155 46137 15 DYEEDFK Unmodified 944.37634 0.37634241 798 P0ADP9 yihD Protein YihD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.859 21.149 2 0.02496 8515 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.138 69.132 1020200000 155230000 129660000 123220000 0 0 0 94352000 84522000 87805000 0 0 751980 58094000 53256000 62163000 0 0 0 52747000 63098000 55288000 0 0 0 4020 798 3912 75807;75808;75809;75810;75811;75812;75813;75814;75815;75816;75817;75818;75819 46156;46157;46158;46159;46160;46161;46162;46163;46164;46165;46166;46167 46158 12 DYEFASK Unmodified 858.37595 0.37594848 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 18.43 19.045 2 0.0078594 7138 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.55 89.55 1123400000 97165000 85933000 83086000 1361000 0 0 72166000 76667000 51437000 0 0 0 101600000 85890000 88885000 0 0 0 126370000 126280000 126540000 0 0 0 4021 170 3913 75820;75821;75822;75823;75824;75825;75826;75827;75828;75829;75830;75831;75832 46168;46169;46170;46171;46172;46173;46174;46175;46176;46177;46178;46179 46172 12 DYEKTITTR Unmodified 1125.5666 0.5666028 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 13.504 14.327 3 0.020669 4497 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 60.91 54.807 231230000 0 64205000 0 0 0 0 52423000 44150000 34693000 0 0 0 0 35762000 0 0 0 0 0 0 0 0 0 0 4022 1877 3914 75833;75834;75835;75836;75837 46180;46181;46182 46181 1 DYFDHHEPLSTVPSHR Unmodified 1935.8864 0.88637381 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.299 20.689 3 2.5582E-05 8116 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 85.988 82.02 202770000 15912000 18107000 17697000 0 0 0 18336000 19718000 19756000 0 0 0 11462000 10231000 12639000 0 0 0 17392000 21458000 20061000 0 0 0 4023 1586 3915 75838;75839;75840;75841;75842;75843;75844;75845;75846;75847;75848;75849 46183;46184 46184 2 DYFDLLVISEEVGVAKPNKK Unmodified 2263.21 0.20999936 471 P0A8Y1 yjjG Pyrimidine 5'-nucleotidase YjjG yes yes 0 0 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 50.612 49.342 4 0.15937 24068 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 18.701 18.58 29437000 0 0 0 0 0 0 0 0 0 0 0 0 5845800 5585400 4411700 0 0 0 8015000 5578900 0 0 0 0 4024 471 3916 75850;75851;75852;75853;75854 46185 46185 0 DYFGAHTYK Unmodified 1100.4927 0.49270958 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 17.731 18.383 2;3 0.0010566 6799 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.909 89.085 9856900000 509380000 508410000 481670000 1439300 1368000 1341900 991270000 1022600000 930840000 0 0 875120 797970000 746040000 754840000 0 0 0 1081900000 1053500000 973470000 0 0 0 4025 24 3917 75855;75856;75857;75858;75859;75860;75861;75862;75863;75864;75865;75866;75867;75868;75869;75870;75871;75872;75873;75874;75875;75876;75877;75878;75879;75880;75881;75882 46186;46187;46188;46189;46190;46191;46192;46193;46194;46195;46196;46197;46198;46199;46200;46201;46202;46203;46204;46205;46206 46191 21 DYFGTGLGIAVR Unmodified 1267.6561 0.65608651 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 46.573 45.007 2 0.00010848 22232 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 92.051 84.95 41659000 0 6335100 0 0 0 0 6571600 6944400 5771500 0 0 0 5391800 0 5999900 0 0 0 4644500 0 0 0 0 0 4026 1349 3918 75883;75884;75885;75886;75887;75888;75889 46207;46208 46208 2 DYGIDGFR Unmodified 941.4243 0.42429566 1268 P25718 malS Alpha-amylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 33.616 32.109 2 0.00088413 15301 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.07 119.07 57531000 0 0 0 0 0 0 4673200 3816300 5051800 0 0 0 5217200 5754800 4158100 0 0 0 9721500 9566800 9571100 0 0 0 4027 1268 3919 75890;75891;75892;75893;75894;75895;75896;75897;75898 46209;46210;46211;46212;46213 46209 5 DYGVGSDVYSVTSFTELAR Unmodified 2064.964 0.96401501 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 6 6 5 2 4 3 2 2 3 3 4 3 3 3 3 4 6 4 6 6 6 53.902 52.638 2;3 7.5417E-111 25573 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 379.76 374.04 23108000000 206030000 201690000 206290000 3581200000 3726800000 3419800000 329600000 310390000 293330000 324460000 312310000 288780000 167640000 175350000 183000000 86063000 66277000 56228000 310120000 313110000 278710000 2935100000 2643700000 2691500000 4028 939 3920 75899;75900;75901;75902;75903;75904;75905;75906;75907;75908;75909;75910;75911;75912;75913;75914;75915;75916;75917;75918;75919;75920;75921;75922;75923;75924;75925;75926;75927;75928;75929;75930;75931;75932;75933;75934;75935;75936;75937;75938;75939;75940;75941;75942;75943;75944;75945;75946;75947;75948;75949;75950;75951;75952;75953;75954;75955;75956;75957;75958;75959;75960;75961;75962;75963;75964;75965;75966;75967;75968;75969;75970;75971;75972;75973;75974;75975;75976;75977;75978;75979;75980;75981;75982;75983;75984;75985;75986;75987;75988;75989;75990;75991;75992 46214;46215;46216;46217;46218;46219;46220;46221;46222;46223;46224;46225;46226;46227;46228;46229;46230;46231;46232;46233;46234;46235;46236;46237;46238;46239;46240;46241;46242;46243;46244;46245;46246;46247;46248;46249;46250;46251;46252;46253;46254;46255;46256;46257;46258;46259;46260;46261;46262;46263;46264;46265;46266;46267;46268;46269;46270;46271;46272;46273;46274;46275;46276;46277;46278;46279;46280;46281;46282;46283;46284;46285;46286;46287;46288;46289;46290;46291;46292 46282 75 DYIDESTGELICAANMELSLDLLAK Unmodified 2783.3245 0.32451313 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 2 3 3 2 2 2 1 1 4 3 3 56.341 55.231 2;3 4.3501E-72 22055 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 287.91 280.85 1515700000 0 490260 458600 0 0 0 0 0 0 82075000 94254000 92980000 0 0 0 288500000 278380000 325920000 0 1890500 2882700 95308000 129590000 122930000 4029 463 3921 75993;75994;75995;75996;75997;75998;75999;76000;76001;76002;76003;76004;76005;76006;76007;76008;76009;76010;76011;76012;76013;76014;76015;76016;76017;76018;76019;76020 46293;46294;46295;46296;46297;46298;46299;46300;46301;46302;46303 46294 11 DYIHVMDLADGHVVAMEK Unmodified 2041.9601 0.96013238 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 1 2 2 41.053 39.372 3;4 1.0265E-13 19274 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 135.18 131.64 288520000 74854000 70974000 63873000 0 0 0 17081000 17921000 15346000 0 0 0 5507100 0 5661900 0 0 0 4245600 7656900 5394600 0 0 0 4030 202 3922 76021;76022;76023;76024;76025;76026;76027;76028;76029;76030;76031;76032;76033;76034;76035;76036;76037;76038;76039;76040;76041 46304;46305;46306;46307;46308 46304 5 DYISIDSPMAR Unmodified 1266.5914 0.59143734 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.998 35.487 2 2.1046E-10 14014 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 192.14 180.65 293790000 7837000 5252800 4503800 0 0 0 0 0 3156100 32710000 25993000 26383000 0 3769700 0 68523000 43639000 43882000 2042500 0 0 12159000 13937000 0 4031 1338 3923 76042;76043;76044;76045;76046;76047;76048;76049;76050;76051;76052;76053;76054;76055 46309;46310;46311;46312;46313;46314;46315;46316 46312 8 DYKGDDPTPAVG Unmodified 1233.5513 0.55134667 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 19.007 19.434 2 0.025685 5874 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 65.224 56.361 52684000 2401000 0 0 0 11319000 0 2911400 3581300 3907600 0 0 0 0 2925700 1966900 0 0 0 2727600 2678000 3724200 5245000 4636900 4659500 4032 1899 3924 76056;76057;76058;76059;76060;76061;76062;76063;76064;76065;76066;76067;76068 46317;46318;46319;46320;46321 46319 5 DYLDGVDVAEGELVVLENVR Unmodified 2203.1008 0.10084284 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 3 2 1 3 1 1 2 1 55.596 54.133 2;3 5.5828E-128 25901 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 395.95 383.81 7049700000 809840000 663870000 359180000 2601100 1199000 1718300 939480000 1021800000 826140000 0 0 0 324670000 569290000 209690000 0 0 0 397170000 700040000 222930000 0 0 0 4033 321 3925 76069;76070;76071;76072;76073;76074;76075;76076;76077;76078;76079;76080;76081;76082;76083;76084;76085;76086;76087;76088;76089;76090;76091;76092;76093 46322;46323;46324;46325;46326;46327;46328;46329;46330;46331;46332;46333;46334;46335;46336;46337;46338;46339;46340 46337 19 DYLGGFGFQGDK Unmodified 1302.5881 0.58806652 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.597 40.907 2 0.00067243 20012 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 81.865 76.084 75016000 13341000 9424400 9387000 0 0 0 3648400 5513600 4118100 0 0 0 4335200 3315800 3240200 0 0 0 6275000 6000700 6416700 0 0 0 4034 1664 3926 76094;76095;76096;76097;76098;76099;76100;76101;76102;76103;76104;76105 46341;46342 46341 2 DYLLPENSGVR Unmodified 1261.6303 0.63026569 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.339 31.016 2 5.5425E-05 14618 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128.36 122.88 353890000 23510000 21320000 20177000 0 0 0 0 36952000 35356000 0 0 0 24273000 21145000 26139000 0 0 0 48500000 51525000 42825000 0 0 2165300 4035 1197 3927 76106;76107;76108;76109;76110;76111;76112;76113;76114;76115;76116;76117 46343;46344;46345;46346 46343 4 DYLPDAFGPK Unmodified 1121.5393 0.53932542 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.969 37.114 2 0.00046156 17986 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.54 98.862 5439400000 69799000 71572000 65306000 0 0 0 871200000 871890000 810020000 3152800 2710600 2536400 498050000 423670000 385290000 0 0 0 475940000 454730000 433540000 0 0 0 4036 654 3928 76118;76119;76120;76121;76122;76123;76124;76125;76126;76127;76128;76129;76130;76131;76132 46347;46348;46349;46350;46351;46352;46353;46354;46355;46356;46357;46358 46351 12 DYLQSAK Unmodified 823.40758 0.40758296 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.587 15.126 2 0.0013796 4999 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.04 106.04 3472300000 202340000 223060000 189420000 16537000 16566000 17216000 465270000 471530000 433190000 41394000 30648000 26908000 237230000 200880000 216510000 5690300 4048200 5703800 216440000 224270000 215840000 3766900 3729300 4162900 4037 1045 3929 76133;76134;76135;76136;76137;76138;76139;76140;76141;76142;76143;76144;76145;76146;76147;76148;76149;76150;76151;76152;76153;76154;76155;76156 46359;46360;46361;46362;46363;46364;46365;46366;46367;46368;46369;46370;46371;46372;46373;46374;46375;46376;46377;46378;46379 46365 21 DYLVPSR Unmodified 848.43922 0.43921744 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.255 22.535 2 0.0010277 9360 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 138.48 132.09 2584900000 175050000 155550000 143160000 0 0 1118500 221950000 231600000 221670000 0 0 0 242250000 205160000 204620000 0 0 0 246110000 265090000 271550000 0 0 0 4038 1189 3930 76157;76158;76159;76160;76161;76162;76163;76164;76165;76166;76167;76168;76169 46380;46381;46382;46383;46384;46385;46386;46387;46388;46389;46390;46391 46389 12 DYLVVATTRPETLLGDTGVAVNPEDPR Unmodified 2897.4771 0.4770661 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 49.649 48.259 2;3 4.2661E-41 23795 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 211.3 208.77 1882500000 159210000 129980000 144110000 1621200 0 0 158660000 161470000 150230000 0 0 0 152820000 131400000 134400000 0 0 0 189030000 186340000 183260000 0 0 0 4039 158 3931 76170;76171;76172;76173;76174;76175;76176;76177;76178;76179;76180;76181;76182;76183;76184;76185;76186;76187;76188;76189;76190;76191;76192;76193;76194 46392;46393;46394;46395;46396;46397;46398;46399;46400;46401;46402;46403;46404;46405 46394 14 DYLWILSR Unmodified 1064.5655 0.56548059 476 P0A901 blc Outer membrane lipoprotein Blc yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.424 51.984 2 0.00071397 25890 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.28 120.8 56620000 4505500 4487900 4011000 0 0 0 8256300 9842800 8817900 0 0 0 2745700 1529000 1802900 0 0 0 3982100 3309800 3329300 0 0 0 4040 476 3932 76195;76196;76197;76198;76199;76200;76201;76202;76203;76204;76205;76206 46406;46407;46408;46409;46410 46406 5 DYPATYER Unmodified 1013.4454 0.44542503 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.386 17.143 2 0.0016218 5786 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.32 96.903 297550000 7755000 8335200 8324000 4513200 3283600 4227600 29356000 33135000 33325000 0 0 0 26960000 0 19669000 1171600 0 0 36679000 41021000 39791000 0 0 0 4041 205;1157 3933 76207;76208;76209;76210;76211;76212;76213;76214;76215;76216;76217;76218;76219;76220;76221;76222 46411;46412;46413;46414;46415;46416;46417;46418;46419 46417 9 DYPDTQATR Unmodified 1065.4727 0.47270242 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.862 13.375 2 0.0032424 3200 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 82.279 59.259 77215000 0 0 4370700 0 0 0 0 5515400 0 5528900 5492000 7126600 4813000 0 4542300 0 1644100 2429800 6826600 6355000 9515200 5135900 3321100 4598800 4042 690 3934 76223;76224;76225;76226;76227;76228;76229;76230;76231;76232;76233;76234;76235;76236;76237 46420;46421;46422;46423;46424 46422 5 DYQAELR Unmodified 893.4243 0.42429566 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.859 18.339 2 0.15602 6458 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 55.441 7.2675 323560000 20146000 25366000 19135000 708490 0 0 44733000 39053000 39311000 2234700 1683700 1508300 22865000 18431000 0 0 0 0 30410000 30906000 25450000 1615200 0 0 4043 804 3935 76238;76239;76240;76241;76242;76243;76244;76245;76246;76247;76248;76249;76250;76251;76252;76253 46425 46425 0 DYQEIDDVLFK Unmodified 1383.6558 0.65581174 1773 P75792 ybiV Sugar phosphatase YbiV yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 50.162 48.773 2 6.0474E-05 23037 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 127.4 119.75 196720000 20574000 17559000 22436000 0 0 0 16934000 12881000 0 0 0 0 13646000 15452000 14869000 0 0 0 22072000 21714000 18583000 0 0 0 4044 1773 3936 76254;76255;76256;76257;76258;76259;76260;76261;76262;76263;76264 46426;46427;46428;46429;46430;46431;46432;46433 46431 8 DYQELMNTK Unmodified 1140.5121 0.51212439 11;3 CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 26.234 25.101 2 8.3281E-05 8947 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 157.68 79.755 480660000 0 0 0 4766100 4914800 4329700 0 0 0 103830000 130840000 106840000 0 0 0 8535900 4785800 5809500 0 0 0 37279000 33350000 35373000 + 4045 11;3 3937 76265;76266;76267;76268;76269;76270;76271;76272;76273;76274;76275;76276;76277 46434;46435;46436;46437;46438;46439;46440;46441;46442;46443 46437 10 DYQELMNVK Unmodified 1138.5329 0.53285983 17 CON__P35908 no no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 32.104 30.289 2 0.0008931 10406 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 98.523 96.099 29292000 0 0 0 2385700 2226600 2191700 0 0 0 4249900 0 0 0 0 0 0 0 0 0 0 0 5686000 5669600 6882600 + 4046 17 3938 76278;76279;76280;76281;76282;76283;76284 46444;46445;46446;46447 46446 3 DYSEGASGLLR Unmodified 1166.5568 0.5567664 814 P0ADW3 yhcB Inner membrane protein YhcB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30.399 28.842 2 2.1441E-07 10823 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 164.96 151.24 1298100000 31612000 27662000 28681000 0 0 6312700 134990000 161750000 131500000 32440000 31015000 35588000 103080000 108420000 102600000 0 0 0 111030000 125340000 126120000 0 0 0 4047 814 3939 76285;76286;76287;76288;76289;76290;76291;76292;76293;76294;76295;76296;76297;76298;76299;76300;76301;76302;76303 46448;46449;46450;46451;46452;46453;46454;46455;46456;46457;46458 46451 11 DYSPYFK Unmodified 918.41233 0.41233399 6;12 CON__P02533;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08779 no no 0 0 0 By MS/MS By matching 1 1 28.424 26.324 2 0.10664 10006 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 52.683 49.291 6911200 0 0 0 0 0 0 0 0 0 4048700 0 2862500 0 0 0 0 0 0 0 0 0 0 0 0 + 4048 6;12 3940 76304;76305 46459 46459 1 DYSVNDLVASSFPVSAK Unmodified 1797.8785 0.87849447 941 P0AFH2 oppB Oligopeptide transport system permease protein OppB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 51.29 50.117 2 1.4781E-12 24662 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.5 148.77 51015000 13560000 12599000 12311000 0 0 0 0 0 0 0 0 0 2528200 0 2915700 0 0 0 0 3999500 3101000 0 0 0 4049 941 3941 76306;76307;76308;76309;76310;76311;76312 46460 46460 1 DYTDGMK Unmodified 828.33237 0.33236911 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.343 14.961 2 0.05176 3938 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 62.717 52.411 303360000 4392200 3107400 2807200 700940 560150 498950 34591000 37976000 36981000 13775000 11406000 10773000 33195000 27078000 31262000 0 0 0 16557000 15231000 17041000 1850200 1620100 1958400 4050 700 3942 76313;76314;76315;76316;76317;76318;76319;76320;76321;76322;76323;76324;76325;76326;76327;76328;76329;76330;76331;76332;76333;76334 46461;46462;46463;46464;46465;46466;46467 46463 7 DYTDGMKVEALANFPIER Unmodified 2067.9935 0.993541 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 47.753 46.305 2;3 3.8989E-14 18766 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 149.52 147.9 115440000 0 0 0 0 0 0 0 0 0 31877000 28436000 23860000 0 0 0 6157700 5967200 5029300 0 0 0 5766000 4696600 3648600 4051 700 3943 76335;76336;76337;76338;76339;76340;76341;76342;76343;76344;76345;76346 46468;46469;46470;46471;46472;46473;46474;46475 46470 8 DYTLDIHDENGK Unmodified 1418.6314 0.6313879 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 22.641 21.919 2;3 1.2283E-39 7625 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 282.51 262.75 712810000 0 0 0 0 0 0 102560000 116910000 102710000 44425000 41002000 40640000 42505000 41364000 33944000 0 0 0 43772000 44321000 38849000 7362500 7155700 5290100 4052 1088 3944 76347;76348;76349;76350;76351;76352;76353;76354;76355;76356;76357;76358;76359;76360;76361;76362;76363;76364;76365;76366;76367;76368;76369;76370;76371;76372;76373;76374;76375 46476;46477;46478;46479;46480;46481;46482;46483;46484;46485;46486;46487;46488;46489;46490;46491;46492;46493;46494;46495;46496;46497;46498;46499 46476 24 DYTLDIHDENGKAPLLSVFGGK Unmodified 2388.1961 0.19614021 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 3 3 3 1 2 2 2 1 1 1 1 1 46.444 45.033 2;3;4 7.9641E-28 18361 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 222.45 217.3 881260000 0 0 0 2395800 4047800 3312600 13336000 9852600 10182000 246620000 217400000 225660000 2725100 0 0 24537000 28152000 19663000 5371500 4051100 0 20240000 23281000 20437000 4053 1088 3945 76376;76377;76378;76379;76380;76381;76382;76383;76384;76385;76386;76387;76388;76389;76390;76391;76392;76393;76394;76395;76396;76397;76398;76399;76400;76401;76402;76403 46500;46501;46502;46503;46504;46505;46506;46507;46508;46509;46510;46511;46512 46504 13 DYTPLYDELR Unmodified 1283.6034 0.60338224 1963 Q46871 yqjH NADPH-dependent ferric-chelate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.622 39.923 2 9.7114E-05 19397 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.75 121.53 99808000 12389000 10547000 9190600 0 0 0 5176800 3929600 3863000 0 0 0 7684200 7523000 7562100 0 0 0 8873800 13584000 9485700 0 0 0 4054 1963 3946 76404;76405;76406;76407;76408;76409;76410;76411;76412;76413;76414;76415 46513;46514;46515;46516;46517;46518;46519;46520 46514 8 DYVEGETAAK Unmodified 1081.4928 0.49276916 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.677 14.291 2 0.000466 4470 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.25 101.25 3651400000 297660000 282180000 227690000 50112000 43076000 53480000 458210000 478550000 468890000 42042000 48285000 44782000 196430000 193730000 177570000 3538300 2182900 2617300 170040000 141540000 153540000 42374000 35220000 37673000 4055 548 3947 76416;76417;76418;76419;76420;76421;76422;76423;76424;76425;76426;76427;76428;76429;76430;76431;76432;76433;76434;76435;76436;76437;76438;76439 46521;46522;46523;46524;46525;46526;46527;46528;46529;46530;46531;46532;46533;46534;46535 46530 15 DYVEGETAAKK Unmodified 1209.5877 0.58773217 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 11.554 12.065 2;3 3.5234E-05 2524 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 133.57 133.57 618270000 0 0 0 76937000 86455000 67776000 0 0 0 64065000 60014000 59655000 0 0 0 0 0 0 0 0 0 72088000 63443000 67832000 4056 548 3948 76440;76441;76442;76443;76444;76445;76446;76447;76448;76449;76450;76451;76452;76453;76454;76455;76456;76457 46536;46537;46538;46539;46540;46541;46542;46543;46544;46545;46546 46540 11 DYVTANSAR Unmodified 995.46722 0.46722311 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.516 13.892 2 0.00097193 3366 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 96.492 84.723 67189000 0 0 0 0 0 0 0 4035000 0 2407800 2369800 2221600 0 3491000 2443900 12117000 13171000 12004000 0 0 3754100 3523400 2851300 2799300 4057 1899 3949 76458;76459;76460;76461;76462;76463;76464;76465;76466;76467;76468;76469;76470 46547;46548;46549;46550;46551;46552 46550 6 DYVVSMLDSLGK Unmodified 1325.6537 0.65370325 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.041 51.618 2 2.103E-05 25518 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.83 108.79 4139100000 422020000 391760000 361600000 0 0 0 390080000 352190000 380380000 0 0 0 299680000 286340000 277330000 0 0 0 310160000 344580000 322960000 0 0 0 4058 1109 3950 76471;76472;76473;76474;76475;76476;76477;76478;76479;76480;76481;76482 46553;46554;46555;46556;46557;46558;46559;46560;46561;46562;46563 46558 11 DYYAIMGVKPTDDLK Unmodified 1727.844 0.84402321 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 1 2 2 2 1 1 1 1 1 38.828 36.901 2;3 7.9239E-09 17816 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 184.1 169.86 823230000 118610000 95867000 89019000 2356500 2243900 0 150240000 128560000 125530000 11899000 8066200 10559000 0 24474000 0 0 0 0 22056000 17628000 15630000 0 493260 0 4059 1440 3951 76483;76484;76485;76486;76487;76488;76489;76490;76491;76492;76493;76494;76495;76496;76497;76498;76499;76500;76501;76502;76503;76504 46564;46565;46566;46567;46568;46569;46570;46571;46572;46573;46574;46575;46576;46577;46578;46579 46578 15 DYYSQQIAIVK Unmodified 1326.682 0.68196691 1268 P25718 malS Alpha-amylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 34.732 33.215 2 0.00016399 15775 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.11 80.023 67796000 0 0 0 0 0 0 5916900 5009700 4555600 0 0 0 6374400 4839300 4950700 0 0 0 11788000 13033000 11328000 0 0 0 4060 1268 3952 76505;76506;76507;76508;76509;76510;76511;76512;76513 46580;46581 46581 2 EAAANEVGYR Unmodified 1078.5043 0.5043369 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 13.041 13.813 2 2.8594E-09 4224 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 197.3 176.64 650870000 0 0 0 0 0 0 90819000 85979000 84569000 0 0 2457600 72211000 78718000 66536000 0 0 0 59038000 56694000 52711000 0 0 1137200 4061 1467 3953 76514;76515;76516;76517;76518;76519;76520;76521;76522;76523;76524 46582;46583;46584;46585;46586;46587;46588;46589;46590 46582 9 EAAATAGEKEDAPR Unmodified 1414.6688 0.66883604 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 1 2 2 2 1 1 2 2 2 2 1 10.604 11.214 2;3 4.8719E-14 2514 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 211.64 204 908980000 76192000 105850000 75682000 0 0 0 67209000 60837000 65621000 13770000 14909000 2640000 65765000 60088000 65277000 4622800 13239000 15525000 87185000 54931000 50391000 9240500 0 0 4062 1576 3954 76525;76526;76527;76528;76529;76530;76531;76532;76533;76534;76535;76536;76537;76538;76539;76540;76541;76542;76543;76544;76545;76546;76547;76548;76549;76550;76551;76552;76553;76554;76555;76556;76557 46591;46592;46593;46594;46595;46596;46597;46598;46599;46600;46601;46602;46603;46604;46605;46606 46604 15 EAADIILLEK Unmodified 1113.6281 0.62814043 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.659 36.029 2 0.0003674 17386 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.525 65.192 521170000 0 0 0 0 0 0 9309300 7485100 8681600 2855500 2718400 2932900 119470000 116450000 106860000 23531000 16598000 17298000 31137000 0 33361000 8646200 7307700 6530100 4063 647 3955 76558;76559;76560;76561;76562;76563;76564;76565;76566;76567;76568;76569;76570;76571;76572;76573;76574;76575 46607;46608;46609;46610;46611;46612;46613 46609 6 EAAEAIHHYLEGACSC Unmodified 1816.7509 0.75086789 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 2 2 2 1 1 2 2 2 2 2 2 28.404 27.022 2;3 1.0092E-49 12741 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 286.71 286.71 568160000 1872900 0 0 0 0 0 135330000 132820000 120370000 0 3106100 1603900 39296000 45083000 41207000 0 0 0 16549000 15177000 15743000 0 0 0 4064 1861 3956 76576;76577;76578;76579;76580;76581;76582;76583;76584;76585;76586;76587;76588;76589;76590;76591;76592;76593;76594;76595;76596 46614;46615;46616;46617;46618;46619;46620;46621;46622;46623 46614 10 EAAEILAK Unmodified 843.47018 0.47018322 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 16.885 17.435 2 0.0011803 4698 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 111.01 82.585 30016000000 796470000 738970000 763950000 3818400000 3238400000 3645800000 1170100000 1233200000 1145200000 104590000 107000000 275240000 672900000 566380000 528600000 123820000 108300000 111540000 1056700000 1038400000 909910000 2346600000 2638600000 2877300000 4065 939 3957 76597;76598;76599;76600;76601;76602;76603;76604;76605;76606;76607;76608;76609;76610;76611;76612;76613;76614;76615;76616;76617;76618;76619;76620;76621;76622;76623;76624;76625;76626 46624;46625;46626;46627;46628;46629;46630;46631;46632;46633;46634;46635;46636;46637;46638;46639;46640;46641;46642;46643;46644;46645;46646;46647;46648;46649;46650 46632 27 EAAEILAKDYGVGSDVYSVTSFTELAR Unmodified 2890.4236 0.42363354 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 51.643 50.335 3 6.218E-16 18219 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 144.26 141.39 32277000 0 0 0 10093000 7867000 6877700 0 0 0 0 0 0 0 0 0 0 0 0 3144000 0 0 1398900 1711400 1185200 4066 939 3958 76627;76628;76629;76630;76631;76632;76633 46651;46652;46653 46652 3 EAAEKDKVSNQQDDMTK Unmodified 1935.8844 0.88438448 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 11.047 11.085 3 9.0193E-09 2224 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 118.5 118.44 49342000 0 0 0 0 0 0 0 0 0 5021800 4518800 5236100 0 0 0 11026000 11226000 12313000 0 0 0 0 0 0 4067 297 3959 76634;76635;76636;76637;76638;76639 46654;46655;46656;46657;46658;46659 46656 6 EAAEQAKR Unmodified 901.46174 0.4617438 297 P0A705 infB Translation initiation factor IF-2 yes no 0 0 1 By MS/MS By MS/MS By matching 1 1 1 9.425 9.3802 2 0.00034878 1581 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 148.33 72.292 22667000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16906000 4305500 1455200 0 0 0 0 0 0 4068 297 3960 76640;76641;76642 46660;46661 46660 2 EAAESLFENLFFSEDR Unmodified 1902.8636 0.86357268 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 55.297 54.033 2;3 5.1637E-62 20962 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 387.09 381.37 7887600000 154290000 136180000 135820000 1386300 2321900 2514600 115080000 102020000 90072000 335590000 464310000 392390000 138410000 136310000 117290000 1098500000 1250000000 1449000000 171150000 166530000 154810000 414390000 448150000 411090000 4069 463 3961 76643;76644;76645;76646;76647;76648;76649;76650;76651;76652;76653;76654;76655;76656;76657;76658;76659;76660;76661;76662;76663;76664;76665;76666;76667;76668;76669;76670;76671;76672;76673;76674;76675;76676;76677;76678;76679;76680;76681;76682;76683;76684;76685;76686;76687;76688;76689 46662;46663;46664;46665;46666;46667;46668;46669;46670;46671;46672;46673;46674;46675;46676;46677;46678;46679;46680;46681;46682;46683;46684;46685;46686;46687;46688;46689;46690;46691;46692;46693;46694;46695;46696;46697;46698;46699;46700;46701 46666 40 EAAESLFENLFFSEDRYDLSAVGR Unmodified 2764.298 0.2980391 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 1 3 4 6 6 3 3 2 4 6 4 1 2 3 5 6 5 55.154 53.972 2;3;4 4.0848E-182 21451 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 492.47 473.65 78517000000 196900000 188450000 179220000 41513000 39872000 38351000 122340000 120220000 107720000 5019500000 4519600000 5506200000 181510000 146060000 175150000 12309000000 14631000000 15580000000 245150000 215800000 173840000 6108600000 6180800000 6490500000 4070 463 3962 76690;76691;76692;76693;76694;76695;76696;76697;76698;76699;76700;76701;76702;76703;76704;76705;76706;76707;76708;76709;76710;76711;76712;76713;76714;76715;76716;76717;76718;76719;76720;76721;76722;76723;76724;76725;76726;76727;76728;76729;76730;76731;76732;76733;76734;76735;76736;76737;76738;76739;76740;76741;76742;76743;76744;76745;76746;76747;76748;76749;76750;76751;76752;76753;76754;76755;76756;76757;76758;76759;76760;76761;76762;76763;76764;76765;76766;76767;76768;76769;76770 46702;46703;46704;46705;46706;46707;46708;46709;46710;46711;46712;46713;46714;46715;46716;46717;46718;46719;46720;46721;46722;46723;46724;46725;46726;46727;46728;46729;46730;46731;46732;46733;46734;46735;46736;46737;46738;46739;46740;46741;46742;46743;46744;46745;46746;46747;46748;46749 46705 48 EAAGSALK Unmodified 745.39702 0.39701828 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 1 1 2 2 2 1 1 1 2 1 1 1 1 1 1 10.655 11.306 2 0.01143 2579 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 76.774 16.48 832530000 95213000 74022000 78970000 0 0 0 67319000 72547000 64538000 0 8531200 0 71656000 74461000 84041000 0 2622200 2479000 0 62260000 68306000 0 5561900 0 4071 715 3963 76771;76772;76773;76774;76775;76776;76777;76778;76779;76780;76781;76782;76783;76784;76785;76786;76787;76788;76789;76790;76791 46750;46751;46752;46753;46754 46753 5 EAAIFLPTGTQANLVALLSHCER Unmodified 2510.2951 0.29514275 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 53.485 52.05 3 7.0897E-16 24705 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 154.65 138.76 705070000 53254000 37278000 47975000 0 0 0 97314000 83097000 79173000 0 0 0 41377000 46408000 38867000 0 0 0 67938000 64205000 46618000 0 1567700 0 4072 1778 3964 76792;76793;76794;76795;76796;76797;76798;76799;76800;76801;76802;76803;76804 46755;46756;46757;46758;46759 46758 4 EAAIQVSNVAIFNAATGK Unmodified 1802.9527 0.95266246 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 3 3 3 3 3 3 2 1 2 3 3 3 2 2 3 43.992 42.408 2;3 1.2369E-17 20540 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 233.19 221.66 1235800000 147230000 126750000 108200000 12544000 11943000 10706000 42048000 44684000 39720000 37594000 31122000 28752000 62718000 63158000 47256000 21052000 7273300 10574000 100790000 108890000 95225000 26826000 25501000 25209000 4073 1625 3965 76805;76806;76807;76808;76809;76810;76811;76812;76813;76814;76815;76816;76817;76818;76819;76820;76821;76822;76823;76824;76825;76826;76827;76828;76829;76830;76831;76832;76833;76834;76835;76836;76837;76838;76839;76840;76841;76842;76843;76844;76845;76846;76847;76848;76849;76850;76851;76852;76853;76854;76855;76856;76857;76858;76859;76860;76861;76862;76863;76864;76865;76866;76867 46760;46761;46762;46763;46764;46765;46766;46767;46768;46769;46770;46771;46772;46773;46774;46775;46776;46777;46778;46779;46780;46781;46782;46783;46784;46785;46786;46787;46788;46789;46790;46791;46792;46793;46794;46795;46796;46797;46798;46799;46800;46801;46802;46803;46804;46805;46806;46807;46808;46809;46810 46795 50 EAALTLLGR Unmodified 942.54983 0.54983053 276 P0A6S7 gpsA Glycerol-3-phosphate dehydrogenase [NAD(P)+] yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.817 32.377 2 0.011474 14795 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 72.485 49.056 526270000 52805000 60593000 51155000 0 0 0 32360000 32813000 33081000 0 0 0 37916000 37759000 33851000 0 0 0 48500000 54991000 50451000 0 0 0 4074 276 3966 76868;76869;76870;76871;76872;76873;76874;76875;76876;76877;76878;76879 46811;46812 46812 0 EAALVHEALVAR Unmodified 1277.7092 0.70918471 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 23.26 22.457 2;3 3.7817E-08 8158 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 152.54 134.23 2876900000 337550000 337610000 335910000 15137000 12431000 14666000 166020000 152490000 150200000 21061000 23099000 17005000 181040000 161460000 171400000 0 0 5546600 226330000 243210000 251450000 18937000 19548000 14798000 4075 279 3967 76880;76881;76882;76883;76884;76885;76886;76887;76888;76889;76890;76891;76892;76893;76894;76895;76896;76897;76898;76899;76900;76901;76902;76903;76904;76905;76906;76907;76908;76909;76910;76911;76912;76913;76914;76915;76916;76917;76918;76919;76920;76921;76922;76923 46813;46814;46815;46816;46817;46818;46819;46820;46821;46822;46823;46824;46825;46826;46827;46828;46829;46830;46831;46832;46833;46834;46835;46836;46837;46838;46839;46840 46816 28 EAAPAAAPAAAAAK Unmodified 1179.6248 0.62478638 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 2 2 13.166 13.767 2;3 1.5312E-06 3884 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.35 122.14 12080000000 580400000 536480000 667060000 726020000 713810000 763320000 744110000 773310000 725850000 88877000 75187000 81827000 487610000 519810000 419920000 18394000 14643000 14310000 781830000 687330000 703280000 689780000 628660000 637870000 4076 133 3968 76924;76925;76926;76927;76928;76929;76930;76931;76932;76933;76934;76935;76936;76937;76938;76939;76940;76941;76942;76943;76944;76945;76946;76947;76948;76949;76950;76951;76952;76953;76954;76955;76956;76957;76958 46841;46842;46843;46844;46845;46846;46847;46848;46849;46850;46851;46852;46853;46854;46855;46856;46857;46858;46859;46860;46861;46862;46863;46864;46865;46866;46867;46868;46869;46870 46870 30 EAAPAAAPAAAAAKDVNVPDIGSDEVEVTEILVK Unmodified 3330.7195 0.71948121 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 50.928 49.697 3;4 1.2487E-13 17932 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 118 116.21 530900000 0 0 0 90145000 100000000 88809000 0 0 0 0 4497300 0 0 0 0 0 0 4059100 0 0 0 85382000 86861000 71140000 4077 133 3969 76959;76960;76961;76962;76963;76964;76965;76966;76967;76968;76969;76970;76971;76972 46871;46872;46873;46874;46875;46876;46877;46878;46879;46880 46878 10 EAAPAKAEK Unmodified 913.4869 0.48689592 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 8.7865 9.18 2 0.00010505 832 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 146.23 130.6 177340000 0 0 0 21726000 24847000 25168000 0 0 0 18340000 15199000 14809000 0 0 0 698390 544010 439470 1146200 0 0 22573000 19020000 12835000 4078 548 3970 76973;76974;76975;76976;76977;76978;76979;76980;76981;76982;76983;76984;76985 46881;46882;46883;46884;46885 46885 5 EAAYALGTPK Unmodified 1019.5288 0.52876073 168 P07654 pstA Phosphate transport system permease protein PstA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.034 19.272 2 5.3499E-05 7300 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.77 110.56 640560000 0 0 0 0 0 0 52858000 48401000 48292000 14460000 14949000 14250000 60765000 53477000 52681000 4402300 2978000 3015200 85294000 75434000 77202000 9482200 11828000 10793000 4079 168 3971 76986;76987;76988;76989;76990;76991;76992;76993;76994;76995;76996;76997;76998;76999;77000;77001;77002;77003 46886;46887;46888;46889;46890;46891;46892;46893;46894;46895;46896;46897;46898;46899 46896 14 EACAAANVLLK Unmodified 1158.6067 0.60669348 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 27.107 25.494 2 0.0030913 12232 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 66.546 58.615 1279800000 0 0 0 0 0 0 458520000 423670000 397580000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4080 257 3972 77004;77005;77006 46900;46901 46900 2 EADAALGR Unmodified 801.39808 0.39808091 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 1 1 11.934 12.622 2 0.00075967 3460 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.34 81.624 5641200000 1205600000 1011200000 989240000 0 0 0 451130000 2336100 473460000 0 0 0 399550000 285270000 336330000 0 1180700 926010 0 484990000 0 0 0 0 4081 391 3973 77007;77008;77009;77010;77011;77012;77013;77014;77015;77016;77017;77018;77019 46902;46903;46904;46905;46906;46907 46906 6 EADAYDK Unmodified 810.33956 0.33956298 758 P0ACY9 yebG Uncharacterized protein YebG yes yes 0 0 0 By MS/MS 1 8.7394 9.6545 2 0.15534 1946 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 43.814 43.814 1840800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1840800 0 0 0 0 0 0 0 0 0 4082 758 3974 77020 46908 46908 1 EADFDILEWR Unmodified 1292.6037 0.60371659 109 P05194 aroD 3-dehydroquinate dehydratase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 52.304 51.053 2 2.9285E-12 25197 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 209.58 206.33 235040000 23558000 0 32679000 0 0 0 18473000 16827000 16897000 0 0 0 20749000 22793000 20464000 0 0 0 19592000 23399000 19608000 0 0 0 4083 109 3975 77021;77022;77023;77024;77025;77026;77027;77028;77029;77030;77031 46909;46910;46911;46912 46910 4 EADKLGYNLVVLDSQNNPAK Unmodified 2187.1172 0.11716161 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 3 2 3 2 1 1 3 2 2 1 1 36.397 34.89 2;3 1.875E-95 16828 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 349.47 335.5 2074900000 203400000 172820000 159210000 1397200 1115000 1492400 184630000 191540000 176360000 0 0 0 169850000 158490000 143950000 991420 1367700 0 171000000 161900000 174030000 627280 0 746730 4084 72 3976 77032;77033;77034;77035;77036;77037;77038;77039;77040;77041;77042;77043;77044;77045;77046;77047;77048;77049;77050;77051;77052;77053;77054;77055;77056;77057;77058;77059;77060;77061;77062;77063;77064;77065 46913;46914;46915;46916;46917;46918;46919;46920;46921;46922;46923;46924;46925;46926;46927;46928;46929;46930;46931;46932;46933;46934;46935 46920 23 EADLSLK Unmodified 774.41233 0.41233399 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.059 17.751 2 0.021102 6071 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 76.035 43.921 1216300000 90354000 93140000 89228000 0 0 0 88488000 91439000 96016000 0 0 827060 93868000 103710000 94659000 0 0 0 128120000 121180000 125320000 0 0 0 4085 161 3977 77066;77067;77068;77069;77070;77071;77072;77073;77074;77075;77076;77077;77078 46936;46937;46938;46939 46937 4 EADLSLKR Unmodified 930.51345 0.51344502 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.042 13.736 2 6.8973E-05 3854 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 170.06 129.96 354810000 0 0 45018000 2868600 0 974470 32948000 33631000 36604000 2560700 2076600 2616300 51779000 41566000 45691000 0 0 0 0 0 54265000 2214300 0 0 4086 161 3978 77079;77080;77081;77082;77083;77084;77085;77086;77087;77088;77089;77090;77091;77092 46940;46941;46942;46943;46944;46945;46946 46944 7 EADYYLNEHIPDIAIVDLGLPDEDGLSLIR Unmodified 3367.6824 0.68236743 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.308 53.842 3 1.8113E-08 26510 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 106.81 103.05 322330000 41186000 44201000 43491000 0 0 0 22686000 19485000 16737000 0 0 0 27312000 20424000 28005000 0 0 0 0 26505000 32302000 0 0 0 4087 1214 3979 77093;77094;77095;77096;77097;77098;77099;77100;77101;77102;77103 46947;46948 46947 2 EAEAGNTK Unmodified 818.37701 0.37701112 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 4.9434 5.7717 2 0.00063356 804 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 129.68 85.152 931250000 43170000 52356000 47958000 0 0 0 0 141230 0 0 0 0 110710000 114450000 135600000 0 0 0 142750000 138600000 145510000 0 0 0 4088 1733 3980 77104;77105;77106;77107;77108;77109;77110;77111;77112;77113 46949;46950;46951;46952;46953;46954;46955;46956;46957 46949 9 EAEAYTNEVQPR Unmodified 1405.6474 0.64737232 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.912 17.412 2 1.7123E-39 6327 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 277.96 273.66 633040000 23835000 20721000 20919000 7660000 5461300 3924300 64901000 70551000 65431000 28496000 22190000 8471100 30121000 27659000 26535000 5222600 3880800 3918600 61816000 60825000 57777000 4347800 4778400 3600000 4089 649 3981 77114;77115;77116;77117;77118;77119;77120;77121;77122;77123;77124;77125;77126;77127;77128;77129;77130;77131;77132;77133;77134;77135;77136;77137;77138;77139 46958;46959;46960;46961;46962;46963;46964;46965;46966;46967;46968;46969;46970;46971;46972;46973;46974;46975;46976 46970 19 EAEEAASK Unmodified 833.37668 0.37667677 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 6.5892 7.3217 2 0.0022092 1334 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.41 94.403 866240000 307330000 296770000 262140000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4090 392 3982 77140;77141;77142 46977;46978;46979 46977 3 EAEEELGIAGVPFAEHGQFYFEDK Unmodified 2711.2391 0.23912724 1705 P65556 yfcD Uncharacterized Nudix hydrolase YfcD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.149 48.743 3 1.2725E-30 23594 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 192.63 192.63 390630000 25604000 23741000 19260000 0 0 0 34359000 32601000 31336000 0 0 0 34475000 34702000 34784000 0 0 0 41245000 41712000 36811000 0 0 0 4091 1705 3983 77143;77144;77145;77146;77147;77148;77149;77150;77151;77152;77153;77154 46980;46981;46982;46983;46984;46985;46986;46987;46988;46989;46990;46991 46985 12 EAEEQAR Unmodified 831.37226 0.37226009 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 6.6477 7.4099 2 0.099783 1394 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 62.978 26.422 140340000 51378000 49679000 39133000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 146070 0 0 0 4092 297 3984 77155;77156;77157;77158 46992 46992 0 EAEEQARR Unmodified 987.47337 0.47337112 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 2 1 1 1 9.3083 9.4297 2 0.0020326 1635 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 107.32 80.875 32467000 0 0 0 0 0 0 0 0 0 3385700 2921900 3164900 0 0 0 11019000 4019200 5278100 0 0 0 839790 927940 910730 4093 297 3985 77159;77160;77161;77162;77163;77164;77165;77166;77167;77168 46993;46994 46993 2 EAEESAK Unmodified 762.33956 0.33956298 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 2 2 1 1 1 1 1 4.8387 5.6608 2 0.023142 1115 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.975 56.208 58625000 4799000 7027200 5987400 0 0 0 0 0 0 0 0 0 11110000 5797300 11762000 0 0 0 6337700 5804900 0 0 0 0 4094 297 3986 77169;77170;77171;77172;77173;77174;77175;77176;77177;77178 46995;46996;46997;46998 46998 4 EAEESAKR Unmodified 918.44067 0.44067401 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 9.1751 9.2374 2 0.00078348 1622 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 130.04 43.173 31497000 0 0 0 0 0 0 0 0 0 6614500 6290700 0 0 0 0 5644300 5420200 6535200 0 0 0 0 0 992490 4095 297 3987 77179;77180;77181;77182;77183;77184;77185;77186 46999;47000;47001;47002;47003 47001 5 EAEFPTGIMLEQHAIAIPHCEAIHAK Unmodified 2912.4313 0.43131865 1750 P69828 gatA Galactitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 2 2 2 3 3 3 2 1 3 3 3 1 1 1 3 3 3 1 38.678 37.055 3;4;5 3.4443E-16 18411 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 154.14 152.03 6761000000 640040000 520950000 491850000 13150000 17908000 16784000 667920000 703850000 726460000 0 23722000 15155000 517280000 400600000 523340000 5690400 7278900 5676700 522470000 455990000 477870000 0 6995400 0 4096 1750 3988 77187;77188;77189;77190;77191;77192;77193;77194;77195;77196;77197;77198;77199;77200;77201;77202;77203;77204;77205;77206;77207;77208;77209;77210;77211;77212;77213;77214;77215;77216;77217;77218;77219;77220;77221;77222;77223;77224;77225;77226;77227;77228;77229;77230;77231;77232;77233;77234;77235;77236 47004;47005;47006;47007;47008;47009;47010;47011;47012;47013;47014;47015;47016;47017;47018;47019;47020;47021;47022;47023;47024;47025;47026;47027;47028;47029;47030;47031;47032;47033;47034;47035;47036;47037;47038;47039;47040;47041;47042;47043;47044;47045;47046;47047;47048 47011 45 EAEGQDFQLYPGELGK Unmodified 1779.8315 0.83154427 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.063 38.264 2 1.3413E-18 17822 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 194.24 187.55 2363200000 264700000 281700000 258270000 2378500 2760400 2723300 157400000 166830000 152180000 6879900 5020000 0 148820000 134600000 131600000 0 0 0 220900000 214370000 212030000 0 0 0 4097 451 3989 77237;77238;77239;77240;77241;77242;77243;77244;77245;77246;77247;77248;77249;77250;77251;77252;77253 47049;47050;47051;47052;47053;47054;47055;47056;47057;47058;47059;47060;47061 47061 13 EAEGSHIMLGAQNVDLNLSGAFTGETSAAMLK Unmodified 3261.5646 0.56457725 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.865 49.597 3 4.0864E-55 24529 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 230.85 228.85 1752200000 136390000 111780000 120390000 2547500 2297400 1742500 187350000 215570000 177680000 0 0 0 123590000 116790000 125130000 0 0 0 165670000 127680000 131850000 5778900 0 0 4098 399 3990 77254;77255;77256;77257;77258;77259;77260;77261;77262;77263;77264;77265;77266;77267;77268;77269 47062;47063;47064;47065;47066;47067;47068;47069;47070;47071;47072;47073;47074 47062 13 EAEIHGIDLR Unmodified 1151.5935 0.59348625 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 22.98 22.206 3 0.096199 7992 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 32.329 27.813 43152000 2473400 0 0 4013300 0 0 0 0 0 2958300 2755500 4751200 0 26200000 0 0 0 0 0 0 0 0 0 0 4099 1459 3991 77270;77271;77272;77273;77274;77275 47075;47076 47075 2 EAEIKELLK Unmodified 1071.6176 0.61757574 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 4 3 4 5 5 3 5 4 23.017 22.398 1;2;3 1.8159E-05 6928 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 166.07 101.8 10390000000 0 0 0 2794700 4499800 2474300 0 0 1328000 361950000 372250000 394470000 0 0 0 2516400000 2530900000 2546600000 0 0 0 609270000 512690000 534040000 4100 463 3992 77276;77277;77278;77279;77280;77281;77282;77283;77284;77285;77286;77287;77288;77289;77290;77291;77292;77293;77294;77295;77296;77297;77298;77299;77300;77301;77302;77303;77304;77305;77306;77307;77308;77309;77310;77311;77312;77313;77314;77315 47077;47078;47079;47080;47081;47082;47083;47084;47085;47086;47087;47088;47089;47090;47091;47092;47093;47094;47095;47096;47097;47098;47099;47100;47101;47102 47080 24 EAEIMAVFHYIPLHGCPAGEHFGEFHGEDR Unmodified 3451.5503 0.55026459 1310 P27833 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 44.438 43.106 5 0.0019547 20211 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 46.783 45.254 34147000 0 0 0 0 0 0 0 0 0 0 0 0 12254000 9397100 12496000 0 0 0 0 0 0 0 0 0 4101 1310 3993 77316;77317;77318 47103 47103 1 EAELATLEFLK Unmodified 1262.6758 0.6758189 317 P0A784 orn Oligoribonuclease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 47.283 46.016 2 2.3396E-06 22509 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155.42 142.83 800840000 69368000 68204000 57661000 0 0 0 69269000 69923000 70087000 0 0 0 62108000 56470000 57633000 0 0 1228800 77864000 66927000 74098000 0 0 0 4102 317 3994 77319;77320;77321;77322;77323;77324;77325;77326;77327;77328;77329;77330;77331 47104;47105;47106;47107;47108;47109;47110;47111;47112;47113;47114;47115 47110 12 EAELMQF Unmodified 866.3844 0.38440468 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.949 44.466 1;2 0.013978 21650 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83.229 83.229 1092800000 98387000 109830000 93840000 0 0 0 72121000 70175000 73986000 0 0 0 100790000 94925000 94841000 0 0 0 91879000 95113000 96917000 0 0 0 4103 385 3995 77332;77333;77334;77335;77336;77337;77338;77339;77340;77341;77342;77343;77344;77345;77346;77347;77348;77349;77350;77351;77352;77353;77354;77355 47116;47117;47118;47119;47120;47121;47122;47123;47124;47125;47126;47127;47128 47124 12 EAEPEIYHDVTR Unmodified 1457.6787 0.67867245 795 P0ADP0 yigB Flavin mononucleotide phosphatase YigB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.898 20.424 2 4.7739E-05 7922 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 108.43 97.21 60164000 8056500 8710500 7482400 0 0 0 0 3355800 4078300 0 0 0 4531200 3761200 3525900 0 0 0 5961300 5242200 5458600 0 0 0 4104 795 3996 77356;77357;77358;77359;77360;77361;77362;77363;77364;77365;77366 47129;47130;47131;47132;47133;47134;47135;47136 47132 8 EAEPEIYNAIR Unmodified 1303.6408 0.64083038 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 30.488 29.204 2;3 5.7352E-05 13039 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.456 80.02 2812900000 587480000 651230000 568090000 0 0 0 6563800 9812100 6944300 0 0 0 327400000 342360000 281620000 0 0 0 11715000 11494000 8210400 0 0 0 4105 1195 3997 77367;77368;77369;77370;77371;77372;77373;77374;77375;77376;77377;77378;77379;77380;77381;77382;77383;77384;77385;77386 47137;47138;47139;47140;47141;47142;47143;47144;47145 47145 7 EAEQYIAR Unmodified 978.47706 0.47705951 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 2 1 1 1 1 13.861 14.633 2 0.00065296 4504 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.86 65.555 386750000 30616000 35542000 28189000 0 0 0 54761000 56779000 63951000 1107700 0 0 40202000 42185000 33414000 0 0 0 0 0 0 0 0 0 4106 520 3998 77387;77388;77389;77390;77391;77392;77393;77394;77395;77396;77397 47146;47147;47148;47149;47150 47150 4 EAEYKDWTIEQITR Unmodified 1780.8632 0.86317875 397 P0A853 tnaA Tryptophanase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 34.871 33.419 2;3 8.7336E-45 16342 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 322.77 317.28 10607000000 1835400000 1705000000 1532100000 23939000 22304000 24200000 979770000 871250000 906340000 3300900 0 1938500 429830000 379590000 382190000 5457500 5370400 5343400 489100000 527240000 464310000 0 7066300 5835200 4107 397 3999 77398;77399;77400;77401;77402;77403;77404;77405;77406;77407;77408;77409;77410;77411;77412;77413;77414;77415;77416;77417;77418;77419;77420;77421;77422;77423;77424;77425;77426;77427;77428;77429;77430;77431;77432;77433;77434 47151;47152;47153;47154;47155;47156;47157;47158;47159;47160;47161;47162;47163;47164;47165;47166;47167;47168;47169;47170;47171;47172;47173;47174;47175;47176;47177;47178;47179;47180 47152 30 EAFATIAVAADK Unmodified 1205.6292 0.62920306 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.682 30.325 2 1.1642E-05 14626 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.81 115.77 1439700000 145810000 133740000 133400000 0 0 0 162110000 168750000 165830000 0 0 0 72364000 73267000 72468000 0 0 0 104370000 104990000 102590000 0 0 0 4108 1109 4000 77435;77436;77437;77438;77439;77440;77441;77442;77443;77444;77445;77446 47181;47182;47183;47184;47185;47186;47187;47188;47189;47190;47191;47192 47181 12 EAFATIAVAADKVDVLK Unmodified 1759.972 0.97200092 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 42.701 40.911 2;3 7.0031E-15 20321 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 179.5 160.04 3861500000 344080000 344820000 315470000 2189200 2577800 556190 403620000 411340000 368680000 2733000 3634800 2789300 231240000 224390000 240440000 0 0 0 326620000 321250000 315050000 0 0 0 4109 1109 4001 77447;77448;77449;77450;77451;77452;77453;77454;77455;77456;77457;77458;77459;77460;77461;77462;77463;77464;77465;77466;77467;77468;77469;77470;77471;77472;77473;77474;77475;77476 47193;47194;47195;47196;47197;47198;47199;47200;47201;47202;47203;47204;47205;47206;47207 47198 15 EAFDTGVR Unmodified 893.4243 0.42429566 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.844 17.559 2 0.00033509 6333 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 145.04 128.89 20935000000 3291300000 3122000000 2612900000 10414000 9559000 6903700 2184000000 2097700000 2173200000 487120 0 0 823590000 904340000 729200000 0 0 0 1043500000 1041400000 884090000 0 0 0 4110 397 4002 77477;77478;77479;77480;77481;77482;77483;77484;77485;77486;77487;77488;77489;77490;77491;77492 47208;47209;47210;47211;47212;47213;47214;47215;47216;47217;47218;47219;47220 47211 13 EAFHETELVPGEGSR Unmodified 1656.7744 0.77436375 1681 P64517 yodC Uncharacterized protein YodC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 2 2 2 2 2 2 23.934 22.979 2;3 8.0459E-15 10229 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 221.6 219.66 565990000 12735000 9519400 6687600 0 0 0 124530000 118590000 119570000 3097900 0 0 34349000 31671000 29031000 0 0 0 25135000 27976000 23091000 0 0 0 4111 1681 4003 77493;77494;77495;77496;77497;77498;77499;77500;77501;77502;77503;77504;77505;77506;77507;77508;77509;77510;77511;77512;77513;77514;77515 47221;47222;47223;47224;47225;47226;47227;47228;47229;47230;47231;47232;47233 47226 13 EAFLLSQLDGLTYSEIAHK Unmodified 2134.0946 0.094635252 1207 P23484 fecI Probable RNA polymerase sigma factor FecI yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 50.796 50.489 3 6.8072E-07 18710 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 99.044 94.345 32297000 0 0 0 0 0 0 0 0 0 0 0 3124400 0 0 0 10034000 9689100 9449700 0 0 0 0 0 0 4112 1207 4004 77516;77517;77518;77519 47234 47234 1 EAFNSAWDQYK Unmodified 1357.5939 0.59388018 836 P0AE63 chaB Cation transport regulator ChaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.876 30.519 2 0.00017926 14251 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.15 102.69 232180000 41714000 41279000 38486000 0 0 0 26806000 26586000 26950000 0 0 0 5173300 0 5388500 0 0 0 8406900 6622400 4764000 0 0 0 4113 836 4005 77520;77521;77522;77523;77524;77525;77526;77527;77528;77529;77530 47235;47236;47237;47238 47238 3 EAFPGDVFYLHSR Unmodified 1536.7361 0.73612775 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 3 2 2 2 2 2 3 2 2 2 2 2 2 1 2 2 2 2 2 2 39.287 37.606 2;3 3.595E-09 18381 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 173.24 165.43 1582400000 37507000 36003000 32763000 21878000 25719000 22129000 122860000 93196000 99111000 59345000 61341000 51423000 106840000 85178000 88802000 21039000 13440000 15612000 142820000 137170000 151140000 52173000 56811000 48062000 4114 645 4006 77531;77532;77533;77534;77535;77536;77537;77538;77539;77540;77541;77542;77543;77544;77545;77546;77547;77548;77549;77550;77551;77552;77553;77554;77555;77556;77557;77558;77559;77560;77561;77562;77563;77564;77565;77566;77567;77568;77569;77570;77571;77572;77573;77574;77575;77576;77577 47239;47240;47241;47242;47243;47244;47245;47246;47247;47248;47249;47250;47251;47252;47253;47254;47255;47256;47257;47258;47259;47260;47261;47262;47263;47264;47265;47266;47267;47268;47269;47270;47271;47272;47273;47274;47275;47276;47277;47278;47279;47280;47281;47282;47283;47284;47285;47286;47287;47288;47289;47290;47291;47292;47293;47294;47295;47296;47297;47298;47299;47300;47301;47302;47303;47304;47305;47306;47307;47308;47309;47310;47311;47312;47313 47282 75 EAFSHSLDLAR Unmodified 1244.6149 0.61494998 812 P0ADV5 yhbW Uncharacterized protein YhbW yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 23.596 22.787 2;3 2.9946E-10 10168 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 187.5 179.28 607710000 67612000 75442000 58803000 0 0 0 56046000 61659000 57714000 1217200 643240 0 23751000 24711000 27790000 0 0 0 50418000 58244000 43662000 0 0 0 4115 812 4007 77578;77579;77580;77581;77582;77583;77584;77585;77586;77587;77588;77589;77590;77591;77592;77593;77594;77595;77596;77597;77598;77599;77600;77601;77602 47314;47315;47316;47317;47318;47319;47320;47321;47322;47323 47314 5 EAGAAVTLDGDR Unmodified 1173.5626 0.56258006 1342 P30178 ybiC Uncharacterized oxidoreductase YbiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 18.138 18.737 2 2.9168E-18 7006 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.46 148.66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4116 1342 4008 77603;77604;77605 47324;47325;47326 47324 3 EAGADVMR Unmodified 847.3858 0.38580166 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.593 13.277 2 0.010457 3693 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 76.774 70.544 259490000 25993000 0 21786000 0 0 0 43147000 36270000 48566000 0 2037600 1412200 0 0 0 0 0 0 25066000 25983000 29230000 0 0 0 4117 1778 4009 77606;77607;77608;77609;77610;77611;77612;77613;77614;77615;77616;77617 47327;47328;47329;47330 47329 4 EAGAVDATFVTK Unmodified 1207.6085 0.60846762 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.68 23.672 2 1.8391E-05 10120 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 123.79 111.27 338970000 26820000 25658000 20472000 1250900 1921400 1962100 27319000 21801000 21966000 0 0 0 30442000 29309000 29184000 0 0 0 31370000 37699000 31793000 0 0 0 4118 1748 4010 77618;77619;77620;77621;77622;77623;77624;77625;77626;77627;77628;77629;77630;77631;77632 47331;47332;47333;47334;47335;47336;47337;47338 47336 8 EAGCAQLFNCPVTAIR Unmodified 1805.8553 0.85527338 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.224 37.55 2 9.0676E-40 18230 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 267.43 261.2 307110000 34341000 35995000 28205000 0 0 0 20842000 18215000 18450000 0 0 0 26018000 23198000 24184000 0 0 0 31643000 23349000 22673000 0 0 0 4119 1550 4011 77633;77634;77635;77636;77637;77638;77639;77640;77641;77642;77643;77644 47339;47340;47341;47342;47343;47344;47345;47346;47347;47348;47349 47346 11 EAGDNTIVFTNFVDFDSSWGHR Unmodified 2513.1248 0.12476618 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.883 52.443 2;3 3.9026E-15 26043 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.11 138.03 1095200000 78743000 50452000 57137000 0 0 0 152960000 130930000 120180000 0 0 0 91958000 102210000 70980000 0 0 0 71860000 89683000 78065000 0 0 0 4120 256 4012 77645;77646;77647;77648;77649;77650;77651;77652;77653;77654;77655;77656;77657;77658;77659;77660;77661;77662;77663;77664;77665;77666;77667;77668 47350;47351;47352;47353;47354;47355;47356;47357;47358;47359;47360;47361;47362 47350 13 EAGEGFGDFTVR Unmodified 1283.5782 0.57823012 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.666 33.034 2 3.3904E-23 15701 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 231.23 221.84 1467900000 139600000 136780000 112330000 1840000 1507800 1319000 105820000 106270000 99021000 0 2398100 1830400 100610000 96739000 97516000 0 0 0 148910000 151730000 153830000 3202800 2929600 3692400 4121 1143 4013 77669;77670;77671;77672;77673;77674;77675;77676;77677;77678;77679;77680;77681;77682;77683;77684;77685;77686;77687;77688 47363;47364;47365;47366;47367;47368;47369;47370;47371;47372;47373;47374 47370 12 EAGFDLVELHSAHGYLLHQFLSPSSNHR Unmodified 3160.5479 0.54788005 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 3 3 3 3 3 3 3 41.146 39.475 4;5;6 2.1228E-07 19220 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 90.907 85.187 832970000 17024000 19856000 11521000 0 0 0 113080000 71676000 96173000 0 0 0 69307000 78031000 71171000 0 0 0 99330000 89594000 96200000 0 0 0 4122 1890 4014 77689;77690;77691;77692;77693;77694;77695;77696;77697;77698;77699;77700;77701;77702;77703;77704;77705;77706;77707;77708;77709;77710;77711;77712;77713;77714;77715;77716;77717;77718;77719;77720 47375;47376;47377;47378;47379;47380;47381;47382;47383;47384;47385;47386;47387;47388;47389;47390;47391;47392;47393;47394;47395 47384 21 EAGGIVSDFTGGHNYMLTGNIVAGNPR Unmodified 2746.3133 0.31331201 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.733 44.097 3 0.015659 21508 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 53.589 49.165 695610000 59422000 55929000 52313000 0 0 0 46492000 49828000 52631000 2836800 4150800 4161200 54822000 46633000 48817000 0 0 0 74117000 65878000 74903000 2674600 0 0 4123 787 4015 77721;77722;77723;77724;77725;77726;77727;77728;77729;77730;77731;77732;77733;77734;77735;77736 47396;47397 47396 0 EAGGTPGENMTMDNK Unmodified 1550.6341 0.63410679 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.187 16.759 2 2.1617E-11 5874 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 163.83 159.65 179870000 0 0 0 0 0 0 21885000 23888000 25493000 5093700 5371100 5330000 16351000 16598000 18171000 0 0 0 12323000 12122000 13271000 2002600 0 1965400 4124 1836 4016 77737;77738;77739;77740;77741;77742;77743;77744;77745;77746;77747;77748;77749;77750 47398;47399;47400;47401;47402;47403;47404;47405;47406;47407;47408;47409 47403 12 EAGIDEVIAGVLPDGK Unmodified 1581.825 0.82500233 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 51.133 49.703 2 3.103E-06 20107 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 109 108.43 13146000 0 0 0 902430 0 955660 0 0 0 4391300 3640900 3256100 0 0 0 0 0 0 0 0 0 0 0 0 4125 1980 4017 77751;77752;77753;77754;77755 47410;47411;47412 47410 0 EAGIELSDFVR Unmodified 1234.6194 0.61936665 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.747 42.217 2 1.9782E-15 20837 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 224.86 189.57 1514100000 0 185910000 2107600 0 0 0 244550000 222090000 222530000 0 0 0 95177000 88114000 82338000 0 0 0 125140000 123480000 122660000 0 0 0 4126 1154 4018 77756;77757;77758;77759;77760;77761;77762;77763;77764;77765;77766 47413;47414;47415;47416;47417;47418;47419 47414 7 EAGIIHILALGEDYK Unmodified 1640.8774 0.87737225 1881 P77148 ydhS Uncharacterized protein YdhS yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 45.546 44.057 3 0.0058603 21597 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 43.297 43.054 125590000 34173000 35300000 0 0 0 0 18580000 12310000 12838000 0 0 0 3767200 0 3289300 0 0 0 0 0 5330700 0 0 0 4127 1881 4019 77767;77768;77769;77770;77771;77772;77773;77774 47420;47421;47422;47423 47423 4 EAGINNCYLEGEMVQGK Unmodified 1910.8502 0.85024758 1182 P21507 srmB ATP-dependent RNA helicase SrmB yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 33.669 32.43 2 0.00015971 15282 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 76.728 69.184 11808000 3573600 4325800 3908200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4128 1182 4020 77775;77776;77777 47424 47424 1 EAGINVDYVLEFDVPDELIVDR Unmodified 2519.2431 0.24314998 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 2 2 1 55.541 54.085 2;3 9.5756E-75 26977 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 360.63 356.24 2181000000 249960000 227530000 208080000 0 0 0 106350000 117620000 90496000 0 0 0 224360000 212700000 94496000 0 0 0 277230000 247010000 125110000 0 0 0 4129 1733 4021 77778;77779;77780;77781;77782;77783;77784;77785;77786;77787;77788;77789;77790;77791;77792;77793;77794;77795;77796 47425;47426;47427;47428;47429;47430;47431;47432;47433;47434;47435;47436;47437;47438;47439;47440;47441;47442;47443 47433 19 EAGIQFDESQFVPTVSGYYSDSK Unmodified 2553.1547 0.15472891 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.66 49.304 2;3 1.8368E-63 23112 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 278.08 278.03 6842500000 52443000 44999000 46720000 0 0 0 536240000 531960000 555600000 0 0 0 673720000 686860000 608170000 0 0 0 1094600000 1041800000 969380000 0 0 0 4130 993 4022 77797;77798;77799;77800;77801;77802;77803;77804;77805;77806;77807;77808;77809;77810;77811;77812;77813;77814;77815;77816;77817;77818;77819;77820 47444;47445;47446;47447;47448;47449;47450;47451;47452;47453;47454;47455;47456;47457;47458;47459;47460;47461;47462;47463;47464;47465;47466 47464 23 EAGKTFSNAIAEVR Unmodified 1491.7682 0.76815616 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 23.071 22.373 3 0.10101 7550 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 29.981 22.257 17054000 0 0 0 2160400 2431100 2420000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4636400 2510100 2895900 4131 215 4023 77821;77822;77823;77824;77825;77826 47467;47468 47467 2 EAGLKPGK Unmodified 798.45995 0.45995289 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 8.842 9.6227 2 0.0060434 2137 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 91.626 64.664 80007000 33493000 21213000 23147000 0 0 0 0 0 0 0 0 0 1253200 900800 0 0 0 0 0 0 0 0 0 0 4132 1525 4024 77827;77828;77829;77830;77831 47469;47470;47471 47469 3 EAGLSDLSLK Unmodified 1031.5499 0.5498901 482 P0A915 ompW Outer membrane protein W yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 30.55 29.196 2 0.00058344 10267 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 93.598 71.638 147760000 0 0 0 0 0 0 0 9643400 7538700 29234000 31952000 26884000 11478000 9778900 0 6622400 5825400 6105700 0 0 0 2700600 0 0 4133 482 4025 77832;77833;77834;77835;77836;77837;77838;77839;77840;77841;77842 47472;47473;47474;47475;47476;47477 47472 6 EAGVQEADFLANVDK Unmodified 1604.7682 0.76821574 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 1 2 2 2 1 1 1 38.968 37.18 2;3 8.0236E-27 14658 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 226.04 218.47 5659200000 542570000 564970000 474630000 23488000 23930000 23072000 794730000 711740000 675010000 29719000 29716000 26823000 299650000 253410000 255530000 0 572900 0 289550000 284480000 267410000 27098000 30653000 30479000 4134 548 4026 77843;77844;77845;77846;77847;77848;77849;77850;77851;77852;77853;77854;77855;77856;77857;77858;77859;77860;77861;77862;77863;77864;77865;77866;77867;77868;77869;77870;77871;77872;77873;77874;77875;77876;77877;77878;77879 47478;47479;47480;47481;47482;47483;47484;47485;47486;47487;47488;47489;47490;47491;47492;47493;47494;47495;47496 47480 17 EAGVQEADFLANVDKLSEDAFDDQCTGANPR Unmodified 3381.5055 0.50554205 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 52.458 51.19 3;4 7.707E-83 20751 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 291.65 291.65 1776300000 63812000 63779000 53211000 126630000 173590000 176280000 52917000 42721000 45986000 114000000 117390000 111270000 33504000 29088000 30056000 0 0 8035100 38464000 36713000 39107000 156000000 148250000 115470000 4135 548 4027 77880;77881;77882;77883;77884;77885;77886;77887;77888;77889;77890;77891;77892;77893;77894;77895;77896;77897;77898;77899;77900;77901;77902;77903;77904;77905;77906;77907;77908;77909;77910;77911;77912;77913;77914;77915;77916;77917;77918;77919;77920;77921;77922 47497;47498;47499;47500;47501;47502;47503;47504;47505;47506;47507;47508;47509;47510;47511;47512;47513;47514;47515;47516;47517;47518;47519;47520;47521;47522;47523;47524;47525 47497 29 EAGVYMR Unmodified 824.38507 0.38507338 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.335 14.937 2 0.00096996 4772 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 140.01 129.83 3582300000 398030000 308770000 326200000 17007000 13712000 19432000 144040000 137370000 134360000 68147000 63671000 65887000 236240000 230840000 201840000 73377000 59159000 59768000 305980000 291770000 285750000 51437000 48432000 41069000 4136 349 4028 77923;77924;77925;77926;77927;77928;77929;77930;77931;77932;77933;77934;77935;77936;77937;77938;77939;77940;77941;77942;77943;77944;77945;77946 47526;47527;47528;47529;47530;47531;47532;47533;47534;47535;47536;47537;47538;47539;47540;47541;47542;47543 47535 18 EAGVYMR Oxidation (M) 840.37999 0.379988 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.395 12.279 2 0.082371 3276 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.358 35.727 260150000 21291000 22292000 21189000 2937500 3193100 2934200 25677000 18325000 21097000 0 0 0 18015000 14956000 11583000 0 0 0 25254000 28186000 23222000 0 0 0 4137 349 4028 77947;77948;77949;77950;77951;77952;77953;77954;77955;77956;77957;77958;77959;77960;77961 47544 47544 1 EAGYNIEPDQVR Unmodified 1389.6525 0.6524577 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.8 22.938 2 3.359E-06 10261 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 135.87 128.75 194060000 14661000 16758000 15147000 0 0 0 20773000 14502000 17175000 0 0 0 12618000 10537000 13318000 0 0 0 19528000 19024000 20018000 0 0 0 4138 35 4029 77962;77963;77964;77965;77966;77967;77968;77969;77970;77971;77972;77973 47545 47545 1 EAGYQLIIVTGR Unmodified 1318.7245 0.72450043 1186 P21829 ybhA Pyridoxal phosphate phosphatase YbhA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 39.513 37.934 2 0.0015074 18410 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.056 77.825 20717000 6688700 6399400 5795500 519260 599230 714930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4139 1186 4030 77974;77975;77976;77977;77978;77979 47546;47547;47548 47547 3 EAHCLGDLLMK Unmodified 1285.6159 0.61587795 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 30.384 29.028 2;3 3.9277E-10 13395 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.65 160.41 1295400000 302050000 252990000 225090000 0 0 0 44348000 46229000 49237000 0 0 0 54025000 57899000 56227000 0 0 0 65042000 72550000 69730000 0 0 0 4140 1455 4031 77980;77981;77982;77983;77984;77985;77986;77987;77988;77989;77990;77991;77992;77993;77994;77995;77996;77997;77998;77999;78000;78001;78002;78003 47549;47550;47551;47552;47553;47554;47555;47556;47557;47558;47559;47560;47561;47562;47563;47564;47565;47566;47567 47561 18 EAHHIVGEAVVEAIR Unmodified 1628.8635 0.86345352 1069 P11447 argH Argininosuccinate lyase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 1 2 2 24.846 23.84 2;3 4.6686E-06 10863 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.812 85.69 153230000 26881000 3187600 0 0 0 0 3410800 18462000 17429000 0 0 0 12638000 11592000 9849100 0 0 0 15255000 18761000 15760000 0 0 0 4141 1069 4032 78004;78005;78006;78007;78008;78009;78010;78011;78012;78013;78014;78015;78016;78017;78018;78019;78020;78021 47568;47569;47570;47571;47572;47573;47574;47575;47576;47577;47578 47570 1 EAHNELLDAMMQSYR Unmodified 1806.8029 0.80290346 54 P00936 cyaA Adenylate cyclase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.267 40.344 3 1.4874E-05 19571 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.311 87.125 39748000 5318200 4514000 4697000 2202500 0 1473400 0 0 0 1403800 1898100 1614700 0 0 0 0 0 0 4036500 2827700 4160700 2195700 1507800 1897600 4142 54 4033 78022;78023;78024;78025;78026;78027;78028;78029;78030;78031;78032;78033;78034;78035 47579 47579 1 EAHPEIPTK Unmodified 1020.524 0.52400971 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.139 12.804 2 0.0005676 3442 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 106.91 92.754 531450000 50185000 41429000 10942000 0 3565800 3804900 39373000 38823000 36243000 6564300 0 0 57967000 50492000 0 7862200 0 4043100 55350000 55035000 57250000 0 6041100 6481300 4143 1628 4034 78036;78037;78038;78039;78040;78041;78042;78043;78044;78045;78046;78047;78048;78049;78050;78051;78052;78053;78054 47580;47581;47582;47583 47583 4 EAHPGGWLR Unmodified 1021.5094 0.50936269 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 15.815 16.67 2 0.0043965 5827 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 78.178 64.403 153720000 0 0 0 0 0 0 35850000 39389000 31555000 0 0 0 13392000 13033000 12475000 0 0 0 4119500 3909500 0 0 0 0 4144 1861 4035 78055;78056;78057;78058;78059;78060;78061;78062 47584;47585;47586 47586 3 EAHVMSLATSIGR Unmodified 1370.6976 0.69763375 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 26.289 25.268 2;3 8.2259E-07 11618 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 175.33 170.87 605540000 118320000 113100000 108680000 0 0 0 18299000 16054000 53551000 0 0 0 27003000 28048000 27653000 0 0 0 30005000 30659000 34170000 0 0 0 4145 218 4036 78063;78064;78065;78066;78067;78068;78069;78070;78071;78072;78073;78074;78075;78076;78077;78078;78079;78080;78081;78082;78083;78084 47587;47588;47589;47590;47591;47592;47593;47594;47595;47596;47597;47598;47599;47600 47587 6 EAIDNKVQPLIR Unmodified 1394.7882 0.78816332 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 1 By MS/MS 1 22.13 22.084 3 0.056958 6599 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 46.796 40.215 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4146 1005 4037 78085 47601 47601 1 EAIEEAGLIVK Unmodified 1170.6496 0.64960415 1981 Q93K97 nudF ADP-ribose pyrophosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.857 30.518 2 0.00023665 13843 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 99.802 79.664 212520000 17978000 15488000 15487000 0 0 0 19304000 23465000 21100000 0 0 0 12604000 14970000 15613000 0 0 0 17424000 19730000 19357000 0 0 0 4147 1981 4038 78086;78087;78088;78089;78090;78091;78092;78093;78094;78095;78096;78097 47602;47603;47604 47602 3 EAIEETGYEVGEVR Unmodified 1579.7366 0.73658126 1457 P37128 nudK GDP-mannose pyrophosphatase NudK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.945 26.797 2 1.4393E-19 12315 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 210.87 208.13 160860000 13696000 13912000 14055000 0 0 0 13495000 14093000 13610000 0 0 0 13206000 10309000 11971000 0 0 0 16655000 15157000 10700000 0 0 0 4148 1457 4039 78098;78099;78100;78101;78102;78103;78104;78105;78106;78107;78108;78109 47605;47606;47607;47608;47609;47610;47611;47612 47607 8 EAIEHEMHHYEDPR Unmodified 1791.7635 0.76348148 928 P0AFD1 nuoE NADH-quinone oxidoreductase subunit E yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 2 3 3 3 2 2 2 2 2 2 1 3 3 3 1 1 1 12.899 13.629 2;3;4 2.3289E-14 4115 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 224.42 224.42 1652000000 38200000 71225000 45020000 17909000 30078000 14825000 130460000 160080000 150950000 22720000 17657000 15124000 89369000 79971000 82352000 4476400 0 0 237720000 209470000 195810000 11273000 14606000 12692000 4149 928 4040 78110;78111;78112;78113;78114;78115;78116;78117;78118;78119;78120;78121;78122;78123;78124;78125;78126;78127;78128;78129;78130;78131;78132;78133;78134;78135;78136;78137;78138;78139;78140;78141;78142;78143;78144;78145;78146;78147;78148;78149;78150;78151;78152;78153;78154;78155;78156;78157 47613;47614;47615;47616;47617;47618;47619;47620;47621;47622;47623;47624;47625;47626;47627;47628;47629;47630;47631;47632;47633;47634;47635;47636;47637;47638;47639 47625 27 EAIFALAQIEQELIAPENR Unmodified 2154.1321 0.13208339 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 1 3 3 3 2 2 2 3 2 3 1 1 1 3 3 2 1 1 1 55.575 54.194 2;3 2.0467E-110 26772 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 370.69 337.15 8051400000 662480000 516590000 620860000 8924700 9984300 0 878510000 874170000 834400000 82154000 80142000 79821000 615460000 492890000 544480000 17137000 27710000 28413000 558250000 501660000 585490000 11312000 11561000 9016900 4150 1046 4041 78158;78159;78160;78161;78162;78163;78164;78165;78166;78167;78168;78169;78170;78171;78172;78173;78174;78175;78176;78177;78178;78179;78180;78181;78182;78183;78184;78185;78186;78187;78188;78189;78190;78191;78192;78193;78194;78195;78196;78197;78198;78199;78200;78201;78202;78203;78204 47640;47641;47642;47643;47644;47645;47646;47647;47648;47649;47650;47651;47652;47653;47654;47655;47656;47657;47658;47659;47660;47661;47662;47663;47664;47665;47666;47667;47668;47669;47670;47671;47672;47673;47674;47675;47676;47677 47668 37 EAIFEGHIMLLEDEELEQEIIALIK Unmodified 2924.5093 0.50927743 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.848 54.391 3 0.00015186 26755 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 67.413 62.359 162480000 6760900 5539500 5668700 0 0 0 11765000 0 13952000 0 0 0 15231000 31427000 11818000 0 0 0 21512000 21687000 17118000 0 0 0 4151 192 4042 78205;78206;78207;78208;78209;78210;78211;78212;78213;78214;78215 47678 47678 1 EAIGYADSVHDYVSR Unmodified 1680.7744 0.77436375 650 P0ABD3 bfr Bacterioferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 27.016 25.702 2;3 4.6804E-36 11697 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 266.93 266.02 1653500000 219450000 206170000 220740000 0 0 0 177040000 163230000 165410000 18109000 15945000 12286000 62734000 60069000 63561000 0 0 0 87892000 89811000 91015000 0 0 0 4152 650 4043 78216;78217;78218;78219;78220;78221;78222;78223;78224;78225;78226;78227;78228;78229;78230;78231;78232;78233;78234;78235;78236;78237;78238;78239;78240;78241;78242;78243;78244;78245 47679;47680;47681;47682;47683;47684;47685;47686;47687;47688;47689;47690;47691;47692;47693;47694;47695;47696;47697;47698;47699;47700;47701;47702;47703;47704 47694 25 EAIHMYGPDYGFDTTINK Unmodified 2070.9357 0.93569177 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 36.85 35.193 2;3 1.1935E-67 17291 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 312.05 310.21 1677000000 148720000 135810000 134910000 0 0 0 137390000 147820000 150500000 0 0 0 123080000 127190000 146040000 0 0 0 145510000 146510000 133560000 0 0 0 4153 128 4044 78246;78247;78248;78249;78250;78251;78252;78253;78254;78255;78256;78257;78258;78259;78260;78261;78262;78263;78264;78265;78266;78267;78268;78269 47705;47706;47707;47708;47709;47710;47711;47712;47713;47714;47715;47716;47717;47718;47719;47720;47721;47722;47723;47724;47725;47726;47727 47708 23 EAILEAQSVK Unmodified 1086.5921 0.59208927 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.448 20.751 2 1.9527E-06 8034 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 159.37 95.889 1860000000 336450000 327980000 321940000 861750 772830 655250 185080000 192760000 194570000 2229900 0 2408000 42677000 43287000 41048000 0 0 0 52947000 57881000 56411000 0 0 0 4154 1423 4045 78270;78271;78272;78273;78274;78275;78276;78277;78278;78279;78280;78281;78282;78283;78284;78285;78286 47728;47729;47730;47731 47730 4 EAILYDALR Unmodified 1062.571 0.5709599 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.897 35.24 2 0.00019484 16948 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.02 116.55 180780000 25236000 23820000 24295000 0 0 0 13261000 15986000 14763000 0 0 0 9171200 9427000 10894000 0 0 0 12462000 12647000 8812400 0 0 0 4155 748 4046 78287;78288;78289;78290;78291;78292;78293;78294;78295;78296;78297;78298 47732;47733;47734;47735;47736;47737;47738;47739;47740 47736 9 EAIMLLR Unmodified 844.48406 0.48405915 1857 P76407 yegS Lipid kinase YegS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.222 31.567 2 0.0016551 14781 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.16 112.6 99501000 13991000 13706000 12789000 0 0 0 11483000 11189000 11642000 1461900 1482900 1444500 3481000 4376500 3665900 0 0 0 4664000 4124300 0 0 0 0 4156 1857 4047 78299;78300;78301;78302;78303;78304;78305;78306;78307;78308;78309;78310;78311;78312 47741;47742;47743;47744;47745;47746 47745 3 EAIREMIK Unmodified 988.53755 0.53755128 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 28.786 28.538 2 0.014989 9309 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 81.297 33.448 128410000 0 0 3627500 0 0 0 0 0 0 0 0 0 0 0 0 28458000 46964000 49361000 0 0 0 0 0 0 4157 1421 4048 78313;78314;78315;78316 47747;47748;47749 47749 3 EAISQLQASESPR Unmodified 1414.7052 0.70522155 718 P0ACC1 prmC Release factor glutamine methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 20.198 20.566 2 0.047821 8114 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 61.344 58.205 39064000 0 3878700 0 0 0 0 3280300 3408200 4700700 0 0 0 3463000 3336400 2496200 0 0 0 4984700 4898900 4617100 0 0 0 4158 718 4049 78317;78318;78319;78320;78321;78322;78323;78324;78325;78326 47750 47750 0 EAITAIR Unmodified 772.4443 0.44430282 302 P0A722 lpxA Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.508 17.166 2 8.2743E-05 6133 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.75 80.654 663330000 84820000 75866000 71049000 0 0 0 74742000 0 70030000 0 0 0 45234000 39064000 35586000 1276200 986830 1061700 54211000 51316000 58082000 0 0 0 4159 302 4050 78327;78328;78329;78330;78331;78332;78333;78334;78335;78336;78337;78338;78339;78340;78341 47751;47752;47753;47754;47755;47756;47757;47758;47759;47760 47752 10 EAIVERDEVGAR Unmodified 1342.6841 0.68409218 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.701 14.29 3 0.092362 4439 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 27.34 23.37 81779000 7992600 5354300 5545500 1451100 790250 1330600 0 7238100 0 9305300 4723300 6116100 8800700 0 0 0 0 2427000 0 11824000 0 4151400 4728800 0 4160 1197 4051 78342;78343;78344;78345;78346;78347;78348;78349;78350;78351;78352;78353;78354;78355;78356 47761;47762;47763 47763 0 EAIVLCGR Unmodified 916.48004 0.4800364 1761 P75682 yagE Probable 2-keto-3-deoxy-galactonate aldolase YagE yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 20.803 21.073 2 0.00079634 8263 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.79 88.688 56617000 19800000 15501000 14499000 0 0 0 3421500 3395000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4161 1761 4052 78357;78358;78359;78360;78361 47764;47765 47764 2 EAKDLVESAPAALK Unmodified 1440.7824 0.78240924 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 2 2 23.986 23.058 2;3 8.8625E-06 7395 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 122.51 111.75 68458000 0 0 0 14212000 14990000 14607000 0 0 0 1408800 3278500 0 0 0 0 0 4388600 3273400 0 0 0 3491100 3858000 4950500 4162 351 4053 78362;78363;78364;78365;78366;78367;78368;78369;78370;78371;78372;78373;78374;78375;78376 47766;47767;47768;47769;47770;47771;47772 47768 6 EALAEVGITGMTVTEVK Unmodified 1746.9074 0.90735175 567 P0A9Z1 glnB Nitrogen regulatory protein P-II 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.374 41.859 2 2.4894E-10 19686 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 162.22 159.88 93770000 4927600 6683100 6631700 0 0 0 8582200 9583500 10840000 0 0 0 7536600 7429200 6093000 0 0 0 10151000 7456400 7855500 0 0 0 4163 567 4054 78377;78378;78379;78380;78381;78382;78383;78384;78385;78386;78387;78388 47773;47774;47775;47776;47777;47778 47776 6 EALAGLPGR Unmodified 882.49232 0.49231565 1002 P0AGA6 uhpA Transcriptional regulatory protein UhpA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.728 22.199 2 0.0087734 9459 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.058 54.927 89259000 14416000 19202000 12238000 0 0 0 6564100 4776200 4503100 0 0 0 2458900 2441000 1905000 0 0 0 7257500 5277500 8219500 0 0 0 4164 1002 4055 78389;78390;78391;78392;78393;78394;78395;78396;78397;78398;78399;78400 47779 47779 0 EALALGVNHIDTSDFYGPHVTNQIIR Unmodified 2879.4566 0.45660543 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1 1 1 1 1 1 1 43.085 41.582 3;4 1.9275E-15 20365 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.89 137.89 443070000 114450000 75533000 74134000 0 0 0 23370000 27381000 31065000 0 0 0 11131000 14882000 15257000 0 0 0 22008000 18539000 15314000 0 0 0 4165 1278 4056 78401;78402;78403;78404;78405;78406;78407;78408;78409;78410;78411;78412;78413 47780;47781;47782;47783 47780 4 EALDSFR Unmodified 836.40283 0.40283194 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 20.891 21.192 2 0.0010277 8443 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.48 95.761 1226300000 124750000 105520000 105140000 0 0 0 140940000 127110000 124520000 0 0 0 109580000 94013000 0 0 0 0 141960000 152780000 0 0 0 0 4166 158 4057 78414;78415;78416;78417;78418;78419;78420;78421;78422;78423 47784;47785 47784 2 EALEACSVDLVALR Unmodified 1544.7868 0.78684269 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 43.413 41.301 2 8.5974E-11 16554 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 162.36 135.69 21302000 0 0 0 1223600 1564000 1303200 0 0 0 5514200 4615500 7081900 0 0 0 0 0 0 0 0 0 0 0 0 4167 658 4058 78424;78425;78426;78427;78428;78429 47786;47787 47787 2 EALEKAEEAGVDLVEISPNAEPPVCR Unmodified 2821.3804 0.38038852 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 43.749 41.71 3 1.0087E-30 16935 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 188.07 183.99 85665000 0 0 0 5063300 4473500 5169300 0 0 0 14534000 18442000 17199000 0 0 0 0 0 0 0 0 0 6311700 7490200 6981800 4168 298 4059 78430;78431;78432;78433;78434;78435;78436;78437;78438 47788;47789;47790;47791;47792;47793;47794;47795 47788 8 EALETFMK Unmodified 967.46847 0.46846866 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.387 28.131 2 0.0052359 13058 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.953 86.953 1168700000 98730000 83959000 72345000 0 0 0 109910000 128570000 109770000 0 0 0 85176000 84485000 73003000 0 0 0 112910000 115320000 94512000 0 0 0 4169 702 4060 78439;78440;78441;78442;78443;78444;78445;78446;78447;78448;78449;78450 47796;47797;47798 47796 3 EALEVQR Unmodified 843.44503 0.4450311 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 2 1 1 1 1 13.258 14.048 2 0.00037797 4417 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 155.73 86.303 2879900000 203970000 203370000 185450000 0 0 0 295400000 278590000 273160000 0 0 0 225060000 240270000 210850000 0 0 0 271310000 235520000 249190000 0 4297800 3447300 4170 1294 4061 78451;78452;78453;78454;78455;78456;78457;78458;78459;78460;78461;78462;78463;78464;78465 47799;47800;47801;47802;47803;47804;47805;47806;47807;47808;47809;47810 47799 12 EALEWGTTGAGLR Unmodified 1359.6783 0.67827852 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.571 33.113 2 9.8175E-19 16067 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 222 189.68 1583700000 58166000 59550000 49309000 13729000 15560000 17781000 119420000 0 101170000 54290000 54524000 44051000 117680000 99868000 105740000 14359000 9328300 11305000 173710000 187440000 181000000 32793000 30697000 32190000 4171 1426 4062 78466;78467;78468;78469;78470;78471;78472;78473;78474;78475;78476;78477;78478;78479;78480;78481;78482;78483;78484;78485;78486;78487;78488;78489 47811;47812;47813;47814;47815;47816;47817;47818;47819;47820;47821;47822;47823;47824;47825;47826;47827;47828;47829;47830 47818 20 EALFWHVQQALSASNSK Unmodified 1914.9588 0.95881047 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.3 38.634 3 1.3681E-06 19143 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 94.882 91.102 125760000 9478600 8566400 9971800 0 0 0 14780000 16271000 15619000 0 0 0 7272100 6643700 5686100 0 0 0 12436000 11869000 7171500 0 0 0 4172 1482 4063 78490;78491;78492;78493;78494;78495;78496;78497;78498;78499;78500;78501 47831;47832 47832 2 EALGDQIPLAVISGPTFAK Unmodified 1926.0462 0.046228496 276 P0A6S7 gpsA Glycerol-3-phosphate dehydrogenase [NAD(P)+] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 53.247 51.807 2;3 2.8928E-10 25455 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 169.4 168.78 650530000 65800000 60275000 64951000 0 0 0 38183000 42985000 41239000 0 0 0 51143000 57164000 46072000 0 0 0 55962000 62726000 64033000 0 0 0 4173 276 4064 78502;78503;78504;78505;78506;78507;78508;78509;78510;78511;78512;78513;78514;78515;78516;78517;78518;78519;78520;78521;78522;78523;78524;78525 47833;47834;47835;47836;47837;47838;47839;47840;47841;47842;47843;47844;47845;47846;47847 47838 15 EALGELLAR Unmodified 970.54475 0.54474515 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.458 33.01 2 0.0018627 16019 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 87.181 59.347 159630000 19699000 19769000 18610000 0 0 0 12436000 10361000 13514000 0 0 0 10899000 10294000 8805800 0 0 0 13366000 10589000 11285000 0 0 0 4174 1355 4065 78526;78527;78528;78529;78530;78531;78532;78533;78534;78535;78536;78537 47848;47849;47850;47851 47849 4 EALGFPMCNK Unmodified 1165.526 0.52600031 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.46 30.07 2 0.0001695 13425 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 124.08 124.08 1884700000 153370000 155750000 125470000 9451200 10592000 10002000 145220000 143480000 151360000 53703000 48008000 38596000 98643000 94677000 87445000 18995000 11562000 12770000 150570000 154280000 144260000 23745000 19993000 22778000 4175 61 4066 78538;78539;78540;78541;78542;78543;78544;78545;78546;78547;78548;78549;78550;78551;78552;78553;78554;78555;78556;78557;78558;78559;78560;78561 47852;47853;47854;47855;47856;47857;47858;47859;47860;47861;47862;47863;47864;47865;47866;47867;47868;47869;47870;47871;47872;47873;47874 47874 23 EALGFPMCNK Oxidation (M) 1181.5209 0.52091494 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 25.14 23.779 2 0.056781 8915 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 42.869 42.869 25138000 0 0 0 0 0 0 6795100 5586300 4777500 1486100 1220700 1332100 0 0 1550600 0 0 0 0 2390000 0 0 0 0 4176 61 4066 78562;78563;78564;78565;78566;78567;78568;78569 47875 47875 0 EALGFPMCNKDK Unmodified 1408.6479 0.64790636 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 2 2 2 2 2 2 1 1 2 2 2 23.645 22.736 2;3 0.0007944 8103 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 68.548 68.492 111200000 0 0 0 1885800 8116800 8409500 0 0 0 15822000 16080000 17439000 0 0 0 6355600 5031800 5107100 0 0 0 11540000 8236400 7173300 4177 61 4067 78570;78571;78572;78573;78574;78575;78576;78577;78578;78579;78580;78581;78582;78583;78584;78585;78586;78587;78588;78589;78590 47876;47877;47878;47879;47880;47881 47878 6 EALGLPHSDVFR Unmodified 1339.6884 0.68844927 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 1 2 2 2 1 1 1 31.235 29.819 2;3 5.973E-07 14164 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.97 149.81 7378700000 1194800000 945250000 857720000 7757300 7707800 5945700 343930000 365160000 364060000 5369200 0 0 374190000 372540000 321760000 0 2528000 0 730070000 725060000 739130000 4613800 5881900 5147900 4178 1444 4068 78591;78592;78593;78594;78595;78596;78597;78598;78599;78600;78601;78602;78603;78604;78605;78606;78607;78608;78609;78610;78611;78612;78613;78614;78615;78616;78617;78618;78619;78620;78621;78622 47882;47883;47884;47885;47886;47887;47888;47889;47890;47891;47892;47893;47894;47895;47896;47897;47898;47899;47900;47901;47902;47903;47904;47905;47906 47887 25 EALHDSLKR Unmodified 1067.5724 0.57235688 556 P0A9T4 tas Protein tas yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 1 1 1 2 10.839 11.647 2;3 1.1338E-05 2927 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 168.08 152.58 649340000 24833000 52403000 14544000 0 0 0 88079000 83466000 101660000 0 0 0 47615000 49203000 11612000 0 0 0 61474000 45674000 68777000 0 0 0 4179 556 4069 78623;78624;78625;78626;78627;78628;78629;78630;78631;78632;78633;78634;78635;78636;78637;78638;78639;78640;78641;78642 47907;47908;47909;47910;47911;47912;47913;47914;47915;47916;47917;47918;47919;47920 47913 13 EALHPEIDGCEGILNAMAR Unmodified 2094.9827 0.98265874 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 40.444 38.823 3 5.2398E-18 18717 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 173.03 168.92 495020000 84321000 73672000 70163000 0 0 0 25550000 0 23367000 0 0 0 33227000 42456000 37288000 0 0 0 36164000 35768000 33042000 0 0 0 4180 1508 4070 78643;78644;78645;78646;78647;78648;78649;78650;78651;78652;78653 47921;47922;47923 47923 3 EALIGLAHIAVQR Unmodified 1389.8092 0.80923311 769 P0AD57 ispB Octaprenyl-diphosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 35.266 33.653 2;3 0.00013519 15329 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 84.053 77.634 440660000 37752000 32390000 28996000 1013800 630940 0 44000000 34559000 34327000 1347300 1210900 1619900 25107000 27985000 26501000 0 0 0 48911000 43186000 49041000 954570 0 1123100 4181 769 4071 78654;78655;78656;78657;78658;78659;78660;78661;78662;78663;78664;78665;78666;78667;78668;78669;78670;78671;78672;78673;78674;78675;78676;78677;78678;78679;78680;78681;78682;78683;78684 47924;47925;47926;47927;47928;47929;47930;47931;47932;47933;47934;47935;47936 47936 12 EALLDSLK Unmodified 887.4964 0.49639797 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.41 30.023 2 0.0081036 14035 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.241 52.434 493760000 86254000 80138000 72743000 0 0 0 72906000 63816000 66968000 0 0 0 9960300 0 11631000 0 0 0 15296000 14049000 0 0 0 0 4182 1960 4072 78685;78686;78687;78688;78689;78690;78691;78692;78693;78694 47937;47938;47939 47938 3 EALLDSLKK Unmodified 1015.5914 0.59136099 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.377 21.914 2 0.00083169 9053 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.44 72.309 439290000 70656000 70173000 74546000 0 0 0 51286000 50373000 58976000 0 0 0 9954200 7530600 7956000 0 0 0 13265000 11682000 12890000 0 0 0 4183 1960 4073 78695;78696;78697;78698;78699;78700;78701;78702;78703;78704;78705;78706 47940;47941;47942 47942 3 EALLGCASPECYQDQAAFLGASIGR Unmodified 2683.237 0.23703552 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.095 49.839 2;3 3.4211E-60 24254 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 257.35 249.17 504030000 74036000 60400000 52714000 0 0 0 46299000 43606000 46445000 0 0 0 26410000 23904000 26883000 0 0 0 34018000 36122000 33189000 0 0 0 4184 507 4074 78707;78708;78709;78710;78711;78712;78713;78714;78715;78716;78717;78718;78719;78720;78721;78722;78723;78724;78725;78726;78727;78728;78729;78730 47943;47944;47945;47946;47947;47948;47949;47950;47951;47952;47953 47946 11 EALMGVMGDK Unmodified 1049.4886 0.48855218 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.787 27.317 2 0.00063633 12682 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 90.15 86.742 139390000 9909400 4927800 5170200 0 1145200 0 11082000 7807400 11141000 2350100 3109500 2995600 7837300 10782000 8567900 0 0 0 15938000 15893000 14361000 1953900 2418100 1999500 4185 997 4075 78731;78732;78733;78734;78735;78736;78737;78738;78739;78740;78741;78742;78743;78744;78745;78746;78747;78748;78749 47954;47955;47956;47957;47958;47959;47960;47961 47958 8 EALNEQASK Unmodified 988.48254 0.48253882 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.674 11.5 2 0.0034369 2863 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.095 74.684 928470000 279110000 280230000 274390000 0 0 0 0 13254000 12988000 0 0 0 19694000 21293000 18639000 0 0 0 4043300 2240500 2592700 0 0 0 4186 1919 4076 78750;78751;78752;78753;78754;78755;78756;78757;78758;78759;78760 47962;47963 47962 0 EALPAHVAIWK Unmodified 1233.687 0.68699271 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.654 28.273 3 0.037072 13002 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 41.689 36.348 268360000 84677000 82514000 71510000 899680 630470 1084300 4249600 4426600 5597400 0 0 0 0 0 0 0 0 0 6678100 6089200 0 0 0 0 4187 49 4077 78761;78762;78763;78764;78765;78766;78767;78768;78769;78770;78771 47964;47965;47966 47965 2 EALQVDSLTAIQER Unmodified 1571.8155 0.81550028 1206 P23331 tdk Thymidine kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 37.186 35.469 2 1.9918E-11 17160 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.18 158.82 337770000 32582000 25869000 0 0 0 0 38349000 33370000 32374000 0 0 0 0 28249000 29238000 0 0 0 37695000 40056000 39986000 0 0 0 4188 1206 4078 78772;78773;78774;78775;78776;78777;78778;78779;78780;78781 47967;47968;47969;47970;47971 47971 5 EALSLWLAEQK Unmodified 1286.6871 0.68705229 758 P0ACY9 yebG Uncharacterized protein YebG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.601 42.086 2 1.206E-08 19553 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 179.51 135.16 328290000 21335000 21868000 18655000 0 0 0 27969000 24950000 25586000 0 0 0 25442000 26253000 24920000 0 0 0 36898000 39502000 34913000 0 0 0 4189 758 4079 78782;78783;78784;78785;78786;78787;78788;78789;78790;78791;78792;78793 47972;47973;47974;47975;47976 47976 5 EALSYLANATGK Unmodified 1236.635 0.63501672 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.473 28.061 2 2.646E-05 12959 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 140.16 121.85 283300000 29453000 17745000 19910000 998350 0 0 28838000 24988000 19990000 2199900 0 2407000 19732000 18519000 20284000 0 0 0 25040000 27943000 25251000 0 0 0 4190 1482 4080 78794;78795;78796;78797;78798;78799;78800;78801;78802;78803;78804;78805;78806;78807;78808 47977;47978;47979;47980;47981;47982;47983 47980 7 EALTFDDVLLVPAHSTVLPNTADLSTQLTK Unmodified 3208.6867 0.68672452 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.217 52.78 3 1.5161E-53 26100 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 231.74 231.11 4670200000 446630000 489740000 400480000 0 0 0 209860000 210700000 206480000 0 0 0 472630000 391760000 403590000 0 0 0 492040000 460570000 478470000 0 0 7267700 4191 788 4081 78809;78810;78811;78812;78813;78814;78815;78816;78817;78818;78819;78820;78821 47984;47985;47986;47987;47988;47989;47990;47991;47992;47993;47994;47995 47985 12 EALTFVQNYHPALR Unmodified 1657.8576 0.85763986 795 P0ADP0 yigB Flavin mononucleotide phosphatase YigB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.58 32.14 3 1.065E-05 15759 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.122 88.407 346360000 35950000 38456000 28280000 0 0 0 23527000 25919000 22289000 0 0 0 23142000 19828000 18923000 0 0 0 34271000 43475000 32302000 0 0 0 4192 795 4082 78822;78823;78824;78825;78826;78827;78828;78829;78830;78831;78832;78833 47996;47997 47996 2 EALVAGLK Unmodified 799.48035 0.48035398 892 P0AEW9 fruK 1-phosphofructokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.442 21.929 2 0.0068847 9340 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 84.244 53.575 483580000 44732000 41722000 42259000 0 0 0 19678000 27817000 30677000 0 0 0 41636000 38351000 42372000 0 0 0 57179000 46701000 50461000 0 0 0 4193 892 4083 78834;78835;78836;78837;78838;78839;78840;78841;78842;78843;78844;78845 47998;47999;48000;48001;48002;48003;48004;48005;48006 47998 9 EALVPFGK Unmodified 859.48035 0.48035398 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 30.117 28.75 2 0.014508 13427 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 71.715 59.284 987990000 140370000 124470000 118900000 0 0 696460 42930000 45196000 42594000 0 0 0 72464000 75589000 66746000 0 0 0 85627000 83723000 88681000 0 0 0 4194 181 4084 78846;78847;78848;78849;78850;78851;78852;78853;78854;78855;78856;78857;78858 48007;48008;48009;48010;48011;48012 48008 6 EALYPYSDDLTIVTK Unmodified 1726.8665 0.8665328 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.125 43.711 2 9.5553E-06 21407 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.24 108.84 282270000 64740000 55722000 49574000 0 0 0 19847000 17989000 20077000 0 0 0 8220300 6628400 8609400 0 0 0 12686000 9960000 8215500 0 0 0 4195 1278 4085 78859;78860;78861;78862;78863;78864;78865;78866;78867;78868;78869;78870 48013;48014;48015;48016;48017;48018 48014 6 EAMEPEFK Unmodified 979.43208 0.43208315 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.16 20.455 2 0.0019293 8038 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 104.75 104.75 7720800000 1161300000 1183700000 1123600000 0 0 0 553590000 512080000 525640000 1534300 1225200 0 408600000 389420000 351600000 0 0 0 521130000 509630000 477680000 0 0 0 4196 391 4086 78871;78872;78873;78874;78875;78876;78877;78878;78879;78880;78881;78882;78883;78884 48019;48020;48021;48022;48023;48024;48025;48026;48027;48028;48029;48030 48022 12 EAMEPEFK Oxidation (M) 995.427 0.42699778 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 14.433 15.208 2 0.016612 4715 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 74.127 74.127 132990000 19556000 15653000 16613000 0 0 0 14871000 0 12613000 0 0 0 8859800 10311000 9152700 0 0 0 8491600 8751300 8116500 0 0 0 4197 391 4086 78885;78886;78887;78888;78889;78890;78891;78892;78893;78894;78895 48031;48032;48033;48034;48035;48036;48037 48036 175 7 EAMSGCLACK Unmodified 1125.4617 0.4616855 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.634 15.154 2 0.1151 3645 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 40.021 36.275 22539000 3677300 0 0 1743700 1876200 1800600 2803600 2677000 0 1142500 1270100 1273500 0 0 0 0 0 0 0 0 3043700 703650 0 526880 4198 1937 4087 78896;78897;78898;78899;78900;78901;78902;78903;78904;78905;78906;78907 48038 48038 1 EANEEIDGDERPETSHLTR Unmodified 2196.9883 0.98833228 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 14.528 15.296 2;3;4 4.7365E-29 5056 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 212.24 212.24 1800300000 118400000 103650000 90243000 0 0 0 214120000 213850000 204220000 0 0 0 155040000 150260000 141320000 0 0 0 154990000 129150000 125110000 0 0 0 4199 1868 4088 78908;78909;78910;78911;78912;78913;78914;78915;78916;78917;78918;78919;78920;78921;78922;78923;78924;78925;78926;78927;78928;78929;78930;78931;78932;78933;78934;78935;78936;78937;78938;78939;78940;78941;78942;78943 48039;48040;48041;48042;48043;48044;48045;48046;48047;48048;48049;48050;48051;48052;48053;48054;48055;48056;48057;48058;48059;48060;48061;48062;48063;48064 48047 26 EANGLDPEVLAEINR Unmodified 1638.8213 0.82131394 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 43.291 41.906 2 6.9029E-06 20443 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 99.531 90.801 28679000 6519500 0 4791000 0 0 0 0 0 0 0 0 0 0 3593300 2950300 0 0 0 5502700 5321900 0 0 0 0 4200 1070 4089 78944;78945;78946;78947;78948;78949 48065 48065 1 EANLLQTGWAETLPNWR Unmodified 1997.9959 0.99592426 1837 P76223 ynjB Protein YnjB yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.596 52.167 2 1.3174E-18 24582 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 228.78 205.91 120170000 9200600 0 0 0 0 0 13052000 0 12763000 0 0 0 13971000 17446000 12913000 0 0 0 14587000 12920000 13316000 0 0 0 4201 1837 4090 78950;78951;78952;78953;78954;78955;78956;78957;78958 48066;48067;48068 48067 3 EANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIR Unmodified 3568.7322 0.73217116 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 1 1 1 1 2 2 1 55.706 54.344 3;4 3.3368E-10 21030 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 91.466 86.798 1238000000 146990000 170360000 166970000 0 2449000 0 40127000 29278000 39929000 58198000 0 47388000 87935000 15497000 13693000 0 64675000 62265000 155560000 115970000 20671000 0 0 0 4202 373 4091 78959;78960;78961;78962;78963;78964;78965;78966;78967;78968;78969;78970;78971;78972;78973;78974;78975;78976;78977;78978;78979;78980;78981;78982;78983;78984;78985;78986 48069;48070;48071;48072;48073;48074;48075;48076;48077;48078;48079 48069 11 EANVPVILCSSK Unmodified 1315.6806 0.6805867 1851 P76329 yedP Putative mannosyl-3-phosphoglycerate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 30.166 28.743 2 1.8766E-05 13229 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.51 105.2 274920000 64069000 61648000 55948000 0 0 0 32996000 28403000 27080000 0 0 0 0 0 4781200 0 0 0 0 0 0 0 0 0 4203 1851 4092 78987;78988;78989;78990;78991;78992;78993 48080;48081;48082;48083;48084;48085;48086 48085 6 EAPDDATFAR Unmodified 1091.4884 0.48835248 1837 P76223 ynjB Protein YnjB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.334 18.004 2 4.5777E-05 6602 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.9 134.33 89051000 4695700 4763500 3932100 0 0 0 12561000 12658000 11179000 0 0 0 7497400 7413100 0 0 0 0 9136400 6947200 8267000 0 0 0 4204 1837 4093 78994;78995;78996;78997;78998;78999;79000;79001;79002;79003;79004;79005 48087;48088;48089;48090;48091;48092;48093;48094;48095 48089 9 EAPDGVATEMLDEGLVR Unmodified 1800.8564 0.85637882 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 1 2 2 2 46.908 45.566 2;3 3.5697E-14 22173 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 219.43 197.44 843780000 26986000 0 153710000 0 0 0 83039000 87664000 72562000 0 0 0 57326000 59399000 51085000 0 1956800 0 79257000 85829000 84963000 0 0 0 4205 1348 4094 79006;79007;79008;79009;79010;79011;79012;79013;79014;79015;79016;79017;79018;79019;79020;79021;79022;79023;79024;79025;79026;79027 48096;48097;48098;48099;48100;48101;48102;48103;48104;48105;48106;48107;48108;48109;48110;48111;48112 48099 17 EAPEGTVK Unmodified 829.41815 0.41814765 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 10.702 11.229 1;2 0.005333 2218 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 86.794 65.809 21364000000 153930000 161930000 165630000 0 0 0 145570000 137080000 133100000 1571200000 165690000 1444300000 165290000 154370000 135080000 3803700000 3208900000 3442100000 214720000 165490000 178840000 2007400000 1808800000 2001200000 4206 463 4095 79028;79029;79030;79031;79032;79033;79034;79035;79036;79037;79038;79039;79040;79041;79042;79043;79044;79045;79046;79047;79048;79049;79050;79051;79052;79053;79054;79055;79056;79057;79058;79059;79060;79061;79062;79063;79064;79065;79066;79067;79068;79069 48113;48114;48115;48116;48117;48118;48119;48120;48121;48122;48123;48124;48125;48126 48116 13 EAPEGTVKDIK Unmodified 1185.6241 0.62411768 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 12.66 12.809 2;3 9.6561E-05 2901 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 128.27 68.92 1864500000 0 0 0 0 0 0 0 0 0 84499000 65179000 69458000 0 0 0 552930000 379830000 360830000 0 0 0 174280000 89550000 87957000 4207 463 4096 79070;79071;79072;79073;79074;79075;79076;79077;79078;79079;79080;79081;79082;79083;79084;79085 48127;48128;48129;48130;48131;48132;48133;48134;48135;48136;48137 48130 11 EAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTER Unmodified 4009.9289 0.92889842 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 1 1 1 49.195 48.194 3;4 5.0251E-29 17425 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 170.15 159.77 686910000 0 0 0 0 0 0 0 0 0 38468000 33627000 3478700 0 0 0 188900000 214040000 172150000 0 0 0 12392000 9602700 14245000 4208 463 4097 79086;79087;79088;79089;79090;79091;79092;79093;79094;79095;79096;79097 48138;48139;48140;48141;48142;48143;48144;48145;48146 48140 9 EAPFVFR Unmodified 864.44939 0.4493882 1397 P32684 rluF Ribosomal large subunit pseudouridine synthase F yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 32.537 31.13 2 0.14521 14919 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 56.89 51.13 29802000 0 0 4020900 0 0 0 3729000 3563400 4153700 0 0 0 0 1703600 2545900 0 0 0 3413700 3125500 3546600 0 0 0 4209 1397 4098 79098;79099;79100;79101;79102;79103;79104;79105;79106 48147 48147 0 EAPLAIELDHDK Unmodified 1349.6827 0.68269519 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 26.861 25.701 2;3 6.3261E-07 11622 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.61 183.1 8581400000 1156800000 1086400000 1058500000 5849300 11808000 7804600 352920000 371720000 333440000 28796000 24534000 19983000 487650000 506450000 507870000 28569000 24035000 29055000 818760000 799570000 845140000 27006000 23741000 24960000 4210 1726 4099 79107;79108;79109;79110;79111;79112;79113;79114;79115;79116;79117;79118;79119;79120;79121;79122;79123;79124;79125;79126;79127;79128;79129;79130;79131;79132;79133;79134;79135;79136;79137;79138;79139;79140;79141;79142;79143;79144;79145;79146;79147;79148;79149;79150;79151;79152;79153 48148;48149;48150;48151;48152;48153;48154;48155;48156;48157;48158;48159;48160;48161;48162;48163;48164;48165;48166;48167;48168;48169;48170;48171;48172;48173;48174;48175;48176;48177;48178;48179;48180;48181;48182;48183;48184 48169 37 EAPLAIELDHDKVMNMQAK Unmodified 2152.0657 0.065660084 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 32.424 31.009 3;4 5.4455E-14 10225 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 137.44 132.57 825490000 21716000 9708300 9996600 44789000 45520000 35833000 3619300 5823100 10712000 61699000 60719000 61190000 5905400 3840600 4221000 57005000 82125000 76241000 11819000 7999400 7568900 67222000 67194000 63021000 4211 1726 4100 79154;79155;79156;79157;79158;79159;79160;79161;79162;79163;79164;79165;79166;79167;79168;79169;79170;79171;79172;79173;79174;79175;79176;79177;79178;79179;79180;79181;79182;79183;79184;79185;79186;79187;79188;79189;79190;79191 48185;48186;48187;48188;48189;48190;48191;48192;48193;48194;48195;48196;48197;48198;48199;48200;48201;48202;48203;48204;48205;48206;48207;48208 48188 24 EAPQTLAQEVDR Unmodified 1355.6681 0.66810776 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.667 22.901 2 1.5216E-10 10070 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.57 120.72 1458900000 50638000 48544000 36027000 10392000 8878300 8842800 129500000 120900000 0 161040000 147990000 135790000 83058000 87109000 75734000 10642000 6153100 6415100 84763000 88921000 94423000 25297000 21423000 16389000 4212 1944 4101 79192;79193;79194;79195;79196;79197;79198;79199;79200;79201;79202;79203;79204;79205;79206;79207;79208;79209;79210;79211;79212;79213;79214;79215 48209;48210;48211;48212;48213;48214;48215;48216;48217;48218;48219;48220;48221;48222;48223;48224;48225;48226;48227;48228;48229;48230;48231;48232 48217 24 EAPVYACLVGK Unmodified 1205.6114 0.6114445 1456 P37095 pepB Peptidase B yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 32.102 30.695 2 0.0025468 13969 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 81.594 76.286 974930000 0 0 0 0 0 0 122700000 122110000 104850000 0 0 0 109380000 115720000 114700000 0 0 0 96933000 92514000 96033000 0 0 0 4213 1456 4102 79216;79217;79218;79219;79220;79221;79222;79223;79224 48233 48233 1 EAQIEQQLR Unmodified 1113.5778 0.57783619 1611 P54901 csiE Stationary phase-inducible protein CsiE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.85 17.427 2 1.6451E-05 6345 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 178.08 155.95 139060000 5795000 4966100 6330400 0 0 0 24807000 20966000 19139000 6345600 6422300 2123200 5446600 5812700 4063300 0 0 0 9119500 9393300 8331100 0 0 0 4214 1611 4103 79225;79226;79227;79228;79229;79230;79231;79232;79233;79234;79235;79236;79237;79238;79239 48234;48235;48236;48237;48238 48237 5 EAQKPDTASYR Unmodified 1264.6048 0.60477922 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 1 1 2 2 2 1 2 2 1 1 1 2 2 2 1 2 1 10.832 11.446 2;3 0.029697 2825 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.167 38.867 200370000 6037000 10668000 7439000 1553300 1352600 0 19803000 24126000 17885000 4511100 9041700 9040600 13223000 0 5472200 0 2713600 0 18848000 12051000 22731000 3439700 6621000 3815600 4215 439 4104 79240;79241;79242;79243;79244;79245;79246;79247;79248;79249;79250;79251;79252;79253;79254;79255;79256;79257;79258;79259;79260;79261;79262;79263;79264;79265;79266;79267;79268;79269 48239;48240;48241;48242;48243;48244 48243 2 EAQLAAR Unmodified 757.40825 0.40825167 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 10.95 11.661 2 0.0016551 3076 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.16 108.39 983840000 71355000 69910000 1657100 0 3116000 2769900 81529000 64416000 82255000 0 33117000 36973000 75994000 86074000 102930000 0 0 12800000 50388000 57816000 94445000 26376000 29918000 0 4216 1073 4105 79270;79271;79272;79273;79274;79275;79276;79277;79278;79279;79280;79281;79282;79283;79284;79285;79286;79287;79288;79289;79290;79291;79292 48245;48246 48246 1 EAQLDIQSQSQPPTEEQLR Unmodified 2196.0659 0.065854319 1522 P39310 ytfB Uncharacterized protein YtfB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.802 28.145 3 0.00010639 9561 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 67.449 65.405 46764000 0 0 0 2288400 2208200 2313200 0 6344500 5781400 3938800 3802400 4581200 0 3868400 0 0 0 0 6759100 0 4878400 0 0 0 4217 1522 4106 79293;79294;79295;79296;79297;79298;79299;79300;79301;79302;79303 48247;48248;48249;48250 48249 4 EAQLLER Unmodified 857.46068 0.46068117 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.214 16.9 2 0.00021051 5885 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 165.11 139 3599600000 348770000 328300000 296580000 0 0 0 244420000 317960000 283660000 3432900 0 190320000 216280000 193610000 170340000 0 0 0 383400000 329260000 293240000 0 0 0 4218 793 4107 79304;79305;79306;79307;79308;79309;79310;79311;79312;79313;79314;79315;79316;79317 48251;48252;48253;48254;48255;48256;48257;48258;48259;48260;48261;48262 48254 12 EAQPAGNSAMMDALAAAMGK Unmodified 1933.8696 0.86960281 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 51.842 50.61 2 7.2169E-11 24478 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.14 131.3 207690000 0 23211000 19529000 0 0 0 16440000 17889000 0 0 0 0 20609000 17931000 16364000 0 0 0 25140000 23273000 27303000 0 0 0 4219 1586 4108 79318;79319;79320;79321;79322;79323;79324;79325;79326;79327 48263;48264;48265;48266;48267;48268;48269;48270;48271;48272 48267 8 EAQQLLALENPLPLPAYER Unmodified 2164.1528 0.15281883 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 53.102 51.862 2;3 2.5403E-45 21097 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 324.94 319.86 3065800000 224130000 226540000 221610000 37456000 37567000 41177000 197280000 189560000 175950000 113270000 92726000 84960000 161910000 151090000 151080000 50313000 37650000 42145000 202730000 228620000 224150000 66595000 46982000 60316000 4220 61 4109 79328;79329;79330;79331;79332;79333;79334;79335;79336;79337;79338;79339;79340;79341;79342;79343;79344;79345;79346;79347;79348;79349;79350;79351;79352;79353;79354;79355;79356;79357;79358;79359;79360;79361;79362;79363;79364;79365;79366;79367;79368;79369;79370;79371;79372;79373;79374;79375 48273;48274;48275;48276;48277;48278;48279;48280;48281;48282;48283;48284;48285;48286;48287;48288;48289;48290;48291;48292;48293;48294;48295;48296;48297;48298;48299;48300;48301;48302;48303;48304;48305;48306 48279 32 EAQSAVAAAQALLEQR Unmodified 1654.8638 0.86384745 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 1 2 2 1 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 2 45.28 43.686 2;3 1.8847E-10 21718 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.75 100.14 166920000 5514300 3260000 5143100 0 2031000 1602000 23393000 19656000 20754000 11443000 11487000 9579200 7798300 7391400 3030800 0 971250 0 9199800 9920000 8761800 1157900 1998600 2829000 4221 1476 4110 79376;79377;79378;79379;79380;79381;79382;79383;79384;79385;79386;79387;79388;79389;79390;79391;79392;79393;79394;79395;79396;79397;79398;79399;79400;79401;79402;79403;79404;79405;79406;79407;79408;79409;79410;79411 48307;48308;48309;48310;48311;48312;48313 48310 7 EAQSLLEQIR Unmodified 1185.6354 0.63535107 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.099 30.759 2 3.3665E-09 14517 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 222.18 204.14 2756000000 163100000 146530000 124670000 0 0 0 374140000 344110000 346210000 0 0 0 197390000 176010000 190770000 0 0 0 243100000 216480000 233510000 0 0 0 4222 1437 4111 79412;79413;79414;79415;79416;79417;79418;79419;79420;79421;79422;79423 48314;48315;48316;48317;48318;48319;48320;48321;48322;48323;48324;48325 48317 12 EAQVAELAIPTAESQR Unmodified 1711.8741 0.87407779 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.653 33.089 2 5.1342E-14 15258 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 212.59 208.82 90364000 5041100 6975900 5109800 1186400 2003400 1578200 7079300 8531100 7735000 2781500 0 0 6483600 7075900 5790500 0 0 0 6924400 7544300 8524000 0 0 0 4223 1475 4112 79424;79425;79426;79427;79428;79429;79430;79431;79432;79433;79434;79435;79436;79437;79438;79439 48326;48327;48328;48329;48330;48331;48332 48331 7 EASAGNFADLLAHSDGLIK Unmodified 1927.964 0.96395543 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 46.836 45.462 3 5.807E-05 22617 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.514 77.122 2944600000 988840000 997050000 953690000 0 0 0 0 0 2595000 0 0 0 0 0 0 0 0 0 2409800 0 0 0 0 0 4224 703 4113 79440;79441;79442;79443;79444;79445;79446;79447 48333;48334;48335;48336;48337 48333 5 EASAQGKPPLDIHVLPR Unmodified 1827.0003 0.0002813566 1085 P13024 fdhE Protein FdhE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 26.996 25.785 3;4 0.0010789 11705 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.631 63.518 1424200000 161400000 158720000 137720000 1235200 1579100 0 102400000 102820000 102990000 1149200 0 0 88554000 96845000 101530000 0 0 0 129010000 121090000 117180000 0 0 0 4225 1085 4114 79448;79449;79450;79451;79452;79453;79454;79455;79456;79457;79458;79459;79460;79461;79462;79463;79464;79465;79466;79467;79468;79469;79470;79471;79472;79473;79474 48338;48339;48340;48341;48342;48343;48344;48345;48346;48347;48348;48349;48350;48351;48352;48353 48346 16 EASGEDLLR Unmodified 988.48254 0.48253882 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.051 20.467 2 0.0062219 8194 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 71.692 53.706 295480000 21947000 18597000 24385000 0 0 0 26572000 22034000 24734000 0 0 0 21042000 19833000 19360000 0 0 0 34483000 28515000 33979000 0 0 0 4226 280 4115 79475;79476;79477;79478;79479;79480;79481;79482;79483;79484;79485;79486 48354 48354 1 EASGFGADYNAMIR Unmodified 1500.6667 0.66672755 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.19 33.687 2 3.7696E-06 15391 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 118.28 113.67 1225300000 101630000 84421000 78940000 2056300 2256400 1954800 109760000 107090000 114790000 3733600 4079800 3921400 86057000 86293000 88514000 1529800 1204100 959540 111950000 120340000 106820000 2171500 2370400 2506400 4227 59 4116 79487;79488;79489;79490;79491;79492;79493;79494;79495;79496;79497;79498;79499;79500;79501;79502;79503;79504;79505;79506;79507;79508;79509;79510 48355;48356;48357;48358;48359;48360;48361;48362;48363;48364;48365;48366;48367;48368;48369;48370;48371;48372 48372 15 EASKDTLQAK Unmodified 1089.5666 0.5666028 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 2 2 1 1 2 2 9.5282 10.359 2;3 5.5664E-08 2446 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.82 110.12 654840000 224800000 122660000 218780000 0 0 0 6965700 4178600 4444000 0 0 0 7178300 7134900 1051900 0 0 0 12780000 21530000 23333000 0 0 0 4228 1254 4117 79511;79512;79513;79514;79515;79516;79517;79518;79519;79520;79521;79522;79523;79524;79525;79526;79527;79528;79529 48373;48374;48375;48376;48377;48378;48379;48380 48376 8 EASLLGHSGCR Unmodified 1185.5561 0.55605489 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 2 2 2 13.403 13.602 2;3 1.3964E-08 3288 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 179.37 176.12 233540000 0 0 0 0 0 0 0 0 0 14271000 13075000 7467200 0 0 0 27311000 21728000 19669000 3036600 0 3569600 47425000 28290000 47695000 4229 1448 4118 79530;79531;79532;79533;79534;79535;79536;79537;79538;79539;79540;79541;79542;79543;79544;79545;79546;79547;79548 48381;48382;48383;48384;48385;48386;48387;48388;48389;48390;48391;48392;48393;48394 48393 14 EASVATATQVQGK Unmodified 1288.6623 0.6622941 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.202 14.068 2 2.2321E-09 4241 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 175.93 170.99 1054400000 306240000 258280000 281960000 0 0 0 18726000 22452000 24802000 0 0 0 19407000 19950000 18325000 0 0 0 33513000 28973000 21782000 0 0 0 4230 1111 4119 79549;79550;79551;79552;79553;79554;79555;79556;79557;79558;79559;79560 48395;48396;48397;48398;48399 48399 5 EATEQSQPAAAPEAPAAEQGE Unmodified 2080.9185 0.91852138 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 22.435 21.909 2;3 9.8388E-11 9351 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 192.68 191.04 613740000 28907000 26471000 24292000 7486400 6323900 2755800 44231000 46365000 39639000 7153200 5142000 4727100 56428000 42156000 49361000 0 0 0 65995000 69494000 81624000 3910900 0 1276600 4231 107 4120 79561;79562;79563;79564;79565;79566;79567;79568;79569;79570;79571;79572;79573;79574;79575;79576;79577;79578;79579;79580;79581;79582;79583;79584;79585;79586;79587;79588;79589;79590;79591;79592;79593;79594;79595;79596;79597;79598 48400;48401;48402;48403;48404;48405;48406;48407;48408;48409;48410;48411;48412;48413;48414;48415;48416;48417;48418;48419 48403 20 EATGNLTR Unmodified 860.43519 0.4351947 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.012 11.819 2 0.00071397 2953 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.28 68.997 1889300000 144160000 146470000 151650000 0 0 0 223240000 207960000 211620000 0 0 0 174270000 150620000 131190000 0 0 0 185140000 0 163020000 0 0 0 4232 258 4121 79599;79600;79601;79602;79603;79604;79605;79606;79607;79608;79609 48420;48421;48422;48423;48424 48420 5 EATIDVNALAAK Unmodified 1214.6507 0.65066678 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.885 29.289 2 3.3172E-05 13627 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 112.8 102.04 385990000 16152000 15351000 15749000 7092800 5764000 6672800 24796000 25356000 21872000 19400000 16053000 15405000 26546000 23181000 22073000 0 0 0 29523000 34412000 31464000 11098000 9220800 8806800 4233 819 4122 79610;79611;79612;79613;79614;79615;79616;79617;79618;79619;79620;79621;79622;79623;79624;79625;79626;79627;79628;79629;79630 48425;48426;48427;48428;48429;48430;48431;48432;48433;48434;48435;48436;48437;48438;48439 48436 15 EATIGVTDSLVHLFANR Unmodified 1841.9636 0.9635615 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.342 48.916 3 1.1841E-06 24146 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 85.734 84.09 88692000 5562900 9260600 5462000 1352100 1285500 846880 7758600 8244000 4729600 2254200 2200600 1642100 4924900 5028600 4844800 0 0 0 8468100 7640200 7186500 0 0 0 4234 1259 4123 79631;79632;79633;79634;79635;79636;79637;79638;79639;79640;79641;79642;79643;79644;79645;79646;79647;79648 48440;48441;48442;48443;48444 48441 5 EATPEGDR Unmodified 873.38282 0.38282478 1345 P30749 moaE Molybdopterin synthase catalytic subunit yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 6.7004 7.5394 2 0.086971 1722 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 58.604 58.604 31756000 6938500 8620200 8301800 0 0 0 0 0 0 0 0 0 1996500 2374400 0 0 0 0 1218700 1127300 1179200 0 0 0 4235 1345 4124 79649;79650;79651;79652;79653;79654;79655;79656 48445;48446;48447 48445 0 EAVAATGATASVIYVPAPFCK Unmodified 2122.0769 0.076876698 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.614 46.214 2 2.1454E-34 22550 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 268.35 265.72 217220000 23469000 23031000 19942000 0 0 0 12616000 9854300 10392000 0 0 0 11442000 10462000 9329000 0 0 0 27208000 30781000 28697000 0 0 0 4236 1013 4125 79657;79658;79659;79660;79661;79662;79663;79664;79665;79666;79667;79668 48448;48449;48450;48451;48452;48453;48454;48455;48456 48451 9 EAVADIGYPCIVK Unmodified 1433.7225 0.72245152 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 36.965 35.526 2 0.00029695 17123 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.054 79.756 16992000 6854300 5479600 4658400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4237 1412 4126 79669;79670;79671 48457 48457 1 EAVADIGYPCIVKPVMSSSGK Unmodified 2207.0966 0.096625862 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 37.795 36.249 2;3 7.0774E-15 17644 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 177.88 169.35 380710000 116380000 106290000 114140000 0 0 0 0 3988900 0 0 0 0 6108700 4359700 5367000 0 0 0 8789600 8331900 6955100 0 0 0 4238 1412 4127 79672;79673;79674;79675;79676;79677;79678;79679;79680;79681;79682;79683;79684 48458;48459;48460;48461 48459 4 EAVDFLHYYAGQVR Unmodified 1666.8104 0.81035532 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 40.477 38.832 2;3 4.05E-45 18869 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 283.58 279.33 1103600000 60970000 57330000 52180000 9278600 9798200 8795500 50282000 47770000 50369000 0 15472000 21907000 41717000 40479000 39816000 10831000 8739500 12264000 142280000 144460000 148480000 38196000 35445000 56765000 4239 215 4128 79685;79686;79687;79688;79689;79690;79691;79692;79693;79694;79695;79696;79697;79698;79699;79700;79701;79702;79703;79704;79705;79706;79707;79708;79709;79710;79711;79712;79713;79714;79715;79716;79717;79718;79719;79720;79721;79722 48462;48463;48464;48465;48466;48467;48468;48469;48470;48471;48472;48473;48474;48475;48476;48477;48478;48479;48480;48481;48482;48483;48484;48485;48486;48487;48488;48489;48490;48491 48477 28 EAVDTTSQPVATEK Unmodified 1474.7151 0.71511753 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.824 14.561 2 6.718E-35 4646 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 254.19 252.04 323070000 9131800 10248000 10320000 3159400 3145200 3158700 37641000 34838000 34688000 4990100 4767100 4888000 22632000 19732000 19911000 0 0 0 34157000 34660000 28497000 0 0 2501400 4240 201 4129 79723;79724;79725;79726;79727;79728;79729;79730;79731;79732;79733;79734;79735;79736;79737;79738;79739;79740;79741 48492;48493;48494;48495;48496;48497;48498;48499;48500;48501;48502;48503;48504;48505 48496 14 EAVEGAK Unmodified 702.35482 0.35481911 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 4.9499 5.8602 2 0.013832 1197 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.377 14.979 1535600000 0 0 0 0 0 0 209190000 201150000 204150000 0 0 0 160630000 141460000 131650000 0 0 0 162460000 163960000 161000000 0 0 0 4241 490 4130 79742;79743;79744;79745;79746;79747;79748;79749;79750 48506;48507 48506 2 EAVEIVSEVLK Unmodified 1214.6758 0.6758189 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.562 39.842 2 0.00022226 18754 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.65 93.715 2460700000 192370000 180090000 166940000 0 0 845430 235690000 212910000 199800000 0 0 684400 201920000 186930000 174500000 0 0 0 228610000 259840000 219600000 0 0 0 4242 1450 4131 79751;79752;79753;79754;79755;79756;79757;79758;79759;79760;79761;79762;79763;79764 48508;48509;48510;48511;48512;48513;48514;48515;48516;48517;48518;48519 48517 11 EAVESVLAQHGLADCVHYVGQAVSGDR Unmodified 2866.3668 0.36680414 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 39.969 38.327 3;4 1.4521E-107 18726 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 323.8 321.05 839280000 195040000 193620000 197720000 0 0 0 8910900 20983000 21912000 0 0 0 29820000 28989000 28048000 0 0 0 39244000 34490000 40508000 0 0 0 4243 1107 4132 79765;79766;79767;79768;79769;79770;79771;79772;79773;79774;79775;79776;79777;79778;79779;79780;79781;79782;79783;79784;79785;79786;79787 48520;48521;48522;48523;48524;48525;48526;48527 48521 8 EAVFQYALYEPGLLEPEGVSK Unmodified 2338.1733 0.1732795 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 53.906 52.526 2 8.2113E-28 24764 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 193.96 191.46 132040000 17028000 13792000 10723000 0 0 0 0 0 0 0 0 0 12632000 14239000 11666000 0 0 0 15467000 19485000 17011000 0 0 0 4244 1313 4133 79788;79789;79790;79791;79792;79793;79794;79795;79796 48528;48529;48530;48531;48532 48531 5 EAVLCEWTETVNTPSAQTR Unmodified 2191.0215 0.021546663 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 40.54 38.779 2;3 3.2032E-37 18931 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 312.05 302.85 176740000 0 0 0 0 0 0 15143000 11750000 14276000 0 0 0 24715000 24795000 7535400 0 0 0 25987000 28025000 24511000 0 0 0 4245 180 4134 79797;79798;79799;79800;79801;79802;79803;79804;79805;79806;79807;79808;79809;79810;79811;79812;79813 48533;48534;48535;48536;48537;48538;48539;48540;48541 48535 9 EAVMDSVVR Unmodified 1004.4961 0.4960804 894 P0AEX5 prkB Probable phosphoribulokinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 21.867 21.904 2 0.16029 8890 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 41.448 36.138 121360000 20345000 22075000 0 0 0 0 12180000 11806000 12750000 0 0 0 7454700 7784200 5468600 0 0 0 0 9218300 12274000 0 0 0 4246 894 4135 79814;79815;79816;79817;79818;79819;79820;79821;79822;79823 48542 48542 0 EAVMIVPIVDDHLILIR Unmodified 1945.1071 0.10705461 1581 P45799 nudE ADP compounds hydrolase NudE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.015 52.575 3 6.3694E-11 24710 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 147.1 146.84 444710000 64501000 54893000 47512000 0 0 0 25559000 15829000 21517000 0 0 0 28037000 23252000 21394000 0 0 0 49431000 42789000 49997000 0 0 0 4247 1581 4136 79824;79825;79826;79827;79828;79829;79830;79831;79832;79833;79834;79835 48543;48544;48545;48546;48547;48548;48549;48550;48551 48551 9 EAVNLIQSLDPR Unmodified 1353.7252 0.72522871 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 41.091 40.201 3 0.013334 14158 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 51.013 24.481 14734000 2713100 3220500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2850800 3794900 2154500 0 0 0 0 0 4248 1249 4137 79836;79837;79838;79839;79840 48552;48553 48552 2 EAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVR Unmodified 3531.8573 0.8573121 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 53.409 53.464 3;4 4.4411E-25 20794 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 167.97 163.02 508400000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 161450000 132900000 214050000 0 0 0 0 0 0 4249 1249 4138 79841;79842;79843;79844;79845;79846 48554;48555;48556;48557;48558;48559 48554 6 EAVNQVIALLDSGALR Unmodified 1667.9206 0.92063405 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 54.503 53.112 2;3 9.4096E-24 26402 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 256.47 242.81 5370900000 615810000 552540000 544210000 0 0 0 431800000 372730000 399930000 0 0 0 423670000 398080000 331190000 928050 0 0 494560000 407130000 398330000 0 0 0 4250 512 4139 79847;79848;79849;79850;79851;79852;79853;79854;79855;79856;79857;79858;79859;79860;79861;79862;79863;79864;79865;79866;79867;79868;79869;79870;79871 48560;48561;48562;48563;48564;48565;48566;48567;48568;48569;48570;48571;48572;48573;48574;48575;48576;48577 48561 18 EAVPAGFETFK Unmodified 1194.5921 0.59208927 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 33.104 31.679 2 0.00020622 15141 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 103.7 92.06 2998300000 298590000 290280000 263150000 0 0 0 377820000 377810000 370250000 0 0 0 162290000 134160000 135040000 0 0 0 185710000 211670000 191580000 0 0 0 4251 1109 4140 79872;79873;79874;79875;79876;79877;79878;79879;79880;79881;79882;79883;79884 48578;48579;48580;48581;48582;48583;48584;48585;48586;48587;48588;48589 48580 9 EAVQFLTGEYR Unmodified 1311.6459 0.64591575 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.845 33.397 2 4.0558E-15 16182 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 223.84 164.49 2279500000 94125000 97977000 84517000 0 0 0 330650000 291660000 301290000 0 0 0 169450000 175450000 158660000 0 0 0 186190000 201890000 187650000 0 0 0 4252 167 4141 79885;79886;79887;79888;79889;79890;79891;79892;79893;79894;79895;79896 48590;48591;48592;48593;48594;48595;48596;48597;48598;48599;48600;48601 48592 12 EAVSEWLYR Unmodified 1151.5611 0.56112349 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.939 34.474 2 9.862E-06 13181 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 166.96 166.96 214470000 5129600 5565000 0 0 0 0 0 0 0 5588900 7508100 8363800 2704400 2284100 2784300 32055000 19765000 21896000 4416300 6500000 7835600 25953000 28184000 27934000 4253 1448 4142 79897;79898;79899;79900;79901;79902;79903;79904;79905;79906;79907;79908;79909;79910;79911;79912;79913 48602;48603;48604;48605;48606;48607;48608 48608 7 EAWAQWQHK Unmodified 1182.557 0.55704117 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 2 2 1 1 1 2 2 1 19.296 19.635 2;3 5.7115E-05 7760 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.37 163.2 1134100000 71679000 80880000 64203000 1357400 1270900 0 144070000 127480000 124680000 3939600 4134000 3519800 41676000 37122000 34899000 0 0 0 170660000 158620000 63936000 0 0 0 4254 451 4143 79914;79915;79916;79917;79918;79919;79920;79921;79922;79923;79924;79925;79926;79927;79928;79929;79930;79931;79932;79933;79934;79935;79936;79937;79938 48609;48610;48611;48612;48613;48614;48615;48616;48617;48618;48619;48620;48621;48622;48623;48624 48609 16 EAWEFTR Unmodified 937.42938 0.42938104 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.038 26.891 2 0.0028019 12665 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.63 98.864 312850000 23348000 20009000 19170000 0 0 0 34234000 29901000 34254000 0 0 0 21607000 21203000 23104000 0 0 0 30073000 27537000 28407000 0 0 0 4255 1778 4144 79939;79940;79941;79942;79943;79944;79945;79946;79947;79948;79949;79950 48625;48626;48627;48628;48629;48630;48631;48632;48633;48634;48635 48625 11 EAYAADITYGTNNEYGFDYLR Unmodified 2445.0761 0.076084654 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 1 2 49.021 47.687 2;3 1.0257E-42 19275 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 291.51 286.66 167800000 0 0 3336600 0 0 1730100 16945000 7997900 5351700 6104100 15841000 11252000 10977000 8504800 9715900 11944000 0 0 14989000 15590000 9464900 7496000 3429600 7127100 4256 1057 4145 79951;79952;79953;79954;79955;79956;79957;79958;79959;79960;79961;79962;79963;79964;79965;79966;79967;79968;79969;79970;79971;79972;79973;79974;79975;79976;79977;79978;79979;79980 48636;48637;48638;48639;48640;48641;48642 48637 7 EAYAADITYGTNNEYGFDYLRDNMAFSPEER Unmodified 3621.5631 0.56305693 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 50.916 49.923 3 4.8072E-43 19915 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 215.79 214.02 57559000 0 0 0 1627900 1774100 1814900 0 0 0 10039000 9232500 8921100 0 0 0 6226900 3497900 3209500 0 0 0 0 6041400 5174500 4257 1057 4146 79981;79982;79983;79984;79985;79986;79987;79988;79989;79990;79991 48643;48644;48645;48646;48647 48645 5 EAYAQLSADDENASFAVR Unmodified 1955.8861 0.88609904 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 35.396 33.688 2 9.9238E-56 16196 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 289.45 286.12 170410000 12237000 17138000 10465000 4278800 3095400 3337800 0 14654000 3580400 3752200 4417800 4044300 8701600 10399000 8665600 0 0 0 14669000 14413000 18744000 4418300 4370800 5026500 4258 1210 4147 79992;79993;79994;79995;79996;79997;79998;79999;80000;80001;80002;80003;80004;80005;80006;80007;80008;80009;80010;80011;80012;80013 48648;48649;48650;48651;48652;48653;48654;48655;48656;48657;48658;48659;48660;48661;48662;48663;48664;48665;48666;48667;48668 48654 19 EAYELVAPILTK Unmodified 1345.7493 0.74931819 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 44.916 43.286 2;3 3.7803E-08 21094 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 160.53 159.7 17355000000 935540000 934390000 932830000 4941600 3933900 4192200 1644300000 1555900000 1430000000 4609800 3959500 3910900 1637200000 1430100000 1351300000 0 0 0 1830000000 1815500000 1820000000 5143500 3812600 3767200 4259 24 4148 80014;80015;80016;80017;80018;80019;80020;80021;80022;80023;80024;80025;80026;80027;80028;80029;80030;80031;80032;80033;80034;80035;80036;80037;80038;80039;80040;80041;80042;80043;80044;80045;80046 48669;48670;48671;48672;48673;48674;48675;48676;48677;48678;48679;48680;48681;48682;48683;48684;48685;48686;48687;48688;48689;48690;48691;48692;48693;48694;48695 48675 27 EAYEQTLPLLSEYSTWVGQHEGLYK Unmodified 2940.4182 0.41815424 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.222 52.773 3 4.6225E-22 26134 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 162.72 162.6 795330000 103290000 100850000 84219000 0 0 0 40830000 45720000 51614000 0 0 0 51157000 59068000 51943000 0 0 0 69282000 75060000 62297000 0 0 0 4260 1298 4149 80047;80048;80049;80050;80051;80052;80053;80054;80055;80056;80057;80058 48696;48697;48698;48699;48700;48701;48702;48703;48704;48705;48706;48707 48702 12 EAYEVLTDSQK Unmodified 1281.6089 0.60886155 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.992 22.373 2 3.3741E-14 9700 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 209.21 203.18 274530000 0 32522000 28740000 1864300 1804300 1366900 22277000 23880000 22091000 0 0 0 15764000 15760000 0 0 0 0 34003000 33897000 27998000 4294800 4192600 4080400 4261 190 4150 80059;80060;80061;80062;80063;80064;80065;80066;80067;80068;80069;80070;80071;80072;80073;80074;80075;80076 48708;48709;48710;48711;48712;48713;48714;48715;48716;48717 48710 9 EAYEVLTDSQKR Unmodified 1437.71 0.70997257 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 17.963 18.151 2;3 3.1442E-08 5625 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 170.85 167.87 177330000 0 0 0 12724000 12911000 10237000 0 0 0 32289000 28258000 23514000 0 0 0 9490400 7299400 7183100 0 0 0 22808000 5247000 5372000 4262 190 4151 80077;80078;80079;80080;80081;80082;80083;80084;80085;80086;80087;80088;80089;80090;80091;80092;80093;80094;80095;80096;80097;80098 48718;48719;48720;48721;48722;48723;48724;48725;48726;48727;48728;48729;48730 48719 13 EAYIVTIEK Unmodified 1064.5754 0.57537657 604 P0AAN5 yaiA Uncharacterized protein YaiA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 28.339 27.087 2 0.0013284 12505 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.51 93.568 416090000 94344000 71396000 73499000 0 0 0 43652000 46845000 46104000 0 0 0 14417000 12632000 13205000 0 0 0 0 0 0 0 0 0 4263 604 4152 80099;80100;80101;80102;80103;80104;80105;80106;80107 48731;48732;48733 48731 3 EAYQNPGILAAVDR Unmodified 1515.7682 0.76815616 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.155 34.598 2 8.4224E-08 16948 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 153.34 138.08 169230000 22092000 25152000 20489000 0 0 0 11158000 13457000 9513700 0 0 0 12575000 12035000 9820900 0 0 0 10399000 9511800 13027000 0 0 0 4264 1399 4153 80108;80109;80110;80111;80112;80113;80114;80115;80116;80117;80118;80119 48734;48735;48736;48737;48738;48739;48740;48741;48742 48735 9 ECDALFALLDAELAK Unmodified 1677.8284 0.82837315 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 0 By MS/MS 1 55.522 54.17 2 0.00025782 25860 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 82.362 65.788 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4265 713 4154 80120 48743 48743 1 ECDLAGAIK Unmodified 975.46953 0.46953129 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.852 21.089 2 0.0010092 8220 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.531 55.427 6026300000 515350000 507440000 502720000 0 0 0 826750000 749890000 784480000 3421200 2752800 0 374110000 307770000 374580000 0 0 0 331710000 384380000 360900000 0 0 0 4266 277 4155 80121;80122;80123;80124;80125;80126;80127;80128;80129;80130;80131;80132;80133;80134 48744;48745;48746;48747;48748;48749;48750;48751;48752;48753;48754;48755 48752 12 ECEAIVLTDSSK Unmodified 1350.6337 0.63369609 1808 P76034 yciT Uncharacterized HTH-type transcriptional regulator YciT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 24.58 23.573 2 0.0008329 9922 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 79.693 76.69 63367000 12487000 12360000 10386000 0 0 0 7811500 4338000 6924900 0 0 0 3292500 2573100 3195000 0 0 0 0 0 0 0 0 0 4267 1808 4156 80135;80136;80137;80138;80139;80140;80141;80142;80143 48756 48756 1 ECFEAYLPASVAWR Unmodified 1697.7872 0.78717704 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 1 1 1 2 2 1 1 50.719 49.303 2;3 1.634E-14 24323 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 231.42 228.69 1483200000 178170000 166110000 180470000 0 1248000 0 308680000 295650000 273980000 3989000 3977000 4099900 5736900 23173000 23364000 0 0 0 7089400 7479400 0 0 0 0 4268 1191 4157 80144;80145;80146;80147;80148;80149;80150;80151;80152;80153;80154;80155;80156;80157;80158;80159;80160;80161;80162;80163;80164;80165;80166;80167 48757;48758;48759;48760;48761;48762;48763;48764;48765;48766;48767;48768;48769;48770 48759 12 ECITSMVSR Oxidation (M) 1097.4845 0.48452943 996 P0AG86 secB Protein-export protein SecB yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1 2 1 1 1 2 1 3 3 3 1 1 1 20.284 20.073 2 0.01922 6854 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 64.42 57.361 137160000 3610600 2583600 3835200 2602500 1601200 1629100 0 14052000 5546300 0 0 1993000 6308400 7736200 4294300 22115000 21450000 23673000 3784400 4800800 5549400 0 0 0 4269 996 4158 80168;80169;80170;80171;80172;80173;80174;80175;80176;80177;80178;80179;80180;80181;80182;80183;80184;80185;80186;80187;80188;80189;80190;80191;80192;80193;80194 48771;48772;48773;48774;48775;48776;48777;48778 48777 460 7 ECITSMVSR Unmodified 1081.4896 0.48961481 996 P0AG86 secB Protein-export protein SecB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 22.975 22.375 1;2 1.329E-05 9554 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 162.25 140.57 15788000000 768240000 743690000 715250000 116580000 118780000 119010000 883810000 1013900000 1070300000 119990000 135580000 179900000 954320000 835640000 882630000 1516100000 1104500000 1224000000 919310000 907030000 918650000 200430000 167690000 172310000 4270 996 4158 80195;80196;80197;80198;80199;80200;80201;80202;80203;80204;80205;80206;80207;80208;80209;80210;80211;80212;80213;80214;80215;80216;80217;80218;80219;80220;80221;80222;80223;80224;80225;80226;80227;80228;80229;80230;80231;80232;80233;80234;80235;80236;80237;80238;80239;80240 48779;48780;48781;48782;48783;48784;48785;48786;48787;48788;48789;48790;48791;48792;48793;48794;48795;48796;48797;48798;48799;48800;48801;48802;48803;48804;48805;48806;48807;48808;48809;48810 48796 31 ECLAELDQYINQNFTLACEK Unmodified 2458.1145 0.11446077 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 1 53.415 51.979 2;3 6.4011E-12 24692 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 129.77 129.41 164630000 20622000 15387000 14623000 0 0 0 8311700 11271000 12725000 0 0 0 15738000 11734000 12921000 0 0 0 16865000 16058000 8377200 0 0 0 4271 1565 4159 80241;80242;80243;80244;80245;80246;80247;80248;80249;80250;80251;80252;80253;80254;80255;80256;80257;80258;80259;80260;80261;80262 48811;48812 48812 1 ECNNQATQQSLK Unmodified 1419.6412 0.64124108 955 P0AFM4 psiF Phosphate starvation-inducible protein PsiF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.077 11.902 2 7.974E-12 3036 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 190.88 179.72 458770000 47554000 55824000 47142000 0 0 0 40200000 45520000 49276000 0 0 0 31775000 27522000 24084000 0 0 0 28640000 33184000 28049000 0 0 0 4272 955 4160 80263;80264;80265;80266;80267;80268;80269;80270;80271;80272;80273;80274 48813;48814;48815;48816;48817;48818;48819;48820;48821;48822 48817 10 ECRPLSK Unmodified 888.44874 0.44873627 989 P0AG63 rpsQ 30S ribosomal protein S17 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 8.9102 9.4647 2 0.0014732 2233 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.12 82.333 1116300000 122220000 79537000 46254000 0 14015000 12384000 0 122460000 122810000 37233000 48191000 36799000 31671000 0 22819000 29925000 16576000 16470000 97416000 98444000 106070000 23293000 16472000 15211000 4273 989 4161 80275;80276;80277;80278;80279;80280;80281;80282;80283;80284;80285;80286;80287;80288;80289;80290;80291;80292;80293;80294;80295;80296 48823;48824;48825;48826;48827;48828;48829;48830;48831;48832;48833;48834;48835;48836;48837;48838;48839;48840;48841;48842 48832 20 ECSEAQGK Unmodified 907.37055 0.37054553 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5.067 5.9033 2 0.0031662 893 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 94.407 85.635 64083000 5239900 4331700 3484400 0 0 0 0 0 0 0 0 0 9129400 8979300 6872200 0 0 0 9770600 7364500 8910700 0 0 0 4274 180 4162 80297;80298;80299;80300;80301;80302;80303;80304;80305 48843;48844;48845;48846;48847;48848;48849;48850 48844 8 ECSHYCELVSSPEQIPQVLAIAMR Unmodified 2816.3296 0.3295557 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.524 51.297 3 2.5185E-30 25284 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.39 180.05 754380000 137760000 150570000 128400000 0 0 12102000 86280000 0 75677000 0 0 0 23312000 22634000 22740000 0 0 0 29742000 32859000 32305000 0 0 0 4275 147 4163 80306;80307;80308;80309;80310;80311;80312;80313;80314;80315;80316;80317 48851;48852;48853;48854;48855;48856;48857;48858;48859;48860;48861;48862 48852 12 ECTLETLEEMLEK Unmodified 1623.7372 0.73717488 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 3 2 4 2 2 2 2 2 3 1 1 1 54.221 52.994 2;3 2.7081E-07 25071 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 147.74 136.65 19066000000 2222700000 2077100000 2056500000 46932000 42867000 56840000 1287200000 1113300000 864320000 22053000 22902000 19399000 158730000 1824700000 1704100000 441880000 489890000 612510000 1949300000 1811600000 168580000 17053000 25123000 30156000 4276 728 4164 80318;80319;80320;80321;80322;80323;80324;80325;80326;80327;80328;80329;80330;80331;80332;80333;80334;80335;80336;80337;80338;80339;80340;80341;80342;80343;80344;80345;80346;80347;80348;80349;80350;80351;80352;80353;80354;80355;80356;80357;80358;80359;80360;80361;80362;80363 48863;48864;48865;48866;48867;48868;48869;48870;48871;48872;48873;48874;48875;48876;48877;48878;48879;48880;48881;48882;48883;48884;48885;48886;48887;48888;48889;48890;48891;48892;48893;48894;48895;48896;48897;48898 48894 36 ECTLETLEEMLEK Oxidation (M) 1639.7321 0.7320895 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.166 44.864 2 4.8025E-05 21818 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 100.55 96.7 132520000 15699000 12249000 12256000 837860 0 0 8806000 9076100 8854000 0 0 0 9890300 8070400 7784600 0 2674100 3107100 10049000 11174000 10254000 1740800 0 0 4277 728 4164 80364;80365;80366;80367;80368;80369;80370;80371;80372;80373;80374;80375;80376;80377;80378;80379 48899;48900;48901;48902;48903;48904;48905;48906;48907;48908 48900 377 7 ECTLETLEEMLEKLEVVVNER Unmodified 2562.2557 0.25570528 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 1 By MS/MS By MS/MS 1 1 55.986 56.013 3 1.2813E-21 22028 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 161.08 158.76 978180000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 501050000 477130000 0 0 0 0 0 0 0 4278 728 4165 80380;80381 48909;48910 48909 2 EDAHALGIFLR Unmodified 1240.6564 0.65642086 907 P0AF26 narJ Nitrate reductase molybdenum cofactor assembly chaperone NarJ yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 2 2 1 1 1 36.614 34.96 2;3 1.6874E-05 16706 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 139.74 134.77 368390000 18033000 14982000 14395000 1135200 687910 0 16798000 17724000 16568000 2868500 2368300 2840000 30646000 30002000 21768000 0 1108200 0 46851000 54040000 65887000 3047700 3010900 3633300 4279 907 4166 80382;80383;80384;80385;80386;80387;80388;80389;80390;80391;80392;80393;80394;80395;80396;80397;80398;80399;80400;80401;80402;80403;80404;80405;80406;80407 48911;48912;48913;48914;48915;48916;48917;48918;48919;48920;48921;48922;48923;48924;48925 48921 15 EDAQFITWEHPLIR Unmodified 1753.8788 0.87876924 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 4 4 4 2 2 2 4 5 4 2 2 2 3 4 3 42.175 40.602 2;3;4 1.6518E-27 14199 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 276.95 252.1 21307000000 80375000 70528000 67061000 0 1435900 1348400 85775000 71974000 82314000 2458700000 2239600000 2104400000 72085000 76223000 63625000 3236400000 2655000000 2850000000 95005000 102580000 100340000 1685500000 1528700000 1578300000 4280 1616 4167 80408;80409;80410;80411;80412;80413;80414;80415;80416;80417;80418;80419;80420;80421;80422;80423;80424;80425;80426;80427;80428;80429;80430;80431;80432;80433;80434;80435;80436;80437;80438;80439;80440;80441;80442;80443;80444;80445;80446;80447;80448;80449;80450;80451;80452;80453;80454;80455;80456;80457;80458;80459;80460;80461;80462;80463;80464;80465;80466;80467;80468 48926;48927;48928;48929;48930;48931;48932;48933;48934;48935;48936;48937;48938;48939;48940;48941;48942;48943;48944;48945;48946;48947;48948;48949;48950;48951;48952;48953;48954;48955;48956;48957;48958;48959;48960;48961;48962;48963;48964;48965;48966;48967;48968;48969;48970;48971;48972;48973;48974;48975;48976;48977;48978;48979;48980;48981;48982;48983;48984 48936 59 EDAQLLYGFNNK Unmodified 1410.6779 0.67794416 386 P0A809 ruvA Holliday junction ATP-dependent DNA helicase RuvA yes yes 0 0 0 By MS/MS By matching 1 1 34.8 34.857 2 0.039602 12538 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 45.161 42.022 4548500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3311600 0 1236900 0 0 0 0 0 0 4281 386 4168 80469;80470 48985 48985 1 EDATEDAK Unmodified 877.36651 0.36650601 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.8179 5.7163 2 0.00011452 1097 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.57 132.57 177830000 0 0 0 0 0 0 23162000 17163000 25001000 0 0 0 23874000 20425000 17549000 0 0 0 26936000 0 23723000 0 0 0 4282 1742 4169 80471;80472;80473;80474;80475;80476;80477;80478;80479 48986;48987;48988;48989;48990;48991 48987 6 EDAVEFFAK Unmodified 1054.4971 0.49712625 799 P0ADQ2 yiiD Uncharacterized protein YiiD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.53 33.973 2 0.00056384 16374 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.01 101.53 225450000 31775000 30040000 26540000 0 0 0 18380000 18205000 18061000 0 0 0 11261000 12309000 12038000 0 0 0 16504000 15968000 14371000 0 0 0 4283 799 4170 80480;80481;80482;80483;80484;80485;80486;80487;80488;80489;80490;80491 48992;48993;48994;48995;48996;48997;48998;48999;49000 48995 9 EDDVGNIVHK Unmodified 1124.5462 0.54620171 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 14.061 14.883 3 0.16236 4570 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 14.679 9.7853 87775000 8795200 9345100 6211300 0 0 0 6151300 10045000 7697200 0 0 0 0 6093400 6793800 0 0 0 9227400 9125400 8290300 0 0 0 4284 1856 4171 80492;80493;80494;80495;80496;80497;80498;80499;80500;80501;80502 49001;49002;49003;49004 49004 4 EDEGLADR Unmodified 903.39339 0.39338946 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.952 12.784 2 0.00047119 3546 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 137.18 130.72 10054000000 879260000 981860000 884850000 0 0 0 943900000 889360000 922120000 0 0 0 752470000 626970000 646580000 0 0 0 871480000 827110000 828200000 0 0 0 4285 827 4172 80503;80504;80505;80506;80507;80508;80509;80510;80511;80512;80513;80514 49005;49006;49007;49008;49009;49010;49011;49012;49013;49014;49015;49016 49005 12 EDEHAHEGK Unmodified 1050.4367 0.43665126 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 3.7047 4.5584 2;3 1.5976E-05 599 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 158.56 155.86 161350000 20207000 16630000 14959000 0 94726 0 0 0 0 0 0 0 13789000 9364400 10983000 0 0 0 24873000 27225000 23228000 0 0 0 4286 503 4173 80515;80516;80517;80518;80519;80520;80521;80522;80523;80524;80525;80526;80527;80528;80529;80530;80531;80532;80533 49017;49018;49019;49020;49021;49022;49023;49024;49025;49026;49027;49028;49029;49030;49031 49021 15 EDEIVIDR Unmodified 987.48729 0.48728985 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.094 22.141 2 0.00036838 9275 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.12 127.62 4608500000 283590000 254900000 212010000 0 0 0 420960000 439540000 434560000 0 0 0 417180000 407960000 452130000 0 0 0 446990000 414650000 424000000 0 0 0 4287 192 4174 80534;80535;80536;80537;80538;80539;80540;80541;80542;80543;80544;80545 49032;49033;49034;49035;49036;49037;49038;49039 49033 8 EDEIVIDRK Unmodified 1115.5823 0.58225287 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 14.751 15.575 2 7.9903E-06 4826 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 171.75 147.79 6660900000 0 0 0 0 0 0 0 1067800000 992490000 0 0 0 632490000 508110000 373970000 0 0 0 1049000000 964280000 1072700000 0 0 0 4288 192 4175 80546;80547;80548;80549;80550;80551;80552;80553 49040;49041;49042;49043;49044;49045;49046;49047 49046 8 EDEPMPLTSGEFAVLK Unmodified 1761.8495 0.84950252 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By MS/MS 1 49.16 47.456 2 0.00022619 23523 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.676 78.171 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4289 570 4176 80554 49048 49048 1 EDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHMTK Unmodified 4462.8996 0.89962245 598 P0AAJ1 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG yes yes 0 0 2 By MS/MS 1 36.67 34.72 7 0.16752 16958 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 0.84312 0.76203 27900000 0 0 0 0 0 0 0 27900000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4290 598 4177 80555 49049 49049 1 EDGIYVTMEGK Unmodified 1240.5646 0.56455389 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 3 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 3 28.958 27.578 2 1.853E-05 9853 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 137.95 129.04 6658700000 357440000 351370000 276480000 576810000 514750000 531420000 310400000 309290000 295030000 89695000 58402000 57648000 0 222500000 236530000 14263000 11408000 12945000 350610000 367610000 337670000 466510000 480940000 429010000 4291 542 4178 80556;80557;80558;80559;80560;80561;80562;80563;80564;80565;80566;80567;80568;80569;80570;80571;80572;80573;80574;80575;80576;80577;80578;80579;80580;80581;80582;80583;80584;80585 49050;49051;49052;49053;49054;49055;49056;49057;49058;49059;49060;49061;49062;49063;49064;49065;49066;49067;49068;49069;49070;49071;49072;49073;49074;49075;49076;49077;49078;49079;49080;49081;49082;49083;49084;49085;49086;49087;49088;49089;49090;49091;49092;49093;49094;49095;49096;49097;49098;49099 49066 50 EDGIYVTMEGK Oxidation (M) 1256.5595 0.55946851 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 3 4 4 6 1 1 3 3 2 1 2 2 1 4 4 5 22.303 22.051 2 0.00045155 5630 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 89.047 88.647 214450000 9175600 9185100 12597000 27693000 25904000 27046000 3095300 0 13454000 3651200 2253800 0 1812400 0 0 0 0 0 3706600 7232000 4642000 20101000 19773000 23127000 4292 542 4178 80586;80587;80588;80589;80590;80591;80592;80593;80594;80595;80596;80597;80598;80599;80600;80601;80602;80603;80604;80605;80606;80607;80608;80609;80610;80611;80612;80613;80614;80615;80616;80617;80618;80619;80620;80621;80622;80623;80624;80625;80626;80627;80628;80629;80630;80631;80632;80633;80634;80635 49100;49101;49102;49103;49104;49105;49106;49107;49108;49109;49110;49111;49112;49113;49114;49115;49116;49117;49118;49119;49120;49121;49122 49118 324 21 EDGIYVTMEGKK Unmodified 1368.6595 0.65951691 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 20.397 20.366 2;3 6.6073E-05 6274 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 121.83 120.21 618320000 0 0 0 119310000 114880000 122140000 0 0 0 9262300 9388000 8287500 0 0 0 2132000 2731200 2399100 0 0 0 82940000 72348000 72513000 4293 542 4179 80636;80637;80638;80639;80640;80641;80642;80643;80644;80645;80646;80647;80648;80649;80650;80651;80652;80653;80654;80655;80656 49123;49124;49125;49126;49127;49128;49129;49130;49131;49132;49133;49134;49135;49136 49129 14 EDGLVAR Unmodified 758.39227 0.39226725 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 2 1 1 12.76 13.596 2 0.0059292 4185 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.596 58.378 913800000 80631000 88660000 90341000 0 0 0 85338000 73711000 79558000 0 0 0 79928000 63577000 57405000 0 0 0 76337000 73612000 64700000 0 0 0 4294 715 4180 80657;80658;80659;80660;80661;80662;80663;80664;80665;80666;80667;80668;80669;80670;80671;80672;80673;80674 49137;49138;49139;49140;49141;49142;49143;49144;49145;49146 49143 10 EDGPFVVR Unmodified 917.46068 0.46068117 1331 P29217 yceH UPF0502 protein YceH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.758 23.769 2 0.013338 10366 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.637 64.865 483690000 48470000 53587000 44563000 0 0 0 48440000 44172000 42393000 0 0 0 33721000 32523000 30265000 0 0 0 37620000 35734000 32199000 0 0 0 4295 1331 4181 80675;80676;80677;80678;80679;80680;80681;80682;80683;80684;80685;80686 49147;49148;49149;49150;49151;49152;49153;49154;49155;49156 49153 10 EDGTACR Unmodified 807.31812 0.31811603 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.4686 5.3566 2 0.022706 972 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 74.415 70.562 159480000 0 0 0 0 0 0 6053600 8064100 7847600 0 0 0 19102000 12878000 12839000 0 0 0 32637000 32758000 27307000 0 0 0 4296 1718 4182 80687;80688;80689;80690;80691;80692;80693;80694;80695 49157;49158;49159;49160;49161;49162 49159 5 EDGTIDFDDGSK Unmodified 1297.531 0.53100516 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.961 23.065 2 2.125E-06 10239 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.96 143.96 2396700000 329190000 312710000 305150000 0 0 0 178430000 167050000 180870000 0 0 0 115000000 122870000 121470000 0 0 0 198030000 198280000 167630000 0 0 0 4297 1195 4183 80696;80697;80698;80699;80700;80701;80702;80703;80704;80705;80706;80707 49163;49164;49165;49166;49167;49168;49169;49170;49171;49172;49173;49174;49175 49164 13 EDGTIDFDDGSKTENTR Unmodified 1898.813 0.81299368 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 18.868 19.449 2;3 2.9046E-10 7418 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.6 145.6 350760000 46213000 41728000 38201000 0 0 0 23048000 30831000 27314000 0 0 0 21947000 21307000 18474000 0 0 0 27305000 30476000 23910000 0 0 0 4298 1195 4184 80708;80709;80710;80711;80712;80713;80714;80715;80716;80717;80718;80719;80720;80721;80722;80723;80724;80725;80726;80727;80728;80729;80730 49176;49177;49178;49179;49180;49181;49182;49183;49184;49185;49186;49187;49188;49189 49183 14 EDGTPEPDFQQQVR Unmodified 1644.738 0.73797824 1526 P39332 yjgH RutC family protein YjgH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 24.831 23.824 2 1.6008E-06 10704 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.03 124.02 88181000 13626000 11748000 9637400 0 0 0 9985500 11490000 8827800 0 0 0 4137500 2820500 0 0 0 0 6965000 5095400 3847700 0 0 0 4299 1526 4185 80731;80732;80733;80734;80735;80736;80737;80738;80739;80740;80741 49190;49191 49191 2 EDGVNIWGDGSTYK Unmodified 1539.6842 0.68415175 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.306 33.782 2 7.0015E-20 16444 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 218.55 218.55 417150000 63888000 54592000 53014000 0 808050 1157600 30379000 30749000 33749000 0 0 0 21777000 20250000 23451000 0 0 0 29282000 25886000 28168000 0 0 0 4300 235 4186 80742;80743;80744;80745;80746;80747;80748;80749;80750;80751;80752;80753;80754;80755 49192;49193;49194;49195;49196;49197;49198;49199;49200;49201;49202;49203 49193 12 EDGYETIMVNCNPETVSTDYDTSDR Unmodified 2910.1808 0.18076201 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 41.784 40.228 2;3 4.2588E-60 19638 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 311.23 311.23 314160000 69757000 69598000 56085000 0 0 0 0 0 0 0 0 0 8055600 9367000 4317200 0 0 0 22718000 33181000 41082000 0 0 0 4301 65 4187 80756;80757;80758;80759;80760;80761;80762;80763;80764;80765;80766;80767;80768;80769;80770;80771;80772 49204;49205;49206;49207;49208;49209;49210;49211;49212;49213;49214 49212 11 EDHFHYEGGIK Unmodified 1330.5942 0.59421454 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.978 14.843 2 0.00074605 4436 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 104.17 88.505 53695000 5196100 4249200 3732400 0 0 0 4915000 3264400 4295800 0 0 0 3989800 4782500 3170900 0 0 0 4634900 6089100 5374700 0 0 0 4302 883 4188 80773;80774;80775;80776;80777;80778;80779;80780;80781;80782;80783;80784 49215;49216;49217 49216 0 EDHPLASLLPCDNVFAIESR Unmodified 2282.1001 0.10013134 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.157 49.901 3 4.1967E-10 24401 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 112.91 104.09 230200000 16885000 22087000 16470000 0 0 0 22794000 19319000 19582000 0 0 0 14280000 9600800 16561000 0 0 0 26863000 22996000 22766000 0 0 0 4303 35 4189 80785;80786;80787;80788;80789;80790;80791;80792;80793;80794;80795;80796 49218;49219;49220;49221 49220 4 EDKPTTSKPGAPFITSTLQQAASTR Unmodified 2631.3504 0.35040902 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 1 2 2 2 2 1 2 2 31.118 29.786 3;4 2.261E-30 14199 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 184.76 173.66 1622800000 135130000 94593000 101680000 0 1605800 1386200 101750000 99895000 117190000 0 0 3683400 144060000 147310000 118970000 2398500 0 13184000 172090000 161130000 173700000 6400600 13009000 13646000 4304 124 4190 80797;80798;80799;80800;80801;80802;80803;80804;80805;80806;80807;80808;80809;80810;80811;80812;80813;80814;80815;80816;80817;80818;80819;80820;80821;80822;80823;80824;80825;80826;80827;80828;80829;80830;80831 49222;49223;49224;49225;49226;49227;49228;49229;49230;49231;49232;49233;49234;49235;49236;49237;49238;49239;49240;49241;49242;49243;49244;49245;49246 49228 25 EDLGGTVDANNDITAK Unmodified 1631.7639 0.76385864 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 24.196 23.295 2 1.4184E-18 10195 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 193.73 183.18 89823000 13524000 14452000 12981000 0 431500 0 11827000 10085000 0 0 0 0 5791100 0 7241300 0 0 0 13491000 0 0 0 0 0 4305 1334 4191 80832;80833;80834;80835;80836;80837;80838;80839;80840 49247;49248;49249;49250;49251;49252;49253 49250 7 EDLIPMRPDHGHQMLDDLK Unmodified 2259.0776 0.077621754 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.296 29.939 5 0.12743 13415 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 25.186 20.476 147370000 22706000 17495000 20326000 0 0 0 11089000 9967900 9909200 0 0 0 8017000 11655000 10022000 0 0 0 11157000 8697100 6328600 0 0 0 4306 1244 4192 80841;80842;80843;80844;80845;80846;80847;80848;80849;80850;80851;80852 49254 49254 1 EDLLANR Unmodified 829.42938 0.42938104 1764 P75713 allE (S)-ureidoglycine aminohydrolase yes yes 0 0 0 By MS/MS 1 17.487 18.185 2 0.025688 6612 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 72.355 48.382 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4307 1764 4193 80853 49255 49255 1 EDLLASGR Unmodified 859.43995 0.43994572 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.08 18.7 2 0.00018486 6854 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.73 128.73 7443100000 761740000 803150000 628580000 1394000 0 1071500 590850000 605450000 564120000 0 0 0 611150000 506370000 518400000 0 0 0 611990000 646120000 592720000 0 0 0 4308 271 4194 80854;80855;80856;80857;80858;80859;80860;80861;80862;80863;80864;80865;80866;80867 49256;49257;49258;49259;49260;49261;49262;49263;49264;49265;49266;49267 49264 12 EDLLHGGAHK Unmodified 1075.5411 0.54105675 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 1 2 2 2 1 2 1 11.367 12.146 2;3 0.00041021 3122 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.29 88.201 482840000 157110000 118900000 102360000 0 0 0 0 6315500 8369900 2625200 2412300 0 17910000 13573000 15727000 0 0 0 8486900 18581000 10483000 0 0 0 4309 405 4195 80868;80869;80870;80871;80872;80873;80874;80875;80876;80877;80878;80879;80880;80881;80882;80883;80884;80885;80886;80887 49268;49269;49270;49271;49272;49273;49274;49275 49268 8 EDLNENAPR Unmodified 1056.4836 0.48360145 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.153 12.985 2 1.4538E-05 3494 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 160.54 151.32 1856900000 127990000 115040000 124180000 0 0 0 198150000 169250000 177100000 0 0 0 144980000 124950000 126880000 0 0 0 190700000 183590000 174110000 0 0 0 4310 63 4196 80888;80889;80890;80891;80892;80893;80894;80895;80896;80897;80898;80899 49276;49277;49278;49279;49280;49281;49282;49283;49284;49285;49286 49286 11 EDLVNEIK Unmodified 958.49713 0.49712625 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.75 23.761 2 0.00087625 10767 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.41 86.797 2912200000 245780000 224870000 195440000 0 0 0 414710000 373200000 341480000 0 0 0 192590000 169920000 149780000 0 0 0 225040000 187040000 192330000 0 0 0 4311 320 4197 80900;80901;80902;80903;80904;80905;80906;80907;80908;80909;80910;80911 49287;49288;49289;49290;49291;49292;49293;49294;49295;49296;49297;49298 49288 12 EDNKDAENVKK Unmodified 1288.6259 0.62590859 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 2 2 2 2 2 2 1 1 1 2 2 1 1 1 1 2 2 2 1 1 1 6.1284 6.8397 2;3 8.6837E-10 1386 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 192.12 174.6 210930000 10521000 10967000 10631000 5547000 6459500 7771500 13013000 13542000 15546000 15117000 11932000 10364000 7550100 5753100 3584900 1712300 1640600 1181000 16114000 15003000 17556000 3201900 3099400 3124600 4312 1321 4198 80912;80913;80914;80915;80916;80917;80918;80919;80920;80921;80922;80923;80924;80925;80926;80927;80928;80929;80930;80931;80932;80933;80934;80935;80936;80937;80938;80939;80940;80941;80942;80943;80944;80945;80946 49299;49300;49301;49302;49303;49304;49305;49306;49307;49308;49309;49310;49311;49312 49310 14 EDNSLPVR Unmodified 928.46141 0.46140945 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.43 16.258 2 0.00043484 5594 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.28 123.84 2129400000 106090000 92533000 0 0 0 494700 303800000 308400000 276120000 0 0 0 174000000 159050000 152730000 0 0 0 196290000 173500000 186380000 0 0 0 4313 1437 4199 80947;80948;80949;80950;80951;80952;80953;80954;80955;80956;80957;80958 49313;49314;49315;49316;49317;49318;49319;49320;49321 49314 9 EDPAGNYIHYGVR Unmodified 1489.695 0.69499121 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 24.306 23.409 2;3 5.7219E-24 10100 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 237.44 226.92 1045100000 210310000 194980000 177700000 0 0 0 107830000 112680000 93929000 0 0 0 18041000 22546000 18414000 0 0 0 32916000 28551000 27167000 0 0 0 4314 1423 4200 80959;80960;80961;80962;80963;80964;80965;80966;80967;80968;80969;80970;80971;80972;80973;80974;80975;80976;80977;80978;80979;80980;80981;80982 49322;49323;49324;49325;49326;49327 49327 3 EDPEFYENMR Unmodified 1328.5343 0.53431639 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 28.438 27.186 2 1.1126E-08 12690 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 180.54 180.54 240310000 4628400 3308400 3945800 0 0 0 47951000 45737000 43213000 0 0 0 33886000 31848000 25791000 0 0 0 0 0 0 0 0 0 4315 520 4201 80983;80984;80985;80986;80987;80988;80989;80990;80991 49328;49329;49330 49330 3 EDQGISFTEFSYNLLQGYDFACLNK Unmodified 2958.3382 0.33818935 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.689 54.216 3 5.6195E-05 26749 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.373 81.296 220750000 15291000 13597000 17517000 0 0 0 15956000 10889000 8269200 0 0 0 20179000 23164000 21369000 0 0 0 26761000 23570000 24190000 0 0 0 4316 1024 4202 80992;80993;80994;80995;80996;80997;80998;80999;81000;81001;81002;81003 49331;49332 49331 2 EDSDTDGQVFYK Unmodified 1402.5889 0.58885439 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 1 1 1 1 1 1 1 1 1 1 22.667 22.181 2 0.00091792 9476 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.239 80.239 62177000 8731900 5469200 6247500 0 0 0 0 3701900 3448700 0 0 0 6818000 4538500 4403100 0 0 0 5910600 5405600 7502200 0 0 0 4317 1221 4203 81004;81005;81006;81007;81008;81009;81010;81011;81012;81013;81014;81015 49333;49334 49334 2 EDTGFIGFK Unmodified 1012.4866 0.48656157 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 33.683 32.146 2 0.00078595 15720 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 101.28 93.613 285700000 4229200 3430800 4029300 0 0 0 77000000 75260000 63532000 1723000 0 0 19180000 18993000 1768200 0 0 0 8508200 8047000 0 0 0 0 4318 1276 4204 81016;81017;81018;81019;81020;81021;81022;81023;81024;81025;81026;81027;81028 49335;49336;49337;49338;49339;49340 49336 3 EDTIPFLEALK Unmodified 1274.6758 0.6758189 1701 P64636 yrfG GMP/IMP nucleotidase YrfG yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.058 51.657 2 0.0010906 24356 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 82.645 72.011 101110000 0 0 0 0 0 0 10742000 0 0 0 0 0 14808000 14482000 15050000 0 0 0 15818000 16923000 13291000 0 0 0 4319 1701 4205 81029;81030;81031;81032;81033;81034;81035 49341 49341 1 EDTPAIR Unmodified 800.40283 0.40283194 986 P0AG51 rpmD 50S ribosomal protein L30 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.855 13.576 2 0.0015703 3989 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 127.66 99.129 4694700000 725140000 678860000 675380000 0 2382900 2475100 0 0 266670000 1823500 0 0 388820000 0 332140000 0 917220 0 586100000 556810000 475890000 0 0 1272900 4320 986 4206 81036;81037;81038;81039;81040;81041;81042;81043;81044;81045;81046;81047;81048;81049 49342;49343;49344;49345;49346;49347;49348;49349 49348 8 EDVLGEALK Unmodified 972.51278 0.51277632 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 30.067 28.7 2 0.00019484 13307 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.02 81.94 501180000 87709000 80942000 77866000 0 0 807980 36564000 40382000 40129000 0 0 0 21487000 19307000 20688000 0 0 0 24558000 26174000 24568000 0 0 0 4321 748 4207 81050;81051;81052;81053;81054;81055;81056;81057;81058;81059;81060;81061;81062 49350;49351;49352;49353;49354;49355;49356;49357;49358;49359;49360;49361 49357 12 EDVQAYVK Unmodified 950.47091 0.4709115 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 1 2 1 1 1 1 1 2 1 2 1 2 17.629 18.084 2 0.0012277 6698 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 110.61 89.458 13749000000 428360000 423790000 390590000 1328500000 1027500000 1080100000 783440000 732280000 791490000 127170000 110670000 109780000 394790000 433320000 374480000 35806000 24163000 30596000 659940000 730480000 667140000 1101800000 975170000 988080000 4322 133 4208 81063;81064;81065;81066;81067;81068;81069;81070;81071;81072;81073;81074;81075;81076;81077;81078;81079;81080;81081;81082;81083;81084;81085;81086;81087;81088;81089;81090;81091;81092;81093 49362;49363;49364;49365;49366;49367;49368;49369;49370;49371;49372;49373;49374;49375;49376;49377;49378;49379;49380;49381;49382;49383;49384;49385;49386;49387 49368 26 EDVWEPDLDVNWGDEK Unmodified 1944.8378 0.83775186 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.161 49.909 2;3 3.1343E-18 24476 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.41 182.41 1788500000 202980000 169500000 178300000 0 0 0 174340000 181530000 188700000 0 0 0 121790000 113390000 101590000 0 0 0 117570000 117920000 120880000 0 0 0 4323 1086 4209 81094;81095;81096;81097;81098;81099;81100;81101;81102;81103;81104;81105;81106;81107;81108;81109;81110;81111;81112;81113;81114;81115;81116;81117 49388;49389;49390;49391;49392;49393;49394;49395;49396;49397;49398;49399;49400;49401 49390 14 EDYETNWEGR Unmodified 1297.5211 0.52110917 1772 P75791 ybiU Uncharacterized protein YbiU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.144 22.436 2 0.00052464 9648 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 97.431 93.859 58670000 6761200 5084900 5261800 0 0 0 4522800 5328800 3630800 0 0 0 3989600 3016700 2863900 0 0 0 6704000 5876600 5628400 0 0 0 4324 1772 4210 81118;81119;81120;81121;81122;81123;81124;81125;81126;81127;81128;81129 49402;49403;49404 49403 2 EDYEVTGGTVEFK Unmodified 1472.6671 0.66710471 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.273 29.917 2 6.7592E-09 14262 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.97 166.85 294700000 33807000 26931000 21651000 0 0 0 37484000 32039000 35036000 0 0 0 11506000 18331000 14031000 0 0 0 20315000 21981000 21586000 0 0 0 4325 1910 4211 81130;81131;81132;81133;81134;81135;81136;81137;81138;81139;81140;81141 49405;49406;49407;49408;49409;49410;49411;49412;49413;49414;49415;49416 49406 12 EDYLTFAGQLPGNLDIR Unmodified 1920.9581 0.95814177 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 53.574 52.142 2;3 7.1523E-14 25390 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 204.48 192.9 359910000 27712000 30250000 28741000 0 0 0 22728000 22611000 15055000 0 0 0 25267000 24006000 26982000 0 0 0 46801000 41468000 48287000 0 0 0 4326 1218 4212 81142;81143;81144;81145;81146;81147;81148;81149;81150;81151;81152;81153;81154;81155;81156;81157;81158;81159;81160;81161;81162;81163;81164 49417;49418;49419;49420;49421 49419 4 EDYTPYTFTK Unmodified 1263.5659 0.5659341 266 P0A6N8 yeiP Elongation factor P-like protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.316 28.96 2 0.0031153 13031 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 74.941 73.68 281490000 21093000 18136000 19566000 0 0 0 22659000 26807000 20455000 0 0 0 25233000 22018000 20439000 0 0 0 28908000 28817000 27359000 0 0 0 4327 266 4213 81165;81166;81167;81168;81169;81170;81171;81172;81173;81174;81175;81176 49422;49423 49423 2 EDYWWYR Unmodified 1116.4665 0.46649483 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.203 39.538 2 0.0007494 19130 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.87 141.94 485250000 42182000 44404000 40666000 0 0 0 39635000 41087000 43163000 0 0 0 30951000 30430000 31890000 0 0 0 50036000 45671000 45133000 0 0 0 4328 444 4214 81177;81178;81179;81180;81181;81182;81183;81184;81185;81186;81187;81188 49424;49425;49426;49427;49428;49429;49430;49431;49432;49433;49434;49435 49429 8 EEAELAVASTR Unmodified 1174.583 0.58298115 1208 P23522 garL 5-keto-4-deoxy-D-glucarate aldolase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 19.148 19.792 2 1.5031E-07 7496 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.66 125.8 105990000 0 0 0 0 0 0 0 26988000 0 0 0 0 26061000 28284000 24660000 0 0 0 0 0 0 0 0 0 4329 1208 4215 81189;81190;81191;81192;81193;81194 49436;49437;49438 49437 3 EEAESFMTK Unmodified 1070.459 0.45902619 1391 P32162 yiiS UPF0381 protein YiiS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.932 19.29 2 0.00017574 7460 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.69 124 996020000 73227000 77288000 66701000 2733300 2964700 2993000 162030000 164850000 138980000 29762000 22216000 25404000 40630000 35660000 35611000 915820 0 0 37273000 33736000 37768000 1844000 1427200 2008800 4330 1391 4216 81195;81196;81197;81198;81199;81200;81201;81202;81203;81204;81205;81206;81207;81208;81209;81210;81211;81212;81213;81214;81215;81216 49439;49440;49441;49442;49443;49444;49445;49446;49447;49448;49449;49450;49451;49452;49453 49443 15 EEAHGAPLGEEEVALAR Unmodified 1776.8642 0.86424139 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 1 1 1 2 2 2 25.889 24.822 2;3 7.1669E-40 11160 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 198.16 193.61 1236700000 248910000 234000000 213380000 0 0 0 138170000 129490000 135130000 0 0 0 29756000 3761200 3896100 0 992110 0 35740000 34381000 29105000 0 0 0 4331 1423 4217 81217;81218;81219;81220;81221;81222;81223;81224;81225;81226;81227;81228;81229;81230;81231;81232;81233;81234;81235;81236;81237;81238;81239 49454;49455;49456;49457;49458;49459;49460;49461;49462;49463 49458 10 EEALNLENK Unmodified 1058.5244 0.52440364 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 17.761 18.475 2 0.00056646 6733 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 106.94 93.563 130000000 38760000 43478000 36026000 0 0 0 0 0 0 0 0 0 0 2649900 0 0 0 0 3847100 5236300 0 0 0 0 4332 1173 4218 81240;81241;81242;81243;81244;81245 49464;49465;49466;49467 49466 3 EEAVVWDILDEVIR Unmodified 1684.8672 0.8672015 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 3 3 4 2 2 2 2 2 3 55.804 54.67 2;3 4.0746E-22 22023 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 267.39 261.15 10648000000 26373000 23107000 21294000 0 0 0 13133000 10434000 12361000 181130000 172260000 158090000 29046000 31497000 26408000 2835700000 1696300000 4590300000 32813000 34240000 30189000 237400000 229520000 255860000 4333 458 4219 81246;81247;81248;81249;81250;81251;81252;81253;81254;81255;81256;81257;81258;81259;81260;81261;81262;81263;81264;81265;81266;81267;81268;81269;81270;81271;81272;81273;81274;81275;81276;81277;81278;81279;81280;81281;81282;81283;81284;81285;81286;81287;81288;81289;81290;81291;81292 49468;49469;49470;49471;49472;49473;49474;49475;49476;49477;49478;49479;49480;49481;49482;49483;49484;49485;49486 49468 19 EEAVVWDILDEVIREHPVLLNR Unmodified 2643.4021 0.40205066 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 55.292 54.324 4 6.4214E-35 21629 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 209.45 206.97 1237700000 0 0 0 0 0 0 0 0 0 50748000 48082000 39948000 0 0 0 177480000 320110000 366490000 0 0 0 84102000 81346000 69407000 4334 458 4220 81293;81294;81295;81296;81297;81298;81299;81300;81301 49487;49488;49489;49490;49491 49487 5 EECAEGVEDIMHTLAAK Unmodified 1901.8499 0.84991323 701 P0AC51 zur Zinc uptake regulation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.949 41.403 3 9.8618E-05 20134 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 72.11 72.11 106840000 13713000 11801000 15188000 0 0 0 5439600 9474700 6978200 0 0 0 6368400 5559900 5214600 0 0 0 11537000 8989700 6574000 0 0 0 4335 701 4221 81302;81303;81304;81305;81306;81307;81308;81309;81310;81311;81312;81313 49492;49493;49494 49493 3 EEDDVVVIK Unmodified 1044.5339 0.53390569 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.648 22.913 2 0.012273 9965 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 65.252 49.098 680050000 49441000 44490000 40254000 0 0 0 51518000 47442000 47896000 0 0 0 63905000 71166000 64814000 0 0 0 64007000 61890000 70498000 0 0 2728700 4336 288 4222 81314;81315;81316;81317;81318;81319;81320;81321;81322;81323;81324;81325;81326 49495;49496;49497;49498 49496 1 EEDFVAER Unmodified 993.44034 0.44033966 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.587 18.269 2 0.00029856 6746 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 147.16 75.441 173450000 14155000 11085000 12659000 0 0 0 15838000 15548000 14456000 0 0 0 15578000 11900000 14063000 0 0 0 17174000 15846000 15147000 0 0 0 4337 289 4223 81327;81328;81329;81330;81331;81332;81333;81334;81335;81336;81337;81338 49499;49500;49501;49502;49503;49504;49505;49506 49501 8 EEDGIVLIDQDK Unmodified 1372.6722 0.67219008 1067;1156 P11349;P19318 narH;narY Respiratory nitrate reductase 1 beta chain;Respiratory nitrate reductase 2 beta chain no no 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 34.157 32.096 2 2.9701E-06 12183 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 169.76 168.17 194130000 0 0 0 0 0 0 37222000 32564000 29966000 7172400 9684600 8547900 0 0 0 0 0 0 0 0 0 22806000 23142000 23020000 4338 1067;1156 4224 81339;81340;81341;81342;81343;81344;81345;81346;81347 49507;49508;49509 49508 3 EEDLVER Unmodified 888.41888 0.41887593 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 13.907 14.806 2 0.16252 4699 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 54.571 39.029 161990000 0 74466000 72668000 0 0 0 0 0 0 0 0 0 0 14861000 0 0 0 0 0 0 0 0 0 0 4339 1316 4225 81348;81349;81350 49510;49511 49510 1 EEEEQQQR Unmodified 1074.4578 0.45778063 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 8.4724 8.8163 2 8.2926E-05 1411 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.53 132.59 78587000 27457000 22916000 19816000 0 0 0 0 0 0 0 0 0 0 0 0 2255900 3140000 3001900 0 0 0 0 0 0 4340 729 4226 81351;81352;81353;81354;81355;81356 49512;49513;49514;49515;49516;49517 49515 6 EEEGALVISNLPER Unmodified 1554.789 0.78895118 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 36.833 35.237 2;3 8.6645E-35 17405 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 249.23 237.17 1129000000 140980000 118630000 107380000 0 0 0 85742000 82337000 82879000 0 0 0 78268000 72868000 83532000 0 0 0 95011000 90885000 90521000 0 0 0 4341 94 4227 81357;81358;81359;81360;81361;81362;81363;81364;81365;81366;81367;81368;81369;81370;81371;81372;81373;81374;81375;81376;81377 49518;49519;49520;49521;49522;49523;49524;49525;49526;49527;49528;49529;49530;49531;49532;49533;49534;49535;49536;49537 49518 16 EEEINNR Unmodified 902.40937 0.40937388 693 P0AC19 folX D-erythro-7,8-dihydroneopterin triphosphate epimerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 10.236 11.006 2 0.0023108 2449 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.54 105.02 103780000 15518000 18231000 14838000 0 0 0 15528000 21011000 16575000 0 0 0 0 533960 0 0 0 0 1542900 0 0 0 0 0 4342 693 4228 81378;81379;81380;81381;81382;81383;81384;81385 49538;49539;49540;49541 49538 3 EEESAAAAEVEER Unmodified 1418.6161 0.61613177 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 16.017 16.631 2;3 1.9966E-12 5685 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 229.53 219.07 1129200000 120310000 121860000 100640000 0 4885100 6107600 65497000 68517000 59203000 0 0 0 78829000 80196000 64069000 21835000 20916000 17069000 99506000 93376000 92499000 4105600 4504700 5265500 4343 728 4229 81386;81387;81388;81389;81390;81391;81392;81393;81394;81395;81396;81397;81398;81399;81400;81401;81402;81403;81404;81405;81406;81407;81408;81409;81410;81411;81412;81413;81414;81415;81416;81417;81418;81419;81420;81421;81422 49542;49543;49544;49545;49546;49547;49548;49549;49550;49551;49552;49553;49554;49555;49556;49557;49558;49559;49560;49561;49562;49563 49556 22 EEFDVQTQVLLR Unmodified 1475.762 0.76200815 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 0 By MS/MS By MS/MS 1 1 42.985 41.031 2 1.4981E-06 15952 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 107.21 99.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4344 1962 4230 81423;81424 49564;49565 49564 2 EEFEAGIK Unmodified 921.44436 0.4443624 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.011 19.456 2 0.013351 7574 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 73.616 67.162 207020000 13881000 10557000 7741200 1830400 0 0 0 23696000 0 2235500 0 2005300 17997000 16597000 15763000 0 0 0 34661000 30301000 28360000 1399500 0 0 4345 1383 4231 81425;81426;81427;81428;81429;81430;81431;81432;81433;81434;81435;81436;81437;81438;81439;81440 49566;49567;49568 49567 3 EEFEEICAR Unmodified 1181.5023 0.50228798 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.956 23.077 2 1.6758E-05 9746 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.58 147.99 748740000 169600000 160100000 164800000 0 0 0 0 0 3225500 1765000 2029800 1959700 20432000 17944000 17318000 0 0 0 59072000 64312000 65173000 1000800 0 0 4346 65 4232 81441;81442;81443;81444;81445;81446;81447;81448;81449;81450;81451;81452;81453;81454 49569;49570;49571;49572;49573;49574;49575;49576;49577 49574 9 EEFGGELIDGGPWLK Unmodified 1645.7988 0.79878758 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 4 3 1 1 1 3 3 3 1 4 2 3 3 4 4 1 1 51.176 49.885 2;3 4.1394E-20 23606 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 209.97 203.73 17598000000 2644300000 2386500000 2228000000 8581600 9200300 8978500 893820000 942880000 869190000 0 0 3622200 1126200000 60146000 1095100000 0 0 0 1856600000 1736000000 1720800000 4128400 0 3587300 4347 179 4233 81455;81456;81457;81458;81459;81460;81461;81462;81463;81464;81465;81466;81467;81468;81469;81470;81471;81472;81473;81474;81475;81476;81477;81478;81479;81480;81481;81482;81483;81484;81485;81486;81487;81488;81489;81490;81491;81492;81493;81494;81495;81496;81497;81498;81499 49578;49579;49580;49581;49582;49583;49584;49585;49586;49587;49588;49589;49590;49591;49592;49593;49594;49595;49596;49597;49598;49599;49600;49601;49602;49603;49604;49605;49606;49607;49608;49609 49604 32 EEFLADNPGIDAEDANVQQFNAQK Unmodified 2662.2147 0.2147034 1269 P25738 msyB Acidic protein MsyB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 42.615 40.705 2;3 3.7963E-60 19852 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 249.14 243.35 2850900000 581580000 543680000 532700000 0 0 0 214100000 228020000 243010000 13412000 12516000 12434000 63058000 57711000 57258000 0 0 0 92507000 70324000 85304000 13765000 15529000 14050000 4348 1269 4234 81500;81501;81502;81503;81504;81505;81506;81507;81508;81509;81510;81511;81512;81513;81514;81515;81516;81517;81518;81519;81520;81521;81522;81523;81524;81525;81526;81527;81528;81529;81530;81531;81532;81533;81534;81535 49610;49611;49612;49613;49614;49615;49616;49617;49618;49619;49620;49621;49622;49623;49624;49625;49626;49627;49628;49629;49630;49631;49632;49633;49634;49635;49636;49637;49638 49632 29 EEGFIEDFK Unmodified 1112.5026 0.50260556 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.083 33.627 2 0.0018718 15428 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 100.02 95.029 660720000 99834000 83123000 81665000 0 0 0 30724000 32419000 34040000 0 0 0 42421000 39158000 40315000 0 0 0 57590000 60536000 58900000 0 0 0 4349 377 4235 81536;81537;81538;81539;81540;81541;81542;81543;81544;81545;81546;81547 49639;49640;49641;49642;49643;49644;49645;49646;49647 49646 9 EEGFIEDFKVEGDTKPELELTLK Unmodified 2665.3374 0.3374443 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 1 45.768 44.187 3;4 4.2523E-15 22016 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 144.4 141.89 1823700000 256110000 280820000 196500000 2052100 0 5756900 89443000 92166000 80698000 13359000 6176100 9632800 122540000 104180000 115160000 0 0 0 163320000 138740000 144000000 0 3077200 0 4350 377 4236 81548;81549;81550;81551;81552;81553;81554;81555;81556;81557;81558;81559;81560;81561;81562;81563;81564;81565;81566;81567;81568;81569;81570;81571;81572;81573;81574;81575;81576;81577;81578 49648;49649;49650;49651;49652;49653;49654;49655;49656;49657;49658;49659;49660;49661;49662;49663;49664;49665;49666;49667;49668;49669;49670;49671;49672;49673;49674;49675;49676;49677;49678 49649 31 EEGMTIHVR Unmodified 1070.5179 0.51787847 1857 P76407 yegS Lipid kinase YegS yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.303 16 3 0.071035 5433 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 31.422 23.497 122790000 16344000 12436000 13816000 452490 474110 489960 13753000 13689000 13224000 2217100 2081200 1661200 3527100 3414300 4410500 0 0 0 9082700 5301200 6411300 0 0 0 4351 1857 4237 81579;81580;81581;81582;81583;81584;81585;81586;81587;81588;81589;81590;81591;81592;81593;81594;81595;81596 49679;49680 49680 2 EEGTRLDLDR Unmodified 1202.5891 0.58912916 369 P0A7T3 rpsP 30S ribosomal protein S16 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.429 15.763 3 0.11195 4224 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 26.707 12.449 21483000 0 0 0 777690 0 1028100 0 0 0 2422000 0 0 0 0 0 2917100 2728900 1589400 0 0 5517400 2724200 1777900 0 4352 369 4238 81597;81598;81599;81600;81601;81602;81603;81604;81605 49681 49681 1 EEGVEFK Unmodified 836.3916 0.39159855 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 15.381 16.235 1 0.020498 5571 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.43 72.324 55725000 19405000 14074000 14059000 0 0 0 0 0 0 0 0 0 3238400 2709200 2238700 0 0 0 0 0 0 0 0 0 4353 219 4239 81606;81607;81608;81609;81610;81611 49682;49683 49683 0 EEGYSFDFAYTSVLK Unmodified 1754.8039 0.80393254 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 3 2 2 3 3 3 3 1 2 52.361 51.055 2 1.4119E-08 23611 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 144.1 144.1 1209200000 168230000 160370000 95161000 0 0 0 114310000 90102000 104570000 0 0 0 73562000 61254000 62728000 0 0 0 106170000 87675000 85058000 0 0 0 4354 1652 4240 81612;81613;81614;81615;81616;81617;81618;81619;81620;81621;81622;81623;81624;81625;81626;81627;81628;81629;81630;81631;81632;81633;81634;81635;81636;81637;81638;81639;81640 49684;49685;49686;49687;49688;49689;49690;49691;49692;49693;49694;49695;49696;49697;49698;49699;49700;49701;49702;49703;49704;49705;49706;49707;49708;49709;49710;49711;49712;49713;49714;49715;49716 49711 31 EEHLWSVAR Unmodified 1125.5567 0.55670682 206 P09155 rnd Ribonuclease D yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 2 2 1 2 2 1 21.019 21.36 2;3 0.00041051 8633 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.308 72.641 120970000 8785200 12155000 6104900 0 0 0 8055700 5568900 11339000 0 0 0 10812000 8884800 6848400 0 0 0 16168000 16288000 9958200 0 0 0 4355 206 4241 81641;81642;81643;81644;81645;81646;81647;81648;81649;81650;81651;81652;81653;81654;81655;81656;81657;81658;81659 49717;49718;49719;49720;49721;49722;49723;49724 49718 7 EEIAEQHR Unmodified 1010.4781 0.47812215 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 8.9822 9.8163 2 3.5796E-05 2321 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 173.88 169.52 593780000 47656000 45085000 34695000 0 0 0 31989000 21182000 20649000 0 0 0 78429000 74450000 20686000 0 0 0 82925000 65061000 70976000 0 0 0 4356 212 4242 81660;81661;81662;81663;81664;81665;81666;81667;81668;81669;81670;81671;81672 49725;49726;49727;49728;49729;49730;49731;49732;49733;49734;49735;49736 49735 12 EEIDAFLDR Unmodified 1106.5244 0.52440364 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.115 35.401 2 0.0005527 16417 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 107.29 107.29 373230000 20605000 17702000 15548000 10552000 9652400 9361100 19841000 21949000 25768000 0 0 0 32663000 29304000 40325000 0 0 0 33293000 39340000 39607000 0 3769000 3949300 4357 528 4243 81673;81674;81675;81676;81677;81678;81679;81680;81681;81682;81683;81684;81685;81686;81687;81688;81689 49737;49738;49739;49740;49741;49742 49742 6 EEIEGSGILSK Unmodified 1160.5925 0.5924832 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 3 1 1 2 1 1 1 24.601 23.805 2 0.00010599 8058 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 118.71 85.161 6356400000 267060000 265580000 246000000 1500900 1677100 1602000 192160000 177730000 162850000 316960000 1442700 298040000 238320000 237640000 240830000 522510000 533300000 552400000 260480000 262570000 254010000 453480000 465190000 403110000 4358 463 4244 81690;81691;81692;81693;81694;81695;81696;81697;81698;81699;81700;81701;81702;81703;81704;81705;81706;81707;81708;81709;81710;81711;81712;81713;81714;81715;81716;81717;81718;81719 49743;49744;49745;49746;49747;49748;49749;49750;49751;49752;49753;49754;49755;49756;49757;49758;49759;49760;49761;49762;49763;49764;49765;49766 49756 24 EEIEGSGILSKDDIIDVMK Oxidation (M) 2106.0402 0.04021642 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 1 37.495 36.532 3 2.9314E-06 12503 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 89.049 88.395 49263000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13087000 11070000 10751000 0 0 0 3017200 5419100 5919100 4359 463 4245 81720;81721;81722;81723;81724;81725;81726 49767;49768;49769;49770 49768 254 4 EEIEGSGILSKDDIIDVMK Unmodified 2090.0453 0.045301798 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 1 1 2 2 2 1 1 2 2 2 44.979 43.578 2;3 2.0116E-36 15603 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 266.42 253.65 6761000000 15105000 12121000 0 1705600 1970500 1472700 0 11285000 11530000 407610000 391270000 340770000 8639400 0 8983500 1335900000 1514800000 1449100000 0 11278000 11844000 451650000 394590000 379440000 4360 463 4245 81727;81728;81729;81730;81731;81732;81733;81734;81735;81736;81737;81738;81739;81740;81741;81742;81743;81744;81745;81746;81747;81748;81749;81750;81751;81752;81753;81754;81755 49771;49772;49773;49774;49775;49776;49777;49778;49779;49780;49781;49782;49783;49784;49785;49786;49787;49788;49789 49775 19 EEIEGSGILSKDDIIDVMKK Oxidation (M) 2234.1352 0.13517944 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 2 By MS/MS By matching By MS/MS By matching 1 1 1 1 31.414 30.943 3 1.61E-05 10828 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 86.727 83.674 19775000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7609300 4769800 3987200 0 0 0 3408400 0 0 4361 463 4246 81756;81757;81758;81759 49790;49791 49790 254 2 EEIEGSGILSKDDIIDVMKK Unmodified 2218.1403 0.14026482 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 4 3 3 3 3 3 3 3 3 39.217 37.653 2;3;4 4.252E-45 13794 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 305.4 291.37 7295800000 0 0 0 2149500 1723500 1303200 0 0 0 431200000 388980000 339680000 0 0 0 1953000000 1387200000 1405000000 0 0 0 436380000 489480000 459790000 4362 463 4246 81760;81761;81762;81763;81764;81765;81766;81767;81768;81769;81770;81771;81772;81773;81774;81775;81776;81777;81778;81779;81780;81781;81782;81783;81784;81785;81786;81787;81788;81789;81790;81791 49792;49793;49794;49795;49796;49797;49798;49799;49800;49801;49802;49803;49804;49805;49806;49807;49808;49809;49810;49811;49812;49813;49814;49815 49794 24 EEIFGPVLVVTR Unmodified 1357.7606 0.76055158 1225 P23883 puuC Aldehyde dehydrogenase PuuC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 48.298 47.059 2 4.9965E-05 22915 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.83 105.33 57798000 21980000 17656000 18162000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4363 1225 4247 81792;81793;81794 49816;49817;49818 49817 3 EEIHGFR Unmodified 886.42972 0.42971539 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.781 13.6 2 0.001213 3984 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.99 108.37 649840000 47776000 46824000 40304000 0 0 0 86318000 83412000 78967000 0 0 0 71660000 0 61303000 0 0 0 0 71091000 62186000 0 0 0 4364 1868 4248 81795;81796;81797;81798;81799;81800;81801;81802;81803;81804 49819;49820;49821;49822;49823;49824;49825 49821 7 EEIKEVR Unmodified 901.4869 0.48689592 264 P0A6M8 fusA Elongation factor G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.892 11.503 2 0.00075829 2614 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 154.11 101.43 776780000 73918000 73680000 69572000 6108000 4986000 6661700 50240000 48138000 42535000 0 7082100 6050900 42184000 48235000 43778000 2017600 1601200 1901100 76706000 78490000 79770000 3962100 4470200 4691700 4365 264 4249 81805;81806;81807;81808;81809;81810;81811;81812;81813;81814;81815;81816;81817;81818;81819;81820;81821;81822;81823;81824;81825;81826;81827 49826;49827;49828;49829;49830;49831;49832;49833;49834;49835;49836;49837;49838;49839 49839 14 EEILNAVSLAWVDGQSLR Unmodified 1999.0375 0.037454724 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 54.644 53.238 2 1.5787E-45 26260 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 266.97 254.47 263080000 99990000 90416000 72671000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4366 1888 4250 81828;81829;81830 49840 49840 1 EEITAVLAAFKPQDQVVLR Unmodified 2126.1736 0.17355427 977 P0AG14 sohB Probable protease SohB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.831 49.462 3 8.7625E-07 24352 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 96.143 94.783 366510000 15759000 12879000 11288000 0 1090200 0 34573000 39953000 40821000 5410300 6090300 6834200 31106000 26621000 28432000 0 0 0 30264000 36622000 31901000 2729700 1940600 2192200 4367 977 4251 81831;81832;81833;81834;81835;81836;81837;81838;81839;81840;81841;81842;81843;81844;81845;81846;81847;81848;81849 49841;49842;49843;49844;49845;49846;49847;49848;49849 49845 9 EEITDGLENAPQTFIGLLK Unmodified 2087.0787 0.078650837 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.851 53.378 2 3.5628E-10 26451 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 175.21 161.18 242470000 40970000 42609000 41825000 0 0 0 19548000 25363000 17216000 0 0 6176000 11926000 9120200 0 0 0 0 0 9740100 7966800 10013000 0 0 4368 1817 4252 81850;81851;81852;81853;81854;81855;81856;81857;81858;81859;81860;81861 49850 49850 1 EEIYFAWR Unmodified 1112.5291 0.52909508 1674 P64476 ydiH Uncharacterized protein YdiH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 42.813 41.064 2 0.00022321 20532 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.51 147.15 108220000 0 0 16462000 0 0 0 23276000 23416000 22860000 0 0 0 0 5579800 4360800 0 0 0 6544000 0 5725900 0 0 0 4369 1674 4253 81862;81863;81864;81865;81866;81867;81868;81869;81870 49851;49852;49853;49854;49855 49851 5 EEKDGETVISWEK Unmodified 1548.7308 0.7307676 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 23.442 22.67 2;3 3.0384E-40 9769 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 287.76 280.38 1000200000 99359000 100210000 90813000 1285700 1140200 1413500 82467000 69384000 66084000 2140700 0 1982500 71898000 63310000 67797000 0 0 0 83076000 101690000 95084000 0 0 1109400 4370 295 4254 81871;81872;81873;81874;81875;81876;81877;81878;81879;81880;81881;81882;81883;81884;81885;81886;81887;81888;81889;81890;81891;81892;81893;81894;81895;81896;81897;81898;81899;81900 49856;49857;49858;49859;49860;49861;49862;49863;49864;49865;49866;49867;49868;49869;49870;49871;49872;49873 49864 18 EEKPEFDPILLR Unmodified 1484.7875 0.78749461 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.367 35.766 3 0.013217 13980 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 51.998 50.419 214620000 9044800 8085200 11035000 0 0 0 4483000 4806700 7407600 8189600 8564600 8702200 7219900 5663800 5707800 29161000 17898000 22296000 8592300 8252500 5613800 11295000 11321000 11284000 4371 383 4255 81901;81902;81903;81904;81905;81906;81907;81908;81909;81910;81911;81912;81913;81914;81915;81916;81917;81918;81919;81920;81921 49874;49875;49876;49877;49878;49879 49877 5 EEKPEFDPILLRPVDDLELTVR Unmodified 2622.3905 0.39048292 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 10 8 9 3 3 4 10 10 11 3 3 4 12 8 9 50.922 49.889 2;3;4;5 3.2312E-62 19674 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 293.42 281.37 114470000000 1743700000 1384700000 1610500000 76500000 85733000 72548000 1069800000 966390000 990490000 7256300000 6985200000 6459300000 1409000000 1549100000 1580200000 14565000000 17131000000 19364000000 1875500000 1695300000 1816200000 9018600000 8088900000 7678000000 4372 383 4256 81922;81923;81924;81925;81926;81927;81928;81929;81930;81931;81932;81933;81934;81935;81936;81937;81938;81939;81940;81941;81942;81943;81944;81945;81946;81947;81948;81949;81950;81951;81952;81953;81954;81955;81956;81957;81958;81959;81960;81961;81962;81963;81964;81965;81966;81967;81968;81969;81970;81971;81972;81973;81974;81975;81976;81977;81978;81979;81980;81981;81982;81983;81984;81985;81986;81987;81988;81989;81990;81991;81992;81993;81994;81995;81996;81997;81998;81999;82000;82001;82002;82003;82004;82005;82006;82007;82008;82009;82010;82011;82012;82013;82014;82015;82016;82017;82018;82019;82020;82021;82022;82023;82024;82025;82026;82027;82028;82029;82030;82031;82032;82033;82034;82035;82036;82037;82038;82039;82040;82041;82042;82043;82044;82045;82046;82047;82048;82049;82050;82051;82052 49880;49881;49882;49883;49884;49885;49886;49887;49888;49889;49890;49891;49892;49893;49894;49895;49896;49897;49898;49899;49900;49901;49902;49903;49904;49905;49906;49907;49908;49909;49910;49911;49912;49913;49914;49915;49916;49917;49918;49919;49920;49921;49922;49923;49924;49925;49926;49927;49928;49929;49930;49931;49932;49933;49934;49935;49936;49937;49938;49939;49940;49941;49942;49943;49944;49945;49946;49947;49948;49949;49950;49951;49952;49953;49954;49955;49956;49957;49958;49959;49960;49961;49962;49963;49964;49965;49966;49967;49968;49969;49970;49971;49972;49973;49974;49975;49976;49977;49978;49979;49980;49981;49982;49983;49984;49985;49986;49987;49988;49989;49990;49991;49992;49993;49994;49995;49996;49997;49998;49999 49957 119 EELAIPPQIK Unmodified 1136.6441 0.64412484 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.322 31.747 2 0.00064039 14762 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.31 106.72 111180000 20924000 16857000 14981000 1052500 674770 612940 14462000 14194000 12355000 0 575540 0 0 2526200 0 0 0 0 3907400 3967600 4093000 0 0 0 4373 147 4257 82053;82054;82055;82056;82057;82058;82059;82060;82061;82062;82063;82064;82065;82066 50000;50001;50002;50003;50004;50005;50006;50007;50008;50009;50010;50011;50012;50013;50014;50015;50016;50017;50018 50010 18 EELCTQCNHCVAACPHSAIR Unmodified 2412.0191 0.019137372 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 14.464 15.23 3;4 2.3801E-23 5010 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.14 152.01 391420000 35750000 29964000 29361000 0 0 0 36897000 41947000 38933000 0 0 0 34020000 28140000 24106000 0 0 0 32227000 27661000 32412000 0 0 0 4374 1609 4258 82067;82068;82069;82070;82071;82072;82073;82074;82075;82076;82077;82078;82079;82080;82081;82082;82083;82084;82085;82086;82087;82088;82089;82090 50019;50020;50021;50022;50023;50024;50025;50026;50027;50028;50029;50030;50031;50032 50021 14 EELDEFPASEK Unmodified 1292.5772 0.57722707 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 25.539 24.428 2 0.0001186 11110 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.3 116.3 278440000 0 0 2497800 0 0 0 63368000 67172000 53586000 0 0 0 21963000 22750000 19490000 0 0 0 9426500 9742800 8441600 0 0 0 4375 1861 4259 82091;82092;82093;82094;82095;82096;82097;82098;82099;82100 50033 50033 1 EELDEIEQAKDEAR Unmodified 1673.7744 0.77442332 261 P0A6L9 hscB Co-chaperone protein HscB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 22.063 22.135 3 0.00023819 9101 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.022 63.972 98456000 10471000 8138600 0 0 0 0 0 7820000 10064000 0 0 0 8219400 9382000 7172400 0 0 0 12651000 14097000 10440000 0 0 0 4376 261 4260 82101;82102;82103;82104;82105;82106;82107;82108;82109;82110 50034;50035 50035 2 EELDFLK Unmodified 892.4542 0.45419881 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 35.355 33.945 2 0.10664 15619 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 52.683 42.257 38691000 0 4433900 2807800 0 0 0 0 0 0 0 0 0 6982200 6642300 5676700 0 0 0 6088400 0 6059400 0 0 0 4377 288 4261 82111;82112;82113;82114;82115;82116;82117 50036 50036 1 EELELVR Unmodified 886.476 0.47599688 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.887 23.775 2 0.00084363 10315 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143.37 120.75 1620500000 135790000 101350000 102500000 478860 397130 0 132470000 118610000 116690000 3606600 2726900 2094900 143310000 124510000 129600000 0 0 0 164680000 165790000 170550000 1712800 1848600 1776900 4378 882 4262 82118;82119;82120;82121;82122;82123;82124;82125;82126;82127;82128;82129;82130;82131;82132;82133;82134;82135;82136;82137 50037;50038;50039;50040;50041;50042;50043;50044;50045;50046;50047;50048 50045 12 EELEQHLANVWEVMR Unmodified 1881.9043 0.90433206 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.724 44.248 3 0.022553 21529 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 45.014 41.953 273830000 16092000 16978000 16378000 2379100 0 0 0 11419000 9602700 0 0 0 0 24810000 20696000 0 0 0 46020000 60914000 45118000 0 3423400 0 4379 1343 4263 82138;82139;82140;82141;82142;82143;82144;82145;82146;82147;82148;82149 50049;50050;50051;50052;50053 50051 0 EELFITTK Unmodified 979.52261 0.52261272 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 28.514 27.218 2 0.00049564 12899 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 135.77 75.408 687510000 131240000 115120000 109990000 0 0 0 79913000 93106000 95627000 0 0 0 0 0 18460000 0 0 0 23085000 0 20972000 0 0 0 4380 1960 4264 82150;82151;82152;82153;82154;82155;82156;82157;82158 50054;50055;50056;50057;50058;50059;50060;50061 50054 8 EELKDELEIVMR Unmodified 1502.765 0.76504461 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 40.463 38.737 2;3 6.9233E-08 18675 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.34 153.61 554450000 86108000 80514000 73834000 1221700 1641000 1189400 35856000 32107000 31684000 3378200 2217600 1996600 29755000 34156000 26766000 0 1549300 0 37418000 35384000 33099000 2402400 2172700 0 4381 639 4265 82159;82160;82161;82162;82163;82164;82165;82166;82167;82168;82169;82170;82171;82172;82173;82174;82175;82176;82177;82178;82179;82180;82181;82182;82183;82184;82185;82186;82187;82188;82189;82190;82191;82192 50062;50063;50064;50065;50066;50067;50068;50069;50070;50071;50072;50073;50074;50075;50076;50077;50078;50079;50080;50081;50082 50079 21 EELLAIAPVFGQK Unmodified 1413.7868 0.78676633 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 50.017 48.818 2;3 5.8373E-09 23800 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 168.8 151.77 4092800000 339020000 295740000 285090000 0 0 0 298150000 296810000 270790000 0 0 0 359080000 364220000 365640000 41356000 31383000 38716000 369670000 383100000 354020000 0 0 0 4382 712 4266 82193;82194;82195;82196;82197;82198;82199;82200;82201;82202;82203;82204;82205;82206;82207;82208;82209;82210;82211;82212;82213;82214;82215;82216;82217;82218;82219;82220 50083;50084;50085;50086;50087;50088;50089;50090;50091;50092;50093;50094;50095;50096;50097;50098;50099;50100;50101;50102;50103;50104;50105;50106;50107;50108;50109 50093 27 EELLAVGR Unmodified 885.49198 0.4919813 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.114 24.067 2 0.00011391 10867 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.38 106.81 1341700000 55093000 58027000 53522000 0 0 0 317810000 366460000 342100000 0 3808900 0 17751000 17392000 18401000 0 0 0 32902000 30855000 27536000 0 0 0 4383 1265 4267 82221;82222;82223;82224;82225;82226;82227;82228;82229;82230;82231;82232;82233 50110;50111;50112;50113;50114;50115;50116;50117;50118;50119;50120;50121 50112 8 EELLTTQEELQK Unmodified 1459.7406 0.740604 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.777 25.491 2 5.0228E-17 11570 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 215.93 204.77 173030000 22395000 24040000 20332000 1709400 1678700 1659500 8716500 12550000 10591000 8295900 9376800 6569800 7139300 5996700 6144700 0 0 0 7853500 7732200 8336300 626180 0 1287400 4384 982 4268 82234;82235;82236;82237;82238;82239;82240;82241;82242;82243;82244;82245;82246;82247;82248;82249;82250;82251;82252;82253 50122;50123;50124;50125 50124 4 EELMAEAK Unmodified 919.43208 0.43208315 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By MS/MS By MS/MS 1 1 14.9 15.935 2 0.01678 5047 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 67.981 14.013 55041000 0 0 0 0 0 0 0 0 0 0 0 0 0 23000000 32041000 0 0 0 0 0 0 0 0 0 4385 600 4269 82254;82255 50126;50127 50127 2 EELNETNSETK Unmodified 1292.5732 0.57320432 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.592 11.823 2 2.8463E-10 2532 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 218.48 210.26 356110000 0 0 0 4958800 0 0 0 0 0 31589000 30818000 30366000 0 0 0 85987000 74607000 61784000 0 0 0 14956000 13347000 7702600 4386 458 4270 82256;82257;82258;82259;82260;82261;82262;82263;82264;82265 50128;50129;50130;50131;50132;50133 50130 6 EELNETNSETKR Unmodified 1448.6743 0.67431535 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 2 2 2 2 2 1 1 2 2 11.017 11.211 2;3 6.3424E-31 2213 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 264.37 260.36 488970000 0 0 6113200 0 0 0 0 0 0 20639000 22830000 20936000 0 0 0 106410000 97921000 111650000 0 3642500 0 27242000 36221000 35376000 4387 458 4271 82266;82267;82268;82269;82270;82271;82272;82273;82274;82275;82276;82277;82278;82279;82280;82281;82282;82283 50134;50135;50136;50137;50138;50139;50140;50141;50142;50143;50144;50145;50146 50135 13 EELSAFLSQCR Unmodified 1338.6238 0.6238001 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 37.852 36.177 2;3 5.7974E-11 17398 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 200.07 192.69 534110000 84433000 71750000 69411000 289710 0 0 35949000 39619000 39998000 0 0 0 26844000 25562000 20998000 0 0 0 39213000 44639000 35405000 0 0 0 4388 1788 4272 82284;82285;82286;82287;82288;82289;82290;82291;82292;82293;82294;82295;82296;82297;82298;82299;82300;82301;82302;82303;82304;82305;82306;82307;82308 50147;50148;50149;50150;50151;50152;50153;50154;50155;50156;50157 50150 9 EELTEASNELFSLIASGVIK Unmodified 2149.1154 0.11543027 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.755 54.271 2 5.7762E-56 26930 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 276.19 252.72 423980000 66286000 64477000 68733000 0 0 0 49236000 72244000 52406000 0 0 0 10219000 0 9062500 0 0 0 11365000 9635700 10320000 0 0 0 4389 1316 4273 82309;82310;82311;82312;82313;82314;82315;82316;82317;82318;82319 50158;50159 50159 2 EELTNGGYNIGR Unmodified 1321.6262 0.62624295 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 1 1 1 1 22.692 22.142 2 3.4278E-08 9639 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 195.17 190.56 1215600000 107580000 91786000 85601000 0 0 0 153990000 143320000 139410000 0 0 0 75971000 72792000 66133000 0 0 0 89070000 96067000 93921000 0 0 0 4390 256 4274 82320;82321;82322;82323;82324;82325;82326;82327;82328;82329;82330;82331;82332;82333 50160;50161;50162;50163;50164;50165;50166;50167 50160 7 EELVSHFAR Unmodified 1086.5458 0.54580778 814 P0ADW3 yhcB Inner membrane protein YhcB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 17.993 18.593 3 0.035008 7022 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 46.158 33.582 58520000 0 0 1160600 0 0 0 9684700 9330900 9357700 0 0 0 4336600 4787800 4492200 0 0 0 5082500 5560900 4726000 0 0 0 4391 814 4275 82334;82335;82336;82337;82338;82339;82340;82341;82342;82343 50168 50168 1 EELVTLTGGQK Unmodified 1173.6241 0.62411768 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.637 23.64 2 1.5261E-05 10655 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.48 116.7 579850000 71855000 63985000 57705000 0 0 0 38638000 39716000 36383000 0 0 0 42144000 40800000 37895000 0 0 0 50551000 49397000 50781000 0 0 0 4392 1136 4276 82344;82345;82346;82347;82348;82349;82350;82351;82352;82353;82354;82355 50169;50170;50171;50172;50173;50174;50175;50176;50177;50178;50179;50180 50171 11 EEMATEMER Unmodified 1124.4478 0.44780957 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.128 15.971 2 4.0362E-11 5350 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 205.7 188.46 1261100000 165050000 140470000 126160000 1121600 646130 813180 89529000 92593000 84776000 0 0 0 81920000 80408000 76987000 0 0 0 100310000 114060000 106250000 0 0 0 4393 228 4277 82356;82357;82358;82359;82360;82361;82362;82363;82364;82365;82366;82367;82368;82369;82370 50181;50182;50183;50184;50185;50186;50187;50188;50189;50190;50191;50192 50188 12 EEMFGPVAAITIAK Unmodified 1475.7694 0.76940171 1825 P76149 sad Succinate semialdehyde dehydrogenase [NAD(P)+] Sad yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 47.94 46.586 2 6.1954E-05 22689 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.187 85.915 76217000 20647000 18934000 14953000 0 0 0 4005800 0 0 0 0 0 4757800 8054100 0 0 0 0 0 0 4864800 0 0 0 4394 1825 4278 82371;82372;82373;82374;82375;82376;82377 50193;50194;50195 50194 3 EEMGEILAK Unmodified 1018.5005 0.50049707 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 24.652 23.896 2 0.0091143 10638 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.26 61.849 40439000 0 0 40439000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4395 1052 4279 82378;82379;82380;82381;82382 50196;50197;50198;50199;50200 50199 5 EEMKPEMGDYGR Unmodified 1440.6014 0.6013501 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.762 17.52 2;3 4.6166E-08 6257 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.34 166.34 656730000 47994000 42420000 46797000 0 0 0 92217000 90548000 84301000 0 0 0 40638000 36773000 40659000 0 0 0 46319000 46101000 41966000 0 0 0 4396 1588 4280 82383;82384;82385;82386;82387;82388;82389;82390;82391;82392;82393;82394;82395;82396;82397;82398;82399;82400;82401;82402;82403;82404;82405;82406 50201;50202;50203;50204;50205;50206;50207;50208;50209;50210;50211;50212;50213;50214;50215;50216;50217;50218 50211 17 EEMNNAGAIEVSMPVVQPADLWQESGR Unmodified 2956.3695 0.36950626 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.908 52.468 2;3 1.9416E-107 25716 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 329.97 318.69 610140000 46973000 41622000 44939000 0 0 0 34389000 32498000 32700000 0 0 0 62754000 65014000 60229000 0 0 0 72445000 59651000 56930000 0 0 0 4397 1120 4281 82407;82408;82409;82410;82411;82412;82413;82414;82415;82416;82417;82418;82419;82420;82421;82422;82423;82424;82425;82426;82427;82428;82429;82430 50219;50220;50221;50222;50223;50224;50225;50226;50227;50228;50229;50230;50231;50232 50220 14 EEMVDRIRAAVDAK Unmodified 1601.8195 0.8195398 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.954 51.914 3 0.091707 21159 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 26.124 17.074 758230000 0 0 0 49084000 45941000 50697000 0 0 0 80987000 74673000 66613000 0 0 0 55285000 44997000 100460000 0 0 0 66303000 58243000 64941000 4398 1914 4282 82431;82432;82433;82434;82435;82436;82437;82438;82439;82440;82441;82442 50233;50234 50233 2 EENGLLTYIGTR Unmodified 1364.6936 0.69359423 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 40.506 38.789 2 0.00075383 15155 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 80.763 77.824 14821000 0 0 0 694280 0 550420 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2169900 0 0 11406000 4399 1616 4283 82443;82444;82445;82446 50235 50235 1 EENIVFEVPK Unmodified 1202.6183 0.61830402 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 36.361 34.854 2 0.0004535 17034 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 102.07 97.769 518210000 37785000 31239000 28052000 0 0 0 0 49268000 47405000 0 0 0 49847000 39144000 37896000 0 0 0 65829000 62771000 68975000 0 0 0 4400 1650 4284 82447;82448;82449;82450;82451;82452;82453;82454;82455;82456;82457 50236;50237;50238;50239;50240;50241;50242;50243;50244 50236 6 EENPFLGWR Unmodified 1146.5458 0.54580778 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.804 40.097 2 1.0438E-05 18770 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 166.17 149.97 5748100000 342340000 333550000 311410000 3558800 3702200 3282900 510260000 511600000 519600000 9421100 8543700 9065800 568400000 513810000 503040000 3270800 0 2613300 528630000 506670000 540850000 4720600 5199500 4529300 4401 192 4285 82458;82459;82460;82461;82462;82463;82464;82465;82466;82467;82468;82469;82470;82471;82472;82473;82474;82475;82476;82477;82478;82479;82480 50245;50246;50247;50248;50249;50250;50251;50252;50253;50254;50255;50256;50257;50258;50259;50260;50261 50259 17 EENVIGHYITDR Unmodified 1444.6947 0.69465686 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 27.305 26.128 3 0.01313 12280 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 41.401 33.676 232650000 36326000 26210000 31951000 0 0 0 24127000 30716000 31272000 0 0 0 13037000 0 10467000 0 0 0 13851000 14698000 0 0 0 0 4402 1830 4286 82481;82482;82483;82484;82485;82486;82487;82488;82489;82490 50262;50263;50264;50265 50262 3 EENVIGHYITDRDHIIK Unmodified 2051.0436 0.043602734 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.554 26.406 3 1.9311E-06 12370 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.358 76.204 188390000 23743000 22780000 27947000 0 0 0 15765000 17295000 15191000 0 0 0 9683100 7024800 7390600 0 0 0 11772000 14829000 14966000 0 0 0 4403 1830 4287 82491;82492;82493;82494;82495;82496;82497;82498;82499;82500;82501;82502 50266;50267;50268;50269;50270 50266 5 EEPAAAPAPTKEEVLLTEIR Unmodified 2163.1423 0.14231373 308 P0A742 mscL Large-conductance mechanosensitive channel yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.399 34.652 3 4.7464E-07 13586 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 100.67 97.662 133590000 13489000 12904000 10649000 1268900 1225800 1135300 13057000 10398000 11356000 5015600 3289300 4101100 3809400 7412200 6414500 0 0 0 8317000 8648500 7208200 0 0 3889900 4404 308 4288 82503;82504;82505;82506;82507;82508;82509;82510;82511;82512;82513;82514;82515;82516;82517;82518;82519;82520;82521 50271;50272;50273;50274 50273 3 EEPLEILR Unmodified 997.54441 0.5444108 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.244 33.769 2 0.00034224 15544 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 124.37 113.55 161450000 21638000 15637000 12117000 0 0 0 14691000 13814000 12447000 0 0 0 0 14549000 12182000 0 0 0 13478000 17369000 13528000 0 0 0 4405 289 4289 82522;82523;82524;82525;82526;82527;82528;82529;82530;82531;82532;82533 50275;50276;50277;50278;50279;50280;50281;50282;50283;50284;50285 50283 10 EEPLEILREEDFVAER Unmodified 1972.9742 0.97418577 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 2 1 1 1 2 2 2 2 2 2 45.262 43.863 2;3 1.8704E-13 21368 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 190.26 157.2 622950000 12666000 11489000 74592000 0 0 0 7772600 3564600 0 0 1317000 0 69827000 72442000 65391000 0 0 0 97953000 112720000 93215000 0 0 0 4406 289 4290 82534;82535;82536;82537;82538;82539;82540;82541;82542;82543;82544;82545;82546;82547;82548;82549;82550;82551;82552 50286;50287;50288 50287 3 EEPQSIEVHPR Unmodified 1319.647 0.64697839 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 13.61 14.476 2;3 0.00027911 4482 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 108.81 89.536 438570000 58715000 62427000 58000000 0 0 0 30327000 31075000 27430000 0 0 0 26426000 26053000 25311000 0 0 0 27915000 34150000 30746000 0 0 0 4407 740 4291 82553;82554;82555;82556;82557;82558;82559;82560;82561;82562;82563;82564;82565;82566;82567;82568;82569;82570;82571;82572;82573;82574;82575;82576 50289;50290;50291;50292;50293;50294;50295;50296 50293 6 EEQHLYDLCELEALSLK Unmodified 2089.0038 0.003771334 875 P0AEN1 fre NAD(P)H-flavin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 49.108 47.746 2;3 2.0776E-39 23712 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 295.3 287.2 1108600000 113160000 97688000 105180000 0 0 0 76750000 79586000 73759000 0 0 0 78483000 75604000 79371000 0 0 0 108100000 113420000 107480000 0 0 0 4408 875 4292 82577;82578;82579;82580;82581;82582;82583;82584;82585;82586;82587;82588;82589;82590;82591;82592;82593;82594;82595;82596;82597;82598;82599;82600 50297;50298;50299;50300;50301;50302;50303;50304;50305;50306;50307;50308;50309;50310;50311;50312;50313;50314;50315;50316;50317;50318;50319;50320 50298 23 EEQHTPVSDISALTVGQALK Unmodified 2122.0906 0.090612506 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 2 1 1 2 2 2 1 1 1 40.497 38.853 2;3 3.7389E-37 18941 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 278.84 273.84 1201300000 110370000 94690000 81079000 4086400 3272100 3467000 59421000 61087000 69997000 11829000 12650000 11539000 75583000 89431000 74612000 40350000 29497000 28376000 100910000 97113000 97781000 16803000 16402000 10933000 4409 1576 4293 82601;82602;82603;82604;82605;82606;82607;82608;82609;82610;82611;82612;82613;82614;82615;82616;82617;82618;82619;82620;82621;82622;82623;82624;82625;82626;82627;82628;82629;82630;82631;82632;82633;82634;82635;82636;82637;82638;82639 50321;50322;50323;50324;50325;50326;50327;50328;50329;50330;50331;50332;50333;50334;50335;50336;50337;50338;50339;50340;50341;50342;50343;50344 50335 24 EEQILFPMIK Unmodified 1246.6631 0.66314572 1737 P69506 ytfE Iron-sulfur cluster repair protein YtfE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.585 46.196 2 0.0044542 22871 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 80.438 76.139 58458000 3511800 4775500 3179300 0 0 0 6279100 9123300 7901300 0 0 0 5194400 3441600 3606400 0 0 0 3696400 3984000 3765000 0 0 0 4410 1737 4294 82640;82641;82642;82643;82644;82645;82646;82647;82648;82649;82650;82651 50345;50346;50347 50346 3 EEQLDELLNAVDITLKPEQIAELETPYKPHPVVGFK Unmodified 4102.1514 0.15142843 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 1 54.303 52.851 4;5 3.1794E-47 26208 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 209.47 208.38 1097900000 200450000 222770000 198090000 0 0 0 66479000 83380000 62997000 0 0 0 33490000 39933000 39480000 0 0 0 62990000 55724000 32131000 0 0 0 4411 1934 4295 82652;82653;82654;82655;82656;82657;82658;82659;82660;82661;82662;82663;82664;82665;82666;82667;82668;82669;82670;82671;82672;82673;82674 50348;50349;50350;50351 50348 4 EEQQDNAIFSAK Unmodified 1378.6365 0.63647328 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.833 21.88 2 2.6298E-07 8797 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 156.16 151.86 1709000000 78223000 82963000 59287000 0 0 0 182560000 195850000 194080000 0 0 0 163270000 170110000 142650000 0 0 0 147800000 151450000 140710000 0 0 0 4412 1487 4296 82675;82676;82677;82678;82679;82680;82681;82682;82683;82684;82685;82686 50352;50353;50354;50355;50356;50357;50358 50356 7 EEQQVAESIALTDDTLVPFLAGETVR Unmodified 2830.4236 0.42363354 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 55.675 54.22 3 7.9679E-11 26889 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.4 122.03 192370000 72745000 58522000 59148000 0 0 0 66156 0 0 0 0 0 0 0 0 0 0 0 1887900 0 0 0 0 0 4413 104 4297 82687;82688;82689;82690;82691 50359 50359 1 EERPEVTK Unmodified 986.50327 0.50327426 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 10.589 10.838 2 0.00060734 2035 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 144.09 86.53 107540000 0 0 0 0 0 0 2993700 4316900 0 16165000 15842000 18011000 0 0 0 0 20229000 21325000 0 0 0 0 0 8661100 4414 1338 4298 82692;82693;82694;82695;82696;82697;82698;82699;82700 50360;50361;50362;50363;50364 50364 5 EERPEVTKK Unmodified 1114.5982 0.59823728 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 10.419 10.495 2 0.0010931 1924 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 120.87 89.579 79271000 0 0 0 0 0 0 0 0 0 12085000 10375000 8702600 0 0 0 27298000 9451300 4651900 0 0 0 0 0 6707300 4415 1338 4299 82701;82702;82703;82704;82705;82706;82707 50365;50366;50367;50368;50369;50370 50365 6 EERPTDVVFAGAK Unmodified 1417.7201 0.72014333 1915 P77544 yfcF Glutathione S-transferase YfcF yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 22.869 22.366 2 0.099179 9655 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.385 52.706 11756000 4413000 4241000 3102100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4416 1915 4300 82708;82709;82710 50371 50371 0 EETFGPLAPLFR Unmodified 1375.7136 0.71360139 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.302 51.862 2 7.5969E-06 25441 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.88 156.27 582170000 110660000 102800000 94641000 0 0 0 49969000 49604000 50916000 0 0 0 16298000 14701000 12558000 0 0 0 29043000 26789000 24189000 0 0 0 4417 1258 4301 82711;82712;82713;82714;82715;82716;82717;82718;82719;82720;82721;82722 50372;50373;50374;50375;50376;50377;50378;50379;50380 50379 8 EETGISELDIAK Unmodified 1303.6507 0.65072636 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 30.883 29.698 2;3 1.3049E-05 14931 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.76 115.72 746450000 45740000 45479000 42532000 0 0 0 50562000 53750000 93018000 0 0 0 0 73092000 72572000 0 0 0 91541000 86203000 91961000 0 0 0 4418 1409 4302 82723;82724;82725;82726;82727;82728;82729;82730;82731;82732;82733;82734 50381;50382;50383;50384;50385;50386;50387;50388;50389;50390;50391;50392 50381 12 EETGYGFSLYSTPSENLCDR Unmodified 2323.9903 0.99030611 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 43.601 42.028 2 3.5448E-19 20516 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.5 174.32 67002000 0 0 0 0 0 0 9991900 5840300 6494100 0 0 0 7525900 6100500 6120100 0 0 0 8854100 8386200 7689000 0 0 0 4419 1323 4303 82735;82736;82737;82738;82739;82740;82741;82742;82743 50393;50394 50393 2 EETLAQHGAVSEPVVVEMAIGALK Unmodified 2477.2836 0.28357501 242 P0A6G3 pncC Nicotinamide-nucleotide amidohydrolase PncC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.924 50.676 3 4.7931E-15 25065 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 135.68 132.8 281820000 17485000 22271000 16643000 0 0 0 32980000 30069000 29157000 0 0 0 15152000 15543000 13882000 0 0 0 30125000 28113000 30402000 0 0 0 4420 242 4304 82744;82745;82746;82747;82748;82749;82750;82751;82752;82753;82754;82755 50395;50396;50397;50398;50399;50400;50401;50402;50403;50404;50405;50406 50396 12 EETQHATVSER Unmodified 1285.5899 0.58985744 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 8.9644 9.8136 2 1.8475E-07 2362 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 167.09 143.73 233920000 32628000 26754000 21061000 0 0 0 13338000 11160000 8776900 0 0 0 15471000 13659000 1988600 0 0 0 26352000 29629000 33105000 0 0 0 4421 1221 4305 82756;82757;82758;82759;82760;82761;82762;82763;82764;82765;82766;82767 50407;50408;50409;50410;50411;50412 50411 6 EEVFGPVVNLVR Unmodified 1356.7402 0.74015049 1948 P80668 feaB Phenylacetaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 46.595 45.356 2 5.6928E-06 22241 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.23 121.64 19314000 6556500 6311700 6445500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4422 1948 4306 82768;82769;82770 50413;50414 50413 2 EEVGALVK Unmodified 843.47018 0.47018322 386 P0A809 ruvA Holliday junction ATP-dependent DNA helicase RuvA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 17.821 18.441 2 0.016053 6391 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 69.176 30.357 218340000 13769000 0 0 4519400 4241200 3954400 28985000 30482000 24491000 0 0 0 0 18019000 18355000 0 0 0 22934000 24294000 22366000 0 1935300 0 4423 386 4307 82771;82772;82773;82774;82775;82776;82777;82778;82779;82780;82781;82782;82783 50415;50416;50417;50418 50417 4 EEVLLTEIR Unmodified 1100.6077 0.60773933 308 P0A742 mscL Large-conductance mechanosensitive channel yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 35.946 33.616 2 0.00036241 13213 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 112.41 102.82 18800000 0 0 0 0 0 0 0 0 0 5487400 4960500 4350300 0 0 0 0 0 0 0 0 0 0 1555500 2446300 4424 308 4308 82784;82785;82786;82787;82788 50419;50420 50419 2 EEVMLTCR Unmodified 1036.4682 0.46815109 1680 P64506 yebY Uncharacterized protein YebY yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 19.351 19.837 2 0.00022699 7511 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.29 151.29 344760000 34573000 26680000 25952000 0 0 0 0 30317000 29858000 0 0 0 31792000 35667000 0 0 0 0 41219000 39811000 48890000 0 0 0 4425 1680 4309 82789;82790;82791;82792;82793;82794;82795;82796;82797;82798 50421 50421 1 EEVPCYCGK Unmodified 1140.458 0.45798033 1231 P23917 mak Fructokinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 16.637 17.395 3 0.17192 6215 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 4.6957 3.1008 119550000 8833900 5351500 0 0 0 0 9767600 7500400 4502400 0 0 0 10200000 8071200 8978800 0 0 0 19868000 17725000 18750000 0 0 0 4426 1231 4310 82799;82800;82801;82802;82803;82804;82805;82806;82807;82808;82809 50422;50423;50424 50422 3 EEVVGAEMMR Unmodified 1149.5158 0.51582956 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.214 24.372 2 0.00013069 8464 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 101.64 90.233 76464000 0 4336000 4618700 0 0 0 0 0 0 6285300 4279000 0 6103300 6042000 4606400 6549900 2810400 6173500 8349300 8283100 8026800 0 0 0 4427 1057 4311 82810;82811;82812;82813;82814;82815;82816;82817;82818;82819;82820;82821;82822;82823;82824;82825 50425;50426;50427;50428;50429 50429 5 EEWAGFR Unmodified 893.40317 0.40316629 234 P0A6E1 aroL Shikimate kinase 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.868 25.721 2 0.027836 11676 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.234 65.38 74811000 12110000 9099700 9393200 0 0 0 5337300 4858000 6386400 0 0 0 2662700 4049400 3429500 0 0 0 6356900 6204900 4923400 0 0 0 4428 234 4312 82826;82827;82828;82829;82830;82831;82832;82833;82834;82835;82836;82837 50430;50431 50430 2 EEYPQSAAIDLR Unmodified 1390.6729 0.67285879 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 29.614 28.326 2 0.00011202 13259 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.095 83.17 256960000 22296000 20540000 26134000 0 0 0 63321000 59377000 54475000 0 0 0 3297200 2218900 2438000 0 0 0 2860700 0 0 0 0 0 4429 1755;1756 4313 82838;82839;82840;82841;82842;82843;82844;82845;82846;82847 50432 50432 1 EFAAVPIR Unmodified 901.50215 0.50215205 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.105 26.949 2 0.00043507 11778 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.27 132.77 433050000 47436000 35242000 29493000 0 0 0 53119000 43352000 44009000 0 0 0 26328000 26635000 26693000 0 0 0 31237000 33624000 35884000 0 0 0 4430 880 4314 82848;82849;82850;82851;82852;82853;82854;82855;82856;82857;82858;82859 50433;50434;50435;50436;50437;50438;50439;50440;50441;50442;50443;50444 50443 12 EFADNADK Unmodified 908.38758 0.3875758 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.477 12.231 2 0.0012043 3253 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.81 74.68 219430000 0 8125700 7129300 0 0 649910 24974000 16022000 19978000 0 0 0 19040000 13004000 17662000 0 0 0 22292000 27460000 19897000 7777800 8665500 6753600 4431 205 4315 82860;82861;82862;82863;82864;82865;82866;82867;82868;82869;82870;82871;82872;82873;82874 50445;50446;50447;50448;50449;50450;50451 50449 6 EFADNADKTHGR Unmodified 1359.6167 0.61674089 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 10.343 10.888 2;3 4.4286E-13 2027 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 159.34 147.49 123510000 0 0 0 0 112040 197180 0 0 0 14735000 0 9399900 0 0 8329400 0 0 0 0 0 0 33502000 27041000 30193000 4432 205 4316 82875;82876;82877;82878;82879;82880;82881;82882;82883 50452;50453;50454;50455 50455 4 EFADNLDSDFK Unmodified 1299.5619 0.56191135 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.33 32.865 2 1.3631E-05 14941 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 169.09 169.09 6117400000 861250000 860650000 753890000 14944000 14783000 14380000 280600000 257290000 244420000 45028000 30512000 43286000 328190000 316030000 313730000 34381000 24033000 24187000 503850000 549330000 505470000 36471000 32769000 27975000 4433 374 4317 82884;82885;82886;82887;82888;82889;82890;82891;82892;82893;82894;82895;82896;82897;82898;82899;82900;82901;82902;82903;82904;82905;82906;82907 50456;50457;50458;50459;50460;50461;50462;50463;50464;50465;50466;50467;50468;50469;50470;50471;50472;50473;50474;50475;50476 50476 21 EFADNLDSDFKVR Unmodified 1554.7314 0.7314363 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.221 31.739 3 1.2839E-05 11973 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 106.01 102.69 88081000 0 0 0 6490100 6197700 7814000 0 0 0 7523200 7281500 6379000 0 0 0 7172700 7107100 7598100 0 0 0 9651300 6355600 8510900 4434 374 4318 82908;82909;82910;82911;82912;82913;82914;82915;82916;82917;82918;82919 50477;50478;50479;50480;50481;50482;50483;50484;50485;50486 50483 10 EFADVQVVAPDR Unmodified 1344.6674 0.66737948 393 P0A840 surE 5'/3'-nucleotidase SurE yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 32.372 30.974 2 0.028181 14480 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 56.404 50.1 110180000 14069000 15311000 12611000 0 0 0 10266000 7698000 13649000 0 0 0 10457000 0 0 0 0 0 12903000 13218000 0 0 0 0 4435 393 4319 82920;82921;82922;82923;82924;82925;82926;82927;82928 50487 50487 0 EFAEATGIDSLAVAIGTAHGMYASAPALDFSR Unmodified 3238.5605 0.56047815 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 2 1 1 1 54.722 53.28 3;4 1.5606E-43 21425 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 213.78 213.29 2905400000 162730000 71445000 146470000 28623000 10964000 24515000 394110000 437430000 418790000 91888000 84770000 82228000 217550000 197100000 184880000 0 0 0 75693000 79233000 175430000 8709300 5295500 7576600 4436 1045 4320 82929;82930;82931;82932;82933;82934;82935;82936;82937;82938;82939;82940;82941;82942;82943;82944;82945;82946;82947;82948;82949;82950;82951;82952;82953;82954;82955;82956;82957;82958;82959;82960;82961;82962;82963 50488;50489;50490;50491;50492;50493;50494;50495;50496;50497;50498 50490 8 EFAEPACVIVK Unmodified 1261.6377 0.63765925 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 32.048 30.759 2 0.0014865 14405 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 97.635 94.225 1246700000 364730000 345650000 349310000 0 0 0 0 13346000 12328000 0 0 0 22794000 21522000 19367000 0 0 0 28166000 36352000 33122000 0 0 0 4437 1111 4321 82964;82965;82966;82967;82968;82969;82970;82971;82972;82973;82974 50499;50500;50501;50502;50503 50502 5 EFAQLAFK Unmodified 952.50182 0.5018177 796 P0ADP2 yigI Uncharacterized protein YigI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.495 32.055 2 0.01232 15235 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 75.311 55.834 127760000 24871000 15167000 16596000 0 0 0 5690000 4615600 7714100 0 0 0 5706100 5747200 4410300 0 0 0 9904600 14369000 12974000 0 0 0 4438 796 4322 82975;82976;82977;82978;82979;82980;82981;82982;82983;82984;82985;82986 50504;50505;50506;50507;50508;50509;50510;50511 50507 8 EFASEPVWFGDSDR Unmodified 1640.7107 0.71070086 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.407 42.904 2 1.5723E-14 20911 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 191.52 191.52 379740000 9696500 0 8453000 3156500 2914400 3203600 24510000 27962000 21046000 15985000 15511000 14265000 25437000 20173000 23594000 3914000 3426300 2782400 43779000 40076000 41445000 8321800 9895900 10197000 4439 844 4323 82987;82988;82989;82990;82991;82992;82993;82994;82995;82996;82997;82998;82999;83000;83001;83002;83003;83004;83005;83006;83007;83008;83009 50512;50513;50514;50515;50516;50517;50518;50519;50520;50521;50522;50523 50520 12 EFDAAGISFPYPQMDVNFKR Unmodified 2331.0994 0.099403054 1042 P0C0S1 mscS Small-conductance mechanosensitive channel yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 49.983 48.981 3 3.4124E-10 19852 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 117.26 109.17 60115000 0 0 0 5166500 6225100 4444800 0 0 0 10421000 10792000 10416000 0 0 0 2925500 2154000 2323200 0 0 0 0 5246500 0 4440 1042 4324 83010;83011;83012;83013;83014;83015;83016;83017;83018;83019 50524;50525;50526;50527;50528;50529 50525 6 EFDAVVIGAGGAGMR Unmodified 1448.7082 0.70819844 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 3 3 2 1 2 2 1 1 2 2 2 1 1 1 2 2 3 2 2 3 39.219 37.52 2;3 5.6221E-20 18190 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 204.28 190.08 744500000 39587000 27618000 30776000 18660000 21527000 17411000 25546000 24222000 27777000 13031000 8551100 13980000 49290000 47713000 42586000 4839400 3433600 3400000 81181000 82381000 94746000 22318000 20137000 23786000 4441 698 4325 83020;83021;83022;83023;83024;83025;83026;83027;83028;83029;83030;83031;83032;83033;83034;83035;83036;83037;83038;83039;83040;83041;83042;83043;83044;83045;83046;83047;83048;83049;83050;83051;83052;83053;83054;83055;83056;83057;83058;83059;83060;83061;83062;83063 50530;50531;50532;50533;50534;50535;50536;50537;50538;50539;50540;50541;50542;50543;50544;50545;50546;50547;50548;50549;50550;50551;50552;50553 50540 21 EFDFEVR Unmodified 940.42905 0.42904669 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.116 32.557 2 0.00014506 15508 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 170.17 43.491 3463700000 186090000 203520000 178050000 1083800 0 1918200 405420000 385230000 383040000 1908800 0 0 287870000 244150000 244420000 0 0 0 310940000 316690000 313410000 0 0 0 4442 441 4326 83064;83065;83066;83067;83068;83069;83070;83071;83072;83073;83074;83075;83076;83077;83078 50554;50555;50556;50557;50558;50559;50560;50561;50562;50563;50564;50565 50557 12 EFDNSYTR Unmodified 1030.4356 0.43558863 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.207 16.038 2 0.000154 5452 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 155.51 155.51 2886900000 177760000 151970000 137900000 602180 450100 0 336120000 359520000 295680000 0 0 0 249660000 209380000 219150000 0 0 0 269440000 245520000 233720000 0 0 0 4443 1572 4327 83079;83080;83081;83082;83083;83084;83085;83086;83087;83088;83089;83090;83091;83092 50566;50567;50568;50569;50570;50571;50572 50567 7 EFEQIYPK Unmodified 1052.5179 0.51786169 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 2 2 2 1 1 1 25.898 24.7 1;2 0.00036361 11337 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 153.71 127.11 8092700000 195330000 154250000 137610000 0 0 0 954390000 914850000 917070000 707270 1231300 0 865890000 816690000 793880000 0 0 0 778190000 775050000 787540000 0 0 0 4444 239 4328 83093;83094;83095;83096;83097;83098;83099;83100;83101;83102;83103;83104;83105;83106;83107;83108;83109;83110;83111;83112 50573;50574;50575;50576;50577;50578;50579;50580;50581;50582;50583;50584;50585 50575 13 EFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAK Unmodified 3856.9022 0.90221338 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 2 2 2 1 1 2 54.721 53.282 3;4 3.4833E-25 26186 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.88 165.64 1076500000 0 8975800 10447000 0 0 0 38383000 212230000 40396000 0 0 0 168500000 191440000 162710000 0 0 0 39791000 38668000 164970000 0 0 0 4445 239 4329 83113;83114;83115;83116;83117;83118;83119;83120;83121;83122;83123;83124;83125;83126;83127;83128 50586;50587;50588;50589;50590 50587 5 EFFDAVPALAR Unmodified 1234.6346 0.63462279 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.755 45.457 2 0.00018515 16430 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 131.22 126.26 313360000 23081000 26975000 20225000 0 0 1462200 21970000 18436000 18061000 5398200 3985100 2871300 12725000 9500900 13029000 40884000 24367000 24394000 13539000 15377000 14479000 0 2604900 0 4446 222 4330 83129;83130;83131;83132;83133;83134;83135;83136;83137;83138;83139;83140;83141;83142;83143;83144;83145;83146;83147;83148 50591;50592;50593;50594;50595;50596;50597 50592 5 EFFDLRPYGLIQMLDLLHPIYK Unmodified 2720.44 0.44001607 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 55.666 54.225 3;4 7.1471E-22 26731 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 171.06 165.86 2475200000 117850000 119850000 193940000 18978000 17036000 17184000 315590000 265250000 298610000 49512000 54367000 54432000 149730000 140940000 82453000 0 0 0 184640000 200960000 172690000 5255500 4108900 11795000 4447 388 4331 83149;83150;83151;83152;83153;83154;83155;83156;83157;83158;83159;83160;83161;83162;83163;83164;83165;83166;83167;83168;83169;83170;83171;83172;83173;83174;83175;83176;83177;83178;83179;83180;83181;83182;83183;83184;83185 50598;50599;50600;50601;50602;50603;50604;50605;50606;50607;50608 50604 11 EFFDPLR Unmodified 922.45487 0.45486751 1538 P39407 yjjU Uncharacterized protein YjjU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.348 38.521 2 0.12482 19222 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 49.358 40.118 110000000 8881900 7988100 7762100 560190 884580 670400 16502000 13857000 16247000 7880700 5090200 3720900 3413900 3100700 2525300 0 0 0 3438000 4015600 3462500 0 0 0 4448 1538 4332 83186;83187;83188;83189;83190;83191;83192;83193;83194;83195;83196;83197;83198;83199;83200;83201;83202;83203 50609 50609 1 EFFGLTKPA Unmodified 1008.528 0.52803245 983 P0AG40 ribF Riboflavin biosynthesis protein RibF;Riboflavin kinase;FMN adenylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.313 33.814 2 0.040431 16232 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 61.962 58.835 155270000 21469000 15255000 14925000 0 0 0 10749000 9713000 10880000 0 0 0 9512800 9857200 9609500 0 0 0 11893000 16695000 14712000 0 0 0 4449 983 4333 83204;83205;83206;83207;83208;83209;83210;83211;83212;83213;83214;83215 50610;50611;50612;50613;50614;50615;50616 50613 7 EFFGSSQLSQFMDQNNPLSEITHK Oxidation (M) 2799.281 0.28100883 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 4 5 4 5 3 3 50.387 49.53 2;3;4 6.9869E-30 18571 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 182.57 182.57 949440000 0 0 0 0 1157700 0 0 0 0 68301000 70171000 76331000 0 0 0 164120000 143950000 139880000 0 0 0 104540000 90144000 90853000 4450 463 4334 83216;83217;83218;83219;83220;83221;83222;83223;83224;83225;83226;83227;83228;83229;83230;83231;83232;83233;83234;83235;83236;83237;83238;83239;83240;83241;83242;83243;83244;83245;83246;83247;83248 50617;50618;50619;50620;50621;50622;50623;50624;50625;50626;50627;50628;50629;50630;50631;50632;50633;50634;50635;50636;50637;50638;50639;50640;50641;50642;50643;50644;50645;50646;50647;50648;50649;50650;50651 50617 259 34 EFFGSSQLSQFMDQNNPLSEITHK Unmodified 2783.2861 0.2860942 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 1 2 2 3 2 4 5 4 3 3 3 4 5 4 3 3 3 5 4 5 53.82 52.62 2;3;4 3.4572E-111 19755 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 423.95 422.98 44737000000 475160000 495020000 491110000 42932000 42623000 45871000 37592000 314960000 36854000 4792200000 5011300000 4984100000 491780000 448690000 441940000 1812500000 1738900000 1964000000 506160000 562930000 489380000 6528600000 6302700000 6679600000 4451 463 4334 83249;83250;83251;83252;83253;83254;83255;83256;83257;83258;83259;83260;83261;83262;83263;83264;83265;83266;83267;83268;83269;83270;83271;83272;83273;83274;83275;83276;83277;83278;83279;83280;83281;83282;83283;83284;83285;83286;83287;83288;83289;83290;83291;83292;83293;83294;83295;83296;83297;83298;83299;83300;83301;83302;83303;83304;83305;83306;83307;83308;83309;83310;83311;83312;83313;83314;83315;83316;83317;83318;83319;83320;83321;83322;83323;83324;83325;83326;83327 50652;50653;50654;50655;50656;50657;50658;50659;50660;50661;50662;50663;50664;50665;50666;50667;50668;50669;50670;50671;50672;50673;50674;50675;50676;50677;50678;50679;50680;50681;50682;50683;50684;50685;50686;50687;50688;50689;50690;50691;50692;50693;50694;50695;50696;50697;50698;50699;50700;50701;50702;50703;50704 50659 53 EFFGSSQLSQFMDQNNPLSEITHKR Oxidation (M) 2955.3821 0.38211985 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 1 1 46.009 45.004 4 1.4329E-10 15385 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 127.8 121.24 85268000 0 0 0 0 0 0 0 0 0 3759500 4001000 3786100 0 0 0 22104000 17487000 20973000 0 0 0 5665800 3284800 4207200 4452 463 4335 83328;83329;83330;83331;83332;83333;83334;83335;83336;83337;83338;83339 50705;50706;50707;50708;50709;50710 50709 259 6 EFFGSSQLSQFMDQNNPLSEITHKR Unmodified 2939.3872 0.38720523 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 4 4 2 3 2 50.808 50.046 2;3;4;5 5.648E-84 20077 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 295.17 293.09 9158800000 0 0 0 0 0 0 0 0 0 278560000 301640000 268970000 0 0 0 2468200000 2374400000 2346100000 0 0 0 386370000 404670000 329900000 4453 463 4335 83340;83341;83342;83343;83344;83345;83346;83347;83348;83349;83350;83351;83352;83353;83354;83355;83356;83357;83358;83359;83360;83361;83362;83363 50711;50712;50713;50714;50715;50716;50717;50718;50719;50720;50721;50722;50723;50724;50725;50726;50727;50728;50729;50730;50731;50732;50733;50734;50735 50727 24 EFGDEGHR Unmodified 945.39406 0.39405816 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 0 By MS/MS 1 11.154 11.258 2 0.022461 2297 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 68.787 58.602 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4454 1739 4336 83364 50736 50736 1 EFGEDVEK Unmodified 951.41854 0.41854158 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.509 16.151 2 0.0062957 4457 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 85.212 63.081 846860000 50135000 49174000 52829000 5253100 5485000 5849300 87064000 74392000 80554000 15972000 14869000 13800000 63018000 51348000 59040000 0 0 0 68533000 71398000 63120000 5513700 4466500 5043600 4455 1962 4337 83365;83366;83367;83368;83369;83370;83371;83372;83373;83374;83375;83376;83377;83378;83379;83380;83381;83382;83383;83384;83385 50737;50738;50739;50740;50741;50742;50743;50744;50745;50746;50747;50748;50749;50750 50738 10 EFGEDVEKK Unmodified 1079.5135 0.5135046 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 2 2 1 1 2 2 2 2 1 1 1 1 1 2 2 1 2 2 2 12.212 12.832 2;3 0.0011725 3624 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.431 78.892 428370000 12853000 16084000 29468000 12018000 5397400 13655000 22891000 16740000 37001000 32030000 26863000 26467000 16770000 14841000 13957000 4193200 1435300 0 39693000 38212000 20179000 9091800 11241000 7294000 4456 1962 4338 83386;83387;83388;83389;83390;83391;83392;83393;83394;83395;83396;83397;83398;83399;83400;83401;83402;83403;83404;83405;83406;83407;83408;83409;83410;83411;83412;83413;83414;83415;83416;83417;83418;83419;83420;83421 50751;50752;50753;50754;50755;50756;50757;50758;50759;50760;50761;50762;50763 50755 13 EFGEEIAR Unmodified 949.45051 0.45051041 419 P0A8D0 nrdR Transcriptional repressor NrdR yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.311 20.726 2 0.0026172 7729 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 98.997 90.656 134790000 16634000 14706000 11777000 0 0 0 9874700 9514900 12140000 0 0 0 8736200 7705100 9861300 0 0 0 11001000 12297000 10539000 0 0 0 4457 419 4339 83422;83423;83424;83425;83426;83427;83428;83429;83430;83431;83432;83433 50764;50765;50766;50767;50768 50768 3 EFGEGEQLPSER Unmodified 1376.6208 0.62082322 465 P0A8W0 nanR Transcriptional regulator NanR yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 23.851 22.828 2 0.027972 10193 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 51.762 46.822 45120000 11800000 11278000 8354800 0 0 0 9204700 0 0 1697900 1706900 1078100 0 0 0 0 0 0 0 0 0 0 0 0 4458 465 4340 83434;83435;83436;83437;83438;83439;83440 50769;50770 50769 1 EFGELKEETCR Unmodified 1396.6293 0.62927941 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.651 17.408 2;3 7.7425E-06 6220 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 174.42 161.07 760430000 76064000 66781000 61752000 0 0 0 107430000 104980000 113000000 0 0 0 40646000 32633000 34159000 0 0 0 40657000 39743000 42580000 0 0 0 4459 468 4341 83441;83442;83443;83444;83445;83446;83447;83448;83449;83450;83451;83452;83453;83454;83455;83456;83457;83458;83459;83460;83461;83462;83463;83464 50771;50772;50773;50774;50775;50776;50777 50771 4 EFGINHDADFLAMNPNGLVPLLR Unmodified 2552.2846 0.28457806 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.594 53.176 3 0.06682 26444 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 39.188 36.576 192230000 39447000 50657000 0 0 0 0 19177000 0 0 0 0 0 15833000 14306000 10459000 0 0 0 12876000 13917000 15557000 0 0 0 4460 713 4342 83465;83466;83467;83468;83469;83470;83471;83472;83473 50778 50778 0 EFGLWDVVQQGK Unmodified 1404.7038 0.70376498 1821 P76142 lsrB Autoinducer 2-binding protein LsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.39 48.05 2 1.9861E-05 23513 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.2 145.02 462670000 167610000 134530000 127560000 0 0 0 4543600 0 0 0 0 0 0 4321200 4853600 0 0 0 8581100 10669000 0 0 0 0 4461 1821 4343 83474;83475;83476;83477;83478;83479;83480;83481 50779;50780;50781 50780 3 EFGVNLAK Unmodified 876.47052 0.47051757 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 2 6 6 6 3 2 3 2 2 3 2 2 2 2 2 2 2 2 2 3 3 4 26.411 25.219 1;2 0.0012781 8292 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 129.68 113.54 24995000000 756230000 726620000 680770000 2583300000 2193100000 2201900000 969330000 911150000 975960000 259630000 229310000 236060000 455870000 469100000 466500000 117470000 83138000 94138000 866670000 910770000 992920000 2533900000 2597200000 2683700000 4462 133 4344 83482;83483;83484;83485;83486;83487;83488;83489;83490;83491;83492;83493;83494;83495;83496;83497;83498;83499;83500;83501;83502;83503;83504;83505;83506;83507;83508;83509;83510;83511;83512;83513;83514;83515;83516;83517;83518;83519;83520;83521;83522;83523;83524;83525;83526;83527;83528;83529;83530;83531;83532;83533;83534;83535;83536;83537;83538;83539;83540;83541;83542;83543;83544;83545;83546;83547;83548;83549 50782;50783;50784;50785;50786;50787;50788;50789;50790;50791;50792;50793;50794;50795;50796;50797;50798;50799;50800;50801;50802;50803;50804;50805;50806;50807;50808;50809;50810;50811;50812;50813;50814;50815;50816;50817;50818;50819;50820;50821;50822;50823;50824;50825 50810 25 EFGYAQVEVVNDSALVR Unmodified 1894.9425 0.94249171 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 3 2 2 2 44.35 42.848 2;3 1.0497E-61 20748 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 301.93 282.8 1206000000 65629000 69103000 58453000 0 0 0 94442000 85118000 82268000 0 0 0 129150000 120000000 112940000 0 0 0 139820000 125670000 123360000 0 0 0 4463 86 4345 83550;83551;83552;83553;83554;83555;83556;83557;83558;83559;83560;83561;83562;83563;83564;83565;83566;83567;83568;83569;83570;83571;83572;83573;83574 50826;50827;50828;50829;50830;50831;50832;50833;50834;50835;50836;50837;50838;50839;50840;50841;50842;50843;50844;50845;50846;50847;50848;50849;50850 50841 23 EFHLDNPSQYFTDYVR Unmodified 2029.917 0.91700524 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 47.026 45.634 2;3 5.0415E-24 22675 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 205.3 176.29 989790000 14373000 18905000 15212000 4741500 5796500 6066200 55229000 66176000 62658000 24693000 16541000 26806000 53023000 47631000 42503000 5973600 4723000 5019200 84524000 77878000 83927000 87955000 91341000 88097000 4464 205 4346 83575;83576;83577;83578;83579;83580;83581;83582;83583;83584;83585;83586;83587;83588;83589;83590;83591;83592;83593;83594;83595;83596;83597;83598;83599;83600;83601;83602;83603;83604;83605;83606;83607;83608;83609;83610;83611 50851;50852;50853;50854;50855;50856;50857;50858;50859;50860;50861;50862;50863;50864;50865;50866;50867;50868;50869;50870;50871;50872;50873;50874 50854 21 EFHLDNPSQYFTDYVRR Unmodified 2186.0181 0.018116265 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 2 1 1 1 1 2 2 2 42.175 40.101 3;4 5.7402E-09 15682 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 85.28 83.887 45046000 0 0 0 1031900 2168700 1097800 0 0 0 1676400 2629800 1970300 0 0 0 0 0 0 0 0 0 10998000 11653000 11820000 4465 205 4347 83612;83613;83614;83615;83616;83617;83618;83619;83620;83621;83622;83623;83624 50875;50876;50877 50876 2 EFIATLVSIKPLPGLHLTTTR Unmodified 2306.3362 0.33620293 1504 P38051 menF Isochorismate synthase MenF yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.616 47.284 4 6.2617E-07 23012 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.772 87.772 147240000 19378000 17098000 14862000 0 0 0 11509000 10354000 10865000 0 0 0 9178600 8005900 8120000 0 0 0 13002000 14480000 10389000 0 0 0 4466 1504 4348 83625;83626;83627;83628;83629;83630;83631;83632;83633;83634;83635;83636 50878;50879;50880;50881;50882;50883 50880 6 EFICIDTGGIDGTEDGVETR Unmodified 2182.9688 0.96884239 268 P0A6P5 der GTPase Der yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 43.934 42.339 2 8.4523E-30 20717 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 210.14 207.19 36029000 7012500 8097400 8895400 0 0 0 3074000 3261200 2109600 0 0 0 0 0 3579200 0 0 0 0 0 0 0 0 0 4467 268 4349 83637;83638;83639;83640;83641;83642;83643 50884 50884 1 EFIDSSQPPLSEVNQEK Unmodified 1945.9269 0.92690122 1897 P77318 ydeN Uncharacterized sulfatase YdeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 35.017 33.752 2 1.9966E-08 15954 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.41 140.52 25437000 10406000 8650900 6380800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4468 1897 4350 83644;83645;83646 50885;50886;50887 50887 2 EFILEHLTK Unmodified 1128.6179 0.61791009 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.739 30.334 3 0.021728 14315 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 45.022 43.135 149140000 28318000 34502000 32163000 727000 0 469400 7876900 7161000 5486700 2033100 902250 1457000 2976800 4035500 3899000 0 561410 476170 4548300 4927900 6000300 617680 0 0 4469 1181 4351 83647;83648;83649;83650;83651;83652;83653;83654;83655;83656;83657;83658;83659;83660;83661;83662;83663;83664;83665;83666 50888;50889;50890;50891;50892;50893 50891 6 EFIQVAEEAEK Unmodified 1291.6296 0.62959699 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.097 27.841 2 7.2922E-06 12714 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.08 144.73 430890000 71018000 54616000 61049000 0 0 0 33355000 40283000 30335000 0 0 0 21973000 23792000 18468000 0 0 0 24562000 28632000 22810000 0 0 0 4470 1211 4352 83667;83668;83669;83670;83671;83672;83673;83674;83675;83676;83677;83678 50894;50895;50896;50897;50898;50899;50900;50901;50902;50903;50904;50905 50902 12 EFIQVAEEAEKDFR Unmodified 1709.8261 0.82606496 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 1 1 1 2 2 2 2 2 2 40.576 38.845 2;3 3.7939E-35 18953 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 265.72 252.3 1590300000 291420000 271840000 239980000 4772600 4395000 5576500 113580000 112400000 14838000 3995200 3744800 0 62372000 73866000 67690000 0 0 0 98106000 115220000 106490000 0 0 0 4471 1211 4353 83679;83680;83681;83682;83683;83684;83685;83686;83687;83688;83689;83690;83691;83692;83693;83694;83695;83696;83697;83698;83699;83700;83701;83702;83703;83704;83705;83706;83707;83708;83709;83710 50906;50907;50908;50909;50910;50911;50912;50913;50914;50915;50916;50917;50918;50919;50920;50921;50922;50923;50924;50925;50926;50927;50928;50929;50930;50931;50932;50933 50923 28 EFLDANLA Unmodified 891.4338 0.43379771 571 P0AA25 trxA Thioredoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 44.998 43.406 2 0.01232 21051 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 75.311 75.311 395980000 40429000 44812000 30494000 0 0 545620 29745000 23717000 28653000 0 845130 621520 33175000 32027000 28174000 0 0 0 35319000 34338000 32423000 662360 0 0 4472 571 4354 83711;83712;83713;83714;83715;83716;83717;83718;83719;83720;83721;83722;83723;83724;83725;83726;83727 50934;50935;50936;50937;50938;50939;50940;50941;50942;50943;50944;50945 50942 12 EFLDEHQK Unmodified 1044.4876 0.4876242 858 P0AEG6 dsbC Thiol:disulfide interchange protein DsbC yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 12.753 13.718 2 0.00040535 4056 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 140.98 130.52 383990000 0 0 0 652930 0 0 0 0 0 0 0 0 0 44245000 44101000 0 0 0 0 132110000 162880000 0 0 0 4473 858 4355 83728;83729;83730;83731;83732 50946;50947;50948 50946 3 EFLDWMPK Unmodified 1064.5001 0.50010314 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.497 47.26 2 0.011989 22740 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 75.854 66.46 763430000 24820000 26344000 22787000 8962000 8187500 9545200 49412000 45698000 47061000 21553000 15562000 16269000 54922000 52370000 48974000 6271300 4993800 5144800 71937000 80105000 77489000 20283000 21918000 22822000 4474 1426 4356 83733;83734;83735;83736;83737;83738;83739;83740;83741;83742;83743;83744;83745;83746;83747;83748;83749;83750;83751;83752;83753;83754;83755;83756 50949;50950;50951;50952;50953;50954;50955;50956;50957;50958;50959;50960;50961;50962;50963;50964;50965;50966;50967;50968;50969 50960 21 EFLENYLLTDEGLEAVNK Unmodified 2096.0314 0.031366293 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 2 2 2 2 3 2 2 2 2 1 1 1 53.16 51.74 2;3 2.1966E-55 24507 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 283.83 276.29 6776500000 115390000 118940000 109220000 2303600 1760100 804700 543230000 585750000 537970000 0 0 0 698280000 715580000 735260000 0 0 0 853980000 853670000 898910000 1673600 1534600 2234100 4475 895 4357 83757;83758;83759;83760;83761;83762;83763;83764;83765;83766;83767;83768;83769;83770;83771;83772;83773;83774;83775;83776;83777;83778;83779;83780;83781;83782;83783;83784;83785;83786;83787;83788;83789 50970;50971;50972;50973;50974;50975;50976;50977;50978;50979;50980;50981;50982;50983;50984;50985;50986;50987;50988;50989;50990;50991;50992;50993 50988 24 EFLENYLLTDEGLEAVNKDKPLGAVALK Unmodified 3088.6332 0.63323239 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 1 2 2 2 2 50.251 48.826 3;4 1.4365E-16 23786 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.33 148.84 498810000 0 4648000 4942000 0 2255200 0 37861000 39513000 40877000 0 0 0 54153000 34164000 47504000 0 0 0 78258000 83458000 71177000 0 0 0 4476 895 4358 83790;83791;83792;83793;83794;83795;83796;83797;83798;83799;83800;83801;83802;83803;83804;83805;83806;83807;83808;83809 50994;50995;50996;50997;50998;50999;51000;51001 50999 8 EFLQSYQSPEVAK Unmodified 1524.746 0.74602373 95 P04846 nlpA Lipoprotein 28 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.758 28.338 2 4.2634E-07 10966 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 117.67 113.37 154930000 19423000 12661000 10344000 2171200 2431900 2896000 12515000 12944000 13558000 0 4962600 4475900 5983400 6349300 5686700 0 0 0 11562000 12425000 14545000 0 0 0 4477 95 4359 83810;83811;83812;83813;83814;83815;83816;83817;83818;83819;83820;83821;83822;83823;83824;83825;83826;83827 51002;51003;51004;51005;51006;51007;51008;51009 51002 8 EFNTAIIMITHDLVVVAGICDK Unmodified 2458.26 0.2600028 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.742 54.325 3 1.4085E-07 20023 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 110.18 109.72 190460000 2108800 0 81058000 15644000 16029000 17930000 0 0 19702000 0 5786100 4386500 0 0 0 0 0 0 19355000 0 0 3340600 2211500 2910200 4478 1807 4360 83828;83829;83830;83831;83832;83833;83834;83835;83836;83837;83838;83839 51010;51011;51012 51010 3 EFNVEANVGK Unmodified 1105.5404 0.54038805 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.36 21.806 2 0.00046403 9404 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 118.5 107.62 1154100000 102080000 88287000 82994000 0 0 0 88585000 81353000 82233000 0 0 0 92350000 90232000 83934000 0 0 0 116980000 126170000 118910000 0 0 0 4479 264 4361 83840;83841;83842;83843;83844;83845;83846;83847;83848;83849;83850;83851 51013;51014;51015;51016;51017;51018;51019;51020;51021;51022;51023;51024 51015 12 EFNVEANVGKPQVAYR Unmodified 1819.9217 0.92169668 264 P0A6M8 fusA Elongation factor G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 27.057 25.868 2;3 2.2302E-103 11207 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 375.33 365.49 32567000000 3144200000 3063700000 2528700000 28611000 29029000 30625000 2387900000 2344700000 2249000000 31198000 25450000 25823000 2375800000 2136400000 2164600000 13284000 11719000 10892000 3416700000 3146100000 3346400000 18930000 14260000 22591000 4480 264 4362 83852;83853;83854;83855;83856;83857;83858;83859;83860;83861;83862;83863;83864;83865;83866;83867;83868;83869;83870;83871;83872;83873;83874;83875;83876;83877;83878;83879;83880;83881;83882;83883;83884;83885;83886;83887;83888;83889;83890;83891;83892;83893;83894;83895;83896;83897;83898 51025;51026;51027;51028;51029;51030;51031;51032;51033;51034;51035;51036;51037;51038;51039;51040;51041;51042;51043;51044;51045;51046;51047;51048;51049;51050;51051;51052;51053;51054;51055;51056;51057;51058;51059;51060;51061;51062;51063;51064;51065;51066;51067;51068;51069;51070;51071;51072 51070 48 EFPAGSYLWSQDGEIR Unmodified 1853.8584 0.85842773 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.048 45.556 2 1.2348E-14 22097 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.86 156.16 285290000 28476000 28166000 26849000 0 0 0 50005000 64199000 53953000 1400200 0 1708500 3768900 4998600 3126300 0 0 0 7233700 6545000 4857400 0 0 0 4481 1191 4363 83899;83900;83901;83902;83903;83904;83905;83906;83907;83908;83909;83910;83911;83912 51073;51074;51075;51076;51077;51078;51079;51080;51081;51082 51079 1 EFPCPIPK Unmodified 986.48954 0.48953845 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 28.117 26.985 2 0.11579 12409 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 45.882 45.882 151620000 33840000 34747000 30196000 0 0 0 0 0 5870800 0 0 0 5931200 6117300 6404400 0 0 0 9338300 9886500 9288400 0 0 0 4482 173 4364 83913;83914;83915;83916;83917;83918;83919;83920;83921;83922 51083;51084 51083 2 EFPLPTYATSGSAGLDLR Unmodified 1893.9472 0.94724273 135 P06968 dut Deoxyuridine 5'-triphosphate nucleotidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.109 47.746 2 3.3603E-18 22268 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 198.14 191.5 951250000 68384000 54674000 64393000 0 0 0 88500000 82202000 81253000 0 0 0 83985000 71087000 70615000 0 0 0 90418000 94177000 101560000 0 0 0 4483 135 4365 83923;83924;83925;83926;83927;83928;83929;83930;83931;83932;83933;83934 51085;51086;51087;51088;51089;51090;51091;51092;51093;51094;51095;51096 51096 12 EFQHVDK Unmodified 901.42938 0.42938104 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 2 2 10.608 11.316 2 0.019233 2642 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 77.923 61.769 105740000 34255000 41679000 29804000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4484 49 4366 83935;83936;83937;83938;83939 51097;51098;51099 51099 3 EFQQLDFSSLHLSAGGGMPVQQVVAER Unmodified 2929.4392 0.4392408 1734 P69451 fadD Long-chain-fatty-acid--CoA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 50.289 48.92 3 1.9234E-11 23973 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.04 125.49 117210000 24525000 19366000 17178000 0 0 0 0 7143900 0 0 0 0 9366200 0 6091000 0 0 0 10794000 12125000 10625000 0 0 0 4485 1734 4367 83940;83941;83942;83943;83944;83945;83946;83947;83948 51100;51101 51101 1 EFRPGIETTER Unmodified 1333.6626 0.66262845 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 16.855 17.352 2;3 2.0752E-14 6152 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 256.38 230.82 15602000000 315610000 299140000 290980000 0 0 0 2028900000 1972800000 2085600000 14003000 9691900 5277600 1531000000 1380400000 1310200000 10628000 6948500 6017000 1446700000 1462100000 1424500000 0 1694100 0 4486 239 4368 83949;83950;83951;83952;83953;83954;83955;83956;83957;83958;83959;83960;83961;83962;83963;83964;83965;83966;83967;83968;83969;83970;83971;83972;83973;83974;83975;83976;83977;83978;83979;83980;83981;83982;83983 51102;51103;51104;51105;51106;51107;51108;51109;51110;51111;51112;51113;51114;51115;51116;51117;51118;51119;51120;51121;51122;51123;51124;51125;51126;51127;51128 51113 27 EFSEIVSLLQPVAGAHPAIAHFLQQPDAER Unmodified 3269.6833 0.6833109 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 53.937 52.502 3;4 5.5597E-42 24741 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 217.84 215.44 2456500000 199700000 207740000 210330000 0 0 0 265410000 249130000 222410000 0 0 0 194260000 201960000 187520000 0 0 0 157160000 172610000 180580000 0 0 7663000 4487 56 4369 83984;83985;83986;83987;83988;83989;83990;83991;83992;83993;83994;83995;83996;83997;83998;83999;84000;84001;84002;84003;84004;84005;84006;84007;84008 51129;51130;51131;51132;51133;51134;51135;51136;51137;51138;51139;51140;51141;51142;51143;51144;51145;51146;51147;51148 51146 20 EFSHNVVLAN Unmodified 1128.5564 0.55637247 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.917 23.009 2 3.1432E-05 9947 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 144.38 142.77 5560100000 1792000000 1755600000 1546900000 4088000 4774700 5268600 11110000 8298000 8833300 0 0 0 34112000 30333000 33305000 0 0 0 100270000 112260000 112850000 0 0 0 4488 339 4370 84009;84010;84011;84012;84013;84014;84015;84016;84017;84018;84019;84020;84021;84022;84023 51149;51150;51151;51152;51153;51154;51155;51156;51157 51156 9 EFSIDVLEEMLEK Unmodified 1580.7644 0.76437591 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.463 54.198 2 8.8232E-07 26608 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 164.64 157.98 3856200000 148550000 143600000 154700000 7540500 5177500 5584000 41968000 37567000 44509000 7327800 6506100 6245400 72523000 106130000 68060000 716800000 1047100000 867000000 118440000 105210000 119260000 8318100 7944000 10091000 4489 729 4371 84024;84025;84026;84027;84028;84029;84030;84031;84032;84033;84034;84035;84036;84037;84038;84039;84040;84041;84042;84043;84044;84045;84046;84047 51158;51159;51160;51161;51162;51163;51164;51165;51166;51167;51168 51164 11 EFTANVSGNDLVR Unmodified 1420.6947 0.69465686 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 29.903 28.351 2 3.1098E-12 12706 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 185.08 180.47 558490000 0 0 0 0 0 0 74416000 71910000 76095000 1998600 0 1230700 60638000 59750000 56736000 0 0 0 49169000 51955000 54594000 0 0 0 4490 1467 4372 84048;84049;84050;84051;84052;84053;84054;84055;84056;84057;84058 51169;51170;51171;51172;51173 51172 5 EFTFNGIR Unmodified 982.48723 0.48723027 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.975 31.264 2 0.0012251 12118 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 110.63 81.295 123920000 0 6580800 0 0 0 0 11614000 9683900 10808000 6317700 7333000 7530700 6841800 5777600 0 0 0 0 12780000 10229000 12097000 5205500 5435200 5682000 4491 844 4373 84059;84060;84061;84062;84063;84064;84065;84066;84067;84068;84069;84070;84071;84072;84073 51174;51175 51175 2 EFVESLETPR Unmodified 1205.5928 0.59281755 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 2 2 1 1 2 2 2 1 29.742 28.369 2;3 1.4588E-05 12536 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 151.97 142.76 12810000000 677950000 598100000 568060000 0 0 0 1196500000 1225100000 1196000000 0 0 0 1122500000 1021500000 977880000 0 0 0 1422300000 1412300000 1390600000 0 0 1148100 4492 24 4374 84074;84075;84076;84077;84078;84079;84080;84081;84082;84083;84084;84085;84086;84087;84088;84089;84090;84091;84092;84093;84094 51176;51177;51178;51179;51180;51181;51182;51183;51184;51185;51186;51187;51188;51189;51190 51189 12 EFVESLETPRR Unmodified 1361.6939 0.69392858 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.444 21.858 3 0.10422 9216 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 32.999 19.32 106850000 0 0 0 0 0 3409100 13223000 12899000 13138000 3815800 3848400 0 0 0 0 1485300 1202300 855790 15492000 19159000 18325000 0 0 0 4493 24 4375 84095;84096;84097;84098;84099;84100;84101;84102;84103;84104;84105;84106 51191;51192 51191 1 EFVFTIADK Unmodified 1068.5492 0.54916182 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 40.532 38.884 2 0.00033848 15321 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 114.5 106.83 5629500000 399020000 347440000 368470000 17351000 19973000 17757000 665820000 642250000 683420000 48264000 44382000 44017000 370900000 393540000 356410000 20695000 12849000 14091000 362030000 376860000 356280000 21128000 24518000 22023000 4494 1046 4376 84107;84108;84109;84110;84111;84112;84113;84114;84115;84116;84117;84118;84119;84120;84121;84122;84123;84124;84125;84126;84127;84128;84129;84130;84131;84132;84133;84134 51193;51194;51195;51196;51197;51198;51199;51200;51201;51202;51203;51204;51205;51206;51207;51208;51209;51210;51211;51212;51213;51214;51215;51216;51217;51218;51219;51220;51221 51197 26 EFVSSLATR Unmodified 1008.524 0.52400971 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.378 23.481 2 4.2164E-05 9796 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 151.04 132.23 1017200000 67944000 60932000 67246000 0 0 0 92414000 68515000 79942000 0 0 0 98082000 85118000 86575000 0 0 0 106150000 105270000 99001000 0 0 0 4495 558 4377 84135;84136;84137;84138;84139;84140;84141;84142;84143;84144;84145;84146 51222;51223;51224;51225;51226;51227;51228;51229;51230;51231 51231 10 EFVYSNLR Unmodified 1026.5134 0.51344502 606 P0AAQ2 yajD Uncharacterized protein YajD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.839 25.692 2 7.1553E-05 11854 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.78 134.17 222500000 16507000 16014000 14277000 0 0 0 22862000 26710000 25973000 0 0 0 13319000 14428000 17017000 0 0 0 18533000 19011000 17851000 0 0 0 4496 606 4378 84147;84148;84149;84150;84151;84152;84153;84154;84155;84156;84157;84158 51232;51233;51234;51235;51236;51237;51238;51239;51240 51234 9 EFWGWWMELEAQESR Unmodified 1982.8621 0.8621329 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 1 2 2 2 2 2 1 1 55.379 54.364 2;3 2.2131E-35 20784 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 308.55 308.55 987170000 4888900 0 2928500 0 0 0 19973000 17938000 0 0 0 0 37180000 25071000 30144000 236070000 301230000 241900000 25769000 21411000 22668000 0 0 0 4497 1247 4379 84159;84160;84161;84162;84163;84164;84165;84166;84167;84168;84169;84170;84171;84172;84173;84174;84175;84176;84177;84178 51241;51242;51243;51244;51245;51246;51247;51248 51243 7 EFWGWWMELEAQESR Oxidation (M) 1998.857 0.85704752 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 1 0 By matching By matching By MS/MS 1 1 1 54.933 54.989 2 6.3928E-07 20783 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 127.17 125.73 39881000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13399000 13792000 12690000 0 0 0 0 0 0 4498 1247 4379 84179;84180;84181 51249 51249 517 1 EFWLQTDYYK Unmodified 1391.6398 0.63976774 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.779 43.007 2 0.00020435 20991 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.87 116.57 121360000 0 0 0 1285200 0 2077800 8777100 8944300 8214800 7024200 4847600 4952500 9830100 9192200 7495500 0 0 0 12303000 12840000 14776000 4115900 0 4685500 4499 975 4380 84182;84183;84184;84185;84186;84187;84188;84189;84190;84191;84192;84193;84194;84195;84196;84197 51250;51251;51252;51253;51254;51255;51256;51257 51255 8 EFWNVVNWDEAAAR Unmodified 1705.7849 0.78486885 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 3 2 51.769 50.522 2;3 8.2077E-28 24844 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 247.96 238.52 7589300000 914960000 933680000 884310000 3228900 3471700 3034800 393970000 350930000 351830000 0 0 0 451170000 435040000 405710000 0 0 0 841140000 841050000 775770000 0 0 0 4500 28 4381 84198;84199;84200;84201;84202;84203;84204;84205;84206;84207;84208;84209;84210;84211;84212;84213;84214;84215;84216;84217;84218;84219;84220;84221;84222;84223;84224;84225 51258;51259;51260;51261;51262;51263;51264;51265;51266;51267;51268;51269;51270;51271;51272;51273;51274;51275;51276;51277;51278;51279;51280;51281 51260 24 EFYEKPTTER Unmodified 1298.6143 0.61428128 1721 P68679 rpsU 30S ribosomal protein S21 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 13.126 13.732 2;3 2.8098E-05 3885 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 162.97 144.75 6834100000 1042900000 1022200000 958980000 16860000 13014000 16821000 228410000 267260000 273990000 54265000 44655000 50072000 447100000 342000000 333110000 21841000 11608000 14931000 602390000 567500000 415470000 31364000 29069000 28292000 4501 1721 4382 84226;84227;84228;84229;84230;84231;84232;84233;84234;84235;84236;84237;84238;84239;84240;84241;84242;84243;84244;84245;84246;84247;84248;84249;84250;84251;84252;84253;84254;84255;84256;84257;84258;84259;84260;84261;84262;84263;84264;84265;84266;84267;84268;84269;84270;84271;84272;84273 51282;51283;51284;51285;51286;51287;51288;51289;51290;51291;51292;51293;51294;51295;51296;51297;51298;51299;51300;51301;51302;51303;51304;51305;51306;51307;51308;51309;51310;51311;51312;51313;51314;51315;51316;51317;51318;51319;51320;51321;51322 51318 39 EGADTLITAGAIQSNHVR Unmodified 1851.9439 0.94388869 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 1 2 1 2 2 1 27.906 26.732 2;3 1.7048E-36 12239 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 234.41 228.18 726210000 131850000 124870000 105810000 1094000 937620 850660 45732000 51843000 44767000 0 0 0 29462000 29085000 25825000 0 0 0 43248000 48643000 42199000 0 0 0 4502 1850 4383 84274;84275;84276;84277;84278;84279;84280;84281;84282;84283;84284;84285;84286;84287;84288;84289;84290;84291;84292;84293;84294;84295;84296 51323;51324;51325;51326;51327;51328;51329;51330;51331;51332;51333;51334;51335;51336;51337 51330 13 EGADVAISYLPVEEEDAQDVK Unmodified 2276.0696 0.069602293 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 45.026 43.43 2 2.5062E-22 21189 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 236.4 235.8 168620000 42629000 34295000 40473000 0 0 0 15921000 18085000 17213000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4503 995 4384 84297;84298;84299;84300;84301;84302 51338;51339;51340 51339 3 EGADVAISYLPVEEEDAQDVKK Unmodified 2404.1646 0.16456531 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.905 36.231 3 9.2129E-07 17948 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 99.603 96.954 639870000 139590000 129720000 130410000 0 0 0 61900000 63806000 64342000 0 0 0 3902600 4550400 5814000 0 0 0 10872000 13712000 11253000 0 0 0 4504 995 4385 84303;84304;84305;84306;84307;84308;84309;84310;84311;84312;84313;84314 51341;51342;51343;51344;51345;51346 51341 6 EGADVLTGGR Unmodified 973.48287 0.48287317 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 17.719 18.402 2 2.2802E-05 6759 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 148.27 116.96 805280000 218920000 224070000 170790000 3056800 3182200 0 84925000 0 73556000 0 0 0 0 0 5545700 0 0 0 10942000 10300000 0 0 0 0 4505 1486 4386 84315;84316;84317;84318;84319;84320;84321;84322;84323;84324 51347;51348;51349;51350;51351 51349 4 EGAELAFTYQNDK Unmodified 1484.6783 0.6783381 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 2 1 31.519 30.058 2 9.3334E-33 13609 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 228.64 224.1 675190000 0 0 90585000 0 0 0 97564000 69253000 69384000 0 0 0 71674000 61773000 57087000 0 0 0 4374000 86205000 67291000 0 0 0 4506 869 4387 84325;84326;84327;84328;84329;84330;84331;84332;84333;84334;84335;84336;84337;84338 51352;51353;51354;51355;51356;51357;51358;51359;51360;51361;51362;51363;51364;51365;51366;51367;51368;51369;51370;51371;51372 51364 20 EGAFTDPDSYFHNYAK Unmodified 1860.7955 0.79549312 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 36.75 35.054 2 0.0076253 16849 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 57.802 46.219 33807000 0 0 3771200 0 0 0 0 5318900 3076600 0 0 0 0 5014100 0 0 0 0 4319200 6966700 5340700 0 0 0 4507 248 4388 84339;84340;84341;84342;84343;84344;84345 51373 51373 1 EGAIVIDVGINR Unmodified 1254.6932 0.6932003 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 38.925 37.283 2 0.001547 18304 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 70.028 52.797 72653000 10735000 9948100 6602100 0 0 0 0 4707100 3018100 0 0 0 5958400 0 5741200 0 0 0 7241200 9731400 8970400 0 0 0 4508 1237 4389 84346;84347;84348;84349;84350;84351;84352;84353;84354;84355 51374 51374 1 EGANVSIIENGK Unmodified 1229.6252 0.62518031 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 21.53 21.492 2 0.015102 6857 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 59.067 50.109 22447000 0 0 0 793620 1147500 1123400 0 0 2394600 1541200 0 0 0 0 0 0 0 0 5803100 0 4733600 1794600 1813900 1302000 4509 806 4390 84356;84357;84358;84359;84360;84361;84362;84363;84364;84365 51375 51375 1 EGAPADLEEYCFIHCHGELK Unmodified 2374.0358 0.035816519 115 P05706 srlB Glucitol/sorbitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.998 31.309 3 0.0077558 14294 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 57.496 57.459 140380000 0 0 0 0 0 0 22773000 21213000 18717000 2119800 1757000 2685100 13444000 8345800 9492500 0 0 0 10682000 13731000 15418000 0 0 0 4510 115 4391 84366;84367;84368;84369;84370;84371;84372;84373;84374;84375;84376;84377 51376;51377;51378;51379 51378 0 EGATTLLWFEHPAER Unmodified 1755.858 0.8580338 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 1 2 2 2 2 2 2 41.193 39.416 2;3 1.7271E-15 19152 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 198.4 192.16 3028100000 403140000 353200000 327600000 4211500 2985700 0 239490000 212340000 215810000 7698700 0 3277600 173160000 168460000 156580000 0 0 0 245560000 255920000 258710000 0 0 0 4511 784 4392 84378;84379;84380;84381;84382;84383;84384;84385;84386;84387;84388;84389;84390;84391;84392;84393;84394;84395;84396;84397;84398;84399;84400;84401;84402;84403;84404;84405;84406 51380;51381;51382;51383;51384;51385;51386;51387;51388;51389;51390;51391;51392;51393;51394;51395;51396;51397;51398;51399;51400;51401;51402 51389 22 EGATVAIPNDPTNLGR Unmodified 1623.8216 0.82164829 95 P04846 nlpA Lipoprotein 28 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.97 31.377 2 4.226E-14 14816 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 176.8 167.48 185180000 16110000 15114000 14437000 4185600 3924400 4487300 17223000 12893000 13154000 8880200 0 0 4986900 7522500 6373900 0 0 0 17559000 16343000 15793000 3072900 0 3114800 4512 95 4393 84407;84408;84409;84410;84411;84412;84413;84414;84415;84416;84417;84418;84419;84420;84421;84422;84423;84424 51403;51404;51405;51406;51407;51408;51409;51410;51411;51412;51413;51414;51415 51412 13 EGATVCGVR Unmodified 947.44946 0.44946455 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.415 13.004 2 0.00040861 3120 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 111.01 92.277 567500000 0 0 0 0 0 0 109440000 94641000 89304000 6624700 6643300 6604900 61368000 42438000 55911000 0 2065300 1766900 23817000 33429000 30141000 0 3302300 0 4513 506 4394 84425;84426;84427;84428;84429;84430;84431;84432;84433;84434;84435;84436;84437;84438;84439 51416 51416 1 EGATVTGLDMGFEPLQVAK Unmodified 1961.9768 0.9768283 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 50.339 48.93 2;3 1.1781E-36 23681 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 231.22 225.74 721120000 59114000 56248000 41344000 8770600 10246000 11466000 58600000 50940000 57003000 7326100 6924200 6946100 48102000 44823000 46410000 0 0 0 66797000 66307000 64425000 0 4770900 4562000 4514 1146 4395 84440;84441;84442;84443;84444;84445;84446;84447;84448;84449;84450;84451;84452;84453;84454;84455;84456;84457;84458;84459;84460;84461;84462;84463;84464;84465;84466;84467;84468;84469;84470;84471;84472;84473;84474 51417;51418;51419;51420;51421;51422;51423;51424;51425;51426;51427;51428;51429;51430;51431;51432;51433;51434;51435;51436;51437 51427 21 EGCSLEDAVENIDIGGPTMVR Unmodified 2261.0304 0.03039679 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 50.501 49.123 2;3 2.2984E-63 23909 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 370.69 370.69 1011800000 276010000 285440000 256540000 0 0 0 0 6874000 11926000 0 0 0 29138000 23381000 24072000 0 0 0 32872000 28253000 37300000 0 0 0 4515 1111 4396 84475;84476;84477;84478;84479;84480;84481;84482;84483;84484;84485;84486;84487;84488;84489;84490;84491;84492;84493;84494;84495 51438;51439;51440;51441;51442;51443;51444;51445;51446;51447;51448;51449 51449 9 EGDAMAK Unmodified 720.31124 0.31123974 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.6822 6.5481 2 0.011149 1331 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.086 41.476 315380000 23278000 25518000 25518000 0 0 0 17614000 19812000 20396000 0 0 0 24442000 22732000 21566000 0 0 0 38225000 37062000 39215000 0 0 0 4516 698 4397 84496;84497;84498;84499;84500;84501;84502;84503;84504;84505;84506;84507 51450;51451;51452;51453;51454;51455;51456 51452 7 EGDAVQLVGFGTFK Unmodified 1466.7405 0.74054442 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 3 3 3 2 2 2 2 3 3 2 2 2 3 2 3 2 2 2 46.796 45.4 2;3 5.2039E-11 22193 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 218.43 212.19 28170000000 1901400000 2041300000 1746200000 13626000 13286000 0 2787200000 2594000000 2601500000 140440000 124710000 131300000 2172600000 1767000000 2040600000 302860000 249990000 287100000 2359100000 2398100000 2240400000 82655000 84959000 90154000 4517 726 4398 84508;84509;84510;84511;84512;84513;84514;84515;84516;84517;84518;84519;84520;84521;84522;84523;84524;84525;84526;84527;84528;84529;84530;84531;84532;84533;84534;84535;84536;84537;84538;84539;84540;84541;84542;84543;84544;84545;84546;84547;84548;84549;84550;84551;84552;84553;84554;84555;84556;84557;84558;84559 51457;51458;51459;51460;51461;51462;51463;51464;51465;51466;51467;51468;51469;51470;51471;51472;51473;51474;51475;51476;51477;51478;51479;51480;51481;51482;51483;51484;51485;51486;51487;51488;51489;51490;51491;51492;51493;51494;51495;51496;51497;51498;51499;51500;51501;51502;51503;51504;51505;51506;51507;51508;51509;51510;51511;51512;51513 51472 52 EGDDVALVGFGTFAVK Unmodified 1623.8144 0.81443765 727 P0ACF4 hupB DNA-binding protein HU-beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 1 1 1 51.8 50.657 2;3 2.52E-18 24655 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.46 177.14 2193900000 224240000 221480000 188450000 1960500 1607700 0 173010000 140370000 138550000 10957000 9895800 8763900 178790000 159150000 154780000 22498000 27183000 15929000 153820000 158310000 190390000 5006900 4799500 3889300 4518 727 4399 84560;84561;84562;84563;84564;84565;84566;84567;84568;84569;84570;84571;84572;84573;84574;84575;84576;84577;84578;84579;84580;84581;84582;84583;84584;84585;84586;84587;84588;84589;84590;84591;84592;84593;84594;84595 51514;51515;51516;51517;51518;51519;51520;51521;51522;51523;51524;51525;51526;51527;51528;51529;51530;51531;51532;51533;51534;51535;51536;51537;51538;51539;51540;51541;51542;51543;51544;51545 51526 30 EGDIQTAQK Unmodified 988.48254 0.48253882 259 P0A6L4 nanA N-acetylneuraminate lyase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 10.612 11.396 2 0.00034096 2721 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.28 98.842 137980000 35673000 29788000 29475000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16691000 13828000 12529000 0 0 0 4519 259 4400 84596;84597;84598;84599;84600;84601 51546 51546 1 EGDNYVVLSDILGDEDHLGDMDFK Unmodified 2695.1959 0.19594179 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.453 53.019 3 2.4813E-15 26176 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.25 145.7 2444100000 150070000 180420000 153090000 13544000 14081000 17422000 148350000 117490000 115430000 12889000 8706500 9258200 262200000 243040000 228740000 0 0 0 248370000 237490000 258970000 7065000 8740500 8773000 4520 107 4401 84602;84603;84604;84605;84606;84607;84608;84609;84610;84611;84612;84613;84614;84615;84616;84617;84618;84619;84620;84621;84622 51547;51548;51549;51550;51551;51552;51553;51554;51555;51556;51557;51558;51559;51560;51561 51549 15 EGDPNDFADIPTLLSGLVAK Unmodified 2071.0474 0.047350708 1614 P56262 ysgA Putative carboxymethylenebutenolidase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.739 54.279 2 1.1645E-07 26925 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.82 140.51 242560000 52024000 56213000 60069000 504090 0 0 13803000 8682100 13812000 0 0 0 4560300 5887800 4617600 0 0 0 6564500 6655000 9166000 0 0 0 4521 1614 4402 84623;84624;84625;84626;84627;84628;84629;84630;84631;84632;84633;84634;84635 51562 51562 1 EGDPNLGVIAETLTEHGTR Unmodified 2007.9861 0.98614743 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 2 1 1 1 1 1 1 1 43.764 42.183 2;3 1.6989E-17 21021 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.54 156.78 995320000 87773000 91952000 82875000 0 0 0 89061000 90823000 79513000 0 0 0 85092000 73885000 70875000 0 0 0 77085000 85834000 80556000 0 0 0 4522 90 4403 84636;84637;84638;84639;84640;84641;84642;84643;84644;84645;84646;84647;84648;84649 51563;51564;51565;51566;51567;51568;51569;51570;51571 51564 9 EGDSTILFR Unmodified 1036.5189 0.51892433 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 30.549 28.963 2 0.0064395 13024 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 70.919 52.883 175150000 0 0 0 0 0 0 17558000 17448000 15295000 2542200 3429800 2927100 16119000 13016000 0 0 0 1402600 27082000 30026000 26690000 0 0 1610700 4523 1781 4404 84650;84651;84652;84653;84654;84655;84656;84657;84658;84659;84660;84661;84662 51572;51573;51574 51574 3 EGDVIAWIGEHEIK Unmodified 1594.7991 0.79912193 1953 Q46808 yqeB Uncharacterized protein YqeB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 43.258 41.601 3 0.014243 16370 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 42.798 42.534 22765000 0 0 0 0 0 0 0 0 0 0 0 0 1286500 0 1760100 0 0 0 0 0 1976200 5683300 5779500 6279800 4524 1953 4405 84663;84664;84665;84666;84667;84668 51575;51576;51577 51577 3 EGDVLLGISTSGNSANVIK Unmodified 1872.9793 0.97927114 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.392 39.71 2 2.7703E-29 19662 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 212.1 184.95 1270100000 134550000 119180000 120460000 1653400 1750200 1958800 113280000 106790000 110670000 0 0 0 90528000 87037000 81945000 0 0 0 94446000 104380000 101480000 0 0 0 4525 1658 4406 84669;84670;84671;84672;84673;84674;84675;84676;84677;84678;84679;84680;84681;84682;84683 51578;51579;51580;51581;51582;51583;51584;51585;51586;51587;51588 51579 11 EGDVLVTLDPTDAR Unmodified 1499.7468 0.74675201 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 40.1 38.099 2 0.00066595 18618 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.397 76.508 46536000 0 0 0 0 1218300 0 8871600 3691200 0 5058100 0 3258600 7851600 0 6629200 0 0 0 7140300 0 0 0 1381700 1435600 4526 1300 4407 84684;84685;84686;84687;84688;84689;84690;84691;84692;84693 51589 51589 1 EGDWAVAEMR Unmodified 1162.5077 0.50770771 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.021 29.623 2 5.8989E-05 13804 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.26 130.51 629950000 65784000 72181000 69357000 0 0 387110 42534000 39824000 42121000 0 0 0 37399000 35459000 34562000 0 0 0 65872000 66615000 57148000 0 709670 0 4527 1348 4408 84694;84695;84696;84697;84698;84699;84700;84701;84702;84703;84704;84705;84706;84707 51590;51591;51592;51593;51594;51595;51596;51597;51598;51599;51600;51601 51597 12 EGEAIAWHLR Unmodified 1180.5989 0.59890598 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 26.583 25.544 2;3 0.001423 11547 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 88.948 57.013 881100000 57464000 48851000 53224000 0 0 0 78542000 72108000 69116000 2145400 1863200 2170400 70459000 65780000 69102000 4207300 2295900 3058500 103830000 94149000 82738000 0 0 0 4528 124 4409 84708;84709;84710;84711;84712;84713;84714;84715;84716;84717;84718;84719;84720;84721;84722;84723;84724;84725;84726;84727;84728;84729;84730;84731;84732;84733;84734;84735;84736;84737;84738 51602;51603;51604;51605;51606;51607;51608;51609;51610;51611;51612;51613;51614;51615;51616;51617;51618;51619;51620;51621 51612 11 EGEATLAPSLDLVGK Unmodified 1498.7879 0.78788854 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 3 2 2 1 1 1 41.729 39.992 2;3 1.859E-11 18845 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 166.14 155.62 32696000000 3186500000 3079500000 2971000000 2591100 2240400 2722500 2731300000 2752700000 2642300000 0 0 0 2228200000 2301600000 2216800000 0 0 0 2721000000 2994800000 2857400000 1923100 1807300 1266400 4529 827 4410 84739;84740;84741;84742;84743;84744;84745;84746;84747;84748;84749;84750;84751;84752;84753;84754;84755;84756;84757;84758;84759;84760;84761;84762;84763;84764;84765;84766;84767;84768;84769 51622;51623;51624;51625;51626;51627;51628;51629;51630;51631;51632;51633;51634;51635;51636;51637;51638;51639;51640;51641;51642;51643;51644;51645 51639 24 EGEATLAPSLDLVGKI Unmodified 1611.872 0.87195252 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.116 50.047 2 8.2068E-07 24624 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 140.14 138.78 1617800000 161520000 131620000 153770000 0 0 0 155520000 146990000 126950000 0 0 0 85135000 92358000 84520000 1384600 0 4965200 160750000 156020000 156320000 0 0 0 4530 827 4411 84770;84771;84772;84773;84774;84775;84776;84777;84778;84779;84780;84781;84782;84783 51646;51647;51648;51649;51650;51651;51652;51653;51654 51647 8 EGEDEFLDDWR Unmodified 1409.5735 0.57353867 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.795 42.055 2 1.9897E-07 20803 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.07 163.39 1740300000 151460000 137490000 135970000 3403700 3950900 4180400 155970000 149840000 143030000 3841100 3066000 3035700 138410000 116370000 105480000 0 0 0 166730000 167630000 143510000 2563900 1811400 2559200 4531 295 4412 84784;84785;84786;84787;84788;84789;84790;84791;84792;84793;84794;84795;84796;84797;84798;84799;84800;84801;84802;84803;84804 51655;51656;51657;51658;51659;51660;51661;51662;51663;51664;51665;51666;51667;51668;51669;51670 51659 13 EGEIDIAK Unmodified 873.44436 0.4443624 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.17 17.608 2 0.0019937 6375 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 104.21 68.576 6761800000 78038000 78495000 71353000 0 0 0 71933000 125310000 154690000 12768000 9979200 10532000 85864000 94132000 75703000 2159300000 1625500000 1682700000 133360000 130670000 136400000 8996600 8865000 7282700 4532 36 4413 84805;84806;84807;84808;84809;84810;84811;84812;84813;84814;84815;84816;84817;84818;84819;84820;84821;84822;84823;84824;84825 51671;51672;51673;51674;51675;51676;51677;51678;51679;51680;51681;51682;51683;51684;51685;51686;51687;51688 51679 18 EGEIDIAKR Unmodified 1029.5455 0.54547343 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.74 14.236 2 3.3571E-05 3524 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 155 124.36 939090000 38504000 0 30874000 635280 2112100 0 42340000 34362000 35689000 3089900 2677000 2527800 0 0 0 400380000 151490000 128450000 17483000 16890000 18586000 4853200 4437200 3707500 4533 36 4414 84826;84827;84828;84829;84830;84831;84832;84833;84834;84835;84836;84837;84838;84839;84840;84841;84842;84843;84844 51689;51690;51691 51689 1 EGENVVGSETR Unmodified 1175.5418 0.54184461 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.632 13.247 2 1.0421E-07 3123 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 172.88 158.88 2506700000 166030000 157440000 170560000 26158000 27758000 19853000 171030000 147870000 164110000 186900000 154640000 143610000 114670000 89622000 109910000 35266000 27881000 27286000 139260000 131900000 140230000 51291000 52154000 51297000 4534 343 4415 84845;84846;84847;84848;84849;84850;84851;84852;84853;84854;84855;84856;84857;84858;84859;84860;84861;84862;84863;84864;84865;84866;84867;84868 51692;51693;51694;51695 51692 4 EGEPMGVIIQK Unmodified 1199.622 0.62200919 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.485 27.246 2 0.00019164 12982 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.57 102.16 749440000 51509000 52668000 53147000 0 0 0 66058000 62788000 63839000 0 0 0 1987900 75136000 68693000 0 0 0 85291000 86239000 82084000 0 0 0 4535 1073 4416 84869;84870;84871;84872;84873;84874;84875;84876;84877;84878;84879;84880 51696;51697;51698;51699;51700;51701;51702;51703;51704 51696 6 EGEPSWPSPWGAGR Unmodified 1511.6793 0.67934115 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.114 39.448 2 8.704E-08 19197 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.84 132.9 422110000 35703000 35259000 27731000 0 0 0 35883000 32391000 31762000 0 0 0 33833000 30377000 32803000 0 0 0 39891000 43657000 42823000 0 0 0 4536 1188 4417 84881;84882;84883;84884;84885;84886;84887;84888;84889;84890;84891;84892 51705;51706;51707;51708;51709;51710;51711;51712;51713;51714;51715 51709 10 EGETLVLLDGTEAK Unmodified 1473.7563 0.75625407 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.579 36.905 2 2.6518E-07 17884 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.22 155.13 2662600000 224130000 201500000 190380000 0 0 0 172070000 170490000 160260000 0 0 0 219990000 228670000 203780000 0 0 0 319930000 304880000 266500000 0 0 0 4537 161 4418 84893;84894;84895;84896;84897;84898;84899;84900;84901;84902;84903;84904 51716;51717;51718;51719;51720;51721;51722 51718 7 EGETLVVAAATGPVGATVGQIGK Unmodified 2124.1426 0.14264808 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 1 1 2 2 1 46.994 45.582 2;3 2.2839E-53 22472 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 261.17 236.16 317610000 62608000 53145000 50372000 0 0 0 34763000 36133000 32509000 0 0 0 12036000 3303200 3287000 0 0 0 12623000 12742000 4089800 0 0 0 4538 1817 4419 84905;84906;84907;84908;84909;84910;84911;84912;84913;84914;84915;84916;84917;84918;84919;84920;84921;84922;84923;84924;84925 51723;51724;51725;51726;51727;51728;51729;51730;51731;51732;51733;51734;51735;51736 51726 14 EGFDSLPESSEQEDDMLDK Unmodified 2169.8896 0.88958902 550 P0A9R4 fdx 2Fe-2S ferredoxin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.607 37.933 2 1.9045E-23 18456 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 201.48 201.48 773270000 49390000 47693000 43508000 0 0 0 66522000 60739000 50681000 0 0 0 75642000 65167000 74806000 0 0 0 80359000 78128000 80631000 0 0 0 4539 550 4420 84926;84927;84928;84929;84930;84931;84932;84933;84934;84935;84936;84937 51737;51738;51739;51740;51741;51742;51743;51744;51745;51746;51747 51743 11 EGFDVSK Unmodified 780.36538 0.3653838 476 P0A901 blc Outer membrane lipoprotein Blc yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.328 15.946 2 0.12482 3997 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 49.358 27.656 100860000 5447500 4153500 3373200 2649100 2433500 1834000 18557000 21379000 20772000 4818800 0 2857500 0 0 0 0 0 0 6744000 3783700 0 1072900 984540 0 4540 476 4421 84938;84939;84940;84941;84942;84943;84944;84945;84946;84947;84948;84949;84950;84951;84952 51748 51748 1 EGFELAVSR Unmodified 1006.5084 0.50835964 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 30.761 29.253 2 0.00011959 12973 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 133.58 70.923 466050000 0 0 0 0 0 0 68032000 72050000 73585000 0 0 0 75995000 87754000 82980000 0 0 0 0 0 0 0 0 5657600 4541 1388 4422 84953;84954;84955;84956;84957;84958;84959 51749;51750 51750 2 EGFELAVSRPK Unmodified 1231.6561 0.65608651 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 2 2 2 1 1 23.605 22.86 2;3 6.6273E-05 9998 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.62 119.77 1010300000 56876000 55422000 46150000 2183500 1716600 1405300 83325000 72552000 77578000 4595500 0 0 121650000 40169000 45706000 1907300 2108000 1914400 125080000 133780000 132790000 1708700 0 1692600 4542 1388 4423 84960;84961;84962;84963;84964;84965;84966;84967;84968;84969;84970;84971;84972;84973;84974;84975;84976;84977;84978;84979;84980;84981;84982;84983;84984;84985 51751;51752;51753 51751 2 EGFEVTYLAPQR Unmodified 1408.6987 0.69867961 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 2 1 2 2 2 2 2 2 2 1 38.491 36.679 2;3 4.4885E-06 17826 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.59 153.69 2567900000 329200000 299030000 282110000 10142000 7963200 9473500 159820000 173220000 157810000 4305500 4872700 3627400 139520000 160800000 140520000 0 0 0 230920000 233420000 202290000 9622500 0 9189500 4543 228 4424 84986;84987;84988;84989;84990;84991;84992;84993;84994;84995;84996;84997;84998;84999;85000;85001;85002;85003;85004;85005;85006;85007;85008;85009;85010;85011;85012;85013;85014;85015;85016;85017;85018;85019;85020;85021 51754;51755;51756;51757;51758;51759;51760;51761;51762;51763;51764;51765;51766;51767;51768 51765 10 EGFFTQLATDELAK Unmodified 1568.7722 0.77223848 1911 P77522 sufB FeS cluster assembly protein SufB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.303 47.938 2 9.787E-09 23239 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155 153.25 248920000 21104000 21638000 17733000 0 0 0 35653000 36180000 33472000 0 0 0 11173000 11866000 10000000 0 0 0 20024000 17732000 12341000 0 0 0 4544 1911 4425 85022;85023;85024;85025;85026;85027;85028;85029;85030;85031;85032;85033 51769;51770;51771;51772;51773;51774;51775;51776;51777 51777 9 EGFNGMVIK Unmodified 993.49535 0.49535211 589 P0AAD6 sdaC Serine transporter yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.905 27.655 2 0.0011607 10186 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 91.626 80.258 109220000 5375200 0 0 1770800 1976700 0 8563400 0 0 6055700 4792100 5517500 10375000 7962100 9716800 2918400 1368000 1992000 11648000 12449000 11906000 4828800 0 0 4545 589 4426 85034;85035;85036;85037;85038;85039;85040;85041;85042;85043;85044;85045;85046;85047;85048;85049;85050;85051 51778;51779;51780;51781;51782;51783;51784;51785;51786;51787;51788;51789;51790 51781 13 EGFQPTETQPR Unmodified 1288.6048 0.60477922 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 16.768 17.467 2 0.00013231 6141 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 135.71 135.35 916540000 312570000 326820000 277140000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4546 1610 4427 85052;85053;85054 51791;51792;51793 51793 3 EGFYNNTIFHR Unmodified 1396.6524 0.65239812 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 3 3 3 1 1 2 2 2 1 1 1 2 1 1 1 1 29.385 28.068 2;3 2.9047E-10 12314 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 208.37 205.11 9131300000 950780000 893140000 998810000 3465200 3497600 3139900 886670000 898050000 859550000 1424000 0 1526600 595970000 614570000 595270000 812370 1145800 1153800 606560000 606340000 607650000 1071000 0 724580 4547 1222 4428 85055;85056;85057;85058;85059;85060;85061;85062;85063;85064;85065;85066;85067;85068;85069;85070;85071;85072;85073;85074;85075;85076;85077;85078;85079;85080;85081;85082;85083;85084;85085;85086;85087;85088;85089;85090;85091;85092 51794;51795;51796;51797;51798;51799;51800;51801;51802;51803;51804;51805;51806;51807;51808;51809;51810 51809 16 EGGGTQVLVLTGVPYENLDLPK Unmodified 2298.2107 0.21072764 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 53.035 51.61 2;3 7.826E-05 24469 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 80.412 77.571 206160000 0 0 0 0 0 0 23902000 16041000 23849000 0 0 0 31581000 26482000 30210000 0 0 0 15186000 19257000 19652000 0 0 0 4548 600 4429 85093;85094;85095;85096;85097;85098;85099;85100;85101;85102;85103;85104;85105;85106;85107;85108;85109 51811;51812;51813;51814;51815;51816;51817 51815 3 EGGIYTPALR Unmodified 1075.5662 0.56620887 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.312 26.001 2 3.848E-05 11790 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 141.2 123.81 1293400000 47853000 51948000 41856000 14429000 17199000 17955000 101010000 108410000 104030000 29730000 27152000 26160000 89547000 81884000 81243000 0 0 5361000 119640000 135030000 125320000 25776000 24681000 17213000 4549 1427 4430 85110;85111;85112;85113;85114;85115;85116;85117;85118;85119;85120;85121;85122;85123;85124;85125;85126;85127;85128;85129;85130;85131;85132 51818;51819;51820;51821;51822;51823;51824;51825;51826;51827;51828;51829;51830;51831;51832;51833;51834 51827 16 EGGLTPSLGVLK Unmodified 1169.6656 0.66558856 1715 P67826 cutC Copper homeostasis protein CutC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.344 34.919 2 0.0080046 17238 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 63.426 48.757 263960000 28807000 20431000 21344000 0 0 0 18765000 15015000 18369000 0 0 0 25805000 23749000 22351000 0 1216200 0 20955000 22074000 25081000 0 0 0 4550 1715 4431 85133;85134;85135;85136;85137;85138;85139;85140;85141;85142;85143;85144;85145 51835 51835 0 EGGTPTNWTR Unmodified 1117.5152 0.51523593 1415 P33230 rcbA Double-strand break reduction protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 16.905 16.894 2 0.0035083 4589 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 72.643 68.658 6546000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2598100 1972500 1975400 0 0 0 0 0 0 4551 1415 4432 85146;85147;85148 51836;51837;51838 51838 3 EGGVNDLK Unmodified 830.4134 0.41339662 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.184 12.955 2 0.098937 3588 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 49.442 4.1063 205590000 26900000 0 20476000 0 0 0 19122000 22746000 19626000 0 0 0 14155000 11253000 14628000 0 3588900 0 19409000 14178000 19512000 0 0 0 4552 1867 4433 85149;85150;85151;85152;85153;85154;85155;85156;85157;85158;85159;85160 51839 51839 1 EGHTGER Unmodified 784.34638 0.34637969 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 3.544 4.3956 2 0.0012952 548 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.43 51.452 66043000 9912700 12059000 9616400 0 0 0 0 0 0 0 0 0 5620300 5177000 0 0 0 0 13860000 5009000 4788400 0 0 0 4553 85 4434 85161;85162;85163;85164;85165;85166;85167;85168;85169;85170;85171 51840;51841;51842;51843;51844;51845;51846 51842 7 EGHTVSGAR Unmodified 912.44134 0.44134271 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 2 6.8356 7.5718 2 0.00010549 1429 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.81 102.88 173790000 64646000 51863000 57280000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4554 1374 4435 85172;85173;85174;85175 51847;51848 51848 2 EGHVVGFMGDGINDAPALR Unmodified 1953.9367 0.93669482 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 2 1 2 36.765 35.141 2;3 2.5167E-29 16163 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 283.05 279.92 966960000 0 0 0 1114000 0 1155000 8701900 10183000 0 8122100 6852000 5570000 229320000 217640000 201010000 28335000 29536000 28089000 49038000 50754000 50820000 14095000 13626000 12988000 4555 647 4436 85176;85177;85178;85179;85180;85181;85182;85183;85184;85185;85186;85187;85188;85189;85190;85191;85192;85193;85194;85195;85196;85197;85198;85199;85200;85201;85202 51849;51850;51851;51852;51853;51854;51855;51856;51857;51858;51859;51860;51861;51862;51863 51862 15 EGIEPDQPGVVGPIK Unmodified 1533.8039 0.80387296 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 32.007 30.477 2;3 3.7346E-13 14685 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 180.07 159.76 8366100000 1216900000 1002800000 1043400000 8744400 7302600 8632900 469560000 479390000 442960000 5797700 5149300 4506100 404820000 413190000 374620000 0 0 0 810530000 850450000 796240000 7919200 6115200 7114900 4556 1444 4437 85203;85204;85205;85206;85207;85208;85209;85210;85211;85212;85213;85214;85215;85216;85217;85218;85219;85220;85221;85222;85223;85224;85225;85226;85227;85228;85229;85230;85231;85232 51864;51865;51866;51867;51868;51869;51870;51871;51872;51873;51874;51875;51876;51877;51878;51879;51880;51881;51882;51883;51884;51885;51886 51867 21 EGIFCGVSSGGAVAGALR Unmodified 1706.841 0.84100352 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.739 39.074 2 3.7425E-17 19378 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 211.26 199.4 647250000 46023000 45952000 39967000 0 0 0 51249000 44710000 41510000 0 0 0 56621000 51932000 55609000 0 0 0 71003000 74316000 68352000 0 0 0 4557 1133 4438 85233;85234;85235;85236;85237;85238;85239;85240;85241;85242;85243;85244 51887;51888;51889;51890;51891;51892;51893;51894;51895;51896;51897;51898 51888 12 EGIHTCLDTNGFVR Unmodified 1617.7569 0.75693954 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.678 26.49 3 1.3606E-09 11489 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 120.53 115.73 203300000 10617000 14262000 14693000 1461800 989860 1175500 24855000 20756000 20742000 0 0 0 16483000 12441000 13871000 0 0 0 16415000 16386000 18150000 0 0 0 4558 540 4439 85245;85246;85247;85248;85249;85250;85251;85252;85253;85254;85255;85256;85257;85258;85259 51899;51900;51901;51902;51903;51904;51905;51906;51907;51908;51909 51909 11 EGIMDEGESLYSPANIMLMHHVTAALR Unmodified 2984.4194 0.41943334 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 50.544 49.349 3;4 1.2976E-32 19554 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 202.74 200.24 2358400000 87593000 89790000 76164000 16652000 15609000 20112000 93393000 80255000 86546000 203620000 171480000 166100000 98799000 90547000 74143000 136450000 111240000 133240000 102550000 113930000 95767000 97435000 109180000 87757000 4559 1057 4440 85260;85261;85262;85263;85264;85265;85266;85267;85268;85269;85270;85271;85272;85273;85274;85275;85276;85277;85278;85279;85280;85281;85282;85283;85284;85285;85286;85287;85288;85289;85290;85291;85292;85293;85294;85295;85296;85297;85298;85299;85300;85301;85302;85303;85304;85305 51910;51911;51912;51913;51914;51915;51916;51917;51918;51919;51920;51921;51922;51923;51924;51925;51926;51927;51928;51929;51930;51931;51932;51933;51934;51935;51936;51937;51938;51939;51940;51941;51942;51943;51944;51945;51946 51929 37 EGINCNLTLLFSFAQAR Unmodified 1952.9778 0.97783135 402;401 P0A870;P0A867 talB;talA Transaldolase B;Transaldolase A no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 55.101 53.626 2;3 1.1342E-103 26385 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 363.85 350.42 6009600000 521040000 539740000 527940000 0 0 0 595610000 684860000 633820000 0 0 0 507950000 285470000 388480000 0 0 0 174500000 597380000 552800000 0 0 0 4560 402;401 4441 85306;85307;85308;85309;85310;85311;85312;85313;85314;85315;85316;85317;85318;85319;85320;85321;85322;85323;85324;85325;85326;85327;85328 51947;51948;51949;51950;51951;51952;51953;51954;51955;51956;51957;51958;51959;51960;51961;51962;51963;51964;51965;51966;51967;51968;51969 51962 23 EGITATDLVLTVTQMLR Unmodified 1860.0026 0.002649122 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 1 1 1 1 1 55.904 54.448 2;3 1.675E-39 27152 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 321.03 308.03 187730000 61506000 52644000 50714000 0 0 0 2626100 1926400 0 0 0 0 5545600 2970200 3139500 0 0 0 64794 311590 6281300 0 0 0 4561 1254 4442 85329;85330;85331;85332;85333;85334;85335;85336;85337;85338;85339;85340;85341;85342;85343;85344 51970;51971;51972;51973;51974;51975 51970 6 EGIVINIAELR Unmodified 1225.703 0.7030367 1795 P75954 ycfS Probable L,D-transpeptidase YcfS yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.968 44.538 2 2.4586E-05 21764 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 134.25 110.93 39539000 0 0 0 0 0 0 1996300 0 0 0 0 0 4160400 4155700 3286700 0 0 0 8234000 8812500 8893400 0 0 0 4562 1795 4443 85345;85346;85347;85348;85349;85350;85351 51976;51977;51978;51979 51976 4 EGIVQVFFDPDR Unmodified 1420.6987 0.69867961 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 52.002 50.778 2 1.4641E-11 24694 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 180.67 169.04 863260000 52812000 48792000 50437000 0 0 0 0 93257000 89123000 0 0 0 101980000 91442000 62909000 0 0 0 82637000 93821000 96050000 0 0 0 4563 1189 4444 85352;85353;85354;85355;85356;85357;85358;85359;85360;85361;85362 51980;51981;51982;51983;51984;51985;51986;51987;51988 51983 5 EGIVQVFFDPDRADALK Unmodified 1918.9789 0.97887721 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 49.745 48.345 2;3 3.421E-24 23581 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 249.33 224.03 888490000 55820000 45621000 51718000 0 750370 0 70717000 84110000 83355000 0 0 0 83326000 67401000 73381000 0 0 0 81935000 101180000 87883000 0 0 1294500 4564 1189 4445 85363;85364;85365;85366;85367;85368;85369;85370;85371;85372;85373;85374;85375;85376;85377;85378;85379;85380;85381;85382;85383;85384;85385;85386;85387;85388 51989;51990;51991;51992;51993;51994;51995;51996;51997;51998;51999;52000;52001;52002;52003 51990 15 EGIWIEK Unmodified 873.45962 0.45961853 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 27.947 26.647 2 0.030016 12577 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 67.032 56.726 264070000 0 0 3091800 0 0 0 43139000 44658000 42636000 0 604630 0 37231000 37327000 35042000 0 0 0 10040000 10298000 0 0 0 0 4565 1097 4446 85389;85390;85391;85392;85393;85394;85395;85396;85397;85398 52004;52005;52006;52007;52008 52004 5 EGIYVTGFFYPVVPK Unmodified 1714.897 0.89704506 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.395 52.946 2 1.3547E-06 26249 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.47 111.96 2463200000 314790000 298870000 275360000 0 0 0 170200000 133530000 121790000 0 0 0 190950000 199350000 175160000 0 0 0 203710000 188590000 190930000 0 0 0 4566 635 4447 85399;85400;85401;85402;85403;85404;85405;85406;85407;85408;85409;85410 52009;52010;52011;52012 52009 4 EGKPELK Unmodified 799.44397 0.44396847 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 10.253 11.067 2 0.013491 2473 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.752 35.227 1600600000 500710000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 403000000 309270000 387640000 0 0 0 4567 1221 4448 85411;85412;85413;85414 52013;52014;52015 52014 3 EGKPVFYYTWTPYWVSNELKPGK Unmodified 2788.3901 0.39008899 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.809 47.477 4 1.2484E-06 23644 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 99.441 97.217 347100000 27647000 26904000 15745000 0 0 0 48563000 38124000 31087000 0 0 0 14770000 13135000 14615000 0 0 0 38394000 39726000 38392000 0 0 0 4568 954 4449 85415;85416;85417;85418;85419;85420;85421;85422;85423;85424;85425;85426 52016;52017;52018;52019;52020;52021;52022;52023;52024;52025;52026;52027 52016 12 EGLDHFFSAR Unmodified 1177.5516 0.55162144 1851 P76329 yedP Putative mannosyl-3-phosphoglycerate phosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 30.782 29.307 3 0.0016099 13938 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.478 59.902 147060000 36227000 33602000 33277000 0 0 0 10369000 13222000 15682000 0 0 0 0 0 0 0 0 0 4680300 0 0 0 0 0 4569 1851 4450 85427;85428;85429;85430;85431;85432;85433 52028;52029;52030 52030 3 EGLIAVVSVK Unmodified 1013.6121 0.61209643 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 35.5 33.802 1;2 0.00061 16220 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 91.867 64.613 744650000 46873000 40708000 36526000 2289000 2000900 1962100 62018000 63224000 55509000 12442000 13411000 11639000 58971000 66538000 56996000 0 1985000 0 71515000 66026000 58340000 4683300 4980400 6014300 4570 883 4451 85434;85435;85436;85437;85438;85439;85440;85441;85442;85443;85444;85445;85446;85447;85448;85449;85450;85451;85452;85453;85454;85455;85456;85457;85458;85459;85460;85461;85462;85463;85464;85465;85466;85467;85468;85469;85470 52031;52032;52033;52034;52035;52036;52037;52038;52039;52040;52041;52042;52043;52044;52045;52046;52047 52040 14 EGLIDPNHSVQIGIR Unmodified 1646.874 0.87401821 1626 P60651 speB Agmatinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 33.646 32.206 2;3 1.8278E-12 15176 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 178.95 161.09 1414400000 102740000 81282000 67013000 0 0 0 117630000 125850000 120490000 0 0 0 111150000 103380000 101500000 0 0 0 159750000 168890000 154690000 0 0 0 4571 1626 4452 85471;85472;85473;85474;85475;85476;85477;85478;85479;85480;85481;85482;85483;85484;85485;85486;85487;85488;85489;85490;85491;85492;85493;85494 52048;52049;52050;52051;52052;52053;52054;52055;52056;52057;52058;52059;52060 52054 12 EGLINPER Unmodified 926.48214 0.48214489 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 18.337 18.949 2 0.00079747 6716 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 122.74 94.319 550620000 3050800 3838600 0 0 0 0 74347000 77373000 68353000 0 0 0 55801000 62089000 46438000 0 0 0 55189000 57093000 47044000 0 0 0 4572 1467 4453 85495;85496;85497;85498;85499;85500;85501;85502;85503;85504;85505 52061;52062;52063;52064;52065;52066;52067;52068;52069 52068 9 EGLLEPLAVTER Unmodified 1325.7191 0.7190807 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 41.357 39.874 2 1.9633E-10 19521 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.76 100.02 322140000 0 168800000 153340000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4573 34 4454 85506;85507;85508;85509;85510;85511;85512;85513;85514 52070;52071;52072;52073;52074;52075;52076;52077;52078 52073 9 EGLNQIFK Unmodified 947.50763 0.50763136 1924 P77667 sufA Protein SufA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.041 29.646 2 0.012865 14310 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 74.415 59.64 539360000 66328000 59477000 51810000 1771900 1569000 1860100 71225000 66525000 67255000 3521400 3960900 3469900 20759000 18032000 18000000 1119000 1121400 774410 25792000 24760000 24684000 2111800 1734800 1698500 4574 1924 4455 85515;85516;85517;85518;85519;85520;85521;85522;85523;85524;85525;85526;85527;85528;85529;85530;85531;85532;85533;85534;85535;85536;85537;85538 52079 52079 1 EGLNVLQYFISTHGAR Unmodified 1803.9268 0.92678206 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 1 2 4 3 2 2 2 2 2 2 2 50.289 49.161 2;3;4 2.5011E-49 17566 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 307.95 300.98 83303000000 685280000 543450000 417610000 39955000 39745000 42883000 468220000 403070000 425570000 4687400000 4857000000 5173400000 345400000 292810000 357860000 12765000000 14780000000 15157000000 538440000 614270000 551620000 7059000000 5955800000 7102100000 4575 458 4456 85539;85540;85541;85542;85543;85544;85545;85546;85547;85548;85549;85550;85551;85552;85553;85554;85555;85556;85557;85558;85559;85560;85561;85562;85563;85564;85565;85566;85567;85568;85569;85570;85571;85572;85573;85574;85575;85576;85577;85578;85579;85580;85581;85582;85583;85584;85585;85586 52080;52081;52082;52083;52084;52085;52086;52087;52088;52089;52090;52091;52092;52093;52094;52095;52096;52097;52098;52099;52100;52101;52102;52103;52104;52105;52106;52107;52108;52109;52110;52111;52112;52113;52114;52115;52116;52117 52087 36 EGLPAADFSVFYHLISIDR Unmodified 2149.0844 0.084404917 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.025 53.948 3 5.8318E-07 21539 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 100.92 97.478 283120000 0 0 0 9099100 7436400 0 0 0 0 30697000 33564000 24509000 0 0 0 11834000 17887000 18537000 87184000 0 0 12291000 16753000 13324000 4576 1426 4457 85587;85588;85589;85590;85591;85592;85593;85594;85595;85596;85597;85598 52118;52119;52120;52121;52122;52123;52124;52125;52126 52125 9 EGLPLRR Unmodified 839.49774 0.49773538 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 13.123 13.877 2 0.019213 4201 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 81.864 65.817 62153000 0 0 0 0 0 0 23477000 18221000 20455000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4577 1265 4458 85599;85600;85601 52127 52127 1 EGLSEEAAR Unmodified 960.45124 0.45123869 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 12.317 13.176 2 7.0997E-05 3570 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 143.61 124.25 1502900000 90162000 90025000 95288000 0 0 0 0 0 0 0 0 0 224460000 188460000 199700000 0 0 0 218320000 204410000 192110000 0 0 0 4578 1283 4459 85602;85603;85604;85605;85606;85607;85608;85609;85610 52128;52129;52130;52131;52132;52133;52134;52135;52136 52136 9 EGLTVFR Unmodified 820.4443 0.44430282 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 27.462 26.334 2 0.00084363 11945 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.37 114.84 2258900000 254270000 222490000 233090000 0 0 0 205660000 202630000 205860000 0 0 0 138560000 139840000 154450000 0 0 0 168940000 172040000 161040000 0 0 0 4579 94 4460 85611;85612;85613;85614;85615;85616;85617;85618;85619;85620;85621;85622;85623 52137;52138;52139;52140;52141;52142;52143;52144;52145;52146;52147;52148;52149 52142 13 EGLVHISQIADK Unmodified 1308.7038 0.70376498 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 23.789 22.941 2;3 3.9776E-26 9884 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 248.56 230.34 3759600000 214290000 215150000 175310000 19185000 17996000 15155000 316600000 334120000 338490000 3401700 4004700 2621500 341140000 316000000 286490000 0 0 0 397470000 371640000 386260000 2045100 2231700 0 4580 107 4461 85624;85625;85626;85627;85628;85629;85630;85631;85632;85633;85634;85635;85636;85637;85638;85639;85640;85641;85642;85643;85644;85645;85646;85647;85648;85649;85650;85651;85652;85653;85654;85655;85656;85657;85658;85659 52150;52151;52152;52153;52154;52155;52156;52157;52158;52159;52160;52161;52162;52163;52164;52165;52166;52167;52168;52169;52170;52171;52172;52173;52174 52166 25 EGLVHISQIADKR Unmodified 1464.8049 0.80487601 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 3 3 3 2 2 2 2 3 1 3 2 3 2 1 2 1 2 1 2 2 19.112 19.494 2;3;4 1.7558E-12 7377 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 234.39 214.63 1032000000 44087000 96529000 44090000 20544000 22404000 21097000 74146000 71756000 76361000 12086000 11934000 6409800 132200000 59160000 94540000 2486700 2438100 0 80341000 47384000 82481000 4528000 11903000 13137000 4581 107 4462 85660;85661;85662;85663;85664;85665;85666;85667;85668;85669;85670;85671;85672;85673;85674;85675;85676;85677;85678;85679;85680;85681;85682;85683;85684;85685;85686;85687;85688;85689;85690;85691;85692;85693;85694;85695;85696;85697;85698;85699;85700;85701;85702;85703;85704;85705;85706;85707;85708 52175;52176;52177;52178;52179;52180;52181;52182;52183;52184;52185;52186;52187;52188;52189;52190;52191;52192;52193;52194;52195;52196;52197;52198;52199;52200;52201;52202;52203;52204;52205;52206;52207 52187 31 EGMNNIIAAIEAAK Unmodified 1443.7392 0.73916421 759 P0ACZ4 evgA Positive transcription regulator EvgA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.396 50.148 2 3.1599E-06 23627 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 121.02 115.06 331960000 27418000 25934000 26673000 0 0 0 33210000 33485000 36018000 0 0 0 20028000 15307000 22929000 0 0 0 28102000 34321000 28538000 0 0 0 4582 759 4463 85709;85710;85711;85712;85713;85714;85715;85716;85717;85718;85719;85720 52208;52209;52210;52211;52212;52213;52214;52215 52213 8 EGMRVLYEK Unmodified 1123.5696 0.56957969 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.608 35.866 2 0.01157 17200 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 69.998 38.709 663290000 57001000 55616000 51280000 1848100 2006100 2164800 42868000 55052000 47513000 4208800 5827600 0 43611000 32221000 33127000 0 2187600 0 67082000 75512000 71230000 5020600 3760200 4156700 4583 1341 4464 85721;85722;85723;85724;85725;85726;85727;85728;85729;85730;85731;85732;85733;85734;85735;85736;85737;85738;85739;85740;85741 52216;52217;52218;52219 52217 4 EGNDFYHEMTDSNVIDK Unmodified 2012.8422 0.84218531 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 33.762 32.088 2;3 1.294E-61 15536 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 337.22 337.22 6529000000 215250000 175620000 173440000 0 3981700 0 585220000 597720000 528650000 45032000 41129000 45474000 619390000 573220000 590760000 0 0 0 736060000 757720000 736620000 36910000 34188000 32612000 4584 646 4465 85742;85743;85744;85745;85746;85747;85748;85749;85750;85751;85752;85753;85754;85755;85756;85757;85758;85759;85760;85761;85762;85763;85764;85765;85766;85767;85768;85769;85770;85771;85772;85773;85774;85775;85776;85777;85778;85779 52220;52221;52222;52223;52224;52225;52226;52227;52228;52229;52230;52231;52232;52233;52234;52235;52236;52237;52238;52239;52240;52241;52242;52243;52244;52245;52246;52247;52248;52249;52250;52251;52252 52227 31 EGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNR Unmodified 3654.6355 0.63551036 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.236 48.799 4 1.2275E-18 19494 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 150.11 150.11 110630000 0 0 0 5949300 7465900 6579700 0 0 0 25685000 17446000 17771000 0 0 0 0 0 0 0 0 0 0 13240000 16490000 4585 646 4466 85780;85781;85782;85783;85784;85785;85786;85787 52253;52254;52255;52256;52257;52258;52259;52260 52254 8 EGNEIIVASNFTPVPR Unmodified 1741.8999 0.89989861 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By MS/MS 1 37.657 36.25 3 0.16999 17504 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 5.2096 0 27930000 0 27930000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4586 169 4467 85788 52261 52261 1 EGNKPPK Unmodified 768.413 0.41300269 469 P0A8X0 yjgA UPF0307 protein YjgA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 6.0117 6.7442 2 0.0058319 1130 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 108.24 66.736 36256000 13368000 13627000 9261000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4587 469 4468 85789;85790;85791 52262;52263;52264 52262 3 EGNPNLSFIYLK Unmodified 1393.7242 0.72416608 1589 P46859 gntK Thermoresistant gluconokinase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.162 42.595 2 6.5282E-05 20803 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 103.7 92.549 450390000 0 0 0 0 0 0 0 59455000 63157000 0 0 0 78490000 0 69600000 0 0 0 93173000 0 86519000 0 0 0 4588 1589 4469 85792;85793;85794;85795;85796;85797 52265;52266;52267;52268 52265 4 EGNTLVIVTADHAHASQIVAPDTK Unmodified 2486.2765 0.2765158 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 3 3 3 1 1 3 3 3 1 1 1 3 2 3 2 1 1 29.398 28.067 2;3;4 6.9489E-60 12408 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 294.65 275.41 2878200000 0 0 0 4946500 4362600 5125000 247140000 262570000 247930000 0 3579400 4253900 373000000 398600000 350050000 3540900 3269800 4828500 430670000 121990000 391920000 8609300 6149400 5710500 4589 38 4470 85798;85799;85800;85801;85802;85803;85804;85805;85806;85807;85808;85809;85810;85811;85812;85813;85814;85815;85816;85817;85818;85819;85820;85821;85822;85823;85824;85825;85826;85827;85828;85829;85830;85831;85832;85833;85834;85835;85836;85837;85838 52269;52270;52271;52272;52273;52274;52275;52276;52277;52278;52279;52280;52281;52282;52283;52284;52285 52285 17 EGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTK Unmodified 3580.8849 0.88492383 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 35.952 34.297 5 0.059197 15729 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 34.937 29.778 145430000 0 0 0 1726800 1123700 878080 11585000 11939000 12188000 0 0 0 15235000 21050000 18900000 0 0 0 13160000 18323000 15340000 0 3977200 0 4590 38 4471 85839;85840;85841;85842;85843;85844;85845;85846;85847;85848;85849;85850;85851 52286;52287 52287 2 EGPAEDFANQEAIAK Unmodified 1588.7369 0.73691561 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.626 26.278 2 3.6394E-15 12168 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 193.22 184.03 2007700000 190130000 176470000 171780000 0 2484100 0 182350000 163340000 159260000 2842000 3361700 1738200 135620000 143300000 117300000 0 0 0 184750000 187410000 183310000 2234600 0 0 4591 295 4472 85852;85853;85854;85855;85856;85857;85858;85859;85860;85861;85862;85863;85864;85865;85866;85867;85868 52288;52289;52290;52291;52292;52293;52294;52295;52296;52297;52298;52299;52300;52301;52302 52291 15 EGQEPDPR Unmodified 926.40937 0.40937388 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.502 11.318 2 0.010731 2603 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 77.923 66.512 576510000 76418000 71576000 81866000 0 0 0 50550000 50435000 48454000 0 0 0 35504000 27245000 26301000 0 0 0 38310000 35487000 34370000 0 0 0 4592 43 4473 85869;85870;85871;85872;85873;85874;85875;85876;85877;85878;85879;85880 52303;52304 52304 2 EGQEVIVQIDKEER Unmodified 1670.8475 0.84752869 1183 P21513 rne Ribonuclease E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 1 1 1 2 2 2 1 2 2 2 1 2 2 23.348 22.594 2;3 6.6155E-08 9768 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.92 144.91 335860000 40700000 31583000 34626000 7485300 8383000 8392100 5752100 15822000 18476000 6221200 6200900 3896000 15536000 13713000 14390000 2107900 0 0 27445000 30838000 33523000 2157600 3903500 4714200 4593 1183 4474 85881;85882;85883;85884;85885;85886;85887;85888;85889;85890;85891;85892;85893;85894;85895;85896;85897;85898;85899;85900;85901;85902;85903;85904;85905;85906;85907;85908;85909;85910;85911;85912;85913;85914;85915;85916;85917;85918 52305;52306;52307;52308;52309;52310;52311;52312;52313;52314;52315;52316;52317;52318;52319;52320;52321;52322;52323;52324;52325;52326;52327 52315 23 EGQHAFVNFR Unmodified 1203.5785 0.57850489 470 P0A8X2 yceI Protein YceI yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.287 19.802 3 0.0072518 7592 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 49.06 46.022 227650000 25249000 26706000 20623000 0 0 0 12153000 11213000 11745000 0 0 0 10646000 10475000 12319000 0 0 0 32854000 29580000 24087000 0 0 0 4594 470 4475 85919;85920;85921;85922;85923;85924;85925;85926;85927;85928;85929;85930 52328;52329;52330;52331;52332;52333 52331 3 EGQLDDK Unmodified 803.36611 0.36611208 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 10.089 10.924 2 0.08045 2423 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 57.471 40.385 37207000 0 5996300 4393600 0 0 0 0 1961600 1671700 0 0 0 2958500 2882500 0 0 0 0 5194800 5751600 6395800 0 0 0 4595 245 4476 85931;85932;85933;85934;85935;85936;85937;85938;85939 52334 52334 1 EGQNLDFVGGAE Unmodified 1234.5466 0.54659564 822 P0ADZ0 rplW 50S ribosomal protein L23 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.434 36.532 2 1.4559E-11 14492 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 180.8 180.22 802920000 109270000 130610000 1491600 12438000 12813000 12196000 50447000 32065000 40255000 27805000 10558000 11060000 0 0 963950 0 0 0 94142000 100600000 98835000 18252000 18160000 20958000 4596 822 4477 85940;85941;85942;85943;85944;85945;85946;85947;85948;85949;85950;85951;85952;85953;85954;85955;85956;85957;85958 52335;52336;52337;52338;52339;52340;52341;52342;52343;52344;52345 52335 11 EGQSLPVGVGQPTLK Unmodified 1508.8199 0.81985738 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.337 29.913 2 7.8983E-07 14295 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.55 121.43 904710000 73619000 64032000 65044000 0 0 0 73029000 74318000 72126000 0 0 0 66287000 75573000 55637000 0 0 0 100700000 93654000 88405000 769630 0 1514900 4597 1019 4478 85959;85960;85961;85962;85963;85964;85965;85966;85967;85968;85969;85970;85971;85972 52346;52347;52348;52349;52350;52351;52352;52353;52354;52355 52347 7 EGRPSEGETLIAR Unmodified 1413.7212 0.72120596 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 15.427 16.04 2;3 5.4835E-24 5396 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 254.07 238.07 3623200000 194780000 184690000 165730000 21074000 19617000 16991000 335920000 353170000 311880000 10910000 9449200 10054000 296240000 254110000 297370000 0 2650400 2318700 374630000 365170000 370550000 9128700 8527400 8269000 4598 107 4479 85973;85974;85975;85976;85977;85978;85979;85980;85981;85982;85983;85984;85985;85986;85987;85988;85989;85990;85991;85992;85993;85994;85995;85996;85997;85998;85999;86000;86001;86002;86003;86004;86005;86006;86007;86008;86009;86010;86011;86012;86013;86014;86015;86016 52356;52357;52358;52359;52360;52361;52362;52363;52364;52365;52366;52367;52368;52369;52370;52371;52372;52373;52374;52375;52376;52377;52378 52370 23 EGRVPLHTLR Unmodified 1176.6727 0.67273963 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 1 2 1 1 2 1 1 1 1 2 12.804 13.262 2;3 0.00023906 2821 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 94.309 75.973 115100000 0 0 0 10936000 7093400 9344200 0 0 0 0 15474000 3834000 0 0 0 15960000 11734000 10746000 0 0 0 4635400 8741500 16598000 4599 374 4480 86017;86018;86019;86020;86021;86022;86023;86024;86025;86026;86027;86028;86029;86030;86031 52379;52380 52380 2 EGSDAIYAGTR Unmodified 1138.5255 0.52546627 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 15.94 16.822 2 1.731E-06 5862 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 115.82 96.847 187170000 0 49473000 43347000 27859000 33717000 32773000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4600 151 4481 86032;86033;86034;86035;86036;86037 52381;52382;52383 52381 3 EGSDIEAGVSLYQIDPATYQATYDSAK Unmodified 2891.3349 0.33487812 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.261 48.795 3 2.8776E-08 19755 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 110.03 107.48 89529000 0 0 0 2117800 1518900 0 13626000 0 11255000 7848400 5256900 5225600 0 0 3351400 0 0 0 12399000 12571000 11548000 0 2811200 0 4601 826 4482 86038;86039;86040;86041;86042;86043;86044;86045;86046;86047;86048;86049 52384;52385 52384 1 EGSGMVEFSR Unmodified 1097.4812 0.48115861 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.516 21.86 2 0.00032019 8908 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 110.76 103.93 270150000 22031000 17769000 16236000 4641500 4461600 4225000 15987000 17428000 16573000 8547800 6306400 7689900 16591000 15618000 13008000 0 0 0 19530000 19720000 23246000 6853000 6598000 7088400 4602 1909 4483 86050;86051;86052;86053;86054;86055;86056;86057;86058;86059;86060;86061;86062;86063;86064;86065;86066;86067;86068;86069;86070 52386;52387;52388;52389;52390;52391;52392;52393;52394;52395;52396;52397;52398 52396 12 EGSSLLGSDAGELAGAGK Unmodified 1617.7846 0.78459408 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.742 31.336 2 2.0277E-13 14169 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 169.62 163.24 1022000000 98682000 86901000 87413000 0 0 544010 91010000 98841000 85432000 0 0 0 65694000 69556000 69160000 0 0 0 87274000 96092000 85380000 0 0 0 4603 85 4484 86071;86072;86073;86074;86075;86076;86077;86078;86079;86080;86081;86082;86083 52399;52400;52401;52402;52403;52404;52405;52406;52407;52408;52409;52410 52410 12 EGSVVVPVCAAVEADIAELDDEERDEFMQELGLEEPGLNR Unmodified 4429.0577 0.057740338 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.607 54.134 3;4 3.8758E-49 26580 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 224.87 223.79 927150000 85372000 82681000 58730000 0 0 0 43712000 39833000 37368000 0 0 0 92152000 84649000 86520000 0 0 0 100820000 103750000 111570000 0 0 0 4604 680 4485 86084;86085;86086;86087;86088;86089;86090;86091;86092;86093;86094;86095;86096;86097;86098;86099;86100;86101;86102;86103;86104;86105;86106;86107 52411;52412;52413;52414;52415;52416 52413 6 EGTDLFLK Unmodified 921.48075 0.48074791 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.863 29.48 2 0.0064075 14082 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 79.469 42.882 4043300000 798660000 720610000 607080000 14719000 13527000 14403000 204840000 0 0 40508000 42656000 42080000 0 228230000 0 19308000 13650000 12721000 386990000 412110000 397610000 24574000 24151000 24828000 4605 375 4486 86108;86109;86110;86111;86112;86113;86114;86115;86116;86117;86118;86119;86120;86121;86122;86123;86124;86125;86126;86127;86128;86129;86130;86131 52417;52418;52419;52420;52421;52422;52423;52424;52425;52426;52427;52428;52429;52430;52431;52432;52433;52434;52435;52436;52437;52438 52422 22 EGTDYGEHER Unmodified 1191.4792 0.47924436 1714 P67624 yheU UPF0270 protein YheU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 10.424 11.123 2 1.7286E-06 2543 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 161.79 161.79 41812000 18283000 12009000 11520000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4606 1714 4487 86132;86133;86134 52439;52440;52441 52440 3 EGTEEPWYVVDKDVENNILVVAQGHEHPR Unmodified 3358.6218 0.62183285 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 46.836 45.432 4;5 1.493E-07 22007 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 90.37 88.366 945920000 102430000 106440000 96805000 0 0 0 60778000 62208000 59152000 0 0 0 68890000 68733000 55329000 0 0 0 88503000 90409000 83695000 2552900 0 0 4607 1272 4488 86135;86136;86137;86138;86139;86140;86141;86142;86143;86144;86145;86146;86147;86148;86149;86150;86151;86152;86153;86154;86155;86156;86157;86158;86159 52442;52443;52444;52445;52446;52447;52448;52449;52450;52451;52452;52453;52454;52455;52456;52457;52458 52450 17 EGTLHKGDIVLCGFEYGR Unmodified 2049.9942 0.9942097 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.069 29.521 4 1.526E-06 9456 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 89.484 85.765 28928000 0 0 0 1923600 2070700 1647700 0 0 0 4524100 3540300 2865600 0 0 0 0 4964400 3928100 0 0 0 1687200 1775800 0 4608 297 4489 86160;86161;86162;86163;86164;86165;86166;86167;86168;86169 52459 52459 1 EGTRPAVVIPTNEELVIAQDASR Unmodified 2464.2922 0.29216586 224 P0A6A3 ackA Acetate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 3 1 1 1 3 3 3 1 1 1 3 3 3 1 1 1 3 3 4 1 1 1 39.516 37.869 2;3;4 3.8863E-63 18270 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 301.77 272.76 14555000000 684710000 685160000 568690000 3528700 3343900 4281600 1339700000 1189600000 1228800000 3825800 3721800 4240800 1640400000 1358900000 1577600000 10052000 5499500 6104000 1402200000 1508100000 1316000000 3485200 3659500 3376900 4609 224 4490 86170;86171;86172;86173;86174;86175;86176;86177;86178;86179;86180;86181;86182;86183;86184;86185;86186;86187;86188;86189;86190;86191;86192;86193;86194;86195;86196;86197;86198;86199;86200;86201;86202;86203;86204;86205;86206;86207;86208;86209;86210;86211;86212;86213;86214;86215;86216;86217 52460;52461;52462;52463;52464;52465;52466;52467;52468;52469;52470;52471;52472;52473;52474;52475;52476;52477;52478;52479;52480;52481;52482;52483;52484;52485;52486;52487;52488;52489;52490;52491;52492;52493;52494;52495;52496;52497;52498;52499;52500;52501;52502 52483 43 EGVAGWAGENLPLVR Unmodified 1566.8154 0.8154407 981 P0AG27 yibN Uncharacterized protein YibN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 45.958 44.293 2;3 3.0201E-27 21563 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 240.1 237.31 1050200000 40938000 44934000 43164000 15040000 12531000 15231000 72335000 61221000 62315000 34241000 33911000 33470000 70815000 72950000 63331000 0 0 0 101270000 102150000 103110000 25355000 40721000 1113500 4610 981 4491 86218;86219;86220;86221;86222;86223;86224;86225;86226;86227;86228;86229;86230;86231;86232;86233;86234;86235;86236;86237;86238;86239;86240;86241;86242;86243;86244;86245;86246;86247;86248;86249;86250;86251;86252;86253;86254;86255;86256 52503;52504;52505;52506;52507;52508;52509;52510;52511;52512;52513;52514;52515;52516;52517;52518;52519;52520;52521;52522;52523;52524 52512 20 EGVCGSDGLNMNGK Unmodified 1436.6024 0.60241274 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.585 19.915 2 6.6971E-11 7640 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 166.34 165.83 208340000 12677000 7936900 9026500 14679000 13142000 13353000 0 0 0 7461100 8945600 6491600 9662400 8472500 8467400 0 1842900 0 16245000 18080000 14859000 11740000 13257000 12001000 4611 150 4492 86257;86258;86259;86260;86261;86262;86263;86264;86265;86266;86267;86268;86269;86270;86271;86272;86273;86274;86275 52525;52526;52527;52528;52529;52530;52531;52532;52533;52534 52533 10 EGVDAFIHHAK Unmodified 1222.6095 0.60947067 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 16.904 17.639 2 0.025446 6275 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 56.434 47.193 69807000 4680900 5474300 0 0 0 0 47445000 0 2873500 0 0 0 1883900 0 1370900 0 0 0 3124600 2954600 0 0 0 0 4612 1083 4493 86276;86277;86278;86279;86280;86281;86282;86283 52535 52535 1 EGVEYAWFNNVETKPGQGFPTDWENQEK Unmodified 3298.4843 0.48433632 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.132 47.776 3 4.553E-23 18864 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 173.59 173.58 296710000 0 4702500 0 1832300 1843300 1325200 16036000 18220000 17113000 10923000 7673600 10420000 15319000 10823000 12194000 2066700 0 0 21749000 21635000 15232000 39001000 34406000 34193000 4613 1067 4494 86284;86285;86286;86287;86288;86289;86290;86291;86292;86293;86294;86295;86296;86297;86298;86299;86300;86301;86302;86303 52536;52537;52538;52539;52540;52541 52540 6 EGVFHTEWLD Unmodified 1231.551 0.55095274 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.06 42.545 2 0.0006595 21012 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.298 89.298 5869400000 355570000 329650000 308930000 0 0 0 543900000 537510000 516340000 0 0 0 548770000 503350000 552290000 0 0 0 526390000 514910000 631770000 0 0 0 4614 24 4495 86304;86305;86306;86307;86308;86309;86310;86311;86312;86313;86314;86315 52542;52543;52544;52545;52546;52547;52548;52549;52550;52551;52552;52553 52543 12 EGVFVNGAAQGYLIDK Unmodified 1679.8519 0.85188578 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 39.993 38.33 2 3.1241E-06 18509 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 124.12 116.86 65807000 5394500 0 5668800 0 0 0 10534000 0 8011600 0 0 0 0 5069100 6510400 0 0 0 10176000 7206700 7235600 0 0 0 4615 954 4496 86316;86317;86318;86319;86320;86321;86322;86323;86324 52554;52555 52555 2 EGVGDVKPFL Unmodified 1059.5601 0.56006086 962 P0AFR4 yciO Uncharacterized protein YciO yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.68 37.031 2 0.0047588 18297 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.046 69.106 565750000 85783000 74008000 64318000 9969800 6920000 0 32491000 27563000 33009000 751380 1228700 0 31344000 30771000 27317000 1871900 913640 0 46233000 44461000 43274000 1345700 2175200 0 4616 962 4497 86325;86326;86327;86328;86329;86330;86331;86332;86333;86334;86335;86336;86337;86338;86339;86340;86341;86342;86343;86344 52556;52557;52558;52559;52560;52561;52562;52563;52564;52565 52557 10 EGVHLHDEDPAR Unmodified 1373.6324 0.63239096 1851 P76329 yedP Putative mannosyl-3-phosphoglycerate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 1 1 11.629 12.443 2;3 1.2932E-06 3381 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 179.42 179.42 316660000 78999000 67750000 67326000 0 470790 0 28128000 29245000 23372000 0 0 0 3757800 3538800 3735900 0 0 0 0 4373700 5961900 0 0 0 4617 1851 4498 86345;86346;86347;86348;86349;86350;86351;86352;86353;86354;86355;86356;86357;86358;86359;86360;86361;86362 52566;52567;52568;52569;52570;52571 52568 6 EGVIGEILSCHTK Unmodified 1441.7235 0.72351415 1529 P39353 yjhC Uncharacterized oxidoreductase YjhC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 33.203 31.746 3 9.02E-07 15528 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.12 109.65 219740000 29596000 34817000 29280000 0 0 0 19901000 20424000 21404000 0 0 0 12197000 0 8992700 0 0 0 14397000 14087000 14640000 0 0 0 4618 1529 4499 86363;86364;86365;86366;86367;86368;86369;86370;86371;86372;86373 52572;52573;52574;52575;52576;52577;52578;52579;52580 52572 9 EGVITVEDGTGLQDELDVVEGMQFDR Unmodified 2850.3229 0.32293322 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 3 3 3 2 2 1 1 54.861 53.42 2;3 7.6291E-144 26128 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 387.72 383.33 3282300000 310100000 248240000 272190000 12438000 15728000 15074000 178290000 207990000 174510000 7961200 9433400 8926700 237930000 274750000 244270000 0 0 0 355780000 340830000 347970000 7944000 5290700 6667300 4619 240 4500 86374;86375;86376;86377;86378;86379;86380;86381;86382;86383;86384;86385;86386;86387;86388;86389;86390;86391;86392;86393;86394;86395;86396;86397;86398;86399;86400;86401;86402;86403;86404;86405;86406;86407;86408;86409;86410;86411;86412;86413 52581;52582;52583;52584;52585;52586;52587;52588;52589;52590;52591;52592;52593;52594;52595;52596;52597;52598;52599;52600;52601;52602;52603;52604;52605 52590 25 EGVLDVIDK Unmodified 986.52843 0.52842638 1775 P75809 ybjI Flavin mononucleotide phosphatase YbjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.912 35.255 2 0.00086933 17032 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.136 97.93 213450000 15410000 13042000 10114000 0 0 0 19023000 16264000 18604000 0 0 0 13637000 17519000 17089000 0 0 0 24466000 23444000 24843000 0 0 0 4620 1775 4501 86414;86415;86416;86417;86418;86419;86420;86421;86422;86423;86424;86425 52606;52607;52608;52609;52610;52611;52612;52613;52614 52607 9 EGVLYEMEGR Unmodified 1181.5387 0.53867349 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.236 28.88 2 0.00019317 13492 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.98 134.4 160910000 18573000 17127000 14122000 0 0 0 11929000 11374000 14040000 0 0 0 11423000 10005000 2886000 0 0 0 16717000 17669000 15049000 0 0 0 4621 953 4502 86426;86427;86428;86429;86430;86431;86432;86433;86434;86435;86436;86437 52615;52616;52617;52618;52619;52620 52617 6 EGVMIGAGAK Unmodified 931.4797 0.47970205 511 P0A9D4 cysE Serine acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 17.102 17.859 2 0.0059346 6416 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.208 55.222 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4622 511 4503 86438;86439;86440;86441 52621;52622;52623;52624 52624 4 EGVNSTESGLQFR Unmodified 1422.6739 0.67392142 533 P0A9L3 fklB FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.118 24.142 2 5.2774E-40 10491 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 275.13 268 4970600000 334570000 332500000 303420000 5722900 4246200 4235700 464800000 509400000 484300000 7593600 7845200 6697500 366850000 322400000 311400000 3452000 2033900 2713700 549660000 499940000 446810000 0 0 0 4623 533 4504 86442;86443;86444;86445;86446;86447;86448;86449;86450;86451;86452;86453;86454;86455;86456;86457;86458;86459;86460;86461;86462 52625;52626;52627;52628;52629;52630;52631;52632;52633;52634;52635;52636;52637;52638;52639;52640;52641;52642;52643 52640 19 EGVQEDILEILLNLK Unmodified 1724.956 0.95601651 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 2 1 3 2 3 4 3 4 3 3 3 2 2 3 4 2 4 3 4 4 56.281 55 2;3 3.8352E-20 22001 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 263.29 254.8 42541000000 125200000 108860000 91899000 39671000 27327000 30535000 58734000 15428000 58142000 2413300000 2822900000 2223900000 150130000 122780000 96921000 8688400000 7164800000 7795600000 135030000 131790000 118060000 3694200000 3137400000 3290600000 4624 383 4505 86463;86464;86465;86466;86467;86468;86469;86470;86471;86472;86473;86474;86475;86476;86477;86478;86479;86480;86481;86482;86483;86484;86485;86486;86487;86488;86489;86490;86491;86492;86493;86494;86495;86496;86497;86498;86499;86500;86501;86502;86503;86504;86505;86506;86507;86508;86509;86510;86511;86512;86513;86514;86515;86516;86517;86518;86519;86520;86521;86522;86523;86524;86525;86526;86527;86528;86529;86530;86531;86532;86533 52644;52645;52646;52647;52648;52649;52650;52651;52652;52653;52654;52655;52656;52657;52658;52659;52660;52661;52662;52663;52664;52665;52666;52667;52668;52669;52670;52671;52672;52673;52674;52675;52676;52677;52678;52679;52680;52681;52682;52683;52684;52685;52686;52687;52688;52689;52690;52691;52692;52693;52694;52695;52696;52697;52698 52658 55 EGVQEDILEILLNLKGLAVR Unmodified 2221.2682 0.26818294 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 55.919 55.974 3 5.1995E-07 21276 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 99.34 99.34 74841000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18357000 23224000 33260000 0 0 0 0 0 0 4625 383 4506 86534;86535;86536 52699 52699 1 EGVQIQNENQTLASITFQNYFR Unmodified 2599.2667 0.26667939 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 53.078 51.708 3 8.6351E-05 18784 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 79.467 76.89 9642700 0 0 0 0 3029100 2663600 0 0 0 0 0 0 0 0 0 0 0 0 3950000 0 0 0 0 0 4626 1057 4507 86537;86538;86539 52700;52701 52701 2 EGVSKDDAEALK Unmodified 1260.6198 0.61976058 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 2 1 2 1 1 2 1 2 1 1 2 1 1 1 2 2 1 12.374 13.104 2;3 1.8397E-08 3772 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 174.77 141.93 1015300000 182240000 157210000 141080000 2800100 2697900 2896000 29413000 34805000 70436000 4113700 4930300 3243800 36374000 79834000 36229000 0 0 0 47899000 50186000 120590000 5062000 3239600 0 4627 351 4508 86540;86541;86542;86543;86544;86545;86546;86547;86548;86549;86550;86551;86552;86553;86554;86555;86556;86557;86558;86559;86560;86561;86562;86563;86564;86565;86566;86567;86568;86569 52702;52703;52704;52705 52704 4 EGVSKDDAEALKK Unmodified 1388.7147 0.7147236 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 2 3 2 3 3 3 2 2 3 2 4 3 2 2 2 2 2 2 11.409 11.959 2;3 3.9669E-40 2923 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 290.61 222.39 20257000000 2295700000 2020100000 2183900000 228330000 218360000 279110000 945940000 134940000 140950000 586310000 540250000 512980000 1165800000 1106500000 1038000000 546780000 385290000 480890000 1516100000 1310700000 1472800000 334120000 407250000 406050000 4628 351 4509 86570;86571;86572;86573;86574;86575;86576;86577;86578;86579;86580;86581;86582;86583;86584;86585;86586;86587;86588;86589;86590;86591;86592;86593;86594;86595;86596;86597;86598;86599;86600;86601;86602;86603;86604;86605;86606;86607;86608;86609;86610;86611;86612;86613;86614;86615;86616;86617;86618;86619;86620;86621;86622;86623;86624;86625;86626 52706;52707;52708;52709;52710;52711;52712;52713;52714;52715;52716;52717;52718;52719;52720;52721;52722;52723;52724;52725;52726;52727;52728;52729;52730;52731;52732;52733;52734;52735;52736;52737;52738;52739;52740;52741;52742;52743;52744;52745;52746;52747;52748;52749;52750;52751;52752;52753 52751 48 EGVTALNR Unmodified 858.45593 0.45593014 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.128 14.688 2 0.0019937 3882 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 104.21 74.899 323540000 25438000 21071000 20472000 0 0 1678800 69793000 31691000 70162000 4595100 4583100 6350500 7528500 0 0 0 0 0 43548000 0 0 6068100 4848500 5709500 4629 1197 4510 86627;86628;86629;86630;86631;86632;86633;86634;86635;86636;86637;86638;86639;86640;86641 52754;52755;52756;52757;52758;52759;52760;52761 52755 8 EGVTGWADTTMLHSEAK Unmodified 1831.8411 0.8410631 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 31.906 30.767 3 5.5261E-05 14441 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.837 75.594 560090000 193000000 196720000 170370000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4630 1816 4511 86642;86643;86644 52762;52763 52763 2 EGVVFLLWGSHAQK Unmodified 1569.8304 0.83036248 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 44.551 42.996 3 0.0046678 21324 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.326 56.96 73940000 0 2145200 15482000 0 0 0 21814000 21569000 0 0 0 0 0 10423000 0 0 0 0 0 0 2507800 0 0 0 4631 1078 4512 86645;86646;86647;86648;86649;86650 52764;52765 52765 1 EGVVVPPVPDQEPEA Unmodified 1560.7672 0.7671531 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 42.162 40.267 2 0.00017844 19860 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.5 107.48 340240000 22403000 21221000 18558000 1990200 2047100 1589200 23493000 24781000 20286000 5667400 7103600 7089900 28330000 24725000 22609000 0 0 0 27386000 28962000 30290000 7356400 7534300 6822600 4632 547 4513 86651;86652;86653;86654;86655;86656;86657;86658;86659;86660;86661;86662;86663;86664;86665;86666;86667;86668;86669;86670;86671;86672 52766;52767;52768;52769;52770;52771;52772;52773;52774;52775;52776;52777;52778;52779 52774 14 EGWCLYHLGCK Unmodified 1421.622 0.62202597 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 0 By MS/MS 1 33.562 30.86 3 0.04656 12174 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 51.092 49.325 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4633 1739 4514 86673 52780 52780 1 EGYETLLNTDLR Unmodified 1422.6991 0.69907354 55 P00944 xylA Xylose isomerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 40.438 38.997 2 0.0012619 18732 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.887 61.84 25923000 3005100 0 14851000 0 0 0 0 0 0 0 0 0 1613700 3942100 2510500 0 0 0 0 0 0 0 0 0 4634 55 4515 86674;86675;86676;86677;86678 52781 52781 1 EGYFCLDSR Unmodified 1145.4812 0.48115861 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.419 30.063 2 0.0001093 13515 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 134.48 130.54 1536300000 111560000 114530000 94427000 0 0 0 154940000 132330000 140000000 0 0 0 103680000 106370000 120370000 0 0 0 158790000 152710000 146620000 0 0 0 4635 63 4516 86679;86680;86681;86682;86683;86684;86685;86686;86687;86688;86689;86690 52782;52783;52784;52785;52786;52787;52788;52789;52790;52791;52792 52791 11 EGYHQDWNTLIYNYGR Unmodified 2027.9126 0.91258856 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.481 38.795 3 0.022712 19332 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 31.876 31.698 41822000 0 4814100 3513800 0 0 0 7429700 7535800 9240700 0 0 0 2780100 1733500 2849000 0 0 0 0 0 1924900 0 0 0 4636 169 4517 86691;86692;86693;86694;86695;86696;86697;86698;86699 52793;52794 52793 0 EHALAWK Unmodified 853.44464 0.44463717 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.728 14.594 2 0.0015084 4722 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.75 118.68 178630000 53504000 43996000 43684000 0 0 0 3395900 3159700 3361400 0 0 0 4914500 3756300 4130200 0 0 0 5286100 5019500 4422800 0 0 0 4637 1112 4518 86700;86701;86702;86703;86704;86705;86706;86707;86708;86709;86710;86711 52795;52796;52797 52795 3 EHAPWALTDYGFK Unmodified 1533.7252 0.72522871 1337 P30126 leuD 3-isopropylmalate dehydratase small subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 38.82 37.365 2 2.4515E-07 18129 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.36 116.47 61804000 30734000 0 31070000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4638 1337 4519 86712;86713;86714 52798;52799;52800 52799 3 EHEDTLAGIEATGVTQR Unmodified 1825.8806 0.88061973 631 P0AB61 yciN Protein YciN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 26.545 25.426 2;3 8.0547E-62 11517 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 353.96 350.42 3230400000 313580000 352920000 325850000 0 3307700 3720900 293470000 244350000 264090000 7939000 11618000 8352700 261610000 250060000 240180000 4607800 3358600 3967800 205800000 210900000 213680000 2493700 2189900 2404800 4639 631 4520 86715;86716;86717;86718;86719;86720;86721;86722;86723;86724;86725;86726;86727;86728;86729;86730;86731;86732;86733;86734;86735;86736;86737;86738;86739;86740;86741;86742;86743;86744;86745;86746;86747;86748;86749;86750;86751;86752;86753 52801;52802;52803;52804;52805;52806;52807;52808;52809;52810;52811;52812;52813;52814;52815;52816;52817;52818;52819;52820;52821;52822;52823;52824;52825 52809 25 EHEGEIITGVVK Unmodified 1309.6878 0.68778057 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 21.095 21.189 2;3 2.1001E-39 8763 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 274.31 265.85 7002300000 232930000 204270000 216830000 0 0 0 114140000 103740000 123280000 227880000 337720000 329770000 183370000 180690000 173580000 757590000 633550000 623230000 189100000 198060000 182510000 598640000 709500000 681960000 4640 935 4521 86754;86755;86756;86757;86758;86759;86760;86761;86762;86763;86764;86765;86766;86767;86768;86769;86770;86771;86772;86773;86774;86775;86776;86777;86778;86779;86780;86781;86782;86783;86784;86785;86786;86787;86788;86789;86790;86791;86792;86793;86794;86795 52826;52827;52828;52829;52830;52831;52832;52833;52834;52835;52836;52837;52838;52839;52840;52841;52842;52843;52844;52845;52846;52847;52848;52849;52850;52851;52852;52853;52854;52855;52856;52857;52858;52859;52860;52861;52862;52863;52864;52865;52866;52867;52868;52869;52870;52871 52841 46 EHEGEIITGVVKK Unmodified 1437.7827 0.78274359 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 16.07 16.17 2;3 3.1986E-31 4433 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 305.7 300.76 700690000 0 0 0 378940 0 0 0 0 0 45658000 42756000 51422000 0 0 0 123580000 71037000 97625000 0 0 0 85761000 85922000 96547000 4641 935 4522 86796;86797;86798;86799;86800;86801;86802;86803;86804;86805;86806;86807;86808;86809;86810;86811;86812;86813;86814 52872;52873;52874;52875;52876;52877;52878;52879;52880;52881;52882;52883;52884;52885;52886;52887 52883 16 EHFAGLCK Unmodified 960.44874 0.44873627 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.076 13.942 2 0.00033509 4350 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.04 145.04 404350000 41417000 41912000 37317000 0 0 0 27608000 25017000 29727000 0 0 0 31347000 33370000 34934000 0 0 0 33711000 33899000 34096000 0 0 0 4642 1634 4523 86815;86816;86817;86818;86819;86820;86821;86822;86823;86824;86825;86826 52888 52888 1 EHFFGKYPETAALVADWTDEQIWALNR Unmodified 3206.5461 0.54614872 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 4 4 4 1 1 1 1 3 2 2 1 1 2 2 1 3 3 3 53.687 52.438 3;4;5 2.5973E-66 20930 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 251.32 245.95 23245000000 0 23338000 0 3910700000 3249400000 3986300000 31581000 40058000 31619000 58594000 308710000 292280000 0 0 0 54529000 74618000 71594000 69591000 59995000 37738000 3677400000 3926800000 3340400000 4643 939 4524 86827;86828;86829;86830;86831;86832;86833;86834;86835;86836;86837;86838;86839;86840;86841;86842;86843;86844;86845;86846;86847;86848;86849;86850;86851;86852;86853;86854;86855;86856;86857;86858;86859;86860;86861;86862;86863;86864;86865;86866 52889;52890;52891;52892;52893;52894;52895;52896;52897;52898;52899;52900;52901;52902;52903;52904;52905;52906;52907;52908;52909;52910;52911;52912;52913;52914;52915;52916;52917 52902 29 EHFFINISLDTAR Unmodified 1561.7889 0.7888916 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.752 41.111 3 2.5261E-05 20038 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.466 73.414 62254000 4162800 2766200 2666300 0 0 0 5708500 4638200 5255700 0 0 0 5518300 3521200 4748100 0 0 0 6974500 9204100 7090100 0 0 0 4644 1819 4525 86867;86868;86869;86870;86871;86872;86873;86874;86875;86876;86877;86878 52918;52919;52920;52921;52922;52923;52924;52925 52918 0 EHFPWEK Unmodified 971.45012 0.45011648 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.21 23.19 2 0.001917 10356 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.52 76.825 608600000 59556000 43107000 45244000 1177600 1090400 1045000 89674000 74880000 74473000 4682100 3903700 3625400 32239000 26415000 27566000 0 0 0 40342000 39094000 40481000 0 0 0 4645 388 4526 86879;86880;86881;86882;86883;86884;86885;86886;86887;86888;86889;86890;86891;86892;86893;86894;86895;86896 52926;52927;52928;52929;52930;52931;52932;52933;52934;52935;52936;52937 52928 12 EHFTSVVGADQDDAEMLAEELR Unmodified 2461.1067 0.10673286 738 P0ACP1 cra Catabolite repressor/activator yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 45.255 43.825 3 1.4366E-23 21720 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 180.08 177.47 140630000 17936000 13966000 15004000 0 0 0 16482000 12307000 17459000 0 0 0 0 6710000 6630400 0 0 0 10367000 13707000 10061000 0 0 0 4646 738 4527 86897;86898;86899;86900;86901;86902;86903;86904;86905;86906;86907 52938;52939;52940;52941 52938 4 EHGAVILTAHEVTGLIR Unmodified 1815.0003 0.0002813566 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 3 3 3 1 1 1 3 3 3 3 2 3 1 1 32.737 31.236 2;3;4 2.1143E-39 15104 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 248.77 241.57 782070000 3497500 0 4048900 0 0 0 179360000 125350000 127460000 8054400 4700400 8181400 69212000 62327000 57209000 0 0 0 50183000 40279000 40410000 0 0 1793900 4647 506 4528 86908;86909;86910;86911;86912;86913;86914;86915;86916;86917;86918;86919;86920;86921;86922;86923;86924;86925;86926;86927;86928;86929;86930;86931;86932;86933;86934;86935;86936;86937;86938;86939;86940 52942;52943;52944;52945;52946;52947;52948;52949;52950;52951;52952 52945 8 EHGDLKENAEYHAAR Unmodified 1738.8023 0.80230983 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 2 2 2 2 2 2 2 1 2 2 2 2 10.926 11.643 3;4 2.3511E-20 2866 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 207.04 199.72 1282300000 28975000 24381000 74340000 0 0 0 132660000 132920000 134040000 0 0 0 109990000 119970000 92851000 0 6127500 8795500 139770000 127860000 149630000 0 0 0 4648 288 4529 86941;86942;86943;86944;86945;86946;86947;86948;86949;86950;86951;86952;86953;86954;86955;86956;86957;86958;86959;86960;86961;86962;86963;86964;86965 52953;52954;52955;52956;52957;52958;52959;52960;52961;52962;52963;52964 52954 12 EHGEAHIAAGAK Unmodified 1189.584 0.5839842 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 8.0907 8.8978 2;3 2.2071E-06 2084 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.89 109.58 58292000 6088700 5260900 6908900 0 0 0 0 0 0 0 0 0 4410400 4256400 0 0 0 0 9168000 12171000 10028000 0 0 0 4649 505 4530 86966;86967;86968;86969;86970;86971;86972;86973;86974;86975;86976;86977;86978;86979;86980;86981;86982 52965;52966;52967;52968;52969;52970;52971;52972;52973;52974;52975 52968 11 EHGMMANIEIKPTTGTGPLTGK Unmodified 2282.1399 0.13988766 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 3 2 3 2 3 3 3 3 29.217 27.955 2;3;4 8.0671E-35 13174 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 205.24 200.89 1608000000 36652000 31636000 14520000 0 0 0 114620000 107170000 117120000 0 0 0 128900000 140700000 145880000 0 0 0 259320000 248150000 263340000 0 0 0 4650 1065 4531 86983;86984;86985;86986;86987;86988;86989;86990;86991;86992;86993;86994;86995;86996;86997;86998;86999;87000;87001;87002;87003;87004;87005;87006;87007;87008;87009;87010;87011 52976;52977;52978;52979;52980;52981;52982;52983;52984;52985;52986;52987;52988;52989;52990;52991;52992;52993;52994 52980 19 EHGTQHSDAILTR Unmodified 1463.7117 0.71170391 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 1 2 2 2 11.303 12.153 2;3 1.1423E-08 2998 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 157.74 153.72 857080000 158730000 39369000 136140000 0 0 0 0 56163000 56851000 0 0 0 76560000 76518000 18472000 0 0 0 72374000 77979000 87930000 0 0 0 4651 148 4532 87012;87013;87014;87015;87016;87017;87018;87019;87020;87021;87022;87023;87024;87025;87026;87027;87028;87029;87030 52995;52996;52997;52998;52999;53000;53001;53002;53003;53004 53003 10 EHGVPELAVPR Unmodified 1202.6408 0.6407708 1359 P31119 aas Bifunctional protein Aas;2-acylglycerophosphoethanolamine acyltransferase;Acyl-[acyl-carrier-protein] synthetase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.291 22.453 3 0.00033834 9898 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 65.056 58.358 56073000 0 3786100 0 0 0 0 5360300 4655500 6815700 0 2786100 1791800 4717200 3848100 3196200 0 0 0 5624800 6020500 6438000 0 0 1032900 4652 1359 4533 87031;87032;87033;87034;87035;87036;87037;87038;87039;87040;87041;87042;87043 53005;53006 53005 1 EHGYETVVMGASFR Unmodified 1581.7246 0.72457678 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 1 2 1 3 2 2 1 3 3 2 3 3 3 30.187 28.868 2;3 4.2738E-56 12572 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 306.48 302.46 6595800000 401400000 386920000 335530000 1551000 1881300 1510200 728780000 684090000 718800000 0 1431700 0 552650000 518410000 456750000 0 0 0 613390000 572910000 619760000 0 0 0 4653 402 4534 87044;87045;87046;87047;87048;87049;87050;87051;87052;87053;87054;87055;87056;87057;87058;87059;87060;87061;87062;87063;87064;87065;87066;87067;87068;87069;87070;87071;87072;87073;87074;87075;87076;87077;87078;87079;87080;87081 53007;53008;53009;53010;53011;53012;53013;53014;53015;53016;53017;53018;53019;53020;53021;53022;53023;53024;53025;53026;53027;53028;53029;53030;53031;53032;53033;53034;53035;53036;53037;53038;53039;53040;53041;53042;53043;53044;53045;53046;53047;53048 53042 38 EHGYETVVMGASFR Oxidation (M) 1597.7195 0.7194914 402 P0A870 talB Transaldolase B yes yes 0 1 0 By matching By MS/MS By MS/MS By matching 1 2 1 1 24.177 23.13 2;3 0.0036958 10610 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.82 47.794 21789000 0 0 0 0 0 0 0 6386900 8376300 0 0 0 0 0 3195900 0 0 0 3829900 0 0 0 0 0 4654 402 4534 87082;87083;87084;87085;87086 53049;53050;53051 53049 194 1 EHIDGLWPVLTR Unmodified 1434.7619 0.76194857 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.929 40.231 2;3 1.9042E-09 19508 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 207.34 203.04 632240000 137370000 132350000 118300000 0 0 0 41984000 41041000 34847000 0 0 0 20791000 14887000 22566000 0 0 0 19235000 22696000 26175000 0 0 0 4655 1091 4535 87087;87088;87089;87090;87091;87092;87093;87094;87095;87096;87097;87098;87099;87100;87101;87102;87103;87104;87105;87106;87107;87108;87109;87110 53052;53053;53054;53055;53056;53057;53058;53059;53060;53061;53062;53063;53064;53065;53066;53067;53068;53069 53065 18 EHIHIDGMPLHIIDTAGLR Unmodified 2137.1102 0.11024251 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 1 1 1 1 1 38.929 37.302 3;4 1.4321E-10 18007 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 131.25 127.75 294550000 9721100 40898000 52366000 0 0 0 0 44447000 11258000 0 0 0 26774000 30211000 30896000 0 0 0 0 11786000 36191000 0 0 0 4656 1256 4536 87111;87112;87113;87114;87115;87116;87117;87118;87119;87120;87121;87122;87123 53070;53071;53072;53073;53074;53075;53076;53077 53074 5 EHIINLAR Unmodified 964.54541 0.54541385 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By MS/MS 1 15.961 16.976 2 0.14295 5615 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 50.025 42.334 2845000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2845000 0 0 0 0 0 0 0 0 0 4657 1932 4537 87124 53078 53078 0 EHIKLHNMEDLFGEVMVPTEEVVEIR Unmodified 3092.5311 0.53109228 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 1 By MS/MS 1 51.272 49.572 4 8.395E-11 20036 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 128.17 125.81 18368000 0 0 0 0 0 0 0 0 0 18368000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4658 936 4538 87125 53079 53079 1 EHILLGR Unmodified 836.48684 0.48683634 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 15.82 16.38 2 0.00023343 5300 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 163.34 82.844 41762000000 3117000000 3586800000 3682200000 67359000 74748000 59391000 3475300000 3572500000 3443600000 31321000 25973000 34606000 3881300 3375500000 3239000000 27805000 14840000 13700000 4751900000 4526500000 4557700000 27648000 26147000 26819000 4659 1048 4539 87126;87127;87128;87129;87130;87131;87132;87133;87134;87135;87136;87137;87138;87139;87140;87141;87142;87143;87144;87145;87146;87147;87148;87149;87150;87151;87152;87153;87154;87155;87156 53080;53081;53082;53083;53084;53085;53086;53087;53088;53089;53090;53091;53092;53093;53094;53095;53096;53097;53098;53099;53100;53101;53102;53103;53104;53105;53106;53107;53108;53109;53110;53111;53112;53113;53114;53115;53116;53117;53118;53119;53120 53110 39 EHIPVLVYGPK Unmodified 1250.7023 0.70230842 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 28.801 27.42 2;3 0.00012589 12561 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.692 93.441 5827400000 531730000 491840000 393510000 1211500 1061400 1458000 776660000 765680000 716100000 0 2889400 2910000 329520000 335020000 331960000 0 0 0 390780000 400430000 354640000 0 0 0 4660 256 4540 87157;87158;87159;87160;87161;87162;87163;87164;87165;87166;87167;87168;87169;87170;87171;87172;87173;87174;87175;87176;87177;87178;87179;87180;87181;87182;87183;87184;87185;87186;87187 53121;53122;53123;53124;53125;53126;53127;53128;53129;53130;53131;53132;53133;53134;53135;53136;53137;53138;53139;53140;53141;53142;53143;53144 53133 24 EHLAAMDYLR Unmodified 1217.5863 0.58629239 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 28.549 27.267 2;3 9.8456E-07 12001 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 133.13 129.79 1738300000 92966000 82532000 73338000 8385300 7336100 9478500 116260000 109830000 110720000 91924000 84471000 79959000 70060000 75085000 85568000 61497000 48987000 57779000 111120000 116020000 93603000 55615000 50679000 45044000 4661 1057 4541 87188;87189;87190;87191;87192;87193;87194;87195;87196;87197;87198;87199;87200;87201;87202;87203;87204;87205;87206;87207;87208;87209;87210;87211;87212;87213;87214;87215;87216;87217;87218;87219;87220;87221;87222;87223;87224;87225;87226;87227;87228;87229;87230;87231;87232;87233;87234;87235 53145;53146;53147;53148;53149;53150;53151;53152;53153;53154;53155;53156;53157;53158;53159;53160;53161;53162;53163;53164;53165;53166;53167;53168;53169;53170;53171;53172;53173;53174;53175;53176;53177;53178;53179;53180;53181;53182;53183;53184;53185;53186;53187 53184 41 EHLGLCQASAVVMTQDDLPFAK Unmodified 2429.1719 0.17191607 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.316 43.691 3 1.798E-22 21615 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 177 173.99 643940000 50804000 41560000 40276000 1901200 2072300 1943000 61168000 56678000 54793000 8003500 5716300 5552100 41722000 50779000 48285000 0 0 0 55905000 59306000 46435000 3705800 4474400 2860500 4662 1185 4542 87236;87237;87238;87239;87240;87241;87242;87243;87244;87245;87246;87247;87248;87249;87250;87251;87252;87253;87254;87255;87256 53188;53189;53190;53191;53192;53193;53194;53195;53196;53197;53198;53199;53200;53201;53202 53191 13 EHLGTGDVK Unmodified 954.47706 0.47705951 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.831 11.647 2 8.3103E-06 2899 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 169.09 150.36 679100000 62104000 51811000 50147000 0 0 0 25701000 27993000 31126000 0 0 0 49080000 40421000 39805000 0 0 0 104230000 95362000 101320000 0 0 0 4663 937 4543 87257;87258;87259;87260;87261;87262;87263;87264;87265;87266;87267;87268 53203;53204;53205;53206;53207;53208;53209 53203 7 EHLGYPELPATIASK Unmodified 1624.8461 0.84607213 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.411 31.071 2;3 2.3112E-11 15015 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 162.68 158.35 455110000 48758000 37209000 49048000 0 0 0 40305000 39766000 35264000 0 0 0 28717000 26354000 26927000 0 0 0 36933000 40619000 45213000 0 0 0 4664 328 4544 87269;87270;87271;87272;87273;87274;87275;87276;87277;87278;87279;87280;87281;87282;87283;87284;87285;87286;87287;87288;87289;87290;87291;87292 53210;53211;53212;53213;53214;53215;53216;53217;53218;53219;53220;53221;53222;53223;53224;53225 53212 16 EHLIQFGGAEPVEGK Unmodified 1609.81 0.81002097 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 1 3 2 2 2 1 1 1 1 2 1 26.75 25.567 2;3 4.9116E-46 11990 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 289.38 279.49 524490000 50205000 13292000 54044000 0 0 0 101270000 86781000 75533000 0 0 0 14577000 19001000 14567000 0 0 0 11626000 69060000 14533000 0 0 0 4665 285 4545 87293;87294;87295;87296;87297;87298;87299;87300;87301;87302;87303;87304;87305;87306;87307;87308;87309;87310;87311 53226;53227;53228;53229;53230;53231;53232;53233;53234;53235 53227 10 EHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDK Unmodified 3664.9366 0.93656547 285 P0A6V8 glk Glucokinase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.067 38.402 6 3.2078E-12 18981 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 92.91 91.365 313120000 16359000 19911000 13943000 0 0 0 39638000 41963000 39123000 0 0 0 17654000 32404000 15743000 0 0 0 25212000 27712000 23454000 0 0 0 4666 285 4546 87312;87313;87314;87315;87316;87317;87318;87319;87320;87321;87322;87323 53236;53237;53238;53239;53240 53237 5 EHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKR Unmodified 3821.0377 0.037676501 285 P0A6V8 glk Glucokinase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 1 2 1 1 2 2 1 2 2 1 1 37.281 35.626 5;6 1.1449E-12 17588 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 103.96 101.1 306680000 20870000 10397000 17947000 0 0 0 18985000 24741000 56743000 0 0 0 32021000 16522000 27200000 0 0 0 44895000 13445000 22910000 0 0 0 4667 285 4547 87324;87325;87326;87327;87328;87329;87330;87331;87332;87333;87334;87335;87336;87337;87338;87339;87340;87341 53241;53242 53242 2 EHLLKPLQQVSGPLGGR Unmodified 1828.0319 0.031915836 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 2 2 1 3 3 3 1 1 2 1 1 2 27.237 25.735 2;3;4 1.4259E-11 9580 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 155.37 155.34 512090000 16234000 8618400 0 0 0 0 18933000 20722000 12280000 138450000 124200000 94754000 6655400 9875900 14440000 0 0 0 13141000 14042000 19749000 0 0 0 4668 497 4548 87342;87343;87344;87345;87346;87347;87348;87349;87350;87351;87352;87353;87354;87355;87356;87357;87358;87359;87360;87361;87362;87363;87364;87365 53243;53244;53245;53246;53247;53248;53249;53250;53251;53252 53248 9 EHLLLTR Unmodified 880.51305 0.51305109 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.834 16.65 2 0.0014724 5824 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 129.39 121.68 173550000 15168000 18438000 13715000 0 0 0 13918000 13952000 15878000 0 0 0 12326000 12944000 11253000 0 0 0 13493000 17120000 15341000 0 0 0 4669 899 4549 87366;87367;87368;87369;87370;87371;87372;87373;87374;87375;87376;87377 53253;53254;53255;53256;53257;53258;53259;53260 53257 4 EHLLQLPER Unmodified 1133.6193 0.61930707 1093 P14081 selB Selenocysteine-specific elongation factor yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 23.115 22.513 3 0.02004 9666 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 44.704 37.442 31130000 6786700 8083900 5339400 0 0 0 0 0 0 0 0 0 3006700 1843200 0 0 0 0 2575700 0 3494700 0 0 0 4670 1093 4550 87378;87379;87380;87381;87382;87383;87384 53261 53261 1 EHLQMPEQR Unmodified 1166.5502 0.55024123 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 13.459 14.092 2;3 7.8697E-08 4075 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 187.78 172.52 752600000 59300000 46325000 50319000 18570000 17122000 21188000 30978000 12121000 26344000 14997000 12619000 14850000 40257000 38335000 37336000 2007500 2956600 3491800 73529000 71881000 70690000 30665000 28440000 28277000 4671 150 4551 87385;87386;87387;87388;87389;87390;87391;87392;87393;87394;87395;87396;87397;87398;87399;87400;87401;87402;87403;87404;87405;87406;87407;87408;87409;87410;87411;87412;87413;87414;87415;87416;87417;87418;87419;87420;87421;87422;87423;87424;87425;87426;87427;87428 53262;53263;53264;53265;53266;53267;53268;53269;53270;53271;53272;53273;53274;53275;53276;53277;53278;53279;53280;53281;53282;53283;53284;53285 53282 21 EHLSQEVLGK Unmodified 1138.5982 0.59823728 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 15.51 16.066 2;3 9.2045E-07 5407 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 190.88 174.34 1449000000 152410000 179230000 162750000 4804300 5058100 4874900 140430000 144630000 146030000 5698900 5398500 6515800 63489000 52443000 55983000 16482000 13984000 13405000 85977000 92377000 85349000 2761200 4198700 4686800 4672 841 4552 87429;87430;87431;87432;87433;87434;87435;87436;87437;87438;87439;87440;87441;87442;87443;87444;87445;87446;87447;87448;87449;87450;87451;87452;87453;87454;87455;87456;87457;87458;87459;87460;87461;87462;87463;87464;87465;87466;87467;87468;87469;87470;87471;87472;87473 53286;53287;53288;53289;53290;53291;53292;53293;53294;53295;53296;53297;53298;53299;53300;53301;53302;53303;53304;53305;53306;53307;53308;53309;53310;53311 53296 24 EHLSQEVLGKR Unmodified 1294.6993 0.69934831 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 13.86 13.849 2;3 4.3129E-10 3414 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 211.02 201.07 86538000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28411000 28601000 29526000 0 0 0 0 0 0 4673 841 4553 87474;87475;87476;87477;87478;87479 53312;53313;53314;53315 53313 4 EHNAEVTGFIR Unmodified 1271.6258 0.62584901 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 4 4 2 2 2 8 6 8 1 1 1 5 4 5 2 1 1 2 5 6 2 2 2 20.824 20.901 2;3 1.7433E-34 8007 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 274.95 270.34 23058000000 1443700000 1337000000 1386300000 23574000 20112000 26412000 2536700000 2388300000 2342800000 22099000 23207000 18651000 1691100000 1499700000 1371900000 17867000 13963000 12545000 1965200000 2231900000 2629300000 16782000 22510000 16192000 4674 267 4554 87480;87481;87482;87483;87484;87485;87486;87487;87488;87489;87490;87491;87492;87493;87494;87495;87496;87497;87498;87499;87500;87501;87502;87503;87504;87505;87506;87507;87508;87509;87510;87511;87512;87513;87514;87515;87516;87517;87518;87519;87520;87521;87522;87523;87524;87525;87526;87527;87528;87529;87530;87531;87532;87533;87534;87535;87536;87537;87538;87539;87540;87541;87542;87543;87544;87545;87546;87547;87548;87549;87550;87551;87552;87553;87554;87555;87556;87557;87558;87559 53316;53317;53318;53319;53320;53321;53322;53323;53324;53325;53326;53327;53328;53329;53330;53331;53332;53333;53334;53335;53336;53337;53338;53339;53340;53341;53342;53343;53344;53345;53346;53347;53348;53349;53350;53351;53352;53353;53354;53355;53356;53357;53358;53359;53360;53361;53362;53363;53364;53365;53366;53367;53368;53369;53370;53371;53372;53373;53374;53375;53376;53377;53378;53379;53380;53381;53382;53383;53384;53385;53386;53387;53388;53389;53390;53391;53392;53393;53394;53395;53396;53397;53398;53399;53400;53401;53402;53403;53404;53405;53406;53407;53408;53409;53410;53411;53412;53413;53414;53415;53416;53417 53381 91 EHPESYYSFMHR Unmodified 1581.6671 0.6670619 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 2 2 3 3 3 21.037 21.353 2;3;4 1.8004E-17 8768 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 171.74 171.74 846860000 106640000 96533000 99380000 0 0 0 98560000 91878000 109430000 0 0 0 35166000 24049000 27377000 0 0 0 52178000 52965000 52712000 0 0 0 4675 313 4555 87560;87561;87562;87563;87564;87565;87566;87567;87568;87569;87570;87571;87572;87573;87574;87575;87576;87577;87578;87579;87580;87581;87582;87583;87584;87585;87586;87587;87588;87589;87590;87591;87592;87593 53418;53419;53420;53421;53422;53423;53424;53425;53426;53427;53428;53429;53430;53431;53432;53433;53434;53435;53436;53437;53438;53439;53440;53441;53442;53443 53425 23 EHPFVQALIDEYR Unmodified 1615.7995 0.79945628 1297 P27278 nadR Trifunctional NAD biosynthesis/regulator protein NadR;Transcriptional regulator NadR;Nicotinamide mononucleotide adenylyltransferase;Ribosylnicotinamide kinase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 41.791 40.044 3 0.00048639 19483 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 47.47 35.679 76046000 0 0 17355000 758760 0 0 8350800 9253800 9143800 0 0 0 0 6127500 6926700 0 0 0 6500900 5399400 6229500 0 0 0 4676 1297 4556 87594;87595;87596;87597;87598;87599;87600;87601;87602;87603 53444;53445 53445 1 EHPGWEIVTTQFGYNDATK Unmodified 2192.0174 0.017447563 1821 P76142 lsrB Autoinducer 2-binding protein LsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 40.67 38.99 2;3 1.977E-110 18819 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 371.18 361.39 555860000 201670000 177930000 162710000 379140 0 0 3827500 3793900 5541700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4677 1821 4557 87604;87605;87606;87607;87608;87609;87610;87611;87612;87613 53446;53447;53448;53449;53450;53451 53451 6 EHPLHCAGSFK Unmodified 1281.5924 0.5924404 304 P0A729 yceF Maf-like protein YceF yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.232 12.064 3 0.031542 3139 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 42.629 37.145 352070000 49716000 44879000 30483000 0 0 0 29832000 31671000 36630000 0 0 0 23601000 17177000 23726000 0 0 0 24362000 20183000 19806000 0 0 0 4678 304 4558 87614;87615;87616;87617;87618;87619;87620;87621;87622;87623;87624;87625 53452;53453 53453 2 EHPVLLNR Unmodified 976.54541 0.54541385 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 2 1 1 1 1 1 1 14.062 14.574 2 9.831E-05 3753 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 161.47 154.32 11831000000 162690000 162960000 160090000 6204100 7123400 8037700 160400000 144270000 143850000 846850000 654080000 663660000 164980000 142330000 125470000 2209500000 1073200000 1033700000 230310000 278160000 241700000 1072200000 1058100000 1080700000 4679 458 4559 87626;87627;87628;87629;87630;87631;87632;87633;87634;87635;87636;87637;87638;87639;87640;87641;87642;87643;87644;87645;87646;87647;87648;87649;87650;87651;87652;87653 53454;53455;53456;53457;53458;53459;53460;53461;53462;53463;53464;53465;53466;53467;53468;53469;53470;53471;53472;53473;53474;53475;53476;53477;53478;53479;53480;53481;53482;53483;53484;53485;53486;53487 53463 33 EHTQLPAPLLHSTVMMK Unmodified 1931.9961 0.99612396 1663 P63386 mlaF Probable phospholipid import ATP-binding protein MlaF yes yes 0 0 0 By matching By MS/MS 1 1 32.046 29.646 4 0.11961 11248 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 24.714 20.873 11373000 0 0 0 0 0 0 0 0 0 6357300 0 5015400 0 0 0 0 0 0 0 0 0 0 0 0 4680 1663 4560 87654;87655 53488 53488 1 EHTTEHLR Unmodified 1021.4941 0.49410656 1689 P64581 yqjD Uncharacterized protein YqjD yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.5519 7.2887 2 2.3178E-09 1104 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 215.07 210.96 1370100000 75631000 56870000 45271000 8511800 4674700 6997900 273400000 285580000 274530000 19362000 18654000 16215000 36735000 38134000 33225000 0 0 0 53857000 55702000 55914000 0 4555000 6309400 4681 1689 4561 87656;87657;87658;87659;87660;87661;87662;87663;87664;87665;87666;87667;87668;87669;87670;87671;87672;87673;87674;87675 53489;53490;53491;53492;53493;53494;53495;53496;53497;53498;53499 53492 9 EHVEQILAAQATR Unmodified 1464.7685 0.76849051 250 P0A6I9 coaE Dephospho-CoA kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 3 3 3 3 3 1 2 2 2 2 2 26.304 25.429 2;3 1.6686E-06 9234 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.15 126.29 268550000 24927000 31220000 26199000 0 0 0 31861000 30673000 38742000 0 0 0 7417300 18740000 14865000 0 0 0 15598000 13709000 14602000 0 0 0 4682 250 4562 87676;87677;87678;87679;87680;87681;87682;87683;87684;87685;87686;87687;87688;87689;87690;87691;87692;87693;87694;87695;87696;87697;87698;87699;87700;87701;87702;87703 53500;53501;53502;53503;53504 53504 4 EHVNPGFLEYR Unmodified 1359.6571 0.65714914 1553 P42588 patA Putrescine aminotransferase yes yes 0 0 0 By MS/MS By matching 1 1 25.956 24.453 2 9.861E-05 11316 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.12 108.63 11523000 0 0 0 0 0 0 5690900 0 5832000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4683 1553 4563 87704;87705 53505 53505 1 EHVPNAR Unmodified 821.4144 0.41439968 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 0 By MS/MS 1 7.7122 8.4644 2 0.03116 1818 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.432 59.126 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4684 1058 4564 87706 53506 53506 1 EHVTKPVVGYIAGVTAPK Unmodified 1865.0411 0.041083539 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 1 2 3 3 3 1 1 1 3 3 3 24.851 23.887 2;3;4 8.2904E-46 10870 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 305.4 298.35 10355000000 1325500000 1436200000 1256400000 0 4128800 0 459290000 450070000 474340000 0 1769400 4832200 474090000 455700000 408410000 1742900 1558500 1008000 1235100000 1116100000 1248600000 0 0 0 4685 1013 4565 87707;87708;87709;87710;87711;87712;87713;87714;87715;87716;87717;87718;87719;87720;87721;87722;87723;87724;87725;87726;87727;87728;87729;87730;87731;87732;87733;87734;87735;87736;87737;87738;87739;87740;87741;87742;87743;87744;87745;87746;87747;87748;87749 53507;53508;53509;53510;53511;53512;53513;53514;53515;53516;53517;53518;53519;53520;53521;53522;53523;53524;53525;53526;53527;53528;53529;53530;53531;53532;53533;53534;53535;53536;53537;53538;53539;53540;53541;53542;53543 53512 37 EHYDLGNDLFSR Unmodified 1464.6634 0.66335673 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 32.957 31.338 2;3 2.924E-24 15162 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 247.08 242.79 956780000 64595000 48800000 54521000 1461000 2020500 1940700 212830000 172380000 176930000 12198000 11691000 10162000 26912000 28139000 28557000 0 0 0 28119000 40343000 35188000 0 0 0 4686 522 4566 87750;87751;87752;87753;87754;87755;87756;87757;87758;87759;87760;87761;87762;87763;87764;87765;87766;87767;87768;87769;87770;87771;87772;87773;87774;87775;87776;87777;87778;87779;87780;87781;87782;87783;87784 53544;53545;53546;53547;53548;53549;53550;53551;53552;53553;53554;53555;53556;53557;53558;53559;53560;53561 53550 16 EHYLYWAR Unmodified 1136.5403 0.54032847 1390 P32157 yiiM Protein YiiM yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 25.156 24.2 2 0.030421 10583 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 81.297 65.857 34314000 0 7007300 6774100 0 0 0 0 8717100 0 0 0 0 5106900 0 0 0 0 0 0 6708500 0 0 0 0 4687 1390 4567 87785;87786;87787;87788;87789 53562 53562 0 EIAAELGLSPK Unmodified 1126.6234 0.6233894 1002 P0AGA6 uhpA Transcriptional regulatory protein UhpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.773 31.163 2 0.0012683 14715 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 81.099 27.695 40596000 6609700 6578500 9215100 0 0 0 2976200 2458400 0 1480900 1258800 1148300 0 1089600 1451600 0 0 0 3265300 3063600 0 0 0 0 4688 1002 4568 87790;87791;87792;87793;87794;87795;87796;87797;87798;87799;87800;87801 53563;53564;53565 53564 3 EIAAGNTDLSSR Unmodified 1232.5997 0.59969384 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 15.998 16.985 2 6.2737E-09 4358 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 177.06 164.82 128980000 0 0 0 44184000 41126000 43674000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4689 151 4569 87802;87803;87804 53566;53567;53568 53567 3 EIADGLASAER Unmodified 1130.5568 0.5567664 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.549 21.644 2 3.7769E-10 8778 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.43 153.26 2349000000 60422000 52225000 44218000 6973500 7669800 9086200 197300000 219650000 190610000 0 0 0 225910000 213340000 188290000 0 0 0 297820000 310490000 325010000 0 0 0 4690 642 4570 87805;87806;87807;87808;87809;87810;87811;87812;87813;87814;87815;87816;87817;87818;87819 53569;53570;53571;53572;53573;53574;53575;53576;53577;53578;53579;53580;53581;53582;53583 53578 15 EIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHK Unmodified 4368.2365 0.23651224 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 54.958 53.474 5;6 2.9252E-20 26313 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.85 130.85 5182500000 756260000 737670000 799740000 0 0 0 385800000 356400000 338470000 2288600 0 0 243940000 239350000 210320000 0 0 0 324840000 461760000 325640000 0 0 0 4691 391 4571 87820;87821;87822;87823;87824;87825;87826;87827;87828;87829;87830;87831;87832;87833 53584;53585;53586;53587;53588;53589;53590;53591;53592;53593;53594;53595;53596 53589 13 EIAFEELGSQAR Unmodified 1348.6623 0.6622941 417 P0A8C1 ybjQ UPF0145 protein YbjQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 2 34.344 32.747 2;3 5.796E-13 15868 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 202.2 198.5 639390000 0 0 0 43490000 43658000 45378000 69275000 74449000 63962000 35839000 38081000 40942000 10587000 8408600 10603000 8269000 4589800 4809400 29644000 36113000 29725000 15268000 13468000 12830000 4692 417 4572 87834;87835;87836;87837;87838;87839;87840;87841;87842;87843;87844;87845;87846;87847;87848;87849;87850;87851;87852;87853;87854;87855;87856;87857;87858;87859;87860;87861;87862 53597;53598;53599;53600;53601;53602;53603;53604;53605;53606;53607;53608;53609;53610;53611;53612;53613;53614;53615;53616;53617 53604 18 EIAGGNLANTLTIDGR Unmodified 1613.8373 0.83729835 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 37.992 36.272 2 1.7468E-13 12727 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 165.7 164.79 15373000 0 0 0 5519300 5113000 4740900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4693 151 4573 87863;87864;87865 53618;53619;53620 53618 3 EIAHLTDKPTLK Unmodified 1364.7664 0.76636524 716 P0ACB4 hemG Protoporphyrinogen IX dehydrogenase [menaquinone] yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 1 1 1 1 1 1 2 1 2 1 2 1 1 1 2 2 2 2 2 15.756 16.355 2;3 0.00059377 4746 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 74.21 67.512 168040000 8105200 8483900 6541200 1457700 1668200 1628000 12419000 10633000 15130000 10693000 12803000 8406200 7980900 6026900 5490600 0 0 0 10111000 12984000 14135000 5365900 4552000 3428400 4694 716 4574 87866;87867;87868;87869;87870;87871;87872;87873;87874;87875;87876;87877;87878;87879;87880;87881;87882;87883;87884;87885;87886;87887;87888;87889;87890;87891;87892;87893;87894;87895;87896 53621;53622;53623;53624 53621 4 EIALILQR Unmodified 954.58622 0.58621603 342 P0A7G2 rbfA Ribosome-binding factor A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.414 33.877 2 0.00028268 13593 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 148.07 103.65 403530000 42314000 43321000 43313000 2149300 1913800 1988100 32867000 38949000 32885000 13372000 11542000 11619000 12061000 13970000 12335000 2161300 1495400 1677100 28081000 29678000 20616000 3224400 2001900 0 4695 342 4575 87897;87898;87899;87900;87901;87902;87903;87904;87905;87906;87907;87908;87909;87910;87911;87912;87913;87914;87915;87916;87917;87918;87919;87920 53625;53626;53627;53628;53629;53630;53631;53632;53633;53634;53635;53636;53637;53638;53639;53640;53641;53642;53643 53625 6 EIANAQQGLPSGITLK Unmodified 1638.8941 0.89408495 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.903 33.632 2 2.7586E-10 16165 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.26 145.38 127940000 21880000 20854000 16078000 0 0 869910 14059000 10907000 12380000 0 0 0 3744500 4031600 3326300 1167600 0 1065800 6299700 5654500 5619600 0 0 0 4696 326 4576 87921;87922;87923;87924;87925;87926;87927;87928;87929;87930;87931;87932;87933;87934;87935 53644;53645;53646 53644 3 EIAQALR Unmodified 799.4552 0.45520186 1768 P75767 ybhK Putative gluconeogenesis factor yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 18.855 19.299 2 0.14363 7520 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 57.102 24.173 30922000 0 0 0 0 0 0 7911200 8902500 10142000 0 0 0 0 2365300 0 0 0 0 0 1600900 0 0 0 0 4697 1768 4577 87936;87937;87938;87939;87940 53647 53647 0 EIAREYFPANYSAHGR Unmodified 1879.8965 0.89654457 1183 P21513 rne Ribonuclease E yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.353 41.838 3 0.16478 20678 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 10.099 1.0529 84164000 4354200 4436900 5180200 0 0 0 12142000 10492000 10467000 0 0 0 2004100 2251800 2747800 0 0 0 9494500 9934600 10659000 0 0 0 4698 1183 4578 87941;87942;87943;87944;87945;87946;87947;87948;87949;87950;87951;87952 53648;53649;53650;53651 53650 4 EIASYLASELK Unmodified 1222.6445 0.64451877 716 P0ACB4 hemG Protoporphyrinogen IX dehydrogenase [menaquinone] yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 39.356 37.206 2 0.00012618 14781 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 114.86 94.529 76084000 0 0 0 0 1633400 2314200 0 17901000 16531000 8197700 10272000 8097500 0 0 0 0 0 0 0 0 0 3549100 3629900 3958800 4699 716 4579 87953;87954;87955;87956;87957;87958;87959;87960;87961;87962 53652;53653;53654;53655;53656;53657 53653 4 EIAYFFGEGEVCPR Unmodified 1672.7555 0.75554256 315 P0A763 ndk Nucleoside diphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.184 43.749 2 2.4844E-11 21268 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 175.15 173.4 2069500000 306570000 286950000 266690000 1444900 1794800 1442300 119850000 106290000 106550000 0 0 0 72312000 71918000 72043000 0 0 0 226960000 222000000 206670000 0 0 0 4700 315 4580 87963;87964;87965;87966;87967;87968;87969;87970;87971;87972;87973;87974;87975;87976;87977 53658;53659;53660;53661 53661 3 EIAYRPAR Unmodified 974.52976 0.52976379 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.903 12.688 2 0.00019694 3559 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 158.36 118.69 371210000 101720000 95336000 93344000 0 0 0 19154000 18818000 18535000 0 0 0 3855500 0 0 0 0 0 11218000 9228500 0 0 0 0 4701 1254 4581 87978;87979;87980;87981;87982;87983;87984;87985;87986 53662;53663;53664 53662 3 EICPELTLR Unmodified 1129.5801 0.58014438 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.215 35.238 2 5.1921E-05 14531 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 168.23 128.13 505970000 66905000 59164000 51253000 0 0 0 0 0 0 0 0 0 37424000 33857000 36792000 6900200 8536800 9534500 64783000 68274000 61187000 1361000 0 0 4702 863 4582 87987;87988;87989;87990;87991;87992;87993;87994;87995;87996;87997;87998;87999 53665;53666;53667;53668;53669;53670;53671;53672;53673;53674;53675;53676 53669 10 EIDATCTFSNQAFDSLIPSLK Unmodified 2356.1257 0.12567738 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 54.649 53.201 2;3 6.2096E-35 26418 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 221.59 210.32 1176800000 207300000 199840000 156200000 0 0 0 66276000 59016000 40106000 0 0 0 75734000 67823000 66542000 0 0 0 80029000 77045000 80909000 0 0 0 4703 1349 4583 88000;88001;88002;88003;88004;88005;88006;88007;88008;88009;88010;88011;88012;88013;88014;88015;88016;88017;88018;88019;88020;88021;88022;88023 53677;53678;53679;53680;53681;53682;53683;53684;53685;53686;53687;53688 53679 12 EIDEYFAHVWQTMQACIDR Unmodified 2411.0675 0.067450998 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.787 53.317 3 6.6154E-07 25274 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 99.413 96.125 223970000 13520000 16949000 0 0 0 0 21634000 20977000 18071000 2622300 0 3344400 19364000 19006000 13153000 0 0 0 23447000 28827000 23051000 0 0 0 4704 1117 4584 88024;88025;88026;88027;88028;88029;88030;88031;88032;88033;88034;88035;88036 53689;53690 53690 2 EIDPHTNYLSPR Unmodified 1440.6997 0.69974224 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 3 3 1 2 3 3 1 3 3 3 1 2 2 20.645 20.944 2;3;4 2.8237E-06 8692 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 139.38 124.71 530740000 47679000 46182000 46158000 1403500 1865800 1332100 39492000 43848000 40440000 0 0 1816800 29825000 30968000 28429000 0 1101700 0 60567000 58369000 43499000 1693600 3421000 2645800 4705 1221 4585 88037;88038;88039;88040;88041;88042;88043;88044;88045;88046;88047;88048;88049;88050;88051;88052;88053;88054;88055;88056;88057;88058;88059;88060;88061;88062;88063;88064;88065;88066;88067;88068;88069;88070;88071;88072;88073;88074;88075;88076;88077 53691;53692;53693;53694;53695;53696;53697;53698;53699;53700;53701;53702;53703;53704;53705;53706;53707 53696 11 EIDQILK Unmodified 857.48583 0.48583328 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 25.031 23.923 2 0.014935 10654 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 82.263 23.576 211830000 0 0 0 0 0 0 25894000 30428000 27224000 0 1013700 0 15501000 16319000 15835000 0 0 0 27384000 29099000 22717000 0 413140 0 4706 35 4586 88078;88079;88080;88081;88082;88083;88084;88085;88086;88087;88088 53708;53709;53710;53711 53709 4 EIDYTRPTCILMGQEK Unmodified 1952.9336 0.93358328 1021 P0AGJ2 trmH tRNA (guanosine(18)-2'-O)-methyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.541 33.561 3 0.0001427 12052 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 70.197 66.417 130350000 14892000 15215000 11988000 0 0 0 0 0 0 0 0 0 8776300 9055600 9448900 7989600 5358400 4596700 14195000 14765000 14067000 0 0 0 4707 1021 4587 88089;88090;88091;88092;88093;88094;88095;88096;88097;88098;88099;88100 53712;53713;53714 53712 3 EIEAAYNELK Unmodified 1178.5819 0.58191851 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.762 23.721 2 0.00012656 10491 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.97 146.01 195670000 20623000 19426000 17725000 0 0 0 11642000 10495000 9569700 0 1906600 1566100 19636000 14882000 14202000 0 0 0 17059000 19569000 17368000 0 0 0 4708 951 4588 88101;88102;88103;88104;88105;88106;88107;88108;88109;88110;88111;88112;88113;88114 53715;53716;53717;53718;53719;53720;53721;53722;53723 53719 9 EIEAAYNELKK Unmodified 1306.6769 0.67688153 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 18.019 18.631 2;3 4.0163E-10 6975 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.41 177.72 880910000 83553000 81250000 72002000 1002400 953720 1228500 48366000 51235000 49792000 0 0 0 83896000 79991000 78527000 0 0 0 76052000 79994000 93073000 0 0 0 4709 951 4589 88115;88116;88117;88118;88119;88120;88121;88122;88123;88124;88125;88126;88127;88128;88129;88130;88131;88132;88133;88134;88135;88136;88137;88138;88139;88140;88141;88142 53724;53725;53726;53727;53728;53729;53730;53731;53732;53733;53734;53735;53736;53737;53738;53739;53740;53741;53742;53743 53728 20 EIEEGLINNQILDVR Unmodified 1753.921 0.92102798 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 2 2 3 6 8 9 3 2 3 19 17 17 2 3 2 12 13 10 48.739 47.711 2;3 4.2105E-38 20611 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 273.8 224.45 45435000000 279200000 270880000 247380000 19088000 18652000 16240000 223950000 199870000 212630000 2579700000 2457100000 2477700000 222160000 185600000 220330000 6464000000 8216700000 9660500000 311250000 310160000 285480000 3511300000 3697700000 3347500000 4710 384 4590 88143;88144;88145;88146;88147;88148;88149;88150;88151;88152;88153;88154;88155;88156;88157;88158;88159;88160;88161;88162;88163;88164;88165;88166;88167;88168;88169;88170;88171;88172;88173;88174;88175;88176;88177;88178;88179;88180;88181;88182;88183;88184;88185;88186;88187;88188;88189;88190;88191;88192;88193;88194;88195;88196;88197;88198;88199;88200;88201;88202;88203;88204;88205;88206;88207;88208;88209;88210;88211;88212;88213;88214;88215;88216;88217;88218;88219;88220;88221;88222;88223;88224;88225;88226;88227;88228;88229;88230;88231;88232;88233;88234;88235;88236;88237;88238;88239;88240;88241;88242;88243;88244;88245;88246;88247;88248;88249;88250;88251;88252;88253;88254;88255;88256;88257;88258;88259;88260;88261;88262;88263;88264;88265;88266;88267;88268;88269;88270;88271;88272;88273;88274;88275;88276;88277;88278;88279;88280;88281;88282;88283;88284;88285;88286;88287;88288 53744;53745;53746;53747;53748;53749;53750;53751;53752;53753;53754;53755;53756;53757;53758;53759;53760;53761;53762;53763;53764;53765;53766;53767;53768;53769;53770;53771;53772;53773;53774;53775;53776;53777;53778;53779;53780;53781;53782;53783;53784;53785;53786;53787;53788;53789;53790;53791;53792;53793;53794;53795;53796;53797;53798;53799;53800;53801;53802;53803;53804;53805;53806;53807;53808;53809;53810;53811;53812;53813;53814;53815;53816;53817;53818;53819;53820;53821;53822;53823;53824;53825;53826;53827;53828;53829;53830;53831;53832;53833;53834;53835;53836;53837;53838;53839;53840;53841;53842;53843;53844;53845;53846;53847;53848;53849;53850;53851;53852;53853;53854;53855;53856;53857;53858;53859;53860;53861;53862;53863;53864;53865;53866;53867;53868;53869;53870;53871;53872;53873;53874;53875;53876;53877;53878;53879;53880;53881;53882;53883;53884;53885;53886;53887;53888;53889 53763 139 EIEGLISESVR Unmodified 1230.6456 0.6455814 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 33.764 32.296 2 1.478E-06 11104 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 156.35 121.05 53203000 3418000 4783900 4304700 11131000 14695000 13218000 0 0 1654000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4711 114 4591 88289;88290;88291;88292;88293;88294;88295 53890;53891;53892;53893 53892 3 EIELDVLDHLR Unmodified 1350.7143 0.71432967 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 1 2 1 1 1 1 43.973 42.503 2;3 5.2276E-05 20818 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.02 113.8 262940000 33409000 32679000 37707000 0 0 0 23369000 22651000 17914000 0 0 0 23931000 11175000 17578000 2839500 0 0 11286000 14653000 13744000 0 0 0 4712 1387 4592 88296;88297;88298;88299;88300;88301;88302;88303;88304;88305;88306;88307;88308;88309;88310;88311;88312;88313;88314;88315 53894;53895;53896;53897;53898;53899;53900;53901;53902;53903;53904;53905;53906;53907 53900 12 EIELEDK Unmodified 874.42838 0.42837799 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.375 17.166 1;2 0.0059278 5748 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.602 54.602 828390000 73553000 72939000 59349000 0 0 0 78145000 70419000 72486000 0 0 0 63814000 60645000 55536000 0 0 0 71601000 76755000 73147000 0 0 0 4713 240 4593 88316;88317;88318;88319;88320;88321;88322;88323;88324;88325;88326;88327;88328;88329;88330;88331;88332;88333;88334;88335;88336;88337;88338;88339 53908;53909;53910;53911;53912;53913;53914;53915;53916;53917;53918;53919 53916 10 EIELEDKFENMGAQMVK Unmodified 2009.9438 0.94381361 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 2 2 2 40.944 39.282 2;3 3.6123E-119 19082 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 397.72 386.23 21258000000 2145600000 1871800000 1892200000 54298000 45147000 49615000 1767400000 1731800000 1730100000 9060800 62587000 68618000 1426300000 1368000000 1403800000 26117000 19532000 21924000 1835200000 1856200000 1705400000 56155000 56446000 54211000 4714 240 4594 88340;88341;88342;88343;88344;88345;88346;88347;88348;88349;88350;88351;88352;88353;88354;88355;88356;88357;88358;88359;88360;88361;88362;88363;88364;88365;88366;88367;88368;88369;88370;88371;88372;88373;88374;88375;88376;88377;88378;88379;88380;88381;88382;88383;88384 53920;53921;53922;53923;53924;53925;53926;53927;53928;53929;53930;53931;53932;53933;53934;53935;53936;53937;53938;53939;53940;53941;53942;53943;53944;53945;53946;53947;53948;53949;53950;53951;53952;53953;53954;53955;53956;53957;53958;53959;53960;53961;53962;53963 53942 44 EIELEDKFENMGAQMVK Oxidation (M) 2025.9387 0.93872824 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 1 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 3 3 3 2 3 2 36.86 35.347 3 0.00010821 14784 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 71.98 71.08 274700000 16515000 41713000 15057000 0 0 0 18365000 15111000 18879000 0 0 0 27867000 22753000 21017000 0 0 0 17383000 37870000 22169000 0 0 0 4715 240 4594 88385;88386;88387;88388;88389;88390;88391;88392;88393;88394;88395;88396;88397;88398;88399;88400;88401;88402;88403;88404;88405;88406;88407;88408;88409;88410;88411;88412;88413 53964;53965;53966;53967;53968;53969;53970;53971;53972 53972 98;99 9 EIEQLPMVK Unmodified 1085.5791 0.57908174 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 30.456 29.03 2 0.00089718 10062 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 98.418 53.697 2787500000 2305200 0 0 3143800 0 2626000 229390000 231130000 240690000 84734000 86860000 76341000 209950000 210820000 198820000 21519000 13808000 15120000 330690000 337060000 308650000 69162000 56457000 58207000 4716 1442 4595 88414;88415;88416;88417;88418;88419;88420;88421;88422;88423;88424;88425;88426;88427;88428;88429;88430;88431;88432;88433;88434;88435;88436 53973;53974;53975;53976;53977;53978;53979;53980;53981;53982;53983;53984;53985;53986;53987;53988;53989;53990;53991;53992 53973 20 EIEQLPMVK Oxidation (M) 1101.574 0.57399637 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 2 25.088 23.987 2 0.02284 10744 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.972 29.017 39116000 0 0 0 0 0 0 6384100 8214400 0 0 0 1933900 5063700 4404400 0 0 0 0 0 6376000 6740000 0 0 0 4717 1442 4595 88437;88438;88439;88440;88441;88442;88443;88444;88445;88446;88447 53993;53994;53995;53996;53997 53995 547 5 EIESYDAVLVLGEDVTQTGAR Unmodified 2264.1172 0.11722119 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 53.844 52.422 2;3 2.836E-52 24882 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 249.3 228 526310000 13477000 13867000 10234000 11709000 14884000 11159000 31439000 36418000 31623000 16497000 28521000 20622000 37394000 32828000 27603000 0 0 0 66509000 54715000 44674000 10088000 0 12053000 4718 1427 4596 88448;88449;88450;88451;88452;88453;88454;88455;88456;88457;88458;88459;88460;88461;88462;88463;88464;88465;88466;88467;88468;88469;88470;88471;88472;88473;88474;88475;88476;88477;88478;88479;88480;88481;88482;88483;88484;88485;88486;88487 53998;53999;54000;54001 54001 4 EIETRPGSIVR Unmodified 1255.6884 0.68844927 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 2 2 15.549 15.822 2;3 2.109E-05 4476 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 144.77 126.95 1651800000 469040000 523140000 441840000 6893400 0 0 0 0 0 24949000 23976000 18777000 0 0 0 43707000 32661000 29672000 0 0 0 6521400 15235000 15418000 4719 990 4597 88488;88489;88490;88491;88492;88493;88494;88495;88496;88497;88498;88499;88500;88501;88502;88503;88504;88505;88506;88507;88508;88509;88510;88511 54002;54003;54004;54005;54006;54007;54008;54009;54010;54011;54012;54013;54014;54015;54016;54017;54018 54008 17 EIETYHNLLEGGQEDFESSGAGK Unmodified 2509.1245 0.12449141 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 36.037 34.273 2;3 4.2632E-103 13673 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 432.27 423.8 1611000000 0 0 0 18575000 15315000 17824000 0 0 0 417080000 332190000 338720000 0 0 0 16705000 9162800 11280000 0 0 0 142440000 147290000 144380000 + 4720 16 4598 88512;88513;88514;88515;88516;88517;88518;88519;88520;88521;88522;88523;88524;88525;88526;88527;88528;88529;88530;88531;88532 54019;54020;54021;54022;54023;54024;54025;54026;54027;54028;54029;54030;54031;54032;54033;54034;54035 54022 16 EIFEELFPLPSAAECVPGGPSVACSSAK Unmodified 2948.3936 0.39359574 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 54.793 53.281 2 4.539E-23 26445 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 212.69 207.69 127560000 16379000 17117000 16363000 0 0 0 28273000 28258000 21170000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4721 1191 4599 88533;88534;88535;88536;88537;88538 54036;54037 54037 2 EIFGSSDTDADPVAVVR Unmodified 1776.853 0.853008 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 39.95 38.183 2 1.0191E-13 18853 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 195.25 193.66 108610000 13061000 14266000 16350000 0 0 0 16834000 13111000 14380000 0 0 0 0 0 0 0 0 0 14859000 5750800 0 0 0 0 4722 1399 4600 88539;88540;88541;88542;88543;88544;88545;88546 54038;54039;54040;54041;54042 54039 4 EIFNMSNQR Unmodified 1137.5237 0.52369213 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.608 22.887 2 0.00081372 9747 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.32 109.11 203230000 19289000 19597000 16363000 0 0 0 13384000 20929000 15450000 0 0 0 17531000 15071000 16877000 0 0 0 14312000 13610000 20816000 0 0 0 4723 1246 4601 88547;88548;88549;88550;88551;88552;88553;88554;88555;88556;88557;88558 54043 54043 1 EIGAAIQK Unmodified 828.47052 0.47051757 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 1 2 1 2 2 2 1 1 1 1 13.581 14.44 1;2 0.0031954 4543 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.163 72.617 1098300000 149120000 128520000 126090000 1286700 1086400 1551000 81742000 91922000 74900000 0 0 0 73989000 60579000 63025000 0 0 365230 77309000 90563000 76275000 0 0 0 4724 829 4602 88559;88560;88561;88562;88563;88564;88565;88566;88567;88568;88569;88570;88571;88572;88573;88574;88575;88576;88577;88578;88579;88580;88581;88582;88583;88584 54044;54045;54046;54047;54048;54049;54050;54051;54052;54053;54054;54055 54049 10 EIGDADHGLNMNR Unmodified 1440.6416 0.64157543 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 17.705 18.192 2;3 2.431E-24 6609 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 300.33 285.39 3003700000 71448000 52690000 63480000 842130 611020 737410 447220000 396680000 384920000 3947300 3576400 2587300 308170000 284360000 271500000 751390 786240 908590 224910000 239490000 243170000 0 0 909650 4725 1805 4603 88585;88586;88587;88588;88589;88590;88591;88592;88593;88594;88595;88596;88597;88598;88599;88600;88601;88602;88603;88604;88605;88606;88607;88608;88609;88610;88611;88612;88613;88614;88615;88616;88617;88618;88619;88620;88621 54056;54057;54058;54059;54060;54061;54062;54063;54064;54065;54066;54067;54068;54069;54070;54071;54072;54073;54074;54075 54068 20 EIGEALYDAYPDLDPK Unmodified 1807.8516 0.85161101 1040 P0C0L9 iscX Protein IscX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 46.354 44.864 2;3 4.2065E-08 21155 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.99 111.86 812400000 57098000 57691000 42822000 0 0 0 64570000 55318000 64360000 0 0 0 70445000 62077000 62788000 0 0 0 88740000 98300000 88194000 0 0 0 4726 1040 4604 88622;88623;88624;88625;88626;88627;88628;88629;88630;88631;88632;88633;88634;88635;88636;88637;88638;88639;88640;88641;88642;88643;88644;88645 54076;54077;54078;54079;54080;54081;54082;54083;54084;54085;54086;54087;54088;54089 54085 14 EIGELENK Unmodified 930.46583 0.46582612 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.084 15.627 2 6.3142E-05 4165 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 168.45 128.79 658050000 38008000 42525000 43565000 33434000 33382000 35859000 42909000 40651000 36499000 21059000 16904000 19866000 26638000 26047000 21585000 10772000 8685300 8598500 32720000 32569000 34011000 16339000 19383000 16047000 4727 956 4605 88646;88647;88648;88649;88650;88651;88652;88653;88654;88655;88656;88657;88658;88659;88660;88661;88662;88663;88664;88665;88666;88667;88668;88669 54090;54091;54092;54093;54094;54095;54096;54097 54094 6 EIGEVLATHDETQR Unmodified 1596.7744 0.77436375 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 19.769 20.223 2;3 1.9672E-26 7985 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 271.65 255.02 475890000 0 0 0 0 0 0 52998000 52086000 59452000 0 0 0 57519000 54360000 53957000 0 0 0 47610000 56139000 41767000 0 0 0 4728 1424 4606 88670;88671;88672;88673;88674;88675;88676;88677;88678;88679;88680;88681;88682;88683;88684;88685;88686;88687 54098;54099;54100;54101;54102;54103;54104;54105;54106;54107;54108;54109;54110 54103 12 EIGFTSTNIDLIYGLPK Unmodified 1879.9931 0.99313029 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.894 52.47 2 2.0109E-08 25959 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.51 102.43 154220000 27233000 21152000 19144000 0 0 0 0 10132000 9728100 0 0 0 10810000 11879000 10588000 0 0 0 11818000 12070000 9659800 0 0 0 4729 1387 4607 88688;88689;88690;88691;88692;88693;88694;88695;88696;88697;88698 54111;54112;54113;54114 54111 4 EIGISNFTIPLMEK Unmodified 1590.8327 0.83273025 1351 P30863 dkgB 2,5-diketo-D-gluconic acid reductase B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.689 52.249 2 0.00014503 25520 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 85.288 78.755 159530000 26679000 23639000 27251000 0 0 0 7704700 7508500 8018800 0 0 0 8641500 7469700 7610600 0 0 0 13290000 11471000 10248000 0 0 0 4730 1351 4608 88699;88700;88701;88702;88703;88704;88705;88706;88707;88708;88709;88710 54115 54115 1 EIGITELSQR Unmodified 1144.6088 0.60880197 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.001 27.975 2 1.1292E-06 13157 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 168.27 140.09 773780000 77720000 72644000 78636000 0 0 549870 67344000 63588000 63518000 0 0 0 46731000 53132000 47119000 2964000 1864900 2414600 68358000 64458000 62743000 0 0 0 4731 1845 4609 88711;88712;88713;88714;88715;88716;88717;88718;88719;88720;88721;88722;88723;88724;88725;88726 54116;54117 54117 2 EIGNGFSELNDAEDQAER Unmodified 1992.8661 0.86609188 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 4 4 4 3 4 4 3 4 4 36.213 34.618 2;3 1.7499E-36 15854 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 289.89 289.89 2080300000 112550000 136070000 136650000 0 0 0 198350000 199140000 181720000 0 0 0 162490000 162820000 175400000 0 0 0 204010000 210480000 200640000 0 0 0 4732 449 4610 88727;88728;88729;88730;88731;88732;88733;88734;88735;88736;88737;88738;88739;88740;88741;88742;88743;88744;88745;88746;88747;88748;88749;88750;88751;88752;88753;88754;88755;88756;88757;88758;88759;88760;88761;88762;88763;88764;88765;88766;88767;88768;88769;88770 54118;54119;54120;54121;54122;54123;54124;54125;54126;54127;54128;54129;54130;54131;54132;54133;54134;54135;54136;54137 54130 20 EIGNGFSELNDAEDQAQR Unmodified 1991.8821 0.88207629 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 33.341 31.894 2;3 1.2781E-67 15372 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 311.71 311.71 691560000 57074000 52001000 43505000 589920 0 0 57800000 54610000 53325000 0 0 0 52885000 47538000 40698000 0 0 0 72109000 79083000 80343000 0 0 0 4733 448 4611 88771;88772;88773;88774;88775;88776;88777;88778;88779;88780;88781;88782;88783;88784;88785;88786;88787;88788;88789;88790;88791;88792;88793;88794;88795 54138;54139;54140;54141;54142;54143;54144;54145;54146;54147;54148;54149;54150 54139 13 EIGPLATPDVLHWTDSLPK Unmodified 2088.0892 0.089155943 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 2 2 1 52.226 50.984 2;3 1.9433E-17 24738 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 191.06 177.73 2424000000 794300000 731090000 784040000 3082500 2163800 0 6729200 7173800 9356300 0 0 0 6461800 6930300 9004300 0 0 0 22245000 21614000 19802000 0 0 0 4734 1305 4612 88796;88797;88798;88799;88800;88801;88802;88803;88804;88805;88806;88807;88808;88809;88810;88811;88812;88813;88814 54151;54152;54153;54154;54155;54156 54156 6 EIGVETGGSNVQFAVNPK Unmodified 1844.9268 0.92684164 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 1 33.658 32.371 2;3 7.6345E-29 15347 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 204.48 195.97 990500000 236520000 218230000 224290000 0 0 0 0 0 0 0 0 0 23230000 20345000 21815000 0 0 0 87270000 77392000 81406000 0 0 0 4735 65 4613 88815;88816;88817;88818;88819;88820;88821;88822;88823;88824;88825;88826;88827 54157;54158;54159;54160;54161;54162;54163;54164;54165;54166;54167;54168;54169 54158 13 EIGVIPGPLER Unmodified 1178.6659 0.66592292 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.811 36.234 2 2.7515E-07 17421 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 160.59 151 824450000 96982000 97048000 96816000 739130 1027300 925530 56215000 51354000 51201000 0 0 0 59477000 57614000 52054000 1068200 0 0 70306000 67410000 64215000 0 0 0 4736 740 4614 88828;88829;88830;88831;88832;88833;88834;88835;88836;88837;88838;88839;88840;88841;88842;88843 54170;54171;54172;54173;54174;54175;54176;54177;54178;54179;54180;54181 54175 12 EIGYPLVVR Unmodified 1044.5968 0.59678072 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 35.392 33.978 2 0.0043965 16275 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 78.178 60.793 869570000 203000000 194400000 164420000 0 0 0 0 0 0 0 0 0 23942000 20355000 20134000 0 0 0 81557000 86904000 74857000 0 0 0 4737 65 4615 88844;88845;88846;88847;88848;88849;88850;88851;88852 54182;54183;54184;54185;54186;54187;54188 54184 3 EIGYPLVVRPSYVLGGR Unmodified 1874.0414 0.04141789 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 2 1 2 2 2 1 2 1 43.545 41.904 2;3 1.6725E-13 20507 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.18 152.46 807160000 178970000 178270000 157700000 1005800 1405900 0 0 0 2135500 1491400 1711800 1134600 14598000 19018000 14252000 0 0 0 76113000 71305000 73127000 4505400 5656800 4752600 4738 65 4616 88853;88854;88855;88856;88857;88858;88859;88860;88861;88862;88863;88864;88865;88866;88867;88868;88869;88870;88871;88872;88873;88874;88875;88876;88877;88878 54189;54190;54191;54192;54193;54194;54195;54196;54197;54198;54199;54200;54201;54202;54203;54204 54197 16 EIGYVHSDMGFDANSCAVLSAIGK Unmodified 2540.1676 0.16755897 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.961 45.435 3 1.1973E-15 22010 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 152.13 152.03 1007700000 81577000 63117000 49278000 3303100 2957200 3389600 118780000 124240000 128290000 18012000 15344000 17594000 69981000 58875000 56542000 0 0 0 71347000 63962000 61144000 0 0 0 4739 388 4617 88879;88880;88881;88882;88883;88884;88885;88886;88887;88888;88889;88890;88891;88892;88893;88894;88895;88896 54205;54206;54207;54208;54209;54210;54211;54212;54213;54214;54215;54216;54217 54213 13 EIHFRPELFK Unmodified 1314.7085 0.70845643 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 28.06 26.894 2;3 0.00051689 11831 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 112.75 90.511 268330000 18466000 16528000 17949000 0 0 0 21089000 26426000 26465000 0 0 0 21802000 16143000 17537000 0 0 0 24570000 35842000 25510000 0 0 0 4740 1548 4618 88897;88898;88899;88900;88901;88902;88903;88904;88905;88906;88907;88908;88909;88910;88911;88912;88913;88914;88915;88916;88917;88918 54218;54219;54220;54221;54222;54223;54224;54225;54226;54227;54228;54229 54227 12 EIIHQQMGGLR Unmodified 1280.6659 0.66593969 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 1 2 2 2 17.418 18.065 2;3 2.4055E-10 6254 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 229.55 202.76 4301200000 418200000 457300000 394200000 0 0 0 332370000 338770000 307530000 0 0 0 117750000 401790000 364000000 378550 0 0 395160000 421810000 351950000 0 0 0 4741 788 4619 88919;88920;88921;88922;88923;88924;88925;88926;88927;88928;88929;88930;88931;88932;88933;88934;88935;88936;88937;88938;88939;88940;88941;88942 54230;54231;54232;54233;54234;54235;54236;54237;54238;54239;54240;54241;54242;54243;54244;54245;54246;54247 54243 18 EIIISALR Unmodified 913.55967 0.55966693 655 P0ABF8 pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.239 32.658 2 0.00083171 15814 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.29 73.177 84312000 5026300 5459000 4975900 556850 0 858620 8189800 10426000 8971700 2622700 0 0 5267300 4473300 4645700 0 0 0 8139900 7064100 6800000 0 0 834080 4742 655 4620 88943;88944;88945;88946;88947;88948;88949;88950;88951;88952;88953;88954;88955;88956;88957;88958 54248;54249;54250;54251;54252;54253;54254 54249 7 EIKPTTILHVAAK Unmodified 1419.8449 0.84494991 1354 P30871 ygiF Inorganic triphosphatase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 22.303 22.027 4 0.071833 8973 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 34.685 31.988 69868000 14109000 14323000 10057000 714220 1082300 0 5720900 9388200 5937000 984130 0 0 0 0 0 0 0 0 0 0 5668000 564370 893460 425320 4743 1354 4621 88959;88960;88961;88962;88963;88964;88965;88966;88967;88968;88969;88970;88971 54255;54256 54256 2 EIKVNVGDKVSTGSLIMVFEVAGEAGAAAPAAK Unmodified 3228.7064 0.70641411 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 3 51.86 50.566 3;4;5 1.7409E-18 18282 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 143.09 142.68 199210000 0 0 0 49817000 45400000 35934000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21287000 17683000 29093000 4744 133 4622 88972;88973;88974;88975;88976;88977;88978;88979;88980;88981;88982;88983;88984;88985;88986 54257;54258;54259;54260;54261;54262;54263;54264;54265;54266;54267 54263 11 EILAHPLVGGLILFTR Unmodified 1748.0349 0.034875949 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.807 50.559 3 7.4344E-19 25019 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 192.32 192.32 342770000 26728000 22813000 29600000 0 0 0 30475000 29691000 30320000 0 0 0 26627000 27766000 19612000 0 0 0 35585000 31141000 32410000 0 0 0 4745 1794 4623 88987;88988;88989;88990;88991;88992;88993;88994;88995;88996;88997;88998 54268;54269;54270;54271;54272;54273;54274;54275;54276;54277;54278;54279 54269 12 EILAQLSQYPVSTR Unmodified 1603.857 0.85697116 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 2 2 1 1 1 39.931 38.104 2;3 3.4716E-68 17693 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 325.78 298.03 2406800000 332330000 298200000 274790000 3537700 3219500 2358600 155650000 151920000 134090000 4599500 5787500 4995500 161980000 150990000 152850000 0 0 0 187700000 197680000 173930000 3252100 3595200 3320600 4746 696;1097 4624 88999;89000;89001;89002;89003;89004;89005;89006;89007;89008;89009;89010;89011;89012;89013;89014;89015;89016;89017;89018;89019;89020;89021;89022;89023;89024;89025;89026;89027;89028;89029;89030;89031;89032;89033;89034 54280;54281;54282;54283;54284;54285;54286;54287;54288;54289;54290;54291;54292;54293;54294;54295;54296;54297;54298;54299;54300;54301;54302;54303;54304;54305;54306;54307;54308 54307 29 EILAVVEAVSNEK Unmodified 1399.7559 0.75586013 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 2 1 2 2 2 2 3 3 2 2 2 3 5 3 2 2 2 4 4 3 43.303 41.783 2;3 6.5646E-26 16190 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 248.45 240.57 10127000000 207990000 187220000 185910000 1609000 2515700 1930700 113950000 102290000 86508000 525570000 476250000 558290000 147970000 124220000 127460000 1338500000 1049700000 1185500000 139640000 144080000 141790000 1205200000 1085100000 987720000 4747 935 4625 89035;89036;89037;89038;89039;89040;89041;89042;89043;89044;89045;89046;89047;89048;89049;89050;89051;89052;89053;89054;89055;89056;89057;89058;89059;89060;89061;89062;89063;89064;89065;89066;89067;89068;89069;89070;89071;89072;89073;89074;89075;89076;89077;89078;89079;89080;89081;89082;89083;89084;89085;89086;89087;89088;89089;89090;89091;89092;89093 54309;54310;54311;54312;54313;54314;54315;54316;54317;54318;54319;54320;54321;54322;54323;54324;54325;54326;54327;54328;54329;54330;54331;54332;54333;54334;54335;54336;54337;54338;54339;54340;54341;54342;54343;54344;54345;54346;54347;54348;54349;54350;54351;54352;54353;54354;54355;54356;54357;54358;54359;54360;54361;54362;54363;54364;54365;54366;54367;54368;54369;54370;54371;54372;54373;54374;54375;54376;54377 54348 67 EILDVQAR Unmodified 942.51345 0.51344502 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.668 21.996 2 0.014862 9183 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.134 47.985 269510000 31126000 26747000 25840000 0 0 0 27980000 24867000 24971000 3551900 647020 0 17488000 14481000 16603000 0 0 0 16792000 19569000 18849000 0 0 0 4748 88 4626 89094;89095;89096;89097;89098;89099;89100;89101;89102;89103;89104;89105;89106;89107 54378;54379;54380;54381 54381 3 EILEDYAGGMR Unmodified 1252.5758 0.57578728 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.962 30.58 2 3.2258E-10 14428 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.3 144.32 633410000 23536000 24989000 24932000 15590000 14493000 14667000 46591000 40400000 45199000 24408000 17708000 20599000 32808000 31427000 29992000 3665800 3232300 2749600 55254000 55783000 54167000 18648000 16547000 16024000 4749 1383 4627 89108;89109;89110;89111;89112;89113;89114;89115;89116;89117;89118;89119;89120;89121;89122;89123;89124;89125;89126;89127;89128;89129;89130;89131 54382;54383;54384;54385;54386;54387;54388;54389;54390;54391;54392;54393;54394;54395;54396;54397;54398;54399;54400 54394 15 EILGDEADQYVK Unmodified 1378.6616 0.6616254 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.768 29.412 2 9.161E-06 13634 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 130.66 94.099 3532800000 387130000 392030000 340240000 0 0 0 220220000 231820000 228150000 0 0 0 253940000 236940000 236410000 0 0 0 310880000 339220000 355870000 0 0 0 4750 58 4628 89132;89133;89134;89135;89136;89137;89138;89139;89140;89141;89142;89143 54401;54402;54403;54404;54405;54406;54407;54408;54409;54410;54411;54412 54409 12 EILGIHCFGER Unmodified 1329.65 0.64995528 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 1 1 2 2 2 30.396 28.948 2;3 3.0547E-07 13497 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.33 158.1 1530400000 229900000 251880000 201260000 0 0 0 59149000 77111000 76270000 6841300 7533900 7769600 60240000 66739000 49741000 0 2539400 3110100 147940000 146040000 136360000 0 0 0 4751 1302 4629 89144;89145;89146;89147;89148;89149;89150;89151;89152;89153;89154;89155;89156;89157;89158;89159;89160;89161;89162;89163;89164;89165;89166;89167;89168;89169;89170;89171;89172;89173;89174 54413;54414;54415;54416;54417;54418;54419;54420;54421;54422;54423;54424;54425;54426;54427;54428;54429;54430;54431;54432;54433 54419 21 EILIITTPEDK Unmodified 1270.702 0.70203365 1641 P61887 rmlA2 Glucose-1-phosphate thymidylyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 36.529 34.899 2 0.00012111 17214 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 115.82 103.3 92548000 0 0 0 0 0 0 13008000 10941000 13264000 0 0 0 8436400 5979900 7443700 0 0 0 12317000 12082000 9076100 0 0 0 4752 1641 4630 89175;89176;89177;89178;89179;89180;89181;89182;89183 54434;54435;54436;54437;54438;54439;54440;54441 54434 4 EILLVTHASK Unmodified 1109.6445 0.64445919 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 18.656 19.032 2;3 9.7114E-05 6779 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 130.75 120.97 3488600000 229760000 219520000 174260000 10061000 10506000 9340500 313400000 307440000 388650000 6731300 6211800 6107000 235700000 206340000 147300000 6992000 4739200 1983500 392660000 415010000 375890000 7334000 6706700 5944200 4753 583 4631 89184;89185;89186;89187;89188;89189;89190;89191;89192;89193;89194;89195;89196;89197;89198;89199;89200;89201;89202;89203;89204;89205;89206;89207;89208;89209;89210;89211;89212;89213;89214;89215;89216;89217;89218;89219;89220;89221;89222;89223;89224;89225;89226;89227;89228;89229 54442;54443;54444;54445;54446;54447;54448;54449;54450;54451;54452;54453;54454;54455;54456;54457;54458;54459;54460;54461;54462;54463;54464;54465;54466;54467;54468 54464 26 EILNLPEHELNK Unmodified 1447.7671 0.76709352 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 28.17 26.779 2;3 2.69E-12 12136 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 242.35 217.57 992430000 147240000 144000000 130030000 31242000 28708000 30580000 46655000 51254000 41210000 14593000 20325000 15843000 48194000 36568000 30517000 0 0 0 50590000 48796000 52706000 7651100 8014700 7716000 4754 1807 4632 89230;89231;89232;89233;89234;89235;89236;89237;89238;89239;89240;89241;89242;89243;89244;89245;89246;89247;89248;89249;89250;89251;89252;89253;89254;89255;89256;89257;89258;89259;89260;89261;89262;89263;89264;89265;89266;89267;89268;89269;89270;89271 54469;54470;54471;54472;54473;54474;54475;54476;54477;54478;54479;54480;54481;54482;54483;54484;54485;54486;54487;54488;54489;54490;54491;54492;54493 54487 25 EILQDSTVTR Unmodified 1160.6037 0.60371659 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.298 19.69 2 4.0755E-05 7753 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.3 157.08 2977900000 254830000 244920000 208270000 0 0 0 259860000 260780000 271690000 0 4168100 0 236710000 229740000 177410000 0 1777700 0 273420000 286080000 257470000 3888700 3138800 3757500 4755 295 4633 89272;89273;89274;89275;89276;89277;89278;89279;89280;89281;89282;89283;89284;89285;89286;89287;89288 54494;54495;54496;54497;54498;54499;54500;54501;54502;54503;54504;54505 54494 11 EILQTQGLNIEALFR Unmodified 1743.9519 0.95193418 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 54.587 54.412 2;3 2.3558E-56 20269 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 295.81 241.47 673620000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 172370000 243560000 257630000 54113 0 0 0 0 0 4756 1089 4634 89289;89290;89291;89292;89293;89294;89295 54506;54507;54508;54509;54510;54511 54508 6 EILQTQGLNIEALFRE Unmodified 1872.9945 0.99452728 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 54.47 54.526 2;3 1.832E-30 20346 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 272.92 269.77 1871600000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 521630000 731040000 618950000 0 0 0 0 0 0 4757 1089 4635 89296;89297;89298;89299;89300;89301 54512;54513;54514;54515;54516;54517 54515 6 EILSDEPGMSPLEIWCNESQER Unmodified 2618.1629 0.16286753 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 1 1 1 1 2 53.666 52.284 2;3 4.7352E-64 25737 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 292.83 292.83 182030000 47726000 42534000 51482000 0 0 0 0 0 0 0 0 0 10211000 6424900 4508200 0 0 0 6703600 3570700 8865800 0 0 0 4758 1107 4636 89302;89303;89304;89305;89306;89307;89308;89309;89310;89311;89312;89313;89314;89315 54518;54519;54520;54521;54522 54521 5 EILSEMGYTHVENAGGLK Unmodified 1946.9408 0.94077715 1220 P23857 pspE Thiosulfate sulfurtransferase PspE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.437 31.098 2;3 7.554E-95 15064 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 348.85 348.85 2493000000 132440000 144000000 135790000 0 0 0 371740000 344530000 353730000 0 0 0 162280000 147960000 150590000 0 0 0 174330000 190570000 184990000 0 0 0 4759 1220 4637 89316;89317;89318;89319;89320;89321;89322;89323;89324;89325;89326;89327;89328;89329;89330;89331;89332;89333;89334;89335;89336;89337;89338;89339 54523;54524;54525;54526;54527;54528;54529;54530;54531;54532;54533;54534;54535;54536;54537;54538;54539;54540;54541;54542;54543;54544;54545;54546 54524 24 EILTNDISDNSGLGQHTTTAAR Unmodified 2313.1197 0.1196808 1519 P39286 rsgA Putative ribosome biogenesis GTPase RsgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.29 25.179 3 2.9065E-28 11679 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 190.83 183.38 204590000 28033000 31642000 36826000 0 0 0 13552000 16242000 14314000 0 0 0 0 11856000 10534000 0 0 0 17077000 15114000 9400100 0 0 0 4760 1519 4638 89340;89341;89342;89343;89344;89345;89346;89347;89348;89349;89350;89351 54547;54548;54549;54550;54551;54552;54553;54554;54555;54556;54557;54558 54547 12 EILVEHYDNIEQK Unmodified 1628.8046 0.80460124 1039 P0C0L7 proP Proline/betaine transporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 25.038 23.932 2;3 2.3351E-32 10691 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 270.1 253.43 578920000 14575000 24000000 17990000 10948000 10726000 10285000 47031000 45592000 39825000 29284000 30389000 24953000 39377000 39591000 35915000 0 2610500 0 46576000 41174000 43781000 8159800 8476600 7658900 4761 1039 4639 89352;89353;89354;89355;89356;89357;89358;89359;89360;89361;89362;89363;89364;89365;89366;89367;89368;89369;89370;89371;89372;89373;89374;89375;89376;89377;89378;89379;89380;89381;89382;89383;89384;89385;89386;89387;89388;89389;89390;89391;89392 54559;54560;54561;54562;54563;54564;54565;54566;54567;54568;54569;54570;54571;54572;54573;54574;54575;54576;54577;54578;54579;54580;54581;54582;54583;54584;54585;54586;54587;54588;54589;54590;54591 54573 33 EILVISQDTSAYGVDVK Unmodified 1835.9517 0.95165941 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 42.962 41.257 2 0.043038 20153 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 46.159 42.485 36237000 0 0 0 0 0 712550 0 0 0 1411400 0 2505500 4055700 3311600 3581800 0 0 0 7751300 5758400 7148800 0 0 0 4762 863 4640 89393;89394;89395;89396;89397;89398;89399;89400;89401 54592 54592 0 EIMALADLANR Unmodified 1215.6282 0.6281572 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 41.306 39.526 2 4.358E-14 18374 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 204.36 199 1752600000 158910000 163260000 111320000 1215200 0 1324700 150720000 130710000 140910000 2262900 1657700 0 125270000 104810000 112580000 0 0 0 189170000 185300000 173140000 0 0 0 4763 60 4641 89402;89403;89404;89405;89406;89407;89408;89409;89410;89411;89412;89413;89414;89415;89416;89417;89418;89419;89420 54593;54594;54595;54596;54597;54598;54599;54600;54601;54602;54603;54604 54604 12 EIMAPLFQK Unmodified 1075.5736 0.57360243 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.224 36.55 2 0.039498 18261 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 60.972 48.616 199180000 42670000 44426000 45011000 0 0 0 12407000 14413000 11128000 0 0 0 4164900 5753800 4003800 0 0 0 4336500 6057700 4808800 0 0 0 4764 119 4642 89421;89422;89423;89424;89425;89426;89427;89428;89429;89430;89431;89432 54605;54606;54607;54608;54609;54610 54605 3 EIMQVALNQAK Unmodified 1243.6595 0.65945733 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.521 27.186 2 4.5758E-10 9043 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 149.65 138.16 3632900000 198990000 189180000 199940000 20739000 19225000 0 257260000 309060000 298120000 12743000 12757000 0 287540000 325680000 341380000 0 3865100 0 390480000 394860000 361330000 0 0 9748400 4765 107 4643 89433;89434;89435;89436;89437;89438;89439;89440;89441;89442;89443;89444;89445;89446;89447;89448;89449;89450;89451;89452 54611;54612;54613;54614;54615;54616;54617;54618;54619;54620;54621;54622;54623;54624;54625;54626;54627 54621 17 EINDTWGHNTGDEILR Unmodified 1868.8653 0.86530402 579 P0AA89 dosC Diguanylate cyclase DosC yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 29.643 28.505 3 0.042759 13196 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 40.962 34.234 25525000 9565900 9370500 6589000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4766 579 4644 89453;89454;89455 54628 54628 0 EINGVEDR Unmodified 930.44067 0.44067401 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.06 12.558 2 0.015132 3052 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 70.69 56.704 158200000 8249800 8080800 0 0 0 0 35583000 28391000 0 6063600 5276900 5951300 19203000 19061000 18366000 1787700 993380 1195500 0 0 0 0 0 0 4767 78 4645 89456;89457;89458;89459;89460;89461;89462;89463;89464;89465;89466;89467;89468 54629;54630 54630 2 EINQHHR Unmodified 932.45766 0.45766147 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.0591 6.7044 2 0.0014403 1478 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 129.96 126.5 101840000 0 0 0 181710 226470 179770 19571000 16740000 18218000 6975500 6930200 5214700 3085400 0 0 1332900 0 0 7138000 6602500 4877000 2353200 2218600 0 4768 143 4646 89469;89470;89471;89472;89473;89474;89475;89476;89477;89478;89479;89480;89481;89482;89483;89484;89485 54631;54632;54633;54634;54635;54636;54637;54638;54639 54631 9 EINWLNLK Unmodified 1028.5655 0.56548059 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.644 40.945 2 0.00099954 19164 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 114.19 89.554 217870000 14046000 14857000 16457000 0 0 0 19732000 19209000 17236000 0 0 0 14250000 14918000 14236000 0 0 0 25471000 25327000 22128000 0 0 0 4769 248 4647 89486;89487;89488;89489;89490;89491;89492;89493;89494;89495;89496;89497 54640;54641;54642;54643;54644;54645;54646;54647;54648;54649 54648 10 EIPDEVHVDPYLCTYYYEINNQKPPFNDVR Unmodified 3726.7301 0.73006267 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 2 2 1 2 2 2 1 2 2 48.562 47.228 3;4;5 5.7779E-24 22819 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 177.8 175.85 14221000000 4128300000 4042800000 3267200000 0 0 2447500 338790000 371580000 340040000 0 2040200 0 261500000 224140000 252730000 0 0 0 298270000 338040000 353590000 0 0 0 4770 1217 4648 89498;89499;89500;89501;89502;89503;89504;89505;89506;89507;89508;89509;89510;89511;89512;89513;89514;89515;89516;89517;89518;89519;89520;89521;89522;89523;89524;89525 54650;54651;54652;54653;54654;54655;54656;54657;54658;54659;54660;54661;54662;54663;54664;54665;54666;54667;54668;54669 54664 20 EIPFLYASSAATYGGR Unmodified 1701.8362 0.83623572 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 2 2 2 2 2 2 2 46.612 45.003 2;3 1.117E-23 22290 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 205.12 193.54 488110000 32054000 37504000 35133000 0 0 0 50940000 44255000 46178000 15343000 12037000 14516000 25908000 25182000 26521000 0 0 0 39937000 41668000 40937000 0 0 0 4771 1716 4649 89526;89527;89528;89529;89530;89531;89532;89533;89534;89535;89536;89537;89538;89539;89540;89541;89542;89543;89544;89545;89546;89547;89548;89549;89550;89551;89552;89553 54670;54671;54672;54673;54674;54675;54676;54677;54678;54679;54680;54681;54682;54683 54674 14 EIPILSDELQLK Unmodified 1396.7813 0.7813466 155 P07026 sdiA Regulatory protein SdiA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.804 48.398 2 0.001661 23580 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 68.485 64.439 97618000 4973900 3574400 3399200 0 0 0 9809300 9567700 10414000 0 0 0 7056800 6109300 4741100 0 0 0 12926000 12564000 12482000 0 0 0 4772 155 4650 89554;89555;89556;89557;89558;89559;89560;89561;89562;89563;89564;89565 54684 54684 1 EIPMRPGQLFMDPK Unmodified 1657.832 0.83201874 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 1 1 1 2 1 1 37.104 35.277 2;3 2.2366E-05 17511 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.54 100.69 15299000000 1818400000 1751300000 1665000000 2215100 2227500 0 3089000000 3148600000 3045800000 35332000 37441000 34422000 98132000 113760000 101550000 2461500 0 0 137330000 101800000 113830000 0 0 0 4773 1755;1756 4651 89566;89567;89568;89569;89570;89571;89572;89573;89574;89575;89576;89577;89578;89579;89580;89581;89582;89583;89584;89585;89586;89587;89588;89589;89590;89591;89592;89593 54685;54686;54687;54688;54689;54690;54691;54692;54693;54694;54695;54696;54697;54698;54699;54700;54701;54702;54703;54704 54692 20 EIPMRPGQLFMDPK Oxidation (M) 1673.8269 0.82693336 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 32.389 30.877 2 2.8624E-05 15494 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 91.245 84.951 209630000 23064000 15310000 18800000 0 0 0 54345000 52168000 45945000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4774 1755;1756 4651 89594;89595;89596;89597;89598;89599;89600;89601;89602;89603;89604;89605 54705;54706;54707;54708;54709;54710;54711;54712 54710 605;606 8 EIPQVAGSLEEALNELDLDR Unmodified 2210.1067 0.1066565 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 55.408 53.94 2;3 4.0985E-69 26898 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 315.73 303.37 1462900000 218660000 177690000 201460000 0 0 0 73168000 80203000 43951000 0 0 0 112540000 103340000 102960000 0 0 0 111410000 118490000 119030000 0 0 0 4775 508 4652 89606;89607;89608;89609;89610;89611;89612;89613;89614;89615;89616;89617;89618;89619;89620;89621;89622;89623;89624;89625;89626;89627;89628 54713;54714;54715;54716;54717;54718;54719;54720;54721;54722;54723;54724;54725;54726;54727;54728;54729;54730 54722 18 EIPQVAGSLEEALNELDLDREFLK Unmodified 2727.3967 0.39669051 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.191 53.711 3 1.7338E-30 26312 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 189.57 170.24 4418800000 666480000 586790000 615110000 0 0 0 238110000 217050000 252350000 0 2764300 2653300 262710000 293190000 263180000 0 0 0 308310000 359140000 350970000 0 0 0 4776 508 4653 89629;89630;89631;89632;89633;89634;89635;89636;89637;89638;89639;89640;89641;89642 54731;54732;54733 54733 3 EIPQWFIK Unmodified 1059.5753 0.57531699 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.698 42.123 2 0.0027205 19749 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 98.133 69.621 1264100000 103550000 101510000 88008000 0 0 0 102020000 97862000 102710000 0 0 897170 100220000 92213000 83070000 0 0 0 130940000 133540000 127550000 0 0 0 4777 170 4654 89643;89644;89645;89646;89647;89648;89649;89650;89651;89652;89653;89654;89655 54734;54735;54736;54737;54738;54739;54740;54741;54742;54743;54744;54745 54743 12 EIPSDIVYQDDLVTAFR Unmodified 1979.984 0.98402217 725 P0ACE7 hinT HIT-like protein HinT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 1 1 1 1 1 2 1 1 1 1 1 52.629 51.351 2;3 1.1443E-18 25316 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 184.34 175.61 817860000 50796000 150680000 39404000 3288000 2230400 0 99120000 87245000 88953000 2509200 0 0 107230000 32594000 34387000 0 0 0 40248000 41528000 37655000 0 0 0 4778 725 4655 89656;89657;89658;89659;89660;89661;89662;89663;89664;89665;89666;89667;89668;89669;89670;89671;89672;89673;89674;89675 54746;54747;54748;54749;54750;54751;54752;54753;54754;54755;54756 54746 11 EIQDVEK Unmodified 859.42871 0.42871234 446 P0A8M6 yeeX UPF0265 protein YeeX yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.76 12.583 2 0.007515 3398 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 90.986 18.965 1356000000 253320000 266840000 219770000 0 10621000 0 0 0 315140000 0 0 0 0 0 0 0 0 0 153260000 0 137020000 0 0 0 4779 446 4656 89676;89677;89678;89679;89680;89681;89682;89683;89684 54757;54758;54759;54760;54761 54757 5 EIQDVEKK Unmodified 987.52368 0.52367535 446 P0A8M6 yeeX UPF0265 protein YeeX yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.715 11.256 2 0.0033847 2707 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.299 78.596 1172300000 73507000 70971000 59993000 10567000 0 0 115480000 101310000 103150000 90101000 81984000 76696000 51214000 45509000 42122000 15438000 6738000 7026700 58872000 51347000 55260000 17606000 18979000 18466000 4780 446 4657 89685;89686;89687;89688;89689;89690;89691;89692;89693;89694;89695;89696;89697;89698;89699;89700;89701;89702;89703;89704;89705;89706 54762;54763;54764;54765;54766;54767;54768;54769;54770;54771;54772;54773;54774;54775 54771 14 EIQETTWVFDDHAAIVVQR Unmodified 2256.1175 0.11749596 1661 P63264 cbpM Chaperone modulatory protein CbpM yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 43.739 41.815 3 9.5406E-05 16698 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 69.737 68.555 25033000 0 4255600 0 0 915350 810450 0 0 0 6790100 4673800 4677000 2911000 0 0 0 0 0 0 0 0 0 0 0 4781 1661 4658 89707;89708;89709;89710;89711;89712;89713 54776;54777;54778;54779 54778 3 EIQPWQAGQMR Oxidation (M) 1358.6401 0.64011887 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 23.209 22.46 2 0.00064941 9834 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 87.696 87.194 70791000 0 0 0 0 0 0 8868400 9513700 9225000 0 0 0 7013200 5539400 5140300 0 0 0 8618400 8020700 8851600 0 0 0 4782 1324 4659 89714;89715;89716;89717;89718;89719;89720;89721;89722 54780;54781;54782;54783;54784;54785;54786;54787;54788 54780 534 8 EIQPWQAGQMR Unmodified 1342.6452 0.64520425 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 2 2 2 1 1 2 2 2 2 2 2 1 1 28.366 26.963 2;3 4.5377E-05 11893 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 130.28 118.04 4684700000 0 0 36892000 0 0 0 396350000 400290000 381020000 2148800 0 3899500 534120000 475330000 469200000 0 0 0 657880000 667970000 654600000 2252000 2719100 0 4783 1324 4659 89723;89724;89725;89726;89727;89728;89729;89730;89731;89732;89733;89734;89735;89736;89737;89738;89739;89740;89741;89742;89743;89744;89745 54789;54790;54791;54792 54791 4 EIQTAYLESYSEYGQNIFDR Unmodified 2425.1074 0.10738478 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 2 2 2 1 1 1 2 2 2 51.14 49.861 2;3 2.6298E-81 24511 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 379.86 367.57 555460000 158070000 65054000 59664000 781890 0 0 72782000 62184000 66490000 0 0 0 8026300 6468900 7878500 0 0 0 13607000 16991000 17456000 0 0 0 4784 757 4660 89746;89747;89748;89749;89750;89751;89752;89753;89754;89755;89756;89757;89758;89759;89760;89761;89762;89763;89764;89765 54793;54794;54795;54796;54797;54798;54799;54800;54801;54802 54798 9 EISCVDSAELGK Unmodified 1306.6075 0.60748134 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 2 1 1 1 1 22.014 22.004 2 7.4947E-07 9061 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.97 152.97 1603200000 117030000 115180000 96291000 0 0 0 161520000 143800000 147310000 0 0 0 113730000 108770000 127480000 0 0 0 172370000 151410000 148270000 0 0 0 4785 1360 4661 89766;89767;89768;89769;89770;89771;89772;89773;89774;89775;89776;89777;89778;89779 54803;54804;54805;54806;54807;54808;54809;54810;54811;54812;54813;54814 54806 12 EISEALK Unmodified 788.42798 0.42798405 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 14.299 15.159 2 0.010377 4684 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 86.866 45.946 460710000 0 60741000 69948000 351020 0 446510 0 0 101760000 0 0 0 78189000 74713000 74555000 0 0 0 0 0 0 0 0 0 4786 671 4662 89780;89781;89782;89783;89784;89785;89786;89787 54815 54815 1 EISEDDDRR Unmodified 1133.4949 0.49489442 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 8.5299 9.3923 2;3 0.00028661 2310 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 95.502 86.543 744680000 0 0 0 0 0 0 50465000 26822000 24310000 0 0 0 81833000 38314000 14282000 0 0 0 180190000 156970000 171490000 0 0 0 4787 385 4663 89788;89789;89790;89791;89792;89793;89794;89795;89796;89797;89798;89799;89800;89801;89802;89803;89804;89805 54816;54817;54818;54819;54820;54821;54822;54823;54824;54825;54826;54827;54828;54829;54830 54829 15 EISLAPVNK Unmodified 969.5495 0.54949617 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By MS/MS 1 24.165 22.565 2 0.013894 8054 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 68.787 43.337 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4788 1300 4664 89806 54831 54831 1 EISLMKPGSLLINASR Unmodified 1727.9604 0.96039038 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 41.341 39.67 2;3 7.9043E-14 19395 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 176.51 170.85 1655500000 398970000 364440000 331180000 1274700 1208500 1474400 68101000 65138000 56404000 0 0 0 48962000 53471000 54355000 0 0 0 73173000 74118000 63232000 0 0 0 4789 555 4665 89807;89808;89809;89810;89811;89812;89813;89814;89815;89816;89817;89818;89819;89820;89821;89822;89823;89824;89825;89826;89827;89828;89829;89830;89831;89832;89833 54832;54833;54834;54835;54836;54837;54838;54839;54840;54841;54842;54843;54844;54845;54846;54847;54848;54849;54850;54851;54852;54853 54838 21 EISLSEAPNFAEAIINNQIQGR Unmodified 2413.2238 0.22375194 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 54.497 53.057 2 1.5708E-21 26315 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 232.13 216.58 136830000 0 0 0 8490500 9246900 9839500 19838000 28654000 32122000 0 0 0 0 0 0 0 0 0 0 22418000 0 0 0 6218800 4790 1284 4666 89834;89835;89836;89837;89838;89839;89840;89841 54854 54854 1 EISMSIK Unmodified 806.42079 0.42079019 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 20.971 21.075 1;2 0.0013371 8331 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 147.69 92.929 3117700000 461820000 345060000 372990000 9554900 8862100 8945800 156450000 149250000 136350000 25807000 25401000 25968000 190150000 153760000 202470000 14134000 11483000 13616000 228250000 261750000 268470000 18115000 14600000 14482000 4791 368 4667 89842;89843;89844;89845;89846;89847;89848;89849;89850;89851;89852;89853;89854;89855;89856;89857;89858;89859;89860;89861;89862;89863;89864;89865;89866;89867;89868 54855;54856;54857;54858;54859;54860;54861;54862;54863;54864;54865;54866;54867;54868;54869;54870;54871;54872;54873;54874;54875;54876 54870 22 EISMSIKR Unmodified 962.5219 0.52190122 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 15.472 15.751 2 0.056832 3773 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 60.76 40.205 14881000 0 0 0 0 2086000 0 0 0 0 1888900 3184100 3529900 0 0 0 0 0 0 0 0 0 2259600 0 1932100 4792 368 4668 89869;89870;89871;89872;89873;89874 54877 54877 1 EISNPENLMLSEELR Unmodified 1772.8615 0.86146419 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 43.367 42.61 2;3 3.3616E-15 15069 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 249.25 239.82 627880000 0 0 0 0 0 0 0 2925100 0 2675100 0 2073400 5039600 0 0 237200000 179530000 198430000 0 0 0 0 0 0 4793 1005 4669 89875;89876;89877;89878;89879;89880;89881;89882;89883;89884 54878;54879;54880;54881;54882;54883 54880 6 EISPDFINVK Unmodified 1160.6077 0.60773933 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 36.261 34.478 2 0.00024202 17041 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.4 67.272 556940000 33251000 0 0 0 0 0 70197000 88338000 83847000 8309100 0 0 55261000 47094000 44046000 0 0 0 57214000 64528000 0 4858900 0 0 4794 1916 4670 89885;89886;89887;89888;89889;89890;89891;89892;89893;89894;89895;89896;89897 54884;54885;54886;54887;54888;54889 54886 6 EISSCSNVWDFQAR Unmodified 1697.7468 0.74676879 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.928 36.245 2 5.8213E-35 17516 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 256.48 252.46 3690800000 262400000 243180000 220730000 1007200 1072600 1223700 403290000 381000000 403740000 0 0 0 299530000 244740000 249480000 0 0 0 332780000 315720000 330890000 0 0 0 4795 441 4671 89898;89899;89900;89901;89902;89903;89904;89905;89906;89907;89908;89909;89910;89911;89912 54890;54891;54892;54893;54894;54895;54896;54897;54898;54899;54900;54901 54894 12 EISSHDSSTNGLINR Unmodified 1628.7754 0.77542638 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.011 15.81 2 3.1753E-15 5326 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 224.66 221.01 105250000 9793700 10646000 9721300 0 0 0 9321600 13397000 14742000 0 0 0 5139600 6432300 6704400 0 0 0 7500300 4593200 7257900 0 0 0 4796 277 4672 89913;89914;89915;89916;89917;89918;89919;89920;89921;89922;89923;89924 54902;54903;54904;54905 54903 4 EISTTIAFVR Unmodified 1135.6237 0.62372375 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 4 6 6 2 2 2 3 3 4 3 2 2 3 1 2 2 2 2 3 5 3 36.871 35.19 2;3 1.0736E-05 11802 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 153.71 149.02 26622000000 730970000 681500000 598050000 2937700000 2827900000 2892100000 856260000 781370000 788810000 308260000 276630000 282520000 457550000 437300000 459770000 145030000 85581000 85226000 783450000 799940000 787480000 3049300000 2720000000 2849700000 4797 939 4673 89925;89926;89927;89928;89929;89930;89931;89932;89933;89934;89935;89936;89937;89938;89939;89940;89941;89942;89943;89944;89945;89946;89947;89948;89949;89950;89951;89952;89953;89954;89955;89956;89957;89958;89959;89960;89961;89962;89963;89964;89965;89966;89967;89968;89969;89970;89971;89972;89973;89974;89975;89976;89977;89978;89979;89980;89981;89982;89983;89984;89985;89986;89987;89988;89989;89990 54906;54907;54908;54909;54910;54911;54912;54913;54914;54915;54916;54917;54918;54919;54920;54921;54922;54923;54924;54925;54926;54927;54928;54929;54930;54931;54932;54933;54934;54935;54936;54937;54938;54939;54940;54941;54942;54943;54944;54945;54946;54947;54948;54949;54950;54951;54952;54953;54954;54955;54956;54957;54958;54959;54960;54961;54962;54963;54964;54965;54966;54967;54968;54969;54970;54971;54972;54973;54974;54975;54976;54977;54978;54979;54980;54981;54982 54942 70 EISVYSEYDEFLK Unmodified 1620.7559 0.75591971 260 P0A6L7 uxaB Altronate oxidoreductase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 48.206 46.942 2 5.0919E-05 23111 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 106.62 89.705 43584000 0 0 0 0 0 0 0 9101200 0 0 0 0 6024300 5158100 6087100 0 0 0 6459100 4664200 6089600 0 0 0 4798 260 4674 89991;89992;89993;89994;89995;89996;89997 54983;54984;54985 54983 2 EISYAEK Unmodified 838.40725 0.40724861 1556 P42616 yqjC Protein YqjC yes yes 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 12.313 13.168 2 0.07583 3767 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 56.122 28.955 80318000 0 32669000 0 0 0 0 0 0 0 0 0 0 0 0 4500000 0 0 0 0 0 43149000 0 0 0 4799 1556 4675 89998;89999;90000;90001 54986;54987 54986 2 EISYIHAEAYAAGELK Unmodified 1763.873 0.87301516 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 2 2 2 2 2 2 2 33.094 31.624 2;3 1.1669E-19 15400 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 202.32 184.95 250170000 17593000 0 8861400 0 0 0 26833000 29715000 26729000 0 0 0 29416000 20499000 18946000 0 0 0 25074000 21544000 24957000 0 0 0 4800 1137 4676 90002;90003;90004;90005;90006;90007;90008;90009;90010;90011;90012;90013;90014;90015;90016;90017;90018;90019;90020;90021;90022;90023 54988;54989;54990;54991;54992;54993;54994;54995;54996;54997 54988 8 EITAEETAELLK Unmodified 1345.6977 0.69767655 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.498 34.711 2 2.8567E-12 16967 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 198.72 176.08 400130000 11493000 8621700 7244900 2431700 2226000 0 61172000 57879000 52063000 12057000 11259000 10917000 19546000 19863000 18822000 0 0 0 31607000 32372000 29843000 4523800 2756700 3435100 4801 633 4677 90024;90025;90026;90027;90028;90029;90030;90031;90032;90033;90034;90035;90036;90037;90038;90039;90040;90041;90042;90043 54998;54999;55000;55001;55002;55003;55004;55005;55006;55007;55008;55009;55010;55011;55012;55013;55014;55015 55002 17 EITEPQFAYGMEGLLQQR Unmodified 2109.0201 0.0200901 282 P0A6U8 glgA Glycogen synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 52.177 50.886 2 6.1981E-17 25108 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 158.11 135.88 33658000 0 0 0 0 0 0 10953000 9479600 6668000 0 0 0 2332700 1939900 2284000 0 0 0 0 0 0 0 0 0 4802 282 4678 90044;90045;90046;90047;90048;90049 55016 55016 1 EITGGKK Unmodified 731.41775 0.41775372 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 5.9419 6.702 2 0.08148 1205 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.294 21.476 48689000 13462000 11941000 8914000 0 0 0 5299200 4301700 4771600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4803 1316 4679 90050;90051;90052;90053;90054;90055 55017;55018 55018 2 EITGGLDDTQLR Unmodified 1316.6572 0.65720872 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.582 26.253 2 1.56E-08 12225 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 195.79 191.17 640100000 43394000 51587000 51437000 0 0 0 59847000 53624000 53359000 1898100 1788900 1717500 45492000 42102000 38713000 0 0 0 66349000 69062000 59730000 0 0 0 4804 1586 4680 90056;90057;90058;90059;90060;90061;90062;90063;90064;90065;90066;90067;90068;90069;90070 55019;55020;55021;55022;55023;55024;55025;55026;55027;55028;55029 55020 11 EITHQLFLLGCGAQMLK Unmodified 1958.0118 0.01177402 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 46.958 45.327 3 9.7612E-05 22634 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 52.42 47.803 166700000 11028000 15289000 13289000 0 0 0 34163000 38268000 28820000 0 0 1581500 0 0 0 0 0 0 0 0 0 7789800 9513900 6956000 4805 1413 4681 90071;90072;90073;90074;90075;90076;90077;90078;90079;90080 55030 55030 1 EITHQLFLLGCGAQMLKYASPPMAQAWCQVMLDTR Unmodified 4063.9603 0.96029586 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 47.702 46.397 3 0.1713 21754 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 5.7987 4.3778 20652000 6522200 6959900 0 0 0 0 0 0 0 0 0 0 0 7169800 0 0 0 0 0 0 0 0 0 0 4806 1413 4682 90081;90082;90083 55031 55031 1 EITIAAAK Unmodified 815.47527 0.4752686 727 P0ACF4 hupB DNA-binding protein HU-beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 17.197 17.697 1;2 8.6069E-05 5163 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 147.69 73.719 25549000000 1968100000 1897400000 1908600000 63814000 43720000 35942000 1930800000 1923100000 2019600000 189970000 172710000 183350000 1839400000 1852400000 1691700000 638530000 482890000 503240000 1870000000 1953100000 1902600000 169050000 163140000 145810000 4807 727 4683 90084;90085;90086;90087;90088;90089;90090;90091;90092;90093;90094;90095;90096;90097;90098;90099;90100;90101;90102;90103;90104;90105;90106;90107;90108;90109;90110;90111;90112;90113;90114;90115;90116;90117;90118;90119;90120;90121;90122;90123;90124;90125;90126;90127;90128;90129;90130;90131;90132 55032;55033;55034;55035;55036;55037;55038;55039;55040;55041;55042;55043;55044;55045;55046;55047;55048;55049;55050;55051;55052;55053;55054;55055;55056;55057;55058;55059;55060;55061;55062 55043 27 EITLEAAR Unmodified 901.4869 0.48689592 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.072 20.283 2 1.8908E-06 6053 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 189.62 90.234 7009800000 140890000 115770000 124830000 0 0 0 111950000 0 102630000 401270000 388750000 380420000 164190000 139210000 128860000 649240000 618150000 682380000 152070000 139690000 145830000 920810000 765560000 737280000 4808 935 4684 90133;90134;90135;90136;90137;90138;90139;90140;90141;90142;90143;90144;90145;90146;90147;90148;90149;90150;90151;90152 55063;55064;55065;55066;55067;55068;55069;55070;55071;55072;55073;55074;55075;55076;55077;55078;55079;55080;55081;55082;55083;55084;55085;55086;55087;55088;55089;55090;55091;55092 55063 30 EITLEAARYEDESLNLGDYVEDQIESVTFDR Unmodified 3618.6849 0.6849462 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 55.007 54.039 3 3.3982E-82 21504 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 283.41 281.69 753660000 0 0 0 0 0 0 0 0 0 22192000 18222000 16720000 0 0 0 166820000 192430000 166240000 0 0 0 62231000 56399000 52403000 4809 935 4685 90153;90154;90155;90156;90157;90158;90159;90160;90161 55093;55094;55095;55096;55097 55097 5 EITLEPADNAR Unmodified 1227.6095 0.60953025 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.785 22.178 2 2.5046E-07 9444 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 186.25 182.84 602290000 71590000 74423000 62061000 0 2648600 1846400 54637000 59811000 61545000 4366700 0 0 30624000 26577000 22882000 0 0 0 41624000 41381000 43851000 2427100 0 0 4810 530 4686 90162;90163;90164;90165;90166;90167;90168;90169;90170;90171;90172;90173;90174;90175;90176;90177 55098;55099;55100;55101;55102;55103;55104;55105;55106;55107;55108;55109;55110 55104 13 EITPSTELR Unmodified 1044.5451 0.54513908 1840 P76243 yeaO Uncharacterized protein YeaO yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 18.931 19.417 2 0.11205 7482 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 41.448 20.148 54388000 1855300 0 2966800 0 0 0 31970000 6922800 4839800 0 0 0 5833200 0 0 0 0 0 0 0 0 0 0 0 4811 1840 4687 90178;90179;90180;90181;90182;90183 55111 55111 1 EITPVNIEEELK Unmodified 1412.7399 0.73987572 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.607 39.019 2 1.4863E-08 15833 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 172.56 163.6 2501500000 200970000 192120000 188510000 4872300 4926000 4786200 195140000 0 184490000 25573000 17895000 19756000 203340000 192790000 185180000 12746000 8013900 9020800 273160000 279890000 248450000 17228000 16322000 16358000 4812 882 4688 90184;90185;90186;90187;90188;90189;90190;90191;90192;90193;90194;90195;90196;90197;90198;90199;90200;90201;90202;90203;90204;90205;90206 55112;55113;55114;55115;55116;55117;55118;55119;55120;55121;55122;55123;55124;55125;55126;55127;55128;55129;55130;55131;55132;55133;55134 55115 20 EITSTDDFYR Unmodified 1245.5513 0.55134667 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.054 24.834 2 5.5547E-10 11292 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 201.97 201.97 7081900000 503180000 494310000 471620000 2743800 2138000 2371100 781070000 714770000 684500000 2754100 0 2317400 591830000 529700000 528860000 0 0 0 577710000 603280000 588700000 0 0 0 4813 771 4689 90207;90208;90209;90210;90211;90212;90213;90214;90215;90216;90217;90218;90219;90220;90221;90222;90223 55135;55136;55137;55138;55139;55140;55141;55142;55143;55144;55145;55146;55147;55148 55138 14 EIVDIVDYVMNYEISSK Unmodified 2015.9762 0.9761596 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 55.793 54.387 2 4.843E-19 26793 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 195.16 189.66 282990000 82923000 95199000 104870000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4814 1888 4690 90224;90225;90226 55149;55150 55150 2 EIVDYLLLSHLPK Unmodified 1538.8708 0.87083031 742 P0ACR4 yeiE Uncharacterized HTH-type transcriptional regulator YeiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 1 1 2 49.746 48.326 2;3 0.0013279 23590 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.507 82.864 268300000 33013000 27221000 26150000 979000 1520800 1421600 31391000 29487000 26522000 2499700 0 0 3210800 19011000 17352000 0 0 0 15420000 16561000 16536000 0 0 0 4815 742 4691 90227;90228;90229;90230;90231;90232;90233;90234;90235;90236;90237;90238;90239;90240;90241;90242;90243;90244;90245;90246;90247;90248;90249;90250;90251 55151;55152;55153;55154;55155;55156;55157;55158;55159;55160;55161;55162;55163 55159 12 EIVFTSGATESDNLAIK Unmodified 1793.9047 0.90470922 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.634 36.809 2 1.3645E-18 17908 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 224.24 212.7 182950000 18107000 13913000 0 2493900 2426700 2296200 18670000 13932000 15044000 0 1567300 1285700 13046000 11261000 8104300 0 0 0 18780000 19601000 15241000 2393500 2326100 2460900 4816 228 4692 90252;90253;90254;90255;90256;90257;90258;90259;90260;90261;90262;90263;90264;90265;90266;90267;90268;90269;90270 55164;55165;55166;55167;55168;55169;55170 55164 7 EIVPAAR Unmodified 754.43374 0.43373813 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.321 15.084 2 0.002439 4464 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 112.27 67.322 210370000 0 0 0 170890 451320 0 9630700 9606400 10317000 0 945260 0 27802000 24292000 24675000 0 0 0 34492000 30692000 35991000 0 1301200 0 4817 1233 4693 90271;90272;90273;90274;90275;90276;90277;90278;90279;90280;90281;90282;90283 55171;55172;55173;55174 55172 4 EIVSELDK Unmodified 931.48623 0.48622722 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 19.895 20.354 2 0.00093582 7574 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 116.88 69.839 1195100000 95635000 76044000 84612000 1692100 2025400 1452400 159200000 137200000 122740000 0 0 0 112350000 0 0 0 0 0 126750000 119270000 156130000 0 0 0 4818 245 4694 90284;90285;90286;90287;90288;90289;90290;90291;90292;90293;90294;90295;90296 55175;55176;55177;55178;55179;55180 55180 6 EIVSELDKHIIGQDNAK Unmodified 1907.9953 0.99525556 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 26.959 25.77 3;4 4.7198E-11 9419 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 132.59 129.35 1095300000 79645000 82324000 57537000 7968400 8281400 8891700 75803000 69058000 84508000 41393000 32937000 23098000 62589000 57638000 55550000 5566800 6448200 7001500 101760000 88257000 87382000 17403000 17994000 16249000 4819 245 4695 90297;90298;90299;90300;90301;90302;90303;90304;90305;90306;90307;90308;90309;90310;90311;90312;90313;90314;90315;90316;90317;90318;90319;90320;90321;90322;90323;90324;90325;90326;90327;90328;90329;90330;90331;90332;90333;90334;90335;90336;90337;90338;90339;90340;90341;90342;90343 55181;55182;55183;55184;55185;55186;55187;55188;55189;55190;55191;55192;55193;55194;55195;55196;55197;55198;55199;55200;55201;55202;55203;55204;55205;55206;55207;55208;55209;55210;55211 55188 31 EIVSELDKHIIGQDNAKR Unmodified 2064.0964 0.096366586 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 3 3 2 2 3 3 3 23.05 22.314 3;4;5 1.1993E-07 8064 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 86.005 76.908 235920000 0 0 0 12125000 12800000 15499000 0 0 0 38208000 20660000 32345000 0 0 0 11713000 7247000 5451200 0 0 0 27585000 26380000 25911000 4820 245 4696 90344;90345;90346;90347;90348;90349;90350;90351;90352;90353;90354;90355;90356;90357;90358;90359;90360;90361;90362;90363;90364;90365;90366;90367;90368;90369;90370;90371;90372;90373;90374;90375;90376 55212;55213;55214;55215;55216;55217;55218;55219;55220;55221;55222;55223;55224;55225;55226;55227;55228 55216 16 EIWFLCR Unmodified 1022.5008 0.50077184 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.279 44.802 2 0.00056307 15908 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 150.82 146.88 2963000000 157870000 169260000 153230000 46278000 42442000 42484000 263310000 243270000 244380000 3810300 4349800 4271100 224920000 203000000 237050000 1664400 2323500 0 220710000 234900000 214380000 82671000 85016000 81441000 4821 679 4697 90377;90378;90379;90380;90381;90382;90383;90384;90385;90386;90387;90388;90389;90390;90391;90392;90393;90394;90395;90396;90397;90398;90399;90400 55229;55230;55231;55232;55233;55234;55235;55236;55237;55238;55239;55240;55241;55242;55243;55244;55245;55246;55247;55248;55249;55250 55244 22 EIYAPAGR Unmodified 875.45012 0.45011648 1884 P77202 dsbG Thiol:disulfide interchange protein DsbG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.15 15.957 2 0.074651 5107 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 54.571 33.024 264650000 21919000 21585000 20286000 0 0 0 25938000 29805000 25994000 0 0 0 15161000 12161000 14520000 0 0 0 24896000 25708000 26681000 0 0 0 4822 1884 4698 90401;90402;90403;90404;90405;90406;90407;90408;90409;90410;90411;90412 55251 55251 1 EIYDIVLESLETSLR Unmodified 1778.9302 0.93019569 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 55.831 54.379 2 0.00029398 27144 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 96.103 91.403 202490000 14221000 23556000 44295000 0 0 0 7607600 6076400 0 0 0 0 47825000 31687000 18656000 0 0 0 0 8569700 0 0 0 0 4823 1100 4699 90413;90414;90415;90416;90417;90418;90419;90420;90421 55252;55253;55254;55255;55256;55257 55255 0 EIYEEPK Unmodified 906.43346 0.43346336 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 14.448 14.703 2 0.030014 3777 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 67.035 67.035 68609000 0 0 0 0 0 0 0 0 0 4700200 4999800 4299000 20640000 18416000 0 1832500 1818300 1206800 0 0 0 3526000 3671000 3498500 4824 1754 4700 90422;90423;90424;90425;90426;90427;90428;90429;90430;90431;90432 55258;55259;55260;55261;55262;55263 55261 6 EIYEQPNAIK Unmodified 1203.6136 0.61355299 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.11 20.429 2 0.00015316 7597 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 125.58 120.22 3444600000 245800000 231020000 228340000 1340400 1756000 1584700 334100000 333810000 350390000 0 2187200 1349900 274640000 249000000 234490000 0 0 0 346050000 325710000 280660000 1399300 962230 0 4825 1137 4701 90433;90434;90435;90436;90437;90438;90439;90440;90441;90442;90443;90444;90445;90446;90447;90448;90449;90450;90451 55264;55265;55266;55267;55268;55269;55270;55271;55272;55273;55274 55274 11 EIYHAWDAR Unmodified 1159.5411 0.54105675 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 2 2 19.558 19.956 2;3 0.00011671 7839 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.2 150.9 1637200000 259700000 278920000 267830000 0 554480 619420 213230000 208430000 192780000 1406200 1043100 980260 31571000 33398000 32513000 0 0 0 30267000 39907000 44026000 0 0 0 4826 1423 4702 90452;90453;90454;90455;90456;90457;90458;90459;90460;90461;90462;90463;90464;90465;90466;90467;90468;90469;90470;90471;90472;90473;90474;90475;90476;90477;90478;90479 55275;55276;55277;55278;55279;55280;55281;55282;55283;55284;55285 55279 11 EIYPNGTETHTYVDVPGLSTMLEGASR Unmodified 2936.3862 0.38620218 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.89 48.484 3 3.1635E-11 23841 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.58 128.04 207610000 22993000 23573000 22911000 0 0 0 15125000 14598000 17394000 0 0 0 15882000 12275000 14027000 0 0 0 13548000 16986000 18298000 0 0 0 4827 1375 4703 90480;90481;90482;90483;90484;90485;90486;90487;90488;90489;90490;90491 55286;55287;55288;55289;55290;55291;55292;55293;55294 55290 9 EKDGAVEAEDR Unmodified 1217.5524 0.5524093 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 4 2 2 2 2 2 2 2 9.9815 10.789 2;3 3.8656E-14 2342 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 214.81 202.76 9416900000 913550000 858270000 775220000 0 0 0 84969000 102830000 116310000 0 0 0 1200100000 1057500000 936560000 0 0 0 1218200000 1097500000 1055900000 0 0 0 4828 396 4704 90492;90493;90494;90495;90496;90497;90498;90499;90500;90501;90502;90503;90504;90505;90506;90507;90508;90509;90510;90511;90512;90513;90514;90515;90516;90517;90518 55295;55296;55297;55298;55299;55300;55301;55302;55303;55304;55305;55306;55307;55308;55309;55310;55311;55312;55313;55314;55315;55316;55317;55318;55319;55320;55321;55322;55323;55324;55325;55326;55327;55328;55329;55330;55331 55330 37 EKDGNITVDFDDVVIR Unmodified 1833.9109 0.91085723 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.687 39.089 3 6.6759E-08 19287 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 111.64 107.8 346410000 15713000 12989000 0 5947700 5544400 5793000 0 40750000 38487000 17712000 10815000 16091000 25740000 0 25245000 4275500 3069600 3280200 39451000 41832000 6831900 7986300 8169400 10685000 4829 146 4705 90519;90520;90521;90522;90523;90524;90525;90526;90527;90528;90529;90530;90531;90532;90533;90534;90535;90536;90537;90538;90539 55332;55333;55334;55335;55336;55337;55338;55339;55340;55341;55342;55343 55337 12 EKDLSWITQHAEPFGIEITVR Unmodified 2468.27 0.26997386 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 48.139 46.83 2;4 5.5197E-07 22744 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.05 97.321 1316900000 104200000 93266000 77692000 0 0 0 149870000 129630000 141900000 0 0 0 76170000 80332000 101930000 0 0 0 129920000 119640000 112390000 0 0 0 4830 1294 4706 90540;90541;90542;90543;90544;90545;90546;90547;90548;90549;90550;90551;90552;90553;90554;90555;90556;90557;90558;90559;90560;90561 55344;55345;55346;55347;55348;55349;55350;55351;55352 55346 6 EKDPSLSFR Unmodified 1077.5455 0.54547343 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 16.926 17.438 2;3 0.00055249 4541 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 80.231 58.768 1144400000 107690000 105260000 107670000 7784100 8610600 10470000 56577000 59652000 58497000 16310000 14953000 12313000 49916000 43825000 60792000 8579500 5197400 5226400 124030000 123500000 124190000 14138000 11773000 7444100 4831 150 4707 90562;90563;90564;90565;90566;90567;90568;90569;90570;90571;90572;90573;90574;90575;90576;90577;90578;90579;90580;90581;90582;90583;90584;90585;90586;90587;90588;90589;90590;90591;90592;90593;90594;90595;90596;90597;90598;90599;90600;90601;90602;90603;90604;90605;90606;90607 55353;55354;55355;55356;55357;55358;55359;55360;55361;55362;55363;55364;55365;55366;55367;55368;55369;55370;55371;55372;55373;55374;55375;55376;55377;55378;55379;55380;55381;55382;55383;55384;55385;55386;55387 55379 31 EKDQINR Unmodified 901.46174 0.4617438 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 4.6578 5.5908 2 0.0070117 1134 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 105.39 66.599 21148000 0 0 0 736640 692180 0 0 0 0 0 0 0 0 0 0 0 0 0 7730000 6451000 5538100 0 0 0 4832 1055 4708 90608;90609;90610;90611;90612 55388 55388 1 EKEFTFNK Unmodified 1041.5131 0.51311067 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.56 15.173 2 0.047187 4312 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 64.567 56.635 26549000 0 0 0 585880 607340 668960 0 0 0 3969800 2452700 2983600 2682400 3077300 0 0 0 0 0 3333800 5122200 1064900 0 0 4833 189 4709 90613;90614;90615;90616;90617;90618;90619;90620;90621;90622;90623 55389 55389 1 EKENNEDDATR Unmodified 1319.559 0.55895124 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 4.9832 5.8539 2;3 1.8951E-05 1345 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146.11 140.62 206100000 24310000 23919000 20525000 312970 446300 0 17316000 16758000 16007000 0 0 0 11817000 11808000 8570000 0 0 0 16406000 19527000 18383000 0 0 0 4834 1221 4710 90624;90625;90626;90627;90628;90629;90630;90631;90632;90633;90634;90635;90636;90637;90638;90639;90640;90641;90642;90643;90644;90645;90646;90647;90648;90649 55390;55391;55392;55393;55394;55395;55396;55397;55398;55399;55400;55401;55402;55403;55404;55405;55406;55407 55401 18 EKESLPQMLR Unmodified 1229.6438 0.64380726 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.173 21.911 3 0.00029319 9047 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 72.365 60.097 89517000 4537300 0 4162400 0 1790300 0 8558600 7524500 0 3897500 3222900 2911000 8768300 7128400 7290000 0 726770 0 7521200 6363200 7387100 2967100 2874200 1886600 4835 324 4711 90650;90651;90652;90653;90654;90655;90656;90657;90658;90659;90660;90661;90662;90663;90664;90665;90666;90667 55408;55409;55410;55411;55412;55413;55414 55414 6 EKFAELR Unmodified 891.48142 0.48141661 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 14.333 14.37 1;2 0.00087531 3483 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 152.31 63.964 830700000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 393820000 223060000 209060000 0 0 0 2322700 2433000 0 4836 36 4712 90668;90669;90670;90671;90672;90673;90674;90675 55415;55416;55417 55416 3 EKFDFPVVGVVPAIKPAAR Unmodified 2039.1568 0.156782 1201 P22634 murI Glutamate racemase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 41.695 39.967 4 0.11137 19510 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 26.956 26.809 62010000 7078700 8112600 0 0 0 0 7253200 5240300 5381900 0 0 0 5366900 4691900 3998500 0 0 0 6416600 8469300 0 0 0 0 4837 1201 4713 90676;90677;90678;90679;90680;90681;90682;90683;90684;90685 55418 55418 1 EKFDQLLLEAR Unmodified 1360.7351 0.73506511 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 34.57 33.331 2;3 6.8456E-10 15744 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.46 155.16 266030000 97091000 88477000 80464000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4838 1835 4714 90686;90687;90688;90689;90690;90691 55419;55420;55421;55422;55423;55424 55423 6 EKGEAYK Unmodified 823.40758 0.40758296 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.4487 5.3858 2 0.011913 980 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.561 64.251 85752000 0 0 0 614840 477140 705500 9327400 9712700 10013000 0 0 0 10761000 0 0 0 0 0 0 23105000 21036000 0 0 0 4839 660 4715 90692;90693;90694;90695;90696;90697;90698;90699;90700 55425;55426;55427;55428;55429 55428 5 EKGFHVER Unmodified 1000.509 0.50902834 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS 1 1 1 1 10.654 11.458 2 0.032598 2806 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 66.351 48.503 86916000 0 0 0 0 0 0 25772000 17853000 0 0 0 0 0 0 0 0 0 0 22255000 21037000 0 0 0 0 4840 1109 4716 90701;90702;90703;90704 55430;55431 55430 2 EKGISYETATFPWAASGR Unmodified 1969.9534 0.95339074 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 3 3 3 1 2 2 2 1 1 2 1 1 1 1 1 3 3 3 38.08 36.365 2;3;4 2.3332E-45 14149 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 332.7 301.1 5445100000 4529100 4167300 0 859670000 841980000 900170000 5421300 0 0 94995000 85419000 82035000 0 2268500 3400600 28821000 20740000 22583000 4087100 6571900 4706500 898310000 785750000 789470000 4841 542 4717 90705;90706;90707;90708;90709;90710;90711;90712;90713;90714;90715;90716;90717;90718;90719;90720;90721;90722;90723;90724;90725;90726;90727;90728;90729;90730;90731;90732;90733;90734;90735;90736;90737;90738;90739;90740 55432;55433;55434;55435;55436;55437;55438;55439;55440;55441;55442;55443;55444;55445;55446;55447;55448;55449;55450;55451;55452;55453;55454;55455 55440 23 EKIAAGASLVQIYSGFIFK Unmodified 2041.1248 0.12481317 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 53.16 51.808 3 0.0016885 18941 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 60.528 57.645 9178200 0 0 0 2610800 3437800 3129500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4842 335 4718 90741;90742;90743 55456;55457;55458 55457 3 EKIFEALESALATATK Unmodified 1720.9247 0.92471638 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 2 2 2 52.505 51.443 2;3 1.858E-39 20952 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 319.58 193.83 8835400000 11356000 11596000 8354400 0 0 0 3110500 3524100 0 392740000 322630000 315010000 2891000 0 4987200 952070000 2489600000 2382100000 5074200 0 4330500 651400000 711080000 563530000 4843 935 4719 90744;90745;90746;90747;90748;90749;90750;90751;90752;90753;90754;90755;90756;90757;90758;90759;90760;90761;90762;90763;90764;90765;90766;90767;90768;90769;90770;90771;90772;90773 55459;55460;55461;55462;55463;55464;55465;55466;55467;55468;55469;55470;55471;55472;55473;55474;55475;55476;55477;55478 55467 20 EKIFEALESALATATKK Unmodified 1849.0197 0.019679395 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 3 3 2 3 3 3 47.548 46.447 2;3;4 1.9415E-40 17228 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 227 227 1573000000 0 0 0 0 0 0 0 0 0 74729000 76250000 75064000 0 0 0 286370000 294350000 327400000 0 0 0 155790000 151530000 131530000 4844 935 4720 90774;90775;90776;90777;90778;90779;90780;90781;90782;90783;90784;90785;90786;90787;90788;90789;90790;90791;90792;90793;90794;90795;90796;90797 55479;55480;55481;55482;55483;55484;55485;55486;55487;55488;55489;55490;55491;55492;55493;55494;55495;55496;55497;55498 55479 20 EKILVAVGNISGIASVDDQVK Unmodified 2154.1896 0.18959827 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 42.177 40.025 3 4.1012E-05 14162 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 83.395 83.22 32908000 0 0 0 6588700 8968100 7468000 0 0 0 2763000 3935100 3184800 0 0 0 0 0 0 0 0 0 0 0 0 4845 783 4721 90798;90799;90800;90801;90802;90803 55499;55500;55501;55502 55501 3 EKLALLEQR Unmodified 1098.6397 0.63970816 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 2 3 2 1 1 1 2 2 3 1 1 1 1 2 1 1 1 2 2 2 20.509 20.605 2;3 5.7542E-05 6703 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 120.12 98.033 212300000 2796300 0 6012600 13451000 14777000 14898000 17072000 14523000 18194000 11213000 21713000 21012000 1648200 0 1448200 2317800 4291200 4156600 5179000 2969500 4147200 10105000 10443000 9935800 4846 1962 4722 90804;90805;90806;90807;90808;90809;90810;90811;90812;90813;90814;90815;90816;90817;90818;90819;90820;90821;90822;90823;90824;90825;90826;90827;90828;90829;90830;90831;90832;90833;90834;90835;90836;90837 55503;55504;55505;55506;55507;55508;55509;55510;55511;55512;55513;55514;55515 55509 13 EKLDEDCK Unmodified 1035.4543 0.45427516 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 9.1337 9.9187 2 0.094229 2053 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.815 46.459 14542000 2001700 2756500 0 0 0 0 0 0 0 0 0 0 0 1014200 0 0 0 0 2195100 3264800 3309500 0 0 0 4847 1634 4723 90838;90839;90840;90841;90842;90843 55516;55517 55517 2 EKLDNLVFVINCNLQR Unmodified 1974.0357 0.035680585 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 6 7 5 4 3 2 4 4 3 3 3 3 1 4 5 3 3 3 4 4 4 46.009 44.568 2;3;4 2.4409E-89 15833 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 359.9 349.24 44902000000 873910000 975230000 822380000 5447600000 5456500000 5204100000 898710000 910310000 800120000 659580000 606580000 577970000 650980000 590530000 626510000 195150000 306430000 309000000 954430000 1058000000 954420000 5005400000 5558100000 5460500000 4848 939 4724 90844;90845;90846;90847;90848;90849;90850;90851;90852;90853;90854;90855;90856;90857;90858;90859;90860;90861;90862;90863;90864;90865;90866;90867;90868;90869;90870;90871;90872;90873;90874;90875;90876;90877;90878;90879;90880;90881;90882;90883;90884;90885;90886;90887;90888;90889;90890;90891;90892;90893;90894;90895;90896;90897;90898;90899;90900;90901;90902;90903;90904;90905;90906;90907;90908;90909;90910;90911;90912;90913;90914;90915;90916;90917;90918;90919;90920;90921;90922;90923;90924;90925;90926;90927;90928;90929;90930 55518;55519;55520;55521;55522;55523;55524;55525;55526;55527;55528;55529;55530;55531;55532;55533;55534;55535;55536;55537;55538;55539;55540;55541;55542;55543;55544;55545;55546;55547;55548;55549;55550;55551;55552;55553;55554;55555;55556;55557;55558;55559;55560;55561;55562;55563;55564;55565;55566;55567;55568;55569;55570;55571;55572;55573;55574;55575;55576;55577;55578;55579;55580;55581;55582;55583;55584;55585;55586;55587;55588;55589;55590 55558 70 EKLEGYAEAK Unmodified 1136.5714 0.57135383 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 1 1 2 2 2 1 2 2 2 2 2 2 12.186 13.011 2;3 8.641E-05 3693 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.16 115.22 1585300000 116550000 139260000 74648000 0 1598300 0 174110000 149970000 135480000 0 582990 0 121280000 116690000 105360000 0 0 0 166390000 150420000 132930000 0 0 0 4849 158 4725 90931;90932;90933;90934;90935;90936;90937;90938;90939;90940;90941;90942;90943;90944;90945;90946;90947;90948;90949;90950;90951;90952;90953;90954;90955 55591;55592;55593;55594;55595;55596;55597;55598 55596 8 EKLESLLPLHLGQVAK Unmodified 1774.0353 0.035269879 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 38.424 36.707 4 0.13844 17791 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 22.456 22.236 47395000 0 6340800 0 0 0 0 4566600 6072200 7190400 0 0 0 2169000 3011700 2167700 0 0 0 5737700 4726800 5412500 0 0 0 4850 843 4726 90956;90957;90958;90959;90960;90961;90962;90963;90964;90965 55599;55600 55600 1 EKLPPGFQR Unmodified 1070.5873 0.58727866 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 1 1 3 3 3 3 3 3 3 2 4 2 1 1 3 3 3 4 3 4 15.91 16.42 2;3 0.00041954 5852 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 85.67 76.694 517570000 37737000 32826000 52102000 700070 171680 0 43756000 40717000 36680000 6687400 7613000 5518000 32890000 23911000 13415000 2126200 1003900 1113300 50321000 48256000 49771000 10794000 8903700 10558000 4851 547 4727 90966;90967;90968;90969;90970;90971;90972;90973;90974;90975;90976;90977;90978;90979;90980;90981;90982;90983;90984;90985;90986;90987;90988;90989;90990;90991;90992;90993;90994;90995;90996;90997;90998;90999;91000;91001;91002;91003;91004;91005;91006;91007;91008;91009;91010;91011;91012;91013;91014;91015;91016;91017;91018;91019;91020;91021;91022;91023;91024;91025;91026;91027 55601;55602;55603;55604;55605;55606;55607;55608;55609;55610;55611;55612;55613;55614;55615;55616;55617;55618;55619;55620;55621;55622;55623;55624;55625;55626;55627;55628;55629;55630;55631;55632;55633;55634;55635;55636 55616 29 EKLQELHI Unmodified 1008.5604 0.56039521 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.223 22.12 2 0.0032717 9085 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.04 92.973 173180000 23088000 26462000 19842000 0 0 0 23239000 16066000 16971000 0 0 0 6883800 7504600 8579300 0 0 0 6038400 7845200 10662000 0 0 0 4852 1577 4728 91028;91029;91030;91031;91032;91033;91034;91035;91036;91037;91038;91039 55637;55638;55639 55637 3 EKNELTYGFQSAQK Unmodified 1641.7999 0.79985021 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 20.146 20.447 2 6.6274E-06 7818 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 117.98 114.93 8890700 0 0 3911900 0 0 0 2638900 2339900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4853 658 4729 91040;91041;91042 55640 55640 1 EKNPDLIIGVGGCVASQEGEHIR Unmodified 2477.2333 0.23327077 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 2 2 2 2 2 1 30.88 29.382 3;4 1.8032E-35 13676 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 211.12 207.48 818540000 60125000 63266000 59317000 8921900 11847000 11442000 49052000 45574000 49474000 11938000 11673000 14562000 48887000 36734000 40823000 0 3963200 3942100 85287000 87345000 88546000 10273000 11477000 4074400 4854 862 4730 91043;91044;91045;91046;91047;91048;91049;91050;91051;91052;91053;91054;91055;91056;91057;91058;91059;91060;91061;91062;91063;91064;91065;91066;91067;91068;91069;91070;91071;91072;91073;91074;91075;91076;91077;91078;91079;91080;91081;91082;91083;91084 55641;55642;55643;55644;55645;55646;55647;55648;55649;55650;55651;55652;55653;55654;55655;55656;55657;55658;55659;55660;55661;55662;55663;55664;55665;55666;55667;55668;55669;55670;55671;55672;55673;55674;55675;55676 55669 36 EKPAHLAQSIR Unmodified 1248.6939 0.693869 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 11.319 12.151 2;3 0.00010493 3098 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.24 134.5 2655600000 184750000 199330000 193200000 0 0 0 265360000 248990000 267670000 0 0 0 215400000 211290000 211460000 0 0 0 208570000 196890000 252680000 0 0 0 4855 1510 4731 91085;91086;91087;91088;91089;91090;91091;91092;91093;91094;91095;91096;91097;91098;91099;91100;91101;91102;91103;91104;91105;91106;91107;91108 55677;55678;55679;55680;55681;55682;55683;55684;55685;55686;55687;55688;55689 55680 12 EKPAVLGHDEAAYSK Unmodified 1613.8049 0.80493559 481 P0A912 pal Peptidoglycan-associated lipoprotein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 2 3 1 3 2 2 3 2 1 3 3 3 1 1 12.854 13.529 2;3;4 3.8459E-06 3958 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 96.962 96.476 541810000 49897000 37265000 38079000 0 0 0 13382000 21744000 34112000 8427800 10824000 10486000 22453000 17561000 16500000 0 0 2783900 89418000 88026000 67312000 6406800 0 7132500 4856 481 4732 91109;91110;91111;91112;91113;91114;91115;91116;91117;91118;91119;91120;91121;91122;91123;91124;91125;91126;91127;91128;91129;91130;91131;91132;91133;91134;91135;91136;91137;91138;91139;91140;91141;91142;91143;91144;91145;91146;91147;91148;91149 55690;55691;55692;55693;55694;55695;55696;55697;55698;55699 55696 10 EKPTFVYHFPASQASLAQISTEDHR Unmodified 2858.3988 0.3987562 450 P0A8N7 epmA Elongation factor P--(R)-beta-lysine ligase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.407 31.967 4 0.036823 14671 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 38.78 36.203 155570000 10671000 10972000 13428000 0 0 0 11600000 13304000 10630000 0 0 0 8999300 8752300 13031000 0 0 0 15006000 18458000 20715000 0 0 0 4857 450 4733 91150;91151;91152;91153;91154;91155;91156;91157;91158;91159;91160;91161 55700;55701;55702 55702 3 EKPTWLEVDAGK Unmodified 1371.7034 0.70343063 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 25.894 24.769 2;3 1.7683E-11 11128 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 187.42 166.44 7700500000 1160400000 1210100000 1139200000 18197000 15653000 15850000 291420000 289880000 297770000 58692000 46137000 46089000 421930000 408210000 382110000 21606000 20188000 16748000 595810000 585140000 573800000 27882000 30631000 27010000 4858 375 4734 91162;91163;91164;91165;91166;91167;91168;91169;91170;91171;91172;91173;91174;91175;91176;91177;91178;91179;91180;91181;91182;91183;91184;91185;91186;91187;91188;91189;91190;91191;91192;91193;91194;91195;91196;91197;91198;91199;91200;91201;91202;91203;91204;91205;91206;91207 55703;55704;55705;55706;55707;55708;55709;55710;55711;55712;55713;55714;55715;55716;55717;55718;55719;55720;55721;55722;55723;55724;55725;55726;55727;55728;55729;55730;55731;55732;55733;55734;55735;55736;55737;55738;55739;55740;55741;55742;55743;55744;55745 55722 40 EKPTWLEVDAGKMEGTFK Unmodified 2065.019 0.019027468 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 2 2 1 2 2 36.627 34.533 3;4 0.00015014 13936 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 66.606 63.218 92702000 0 0 0 9405300 4734000 9111500 0 0 0 12576000 14737000 14198000 0 0 0 0 0 0 0 0 0 4567700 10824000 12547000 4859 375 4735 91208;91209;91210;91211;91212;91213;91214;91215;91216;91217;91218;91219;91220;91221;91222;91223 55746;55747;55748;55749;55750;55751;55752 55746 7 EKSPQIK Unmodified 828.47052 0.47051757 1628 P60716 lipA Lipoyl synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 8.5347 9.1653 2 0.13896 1893 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 57.471 34.849 86265000 7714300 5388200 6492900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4689200 3735000 5165800 17506000 12325000 23249000 4860 1628 4736 91224;91225;91226;91227;91228;91229;91230;91231;91232 55753;55754 55753 2 EKSVEELNTELLNLLR Unmodified 1899.0313 0.031306714 357 P0A7M6 rpmC 50S ribosomal protein L29 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.454 51.323 3 5.836E-24 18885 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 203.27 199.3 587740000 24948000 23351000 22457000 23169000 28580000 32248000 5735400 6069100 7393600 22416000 16854000 26016000 11281000 7907300 9025100 49611000 56777000 80271000 21966000 20892000 19345000 24266000 18912000 28247000 4861 357 4737 91233;91234;91235;91236;91237;91238;91239;91240;91241;91242;91243;91244;91245;91246;91247;91248;91249;91250;91251;91252;91253;91254;91255;91256 55755;55756;55757;55758;55759;55760;55761;55762;55763;55764;55765;55766;55767;55768;55769;55770 55756 14 EKTEEVIAENPGK Unmodified 1442.7253 0.72528829 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.645 13.485 2;3 1.4033E-61 3980 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 329.15 316.19 4595200000 305590000 284860000 279920000 0 0 0 446350000 448920000 392090000 0 0 0 402030000 367000000 352660000 0 0 0 437830000 457130000 420860000 0 0 0 4862 24 4738 91257;91258;91259;91260;91261;91262;91263;91264;91265;91266;91267;91268;91269;91270;91271;91272;91273;91274;91275;91276;91277;91278;91279;91280 55771;55772;55773;55774;55775;55776;55777;55778;55779;55780;55781;55782;55783;55784;55785;55786;55787;55788;55789;55790;55791;55792;55793 55777 23 EKTEEVIAENPGKK Unmodified 1570.8203 0.82025131 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 3 3 3 3 3 3 11.35 12.196 2;3;4 4.879E-81 3129 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 352.15 342.66 4766900000 470270000 466230000 397280000 2399300 2926800 0 435340000 412140000 404440000 0 0 0 358550000 297590000 284270000 0 0 0 413490000 403070000 418950000 0 0 0 4863 24 4739 91281;91282;91283;91284;91285;91286;91287;91288;91289;91290;91291;91292;91293;91294;91295;91296;91297;91298;91299;91300;91301;91302;91303;91304;91305;91306;91307;91308;91309;91310;91311;91312;91313;91314;91315;91316;91317;91318 55794;55795;55796;55797;55798;55799;55800;55801;55802;55803;55804;55805;55806;55807;55808;55809;55810;55811;55812;55813;55814;55815;55816;55817;55818;55819;55820;55821;55822;55823;55824;55825;55826;55827;55828 55801 35 EKVDATK Unmodified 789.42323 0.42323303 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 3 1 1 1 5.9092 6.617 1;2 0.00071969 949 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.71 89.035 966540000 0 0 0 7526100 8861300 8537000 40795000 56874000 57716000 11809000 9354000 9397100 97192000 78321000 70989000 12398000 7219200 7042100 158780000 146580000 153810000 7497200 7592700 8247700 4864 353 4740 91319;91320;91321;91322;91323;91324;91325;91326;91327;91328;91329;91330;91331;91332;91333;91334;91335;91336;91337;91338;91339;91340;91341;91342;91343;91344;91345;91346;91347;91348;91349;91350;91351;91352 55829;55830;55831;55832;55833;55834;55835;55836;55837;55838;55839;55840;55841;55842;55843;55844 55837 16 EKVINQLTGGLAGMAK Unmodified 1628.892 0.89197646 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1 2 2 1 1 2 2 2 32.997 31.602 2;3 1.1933E-30 11859 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 292.57 259.34 1662600000 0 4669600 6139100 421540000 387750000 431170000 0 0 0 9228000 9658500 9072000 0 0 0 14443000 13164000 11791000 0 0 0 123780000 110460000 109720000 4865 542 4741 91353;91354;91355;91356;91357;91358;91359;91360;91361;91362;91363;91364;91365;91366;91367;91368;91369;91370;91371;91372;91373;91374 55845;55846;55847;55848;55849;55850;55851;55852;55853;55854;55855;55856;55857;55858;55859;55860;55861;55862;55863 55856 19 EKVINQLTGGLAGMAK Oxidation (M) 1644.8869 0.88689108 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 2 2 30.576 28.997 2;3 1.1291E-06 10883 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 107.17 65.165 41632000 0 0 0 6833500 11188000 4842600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6604900 5632300 6531400 4866 542 4741 91375;91376;91377;91378;91379;91380;91381;91382;91383;91384 55864;55865;55866;55867;55868;55869 55868 325 6 ELAAATSSADEGASVAYK Unmodified 1739.8214 0.82137352 1391 P32162 yiiS UPF0381 protein YiiS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.055 22.342 2 4.8202E-55 9766 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 271.6 262.16 503840000 49684000 47509000 43255000 1373300 0 0 91760000 76867000 77331000 0 3723700 4729100 19911000 16417000 16804000 0 0 0 14509000 23699000 16263000 0 0 0 4867 1391 4742 91385;91386;91387;91388;91389;91390;91391;91392;91393;91394;91395;91396;91397;91398;91399 55870;55871;55872;55873;55874;55875;55876;55877;55878;55879;55880;55881 55873 12 ELAAFSQFASDLDDATR Unmodified 1855.8588 0.85882166 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 52.185 50.969 2;3 1.199E-49 25039 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 329.18 323.33 4646800000 132820000 139330000 126170000 33175000 27003000 27900000 357150000 357670000 324950000 98568000 83185000 91543000 423330000 408260000 390140000 32151000 19816000 23307000 415780000 452850000 417990000 89722000 84277000 89697000 4868 645 4743 91400;91401;91402;91403;91404;91405;91406;91407;91408;91409;91410;91411;91412;91413;91414;91415;91416;91417;91418;91419;91420;91421;91422;91423;91424;91425;91426;91427;91428;91429;91430;91431;91432;91433;91434;91435;91436;91437;91438;91439;91440;91441;91442;91443;91444 55882;55883;55884;55885;55886;55887;55888;55889;55890;55891;55892;55893;55894;55895;55896;55897;55898;55899;55900;55901;55902;55903;55904;55905;55906;55907;55908;55909;55910;55911;55912;55913;55914;55915;55916;55917;55918;55919;55920;55921;55922;55923;55924 55914 43 ELAAFSQFASDLDDATRK Unmodified 1983.9538 0.95378467 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 46.073 44.596 2;3 1.4411E-55 22098 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 288.71 285.94 1961200000 37977000 40793000 39296000 32329000 31862000 26888000 101170000 84369000 89499000 126980000 108050000 96934000 103030000 117860000 109680000 45336000 39472000 43843000 119440000 141970000 133490000 96437000 102010000 92467000 4869 645 4744 91445;91446;91447;91448;91449;91450;91451;91452;91453;91454;91455;91456;91457;91458;91459;91460;91461;91462;91463;91464;91465;91466;91467;91468;91469;91470;91471;91472;91473;91474;91475;91476;91477;91478;91479;91480;91481;91482;91483;91484;91485;91486;91487;91488 55925;55926;55927;55928;55929;55930;55931;55932;55933;55934;55935;55936;55937;55938;55939;55940;55941;55942;55943;55944;55945;55946;55947;55948;55949;55950;55951;55952;55953;55954;55955;55956 55938 32 ELAAGLPTAISLASTDQTFADDLQQLLHCGK Unmodified 3283.6395 0.63945675 276 P0A6S7 gpsA Glycerol-3-phosphate dehydrogenase [NAD(P)+] yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.464 54.003 3 1.0076E-17 26600 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.45 140.37 419990000 52996000 45715000 53075000 0 0 0 0 22571000 21834000 0 0 0 32920000 36589000 32967000 0 0 0 39589000 44515000 37214000 0 0 0 4870 276 4745 91489;91490;91491;91492;91493;91494;91495;91496;91497;91498;91499 55957 55957 1 ELAALALK Unmodified 827.51165 0.5116541 1127 P16687 phnI Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 29.985 28.479 2 0.012865 13269 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 74.415 28.045 50104000 0 0 0 0 0 0 0 2208800 2186400 388320 0 0 4412600 2603200 4047700 0 0 0 10017000 13256000 10985000 0 0 0 4871 1127 4746 91500;91501;91502;91503;91504;91505;91506;91507;91508 55958;55959;55960;55961;55962 55959 5 ELAASGVMLTSDENVVR Unmodified 1789.888 0.88801329 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 1 1 2 2 1 2 37.535 35.597 2;3 7.6544E-50 16625 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 280.21 271.69 372550000 0 0 0 7662300 17256000 9658600 0 0 0 28776000 27836000 25358000 29985000 27219000 0 0 0 0 43295000 42523000 49602000 20460000 18802000 24114000 4872 649 4747 91509;91510;91511;91512;91513;91514;91515;91516;91517;91518;91519;91520;91521;91522;91523;91524;91525;91526;91527;91528;91529;91530;91531;91532 55963;55964;55965;55966;55967;55968;55969;55970;55971;55972;55973;55974;55975 55974 13 ELADAFELDIHDFSVSEVNR Unmodified 2305.0863 0.08625541 1682 P64519 yodD Uncharacterized protein YodD yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.08 50.833 3 3.0493E-10 24853 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.91 105.87 160240000 24269000 24564000 22692000 0 0 0 18545000 19182000 19833000 0 0 0 6280400 4250400 5256700 0 0 0 6078300 4800400 4485100 0 0 0 4873 1682 4748 91533;91534;91535;91536;91537;91538;91539;91540;91541;91542;91543;91544 55976;55977;55978;55979;55980;55981 55980 4 ELADQLVPYAK Unmodified 1245.6605 0.66050319 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 35.288 33.813 2 0.1376 16475 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 37.344 23.046 29421000 3172500 0 0 0 0 0 0 12209000 0 0 0 0 3843100 3209100 3704200 0 0 0 3283400 0 0 0 0 0 4874 169 4749 91545;91546;91547;91548;91549;91550 55982 55982 1 ELAEHNGAEGDLEADYQAASDHLNLVQTALR Unmodified 3349.5811 0.58109025 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 46.402 44.873 4 0.15903 21951 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 15.206 13.215 257120000 24831000 34636000 0 2747000 0 0 33288000 31346000 23609000 0 0 0 0 0 20791000 0 0 0 0 49898000 35978000 0 0 0 4875 1197 4750 91551;91552;91553;91554;91555;91556;91557;91558;91559 55983 55983 1 ELAENNPLGDYLR Unmodified 1502.7365 0.73652168 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.856 40.153 2 9.1739E-14 19934 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 202.56 195.43 611820000 51695000 62691000 62482000 0 682350 707230 44896000 44950000 43727000 0 0 0 49343000 41082000 37886000 0 0 0 57207000 56864000 57611000 0 0 0 4876 1085 4751 91560;91561;91562;91563;91564;91565;91566;91567;91568;91569;91570;91571;91572;91573 55984;55985;55986 55985 3 ELAESEGAIER Unmodified 1202.5779 0.57789577 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.93 17.637 2 1.1752E-07 5977 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 200.6 127.36 12505000000 703480000 703710000 631120000 2198900 0 0 1323800000 1385300000 1372500000 0 0 683890 989690000 871440000 893130000 0 0 0 1229100000 1233100000 1165600000 0 0 0 4877 402 4752 91574;91575;91576;91577;91578;91579;91580;91581;91582;91583;91584;91585;91586;91587 55987;55988;55989;55990;55991;55992;55993;55994;55995;55996;55997;55998;55999 55997 12 ELAETNITQVIVTHEVEVAR Unmodified 2250.1856 0.18557552 591 P0AAF6 artP Arginine transport ATP-binding protein ArtP yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.563 41.801 3 3.0853E-10 14753 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 118.72 109.54 247070000 26915000 30548000 24788000 5264400 4709400 5136900 20307000 14646000 16245000 4160100 5400400 4663600 12402000 10402000 0 0 0 0 17817000 18212000 14509000 3726000 4493400 2722300 4878 591 4753 91588;91589;91590;91591;91592;91593;91594;91595;91596;91597;91598;91599;91600;91601;91602;91603;91604;91605;91606;91607 56000;56001;56002 56002 3 ELAEVVAAATPVK Unmodified 1296.7289 0.7289171 1619 P60390 rsmH Ribosomal RNA small subunit methyltransferase H yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.527 33.079 2 5.387E-08 15743 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.64 145.47 215990000 23073000 27559000 24987000 0 0 0 15504000 15314000 15092000 0 0 0 15835000 15443000 16062000 0 0 0 15560000 16250000 15310000 0 0 0 4879 1619 4754 91608;91609;91610;91611;91612;91613;91614;91615;91616;91617;91618;91619 56003;56004;56005;56006;56007 56004 4 ELAGVAGCAVAIAPPEMYIDMAK Unmodified 2376.1528 0.15276053 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 2 2 2 2 53.906 52.458 2;3 1.2362E-43 25551 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 233.4 233.02 5961400000 631940000 572080000 567420000 0 0 0 565480000 516810000 478080000 0 0 0 490340000 463160000 471950000 0 0 0 403090000 432130000 368970000 0 0 0 4880 399 4755 91620;91621;91622;91623;91624;91625;91626;91627;91628;91629;91630;91631;91632;91633;91634;91635;91636;91637;91638;91639;91640;91641;91642;91643;91644 56008;56009;56010;56011;56012;56013;56014;56015;56016;56017;56018;56019;56020;56021;56022;56023;56024;56025;56026;56027;56028;56029;56030;56031 56019 24 ELAGVER Unmodified 772.40792 0.40791731 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.174 13.011 2 0.091554 3718 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 55.441 9.09 234510000 17244000 0 21982000 0 0 0 34751000 31003000 28514000 0 0 0 23508000 22128000 20334000 0 0 0 0 0 35045000 0 0 0 4881 1937 4756 91645;91646;91647;91648;91649;91650;91651;91652;91653 56032 56032 1 ELAGVSEVSFTEFAAEK Unmodified 1812.8782 0.87816011 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.894 45.321 2 3.35E-24 17883 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 210.41 194.87 157250000 7765300 6142600 7096100 0 0 0 9490900 7506000 6763600 1269900 0 1402000 10468000 0 9728700 0 0 0 13531000 12637000 8722200 17401000 19902000 17427000 4882 1433 4757 91654;91655;91656;91657;91658;91659;91660;91661;91662;91663;91664;91665;91666;91667;91668;91669 56033;56034;56035;56036;56037;56038;56039;56040 56033 8 ELAGWMCDVLDSINDEAVIER Unmodified 2434.1145 0.11446077 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 2 2 55.617 54.168 2;3 1.5583E-102 25906 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 354.04 351.41 6305800000 1129800000 1034600000 920260000 2965100 4712800 4154300 308070000 245570000 271950000 1335400 2503800 0 378090000 319140000 371900000 0 0 0 442150000 438970000 429670000 0 0 0 4883 391 4758 91670;91671;91672;91673;91674;91675;91676;91677;91678;91679;91680;91681;91682;91683;91684;91685;91686;91687;91688;91689;91690;91691;91692;91693;91694;91695;91696;91697;91698;91699;91700 56041;56042;56043;56044;56045;56046;56047;56048;56049;56050;56051;56052;56053;56054;56055;56056;56057;56058;56059;56060;56061;56062;56063;56064 56059 24 ELAIEFSR Unmodified 963.50255 0.50254598 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.251 30.911 2 0.00020659 13953 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 152.47 109.47 337780000 13594000 16876000 11708000 0 0 0 29589000 31064000 32008000 0 0 0 33391000 29371000 33461000 0 0 0 37442000 36167000 33113000 0 0 0 4884 509 4759 91701;91702;91703;91704;91705;91706;91707;91708;91709;91710;91711;91712 56065;56066;56067;56068 56067 4 ELALLEGMEISGK Unmodified 1388.7221 0.72211717 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.485 47.246 2 6.4339E-06 19225 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 125.74 99.226 419480000 0 0 0 5186800 4553100 5739200 37822000 32855000 32802000 37477000 25708000 28634000 27561000 22714000 27759000 5458900 5192800 5161400 28349000 26940000 27953000 10115000 11144000 10352000 4885 1944 4760 91713;91714;91715;91716;91717;91718;91719;91720;91721;91722;91723;91724;91725;91726;91727;91728;91729;91730;91731;91732;91733 56069;56070;56071;56072;56073;56074;56075;56076;56077;56078;56079;56080;56081;56082;56083;56084;56085;56086;56087;56088;56089;56090;56091 56071 18 ELALQIGVK Unmodified 969.58588 0.58588168 1562 P43337 nudL Uncharacterized Nudix hydrolase NudL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.068 26.896 2 0.041739 12333 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 56.547 30.81 1134800000 52560000 46161000 42459000 0 0 0 273760000 257130000 216920000 0 0 0 42025000 43514000 42260000 0 0 0 44071000 39046000 34898000 0 0 0 4886 1562 4761 91734;91735;91736;91737;91738;91739;91740;91741;91742;91743;91744;91745 56092;56093;56094;56095;56096;56097;56098;56099;56100;56101;56102;56103 56098 12 ELALQSGLAHK Unmodified 1165.6455 0.64552182 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 3 2 2 1 1 2 3 2 2 2 2 1 1 1 18.951 19.384 2;3 2.3751E-10 6900 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 190.73 153.57 11367000000 921470000 907330000 703600000 2644700 2393000 2446300 1149200000 1192600000 1273800000 4991100 2742800 2658800 915310000 833940000 774520000 0 0 0 976330000 852010000 844600000 1873000 1102900 946330 4887 771 4762 91746;91747;91748;91749;91750;91751;91752;91753;91754;91755;91756;91757;91758;91759;91760;91761;91762;91763;91764;91765;91766;91767;91768;91769;91770;91771;91772;91773;91774;91775;91776;91777;91778;91779;91780;91781;91782;91783;91784 56104;56105;56106;56107;56108;56109;56110;56111;56112;56113;56114;56115;56116;56117;56118;56119;56120;56121;56122;56123;56124;56125;56126;56127;56128;56129 56126 25 ELANAIR Unmodified 785.43955 0.43955179 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.454 15.271 2 0.0013448 5052 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.65 79.423 4615900000 196250000 192170000 171170000 8656400 1335700 1389500 492850000 545230000 522570000 0 0 0 441240000 357400000 346140000 0 0 0 453030000 431330000 455110000 0 0 0 4888 1299 4763 91785;91786;91787;91788;91789;91790;91791;91792;91793;91794;91795;91796;91797;91798;91799 56130;56131;56132;56133;56134;56135;56136;56137;56138 56132 3 ELANVQDLTVR Unmodified 1256.6725 0.67246486 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 2 2 2 1 2 31.351 30.005 2;3 2.0459E-10 13969 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 232.83 189.03 7860600000 757780000 650370000 612170000 0 0 0 647430000 605660000 657040000 0 0 0 608960000 630610000 625980000 0 0 0 708200000 700550000 655820000 0 0 0 4889 72 4764 91800;91801;91802;91803;91804;91805;91806;91807;91808;91809;91810;91811;91812;91813;91814;91815;91816;91817 56139;56140;56141;56142;56143;56144;56145;56146;56147;56148;56149;56150;56151 56144 13 ELAPPEQFR Unmodified 1085.5506 0.55055881 1483 P37661 eptB Phosphoethanolamine transferase EptB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 25.713 24.61 2 0.0012335 10940 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.77 56.278 31771000 4622500 5061800 4499000 0 0 0 0 4692000 6105100 0 0 0 0 0 0 0 0 0 0 0 6790800 0 0 0 4890 1483 4765 91818;91819;91820;91821;91822;91823 56152 56152 1 ELAQIDQHIADGELNLWQASSDK Unmodified 2580.2456 0.2456096 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.291 44.795 3 1.1805E-22 22180 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 177.71 174.95 520250000 103160000 109250000 87319000 1160100 984530 0 43543000 32723000 41464000 0 0 0 19013000 15992000 17127000 0 0 0 16016000 17858000 14641000 0 0 0 4891 1958 4766 91824;91825;91826;91827;91828;91829;91830;91831;91832;91833;91834;91835;91836;91837 56153;56154;56155;56156;56157;56158;56159;56160;56161 56154 9 ELASEVGSLLTYEATADLETEK Unmodified 2368.1533 0.15333192 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 3 3 2 2 2 2 2 3 3 2 54.676 53.209 2;3 6.9853E-63 26055 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 352.62 349.99 2478300000 259950000 186360000 204400000 1943400 0 0 104250000 101910000 94902000 0 5556700 0 252520000 270390000 234530000 0 0 0 273510000 261950000 226090000 0 0 0 4892 424 4767 91838;91839;91840;91841;91842;91843;91844;91845;91846;91847;91848;91849;91850;91851;91852;91853;91854;91855;91856;91857;91858;91859;91860;91861;91862;91863;91864;91865;91866;91867 56162;56163;56164;56165;56166;56167;56168;56169;56170;56171;56172;56173;56174;56175;56176;56177;56178;56179;56180;56181;56182;56183 56169 17 ELASGELIDLTPGLFQR Unmodified 1857.9836 0.98362824 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 53.925 53.981 3 1.1433E-05 20279 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 87.647 77.451 51685000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13298000 21718000 16669000 0 0 0 0 0 0 4893 456 4768 91868;91869;91870 56184 56184 1 ELASGLAEVIK Unmodified 1128.639 0.63903946 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 36.718 35.32 2 7.9009E-05 17037 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 123.86 73.827 579490000 61633000 59601000 52619000 0 0 0 48744000 52168000 54537000 0 0 0 39217000 0 42686000 0 1610500 1741900 57978000 54177000 52779000 0 0 0 4894 164 4769 91871;91872;91873;91874;91875;91876;91877;91878;91879;91880;91881;91882;91883 56185;56186;56187;56188;56189;56190;56191 56185 7 ELASGLSCPVGFK Unmodified 1363.6806 0.6805867 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 33.862 32.677 2 5.855E-07 15703 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 174.41 164.41 1254400000 326220000 0 319200000 0 0 0 113070000 106140000 89518000 0 0 0 103040000 91551000 95280000 4446500 0 5890700 0 0 0 0 0 0 4895 639 4770 91884;91885;91886;91887;91888;91889;91890;91891;91892;91893 56192;56193;56194;56195;56196;56197 56195 6 ELATCTPEYYR Unmodified 1401.6235 0.62346575 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.01 23.039 2 1.0664E-26 10200 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 262.83 239.41 2300500000 227290000 188670000 165490000 1079400 1244600 1235100 189890000 189990000 179680000 1245700 0 0 166220000 148880000 153060000 0 0 0 210650000 232170000 239520000 1389600 1488900 1294900 4896 170 4771 91894;91895;91896;91897;91898;91899;91900;91901;91902;91903;91904;91905;91906;91907;91908;91909;91910;91911;91912 56198;56199;56200;56201;56202;56203;56204;56205;56206;56207;56208;56209 56200 12 ELAVEVGK Unmodified 843.47018 0.47018322 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.927 19.411 2 0.0028521 7583 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 97.033 61.4 572560000 124120000 132960000 92791000 6547000 5769000 5676700 19045000 18785000 16006000 0 0 0 26770000 23564000 19072000 0 0 0 30728000 21390000 23217000 2085700 2156200 1868100 4897 529 4772 91913;91914;91915;91916;91917;91918;91919;91920;91921;91922;91923;91924;91925;91926;91927;91928;91929;91930 56210;56211;56212;56213;56214;56215;56216;56217 56211 8 ELAVQIHADAEPLAEATGLK Unmodified 2075.0899 0.089884225 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 40.409 38.752 3 3.4996E-05 18715 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 82.36 79.022 228420000 23536000 22229000 20014000 4690800 4721800 3985300 19971000 0 17270000 0 0 0 13943000 0 11409000 0 0 0 30941000 27570000 28135000 0 0 0 4898 438 4773 91931;91932;91933;91934;91935;91936;91937;91938;91939;91940;91941;91942;91943 56218;56219;56220;56221;56222;56223;56224;56225;56226;56227 56226 10 ELAYLSADDLR Unmodified 1264.6299 0.62993134 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.27 35.477 2 1.6652E-05 13903 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 139.98 135.01 325780000 25471000 28641000 23170000 927250 1272300 1401800 0 0 0 7852100 7381800 7495500 26723000 28656000 26041000 0 0 0 41874000 50780000 42928000 5161400 0 0 4899 1197 4774 91944;91945;91946;91947;91948;91949;91950;91951;91952;91953;91954;91955;91956;91957;91958;91959 56228;56229;56230;56231;56232;56233;56234;56235;56236;56237;56238 56229 3 ELCQNHNIPVELIQCR Unmodified 2021.9775 0.97751378 1461 P37188 gatB Galactitol-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 32.549 31.087 2;3 1.097E-74 14869 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 383.14 380.5 16715000000 1567700000 1569900000 1393300000 20703000 16930000 15672000 2083700000 1960000000 1991900000 27515000 34453000 28122000 1130600000 1088100000 1035400000 10070000 8863900 13468000 883810000 884720000 932350000 5688300 5974500 6346100 4900 1461 4775 91960;91961;91962;91963;91964;91965;91966;91967;91968;91969;91970;91971;91972;91973;91974;91975;91976;91977;91978;91979;91980;91981;91982;91983;91984;91985;91986;91987;91988;91989;91990;91991;91992;91993;91994;91995;91996;91997;91998;91999;92000 56239;56240;56241;56242;56243;56244;56245;56246;56247;56248;56249;56250;56251;56252;56253;56254;56255;56256;56257;56258;56259;56260;56261;56262;56263;56264;56265;56266;56267;56268;56269;56270;56271;56272;56273;56274 56251 36 ELDAETAQAIISR Unmodified 1415.7256 0.72562264 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 2 2 1 1 1 1 1 36.096 34.514 2;3 2.5582E-12 16521 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.28 159.55 1048500000 337870000 352220000 268870000 1369000 1350500 1293700 18641000 19306000 19559000 0 0 0 4900000 0 3854600 0 0 0 5430800 7046100 6757300 0 0 0 4901 1111 4776 92001;92002;92003;92004;92005;92006;92007;92008;92009;92010;92011;92012;92013;92014;92015;92016;92017;92018;92019 56275;56276;56277;56278;56279 56278 4 ELDALAK Unmodified 758.41742 0.41741937 1902 P77376 ydgJ Uncharacterized oxidoreductase YdgJ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.99 14.241 2 0.1313 4355 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 48.174 10.528 452480000 145370000 121690000 115420000 0 0 0 0 0 0 1021400 641780 928820 0 0 0 20664000 20124000 19590000 0 0 0 1909800 3001200 2125000 4902 1902 4777 92020;92021;92022;92023;92024;92025;92026;92027;92028;92029;92030;92031 56280 56280 1 ELDAQPTGFLDSR Unmodified 1447.6943 0.69432251 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.725 34.093 2 2.3449E-17 16721 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 208.33 203.02 831580000 86549000 85003000 77664000 0 1844200 1551900 62771000 60564000 60514000 0 1043000 0 44980000 51315000 50607000 0 0 0 90362000 81358000 75455000 0 0 0 4903 1348 4778 92032;92033;92034;92035;92036;92037;92038;92039;92040;92041;92042;92043;92044;92045;92046 56281;56282;56283;56284;56285;56286;56287;56288;56289;56290;56291;56292 56281 12 ELDDDTLASYQK Unmodified 1396.6358 0.63580458 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.654 25.518 2 7.3848E-07 11392 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.05 146.11 786700000 151290000 127590000 134120000 820930 0 0 59239000 55411000 52381000 0 0 0 32371000 31772000 31657000 0 0 0 38768000 37758000 33516000 0 0 0 4904 218 4779 92047;92048;92049;92050;92051;92052;92053;92054;92055;92056;92057;92058;92059 56293;56294;56295;56296;56297;56298;56299;56300;56301;56302;56303;56304 56301 12 ELDGFTAK Unmodified 879.4338 0.43379771 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.988 20.454 2 0.0019749 7912 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.37 46.902 652810000 117490000 97080000 96074000 0 0 0 54405000 51622000 56719000 0 0 0 29716000 23495000 21576000 0 0 0 33089000 35799000 35743000 0 0 0 4905 218 4780 92060;92061;92062;92063;92064;92065;92066;92067;92068;92069;92070;92071 56305;56306;56307;56308;56309;56310;56311;56312 56308 6 ELDGLSYEEIAAIMDCPVGTVR Unmodified 2437.1505 0.15051193 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 55.184 55.239 2;3 4.9394E-35 20711 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 301.45 289.83 803160000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 277740000 233860000 291560000 0 0 0 0 0 0 4906 1005 4781 92072;92073;92074;92075;92076;92077 56313;56314;56315;56316;56317;56318 56316 6 ELDISIMPFFEHEYDSLSDDEKR Unmodified 2814.2694 0.26944109 1686 P64559 cptB Antitoxin CptB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.151 52.699 4 4.1969E-22 24788 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 170.91 168.5 1153500000 84545000 96220000 80079000 0 0 0 105950000 78647000 71382000 1893800 0 0 103260000 96714000 94767000 0 0 0 135010000 106050000 98988000 0 0 0 4907 1686 4782 92078;92079;92080;92081;92082;92083;92084;92085;92086;92087;92088;92089;92090 56319;56320;56321;56322;56323;56324;56325;56326;56327;56328;56329 56329 11 ELDLIIPR Unmodified 967.57023 0.57023162 1135 P17115 gutQ Arabinose 5-phosphate isomerase GutQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 41.97 40.418 2 0.00011523 20174 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 158.12 145.76 356620000 28224000 22483000 22696000 0 0 0 38894000 35189000 30162000 0 0 0 25021000 26333000 25244000 0 0 4145900 33556000 31126000 33541000 0 0 0 4908 1135 4783 92091;92092;92093;92094;92095;92096;92097;92098;92099;92100;92101;92102;92103 56330;56331;56332;56333;56334;56335;56336;56337;56338;56339;56340;56341 56330 12 ELDPMIK Unmodified 844.43644 0.43644025 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.073 23.112 2 0.022407 8162 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 74.717 47.4 11178000000 491970000 449630000 390440000 2203100 2072000 2346000 1354100000 1347900000 1396100000 5235500 5085800 5569100 1146600000 1088700000 1050900000 2262300 0 0 821780000 811600000 796090000 3515500 3743800 0 4909 212 4784 92104;92105;92106;92107;92108;92109;92110;92111;92112;92113;92114;92115;92116;92117;92118;92119;92120;92121;92122;92123;92124;92125 56342;56343;56344;56345;56346;56347;56348;56349;56350;56351;56352;56353;56354;56355;56356;56357;56358 56344 16 ELDPMIK Oxidation (M) 860.43135 0.43135487 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By MS/MS By matching By MS/MS 1 1 1 18.613 19.318 2 0.13692 6903 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 44.531 18.973 43137000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5386300 0 0 0 34900000 0 2850600 0 0 0 4910 212 4784 92126;92127;92128 56359;56360 56360 0 ELDQALVVR Unmodified 1041.5819 0.58185893 519 P0A9H1 mug G/U mismatch-specific DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 2 1 2 2 2 2 27.801 26.522 2 0.000538 12544 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.67 89.349 448340000 57026000 56322000 56460000 847800 1040100 744370 48875000 49033000 30667000 0 3785300 3543800 16072000 14348000 12662000 0 0 0 34994000 32544000 29371000 0 0 0 4911 519 4785 92129;92130;92131;92132;92133;92134;92135;92136;92137;92138;92139;92140;92141;92142;92143;92144;92145;92146;92147;92148;92149;92150;92151;92152;92153 56361;56362;56363;56364;56365;56366;56367;56368;56369;56370;56371;56372 56361 12 ELDREFGELKEETCR Unmodified 1909.884 0.88399055 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.202 23.294 3 2.1949E-15 10148 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 193.32 177.44 691480000 61281000 60985000 65188000 1053900 775520 1299500 93270000 99523000 83593000 0 0 0 31015000 38926000 32141000 0 0 0 40427000 43176000 38825000 0 0 0 4912 468 4786 92154;92155;92156;92157;92158;92159;92160;92161;92162;92163;92164;92165;92166;92167;92168 56373;56374;56375;56376;56377;56378;56379;56380;56381;56382;56383 56379 11 ELDVLHELAQGLSNK Unmodified 1664.8733 0.87334951 1380 P31802 narP Nitrate/nitrite response regulator protein NarP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 49.159 47.75 2;3 2.2328E-45 19091 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 295.34 281.53 894060000 76436000 72642000 62004000 5228100 4515600 3844200 77761000 85682000 74115000 26511000 26065000 26103000 43708000 42070000 61627000 0 0 0 59800000 61204000 64608000 6255300 7071200 6808800 4913 1380 4787 92169;92170;92171;92172;92173;92174;92175;92176;92177;92178;92179;92180;92181;92182;92183;92184;92185;92186;92187;92188;92189;92190;92191;92192;92193;92194;92195;92196;92197;92198;92199;92200;92201;92202;92203;92204;92205;92206;92207 56384;56385;56386;56387;56388;56389;56390;56391;56392;56393;56394;56395;56396;56397;56398;56399;56400;56401;56402;56403;56404;56405;56406;56407;56408;56409;56410 56389 27 ELEAAMR Unmodified 818.39564 0.39563807 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.502 15.267 1 2.8467E-27 5034 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 279.52 69.154 144540000 20284000 18885000 17923000 0 0 0 8780600 7291500 8193300 0 0 0 8388000 8113400 7233700 0 0 0 12048000 12284000 15118000 0 0 0 4914 228 4788 92208;92209;92210;92211;92212;92213;92214;92215;92216;92217;92218;92219 56411;56412;56413;56414;56415 56414 5 ELEAAMR Oxidation (M) 834.39055 0.39055269 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.23 12.074 2 0.097088 3098 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.246 7.7069 98135000 10013000 9815200 8898500 0 0 0 0 13818000 9624500 0 0 0 7715300 6109900 5470800 0 0 0 10743000 7695500 8230500 0 0 0 4915 228 4788 92220;92221;92222;92223;92224;92225;92226;92227;92228;92229;92230 56416;56417;56418;56419 56418 2 ELEANGK Unmodified 759.37628 0.37628284 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 3 3 2 1 1 1 1 1 3 2 1 1 1 3 1 1 1 1 1 8.308 8.9639 2 0.0050338 1882 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.33 93.916 8239300000 136220000 118200000 90149000 0 0 0 15918000 17881000 22575000 495720000 379560000 456950000 6204600 21974000 23269000 1469400000 1474400000 1479300000 33950000 12282000 10956000 736470000 634670000 603200000 4916 458 4789 92231;92232;92233;92234;92235;92236;92237;92238;92239;92240;92241;92242;92243;92244;92245;92246;92247;92248;92249;92250;92251;92252;92253;92254;92255;92256;92257;92258;92259;92260;92261;92262;92263;92264;92265;92266;92267 56420;56421;56422;56423;56424;56425;56426;56427;56428;56429;56430;56431;56432;56433;56434;56435;56436;56437;56438;56439;56440 56432 21 ELEATEK Unmodified 818.40216 0.40216323 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 11.086 11.939 2 0.063076 2847 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 60.648 47.66 111010000 5086500 0 0 0 0 0 0 12333000 23545000 0 0 0 16144000 21969000 0 0 0 0 6778300 6865300 18283000 0 0 0 4917 1197 4790 92268;92269;92270;92271;92272;92273;92274;92275 56441;56442 56442 2 ELEETIRPYDMGITLLDVNFQAARPPEEVK Unmodified 3472.7548 0.75482086 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 52.683 51.452 3;4 1.0431E-31 20943 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 194.59 190.3 908220000 27554000 35678000 28830000 9261200 10343000 10359000 76774000 67925000 54445000 33531000 39277000 37928000 63160000 58089000 53310000 6631500 6947600 7747100 76953000 73686000 89965000 11785000 11358000 16684000 4918 649 4791 92276;92277;92278;92279;92280;92281;92282;92283;92284;92285;92286;92287;92288;92289;92290;92291;92292;92293;92294;92295;92296;92297;92298;92299;92300;92301;92302;92303;92304;92305;92306;92307;92308;92309;92310;92311;92312;92313 56443;56444;56445;56446;56447;56448;56449;56450;56451;56452;56453;56454;56455;56456;56457 56443 15 ELEGALNR Unmodified 900.46649 0.46649483 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.914 16.547 2 0.00083171 4683 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 121.29 70.986 166400000 13040000 15944000 11125000 2956700 2355500 2701900 0 0 8926300 14469000 14310000 8909500 6501400 8332300 6146900 0 0 0 14260000 10832000 11878000 5238300 4210400 4260100 4919 78 4792 92314;92315;92316;92317;92318;92319;92320;92321;92322;92323;92324;92325;92326;92327;92328;92329;92330;92331;92332 56458;56459;56460;56461;56462;56463;56464;56465 56459 5 ELEGHNVLTHLGPEPLSDDFNGEYLHQK Unmodified 3187.5211 0.52105618 112 P05523 mutM Formamidopyrimidine-DNA glycosylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 36.876 36.123 4;5 9.8593E-08 13075 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 102.27 102.27 68299000 0 0 0 0 0 0 3243800 14548000 5043300 0 0 0 0 0 0 15351000 11555000 12069000 0 6488100 0 0 0 0 4920 112 4793 92333;92334;92335;92336;92337;92338;92339;92340;92341;92342 56466;56467;56468;56469;56470;56471 56466 6 ELEIWAGR Unmodified 972.50288 0.50288033 892 P0AEW9 fruK 1-phosphofructokinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.472 32.95 2 0.00030221 15687 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.94 96.905 435740000 34354000 33627000 27499000 0 0 0 32343000 31288000 31316000 0 0 0 36339000 36271000 35250000 0 0 0 44878000 41547000 47579000 1166500 2286900 0 4921 892 4794 92343;92344;92345;92346;92347;92348;92349;92350;92351;92352;92353;92354;92355;92356 56472;56473;56474;56475;56476;56477;56478;56479;56480 56474 9 ELEKLENSLGGIK Unmodified 1428.7824 0.78240924 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 1 1 1 2 2 1 28.302 26.91 2;3 1.2389E-06 9115 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 152.04 131.34 202860000 0 0 0 5935000 3956100 7375500 0 0 0 29324000 31004000 32212000 0 0 0 15966000 9891200 15572000 2291100 0 0 19989000 20047000 9296700 4922 373 4795 92357;92358;92359;92360;92361;92362;92363;92364;92365;92366;92367;92368;92369;92370;92371;92372;92373;92374;92375;92376;92377 56481;56482;56483;56484;56485;56486;56487;56488;56489;56490;56491;56492 56482 12 ELEKPGR Unmodified 827.45012 0.45011648 1586 P46837 yhgF Protein YhgF yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 9.1673 9.9215 2 0.028717 2158 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 80.555 5.9583 8103400 0 0 0 0 0 0 2872700 2365700 2865000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4923 1586 4796 92378;92379;92380 56493;56494 56493 2 ELEMVVENGCYTLK Unmodified 1683.7848 0.78479378 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.674 37.98 2 4.3647E-08 18769 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 145.91 130.77 49657000 0 2556100 4647600 0 0 0 5380200 5951600 5803600 0 0 0 4260400 3545100 4261400 0 0 0 3419500 5662600 4169400 0 0 0 4924 880 4797 92381;92382;92383;92384;92385;92386;92387;92388;92389;92390;92391 56495 56495 1 ELENTIPGFTRPNHGYLESWAR Unmodified 2586.2615 0.26153443 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.523 36.849 4 0.003766 18354 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 51.31 39.114 332500000 26304000 23550000 25865000 0 0 0 36052000 34423000 27627000 0 0 0 21602000 18439000 19821000 0 0 0 38635000 34807000 25375000 0 0 0 4925 1078 4798 92392;92393;92394;92395;92396;92397;92398;92399;92400;92401;92402;92403 56496;56497;56498 56496 3 ELEPEWSMTMVER Unmodified 1635.7273 0.7272789 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.899 43.418 2 8.361E-13 21154 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 198.25 198.25 195600000 3630500 0 0 1773200 1853800 1903200 7521800 5761600 4395400 6399000 6307800 6073400 7655000 7261600 6657100 4148100 2162900 3167500 22998000 22452000 22844000 15925000 16991000 17720000 4926 1435 4799 92404;92405;92406;92407;92408;92409;92410;92411;92412;92413;92414;92415;92416;92417;92418;92419;92420;92421;92422;92423;92424;92425 56499;56500;56501;56502;56503;56504;56505;56506;56507;56508;56509;56510 56505 12 ELEPLSLVNCSSEFCHITPACR Unmodified 2618.1927 0.19272787 916 P0AF63 nsrR HTH-type transcriptional repressor NsrR yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.422 44.427 3 2.5089E-05 15770 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 86.625 84.012 57662000 9315100 0 8118600 0 0 0 0 3255900 0 0 0 0 0 4274500 5214600 7263200 5855900 3590400 2789600 4240900 3743900 0 0 0 4927 916 4800 92426;92427;92428;92429;92430;92431;92432;92433;92434;92435;92436 56511;56512;56513 56512 3 ELEQCLEDFYDQGK Unmodified 1772.7563 0.75633042 1833 P76215 astE Succinylglutamate desuccinylase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 43.064 41.725 2 4.1059E-06 20476 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.77 111.59 43597000 15131000 13550000 14917000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4928 1833 4801 92437;92438;92439 56514 56514 1 ELESGKYSDGDKHAFDQMLHSIGK Unmodified 2691.2599 0.25987945 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 1 1 1 1 1 30.353 28.839 4;5 0.00070649 11074 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 64.488 61.947 126280000 0 0 0 0 0 0 0 0 0 28430000 27982000 28343000 0 0 0 9915300 7433200 6704600 0 0 0 5198400 7194400 5080800 4929 30 4802 92440;92441;92442;92443;92444;92445;92446;92447;92448;92449;92450;92451;92452 56515;56516;56517;56518 56517 4 ELETKHPELITPDSPTQR Unmodified 2090.0644 0.064397756 1102 P15042 ligA DNA ligase yes yes 0 0 1 By MS/MS By matching 1 1 19.874 19.881 3 0.0046673 6031 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 50.178 44.968 8273300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6270600 0 2002700 0 0 0 0 0 0 4930 1102 4803 92453;92454 56519 56519 1 ELEVALLENR Unmodified 1184.6401 0.6401021 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.699 37.025 2 6.9419E-17 17144 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 230.09 214.43 306080000 36834000 30716000 32848000 0 0 0 24917000 18971000 24479000 0 0 0 17763000 18941000 17836000 0 0 0 29718000 28612000 24442000 0 0 0 4931 137 4804 92455;92456;92457;92458;92459;92460;92461;92462;92463;92464;92465;92466 56520;56521;56522;56523;56524;56525;56526;56527;56528;56529;56530;56531 56531 12 ELEVFVR Unmodified 890.48617 0.48616764 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.532 29.97 2 0.0023081 13433 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 114.59 99.566 2873000000 201880000 166280000 150160000 0 0 0 318270000 288240000 292740000 4600900 4179300 2786300 198770000 235060000 182030000 0 0 0 294280000 284570000 249160000 0 0 0 4932 445 4805 92467;92468;92469;92470;92471;92472;92473;92474;92475;92476;92477;92478;92479;92480;92481 56532;56533;56534;56535;56536;56537;56538;56539;56540;56541 56541 10 ELFAALNPPFEQQWAK Unmodified 1887.9519 0.95193418 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 53.246 51.801 2;3 1.3548E-13 25677 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 168.98 166.71 948930000 74838000 12625000 12702000 0 0 0 89279000 98400000 98377000 0 0 0 95762000 102260000 94226000 0 0 0 63310000 73761000 133390000 0 0 0 4933 1132 4806 92482;92483;92484;92485;92486;92487;92488;92489;92490;92491;92492;92493;92494;92495;92496;92497;92498;92499;92500;92501;92502;92503 56542;56543;56544;56545;56546;56547;56548;56549;56550;56551;56552 56543 11 ELFAGVPESR Unmodified 1103.5611 0.56112349 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.126 28.923 2 0.00048825 13377 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.802 92.235 266660000 19577000 17186000 15047000 0 0 0 17568000 19372000 14593000 0 3915600 3839800 10814000 12996000 9493500 33718000 22228000 29299000 12555000 13216000 11241000 0 0 0 4934 222 4807 92504;92505;92506;92507;92508;92509;92510;92511;92512;92513;92514;92515;92516;92517;92518;92519;92520 56553;56554;56555;56556;56557;56558;56559;56560;56561;56562;56563;56564;56565;56566;56567;56568;56569 56565 6 ELFALAK Unmodified 790.45889 0.45889025 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.663 30.321 1;2 0.02764 14698 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.432 37.319 783500000 42083000 48642000 37809000 0 0 0 118670000 111770000 115570000 0 0 0 51408000 50584000 47495000 0 0 0 51248000 58433000 49792000 0 0 0 4935 1588 4808 92521;92522;92523;92524;92525;92526;92527;92528;92529;92530;92531;92532;92533;92534;92535;92536;92537;92538;92539;92540;92541;92542;92543;92544 56570;56571;56572;56573;56574;56575;56576;56577;56578;56579;56580;56581;56582;56583;56584 56570 12 ELFDLCAR Unmodified 1022.4855 0.48551571 1060 P10443 dnaE DNA polymerase III subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.204 35.377 2 0.15714 16497 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 47.849 44.456 50491000 3769900 3648600 4940600 0 0 0 0 3998800 3555700 1321200 1985400 1727900 3359000 2850600 2344700 0 0 0 5565200 5877900 5045100 0 0 500160 4936 1060 4809 92545;92546;92547;92548;92549;92550;92551;92552;92553;92554;92555;92556;92557;92558;92559 56585 56585 0 ELFDLIK Unmodified 876.49567 0.49566969 1624 P60595 hisH Imidazole glycerol phosphate synthase subunit HisH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.275 43.86 2 0.0028071 21339 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.61 76.873 168780000 17722000 17260000 15943000 0 0 0 17743000 13006000 12872000 0 0 0 9374100 7406500 7408700 0 0 0 17751000 18005000 14288000 0 0 0 4937 1624 4810 92560;92561;92562;92563;92564;92565;92566;92567;92568;92569;92570;92571 56586;56587;56588;56589;56590;56591;56592;56593;56594;56595;56596;56597 56590 12 ELFEEQAK Unmodified 992.48148 0.48147619 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 2 2 19.014 19.354 1;2 0.00075894 7504 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.37 108.93 11174000000 750620000 715810000 579410000 13113000 12522000 13663000 939470000 945380000 861720000 31659000 25501000 27736000 889620000 869670000 750760000 10838000 8691900 10633000 1255400000 1202800000 1209200000 15713000 16462000 17101000 4938 396 4811 92572;92573;92574;92575;92576;92577;92578;92579;92580;92581;92582;92583;92584;92585;92586;92587;92588;92589;92590;92591;92592;92593;92594;92595;92596;92597;92598;92599;92600;92601;92602;92603;92604;92605;92606;92607;92608;92609;92610;92611;92612;92613;92614;92615;92616 56598;56599;56600;56601;56602;56603;56604;56605;56606;56607;56608;56609;56610;56611;56612;56613;56614;56615;56616;56617 56603 19 ELFEEQAKR Unmodified 1148.5826 0.58258722 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS 1 13.852 14.757 2 0.039909 4729 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.59 34.853 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4939 396 4812 92617 56618 56618 1 ELFIVPVWR Unmodified 1157.6597 0.65971533 601 P0AAM1 hyaC Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 53.916 52.354 2 0.00030784 25852 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 117.17 102.5 18333000 0 0 0 0 0 0 5927300 5186100 6023100 0 0 1196600 0 0 0 0 0 0 0 0 0 0 0 0 4940 601 4813 92618;92619;92620;92621 56619 56619 1 ELFKDEVR Unmodified 1034.5397 0.53965977 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.822 17.579 2 0.0064725 6256 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 89.55 68.022 785320000 68452000 66849000 67325000 0 0 0 53780000 56148000 58949000 0 0 0 69054000 58396000 57818000 0 0 0 76746000 75260000 76542000 0 0 0 4941 86 4814 92622;92623;92624;92625;92626;92627;92628;92629;92630;92631;92632;92633 56620;56621;56622;56623;56624;56625;56626;56627;56628 56627 9 ELFPEVR Unmodified 888.47052 0.47051757 1971 Q47083 cbl HTH-type transcriptional regulator cbl yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 31.307 29.674 2 0.024068 14015 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.039 49.067 53391000 5583400 0 4217600 0 0 0 4762400 4340200 4533200 1403400 1147000 1337600 3280500 5047600 0 0 0 0 6107900 5389100 6240800 0 0 0 4942 1971 4815 92634;92635;92636;92637;92638;92639;92640;92641;92642;92643;92644;92645;92646 56629 56629 1 ELFSALR Unmodified 834.45995 0.45995289 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 31.934 30.574 2 0.0006586 14262 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 148.28 60.7 484060000 4517700 0 4711500 0 0 0 69054000 68813000 57882000 0 0 0 42249000 41246000 43056000 0 0 0 49491000 51365000 51678000 0 0 0 4943 785 4816 92647;92648;92649;92650;92651;92652;92653;92654;92655;92656;92657 56630;56631;56632;56633;56634;56635;56636;56637 56634 8 ELGASDEADLQR Unmodified 1302.6052 0.60517315 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 19.314 19.696 2 1.1497E-06 7548 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 150.35 135.41 161420000 0 0 0 0 0 0 18733000 16591000 0 1350000 804600 0 16217000 17540000 14858000 0 0 0 21532000 28623000 25176000 0 0 0 4944 194 4817 92658;92659;92660;92661;92662;92663;92664;92665;92666;92667 56638;56639;56640;56641;56642;56643;56644;56645 56642 5 ELGEITR Unmodified 816.43413 0.43413207 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.864 16.679 2 0.0021977 5849 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.54 53.828 549360000 130930000 139090000 116040000 0 0 2791000 17653000 22123000 17512000 0 0 0 25328000 22652000 0 0 0 0 24999000 2805400 27436000 0 0 0 4945 529 4818 92668;92669;92670;92671;92672;92673;92674;92675;92676;92677;92678;92679 56646;56647;56648 56646 3 ELGEMDDAPDENEALK Unmodified 1774.7567 0.75672435 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.658 28.432 2 8.6238E-25 13227 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 224.24 224.24 275660000 18392000 20347000 17050000 0 879200 811060 17330000 22606000 18023000 0 5148700 4127700 20886000 18961000 17713000 13780000 9310400 9288500 20939000 19609000 17646000 2815800 0 0 4946 536 4819 92680;92681;92682;92683;92684;92685;92686;92687;92688;92689;92690;92691;92692;92693;92694;92695;92696;92697;92698;92699 56649;56650;56651;56652;56653;56654;56655;56656;56657;56658;56659;56660;56661;56662;56663;56664 56657 16 ELGEMDDAPDENEALKR Unmodified 1930.8578 0.85783538 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 2 1 2 2 2 2 2 1 1 2 2 2 1 2 2 24.012 23.108 2;3 2.8189E-24 10340 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 243.4 241.63 1031900000 42766000 55046000 40833000 3099200 3191000 3478400 76112000 78788000 85885000 27573000 24195000 27477000 56209000 41288000 43966000 74578000 65685000 58939000 64858000 56983000 59654000 11329000 14327000 15657000 4947 536 4820 92700;92701;92702;92703;92704;92705;92706;92707;92708;92709;92710;92711;92712;92713;92714;92715;92716;92717;92718;92719;92720;92721;92722;92723;92724;92725;92726;92727;92728;92729;92730;92731;92732;92733;92734;92735;92736;92737;92738;92739 56665;56666;56667;56668;56669;56670;56671;56672;56673;56674;56675;56676;56677;56678;56679;56680;56681;56682;56683;56684;56685 56675 21 ELGFNNVEEAEDGVDALNK Unmodified 2061.9491 0.94909323 837 P0AE67 cheY Chemotaxis protein CheY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 42.96 41.428 2 1.2076E-22 20286 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 241.51 227.77 582500000 203480000 189720000 175480000 2354900 1954400 1895000 3811400 0 0 0 0 0 1782200 2023100 0 0 0 0 0 0 0 0 0 0 4948 837 4821 92740;92741;92742;92743;92744;92745;92746;92747;92748 56686;56687;56688 56686 3 ELGGNYYSDPDVPPR Unmodified 1677.7635 0.76346471 1303 P27431 roxA 50S ribosomal protein L16 arginine hydroxylase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 2 1 2 1 1 1 30.111 28.699 2 6.1139E-06 12507 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 99.522 92.989 55683000 5410200 0 0 0 0 0 14314000 9517400 3390600 0 0 0 6136200 4212800 4917100 0 0 0 3668000 4117500 0 0 0 0 4949 1303 4822 92749;92750;92751;92752;92753;92754;92755;92756;92757;92758;92759;92760;92761;92762 56689;56690;56691;56692;56693;56694 56694 4 ELGGTCVNVGCVPK Unmodified 1488.7065 0.70648388 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.657 25.543 2 1.2622E-08 11370 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.24 147.71 1779200000 178510000 170120000 144640000 0 0 0 164260000 158140000 143840000 0 0 0 130170000 131440000 134270000 0 0 0 143030000 139230000 141540000 0 0 0 4950 128 4823 92763;92764;92765;92766;92767;92768;92769;92770;92771;92772;92773;92774 56695;56696;56697;56698;56699;56700;56701;56702;56703;56704;56705;56706 56703 12 ELGHSETAFLLHSDDSDVR Unmodified 2126.9869 0.98687572 1495 P37757 yddE Uncharacterized isomerase YddE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1 1 1 1 1 1 28.198 27.036 3;4 0.037642 12604 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 38.453 34.485 130330000 17323000 19304000 21795000 0 0 0 10761000 9099800 8098500 0 0 0 9954500 9508900 8291700 0 0 0 7571600 8622400 0 0 0 0 4951 1495 4824 92775;92776;92777;92778;92779;92780;92781;92782;92783;92784;92785;92786;92787 56707;56708;56709;56710 56708 4 ELGHVTLR Unmodified 923.51886 0.51886475 115 P05706 srlB Glucitol/sorbitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 14.655 15.443 2 0.00073223 5224 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.5 110.48 195890000 0 0 0 0 0 0 22478000 26824000 29312000 0 0 0 18736000 17891000 17237000 0 0 0 21609000 21448000 20354000 0 0 0 4952 115 4825 92788;92789;92790;92791;92792;92793;92794;92795;92796 56711;56712;56713;56714;56715;56716 56712 6 ELGHVTLRFDGLNEAEFPGTVHVAGPVPDDIAPGSVLK Unmodified 3953.0323 0.032316352 115 P05706 srlB Glucitol/sorbitol-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 55.314 53.911 3 0.16844 26543 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 3.8842 2.4291 268900000 30561000 42459000 36558000 0 0 0 0 0 0 0 0 0 43262000 33971000 30454000 0 0 0 0 51631000 0 0 0 0 4953 115 4826 92797;92798;92799;92800;92801;92802;92803 56717;56718 56717 2 ELGIEVR Unmodified 814.45487 0.45486751 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 2 1 1 1 1 1 23.93 23.042 2 0.0010319 9948 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.37 26.68 683390000 79616000 67519000 58210000 0 0 0 34872000 33547000 32189000 119060000 0 111280000 26718000 19321000 20524000 0 0 0 25899000 25516000 29125000 0 0 0 4954 636 4827 92804;92805;92806;92807;92808;92809;92810;92811;92812;92813;92814;92815;92816;92817;92818;92819;92820 56719;56720;56721;56722;56723;56724;56725;56726;56727;56728;56729;56730 56725 12 ELGIGWICQQGEK Unmodified 1516.7344 0.73441319 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.363 39.501 2 1.8834E-17 19705 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 211.78 211.78 1248600000 41280000 44623000 35833000 1641500 0 1488400 131800000 120710000 128190000 10517000 10996000 9244600 113070000 105350000 109160000 0 0 0 129240000 127960000 120290000 4227300 3021400 0 4955 1468 4828 92821;92822;92823;92824;92825;92826;92827;92828;92829;92830;92831;92832;92833;92834;92835;92836;92837;92838;92839 56731;56732;56733;56734;56735;56736;56737;56738;56739;56740;56741;56742;56743 56732 13 ELGIPAVVGCGDATER Unmodified 1642.7985 0.79847001 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1 1 2 2 3 1 1 1 2 2 2 1 1 1 3 2 3 2 1 1 38.085 36.431 2;3 4.3926E-06 14071 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 118.76 112.46 1344800000 123360000 104460000 118180000 9598700 8462600 9761900 84436000 96253000 100370000 17423000 14760000 15822000 84022000 72921000 72592000 7131900 4138600 3850500 128310000 117970000 113590000 11215000 14432000 11735000 4956 1210 4829 92840;92841;92842;92843;92844;92845;92846;92847;92848;92849;92850;92851;92852;92853;92854;92855;92856;92857;92858;92859;92860;92861;92862;92863;92864;92865;92866;92867;92868;92869;92870;92871;92872;92873;92874;92875;92876;92877;92878;92879;92880 56744;56745;56746;56747;56748;56749;56750;56751;56752;56753;56754;56755;56756;56757;56758;56759;56760;56761;56762;56763;56764;56765;56766;56767;56768;56769;56770;56771;56772 56756 29 ELGIQADVANVHR Unmodified 1420.7423 0.74227576 716 P0ACB4 hemG Protoporphyrinogen IX dehydrogenase [menaquinone] yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.664 23.552 3 0.0090014 7521 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 53.252 52.347 174040000 0 0 0 2415000 896850 2429600 23582000 24007000 20784000 8130400 6898000 7832900 12099000 8298900 0 0 0 0 15215000 15712000 14348000 3815100 3720100 3855900 4957 716 4830 92881;92882;92883;92884;92885;92886;92887;92888;92889;92890;92891;92892;92893;92894;92895;92896;92897 56773;56774;56775 56774 1 ELGITHIISSDLGR Unmodified 1509.8151 0.81510635 322 P0A7A2 gpmB Probable phosphoglycerate mutase GpmB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 38.883 37.209 2;3 9.0015E-06 18072 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 97.69 91.311 720620000 79157000 63928000 63028000 0 0 0 62891000 51971000 53209000 0 0 0 52150000 42284000 46792000 0 0 0 74637000 67533000 63043000 0 0 0 4958 322 4831 92898;92899;92900;92901;92902;92903;92904;92905;92906;92907;92908;92909;92910;92911;92912;92913;92914;92915;92916;92917;92918;92919;92920;92921 56776;56777;56778;56779;56780;56781;56782;56783;56784;56785;56786;56787;56788;56789;56790;56791 56782 16 ELGIVMLANK Unmodified 1086.6107 0.61071622 41 P00811 ampC Beta-lactamase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.93 37.257 2 0.0064821 17974 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 67.169 57.955 94484000 9014900 7499500 10586000 0 0 0 5371100 7537500 6198000 0 0 0 7420800 6832700 5637700 0 0 0 10552000 9346800 8487500 0 0 0 4959 41 4832 92922;92923;92924;92925;92926;92927;92928;92929;92930;92931;92932;92933 56792;56793;56794;56795;56796 56793 0 ELGLDQAIAEAAEAIPDAR Unmodified 1951.9851 0.9850848 523 P0A9H9 cheZ Protein phosphatase CheZ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 54.672 53.309 3 0.0016026 19589 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 60.528 59.496 51564000 16798000 15621000 0 5916100 7022000 6207300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4960 523 4833 92934;92935;92936;92937;92938 56797 56797 1 ELGLVATDTLR Unmodified 1186.6558 0.65575216 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.411 33.851 2 0.030398 15637 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 51.488 34.718 2167400000 183100000 156900000 147350000 520790 0 0 223100000 202300000 176870000 0 0 0 162040000 170250000 165380000 0 0 0 184520000 205170000 189860000 0 0 0 4961 258 4834 92939;92940;92941;92942;92943;92944;92945;92946;92947;92948;92949;92950;92951 56798;56799;56800;56801;56802;56803 56803 0 ELGLVDDER Unmodified 1044.5088 0.50875357 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 24.672 23.666 2 0.00025028 10330 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.19 88.391 250260000 32158000 26656000 25186000 0 0 610460 31524000 32836000 30365000 0 0 0 26598000 23685000 20637000 0 0 0 0 0 0 0 0 0 4962 280 4835 92952;92953;92954;92955;92956;92957;92958;92959;92960;92961;92962 56804;56805;56806;56807;56808;56809;56810;56811 56810 8 ELGMDPTIHDIR Unmodified 1395.6816 0.68164933 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 28.007 26.64 2;3 2.4094E-06 12003 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.98 103.77 4638900000 432060000 376960000 366860000 51853000 43783000 39401000 288680000 306830000 274120000 111770000 116620000 119080000 268840000 240250000 234660000 0 0 0 381910000 371250000 384860000 70598000 77989000 80529000 4963 61 4836 92963;92964;92965;92966;92967;92968;92969;92970;92971;92972;92973;92974;92975;92976;92977;92978;92979;92980;92981;92982;92983;92984;92985;92986;92987;92988;92989;92990;92991;92992;92993;92994;92995;92996;92997;92998;92999;93000;93001;93002;93003;93004 56812;56813;56814;56815;56816;56817;56818;56819;56820;56821;56822;56823;56824;56825;56826;56827;56828;56829;56830;56831;56832;56833;56834;56835;56836;56837;56838;56839;56840;56841;56842;56843;56844 56837 33 ELGPEPMAAAYVQPSR Unmodified 1714.8349 0.83485551 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 36.118 34.507 2;3 3.8683E-14 15998 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 177.1 167.15 1595100000 121990000 112640000 113800000 21039000 22243000 20772000 93682000 95287000 80324000 70543000 73096000 60247000 71952000 71468000 67240000 27499000 10326000 12381000 109000000 107580000 112000000 40343000 39443000 40152000 4964 61 4837 93005;93006;93007;93008;93009;93010;93011;93012;93013;93014;93015;93016;93017;93018;93019;93020;93021;93022;93023;93024;93025;93026;93027;93028;93029;93030;93031;93032;93033;93034;93035;93036;93037;93038;93039;93040;93041;93042;93043;93044;93045;93046;93047;93048;93049 56845;56846;56847;56848;56849;56850;56851;56852;56853;56854;56855;56856;56857;56858;56859;56860;56861;56862;56863;56864;56865;56866;56867;56868;56869;56870;56871;56872;56873;56874;56875;56876;56877 56875 32 ELGQSLPR Unmodified 898.48723 0.48723027 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 18.077 18.342 2 0.0010111 6782 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 113.7 80.338 105360000 0 0 0 0 0 0 35266000 37625000 31633000 835990 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4965 1246 4838 93050;93051;93052;93053 56878;56879 56879 2 ELGQYIR Unmodified 877.46577 0.46576654 237 P0A6E9 bioD2 ATP-dependent dethiobiotin synthetase BioD 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.066 21.45 2 0.0028253 8127 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.54 51.875 370600000 12302000 12851000 8281700 0 0 0 56502000 0 61472000 0 0 0 51597000 41427000 42239000 0 0 0 28969000 28245000 26712000 0 0 0 4966 237 4839 93054;93055;93056;93057;93058;93059;93060;93061;93062;93063;93064 56880 56880 1 ELGSVNDFIVDGNR Unmodified 1533.7423 0.74233534 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 39.865 37.826 2 3.8233E-08 15010 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 147.37 79.375 125480000 0 0 0 0 0 0 6114700 0 5112800 9123500 7146300 4161500 0 11713000 0 0 0 0 24957000 20437000 22921000 4153600 5332500 4304400 4967 1940 4840 93065;93066;93067;93068;93069;93070;93071;93072;93073;93074;93075;93076;93077 56881;56882;56883;56884;56885 56883 5 ELGVNQDK Unmodified 901.45051 0.45051041 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 11.886 12.763 2 0.0035665 3333 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 89.296 41.122 423650000 0 0 0 0 0 0 0 109180000 73872000 0 0 0 101950000 0 72846000 0 0 0 65804000 0 0 0 0 0 4968 1364 4841 93078;93079;93080;93081;93082;93083;93084 56886;56887;56888;56889 56888 4 ELGVPASAADITAR Unmodified 1369.7201 0.72014333 1678 P64490 yoaC Uncharacterized protein YoaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.316 30.977 2 4.603E-08 14005 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 145.28 127.76 634910000 18679000 21706000 18537000 0 0 0 98489000 116740000 115780000 0 0 0 49367000 47660000 48860000 0 0 0 32314000 29558000 37220000 0 0 0 4969 1678 4842 93085;93086;93087;93088;93089;93090;93091;93092;93093;93094;93095;93096 56890;56891;56892;56893;56894;56895;56896;56897;56898;56899;56900;56901 56900 12 ELGVSIIDGFTPVAVEGNK Unmodified 1944.0204 0.020407676 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 1 2 53.337 51.879 2;3 4.9986E-30 25623 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 223.36 212.75 530210000 0 0 0 0 0 0 114290000 109630000 115540000 3584700 3908400 2275100 46344000 47184000 48260000 0 0 0 13605000 11377000 14207000 0 0 0 4970 1861 4843 93097;93098;93099;93100;93101;93102;93103;93104;93105;93106;93107;93108;93109;93110;93111;93112;93113;93114;93115;93116 56902;56903;56904;56905;56906;56907;56908 56906 7 ELGVTSK Unmodified 732.40177 0.4017693 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 12.859 12.848 2 0.0040595 2885 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 105.39 79.833 132260000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47910000 42565000 41782000 0 0 0 0 0 0 4971 1004 4844 93117;93118;93119 56909;56910;56911 56910 3 ELGVYCELWAWDVTEAQIR Unmodified 2337.11 0.10996774 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.224 53.751 2 2.1569E-55 26384 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 276.25 271.17 223290000 17246000 13980000 13360000 0 0 0 14883000 11290000 14380000 0 0 0 25854000 23792000 21545000 0 0 0 20910000 22867000 23178000 0 0 0 4972 86 4845 93120;93121;93122;93123;93124;93125;93126;93127;93128;93129;93130;93131 56912;56913;56914;56915;56916 56914 5 ELGWLPQETFESGMR Unmodified 1778.8298 0.82977013 1308 P27830 rffG dTDP-glucose 4,6-dehydratase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 49.793 48.504 2 3.9089E-06 24135 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.12 121.17 255980000 11841000 11290000 11046000 0 0 0 16800000 16130000 13884000 0 0 0 23424000 26880000 24624000 0 0 8026200 32432000 31152000 28447000 0 0 0 4973 1308 4846 93132;93133;93134;93135;93136;93137;93138;93139;93140;93141;93142;93143;93144 56917;56918;56919;56920;56921;56922 56917 6 ELGWQDIK Unmodified 987.50255 0.50254598 200 P09126 hemD Uroporphyrinogen-III synthase yes yes 0 0 0 By MS/MS 1 31.976 30.274 2 0.026004 14490 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 66.429 41.507 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4974 200 4847 93145 56923 56923 1 ELGYAAVDDETTQQTMR Unmodified 1926.8629 0.86292076 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 29.515 28.26 2;3 6.5823E-40 12637 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 321.01 319.03 723190000 91406000 91334000 86218000 0 996480 1113600 20288000 27108000 26152000 0 0 0 51572000 50873000 53211000 0 0 0 69737000 67183000 85997000 0 0 0 4975 52 4848 93146;93147;93148;93149;93150;93151;93152;93153;93154;93155;93156;93157;93158;93159;93160;93161;93162;93163;93164;93165;93166;93167;93168;93169;93170 56924;56925;56926;56927;56928;56929;56930;56931;56932;56933;56934;56935;56936;56937;56938 56934 15 ELGYLGSLAICNVPGSSLVR Unmodified 2104.0987 0.098674772 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.972 51.549 2;3 5.4621E-46 25302 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 322.07 318.6 3389100000 277610000 262220000 200090000 0 0 0 279530000 274410000 287900000 0 0 0 280500000 264960000 256940000 0 0 0 323460000 329410000 352090000 0 0 0 4976 1137 4849 93171;93172;93173;93174;93175;93176;93177;93178;93179;93180;93181;93182;93183;93184;93185;93186;93187;93188;93189;93190;93191;93192;93193;93194 56939;56940;56941;56942;56943;56944;56945;56946;56947;56948;56949;56950;56951;56952;56953;56954;56955;56956;56957;56958;56959;56960;56961;56962 56953 24 ELGYLVPQPER Unmodified 1299.6823 0.68230126 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1 1 1 1 1 1 1 33.991 32.573 2 6.6781E-05 15400 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.2 146.43 1003300000 180170000 182510000 166920000 0 0 0 62549000 62348000 52640000 0 0 0 37688000 33417000 30579000 0 0 0 68060000 66337000 60064000 0 0 0 4977 1465 4850 93195;93196;93197;93198;93199;93200;93201;93202;93203;93204;93205;93206;93207;93208 56963;56964;56965;56966;56967;56968;56969;56970;56971;56972 56968 10 ELGYTSEPHAAVAYR Unmodified 1662.8002 0.80018457 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 21.459 21.737 2;3 1.3549E-45 8587 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 281.13 267.32 1617500000 208000000 207710000 193980000 1229500 1306400 1674400 86337000 74271000 67391000 0 0 0 115650000 104900000 74162000 0 0 0 155300000 165560000 158750000 0 0 1323100 4978 52 4851 93209;93210;93211;93212;93213;93214;93215;93216;93217;93218;93219;93220;93221;93222;93223;93224;93225;93226;93227;93228;93229;93230;93231;93232;93233;93234;93235;93236 56973;56974;56975;56976;56977;56978;56979;56980;56981;56982;56983;56984;56985;56986;56987;56988;56989;56990;56991;56992;56993 56987 21 ELHEETVR Unmodified 1011.4985 0.49852324 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 10.775 11.55 2 0.024481 2912 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 77.674 58.892 382950000 15664000 17278000 13009000 0 0 0 101140000 98143000 97756000 0 0 0 0 0 0 0 0 0 12567000 13448000 13952000 0 0 0 4979 1191 4852 93237;93238;93239;93240;93241;93242;93243;93244;93245 56994;56995;56996;56997 56994 0 ELHEETVRK Unmodified 1139.5935 0.59348625 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 5.2544 6.1422 2 0.00069269 1302 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.29 100.85 15793000 0 0 0 0 0 0 6256400 4588100 4948800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4980 1191 4853 93246;93247;93248 56998;56999;57000 57000 3 ELHGMTEEVYLDEMVGR Unmodified 2006.9078 0.90776246 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 41.302 39.544 3 1.2068E-14 19719 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.83 173.93 171730000 0 0 0 0 0 0 31920000 36227000 36454000 0 0 0 23785000 18474000 20517000 0 0 0 2689000 0 1668700 0 0 0 4981 520 4854 93249;93250;93251;93252;93253;93254;93255;93256 57001;57002;57003;57004 57001 2 ELHHGHR Unmodified 884.43653 0.4365321 251 P0A6J1 cysC Adenylyl-sulfate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 3.5327 4.4313 2 0.0040528 574 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 105.42 105.42 68333000 4401300 4277600 3413900 0 178840 140660 0 0 0 0 0 0 4820900 3255300 5033200 0 0 0 16623000 15145000 11043000 0 0 0 4982 251 4855 93257;93258;93259;93260;93261;93262;93263;93264;93265;93266;93267 57005;57006;57007;57008;57009;57010;57011;57012;57013 57006 9 ELHMEQPGDYCITYNGALVQK Unmodified 2465.1355 0.13553056 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.291 35.617 3 3.5184E-15 17252 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.07 137.76 201360000 13054000 16465000 11955000 0 0 0 21894000 17533000 19747000 0 0 0 12326000 12680000 9809000 0 0 0 25653000 20711000 19534000 0 0 0 4983 473 4856 93268;93269;93270;93271;93272;93273;93274;93275;93276;93277;93278;93279 57014;57015;57016;57017;57018;57019 57016 6 ELHTIKLPLPTQYQTAIK Unmodified 2093.1885 0.18847606 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 34.981 34.773 3;4 1.3031E-09 12391 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 114.01 110.63 169480000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61591000 42470000 53114000 0 0 0 0 12307000 0 4984 1616 4857 93280;93281;93282;93283;93284;93285;93286 57020;57021;57022;57023 57020 4 ELHYSPSAVAR Unmodified 1228.62 0.62003536 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 15.473 16.292 2;3 1.4739E-05 5527 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 142.04 137.08 475240000 56812000 49759000 33150000 6620500 6633400 6559400 36596000 41514000 39654000 0 0 1054300 36944000 24821000 26709000 0 0 0 37211000 34860000 36342000 0 0 0 4985 740 4858 93287;93288;93289;93290;93291;93292;93293;93294;93295;93296;93297;93298;93299;93300;93301;93302;93303;93304;93305;93306;93307;93308;93309;93310;93311;93312;93313;93314;93315;93316;93317 57024;57025;57026;57027;57028;57029;57030;57031;57032;57033;57034;57035;57036;57037;57038;57039;57040 57032 15 ELIGLLADSGIR Unmodified 1255.7136 0.71360139 1234 P24173 rfaC Lipopolysaccharide heptosyltransferase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.108 46.543 2 3.2429E-06 18588 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 136.63 99.159 56947000 5081400 3311300 4356000 0 0 0 0 0 0 4826200 3865900 4640200 0 0 0 0 0 0 14458000 16408000 0 0 0 0 4986 1234 4859 93318;93319;93320;93321;93322;93323;93324;93325 57041;57042;57043;57044;57045 57043 5 ELIIGDR Unmodified 814.45487 0.45486751 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.906 22.222 2 0.00021335 7562 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 164.89 38.855 5990000000 158330000 163440000 130160000 37586000 47048000 45261000 506570000 534210000 545290000 83176000 124510000 118810000 567380000 436390000 442610000 0 0 0 562420000 544870000 616390000 102500000 116530000 106530000 4987 645 4860 93326;93327;93328;93329;93330;93331;93332;93333;93334;93335;93336;93337;93338;93339;93340;93341;93342;93343;93344;93345;93346 57046;57047;57048;57049;57050;57051;57052;57053;57054;57055;57056;57057;57058 57046 13 ELINTTGDYAHIAE Unmodified 1545.7311 0.73110195 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.862 33.414 2 1.9418E-05 15285 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 98.04 95.308 192440000 17390000 15680000 14011000 0 0 0 13335000 15123000 18214000 0 0 0 14241000 15074000 17453000 0 0 0 17866000 18526000 15524000 0 0 0 4988 1979 4861 93347;93348;93349;93350;93351;93352;93353;93354;93355;93356;93357;93358 57059;57060;57061;57062;57063;57064 57064 6 ELIPGGVNSPVR Unmodified 1236.6826 0.68263561 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.205 28.827 2 3.3244E-05 13710 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 112.75 108.14 2596100000 225700000 193660000 178090000 3674300 2816400 2875600 202450000 199520000 196340000 28829000 29773000 28896000 184250000 192930000 162510000 12576000 8417200 7478700 234740000 236620000 229570000 11248000 12103000 11038000 4989 1227 4862 93359;93360;93361;93362;93363;93364;93365;93366;93367;93368;93369;93370;93371;93372;93373;93374;93375;93376;93377;93378;93379;93380;93381;93382 57065;57066;57067;57068;57069;57070;57071;57072;57073;57074;57075;57076;57077;57078;57079;57080;57081;57082;57083;57084 57072 17 ELIPGSELWPR Unmodified 1295.6874 0.68738664 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 46.366 44.905 2 9.8911E-05 21933 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 141.48 138.22 185500000 44986000 41278000 41681000 0 0 0 4154200 5441100 0 0 0 0 6086800 5857600 5578400 0 0 0 11477000 10780000 8178700 0 0 0 4990 1107 4863 93383;93384;93385;93386;93387;93388;93389;93390;93391;93392;93393 57085;57086;57087;57088 57086 4 ELISGFADYVLQR Unmodified 1509.7827 0.78274359 1303 P27431 roxA 50S ribosomal protein L16 arginine hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 2 52.041 50.754 2;3 5.9117E-13 23719 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 199.67 195.37 854860000 74943000 77200000 67723000 1733900 0 0 74678000 70705000 76187000 0 2746600 1685700 64792000 60051000 51965000 0 0 0 62723000 71929000 77731000 6429600 4710300 6929000 4991 1303 4864 93394;93395;93396;93397;93398;93399;93400;93401;93402;93403;93404;93405;93406;93407;93408;93409;93410;93411;93412;93413;93414;93415;93416;93417;93418;93419;93420;93421;93422;93423;93424;93425;93426 57089;57090;57091;57092;57093;57094;57095;57096;57097;57098;57099;57100;57101;57102;57103;57104;57105;57106;57107;57108;57109;57110 57109 22 ELISNASDAADK Unmodified 1232.5885 0.58846046 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.074 16.889 2 3.1877E-08 5877 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 163.64 151.01 2251500000 202420000 215170000 174430000 0 0 0 192420000 217520000 199210000 0 0 0 169360000 148040000 152270000 0 0 0 198720000 187990000 193930000 0 0 0 4992 295 4865 93427;93428;93429;93430;93431;93432;93433;93434;93435;93436;93437;93438 57111;57112;57113;57114;57115;57116;57117;57118;57119;57120 57115 7 ELISNASDAADKLR Unmodified 1501.7736 0.77363546 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.698 22.95 3 3.778E-08 9947 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 129.76 118.99 258310000 41640000 41198000 39880000 7222100 6413300 6916900 13849000 0 0 0 0 0 12834000 8569200 0 0 0 0 19359000 29058000 31371000 0 0 0 4993 295 4866 93439;93440;93441;93442;93443;93444;93445;93446;93447;93448;93449;93450 57121;57122;57123;57124;57125;57126;57127;57128;57129;57130 57126 7 ELITDFGVK Unmodified 1020.5492 0.54916182 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 36.317 34.75 1;2 0.00037725 17107 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.82 57.291 3454900000 64820000 55317000 64713000 0 0 0 749600000 742570000 725310000 0 0 0 77117000 78605000 73300000 0 0 0 301580000 252690000 269290000 0 0 0 4994 669 4867 93451;93452;93453;93454;93455;93456;93457;93458;93459;93460;93461;93462;93463;93464;93465;93466;93467;93468;93469;93470;93471;93472;93473 57131;57132;57133;57134;57135;57136;57137 57131 5 ELITDFGVKK Unmodified 1148.6441 0.64412484 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.935 24.84 3 0.001824 11254 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 70.056 56.965 393800000 9905600 8758700 10718000 0 0 0 71204000 72496000 66088000 0 0 0 9878200 7907900 9336600 0 0 0 42470000 43573000 41465000 0 0 0 4995 669 4868 93474;93475;93476;93477;93478;93479;93480;93481;93482;93483;93484;93485 57138;57139;57140;57141;57142;57143;57144;57145;57146;57147;57148 57141 11 ELITELIELHEK Unmodified 1465.8028 0.80281033 1743 P69791 chbA N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.572 42.23 3 6.3624E-07 20938 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.47 128.61 154240000 0 0 0 0 0 0 17896000 16280000 12443000 2558800 0 1955000 22252000 20626000 22396000 3993400 4731300 3234500 8960000 8111300 8804100 0 0 0 4996 1743 4869 93486;93487;93488;93489;93490;93491;93492;93493;93494;93495;93496;93497;93498;93499 57149;57150;57151;57152;57153;57154;57155;57156;57157 57151 9 ELIVASSYSK Unmodified 1095.5812 0.58119023 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 23.191 22.456 2 0.00019638 9762 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.2 135.09 2873900000 291160000 283670000 287770000 1005800 0 0 239530000 227620000 266700000 0 0 0 180170000 183880000 188920000 0 0 0 223640000 251850000 247950000 0 0 0 4997 31 4870 93500;93501;93502;93503;93504;93505;93506;93507;93508;93509;93510;93511;93512;93513 57158;57159;57160;57161;57162;57163;57164;57165;57166;57167;57168;57169;57170 57162 12 ELIYQPTLTEADLSDEQTVTR Unmodified 2421.1911 0.19111441 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 1 1 2 2 2 1 1 1 44.916 43.346 2;3 6.9199E-28 20234 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 240.2 219.77 1207500000 88545000 72693000 71426000 3258800 3287300 3027000 86116000 82199000 72365000 16446000 37471000 38427000 85839000 79641000 77863000 9549000 8118900 0 111020000 110230000 113480000 13316000 12506000 10631000 4998 883 4871 93514;93515;93516;93517;93518;93519;93520;93521;93522;93523;93524;93525;93526;93527;93528;93529;93530;93531;93532;93533;93534;93535;93536;93537;93538;93539;93540;93541;93542;93543;93544;93545;93546;93547;93548;93549;93550 57171;57172;57173;57174;57175;57176;57177;57178;57179;57180;57181;57182;57183;57184;57185;57186;57187;57188;57189;57190;57191;57192;57193;57194;57195;57196;57197;57198;57199;57200;57201 57201 31 ELKEEVGFGANDLTFLK Unmodified 1908.9833 0.98329389 1581 P45799 nudE ADP compounds hydrolase NudE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 1 1 2 2 2 44.577 43.089 2;3 1.1401E-06 20974 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.507 94.903 189860000 24769000 23417000 20318000 0 0 0 11852000 10339000 9437000 0 0 0 10842000 9059200 8522400 0 0 0 24075000 19466000 17759000 0 0 0 4999 1581 4872 93551;93552;93553;93554;93555;93556;93557;93558;93559;93560;93561;93562;93563;93564;93565;93566;93567;93568;93569;93570 57202;57203;57204;57205;57206;57207;57208;57209;57210;57211 57208 10 ELKGYMTR Unmodified 996.50625 0.50625115 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 1 By MS/MS 1 13.712 13.712 2 0.041585 3384 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 65.252 54.838 4578400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4578400 0 0 0 0 0 0 0 0 5000 712 4873 93571 57212 57212 1 ELKLDYELKPMDFSGIIPALQTK Unmodified 2648.4135 0.41352655 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 2 1 2 2 2 2 2 1 1 1 53.167 51.862 3;4 5.4648E-11 25286 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 133.48 130.87 679040000 153360000 133870000 135450000 0 0 1096800 17536000 6357700 14849000 0 0 0 50370000 51968000 50955000 2074300 0 0 16071000 24503000 20584000 0 0 0 5001 877 4874 93572;93573;93574;93575;93576;93577;93578;93579;93580;93581;93582;93583;93584;93585;93586;93587;93588;93589;93590;93591;93592;93593;93594 57213;57214;57215;57216;57217;57218;57219;57220;57221 57218 9 ELKPHDR Unmodified 893.47191 0.47191456 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.129 6.0258 2 0.10763 854 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 60.788 56.57 819740000 134190000 150930000 118590000 3323400 4120800 4715500 69979000 63331000 61837000 0 0 0 43733000 39163000 27063000 0 0 0 36215000 32034000 30513000 0 0 0 5002 546 4875 93595;93596;93597;93598;93599;93600;93601;93602;93603;93604;93605;93606;93607;93608;93609 57222;57223;57224 57222 3 ELKVNVGDK Unmodified 1000.5553 0.55530983 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 13.174 13.78 2 0.00022288 3425 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 132.76 0 542350000 0 0 0 34150000 117790000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 136510000 121680000 132230000 5003 133 4876 93610;93611;93612;93613;93614;93615 57225;57226;57227;57228 57225 4 ELKVNVGDKVK Unmodified 1227.7187 0.71868677 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 2 2 2 13.102 13.607 2;3 3.7772E-10 2926 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 227.94 170.35 1149400000 0 0 0 275310000 263340000 244110000 0 0 0 6413700 1268200 2165500 0 0 0 0 5165800 0 0 0 0 88924000 135570000 127120000 5004 133 4877 93616;93617;93618;93619;93620;93621;93622;93623;93624;93625;93626;93627;93628;93629;93630;93631;93632 57229;57230;57231;57232;57233;57234;57235;57236;57237;57238;57239;57240 57235 12 ELLAALNHHETALR Unmodified 1586.8529 0.85288884 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 3 3 3 3 3 3 23.765 22.956 2;3;4 3.0714E-14 9941 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.42 162.27 1144700000 130470000 137200000 127850000 0 538170 0 76337000 85440000 83050000 0 0 0 83908000 69497000 67996000 0 0 0 94930000 83457000 104020000 0 0 0 5005 137 4878 93633;93634;93635;93636;93637;93638;93639;93640;93641;93642;93643;93644;93645;93646;93647;93648;93649;93650;93651;93652;93653;93654;93655;93656;93657;93658;93659;93660;93661;93662;93663;93664;93665;93666;93667;93668;93669 57241;57242;57243;57244;57245;57246;57247;57248;57249;57250;57251;57252;57253;57254;57255;57256;57257;57258;57259;57260;57261;57262;57263;57264;57265 57254 25 ELLAEIAELSDK Unmodified 1329.7028 0.70276193 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 48.697 47.477 2 1.3994E-11 23025 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 215.06 209.75 2912200000 158050000 145140000 129820000 0 0 0 357900000 363500000 366190000 0 0 0 228790000 209250000 211770000 0 0 1350800 261400000 240490000 238510000 0 0 0 5006 1437 4879 93670;93671;93672;93673;93674;93675;93676;93677;93678;93679;93680;93681;93682 57266;57267;57268;57269;57270;57271;57272;57273;57274;57275;57276;57277;57278 57270 13 ELLAFDAPDLDLFHPAEVSPDEAIELAAR Unmodified 3163.5714 0.57136041 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.151 53.678 3 3.5755E-16 26422 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.12 129.7 678010000 81061000 65047000 49439000 0 0 0 45619000 35135000 52742000 0 0 0 57528000 56717000 55993000 0 0 0 59689000 59648000 59393000 0 0 0 5007 948 4880 93683;93684;93685;93686;93687;93688;93689;93690;93691;93692;93693;93694 57279;57280;57281;57282;57283 57281 5 ELLAGVATNTAYLDGLMKPYLSR Unmodified 2495.3094 0.30939583 316 P0A780 nusB N utilization substance protein B yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.694 52.458 3 6.3875E-36 25507 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 220.62 218.63 1279400000 89109000 80722000 77063000 13810000 14551000 13483000 93201000 94908000 96565000 39927000 49766000 40064000 62823000 58403000 48518000 16408000 30620000 34370000 96834000 89939000 90341000 14229000 14693000 19097000 5008 316 4881 93695;93696;93697;93698;93699;93700;93701;93702;93703;93704;93705;93706;93707;93708;93709;93710;93711;93712;93713;93714;93715;93716;93717;93718 57284;57285;57286;57287;57288;57289;57290;57291;57292;57293;57294;57295;57296;57297;57298 57291 15 ELLAGVPDLASR Unmodified 1239.6823 0.68230126 1779 P75824 hcr NADH oxidoreductase HCR yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 41.398 39.646 2 9.6414E-05 18682 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 88.496 79.633 70986000 0 0 0 0 0 0 11855000 11475000 10507000 0 0 0 8834600 6359300 5268400 0 0 0 5716800 6180900 4788800 0 0 0 5009 1779 4882 93719;93720;93721;93722;93723;93724;93725;93726;93727 57299;57300 57299 0 ELLAWQEK Unmodified 1015.5338 0.53384611 120 P05804 uidA Beta-glucuronidase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 30.379 28.936 2 0.01604 13379 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 69.198 60.929 18429000 5789900 0 3433100 0 0 0 3167300 3933200 0 0 0 0 2105200 0 0 0 0 0 0 0 0 0 0 0 5010 120 4883 93728;93729;93730;93731;93732 57301 57301 1 ELLDAAIAAK Unmodified 1013.5757 0.57571092 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31.579 30.138 2 0.00064327 14010 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.698 72.458 416510000 53167000 52708000 41676000 1921700 0 2048500 0 0 77538000 8131800 4076600 4883200 0 61642000 0 0 383770 2268500 96897000 0 0 5903600 3262600 0 5011 294 4884 93733;93734;93735;93736;93737;93738;93739;93740;93741;93742;93743;93744;93745;93746;93747;93748;93749;93750;93751;93752 57302;57303;57304;57305;57306;57307;57308;57309;57310;57311;57312;57313 57310 11 ELLDQIAELLR Unmodified 1311.7398 0.73981614 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.652 54.171 2 2.4411E-14 26881 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 262.18 242.91 1090400000 81157000 77753000 85238000 0 0 0 67978000 66488000 65527000 2746600 0 0 112150000 116700000 97214000 0 0 0 106240000 114380000 95468000 1375400 0 0 5012 882 4885 93753;93754;93755;93756;93757;93758;93759;93760;93761;93762;93763;93764;93765;93766 57314;57315;57316;57317;57318;57319;57320;57321;57322;57323;57324;57325 57316 12 ELLDQLNK Unmodified 971.52876 0.52876073 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.042 25.493 2 0.010593 8356 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 78.149 60.014 67175000 0 0 0 10759000 11095000 10956000 0 0 0 4492600 4221700 4423700 0 0 0 0 0 0 0 0 0 6022300 6688500 8515700 5013 1899 4886 93767;93768;93769;93770;93771;93772;93773;93774;93775 57326;57327;57328 57328 3 ELLEDPTR Unmodified 971.49238 0.49237523 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 21.173 21.358 2 0.00081525 8655 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.99 78.989 5713500000 407730000 357900000 306020000 12733000 10750000 11659000 275660000 255160000 249790000 0 12020000 9276800 466140000 385000000 372660000 5823400 4621400 4932100 895720000 829370000 741460000 33037000 30181000 35826000 5014 938 4887 93776;93777;93778;93779;93780;93781;93782;93783;93784;93785;93786;93787;93788;93789;93790;93791;93792;93793;93794;93795;93796;93797;93798;93799;93800;93801;93802 57329;57330;57331;57332;57333;57334;57335;57336;57337;57338;57339;57340;57341;57342;57343;57344;57345;57346;57347;57348;57349;57350 57335 21 ELLEIEGLDEPTVEALR Unmodified 1924.9993 0.99933788 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 52.201 51.081 2;3 6.0849E-31 19226 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 289.75 227.45 7596900000 164140000 168160000 161640000 0 0 0 89226000 91485000 96748000 378000000 309910000 298630000 131890000 150900000 165170000 791420000 1162700000 985230000 154550000 147200000 156320000 689200000 660620000 643680000 5015 935 4888 93803;93804;93805;93806;93807;93808;93809;93810;93811;93812;93813;93814;93815;93816;93817;93818;93819;93820;93821;93822;93823;93824;93825;93826;93827;93828;93829;93830;93831;93832;93833;93834;93835;93836;93837;93838;93839;93840;93841;93842;93843;93844 57351;57352;57353;57354;57355;57356;57357;57358;57359;57360;57361;57362;57363;57364;57365;57366;57367;57368;57369;57370;57371;57372;57373;57374;57375;57376;57377;57378;57379;57380;57381;57382;57383 57355 33 ELLEIEGLDEPTVEALRER Unmodified 2210.143 0.14304201 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 3 3 2 2 2 46.65 45.509 2;3 1.3588E-55 17945 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 316.42 289.87 2063000000 0 0 0 1032000 0 0 0 0 0 105660000 96623000 103050000 0 0 0 351320000 330730000 342310000 0 0 0 197970000 279590000 254730000 5016 935 4889 93845;93846;93847;93848;93849;93850;93851;93852;93853;93854;93855;93856;93857;93858;93859;93860;93861;93862;93863;93864;93865 57384;57385;57386;57387;57388;57389;57390;57391;57392;57393;57394;57395;57396;57397;57398;57399 57399 15 ELLGMKPDEWR Unmodified 1372.6809 0.68092105 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 1 2 1 1 33.035 31.4 2;3 7.2184E-05 14940 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.84 109.4 700850000 143910000 126670000 122590000 24146000 24306000 26332000 0 19392000 18778000 14919000 15974000 17201000 17265000 19916000 15515000 3494000 0 0 23984000 26033000 27113000 9961700 1745600 1605400 5017 1935 4890 93866;93867;93868;93869;93870;93871;93872;93873;93874;93875;93876;93877;93878;93879;93880;93881;93882;93883;93884;93885;93886;93887;93888;93889;93890;93891;93892;93893;93894;93895;93896;93897 57400;57401;57402;57403;57404;57405;57406;57407;57408;57409;57410;57411;57412;57413;57414;57415;57416;57417 57411 18 ELLGQLLLDEIVTR Unmodified 1610.9243 0.92432245 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.764 54.306 2 1.1338E-19 26794 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 214.04 207.6 476000000 35575000 45601000 37559000 0 644000 0 44093000 27191000 35102000 0 0 0 41734000 37748000 42406000 0 0 0 48890000 38721000 36234000 2095500 2406400 0 5018 670 4891 93898;93899;93900;93901;93902;93903;93904;93905;93906;93907;93908;93909;93910;93911;93912 57418;57419;57420;57421;57422 57418 5 ELLHDCLTR Unmodified 1155.5706 0.57064232 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 19.156 19.546 2;3 0.0028724 7058 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 61.78 56.056 67925000 0 0 0 0 5073300 5937000 0 0 4591600 0 0 0 11202000 0 7559200 0 0 0 0 0 1266800 10992000 9966800 11336000 5019 1964 4892 93913;93914;93915;93916;93917;93918;93919;93920;93921;93922;93923;93924;93925;93926 57423;57424;57425;57426;57427;57428;57429 57429 4 ELLHYCLER Unmodified 1231.6019 0.60194245 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 25.351 24.197 2;3 4.9357E-06 11114 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 173.73 168.74 1825700000 118640000 116820000 109830000 0 0 0 181120000 179450000 170440000 32713000 32215000 33492000 139780000 139590000 110200000 0 0 0 147890000 163030000 147120000 3334800 0 0 5020 1716 4893 93927;93928;93929;93930;93931;93932;93933;93934;93935;93936;93937;93938;93939;93940;93941;93942;93943;93944;93945;93946;93947;93948;93949;93950;93951;93952;93953;93954;93955;93956;93957 57430;57431;57432;57433;57434;57435;57436;57437;57438;57439;57440;57441;57442;57443;57444;57445;57446;57447;57448;57449;57450;57451;57452;57453;57454;57455;57456;57457;57458;57459 57437 30 ELLIDESLIGWK Unmodified 1414.7708 0.77078192 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.767 52.343 2 5.0798E-07 25895 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 154.56 147.96 1277900000 273430000 264600000 269480000 0 0 0 0 2683200 3058600 0 0 0 31496000 34565000 32254000 0 0 0 134700000 120430000 111180000 0 0 0 5021 65 4894 93958;93959;93960;93961;93962;93963;93964;93965;93966;93967;93968 57460;57461;57462 57460 3 ELLIEAQNLGLGAQFGGK Unmodified 1856.9996 0.99961265 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 50.625 49.265 2;3 4.4641E-22 23988 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 222.49 212.98 982260000 151330000 134390000 128530000 0 0 0 55980000 51799000 39413000 0 0 0 57526000 21362000 49714000 0 0 0 107500000 99841000 84876000 0 0 0 5022 696 4895 93969;93970;93971;93972;93973;93974;93975;93976;93977;93978;93979;93980;93981;93982;93983;93984;93985;93986;93987;93988;93989;93990;93991 57463;57464;57465;57466;57467;57468;57469;57470;57471;57472;57473;57474;57475;57476;57477;57478;57479;57480 57467 12 ELLLSDEYAEQK Unmodified 1436.7035 0.70349021 972 P0AFY8 seqA Negative modulator of initiation of replication yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.635 31.281 2 0.00016224 14777 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.4 64.983 69514000 7845100 5365300 4569700 0 0 0 4714800 3762400 4737700 0 0 0 5732700 6284700 4399600 0 0 0 5652500 8746500 7702700 0 0 0 5023 972 4896 93992;93993;93994;93995;93996;93997;93998;93999;94000;94001;94002;94003 57481;57482;57483;57484;57485 57482 0 ELLLSNPNSTPDFSVDDSEGVAETNEDF Unmodified 3040.3309 0.33091495 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.029 53.57 3 0.14741 21761 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 20.723 20.723 173490000 0 0 5521400 0 0 0 0 0 0 33678000 30956000 28600000 0 10389000 9527900 0 0 0 9936500 11565000 13913000 10775000 5849100 2779800 5024 343 4897 94004;94005;94006;94007;94008;94009;94010;94011;94012;94013;94014;94015 57486;57487 57486 2 ELLMEIVEIAR Unmodified 1314.7217 0.72172323 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.282 52.921 2 3.7769E-10 26280 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 183.43 177.65 313700000 28756000 22156000 22176000 0 0 1091200 21282000 21888000 21142000 2943300 0 2896700 23974000 17958000 21584000 2724300 0 0 39471000 33752000 29910000 0 0 0 5025 491 4898 94016;94017;94018;94019;94020;94021;94022;94023;94024;94025;94026;94027;94028;94029;94030;94031 57488;57489;57490;57491;57492;57493;57494;57495;57496;57497;57498 57488 11 ELLNDLQR Unmodified 999.53491 0.53490874 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.344 25.26 2 0.010005 10819 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 79.116 29.758 296170000 19380000 17259000 16931000 0 1405100 0 21539000 25320000 20613000 5973400 5261900 4529000 17867000 20477000 18240000 2119800 1420400 2038500 22864000 28084000 28429000 4831700 6349800 5235900 5026 1197 4899 94032;94033;94034;94035;94036;94037;94038;94039;94040;94041;94042;94043;94044;94045;94046;94047;94048;94049;94050;94051;94052;94053 57499;57500;57501;57502;57503;57504 57504 2 ELLNFTLLSDEDHQVCEQFGVWGEK Unmodified 2992.3913 0.39128756 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.215 52.769 3 3.1165E-50 25851 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 230.49 227.56 2203600000 308500000 284280000 288840000 0 0 0 111900000 110990000 100160000 0 0 0 138730000 155620000 121280000 0 0 0 189350000 204630000 189330000 0 0 0 5027 834 4900 94054;94055;94056;94057;94058;94059;94060;94061;94062;94063;94064;94065 57505;57506;57507;57508;57509;57510;57511;57512;57513;57514;57515;57516 57509 12 ELLPLIPAEK Unmodified 1121.6696 0.66961131 1314 P27859 tatD Tat-linked quality control protein TatD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.435 41.92 2 0.0042391 19471 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 68.371 61.921 79534000 6119900 6609300 6539900 0 0 0 6372600 5592200 6714400 0 0 0 5798000 5884300 5431700 0 0 0 7671300 8545700 8255000 0 0 0 5028 1314 4901 94066;94067;94068;94069;94070;94071;94072;94073;94074;94075;94076;94077 57517;57518 57518 2 ELLPPVALLEK Unmodified 1220.738 0.73802523 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.716 49.336 2 0.00013743 23781 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 112.71 111.09 1444800000 241010000 220400000 205080000 2996600 4445900 4188100 71917000 83144000 76962000 6429300 7626200 8335600 77941000 69093000 73209000 0 0 0 90882000 96008000 85991000 7161300 5864400 6118200 5029 639 4902 94078;94079;94080;94081;94082;94083;94084;94085;94086;94087;94088;94089;94090;94091;94092;94093;94094;94095;94096;94097;94098 57519;57520;57521;57522;57523;57524;57525;57526;57527;57528;57529;57530;57531;57532;57533;57534;57535;57536 57530 18 ELLPPVALLEKFPATENAANTVAHAR Unmodified 2771.497 0.49701368 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.371 48.934 4 2.4376E-07 17560 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 105.79 105.47 33084000 0 0 0 4336700 4395700 5000500 0 0 0 3996300 2296800 2924500 0 0 0 0 0 0 0 0 0 0 3730400 6403400 5030 639 4903 94099;94100;94101;94102;94103;94104;94105;94106 57537;57538;57539 57537 3 ELLSIGIQPDILICR Unmodified 1738.9651 0.9651414 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 1 54.439 53.008 2;3 4.1513E-27 26230 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 286.95 284.97 3232400000 201640000 207640000 186710000 0 0 0 214140000 176060000 153370000 0 0 0 367360000 316110000 282370000 0 0 0 398070000 379740000 349150000 0 0 0 5031 337 4904 94107;94108;94109;94110;94111;94112;94113;94114;94115;94116;94117;94118;94119;94120;94121;94122;94123 57540;57541;57542;57543;57544;57545;57546;57547;57548;57549;57550;57551;57552;57553;57554;57555 57541 16 ELLSQYDFPGDDTPIVR Unmodified 1963.9527 0.95272204 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 2 2 2 5 5 4 2 2 2 4 4 4 2 2 2 4 3 3 2 2 2 48.301 46.949 2;3;4 1.5694E-75 21884 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 333.58 327.88 54362000000 3830000000 4043900000 3622000000 73122000 73800000 72037000 5288400000 5184200000 5166700000 50522000 55012000 51831000 4025700000 3936900000 4054500000 48539000 31437000 32267000 5298400000 4951400000 4352800000 40079000 42285000 36680000 5032 1048 4905 94124;94125;94126;94127;94128;94129;94130;94131;94132;94133;94134;94135;94136;94137;94138;94139;94140;94141;94142;94143;94144;94145;94146;94147;94148;94149;94150;94151;94152;94153;94154;94155;94156;94157;94158;94159;94160;94161;94162;94163;94164;94165;94166;94167;94168;94169;94170;94171;94172;94173;94174;94175;94176;94177;94178;94179;94180;94181;94182;94183;94184;94185;94186;94187;94188;94189;94190;94191;94192;94193;94194 57556;57557;57558;57559;57560;57561;57562;57563;57564;57565;57566;57567;57568;57569;57570;57571;57572;57573;57574;57575;57576;57577;57578;57579;57580;57581;57582;57583;57584;57585;57586;57587;57588;57589;57590;57591;57592;57593;57594;57595;57596;57597;57598;57599;57600;57601;57602;57603;57604;57605;57606;57607;57608;57609;57610;57611;57612;57613;57614;57615;57616;57617;57618;57619;57620;57621;57622;57623;57624;57625;57626;57627;57628;57629;57630;57631;57632;57633;57634;57635;57636;57637;57638;57639;57640;57641;57642 57623 87 ELLTNDPFSSR Unmodified 1277.6252 0.62518031 1776 P75818 ybjP Uncharacterized lipoprotein YbjP yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 35.213 33.435 2 0.000158 13196 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 109.88 95.671 108110000 0 0 8568800 0 6212200 0 33931000 0 30450000 0 6471900 6276100 0 0 0 0 0 0 0 8772600 7430600 0 0 0 5033 1776 4906 94195;94196;94197;94198;94199;94200;94201;94202;94203 57643;57644;57645 57643 3 ELLTQMGHLYGHVADELATPSSAILDIER Unmodified 3178.5969 0.59686366 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 52.553 51.281 3;4 1.1851E-80 24944 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 281.98 279.62 5919700000 820340000 903240000 743180000 3258000 1374000 2352700 451760000 439690000 435350000 2358800 2937600 2420700 324000000 276350000 236460000 0 0 0 424340000 385590000 464740000 0 0 0 5034 549 4907 94204;94205;94206;94207;94208;94209;94210;94211;94212;94213;94214;94215;94216;94217;94218;94219;94220;94221;94222;94223;94224;94225;94226;94227;94228;94229;94230;94231;94232;94233 57646;57647;57648;57649;57650;57651;57652;57653;57654;57655;57656;57657;57658;57659;57660;57661;57662;57663;57664;57665;57666;57667;57668 57651 23 ELLTTLNLK Unmodified 1043.6227 0.62266112 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 37.001 35.632 2 1.5514E-05 17026 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 159.2 148.32 4211800000 338570000 338020000 286200000 1882600 2240900 1880900 149070000 157480000 156740000 1971600 1942600 0 168830000 161020000 183290000 543020000 556130000 629430000 166090000 179270000 186510000 1289800 0 956430 5035 1247 4908 94234;94235;94236;94237;94238;94239;94240;94241;94242;94243;94244;94245;94246;94247;94248;94249;94250;94251;94252;94253;94254;94255;94256;94257;94258 57669;57670;57671;57672;57673;57674;57675;57676;57677;57678;57679;57680;57681;57682;57683;57684;57685;57686 57680 16 ELLTTLNLKLEPADDFRDEPVK Unmodified 2555.3483 0.34828376 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 2 By matching By matching By MS/MS 1 1 1 41.823 41.946 4 1.2716E-06 14869 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 95.195 91.098 133060000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38329000 53435000 41300000 0 0 0 0 0 0 5036 1247 4909 94259;94260;94261 57687 57687 1 ELLVGFGTQVR Unmodified 1217.6768 0.67682195 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.346 37.734 2 5.9902E-06 15327 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 151.48 139.41 456610000 12366000 10646000 10634000 10185000 10934000 7306300 24933000 27034000 23395000 24926000 27814000 21069000 20915000 18237000 18518000 10178000 6606600 6071900 26761000 25799000 26286000 27901000 28171000 29929000 5037 930 4910 94262;94263;94264;94265;94266;94267;94268;94269;94270;94271;94272;94273;94274;94275;94276;94277;94278;94279;94280;94281;94282;94283;94284;94285 57688;57689;57690;57691;57692;57693;57694;57695;57696;57697;57698;57699;57700;57701;57702;57703 57691 14 ELMAQLGVTR Unmodified 1116.5961 0.59612879 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 31.442 30.173 2 3.785E-05 13491 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 141.48 126.97 377240000 0 116320000 95074000 0 0 0 0 6038700 0 0 0 0 23022000 19669000 26325000 0 0 0 28859000 29235000 32694000 0 0 0 5038 218 4911 94286;94287;94288;94289;94290;94291;94292;94293;94294 57704;57705;57706;57707;57708;57709 57709 6 ELMDNMR Unmodified 907.38917 0.38917248 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.071 19.398 2 0.00029567 7485 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.53 149.06 6405800000 454770000 417150000 368150000 2601200 2713000 2568300 498330000 507840000 463250000 8233200 6851600 6386600 560780000 473810000 490870000 3618400 2464500 2166300 751190000 672650000 699680000 3192400 3250300 3228100 5039 396 4912 94295;94296;94297;94298;94299;94300;94301;94302;94303;94304;94305;94306;94307;94308;94309;94310;94311;94312;94313;94314;94315;94316;94317;94318 57710;57711;57712;57713;57714;57715;57716;57717;57718;57719;57720;57721;57722;57723;57724;57725;57726;57727;57728;57729;57730;57731 57718 22 ELMEGNAK Unmodified 890.41677 0.41676744 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.03 12.806 2 0.0062058 3628 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 85.359 48.803 464850000 35209000 34160000 31142000 0 0 0 41120000 33112000 37533000 917170 0 0 37466000 36762000 38724000 0 0 0 46357000 48923000 43425000 0 0 0 5040 1759 4913 94319;94320;94321;94322;94323;94324;94325;94326;94327;94328;94329;94330;94331 57732;57733 57732 2 ELMNYDFTAQMENSLDQVANHEAEWK Unmodified 3112.3543 0.35425012 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.654 52.449 3 1.0757E-60 25583 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 251.44 251.44 699670000 40860000 33240000 37303000 0 0 0 46177000 42158000 43776000 0 4315800 5042100 74605000 72843000 58764000 6714300 14286000 6337800 58810000 68791000 64092000 5258400 8093800 8206900 5041 124 4914 94332;94333;94334;94335;94336;94337;94338;94339;94340;94341;94342;94343;94344;94345;94346;94347;94348;94349;94350;94351 57734;57735;57736;57737;57738;57739;57740;57741;57742;57743;57744 57738 11 ELMTISK Unmodified 820.43644 0.43644025 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 19.355 19.686 1;2 0.0059278 7067 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.602 54.536 21668000000 737700000 649370000 633580000 2261400000 1899100000 2232700000 830250000 903990000 783960000 214390000 195150000 197430000 518520000 477050000 446980000 51298000 47921000 52189000 813500000 837920000 874380000 2036100000 2021200000 1952100000 5042 133 4915 94352;94353;94354;94355;94356;94357;94358;94359;94360;94361;94362;94363;94364;94365;94366;94367;94368;94369;94370;94371;94372;94373;94374;94375;94376;94377;94378;94379;94380;94381;94382;94383;94384;94385;94386;94387;94388;94389;94390;94391;94392;94393;94394;94395;94396;94397;94398;94399 57745;57746;57747;57748;57749;57750;57751;57752;57753;57754;57755;57756;57757;57758;57759;57760;57761;57762;57763;57764;57765;57766;57767;57768;57769;57770;57771;57772;57773 57773 28 ELMTISK Oxidation (M) 836.43135 0.43135487 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 4 3 2 2 2 2 1 1 1 3 1 2 2 2 2 15.9 16.454 2 0.0051713 3190 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 105.39 73.277 471150000 10969000 5669200 0 77134000 70128000 63677000 21452000 21151000 22337000 19942000 1919700 2519400 2860000 0 0 0 0 0 21922000 8829900 12949000 37358000 38634000 31696000 5043 133 4915 94400;94401;94402;94403;94404;94405;94406;94407;94408;94409;94410;94411;94412;94413;94414;94415;94416;94417;94418;94419;94420;94421;94422;94423;94424;94425;94426;94427;94428;94429;94430;94431;94432;94433;94434;94435 57774;57775;57776;57777;57778;57779;57780;57781;57782;57783;57784;57785;57786;57787;57788;57789;57790;57791;57792;57793 57778 41 13 ELMTISKK Unmodified 948.5314 0.53140327 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.481 13.853 2 0.00052743 3574 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 140.09 101.96 3546900000 0 0 0 705760000 534960000 533070000 0 0 0 51936000 40992000 46801000 0 0 0 22832000 14032000 13813000 0 0 0 535840000 548380000 498510000 5044 133 4916 94436;94437;94438;94439;94440;94441;94442;94443;94444;94445;94446;94447 57794;57795;57796;57797;57798;57799;57800;57801;57802;57803;57804 57796 11 ELMTISKK Oxidation (M) 964.52632 0.52631789 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.025 11.513 2 0.0017886 2285 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 130.27 91.48 436880000 0 0 0 113420000 90495000 110250000 0 0 0 4650300 4715600 0 0 0 0 4184100 0 0 0 0 0 49353000 32788000 27031000 5045 133 4916 94448;94449;94450;94451;94452;94453;94454;94455;94456 57805;57806;57807;57808;57809;57810 57807 41 6 ELMVQHEER Unmodified 1169.5499 0.54990688 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 1 2 2 2 2 2 2 2 1 2 2 2 2 12.31 13.005 2;3 1.4502E-05 3079 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 178.83 155.4 1928900000 57966000 58758000 50550000 26680000 22450000 9456800 321720000 133560000 0 190480000 164070000 162170000 172410000 163060000 76133000 0 0 0 105750000 46720000 106950000 14961000 28870000 16174000 5046 664 4917 94457;94458;94459;94460;94461;94462;94463;94464;94465;94466;94467;94468;94469;94470;94471;94472;94473;94474;94475;94476;94477;94478;94479;94480;94481;94482;94483;94484;94485;94486;94487;94488;94489;94490;94491;94492;94493;94494;94495 57811;57812;57813;57814;57815;57816;57817;57818;57819;57820;57821;57822;57823;57824;57825;57826;57827;57828;57829;57830;57831;57832;57833;57834;57835;57836;57837 57816 21 ELMVQHEER Oxidation (M) 1185.5448 0.5448215 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 11.084 12.006 2 0.0002571 3020 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 126.41 114.46 75069000 0 0 0 0 822880 1142000 21365000 15342000 17318000 0 0 0 7276900 7422100 0 0 0 0 4379500 0 0 0 0 0 5047 664 4917 94496;94497;94498;94499;94500;94501;94502;94503 57838;57839;57840;57841 57839 363 4 ELMYWNLDNTAR Unmodified 1524.7031 0.70311306 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.478 41.963 2 9.2567E-05 20434 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 96.342 74.878 118190000 14929000 14419000 14914000 0 0 0 8692400 9898700 9778200 0 0 0 6302800 7015000 4657900 0 0 0 9917800 7991500 9673700 0 0 0 5048 1006 4918 94504;94505;94506;94507;94508;94509;94510;94511;94512;94513;94514;94515 57842;57843;57844;57845 57844 2 ELNADDVVFSFDR Unmodified 1525.7049 0.7048872 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 48.704 47.387 2;3 5.7975E-50 23065 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 294.61 294.61 2931600000 1018600000 975490000 819980000 4013000 4155100 3841100 33612000 35499000 0 0 0 0 12653000 12587000 11152000 0 0 0 0 0 0 0 0 0 5049 1219 4919 94516;94517;94518;94519;94520;94521;94522;94523;94524;94525;94526;94527;94528;94529;94530;94531;94532;94533 57846;57847;57848;57849;57850;57851;57852;57853;57854;57855;57856;57857;57858;57859;57860 57854 15 ELNAQTWFAGLR Unmodified 1404.715 0.71499837 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.592 47.353 2 3.8974E-17 22856 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 264.3 226.21 775210000 57233000 61879000 56852000 2385600 1307600 1473200 65943000 64762000 63919000 4791000 0 4297100 51550000 49407000 49964000 3890300 2057600 0 70597000 83193000 77172000 0 0 2541000 5050 1144 4920 94534;94535;94536;94537;94538;94539;94540;94541;94542;94543;94544;94545;94546;94547;94548;94549;94550;94551;94552;94553 57861;57862;57863;57864;57865;57866;57867;57868;57869;57870;57871;57872;57873 57867 13 ELNATHWICLHDITANVVTK Unmodified 2334.1791 0.17905036 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 1 41.228 39.427 3;4 2.3942E-07 15641 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 105.92 97.928 322600000 4174500 2592900 0 0 0 0 27633000 28522000 30499000 12887000 12453000 11827000 20346000 19713000 21533000 0 1403600 2905900 33817000 33423000 40682000 7203200 6496800 4488000 5051 1494 4921 94554;94555;94556;94557;94558;94559;94560;94561;94562;94563;94564;94565;94566;94567;94568;94569;94570;94571;94572;94573;94574;94575;94576;94577;94578;94579;94580;94581;94582;94583;94584;94585 57874;57875;57876;57877;57878;57879 57877 6 ELNEQLEENLGYK Unmodified 1577.7573 0.7573167 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.094 31.655 2 2.4487E-40 14877 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 285.28 275.96 1248000000 195260000 180560000 177630000 0 0 0 95727000 94442000 86922000 0 0 0 62569000 63510000 56988000 0 0 0 72528000 79131000 82767000 0 0 0 5052 43 4922 94586;94587;94588;94589;94590;94591;94592;94593;94594;94595;94596;94597 57880;57881;57882;57883;57884;57885;57886;57887;57888;57889;57890;57891 57888 12 ELNICTGCGPGAMEAPMK Unmodified 1934.8359 0.83585984 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.08 33.623 2;3 2.5151E-22 15371 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 191.06 191.06 517460000 45950000 43693000 38225000 0 0 0 52503000 51704000 40855000 0 0 0 40810000 34051000 42682000 0 0 0 42476000 44647000 39868000 0 0 0 5053 801 4923 94598;94599;94600;94601;94602;94603;94604;94605;94606;94607;94608;94609;94610;94611;94612;94613;94614;94615;94616;94617;94618;94619;94620;94621 57892;57893;57894;57895;57896;57897;57898;57899;57900;57901;57902;57903;57904;57905 57904 14 ELNKPVIVHTR Unmodified 1304.7565 0.75646926 960 P0AFQ7 ycfH Uncharacterized deoxyribonuclease YcfH yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 12.37 13.203 2;3 0.0012506 3859 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 69.451 66.11 275090000 39573000 20763000 48084000 0 0 0 16520000 12130000 16653000 0 0 0 18581000 19409000 13373000 0 0 0 24677000 23723000 21609000 0 0 0 5054 960 4924 94622;94623;94624;94625;94626;94627;94628;94629;94630;94631;94632;94633;94634;94635;94636;94637;94638;94639;94640;94641;94642 57906;57907;57908;57909;57910;57911 57908 6 ELNLAADEMLR Unmodified 1273.6336 0.63363651 1499 P37767 yfhH Uncharacterized HTH-type transcriptional regulator YfhH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 37.484 37.606 2 0.0001186 12868 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 116.3 65.698 15157000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6628400 3912900 4615900 0 0 0 0 0 0 5055 1499 4925 94643;94644;94645 57912;57913;57914 57913 3 ELNLADSSLSEEALIQAMVDNPK Unmodified 2486.221 0.22103433 1874 P76569 yfgD Uncharacterized protein YfgD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 54.864 53.4 2;3 3.4544E-64 25464 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 291.06 271.39 760660000 61287000 60386000 52443000 0 0 0 57484000 43741000 52024000 0 0 0 78762000 71988000 75831000 0 0 0 65386000 71213000 70118000 0 0 0 5056 1874 4926 94646;94647;94648;94649;94650;94651;94652;94653;94654;94655;94656;94657;94658;94659;94660;94661;94662;94663;94664;94665;94666;94667;94668;94669 57915;57916;57917;57918 57917 4 ELNMGVLEK Unmodified 1031.5321 0.53213155 322 P0A7A2 gpmB Probable phosphoglycerate mutase GpmB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.91 28.553 2 0.00026541 13571 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.87 97.826 348130000 30255000 24640000 32310000 0 0 0 25214000 24414000 25192000 0 0 0 21254000 25093000 23719000 0 0 0 38056000 37423000 40558000 0 0 0 5057 322 4927 94670;94671;94672;94673;94674;94675;94676;94677;94678;94679;94680;94681 57919;57920;57921;57922;57923;57924;57925;57926;57927 57921 9 ELNPAGR Unmodified 755.3926 0.3926016 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.588 12.413 2 0.0041011 3349 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.22 84.357 536600000 117620000 101780000 93457000 0 0 0 0 36907000 30363000 0 0 0 0 34877000 32623000 0 0 0 43161000 0 45816000 0 0 0 5058 1455 4928 94682;94683;94684;94685;94686;94687;94688;94689;94690;94691;94692;94693 57928;57929;57930;57931;57932;57933;57934;57935;57936;57937;57938 57933 11 ELNQAADNLACSLR Unmodified 1573.7519 0.75185416 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 32.085 30.597 2 1.5597E-26 14407 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 236.69 224.46 107730000 0 0 0 0 0 0 10354000 9245400 6065900 0 0 0 14262000 0 0 0 0 0 26485000 19744000 21578000 0 0 0 5059 1055 4929 94694;94695;94696;94697;94698;94699;94700 57939;57940;57941 57940 3 ELNVYLR Unmodified 905.49707 0.49706667 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 2 1 27.712 26.457 2 0.0012057 9777 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 134.12 105.25 4369800000 10806000 12439000 11053000 881650 0 0 122110000 120320000 113390000 30849000 26322000 24935000 42830000 36683000 34946000 1317700000 1104100000 1222900000 77617000 21725000 21982000 6727100 6351900 3053100 5060 1089 4930 94701;94702;94703;94704;94705;94706;94707;94708;94709;94710;94711;94712;94713;94714;94715;94716;94717;94718;94719;94720;94721;94722;94723;94724;94725;94726;94727;94728 57942;57943;57944;57945;57946;57947;57948;57949;57950;57951;57952;57953;57954;57955;57956;57957;57958;57959;57960;57961;57962;57963;57964 57950 23 ELPAALAPMAK Unmodified 1110.6107 0.61071622 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.737 32.255 2 0.022073 12785 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 57.96 57.96 137580000 11297000 9287100 8534400 0 0 0 9671100 7878000 10066000 5203600 5339300 3891900 8129400 6830600 5208100 0 828210 1111400 13689000 12217000 14533000 0 2193200 1669600 5061 1417 4931 94729;94730;94731;94732;94733;94734;94735;94736;94737;94738;94739;94740;94741;94742;94743;94744;94745;94746;94747 57965;57966;57967;57968;57969;57970;57971;57972;57973;57974;57975;57976;57977;57978 57965 11 ELPAFIIK Unmodified 929.5586 0.5586043 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.436 39.692 2 0.034041 19356 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.148 51.426 2631500000 119260000 121540000 105500000 1180700 1398300 0 241330000 213530000 205170000 2079300 1942800 0 217160000 200680000 190800000 0 1110000 0 336990000 330610000 334810000 2277100 2077900 2042800 5062 1491 4932 94748;94749;94750;94751;94752;94753;94754;94755;94756;94757;94758;94759;94760;94761;94762;94763;94764;94765;94766;94767 57979;57980;57981;57982;57983;57984;57985;57986;57987;57988;57989;57990;57991;57992;57993 57988 15 ELPELTAEFIK Unmodified 1288.6915 0.69146896 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 1 1 1 1 1 2 2 2 2 1 1 1 1 47.016 45.53 2;3 6.8688E-05 22236 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.83 121.36 8467400000 879370000 815770000 752450000 7020000 6417200 5849300 706650000 2797000 582720000 19884000 22520000 20865000 908820000 816540000 819360000 0 0 0 0 1011400000 1053500000 11787000 12349000 11256000 5063 396 4933 94768;94769;94770;94771;94772;94773;94774;94775;94776;94777;94778;94779;94780;94781;94782;94783;94784;94785;94786;94787;94788;94789;94790;94791;94792;94793;94794 57994;57995;57996;57997;57998;57999;58000;58001;58002;58003;58004;58005;58006;58007;58008;58009;58010;58011;58012;58013;58014;58015;58016 58008 20 ELPELTAEFIKR Unmodified 1444.7926 0.79257999 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 39.237 37.137 3 1.1144E-06 13032 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 142.07 136.58 141040000 0 0 0 10755000 9653400 14508000 0 0 0 28075000 29066000 21902000 0 0 0 0 0 0 0 0 0 0 13704000 13379000 5064 396 4934 94795;94796;94797;94798;94799;94800;94801;94802 58017;58018;58019;58020 58019 2 ELPGLIADGR Unmodified 1039.5662 0.56620887 247 P0A6I0 cmk Cytidylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.23 31.046 2 0.00020435 14501 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 120.87 86.865 848690000 57509000 62641000 61769000 0 0 0 62204000 66701000 65315000 0 0 0 70257000 61415000 63515000 2133300 0 1859200 94775000 84682000 92785000 0 0 1125700 5065 247 4935 94803;94804;94805;94806;94807;94808;94809;94810;94811;94812;94813;94814;94815;94816;94817 58021;58022;58023;58024;58025;58026;58027;58028;58029;58030;58031;58032 58026 12 ELPLTESLALTIDR Unmodified 1569.8614 0.86138784 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 2 2 3 2 3 3 3 3 52.077 50.83 2;3 6.2616E-08 23714 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 158.05 142.51 11948000000 1556000000 1708600000 1509100000 2524100 2932900 2834300 941380000 841450000 889640000 0 0 0 609400000 565370000 497840000 0 0 0 940470000 902680000 977640000 0 0 0 5066 1652 4936 94818;94819;94820;94821;94822;94823;94824;94825;94826;94827;94828;94829;94830;94831;94832;94833;94834;94835;94836;94837;94838;94839;94840;94841;94842;94843;94844;94845;94846;94847;94848;94849;94850;94851;94852;94853 58033;58034;58035;58036;58037;58038;58039;58040;58041;58042;58043;58044;58045;58046;58047;58048;58049;58050;58051;58052;58053;58054;58055;58056;58057;58058 58055 22 ELPPEERPAAGAVINEAK Unmodified 1889.9847 0.98469087 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 3 2 2 2 2 2 3 3 2 1 23.302 22.551 2;3 3.2903E-13 9179 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 162.93 140.87 1001700000 88946000 92852000 86638000 1529700 954640 0 63878000 53840000 67459000 0 0 0 93564000 73715000 85987000 0 0 0 97574000 98885000 95173000 0 0 723890 5067 183 4937 94854;94855;94856;94857;94858;94859;94860;94861;94862;94863;94864;94865;94866;94867;94868;94869;94870;94871;94872;94873;94874;94875;94876;94877;94878;94879;94880;94881;94882;94883 58059;58060;58061;58062;58063;58064;58065;58066;58067;58068;58069;58070;58071;58072;58073;58074;58075;58076;58077;58078;58079;58080;58081;58082;58083;58084;58085;58086;58087;58088;58089;58090;58091;58092;58093;58094;58095;58096;58097;58098;58099 58095 41 ELPQYIK Unmodified 889.49092 0.49091866 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 23.274 22.374 2 0.011921 9732 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 85.306 49.121 138080000 0 0 0 0 0 0 64480000 0 73596000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5068 1097 4938 94884;94885;94886;94887 58100;58101;58102;58103 58101 4 ELPTPASQTPEALR Unmodified 1508.7835 0.78347187 1567 P45425 nanK N-acetylmannosamine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.623 27.421 2 7.6545E-11 12661 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.33 154.1 99812000 17467000 15517000 13678000 0 0 0 6419000 0 5025100 0 0 0 8143400 7122500 6748100 0 0 0 5886100 7721800 6084100 0 0 0 5069 1567 4939 94888;94889;94890;94891;94892;94893;94894;94895;94896;94897;94898 58104;58105;58106;58107;58108;58109;58110 58105 7 ELPVPVIGR Unmodified 978.58622 0.58621603 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.1 35.426 2 0.050589 17182 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.782 48.795 157630000 15980000 14044000 12833000 0 0 0 14396000 15704000 12901000 0 0 0 10776000 11271000 12538000 0 0 0 11973000 12217000 12998000 0 0 0 5070 389 4940 94899;94900;94901;94902;94903;94904;94905;94906;94907;94908;94909;94910 58111;58112;58113;58114 58114 1 ELPVVWGVAK Unmodified 1096.6281 0.62808085 1584 P46125 yedI Inner membrane protein YedI yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 41.339 39.544 2 0.021071 19320 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.59 56.655 59801000 5002800 3009400 4602000 0 0 0 6833800 7672400 0 2064700 1717900 0 3698300 3464300 3666400 0 0 0 6104300 5583600 6380600 0 0 0 5071 1584 4941 94911;94912;94913;94914;94915;94916;94917;94918;94919;94920;94921;94922;94923 58115;58116;58117 58115 3 ELPYMNFPK Unmodified 1137.5529 0.55286699 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.025 38.358 2 0.00062659 18407 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.39 90.615 1104300000 65286000 65606000 60586000 0 0 0 92083000 86321000 92502000 0 0 0 113700000 108060000 101730000 0 0 0 101090000 108880000 108420000 0 0 0 5072 192 4942 94924;94925;94926;94927;94928;94929;94930;94931;94932;94933;94934;94935 58118;58119;58120;58121;58122;58123;58124;58125;58126;58127;58128;58129 58126 12 ELQDIGVR Unmodified 928.49779 0.49779495 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 20.866 20.843 2 0.0031669 6906 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.401 38.798 75816000 19063000 19845000 16842000 0 0 0 0 0 0 6788100 5781400 7497000 0 0 0 0 0 0 0 0 0 0 0 0 5073 1197 4943 94936;94937;94938;94939;94940;94941 58130 58130 1 ELQDTLEAAGDK Unmodified 1288.6147 0.61467521 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.599 22.878 2 7.2713E-07 9978 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 153.12 59.957 192090000 15231000 15534000 16288000 0 0 0 14283000 10484000 10955000 0 0 0 14683000 16402000 13355000 0 0 0 16697000 24236000 23940000 0 0 0 5074 1617 4944 94942;94943;94944;94945;94946;94947;94948;94949;94950;94951;94952;94953 58131;58132;58133;58134;58135 58131 2 ELQEEVGITPQHFSLFEK Unmodified 2130.0633 0.063335123 185 P08337 mutT 8-oxo-dGTP diphosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.197 41.682 3 3.6765E-05 20154 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 59.585 51.398 119120000 7964300 6990600 4677300 0 0 0 10647000 8103600 7026300 0 0 0 10686000 11418000 8583200 0 0 0 14553000 15863000 12605000 0 0 0 5075 185 4945 94954;94955;94956;94957;94958;94959;94960;94961;94962;94963;94964;94965 58136;58137;58138;58139;58140 58138 5 ELQLVYNK Unmodified 1005.5495 0.54949617 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.757 24.597 2 0.00045063 8891 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 138.37 117.67 1111200000 26906000 23583000 20197000 0 0 0 118560000 116140000 112990000 23539000 27936000 30732000 0 109130000 91650000 0 7266000 0 130670000 123690000 127180000 0 0 21013000 5076 644 4946 94966;94967;94968;94969;94970;94971;94972;94973;94974;94975;94976;94977;94978;94979;94980;94981;94982 58141;58142;58143;58144;58145;58146;58147 58144 7 ELQQQDAESPLIIDEGR Unmodified 1939.9487 0.9486993 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.458 33.864 2 3.6946E-24 16195 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 208.82 200.07 101710000 15503000 13090000 11921000 0 0 0 7366600 7522400 8554000 0 0 2032900 4558400 0 7011000 0 0 0 8373800 7009400 8768000 0 0 0 5077 1728 4947 94983;94984;94985;94986;94987;94988;94989;94990;94991;94992;94993;94994 58148;58149;58150;58151 58151 4 ELQSAFGWR Unmodified 1092.5352 0.53524309 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.88 33.368 2 0.00039777 16268 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 111.29 61.929 58767000 0 0 0 1611400 1290900 1161300 0 10816000 9800400 0 0 0 8030900 8161700 7151200 0 0 0 0 10744000 0 0 0 0 5078 1259 4948 94995;94996;94997;94998;94999;95000;95001;95002;95003 58152 58152 1 ELQTIPK Unmodified 827.47527 0.4752686 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 2 2 1 1 1 1 2 2 2 1 1 1 2 2 1 1 1 15.684 16.326 2 0.025379 5175 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 71.715 32.896 3760500000 190080000 163290000 154640000 1337600 986440 1378800 509640000 500620000 505500000 2479000 1464700 2587100 360760000 328260000 286030000 2036700 1385400 0 239080000 254060000 246970000 2941000 2438700 2557200 5079 697 4949 95004;95005;95006;95007;95008;95009;95010;95011;95012;95013;95014;95015;95016;95017;95018;95019;95020;95021;95022;95023;95024;95025;95026;95027;95028;95029;95030;95031;95032;95033;95034 58153;58154;58155;58156;58157;58158;58159;58160;58161;58162;58163;58164 58164 12 ELSAEGFNFIGTGVSGGEEGALK Unmodified 2268.091 0.091006437 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 49.604 48.215 2;3 3.7719E-53 23885 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 254.56 249.48 5820400000 313070000 276180000 257960000 0 0 0 588430000 512280000 481980000 0 0 0 564000000 512270000 531520000 0 0 0 615020000 592670000 575050000 0 0 0 5080 24 4950 95035;95036;95037;95038;95039;95040;95041;95042;95043;95044;95045;95046;95047;95048;95049;95050;95051;95052;95053;95054;95055;95056;95057;95058 58165;58166;58167;58168;58169;58170;58171;58172;58173;58174;58175;58176;58177;58178;58179;58180;58181;58182;58183;58184;58185;58186;58187;58188;58189;58190;58191;58192;58193 58165 29 ELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQK Unmodified 3220.571 0.57104284 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 48.95 47.613 3 1.0718E-43 23448 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 214.92 212.93 611700000 30352000 26725000 26034000 0 0 2343200 66510000 55436000 63860000 0 0 0 45907000 35533000 39978000 0 0 0 73980000 80199000 64839000 0 0 0 5081 24 4951 95059;95060;95061;95062;95063;95064;95065;95066;95067;95068;95069;95070;95071 58194;58195;58196;58197;58198;58199;58200;58201;58202;58203;58204;58205 58196 12 ELSALVNR Unmodified 900.50288 0.50288033 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1 1 2 1 1 1 1 1 21.674 21.709 2 0.0017297 8391 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 106.42 61.694 873480000 104860000 97887000 74580000 0 0 0 16031000 161260000 20191000 0 0 0 66547000 59268000 64002000 0 0 489730 72433000 71858000 63445000 0 628430 0 5082 145 4952 95072;95073;95074;95075;95076;95077;95078;95079;95080;95081;95082;95083;95084;95085;95086;95087 58206;58207;58208;58209;58210;58211 58211 5 ELSAWMAGAVR Unmodified 1189.5914 0.59137776 1385 P32099 lplA Lipoate-protein ligase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.878 36.198 2 0.00030805 16937 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 90.657 66.502 115620000 6269000 7206400 6342500 0 157160 0 9754700 8048400 8459700 0 0 0 12941000 11686000 10719000 0 0 0 10968000 10405000 12666000 0 0 0 5083 1385 4953 95088;95089;95090;95091;95092;95093;95094;95095;95096;95097;95098;95099;95100 58212;58213 58212 2 ELSDDLCSLR Unmodified 1206.5551 0.55505184 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 31.342 30.105 2 0.00053204 14042 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.948 89.727 656140000 83668000 83772000 75701000 0 1241800 0 0 0 0 0 0 0 45637000 55793000 53090000 0 0 0 92426000 84880000 79933000 0 0 0 5084 1348 4954 95101;95102;95103;95104;95105;95106;95107;95108;95109;95110 58214;58215;58216;58217;58218;58219;58220 58219 3 ELSEHLMLVDLAR Unmodified 1524.797 0.79701344 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 41.07 39.631 2;3 6.2255E-07 19145 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143.73 140.73 195360000 64721000 65407000 65234000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5085 46 4955 95111;95112;95113;95114;95115;95116 58221;58222;58223;58224;58225 58225 5 ELSELIGVTR Unmodified 1115.6186 0.61863837 464 P0A8V6 fadR Fatty acid metabolism regulator protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.915 34.155 2 4.6196E-13 16322 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 176.6 117.62 200990000 18714000 15872000 0 0 843520 827450 20708000 15476000 14538000 5883900 0 5450100 12624000 10106000 11845000 0 0 0 21874000 19905000 20508000 2799000 3018300 0 5086 464 4956 95117;95118;95119;95120;95121;95122;95123;95124;95125;95126;95127;95128;95129;95130;95131;95132;95133;95134 58226;58227;58228;58229;58230;58231;58232;58233;58234 58232 9 ELSEQELAWK Unmodified 1231.6085 0.60846762 1883 P77181 paaY Phenylacetic acid degradation protein PaaY yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 31.177 30.025 2 0.0018633 14031 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.7 79.71 70520000 15798000 15986000 10378000 0 0 0 0 0 0 0 0 0 5041200 5644900 5896000 0 0 0 0 0 11776000 0 0 0 5087 1883 4957 95135;95136;95137;95138;95139;95140;95141 58235 58235 1 ELSFLNSGVSIR Unmodified 1320.7038 0.70376498 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.919 41.358 2 7.3889E-17 16583 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 211.27 173.71 1739700000 133250000 121500000 118700000 3742600 3214500 3141500 139020000 132300000 120010000 19567000 17270000 17438000 131220000 111230000 119010000 7388000 4970500 5681900 169520000 166750000 171330000 8591700 8761000 6110800 5088 883 4958 95142;95143;95144;95145;95146;95147;95148;95149;95150;95151;95152;95153;95154;95155;95156;95157;95158;95159;95160;95161;95162;95163;95164;95165 58236;58237;58238;58239;58240;58241;58242;58243;58244;58245;58246;58247;58248;58249;58250;58251;58252;58253;58254;58255 58238 20 ELSHFANGFLIGSALMAHDDLHAAVR Unmodified 2791.3864 0.38641737 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By matching 1 1 45.42 44.091 5 0.12019 21626 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 28.434 25.961 19066000 8579800 10486000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5089 49 4959 95166;95167 58256 58256 0 ELSHFGLHEFCNIQTVWK Unmodified 2244.0786 0.078608032 1825 P76149 sad Succinate semialdehyde dehydrogenase [NAD(P)+] Sad yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 41.085 39.401 4 0.10965 19191 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 26.307 25.977 133690000 27833000 26600000 23191000 0 0 0 8809200 9699300 12708000 0 0 0 0 3541300 3822000 0 0 0 5774100 5331400 6379200 0 0 0 5090 1825 4960 95168;95169;95170;95171;95172;95173;95174;95175;95176;95177;95178 58257 58257 1 ELSHKLDHEPSAEEIAEQLDKPVDDVSR Unmodified 3185.5477 0.54766486 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 2 5 4 4 1 2 2 32.349 31.337 3;4;5;6 1.6764E-80 10981 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 285.61 277.79 5395200000 0 0 0 662630 0 0 0 0 0 53803000 45725000 51504000 0 0 0 1973000000 1431800000 1820300000 0 0 0 4496200 6014600 7908600 5091 1089 4961 95179;95180;95181;95182;95183;95184;95185;95186;95187;95188;95189;95190;95191;95192;95193;95194;95195;95196;95197;95198;95199;95200;95201;95202;95203 58258;58259;58260;58261;58262;58263;58264;58265;58266;58267;58268;58269;58270;58271;58272;58273;58274;58275 58260 17 ELSINDEVIK Unmodified 1158.6132 0.61321864 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.696 29.301 2 0.00029946 10311 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 134.48 75.663 919770000 82181000 86246000 88015000 3245900 3492700 3574400 77734000 97908000 72604000 3548000 2675300 3969400 52956000 53537000 46370000 19110000 12233000 13218000 59610000 65586000 66249000 1840500 2096200 1768800 5092 1214 4962 95204;95205;95206;95207;95208;95209;95210;95211;95212;95213;95214;95215;95216;95217;95218;95219;95220;95221;95222;95223;95224;95225;95226;95227 58276;58277;58278;58279;58280;58281;58282;58283;58284;58285;58286 58276 11 ELSLEEIEEIR Unmodified 1358.6929 0.69292553 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.292 43.872 2 3.5151E-06 21352 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 182.39 174.47 523940000 32597000 33993000 26363000 0 0 0 52885000 41437000 47450000 0 0 0 41931000 43149000 34159000 0 0 0 57903000 58058000 54012000 0 0 0 5093 1856 4963 95228;95229;95230;95231;95232;95233;95234;95235;95236;95237;95238;95239 58287;58288;58289;58290;58291 58288 4 ELSQGTYLGHITR Unmodified 1473.7576 0.75759147 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 2 1 2 2 2 2 1 1 2 2 2 22.901 22.328 2;3 1.0213E-05 9177 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 131.82 103.09 323030000 30114000 45405000 40846000 0 0 0 23054000 19832000 26226000 0 0 0 22827000 18306000 21253000 0 0 0 25211000 25377000 24581000 0 0 0 5094 1399 4964 95240;95241;95242;95243;95244;95245;95246;95247;95248;95249;95250;95251;95252;95253;95254;95255;95256;95257;95258;95259 58292;58293;58294;58295;58296;58297 58297 6 ELSQQYQQLDDEYLQAR Unmodified 2125.9916 0.99162674 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 38.754 36.872 2;3 1.7332E-75 18321 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 332.96 327.78 973430000 31294000 24154000 24040000 0 0 0 100690000 97678000 90678000 10428000 10592000 11580000 91567000 77776000 82332000 0 0 0 107620000 112830000 89965000 3787700 3342800 3066600 5095 1468 4965 95260;95261;95262;95263;95264;95265;95266;95267;95268;95269;95270;95271;95272;95273;95274;95275;95276;95277;95278;95279;95280;95281;95282;95283;95284;95285;95286;95287;95288;95289;95290;95291;95292;95293;95294;95295 58298;58299;58300;58301;58302;58303;58304;58305;58306;58307;58308;58309;58310;58311;58312;58313;58314;58315;58316;58317;58318;58319;58320;58321 58305 22 ELSTLDTQN Unmodified 1019.4771 0.47711909 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.899 22.159 2 0.0042734 9459 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 78.616 75.044 1111600000 0 0 0 0 0 0 133750000 131590000 117270000 15131000 16987000 12472000 154830000 138480000 152710000 0 0 0 79170000 82006000 77177000 0 0 0 5096 501 4966 95296;95297;95298;95299;95300;95301;95302;95303;95304;95305;95306;95307 58322;58323;58324;58325;58326;58327;58328;58329;58330 58327 9 ELSWLSFNER Unmodified 1279.6197 0.619701 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 47.002 45.265 2 0.053916 16218 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 53.756 53.756 45030000 13386000 0 0 0 1192600 1637700 6898000 4921200 6991900 2348300 2539100 1457000 0 0 0 0 0 0 3658200 0 0 0 0 0 5097 326 4967 95308;95309;95310;95311;95312;95313;95314;95315;95316;95317 58331 58331 0 ELTGGIYFGQPK Unmodified 1308.6714 0.67140222 1336 P30125 leuB 3-isopropylmalate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 35.093 33.641 2 2.5732E-05 16126 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.33 114.63 113720000 26296000 30022000 29678000 0 0 0 3103800 3325100 5066300 0 0 0 3681600 3513000 4771800 0 0 0 0 0 4264300 0 0 0 5098 1336 4968 95318;95319;95320;95321;95322;95323;95324;95325;95326;95327 58332;58333;58334;58335 58332 3 ELTLLPLNIK Unmodified 1152.7118 0.71181048 1611 P54901 csiE Stationary phase-inducible protein CsiE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.403 48.998 2 0.00070562 19643 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 110.12 110.12 151120000 8044300 5615000 7395700 1118000 1463100 1065700 11983000 14027000 13742000 10254000 8705600 10176000 7757700 6578300 6980900 0 0 0 9934000 10540000 9701900 2110900 1853200 2072700 5099 1611 4969 95328;95329;95330;95331;95332;95333;95334;95335;95336;95337;95338;95339;95340;95341;95342;95343;95344;95345;95346;95347;95348 58336;58337;58338;58339;58340;58341;58342;58343 58337 7 ELTLWESR Unmodified 1032.524 0.52400971 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.963 33.66 2 2.9843E-06 16349 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 181.81 115.01 3796400000 199490000 203250000 175740000 0 0 0 261810000 272800000 264990000 0 0 0 251940000 249490000 263320000 352930000 225490000 242560000 272470000 276540000 279010000 1053300 2079100 1447000 5100 712 4970 95349;95350;95351;95352;95353;95354;95355;95356;95357;95358;95359;95360;95361;95362;95363;95364;95365;95366 58344;58345;58346;58347;58348;58349;58350;58351;58352;58353;58354;58355;58356;58357;58358;58359;58360 58349 17 ELTNHSLPEIGDAFGGR Unmodified 1811.8802 0.8802258 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 36.494 34.661 3 6.3749E-05 13956 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 58.246 54.075 57640000 7777900 8226200 6080000 0 0 0 0 7808900 0 3491200 2961700 2845700 0 0 0 0 0 0 7066000 6418700 4964200 0 0 0 5101 78 4971 95367;95368;95369;95370;95371;95372;95373;95374;95375;95376 58361 58361 1 ELTPAAVTGTLTTPVGR Unmodified 1682.9203 0.9202997 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 40.33 38.659 2;3 1.1802E-19 18635 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 244.18 220.81 3155000000 484500000 467290000 431000000 0 407040 870210 234510000 232740000 246720000 0 0 0 148050000 154590000 136730000 0 0 0 213000000 212270000 192300000 0 0 0 5102 549 4972 95377;95378;95379;95380;95381;95382;95383;95384;95385;95386;95387;95388;95389;95390;95391;95392;95393;95394;95395;95396;95397;95398;95399;95400;95401;95402 58362;58363;58364;58365;58366;58367;58368;58369;58370;58371;58372;58373;58374;58375;58376;58377;58378;58379;58380;58381 58372 20 ELTQPDDVR Unmodified 1071.5197 0.51965261 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.709 15.474 2 7.2897E-05 5246 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143.12 135.45 408140000 33499000 31689000 30725000 0 0 0 66130000 62319000 62463000 0 0 0 24042000 16790000 13502000 0 0 0 22777000 23886000 20315000 0 0 0 5103 145 4973 95403;95404;95405;95406;95407;95408;95409;95410;95411;95412;95413;95414 58382;58383;58384;58385;58386;58387;58388;58389;58390;58391;58392;58393 58382 12 ELTQPDDVRK Unmodified 1199.6146 0.61461563 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.777 12.609 2 1.6003E-05 3450 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 152.79 111.77 265150000 22394000 24958000 19862000 0 0 0 44941000 38445000 39775000 0 0 0 13864000 15186000 9257800 0 0 0 15264000 11155000 10053000 0 0 0 5104 145 4974 95415;95416;95417;95418;95419;95420;95421;95422;95423;95424;95425;95426 58394;58395;58396 58394 3 ELTSLLK Unmodified 802.48002 0.48001963 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 27.769 27.277 2 0.030014 12434 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.035 33.296 75980000 25149000 25315000 23243000 0 0 0 0 0 0 0 0 0 0 0 0 883880 743520 645520 0 0 0 0 0 0 5105 841 4975 95427;95428;95429;95430;95431;95432 58397;58398;58399 58397 3 ELTTEIDNNIEQISSYK Unmodified 1995.9637 0.96368066 13 CON__P13645 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.12 41.963 2 3.1778E-19 16550 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 229.97 224.65 40122000 0 0 0 0 0 2384200 0 0 0 3862400 5002400 2917700 0 0 0 0 0 0 0 0 0 8009500 9321500 8624600 + 5106 13 4976 95433;95434;95435;95436;95437;95438;95439 58400;58401;58402;58403;58404 58403 5 ELTTVMSNSFGFGGTNATLVMR Unmodified 2332.1192 0.11915222 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.424 51.176 2;3 5.3562E-103 25155 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 357.39 350.51 1465500000 216930000 181270000 170780000 0 0 0 86174000 85596000 78457000 0 0 0 96137000 92260000 113510000 0 0 0 119430000 116760000 108230000 0 0 0 5107 489 4977 95440;95441;95442;95443;95444;95445;95446;95447;95448;95449;95450;95451;95452;95453;95454;95455;95456;95457;95458;95459;95460;95461;95462;95463 58405;58406;58407;58408;58409;58410;58411;58412;58413;58414;58415;58416;58417;58418;58419;58420;58421;58422;58423;58424;58425;58426;58427 58416 23 ELTVQATTGTNSESDLSSIQDEIK Unmodified 2565.2294 0.22935041 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching 2 1 1 2 1 41.059 39.49 2;3 6.8631E-15 19392 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.58 172.79 54200000 33426000 3036500 11083000 0 3671600 2982200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5108 96 4978 95464;95465;95466;95467;95468;95469;95470 58428;58429 58429 2 ELVADDATNTVYISGIGK Unmodified 1864.9418 0.941823 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 2 1 2 1 2 1 1 1 1 1 1 2 1 1 1 40.786 39.111 2 2.6209E-36 19234 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 293.76 272.98 1255200000 74929000 72676000 65209000 4418800 3531100 3505900 49827000 52533000 47935000 9301700 6688400 8670200 99343000 85743000 85551000 10932000 8316900 6399700 175860000 160630000 159180000 20850000 21224000 21937000 5109 1819 4979 95471;95472;95473;95474;95475;95476;95477;95478;95479;95480;95481;95482;95483;95484;95485;95486;95487;95488;95489;95490;95491;95492;95493;95494;95495;95496;95497;95498;95499 58430;58431;58432;58433;58434;58435;58436;58437;58438;58439;58440;58441;58442;58443;58444;58445;58446;58447;58448;58449;58450;58451;58452;58453 58435 24 ELVASGFNR Unmodified 991.50869 0.50869399 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.741 21.785 2 4.4627E-11 8731 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 203.57 191.38 1560500000 294250000 294690000 227120000 0 632130 714610 67181000 63035000 66111000 0 0 0 69695000 65828000 60750000 0 0 0 125480000 114320000 110730000 0 0 0 5110 104 4980 95500;95501;95502;95503;95504;95505;95506;95507;95508;95509;95510;95511;95512;95513 58454;58455;58456;58457;58458;58459;58460;58461;58462;58463;58464;58465 58462 12 ELVASLSER Unmodified 1002.5346 0.53457439 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.428 22.684 2 3.1513E-05 7187 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 153.78 130.76 857670000 152590000 152190000 129960000 23361000 27641000 25920000 106040000 96153000 104090000 7224900 9153400 6102200 1030400 0 0 1733500 1678400 2006100 0 0 0 3302200 3063900 4437200 5111 613 4981 95514;95515;95516;95517;95518;95519;95520;95521;95522;95523;95524;95525;95526;95527;95528;95529;95530;95531;95532;95533 58466;58467;58468;58469;58470;58471;58472 58469 6 ELVATLTELCER Unmodified 1432.7232 0.7231798 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 41.536 39.652 2 6.3266E-31 14008 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 262.63 254.41 100570000 0 0 0 25902000 24237000 28637000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6360200 9696600 5741800 5112 1904 4982 95534;95535;95536;95537;95538;95539 58473;58474;58475;58476;58477 58476 4 ELVEFAGK Unmodified 891.47018 0.47018322 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.983 23.969 2 0.0069737 10610 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.097 52.808 1087600000 138440000 141150000 142400000 9297900 9484700 9458300 139650000 148530000 145860000 9352500 7628000 7442900 27345000 21917000 20536000 1230500 0 772900 35970000 38022000 33112000 0 0 0 5113 147 4983 95540;95541;95542;95543;95544;95545;95546;95547;95548;95549;95550;95551;95552;95553;95554;95555;95556;95557;95558;95559 58478;58479;58480;58481;58482;58483;58484;58485;58486;58487;58488;58489 58486 12 ELVELFFEEIR Unmodified 1422.7395 0.73948179 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.235 53.923 2 9.5658E-06 21585 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 175.91 156.64 988950000 112770000 128550000 122460000 0 0 0 68322000 64976000 66851000 9722800 9306000 8188800 62802000 68618000 70594000 16707000 0 21150000 45478000 58770000 52397000 0 0 1291100 5114 290 4984 95560;95561;95562;95563;95564;95565;95566;95567;95568;95569;95570;95571;95572;95573;95574;95575;95576;95577;95578 58490;58491;58492;58493 58490 4 ELVELFFEEIRR Unmodified 1578.8406 0.84059282 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 52.582 51.456 2;3 2.0718E-23 18910 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 247.54 247.54 1888500000 85268000 97303000 77096000 7978500 8511000 8086100 93797000 89715000 73703000 124290000 113860000 86053000 60093000 55458000 56220000 192570000 225600000 224400000 54060000 49546000 44143000 19487000 19318000 21908000 5115 290 4985 95579;95580;95581;95582;95583;95584;95585;95586;95587;95588;95589;95590;95591;95592;95593;95594;95595;95596;95597;95598;95599;95600;95601;95602;95603;95604;95605;95606;95607;95608;95609;95610;95611;95612;95613;95614 58494;58495;58496;58497;58498;58499;58500;58501;58502;58503;58504;58505;58506;58507;58508;58509;58510;58511;58512;58513;58514;58515;58516;58517;58518;58519;58520;58521;58522;58523;58524 58497 31 ELVELLWLK Unmodified 1141.6747 0.67469669 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.395 52.952 2 5.2467E-05 26190 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 148.38 148.38 1266600000 140190000 127100000 109180000 0 0 0 98692000 74944000 67354000 0 0 0 101800000 94795000 90213000 0 0 0 120590000 116500000 123840000 0 1450600 0 5116 1503 4986 95615;95616;95617;95618;95619;95620;95621;95622;95623;95624;95625;95626;95627 58525;58526;58527;58528;58529;58530;58531;58532;58533;58534;58535;58536 58527 12 ELVELLWLKGDEPVTVEGK Unmodified 2153.162 0.16198654 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 50.838 49.443 3 0.022155 19641 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 45.608 41.256 43262000 0 0 0 3837400 4617600 3871600 0 0 0 4338100 5093800 5000200 0 0 0 0 0 0 0 0 0 6598900 0 9904600 5117 1503 4987 95628;95629;95630;95631;95632;95633;95634;95635 58537 58537 0 ELVESDQNWR Unmodified 1274.5891 0.58912916 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 23.202 22.571 2 1.4747E-06 9330 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 164.53 130.15 188580000 7335700 5203600 6787400 0 0 0 0 0 21758000 0 0 0 19022000 15143000 15667000 0 0 0 31185000 36274000 30204000 0 0 0 5118 1371 4988 95636;95637;95638;95639;95640;95641;95642;95643;95644;95645 58538;58539;58540;58541 58540 4 ELVGEENFYTGIAHGEQER Unmodified 2177.0025 0.0025257806 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 33.475 31.915 2;3 2.2247E-45 15056 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 304.42 291.54 1883500000 68627000 70352000 71333000 29715000 30149000 29000000 134410000 131660000 133110000 46128000 33827000 46431000 116040000 109010000 104440000 13392000 10900000 11911000 173640000 210150000 201070000 34020000 37535000 36630000 5119 1427 4989 95646;95647;95648;95649;95650;95651;95652;95653;95654;95655;95656;95657;95658;95659;95660;95661;95662;95663;95664;95665;95666;95667;95668;95669;95670;95671;95672;95673;95674;95675;95676;95677;95678;95679;95680;95681;95682;95683;95684;95685;95686;95687;95688;95689;95690 58542;58543;58544;58545;58546;58547;58548;58549;58550;58551;58552;58553;58554;58555;58556;58557;58558;58559;58560;58561;58562;58563;58564;58565;58566;58567;58568;58569;58570;58571;58572 58562 31 ELVHNVALR Unmodified 1049.5982 0.5981777 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 17.151 17.724 2;3 1.0331E-07 6413 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 198.92 140.73 5853000000 286900000 286490000 269160000 2313700 1731100 1961700 614330000 551510000 570030000 4189500 4113300 3944500 475850000 469910000 452220000 2448500 2924900 2857900 597940000 662270000 581530000 2321700 3313200 2737000 5120 1388 4990 95691;95692;95693;95694;95695;95696;95697;95698;95699;95700;95701;95702;95703;95704;95705;95706;95707;95708;95709;95710;95711;95712;95713;95714;95715;95716;95717;95718;95719;95720;95721;95722;95723;95724;95725;95726 58573;58574;58575;58576;58577;58578;58579;58580;58581;58582;58583;58584;58585;58586;58587;58588;58589;58590;58591;58592;58593;58594;58595;58596;58597;58598;58599;58600;58601;58602;58603;58604;58605 58580 33 ELVLGVVSHNFRPEFINR Unmodified 2125.1433 0.1432572 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 40.761 38.917 3;4 3.5013E-29 19341 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 205.42 201.7 4467000000 512340000 488190000 409210000 9478400 8468100 10082000 590690000 502460000 553820000 29881000 24455000 30308000 200090000 203630000 170800000 0 0 0 244980000 235850000 231010000 2823900 2477600 5961300 5121 1662 4991 95727;95728;95729;95730;95731;95732;95733;95734;95735;95736;95737;95738;95739;95740;95741;95742;95743;95744;95745;95746;95747;95748;95749;95750;95751;95752;95753;95754;95755;95756;95757;95758;95759;95760;95761;95762;95763;95764;95765 58606;58607;58608;58609;58610;58611;58612;58613;58614;58615;58616;58617;58618;58619;58620;58621;58622;58623;58624;58625;58626;58627;58628;58629;58630;58631;58632;58633;58634;58635;58636;58637;58638 58615 32 ELVNTCLSQPGLTTGQLLEHYR Unmodified 2528.2693 0.26932193 675 P0ABS5 dnaG DNA primase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 42.503 40.85 3 1.5129E-06 19060 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 91.276 83.472 134790000 12297000 13245000 14504000 0 0 0 0 10582000 9391400 0 0 0 9545800 9845300 9437000 0 0 0 17460000 13631000 14857000 0 0 0 5122 675 4992 95766;95767;95768;95769;95770;95771;95772;95773;95774;95775;95776 58639;58640 58640 2 ELVQDCR Unmodified 918.42292 0.42291545 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.297 12.857 2 0.0017267 3676 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 124.89 116.06 545800000 29808000 29888000 0 0 0 0 51802000 53178000 47845000 0 5552800 5017000 48885000 45106000 38529000 2415500 1728900 2047600 55895000 57969000 63121000 2481800 2097400 2435500 5123 294 4993 95777;95778;95779;95780;95781;95782;95783;95784;95785;95786;95787;95788;95789;95790;95791;95792;95793;95794;95795;95796 58641;58642;58643;58644;58645 58644 5 ELVSGLTQSATGK Unmodified 1289.6827 0.68269519 1675 P64479 ydiZ Uncharacterized protein YdiZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.465 23.536 2 1.3354E-12 10543 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 195.36 173.89 790220000 136990000 127670000 107690000 0 0 0 118350000 101770000 88571000 0 0 0 22092000 17386000 14994000 0 0 0 22889000 17901000 13932000 0 0 0 5124 1675 4994 95797;95798;95799;95800;95801;95802;95803;95804;95805;95806;95807;95808 58646;58647;58648;58649;58650;58651;58652;58653;58654;58655;58656;58657 58648 12 ELVSGLTQSATGKDPEITITTWEEWNSNR Unmodified 3261.579 0.57896499 1675 P64479 ydiZ Uncharacterized protein YdiZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 50.245 48.838 3 3.8919E-16 24082 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 140.57 133.01 90139000 13066000 11268000 0 0 0 0 15405000 13956000 14653000 0 0 0 5351300 2494700 4431500 0 0 0 4830800 0 0 0 0 4682100 5125 1675 4995 95809;95810;95811;95812;95813;95814;95815;95816;95817;95818 58658;58659;58660;58661 58659 4 ELVSGLTQSATGKDPEITITTWEEWNSNRK Unmodified 3389.6739 0.673928 1675 P64479 ydiZ Uncharacterized protein YdiZ yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 45.262 43.722 4 2.2944E-16 21245 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 137.46 132.97 239860000 41682000 45052000 34586000 0 0 0 46162000 0 46467000 0 1565000 0 0 0 6431000 0 0 0 17916000 0 0 0 0 0 5126 1675 4996 95819;95820;95821;95822;95823;95824;95825;95826 58662;58663;58664;58665;58666;58667 58666 6 ELVTAAK Unmodified 730.4225 0.42250475 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.077 12.631 2 0.0066956 3596 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.401 57.814 2187600000 209600000 179420000 186330000 15395000 17096000 16890000 401620000 459990000 354420000 6525200 5529100 4898800 0 256830000 0 0 1367600 1332700 0 0 0 28076000 23538000 18770000 5127 412 4997 95827;95828;95829;95830;95831;95832;95833;95834;95835;95836;95837;95838;95839;95840;95841;95842;95843;95844 58668;58669;58670;58671;58672;58673;58674 58668 7 ELVTDTR Unmodified 832.42905 0.42904669 523 P0A9H9 cheZ Protein phosphatase CheZ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 12.637 13.56 2 0.03333 4060 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 66.087 43.956 88132000 33737000 31733000 0 7079300 7879800 7703000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5128 523 4998 95845;95846;95847;95848;95849 58675 58675 1 ELWLTGK Unmodified 845.4647 0.46470391 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.426 30.07 2 0.0071597 14184 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 92.467 49.748 149430000 15305000 17210000 13214000 0 0 0 13026000 13292000 13302000 0 0 0 8473300 7568900 7984500 0 0 0 15191000 11486000 13379000 0 0 0 5129 1006 4999 95850;95851;95852;95853;95854;95855;95856;95857;95858;95859;95860;95861 58676;58677;58678;58679;58680;58681;58682;58683;58684;58685;58686;58687 58679 12 ELWQDALQEDDTTPVLAHLSEDDRK Unmodified 2923.3836 0.38355964 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.224 43.81 4 1.9821E-10 21647 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.89 121.62 207640000 22699000 26425000 27182000 0 0 0 22075000 16075000 15770000 0 0 0 12001000 11579000 9881300 0 0 0 18613000 13800000 11540000 0 0 0 5130 1353 5000 95862;95863;95864;95865;95866;95867;95868;95869;95870;95871;95872;95873 58688;58689;58690;58691 58689 4 ELYEQYNK Unmodified 1085.5029 0.50293991 992 P0AG78 sbp Sulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 16.125 16.889 2 0.011257 5925 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.058 47.251 47688000 4120900 5087200 4808700 0 0 0 6451300 4769300 6183400 0 0 0 3161300 0 0 0 0 0 0 6454400 6651300 0 0 0 5131 992 5001 95874;95875;95876;95877;95878;95879;95880;95881;95882;95883;95884 58692;58693;58694;58695;58696;58697;58698 58695 6 ELYEVER Unmodified 936.45526 0.45526144 1356 P31063 yedD Uncharacterized lipoprotein YedD yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 18.876 19.112 2 0.035025 6833 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 65.777 60.922 37552000 0 0 0 0 0 0 5032000 0 6861500 3443000 2584900 2441300 6098900 0 7102100 0 0 0 3988800 0 0 0 0 0 5132 1356 5002 95885;95886;95887;95888;95889;95890;95891;95892 58699;58700 58700 2 ELYLGAVVDR Unmodified 1133.6081 0.60807369 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 1 1 1 1 2 2 2 1 1 2 2 2 1 1 1 37.549 35.905 2 5.0311E-05 16251 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 155.07 109.99 5176800000 577920000 567170000 467500000 4170800 3672500 3888000 246490000 227010000 215430000 3937100 3682200 3002000 307800000 286540000 271070000 4415200 0 4261300 715150000 642470000 607840000 4366100 3320400 5664400 5133 392 5003 95893;95894;95895;95896;95897;95898;95899;95900;95901;95902;95903;95904;95905;95906;95907;95908;95909;95910;95911;95912;95913;95914;95915;95916;95917;95918;95919;95920;95921;95922;95923;95924;95925;95926 58701;58702;58703;58704;58705;58706;58707;58708;58709;58710;58711;58712;58713;58714;58715 58713 15 EMAFVAVR Unmodified 921.47422 0.47422274 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.159 27.862 2 0.00095399 12738 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.11 102.91 46996000 12213000 9400100 9015800 306260 0 0 0 3071300 4679900 0 0 0 0 0 0 0 0 0 1806600 3527200 2975900 0 0 0 5134 1878 5004 95927;95928;95929;95930;95931;95932;95933;95934;95935 58716;58717 58717 2 EMAHQQIGMEVLNR Unmodified 1654.7919 0.79194484 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 26.157 24.933 2;3 8.4325E-35 11175 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 300.98 293.85 2351600000 406390000 407140000 397110000 6363100 3996500 4051500 97423000 112100000 114150000 24140000 24340000 23155000 119070000 121220000 106850000 0 6535300 6412100 113000000 121190000 109640000 9154700 9847700 8280200 5135 298 5005 95936;95937;95938;95939;95940;95941;95942;95943;95944;95945;95946;95947;95948;95949;95950;95951;95952;95953;95954;95955;95956;95957;95958;95959;95960;95961;95962;95963;95964;95965;95966;95967;95968;95969;95970;95971;95972;95973;95974;95975;95976;95977 58718;58719;58720;58721;58722;58723;58724;58725;58726;58727;58728;58729;58730;58731;58732;58733;58734;58735;58736;58737;58738;58739;58740;58741;58742;58743;58744;58745;58746 58736 29 EMAHQQIGMEVLNR Oxidation (M) 1670.7869 0.78685946 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 1 0 By matching By MS/MS 1 1 23.177 22.674 2 0.0097366 9576 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 59.57 50.137 6168800 3500800 0 2668000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5136 298 5005 95978;95979 58747 58747 139 0 EMANVAYR Unmodified 952.44365 0.44365089 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.31 16.168 2 0.0052891 5458 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 86.866 62.894 1144400000 135750000 159370000 175070000 704640 0 671920 0 2196800 0 0 0 0 109700000 93512000 97018000 0 0 0 136240000 123020000 111090000 0 0 0 5137 638 5006 95980;95981;95982;95983;95984;95985;95986;95987;95988;95989;95990;95991 58748;58749;58750;58751;58752;58753;58754;58755 58752 3 EMAQDELR Unmodified 990.44404 0.44404482 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 14.42 15.216 2 0.0010424 5081 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.37 99.322 161370000 19719000 19291000 14294000 323510 0 0 12696000 12098000 10855000 0 0 0 14465000 11349000 8993500 0 0 0 12938000 10880000 13465000 0 0 0 5138 345 5007 95992;95993;95994;95995;95996;95997;95998;95999;96000;96001;96002;96003;96004;96005 58756;58757;58758;58759;58760;58761;58762;58763 58758 8 EMAQSCR Unmodified 880.35312 0.35312133 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 2 5.4711 6.2985 2 0.00043902 1588 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.11 153.2 840380000 53039000 42933000 49473000 0 0 0 52645000 71571000 61254000 0 0 0 89068000 86204000 84011000 0 0 0 83397000 78116000 88674000 0 0 0 5139 92 5008 96006;96007;96008;96009;96010;96011;96012;96013;96014;96015;96016;96017;96018;96019;96020;96021 58764;58765;58766;58767;58768;58769;58770;58771;58772;58773;58774;58775 58772 12 EMASALSCPVGFK Unmodified 1395.6527 0.65265739 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.128 32.275 2 1.2565E-07 15270 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 123.79 120.54 88208000 0 0 0 0 0 0 30798000 28294000 29116000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5140 44 5009 96022;96023;96024;96025;96026;96027;96028;96029 58776;58777;58778;58779;58780;58781;58782;58783 58780 8 EMASGLSMPVGFK Unmodified 1352.6468 0.64684373 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 40.383 38.757 2 3.9751E-05 18176 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 99.53 93.889 215600000 21618000 18335000 16921000 0 0 0 22348000 21447000 0 0 0 0 18745000 15030000 17119000 0 0 0 19102000 23476000 21456000 0 0 0 5141 45 5010 96030;96031;96032;96033;96034;96035;96036;96037;96038;96039;96040 58784;58785;58786;58787;58788;58789;58790;58791;58792;58793;58794 58792 11 EMDDNEGSLTLATR Unmodified 1550.6883 0.68825085 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.962 26.815 2 6.3502E-35 12109 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 255.13 252.03 642430000 183060000 168460000 163640000 0 0 0 7599100 11540000 10073000 0 0 0 11339000 9664200 14261000 0 0 0 23394000 19574000 19826000 0 0 0 5142 1111 5011 96041;96042;96043;96044;96045;96046;96047;96048;96049;96050;96051;96052 58795;58796;58797;58798;58799;58800;58801;58802;58803;58804;58805;58806 58803 9 EMEAQVLDSMDLER Unmodified 1664.7386 0.73857187 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.441 40.837 2 1.2189E-19 15659 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 213.16 204.16 267630000 17951000 14539000 17619000 1271700 823380 716470 16431000 14891000 17143000 2372300 2588600 0 14825000 17591000 15784000 5872600 6304700 8005700 21195000 17651000 20501000 10906000 11740000 10908000 5143 1633 5012 96053;96054;96055;96056;96057;96058;96059;96060;96061;96062;96063;96064;96065;96066;96067;96068;96069;96070;96071;96072;96073;96074;96075 58807;58808;58809;58810;58811;58812;58813;58814;58815;58816;58817;58818;58819;58820;58821;58822;58823;58824 58807 14 EMEAQVLDSMDLERER Unmodified 1949.8823 0.88227599 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 35.764 34.801 3 1.7122E-08 11835 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 117.2 115.69 20874000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4476900 4527000 3645400 0 0 0 3209400 2830300 2184600 5144 1633 5013 96076;96077;96078;96079;96080;96081 58825;58826;58827 58826 3 EMEQAGLRPSLMVDCSHGNSNK Unmodified 2459.0992 0.099161832 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 23.005 22.366 3 0.005429 9506 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 44.953 44.914 67713000 6253800 10027000 7797300 0 0 0 4944100 7326900 0 0 0 0 3977500 4705300 3191000 0 0 0 5482800 5139000 8868600 0 0 0 5145 45 5014 96082;96083;96084;96085;96086;96087;96088;96089;96090;96091;96092 58828 58828 1 EMEVVDATVQPEK Unmodified 1473.7021 0.70211 624 P0AB26 yceB Uncharacterized lipoprotein YceB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.46 25.204 2 2.819E-06 11422 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.82 128.84 73369000 4717700 4800500 4817600 877380 1056200 880740 5087900 4874700 5526500 4023400 3442700 3516400 4711100 4336300 2544000 0 0 0 5479400 3812100 4240800 1456300 1481700 1685600 5146 624 5015 96093;96094;96095;96096;96097;96098;96099;96100;96101;96102;96103;96104;96105;96106;96107;96108;96109;96110;96111;96112;96113 58829;58830;58831;58832;58833 58831 5 EMFETWYK Unmodified 1132.4899 0.48993238 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.629 36.069 2 0.0015297 17432 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 108.09 96.447 1366200000 130530000 129300000 113340000 0 600080 0 101610000 105460000 96154000 0 0 0 105780000 92723000 118810000 913250 0 0 124090000 116650000 130290000 0 0 0 5147 172 5016 96114;96115;96116;96117;96118;96119;96120;96121;96122;96123;96124;96125;96126;96127 58834;58835;58836;58837;58838;58839;58840;58841;58842;58843;58844;58845 58837 12 EMFREDEPMPLTSGEFAVLK Unmodified 2325.1021 0.10210517 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 47.95 46.475 2;3 1.3879E-31 22813 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 256.35 251.27 1532200000 202880000 210200000 203420000 10661000 12467000 11195000 83905000 84722000 82728000 16838000 15790000 19223000 86565000 102990000 80070000 0 0 0 95774000 110650000 102130000 0 0 0 5148 570 5017 96128;96129;96130;96131;96132;96133;96134;96135;96136;96137;96138;96139;96140;96141;96142;96143;96144;96145;96146;96147;96148;96149;96150;96151;96152;96153;96154;96155;96156;96157 58846;58847;58848;58849;58850;58851;58852;58853;58854;58855;58856;58857;58858;58859;58860;58861;58862;58863;58864 58859 19 EMFTLFGPQFVR Unmodified 1470.733 0.73295662 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.139 52.699 2 1.5224E-06 25806 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 177.36 170.51 760430000 102810000 106920000 94200000 0 0 0 30559000 27528000 27165000 0 0 0 67948000 62649000 51884000 0 0 0 61073000 62110000 65595000 0 0 0 5149 181 5018 96158;96159;96160;96161;96162;96163;96164;96165;96166;96167;96168;96169 58865;58866;58867;58868;58869;58870;58871;58872;58873;58874;58875 58869 11 EMGINPETWEY Unmodified 1367.5704 0.57036755 461 P0A8U6 metJ Met repressor yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.648 51.36 2 0.00056903 25362 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 87.181 87.181 96914000 8911600 7450400 6411600 0 0 0 8844200 11680000 9178000 0 0 0 5783800 7811900 5676600 0 0 0 9159700 7977300 8029300 0 0 0 5150 461 5019 96170;96171;96172;96173;96174;96175;96176;96177;96178;96179;96180;96181 58876;58877;58878 58877 3 EMGLQEMTGFSK Unmodified 1356.6054 0.60537285 792 P0ADK8 yibL Uncharacterized protein YibL yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 36.962 35.241 2 0.00051069 17116 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.054 70.677 59805000 16300000 11939000 9366900 0 0 0 4273400 7016800 3881800 0 0 0 0 0 0 0 0 0 2073200 2290100 2664000 0 0 0 5151 792 5020 96182;96183;96184;96185;96186;96187;96188;96189;96190 58879 58879 1 EMGLSLIFIAHDLAVVK Unmodified 1855.0277 0.02774166 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.746 53.531 3 0.0049328 26307 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 51.193 47.753 312320000 45424000 41599000 32646000 19737000 17604000 18181000 0 14498000 0 14815000 0 15409000 6765000 10673000 6493000 2505100 2775000 4431400 15721000 14504000 10189000 5681100 7303100 5369200 5152 1935 5021 96191;96192;96193;96194;96195;96196;96197;96198;96199;96200;96201;96202;96203;96204;96205;96206;96207;96208;96209;96210;96211;96212;96213 58880;58881;58882;58883;58884;58885;58886;58887;58888 58887 9 EMGQWVK Unmodified 876.41637 0.41637351 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.414 20.829 2 0.01319 8506 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.025 75.342 298960000 49552000 46278000 47908000 0 0 0 31347000 31566000 29907000 0 0 0 7915900 10483000 6742000 0 0 0 12409000 10972000 13880000 0 0 0 5153 1817 5022 96214;96215;96216;96217;96218;96219;96220;96221;96222;96223;96224;96225 58889;58890;58891;58892;58893;58894;58895;58896;58897;58898 58889 10 EMGSAVPEEPVLFIKPETALCDLR Unmodified 2700.3503 0.35027437 1802 P76004 ycgM Uncharacterized protein YcgM yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 51.615 50.386 3 4.3263E-15 24598 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.82 135.98 415340000 75197000 77726000 79375000 0 0 0 25432000 0 23676000 0 0 0 27265000 23951000 22104000 0 0 0 19570000 19442000 21606000 0 0 0 5154 1802 5023 96226;96227;96228;96229;96230;96231;96232;96233;96234;96235;96236 58899;58900 58899 2 EMGTGLVVTELMGQGVSAITGDYSR Unmodified 2570.2356 0.23563854 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.355 53.882 3 2.1891E-15 26429 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.74 140.21 292950000 33871000 27463000 24252000 0 0 0 16534000 17630000 16424000 0 0 0 27897000 29349000 23395000 0 0 0 26701000 24812000 24625000 0 0 0 5155 948 5024 96237;96238;96239;96240;96241;96242;96243;96244;96245;96246;96247;96248 58901;58902;58903 58902 3 EMGTVELLTR Oxidation (M) 1163.5856 0.58562368 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 8 6 6 29.179 29.149 2 0.00015641 8460 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 128.38 126.03 367650000 0 0 0 0 0 0 0 0 0 0 0 0 1636000 0 0 146390000 106530000 113100000 0 0 0 0 0 0 5156 36 5025 96249;96250;96251;96252;96253;96254;96255;96256;96257;96258;96259;96260;96261;96262;96263;96264;96265;96266;96267;96268;96269 58904;58905;58906;58907;58908;58909;58910;58911;58912;58913;58914;58915;58916;58917;58918;58919;58920;58921;58922;58923;58924;58925;58926;58927;58928;58929 58915 13 25 EMGTVELLTR Unmodified 1147.5907 0.59070906 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 3 3 3 1 1 1 1 1 1 34.345 33.198 2 2.7348E-05 15886 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.28 111.57 11063000000 114750000 121730000 0 2569700 2277800 2726600 0 114690000 128750000 11662000 7983500 7452300 113510000 102980000 108090000 3243500000 3152000000 3308700000 164110000 156350000 166030000 9412200 10954000 12319000 5157 36 5025 96270;96271;96272;96273;96274;96275;96276;96277;96278;96279;96280;96281;96282;96283;96284;96285;96286;96287;96288;96289;96290;96291;96292;96293;96294;96295;96296;96297;96298;96299;96300 58930;58931;58932;58933;58934;58935;58936;58937;58938;58939;58940;58941;58942;58943;58944;58945;58946;58947;58948;58949;58950;58951;58952;58953;58954;58955;58956;58957;58958;58959 58947 30 EMGYTEPDPR Unmodified 1193.5023 0.50228799 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.949 18.539 2 0.00049843 6799 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 99.139 99.139 431230000 68255000 65737000 56836000 1024900 883670 802620 19287000 20117000 19261000 0 0 0 18754000 19800000 18288000 0 0 0 39509000 39299000 42945000 0 0 431250 5158 34 5026 96301;96302;96303;96304;96305;96306;96307;96308;96309;96310;96311;96312;96313;96314;96315;96316 58960;58961;58962;58963;58964;58965;58966;58967 58964 8 EMHVGHLR Unmodified 977.48652 0.48651876 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 11.264 12.123 2 0.0055045 3149 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.512 64.552 445760000 35201000 0 38615000 0 0 0 0 38536000 37597000 0 0 0 50928000 48585000 58984000 0 0 0 50199000 45697000 41422000 0 0 0 5159 1073 5027 96317;96318;96319;96320;96321;96322;96323;96324;96325;96326 58968 58968 1 EMIISEVR Unmodified 975.50592 0.5059168 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.385 25.345 2 2.6916E-06 10930 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 183.9 130.19 1257900000 99822000 104680000 91062000 0 0 0 99876000 93639000 113950000 2038500 1751500 1554400 97442000 94529000 91089000 1138800 1063700 975890 114840000 121150000 127270000 0 0 0 5160 688 5028 96327;96328;96329;96330;96331;96332;96333;96334;96335;96336;96337;96338;96339;96340;96341;96342;96343;96344 58969;58970;58971;58972;58973;58974;58975;58976;58977;58978;58979;58980 58978 12 EMIQALADAR Unmodified 1116.5597 0.55974328 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.342 27.979 2 1.0696E-08 10251 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 181.41 159.32 3649900000 236480000 213630000 199550000 44313000 41799000 44592000 324260000 315900000 309950000 3734000 5676100 3916100 246360000 248350000 241900000 0 1657300 1960600 289470000 275430000 275340000 108280000 102780000 114590000 5161 679 5029 96345;96346;96347;96348;96349;96350;96351;96352;96353;96354;96355;96356;96357;96358;96359;96360;96361;96362;96363;96364;96365;96366;96367 58981;58982;58983;58984;58985;58986;58987;58988;58989;58990;58991;58992;58993;58994;58995;58996;58997;58998;58999 58986 19 EMKEELAAALMDSHQQK Unmodified 1957.9237 0.92374687 977 P0AG14 sohB Probable protease SohB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.058 27.587 3 1.6143E-06 10726 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 92.8 89.903 171150000 8936100 9541200 8314700 1049600 1051400 0 13158000 22875000 12513000 4762200 7025300 3532700 8544900 13615000 10075000 0 0 0 14871000 14394000 15282000 0 0 1610900 5162 977 5030 96368;96369;96370;96371;96372;96373;96374;96375;96376;96377;96378;96379;96380;96381;96382;96383;96384;96385 59000;59001;59002 59000 3 EMLEHMASTLAQGER Unmodified 1701.7814 0.78143973 291 P0A6Y1 ihfB Integration host factor subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 31.511 30.144 2;3 2.9841E-27 14516 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 284.15 284.15 2954200000 429070000 386590000 328770000 4741400 1510500 5098200 173800000 170570000 185570000 62453000 55717000 48617000 145430000 141280000 141540000 90813000 82871000 93673000 126920000 114720000 128870000 8803400 15795000 11010000 5163 291 5031 96386;96387;96388;96389;96390;96391;96392;96393;96394;96395;96396;96397;96398;96399;96400;96401;96402;96403;96404;96405;96406;96407;96408;96409;96410;96411;96412;96413;96414;96415;96416;96417;96418;96419;96420;96421;96422;96423;96424;96425;96426;96427;96428;96429;96430;96431 59003;59004;59005;59006;59007;59008;59009;59010;59011;59012;59013;59014;59015;59016;59017;59018;59019;59020;59021;59022;59023;59024;59025;59026;59027;59028;59029;59030;59031;59032;59033;59034;59035;59036 59015 32 EMLIADGIDPNELLNSLAAVK Oxidation (M) 2241.1562 0.15624923 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 1 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 55.458 54.442 2;3 1.2611E-42 26790 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 227.34 222.49 587740000 120050 0 65624000 6656700 7190800 6613000 34579000 34048000 33684000 0 0 0 0 51771000 44594000 47779000 47201000 56242000 47424000 63710000 0 11066000 15252000 14180000 5164 728 5032 96432;96433;96434;96435;96436;96437;96438;96439;96440;96441;96442;96443;96444;96445;96446;96447;96448;96449;96450;96451;96452 59037;59038;59039;59040;59041;59042;59043;59044;59045;59046;59047;59048;59049;59050;59051 59043 378 14 EMLIADGIDPNELLNSLAAVK Unmodified 2225.1613 0.16133461 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 1 55.788 54.565 2;3 4.279E-63 25699 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 214.46 206.5 23567000000 779750000 2225500000 2330600000 147400000 166290000 185610000 1225400000 0 395430000 82291000 57116000 67073000 1813400000 1782600000 1907900000 1260200000 1480600000 1269800000 2199900000 1968200000 2032300000 44017000 89313000 56173000 5165 728 5032 96453;96454;96455;96456;96457;96458;96459;96460;96461;96462;96463;96464;96465;96466;96467;96468;96469;96470;96471;96472;96473;96474;96475;96476;96477;96478;96479;96480;96481;96482;96483;96484;96485;96486;96487;96488;96489;96490;96491;96492;96493;96494;96495;96496 59052;59053;59054;59055;59056;59057;59058;59059;59060;59061;59062;59063;59064;59065;59066;59067;59068;59069;59070;59071;59072;59073;59074;59075;59076;59077;59078;59079;59080;59081;59082;59083;59084;59085;59086;59087;59088;59089;59090;59091 59091 40 EMLLDAMENPEK Oxidation (M) 1434.6371 0.63706691 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 6 7 7 5 5 5 6 5 4 32.873 31.392 2 7.992E-09 15132 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 177.06 172.91 738160000 20294000 23964000 17571000 0 0 0 115580000 113550000 110850000 0 0 0 64772000 65049000 62090000 0 0 0 52157000 49770000 42508000 0 0 0 5166 212 5033 96497;96498;96499;96500;96501;96502;96503;96504;96505;96506;96507;96508;96509;96510;96511;96512;96513;96514;96515;96516;96517;96518;96519;96520;96521;96522;96523;96524;96525;96526;96527;96528;96529;96530;96531;96532;96533;96534;96535;96536;96537;96538;96539;96540;96541;96542;96543;96544;96545;96546;96547;96548;96549;96550;96551;96552;96553 59092;59093;59094;59095;59096;59097;59098;59099;59100;59101;59102;59103;59104;59105;59106;59107;59108;59109;59110;59111;59112;59113;59114;59115;59116;59117;59118;59119;59120;59121;59122;59123;59124;59125;59126;59127 59098 70;71 30 EMLLDAMENPEK Unmodified 1418.6422 0.64215228 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.913 37.039 2 4.4536E-12 17129 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 196.27 192.51 12194000000 556770000 420480000 457410000 0 0 0 1180400000 1318900000 1419100000 2089300 2370800 2044900 1415800000 1303400000 1417300000 0 0 0 932320000 921960000 842460000 1145600 0 0 5167 212 5033 96554;96555;96556;96557;96558;96559;96560;96561;96562;96563;96564;96565;96566;96567;96568;96569 59128;59129;59130;59131;59132;59133;59134;59135;59136;59137;59138;59139;59140;59141;59142;59143 59142 15 EMLLDAMENPEKYPQLTIR Unmodified 2290.1337 0.13373965 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 2 3 3 3 2 2 2 3 3 3 1 2 1 3 3 3 1 1 1 47.762 46.384 2;3;4 8.2649E-81 22584 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 390.09 384.81 9787900000 396060000 419040000 407380000 16476000 15843000 19214000 1171100000 1233400000 1177700000 35436000 34256000 33536000 957890000 966620000 845960000 48526000 37023000 32408000 621510000 684710000 581910000 19600000 19774000 12501000 5168 212 5034 96570;96571;96572;96573;96574;96575;96576;96577;96578;96579;96580;96581;96582;96583;96584;96585;96586;96587;96588;96589;96590;96591;96592;96593;96594;96595;96596;96597;96598;96599;96600;96601;96602;96603;96604;96605;96606;96607;96608;96609;96610;96611;96612;96613;96614;96615;96616;96617;96618;96619;96620;96621;96622 59144;59145;59146;59147;59148;59149;59150;59151;59152;59153;59154;59155;59156;59157;59158;59159;59160;59161;59162;59163;59164;59165;59166;59167;59168;59169;59170;59171;59172;59173;59174;59175;59176;59177;59178;59179 59160 36 EMLLDAMENPEKYPQLTIR Oxidation (M) 2306.1287 0.12865427 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 3 1 2 3 3 3 2 2 45.68 44.129 3 9.5652E-10 21419 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 112.74 110.21 359670000 0 0 0 0 0 0 29506000 33904000 64015000 0 2575100 0 52453000 47448000 50924000 0 0 0 38263000 22095000 18488000 0 0 0 5169 212 5034 96623;96624;96625;96626;96627;96628;96629;96630;96631;96632;96633;96634;96635;96636;96637;96638;96639;96640;96641;96642;96643;96644;96645 59180;59181;59182;59183;59184;59185;59186 59180 70;71 7 EMLPEVR Unmodified 872.44259 0.44258826 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.644 22.891 2 0.00066643 9843 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 148.07 109.26 8182800000 188310000 164460000 154900000 0 0 0 940290000 923390000 913890000 4857700 5317700 0 853270000 814680000 750830000 6070300 3832200 3592500 741030000 879270000 820540000 5279600 5133700 3871400 5170 239 5035 96646;96647;96648;96649;96650;96651;96652;96653;96654;96655;96656;96657;96658;96659;96660;96661;96662;96663;96664;96665 59187;59188;59189;59190;59191;59192;59193;59194;59195;59196;59197;59198;59199;59200;59201 59195 15 EMLPEVR Oxidation (M) 888.4375 0.43750288 239 P0A6F3 glpK Glycerol kinase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 18.11 18.655 2 0.11614 6979 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 49.358 40.011 118080000 0 0 0 0 0 0 30604000 24263000 18552000 0 0 0 0 9000800 0 0 0 0 12208000 12061000 11387000 0 0 0 5171 239 5035 96666;96667;96668;96669;96670;96671;96672 59202;59203;59204;59205 59203 2 EMLPIVDKPMIQYIVDEIVAAGIK Unmodified 2684.4533 0.45328287 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 55.975 54.604 3 0.000156 25922 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 74.579 73.68 109890000 22770000 20662000 0 0 0 0 0 0 0 0 0 0 32581000 33458000 414250 0 0 0 0 0 0 0 0 0 5172 583 5036 96673;96674;96675;96676;96677 59206;59207 59207 2 EMLPVLEAVAK Unmodified 1198.6631 0.66314572 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 1 1 1 1 1 2 2 3 1 1 1 2 1 2 1 1 1 45.923 44.52 2;3 0.00029716 21795 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 92.051 92.051 13079000000 1257000000 1314400000 1141500000 25165000 27330000 27543000 1019400000 918630000 833810000 34663000 32115000 33072000 994380000 848680000 859720000 17793000 11479000 12341000 1114200000 1229400000 1258400000 20234000 22930000 24542000 5173 240 5037 96678;96679;96680;96681;96682;96683;96684;96685;96686;96687;96688;96689;96690;96691;96692;96693;96694;96695;96696;96697;96698;96699;96700;96701;96702;96703;96704;96705;96706;96707;96708;96709;96710 59208;59209;59210;59211;59212;59213;59214;59215;59216;59217;59218;59219;59220;59221;59222;59223;59224;59225;59226;59227;59228;59229;59230;59231;59232;59233;59234;59235;59236;59237;59238;59239;59240;59241 59222 34 EMLPVLEAVAK Oxidation (M) 1214.6581 0.65806035 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 2 2 1 2 1 2 2 2 1 38.624 36.869 2 0.0073158 17494 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 65.347 65.347 352800000 42862000 39950000 0 0 753870 0 40500000 39081000 34063000 1349200 0 0 23776000 12346000 20680000 0 0 0 40473000 34112000 22858000 0 0 0 5174 240 5037 96711;96712;96713;96714;96715;96716;96717;96718;96719;96720;96721;96722;96723;96724;96725;96726;96727;96728;96729;96730;96731;96732;96733;96734;96735 59242;59243;59244;59245;59246;59247;59248;59249;59250;59251;59252;59253;59254;59255;59256;59257;59258;59259;59260;59261;59262;59263;59264;59265;59266;59267 59265 100 26 EMLQNSPMALR Unmodified 1288.6268 0.62677699 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.099 28.624 2 1.5747E-10 9724 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 194.9 185.11 1846700000 0 0 0 40544000 40020000 44540000 159440000 166210000 196700000 3198000 3608700 3441000 145040000 144460000 140540000 4084500 0 4068800 170120000 151030000 171270000 85601000 82154000 90594000 5175 679 5038 96736;96737;96738;96739;96740;96741;96742;96743;96744;96745;96746;96747;96748;96749;96750;96751;96752;96753;96754;96755 59268;59269;59270;59271;59272;59273;59274;59275;59276;59277 59275 8 EMMLELINQPEHFK Unmodified 1757.8481 0.84806274 1303 P27431 roxA 50S ribosomal protein L16 arginine hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 2 1 1 1 41.467 39.754 2;3 1.7277E-08 19209 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 176.45 160.56 876990000 93451000 80247000 67569000 1125100 1233800 1310000 76892000 77180000 74417000 2214200 0 2336600 61733000 53435000 59673000 0 1147400 0 65960000 72238000 68195000 6054100 6595400 3979000 5176 1303 5039 96756;96757;96758;96759;96760;96761;96762;96763;96764;96765;96766;96767;96768;96769;96770;96771;96772;96773;96774;96775;96776;96777;96778;96779;96780;96781;96782;96783;96784;96785;96786;96787;96788 59278;59279;59280;59281;59282;59283;59284;59285;59286;59287;59288;59289;59290;59291 59288 13 EMNGSLGVLAQQLQNAK Unmodified 1799.92 0.91998213 791 P0ADK0 yiaF Uncharacterized protein YiaF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 44.447 42.483 2 0.00012744 17042 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 112.94 99.537 33935000 0 0 0 0 0 0 0 5676300 7648300 4778700 4264800 4038300 0 0 2529900 0 0 0 0 0 4998500 0 0 0 5177 791 5040 96789;96790;96791;96792;96793;96794;96795 59292;59293 59292 2 EMNIADYDAELWQAMEQEK Unmodified 2312.9929 0.99294865 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.541 53.093 2;3 3.668E-95 26231 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 350.73 348.88 4030200000 723140000 678340000 638000000 0 0 0 169670000 164380000 148110000 0 0 0 267830000 243010000 232310000 0 0 0 262550000 259980000 242840000 0 0 0 5178 391 5041 96796;96797;96798;96799;96800;96801;96802;96803;96804;96805;96806;96807;96808;96809;96810;96811;96812;96813;96814;96815;96816;96817;96818;96819 59294;59295;59296;59297;59298;59299;59300;59301;59302;59303;59304;59305;59306;59307;59308;59309;59310;59311;59312;59313;59314;59315;59316;59317 59298 24 EMNVFCEAEGQAHR Unmodified 1676.7035 0.70352376 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 1 2 2 2 25.455 24.411 2;3 7.508E-11 11242 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 202.56 196.59 1152400000 203820000 196780000 190740000 0 0 1621200 78120000 80819000 89007000 0 0 0 50247000 36886000 41801000 2979600 0 0 68773000 55785000 55008000 0 0 0 5179 218 5042 96820;96821;96822;96823;96824;96825;96826;96827;96828;96829;96830;96831;96832;96833;96834;96835;96836;96837;96838;96839;96840;96841;96842;96843;96844;96845 59318;59319;59320;59321;59322;59323;59324;59325;59326;59327;59328;59329 59321 12 EMPGFGEQMR Unmodified 1180.5005 0.50051385 901 P0AF03 mog Molybdopterin adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.922 26.774 2 0.00019564 12335 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 121.67 121.67 499420000 57989000 63171000 46347000 0 0 0 35450000 34164000 40429000 0 0 0 39134000 33465000 33661000 0 0 0 38178000 36301000 41132000 0 0 0 5180 901 5043 96846;96847;96848;96849;96850;96851;96852;96853;96854;96855;96856;96857 59330;59331;59332;59333;59334;59335;59336;59337;59338;59339;59340;59341 59333 12 EMQDAFAAR Unmodified 1037.46 0.46002924 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.986 20.472 2 0.00036516 7959 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.17 98.396 204500000 58997000 47789000 50396000 1257600 1127000 1157500 5657700 4557200 5770200 0 0 0 3392800 2084000 2142100 0 0 0 6648600 8394400 5130600 0 0 0 5181 1168 5044 96858;96859;96860;96861;96862;96863;96864;96865;96866;96867;96868;96869;96870;96871;96872 59342;59343;59344 59342 3 EMQEIVDSMTIETYK Unmodified 1815.8271 0.82705252 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.793 41.949 2 1.7973E-21 20497 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 225.15 219.66 140430000 0 0 0 0 0 0 12072000 11815000 8687900 7034300 7352600 5821100 10082000 9229500 8472300 0 0 0 14956000 14814000 16089000 4375300 5021900 4605400 5182 1492 5045 96873;96874;96875;96876;96877;96878;96879;96880;96881;96882;96883;96884;96885;96886;96887 59345;59346;59347;59348;59349;59350;59351;59352;59353 59352 9 EMVDSMK Unmodified 838.35648 0.35647537 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.69 14.251 2 0.0060552 4431 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 97.071 95.452 249980000 0 7179100 0 0 0 0 27937000 25693000 26891000 10208000 11285000 10776000 21477000 15974000 18414000 0 0 988080 18043000 20114000 17409000 6331500 6037700 5225600 5183 146 5046 96888;96889;96890;96891;96892;96893;96894;96895;96896;96897;96898;96899;96900;96901;96902;96903;96904 59354;59355;59356 59356 3 EMVEANLR Oxidation (M) 976.46478 0.46478027 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 4 3 5 1 1 1 1 15.524 15.796 2 0.0040556 3847 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 94.262 66.155 285950000 0 0 19598000 4926500 0 0 9699300 10717000 10903000 5351900 5769000 0 0 0 0 69130000 55118000 58998000 0 16187000 12384000 3453300 0 3719200 5184 36 5047 96905;96906;96907;96908;96909;96910;96911;96912;96913;96914;96915;96916;96917;96918;96919;96920;96921;96922;96923;96924;96925;96926;96927 59357;59358;59359;59360;59361;59362;59363;59364;59365 59357 14 8 EMVEANLR Unmodified 960.46987 0.46986564 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.368 18.669 2 0.00027829 5259 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 148.33 121.19 7564100000 66168000 79371000 0 2925500 3522500 3102000 0 66186000 82076000 17648000 12752000 11810000 110950000 0 0 2337600000 1968000000 2514900000 83358000 87261000 96553000 7797900 6236800 5853100 5185 36 5047 96928;96929;96930;96931;96932;96933;96934;96935;96936;96937;96938;96939;96940;96941;96942;96943;96944;96945;96946;96947 59366;59367;59368;59369;59370;59371;59372;59373;59374;59375;59376;59377;59378;59379;59380;59381;59382;59383;59384;59385;59386 59370 19 EMVMDFFR Unmodified 1073.4674 0.4674228 1688 P64574 yghW Uncharacterized protein YghW yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.484 47.19 2 0.0013173 18840 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 119.89 92.362 111870000 0 0 0 0 0 0 9367800 8739300 9057800 3563500 2175400 3336400 7687400 6003800 5466200 1387300 854290 0 15741000 16259000 16706000 2787700 0 2740500 5186 1688 5048 96948;96949;96950;96951;96952;96953;96954;96955;96956;96957;96958;96959;96960;96961;96962;96963;96964 59387;59388;59389;59390;59391;59392;59393;59394;59395;59396;59397;59398 59388 5 EMYTFEDR Unmodified 1089.4437 0.44371047 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.924 23.935 2 0.00023486 10699 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.84 149.37 608710000 44854000 35913000 50172000 0 0 0 45111000 40748000 45377000 0 0 0 46430000 41790000 35428000 0 0 0 81165000 72457000 69265000 0 0 0 5187 1634 5049 96965;96966;96967;96968;96969;96970;96971;96972;96973;96974;96975;96976 59399;59400;59401;59402;59403;59404;59405;59406;59407;59408;59409;59410 59402 12 ENAAGIPMDAAER Unmodified 1343.614 0.6139637 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.836 22.943 2 6.0193E-11 10010 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 137.89 126.74 1375500000 122610000 94935000 101570000 0 0 0 153570000 165320000 158860000 0 0 0 134370000 110300000 114930000 0 0 0 111230000 107800000 0 0 0 0 5188 56 5050 96977;96978;96979;96980;96981;96982;96983;96984;96985;96986;96987;96988 59411;59412;59413;59414;59415;59416;59417;59418;59419;59420;59421;59422 59416 12 ENAANIK Unmodified 758.39227 0.39226725 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 2 1 2 1 3 2 2 1 2 2 1 1 1 1 1 2 2 3 2 2 2 1 10.401 10.995 2 0.0046378 2440 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 102.98 66.393 10778000000 44681000 0 2448200000 5048600 5593700 3888200 979280000 1248200000 1135300000 87603000 92279000 79162000 714490000 699420000 739870000 79951000 113030000 23668000 825010000 709700000 610190000 53836000 47263000 32285000 5189 397 5051 96989;96990;96991;96992;96993;96994;96995;96996;96997;96998;96999;97000;97001;97002;97003;97004;97005;97006;97007;97008;97009;97010;97011;97012;97013;97014;97015;97016;97017;97018;97019;97020;97021;97022;97023;97024;97025;97026 59423;59424;59425;59426;59427;59428;59429;59430;59431;59432;59433;59434;59435 59433 10 ENAEYHAAR Unmodified 1059.4734 0.47337112 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 3 2 2 2 2 8.9529 9.8141 2;3 0.00011196 2132 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 135.83 130.35 644330000 32226000 17879000 5509000 0 0 0 55510000 60344000 61681000 0 0 0 33749000 37766000 17398000 0 0 0 83416000 102720000 136140000 0 0 0 5190 288 5052 97027;97028;97029;97030;97031;97032;97033;97034;97035;97036;97037;97038;97039;97040;97041;97042;97043;97044;97045;97046 59436;59437;59438;59439;59440;59441;59442;59443;59444;59445;59446;59447;59448;59449 59447 14 ENAMNQPGTEA Unmodified 1160.4768 0.47680152 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.255 16.07 2 0.00016686 5468 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 108.74 108.74 244500000 25722000 25159000 23284000 172200 0 0 21322000 22385000 23976000 0 0 0 21128000 15511000 17923000 0 0 0 15606000 16915000 15401000 0 0 0 5191 963 5053 97047;97048;97049;97050;97051;97052;97053;97054;97055;97056;97057;97058;97059 59450;59451;59452;59453;59454;59455;59456;59457;59458;59459;59460;59461 59456 12 ENCIFLDNPHQAR Unmodified 1612.7416 0.74162383 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 21.742 21.635 2;3 1.3509E-12 9158 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 195.27 191.25 1028800000 31648000 26907000 25046000 6327800 6407500 9741800 106520000 93905000 102410000 69867000 58614000 39650000 56557000 56790000 53380000 5611300 4692500 4748000 85094000 72119000 74361000 9541500 13189000 15634000 5192 27 5054 97060;97061;97062;97063;97064;97065;97066;97067;97068;97069;97070;97071;97072;97073;97074;97075;97076;97077;97078;97079;97080;97081;97082;97083;97084;97085;97086;97087;97088;97089;97090;97091;97092;97093;97094;97095;97096;97097;97098;97099;97100;97101;97102;97103;97104 59462;59463;59464;59465;59466;59467;59468;59469;59470;59471;59472;59473;59474;59475;59476;59477;59478;59479;59480;59481;59482;59483;59484;59485;59486;59487;59488;59489;59490;59491;59492;59493;59494;59495;59496;59497;59498 59471 37 ENDINIAFNQLEVHLHNEKGDEVTEVKR Unmodified 3289.6327 0.63273189 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 2 37.52 35.456 5;6 0.0010551 12445 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 57.299 54.892 92077000 0 0 0 13456000 15527000 14251000 0 0 0 4288500 8676100 9027900 0 0 0 0 0 0 0 0 0 9687900 6499300 10664000 5193 1899 5055 97105;97106;97107;97108;97109;97110;97111;97112;97113;97114;97115;97116;97117;97118;97119;97120 59499;59500;59501;59502;59503 59501 5 ENDLGVGYYQP Unmodified 1253.5564 0.55643205 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.463 38.663 2 0.066585 19069 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 46.462 41.678 140480000 12238000 12507000 10800000 1788700 1890700 2050300 7436600 8536700 8819700 2827200 1978400 0 9907400 8588000 7039400 0 0 0 14589000 15370000 14110000 0 0 0 5194 862 5056 97121;97122;97123;97124;97125;97126;97127;97128;97129;97130;97131;97132;97133;97134;97135;97136;97137 59504 59504 0 ENDPTNSMNPGIGK Unmodified 1472.6566 0.6565568 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.775 20.056 2 7.6114E-11 7964 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.43 155.07 553680000 29436000 27858000 23682000 3428800 3576700 3580000 69839000 61196000 60860000 26179000 23699000 23937000 28478000 20756000 20783000 2066400 1566800 2523800 34177000 28929000 35390000 6412300 7019800 8300500 5195 122 5057 97138;97139;97140;97141;97142;97143;97144;97145;97146;97147;97148;97149;97150;97151;97152;97153;97154;97155;97156;97157;97158;97159;97160;97161 59505;59506;59507;59508;59509;59510;59511;59512;59513;59514;59515;59516;59517;59518;59519;59520;59521;59522;59523;59524;59525 59508 21 ENDVVLVAGK Unmodified 1042.5659 0.56587452 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 22.126 21.963 2 0.001 9176 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.308 70.834 276360000 36992000 41325000 35831000 969000 970640 0 78975000 78348000 2947100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5196 1192 5058 97162;97163;97164;97165;97166;97167;97168;97169 59526;59527 59527 2 ENELEEAVMSDR Unmodified 1420.614 0.61402328 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.937 32.488 2 0.001245 15544 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 79.693 76.437 850750000 133040000 133890000 133150000 0 0 0 43978000 40710000 34831000 0 0 0 58503000 58275000 57182000 0 0 0 54745000 51614000 50836000 0 0 0 5197 297 5059 97170;97171;97172;97173;97174;97175;97176;97177;97178;97179;97180;97181 59528;59529;59530;59531;59532 59528 0 ENELEEAVMSDRDTGAAAEPR Unmodified 2289.0179 0.017917848 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 31.438 30.095 3 1.4535E-15 9879 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 149.94 149.25 98620000 0 0 0 2638800 3393200 3087600 0 0 0 15579000 7435000 10422000 0 0 0 18610000 16910000 16673000 0 0 0 0 3871900 0 5198 297 5060 97182;97183;97184;97185;97186;97187;97188;97189;97190;97191 59533;59534;59535;59536;59537 59534 5 ENEPFDVALR Unmodified 1188.5775 0.57750184 1721 P68679 rpsU 30S ribosomal protein S21 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.646 33.859 2 1.8698E-06 15614 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 160.26 154.61 5479000000 879430000 793060000 763850000 2353000 3225700 0 200030000 207240000 210960000 11576000 11778000 11583000 339250000 333480000 334740000 0 0 0 440100000 462400000 456210000 5976400 6715000 5082000 5199 1721 5061 97192;97193;97194;97195;97196;97197;97198;97199;97200;97201;97202;97203;97204;97205;97206;97207;97208;97209;97210;97211 59538;59539;59540;59541;59542;59543;59544;59545;59546;59547;59548;59549;59550;59551 59550 13 ENEPFDVALRR Unmodified 1344.6786 0.67861287 1721 P68679 rpsU 30S ribosomal protein S21 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 1 2 2 2 2 2 1 1 1 1 2 2 1 2 2 2 27.228 25.949 2;3 6.8522E-06 8261 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 141.93 136.83 352210000 22351000 22158000 12567000 9097600 10159000 9292700 6526100 11516000 6899700 40484000 33778000 34080000 8240100 7512200 4115200 10383000 8919700 11049000 7276800 8168800 4399900 24638000 21350000 17251000 5200 1721 5062 97212;97213;97214;97215;97216;97217;97218;97219;97220;97221;97222;97223;97224;97225;97226;97227;97228;97229;97230;97231;97232;97233;97234;97235;97236;97237;97238;97239;97240;97241;97242;97243;97244;97245;97246;97247;97248;97249;97250;97251 59552;59553;59554;59555;59556;59557;59558;59559;59560;59561;59562;59563;59564;59565;59566;59567 59554 16 ENEQQYIR Unmodified 1078.5043 0.5043369 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.509 14.419 2 9.412E-05 4603 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 162.31 139.38 612300000 27643000 21927000 18412000 17226000 16458000 19700000 72117000 60378000 61087000 0 0 0 35428000 38459000 38362000 0 0 0 66458000 58976000 59671000 0 0 0 5201 649 5063 97252;97253;97254;97255;97256;97257;97258;97259;97260;97261;97262;97263;97264;97265;97266 59568;59569;59570;59571;59572;59573;59574;59575;59576 59568 9 ENFAVFLK Unmodified 966.51747 0.51746776 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.509 37.835 2 0.053768 18482 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.981 36.359 396550000 54583000 46240000 49784000 0 0 0 34227000 30034000 31909000 0 0 0 25424000 23818000 25864000 0 0 0 25128000 23752000 25791000 0 0 0 5202 1244 5064 97267;97268;97269;97270;97271;97272;97273;97274;97275;97276;97277;97278 59577;59578;59579;59580 59577 4 ENFDEWMIPVYAPAPFIPVR Unmodified 2390.1769 0.17692509 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 55.762 54.355 2;3 1.4862E-18 26768 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 222.99 221.72 972760000 371470000 281100000 320190000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5203 1919 5065 97279;97280;97281;97282;97283;97284 59581;59582;59583;59584;59585 59584 5 ENFEAMQGFHAGWR Unmodified 1678.7311 0.73105914 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 1 1 2 1 3 2 2 34.16 32.713 2;3 2.5884E-20 15195 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 223.14 218.85 2430400000 565560000 557120000 488620000 0 1799600 1511300 84276000 97614000 64835000 0 0 0 48404000 54790000 49083000 0 0 0 143220000 136830000 136710000 0 0 0 5204 1264 5066 97285;97286;97287;97288;97289;97290;97291;97292;97293;97294;97295;97296;97297;97298;97299;97300;97301;97302;97303;97304;97305;97306;97307;97308;97309;97310;97311 59586;59587;59588;59589;59590;59591;59592;59593;59594;59595;59596;59597;59598;59599;59600;59601;59602;59603;59604;59605;59606 59602 18 ENFRPGDR Unmodified 989.46789 0.46789181 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 11.503 11.923 1;2 4.8771E-05 2538 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 175.38 140.48 4932500000 70067000 72261000 79231000 0 0 0 41557000 36939000 33550000 309360000 299080000 308060000 64738000 51850000 58547000 879980000 335540000 346880000 51704000 55487000 55582000 556980000 591630000 633510000 5205 935 5067 97312;97313;97314;97315;97316;97317;97318;97319;97320;97321;97322;97323;97324;97325;97326;97327;97328;97329;97330;97331;97332;97333;97334;97335;97336;97337;97338;97339;97340;97341 59607;59608;59609;59610;59611;59612;59613;59614;59615;59616;59617;59618;59619;59620;59621;59622;59623;59624;59625;59626;59627;59628 59612 22 ENGLDLLPVLHNAR Unmodified 1559.842 0.8419898 760 P0AD01 dcuR Transcriptional regulatory protein DcuR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 41.456 40.128 3 1.1697E-05 14007 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 76.262 71.793 40030000 0 0 0 0 0 0 0 0 0 1655300 1651300 2137400 0 0 0 12644000 8710800 11806000 0 0 0 0 0 1424500 5206 760 5068 97342;97343;97344;97345;97346;97347;97348 59629;59630 59630 2 ENGLWIVEAEDIDTGKK Unmodified 1915.9527 0.95272204 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 1 1 1 1 1 1 2 2 2 40.98 39.223 2;3 1.2973E-18 15982 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 186.13 181.79 425210000 0 0 2094900 0 0 0 30436000 22195000 29589000 80817000 66370000 60122000 13257000 12940000 12631000 7909900 6050600 5301100 12557000 12363000 12073000 13333000 13103000 12067000 5207 1088 5069 97349;97350;97351;97352;97353;97354;97355;97356;97357;97358;97359;97360;97361;97362;97363;97364;97365;97366;97367;97368;97369;97370;97371;97372;97373;97374;97375;97376;97377 59631;59632;59633;59634;59635;59636;59637;59638;59639;59640;59641 59632 11 ENGPEDTTQDDDMK Unmodified 1593.6101 0.61006011 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.729 13.398 2 4.0276E-11 3992 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 171.92 171.92 72483000 5744400 0 3898300 0 0 0 6176400 7790900 9494800 0 0 0 8397700 5178500 7728800 2231500 2584500 1542600 3464500 4250700 3999500 0 0 0 5208 1089 5070 97378;97379;97380;97381;97382;97383;97384;97385;97386;97387;97388;97389;97390;97391 59642;59643;59644;59645;59646 59643 5 ENGPEDTTQDDDMKQSIVK Unmodified 2148.9481 0.94810695 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By MS/MS By MS/MS 1 1 18.748 18.731 3 3.2143E-18 5260 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 157.12 152.41 22072000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12512000 9560300 0 0 0 0 0 0 5209 1089 5071 97392;97393 59647;59648 59647 2 ENGTYNEIYK Unmodified 1229.5564 0.55643205 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.116 18.731 2 0.0017975 7122 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.645 76.864 461270000 96805000 99044000 86967000 0 0 0 17029000 10187000 10031000 0 0 0 30175000 30802000 29032000 0 0 0 18159000 18063000 14979000 0 0 0 5210 877 5072 97394;97395;97396;97397;97398;97399;97400;97401;97402;97403;97404;97405 59649;59650 59649 2 ENGTYNEIYKK Unmodified 1357.6514 0.65139506 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 1 2 13.034 13.895 2;3 2.4836E-05 4193 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.57 129.67 209470000 42314000 43110000 37615000 0 0 0 4922300 6448700 5959100 0 0 0 20895000 17462000 15103000 0 0 0 4074200 3559400 8008500 0 0 0 5211 877 5073 97406;97407;97408;97409;97410;97411;97412;97413;97414;97415;97416;97417;97418;97419;97420;97421;97422;97423;97424;97425 59651;59652;59653;59654;59655;59656;59657;59658;59659;59660 59657 8 ENHIIASGSVR Unmodified 1181.6153 0.61528433 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.44 13.209 2 0.00018894 3593 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 94.909 84.998 179880000 24243000 16645000 19516000 0 0 0 15949000 14610000 19190000 0 1082400 0 11300000 10996000 0 0 0 0 15865000 15393000 15092000 0 0 0 5212 1334 5074 97426;97427;97428;97429;97430;97431;97432;97433;97434;97435;97436;97437;97438 59661;59662;59663 59663 3 ENIAPGFSQK Unmodified 1089.5455 0.54547343 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.448 19.932 2 0.00038703 7551 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.92 113.15 320110000 37449000 40302000 34487000 461960 364210 0 16241000 14000000 14538000 0 0 0 21510000 20754000 23257000 0 0 0 31025000 33411000 32309000 0 0 0 5213 623 5075 97439;97440;97441;97442;97443;97444;97445;97446;97447;97448;97449;97450;97451;97452 59664;59665;59666;59667;59668;59669;59670;59671;59672;59673;59674;59675 59672 12 ENITEPEILASLDELIGR Unmodified 2011.0474 0.047350708 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 55.725 54.252 2;3 2.2489E-13 26763 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 184.32 178.17 1297800000 140450000 121500000 121440000 0 0 0 65700000 65851000 77446000 0 0 0 84877000 123810000 110030000 0 0 0 116830000 153280000 116560000 0 0 0 5214 1143 5076 97453;97454;97455;97456;97457;97458;97459;97460;97461;97462;97463;97464;97465;97466;97467;97468;97469;97470;97471;97472;97473;97474;97475;97476 59676;59677;59678;59679 59676 3 ENITNLDACITR Unmodified 1418.6824 0.68237762 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.687 29.24 2 3.0678E-23 13684 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 232.88 227.1 2074800000 56782000 48677000 44716000 18265000 20675000 22970000 215170000 218310000 204920000 87162000 82907000 77117000 138460000 147440000 113730000 13680000 11773000 15169000 156430000 154580000 126940000 35405000 31108000 32364000 5215 1742 5077 97477;97478;97479;97480;97481;97482;97483;97484;97485;97486;97487;97488;97489;97490;97491;97492;97493;97494;97495;97496;97497;97498;97499;97500;97501 59680;59681;59682;59683;59684;59685;59686;59687;59688;59689;59690;59691;59692;59693;59694;59695;59696;59697 59689 18 ENKDFVPYFR Unmodified 1313.6404 0.64043645 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 2 1 2 2 2 2 1 29.867 28.424 2;3 0.0013095 13250 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.192 53.966 345750000 41982000 43597000 40826000 0 0 0 32429000 35899000 31683000 0 642940 770430 17141000 9522100 12805000 0 0 0 26303000 23804000 27839000 509010 0 0 5216 43 5078 97502;97503;97504;97505;97506;97507;97508;97509;97510;97511;97512;97513;97514;97515;97516;97517;97518;97519;97520;97521;97522;97523;97524;97525;97526;97527 59698;59699;59700;59701;59702;59703;59704;59705;59706;59707;59708;59709;59710;59711;59712;59713;59714;59715 59706 18 ENKLDAIMPAHVIYSDVDPR Unmodified 2282.1365 0.13651684 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.103 36.41 3 0.15857 17683 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 17.749 12.656 111160000 9785600 9962500 6411400 0 0 0 8084100 7492100 12174000 0 0 0 8961000 0 10167000 0 0 0 12836000 11866000 13418000 0 0 0 5217 1794 5079 97528;97529;97530;97531;97532;97533;97534;97535;97536;97537;97538 59716 59716 1 ENLALLDEVEQAAHALK Unmodified 1862.9738 0.97379183 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 51.846 50.773 2;3 2.8551E-24 20209 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 256.95 239.58 6559400000 40126000 46414000 35689000 0 0 0 29787000 41326000 41183000 603290000 535940000 573350000 25568000 30543000 28187000 223650000 229530000 232630000 19544000 15156000 18677000 1461800000 1044100000 1282900000 5218 422 5080 97539;97540;97541;97542;97543;97544;97545;97546;97547;97548;97549;97550;97551;97552;97553;97554;97555;97556;97557;97558;97559;97560;97561;97562;97563;97564;97565;97566;97567;97568 59717;59718;59719;59720;59721;59722;59723;59724;59725;59726;59727;59728;59729;59730;59731;59732;59733;59734;59735;59736;59737;59738;59739;59740;59741;59742;59743;59744;59745;59746;59747 59734 30 ENLALLDEVEQAAHALKGSER Unmodified 2292.171 0.17098809 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 2 48.788 47.663 3;4 1.0989E-34 18939 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 210.17 201.78 528490000 0 0 0 0 0 0 0 0 0 13234000 15176000 25339000 0 0 0 16425000 25144000 27634000 0 0 0 99540000 156710000 149300000 5219 422 5081 97569;97570;97571;97572;97573;97574;97575;97576;97577;97578;97579;97580 59748;59749;59750;59751;59752;59753;59754;59755;59756;59757 59757 10 ENLEALLVALK Unmodified 1211.7125 0.71253876 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 52.988 51.644 2;3 0.00014238 25483 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.05 71.783 5103400000 673760000 708030000 647290000 2463700 1489700 1687800 183380000 253090000 188160000 4128000 3537100 3382100 306890000 347010000 317220000 0 3671100 3244900 419180000 477980000 549910000 2453000 3142400 2307300 5220 353 5082 97581;97582;97583;97584;97585;97586;97587;97588;97589;97590;97591;97592;97593;97594;97595;97596;97597;97598;97599;97600;97601;97602;97603;97604;97605;97606;97607;97608;97609;97610;97611;97612;97613;97614;97615 59758;59759;59760;59761;59762;59763;59764;59765;59766;59767;59768;59769;59770;59771;59772;59773;59774;59775 59767 18 ENLEALLVALKK Unmodified 1339.8075 0.80750177 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 2 1 44.309 42.721 2;3 1.2216E-05 20840 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.79 107.74 1318300000 188170000 172030000 161710000 5530800 7111900 4174700 43392000 48470000 44494000 22178000 20362000 18132000 62751000 50582000 60108000 19364000 30272000 42568000 90619000 96604000 98510000 9325000 13009000 8841600 5221 353 5083 97616;97617;97618;97619;97620;97621;97622;97623;97624;97625;97626;97627;97628;97629;97630;97631;97632;97633;97634;97635;97636;97637;97638;97639;97640;97641;97642;97643;97644;97645;97646;97647;97648;97649;97650;97651;97652;97653;97654 59776;59777;59778;59779;59780;59781;59782;59783;59784;59785;59786;59787;59788;59789;59790;59791;59792;59793;59794;59795;59796;59797;59798;59799;59800;59801;59802;59803;59804;59805 59787 30 ENLGSGFISLFR Unmodified 1338.6932 0.6932003 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.961 51.584 2 0.055979 25243 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 46.73 42.264 280260000 39771000 27744000 23975000 0 864340 0 33855000 0 32426000 4162800 4426700 4447700 0 16489000 0 0 0 0 31809000 28040000 23454000 3061200 2941600 2795200 5222 1052 5084 97655;97656;97657;97658;97659;97660;97661;97662;97663;97664;97665;97666;97667;97668;97669;97670 59806;59807;59808 59808 0 ENLINLNSQAVLEK Unmodified 1583.8519 0.85188578 1234 P24173 rfaC Lipopolysaccharide heptosyltransferase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 38.875 36.819 2 0.0030674 14905 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 64.55 62.955 22266000 0 0 0 875680 753350 716530 0 0 0 3107400 3249000 3194500 0 0 0 0 0 0 0 5054500 0 1741200 1740800 1832600 5223 1234 5085 97671;97672;97673;97674;97675;97676;97677;97678;97679;97680 59809 59809 1 ENLSDWDTDSDVLSLLDVVR Unmodified 2290.0965 0.096485745 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.795 54.338 2 2.195E-68 26019 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 383.79 377.52 733690000 34598000 34269000 36433000 0 0 0 51226000 0 33642000 0 0 0 79370000 87126000 75816000 0 0 0 93905000 96829000 110480000 0 0 0 5224 1283 5086 97681;97682;97683;97684;97685;97686;97687;97688;97689;97690;97691 59810;59811;59812;59813;59814;59815 59813 6 ENMAAEK Unmodified 791.34835 0.34835353 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 9.119 9.9162 2 0.081492 2142 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 57.281 31.172 13032000 4215100 0 0 0 0 0 3347800 2492700 2322200 0 0 0 278580 0 375750 0 0 0 0 0 0 0 0 0 5225 1278 5087 97692;97693;97694;97695;97696;97697 59816 59816 1 ENMALVLITHDLALVAEAAHK Unmodified 2258.2093 0.20928785 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 54.776 53.391 3;4 2.8519E-08 26204 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 100.64 97.495 143720000 40905000 38840000 39857000 6565000 6284900 5728900 0 0 0 0 0 0 0 0 0 0 0 0 5536900 0 0 0 0 0 5226 592 5088 97698;97699;97700;97701;97702;97703;97704;97705;97706;97707 59817;59818;59819 59819 2 ENMLVVEDICQR Unmodified 1504.7014 0.7013985 1504 P38051 menF Isochorismate synthase MenF yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.051 35.391 2 4.0487E-05 16364 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.39 106.37 86005000 10286000 9374800 9560600 0 0 0 5680500 7985800 6046900 0 0 0 5441600 6600900 7177500 0 0 0 6490100 5648800 5711700 0 0 0 5227 1504 5089 97708;97709;97710;97711;97712;97713;97714;97715;97716;97717;97718;97719 59820;59821;59822;59823;59824;59825;59826 59826 2 ENNALGAVCAR Unmodified 1173.5561 0.55605489 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 18.18 18.423 2 4.3497E-10 7073 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 180.45 164.57 414440000 0 0 0 0 0 0 120730000 114130000 111730000 2534400 1560400 2657700 29422000 31672000 0 0 0 0 0 0 0 0 0 0 5228 1861 5090 97720;97721;97722;97723;97724;97725;97726;97727;97728;97729 59827;59828;59829;59830;59831;59832;59833;59834;59835 59829 9 ENNFALPAVNCVGTDSINAVLETAAK Unmodified 2717.333 0.3330444 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 1 2 1 54.46 53.016 2;3 3.2433E-61 25976 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 268.6 259.06 6576000000 595670000 656390000 551440000 2847200 2611900 0 672980000 597960000 509040000 2512200 0 0 566500000 521390000 493200000 0 0 0 575490000 273140000 551030000 0 3783900 0 5229 634 5091 97730;97731;97732;97733;97734;97735;97736;97737;97738;97739;97740;97741;97742;97743;97744;97745;97746;97747;97748;97749;97750;97751;97752;97753;97754;97755;97756 59836;59837;59838;59839;59840;59841;59842;59843;59844;59845;59846;59847;59848;59849;59850;59851;59852;59853;59854;59855;59856;59857;59858 59851 23 ENNIDIVECVK Unmodified 1331.6391 0.63911582 815 P0ADW8 yheV Uncharacterized protein YheV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.516 28.26 2 0.00014879 13064 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.06 105.02 193980000 23124000 19750000 21523000 0 0 0 12009000 11270000 12413000 0 0 0 13363000 12726000 10135000 0 0 0 21630000 18951000 17086000 0 0 0 5230 815 5092 97757;97758;97759;97760;97761;97762;97763;97764;97765;97766;97767;97768 59859;59860;59861;59862;59863;59864;59865;59866;59867 59863 6 ENNLGADVVLR Unmodified 1198.6306 0.63060004 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.67 28.365 2 1.8413E-05 13103 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.08 130.43 912310000 69452000 60201000 49487000 0 0 0 80904000 91928000 82095000 0 0 0 60629000 66130000 71097000 0 0 0 101610000 91480000 87295000 0 0 0 5231 158 5093 97769;97770;97771;97772;97773;97774;97775;97776;97777;97778;97779;97780 59868;59869;59870;59871;59872;59873;59874;59875;59876;59877;59878;59879 59873 12 ENNSCSTLR Unmodified 1079.4666 0.46657118 1688 P64574 yghW Uncharacterized protein YghW yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.808 11.451 2 0.00088701 2320 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 88.948 77.299 79880000 0 0 0 0 0 0 7706100 8365900 9057700 0 0 0 4150600 3673300 4602800 0 2288700 1845300 11383000 11981000 10350000 4475200 0 0 5232 1688 5094 97781;97782;97783;97784;97785;97786;97787;97788;97789;97790;97791;97792;97793;97794;97795;97796 59880;59881;59882;59883;59884;59885;59886;59887;59888;59889 59883 9 ENPDKEQLLVVNLSGR Unmodified 1809.9585 0.95847612 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 34.101 32.589 2;3 3.1299E-18 15450 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 254.51 249.33 834310000 182910000 164940000 149020000 2529300 2202300 2318200 47023000 40825000 37518000 5876600 3887100 6541500 29192000 22540000 26120000 0 0 2000300 37351000 37096000 34419000 0 0 0 5233 405 5095 97797;97798;97799;97800;97801;97802;97803;97804;97805;97806;97807;97808;97809;97810;97811;97812;97813;97814;97815;97816;97817;97818;97819;97820;97821;97822;97823;97824;97825;97826;97827 59890;59891;59892;59893;59894;59895;59896;59897;59898;59899;59900;59901;59902;59903;59904;59905;59906;59907;59908;59909;59910 59906 20 ENPGIYPPADVR Unmodified 1326.6568 0.65681479 1363 P31133 potF Putrescine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 26.883 25.939 2 5.0902E-05 11814 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.58 87.249 53069000 13537000 15502000 14547000 0 0 0 0 0 0 0 0 0 0 1693100 0 0 0 0 0 0 7789100 0 0 0 5234 1363 5096 97828;97829;97830;97831;97832 59911;59912;59913 59911 3 ENPLQIVGTINANHALLAQR Unmodified 2171.1811 0.18109927 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.613 44.199 3 1.9775E-18 21727 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 170 167.24 467390000 168110000 168050000 128050000 1800800 1381700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5235 1914 5097 97833;97834;97835;97836;97837 59914;59915;59916 59914 3 ENPLQQLLDSNLR Unmodified 1538.8053 0.80526994 873 P0AEM6 fliA RNA polymerase sigma factor FliA yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 53.644 52.238 2 9.8377E-09 25849 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.88 157.37 36311000 11325000 11515000 13470000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5236 873 5098 97838;97839;97840 59917;59918 59917 2 ENPQADRVPR Unmodified 1180.5949 0.59488324 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 2 1 2 1 2 2 2 11.485 11.793 2;3 0.00072078 2494 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 79.974 70.76 307810000 0 0 0 1002800 1335500 849910 0 0 0 60198000 67628000 54599000 0 0 0 18612000 26518000 22121000 0 0 0 19499000 18189000 17261000 5237 30 5099 97841;97842;97843;97844;97845;97846;97847;97848;97849;97850;97851;97852;97853;97854;97855;97856;97857;97858;97859 59919;59920;59921;59922;59923;59924;59925 59923 7 ENPWTGVGIGAAIGVVLGVLLSR Unmodified 2277.2845 0.28450171 1689 P64581 yqjD Uncharacterized protein YqjD yes yes 0 0 0 By MS/MS By MS/MS 1 1 55.854 54.228 3 0.00012139 27017 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 78.202 77.994 14682000 0 0 0 0 0 0 0 6493000 8188600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5238 1689 5100 97860;97861 59926;59927 59927 2 ENQSLLNGPQVDTSK Unmodified 1628.8006 0.8005785 523 P0A9H9 cheZ Protein phosphatase CheZ yes yes 0 0 0 By matching By MS/MS 1 1 24.822 24.018 2 0.01867 10550 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 58.487 56.074 12699000 7255800 0 5443500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5239 523 5101 97862;97863 59928 59928 1 ENQVVLFEAFK Unmodified 1322.6871 0.68705229 1555 P42599 ygjR Uncharacterized oxidoreductase YgjR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.063 44.582 2 0.00058855 22114 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.681 82.09 311650000 54628000 56657000 50697000 0 0 0 20340000 17916000 21418000 0 0 0 14998000 13322000 14063000 0 0 0 15183000 16740000 15688000 0 0 0 5240 1555 5102 97864;97865;97866;97867;97868;97869;97870;97871;97872;97873;97874;97875 59929;59930;59931;59932;59933;59934;59935;59936 59930 0 ENRPGYPAIAISDVSHISCVGNDFGFNDIFSR Unmodified 3553.6685 0.66846547 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.005 51.582 3;4 5.8826E-98 25347 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 303.19 301.02 2871000000 287660000 263120000 286150000 0 0 0 268450000 301830000 232180000 0 0 0 183440000 202690000 168660000 0 0 0 219410000 222560000 234810000 0 0 0 5241 1658 5103 97876;97877;97878;97879;97880;97881;97882;97883;97884;97885;97886;97887;97888;97889;97890;97891;97892;97893;97894;97895;97896;97897;97898;97899 59937;59938;59939;59940;59941;59942;59943;59944;59945;59946;59947;59948;59949;59950;59951;59952;59953;59954;59955;59956;59957;59958;59959;59960 59952 24 ENSEDAR Unmodified 819.33587 0.33587458 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.7593 5.6347 2 0.0072941 875 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.906 69.171 110020000 0 6199000 5591800 323340 0 0 0 0 0 0 0 0 11181000 7708600 7507400 0 0 0 25961000 22934000 22609000 0 0 0 5242 215 5104 97900;97901;97902;97903;97904;97905;97906;97907;97908 59961;59962;59963;59964 59961 4 ENSEDIYAGIEWK Unmodified 1552.7046 0.70455285 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.76 39.084 2 3.0483E-07 18651 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 150.94 146.92 1405400000 182070000 165980000 151170000 477170 601920 598610 89601000 76766000 77085000 0 0 0 84471000 80953000 80787000 0 0 0 146950000 140020000 127830000 0 0 0 5243 179 5105 97909;97910;97911;97912;97913;97914;97915;97916;97917;97918;97919;97920;97921;97922;97923 59965;59966;59967;59968;59969;59970;59971;59972;59973;59974;59975;59976;59977;59978;59979;59980;59981;59982;59983;59984;59985;59986;59987;59988;59989;59990;59991;59992;59993;59994;59995;59996;59997;59998;59999;60000;60001;60002;60003 59999 39 ENSMACVSFPTCPLAMAEAER Unmodified 2370.0113 0.011258027 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 49.993 48.587 2;3 8.3402E-53 23651 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 264.85 264.85 924500000 96926000 82297000 81879000 1626200 0 0 57989000 51643000 54210000 0 0 0 76363000 67788000 70385000 0 0 0 98396000 94434000 90562000 0 0 0 5244 1143 5106 97924;97925;97926;97927;97928;97929;97930;97931;97932;97933;97934;97935;97936;97937;97938;97939;97940;97941;97942;97943;97944;97945;97946;97947;97948 60004;60005;60006;60007;60008;60009;60010;60011;60012;60013;60014;60015;60016;60017;60018;60019 60009 16 ENSQEAHEAIRPSDVNVMAESLK Unmodified 2553.2129 0.21292926 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 28.866 27.559 3;4 5.4444E-44 12254 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 234.64 223.19 1441400000 123470000 119710000 99364000 0 0 0 107930000 112760000 81064000 6025500 3604300 0 118210000 124980000 120540000 3478100 3769100 3995700 140760000 131100000 127530000 7159500 0 5907400 5245 124 5107 97949;97950;97951;97952;97953;97954;97955;97956;97957;97958;97959;97960;97961;97962;97963;97964;97965;97966;97967;97968;97969;97970;97971;97972;97973;97974;97975;97976;97977;97978;97979;97980;97981;97982 60020;60021;60022;60023;60024;60025;60026;60027;60028;60029;60030;60031;60032;60033;60034;60035;60036;60037;60038;60039;60040;60041;60042;60043;60044 60040 25 ENSVLNTIPYR Unmodified 1304.6725 0.67246486 772 P0AD68 ftsI Peptidoglycan synthase FtsI yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 34.186 31.925 2 0.0026076 12671 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 81.338 67.984 7736300 0 0 0 0 0 0 2888900 0 0 2676200 1118500 0 0 0 0 0 0 0 0 0 0 0 1052600 0 5246 772 5108 97983;97984;97985;97986 60045 60045 1 ENTEGEYSSLGGR Unmodified 1397.6059 0.60590143 1843 P76251 dmlA D-malate dehydrogenase [decarboxylating] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 17.122 17.814 2 2.1379E-05 6370 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 108.7 104.4 38235000 5221000 6653700 4557200 0 0 0 5715200 4466100 7350800 0 0 0 2515600 0 1755000 0 0 0 0 0 0 0 0 0 5247 1843 5109 97987;97988;97989;97990;97991;97992;97993;97994 60046;60047;60048;60049;60050 60049 5 ENTHMLFGDAK Unmodified 1261.5761 0.57612163 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 19.404 19.728 2;3 1.7535E-10 7863 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 193.96 181.92 691880000 24232000 20625000 18919000 6555300 6167200 6447300 71169000 79583000 72223000 22419000 16523000 21607000 47291000 46850000 46487000 3305000 2106200 2891300 45625000 50351000 51184000 9461300 9467100 10385000 5248 633 5110 97995;97996;97997;97998;97999;98000;98001;98002;98003;98004;98005;98006;98007;98008;98009;98010;98011;98012;98013;98014;98015;98016;98017;98018;98019;98020;98021;98022;98023;98024;98025;98026;98027;98028;98029;98030;98031;98032;98033;98034;98035;98036;98037;98038;98039;98040;98041 60051;60052;60053;60054;60055;60056;60057;60058;60059;60060;60061;60062;60063;60064;60065;60066 60057 16 ENTLQQAVGLPDQK Unmodified 1539.7893 0.78928553 1884 P77202 dsbG Thiol:disulfide interchange protein DsbG yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 30.284 28.832 2 2.2725E-14 13558 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 186.36 177.17 285400000 28925000 29936000 22551000 0 0 0 26264000 25542000 25096000 749900 0 0 16726000 16864000 11766000 0 0 0 23820000 27055000 30102000 0 0 0 5249 1884 5111 98042;98043;98044;98045;98046;98047;98048;98049;98050;98051;98052;98053;98054 60067;60068;60069;60070 60067 4 ENTQEVHAIVPVPIASYLLNEK Unmodified 2463.3009 0.30093963 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 51.665 50.474 3 0.003174 23590 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 53.603 52.619 94653000 32044000 28928000 0 0 1250500 0 0 0 0 0 0 0 15559000 0 16871000 0 0 0 0 0 0 0 0 0 5250 1183 5112 98055;98056;98057;98058;98059 60071 60071 1 ENVADSR Unmodified 789.3617 0.3616954 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 5.5186 6.4618 2 0.041642 1243 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 64.567 46.188 21653000 0 0 0 0 0 0 0 0 0 0 0 0 5610500 5351000 5610300 0 0 0 0 0 5080700 0 0 0 5251 1306 5113 98060;98061;98062;98063 60072;60073 60073 2 ENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTK Unmodified 3634.5318 0.53184993 616 P0AAV6 ybgS Uncharacterized protein YbgS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 25.774 24.707 3;4 5.979E-29 11004 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.1 164.1 192870000 69589000 54926000 50535000 0 0 0 0 7364900 6885200 0 0 0 0 3569800 0 0 0 0 0 0 0 0 0 0 5252 616 5114 98064;98065;98066;98067;98068;98069;98070 60074;60075;60076;60077 60076 4 ENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTKDEEHK Unmodified 4272.7979 0.79785403 616 P0AAV6 ybgS Uncharacterized protein YbgS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 3 3 3 1 2 1 1 2 1 20.787 21.15 3;4;5 5.6535E-39 8291 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 187.79 187.79 481950000 148750000 130450000 125870000 0 0 0 14445000 0 31743000 0 0 0 7464900 3665400 0 0 0 0 11740000 7822200 0 0 0 0 5253 616 5115 98071;98072;98073;98074;98075;98076;98077;98078;98079;98080;98081;98082;98083;98084;98085;98086;98087 60078;60079;60080;60081;60082;60083;60084;60085;60086;60087;60088;60089;60090;60091 60087 14 ENVIVGR Unmodified 785.43955 0.43955179 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 2 2 1 1 1 1 1 2 1 1 1 1 14.491 14.987 2 0.0012847 3768 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 132.72 79.008 17229000000 340910000 330860000 299170000 1625000 0 0 281930000 277690000 214410000 1308900000 1029000000 1159800000 0 0 132900000 2624500000 2184200000 2389400000 268590000 260480000 231880000 1340100000 1237000000 1315300000 5254 458 5116 98088;98089;98090;98091;98092;98093;98094;98095;98096;98097;98098;98099;98100;98101;98102;98103;98104;98105;98106;98107;98108;98109;98110;98111;98112 60092;60093;60094;60095;60096;60097;60098;60099;60100;60101;60102;60103;60104;60105;60106;60107;60108;60109;60110 60095 18 ENVIWFDLHEDEQSLK Unmodified 2000.948 0.94797101 832 P0AE45 ytfL UPF0053 inner membrane protein YtfL yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 45.345 43.343 3 0.014995 17676 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 51.193 47.474 10949000 0 0 0 0 1929200 1106500 0 0 0 2666900 2005900 1818500 0 0 0 0 0 0 0 0 0 0 0 1422300 5255 832 5117 98113;98114;98115;98116;98117;98118 60111;60112 60111 0 ENVLTDGIQTFPDR Unmodified 1603.7842 0.78420015 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 40.567 38.902 2;3 3.4378E-35 18887 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 262.56 256.03 1615700000 94722000 95180000 86060000 0 0 0 201820000 201940000 180660000 0 0 0 110980000 106220000 106210000 0 0 0 161080000 139560000 131320000 0 0 0 5256 1510 5118 98119;98120;98121;98122;98123;98124;98125;98126;98127;98128;98129;98130;98131;98132;98133;98134;98135;98136;98137;98138;98139;98140;98141;98142 60113;60114;60115;60116;60117;60118;60119;60120;60121;60122;60123;60124;60125;60126 60122 12 ENVMQLFNVLLGDNHGLDIDTLDKDVAHDSR Unmodified 3492.6943 0.69434587 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 1 1 54.678 53.363 4;5 3.1631E-33 26327 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 198.02 197.54 3837200000 100700000 258960000 322210000 19599000 0 16515000 288630000 297250000 370820000 29135000 28087000 30556000 261720000 244700000 222100000 11015000 27084000 45076000 404720000 410140000 395290000 23588000 29300000 0 5257 1409 5119 98143;98144;98145;98146;98147;98148;98149;98150;98151;98152;98153;98154;98155;98156;98157;98158;98159;98160;98161;98162;98163;98164;98165;98166;98167;98168;98169;98170;98171;98172;98173;98174;98175;98176 60127;60128;60129;60130;60131;60132;60133;60134;60135;60136;60137;60138;60139;60140;60141;60142 60131 16 ENVSFIALVHSAK Unmodified 1413.7616 0.76161421 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 2 2 2 1 2 2 2 2 2 2 1 1 1 35.32 33.568 2;3 6.1417E-05 16087 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.961 71.091 259610000 4338000 5218100 0 0 849930 0 24078000 17242000 23020000 5688300 5466200 4759500 21142000 18578000 19443000 0 0 0 32683000 39387000 29012000 2404100 2801300 3499700 5258 1494 5120 98177;98178;98179;98180;98181;98182;98183;98184;98185;98186;98187;98188;98189;98190;98191;98192;98193;98194;98195;98196;98197;98198;98199;98200;98201;98202;98203;98204 60143;60144;60145;60146;60147;60148;60149;60150;60151;60152;60153;60154;60155;60156 60149 12 ENVTSIIGNGVVLSPAALMK Unmodified 2012.0976 0.09761214 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.072 52.632 2;3 3.927E-19 24974 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 231.17 225.67 866150000 90288000 79605000 94153000 0 0 0 48897000 60640000 54462000 0 0 0 73230000 68768000 57558000 0 0 0 84292000 79522000 74735000 0 0 0 5259 333 5121 98205;98206;98207;98208;98209;98210;98211;98212;98213;98214;98215;98216;98217;98218;98219;98220;98221;98222;98223;98224;98225;98226;98227;98228 60157;60158;60159;60160;60161;60162;60163;60164;60165;60166;60167;60168;60169;60170;60171;60172;60173;60174;60175;60176 60171 20 ENYPTSQAIGAPLFR Unmodified 1662.8366 0.83657007 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 1 1 1 2 2 41.192 39.208 2;3 5.8744E-12 19362 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 175.86 169.63 341350000 0 0 0 0 0 0 50520000 50714000 51249000 27893000 25242000 28252000 19557000 16028000 16012000 0 1361700 0 14822000 13304000 11152000 4616000 5319500 5307800 5260 500 5122 98229;98230;98231;98232;98233;98234;98235;98236;98237;98238;98239;98240;98241;98242;98243;98244;98245;98246;98247;98248;98249;98250;98251;98252 60177;60178;60179;60180;60181;60182;60183;60184;60185;60186;60187;60188;60189;60190;60191;60192;60193 60184 17 ENYQGIRPAPGYPACPEHTEK Unmodified 2413.1121 0.11209301 1083 P13009 metH Methionine synthase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 18.532 18.787 4 0.0043948 5938 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 48.053 48.053 69587000 0 8341800 0 0 3530400 0 0 10238000 5377400 9813100 6828100 4118700 0 0 5643500 0 0 0 10826000 0 0 2403500 2467200 0 5261 1083 5123 98253;98254;98255;98256;98257;98258;98259;98260;98261;98262;98263 60194;60195 60195 2 EPAGTGGFGYDPIFFVPSEGK Unmodified 2171.0211 0.021135958 1600 P52061 rdgB dITP/XTP pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 53.713 52.266 2;3 1.3668E-21 25575 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 170.49 151.16 627500000 53185000 38243000 40201000 0 0 0 50346000 47660000 44858000 0 0 0 55093000 49522000 41307000 0 0 0 70307000 62881000 73900000 0 0 0 5262 1600 5124 98264;98265;98266;98267;98268;98269;98270;98271;98272;98273;98274;98275;98276;98277;98278;98279;98280;98281;98282;98283;98284;98285;98286 60196;60197;60198;60199;60200;60201;60202;60203;60204;60205;60206;60207;60208;60209 60200 14 EPAILAEISGIVSFGK Unmodified 1629.8978 0.89777334 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 1 1 2 3 3 3 3 3 3 3 2 3 2 3 3 2 3 3 3 2 2 55.763 54.466 2;3 2.3524E-25 21002 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 231.67 213.86 24471000000 239760000 236820000 216410000 2506400 3026500 7832200 192570000 193950000 176650000 1222000000 1087400000 1114100000 184630000 179290000 202240000 4360600000 6705000000 2100400000 334570000 317470000 242140000 1659600000 1832800000 1658700000 5263 458 5125 98287;98288;98289;98290;98291;98292;98293;98294;98295;98296;98297;98298;98299;98300;98301;98302;98303;98304;98305;98306;98307;98308;98309;98310;98311;98312;98313;98314;98315;98316;98317;98318;98319;98320;98321;98322;98323;98324;98325;98326;98327;98328;98329;98330;98331;98332;98333;98334;98335;98336;98337;98338;98339;98340;98341;98342;98343;98344;98345;98346;98347;98348 60210;60211;60212;60213;60214;60215;60216;60217;60218;60219;60220;60221;60222;60223;60224;60225;60226;60227;60228;60229;60230;60231;60232;60233;60234;60235;60236;60237;60238;60239;60240;60241;60242;60243;60244;60245;60246;60247;60248;60249;60250;60251;60252;60253;60254;60255;60256;60257 60219 48 EPAILAEISGIVSFGKETK Unmodified 1988.083 0.083007933 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 53.711 53.767 3 1.2401E-06 20160 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 89.507 86.446 44561000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10559000 13466000 20536000 0 0 0 0 0 0 5264 458 5126 98349;98350;98351 60258;60259;60260 60260 3 EPALLSGGVTVSGGHVYIGSEK Unmodified 2156.1113 0.11134795 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.104 36.312 3 1.643E-06 17594 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.483 86.146 130250000 6755600 5027200 4975000 1037000 1017500 686710 7233900 6339000 0 0 4015400 4177800 9826300 9695400 8743700 0 0 0 17608000 20190000 15353000 2946900 2367800 2250600 5265 1940 5127 98352;98353;98354;98355;98356;98357;98358;98359;98360;98361;98362;98363;98364;98365;98366;98367;98368;98369;98370 60261;60262;60263;60264;60265;60266 60261 6 EPANDNINLEAAGVK Unmodified 1553.7686 0.76855009 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.138 25.99 2 6.973E-10 11717 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 199.12 191.23 835660000 77612000 70834000 63278000 0 0 0 86385000 72536000 74098000 0 0 0 64827000 57904000 66461000 0 0 0 70999000 64994000 65730000 0 0 0 5266 128 5128 98371;98372;98373;98374;98375;98376;98377;98378;98379;98380;98381;98382 60267;60268;60269;60270;60271;60272;60273;60274;60275;60276;60277;60278 60274 12 EPARPMVAIVGGSK Unmodified 1410.7653 0.76531938 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 21.476 21.723 2;3 7.8797E-20 8760 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 221.09 195.15 7679100000 679040000 736800000 643610000 0 355490 0 847560000 800990000 811350000 0 0 0 424120000 452950000 486190000 0 0 0 566910000 662550000 566700000 0 0 0 5267 321 5129 98383;98384;98385;98386;98387;98388;98389;98390;98391;98392;98393;98394;98395;98396;98397;98398;98399;98400;98401;98402;98403;98404;98405;98406;98407 60279;60280;60281;60282;60283;60284;60285;60286;60287;60288;60289;60290;60291;60292;60293;60294;60295;60296;60297;60298 60287 20 EPARPMVAIVGGSK Oxidation (M) 1426.7602 0.76023401 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 1 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.938 17.677 3 0.025853 6449 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 41.967 36.019 80126000 6388500 6233300 8903800 0 0 0 18201000 13312000 13667000 0 0 0 2929300 2940000 2763200 0 0 0 0 4788400 0 0 0 0 5268 321 5129 98408;98409;98410;98411;98412;98413;98414;98415;98416;98417 60299 60299 145 1 EPDLNLLQFLQK Unmodified 1456.7926 0.79257999 798 P0ADP9 yihD Protein YihD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 1 2 2 2 1 1 1 54.723 53.293 2;3 2.751E-06 26134 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.48 130.33 909790000 143600000 128310000 138530000 1573200 2271000 1966500 70696000 60630000 61240000 0 0 0 58974000 57372000 54979000 0 0 0 39575000 45031000 45039000 0 0 0 5269 798 5130 98418;98419;98420;98421;98422;98423;98424;98425;98426;98427;98428;98429;98430;98431;98432;98433;98434;98435;98436;98437;98438;98439;98440 60300;60301;60302;60303;60304;60305;60306;60307;60308 60307 9 EPDYLDIPAFLR Unmodified 1447.7347 0.73473076 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 54.575 53.143 2 1.8628E-10 21407 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 128.86 120.38 404700000 0 0 0 0 0 0 0 0 80943000 0 0 0 0 66771000 0 0 0 0 93702000 87408000 75873000 0 0 0 5270 502 5131 98441;98442;98443;98444;98445;98446;98447;98448 60309;60310;60311;60312;60313;60314;60315;60316 60309 8 EPDYLDIPAFLRK Unmodified 1575.8297 0.82969378 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 47.565 46 3 0.00038077 18580 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 61.641 57.25 52290000 0 0 0 2272300 3127300 2477100 0 0 0 10673000 11767000 9843600 0 0 0 2338400 0 0 0 0 0 2867100 3625600 3298600 5271 502 5132 98449;98450;98451;98452;98453;98454;98455;98456;98457;98458 60317;60318;60319 60317 0 EPEIVDTANFLITLGAK Unmodified 1829.9775 0.97748023 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 55.109 53.667 3 7.4875E-05 26265 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 76.341 74.378 178860000 13018000 22103000 16019000 0 0 0 0 3656000 0 0 0 0 20196000 26331000 23055000 0 0 0 25737000 0 28744000 0 0 0 5272 311 5133 98459;98460;98461;98462;98463;98464;98465;98466;98467 60320;60321 60320 2 EPENYDVR Unmodified 1020.4512 0.45123869 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 12.844 13.809 2 0.037525 3923 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 67.981 51.205 30206000 0 0 0 0 0 0 0 0 0 0 0 0 4668600 8498100 5683900 0 0 0 4854000 0 6501000 0 0 0 5273 1959 5134 98468;98469;98470;98471;98472 60322;60323;60324;60325 60325 0 EPFNEEK Unmodified 891.39741 0.39741221 419 P0A8D0 nrdR Transcriptional repressor NrdR yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 12.172 13.02 2 0.014893 3768 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 82.305 64.744 87400000 11604000 0 0 0 0 0 0 12393000 10505000 0 0 0 10591000 0 8054100 0 0 0 10286000 11967000 11999000 0 0 0 5274 419 5135 98473;98474;98475;98476;98477;98478;98479;98480 60326;60327 60326 2 EPFNLGR Unmodified 831.4239 0.42390173 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.89 22.995 2 0.0028253 10350 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.54 103.31 523940000 100130000 92062000 83676000 1048400 1253900 1168900 17201000 19067000 14410000 0 0 0 21707000 22386000 19160000 0 0 0 42380000 45967000 40769000 0 0 1550400 5275 34 5136 98481;98482;98483;98484;98485;98486;98487;98488;98489;98490;98491;98492;98493;98494;98495;98496 60328;60329;60330;60331;60332;60333;60334;60335;60336;60337;60338;60339;60340 60329 12 EPHIPDLSASR Unmodified 1220.6149 0.61494998 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 22.892 22.266 3 4.7056E-05 9436 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.171 83.555 309000000 4467800 0 0 0 0 0 41824000 42819000 40375000 0 0 785650 31374000 27668000 21577000 0 0 0 30084000 32432000 35596000 0 0 0 5276 785 5137 98497;98498;98499;98500;98501;98502;98503;98504;98505;98506;98507 60341;60342;60343;60344 60343 3 EPHSVIGSSCIGASVIGGICNNSGGSLVQR Unmodified 3011.4553 0.45530157 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.951 39.109 3 9.1142E-43 15589 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 224.53 218.81 202820000 7058800 6770500 4240200 3254800 4199700 2856200 0 15384000 18413000 28291000 22211000 25181000 4972200 4673100 5776300 0 0 0 9761800 9665900 10016000 7020800 7514500 5561500 5277 122 5138 98508;98509;98510;98511;98512;98513;98514;98515;98516;98517;98518;98519;98520;98521;98522;98523;98524;98525;98526;98527 60345;60346;60347;60348;60349;60350;60351;60352 60346 8 EPIAECHMLLPQAYLGNVITLCVEK Unmodified 2897.4489 0.44894255 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.722 52.442 3 2.6834E-07 20953 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 107.88 105.44 350920000 18361000 13533000 14630000 0 0 3331200 27672000 29054000 22453000 5329500 0 5107100 17760000 15554000 10917000 14527000 0 3000500 31745000 24952000 28175000 20775000 19432000 24610000 5278 1633 5139 98528;98529;98530;98531;98532;98533;98534;98535;98536;98537;98538;98539;98540;98541;98542;98543;98544;98545;98546;98547 60353;60354;60355;60356 60356 4 EPIAECHMLLPQAYLGNVITLCVEKR Unmodified 3053.5501 0.55005358 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 49.479 49.207 4 1.8167E-05 18859 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 84.942 82.719 23379000 0 0 0 0 1144500 0 0 0 0 0 0 0 0 0 0 9267500 6200900 6766600 0 0 0 0 0 0 5279 1633 5140 98548;98549;98550;98551 60357;60358;60359 60357 3 EPIIEYLNSNIVLLK Unmodified 1756.9975 0.99748739 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.621 53.173 2 2.0211E-11 26249 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.9 154.31 494120000 82746000 78338000 76910000 0 0 0 15589000 15485000 17494000 0 0 0 25990000 26098000 28472000 0 0 0 42864000 41064000 43064000 0 0 0 5280 1444 5141 98552;98553;98554;98555;98556;98557;98558;98559;98560;98561;98562;98563 60360;60361;60362;60363;60364;60365;60366 60364 7 EPIKNEANNGLK Unmodified 1325.6939 0.69392858 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 11.411 12.249 2;3 6.911E-18 3209 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 190.02 165.99 1253100000 131600000 95266000 200160000 0 0 0 97701000 100840000 81168000 0 0 0 100940000 76940000 101100000 0 0 0 94109000 88295000 84945000 0 0 0 5281 1222 5142 98564;98565;98566;98567;98568;98569;98570;98571;98572;98573;98574;98575;98576;98577;98578;98579;98580;98581;98582;98583;98584;98585;98586;98587 60367;60368;60369;60370;60371;60372;60373;60374;60375;60376;60377;60378;60379;60380;60381;60382;60383;60384;60385 60379 19 EPILCAPNDPDDARPLSAVQGEK Unmodified 2491.2013 0.20130194 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 32.997 31.537 2;3 1.0642E-43 14948 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 308.04 300.06 1984900000 300120000 309130000 270910000 0 0 0 117270000 94592000 89021000 0 0 0 102090000 86219000 79305000 0 0 0 189370000 175220000 171690000 0 0 0 5282 1444 5143 98588;98589;98590;98591;98592;98593;98594;98595;98596;98597;98598;98599;98600;98601;98602;98603;98604;98605;98606;98607;98608;98609 60386;60387;60388;60389;60390;60391;60392;60393;60394;60395;60396;60397;60398;60399;60400;60401;60402 60397 17 EPILGLDVLQTATR Unmodified 1524.8512 0.8511575 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 51.146 49.89 2 5.4059E-11 23258 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 204.17 197.64 439350000 4486500 3212900 0 0 0 0 67752000 71428000 70238000 0 0 0 46669000 43686000 47486000 0 0 0 28452000 30619000 25320000 0 0 0 5283 1087 5144 98610;98611;98612;98613;98614;98615;98616;98617;98618;98619;98620 60403;60404;60405;60406;60407 60407 5 EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLR Unmodified 4287.9741 0.97405351 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 55.18 55.236 3;4 1.4735E-37 20893 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 182.15 180.94 2025200000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 596330000 749840000 679050000 0 0 0 0 0 0 5284 36 5145 98621;98622;98623;98624;98625;98626 60408;60409;60410;60411;60412;60413 60413 6 EPLPPESPLWQHPR Unmodified 1681.8576 0.85763986 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 31.215 29.818 3 0.00013454 13891 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.268 57.772 91608000 23847000 18559000 0 0 0 0 4658800 10287000 0 0 0 0 8249000 0 0 0 0 0 7228600 9480700 9297600 0 0 0 5285 1788 5146 98627;98628;98629;98630;98631;98632;98633;98634 60414;60415;60416;60417;60418;60419;60420 60418 2 EPNMAETK Unmodified 918.41168 0.41168206 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 11.217 12.089 2 0.0029169 3034 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.492 75.937 639760000 0 0 63985000 0 0 0 0 0 125390000 0 0 0 0 145290000 0 0 0 0 173250000 131840000 0 0 0 0 5286 1872 5147 98635;98636;98637;98638;98639 60421;60422 60422 2 EPQCVDDVLSVDANAR Unmodified 1786.8156 0.81557663 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.817 33.369 2 0.0069084 15404 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 72.958 66.717 53473000 4163900 4436500 2827800 0 0 0 5629900 4659700 5832100 0 0 0 3597100 4201300 3535100 0 0 0 4264400 5530100 4795400 0 0 0 5287 1575 5148 98640;98641;98642;98643;98644;98645;98646;98647;98648;98649;98650;98651 60423 60423 1 EPQGFVADATINTPNGVLVASGK Unmodified 2284.1699 0.16992546 768 P0AD49 raiA Ribosome-associated inhibitor A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 1 43.366 41.695 2;3 3.5392E-53 20604 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 318.32 313.52 1330700000 98917000 81509000 71223000 2912000 1872100 1676000 122650000 117150000 102590000 5140200 9330600 8761400 114400000 126240000 121330000 0 0 0 119660000 121690000 101670000 0 1961000 0 5288 768 5149 98652;98653;98654;98655;98656;98657;98658;98659;98660;98661;98662;98663;98664;98665;98666;98667;98668;98669;98670;98671;98672;98673;98674;98675;98676;98677;98678;98679;98680;98681 60424;60425;60426;60427;60428;60429;60430;60431;60432;60433;60434;60435;60436;60437;60438;60439;60440;60441;60442;60443;60444;60445;60446 60428 23 EPQLDAMLEHYGIK Unmodified 1642.8025 0.80249275 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 43.595 41.991 3 0.00011069 20781 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 67.275 60.838 206570000 39290000 37436000 32435000 0 0 0 24326000 25234000 20399000 0 0 0 0 0 0 0 0 0 0 0 27454000 0 0 0 5289 1298 5150 98682;98683;98684;98685;98686;98687;98688 60447;60448;60449;60450;60451;60452;60453;60454 60450 8 EPQLTELK Unmodified 956.51786 0.51786169 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS 1 1 21.614 21.643 2 0.054607 8837 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 63.565 47.518 42666000 0 0 0 0 0 0 0 18522000 24143000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5290 784 5151 98689;98690 60455;60456 60456 0 EPQLTELKK Unmodified 1084.6128 0.61282471 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.38 15.176 2 0.00019746 4691 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 130.27 114.83 416440000 48664000 50246000 43957000 340360 265240 0 38015000 35055000 36168000 0 0 0 21289000 23847000 22488000 0 0 0 36031000 30249000 29825000 0 0 0 5291 784 5152 98691;98692;98693;98694;98695;98696;98697;98698;98699;98700;98701;98702;98703;98704 60457;60458;60459;60460;60461;60462;60463;60464;60465 60463 9 EPRPLPK Unmodified 835.49159 0.49158736 407 P0A884 thyA Thymidylate synthase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.843 11.636 2 0.12469 2800 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 58.981 40.176 217820000 24555000 17576000 21015000 0 0 0 19168000 21105000 22897000 0 0 0 0 22343000 22337000 0 0 0 0 46823000 0 0 0 0 5292 407 5153 98705;98706;98707;98708;98709;98710;98711;98712;98713 60466;60467 60467 2 EPTPEELAER Unmodified 1169.5564 0.55643205 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 21.079 21.306 2 1.2252E-06 8681 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 167.23 166.36 1744200000 81286000 66317000 64188000 0 0 0 66816000 72940000 75211000 0 0 0 75625000 68299000 70258000 319340000 221650000 231090000 106920000 120260000 102190000 1818300 0 0 5293 36 5154 98714;98715;98716;98717;98718;98719;98720;98721;98722;98723;98724;98725;98726;98727;98728;98729;98730 60468;60469;60470;60471;60472;60473;60474;60475;60476;60477;60478;60479;60480;60481;60482 60474 15 EPVDAFFDK Unmodified 1066.4971 0.49712625 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.235 33.77 2 0.0010908 16096 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.429 87.325 945300000 100660000 89918000 69774000 0 0 0 74821000 72729000 72135000 0 0 0 69763000 67244000 62868000 0 0 0 89951000 92879000 82558000 0 0 0 5294 62 5155 98731;98732;98733;98734;98735;98736;98737;98738;98739;98740;98741;98742 60483;60484;60485;60486;60487;60488;60489;60490;60491;60492;60493;60494 60490 12 EPVLVSGTDGVGTK Unmodified 1357.7089 0.70890994 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 0 By matching By MS/MS 1 1 24.173 23.469 2 3.0136E-06 10171 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.68 117.6 20125000 9648600 0 10476000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5295 174 5156 98743;98744 60495 60495 1 EPVTEAER Unmodified 929.44543 0.44542503 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.134 11.967 2 0.00073819 2865 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 125.25 104.8 475990000 48579000 41218000 43485000 0 0 0 38675000 36192000 38632000 0 0 0 39536000 37427000 27856000 0 0 0 50246000 44050000 30094000 0 0 0 5296 793 5157 98745;98746;98747;98748;98749;98750;98751;98752;98753;98754;98755;98756 60496;60497;60498;60499;60500;60501;60502;60503;60504;60505 60504 10 EPVTEEEK Unmodified 959.44476 0.44475633 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.787 11.424 2 0.00076589 2761 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.08 116.41 1523800000 162260000 156580000 135410000 0 0 0 116930000 110880000 102550000 0 0 0 106730000 114990000 97848000 2107100 1846600 1886400 142490000 127710000 143560000 0 0 0 5297 793 5158 98757;98758;98759;98760;98761;98762;98763;98764;98765;98766;98767;98768;98769;98770;98771 60506;60507;60508;60509;60510;60511;60512;60513;60514;60515;60516;60517;60518;60519 60512 13 EPVTEEEKLFVAVCR Unmodified 1804.9029 0.90293508 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 34.047 34.069 3 0.014894 11450 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 54.276 50.174 11241000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4016700 2743700 4480900 0 0 0 0 0 0 5298 793 5159 98772;98773;98774 60520;60521 60520 0 EQAAAQESANLSSK Unmodified 1432.6794 0.67940073 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.2 12.965 2 8.0889E-35 3638 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 250.7 248.73 1202200000 88339000 82395000 91646000 0 0 0 97132000 89774000 88581000 0 0 0 108590000 91182000 90153000 0 883530 0 129790000 121520000 122200000 0 0 0 5299 59 5160 98775;98776;98777;98778;98779;98780;98781;98782;98783;98784;98785;98786;98787;98788;98789;98790;98791 60522;60523;60524;60525;60526;60527;60528;60529;60530;60531;60532;60533;60534;60535;60536;60537 60534 16 EQANVALMFLTGR Unmodified 1448.7446 0.74458394 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 51.478 50.275 2;3 1.2047E-12 24928 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 196.11 188.23 1099700000 184000000 187370000 168480000 8022600 7965700 7200800 85146000 80421000 79459000 7160600 7185600 7161300 46447000 37316000 42044000 3422700 1173100 2287100 46077000 44013000 41651000 1739000 2048600 1886500 5300 546 5161 98792;98793;98794;98795;98796;98797;98798;98799;98800;98801;98802;98803;98804;98805;98806;98807;98808;98809;98810;98811;98812;98813;98814;98815;98816;98817;98818;98819;98820;98821;98822;98823;98824;98825;98826;98827;98828;98829;98830;98831;98832 60538;60539;60540;60541;60542;60543;60544;60545;60546;60547;60548;60549;60550;60551;60552;60553;60554;60555;60556;60557 60542 17 EQARPAAQQSEDELLR Unmodified 1839.9075 0.90750318 711 P0ACA1 yibF Uncharacterized GST-like protein YibF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.991 18.502 3 6.4391E-14 6873 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 169.09 159.3 261350000 23838000 29636000 24407000 1645700 1226800 1491300 19573000 22735000 23960000 0 0 1767300 11984000 12328000 9338300 0 0 0 25169000 22209000 24267000 2268500 1397700 2108700 5301 711 5162 98833;98834;98835;98836;98837;98838;98839;98840;98841;98842;98843;98844;98845;98846;98847;98848;98849;98850;98851 60558;60559;60560;60561;60562;60563;60564;60565;60566 60563 9 EQAYQWVEEGK Unmodified 1365.6201 0.62009493 1981 Q93K97 nudF ADP-ribose pyrophosphatase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.517 26.369 2 1.9728E-07 12083 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.19 154.14 262430000 22405000 24342000 19334000 0 0 0 22583000 25008000 23813000 0 0 0 17927000 21181000 18907000 0 0 0 23760000 22690000 20480000 0 0 0 5302 1981 5163 98852;98853;98854;98855;98856;98857;98858;98859;98860;98861;98862;98863 60567;60568;60569;60570;60571;60572;60573;60574;60575;60576;60577 60573 11 EQCDLLVCGHHHSFINR Unmodified 2120.9633 0.9632607 584 P0AAB8 uspD Universal stress protein D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 4 4 4 3 3 3 4 4 4 3 2 3 3 2 2 2 2 3 2 3 1 20.105 20.378 2;3;4;5 2.4505E-19 8171 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 204.13 188.75 1867700000 124050000 137560000 131300000 15101000 13169000 13753000 385860000 332750000 370920000 15689000 8720700 13261000 71505000 39152000 52905000 0 0 0 45514000 38024000 46725000 4298500 5229900 2185000 5303 584 5164 98864;98865;98866;98867;98868;98869;98870;98871;98872;98873;98874;98875;98876;98877;98878;98879;98880;98881;98882;98883;98884;98885;98886;98887;98888;98889;98890;98891;98892;98893;98894;98895;98896;98897;98898;98899;98900;98901;98902;98903;98904;98905;98906;98907;98908;98909;98910;98911;98912;98913;98914;98915;98916;98917;98918;98919;98920;98921;98922;98923;98924 60578;60579;60580;60581;60582;60583;60584;60585;60586;60587;60588;60589;60590;60591;60592;60593;60594;60595;60596;60597;60598;60599;60600;60601;60602;60603;60604;60605;60606;60607;60608;60609;60610;60611;60612;60613;60614 60590 37 EQCETGAR Unmodified 949.39234 0.39234361 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 4.7569 5.6174 2 0.039273 1068 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 66.682 66.682 88892000 0 0 0 0 0 0 25064000 23594000 19599000 0 0 0 0 3509900 0 0 0 0 6621100 6199400 4304900 0 0 0 5304 278 5165 98925;98926;98927;98928;98929;98930;98931 60615 60615 0 EQCSAELLR Unmodified 1104.5234 0.52335778 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.592 19.085 2 0.00074014 6810 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 102.46 92.554 1334600000 106900000 113940000 86951000 0 0 570020 126750000 121390000 123250000 1278900 0 1031900 103640000 98703000 87201000 0 0 0 125150000 113870000 123960000 0 0 0 5305 902 5166 98932;98933;98934;98935;98936;98937;98938;98939;98940;98941;98942;98943;98944;98945;98946 60616;60617 60617 2 EQDAPITADQLLAPCDGER Unmodified 2097.9637 0.96369743 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 40.578 38.923 2;3 7.8718E-46 18748 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 267.47 264.52 6287600000 1648900000 1564000000 1418000000 2508500 1959200 1750000 277520000 290570000 294040000 0 0 0 122630000 106650000 102640000 0 0 0 146430000 159810000 150190000 0 0 0 5306 195 5167 98947;98948;98949;98950;98951;98952;98953;98954;98955;98956;98957;98958;98959;98960;98961;98962;98963;98964;98965;98966;98967;98968;98969;98970;98971;98972;98973;98974;98975;98976;98977;98978;98979 60618;60619;60620;60621;60622;60623;60624;60625;60626;60627;60628;60629;60630;60631;60632;60633;60634;60635 60627 18 EQDEEFIFALLNHAR Unmodified 1830.8901 0.89006221 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.075 51.653 3 2.2149E-06 25217 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.297 82.507 349140000 43030000 41451000 46342000 755020 1222800 1406400 24993000 29031000 23838000 0 0 0 21661000 19309000 22477000 0 0 0 22900000 25929000 24791000 0 0 0 5307 1387 5168 98980;98981;98982;98983;98984;98985;98986;98987;98988;98989;98990;98991;98992;98993;98994 60636;60637;60638 60638 3 EQDISTK Unmodified 819.39741 0.39741221 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 9.3104 10.129 2 0.0092255 2494 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.029 64.057 2206000000 364250000 353140000 282290000 0 0 0 24039000 27769000 30097000 0 0 0 92945000 96941000 67068000 0 0 0 298130000 278810000 290550000 0 0 0 5308 424 5169 98995;98996;98997;98998;98999;99000;99001;99002;99003;99004;99005;99006;99007 60639;60640;60641;60642;60643;60644;60645;60646;60647;60648;60649;60650;60651;60652;60653 60647 15 EQDSIIMDAATR Unmodified 1348.6293 0.62927941 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.066 28.652 2 0.00046606 13725 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.658 81.403 163170000 14484000 12591000 13345000 0 0 0 12969000 0 0 0 912560 766950 14668000 13865000 13550000 0 0 0 22317000 24381000 19316000 0 0 0 5309 1230 5170 99008;99009;99010;99011;99012;99013;99014;99015;99016;99017;99018;99019 60654 60654 1 EQEAAELK Unmodified 916.45018 0.45017606 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.807 12.462 2 0.054071 2683 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 58.917 45.929 353180000 37398000 31805000 34619000 898450 0 464980 22559000 18602000 16514000 0 3590500 3616400 38211000 29292000 34404000 6854100 5937800 6503800 18440000 21985000 21485000 0 0 0 5310 297 5171 99020;99021;99022;99023;99024;99025;99026;99027;99028;99029;99030;99031;99032;99033;99034;99035;99036;99037;99038 60655;60656;60657 60655 1 EQEAAELKR Unmodified 1072.5513 0.55128709 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 3 2 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 10.891 11.463 2;3 0.00029689 2342 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 126.52 114.75 1240700000 81589000 214150000 169190000 6822900 5231400 5271500 128040000 120270000 127200000 31614000 6719100 30736000 83638000 78509000 67537000 27263000 7754100 12817000 32430000 0 0 3874200 0 0 5311 297 5172 99039;99040;99041;99042;99043;99044;99045;99046;99047;99048;99049;99050;99051;99052;99053;99054;99055;99056;99057;99058;99059;99060;99061;99062;99063;99064 60658;60659;60660;60661;60662;60663 60659 3 EQESNLDLR Unmodified 1102.5255 0.52546627 629 P0AB52 ychN Protein YchN yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.659 17.417 2 0.00044306 6341 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.12 98.609 1294700000 124330000 115120000 132280000 0 0 0 151590000 157420000 149480000 0 0 0 67521000 63487000 78348000 0 0 0 89333000 91059000 74721000 0 0 0 5312 629 5173 99065;99066;99067;99068;99069;99070;99071;99072;99073;99074;99075;99076 60664;60665;60666;60667;60668;60669 60664 1 EQEVLAMGADK Unmodified 1189.5649 0.56488824 1296 P27250 ahr Aldehyde reductase Ahr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 21.987 22.034 2 0.00023848 9150 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 99.568 90.591 346120000 62824000 59877000 46500000 0 0 0 38688000 31187000 29748000 0 0 0 14215000 12359000 13138000 0 0 0 16515000 21071000 0 0 0 0 5313 1296 5174 99077;99078;99079;99080;99081;99082;99083;99084;99085;99086;99087 60670;60671;60672;60673;60674;60675;60676;60677;60678 60673 9 EQEVLVR Unmodified 871.47633 0.47633123 536 P0A9M0 lon Lon protease yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.999 15.86 2 0.0043665 5007 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 104.11 83.629 1045900000 76485000 70991000 62167000 2021300 1971600 1969800 0 111020000 117470000 0 0 0 93558000 88552000 100450000 0 0 0 119610000 100020000 99566000 0 0 0 5314 536 5175 99088;99089;99090;99091;99092;99093;99094;99095;99096;99097;99098;99099;99100;99101 60679 60679 1 EQEVYMGEIPLMTDNGTFVINGTER Oxidation (M) 2858.3103 0.31026004 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 1 51.748 50.882 3 1.6152E-30 19546 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 186.55 180.93 187140000 0 0 0 0 0 0 0 0 0 15660000 8785600 5445000 0 0 0 39810000 34647000 42588000 0 0 0 12018000 19114000 9073900 5315 463 5176 99102;99103;99104;99105;99106;99107;99108;99109;99110;99111;99112;99113;99114;99115;99116 60680;60681;60682;60683;60684;60685;60686;60687;60688;60689 60680 255;256 10 EQEVYMGEIPLMTDNGTFVINGTER Unmodified 2842.3153 0.31534542 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 3 2 3 1 2 1 3 2 3 1 2 3 3 3 54.371 53.277 2;3 1.0332E-71 21334 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 342.64 339.13 7090500000 0 4690800 12895000 0 0 0 0 0 0 178230000 145050000 172330000 5717400 8722400 6487300 1729700000 1962500000 1991300000 9106900 9846400 0 285450000 272370000 296170000 5316 463 5176 99117;99118;99119;99120;99121;99122;99123;99124;99125;99126;99127;99128;99129;99130;99131;99132;99133;99134;99135;99136;99137;99138;99139;99140;99141;99142;99143;99144;99145;99146;99147;99148;99149;99150;99151 60690;60691;60692;60693;60694;60695;60696;60697;60698;60699;60700;60701;60702;60703;60704;60705;60706;60707 60698 18 EQFGDKR Unmodified 878.42463 0.42463001 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 10.047 10.854 2 0.0052761 2393 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.76 86.997 119260000 23300000 19734000 16623000 0 0 0 4435300 7936400 0 0 0 0 6713300 6269600 0 0 0 0 10034000 9758100 14461000 0 0 0 5317 882 5177 99152;99153;99154;99155;99156;99157;99158;99159;99160;99161 60708;60709;60710;60711;60712 60711 5 EQFNELIAPLVK Unmodified 1399.7711 0.77111627 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.047 46.774 2 1.3543E-05 23085 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.4 123.19 754160000 38862000 43102000 38466000 0 1874800 1735500 56272000 75351000 64194000 7485000 7803200 8238500 66853000 73745000 68886000 3779700 2780500 2655400 63983000 61997000 54919000 3562300 4068500 3548400 5318 294 5178 99162;99163;99164;99165;99166;99167;99168;99169;99170;99171;99172;99173;99174;99175;99176;99177;99178;99179;99180;99181;99182;99183;99184 60713;60714;60715;60716;60717;60718;60719;60720;60721;60722;60723;60724;60725;60726;60727;60728;60729;60730 60718 18 EQFPQEQAER Unmodified 1260.5735 0.57347909 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.798 15.36 2 1.4608E-06 4930 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 164.68 160.75 372850000 71733000 67648000 58009000 906690 941870 0 56237000 60713000 53485000 947420 1139600 1087800 0 0 0 0 0 0 0 0 0 0 0 0 5319 757 5179 99185;99186;99187;99188;99189;99190;99191;99192;99193;99194;99195;99196 60731;60732;60733;60734;60735;60736;60737 60736 7 EQFSDGVGYSWIDTLK Unmodified 1843.8628 0.8628444 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 51.277 50.025 2 2.9454E-18 24572 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.66 182.22 389100000 53404000 43519000 40441000 0 0 0 72303000 77545000 58981000 0 0 0 7159900 7228400 6856400 0 0 0 11443000 0 10222000 0 0 0 5320 1191 5180 99197;99198;99199;99200;99201;99202;99203;99204;99205;99206;99207 60738 60738 1 EQGACPWFNETTYAK Unmodified 1800.7777 0.77773456 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.772 34.144 2 1.1812E-11 16586 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 171.32 171.32 1337600000 112790000 125920000 105560000 946750 749520 1038700 97482000 94690000 93914000 0 0 0 90313000 87414000 85374000 0 0 0 148630000 152200000 136260000 2127100 2250000 0 5321 29 5181 99208;99209;99210;99211;99212;99213;99214;99215;99216;99217;99218;99219;99220;99221;99222;99223;99224 60739;60740;60741;60742;60743;60744;60745;60746;60747;60748;60749;60750 60741 12 EQGAELWR Unmodified 987.47739 0.47739386 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.372 22.622 2 0.00039154 10018 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.78 134.21 1443800000 152270000 132130000 132280000 0 0 0 124850000 109000000 103870000 0 0 1774500 112710000 92433000 93262000 0 0 0 118760000 146870000 123530000 0 0 0 5322 1503 5182 99225;99226;99227;99228;99229;99230;99231;99232;99233;99234;99235;99236;99237 60751;60752;60753;60754;60755;60756;60757;60758;60759;60760;60761;60762 60752 12 EQGFNNVK Unmodified 934.45084 0.45084476 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 12.479 12.989 2 0.0052891 3095 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 86.866 77.278 35039000 0 5229800 0 0 0 0 0 0 4585800 4201300 3901100 3002400 4960600 0 0 0 0 0 6565500 0 0 0 1461300 1131400 5323 1932 5183 99238;99239;99240;99241;99242;99243;99244;99245;99246 60763;60764;60765 60763 3 EQGFYEK Unmodified 899.4025 0.40249759 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.351 14.208 2 0.028152 4112 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 68.915 59.674 8163800000 66914000 66556000 68084000 0 950540 1111100 789060000 722970000 611820000 0 0 0 659690000 616240000 597690000 0 0 0 1236000000 1345000000 1380700000 0 1022300 0 5324 993 5184 99247;99248;99249;99250;99251;99252;99253;99254;99255;99256;99257;99258;99259;99260;99261 60766;60767;60768;60769;60770;60771;60772 60772 7 EQGFYEKNPGADTATR Unmodified 1782.8173 0.81729119 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.894 15.366 3 0.0058167 3777 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 43.024 43.015 16763000 0 0 0 3103500 1794200 3166000 0 0 0 0 0 0 0 1176600 0 1879900 1454600 1408500 0 0 0 1281100 1498700 0 5325 993 5185 99262;99263;99264;99265;99266;99267;99268;99269;99270 60773;60774;60775 60774 3 EQGIAFPNDFR Unmodified 1292.6149 0.61494998 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.992 35.335 2 9.7393E-08 16964 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 173.37 169.8 3942600000 284200000 263610000 258160000 0 0 0 330460000 328320000 332760000 0 0 0 302410000 286700000 307060000 0 0 0 406220000 398570000 444160000 0 0 0 5326 448 5186 99271;99272;99273;99274;99275;99276;99277;99278;99279;99280;99281;99282 60776;60777;60778;60779;60780;60781;60782;60783;60784;60785;60786;60787 60783 12 EQGITIDVAYR Unmodified 1263.6459 0.64591575 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 33.397 32.062 2 0.00019694 15396 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.89 85.795 158030000 11034000 0 8285800 0 0 0 15557000 15568000 12348000 0 0 0 13588000 12166000 10695000 0 387570 0 17888000 21953000 18558000 0 0 0 5327 1218 5187 99283;99284;99285;99286;99287;99288;99289;99290;99291;99292;99293;99294;99295 60788;60789;60790;60791;60792;60793;60794;60795;60796;60797;60798;60799;60800;60801;60802;60803;60804;60805;60806 60796 19 EQGLHFYAAGHHATER Unmodified 1822.8499 0.84992872 959 P0AFP6 ybgI Putative GTP cyclohydrolase 1 type 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 3 3 3 2 2 1 3 3 3 1 1 3 3 3 3 3 3 12.606 13.433 2;3;4 6.461E-25 4117 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 263.9 243.44 1447400000 219450000 212740000 185360000 4501100 3779200 1227200 125610000 130560000 127330000 2318900 1564400 0 79972000 58225000 77176000 0 0 0 64980000 79720000 72930000 0 0 0 5328 959 5188 99296;99297;99298;99299;99300;99301;99302;99303;99304;99305;99306;99307;99308;99309;99310;99311;99312;99313;99314;99315;99316;99317;99318;99319;99320;99321;99322;99323;99324;99325;99326;99327;99328;99329;99330;99331;99332;99333;99334;99335;99336;99337;99338 60807;60808;60809;60810;60811;60812;60813;60814;60815;60816;60817;60818;60819;60820;60821 60815 14 EQGLLVGLASASPLHMLEK Unmodified 1992.0714 0.071397389 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 51.612 50.358 2;3 1.2606E-22 24347 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 192.4 180.35 919120000 55053000 48371000 42947000 0 0 0 79912000 94993000 74818000 0 0 0 86681000 75911000 80939000 0 0 0 94332000 88620000 96543000 0 0 0 5329 1889 5189 99339;99340;99341;99342;99343;99344;99345;99346;99347;99348;99349;99350;99351;99352;99353;99354;99355;99356;99357;99358;99359;99360 60822;60823;60824;60825;60826;60827;60828;60829;60830;60831;60832;60833;60834;60835 60829 14 EQGLNSENFVAFNLTER Unmodified 1966.9385 0.93846896 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 46.682 45.292 2;3 1.1466E-49 21916 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 273.3 267.58 976640000 141030000 126910000 109780000 0 0 0 70742000 62114000 58856000 0 0 0 54964000 56310000 47464000 0 0 0 84515000 89724000 74221000 0 0 0 5330 1195 5190 99361;99362;99363;99364;99365;99366;99367;99368;99369;99370;99371;99372;99373;99374;99375;99376;99377;99378;99379;99380;99381;99382;99383;99384 60836;60837;60838;60839;60840;60841;60842;60843;60844;60845;60846;60847;60848;60849;60850;60851;60852;60853;60854;60855;60856;60857 60850 22 EQGLPVR Unmodified 797.43955 0.43955179 1238 P24188 yceA UPF0176 protein YceA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.726 15.399 2 0.068585 5116 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 59.641 39.086 126850000 5094000 3650800 4221100 0 0 0 4689100 0 5009400 0 0 0 9305700 8762500 7283100 0 0 213270 25212000 26351000 26190000 0 865860 0 5331 1238 5191 99385;99386;99387;99388;99389;99390;99391;99392;99393;99394;99395;99396;99397 60858 60858 1 EQGLTPVLCIGETEAENEAGK Unmodified 2244.058 0.057991749 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.22 41.705 2;3 1.4642E-62 19606 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 271.79 269.48 5529700000 550960000 488210000 407670000 0 0 0 607380000 561350000 593740000 0 0 0 393290000 352930000 366250000 0 0 0 412230000 404900000 390800000 0 0 0 5332 399 5192 99398;99399;99400;99401;99402;99403;99404;99405;99406;99407;99408;99409;99410;99411;99412;99413;99414;99415;99416;99417;99418;99419;99420;99421 60859;60860;60861;60862;60863;60864;60865;60866;60867;60868;60869;60870;60871;60872;60873;60874;60875;60876;60877 60871 19 EQGLTPVLCIGETEAENEAGKTEEVCAR Unmodified 3089.4281 0.42814335 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 1 1 2 2 2 2 2 2 41.147 39.424 3;4 3.6416E-94 19273 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 247.13 240.97 11387000000 982240000 907040000 928220000 3956300 5898400 2838200 1332000000 1392600000 1176200000 0 2457200 1390300 788990000 717310000 733620000 0 0 0 775100000 793370000 843390000 0 0 0 5333 399 5193 99422;99423;99424;99425;99426;99427;99428;99429;99430;99431;99432;99433;99434;99435;99436;99437;99438;99439;99440;99441;99442;99443;99444;99445;99446;99447;99448;99449;99450;99451 60878;60879;60880;60881;60882;60883;60884;60885;60886;60887;60888;60889;60890;60891;60892;60893;60894;60895;60896;60897;60898;60899;60900;60901;60902;60903;60904 60893 27 EQGNESPLNIIACENMVR Unmodified 2072.9619 0.96192329 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 46.17 44.68 2;3 2.8288E-67 22074 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 305.51 299.54 629530000 46718000 44845000 44114000 0 0 0 82707000 74843000 75112000 0 0 0 50946000 50423000 52264000 0 0 0 37737000 35055000 34766000 0 0 0 5334 214 5194 99452;99453;99454;99455;99456;99457;99458;99459;99460;99461;99462;99463;99464;99465;99466;99467;99468;99469;99470;99471;99472;99473;99474;99475 60905;60906;60907;60908;60909;60910;60911;60912;60913;60914;60915;60916;60917;60918;60919;60920;60921;60922;60923 60909 19 EQGTPEIR Unmodified 928.46141 0.46140945 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.474 13.306 2 0.0050114 3885 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 87.323 63.35 2928800000 88893000 81940000 84167000 0 0 0 440400000 456760000 485040000 0 0 0 238390000 209560000 203960000 0 0 0 210340000 220030000 209340000 0 0 0 5335 257 5195 99476;99477;99478;99479;99480;99481;99482;99483;99484;99485;99486;99487 60924;60925;60926;60927;60928;60929;60930;60931;60932;60933 60924 10 EQGVNSHVEMAAAFHR Unmodified 1781.8268 0.82675044 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 19.149 19.757 3 0.012119 7476 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 43.297 42.472 66538000 16353000 16448000 17866000 0 0 0 0 0 0 0 0 0 0 3161100 0 0 0 0 5504100 3460500 3745400 0 0 0 5336 1107 5196 99488;99489;99490;99491;99492;99493;99494 60934;60935 60935 1 EQGYGEDNEEQEEGLR Unmodified 1880.766 0.76604348 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.045 18.581 2 1.0502E-50 7104 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 293.31 293.31 298890000 30740000 32564000 29046000 0 0 365860 25050000 24758000 22196000 0 0 0 21164000 13057000 17770000 0 895590 843560 25966000 26555000 27918000 0 0 0 5337 1845 5197 99495;99496;99497;99498;99499;99500;99501;99502;99503;99504;99505;99506;99507;99508;99509 60936;60937;60938;60939;60940;60941;60942;60943;60944;60945;60946 60936 11 EQGYMGLHTVGR Unmodified 1346.6401 0.64011887 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 19.189 19.743 2;3 2.5982E-12 7083 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 199.11 191.19 3352200000 281390000 229580000 221530000 452440 0 0 342820000 342220000 325290000 0 0 0 272700000 276740000 245910000 0 0 0 244550000 267600000 301420000 0 0 0 5338 1456 5198 99510;99511;99512;99513;99514;99515;99516;99517;99518;99519;99520;99521;99522;99523;99524;99525;99526;99527;99528;99529;99530;99531;99532;99533;99534 60947;60948;60949;60950;60951;60952;60953;60954;60955;60956;60957;60958;60959;60960;60961;60962 60962 16 EQGYVETLDGR Unmodified 1265.5888 0.58879481 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.898 22.441 2 0.00010091 9611 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.68 115.92 733790000 64988000 65153000 61705000 0 0 0 59695000 63950000 72274000 0 0 0 49267000 43560000 43039000 5155200 2721300 0 69985000 69257000 63043000 0 0 0 5339 37 5199 99535;99536;99537;99538;99539;99540;99541;99542;99543;99544;99545;99546;99547;99548 60963;60964;60965;60966;60967;60968;60969;60970;60971;60972;60973 60966 6 EQGYVETLDGRR Unmodified 1421.6899 0.68990583 37 P00582 polA DNA polymerase I yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 17.469 17.458 2 0.00012368 4975 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 94.692 80.485 7921500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5266800 1262400 1392300 0 0 0 0 0 0 5340 37 5200 99549;99550;99551 60974 60974 1 EQHEALK Unmodified 853.42938 0.42938104 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 10.364 10.486 2 0.00050088 1870 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 152.47 115.88 6486000000 0 0 0 0 0 0 0 0 0 992320000 802500000 767360000 0 0 0 1175500000 630550000 641550000 0 0 0 579300000 476290000 420610000 5341 1616 5201 99552;99553;99554;99555;99556;99557;99558;99559;99560 60975;60976;60977;60978;60979;60980;60981;60982;60983 60979 9 EQHEALKAQLEQGR Unmodified 1635.8329 0.83288168 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 13.158 13.314 3 8.5956E-07 3127 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 114.64 112.08 85903000 0 0 0 0 0 0 0 0 0 15608000 10417000 9953100 0 0 0 10013000 8327100 10916000 0 0 0 7650000 5974500 7044100 5342 1616 5202 99561;99562;99563;99564;99565;99566;99567;99568;99569 60984;60985;60986;60987;60988;60989;60990 60986 7 EQHEALKAQLEQGRDR Unmodified 1906.9609 0.96093574 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 12.368 12.512 3 0.0098134 2801 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 47.532 42.915 25761000 0 0 0 0 0 0 0 0 0 3011400 2711300 2734400 0 0 0 4629400 1534000 2413000 0 0 0 2591100 3467900 2668100 5343 1616 5203 99570;99571;99572;99573;99574;99575;99576;99577;99578 60991;60992;60993 60992 3 EQHVTIPAHQVNAEFFEEGK Unmodified 2309.1077 0.10765955 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 3 3 3 1 3 3 3 29.404 28.178 2;3;4 6.1972E-46 12949 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 302.84 301.2 4912200000 646410000 591480000 583680000 0 0 869080 362080000 333620000 343380000 0 0 0 317780000 301980000 247380000 0 954520 0 399330000 378780000 404500000 0 0 0 5344 508 5204 99579;99580;99581;99582;99583;99584;99585;99586;99587;99588;99589;99590;99591;99592;99593;99594;99595;99596;99597;99598;99599;99600;99601;99602;99603;99604;99605;99606;99607;99608;99609;99610;99611;99612;99613;99614;99615;99616 60994;60995;60996;60997;60998;60999;61000;61001;61002;61003;61004;61005;61006;61007;61008;61009;61010;61011;61012;61013;61014;61015;61016;61017;61018;61019;61020;61021;61022;61023;61024;61025;61026 61018 33 EQIIFPEIDYDK Unmodified 1508.7399 0.73987572 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.976 44.322 2 4.2258E-07 21750 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155.11 154.21 1632100000 270660000 278240000 227690000 1580300 1819800 1863700 55670000 45242000 46365000 5869800 5761800 5495100 102530000 101500000 94376000 0 0 0 111660000 133440000 124180000 5757300 5847800 6516300 5345 1644 5205 99617;99618;99619;99620;99621;99622;99623;99624;99625;99626;99627;99628;99629;99630;99631;99632;99633;99634;99635;99636;99637 61027;61028;61029;61030;61031;61032;61033;61034;61035;61036;61037;61038 61033 9 EQIIFPEIDYDKVDR Unmodified 1878.9363 0.9363437 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 2 2 2 41.927 40.348 2;3 1.2814E-11 14342 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 174.68 166.96 3344600000 102910000 107080000 80842000 59215000 56427000 54306000 0 0 157840000 166470000 170110000 149200000 0 296270000 265030000 109830000 119180000 92339000 462770000 471880000 81489000 118350000 113870000 109170000 5346 1644 5206 99638;99639;99640;99641;99642;99643;99644;99645;99646;99647;99648;99649;99650;99651;99652;99653;99654;99655;99656;99657;99658;99659;99660;99661;99662;99663;99664;99665;99666;99667;99668;99669;99670;99671;99672;99673;99674 61039;61040;61041;61042;61043;61044;61045;61046;61047;61048;61049;61050;61051;61052;61053;61054;61055;61056;61057;61058;61059;61060;61061;61062;61063 61044 25 EQIQNIE Unmodified 872.42396 0.42396131 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS 1 20.686 21.096 2 0.017277 8397 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 76.847 73.863 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5347 1215 5207 99675 61064 61064 1 EQITYVADRPGHDR Unmodified 1655.8016 0.80158155 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 12.806 13.647 2;3;4 9.379E-35 4108 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 272.59 257.32 2030800000 85333000 85094000 74116000 0 0 0 181040000 183770000 173160000 0 0 0 169890000 155780000 160820000 0 0 0 249390000 238730000 273720000 0 0 0 5348 1496 5208 99676;99677;99678;99679;99680;99681;99682;99683;99684;99685;99686;99687;99688;99689;99690;99691;99692;99693;99694;99695;99696;99697;99698;99699;99700;99701;99702;99703;99704;99705;99706;99707;99708;99709;99710;99711 61065;61066;61067;61068;61069;61070;61071;61072;61073;61074;61075;61076;61077;61078;61079;61080;61081;61082;61083;61084;61085;61086;61087;61088;61089;61090;61091;61092 61066 28 EQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPR Unmodified 4057.8699 0.86986321 211 P09372 grpE Protein GrpE yes yes 0 0 1 By MS/MS 1 40.167 37.264 4 0.054596 15092 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 34.937 31.638 3255000 0 0 0 0 0 0 0 0 0 3255000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5349 211 5209 99712 61093 61093 1 EQLAEVAAHWR Unmodified 1308.6575 0.65748349 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.627 26.479 2;3 5.412E-08 12097 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 196.99 176.05 863150000 68077000 65667000 53060000 0 0 0 107490000 97744000 99986000 0 0 0 56145000 52620000 49593000 0 0 0 77076000 70978000 64716000 0 0 0 5350 1778 5210 99713;99714;99715;99716;99717;99718;99719;99720;99721;99722;99723;99724;99725;99726;99727;99728;99729;99730;99731;99732;99733;99734;99735;99736 61094;61095;61096;61097;61098;61099;61100;61101;61102;61103;61104;61105;61106;61107;61108 61101 12 EQLAGWLGFASATR Unmodified 1505.7627 0.76267685 1069 P11447 argH Argininosuccinate lyase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 49.595 48.278 2 0.045046 23630 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 48.568 37.348 264890000 22830000 18002000 22097000 0 0 0 0 0 0 0 0 0 50182000 44419000 0 0 0 0 51499000 2169700 53696000 0 0 0 5351 1069 5211 99737;99738;99739;99740;99741;99742;99743;99744 61109;61110 61109 1 EQLEQAEWVDGR Unmodified 1458.6739 0.67392142 1770 P75779 ybiX PKHD-type hydroxylase YbiX yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 28.909 27.776 2 5.5273E-05 12357 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 106.4 90.51 54331000 0 0 0 0 0 0 0 0 0 0 0 0 7138200 6925400 6605800 0 0 0 11313000 10127000 12221000 0 0 0 5352 1770 5212 99745;99746;99747;99748;99749;99750 61111;61112 61112 2 EQLGLPSSDTEISDTCPAYDEEAR Unmodified 2682.1603 0.16028457 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 38.866 37.03 2;3 8.5609E-31 17925 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 223.76 223.76 562970000 23701000 14699000 20626000 0 0 0 58745000 55216000 54456000 6036100 7304900 6379900 53256000 43448000 45240000 0 0 0 56004000 57363000 57576000 1434400 1484100 0 5353 1468 5213 99751;99752;99753;99754;99755;99756;99757;99758;99759;99760;99761;99762;99763;99764;99765;99766;99767;99768;99769;99770;99771;99772;99773;99774;99775;99776;99777;99778;99779;99780;99781 61113;61114;61115;61116;61117;61118;61119;61120;61121;61122;61123;61124;61125;61126;61127;61128;61129;61130;61131;61132;61133;61134 61126 21 EQLGLSQQAVAER Unmodified 1427.7369 0.73685603 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.28 22.467 2 6.3733E-07 8029 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 113.38 100.42 326630000 0 13641000 14199000 4045200 4952700 3537000 38366000 36651000 0 0 10231000 6500600 0 24818000 24323000 0 0 0 44071000 43811000 45774000 5280700 0 6426700 5354 1304 5214 99782;99783;99784;99785;99786;99787;99788;99789;99790;99791;99792;99793;99794;99795;99796;99797;99798 61135;61136;61137;61138;61139;61140;61141;61142;61143;61144;61145;61146 61135 9 EQLIAAR Unmodified 799.4552 0.45520186 1515 P39199 prmB 50S ribosomal protein L3 glutamine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 2 2 2 2 3 2 2 2 2 2 3 3 2 1 3 3 1 1 2 1 17.856 18.171 2 0.0043665 5054 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 104.11 82.409 1057300000 62109000 62296000 62926000 6919600 8222100 1153200 92372000 111420000 91365000 22957000 18744000 18088000 85979000 94916000 88305000 2911300 0 2307600 106340000 13748000 78096000 5762200 11273000 9088900 5355 1515 5215 99799;99800;99801;99802;99803;99804;99805;99806;99807;99808;99809;99810;99811;99812;99813;99814;99815;99816;99817;99818;99819;99820;99821;99822;99823;99824;99825;99826;99827;99828;99829;99830;99831;99832;99833;99834;99835;99836;99837;99838;99839;99840;99841;99842;99843 61147;61148;61149;61150;61151;61152;61153;61154;61155;61156;61157;61158;61159;61160;61161 61159 15 EQLLEVGDFLK Unmodified 1289.6867 0.68671794 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.017 48.781 2 2.2775E-05 23674 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.59 119.93 1456000000 54458000 44068000 51034000 11709000 13532000 13420000 99853000 91104000 96443000 50310000 38559000 42451000 102010000 95603000 90086000 15117000 11955000 13142000 149160000 136680000 135490000 33858000 34388000 31619000 5356 1426 5216 99844;99845;99846;99847;99848;99849;99850;99851;99852;99853;99854;99855;99856;99857;99858;99859;99860;99861;99862;99863;99864;99865;99866;99867 61162;61163;61164;61165;61166;61167;61168;61169;61170;61171;61172;61173;61174;61175;61176;61177;61178;61179;61180;61181;61182;61183;61184 61175 23 EQLLEVGDFLKK Unmodified 1417.7817 0.78168095 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 1 1 2 2 2 1 1 1 1 1 1 1 2 2 40.925 38.972 2;3 0.0051128 15234 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 51.875 44.836 116280000 2962900 2666100 0 3395100 2279200 2681100 5273400 3750300 2674700 12830000 12949000 11716000 2914200 4139900 2931900 0 0 0 5036600 3324400 5950500 7861700 8466700 12478000 5357 1426 5217 99868;99869;99870;99871;99872;99873;99874;99875;99876;99877;99878;99879;99880;99881;99882;99883;99884;99885;99886;99887;99888;99889;99890;99891;99892;99893;99894 61185;61186;61187;61188;61189 61188 3 EQLLNHVWGTNVYVEDR Unmodified 2071.0123 0.012302606 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 2 2 2 2 1 2 38.369 36.834 2;3 8.2154E-50 18305 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 321.81 310.23 1073400000 0 0 0 1060600 982600 0 26809000 27101000 20528000 0 0 0 163360000 14905000 14257000 12950000 8813600 10219000 277560000 247520000 224120000 8424100 6627800 8145300 5358 946 5218 99895;99896;99897;99898;99899;99900;99901;99902;99903;99904;99905;99906;99907;99908;99909;99910;99911;99912;99913;99914;99915;99916;99917 61190;61191;61192;61193;61194;61195;61196;61197;61198;61199;61200;61201;61202;61203 61191 13 EQLPELILQATK Unmodified 1381.7817 0.78168095 1737 P69506 ytfE Iron-sulfur cluster repair protein YtfE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.282 45.892 2 5.4462E-05 22891 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.62 93.527 119770000 9240500 8853000 8847500 0 0 0 17822000 16155000 14121000 0 0 0 6970800 7270300 5159300 0 0 0 6040200 10478000 8810400 0 0 0 5359 1737 5219 99918;99919;99920;99921;99922;99923;99924;99925;99926;99927;99928;99929 61204;61205;61206;61207 61204 4 EQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLR Unmodified 3886.9701 0.97011003 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1 2 4 4 3 1 2 1 3 4 3 4 2 3 1 48.374 46.925 3;4;5 3.5348E-38 22815 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 200.58 199.03 923420000 56129000 46532000 26787000 5549300 5130000 5614600 154970000 157570000 88982000 9682800 11666000 10187000 52149000 60596000 52289000 0 0 0 72464000 43298000 60008000 0 3825600 0 5360 1046 5220 99930;99931;99932;99933;99934;99935;99936;99937;99938;99939;99940;99941;99942;99943;99944;99945;99946;99947;99948;99949;99950;99951;99952;99953;99954;99955;99956;99957;99958;99959;99960;99961;99962;99963;99964;99965;99966;99967;99968;99969;99970;99971;99972;99973;99974;99975;99976;99977 61208;61209;61210;61211;61212;61213;61214;61215;61216;61217;61218;61219;61220;61221;61222;61223;61224;61225;61226;61227 61211 19 EQLTEQLNCYLDLMR Unmodified 1924.9023 0.90228315 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.144 52.71 2 0.00030305 26087 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 79.492 73.647 74959000 0 4369200 6539500 0 0 0 6437000 7668300 0 0 2415500 0 8294100 5663000 7551900 0 0 0 9460600 7943300 8616500 0 0 0 5361 324 5221 99978;99979;99980;99981;99982;99983;99984;99985;99986;99987;99988 61228 61228 0 EQMLELLQQR Unmodified 1286.6653 0.66527099 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 39.7 38.121 2;3 8.6911E-09 18371 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 161.02 146.35 382960000 0 0 27945000 4065700 793720 631730 48316000 3072000 0 37829000 41553000 36532000 26755000 42258000 26336000 4485300 2244600 2135400 35019000 36997000 2590600 1095600 995820 1308700 5362 122 5222 99989;99990;99991;99992;99993;99994;99995;99996;99997;99998;99999;100000;100001;100002;100003;100004;100005;100006;100007;100008;100009;100010;100011;100012;100013;100014;100015;100016;100017;100018;100019;100020 61229;61230;61231;61232;61233;61234;61235;61236;61237;61238;61239;61240;61241;61242;61243 61237 15 EQMSAAGFTLAGADHAIIPVMLGDAVVAQK Unmodified 3010.5256 0.52561297 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.275 52.826 3 2.361E-16 26097 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 136.14 135.73 1705700000 140810000 147940000 149160000 0 0 0 126620000 104640000 122950000 0 0 0 129370000 149220000 153130000 0 0 0 174370000 155050000 152440000 0 0 0 5363 635 5223 100021;100022;100023;100024;100025;100026;100027;100028;100029;100030;100031;100032 61244;61245;61246;61247;61248;61249;61250;61251;61252;61253;61254;61255 61246 12 EQNPQSQLK Unmodified 1070.5356 0.53563702 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 11.583 11.789 2 0.0018627 2601 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 87.181 83.435 10366000 2538500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3886600 3941100 0 0 0 0 0 0 5364 36 5224 100033;100034;100035 61256 61256 1 EQPCDNVPATRPTVK Unmodified 1710.8359 0.83591814 1091 P13482 treA Periplasmic trehalase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 1 1 2 2 2 14.111 14.936 2;3 2.9365E-08 4777 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.99 137.93 592780000 113390000 105800000 111410000 0 0 0 47263000 48118000 44454000 0 0 0 17515000 16644000 14553000 0 0 0 21513000 27416000 24717000 0 0 0 5365 1091 5225 100036;100037;100038;100039;100040;100041;100042;100043;100044;100045;100046;100047;100048;100049;100050;100051;100052;100053;100054;100055;100056;100057 61257;61258;61259;61260;61261;61262;61263;61264;61265;61266 61265 10 EQPEGIAPTWTVSSLHELEQLLCK Unmodified 2764.3742 0.37418093 471 P0A8Y1 yjjG Pyrimidine 5'-nucleotidase YjjG yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 54.975 53.573 3 4.1426E-05 26210 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 85.376 79.387 110290000 10727000 4948400 0 0 0 0 0 0 0 0 0 0 22696000 19895000 21266000 0 0 0 0 0 30756000 0 0 0 5366 471 5226 100058;100059;100060;100061;100062;100063 61267 61267 1 EQPEHLR Unmodified 907.45118 0.45117911 676 P0ABS8 holE DNA polymerase III subunit theta yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 10.46 11.179 2 0.11664 2565 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 50.855 42.515 22649000 13810000 0 0 0 0 0 5730800 0 3108800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5367 676 5227 100064;100065;100066 61268 61268 1 EQQGELTSTWDLMLQTR Unmodified 2034.9681 0.96805453 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 51.5 50.206 2;3 1.8293E-06 18180 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 125.61 125.61 22018000 0 0 0 6537600 7149000 6851100 0 0 0 0 1480200 0 0 0 0 0 0 0 0 0 0 0 0 0 5368 151 5228 100067;100068;100069;100070;100071;100072;100073 61269;61270;61271;61272;61273 61272 5 EQQGFCEGR Unmodified 1109.456 0.45600649 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.373 12.921 2 1.5326E-05 3703 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.46 150.69 1585600000 75114000 81379000 70125000 0 0 0 162520000 143750000 123300000 1821700 1337400 1900300 152350000 158460000 147570000 3970400 3129000 3217200 153650000 143790000 152180000 2470000 1688200 1862700 5369 288 5229 100074;100075;100076;100077;100078;100079;100080;100081;100082;100083;100084;100085;100086;100087;100088;100089;100090;100091;100092;100093;100094 61274;61275;61276;61277;61278;61279;61280;61281;61282;61283;61284;61285;61286;61287;61288 61280 15 EQQHGLFK Unmodified 985.49813 0.49812931 1848 P76291 cmoB tRNA (mo5U34)-methyltransferase yes yes 0 0 0 By MS/MS 1 12.344 13.046 2 0.019601 3800 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 70.69 48.919 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5370 1848 5230 100095 61289 61289 1 EQQLLAEAR Unmodified 1056.5564 0.55637247 682 P0ABU7 exbB Biopolymer transport protein ExbB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.947 19.322 2 0.00012566 7304 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.05 109.53 302430000 14532000 12070000 10126000 4748100 4908400 5024400 21199000 17843000 18239000 7819100 6839200 6761900 16964000 14698000 16605000 0 0 0 36082000 33626000 34119000 6641300 7543600 6044700 5371 682 5231 100096;100097;100098;100099;100100;100101;100102;100103;100104;100105;100106;100107;100108;100109;100110;100111;100112;100113;100114;100115;100116 61290;61291;61292;61293;61294;61295;61296;61297;61298;61299;61300;61301;61302;61303;61304;61305;61306;61307;61308;61309;61310 61301 15 EQQNGWQER Unmodified 1173.5163 0.51629857 909 P0AF36 zapB Cell division protein ZapB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.41 13.03 2 0.00014884 3729 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.03 131.03 837910000 62920000 62539000 54753000 0 1155500 0 78767000 71149000 74041000 2369700 2684700 2161700 72947000 66870000 69947000 1854300 1296800 981760 68399000 68594000 74478000 0 0 0 5372 909 5232 100117;100118;100119;100120;100121;100122;100123;100124;100125;100126;100127;100128;100129;100130;100131;100132;100133;100134;100135 61311;61312;61313;61314;61315;61316;61317;61318;61319;61320;61321;61322;61323;61324 61313 13 EQQQDVISR Unmodified 1101.5415 0.54145068 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By MS/MS By MS/MS 1 1 12.23 13.264 2 0.013903 3566 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 68.371 44.602 7272800 0 0 0 0 0 0 0 0 0 0 0 0 0 5575800 1697000 0 0 0 0 0 0 0 0 0 5373 1559 5233 100136;100137 61325;61326 61326 0 EQQQDVITR Unmodified 1115.5571 0.55710075 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.749 13.366 2 8.9731E-05 3842 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.78 108.62 7157300000 213670000 224330000 235410000 6501900 0 5815100 912240000 805590000 712490000 17715000 14477000 13678000 742970000 716250000 679300000 3796700 5277700 0 636600000 591920000 585170000 11855000 12325000 9936600 5374 212 5234 100138;100139;100140;100141;100142;100143;100144;100145;100146;100147;100148;100149;100150;100151;100152;100153;100154;100155;100156;100157;100158;100159;100160 61327;61328;61329;61330;61331;61332;61333;61334;61335;61336;61337;61338;61339;61340;61341;61342;61343;61344;61345;61346;61347 61334 21 EQQTSTFLGNGIAIPHGTTDTR Unmodified 2343.1455 0.14550162 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.221 33.581 3 0.035878 15980 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 38.933 31.572 154520000 0 11203000 9738700 4532300 4295300 3564700 13704000 13455000 12961000 0 0 3717800 12794000 12701000 9730400 0 0 0 0 19172000 16347000 2262700 2019200 2318500 5375 1748 5235 100161;100162;100163;100164;100165;100166;100167;100168;100169;100170;100171;100172;100173;100174;100175;100176;100177 61348;61349;61350 61348 3 EQSKPVTIVGLQPEEGSSIPGIR Unmodified 2420.2911 0.29110323 1133 P16703 cysM Cysteine synthase B yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 38.839 37.165 2;3 1.696E-15 17939 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 150.91 150.43 1493800000 112180000 102840000 102230000 0 0 0 107970000 118610000 110350000 0 0 0 132110000 123270000 132740000 0 0 0 136700000 156980000 157860000 0 0 0 5376 1133 5236 100178;100179;100180;100181;100182;100183;100184;100185;100186;100187;100188;100189;100190;100191;100192;100193;100194;100195;100196;100197;100198;100199;100200;100201 61351;61352;61353;61354;61355;61356;61357;61358;61359;61360;61361 61355 9 EQTEGELQFR Unmodified 1235.5782 0.57823012 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 22.494 21.932 2 0.00019255 8833 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 121.96 90.584 41956000 0 0 0 0 0 0 4278800 0 3491700 0 0 0 5407200 5008500 5429300 0 0 0 4824900 6423100 7092600 0 0 0 5377 193 5237 100202;100203;100204;100205;100206;100207;100208;100209 61362;61363 61363 2 EQTEWHR Unmodified 984.44134 0.44134271 1010 P0AGE0 ssb Single-stranded DNA-binding protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 11.358 11.833 2 0.00097355 2983 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.92 135.56 233320000 0 100960000 0 0 0 0 0 0 0 2165500 1671900 2036100 27173000 25414000 22623000 3983500 0 1623400 0 44206000 0 0 1465700 0 5378 1010 5238 100210;100211;100212;100213;100214;100215;100216;100217;100218;100219;100220 61364;61365 61365 2 EQTPEKETEVQNEQPVVEEIVQAQEPVK Unmodified 3233.5939 0.59394635 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.06 37.219 3 5.6827E-25 17988 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 180.26 179.63 257320000 16407000 14659000 17052000 734730 0 1661500 20518000 20701000 15493000 7465700 7048600 4992800 17279000 17421000 12162000 0 0 0 30890000 23925000 22608000 0 0 6297100 5379 1052 5239 100221;100222;100223;100224;100225;100226;100227;100228;100229;100230;100231;100232;100233;100234;100235;100236;100237;100238 61366;61367;61368;61369;61370;61371;61372;61373;61374;61375;61376;61377;61378 61374 13 EQTQAAVSLLEK Unmodified 1315.6983 0.69834526 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.549 27.277 2 2.7841E-05 11922 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 116.77 60.508 940690000 65306000 58509000 57977000 997290 940030 0 68490000 75708000 65013000 7928000 4327000 4883200 81954000 71196000 78764000 8609400 6168600 6141300 85342000 93690000 80699000 6279900 5380100 6389100 5380 124 5240 100239;100240;100241;100242;100243;100244;100245;100246;100247;100248;100249;100250;100251;100252;100253;100254;100255;100256;100257;100258;100259;100260;100261 61379;61380;61381;61382;61383;61384;61385;61386;61387;61388;61389;61390;61391;61392;61393;61394;61395;61396 61396 18 EQVAYYK Unmodified 899.43888 0.43888309 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 2 2 2 13.894 14.56 1;2 0.011643 3347 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 97.602 88.919 4613200000 226660000 243400000 213640000 329440000 322020000 337420000 279720000 256630000 241490000 1771200 1634300 1513300 154500000 161870000 142400000 10567000 2237900 1298800 230310000 258000000 231650000 342750000 312490000 309780000 5381 939 5241 100262;100263;100264;100265;100266;100267;100268;100269;100270;100271;100272;100273;100274;100275;100276;100277;100278;100279;100280;100281;100282;100283;100284;100285;100286;100287;100288;100289;100290;100291;100292;100293;100294;100295;100296;100297;100298;100299;100300;100301;100302;100303;100304 61397;61398;61399;61400;61401;61402;61403;61404;61405;61406;61407;61408;61409;61410;61411;61412;61413;61414;61415 61410 19 EQVAYYKEDEK Unmodified 1400.646 0.64597533 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 12.489 13.118 2;3 1.7882E-19 3813 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 233.84 233.19 6420700000 140340000 156290000 167800000 545030000 577010000 563370000 232110000 209160000 196470000 76448000 68085000 72407000 121350000 115500000 131080000 25262000 23183000 26887000 175020000 168030000 194540000 743280000 828350000 863640000 5382 939 5242 100305;100306;100307;100308;100309;100310;100311;100312;100313;100314;100315;100316;100317;100318;100319;100320;100321;100322;100323;100324;100325;100326;100327;100328;100329;100330;100331;100332;100333;100334;100335;100336;100337;100338;100339;100340;100341;100342;100343;100344;100345;100346;100347;100348;100349;100350;100351 61416;61417;61418;61419;61420;61421;61422;61423;61424;61425;61426;61427;61428;61429;61430;61431;61432;61433;61434;61435;61436;61437;61438;61439;61440;61441;61442;61443;61444;61445;61446;61447;61448;61449;61450;61451;61452;61453;61454;61455;61456 61435 41 EQVEMIEER Unmodified 1161.5336 0.53358811 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.215 20.457 2 0.00049651 7918 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 108.74 104.54 146020000 18200000 17159000 13297000 726600 0 558710 12033000 12300000 10682000 2681400 1995600 2248000 3532700 3199900 4251200 0 0 0 13909000 16097000 13150000 0 0 0 5383 1691 5243 100352;100353;100354;100355;100356;100357;100358;100359;100360;100361;100362;100363;100364;100365;100366;100367;100368 61457;61458;61459;61460;61461;61462;61463;61464 61463 6 EQVGDDK Unmodified 789.35046 0.35046202 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 4.8243 5.7106 2 0.023476 1110 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 73.637 32.135 437620000 0 0 0 0 0 0 0 39836000 37729000 0 0 0 69923000 57835000 65084000 0 0 0 58233000 58053000 50924000 0 0 0 5384 86 5244 100369;100370;100371;100372;100373;100374;100375;100376 61465;61466 61466 2 EQVGDDKVILGLSGGVDSSVTAMLLHR Unmodified 2795.4487 0.44874286 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 51.546 50.296 3;4 1.7307E-22 24320 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 160.67 159.77 662860000 50642000 42091000 38972000 0 0 0 48205000 45638000 36344000 0 0 0 70205000 62962000 56821000 0 0 0 71394000 57168000 82416000 0 0 0 5385 86 5245 100377;100378;100379;100380;100381;100382;100383;100384;100385;100386;100387;100388;100389;100390;100391;100392;100393;100394;100395;100396;100397;100398;100399 61467;61468;61469;61470;61471;61472;61473;61474;61475;61476 61473 10 EQVGDEHIGVIPEDCYYK Unmodified 2149.9626 0.9626348 425 P0A8F4 udk Uridine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 2 2 2 1 1 2 2 2 1 1 32.356 31.033 2;3 1.5245E-09 14627 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.65 151.7 651620000 39165000 48405000 52909000 1320800 0 1181200 45156000 55780000 49829000 0 0 4943300 49598000 44108000 40213000 0 1631700 1955200 70897000 64274000 72480000 4144100 3629500 0 5386 425 5246 100400;100401;100402;100403;100404;100405;100406;100407;100408;100409;100410;100411;100412;100413;100414;100415;100416;100417;100418;100419;100420;100421;100422;100423;100424;100425;100426;100427;100428;100429;100430 61477;61478;61479;61480;61481;61482;61483;61484;61485;61486;61487;61488;61489;61490 61483 14 EQVGDEHIGVIPEDCYYKDQSHLSMEER Unmodified 3362.482 0.48196983 425 P0A8F4 udk Uridine kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.872 29.44 5 1.8431E-05 11199 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 70.451 70.451 104170000 0 0 0 4592800 4897200 3244200 0 0 0 13370000 16725000 17773000 0 0 0 4686400 5154700 6344500 0 0 0 8068700 10649000 8661000 5387 425 5247 100431;100432;100433;100434;100435;100436;100437;100438;100439;100440;100441;100442 61491;61492;61493;61494;61495;61496;61497;61498;61499;61500;61501 61495 11 EQVLEIVAEEAK Unmodified 1356.7137 0.71366097 259 P0A6L4 nanA N-acetylneuraminate lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 39.823 38.24 3 0.14559 18596 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 30.468 25.174 37866000 4255000 5712400 3302400 0 0 0 6357300 0 0 0 0 0 4060700 2916000 4297800 0 0 0 2950900 2201500 1811700 0 0 0 5388 259 5248 100443;100444;100445;100446;100447;100448;100449;100450;100451;100452 61502 61502 0 EQVPAGEFQIMSAGTGIR Unmodified 1889.9305 0.93054681 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.67 40.967 2 8.5698E-07 20445 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.287 85.488 106370000 17368000 15310000 10845000 2927900 2693000 3317200 7616400 8418800 6358200 0 0 0 5186600 5266000 3859200 0 0 0 5810400 6286200 5103300 0 0 0 5389 1587 5249 100453;100454;100455;100456;100457;100458;100459;100460;100461;100462;100463;100464;100465;100466;100467 61503;61504;61505;61506;61507;61508;61509;61510;61511;61512;61513 61503 6 EQVQAMQHLR Unmodified 1238.619 0.6189895 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 13.312 14.178 2;3 1.6668E-05 4367 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.04 140.8 354260000 23561000 22409000 24277000 0 0 0 34045000 25339000 22106000 0 0 0 31370000 27489000 26324000 0 0 0 40711000 37331000 39298000 0 0 0 5390 1148 5250 100468;100469;100470;100471;100472;100473;100474;100475;100476;100477;100478;100479;100480;100481;100482;100483;100484;100485;100486;100487;100488;100489;100490;100491 61514;61515;61516;61517;61518;61519;61520;61521 61520 8 EQVQASLENMAK Unmodified 1346.65 0.65001485 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.012 24.023 2 1.0312E-06 10606 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 185.6 179.01 961980000 185540000 179120000 163660000 0 0 0 53845000 57690000 48551000 0 0 0 34174000 28751000 30159000 0 0 0 59446000 58518000 62528000 0 0 0 5391 1465 5251 100492;100493;100494;100495;100496;100497;100498;100499;100500;100501;100502;100503 61522;61523;61524;61525;61526;61527;61528;61529;61530;61531;61532;61533 61527 12 EQVQQALNAR Unmodified 1155.5996 0.59963426 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.042 15.675 2 8.3409E-05 5235 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 153.04 128.11 2470800000 161980000 204530000 177710000 1513100 1635900 1503600 233660000 214670000 191100000 2542000 3116800 3337200 181030000 168800000 172880000 0 0 0 260540000 244350000 240090000 1643400 2052700 2103100 5392 183 5252 100504;100505;100506;100507;100508;100509;100510;100511;100512;100513;100514;100515;100516;100517;100518;100519;100520;100521;100522;100523;100524 61534;61535;61536;61537;61538;61539;61540;61541;61542;61543;61544;61545;61546;61547 61536 14 EQVQSMGAEFLELDFKEEAGSGDGYAK Unmodified 2934.3229 0.32293322 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.12 47.666 3 2.4465E-16 19061 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 152.35 151.53 79449000 0 0 0 0 0 0 9143500 6243400 6404200 7685500 7776300 0 6891300 5314600 6785200 0 0 0 6439100 6577700 6716700 3471000 0 0 5393 146 5253 100525;100526;100527;100528;100529;100530;100531;100532;100533;100534;100535;100536 61548;61549 61549 2 EQVVALANLLR Unmodified 1224.719 0.71902112 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.879 45.489 2 3.2006E-06 22139 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.49 145.53 85199000 2950900 4391900 2538300 0 0 0 4247200 4808700 5039400 0 0 0 10287000 7368000 8526500 0 0 0 11844000 9489400 13708000 0 0 0 5394 1070 5254 100537;100538;100539;100540;100541;100542;100543;100544;100545;100546;100547;100548 61550;61551;61552;61553;61554;61555;61556;61557 61553 5 EQYGDDQVK Unmodified 1080.4724 0.47236807 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.678 12.372 2 0.0010569 3391 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.302 93.778 1490700000 51696000 58160000 58244000 20052000 24096000 28087000 34850000 41950000 39161000 155730000 155650000 157670000 47078000 36798000 38999000 0 0 0 47149000 49321000 43449000 117670000 143770000 141150000 5395 128 5255 100549;100550;100551;100552;100553;100554;100555;100556;100557;100558;100559;100560;100561;100562;100563;100564;100565;100566;100567;100568;100569 61558;61559;61560;61561;61562;61563;61564;61565;61566 61562 9 EQYGFQLLHLTCCR Unmodified 1823.8447 0.84470869 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 2 2 2 1 2 2 2 40.935 39.253 2;3 7.3694E-11 19202 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 181.66 179.91 271620000 35533000 5057400 21283000 0 1629700 0 26406000 21107000 23949000 0 0 0 16917000 15124000 13352000 0 0 0 32432000 30045000 28790000 0 0 0 5396 806 5256 100570;100571;100572;100573;100574;100575;100576;100577;100578;100579;100580;100581;100582;100583;100584;100585;100586;100587;100588;100589;100590 61567;61568;61569;61570;61571;61572 61571 6 EQYLAELAQHEQEGK Unmodified 1771.8377 0.83769228 1840 P76243 yeaO Uncharacterized protein YeaO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 27.797 26.697 2;3 3.5188E-20 12228 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 247.67 247.67 344550000 48007000 49847000 47655000 0 0 0 0 41120000 41413000 0 0 0 20279000 18030000 18632000 0 0 0 16798000 21615000 21151000 0 0 0 5397 1840 5257 100591;100592;100593;100594;100595;100596;100597;100598;100599;100600;100601;100602;100603;100604;100605;100606;100607;100608;100609;100610 61573;61574;61575;61576;61577;61578;61579;61580;61581;61582;61583;61584 61579 12 EQYLAELAQHEQEGKR Unmodified 1927.9388 0.93880331 1840 P76243 yeaO Uncharacterized protein YeaO yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 22.577 22.183 4 9.8632E-05 9402 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.376 71.408 50243000 10095000 9271900 9317200 0 0 0 0 0 0 0 0 0 4704500 6028300 0 0 0 0 6586200 4240100 0 0 0 0 5398 1840 5258 100611;100612;100613;100614;100615;100616;100617 61585 61585 1 ERAEDEAINVFAR Unmodified 1518.7427 0.74266969 1586 P46837 yhgF Protein YhgF yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 1 1 2 2 2 2 1 28.946 27.494 2;3 7.8272E-18 12687 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 251.75 226.28 431570000 26328000 25813000 21856000 0 0 0 38587000 42691000 39710000 1902000 928190 1186200 22014000 28411000 35694000 0 0 0 48050000 48527000 48975000 0 0 901560 5399 1586 5259 100618;100619;100620;100621;100622;100623;100624;100625;100626;100627;100628;100629;100630;100631;100632;100633;100634;100635;100636;100637;100638;100639;100640 61586;61587;61588;61589;61590;61591;61592;61593;61594;61595;61596;61597;61598;61599 61590 14 ERAGFEVR Unmodified 962.49338 0.49337828 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 13.08 13.247 2 0.00059513 3075 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 144.5 118.76 1820000000 0 0 0 0 0 0 0 0 0 148000000 101100000 119380000 0 0 0 528220000 226790000 253270000 0 0 0 150170000 144260000 148830000 5400 463 5260 100641;100642;100643;100644;100645;100646;100647;100648;100649 61600;61601;61602;61603;61604;61605;61606;61607;61608;61609 61600 10 ERAPELMIDGEMHGDAALVEAIR Unmodified 2522.2257 0.22574255 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 2 2 2 1 2 42.363 40.697 3;4 3.9039E-10 19994 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.41 119.57 287230000 42528000 52212000 35665000 0 0 0 13082000 20882000 16180000 0 0 0 11053000 19573000 17223000 0 0 0 23971000 8274100 26588000 0 0 0 5401 1872 5261 100650;100651;100652;100653;100654;100655;100656;100657;100658;100659;100660;100661;100662;100663;100664;100665;100666;100667;100668;100669 61610;61611;61612;61613;61614;61615;61616;61617;61618 61614 9 ERDGILR Unmodified 857.47191 0.47191456 211 P09372 grpE Protein GrpE yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.16 12.774 2 0.0017892 2995 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 138.26 67.12 1845900000 126940000 139600000 145750000 5672500 7043900 5713700 159050000 156610000 136320000 36554000 25918000 32662000 136270000 105240000 113770000 5227600 1584200 1999900 156580000 156010000 164710000 9288100 8720600 8636900 5402 211 5262 100670;100671;100672;100673;100674;100675;100676;100677;100678;100679;100680;100681;100682;100683;100684;100685;100686;100687;100688;100689;100690;100691;100692;100693 61619;61620;61621;61622;61623;61624;61625 61620 7 EREAGEGFGDFTVR Unmodified 1568.7219 0.72193424 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 1 2 2 2 27.269 26.073 2;3 1.2675E-07 11891 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.93 119.88 310120000 36144000 33761000 27863000 0 0 0 18870000 23710000 23913000 0 1458000 0 22503000 21239000 12942000 0 0 0 29129000 30161000 28429000 0 0 0 5403 1143 5263 100694;100695;100696;100697;100698;100699;100700;100701;100702;100703;100704;100705;100706;100707;100708;100709;100710;100711;100712;100713;100714;100715;100716;100717 61626;61627 61627 1 EREDLAR Unmodified 887.44609 0.44609374 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 9.2733 9.9586 2 0.00039586 2046 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 163.67 89.254 327960000 37916000 34541000 34843000 9546100 10921000 8477200 4098900 4906700 5755600 14451000 12145000 13937000 20792000 0 11186000 0 0 0 23621000 24099000 28498000 7724000 10008000 10488000 5404 956 5264 100718;100719;100720;100721;100722;100723;100724;100725;100726;100727;100728;100729;100730;100731;100732;100733;100734;100735;100736;100737;100738 61628;61629;61630;61631;61632;61633;61634;61635;61636 61629 9 EREELAVINDQFGAPTGAELLADCTAHAIR Unmodified 3266.599 0.59898892 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 1 1 2 2 2 46.837 45.406 3;4 1.9975E-31 22069 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 182.4 177.91 749740000 34564000 32397000 37176000 0 0 0 80124000 80801000 91791000 0 0 0 11663000 8522300 8699400 0 0 0 139150000 123500000 101350000 0 0 0 5405 1497 5265 100739;100740;100741;100742;100743;100744;100745;100746;100747;100748;100749;100750;100751;100752;100753;100754;100755;100756;100757 61637;61638;61639;61640;61641;61642;61643;61644;61645;61646 61642 10 ERELFDLIK Unmodified 1161.6394 0.63937381 1624 P60595 hisH Imidazole glycerol phosphate synthase subunit HisH yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 36.49 34.919 3 4.8539E-05 16698 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.73 90.311 64095000 5744200 6190800 7109000 0 0 0 3991600 4259800 7452300 0 0 0 3409800 3476000 0 0 0 0 7272400 8620600 6568800 0 0 0 5406 1624 5266 100758;100759;100760;100761;100762;100763;100764;100765;100766;100767;100768 61647;61648;61649;61650;61651 61649 5 EREMFGAEEDPFSVLTER Unmodified 2140.9735 0.97353384 1380 P31802 narP Nitrate/nitrite response regulator protein NarP yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.988 46.565 3 0.00013406 18552 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 67.928 66.419 97525000 9910400 7218400 7648900 0 0 0 7990600 5988200 6724700 3641600 2002100 2411000 7889900 8104700 6736000 0 2345100 0 7407200 3970100 7536200 0 0 0 5407 1380 5267 100769;100770;100771;100772;100773;100774;100775;100776;100777;100778;100779;100780;100781;100782;100783;100784 61652;61653 61653 0 ERESAEPEELVEPFLTR Unmodified 2029.9956 0.99564949 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.036 41.521 3 2.6949E-10 19504 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 103.04 98.515 104310000 9747800 11286000 10173000 0 0 0 7841100 7203100 5763700 0 0 0 6260700 8437800 5463000 0 0 0 9789000 11743000 10604000 0 0 0 5408 1348 5268 100785;100786;100787;100788;100789;100790;100791;100792;100793;100794;100795;100796 61654 61654 1 ERFDSLGNK Unmodified 1064.5251 0.52507234 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 13.422 13.759 2;3 0.007224 3372 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 91.069 71.591 26289000 0 0 2661400 0 0 0 0 0 0 0 0 0 6165200 0 0 5323600 5634500 5910000 0 0 0 593980 0 0 5409 395 5269 100797;100798;100799;100800;100801;100802 61655;61656;61657 61655 3 ERFTVLISPHVNK Unmodified 1538.8569 0.85691158 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 2 2 2 24.257 23.178 3;4 0.0057711 8397 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 58.487 57.855 98636000 0 0 0 3626800 3515800 3337300 0 0 0 15592000 16381000 15433000 0 0 0 4029200 2014900 0 0 0 0 11874000 12652000 10180000 5410 365 5270 100803;100804;100805;100806;100807;100808;100809;100810;100811;100812;100813;100814;100815;100816;100817;100818;100819 61658;61659;61660;61661;61662;61663;61664;61665;61666;61667;61668;61669;61670;61671;61672 61663 15 ERGEGFQQAVAAHK Unmodified 1526.759 0.75898845 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 1 1 3 3 3 1 3 3 3 12.133 12.917 2;3;4 3.1605E-26 3621 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 234.63 223.41 5796600000 542540000 460320000 475520000 0 0 0 506680000 492740000 511700000 0 615320 641520 481160000 479600000 510030000 0 0 600150 395140000 457310000 482020000 0 0 0 5411 72 5271 100820;100821;100822;100823;100824;100825;100826;100827;100828;100829;100830;100831;100832;100833;100834;100835;100836;100837;100838;100839;100840;100841;100842;100843;100844;100845;100846;100847;100848;100849;100850;100851;100852;100853;100854;100855;100856;100857;100858 61673;61674;61675;61676;61677;61678;61679;61680;61681;61682;61683;61684;61685;61686;61687;61688;61689;61690;61691;61692;61693;61694;61695;61696;61697;61698;61699;61700;61701;61702;61703;61704;61705;61706;61707;61708 61675 36 ERGPVAI Unmodified 740.41809 0.41808807 1686 P64559 cptB Antitoxin CptB yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.44 18.122 2 0.032034 6658 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 78.616 69.932 204670000 11276000 14940000 11625000 0 0 0 21203000 19177000 16956000 0 0 0 12758000 14226000 13142000 0 0 0 22271000 24796000 22301000 0 0 0 5412 1686 5272 100859;100860;100861;100862;100863;100864;100865;100866;100867;100868;100869;100870 61709;61710;61711;61712;61713;61714;61715;61716 61710 8 ERIEGVEFFAVNTDAQALR Unmodified 2164.0913 0.091281208 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 43.601 42.098 3 5.2961E-07 16874 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 102.47 93.302 129580000 0 0 0 0 0 0 0 0 0 10942000 10553000 10797000 8700300 8879900 9277400 2547700 0 1443600 22376000 16944000 17065000 0 3870900 6184800 5413 502 5273 100871;100872;100873;100874;100875;100876;100877;100878;100879;100880;100881;100882;100883 61717 61717 1 ERIEGVEFFAVNTDAQALRK Unmodified 2292.1862 0.18624423 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 1 1 2 2 2 36.971 35.261 3;4 1.5973E-14 14263 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 143.15 142.79 236610000 0 0 0 4476500 6258700 5843800 0 0 0 59385000 49487000 47963000 0 0 0 10946000 5441100 6780500 0 0 0 16185000 13474000 10366000 5414 502 5274 100884;100885;100886;100887;100888;100889;100890;100891;100892;100893;100894;100895;100896;100897;100898;100899;100900;100901;100902;100903 61718;61719;61720;61721;61722;61723;61724;61725;61726;61727 61718 10 ERLDEAQEAAR Unmodified 1286.6215 0.62149192 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.646 12.491 2 0.0018042 3333 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 83.045 55.617 71165000 4968600 4153000 4317900 0 0 0 0 10323000 11040000 0 0 0 5983900 6157900 5891900 0 0 0 7097100 5849100 5382900 0 0 0 5415 1197 5275 100904;100905;100906;100907;100908;100909;100910;100911;100912;100913;100914 61728 61728 1 ERLDPSEYANVK Unmodified 1419.6994 0.69940789 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 1 1 2 2 2 21.056 21.463 2;3 7.0536E-08 8420 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 158.94 138.64 648910000 215610000 217590000 169480000 1812300 1270600 1663200 0 0 0 0 0 0 0 2311700 2040400 0 0 0 11421000 13614000 12088000 0 0 0 5416 318 5276 100915;100916;100917;100918;100919;100920;100921;100922;100923;100924;100925;100926;100927;100928;100929;100930;100931;100932 61729;61730;61731;61732;61733;61734 61733 6 ERLEALREEQMAK Unmodified 1601.8195 0.8195398 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 2 1 2 2 2 2 2 1 14.99 15.814 2;3 6.1468E-07 5059 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 121.45 91.512 338950000 17679000 16792000 24044000 505060 437200 552520 25953000 32301000 21833000 0 0 0 35050000 32172000 34229000 0 0 0 38984000 29736000 28679000 0 0 0 5417 92 5277 100933;100934;100935;100936;100937;100938;100939;100940;100941;100942;100943;100944;100945;100946;100947;100948;100949;100950;100951;100952;100953;100954;100955;100956 61735;61736;61737;61738;61739;61740;61741;61742;61743 61741 9 ERLEEVNAELEQPDVWNEPER Unmodified 2580.2092 0.20922409 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.489 35.815 3 9.2944E-28 17707 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.54 178.74 345410000 30629000 31895000 32210000 0 0 0 30350000 34412000 27660000 0 0 0 23556000 27961000 28943000 0 0 0 23373000 30352000 24067000 0 0 0 5418 149 5278 100957;100958;100959;100960;100961;100962;100963;100964;100965;100966;100967;100968 61744;61745;61746;61747;61748;61749;61750;61751;61752;61753;61754 61744 9 ERLSLGDLDTLMPQDMINAK Unmodified 2259.1239 0.12390324 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1 1 50.414 49.863 2;3 1.0082E-22 19263 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 220.72 213.99 319340000 0 0 0 0 0 0 0 0 0 18809000 0 0 0 0 0 81473000 80236000 94445000 0 0 0 14589000 14564000 15223000 5419 463 5279 100969;100970;100971;100972;100973;100974;100975;100976;100977;100978;100979 61755;61756;61757;61758;61759;61760;61761;61762 61756 8 ERLSLGDLDTLMPQDMINAKPISAAVK Oxidation (M) 2941.5253 0.52527862 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 4 4 4 1 2 1 45.68 45.098 4 1.07E-07 16898 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 104.96 101.76 261670000 0 0 0 0 0 0 0 0 0 5153100 0 6725100 0 0 0 65389000 76992000 93094000 0 0 0 3003300 5119000 6197100 5420 463 5280 100980;100981;100982;100983;100984;100985;100986;100987;100988;100989;100990;100991;100992;100993;100994;100995;100996;100997;100998 61763;61764;61765;61766;61767;61768;61769;61770;61771;61772;61773 61765 260;261 11 ERLSLGDLDTLMPQDMINAKPISAAVK Unmodified 2925.5304 0.530364 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 49.493 48.524 3;4 1.8588E-22 19431 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 164.28 158.5 7015600000 0 0 0 0 0 0 0 0 0 281310000 247890000 217640000 0 0 0 1333100000 1455800000 2100500000 0 0 0 468850000 477390000 433140000 5421 463 5280 100999;101000;101001;101002;101003;101004;101005;101006;101007;101008;101009;101010;101011;101012;101013;101014;101015;101016 61774;61775;61776;61777;61778;61779;61780;61781;61782;61783;61784;61785;61786;61787;61788;61789;61790;61791 61783 18 ERMGHIELASPTAHIWFLK Oxidation (M) 2251.1572 0.1571927 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 1 2 35.64 34.415 4;5 1.1361E-06 13460 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 92.679 86.708 136250000 0 0 0 0 0 0 0 0 0 14210000 0 9845800 0 0 0 24008000 17836000 18513000 0 0 0 15130000 14110000 22601000 5422 458 5281 101017;101018;101019;101020;101021;101022;101023;101024;101025;101026;101027;101028;101029 61792;61793;61794;61795;61796;61797;61798;61799;61800 61798 226 9 ERMGHIELASPTAHIWFLK Unmodified 2235.1623 0.16227808 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 36.454 36.543 4 0.00067918 12577 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 64.346 61.423 166050000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61813000 43469000 60767000 0 0 0 0 0 0 5423 458 5281 101030;101031;101032 61801 61801 1 ERNDELAK Unmodified 973.48287 0.48287317 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 7.9396 8.6722 2 0.10122 1875 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 57.96 32.021 60626000 19044000 20497000 21085000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5424 1141 5282 101033;101034;101035 61802;61803 61802 2 ERPDAVLPTMGGQTALNCALELER Unmodified 2640.3 0.29997013 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 2 1 2 1 1 1 46.939 45.58 2;3 3.6001E-71 22152 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 328.73 305.72 1835400000 402320000 379780000 358840000 2227200 0 1960400 0 0 0 0 0 0 51345000 42143000 47340000 0 0 0 178940000 171550000 173120000 8704000 8997500 8111300 5425 65 5283 101036;101037;101038;101039;101040;101041;101042;101043;101044;101045;101046;101047;101048;101049;101050;101051;101052;101053;101054 61804;61805;61806;61807;61808;61809;61810;61811;61812;61813;61814;61815;61816;61817 61814 14 ERPGVMFADMELIGIPHTIVLGDR Unmodified 2665.372 0.37201286 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 1 2 2 2 2 2 52.565 51.313 3;4 2.4144E-15 23932 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 146.76 146 5098100000 437450000 431920000 374930000 0 0 2637000 419230000 385710000 243120000 0 0 0 380420000 453690000 416270000 0 0 0 525330000 485010000 542390000 0 0 0 5426 1120 5284 101055;101056;101057;101058;101059;101060;101061;101062;101063;101064;101065;101066;101067;101068;101069;101070;101071;101072;101073;101074;101075;101076;101077 61818;61819;61820;61821;61822;61823;61824;61825;61826;61827;61828;61829;61830;61831;61832;61833;61834;61835;61836;61837;61838;61839 61838 22 ERPIGHLVDALR Unmodified 1374.7732 0.77318195 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.554 22.833 2 2.7032E-06 9838 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 147.63 139.98 128670000 16222000 18597000 17647000 0 0 0 8093600 9459700 9141700 0 0 0 7745700 6377400 7203500 0 0 0 9714600 9305800 9161800 0 0 0 5427 232 5285 101078;101079;101080;101081;101082;101083;101084;101085;101086;101087;101088;101089 61840;61841;61842;61843 61840 4 ERPTIASITFSGNK Unmodified 1519.7995 0.79945628 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.225 25.049 3 0.054911 8945 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 40.801 38.866 179270000 14851000 15857000 10585000 2646200 2329100 2455400 0 12317000 13449000 7013200 5989200 7205400 15322000 10319000 14683000 0 2558400 4017300 22323000 0 0 4471200 5159300 5714600 5428 486 5286 101090;101091;101092;101093;101094;101095;101096;101097;101098;101099;101100;101101;101102;101103;101104;101105;101106;101107;101108;101109 61844;61845 61845 0 ERQEQQEQEAAELQAVTAIAEGR Unmodified 2583.2525 0.25248589 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 2 1 2 3 3 3 2 1 2 4 4 4 2 2 3 5 4 3 42.713 41.17 2;3;4 1.0917E-102 20170 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 384.31 365.48 32802000000 242850000 239240000 206280000 13785000 0 0 17017000 12077000 149590000 1593200000 1278700000 1222600000 117860000 97200000 113620000 6823500000 7232700000 6957100000 152170000 134930000 159680000 1973800000 2059100000 2005200000 5429 384 5287 101110;101111;101112;101113;101114;101115;101116;101117;101118;101119;101120;101121;101122;101123;101124;101125;101126;101127;101128;101129;101130;101131;101132;101133;101134;101135;101136;101137;101138;101139;101140;101141;101142;101143;101144;101145;101146;101147;101148;101149;101150;101151;101152;101153;101154;101155;101156;101157;101158;101159;101160;101161;101162;101163;101164;101165;101166;101167;101168;101169;101170 61846;61847;61848;61849;61850;61851;61852;61853;61854;61855;61856;61857;61858;61859;61860;61861;61862;61863;61864;61865;61866;61867;61868;61869;61870;61871;61872;61873;61874;61875;61876;61877;61878;61879;61880;61881;61882;61883;61884;61885;61886;61887;61888;61889;61890;61891;61892;61893;61894;61895;61896;61897;61898;61899;61900;61901;61902;61903;61904;61905;61906;61907;61908;61909;61910;61911 61903 64 ERQEQQEQEAAELQAVTAIAEGRR Unmodified 2739.3536 0.35359692 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 3 3 5 4 4 4 3 3 37.158 35.777 3;4;5 4.4624E-72 13878 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 287.32 281.35 11830000000 0 0 0 7605800 5718400 1511400 0 0 0 472430000 436000000 413710000 0 0 0 2914900000 2522600000 2403500000 0 0 0 960550000 870360000 820750000 5430 384 5288 101171;101172;101173;101174;101175;101176;101177;101178;101179;101180;101181;101182;101183;101184;101185;101186;101187;101188;101189;101190;101191;101192;101193;101194;101195;101196;101197;101198;101199;101200;101201;101202;101203;101204;101205;101206;101207 61912;61913;61914;61915;61916;61917;61918;61919;61920;61921;61922;61923;61924;61925;61926;61927;61928;61929;61930;61931;61932;61933;61934;61935;61936;61937;61938;61939;61940;61941;61942;61943;61944 61935 32 ERREEEEQQQR Unmodified 1515.7026 0.70259579 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 1 1 1 3 3 3 1 1 1 1 1 1 7.84 8.2343 2;3;4 6.4598E-14 1369 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 218.11 204.52 601690000 14374000 18438000 11883000 0 0 269090 3568400 4690800 3222200 1908800 1829800 1072200 0 5433100 3794600 125340000 212200000 160140000 8472600 9214900 8210100 2787300 1901300 2945300 5431 729 5289 101208;101209;101210;101211;101212;101213;101214;101215;101216;101217;101218;101219;101220;101221;101222;101223;101224;101225;101226;101227;101228;101229;101230;101231;101232;101233;101234;101235;101236 61945;61946;61947;61948;61949;61950;61951;61952;61953;61954;61955;61956;61957;61958;61959;61960;61961;61962 61960 18 ERTELPIGAYQVSGEYAMIK Unmodified 2254.1304 0.13036883 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.997 39.332 3 5.9528E-07 19065 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.488 93.039 275780000 25049000 22400000 20844000 0 0 0 23476000 24994000 24445000 0 0 0 22164000 18276000 18728000 0 0 0 23860000 26520000 25021000 0 0 0 5432 715 5290 101237;101238;101239;101240;101241;101242;101243;101244;101245;101246;101247;101248 61963;61964;61965;61966;61967;61968;61969 61963 7 ERVHSAATIAGIAFANAFLGVCHSMAHK Unmodified 2965.4803 0.48033453 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 44.047 41.982 4;5 4.7965E-08 16764 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 107.75 101.52 448140000 0 0 0 35142000 42695000 52750000 0 0 0 70256000 39905000 44013000 0 0 0 0 0 0 0 0 0 53169000 56096000 54118000 5433 548 5291 101249;101250;101251;101252;101253;101254;101255;101256;101257;101258;101259;101260;101261;101262;101263;101264;101265 61970;61971;61972;61973;61974;61975;61976;61977;61978;61979;61980;61981;61982;61983;61984 61972 15 ESADYFR Unmodified 886.3821 0.38209649 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 17.916 18.417 2 0.0026472 6464 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 111.28 102.04 263130000 2236200 0 0 0 0 552640 47402000 48935000 50011000 0 0 0 0 0 28777000 0 0 0 28596000 27832000 27659000 516280 612030 0 5434 801 5292 101266;101267;101268;101269;101270;101271;101272;101273;101274;101275;101276 61985;61986;61987 61987 2 ESAEPEELVEPFLTR Unmodified 1744.8519 0.85194536 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.25 48.844 2;3 4.0151E-20 24075 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 210.44 208.5 696630000 89579000 80947000 71158000 0 0 0 47699000 40375000 38790000 0 0 0 43441000 43880000 41969000 0 0 0 71356000 60627000 66802000 0 0 0 5435 1348 5293 101277;101278;101279;101280;101281;101282;101283;101284;101285;101286;101287;101288;101289;101290;101291;101292;101293;101294;101295;101296;101297;101298;101299;101300 61988;61989;61990;61991;61992;61993;61994;61995;61996;61997;61998;61999;62000;62001;62002;62003;62004;62005 61990 16 ESAEPVTIVSTGPQTNVALLLNSHPELHSK Unmodified 3167.6463 0.64625669 1552 P41409 rihA Pyrimidine-specific ribonucleoside hydrolase RihA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.649 42.134 4 0.15429 20625 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 17.078 14.875 124360000 9923800 10049000 9841700 0 0 0 10755000 11585000 11502000 0 0 0 6642300 5932300 6662300 0 0 0 14982000 13995000 12487000 0 0 0 5436 1552 5294 101301;101302;101303;101304;101305;101306;101307;101308;101309;101310;101311;101312 62006 62006 1 ESANAIQLR Unmodified 1000.5302 0.53015772 223 P0A6A0 ubiB Probable protein kinase UbiB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 2 1 1 1 1 1 1 1 17.258 17.819 2 0.065176 5401 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 55.902 29.73 1065800000 13297000 13952000 13325000 0 0 0 0 7590600 20681000 757600000 0 153370000 11650000 13862000 10514000 0 0 0 15142000 19686000 15144000 0 0 0 5437 223 5295 101313;101314;101315;101316;101317;101318;101319;101320;101321;101322;101323;101324;101325;101326 62007;62008 62008 0 ESAPAAAAPAAQPALAAR Unmodified 1632.8584 0.85836815 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 3 2 2 2 2 2 2 2 2 3 4 3 2 2 2 23.095 22.355 2;3 1.4599E-18 9562 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.47 133.89 13270000000 1228700000 1202300000 1163800000 14821000 16869000 16528000 654070000 681100000 669100000 16361000 11737000 11774000 854090000 782210000 799260000 0 0 0 1588600000 1683600000 1703700000 64804000 51750000 54410000 5438 938 5296 101327;101328;101329;101330;101331;101332;101333;101334;101335;101336;101337;101338;101339;101340;101341;101342;101343;101344;101345;101346;101347;101348;101349;101350;101351;101352;101353;101354;101355;101356;101357;101358;101359;101360;101361;101362;101363;101364;101365;101366;101367;101368;101369;101370;101371;101372;101373;101374;101375 62009;62010;62011;62012;62013;62014;62015;62016;62017;62018;62019;62020;62021;62022;62023;62024;62025;62026;62027;62028;62029;62030;62031;62032;62033;62034;62035;62036;62037;62038;62039;62040;62041;62042;62043;62044;62045;62046;62047;62048;62049 62031 41 ESAQGAGAR Unmodified 845.39914 0.39914354 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 1 1 2 1 2 1 2 2 1 1 1 1 6.0921 6.7896 2 0.00011414 1379 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.06 118.62 748760000 63849000 69370000 65286000 0 0 948150 63228000 64250000 55866000 5171900 4898600 4254900 55611000 30153000 47922000 0 0 75382 75956000 76100000 60483000 1601300 1770400 1969800 5439 564 5297 101376;101377;101378;101379;101380;101381;101382;101383;101384;101385;101386;101387;101388;101389;101390;101391;101392;101393;101394;101395;101396;101397;101398;101399;101400;101401;101402 62050;62051;62052;62053;62054;62055;62056;62057;62058;62059;62060;62061;62062;62063;62064 62062 15 ESAVMAITANELDTAR Unmodified 1690.8196 0.81959938 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 39.7 38.168 2;3 2.7729E-10 18379 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 186.58 177.63 211250000 76218000 75556000 58576000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 901500 0 5440 71 5298 101403;101404;101405;101406;101407;101408;101409 62065;62066;62067;62068;62069 62068 5 ESAYGIGCTTWEVIWR Unmodified 1926.8934 0.89343302 1020 P0AGH8 pstC Phosphate transport system permease protein PstC yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 53.698 52.296 2 0.00019585 21057 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 93.959 88.117 29711000 0 0 0 0 0 0 4703000 0 0 0 4512200 2924300 3625600 6205800 0 0 0 0 0 0 6110000 0 0 1630000 5441 1020 5299 101410;101411;101412;101413;101414;101415;101416 62070 62070 1 ESCGWCTPCR Unmodified 1311.4795 0.47946083 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.247 18.634 2 3.7221E-07 7197 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.44 176.44 443830000 22198000 21020000 18140000 4734400 4573700 5939800 32834000 30386000 32492000 17272000 8299600 7112700 27288000 22711000 27160000 0 1771100 2157800 45416000 46504000 48521000 5631700 5069300 6593000 5442 1383 5300 101417;101418;101419;101420;101421;101422;101423;101424;101425;101426;101427;101428;101429;101430;101431;101432;101433;101434;101435;101436;101437;101438;101439 62071;62072;62073;62074;62075;62076;62077;62078;62079;62080;62081;62082;62083;62084;62085;62086;62087;62088;62089 62074 19 ESDEASKK Unmodified 892.41379 0.41379055 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 3.3632 4.1758 2 0.081168 564 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 56.659 51.121 12620000 4198100 3566500 3789200 0 0 0 0 0 0 0 0 0 0 1066600 0 0 0 0 0 0 0 0 0 0 5443 1662 5301 101440;101441;101442;101443 62090 62090 1 ESDELIAK Unmodified 903.45493 0.45492709 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 1 1 1 14.947 15.792 2 0.00067698 5389 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.84 103.87 8402200000 572520000 561710000 516760000 0 0 405960 1066000000 1043300000 1013500000 0 0 0 568530000 497110000 598250000 0 0 0 709250000 615880000 639000000 0 0 0 5444 399 5302 101444;101445;101446;101447;101448;101449;101450;101451;101452;101453;101454;101455;101456;101457;101458;101459 62091;62092;62093;62094;62095;62096;62097;62098;62099;62100;62101 62096 11 ESDENDAQIAER Unmodified 1375.5852 0.58516599 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.765 13.606 2 3.0678E-23 4009 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 232.88 213.1 337530000 58645000 56570000 55017000 0 0 0 27561000 34049000 26964000 0 0 0 12521000 9906500 12854000 0 0 0 13924000 15362000 14152000 0 0 0 5445 1934 5303 101460;101461;101462;101463;101464;101465;101466;101467;101468;101469;101470;101471 62102;62103;62104;62105;62106;62107;62108;62109;62110;62111 62104 10 ESDIEPLIVVK Unmodified 1240.6915 0.69146896 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.345 37.671 2 0.00030468 18636 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 91.087 82.624 559550000 55261000 54549000 48012000 0 0 0 49352000 50842000 49901000 0 0 0 41988000 39763000 37416000 0 0 0 45357000 42889000 44219000 0 0 0 5446 880 5304 101472;101473;101474;101475;101476;101477;101478;101479;101480;101481;101482;101483 62112;62113;62114;62115;62116;62117;62118;62119;62120 62113 9 ESDKWGAASSEDLLAVIGR Unmodified 2002.996 0.99598384 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.173 46.833 3 5.8517E-14 22820 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 136.66 127.95 95293000 5501100 7522100 8562100 0 0 0 8690700 8543800 8091800 0 0 0 8066000 4766700 5618800 0 0 0 8232900 12644000 9053500 0 0 0 5447 1685 5305 101484;101485;101486;101487;101488;101489;101490;101491;101492;101493;101494;101495 62121;62122;62123 62122 3 ESDLALMTNAGTEIGVASTK Unmodified 2006.983 0.98303589 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 2 2 43.434 41.889 2;3 8.3911E-38 19623 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 303.02 262.64 447680000 39395000 36914000 34015000 0 384070 0 44195000 44356000 41383000 0 0 0 36264000 32145000 0 0 0 0 52067000 48065000 38494000 0 0 0 5448 1137 5306 101496;101497;101498;101499;101500;101501;101502;101503;101504;101505;101506;101507;101508;101509;101510 62124;62125;62126;62127;62128;62129;62130;62131;62132;62133;62134;62135;62136;62137;62138 62138 15 ESDNDRR Unmodified 890.38422 0.38422176 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 3.1194 3.9972 2 0.007184 485 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 98.418 75.375 68283000 9188000 7504600 9184700 0 0 0 0 0 0 0 0 0 2523000 3206300 2091400 0 0 0 11799000 10585000 12200000 0 0 0 5449 744 5307 101511;101512;101513;101514;101515;101516;101517;101518;101519;101520 62139;62140;62141;62142;62143 62139 5 ESEVIDWQDHILNKPDWAQ Unmodified 2322.0917 0.091675139 442 P0A8L5 ycgN UPF0260 protein YcgN yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 46.625 45.21 3 6.1228E-05 22079 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.505 73.751 114300000 12311000 12887000 12963000 0 0 0 9449900 10632000 8900000 0 0 0 7367300 0 5700200 0 0 0 12792000 8954900 12346000 0 0 0 5450 442 5308 101521;101522;101523;101524;101525;101526;101527;101528;101529;101530;101531 62144 62144 1 ESEVLTNLEILER Unmodified 1543.8094 0.80935227 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.263 45.873 2 6.0896E-06 22629 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.97 137.76 534280000 35223000 36155000 28171000 0 0 0 69050000 64489000 66562000 0 0 0 36078000 36898000 45875000 0 0 0 37062000 40954000 37767000 0 0 0 5451 1588 5309 101532;101533;101534;101535;101536;101537;101538;101539;101540;101541;101542;101543 62145;62146;62147;62148;62149;62150;62151;62152;62153;62154;62155;62156 62147 12 ESFHLMVLDLMLPGEDGLSICR Unmodified 2531.2222 0.22223708 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 55.138 53.85 2;3 1.5935E-23 26656 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.05 173.28 929240000 98835000 98506000 93311000 14700000 16179000 16219000 39982000 36348000 0 17381000 33369000 19790000 42582000 34848000 40042000 15932000 34576000 36844000 52724000 54697000 43697000 30636000 34247000 23796000 5452 570 5310 101544;101545;101546;101547;101548;101549;101550;101551;101552;101553;101554;101555;101556;101557;101558;101559;101560;101561;101562;101563;101564;101565;101566;101567;101568;101569;101570;101571;101572;101573 62157;62158;62159;62160;62161;62162;62163;62164;62165;62166;62167 62165 10 ESFLNPGFR Unmodified 1065.5243 0.52434406 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.523 32.924 2 0.00077202 15120 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.64 94.45 709020000 117120000 105620000 95175000 1678300 0 1410600 62722000 65349000 62297000 1018500 0 1260100 31589000 27830000 23368000 0 0 0 37551000 38885000 36140000 0 0 0 5453 1193 5311 101574;101575;101576;101577;101578;101579;101580;101581;101582;101583;101584;101585;101586;101587;101588;101589 62168;62169;62170;62171;62172;62173 62172 3 ESFSMFAAMLESLK Unmodified 1589.747 0.74695171 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 55.578 54.322 2;3 9.7563E-11 22079 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 159.94 157.24 1209100000 31504000 37808000 31206000 7953000 7819700 7554800 40306000 34467000 40800000 109590000 89032000 99162000 32638000 4211200 6462900 98462000 118690000 141880000 51645000 7431200 45793000 54842000 62291000 47507000 5454 1057 5312 101590;101591;101592;101593;101594;101595;101596;101597;101598;101599;101600;101601;101602;101603;101604;101605;101606;101607;101608;101609;101610;101611;101612;101613;101614;101615;101616;101617;101618;101619;101620;101621;101622;101623;101624;101625;101626;101627;101628;101629;101630;101631;101632;101633;101634;101635;101636;101637 62174;62175;62176;62177;62178;62179;62180;62181;62182;62183;62184;62185;62186;62187;62188;62189;62190 62180 17 ESGALFVDR Unmodified 992.49271 0.49270958 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.623 23.626 2 0.00027359 10734 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 120.15 86.358 1461100000 97551000 92403000 84462000 0 0 0 123580000 122900000 125130000 0 0 0 148520000 123680000 115420000 0 0 0 148620000 136470000 142360000 0 0 0 5455 325 5313 101638;101639;101640;101641;101642;101643;101644;101645;101646;101647;101648;101649 62191;62192;62193;62194;62195;62196;62197;62198;62199;62200;62201;62202 62192 12 ESGATVFAYHVNDPER Unmodified 1790.8224 0.82237657 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 26.659 25.521 2;3 3.532E-50 11884 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 291.5 277.34 1549100000 87846000 85472000 75866000 0 0 0 128030000 144990000 134100000 1874800 0 864100 119680000 108290000 115220000 0 0 0 184240000 170340000 192260000 0 0 0 5456 1489 5314 101650;101651;101652;101653;101654;101655;101656;101657;101658;101659;101660;101661;101662;101663;101664;101665;101666;101667;101668;101669;101670;101671;101672;101673;101674;101675 62203;62204;62205;62206;62207;62208;62209;62210;62211;62212;62213;62214;62215;62216;62217;62218;62219;62220;62221;62222;62223;62224;62225;62226 62204 24 ESGFDGELADLTDDILIYHLK Unmodified 2363.1533 0.15327234 798 P0ADP9 yihD Protein YihD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 55.036 53.566 2;3 5.7261E-11 26489 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.31 130.37 2149900000 399210000 307890000 306250000 14673000 0 0 166640000 133820000 136710000 0 4409700 6147200 104460000 112370000 102900000 0 0 0 133960000 113170000 107260000 0 0 0 5457 798 5315 101676;101677;101678;101679;101680;101681;101682;101683;101684;101685;101686;101687;101688;101689;101690;101691;101692 62227;62228;62229;62230;62231;62232;62233;62234;62235;62236;62237;62238;62239;62240 62236 14 ESGGDFASVTGGTR Unmodified 1339.6004 0.60042213 84 P03960 kdpB Potassium-transporting ATPase B chain yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 20.599 21.098 2 0.014441 8273 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 54.7 52.642 15564000 5757700 5380800 4425300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5458 84 5316 101693;101694;101695 62241 62241 1 ESGIIQGDLIAK Unmodified 1242.682 0.68196691 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 33.122 31.878 2 9.6414E-05 14529 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.496 83.53 1412500000 762300000 649530000 0 722520 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5459 852 5317 101696;101697;101698;101699;101700;101701;101702 62242;62243;62244;62245;62246 62245 3 ESGLFDMR Unmodified 953.42767 0.42766648 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.891 30.551 2 0.00090825 14580 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 118.05 107.64 459600000 38943000 37178000 40670000 0 0 0 39384000 38878000 43708000 0 0 0 34665000 27720000 29959000 0 0 0 40309000 44885000 43305000 0 0 0 5460 85 5318 101703;101704;101705;101706;101707;101708;101709;101710;101711;101712;101713;101714 62247;62248;62249;62250;62251;62252;62253;62254;62255;62256;62257;62258 62249 12 ESGLLGLTEVTSDCR Unmodified 1635.7774 0.77740021 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.989 40.165 2 1.2298E-27 19454 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 245.13 242.61 7093300000 321190000 325620000 330030000 1657500 1901800 1951700 660670000 634770000 599550000 2085300 0 2883800 832020000 726850000 699140000 0 0 0 644910000 656040000 650290000 0 1728700 0 5461 224 5319 101715;101716;101717;101718;101719;101720;101721;101722;101723;101724;101725;101726;101727;101728;101729;101730;101731;101732 62259;62260;62261;62262;62263;62264;62265;62266;62267;62268;62269;62270 62267 12 ESGLMNAVTPQR Unmodified 1301.6398 0.63978452 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.313 24.17 2 3.1831E-08 10266 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 163.66 125.37 782320000 125390000 109490000 102520000 5292100 5704800 5541700 93979000 89815000 90738000 0 0 2338800 0 71441000 71575000 0 0 0 0 0 0 0 3736300 4761400 5462 1143 5320 101733;101734;101735;101736;101737;101738;101739;101740;101741;101742;101743;101744;101745;101746 62271;62272;62273;62274;62275;62276;62277;62278;62279;62280;62281 62281 11 ESGLVLR Unmodified 772.4443 0.44430282 1844 P76256 tsaB tRNA threonylcarbamoyladenosine biosynthesis protein TsaB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 18.959 19.557 2 0.0061523 7440 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 96.666 60.079 375800000 25972000 22604000 19646000 0 0 0 0 28552000 33116000 0 0 0 38257000 28883000 27578000 0 0 0 52261000 51966000 46964000 0 0 0 5463 1844 5321 101747;101748;101749;101750;101751;101752;101753;101754;101755;101756;101757 62282;62283;62284;62285;62286;62287;62288;62289 62284 8 ESGVEAIPR Unmodified 956.49271 0.49270958 1460 P37182 hybD Hydrogenase 2 maturation protease yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.44 17.858 2 0.0025489 6117 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 84.743 52.601 428110000 5866300 4723800 4519300 0 0 616900 47273000 45101000 47694000 2881500 2309000 2094800 38737000 37877000 37622000 1431100 777210 828030 47543000 50508000 47834000 1006400 0 867730 5464 1460 5322 101758;101759;101760;101761;101762;101763;101764;101765;101766;101767;101768;101769;101770;101771;101772;101773;101774;101775;101776;101777;101778 62290;62291;62292;62293;62294;62295;62296;62297;62298;62299;62300;62301 62301 10 ESGWQGYWIDAASSLR Unmodified 1824.8431 0.84311201 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 1 2 2 2 2 52.808 51.456 2;3 1.1607E-30 25221 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 233.46 229.93 1863000000 290280000 298740000 252950000 1384200 0 0 154250000 154630000 164070000 0 2169600 1596100 17150000 14298000 85351000 0 0 0 140850000 142730000 142510000 0 0 0 5465 549 5323 101779;101780;101781;101782;101783;101784;101785;101786;101787;101788;101789;101790;101791;101792;101793;101794;101795;101796;101797;101798;101799;101800;101801;101802;101803 62302;62303;62304;62305;62306;62307;62308;62309;62310;62311;62312;62313;62314;62315;62316;62317;62318;62319 62315 14 ESHTIDVLMGR Unmodified 1256.6183 0.6183208 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 1 1 2 2 2 1 1 1 27.247 26.026 2;3 7.5025E-06 12031 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 140.16 134.85 990200000 103740000 110830000 89718000 3482300 3755900 4041200 82480000 25516000 92053000 4963800 4593400 3575800 63750000 49716000 53970000 14915000 10824000 11214000 84187000 93160000 74279000 2031300 2287700 1107100 5466 1214 5324 101804;101805;101806;101807;101808;101809;101810;101811;101812;101813;101814;101815;101816;101817;101818;101819;101820;101821;101822;101823;101824;101825;101826;101827;101828;101829;101830;101831;101832;101833;101834;101835;101836;101837;101838;101839;101840;101841;101842 62320;62321;62322;62323;62324;62325 62323 6 ESIAALCR Unmodified 918.4593 0.45930096 1129 P16689 phnM Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 19.571 20.092 2 0.15671 7805 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 47.916 41.685 48707000 0 0 0 0 0 0 0 3874100 0 0 0 0 5094600 0 4229000 0 0 0 13095000 11413000 11002000 0 0 0 5467 1129 5325 101843;101844;101845;101846;101847;101848 62326 62326 0 ESIDPIEAVR Unmodified 1127.5823 0.58225287 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 30.54 29.154 2 0.059815 13112 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 46.462 38.237 38835000 0 4078100 0 0 0 0 12405000 0 5930800 0 0 0 4982900 4849000 0 0 0 0 0 6588700 0 0 0 0 5468 324 5326 101849;101850;101851;101852;101853;101854 62327 62327 1 ESIEEAVSEVVNALK Unmodified 1615.8305 0.83048164 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 2 2 2 2 2 2 1 1 2 2 1 1 1 2 55.813 54.397 2;3 2.397E-38 25869 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 252.14 226.02 524360000 17596000 47696000 27223000 6371400 5633500 2821900 2952400 142100 0 0 0 0 90432000 131120000 129840000 0 0 0 18247000 25189000 14515000 0 4572900 0 5469 561 5327 101855;101856;101857;101858;101859;101860;101861;101862;101863;101864;101865;101866;101867;101868;101869;101870;101871;101872;101873;101874;101875;101876;101877;101878 62328;62329;62330;62331;62332;62333 62333 4 ESIEHVLCNECPTCHGR Unmodified 2096.8826 0.88262712 526 P0A9J0 rng Ribonuclease G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 19.419 19.951 3;4 0.0060899 7669 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 47.478 47.283 94690000 25418000 27186000 22585000 0 0 0 0 0 0 0 0 0 0 4013300 0 1003800 0 0 4737700 5842000 3903600 0 0 0 5470 526 5328 101879;101880;101881;101882;101883;101884;101885;101886;101887;101888;101889 62334;62335;62336;62337 62337 4 ESIIADNNIQTLR Unmodified 1485.7787 0.77872084 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 32.181 30.974 2 0.0012012 14640 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.346 62.686 52860000 8341900 10027000 0 0 0 0 0 0 0 0 0 0 5389100 4608300 4633600 0 0 0 5761000 6433500 7665600 0 0 0 5471 127 5329 101890;101891;101892;101893;101894;101895;101896;101897 62338 62338 0 ESILLTIPPGSQAGQR Unmodified 1665.905 0.90498399 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 39.375 37.554 2 3.983E-10 18535 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 145.55 140.48 60821000 6876200 8178500 6587000 0 0 0 12037000 11609000 12148000 0 0 1025400 0 0 2359000 0 0 0 0 0 0 0 0 0 5472 1440 5330 101898;101899;101900;101901;101902;101903;101904;101905 62339;62340;62341;62342;62343;62344;62345;62346 62339 8 ESLADVSDSER Unmodified 1206.5364 0.53642488 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.476 19.086 2 4.8604E-11 7367 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 200.56 195.2 1838900000 66300000 63834000 64080000 462180 531480 0 106550000 105390000 136990000 0 0 0 198030000 178560000 155940000 0 0 0 251340000 256700000 254170000 0 0 0 5473 1496 5331 101906;101907;101908;101909;101910;101911;101912;101913;101914;101915;101916;101917;101918;101919 62347;62348;62349;62350;62351;62352;62353 62347 7 ESLEEQTMNMAK Unmodified 1409.6167 0.61666582 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 27.624 26.459 2 0.00026285 12148 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.75 118.55 97502000 16169000 13933000 16831000 0 0 0 7210200 8535500 6445100 0 0 0 0 4734900 4726300 0 0 0 4491100 7736600 6688700 0 0 0 5474 1758 5332 101920;101921;101922;101923;101924;101925;101926;101927;101928;101929;101930 62354;62355;62356;62357;62358 62357 0 ESLEQRPDVEQADVSITEAHVTGTASAEQLIETIK Unmodified 3793.8858 0.88577127 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.083 44.441 4 7.6879E-70 21566 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 267.05 265.61 1174100000 127080000 114680000 119870000 0 0 0 184320000 141910000 136870000 4064900 3465600 3015100 48644000 65934000 58837000 0 0 0 51454000 61831000 52157000 0 0 0 5475 1980 5333 101931;101932;101933;101934;101935;101936;101937;101938;101939;101940;101941;101942;101943;101944;101945 62359;62360;62361;62362;62363;62364;62365;62366;62367;62368 62366 10 ESLGLDSESIR Unmodified 1204.5935 0.59354583 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.273 26.112 2 1.305E-07 11967 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 136.57 127.7 486620000 102010000 0 85443000 0 0 0 40233000 46900000 45449000 0 0 0 35113000 28969000 26151000 0 0 0 0 37722000 38629000 0 0 0 5476 1233 5334 101946;101947;101948;101949;101950;101951;101952;101953;101954;101955;101956 62369;62370;62371;62372;62373;62374;62375;62376;62377 62372 9 ESLLDEAQGADCLMVK Unmodified 1777.8226 0.82263585 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.62 44.096 2 1.1065E-30 21887 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 234.17 218.97 153320000 0 25153000 20715000 0 0 0 20640000 22130000 16968000 0 0 0 22388000 0 25328000 0 0 0 0 0 0 0 0 0 5477 715 5335 101957;101958;101959;101960;101961;101962;101963 62378;62379;62380;62381;62382;62383;62384 62378 3 ESLLDEAQGADCLMVKPAGAYLDIVR Unmodified 2833.399 0.39901547 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 2 1 53.015 51.708 3 3.953E-22 25503 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.53 152.07 1534700000 0 0 0 0 1359200 0 162250000 153610000 133700000 3256000 0 3600400 180760000 171590000 156460000 0 0 1292100 190700000 180260000 195840000 0 0 0 5478 715 5336 101964;101965;101966;101967;101968;101969;101970;101971;101972;101973;101974;101975;101976;101977 62385;62386;62387;62388;62389;62390;62391 62387 7 ESLNAELEK Unmodified 1031.5135 0.5135046 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.253 18.878 2 0.00017574 6899 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.69 119.1 1306000000 128000000 156320000 123750000 0 619900 0 140030000 165480000 169890000 0 0 0 64332000 62121000 60551000 0 0 0 90430000 71208000 73274000 0 0 0 5479 757 5337 101978;101979;101980;101981;101982;101983;101984;101985;101986;101987;101988;101989;101990 62392;62393;62394;62395 62394 4 ESLSASEVAQAIEK Unmodified 1460.7359 0.73585297 1209 P23524 garK Glycerate 2-kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.276 33.803 2 0.00016019 15479 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 106.67 95.516 126520000 6925200 8208100 5213600 0 0 0 13924000 15057000 10026000 0 0 0 10483000 9587200 11045000 0 0 0 11419000 13138000 11495000 0 0 0 5480 1209 5338 101991;101992;101993;101994;101995;101996;101997;101998;101999;102000;102001;102002 62396;62397;62398 62398 2 ESLVLLK Unmodified 800.50076 0.50075507 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 2 2 2 1 2 1 2 29.746 28.402 1;2 0.058276 13495 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 89.427 42.506 396570000 20924000 20260000 14720000 0 0 0 39484000 42040000 40563000 0 0 0 31551000 31888000 27341000 0 0 0 44704000 41974000 41118000 0 0 0 5481 1421 5339 102003;102004;102005;102006;102007;102008;102009;102010;102011;102012;102013;102014;102015;102016;102017;102018;102019;102020 62399;62400;62401;62402;62403;62404;62405;62406;62407;62408;62409 62402 10 ESLWQELADITDK Unmodified 1546.7515 0.75150304 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 55.013 53.561 2 7.4992E-09 26539 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 202.31 200.15 900650000 165460000 163600000 171060000 3443000 5306600 4363300 75463000 66312000 75832000 0 1954400 3699500 30442000 28878000 27417000 0 0 0 30921000 26069000 20432000 0 0 0 5482 613 5340 102021;102022;102023;102024;102025;102026;102027;102028;102029;102030;102031;102032;102033;102034;102035;102036;102037;102038 62410;62411;62412;62413;62414;62415;62416;62417;62418;62419;62420 62418 8 ESLWQELADITDKTQLEWR Unmodified 2360.1648 0.16484008 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 55.168 53.747 3 8.1173E-07 19717 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 97.32 93.368 49186000 0 0 0 18705000 15115000 7500100 0 0 0 3957700 3908500 0 0 0 0 0 0 0 0 0 0 0 0 0 5483 613 5341 102039;102040;102041;102042;102043 62421;62422;62423 62423 3 ESNTLASK Unmodified 848.42396 0.42396131 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 9.6673 10.525 2 0.0026738 2314 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 98.523 90.852 446250000 0 24234000 37893000 0 0 0 23347000 20729000 23149000 0 0 0 43809000 38293000 19859000 0 0 0 74284000 70140000 70510000 0 0 0 5484 1215 5342 102044;102045;102046;102047;102048;102049;102050;102051;102052;102053;102054 62424;62425;62426;62427;62428;62429;62430;62431;62432;62433 62431 9 ESPAMEIAELIAQWHSGETLVVEPNIHQLPK Unmodified 3465.7602 0.76024059 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.902 53.431 4 0.00057642 26283 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 59.971 55.016 372800000 22806000 17599000 14871000 0 0 0 32588000 31276000 20460000 0 0 0 34857000 26345000 28609000 0 0 0 52216000 48332000 42845000 0 0 0 5485 1307 5343 102055;102056;102057;102058;102059;102060;102061;102062;102063;102064;102065;102066 62434 62434 1 ESPLHIHLGQVMSR Unmodified 1602.83 0.83004491 1029 P0AGL7 rsmE Ribosomal RNA small subunit methyltransferase E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 27.413 26.193 4 0.15668 11927 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 9.5697 5.4978 66295000 0 7421200 5928400 0 0 0 7842000 7984900 8552200 0 0 0 7132800 0 0 0 0 0 6392400 5541000 9500500 0 0 0 5486 1029 5344 102067;102068;102069;102070;102071;102072;102073;102074;102075 62435 62435 1 ESPYVNLIVTR Unmodified 1289.698 0.69795133 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.42 36.503 2 0.0002415 17725 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.445 69.732 133980000 0 23545000 0 0 0 0 16864000 3864800 3104200 4176600 4034200 3817700 10327000 7967100 8323600 0 0 0 14180000 15989000 17788000 0 0 0 5487 1321 5345 102076;102077;102078;102079;102080;102081;102082;102083;102084;102085;102086;102087;102088;102089;102090 62436;62437;62438;62439;62440;62441;62442;62443;62444 62439 9 ESSEHTLR Unmodified 957.45157 0.45157304 892 P0AEW9 fruK 1-phosphofructokinase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 5.5003 6.394 2 0.0010424 1229 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 112.37 102.62 169930000 11321000 10149000 10845000 0 0 0 13594000 16706000 13972000 0 0 0 21811000 16831000 19678000 0 0 0 13116000 11147000 10764000 0 0 0 5488 892 5346 102091;102092;102093;102094;102095;102096;102097;102098;102099;102100;102101;102102;102103;102104;102105 62445;62446;62447;62448;62449;62450 62449 6 ESSVPFSYYDNQQK Unmodified 1690.7475 0.74748029 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.564 29.207 2 8.1058E-08 13722 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.87 126.92 477690000 136290000 117680000 103980000 0 0 0 17828000 15060000 14766000 0 0 0 10644000 8748500 9734700 0 0 0 14665000 13130000 15152000 0 0 0 5489 1501 5347 102106;102107;102108;102109;102110;102111;102112;102113;102114;102115;102116;102117 62451;62452;62453;62454;62455;62456;62457;62458;62459 62452 9 ESTAYHEAGHAIIGR Unmodified 1610.7801 0.78011783 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 3 3 3 3 3 3 13.981 14.596 2;3;4 4.556E-46 4523 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 327.29 313.06 1902100000 41937000 42679000 38288000 36456000 26450000 29149000 160500000 180890000 156050000 67246000 56308000 60537000 114370000 88107000 93458000 15793000 15853000 13647000 133640000 262770000 140880000 41130000 41966000 43955000 5490 595 5348 102118;102119;102120;102121;102122;102123;102124;102125;102126;102127;102128;102129;102130;102131;102132;102133;102134;102135;102136;102137;102138;102139;102140;102141;102142;102143;102144;102145;102146;102147;102148;102149;102150;102151;102152;102153;102154;102155;102156;102157;102158;102159;102160;102161;102162;102163;102164;102165;102166;102167;102168;102169;102170;102171;102172;102173;102174;102175;102176;102177;102178;102179;102180;102181;102182;102183;102184;102185;102186;102187 62460;62461;62462;62463;62464;62465;62466;62467;62468;62469;62470;62471;62472;62473;62474;62475;62476;62477;62478;62479;62480;62481;62482;62483;62484;62485;62486;62487;62488;62489;62490;62491;62492;62493;62494;62495;62496;62497;62498;62499;62500;62501;62502;62503;62504;62505;62506 62489 46 ESTHEYLK Unmodified 1005.4767 0.47672516 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.211 12.043 2 0.00048891 3077 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 136.16 104.22 790810000 80216000 61433000 64679000 0 0 0 102380000 82465000 96878000 0 0 0 58113000 45034000 59451000 0 0 0 44260000 44520000 51378000 0 0 0 5491 1284 5349 102188;102189;102190;102191;102192;102193;102194;102195;102196;102197;102198;102199 62507;62508;62509;62510;62511;62512;62513;62514;62515 62507 9 ESVAELAYYR Unmodified 1199.5823 0.58225287 317 P0A784 orn Oligoribonuclease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.672 30.316 2 8.4327E-10 14541 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 201.39 183.35 838120000 81722000 71408000 66872000 0 0 0 83666000 77304000 77199000 0 0 0 51416000 52876000 53944000 0 0 0 72737000 76349000 72622000 0 0 0 5492 317 5350 102200;102201;102202;102203;102204;102205;102206;102207;102208;102209;102210;102211 62516;62517;62518;62519;62520;62521;62522;62523;62524;62525 62516 10 ESVEAILGETLDLPK Unmodified 1612.856 0.85596811 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 54.071 52.664 2 1.2136E-08 25906 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 174.84 164.01 221370000 41125000 34321000 35834000 0 0 0 0 6803900 0 0 0 0 15941000 16604000 13668000 0 0 0 17036000 21314000 18727000 0 0 0 5493 52 5351 102212;102213;102214;102215;102216;102217;102218;102219;102220;102221 62526;62527;62528;62529;62530 62528 5 ESVEEVPLQPVNPHSANRPPVVSDAAPDFVK Unmodified 3323.6786 0.67861945 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 37.014 35.247 4 1.0214E-09 16323 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 106.81 100.1 234240000 0 0 41916000 0 0 0 0 0 0 0 3161100 0 31463000 33725000 34142000 0 0 0 42058000 45139000 0 1741200 892260 0 5494 1609 5352 102222;102223;102224;102225;102226;102227;102228;102229;102230 62531;62532;62533 62532 3 ESVGFLVTIK Unmodified 1091.6227 0.62266112 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 41.76 39.931 1;2 0.00033578 15574 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 84.213 66.827 1145700000 75729000 63519000 59619000 9046600 9977800 9467500 71828000 73821000 65177000 1404600 1452100 1061800 81277000 73509000 72126000 0 0 0 137470000 154640000 134030000 23746000 25335000 1447800 5495 938 5353 102231;102232;102233;102234;102235;102236;102237;102238;102239;102240;102241;102242;102243;102244;102245;102246;102247;102248;102249;102250;102251;102252;102253;102254;102255;102256;102257;102258;102259;102260;102261;102262;102263;102264;102265;102266;102267;102268 62534;62535;62536;62537;62538;62539;62540;62541;62542;62543;62544;62545;62546;62547;62548;62549;62550;62551;62552;62553;62554;62555;62556;62557;62558;62559;62560;62561;62562;62563;62564;62565;62566;62567;62568;62569;62570 62539 35 ESVIWVVDGGNIK Unmodified 1414.7456 0.7456298 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 1 2 1 1 1 2 2 1 1 1 1 2 2 3 2 2 2 43.021 41.444 2;3 3.469E-12 16311 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 183 181.5 2379800000 133170000 110230000 108520000 5316600 5074600 4560300 139910000 130880000 116540000 14356000 14198000 13221000 155100000 147510000 152130000 17939000 12969000 14595000 310190000 322850000 341380000 35555000 39354000 34227000 5496 1819 5354 102269;102270;102271;102272;102273;102274;102275;102276;102277;102278;102279;102280;102281;102282;102283;102284;102285;102286;102287;102288;102289;102290;102291;102292;102293;102294;102295;102296;102297;102298;102299;102300;102301;102302;102303;102304 62571;62572;62573;62574;62575;62576;62577;62578;62579;62580;62581;62582;62583;62584;62585;62586;62587;62588;62589;62590;62591;62592;62593 62579 19 ESVLPGGAIEGDRDDYAAR Unmodified 1989.9392 0.93919724 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 27.74 26.512 2;3 4.9601E-67 12403 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 348.78 335.1 5126800000 31208000 17331000 21625000 1035400 1296800 842700 651760000 622670000 644570000 541820000 355610000 375940000 230450000 188050000 201570000 59134000 53866000 56021000 283650000 257130000 295000000 63297000 82441000 90524000 5497 1088 5355 102305;102306;102307;102308;102309;102310;102311;102312;102313;102314;102315;102316;102317;102318;102319;102320;102321;102322;102323;102324;102325;102326;102327;102328;102329;102330;102331;102332;102333;102334;102335;102336;102337;102338;102339;102340;102341;102342;102343;102344;102345 62594;62595;62596;62597;62598;62599;62600;62601;62602;62603;62604;62605;62606;62607;62608;62609;62610;62611;62612;62613;62614;62615;62616;62617;62618;62619;62620;62621;62622;62623;62624;62625;62626;62627;62628;62629;62630 62605 37 ESVLPSNVAAR Unmodified 1141.6091 0.60913632 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 22.431 21.839 2 2.1545E-07 9127 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.38 118.6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5498 1423 5356 102346;102347;102348;102349;102350 62631;62632;62633;62634;62635 62635 5 ESVPSLL Unmodified 743.40652 0.40652033 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.244 41.71 2 0.16459 20582 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 42.773 42.773 107770000 9902300 13227000 9163200 430630 452450 499450 19044000 17456000 16771000 0 0 0 3738800 3184100 4641300 0 0 0 0 4591500 4668900 0 0 0 5499 64 5357 102351;102352;102353;102354;102355;102356;102357;102358;102359;102360;102361;102362;102363;102364 62636 62636 1 ESVSVVLGQHFFNR Unmodified 1617.8263 0.82633974 1 CON__ENSEMBL:ENSBTAP00000023055 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 2 1 1 1 1 1 24.342 23.529 4 0.16865 10260 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 8.599 4.0508 233160000 26027000 26556000 41758000 0 0 0 0 0 0 0 0 0 39990000 40815000 1541400 0 0 0 0 30360000 26110000 0 0 0 + 5500 1 5358 102365;102366;102367;102368;102369;102370;102371;102372;102373 62637 62637 1 ESVTIHR Unmodified 840.44537 0.44536545 302 P0A722 lpxA Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.028 11.835 2 0.0086175 3016 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.643 70.795 513600000 63976000 58976000 69052000 0 0 0 48626000 43254000 51696000 0 0 0 32587000 22015000 0 0 0 0 46467000 44412000 32540000 0 0 0 5501 302 5359 102374;102375;102376;102377;102378;102379;102380;102381;102382;102383;102384 62638;62639;62640;62641 62638 3 ESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFR Unmodified 4495.8959 0.89593405 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 44.397 42.882 5;6 2.1612E-37 20963 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 183.47 183.47 1199000000 14820000 17867000 18846000 17327000 17760000 7018300 74879000 87043000 70951000 47181000 47877000 42095000 81378000 91906000 64423000 8679700 26411000 19518000 139010000 134750000 103490000 26637000 26602000 12541000 5502 1427 5360 102385;102386;102387;102388;102389;102390;102391;102392;102393;102394;102395;102396;102397;102398;102399;102400;102401;102402;102403;102404;102405;102406;102407;102408;102409;102410;102411;102412;102413;102414;102415;102416;102417;102418;102419;102420;102421;102422;102423;102424;102425;102426 62642;62643;62644;62645;62646;62647;62648;62649;62650;62651;62652;62653;62654;62655;62656;62657;62658;62659;62660;62661;62662;62663;62664;62665;62666;62667;62668;62669;62670;62671;62672;62673 62659 31 ESWQDKVEVLSAGADDYVTKPFHIEEVMAR Unmodified 3448.6609 0.66092048 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 1 1 2 2 2 1 1 2 2 2 49.637 48.304 4;5 1.1031E-23 22628 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 175.39 173.81 1195900000 127620000 123550000 101480000 10366000 6866300 3648500 75625000 86054000 103920000 9211000 5341100 4110600 82733000 71294000 56523000 12942000 0 12180000 110880000 84659000 106880000 0 0 0 5503 1214 5361 102427;102428;102429;102430;102431;102432;102433;102434;102435;102436;102437;102438;102439;102440;102441;102442;102443;102444;102445;102446;102447;102448;102449;102450;102451;102452;102453;102454;102455;102456;102457;102458;102459;102460;102461 62674;62675;62676;62677;62678;62679;62680;62681;62682;62683;62684;62685;62686;62687;62688;62689;62690;62691;62692;62693;62694;62695;62696;62697;62698 62696 25 ESWQDLPQNK Unmodified 1243.5833 0.5833155 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.248 22.52 2 0.00059793 9829 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 92.653 92.653 1474000000 146020000 126490000 107880000 316520 0 0 126400000 117850000 124850000 0 0 0 116530000 98866000 107420000 0 0 0 131250000 137330000 132790000 0 0 0 5504 702 5362 102462;102463;102464;102465;102466;102467;102468;102469;102470;102471;102472;102473;102474 62699;62700;62701;62702;62703;62704;62705;62706;62707;62708;62709;62710 62701 12 ESWQPQQMSPLALER Unmodified 1798.8672 0.86721827 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 42.461 40.866 2 8.6952E-09 20057 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187.85 182.37 203230000 72434000 56933000 63441000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5704600 4717600 0 0 0 0 5505 1412 5363 102475;102476;102477;102478;102479 62711;62712;62713 62711 3 ESYAHLPMPR Unmodified 1199.5757 0.5757277 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.049 22.086 3 0.0052842 8982 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 64.04 57.152 347440000 34500000 32224000 27644000 460200 344890 0 32597000 27354000 32928000 0 0 0 22732000 18512000 19783000 0 0 0 32064000 34628000 31669000 0 0 0 5506 1019 5364 102480;102481;102482;102483;102484;102485;102486;102487;102488;102489;102490;102491;102492;102493 62714;62715;62716;62717;62718;62719;62720;62721;62722;62723 62718 10 ESYGYNGDYFLVYPIK Unmodified 1926.904 0.90398093 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.559 50.268 2 0.0080487 23705 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 67.385 61.352 265750000 21382000 20254000 22346000 0 0 0 16767000 16128000 19454000 0 2264000 3089800 26188000 20254000 24684000 0 0 0 26714000 22289000 22062000 1874100 0 0 5507 1172 5365 102494;102495;102496;102497;102498;102499;102500;102501;102502;102503;102504;102505;102506;102507;102508 62724;62725 62724 1 ESYKVPYGAVLAK Unmodified 1423.7711 0.77111627 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 27.624 26.423 2;3 8.4585E-09 8635 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 205.53 198.4 23826000000 28284000 36075000 28642000 13723000 12913000 11163000 27184000 36494000 28067000 1757700000 1711200000 1586000000 20442000 14632000 12021000 4817300000 3505600000 3525600000 36004000 36160000 31057000 2164900000 2044200000 2340900000 5508 458 5366 102509;102510;102511;102512;102513;102514;102515;102516;102517;102518;102519;102520;102521;102522;102523;102524;102525;102526;102527;102528;102529;102530;102531;102532;102533;102534;102535;102536;102537;102538;102539;102540;102541;102542;102543;102544;102545;102546;102547;102548;102549;102550;102551;102552;102553;102554 62726;62727;62728;62729;62730;62731;62732;62733;62734;62735;62736;62737;62738;62739;62740;62741;62742;62743;62744;62745;62746;62747;62748;62749;62750;62751;62752;62753;62754;62755;62756;62757;62758;62759;62760;62761;62762;62763;62764;62765 62728 40 ESYTKEDLLASGR Unmodified 1467.7205 0.72053726 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 19.599 20.137 2;3 8.9471E-40 7685 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 275.48 268.87 462010000 52319000 49255000 42585000 0 0 0 11180000 8389300 13527000 0 0 0 57566000 54480000 52801000 0 0 0 40846000 38796000 40266000 0 0 0 5509 271 5367 102555;102556;102557;102558;102559;102560;102561;102562;102563;102564;102565;102566;102567;102568;102569;102570;102571;102572;102573;102574;102575 62766;62767;62768;62769;62770;62771;62772;62773;62774;62775;62776;62777;62778;62779;62780;62781;62782;62783;62784;62785 62776 20 ETAAGSLTGR Unmodified 961.48287 0.48287317 1322 P28861 fpr Ferredoxin--NADP reductase yes yes 0 0 0 By MS/MS By MS/MS 1 1 12.7 13.48 2 5.1212E-05 3976 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.73 105.36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5510 1322 5368 102576;102577 62786;62787 62787 2 ETAAIFDLYSHLLSDTR Unmodified 1950.9687 0.96870646 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.057 52.884 3 5.0762E-05 25839 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 80.638 77.54 109920000 21034000 15329000 16797000 0 0 0 5770100 6197000 0 0 0 0 0 6526400 4831500 2321100 0 2160500 14525000 0 14429000 0 0 0 5511 1459 5369 102578;102579;102580;102581;102582;102583;102584;102585;102586;102587;102588 62788 62788 1 ETAAYGHFGR Unmodified 1107.5098 0.50975662 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 13.601 14.272 2;3 5.3499E-07 4439 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 174.69 148.79 3195800000 266000000 243250000 190790000 4795800 1815600 1859300 398140000 377680000 404950000 21766000 14677000 18787000 191470000 153980000 147870000 2109400 4053300 3833800 225180000 282070000 240710000 0 0 0 5512 388 5370 102589;102590;102591;102592;102593;102594;102595;102596;102597;102598;102599;102600;102601;102602;102603;102604;102605;102606;102607;102608;102609;102610;102611;102612;102613;102614;102615;102616;102617;102618;102619;102620;102621;102622;102623;102624 62789;62790;62791;62792;62793;62794;62795;62796;62797;62798;62799;62800;62801;62802;62803;62804;62805;62806;62807 62800 19 ETAEPGAMLMR Unmodified 1204.558 0.55802872 1923 P77649 ydiU UPF0061 protein YdiU yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 27.841 26.937 2 0.058778 11849 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 43.442 39.508 12928000 0 4580500 6218900 0 0 0 0 0 0 0 0 0 0 2128700 0 0 0 0 0 0 0 0 0 0 5513 1923 5371 102625;102626;102627 62808 62808 1 ETATTAPVQTASPAQTTATPAAGAK Unmodified 2341.1761 0.17613305 1072 P11557 damX Cell division protein DamX yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 20.658 20.846 2;3 2.0572E-40 8424 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 211.57 205.86 426130000 20833000 23180000 17570000 2934600 3886900 5626200 34351000 39006000 40100000 15885000 15054000 13275000 24450000 18472000 17635000 0 2182300 1783300 36289000 37203000 34016000 8867200 5750400 7778000 5514 1072 5372 102628;102629;102630;102631;102632;102633;102634;102635;102636;102637;102638;102639;102640;102641;102642;102643;102644;102645;102646;102647;102648;102649;102650;102651;102652;102653;102654;102655;102656;102657;102658;102659;102660;102661;102662;102663;102664;102665;102666;102667;102668 62809;62810;62811;62812;62813;62814;62815;62816;62817;62818;62819;62820;62821;62822;62823;62824;62825;62826;62827;62828;62829;62830;62831;62832;62833;62834;62835;62836;62837;62838;62839;62840;62841 62821 33 ETCHEVLK Unmodified 1014.4804 0.48043033 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.718 11.549 2 4.7926E-09 2793 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 203.57 177.74 3611600000 881170000 824990000 903540000 1384300 1463500 1380700 0 0 206690000 6115800 0 0 115690000 100150000 95290000 0 0 0 228040000 0 245750000 0 0 0 5515 657 5373 102669;102670;102671;102672;102673;102674;102675;102676;102677;102678;102679;102680;102681;102682;102683 62842;62843;62844;62845;62846;62847;62848;62849;62850;62851 62846 10 ETCPYCHR Unmodified 1121.4382 0.43824794 704 P0AC62 grxC Glutaredoxin-3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 10.456 11.272 2;3 0.0006403 2594 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142.11 142.11 1540800000 210070000 214260000 200470000 0 0 0 148450000 127810000 118700000 0 0 0 85627000 77942000 75131000 0 0 0 97565000 91829000 92935000 0 0 0 5516 704 5374 102684;102685;102686;102687;102688;102689;102690;102691;102692;102693;102694;102695;102696;102697;102698;102699;102700;102701;102702;102703;102704;102705;102706;102707 62852;62853;62854;62855;62856;62857;62858;62859;62860;62861;62862;62863 62861 11 ETDGLPYR Unmodified 949.45051 0.45051041 409 P0A890 tusA Sulfurtransferase TusA yes yes 0 0 0 By MS/MS By MS/MS 1 1 18.886 19.421 2 0.0040187 7505 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.244 63.962 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5517 409 5375 102708;102709 62864;62865 62864 2 ETDIAGILTSTHTIALVGASDKPDRPSYR Unmodified 3083.5887 0.58874181 1786 P75874 yccU Uncharacterized protein YccU yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 40.907 39.242 4;5 2.7755E-31 19615 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 188.23 184.12 1855300000 195060000 187200000 175940000 0 0 0 263090000 227820000 218970000 0 0 0 92933000 87303000 92131000 0 0 0 103450000 109440000 102010000 0 0 0 5518 1786 5376 102710;102711;102712;102713;102714;102715;102716;102717;102718;102719;102720;102721;102722;102723;102724;102725;102726;102727;102728;102729;102730;102731;102732;102733 62866;62867;62868;62869;62870;62871;62872;62873;62874;62875;62876;62877;62878;62879;62880;62881;62882;62883;62884;62885;62886;62887 62867 22 ETDIVTLPIQHDSAAELAQPLDVK Unmodified 2602.349 0.34901204 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 46.509 45.064 2;3 7.6351E-22 17776 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 158.91 157.07 1499000000 38438000 37238000 33267000 0 0 0 118180000 118880000 118860000 0 0 0 93808000 103280000 85384000 9823300 0 9974200 153190000 200900000 148750000 65413000 84622000 78954000 5519 205 5377 102734;102735;102736;102737;102738;102739;102740;102741;102742;102743;102744;102745;102746;102747;102748;102749;102750;102751;102752;102753;102754;102755;102756;102757;102758;102759;102760;102761 62888;62889;62890;62891;62892;62893;62894;62895;62896;62897;62898;62899;62900;62901;62902 62891 15 ETDIVTLPIQHDSAAELAQPLDVKDWK Unmodified 3031.5502 0.55023104 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 48.144 46.695 3;4 7.1742E-16 18485 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 142.2 132.81 165430000 0 0 0 0 0 0 0 0 0 10501000 0 0 0 0 0 4366700 0 0 0 0 0 48741000 45881000 55942000 5520 205 5378 102762;102763;102764;102765;102766;102767;102768;102769 62903;62904;62905;62906;62907;62908 62904 6 ETDLVTIGNDAWATGNPVFK Unmodified 2147.0535 0.053498719 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 52.216 50.871 2 6.5777E-18 24778 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 164.68 154.88 87086000 0 0 0 0 0 0 7434800 9844100 9810000 1557400 1374200 0 9177100 8798000 8516500 0 0 0 16668000 13906000 0 0 0 0 5521 844 5379 102770;102771;102772;102773;102774;102775;102776;102777;102778;102779 62909;62910 62909 2 ETEAIGHVVR Unmodified 1109.5829 0.58292157 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 12.927 13.753 2;3 1.0213E-08 4159 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.39 169.39 2667000000 217180000 96653000 265870000 8210000 6682000 7223300 209810000 237390000 197220000 1173700 1068700 0 256760000 213670000 204440000 0 0 0 240630000 271520000 230390000 1084800 0 0 5522 680 5380 102780;102781;102782;102783;102784;102785;102786;102787;102788;102789;102790;102791;102792;102793;102794;102795;102796;102797;102798;102799;102800;102801;102802;102803;102804;102805;102806;102807;102808;102809;102810;102811 62911;62912;62913;62914;62915;62916;62917;62918;62919;62920;62921;62922;62923;62924;62925;62926;62927;62928 62925 18 ETEALFR Unmodified 864.43413 0.43413207 1646 P62601 treF Cytoplasmic trehalase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 21.727 21.728 2 0.051871 9158 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 76.847 48.74 50976000 5158200 5831600 4119500 0 0 0 9737700 10607000 10408000 0 0 0 2584500 0 0 0 0 0 0 2528600 0 0 0 0 5523 1646 5381 102812;102813;102814;102815;102816;102817;102818;102819 62929 62929 0 ETESALTTR Unmodified 1006.4931 0.49310351 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.352 13.184 2 0.00035272 3835 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.26 108.9 94454000 9748000 11070000 7488600 0 0 0 10101000 11021000 8208500 0 0 0 5735800 4254000 4641000 0 0 0 8397900 7061100 6727100 0 0 0 5524 134 5382 102820;102821;102822;102823;102824;102825;102826;102827;102828;102829;102830;102831 62930;62931;62932 62932 3 ETESSAVR Unmodified 877.41412 0.4141249 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By MS/MS 1 1 8.3232 9.0458 2 0.015552 1900 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 69.998 37.528 6129600 0 2829700 3299900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5525 222 5383 102832;102833 62933 62933 1 ETESSAVREELAK Unmodified 1447.7155 0.71545188 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By MS/MS By matching By MS/MS 1 2 1 2 15.557 15.533 2;3 1.7426E-08 4114 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 152.07 137.86 16818000 0 0 0 0 0 0 0 0 0 1284900 0 0 0 0 0 4334600 4436800 6762000 0 0 0 0 0 0 5526 222 5384 102834;102835;102836;102837;102838;102839 62934;62935;62936 62934 3 ETEVQNEQPVVEEIVQAQEPVK Unmodified 2521.2548 0.2547773 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 44.129 42.696 3 4.2578E-10 19878 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 116.43 113.74 115380000 11004000 10836000 8673600 0 0 0 6378900 0 0 0 0 0 12495000 13337000 10946000 0 0 0 15698000 14365000 11642000 0 0 0 5527 1052 5385 102840;102841;102842;102843;102844;102845;102846;102847;102848;102849 62937;62938;62939;62940 62940 4 ETFADIGQTLAK Unmodified 1292.6612 0.66123147 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 37.774 35.761 2 0.0015203 17389 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 70.389 55.715 3639300000 522560000 491090000 449300000 0 0 0 653840000 618870000 541330000 2794600 2210500 3199700 0 0 0 0 0 0 0 354080000 0 0 0 0 5528 256 5386 102850;102851;102852;102853;102854;102855;102856;102857;102858;102859 62941 62941 1 ETFYVCKPSQGAGQC Unmodified 1730.7392 0.73924057 278 P0A6T3 galK Galactokinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.338 22.616 2 9.1472E-20 9762 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.53 205.53 199780000 26716000 30445000 26794000 0 0 0 22916000 22560000 22485000 0 0 0 6776400 4449300 4666000 0 0 0 9852800 12398000 9718200 0 0 0 5529 278 5387 102860;102861;102862;102863;102864;102865;102866;102867;102868;102869;102870;102871 62942;62943;62944;62945;62946;62947;62948;62949;62950;62951;62952 62950 11 ETGACNVQVIGK Unmodified 1274.6289 0.62888548 1025 P0AGK4 yhbY RNA-binding protein YhbY yes yes 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 17.5 18.239 2 0.015469 4911 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 60.828 47.059 24069000 0 3382600 0 6888700 7521400 6276200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5530 1025 5388 102872;102873;102874;102875 62953;62954 62953 0 ETGCAVNVK Unmodified 976.46478 0.46478027 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.678 12.464 2 0.11525 3452 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.016 34.947 456710000 144810000 133330000 146270000 0 0 0 6092100 9038600 7018300 0 0 0 0 0 2784200 0 0 0 3239400 0 4128900 0 0 0 5531 1816 5389 102876;102877;102878;102879;102880;102881;102882;102883;102884 62955 62955 0 ETGEIHYGR Unmodified 1060.4938 0.49377221 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 1 11.753 12.614 2;3 8.7157E-08 3460 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 186.13 178.56 3460100000 381980000 478790000 463230000 666500 490110 857720 306190000 275450000 275460000 0 0 0 217940000 228230000 235590000 0 0 0 227250000 206050000 161960000 0 0 0 5532 512 5390 102885;102886;102887;102888;102889;102890;102891;102892;102893;102894;102895;102896;102897;102898;102899;102900;102901;102902;102903;102904;102905;102906;102907;102908;102909;102910 62956;62957;62958;62959;62960;62961;62962;62963;62964;62965;62966;62967;62968;62969;62970;62971;62972;62973;62974;62975 62957 19 ETGEKDALVVMK Unmodified 1318.6803 0.68025235 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 18.84 19.182 2;3 1.5064E-05 6147 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 130.98 107.55 670460000 31008000 31437000 24920000 7520000 6190100 7712700 37529000 37673000 36787000 31080000 30229000 30473000 32823000 29107000 26285000 10257000 6049300 5136600 56152000 48505000 42232000 31000000 36591000 33768000 5533 547 5391 102911;102912;102913;102914;102915;102916;102917;102918;102919;102920;102921;102922;102923;102924;102925;102926;102927;102928;102929;102930;102931;102932;102933;102934;102935;102936;102937;102938;102939;102940;102941;102942;102943;102944;102945;102946;102947;102948;102949;102950;102951;102952;102953;102954;102955;102956 62976;62977;62978;62979;62980;62981;62982;62983;62984;62985;62986;62987;62988 62976 13 ETGIASVK Unmodified 803.43888 0.43888309 1855 P76402 yegP UPF0339 protein YegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.58 13.412 2 0.0053093 4041 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.833 56.221 1157700000 280430000 252650000 241120000 0 0 0 120060000 95308000 91661000 0 0 0 11384000 9888500 9828300 0 0 0 12256000 17788000 15308000 0 0 0 5534 1855 5392 102957;102958;102959;102960;102961;102962;102963;102964;102965;102966;102967;102968 62989;62990;62991;62992;62993 62991 3 ETGKPIYNAIVWQCR Unmodified 1833.9196 0.91958819 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 2 2 1 2 1 1 2 1 2 1 1 1 32.933 31.534 2;3 1.3305E-29 15382 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 236.16 222.96 4715000000 56157000 0 41934000 1388400 1673200 2261100 0 244650000 1066700000 6017400 5357100 6038900 796440000 626770000 0 7104700 4841000 5068800 809540000 226850000 789560000 4937600 5710900 5972200 5535 239 5393 102969;102970;102971;102972;102973;102974;102975;102976;102977;102978;102979;102980;102981;102982;102983;102984;102985;102986;102987;102988;102989;102990;102991;102992;102993;102994;102995;102996;102997 62994;62995;62996;62997;62998;62999;63000;63001;63002;63003;63004;63005;63006;63007;63008;63009;63010;63011 62996 18 ETGNKVNYQGIGSSGGVK Unmodified 1793.8908 0.89079049 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 14.729 15.555 2;3 6.0035E-18 5201 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 211.82 199.24 424170000 0 0 0 2275500 1454000 3212400 50206000 51040000 39669000 0 0 0 54942000 41496000 29292000 0 0 0 49918000 48936000 51725000 0 0 0 5536 994 5394 102998;102999;103000;103001;103002;103003;103004;103005;103006;103007;103008;103009;103010;103011;103012;103013;103014;103015;103016;103017;103018 63012;63013;63014;63015;63016;63017;63018;63019;63020;63021;63022;63023;63024;63025;63026;63027;63028;63029 63017 18 ETGQEAEYLPEGYR Unmodified 1640.7318 0.73183023 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.867 27.611 2 5.5389E-16 12795 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 202.68 202.68 257210000 15424000 14639000 15534000 0 0 0 19111000 19554000 16939000 0 0 0 22300000 19409000 15962000 0 0 0 29048000 36156000 33134000 0 0 0 5537 194 5395 103019;103020;103021;103022;103023;103024;103025;103026;103027;103028;103029;103030 63030;63031;63032;63033;63034;63035;63036;63037;63038;63039;63040 63033 11 ETGQSFLDNILSR Unmodified 1478.7365 0.73652168 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.871 48.465 2 2.3449E-17 23582 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 208.33 200.69 1368700000 151420000 132670000 124160000 0 0 0 126410000 116660000 122310000 0 0 0 83527000 76474000 72627000 0 0 0 121480000 120780000 120180000 0 0 0 5538 1298 5396 103031;103032;103033;103034;103035;103036;103037;103038;103039;103040;103041;103042 63041;63042;63043;63044;63045;63046;63047;63048;63049;63050;63051;63052 63045 12 ETHAMLLDVLSEQHEQHQDLFNSNR Unmodified 2990.3941 0.39408152 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 38.466 36.615 4;5 1.3024E-30 17771 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 188.69 186.22 641180000 43098000 34508000 51009000 3368200 2970300 2331300 16640000 39430000 40663000 16368000 14822000 19223000 44261000 44448000 38637000 0 0 0 58580000 69659000 60252000 15202000 14052000 11662000 5539 1197 5397 103043;103044;103045;103046;103047;103048;103049;103050;103051;103052;103053;103054;103055;103056;103057;103058;103059;103060;103061;103062;103063;103064;103065;103066;103067;103068;103069;103070;103071;103072;103073;103074;103075;103076;103077;103078;103079;103080;103081;103082;103083 63053;63054;63055;63056;63057;63058;63059;63060;63061;63062;63063;63064;63065;63066;63067;63068;63069 63063 16 ETHSPLQVIFQGSLLESGGRPVTR Unmodified 2607.3769 0.37689854 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 45.916 44.089 4 0.00020137 17763 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 69.548 68.541 44465000 0 0 0 0 0 0 4647800 0 4982300 6310100 6143700 4153000 0 0 3434700 0 0 0 6497200 0 5205500 0 3090400 0 5540 1877 5398 103084;103085;103086;103087;103088;103089;103090;103091;103092 63070 63070 1 ETIDEGLWDTLSAR Unmodified 1604.7682 0.76821574 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 2 1 1 2 2 2 1 1 50.105 48.684 2;3 6.528E-11 22984 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 166.69 163.9 1256700000 107380000 88788000 89947000 0 0 0 145700000 142740000 139400000 0 0 1231500 113490000 20352000 20599000 0 0 0 131880000 127030000 122340000 2201500 3604000 0 5541 702 5399 103093;103094;103095;103096;103097;103098;103099;103100;103101;103102;103103;103104;103105;103106;103107;103108;103109;103110;103111;103112;103113;103114;103115;103116;103117 63071;63072;63073;63074;63075;63076;63077;63078;63079;63080;63081;63082;63083;63084;63085;63086;63087;63088;63089;63090;63091;63092 63089 22 ETIHLGALDEDSIVYIHK Unmodified 2052.0528 0.052770437 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 38.325 36.704 3;4 7.4356E-10 17831 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 122.75 121.21 569280000 57226000 40077000 55503000 543090 0 734120 57738000 44300000 53181000 1409500 1463900 1292800 28428000 33094000 28601000 2747600 3133100 3381800 57459000 52972000 44080000 1083800 0 836020 5542 1845 5400 103118;103119;103120;103121;103122;103123;103124;103125;103126;103127;103128;103129;103130;103131;103132;103133;103134;103135;103136;103137;103138;103139;103140;103141;103142;103143;103144;103145;103146;103147;103148;103149;103150;103151 63093;63094;63095;63096;63097;63098;63099;63100 63096 8 ETIIVHEIPYQVNK Unmodified 1681.9039 0.90392136 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 30.201 28.751 2;3 2.1422E-45 13415 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 335.25 319.98 3881900000 314950000 277900000 237260000 7951500 5276800 5740700 297280000 297930000 270990000 66496000 61161000 56872000 258280000 332510000 249320000 16401000 6403700 7271200 317520000 374040000 345330000 23059000 27834000 24137000 5543 882 5401 103152;103153;103154;103155;103156;103157;103158;103159;103160;103161;103162;103163;103164;103165;103166;103167;103168;103169;103170;103171;103172;103173;103174;103175;103176;103177;103178;103179;103180;103181;103182;103183;103184;103185;103186;103187;103188;103189;103190;103191;103192;103193;103194;103195;103196;103197 63101;63102;63103;63104;63105;63106;63107;63108;63109;63110;63111;63112;63113;63114;63115;63116;63117;63118;63119;63120;63121;63122;63123;63124;63125;63126;63127;63128;63129;63130;63131;63132;63133;63134;63135;63136;63137;63138;63139 63124 39 ETISETYDLEYGTDQLEIHVDAIKPGDK Unmodified 3178.5194 0.51938442 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1 1 2 1 2 45.766 44.347 4 8.0953E-06 21391 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.711 78.654 260730000 10933000 28810000 21289000 0 0 0 0 42178000 0 0 0 0 24302000 24214000 0 0 0 0 41323000 27136000 40550000 0 0 0 5544 1736 5402 103198;103199;103200;103201;103202;103203;103204;103205;103206;103207;103208;103209;103210 63140;63141;63142;63143;63144;63145;63146 63143 7 ETLAVCER Unmodified 976.46478 0.46478027 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.52 16.081 2 0.0013173 4033 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 109.86 73.982 286240000 14331000 13470000 12906000 7898200 6177600 7002800 24613000 23419000 24259000 10643000 10060000 11293000 13512000 10104000 10275000 5335200 3208400 3293400 20628000 19962000 16319000 6498300 5831600 5193500 5545 559 5403 103211;103212;103213;103214;103215;103216;103217;103218;103219;103220;103221;103222;103223;103224;103225;103226;103227;103228;103229;103230;103231;103232;103233;103234 63147;63148;63149;63150;63151 63149 5 ETLEDAVK Unmodified 903.45493 0.45492709 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 3 1 1 1 2 2 2 1 2 2 2 2 2 1 2 1 2 2 2 1 1 1 18.664 19.056 1;2 0.0019937 7242 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 104.21 88.055 37234000000 1004200000 979870000 885660000 2633400 3124500 3393000 6333500000 6525800000 6722500000 2480900 40744000 38217000 3241800000 3031400000 2958200000 11147000 9708000 8990400 1747000000 1838000000 1832800000 5128300 4501800 3483200 5546 1717 5404 103235;103236;103237;103238;103239;103240;103241;103242;103243;103244;103245;103246;103247;103248;103249;103250;103251;103252;103253;103254;103255;103256;103257;103258;103259;103260;103261;103262;103263;103264;103265;103266;103267;103268;103269;103270;103271;103272;103273;103274 63152;63153;63154;63155;63156;63157;63158;63159;63160;63161;63162;63163;63164;63165;63166;63167;63168;63169;63170;63171;63172;63173;63174 63159 22 ETLEDAVKHPEK Unmodified 1394.7042 0.70415892 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 14.773 15.318 2;3 9.479E-18 5026 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 224.75 210.55 1424500000 11420000 9577300 11411000 1994500 2158900 1842400 59725000 339990000 311820000 39286000 28775000 31268000 110660000 107760000 104540000 7755600 5826900 9703900 79303000 61079000 80186000 3264900 3198000 1951400 5547 1717 5405 103275;103276;103277;103278;103279;103280;103281;103282;103283;103284;103285;103286;103287;103288;103289;103290;103291;103292;103293;103294;103295;103296;103297;103298;103299;103300;103301;103302;103303;103304;103305;103306;103307;103308;103309;103310;103311 63175;63176;63177;63178;63179;63180;63181;63182;63183;63184;63185;63186;63187;63188;63189;63190;63191;63192;63193;63194;63195;63196;63197;63198;63199;63200 63188 26 ETLEDAVKHPEKYPQLTIR Unmodified 2266.1957 0.19574628 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 1 3 3 3 3 2 2 2 2 2 30.864 29.365 3;4;5 1.2851E-06 11210 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 93.684 93.153 516180000 0 0 0 11992000 14318000 12653000 8713600 0 0 107530000 101400000 109210000 0 0 0 36589000 33317000 34217000 0 0 0 14430000 15544000 16272000 5548 1717 5406 103312;103313;103314;103315;103316;103317;103318;103319;103320;103321;103322;103323;103324;103325;103326;103327;103328;103329;103330;103331;103332;103333;103334;103335;103336;103337;103338;103339;103340;103341 63201;63202;63203;63204;63205;63206;63207;63208;63209;63210;63211;63212;63213;63214;63215;63216 63211 14 ETLFLHNILCGAK Unmodified 1514.7915 0.79153413 1529 P39353 yjhC Uncharacterized oxidoreductase YjhC yes yes 0 0 0 By MS/MS By matching By matching 2 1 1 28.599 27.56 3 0.16931 12642 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 5.037 0.93523 21650000 0 0 14180000 0 0 0 0 0 0 0 0 0 4078800 0 3391000 0 0 0 0 0 0 0 0 0 5549 1529 5407 103342;103343;103344;103345 63217 63217 1 ETLGSYEK Unmodified 925.43928 0.43927702 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.702 14.345 2 0.014409 4517 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 71.877 65.423 142780000 0 0 0 0 0 0 12707000 15485000 12905000 5281400 6038400 4284700 10806000 11227000 11845000 0 0 0 18302000 14512000 15256000 0 0 4133500 5550 1494 5408 103346;103347;103348;103349;103350;103351;103352;103353;103354;103355;103356;103357;103358 63218;63219;63220;63221;63222;63223;63224;63225 63221 8 ETLLTMAER Unmodified 1062.5379 0.53794521 1139 P17443 murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 31.356 29.439 2 0.048244 11208 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 59.245 52.522 16798000 0 0 0 1107600 1318900 1353600 0 0 0 1884500 2584000 2665300 0 0 0 0 0 0 0 0 0 1787600 2136900 1959700 5551 1139 5409 103359;103360;103361;103362;103363;103364;103365;103366;103367 63226;63227 63227 1 ETLNLLK Unmodified 829.49092 0.49091866 1874 P76569 yfgD Uncharacterized protein YfgD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 26.975 25.841 2 0.0071055 12109 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 92.692 57.587 1509000000 118520000 114710000 91100000 0 297900 0 140090000 149990000 148790000 0 0 0 120450000 103700000 96134000 0 0 0 156830000 135170000 133200000 0 0 0 5552 1874 5410 103368;103369;103370;103371;103372;103373;103374;103375;103376;103377;103378;103379;103380;103381 63228;63229;63230;63231;63232;63233;63234;63235;63236;63237;63238;63239 63229 12 ETLNWPMIGEQLTR Unmodified 1686.8399 0.83994089 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 50.803 49.473 2 3.4394E-06 24294 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.76 113.23 97937000 13629000 13546000 0 0 0 0 8672300 7811800 8577500 0 0 0 12933000 9288800 9330600 0 0 0 0 14148000 0 0 0 0 5553 139 5411 103382;103383;103384;103385;103386;103387;103388;103389;103390 63240;63241;63242 63240 3 ETLSELSVEEVFNR Unmodified 1650.8101 0.81008055 991 P0AG76 sbcD Nuclease SbcCD subunit D yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 48.386 47.185 2 5.4661E-05 22997 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.441 78.209 28410000 0 4674500 5135300 0 0 0 0 0 0 0 0 0 3672600 3507500 2597200 0 0 0 0 4045300 4777900 0 0 0 5554 991 5412 103391;103392;103393;103394;103395;103396;103397 63243 63243 1 ETLSIVGWR Unmodified 1059.5713 0.57129425 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.638 37.956 2 0.00025088 18326 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 136.16 125.74 808600000 140680000 139690000 121740000 0 1049500 972900 66231000 60016000 61831000 0 0 0 28208000 27255000 35205000 0 0 0 39928000 43474000 42321000 0 0 0 5555 218 5413 103398;103399;103400;103401;103402;103403;103404;103405;103406;103407;103408;103409;103410;103411 63244;63245;63246;63247;63248;63249;63250;63251;63252;63253;63254;63255 63249 10 ETLYSFDQLK Unmodified 1242.6132 0.61321864 1725 P68767 pepA Cytosol aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 37.445 35.598 2 0.00071946 17153 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.948 80.185 56920000 13225000 17668000 11250000 0 0 393210 5612100 3814900 4145200 0 0 811390 0 0 0 0 0 0 0 0 0 0 0 0 5556 1725 5414 103412;103413;103414;103415;103416;103417;103418;103419 63256;63257;63258 63257 3 ETNVVLKPGMTFTIEPMVNAGK Unmodified 2375.2229 0.22288901 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 44.643 43.128 2;3 8.6542E-28 21001 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 193.47 186.79 991300000 113870000 110250000 106460000 0 0 0 70296000 66741000 66310000 0 0 0 68921000 53462000 54084000 0 0 0 92154000 96733000 92029000 0 0 0 5557 829 5415 103420;103421;103422;103423;103424;103425;103426;103427;103428;103429;103430;103431;103432;103433;103434;103435;103436;103437;103438;103439;103440;103441;103442;103443 63259;63260;63261 63259 3 ETPADAEVISHQLMLR Unmodified 1808.9091 0.90908309 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.302 35.581 3 1.004E-08 16590 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 124.09 123.73 3944800000 315750000 294700000 260340000 1394400 1562400 1388600 295420000 310200000 299690000 1421100 0 1944700 326810000 306160000 339190000 0 1638600 0 384690000 426420000 372710000 1600300 1717900 0 5558 1120 5416 103444;103445;103446;103447;103448;103449;103450;103451;103452;103453;103454;103455;103456;103457;103458;103459;103460;103461;103462;103463 63262;63263;63264;63265;63266;63267;63268;63269;63270;63271;63272;63273 63271 12 ETPAPVPTLSPLR Unmodified 1376.7664 0.76636524 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.002 35.264 2 7.0277E-07 17300 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.91 137.61 371530000 31923000 34427000 29452000 0 0 0 32935000 31878000 27487000 2366900 2000200 2289800 27043000 23849000 27173000 823740 0 0 29126000 33072000 34911000 0 0 775650 5559 1482 5417 103464;103465;103466;103467;103468;103469;103470;103471;103472;103473;103474;103475;103476;103477;103478;103479;103480 63274;63275;63276;63277;63278;63279;63280;63281;63282;63283 63276 10 ETPCDPRPQAEIR Unmodified 1567.7413 0.74128948 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.392 15.157 2 0.0017709 4979 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 67.726 42.871 65878000 6709500 6347200 7494400 0 0 0 5283500 6217700 3821400 0 0 0 3830800 3745900 3332100 0 0 0 7598100 4875400 6622500 0 0 0 5560 1794 5418 103481;103482;103483;103484;103485;103486;103487;103488;103489;103490;103491;103492 63284;63285;63286;63287;63288;63289 63285 6 ETPIAVR Unmodified 784.4443 0.44430282 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 2 14.724 15.494 2 0.0057093 5143 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.513 71.196 905910000 62020000 66954000 61644000 0 0 0 72291000 74763000 67626000 0 0 0 84407000 59797000 53507000 0 0 0 109880000 88050000 104970000 0 0 0 5561 197 5419 103493;103494;103495;103496;103497;103498;103499;103500;103501;103502;103503;103504;103505;103506 63290;63291;63292;63293;63294;63295;63296;63297;63298 63293 8 ETPNATWPVHAVITNSTYDGLLYNTDFIK Unmodified 3279.6088 0.60880855 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 53.439 51.967 3 8.6208E-06 25768 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 75.141 68.757 152870000 4106800 0 0 0 0 0 30321000 29666000 31632000 0 0 0 15827000 22515000 18802000 0 0 0 0 0 0 0 0 0 5562 520 5420 103507;103508;103509;103510;103511;103512;103513 63299;63300;63301;63302;63303;63304 63300 6 ETPNVEEVFHR Unmodified 1355.647 0.64697839 1655 P63183 kup Low affinity potassium transport system protein kup yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.542 26.067 3 0.023892 9960 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 36.303 33.517 48999000 0 0 0 0 884270 933850 6096900 5860300 0 2848500 2585800 1575700 4283400 0 4729900 0 0 0 5789000 4498700 6260600 1357500 1294500 0 5563 1655 5421 103514;103515;103516;103517;103518;103519;103520;103521;103522;103523;103524;103525;103526;103527 63305 63305 1 ETPYEPMPENVEEIVAQAK Unmodified 2173.0249 0.024900707 1106 P15078 cstA Carbon starvation protein A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 48.364 47.089 2 5.7516E-14 23104 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 147.73 145.75 50837000 9893100 13679000 10743000 3292700 4442700 4234000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4552500 0 0 0 5564 1106 5422 103528;103529;103530;103531;103532;103533;103534 63306;63307;63308;63309;63310 63309 5 ETPYVPIPEGGVK Unmodified 1384.7238 0.72383172 1535 P39396 yjiY Inner membrane protein YjiY yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 33.718 32.082 2 0.00085585 15295 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 71.524 65.741 98663000 0 0 0 0 0 0 9031900 8896000 9357300 2594700 0 0 5163100 4282000 5188900 0 0 0 16226000 19383000 18540000 0 0 0 5565 1535 5423 103535;103536;103537;103538;103539;103540;103541;103542;103543;103544 63311;63312 63311 2 ETQDSETLDTADALEQK Unmodified 1892.8487 0.84871048 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 27.76 26.96 2;3 1.8082E-39 8792 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 252.04 250.6 271180000 15932000 17145000 13748000 889890 956310 963400 0 5872700 4567600 0 0 0 4731500 4559900 3651300 85033000 41990000 45768000 8596000 6071200 10707000 0 0 0 5566 1249 5424 103545;103546;103547;103548;103549;103550;103551;103552;103553;103554;103555;103556;103557;103558;103559;103560;103561;103562;103563;103564 63313;63314;63315;63316;63317;63318;63319;63320 63315 8 ETQIANMR Unmodified 961.46511 0.46511462 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.004 14.685 2 0.0060327 4611 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 100.07 91.244 44934000 3787600 1922000 2679800 668350 821380 932610 0 0 4288700 3126100 2619800 2823600 3464900 0 2441100 0 0 0 4455900 4245300 4040000 1496200 1120700 0 5567 1300 5425 103565;103566;103567;103568;103569;103570;103571;103572;103573;103574;103575;103576;103577;103578;103579;103580;103581 63321;63322;63323 63322 0 ETQPIDR Unmodified 857.4243 0.42429566 631 P0AB61 yciN Protein YciN yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.835 11.608 2 0.026369 3011 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 70.716 60.532 714370000 194550000 0 0 0 0 0 154740000 153490000 139230000 0 2437600 0 11374000 11335000 9951100 0 0 0 14328000 12053000 10880000 0 0 0 5568 631 5426 103582;103583;103584;103585;103586;103587;103588;103589;103590;103591;103592 63324;63325 63325 2 ETSAADVPLAIDHFR Unmodified 1640.8158 0.81583463 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 1 1 2 35.59 33.93 2;3 4.6874E-09 16575 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 184.44 175.01 2298500000 625390000 618710000 553950000 3476400 3400000 4406800 132240000 152330000 127480000 2410300 0 0 9888500 0 7253700 0 0 0 17692000 19196000 20717000 0 0 0 5569 1486 5427 103593;103594;103595;103596;103597;103598;103599;103600;103601;103602;103603;103604;103605;103606;103607;103608;103609;103610;103611;103612;103613;103614 63326;63327;63328;63329;63330;63331;63332;63333;63334;63335;63336;63337 63330 12 ETSFVYTR Unmodified 1001.4818 0.48181054 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 20.24 20.738 2 0.0037231 8171 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.752 48.525 287460000 101690000 93681000 92089000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5570 1141 5428 103615;103616;103617 63338;63339;63340 63338 3 ETSHVMLCGNPQMVR Unmodified 1757.8011 0.80112932 1322 P28861 fpr Ferredoxin--NADP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 21.922 21.95 2;3 3.1089E-21 8963 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 224.64 220.88 336000000 51794000 51979000 36867000 0 0 0 24756000 24042000 20774000 0 0 0 16270000 16057000 17109000 0 0 0 27760000 23534000 25055000 0 0 0 5571 1322 5429 103618;103619;103620;103621;103622;103623;103624;103625;103626;103627;103628;103629;103630;103631;103632;103633;103634;103635;103636;103637;103638;103639 63341;63342;63343;63344;63345;63346;63347;63348;63349;63350;63351;63352;63353 63348 13 ETTAPALK Unmodified 829.45453 0.45453316 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.692 13.566 2 0.089969 3677 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 51.335 35.182 356130000 0 0 2992600 0 0 0 14401000 8932800 12615000 0 0 0 102370000 96106000 99674000 0 0 0 2005200 10668000 6366600 0 0 0 5572 647 5430 103640;103641;103642;103643;103644;103645;103646;103647;103648;103649 63354;63355;63356 63356 3 ETTAQPEGER Unmodified 1116.5047 0.50473083 69 P02916 malF Maltose transport system permease protein MalF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.372 11.172 2 0.0015894 2079 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 99.136 94.779 212570000 33681000 0 28803000 0 77784 0 21675000 18577000 15592000 0 7351400 0 14537000 8611000 11455000 0 0 0 21242000 18867000 12103000 0 0 0 5573 69 5431 103650;103651;103652;103653;103654;103655;103656;103657;103658;103659;103660;103661;103662 63357 63357 1 ETTFNELMNQQA Unmodified 1424.6242 0.62419403 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 42.465 40.649 1;2 5.3248E-23 19273 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 234.71 232.62 3663400000 223140000 191020000 177840000 4117800 4204000 3494000 244990000 244430000 231720000 9029900 8096200 8769600 322550000 344890000 327010000 0 0 0 432400000 461860000 408830000 4568300 5045700 5444600 5574 396 5432 103663;103664;103665;103666;103667;103668;103669;103670;103671;103672;103673;103674;103675;103676;103677;103678;103679;103680;103681;103682;103683;103684;103685;103686;103687;103688;103689;103690;103691;103692;103693;103694;103695 63358;63359;63360;63361;63362;63363;63364;63365;63366;63367;63368;63369;63370;63371;63372 63370 15 ETTHVTGSK Unmodified 958.47197 0.47197413 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.5951 8.056 2 0.00043925 930 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.22 99.804 95338000 0 0 0 0 0 0 11648000 10542000 11882000 5398400 5769900 4447900 11702000 9625000 0 988440 853180 955200 8845300 0 10870000 522630 504400 783500 5575 1836 5433 103696;103697;103698;103699;103700;103701;103702;103703;103704;103705;103706;103707;103708;103709;103710;103711 63373;63374;63375;63376;63377;63378;63379;63380 63376 6 ETTIVWEK Unmodified 1004.5179 0.51786169 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.013 24.058 2 0.0053093 10618 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.833 53.475 9382900000 182440000 165080000 177550000 0 0 0 1094000000 1135500000 1107700000 8717300 5899500 0 879880000 767110000 807630000 4360300 3595800 3922800 1094400000 964830000 971500000 0 4119600 4724200 5576 239 5434 103712;103713;103714;103715;103716;103717;103718;103719;103720;103721;103722;103723;103724;103725;103726;103727;103728;103729;103730 63381;63382;63383;63384;63385;63386;63387;63388;63389;63390;63391;63392;63393;63394;63395;63396 63388 16 ETTPELDALHK Unmodified 1252.6299 0.62993134 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 19.715 20.061 3 0.010173 6488 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 57.836 55.424 162930000 6238200 4850100 3376200 0 0 0 15321000 15949000 15331000 5549900 3754700 4151100 11470000 10088000 12786000 0 0 0 13353000 14311000 23531000 0 0 2875100 5577 1047 5435 103731;103732;103733;103734;103735;103736;103737;103738;103739;103740;103741;103742;103743;103744;103745;103746;103747;103748 63397;63398;63399;63400;63401;63402;63403;63404;63405;63406;63407;63408 63397 12 ETTTPSEQK Unmodified 1019.4771 0.47711909 879 P0AER0 glpF Glycerol uptake facilitator protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.1398 7.7751 2 0.00026031 1120 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 121.31 117.33 488140000 0 0 0 0 0 0 31609000 38481000 37563000 31249000 34019000 21044000 45159000 43535000 37426000 0 0 0 43886000 46332000 45153000 11105000 10436000 11140000 5578 879 5436 103749;103750;103751;103752;103753;103754;103755;103756;103757;103758;103759;103760;103761;103762;103763;103764 63409;63410;63411;63412;63413;63414;63415;63416;63417;63418;63419;63420;63421;63422;63423;63424 63422 16 ETTWFNPGTTSLAEGLPYVGLTEQDVQDAHAR Unmodified 3502.6641 0.6640916 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.592 52.152 3 5.1117E-25 25794 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 165.34 161.74 332840000 17279000 18407000 16491000 0 0 0 33468000 31325000 35191000 0 0 0 17733000 21475000 18847000 0 0 0 45062000 37302000 40261000 0 0 0 5579 51 5437 103765;103766;103767;103768;103769;103770;103771;103772;103773;103774;103775;103776 63425;63426;63427;63428;63429 63427 5 ETVAYAHAHDVK Unmodified 1339.6521 0.65206377 109 P05194 aroD 3-dehydroquinate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 11.012 11.897 2 2.6553E-06 2780 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 140.49 96.282 72976000 0 24764000 0 0 0 0 0 0 0 0 0 0 13018000 12637000 9206300 0 0 0 0 13351000 0 0 0 0 5580 109 5438 103777;103778;103779;103780;103781 63430;63431;63432;63433;63434 63434 5 ETVDFVDNYDGTEK Unmodified 1630.6999 0.6998614 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.843 30.487 2 1.2179E-14 14307 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 232 218.8 932080000 66373000 52293000 51025000 0 0 0 80777000 76721000 86795000 0 0 0 86318000 69746000 67841000 0 0 0 108450000 98575000 87165000 0 0 0 5581 882 5439 103782;103783;103784;103785;103786;103787;103788;103789;103790;103791;103792;103793 63435;63436;63437;63438;63439;63440;63441;63442;63443;63444;63445;63446 63439 12 ETVDFVDNYDGTEKIPDVMPTK Unmodified 2512.1679 0.16793613 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.023 41.258 3 2.3254E-07 20534 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 109.08 106.15 301980000 23600000 20061000 18314000 0 0 0 22046000 22296000 19392000 3620900 2696800 0 23972000 25289000 25444000 0 0 0 31213000 30000000 32204000 0 0 1829400 5582 882 5440 103794;103795;103796;103797;103798;103799;103800;103801;103802;103803;103804;103805;103806;103807;103808 63447;63448;63449;63450;63451;63452;63453;63454 63447 8 ETVDFYDLK Unmodified 1128.5339 0.53390569 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.979 34.416 2 0.0068029 16920 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.628 60.111 2445000000 205460000 218160000 212940000 528010 0 734280 188770000 175980000 153950000 0 0 0 187230000 183050000 189550000 0 0 0 237090000 248090000 243430000 0 0 0 5583 161 5441 103809;103810;103811;103812;103813;103814;103815;103816;103817;103818;103819;103820;103821;103822 63455;63456 63455 1 ETVEAMR Unmodified 834.39055 0.39055269 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 12.214 13.222 2 0.026174 3574 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 70.912 40.244 51841000 0 0 0 0 0 0 0 0 0 0 0 0 17102000 18513000 16226000 0 0 0 0 0 0 0 0 0 5584 691 5442 103823;103824;103825 63457 63457 1 ETVEAYHMK Oxidation (M) 1122.5016 0.5015597 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 10.844 11.675 2 0.003798 2833 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 83.206 80.228 162440000 0 6214700 8913900 0 0 0 26651000 20137000 22639000 0 0 0 12884000 12107000 9919900 0 0 0 11525000 13065000 18389000 0 0 0 5585 876 5443 103826;103827;103828;103829;103830;103831;103832;103833;103834;103835;103836 63458;63459;63460;63461;63462;63463;63464 63459 402 7 ETVEAYHMK Unmodified 1106.5066 0.50664508 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 3 2 1 3 3 3 3 3 3 12.66 13.437 1;2;3 0.00031699 3855 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.37 110.89 3047000000 172350000 137550000 155080000 0 0 0 333380000 318510000 280400000 2880800 0 2714100 320930000 289680000 268930000 0 0 0 261070000 247000000 256480000 0 0 0 5586 876 5443 103837;103838;103839;103840;103841;103842;103843;103844;103845;103846;103847;103848;103849;103850;103851;103852;103853;103854;103855;103856;103857;103858;103859;103860;103861;103862;103863;103864;103865;103866;103867;103868;103869;103870;103871;103872 63465;63466;63467;63468;63469;63470;63471;63472;63473;63474;63475;63476;63477;63478;63479;63480;63481;63482;63483 63469 18 ETVLNLLALR Unmodified 1140.6867 0.68665836 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.573 50.383 2 4.3896E-09 24560 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 194.2 174.42 2581200000 227520000 188400000 181630000 1002000 1538400 1230900 245130000 241400000 232020000 1489900 803380 1740000 182620000 190960000 190800000 923320 1631200 0 253600000 212890000 221340000 1215500 0 1264800 5587 702 5444 103873;103874;103875;103876;103877;103878;103879;103880;103881;103882;103883;103884;103885;103886;103887;103888;103889;103890;103891;103892;103893;103894 63484;63485;63486;63487;63488;63489;63490;63491;63492;63493;63494;63495;63496;63497;63498;63499;63500;63501;63502 63498 12 ETVPEER Unmodified 858.40831 0.40831125 1017 P0AGG2 tesB Acyl-CoA thioesterase 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.367 12.2 2 0.0067903 3156 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.006 87.552 235550000 44497000 36435000 27126000 0 0 0 13374000 19883000 17585000 0 0 0 16595000 10508000 11606000 0 0 0 13718000 11210000 13011000 0 0 0 5588 1017 5445 103895;103896;103897;103898;103899;103900;103901;103902;103903;103904;103905;103906 63503;63504 63504 2 ETVTVEPK Unmodified 901.47566 0.47566253 425 P0A8F4 udk Uridine kinase yes yes 0 0 0 By MS/MS 1 13.446 13.602 2 0.031672 3380 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 62.659 45.365 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5589 425 5446 103907 63505 63505 1 ETWDLFGITFDGHPNLR Unmodified 2016.9694 0.96937516 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 1 2 2 2 1 2 2 2 2 2 2 2 2 1 1 1 53.808 52.383 2;3 7.8555E-16 25656 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 180.18 164.43 1119100000 49908000 40424000 49981000 9543800 14306000 14455000 73815000 76793000 68536000 35513000 55544000 39027000 65019000 67958000 58664000 0 0 0 103800000 106320000 99388000 29664000 32067000 28379000 5590 1426 5447 103908;103909;103910;103911;103912;103913;103914;103915;103916;103917;103918;103919;103920;103921;103922;103923;103924;103925;103926;103927;103928;103929;103930;103931;103932;103933;103934;103935;103936;103937;103938;103939;103940;103941;103942;103943 63506;63507;63508;63509;63510;63511;63512;63513;63514;63515;63516;63517;63518;63519;63520;63521;63522;63523;63524;63525;63526;63527 63515 22 ETWDLFGITFDGHPNLRR Unmodified 2173.0705 0.070486187 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 49.147 47.577 4 0.0010803 18814 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 50.787 49.224 35710000 0 0 0 2634000 0 0 0 0 0 3898200 8778900 3785500 0 0 0 0 0 0 0 0 0 6120000 4796100 5697700 5591 1426 5448 103944;103945;103946;103947;103948;103949;103950 63528;63529 63528 2 ETYNILK Unmodified 879.47018 0.47018322 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.551 21.996 2 0.0085269 9461 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 88.734 65.715 856380000 58653000 62955000 62914000 0 0 0 90744000 86837000 84914000 0 0 0 57958000 53432000 50010000 0 0 0 75185000 74144000 98633000 0 0 0 5592 1215 5449 103951;103952;103953;103954;103955;103956;103957;103958;103959;103960;103961;103962 63530;63531;63532;63533;63534;63535;63536;63537;63538;63539 63533 10 EVAAEFSNPVMLYSIGK Unmodified 1853.9233 0.92333617 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.823 49.485 2 0.034273 23178 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 67.997 62.273 432470000 31228000 33464000 28899000 0 0 0 21284000 28254000 27220000 0 0 0 31256000 21738000 20474000 0 0 0 61045000 65208000 53000000 3283000 2700700 3419800 5593 1169 5450 103963;103964;103965;103966;103967;103968;103969;103970;103971;103972;103973;103974;103975;103976;103977 63540 63540 0 EVAAQQVSDQQLETAR Unmodified 1771.8701 0.87005504 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 1 2 2 2 2 2 2 21.198 21.476 2;3 1.0471E-49 8458 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 336.45 327.49 1795200000 181520000 222280000 168840000 1889900 1014800 1978700 334400000 315770000 340440000 5053900 0 3190500 30652000 27992000 26986000 0 0 0 44512000 50520000 38123000 0 0 0 5594 1191 5451 103978;103979;103980;103981;103982;103983;103984;103985;103986;103987;103988;103989;103990;103991;103992;103993;103994;103995;103996;103997;103998;103999;104000;104001;104002;104003;104004;104005;104006;104007;104008 63541;63542;63543;63544;63545;63546;63547;63548;63549;63550;63551;63552;63553;63554;63555;63556;63557;63558;63559;63560;63561;63562;63563;63564;63565 63558 25 EVADALALR Unmodified 956.5291 0.52909508 1885 P77211 cusC Cation efflux system protein CusC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 31.277 29.881 2 0.002402 13508 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 85.265 35.906 84814000 0 3532600 0 0 0 0 10100000 9598700 10373000 0 0 0 8756100 7729600 6975900 0 0 0 7221200 9491200 11036000 0 0 0 5595 1885 5452 104009;104010;104011;104012;104013;104014;104015;104016;104017;104018 63566;63567;63568;63569;63570;63571 63569 6 EVADFDISVAAYPEVHPEAK Unmodified 2186.0532 0.053164368 898 P0AEZ1 metF 5,10-methylenetetrahydrofolate reductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 41.606 39.548 3 0.0031756 19561 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 53.188 49.8 52364000 5749600 4622000 4173200 0 0 0 14096000 10386000 10069000 1301700 1038400 927640 0 0 0 0 0 0 0 0 0 0 0 0 5596 898 5453 104019;104020;104021;104022;104023;104024;104025;104026;104027 63572;63573 63573 2 EVAEAWEVLSDEQR Unmodified 1659.774 0.77402939 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 42.193 40.347 3 0.14492 19815 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 23.481 21.006 45116000 6110700 6778900 5650200 0 0 0 9770800 8372100 8432800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5597 1440 5454 104028;104029;104030;104031;104032;104033 63574 63574 0 EVAETVLGK Unmodified 944.51786 0.51786169 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 19.476 19.952 2 0.0025003 7708 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 84.916 47.94 350200000 29506000 31713000 26727000 379270 0 0 24499000 27468000 22682000 0 0 0 31412000 27619000 25472000 0 0 0 31030000 37293000 34403000 0 0 0 5598 1256 5455 104034;104035;104036;104037;104038;104039;104040;104041;104042;104043;104044;104045;104046 63575;63576;63577 63576 3 EVAHIIIDATNEPSQVISEIR Unmodified 2333.2227 0.22268931 234 P0A6E1 aroL Shikimate kinase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.761 44.297 3 8.3197E-28 21930 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 182.76 174.87 202170000 32859000 24096000 35285000 0 0 0 12072000 14341000 12678000 0 0 0 7870100 6317500 9939100 0 0 0 15401000 18729000 12584000 0 0 0 5599 234 5456 104047;104048;104049;104050;104051;104052;104053;104054;104055;104056;104057;104058 63578;63579;63580;63581;63582;63583;63584;63585 63579 8 EVAHLRPR Unmodified 976.55665 0.55664724 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.449 11.265 2 0.0039638 2651 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.69 83.843 493210000 69855000 59684000 67938000 0 0 0 30318000 28149000 24557000 0 0 0 30790000 24325000 21820000 0 0 0 51499000 44247000 40023000 0 0 0 5600 444 5457 104059;104060;104061;104062;104063;104064;104065;104066;104067;104068;104069;104070 63586;63587;63588 63586 3 EVALELYVDR Unmodified 1205.6292 0.62920306 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.73 37.962 2 4.8934E-06 18715 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.35 136.56 392360000 32593000 30334000 28925000 0 0 0 52514000 40675000 39516000 631100 0 0 27675000 27935000 25717000 0 0 0 27400000 29171000 29271000 0 0 0 5601 94 5458 104071;104072;104073;104074;104075;104076;104077;104078;104079;104080;104081;104082;104083 63589;63590;63591;63592;63593;63594;63595;63596;63597;63598;63599;63600;63601;63602;63603;63604;63605;63606;63607;63608 63590 20 EVALGENGIIEGAK Unmodified 1398.7355 0.73545904 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.498 29.83 2 0.023417 13411 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 58.674 54.338 140580000 0 0 0 0 0 0 12803000 13819000 15773000 4375500 3922100 3599900 13728000 15897000 13483000 0 0 0 14930000 11887000 16358000 0 0 0 5602 671 5459 104084;104085;104086;104087;104088;104089;104090;104091;104092;104093;104094;104095 63609 63609 1 EVALGENGIIEGAKPGTVLIDMSSIAPLASR Unmodified 3107.6537 0.65365025 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.975 52.537 3 1.0321E-32 24727 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 186.17 176.77 326650000 30113000 32267000 33843000 0 0 0 26218000 30223000 32702000 0 0 0 32129000 23956000 34382000 0 0 0 0 20771000 30050000 0 0 0 5603 671 5460 104096;104097;104098;104099;104100;104101;104102;104103;104104;104105;104106 63610;63611;63612;63613 63613 4 EVANFVTK Unmodified 906.48108 0.48108226 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.391 19.006 2 0.0012043 6789 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 110.81 72.674 650910000 53641000 43842000 43866000 0 0 0 54635000 53193000 57708000 0 0 0 45600000 35349000 45350000 0 0 0 74647000 74907000 68168000 0 0 0 5604 473 5461 104107;104108;104109;104110;104111;104112;104113;104114;104115;104116;104117;104118 63614;63615;63616;63617;63618;63619;63620;63621;63622;63623;63624;63625 63623 12 EVAQAIGQLEQELGR Unmodified 1639.8529 0.85294842 873 P0AEM6 fliA RNA polymerase sigma factor FliA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 47.584 46.244 2;3 4.7789E-07 22765 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.56 108.81 104030000 34955000 33630000 35445000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5605 873 5462 104119;104120;104121;104122;104123;104124 63626;63627;63628;63629 63626 3 EVATNSELVQSGK Unmodified 1360.6834 0.68342347 6 CON__P02533;CON__Q04695;CON__Q9QWL7 yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 15.856 16.245 2 1.1403E-08 4557 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 157.78 138.42 66953000 0 0 0 1279100 1636200 1412100 0 0 0 17419000 13835000 12825000 0 0 0 0 0 0 0 0 0 6418300 5545600 6583400 + 5606 6 5463 104125;104126;104127;104128;104129;104130;104131;104132;104133 63630;63631;63632;63633;63634;63635 63631 6 EVAVDDGILGGLK Unmodified 1284.6925 0.6925316 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.152 39.476 2 6.4301E-06 19206 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.75 97.02 122320000 19847000 22271000 17979000 0 0 0 14145000 13365000 11258000 0 0 0 4843500 3456500 4080200 0 0 0 5615400 5457000 0 0 0 0 5607 1528 5464 104134;104135;104136;104137;104138;104139;104140;104141;104142;104143;104144 63636;63637;63638 63637 3 EVAVFPAGVADK Unmodified 1201.6343 0.63428844 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.179 30.727 2 5.5273E-05 13808 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 106.4 100.48 2661800000 210190000 211220000 200340000 1887100 2647000 2453700 256390000 242540000 240690000 4224200 5937800 2432300 190140000 161050000 168490000 0 1301400 0 252510000 245570000 261730000 0 0 0 5608 1409 5465 104145;104146;104147;104148;104149;104150;104151;104152;104153;104154;104155;104156;104157;104158;104159;104160;104161;104162;104163 63639;63640;63641;63642;63643;63644;63645;63646;63647;63648;63649;63650;63651;63652 63652 14 EVAWEQNYPDR Unmodified 1405.6262 0.62624295 1823 P76145 tam Trans-aconitate 2-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.278 25.181 2 2.7827E-07 11265 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.36 155.47 134040000 28208000 28058000 24265000 0 0 0 10329000 9283400 10632000 0 0 0 4193900 2489200 3643200 0 0 0 3969200 4732200 4233500 0 0 0 5609 1823 5466 104164;104165;104166;104167;104168;104169;104170;104171;104172;104173;104174;104175 63653;63654;63655 63654 3 EVAYLSYQLATIK Unmodified 1497.8079 0.80789571 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 2 2 2 2 1 2 1 2 2 2 2 2 43.063 41.849 2;3 1.0213E-05 14846 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 143.96 136.83 452870000 38794000 40541000 28349000 0 0 0 48084000 43345000 43426000 0 0 0 27484000 22063000 24905000 7045200 7282900 7170100 36963000 35753000 41661000 0 0 0 5610 37 5467 104176;104177;104178;104179;104180;104181;104182;104183;104184;104185;104186;104187;104188;104189;104190;104191;104192;104193;104194;104195;104196;104197;104198;104199;104200;104201 63656;63657;63658;63659;63660;63661;63662;63663 63658 8 EVCHVPLIASGGAGTMEHFLEAFR Unmodified 2627.2625 0.26246241 1627 P60664 hisF Imidazole glycerol phosphate synthase subunit HisF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.493 50.245 4 1.8472E-16 23539 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 156.74 148.75 398210000 47694000 56861000 38268000 0 0 0 21286000 26338000 20403000 0 0 0 35028000 28829000 31901000 0 0 0 31530000 25611000 34458000 0 0 0 5611 1627 5468 104202;104203;104204;104205;104206;104207;104208;104209;104210;104211;104212;104213 63664;63665;63666;63667;63668;63669;63670;63671 63670 8 EVCSGDTGHAEAVR Unmodified 1486.6471 0.64705474 309 P0A744 msrA Peptide methionine sulfoxide reductase MsrA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 11.141 11.773 2;3 1.6338E-19 2942 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 208.84 205.99 1788700000 245210000 226100000 200820000 14179000 14388000 15417000 141400000 131150000 145150000 55247000 48570000 38977000 77378000 86230000 69985000 0 3821700 0 82324000 71336000 70951000 14643000 17732000 17698000 5612 309 5469 104214;104215;104216;104217;104218;104219;104220;104221;104222;104223;104224;104225;104226;104227;104228;104229;104230;104231;104232;104233;104234;104235;104236;104237;104238;104239;104240;104241;104242;104243;104244;104245;104246;104247;104248;104249;104250;104251;104252 63672;63673;63674;63675;63676;63677;63678;63679;63680;63681;63682;63683;63684;63685;63686;63687;63688;63689;63690;63691;63692;63693;63694 63679 22 EVDAIMNR Unmodified 946.45422 0.45421558 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 1 2 2 18.366 18.803 2 1.6927E-06 5383 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 191.03 181.05 3909300000 130520000 123990000 110920000 1851000 1042800 1446100 95386000 86398000 95585000 575970000 613560000 649890000 130250000 112730000 117830000 33187000 34081000 30697000 143680000 149500000 147820000 180150000 164990000 177770000 5613 936 5470 104253;104254;104255;104256;104257;104258;104259;104260;104261;104262;104263;104264;104265;104266;104267;104268;104269;104270;104271;104272;104273;104274;104275;104276;104277;104278;104279;104280;104281;104282;104283;104284;104285;104286;104287;104288;104289;104290;104291;104292;104293 63695;63696;63697;63698;63699;63700;63701;63702;63703;63704;63705;63706;63707;63708;63709;63710;63711;63712 63707 17 EVDAIMNR Oxidation (M) 962.44913 0.4491302 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 1 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 2 1 14.424 14.631 2 0.0038222 5571 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 95.793 55.441 85891000 0 0 0 0 0 0 0 0 0 22650000 17185000 23604000 0 0 0 0 0 0 0 0 0 1754000 14899000 5799100 5614 936 5470 104294;104295;104296;104297;104298;104299;104300;104301 63713;63714;63715 63715 424 3 EVDFFSIGTNDLTQYTLAVDR Unmodified 2403.1594 0.15942035 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 55.26 53.796 2;3 4.4936E-43 26715 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 300.4 291.8 796450000 39203000 40528000 36830000 1693200 1666600 1950100 88560000 84874000 69399000 2894500 4072800 0 72335000 67633000 77186000 0 0 0 68690000 72965000 65975000 0 0 0 5615 192 5471 104302;104303;104304;104305;104306;104307;104308;104309;104310;104311;104312;104313;104314;104315;104316;104317;104318;104319;104320;104321;104322;104323;104324;104325;104326;104327;104328;104329;104330 63716;63717;63718;63719;63720;63721 63717 6 EVDIIVTTALIPGKPAPK Unmodified 1861.0925 0.092450407 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 41.613 39.88 2;3 3.6558E-29 19863 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 219.92 216.59 948020000 32526000 28766000 23378000 8262300 10206000 8548700 89383000 100900000 82156000 39052000 36514000 32439000 67787000 61386000 52648000 6036000 3607800 3207600 73292000 69179000 67325000 17142000 16209000 18078000 5616 146 5472 104331;104332;104333;104334;104335;104336;104337;104338;104339;104340;104341;104342;104343;104344;104345;104346;104347;104348;104349;104350;104351;104352;104353;104354;104355;104356;104357;104358;104359;104360;104361;104362;104363;104364;104365;104366;104367;104368;104369;104370;104371;104372;104373;104374;104375 63722;63723;63724;63725;63726;63727;63728;63729;63730;63731;63732;63733;63734;63735;63736 63728 13 EVDIYQGDTPFCHFAYIEK Unmodified 2331.0518 0.051784159 1166 P20605 fic Probable adenosine monophosphate-protein transferase fic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 2 1 2 1 1 1 1 1 1 1 1 45.013 43.514 2;3 7.7044E-07 21156 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 97.32 96.386 405540000 73600000 59361000 58276000 0 0 0 49791000 54233000 48702000 0 0 0 9447600 7403200 7737700 0 0 0 12667000 11878000 12442000 0 0 0 5617 1166 5473 104376;104377;104378;104379;104380;104381;104382;104383;104384;104385;104386;104387;104388;104389 63737;63738;63739;63740;63741;63742;63743;63744 63742 7 EVDSIIR Unmodified 830.44978 0.44978213 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.923 20.212 2 0.0016502 6332 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 126.24 69.733 1847100000 116440000 109720000 129180000 0 17816000 20465000 170510000 148440000 171340000 33372000 33615000 29818000 115350000 111210000 108270000 0 0 0 151690000 161320000 155880000 20218000 21588000 20887000 5618 245 5474 104390;104391;104392;104393;104394;104395;104396;104397;104398;104399;104400;104401;104402;104403;104404;104405;104406;104407;104408;104409 63745;63746;63747;63748;63749;63750;63751;63752;63753;63754;63755 63747 7 EVDSIIRDLTDAAVK Unmodified 1643.873 0.87301516 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 47.496 46.093 3 4.3447E-05 16465 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 85.457 81.837 46265000 0 0 0 6280000 6899300 6323700 0 0 0 3581800 3581700 3468100 0 0 0 2534300 0 3767400 0 0 0 4107400 3265100 2456600 5619 245 5475 104410;104411;104412;104413;104414;104415;104416;104417;104418;104419;104420 63756;63757;63758;63759;63760;63761;63762;63763;63764 63762 9 EVDSLAQR Unmodified 916.46141 0.46140945 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.081 13.816 2 9.3068E-05 4217 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 162.51 141.96 12261000000 123860000 112910000 108040000 0 0 0 1177000000 1107400000 969240000 0 0 752160 1150000000 1126000000 918920000 1254100 0 0 1815400000 1818500000 1831900000 0 0 0 5620 993 5476 104421;104422;104423;104424;104425;104426;104427;104428;104429;104430;104431;104432;104433;104434 63765;63766;63767;63768;63769;63770;63771;63772;63773;63774;63775;63776 63771 12 EVDVTQLK Unmodified 930.50221 0.50221163 171 P07862 ddlB D-alanine--D-alanine ligase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.578 20.984 2 0.0028521 8135 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.033 45.577 449550000 39428000 44566000 34533000 0 0 0 27608000 37814000 42211000 0 0 0 34941000 33563000 29596000 0 0 0 38158000 43783000 43354000 0 0 0 5621 171 5477 104435;104436;104437;104438;104439;104440;104441;104442;104443;104444;104445;104446 63777;63778;63779;63780;63781;63782;63783 63781 7 EVDWTQLDHVIDAVVAK Unmodified 1936.9894 0.9894419 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.567 53.205 3 1.0398E-06 19484 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 99.044 90.92 297860000 70132000 61924000 72093000 32251000 26730000 34734000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5622 1427 5478 104447;104448;104449;104450;104451;104452 63784;63785;63786;63787;63788 63784 5 EVEAAFEQLGVPVR Unmodified 1542.8042 0.80420731 1911 P77522 sufB FeS cluster assembly protein SufB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.295 41.78 2 2.4605E-14 20740 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 226.29 219.43 182880000 17974000 17734000 18188000 0 0 0 21663000 21521000 20499000 0 0 0 9624500 8038900 8795100 0 0 0 14793000 12372000 11681000 0 0 0 5623 1911 5479 104453;104454;104455;104456;104457;104458;104459;104460;104461;104462;104463;104464 63789;63790;63791;63792;63793;63794;63795;63796;63797 63789 5 EVEGFGEVFR Unmodified 1167.556 0.55603812 900 P0AEZ9 moaB Molybdenum cofactor biosynthesis protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.81 36.532 2 1.8844E-05 17493 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.05 141.52 163360000 25417000 21480000 20271000 354770 0 0 25257000 20735000 21612000 0 0 0 0 5782800 5604600 4297600 2907600 2793700 0 0 6844700 0 0 0 5624 900 5480 104465;104466;104467;104468;104469;104470;104471;104472;104473;104474;104475;104476;104477;104478 63798;63799;63800;63801;63802;63803;63804 63804 7 EVENRPAVSLK Unmodified 1240.6776 0.67755023 911 P0AF50 yjbR Uncharacterized protein YjbR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 1 1 2 2 2 13.72 14.451 2;3 5.9053E-10 4568 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.29 161.26 1754600000 299150000 268260000 278370000 3822600 2102600 2787800 207720000 196770000 203660000 1551400 1977400 1711400 45057000 45900000 41224000 0 1307100 2186800 47598000 52757000 50720000 0 0 0 5625 911 5481 104479;104480;104481;104482;104483;104484;104485;104486;104487;104488;104489;104490;104491;104492;104493;104494;104495;104496;104497;104498;104499;104500;104501;104502;104503;104504;104505;104506;104507;104508;104509;104510;104511 63805;63806;63807;63808;63809;63810;63811 63809 7 EVEQALESAVNNAPIWFATPPAER Unmodified 2638.3027 0.30273055 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 54.648 53.206 3 3.2385E-15 21282 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 142.79 139.06 205620000 0 0 0 0 0 0 0 0 0 53243000 41838000 0 3048900 0 0 0 0 0 5642700 0 0 33671000 36617000 31559000 5626 215 5482 104512;104513;104514;104515;104516;104517;104518 63812;63813 63812 2 EVEVIYR Unmodified 906.48108 0.48108226 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.122 21.474 2 0.0010521 8577 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.83 78.19 291410000 41258000 42965000 30484000 1232500 1109700 1002500 20171000 22327000 0 0 0 0 20131000 19073000 17960000 0 0 0 21374000 26860000 25457000 0 0 0 5627 1632 5483 104519;104520;104521;104522;104523;104524;104525;104526;104527;104528;104529;104530;104531;104532 63814;63815 63814 2 EVEWQEK Unmodified 946.43961 0.43961137 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.737 16.285 2 0.0043665 4087 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 104.11 99.429 589430000 43727000 41954000 36237000 15872000 15441000 16958000 50208000 49915000 43140000 18999000 17199000 21045000 23014000 21624000 23867000 4883000 4092700 4465100 36579000 31516000 30741000 13352000 11958000 12646000 5628 956 5484 104533;104534;104535;104536;104537;104538;104539;104540;104541;104542;104543;104544;104545;104546;104547;104548;104549;104550;104551;104552;104553;104554;104555;104556 63816;63817;63818;63819;63820;63821;63822;63823;63824;63825;63826;63827;63828 63824 12 EVEWQEKAELALLK Unmodified 1684.9036 0.903587 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.55 38.423 3 0.00015927 13529 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 78.763 74.592 12214000 0 0 0 2996000 2707300 2580600 0 0 0 1553900 1208000 0 0 0 0 0 0 0 0 0 0 1168400 0 0 5629 956 5485 104557;104558;104559;104560;104561;104562 63829;63830;63831 63830 3 EVFGDKSPAISATK Unmodified 1448.7511 0.75110911 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 18.892 19.371 2;3 1.4475E-07 7365 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.09 132.85 91102000 12310000 10365000 7285500 3687500 4172600 4127900 5460800 4914900 4606200 0 1846600 983200 2837500 3094400 4132300 0 0 0 6320500 7752300 5845000 0 0 1360200 5630 489 5486 104563;104564;104565;104566;104567;104568;104569;104570;104571;104572;104573;104574;104575;104576;104577;104578;104579;104580;104581;104582;104583 63832;63833;63834;63835;63836;63837;63838;63839;63840;63841;63842 63839 11 EVFGPVLHVVR Unmodified 1250.7135 0.71354181 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 32.529 31.035 2;3 1.9603E-05 11691 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 136.8 128.26 1564300000 73543000 71931000 64641000 27511000 24958000 23547000 72390000 56951000 57391000 46911000 45833000 45321000 63901000 58226000 56744000 7925200 7016500 6434100 174410000 180360000 170040000 81019000 73299000 73965000 5631 215 5487 104584;104585;104586;104587;104588;104589;104590;104591;104592;104593;104594;104595;104596;104597;104598;104599;104600;104601;104602;104603;104604;104605;104606;104607;104608;104609;104610;104611;104612;104613;104614;104615;104616;104617;104618;104619;104620;104621;104622;104623;104624;104625;104626;104627;104628 63843;63844;63845;63846;63847;63848;63849;63850;63851;63852;63853;63854;63855;63856;63857;63858;63859;63860;63861;63862;63863;63864;63865;63866;63867;63868;63869;63870;63871;63872;63873;63874;63875;63876;63877;63878;63879;63880 63859 37 EVFLDSK Unmodified 836.42798 0.42798405 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 3 20.379 20.514 1;2 0.0011749 6511 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 134.66 120.25 8919600000 34364000 32580000 25678000 0 0 0 37665000 42643000 39883000 1028100000 922630000 891000000 38116000 35037000 32061000 1338000000 1099000000 1167000000 52124000 38655000 45344000 697250000 652320000 670130000 5632 1616 5488 104629;104630;104631;104632;104633;104634;104635;104636;104637;104638;104639;104640;104641;104642;104643;104644;104645;104646;104647;104648;104649;104650;104651;104652;104653;104654;104655;104656;104657;104658;104659;104660;104661;104662;104663;104664;104665;104666;104667;104668 63881;63882;63883;63884;63885;63886;63887;63888;63889;63890;63891;63892;63893;63894;63895;63896;63897;63898;63899;63900;63901;63902;63903;63904 63894 24 EVFQDLNHHGVYHSGEVVGLGNLVCEK Unmodified 3035.456 0.4559535 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 3 3 3 2 3 2 3 3 3 2 2 2 3 2 3 2 2 2 1 1 35.687 33.967 3;4;5 2.5564E-80 16340 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 281.28 279.05 1750800000 283590000 309120000 262270000 41521000 36478000 34572000 155540000 154330000 194210000 20807000 18234000 13538000 40715000 35857000 29628000 0 0 0 35419000 35156000 42089000 0 3670400 4082500 5633 613 5489 104669;104670;104671;104672;104673;104674;104675;104676;104677;104678;104679;104680;104681;104682;104683;104684;104685;104686;104687;104688;104689;104690;104691;104692;104693;104694;104695;104696;104697;104698;104699;104700;104701;104702;104703;104704;104705;104706;104707;104708;104709;104710;104711;104712;104713;104714;104715 63905;63906;63907;63908;63909;63910;63911;63912;63913;63914;63915;63916;63917;63918;63919;63920;63921;63922;63923;63924;63925 63920 21 EVFQMALR Unmodified 992.51134 0.51133653 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.512 32.049 2 0.00036411 14574 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 143.37 116.41 682140000 65481000 61492000 50720000 596810 0 519230 38030000 37381000 36382000 0 0 0 75059000 67427000 63190000 0 0 0 58834000 60795000 66226000 0 0 0 5634 951 5490 104716;104717;104718;104719;104720;104721;104722;104723;104724;104725;104726;104727;104728;104729 63926;63927;63928;63929;63930;63931;63932;63933 63932 7 EVGDLAVVNTPAGEASWYVNAIEYVKP Unmodified 2890.4389 0.43888968 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.249 54.245 3 2.6063E-07 20623 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 93.446 90.907 99405000 0 0 0 0 0 0 0 0 6557200 9979700 9130400 7339600 0 0 0 17992000 17556000 27867000 0 96481 0 2887100 0 0 5635 1338 5491 104730;104731;104732;104733;104734;104735;104736;104737;104738 63934;63935 63934 2 EVGERPAVK Unmodified 983.53999 0.53999412 1957 Q46845 yghU Disulfide-bond oxidoreductase YghU yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.628 11.443 2 7.8603E-05 2753 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.17 121.26 517450000 105940000 86267000 80308000 0 0 0 40351000 48854000 40131000 0 0 0 14885000 18420000 12243000 0 0 0 27336000 22558000 20156000 0 0 0 5636 1957 5492 104739;104740;104741;104742;104743;104744;104745;104746;104747;104748;104749;104750 63936;63937;63938;63939;63940;63941;63942 63939 7 EVGFMAGMMK Unmodified 1099.4864 0.48644369 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.462 35.623 2 0.021378 17035 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 60.478 54.374 372530000 105090000 103890000 85968000 0 0 429030 10477000 10609000 8922200 793020 695290 0 6745600 5561100 0 0 0 0 11505000 11136000 10705000 0 0 0 5637 26 5493 104751;104752;104753;104754;104755;104756;104757;104758;104759;104760;104761;104762;104763;104764 63943;63944;63945 63945 3 EVGSHFHALDR Unmodified 1266.6105 0.6105333 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 1 1 13.023 13.858 2;3 1.8439E-07 4214 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 185.6 146.35 514490000 51345000 55775000 51035000 0 0 0 44935000 57717000 53168000 0 0 0 43085000 33536000 34756000 0 0 0 55147000 0 33993000 0 0 0 5638 473 5494 104765;104766;104767;104768;104769;104770;104771;104772;104773;104774;104775;104776;104777;104778 63946;63947;63948;63949;63950;63951;63952;63953;63954 63951 9 EVHIEGYTPEDK Unmodified 1415.6569 0.65687437 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 19.041 19.606 2;3 9.3787E-17 7516 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 251.64 239.6 777920000 94821000 86121000 78260000 0 0 0 56305000 65962000 47793000 0 0 0 46894000 47337000 44148000 0 0 0 71748000 76998000 61534000 0 0 0 5639 451 5495 104779;104780;104781;104782;104783;104784;104785;104786;104787;104788;104789;104790;104791;104792;104793;104794;104795;104796;104797;104798;104799;104800;104801;104802 63955;63956;63957;63958;63959;63960;63961;63962;63963;63964;63965;63966;63967;63968;63969;63970;63971;63972;63973;63974;63975 63962 21 EVHIEGYTPEDKK Unmodified 1543.7518 0.75183739 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 14.39 15.056 2;3;4 5.6075E-24 4863 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 282.95 274.72 1599700000 221350000 246170000 225690000 4378200 2139000 1676300 111840000 128530000 89794000 9248200 6533900 2066300 76670000 73767000 79073000 1723200 0 0 110130000 105910000 100080000 1807900 0 1080400 5640 451 5496 104803;104804;104805;104806;104807;104808;104809;104810;104811;104812;104813;104814;104815;104816;104817;104818;104819;104820;104821;104822;104823;104824;104825;104826;104827;104828;104829;104830;104831;104832;104833;104834;104835;104836;104837;104838;104839;104840;104841;104842 63976;63977;63978;63979;63980;63981;63982;63983;63984;63985;63986;63987;63988;63989;63990;63991;63992;63993;63994;63995;63996;63997;63998;63999;64000;64001;64002;64003 63992 28 EVIAFLAER Unmodified 1046.576 0.57604528 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 1 1 2 2 1 1 1 1 1 2 2 2 1 1 1 39.15 37.486 2 1.149E-05 18138 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.72 140.09 738920000 50199000 42057000 45391000 2384300 2811800 2384800 43853000 46594000 41712000 26395000 26209000 23592000 51554000 38729000 40447000 22468000 12627000 15712000 62302000 55171000 56002000 11092000 9169000 10059000 5641 1576 5497 104843;104844;104845;104846;104847;104848;104849;104850;104851;104852;104853;104854;104855;104856;104857;104858;104859;104860;104861;104862;104863;104864;104865;104866;104867;104868;104869;104870;104871;104872;104873 64004;64005;64006;64007;64008;64009;64010;64011;64012;64013;64014;64015;64016;64017;64018;64019 64018 16 EVIDGYGK Unmodified 879.4338 0.43379771 811 P0ADV1 lptA Lipopolysaccharide export system protein LptA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.202 17.028 2 0.0062058 5950 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 85.359 38.593 233840000 28301000 23492000 18701000 0 0 0 30712000 28276000 0 0 0 0 15812000 15540000 13889000 0 0 0 23753000 15928000 19440000 0 0 0 5642 811 5498 104874;104875;104876;104877;104878;104879;104880;104881;104882;104883;104884;104885 64020;64021;64022;64023;64024 64024 5 EVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAK Unmodified 3937.8404 0.84035818 811 P0ADV1 lptA Lipopolysaccharide export system protein LptA yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.381 28.106 5 0.00053341 12927 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 60.876 59.537 162960000 13125000 15795000 20033000 0 0 0 8053900 15253000 15391000 0 0 0 0 11474000 9719100 0 0 0 22666000 17154000 14292000 0 0 0 5643 811 5499 104886;104887;104888;104889;104890;104891;104892;104893;104894;104895;104896 64025;64026;64027 64027 3 EVIEFYSK Unmodified 1013.507 0.50696266 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.48 27.221 2 0.0015297 11875 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 108.09 82.261 2906000000 309670000 243760000 238140000 0 0 0 0 0 0 2134400 1314800 1623100 268540000 304250000 310840000 819680 0 0 429620000 393150000 402160000 0 0 0 5644 396 5500 104897;104898;104899;104900;104901;104902;104903;104904;104905;104906;104907;104908;104909;104910;104911 64028;64029;64030;64031;64032;64033;64034;64035;64036;64037;64038 64038 11 EVIGGDDAR Unmodified 930.44067 0.44067401 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 12.509 13.079 2 0.0010929 3004 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 93.374 63.189 692800000 43796000 38510000 40483000 1139700 765940 0 58312000 52469000 60902000 3728800 3727000 3651100 57192000 65456000 46812000 7782200 6902600 5036500 55005000 61395000 57822000 6317200 7512300 8081700 5645 124 5501 104912;104913;104914;104915;104916;104917;104918;104919;104920;104921;104922;104923;104924;104925;104926;104927;104928;104929;104930;104931;104932;104933;104934;104935;104936 64039;64040;64041;64042;64043;64044;64045;64046;64047 64044 7 EVIIPNK Unmodified 811.48035 0.48035398 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.065 17.603 2 0.021997 5050 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 75.131 46.265 83238000 0 0 0 10934000 6452000 4661800 4815500 4421400 5488600 4349700 4979400 5043200 2050600 1100400 1027500 0 0 0 4448100 1577900 2023900 6354000 6273800 7236600 5646 1899 5502 104937;104938;104939;104940;104941;104942;104943;104944;104945;104946;104947;104948;104949;104950;104951;104952;104953;104954 64048;64049;64050 64048 3 EVIPFGASLR Unmodified 1087.6026 0.60259438 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.651 36.792 2 0.00017953 18143 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 123.16 89.359 2358800000 182520000 194470000 180610000 5954100 5904000 5482700 114620000 102980000 98734000 5532000 5081300 5902100 133690000 150770000 147320000 0 0 0 334810000 311710000 321200000 17619000 15501000 18439000 5647 937 5503 104955;104956;104957;104958;104959;104960;104961;104962;104963;104964;104965;104966;104967;104968;104969;104970;104971;104972;104973;104974;104975 64051;64052;64053;64054;64055;64056;64057;64058;64059;64060;64061;64062;64063;64064;64065 64053 15 EVIPPYYSVK Unmodified 1193.6332 0.6332258 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 31.391 30.138 2 0.001 13935 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.308 54.467 572840000 139190000 124350000 116160000 0 0 0 0 0 0 0 0 0 14784000 12024000 15715000 0 0 0 51379000 47609000 48069000 0 0 3564200 5648 65 5504 104976;104977;104978;104979;104980;104981;104982;104983;104984;104985 64066;64067;64068;64069;64070;64071;64072;64073;64074;64075;64076;64077;64078 64074 13 EVIYVDSPSK Unmodified 1135.5761 0.57610486 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.034 21.178 2 9.0124E-06 6439 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 154.49 144.58 845210000 79595000 70344000 58248000 0 1845200 0 50205000 50474000 56392000 0 3791000 5857800 47738000 47303000 47963000 21427000 14554000 15800000 68781000 74726000 70081000 19238000 20625000 20221000 5649 1633 5505 104986;104987;104988;104989;104990;104991;104992;104993;104994;104995;104996;104997;104998;104999;105000;105001;105002;105003;105004;105005;105006 64079;64080;64081;64082;64083;64084;64085;64086;64087;64088;64089;64090;64091;64092;64093;64094;64095;64096;64097;64098;64099 64079 20 EVIYVDSPSKLPAVNNIYELR Unmodified 2418.2795 0.27947591 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 44.637 43.288 3 1.1233E-21 16232 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 163.45 161.3 138220000 0 0 0 1623500 1128900 1085500 0 0 0 5210500 0 4313000 0 0 0 27882000 19436000 22761000 0 0 0 21696000 17219000 15861000 5650 1633 5506 105007;105008;105009;105010;105011;105012;105013;105014;105015;105016;105017 64100;64101;64102;64103;64104;64105;64106 64100 7 EVLAIER Unmodified 828.47052 0.47051757 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.059 21.387 2 0.0018451 8203 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 122.79 34.056 517190000 52393000 49351000 44420000 659560 0 973800 36835000 36464000 41405000 0 0 0 44735000 35406000 34631000 0 0 0 45490000 47532000 46898000 0 0 0 5651 1565 5507 105018;105019;105020;105021;105022;105023;105024;105025;105026;105027;105028;105029;105030;105031 64107;64108;64109;64110;64111;64112;64113;64114;64115;64116;64117 64115 11 EVLEALANER Unmodified 1142.5932 0.5931519 233 P0A6D7 aroK Shikimate kinase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.903 27.451 2 3.3491E-13 12876 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 181.55 138.47 1235400000 150790000 142670000 122860000 0 0 0 114110000 103020000 0 1522000 1403000 1142400 107350000 102790000 113520000 0 0 0 132390000 0 141810000 0 0 0 5652 233 5508 105032;105033;105034;105035;105036;105037;105038;105039;105040;105041;105042;105043;105044;105045;105046 64118;64119;64120;64121;64122;64123;64124;64125;64126;64127;64128;64129;64130;64131 64122 12 EVLESGWITTGPK Unmodified 1415.7296 0.72964538 1927 P77690 arnB UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 37.538 35.416 2 1.292E-05 13986 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 114.83 96.522 12789000 0 0 0 1921800 1387200 1488800 0 0 0 3824300 4166900 0 0 0 0 0 0 0 0 0 0 0 0 0 5653 1927 5509 105047;105048;105049;105050;105051 64132;64133 64133 2 EVLPEGIR Unmodified 911.50763 0.50763136 1843 P76251 dmlA D-malate dehydrogenase [decarboxylating] yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.023 23.094 2 0.13145 9974 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 51.787 42.44 57939000 9232000 8118000 6605000 0 0 0 8347700 8666100 9521300 0 0 0 2148200 0 2359100 0 0 0 2941000 0 0 0 0 0 5654 1843 5510 105052;105053;105054;105055;105056;105057;105058;105059;105060 64134;64135 64135 0 EVLPPQHNCLHQLWSALSTTEK Unmodified 2587.2853 0.28530634 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.933 38.235 4 0.063595 19137 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 34.254 30.272 166240000 15940000 0 14785000 0 0 0 14766000 11530000 15108000 0 0 0 10748000 14341000 8463500 0 0 0 22642000 20751000 17163000 0 0 0 5655 744 5511 105061;105062;105063;105064;105065;105066;105067;105068;105069;105070;105071 64136;64137 64136 2 EVLPPQHNCLHQLWSALSTTEKDQLEQITR Unmodified 3570.7889 0.78891496 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 2 1 2 2 2 2 2 1 46.916 45.407 4;5 1.6213E-08 22008 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.45 105.66 600240000 49793000 46900000 45034000 0 2852800 0 45741000 50815000 49580000 2651200 5507600 10437000 20387000 27054000 32977000 0 0 0 74171000 64201000 66959000 5178200 0 0 5656 744 5512 105072;105073;105074;105075;105076;105077;105078;105079;105080;105081;105082;105083;105084;105085;105086;105087;105088;105089;105090;105091;105092;105093;105094;105095;105096;105097;105098;105099;105100 64138;64139;64140;64141;64142;64143;64144;64145;64146;64147;64148;64149;64150;64151;64152;64153;64154;64155;64156 64147 19 EVLQQFDDQSR Unmodified 1363.6368 0.63680763 923 P0AFA7 nhaB Na(+)/H(+) antiporter NhaB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.591 23.722 2 1.6652E-05 10044 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 139.98 129.46 76494000 6309500 0 4604600 0 1250100 1349100 0 0 0 0 3676400 0 9212500 0 5903600 946220 829700 0 9971600 11760000 14322000 2164900 1991900 2202100 5657 923 5513 105101;105102;105103;105104;105105;105106;105107;105108;105109;105110;105111;105112;105113;105114;105115 64157;64158;64159;64160;64161 64161 5 EVLRPVADELR Unmodified 1295.7197 0.7197494 1263 P25552 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 23.382 22.661 2;3 2.0326E-05 9904 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 145.25 99.119 221940000 26644000 25909000 22342000 0 0 0 9578300 10216000 9514100 0 0 0 17476000 12563000 13597000 0 0 0 21928000 27618000 24555000 0 0 0 5658 1263 5514 105116;105117;105118;105119;105120;105121;105122;105123;105124;105125;105126;105127;105128;105129;105130;105131;105132;105133;105134;105135;105136;105137;105138;105139 64162;64163;64164;64165;64166;64167;64168 64162 6 EVMDIDEAR Unmodified 1076.4808 0.48082426 1060 P10443 dnaE DNA polymerase III subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.984 22.031 2 0.14187 8934 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 49.423 45.286 55611000 5858300 3664600 4519400 0 0 0 4437800 3859400 3750400 0 0 0 4063000 2302500 3437900 0 0 0 5823800 7127000 6766700 0 0 0 5659 1060 5515 105140;105141;105142;105143;105144;105145;105146;105147;105148;105149;105150;105151 64169;64170;64171 64169 0 EVMEALVR Unmodified 945.49535 0.49535211 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.463 25.432 2 0.00074681 10919 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 124.89 104.61 3224800000 191750000 166620000 135320000 965470 850780 1104500 294130000 276970000 284790000 1216300 0 0 318170000 297500000 258760000 0 748570 998090 333840000 318770000 342340000 0 0 0 5660 1189 5516 105152;105153;105154;105155;105156;105157;105158;105159;105160;105161;105162;105163;105164;105165;105166;105167;105168;105169 64172;64173;64174;64175;64176;64177;64178;64179;64180;64181;64182 64182 11 EVMESFIK Unmodified 981.48412 0.48411873 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 30.227 28.916 2 0.018502 13316 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 66.429 18.514 296130000 92030000 93601000 82565000 0 0 0 0 3995000 5105100 0 0 0 2854400 3057900 2903100 0 0 0 5346800 4669500 0 0 0 0 5661 1525 5517 105170;105171;105172;105173;105174;105175;105176;105177;105178;105179 64183;64184;64185 64185 3 EVMEYHNFQLVNYYK Unmodified 1975.9138 0.91383411 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 37.692 36.085 2;3 3.2505E-111 17792 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 397.87 392.37 5229200000 499530000 476960000 429850000 0 0 0 338150000 380550000 378600000 0 0 0 480170000 371870000 398100000 557130 0 0 481740000 491530000 501580000 0 0 0 5662 333 5518 105180;105181;105182;105183;105184;105185;105186;105187;105188;105189;105190;105191;105192;105193;105194;105195;105196;105197;105198;105199;105200;105201;105202;105203;105204 64186;64187;64188;64189;64190;64191;64192;64193;64194;64195;64196;64197;64198;64199;64200;64201;64202;64203;64204;64205;64206;64207;64208;64209 64188 22 EVMTTLWPFLEQNPK Unmodified 1831.9179 0.91785686 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 2 54.525 53.131 2;3 6.0802E-07 25999 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.33 125.16 474140000 98433000 99456000 276250000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5663 26 5519 105205;105206;105207;105208 64210;64211;64212;64213 64212 4 EVNDHKPFWVIDQVK Unmodified 1852.9472 0.94718315 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 2 2 2 2 2 2 32.488 31.179 3;4 0.00013756 14771 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 59.884 49.963 412620000 8892300 18617000 4510200 0 0 0 14100000 19797000 36292000 0 0 0 42953000 44860000 40610000 0 0 0 63006000 61369000 57611000 0 0 0 5664 1307 5520 105209;105210;105211;105212;105213;105214;105215;105216;105217;105218;105219;105220;105221;105222;105223;105224;105225;105226;105227;105228 64214;64215;64216;64217;64218;64219;64220;64221;64222;64223;64224;64225;64226;64227 64217 14 EVNGLPLAYLDSAASAQKPSQVIDAEAEFYR Unmodified 3351.6623 0.66230069 1906 P77444 sufS Cysteine desulfurase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 52.474 51.219 3 0.0076492 18597 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 43.068 41.162 76485000 9869600 13965000 9950900 2710800 4564400 5093100 6673500 0 3717700 0 0 0 4683000 0 2958400 0 0 0 0 4120800 5123900 3053400 0 0 5665 1906 5521 105229;105230;105231;105232;105233;105234;105235;105236;105237;105238;105239;105240;105241 64228;64229 64228 2 EVNLLGQNVNAWR Unmodified 1511.7845 0.78447492 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.38 39.767 2 1.4611E-17 15564 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 214.93 207.8 938720000 83909000 79910000 68321000 6063100 7702800 7695200 49069000 49176000 44234000 14343000 11416000 11464000 59609000 51188000 46199000 9173200 6080100 6073600 98607000 100680000 97938000 8957400 10743000 10175000 5666 862 5522 105242;105243;105244;105245;105246;105247;105248;105249;105250;105251;105252;105253;105254;105255;105256;105257;105258;105259;105260;105261;105262;105263;105264;105265 64230;64231;64232;64233;64234;64235;64236;64237;64238;64239;64240;64241;64242;64243;64244;64245;64246;64247 64235 18 EVNTGTNLPAQIDLYAVDGDEYK Unmodified 2524.1969 0.19692807 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 48.634 47.372 2 3.8835E-35 22996 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 269.51 262.78 413970000 65516000 70803000 55011000 0 0 0 0 0 3423500 0 0 0 34858000 29573000 36987000 0 0 0 47549000 34950000 35302000 0 0 0 5667 696;1097 5523 105266;105267;105268;105269;105270;105271;105272;105273;105274;105275 64248;64249;64250;64251 64250 4 EVNVPDIGGDEVEVTEVMVK Unmodified 2157.0511 0.051115457 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 4 6 8 8 5 4 3 3 3 4 4 2 4 2 3 3 3 4 5 6 6 7 50.662 49.391 2;3;4 3.5947E-15 23362 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 153.25 144.43 19033000000 478980000 392850000 387970000 2409400000 2427500000 2223700000 473190000 454920000 388740000 241170000 210790000 237860000 348270000 291190000 301490000 58936000 47111000 43889000 479750000 539150000 478260000 2186500000 1998900000 1932700000 5668 133 5524 105276;105277;105278;105279;105280;105281;105282;105283;105284;105285;105286;105287;105288;105289;105290;105291;105292;105293;105294;105295;105296;105297;105298;105299;105300;105301;105302;105303;105304;105305;105306;105307;105308;105309;105310;105311;105312;105313;105314;105315;105316;105317;105318;105319;105320;105321;105322;105323;105324;105325;105326;105327;105328;105329;105330;105331;105332;105333;105334;105335;105336;105337;105338;105339;105340;105341;105342;105343;105344;105345;105346;105347;105348;105349;105350;105351;105352;105353;105354;105355;105356;105357;105358;105359;105360;105361;105362;105363;105364;105365;105366;105367;105368;105369;105370;105371;105372;105373;105374;105375;105376;105377;105378 64252;64253;64254;64255;64256;64257;64258;64259;64260;64261;64262;64263;64264;64265;64266;64267;64268;64269;64270;64271;64272;64273;64274;64275;64276;64277;64278;64279;64280;64281;64282;64283;64284;64285;64286;64287;64288;64289;64290;64291;64292;64293;64294;64295;64296;64297;64298;64299;64300;64301;64302;64303;64304;64305;64306;64307;64308;64309;64310;64311;64312;64313;64314;64315;64316;64317;64318;64319;64320;64321;64322;64323;64324;64325;64326;64327;64328;64329;64330;64331;64332;64333;64334;64335;64336;64337;64338;64339;64340;64341;64342;64343;64344;64345;64346;64347;64348;64349;64350;64351;64352;64353;64354;64355;64356;64357;64358;64359;64360 64305 107 EVNVPDIGGDEVEVTEVMVK Oxidation (M) 2173.046 0.046030079 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 6 7 7 1 1 1 2 1 1 2 2 1 8 8 6 44.543 42.759 2;3 1.4843E-10 16292 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 132.08 127.61 486760000 0 0 2590200 79510000 80253000 76258000 3330000 2189300 2745800 4609300 1318100 2360400 2356900 0 0 0 0 0 0 4843000 3367600 80210000 76056000 64761000 5669 133 5524 105379;105380;105381;105382;105383;105384;105385;105386;105387;105388;105389;105390;105391;105392;105393;105394;105395;105396;105397;105398;105399;105400;105401;105402;105403;105404;105405;105406;105407;105408;105409;105410;105411;105412;105413;105414;105415;105416;105417;105418;105419;105420;105421;105422;105423;105424;105425;105426;105427;105428;105429;105430;105431;105432;105433 64361;64362;64363;64364;64365;64366;64367;64368;64369;64370;64371;64372;64373;64374;64375;64376;64377;64378;64379;64380;64381;64382;64383;64384;64385;64386;64387;64388;64389;64390;64391;64392;64393;64394;64395 64367 42 35 EVPAAIQK Unmodified 854.48617 0.48616764 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 13.588 14.198 2 0.0018669 3592 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 105.27 83.566 5594300000 762180000 772940000 632150000 18469000 17736000 16657000 276530000 266030000 240410000 94085000 79360000 81978000 272120000 291750000 259430000 69002000 50564000 54356000 376470000 410130000 410780000 50693000 47725000 42740000 5670 376 5525 105434;105435;105436;105437;105438;105439;105440;105441;105442;105443;105444;105445;105446;105447;105448;105449;105450;105451;105452;105453;105454;105455;105456;105457;105458 64396;64397;64398;64399;64400;64401;64402;64403;64404;64405;64406 64397 11 EVPADAYYGVHTLR Unmodified 1589.7838 0.78380622 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 26.764 25.61 2;3 1.6657E-19 11859 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 221.59 209.53 3571500000 236700000 221110000 206340000 0 0 0 449280000 435050000 439390000 0 0 0 301110000 279370000 310540000 0 0 0 231550000 236540000 221490000 0 0 3076900 5671 697 5526 105459;105460;105461;105462;105463;105464;105465;105466;105467;105468;105469;105470;105471;105472;105473;105474;105475;105476;105477;105478;105479;105480;105481;105482;105483 64407;64408;64409;64410;64411;64412;64413;64414;64415;64416;64417;64418;64419;64420;64421;64422;64423;64424;64425;64426;64427;64428;64429;64430 64410 24 EVPILLR Unmodified 838.52764 0.52763852 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 2 2 2 1 2 2 2 2 2 40.803 39.368 2 0.0096235 15408 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.627 65.337 157890000 29928000 29130000 28567000 0 0 0 9683000 12017000 11496000 0 0 0 4776700 5952700 5809900 0 0 0 6998800 6974700 6561000 0 0 0 5672 1814 5527 105484;105485;105486;105487;105488;105489;105490;105491;105492;105493;105494;105495;105496;105497;105498;105499;105500;105501;105502;105503;105504 64431;64432;64433;64434;64435 64434 5 EVPIVGR Unmodified 768.44939 0.4493882 227 P0A6B4 alr Alanine racemase, biosynthetic yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 19.487 19.932 2 0.12492 7276 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 59.609 18.923 110270000 9635800 12430000 7457100 0 0 0 6569800 9881800 9005000 0 0 0 7868000 7024300 6898300 245890 0 0 10728000 11971000 10560000 0 0 0 5673 227 5528 105505;105506;105507;105508;105509;105510;105511;105512;105513;105514;105515;105516;105517 64436 64436 0 EVPPLNVD Unmodified 881.44945 0.44944778 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 34.812 34.901 2 0.10698 12491 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 47.743 45.601 6652900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3013400 1730200 1909300 0 0 0 0 0 0 5674 395 5529 105518;105519;105520 64437 64437 1 EVPVEVKPEVR Unmodified 1279.7136 0.71360139 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 5 5 4 2 2 2 3 3 4 2 2 2 3 3 3 2 2 2 18.713 19.099 1;2;3 5.6103E-44 7359 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 300.71 273.58 64946000000 2538700000 2513400000 2406000000 36361000 36148000 34034000 10138000000 9698100000 9601300000 292860000 272030000 254870000 5803600000 5444400000 4892100000 83966000 71494000 70120000 3592400000 3631900000 3427700000 36391000 38011000 32464000 5675 1717 5530 105521;105522;105523;105524;105525;105526;105527;105528;105529;105530;105531;105532;105533;105534;105535;105536;105537;105538;105539;105540;105541;105542;105543;105544;105545;105546;105547;105548;105549;105550;105551;105552;105553;105554;105555;105556;105557;105558;105559;105560;105561;105562;105563;105564;105565;105566;105567;105568;105569;105570;105571;105572;105573;105574;105575;105576;105577;105578;105579;105580;105581;105582;105583;105584;105585;105586 64438;64439;64440;64441;64442;64443;64444;64445;64446;64447;64448;64449;64450;64451;64452;64453;64454;64455;64456;64457;64458;64459;64460;64461;64462;64463;64464;64465;64466;64467;64468;64469;64470;64471;64472;64473;64474;64475;64476;64477;64478;64479;64480;64481;64482;64483;64484;64485;64486;64487;64488;64489;64490;64491;64492;64493;64494;64495;64496;64497;64498;64499;64500;64501;64502;64503;64504;64505;64506;64507;64508 64453 70 EVQEISPNLR Unmodified 1183.6197 0.619701 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 2 2 2 22.173 21.992 2;3 2.8594E-09 8911 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 197.3 146.69 2207600000 312340000 283980000 241510000 4795100 4547500 4441900 210800000 213450000 222810000 10581000 8312400 10362000 121260000 119480000 123490000 1936700 1293300 0 82888000 90918000 88296000 19237000 16695000 14183000 5676 1653 5531 105587;105588;105589;105590;105591;105592;105593;105594;105595;105596;105597;105598;105599;105600;105601;105602;105603;105604;105605;105606;105607;105608;105609;105610;105611;105612;105613;105614;105615;105616;105617 64509;64510;64511;64512;64513;64514;64515;64516;64517;64518;64519;64520;64521;64522 64519 14 EVQETIVK Unmodified 944.51786 0.51786169 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.656 15.421 2 0.0037689 5142 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.369 46.246 287300000 13874000 18355000 14441000 0 0 0 23678000 25400000 21758000 0 0 0 22438000 25115000 21876000 0 0 0 32051000 32745000 35571000 0 0 0 5677 1148 5532 105618;105619;105620;105621;105622;105623;105624;105625;105626;105627;105628;105629 64523 64523 1 EVQPDQMINISGSLDK Unmodified 1772.8615 0.86146419 1361 P31130 ydeI Uncharacterized protein YdeI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.151 38.485 2 1.26E-10 18539 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 197.07 190.63 312380000 71717000 75224000 66390000 0 0 0 24529000 21812000 27034000 0 0 0 3737900 2606900 3564800 0 0 0 4292500 4866000 6609700 0 0 0 5678 1361 5533 105630;105631;105632;105633;105634;105635;105636;105637;105638;105639;105640;105641 64524;64525;64526;64527;64528;64529;64530;64531 64531 8 EVQPDQMINISGSLDKK Unmodified 1900.9564 0.95642721 1361 P31130 ydeI Uncharacterized protein YdeI yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 33.185 31.675 3 3.0216E-05 14866 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.375 79.271 303890000 72199000 66744000 58225000 0 0 0 25886000 25300000 25514000 0 833170 0 4062600 3874800 2937000 0 0 0 4804800 4812300 8692400 0 0 0 5679 1361 5534 105642;105643;105644;105645;105646;105647;105648;105649;105650;105651;105652;105653;105654 64532;64533;64534 64534 3 EVQVSHEVDFMTASSYGSGMSTTR Unmodified 2605.1425 0.14246643 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.002 34.445 3 5.3062E-16 16541 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.17 154.94 533760000 27749000 27678000 24836000 0 0 0 42475000 46382000 33690000 0 0 0 48811000 54794000 56117000 0 0 0 52256000 64462000 54513000 0 0 0 5680 537 5535 105655;105656;105657;105658;105659;105660;105661;105662;105663;105664;105665;105666 64535;64536;64537;64538;64539;64540;64541;64542;64543;64544;64545;64546 64542 12 EVRPDAIICTGR Unmodified 1385.7085 0.70853279 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 22.498 21.919 2;3 1.4529E-16 9166 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 236.22 207.49 2668400000 398470000 383820000 332900000 0 0 0 188560000 180530000 167000000 2939300 2323000 3174100 136670000 122750000 108720000 0 1129000 1056200 215490000 213750000 209120000 0 0 0 5681 1872 5536 105667;105668;105669;105670;105671;105672;105673;105674;105675;105676;105677;105678;105679;105680;105681;105682;105683;105684;105685;105686;105687;105688;105689;105690;105691;105692;105693;105694;105695 64547;64548;64549;64550;64551;64552;64553;64554;64555;64556;64557;64558;64559;64560;64561;64562;64563;64564;64565;64566;64567 64560 21 EVSFAGQK Unmodified 864.43413 0.43413207 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 13.778 14.631 2 0.00049393 4570 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.87 105.2 141640000 8361700 4153400 6839600 0 0 0 20781000 17979000 20592000 0 0 0 11650000 11034000 0 0 0 0 14002000 14877000 11368000 0 0 0 5682 1979 5537 105696;105697;105698;105699;105700;105701;105702;105703;105704;105705;105706 64568;64569;64570;64571;64572;64573;64574 64571 7 EVSLFSILAK Unmodified 1105.6383 0.63831118 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.528 51.281 2 9.3706E-05 25394 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 131.06 131.06 221170000 16628000 16762000 17933000 0 0 0 21537000 20085000 18479000 0 0 0 12378000 13111000 12186000 0 0 0 22911000 23608000 25552000 0 0 0 5683 1685 5538 105707;105708;105709;105710;105711;105712;105713;105714;105715;105716;105717;105718 64575;64576;64577;64578;64579;64580;64581;64582;64583;64584;64585;64586 64576 12 EVSLNSGAAVLAGLR Unmodified 1455.8045 0.80454166 171 P07862 ddlB D-alanine--D-alanine ligase B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.056 42.682 2 1.1982E-09 20853 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 156.48 141.22 146990000 19258000 19715000 0 0 0 0 0 0 0 0 0 0 0 18799000 16126000 0 0 0 27441000 23380000 22273000 0 0 0 5684 171 5539 105719;105720;105721;105722;105723;105724;105725 64587;64588;64589 64587 2 EVSVDVDALLAAINEISESEVHR Unmodified 2494.2551 0.25511165 1682 P64519 yodD Uncharacterized protein YodD yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.652 54.196 3 0.0018285 26755 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 59.814 55.614 319900000 62883000 47669000 53823000 736490 0 0 40277000 20566000 36176000 0 0 0 13417000 11474000 10792000 0 0 0 10339000 0 11743000 0 0 0 5685 1682 5540 105726;105727;105728;105729;105730;105731;105732;105733;105734;105735;105736;105737 64590 64590 1 EVSVHREEIYQR Unmodified 1543.7743 0.77430417 1757 P69913 csrA Carbon storage regulator yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 12.766 13.289 2;4 0.0027456 3204 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 72.643 56.752 34120000 0 0 0 3832000 0 3418600 0 0 0 0 0 0 0 0 0 8620800 10460000 7788800 0 0 0 0 0 0 5686 1757 5541 105738;105739;105740;105741;105742;105743;105744;105745 64591;64592 64591 2 EVTAIQAENMTR Unmodified 1361.6609 0.66091389 1438 P36562 cobT Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 22.284 22.187 2 9.879E-05 8812 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 88.681 58.11 89350000 9386400 11752000 9693300 0 0 0 8086100 7999900 7279500 0 0 0 0 8543700 0 0 0 0 7901100 8622100 10086000 0 0 0 5687 1438 5542 105746;105747;105748;105749;105750;105751;105752;105753;105754;105755 64593;64594;64595;64596;64597;64598 64598 1 EVTALGAAYLAGLAVGFWQNLDELQEK Unmodified 2905.4862 0.48617422 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 55.849 54.377 3 9.4471E-16 26721 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 136.24 129.66 280320000 0 0 0 0 0 0 0 25311000 31552000 0 0 0 35072000 47835000 44353000 0 0 0 0 51589000 44608000 0 0 0 5688 239 5543 105756;105757;105758;105759;105760;105761;105762 64599;64600;64601;64602;64603;64604;64605 64602 7 EVTEGGR Unmodified 746.35588 0.35588174 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 4.9043 5.7963 2 0.0019519 1150 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.9 74.131 329860000 0 0 0 0 0 0 48923000 0 41934000 0 0 0 36118000 37632000 36891000 0 0 0 48053000 40793000 39520000 0 0 0 5689 1119 5544 105763;105764;105765;105766;105767;105768;105769;105770 64606;64607;64608;64609;64610 64607 5 EVTTTPLAADDWK Unmodified 1445.7038 0.70382456 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.556 31.882 2 6.0813E-08 15395 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.48 143.9 9348300000 962270000 864570000 955420000 2304700 0 2774800 647240000 626120000 667380000 2110900 2184300 2220700 707960000 597990000 657220000 0 0 0 815330000 873660000 957140000 1480700 1531900 1372900 5690 333 5545 105771;105772;105773;105774;105775;105776;105777;105778;105779;105780;105781;105782;105783;105784;105785;105786;105787;105788;105789;105790;105791 64611;64612;64613;64614;64615;64616;64617;64618;64619;64620;64621;64622;64623;64624;64625;64626 64613 16 EVTVEDLMK Unmodified 1062.5267 0.52671182 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.914 34.159 2 0.00014884 16794 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.03 89.804 980670000 76924000 66481000 59502000 0 939470 1040100 91205000 102070000 82634000 1411600 1656000 1934800 99243000 85721000 83672000 0 0 0 73508000 81328000 70281000 0 0 1126400 5691 540 5546 105792;105793;105794;105795;105796;105797;105798;105799;105800;105801;105802;105803;105804;105805;105806;105807;105808;105809 64627;64628;64629;64630;64631;64632;64633 64628 7 EVVDFCHR Unmodified 1060.476 0.47601366 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 16.091 16.779 2;3 0.00010113 5448 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 160.91 160.91 6242200000 397580000 400460000 341990000 0 0 0 936610000 937030000 869190000 9611700 5629600 5396300 422370000 358690000 334000000 0 0 0 426120000 382260000 415300000 0 0 0 5692 1045 5547 105810;105811;105812;105813;105814;105815;105816;105817;105818;105819;105820;105821;105822;105823;105824;105825;105826;105827;105828;105829;105830;105831;105832;105833;105834;105835;105836;105837;105838;105839 64634;64635;64636;64637;64638;64639;64640;64641;64642;64643;64644;64645;64646;64647;64648;64649;64650;64651;64652;64653;64654;64655;64656;64657;64658;64659;64660;64661;64662 64660 29 EVVDTYK Unmodified 852.4229 0.42289868 1897 P77318 ydeN Uncharacterized sulfatase YdeN yes yes 0 0 0 By MS/MS By matching 1 1 12.979 13.433 2 0.027975 4247 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.093 64.268 21705000 21525000 0 0 0 0 0 0 0 0 0 180470 0 0 0 0 0 0 0 0 0 0 0 0 0 5693 1897 5548 105840;105841 64663 64663 1 EVVDWETR Unmodified 1032.4876 0.4876242 1720 P68206 yjbJ UPF0337 protein YjbJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.529 23.549 2 3.0288E-06 9963 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 181.49 174.07 11934000000 2504000000 2567200000 2357800000 0 0 0 1183100000 1061700000 1122400000 0 0 0 152010000 156390000 136830000 0 0 0 240520000 227300000 225110000 0 0 0 5694 1720 5549 105842;105843;105844;105845;105846;105847;105848;105849;105850;105851;105852;105853 64664;64665;64666;64667;64668;64669;64670;64671;64672;64673;64674;64675 64674 12 EVVEEAYAADPEMIASAACDIQAVR Unmodified 2707.2469 0.24693151 511 P0A9D4 cysE Serine acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.147 50.899 3 3.0587E-22 24888 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.68 166.05 256250000 34879000 35625000 30898000 0 0 0 11894000 10238000 14187000 0 0 0 11450000 14021000 13239000 0 0 0 29437000 24052000 26328000 0 0 0 5695 511 5550 105854;105855;105856;105857;105858;105859;105860;105861;105862;105863;105864;105865 64676;64677;64678;64679;64680;64681;64682 64679 7 EVVEQEYR Unmodified 1050.4982 0.49818889 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.443 14.309 2 2.2653E-06 4504 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 186.94 126.58 3628200000 269490000 259790000 240510000 0 0 0 542960000 470990000 470620000 0 0 0 235740000 237710000 203970000 0 0 0 237550000 226440000 232430000 0 0 0 5696 277 5551 105866;105867;105868;105869;105870;105871;105872;105873;105874;105875;105876;105877 64683;64684;64685;64686 64683 2 EVVEWLR Unmodified 929.49707 0.49706667 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.408 32.96 2 0.0015084 15076 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.75 76.524 1223100000 120290000 115440000 97148000 0 0 0 97085000 105400000 99857000 0 0 0 88260000 86196000 83091000 0 0 0 101790000 107990000 120520000 0 0 0 5697 635 5552 105878;105879;105880;105881;105882;105883;105884;105885;105886;105887;105888;105889 64687;64688;64689;64690;64691;64692;64693;64694;64695 64694 9 EVVFASIDTGTPAK Unmodified 1433.7402 0.74021007 1968 Q46938 kduI 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 34.381 32.689 2 0.00094887 15737 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 69.815 53.562 250630000 0 0 0 0 0 0 0 60291000 51174000 0 0 0 0 0 0 0 0 0 65565000 0 70315000 0 1692400 1595200 5698 1968 5553 105890;105891;105892;105893;105894;105895 64696;64697 64697 0 EVVFPTHCPVCGSDVER Unmodified 1986.8928 0.8927811 1102 P15042 ligA DNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 26.236 25.339 2;3 8.214E-11 11708 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 144.05 140.08 682120000 54376000 49864000 43475000 0 0 0 53104000 51351000 56788000 0 0 0 49884000 56928000 50734000 8127400 4911300 5775200 65563000 64880000 66355000 0 0 0 5699 1102 5554 105896;105897;105898;105899;105900;105901;105902;105903;105904;105905;105906;105907;105908;105909;105910;105911;105912;105913;105914;105915;105916;105917;105918;105919;105920;105921;105922;105923 64698;64699;64700;64701;64702;64703;64704;64705;64706;64707;64708;64709;64710;64711;64712;64713;64714;64715 64702 18 EVVIGFGHPVYTIADPR Unmodified 1868.9785 0.97848328 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 40.58 39.019 3 0.037012 18773 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 38.889 22.223 692580000 240340000 228700000 203860000 1744700 1710100 1765800 0 0 0 0 0 0 14468000 0 0 0 0 0 0 0 0 0 0 0 5700 1374 5555 105924;105925;105926;105927;105928;105929;105930 64716;64717;64718 64718 3 EVVLGMAHR Unmodified 1010.5331 0.5331346 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.951 17.458 2 1.1368E-05 6362 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 164.89 153.82 1320100000 124780000 133890000 124070000 0 0 0 56759000 55890000 49846000 2021000 2214500 1278700 101640000 85001000 70543000 0 0 0 175560000 171650000 149590000 5669900 5223300 4429900 5701 937 5556 105931;105932;105933;105934;105935;105936;105937;105938;105939;105940;105941;105942;105943;105944;105945;105946;105947;105948 64719;64720;64721;64722;64723;64724;64725;64726;64727 64720 9 EVVLPFNK Unmodified 944.53312 0.53311783 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 32.425 31.223 2 0.00079188 14642 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.98 107.35 816440000 183160000 170060000 139830000 0 0 0 0 0 0 0 0 0 17942000 23285000 20229000 0 0 0 85238000 84666000 92024000 0 0 0 5702 65 5557 105949;105950;105951;105952;105953;105954;105955;105956;105957 64728;64729;64730;64731;64732;64733;64734;64735;64736 64732 9 EVVLTDAGQQLALR Unmodified 1511.8308 0.83075641 743 P0ACR7 yfeR Uncharacterized HTH-type transcriptional regulator YfeR yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 36.743 36.832 2 2.5695E-05 13406 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 91.855 81.483 4519900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2218800 1076600 1224500 0 0 0 0 0 0 5703 743 5558 105958;105959;105960 64737 64737 1 EWAANRPELQALCTQYGELAQAGTQR Unmodified 2960.4199 0.41990234 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 1 1 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 42.94 41.313 3;4 1.0554E-51 20551 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 247.39 244.58 1171000000 48483000 42178000 30257000 30644000 35375000 23223000 43518000 34505000 31150000 31177000 40122000 40354000 32958000 37446000 45136000 11590000 12110000 11020000 123240000 131400000 114880000 75608000 75769000 68910000 5704 215 5559 105961;105962;105963;105964;105965;105966;105967;105968;105969;105970;105971;105972;105973;105974;105975;105976;105977;105978;105979;105980;105981;105982;105983;105984;105985;105986;105987;105988;105989;105990;105991;105992;105993;105994;105995;105996;105997;105998;105999;106000 64738;64739;64740;64741;64742;64743;64744;64745;64746;64747;64748;64749;64750;64751;64752;64753;64754;64755;64756;64757;64758;64759;64760;64761;64762;64763;64764;64765 64742 28 EWANDLDQLINLEK Unmodified 1699.8417 0.84171503 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 3 1 2 2 2 1 2 1 2 1 2 1 1 1 2 2 2 1 1 1 53.8 52.504 2;3 2.8446E-11 24851 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 174.4 165.4 1239200000 37300000 36541000 41955000 0 1364900 0 114800000 117260000 113950000 0 54101000 38842000 88477000 10676000 80285000 30660000 22271000 35830000 128070000 134170000 116190000 12840000 9431700 14203000 5705 30 5560 106001;106002;106003;106004;106005;106006;106007;106008;106009;106010;106011;106012;106013;106014;106015;106016;106017;106018;106019;106020;106021;106022;106023;106024;106025;106026;106027;106028;106029;106030;106031;106032;106033;106034 64766;64767;64768;64769;64770;64771;64772;64773;64774;64775;64776;64777;64778;64779;64780;64781;64782;64783 64780 18 EWAPLVMEGR Unmodified 1186.5805 0.58047873 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.922 38.248 2 0.00029674 18574 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.06 126.95 189720000 5770000 4292300 4017900 773540 924860 593450 7118900 7912500 0 4576400 3428400 4966000 7911400 7602000 9166500 2692800 0 1803600 27760000 34979000 30210000 8168700 8382200 6672700 5706 1435 5561 106035;106036;106037;106038;106039;106040;106041;106042;106043;106044;106045;106046;106047;106048;106049;106050;106051;106052;106053;106054;106055;106056 64784;64785;64786;64787;64788 64785 5 EWAQAGFLNIVGGCCGTTPQHIAAMSR Unmodified 2931.3578 0.35783613 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 47.952 46.446 3 9.1695E-08 22619 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.46 103.17 77648000 0 9806900 9223300 0 0 0 6126300 9287400 6865400 2893600 0 0 4784300 0 3402800 0 0 0 7774000 9922500 7561000 0 0 0 5707 1083 5562 106057;106058;106059;106060;106061;106062;106063;106064;106065;106066;106067 64789;64790 64790 2 EWEGLQDTVFASPPCR Unmodified 1890.857 0.85704752 653 P0ABE2 bolA Protein BolA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 46.646 45.255 2;3 2.6797E-49 22182 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 274.53 274.53 374660000 36386000 34535000 27954000 0 0 0 34889000 40445000 35343000 0 0 0 31248000 31689000 25923000 0 0 0 23853000 31093000 21306000 0 0 0 5708 653 5563 106068;106069;106070;106071;106072;106073;106074;106075;106076;106077;106078;106079;106080;106081;106082;106083;106084;106085;106086;106087;106088;106089;106090;106091 64791;64792;64793;64794;64795;64796;64797;64798;64799;64800;64801;64802 64797 11 EWIEHVQEVAPK Unmodified 1463.7409 0.74087877 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 1 1 2 2 2 1 1 1 1 2 2 26.216 25.008 2;3 8.1235E-05 11567 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 149.33 134.19 457320000 57305000 52782000 17528000 0 414440 0 62598000 60674000 58883000 0 0 0 21180000 17828000 16401000 0 0 0 23010000 32933000 35787000 0 0 0 5709 1282 5564 106092;106093;106094;106095;106096;106097;106098;106099;106100;106101;106102;106103;106104;106105;106106;106107;106108;106109;106110;106111 64803;64804 64803 1 EWILDQR Unmodified 958.48723 0.48723027 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 32.568 31.295 2 0.12118 14665 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 50.025 42.353 62644000 12481000 8174600 9110300 0 0 0 4691500 0 0 0 0 0 4898300 3800100 2805000 0 0 0 5706800 6064600 4911700 0 0 0 5710 1429 5565 106112;106113;106114;106115;106116;106117;106118;106119;106120;106121 64805 64805 1 EWLAEQGMVK Unmodified 1189.5801 0.58014438 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.251 29.894 2 9.3701E-05 14032 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.06 126.33 902450000 254930000 231710000 223270000 0 0 0 31940000 28355000 31766000 0 0 0 15441000 17852000 16592000 0 0 0 18044000 17675000 14873000 0 0 0 5711 1160 5566 106122;106123;106124;106125;106126;106127;106128;106129;106130;106131;106132;106133 64806;64807;64808;64809;64810;64811;64812;64813;64814;64815;64816 64812 11 EWLECSAGQFNQIDPNSTKPQSLINWDGFR Unmodified 3536.6419 0.64191637 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.345 51.098 3 2.1651E-11 24819 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.43 116.73 194320000 22920000 28806000 26063000 0 0 0 13850000 14541000 10705000 0 0 0 15701000 9801000 9468500 0 0 0 11840000 15337000 15283000 0 0 0 5712 184 5567 106134;106135;106136;106137;106138;106139;106140;106141;106142;106143;106144;106145 64817 64817 1 EWLNADELR Unmodified 1144.5513 0.55128709 1466 P37339 lhgO L-2-hydroxyglutarate oxidase LhgO yes yes 0 0 0 By matching By MS/MS 1 1 35.186 33.584 2 0.089667 11610 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 51.066 47.907 2318200 0 0 0 911770 0 1406400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5713 1466 5568 106146;106147 64818 64818 0 EWLTSVDHK Unmodified 1113.5455 0.54547343 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 20.291 20.576 2 0.10735 8059 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 47.574 38.36 7526300 2168400 0 0 0 0 0 0 2250600 0 0 0 0 0 0 0 0 0 0 3107400 0 0 0 0 0 5714 660 5569 106148;106149;106150 64819 64819 0 EWMDNFHPMR Unmodified 1361.5645 0.56451109 457 P0A8T1 prmA Ribosomal protein L11 methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.661 31.309 2;3 0.00019611 14826 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 103.55 103.55 469160000 30648000 28910000 30075000 0 0 0 30298000 38936000 42998000 0 0 0 39599000 33695000 33812000 0 0 0 55845000 50930000 53416000 0 0 0 5715 457 5570 106151;106152;106153;106154;106155;106156;106157;106158;106159;106160;106161;106162;106163;106164;106165;106166;106167;106168;106169;106170;106171;106172;106173;106174 64820;64821;64822;64823;64824;64825;64826;64827;64828;64829;64830;64831;64832;64833;64834;64835 64823 12 EWQPVLTYGDLTR Unmodified 1576.7886 0.78855725 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.022 44.463 2 6.9725E-09 20813 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 166.55 150.32 134020000 0 0 0 0 0 0 22650000 19529000 18501000 0 0 0 25493000 24436000 23409000 0 0 0 0 0 0 0 0 0 5716 186 5571 106175;106176;106177;106178;106179;106180 64836;64837;64838;64839;64840;64841 64840 6 EWSFISSSLVK Unmodified 1281.6605 0.66050319 249 P0A6I6 coaD Phosphopantetheine adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.734 45.344 2 0.0022534 22582 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.886 78.526 206430000 19985000 19030000 14649000 0 0 0 17727000 19509000 14514000 0 0 0 12935000 11659000 8687900 0 0 0 24400000 22137000 21199000 0 0 0 5717 249 5572 106181;106182;106183;106184;106185;106186;106187;106188;106189;106190;106191;106192 64842;64843;64844;64845;64846;64847;64848;64849;64850;64851;64852;64853 64842 12 EWVAVYYDNPDETPAEK Unmodified 2024.9004 0.90035212 1402 P33012 sbmC DNA gyrase inhibitor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.927 37.316 2 1.886E-31 17958 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 242.48 242.31 587200000 43189000 39449000 38716000 54900000 68559000 60648000 35298000 32966000 37092000 28316000 29021000 28497000 11869000 9603900 7860000 3599000 2405800 1947800 9137500 6829800 7239800 10948000 10209000 8900200 5718 1402 5573 106193;106194;106195;106196;106197;106198;106199;106200;106201;106202;106203;106204;106205;106206;106207;106208;106209;106210;106211;106212;106213;106214;106215;106216 64854;64855;64856;64857;64858;64859;64860;64861;64862;64863;64864;64865;64866;64867;64868;64869;64870;64871;64872;64873 64870 20 EWVNPNPK Unmodified 982.48723 0.48723027 1871 P76550 yffS Uncharacterized protein YffS yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.718 17.475 2 0.0021041 6358 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.29 93.648 124150000 17436000 13828000 13804000 0 0 0 11648000 14256000 9770500 0 0 0 6147700 5347200 6358100 0 0 0 8127200 8710400 8717000 0 0 0 5719 1871 5574 106217;106218;106219;106220;106221;106222;106223;106224;106225;106226;106227;106228 64874;64875;64876;64877;64878;64879;64880;64881;64882 64875 9 EYAATQVDGQR Unmodified 1236.5735 0.57347909 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.204 14.07 2 1.2555E-19 4320 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 230.7 224.08 1980800000 214180000 207120000 202380000 0 0 0 165390000 180620000 219880000 0 0 0 109460000 103670000 94871000 0 0 0 185400000 161830000 136000000 0 0 0 5720 58 5575 106229;106230;106231;106232;106233;106234;106235;106236;106237;106238;106239;106240 64883;64884;64885;64886;64887;64888;64889;64890;64891;64892;64893;64894 64889 12 EYADAMMK Unmodified 957.39359 0.39358916 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.522 19.125 2 0.0062633 7046 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 85.265 85.265 2341000000 699200000 742330000 681560000 2952600 2086900 2551400 25630000 24988000 26096000 0 0 0 12240000 11087000 11389000 0 0 0 30621000 32759000 35469000 0 0 0 5721 1219 5576 106241;106242;106243;106244;106245;106246;106247;106248;106249;106250;106251;106252;106253;106254;106255 64895;64896;64897;64898;64899;64900;64901;64902;64903;64904;64905 64905 11 EYADAMMK Oxidation (M) 973.3885 0.38850378 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 1 0 By matching By MS/MS By matching 1 1 1 13.102 13.801 2 0.12257 4275 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 41.652 41.652 33606000 11005000 7900900 14700000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5722 1219 5576 106256;106257;106258 64906 64906 0 EYADHIWHIDPVR Unmodified 1649.795 0.79503961 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 30.545 29.189 3;4 0.00039386 13552 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.963 66.396 369120000 35853000 34194000 29131000 0 0 0 44292000 52394000 43644000 0 0 0 20569000 28277000 22766000 0 0 0 18676000 16606000 22716000 0 0 0 5723 709 5577 106259;106260;106261;106262;106263;106264;106265;106266;106267;106268;106269;106270;106271;106272;106273;106274;106275;106276;106277;106278;106279;106280;106281;106282 64907;64908;64909;64910;64911;64912;64913;64914;64915 64910 9 EYADHIWHIDPVRL Unmodified 1762.8791 0.87910359 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 40.037 38.363 3;4 0.0094573 19005 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 45.654 41.482 260120000 26683000 28229000 25662000 0 0 0 32752000 30116000 29391000 0 0 0 17928000 12816000 11190000 0 0 0 14347000 16049000 14953000 0 0 0 5724 709 5578 106283;106284;106285;106286;106287;106288;106289;106290;106291;106292;106293;106294;106295;106296;106297;106298;106299;106300;106301;106302;106303;106304;106305;106306 64916;64917;64918 64918 3 EYAEVFEGTAEWK Unmodified 1557.6987 0.69873919 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.125 38.382 2 1.4435E-17 18460 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 215.06 208.53 117470000 29877000 27112000 24601000 0 0 0 8279000 7100900 8461100 0 0 0 0 0 0 0 0 0 4244200 4789400 3005100 0 0 0 5725 1254 5579 106307;106308;106309;106310;106311;106312;106313;106314;106315 64919;64920;64921;64922;64923;64924;64925;64926 64925 8 EYAPAEDPGVVSVSEIYQYYK Unmodified 2406.1267 0.12672324 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.369 50.122 2;3 1.4613E-34 23608 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 141.22 133.42 8122900000 581840000 545980000 431830000 0 0 0 725270000 686540000 700400000 0 0 0 731340000 747810000 663500000 0 0 0 762650000 773690000 772020000 0 0 0 5726 402 5580 106316;106317;106318;106319;106320;106321;106322;106323;106324;106325;106326;106327;106328;106329;106330;106331;106332;106333;106334;106335;106336;106337;106338;106339 64927;64928;64929;64930;64931;64932;64933;64934;64935;64936;64937;64938;64939;64940;64941;64942;64943;64944;64945;64946;64947;64948;64949;64950 64946 24 EYAQLSDVSR Unmodified 1166.5568 0.5567664 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 20.633 21.107 2 8.0544E-09 8335 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 186.76 177.18 312450000 43644000 47096000 64464000 0 0 0 0 0 0 0 0 0 21921000 22627000 25508000 0 0 0 32914000 32643000 21631000 0 0 0 5727 345 5581 106340;106341;106342;106343;106344;106345;106346;106347;106348 64951;64952;64953;64954;64955;64956 64953 6 EYASFTQEQVDK Unmodified 1443.6518 0.65178899 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.481 21.88 2 3.9669E-14 9293 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 251.98 249.36 5744100000 455490000 469410000 427810000 119370000 124670000 105620000 663820000 678790000 617920000 105950000 109600000 107660000 255990000 253210000 244290000 0 3702500 4356400 232010000 235850000 219430000 101630000 100780000 106770000 5728 548 5582 106349;106350;106351;106352;106353;106354;106355;106356;106357;106358;106359;106360;106361;106362;106363;106364;106365;106366;106367;106368;106369;106370;106371;106372 64957;64958;64959;64960;64961;64962;64963;64964;64965;64966;64967;64968;64969;64970;64971;64972;64973;64974;64975;64976;64977;64978;64979;64980 64969 24 EYASFTQEQVDKIFR Unmodified 1859.9054 0.90537792 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 2 2 39.711 37.737 2;3 2.9912E-07 13269 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 123.02 121.99 97251000 0 0 0 16758000 18377000 14434000 0 0 0 5199800 4896500 3961700 0 0 0 0 0 0 0 973670 0 9539800 10085000 13026000 5729 548 5583 106373;106374;106375;106376;106377;106378;106379;106380;106381;106382;106383;106384;106385;106386;106387 64981;64982;64983;64984;64985;64986;64987 64985 7 EYAVGTESYELGFSK Unmodified 1678.7726 0.77263241 1581 P45799 nudE ADP compounds hydrolase NudE yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.901 36.228 2 1.7113E-09 17465 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 155.99 154.88 94498000 8490900 10027000 7245300 0 0 0 6750400 7312900 5863200 0 0 0 6422100 5080800 5628800 0 0 0 12710000 9768200 9198000 0 0 0 5730 1581 5584 106388;106389;106390;106391;106392;106393;106394;106395;106396;106397;106398;106399 64988;64989;64990;64991 64989 3 EYAVQQNINILR Unmodified 1459.7783 0.77832691 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.214 33.762 2 6.1721E-14 12992 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 160.88 151.92 168950000 3767000 0 9998800 3420100 3029800 3208200 0 0 0 8943700 8302600 9260500 14451000 0 0 1617600 1019600 1368100 23258000 24288000 41288000 0 6122000 5608900 5731 997 5585 106400;106401;106402;106403;106404;106405;106406;106407;106408;106409;106410;106411;106412;106413;106414;106415;106416;106417 64992;64993;64994;64995;64996;64997;64998;64999;65000;65001 64995 9 EYAYWMDGVENLQAGQQEK Unmodified 2257.995 0.99499756 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 1 2 2 1 1 1 2 44.927 43.433 2;3 2.1833E-67 21069 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 301.35 298.89 172800000 42571000 32271000 34895000 0 0 0 13084000 12046000 5372400 0 0 0 6239700 6081600 3766900 0 0 0 3137100 4813300 8519100 0 0 0 5732 1091 5586 106418;106419;106420;106421;106422;106423;106424;106425;106426;106427;106428;106429;106430;106431;106432;106433;106434;106435;106436;106437 65002;65003;65004;65005;65006;65007;65008 65007 7 EYCDLLR Unmodified 967.44332 0.44331654 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.98 25.821 2 0.001881 11955 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.15 95.034 2410400000 163310000 171600000 144370000 0 0 779670 172380000 165790000 160180000 0 0 0 232220000 212900000 214660000 0 0 0 248200000 264090000 259900000 0 0 0 5733 86 5587 106438;106439;106440;106441;106442;106443;106444;106445;106446;106447;106448;106449;106450 65009;65010;65011;65012;65013;65014;65015;65016;65017;65018;65019;65020 65010 12 EYCGHGIGR Unmodified 1047.4556 0.45561256 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.128 11.96 2 5.4146E-08 2880 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 192.56 187.88 303580000 29678000 28839000 22933000 0 0 0 26522000 26389000 25092000 0 0 0 20959000 19301000 22944000 0 0 0 26518000 30185000 24224000 0 0 0 5734 829 5588 106451;106452;106453;106454;106455;106456;106457;106458;106459;106460;106461;106462 65021;65022;65023;65024;65025;65026;65027;65028;65029;65030;65031;65032 65030 12 EYCIKPMNCPGHVQIFNQGLK Unmodified 2532.2076 0.20759007 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 1 2 2 2 1 1 31.623 30.241 3;4 3.2732E-75 14218 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 307.55 305.05 3173600000 297850000 268570000 219400000 1921000 1921700 2089500 283890000 240330000 238610000 0 0 1454400 221510000 226280000 281550000 0 0 2131000 299980000 288730000 294560000 1472300 0 1382700 5735 445 5589 106463;106464;106465;106466;106467;106468;106469;106470;106471;106472;106473;106474;106475;106476;106477;106478;106479;106480;106481;106482;106483;106484;106485;106486;106487;106488;106489;106490;106491;106492;106493 65033;65034;65035;65036;65037;65038;65039;65040;65041;65042;65043 65037 11 EYDDIRS Unmodified 896.38758 0.3875758 1517 P39274 yjdJ Uncharacterized protein YjdJ yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.506 14.372 2 0.10213 4520 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 57.281 49.341 160440000 13207000 11211000 10095000 0 0 0 28169000 27721000 26361000 0 0 0 7880600 6731700 7533900 0 0 0 7486700 5942300 8104800 0 0 0 5736 1517 5590 106494;106495;106496;106497;106498;106499;106500;106501;106502;106503;106504;106505 65044;65045;65046;65047 65045 4 EYDHIKDVNDLPELLK Unmodified 1939.9891 0.98910755 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 1 2 2 2 1 37.467 35.776 2;4 5.9774E-33 17624 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 278.97 270.46 2101100000 141260000 129840000 123910000 2066200 2651300 0 181880000 202900000 174380000 3713800 0 2664200 207860000 162930000 142120000 1903400 0 0 207700000 213230000 198100000 0 0 1989000 5737 325 5591 106506;106507;106508;106509;106510;106511;106512;106513;106514;106515;106516;106517;106518;106519;106520;106521;106522;106523;106524;106525;106526;106527;106528;106529;106530;106531;106532;106533;106534;106535 65048;65049;65050;65051;65052;65053;65054;65055;65056;65057;65058;65059;65060;65061;65062;65063;65064;65065;65066;65067;65068;65069;65070;65071 65051 24 EYDLDLITTAPTVVYEVETTSR Unmodified 2514.2377 0.23773025 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 55.231 53.819 3 1.3013E-05 21550 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 88.036 85.312 35180000 0 13389000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5483200 7449300 8857900 5738 1633 5592 106536;106537;106538;106539 65072 65072 1 EYDSMVVR Unmodified 997.45388 0.45388123 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.649 21.009 2 0.010005 8234 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.116 51.591 144780000 16597000 15973000 17078000 0 0 0 9512500 10659000 11816000 0 0 0 9323000 8544500 7007900 0 1613700 955010 12037000 11798000 11869000 0 0 0 5739 1355 5593 106540;106541;106542;106543;106544;106545;106546;106547;106548;106549;106550;106551;106552;106553 65073;65074;65075;65076 65075 3 EYDTFCGAIDK Unmodified 1317.5547 0.55471749 82 P03817 mioC Protein MioC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.311 27.063 2 0.00026522 12756 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 96.143 85.912 323070000 34672000 27671000 28294000 0 0 0 20080000 21965000 21522000 0 0 0 21311000 19313000 23478000 0 0 0 36800000 37334000 30632000 0 0 0 5740 82 5594 106554;106555;106556;106557;106558;106559;106560;106561;106562;106563;106564;106565 65077;65078 65077 2 EYDTFCGAIDKLEAELK Unmodified 2000.9401 0.94010844 82 P03817 mioC Protein MioC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 52.164 50.925 2;3 1.3611E-18 25047 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 234.04 227.6 823950000 77085000 83877000 73590000 0 0 0 42802000 42587000 60737000 0 0 0 54925000 61088000 60238000 0 0 0 83111000 94159000 89752000 0 0 0 5741 82 5595 106566;106567;106568;106569;106570;106571;106572;106573;106574;106575;106576;106577;106578;106579;106580;106581;106582;106583;106584;106585;106586;106587;106588 65079;65080;65081;65082;65083;65084;65085;65086;65087;65088;65089;65090;65091;65092;65093 65086 15 EYDTNVLKPFQEVLNDPAPK Unmodified 2316.1638 0.16377745 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.579 45.972 3 7.4885E-05 22451 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 74.953 71.987 111470000 0 0 0 1660100 3395400 0 7943000 10063000 7174900 7159700 5673500 5113600 10614000 0 9056500 0 0 0 12662000 14135000 10039000 0 2863400 3912300 5742 1047 5596 106589;106590;106591;106592;106593;106594;106595;106596;106597;106598;106599;106600;106601;106602;106603 65094;65095 65094 2 EYEKPLNVYGYSK Unmodified 1588.7773 0.77732386 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 22.789 22.136 2;3 6.3618E-09 9354 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 203.51 203.16 1375700000 98910000 87613000 85241000 0 0 0 146010000 169730000 141000000 18240000 15319000 6148200 80305000 88268000 87483000 0 0 0 115290000 121530000 114640000 0 0 0 5743 1716 5597 106604;106605;106606;106607;106608;106609;106610;106611;106612;106613;106614;106615;106616;106617;106618;106619;106620;106621;106622;106623;106624;106625;106626;106627;106628;106629;106630;106631 65096;65097;65098;65099;65100;65101;65102;65103;65104;65105;65106;65107;65108;65109;65110;65111;65112;65113;65114;65115;65116;65117 65112 22 EYEMEVVR Unmodified 1053.4801 0.48009598 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.594 22.936 2 0.00020378 9831 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.63 137 1164800000 264700000 265300000 252650000 0 602000 0 0 0 0 0 0 0 25362000 25061000 30842000 0 0 0 93638000 92517000 110950000 0 3141800 0 5744 65 5598 106632;106633;106634;106635;106636;106637;106638;106639;106640;106641;106642;106643 65118;65119;65120;65121;65122;65123;65124;65125 65124 7 EYGIINHDVDSFAPR Unmodified 1731.8216 0.82164829 1780 P75825 hcp Hydroxylamine reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.159 31.621 3 6.1669E-07 14505 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 93.823 93.316 93082000 0 0 0 0 0 0 9686200 9338800 15820000 1845400 0 2050000 10203000 11604000 10048000 1579500 0 0 7830600 7074100 6002600 0 0 0 5745 1780 5599 106644;106645;106646;106647;106648;106649;106650;106651;106652;106653;106654;106655 65126;65127;65128;65129;65130;65131 65130 4 EYGSGSSR Unmodified 841.35661 0.35661003 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 7.0711 7.8037 2 0.0078141 1584 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 82.716 78.699 246100000 89911000 86126000 70063000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5746 1254 5600 106656;106657;106658 65132;65133;65134 65132 3 EYGVESLHK Unmodified 1060.5189 0.51892433 1257 P25524 codA Cytosine deaminase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 14.899 15.598 2 0.0054877 5165 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 74.301 52.341 32448000 11560000 8799500 12089000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5747 1257 5601 106659;106660;106661 65135;65136 65136 2 EYHLLNPVIVDCTSSQAVADQYADFLR Unmodified 3123.4971 0.49714961 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 53.239 51.853 3 1.7966E-41 25235 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 219.38 203.5 936770000 207490000 172220000 158070000 3214300 0 0 0 0 0 0 0 0 52298000 0 55309000 0 0 0 92247000 103570000 92359000 0 0 0 5748 34 5602 106662;106663;106664;106665;106666;106667;106668;106669;106670 65137;65138;65139;65140;65141;65142;65143;65144 65139 8 EYIDFAGGIAVNALGHAHPELR Unmodified 2349.1866 0.18657858 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 44.007 42.653 3;4 1.0238E-10 20777 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.16 111.04 789860000 261620000 264580000 252250000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5730800 5672700 0 0 0 5749 1919 5603 106671;106672;106673;106674;106675;106676;106677 65145;65146;65147;65148;65149;65150 65148 6 EYKKGDEIAAVVLQVDAER Unmodified 2132.1113 0.11134795 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 35.109 33.615 4 0.005176 11139 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 46.663 43.128 24023000 0 0 0 1063100 1469600 1373600 0 0 0 2562100 2215400 2465500 0 0 0 2444100 2741100 3614700 0 0 0 0 2053300 2020100 5750 990 5604 106678;106679;106680;106681;106682;106683;106684;106685;106686;106687;106688 65151;65152;65153 65151 3 EYLDFAGGIAVLNTGHLHPK Unmodified 2151.1113 0.11128837 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 1 1 1 1 1 2 2 42.378 40.57 3;4 4.3254E-07 19745 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.92 97.53 1078200000 265230000 248040000 248560000 908320 0 785460 110470000 24861000 31409000 2661200 3764200 3920900 13317000 11626000 9331000 0 0 0 0 47370000 55918000 0 0 0 5751 1194 5605 106689;106690;106691;106692;106693;106694;106695;106696;106697;106698;106699;106700;106701;106702;106703;106704;106705;106706;106707;106708;106709;106710 65154;65155;65156;65157;65158;65159;65160;65161;65162;65163;65164;65165 65161 12 EYLGELFSR Unmodified 1112.5502 0.55022446 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.34 39.495 2 2.3368E-05 19121 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 155.88 145.89 182620000 7925700 7014800 6829300 1356500 2225700 1911700 19743000 18674000 16854000 3698400 4584100 3848600 10620000 9851900 10152000 0 0 0 17971000 18109000 18424000 2830400 0 0 5752 324 5606 106711;106712;106713;106714;106715;106716;106717;106718;106719;106720;106721;106722;106723;106724;106725;106726;106727;106728;106729 65166;65167;65168;65169;65170;65171 65168 4 EYLIAALK Unmodified 919.53787 0.53786886 138 P06986 hisC Histidinol-phosphate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.521 33.964 2 0.016342 16283 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 68.7 58.275 237430000 37081000 33558000 29952000 0 0 0 18100000 17066000 15019000 0 0 0 12032000 15272000 14278000 0 0 0 14831000 15372000 14871000 0 0 0 5753 138 5607 106730;106731;106732;106733;106734;106735;106736;106737;106738;106739;106740;106741 65172;65173;65174;65175;65176;65177;65178;65179;65180;65181;65182;65183 65176 12 EYLPASYHEGSK Unmodified 1379.6357 0.635745 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 15.548 16.176 2;3 1.1515E-05 5136 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.91 125.32 6904300000 712530000 640520000 629660000 70141000 67588000 76825000 744470000 835370000 743790000 97590000 89193000 97581000 355630000 286880000 286310000 0 0 0 308400000 270590000 299410000 95775000 97082000 98949000 5754 548 5608 106742;106743;106744;106745;106746;106747;106748;106749;106750;106751;106752;106753;106754;106755;106756;106757;106758;106759;106760;106761;106762;106763;106764;106765;106766;106767;106768;106769;106770;106771;106772;106773;106774;106775;106776;106777;106778;106779;106780;106781;106782;106783 65184;65185;65186;65187;65188;65189;65190;65191;65192;65193;65194;65195;65196;65197;65198;65199;65200;65201;65202;65203;65204;65205;65206;65207;65208;65209;65210;65211;65212;65213;65214;65215;65216;65217;65218;65219;65220;65221;65222 65221 36 EYLPASYHEGSKNPVAR Unmodified 1916.9381 0.93807503 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 2 2 2 16.73 17.092 3;4 4.8817E-05 4759 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 81.428 81.161 178990000 0 0 0 34077000 34189000 32002000 0 0 0 13411000 2939500 10726000 0 0 0 1168300 0 0 0 0 0 9610500 14980000 25892000 5755 548 5609 106784;106785;106786;106787;106788;106789;106790;106791;106792;106793;106794;106795;106796;106797;106798;106799;106800;106801 65223;65224;65225;65226;65227;65228;65229;65230;65231;65232;65233 65227 11 EYLQQLGEHQTTSIGSSLK Unmodified 2118.0593 0.059312378 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 29.574 28.31 2;3 2.2836E-67 13000 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 357.64 326 931480000 131600000 134250000 117700000 0 526470 0 96238000 79369000 87304000 0 0 0 45286000 43253000 38908000 0 0 0 59671000 48489000 48896000 0 0 0 5756 1193 5610 106802;106803;106804;106805;106806;106807;106808;106809;106810;106811;106812;106813;106814;106815;106816;106817;106818;106819;106820;106821;106822;106823;106824;106825;106826 65234;65235;65236;65237;65238;65239;65240;65241;65242;65243;65244;65245;65246;65247;65248 65245 15 EYLSQYPR Unmodified 1054.5084 0.50835964 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.389 20.61 2 0.00075967 8229 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 124.34 108.19 156050000 11717000 11692000 0 0 0 0 14730000 11977000 13827000 1574700 0 1899800 11180000 10086000 13717000 0 0 0 15540000 17665000 16397000 2221300 0 1820700 5757 1617 5611 106827;106828;106829;106830;106831;106832;106833;106834;106835;106836;106837;106838;106839;106840;106841;106842 65249;65250 65250 2 EYNAAPPLQGFGISAPDQVK Unmodified 2101.048 0.04801941 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 44.685 43.189 2;3 1.7437E-14 21041 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.48 135.08 500750000 122950000 120190000 100440000 0 0 0 19637000 8215100 18125000 0 0 0 16331000 14928000 15432000 0 0 0 21753000 21423000 21320000 0 0 0 5758 404 5612 106843;106844;106845;106846;106847;106848;106849;106850;106851;106852;106853;106854;106855;106856;106857;106858;106859;106860;106861;106862;106863;106864;106865 65251;65252;65253;65254;65255;65256;65257;65258;65259;65260;65261;65262;65263;65264;65265;65266;65267;65268 65261 18 EYNTVDMSPQR Unmodified 1338.5874 0.5874146 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.122 19.687 2 3.7204E-08 7177 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 177.7 138.74 236180000 14071000 16137000 14418000 0 0 0 14554000 17630000 22123000 0 0 0 20655000 20734000 15880000 0 0 0 26377000 25761000 27841000 0 0 0 5759 1421 5613 106866;106867;106868;106869;106870;106871;106872;106873;106874;106875;106876;106877 65269;65270;65271;65272;65273;65274;65275;65276;65277;65278 65277 10 EYPALLAAWEMLSQKPDLVFVDGHGISHPR Unmodified 3375.7074 0.70741716 1724 P68739 nfi Endonuclease V yes yes 0 0 1 By MS/MS By MS/MS 1 2 53.935 54.028 5 1.1015E-06 20317 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 86.304 84.622 18664000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6428800 12235000 0 0 0 0 0 0 5760 1724 5614 106878;106879;106880 65279;65280 65280 2 EYPLEWK Unmodified 963.47018 0.47018322 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.862 31.355 2 0.011123 15240 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.113 85.035 1158900000 49082000 49441000 36886000 427770 609370 386510 109740000 105090000 95413000 0 0 485900 89975000 90341000 91949000 0 0 0 135320000 151500000 152220000 0 0 0 5761 1491 5615 106881;106882;106883;106884;106885;106886;106887;106888;106889;106890;106891;106892;106893;106894;106895;106896 65281;65282;65283;65284;65285;65286;65287;65288;65289 65281 9 EYPQMAQWLQPVFASLDAK Unmodified 2221.0878 0.087775735 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.602 54.092 2 5.1368E-23 26832 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 198.74 192.46 165720000 27717000 30186000 31568000 0 0 0 14645000 12535000 15213000 0 0 0 0 0 0 0 0 0 11170000 10577000 12106000 0 0 0 5762 1420 5616 106897;106898;106899;106900;106901;106902;106903;106904;106905 65290;65291 65291 2 EYQAIEQLAEHVPGVLLLTATPEQLGMESHFAR Oxidation (M) 3692.8508 0.85084651 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 54.392 53.73 4 2.4299E-13 20262 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 113.65 112 691020000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100700000 250580000 234100000 0 0 0 36027000 37484000 32134000 5763 1616 5617 106906;106907;106908;106909;106910;106911 65292;65293;65294;65295;65296;65297 65293 562 6 EYQAIEQLAEHVPGVLLLTATPEQLGMESHFAR Unmodified 3676.8559 0.85593189 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 3 2 2 2 2 1 3 3 3 1 1 2 2 2 2 54.783 53.702 3;4;5 8.8501E-69 21334 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 258.38 256.64 23025000000 31178000 27570000 29585000 0 0 0 37958000 26373000 29247000 1871800000 1766600000 1819200000 41278000 32188000 27973000 3111500000 5329600000 5172800000 45140000 40863000 45578000 1223400000 1092700000 1222300000 5764 1616 5617 106912;106913;106914;106915;106916;106917;106918;106919;106920;106921;106922;106923;106924;106925;106926;106927;106928;106929;106930;106931;106932;106933;106934;106935;106936;106937;106938;106939;106940;106941;106942;106943;106944;106945;106946;106947;106948 65298;65299;65300;65301;65302;65303;65304;65305;65306;65307;65308;65309;65310;65311;65312;65313;65314;65315;65316;65317;65318;65319;65320 65299 23 EYQDIIR Unmodified 935.47125 0.47124585 1882 P77173 zipA Cell division protein ZipA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.957 21.857 2 0.014291 7285 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 82.913 67.977 256780000 22955000 18940000 15384000 1440000 1119500 0 6962300 0 0 4659100 4715300 4141700 18580000 18348000 17261000 0 0 0 43046000 42977000 32761000 1159400 980550 1343300 5765 1882 5618 106949;106950;106951;106952;106953;106954;106955;106956;106957;106958;106959;106960;106961;106962;106963;106964;106965;106966 65321;65322 65321 2 EYQVQLDIAMQSGK Unmodified 1608.7818 0.78175731 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 2 40.554 38.933 2 9.7079E-06 18208 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.56 105.35 82791000 0 0 0 0 0 0 0 0 3258100 0 0 0 2637100 6228300 15379000 0 0 0 20924000 13190000 21175000 0 0 0 5766 267 5619 106967;106968;106969;106970;106971;106972;106973;106974;106975;106976 65323;65324;65325;65326;65327;65328 65326 3 EYQVQLDIAMQSGKPK Oxidation (M) 1849.9244 0.9243988 267 P0A6P1 tsf Elongation factor Ts yes yes 0 1 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 2 2 1 1 1 1 1 1 26.017 24.824 2;3 3.4273E-06 10731 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 96.64 91.156 106690000 0 3347000 3148400 0 0 0 24845000 32526000 24021000 0 0 0 3000500 0 2904600 0 0 0 4297200 4544400 4058700 0 0 0 5767 267 5620 106977;106978;106979;106980;106981;106982;106983;106984;106985;106986;106987;106988 65329;65330;65331 65331 119 3 EYQVQLDIAMQSGKPK Unmodified 1833.9295 0.92948418 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 6 5 8 1 1 1 8 5 6 1 3 3 5 6 4 1 1 1 6 5 7 1 1 1 34.351 32.813 2;3 2.3978E-49 14061 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 283.95 277.69 9145400000 678310000 660860000 738090000 791300 2236200 2021400 771740000 718290000 789740000 1593200 7205800 6872800 624390000 674570000 616930000 1885000 2327500 1530400 940250000 949670000 948630000 2173800 2870900 2389300 5768 267 5620 106989;106990;106991;106992;106993;106994;106995;106996;106997;106998;106999;107000;107001;107002;107003;107004;107005;107006;107007;107008;107009;107010;107011;107012;107013;107014;107015;107016;107017;107018;107019;107020;107021;107022;107023;107024;107025;107026;107027;107028;107029;107030;107031;107032;107033;107034;107035;107036;107037;107038;107039;107040;107041;107042;107043;107044;107045;107046;107047;107048;107049;107050;107051;107052;107053;107054;107055;107056;107057;107058;107059;107060;107061;107062;107063;107064;107065;107066;107067;107068;107069;107070;107071;107072;107073;107074;107075 65332;65333;65334;65335;65336;65337;65338;65339;65340;65341;65342;65343;65344;65345;65346;65347;65348;65349;65350;65351;65352;65353;65354;65355;65356;65357;65358;65359;65360;65361;65362;65363;65364;65365;65366;65367;65368;65369;65370;65371;65372;65373;65374;65375;65376;65377;65378;65379;65380;65381;65382;65383;65384;65385;65386;65387;65388;65389;65390;65391;65392;65393;65394;65395;65396;65397;65398;65399;65400;65401;65402;65403;65404;65405;65406;65407 65344 73 EYQYQEVK Unmodified 1085.5029 0.50293991 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.593 15.302 2 0.00024649 4988 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 150.17 129.61 1434400000 88795000 81772000 91117000 0 728310 896060 156290000 145000000 130630000 1819300 0 1130600 130140000 128830000 115390000 0 0 0 119920000 117200000 124740000 0 0 0 5769 445 5621 107076;107077;107078;107079;107080;107081;107082;107083;107084;107085;107086;107087;107088;107089;107090;107091 65408;65409;65410;65411;65412;65413;65414;65415;65416;65417;65418 65412 11 EYSAMER Unmodified 884.36982 0.36981725 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.489 13.119 2 0.13568 3828 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.167 54.314 572050000 70320000 68608000 74871000 1814200 1788300 1986900 40826000 39095000 37409000 4052500 3875500 3874200 36044000 28000000 28038000 6699600 7382600 7069400 39246000 34111000 34005000 0 1542900 1392200 5770 570 5622 107092;107093;107094;107095;107096;107097;107098;107099;107100;107101;107102;107103;107104;107105;107106;107107;107108;107109;107110;107111;107112;107113;107114 65419 65419 0 EYSDTAK Unmodified 812.35521 0.35521304 1682 P64519 yodD Uncharacterized protein YodD yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 7.3296 8.0621 2 0.022706 1721 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 74.415 57.488 22376000 7002000 8345400 7028600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5771 1682 5623 107115;107116;107117 65420;65421 65420 2 EYSPLAVK Unmodified 905.48583 0.48583328 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.886 21.797 2 0.010005 8899 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 79.116 63.677 4270100000 281860000 256110000 224560000 0 0 523120 474310000 449400000 474580000 0 1228800 874070 430160000 422020000 405400000 0 0 0 286990000 278100000 280320000 981020 937020 1717900 5772 697 5624 107118;107119;107120;107121;107122;107123;107124;107125;107126;107127;107128;107129;107130;107131;107132;107133;107134;107135 65422;65423;65424;65425;65426;65427;65428;65429;65430;65431 65426 10 EYTLASLR Unmodified 951.50255 0.50254598 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 28.899 27.344 2 0.012552 10568 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 74.929 60.153 22152000 0 0 0 1487600 2039700 2423500 0 0 0 5059400 0 3799100 0 0 0 1376200 0 0 0 0 0 3140600 2826300 0 5773 1631 5625 107136;107137;107138;107139;107140;107141;107142;107143 65432 65432 1 EYVHDIPVYLIVHDNPGLLGSGAHLR Unmodified 2883.5032 0.50316169 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 45.158 43.743 3;4;5 9.4226E-31 21763 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 188.3 187.42 2202100000 130880000 130280000 114810000 0 0 0 262810000 274250000 295210000 0 0 0 157380000 173200000 184240000 0 0 0 169790000 162510000 146720000 0 0 0 5774 285 5626 107144;107145;107146;107147;107148;107149;107150;107151;107152;107153;107154;107155;107156;107157;107158;107159;107160;107161;107162;107163;107164;107165;107166;107167;107168;107169;107170;107171;107172;107173;107174;107175;107176;107177;107178;107179 65433;65434;65435;65436;65437;65438;65439;65440;65441;65442;65443;65444;65445;65446;65447;65448;65449;65450;65451;65452;65453;65454;65455;65456;65457;65458;65459;65460;65461;65462 65435 30 EYVHTPADLFK Unmodified 1318.6558 0.65575216 1102 P15042 ligA DNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.328 31.261 3 0.011099 14697 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 46.955 44.088 150440000 7984500 8087200 10214000 0 0 0 10118000 10855000 12144000 0 0 0 12182000 10324000 10392000 3464200 2864300 3449100 16966000 14588000 16804000 0 0 0 5775 1102 5627 107180;107181;107182;107183;107184;107185;107186;107187;107188;107189;107190;107191;107192;107193;107194 65463;65464;65465;65466;65467;65468;65469;65470;65471;65472;65473;65474;65475 65469 13 EYWTEYFQIMK Unmodified 1536.6959 0.69590241 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.554 52.114 2 2.4862E-07 25487 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 162.49 160.55 610490000 82808000 79299000 72469000 0 0 0 45633000 45436000 53793000 0 0 0 30104000 28976000 32073000 0 0 0 63426000 43843000 32626000 0 0 0 5776 1872 5628 107195;107196;107197;107198;107199;107200;107201;107202;107203;107204;107205;107206 65476;65477;65478;65479;65480;65481;65482;65483;65484;65485;65486;65487 65480 12 EYYLNEQMK Unmodified 1216.5434 0.54342452 536 P0A9M0 lon Lon protease yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.266 23.385 2 5.653E-05 7153 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 147.34 134.71 207230000 0 0 0 1824500 2076300 2535000 0 0 0 18547000 17790000 18429000 0 0 0 50267000 32859000 31257000 0 0 0 9507800 11107000 11029000 5777 536 5629 107207;107208;107209;107210;107211;107212;107213;107214;107215;107216;107217;107218 65488;65489;65490 65488 3 FAAACEHFVSR Unmodified 1293.5924 0.5924404 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 1 1 1 1 1 1 17.1 17.827 2;3 3.1172E-07 6357 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.96 142.81 1970400000 662870000 671560000 595160000 4163400 2199600 3365000 3440300 0 3495000 0 0 0 1983000 0 0 0 0 0 6879400 7224400 8065300 0 0 0 5778 1919 5630 107219;107220;107221;107222;107223;107224;107225;107226;107227;107228;107229;107230;107231;107232;107233;107234;107235 65491;65492;65493;65494;65495;65496 65493 6 FAAAGAAIR Unmodified 846.47119 0.47118627 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.289 17.691 2 0.00010107 5367 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 135.87 114.32 931650000 29659000 32134000 29870000 0 0 0 133920000 114590000 111750000 63922000 55324000 51319000 0 34706000 33876000 5368100 3571700 3041500 55459000 64111000 58848000 18458000 16233000 15484000 5779 122 5631 107236;107237;107238;107239;107240;107241;107242;107243;107244;107245;107246;107247;107248;107249;107250;107251;107252;107253;107254;107255 65497;65498;65499;65500;65501;65502;65503;65504;65505;65506;65507;65508 65497 9 FAACNLDR Unmodified 965.4389 0.43889987 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 16.657 17.333 2 0.00081525 6199 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.99 117.63 730420000 122290000 106130000 105700000 0 0 0 68015000 67710000 57667000 1163800 0 0 32460000 30259000 29013000 0 0 0 34303000 39147000 36555000 0 0 0 5780 218 5632 107256;107257;107258;107259;107260;107261;107262;107263;107264;107265;107266;107267;107268 65509;65510;65511;65512;65513;65514;65515;65516 65511 8 FAAEIVDISR Unmodified 1119.5924 0.59242362 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.175 33.718 2 1.41E-07 15531 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 178.94 147.71 790460000 86259000 79879000 68135000 1685900 1385000 1810200 59402000 56313000 60597000 0 0 0 46034000 51324000 41983000 999420 0 0 71479000 81982000 78335000 0 1665300 1188200 5781 1348 5633 107269;107270;107271;107272;107273;107274;107275;107276;107277;107278;107279;107280;107281;107282;107283;107284;107285;107286 65517;65518;65519;65520;65521;65522;65523;65524;65525;65526;65527;65528 65526 12 FAAEQPENGK Unmodified 1089.5091 0.50908792 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.236 12.604 2 6.2068E-09 2811 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 190.51 189.88 131000000 0 0 0 0 0 0 9177500 9189400 6803000 7445500 7758200 7124600 0 0 0 0 1303600 1217700 13043000 0 0 24824000 21253000 21866000 5782 205 5634 107287;107288;107289;107290;107291;107292;107293;107294;107295;107296;107297;107298 65529;65530;65531;65532;65533;65534 65533 6 FAAEQPENGKNHPR Unmodified 1593.7648 0.76480211 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 10.904 11.173 3 3.4262E-06 2167 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 90.926 86.866 40970000 0 0 0 0 0 0 0 0 0 0 0 4735100 0 0 0 0 0 0 0 0 0 13814000 13065000 9355600 5783 205 5635 107299;107300;107301;107302 65535;65536;65537 65535 3 FAALAGAIDEEK Unmodified 1233.6241 0.62411768 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.009 29.613 2 5.7031E-06 13934 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.23 129.02 2154000000 204500000 192810000 196220000 733590 343110 503000 174460000 163870000 162860000 0 0 0 168110000 164090000 161700000 0 0 0 193680000 181170000 188940000 0 0 0 5784 715 5636 107303;107304;107305;107306;107307;107308;107309;107310;107311;107312;107313;107314;107315;107316;107317 65538;65539;65540;65541;65542;65543;65544;65545;65546;65547;65548;65549 65541 12 FAALAGAIDEEKVVLESLGSIK Unmodified 2259.2362 0.23621411 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.594 53.132 3 1.5341E-10 25946 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 139.02 134.76 283280000 29468000 18790000 23554000 0 0 0 21201000 15417000 15506000 6539100 0 2729500 23235000 20869000 20527000 0 0 0 32580000 27848000 25013000 0 0 0 5785 715 5637 107318;107319;107320;107321;107322;107323;107324;107325;107326;107327;107328;107329;107330;107331 65550;65551;65552 65551 3 FAALEAAGVK Unmodified 975.53893 0.53893149 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.603 25.514 2 0.00027586 11259 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.28 103.41 8922300000 1072500000 1042900000 902540000 3359300 2959600 3022800 419980000 438630000 431300000 3489800 2159000 2419200 484670000 451040000 441870000 2129800 935230 1202400 1099500000 1140100000 971260000 2186200 0 2198600 5786 1013 5638 107332;107333;107334;107335;107336;107337;107338;107339;107340;107341;107342;107343;107344;107345;107346;107347;107348;107349;107350;107351;107352;107353;107354 65553;65554;65555;65556;65557;65558;65559;65560;65561;65562;65563;65564;65565;65566;65567;65568;65569;65570;65571;65572;65573 65568 21 FAALIAHAQEVVLYDHPLEMDLTAR Unmodified 2822.4425 0.44253527 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 2 2 2 2 2 1 1 2 1 50.498 49.1 3;4 7.0733E-07 23133 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 100.94 98.804 438210000 28799000 49428000 31625000 0 0 0 45421000 35361000 44021000 0 0 0 39074000 39306000 30949000 0 0 0 25551000 35026000 33656000 0 0 0 5787 1085 5639 107355;107356;107357;107358;107359;107360;107361;107362;107363;107364;107365;107366;107367;107368;107369;107370;107371;107372;107373 65574;65575;65576;65577;65578;65579;65580;65581 65579 4 FAALLESNK Unmodified 991.53385 0.53384611 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 25.511 24.606 2 0.00061972 11059 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.57 86.837 252610000 88535000 83324000 80754000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5788 1835 5640 107374;107375;107376 65582;65583 65582 2 FAALTAQNFISDLLVK Unmodified 1749.9665 0.96652161 983 P0AG40 ribF Riboflavin biosynthesis protein RibF;Riboflavin kinase;FMN adenylyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.218 53.745 2 3.2407E-08 26458 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.87 106.6 266850000 27753000 26320000 27204000 0 0 0 16670000 16891000 14384000 0 0 0 18121000 19925000 18858000 0 0 0 25037000 25803000 29888000 0 0 0 5789 983 5641 107377;107378;107379;107380;107381;107382;107383;107384;107385;107386;107387;107388 65584 65584 1 FAAQAVMGSAK Unmodified 1079.5434 0.54336494 535 P0A9L8 proC Pyrroline-5-carboxylate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 21.334 21.412 2 1.6768E-14 8900 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 173.39 156.03 1511600000 301820000 265870000 216170000 1678900 2298400 1654900 5276500 105780000 2892000 2886600 2310400 2576500 100820000 97850000 95397000 0 0 0 105370000 104410000 95206000 0 1385000 0 5790 535 5642 107389;107390;107391;107392;107393;107394;107395;107396;107397;107398;107399;107400;107401;107402;107403;107404;107405;107406;107407;107408;107409 65585;65586;65587;65588;65589;65590;65591;65592;65593;65594;65595;65596;65597;65598;65599;65600 65588 15 FAASSDVFK Unmodified 970.476 0.47599688 1104 P15067 glgX Glycogen debranching enzyme yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.685 23.688 2 0.0068604 10859 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.423 61.27 132980000 14839000 16988000 14635000 0 0 0 14297000 13584000 12322000 0 0 0 6801100 6977600 5804700 0 0 0 9479200 8583300 8669700 0 0 0 5791 1104 5643 107410;107411;107412;107413;107414;107415;107416;107417;107418;107419;107420;107421 65601;65602;65603 65601 3 FAAYFQQGDMESNGK Unmodified 1691.725 0.72497071 19 CON__Q3ZBD7 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.091 29.735 2 2.8207E-11 13613 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 158.79 158.16 2286000000 212030000 203050000 179150000 0 0 0 290850000 284870000 281020000 0 0 0 127950000 135870000 125100000 0 0 0 148390000 154040000 143710000 0 0 0 + 5792 19 5644 107422;107423;107424;107425;107426;107427;107428;107429;107430;107431;107432;107433;107434;107435;107436;107437;107438;107439;107440;107441;107442;107443;107444;107445 65604;65605;65606;65607;65608;65609;65610;65611;65612;65613;65614;65615;65616;65617;65618;65619;65620;65621;65622;65623;65624;65625;65626;65627;65628;65629;65630 65616 27 FAAYFQQGNMESNGK Unmodified 1690.741 0.74095513 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 2 28.796 27.511 2 1.3025E-35 12985 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 259.08 259.08 600830000 71463000 69952000 59911000 0 0 0 60106000 71973000 57004000 0 506940 0 32494000 31374000 28173000 0 0 0 36294000 40754000 40829000 0 0 0 5793 277 5645 107446;107447;107448;107449;107450;107451;107452;107453;107454;107455;107456;107457;107458;107459;107460 65631;65632;65633;65634;65635;65636;65637;65638;65639;65640;65641;65642 65632 12 FADEQGVPR Unmodified 1017.488 0.48795855 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 15.679 16.454 2 0.0008931 5723 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.523 81.559 14600000 4100400 3429000 3829500 0 0 0 0 0 0 0 0 0 3241300 0 0 0 0 0 0 0 0 0 0 0 5794 162 5646 107461;107462;107463;107464 65643 65643 1 FADFATQDAPTEVWGTHFTAR Unmodified 2367.092 0.09200949 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.74 42.225 3 6.2588E-07 20430 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 99.343 97.455 286200000 31320000 29860000 28573000 0 0 0 25393000 27007000 19274000 0 0 0 20781000 15702000 14430000 0 0 0 22383000 25009000 26465000 0 0 0 5795 1784 5647 107465;107466;107467;107468;107469;107470;107471;107472;107473;107474;107475;107476 65644;65645;65646;65647;65648;65649 65649 6 FADGTPVTAEAVK Unmodified 1304.6612 0.66123147 1820 P76128 ddpA Probable D,D-dipeptide-binding periplasmic protein DdpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 23.428 22.866 2 5.3108E-05 9865 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.866 83.908 109310000 37718000 39836000 26844000 0 0 0 0 0 0 0 0 0 2125500 0 0 0 0 0 2782500 0 0 0 0 0 5796 1820 5648 107477;107478;107479;107480;107481 65650;65651;65652 65650 3 FADIVNANINALLEK Unmodified 1643.8883 0.88827129 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 2 2 2 2 2 2 51.852 50.607 2;3 6.1887E-07 18274 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 113.4 108.85 1158700000 81427000 93754000 80520000 63764000 66203000 56957000 83827000 57312000 66554000 41596000 27508000 38856000 41997000 34749000 41800000 0 2298100 3447600 58039000 56937000 61235000 31245000 33652000 35007000 5797 956 5649 107482;107483;107484;107485;107486;107487;107488;107489;107490;107491;107492;107493;107494;107495;107496;107497;107498;107499;107500;107501;107502;107503;107504;107505;107506;107507;107508;107509;107510;107511;107512;107513;107514;107515;107516;107517;107518;107519;107520;107521;107522;107523;107524 65653;65654;65655;65656;65657;65658;65659;65660;65661;65662;65663;65664;65665;65666;65667;65668;65669;65670;65671;65672;65673;65674;65675;65676;65677;65678;65679;65680;65681 65673 29 FADIVNANINALLEKAEDPQK Unmodified 2312.2012 0.20122559 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 51.879 50.931 3 2.7783E-07 18348 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 106.73 103.09 41071000 0 0 0 8044200 9191900 9899600 0 0 0 3392900 0 0 0 0 0 0 3856200 2943800 0 0 0 3742700 0 0 5798 956 5650 107525;107526;107527;107528;107529;107530;107531 65682;65683;65684 65684 3 FADLQTALTK Unmodified 1106.5972 0.59717465 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.515 30.863 2 0.00037546 14887 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.15 94.918 398430000 68837000 56022000 55288000 0 0 0 56482000 50663000 49247000 2066100 2611700 2015800 24073000 0 0 0 0 0 16226000 14895000 0 0 0 0 5799 427 5651 107532;107533;107534;107535;107536;107537;107538;107539;107540;107541;107542;107543 65685;65686;65687;65688;65689;65690;65691;65692 65685 3 FADPDWSQR Unmodified 1120.4938 0.49377221 1881 P77148 ydhS Uncharacterized protein YdhS yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 25.03 23.919 2 0.00056384 10544 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.01 103.07 100830000 16473000 21945000 25182000 0 0 0 12754000 12839000 11638000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5800 1881 5652 107544;107545;107546;107547;107548;107549 65693;65694;65695 65695 1 FADSESLFR Unmodified 1070.5033 0.50327426 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 32.293 30.941 2 2.9813E-06 14486 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.41 163.45 450940000 141280000 136890000 114420000 326690 0 0 4432300 5336000 4381900 0 0 0 6577200 5201800 6826400 0 0 0 8532900 8873500 7855400 0 0 0 5801 1412 5653 107550;107551;107552;107553;107554;107555;107556;107557;107558;107559;107560;107561;107562 65696;65697 65697 2 FADVACAGPLLAAELDALGK Unmodified 2001.0241 0.024112846 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 54.974 53.501 2;3 2.8048E-11 26520 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 153.7 146.13 23580000000 1949700000 1870600000 1954000000 5229100 7400000 5649500 2656100000 2641700000 2385200000 8009900 8173600 5636800 1548100000 1559100000 1534100000 0 0 0 1889400000 1738500000 1813500000 0 0 0 5802 321 5654 107563;107564;107565;107566;107567;107568;107569;107570;107571;107572;107573;107574;107575;107576;107577;107578;107579;107580;107581;107582;107583;107584;107585;107586;107587;107588;107589;107590;107591;107592;107593;107594;107595 65698;65699;65700;65701;65702;65703;65704;65705;65706;65707;65708;65709;65710;65711;65712;65713;65714;65715;65716 65701 17 FADVLEK Unmodified 820.43307 0.43306943 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.771 22.241 2 0.0079027 9539 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.369 42.603 461660000 48631000 45618000 40375000 0 0 0 29384000 38239000 38689000 0 0 0 33555000 30116000 24002000 0 0 0 40695000 44189000 48171000 0 0 0 5803 232 5655 107596;107597;107598;107599;107600;107601;107602;107603;107604;107605;107606;107607 65717;65718 65717 2 FADWPCDLK Unmodified 1150.5117 0.51173046 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.3 34.625 2 0.00034096 16552 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.28 109.71 162280000 15087000 16492000 14323000 1454800 1633500 1486600 12894000 10874000 8960700 5039000 5809300 4031200 7944000 6380900 7773800 1303300 0 0 11518000 13402000 10564000 0 2591200 2721600 5804 1083 5656 107608;107609;107610;107611;107612;107613;107614;107615;107616;107617;107618;107619;107620;107621;107622;107623;107624;107625;107626;107627;107628 65719;65720;65721;65722;65723;65724;65725;65726;65727;65728 65723 10 FADYDEAR Unmodified 985.41412 0.4141249 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.782 16.576 2 9.412E-05 5671 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 162.31 158.17 3060200000 343900000 363760000 295830000 1473600 0 1063900 266180000 264840000 241810000 0 0 0 191120000 167190000 155230000 0 0 0 278320000 259860000 228700000 0 907290 0 5805 512 5657 107629;107630;107631;107632;107633;107634;107635;107636;107637;107638;107639;107640;107641;107642;107643 65729;65730;65731;65732;65733;65734;65735;65736;65737;65738;65739;65740 65733 12 FAEADAHYHSAPPSR Unmodified 1654.7488 0.7488177 157 P07117 putP Sodium/proline symporter yes yes 0 0 0 By MS/MS 1 11.915 12.919 3 0.005622 2737 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 54.501 50.399 5770300 0 0 0 5770300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5806 157 5658 107644 65741 65741 1 FAEDAALLAK Unmodified 1047.5601 0.56006086 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 29.272 27.836 2 0.00025218 13140 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.318 76.542 147540000 0 0 94807000 473830 0 0 0 52257000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5807 1586 5659 107645;107646;107647;107648;107649 65742;65743;65744 65744 3 FAEGILLTLIEDGPK Unmodified 1614.8869 0.88687431 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 2 1 2 2 2 1 55.443 53.97 2;3 6.2375E-24 26565 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 210.91 195.28 573360000 33241000 28192000 34229000 0 0 0 61550000 52027000 55125000 0 0 0 64372000 54988000 57669000 0 0 0 47769000 41452000 42748000 0 0 0 5808 1959 5660 107650;107651;107652;107653;107654;107655;107656;107657;107658;107659;107660;107661;107662;107663;107664;107665;107666;107667;107668;107669 65745;65746;65747;65748;65749;65750;65751;65752;65753;65754;65755;65756;65757;65758 65753 14 FAEGLETVGDNFLR Unmodified 1566.7678 0.7678218 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 46.799 45.382 2 2.3036E-14 22389 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 223.78 222.37 746500000 0 67288000 0 0 0 0 74335000 64892000 77036000 0 0 0 70854000 61546000 59546000 0 0 0 93776000 95420000 81804000 0 0 0 5809 97 5661 107670;107671;107672;107673;107674;107675;107676;107677;107678;107679 65759;65760;65761;65762;65763;65764;65765 65761 7 FAEHHQTGNK Unmodified 1167.5421 0.54211939 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 1 5.1665 6.0027 2;3 1.9844E-12 878 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 202.2 186.06 1607900000 173860000 192190000 156080000 0 0 0 208320000 210960000 190180000 0 0 0 76644000 67119000 65836000 0 0 0 88991000 91216000 86520000 0 0 0 5810 63 5662 107680;107681;107682;107683;107684;107685;107686;107687;107688;107689;107690;107691;107692;107693;107694;107695;107696;107697 65766;65767;65768;65769;65770;65771;65772;65773;65774;65775;65776;65777;65778;65779;65780;65781;65782;65783 65766 18 FAENAYFIK Unmodified 1101.5495 0.54949617 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 1 2 2 2 3 1 1 2 2 2 1 1 1 32.159 30.84 2 0.00046076 14742 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.52 113.12 18721000000 3171800000 2941200000 2895100000 12124000 15268000 14771000 1587000000 1457200000 1518700000 0 0 0 872810000 853230000 817780000 3511200 0 5951700 919060000 799070000 819440000 6552000 4598100 6194400 5811 397 5663 107698;107699;107700;107701;107702;107703;107704;107705;107706;107707;107708;107709;107710;107711;107712;107713;107714;107715;107716;107717;107718;107719;107720;107721;107722;107723;107724;107725;107726;107727;107728;107729 65784;65785;65786;65787;65788;65789;65790;65791;65792;65793;65794;65795;65796;65797;65798;65799;65800;65801;65802;65803;65804 65785 18 FAEVVFER Unmodified 995.50763 0.50763136 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.908 30.568 2 0.00022739 13679 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 151.27 137.6 1222200000 81627000 86661000 81024000 0 0 0 118280000 113240000 108760000 0 0 0 109670000 97103000 96794000 0 0 0 106620000 106720000 115640000 0 0 0 5812 1956 5664 107730;107731;107732;107733;107734;107735;107736;107737;107738;107739;107740;107741 65805;65806;65807;65808;65809;65810;65811;65812;65813;65814;65815 65815 11 FAGANDR Unmodified 749.34565 0.34565141 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 10.695 11.508 2 0.0022218 2778 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.11 108.7 698600000 165450000 128360000 150050000 0 0 1122300 0 0 0 0 0 0 17713000 16119000 14731000 0 0 0 78109000 62574000 59957000 0 4423000 0 5813 65 5665 107742;107743;107744;107745;107746;107747;107748;107749;107750;107751;107752 65816;65817;65818;65819;65820;65821 65819 6 FAGAVAPQYLNITTGGQH Unmodified 1843.9217 0.92169668 907 P0AF26 narJ Nitrate reductase molybdenum cofactor assembly chaperone NarJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 41.184 39.221 2 1.9083E-13 19133 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.63 136.72 61559000 3372200 0 0 0 0 0 5358600 6457100 6457000 2527500 0 2655900 3383800 4495100 0 0 0 0 9720200 9546300 0 2610500 2340400 2634600 5814 907 5666 107753;107754;107755;107756;107757;107758;107759;107760;107761;107762;107763;107764;107765 65822;65823;65824 65824 3 FAGDDLPSNPVACALAIADK Unmodified 2043.9935 0.993541 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 1 1 1 2 1 2 1 2 54.066 52.658 2;3 1.556E-06 25628 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 123.76 121.78 1134800000 118220000 104740000 114840000 2557000 0 2273000 126580000 106130000 93427000 13748000 12393000 5467000 29091000 26889000 84095000 2165400 0 0 124250000 36647000 131320000 0 0 0 5815 62 5667 107766;107767;107768;107769;107770;107771;107772;107773;107774;107775;107776;107777;107778;107779;107780;107781;107782;107783;107784;107785;107786;107787;107788;107789;107790;107791;107792;107793;107794 65825;65826;65827;65828;65829;65830;65831;65832;65833;65834;65835;65836;65837;65838;65839;65840;65841;65842;65843 65833 19 FAGDLFHTR Unmodified 1062.5247 0.52467841 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.375 24.291 2;3 3.7348E-06 10872 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 175.38 164.96 745280000 47355000 53049000 52557000 0 0 0 81107000 85397000 74021000 0 0 0 66246000 59713000 54171000 0 0 0 57263000 55832000 58567000 0 0 0 5816 441 5668 107795;107796;107797;107798;107799;107800;107801;107802;107803;107804;107805;107806;107807;107808;107809;107810;107811;107812;107813;107814;107815;107816;107817;107818 65844;65845;65846;65847;65848;65849;65850;65851;65852;65853;65854;65855;65856;65857;65858;65859;65860;65861;65862 65850 19 FAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVR Unmodified 3898.9741 0.97413277 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 3 3 3 2 2 2 3 53.948 52.5 3;4;5 8.851E-56 26006 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 228.98 227.55 6143100000 470020000 460500000 384720000 0 0 0 646200000 599060000 537290000 0 0 0 502030000 492240000 472930000 0 0 0 517280000 514400000 546410000 0 0 0 5817 441 5669 107819;107820;107821;107822;107823;107824;107825;107826;107827;107828;107829;107830;107831;107832;107833;107834;107835;107836;107837;107838;107839;107840;107841;107842;107843;107844;107845;107846;107847;107848;107849;107850 65863;65864;65865;65866;65867;65868;65869;65870;65871;65872;65873;65874;65875;65876;65877;65878;65879;65880;65881;65882;65883;65884;65885;65886;65887 65876 25 FAGENTIYGSIR Unmodified 1326.6568 0.65681479 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.811 29.346 2 7.3889E-17 14138 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 211.27 202.85 1585600000 149280000 135540000 156110000 856100 1591000 1652300 131020000 118980000 118050000 0 0 0 113890000 104380000 93458000 0 0 0 149930000 154560000 147970000 2591900 2131900 3579400 5818 1143 5670 107851;107852;107853;107854;107855;107856;107857;107858;107859;107860;107861;107862;107863;107864;107865;107866;107867;107868 65888;65889;65890;65891;65892;65893;65894;65895;65896;65897;65898;65899 65888 11 FAGEQLVK Unmodified 890.48617 0.48616764 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 1 1 1 2 1 2 21.13 21.036 2 0.0083814 6198 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 81.784 42.566 518670000 0 254660000 0 8098800 8902900 8321900 0 69997000 67358000 15871000 27478000 24846000 0 0 0 3954700 3291300 4138500 0 0 0 6715000 5823700 9215100 5819 33 5671 107869;107870;107871;107872;107873;107874;107875;107876;107877;107878;107879;107880;107881;107882;107883;107884;107885;107886;107887 65900;65901;65902;65903;65904;65905;65906;65907;65908;65909;65910;65911 65911 12 FAGKPMYR Unmodified 968.49021 0.49020716 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 12.634 13.032 2 0.046823 3142 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 84.359 82.174 11697000 0 0 0 0 1396500 0 0 0 0 2700500 2831200 1675900 0 0 0 0 0 0 0 0 0 1545700 1547200 0 5820 1167 5672 107888;107889;107890;107891;107892;107893 65912 65912 0 FAGLISK Unmodified 734.43268 0.4326755 1515 P39199 prmB 50S ribosomal protein L3 glutamine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 3 3 3 1 2 2 2 2 1 1 1 2 2 2 1 1 1 22.328 21.911 1;2 0.0041051 9434 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.2 54.164 1341200000 117120000 108150000 91764000 5931700 5306100 6283100 116700000 118450000 106350000 6890700 11380000 9632400 92892000 94355000 71337000 1737200 0 1855400 115930000 125090000 107430000 9066600 8548100 9032200 5821 1515 5673 107894;107895;107896;107897;107898;107899;107900;107901;107902;107903;107904;107905;107906;107907;107908;107909;107910;107911;107912;107913;107914;107915;107916;107917;107918;107919;107920;107921;107922;107923;107924;107925;107926;107927;107928;107929;107930;107931 65913;65914;65915;65916;65917;65918;65919;65920;65921;65922;65923;65924;65925;65926;65927;65928;65929;65930;65931;65932;65933;65934;65935 65916 19 FAGNVLLIVNVASK Unmodified 1443.8449 0.84494991 123 P06610 btuE Vitamin B12 transport periplasmic protein BtuE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.205 48.799 2 0.00017367 24064 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 84.289 70.936 106580000 15726000 12865000 10797000 0 0 0 13478000 10586000 10607000 0 0 0 3493700 4322200 4839000 0 0 0 7897500 6380200 5591600 0 0 0 5822 123 5674 107932;107933;107934;107935;107936;107937;107938;107939;107940;107941;107942;107943 65936;65937 65937 1 FAGSGGGLTINFDAMLLGER Unmodified 2024.999 0.99896073 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 2 2 2 54.731 53.317 2;3 3.6703E-25 21358 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 242.07 228.39 184920000 8075400 7397900 6622500 0 0 0 0 7387900 4793200 0 0 0 7604900 5104700 7187200 0 0 0 10513000 14117000 8940200 34742000 31774000 30664000 5823 1433 5675 107944;107945;107946;107947;107948;107949;107950;107951;107952;107953;107954;107955;107956;107957;107958;107959;107960;107961 65938;65939;65940;65941;65942;65943 65940 3 FAGSPLGHEFTSLVLALLWTGGHPSK Unmodified 2721.4279 0.42787148 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 1 1 1 55.34 53.887 3;4 2.3386E-16 26721 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 155.25 152.78 3805100000 230090000 216720000 243200000 4588100 6296500 3889700 484650000 444570000 474020000 5737400 5433400 6759100 230370000 225270000 205120000 0 0 0 396500000 313290000 300370000 0 4099300 4169400 5824 1437 5676 107962;107963;107964;107965;107966;107967;107968;107969;107970;107971;107972;107973;107974;107975;107976;107977;107978;107979;107980;107981;107982;107983;107984;107985;107986;107987;107988;107989;107990;107991;107992;107993;107994 65944;65945;65946;65947;65948;65949;65950;65951;65952;65953;65954;65955;65956;65957;65958;65959;65960 65949 17 FAGTETER Unmodified 909.41921 0.41921028 1803 P76008 ldcA Murein tetrapeptide carboxypeptidase yes yes 0 0 0 By MS/MS 1 11.33 12.284 2 0.0064075 3053 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 79.469 71.778 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5825 1803 5677 107995 65961 65961 1 FAGTGDSHIAFASPDENR Unmodified 1890.8497 0.84965395 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 25.411 24.272 2 1.7663E-09 10784 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.76 118.44 44391000 9339300 6014300 7737200 0 0 0 4492400 4363100 4834700 0 0 0 0 0 3514600 0 0 0 0 0 4095300 0 0 0 5826 184 5678 107996;107997;107998;107999;108000;108001;108002;108003 65962;65963 65963 1 FAGYWQPGLPK Unmodified 1262.6448 0.64479354 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 38.332 36.693 2 0.00056903 17719 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.181 32.097 170990000 0 49781000 0 0 0 0 32613000 0 0 0 0 0 0 44145000 44451000 0 0 0 0 0 0 0 0 0 5827 1774 5679 108004;108005;108006;108007 65964;65965;65966;65967 65965 3 FAHAAAAIAVTR Unmodified 1197.6618 0.66184059 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 16.872 17.688 2 0.00041936 6561 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.29 78.395 76522000 0 1854900 0 0 0 0 9386200 0 0 0 0 0 9361800 9238700 7836500 0 0 0 14133000 14741000 9969400 0 0 0 5828 528 5680 108008;108009;108010;108011;108012;108013;108014;108015 65968;65969 65968 2 FAHFDENFVER Unmodified 1409.6364 0.6364137 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.848 27.542 3 0.00011543 12716 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 78.488 75.538 257080000 7522500 8266800 7571500 911540 1056500 849500 23354000 19177000 15689000 17886000 16597000 16363000 12843000 12961000 13971000 2375400 2009000 2314800 18620000 21546000 18960000 5865100 5515200 4851400 5829 143 5681 108016;108017;108018;108019;108020;108021;108022;108023;108024;108025;108026;108027;108028;108029;108030;108031;108032;108033;108034;108035;108036;108037;108038;108039 65970;65971;65972;65973;65974;65975;65976;65977;65978 65974 9 FAHSNGQLNDTLTEVADGTLR Unmodified 2258.0927 0.092737771 897 P0AEY5 mdaB Modulator of drug activity B yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 37.549 36.082 3 9.2417E-07 16709 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 93.255 91.582 120590000 23411000 22597000 19480000 0 0 0 0 0 0 0 0 0 17463000 14800000 18317000 0 0 0 0 0 4524500 0 0 0 5830 897 5682 108040;108041;108042;108043;108044;108045;108046 65979;65980 65980 2 FAIDQEK Unmodified 849.42323 0.42323303 402 P0A870 talB Transaldolase B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 16.425 17.206 2 0.0012711 6073 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.96 127.2 5594600000 455700000 456320000 389720000 0 0 0 0 604900000 596860000 0 0 0 531120000 515930000 417430000 0 0 0 547130000 546050000 533470000 0 0 0 5831 402 5683 108047;108048;108049;108050;108051;108052;108053;108054;108055;108056;108057 65981;65982;65983;65984 65981 4 FAIDQEKLEK Unmodified 1219.6449 0.64485312 402 P0A870 talB Transaldolase B yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.235 20.538 3 8.9433E-05 7721 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 105.98 88.142 848800000 51817000 54767000 49791000 2858600 2837100 2271900 76681000 79712000 78944000 2035000 0 0 70428000 62347000 51226000 0 0 0 87661000 94220000 80125000 0 1080800 0 5832 402 5684 108058;108059;108060;108061;108062;108063;108064;108065;108066;108067;108068;108069;108070;108071;108072;108073;108074 65985;65986;65987;65988;65989;65990;65991;65992;65993;65994;65995;65996;65997 65995 13 FAIIDAVNGEEYLSGLAECFHLPEAR Unmodified 2920.4065 0.40654369 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 2 3 1 1 3 3 3 2 2 3 1 1 55.127 53.676 2;3;4 2.4174E-50 25642 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 235.45 225.39 6160000000 382590000 367520000 353720000 0 0 2020400 404040000 389740000 434180000 4708800 0 2741100 692620000 642260000 645530000 0 0 0 632300000 614220000 584520000 0 3112900 4216000 5833 224 5685 108075;108076;108077;108078;108079;108080;108081;108082;108083;108084;108085;108086;108087;108088;108089;108090;108091;108092;108093;108094;108095;108096;108097;108098;108099;108100;108101;108102;108103;108104;108105;108106;108107;108108;108109;108110 65998;65999;66000;66001;66002;66003;66004;66005;66006;66007;66008;66009 66007 12 FAIQIPYALGIIATR Unmodified 1645.9556 0.955563 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.115 53.672 2 1.4447E-08 21860 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 143.79 141.47 189150000 0 0 0 8634000 4981700 0 0 0 0 51911000 45667000 49424000 0 0 0 0 0 0 0 0 0 8191400 9065200 11275000 5834 664 5686 108111;108112;108113;108114;108115;108116;108117;108118;108119 66010;66011;66012;66013 66011 4 FAIVAVGLR Unmodified 944.58074 0.58073672 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.988 38.674 2 4.0321E-05 17676 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 151.51 77.175 293730000 22523000 20127000 18497000 0 0 0 25669000 24184000 26964000 0 0 0 20628000 16975000 17590000 5611900 4237300 6746900 29684000 25784000 28508000 0 0 0 5835 186 5687 108120;108121;108122;108123;108124;108125;108126;108127;108128;108129;108130;108131;108132;108133;108134 66014;66015;66016;66017;66018;66019;66020;66021;66022;66023 66023 10 FALESISK Unmodified 893.48583 0.48583328 1907 P77454 glsA1 Glutaminase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.467 26.32 2 0.012962 11868 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 74.255 51.326 881760000 117750000 113080000 106040000 0 0 0 157540000 157550000 153120000 0 0 0 18830000 14983000 14788000 0 0 0 7985500 9554300 10540000 0 0 0 5836 1907 5688 108135;108136;108137;108138;108139;108140;108141;108142;108143;108144;108145;108146 66024;66025;66026;66027;66028 66027 3 FALFDDER Unmodified 1011.4662 0.46616048 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37.382 35.694 2 0.00017407 16466 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 154.35 138.91 5582800000 43309000 37814000 33884000 537620 0 0 37222000 38383000 38208000 733070000 725910000 712980000 34049000 33666000 40259000 512210000 613020000 610370000 60344000 52731000 55111000 392940000 376690000 400080000 5837 1616 5689 108147;108148;108149;108150;108151;108152;108153;108154;108155;108156;108157;108158;108159;108160;108161;108162;108163;108164;108165;108166;108167;108168;108169;108170;108171 66029;66030;66031;66032;66033;66034;66035;66036;66037;66038;66039;66040;66041;66042;66043;66044;66045;66046;66047;66048;66049;66050 66049 22 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFAR Unmodified 4065.8479 0.84794598 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 1 2 2 55.015 54.224 3;4;5 7.8869E-83 20619 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 271.68 271.68 6801700000 0 0 0 0 0 0 0 0 0 752810000 673140000 556470000 0 0 0 778900000 1424800000 1301400000 0 0 0 445060000 447740000 421340000 5838 1616 5690 108172;108173;108174;108175;108176;108177;108178;108179;108180;108181;108182;108183;108184;108185;108186;108187;108188;108189;108190;108191 66051;66052;66053;66054;66055;66056;66057;66058;66059;66060;66061;66062;66063;66064;66065;66066;66067;66068 66055 18 FALPDSILTK Unmodified 1103.6227 0.62266112 1891 P77279 fetA Probable iron export ATP-binding protein FetA yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 43.593 42.156 2 0.091075 20543 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 44.318 10.111 123780000 13783000 14504000 12425000 0 0 0 0 0 0 0 0 0 12756000 11535000 12651000 0 0 0 14645000 15818000 14606000 1054600 0 0 5839 1891 5691 108192;108193;108194;108195;108196;108197;108198;108199;108200;108201 66069;66070;66071;66072 66069 3 FALSILPHDLSINDYYR Unmodified 2036.0367 0.036726442 708 P0AC84 gloB Hydroxyacylglutathione hydrolase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.342 50.094 3 3.7532E-09 24668 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 125.89 121.28 625150000 109630000 100340000 88234000 0 0 0 59775000 67981000 56625000 0 0 0 21603000 19139000 21548000 0 0 0 30137000 25629000 24504000 0 0 0 5840 708 5692 108202;108203;108204;108205;108206;108207;108208;108209;108210;108211;108212;108213 66073;66074;66075;66076;66077;66078 66075 6 FALTHDDLPQLQHFGK Unmodified 1865.9424 0.94243213 1186 P21829 ybhA Pyridoxal phosphate phosphatase YbhA yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 33.946 32.707 4 0.051039 15608 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 36.592 35.447 43821000 14830000 15355000 13636000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5841 1186 5693 108214;108215;108216 66079;66080 66079 2 FALVKPK Unmodified 801.51126 0.51126017 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 15.145 15.912 2 0.049508 5379 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.398 68.398 530990000 118150000 98625000 81819000 0 0 285770 46689000 48935000 50809000 0 0 0 0 0 0 0 0 0 30247000 28425000 27005000 0 0 0 5842 218 5694 108217;108218;108219;108220;108221;108222;108223;108224;108225;108226 66081;66082;66083;66084;66085;66086 66085 6 FAMYPDWQPDADFIR Unmodified 1870.8349 0.83485551 436 P0A8J2 dnaT Primosomal protein 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.268 51.828 2 4.6038E-06 25495 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.82 99.331 95011000 9534400 9794000 9860400 0 0 0 7467600 6031300 7661400 0 0 0 5325300 7032900 4665100 0 0 0 9514800 9178900 8944600 0 0 0 5843 436 5695 108227;108228;108229;108230;108231;108232;108233;108234;108235;108236;108237;108238 66087;66088 66087 2 FANPQEGSVVFDDQIR Unmodified 1820.8693 0.86932676 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 1 2 2 2 1 37.351 35.556 2;3 1.1348E-18 17071 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 243.85 238.01 3853000000 217550000 216980000 190080000 0 0 0 379490000 368400000 366010000 0 0 1063000 279730000 294170000 282520000 0 0 0 475300000 443470000 337330000 859690 0 0 5844 92 5696 108239;108240;108241;108242;108243;108244;108245;108246;108247;108248;108249;108250;108251;108252;108253;108254;108255;108256;108257;108258 66089;66090;66091;66092;66093;66094;66095;66096;66097;66098;66099;66100;66101;66102;66103;66104;66105 66099 17 FANSLFVNNWDNR Unmodified 1595.7481 0.74808942 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 1 43.255 41.803 2;3 2.9498E-17 19410 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 234.72 222.14 949480000 116960000 114320000 93168000 0 0 0 10647000 9333700 10684000 0 0 0 124830000 125840000 123020000 0 0 0 9952000 201910000 8831000 0 0 0 5845 702 5697 108259;108260;108261;108262;108263;108264;108265;108266;108267;108268;108269;108270;108271;108272;108273;108274;108275;108276;108277 66106;66107;66108;66109;66110;66111;66112;66113;66114;66115;66116;66117;66118 66117 13 FANTLLELGIK Unmodified 1217.702 0.70197407 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 46.503 45.011 2 1.5697E-07 21736 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 169.09 158.86 2403200000 793150000 808450000 721490000 1898000 2392700 2644000 6382700 7491000 9238600 0 0 0 6363200 0 0 0 0 0 14059000 15178000 14477000 0 0 0 5846 1305 5698 108278;108279;108280;108281;108282;108283;108284;108285;108286;108287;108288;108289;108290 66119;66120;66121;66122;66123;66124;66125 66123 7 FAPALNVSEEEVTTGLDR Unmodified 1946.9585 0.9585357 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 42.38 40.752 2;3 1.5466E-36 19897 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 235.73 220.52 1227100000 440200000 396350000 375660000 3207400 2747300 2639400 0 0 0 0 0 0 0 0 0 0 0 0 0 6279800 0 0 0 0 5847 1919 5699 108291;108292;108293;108294;108295;108296;108297;108298;108299;108300;108301;108302;108303 66126;66127;66128;66129;66130;66131;66132;66133;66134 66130 9 FAPHLTR Unmodified 840.46062 0.46062159 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.797 14.141 2 0.12062 3574 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 50.127 35.545 136350000 12962000 16645000 17282000 1385800 0 0 0 0 3398500 2165600 1959000 2128600 0 0 0 48361000 13743000 12168000 0 0 0 1191600 1395900 1563200 5848 515 5700 108304;108305;108306;108307;108308;108309;108310;108311;108312;108313;108314;108315;108316;108317 66135 66135 1 FAPLNSWPDNVSLDK Unmodified 1701.8362 0.83623572 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 45.836 44.362 2;3 2.5253E-15 21560 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 196.24 186.8 2754700000 322130000 315300000 285850000 0 0 0 325740000 309020000 289040000 0 0 0 148700000 150520000 145090000 0 0 0 154800000 152080000 156480000 0 0 0 5849 1086 5701 108318;108319;108320;108321;108322;108323;108324;108325;108326;108327;108328;108329;108330;108331;108332;108333;108334;108335;108336;108337;108338;108339;108340 66136;66137;66138;66139;66140;66141;66142;66143;66144;66145;66146;66147;66148;66149 66144 14 FAPSLVVEDADIDEGMQR Unmodified 1990.9306 0.93060639 1150 P18335 argD Acetylornithine/succinyldiaminopimelate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 2 1 1 1 2 2 2 2 1 2 44.762 43.332 2;3 2.3517E-06 20992 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.54 128.87 124590000 22652000 22720000 11448000 0 0 0 0 5911700 4787100 0 0 0 10482000 7468100 7432300 0 0 0 13478000 5536300 12672000 0 0 0 5850 1150 5702 108341;108342;108343;108344;108345;108346;108347;108348;108349;108350;108351;108352;108353;108354;108355;108356;108357;108358 66150;66151;66152;66153;66154;66155 66151 2 FAPSPTGYLHVGGAR Unmodified 1528.7787 0.77866126 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 1 1 1 2 2 2 1 2 2 2 1 1 3 2 2 1 1 1 27.922 26.742 2;3 4.3926E-12 11553 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 200.71 185.08 5539500000 352010000 338330000 298980000 1678800 1470500 1803300 466850000 477760000 477680000 1773500 0 0 446760000 425090000 379720000 1357800 0 1125700 594430000 626670000 640390000 2137800 1687700 1761800 5851 92 5703 108359;108360;108361;108362;108363;108364;108365;108366;108367;108368;108369;108370;108371;108372;108373;108374;108375;108376;108377;108378;108379;108380;108381;108382;108383;108384;108385;108386;108387;108388;108389;108390;108391;108392;108393 66156;66157;66158;66159;66160;66161;66162;66163;66164;66165;66166;66167;66168;66169;66170;66171;66172;66173;66174;66175;66176;66177;66178;66179 66179 24 FAPYLAK Unmodified 808.44833 0.44832557 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.656 22.119 2 0.068585 9740 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 59.641 50.628 318330000 11314000 10422000 9403100 0 0 0 36718000 39167000 32545000 0 0 0 16152000 20068000 20586000 0 0 0 45125000 39171000 37658000 0 0 0 5852 51 5704 108394;108395;108396;108397;108398;108399;108400;108401;108402;108403;108404;108405 66180;66181;66182;66183 66181 4 FAQAIHAK Unmodified 884.48684 0.48683634 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 11.234 12.091 2 0.0031662 3164 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.407 87.282 9516300000 2448600000 2001100000 1939200000 0 10876000 0 511410000 585430000 572990000 0 0 0 219870000 195810000 207140000 0 0 0 284520000 268610000 270770000 0 0 0 5853 517 5705 108406;108407;108408;108409;108410;108411;108412;108413;108414;108415;108416;108417;108418;108419;108420;108421 66184;66185;66186;66187;66188;66189;66190;66191;66192;66193;66194;66195;66196;66197;66198 66193 15 FAQLPLANHPQITVVDGGDER Unmodified 2276.1549 0.1549441 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.866 36.128 3 9.1986E-11 17492 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.15 125.96 296930000 20093000 21141000 16334000 2839500 2405500 2782200 21377000 20511000 20467000 0 0 0 24921000 16244000 22644000 0 0 0 26530000 29895000 25150000 8297900 8177300 7117700 5854 1964 5706 108422;108423;108424;108425;108426;108427;108428;108429;108430;108431;108432;108433;108434;108435;108436;108437;108438;108439 66199;66200;66201;66202;66203;66204;66205;66206;66207;66208;66209;66210;66211;66212;66213;66214 66204 16 FAQLPLANHPQITVVDGGDERADSVLAGLK Unmodified 3130.6411 0.64111173 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 1 By MS/MS 1 45.663 43.775 4 0.024889 17286 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 44.811 39.437 13569000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13569000 0 5855 1964 5707 108440 66215 66215 0 FASFIDK Unmodified 826.4225 0.42250475 17;14;8;21;15 CON__P35908;CON__Q6NXH9;CON__Q7Z794;CON__P48668;CON__P02538;CON__P04259;CON__Q8VED5;CON__P05787;CON__Q3KNV1;CON__P08729;CON__Q9NSB2;CON__Q6ISB0;CON__P13647;CON__P19013;CON__Q7RTS7;CON__Q32MB2 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.48 25.34 2 0.004947 9579 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 101.69 81.809 266730000 0 0 0 11112000 10077000 9910400 0 0 0 28461000 24825000 19237000 0 0 0 13462000 8248300 9099600 0 0 0 45069000 41191000 46032000 + 5856 17;8;14;15;21 5708 108441;108442;108443;108444;108445;108446;108447;108448;108449;108450;108451;108452 66216;66217;66218;66219;66220;66221;66222;66223;66224;66225;66226;66227 66219 12 FASFIDKVR Unmodified 1081.592 0.59202969 17;14;8;21 CON__P35908;CON__Q6NXH9;CON__Q7Z794;CON__P48668;CON__P02538;CON__P04259;CON__Q8VED5;CON__P05787;CON__Q3KNV1;CON__P08729;CON__Q9NSB2;CON__Q6ISB0;CON__P13647;CON__Q7RTS7;CON__Q32MB2 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 25.83 24.742 3 0.002311 8120 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 76.679 66.898 38650000 0 0 0 3939100 4191600 3485000 0 0 0 3865800 3087200 3108700 0 0 0 3271300 3909800 3822000 0 0 0 2590900 3378700 0 + 5857 17;8;14;21 5709 108453;108454;108455;108456;108457;108458;108459;108460;108461;108462;108463 66228;66229;66230;66231;66232;66233;66234 66233 6 FASGSQAEQLAAVQQSATINQAWQTLR Unmodified 2903.4526 0.45258268 261 P0A6L9 hscB Co-chaperone protein HscB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.58 48.19 3 1.3351E-41 23445 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 221.04 211.32 282040000 24796000 23193000 19224000 0 0 0 18639000 18509000 16913000 0 0 0 28155000 22698000 23771000 0 0 0 28719000 31126000 26296000 0 0 0 5858 261 5710 108464;108465;108466;108467;108468;108469;108470;108471;108472;108473;108474;108475 66235;66236;66237;66238 66236 4 FASLDELK Unmodified 921.48075 0.48074791 983 P0AG40 ribF Riboflavin biosynthesis protein RibF;Riboflavin kinase;FMN adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.608 28.352 2 0.0039041 13191 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.142 42.772 222950000 21077000 20212000 16057000 0 0 0 16624000 14913000 16967000 0 0 0 16333000 16120000 14085000 0 0 0 21283000 26440000 22841000 0 0 0 5859 983 5711 108476;108477;108478;108479;108480;108481;108482;108483;108484;108485;108486;108487 66239;66240;66241;66242;66243;66244;66245 66239 7 FASSFYGPFR Unmodified 1177.5556 0.55564418 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 38.587 37.034 2 0.0001522 18450 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.73 103.69 599260000 84538000 0 55120000 0 1371700 0 0 0 0 0 0 0 61337000 63482000 59909000 0 0 0 95907000 99132000 78461000 0 0 0 5860 715 5712 108488;108489;108490;108491;108492;108493;108494;108495;108496;108497 66246;66247;66248;66249;66250;66251 66246 6 FASTHTDSSAQTVSLEDYVSR Unmodified 2300.0557 0.055683563 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 30.923 29.541 2;3 5.0125E-118 14224 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 477.34 474.5 3763100000 350580000 301300000 300130000 5727100 5388200 4419400 283670000 264810000 274870000 2214200 3842700 2803200 275190000 264370000 269670000 4388700 1899600 1898000 366730000 390140000 378680000 3541400 3042700 3801700 5861 295 5713 108498;108499;108500;108501;108502;108503;108504;108505;108506;108507;108508;108509;108510;108511;108512;108513;108514;108515;108516;108517;108518;108519;108520;108521;108522;108523;108524;108525;108526;108527;108528;108529;108530;108531;108532;108533 66252;66253;66254;66255;66256;66257;66258;66259;66260;66261;66262;66263;66264;66265;66266;66267;66268;66269;66270;66271;66272;66273;66274;66275;66276;66277 66253 26 FASVLGEIAADFAQDKK Unmodified 1808.9309 0.93086439 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 2 2 2 1 2 2 2 2 42.543 41.104 3 1.0687E-10 22953 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.22 138.85 1461500000 22499000 144890000 109410000 0 2918400 1089500 121580000 156150000 169260000 0 0 0 95129000 16070000 88650000 0 0 0 180340000 181290000 172180000 0 0 0 5862 1550 5714 108534;108535;108536;108537;108538;108539;108540;108541;108542;108543;108544;108545;108546;108547;108548;108549;108550;108551;108552;108553;108554;108555;108556;108557 66278;66279;66280;66281;66282;66283;66284;66285;66286;66287;66288;66289 66288 12 FATAGVDVPDSVFYTSAMATADFLR Unmodified 2651.2578 0.25775419 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.583 54.136 3 4.1739E-05 19979 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 73.389 70.627 136160000 13529000 0 0 18528000 16649000 15608000 9423300 7669400 7172700 0 0 0 13993000 9791800 11012000 0 0 0 12783000 0 0 0 0 0 5863 906 5715 108558;108559;108560;108561;108562;108563;108564;108565;108566;108567;108568 66290;66291;66292 66291 1 FATEASYPPFESIDANNQIVGFDVDLAQALCK Unmodified 3529.6712 0.67115081 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.408 53.925 3 0.00017509 26913 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 64.633 62.919 325980000 55403000 51002000 0 0 0 0 19815000 20848000 20274000 0 4558600 0 31084000 28967000 27953000 0 0 0 0 34839000 31239000 0 0 0 5864 1349 5716 108569;108570;108571;108572;108573;108574;108575;108576;108577;108578;108579 66293;66294 66293 2 FATEGMMQVLADEYQQR Unmodified 2015.9081 0.90809681 1382 P31808 yciK Uncharacterized oxidoreductase YciK yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.193 48.786 3 7.2168E-09 23704 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 117.31 114.71 144630000 19198000 17882000 16276000 0 0 0 13109000 8201400 7199100 0 0 0 12293000 11210000 10957000 0 0 0 8657900 10540000 9106100 0 0 0 5865 1382 5717 108580;108581;108582;108583;108584;108585;108586;108587;108588;108589;108590;108591 66295;66296;66297;66298;66299;66300;66301;66302;66303;66304 66301 10 FATHGGYLLQGK Unmodified 1290.6721 0.67207093 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 20.077 20.33 2;3 4.5283E-12 7782 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 225.87 217.82 8487300000 548390000 501640000 447830000 201580000 181580000 174010000 917850000 975610000 991250000 178180000 161780000 162390000 448220000 402400000 391200000 3196900 4869900 6239500 438340000 400910000 395360000 189790000 187070000 177630000 5866 548 5718 108592;108593;108594;108595;108596;108597;108598;108599;108600;108601;108602;108603;108604;108605;108606;108607;108608;108609;108610;108611;108612;108613;108614;108615;108616;108617;108618;108619;108620;108621;108622;108623;108624;108625;108626;108627;108628;108629;108630;108631;108632;108633;108634;108635;108636 66305;66306;66307;66308;66309;66310;66311;66312;66313;66314;66315;66316;66317;66318;66319;66320;66321;66322;66323;66324;66325;66326;66327;66328;66329;66330;66331;66332;66333;66334;66335;66336;66337;66338;66339;66340;66341 66334 37 FATLCHDLGK Unmodified 1160.5648 0.56482866 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.859 19.32 2 0.00019061 7328 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.13 106.98 60924000 7237700 6400300 9411700 0 0 0 6382300 6393600 0 0 0 0 4096800 4106200 3153200 1171800 560250 828350 3820400 3778200 3583400 0 0 0 5867 134 5719 108637;108638;108639;108640;108641;108642;108643;108644;108645;108646;108647;108648;108649;108650 66342;66343 66342 2 FATLSFDVQK Unmodified 1154.5972 0.59717465 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.858 35.156 2 0.00023126 13862 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 107.57 103.59 304480000 18149000 20650000 18950000 0 0 0 30510000 35693000 0 0 11293000 0 21287000 23818000 18465000 0 0 0 37633000 35629000 32403000 0 0 0 5868 1197 5720 108651;108652;108653;108654;108655;108656;108657;108658;108659;108660;108661;108662;108663;108664 66344;66345;66346 66345 3 FATMLAR Unmodified 808.42654 0.42654427 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.116 22.404 2 0.00027448 9156 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 160.17 118.05 613040000 50077000 48326000 46771000 0 0 0 51740000 50035000 49669000 0 0 0 60360000 56141000 60013000 0 0 0 44909000 43508000 50735000 0 0 759540 5869 1252 5721 108665;108666;108667;108668;108669;108670;108671;108672;108673;108674;108675;108676;108677 66347;66348 66348 2 FATMSDEDK Unmodified 1042.4277 0.42772606 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.233 15.016 2 3.5972E-05 4924 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 152.63 148.65 290660000 39172000 34759000 35377000 0 0 0 24826000 21981000 20612000 0 0 0 22085000 19701000 20420000 0 0 0 14339000 19056000 18331000 0 0 0 5870 1244 5722 108678;108679;108680;108681;108682;108683;108684;108685;108686;108687;108688;108689 66349;66350;66351;66352;66353;66354;66355;66356;66357;66358;66359;66360 66350 12 FATPEAK Unmodified 762.3912 0.39120462 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.664 13.532 2 0.0033765 3757 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 108.24 92.606 1255600000 0 129480000 126930000 0 0 0 178150000 0 150800000 0 0 0 97269000 88069000 95494000 0 0 0 129780000 128600000 130980000 0 0 0 5871 1505 5723 108690;108691;108692;108693;108694;108695;108696;108697;108698;108699 66361;66362;66363;66364;66365;66366 66366 6 FATSDLNDLYR Unmodified 1313.6252 0.62518031 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 1 1 1 5 3 3 1 1 2 7 8 8 1 1 1 4 5 3 37.147 35.935 1;2;3 6.4404E-56 12125 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 334.57 310.41 43444000000 341790000 331070000 319790000 16055000 15811000 15189000 327580000 347010000 330160000 2451300000 2462100000 2408500000 255070000 257030000 231030000 9169700000 6985100000 6468800000 418750000 391450000 362490000 3370900000 3053000000 3113900000 5872 458 5724 108700;108701;108702;108703;108704;108705;108706;108707;108708;108709;108710;108711;108712;108713;108714;108715;108716;108717;108718;108719;108720;108721;108722;108723;108724;108725;108726;108727;108728;108729;108730;108731;108732;108733;108734;108735;108736;108737;108738;108739;108740;108741;108742;108743;108744;108745;108746;108747;108748;108749;108750;108751;108752;108753;108754;108755;108756;108757;108758;108759;108760;108761;108762;108763 66367;66368;66369;66370;66371;66372;66373;66374;66375;66376;66377;66378;66379;66380;66381;66382;66383;66384;66385;66386;66387;66388;66389;66390;66391;66392;66393;66394;66395;66396;66397;66398;66399;66400;66401;66402;66403;66404;66405;66406;66407;66408;66409;66410;66411;66412;66413;66414;66415;66416;66417;66418;66419;66420;66421;66422;66423;66424;66425;66426;66427;66428;66429;66430;66431;66432;66433;66434;66435;66436;66437 66388 70 FATSDLNDLYRR Unmodified 1469.7263 0.72629134 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 3 2 2 1 1 1 30.107 28.971 2;3 9.8274E-32 9879 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 218.49 210.85 9940400000 0 0 0 0 1243700 1227200 0 0 0 807960000 123190000 129410000 0 0 0 3909300000 4221900000 262740000 0 0 0 262180000 221160000 0 5873 458 5725 108764;108765;108766;108767;108768;108769;108770;108771;108772;108773;108774;108775;108776;108777;108778;108779 66438;66439;66440;66441;66442;66443;66444;66445;66446;66447;66448;66449;66450;66451;66452;66453 66440 15 FAVDFVGGDLK Unmodified 1166.5972 0.59717465 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 42.904 41 2 0.00077903 20400 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.355 75.649 78613000 0 19175000 0 0 0 0 20274000 18559000 0 0 0 0 0 0 0 0 0 0 20605000 0 0 0 0 0 5874 1548 5726 108780;108781;108782;108783 66454;66455 66455 1 FAYGIKDPIYQK Unmodified 1441.7606 0.76055158 39 P00803 lepB Signal peptidase I yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.799 27.336 3 0.00081747 10652 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 61.344 58.647 85307000 0 4205800 0 0 1379000 1221900 6887700 6830800 5096800 4879000 4369800 3790500 5670500 4118500 5596400 1389100 0 0 8095000 6186100 7114900 2990000 2891700 2593200 5875 39 5727 108784;108785;108786;108787;108788;108789;108790;108791;108792;108793;108794;108795;108796;108797;108798;108799;108800;108801;108802 66456;66457 66456 2 FAYNINNNGHMLR Unmodified 1562.7412 0.7412299 77 P02943 lamB Maltoporin yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 24.753 23.759 3 0.00010237 8245 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 73.632 70.317 59261000 0 0 0 800430 1076800 1105300 0 1570000 0 5348900 6220100 5299900 0 0 0 2565800 3245400 5097700 0 0 0 9549100 10380000 7001600 5876 77 5728 108803;108804;108805;108806;108807;108808;108809;108810;108811;108812;108813;108814;108815 66458 66458 1 FAYVDILQNPDIR Unmodified 1562.8093 0.80929269 705 P0AC69 grxD Glutaredoxin-4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 2 2 2 2 2 3 2 1 2 2 3 2 2 1 2 1 3 3 3 2 2 2 48.89 47.619 2;3 4.1722E-09 23139 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 204.5 198.4 9429800000 1041100000 1065800000 939380000 13168000 14232000 15862000 613310000 609570000 558340000 13634000 18653000 15892000 761560000 704910000 640750000 2663700 7296000 1523200 785770000 757370000 797420000 19031000 16723000 15866000 5877 705 5729 108816;108817;108818;108819;108820;108821;108822;108823;108824;108825;108826;108827;108828;108829;108830;108831;108832;108833;108834;108835;108836;108837;108838;108839;108840;108841;108842;108843;108844;108845;108846;108847;108848;108849;108850;108851;108852;108853;108854;108855;108856;108857;108858;108859;108860;108861;108862;108863;108864;108865;108866 66459;66460;66461;66462;66463;66464;66465;66466;66467;66468;66469;66470;66471;66472;66473;66474;66475;66476;66477;66478;66479;66480;66481;66482;66483;66484;66485;66486;66487;66488;66489 66479 29 FCDELRDQNEDIDREDFAQR Unmodified 2570.1092 0.10919247 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 2 1 2 2 2 2 1 1 2 2 2 26.238 25.2 3;4 6.3138E-05 8873 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 77.023 77.023 209630000 8833400 0 13301000 987690 952070 0 12751000 8318100 7360900 3528800 3376900 2817200 7745500 11591000 8866600 17041000 11826000 11869000 16248000 10091000 10342000 13406000 13491000 14886000 5878 1445 5730 108867;108868;108869;108870;108871;108872;108873;108874;108875;108876;108877;108878;108879;108880;108881;108882;108883;108884;108885;108886;108887;108888;108889;108890;108891;108892;108893;108894;108895;108896;108897 66490;66491;66492;66493;66494;66495;66496;66497;66498 66497 9 FCGAEGLNNVITLSTFR Unmodified 1897.9356 0.93563219 400 P0A862 tpx Thiol peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 3 1 3 2 3 2 3 2 1 51.059 49.801 2;3 2.5541E-50 23285 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 289.45 287.13 11728000000 1206800000 1182100000 1099900000 8877800 9988800 10218000 913150000 838290000 738270000 0 2710900 0 788090000 903500000 816400000 0 0 0 1144400000 1064400000 998910000 0 1970000 0 5879 400 5731 108898;108899;108900;108901;108902;108903;108904;108905;108906;108907;108908;108909;108910;108911;108912;108913;108914;108915;108916;108917;108918;108919;108920;108921;108922;108923;108924;108925;108926;108927;108928;108929;108930;108931;108932;108933 66499;66500;66501;66502;66503;66504;66505;66506;66507;66508;66509;66510;66511;66512;66513;66514;66515;66516;66517;66518;66519;66520;66521;66522;66523;66524;66525;66526;66527;66528;66529;66530;66531;66532;66533 66529 33 FCGTGCGVLVGTQQGR Unmodified 1695.7821 0.78210844 1434 P33937 napA Periplasmic nitrate reductase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 25.589 24.675 2 0.0012931 10549 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 89.189 83.465 43443000 6803900 5931600 4357800 0 0 0 0 0 0 0 0 0 5954100 4372700 6253000 0 0 0 6213000 0 3556900 0 0 0 5880 1434 5732 108934;108935;108936;108937;108938;108939;108940;108941 66534;66535 66535 1 FCLAVATTLPGYLHMR Unmodified 1848.9379 0.9378808 960 P0AFQ7 ycfH Uncharacterized deoxyribonuclease YcfH yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.444 47.121 3 1.9727E-08 22966 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.35 112.16 229910000 25511000 28490000 25146000 0 0 0 14308000 13836000 15584000 0 0 0 16893000 15116000 15447000 0 0 0 17453000 17875000 24257000 0 0 0 5881 960 5733 108942;108943;108944;108945;108946;108947;108948;108949;108950;108951;108952;108953 66536;66537;66538;66539;66540;66541;66542;66543 66538 8 FCLPNSR Unmodified 892.42252 0.42252152 243 P0A6G7 clpP ATP-dependent Clp protease proteolytic subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.416 21.546 2 0.0010429 8339 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 138.07 134.22 1662300000 132970000 124120000 125380000 2076800 1995400 2360800 177240000 182300000 179520000 2222900 0 1367900 113770000 106950000 98046000 700350 631800 672910 144850000 139590000 123140000 1454700 0 991330 5882 243 5734 108954;108955;108956;108957;108958;108959;108960;108961;108962;108963;108964;108965;108966;108967;108968;108969;108970;108971;108972;108973;108974;108975 66544;66545;66546;66547;66548;66549;66550;66551;66552;66553 66551 10 FCLTGGFR Unmodified 956.45382 0.45382165 1404 P33015 yeeE UPF0394 inner membrane protein YeeE yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 33.213 31.486 2 0.00042382 14950 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 139.92 139.92 106970000 0 0 0 0 0 0 0 10671000 9641600 1313800 1330400 0 8069900 9746000 8769600 0 0 0 17247000 17809000 17209000 1538100 1755800 1868300 5883 1404 5735 108976;108977;108978;108979;108980;108981;108982;108983;108984;108985;108986;108987;108988 66554;66555;66556;66557;66558;66559 66555 6 FCLVAEGQAQLYPR Unmodified 1650.8188 0.81881152 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 40.587 38.879 2 0.067978 19014 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 54.486 47.106 32467000 0 0 0 0 431850 609690 8302700 0 8528700 0 0 0 2642300 3213400 2680300 0 0 0 3311300 0 2746400 0 0 0 5884 1193 5736 108989;108990;108991;108992;108993;108994;108995;108996;108997 66560 66560 0 FCNSEFGDLK Unmodified 1215.523 0.52302343 1331 P29217 yceH UPF0502 protein YceH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.183 26.035 2 0.00055643 11870 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.358 94.965 664870000 69323000 67273000 62675000 0 0 0 63863000 55934000 56831000 0 0 0 53369000 47992000 45089000 0 0 0 40984000 51918000 49623000 0 0 0 5885 1331 5737 108998;108999;109000;109001;109002;109003;109004;109005;109006;109007;109008;109009 66561;66562;66563;66564;66565;66566;66567 66564 7 FCPTGGISPANYR Unmodified 1438.6663 0.66633362 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.035 26.846 2 6.3231E-10 12599 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 179.1 179.1 6470400000 485140000 440600000 389760000 1371900 1308500 1161100 724910000 697510000 702600000 0 0 0 472850000 443820000 442910000 0 0 0 581290000 577000000 508130000 0 0 0 5886 490 5738 109010;109011;109012;109013;109014;109015;109016;109017;109018;109019;109020;109021;109022;109023;109024 66568;66569;66570;66571;66572;66573;66574;66575;66576;66577;66578;66579;66580 66568 12 FCQALMTELYR Unmodified 1430.6686 0.66864181 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 40.982 39.249 2 1.8438E-07 18876 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206.38 206.38 858530000 220140000 221920000 205330000 0 0 0 31782000 28922000 28688000 0 1397600 0 17348000 13777000 15160000 0 0 0 24071000 23618000 26376000 0 0 0 5887 26 5739 109025;109026;109027;109028;109029;109030;109031;109032;109033;109034;109035;109036;109037 66581;66582;66583;66584;66585 66584 4 FCQEEDKSTNRPYTSR Unmodified 2016.896 0.89595222 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.345 12.055 4 7.2121E-05 2954 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 79.652 79.652 218410000 11655000 7447900 8768800 3282500 0 0 22483000 17054000 18066000 4637800 0 0 17726000 19237000 15431000 0 7004500 0 21228000 15691000 24922000 0 3779600 0 5888 499 5740 109038;109039;109040;109041;109042;109043;109044;109045;109046;109047;109048;109049;109050;109051;109052;109053 66586;66587;66588;66589 66589 4 FCQELGK Unmodified 880.41129 0.41128813 32 P00547 thrB Homoserine kinase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.255 14.902 2 0.0079027 4765 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.369 80.424 184840000 42011000 33165000 30079000 0 0 0 10400000 12511000 0 0 895960 913450 0 0 0 0 0 0 27667000 0 27195000 0 0 0 5889 32 5741 109054;109055;109056;109057;109058;109059;109060;109061;109062 66590;66591 66590 2 FCQFYQQDPLQR Unmodified 1628.7406 0.7405612 1853 P76346 mtfA Protein MtfA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.195 32.747 2 1.0894E-11 15432 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 186.41 181.52 119740000 14859000 18371000 15068000 0 0 0 7882700 12017000 7417700 0 0 0 5297600 8755200 5995000 0 0 0 7682400 10031000 6367700 0 0 0 5890 1853 5742 109063;109064;109065;109066;109067;109068;109069;109070;109071;109072;109073;109074 66592;66593;66594;66595;66596;66597;66598;66599;66600;66601 66599 9 FCQLLGGR Unmodified 949.48037 0.48037075 98 P04968 ilvA L-threonine dehydratase biosynthetic IlvA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 24.828 23.955 2 0.0016332 10512 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.22 97.751 63167000 13893000 14786000 11814000 0 0 0 0 0 4301300 0 0 0 3279600 3132900 2406300 0 0 0 0 5298800 4255400 0 0 0 5891 98 5743 109075;109076;109077;109078;109079;109080;109081;109082;109083 66602;66603;66604 66603 2 FCSTAQQGFNR Unmodified 1314.5775 0.57751861 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.94 16.491 2 1.4012E-05 5707 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 171.73 171.73 237960000 11502000 14604000 9670000 1649100 1734500 1373600 16143000 13095000 12558000 12331000 12762000 11620000 11487000 10029000 9766500 2759800 1737800 2348300 22833000 22034000 19837000 7083900 4440300 4564200 5892 1451 5744 109084;109085;109086;109087;109088;109089;109090;109091;109092;109093;109094;109095;109096;109097;109098;109099;109100;109101;109102;109103;109104;109105;109106;109107 66605;66606;66607;66608;66609;66610;66611;66612;66613;66614;66615;66616;66617;66618;66619;66620;66621 66615 17 FCSVEMGSFYLDIIK Unmodified 1807.8525 0.85247941 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.499 53.044 2 2.9793E-06 26058 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 108.56 105.24 382030000 36512000 35822000 30764000 0 0 0 33838000 27185000 28108000 0 2629800 0 28160000 28256000 23042000 0 0 0 38611000 38297000 30808000 0 0 0 5893 58 5745 109108;109109;109110;109111;109112;109113;109114;109115;109116;109117;109118;109119;109120 66622;66623 66623 2 FCVHLIPETLER Unmodified 1512.7759 0.77588407 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 37.84 36.131 2;3 9.286E-12 17358 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 188.87 172.24 2649900000 259090000 253220000 236410000 0 0 892380 216410000 256320000 244220000 0 821540 0 183530000 159910000 193100000 0 0 0 216250000 210700000 219020000 0 0 0 5894 963 5746 109121;109122;109123;109124;109125;109126;109127;109128;109129;109130;109131;109132;109133;109134;109135;109136;109137;109138;109139;109140;109141;109142;109143;109144;109145;109146 66624;66625;66626;66627;66628;66629;66630;66631;66632;66633;66634;66635;66636;66637;66638;66639;66640;66641;66642 66634 19 FCVPNKEVMPER Unmodified 1504.7167 0.71665463 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 22.148 21.961 3 0.0072235 6845 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 57.802 48.514 25878000 0 4780700 3716500 5259500 3851700 0 0 0 0 0 0 0 0 0 0 1699700 1449200 1229700 3891200 0 0 0 0 0 5895 1577 5747 109147;109148;109149;109150;109151;109152;109153;109154;109155 66643;66644;66645 66645 3 FDAEAHFR Unmodified 991.45118 0.45117911 1239 P24192 hypD Hydrogenase isoenzymes formation protein HypD yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 16.24 17.181 2 0.0010111 5750 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 113.7 90.677 10717000 0 0 0 0 0 0 0 0 0 0 0 0 3204000 4873700 2639200 0 0 0 0 0 0 0 0 0 5896 1239 5748 109156;109157;109158 66646;66647 66646 2 FDAHDFADQAK Unmodified 1263.552 0.55201537 1074 P11880 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 21.591 21.619 2;3 1.8322E-07 8990 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 195.36 194.85 597580000 53422000 52770000 47808000 363600 493520 1192800 56620000 47051000 47261000 0 0 0 44115000 42936000 39326000 0 0 0 55158000 54218000 53490000 0 1351500 0 5897 1074 5749 109159;109160;109161;109162;109163;109164;109165;109166;109167;109168;109169;109170;109171;109172;109173;109174;109175;109176;109177;109178;109179;109180;109181;109182;109183;109184;109185;109186;109187 66648;66649;66650;66651;66652;66653;66654;66655;66656;66657;66658 66650 11 FDAQTLHSFIQAVFR Unmodified 1778.9104 0.91040372 1342 P30178 ybiC Uncharacterized oxidoreductase YbiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.907 53.438 3 6.0957E-07 26281 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.72 110.1 505320000 85302000 81600000 80498000 0 0 0 43941000 41697000 40722000 0 0 0 16264000 16731000 17364000 0 0 0 27576000 24120000 29501000 0 0 0 5898 1342 5750 109188;109189;109190;109191;109192;109193;109194;109195;109196;109197;109198;109199 66659;66660;66661 66661 3 FDAVQGK Unmodified 763.38645 0.38645359 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 15.398 15.453 2 0.13093 4227 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 48.242 37.935 92971000 0 0 0 0 0 0 0 0 0 32364000 34020000 26587000 0 0 0 0 0 0 0 0 0 0 0 0 5899 1587 5751 109200;109201;109202 66662;66663 66662 2 FDAWAATVPHTIGNPLYHWTHLELR Unmodified 2944.4773 0.47728129 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 49.429 48.042 5 7.035E-11 23757 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 102.67 100.62 304750000 37897000 43112000 40324000 0 0 0 34499000 38139000 34784000 0 0 0 25971000 22188000 17333000 0 0 0 0 10500000 0 0 0 0 5900 427 5752 109203;109204;109205;109206;109207;109208;109209;109210;109211;109212 66664;66665;66666;66667;66668;66669;66670 66665 7 FDCALGSHAMMR Unmodified 1394.5893 0.58934563 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 22.435 21.89 3 0.0091705 9592 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 56.205 56.205 142810000 16825000 16137000 14512000 0 0 0 25105000 29904000 30204000 0 0 0 2240500 2299000 1703400 0 0 0 0 2633400 1249500 0 0 0 5901 1413 5753 109213;109214;109215;109216;109217;109218;109219;109220;109221;109222;109223 66671;66672;66673;66674;66675;66676 66672 6 FDDIAQK Unmodified 835.40758 0.40758296 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.475 14.989 2 0.0010521 4795 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 137.83 70.837 4539800000 308230000 276960000 268690000 0 0 0 790660000 726420000 642800000 72206000 63007000 70031000 312620000 290400000 290490000 0 3927900 6682300 379110000 0 0 13889000 12830000 10893000 5902 1045 5754 109224;109225;109226;109227;109228;109229;109230;109231;109232;109233;109234;109235;109236;109237;109238;109239;109240;109241 66677;66678;66679;66680;66681;66682;66683 66680 2 FDDNSYK Unmodified 887.36611 0.36611208 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.869 13.533 2 0.005062 3951 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 101.21 101.21 648430000 40843000 37701000 38456000 1471700 1160500 1670900 54726000 51516000 54424000 0 5856700 6154100 58184000 42311000 42120000 3271700 3335100 4869700 67903000 69036000 60426000 2996200 0 0 5903 883 5755 109242;109243;109244;109245;109246;109247;109248;109249;109250;109251;109252;109253;109254;109255;109256;109257;109258;109259;109260;109261;109262 66684;66685;66686;66687;66688;66689;66690;66691;66692;66693;66694;66695 66687 12 FDDTNPVK Unmodified 934.43961 0.43961137 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.929 15.72 2 0.0028449 5300 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 97.093 91.555 171660000 12475000 11432000 9711900 0 0 0 14834000 16013000 13624000 0 0 0 16676000 16066000 17730000 0 0 0 12625000 14782000 15692000 0 0 0 5904 63 5756 109263;109264;109265;109266;109267;109268;109269;109270;109271;109272;109273;109274 66696;66697;66698;66699;66700;66701;66702;66703 66699 8 FDDTNPVKEDIEYVESIK Unmodified 2140.0212 0.021195537 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.017 45.628 2;3 2.3041E-55 22727 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 287.85 265.98 1746600000 131940000 121420000 111520000 0 0 0 151720000 135620000 140980000 0 0 0 136600000 130700000 138170000 0 0 0 203700000 177770000 166440000 0 0 0 5905 63 5757 109275;109276;109277;109278;109279;109280;109281;109282;109283;109284;109285;109286;109287;109288;109289;109290;109291;109292;109293;109294;109295;109296;109297;109298 66704;66705;66706;66707;66708;66709;66710;66711;66712;66713;66714;66715;66716;66717;66718;66719;66720;66721;66722;66723;66724 66705 21 FDEAIINYVR Unmodified 1238.6295 0.62953741 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.967 39.108 2 6.3293E-09 19486 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 190.26 152.79 1164800000 122510000 101450000 99250000 1888200 2090500 2561100 90786000 76551000 81514000 11521000 8283400 9810500 61063000 60577000 56446000 0 0 0 120750000 126830000 117390000 4510700 5164600 3844400 5906 564 5758 109299;109300;109301;109302;109303;109304;109305;109306;109307;109308;109309;109310;109311;109312;109313;109314;109315;109316;109317;109318;109319 66725;66726;66727;66728;66729;66730;66731;66732;66733;66734;66735;66736;66737;66738;66739 66725 13 FDEEANIHWAK Unmodified 1358.6255 0.62551466 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 2 2 2 1 2 1 1 1 1 1 24.483 23.485 2;3 0.0035466 10610 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 49.189 46.676 81547000 12555000 14032000 15437000 0 0 0 10128000 6489200 11698000 604520 0 0 2879300 2415500 2477500 0 0 0 2831500 0 0 0 0 0 5907 326 5759 109320;109321;109322;109323;109324;109325;109326;109327;109328;109329;109330;109331;109332;109333;109334 66740;66741;66742;66743 66740 4 FDEHFVLDILVDDGHVR Unmodified 2024.9956 0.99558991 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 52.048 50.922 3;4 4.8202E-10 20487 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 134 134 2395000000 27900000 29306000 29886000 4620300 2727200 6020100 312120000 298330000 343810000 118980000 97467000 106520000 184750000 172140000 178090000 23274000 20756000 22626000 121870000 120090000 115540000 19513000 18700000 19929000 5908 25 5760 109335;109336;109337;109338;109339;109340;109341;109342;109343;109344;109345;109346;109347;109348;109349;109350;109351;109352;109353;109354;109355;109356;109357;109358;109359;109360;109361;109362;109363;109364;109365;109366;109367;109368;109369;109370;109371;109372;109373;109374;109375;109376;109377;109378;109379;109380;109381 66744;66745;66746;66747;66748;66749;66750;66751;66752;66753;66754;66755;66756;66757;66758;66759;66760;66761;66762;66763;66764;66765;66766;66767;66768;66769;66770;66771 66748 28 FDELSLK Unmodified 850.44363 0.44363412 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.664 26.517 2 0.0035704 12199 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.43 90.724 191380000 18721000 18890000 15872000 0 0 0 16533000 12700000 15664000 0 0 0 10411000 11966000 10597000 0 0 0 21872000 20867000 17285000 0 0 0 5909 1221 5761 109382;109383;109384;109385;109386;109387;109388;109389;109390;109391;109392;109393 66772;66773;66774;66775;66776;66777;66778;66779;66780 66772 9 FDETGHSQIMVEPVADVTAYGVVDCK Unmodified 2866.3153 0.31534542 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.83 43.315 3 2.1929E-10 21391 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 117.08 115.76 332430000 17856000 17313000 15343000 0 0 0 45689000 36754000 34147000 0 0 0 29718000 25569000 25442000 0 0 0 26569000 30094000 27933000 0 0 0 5910 876 5762 109394;109395;109396;109397;109398;109399;109400;109401;109402;109403;109404;109405 66781;66782;66783;66784;66785;66786;66787;66788;66789;66790 66782 9 FDEVGNLYGR Unmodified 1168.5513 0.55128709 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 29.427 27.633 2 1.8252E-06 9377 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 160.75 154.01 70883000 0 0 0 17996000 17033000 17255000 0 0 0 1058800 923140 0 0 0 0 0 0 0 0 0 0 6888700 4916800 4811100 5911 1904 5763 109406;109407;109408;109409;109410;109411;109412;109413 66791;66792;66793;66794 66793 4 FDFEITLLTVSAVDGVHFCAPVGHR Unmodified 2786.385 0.38502039 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 54.533 53.127 4 4.7762E-05 26210 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.477 79.649 68364000 23848000 22895000 21621000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5912 1412 5764 109414;109415;109416 66795 66795 1 FDFLGLR Unmodified 866.46504 0.46503826 1060 P10443 dnaE DNA polymerase III subunit alpha yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 2 1 2 2 3 1 1 1 2 2 2 2 1 2 1 1 1 43.653 42.009 2 0.0073714 18674 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.584 75.477 818220000 6106200 39890000 7082700 0 0 0 51618000 49673000 194740000 2927300 1970000 2107700 88821000 85170000 32527000 0 0 0 139580000 7561600 104200000 1235400 1495300 1506500 5913 1060 5765 109417;109418;109419;109420;109421;109422;109423;109424;109425;109426;109427;109428;109429;109430;109431;109432;109433;109434;109435;109436;109437;109438;109439;109440;109441;109442;109443;109444 66796;66797;66798;66799;66800;66801;66802;66803;66804;66805;66806;66807;66808 66796 13 FDFNDICAAISDK Unmodified 1514.6711 0.67114423 896 P0AEY3 mazG Nucleoside triphosphate pyrophosphohydrolase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.951 49.695 2 2.2563E-06 24411 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.76 115.33 118350000 7580200 6880400 5702100 0 0 0 7698900 10003000 11016000 0 0 0 9672800 9981300 10995000 0 0 0 13490000 12495000 12833000 0 0 0 5914 896 5766 109445;109446;109447;109448;109449;109450;109451;109452;109453;109454;109455;109456 66809;66810 66809 2 FDFPDRDDENWLCHSLYLPESESMTR Unmodified 3258.4023 0.40226295 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 1 2 1 2 2 2 1 1 1 2 2 2 2 2 2 50.876 49.673 3;4 2.0475E-22 24100 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 168.65 168.65 1090900000 57207000 52978000 60101000 20109000 16335000 15289000 32814000 24602000 31635000 17135000 21127000 18240000 71255000 63917000 65177000 7404900 6274200 9198900 146300000 144390000 131670000 29021000 25154000 23605000 5915 698 5767 109457;109458;109459;109460;109461;109462;109463;109464;109465;109466;109467;109468;109469;109470;109471;109472;109473;109474;109475;109476;109477;109478;109479;109480;109481;109482;109483;109484;109485;109486;109487;109488;109489;109490;109491;109492;109493;109494;109495;109496;109497;109498 66811;66812;66813;66814;66815;66816;66817;66818;66819;66820;66821;66822;66823;66824;66825;66826;66827;66828;66829;66830;66831 66823 21 FDFPDRDDENWLCHSLYLPESESMTRR Unmodified 3414.5034 0.50337398 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 2 1 1 1 2 1 1 47.267 45.612 4;5 0.059216 16349 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 35.32 35.32 47009000 0 0 0 6779000 8715500 5342000 0 0 0 0 3714100 2625300 0 0 0 0 0 0 0 0 0 9439900 5813800 4579300 5916 698 5768 109499;109500;109501;109502;109503;109504;109505;109506;109507;109508 66832;66833;66834 66832 3 FDFPVVGVVPAIKPAAR Unmodified 1782.0192 0.019225885 1201 P22634 murI Glutamate racemase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 48.584 47.245 3 0.0048492 22981 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 52.254 52.254 69879000 0 6698500 6746300 0 0 0 7404100 6006500 6787100 0 0 0 4334500 5661100 5300600 0 0 0 7481800 5845700 7613300 0 0 0 5917 1201 5769 109509;109510;109511;109512;109513;109514;109515;109516;109517;109518;109519 66835;66836;66837;66838 66835 4 FDFSHNEAMKPEEIR Unmodified 1848.8465 0.84648283 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 3 3 3 2 2 2 3 3 3 2 1 1 3 3 3 1 1 1 25.659 24.551 2;3;4 3.0892E-20 11327 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 252.99 241.46 4635400000 405490000 377150000 377430000 6174000 5177400 3552400 346060000 343410000 399620000 13196000 15219000 15867000 331410000 329630000 287760000 4483600 2508000 2055600 472910000 445570000 426310000 7993500 8616500 7843400 5918 59 5770 109520;109521;109522;109523;109524;109525;109526;109527;109528;109529;109530;109531;109532;109533;109534;109535;109536;109537;109538;109539;109540;109541;109542;109543;109544;109545;109546;109547;109548;109549;109550;109551;109552;109553;109554;109555;109556;109557;109558;109559;109560;109561;109562;109563;109564;109565;109566;109567;109568;109569;109570;109571;109572;109573;109574 66839;66840;66841;66842;66843;66844;66845;66846;66847;66848;66849;66850;66851;66852;66853;66854;66855;66856;66857;66858;66859;66860;66861;66862;66863;66864;66865;66866;66867;66868;66869;66870;66871;66872;66873;66874;66875;66876 66845 38 FDFSILQSMAHDLAQTAWR Unmodified 2236.0735 0.073522654 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 55.57 54.068 3 0.0054977 26553 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 59.9 57.869 230710000 0 16133000 0 0 0 0 20275000 21313000 20815000 0 0 0 0 23539000 28241000 0 0 0 35131000 32419000 32846000 0 0 0 5919 1548 5771 109575;109576;109577;109578;109579;109580;109581;109582;109583 66877;66878;66879 66879 0 FDGFVHSIGFAPGDQLDGDYVNAVTR Unmodified 2796.3144 0.31435787 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 1 1 1 1 2 2 1 1 1 1 3 2 1 1 2 2 2 1 1 50.195 48.875 2;3 1.087E-60 24031 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 318.16 312.5 11771000000 1033000000 941570000 832710000 8456300 10119000 8666400 54981000 1230900000 1177600000 8483000 9721300 10931000 35359000 1019400000 1063300000 4724700 6024500 0 1423900000 1428400000 1444900000 9361600 0 8007500 5920 869 5772 109584;109585;109586;109587;109588;109589;109590;109591;109592;109593;109594;109595;109596;109597;109598;109599;109600;109601;109602;109603;109604;109605;109606;109607;109608;109609;109610;109611;109612;109613;109614;109615;109616;109617 66880;66881;66882;66883;66884;66885;66886;66887;66888;66889;66890;66891;66892;66893;66894;66895;66896;66897;66898;66899;66900;66901;66902;66903;66904;66905 66886 26 FDGLNEAEFPGTVHVAGPVPDDIAPGSVLK Unmodified 3047.524 0.52401629 115 P05706 srlB Glucitol/sorbitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1 50.366 48.933 3 2.5399E-08 23847 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 104.67 102.67 542080000 7941000 10816000 7204900 0 0 0 61726000 60109000 62484000 8451200 8825900 8872100 61862000 51356000 53961000 0 0 0 42866000 46218000 49389000 0 0 0 5921 115 5773 109618;109619;109620;109621;109622;109623;109624;109625;109626;109627;109628;109629;109630;109631;109632;109633;109634;109635;109636 66906;66907;66908;66909;66910;66911;66912;66913;66914;66915 66910 10 FDGNACVLLNNNSEQPIGTR Unmodified 2218.0437 0.043679089 820 P0ADY3 rplN 50S ribosomal protein L14 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 3 2 3 2 2 2 2 2 2 3 2 2 3 2 36.643 35.051 2;3 7.9886E-46 17189 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 346.5 341.22 2843600000 296020000 296200000 311510000 26505000 26475000 27137000 112000000 117300000 102600000 51807000 45921000 47067000 144250000 136080000 118070000 45284000 20046000 19411000 259110000 216320000 235670000 61982000 60437000 66431000 5922 820 5774 109637;109638;109639;109640;109641;109642;109643;109644;109645;109646;109647;109648;109649;109650;109651;109652;109653;109654;109655;109656;109657;109658;109659;109660;109661;109662;109663;109664;109665;109666;109667;109668;109669;109670;109671;109672;109673;109674;109675;109676;109677;109678;109679;109680;109681;109682;109683;109684;109685;109686;109687;109688 66916;66917;66918;66919;66920;66921;66922;66923;66924;66925;66926;66927;66928;66929;66930;66931;66932;66933;66934;66935;66936;66937;66938;66939;66940;66941;66942;66943;66944;66945;66946;66947;66948;66949;66950;66951;66952;66953;66954;66955;66956;66957;66958;66959;66960;66961;66962 66928 47 FDGTVEVK Unmodified 893.44945 0.44944778 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 2 2 1 2 2 2 1 2 2 2 1 17.818 18.434 2 0.001419 6664 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 109.01 94.348 32102000000 1415700000 1400500000 1088200000 11611000 9856800 11974000 4118100000 3991200000 4027800000 10252000 0 0 2630000000 2354300000 2540900000 0 0 2293000 2794000000 2708200000 2984800000 0 0 2464600 5923 504 5775 109689;109690;109691;109692;109693;109694;109695;109696;109697;109698;109699;109700;109701;109702;109703;109704;109705;109706;109707;109708;109709;109710;109711;109712;109713;109714;109715 66963;66964;66965;66966;66967;66968;66969;66970;66971;66972;66973;66974;66975;66976;66977;66978;66979;66980 66968 13 FDGVLASELADPQLYK Unmodified 1764.8934 0.89341625 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.576 48.167 2 1.3763E-08 22476 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.28 121.62 880510000 77001000 62065000 61793000 0 0 0 74208000 67038000 68811000 1732300 1096400 0 73844000 62633000 63484000 0 0 0 89133000 94757000 82911000 0 0 0 5924 60 5776 109716;109717;109718;109719;109720;109721;109722;109723;109724;109725;109726;109727;109728;109729 66981;66982;66983;66984;66985;66986;66987;66988 66988 7 FDIPFELVSHEGLTR Unmodified 1758.8941 0.89408495 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.181 47.902 3 0.021585 22363 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 44.807 41.146 2111000000 380550000 343010000 315260000 0 0 1151400 97920000 107650000 91044000 0 0 2378000 92469000 89449000 107920000 701080 0 0 156680000 187090000 137750000 0 0 0 5925 1455 5777 109730;109731;109732;109733;109734;109735;109736;109737;109738;109739;109740;109741;109742;109743;109744 66989;66990;66991 66990 2 FDIPVYHPDVR Unmodified 1356.6826 0.68263561 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 35.171 33.775 2;3 8.7822E-05 16046 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.68 98.681 1125300000 165180000 138490000 136430000 0 0 0 103020000 94294000 94901000 0 0 0 49783000 47771000 52106000 0 433990 0 92175000 79553000 71205000 0 0 0 5926 1233 5778 109745;109746;109747;109748;109749;109750;109751;109752;109753;109754;109755;109756;109757;109758;109759;109760;109761;109762;109763;109764;109765;109766;109767;109768;109769 66992;66993;66994;66995;66996;66997;66998;66999;67000;67001;67002;67003;67004;67005;67006;67007;67008;67009;67010;67011 66999 20 FDITEEGLR Unmodified 1078.5295 0.52948901 165 P07648 recC RecBCD enzyme subunit RecC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 33.524 31.989 2 0.0020126 15127 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.906 73.803 26091000 0 5209800 3570400 0 0 0 3446200 4167900 4163200 0 0 0 0 0 5533300 0 0 0 0 0 0 0 0 0 5927 165 5779 109770;109771;109772;109773;109774;109775;109776;109777 67012;67013;67014;67015;67016 67015 2 FDKEALINELDAMTAR Unmodified 1835.9087 0.90874874 1534 P39384 yjiM Uncharacterized protein YjiM yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.684 47.259 3 0.00012349 22037 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 72.819 66.915 87807000 0 0 0 0 0 0 15121000 14144000 14510000 0 2715900 3029800 8842300 7260700 7287700 0 0 0 5239400 5167000 4489200 0 0 0 5928 1534 5780 109778;109779;109780;109781;109782;109783;109784;109785;109786;109787;109788 67017;67018;67019 67018 3 FDLAAVMGR Unmodified 978.49569 0.49568646 1104 P15067 glgX Glycogen debranching enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.651 43.136 2 0.00022858 21378 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.08 95.567 96750000 13047000 8547300 8191300 0 0 0 10999000 10883000 10832000 0 0 0 6435000 4725500 5435700 0 0 0 5486100 5521000 6647800 0 0 0 5929 1104 5781 109789;109790;109791;109792;109793;109794;109795;109796;109797;109798;109799;109800 67020;67021;67022;67023;67024;67025;67026 67021 7 FDLAFANDPDYDR Unmodified 1557.6736 0.67358707 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.995 41.454 2 7.7373E-07 19397 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.3 136 112200000 11276000 8871700 5941600 0 0 0 9281800 8978500 11159000 0 0 0 8287200 9855800 8322100 0 0 0 8931300 11775000 9519000 0 0 0 5930 1450 5782 109801;109802;109803;109804;109805;109806;109807;109808;109809;109810;109811;109812 67027;67028;67029;67030;67031;67032;67033;67034 67034 8 FDLVLVAAR Unmodified 1002.5862 0.58621603 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 1 2 1 1 2 2 1 1 3 3 2 1 1 1 1 2 2 44.526 43.234 2 4.1169E-05 21147 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 151.29 138.33 20649000000 258800000 239720000 209590000 3102300 2981100 2213800 224230000 222470000 215760000 1130200000 1133700000 907140000 205380000 173070000 202190000 4468400000 3247900000 3558700000 336540000 321000000 287180000 1227700000 888610000 1182400000 5931 384 5783 109813;109814;109815;109816;109817;109818;109819;109820;109821;109822;109823;109824;109825;109826;109827;109828;109829;109830;109831;109832;109833;109834;109835;109836;109837;109838;109839;109840;109841;109842;109843;109844;109845;109846;109847;109848 67035;67036;67037;67038;67039;67040;67041;67042;67043;67044;67045;67046;67047;67048;67049;67050;67051;67052;67053;67054;67055;67056;67057;67058;67059;67060;67061;67062;67063;67064;67065;67066;67067;67068;67069;67070;67071;67072;67073;67074;67075;67076;67077;67078;67079;67080;67081;67082;67083;67084;67085;67086;67087;67088;67089;67090;67091;67092;67093;67094;67095 67061 61 FDMEIEEDLVEEVAR Unmodified 1822.8295 0.82949536 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.746 53.298 2 5.1291E-27 26487 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 234.17 224.33 1124200000 96472000 97569000 86337000 0 0 0 69626000 38628000 46293000 0 0 0 131380000 113170000 103800000 0 0 0 121380000 111140000 108360000 0 0 0 5932 161 5784 109849;109850;109851;109852;109853;109854;109855;109856;109857;109858;109859;109860 67096;67097;67098;67099;67100;67101;67102;67103;67104;67105;67106;67107 67102 12 FDMSEYMER Unmodified 1206.4685 0.46854502 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.938 35.091 2 9.5931E-06 17043 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.33 167.33 202600000 27110000 21809000 25241000 1681100 1660700 2090400 12119000 10902000 10198000 10716000 7931800 7902900 9407100 11311000 10712000 0 0 0 8278700 9859200 8245100 1595100 2088700 1738200 5933 658 5785 109861;109862;109863;109864;109865;109866;109867;109868;109869;109870;109871;109872;109873;109874;109875;109876;109877;109878;109879;109880;109881 67108;67109;67110;67111;67112;67113;67114;67115;67116 67113 7 FDPEFEK Unmodified 910.40725 0.40724861 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.516 21.962 2 0.006633 9408 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 94.662 94.662 2852000000 309250000 289520000 263740000 0 0 0 354840000 352090000 342270000 0 0 0 139160000 136620000 159200000 0 0 0 168340000 165380000 171560000 0 0 0 5934 1086 5786 109882;109883;109884;109885;109886;109887;109888;109889;109890;109891;109892;109893 67117;67118;67119;67120;67121;67122;67123;67124;67125;67126;67127;67128 67120 12 FDPSSGCLPK Unmodified 1106.5066 0.50664508 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.765 22.134 2 0.0022217 9397 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 80.165 73.27 387290000 32777000 30493000 28722000 5633500 4117700 5450400 30855000 27962000 27516000 12200000 9232500 9035100 22819000 22561000 18274000 0 0 0 31347000 28176000 31210000 0 3802500 5109800 5935 1909 5787 109894;109895;109896;109897;109898;109899;109900;109901;109902;109903;109904;109905;109906;109907;109908;109909;109910;109911;109912;109913;109914 67129;67130;67131;67132;67133;67134;67135;67136;67137;67138;67139;67140;67141;67142;67143;67144;67145;67146;67147 67138 19 FDPVGVAAK Unmodified 902.48617 0.48616764 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.45 22.094 2 0.021709 7039 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 62.464 56.077 451050000 31979000 27986000 23467000 191590 156680 0 20161000 21844000 0 0 0 0 8951800 9961400 9508100 79874000 77241000 82177000 20094000 20895000 16139000 424330 0 0 5936 1249 5788 109915;109916;109917;109918;109919;109920;109921;109922;109923;109924;109925;109926;109927;109928;109929;109930;109931 67148;67149;67150 67148 3 FDPVYVTHFK Unmodified 1251.6288 0.62880913 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.283 28.926 3 0.0019573 13332 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 59.542 55.897 363060000 49568000 50992000 40762000 0 0 0 43120000 41168000 47102000 0 0 0 13856000 13003000 12816000 0 0 0 16745000 14938000 18988000 0 0 0 5937 1557 5789 109932;109933;109934;109935;109936;109937;109938;109939;109940;109941;109942;109943 67151;67152;67153;67154;67155;67156;67157;67158;67159;67160;67161;67162 67159 12 FDQIEFAAFEMHILK Unmodified 1837.9073 0.90729217 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.627 51.351 3 0.00020091 25270 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.173 67.764 390210000 47069000 59727000 44116000 0 0 0 32467000 25223000 29409000 0 0 0 25767000 23971000 25716000 0 0 0 27169000 27687000 21885000 0 0 0 5938 1244 5790 109944;109945;109946;109947;109948;109949;109950;109951;109952;109953;109954;109955 67163;67164;67165;67166;67167;67168;67169;67170;67171;67172;67173;67174 67169 12 FDSLGNK Unmodified 779.38137 0.38136821 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 13.57 13.852 2 0.00078589 3453 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 144.9 115.09 54683000 0 7978200 9329200 0 0 0 0 0 0 0 0 0 0 0 0 14225000 11414000 11736000 0 0 0 0 0 0 5939 395 5791 109956;109957;109958;109959;109960 67175;67176;67177 67177 3 FDSQQTFTR Unmodified 1128.52 0.51998696 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.704 18.246 2 9.4115E-16 6596 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 226.54 222.43 428190000 0 45987000 50377000 0 0 0 53528000 0 56813000 0 0 0 28268000 24707000 23002000 4821500 5560700 7705600 40963000 42704000 43752000 0 0 0 5940 731 5792 109961;109962;109963;109964;109965;109966;109967;109968;109969;109970;109971;109972;109973 67178;67179;67180;67181;67182;67183;67184;67185;67186;67187 67185 4 FDSTDTQLR Unmodified 1081.504 0.50400254 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.596 18.076 2 2.1723E-08 6677 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 198.87 189.28 281870000 5387600 5554500 10084000 4635000 4331300 4674700 24113000 22395000 20640000 9276900 8175600 8870600 18324000 17206000 15804000 1485400 0 0 27047000 26725000 29675000 6616000 5269700 5583200 5941 997 5793 109974;109975;109976;109977;109978;109979;109980;109981;109982;109983;109984;109985;109986;109987;109988;109989;109990;109991;109992;109993;109994;109995 67188;67189;67190;67191;67192;67193;67194;67195;67196;67197;67198;67199;67200;67201;67202 67195 13 FDSVLNEAVK Unmodified 1120.5764 0.57643921 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.907 28.55 2 0.00023669 13203 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 117.89 100.5 518490000 148540000 140180000 125420000 0 0 0 14741000 15191000 24124000 0 0 0 8054200 6311000 7860500 0 0 0 9265300 8843200 9960700 0 0 0 5942 1160 5794 109996;109997;109998;109999;110000;110001;110002;110003;110004;110005;110006;110007 67203;67204;67205;67206;67207 67206 3 FDTIADNENLNISSK Unmodified 1679.8002 0.80024414 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.675 31.257 2 2.5529E-10 14766 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 188.06 182.03 159510000 5696600 4196800 4794500 0 867610 0 10324000 11987000 12968000 0 0 0 14175000 12663000 12191000 0 0 0 23190000 22769000 21898000 0 1785900 0 5943 1267 5795 110008;110009;110010;110011;110012;110013;110014;110015;110016;110017;110018;110019;110020;110021 67208;67209;67210;67211;67212;67213;67214;67215;67216 67212 9 FDVAVGANDAYGQYDENLVQR Unmodified 2343.0768 0.076753356 532 P0A9K9 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 1 42.57 40.702 2;3 8.0595E-53 19142 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 322.87 309.2 815400000 46906000 41215000 21749000 1944000 0 1571000 72750000 82652000 75284000 4296700 3950200 3493500 79088000 69047000 71808000 0 0 0 81938000 80455000 73962000 0 3291600 0 5944 532 5796 110022;110023;110024;110025;110026;110027;110028;110029;110030;110031;110032;110033;110034;110035;110036;110037;110038;110039;110040;110041;110042;110043;110044;110045;110046;110047;110048;110049;110050;110051;110052 67217;67218;67219;67220;67221;67222;67223;67224;67225;67226;67227;67228;67229;67230;67231;67232;67233;67234;67235;67236;67237;67238;67239 67237 23 FDVEAPWGSLSANVHK Unmodified 1755.858 0.8580338 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 41.698 40.081 2;3 8.4715E-11 14825 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 120.7 107.91 381530000 28027000 28118000 22952000 1424000 1061900 1365900 24613000 22172000 22742000 3094700 7472200 5903900 17370000 18802000 16972000 39207000 27765000 26083000 27473000 19483000 14352000 2888400 2183000 0 5945 222 5797 110053;110054;110055;110056;110057;110058;110059;110060;110061;110062;110063;110064;110065;110066;110067;110068;110069;110070;110071;110072;110073;110074;110075;110076 67240;67241;67242;67243 67240 4 FDVHTNAEQNLFEPIVR Unmodified 2028.0065 0.0064889465 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 1 1 2 2 2 2 2 1 41.803 40.106 2;3 9.6061E-50 19958 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 320.57 305.03 2801400000 178080000 175760000 164040000 11991000 10424000 9497300 186310000 193190000 161060000 75436000 77181000 64501000 176000000 174000000 158260000 54346000 41152000 43473000 251530000 254020000 243750000 33534000 29700000 34171000 5946 883 5798 110077;110078;110079;110080;110081;110082;110083;110084;110085;110086;110087;110088;110089;110090;110091;110092;110093;110094;110095;110096;110097;110098;110099;110100;110101;110102;110103;110104;110105;110106;110107;110108;110109;110110;110111;110112;110113;110114;110115;110116;110117;110118;110119;110120;110121;110122 67244;67245;67246;67247;67248;67249;67250;67251;67252;67253;67254;67255;67256;67257;67258;67259;67260;67261;67262;67263;67264;67265;67266;67267;67268;67269;67270;67271;67272;67273;67274;67275;67276;67277;67278;67279;67280;67281;67282 67256 39 FDVIVMDPPK Unmodified 1159.5947 0.59473181 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.156 38.532 2 0.0017797 18051 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 82.749 76.437 99387000 6964400 7300000 9209000 0 0 0 7203000 5110000 8932700 1799100 0 0 9014200 7127900 5891600 0 802070 0 11486000 7918800 10629000 0 0 0 5947 1787 5799 110123;110124;110125;110126;110127;110128;110129;110130;110131;110132;110133;110134;110135;110136 67283;67284;67285;67286;67287;67288;67289;67290 67290 2 FDVLQDPEVNSR Unmodified 1417.6838 0.68375782 1671 P64461 lsrG Autoinducer 2-degrading protein LsrG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 33.373 31.855 2 1.3206E-06 14991 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.23 132 155180000 49420000 46837000 45954000 0 0 0 3783300 3318800 3863100 0 0 0 0 0 0 0 0 0 0 0 2003900 0 0 0 5948 1671 5800 110137;110138;110139;110140;110141;110142;110143 67291;67292;67293 67293 3 FDVVLLGIDK Unmodified 1117.6383 0.63831118 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 49.525 48.156 1;2 0.0010085 23274 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 87.258 79.69 878070000 73532000 60032000 55373000 0 0 0 71677000 65962000 71137000 0 0 0 85115000 79631000 78744000 0 0 0 76178000 83043000 77643000 0 0 0 5949 253 5801 110144;110145;110146;110147;110148;110149;110150;110151;110152;110153;110154;110155;110156;110157;110158;110159;110160;110161;110162;110163;110164;110165;110166;110167 67294;67295;67296;67297;67298;67299;67300;67301;67302;67303;67304 67297 9 FDWVVEEGFAQIPSWHAAVER Unmodified 2472.1862 0.18624423 1234 P24173 rfaC Lipopolysaccharide heptosyltransferase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.285 51.875 3 0.0043712 21141 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 47.808 44.799 32554000 0 0 0 1196800 1458200 1279500 0 0 0 6487300 6692400 3837100 0 1907100 0 0 0 0 0 0 0 5223900 4471900 0 5950 1234 5802 110168;110169;110170;110171;110172;110173;110174;110175;110176 67305 67305 1 FEAAGFK Unmodified 768.38064 0.38063993 315 P0A763 ndk Nucleoside diphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.648 19.217 2 0.015808 7222 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 81.381 81.381 5562100000 775570000 739580000 655700000 1445800 1354300 2006300 342600000 296380000 310010000 0 0 0 172240000 162570000 161610000 0 0 0 650240000 675130000 615650000 0 0 0 5951 315 5803 110177;110178;110179;110180;110181;110182;110183;110184;110185;110186;110187;110188;110189;110190;110191 67306;67307;67308;67309;67310;67311;67312;67313;67314;67315;67316;67317 67311 9 FEAGGDSVSINMPTVPTSVFEGK Unmodified 2368.1257 0.12567738 1419 P33343 yehD Uncharacterized fimbrial-like protein YehD yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.237 49.961 2 1.9486E-35 24542 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 218.21 213.81 62274000 0 0 0 0 0 0 12927000 7622400 10451000 0 0 0 6096400 0 5683700 0 0 0 7394400 5337800 6760700 0 0 0 5952 1419 5804 110192;110193;110194;110195;110196;110197;110198;110199 67318 67318 1 FEAIAVR Unmodified 804.44939 0.4493882 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 22.503 22.05 2 0.0071951 9416 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 92.319 67.321 217570000 15522000 14034000 14565000 0 0 0 0 0 25843000 0 0 0 18606000 18461000 20865000 0 0 0 29232000 28959000 31480000 0 0 0 5953 505 5805 110200;110201;110202;110203;110204;110205;110206;110207;110208;110209 67319;67320;67321;67322;67323 67320 5 FEAKPANQLLTQPVK Unmodified 1682.9356 0.93555583 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 24.866 23.877 2;3 5.2077E-07 10871 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.487 84.002 467280000 33475000 38563000 34631000 0 0 0 53749000 54130000 56155000 0 0 0 34000000 30841000 28588000 0 0 0 34204000 33565000 35377000 0 0 0 5954 56 5806 110210;110211;110212;110213;110214;110215;110216;110217;110218;110219;110220;110221;110222;110223;110224;110225;110226;110227;110228;110229;110230;110231;110232;110233 67324;67325;67326;67327;67328;67329;67330;67331;67332;67333;67334;67335;67336;67337;67338;67339;67340 67326 17 FEALATCDALVQAHGALK Unmodified 1913.9669 0.96693232 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.238 33.643 3 1.2304E-09 16108 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.153 91.284 187840000 33129000 39242000 24640000 0 0 0 13924000 9354300 11088000 0 1799300 1909000 5340300 5834300 6956400 0 0 0 12429000 11326000 10866000 0 0 0 5955 106 5807 110234;110235;110236;110237;110238;110239;110240;110241;110242;110243;110244;110245;110246;110247 67341;67342;67343;67344;67345 67342 5 FEAVASR Unmodified 778.39735 0.39735263 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 1 2 2 2 2 1 1 1 12.925 13.663 1;2 0.0008573 4118 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143 118.81 802420000 106750000 63838000 65392000 4259800 4062000 2553900 68339000 70102000 70040000 3345600 2911400 3058700 45287000 37028000 44657000 0 0 0 70703000 64893000 66982000 2210700 3922600 2090800 5956 1146 5808 110248;110249;110250;110251;110252;110253;110254;110255;110256;110257;110258;110259;110260;110261;110262;110263;110264;110265;110266;110267;110268;110269;110270;110271;110272;110273;110274;110275;110276;110277;110278;110279 67346;67347;67348;67349;67350 67347 5 FEAYGWHVIR Unmodified 1276.6353 0.63529149 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 31.862 30.476 2;3 6.8316E-08 14365 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.73 163.53 11894000000 597400000 573810000 567240000 2196900 1316400 2314600 1224300000 1246400000 1285300000 0 0 0 926770000 937990000 936590000 0 0 0 1143500000 1200000000 1247400000 0 1050500 883990 5957 1299 5809 110280;110281;110282;110283;110284;110285;110286;110287;110288;110289;110290;110291;110292;110293;110294;110295;110296;110297;110298;110299;110300;110301;110302;110303;110304;110305;110306;110307;110308 67351;67352;67353;67354;67355;67356;67357;67358;67359;67360;67361;67362;67363;67364;67365;67366;67367;67368;67369;67370;67371;67372;67373;67374;67375;67376 67357 23 FEAYHWHVIHEIDGHDPQAVK Unmodified 2527.2033 0.20329127 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 3 3 3 1 1 3 3 3 3 2 1 1 3 2 25.905 24.792 3;4;5 5.4715E-22 11422 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 171.68 159.24 1046400000 221150000 163610000 170970000 549710 0 519930 134710000 119500000 113410000 0 0 0 18948000 17974000 11195000 0 0 0 14418000 32821000 26639000 0 0 0 5958 1423 5810 110309;110310;110311;110312;110313;110314;110315;110316;110317;110318;110319;110320;110321;110322;110323;110324;110325;110326;110327;110328;110329;110330;110331;110332;110333;110334;110335;110336;110337;110338;110339;110340 67377;67378;67379;67380;67381;67382;67383;67384;67385;67386;67387;67388;67389;67390 67380 14 FEDEFVR Unmodified 940.42905 0.42904669 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 25.037 24.183 2 0.0041051 10703 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.2 39.063 156100000 0 29490000 26557000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51770000 48284000 0 0 0 5959 303 5811 110341;110342;110343;110344 67391;67392;67393 67392 3 FEDFEIEGYDPHPGIK Unmodified 1891.8628 0.8628444 407 P0A884 thyA Thymidylate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.25 35.576 3 2.9653E-10 16596 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.35 97.56 1549700000 115260000 117570000 94209000 0 0 0 99539000 99853000 92507000 0 0 0 127750000 119960000 123070000 0 0 0 196290000 190430000 173230000 0 0 0 5960 407 5812 110345;110346;110347;110348;110349;110350;110351;110352;110353;110354;110355;110356 67394;67395;67396;67397;67398;67399;67400;67401;67402;67403;67404 67402 11 FEDLDDR Unmodified 908.38758 0.3875758 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.399 17.832 2 0.00070893 6680 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.94 114.47 584580000 50263000 59208000 52999000 0 0 0 53847000 52481000 42793000 2834100 2921700 2936500 35431000 36781000 36639000 665100 0 0 53875000 53463000 40746000 1882300 3004500 1811800 5961 1408 5813 110357;110358;110359;110360;110361;110362;110363;110364;110365;110366;110367;110368;110369;110370;110371;110372;110373;110374;110375 67405;67406;67407;67408;67409;67410;67411;67412;67413;67414 67405 6 FEDLDDRYDLRPSAWVTPK Unmodified 2322.1281 0.12806065 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 1 1 1 2 2 2 1 1 1 2 1 1 2 1 1 2 1 1 39.055 37.385 3;4 0.005219 14725 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 46.494 41.967 434110000 22312000 41098000 25515000 2619200 4283100 4792800 18097000 17955000 18444000 24233000 26387000 25822000 14471000 15534000 10884000 11405000 6322500 7063300 32512000 20693000 20935000 27902000 16171000 18662000 5962 1408 5814 110376;110377;110378;110379;110380;110381;110382;110383;110384;110385;110386;110387;110388;110389;110390;110391;110392;110393;110394;110395;110396;110397;110398;110399;110400;110401;110402;110403;110404;110405;110406;110407 67415;67416;67417;67418;67419;67420;67421;67422;67423;67424;67425;67426;67427 67420 13 FEDNALPWDSIDAATYVK Unmodified 2053.9633 0.96328673 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.298 51.05 2 4.3865E-05 24108 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 85.457 80.379 97908000 9617200 5880800 7615800 0 0 0 7961300 7648500 7744300 0 0 0 7385700 7152800 7615500 0 0 0 9121900 10311000 9853300 0 0 0 5963 1221 5815 110408;110409;110410;110411;110412;110413;110414;110415;110416;110417;110418;110419 67428 67428 1 FEEALTGWR Unmodified 1107.5349 0.53490874 760 P0AD01 dcuR Transcriptional regulatory protein DcuR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.85 32.656 2 7.3326E-05 11639 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 143.01 138.59 81156000 7226600 7347600 4317300 0 0 0 7650500 7504100 7277700 0 0 1469400 4361800 4984400 0 7868700 4954200 7341100 4672100 0 4180500 0 0 0 5964 760 5816 110420;110421;110422;110423;110424;110425;110426;110427;110428;110429;110430;110431;110432;110433 67429;67430;67431;67432;67433 67429 4 FEEDSGAQPDDITR Unmodified 1578.6798 0.67979466 1127 P16687 phnI Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 20.782 21.17 2 1.4303E-26 8426 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 237.68 233.66 41820000 0 0 0 0 0 0 3085600 0 0 0 0 0 4591700 2263800 2809500 0 0 0 10018000 10574000 8477200 0 0 0 5965 1127 5817 110434;110435;110436;110437;110438;110439;110440 67434;67435;67436;67437;67438 67435 5 FEEEGIFNR Unmodified 1139.5247 0.52473799 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.948 28.592 2 2.7985E-06 12689 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 176.66 150.06 1161800000 122610000 138060000 102130000 0 0 0 102930000 111240000 102430000 0 0 0 62527000 57145000 67589000 0 0 0 89758000 108260000 97143000 0 0 0 5966 1298 5818 110441;110442;110443;110444;110445;110446;110447;110448;110449;110450;110451;110452 67439;67440;67441;67442;67443;67444;67445;67446;67447;67448;67449;67450 67450 12 FEEHLQHEAQER Unmodified 1551.7066 0.70661853 1512 P39177 uspG Universal stress protein G yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 3 1 1 3 3 3 3 3 3 3 2 3 3 3 2 1 1 2 2 1 2 2 1 1 11.824 12.491 2;3;4 1.033E-30 3352 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 257.13 246.37 950600000 19112000 5916700 3157600 14586000 16857000 14278000 184040000 179960000 185340000 16444000 11003000 16344000 86246000 121540000 17816000 1960800 2385400 3575700 16267000 6751200 12328000 4310100 5367400 5024100 5967 1512 5819 110453;110454;110455;110456;110457;110458;110459;110460;110461;110462;110463;110464;110465;110466;110467;110468;110469;110470;110471;110472;110473;110474;110475;110476;110477;110478;110479;110480;110481;110482;110483;110484;110485;110486;110487;110488;110489;110490;110491;110492;110493;110494;110495;110496;110497;110498;110499;110500;110501;110502;110503;110504 67451;67452;67453;67454;67455;67456;67457;67458;67459;67460;67461 67456 9 FEELNSTEYQK Unmodified 1386.6303 0.63032527 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.138 21.318 2 1.5322E-19 8594 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 226.76 223.65 1957700000 206070000 210610000 177890000 1796100 2169600 2771000 130350000 133510000 128350000 0 3262000 3222600 144650000 132710000 147980000 1512300 0 0 176760000 174550000 172710000 2062200 2761800 2049200 5968 561 5820 110505;110506;110507;110508;110509;110510;110511;110512;110513;110514;110515;110516;110517;110518;110519;110520;110521;110522;110523;110524;110525 67462;67463;67464;67465;67466;67467;67468;67469;67470;67471;67472;67473;67474;67475 67464 13 FEELVQTR Unmodified 1020.524 0.52400971 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.268 22.008 2 0.00022739 9331 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 151.27 140.44 2442400000 229710000 219990000 171380000 0 0 4252900 233920000 228910000 224700000 33249000 33980000 32485000 125780000 128190000 149590000 0 1494000 0 192850000 215700000 194070000 8944400 7061100 6119800 5969 293 5821 110526;110527;110528;110529;110530;110531;110532;110533;110534;110535;110536;110537;110538;110539;110540;110541;110542;110543;110544;110545;110546 67476;67477;67478;67479;67480;67481;67482;67483;67484;67485;67486;67487;67488;67489;67490;67491 67480 13 FEEVVVEYPIGHAR Unmodified 1643.8308 0.83075641 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 32.484 31.312 2;3 5.7556E-11 14729 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 210.08 203.06 555570000 218890000 170240000 166440000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5970 1888 5822 110547;110548;110549;110550;110551;110552 67492;67493;67494;67495;67496;67497 67494 6 FEFFIGGR Unmodified 971.4865 0.48650199 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 1 1 1 1 1 44.258 42.782 2 6.3491E-05 20567 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 168.38 159.14 2946800000 201810000 182530000 160860000 0 0 0 380990000 372610000 342720000 0 0 0 196460000 185550000 194470000 0 0 0 247470000 242310000 239010000 0 0 0 5971 448;449 5823 110553;110554;110555;110556;110557;110558;110559;110560;110561;110562;110563;110564;110565;110566;110567 67498;67499;67500;67501;67502;67503;67504;67505;67506;67507;67508;67509;67510;67511;67512;67513;67514;67515 67509 17 FEGCYHGHADCLLVK Unmodified 1804.8025 0.80250953 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 3 3 2 1 2 3 3 3 2 2 2 3 3 3 2 2 2 3 3 4 2 2 2 19.576 19.884 2;3;4 7.2288E-12 8039 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.58 200.73 2978400000 199510000 216680000 200100000 4647200 3396300 4703800 291950000 262240000 223770000 19201000 18837000 20756000 199110000 224300000 212580000 7005900 6095300 6584600 276000000 250770000 291050000 14387000 12905000 11790000 5972 1227 5824 110568;110569;110570;110571;110572;110573;110574;110575;110576;110577;110578;110579;110580;110581;110582;110583;110584;110585;110586;110587;110588;110589;110590;110591;110592;110593;110594;110595;110596;110597;110598;110599;110600;110601;110602;110603;110604;110605;110606;110607;110608;110609;110610;110611;110612;110613;110614;110615;110616;110617;110618;110619;110620;110621;110622;110623;110624;110625;110626;110627 67516;67517;67518;67519;67520;67521;67522;67523;67524;67525;67526;67527;67528;67529;67530;67531;67532;67533;67534;67535;67536;67537;67538;67539;67540;67541;67542;67543;67544;67545;67546;67547;67548;67549;67550;67551;67552;67553;67554;67555;67556;67557;67558;67559;67560 67526 45 FEGNDTSK Unmodified 896.38758 0.3875758 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 8.9512 9.6649 2 0.069417 2140 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 55.676 50.851 5994000 805530 0 596530 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2319100 2272900 0 0 0 5973 486 5825 110628;110629;110630;110631 67561;67562 67562 2 FEGTALLR Unmodified 905.49707 0.49706667 922 P0AF98 lptF Lipopolysaccharide export system permease protein LptF yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 28.324 26.706 2 0.015838 9946 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 84.097 55.232 19934000 0 0 0 1424600 1449300 1395700 0 0 0 0 4669000 4215900 0 0 0 0 0 0 0 0 0 2209200 2470800 2099400 5974 922 5826 110632;110633;110634;110635;110636;110637;110638;110639 67563;67564;67565 67563 0 FEHIGDDTLEATMPVDSR Unmodified 2031.9208 0.92076999 1942 P77781 menI 1,4-dihydroxy-2-naphthoyl-CoA hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 1 1 1 2 34.981 33.538 2;3 1.504E-45 16001 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 267.17 258.35 375720000 70589000 56594000 55002000 0 0 0 23596000 16987000 25657000 0 0 0 21684000 17221000 20727000 0 0 0 20685000 21292000 25688000 0 0 0 5975 1942 5827 110640;110641;110642;110643;110644;110645;110646;110647;110648;110649;110650;110651;110652;110653;110654;110655;110656;110657;110658;110659 67566;67567;67568;67569;67570;67571;67572;67573;67574;67575;67576;67577;67578;67579 67574 14 FEHLAAIIDGVEDK Unmodified 1555.7882 0.7882229 229 P0A6C1 nfo Endonuclease 4 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 2 1 1 2 1 2 1 1 1 37.172 35.635 2;3 9.4759E-11 17104 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.52 156.76 482840000 41390000 50652000 40502000 0 0 0 40911000 38443000 43053000 0 620590 574550 28479000 25997000 32982000 6691200 5322200 6806200 44249000 32025000 40892000 1109000 1065700 1076800 5976 229 5828 110660;110661;110662;110663;110664;110665;110666;110667;110668;110669;110670;110671;110672;110673;110674;110675;110676;110677;110678;110679;110680;110681;110682;110683;110684;110685;110686;110687;110688;110689;110690;110691 67580;67581;67582;67583;67584;67585;67586;67587;67588;67589;67590 67588 11 FELDTTDGR Unmodified 1052.4775 0.47745344 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 23.321 22.757 2 0.0011824 7388 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 91.069 35.392 21636000 0 0 0 0 0 0 4980400 5223200 4541900 0 0 0 0 0 0 3035200 2013400 1841600 0 0 0 0 0 0 5977 395 5829 110692;110693;110694;110695;110696;110697 67591 67591 1 FELFYNK Unmodified 959.47527 0.4752686 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 35.798 34.175 2 0.00019738 16714 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.13 158.98 107870000 0 4661400 0 0 0 0 22042000 19263000 17797000 0 0 0 13833000 16735000 13538000 0 0 0 0 0 0 0 0 0 5978 1961 5830 110698;110699;110700;110701;110702;110703;110704 67592;67593;67594;67595;67596;67597 67593 6 FELKPTLEK Unmodified 1103.6227 0.62266112 1522 P39310 ytfB Uncharacterized protein YtfB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 2 1 2 1 2 1 1 1 1 1 1 22.769 22.179 2;3 0.040183 8891 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 73.573 45.399 93050000 4527200 5639700 3093300 0 1686800 0 21532000 5293200 24629000 0 1114200 0 3872000 2340000 3634700 0 0 471220 5186800 4119500 5910200 0 0 0 5979 1522 5831 110705;110706;110707;110708;110709;110710;110711;110712;110713;110714;110715;110716;110717;110718;110719;110720;110721;110722 67598;67599;67600 67600 3 FEMEQNLR Unmodified 1065.4913 0.49132937 16 CON__P35527 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 23.265 22.351 2 8.2926E-05 7935 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 164.53 160.78 95430000 0 0 0 1697500 1309900 1519600 0 0 0 19315000 20270000 29011000 0 0 0 0 0 0 0 0 0 8848700 7308400 6150300 + 5980 16 5832 110723;110724;110725;110726;110727;110728;110729;110730;110731 67601;67602;67603;67604;67605;67606 67601 6 FENFDINVLR Unmodified 1265.6404 0.64043645 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.995 43.311 2 1.3497E-05 21074 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.47 141.24 872320000 81757000 73544000 68244000 0 0 0 100730000 86585000 80076000 1392500 1031500 1031900 59703000 59152000 53802000 0 0 0 71969000 60770000 71743000 0 0 782110 5981 801 5833 110732;110733;110734;110735;110736;110737;110738;110739;110740;110741;110742;110743;110744;110745;110746;110747 67607;67608;67609;67610;67611;67612;67613;67614;67615;67616;67617;67618;67619 67614 13 FENMGAQMVK Unmodified 1153.526 0.52600031 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 22.827 22.33 2 9.3701E-05 9864 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 131.06 125.28 1079300000 109540000 112150000 103140000 0 0 0 71136000 82225000 69251000 0 0 0 85029000 68989000 73577000 0 0 0 89383000 111020000 103880000 0 0 0 5982 240 5834 110748;110749;110750;110751;110752;110753;110754;110755;110756;110757;110758;110759;110760 67620;67621;67622;67623;67624;67625;67626;67627;67628;67629 67621 9 FENPYLKDDVER Unmodified 1523.7256 0.72562264 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 24.957 23.968 2;3 2.7287E-05 10881 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 125.72 118.15 761260000 59250000 52834000 57561000 0 0 0 100010000 111870000 104820000 0 0 0 53574000 46412000 45252000 0 0 0 45969000 42970000 40737000 0 0 0 5983 214 5835 110761;110762;110763;110764;110765;110766;110767;110768;110769;110770;110771;110772;110773;110774;110775;110776;110777;110778;110779;110780;110781;110782;110783;110784 67630;67631;67632;67633;67634;67635;67636;67637;67638;67639;67640;67641;67642;67643;67644 67635 11 FEPIRPYEFTGR Unmodified 1510.7569 0.75686319 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 31.979 30.622 2;3 1.4245E-06 14422 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.42 130.02 2080500000 194020000 179670000 181570000 0 0 0 168260000 168160000 167670000 0 0 0 122640000 122630000 110030000 0 0 0 232370000 238850000 192660000 0 1950600 0 5984 1143 5836 110785;110786;110787;110788;110789;110790;110791;110792;110793;110794;110795;110796;110797;110798;110799;110800;110801;110802;110803;110804;110805;110806;110807;110808;110809 67645;67646;67647;67648;67649;67650;67651;67652;67653;67654;67655;67656;67657;67658;67659;67660;67661;67662;67663;67664;67665;67666;67667;67668 67651 24 FEPLNATANQDYQR Unmodified 1665.7747 0.7746981 1051 P10100 rlpA Rare lipoprotein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.722 25.58 2 7.3529E-08 11512 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 137.89 134.11 78836000 6604400 6667100 5065200 1598700 0 1256700 0 4572400 0 3594500 3113000 3331600 4238100 4932700 3704100 0 830230 902410 10251000 6314500 7321200 2486800 0 2052000 5985 1051 5837 110810;110811;110812;110813;110814;110815;110816;110817;110818;110819;110820;110821;110822;110823;110824;110825;110826;110827;110828 67669;67670;67671;67672;67673 67673 4 FEPQDIPLDIVYEDEDIIIINKPR Unmodified 2883.4906 0.4905909 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 54.766 53.307 3 8.9474E-07 26531 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.66 100.55 103720000 23368000 21264000 18605000 0 0 0 7013200 0 2022100 0 0 0 0 0 9029600 0 0 0 14412000 8004200 0 0 0 0 5986 1429 5838 110829;110830;110831;110832;110833;110834;110835;110836 67674 67674 1 FEQGHPVALNGK Unmodified 1295.6622 0.66223452 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 13.365 14.344 2;3 0.00071456 3332 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 69.721 64.816 49224000 0 11685000 6467300 5374100 6003800 4110100 0 0 0 0 0 0 4162600 3057400 2277200 0 0 0 0 1574300 4512200 0 0 0 5987 235 5839 110837;110838;110839;110840;110841;110842;110843;110844;110845;110846 67675;67676;67677;67678 67675 4 FEQTYFSTFK Unmodified 1296.6027 0.60265396 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.956 34.374 2 1.9527E-06 16274 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.37 153.2 1208600000 436960000 380210000 344080000 0 1196100 0 4286700 3447900 3265900 0 0 0 4682800 0 4239100 0 0 0 6885100 12194000 7153000 0 0 0 5988 1305 5840 110847;110848;110849;110850;110851;110852;110853;110854;110855;110856;110857;110858 67679;67680;67681;67682;67683;67684 67683 4 FESEVYILSK Unmodified 1213.6231 0.62305505 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 2 3 2 1 1 1 1 1 2 1 2 1 1 2 2 2 1 1 2 35.418 33.899 2 0.00013066 17340 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.65 88.609 34512000000 2693700000 2465200000 2188000000 45066000 47331000 49471000 3230700000 3239200000 3328600000 15969000 17585000 17153000 2503900000 2299900000 2265000000 28494000 18539000 18167000 3362200000 3406000000 3223500000 15402000 15944000 17656000 5989 1048 5841 110859;110860;110861;110862;110863;110864;110865;110866;110867;110868;110869;110870;110871;110872;110873;110874;110875;110876;110877;110878;110879;110880;110881;110882;110883;110884;110885;110886;110887;110888;110889;110890;110891;110892;110893;110894 67685;67686;67687;67688;67689;67690;67691;67692;67693;67694;67695;67696;67697;67698;67699;67700;67701;67702;67703;67704;67705;67706;67707;67708;67709;67710;67711;67712;67713;67714;67715;67716;67717;67718;67719;67720;67721;67722;67723;67724;67725;67726;67727;67728;67729;67730;67731;67732;67733;67734;67735;67736;67737;67738;67739;67740;67741;67742;67743 67690 58 FESEVYILSKDEGGR Unmodified 1727.8366 0.83662965 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 29.5 28.378 3 1.4409E-05 9652 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 75.961 69.663 109430000 0 0 0 25486000 20559000 22835000 0 4130300 0 0 0 0 0 0 0 6680100 6302000 7684800 1815600 0 0 7540600 0 6400800 5990 1048 5842 110895;110896;110897;110898;110899;110900;110901;110902;110903;110904 67744;67745;67746;67747;67748;67749;67750 67744 7 FESWAER Unmodified 923.41373 0.41373097 471 P0A8Y1 yjjG Pyrimidine 5'-nucleotidase YjjG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 20.45 20.861 2 0.046267 8213 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.116 75.263 111440000 0 6780900 3583200 0 0 0 5929100 4097000 5169300 0 0 0 11757000 10065000 10144000 0 0 0 15194000 18849000 19874000 0 0 0 5991 471 5843 110905;110906;110907;110908;110909;110910;110911;110912;110913;110914;110915 67751 67751 0 FETEIIFDHINK Unmodified 1504.7562 0.75619449 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 37.699 36.02 2;3 2.1334E-12 17466 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 240.38 237.83 1374800000 167010000 164220000 148340000 496800 465970 494720 95940000 94899000 91856000 0 0 0 88882000 76186000 71698000 0 0 0 119560000 118650000 136100000 0 0 0 5992 543 5844 110916;110917;110918;110919;110920;110921;110922;110923;110924;110925;110926;110927;110928;110929;110930;110931;110932;110933;110934;110935;110936;110937;110938;110939;110940;110941;110942 67752;67753;67754;67755;67756;67757;67758;67759;67760;67761;67762;67763;67764;67765;67766;67767;67768;67769;67770 67759 19 FETPLMWIDK Unmodified 1278.6318 0.63184559 1939 P77756 queC 7-cyano-7-deazaguanine synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.629 50.381 2 0.00040242 24529 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 105.4 94.033 600600000 45561000 43804000 40816000 0 0 0 47429000 40092000 49761000 0 0 0 56688000 49153000 49610000 0 0 0 58721000 56519000 62448000 0 0 0 5993 1939 5845 110943;110944;110945;110946;110947;110948;110949;110950;110951;110952;110953;110954 67771;67772;67773;67774 67772 4 FEVEKDTIGDIIILPR Unmodified 1857.0248 0.024764773 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.466 47.067 3 8.2272E-07 18764 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 103.79 102.22 155430000 7071400 8530700 5373700 1038400 2200900 1462000 13336000 12066000 13478000 0 1890800 2576400 12936000 10283000 9428000 0 0 0 17062000 17824000 15124000 0 1922700 1826600 5994 324 5846 110955;110956;110957;110958;110959;110960;110961;110962;110963;110964;110965;110966;110967;110968;110969;110970;110971;110972;110973 67775 67775 1 FEVGEGIEK Unmodified 1006.4971 0.49712625 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.65 22.845 2 0.00021821 10004 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 124.98 100.06 17375000000 1259200000 1269600000 1200200000 2506100 3324900 3612900 1391400000 1383300000 1295400000 12765000 10447000 11743000 1411400000 1346100000 1366300000 5607000 3925500 2938600 1644800000 1827900000 1908500000 6689600 3708700 3619700 5995 267 5847 110974;110975;110976;110977;110978;110979;110980;110981;110982;110983;110984;110985;110986;110987;110988;110989;110990;110991;110992;110993;110994;110995;110996;110997;110998 67776;67777;67778;67779;67780;67781;67782;67783;67784;67785;67786;67787;67788;67789;67790;67791;67792;67793;67794;67795;67796;67797;67798;67799;67800;67801;67802;67803;67804;67805;67806;67807;67808 67787 33 FEVGEGIEKVETDFAAEVAAMSK Unmodified 2456.1781 0.17810688 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 54.952 53.666 3 1.0752E-10 20471 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 131.43 128.85 1228200000 59733000 71409000 54815000 14367000 15829000 14024000 76669000 58820000 59926000 22009000 21864000 16662000 85844000 68968000 87744000 32490000 30921000 42645000 108810000 127040000 115030000 18973000 14372000 9205000 5996 267 5848 110999;111000;111001;111002;111003;111004;111005;111006;111007;111008;111009;111010;111011;111012;111013;111014;111015;111016;111017;111018;111019;111020;111021;111022;111023;111024;111025 67809;67810;67811;67812;67813;67814;67815;67816;67817;67818;67819;67820;67821;67822;67823;67824;67825;67826;67827;67828;67829 67809 21 FEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQR Unmodified 3419.7797 0.77973048 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 2 2 1 1 2 1 2 1 1 2 32.282 30.783 3;4 2.683E-14 12008 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 132.6 131.03 148880000 10587000 17909000 20767000 0 0 0 0 8224900 11566000 22819000 11493000 0 11969000 0 7107700 0 0 0 0 13953000 12487000 0 0 0 5997 78 5849 111026;111027;111028;111029;111030;111031;111032;111033;111034;111035;111036;111037;111038;111039;111040;111041 67830;67831;67832 67831 3 FEVIVLDVLHR Unmodified 1338.766 0.76597131 1241 P24202 mrr Mrr restriction system protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 1 2 2 2 2 48.388 47.07 2;3 1.1684E-07 23447 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.07 137.94 293960000 24414000 21607000 18388000 0 0 0 33092000 32089000 23176000 0 0 0 20010000 14872000 14093000 0 0 0 32484000 32316000 27417000 0 0 0 5998 1241 5850 111042;111043;111044;111045;111046;111047;111048;111049;111050;111051;111052;111053;111054;111055;111056;111057;111058;111059;111060;111061;111062;111063 67833;67834;67835;67836;67837;67838;67839;67840;67841;67842;67843;67844;67845 67833 13 FEVMVPGGTLR Unmodified 1204.6274 0.62742892 1389 P32144 yihW Uncharacterized HTH-type transcriptional regulator YihW yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 38.881 37.364 2 0.0015451 18230 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.584 78.531 46845000 9858400 8229800 11028000 0 0 0 0 0 0 0 0 0 2058500 2816800 0 0 0 0 4763600 3699400 4390300 0 0 0 5999 1389 5851 111064;111065;111066;111067;111068;111069;111070;111071 67846 67846 1 FEVWISVDTSKPEVIR Unmodified 1904.0044 0.0043636815 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.625 42.11 3 0.0072997 20707 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 59.862 56.884 92604000 5877100 6159300 5452400 0 0 0 10481000 10873000 11999000 0 0 0 4456600 5313500 5043200 0 0 0 10063000 8481800 8402900 0 0 0 6000 691 5852 111072;111073;111074;111075;111076;111077;111078;111079;111080;111081;111082;111083 67847;67848;67849;67850;67851;67852;67853;67854 67850 0 FEYWAMPHK Unmodified 1207.5485 0.54845032 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 1 29.731 28.376 2;3 0.004322 13143 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 56.432 56.432 534790000 123500000 142080000 116770000 0 0 0 44792000 40154000 38092000 0 0 0 3921600 3095300 3193900 0 0 0 6420600 6101600 6664200 0 0 0 6001 1373 5853 111084;111085;111086;111087;111088;111089;111090;111091;111092;111093;111094;111095;111096;111097;111098;111099;111100;111101 67855;67856;67857;67858;67859;67860;67861;67862;67863;67864;67865;67866 67860 10 FEYWAMPHKDEK Unmodified 1579.7129 0.71294946 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 3 3 3 1 1 3 3 3 2 1 1 3 3 3 23.248 22.489 2;3;4 8.4664E-07 9564 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 163.66 157.13 2713400000 745230000 653240000 695650000 0 792520 547530 159490000 160790000 151280000 0 0 0 13438000 9413400 8323500 0 0 0 32554000 43511000 39161000 0 0 0 6002 1373 5854 111102;111103;111104;111105;111106;111107;111108;111109;111110;111111;111112;111113;111114;111115;111116;111117;111118;111119;111120;111121;111122;111123;111124;111125;111126;111127;111128;111129;111130;111131;111132;111133;111134 67867;67868;67869;67870;67871;67872;67873;67874;67875;67876;67877;67878 67875 12 FFAALAR Unmodified 794.44391 0.44390889 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.223 28.012 2 0.034146 13353 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.025 84.025 559920000 80445000 76226000 81976000 1348900 1325500 1398900 19704000 19203000 18463000 0 0 0 27782000 24265000 29160000 0 323630 0 56005000 59598000 62696000 0 0 0 6003 34 5855 111135;111136;111137;111138;111139;111140;111141;111142;111143;111144;111145;111146;111147;111148;111149;111150 67879;67880;67881;67882 67880 0 FFADMHR Unmodified 922.41196 0.41195684 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.956 18.554 2 0.0026472 6527 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 111.28 106.45 356940000 25495000 28225000 20242000 0 0 0 33389000 34508000 34344000 0 0 0 26122000 23459000 18722000 0 0 0 35468000 38945000 38025000 0 0 0 6004 1505 5856 111151;111152;111153;111154;111155;111156;111157;111158;111159;111160;111161;111162 67883;67884;67885;67886;67887;67888;67889;67890;67891;67892;67893;67894 67893 12 FFAENGK Unmodified 811.38645 0.38645359 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.83 15.421 2 0.077273 4301 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 64.523 57.11 66850000 2403300 0 0 2269000 2080400 1741000 0 4460100 4725500 5537100 5751200 4968200 3429300 4185100 3892000 0 0 743180 6457900 5796000 4056400 2189000 2165900 0 6005 1876 5857 111163;111164;111165;111166;111167;111168;111169;111170;111171;111172;111173;111174;111175;111176;111177;111178;111179;111180 67895 67895 0 FFAGAAR Unmodified 738.38131 0.38130863 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.908 16.724 2 0.0013909 5763 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.84 130.84 947720000 276290000 268170000 246020000 0 0 0 28816000 28048000 32898000 0 0 0 7937600 8392300 8176500 0 0 0 15153000 14670000 13142000 0 0 0 6006 1925 5858 111181;111182;111183;111184;111185;111186;111187;111188;111189;111190;111191;111192 67896;67897;67898;67899;67900;67901;67902;67903;67904;67905;67906 67902 11 FFAMIIK Unmodified 868.48808 0.48808189 1972 Q47146 fadE Acyl-coenzyme A dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 41.315 39.735 2 0.019434 19447 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.72 76.211 12070000 3213400 3984900 2695900 680870 687900 807080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6007 1972 5859 111193;111194;111195;111196;111197;111198 67907;67908 67907 2 FFCDIVFPLSK Unmodified 1371.6897 0.68969482 1063 P10906 ugpE sn-glycerol-3-phosphate transport system permease protein UgpE yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.049 51.625 2 0.00015869 25201 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 109.79 106.37 152480000 0 0 0 0 0 0 0 6744500 10870000 2793500 2701300 3521900 11460000 12083000 9935200 0 0 0 30279000 27413000 28275000 0 6405800 0 6008 1063 5860 111199;111200;111201;111202;111203;111204;111205;111206;111207;111208;111209;111210 67909;67910;67911;67912;67913;67914;67915 67910 6 FFDDLTR Unmodified 912.43413 0.43413207 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.696 31.298 2 7.0406E-05 11950 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 175.93 159.78 359140000 19303000 16092000 16795000 4936600 5413600 5994100 19794000 18076000 20126000 26475000 19873000 17004000 13879000 11995000 11535000 5591000 3836700 4355800 27017000 25720000 27378000 10285000 13771000 13893000 6009 190 5861 111211;111212;111213;111214;111215;111216;111217;111218;111219;111220;111221;111222;111223;111224;111225;111226;111227;111228;111229;111230;111231;111232;111233;111234 67916;67917;67918;67919;67920;67921;67922;67923;67924;67925;67926;67927 67918 12 FFDNDVNQVPK Unmodified 1321.6303 0.63026569 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.331 27.084 2 0.00011825 12425 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.37 111.76 1592600000 232570000 184760000 175750000 0 0 0 170480000 155660000 150920000 0 0 0 74667000 65499000 71458000 0 0 0 106320000 104120000 100440000 0 0 0 6010 313 5862 111235;111236;111237;111238;111239;111240;111241;111242;111243;111244;111245;111246 67928;67929;67930;67931;67932;67933;67934;67935;67936;67937;67938 67934 11 FFDWAYK Unmodified 975.44905 0.44905385 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 41.539 39.924 2 0.011149 19445 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 86.086 80.607 4486300000 22066000 22547000 15680000 3411900 3521800 2808900 400150000 370000000 380310000 11015000 9010800 7437600 572970000 519920000 502770000 9848100 3577200 4968400 485170000 559200000 541510000 12533000 12707000 13213000 6011 994 5863 111247;111248;111249;111250;111251;111252;111253;111254;111255;111256;111257;111258;111259;111260;111261;111262;111263;111264;111265;111266;111267;111268;111269;111270;111271 67939;67940;67941;67942;67943;67944;67945;67946;67947;67948;67949;67950;67951;67952;67953;67954;67955;67956;67957;67958;67959;67960;67961;67962 67946 24 FFELYDENNELR Unmodified 1587.7205 0.72053726 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 43.17 41.649 2;3 4.2484E-24 20542 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 246.41 243.09 1077000000 133980000 122290000 108270000 681170 548370 556520 94445000 79056000 88753000 0 0 0 60255000 55599000 51053000 0 0 0 100680000 83524000 97300000 0 0 0 6012 1298 5864 111272;111273;111274;111275;111276;111277;111278;111279;111280;111281;111282;111283;111284;111285;111286;111287 67963;67964;67965;67966;67967;67968;67969;67970;67971;67972;67973;67974;67975 67965 12 FFETQSSK Unmodified 972.45526 0.45526144 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.147 15.677 2 0.0018692 4906 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 105.25 93.344 192290000 20760000 0 0 7546200 7211300 8093900 0 15813000 0 8979500 9106300 9935900 19294000 10613000 13168000 4379700 0 3620400 22309000 0 18797000 4563300 3506300 4590100 6013 1829 5865 111288;111289;111290;111291;111292;111293;111294;111295;111296;111297;111298;111299;111300;111301;111302;111303;111304;111305 67976;67977;67978;67979;67980;67981;67982;67983;67984;67985;67986;67987 67986 10 FFETVNPLK Unmodified 1093.5808 0.5807963 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.602 35.054 2 0.00084346 16731 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 112.17 101.76 480830000 15547000 10451000 12050000 5711700 5901500 5546400 25448000 25049000 22261000 22997000 19597000 17753000 30895000 28690000 27673000 7456200 3863300 3293800 44533000 48236000 49013000 15776000 14978000 18107000 6014 844 5866 111306;111307;111308;111309;111310;111311;111312;111313;111314;111315;111316;111317;111318;111319;111320;111321;111322;111323;111324;111325;111326;111327;111328;111329 67988;67989;67990;67991;67992;67993;67994;67995;67996;67997;67998;67999;68000;68001;68002;68003;68004;68005;68006;68007;68008 68000 21 FFETVTPIKPDATFVTQR Unmodified 2096.0942 0.094241321 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.701 39.918 3 8.6494E-14 19851 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.67 139.2 483440000 24498000 20526000 18156000 6901600 8374900 8265700 33607000 44735000 35562000 35593000 36328000 26693000 23105000 24089000 22337000 0 4346600 0 25792000 26586000 28335000 10517000 8790100 10298000 6015 189 5867 111330;111331;111332;111333;111334;111335;111336;111337;111338;111339;111340;111341;111342;111343;111344;111345;111346;111347;111348;111349;111350;111351 68009;68010;68011;68012;68013;68014;68015;68016;68017;68018;68019;68020;68021;68022;68023;68024 68012 16 FFFDCLAVCVNVKPAPEVR Unmodified 2267.1231 0.12311538 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1 1 1 1 1 5 4 5 1 1 1 1 50.154 49.456 2;3 6.7851E-23 17678 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 242.43 235.4 2041000000 33879000 26930000 25320000 5134000 0 0 23012000 18939000 22283000 0 0 6044600 0 12896000 16068000 653440000 562380000 570750000 18857000 21042000 17540000 6497900 0 0 6016 1247 5868 111352;111353;111354;111355;111356;111357;111358;111359;111360;111361;111362;111363;111364;111365;111366;111367;111368;111369;111370;111371;111372;111373;111374;111375;111376;111377;111378;111379;111380 68025;68026;68027;68028;68029;68030;68031;68032;68033;68034;68035;68036;68037;68038;68039;68040;68041;68042;68043;68044;68045;68046;68047 68036 17 FFFMSPYR Unmodified 1093.5055 0.50552287 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 45.653 44.132 2 0.00028277 21483 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 148.07 144.13 84497000 0 0 0 0 0 0 4892300 3157000 4222700 0 0 0 6631500 5780600 4650900 0 0 0 16494000 20948000 17130000 589790 0 0 6017 865 5869 111381;111382;111383;111384;111385;111386;111387;111388;111389;111390 68048;68049;68050;68051;68052 68050 4 FFGHGELR Unmodified 961.477 0.47699993 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 17.032 17.292 2 0.0010424 5122 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 112.37 89.35 78847000 0 0 0 2570400 0 0 0 0 0 13546000 15489000 16490000 0 0 0 0 0 0 10704000 0 9742900 4582700 2493400 3228900 6018 1691 5870 111391;111392;111393;111394;111395;111396;111397;111398;111399;111400;111401 68053;68054;68055;68056;68057;68058;68059;68060 68054 8 FFGYTSR Unmodified 876.413 0.41300269 332 P0A7D1 pth Peptidyl-tRNA hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.586 23.663 2 0.00022358 10229 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 164.1 151.67 166640000 14359000 19884000 13770000 0 0 0 11954000 13816000 9689100 0 0 0 13969000 10726000 11231000 0 470800 0 16218000 15159000 15397000 0 0 0 6019 332 5871 111402;111403;111404;111405;111406;111407;111408;111409;111410;111411;111412;111413;111414 68061;68062;68063;68064;68065;68066;68067;68068;68069;68070;68071;68072 68069 12 FFHMMLDEGVYLAPSAFEAGFMSVAHSMEDINNTIDAAR Unmodified 4333.9581 0.95810683 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 54.99 53.641 3 0.16418 19704 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 1.1781 0.013513 146360000 0 0 0 42356000 43663000 31841000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10467000 18031000 0 6020 1227 5872 111415;111416;111417;111418;111419;111420 68073;68074 68073 2 FFINGIR Unmodified 865.48102 0.48102268 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.684 33.236 2 0.0023513 16210 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.82 108.28 196670000 7212700 6781800 6019700 0 0 0 27582000 27232000 24883000 0 0 0 13258000 13900000 14409000 0 0 0 18930000 18721000 17739000 0 0 0 6021 167 5873 111421;111422;111423;111424;111425;111426;111427;111428;111429;111430;111431;111432 68075 68075 1 FFINPTGR Unmodified 950.4974 0.49740102 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.842 30.25 2 0.0006403 14263 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 129.4 117.2 4774600000 414050000 339630000 338680000 12587000 10224000 11362000 597620000 597770000 601850000 43436000 35651000 31923000 231260000 267110000 244140000 0 0 0 340630000 327600000 313420000 5438200 5315200 4946500 6022 388 5874 111433;111434;111435;111436;111437;111438;111439;111440;111441;111442;111443;111444;111445;111446;111447;111448;111449;111450;111451;111452;111453 68076;68077;68078;68079;68080;68081;68082;68083;68084;68085;68086;68087;68088;68089;68090;68091;68092;68093;68094;68095 68085 19 FFITGTDTSVGK Unmodified 1271.6398 0.63976774 237 P0A6E9 bioD2 ATP-dependent dethiobiotin synthetase BioD 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.295 31.738 2 3.377E-05 15457 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 112.36 112.36 569440000 15555000 14713000 14493000 349840 555150 0 78378000 77598000 72122000 3179700 3549200 2862800 70086000 57927000 53184000 1350500 0 0 34150000 36170000 32241000 0 0 973870 6023 237 5875 111454;111455;111456;111457;111458;111459;111460;111461;111462;111463;111464;111465;111466;111467;111468;111469;111470;111471;111472 68096;68097;68098;68099;68100;68101;68102;68103;68104 68099 9 FFNDALAATSEHAR Unmodified 1548.7321 0.732105 1613 P56258 wecF TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 26.337 25.445 2;3 0.0071684 10913 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 50.155 47.288 150330000 4537700 0 5800900 1036000 1361300 1214100 9846900 12284000 8346800 0 0 0 10995000 7892400 7612800 19547000 4500600 6664800 8605200 12757000 12348000 4888900 5837600 4250800 6024 1613 5876 111473;111474;111475;111476;111477;111478;111479;111480;111481;111482;111483;111484;111485;111486;111487;111488;111489;111490;111491;111492;111493;111494 68105;68106;68107 68107 3 FFPAEANGGVK Unmodified 1135.5662 0.56620887 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 23.91 22.898 2 0.00045547 9867 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 99.442 77.205 300380000 0 0 0 0 0 0 88337000 73766000 74621000 0 0 0 0 0 0 0 0 0 0 63652000 0 0 0 0 6025 490 5877 111495;111496;111497;111498;111499;111500;111501;111502;111503;111504;111505 68108;68109;68110;68111;68112;68113;68114;68115;68116;68117;68118 68112 11 FFPGYVLVQMVMNDASWHLVR Unmodified 2508.2446 0.2446275 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 2 2 2 3 3 3 56.111 55.042 3;4 6.6101E-28 21941 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 186.94 180.85 5929200000 0 0 0 0 0 0 0 0 0 998850000 1141600000 937870000 0 0 247560 531840000 615000000 534090000 0 0 0 381830000 379990000 407850000 6026 936 5878 111506;111507;111508;111509;111510;111511;111512;111513;111514;111515;111516;111517;111518;111519;111520;111521;111522;111523;111524;111525;111526;111527;111528;111529;111530 68119;68120;68121;68122;68123;68124;68125;68126;68127;68128;68129 68119 11 FFPGYVLVQMVMNDASWHLVR Oxidation (M) 2524.2395 0.23954213 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 1 55.579 54.109 3;4 3.9257E-15 21756 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 137.05 132.98 733100000 0 0 0 0 0 0 0 0 0 200800000 151200000 215610000 0 0 0 0 0 0 0 0 0 50289000 62411000 52789000 6027 936 5878 111531;111532;111533;111534;111535;111536;111537;111538;111539;111540;111541 68130;68131;68132;68133;68134;68135;68136;68137 68136 425;426 6 FFPQFNDR Unmodified 1069.4981 0.49812931 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.647 32.207 2 0.027319 14790 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 64.567 54.979 100080000 6457900 7805000 5478600 0 0 0 9698400 10098000 10002000 0 0 0 7401700 6694300 6044900 0 0 0 8904900 11132000 10367000 0 0 0 6028 505 5879 111542;111543;111544;111545;111546;111547;111548;111549;111550;111551;111552;111553 68138;68139;68140;68141 68139 4 FFQQPALR Unmodified 1005.5396 0.53960019 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 26.352 25.142 2 0.00090921 11232 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.01 99.975 485600000 75323000 63659000 73770000 0 0 0 69168000 86131000 77288000 0 0 0 0 0 0 0 0 0 0 40265000 0 0 0 0 6029 278 5880 111554;111555;111556;111557;111558;111559;111560;111561 68142;68143;68144;68145;68146;68147;68148 68148 7 FFQVYDPAYYDSK Unmodified 1641.7351 0.73512469 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.859 41.28 2 3.6917E-14 20378 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 151.15 150.54 656640000 0 0 0 13765000 16556000 15504000 93739000 82610000 0 25501000 23240000 21322000 78957000 0 90566000 7227400 6557300 4811100 0 0 113360000 21244000 19971000 21708000 6030 1427 5881 111562;111563;111564;111565;111566;111567;111568;111569;111570;111571;111572;111573;111574;111575;111576;111577;111578;111579 68149;68150;68151;68152;68153;68154;68155;68156;68157;68158;68159;68160;68161;68162;68163;68164;68165;68166 68157 18 FFRPHFTDR Unmodified 1221.6043 0.60432571 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 1 2 2 2 2 17.896 18.325 2;3 0.00016016 5497 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 103.7 87.447 454750000 8220500 8054800 4728700 8072500 9811900 10807000 39312000 44873000 43951000 45278000 46932000 39357000 13282000 14562000 10368000 3794100 3843600 3923400 21178000 17832000 19726000 14676000 10354000 11811000 6031 122 5882 111580;111581;111582;111583;111584;111585;111586;111587;111588;111589;111590;111591;111592;111593;111594;111595;111596;111597;111598;111599;111600;111601;111602;111603;111604;111605;111606;111607;111608;111609;111610;111611;111612;111613;111614;111615;111616;111617;111618;111619 68167;68168;68169;68170;68171;68172;68173;68174;68175;68176;68177;68178;68179;68180;68181 68172 15 FFSDIGGR Unmodified 897.43447 0.43446642 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.577 25.516 2 6.9182E-05 11053 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 167.25 151.1 628880000 79393000 88860000 68715000 0 0 0 63823000 56277000 59455000 0 0 0 34606000 33928000 36302000 0 0 0 36273000 33641000 37606000 0 0 0 6032 1341 5883 111620;111621;111622;111623;111624;111625;111626;111627;111628;111629;111630;111631 68182;68183;68184;68185;68186;68187;68188;68189 68187 8 FFSFEPGAK Unmodified 1028.4967 0.49673232 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.952 33.496 2 0.0057954 15914 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.208 69.815 117890000 9355500 8935900 8805500 0 0 0 8052000 7101600 7097800 0 0 0 8249800 10210000 9122900 0 0 0 13196000 15782000 11984000 0 0 0 6033 1171 5884 111632;111633;111634;111635;111636;111637;111638;111639;111640;111641;111642;111643 68190;68191;68192;68193;68194;68195;68196 68192 6 FFSIDGTK Unmodified 913.45453 0.45453316 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.504 28.586 2 0.0021516 12735 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 105.04 86.235 653870000 0 0 0 0 0 0 162830000 161630000 163660000 560870 0 554160 0 0 0 0 0 0 164630000 0 0 0 0 0 6034 1360 5885 111644;111645;111646;111647;111648;111649;111650;111651;111652;111653;111654;111655;111656;111657 68197;68198;68199;68200;68201;68202;68203;68204;68205 68204 9 FFSMDFSR Unmodified 1035.4484 0.44840192 831 P0AE37 astA Arginine N-succinyltransferase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 40.485 39.045 2 0.00053653 19098 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.79 128.04 64870000 22071000 19692000 23107000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6035 831 5886 111658;111659;111660 68206 68206 1 FFSQPLLLGK Unmodified 1148.6594 0.65938097 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.143 41.348 2 0.0003733 20153 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.29 95.654 11516000000 1570700000 1448800000 1331800000 6468100 5793000 5534300 1000400000 923690000 876320000 1944300 1624500 1408900 474070000 456520000 439190000 0 0 0 1028000000 984590000 955000000 1731100 1418900 1344100 6036 1642 5887 111661;111662;111663;111664;111665;111666;111667;111668;111669;111670;111671;111672;111673;111674;111675;111676;111677;111678;111679;111680;111681 68207;68208;68209;68210;68211;68212;68213;68214;68215;68216;68217;68218;68219;68220;68221;68222;68223;68224;68225;68226;68227;68228;68229 68219 23 FFSYDVER Unmodified 1061.4818 0.48181054 453 P0A8Q6 clpS ATP-dependent Clp protease adapter protein ClpS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.473 28.802 2 0.0078141 13519 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 82.716 68.047 63652000 0 0 0 900990 0 1236100 6948100 6537300 5991400 1952900 1625900 2029400 3667500 3939800 3818100 0 0 0 8756500 7725200 7310300 1212200 0 0 6037 453 5888 111682;111683;111684;111685;111686;111687;111688;111689;111690;111691;111692;111693;111694;111695;111696 68230;68231 68231 2 FFTELYK Unmodified 946.48002 0.48001963 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.81 32.37 2 0.0023834 14746 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 113.25 107.77 1914000000 129650000 142480000 114610000 0 0 0 186320000 175710000 161870000 0 0 0 148090000 144490000 135010000 0 0 0 204020000 180970000 190800000 0 0 0 6038 170 5889 111697;111698;111699;111700;111701;111702;111703;111704;111705;111706;111707;111708 68232;68233;68234;68235;68236;68237;68238;68239;68240;68241;68242 68241 7 FFTFMSIEEINALEEEDKNSGK Unmodified 2577.1945 0.19448523 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 52.341 51.129 3 7.3927E-05 23905 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 70.917 69.956 661380000 178350000 171490000 146700000 0 0 0 0 0 0 0 0 0 0 0 155470000 0 0 0 0 0 9364700 0 0 0 6039 1024 5890 111709;111710;111711;111712;111713 68243;68244;68245 68245 0 FFTGQITAAGK Unmodified 1139.5975 0.597509 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.317 26.119 2 1.3969E-06 9780 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 118.18 108.27 687250000 14302000 15282000 13474000 0 3809400 6039300 86805000 80612000 74894000 34529000 0 32866000 47538000 49063000 45279000 4066400 0 1965200 50251000 43531000 43932000 14950000 11600000 12467000 6040 146 5891 111714;111715;111716;111717;111718;111719;111720;111721;111722;111723;111724;111725;111726;111727;111728;111729;111730;111731;111732;111733;111734;111735 68246;68247;68248;68249;68250;68251;68252;68253;68254;68255 68246 10 FFTPVAEAATSGLK Unmodified 1437.7504 0.75038083 1779 P75824 hcr NADH oxidoreductase HCR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 38.758 37.244 2 2.2779E-05 17436 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.69 112.44 65591000 3108700 2748500 2445900 0 0 0 0 0 0 0 0 0 11790000 14313000 12315000 0 0 0 6909500 6404600 5556700 0 0 0 6041 1779 5892 111736;111737;111738;111739;111740;111741;111742;111743;111744 68256;68257;68258;68259;68260;68261 68259 3 FFTVLDDDRHNYLEISAIHNEEGYR Unmodified 3052.4315 0.43151289 1327 P29013 ycgB Uncharacterized protein YcgB yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.911 39.236 4 9.4326E-06 18968 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.222 86.267 125930000 17905000 18479000 20731000 0 0 0 19705000 16368000 15417000 0 0 0 6360300 5264500 5701300 0 0 0 0 0 0 0 0 0 6042 1327 5893 111745;111746;111747;111748;111749;111750;111751;111752;111753 68262;68263 68263 2 FFTVSDAR Unmodified 941.46068 0.46068117 1401 P32705 actP Cation/acetate symporter ActP yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 25.521 24.493 2 0.00040535 7997 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 140.98 122.61 127190000 38585000 37082000 31565000 6297700 7434600 6228500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6043 1401 5894 111754;111755;111756;111757;111758;111759 68264;68265;68266 68266 3 FFVASDVHPQTLDVVR Unmodified 1828.9472 0.94718315 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 3 2 1 1 2 2 2 3 1 1 1 2 2 2 2 1 1 37.521 35.843 2;3 7.0814E-24 16539 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 229.97 224.47 4976200000 385990000 336610000 344210000 33082000 34523000 35649000 453750000 437160000 441960000 40187000 32218000 33826000 305360000 277140000 269090000 10722000 8993300 8929100 495400000 462890000 429050000 35618000 29807000 34003000 6044 1409 5895 111760;111761;111762;111763;111764;111765;111766;111767;111768;111769;111770;111771;111772;111773;111774;111775;111776;111777;111778;111779;111780;111781;111782;111783;111784;111785;111786;111787;111788;111789;111790;111791;111792;111793;111794;111795;111796;111797;111798;111799;111800;111801;111802;111803 68267;68268;68269;68270;68271;68272;68273;68274;68275;68276;68277;68278;68279;68280;68281;68282;68283;68284;68285;68286;68287;68288;68289;68290;68291;68292;68293;68294;68295;68296;68297;68298;68299;68300;68301 68301 34 FFWQQTGQDR Unmodified 1311.5996 0.59963426 1638 P61320 lolB Outer-membrane lipoprotein LolB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.492 32.752 2 0.00026269 15636 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 115.49 115.26 84096000 0 6070600 0 1961000 0 0 7654600 7818800 7983200 2575200 0 1444600 4890300 0 0 0 0 0 14956000 14047000 11809000 2886000 0 0 6045 1638 5896 111804;111805;111806;111807;111808;111809;111810;111811;111812;111813;111814;111815 68302;68303;68304 68303 3 FGADGIVVSNHGGR Unmodified 1384.6848 0.68476088 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.845 20.149 2 8.1282E-08 7801 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 159.09 150.87 81446000 4987200 5356100 4504300 0 0 0 5838500 5784800 6412000 2817800 2766300 2546800 3602200 5304800 4549800 0 0 0 9291900 8121600 6446400 0 3115500 0 6046 1417 5897 111816;111817;111818;111819;111820;111821;111822;111823;111824;111825;111826;111827;111828;111829;111830;111831;111832 68305;68306;68307;68308;68309;68310;68311;68312;68313 68310 9 FGAEVLR Unmodified 790.43374 0.43373813 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.992 21.851 2 0.0020465 7225 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 119.22 32.287 614770000 4933000 52395000 50009000 12912000 12080000 11466000 22287000 30452000 21403000 54311000 0 0 5050600 4780300 2920400 10835000 0 8780700 134440000 128970000 3455200 0 0 43294000 6047 927 5898 111833;111834;111835;111836;111837;111838;111839;111840;111841;111842;111843;111844;111845;111846;111847;111848;111849;111850;111851 68314;68315;68316 68315 3 FGAFLDPVADK Unmodified 1178.5972 0.59717465 655 P0ABF8 pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 41.065 39.268 2 0.050186 19069 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 51.445 44.55 31635000 2848100 0 0 0 0 0 3432500 4777200 4335600 0 0 1299200 2294700 0 2421600 0 0 0 3115000 3424500 3686300 0 0 0 6048 655 5899 111852;111853;111854;111855;111856;111857;111858;111859;111860;111861 68317;68318;68319 68318 0 FGAIAGCMVTEGVVK Unmodified 1537.7633 0.76327047 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.623 36.058 2 5.1913E-05 17430 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.363 81.822 674670000 118010000 128390000 100900000 4186200 4559200 4047000 0 0 0 0 0 0 56466000 48895000 55683000 0 0 0 52734000 54173000 46624000 0 0 0 6049 297 5900 111862;111863;111864;111865;111866;111867;111868;111869;111870;111871;111872;111873 68320;68321;68322;68323;68324;68325;68326;68327;68328 68326 9 FGAIGIGSR Unmodified 876.48175 0.48175096 82 P03817 mioC Protein MioC yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.397 24.294 2 0.0010929 10925 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.374 76.826 1196900000 115030000 107670000 88837000 9581600 8815500 7784900 76580000 72532000 75028000 0 0 0 82033000 83026000 78936000 0 0 0 118590000 126320000 131070000 4842600 5253500 4941100 6050 82 5901 111874;111875;111876;111877;111878;111879;111880;111881;111882;111883;111884;111885;111886;111887;111888;111889;111890;111891 68329;68330;68331 68330 2 FGALEYR Unmodified 854.42865 0.42865276 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.997 23.057 2 0.00029567 9553 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 158.53 121.98 1658800000 89504000 80244000 72675000 848010 708140 564110 120140000 151360000 144300000 0 0 1163600 124650000 129410000 115560000 0 0 0 202200000 210470000 210810000 1553600 1592600 1016100 6051 1491 5902 111892;111893;111894;111895;111896;111897;111898;111899;111900;111901;111902;111903;111904;111905;111906;111907;111908;111909;111910 68332;68333 68333 2 FGANAILAVSLANAK Unmodified 1458.8195 0.81946344 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 2 2 2 3 2 2 2 1 2 1 4 3 2 3 3 4 1 1 1 46.136 44.571 2;3 1.2541E-08 22004 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 192.44 189.93 4677900000 226080000 214180000 217980000 14466000 15245000 13474000 652730000 578590000 573280000 7709400 10323000 7937200 377840000 350270000 327510000 0 0 0 361670000 374650000 339470000 4216300 5612900 4701700 6052 270 5903 111911;111912;111913;111914;111915;111916;111917;111918;111919;111920;111921;111922;111923;111924;111925;111926;111927;111928;111929;111930;111931;111932;111933;111934;111935;111936;111937;111938;111939;111940;111941;111942;111943;111944;111945;111946;111947;111948;111949;111950;111951;111952;111953;111954;111955;111956 68334;68335;68336;68337;68338;68339;68340;68341;68342;68343;68344;68345;68346;68347;68348;68349;68350;68351;68352;68353;68354;68355;68356;68357;68358;68359;68360;68361;68362;68363;68364;68365;68366;68367;68368;68369 68340 36 FGANSVLKPEIK Unmodified 1301.7343 0.73433683 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 23.83 23.001 2;3 5.9506E-23 8125 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 230.95 216.65 5840300000 22812000 19294000 20808000 8367700 8142600 8521600 647220000 639810000 664010000 663240000 572230000 628280000 263000000 232210000 184500000 55380000 41583000 43437000 268170000 242290000 259690000 110760000 112010000 124500000 6053 1088 5904 111957;111958;111959;111960;111961;111962;111963;111964;111965;111966;111967;111968;111969;111970;111971;111972;111973;111974;111975;111976;111977;111978;111979;111980;111981;111982;111983;111984;111985;111986;111987;111988;111989;111990;111991;111992;111993;111994;111995;111996;111997;111998;111999;112000;112001;112002;112003;112004 68370;68371;68372;68373;68374;68375;68376;68377;68378;68379;68380;68381;68382;68383;68384;68385;68386;68387;68388;68389;68390;68391;68392;68393;68394;68395;68396;68397;68398;68399;68400;68401;68402;68403;68404;68405;68406;68407 68382 33 FGANSVLKPEIKR Unmodified 1457.8354 0.83544786 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 1 2 2 2 18.907 18.868 3;4 1.3158E-05 5804 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 108.59 97.012 233010000 0 0 0 0 2652400 0 0 0 0 63042000 58650000 61477000 0 0 0 3233100 5787200 5315200 0 0 0 13991000 9675100 9189400 6054 1088 5905 112005;112006;112007;112008;112009;112010;112011;112012;112013;112014;112015;112016;112017;112018;112019;112020 68408;68409;68410;68411;68412;68413;68414;68415;68416;68417;68418;68419 68415 12 FGANVAVR Unmodified 832.45554 0.45553621 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 17.265 17.95 2 0.00083535 6483 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.14 81.92 196850000 18520000 19025000 18816000 0 0 0 23812000 24857000 23196000 0 0 0 13335000 14001000 13511000 0 0 0 0 13824000 13949000 0 0 0 6055 88 5906 112021;112022;112023;112024;112025;112026;112027;112028;112029;112030;112031 68420;68421;68422;68423;68424;68425 68422 2 FGAPSYNR Unmodified 910.42972 0.42971539 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.919 16.735 2 0.00019486 5485 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 153.15 153.15 843740000 57281000 62644000 54247000 0 0 0 90748000 95169000 100910000 0 0 0 68018000 59157000 58397000 0 0 0 64157000 70036000 62975000 0 0 0 6056 1450 5907 112032;112033;112034;112035;112036;112037;112038;112039;112040;112041;112042;112043 68426;68427;68428;68429;68430;68431;68432;68433;68434;68435;68436;68437 68435 12 FGASPAIVPSAVIHQLSVYKPK Unmodified 2308.2943 0.29433811 964 P0AFW0 rfaH Transcription antitermination protein RfaH yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.16 42.759 4 0.0019946 15548 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 58.914 58.914 166340000 13495000 13630000 9611200 1889800 1480300 0 6998400 7772000 9748200 3073400 2063600 2820800 4592300 5101400 3861300 16224000 17581000 17727000 9368100 10735000 8564700 0 0 0 6057 964 5908 112044;112045;112046;112047;112048;112049;112050;112051;112052;112053;112054;112055;112056;112057;112058;112059;112060;112061;112062;112063 68438;68439;68440;68441;68442 68438 5 FGASSLLASLLK Unmodified 1205.702 0.70197407 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 1 1 2 2 1 1 1 1 1 1 1 2 1 1 1 54.019 52.716 2 1.5165E-06 26303 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.95 140.3 5178700000 243780000 240900000 221700000 8218600 8608000 7727600 626400000 555630000 496210000 0 0 0 546290000 447710000 498110000 0 1502300 1216300 419010000 403780000 439460000 4770000 3105100 4567400 6058 257 5909 112064;112065;112066;112067;112068;112069;112070;112071;112072;112073;112074;112075;112076;112077;112078;112079;112080;112081;112082;112083;112084;112085;112086;112087;112088 68443;68444;68445;68446;68447;68448;68449;68450;68451;68452;68453;68454 68443 12 FGATDCINPNDYDKPIK Unmodified 1966.9095 0.90947702 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 1 2 1 2 29.257 27.973 2;3 9.675E-11 12926 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 142.45 141.42 614500000 56935000 46889000 46696000 0 0 0 63076000 58462000 57331000 0 0 0 47686000 51564000 41420000 0 0 0 51651000 43283000 49512000 0 0 0 6059 1253 5910 112089;112090;112091;112092;112093;112094;112095;112096;112097;112098;112099;112100;112101;112102;112103;112104;112105;112106;112107;112108;112109 68455;68456;68457;68458;68459;68460;68461;68462;68463;68464;68465;68466;68467 68459 13 FGCATRPIPNLPEAR Unmodified 1697.8672 0.86715869 1175 P21338 rna Ribonuclease I yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.6 25.687 3 5.4816E-05 11688 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.633 77.623 100360000 20536000 25006000 20759000 0 785820 0 5143300 0 0 0 0 0 0 4220400 4091800 0 602110 908690 5304000 7820700 5183600 0 0 0 6060 1175 5911 112110;112111;112112;112113;112114;112115;112116;112117;112118;112119;112120;112121 68468;68469 68468 1 FGDDEAFEENVR Unmodified 1426.6001 0.60008777 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.042 27.786 2 4.2928E-12 12871 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 196.52 192.22 1860700000 518540000 420800000 426220000 0 0 0 84127000 109740000 100610000 0 0 0 22318000 18921000 21159000 0 0 0 45080000 49164000 44065000 0 0 0 6061 1254 5912 112122;112123;112124;112125;112126;112127;112128;112129;112130;112131;112132;112133 68470;68471;68472;68473;68474;68475;68476;68477;68478;68479;68480;68481 68476 12 FGDEGEYR Unmodified 971.39847 0.39847484 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.633 15.398 2 0.00043484 4833 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.28 139.28 3143200000 7743200 6450300 5347700 0 0 0 338620000 309630000 299770000 0 0 0 340160000 369760000 277440000 0 0 0 411600000 395790000 380880000 0 0 0 6062 1324 5913 112134;112135;112136;112137;112138;112139;112140;112141;112142;112143;112144;112145 68482;68483;68484;68485;68486;68487;68488;68489;68490 68489 8 FGDLDQNK Unmodified 935.43486 0.43486035 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By MS/MS By MS/MS 1 1 15.542 15.819 2 0.0033078 5364 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.187 69.565 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6063 1932 5914 112146;112147 68491;68492 68492 2 FGDLGASQVDMTLAHTGYTAGQVLR Unmodified 2607.2751 0.27513559 1416 P33231 lldP L-lactate permease yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 45.412 43.999 3 1.0316E-06 21281 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 95.819 93.047 34769000 0 0 0 0 0 0 0 0 3164700 0 0 0 3316600 0 0 0 0 0 7688300 10244000 10355000 0 0 0 6064 1416 5915 112148;112149;112150;112151;112152 68493 68493 1 FGDPETQPIMLR Oxidation (M) 1418.6864 0.68640036 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 1 0 By MS/MS 1 32.091 30.984 2 0.03795 14601 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 43.308 37.116 5666800 0 5666800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6065 1112 5916 112153 68494 68494 494 0 FGDPETQPIMLR Unmodified 1402.6915 0.69148574 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 36.02 34.615 2 0.062909 16573 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 44.318 43.25 396580000 133030000 145540000 117490000 0 0 530630 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6066 1112 5916 112154;112155;112156;112157 68495 68495 0 FGDPGVR Unmodified 746.37114 0.37113788 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.231 14.821 2 0.011149 3963 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 86.086 86.086 1334200000 33421000 0 30928000 17234000 15546000 16212000 168950000 156740000 164100000 27985000 22734000 23453000 84274000 89448000 81021000 9821900 6564200 7447900 108070000 116010000 102100000 18699000 16672000 16744000 6067 1427 5917 112158;112159;112160;112161;112162;112163;112164;112165;112166;112167;112168;112169;112170;112171;112172;112173;112174;112175;112176;112177;112178;112179;112180 68496;68497;68498;68499;68500;68501;68502;68503;68504;68505;68506;68507 68497 12 FGDVGADTLGHIAEACAK Unmodified 1830.857 0.85704752 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 34.506 33.041 2;3 9.9087E-37 16127 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 296.97 286.36 12719000000 1051100000 1020400000 881740000 3506200 3092900 3243400 1492300000 1530200000 1498900000 5646100 5518100 4844600 817540000 828830000 764650000 3239000 2104400 3131800 909090000 902200000 979380000 2000300 3121000 3211200 6068 256 5918 112181;112182;112183;112184;112185;112186;112187;112188;112189;112190;112191;112192;112193;112194;112195;112196;112197;112198;112199;112200;112201;112202;112203;112204;112205;112206;112207;112208;112209;112210;112211;112212;112213;112214;112215;112216 68508;68509;68510;68511;68512;68513;68514;68515;68516;68517;68518;68519;68520;68521;68522;68523;68524;68525;68526;68527;68528;68529;68530;68531;68532;68533;68534;68535;68536;68537;68538;68539 68512 32 FGDYIGIGCGAHGK Unmodified 1450.6663 0.66633362 1601 P52062 yggW Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 24.543 23.581 3 0.010081 10498 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 30.867 26.807 115670000 10619000 7244800 9185900 0 0 1735900 0 11321000 10962000 0 1076700 0 8680400 8076500 6272700 0 0 0 13586000 13998000 12908000 0 0 0 6069 1601 5919 112217;112218;112219;112220;112221;112222;112223;112224;112225;112226;112227;112228;112229 68540 68540 1 FGEAIELLEQGDK Unmodified 1447.7195 0.71947463 153 P07023 tyrA T-protein;Chorismate mutase;Prephenate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.613 43.098 2 1.8241E-13 21043 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 202.03 198.68 200810000 16073000 15730000 13741000 0 0 0 17308000 17893000 15334000 0 0 0 13672000 14062000 14344000 0 0 0 22403000 19075000 21174000 0 0 0 6070 153 5920 112230;112231;112232;112233;112234;112235;112236;112237;112238;112239;112240;112241 68541;68542;68543;68544;68545;68546;68547;68548;68549;68550;68551;68552 68544 12 FGEEEDDIAR Unmodified 1179.5044 0.50439648 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.174 20.388 2 7.6385E-07 8203 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 172.21 168.28 523400000 24328000 22848000 21037000 6787500 5780100 6482000 51870000 57474000 60007000 16195000 20365000 20812000 34242000 31632000 32668000 2685800 2851500 2927800 31149000 27886000 26706000 6802500 4998100 4868100 6071 33 5921 112242;112243;112244;112245;112246;112247;112248;112249;112250;112251;112252;112253;112254;112255;112256;112257;112258;112259;112260;112261;112262;112263;112264;112265 68553;68554;68555;68556;68557;68558;68559;68560;68561;68562;68563;68564;68565;68566;68567;68568;68569;68570;68571;68572;68573 68556 21 FGEEVEMITK Unmodified 1181.5638 0.56382561 1075 P12008 aroC Chorismate synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 32.14 30.97 2 2.7221E-05 14441 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.27 130.07 235160000 49310000 49308000 47302000 0 0 0 0 0 0 0 0 0 17181000 14504000 16202000 0 0 0 0 19233000 22117000 0 0 0 6072 1075 5922 112266;112267;112268;112269;112270;112271;112272;112273 68574 68574 1 FGEFTLK Unmodified 840.43815 0.43815481 336 P0A7E3 pyrE Orotate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.328 30.056 2 0.012523 14050 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.699 68.545 58201000 13398000 12971000 8436200 0 0 0 2597600 0 0 0 0 0 2462500 2420400 1840300 0 0 0 5182100 4890200 4002600 0 0 0 6073 336 5923 112274;112275;112276;112277;112278;112279;112280;112281;112282;112283 68575;68576;68577 68576 3 FGEGTIVNMEGSGEHSR Unmodified 1805.8003 0.80026092 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.712 23.775 3 7.6486E-09 7672 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 98.281 96.352 291200000 20835000 22060000 18426000 0 0 0 20085000 0 16057000 1965000 2438300 1596300 12574000 12143000 10729000 25186000 23390000 23341000 20159000 23223000 22391000 5653100 4731900 4219100 6074 80 5924 112284;112285;112286;112287;112288;112289;112290;112291;112292;112293;112294;112295;112296;112297;112298;112299;112300;112301;112302;112303 68578;68579;68580;68581;68582 68578 5 FGEIEEVELGR Unmodified 1276.6299 0.62993134 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 5 4 1 1 2 2 3 2 1 3 1 2 1 1 1 2 1 5 2 4 37.834 36.126 2;3 1.4446E-10 12024 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 195.57 190.67 30823000000 877880000 924820000 804090000 2984500000 2964600000 2682200000 1026900000 1030600000 993810000 397410000 397310000 363250000 696670000 652530000 650760000 165310000 115240000 121840000 1039500000 1109800000 1138300000 3217200000 3188200000 3279900000 6075 133 5925 112304;112305;112306;112307;112308;112309;112310;112311;112312;112313;112314;112315;112316;112317;112318;112319;112320;112321;112322;112323;112324;112325;112326;112327;112328;112329;112330;112331;112332;112333;112334;112335;112336;112337;112338;112339;112340;112341;112342;112343;112344;112345;112346;112347;112348;112349;112350;112351;112352;112353;112354 68583;68584;68585;68586;68587;68588;68589;68590;68591;68592;68593;68594;68595;68596;68597;68598;68599;68600;68601;68602;68603;68604;68605;68606;68607;68608;68609;68610;68611;68612;68613;68614;68615;68616;68617;68618;68619;68620;68621;68622;68623;68624;68625;68626;68627;68628;68629;68630;68631;68632;68633;68634;68635;68636;68637;68638;68639;68640;68641;68642;68643;68644;68645;68646;68647;68648;68649;68650;68651;68652;68653;68654;68655;68656;68657 68585 65 FGEIEQR Unmodified 877.42938 0.42938104 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 15.255 16.006 2 0.053876 5414 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 76.035 62.827 55294000 19226000 15113000 14879000 0 0 0 0 0 3983400 0 0 0 2092700 0 0 0 0 0 0 0 0 0 0 0 6076 1814 5926 112355;112356;112357;112358;112359 68658;68659;68660 68659 0 FGELDYAHMK Unmodified 1209.5488 0.54884425 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 25.401 24.309 2;3 0.0002692 11026 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.89 109.95 2030300000 222670000 227560000 202010000 5726200 4009800 4641300 218160000 261480000 281940000 11402000 13590000 9177400 91428000 94508000 76048000 2262700 1151400 1699900 98937000 105770000 96123000 0 0 0 6077 1662 5927 112360;112361;112362;112363;112364;112365;112366;112367;112368;112369;112370;112371;112372;112373;112374;112375;112376;112377;112378;112379;112380;112381;112382;112383;112384;112385;112386;112387;112388;112389;112390;112391;112392;112393;112394;112395;112396;112397;112398 68661;68662;68663;68664;68665;68666;68667;68668;68669;68670;68671;68672;68673;68674;68675;68676 68666 16 FGELPFLFK Unmodified 1096.5957 0.59571809 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.988 52.548 2 2.3844E-05 26021 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 155.75 151.82 1042900000 86711000 74648000 87893000 0 0 0 75978000 98953000 106450000 0 0 0 87155000 108840000 93692000 0 0 0 79244000 73534000 69827000 0 0 0 6078 56 5928 112399;112400;112401;112402;112403;112404;112405;112406;112407;112408;112409;112410 68677;68678;68679;68680;68681;68682;68683;68684;68685;68686;68687;68688 68679 12 FGEMEVWALEAYGAAYTLQEMLTVK Unmodified 2849.3656 0.36559008 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 1 1 55.917 55.178 2;3 9.0334E-22 21343 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 209.67 207.53 1009100000 0 0 0 0 0 0 0 0 0 43064000 42260000 42929000 0 2073900 0 253150000 185420000 263440000 0 0 0 53832000 55322000 67615000 6079 463 5929 112411;112412;112413;112414;112415;112416;112417;112418;112419;112420;112421;112422;112423 68689;68690;68691;68692;68693;68694;68695;68696;68697;68698 68694 10 FGEMEVWALEAYGAAYTLQEMLTVK Oxidation (M) 2865.3605 0.3605047 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By MS/MS By matching By matching 1 1 1 56.013 56.069 3 0.00010197 22087 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 75.539 74.857 79670000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25647000 25794000 28229000 0 0 0 0 0 0 6080 463 5929 112424;112425;112426 68699 68699 262 1 FGETYINR Unmodified 998.48214 0.48214489 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 21.34 21.581 2 3.0024E-06 8759 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 181.68 177.32 4426800000 991950000 935020000 963940000 2455800 2101200 2218300 182970000 172980000 159730000 0 0 0 105220000 87020000 82163000 0 0 0 274900000 258950000 203970000 0 741120 502880 6081 1264 5930 112427;112428;112429;112430;112431;112432;112433;112434;112435;112436;112437;112438;112439;112440;112441;112442;112443;112444;112445 68700;68701;68702;68703;68704;68705;68706;68707;68708;68709;68710 68703 7 FGFELAAHHDLR Unmodified 1411.6997 0.69968266 1665 P63417 yhbS Uncharacterized N-acetyltransferase YhbS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 26.705 25.573 2;3;4 4.2542E-05 11936 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 96.103 79.33 1304300000 66614000 69534000 49801000 0 0 0 186430000 170840000 151260000 0 0 0 116040000 111180000 101260000 0 0 0 105510000 85922000 89921000 0 0 0 6082 1665 5931 112446;112447;112448;112449;112450;112451;112452;112453;112454;112455;112456;112457;112458;112459;112460;112461;112462;112463;112464;112465;112466;112467;112468;112469;112470;112471;112472;112473;112474;112475;112476;112477;112478;112479;112480;112481 68711;68712;68713;68714;68715;68716;68717;68718;68719;68720;68721;68722;68723;68724;68725;68726;68727;68728;68729;68730;68731;68732;68733;68734;68735;68736;68737 68715 22 FGFKGETQINDQLTGYGR Unmodified 2029.9858 0.9857535 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 33.166 31.729 3 2.1179E-22 11987 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 181.97 178.92 162530000 0 0 0 0 0 0 0 0 0 24539000 18662000 27087000 0 0 0 6663200 4296300 8146900 0 0 0 22521000 23925000 26686000 6083 75 5932 112482;112483;112484;112485;112486;112487;112488;112489;112490 68738;68739;68740;68741;68742;68743;68744 68744 7 FGFLLDALK Unmodified 1022.5801 0.58006802 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 52.823 51.563 2 0.0010929 25731 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.374 72.074 4733600000 290160000 301140000 285980000 2059100 2945600 3654900 411880000 352320000 419510000 2834500 2616600 3325800 416510000 380480000 390830000 1221300 1713700 0 486010000 485660000 489690000 0 1575300 1457400 6084 1189 5933 112491;112492;112493;112494;112495;112496;112497;112498;112499;112500;112501;112502;112503;112504;112505;112506;112507;112508;112509;112510;112511;112512;112513;112514 68745;68746;68747;68748;68749;68750;68751;68752;68753;68754;68755;68756;68757;68758;68759;68760;68761;68762 68748 18 FGFVLPMDECLAR Unmodified 1553.7371 0.73705572 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 52.878 51.496 2 0.011638 25064 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 59.067 51.142 186170000 0 0 0 2537700 1881700 0 23472000 23257000 24127000 3611400 3796400 4508200 0 0 22538000 0 0 0 23901000 25830000 24901000 0 0 1809400 6085 139 5934 112515;112516;112517;112518;112519;112520;112521;112522;112523;112524;112525;112526;112527 68763 68763 1 FGGALMAVK Unmodified 892.48406 0.48405915 187 P08390 usg USG-1 protein yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 28.076 26.669 2 0.0033817 12608 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.784 78.392 222840000 41798000 0 0 0 2702600 2180500 44403000 42906000 41153000 0 0 0 0 0 0 0 0 0 18776000 17303000 0 6053200 0 5565100 6086 187 5935 112528;112529;112530;112531;112532;112533;112534;112535;112536;112537 68764 68764 1 FGGESVLAGSIIVR Unmodified 1403.7773 0.77726428 355 P0A7L8 rpmA 50S ribosomal protein L27 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 5 5 2 2 2 2 4 4 3 2 4 4 4 2 2 2 3 4 4 1 1 44.106 42.67 2;3 3.0648E-06 14584 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 150.46 146.16 1140000000 104400000 126190000 123760000 19061000 20418000 16616000 47233000 51101000 44483000 38757000 34233000 0 59525000 59645000 54971000 19675000 12791000 14215000 97859000 100900000 92076000 1225800 0 827080 6087 355 5936 112538;112539;112540;112541;112542;112543;112544;112545;112546;112547;112548;112549;112550;112551;112552;112553;112554;112555;112556;112557;112558;112559;112560;112561;112562;112563;112564;112565;112566;112567;112568;112569;112570;112571;112572;112573;112574;112575;112576;112577;112578;112579;112580;112581;112582;112583;112584;112585;112586;112587;112588;112589;112590;112591;112592;112593;112594;112595;112596;112597;112598;112599;112600;112601;112602 68765;68766;68767;68768;68769;68770;68771;68772;68773;68774;68775;68776;68777;68778;68779;68780;68781;68782;68783;68784;68785;68786;68787;68788;68789;68790;68791;68792;68793;68794;68795;68796;68797;68798;68799;68800;68801;68802;68803;68804;68805;68806;68807;68808;68809;68810;68811;68812;68813;68814;68815;68816;68817;68818;68819;68820;68821;68822 68767 56 FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK Unmodified 4091.0653 0.065347814 17 CON__P35908 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 2 1 2 53.423 52.103 3;4 5.0195E-13 20781 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 90.3 88.929 173540000 0 0 0 5671300 10273000 11484000 0 0 0 15718000 16873000 15456000 0 0 0 0 2415200 0 0 0 0 44532000 14565000 36549000 + 6088 17 5937 112603;112604;112605;112606;112607;112608;112609;112610;112611;112612;112613;112614;112615;112616;112617;112618;112619 68823;68824;68825;68826;68827;68828;68829;68830;68831 68827 9 FGGNLTAAEEK Unmodified 1135.551 0.55095274 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.273 18.631 2 1.491E-07 7201 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.65 158.94 347060000 0 0 0 0 0 126380 46507000 51138000 43181000 15954000 9326700 7410400 29353000 29220000 23751000 0 1043200 0 28793000 31880000 27495000 0 0 1883900 6089 1836 5938 112620;112621;112622;112623;112624;112625;112626;112627;112628;112629;112630;112631;112632;112633;112634 68832;68833;68834;68835;68836;68837;68838;68839;68840;68841;68842 68834 11 FGGNLTAAEEKK Unmodified 1263.6459 0.64591575 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 14.342 14.347 3 0.13703 3845 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 24.514 20.778 15270000 0 0 0 0 0 0 0 0 0 4061100 4381800 4623300 0 0 0 0 2203700 0 0 0 0 0 0 0 6090 1836 5939 112635;112636;112637;112638 68843 68843 1 FGGNVNAER Unmodified 962.45699 0.45699277 1863 P76491 yfbR 5'-deoxynucleotidase YfbR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.401 12.941 2 0.089506 3143 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 43.442 41.576 32014000 0 0 0 0 2716200 1888400 5092100 0 7412800 4244200 3028800 2357200 0 0 2850600 1167800 1256200 0 0 0 0 0 0 0 6091 1863 5940 112639;112640;112641;112642;112643;112644;112645;112646;112647;112648 68844 68844 1 FGGQILDTVDIENYISVPK Unmodified 2107.0837 0.083736215 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.559 53.111 2;3 4.2978E-14 26075 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 194.77 194.21 1165100000 63518000 63075000 58854000 0 0 0 124560000 111420000 109610000 0 0 0 115830000 116000000 100100000 0 0 0 110950000 102180000 89036000 0 0 0 6092 1437 5941 112649;112650;112651;112652;112653;112654;112655;112656;112657;112658;112659;112660;112661;112662;112663;112664;112665;112666;112667;112668;112669;112670;112671;112672 68845;68846;68847;68848;68849;68850;68851;68852;68853;68854;68855;68856 68847 12 FGGSAWR Unmodified 779.37147 0.37147223 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 18.334 18.708 2 0.00059133 7072 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.07 150.07 1028200000 0 0 0 980540 1003400 969440 379180000 313690000 331040000 1296000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6093 1324 5942 112673;112674;112675;112676;112677;112678;112679 68857;68858;68859 68858 3 FGGSSLADVK Unmodified 979.49746 0.4974606 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.857 21.205 2 0.0087687 8308 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 65.224 41.07 250660000 20395000 19329000 16572000 0 0 0 21779000 24920000 27907000 0 0 0 21470000 15699000 15289000 0 0 0 24342000 23165000 19798000 0 0 0 6094 35 5943 112680;112681;112682;112683;112684;112685;112686;112687;112688;112689;112690;112691 68860;68861;68862 68862 0 FGGTSVANAER Unmodified 1107.5309 0.530886 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 14.011 14.907 2 7.9358E-09 4787 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 179.81 131.95 1590700000 233030000 203700000 186300000 8624400 0 0 0 0 0 0 0 0 173200000 180780000 0 0 0 0 0 303630000 301430000 0 0 0 6095 34 5944 112692;112693;112694;112695;112696;112697;112698;112699 68863;68864;68865;68866;68867;68868;68869 68866 7 FGGYAQSGLLAEITPDK Unmodified 1765.8887 0.88866522 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 3 2 3 2 2 47.507 46.094 2 7.057E-19 22252 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 191.53 183.8 2738800000 51873000 40190000 0 0 0 0 294370000 286060000 296190000 0 0 0 252630000 228420000 249230000 0 0 0 342910000 389640000 307300000 0 0 0 6096 895 5945 112700;112701;112702;112703;112704;112705;112706;112707;112708;112709;112710;112711;112712;112713;112714;112715;112716;112717;112718;112719;112720;112721 68870;68871;68872;68873;68874;68875;68876;68877;68878;68879;68880;68881;68882;68883;68884;68885;68886;68887;68888;68889;68890;68891;68892;68893;68894;68895;68896;68897;68898 68870 26 FGGYAQSGLLAEITPDKAFQDK Unmodified 2355.1747 0.17467649 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.996 44.523 3 3.8984E-10 21703 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 118.84 117.57 370160000 4444800 4418600 4677500 0 0 0 29386000 27785000 35522000 0 0 0 38029000 37497000 36965000 0 0 0 47186000 56819000 47432000 0 0 0 6097 895 5946 112722;112723;112724;112725;112726;112727;112728;112729;112730;112731;112732;112733 68899;68900;68901;68902;68903;68904;68905;68906 68902 8 FGHEISEDALR Unmodified 1272.6099 0.6098646 1534 P39384 yjiM Uncharacterized protein YjiM yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 21.431 21.218 3 0.028718 6554 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 46.844 41.95 289830000 9649300 6635100 8171600 403630 0 242860 47406000 37471000 43634000 2226900 3227200 1531100 22449000 22819000 19544000 0 0 0 21543000 21118000 21758000 0 0 0 6098 1534 5947 112734;112735;112736;112737;112738;112739;112740;112741;112742;112743;112744;112745;112746;112747;112748;112749;112750;112751;112752;112753;112754;112755;112756 68907;68908;68909;68910;68911;68912;68913;68914 68907 5 FGHHGGNHPVK Unmodified 1185.5792 0.57917359 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5.4052 6.2415 2 0.00026114 1031 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.713 70.8 304830000 82564000 73125000 70875000 0 0 0 0 0 0 0 0 0 5103600 6988700 5158800 0 0 0 21422000 18727000 20865000 0 0 0 6099 238 5948 112757;112758;112759;112760;112761;112762;112763;112764;112765 68915;68916;68917;68918;68919;68920 68915 6 FGHHGGNHPVKDVEK Unmodified 1656.8121 0.81208666 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 3 3 3 3 10.197 11.024 2;3;4 8.183E-09 2416 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 161.99 141.78 707220000 167340000 180570000 180420000 0 0 0 0 0 0 0 0 0 9986000 9247600 6625300 0 0 0 52745000 51010000 49279000 0 0 0 6100 238 5949 112766;112767;112768;112769;112770;112771;112772;112773;112774;112775;112776;112777;112778;112779;112780;112781;112782;112783;112784;112785;112786;112787;112788;112789;112790 68921;68922;68923;68924;68925;68926;68927;68928;68929;68930;68931;68932;68933 68928 12 FGHLFPSHLPPR Unmodified 1403.7462 0.74623892 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 3 3 2 1 2 4 4 3 2 2 3 2 1 1 4 2 3 4 3 25.064 23.953 3;4 3.6248E-05 10649 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 79.659 77.52 229230000 1300400 5468000 8801000 2526800 3758700 3931900 18365000 13951000 20342000 21057000 22577000 13540000 11394000 6943200 10250000 0 1396000 817770 4886400 23279000 10710000 7406900 8475200 8053600 6101 122 5950 112791;112792;112793;112794;112795;112796;112797;112798;112799;112800;112801;112802;112803;112804;112805;112806;112807;112808;112809;112810;112811;112812;112813;112814;112815;112816;112817;112818;112819;112820;112821;112822;112823;112824;112825;112826;112827;112828;112829;112830;112831;112832;112833;112834;112835;112836;112837;112838;112839;112840;112841;112842;112843;112844;112845 68934;68935;68936;68937;68938;68939;68940;68941;68942;68943;68944;68945;68946;68947;68948;68949;68950;68951;68952;68953;68954;68955;68956;68957;68958;68959;68960;68961 68952 27 FGIDALR Unmodified 790.43374 0.43373813 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.286 30.871 2 0.0020465 14889 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.22 51.333 122290000 8448300 7660000 5506300 0 0 0 17290000 15489000 19072000 0 0 0 5727200 8069000 7681600 0 0 0 6839700 5275600 3847100 6170600 5209800 0 6102 169 5951 112846;112847;112848;112849;112850;112851;112852;112853;112854;112855;112856;112857;112858;112859 68962;68963;68964 68963 3 FGIDMNTDYTLEEVGK Oxidation (M) 1846.8295 0.82949536 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 5 5 4 42.597 42.713 2 3.8667E-18 14945 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 183.06 183.06 110610000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50833000 29116000 30658000 0 0 0 0 0 0 6103 36 5952 112860;112861;112862;112863;112864;112865;112866;112867;112868;112869;112870;112871;112872;112873 68965;68966;68967;68968;68969;68970;68971;68972;68973;68974 68965 15 10 FGIDMNTDYTLEEVGK Unmodified 1830.8346 0.83458074 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 9 8 10 1 1 1 1 1 1 49.631 48.895 2;3 1.9513E-34 17595 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 199.27 183.02 2348700000 26013000 12635000 17594000 1491000 1364300 1429700 17484000 18868000 21231000 8219300 6746800 6216000 22479000 17851000 18447000 937050000 575870000 536480000 31443000 27492000 28060000 5038400 4689600 4534800 6104 36 5952 112874;112875;112876;112877;112878;112879;112880;112881;112882;112883;112884;112885;112886;112887;112888;112889;112890;112891;112892;112893;112894;112895;112896;112897;112898;112899;112900;112901;112902;112903;112904;112905;112906;112907;112908;112909;112910;112911;112912;112913;112914;112915;112916;112917;112918;112919;112920;112921;112922;112923 68975;68976;68977;68978;68979;68980;68981;68982;68983;68984;68985;68986;68987;68988;68989;68990;68991;68992;68993;68994;68995;68996;68997;68998;68999;69000;69001;69002;69003;69004;69005;69006;69007;69008;69009;69010;69011;69012;69013;69014;69015;69016;69017;69018;69019;69020;69021;69022;69023;69024;69025;69026;69027;69028;69029;69030;69031;69032;69033;69034;69035;69036;69037 69004 62 FGIDMNTDYTLEEVGKQFDVTR Oxidation (M) 2593.2006 0.20063324 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 1 By MS/MS By MS/MS By MS/MS 1 1 1 49.012 49.067 3 4.9329E-15 18029 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 136.14 136.14 53271000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22994000 16250000 14027000 0 0 0 0 0 0 6105 36 5953 112924;112925;112926 69038;69039;69040 69040 15 3 FGIDMNTDYTLEEVGKQFDVTR Unmodified 2577.2057 0.20571862 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 2 1 52.577 51.969 2;3 3.0292E-102 20039 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 413.61 402.5 4684300000 12411000 3116100 2446200 0 0 0 0 0 0 0 0 0 0 0 0 1546700000 1558400000 1557400000 0 0 3850400 0 0 0 6106 36 5953 112927;112928;112929;112930;112931;112932;112933;112934;112935;112936;112937 69041;69042;69043;69044;69045;69046;69047;69048;69049 69043 9 FGIGGSNLQGAQR Unmodified 1303.6633 0.66329715 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.391 23.341 2 0.015372 10299 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.547 42.285 222930000 17647000 19731000 16144000 0 0 0 18567000 15594000 13822000 1408600 1460200 1105000 18714000 15817000 16151000 0 0 0 21033000 20176000 23660000 984250 918070 0 6107 1979 5954 112938;112939;112940;112941;112942;112943;112944;112945;112946;112947;112948;112949;112950;112951;112952;112953;112954 69050;69051;69052;69053;69054;69055;69056;69057;69058 69050 0 FGIHPVAGR Unmodified 952.52428 0.52428448 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.033 16.682 2 0.00092885 5354 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 97.602 90.189 365100000 12881000 11884000 12517000 2068000 2341800 2222400 46423000 32486000 38920000 5761700 6438800 7594700 30986000 30119000 26745000 0 0 0 29915000 29921000 29119000 3857000 2898300 0 6108 633 5955 112955;112956;112957;112958;112959;112960;112961;112962;112963;112964;112965;112966;112967;112968;112969;112970;112971;112972;112973;112974 69059;69060;69061 69060 3 FGIMLTEMHGTQQDTQAAIAWLQEHHVK Unmodified 3219.5594 0.55937271 1346 P30750 metN Methionine import ATP-binding protein MetN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.603 46.084 5 0.09233 19007 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 30.355 24.981 126740000 9721000 9372200 9151300 0 0 0 16925000 11553000 9517400 7221000 6210700 6047600 10120000 9929400 5088200 0 0 0 8129300 7756600 0 0 0 0 6109 1346 5956 112975;112976;112977;112978;112979;112980;112981;112982;112983;112984;112985;112986;112987;112988 69062 69062 1 FGINENMTHVEK Unmodified 1417.666 0.66599927 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 21.575 21.652 2;3 1.1839E-11 8300 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 209.8 182.02 1957800000 203330000 196910000 165160000 5962000 6104900 6025900 236090000 258690000 216910000 11235000 10251000 6169400 119180000 105580000 110820000 0 0 0 94972000 103100000 95142000 2336300 1892900 1899200 6110 585 5957 112989;112990;112991;112992;112993;112994;112995;112996;112997;112998;112999;113000;113001;113002;113003;113004;113005;113006;113007;113008;113009;113010;113011;113012;113013;113014;113015;113016;113017;113018;113019;113020;113021;113022;113023;113024;113025;113026;113027;113028 69063;69064;69065;69066;69067;69068;69069;69070;69071;69072;69073;69074;69075;69076;69077;69078;69079;69080;69081;69082;69083;69084;69085 69084 23 FGINQPGK Unmodified 859.4552 0.45520186 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.649 17.418 2 0.0092881 5855 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 80.294 56.095 78242000 0 4962900 0 0 0 0 17181000 15878000 12194000 0 0 0 6412000 5493900 4880200 0 0 0 4144500 3630100 3465800 0 0 0 6111 169 5958 113029;113030;113031;113032;113033;113034;113035;113036;113037;113038 69086;69087 69086 2 FGISEGMVMAAGPGGK Unmodified 1507.7163 0.71632028 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 39.07 37.392 2;3 3.5832E-08 18149 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 117.14 112.52 960720000 63168000 56495000 57305000 466260 503220 0 88823000 85264000 86432000 0 0 0 82754000 70616000 71816000 0 0 0 101500000 95298000 100280000 0 0 0 6112 60 5959 113039;113040;113041;113042;113043;113044;113045;113046;113047;113048;113049;113050;113051;113052;113053;113054;113055;113056;113057;113058;113059;113060;113061;113062;113063;113064 69088;69089;69090;69091;69092;69093;69094;69095;69096;69097;69098;69099;69100 69093 13 FGISQFSEQVNYQR Unmodified 1701.8111 0.8110836 1274 P25798 fliF Flagellar M-ring protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 37.644 36.065 2 4.0613E-11 17510 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 171.85 162.42 16018000 4059600 3599300 3585700 1139700 1609400 2024000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6113 1274 5960 113065;113066;113067;113068;113069;113070 69101;69102 69101 1 FGLAATQVLQLVETLR Unmodified 1758.004 0.003969751 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 55.648 54.205 2;3 6.7834E-31 27040 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 285.13 281.11 1779800000 143180000 128560000 130030000 2538700 2059300 2913300 144660000 120820000 136780000 3491700 5153700 4316200 150320000 147930000 169990000 0 0 0 161230000 163530000 156750000 1816000 1762200 2036900 6114 1172 5961 113071;113072;113073;113074;113075;113076;113077;113078;113079;113080;113081;113082;113083;113084;113085;113086;113087;113088;113089;113090;113091;113092;113093;113094;113095;113096;113097;113098;113099;113100;113101;113102;113103;113104;113105 69103;69104;69105;69106;69107;69108;69109;69110;69111;69112;69113;69114;69115;69116;69117;69118;69119;69120 69112 18 FGLAFLWTK Unmodified 1081.5961 0.59605244 1020 P0AGH8 pstC Phosphate transport system permease protein PstC yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 54.136 52.685 2 0.00020577 24711 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 143.89 103.68 124830000 0 0 0 0 0 0 13818000 9808400 10498000 0 0 0 15176000 11449000 12329000 0 0 0 22206000 15199000 14351000 0 0 0 6115 1020 5962 113106;113107;113108;113109;113110;113111;113112;113113;113114 69121;69122;69123;69124;69125;69126 69126 5 FGLAPLGCGWVIWR Unmodified 1630.8442 0.84423841 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 54.719 53.226 2 1.7922E-06 26636 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.59 140.93 4614800000 20920000 19507000 18187000 0 0 0 1557900000 1515100000 1343300000 18901000 16999000 19242000 15593000 11223000 16785000 0 0 0 13309000 14965000 12940000 0 0 0 6116 1755;1756 5963 113115;113116;113117;113118;113119;113120;113121;113122;113123;113124;113125;113126;113127;113128;113129;113130;113131;113132 69127;69128;69129;69130;69131;69132 69131 6 FGLIPEFIGR Unmodified 1147.639 0.63897988 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.238 51.12 2 4.8438E-09 25209 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 193.28 178.61 2958500000 217530000 210460000 199880000 10901000 13276000 11111000 245000000 254200000 244170000 27427000 0 26112000 211270000 226270000 214950000 8008500 7440100 6325800 278350000 247540000 266440000 12398000 10151000 9323000 6117 244 5964 113133;113134;113135;113136;113137;113138;113139;113140;113141;113142;113143;113144;113145;113146;113147;113148;113149;113150;113151;113152;113153;113154;113155;113156 69133;69134;69135;69136;69137;69138;69139;69140;69141;69142;69143;69144;69145;69146;69147;69148;69149;69150;69151;69152;69153;69154 69139 22 FGLLEMSR Unmodified 951.48479 0.48478743 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.109 36.427 2 3.7226E-05 17713 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 173.59 150.66 180130000 21775000 22747000 20800000 5368000 4548500 5840600 8785700 10784000 1637200 0 0 0 12636000 8197100 8881700 0 0 0 20503000 13760000 13866000 0 0 0 6118 1183 5965 113157;113158;113159;113160;113161;113162;113163;113164;113165;113166;113167;113168;113169;113170;113171 69155;69156;69157;69158;69159;69160;69161;69162;69163;69164 69160 10 FGLLGYEAATLEDVGR Unmodified 1709.8625 0.86245047 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 1 1 1 2 2 5 3 5 52.14 51.426 2;3 1.1403E-23 19193 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 204.69 204.69 1684400000 0 4048500 3793900 0 0 0 36065000 35259000 6084000 20897000 13866000 18632000 21049000 30559000 24602000 605870000 424230000 439450000 0 0 0 0 0 0 6119 1089 5966 113172;113173;113174;113175;113176;113177;113178;113179;113180;113181;113182;113183;113184;113185;113186;113187;113188;113189;113190;113191;113192;113193;113194;113195;113196;113197;113198;113199 69165;69166;69167;69168;69169;69170;69171;69172;69173;69174;69175;69176;69177;69178;69179;69180;69181;69182;69183;69184;69185;69186;69187 69173 18 FGLLGYEAATLEDVGREIGLTR Unmodified 2379.2434 0.24342475 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 55.074 55.13 3 1.5503E-22 20841 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 177.61 151.13 296710000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65516000 107730000 123470000 0 0 0 0 0 0 6120 1089 5967 113200;113201;113202 69188 69188 1 FGLLPDPAR Unmodified 984.53927 0.53926584 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.362 36.808 2 0.00022858 17728 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.08 114.61 159740000 17384000 18065000 17931000 474480 333500 374880 12733000 10465000 10964000 876610 866390 1516800 7423700 8284100 8071600 2642100 1620600 2017200 10138000 14719000 12842000 0 0 0 6121 1355 5968 113203;113204;113205;113206;113207;113208;113209;113210;113211;113212;113213;113214;113215;113216;113217;113218;113219;113220;113221;113222;113223 69189;69190;69191;69192;69193;69194;69195;69196;69197;69198;69199;69200 69196 12 FGLLTDK Unmodified 792.43815 0.43815481 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.84 27.559 2 0.0015294 12501 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.38 81.337 2408200000 133070000 124490000 105740000 0 0 0 168320000 177590000 163730000 0 0 0 226010000 192710000 210750000 0 0 0 298040000 304850000 300870000 0 2012500 0 6122 1283 5969 113224;113225;113226;113227;113228;113229;113230;113231;113232;113233;113234;113235;113236 69201;69202;69203;69204;69205;69206;69207;69208;69209;69210;69211;69212 69209 12 FGLSCGLVSPER Unmodified 1320.6496 0.64962092 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 34.894 33.655 2 3.2332E-06 16150 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 161.17 156.72 268210000 95490000 87737000 84980000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6123 1835 5970 113237;113238;113239 69213;69214 69213 2 FGLSLVR Unmodified 790.47012 0.47012364 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.386 32.882 2 0.00018306 15646 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.23 128.24 13305000000 1970900000 1903700000 1836100000 6446400 7312500 5556100 872030000 868210000 913300000 2164300 2496200 1861900 537410000 555480000 545050000 1687800 0 1497100 1074700000 1027300000 1170600000 0 0 1658400 6124 1642 5971 113240;113241;113242;113243;113244;113245;113246;113247;113248;113249;113250;113251;113252;113253;113254;113255;113256;113257;113258;113259;113260 69215;69216;69217;69218;69219;69220;69221;69222;69223;69224;69225;69226;69227;69228;69229;69230;69231;69232;69233;69234;69235;69236;69237;69238;69239;69240;69241;69242;69243 69232 29 FGMFIGCINYPECEHTELIDKPDETAITCPQCR Unmodified 4000.7562 0.7562359 1579 P45771 yrdD Uncharacterized protein YrdD yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 45.718 44.33 4 4.1602E-09 21509 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.149 89.149 73074000 21906000 9774900 17263000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7636100 7794800 8699800 0 0 0 6125 1579 5972 113261;113262;113263;113264;113265;113266 69244 69244 1 FGMHADVESADGDVHR Unmodified 1741.7478 0.74783142 1519 P39286 rsgA Putative ribosome biogenesis GTPase RsgA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 16.937 17.681 3 0.11 6554 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 28.032 28.001 67634000 10472000 8818500 8966700 0 0 0 5551100 4869600 4118200 0 0 0 3051100 3843000 4631200 0 0 0 7030700 0 6281900 0 0 0 6126 1519 5973 113267;113268;113269;113270;113271;113272;113273;113274;113275;113276;113277 69245;69246 69245 0 FGMIFHR Unmodified 906.45343 0.45342772 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS 1 1 25.967 24.39 2 0.16286 11177 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 54.525 44.776 11973000 0 0 0 0 0 0 5180000 6793000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6127 1424 5974 113278;113279 69247 69247 0 FGMMLGQGMDVQSAQEK Unmodified 1855.8267 0.82667537 276 P0A6S7 gpsA Glycerol-3-phosphate dehydrogenase [NAD(P)+] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.917 38.244 2 1.66E-10 17766 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.14 139.41 108470000 12913000 11997000 10112000 0 0 0 6298200 4290600 5497300 0 0 0 10874000 8044200 5422100 0 0 0 10914000 10313000 11791000 0 0 0 6128 276 5975 113280;113281;113282;113283;113284;113285;113286;113287;113288;113289;113290;113291 69248;69249;69250;69251;69252;69253;69254;69255 69255 8 FGNMSGQMR Unmodified 1026.4375 0.43751966 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.196 16.878 2 4.5332E-08 5485 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 194.27 194.27 6170600000 611510000 631630000 486320000 0 0 1745600 1086600000 1274500000 1148600000 0 0 2816500 184640000 156520000 161170000 1407600 0 746960 142870000 140000000 139580000 0 0 0 6129 428 5976 113292;113293;113294;113295;113296;113297;113298;113299;113300;113301;113302;113303;113304;113305;113306;113307;113308 69256;69257;69258;69259;69260;69261;69262;69263;69264;69265;69266;69267;69268;69269 69269 14 FGNMSGQMR Oxidation (M) 1042.4324 0.43243428 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 3 3 3 3 3 3 3 2 3 2 1 1 13.713 14.525 2 0.00056441 3514 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.12 110.12 419680000 37008000 44064000 43608000 0 0 0 82533000 94888000 81377000 0 0 0 10510000 5779100 10087000 0 0 0 5540400 1976900 2308700 0 0 0 6130 428 5976 113309;113310;113311;113312;113313;113314;113315;113316;113317;113318;113319;113320;113321;113322;113323;113324;113325;113326;113327;113328;113329;113330;113331;113332;113333;113334;113335;113336;113337;113338 69270;69271;69272;69273;69274;69275;69276;69277;69278 69273 210 6 FGPDAFTVQATR Unmodified 1308.6463 0.64625011 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.435 33.003 2 4.9912E-06 11875 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 133.76 129.11 1044000000 39013000 39535000 37811000 10865000 13867000 11944000 0 0 65432000 48054000 41252000 37098000 78560000 71354000 81846000 12989000 7445600 8400100 114910000 114500000 122270000 27442000 27009000 32367000 6131 1426 5977 113339;113340;113341;113342;113343;113344;113345;113346;113347;113348;113349;113350;113351;113352;113353;113354;113355;113356;113357;113358;113359;113360 69279;69280;69281;69282;69283;69284;69285;69286;69287;69288;69289;69290 69279 12 FGPHQDMMFK Unmodified 1236.542 0.54198473 1938 P77754 spy Spheroplast protein Y yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 23.602 22.786 2;3 0.00019497 10173 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 121.73 115.95 542980000 73562000 60567000 61671000 820150 0 0 51084000 48336000 46073000 2883800 3689800 3587500 26937000 28336000 25518000 0 0 0 30020000 34284000 43592000 0 2018000 0 6132 1938 5978 113361;113362;113363;113364;113365;113366;113367;113368;113369;113370;113371;113372;113373;113374;113375;113376;113377;113378;113379;113380;113381;113382;113383;113384;113385;113386;113387;113388;113389 69291;69292;69293;69294;69295;69296;69297;69298;69299;69300;69301 69291 11 FGPTNIWDTAAGHAVAAAAGAHVHDWQGKPLDYTPR Unmodified 3797.8451 0.8451247 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 3 3 3 2 2 2 2 2 2 2 2 2 2 2 45.02 43.574 4;5;6 2.1987E-17 21155 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.33 119.81 1163800000 204830000 188400000 158640000 0 3300000 5140200 121720000 80269000 119020000 0 0 0 31796000 38731000 48218000 0 0 0 52970000 63899000 46890000 0 0 0 6133 1193 5979 113390;113391;113392;113393;113394;113395;113396;113397;113398;113399;113400;113401;113402;113403;113404;113405;113406;113407;113408;113409;113410;113411;113412;113413;113414;113415;113416;113417;113418;113419;113420 69302;69303;69304;69305;69306;69307;69308;69309;69310;69311;69312;69313;69314;69315 69309 14 FGQGEAAPVVAPAPAPAPEVQTK Unmodified 2231.1586 0.15863249 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 33.507 32.046 2;3 1.0685E-14 15598 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.72 180.3 2600500000 178650000 190470000 150950000 62658000 62381000 56124000 68491000 74091000 61823000 135550000 154300000 173100000 115020000 111670000 112040000 87665000 43540000 53933000 101060000 108440000 116350000 126900000 131370000 123970000 6134 480 5980 113421;113422;113423;113424;113425;113426;113427;113428;113429;113430;113431;113432;113433;113434;113435;113436;113437;113438;113439;113440;113441;113442;113443;113444;113445;113446;113447;113448;113449;113450;113451;113452;113453;113454;113455;113456;113457;113458;113459;113460;113461;113462;113463;113464;113465;113466;113467;113468 69316;69317;69318;69319;69320;69321;69322;69323;69324;69325;69326;69327;69328;69329;69330;69331;69332;69333;69334;69335;69336;69337;69338;69339;69340;69341;69342;69343;69344;69345;69346;69347;69348;69349;69350;69351;69352;69353;69354;69355 69328 40 FGQGQVSLPGGCTIGAR Unmodified 1703.8413 0.84133787 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.471 32.031 2 1.324E-24 15150 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 219.74 212.17 435870000 49111000 49995000 44285000 0 0 0 26686000 23552000 24820000 0 0 0 27091000 25121000 24600000 0 0 0 47197000 50091000 43317000 0 0 0 6135 311 5981 113469;113470;113471;113472;113473;113474;113475;113476;113477;113478;113479;113480 69356;69357;69358;69359;69360;69361;69362;69363;69364;69365;69366;69367 69363 12 FGREEALNLENK Unmodified 1418.7154 0.7153923 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 19.608 20.133 2 0.00013526 7777 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.77 95.896 22482000 8013500 5472900 6267600 0 0 0 0 0 2728100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6136 1173 5982 113481;113482;113483;113484 69368;69369 69368 2 FGSELLAK Unmodified 863.47527 0.4752686 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 24.948 23.915 1;2 0.0037473 10496 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.55 66.53 7554500000 1158600000 1078800000 977650000 26642000 24552000 29593000 323150000 333140000 300620000 67839000 61096000 58625000 347840000 337670000 313310000 24448000 28113000 23809000 674240000 588570000 666580000 38167000 36637000 34843000 6137 67 5983 113485;113486;113487;113488;113489;113490;113491;113492;113493;113494;113495;113496;113497;113498;113499;113500;113501;113502;113503;113504;113505;113506;113507;113508;113509;113510;113511;113512;113513;113514;113515;113516;113517;113518;113519;113520;113521;113522;113523;113524;113525;113526;113527;113528;113529;113530 69370;69371;69372;69373;69374;69375;69376;69377;69378;69379;69380;69381;69382;69383;69384;69385;69386;69387;69388;69389;69390;69391 69385 15 FGSGWAWLVLK Unmodified 1262.6812 0.68117905 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.446 53.019 2 1.1323E-07 25860 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 172.23 167.24 2157100000 382480000 365290000 353130000 1989600 0 1591800 94110000 86086000 83415000 0 0 0 89486000 83110000 78340000 0 0 0 162760000 180000000 195350000 0 0 0 6138 28 5984 113531;113532;113533;113534;113535;113536;113537;113538;113539;113540;113541;113542;113543;113544 69392;69393;69394;69395;69396;69397;69398;69399;69400;69401;69402;69403 69397 12 FGSSISGSHVAIDDIEGAWNSSTQYEGGNK Unmodified 3112.401 0.40100062 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 43.154 41.576 3;4 7.6432E-42 20488 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 214.85 214.66 3942900000 499180000 396600000 379570000 1469100 1898100 1742100 313810000 295290000 279440000 0 0 2410800 237360000 263270000 242720000 0 0 0 354430000 349710000 321340000 2659700 0 0 6139 508 5985 113545;113546;113547;113548;113549;113550;113551;113552;113553;113554;113555;113556;113557;113558;113559;113560;113561;113562;113563;113564;113565;113566;113567;113568;113569;113570;113571;113572;113573 69404;69405;69406;69407;69408;69409;69410;69411;69412;69413;69414;69415;69416;69417;69418;69419;69420;69421 69406 18 FGSVRDEVNELAEELGADVVVIGSR Unmodified 2659.3453 0.34532364 1512 P39177 uspG Universal stress protein G yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 55.271 53.82 3 3.783E-22 26800 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.65 163.25 695040000 12406000 0 6596900 56130000 50281000 52702000 78700000 71135000 66893000 28269000 35175000 32304000 30180000 27129000 28252000 0 0 0 22011000 21431000 16597000 18421000 19502000 20927000 6140 1512 5986 113574;113575;113576;113577;113578;113579;113580;113581;113582;113583;113584;113585;113586;113587;113588;113589;113590;113591;113592;113593;113594;113595;113596 69422;69423;69424;69425;69426;69427;69428;69429;69430;69431 69425 10 FGSWPEVMK Unmodified 1079.511 0.51100218 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.179 35.501 2 0.00061972 17485 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.57 101.55 1821000000 185500000 168410000 154980000 338200 0 455800 156210000 141810000 159180000 0 0 0 116560000 124930000 111510000 0 0 0 157460000 177060000 166630000 0 0 0 6141 1132 5987 113597;113598;113599;113600;113601;113602;113603;113604;113605;113606;113607;113608;113609;113610 69432;69433;69434;69435;69436;69437;69438;69439;69440 69434 6 FGTNPFCVVFPR Unmodified 1439.702 0.70199085 1342 P30178 ybiC Uncharacterized oxidoreductase YbiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.872 49.565 2 2.6613E-06 24341 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.45 129.92 251220000 44593000 44039000 35825000 0 0 0 20155000 17005000 16149000 0 0 0 10101000 9103300 8698300 0 0 0 14406000 17350000 13797000 0 0 0 6142 1342 5988 113611;113612;113613;113614;113615;113616;113617;113618;113619;113620;113621;113622 69441;69442;69443;69444 69442 4 FGTSGHR Unmodified 760.36164 0.36163582 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 5.3191 6.1233 2 0.0011279 1257 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.82 135.82 134510000 0 0 0 0 0 0 0 487150 0 0 0 0 0 0 0 0 0 0 71285000 62737000 0 0 0 0 6143 1450 5989 113623;113624;113625;113626 69445;69446;69447 69445 3 FGVAAGSAATLNQGTR Unmodified 1519.7743 0.77430417 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 2 2 2 1 2 2 24.888 23.818 2;3 2.6934E-49 10132 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 274.43 264.48 957470000 63383000 70345000 58353000 0 0 0 154890000 150190000 158180000 674340 0 882010 55318000 46555000 45883000 0 0 0 50827000 54038000 47945000 0 0 0 6144 145 5990 113627;113628;113629;113630;113631;113632;113633;113634;113635;113636;113637;113638;113639;113640;113641;113642;113643;113644;113645;113646;113647;113648 69448;69449;69450;69451;69452;69453;69454;69455;69456;69457;69458;69459;69460 69457 13 FGVDAFITGEVSEQTIHSAR Unmodified 2163.0596 0.059646729 959 P0AFP6 ybgI Putative GTP cyclohydrolase 1 type 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.476 41.94 3 2.8122E-07 20290 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.84 101.55 566100000 71242000 60469000 55585000 3816500 3300700 2679800 61238000 58361000 63926000 0 0 0 29958000 31170000 28011000 0 0 0 37063000 30218000 29062000 0 0 0 6145 959 5991 113649;113650;113651;113652;113653;113654;113655;113656;113657;113658;113659;113660;113661;113662;113663 69461;69462;69463;69464;69465;69466;69467 69467 6 FGVEDGSVEGLR Unmodified 1263.6095 0.60953025 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 31.55 30.172 2 8.9186E-17 14042 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 208.25 181.86 17147000000 1430600000 1148000000 1018500000 15007000 11098000 15821000 1179000000 1134700000 1144500000 45403000 42083000 45565000 1345700000 1368900000 1278900000 11247000 9385500 11788000 1975900000 1886800000 1941500000 28895000 29081000 28596000 6146 396 5992 113664;113665;113666;113667;113668;113669;113670;113671;113672;113673;113674;113675;113676;113677;113678;113679;113680;113681;113682;113683;113684;113685;113686;113687;113688;113689;113690;113691;113692;113693;113694;113695;113696;113697;113698 69468;69469;69470;69471;69472;69473;69474;69475;69476;69477;69478;69479;69480;69481;69482;69483;69484;69485;69486;69487;69488;69489;69490;69491;69492;69493 69481 25 FGVEDGSVEGLRAEVR Unmodified 1718.8588 0.85876208 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 31.108 29.977 3 4.5949E-05 9824 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 73.022 51.191 35637000 0 0 0 3253900 3332300 3793100 0 0 0 0 0 3388200 0 0 0 4838200 3214900 4990600 0 0 0 0 4569100 4256700 6147 396 5993 113699;113700;113701;113702;113703;113704;113705;113706;113707 69494;69495;69496;69497;69498;69499;69500;69501;69502 69495 9 FGVEIYAAAK Unmodified 1067.5651 0.56514624 413 P0A8A2 yeeN Probable transcriptional regulatory protein YeeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 33.343 31.765 2 0.00027351 15416 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.5 90.729 112930000 0 0 0 0 0 0 45158000 0 0 0 0 0 0 26083000 0 0 0 0 19344000 22343000 0 0 0 0 6148 413 5994 113708;113709;113710;113711;113712;113713;113714;113715;113716 69503;69504;69505;69506;69507;69508;69509;69510;69511;69512;69513;69514 69503 12 FGVPMGYGGPHAAFFAAK Unmodified 1823.8817 0.88174613 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 40.421 38.74 2;3 3.3777E-07 17923 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 89.506 86.589 1403500000 114150000 115130000 94256000 9646300 9786300 11742000 142020000 120290000 117630000 0 0 0 77057000 83700000 74920000 0 0 0 137930000 142290000 140070000 0 0 12922000 6149 1409 5995 113717;113718;113719;113720;113721;113722;113723;113724;113725;113726;113727;113728;113729;113730;113731;113732;113733;113734;113735;113736;113737;113738;113739;113740;113741;113742;113743;113744;113745;113746 69515;69516;69517;69518;69519;69520;69521;69522;69523;69524;69525;69526;69527;69528;69529;69530;69531;69532;69533;69534 69533 20 FGVPTVTDIIK Unmodified 1188.6754 0.67542497 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.117 44.625 2 0.00029716 21645 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 92.051 88.48 489910000 39597000 44429000 37968000 420860 599470 0 44799000 38298000 39922000 0 0 0 34189000 35630000 32180000 0 0 0 44665000 47692000 49523000 0 0 0 6150 1586 5996 113747;113748;113749;113750;113751;113752;113753;113754;113755;113756;113757;113758;113759;113760 69535;69536;69537;69538 69538 4 FGVPWMINVVK Unmodified 1288.7002 0.70019993 1123 P16681 phnB Protein PhnB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 52.988 51.55 2 7.9902E-05 25077 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.69 111.64 223450000 63857000 61498000 49246000 0 0 0 10057000 11953000 14457000 0 0 0 0 1476300 0 0 0 0 3949200 3880300 3074000 0 0 0 6151 1123 5997 113761;113762;113763;113764;113765;113766;113767;113768;113769;113770 69539;69540;69541 69541 3 FGVSAAAAVAVAAGPVEAAEEK Unmodified 2014.0371 0.037120373 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 7 8 7 2 2 3 8 9 7 2 3 2 7 8 11 9 8 7 1 2 1 50.104 48.663 2;3 1.2603E-28 23297 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 181.75 159.03 2275100000 223770000 262140000 228510000 5788900 5871200 6218600 122620000 130560000 95707000 10920000 9212700 7399200 153300000 149700000 181280000 0 0 0 255020000 232190000 185490000 3236600 4066800 2060100 6152 351 5998 113771;113772;113773;113774;113775;113776;113777;113778;113779;113780;113781;113782;113783;113784;113785;113786;113787;113788;113789;113790;113791;113792;113793;113794;113795;113796;113797;113798;113799;113800;113801;113802;113803;113804;113805;113806;113807;113808;113809;113810;113811;113812;113813;113814;113815;113816;113817;113818;113819;113820;113821;113822;113823;113824;113825;113826;113827;113828;113829;113830;113831;113832;113833;113834;113835;113836;113837;113838;113839;113840;113841;113842;113843;113844;113845;113846;113847;113848;113849;113850;113851;113852;113853;113854;113855;113856;113857;113858;113859;113860;113861;113862;113863;113864;113865;113866;113867;113868;113869;113870;113871;113872;113873;113874;113875;113876;113877;113878;113879;113880;113881;113882;113883;113884 69542;69543;69544;69545;69546;69547;69548;69549;69550;69551;69552;69553;69554;69555;69556;69557;69558;69559;69560;69561;69562;69563;69564;69565;69566;69567;69568;69569;69570;69571;69572;69573;69574;69575;69576;69577;69578;69579;69580;69581;69582;69583;69584;69585;69586;69587;69588;69589;69590;69591;69592;69593;69594;69595;69596;69597;69598;69599;69600;69601;69602;69603;69604;69605;69606;69607;69608;69609;69610;69611;69612;69613;69614;69615;69616;69617;69618;69619;69620;69621;69622;69623;69624;69625;69626;69627;69628;69629;69630;69631;69632;69633;69634;69635;69636;69637;69638;69639;69640;69641;69642;69643;69644;69645;69646;69647;69648;69649;69650;69651;69652;69653;69654;69655;69656;69657;69658;69659;69660;69661;69662;69663;69664;69665;69666;69667;69668;69669;69670;69671;69672;69673;69674;69675;69676;69677;69678;69679;69680;69681;69682;69683;69684;69685;69686;69687;69688;69689;69690;69691;69692;69693;69694;69695;69696;69697;69698;69699;69700;69701;69702;69703;69704;69705;69706;69707;69708;69709;69710;69711 69631 163 FGVSAAAAVAVAAGPVEAAEEKTEFDVILK Unmodified 2959.5543 0.55425379 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 1 3 2 4 1 2 3 2 2 3 4 2 2 3 1 1 1 2 2 3 1 3 3 54.872 53.523 3;4 2.5816E-23 25874 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 168.96 168.34 928180000 70209000 59592000 61219000 30703000 31462000 6679400 26165000 34671000 26315000 36639000 38063000 43879000 54541000 42394000 43060000 5590000 3543600 12795000 76393000 75250000 64459000 23433000 30466000 30658000 6153 351 5999 113885;113886;113887;113888;113889;113890;113891;113892;113893;113894;113895;113896;113897;113898;113899;113900;113901;113902;113903;113904;113905;113906;113907;113908;113909;113910;113911;113912;113913;113914;113915;113916;113917;113918;113919;113920;113921;113922;113923;113924;113925;113926;113927;113928;113929;113930;113931;113932;113933;113934;113935;113936;113937;113938 69712;69713;69714;69715;69716;69717;69718;69719;69720;69721;69722;69723;69724 69714 12 FGVTPAYLVNADVIQIK Unmodified 1847.0193 0.019285464 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 2 1 1 1 1 52.421 51.215 2;3 1.8476E-08 25045 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.23 149.86 800700000 231810000 235080000 213650000 724010 1395600 0 0 0 16670000 0 0 0 45414000 12674000 11290000 0 0 0 0 17063000 14931000 0 0 0 6154 218 6000 113939;113940;113941;113942;113943;113944;113945;113946;113947;113948;113949;113950;113951;113952;113953 69725;69726;69727;69728;69729;69730;69731;69732;69733;69734;69735;69736 69729 10 FGVVEFDDNFR Unmodified 1343.6146 0.61461563 1641 P61887 rmlA2 Glucose-1-phosphate thymidylyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.216 42.701 2 1.5934E-05 21159 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 140.75 123.73 218260000 17789000 15331000 14881000 0 0 0 14399000 16255000 14925000 0 0 0 17085000 18039000 14769000 0 0 0 28118000 24836000 21830000 0 0 0 6155 1641 6001 113954;113955;113956;113957;113958;113959;113960;113961;113962;113963;113964;113965 69737;69738;69739;69740;69741;69742;69743;69744;69745;69746;69747 69737 9 FGWQAEEAVDIAR Unmodified 1490.7154 0.7153923 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 2 2 2 1 1 2 2 1 1 1 41.262 39.484 2 4.2932E-09 19309 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 171.85 167.55 535680000 37802000 31953000 29709000 0 5457500 0 56758000 58224000 55196000 0 0 0 41254000 23586000 26271000 0 0 0 60031000 63690000 38807000 3976700 2965200 0 6156 228 6002 113966;113967;113968;113969;113970;113971;113972;113973;113974;113975;113976;113977;113978;113979;113980;113981;113982;113983;113984;113985;113986 69748;69749;69750;69751;69752;69753;69754;69755;69756;69757;69758;69759;69760;69761;69762;69763 69757 10 FGYEFFLADLDGEVR Unmodified 1776.8359 0.83590137 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.202 53.741 2 2.3674E-07 26645 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 131.43 123.3 374280000 31649000 30872000 32173000 0 0 0 0 32574000 30266000 0 0 0 32243000 28440000 32169000 0 0 0 45421000 38570000 39898000 0 0 0 6157 1019 6003 113987;113988;113989;113990;113991;113992;113993;113994;113995;113996;113997 69764 69764 1 FGYFLPQDLAK Unmodified 1297.6707 0.67067394 1957 Q46845 yghU Disulfide-bond oxidoreductase YghU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.257 44.767 2 0.0026692 21655 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 82.749 77.966 1027700000 167730000 165720000 160460000 0 0 0 93975000 90040000 93983000 0 0 0 29969000 25798000 31539000 0 0 0 57542000 56733000 54176000 0 0 0 6158 1957 6004 113998;113999;114000;114001;114002;114003;114004;114005;114006;114007;114008;114009 69765;69766;69767;69768;69769;69770 69769 0 FGYGYVNLK Unmodified 1059.5389 0.53893149 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.13 31.77 2 0.00026055 12021 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 121.29 121.29 1180800000 49741000 0 44967000 21253000 20629000 18993000 0 0 128900000 0 29666000 37161000 99934000 97408000 85653000 9324800 6070500 7437400 147190000 149990000 153970000 24960000 20980000 26620000 6159 1427 6005 114010;114011;114012;114013;114014;114015;114016;114017;114018;114019;114020;114021;114022;114023;114024;114025;114026;114027;114028;114029;114030 69771;69772;69773;69774;69775;69776;69777;69778;69779;69780;69781;69782;69783;69784;69785;69786;69787 69775 17 FHAGANVGCGR Unmodified 1144.5196 0.5196098 355 P0A7L8 rpmA 50S ribosomal protein L27 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 11.582 12.187 2;3 1.9518E-07 3248 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 203.93 203.93 4809500000 511370000 605760000 619960000 54785000 62460000 45523000 95137000 187300000 177960000 60740000 67851000 59251000 304890000 238830000 279270000 64055000 69736000 56940000 362530000 334550000 334630000 74416000 66397000 75189000 6160 355 6006 114031;114032;114033;114034;114035;114036;114037;114038;114039;114040;114041;114042;114043;114044;114045;114046;114047;114048;114049;114050;114051;114052;114053;114054;114055;114056;114057;114058;114059;114060;114061;114062;114063;114064;114065;114066;114067;114068;114069;114070;114071;114072;114073;114074;114075;114076;114077 69788;69789;69790;69791;69792;69793;69794;69795;69796;69797;69798;69799;69800;69801;69802;69803;69804;69805;69806;69807;69808;69809;69810;69811;69812;69813;69814;69815;69816;69817;69818;69819;69820;69821;69822;69823 69801 36 FHAGQEVLLTGWGVGENHWGGLAEQAR Unmodified 2918.4212 0.42122297 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.749 42.234 3;4 1.4107E-67 20580 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 270.18 267.84 1713700000 174230000 130560000 141320000 0 0 0 229240000 187730000 166850000 0 0 0 145890000 99764000 106260000 0 0 0 111270000 106350000 114200000 0 0 0 6161 1284 6007 114078;114079;114080;114081;114082;114083;114084;114085;114086;114087;114088;114089;114090;114091;114092;114093;114094;114095;114096;114097;114098;114099;114100;114101 69824;69825;69826;69827;69828;69829;69830;69831;69832;69833;69834;69835;69836;69837;69838;69839;69840;69841;69842;69843;69844 69836 21 FHANEAAIVAQAGYPAAVTIATNMAGR Unmodified 2714.3599 0.35986827 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 1 1 1 1 2 2 2 47.579 46.146 3;4 5.0185E-16 22636 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 146.25 143.49 540280000 23425000 22780000 24607000 4452900 4783300 3788100 21558000 23564000 22745000 37821000 29765000 33647000 22332000 24366000 18253000 21647000 16840000 21795000 25084000 28740000 32866000 23248000 24980000 27199000 6162 1057 6008 114102;114103;114104;114105;114106;114107;114108;114109;114110;114111;114112;114113;114114;114115;114116;114117;114118;114119;114120;114121;114122;114123;114124;114125;114126;114127;114128;114129;114130;114131;114132 69845;69846;69847;69848;69849;69850;69851;69852;69853;69854;69855;69856;69857;69858;69859;69860;69861;69862;69863;69864;69865;69866;69867;69868;69869;69870 69865 26 FHAPGGFGVR Unmodified 1043.5301 0.53009814 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 20.549 20.933 2 0.000569 8461 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 94.539 88.308 1057700000 70744000 75448000 65795000 0 0 0 75821000 86474000 92036000 0 0 0 87456000 77342000 70394000 0 0 0 105450000 123010000 126430000 0 1291200 0 6163 1236 6009 114133;114134;114135;114136;114137;114138;114139;114140;114141;114142;114143;114144;114145 69871;69872;69873;69874;69875;69876;69877;69878;69879;69880;69881;69882 69873 12 FHAQYLLK Unmodified 1018.56 0.56000128 1405 P33018 yeiG S-formylglutathione hydrolase YeiG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.336 20.734 2 0.00049393 8020 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 135.87 107.76 167850000 37000000 45176000 34917000 0 0 0 6552400 6758800 6818600 0 0 0 3257300 4149700 3703100 0 0 0 7174800 6324500 6021300 0 0 0 6164 1405 6010 114146;114147;114148;114149;114150;114151;114152;114153;114154;114155;114156;114157 69883;69884;69885;69886;69887;69888 69887 3 FHCVLVYLR Unmodified 1205.6379 0.63793403 1600 P52061 rdgB dITP/XTP pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.718 30.379 3 0.00013737 14495 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.997 94.95 310860000 11435000 13416000 14287000 0 0 0 30344000 33614000 29895000 0 0 0 21447000 19217000 25951000 0 0 0 39872000 36597000 34791000 0 0 0 6165 1600 6011 114158;114159;114160;114161;114162;114163;114164;114165;114166;114167;114168;114169 69889;69890;69891;69892;69893;69894;69895;69896;69897;69898;69899;69900 69891 12 FHDFAQFVEEQK Unmodified 1523.7045 0.70449327 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 3 4 2 2 2 2 3 3 3 2 2 2 3 3 3 33.17 31.732 2;3 1.8048E-49 15155 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 298.7 282.74 9916900000 73241000 67092000 60399000 682850 0 0 70107000 62106000 58481000 1263600000 1188600000 1179700000 48749000 36474000 55732000 1245700000 817970000 925110000 80943000 86066000 88515000 867860000 816050000 823770000 6166 1616 6012 114170;114171;114172;114173;114174;114175;114176;114177;114178;114179;114180;114181;114182;114183;114184;114185;114186;114187;114188;114189;114190;114191;114192;114193;114194;114195;114196;114197;114198;114199;114200;114201;114202;114203;114204;114205;114206;114207;114208;114209;114210;114211;114212;114213;114214;114215;114216;114217;114218;114219;114220;114221 69901;69902;69903;69904;69905;69906;69907;69908;69909;69910;69911;69912;69913;69914;69915;69916;69917;69918;69919;69920;69921;69922;69923;69924;69925;69926;69927;69928;69929;69930;69931;69932;69933;69934;69935;69936;69937;69938;69939;69940;69941;69942;69943;69944;69945;69946;69947;69948;69949 69930 46 FHDFAQFVEEQKNYRPVADAVAMLLAGNK Unmodified 3307.6448 0.6448169 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 3 3 2 3 3 53.071 52.182 3;4;5 2.0741E-32 20162 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 201.98 201.45 971390000 0 0 0 0 0 0 0 0 0 63194000 104990000 83321000 0 0 0 113040000 232480000 177650000 0 0 0 65388000 67114000 64207000 6167 1616 6013 114222;114223;114224;114225;114226;114227;114228;114229;114230;114231;114232;114233;114234;114235;114236;114237;114238;114239;114240;114241;114242;114243;114244;114245;114246 69950;69951;69952;69953;69954;69955;69956;69957;69958;69959;69960;69961;69962;69963;69964;69965;69966 69950 17 FHDIPNTAAHAVAAAADLGVWMVNVHASGGAR Unmodified 3225.589 0.58903336 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 2 2 2 51.205 49.989 4;5 2.9118E-13 24288 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 115.92 113.81 934270000 159640000 147800000 127640000 0 0 0 20803000 22290000 0 0 0 0 70186000 53106000 35696000 0 0 0 100740000 95925000 100440000 0 0 0 6168 181 6014 114247;114248;114249;114250;114251;114252;114253;114254;114255;114256;114257;114258;114259;114260;114261;114262;114263;114264;114265 69967;69968;69969;69970;69971;69972;69973;69974;69975;69976;69977;69978 69967 12 FHDWQPDFTPANAR Unmodified 1700.7696 0.76955314 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 30.823 29.458 2;3 1.8264E-15 13675 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 201.75 185.11 407150000 46967000 38447000 37373000 0 0 0 31766000 30173000 38259000 0 0 0 23560000 28016000 25364000 0 0 0 39158000 39431000 28632000 0 0 0 6169 433 6015 114266;114267;114268;114269;114270;114271;114272;114273;114274;114275;114276;114277;114278;114279;114280;114281;114282;114283;114284;114285;114286;114287;114288 69979;69980;69981;69982;69983;69984;69985;69986;69987;69988;69989;69990 69989 12 FHFIADK Unmodified 876.44939 0.4493882 1242 P24203 yjiA Uncharacterized GTP-binding protein YjiA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 18.264 18.903 2 0.0075927 7132 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 90.661 78.401 180490000 16977000 14902000 17228000 0 0 0 14115000 0 9623200 0 0 0 14003000 17882000 16857000 0 0 0 20473000 19168000 19263000 0 0 0 6170 1242 6016 114289;114290;114291;114292;114293;114294;114295;114296;114297;114298;114299 69991;69992;69993;69994;69995;69996;69997;69998 69992 7 FHGLQDQEAR Unmodified 1199.5683 0.56833414 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.405 13.237 2;3 5.7444E-09 3857 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 191.45 169.36 4087700000 298150000 241540000 295350000 0 0 0 377580000 379310000 408710000 0 0 0 356840000 323930000 327950000 0 0 0 374890000 365040000 338430000 0 0 0 6171 448 6017 114300;114301;114302;114303;114304;114305;114306;114307;114308;114309;114310;114311;114312;114313;114314;114315;114316;114317;114318;114319;114320;114321;114322;114323 69999;70000;70001;70002;70003;70004;70005;70006;70007;70008;70009;70010;70011;70012;70013 70002 15 FHGLQDQEVR Unmodified 1227.5996 0.59963426 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 14.343 15.114 2;3 1.8868E-05 5040 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 174.48 159.33 4154600000 373370000 268120000 309940000 227200 0 0 640760000 642090000 617320000 0 0 0 224890000 220510000 181980000 0 0 0 224040000 223780000 227580000 0 0 0 6172 449 6018 114324;114325;114326;114327;114328;114329;114330;114331;114332;114333;114334;114335;114336;114337;114338;114339;114340;114341;114342;114343;114344;114345;114346;114347;114348 70014;70015;70016;70017;70018;70019;70020;70021;70022;70023;70024;70025;70026;70027;70028;70029;70030;70031 70023 18 FHGMYQQDDR Unmodified 1295.5353 0.53531945 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.631 13.463 2;3 8.2263E-06 4053 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 181.55 181.55 1217600000 114450000 134780000 122590000 0 0 0 80447000 104430000 95679000 0 0 0 88072000 88313000 71148000 0 0 0 106420000 113510000 97747000 0 0 0 6173 1143 6019 114349;114350;114351;114352;114353;114354;114355;114356;114357;114358;114359;114360;114361;114362;114363;114364;114365;114366;114367;114368;114369;114370;114371;114372 70032;70033;70034;70035;70036;70037;70038;70039;70040;70041;70042;70043;70044;70045;70046;70047;70048;70049;70050;70051;70052;70053;70054;70055 70044 24 FHGPIIGAGAYTVEK Unmodified 1558.8144 0.81437807 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 2 2 2 2 2 2 28.07 26.823 2;3 8.0459E-15 12170 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 221.6 204.23 1023700000 30781000 36483000 7159200 0 0 0 99581000 98866000 98853000 1560100 0 1412400 109570000 85819000 88631000 0 0 0 117020000 125210000 122740000 0 0 0 6174 1890 6020 114373;114374;114375;114376;114377;114378;114379;114380;114381;114382;114383;114384;114385;114386;114387;114388;114389;114390;114391;114392;114393;114394;114395;114396;114397 70056;70057;70058;70059;70060;70061;70062;70063;70064;70065;70066;70067;70068;70069;70070;70071;70072;70073 70064 14 FHGVGLATDIVESSAK Unmodified 1629.8362 0.83623572 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS 2 1 1 31.652 30.51 2;3 2.0691E-06 14398 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.03 96.565 81629000 38415000 20633000 22581000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6175 204 6021 114398;114399;114400;114401 70074;70075 70074 1 FHHQWLPDELR Unmodified 1476.7262 0.72623176 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.384 24.295 3 0.00010901 11164 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.417 78.555 208340000 17202000 18440000 19513000 0 0 0 27698000 25058000 27502000 0 0 0 12464000 9523900 8785400 0 0 0 14905000 13267000 13980000 0 0 0 6176 1155 6022 114402;114403;114404;114405;114406;114407;114408;114409;114410;114411;114412;114413 70076;70077;70078 70076 2 FHLMDFGTR Unmodified 1122.528 0.52804923 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 1 2 2 2 2 1 33.419 31.956 2;3 0.00035006 15559 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 101.72 93.501 311230000 21572000 14248000 15226000 0 0 0 28422000 22421000 24403000 0 0 0 27038000 19277000 21330000 0 0 0 38773000 34418000 43655000 0 0 443620 6177 1148 6023 114414;114415;114416;114417;114418;114419;114420;114421;114422;114423;114424;114425;114426;114427;114428;114429;114430;114431;114432;114433;114434;114435;114436;114437 70079;70080;70081;70082;70083;70084;70085;70086;70087;70088;70089;70090 70080 12 FHNVTNGITPR Unmodified 1254.6469 0.64691881 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 2 2 15.043 15.56 2;3 9.2489E-05 5089 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 148.69 145.93 277960000 7289100 9541800 0 0 0 0 28720000 29304000 25961000 12138000 20559000 19691000 14218000 12882000 4577200 3700300 9638700 7080700 20980000 23791000 24734000 3157200 0 0 6178 30 6024 114438;114439;114440;114441;114442;114443;114444;114445;114446;114447;114448;114449;114450;114451;114452;114453;114454;114455;114456;114457;114458;114459;114460;114461;114462;114463;114464;114465;114466;114467;114468 70091;70092;70093;70094;70095;70096;70097;70098;70099;70100;70101;70102;70103 70100 9 FHPAWHLLMQALCTNR Unmodified 1993.9767 0.97672592 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 44.761 42.978 3 0.085059 21214 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 36.583 35.958 44480000 4920200 7054200 6620800 0 0 0 8790400 6959700 7887700 2247500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6179 1413 6025 114469;114470;114471;114472;114473;114474;114475 70104 70104 0 FHPSVNLSILK Unmodified 1253.7132 0.71320746 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.434 31.967 3 8.3277E-05 14981 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.113 83.158 602950000 189770000 133410000 135180000 0 1257600 1196800 16999000 16045000 16043000 0 0 0 11485000 10384000 10214000 0 0 0 21801000 18909000 20256000 0 0 0 6180 26 6026 114476;114477;114478;114479;114480;114481;114482;114483;114484;114485;114486;114487;114488;114489 70105;70106;70107;70108;70109;70110;70111;70112;70113;70114;70115 70113 11 FHPWSIEEIVASEQSA Unmodified 1828.8632 0.86317875 1598 P52007 yecM Protein YecM yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 52.16 50.898 2 4.5184E-06 24615 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 89.827 86.294 122400000 0 0 22141000 0 0 0 11757000 14419000 12328000 0 0 0 12936000 0 10547000 0 0 0 13361000 11950000 12958000 0 0 0 6181 1598 6027 114490;114491;114492;114493;114494;114495;114496;114497;114498 70116;70117 70116 2 FHQEMLNLFLK Unmodified 1418.738 0.738042 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.807 40.954 3 7.0671E-06 20037 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.52 109.61 171590000 8770400 5137700 7702100 1055600 1272300 1127800 21670000 15827000 16394000 8502100 8092900 5461400 10301000 10075000 8300500 0 0 0 14068000 12606000 12863000 0 0 2365700 6182 27 6028 114499;114500;114501;114502;114503;114504;114505;114506;114507;114508;114509;114510;114511;114512;114513;114514;114515;114516;114517 70118;70119;70120;70121;70122;70123;70124;70125;70126;70127;70128;70129 70123 10 FHQWFGSWFS Unmodified 1327.5774 0.57744226 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.775 52.483 2 0.035386 24596 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 55.37 52.211 99464000 2653800 3146500 4116900 0 0 0 6006100 8298900 7123400 5131900 5376000 5456700 6380900 8583000 8398200 2187000 0 1764000 7641300 7498600 6701700 2999400 0 0 6183 189 6029 114518;114519;114520;114521;114522;114523;114524;114525;114526;114527;114528;114529;114530;114531;114532;114533;114534;114535 70130;70131 70131 2 FHTLSGGKPQVEGAEDYTDSDD Unmodified 2367.0139 0.013878328 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 23.811 22.962 2;3 3.1185E-34 10255 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 258.41 258.41 1334600000 150610000 118430000 118550000 0 0 0 81325000 89834000 85173000 0 0 0 114880000 99948000 100030000 0 0 0 113540000 125450000 136770000 0 0 0 6184 793 6030 114536;114537;114538;114539;114540;114541;114542;114543;114544;114545;114546;114547;114548;114549;114550;114551;114552;114553;114554;114555;114556;114557;114558;114559 70132;70133;70134;70135;70136;70137;70138;70139;70140;70141;70142;70143;70144 70133 13 FIAAAANYPENIDPWHILQTGGK Unmodified 2525.2703 0.27030821 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.77 50.522 2 7.5146E-31 23793 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 203.04 202.64 147430000 10607000 8916400 9192200 0 0 0 17164000 17398000 14940000 0 0 0 13618000 13146000 8368700 0 0 0 11333000 10083000 12663000 0 0 0 6185 1959 6031 114560;114561;114562;114563;114564;114565;114566;114567;114568;114569;114570;114571 70145;70146;70147 70146 3 FIAATNVNDTVPR Unmodified 1416.7361 0.73612775 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 27.16 25.908 2 1.0276E-31 11636 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 265.94 245.61 1485500000 228730000 203170000 169220000 2737000 2926200 2832600 69726000 69640000 66358000 3866800 1628000 0 87673000 82849000 90798000 0 0 0 145580000 127890000 129090000 0 0 803980 6186 52 6032 114572;114573;114574;114575;114576;114577;114578;114579;114580;114581;114582;114583;114584;114585;114586;114587;114588;114589;114590;114591;114592 70148;70149;70150;70151;70152;70153;70154;70155;70156;70157;70158;70159;70160;70161 70157 14 FIADPFAPGER Unmodified 1218.6033 0.60332266 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 38.609 36.891 2 0.00018359 17067 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 106.6 96.076 133140000 0 4672400 4345900 0 0 0 6413500 7297400 7642300 0 0 0 0 14828000 10902000 0 0 0 25391000 29119000 22527000 0 0 0 6187 1070 6033 114593;114594;114595;114596;114597;114598;114599;114600;114601;114602 70162;70163;70164;70165 70165 4 FIALSAK Unmodified 748.44833 0.44832557 1915 P77544 yfcF Glutathione S-transferase YfcF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.218 22.065 2 0.020311 9400 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.833 43.904 159910000 19101000 17322000 17429000 0 0 0 19471000 17125000 15348000 0 0 0 7386500 6366700 7777500 0 0 0 10193000 11687000 10699000 0 0 0 6188 1915 6034 114603;114604;114605;114606;114607;114608;114609;114610;114611;114612;114613;114614 70166;70167;70168;70169;70170;70171;70172;70173;70174 70168 9 FIAPSQFK Unmodified 936.5069 0.50690308 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.991 24.783 2 0.0021725 10725 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 102.71 77.095 453990000 0 0 0 492280 0 0 63399000 56773000 58531000 0 0 0 58559000 0 45288000 0 0 0 58323000 61232000 51391000 0 0 0 6189 1424 6035 114615;114616;114617;114618;114619;114620;114621;114622;114623 70175;70176;70177 70177 1 FIAQPALAIALQK Unmodified 1382.8286 0.82857157 1697 P64610 yrbL Uncharacterized protein YrbL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.97 43.186 2 3.0458E-05 21417 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 104.17 103.9 99314000 0 0 0 0 0 0 13026000 11187000 10801000 5457600 6515000 5642300 5972900 5833000 6273100 0 0 0 7612100 8018200 6456400 2653900 2001700 1863900 6190 1697 6036 114624;114625;114626;114627;114628;114629;114630;114631;114632;114633;114634;114635;114636;114637;114638 70178;70179;70180;70181;70182;70183;70184 70181 7 FIAQQLGVSR Unmodified 1117.6244 0.62439245 574 P0AA43 rsuA Ribosomal small subunit pseudouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.205 26.012 2 0.00014602 11702 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 126.24 117.82 202480000 30422000 36089000 27769000 4274300 5456500 5076200 8685900 8379600 9946600 6570600 6348100 7012000 5226400 4161400 4819300 2482100 1600500 2227500 8212400 0 7700100 4162400 3234800 2622300 6191 574 6037 114639;114640;114641;114642;114643;114644;114645;114646;114647;114648;114649;114650;114651;114652;114653;114654;114655;114656;114657;114658;114659;114660;114661 70185;70186;70187;70188;70189;70190 70189 6 FIATNPDTHGR Unmodified 1227.5996 0.59963426 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 1 1 1 1 1 1 1 1 12.282 13.149 2 4.3302E-14 2821 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 222.18 213.31 313450000 36029000 5334500 6059100 13587000 15401000 12623000 27098000 31883000 27756000 0 0 0 28764000 27865000 28890000 0 0 0 27443000 0 24715000 0 0 0 6192 906 6038 114662;114663;114664;114665;114666;114667;114668;114669;114670;114671;114672;114673;114674;114675;114676 70191;70192;70193;70194;70195;70196;70197;70198;70199;70200 70196 9 FICDRPLEVRPVEFHNPLK Unmodified 2365.2365 0.23650566 1017 P0AGG2 tesB Acyl-CoA thioesterase 2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 1 2 2 2 2 33.711 32.254 4;5 0.0012342 15210 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 62.203 57.852 705770000 113330000 100200000 28203000 0 0 0 60202000 56398000 50248000 0 0 0 49236000 17094000 46746000 0 0 0 67003000 61795000 55315000 0 0 0 6193 1017 6039 114677;114678;114679;114680;114681;114682;114683;114684;114685;114686;114687;114688;114689;114690;114691;114692;114693;114694;114695;114696;114697;114698 70201;70202;70203;70204;70205;70206;70207;70208;70209;70210;70211 70209 11 FICGTQDSHK Unmodified 1191.5343 0.53425682 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 2 2 11.168 12.001 2;3 6.2068E-09 3065 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 190.51 180.92 3606800000 334200000 300510000 282280000 0 0 0 346330000 338120000 323910000 0 0 0 300220000 250510000 246110000 0 0 0 306760000 286630000 291190000 0 0 0 6194 635 6040 114699;114700;114701;114702;114703;114704;114705;114706;114707;114708;114709;114710;114711;114712;114713;114714;114715;114716;114717;114718;114719;114720;114721;114722;114723 70212;70213;70214;70215;70216;70217;70218;70219;70220;70221;70222;70223;70224;70225;70226;70227 70217 16 FICIADASK Unmodified 1023.5059 0.5059168 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 25.48 24.364 2 0.00087717 11207 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.933 88.947 4124000000 447890000 432910000 370260000 0 2619200 2162600 341560000 340620000 311360000 0 1332400 0 280040000 284910000 259650000 0 0 0 329150000 344450000 375050000 0 0 0 6195 382 6041 114724;114725;114726;114727;114728;114729;114730;114731;114732;114733;114734;114735;114736;114737;114738;114739 70228;70229;70230;70231;70232;70233;70234;70235;70236;70237;70238 70228 11 FIDAMLAIR Unmodified 1048.5739 0.57393679 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.988 42.707 2 4.5544E-05 19805 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.17 132.18 825570000 81061000 79884000 62939000 0 0 0 0 0 0 10861000 10612000 9161400 84912000 61606000 71298000 5391400 2965200 4200800 121800000 108420000 110460000 0 0 0 6196 1409 6042 114740;114741;114742;114743;114744;114745;114746;114747;114748;114749;114750;114751;114752;114753;114754 70239;70240;70241;70242;70243;70244;70245;70246;70247 70247 9 FIDELTDK Unmodified 979.48623 0.48622722 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.41 25.178 2 0.0029169 11372 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 96.492 81.231 633970000 97258000 0 81585000 810490 1050700 856050 0 0 0 1953100 2151800 1721700 0 78741000 69816000 0 0 0 90097000 95490000 111230000 0 1214800 0 6197 1144 6043 114755;114756;114757;114758;114759;114760;114761;114762;114763;114764;114765;114766;114767;114768;114769;114770 70248;70249;70250;70251;70252;70253;70254 70249 7 FIDELTDKLK Unmodified 1220.6653 0.66525421 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 31.261 29.941 3 0.098948 11154 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 32.731 23.832 9233500 0 0 0 0 0 0 0 0 0 0 0 0 690470 0 0 2128600 0 0 0 0 0 2108000 1916800 2389600 6198 1144 6044 114771;114772;114773;114774;114775;114776;114777 70255;70256;70257;70258;70259 70257 5 FIDGMHEAGMK Unmodified 1234.5475 0.54746404 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 18.993 19.559 2;3 0.00011748 7347 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.52 109.69 405850000 34284000 34915000 30411000 0 0 0 28687000 33982000 26271000 0 0 0 36072000 32789000 30541000 0 0 0 37604000 44150000 36145000 0 0 0 6199 1794 6045 114778;114779;114780;114781;114782;114783;114784;114785;114786;114787;114788;114789;114790;114791;114792;114793;114794;114795;114796;114797;114798;114799;114800;114801 70260;70261;70262;70263;70264;70265;70266;70267;70268;70269 70267 10 FIDKVNDAK Unmodified 1048.5553 0.55530983 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 11.874 12.785 2 0.0075521 3591 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.264 24.107 54741000 0 0 0 663820 0 953730 10148000 10389000 9729800 0 0 0 0 5260000 5254900 0 0 0 7570200 4771400 0 0 0 0 6200 1510 6046 114802;114803;114804;114805;114806;114807;114808;114809;114810 70270;70271 70270 2 FIDQSISANTNYDPSR Unmodified 1826.8435 0.84350594 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.339 28.983 2 6.2634E-51 13463 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 293.62 239.86 1129000000 93627000 87784000 80213000 0 0 0 88819000 83616000 84408000 0 0 0 77394000 71209000 81552000 0 0 0 125500000 129380000 125500000 0 0 0 6201 29 6047 114811;114812;114813;114814;114815;114816;114817;114818;114819;114820;114821;114822 70272;70273;70274;70275;70276;70277;70278;70279;70280;70281;70282;70283 70279 12 FIEDLLDK Unmodified 991.52261 0.52261272 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.262 37.588 2 0.0066875 18684 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.568 65.903 249650000 11731000 8817600 8220900 0 0 0 17905000 22065000 20740000 0 0 0 24100000 22448000 22812000 0 0 0 29856000 30241000 30714000 0 0 0 6202 180 6048 114823;114824;114825;114826;114827;114828;114829;114830;114831;114832;114833;114834 70284;70285;70286;70287;70288;70289;70290;70291;70292;70293;70294 70284 11 FIEEEKK Unmodified 921.48075 0.48074791 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.006 11.467 2 0.0028424 2840 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 111.28 87.306 289390000 49562000 39747000 41703000 2883300 0 0 32018000 0 0 12896000 14505000 13294000 0 34600000 32163000 3662500 0 1784400 0 0 0 3895700 3667400 3007900 6203 899 6049 114835;114836;114837;114838;114839;114840;114841;114842;114843;114844;114845;114846;114847;114848;114849;114850;114851;114852 70295;70296;70297;70298;70299;70300;70301 70299 7 FIEFPEVK Unmodified 1007.5328 0.53278348 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.94 36.328 2 0.0019749 17578 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.37 91.158 273820000 5849400 6703800 5207700 1640400 1182800 0 20187000 18229000 16687000 8832300 8040700 8508900 21980000 19153000 18305000 3360800 3326800 1934400 30886000 27829000 28514000 6349600 5223100 5892200 6204 1494 6050 114853;114854;114855;114856;114857;114858;114859;114860;114861;114862;114863;114864;114865;114866;114867;114868;114869;114870;114871;114872;114873;114874;114875 70302;70303;70304;70305;70306;70307 70303 6 FIEPVLR Unmodified 872.51199 0.51198846 1241 P24202 mrr Mrr restriction system protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.356 28.999 2 0.0023108 13532 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.54 92.087 230740000 15797000 16125000 15694000 0 0 0 27103000 22327000 25842000 0 0 0 15239000 16556000 15576000 0 0 0 19609000 21356000 19515000 0 0 0 6205 1241 6051 114876;114877;114878;114879;114880;114881;114882;114883;114884;114885;114886;114887 70308;70309;70310;70311;70312;70313;70314;70315;70316;70317;70318 70311 11 FIEQDPEGQYGLEAAFR Unmodified 1968.9218 0.92175626 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 4 5 4 2 2 3 7 8 8 2 3 2 5 9 5 45.216 43.925 2;3 6.3974E-31 17410 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 275.63 260.76 47958000000 321790000 328190000 267100000 22890000 17767000 23331000 217490000 209550000 214110000 2668700000 2437300000 2528500000 285380000 276300000 239330000 10747000000 8187900000 7862600000 331590000 337720000 318620000 2877000000 3452600000 3785600000 6206 463 6052 114888;114889;114890;114891;114892;114893;114894;114895;114896;114897;114898;114899;114900;114901;114902;114903;114904;114905;114906;114907;114908;114909;114910;114911;114912;114913;114914;114915;114916;114917;114918;114919;114920;114921;114922;114923;114924;114925;114926;114927;114928;114929;114930;114931;114932;114933;114934;114935;114936;114937;114938;114939;114940;114941;114942;114943;114944;114945;114946;114947;114948;114949;114950;114951;114952;114953;114954;114955;114956;114957;114958;114959;114960;114961;114962;114963;114964;114965;114966;114967;114968;114969;114970;114971;114972;114973;114974 70319;70320;70321;70322;70323;70324;70325;70326;70327;70328;70329;70330;70331;70332;70333;70334;70335;70336;70337;70338;70339;70340;70341;70342;70343;70344;70345;70346;70347;70348;70349;70350;70351;70352;70353;70354;70355;70356;70357;70358;70359;70360;70361;70362;70363;70364;70365;70366;70367;70368;70369;70370;70371;70372;70373;70374;70375;70376;70377;70378;70379;70380;70381;70382;70383;70384;70385;70386;70387;70388;70389;70390;70391;70392;70393;70394;70395;70396;70397;70398;70399;70400;70401;70402;70403;70404;70405;70406;70407 70345 86 FIESVMEPLR Unmodified 1219.6271 0.62709457 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 38.893 37.213 2 1.8129E-06 18025 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 160.88 160.88 1329100000 228940000 221530000 201180000 0 1143600 0 55749000 50656000 47915000 0 0 0 65751000 72181000 83688000 0 0 0 110730000 101530000 88133000 0 0 0 6207 104 6053 114975;114976;114977;114978;114979;114980;114981;114982;114983;114984;114985;114986;114987 70408;70409;70410;70411;70412;70413;70414;70415 70411 8 FIFLEEGDIAEITR Unmodified 1651.8457 0.84573777 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 2 3 3 1 1 4 4 2 4 4 4 53.366 51.938 2;3 1.3435E-11 25098 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 190.56 187.23 1420700000 119180000 115670000 105080000 0 0 0 105830000 110950000 97944000 1308500 0 1327300 121130000 113900000 90696000 0 0 0 153580000 144030000 140080000 0 0 0 6208 1137 6054 114988;114989;114990;114991;114992;114993;114994;114995;114996;114997;114998;114999;115000;115001;115002;115003;115004;115005;115006;115007;115008;115009;115010;115011;115012;115013;115014;115015;115016;115017;115018;115019;115020;115021;115022;115023;115024;115025;115026;115027;115028;115029;115030;115031 70416;70417;70418;70419;70420;70421;70422;70423;70424;70425;70426;70427;70428;70429;70430;70431;70432;70433;70434 70424 15 FIGELPEECVEEVR Unmodified 1704.8029 0.80288668 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.793 37.478 2 3.0472E-09 13830 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 190.86 183.93 292540000 20678000 21356000 14545000 0 0 0 17185000 19098000 14698000 0 0 0 15271000 15758000 13115000 33286000 20251000 19963000 24954000 20540000 21841000 0 0 0 6209 80 6055 115032;115033;115034;115035;115036;115037;115038;115039;115040;115041;115042;115043;115044;115045;115046 70435;70436;70437;70438 70435 4 FIGHEQHVALDTLLPAPEFGR Unmodified 2346.2121 0.21206505 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.091 40.392 3;4 5.5988E-22 20187 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 171.47 170.18 1252900000 106500000 118820000 117150000 0 0 0 120810000 122000000 103780000 0 0 0 86412000 81858000 97927000 0 0 0 97725000 98753000 101120000 0 0 0 6210 111 6056 115047;115048;115049;115050;115051;115052;115053;115054;115055;115056;115057;115058;115059;115060;115061;115062;115063;115064;115065;115066;115067;115068;115069;115070 70439;70440;70441;70442;70443;70444;70445;70446;70447;70448;70449;70450;70451;70452;70453;70454;70455;70456;70457;70458;70459;70460 70440 22 FIGHTMADAMPLDPDKNAAR Unmodified 2170.0299 0.02994328 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 29.272 27.416 4 6.7326E-05 10245 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 75.97 72.633 35964000 0 0 0 0 1961700 1691900 0 0 0 8465900 7929100 7004700 0 0 0 0 0 0 0 0 0 3772100 2950200 2188300 6211 1058 6057 115071;115072;115073;115074;115075;115076;115077;115078 70461;70462;70463;70464;70465 70463 5 FIGLPVGEVVK Unmodified 1156.6856 0.68559572 1815 P76104 ydcP Uncharacterized protease YdcP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.524 41.913 2 0.060848 20956 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 43.282 25.896 76612000 10031000 9755000 10388000 999100 872580 949980 4876100 5247000 3878800 0 0 697790 3541600 3268300 3092100 0 0 0 6175700 5322100 5882200 1634700 0 0 6212 1815 6058 115079;115080;115081;115082;115083;115084;115085;115086;115087;115088;115089;115090;115091;115092;115093;115094;115095 70466 70466 1 FIGMGEIDDEGR Unmodified 1337.5922 0.59216562 1618 P60340 truB tRNA pseudouridine synthase B yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.903 33.455 2 2.7496E-05 15985 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.02 112.38 149380000 10913000 9334500 8425500 0 0 0 11180000 9122000 12575000 0 0 0 13984000 14986000 14420000 0 0 0 14985000 15270000 14183000 0 0 0 6213 1618 6059 115096;115097;115098;115099;115100;115101;115102;115103;115104;115105;115106;115107 70467;70468;70469;70470;70471;70472 70470 6 FIGPAGLLAAYR Unmodified 1247.7026 0.70264277 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.188 47.792 2 3.2989E-06 23595 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 136.27 136.27 1056700000 70159000 74787000 71704000 11382000 12481000 11499000 42360000 45902000 45475000 18224000 16983000 15014000 59131000 53565000 49581000 0 0 0 131510000 130740000 129830000 23706000 21774000 20919000 6214 150 6060 115108;115109;115110;115111;115112;115113;115114;115115;115116;115117;115118;115119;115120;115121;115122;115123;115124;115125;115126;115127;115128 70473;70474;70475;70476;70477;70478;70479;70480;70481;70482;70483;70484;70485;70486;70487;70488;70489;70490;70491;70492 70477 20 FIGSHLAVAFESDPEAEIR Unmodified 2087.0324 0.032369346 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 2 1 1 2 2 2 2 2 1 1 1 43.235 41.595 3 1.8925E-07 18497 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 108.49 106.01 301930000 26675000 0 20040000 1708300 1623400 1653800 39916000 4016900 4671100 0 0 0 27077000 23408000 25939000 0 0 0 33539000 47151000 32245000 0 5380000 6890400 6215 1197 6061 115129;115130;115131;115132;115133;115134;115135;115136;115137;115138;115139;115140;115141;115142;115143;115144;115145;115146;115147;115148;115149;115150 70493;70494;70495;70496;70497;70498;70499;70500;70501 70501 9 FIHALDELSR Unmodified 1199.6299 0.62987176 1598 P52007 yecM Protein YecM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 2 2 2 1 2 3 2 28.918 27.675 2;3 3.4171E-05 13124 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.78 130.27 346520000 35838000 31871000 41231000 0 0 0 29751000 27430000 26231000 0 0 0 20778000 24649000 16008000 0 0 0 31724000 29732000 31278000 0 0 0 6216 1598 6062 115151;115152;115153;115154;115155;115156;115157;115158;115159;115160;115161;115162;115163;115164;115165;115166;115167;115168;115169;115170;115171;115172;115173;115174;115175;115176 70502;70503;70504;70505;70506;70507;70508;70509;70510;70511;70512;70513;70514 70503 12 FIIADTPGHEQYTR Unmodified 1646.8053 0.80526994 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 1 24.903 23.858 2;3 1.9744E-20 10876 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.78 220.14 3638300000 238140000 259870000 227160000 4927400 5006700 7726100 283920000 305180000 284410000 8027000 6952800 6581500 252660000 212530000 192850000 3733400 3601500 2844500 433420000 464150000 425050000 5209500 4393100 0 6217 1218 6063 115177;115178;115179;115180;115181;115182;115183;115184;115185;115186;115187;115188;115189;115190;115191;115192;115193;115194;115195;115196;115197;115198;115199;115200;115201;115202;115203;115204;115205;115206;115207;115208;115209;115210;115211;115212;115213;115214;115215;115216;115217 70515;70516;70517;70518;70519;70520;70521;70522;70523;70524;70525;70526;70527;70528;70529;70530;70531;70532;70533;70534;70535;70536;70537;70538;70539;70540;70541;70542 70517 26 FIKPAELLGWVDQTSLK Unmodified 1944.072 0.072049316 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 52.33 51.133 2;3 1.7766E-08 24830 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 158.52 142.17 465640000 76396000 72060000 90068000 5919900 8491600 10230000 0 0 0 6725000 7459100 7231500 0 10971000 72629000 0 0 2601500 0 77699000 0 5143600 6673800 5346600 6218 1146 6064 115218;115219;115220;115221;115222;115223;115224;115225;115226;115227;115228;115229;115230;115231;115232;115233;115234;115235 70543;70544;70545;70546;70547;70548;70549;70550;70551;70552;70553;70554;70555 70554 11 FILLDEPFAGVDPISVIDIK Unmodified 2200.2031 0.20312307 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.811 54.363 2 3.747E-05 20008 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 83.633 77.791 103460000 3757000 6887800 7580100 0 5646800 5886100 1687900 1392400 3195000 0 0 0 11594000 9576300 9347900 0 0 0 15990000 17968000 0 0 2948800 0 6219 559 6065 115236;115237;115238;115239;115240;115241;115242;115243;115244;115245;115246;115247;115248;115249 70556;70557 70557 1 FILLDEPFAGVDPISVIDIKR Unmodified 2356.3042 0.3042341 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.932 53.516 3 0.017251 19596 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 44.054 41.709 77164000 0 0 0 9429400 10341000 11334000 0 0 0 8076500 13784000 8882100 0 0 0 0 0 0 0 0 0 6033200 3506800 5777100 6220 559 6066 115250;115251;115252;115253;115254;115255;115256;115257;115258 70558 70558 0 FILVADELSATTLAELPQDR Unmodified 2201.158 0.15796379 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 45.697 44.231 3 0.15747 21960 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 14.77 1.3145 690870000 242780000 255310000 0 0 0 0 49730000 53643000 49623000 0 0 0 6718700 0 8188200 0 0 0 9875600 7695600 7304800 0 0 0 6221 1459 6067 115259;115260;115261;115262;115263;115264;115265;115266;115267;115268 70559;70560 70560 2 FIMDKHPEITTVPYDSYQNAK Unmodified 2496.1995 0.19951103 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 31.719 30.357 3;4 2.8795E-15 14227 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142.43 138.54 460230000 64921000 75677000 68634000 0 0 719480 25647000 26231000 23568000 0 0 0 20960000 21909000 23416000 0 0 0 33633000 37807000 37111000 0 0 0 6222 1349 6068 115269;115270;115271;115272;115273;115274;115275;115276;115277;115278;115279;115280;115281;115282;115283;115284;115285;115286;115287;115288;115289;115290;115291;115292;115293 70561;70562;70563;70564;70565;70566;70567;70568;70569;70570;70571;70572 70569 12 FIMGSVSDR Unmodified 1010.4855 0.48551571 178 P08194 glpT Glycerol-3-phosphate transporter yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.905 23.795 2 0.0001886 10608 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.56 118.32 414800000 9836800 10239000 8775000 1373200 1370000 1413100 41874000 41280000 41590000 11074000 10393000 9232500 43440000 39885000 35078000 0 0 0 33863000 32941000 27054000 4905800 4623000 4557700 6223 178 6069 115294;115295;115296;115297;115298;115299;115300;115301;115302;115303;115304;115305;115306;115307;115308;115309;115310;115311;115312;115313;115314 70573;70574;70575;70576;70577;70578;70579;70580;70581;70582;70583 70577 11 FINELLPVIDSLDR Unmodified 1642.893 0.89302232 211 P09372 grpE Protein GrpE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 2 2 2 2 2 2 2 3 2 2 2 3 1 3 1 1 1 2 2 2 1 2 1 55.344 54 2;3 1.7792E-11 26625 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.55 129.02 8421200000 215600000 2582600 887420000 22337000 31458000 21370000 981440000 991380000 990050000 135280000 155250000 148210000 870400000 264490000 878240000 24166000 26838000 33829000 1084300000 261150000 256210000 46727000 59690000 32771000 6224 211 6070 115315;115316;115317;115318;115319;115320;115321;115322;115323;115324;115325;115326;115327;115328;115329;115330;115331;115332;115333;115334;115335;115336;115337;115338;115339;115340;115341;115342;115343;115344;115345;115346;115347;115348;115349;115350;115351;115352;115353;115354;115355;115356;115357;115358 70584;70585;70586;70587;70588;70589;70590;70591;70592;70593;70594;70595;70596 70591 5 FINGLKK Unmodified 818.50142 0.50142377 354 P0A7L3 rplT 50S ribosomal protein L20 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.868 13.288 2 0.030687 2777 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 72.618 38.765 108270000 0 0 0 8081300 8557800 8432600 0 0 0 11645000 11717000 12510000 0 0 0 5959400 0 2907100 0 0 0 11867000 12356000 14238000 6225 354 6071 115359;115360;115361;115362;115363;115364;115365;115366;115367;115368;115369 70597;70598;70599 70599 3 FINTMSQVPTISQLLPLPASDDDDLK Unmodified 2857.4419 0.44192614 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.215 53.734 3 0.14935 25410 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 19.448 12.573 364980000 9274400 0 0 5559300 0 0 31678000 28756000 26685000 0 4186600 1734700 42203000 48228000 37434000 0 0 0 47331000 42525000 39384000 0 0 0 6226 644 6072 115370;115371;115372;115373;115374;115375;115376;115377;115378;115379;115380;115381;115382 70600;70601 70601 2 FINTMSQVPTISQLLPLPASDDDDLKHK Unmodified 3122.5958 0.59580102 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 1 1 2 2 2 2 1 1 2 2 2 1 1 1 51.546 50.401 3;4 1.3423E-11 23715 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 131.32 131.07 1381300000 30455000 35392000 32007000 25616000 28586000 19790000 67081000 59293000 64331000 65629000 59391000 67923000 118590000 101590000 84287000 32024000 26667000 22930000 89958000 87805000 106740000 52619000 47509000 55131000 6227 644 6073 115383;115384;115385;115386;115387;115388;115389;115390;115391;115392;115393;115394;115395;115396;115397;115398;115399;115400;115401;115402;115403;115404;115405;115406;115407;115408;115409;115410;115411;115412;115413;115414;115415;115416;115417;115418;115419;115420 70602;70603;70604;70605;70606;70607;70608;70609;70610;70611;70612;70613;70614;70615;70616;70617;70618;70619;70620;70621;70622;70623 70621 22 FIPVDVYIPGCPPRPEAYMQALMLLQESIGK Unmodified 3531.7968 0.79682579 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.603 54.155 3 0.00022761 21893 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 64.176 62.51 244320000 0 7638600 8308400 0 4781600 0 14096000 0 0 19702000 22114000 18793000 17352000 16235000 0 0 0 0 23780000 23945000 22238000 14960000 17092000 13287000 6228 927 6074 115421;115422;115423;115424;115425;115426;115427;115428;115429;115430;115431;115432;115433;115434;115435 70624;70625;70626 70625 3 FIQDLSER Unmodified 1006.5084 0.50835964 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 22.747 21.971 2 0.085812 9477 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 58.782 47.013 43126000 0 0 0 0 0 0 13855000 12479000 0 812780 1442300 0 0 0 0 0 0 0 14536000 0 0 0 0 0 6229 1355 6075 115436;115437;115438;115439;115440 70627 70627 0 FIQQGHK Unmodified 856.45554 0.45553621 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 2 2 7.9739 8.8113 2 0.0074891 1997 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 91.093 91.093 682220000 43598000 26308000 30814000 0 0 0 116460000 100910000 103210000 0 0 0 30278000 32915000 20109000 0 0 0 57249000 55384000 64981000 0 0 0 6230 1545 6076 115441;115442;115443;115444;115445;115446;115447;115448;115449;115450;115451;115452;115453;115454;115455 70628;70629;70630;70631;70632;70633;70634;70635;70636;70637;70638 70635 11 FIQSTLHLDIPEDYQER Unmodified 2103.0273 0.027283968 1346 P30750 metN Methionine import ATP-binding protein MetN yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.004 38.39 3 3.5342E-05 19014 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 83.386 74.223 280740000 17757000 18238000 17493000 2285000 2396300 1972400 32712000 30927000 30601000 0 0 4668700 17401000 14597000 15622000 3483400 0 0 27219000 23580000 19789000 0 0 0 6231 1346 6077 115456;115457;115458;115459;115460;115461;115462;115463;115464;115465;115466;115467;115468;115469;115470;115471;115472 70639;70640;70641;70642;70643;70644;70645;70646 70640 8 FIQVPTTLLSQVDSSVGGK Unmodified 1975.0626 0.062606842 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.016 50.768 2;3 2.3618E-15 25154 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 157.2 147.01 798170000 80273000 75452000 75606000 0 0 0 64624000 73370000 69059000 0 0 0 57919000 55211000 45300000 0 0 0 66937000 67808000 66613000 0 0 0 6232 164 6078 115473;115474;115475;115476;115477;115478;115479;115480;115481;115482;115483;115484;115485;115486;115487;115488;115489;115490;115491;115492;115493;115494;115495;115496 70647;70648;70649;70650;70651;70652;70653;70654;70655;70656;70657;70658;70659;70660;70661;70662;70663 70647 17 FISIEAE Unmodified 807.40143 0.40143495 355 P0A7L8 rpmA 50S ribosomal protein L27 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 1 1 1 2 1 1 2 2 2 2 2 2 2 2 2 2 37.095 35.389 1;2 0.0018526 17032 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.72 140.72 1427300000 180690000 152440000 150790000 10771000 9091900 11656000 57253000 51145000 56148000 19176000 16646000 16924000 89101000 78679000 77129000 16110000 0 0 130580000 118600000 123880000 19564000 18342000 22544000 6233 355 6079 115497;115498;115499;115500;115501;115502;115503;115504;115505;115506;115507;115508;115509;115510;115511;115512;115513;115514;115515;115516;115517;115518;115519;115520;115521;115522;115523;115524;115525;115526;115527;115528;115529;115530;115531;115532;115533 70664;70665;70666;70667;70668;70669;70670;70671;70672;70673;70674;70675;70676;70677;70678;70679;70680;70681;70682 70675 12 FISNRPCASCEGTR Unmodified 1653.7352 0.73515824 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 12.387 12.962 2;3 3.132E-08 2982 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 140.1 140.1 562590000 31894000 37886000 41669000 0 1510900 0 26499000 30564000 29981000 10957000 7188900 8657100 23808000 22419000 27214000 55509000 53320000 67815000 21535000 24383000 22832000 6085100 6803500 4060000 6234 222 6080 115534;115535;115536;115537;115538;115539;115540;115541;115542;115543;115544;115545;115546;115547;115548;115549;115550;115551;115552;115553;115554;115555;115556;115557;115558;115559;115560;115561;115562;115563;115564;115565;115566;115567;115568;115569;115570;115571;115572;115573;115574 70683;70684;70685;70686;70687;70688;70689;70690;70691;70692;70693;70694;70695;70696;70697;70698;70699;70700;70701;70702;70703 70683 21 FITEVAWQAHFVK Unmodified 1574.8245 0.82454882 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 3 3 2 1 2 2 2 3 3 3 1 38.889 37.15 2;3 3.7238E-09 17881 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 172.98 169.09 1891900000 171350000 167220000 167620000 0 1579700 0 222970000 173930000 179140000 0 0 426610 124460000 121410000 115770000 0 0 0 159970000 154080000 130700000 1299600 0 0 6235 1195 6081 115575;115576;115577;115578;115579;115580;115581;115582;115583;115584;115585;115586;115587;115588;115589;115590;115591;115592;115593;115594;115595;115596;115597;115598;115599;115600;115601;115602;115603;115604;115605;115606;115607 70704;70705;70706;70707;70708;70709;70710;70711;70712;70713;70714;70715;70716;70717;70718;70719;70720;70721;70722;70723;70724;70725;70726;70727;70728;70729;70730;70731;70732;70733;70734;70735;70736;70737;70738;70739;70740;70741;70742;70743;70744;70745;70746 70730 40 FITFFQGCLMR Unmodified 1418.6839 0.68389794 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.465 50.149 2 1.4626E-14 23299 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 218.63 200.76 570560000 40387000 30952000 31815000 0 0 0 52996000 43629000 49231000 3848700 3428000 4002300 56952000 59436000 55000000 0 0 0 46886000 46174000 43718000 2102400 0 0 6236 540 6082 115608;115609;115610;115611;115612;115613;115614;115615;115616;115617;115618;115619;115620;115621;115622;115623 70747;70748;70749;70750;70751;70752;70753;70754 70754 8 FITIINNTLSDIR Unmodified 1518.8406 0.84059282 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 3 1 2 1 2 2 2 1 2 1 1 1 1 1 1 2 3 3 3 48.84 47.52 2;3 1.9523E-17 19012 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 254.57 163.92 16952000000 659990000 626510000 662050000 1260700000 1359600000 1639100000 785250000 804910000 735230000 229580000 196290000 155750000 573800000 463650000 474500000 50030000 47167000 49183000 920890000 893180000 838010000 1149400000 1197600000 1179600000 6237 133 6083 115624;115625;115626;115627;115628;115629;115630;115631;115632;115633;115634;115635;115636;115637;115638;115639;115640;115641;115642;115643;115644;115645;115646;115647;115648;115649;115650;115651;115652;115653;115654;115655;115656;115657;115658;115659;115660;115661;115662;115663;115664;115665 70755;70756;70757;70758;70759;70760;70761;70762;70763;70764;70765;70766;70767;70768;70769;70770;70771;70772;70773;70774;70775;70776;70777;70778;70779;70780;70781;70782;70783;70784;70785;70786;70787;70788;70789;70790;70791;70792;70793;70794;70795;70796;70797;70798;70799;70800;70801;70802;70803;70804;70805;70806;70807;70808;70809;70810;70811 70772 53 FITIINNTLSDIRR Unmodified 1674.9417 0.94170385 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 7 6 10 1 2 2 3 2 2 1 1 1 2 2 2 2 2 2 7 6 5 42.828 41.176 2;3 4.8858E-35 13899 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 310.53 295.84 18239000000 5590800 6360300 0 3119900000 2518000000 2931200000 10226000 14513000 12323000 287580000 249050000 260730000 2862300 2766700 2385100 119680000 97145000 155670000 13536000 14474000 14223000 2802200000 2871600000 2727400000 6238 133 6084 115666;115667;115668;115669;115670;115671;115672;115673;115674;115675;115676;115677;115678;115679;115680;115681;115682;115683;115684;115685;115686;115687;115688;115689;115690;115691;115692;115693;115694;115695;115696;115697;115698;115699;115700;115701;115702;115703;115704;115705;115706;115707;115708;115709;115710;115711;115712;115713;115714;115715;115716;115717;115718;115719;115720;115721;115722;115723;115724;115725;115726;115727;115728;115729;115730;115731;115732;115733;115734;115735 70812;70813;70814;70815;70816;70817;70818;70819;70820;70821;70822;70823;70824;70825;70826;70827;70828;70829;70830;70831;70832;70833;70834;70835;70836;70837;70838;70839;70840;70841;70842;70843;70844;70845;70846;70847;70848;70849;70850;70851;70852;70853;70854;70855;70856;70857;70858;70859;70860;70861;70862;70863;70864;70865;70866;70867;70868;70869;70870;70871;70872;70873;70874;70875 70847 60 FITLVADAR Unmodified 1004.5655 0.56548059 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.6 31.947 2 0.00019484 12302 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 127.02 77.663 117100000 0 0 0 1650400 1491800 1403300 9311500 10878000 9094300 7568900 6082700 6744800 6046400 6710600 6149100 0 0 500080 11191000 11965000 10554000 3977400 2989900 2791300 6239 188 6085 115736;115737;115738;115739;115740;115741;115742;115743;115744;115745;115746;115747;115748;115749;115750;115751;115752;115753;115754 70876;70877 70877 2 FITNAFTR Unmodified 968.50797 0.50796571 113 P05637 apaH Bis(5'-nucleosyl)-tetraphosphatase [symmetrical] yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 28.574 27.359 2 0.0050548 13086 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 87.251 77.264 98518000 8243600 8462300 10784000 0 0 0 9111200 6152900 0 0 0 0 6393200 8846600 6579600 0 0 0 12991000 12704000 8250600 0 0 0 6240 113 6086 115755;115756;115757;115758;115759;115760;115761;115762;115763;115764;115765 70878;70879 70878 1 FIVNHSAVEALR Unmodified 1354.7357 0.73573382 1354 P30871 ygiF Inorganic triphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 2 2 1 24.821 23.725 2;3 4.4373E-05 10444 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.018 89.534 163330000 39542000 36796000 34396000 0 501110 569540 17834000 16354000 14930000 0 0 0 0 0 0 0 0 0 2409100 0 0 0 0 0 6241 1354 6087 115766;115767;115768;115769;115770;115771;115772;115773;115774;115775;115776;115777;115778;115779;115780 70880;70881;70882;70883;70884 70880 4 FIVTNPNAK Unmodified 1002.5498 0.54983053 719 P0ACC3 erpA Iron-sulfur cluster insertion protein ErpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.915 19.29 2 0.00016022 7571 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130.04 120.45 2261200000 210490000 238630000 181620000 11281000 11183000 10434000 181950000 202370000 173440000 16547000 15733000 15322000 134520000 134490000 134630000 0 0 0 192100000 189310000 171800000 11684000 12298000 11377000 6242 719 6088 115781;115782;115783;115784;115785;115786;115787;115788;115789;115790;115791;115792;115793;115794;115795;115796;115797;115798;115799;115800;115801 70885;70886;70887;70888;70889;70890;70891;70892;70893;70894;70895;70896;70897;70898;70899;70900;70901;70902;70903;70904;70905;70906 70888 22 FIWVQQPGS Unmodified 1060.5342 0.53418046 476 P0A901 blc Outer membrane lipoprotein Blc yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 45.749 43.846 2 0.027383 21647 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 60.788 50.078 55249000 0 5112000 3901000 0 0 0 11761000 11053000 10101000 3129700 3701100 4691900 0 0 0 0 0 0 0 0 0 1797800 0 0 6243 476 6089 115802;115803;115804;115805;115806;115807;115808;115809;115810 70907;70908 70908 2 FKAWQPGGAGTDFLTEAHLDLPMEFESIGK Unmodified 3291.591 0.59105 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 53.435 52.31 4 1.195E-06 18977 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 85.814 83.611 87168000 0 0 0 8738700 5304400 10352000 0 0 0 8288300 7347200 7838500 0 0 0 0 6111400 7289600 0 0 0 7996800 6926400 10974000 6244 1383 6090 115811;115812;115813;115814;115815;115816;115817;115818;115819;115820;115821 70909;70910;70911;70912;70913 70912 5 FKDDVNEVR Unmodified 1120.5513 0.55128709 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 3 2 1 3 3 3 2 2 2 2 3 3 1 2 3 3 3 3 2 2 2 12.606 13.229 2;3 0.00014348 3631 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 140.5 94.486 1559000000 97835000 140160000 194380000 10085000 3715900 0 105080000 96650000 87298000 54449000 47140000 39827000 60378000 96029000 113890000 19936000 35068000 35952000 103510000 85561000 93215000 11799000 12985000 14039000 6245 297 6091 115822;115823;115824;115825;115826;115827;115828;115829;115830;115831;115832;115833;115834;115835;115836;115837;115838;115839;115840;115841;115842;115843;115844;115845;115846;115847;115848;115849;115850;115851;115852;115853;115854;115855;115856;115857;115858;115859;115860;115861;115862;115863;115864;115865;115866;115867;115868;115869;115870;115871;115872;115873;115874;115875 70914;70915;70916;70917;70918;70919;70920;70921;70922;70923;70924;70925;70926 70926 11 FKDEGPILFIHTGGAPALFAYHPHV Unmodified 2733.4067 0.40674211 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.18 43.76 5 0.0030015 21384 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.876 51.09 206600000 32449000 43653000 36086000 0 0 0 16069000 14560000 17780000 0 0 0 4296300 6939300 6699100 0 0 0 12559000 10346000 5166500 0 0 0 6246 1850 6092 115876;115877;115878;115879;115880;115881;115882;115883;115884;115885;115886;115887 70927;70928;70929;70930 70928 4 FKDHDFAAIADFDMVR Unmodified 1896.8829 0.88286834 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 1 3 3 3 3 3 3 40.696 38.996 2;3;4 8.2621E-39 18953 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 250.78 243.58 4955900000 124330000 120870000 110610000 1098100 1157300 0 952480000 862260000 858010000 2719700 0 0 122180000 116340000 110230000 0 0 0 568750000 534900000 469990000 0 0 0 6247 669 6093 115888;115889;115890;115891;115892;115893;115894;115895;115896;115897;115898;115899;115900;115901;115902;115903;115904;115905;115906;115907;115908;115909;115910;115911;115912;115913;115914;115915;115916;115917;115918;115919;115920;115921;115922;115923;115924;115925;115926 70931;70932;70933;70934;70935;70936;70937;70938;70939;70940;70941;70942;70943;70944;70945;70946;70947;70948;70949;70950;70951;70952;70953;70954;70955;70956;70957;70958 70944 28 FKDLGLLIVDEEHR Unmodified 1682.8992 0.89917033 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 34.473 33.763 3;4 0.0077682 11208 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 41.378 38.991 24307000 0 0 0 0 0 0 0 0 0 0 0 0 3809700 2273200 1993500 5002900 3982900 4760100 2484900 0 0 0 0 0 6248 1355 6094 115927;115928;115929;115930;115931;115932;115933;115934 70959;70960;70961;70962 70961 3 FKDPDASQPEIMLYVAGK Unmodified 2007.9976 0.99756374 575 P0AA47 plaP Low-affinity putrescine importer PlaP yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 40.024 38.437 3 0.00010733 18728 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 68.129 63.127 60894000 0 0 0 0 0 0 0 0 0 0 0 0 5775700 5773900 3176100 0 0 0 13885000 15157000 14512000 0 0 2613800 6249 575 6095 115935;115936;115937;115938;115939;115940;115941 70963 70963 1 FKEAHPEIPTK Unmodified 1295.6874 0.68738664 1628 P60716 lipA Lipoyl synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 2 2 2 2 2 1 1 1 2 2 3 1 3 2 3 2 3 3 13.014 13.734 2;3 0.00018167 2917 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 115.57 105.79 492540000 19573000 6438100 28484000 41072000 41817000 25370000 22184000 18077000 28198000 4563400 2493700 4113000 27012000 18395000 24347000 0 0 3000700 37635000 29157000 34122000 15558000 35706000 25225000 6250 1628 6096 115942;115943;115944;115945;115946;115947;115948;115949;115950;115951;115952;115953;115954;115955;115956;115957;115958;115959;115960;115961;115962;115963;115964;115965;115966;115967;115968;115969;115970;115971;115972;115973;115974;115975;115976;115977;115978;115979;115980;115981;115982;115983;115984;115985;115986 70964;70965;70966;70967;70968;70969;70970;70971;70972;70973;70974;70975;70976;70977 70974 14 FKEFWIER Unmodified 1153.592 0.59202969 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 31.761 30.37 3 0.0012297 14348 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.867 88.888 201140000 19206000 22868000 20080000 0 0 0 18236000 20530000 16127000 0 0 0 10164000 8426400 8330600 0 0 0 19621000 16425000 19351000 1778100 0 0 6251 1408 6097 115987;115988;115989;115990;115991;115992;115993;115994;115995;115996;115997;115998;115999 70978;70979;70980;70981;70982;70983;70984;70985;70986;70987;70988;70989 70981 12 FKESSVR Unmodified 851.45012 0.45011648 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.504 11.142 2 0.003396 2117 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 120.65 75.953 194130000 11959000 10819000 8575600 0 375230 0 12015000 10736000 13683000 0 15429000 16072000 15156000 0 17031000 6349400 4633100 0 15304000 17775000 18215000 0 0 0 6252 882 6098 116000;116001;116002;116003;116004;116005;116006;116007;116008;116009;116010;116011;116012;116013;116014;116015;116016 70990;70991;70992 70992 3 FKESVEAILGETLDLPK Unmodified 1888.0193 0.019345044 52 P00934 thrC Threonine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 50.029 48.628 2;3 3.1451E-05 23695 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 63.691 61.693 444920000 52892000 53834000 54733000 1827600 1238300 1544500 21452000 21043000 19585000 0 0 0 31811000 21049000 25607000 0 0 0 46145000 50617000 41543000 0 0 0 6253 52 6099 116017;116018;116019;116020;116021;116022;116023;116024;116025;116026;116027;116028;116029;116030;116031;116032;116033;116034;116035;116036;116037;116038;116039;116040;116041;116042;116043 70993;70994;70995;70996;70997;70998;70999;71000;71001;71002;71003;71004;71005;71006;71007 70996 14 FKETDLVTIGNDAWATGNPVFK Unmodified 2422.2169 0.21687565 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.421 48.216 3 8.6857E-07 19096 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 100.76 99.06 416070000 10307000 6784500 10345000 8524400 7535800 7502100 21262000 0 14923000 37465000 31265000 35881000 18859000 17017000 16204000 11902000 6537200 8423700 25161000 27133000 24989000 23378000 23310000 21358000 6254 844 6100 116044;116045;116046;116047;116048;116049;116050;116051;116052;116053;116054;116055;116056;116057;116058;116059;116060;116061;116062;116063;116064;116065;116066 71008;71009;71010;71011;71012;71013;71014;71015;71016;71017;71018;71019;71020;71021;71022;71023;71024 71015 17 FKEVAEAWEVLSDEQR Unmodified 1934.9374 0.93740633 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 1 1 1 2 1 1 41.357 39.641 2;3 1.3467E-30 19775 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 238.43 229.47 308150000 29656000 20583000 23519000 1549800 1417900 0 67471000 63469000 62448000 4476500 5404500 0 6623200 8046100 9581600 834930 0 0 0 3068600 0 0 0 0 6255 1440 6101 116067;116068;116069;116070;116071;116072;116073;116074;116075;116076;116077;116078;116079;116080;116081;116082;116083;116084;116085;116086;116087;116088 71025;71026;71027;71028;71029;71030;71031;71032;71033;71034;71035;71036 71026 12 FKEYVHDIPVYLIVHDNPGLLGSGAHLR Unmodified 3158.6665 0.66653862 285 P0A6V8 glk Glucokinase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 2 1 1 2 2 2 2 2 42.902 41.204 5;6 7.7969E-08 19110 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 105.02 105.02 648420000 31214000 23344000 24803000 922170 0 0 113350000 88920000 79793000 3481900 0 0 33027000 38563000 50357000 0 0 0 60105000 55888000 44651000 0 0 0 6256 285 6102 116089;116090;116091;116092;116093;116094;116095;116096;116097;116098;116099;116100;116101;116102;116103;116104;116105;116106;116107;116108;116109;116110;116111 71037;71038;71039;71040;71041;71042;71043;71044;71045;71046 71046 10 FKEYWTEYFQIMK Unmodified 1811.8593 0.85927935 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 49.17 47.799 3 2.0671E-05 23276 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 97.86 93.689 160960000 0 0 0 1040300 833900 809260 15679000 20184000 19124000 0 0 0 15088000 10927000 13995000 0 0 0 19018000 23202000 20006000 0 0 1049600 6257 1872 6103 116112;116113;116114;116115;116116;116117;116118;116119;116120;116121;116122;116123;116124 71047;71048;71049;71050;71051;71052;71053 71050 7 FKGDDGK Unmodified 765.36572 0.36571815 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 1 1 1 5.3298 6.1609 2 0.0019289 1354 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.11 89.347 1140900000 112900000 138160000 118210000 0 0 0 96855000 99427000 95709000 0 0 0 84557000 64053000 81018000 0 0 0 83165000 84312000 82494000 0 0 0 6258 1545 6104 116125;116126;116127;116128;116129;116130;116131;116132;116133;116134;116135;116136;116137;116138 71054;71055;71056;71057;71058;71059;71060;71061;71062 71061 9 FKGDDGKAEK Unmodified 1093.5404 0.54038805 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 4.6775 5.5954 2 0.015922 981 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 70.552 48.421 48141000 0 0 0 227520 0 280770 10751000 10603000 9610400 0 0 0 0 0 5420500 0 0 0 0 5046500 6200900 0 0 0 6259 1545 6105 116139;116140;116141;116142;116143;116144;116145;116146 71063;71064;71065 71064 3 FKGDDIVDTVTLTR Unmodified 1578.8253 0.82533668 266 P0A6N8 yeiP Elongation factor P-like protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 34.501 33.044 2;3 4.0646E-08 15970 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 134.88 123.62 3108900000 184020000 189920000 151100000 0 1649500 0 271830000 267400000 269410000 0 0 0 273380000 259030000 265480000 0 0 0 320420000 326790000 328450000 0 0 0 6260 266 6106 116147;116148;116149;116150;116151;116152;116153;116154;116155;116156;116157;116158;116159;116160;116161;116162;116163;116164;116165;116166;116167;116168;116169;116170;116171 71066;71067;71068;71069;71070;71071;71072;71073;71074;71075;71076;71077;71078;71079;71080;71081;71082;71083;71084 71069 18 FKGNASVLPADNTLATVTFK Unmodified 2093.1157 0.11570504 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.958 36.327 3 0.08373 13064 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 38.205 33.766 220190000 0 0 0 0 0 672330 17377000 16246000 12531000 26393000 26974000 26287000 7974900 9455800 8781600 6895700 4982200 5107000 10982000 10162000 10569000 6562100 6550600 5685200 6261 1836 6107 116172;116173;116174;116175;116176;116177;116178;116179;116180;116181;116182;116183;116184;116185;116186;116187;116188;116189;116190 71085 71085 0 FKGVALVDGK Unmodified 1032.5968 0.59678072 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 19.289 19.408 2 0.0010077 5811 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 93.598 73.961 77038000 0 0 0 2013700 1472500 1737200 0 0 0 9649900 10139000 11722000 0 0 0 8223700 0 0 0 0 0 11694000 9064400 11323000 6262 272 6108 116191;116192;116193;116194;116195;116196;116197;116198;116199;116200 71086;71087;71088;71089;71090 71090 5 FKHPETSTLVR Unmodified 1313.7092 0.70918471 88 P04335 frsA Esterase FrsA yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 2 2 1 1 1 1 1 12.774 13.559 2;3 0.0012829 3947 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.67 64.206 160860000 32296000 32319000 10065000 0 0 0 23647000 23650000 16526000 0 0 0 0 2781400 3933800 0 0 0 0 12368000 3273000 0 0 0 6263 88 6109 116201;116202;116203;116204;116205;116206;116207;116208;116209;116210;116211;116212;116213;116214 71091;71092;71093;71094;71095 71091 3 FKLNLGTR Unmodified 947.55525 0.55525025 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 22.064 21.673 2 0.015891 6480 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 80.438 77.194 22575000 0 0 0 2646200 3795200 3262900 0 0 0 1756500 2786200 3280100 0 0 0 0 0 0 0 0 0 1376400 1647900 2023800 6264 570 6110 116215;116216;116217;116218;116219;116220;116221;116222;116223 71096;71097;71098 71097 3 FKLPTDR Unmodified 875.4865 0.48650199 1502 P37903 uspF Universal stress protein F yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.852 18.419 2 0.010691 6653 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.51 61.405 567230000 46983000 48209000 33573000 7018400 6229100 5489700 88711000 100330000 88038000 0 2858600 0 27129000 23487000 20564000 0 0 0 20704000 18459000 16827000 4672800 3297400 4652200 6265 1502 6111 116224;116225;116226;116227;116228;116229;116230;116231;116232;116233;116234;116235;116236;116237;116238;116239;116240;116241;116242 71099;71100;71101;71102;71103;71104;71105;71106;71107 71104 9 FKMPIITFIDTPGAYPGVGAEER Unmodified 2508.2723 0.27228204 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.369 51.25 3 2.7728E-05 20415 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 87.102 80.114 139070000 0 0 0 6552500 7307600 6443800 0 0 0 9124100 7608900 11726000 0 0 0 6520900 0 8152000 0 2457900 0 22514000 26630000 24034000 6266 651 6112 116243;116244;116245;116246;116247;116248;116249;116250;116251;116252;116253;116254 71108;71109;71110;71111;71112;71113;71114;71115;71116 71113 9 FKQEYSQAASVLVGDIK Unmodified 1881.9836 0.98362824 1898 P77335 hlyE Hemolysin E, chromosomal yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 36.208 34.114 3 0.14134 13748 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 22.646 21.657 20089000 0 2585600 0 730710 0 0 0 0 6328000 3955300 3194600 3294300 0 0 0 0 0 0 0 0 0 0 0 0 6267 1898 6113 116255;116256;116257;116258;116259;116260 71117 71117 1 FKRPVVPGDQMIMEVTFEK Unmodified 2250.1541 0.15408116 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 1 1 2 2 2 38.686 36.917 3;4 7.3943E-05 14398 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 74.732 72.258 243570000 0 0 0 2549200 0 2151900 0 0 3484600 25960000 30572000 33412000 3169800 0 3495600 7741600 12481000 12751000 5693900 7729700 5893300 29619000 29220000 27649000 6268 272 6114 116261;116262;116263;116264;116265;116266;116267;116268;116269;116270;116271;116272;116273;116274;116275;116276;116277;116278;116279;116280;116281;116282;116283 71118;71119;71120;71121;71122;71123;71124;71125;71126;71127 71125 10 FLAAWPEIADNYSER Unmodified 1780.842 0.84204938 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 49.457 48.059 2;3 1.4092E-11 23869 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.58 161.27 675430000 41483000 40738000 35015000 0 0 0 132340000 137520000 115520000 10073000 12617000 13571000 20623000 20012000 17756000 0 0 0 27475000 31953000 18740000 0 0 0 6269 522 6115 116284;116285;116286;116287;116288;116289;116290;116291;116292;116293;116294;116295;116296;116297;116298;116299;116300;116301;116302;116303;116304;116305;116306;116307;116308;116309 71128;71129;71130;71131;71132;71133;71134;71135;71136;71137;71138 71133 11 FLADHSR Unmodified 844.41915 0.4191507 1159 P19636 eutC Ethanolamine ammonia-lyase light chain yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 11.241 12.022 2 0.14093 3087 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 57.463 22.263 18982000 0 0 3073400 0 0 0 0 3615600 0 0 0 947150 0 3008200 4100400 0 0 0 0 4237500 0 0 0 0 6270 1159 6116 116310;116311;116312;116313;116314;116315 71139 71139 0 FLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLK Unmodified 3856.8942 0.89416789 532 P0A9K9 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 3 4 3 4 4 3 4 4 4 3 4 3 2 3 2 3 4 3 3 4 2 47.78 46.394 3;4;5 1.4421E-72 22349 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 264.19 262.95 15239000000 819050000 867540000 806290000 128710000 136200000 123210000 1151700000 1085400000 1175600000 396610000 330870000 435490000 987920000 1073100000 872220000 117420000 98864000 79988000 1231300000 1339000000 1359400000 191730000 262360000 169400000 6271 532 6117 116316;116317;116318;116319;116320;116321;116322;116323;116324;116325;116326;116327;116328;116329;116330;116331;116332;116333;116334;116335;116336;116337;116338;116339;116340;116341;116342;116343;116344;116345;116346;116347;116348;116349;116350;116351;116352;116353;116354;116355;116356;116357;116358;116359;116360;116361;116362;116363;116364;116365;116366;116367;116368;116369;116370;116371;116372;116373;116374;116375;116376;116377;116378;116379;116380;116381;116382;116383;116384;116385;116386;116387;116388;116389;116390;116391;116392;116393;116394 71140;71141;71142;71143;71144;71145;71146;71147;71148;71149;71150;71151;71152;71153;71154;71155;71156;71157;71158;71159;71160;71161;71162;71163;71164;71165;71166;71167;71168;71169;71170;71171;71172;71173;71174;71175;71176;71177;71178;71179;71180;71181;71182;71183;71184;71185;71186;71187;71188;71189;71190;71191;71192;71193;71194;71195;71196;71197;71198;71199;71200;71201;71202;71203;71204;71205;71206;71207;71208;71209;71210;71211;71212;71213 71184 74 FLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLK Oxidation (M) 3872.8891 0.88908251 532 P0A9K9 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 2 2 2 2 1 2 2 2 2 2 2 2 1 1 1 44.663 43.018 4 1.0932E-22 20872 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.68 146.45 407360000 8189100 12845000 16856000 1448800 7643000 7432100 43625000 40145000 32225000 9413100 0 15270000 34744000 25638000 23915000 0 0 0 37175000 42796000 34015000 4764200 6213200 3006800 6272 532 6117 116395;116396;116397;116398;116399;116400;116401;116402;116403;116404;116405;116406;116407;116408;116409;116410;116411;116412;116413;116414;116415;116416;116417;116418;116419;116420;116421;116422;116423;116424;116425;116426 71214;71215;71216;71217;71218;71219;71220;71221;71222;71223;71224;71225;71226;71227;71228 71222 320 15 FLAFGETHLADVLVSK Unmodified 1745.9352 0.93522148 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 47.388 45.931 2;3 3.2785E-25 22749 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 225.23 204.08 3867000000 421150000 403120000 348340000 1526700 1839900 1416800 356410000 352620000 312400000 1867600 2143100 1563900 224710000 217010000 263100000 0 0 0 330440000 323310000 304050000 0 0 0 6273 94 6118 116427;116428;116429;116430;116431;116432;116433;116434;116435;116436;116437;116438;116439;116440;116441;116442;116443;116444;116445;116446;116447;116448;116449;116450;116451;116452;116453;116454;116455;116456;116457 71229;71230;71231;71232;71233;71234;71235;71236;71237;71238;71239;71240;71241;71242;71243;71244;71245;71246;71247;71248;71249;71250;71251;71252;71253;71254;71255;71256;71257;71258;71259;71260 71232 32 FLAGHAEELDLR Unmodified 1369.699 0.69901396 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 2 2 2 2 2 2 2 3 2 27.194 26.034 2;3 3.0957E-06 12135 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 171.87 134.81 9083600000 1005500000 946840000 799330000 1233000 2431400 2957900 967050000 879720000 891550000 0 0 0 522790000 505780000 459170000 0 0 0 729560000 718070000 651700000 0 0 0 6274 1109 6119 116458;116459;116460;116461;116462;116463;116464;116465;116466;116467;116468;116469;116470;116471;116472;116473;116474;116475;116476;116477;116478;116479;116480;116481;116482;116483;116484;116485;116486 71261;71262;71263;71264;71265;71266;71267;71268;71269;71270;71271;71272;71273;71274;71275;71276;71277;71278;71279;71280;71281;71282;71283;71284;71285;71286;71287 71265 25 FLALQTMGTETAR Unmodified 1437.7286 0.72859953 1082 P13001 bioH Pimeloyl-[acyl-carrier protein] methyl ester esterase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 35.79 34.215 2 2.7158E-08 16484 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 157.24 153.48 144190000 0 10518000 11660000 0 0 0 16195000 14064000 13365000 0 0 0 11041000 11776000 9048400 0 0 0 16632000 14949000 14939000 0 0 0 6275 1082 6120 116487;116488;116489;116490;116491;116492;116493;116494;116495;116496;116497 71288;71289;71290;71291;71292 71290 5 FLANGSEWLELEGAK Unmodified 1662.8253 0.82533668 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 46.967 45.527 2 7.2665E-06 22241 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.39 74.225 131550000 0 0 0 0 0 0 17110000 17590000 16074000 0 0 0 17909000 14003000 17151000 0 0 0 11506000 10578000 9627300 0 0 0 6276 1467 6121 116498;116499;116500;116501;116502;116503;116504;116505;116506 71293;71294 71293 2 FLASGLK Unmodified 734.43268 0.4326755 207 P09158 speE Polyamine aminopropyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 19.988 20.449 1;2 0.0045644 7933 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 103.29 64.068 1594500000 330550000 301660000 280720000 429350 426790 0 41706000 54860000 53150000 0 0 0 76718000 63948000 61353000 0 0 0 107470000 98624000 122930000 0 0 0 6277 207 6122 116507;116508;116509;116510;116511;116512;116513;116514;116515;116516;116517;116518;116519;116520;116521;116522;116523;116524;116525;116526;116527;116528;116529;116530;116531 71295;71296;71297;71298;71299;71300;71301;71302;71303;71304;71305;71306 71300 11 FLAVGDDFR Unmodified 1038.5134 0.51344502 983 P0AG40 ribF Riboflavin biosynthesis protein RibF;Riboflavin kinase;FMN adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.17 33.959 2 0.00028218 16343 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.41 104.62 226070000 26254000 25070000 23562000 0 451410 0 0 18791000 18545000 0 0 0 14333000 15708000 14318000 1918300 1151800 1244500 20170000 22687000 21861000 0 0 0 6278 983 6123 116532;116533;116534;116535;116536;116537;116538;116539;116540;116541;116542;116543;116544;116545;116546;116547 71307;71308;71309;71310;71311;71312;71313;71314;71315;71316;71317;71318 71310 6 FLAVPAEALVYTMK Unmodified 1551.8371 0.83708734 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.723 51.405 3 5.5954E-07 25265 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 129.71 127.51 235430000 20646000 24924000 23034000 1809700 0 2056500 13528000 13695000 15475000 3481100 5126600 2579400 12106000 11814000 15087000 0 0 0 24588000 22988000 22492000 0 0 0 6279 62 6124 116548;116549;116550;116551;116552;116553;116554;116555;116556;116557;116558;116559;116560;116561;116562;116563;116564 71319;71320;71321;71322;71323;71324;71325;71326;71327;71328;71329;71330;71331 71326 13 FLAYEALLEK Unmodified 1195.6489 0.64887587 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.11 43.457 2 0.0015294 21085 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.213 76.03 651550000 136160000 131930000 113480000 3066200 3182500 2578100 54678000 55565000 50686000 4039100 0 3232500 11655000 10590000 12654000 0 0 0 18463000 18902000 17106000 1611600 1084500 891190 6280 1376 6125 116565;116566;116567;116568;116569;116570;116571;116572;116573;116574;116575;116576;116577;116578;116579;116580;116581;116582;116583;116584 71332;71333;71334;71335;71336;71337;71338;71339;71340;71341 71340 7 FLDADIQNNPQK Unmodified 1401.6888 0.6888432 1110 P15373 prlF Antitoxin PrlF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 24.665 23.629 2 6.6439E-12 10505 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 192.92 188.58 99179000 13511000 12941000 11343000 0 0 0 11512000 12504000 10612000 0 0 0 0 0 3854400 0 0 0 6672500 7734700 8494000 0 0 0 6281 1110 6126 116585;116586;116587;116588;116589;116590;116591;116592;116593;116594 71342;71343;71344;71345 71343 4 FLDEDEMQR Unmodified 1181.5023 0.50228798 611 P0AAT4 ybdG Miniconductance mechanosensitive channel YbdG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 24.251 23.421 2 0.0018627 9777 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 87.181 83.247 33584000 1271800 0 0 1620600 1645100 1274300 0 0 0 0 0 0 5872200 5464600 6185000 0 0 0 3061400 3985300 3203700 0 0 0 6282 611 6127 116595;116596;116597;116598;116599;116600;116601;116602;116603;116604 71346;71347 71347 2 FLDESLPLENGSYQDVVAFK Unmodified 2270.1107 0.11067925 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 52.88 51.483 2 4.7479E-18 25110 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 169.04 158.71 122340000 29794000 31847000 23599000 0 0 0 0 8462000 10786000 0 0 0 0 6130400 0 0 0 0 11723000 0 0 0 0 0 6283 1465 6128 116605;116606;116607;116608;116609;116610;116611 71348;71349;71350 71350 3 FLDFLAK Unmodified 852.47454 0.47454032 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.734 43.219 2 0.0010668 20166 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 137.44 123.38 1580600000 14223000 14825000 15678000 0 0 0 142500000 123210000 117390000 0 0 0 148150000 134330000 140180000 0 0 0 242520000 262490000 225060000 0 0 0 6284 993 6129 116612;116613;116614;116615;116616;116617;116618;116619;116620;116621;116622;116623 71351;71352;71353;71354;71355;71356;71357;71358;71359;71360;71361;71362;71363 71362 13 FLDFLAKPENAAEWHQK Unmodified 2043.0214 0.021410729 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 1 2 1 3 3 3 1 1 1 3 3 3 2 2 2 38.143 36.458 2;3;4 7.2647E-24 16969 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 206.46 198.49 27028000000 317820000 257940000 252970000 9263900 8961700 8250800 1893800000 1895900000 1903800000 2458200 3886000 2650100 2571200000 2349500000 2332500000 4959700 4535600 5628800 4422100000 4249500000 4511600000 6471000 6863200 5655100 6285 993 6130 116624;116625;116626;116627;116628;116629;116630;116631;116632;116633;116634;116635;116636;116637;116638;116639;116640;116641;116642;116643;116644;116645;116646;116647;116648;116649;116650;116651;116652;116653;116654;116655;116656;116657;116658;116659;116660;116661;116662;116663;116664;116665;116666;116667;116668;116669;116670;116671;116672;116673;116674;116675;116676;116677;116678 71364;71365;71366;71367;71368;71369;71370;71371;71372;71373;71374;71375;71376;71377;71378;71379;71380;71381;71382;71383;71384;71385;71386;71387;71388;71389;71390;71391;71392;71393;71394;71395;71396;71397;71398;71399;71400;71401;71402;71403;71404;71405;71406;71407;71408;71409;71410;71411;71412;71413 71405 50 FLDQVAAK Unmodified 890.48617 0.48616764 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.643 21.063 2 0.0012251 8499 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 110.63 86.001 4312100000 280850000 0 227590000 0 2074500 0 419930000 431460000 422760000 0 0 0 392290000 321220000 320200000 0 0 0 522550000 496840000 474360000 0 0 0 6286 448 6131 116679;116680;116681;116682;116683;116684;116685;116686;116687;116688;116689;116690 71414;71415;71416;71417;71418;71419;71420;71421;71422;71423;71424 71416 11 FLDVAMR Unmodified 850.43711 0.43710895 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.733 29.172 2 1.2665E-05 14095 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.42 166.4 792990000 76047000 79075000 77561000 1835500 1395600 1357600 149880000 154590000 141870000 4145400 3471600 3633400 16666000 15798000 18114000 0 0 0 18146000 15127000 14272000 0 0 0 6287 1191 6132 116691;116692;116693;116694;116695;116696;116697;116698;116699;116700;116701;116702;116703;116704;116705;116706;116707;116708 71425;71426;71427;71428;71429;71430;71431;71432;71433 71428 9 FLDVFIEK Unmodified 1009.5484 0.54843354 1753 P69853 dmsD Tat proofreading chaperone DmsD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 44.29 42.711 2 0.0017368 19834 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 106.36 90.858 221240000 17972000 14572000 13388000 0 0 0 20531000 23238000 20677000 0 939540 0 15928000 14249000 15017000 0 0 0 23502000 22225000 18999000 0 0 0 6288 1753 6133 116709;116710;116711;116712;116713;116714;116715;116716;116717;116718;116719;116720;116721 71434;71435;71436;71437;71438;71439;71440;71441 71441 8 FLDYCDPANVPR Unmodified 1465.666 0.66599927 742 P0ACR4 yeiE Uncharacterized HTH-type transcriptional regulator YeiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 34.688 33.137 2 0.00023347 16008 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 87.806 87.034 86623000 0 0 0 0 0 0 14085000 15141000 14055000 0 0 0 7643900 0 6877300 0 0 0 10193000 8736400 9891600 0 0 0 6289 742 6134 116722;116723;116724;116725;116726;116727;116728;116729 71442;71443;71444 71444 2 FLECSESELNR Unmodified 1382.6136 0.61362935 117 P05719 hsdS Type-1 restriction enzyme EcoKI specificity protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 23.677 22.929 2 0.073641 9644 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 44.318 44.318 27498000 0 0 0 0 0 0 0 0 0 0 0 0 4443200 4208200 4386200 0 0 0 0 6019200 8441000 0 0 0 6290 117 6135 116730;116731;116732;116733;116734 71445 71445 0 FLEEGDK Unmodified 836.3916 0.39159855 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.273 14.957 2 0.062465 4927 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.76 45.539 758030000 137370000 119770000 124620000 0 0 0 32831000 38480000 34979000 3048200 1832900 2944400 40401000 44264000 43393000 0 0 0 46879000 45169000 42045000 0 0 0 6291 298 6136 116735;116736;116737;116738;116739;116740;116741;116742;116743;116744;116745;116746;116747;116748;116749 71446;71447 71446 2 FLEEGDKAK Unmodified 1035.5237 0.52367535 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 1 By MS/MS 1 12.385 12.397 2 0.15151 2764 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 59.245 50.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6292 298 6137 116750 71448 71448 1 FLEGAAR Unmodified 762.40244 0.40243801 1723 P68699 atpE ATP synthase subunit c yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.078 15.595 2 0.001213 4377 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 133.99 39.319 4247900000 0 0 0 21259000 17291000 19187000 394740000 413560000 403800000 106830000 102720000 107940000 290490000 246690000 268560000 63943000 51012000 57132000 483000000 541990000 438730000 634070 114730000 103670000 6293 1723 6138 116751;116752;116753;116754;116755;116756;116757;116758;116759;116760;116761;116762;116763;116764;116765;116766;116767;116768;116769;116770;116771 71449;71450;71451;71452;71453;71454;71455;71456;71457;71458;71459;71460;71461;71462;71463 71449 15 FLEMLLK Unmodified 892.50921 0.50921126 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.638 44.198 2 0.0078297 21372 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.673 88.232 103680000 11789000 10016000 8869300 0 0 0 6595000 8671700 8012000 0 0 0 8507000 8699000 7734400 0 0 0 7372900 8493200 8921100 0 0 0 6294 389 6139 116772;116773;116774;116775;116776;116777;116778;116779;116780;116781;116782;116783 71464;71465;71466;71467;71468;71469;71470;71471;71472;71473;71474;71475 71472 12 FLEQQNK Unmodified 905.46068 0.46068117 14;8 CON__P48668;CON__P02538;CON__P04259;CON__Q8VED5;CON__P05787;CON__Q3KNV1;CON__P08729;CON__Q9NSB2;CON__Q6ISB0;CON__Q61726;CON__O43790;CON__Q6NT21;CON__P78385;CON__Q14533;CON__P78386;CON__P13647 no no 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 12.627 13.101 2 0.007515 3054 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 90.986 51.767 99787000 0 0 0 0 4605400 3043100 0 0 0 17068000 15445000 17953000 0 0 0 0 0 0 0 0 0 13215000 13923000 14535000 + 6295 8;14 6140 116784;116785;116786;116787;116788;116789;116790;116791 71476;71477;71478;71479;71480 71478 5 FLEQQNQVLETK Unmodified 1475.762 0.76200815 21 CON__Q7RTS7;CON__Q32MB2 no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 3 3 3 3 27.087 25.477 2 5.2476E-05 9052 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 107.15 81.216 85231000 0 0 0 1495200 731490 982800 0 0 0 16188000 17606000 15426000 0 0 0 0 0 0 0 0 0 12012000 10480000 10309000 + 6296 21 6141 116792;116793;116794;116795;116796;116797;116798;116799;116800;116801;116802;116803;116804;116805;116806;116807;116808;116809;116810;116811;116812 71481;71482;71483;71484;71485;71486;71487;71488;71489 71488 8 FLEQQNQVLQTK Unmodified 1474.778 0.77799256 11;17;3 CON__P04264;CON__P35908;CON__Q6NXH9;CON__Q7Z794;CON__ENSEMBL:ENSBTAP00000038253 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 1 1 1 1 25.438 24.3 2;3 1.0968E-23 8372 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 242.97 218.88 2682600000 0 0 0 56024000 59524000 57398000 0 0 0 619450000 547860000 385460000 0 0 0 59199000 42894000 46509000 0 0 0 263740000 254660000 289880000 + 6297 11;17;3 6142 116813;116814;116815;116816;116817;116818;116819;116820;116821;116822;116823;116824;116825;116826 71490;71491;71492;71493;71494;71495;71496;71497;71498;71499;71500;71501;71502;71503;71504;71505;71506;71507 71504 18 FLETDIPVFGICLGHQLLALASGAK Unmodified 2669.4251 0.42509429 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.776 54.378 3 2.0841E-16 26949 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.28 151.07 1310000000 309710000 277350000 353230000 4748300 4752400 4892600 0 0 0 0 0 0 26392000 19813000 21758000 0 0 0 91207000 95344000 100830000 0 0 0 6298 238 6143 116827;116828;116829;116830;116831;116832;116833;116834;116835;116836;116837;116838 71508;71509;71510;71511;71512;71513 71512 6 FLFDEYVR Unmodified 1087.5338 0.53384611 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 45.442 43.975 2 0.00025974 21346 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 149.4 141.73 2867400000 156930000 147560000 161580000 2124500 2966000 2385600 332940000 308440000 285790000 35632000 38413000 34078000 181240000 169170000 159650000 1915500 1787300 2094800 313430000 274420000 244330000 3783800 3536200 3242300 6299 1716 6144 116839;116840;116841;116842;116843;116844;116845;116846;116847;116848;116849;116850;116851;116852;116853;116854;116855;116856;116857;116858;116859;116860;116861;116862;116863;116864;116865;116866;116867 71514;71515;71516;71517;71518;71519;71520;71521;71522;71523;71524 71516 11 FLFNNGYADQITSVLK Unmodified 1828.9359 0.93594977 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 1 1 1 2 3 3 2 2 2 52.872 51.574 2;3 8.3356E-14 20590 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 208.72 195.32 2537600000 166060000 190090000 145450000 107840000 95029000 106970000 222430000 204940000 197630000 97134000 101380000 97576000 84699000 73864000 73491000 4313000 3906200 3766100 81318000 84571000 89318000 91586000 92544000 121730000 6300 548 6145 116868;116869;116870;116871;116872;116873;116874;116875;116876;116877;116878;116879;116880;116881;116882;116883;116884;116885;116886;116887;116888;116889;116890;116891;116892;116893;116894;116895;116896;116897;116898;116899;116900;116901;116902;116903;116904;116905;116906;116907;116908;116909;116910;116911;116912;116913;116914;116915 71525;71526;71527;71528;71529;71530;71531;71532;71533;71534;71535;71536;71537;71538;71539;71540;71541;71542;71543;71544;71545;71546;71547;71548;71549;71550;71551;71552;71553;71554;71555;71556;71557;71558;71559;71560;71561;71562 71539 38 FLGAELPYSVTVEIER Unmodified 1821.9513 0.95126548 125 P06616 era GTPase Era yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.151 50.843 2 3.8124E-10 23936 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 146.07 130.53 233330000 21863000 21016000 20131000 3265500 0 0 19519000 20576000 20233000 4178500 3823400 3581800 14295000 12092000 12768000 0 0 0 18493000 19025000 18474000 0 0 0 6301 125 6146 116916;116917;116918;116919;116920;116921;116922;116923;116924;116925;116926;116927;116928;116929;116930;116931 71563;71564;71565;71566;71567;71568;71569;71570;71571;71572 71570 10 FLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEAR Unmodified 3741.8859 0.88585181 53 P00935 metB Cystathionine gamma-synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 3 2 1 1 1 1 1 1 2 1 1 2 2 2 49.497 48.047 3;4 0.16384 24152 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 2.3708 0.8256 528030000 0 0 0 79619000 66594000 81766000 22892000 15489000 7062500 4845400 7012100 5340100 0 0 4348800 0 0 0 10954000 4425500 2554100 81753000 67737000 65641000 6302 53 6147 116932;116933;116934;116935;116936;116937;116938;116939;116940;116941;116942;116943;116944;116945;116946;116947;116948;116949;116950;116951;116952;116953;116954;116955;116956 71573;71574 71573 2 FLGLEFPR Unmodified 977.53345 0.53345218 1297 P27278 nadR Trifunctional NAD biosynthesis/regulator protein NadR;Transcriptional regulator NadR;Nicotinamide mononucleotide adenylyltransferase;Ribosylnicotinamide kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 46.971 45.687 2 0.0016218 22395 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.32 91.115 19927000 4776100 6159400 5853900 0 0 0 0 0 0 0 0 0 0 1965500 0 0 0 0 1172200 0 0 0 0 0 6303 1297 6148 116957;116958;116959;116960;116961 71575;71576;71577 71575 3 FLGVGEK Unmodified 748.41194 0.41194006 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.73 21.706 2 0.016718 7385 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.462 58.172 286060000 0 26788000 25676000 0 6805600 8329800 16889000 20325000 18906000 34495000 23306000 0 0 0 20704000 0 0 0 42863000 0 40978000 0 0 0 6304 1009 6149 116962;116963;116964;116965;116966;116967;116968;116969;116970;116971;116972;116973 71578 71578 1 FLHDFEGTVVAITHDR Unmodified 1855.9217 0.92169668 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 3 3 2 2 2 3 4 4 1 1 2 3 3 3 1 1 4 4 3 1 1 1 37.305 35.596 2;3;4 3.6634E-24 17031 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 179.56 167.64 4406400000 425940000 419310000 328690000 11401000 12403000 10471000 336090000 359660000 356360000 9388400 6478600 12347000 250340000 268320000 258800000 0 4843900 4335500 417790000 472970000 425080000 5854200 4116100 5422900 6305 561 6150 116974;116975;116976;116977;116978;116979;116980;116981;116982;116983;116984;116985;116986;116987;116988;116989;116990;116991;116992;116993;116994;116995;116996;116997;116998;116999;117000;117001;117002;117003;117004;117005;117006;117007;117008;117009;117010;117011;117012;117013;117014;117015;117016;117017;117018;117019;117020;117021;117022;117023;117024;117025;117026;117027;117028 71579;71580;71581;71582;71583;71584;71585;71586;71587;71588;71589;71590;71591;71592;71593;71594;71595;71596;71597;71598;71599;71600;71601;71602;71603;71604;71605;71606;71607;71608;71609;71610;71611;71612 71593 34 FLHDGQWSPK Unmodified 1213.588 0.58800695 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 2 2 1 1 1 1 1 1 1 1 2 2 2 2 2 2 1 1 1 19.93 20.318 2;3 6.4571E-05 7452 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 113.62 97.082 965800000 91791000 128840000 108210000 1140300 1282500 1076700 42061000 33627000 43414000 1049800 0 1061500 79712000 76701000 44997000 0 0 0 90118000 107670000 111130000 684020 710740 528990 6306 52 6151 117029;117030;117031;117032;117033;117034;117035;117036;117037;117038;117039;117040;117041;117042;117043;117044;117045;117046;117047;117048;117049;117050;117051;117052;117053;117054;117055;117056 71613;71614;71615;71616;71617;71618;71619;71620;71621;71622;71623;71624 71624 12 FLIDAQLR Unmodified 974.55492 0.5549159 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.499 35.598 2 0.00037013 17341 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.02 54.377 96447000 0 0 0 0 0 0 7522500 11406000 8469600 679230 0 0 7696400 5596700 7299800 0 0 0 10112000 12831000 13025000 3744700 4168000 3896400 6307 193 6152 117057;117058;117059;117060;117061;117062;117063;117064;117065;117066;117067;117068;117069 71625;71626;71627;71628;71629;71630;71631;71632 71628 8 FLIVTDEATANMLTDK Unmodified 1780.8917 0.89170169 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 3 1 2 3 3 2 3 2 47.775 46.407 2;3 1.4131E-13 22869 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 207.88 201.44 756490000 85566000 97921000 76615000 0 0 0 60366000 69521000 53275000 0 0 0 53565000 54788000 47829000 0 0 0 50535000 52431000 54073000 0 0 0 6308 784 6153 117070;117071;117072;117073;117074;117075;117076;117077;117078;117079;117080;117081;117082;117083;117084;117085;117086;117087;117088;117089;117090;117091;117092;117093;117094;117095 71633;71634;71635;71636;71637;71638;71639;71640;71641;71642;71643;71644;71645;71646 71634 12 FLLANLNGFDPAK Unmodified 1418.7558 0.75580056 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.842 48.435 2 1.0077E-06 23940 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 163.64 141.55 640360000 74488000 69563000 70405000 0 0 0 42587000 41361000 45335000 0 0 0 42846000 37629000 41035000 0 0 0 59490000 57213000 58411000 0 0 0 6309 58 6154 117096;117097;117098;117099;117100;117101;117102;117103;117104;117105;117106;117107 71647;71648;71649;71650;71651;71652;71653;71654;71655;71656;71657;71658 71649 12 FLLATTDPQK Unmodified 1132.6128 0.61282471 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 28.509 27.211 2 6.3304E-05 12485 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.86 124.94 214920000 29638000 24724000 19590000 0 0 0 16693000 18213000 17319000 0 0 948640 10141000 9039400 11854000 0 0 0 20031000 20266000 16469000 0 0 0 6310 127 6155 117108;117109;117110;117111;117112;117113;117114;117115;117116;117117;117118;117119;117120 71659;71660 71660 2 FLLDANLGK Unmodified 989.55458 0.55458155 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.895 36.193 2 0.00036516 17802 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 112.17 99.344 5300200000 332860000 298580000 261230000 1491000 1451200 1671800 611450000 627260000 601860000 3551100 0 0 464490000 415000000 447500000 0 1227600 0 397150000 409150000 417660000 2640900 2157100 1835700 6311 1184 6156 117121;117122;117123;117124;117125;117126;117127;117128;117129;117130;117131;117132;117133;117134;117135;117136;117137;117138;117139;117140 71661;71662;71663;71664;71665;71666;71667;71668;71669;71670;71671;71672;71673 71662 13 FLLDANLGKGEGDKEK Unmodified 1732.8996 0.89956426 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.12 23.048 3 0.010424 8506 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 46.319 33.692 29970000 0 0 0 3675400 2909900 3030300 0 0 2790600 4790300 0 4965300 0 0 0 0 0 0 2552100 1513400 0 3742700 0 0 6312 1184 6157 117141;117142;117143;117144;117145;117146;117147;117148;117149 71674;71675 71674 2 FLLPLFR Unmodified 904.55346 0.55345934 165 P07648 recC RecBCD enzyme subunit RecC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.157 51.717 2 0.0016613 25861 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.05 115.86 50201000 5255600 4200400 3918900 0 0 0 3673400 4286300 4828300 0 0 0 3564100 3075500 2929800 0 0 0 4980300 3638600 5849700 0 0 0 6313 165 6158 117150;117151;117152;117153;117154;117155;117156;117157;117158;117159;117160;117161 71676;71677 71676 2 FLLQEVLEK Unmodified 1117.6383 0.63831118 778 P0ADA5 yajG Uncharacterized lipoprotein YajG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.342 44.721 2 0.00017664 20739 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.61 115.23 564710000 25694000 30661000 25523000 7507600 6944700 5610400 27689000 26517000 25597000 20578000 19046000 17980000 29465000 28443000 31992000 0 0 0 68088000 66547000 67171000 12515000 10767000 10375000 6314 778 6159 117162;117163;117164;117165;117166;117167;117168;117169;117170;117171;117172;117173;117174;117175;117176;117177;117178;117179;117180;117181;117182 71678;71679;71680;71681;71682;71683;71684;71685;71686;71687;71688;71689;71690;71691;71692;71693;71694;71695;71696;71697;71698 71698 21 FLLTISGTENAYAK Unmodified 1526.7981 0.7980593 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 41.596 39.435 2 0.044698 15462 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 49.5 42.612 19624000 0 0 0 0 0 0 3011800 0 2677900 3344500 0 4532000 0 0 0 0 0 0 0 0 2085400 1880600 0 2091300 6315 1494 6160 117183;117184;117185;117186;117187;117188;117189 71699 71699 0 FLLVEGVHQK Unmodified 1168.6604 0.66044361 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 1 24.108 23.191 2;3 1.8445E-06 9978 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.54 156.59 1803700000 374490000 393260000 365230000 1305700 1526700 1533100 99619000 93622000 91836000 0 0 0 49331000 57244000 66954000 0 0 0 71369000 66940000 68828000 587930 0 0 6316 555 6161 117190;117191;117192;117193;117194;117195;117196;117197;117198;117199;117200;117201;117202;117203;117204;117205;117206;117207;117208;117209;117210;117211;117212;117213;117214;117215;117216;117217;117218 71700;71701;71702;71703;71704;71705;71706;71707;71708;71709;71710;71711;71712;71713;71714;71715;71716;71717;71718;71719;71720;71721;71722;71723;71724;71725 71714 25 FLLVEPGGTVHFYDK Unmodified 1720.8825 0.88245763 1976 Q47679 yafV Hydrolase YafV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.507 39.872 3 6.1225E-07 19254 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 92.935 90.884 144030000 23941000 25318000 17162000 0 0 0 14520000 12740000 0 0 0 0 8240700 8039900 8188200 0 0 0 7057300 9566400 9254600 0 0 0 6317 1976 6162 117219;117220;117221;117222;117223;117224;117225;117226;117227;117228;117229 71726;71727;71728 71728 3 FLLVEPGGTVHFYDKR Unmodified 1876.9836 0.98356866 1976 Q47679 yafV Hydrolase YafV yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 35.39 33.865 4 7.6015E-05 16250 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 62.378 52.039 58941000 10355000 11035000 6741200 0 0 0 7087800 4884400 5490200 0 0 0 0 5276600 3001100 0 0 0 0 0 5069000 0 0 0 6318 1976 6163 117230;117231;117232;117233;117234;117235;117236;117237;117238 71729;71730 71730 1 FLLVTQNIDNLHER Unmodified 1710.9053 0.90531834 1799 P75960 cobB NAD-dependent protein deacylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 2 2 2 2 2 2 2 1 1 1 35.978 34.226 2;3 3.3542E-13 15723 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 213.34 210.23 1016200000 88587000 100640000 89189000 2296700 0 1730500 69263000 61959000 63678000 14748000 13066000 11755000 73092000 79106000 75698000 0 0 0 85214000 84673000 84600000 5204900 6296900 5374100 6319 1799 6164 117239;117240;117241;117242;117243;117244;117245;117246;117247;117248;117249;117250;117251;117252;117253;117254;117255;117256;117257;117258;117259;117260;117261;117262;117263;117264;117265;117266;117267;117268;117269;117270;117271;117272 71731;71732;71733;71734;71735;71736;71737;71738;71739;71740;71741 71741 10 FLNAEIIEDILDR Unmodified 1559.8195 0.81952302 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 55.228 53.754 2;3 7.402E-18 26699 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 261.41 249.36 5105900000 324640000 309430000 299730000 0 4164900 0 415680000 365390000 347660000 6647700 0 0 553700000 483020000 466930000 0 0 0 471980000 558350000 498620000 0 0 0 6320 1189 6165 117273;117274;117275;117276;117277;117278;117279;117280;117281;117282;117283;117284;117285;117286;117287;117288;117289;117290;117291;117292;117293;117294;117295;117296;117297;117298 71742;71743;71744;71745;71746;71747;71748;71749;71750;71751;71752;71753;71754;71755;71756;71757;71758;71759;71760;71761;71762;71763 71744 22 FLNDFPGAETIR Unmodified 1378.6881 0.68811492 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.237 38.822 2 3.7803E-08 14400 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 160.53 155.92 177100000 14848000 12915000 10859000 0 0 0 0 10163000 0 0 5087800 1930900 7655000 6900400 7277300 28429000 13188000 18325000 0 16529000 13154000 4731400 5110900 0 6321 80 6166 117299;117300;117301;117302;117303;117304;117305;117306;117307;117308;117309;117310;117311;117312;117313;117314 71764;71765;71766;71767;71768;71769;71770 71764 4 FLNDPQAFNEAFAR Unmodified 1638.7791 0.77905519 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1 1 2 3 3 1 1 1 2 3 2 2 3 2 1 43.153 41.501 2;3 2.5305E-26 20164 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 229.29 225.53 3788000000 401760000 403330000 343390000 1923600 1930200 2256500 476090000 476000000 437170000 2699200 2298000 1662900 199400000 200790000 190110000 0 0 0 210570000 222780000 212060000 1802900 0 0 6322 1086 6167 117315;117316;117317;117318;117319;117320;117321;117322;117323;117324;117325;117326;117327;117328;117329;117330;117331;117332;117333;117334;117335;117336;117337;117338;117339;117340;117341;117342;117343;117344;117345;117346;117347;117348;117349;117350 71771;71772;71773;71774;71775;71776;71777;71778;71779;71780;71781;71782;71783;71784;71785;71786;71787;71788;71789 71783 15 FLNLIAGEPDIAR Unmodified 1427.7773 0.77726428 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.665 45.205 2 3.7704E-05 21270 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.67 107.15 139730000 0 0 18912000 2941300 3091600 1755400 18100000 16677000 0 6268400 5748900 5751800 11384000 0 0 1917100 1340600 0 18636000 0 20634000 3745800 2831100 0 6323 1083 6168 117351;117352;117353;117354;117355;117356;117357;117358;117359;117360;117361;117362;117363;117364;117365;117366 71790;71791;71792;71793;71794;71795;71796;71797;71798 71798 8 FLNTLYTMGPSPEPNMTILWSEK Unmodified 2668.2917 0.29169685 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 54.707 53.264 2;3 2.7497E-35 25204 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 272.35 249.37 3530400000 163880000 137900000 149950000 3006900 2422600 2627000 411450000 402540000 394200000 4881600 3779600 4155100 367120000 380750000 361540000 0 0 0 261740000 250500000 225330000 0 2644800 0 6324 212 6169 117367;117368;117369;117370;117371;117372;117373;117374;117375;117376;117377;117378;117379;117380;117381;117382;117383;117384;117385;117386;117387;117388;117389;117390;117391;117392;117393;117394;117395;117396;117397 71799;71800;71801;71802;71803;71804;71805;71806;71807;71808;71809;71810;71811;71812;71813;71814;71815;71816;71817;71818;71819;71820;71821 71819 23 FLNYVSLDTQSK Unmodified 1413.714 0.71399532 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 36.467 34.806 2 3.7817E-08 16635 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 194.94 188.98 752500000 58492000 57808000 44400000 0 0 0 111090000 102450000 105470000 1042300 0 0 56607000 43948000 37641000 0 0 0 49541000 44930000 39082000 0 0 0 6325 1333 6170 117398;117399;117400;117401;117402;117403;117404;117405;117406;117407;117408;117409;117410 71822;71823;71824;71825;71826;71827;71828;71829;71830;71831;71832;71833 71827 12 FLPAIDAIK Unmodified 986.58007 0.58006802 1698 P64612 zapE Cell division protein ZapE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.834 37.206 2 0.0074948 18061 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.169 51.122 125300000 14322000 11629000 12894000 3370400 3061600 3492800 13123000 11856000 12840000 5927100 5353100 4752400 0 0 0 1567600 904030 866810 0 0 11880000 2270900 2947500 2240600 6326 1698 6171 117411;117412;117413;117414;117415;117416;117417;117418;117419;117420;117421;117422;117423;117424;117425;117426;117427;117428;117429 71834;71835;71836;71837;71838;71839;71840;71841;71842;71843;71844 71842 11 FLPDGQR Unmodified 831.4239 0.42390173 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 0 By MS/MS By MS/MS 1 1 15.173 15.826 2 0.027552 5450 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 71.359 51.477 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6327 1413 6172 117430;117431 71845;71846 71845 2 FLPNLHSHR Unmodified 1119.5938 0.59376103 356 P0A7M2 rpmB 50S ribosomal protein L28 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 13.42 14.03 2;3 0.00041638 3018 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 110.81 76 6135600000 859310000 803400000 680090000 41748000 42645000 41075000 206870000 287790000 219410000 73199000 65387000 66493000 396790000 346410000 259630000 170160000 109350000 101680000 358130000 421220000 357630000 85638000 69467000 72050000 6328 356 6173 117432;117433;117434;117435;117436;117437;117438;117439;117440;117441;117442;117443;117444;117445;117446;117447;117448;117449;117450;117451;117452;117453;117454;117455;117456;117457;117458;117459;117460;117461;117462;117463;117464;117465;117466;117467;117468;117469;117470;117471;117472;117473;117474;117475;117476;117477;117478 71847;71848;71849;71850;71851;71852;71853;71854;71855;71856;71857;71858;71859;71860;71861;71862;71863;71864;71865;71866;71867;71868;71869;71870;71871;71872;71873;71874;71875;71876;71877;71878 71870 32 FLPNPHWDPK Unmodified 1249.6244 0.62439245 410 P0A894 rapZ RNase adapter protein RapZ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 25.89 24.731 3 0.13524 10938 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 25.474 19.169 154170000 21405000 22592000 20553000 0 0 0 12838000 13862000 9898300 867440 0 0 8454000 10579000 8471000 0 0 0 8696700 8247400 7703200 0 0 0 6329 410 6174 117479;117480;117481;117482;117483;117484;117485;117486;117487;117488;117489;117490;117491 71879;71880;71881 71880 3 FLPPTPVR Unmodified 925.53854 0.53853756 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 2 1 1 26.177 25.155 2 0.0020054 10602 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 104.11 99.713 6347400000 25650000 24917000 20466000 0 545340 654890 31006000 26541000 27702000 688350000 630360000 606920000 30212000 24676000 28046000 1083600000 640380000 679020000 36261000 32550000 32367000 534850000 552190000 590140000 6330 1616 6175 117492;117493;117494;117495;117496;117497;117498;117499;117500;117501;117502;117503;117504;117505;117506;117507;117508;117509;117510;117511;117512;117513;117514;117515;117516;117517;117518;117519 71882;71883;71884;71885;71886;71887;71888;71889;71890;71891;71892;71893;71894;71895;71896;71897;71898;71899;71900;71901;71902;71903;71904;71905;71906;71907;71908;71909;71910;71911;71912;71913;71914 71914 33 FLPSFIDNIDNLMAK Unmodified 1736.8807 0.88074307 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.013 53.564 2 7.4046E-15 26222 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 183 179.38 2103000000 175600000 196240000 182600000 4208300 4794500 4633400 148670000 143580000 145180000 0 4277200 3223100 155550000 149310000 145530000 0 0 0 207180000 215610000 205130000 7314000 0 4326800 6331 1143 6176 117520;117521;117522;117523;117524;117525;117526;117527;117528;117529;117530;117531;117532;117533;117534;117535;117536;117537;117538 71915;71916 71916 2 FLPTIFK Unmodified 864.51093 0.51092582 579 P0AA89 dosC Diguanylate cyclase DosC yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 40.013 38.574 2 0.030014 18582 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 67.035 67.035 20923000 7901100 7574900 5447400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6332 579 6177 117539;117540;117541 71917 71917 1 FLQLYHTR Unmodified 1076.5767 0.57671398 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 22.348 22.019 3 0.039838 6815 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 47.198 44.408 19167000 0 3980600 0 2428800 1610500 2631600 0 0 2200900 0 0 0 0 0 0 0 0 0 0 0 5206400 0 0 1108000 6333 1937 6178 117542;117543;117544;117545;117546;117547;117548 71918;71919 71918 2 FLREEMGVK Unmodified 1107.5747 0.57466507 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 1 17.07 17.682 2;3 1.7592E-05 6342 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.52 157.1 2591900000 327190000 336710000 266810000 4058900 1965300 1484700 196580000 154490000 168340000 1565300 1519800 0 128670000 109630000 113180000 0 989520 789290 258240000 261690000 253950000 1213600 1462400 1401100 6334 179 6179 117549;117550;117551;117552;117553;117554;117555;117556;117557;117558;117559;117560;117561;117562;117563;117564;117565;117566;117567;117568;117569;117570;117571;117572;117573;117574;117575;117576;117577;117578;117579;117580;117581;117582;117583 71920;71921;71922;71923;71924;71925;71926;71927;71928;71929;71930;71931;71932;71933;71934;71935;71936;71937;71938 71927 18 FLSALAGENDPEAK Unmodified 1460.7147 0.7147236 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 2 2 2 29.8 28.492 2;3 7.0947E-11 13170 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 211.68 207.76 5044300000 357550000 357110000 340690000 0 0 1989100 372790000 372090000 325500000 0 0 0 451800000 453360000 434070000 0 854290 0 545370000 512030000 519080000 0 0 0 6335 86 6180 117584;117585;117586;117587;117588;117589;117590;117591;117592;117593;117594;117595;117596;117597;117598;117599;117600;117601;117602;117603;117604;117605;117606;117607;117608;117609 71939;71940;71941;71942;71943;71944;71945;71946;71947;71948;71949;71950;71951;71952;71953;71954 71944 16 FLSAPEAVEYGLVDSILTHR Unmodified 2216.1477 0.14773345 243 P0A6G7 clpP ATP-dependent Clp protease proteolytic subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 54.409 52.975 2;3 1.206E-56 26302 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 290.34 285.49 11592000000 1084700000 1097200000 1039100000 2241000 2199300 2887700 957410000 807240000 716730000 0 0 0 1096100000 1091800000 1033900000 0 0 0 937470000 888640000 834700000 0 0 0 6336 243 6181 117610;117611;117612;117613;117614;117615;117616;117617;117618;117619;117620;117621;117622;117623;117624;117625;117626;117627;117628;117629;117630;117631;117632;117633;117634;117635;117636 71955;71956;71957;71958;71959;71960;71961;71962;71963;71964;71965;71966;71967;71968;71969;71970;71971;71972;71973;71974;71975;71976 71956 22 FLSELTAAEGLER Unmodified 1434.7355 0.73545904 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 41.077 39.254 2;3 9.197E-07 19036 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 160.36 142.92 3062800000 258800000 230840000 202630000 5643300 6029000 6023900 171190000 146250000 144420000 6080900 6616700 6470000 193310000 198220000 190680000 0 0 0 429520000 419110000 383460000 18623000 19822000 19048000 6337 937 6182 117637;117638;117639;117640;117641;117642;117643;117644;117645;117646;117647;117648;117649;117650;117651;117652;117653;117654;117655;117656;117657;117658;117659;117660;117661;117662;117663;117664;117665;117666;117667;117668;117669;117670;117671;117672;117673 71977;71978;71979;71980;71981;71982;71983;71984;71985;71986;71987;71988;71989;71990;71991;71992;71993;71994;71995;71996;71997 71983 19 FLSGYHQL Unmodified 963.48142 0.48141661 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.911 25.697 2 0.086738 11705 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 52.018 39.662 270150000 18817000 16806000 14901000 0 0 0 19293000 16405000 18726000 2487200 2186000 0 18154000 23889000 20301000 0 0 1344700 33487000 31954000 31401000 0 0 0 6338 491 6183 117674;117675;117676;117677;117678;117679;117680;117681;117682;117683;117684;117685;117686;117687;117688 71998;71999;72000;72001 71998 2 FLSQPFFVAEVFTGSPGK Unmodified 1956.9986 0.99855002 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 2 3 3 2 2 2 2 2 2 2 2 2 3 2 4 3 2 2 54.983 53.694 2;3 6.1688E-37 21533 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 188.58 185.16 6600800000 129750000 129030000 127540000 89792000 86367000 83824000 394740000 345100000 364040000 343930000 374490000 303210000 463360000 426150000 439650000 62695000 58708000 53738000 537560000 534700000 537580000 245090000 247660000 222140000 6339 646 6184 117689;117690;117691;117692;117693;117694;117695;117696;117697;117698;117699;117700;117701;117702;117703;117704;117705;117706;117707;117708;117709;117710;117711;117712;117713;117714;117715;117716;117717;117718;117719;117720;117721;117722;117723;117724;117725;117726;117727;117728;117729;117730;117731;117732;117733;117734;117735;117736;117737;117738;117739;117740;117741;117742;117743 72002;72003;72004;72005;72006;72007;72008;72009;72010;72011;72012;72013;72014;72015;72016;72017;72018;72019;72020;72021;72022;72023;72024;72025;72026;72027;72028;72029;72030;72031;72032;72033;72034;72035;72036;72037 72011 36 FLTCGSVDDGK Unmodified 1197.5336 0.53358811 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.844 20.24 2 4.2052E-14 7417 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 205.12 195.13 1881100000 116300000 100220000 105350000 1870000 1975100 2557100 141180000 152300000 152560000 3492700 0 0 136940000 123440000 138620000 0 0 0 226420000 236060000 239750000 0 0 2061300 6340 1218 6185 117744;117745;117746;117747;117748;117749;117750;117751;117752;117753;117754;117755;117756;117757;117758;117759;117760;117761 72038;72039;72040;72041;72042;72043;72044;72045;72046;72047;72048;72049;72050;72051;72052;72053 72053 16 FLTDDTR Unmodified 866.4134 0.41339662 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 17.446 18.04 2 0.13242 6562 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 58.604 41.043 194460000 0 0 0 0 0 0 35562000 35391000 33463000 0 277800 0 14289000 15174000 16179000 0 0 0 15078000 15780000 13268000 0 0 0 6341 1836 6186 117762;117763;117764;117765;117766;117767;117768;117769;117770;117771 72054 72054 0 FLVAQSGVLITQVR Unmodified 1529.893 0.89296274 42 P00861 lysA Diaminopimelate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 43.249 41.654 2 6.4412E-07 20226 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.63 80.4 27369000 11263000 6798100 4641200 0 0 0 2774200 1892800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6342 42 6187 117772;117773;117774;117775;117776 72055;72056 72056 1 FLVCNEDIDHIIGYVDSK Unmodified 2136.0198 0.019755749 832 P0AE45 ytfL UPF0053 inner membrane protein YtfL yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 50.406 48.966 3 0.0052115 19646 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 47.204 44.626 59125000 0 4656900 0 0 0 0 8673900 6270100 6815200 0 6408600 5117000 3399500 0 4935900 0 0 0 0 7262000 5585500 0 0 0 6343 832 6188 117777;117778;117779;117780;117781;117782;117783;117784;117785;117786 72057 72057 1 FLVNVGLNYLTLSR Unmodified 1607.9035 0.90352742 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 2 2 1 1 1 53.713 52.991 2;3 1.0407E-10 19934 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 180.07 176.53 182710000 4337000 5218600 3801000 0 0 0 0 0 0 0 0 0 0 0 2449200 55628000 51490000 50702000 2923800 2144500 4012300 0 0 0 6344 222 6189 117787;117788;117789;117790;117791;117792;117793;117794;117795;117796;117797;117798;117799 72058;72059;72060;72061 72061 4 FLVTIDPLNTETSNFWQNHGELNEVDSSK Unmodified 3333.579 0.57896499 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.468 51.194 3 9.8948E-08 18484 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 97.441 95.436 142800000 9436100 9434200 8192900 5310000 5788400 6209600 11251000 7244100 0 6097100 0 0 10639000 9484000 7946800 0 0 0 12912000 12945000 14016000 5892000 0 0 6345 1393 6190 117800;117801;117802;117803;117804;117805;117806;117807;117808;117809;117810;117811;117812;117813;117814;117815 72062 72062 1 FLVVDDFSTMR Unmodified 1328.6435 0.64347291 837 P0AE67 cheY Chemotaxis protein CheY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 46.442 44.947 2 1.2555E-19 21768 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 230.7 211.43 914680000 305130000 296240000 270290000 0 4709400 0 6259400 6236200 5055100 0 0 0 2794000 2181800 3470500 0 0 0 3582300 4211600 4523800 0 0 0 6346 837 6191 117816;117817;117818;117819;117820;117821;117822;117823;117824;117825;117826;117827;117828 72063;72064;72065;72066 72066 4 FLVVDDFSTMR Oxidation (M) 1344.6384 0.63838754 837 P0AE67 cheY Chemotaxis protein CheY yes yes 0 1 0 By MS/MS 1 41.728 40.175 2 0.040865 19920 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 45.161 26.849 4684700 4684700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6347 837 6191 117829 72067 72067 393 0 FLVYASPAVAEALK Unmodified 1477.8181 0.81806646 526 P0A9J0 rng Ribonuclease G yes yes 0 0 0 By MS/MS 1 45.431 44.124 2 0.016956 21586 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 59.542 41.722 4399900 0 4399900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6348 526 6192 117830 72068 72068 0 FLWIGCSDSR Unmodified 1239.5706 0.57064232 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.703 39.898 2 7.9382E-09 19392 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 187 184.32 1606400000 187070000 186850000 173140000 1675400 1695400 1219800 75303000 75543000 81484000 1744500 0 0 114040000 119140000 102170000 0 0 0 152310000 174940000 154430000 1662100 847760 1180000 6349 1639 6193 117831;117832;117833;117834;117835;117836;117837;117838;117839;117840;117841;117842;117843;117844;117845;117846;117847;117848;117849 72069;72070;72071;72072;72073;72074;72075;72076;72077;72078;72079;72080 72073 12 FMALGSGVIIDADK Unmodified 1435.7381 0.73810158 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 44.543 42.64 2 1.6822E-07 20626 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 150.46 138.41 55205000 0 0 0 0 0 0 0 0 55205000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6350 1044 6194 117850;117851;117852;117853;117854;117855;117856;117857;117858;117859;117860 72081;72082;72083;72084;72085;72086;72087;72088;72089;72090;72091 72086 11 FMALGSGVIIDADK Oxidation (M) 1451.733 0.7330162 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 38.693 36.714 2 0.019475 17079 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 53.967 47.654 21474000 0 0 0 0 0 0 6553400 4828700 4872800 0 0 0 0 5219400 0 0 0 0 0 0 0 0 0 0 6351 1044 6194 117861;117862;117863;117864 72092 72092 464 1 FMALGSGVIIDADKGYVVTNNHVVDNATVIK Unmodified 3259.6911 0.69109839 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 43.628 42.381 4 1.1528E-12 17012 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 119.22 118.39 170370000 0 0 0 9396400 10340000 0 0 0 0 0 38152000 0 0 0 12869000 7141600 10290000 7692800 0 0 0 28057000 22849000 23577000 6352 1044 6195 117865;117866;117867;117868;117869;117870;117871;117872;117873;117874 72093;72094;72095;72096;72097;72098;72099;72100;72101 72096 9 FMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVK Unmodified 4114.102 0.1019926 52 P00934 thrC Threonine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.928 50.68 5 1.9537E-08 24917 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.171 87.171 452780000 65143000 66805000 68598000 1967700 1984300 3594400 14708000 20105000 22532000 0 0 0 20943000 17463000 21449000 0 0 0 43201000 44600000 39685000 0 0 0 6353 52 6196 117875;117876;117877;117878;117879;117880;117881;117882;117883;117884;117885;117886;117887;117888;117889 72102;72103;72104 72102 3 FMAQYQELK Unmodified 1156.5587 0.55868065 1773 P75792 ybiV Sugar phosphatase YbiV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 25.378 24.409 2 0.00034988 10843 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 113.5 107.33 95788000 0 0 0 0 0 0 0 0 0 0 0 0 15522000 0 14173000 0 0 0 24678000 18320000 23095000 0 0 0 6354 1773 6197 117890;117891;117892;117893;117894;117895;117896 72105;72106;72107;72108;72109;72110;72111 72109 7 FMAQYQQMK Unmodified 1173.5311 0.53108569 1775 P75809 ybjI Flavin mononucleotide phosphatase YbjI yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 20.998 21.296 2 7.329E-05 8003 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 143.02 137.27 136930000 0 0 0 0 0 0 12725000 11544000 12475000 0 0 0 15399000 13318000 14656000 0 0 0 14957000 23684000 18174000 0 0 0 6355 1775 6198 117897;117898;117899;117900;117901;117902;117903;117904;117905 72112;72113;72114;72115;72116;72117;72118;72119;72120 72120 7 FMASEIIR Unmodified 965.50044 0.50043749 125 P06616 era GTPase Era yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.439 28.992 2 0.00091102 13555 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.93 99.203 268200000 38220000 40544000 0 1525700 1564700 2175200 31475000 33121000 34375000 0 0 0 24286000 0 22000000 0 0 0 0 38917000 0 0 0 0 6356 125 6199 117906;117907;117908;117909;117910;117911;117912;117913;117914;117915;117916;117917;117918;117919 72121;72122;72123;72124;72125;72126;72127;72128;72129;72130;72131;72132 72128 11 FMASGDTSR Unmodified 970.41783 0.41783007 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.468 13.064 2 0.0070851 3169 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 68.625 65.233 83769000 0 4002600 0 0 0 0 19862000 4825600 4395100 3716700 3817500 4492100 0 11003000 20918000 0 0 0 0 4059900 0 1548800 0 1128400 6357 1877 6200 117920;117921;117922;117923;117924;117925;117926;117927;117928;117929;117930;117931 72133;72134 72133 1 FMDDHGFLDIETPMLTK Unmodified 2008.9274 0.92743527 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 2 2 2 50.97 49.845 2;3 1.2537E-61 24520 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 299.04 284.8 3799100000 159350000 154250000 146030000 993310 1157200 467720 371520000 418490000 366970000 0 0 0 342830000 323170000 337550000 1101900 895410 1205800 380620000 413220000 379270000 0 0 0 6358 1189 6201 117932;117933;117934;117935;117936;117937;117938;117939;117940;117941;117942;117943;117944;117945;117946;117947;117948;117949;117950;117951;117952;117953;117954;117955;117956;117957;117958;117959;117960;117961 72135;72136;72137;72138;72139;72140;72141;72142;72143;72144;72145;72146;72147;72148;72149;72150;72151;72152;72153;72154;72155 72140 21 FMDDHGFLDIETPMLTK Oxidation (M) 2024.9223 0.92234989 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.105 46.739 3 0.011858 22952 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 43.208 42.519 104310000 8720800 11657000 6212200 0 0 0 12948000 0 10506000 0 0 0 8498600 9346400 6876300 0 0 0 11721000 9630700 8193100 0 0 0 6359 1189 6201 117962;117963;117964;117965;117966;117967;117968;117969;117970;117971;117972 72156 72156 501 1 FMDPLPPMHR Unmodified 1239.5893 0.58926927 1522 P39310 ytfB Uncharacterized protein YtfB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.023 29.558 3 0.0063131 11296 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 63.216 59.453 91909000 6722100 6023700 4935300 1880400 1933000 1646000 7338600 5848200 9178600 0 3372100 3774300 5267500 4008300 5096400 0 957310 0 5491700 6798000 6165600 1803600 1356000 2312500 6360 1522 6202 117973;117974;117975;117976;117977;117978;117979;117980;117981;117982;117983;117984;117985;117986;117987;117988;117989;117990;117991;117992;117993;117994 72157;72158 72158 2 FMELIDALAQETADMPLHVQTDR Unmodified 2643.2673 0.26727302 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 55.028 55.083 3 1.1557E-28 21540 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 187.19 175.89 145530000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23919000 45508000 76106000 0 0 0 0 0 0 6361 80 6203 117995;117996;117997 72159;72160 72159 2 FMGEPEFTIDNADQYPEILR Unmodified 2384.0995 0.099462633 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 53.466 52.034 2;3 5.6576E-46 25688 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 338.77 338.77 1588800000 145090000 139940000 126180000 6098300 2476100 1960600 119880000 116520000 113580000 15925000 13789000 12896000 114070000 116110000 103430000 0 0 0 149420000 146710000 131990000 4262700 0 8433300 6362 62 6204 117998;117999;118000;118001;118002;118003;118004;118005;118006;118007;118008;118009;118010;118011;118012;118013;118014;118015;118016;118017;118018;118019;118020;118021;118022;118023;118024;118025;118026;118027;118028;118029;118030;118031;118032;118033;118034 72161;72162;72163;72164;72165;72166;72167;72168;72169;72170;72171;72172;72173;72174;72175;72176;72177;72178;72179;72180;72181;72182;72183;72184;72185;72186 72168 26 FMHLDKDGAIR Unmodified 1301.655 0.65504065 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 18.56 18.956 3 0.0034895 7098 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.252 44.122 52032000 4514000 4200600 5033200 0 0 522000 8360000 0 5186400 807900 645050 0 0 0 0 0 0 0 7267000 6079700 9415700 0 0 0 6363 1450 6205 118035;118036;118037;118038;118039;118040;118041;118042;118043;118044;118045 72187;72188 72188 1 FMHVPELSR Unmodified 1114.5593 0.55934935 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 25.544 24.47 2;3 0.00019834 11417 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.309 89.369 735520000 45838000 47389000 37008000 0 0 0 49790000 49172000 57508000 0 0 0 65905000 61823000 69287000 0 0 0 90818000 82323000 78658000 0 0 0 6364 311 6206 118046;118047;118048;118049;118050;118051;118052;118053;118054;118055;118056;118057;118058 72189;72190;72191;72192;72193;72194;72195;72196;72197;72198;72199;72200;72201 72189 13 FMIDIDQAQR Unmodified 1235.5969 0.59685707 1263 P25552 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.413 34.857 2 0.070996 16672 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 49.418 43.777 101320000 7745900 8270100 4330200 0 0 0 8207500 5062200 6178400 0 0 0 7017400 7516400 8234500 0 0 0 13157000 13038000 12565000 0 0 0 6365 1263 6207 118059;118060;118061;118062;118063;118064;118065;118066;118067;118068;118069;118070 72202;72203;72204;72205 72203 0 FMLFYGMSSESAMK Unmodified 1627.7085 0.70845771 1623 P60560 guaC GMP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.85 48.444 2 1.6052E-06 23656 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.01 121.04 163440000 16923000 12546000 12642000 0 0 0 11680000 10300000 8539400 0 0 0 15405000 11861000 11586000 0 0 0 15917000 17566000 18480000 0 0 0 6366 1623 6208 118071;118072;118073;118074;118075;118076;118077;118078;118079;118080;118081;118082 72206;72207;72208;72209;72210;72211;72212;72213;72214 72207 8 FMLQDLLGVVSPGLKR Unmodified 1772.0019 0.001861261 1106 P15078 cstA Carbon starvation protein A yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 54.354 53.036 3 5.6775E-05 19366 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 81.619 78.558 16776000 0 0 0 4334900 5806400 6634900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6367 1106 6209 118083;118084;118085 72215 72215 1 FMNLAFQHMADTAER Unmodified 1780.8025 0.80250953 761 P0AD05 yecA Uncharacterized protein YecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.973 34.257 3 0.00018654 16754 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 69.729 68.363 142680000 22037000 18773000 19795000 563550 0 0 11734000 11138000 13125000 1089800 1598300 0 8810700 8641900 7874400 0 0 0 5956100 5823200 5719400 0 0 0 6368 761 6210 118086;118087;118088;118089;118090;118091;118092;118093;118094;118095;118096;118097;118098;118099;118100 72216;72217;72218;72219;72220 72217 5 FMNMHDNAK Unmodified 1106.4637 0.46373441 1529 P39353 yjhC Uncharacterized oxidoreductase YjhC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 12.312 13.101 3 0.037795 3837 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 37.556 35.52 44979000 11803000 10102000 8918900 0 0 0 0 4467600 3936400 0 0 0 0 0 2409900 0 0 0 3342000 0 0 0 0 0 6369 1529 6211 118101;118102;118103;118104;118105;118106;118107 72221 72221 1 FMQEAVPEGTGAMAAIIGLDDASIAK Unmodified 2605.2768 0.27677507 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 3 1 2 2 2 2 1 54.607 53.161 2;3 1.2029E-15 25974 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.52 140.97 2746200000 236570000 229480000 199470000 0 0 0 167450000 145930000 165260000 0 0 0 353200000 106400000 284680000 0 0 0 281490000 263210000 292380000 0 20686000 0 6370 597 6212 118108;118109;118110;118111;118112;118113;118114;118115;118116;118117;118118;118119;118120;118121;118122;118123;118124;118125;118126;118127;118128;118129;118130;118131;118132 72222;72223;72224;72225;72226;72227;72228;72229;72230;72231;72232;72233;72234;72235;72236;72237;72238;72239;72240 72229 19 FMQLQQQISAER Unmodified 1477.7347 0.73474754 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.15 28.582 2 1.3721E-11 13615 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 209.1 197.5 422330000 37563000 40176000 32752000 3853100 3170100 3094800 24183000 23368000 30809000 2219800 2009400 1975600 23989000 26568000 26479000 0 0 0 48894000 41947000 42367000 1997200 2824900 2088100 6371 863 6213 118133;118134;118135;118136;118137;118138;118139;118140;118141;118142;118143;118144;118145;118146;118147;118148;118149;118150;118151;118152;118153 72241;72242;72243;72244;72245;72246;72247;72248;72249;72250 72243 10 FMSACLK Unmodified 855.39828 0.39828061 955 P0AFM4 psiF Phosphate starvation-inducible protein PsiF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 19.223 19.844 2 0.12356 7275 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 49.59 45.372 371280000 49868000 50279000 46826000 0 0 360400 0 0 0 0 0 0 51662000 49372000 40271000 0 0 0 0 44201000 38440000 0 0 0 6372 955 6214 118154;118155;118156;118157;118158;118159;118160;118161;118162 72251 72251 1 FMSLFDK Unmodified 886.42588 0.42587556 754 P0ACW6 ydcH Uncharacterized protein YdcH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 38.007 36.198 2 0.0067903 16816 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.006 79.425 84434000 0 0 0 0 0 0 15980000 16301000 14149000 0 0 0 9156100 16028000 12819000 0 0 0 0 0 0 0 0 0 6373 754 6215 118163;118164;118165;118166;118167;118168 72252;72253;72254 72253 3 FMVMVSSNGGQQHIAK Unmodified 1732.8389 0.83889503 398 P0A855 tolB Protein TolB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.95 22.271 3 5.4267E-05 6892 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 66.285 62.251 125060000 5730000 7428300 7507100 5223800 6511000 3237800 0 6964600 9418400 4100800 3878300 6031900 4516800 3499000 4693400 0 0 0 9250600 9884200 10950000 7287500 5461900 3487200 6374 398 6216 118169;118170;118171;118172;118173;118174;118175;118176;118177;118178;118179;118180;118181;118182;118183;118184;118185;118186;118187;118188 72255;72256;72257;72258 72258 4 FMVNVEGR Unmodified 950.46439 0.46438634 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 24.914 24.069 2 0.00039154 10679 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.78 114.26 1055400000 161280000 159610000 147310000 0 0 0 0 0 0 0 0 0 114890000 89212000 83988000 0 0 0 113150000 96726000 89221000 0 0 0 6375 468 6217 118189;118190;118191;118192;118193;118194;118195;118196;118197 72259;72260;72261;72262;72263;72264;72265;72266 72262 8 FNAENPDYK Unmodified 1096.4825 0.48253882 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.309 15.975 2 6.3864E-06 5331 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 171.73 165.63 12322000000 126590000 99714000 96716000 3440700 3033000 3312200 1137200000 1090800000 959030000 0 2114000 0 971820000 913360000 900450000 0 2620400 0 2057000000 2031100000 1916700000 1739300 2204600 2592100 6376 993 6218 118198;118199;118200;118201;118202;118203;118204;118205;118206;118207;118208;118209;118210;118211;118212;118213;118214;118215;118216;118217 72267;72268;72269;72270;72271;72272;72273;72274;72275;72276;72277;72278;72279;72280;72281;72282 72272 16 FNAEVDEPR Unmodified 1075.4934 0.49343786 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.528 18.21 2 1.1629E-05 6341 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 164.53 147.61 181960000 12891000 10148000 10072000 0 0 0 20927000 21105000 24494000 0 0 0 18650000 12811000 12331000 0 0 0 12700000 13230000 12603000 0 0 0 6377 1364 6219 118218;118219;118220;118221;118222;118223;118224;118225;118226;118227;118228;118229 72283;72284;72285;72286 72285 3 FNAEVDEPRPGLR Unmodified 1498.7528 0.75284044 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 2 2 2 21.215 21.552 2;3 4.5986E-17 8869 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 217.14 202.72 2072500000 214400000 201560000 158540000 0 1212900 0 234030000 214270000 196840000 0 0 0 180970000 142420000 21577000 0 0 0 156940000 200930000 148840000 0 0 0 6378 1364 6220 118230;118231;118232;118233;118234;118235;118236;118237;118238;118239;118240;118241;118242;118243;118244;118245;118246;118247;118248;118249;118250;118251;118252;118253 72287;72288;72289;72290;72291;72292;72293;72294;72295;72296;72297;72298;72299;72300;72301;72302;72303;72304 72289 18 FNAFGDGVAQLGR Unmodified 1350.668 0.66804818 1585 P46130 ybhC Putative acyl-CoA thioester hydrolase YbhC yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 38.179 36.328 2 6.8002E-07 14646 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 142.43 128.22 23029000 0 0 0 2010400 2274300 2334600 0 0 0 3046500 3142000 0 0 0 0 2796200 0 0 0 0 0 2213600 2633400 2577900 6379 1585 6221 118254;118255;118256;118257;118258;118259;118260;118261;118262 72305;72306;72307;72308 72305 3 FNAIGEAVK Unmodified 947.50763 0.50763136 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.523 21.489 2 0.0043014 6404 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 78.516 59.785 363000000 56573000 59136000 56048000 14526000 15800000 10821000 31546000 9192200 0 14353000 9041700 12762000 0 0 25708000 4848200 3891800 3461400 0 0 5247000 9872400 9858800 10314000 6380 1829 6222 118263;118264;118265;118266;118267;118268;118269;118270;118271;118272;118273;118274;118275;118276;118277;118278;118279;118280;118281 72309;72310;72311;72312;72313;72314 72311 3 FNALYGEIFK Unmodified 1200.6179 0.61791009 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.487 42.972 2 0.00040052 20752 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.52 90.656 2667400000 177120000 193020000 173350000 0 0 0 241400000 237040000 224930000 0 0 0 239160000 207620000 205390000 0 0 0 268020000 253040000 247280000 0 0 0 6381 57 6223 118282;118283;118284;118285;118286;118287;118288;118289;118290;118291;118292;118293 72315;72316;72317;72318;72319;72320;72321;72322;72323;72324;72325 72322 9 FNDAVIR Unmodified 833.43955 0.43955179 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.737 19.093 2 0.00022358 6854 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 164.1 117.06 6857600000 837300000 902420000 774370000 30385000 30229000 25817000 328660000 346450000 328220000 88678000 62823000 61848000 406590000 365860000 326980000 30233000 17360000 21649000 571810000 617380000 594630000 32223000 29142000 26484000 6382 66 6224 118294;118295;118296;118297;118298;118299;118300;118301;118302;118303;118304;118305;118306;118307;118308;118309;118310;118311;118312;118313;118314;118315;118316;118317 72326;72327;72328;72329;72330;72331;72332;72333;72334;72335;72336;72337;72338;72339;72340;72341;72342;72343;72344;72345;72346;72347 72345 21 FNDGDFLR Unmodified 982.45084 0.45084476 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.716 29.427 2 3.0288E-06 14148 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.49 181.49 1181700000 38719000 45680000 0 0 0 0 130600000 136960000 125450000 47880000 0 0 76936000 73338000 63554000 28276000 21346000 20854000 102740000 117350000 112760000 12132000 14049000 13030000 6383 30 6225 118318;118319;118320;118321;118322;118323;118324;118325;118326;118327;118328;118329;118330;118331;118332;118333;118334;118335 72348;72349;72350;72351;72352;72353;72354;72355;72356;72357;72358;72359;72360;72361;72362 72349 15 FNDGDFLRAEQQGINAEK Unmodified 2050.9708 0.97083172 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 33.576 32.143 3 1.4491E-05 11392 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 97.235 93.847 60724000 0 0 0 0 0 0 0 0 0 9460500 6534100 7065600 0 0 0 9519600 5142500 5316800 0 8224900 0 3562400 2846000 3051100 6384 30 6226 118336;118337;118338;118339;118340;118341;118342;118343;118344;118345 72363 72363 1 FNDLLATLK Unmodified 1033.5808 0.5807963 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 40.205 38.508 2 5.3679E-06 19016 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.19 120.22 348070000 65986000 56945000 0 0 820860 0 0 5234800 0 0 1544200 0 33557000 35472000 37772000 0 0 0 58852000 51887000 0 0 0 0 6385 91 6227 118346;118347;118348;118349;118350;118351;118352;118353;118354;118355;118356;118357;118358;118359;118360 72364;72365;72366;72367;72368;72369;72370;72371;72372;72373;72374;72375 72366 12 FNDSGIVGCLTVTPYYNRPSQEGLYQHFK Unmodified 3389.6139 0.61391071 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.255 40.556 4 4.0748E-16 18976 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.15 139.15 985290000 95338000 87151000 82196000 0 0 0 80331000 86024000 93816000 0 0 0 52962000 60222000 62983000 0 0 0 91840000 85247000 107180000 0 0 0 6386 258 6228 118361;118362;118363;118364;118365;118366;118367;118368;118369;118370;118371;118372 72376;72377;72378;72379;72380;72381;72382;72383;72384;72385;72386;72387 72386 12 FNGWELDINSR Unmodified 1349.6364 0.6364137 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.457 39.723 2 0.00011 19382 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 134.51 132.7 459790000 73005000 72234000 64839000 3506900 3494700 3227600 32117000 35408000 35285000 3579100 3737800 2491200 20064000 15985000 20915000 2666300 0 0 21753000 25797000 19688000 0 0 0 6387 546 6229 118373;118374;118375;118376;118377;118378;118379;118380;118381;118382;118383;118384;118385;118386;118387;118388;118389;118390;118391 72388;72389;72390;72391;72392;72393;72394;72395;72396;72397;72398;72399;72400;72401;72402 72391 15 FNHDAPK Unmodified 827.3926 0.3926016 1439 P36649 cueO Blue copper oxidase CueO yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 9.8061 10.636 2 0.0071588 2425 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 92.47 77.249 20918000 0 1963500 0 0 0 0 0 740890 0 0 0 0 0 0 237500 0 0 0 4651800 4894800 8429100 0 0 0 6388 1439 6230 118392;118393;118394;118395;118396;118397 72403;72404 72403 2 FNHGAQPPVQSALDGK Unmodified 1664.8271 0.82706802 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 17.851 18.479 3 5.7284E-05 6776 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 66.335 55.85 94211000 8574300 12217000 11016000 0 0 0 11668000 12394000 9358600 0 0 0 7724800 0 5943400 0 0 0 0 9490900 5822900 0 0 0 6389 88 6231 118398;118399;118400;118401;118402;118403;118404;118405;118406;118407;118408 72405;72406;72407 72405 3 FNIDADK Unmodified 821.39193 0.3919329 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 2 17.517 17.98 2 0.0011877 6477 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.44 45.703 5928000000 301750000 330030000 305290000 297100000 280260000 261210000 474150000 468560000 442090000 25685000 24650000 19708000 247310000 223880000 241390000 0 4812600 4540800 437360000 388180000 338210000 291300000 257140000 263390000 6390 939 6232 118409;118410;118411;118412;118413;118414;118415;118416;118417;118418;118419;118420;118421;118422;118423;118424;118425;118426;118427;118428;118429;118430;118431;118432;118433;118434;118435 72408;72409;72410;72411;72412;72413;72414;72415;72416;72417;72418;72419;72420;72421;72422;72423;72424;72425;72426;72427;72428 72418 21 FNIDADKVNPR Unmodified 1287.6571 0.65714914 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 7 7 6 2 2 2 3 4 3 2 2 3 2 2 2 4 2 2 6 7 8 19.976 20.137 1;2;3 1.8856E-26 6127 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 262.63 253.28 53826000000 1120400000 1038800000 1008400000 7618000000 6840000000 7093400000 1342100000 1235600000 1364200000 592150000 527040000 470400000 726150000 655140000 637730000 110170000 82481000 100690000 1336000000 1186900000 1263400000 6132900000 5886200000 5457200000 6391 939 6233 118436;118437;118438;118439;118440;118441;118442;118443;118444;118445;118446;118447;118448;118449;118450;118451;118452;118453;118454;118455;118456;118457;118458;118459;118460;118461;118462;118463;118464;118465;118466;118467;118468;118469;118470;118471;118472;118473;118474;118475;118476;118477;118478;118479;118480;118481;118482;118483;118484;118485;118486;118487;118488;118489;118490;118491;118492;118493;118494;118495;118496;118497;118498;118499;118500;118501;118502;118503;118504;118505;118506;118507;118508;118509;118510;118511;118512;118513;118514;118515;118516;118517;118518;118519 72429;72430;72431;72432;72433;72434;72435;72436;72437;72438;72439;72440;72441;72442;72443;72444;72445;72446;72447;72448;72449;72450;72451;72452;72453;72454;72455;72456;72457;72458;72459;72460;72461;72462;72463;72464;72465;72466;72467;72468;72469;72470;72471;72472;72473;72474;72475;72476;72477;72478;72479;72480;72481;72482;72483;72484;72485;72486;72487;72488;72489;72490;72491;72492;72493;72494;72495;72496;72497;72498;72499;72500;72501;72502;72503;72504;72505;72506;72507;72508;72509;72510;72511;72512;72513;72514;72515;72516 72449 85 FNIDSTQVSLTPDK Unmodified 1563.7781 0.77805214 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 36.644 35.133 2 0.0011816 16213 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 75.78 74.369 21164000 3263300 0 0 0 0 0 0 0 0 0 0 0 0 2479900 3901300 0 0 0 0 4333700 7185400 0 0 0 6392 486 6234 118520;118521;118522;118523;118524 72517 72517 0 FNIPGSK Unmodified 761.40719 0.40718903 358 P0A7M9 rpmE 50S ribosomal protein L31 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.282 21.373 2 0.0055019 6740 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 94.006 78.374 1969000000 230950000 202600000 160530000 14341000 13428000 12491000 134130000 130130000 115760000 24566000 19342000 23698000 122510000 114450000 108670000 19577000 13005000 13074000 138500000 174820000 130920000 28735000 0 22768000 6393 358 6235 118525;118526;118527;118528;118529;118530;118531;118532;118533;118534;118535;118536;118537;118538;118539;118540;118541;118542;118543;118544;118545;118546;118547;118548 72518;72519;72520;72521;72522;72523;72524;72525;72526;72527;72528;72529 72524 11 FNLEPTLPLPHQVITDGTR Unmodified 2147.1375 0.13750312 846 P0AEC3 arcB Aerobic respiration control sensor protein ArcB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.374 43.801 3 0.08084 21704 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 37.112 33.576 69655000 5801200 8108800 5613300 2217800 1398300 1623000 8894800 5648200 7030900 4644700 5550400 4432800 0 0 0 0 0 948500 7742000 0 0 0 0 0 6394 846 6236 118549;118550;118551;118552;118553;118554;118555;118556;118557;118558;118559;118560;118561;118562 72530 72530 0 FNLFNSR Unmodified 896.45045 0.45045083 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.538 31.011 2 1.2794E-05 11660 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 181.2 160.34 460170000 7340400 6653500 7594700 2852100 2231800 1708000 32503000 31125000 24280000 11590000 10432000 11206000 22404000 24019000 20035000 0 3334700 0 45900000 33791000 36566000 35392000 43220000 45993000 6395 1067 6237 118563;118564;118565;118566;118567;118568;118569;118570;118571;118572;118573;118574;118575;118576;118577;118578;118579;118580;118581;118582;118583;118584;118585 72531;72532;72533;72534;72535;72536;72537;72538;72539;72540;72541;72542;72543;72544;72545;72546;72547;72548;72549 72540 19 FNLMLETK Unmodified 994.51575 0.5157532 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 3 3 3 2 2 2 2 2 2 3 2 2 2 3 2 2 2 3 3 35.575 34.006 1;2 0.00029228 13607 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 147.52 138 11637000000 611270000 523020000 469280000 1083400000 995350000 1032800000 404310000 370400000 377010000 118080000 99983000 119060000 327200000 317590000 302390000 43105000 34352000 35114000 470150000 543710000 484830000 1008200000 901270000 965510000 6396 542 6238 118586;118587;118588;118589;118590;118591;118592;118593;118594;118595;118596;118597;118598;118599;118600;118601;118602;118603;118604;118605;118606;118607;118608;118609;118610;118611;118612;118613;118614;118615;118616;118617;118618;118619;118620;118621;118622;118623;118624;118625;118626;118627;118628;118629;118630;118631;118632;118633;118634;118635;118636;118637;118638;118639;118640;118641 72550;72551;72552;72553;72554;72555;72556;72557;72558;72559;72560;72561;72562;72563;72564;72565;72566;72567;72568;72569;72570;72571;72572;72573;72574;72575;72576;72577;72578;72579;72580;72581 72553 27 FNLMLETK Oxidation (M) 1010.5107 0.51066783 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 3 1 1 1 1 1 2 1 1 1 1 2 2 2 31.066 29.516 1;2 0.0010159 14163 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.74 101.48 455180000 21762000 19587000 16793000 34399000 28607000 49009000 25638000 21571000 22728000 485970 0 0 10615000 9591600 10389000 0 0 0 20949000 22416000 18458000 43747000 37612000 40820000 6397 542 6238 118642;118643;118644;118645;118646;118647;118648;118649;118650;118651;118652;118653;118654;118655;118656;118657;118658;118659;118660;118661;118662;118663;118664;118665;118666;118667;118668 72582;72583;72584;72585;72586;72587;72588;72589;72590;72591;72592;72593;72594;72595;72596;72597;72598 72583 326 13 FNLQDGFPLVTTK Unmodified 1478.7769 0.77692993 407 P0A884 thyA Thymidylate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.6 47.269 2 2.2435E-05 22211 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 125.74 121.72 990060000 64002000 66235000 62993000 0 0 0 72851000 63501000 66353000 0 0 0 97599000 84106000 74611000 0 0 0 118210000 112990000 106610000 0 0 0 6398 407 6239 118669;118670;118671;118672;118673;118674;118675;118676;118677;118678;118679;118680 72599;72600;72601;72602;72603;72604;72605;72606;72607;72608;72609;72610 72608 12 FNMLASIGQGAGGLLLAGHTDTVPFDDGR Unmodified 2929.4392 0.4392408 1229 P23908 argE Acetylornithine deacetylase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.351 52.943 3 1.0132E-05 26067 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 72.603 66.239 246710000 0 41132000 27734000 0 0 0 63836000 0 0 0 0 0 17938000 17939000 28340000 0 0 0 15170000 15104000 19514000 0 0 0 6399 1229 6240 118681;118682;118683;118684;118685;118686;118687;118688;118689 72611 72611 1 FNNAAIIK Unmodified 889.50215 0.50215205 209 P09169 ompT Protease 7 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 19.21 19.342 2 0.010309 5449 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 78.616 53.984 36401000 0 0 0 4149000 3986800 3659200 0 0 0 3537800 3338300 3353500 0 0 0 0 0 0 0 0 0 5122300 4152600 5101600 6400 209 6241 118690;118691;118692;118693;118694;118695;118696;118697;118698 72612;72613 72613 2 FNNFINDSLLEGAIDALKR Unmodified 2149.1168 0.11676768 1640 P61714 ribE 6,7-dimethyl-8-ribityllumazine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 54.503 53.061 2;3 1.9276E-45 25897 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 225.11 218.99 4291700000 427370000 354440000 380140000 5248000 0 0 355150000 360500000 320680000 0 0 0 336920000 276860000 270830000 0 0 0 450260000 385740000 367630000 0 0 0 6401 1640 6242 118699;118700;118701;118702;118703;118704;118705;118706;118707;118708;118709;118710;118711;118712;118713;118714;118715;118716;118717;118718;118719;118720;118721;118722;118723 72614;72615;72616;72617;72618;72619;72620;72621;72622;72623;72624;72625;72626;72627;72628 72620 15 FNNWDEVR Unmodified 1078.4832 0.48320752 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.174 23.254 2 0.00022699 10300 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 151.29 147.72 230550000 21049000 18685000 13510000 0 341930 0 23749000 21570000 22095000 0 0 0 14019000 14061000 13458000 0 0 0 21189000 22211000 23162000 0 691710 763380 6402 1966 6243 118724;118725;118726;118727;118728;118729;118730;118731;118732;118733;118734;118735;118736;118737;118738 72629;72630;72631;72632;72633;72634 72629 6 FNPEQVTVSNDNGK Unmodified 1547.7216 0.72159989 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 22.267 22.105 2 2.6986E-06 9275 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 156.01 148.63 52158000 3548300 0 3098800 0 0 0 4167600 3187600 3483500 0 0 0 4137100 4287700 4571400 0 0 0 7607900 7459500 6609100 0 0 0 6403 1148 6244 118739;118740;118741;118742;118743;118744;118745;118746;118747;118748;118749 72635;72636;72637 72635 3 FNPEVGVR Unmodified 916.47667 0.47666558 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 19.839 19.943 2 0.00083171 5754 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 121.29 112.96 90694000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35788000 25404000 26297000 3204800 0 0 0 0 0 6404 1004 6245 118750;118751;118752;118753 72638;72639 72639 2 FNPIYADHYAMR Unmodified 1496.6871 0.68706906 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 28.26 26.967 2 0.018132 12801 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 57.347 48.343 53256000 0 2740700 3238400 0 0 0 8685200 7040100 5923100 0 0 0 1694800 2263000 0 0 0 0 6291400 8804800 6574700 0 0 0 6405 1318 6246 118754;118755;118756;118757;118758;118759;118760;118761;118762;118763 72640;72641 72640 2 FNPPKVEGK Unmodified 1014.5498 0.54983053 1733 P69441 adk Adenylate kinase yes yes 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 12.989 13.871 2 0.014156 3998 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 66.457 52.461 28720000 0 0 0 0 0 0 8124100 2766400 0 0 0 0 10574000 0 7254900 0 0 0 0 0 0 0 0 0 6406 1733 6247 118764;118765;118766;118767 72642 72642 1 FNQGDYFAAVEDK Unmodified 1502.6678 0.66777341 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.768 34.211 2 6.1642E-06 16682 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 126.19 126.19 338760000 30202000 29586000 27589000 0 0 0 46712000 42478000 41981000 0 0 0 20316000 21263000 20931000 0 0 0 18173000 21630000 17900000 0 0 0 6407 709 6248 118768;118769;118770;118771;118772;118773;118774;118775;118776;118777;118778;118779 72643;72644;72645;72646;72647;72648;72649;72650;72651;72652 72644 10 FNQIGSLTETLAAIK Unmodified 1604.8774 0.87737225 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 2 2 2 2 2 3 3 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 49.602 48.279 2;3 1.9688E-08 22665 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 167.6 150.23 38292000000 2424000000 2129300000 2262800000 23310000 22058000 20151000 5477600000 5013700000 4740300000 16450000 16458000 12798000 3022700000 2614100000 2598600000 6308900 4313900 5967800 2606500000 2601000000 2655300000 5555800 6505200 6542600 6408 270 6249 118780;118781;118782;118783;118784;118785;118786;118787;118788;118789;118790;118791;118792;118793;118794;118795;118796;118797;118798;118799;118800;118801;118802;118803;118804;118805;118806;118807;118808;118809;118810;118811;118812;118813;118814;118815;118816;118817;118818;118819;118820;118821;118822;118823;118824 72653;72654;72655;72656;72657;72658;72659;72660;72661;72662;72663;72664;72665;72666;72667;72668;72669;72670;72671;72672;72673;72674;72675;72676;72677;72678;72679;72680;72681;72682;72683;72684;72685;72686;72687;72688;72689;72690;72691;72692;72693 72685 37 FNQLATEIDNTVVLCISADLPFAQSR Unmodified 2921.4593 0.45930754 400 P0A862 tpx Thiol peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 55.648 54.162 3 7.9341E-41 26940 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 208.69 206.44 813750000 119330000 120530000 0 0 0 0 67930000 71866000 69377000 0 0 0 70050000 66083000 58155000 0 0 0 85773000 84664000 0 0 0 0 6409 400 6250 118825;118826;118827;118828;118829;118830;118831;118832;118833;118834 72694;72695;72696;72697;72698;72699;72700;72701;72702 72695 9 FNREEAFTEGLDEMGWLKR Oxidation (M) 2343.0954 0.095380308 1414 P33225 torA Trimethylamine-N-oxide reductase 1 yes yes 0 1 2 By MS/MS 1 54.769 53.382 3 0.023456 21387 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 42.338 29.108 6725500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6725500 0 6410 1414 6251 118835 72703 72703 546 0 FNSLTPEQQR Unmodified 1218.5993 0.59929991 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 1 1 3 4 3 1 1 2 4 3 3 1 1 1 2 2 2 1 1 1 17.467 17.999 1;2 2.666E-13 6116 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 224.36 211.09 28377000000 937420000 870260000 917730000 11654000 10346000 10854000 5064400000 4924900000 5319700000 80443000 66066000 61883000 2061800000 1900000000 1742400000 15907000 10461000 9228300 1385300000 1444200000 1501900000 10474000 9818900 9428400 6411 1717 6252 118836;118837;118838;118839;118840;118841;118842;118843;118844;118845;118846;118847;118848;118849;118850;118851;118852;118853;118854;118855;118856;118857;118858;118859;118860;118861;118862;118863;118864;118865;118866;118867;118868;118869;118870;118871;118872;118873;118874;118875;118876;118877;118878;118879;118880;118881;118882 72704;72705;72706;72707;72708;72709;72710;72711;72712;72713;72714;72715;72716;72717;72718;72719;72720;72721;72722;72723;72724;72725;72726;72727;72728;72729;72730;72731;72732;72733;72734;72735;72736;72737;72738;72739;72740;72741;72742;72743 72736 38 FNSSLSEDGQR Unmodified 1238.5527 0.55274365 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 7 5 5 3 4 3 4 3 4 3 2 2 2 1 1 3 3 3 5 4 5 15.246 15.824 1;2;3 6.9639E-20 4178 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 243.53 226.29 21731000000 532030000 584030000 533500000 2541000000 2397500000 2479300000 863580000 800240000 706980000 285840000 261650000 263880000 420430000 367480000 357760000 79909000 49349000 56680000 786250000 772880000 855120000 1864400000 2004200000 1866900000 6412 133 6253 118883;118884;118885;118886;118887;118888;118889;118890;118891;118892;118893;118894;118895;118896;118897;118898;118899;118900;118901;118902;118903;118904;118905;118906;118907;118908;118909;118910;118911;118912;118913;118914;118915;118916;118917;118918;118919;118920;118921;118922;118923;118924;118925;118926;118927;118928;118929;118930;118931;118932;118933;118934;118935;118936;118937;118938;118939;118940;118941;118942;118943;118944;118945;118946;118947;118948;118949;118950;118951;118952;118953;118954;118955;118956;118957;118958;118959;118960;118961;118962;118963;118964 72744;72745;72746;72747;72748;72749;72750;72751;72752;72753;72754;72755;72756;72757;72758;72759;72760;72761;72762;72763;72764;72765;72766;72767;72768;72769;72770;72771;72772;72773;72774;72775;72776;72777;72778;72779;72780;72781;72782;72783;72784;72785;72786;72787;72788 72756 43 FNTILIDFDR Unmodified 1252.6452 0.64518747 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.598 47.267 2 8.229E-09 22950 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 186.41 167.63 722090000 81228000 79359000 75191000 0 0 0 40678000 33379000 36197000 0 0 0 68409000 53282000 52150000 0 0 0 73961000 63362000 64891000 0 0 0 6413 638 6254 118965;118966;118967;118968;118969;118970;118971;118972;118973;118974;118975;118976 72789;72790;72791;72792;72793;72794;72795;72796;72797;72798 72791 10 FNTLFEK Unmodified 897.45962 0.45961853 1478 P37637 mdtF Multidrug resistance protein MdtF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 27.622 26.299 2 0.037565 12409 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.313 59.774 25396000 0 2188700 2678200 0 0 0 8026400 6681700 5821500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6414 1478 6255 118977;118978;118979;118980;118981 72799;72800 72799 2 FNTPVDQLLCDGEQIYGVK Unmodified 2195.0569 0.056869537 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 54.402 52.977 2;3 9.2852E-37 25964 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 234.9 221.49 490600000 37855000 35528000 39516000 8254900 3597900 5157600 9125700 9332300 6389400 28176000 27925000 22992000 27759000 28658000 23217000 0 0 0 51119000 39139000 42912000 13890000 13935000 16117000 6415 252 6256 118982;118983;118984;118985;118986;118987;118988;118989;118990;118991;118992;118993;118994;118995;118996;118997;118998;118999;119000;119001;119002;119003;119004;119005;119006;119007;119008;119009;119010;119011;119012;119013;119014;119015;119016;119017;119018 72801;72802;72803;72804;72805 72803 5 FNVEVVAIR Unmodified 1045.592 0.59202969 532 P0A9K9 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 1 1 2 1 37.145 35.528 2 2.35E-11 14273 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 214.11 142.97 12815000000 591180000 595240000 511570000 139140000 135160000 134600000 1077700000 1060900000 1087000000 448110000 386560000 401280000 786900000 736300000 763620000 96271000 71520000 67046000 1049500000 996520000 974540000 239930000 230960000 233590000 6416 532 6257 119019;119020;119021;119022;119023;119024;119025;119026;119027;119028;119029;119030;119031;119032;119033;119034;119035;119036;119037;119038;119039;119040;119041;119042;119043;119044;119045;119046;119047 72806;72807;72808;72809;72810;72811;72812;72813;72814;72815;72816;72817;72818;72819;72820;72821;72822;72823;72824;72825;72826;72827;72828;72829;72830;72831;72832;72833;72834;72835;72836;72837;72838 72809 32 FNVFIGTDSAR Unmodified 1225.6091 0.60913632 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 36.559 35.026 2 1.74E-14 16905 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.59 146.7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6417 1421 6258 119048;119049;119050 72839;72840;72841 72839 3 FNVGLVAITDVQNAR Unmodified 1615.8682 0.86820455 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 2 1 46.845 45.366 2;3 1.7233E-11 21947 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 167.18 160.05 151850000 4681300 0 3066800 0 1893300 2577800 8192300 4572600 5457100 11174000 5925100 9562600 12588000 7242200 7176600 4174300 1387400 0 12389000 18056000 14013000 4747100 7202600 5766100 6418 73 6259 119051;119052;119053;119054;119055;119056;119057;119058;119059;119060;119061;119062;119063;119064;119065;119066;119067;119068;119069;119070;119071;119072;119073;119074;119075;119076;119077;119078 72842;72843;72844;72845;72846 72845 5 FNVLASQPADFDR Unmodified 1478.7154 0.7153923 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.031 36.531 2 5.1722E-24 17722 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 238.51 232.55 7984300000 780170000 712360000 681510000 2085300 2513800 1585400 692500000 653270000 640830000 0 1277900 0 734930000 635810000 631090000 1891800 1234900 1393000 646900000 550330000 609290000 1457700 0 1856100 6419 72 6260 119079;119080;119081;119082;119083;119084;119085;119086;119087;119088;119089;119090;119091;119092;119093;119094;119095;119096;119097;119098;119099 72847;72848;72849;72850;72851;72852;72853;72854;72855;72856;72857;72858;72859;72860 72853 14 FNVNNNIISAQMDYAGGVK Unmodified 2053.9891 0.98912432 1346 P30750 metN Methionine import ATP-binding protein MetN yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 2 2 1 1 1 1 23.785 22.879 3;4 0.16781 10211 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 8.5004 5.4025 173240000 0 4394000 0 0 0 0 41870000 49715000 43520000 0 0 0 4767900 0 0 0 0 0 15512000 7242000 6217700 0 0 0 6420 1346 6261 119100;119101;119102;119103;119104;119105;119106;119107;119108;119109;119110 72861;72862;72863;72864 72861 4 FNVPVLWDQYPHIVGWEK Unmodified 2226.1262 0.12621015 1766 P75736 ybfF Esterase YbfF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.167 51.745 3 3.4314E-07 25174 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 106.94 103.07 448480000 55005000 52920000 69617000 1721100 1203300 1159000 26931000 33049000 30742000 0 0 0 26006000 24729000 23469000 0 0 0 33666000 35346000 32913000 0 0 0 6421 1766 6262 119111;119112;119113;119114;119115;119116;119117;119118;119119;119120;119121;119122;119123;119124;119125 72865;72866;72867;72868;72869;72870;72871;72872;72873;72874;72875 72870 11 FNVPVSDADIEK Unmodified 1332.6561 0.65614609 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.489 31.079 2 8.0604E-05 14592 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 99.568 79.781 8928100000 529360000 556600000 518900000 236490000 239540000 207890000 794280000 809450000 805330000 17854000 0 0 463180000 473780000 442040000 5136300 0 0 863030000 873000000 834260000 258010000 0 0 6422 939 6263 119126;119127;119128;119129;119130;119131;119132;119133;119134;119135;119136;119137;119138;119139;119140;119141;119142;119143 72876;72877;72878;72879;72880;72881;72882;72883;72884;72885;72886;72887;72888;72889;72890;72891 72883 16 FNVPVSDADIEKLPYITFPEGSEEHTYLHAQR Unmodified 3701.8002 0.80019115 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 5 8 6 4 4 4 3 3 3 4 4 4 2 3 2 4 3 3 5 4 5 46.831 45.417 3;4;5;6 1.3524E-43 17880 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 215.92 209.74 37357000000 593880000 641570000 624780000 4908700000 4549200000 4191800000 805550000 846100000 793100000 552430000 395710000 429950000 467430000 338010000 425220000 149050000 140840000 130700000 806740000 731430000 791560000 4597700000 5032400000 4413600000 6423 939 6264 119144;119145;119146;119147;119148;119149;119150;119151;119152;119153;119154;119155;119156;119157;119158;119159;119160;119161;119162;119163;119164;119165;119166;119167;119168;119169;119170;119171;119172;119173;119174;119175;119176;119177;119178;119179;119180;119181;119182;119183;119184;119185;119186;119187;119188;119189;119190;119191;119192;119193;119194;119195;119196;119197;119198;119199;119200;119201;119202;119203;119204;119205;119206;119207;119208;119209;119210;119211;119212;119213;119214;119215;119216;119217;119218;119219;119220;119221;119222;119223;119224;119225;119226;119227;119228;119229;119230;119231;119232;119233;119234;119235;119236;119237 72892;72893;72894;72895;72896;72897;72898;72899;72900;72901;72902;72903;72904;72905;72906;72907;72908;72909;72910;72911;72912;72913;72914;72915;72916;72917;72918;72919;72920;72921;72922;72923;72924;72925;72926;72927;72928;72929;72930;72931;72932;72933;72934;72935;72936;72937;72938;72939;72940;72941;72942;72943;72944;72945;72946;72947;72948;72949;72950;72951;72952;72953;72954;72955;72956;72957;72958;72959;72960;72961;72962;72963;72964;72965;72966;72967;72968;72969;72970;72971;72972;72973;72974;72975;72976;72977;72978;72979;72980 72936 88 FNVTTSAQSIEQLSTFLNER Unmodified 2284.1335 0.13353995 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 54.346 52.868 2 0.02554 24989 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 68.919 62.038 89399000 0 0 0 0 0 0 23343000 0 21483000 0 0 0 22759000 21813000 0 0 0 0 0 0 0 0 0 0 6424 506 6265 119238;119239;119240;119241 72981;72982 72982 0 FNVWLEPEVR Unmodified 1287.6612 0.66117189 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.026 42.69 2 0.00041582 20715 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 116.52 105.37 137910000 23347000 24750000 19068000 0 0 0 0 0 0 0 0 0 19103000 0 24129000 0 0 0 0 0 27516000 0 0 0 6425 186 6266 119242;119243;119244;119245;119246;119247 72983;72984;72985;72986 72983 3 FNWETLIASR Unmodified 1235.6299 0.62987176 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 50.098 48.7 2 6.606E-09 23903 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 189.7 178.21 1455600000 127450000 111640000 121230000 0 0 380380 139950000 135420000 131440000 0 0 0 108890000 104560000 100220000 0 0 0 130600000 126590000 117180000 0 0 0 6426 128 6267 119248;119249;119250;119251;119252;119253;119254;119255;119256;119257;119258;119259;119260 72987;72988;72989;72990;72991;72992;72993;72994;72995;72996;72997;72998 72993 12 FNYGVGMMPYDADAK Oxidation (M) 1693.7116 0.71162883 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 3 4 2 3 3 4 4 3 35.486 33.884 2 5.9166E-08 15735 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 134.49 133.23 665310000 2417900 4186700 0 0 0 0 70305000 66846000 58806000 0 0 0 35612000 54900000 55253000 0 0 0 106540000 105290000 105150000 0 0 0 6427 993 6268 119261;119262;119263;119264;119265;119266;119267;119268;119269;119270;119271;119272;119273;119274;119275;119276;119277;119278;119279;119280;119281;119282;119283;119284;119285;119286;119287;119288;119289;119290;119291;119292 72999;73000;73001;73002;73003;73004;73005;73006;73007;73008;73009;73010;73011;73012;73013;73014;73015;73016;73017;73018;73019;73020;73021;73022;73023 73006 454;455 22 FNYGVGMMPYDADAK Unmodified 1677.7167 0.71671421 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 1 1 2 2 2 40.565 39.039 2;3 1.304E-08 19389 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 145.14 145.14 13995000000 137740000 126510000 123850000 0 0 0 949320000 927930000 983910000 0 0 0 1332200000 1257000000 1197800000 0 1196200 1194100 2452100000 2277800000 2226600000 0 0 0 6428 993 6268 119293;119294;119295;119296;119297;119298;119299;119300;119301;119302;119303;119304;119305;119306;119307;119308;119309;119310;119311;119312;119313;119314;119315;119316;119317 73024;73025;73026;73027;73028;73029;73030;73031;73032;73033;73034;73035;73036;73037;73038;73039;73040;73041;73042;73043;73044;73045;73046;73047 73024 24 FPAIIYGGK Unmodified 964.5382 0.53820321 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 34.479 33.011 1;2 0.0010585 16194 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.262 80.924 2861800000 417940000 385190000 330080000 1514700 1403500 1646700 135750000 133930000 127720000 2844600 3346600 3088100 173460000 183360000 151510000 3488000 1515800 2141500 252830000 274410000 263030000 4337600 3410800 3826200 6429 1726 6269 119318;119319;119320;119321;119322;119323;119324;119325;119326;119327;119328;119329;119330;119331;119332;119333;119334;119335;119336;119337;119338;119339;119340;119341;119342;119343;119344;119345;119346;119347;119348;119349;119350;119351;119352;119353 73048;73049;73050;73051;73052;73053;73054;73055;73056;73057;73058;73059;73060;73061;73062;73063;73064;73065;73066;73067;73068;73069;73070;73071 73052 18 FPATENAANTVAHAR Unmodified 1568.7696 0.76955314 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 2 2 2 1 1 1 1 2 2 1 2 2 2 2 2 1 17.592 18.128 2;3 5.0758E-46 6765 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 289.22 275.87 3192900000 548860000 532710000 516440000 14738000 14750000 16106000 20763000 240700000 240100000 1766400 1645500 1692700 16932000 176060000 172310000 816250 0 0 217300000 247090000 187530000 10722000 11369000 2502900 6430 639 6270 119354;119355;119356;119357;119358;119359;119360;119361;119362;119363;119364;119365;119366;119367;119368;119369;119370;119371;119372;119373;119374;119375;119376;119377;119378;119379;119380;119381;119382;119383;119384;119385;119386;119387;119388;119389;119390 73072;73073;73074;73075;73076;73077;73078;73079;73080;73081;73082;73083;73084;73085;73086;73087;73088;73089;73090;73091;73092;73093;73094;73095 73075 22 FPEDLDGDGR Unmodified 1119.4833 0.4832671 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 24.362 23.396 2 4.4687E-05 10082 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.4 117.88 267800000 0 0 0 0 0 0 27369000 26107000 23471000 0 0 0 27213000 30628000 29516000 0 0 0 34632000 34610000 34259000 0 0 0 6431 1324 6271 119391;119392;119393;119394;119395;119396;119397;119398;119399 73096;73097;73098;73099;73100;73101;73102;73103;73104 73101 9 FPEDLDGDGRR Unmodified 1275.5844 0.58437813 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 1 1 1 17.537 18.105 2;3 2.4372E-26 6484 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 255.84 238.37 855570000 0 0 0 0 0 0 85606000 92714000 82118000 0 431750 0 86153000 80082000 76243000 0 0 0 117540000 112270000 119910000 688160 1142500 669100 6432 1324 6272 119400;119401;119402;119403;119404;119405;119406;119407;119408;119409;119410;119411;119412;119413;119414;119415;119416;119417;119418;119419;119420;119421 73105;73106;73107;73108;73109;73110;73111;73112;73113;73114;73115;73116;73117;73118;73119;73120;73121;73122;73123;73124;73125;73126;73127;73128;73129 73119 25 FPEGTSEEQIDK Unmodified 1378.6252 0.62523989 1506 P38521 yggL Uncharacterized protein YggL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.406 19.913 2 8.1071E-17 7679 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 209.85 190.53 122260000 21472000 19419000 21586000 0 0 0 6774400 7298600 5859800 0 0 0 6296100 5813800 6436600 0 0 0 7329200 7929500 6041400 0 0 0 6433 1506 6273 119422;119423;119424;119425;119426;119427;119428;119429;119430;119431;119432;119433 73130;73131;73132;73133;73134;73135;73136;73137;73138;73139;73140;73141;73142 73140 13 FPEHCGIGIK Unmodified 1156.5699 0.56991404 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 1 1 1 2 2 2 17.942 18.557 2;3 0.077276 6890 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 35.652 21.445 138780000 19941000 25299000 20006000 0 0 0 6387200 5874100 6990700 0 0 0 5650000 4801300 4265300 0 0 0 12901000 14032000 12631000 0 0 0 6434 179 6274 119434;119435;119436;119437;119438;119439;119440;119441;119442;119443;119444;119445;119446;119447;119448;119449;119450;119451;119452 73143;73144 73144 1 FPEHCGIGIKPCSEEGTK Unmodified 2044.9346 0.93464591 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 16.991 17.742 2;3;4 7.4011E-55 6246 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 274.09 242.03 2558800000 369340000 326600000 318500000 0 0 0 162140000 150980000 142710000 0 0 0 114920000 116730000 115720000 0 0 0 277340000 238020000 225770000 0 0 0 6435 179 6275 119453;119454;119455;119456;119457;119458;119459;119460;119461;119462;119463;119464;119465;119466;119467;119468;119469;119470;119471;119472;119473;119474;119475;119476;119477;119478;119479;119480;119481;119482;119483;119484;119485;119486;119487;119488 73145;73146;73147;73148;73149;73150;73151;73152;73153;73154;73155;73156;73157;73158;73159;73160;73161;73162;73163;73164;73165;73166;73167;73168;73169;73170;73171;73172;73173;73174;73175;73176;73177;73178;73179;73180;73181;73182;73183;73184;73185;73186;73187;73188;73189;73190;73191;73192;73193;73194;73195;73196;73197;73198;73199;73200;73201;73202;73203;73204 73185 60 FPEHCGIGIKPCSEEGTKR Unmodified 2201.0358 0.035756939 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 3 4 3 4 3 3 3 3 3 14.181 15 2;3;4;5 1.0079E-21 5035 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 220.14 214.66 3179900000 447280000 403180000 437630000 0 0 0 137690000 169950000 148140000 0 0 0 183880000 191230000 202170000 0 0 0 291770000 267200000 299750000 0 0 0 6436 179 6276 119489;119490;119491;119492;119493;119494;119495;119496;119497;119498;119499;119500;119501;119502;119503;119504;119505;119506;119507;119508;119509;119510;119511;119512;119513;119514;119515;119516;119517;119518;119519;119520;119521;119522;119523;119524;119525;119526;119527;119528;119529 73205;73206;73207;73208;73209;73210;73211;73212;73213;73214;73215;73216;73217;73218;73219;73220;73221;73222;73223;73224;73225;73226;73227;73228;73229;73230;73231;73232;73233;73234;73235;73236;73237;73238;73239;73240;73241;73242;73243;73244 73228 40 FPEVPLFGR Unmodified 1060.5706 0.57056597 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.544 46.025 2 2.1331E-05 22296 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.4 133.47 307940000 20676000 21163000 20502000 0 0 0 22473000 22181000 20758000 4908900 0 3337300 19586000 23406000 22148000 0 0 0 32633000 35852000 30093000 2873800 2828400 2523200 6437 1197 6277 119530;119531;119532;119533;119534;119535;119536;119537;119538;119539;119540;119541;119542;119543;119544;119545;119546;119547 73245;73246;73247;73248;73249;73250;73251;73252;73253;73254;73255;73256;73257;73258;73259;73260 73256 16 FPEWLPLDK Unmodified 1143.5964 0.59644637 262 P0A6M2 dsbB Disulfide bond formation protein B yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.943 47.598 2 0.0067782 22342 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 69.716 66.72 55012000 3705000 0 2406700 0 0 0 4698800 6062900 4612300 0 0 0 5452300 6087600 4531000 0 0 0 5654100 5264700 6536200 0 0 0 6438 262 6278 119548;119549;119550;119551;119552;119553;119554;119555;119556;119557;119558 73261;73262 73261 2 FPFLLVDR Unmodified 1005.5648 0.56475231 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.488 48.122 2 6.787E-05 23534 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 139.31 119.68 293340000 0 19924000 16669000 0 0 0 24471000 23705000 20144000 0 0 0 29456000 24002000 26738000 0 0 0 37267000 37698000 33265000 0 0 0 6439 272 6279 119559;119560;119561;119562;119563;119564;119565;119566;119567;119568;119569;119570 73263;73264;73265;73266;73267;73268;73269;73270;73271;73272;73273;73274 73269 12 FPGVDPLLGPEMR Unmodified 1426.7279 0.72787125 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 47.725 46.423 2 6.9725E-09 21883 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 166.55 163.25 779290000 181780000 166670000 157550000 0 0 0 0 0 0 0 0 0 21488000 18991000 17086000 0 0 0 66527000 77744000 71450000 0 0 0 6440 65 6280 119571;119572;119573;119574;119575;119576;119577;119578;119579 73275;73276;73277;73278;73279;73280;73281;73282 73280 8 FPHCFSAEGEAR Unmodified 1406.6037 0.60373336 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.216 18.832 3 1.3732E-05 7008 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 115.04 115.04 426950000 29780000 24198000 21404000 0 0 0 42815000 42977000 37115000 0 0 0 32787000 36967000 35673000 0 0 0 38007000 41880000 43344000 0 0 0 6441 1576 6281 119580;119581;119582;119583;119584;119585;119586;119587;119588;119589;119590;119591 73283;73284;73285;73286;73287 73286 5 FPHCFSAEGEARPLK Unmodified 1744.8355 0.83552421 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 1 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 19.839 20.086 3;4 1.1726E-06 6616 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 109.79 108.54 429640000 23962000 21229000 20958000 0 1068800 1429300 20299000 7875800 18198000 39028000 33688000 32257000 14536000 18476000 25589000 6966300 16698000 11913000 25503000 32233000 22432000 13955000 11223000 10127000 6442 1576 6282 119592;119593;119594;119595;119596;119597;119598;119599;119600;119601;119602;119603;119604;119605;119606;119607;119608;119609;119610;119611;119612;119613;119614;119615;119616;119617;119618;119619;119620;119621;119622;119623;119624;119625;119626;119627;119628;119629;119630;119631 73288;73289;73290;73291;73292;73293;73294;73295;73296;73297;73298;73299;73300;73301;73302;73303;73304;73305 73291 18 FPHPPLMPVYPVAR Unmodified 1619.8646 0.8646395 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 40.39 39.001 2;3 3.8725E-11 18785 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.25 162.59 4437200000 340440000 345360000 321320000 0 0 518190 328470000 321940000 310140000 0 0 1345300 330010000 308110000 297330000 239470000 149580000 151220000 331320000 339890000 316230000 0 1539500 2948500 6443 712 6283 119632;119633;119634;119635;119636;119637;119638;119639;119640;119641;119642;119643;119644;119645;119646;119647;119648;119649;119650;119651;119652;119653;119654;119655;119656;119657;119658;119659;119660;119661;119662;119663;119664;119665 73306;73307;73308;73309;73310;73311;73312;73313;73314;73315;73316;73317;73318;73319;73320;73321;73322;73323;73324;73325;73326;73327;73328;73329;73330;73331;73332;73333;73334;73335;73336;73337;73338;73339;73340;73341;73342;73343;73344 73335 37 FPLAGVHGAER Unmodified 1152.604 0.60399136 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 2 2 2 1 1 1 1 2 2 1 1 1 18.379 18.863 2;3 0.00072072 6925 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 85.862 69.086 292920000 49425000 54359000 16948000 295910 0 0 40725000 42360000 29754000 2699200 2687800 2223300 7524100 9104300 8446400 0 0 0 11973000 10955000 3436200 0 0 0 6444 1377 6284 119666;119667;119668;119669;119670;119671;119672;119673;119674;119675;119676;119677;119678;119679;119680;119681;119682;119683;119684;119685;119686;119687;119688 73345;73346;73347;73348;73349;73350;73351 73349 7 FPLAYNDLFK Unmodified 1226.6336 0.63356015 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.911 47.646 2 0.00022475 23239 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 93.649 74.555 43809000 9809800 10853000 11339000 0 0 0 0 0 0 0 0 0 5001200 0 0 0 0 0 6807000 0 0 0 0 0 6445 1006 6285 119689;119690;119691;119692;119693;119694 73352;73353;73354;73355;73356;73357 73353 6 FPLHEMRDDVAFQIINDELYLDGNAR Unmodified 3090.4869 0.48691928 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 1 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 52.728 51.375 4 0.10029 25376 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 34.715 32.084 39559000 4774000 0 3631100 0 0 0 12095000 9951600 9107400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6446 1755;1756 6286 119695;119696;119697;119698;119699 73358;73359 73358 0 FPLLSANIYQK Unmodified 1292.7129 0.71287311 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 42.094 40.309 2 0.00024445 19760 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.4 119.12 160760000 32449000 35825000 31251000 0 0 0 32397000 0 28836000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6447 154 6287 119700;119701;119702;119703;119704 73360;73361 73360 0 FPLPVEVIPMAR Unmodified 1367.7635 0.76352847 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 53.377 51.945 2;3 3.0506E-06 25316 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 152.34 150.53 3233800000 339980000 337330000 315420000 0 868450 858060 236960000 237660000 230930000 0 0 0 256270000 259880000 256100000 0 0 0 209130000 269520000 282920000 0 0 0 6448 382 6288 119705;119706;119707;119708;119709;119710;119711;119712;119713;119714;119715;119716;119717;119718;119719;119720;119721;119722;119723;119724;119725;119726;119727;119728;119729;119730 73362;73363;73364;73365;73366;73367;73368;73369;73370;73371;73372;73373;73374;73375;73376 73372 15 FPLPVEVIPMAR Oxidation (M) 1383.7584 0.75844309 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 50.005 48.596 2 0.0004526 23452 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 76.679 74.52 117430000 11367000 11271000 11479000 0 0 0 16435000 16074000 0 0 0 0 9380800 8109600 0 0 0 0 12204000 12272000 8833700 0 0 0 6449 382 6288 119731;119732;119733;119734;119735;119736;119737;119738;119739;119740 73377;73378;73379;73380;73381;73382;73383 73382 164 0 FPNDVDPIETR Unmodified 1301.6252 0.62518031 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 1 1 1 1 2 1 1 2 3 3 2 3 2 2 30.81 29.277 2;3 1.6886E-10 13418 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 163.65 133.84 3263000000 0 0 0 389170000 375670000 429440000 0 531470000 0 41295000 41276000 34245000 0 2352200 0 9020700 4707900 1567400 2981800 2493600 0 493760000 442880000 460700000 6450 939 6289 119741;119742;119743;119744;119745;119746;119747;119748;119749;119750;119751;119752;119753;119754;119755;119756;119757;119758;119759;119760;119761;119762;119763;119764;119765;119766;119767;119768;119769;119770;119771;119772;119773;119774;119775;119776;119777;119778;119779;119780;119781;119782;119783;119784;119785;119786 73384;73385;73386;73387;73388;73389;73390;73391;73392;73393;73394;73395;73396;73397;73398;73399;73400;73401;73402;73403;73404;73405;73406;73407;73408;73409;73410;73411;73412;73413;73414;73415;73416;73417;73418;73419;73420;73421;73422;73423;73424;73425;73426;73427;73428;73429;73430;73431;73432;73433;73434 73429 51 FPNVYGIDMPSATELIAHGR Unmodified 2187.0783 0.078273681 978 P0AG16 purF Amidophosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.82 48.414 3 1.9268E-08 23748 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.62 110 444050000 89184000 78828000 75192000 0 0 0 15983000 14276000 17298000 0 0 0 19616000 26200000 17306000 0 0 0 28905000 30852000 30408000 0 0 0 6451 978 6290 119787;119788;119789;119790;119791;119792;119793;119794;119795;119796;119797;119798 73435;73436;73437;73438;73439;73440;73441;73442;73443;73444;73445;73446 73441 12 FPQIVVYGPQETQDK Unmodified 1747.8781 0.87810054 708 P0AC84 gloB Hydroxyacylglutathione hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 2 39.409 37.736 2;3 9.8527E-12 18387 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 210.79 202.28 427320000 74030000 70592000 59286000 0 0 0 40837000 38523000 35137000 0 0 0 14613000 14324000 12511000 0 0 0 20486000 22649000 24333000 0 0 0 6452 708 6291 119799;119800;119801;119802;119803;119804;119805;119806;119807;119808;119809;119810;119811;119812;119813;119814;119815;119816;119817;119818;119819;119820 73447;73448;73449;73450;73451;73452;73453;73454 73448 8 FPQTELFR Unmodified 1036.5342 0.53418046 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.029 32.58 2 0.0003704 15537 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143 124.27 220650000 18734000 19207000 17595000 0 0 0 21047000 21409000 20383000 0 0 0 14869000 14772000 15253000 0 0 0 16732000 21651000 18996000 0 0 0 6453 1132 6292 119821;119822;119823;119824;119825;119826;119827;119828;119829;119830;119831;119832 73455;73456 73455 2 FPQVAATGDGPDIIFWAHDR Unmodified 2212.0702 0.070151836 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 3 3 3 2 2 2 1 1 49.526 48.163 2;3 3.7693E-68 23332 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 364.06 344.38 9495500000 193380000 174790000 163230000 947140 0 0 892450000 849860000 811890000 0 0 0 987310000 838350000 919340000 0 0 0 1218400000 1291700000 1147600000 2569400 3599300 0 6454 895 6293 119833;119834;119835;119836;119837;119838;119839;119840;119841;119842;119843;119844;119845;119846;119847;119848;119849;119850;119851;119852;119853;119854;119855;119856;119857;119858;119859;119860;119861;119862 73457;73458;73459;73460;73461;73462;73463;73464;73465;73466;73467;73468;73469;73470;73471;73472;73473;73474;73475;73476;73477;73478;73479;73480;73481;73482;73483 73467 27 FPTLSLPNTEWNSER Unmodified 1789.8635 0.8635131 1927 P77690 arnB UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 48.095 46.301 2 0.00016822 18889 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 103.91 92.043 29478000 2942900 0 0 0 0 0 4548300 5898100 7339500 2426900 3722600 2600100 0 0 0 0 0 0 0 0 0 0 0 0 6455 1927 6294 119863;119864;119865;119866;119867;119868;119869 73484 73484 1 FPVISEDKDHIEGILMAK Unmodified 2041.0554 0.055412974 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 1 2 2 2 39.991 38.35 3;4 1.6077E-17 17875 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 168.32 164.77 1732500000 183250000 187230000 188080000 5419100 7398700 5497500 160040000 138570000 162640000 0 1175400 0 100850000 90095000 88399000 0 0 1470600 128130000 156460000 127770000 0 0 0 6456 839 6295 119870;119871;119872;119873;119874;119875;119876;119877;119878;119879;119880;119881;119882;119883;119884;119885;119886;119887;119888;119889;119890;119891;119892;119893;119894;119895;119896;119897;119898 73485;73486;73487;73488;73489;73490;73491;73492;73493;73494;73495;73496;73497;73498;73499;73500;73501;73502;73503;73504 73501 20 FPVQYVNRPNLDFR Unmodified 1763.9107 0.91073807 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 35.692 34.143 2;3 1.2057E-07 16450 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.1 164.41 1428700000 88278000 103610000 84729000 3038000 2177300 2795800 102030000 107070000 99654000 4822200 4339600 2731600 84701000 79459000 88136000 3620200 2807100 2014000 177090000 195590000 176840000 4794400 4505100 3923300 6457 1218 6296 119899;119900;119901;119902;119903;119904;119905;119906;119907;119908;119909;119910;119911;119912;119913;119914;119915;119916;119917;119918;119919;119920;119921;119922;119923;119924;119925;119926;119927;119928;119929;119930;119931;119932;119933;119934;119935 73505;73506;73507;73508;73509;73510;73511;73512;73513;73514;73515;73516;73517;73518;73519;73520;73521;73522;73523;73524;73525;73526;73527;73528 73512 24 FPVSQSIDELMEACR Unmodified 1780.8124 0.81240551 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.894 47.554 2 1.8964E-45 23260 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 275.95 267.65 387980000 66337000 67387000 62571000 0 0 0 24179000 23080000 28125000 0 0 0 16689000 16136000 15367000 0 0 0 23870000 22460000 21779000 0 0 0 6458 636 6297 119936;119937;119938;119939;119940;119941;119942;119943;119944;119945;119946;119947 73529;73530;73531;73532;73533;73534;73535;73536;73537;73538;73539;73540 73535 12 FPWDDGMK Unmodified 994.42185 0.42185282 667 P0ABK9 nrfA Cytochrome c-552 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 37.335 35.583 2 0.0813 16445 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 53.166 42.982 44905000 0 0 0 0 0 0 5181000 4655300 4984900 0 0 0 4097800 5034100 5735200 0 0 0 5794000 4699700 4723100 0 0 0 6459 667 6298 119948;119949;119950;119951;119952;119953;119954;119955;119956 73541;73542 73542 2 FPWNFDMR Unmodified 1111.4909 0.49093544 1626 P60651 speB Agmatinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.973 46.581 2 9.412E-05 22754 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 162.31 157.62 330020000 23978000 20750000 19907000 0 0 0 18437000 20282000 21275000 0 0 0 30162000 26475000 27645000 0 0 0 39577000 45433000 36099000 0 0 0 6460 1626 6299 119957;119958;119959;119960;119961;119962;119963;119964;119965;119966;119967;119968 73543;73544;73545;73546;73547;73548;73549;73550;73551;73552 73546 10 FPYNTPTSK Unmodified 1053.5131 0.51311067 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 18.007 18.615 2 0.0020066 6541 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 91.516 47.096 315280000 0 21743000 0 0 0 0 88289000 73772000 94059000 0 0 0 5824700 4948000 4355800 0 0 0 7532500 7232300 7521000 0 0 0 6461 1191 6300 119969;119970;119971;119972;119973;119974;119975;119976;119977;119978 73553;73554;73555;73556 73556 1 FPYVNANVIDAR Unmodified 1377.7041 0.70409934 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.874 37.2 2 4.3273E-08 18066 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 157.66 149.44 297690000 41277000 32671000 34920000 0 0 0 27503000 26762000 26743000 0 0 0 18370000 18396000 15851000 0 0 0 18047000 17645000 19505000 0 0 0 6462 184 6301 119979;119980;119981;119982;119983;119984;119985;119986;119987;119988;119989;119990 73557;73558;73559;73560;73561;73562 73559 6 FQAAMLAADDDR Unmodified 1322.5925 0.59249998 309 P0A744 msrA Peptide methionine sulfoxide reductase MsrA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.038 27.542 2 4.5935E-12 12663 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 196.06 167.88 605980000 78438000 91611000 78618000 1538200 1772800 1830800 50117000 52450000 52752000 6475900 5242000 4851300 30459000 29314000 28967000 0 0 0 27394000 28242000 31100000 1857100 1745200 1205400 6463 309 6302 119991;119992;119993;119994;119995;119996;119997;119998;119999;120000;120001;120002;120003;120004;120005;120006;120007;120008;120009;120010;120011 73563;73564;73565;73566;73567;73568;73569;73570;73571;73572;73573;73574;73575;73576;73577;73578;73579 73575 15 FQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK Unmodified 4308.9811 0.98108542 309 P0A744 msrA Peptide methionine sulfoxide reductase MsrA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 1 2 1 2 43.362 41.28 5;6 2.3044E-07 16851 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 69.644 69.641 281510000 0 0 0 24958000 30574000 21472000 0 3501600 0 61764000 52512000 34076000 0 0 0 0 0 0 0 0 0 20172000 10544000 21938000 6464 309 6303 120012;120013;120014;120015;120016;120017;120018;120019;120020;120021;120022;120023;120024;120025;120026;120027;120028 73580;73581;73582;73583;73584;73585;73586 73580 7 FQADTLAR Unmodified 920.47158 0.4715802 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.002 18.513 2 0.0038108 6834 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 89.296 65.323 214580000 18904000 19734000 15947000 0 611140 570850 63481000 63625000 5928100 0 0 0 0 9881900 9205900 0 1501500 1661800 0 3524800 0 0 0 0 6465 1355 6304 120029;120030;120031;120032;120033;120034;120035;120036;120037;120038;120039;120040;120041 73587;73588;73589;73590 73588 3 FQAMAAEGVK Unmodified 1050.5168 0.51681584 533 P0A9L3 fklB FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.134 19.55 2 0.00034748 6970 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 108.98 102.52 2742300000 166480000 167630000 131780000 6548500 6033900 5253100 281360000 276600000 249460000 4766800 5000100 4953700 215910000 179390000 184870000 0 0 0 288470000 287880000 275190000 0 0 4713000 6466 533 6305 120042;120043;120044;120045;120046;120047;120048;120049;120050;120051;120052;120053;120054;120055;120056;120057;120058;120059;120060 73591;73592;73593;73594;73595;73596;73597;73598;73599;73600;73601;73602 73602 4 FQASLRD Unmodified 835.41882 0.41881635 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.584 17.2 2 0.0035116 5682 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.63 69.713 1659500000 195600000 169810000 164050000 0 1615500 1361400 152160000 139520000 127730000 0 0 0 0 167430000 142270000 1312200 906460 1281200 209110000 0 185330000 0 0 0 6467 161 6306 120061;120062;120063;120064;120065;120066;120067;120068;120069;120070;120071;120072;120073;120074;120075;120076 73603;73604;73605;73606;73607;73608;73609;73610;73611;73612;73613 73613 11 FQAYITGMQPMLK Unmodified 1526.7625 0.76254219 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 42.821 41.186 2 1.4393E-05 14571 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 112.36 105.21 33962000 0 0 0 11394000 11688000 10880000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6468 114 6307 120077;120078;120079 73614;73615;73616 73615 3 FQDDILAGR Unmodified 1033.5193 0.51925868 1713 P67603 yqfB UPF0267 protein YqfB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 28.908 27.683 2 1.2092E-05 13162 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.9 135.38 952720000 127910000 105820000 96896000 0 0 0 83787000 79944000 0 0 0 0 76596000 68335000 64361000 0 0 0 85504000 84895000 78675000 0 0 0 6469 1713 6308 120080;120081;120082;120083;120084;120085;120086;120087;120088;120089;120090 73617;73618;73619;73620;73621;73622;73623;73624;73625;73626;73627 73617 11 FQDEEVQR Unmodified 1049.4778 0.47778779 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.919 13.397 2 4.7538E-12 3985 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 179.73 172.97 2273700000 0 807590000 0 0 0 0 0 0 0 243440000 245590000 0 977110000 0 0 0 0 0 0 0 0 0 0 0 6470 293 6309 120091;120092;120093;120094;120095;120096;120097;120098;120099;120100 73628;73629;73630;73631;73632;73633;73634;73635 73633 8 FQDEVGGK Unmodified 878.4134 0.41339662 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.544 13.121 2 0.00073819 2819 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 125.25 115.11 763910000 29864000 30910000 28275000 17464000 20801000 21015000 0 0 0 31458000 26850000 28488000 0 70038000 63127000 6506300 5984200 5446200 96234000 109830000 94064000 23056000 25537000 28959000 6471 1427 6310 120101;120102;120103;120104;120105;120106;120107;120108;120109;120110;120111;120112;120113;120114;120115;120116;120117;120118;120119;120120 73636;73637;73638;73639;73640;73641;73642;73643;73644;73645;73646 73643 11 FQDGTDFNAAAVK Unmodified 1382.6466 0.64664404 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.709 24.63 2 1.5174E-05 10598 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 135.86 134.66 467910000 56605000 45175000 42079000 0 1422200 0 41980000 44079000 37038000 0 0 0 30938000 29701000 25069000 0 0 0 37546000 38565000 37711000 0 0 0 6472 1774 6311 120121;120122;120123;120124;120125;120126;120127;120128;120129;120130;120131;120132;120133 73647;73648;73649;73650;73651;73652;73653;73654;73655;73656;73657;73658 73657 12 FQDVGSFDYGR Unmodified 1289.5677 0.56766543 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 31.109 29.725 2 2.2134E-14 11049 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 214.93 212.53 1683300000 110550000 94723000 96439000 36400000 39921000 34822000 71776000 60305000 61679000 101380000 114450000 122780000 68012000 71192000 59289000 50860000 32799000 33678000 86672000 83599000 77434000 57900000 58561000 58124000 6473 144 6312 120134;120135;120136;120137;120138;120139;120140;120141;120142;120143;120144;120145;120146;120147;120148;120149;120150;120151;120152;120153;120154;120155;120156;120157;120158 73659;73660;73661;73662;73663;73664;73665;73666;73667;73668;73669;73670;73671;73672;73673;73674;73675;73676;73677;73678;73679;73680;73681 73666 23 FQEQVNAK Unmodified 962.48214 0.48214489 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.005 12.765 2 0.00020378 3344 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 152.63 124.93 3083000000 227920000 216620000 208580000 1288600 1502100 0 501190000 499670000 396110000 0 0 0 210640000 181600000 151030000 919670 0 1017400 168080000 156160000 160700000 0 0 0 6474 449 6313 120159;120160;120161;120162;120163;120164;120165;120166;120167;120168;120169;120170;120171;120172;120173;120174 73682;73683;73684;73685;73686;73687 73686 5 FQIVSESPR Unmodified 1061.5506 0.55055881 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.666 22.927 2 0.00069069 10192 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 103.74 66.181 348920000 37655000 35015000 32124000 0 0 0 17586000 21067000 20327000 0 0 0 21695000 26990000 19560000 0 0 0 36561000 37249000 43094000 0 0 0 6475 177 6314 120175;120176;120177;120178;120179;120180;120181;120182;120183;120184;120185;120186 73688;73689;73690;73691;73692;73693;73694;73695;73696 73690 7 FQKLGGK Unmodified 776.45447 0.45447358 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 14.685 14.949 2 0.15261 3398 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 56.026 33.404 30293000 0 0 0 8077900 0 0 0 0 0 0 0 546730 0 0 0 0 3554400 2630600 0 0 0 5518300 4682500 5282900 6476 595 6315 120187;120188;120189;120190;120191;120192;120193 73697 73697 1 FQLADFAPR Unmodified 1063.5451 0.5450795 1536 P39401 mdoB Phosphoglycerol transferase I yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 42.046 39.912 2 0.028573 19752 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 60.436 51.222 28519000 0 0 0 0 480240 0 0 0 6167900 1703800 1789500 1749700 0 11112000 0 0 0 0 0 0 0 1843500 1810400 1862400 6477 1536 6316 120194;120195;120196;120197;120198;120199;120200;120201;120202;120203 73698;73699 73699 2 FQLAENIHVR Unmodified 1225.6568 0.65675521 1033 P0C054 ibpA Small heat shock protein IbpA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.715 24.611 3 0.00024945 9364 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 78.939 75.99 96060000 0 4078800 0 3634000 2901500 2938500 6931700 8470900 6708700 9627100 9975600 8474300 4966700 0 3253400 1385400 1507600 1652600 8199600 6880300 0 0 4473200 0 6478 1033 6317 120204;120205;120206;120207;120208;120209;120210;120211;120212;120213;120214;120215;120216;120217;120218;120219;120220;120221;120222 73700;73701;73702;73703;73704;73705;73706;73707 73700 8 FQLLRPQINR Unmodified 1283.7462 0.74623892 1562 P43337 nudL Uncharacterized Nudix hydrolase NudL yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.295 26.037 3 0.00075527 11823 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.948 81.251 49591000 11784000 10553000 11844000 996610 0 989230 4358300 3095900 3689000 0 0 0 0 0 0 0 0 0 0 0 2280700 0 0 0 6479 1562 6318 120223;120224;120225;120226;120227;120228;120229;120230;120231 73708 73708 1 FQLTPVDVITAIK Unmodified 1443.8337 0.83371653 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.351 52.112 2 1.7088E-05 25277 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 110.84 108.9 531870000 19258000 20617000 14841000 6589100 7812400 7691800 37516000 37328000 36941000 21489000 20218000 19495000 35305000 32014000 33868000 7686800 5376100 6502700 37429000 42735000 42782000 13996000 12188000 12197000 6480 1365 6319 120232;120233;120234;120235;120236;120237;120238;120239;120240;120241;120242;120243;120244;120245;120246;120247;120248;120249;120250;120251;120252;120253;120254;120255 73709;73710;73711;73712;73713;73714;73715;73716;73717;73718;73719;73720;73721;73722;73723;73724;73725;73726;73727;73728;73729;73730;73731;73732 73723 24 FQNALLVR Unmodified 959.55525 0.55525025 9 CON__P02768-1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 27.939 26.674 2 0.0062058 10259 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 85.359 69.727 293910000 0 74286000 57905000 0 0 0 0 0 0 3578000 0 2708500 55132000 51137000 49160000 0 0 0 0 0 0 0 0 0 + 6481 9 6320 120256;120257;120258;120259;120260;120261;120262 73733 73733 1 FQPQDGK Unmodified 818.39227 0.39226725 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.967 11.598 2 0.011343 2671 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 85.89 71.904 777620000 32565000 22731000 0 12277000 12862000 11769000 71519000 58979000 68675000 17607000 0 11658000 51643000 47393000 48971000 0 4861500 6310700 96176000 83137000 85729000 9610500 11555000 11588000 6482 1427 6321 120263;120264;120265;120266;120267;120268;120269;120270;120271;120272;120273;120274;120275;120276;120277;120278;120279;120280;120281;120282;120283 73734;73735;73736;73737;73738;73739 73739 5 FQQAGHKPVALVGGATGLIGDPSFK Unmodified 2494.3332 0.33324281 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 1 3 3 3 3 3 3 34.34 32.868 2;3;4 4.2729E-30 15595 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 217.91 215.58 5243800000 442160000 435730000 427740000 2578400 0 0 386270000 484420000 397140000 0 0 1778200 358790000 438610000 401330000 0 0 0 478640000 475630000 513010000 0 0 0 6483 1024 6322 120284;120285;120286;120287;120288;120289;120290;120291;120292;120293;120294;120295;120296;120297;120298;120299;120300;120301;120302;120303;120304;120305;120306;120307;120308;120309;120310;120311;120312;120313;120314;120315;120316;120317;120318;120319;120320;120321 73740;73741;73742;73743;73744;73745;73746;73747;73748;73749;73750;73751;73752;73753;73754;73755;73756;73757;73758;73759;73760;73761;73762;73763;73764;73765;73766 73758 27 FQQLLGDGSQWGLNLQYK Unmodified 2094.0534 0.053439139 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.201 49.945 2;3 7.663E-45 24585 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 309.66 304.29 1204700000 71968000 65728000 60854000 0 0 0 90371000 88842000 87804000 0 0 0 113490000 97735000 101490000 0 0 0 151460000 146050000 128910000 0 0 0 6484 1489 6323 120322;120323;120324;120325;120326;120327;120328;120329;120330;120331;120332;120333;120334;120335;120336;120337;120338;120339;120340;120341;120342;120343;120344;120345 73767;73768;73769;73770;73771;73772;73773;73774;73775;73776;73777;73778;73779;73780;73781;73782 73769 16 FQQNFALVLPDWQVGVK Unmodified 1988.052 0.051982576 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 2 2 2 2 1 2 54.476 53.029 2;3 6.2192E-11 25896 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 195.77 185.7 442110000 19019000 24139000 17066000 0 0 0 32899000 22679000 32934000 0 0 0 45520000 42498000 39641000 0 0 0 71741000 39644000 54330000 0 0 0 6485 1497 6324 120346;120347;120348;120349;120350;120351;120352;120353;120354;120355;120356;120357;120358;120359;120360;120361;120362;120363;120364 73783;73784;73785;73786;73787;73788 73786 6 FQRPYGSYVMENVLFK Unmodified 1976.9819 0.9818541 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 42.233 40.694 2;3 4.5224E-14 19771 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 178.15 169.74 470580000 153090000 175820000 141670000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6486 1888 6325 120365;120366;120367;120368;120369;120370 73789;73790;73791;73792;73793;73794 73794 6 FQTAFAQLADNLQSALEPILADK Unmodified 2503.2959 0.29585426 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 2 2 2 2 2 2 1 55.712 54.236 3 0.00014984 27032 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 75.539 68.587 476960000 32830000 5720500 7331600 0 0 0 93478000 68791000 98358000 0 0 0 26497000 35884000 34672000 0 0 0 31190000 26718000 15491000 0 0 0 6487 654 6326 120371;120372;120373;120374;120375;120376;120377;120378;120379;120380;120381;120382;120383;120384;120385;120386;120387;120388;120389 73795;73796;73797;73798;73799 73795 5 FQTTEYPTYK Unmodified 1276.5976 0.59756858 483 P0A917 ompX Outer membrane protein X yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.149 21.958 2 0.00034748 9349 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.98 84.947 449680000 11671000 9158800 9255000 12717000 12302000 11435000 13597000 12876000 9925900 52119000 45099000 42703000 10867000 9542100 10450000 22550000 11317000 12568000 17548000 15972000 15281000 32010000 26867000 21846000 6488 483 6327 120390;120391;120392;120393;120394;120395;120396;120397;120398;120399;120400;120401;120402;120403;120404;120405;120406;120407;120408;120409;120410;120411;120412;120413 73800;73801;73802;73803;73804;73805;73806;73807;73808;73809;73810;73811;73812;73813;73814;73815;73816;73817 73804 16 FQVFGADAMR Unmodified 1140.5386 0.53861391 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.198 34.651 2 2.8764E-12 16542 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 209.87 204.21 6850900000 1047700000 1004100000 846700000 2213500 2357900 2264800 563380000 538030000 475060000 766720 0 0 420700000 415170000 430000000 0 952170 0 306090000 398730000 396670000 0 0 0 6489 489 6328 120414;120415;120416;120417;120418;120419;120420;120421;120422;120423;120424;120425;120426;120427;120428;120429;120430 73818;73819;73820;73821;73822;73823;73824;73825;73826;73827;73828 73824 11 FQVFGADAMR Oxidation (M) 1156.5335 0.53352853 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1 1 30.217 28.907 2 0.010368 13406 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 65.305 60.949 128080000 12067000 27258000 41207000 0 0 0 12610000 0 9809200 0 0 0 12145000 12982000 0 0 0 0 0 0 0 0 0 0 6490 489 6328 120431;120432;120433;120434;120435;120436;120437;120438 73829;73830;73831;73832 73830 287 3 FQVSNPR Unmodified 846.4348 0.43480077 1834 P76216 astB N-succinylarginine dihydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 13.967 14.766 2 0.0008957 4672 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 141.98 119.36 81201000 33840000 26096000 21265000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6491 1834 6329 120439;120440;120441 73833;73834;73835 73834 3 FQVVQGR Unmodified 832.45554 0.45553621 892 P0AEW9 fruK 1-phosphofructokinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.618 16.307 2 0.0052872 5297 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 100.27 31.18 512860000 28871000 28459000 28138000 0 0 0 43596000 42787000 41515000 0 0 0 47873000 34787000 34196000 0 2915500 1993800 59278000 60563000 57886000 0 0 0 6492 892 6330 120442;120443;120444;120445;120446;120447;120448;120449;120450;120451;120452;120453;120454;120455 73836;73837;73838;73839;73840;73841 73839 6 FQYGQHTVTLETGMMAR Unmodified 1968.9186 0.91860192 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 1 1 1 2 2 2 2 2 2 31.472 30.104 2;3 1.4317E-61 14148 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 358.67 354.48 1783700000 106490000 87763000 84104000 5025100 6419400 5749900 141250000 133230000 163720000 0 3291000 0 161660000 164240000 165070000 0 0 0 204120000 179960000 171650000 0 0 0 6493 107 6331 120456;120457;120458;120459;120460;120461;120462;120463;120464;120465;120466;120467;120468;120469;120470;120471;120472;120473;120474;120475;120476;120477;120478;120479;120480;120481 73842;73843;73844;73845;73846;73847;73848;73849;73850;73851;73852;73853;73854;73855;73856;73857;73858 73848 17 FRDEGRDVLLFVDNIYR Unmodified 2126.0909 0.090887278 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 1 1 3 3 3 2 2 2 3 3 3 46.199 44.724 2;3;4 1.191E-31 17688 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 209.53 205 1143900000 0 0 6116000 51402000 54304000 48706000 3419600 4903200 0 147330000 124370000 145160000 0 0 0 64273000 69032000 70181000 0 0 0 119130000 118080000 117510000 6494 646 6332 120482;120483;120484;120485;120486;120487;120488;120489;120490;120491;120492;120493;120494;120495;120496;120497;120498;120499;120500;120501;120502;120503;120504;120505;120506;120507;120508;120509;120510;120511;120512;120513;120514;120515 73859;73860;73861;73862;73863;73864;73865;73866;73867;73868;73869;73870;73871;73872;73873;73874;73875;73876;73877;73878;73879;73880;73881;73882;73883;73884;73885;73886;73887;73888 73874 30 FRDEVRPR Unmodified 1073.573 0.57302558 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 10.75 11.565 2;3 0.0014255 2745 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 90.709 81.526 2939700000 178580000 182410000 245750000 0 0 0 278860000 248010000 252170000 0 0 0 224910000 238800000 219060000 0 0 0 283010000 293770000 294410000 0 0 0 6495 1120 6333 120516;120517;120518;120519;120520;120521;120522;120523;120524;120525;120526;120527;120528;120529;120530;120531;120532;120533;120534;120535;120536;120537;120538;120539 73889;73890;73891;73892;73893;73894;73895;73896;73897;73898;73899;73900;73901;73902 73893 14 FRDIQAQPR Unmodified 1129.5992 0.59924033 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 2 2 1 1 2 2 2 12.59 13.067 2;3 2.0094E-07 3063 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 180.45 154.51 464870000 0 0 0 4373500 7097700 5461400 4367300 3204000 0 29913000 28012000 29896000 0 0 0 5221200 0 1873000 0 2178700 0 103760000 119760000 119750000 6496 205;1157 6334 120540;120541;120542;120543;120544;120545;120546;120547;120548;120549;120550;120551;120552;120553;120554;120555;120556;120557;120558;120559;120560;120561;120562 73903;73904;73905;73906;73907;73908;73909;73910;73911;73912;73913;73914 73910 6 FRDYFDHHEPLSTVPSHR Unmodified 2239.0559 0.055898755 1586 P46837 yhgF Protein YhgF yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 20.176 20.583 4 0.004851 8066 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 48.907 45.898 58327000 6024400 0 3750500 0 0 0 5604600 6896000 0 0 0 0 4856600 3543100 4911700 0 0 0 6335200 6973100 9431500 0 0 0 6497 1586 6335 120563;120564;120565;120566;120567;120568;120569;120570;120571;120572 73915;73916;73917;73918 73916 2 FREELNETHQLFK Unmodified 1689.8475 0.84746911 977 P0AG14 sohB Probable protease SohB yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 22.43 21.94 3;4 8.5627E-08 9576 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.81 150.49 568540000 24497000 21204000 21677000 5581300 7244900 5978900 61558000 54313000 42497000 13649000 22450000 13936000 39805000 32845000 32544000 4806600 4740400 4200500 35528000 51184000 32789000 15430000 13677000 6405500 6498 977 6336 120573;120574;120575;120576;120577;120578;120579;120580;120581;120582;120583;120584;120585;120586;120587;120588;120589;120590;120591;120592;120593;120594;120595;120596;120597;120598;120599;120600;120601;120602;120603;120604;120605;120606;120607;120608;120609;120610;120611;120612;120613;120614;120615;120616;120617;120618;120619 73919;73920;73921;73922;73923;73924;73925;73926;73927;73928;73929;73930;73931;73932;73933;73934;73935 73921 17 FRFNTPVDQLLCDGEQIYGVK Unmodified 2498.2264 0.22639448 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.614 51.499 3 7.5516E-07 20944 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 97.488 94.106 80573000 0 0 0 7036700 3610200 4160800 0 0 0 13052000 8869700 8612100 0 0 2143500 5217000 6683900 0 0 0 0 7629700 6642900 6914400 6499 252 6337 120620;120621;120622;120623;120624;120625;120626;120627;120628;120629;120630;120631 73936;73937;73938;73939;73940;73941 73937 6 FRFPYNTPTSK Unmodified 1356.6826 0.68263561 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 24.86 23.821 2 1.2431E-06 10826 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.97 109.22 49545000 5592300 6688800 5241400 0 0 0 10135000 16945000 0 0 0 0 0 0 0 0 0 0 2561800 0 2379800 0 0 0 6500 1191 6338 120632;120633;120634;120635;120636;120637;120638;120639 73942;73943 73943 2 FRNDEAFLQQVMK Unmodified 1624.8032 0.80316145 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 2 1 1 2 2 2 1 1 1 1 1 1 1 35.798 34.158 2;3 1.8823E-23 16685 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 227.36 212.1 1316800000 102940000 77772000 112670000 0 792350 601900 115690000 115030000 120220000 0 0 0 118940000 97734000 99525000 0 0 0 112720000 118920000 122210000 0 0 1017200 6501 57 6339 120640;120641;120642;120643;120644;120645;120646;120647;120648;120649;120650;120651;120652;120653;120654;120655;120656;120657;120658 73944;73945;73946;73947 73945 4 FRPGTDEGDYQVK Unmodified 1510.7052 0.70522155 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 16.14 16.765 2;3 3.8806E-09 5758 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 133.15 130.51 3197200000 581630000 600420000 425040000 7033800 8178600 10218000 153940000 183250000 166890000 39179000 23324000 27872000 163700000 140160000 141040000 0 6618500 5823700 173670000 155320000 162790000 7743200 5809100 7527400 6502 298 6340 120659;120660;120661;120662;120663;120664;120665;120666;120667;120668;120669;120670;120671;120672;120673;120674;120675;120676;120677;120678;120679;120680;120681;120682;120683;120684;120685;120686;120687;120688;120689;120690;120691;120692;120693;120694;120695;120696;120697;120698;120699 73948;73949;73950;73951;73952;73953;73954;73955;73956;73957;73958;73959;73960;73961;73962;73963;73964;73965;73966;73967;73968;73969;73970;73971;73972;73973;73974;73975;73976;73977;73978;73979;73980 73971 33 FRPSYFPFTEPSAEVDVMGK Unmodified 2303.0933 0.093255043 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 46.587 45.091 2;3 9.9792E-30 22092 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 237.4 225.93 4285300000 421560000 412010000 340170000 0 0 0 266500000 251560000 255380000 0 3819300 6376700 359550000 361360000 328890000 0 0 0 402190000 450750000 425160000 0 0 0 6503 183 6341 120700;120701;120702;120703;120704;120705;120706;120707;120708;120709;120710;120711;120712;120713;120714;120715;120716;120717;120718;120719;120720;120721;120722;120723;120724;120725 73981;73982;73983;73984;73985;73986;73987;73988;73989;73990;73991;73992;73993;73994;73995;73996;73997;73998;73999;74000;74001;74002;74003;74004;74005;74006 73996 26 FRPYVGAGINYTTFFDNGFNDHGK Unmodified 2736.2721 0.27209912 482 P0A915 ompW Outer membrane protein W yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 45.603 43.468 3;4 5.5228E-10 17433 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 115.54 115.54 80204000 0 0 0 0 0 0 0 0 0 25912000 26939000 21813000 0 0 3461900 0 0 0 0 0 0 0 2078400 0 6504 482 6342 120726;120727;120728;120729;120730;120731;120732;120733 74007;74008;74009;74010 74009 4 FRQNLLGK Unmodified 974.56615 0.56614929 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 2 2 2 1 1 1 15.793 16.007 2 5.4298E-09 4066 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 211.23 182.08 10443000000 0 0 0 5834900 4813700 5202500 0 0 0 842820000 737290000 720930000 0 0 0 2811300000 911290000 1116500000 0 0 0 1105100000 1097300000 1084400000 6505 458 6343 120734;120735;120736;120737;120738;120739;120740;120741;120742;120743;120744;120745;120746;120747;120748;120749;120750 74011;74012;74013;74014;74015;74016;74017;74018;74019;74020;74021;74022;74023;74024;74025;74026;74027 74012 17 FRQNLLGKR Unmodified 1130.6673 0.66726032 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 12.948 13.115 2;3 1.397E-21 2979 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 257.11 235.15 1655200000 0 0 0 0 0 0 0 0 0 64043000 60856000 71191000 0 0 0 437120000 316100000 333060000 0 0 0 137030000 131270000 104530000 6506 458 6344 120751;120752;120753;120754;120755;120756;120757;120758;120759;120760;120761;120762;120763;120764;120765;120766;120767;120768 74028;74029;74030;74031;74032;74033;74034;74035;74036;74037;74038;74039;74040;74041;74042;74043;74044;74045 74031 18 FSAAQFSPLLEHEK Unmodified 1602.8042 0.80420731 1809 P76035 yciW Uncharacterized protein YciW yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.746 34.176 3 0.00018508 16212 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 56.793 55.3 213190000 32752000 29051000 25607000 739270 662280 589730 7578300 14935000 12665000 0 0 0 10086000 9251900 9596000 0 0 0 16682000 20449000 22549000 0 0 0 6507 1809 6345 120769;120770;120771;120772;120773;120774;120775;120776;120777;120778;120779;120780;120781;120782;120783 74046 74046 1 FSAASQPAAPVTK Unmodified 1273.6667 0.6666512 972 P0AFY8 seqA Negative modulator of initiation of replication yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.147 17.621 2 8.7972E-07 6396 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.89 132.58 96862000 5910900 5486000 4089500 906420 0 0 7768300 5432000 6557500 1761700 1756600 1596400 7962300 5061000 6202000 6106900 3385700 3438100 8168700 6430700 7654500 1186800 0 0 6508 972 6346 120784;120785;120786;120787;120788;120789;120790;120791;120792;120793;120794;120795;120796;120797;120798;120799;120800;120801;120802;120803 74047;74048;74049;74050;74051;74052;74053;74054;74055;74056;74057;74058 74051 12 FSADDIQR Unmodified 950.44576 0.44575938 1752 P69831 gatC Galactitol permease IIC component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1 1 3 3 3 1 2 1 3 3 2 1 1 1 2 2 3 1 2 2 20.168 20.2 2 3.4132E-05 7331 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 174.21 119.68 3298500000 125580000 104960000 98285000 13269000 12428000 11275000 434840000 450000000 417650000 86048000 77728000 74772000 287320000 230180000 192480000 9381400 7902800 7574500 218810000 194220000 193640000 17307000 17127000 15696000 6509 1752 6347 120804;120805;120806;120807;120808;120809;120810;120811;120812;120813;120814;120815;120816;120817;120818;120819;120820;120821;120822;120823;120824;120825;120826;120827;120828;120829;120830;120831;120832;120833;120834;120835;120836;120837;120838;120839;120840;120841;120842;120843;120844;120845;120846;120847;120848;120849;120850 74059;74060;74061;74062;74063;74064;74065;74066;74067;74068;74069;74070;74071;74072;74073;74074;74075;74076;74077;74078;74079;74080;74081;74082;74083;74084;74085;74086;74087;74088;74089 74067 31 FSADDIQRK Unmodified 1078.5407 0.5407224 1752 P69831 gatC Galactitol permease IIC component yes yes 0 0 1 By MS/MS 1 14.523 14.579 3 0.10131 3852 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 27.329 18.748 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6510 1752 6348 120851 74090 74090 1 FSAEQLSHWLKPR Unmodified 1597.8365 0.83651049 1381 P31806 nnr Bifunctional NAD(P)H-hydrate repair enzyme Nnr;ADP-dependent (S)-NAD(P)H-hydrate dehydratase;NAD(P)H-hydrate epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 35.084 33.627 3 4.1023E-07 15998 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.45 134.27 73965000 15963000 14416000 12069000 0 0 0 6729000 4567400 6390700 0 0 0 2221400 3410400 3478300 0 0 0 0 4719100 0 0 0 0 6511 1381 6349 120852;120853;120854;120855;120856;120857;120858;120859;120860;120861 74091;74092;74093 74092 3 FSAPSHIVLENVTFGR Unmodified 1772.921 0.9209684 1366 P31433 yicH Uncharacterized protein YicH yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.38 37.623 3 1.2943E-10 18783 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 149 142.28 130560000 6411000 8948400 6801600 1881500 2826500 1326400 12369000 10768000 11947000 6283500 4206500 4070700 7435000 5979900 5466800 0 676530 0 10896000 10996000 8062400 1361600 0 1846400 6512 1366 6350 120862;120863;120864;120865;120866;120867;120868;120869;120870;120871;120872;120873;120874;120875;120876;120877;120878;120879;120880;120881;120882 74094;74095;74096;74097 74095 4 FSASASEIFAAAMQDYGR Unmodified 1920.8676 0.8676122 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 53.479 51.991 2 1.3412E-13 25459 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 144.27 115.36 43800000 0 0 0 0 0 0 6534900 6299000 5876500 0 0 0 5278300 0 0 0 0 0 6879200 7071600 5861000 0 0 0 6513 1221 6351 120883;120884;120885;120886;120887;120888;120889 74098;74099;74100;74101;74102;74103 74101 6 FSATFDDQMLVDYSK Unmodified 1765.7869 0.78690227 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 4 2 3 2 1 2 2 2 1 48.307 46.902 2 2.1848E-08 22216 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 136.7 127.51 392260000 36589000 39227000 36851000 0 0 0 63901000 40539000 59099000 0 0 0 20769000 17091000 18154000 0 0 0 21344000 25238000 13462000 0 0 0 6514 277 6352 120890;120891;120892;120893;120894;120895;120896;120897;120898;120899;120900;120901;120902;120903;120904;120905;120906;120907;120908;120909;120910;120911;120912;120913;120914;120915;120916;120917;120918 74104;74105;74106;74107;74108;74109;74110;74111;74112;74113;74114;74115;74116;74117;74118;74119;74120;74121;74122;74123;74124;74125;74126;74127;74128;74129;74130;74131;74132;74133;74134;74135 74119 26 FSAVLEQGAIAAGSDDK Unmodified 1677.821 0.82097959 756 P0ACY1 ydjA Putative NAD(P)H nitroreductase YdjA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.346 31.906 2 1.0334E-49 15043 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 275.35 260.45 641800000 65296000 58598000 57234000 0 0 0 66977000 71364000 60901000 0 0 0 31135000 35490000 31879000 0 0 0 51180000 56203000 55542000 0 0 0 6515 756 6353 120919;120920;120921;120922;120923;120924;120925;120926;120927;120928;120929;120930 74136;74137;74138;74139;74140;74141;74142;74143;74144 74139 9 FSDEIGGHLMSGHIMTTAEVAK Unmodified 2330.1035 0.10350215 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.781 31.349 3;4 5.0027E-07 15195 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 105.22 96.745 1014800000 107450000 75893000 73886000 0 0 0 98564000 66293000 89177000 0 0 0 87520000 82062000 80061000 0 0 0 91727000 79161000 82992000 0 0 0 6516 963 6354 120931;120932;120933;120934;120935;120936;120937;120938;120939;120940;120941;120942;120943;120944;120945;120946;120947;120948;120949;120950;120951;120952;120953;120954 74145;74146;74147;74148;74149;74150;74151;74152;74153;74154;74155;74156;74157;74158;74159;74160;74161;74162;74163;74164 74148 20 FSDFALHPK Unmodified 1060.5342 0.53418046 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 21.51 21.62 2;3 0.010599 8955 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 54.416 51.565 287940000 23651000 42035000 27713000 3265700 3977200 3209700 14144000 16358000 13890000 4055300 3546100 2161300 11252000 7589600 9947700 0 0 0 24637000 33271000 36041000 3050200 1706300 2439400 6517 438 6355 120955;120956;120957;120958;120959;120960;120961;120962;120963;120964;120965;120966;120967;120968;120969;120970;120971;120972;120973;120974;120975;120976;120977;120978;120979 74165;74166;74167;74168;74169;74170;74171;74172;74173;74174;74175;74176;74177;74178;74179;74180;74181;74182 74167 18 FSDGEVSVQINENVR Unmodified 1691.8115 0.81147753 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 32.738 31.229 2 5.9275E-20 15059 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 203.11 193.16 123600000 15534000 0 10156000 6628600 6626500 7173200 8744800 0 10457000 0 2064900 4513200 0 3104700 4456100 1206600 0 0 4084000 3509200 8009900 8848800 9288600 9196600 6518 300 6356 120980;120981;120982;120983;120984;120985;120986;120987;120988;120989;120990;120991;120992;120993;120994;120995;120996;120997;120998;120999;121000 74183;74184;74185;74186;74187;74188;74189;74190;74191 74190 9 FSDIPIVMVTAK Unmodified 1319.7159 0.71590958 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.695 44.247 2 0.0010182 22088 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 93.096 62.532 143590000 20283000 15959000 18667000 0 0 0 10095000 8558400 9158900 0 0 0 10638000 8578000 7324700 0 0 0 12168000 11066000 11095000 0 0 0 6519 1728 6357 121001;121002;121003;121004;121005;121006;121007;121008;121009;121010;121011;121012 74192;74193;74194 74192 2 FSDPTVDETTGSVTLR Unmodified 1723.8265 0.8264589 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 1 1 1 2 2 2 1 33.263 31.432 2;3 6.0903E-31 15322 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 240.65 235.16 152820000 16843000 11537000 10909000 2631700 2519300 2492300 19805000 19645000 18200000 15840000 16382000 13221000 2792200 0 0 0 0 0 0 0 0 0 0 0 6520 1477 6358 121013;121014;121015;121016;121017;121018;121019;121020;121021;121022;121023;121024;121025;121026;121027;121028;121029 74195;74196;74197;74198;74199;74200;74201 74199 7 FSDYLGR Unmodified 856.40792 0.40791731 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.768 22.239 2 0.00080871 9439 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 144.29 124.73 456460000 72738000 72042000 64758000 0 0 0 34790000 36206000 38138000 0 0 0 18145000 16480000 17324000 0 0 0 28438000 27089000 30314000 0 0 0 6521 1850 6359 121030;121031;121032;121033;121034;121035;121036;121037;121038;121039;121040;121041 74202;74203;74204;74205;74206;74207;74208;74209;74210 74204 9 FSEASLVK Unmodified 879.47018 0.47018322 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 2 2 1 1 1 21.022 21.173 2 0.0050114 6446 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 87.323 59.068 1086100000 81956000 70297000 63966000 1261500 1124700 1550700 75524000 79736000 79286000 6005400 4948400 5048700 99100000 78949000 76251000 8663300 7526500 7166200 101920000 107820000 103280000 9078500 7673400 7966200 6522 124 6360 121042;121043;121044;121045;121046;121047;121048;121049;121050;121051;121052;121053;121054;121055;121056;121057;121058;121059;121060;121061;121062;121063;121064;121065;121066;121067;121068;121069;121070 74211;74212;74213;74214;74215;74216;74217;74218;74219;74220;74221;74222;74223;74224;74225;74226 74211 16 FSEEAASWMQEQR Unmodified 1597.6831 0.6831059 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.276 30.936 2 3.183E-50 14608 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 304.63 300.74 523160000 50496000 49306000 46861000 0 0 0 40367000 42459000 44034000 0 0 0 36200000 33813000 39558000 0 0 0 46395000 49859000 43811000 0 0 0 6523 688 6361 121071;121072;121073;121074;121075;121076;121077;121078;121079;121080;121081;121082 74227;74228;74229;74230;74231;74232;74233;74234;74235;74236;74237;74238 74230 12 FSELWLR Unmodified 949.50215 0.50215205 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.444 37.656 2 0.00026773 18765 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 160.69 147.02 2973300000 261650000 237580000 234530000 1367600 2203000 1963300 200810000 191790000 185210000 0 2229100 2348500 252140000 247530000 230790000 0 0 0 302680000 307150000 309760000 0 1585800 0 6524 161 6362 121083;121084;121085;121086;121087;121088;121089;121090;121091;121092;121093;121094;121095;121096;121097;121098;121099;121100 74239;74240;74241;74242;74243;74244;74245;74246;74247;74248;74249;74250;74251;74252 74239 14 FSEVCVGHLGK Unmodified 1231.6019 0.60194245 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 20.573 20.677 2;3 2.0535E-05 6452 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 135.79 132.81 632730000 0 10317000 7150600 4017200 4892500 4072500 68118000 60193000 61592000 22000000 21370000 19718000 14493000 13124000 10979000 0 1633500 0 22862000 82421000 19125000 64066000 55862000 64726000 6525 205 6363 121101;121102;121103;121104;121105;121106;121107;121108;121109;121110;121111;121112;121113;121114;121115;121116;121117;121118;121119;121120;121121;121122;121123;121124;121125;121126;121127;121128;121129;121130;121131;121132;121133;121134;121135;121136;121137 74253;74254;74255;74256;74257;74258;74259;74260;74261;74262;74263;74264;74265;74266;74267;74268;74269;74270 74259 18 FSEVEQNDKLEWLIR Unmodified 1904.9632 0.96322715 599 P0AAJ5 fdoH Formate dehydrogenase-O iron-sulfur subunit yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 41.354 39.541 3 2.7387E-06 16171 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 102.28 96.848 30852000 2656100 0 4011800 3978900 0 3941400 0 0 0 4519900 2769400 0 0 0 1264200 0 0 0 0 5017400 2692300 0 0 0 6526 599 6364 121138;121139;121140;121141;121142;121143;121144;121145;121146 74271;74272;74273 74271 3 FSGDIAK Unmodified 736.37555 0.37555455 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1 1 2 1 1 2 2 1 13.19 13.944 1;2 0.0086725 4283 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.91 2.6952 3115600000 0 275540000 286300000 0 0 0 214850000 229790000 193310000 2505300 1592900 1583500 371440000 308100000 239080000 0 0 0 321610000 332980000 336890000 0 0 0 6527 788 6365 121147;121148;121149;121150;121151;121152;121153;121154;121155;121156;121157;121158;121159;121160;121161;121162;121163;121164;121165;121166 74274;74275;74276;74277;74278;74279;74280;74281;74282;74283;74284;74285;74286;74287 74275 12 FSGNYGNMTEVSYQVAK Unmodified 1893.8567 0.85671317 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.201 31.528 2 5.514E-19 14934 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 194.06 188.18 167180000 22496000 20306000 18491000 3294400 2992700 2954700 7942400 7832000 8829900 4291800 4260900 5157700 6505000 9675200 6966800 0 0 0 10368000 7941600 8693100 2532400 2983000 2663300 6528 1829 6366 121167;121168;121169;121170;121171;121172;121173;121174;121175;121176;121177;121178;121179;121180;121181;121182;121183;121184;121185;121186;121187 74288;74289;74290;74291;74292;74293;74294;74295;74296;74297;74298;74299;74300;74301;74302 74298 15 FSHLVEPGLNWKPTFIDEVKPVNVEAVR Unmodified 3219.7081 0.70806909 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 44.234 42.566 4;5 1.4944E-22 16998 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 158.18 158.01 1951300000 35954000 34375000 27558000 31919000 28536000 35903000 167370000 214240000 179050000 78595000 72615000 82938000 107060000 108930000 74687000 10851000 0 25319000 81312000 228330000 192000000 39297000 42986000 51501000 6529 649 6367 121188;121189;121190;121191;121192;121193;121194;121195;121196;121197;121198;121199;121200;121201;121202;121203;121204;121205;121206;121207;121208;121209;121210;121211;121212;121213;121214;121215;121216;121217;121218;121219;121220;121221;121222;121223;121224;121225;121226;121227 74303;74304;74305;74306;74307;74308;74309;74310;74311;74312;74313;74314;74315;74316;74317;74318;74319;74320;74321;74322;74323;74324;74325;74326;74327;74328;74329 74310 24 FSIALLNQAVER Unmodified 1359.751 0.75104953 1436 P34209 ydcF Protein YdcF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.228 44.738 2 3.45E-17 22358 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 219.03 207.88 257820000 46827000 48215000 48849000 0 0 0 22901000 15104000 12724000 0 0 0 10190000 8303600 11891000 0 0 0 9475800 13177000 10159000 0 0 0 6530 1436 6368 121228;121229;121230;121231;121232;121233;121234;121235;121236;121237;121238;121239 74330;74331;74332;74333;74334;74335;74336;74337;74338;74339;74340 74330 11 FSIDDFQK Unmodified 998.47091 0.4709115 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.257 32.724 2 0.00071397 15439 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.28 126.28 2236900000 229750000 226820000 220780000 930600 0 1082200 169150000 169510000 149560000 0 0 0 157520000 152710000 158340000 0 0 0 185350000 208110000 205710000 820920 706280 0 6531 172 6369 121240;121241;121242;121243;121244;121245;121246;121247;121248;121249;121250;121251;121252;121253;121254;121255 74341;74342;74343;74344;74345;74346 74345 4 FSIGFGK Unmodified 754.40138 0.40137537 859 P0AEH1 rseP Regulator of sigma-E protease RseP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.767 30.308 2 0.10187 14306 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 53.554 53.554 44468000 2190600 0 1955500 966670 0 493600 3440200 3258800 4326100 0 1619200 1477400 2919500 3199900 2627400 798210 0 0 4272500 4235800 5109600 728740 848350 0 6532 859 6370 121256;121257;121258;121259;121260;121261;121262;121263;121264;121265;121266;121267;121268;121269;121270;121271;121272;121273 74347;74348 74347 2 FSIIHGPFSALGEYVAER Unmodified 1992.0105 0.010511692 1619 P60390 rsmH Ribosomal RNA small subunit methyltransferase H yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 49.632 48.225 3 0.0027882 22602 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 56.424 53.247 168940000 0 0 0 0 0 0 22147000 20348000 20312000 0 0 0 20697000 13959000 15832000 0 0 0 20337000 18471000 16832000 0 0 0 6533 1619 6371 121274;121275;121276;121277;121278;121279;121280;121281;121282 74349;74350 74350 1 FSISFIR Unmodified 868.48069 0.48068833 609 P0AAS0 ylaC Inner membrane protein YlaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.375 39.427 2 1.8475E-08 18234 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 210.37 86.044 158790000 0 0 0 0 0 0 12507000 10377000 8632300 2576400 1525700 0 14351000 11920000 13589000 0 0 0 27414000 24477000 22796000 2333600 3081200 3208900 6534 609 6372 121283;121284;121285;121286;121287;121288;121289;121290;121291;121292;121293;121294;121295;121296 74351;74352;74353;74354;74355;74356;74357;74358;74359;74360;74361;74362 74362 12 FSLEGGDALIPMLK Unmodified 1489.7851 0.78505177 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 1 1 2 2 2 2 2 1 1 1 53.541 52.141 2;3 1.6822E-07 25711 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.46 131.21 1292400000 1534200 2290700 172460000 4303700 0 4027200 1413500 80970000 95863000 0 2728500 2806300 120550000 127900000 143340000 0 0 0 2660900 267720000 230610000 9464900 10087000 11699000 6535 937 6373 121297;121298;121299;121300;121301;121302;121303;121304;121305;121306;121307;121308;121309;121310;121311;121312;121313;121314;121315;121316;121317;121318;121319;121320;121321;121322;121323;121324 74363;74364;74365;74366;74367;74368;74369;74370;74371;74372;74373;74374;74375;74376;74377;74378;74379;74380 74375 18 FSLEGGDALIPMLK Oxidation (M) 1505.78 0.7799664 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 1 0 By MS/MS By matching 1 1 50.184 48.757 2 0.0565 23799 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 42.556 38.219 11560000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6114400 5445300 0 0 0 0 6536 937 6373 121325;121326 74381 74381 1 FSLPDQDGEQVNLTDFQGQR Unmodified 2293.0611 0.061103292 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 2 2 2 2 1 1 2 3 2 45.573 44.237 2;3 2.0684E-81 21380 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 322.18 304.98 3861800000 540670000 440310000 414940000 0 0 0 260060000 231190000 235240000 0 0 0 275810000 238340000 245280000 0 3273700 3942700 300400000 327880000 344420000 0 0 0 6537 834 6374 121327;121328;121329;121330;121331;121332;121333;121334;121335;121336;121337;121338;121339;121340;121341;121342;121343;121344;121345;121346;121347;121348;121349;121350;121351;121352;121353;121354;121355 74382;74383;74384;74385;74386;74387;74388;74389;74390;74391;74392;74393;74394;74395;74396;74397;74398;74399;74400;74401;74402;74403;74404;74405;74406 74399 25 FSLPQPPVCLR Unmodified 1312.6962 0.69617719 1945 P77808 yfaY NMN amidohydrolase-like protein YfaY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.219 42.704 2 0.00013221 21286 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.71 102.56 133020000 13007000 10753000 9419100 0 0 0 12727000 12293000 9924600 0 0 0 10923000 9630800 10702000 0 0 0 12727000 10980000 9931900 0 0 0 6538 1945 6375 121356;121357;121358;121359;121360;121361;121362;121363;121364;121365;121366;121367 74407;74408;74409;74410;74411;74412;74413;74414;74415;74416;74417;74418 74407 12 FSLSTLPAADFPNLDDWQSEVEFTLPQATMK Oxidation (M) 3513.665 0.6650028 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 1 0 By MS/MS By MS/MS 1 1 55.619 54.121 3 0.00066292 21875 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 59.536 57.811 176750000 0 0 0 0 0 0 0 0 0 101000000 0 75755000 0 0 0 0 0 0 0 0 0 0 0 0 6539 497 6376 121368;121369 74419;74420 74420 291 2 FSLSTLPAADFPNLDDWQSEVEFTLPQATMK Unmodified 3497.6701 0.67008818 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 55.735 54.287 3;4 1.1865E-12 21928 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 118.47 114.19 3222800000 10159000 9875100 9095900 0 0 0 9904700 0 8607900 1056400000 1137400000 908910000 6381500 8470900 7497800 0 0 0 9980100 11311000 10964000 7202000 4267200 6369500 6540 497 6376 121370;121371;121372;121373;121374;121375;121376;121377;121378;121379;121380;121381;121382;121383;121384;121385;121386;121387;121388;121389 74421;74422;74423;74424;74425;74426 74425 6 FSNGEPFDAEAAAENFR Unmodified 1870.8122 0.81220581 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 40.195 38.454 2 2.5538E-10 17993 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 138.42 136.2 74138000 0 0 0 0 0 0 6899500 7500000 7558100 0 0 0 7428100 9563500 6485400 0 0 0 9139400 9980400 9583600 0 0 0 6541 1424 6377 121390;121391;121392;121393;121394;121395;121396;121397;121398 74427;74428;74429;74430;74431;74432 74431 6 FSNPSLR Unmodified 819.4239 0.42390173 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 15.813 16.544 2 0.00078589 5373 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 144.9 96.14 192700000 49472000 49401000 49876000 0 0 0 0 0 0 0 0 0 0 21771000 20540000 0 0 0 0 0 0 0 1640200 0 6542 1508 6378 121399;121400;121401;121402;121403;121404;121405;121406 74433;74434;74435;74436;74437;74438 74437 6 FSNSSSSNEFSK Unmodified 1319.563 0.56297399 20 CON__Q5D862 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 13.893 14.099 2 0.036637 3513 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 46.844 43.272 11291000 0 0 0 0 0 0 0 0 0 1687500 1201400 1033600 0 0 0 0 0 0 0 0 0 2114300 2111500 3142300 + 6543 20 6379 121407;121408;121409;121410;121411;121412 74439;74440 74439 1 FSPAQLDAEALINLLR Unmodified 1769.9676 0.96758424 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.576 54.102 3 1.3445E-08 26655 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.32 113.76 148310000 11441000 12844000 16535000 0 0 0 9757700 9864200 9096500 0 0 0 12274000 12363000 11305000 0 0 0 18103000 10900000 13821000 0 0 0 6544 1503 6380 121413;121414;121415;121416;121417;121418;121419;121420;121421;121422;121423;121424 74441 74441 1 FSPAQLDAEALINLLRPLTPR Unmodified 2334.306 0.30596543 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.401 54.027 3 1.7136E-28 26596 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 199.12 198.11 2644400000 279600000 269140000 267790000 9674100 11735000 11298000 190450000 194930000 188250000 0 12556000 12273000 160920000 152920000 153160000 0 4167300 0 219590000 231590000 234630000 11786000 15129000 12863000 6545 1503 6381 121425;121426;121427;121428;121429;121430;121431;121432;121433;121434;121435;121436;121437;121438;121439;121440;121441;121442;121443;121444;121445 74442;74443;74444;74445;74446;74447;74448;74449;74450;74451;74452;74453 74445 12 FSPDMTPEDPIVMESIK Unmodified 1934.9006 0.90055182 123 P06610 btuE Vitamin B12 transport periplasmic protein BtuE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.427 46.038 2 4.4326E-07 22858 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.19 136.8 885530000 164020000 146400000 125890000 0 0 0 58652000 61300000 61810000 0 0 0 40572000 34652000 38437000 0 0 0 52488000 54245000 47054000 0 0 0 6546 123 6382 121446;121447;121448;121449;121450;121451;121452;121453;121454;121455;121456;121457 74454;74455;74456;74457;74458;74459;74460;74461;74462;74463;74464;74465 74454 12 FSPGYMAMAHQLPVAGVVEAVIDGVR Unmodified 2713.372 0.37201286 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.194 53.968 3 3.3894E-07 21723 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 103.16 96.438 934990000 47910000 43205000 44555000 5819000 5436600 4985500 65415000 54557000 54456000 0 23258000 26890000 78506000 79206000 70238000 33404000 31449000 61021000 70824000 68287000 65569000 0 0 0 6547 1196 6383 121458;121459;121460;121461;121462;121463;121464;121465;121466;121467;121468;121469;121470;121471;121472;121473;121474;121475;121476;121477 74466;74467;74468;74469;74470;74471;74472;74473;74474 74468 8 FSQNPAYHTQLSQPIETVMLALNTAK Unmodified 2901.4695 0.4694783 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 52.614 51.32 3 1.8502E-10 24974 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 119.86 117.83 408990000 0 0 9764100 0 0 0 47436000 47510000 42538000 0 0 0 56034000 0 51732000 0 0 0 51365000 50183000 52425000 0 0 0 6548 1424 6384 121478;121479;121480;121481;121482;121483;121484;121485;121486 74475;74476;74477;74478 74476 4 FSQQHQPLLVSLESLGR Unmodified 1938.0323 0.032309767 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 3 2 1 1 1 2 2 2 2 2 2 42.18 40.436 2;3 5.3266E-14 20259 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 192.65 184.55 2551500000 26869000 24226000 19451000 2983000 2697700 2269700 236240000 240730000 219670000 34587000 33300000 41511000 189410000 172290000 188200000 17700000 13443000 15489000 311750000 344390000 327420000 28809000 28100000 29953000 6549 531 6385 121487;121488;121489;121490;121491;121492;121493;121494;121495;121496;121497;121498;121499;121500;121501;121502;121503;121504;121505;121506;121507;121508;121509;121510;121511;121512;121513;121514;121515;121516;121517;121518;121519;121520;121521;121522;121523;121524;121525;121526;121527;121528;121529 74479;74480;74481;74482;74483;74484;74485;74486;74487;74488;74489;74490;74491;74492;74493;74494;74495;74496;74497;74498;74499;74500;74501;74502;74503;74504;74505;74506;74507;74508;74509;74510;74511;74512;74513;74514;74515;74516;74517;74518 74487 40 FSQYLLDSDKR Unmodified 1370.683 0.68302954 1618 P60340 truB tRNA pseudouridine synthase B yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 22.903 22.328 2 0.00013949 9181 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.7 108.48 33394000 0 0 3296900 0 0 0 4838900 3305400 0 0 0 0 4987000 4623500 4188800 0 0 0 3550100 0 4603300 0 0 0 6550 1618 6386 121530;121531;121532;121533;121534;121535;121536;121537 74519;74520;74521 74519 3 FSSAFSALAETLDNQEER Unmodified 2013.928 0.92796385 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 50.923 49.602 2;3 1.83E-36 24135 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 233.37 222.42 534000000 27564000 25913000 23225000 7284500 7431600 5974100 15665000 30459000 26195000 14780000 14514000 14351000 39462000 34961000 41293000 0 0 0 54277000 66506000 58424000 9314200 8399700 8008600 6551 1854 6387 121538;121539;121540;121541;121542;121543;121544;121545;121546;121547;121548;121549;121550;121551;121552;121553;121554;121555;121556;121557;121558;121559;121560;121561;121562;121563;121564;121565;121566;121567;121568;121569;121570;121571;121572;121573;121574;121575;121576;121577;121578 74522;74523;74524;74525;74526;74527;74528;74529;74530;74531;74532;74533;74534;74535;74536;74537;74538;74539;74540;74541;74542;74543;74544 74530 22 FSSAFSALAETLDNQEEREK Unmodified 2271.0655 0.065519968 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 45.051 43.089 3 1.9218E-19 16926 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 164.59 163.45 127540000 0 0 0 9185100 6936900 7836900 0 0 0 20509000 18958000 21375000 0 0 0 0 0 0 0 0 0 13581000 14899000 14258000 6552 1854 6388 121579;121580;121581;121582;121583;121584;121585;121586;121587 74545;74546;74547;74548;74549;74550;74551;74552;74553 74550 9 FSSCGGGGGSFGAGGGFGSR Unmodified 1764.7274 0.72743033 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 3 2 1 2 2 3 3 26.462 25.262 2;3 1.2125E-29 8843 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 203.32 201.73 495740000 0 0 0 8454400 9855500 11348000 0 0 0 123590000 112290000 97997000 0 0 0 6114900 4268900 4940300 0 0 0 37536000 36790000 42549000 + 6553 11 6389 121588;121589;121590;121591;121592;121593;121594;121595;121596;121597;121598;121599;121600;121601;121602;121603;121604;121605;121606;121607;121608;121609;121610;121611;121612;121613;121614 74554;74555;74556;74557;74558;74559;74560;74561;74562;74563;74564;74565;74566;74567;74568;74569;74570;74571;74572;74573;74574 74571 21 FSSSSGYGGGSSR Unmodified 1234.5214 0.52144352 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.141 12.521 2 2.5582E-12 2824 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 188.28 188.28 829240000 0 0 0 15194000 17983000 16992000 0 0 0 225790000 185410000 201540000 0 0 0 6387000 6457700 6695000 0 0 0 48178000 43332000 55285000 + 6554 16 6390 121615;121616;121617;121618;121619;121620;121621;121622;121623;121624;121625;121626 74575;74576;74577;74578;74579;74580;74581;74582;74583 74576 9 FSTNTVPR Unmodified 920.47158 0.4715802 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.095 15.843 2 3.551E-05 5072 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 173.93 137.75 633070000 85889000 107800000 93063000 0 0 0 59338000 56553000 60355000 0 0 0 27387000 30079000 37417000 0 0 0 40522000 32837000 0 1822800 0 0 6555 218 6391 121627;121628;121629;121630;121631;121632;121633;121634;121635;121636;121637;121638 74584;74585;74586;74587;74588;74589;74590;74591;74592 74590 9 FSTVQGGAGSADTVR Unmodified 1451.7005 0.70047052 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.929 17.636 2 3.8927E-20 6208 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 210.91 197.96 668390000 93562000 87241000 88359000 951370 0 0 100560000 89440000 93158000 0 0 1053900 11967000 9458600 10639000 0 0 0 27094000 26818000 28086000 0 0 0 6556 1174 6392 121639;121640;121641;121642;121643;121644;121645;121646;121647;121648;121649;121650;121651;121652 74593;74594;74595;74596 74596 4 FSTYATWWIR Unmodified 1329.6506 0.6506072 36;1089 P13445;P00579 rpoS;rpoD RNA polymerase sigma factor RpoS;RNA polymerase sigma factor RpoD no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 6 6 7 1 1 1 48.93 48.424 2;3 6.5666E-07 19340 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 201.39 192.54 5894100000 0 0 2035300 1666900 0 1220800 3997200 0 0 21621000 25081000 25997000 0 0 0 2414900000 1586200000 1784200000 0 0 0 9919800 8636700 8537300 6557 1089;36 6393 121653;121654;121655;121656;121657;121658;121659;121660;121661;121662;121663;121664;121665;121666;121667;121668;121669;121670;121671;121672;121673;121674;121675;121676;121677;121678;121679;121680;121681 74597;74598;74599;74600;74601;74602;74603;74604;74605;74606;74607;74608;74609;74610;74611;74612;74613;74614;74615;74616;74617;74618;74619;74620;74621;74622;74623;74624;74625 74621 28 FSVAPMLDWTDR Unmodified 1436.6758 0.67583567 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 52.391 51.105 2 8.0742E-05 24083 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 100.82 87.728 208960000 32957000 24299000 27431000 0 0 0 17859000 17210000 18008000 0 0 0 19936000 0 0 0 0 0 24804000 26454000 0 0 0 0 6558 1399 6394 121682;121683;121684;121685;121686;121687;121688;121689;121690 74626;74627;74628;74629;74630;74631;74632;74633 74633 8 FSVEAPK Unmodified 776.40685 0.40685468 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 18.353 18.734 1;2 0.013597 5258 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 83.614 57.505 6833300000 930140000 969450000 835350000 23461000 22077000 30122000 278770000 265910000 257000000 57434000 48268000 34800000 442670000 364430000 330690000 50713000 29841000 32592000 567330000 573320000 571290000 44070000 36413000 37141000 6559 1630 6395 121691;121692;121693;121694;121695;121696;121697;121698;121699;121700;121701;121702;121703;121704;121705;121706;121707;121708;121709;121710;121711;121712;121713;121714;121715;121716;121717;121718;121719;121720;121721;121722;121723;121724;121725;121726;121727;121728;121729;121730;121731;121732;121733;121734;121735;121736 74634;74635;74636;74637;74638;74639;74640;74641;74642;74643;74644;74645;74646;74647;74648;74649;74650;74651;74652;74653;74654;74655 74636 21 FSVVPPGTGICHQVNLEYLGK Unmodified 2314.178 0.17798773 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 1 1 1 2 1 2 42.652 40.913 2;3 6.502E-22 20064 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.66 175.66 2488800000 647600000 561590000 629530000 0 0 0 135030000 121440000 109370000 0 0 0 27082000 21493000 27971000 0 0 0 74668000 63017000 69988000 0 0 0 6560 1254 6396 121737;121738;121739;121740;121741;121742;121743;121744;121745;121746;121747;121748;121749;121750;121751;121752;121753;121754;121755;121756 74656;74657;74658;74659;74660;74661;74662;74663;74664;74665 74661 10 FSWFDYR Unmodified 1019.4501 0.45011648 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.047 43.94 2 0.00059316 21414 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.02 123.91 749900000 43167000 47033000 47434000 0 0 0 52670000 57508000 58805000 0 0 0 57970000 55265000 45691000 6793300 3448900 7254700 89228000 93761000 83871000 0 0 0 6561 197 6397 121757;121758;121759;121760;121761;121762;121763;121764;121765;121766;121767;121768;121769;121770;121771 74666;74667;74668;74669;74670;74671;74672;74673;74674;74675;74676;74677 74669 12 FTAAEFR Unmodified 840.413 0.41300269 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.559 21.672 2 0.0012423 8267 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 133.47 92.549 1440300000 0 0 0 738760 927280 1255000 159710000 159560000 135860000 0 0 0 130150000 111000000 123420000 0 0 0 197540000 209080000 209460000 674280 487910 472150 6562 58 6398 121772;121773;121774;121775;121776;121777;121778;121779;121780;121781;121782;121783;121784;121785;121786 74678;74679 74679 2 FTAEGVQEIDYK Unmodified 1398.6667 0.66671078 370 P0A7T7 rpsR 30S ribosomal protein S18 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 1 1 2 1 1 1 2 3 2 3 4 1 1 1 29.678 28.239 2 6.0466E-12 12733 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 193.83 181.22 2804800000 441170000 423500000 352770000 4367100 4538300 4272800 134090000 135520000 139740000 19828000 14879000 13775000 191600000 200970000 159660000 0 0 0 268980000 270450000 0 8901200 8213200 7596500 6563 370 6399 121787;121788;121789;121790;121791;121792;121793;121794;121795;121796;121797;121798;121799;121800;121801;121802;121803;121804;121805;121806;121807;121808;121809;121810;121811;121812;121813;121814;121815;121816;121817 74680;74681;74682;74683;74684;74685;74686;74687;74688;74689;74690;74691;74692;74693;74694;74695;74696;74697;74698;74699;74700;74701;74702;74703;74704;74705;74706;74707;74708;74709 74690 28 FTAEGVQEIDYKDIATLK Unmodified 2040.0415 0.041537049 370 P0A7T7 rpsR 30S ribosomal protein S18 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 1 1 1 1 2 40.239 38.539 2;3 2.9106E-17 15249 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 133.86 132.21 280080000 0 0 0 18656000 28756000 25138000 0 0 0 41555000 30715000 32158000 0 0 0 10565000 10159000 12863000 0 0 0 18527000 24346000 26637000 6564 370 6400 121818;121819;121820;121821;121822;121823;121824;121825;121826;121827;121828;121829;121830;121831;121832;121833;121834;121835 74710;74711;74712;74713;74714;74715;74716;74717;74718;74719 74713 10 FTAHTWYR Unmodified 1080.5141 0.51411372 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 2 2 1 1 2 2 1 2 2 2 17.608 18.338 2;3 0.0010066 6397 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 113.89 90.87 204940000 5691300 16888000 17256000 0 0 0 0 22886000 17906000 0 0 0 18871000 19533000 16243000 0 0 0 22114000 21008000 26544000 0 0 0 6565 1246 6401 121836;121837;121838;121839;121840;121841;121842;121843;121844;121845;121846;121847;121848;121849;121850;121851;121852;121853 74720;74721;74722;74723 74723 3 FTALFDAHHMNIAELVSR Unmodified 2071.0309 0.030929558 524 P0A9I3 gcvR Glycine cleavage system transcriptional repressor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.541 44.101 3;4 6.1392E-10 21524 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 124.68 123.97 618360000 71232000 73251000 60852000 0 0 0 54513000 47612000 50901000 0 0 0 41039000 41567000 30653000 0 0 0 46987000 52779000 46975000 0 0 0 6566 524 6402 121854;121855;121856;121857;121858;121859;121860;121861;121862;121863;121864;121865;121866;121867;121868;121869;121870;121871;121872;121873;121874;121875;121876;121877 74724;74725;74726;74727;74728;74729;74730;74731;74732;74733;74734;74735;74736 74727 12 FTALGPYIR Unmodified 1036.5706 0.57056597 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.098 33.595 2 5.0332E-06 11077 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 173.59 168.86 4941000000 220590000 199440000 171160000 3626100 3257100 2748500 116560000 124570000 131540000 2796000 2914500 2997000 128450000 148410000 132380000 1377200000 849520000 926680000 124270000 137110000 128990000 2082700 2189100 1544100 6567 1247 6403 121878;121879;121880;121881;121882;121883;121884;121885;121886;121887;121888;121889;121890;121891;121892;121893;121894;121895;121896;121897;121898;121899;121900;121901 74737;74738;74739;74740;74741;74742;74743;74744;74745;74746;74747;74748;74749;74750;74751;74752;74753;74754 74738 18 FTAQGADAEQALK Unmodified 1348.6623 0.6622941 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.954 21.173 2 7.0713E-06 8731 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.67 118.95 701200000 56735000 48920000 49486000 6148000 7039400 8329700 42509000 51724000 51438000 0 0 0 64365000 59957000 54768000 0 1257000 1595300 58026000 63421000 60986000 4449700 3626400 6422600 6568 1748 6404 121902;121903;121904;121905;121906;121907;121908;121909;121910;121911;121912;121913;121914;121915;121916;121917;121918;121919;121920;121921 74755;74756;74757;74758;74759;74760;74761;74762;74763;74764;74765;74766;74767;74768;74769;74770;74771 74755 17 FTATSSLLR Unmodified 994.54475 0.54474515 796 P0ADP2 yigI Uncharacterized protein YigI yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 26.585 25.475 2 0.083646 10857 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 52.255 49.011 75641000 29701000 0 22087000 436930 0 478150 0 0 0 0 0 0 9899000 0 8697400 0 0 0 0 0 0 1563400 1383900 1394300 6569 796 6405 121922;121923;121924;121925;121926;121927;121928;121929;121930 74772 74772 0 FTDAQGNQHEGIITSGTFSPTLGYSIALAR Unmodified 3151.5574 0.55744168 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 1 2 1 2 1 48.712 47.352 3;4 1.4764E-53 23388 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 232.18 227.33 817040000 44850000 39219000 37744000 0 0 0 97790000 102870000 95460000 0 0 0 69823000 53376000 63412000 0 0 0 72843000 79426000 60224000 0 0 0 6570 1294 6406 121931;121932;121933;121934;121935;121936;121937;121938;121939;121940;121941;121942;121943;121944;121945;121946;121947;121948 74773;74774;74775;74776;74777;74778;74779;74780;74781;74782;74783;74784;74785 74774 13 FTDEDEQGLR Unmodified 1208.5309 0.53094558 1846 P76270 msrC Free methionine-R-sulfoxide reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.555 17.29 2 1.9704E-12 5805 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 214.9 210.92 1217000000 153440000 130010000 135990000 0 0 1659900 89564000 92435000 76217000 0 0 0 82612000 78536000 76435000 0 0 0 98730000 92199000 107160000 0 0 2061700 6571 1846 6407 121949;121950;121951;121952;121953;121954;121955;121956;121957;121958;121959;121960;121961;121962 74786;74787;74788;74789;74790;74791;74792;74793;74794 74794 9 FTDGENGEEING Unmodified 1280.5157 0.51568944 310 P0A746 msrB Peptide methionine sulfoxide reductase MsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.444 21.606 2 2.0107E-05 8368 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 122.52 122.52 225620000 37461000 27183000 30313000 2014200 1886100 1923200 0 6777500 6047700 0 0 0 20825000 18165000 15269000 0 0 0 13520000 19937000 19516000 1564900 1773600 1447900 6572 310 6408 121963;121964;121965;121966;121967;121968;121969;121970;121971;121972;121973;121974;121975;121976;121977;121978;121979 74795;74796;74797;74798;74799;74800;74801;74802 74802 8 FTDMHQWICDLEDFDDDPQASNEK Unmodified 2955.1964 0.1963525 1040 P0C0L9 iscX Protein IscX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.65 52.211 3 1.233E-22 25545 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 176.88 176.88 921060000 71207000 62433000 69679000 0 0 0 52412000 57844000 63762000 0 0 0 86796000 75068000 67172000 0 0 0 95315000 116440000 102930000 0 0 0 6573 1040 6409 121980;121981;121982;121983;121984;121985;121986;121987;121988;121989;121990;121991 74803;74804;74805;74806;74807;74808;74809;74810;74811;74812;74813;74814 74807 12 FTDMIDGQTITR Oxidation (M) 1412.6606 0.66057954 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 3 1 1 1 2 1 8 8 10 3 7 7 8 1 2 2 8 8 8 29.138 27.865 2 1.4633E-12 10501 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 201.33 187.56 2021100000 16018000 5950900 12550000 844090 907640 964260 11811000 0 5418200 221640000 158070000 210230000 0 8587600 0 268640000 179020000 199470000 6513100 11667000 13139000 284880000 194640000 210080000 6574 458 6410 121992;121993;121994;121995;121996;121997;121998;121999;122000;122001;122002;122003;122004;122005;122006;122007;122008;122009;122010;122011;122012;122013;122014;122015;122016;122017;122018;122019;122020;122021;122022;122023;122024;122025;122026;122027;122028;122029;122030;122031;122032;122033;122034;122035;122036;122037;122038;122039;122040;122041;122042;122043;122044;122045;122046;122047;122048;122049;122050;122051;122052;122053;122054;122055;122056;122057;122058;122059;122060;122061;122062;122063;122064;122065;122066;122067;122068;122069;122070;122071;122072;122073;122074;122075;122076;122077;122078;122079;122080;122081;122082;122083;122084;122085 74815;74816;74817;74818;74819;74820;74821;74822;74823;74824;74825;74826;74827;74828;74829;74830;74831;74832;74833;74834;74835;74836;74837;74838;74839;74840;74841;74842;74843;74844;74845;74846;74847;74848;74849;74850;74851;74852;74853;74854;74855;74856;74857;74858;74859;74860;74861;74862;74863;74864;74865;74866;74867;74868;74869;74870;74871;74872;74873;74874;74875;74876;74877;74878;74879;74880;74881;74882;74883;74884;74885;74886;74887;74888;74889;74890;74891;74892;74893;74894;74895;74896;74897;74898;74899;74900;74901;74902;74903 74849 227 84 FTDMIDGQTITR Unmodified 1396.6657 0.66566492 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 1 2 1 5 5 5 2 2 2 5 8 7 3 3 3 5 7 7 32.278 30.96 1;2;3 3.7935E-23 11495 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 229.17 186.09 21367000000 480700000 493990000 442600000 11617000 15747000 13158000 272600000 250340000 251290000 3240400000 2591800000 2058300000 318040000 314430000 302960000 774580000 499760000 521580000 412820000 444910000 400670000 2428600000 2212400000 2613300000 6575 458 6410 122086;122087;122088;122089;122090;122091;122092;122093;122094;122095;122096;122097;122098;122099;122100;122101;122102;122103;122104;122105;122106;122107;122108;122109;122110;122111;122112;122113;122114;122115;122116;122117;122118;122119;122120;122121;122122;122123;122124;122125;122126;122127;122128;122129;122130;122131;122132;122133;122134;122135;122136;122137;122138;122139;122140;122141;122142;122143;122144;122145;122146;122147;122148;122149;122150;122151;122152;122153;122154;122155;122156;122157;122158;122159;122160;122161;122162;122163;122164;122165;122166;122167;122168;122169;122170 74904;74905;74906;74907;74908;74909;74910;74911;74912;74913;74914;74915;74916;74917;74918;74919;74920;74921;74922;74923;74924;74925;74926;74927;74928;74929;74930;74931;74932;74933;74934;74935;74936;74937;74938;74939;74940;74941;74942;74943;74944;74945;74946;74947;74948;74949;74950;74951;74952;74953;74954;74955;74956;74957;74958;74959;74960;74961;74962;74963;74964;74965;74966 74937 52 FTDNVNQTQSDKPVENPGIAAR Unmodified 2400.167 0.16696535 958 P0AFP4 ybbO Uncharacterized oxidoreductase YbbO yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.775 20.869 3 0.00012803 6785 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 75.358 72.349 93869000 0 0 0 0 0 0 13558000 0 10915000 6848000 5610800 5580500 4069000 4873000 2227200 0 912000 0 7764900 9884300 10561000 3461900 3900900 3702300 6576 958 6411 122171;122172;122173;122174;122175;122176;122177;122178;122179;122180;122181;122182;122183;122184;122185 74967;74968;74969;74970;74971;74972 74968 6 FTDVNGETK Unmodified 1009.4716 0.47163978 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.422 12.781 2 4.3905E-11 2835 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 203.93 202.47 547150000 0 49716000 57688000 0 0 0 15966000 0 0 2271900 1805700 363460 0 0 0 154770000 110220000 114260000 0 40078000 0 0 0 0 6577 729 6412 122186;122187;122188;122189;122190;122191;122192;122193;122194;122195 74973;74974;74975;74976;74977;74978 74974 4 FTEGAFK Unmodified 798.3912 0.39120462 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.95 17.569 2 0.0021148 6376 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.01 81.454 9475400000 1537000000 1472300000 0 0 0 0 702760000 698760000 613950000 1217500 0 736050 484600000 403990000 449440000 0 0 0 1051400000 1064000000 995290000 0 0 0 6578 179 6413 122196;122197;122198;122199;122200;122201;122202;122203;122204;122205;122206;122207;122208 74979;74980;74981;74982;74983;74984;74985;74986;74987;74988 74980 10 FTEGAFKDWGYQLAR Unmodified 1787.8631 0.86311917 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 39.275 37.509 3 0.00022178 13213 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 67.136 63.102 20206000 0 0 0 5655900 5781100 5115300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3653200 6579 179 6414 122209;122210;122211;122212 74989;74990;74991 74990 2 FTEVGYVGK Unmodified 998.5073 0.50729701 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.347 21.283 2 0.0008931 6719 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 98.523 88.536 513560000 0 0 0 36531000 34461000 31831000 7808100 0 1525800 27318000 44920000 40672000 99996000 96230000 0 0 0 7337100 0 0 0 34621000 23789000 26519000 6580 245 6415 122213;122214;122215;122216;122217;122218;122219;122220;122221;122222;122223;122224;122225;122226 74992;74993;74994;74995;74996;74997;74998;74999;75000;75001;75002 74996 10 FTEVGYVGKEVDSIIR Unmodified 1810.9465 0.94651445 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 36.324 35.038 3;5 0.00013623 13537 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 71.08 70.836 23487000 0 0 0 4269900 3868400 3312300 0 0 5278100 0 0 0 0 0 0 0 0 1716700 0 0 0 1554600 1268400 2218900 6581 245 6416 122227;122228;122229;122230;122231;122232;122233;122234 75003;75004;75005 75004 2 FTEVTDVVLITR Unmodified 1391.766 0.76603089 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 43.067 41.728 2 3.9143E-08 20299 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 159.83 159.83 64433000 26357000 19714000 18362000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6582 71 6417 122235;122236;122237 75006;75007;75008 75007 3 FTFDNNYFSDR Unmodified 1424.5997 0.59969384 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 40.567 38.899 2 2.9045E-14 18079 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 211.52 211.52 1756300000 80400000 79433000 74434000 546230 0 0 167420000 169130000 177840000 0 0 0 133810000 112750000 115200000 0 0 0 235350000 208110000 201930000 0 0 0 6583 1491 6418 122238;122239;122240;122241;122242;122243;122244;122245;122246;122247;122248;122249;122250 75009;75010;75011;75012;75013;75014;75015;75016;75017;75018;75019;75020 75020 12 FTFTPPQGVTVDDQR Unmodified 1706.8264 0.82639932 1637 P61316 lolA Outer-membrane lipoprotein carrier protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 38.746 37.141 2;3 3.2818E-12 18380 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 197.31 191.59 966450000 82221000 64945000 71319000 0 0 0 78182000 75701000 71485000 0 0 0 86758000 78358000 86125000 0 0 0 92466000 92258000 86636000 0 0 0 6584 1637 6419 122251;122252;122253;122254;122255;122256;122257;122258;122259;122260;122261;122262;122263;122264;122265;122266;122267;122268;122269;122270;122271 75021;75022;75023;75024;75025;75026;75027;75028;75029;75030;75031;75032;75033 75021 13 FTGANTLEVEGENGK Unmodified 1564.7369 0.73691561 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 4 4 3 3 3 3 2 2 2 2 1 3 1 2 2 3 3 3 2 2 3 23.794 22.955 2;3 2.129E-56 9808 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 297.83 296.46 7793400000 198240000 207360000 177030000 898380000 1058800000 1253900000 196560000 189100000 167850000 136040000 100360000 116050000 123660000 110290000 118950000 24395000 13245000 14355000 218270000 261290000 232950000 678390000 600650000 697220000 6585 542 6420 122272;122273;122274;122275;122276;122277;122278;122279;122280;122281;122282;122283;122284;122285;122286;122287;122288;122289;122290;122291;122292;122293;122294;122295;122296;122297;122298;122299;122300;122301;122302;122303;122304;122305;122306;122307;122308;122309;122310;122311;122312;122313;122314;122315;122316;122317;122318;122319;122320;122321;122322;122323;122324;122325;122326;122327;122328;122329;122330;122331 75034;75035;75036;75037;75038;75039;75040;75041;75042;75043;75044;75045;75046;75047;75048;75049;75050;75051;75052;75053;75054;75055;75056;75057;75058;75059;75060;75061;75062;75063;75064;75065;75066;75067;75068;75069;75070;75071;75072;75073;75074;75075;75076;75077;75078;75079;75080;75081;75082;75083;75084;75085;75086;75087;75088;75089;75090 75061 57 FTGANTLEVEGENGKTVINFDNAIIAAGSR Unmodified 3107.5524 0.55235631 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 47.485 45.955 3 6.177E-08 16440 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 94.929 92.872 22044000 0 0 0 6196900 6368200 4983200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2534200 1961800 6586 542 6421 122332;122333;122334;122335;122336 75091;75092;75093 75091 3 FTGDTPEQWLASFR Unmodified 1653.7787 0.77872084 1580 P45795 yrdB Uncharacterized protein YrdB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.018 51.565 2 3.9546E-06 25227 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 117.45 108.03 121850000 14084000 10811000 9480400 0 0 0 5445200 8270200 7607400 0 0 0 10825000 9501600 0 0 0 0 13081000 15254000 17491000 0 0 0 6587 1580 6422 122337;122338;122339;122340;122341;122342;122343;122344;122345;122346;122347;122348 75094;75095;75096;75097;75098;75099 75095 5 FTGEVSLTGQPFVMEPSK Unmodified 1952.9554 0.95536458 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 45.125 43.652 2;3 6.3255E-68 21530 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 314.29 311.34 9040800000 686860000 639770000 636120000 9170400 9314000 10007000 815640000 744600000 731380000 14085000 16393000 14796000 657180000 662650000 604310000 9950700 7289000 5644500 927900000 954580000 855150000 9910000 9226500 8912100 6588 267 6423 122349;122350;122351;122352;122353;122354;122355;122356;122357;122358;122359;122360;122361;122362;122363;122364;122365;122366;122367;122368;122369;122370;122371;122372;122373;122374;122375;122376;122377;122378;122379;122380;122381;122382;122383;122384;122385;122386;122387;122388;122389;122390;122391;122392;122393;122394 75100;75101;75102;75103;75104;75105;75106;75107;75108;75109;75110;75111;75112;75113;75114;75115;75116;75117;75118;75119;75120;75121;75122;75123;75124;75125;75126;75127;75128;75129;75130;75131;75132;75133;75134;75135;75136;75137;75138;75139;75140;75141;75142;75143;75144;75145;75146;75147;75148;75149;75150;75151 75110 52 FTGEVSLTGQPFVMEPSK Oxidation (M) 1968.9503 0.9502792 267 P0A6P1 tsf Elongation factor Ts yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 40.624 38.915 2 3.3365E-17 19477 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 170.95 154.86 191200000 0 6440600 3504600 0 0 0 25100000 20579000 20195000 0 0 0 16888000 14434000 13014000 0 0 0 22801000 25625000 22618000 0 0 0 6589 267 6423 122395;122396;122397;122398;122399;122400;122401;122402;122403;122404;122405;122406;122407;122408;122409;122410;122411;122412;122413;122414 75152;75153;75154;75155;75156;75157;75158;75159;75160;75161;75162;75163;75164;75165;75166;75167;75168;75169 75154 120 18 FTGFVFK Unmodified 844.44833 0.44832557 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.065 34.508 2 0.0066056 16459 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.777 79.14 264660000 22752000 19063000 18822000 0 0 0 19827000 22876000 17091000 0 0 0 20817000 20675000 17699000 0 0 0 26307000 33249000 25483000 0 0 0 6590 346 6424 122415;122416;122417;122418;122419;122420;122421;122422;122423;122424;122425;122426 75170;75171;75172;75173;75174;75175;75176;75177;75178;75179;75180;75181 75175 12 FTGIPNFAPELFR Unmodified 1507.7823 0.78234966 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 2 2 22.633 22.969 2;3 3.049E-11 25730 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 174.98 163.39 82112000 3525600 0 44790000 0 0 0 5528100 4345200 0 0 0 0 0 0 0 0 0 0 7459200 8351900 8112000 0 0 0 6591 346 6425 122427;122428;122429;122430;122431;122432;122433;122434;122435;122436;122437;122438;122439;122440 75182;75183;75184;75185;75186;75187;75188;75189;75190 75186 9 FTGNVIGDIVDAQYK Unmodified 1638.8253 0.82533668 1003 P0AGB0 serB Phosphoserine phosphatase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.063 45.673 2 1.6213E-08 21350 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 142.1 137.12 214620000 14870000 17305000 17407000 0 0 0 14101000 15588000 12289000 0 0 0 18084000 17914000 16704000 0 0 0 22270000 24957000 23134000 0 0 0 6592 1003 6426 122441;122442;122443;122444;122445;122446;122447;122448;122449;122450;122451;122452 75191;75192;75193;75194;75195 75194 5 FTGQVLPTAK Unmodified 1060.5917 0.59169534 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 2 2 1 1 1 22.772 22.239 2 0.00018902 9746 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.28 118.3 11686000000 1260800000 1201600000 1130400000 3247900 4340300 2581700 905790000 855820000 778660000 0 0 0 954020000 931750000 893810000 0 0 0 862990000 893930000 1006200000 0 0 0 6593 271 6427 122453;122454;122455;122456;122457;122458;122459;122460;122461;122462;122463;122464;122465;122466;122467;122468;122469;122470;122471;122472;122473 75196;75197;75198;75199;75200;75201;75202;75203;75204;75205;75206;75207;75208;75209;75210;75211;75212 75196 15 FTGVDRK Unmodified 821.43955 0.43955179 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 10.729 11.344 2 0.00082898 2224 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 148.21 67.829 727960000 38797000 36682000 34873000 22428000 30637000 22441000 24108000 18836000 30299000 35043000 40767000 38897000 16447000 13745000 16107000 61076000 41409000 57061000 18788000 29347000 27618000 22392000 22759000 27406000 6594 990 6428 122474;122475;122476;122477;122478;122479;122480;122481;122482;122483;122484;122485;122486;122487;122488;122489;122490;122491;122492;122493;122494;122495;122496;122497;122498;122499;122500;122501 75213;75214;75215;75216;75217;75218;75219;75220;75221;75222 75213 10 FTGWYDVDLSEK Unmodified 1458.6667 0.66671078 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 1 1 1 1 1 1 2 2 2 1 2 3 1 1 1 43.476 42.009 2 1.7369E-06 20339 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.66 162.41 4234800000 0 627870000 493660000 1952100 2199300 1870100 408050000 407410000 330240000 0 0 0 260040000 283290000 271950000 937880 0 0 406230000 379800000 355940000 0 1490600 1852100 6595 1652 6429 122502;122503;122504;122505;122506;122507;122508;122509;122510;122511;122512;122513;122514;122515;122516;122517;122518;122519;122520;122521;122522;122523;122524;122525;122526;122527;122528;122529 75223;75224;75225;75226;75227;75228;75229;75230;75231;75232;75233;75234;75235;75236;75237;75238;75239;75240;75241;75242;75243;75244;75245;75246;75247;75248;75249;75250;75251;75252;75253;75254;75255;75256;75257;75258 75231 36 FTHAGSYTTTITRPTLFR Unmodified 2069.0694 0.069423554 828 P0AE12 amn AMP nucleosidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 27.508 26.345 3;4 7.8339E-10 11809 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.484 88.643 1169900000 93416000 102040000 91728000 0 2164300 0 107960000 96593000 87665000 0 0 0 80743000 70667000 62593000 0 0 0 125130000 128600000 120610000 0 0 0 6596 828 6430 122530;122531;122532;122533;122534;122535;122536;122537;122538;122539;122540;122541;122542;122543;122544;122545;122546;122547;122548;122549;122550;122551;122552;122553;122554;122555 75259;75260;75261;75262;75263;75264;75265;75266;75267;75268;75269;75270;75271;75272;75273;75274 75271 16 FTHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQK Unmodified 4457.1539 0.15390483 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 3 3 3 3 3 3 49.119 47.763 4;5;6 2.8188E-64 23719 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 228.95 227.92 5684400000 646420000 531460000 492630000 2487500 1880500 2032100 516370000 476740000 429110000 0 0 0 341930000 258190000 373330000 0 0 0 530410000 556010000 525450000 0 0 0 6597 58 6431 122556;122557;122558;122559;122560;122561;122562;122563;122564;122565;122566;122567;122568;122569;122570;122571;122572;122573;122574;122575;122576;122577;122578;122579;122580;122581;122582;122583;122584;122585;122586;122587;122588;122589;122590;122591;122592;122593;122594 75275;75276;75277;75278;75279;75280;75281;75282;75283;75284;75285;75286;75287;75288;75289;75290;75291;75292;75293;75294;75295;75296;75297;75298;75299;75300;75301;75302;75303;75304 75277 30 FTIAASFGNVHGVYK Unmodified 1609.8253 0.8252771 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.706 33.257 3 0.00016668 16207 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 71.879 70.293 819190000 57548000 53181000 44923000 0 0 0 115560000 91635000 102900000 0 0 0 60167000 53196000 48000000 0 0 0 63032000 70622000 58424000 0 0 0 6598 634 6432 122595;122596;122597;122598;122599;122600;122601;122602;122603;122604;122605;122606 75305;75306 75306 1 FTIAASFGNVHGVYKPGNVVLTPTILR Unmodified 2870.5807 0.58068373 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 6 4 2 3 2 5 5 4 2 2 2 4 4 4 4 4 4 1 1 1 46.631 45.086 2;3;4;5 2.5531E-107 22329 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 332.26 328.54 28051000000 2222200000 2398100000 1836400000 9971100 9862700 14764000 2882400000 3148700000 3356600000 12561000 14177000 12677000 1922900000 1488300000 1548000000 0 0 0 2423900000 2342100000 2380400000 9632800 8652700 9070000 6599 634 6433 122607;122608;122609;122610;122611;122612;122613;122614;122615;122616;122617;122618;122619;122620;122621;122622;122623;122624;122625;122626;122627;122628;122629;122630;122631;122632;122633;122634;122635;122636;122637;122638;122639;122640;122641;122642;122643;122644;122645;122646;122647;122648;122649;122650;122651;122652;122653;122654;122655;122656;122657;122658;122659;122660;122661;122662;122663;122664;122665;122666;122667;122668;122669;122670;122671;122672;122673;122674 75307;75308;75309;75310;75311;75312;75313;75314;75315;75316;75317;75318;75319;75320;75321;75322;75323;75324;75325;75326;75327;75328;75329;75330;75331;75332;75333;75334;75335;75336;75337;75338;75339;75340;75341;75342;75343;75344;75345;75346;75347;75348;75349;75350;75351;75352 75319 44 FTIDAFR Unmodified 868.4443 0.44430282 1337 P30126 leuD 3-isopropylmalate dehydratase small subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 35.591 34.083 2 0.0006586 16292 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.28 121.16 263710000 79715000 70782000 65786000 0 0 0 5808900 0 5503200 0 0 0 6838200 7395600 5465600 0 0 0 0 7458600 8961700 0 0 0 6600 1337 6434 122675;122676;122677;122678;122679;122680;122681;122682;122683;122684 75353;75354;75355 75354 3 FTIDCSGVR Unmodified 1053.4913 0.49132937 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.395 24.218 2 3.5179E-08 11013 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 196.25 182.09 874490000 56566000 68076000 55043000 7492000 5703100 6444700 71733000 71206000 71183000 16658000 11093000 6213300 54005000 65600000 47469000 0 0 0 74408000 87013000 80794000 6154400 5792700 5844600 6601 408 6435 122685;122686;122687;122688;122689;122690;122691;122692;122693;122694;122695;122696;122697;122698;122699;122700;122701;122702;122703;122704;122705 75356;75357;75358;75359;75360;75361;75362;75363;75364;75365;75366;75367;75368;75369;75370;75371;75372;75373;75374;75375;75376 75360 21 FTINAEVR Unmodified 948.50288 0.50288033 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 24.895 23.908 2 0.050417 10493 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 64.207 37.245 84526000 23950000 22028000 23226000 0 0 0 8483400 0 0 0 0 0 0 0 0 0 0 0 2523200 0 4315500 0 0 0 6602 1726 6436 122706;122707;122708;122709;122710;122711 75377;75378 75377 0 FTKPVTGGYYFAPSLDK Unmodified 1889.9564 0.95635086 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.153 32.705 2;3 3.248E-14 16012 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.43 173.39 2953900000 169350000 186440000 179230000 0 0 0 332660000 338170000 319840000 0 0 0 235470000 229470000 224120000 0 0 0 231990000 252990000 254210000 0 0 0 6603 1868 6437 122712;122713;122714;122715;122716;122717;122718;122719;122720;122721;122722;122723;122724;122725;122726;122727;122728;122729;122730;122731;122732;122733;122734;122735 75379;75380;75381;75382;75383;75384;75385;75386;75387;75388;75389;75390;75391;75392;75393;75394;75395;75396;75397;75398;75399;75400;75401;75402 75380 24 FTLAALASTGR Unmodified 1106.6084 0.60840804 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.253 36.407 2 4.0558E-15 18112 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.84 208.59 2474500000 249780000 223070000 184860000 1366500 0 0 155720000 164260000 175080000 1548100 1982000 2037500 177140000 166260000 153920000 0 0 0 285750000 263410000 268300000 0 0 0 6604 158 6438 122736;122737;122738;122739;122740;122741;122742;122743;122744;122745;122746;122747;122748;122749;122750;122751 75403;75404;75405;75406;75407;75408;75409;75410;75411;75412;75413;75414 75403 12 FTLADLNIHGK Unmodified 1227.6612 0.66117189 1772 P75791 ybiU Uncharacterized protein YbiU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.731 33.283 3 0.00061109 15921 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 79.07 73.972 120300000 12307000 11998000 10390000 0 0 0 14366000 9481900 10856000 0 0 0 6363100 5596900 5770600 0 0 0 11344000 11346000 10479000 0 0 0 6605 1772 6439 122752;122753;122754;122755;122756;122757;122758;122759;122760;122761;122762;122763 75415;75416;75417;75418;75419;75420;75421;75422;75423;75424;75425;75426 75421 12 FTLLPIFR Unmodified 1005.6011 0.60113781 1357 P31064 yedE UPF0394 inner membrane protein YedE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.837 52.583 2 2.3987E-06 25783 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 185.99 185.99 193210000 13617000 10374000 9291300 1549400 0 0 15094000 9992600 8127900 0 0 2488100 19040000 22316000 18683000 1667000 1836400 0 17350000 20673000 19315000 0 0 1793200 6606 1357 6440 122764;122765;122766;122767;122768;122769;122770;122771;122772;122773;122774;122775;122776;122777;122778;122779;122780 75427;75428;75429;75430;75431 75429 5 FTLLPTCCLGNCDK Unmodified 1697.7575 0.75753317 928 P0AFD1 nuoE NADH-quinone oxidoreductase subunit E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.108 40.225 2 3.017E-14 19571 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.88 179.73 1508300000 72024000 74031000 64771000 2873600 2985600 3725700 93800000 104220000 86229000 7080500 8328600 7673000 154740000 113670000 120680000 0 0 0 185480000 187450000 202660000 6330900 4778900 4816900 6607 928 6441 122781;122782;122783;122784;122785;122786;122787;122788;122789;122790;122791;122792;122793;122794;122795;122796;122797;122798;122799;122800;122801 75432;75433;75434;75435;75436;75437;75438;75439;75440;75441;75442;75443;75444;75445;75446;75447;75448;75449 75445 18 FTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPELLER Unmodified 4508.0943 0.094282735 928 P0AFD1 nuoE NADH-quinone oxidoreductase subunit E yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.045 49.968 5 2.9877E-13 18454 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 108.71 108.67 374680000 0 9206300 5944100 0 44902000 44226000 8319600 7824800 6569800 26108000 0 0 0 0 0 28865000 20290000 31166000 0 20584000 0 43170000 44317000 33190000 6608 928 6442 122802;122803;122804;122805;122806;122807;122808;122809;122810;122811;122812;122813;122814;122815;122816 75450;75451;75452;75453;75454;75455;75456;75457;75458 75452 9 FTLVSAQQLSMAK Unmodified 1422.7541 0.754086 626 P0AB38 lpoB Penicillin-binding protein activator LpoB yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.254 37.685 2 7.0087E-07 15047 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 141.95 115.28 73756000 0 9047500 0 0 0 0 7912200 0 0 7711800 7486200 5534300 0 0 0 2177100 1060500 1261800 10864000 10303000 0 3470700 2945300 3981900 6609 626 6443 122817;122818;122819;122820;122821;122822;122823;122824;122825;122826;122827;122828;122829 75459;75460;75461;75462;75463;75464;75465;75466 75459 8 FTMDEGLSNAVK Unmodified 1310.6177 0.61765209 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.213 30.665 2 2.7043E-06 14408 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.16 131.58 1816800000 182760000 171590000 131050000 0 0 0 150190000 134690000 121170000 2233300 1448100 882070 140040000 113410000 137700000 0 0 0 172720000 183810000 173080000 0 0 0 6610 158 6444 122830;122831;122832;122833;122834;122835;122836;122837;122838;122839;122840;122841;122842;122843;122844 75467;75468;75469;75470;75471;75472;75473;75474;75475;75476;75477 75473 11 FTNPNVK Unmodified 818.42865 0.42865276 588 P0AAC8 iscA Iron-binding protein IscA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.272 13.01 2 0.013921 3736 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.287 76.9 840200000 68480000 70510000 74017000 0 1142900 0 66520000 79476000 65839000 1621100 1400600 1928000 56338000 53416000 51111000 0 0 0 85386000 74614000 88402000 0 0 0 6611 588 6445 122845;122846;122847;122848;122849;122850;122851;122852;122853;122854;122855;122856;122857;122858;122859;122860 75478;75479 75479 2 FTNPNVKDECGCGESFHV Unmodified 2095.8728 0.87277394 588 P0AAC8 iscA Iron-binding protein IscA yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.821 24.574 3 5.6554E-05 10954 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 78.326 78.326 149770000 9232500 9217900 10942000 0 5953800 4124000 9071600 7828000 7792700 7349800 7138800 777970 7266900 6192700 0 0 0 0 12767000 14933000 11709000 7058100 5814400 4603500 6612 588 6446 122861;122862;122863;122864;122865;122866;122867;122868;122869;122870;122871;122872;122873;122874;122875;122876;122877;122878;122879 75480;75481;75482 75480 3 FTNSPLAIYK Unmodified 1152.6179 0.61791009 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.86 30.437 2 0.00059969 14786 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 108.74 100.21 1815600000 0 0 87209000 0 0 0 201530000 178840000 195610000 0 0 1316300 146470000 144540000 131710000 0 0 645000 233020000 252030000 237720000 1954600 1645000 1390300 6613 1491 6447 122880;122881;122882;122883;122884;122885;122886;122887;122888;122889;122890;122891;122892;122893;122894 75483 75483 1 FTNTSGFANK Unmodified 1085.5142 0.5141733 74 P02931 ompF Outer membrane protein F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 14.961 15.383 2 4.4687E-05 3705 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 138.4 135.54 52574000 0 0 0 5111800 5334300 5036500 0 0 0 8486900 7450000 7785400 0 0 0 0 0 0 0 0 0 5088000 4224100 4057100 6614 74 6448 122895;122896;122897;122898;122899;122900;122901;122902;122903 75484;75485;75486;75487;75488;75489;75490;75491;75492 75491 9 FTPESVSR Unmodified 921.4556 0.45559579 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.931 15.464 2 0.00065993 5116 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.57 121.22 1357600000 102600000 94062000 83520000 14853000 11558000 11682000 113920000 104630000 98859000 48181000 39785000 42973000 78831000 74851000 0 42917000 26600000 25951000 93428000 98357000 94875000 26575000 28609000 0 6615 1050 6449 122904;122905;122906;122907;122908;122909;122910;122911;122912;122913;122914;122915;122916;122917;122918;122919;122920;122921;122922;122923;122924;122925;122926 75493;75494;75495;75496;75497;75498;75499;75500;75501;75502;75503;75504;75505;75506;75507;75508;75509;75510 75499 18 FTPHPDLR Unmodified 981.50321 0.50321468 1879 P76621 csiD Protein CsiD yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 14.685 15.384 2 0.12595 5033 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 43.808 32.935 38518000 12992000 14455000 11071000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6616 1879 6450 122927;122928;122929 75511;75512 75512 2 FTPLSQEACR Unmodified 1207.5656 0.56555694 1028 P0AGL5 ratA Ribosome association toxin RatA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 20.101 20.372 2 5.869E-09 7942 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 164.53 154.3 144700000 14404000 8228300 6931800 368660 869220 0 12741000 13259000 14102000 4055300 3391600 2945100 8145900 7901100 6382500 0 0 0 17009000 18602000 0 2469500 2894000 0 6617 1028 6451 122930;122931;122932;122933;122934;122935;122936;122937;122938;122939;122940;122941;122942;122943;122944;122945;122946;122947;122948;122949;122950 75513;75514;75515;75516;75517;75518;75519;75520;75521 75519 9 FTPSPVHDGLHLTAPDGSSAYVR Unmodified 2423.187 0.18697251 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.216 29.86 3;4 2.2472E-07 13537 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 109.75 106.66 571980000 66335000 59711000 55447000 0 0 0 36051000 43622000 45439000 0 0 0 38554000 40439000 29909000 0 0 0 55030000 57912000 43528000 0 0 0 6618 1784 6452 122951;122952;122953;122954;122955;122956;122957;122958;122959;122960;122961;122962;122963;122964;122965;122966;122967;122968;122969;122970;122971;122972;122973;122974 75522;75523;75524;75525;75526;75527;75528;75529;75530;75531;75532;75533;75534;75535;75536;75537;75538;75539;75540;75541 75537 18 FTQAADQR Unmodified 935.44609 0.44609374 1069 P11447 argH Argininosuccinate lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 10.764 11.633 2 0.097129 2852 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 57.047 50.137 51734000 0 0 0 0 0 0 4848400 0 2571600 0 0 0 9144400 6844700 5129100 0 0 0 14346000 8850000 0 0 0 0 6619 1069 6453 122975;122976;122977;122978;122979;122980;122981 75542 75542 0 FTRSQSLNVVER Unmodified 1434.7579 0.75792582 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 1 By MS/MS 1 20.836 21.45 3 0.16309 8128 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 21.23 8.3518 24341000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24341000 0 0 0 0 0 0 0 0 0 6620 865 6454 122982 75543 75543 1 FTSEQAEGNAIYR Unmodified 1484.6896 0.68957148 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.803 21.106 2 5.6498E-40 8441 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 273.79 267.13 185180000 12275000 11877000 12580000 0 0 0 16721000 13649000 15212000 3683100 0 0 13700000 14506000 15060000 0 0 0 18238000 17256000 20421000 0 0 0 6621 1617 6455 122983;122984;122985;122986;122987;122988;122989;122990;122991;122992;122993;122994;122995 75544;75545;75546;75547;75548;75549;75550;75551 75547 6 FTSIGPLMEK Unmodified 1121.5791 0.57908174 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 33.351 32.259 2 0.00049001 14787 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 99.688 96.985 316970000 0 16712000 15828000 0 0 0 0 0 0 7225100 0 0 40873000 41567000 0 6152900 3738000 4302500 60865000 63094000 56609000 0 0 0 6622 205 6456 122996;122997;122998;122999;123000;123001;123002;123003;123004;123005;123006 75552;75553;75554;75555 75554 4 FTSLDQAQR Unmodified 1064.5251 0.52507234 1504 P38051 menF Isochorismate synthase MenF yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.89 16.706 2 0.00016731 5819 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 152.47 141.76 129260000 11069000 11751000 13642000 0 0 0 11216000 8891700 7219200 0 0 0 7756000 7912400 6845500 0 0 0 15186000 13028000 14738000 0 0 0 6623 1504 6457 123007;123008;123009;123010;123011;123012;123013;123014;123015;123016;123017;123018 75556;75557;75558 75557 2 FTSPVTCK Unmodified 938.45315 0.45315295 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.119 16.819 2 0.0027006 5486 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 98.299 93.444 517130000 39673000 44076000 44873000 0 0 0 49579000 48034000 46953000 0 0 0 43372000 32807000 30912000 1448700 0 1025800 49673000 41926000 42777000 0 0 0 6624 1332 6458 123019;123020;123021;123022;123023;123024;123025;123026;123027;123028;123029;123030;123031;123032 75559;75560;75561;75562;75563;75564;75565 75563 6 FTSPVTCKADVDK Unmodified 1466.7075 0.70752973 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 17.933 18.494 3 0.16687 6970 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 17.587 8.0745 144130000 0 0 0 0 0 0 36608000 38124000 32909000 0 0 0 0 0 0 0 0 0 8829300 16231000 11430000 0 0 0 6625 1332 6459 123033;123034;123035;123036;123037;123038 75566 75566 1 FTSVFVTHDQEEATEVADR Unmodified 2180.0022 0.0021914296 1121 P16676 cysA Sulfate/thiosulfate import ATP-binding protein CysA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.602 28.976 3 1.437E-17 10997 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 129.12 125.68 175320000 0 5842600 6341200 0 4299200 0 11701000 10398000 8741600 6442300 7166300 5685000 11752000 10409000 10610000 0 0 0 21583000 21295000 17853000 4583600 6262600 4352700 6626 1121 6460 123039;123040;123041;123042;123043;123044;123045;123046;123047;123048;123049;123050;123051;123052;123053;123054;123055;123056 75567;75568;75569;75570;75571;75572;75573;75574;75575 75568 3 FTSWMGGDR Unmodified 1055.4495 0.44946455 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.224 26.076 2 0.0005527 12269 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.29 107.29 696960000 110070000 108370000 97186000 0 0 0 48148000 50587000 50122000 0 0 0 39912000 32071000 29610000 0 0 0 45484000 43229000 42178000 0 0 0 6627 43 6461 123057;123058;123059;123060;123061;123062;123063;123064;123065;123066;123067;123068 75576;75577;75578;75579;75580;75581;75582;75583;75584;75585;75586;75587 75576 12 FTSWMGGDRDGNPNVTADITR Unmodified 2309.0495 0.049492748 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.313 32.865 3 2.1838E-10 15624 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.01 120.48 191920000 27874000 23123000 20675000 0 0 0 16665000 17784000 16541000 0 0 0 8571500 9761300 7405400 0 0 0 12678000 16168000 14673000 0 0 0 6628 43 6462 123069;123070;123071;123072;123073;123074;123075;123076;123077;123078;123079;123080 75588;75589;75590;75591;75592;75593;75594;75595;75596 75594 8 FTTEEEIDYTIELVR Unmodified 1856.9044 0.90437487 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 2 2 1 2 2 2 2 2 1 53.621 52.185 2;3 1.5165E-11 25496 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 176.78 162.97 280170000 40208000 32148000 12566000 0 1877500 0 22715000 19196000 5769600 0 0 0 24250000 25324000 20820000 0 0 0 32107000 31966000 11219000 0 0 0 6629 228 6463 123081;123082;123083;123084;123085;123086;123087;123088;123089;123090;123091;123092;123093;123094;123095;123096;123097;123098;123099;123100;123101;123102;123103 75597;75598;75599;75600;75601;75602;75603;75604 75601 8 FTTFEVAELVMPR Unmodified 1538.7803 0.78030075 419 P0A8D0 nrdR Transcriptional repressor NrdR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 54.608 53.125 2 1.2097E-07 25918 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.11 152.5 98965000 32731000 0 23632000 0 0 0 0 0 17754000 0 2792600 0 0 0 0 0 0 0 22055000 0 0 0 0 0 6630 419 6464 123104;123105;123106;123107;123108 75605;75606;75607 75607 2 FTTHPNPNVGCVIVK Unmodified 1681.861 0.86101068 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 23.538 22.817 2;3 5.624E-07 9442 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 82.651 81.805 670850000 66713000 57455000 52885000 0 0 0 63387000 64999000 57238000 0 0 0 46570000 45610000 48707000 0 0 0 58661000 53811000 54815000 0 0 0 6631 1262 6465 123109;123110;123111;123112;123113;123114;123115;123116;123117;123118;123119;123120;123121;123122;123123;123124;123125;123126;123127;123128;123129;123130;123131;123132 75608;75609;75610;75611;75612;75613;75614;75615;75616;75617;75618;75619;75620;75621;75622;75623 75620 16 FTTIHIQELACVSR Unmodified 1673.8559 0.85592531 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 6 5 1 1 3 4 3 18 25 27 4 4 9 39 29 31 6 6 5 24 25 26 42.853 41.626 2;3;4 3.6567E-35 11183 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 262 251.21 36807000000 199290000 184200000 146530000 0 0 0 193730000 176940000 25783000 1976100000 1879700000 1795600000 201810000 201600000 202330000 6801200000 6318300000 6500000000 264010000 263860000 252640000 2953000000 3184700000 3085900000 6632 463 6466 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75682 334 FTTSHPIEFTDDIIEVYR Unmodified 2182.0582 0.058249746 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 46.104 44.65 2;3 1.9928E-22 21875 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 182.15 178.92 1548900000 127180000 127120000 124470000 5376000 5651000 5212600 96247000 83459000 92072000 13333000 11411000 10373000 114110000 116210000 113470000 6426600 6162400 5586500 152470000 157960000 151280000 9560700 5133400 8581500 6633 862 6467 123441;123442;123443;123444;123445;123446;123447;123448;123449;123450;123451;123452;123453;123454;123455;123456;123457;123458;123459;123460;123461;123462;123463;123464;123465;123466;123467;123468;123469;123470;123471;123472;123473;123474;123475;123476 75979;75980;75981;75982;75983;75984;75985;75986;75987;75988;75989;75990;75991;75992;75993;75994;75995;75996;75997 75987 19 FTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDR Unmodified 4260.1015 0.10151813 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 54.822 53.403 5 1.9458E-07 19596 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 73.266 72.102 57176000 0 0 0 7915000 8651000 9345800 0 0 0 6606400 7169700 6435900 0 0 0 0 0 0 0 0 0 4850500 0 6201400 6634 862 6468 123477;123478;123479;123480;123481;123482;123483;123484 75998 75998 1 FTVLDALQLGYK Unmodified 1366.7497 0.74965254 1180 P21369 pncA Pyrazinamidase/nicotinamidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.124 52.684 2 7.6758E-07 26070 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 178.22 167.96 321580000 34775000 31338000 29191000 0 0 0 15693000 14299000 15931000 0 0 0 28839000 27570000 24682000 0 0 0 31034000 33974000 34251000 0 0 0 6635 1180 6469 123485;123486;123487;123488;123489;123490;123491;123492;123493;123494;123495;123496 75999;76000;76001;76002;76003;76004;76005;76006;76007;76008;76009 76004 11 FTVLISPHVNK Unmodified 1253.7132 0.71320746 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 27.215 26.003 2;3 3.905E-10 11612 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.76 154.56 9821500000 1310900000 1271600000 1105400000 56432000 72868000 80190000 515520000 509680000 455530000 114090000 159030000 175470000 448330000 393750000 479720000 65138000 49122000 51566000 810170000 676440000 670300000 124690000 119480000 106010000 6636 365 6470 123497;123498;123499;123500;123501;123502;123503;123504;123505;123506;123507;123508;123509;123510;123511;123512;123513;123514;123515;123516;123517;123518;123519;123520;123521;123522;123523;123524;123525;123526;123527;123528;123529;123530;123531;123532;123533;123534;123535;123536;123537;123538;123539;123540;123541;123542;123543;123544;123545 76010;76011;76012;76013;76014;76015;76016;76017;76018;76019;76020;76021;76022;76023;76024;76025;76026;76027;76028;76029;76030;76031;76032;76033;76034;76035;76036;76037;76038;76039;76040;76041;76042;76043;76044;76045;76046;76047;76048;76049;76050;76051;76052;76053;76054;76055;76056 76050 47 FTVLISPHVNKDAR Unmodified 1595.8784 0.87837531 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 22.621 22.026 3;4 0.0059141 6803 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 56.527 54.034 141020000 0 0 0 9563800 19191000 13770000 0 0 0 6823000 7746400 9059100 0 0 0 9250500 9657000 9842000 0 0 0 16069000 15012000 15037000 6637 365 6471 123546;123547;123548;123549;123550;123551;123552;123553;123554;123555;123556;123557;123558;123559;123560;123561;123562;123563;123564;123565;123566 76057;76058;76059;76060;76061;76062;76063;76064;76065;76066;76067;76068;76069;76070;76071;76072 76072 16 FTVPQQTAVSQR Unmodified 1360.7099 0.709913 1539 P39410 yjjJ Putative kinase YjjJ yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 22.28 21.914 2 0.00037838 9303 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.06 88.292 23957000 4758500 4049200 4448600 0 0 0 0 0 0 0 0 0 4080800 3564000 3056100 0 0 0 0 0 0 0 0 0 6638 1539 6472 123567;123568;123569;123570;123571;123572 76073;76074 76073 2 FTYSYQFGLFDK Unmodified 1514.7082 0.70818166 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.401 47.369 2 1.7593E-06 16954 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 171.85 169.91 2593200000 72204000 69686000 58443000 2446000 3168500 2877700 0 0 73946000 0 0 0 86833000 73022000 76362000 826820000 531420000 536730000 57247000 64511000 57511000 0 0 0 6639 1247 6473 123573;123574;123575;123576;123577;123578;123579;123580;123581;123582;123583;123584;123585;123586;123587;123588 76075;76076;76077;76078;76079;76080;76081;76082;76083;76084;76085;76086;76087;76088;76089;76090;76091;76092 76078 18 FVADALAK Unmodified 833.4647 0.46470391 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By MS/MS 1 22.546 22.145 2 0.0041594 9398 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 82.671 28.615 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6640 1979 6474 123589 76093 76093 1 FVAEETR Unmodified 850.41848 0.418482 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.28 13.094 2 0.0012711 2776 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 132.96 114.3 249450000 0 30496000 28363000 5613500 4650300 5105200 27093000 0 22264000 0 0 0 21327000 20316000 0 0 0 0 24582000 26303000 29945000 1467300 1924500 0 6641 740 6475 123590;123591;123592;123593;123594;123595;123596;123597;123598;123599;123600;123601;123602;123603 76094;76095;76096 76096 3 FVAGFIGSPK Unmodified 1021.5597 0.55966693 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 2 2 2 1 2 2 1 1 2 2 2 2 1 2 32.349 30.82 1;2 2.6035E-05 11891 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 146.81 142.13 1187200000 9995600 11582000 9243100 4011200 4316300 2796500 84917000 71204000 69876000 78657000 75959000 60833000 68054000 60861000 62456000 9390300 0 9118400 113930000 131130000 117230000 48460000 38000000 45139000 6642 1718 6476 123604;123605;123606;123607;123608;123609;123610;123611;123612;123613;123614;123615;123616;123617;123618;123619;123620;123621;123622;123623;123624;123625;123626;123627;123628;123629;123630;123631;123632;123633;123634;123635;123636;123637;123638 76097;76098;76099;76100;76101;76102;76103;76104;76105;76106;76107;76108;76109;76110;76111;76112;76113;76114;76115;76116;76117 76100 20 FVAQHPNHTGR Unmodified 1262.6269 0.62685207 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 9.767 10.59 2;3 0.00033496 2513 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.397 81.313 217960000 24428000 18887000 18460000 0 0 0 26061000 3190800 0 0 0 0 20770000 0 12905000 0 0 0 32137000 32409000 28710000 0 0 0 6643 849 6477 123639;123640;123641;123642;123643;123644;123645;123646;123647;123648 76118;76119 76119 2 FVCNDGSISASK Unmodified 1283.5816 0.58160094 753 P0ACW4 ydcA Uncharacterized protein YdcA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.963 16.503 2 1.8616E-05 5704 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 123.63 121.57 141920000 3347100 0 0 0 0 0 23835000 25567000 22594000 0 1161000 0 13843000 10009000 10915000 2082800 1533200 1281200 7159200 8068700 8678300 1068800 781260 0 6644 753 6478 123649;123650;123651;123652;123653;123654;123655;123656;123657;123658;123659;123660;123661;123662;123663;123664 76120;76121;76122 76122 3 FVDEAFEQK Unmodified 1111.5186 0.51858998 323 P0A7A5 pcm Protein-L-isoaspartate O-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.755 22.961 2 0.00019484 9807 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 127.02 121.36 100590000 15661000 13340000 14228000 0 0 0 5764200 5596200 5384400 0 0 0 0 5898500 6993200 0 0 0 9519500 8694600 9511800 0 0 0 6645 323 6479 123665;123666;123667;123668;123669;123670;123671;123672;123673;123674;123675;123676 76123;76124;76125;76126;76127;76128;76129;76130;76131 76128 9 FVDEEVLPGTGLDAAAFWR Unmodified 2092.0266 0.026555687 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.709 53.261 2 8.5459E-32 26146 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 225.79 218.25 519850000 94646000 105380000 88325000 0 0 0 32621000 21116000 22747000 0 0 0 17458000 18488000 18870000 0 0 0 33189000 28890000 38118000 0 0 0 6646 1465 6480 123677;123678;123679;123680;123681;123682;123683;123684;123685;123686;123687;123688 76132;76133;76134;76135;76136 76136 5 FVDEHTLALDCPDGSVETLTAEK Unmodified 2546.1846 0.18464883 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 1 2 1 2 2 2 1 1 1 39.247 37.435 2;3 3.0553E-53 18088 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 312.02 311.19 2160200000 315710000 323950000 284380000 8406200 8661400 7024100 81635000 94574000 101740000 9677800 4469200 6836700 85426000 86901000 78391000 0 0 0 214740000 210860000 215010000 8389500 7003900 6373300 6647 1302 6481 123689;123690;123691;123692;123693;123694;123695;123696;123697;123698;123699;123700;123701;123702;123703;123704;123705;123706;123707;123708;123709;123710;123711;123712;123713;123714;123715;123716;123717;123718;123719 76137;76138;76139;76140;76141;76142;76143;76144;76145;76146;76147;76148;76149;76150;76151;76152;76153;76154;76155;76156;76157 76154 21 FVDLIEIDAASR Unmodified 1347.7034 0.70343063 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.973 44.357 2 9.5995E-05 21930 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 113.93 109.68 117200000 8132800 11366000 9174300 1209300 587630 873650 8256500 7520400 7616600 5037500 4406900 3841400 5907500 7145000 6994300 0 0 0 9929600 8183400 11018000 0 0 0 6648 127 6482 123720;123721;123722;123723;123724;123725;123726;123727;123728;123729;123730;123731;123732;123733;123734;123735;123736;123737 76158;76159;76160 76160 3 FVDPNLLVGNETR Unmodified 1472.7623 0.7623425 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 1 1 1 1 2 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38.857 37.164 2;3 8.3342E-08 18294 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 155.97 151.67 893420000 4010600 159950000 6019500 5592700 4071300 4241900 209260000 193270000 190030000 17867000 17154000 19503000 6182400 0 7251900 4857200 1755400 2008000 6573900 5731400 4985700 7918700 7244600 7942100 6649 1119 6483 123738;123739;123740;123741;123742;123743;123744;123745;123746;123747;123748;123749;123750;123751;123752;123753;123754;123755;123756;123757;123758;123759;123760;123761;123762;123763;123764;123765;123766 76161;76162;76163;76164;76165;76166;76167;76168;76169 76166 9 FVDVEITDVYPNSLR Unmodified 1765.8887 0.88866522 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.407 46.3 2 2.4023E-11 22576 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 161.99 144.29 468760000 40911000 33294000 30018000 0 0 0 31042000 30568000 29341000 0 0 0 35923000 32887000 30789000 8532700 4281200 6444000 44740000 55242000 54746000 0 0 0 6650 862 6484 123767;123768;123769;123770;123771;123772;123773;123774;123775;123776;123777;123778;123779;123780;123781 76170;76171;76172;76173;76174;76175;76176;76177;76178;76179;76180;76181;76182 76176 13 FVEAEGFSVVR Unmodified 1238.6295 0.62953741 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 34.335 32.853 2 5.2824E-05 15709 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.86 108.72 1466500000 147670000 146640000 122850000 0 0 0 117400000 119640000 113380000 0 0 0 88267000 86576000 90019000 0 0 0 145610000 140010000 147150000 0 1258500 0 6651 829 6485 123782;123783;123784;123785;123786;123787;123788;123789;123790;123791;123792;123793;123794 76183;76184;76185;76186;76187;76188;76189;76190;76191;76192;76193;76194 76189 12 FVEFYGDGLDSLPLADR Unmodified 1912.9207 0.92069363 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 1 1 2 52.922 51.496 2;3 1.191E-18 25416 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 220.9 216.59 1800700000 465870000 434160000 388490000 0 0 0 104970000 100380000 102730000 0 0 0 23704000 20449000 18581000 0 0 0 45409000 43730000 52285000 0 0 0 6652 1254 6486 123795;123796;123797;123798;123799;123800;123801;123802;123803;123804;123805;123806;123807;123808;123809;123810;123811;123812;123813;123814;123815 76195;76196;76197;76198;76199;76200;76201;76202;76203;76204;76205;76206;76207;76208 76202 13 FVEGGQLGIFR Unmodified 1221.6506 0.6506072 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 40.016 37.949 2 2.2789E-07 18792 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.99 151.76 183460000 0 0 0 0 0 0 55877000 50282000 49324000 5272500 4591000 4959600 4380700 4533300 4238600 0 0 0 0 0 0 0 0 0 6653 722 6487 123816;123817;123818;123819;123820;123821;123822;123823;123824 76209;76210;76211;76212 76210 2 FVESVDVAVNLGIDAR Unmodified 1702.889 0.88899957 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 2 2 1 1 53.313 51.932 2 3.1038E-08 25428 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.23 145.58 86133000 11209000 27262000 0 0 0 0 0 0 0 0 0 0 3734100 4232500 8883500 0 0 0 14423000 9183300 7205100 0 0 0 6654 353 6488 123825;123826;123827;123828;123829;123830;123831;123832;123833;123834 76213;76214 76213 1 FVETVAALAHHEGMGAR Unmodified 1794.8835 0.88353704 1257 P25524 codA Cytosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 25.866 24.867 3;4 6.6849E-07 11156 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.544 88.701 176530000 62535000 54948000 59047000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6655 1257 6489 123835;123836;123837;123838;123839;123840 76215;76216;76217;76218;76219 76216 5 FVFAEGIAYGPEMAAK Unmodified 1699.828 0.82797922 1551 P41407 azoR FMN-dependent NADH-azoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 2 2 1 2 1 47.114 45.73 2;3 3.6374E-08 22753 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 152.55 146.58 431910000 48242000 52212000 51010000 0 0 0 44985000 32214000 32220000 0 0 0 26219000 25911000 28144000 0 0 0 30137000 30463000 30149000 0 0 0 6656 1551 6490 123841;123842;123843;123844;123845;123846;123847;123848;123849;123850;123851;123852;123853;123854;123855;123856;123857;123858;123859;123860 76220;76221;76222;76223;76224;76225;76226;76227;76228;76229;76230;76231;76232 76220 13 FVFIGAGGAALK Unmodified 1149.6546 0.65462995 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 40.343 38.704 2 0.0002458 15179 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 87.639 83.654 326000000 3724700 3528300 4036600 3875900 4213100 3443700 10116000 9283600 7578500 13449000 8700200 10879000 12068000 11469000 10742000 6421200 3223500 3874700 39427000 38612000 37346000 25495000 25362000 29131000 6657 1435 6491 123861;123862;123863;123864;123865;123866;123867;123868;123869;123870;123871;123872;123873;123874;123875;123876;123877;123878;123879;123880;123881;123882;123883;123884;123885 76233;76234;76235;76236;76237;76238;76239;76240;76241;76242;76243;76244;76245;76246;76247;76248;76249 76240 12 FVGAVSIDSLK Unmodified 1134.6285 0.62847478 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 35.974 34.464 2 0.0001445 13536 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 111.61 89.521 160800000 0 0 0 0 0 0 0 0 0 0 20974000 20020000 0 34227000 0 0 3625600 0 0 81954000 0 0 0 0 6658 1094 6492 123886;123887;123888;123889;123890;123891;123892;123893;123894;123895 76250;76251;76252;76253;76254;76255;76256;76257 76250 8 FVGDFFKSR Unmodified 1101.5607 0.56072956 1987 yes yes 0 0 1 By MS/MS 1 11.543 11.455 3 0.16224 2394 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 22.086 0.62242 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 6659 1987 6493 123896 76258 76258 1 FVGEEVTLVLR Unmodified 1260.7078 0.70778773 415 P0A8A8 rimP Ribosome maturation factor RimP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.168 42.653 2 0.00012626 19983 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.84 107.17 287870000 19374000 23949000 19630000 0 0 0 31997000 28247000 23982000 0 0 0 24782000 20986000 22005000 0 0 0 25915000 22761000 24241000 0 0 0 6660 415 6494 123897;123898;123899;123900;123901;123902;123903;123904;123905;123906;123907;123908 76259;76260;76261;76262;76263;76264;76265;76266;76267;76268;76269;76270 76268 12 FVGINQAGQVALLQTQGNPDGHVILR Unmodified 2744.4722 0.47219591 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 43.732 42.221 3 2.8741E-61 21049 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 266.01 262.74 340200000 29512000 22376000 23982000 0 0 0 45312000 40505000 37046000 0 0 0 26648000 20523000 23400000 0 0 0 0 33533000 37360000 0 0 0 6661 45 6495 123909;123910;123911;123912;123913;123914;123915;123916;123917;123918;123919 76271;76272;76273;76274;76275;76276;76277 76271 7 FVGSLTSDQQK Unmodified 1208.6037 0.60371659 759 P0ACZ4 evgA Positive transcription regulator EvgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.68 18.374 2 1.3766E-20 6638 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 230.7 165.45 446790000 0 0 0 715180 980930 0 71350000 68602000 65442000 0 0 0 33965000 30485000 29047000 0 0 0 55279000 45700000 45226000 0 0 0 6662 759 6496 123920;123921;123922;123923;123924;123925;123926;123927;123928;123929;123930;123931;123932;123933 76278;76279;76280;76281;76282;76283;76284;76285;76286;76287;76288;76289 76286 12 FVGTATAGTDHVDEAWLK Unmodified 1916.9268 0.92684164 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 2 2 1 1 1 32.497 31.211 2;3 1.8933E-23 14586 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 233.59 229.91 667240000 14686000 129840000 19075000 0 0 0 19721000 16844000 18481000 0 0 0 138320000 137740000 121570000 0 0 0 17390000 16912000 16651000 0 0 0 6663 111 6497 123934;123935;123936;123937;123938;123939;123940;123941;123942;123943;123944;123945;123946;123947;123948;123949 76290;76291;76292;76293;76294;76295;76296;76297;76298;76299;76300;76301;76302 76297 13 FVGVAGPR Unmodified 801.44972 0.44972255 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 18.318 18.499 2 0.001099 5797 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 111.69 103.53 33980000 0 0 0 2613900 3704200 0 0 0 0 8420100 4794100 0 0 0 0 0 0 0 0 0 0 4898100 5375000 4174900 6664 1058 6498 123950;123951;123952;123953;123954;123955;123956 76303;76304 76303 1 FVHYCPR Unmodified 977.45416 0.454156 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.482 13.294 2 0.0075261 3937 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 90.939 85.401 300830000 17899000 20651000 20825000 0 0 0 30076000 31160000 28726000 0 0 0 29761000 0 29598000 0 0 0 33522000 29787000 28827000 0 0 0 6665 1500 6499 123957;123958;123959;123960;123961;123962;123963;123964;123965;123966;123967 76305 76305 1 FVIACGSR Unmodified 908.45382 0.45382165 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.212 19.682 2 0.00091102 7163 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.93 103.35 896940000 142240000 121780000 110230000 919000 0 0 41686000 43868000 38910000 0 1319100 1622200 43236000 38690000 36564000 0 0 0 90781000 98116000 86969000 0 0 0 6666 1302 6500 123968;123969;123970;123971;123972;123973;123974;123975;123976;123977;123978;123979;123980;123981;123982 76306;76307;76308;76309;76310;76311;76312;76313;76314;76315 76313 6 FVIACGSRPYHPTDVDFTHPR Unmodified 2471.1804 0.18044734 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 2 2 1 1 1 2 26.77 25.675 4;5 0.002502 9611 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 56.327 53.715 100350000 0 0 0 9731300 9072100 10397000 0 0 0 11026000 5513700 11922000 0 0 0 8917200 4603500 4294900 2138500 4722300 7677100 0 10332000 0 6667 1302 6501 123983;123984;123985;123986;123987;123988;123989;123990;123991;123992;123993;123994;123995;123996;123997;123998;123999;124000;124001;124002;124003;124004 76316;76317;76318;76319;76320;76321;76322;76323 76317 8 FVIADYFINK Unmodified 1228.6492 0.64921022 1289 P27128 rfaI Lipopolysaccharide 1,3-galactosyltransferase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 49.356 47.874 2 0.0018305 23601 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.452 76.721 52206000 0 0 0 0 0 615730 0 7960700 8981600 5521300 3602300 4634300 0 0 0 0 0 0 7796800 7247500 0 2786900 1532400 1526400 6668 1289 6502 124005;124006;124007;124008;124009;124010;124011;124012;124013;124014;124015 76324;76325;76326;76327 76326 3 FVIGGPMGDCGLTGR Unmodified 1535.7225 0.72246829 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.319 38.707 2 1.1025E-11 17943 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 171.92 168.95 5640000000 509970000 464080000 435900000 9694900 11874000 9525200 554030000 553360000 548150000 37730000 34387000 34300000 367190000 381310000 346500000 4199600 2483900 2460900 430830000 460010000 422730000 6012500 5461900 7809800 6669 388 6503 124016;124017;124018;124019;124020;124021;124022;124023;124024;124025;124026;124027;124028;124029;124030;124031;124032;124033;124034;124035;124036;124037;124038;124039 76328;76329;76330;76331;76332;76333;76334;76335;76336;76337;76338;76339;76340;76341;76342;76343;76344;76345;76346;76347;76348;76349 76349 22 FVIGGPMGDCGLTGR Oxidation (M) 1551.7174 0.71738291 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1 34.733 33.199 2 8.8105E-06 16057 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.5 92.372 88576000 0 7814100 5860100 0 0 0 34271000 35861000 0 0 0 0 0 0 0 0 0 0 0 0 4769800 0 0 0 6670 388 6503 124040;124041;124042;124043;124044;124045;124046;124047 76350;76351;76352;76353;76354 76351 172 5 FVIGGPMGDCGLTGRK Unmodified 1663.8174 0.81743131 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 32.031 30.312 3 1.9159E-07 11576 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 86.378 85.011 31981000 0 0 0 2175500 1644000 2133700 4856700 7541500 0 3721200 0 3055200 0 2855300 0 0 0 0 0 3997700 0 0 0 0 6671 388 6504 124048;124049;124050;124051;124052;124053;124054;124055;124056;124057 76355;76356;76357 76356 3 FVISLCHGPAAFLALR Unmodified 1770.9603 0.9603308 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 50.302 48.863 2;3 1.8823E-08 23696 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143 130.73 163470000 60141000 43774000 47718000 653320 0 0 3527800 3067300 4589700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6672 1373 6505 124058;124059;124060;124061;124062;124063;124064;124065;124066;124067 76358;76359;76360;76361;76362 76362 5 FVIVCDDDVNAR Unmodified 1421.6609 0.66091389 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.976 29.399 2 3.5798E-05 13776 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 111.65 91.89 251130000 29578000 29829000 23797000 2808900 2956900 3001900 17304000 0 16204000 5683100 4356800 3814800 11596000 14160000 13087000 0 0 0 19404000 21224000 23173000 4297900 4857900 0 6673 582 6506 124068;124069;124070;124071;124072;124073;124074;124075;124076;124077;124078;124079;124080;124081;124082;124083;124084;124085;124086;124087 76363;76364;76365;76366;76367;76368;76369;76370;76371;76372;76373;76374;76375;76376;76377;76378;76379 76370 11 FVKHPIYGK Unmodified 1087.6179 0.61785051 989 P0AG63 rpsQ 30S ribosomal protein S17 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.735 12.058 3 0.056815 2590 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 40.882 32.395 70335000 0 0 0 0 9174000 11205000 0 0 0 4983000 5068700 3578800 0 0 0 4428900 7432200 5972000 0 0 0 7222800 6161600 5107700 6674 989 6507 124088;124089;124090;124091;124092;124093;124094;124095;124096;124097;124098 76380;76381;76382;76383 76381 4 FVLADVK Unmodified 790.45889 0.45889025 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.522 26.375 2 0.0063618 11372 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 95.793 56.975 791860000 55148000 54516000 48944000 0 0 0 67799000 68485000 65472000 0 0 0 65393000 61174000 71636000 0 0 0 82253000 79871000 71169000 0 0 0 6675 1889 6508 124099;124100;124101;124102;124103;124104;124105;124106;124107;124108;124109;124110 76384;76385;76386;76387;76388;76389;76390 76390 7 FVLAGAK Unmodified 704.42211 0.42211082 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 18.897 19.486 2 0.011921 7709 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.306 10.475 614010000 92808000 80195000 59605000 0 0 0 71606000 69062000 0 0 0 0 35213000 37143000 28533000 0 0 0 51934000 42364000 45551000 0 0 0 6676 1233 6509 124111;124112;124113;124114;124115;124116;124117;124118;124119;124120;124121 76391;76392;76393;76394;76395;76396;76397;76398;76399;76400 76391 10 FVLDWVR Unmodified 933.50724 0.50723743 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46 44.512 2 0.0023834 18270 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 113.25 97.62 219300000 14376000 21612000 16304000 2353100 3130600 1383200 10041000 8913600 9271300 11033000 11987000 12023000 8061600 7697800 8235200 3025500 0 2593400 16381000 14925000 15890000 5821300 7772900 6466900 6677 78 6510 124122;124123;124124;124125;124126;124127;124128;124129;124130;124131;124132;124133;124134;124135;124136;124137;124138;124139;124140;124141;124142;124143;124144 76401;76402;76403;76404;76405;76406;76407;76408 76401 8 FVLGFAQSTVEK Unmodified 1324.7027 0.70270235 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 2 1 38.9 37.247 2 4.3273E-08 18356 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.66 155.85 859560000 36913000 26631000 34046000 0 0 0 164280000 150790000 159510000 0 0 0 66185000 59554000 58357000 0 0 0 31529000 36076000 35694000 0 0 0 6678 554 6511 124145;124146;124147;124148;124149;124150;124151;124152;124153;124154;124155;124156;124157;124158 76409;76410;76411;76412;76413;76414;76415;76416;76417;76418;76419;76420;76421;76422 76413 14 FVLLTSGATVADYNDAPADAQQSEVLK Unmodified 2822.3974 0.39741879 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 1 2 2 2 48.012 46.585 2;3 1.3966E-52 22741 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 230.82 216.13 622790000 12002000 41062000 37554000 0 0 0 60437000 56327000 49876000 0 0 0 54685000 45595000 38750000 0 0 0 73784000 83271000 69446000 0 0 0 6679 58 6512 124159;124160;124161;124162;124163;124164;124165;124166;124167;124168;124169;124170;124171;124172;124173;124174;124175;124176;124177;124178;124179;124180 76423;76424;76425;76426;76427;76428;76429;76430;76431;76432;76433;76434;76435;76436;76437;76438;76439 76429 17 FVLMNTEGQDCGFNGGEMTLSLADR Unmodified 2761.2146 0.21458552 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 51.989 50.739 3 8.859E-07 23800 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 98.121 97.317 76363000 0 0 12021000 0 0 0 11064000 14598000 0 0 0 0 13318000 12185000 13177000 0 0 0 0 0 0 0 0 0 6680 158 6513 124181;124182;124183;124184;124185;124186 76440;76441;76442 76442 3 FVLNQPANAR Unmodified 1128.604 0.60399136 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 20.953 21.056 2;3 2.9833E-06 7998 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 157.21 152.22 3565900000 3483600 3535600 4625200 0 0 0 228710000 309260000 370420000 31722000 48695000 35405000 384090000 370220000 338280000 3289500 3220400 3275900 424860000 482980000 458560000 20674000 17655000 22928000 6681 1442 6514 124187;124188;124189;124190;124191;124192;124193;124194;124195;124196;124197;124198;124199;124200;124201;124202;124203;124204;124205;124206;124207;124208;124209 76443;76444;76445;76446;76447;76448;76449;76450;76451;76452;76453;76454;76455;76456;76457;76458;76459;76460 76459 15 FVLNQPANARPK Unmodified 1353.7517 0.75171823 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 16.677 17.111 2;3 7.2989E-07 6235 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.52 162.22 1002600000 0 0 0 6157800 1006200 761310 58293000 54185000 50572000 166340000 73184000 30264000 11740000 11167000 11372000 73668000 54605000 58215000 52975000 61688000 14517000 42240000 49434000 120170000 6682 1442 6515 124210;124211;124212;124213;124214;124215;124216;124217;124218;124219;124220;124221;124222;124223;124224;124225;124226;124227;124228;124229;124230;124231;124232;124233;124234;124235;124236;124237;124238;124239;124240;124241;124242;124243;124244;124245 76461;76462;76463;76464;76465;76466;76467;76468;76469;76470;76471;76472;76473;76474;76475;76476;76477;76478;76479;76480;76481;76482;76483;76484;76485;76486;76487;76488;76489;76490 76472 28 FVMGYWR Unmodified 957.45309 0.45309337 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.306 35.632 2 0.0013909 17232 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.84 130.84 341330000 46407000 45072000 37994000 0 0 0 27082000 21801000 24965000 0 0 0 20114000 20232000 18045000 0 0 0 24208000 29467000 25945000 0 0 0 6683 1830 6516 124246;124247;124248;124249;124250;124251;124252;124253;124254;124255;124256;124257 76491;76492;76493;76494;76495;76496;76497;76498;76499;76500;76501;76502 76497 12 FVMPGAALNEDEFR Unmodified 1594.745 0.74497787 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 44.375 42.86 2;3 5.7556E-11 21157 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 204.5 199.71 1561700000 112140000 109310000 89180000 0 0 0 244150000 230220000 224260000 0 0 0 103260000 91334000 79645000 0 0 0 93915000 99187000 85057000 0 0 0 6684 145 6517 124258;124259;124260;124261;124262;124263;124264;124265;124266;124267;124268;124269;124270;124271;124272;124273;124274;124275;124276;124277;124278;124279;124280;124281 76503;76504;76505;76506;76507;76508;76509;76510;76511;76512;76513;76514;76515;76516;76517;76518 76507 16 FVNGVLDK Unmodified 890.48617 0.48616764 316 P0A780 nusB N utilization substance protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.635 21.754 2 0.057849 8991 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 58.119 45.123 5650000000 571010000 496920000 412650000 2030800 2300900 2917000 0 0 630880000 0 0 0 693450000 0 0 0 0 0 966200000 962450000 909200000 0 0 0 6685 316 6518 124282;124283;124284;124285;124286;124287;124288;124289;124290;124291;124292 76519;76520;76521;76522;76523;76524;76525;76526;76527;76528 76519 10 FVNILMVDGK Unmodified 1134.6107 0.61071622 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 42.807 41.214 2 8.7686E-05 19008 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 131.62 126.18 5026000000 771390000 794220000 659100000 11181000 9756800 8862700 183560000 197520000 197580000 24292000 24968000 29306000 292510000 260100000 252250000 19326000 10301000 11517000 404340000 424450000 402980000 12739000 13838000 9944100 6686 67 6519 124293;124294;124295;124296;124297;124298;124299;124300;124301;124302;124303;124304;124305;124306;124307;124308;124309;124310;124311;124312;124313;124314;124315;124316;124317;124318;124319;124320;124321;124322;124323;124324;124325;124326;124327;124328 76529;76530;76531;76532;76533;76534;76535;76536;76537;76538;76539;76540;76541;76542;76543;76544;76545;76546;76547 76545 19 FVNILMVDGK Oxidation (M) 1150.6056 0.60563084 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 2 1 1 1 1 1 2 1 1 2 1 1 1 1 38.219 36.757 2 0.00034477 17591 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 84.213 79.457 132360000 41246000 30521000 25832000 642970 719960 667480 0 0 0 11390000 0 0 4658000 13424000 0 1290500 517320 0 0 0 0 0 269890 1179000 6687 67 6519 124329;124330;124331;124332;124333;124334;124335;124336;124337;124338;124339;124340;124341;124342;124343;124344;124345 76548;76549;76550;76551;76552;76553;76554;76555 76548 31 8 FVNILMVDGKK Unmodified 1262.7057 0.70567924 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 1 1 1 2 2 32.15 30.565 2;3 0.00013761 11723 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 91.937 91.937 166320000 0 0 0 9993000 11909000 11128000 0 0 0 30732000 17331000 9313100 0 0 0 10999000 10642000 10082000 0 0 0 9946100 16702000 17540000 6688 67 6520 124346;124347;124348;124349;124350;124351;124352;124353;124354;124355;124356;124357;124358;124359;124360;124361;124362;124363;124364 76556;76557;76558;76559;76560;76561;76562;76563;76564;76565;76566;76567;76568;76569;76570;76571;76572 76561 17 FVPAALVEAILNSPR Unmodified 1595.9035 0.90352742 609 P0AAS0 ylaC Inner membrane protein YlaC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 55.466 54.002 2;3 7.345E-27 25549 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 227.94 227.94 699830000 2423300 4926200 4359800 1286400 1339600 1301100 30735000 24050000 27710000 17566000 21705000 20194000 65851000 60621000 57386000 0 0 0 86005000 92526000 91824000 32990000 28053000 26979000 6689 609 6521 124365;124366;124367;124368;124369;124370;124371;124372;124373;124374;124375;124376;124377;124378;124379;124380;124381;124382;124383;124384;124385;124386;124387;124388;124389;124390;124391;124392;124393;124394;124395;124396;124397;124398;124399;124400;124401;124402 76573;76574;76575;76576;76577;76578;76579;76580;76581;76582;76583;76584;76585;76586;76587;76588;76589;76590;76591;76592 76591 20 FVPDTQAPLGIR Unmodified 1312.7139 0.71393574 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.473 33.007 2 1.9425E-06 15772 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.16 133.94 3393600000 318680000 323960000 315090000 1911800 1807300 2069400 205600000 193160000 183680000 3426100 2520400 0 297080000 283960000 267730000 2106700 1673600 0 303400000 346860000 337510000 0 1413100 0 6690 161 6522 124403;124404;124405;124406;124407;124408;124409;124410;124411;124412;124413;124414;124415;124416;124417;124418;124419;124420;124421;124422 76593;76594;76595;76596;76597;76598;76599;76600;76601;76602;76603;76604;76605;76606;76607 76602 9 FVPHELSHEEILQLIDNFAR Unmodified 2406.2332 0.23319442 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 52.555 51.338 4 8.5443E-05 25310 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 71.685 70.112 90243000 34903000 25755000 26605000 0 0 0 0 0 0 0 0 0 2980000 0 0 0 0 0 0 0 0 0 0 0 6691 1554 6523 124423;124424;124425;124426 76608;76609;76610 76608 3 FVPHFIALSAASPYMQGTDTR Unmodified 2308.131 0.13103753 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 44.461 43.121 3 2.7399E-15 21003 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.77 107.08 99841000 35342000 31247000 33251000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6692 1887 6524 124427;124428;124429 76611;76612 76611 2 FVQAYQSDEVYEAANK Unmodified 1860.853 0.853008 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 1 1 1 28.386 26.872 2;3 2.6622E-08 9021 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 149.38 145.79 91857000 0 2562300 0 15190000 13127000 12533000 0 0 0 0 22570000 3161200 0 0 0 0 0 0 0 0 0 7514600 8180000 7018800 6693 1321 6525 124430;124431;124432;124433;124434;124435;124436;124437;124438;124439;124440;124441 76613;76614;76615;76616;76617;76618;76619;76620;76621;76622;76623 76618 11 FVQQFGNQLAK Unmodified 1278.6721 0.67207093 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.871 24.745 2 6.7959E-05 10923 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 153.78 135.63 521730000 34086000 31516000 30179000 1940400 2630500 1943900 39904000 37045000 33209000 7863900 8645000 7173700 39981000 37595000 31597000 2351900 0 2928300 53155000 44142000 47425000 9985800 8250100 8181100 6694 1197 6526 124442;124443;124444;124445;124446;124447;124448;124449;124450;124451;124452;124453;124454;124455;124456;124457;124458;124459;124460;124461;124462;124463;124464 76624;76625;76626;76627;76628;76629;76630;76631;76632;76633;76634;76635;76636;76637;76638;76639;76640 76636 16 FVQTNMGR Unmodified 951.45964 0.45963531 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.044 14.91 2 0.00044231 4755 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.85 122.7 309180000 29316000 29424000 24566000 0 0 0 33096000 30127000 30411000 0 0 0 18820000 22629000 20259000 0 0 0 27622000 23457000 19451000 0 0 0 6695 154 6527 124465;124466;124467;124468;124469;124470;124471;124472;124473;124474;124475;124476 76641;76642;76643;76644;76645;76646;76647 76646 6 FVSFNINGLR Unmodified 1165.6244 0.62439245 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.612 40.277 2 5.7336E-07 19713 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 174.27 174.27 186990000 14728000 15122000 18084000 0 0 0 13661000 11112000 11632000 0 0 0 14041000 13101000 14257000 6684900 3957600 3349000 13659000 18088000 15511000 0 0 0 6696 197 6528 124477;124478;124479;124480;124481;124482;124483;124484;124485;124486;124487;124488;124489;124490;124491 76648;76649;76650;76651;76652;76653;76654;76655;76656;76657 76651 10 FVSQGELVR Unmodified 1033.5556 0.55564418 737 P0ACN4 allR HTH-type transcriptional repressor AllR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.682 20.863 2 0.00061972 8141 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.57 89.365 234860000 50803000 41021000 37695000 0 0 0 12556000 0 12806000 1509500 972680 1640300 8693000 8919500 6062400 9545800 8439400 7210700 13414000 13574000 0 0 0 0 6697 737 6529 124492;124493;124494;124495;124496;124497;124498;124499;124500;124501;124502;124503;124504;124505;124506;124507;124508;124509 76658;76659;76660;76661;76662;76663;76664;76665;76666;76667;76668 76666 11 FVSTSYSRGPR Unmodified 1255.6309 0.63093439 3 CON__ENSEMBL:ENSBTAP00000038253 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 17.047 17.522 3 0.15688 6853 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 22.686 12.733 1314800000 43889000 39755000 34390000 0 0 0 173070000 174560000 175910000 22268000 19059000 14784000 88181000 71319000 73122000 0 3430500 4786000 136950000 110250000 121830000 4333300 0 2882900 + 6698 3 6530 124510;124511;124512;124513;124514;124515;124516;124517;124518;124519;124520;124521;124522;124523;124524;124525;124526;124527;124528;124529;124530;124531;124532;124533;124534;124535;124536;124537;124538;124539;124540;124541;124542;124543;124544 76669;76670;76671;76672;76673;76674;76675;76676;76677 76673 9 FVSVTYGANSGER Unmodified 1385.6575 0.65754307 898 P0AEZ1 metF 5,10-methylenetetrahydrofolate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 22.658 21.928 2 6.0539E-05 9444 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.549 89.016 48316000 4465800 3519500 4368000 0 0 0 11001000 8447200 8984300 1588000 1628900 1403300 0 0 0 0 0 0 0 2909700 0 0 0 0 6699 898 6531 124545;124546;124547;124548;124549;124550;124551;124552;124553;124554 76678;76679;76680 76680 0 FVTAYLGDAGMLR Unmodified 1412.7122 0.71222118 1212 P23827 eco Ecotin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 3 3 3 1 1 1 2 2 2 2 2 2 1 1 1 44.394 42.72 2;3 4.6414E-07 20774 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 182.46 165.24 2224500000 192650000 186820000 168640000 3665800 3744300 4672400 216780000 200280000 208690000 6838800 5354000 4171000 160730000 141260000 149620000 0 0 0 190160000 192900000 173420000 4542200 5210000 4309900 6700 1212 6532 124555;124556;124557;124558;124559;124560;124561;124562;124563;124564;124565;124566;124567;124568;124569;124570;124571;124572;124573;124574;124575;124576;124577;124578;124579;124580;124581;124582;124583;124584;124585;124586;124587;124588;124589;124590 76681;76682;76683;76684;76685;76686;76687;76688;76689;76690;76691;76692;76693;76694;76695;76696;76697;76698;76699;76700;76701;76702;76703;76704;76705;76706;76707;76708;76709;76710 76701 28 FVTDFEQQTGMEIYQPGTK Unmodified 2218.0252 0.025235058 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 44.024 42.382 2 1.5564E-22 20930 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 240.42 237.46 66625000 0 0 0 0 0 0 17850000 16415000 13166000 0 0 0 7274900 6182200 5737600 0 0 0 0 0 0 0 0 0 6701 1861 6533 124591;124592;124593;124594;124595;124596 76711;76712 76712 2 FVTDLNQPVSVYMTPK Unmodified 1837.9284 0.92842155 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 1 1 1 2 1 1 2 2 2 1 1 43.86 42.178 2;3 1.3811E-30 20538 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 230.59 219.15 3453800000 334860000 321500000 312690000 0 0 2924800 235300000 224410000 190900000 1960600 2706100 3212600 332610000 249930000 239290000 0 0 0 336130000 337440000 315740000 0 6725700 5471200 6702 788 6534 124597;124598;124599;124600;124601;124602;124603;124604;124605;124606;124607;124608;124609;124610;124611;124612;124613;124614;124615;124616;124617;124618;124619;124620;124621;124622;124623 76713;76714;76715;76716;76717;76718;76719;76720;76721;76722;76723;76724;76725;76726;76727;76728 76719 15 FVVECDGEK Unmodified 1081.475 0.4750106 488 P0A951 speG Spermidine N(1)-acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 16.814 17.546 2 0.015088 6241 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 64.42 61.584 65730000 0 0 0 0 0 0 8513200 9584800 5845500 0 0 0 4904300 0 0 0 0 0 12665000 11733000 12485000 0 0 0 6703 488 6535 124624;124625;124626;124627;124628;124629;124630 76729;76730 76730 2 FVVEGDLR Unmodified 933.49198 0.4919813 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 1 2 2 2 1 1 2 2 2 1 1 1 1 2 2 2 26.068 24.982 2 0.00011523 8937 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 158.12 127.45 4993000000 826080000 669490000 639080000 0 0 0 227060000 214420000 214190000 21555000 20670000 21203000 288410000 280340000 270470000 14125000 10457000 7735500 423130000 452280000 364330000 7035400 10564000 10320000 6704 368 6536 124631;124632;124633;124634;124635;124636;124637;124638;124639;124640;124641;124642;124643;124644;124645;124646;124647;124648;124649;124650;124651;124652;124653;124654;124655;124656;124657;124658;124659;124660;124661;124662;124663 76731;76732;76733;76734;76735;76736;76737;76738;76739;76740;76741;76742;76743;76744;76745;76746;76747;76748;76749;76750;76751;76752;76753;76754;76755;76756;76757;76758 76733 26 FVVEGDLRR Unmodified 1089.5931 0.59309232 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 2 2 2 19.006 19.196 2;3 4.6143E-05 6004 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 122.13 111.9 370140000 3226000 0 0 29245000 22577000 27404000 2537700 3241500 1721900 50830000 42971000 43090000 0 2128000 0 20545000 13986000 16941000 2526800 3252700 2444700 26597000 28212000 26661000 6705 368 6537 124664;124665;124666;124667;124668;124669;124670;124671;124672;124673;124674;124675;124676;124677;124678;124679;124680;124681;124682;124683;124684;124685;124686;124687;124688;124689;124690;124691;124692;124693;124694;124695 76759;76760;76761;76762;76763;76764;76765;76766;76767;76768;76769;76770;76771;76772 76763 14 FVVMPGR Unmodified 804.43163 0.43162964 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.517 23.529 2 0.0023936 10377 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.07 113.07 1203500000 133340000 123740000 117070000 1673000 1400700 1507900 93430000 102320000 102090000 10155000 11821000 10701000 69863000 56629000 62995000 0 1162200 0 96860000 94997000 88421000 8014700 6829200 8515700 6706 1408 6538 124696;124697;124698;124699;124700;124701;124702;124703;124704;124705;124706;124707;124708;124709;124710;124711;124712;124713;124714;124715;124716;124717 76773;76774;76775;76776;76777;76778;76779;76780;76781;76782;76783;76784;76785;76786 76780 13 FVVMPGRDTVVDVQSK Unmodified 1775.924 0.92400487 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.979 29.547 3 0.15524 11053 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 19.39 15.486 95842000 0 0 0 3950600 3561200 3058900 0 0 0 10925000 9617100 12082000 0 0 0 5119800 3569100 3677300 0 0 0 12090000 13661000 14531000 6707 1408 6539 124718;124719;124720;124721;124722;124723;124724;124725;124726;124727;124728;124729 76787 76787 1 FVVPSSHR Unmodified 927.49265 0.49265 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.515 14.152 2 0.00054413 4343 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.47 116.76 649720000 12036000 0 0 1456100 1466600 1438500 56025000 56027000 51445000 9277200 10203000 12284000 41537000 47254000 37627000 7076300 0 0 68451000 59066000 56509000 44713000 37702000 38124000 6708 1067 6540 124730;124731;124732;124733;124734;124735;124736;124737;124738;124739;124740;124741;124742;124743;124744;124745;124746;124747;124748;124749 76788;76789;76790;76791;76792;76793;76794 76791 5 FVVQYATDSMTSQGK Unmodified 1660.7767 0.77667193 77 P02943 lamB Maltoporin yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 31.033 29.688 2;3 9.2977E-09 13831 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 181.68 178.04 307830000 3625600 4044500 3665600 0 0 0 0 3438700 3109400 17345000 18419000 19367000 9830800 11681000 7865300 8266100 7921700 7319700 32040000 35438000 33443000 26335000 26010000 28664000 6709 77 6541 124750;124751;124752;124753;124754;124755;124756;124757;124758;124759;124760;124761;124762;124763;124764;124765;124766;124767;124768;124769;124770;124771;124772;124773;124774;124775;124776;124777;124778;124779;124780;124781;124782;124783 76795;76796;76797;76798;76799;76800;76801;76802;76803;76804;76805;76806;76807;76808;76809;76810;76811 76809 17 FVYISLYR Unmodified 1059.5753 0.57531699 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.195 39.322 2 8.1081E-05 19660 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.89 152.3 220690000 7099400 7338300 6168400 0 0 1132800 27694000 26730000 27146000 6142500 6876200 6327400 10626000 13486000 12524000 0 0 0 19460000 17355000 19148000 2000200 1699200 1736200 6710 27 6542 124784;124785;124786;124787;124788;124789;124790;124791;124792;124793;124794;124795;124796;124797;124798;124799;124800;124801;124802 76812;76813;76814;76815;76816;76817;76818;76819;76820;76821;76822 76814 11 FWAGYSWQDNSDGSGAVRPDR Unmodified 2370.0414 0.041370903 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 36.343 33.879 3 0.14352 13361 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 22.375 22.129 18780000 0 0 0 0 0 0 4822700 0 0 3679100 4194200 6083600 0 0 0 0 0 0 0 0 0 0 0 0 6711 1877 6543 124803;124804;124805;124806 76823 76823 1 FWDESVK Unmodified 909.42323 0.42323303 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.544 22.823 2 0.0023399 10091 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.02 107.64 357110000 57863000 44374000 52248000 0 0 0 33022000 28352000 23429000 0 0 0 18131000 17592000 15642000 0 0 0 18490000 24282000 23688000 0 0 0 6712 235 6544 124807;124808;124809;124810;124811;124812;124813;124814;124815;124816;124817;124818 76824;76825;76826;76827;76828;76829 76826 6 FWDESVKIPAEEVTVR Unmodified 1903.968 0.96797818 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 39.758 37.829 3 0.0015473 14729 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 63.134 59.157 58615000 0 0 0 14914000 12485000 14887000 0 0 0 0 0 2636100 0 0 0 0 0 0 0 0 0 4083500 5125000 4484600 6713 235 6545 124819;124820;124821;124822;124823;124824;124825 76830;76831;76832;76833;76834;76835 76832 6 FWDYQQGSWQEEQQTK Unmodified 2086.9021 0.90208345 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.914 34.357 2;3 1.1651E-49 15861 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 347.7 347.7 1183000000 39055000 42368000 34050000 0 0 0 158120000 192920000 144210000 0 0 0 109760000 119170000 111250000 0 0 0 74724000 83418000 73939000 0 0 0 6714 1806 6546 124826;124827;124828;124829;124830;124831;124832;124833;124834;124835;124836;124837;124838;124839;124840;124841;124842;124843;124844;124845;124846;124847;124848;124849 76836;76837;76838;76839;76840;76841;76842;76843;76844;76845;76846;76847;76848;76849;76850;76851;76852;76853;76854;76855;76856 76853 21 FWGEYSVDGLTVK Unmodified 1499.7296 0.72964538 1537 P39406 rsmC Ribosomal RNA small subunit methyltransferase C yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 45.181 43.879 2 0.00326 21532 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.056 57.498 26047000 8425900 5998100 9612100 0 0 0 0 0 0 0 0 0 0 0 2011300 0 0 0 0 0 0 0 0 0 6715 1537 6547 124850;124851;124852;124853 76857;76858 76857 2 FWHTGNGYTNEPVLR Unmodified 1789.8536 0.85361712 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 27.692 26.564 3 2.2877E-06 12092 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 103.85 99.751 293550000 103070000 98559000 88900000 1134500 857880 1029000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6716 1919 6548 124854;124855;124856;124857;124858;124859 76859;76860;76861 76859 3 FWHVLDASAGK Unmodified 1229.6193 0.61930707 1851 P76329 yedP Putative mannosyl-3-phosphoglycerate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.777 27.445 3 0.00010029 12981 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 83.081 73.974 248400000 64841000 55109000 56638000 0 0 0 20715000 1538000 27200000 0 0 1118200 4279800 3739800 0 0 0 0 4372100 4772500 4077800 0 0 0 6717 1851 6549 124860;124861;124862;124863;124864;124865;124866;124867;124868;124869;124870;124871 76862;76863;76864;76865;76866 76863 5 FWLPAGSFATSVVR Unmodified 1536.8089 0.80889876 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.96 50.694 2 4.8031E-06 24878 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.63 112.03 226270000 23571000 25576000 20915000 0 0 0 16518000 14836000 10343000 0 0 0 18645000 17087000 14844000 0 0 0 17243000 21202000 22768000 1388000 0 1336500 6718 1979 6550 124872;124873;124874;124875;124876;124877;124878;124879;124880;124881;124882;124883;124884;124885 76867;76868;76869;76870;76871;76872;76873;76874;76875;76876 76871 8 FWNQQMK Unmodified 980.45382 0.45382165 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.707 20.197 2 0.04806 7856 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 63.394 56.043 217240000 10822000 8600000 7985700 0 0 0 26233000 25205000 23575000 0 0 0 16192000 16901000 14660000 0 0 0 24768000 21617000 20685000 0 0 0 6719 1421 6551 124886;124887;124888;124889;124890;124891;124892;124893;124894;124895;124896;124897 76877 76877 1 FWPDKEAILYDALR Unmodified 1735.8934 0.89335667 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.881 45.385 3 1.0931E-05 22194 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.717 90.683 155760000 25006000 27043000 20298000 0 1658000 1938200 11360000 10818000 11243000 0 1455500 1208100 6378300 6525700 4807900 0 0 0 8728000 8167600 7535000 0 1590900 0 6720 748 6552 124898;124899;124900;124901;124902;124903;124904;124905;124906;124907;124908;124909;124910;124911;124912;124913;124914 76878;76879;76880;76881;76882;76883;76884;76885;76886;76887;76888 76884 11 FWPHDFTLLAHFR Unmodified 1685.8467 0.84668125 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 46.695 45.242 4 6.1693E-05 22371 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 87.618 83.714 80413000 0 0 3486300 0 0 0 11601000 10070000 10464000 0 0 0 7965200 6080900 6548700 0 0 0 7054500 10029000 7112700 0 0 0 6721 1510 6553 124915;124916;124917;124918;124919;124920;124921;124922;124923;124924 76889;76890;76891;76892;76893;76894;76895;76896;76897;76898;76899;76900;76901 76891 13 FWSGIELSR Unmodified 1093.5556 0.55564418 683 P0ABU9 tolQ Protein TolQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 38.892 37.14 2 0.00030936 17261 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 117.04 111.95 116670000 0 0 0 0 0 0 14420000 13651000 13570000 0 0 0 9317900 9573700 9596900 0 0 0 14849000 16577000 15119000 0 0 0 6722 683 6554 124925;124926;124927;124928;124929;124930;124931;124932;124933 76902;76903;76904;76905;76906;76907;76908;76909;76910 76909 9 FWVESEK Unmodified 923.43888 0.43888309 356 P0A7M2 rpmB 50S ribosomal protein L28 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 23.31 22.515 1;2 3.9573E-08 9139 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 174.21 131.73 2818300000 363950000 327150000 341740000 1400100 1382700 1121800 117260000 104880000 115960000 6787300 5957600 2290700 172220000 179040000 186770000 0 0 0 278870000 301070000 296560000 3571500 4322700 6016200 6723 356 6555 124934;124935;124936;124937;124938;124939;124940;124941;124942;124943;124944;124945;124946;124947;124948;124949;124950;124951;124952;124953;124954;124955;124956;124957;124958;124959;124960;124961;124962;124963;124964;124965;124966 76911;76912;76913;76914;76915;76916;76917 76917 5 FWVESEKR Unmodified 1079.54 0.53999412 356 P0A7M2 rpmB 50S ribosomal protein L28 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 16.586 17.118 2;3 0.00014442 4819 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 158.12 153.76 2431800000 277710000 115710000 93463000 32532000 31100000 30829000 121420000 100720000 92886000 60678000 23057000 15807000 166090000 175620000 169370000 84107000 70803000 74289000 226770000 205010000 165590000 19433000 21585000 57239000 6724 356 6556 124967;124968;124969;124970;124971;124972;124973;124974;124975;124976;124977;124978;124979;124980;124981;124982;124983;124984;124985;124986;124987;124988;124989;124990;124991;124992;124993;124994;124995;124996;124997;124998;124999;125000;125001;125002;125003;125004;125005;125006;125007;125008;125009;125010;125011;125012;125013;125014 76918;76919;76920;76921;76922;76923;76924;76925;76926;76927;76928;76929;76930;76931;76932;76933;76934;76935;76936;76937;76938;76939;76940;76941;76942;76943;76944;76945;76946;76947;76948;76949;76950;76951;76952;76953;76954;76955;76956;76957;76958;76959;76960;76961;76962;76963 76939 46 FYALPQSPQLFK Unmodified 1437.7656 0.76563696 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.234 43.819 2;3 1.6306E-06 21782 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.2 141.47 4241000000 264150000 235180000 223310000 0 0 0 435860000 400770000 400550000 0 0 0 359830000 313800000 317550000 0 0 0 433070000 487230000 369710000 0 0 0 6725 1189 6557 125015;125016;125017;125018;125019;125020;125021;125022;125023;125024;125025;125026;125027;125028;125029;125030;125031;125032;125033;125034;125035;125036;125037;125038 76964;76965;76966;76967;76968;76969;76970;76971;76972;76973;76974;76975;76976;76977 76964 13 FYDAVSTFK Unmodified 1076.5179 0.51786169 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.796 29.2 2 0.00069751 13639 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 103.56 91.794 1683400000 128300000 121150000 113990000 1349200 1064500 1176400 156750000 154590000 159970000 2148800 1679300 1889300 121470000 125680000 107710000 0 0 0 165200000 158770000 153130000 2348000 2396400 2640600 6726 29 6558 125039;125040;125041;125042;125043;125044;125045;125046;125047;125048;125049;125050;125051;125052;125053;125054;125055;125056;125057;125058;125059 76978;76979;76980;76981;76982;76983;76984;76985;76986;76987 76982 10 FYDDMFDELLK Unmodified 1434.6377 0.63771883 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.872 53.407 2 0.00018672 25447 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 106.2 102.18 756790000 46004000 36798000 44013000 0 0 0 65386000 71565000 56723000 0 0 0 81240000 76102000 78160000 0 0 0 73329000 61466000 66008000 0 0 0 6727 1956 6559 125060;125061;125062;125063;125064;125065;125066;125067;125068;125069;125070;125071 76988;76989;76990;76991;76992;76993;76994;76995;76996 76994 9 FYDEQGLCDQLYTHLAQALNR Unmodified 2554.1911 0.19107161 1611 P54901 csiE Stationary phase-inducible protein CsiE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.54 51.225 3 1.0532E-21 20844 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 163.66 162.25 201030000 0 9187600 0 0 0 4942300 19117000 15070000 24966000 11494000 11768000 9460700 11949000 9560600 7349400 0 0 0 17604000 16476000 21335000 6577400 4167300 0 6728 1611 6560 125072;125073;125074;125075;125076;125077;125078;125079;125080;125081;125082;125083;125084;125085;125086;125087 76997;76998;76999;77000 76997 4 FYDKEGMPVVADVDQR Unmodified 1867.8774 0.87744861 1530 P39356 yjhU Uncharacterized transcriptional regulator YjhU yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.395 28.901 3 0.00015693 11004 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 68.257 67.071 50370000 4581200 4321000 5438400 0 0 0 0 3130900 0 4342900 4604900 4451200 2340700 2500200 0 0 0 1491200 0 3647900 4252800 2977300 0 2289500 6729 1530 6561 125088;125089;125090;125091;125092;125093;125094;125095;125096;125097;125098;125099;125100;125101 77001 77001 1 FYDLISALHK Unmodified 1205.6445 0.64445919 619 P0AAZ4 rarA Replication-associated recombination protein A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 39.282 37.606 3 0.00021755 18322 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.48 99.779 64590000 8169100 7338700 5651200 496290 0 0 4629300 5250600 4363100 0 0 0 2830500 3015200 3097300 0 0 0 6307700 7003100 6438100 0 0 0 6730 619 6562 125102;125103;125104;125105;125106;125107;125108;125109;125110;125111;125112;125113;125114 77002;77003 77002 2 FYDVLLVDTAGR Unmodified 1367.7085 0.70851601 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.727 45.375 2 2.4062E-09 18220 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 179.09 167.49 521850000 32013000 33856000 26313000 7682900 5951100 6648900 34252000 30568000 29303000 33063000 27437000 33977000 0 20486000 17964000 6233200 4102900 5749900 44286000 42038000 39413000 12428000 14576000 13505000 6731 1009 6563 125115;125116;125117;125118;125119;125120;125121;125122;125123;125124;125125;125126;125127;125128;125129;125130;125131;125132;125133;125134;125135;125136;125137;125138 77004;77005;77006;77007;77008;77009;77010;77011;77012;77013;77014;77015;77016;77017;77018;77019;77020;77021;77022;77023;77024;77025 77006 21 FYGHLEQTLLATGFIR Unmodified 1864.9836 0.98356866 825 P0AE01 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 48.861 47.513 3 1.2548E-08 23109 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 121.31 119.4 346890000 19700000 19255000 18879000 0 0 0 37417000 33512000 36094000 0 0 0 29800000 27711000 24925000 0 0 0 32730000 37533000 28252000 1079500 0 0 6732 825 6564 125139;125140;125141;125142;125143;125144;125145;125146;125147;125148;125149;125150;125151 77026;77027;77028;77029;77030;77031;77032;77033;77034;77035;77036 77029 9 FYGVQFHPEVTHTR Unmodified 1716.8372 0.83723877 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 3 3 2 2 2 4 3 4 1 1 2 4 4 3 3 4 3 1 2 2 24.269 23.3 2;3;4 2.8852E-26 9697 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 254.34 248.02 6249100000 480830000 349120000 434410000 2793800 3395500 2854600 624700000 610660000 525890000 4150000 3142000 4309000 593710000 477100000 512500000 0 0 0 605230000 549020000 450470000 3262600 5752300 5840700 6733 86 6565 125152;125153;125154;125155;125156;125157;125158;125159;125160;125161;125162;125163;125164;125165;125166;125167;125168;125169;125170;125171;125172;125173;125174;125175;125176;125177;125178;125179;125180;125181;125182;125183;125184;125185;125186;125187;125188;125189;125190;125191;125192;125193;125194;125195;125196;125197;125198;125199;125200;125201;125202;125203;125204;125205;125206;125207;125208 77037;77038;77039;77040;77041;77042;77043;77044;77045;77046;77047;77048;77049;77050;77051;77052;77053;77054;77055;77056;77057;77058;77059;77060;77061;77062;77063;77064;77065;77066;77067;77068 77065 32 FYHDYYGENLFR Unmodified 1622.7154 0.7153923 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 35.252 33.676 3 0.0006226 16416 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 65.879 65.879 60100000 0 0 0 0 0 0 18469000 14428000 19358000 0 0 0 2948100 2391100 2505900 0 0 0 0 0 0 0 0 0 6734 1318 6566 125209;125210;125211;125212;125213;125214 77069;77070;77071 77070 2 FYHEPSDNLR Unmodified 1276.5836 0.58364985 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 15.313 15.994 2;3 0.00023509 5365 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.965 95.826 400380000 48102000 24702000 39528000 725950 873430 725330 36026000 46368000 37323000 0 966500 628660 22490000 20589000 27259000 0 0 0 31957000 31344000 27266000 1117600 1299700 1087700 6735 1192 6567 125215;125216;125217;125218;125219;125220;125221;125222;125223;125224;125225;125226;125227;125228;125229;125230;125231;125232;125233;125234;125235;125236;125237;125238 77072;77073;77074;77075;77076 77076 5 FYLDLADLR Unmodified 1124.5866 0.58660996 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 1 1 1 1 1 1 1 2 50.864 49.531 1;2 1.0489E-07 24019 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.68 182.68 929210000 163310000 182030000 164740000 1157400 0 1404900 55169000 56938000 53434000 0 1149900 1291600 34411000 35608000 31944000 0 0 0 52848000 42133000 51637000 0 0 0 6736 218 6568 125239;125240;125241;125242;125243;125244;125245;125246;125247;125248;125249;125250;125251;125252;125253;125254;125255;125256;125257;125258;125259 77077;77078;77079;77080;77081;77082;77083;77084;77085;77086;77087;77088 77085 11 FYLDVQK Unmodified 911.47527 0.4752686 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.129 26.774 2 0.073803 12331 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.687 43.188 373240000 26587000 26375000 22812000 0 813150 0 30218000 31562000 29752000 1437900 1760300 1243900 27228000 21068000 22203000 0 0 0 41452000 44389000 44339000 0 0 0 6737 1586 6569 125260;125261;125262;125263;125264;125265;125266;125267;125268;125269;125270;125271;125272;125273;125274;125275 77089;77090;77091 77089 3 FYLMPQNVHFEHAAAMFELK Unmodified 2422.1602 0.16022917 1134 P17109 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 47.613 46.217 4 8.5887E-05 22520 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 71.592 68.83 75359000 6417500 6554600 0 0 0 0 8895300 5921000 8290900 0 0 0 11374000 7476200 4874300 0 0 0 0 7524000 8031300 0 0 0 6738 1134 6570 125276;125277;125278;125279;125280;125281;125282;125283;125284;125285 77092 77092 1 FYLSMEDALMR Unmodified 1374.6312 0.63119367 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 49.371 48.152 2 3.879E-11 19223 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 201.07 192.85 1021100000 43739000 40068000 37049000 8851100 9477100 8487900 39175000 40728000 36659000 67811000 71653000 78353000 46491000 47273000 47969000 36033000 31746000 35612000 52861000 60470000 61057000 44177000 41347000 34035000 6739 1057 6571 125286;125287;125288;125289;125290;125291;125292;125293;125294;125295;125296;125297;125298;125299;125300;125301;125302;125303;125304;125305;125306;125307;125308;125309;125310;125311 77093;77094;77095;77096;77097;77098;77099;77100;77101;77102;77103;77104;77105;77106;77107;77108;77109;77110;77111;77112 77098 20 FYNGDCAMTTASSGSLANIR Unmodified 2134.9412 0.94118785 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 34.995 33.506 2;3 3.0076E-68 15992 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 308.84 308.84 3806300000 34414000 29486000 34867000 2824600 2999900 2421700 271640000 260110000 282490000 0 0 0 339540000 337780000 312370000 0 0 0 598700000 677920000 618750000 0 0 0 6740 993 6572 125312;125313;125314;125315;125316;125317;125318;125319;125320;125321;125322;125323;125324;125325;125326;125327;125328;125329;125330;125331;125332;125333;125334;125335;125336;125337;125338;125339;125340;125341 77113;77114;77115;77116;77117;77118;77119;77120;77121;77122;77123;77124;77125;77126;77127;77128;77129;77130;77131;77132;77133;77134 77119 20 FYPHIFVE Unmodified 1050.5175 0.51746776 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.725 39.883 2 0.0029808 19252 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 95.957 91.82 181310000 17522000 15441000 13787000 0 0 0 12556000 9230000 10976000 2445000 2243000 0 10795000 13790000 8059000 0 0 0 19679000 24432000 19047000 0 1313400 0 6741 806 6573 125342;125343;125344;125345;125346;125347;125348;125349;125350;125351;125352;125353;125354;125355;125356 77135;77136;77137;77138;77139;77140;77141;77142;77143;77144;77145;77146;77147 77142 13 FYQFWINTADADVYR Unmodified 1907.8842 0.88424855 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.373 51.126 3 8.4443E-09 25349 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.12 99.741 295250000 17057000 16822000 19161000 0 0 0 24727000 24310000 19765000 0 0 0 24265000 24592000 22439000 0 0 0 26777000 33160000 42176000 0 0 0 6742 1024 6574 125357;125358;125359;125360;125361;125362;125363;125364;125365;125366;125367;125368 77148;77149;77150;77151;77152;77153;77154;77155;77156 77148 8 FYQNWQPAWAPGTQR Unmodified 1848.8696 0.86960153 41 P00811 ampC Beta-lactamase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 40.893 39.377 2 1.4385E-06 19274 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 112.13 89.927 38556000 6938900 5301000 5078800 0 0 0 0 0 0 0 0 0 2070700 3165800 0 0 0 0 5528100 5203000 5270100 0 0 0 6743 41 6575 125369;125370;125371;125372;125373;125374;125375;125376 77157 77157 1 FYRENDPTNSMNPGIGK Unmodified 1938.8894 0.88941028 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.989 21.718 3 8.8909E-07 7422 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 101.53 101.34 89231000 0 0 0 3234200 3052300 2891300 0 0 0 21052000 24828000 17141000 0 0 0 2025100 3161800 3001300 0 0 0 2811800 3041300 2990300 6744 122 6576 125377;125378;125379;125380;125381;125382;125383;125384;125385;125386;125387;125388 77158;77159;77160;77161;77162 77160 5 FYRPLGR Unmodified 907.50282 0.50282075 795 P0ADP0 yigB Flavin mononucleotide phosphatase YigB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.801 15.626 2 0.15261 4910 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 56.026 34.098 45589000 0 3089200 3183800 0 0 0 0 4888400 0 0 0 0 4342800 3382600 1953300 0 0 0 7211300 7073200 10464000 0 0 0 6745 795 6577 125389;125390;125391;125392;125393;125394;125395;125396;125397 77163 77163 1 FYTDGPR Unmodified 854.39227 0.39226725 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.984 15.466 2 0.0006293 5068 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 149.06 144.84 3844200000 0 9713200 0 0 0 0 396380000 366750000 350700000 0 841360 808060 398240000 462330000 359080000 1149700 623260 1274600 508340000 481250000 501580000 1651400 1605900 1907500 6746 1324 6578 125398;125399;125400;125401;125402;125403;125404;125405;125406;125407;125408;125409;125410;125411;125412;125413;125414;125415 77164;77165;77166;77167;77168;77169 77167 6 FYTEEGIFDLVGNNTPIFFIQDAHK Unmodified 2914.4178 0.4177603 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.114 53.64 3 2.1516E-15 26737 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.98 141.84 327480000 47285000 54824000 42312000 0 0 0 33589000 31795000 40362000 0 0 0 8765300 8545700 4655200 0 0 0 17936000 18153000 19254000 0 0 0 6747 1174 6579 125416;125417;125418;125419;125420;125421;125422;125423;125424;125425;125426;125427 77170 77170 1 FYVELHK Unmodified 934.49125 0.49125301 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.521 20.723 2 0.011149 8237 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 86.086 80.326 550070000 39617000 43577000 41965000 1133200 1003800 1183600 38415000 31274000 39656000 1805100 1699000 2275700 60139000 45462000 45051000 0 0 0 47479000 49058000 56664000 1212600 0 1400600 6748 1172 6580 125428;125429;125430;125431;125432;125433;125434;125435;125436;125437;125438;125439;125440;125441;125442;125443;125444;125445;125446;125447 77171;77172;77173;77174;77175;77176 77172 5 FYVINAAK Unmodified 924.5069 0.50690308 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.019 24.03 2 0.0031954 10924 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 94.163 86.451 399240000 28969000 27924000 25632000 0 0 0 41533000 32515000 37709000 0 0 0 30083000 23929000 24052000 0 0 0 40347000 39120000 47424000 0 0 0 6749 1609 6581 125448;125449;125450;125451;125452;125453;125454;125455;125456;125457;125458;125459 77177;77178;77179;77180;77181;77182;77183;77184;77185;77186 77179 10 FYVVVNIAPHNAK Unmodified 1470.7983 0.79833407 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.928 29.5 3 0.00043171 14114 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 69.451 63.369 214140000 18340000 18881000 13631000 0 0 797490 17194000 17379000 22408000 0 0 0 18589000 10667000 9587800 0 0 0 22123000 23193000 19009000 1550700 0 783110 6750 1856 6582 125460;125461;125462;125463;125464;125465;125466;125467;125468;125469;125470;125471;125472;125473;125474 77187;77188;77189;77190;77191;77192;77193;77194;77195;77196;77197 77189 7 FYYNCAPAHTTYPTK Unmodified 1832.8192 0.81920545 1968 Q46938 kduI 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 20.766 21.147 3 0.0095872 8044 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 45.614 45.036 86978000 7786900 6727800 10017000 0 0 0 9566800 7073400 8710700 0 0 0 8900500 5036300 7482100 0 0 0 7127500 8549200 0 0 0 0 6751 1968 6583 125475;125476;125477;125478;125479;125480;125481;125482;125483;125484;125485 77198 77198 1 GAAAVSTDEMGDIIAR Unmodified 1575.7563 0.75627084 1336 P30125 leuB 3-isopropylmalate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.84 33.538 2 1.3058E-13 16076 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 214.26 201.64 144430000 46770000 41448000 30927000 0 0 0 0 0 0 0 0 0 6736800 4785500 4314300 0 0 0 4223800 0 5225700 0 0 0 6752 1336 6584 125486;125487;125488;125489;125490;125491;125492;125493 77199;77200;77201;77202;77203;77204;77205 77201 3 GAADGTNWK Unmodified 918.41954 0.41954463 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.704 13.466 2 2.9294E-05 4022 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 154.35 138.2 1338100000 364440000 341150000 323990000 1172400 5867100 5397300 33464000 32129000 27506000 3971200 2699400 3199800 31027000 29639000 29020000 0 0 0 33949000 37810000 31637000 0 0 0 6753 852 6585 125494;125495;125496;125497;125498;125499;125500;125501;125502;125503;125504;125505;125506;125507;125508;125509;125510;125511 77206;77207;77208;77209;77210;77211;77212;77213;77214 77209 3 GAAGGHTATHHASAAPARPQPVE Unmodified 2190.0679 0.067860425 1183 P21513 rne Ribonuclease E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.641 11.502 3 1.0049E-22 2766 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 178.22 172.55 385490000 50782000 40545000 42013000 0 2817500 1604700 21439000 15923000 18039000 0 0 0 21537000 30040000 30005000 0 0 0 42920000 36709000 31117000 0 0 0 6754 1183 6586 125512;125513;125514;125515;125516;125517;125518;125519;125520;125521;125522;125523;125524;125525 77215;77216;77217;77218;77219;77220;77221;77222;77223;77224;77225;77226 77218 12 GAAGTQYDDSNMGQNK Unmodified 1655.6846 0.68456246 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.005 13.551 2 5.7191E-10 3271 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 140.3 140.16 64412000 0 0 0 787290 0 0 0 0 2265400 4587400 3644600 3705100 7969600 5238700 5332700 2980600 2626900 1636600 7370300 6206600 7733800 0 2326100 0 6755 73 6587 125526;125527;125528;125529;125530;125531;125532;125533;125534;125535;125536;125537;125538;125539;125540;125541 77227;77228;77229;77230;77231;77232;77233;77234;77235;77236 77227 6 GAANFYQK Unmodified 897.43447 0.43446642 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.831 14.682 2 0.00088062 4684 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.22 108.39 405620000 138810000 133850000 109180000 6832700 6042700 5714800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5191900 6756 228 6588 125542;125543;125544;125545;125546;125547;125548;125549;125550;125551;125552;125553 77237;77238;77239;77240;77241;77242;77243;77244;77245 77243 9 GAAPIQR Unmodified 711.40277 0.40277236 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.087 11.678 2 0.0045348 2913 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.41 86.139 204530000 0 32518000 48526000 0 0 0 0 0 64436000 0 0 0 0 0 0 0 5988200 0 53064000 0 0 0 0 0 6757 1224 6589 125554;125555;125556;125557;125558;125559;125560;125561;125562;125563;125564;125565 77246;77247;77248;77249;77250;77251;77252;77253;77254;77255;77256 77253 11 GAAPQEVVSAIR Unmodified 1196.6513 0.65133548 848 P0AED5 uvrY Response regulator UvrY yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.206 24.924 2 4.2542E-06 10621 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.86 119.44 256690000 25354000 21693000 22391000 2180600 2069400 1991100 16854000 18320000 15816000 5900000 4319400 3877300 15441000 15116000 13639000 0 0 0 22372000 22564000 19714000 2758900 2235700 2079100 6758 848 6590 125566;125567;125568;125569;125570;125571;125572;125573;125574;125575;125576;125577;125578;125579;125580;125581;125582;125583;125584;125585;125586 77257;77258;77259;77260;77261;77262;77263 77263 7 GAATLYK Unmodified 722.39629 0.39629 266 P0A6N8 yeiP Elongation factor P-like protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.385 13.234 2 0.14363 3886 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 57.102 32.104 1060500000 0 52303000 54376000 0 0 0 119130000 126200000 115550000 0 0 0 94557000 88748000 85942000 0 0 0 110940000 105590000 107200000 0 0 0 6759 266 6591 125587;125588;125589;125590;125591;125592;125593;125594;125595;125596;125597 77264 77264 0 GAAVGHAQQR Unmodified 993.51043 0.51042533 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 5.1926 6.0614 2 8.3292E-07 998 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 171.47 149.34 475310000 41700000 49154000 42109000 584610 0 0 69668000 52094000 48460000 0 0 0 26054000 30208000 27502000 0 0 0 27928000 31338000 28510000 0 0 0 6760 801 6592 125598;125599;125600;125601;125602;125603;125604;125605;125606;125607;125608;125609;125610 77265;77266;77267;77268;77269;77270;77271;77272;77273;77274;77275;77276 77266 12 GAAWLWPQE Unmodified 1056.5029 0.50288033 1231 P23917 mak Fructokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.649 52.21 2 0.0010642 25905 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.61 110.61 108070000 14822000 13922000 12282000 0 0 0 6970800 6928200 8028600 0 0 0 6797700 7295700 8548600 0 0 0 6458500 8533400 7482100 0 0 0 6761 1231 6593 125611;125612;125613;125614;125615;125616;125617;125618;125619;125620;125621;125622 77277;77278;77279;77280;77281;77282;77283;77284;77285 77277 9 GAAYSTPDEK Unmodified 1037.4666 0.46655441 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.899 12.501 2 0.0012791 2711 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 85.676 83.517 166040000 0 0 0 2098000 2067300 1763000 7311800 0 9788000 4881400 5835100 5029800 19752000 18668000 16940000 0 911650 1584600 0 26562000 28295000 4572600 4962100 5014900 6762 1267 6594 125623;125624;125625;125626;125627;125628;125629;125630;125631;125632;125633;125634;125635;125636;125637;125638;125639;125640 77286;77287 77286 2 GAAYSTPDEKYEK Unmodified 1457.6674 0.66743906 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 2 2 2 2 2 2 1 1 2 2 2 12.592 13.174 2;3 0.0086299 3167 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 54.524 51.902 111690000 0 0 2292900 9993200 10305000 8344400 0 0 0 12869000 12801000 9421400 2557200 0 0 0 0 0 0 6130800 0 11996000 12482000 12493000 6763 1267 6595 125641;125642;125643;125644;125645;125646;125647;125648;125649;125650;125651;125652;125653;125654;125655;125656;125657;125658;125659;125660;125661 77288;77289;77290;77291;77292;77293;77294;77295;77296;77297 77290 10 GADANILQQVR Unmodified 1183.6309 0.63093439 1003 P0AGB0 serB Phosphoserine phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.377 26.022 2 1.9933E-08 12052 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 178.94 148.69 261560000 28033000 25104000 20423000 0 0 0 18329000 20292000 21329000 1249100 851130 788030 18036000 21302000 18016000 0 0 0 32171000 35633000 0 0 0 0 6764 1003 6596 125662;125663;125664;125665;125666;125667;125668;125669;125670;125671;125672;125673;125674;125675;125676 77298;77299;77300;77301;77302;77303;77304;77305;77306;77307;77308;77309 77300 12 GADEELVK Unmodified 859.42871 0.42871234 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 2 2 2 1 1 1 1 1 1 1 1 2 13.85 14.493 2 0.00087248 4494 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 119.57 93.087 19754000000 1511100000 1320800000 1356300000 15489000 13037000 16108000 1916500000 1663700000 1686800000 0 25741000 24571000 1397500000 1556500000 1224900000 0 0 11883000 2065300000 1992500000 1921800000 9358400 9598600 14141000 6765 267 6597 125677;125678;125679;125680;125681;125682;125683;125684;125685;125686;125687;125688;125689;125690;125691;125692;125693;125694;125695;125696;125697;125698;125699;125700;125701;125702 77310;77311;77312;77313;77314;77315;77316;77317;77318;77319;77320;77321;77322;77323;77324;77325;77326;77327;77328;77329;77330;77331 77322 20 GADEGIELLIR Unmodified 1184.6401 0.6401021 138 P06986 hisC Histidinol-phosphate aminotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 43.752 42.365 2 2.4517E-05 21116 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.26 120.88 132660000 18894000 14235000 15554000 0 0 0 13788000 12970000 12527000 0 0 0 5723600 5925700 4213000 0 1240300 0 8112000 10109000 9371800 0 0 0 6766 138 6598 125703;125704;125705;125706;125707;125708;125709;125710;125711;125712;125713;125714;125715 77332;77333;77334 77332 3 GADGYLLK Unmodified 835.44397 0.44396847 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 21.79 21.751 1;2 0.0052891 9077 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 86.866 63.829 1581600000 267650000 253690000 194200000 1960400 1336200 2903800 145510000 142130000 158340000 5954200 0 3710000 55659000 57869000 60260000 1142900 1249300 714440 76159000 78979000 69367000 1018000 795100 957080 6767 908 6599 125716;125717;125718;125719;125720;125721;125722;125723;125724;125725;125726;125727;125728;125729;125730;125731;125732;125733;125734;125735;125736;125737;125738;125739;125740;125741;125742;125743;125744;125745;125746;125747;125748;125749;125750;125751 77335;77336;77337;77338;77339;77340;77341;77342;77343;77344;77345;77346;77347;77348 77338 12 GADKQVIGQVAADLR Unmodified 1539.8369 0.83690442 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 28.35 27.095 2;3 2.2529E-12 9061 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 179.35 159.57 341670000 0 0 0 19895000 25544000 24365000 0 0 0 5846400 39405000 43930000 0 0 0 27863000 22521000 27573000 0 0 0 38499000 26618000 39615000 6768 987 6600 125752;125753;125754;125755;125756;125757;125758;125759;125760;125761;125762;125763;125764;125765;125766;125767;125768;125769;125770;125771;125772;125773;125774 77349;77350;77351;77352;77353;77354;77355;77356;77357;77358;77359;77360;77361;77362;77363;77364;77365;77366;77367 77349 18 GADLIEPTVR Unmodified 1069.5768 0.57677356 1301 P27305 gluQ Glutamyl-Q tRNA(Asp) synthetase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 25.315 24.356 2 0.046857 10725 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 55.549 47.131 34835000 6090900 8854700 5789800 0 0 0 0 0 0 0 0 0 0 0 1996900 0 0 0 3492900 4793200 3816300 0 0 0 6769 1301 6601 125775;125776;125777;125778;125779;125780;125781 77368 77368 0 GADLMQALVDSELQPSR Unmodified 1828.8989 0.89891233 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.741 51.419 2;3 1.1475E-61 24916 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 300.55 276.87 2245400000 204330000 190740000 187310000 0 0 0 145940000 155550000 160100000 0 0 0 197890000 187210000 187520000 0 0 0 204690000 203850000 220310000 0 0 0 6770 1024 6602 125782;125783;125784;125785;125786;125787;125788;125789;125790;125791;125792;125793;125794;125795;125796;125797;125798;125799;125800;125801;125802;125803;125804;125805 77369;77370;77371;77372;77373;77374;77375;77376;77377;77378;77379;77380;77381;77382;77383;77384;77385;77386;77387;77388;77389;77390;77391;77392 77379 24 GADSCLVSIAGEGLVDVPAVK Unmodified 2056.0511 0.051055878 1481 P37647 kdgK 2-dehydro-3-deoxygluconokinase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.684 49.328 2;3 3.908E-10 24449 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 170.74 165.94 549740000 47296000 39331000 41881000 0 0 0 57163000 43015000 48923000 0 0 0 53402000 43544000 46842000 0 0 0 41540000 45282000 41518000 0 0 0 6771 1481 6603 125806;125807;125808;125809;125810;125811;125812;125813;125814;125815;125816;125817;125818;125819;125820;125821;125822;125823;125824;125825;125826;125827;125828;125829 77393;77394;77395;77396;77397;77398;77399 77393 7 GADVALIGTPDGVK Unmodified 1311.7034 0.70343063 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.938 30.519 2 2.8266E-08 14417 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.04 141.46 4339300000 386130000 379230000 363930000 1588300 1757100 1592700 396470000 439010000 404830000 0 0 0 335440000 276670000 242710000 0 0 0 389130000 347840000 371280000 0 885560 760880 6772 382 6604 125830;125831;125832;125833;125834;125835;125836;125837;125838;125839;125840;125841;125842;125843;125844;125845;125846 77400;77401;77402;77403;77404;77405;77406;77407;77408;77409;77410;77411 77403 12 GADVGITMIAR Unmodified 1102.5805 0.58047873 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 32.445 30.689 2 0.0011745 10428 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 81.915 71.223 187710000 0 0 0 11641000 11440000 9626900 0 0 0 19266000 16372000 14943000 0 0 0 0 0 0 0 35863000 44623000 0 12090000 11849000 6773 1427 6605 125847;125848;125849;125850;125851;125852;125853;125854;125855;125856 77412;77413;77414;77415;77416;77417 77417 5 GADVLVLTSGQTDNK Unmodified 1516.7733 0.77330111 1763 P75694 yahO Uncharacterized protein YahO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 3 3 3 30.095 28.957 2;3 1.4974E-20 13418 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 220.1 214.45 4205400000 1533700000 1407700000 1264000000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6774 1763 6606 125857;125858;125859;125860;125861;125862;125863;125864;125865 77418;77419;77420;77421;77422;77423;77424;77425 77418 8 GADVVVVLAHSGLSADPYK Unmodified 1896.9945 0.99452728 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 42.124 40.43 3 9.2319E-07 19608 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.384 84.22 262140000 35334000 33647000 36123000 0 0 0 22951000 24404000 20782000 0 0 0 18553000 17933000 18119000 0 0 0 0 17880000 16417000 0 0 0 6775 184 6607 125866;125867;125868;125869;125870;125871;125872;125873;125874;125875;125876 77426;77427;77428;77429 77429 4 GAEAMQAAGLK Unmodified 1045.5226 0.5226295 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 16.813 17.617 2 0.0020807 6373 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.28 91.262 58908000 0 0 0 4468000 3188300 2319600 0 48932000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6776 819 6608 125877;125878;125879;125880 77430 77430 0 GAELANSFKPDVIIALGGGSPMDAAK Unmodified 2528.2945 0.29447405 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 2 2 2 3 3 3 3 2 2 1 1 1 49.809 48.392 2;3;4 1.7806E-73 23844 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 367.67 365.17 3657400000 322270000 297460000 245690000 72433000 75610000 73227000 461910000 516990000 441310000 59455000 54338000 44418000 146520000 139460000 128640000 0 0 0 129060000 133370000 147180000 52510000 58908000 56662000 6777 548 6609 125881;125882;125883;125884;125885;125886;125887;125888;125889;125890;125891;125892;125893;125894;125895;125896;125897;125898;125899;125900;125901;125902;125903;125904;125905;125906;125907;125908;125909;125910;125911;125912;125913;125914;125915;125916;125917;125918;125919;125920;125921;125922;125923;125924;125925;125926;125927;125928;125929;125930;125931;125932 77431;77432;77433;77434;77435;77436;77437;77438;77439;77440;77441;77442;77443;77444;77445;77446;77447;77448;77449;77450;77451;77452;77453;77454;77455;77456;77457;77458;77459;77460;77461;77462;77463;77464 77439 34 GAELDLLIVMK Unmodified 1200.6788 0.67879579 524 P0A9I3 gcvR Glycine cleavage system transcriptional repressor yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 52.296 51.01 2 0.10101 25111 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 41.876 39.898 19725000 0 0 0 0 0 0 3228900 3019600 3385200 0 0 0 2047200 2846700 2030900 0 0 0 3166700 0 0 0 0 0 6778 524 6610 125933;125934;125935;125936;125937;125938;125939 77465;77466;77467 77466 0 GAELELLR Unmodified 899.50763 0.50763136 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.263 29.843 2 0.00052127 13968 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.44 81.754 2547000000 297740000 220320000 220960000 1274500 1278700 1539900 219880000 214590000 207020000 0 0 0 136640000 177440000 122960000 0 0 0 248360000 248060000 227440000 0 1529600 0 6779 58 6611 125940;125941;125942;125943;125944;125945;125946;125947;125948;125949;125950;125951;125952;125953;125954;125955 77468;77469;77470;77471;77472;77473;77474;77475;77476;77477;77478;77479 77473 12 GAEQIYIPVLIK Unmodified 1342.786 0.78603805 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 1 1 1 49.27 47.897 2;3 5.0626E-05 23074 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 91.313 91.313 30504000000 4686900000 4585600000 4558000000 34888000 35896000 35571000 2821400000 2635900000 2620600000 10002000 12587000 8425600 1513600000 1433300000 1366700000 0 0 0 1337500000 1407100000 1364300000 12768000 11526000 11297000 6780 397 6612 125956;125957;125958;125959;125960;125961;125962;125963;125964;125965;125966;125967;125968;125969;125970;125971;125972;125973;125974;125975;125976;125977;125978;125979;125980;125981;125982;125983;125984;125985;125986;125987;125988;125989;125990;125991;125992 77480;77481;77482;77483;77484;77485;77486;77487;77488;77489;77490;77491;77492;77493;77494;77495;77496;77497;77498;77499;77500;77501;77502;77503;77504;77505;77506;77507;77508;77509;77510 77492 31 GAEVEMLSADFLK Unmodified 1408.6908 0.69081704 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 48.488 47.237 2 1.4529E-05 18831 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 112.13 100.42 42787000 0 13934000 1408700 0 0 0 0 0 0 4706600 3585900 5305000 5699500 0 0 0 0 1531600 0 0 6614800 0 0 0 6781 1058 6613 125993;125994;125995;125996;125997;125998;125999;126000 77511;77512;77513;77514;77515;77516 77513 5 GAEYMVDFLPK Unmodified 1268.6111 0.61111015 567 P0A9Z1 glnB Nitrogen regulatory protein P-II 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.089 44.599 2 0.00027655 21568 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.692 75.912 974820000 104900000 112340000 99989000 0 0 0 63686000 52964000 56756000 0 0 0 79210000 79611000 80069000 0 0 0 78659000 89640000 76987000 0 0 0 6782 567 6614 126001;126002;126003;126004;126005;126006;126007;126008;126009;126010;126011;126012 77517;77518;77519;77520;77521;77522;77523;77524;77525;77526;77527;77528 77525 12 GAFAMGGMAAFIPSK Unmodified 1454.705 0.70502731 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 49.164 47.796 2 7.9091E-06 23231 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 97.214 86.691 140370000 0 51714000 40308000 0 0 0 9372400 10038000 9759900 0 0 0 0 0 4056000 0 0 0 4152300 6020400 4947100 0 0 0 6783 195 6615 126013;126014;126015;126016;126017;126018;126019;126020;126021 77529;77530 77529 2 GAFAMGGMAAFIPSKDEEHNNQVLNK Unmodified 2775.3109 0.31086917 195 P08997 aceB Malate synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 1 3 3 2 1 2 2 2 2 2 2 38.226 36.519 2;3;4 1.0765E-30 17544 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 262.23 251.28 7235400000 1869100000 1654900000 1676200000 2407500 3184600 785610 409510000 376770000 353520000 0 0 1002900 144940000 138460000 110860000 0 0 0 176950000 164910000 151790000 0 0 0 6784 195 6616 126022;126023;126024;126025;126026;126027;126028;126029;126030;126031;126032;126033;126034;126035;126036;126037;126038;126039;126040;126041;126042;126043;126044;126045;126046;126047;126048;126049;126050;126051;126052;126053;126054;126055 77531;77532;77533;77534;77535;77536;77537;77538;77539;77540;77541;77542;77543;77544;77545;77546;77547;77548;77549;77550;77551;77552;77553;77554;77555;77556;77557;77558 77552 28 GAFAMGGMAAFIPSKDEEHNNQVLNK Oxidation (M) 2791.3058 0.30578379 195 P08997 aceB Malate synthase A yes yes 0 1 1 By MS/MS By matching 1 1 32.951 31.719 4 9.8248E-05 15072 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 67.413 66.451 34005000 0 20847000 13158000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6785 195 6616 126056;126057 77559 77559 62;63 1 GAFAYISDQQK Unmodified 1226.5932 0.5931519 1638 P61320 lolB Outer-membrane lipoprotein LolB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 25.873 24.572 2 0.00028767 10959 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.267 81.031 72703000 6196400 4537200 4224800 0 0 0 5406300 4840200 0 2500000 2978700 3476900 0 4272900 0 0 0 0 10198000 10517000 11122000 2433500 0 0 6786 1638 6617 126058;126059;126060;126061;126062;126063;126064;126065;126066;126067;126068;126069;126070 77560;77561;77562;77563;77564;77565 77565 5 GAFSWVTR Unmodified 922.4661 0.4661009 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 32.739 31.404 2 0.0004054 14813 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.98 111.14 60003000 20256000 19663000 14213000 0 0 0 0 0 2050300 0 0 0 0 0 1691100 0 0 0 0 2129400 0 0 0 0 6787 1554 6618 126071;126072;126073;126074;126075;126076 77566;77567;77568 77567 3 GAFVSEVLPGSGSAK Unmodified 1404.7249 0.72489436 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.812 31.284 2 0.0058842 10706 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 74.76 72.14 633780000 73169000 67551000 61781000 2404500 2328000 2928300 50241000 55833000 57479000 6987100 7976200 6438400 33086000 37905000 36225000 0 0 1029500 40827000 40494000 41685000 4094900 0 3321800 6788 1507 6619 126077;126078;126079;126080;126081;126082;126083;126084;126085;126086;126087;126088;126089;126090;126091;126092;126093;126094;126095;126096;126097 77569;77570;77571;77572;77573;77574 77574 5 GAFVSQVLPNSSAAK Unmodified 1474.778 0.77799256 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.164 28.71 2 6.3014E-15 12844 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 185.99 178.35 1911900000 116840000 123940000 103580000 14562000 14352000 13719000 132020000 133090000 133970000 64203000 61588000 51359000 123450000 125280000 117390000 0 8895800 8361500 146440000 149290000 160450000 36142000 36685000 36249000 6789 1044 6620 126098;126099;126100;126101;126102;126103;126104;126105;126106;126107;126108;126109;126110;126111;126112;126113;126114;126115;126116;126117;126118;126119;126120;126121 77575;77576;77577;77578;77579;77580;77581;77582;77583;77584;77585;77586;77587;77588;77589;77590 77588 15 GAGDIASGVALR Unmodified 1085.5829 0.58292157 1953 Q46808 yqeB Uncharacterized protein YqeB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 26.279 24.965 2 1.83E-05 8858 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 123.86 98.301 16569000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5529300 5909600 5130100 6790 1953 6621 126122;126123;126124 77591;77592;77593 77591 3 GAGEPVSFATV Unmodified 1033.508 0.50802529 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 40.147 38.493 2 0.016055 13532 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 60.682 57.844 18564000 0 0 1309400 5856000 6156000 5242100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6791 114 6622 126125;126126;126127;126128 77594 77594 1 GAGLGGGHDER Unmodified 1024.4686 0.46862009 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.309 9.0942 2 9.0649E-05 1269 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.64 117.28 409630000 18971000 13975000 4673200 3708100 2854400 3550700 65460000 57681000 56848000 0 15312000 19892000 10272000 13678000 5924800 0 0 0 29640000 35384000 45800000 0 6005700 0 6792 595 6623 126129;126130;126131;126132;126133;126134;126135;126136;126137;126138;126139;126140;126141;126142;126143;126144;126145;126146 77595;77596;77597;77598;77599;77600;77601;77602;77603;77604;77605;77606;77607;77608;77609 77597 15 GAGLVDFIHSESR Unmodified 1386.6892 0.68917755 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.378 31.705 3 4.4585E-06 14961 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 100.19 98.486 176550000 12869000 12832000 9948200 4101300 4601600 4550000 13563000 10183000 8181300 4752800 2908300 5806400 11218000 7760900 9141500 0 0 0 14787000 11521000 14897000 3859400 5007400 4055500 6793 1393 6624 126147;126148;126149;126150;126151;126152;126153;126154;126155;126156;126157;126158;126159;126160;126161;126162;126163;126164;126165;126166;126167 77610;77611;77612;77613;77614;77615;77616;77617;77618;77619 77618 10 GAGVEEQGR Unmodified 901.42536 0.42535829 1410 P33218 yebE Inner membrane protein YebE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.479 11.217 2 0.10985 2247 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 47.082 36.775 99410000 0 0 3488200 0 0 0 12901000 11584000 10742000 0 0 0 2292600 1994600 0 0 1087800 0 19562000 18303000 17455000 0 0 0 6794 1410 6625 126168;126169;126170;126171;126172;126173;126174;126175;126176;126177 77620 77620 0 GAHADEQK Unmodified 854.38824 0.38824451 1033 P0C054 ibpA Small heat shock protein IbpA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 3.1249 4.0632 2 0.002784 535 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 97.602 82.163 13669000 0 0 0 0 0 0 0 0 0 0 0 0 855600 984620 717290 0 0 0 3713700 3577300 3820200 0 0 0 6795 1033 6626 126178;126179;126180;126181;126182;126183 77621;77622;77623 77622 3 GAHADEQKER Unmodified 1139.5319 0.53194863 1033 P0C054 ibpA Small heat shock protein IbpA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 8.9623 9.107 2;3 3.4653E-06 1462 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 180.44 171.58 156230000 0 0 0 0 0 0 0 0 0 47065000 29013000 38922000 0 0 0 3230000 10995000 3478500 0 0 0 3589700 8847800 11085000 6796 1033 6627 126184;126185;126186;126187;126188;126189;126190;126191;126192;126193;126194;126195;126196;126197;126198;126199;126200;126201 77624;77625;77626;77627;77628;77629;77630;77631;77632;77633 77629 10 GAHIYAEIVGYGATSDGADMVAPSGEGAVR Unmodified 2920.3661 0.36613544 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 1 1 1 2 2 2 40.185 38.518 3 1.4198E-16 17791 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 144.7 143.94 778040000 96257000 84430000 68464000 1331500 0 0 63982000 52130000 53883000 0 0 0 61802000 47113000 48858000 0 0 0 70954000 69302000 59538000 0 0 0 6797 489 6628 126202;126203;126204;126205;126206;126207;126208;126209;126210;126211;126212;126213;126214;126215;126216;126217;126218;126219;126220 77634;77635;77636;77637;77638;77639;77640;77641;77642;77643;77644;77645;77646;77647;77648;77649;77650;77651;77652;77653;77654;77655;77656;77657;77658;77659 77655 26 GAIDMIVR Unmodified 873.47422 0.47422274 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.7 29.492 2 0.00042382 13760 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 139.92 94.467 2034500000 210530000 191610000 168650000 7906400 7406700 8413800 0 0 0 0 0 34156000 188040000 180540000 173640000 13401000 11980000 10623000 231850000 240610000 247570000 36840000 34091000 36695000 6798 547 6629 126221;126222;126223;126224;126225;126226;126227;126228;126229;126230;126231;126232;126233;126234;126235;126236;126237;126238;126239 77660;77661;77662;77663;77664;77665;77666;77667;77668;77669;77670;77671;77672;77673;77674;77675;77676;77677;77678 77668 19 GAIFGLTR Unmodified 833.47594 0.4759373 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.796 29.402 2 0.00025974 13548 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.4 116.04 6114600000 122580000 100160000 94752000 3047500 2702800 3125900 901330000 833760000 878690000 5285800 6346800 6477300 429650000 402550000 349000000 7264400 4733800 6877300 645820000 658730000 629780000 6868100 7714400 7397100 6799 239 6630 126240;126241;126242;126243;126244;126245;126246;126247;126248;126249;126250;126251;126252;126253;126254;126255;126256;126257;126258;126259;126260;126261;126262;126263 77679;77680;77681;77682;77683;77684;77685;77686;77687;77688;77689;77690;77691;77692;77693;77694 77691 16 GAILADGK Unmodified 743.41775 0.41775372 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 2 2 1 1 1 1 1 2 1 1 1 13.08 13.934 2 0.0031221 4359 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.262 52.76 567190000 51327000 47155000 124390000 0 0 0 52282000 43900000 38200000 0 0 0 26528000 18847000 89979000 0 0 0 25246000 25252000 24090000 0 0 0 6800 218 6631 126264;126265;126266;126267;126268;126269;126270;126271;126272;126273;126274;126275;126276;126277;126278 77695;77696;77697;77698;77699 77697 5 GAINFSR Unmodified 763.39769 0.39768698 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 16.097 16.751 2 0.0066956 5857 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.401 59.685 54146000 0 0 0 0 0 0 19846000 20118000 14181000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6801 1318 6632 126279;126280;126281 77700;77701;77702 77701 3 GAISAQQLDDDR Unmodified 1287.6055 0.6055075 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.832 19.165 2 2.3686E-08 7340 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 167.93 157.1 115820000 0 5202400 0 0 0 0 20833000 22705000 19565000 2129600 2220500 1767900 9066700 0 8222300 0 0 0 10071000 6830800 7202800 0 0 0 6802 1476 6633 126282;126283;126284;126285;126286;126287;126288;126289;126290;126291;126292;126293;126294 77703;77704;77705;77706;77707;77708;77709;77710 77707 8 GAISAQQLDDDRAAAESAR Unmodified 1943.9297 0.92969519 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.86 21.573 3 1.3945E-17 7317 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 161.86 149.94 60986000 0 0 0 1589700 1909600 2340900 0 4395300 4817500 16111000 10759000 7675200 0 0 0 0 0 0 0 0 0 3518600 3078800 4790600 6803 1476 6634 126295;126296;126297;126298;126299;126300;126301;126302;126303;126304;126305 77711;77712;77713;77714;77715;77716;77717 77711 7 GAITGVDTSK Unmodified 947.49238 0.49237523 1669 P64451 ydcL Uncharacterized lipoprotein YdcL yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 13.18 13.742 2 0.020242 3503 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 60.892 46.228 31169000 8800800 0 0 2303400 1853400 0 0 9748800 0 3693100 2272800 2496600 0 0 0 0 0 0 0 0 0 0 0 0 6804 1669 6635 126306;126307;126308;126309;126310;126311;126312 77718;77719 77719 2 GAITIATR Unmodified 801.47085 0.47085192 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 3 2 3 3 1 2 1 1 1 1 1 3 2 1 1 1 2 2 2 2 2 2 17.35 17.901 2 1.518E-06 6080 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 192.28 99.588 25776000000 783080000 746020000 611350000 2112300000 2812500000 3562200000 1132100000 1170600000 1122600000 603230000 502730000 295600000 670350000 629360000 554870000 153090000 115600000 123640000 1037200000 1122700000 1054200000 1900900000 1519800000 1439800000 6805 939 6636 126313;126314;126315;126316;126317;126318;126319;126320;126321;126322;126323;126324;126325;126326;126327;126328;126329;126330;126331;126332;126333;126334;126335;126336;126337;126338;126339;126340;126341;126342;126343;126344;126345;126346;126347;126348;126349;126350;126351;126352;126353;126354;126355 77720;77721;77722;77723;77724;77725;77726;77727;77728;77729;77730;77731;77732;77733;77734;77735;77736;77737;77738;77739;77740;77741;77742;77743;77744;77745;77746;77747;77748;77749;77750;77751;77752;77753;77754;77755;77756;77757;77758;77759 77755 40 GAIVGIIGPNGAGK Unmodified 1222.7034 0.70337105 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.74 29.285 2 2.2096E-05 13597 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 120.12 117.85 284380000 32512000 26632000 29298000 2301700 2368900 2021200 15283000 13451000 19324000 3298500 3107600 2894300 19015000 21872000 20408000 0 1065600 846110 21815000 19286000 22005000 2076700 1490100 2009100 6806 561 6637 126356;126357;126358;126359;126360;126361;126362;126363;126364;126365;126366;126367;126368;126369;126370;126371;126372;126373;126374;126375;126376;126377;126378 77760;77761;77762;77763;77764;77765;77766;77767;77768;77769 77766 10 GAIVGMTGYGESAPADK Unmodified 1622.761 0.76102187 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 1 1 1 27.774 26.658 2;3 7.2027E-19 12493 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 191.29 178.09 1201600000 246830000 228550000 209520000 0 0 0 123180000 102720000 102930000 0 0 0 28227000 24825000 28617000 0 0 0 33830000 34279000 38053000 0 0 0 6807 1423 6638 126379;126380;126381;126382;126383;126384;126385;126386;126387;126388;126389;126390;126391;126392 77770;77771;77772;77773;77774;77775;77776;77777;77778;77779;77780;77781;77782;77783 77770 12 GAKPAAKPQETSVADEAPEVTATVISYDNYVTILDEETLK Unmodified 4263.1322 0.13220913 37 P00582 polA DNA polymerase I yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.035 51.251 4 5.3816E-18 19014 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 118.42 117.2 103470000 0 0 0 1094700 0 0 16067000 10190000 12262000 0 0 0 0 0 0 22872000 18709000 22278000 0 0 0 0 0 0 6808 37 6639 126393;126394;126395;126396;126397;126398;126399 77784;77785;77786 77786 3 GAKPVHWCVDCR Unmodified 1483.6813 0.68127218 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 3 3 3 3 3 3 13.057 13.933 2;3;4 3.5496E-08 4146 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 169.58 156.96 2228300000 252090000 252350000 222500000 664490 0 779020 160380000 177360000 189550000 0 0 0 133700000 142110000 142930000 0 0 0 202050000 190860000 160960000 0 0 0 6809 58 6640 126400;126401;126402;126403;126404;126405;126406;126407;126408;126409;126410;126411;126412;126413;126414;126415;126416;126417;126418;126419;126420;126421;126422;126423;126424;126425;126426;126427;126428;126429;126430;126431;126432;126433;126434;126435;126436;126437 77787;77788;77789;77790;77791;77792;77793;77794;77795;77796;77797;77798;77799;77800;77801;77802;77803;77804;77805;77806;77807;77808;77809;77810;77811;77812;77813;77814;77815 77792 29 GALAGHSAVELGSLVVK Unmodified 1606.9043 0.90425571 1969 Q46939 yqeF Probable acetyl-CoA acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.51 31.837 3 0.00099857 15164 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 63.827 59.647 105450000 4932200 5199500 3405000 877670 943250 796980 5162600 5178200 4146600 3179600 4378300 5015100 4093100 2822300 3167000 0 0 0 13416000 13367000 13164000 3947100 4128500 4126400 6810 1969 6641 126438;126439;126440;126441;126442;126443;126444;126445;126446;126447;126448;126449;126450;126451;126452;126453;126454;126455;126456;126457;126458 77816;77817;77818;77819;77820;77821;77822 77821 7 GALALVER Unmodified 827.4865 0.48650199 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 24.348 23.445 2 0.001177 10130 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.04 42.637 664030000 254140000 198070000 179870000 0 0 0 0 0 12576000 0 0 0 0 0 0 0 0 0 0 17554000 1031600 783600 0 0 6811 1464 6642 126459;126460;126461;126462;126463;126464;126465 77823;77824;77825 77825 3 GALAQYDEQLAEYYLTR Unmodified 2002.9636 0.96362108 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 2 1 1 2 1 1 51.419 50.111 2;3 7.0843E-25 23432 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 277.06 269.2 548630000 72817000 55185000 51418000 0 0 0 58457000 52583000 57461000 0 1639800 0 37769000 71773000 38115000 0 0 0 0 51409000 0 0 0 0 6812 1136 6643 126466;126467;126468;126469;126470;126471;126472;126473;126474;126475;126476;126477;126478;126479;126480 77826;77827;77828;77829;77830;77831;77832;77833;77834;77835;77836;77837 77836 12 GALASVQQMIQLAR Unmodified 1484.8133 0.81333221 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.02 47.618 2 1.465E-19 23140 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 210.6 195.63 596980000 37165000 35994000 33171000 2407400 2358200 2211800 48333000 49718000 49284000 15947000 16293000 14918000 39177000 38430000 36278000 0 0 0 61533000 53510000 53966000 3007500 3273500 0 6813 1880 6644 126481;126482;126483;126484;126485;126486;126487;126488;126489;126490;126491;126492;126493;126494;126495;126496;126497;126498;126499;126500 77838;77839;77840;77841;77842;77843;77844;77845;77846;77847;77848;77849;77850;77851 77842 14 GALATGMENSLQSAVR Unmodified 1603.7988 0.79880436 1165 P20099 bisC Biotin sulfoxide reductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 33.718 32.256 2 2.8849E-08 15567 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.71 130.27 106950000 15677000 13615000 12491000 0 0 0 8265600 7600000 7391000 0 0 0 6736500 7430400 0 0 0 0 9427000 9910000 8410700 0 0 0 6814 1165 6645 126501;126502;126503;126504;126505;126506;126507;126508;126509;126510;126511 77852;77853;77854;77855;77856;77857;77858 77853 7 GALDCSGVK Unmodified 905.42767 0.42766648 367 P0A7S3 rpsL 30S ribosomal protein S12 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.059 13.665 2 0.00019373 4131 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.12 99.997 4520400000 590960000 507900000 493800000 26053000 27743000 21723000 232770000 248940000 206290000 73080000 51487000 56874000 299120000 233380000 219590000 13699000 15560000 14686000 396830000 351240000 349330000 32681000 30357000 26340000 6815 367 6646 126512;126513;126514;126515;126516;126517;126518;126519;126520;126521;126522;126523;126524;126525;126526;126527;126528;126529;126530;126531;126532;126533;126534;126535 77859;77860;77861;77862;77863;77864;77865;77866;77867;77868;77869;77870;77871;77872;77873;77874;77875;77876;77877;77878;77879;77880;77881 77876 23 GALDCSGVKDR Unmodified 1176.5557 0.55572054 367 P0A7S3 rpsL 30S ribosomal protein S12 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 12.026 12.418 2;3 1.9835E-05 2777 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 166.33 157.46 160710000 0 0 0 12217000 10093000 10939000 0 0 0 11504000 21295000 19949000 0 0 0 9003000 9133000 8964300 0 0 0 16491000 15985000 15134000 6816 367 6647 126536;126537;126538;126539;126540;126541;126542;126543;126544;126545;126546;126547;126548;126549;126550;126551;126552;126553;126554;126555;126556;126557;126558 77882;77883;77884;77885;77886;77887;77888;77889;77890;77891;77892;77893;77894;77895 77888 13 GALDDEQLK Unmodified 987.48729 0.48728985 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.332 18.002 2 0.00086842 6186 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 90.308 73.069 1085000000 228130000 215390000 194200000 0 0 0 69159000 70041000 70284000 0 0 0 41226000 42789000 0 0 0 0 51749000 49635000 52414000 0 0 0 6817 555 6648 126559;126560;126561;126562;126563;126564;126565;126566;126567;126568;126569;126570 77896;77897;77898;77899;77900;77901;77902;77903 77903 8 GALDLAGLPGK Unmodified 1010.576 0.57604528 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.937 33.446 2 2.989E-05 15860 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.23 115.84 1605000000 120650000 117900000 101910000 3417200 0 0 125240000 122820000 123720000 29397000 25848000 24941000 105010000 103540000 101610000 7156500 5587800 5451500 151950000 152710000 141680000 10465000 12527000 11527000 6818 883 6649 126571;126572;126573;126574;126575;126576;126577;126578;126579;126580;126581;126582;126583;126584;126585;126586;126587;126588;126589;126590;126591;126592 77904;77905;77906;77907;77908;77909;77910;77911;77912;77913;77914;77915 77909 12 GALDTLGNR Unmodified 915.47739 0.47739386 1273 P25746 hflD High frequency lysogenization protein HflD yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.394 19.676 2 0.00026977 6260 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 120.49 88.134 45246000 3654300 0 0 2903400 3028300 3223700 0 0 0 3478800 3662000 3312900 0 0 3787400 0 0 0 0 0 10559000 4031400 3605200 0 6819 1273 6650 126593;126594;126595;126596;126597;126598;126599;126600;126601;126602;126603;126604 77916;77917;77918;77919;77920;77921;77922;77923;77924;77925 77916 10 GALDVGATAINEEMK Unmodified 1517.7396 0.73955814 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 35.893 34.336 2;3 3.7024E-20 16497 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 211.64 186.85 2555900000 438390000 418840000 344040000 0 0 0 154350000 154370000 144210000 0 0 0 129330000 122190000 120260000 0 0 0 169220000 175800000 184880000 0 0 0 6820 1872 6651 126605;126606;126607;126608;126609;126610;126611;126612;126613;126614;126615;126616;126617;126618;126619;126620;126621;126622;126623;126624;126625;126626;126627;126628;126629 77926;77927;77928;77929;77930;77931 77927 6 GALGHWAAIR Unmodified 1050.5723 0.5722973 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 22.816 22.067 2;3 0.00042045 9619 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 68.846 66.789 236510000 0 0 0 0 0 0 73393000 70367000 72982000 3402600 0 0 5111900 6363600 4891800 0 0 0 0 0 0 0 0 0 6821 722 6652 126630;126631;126632;126633;126634;126635;126636;126637;126638;126639 77932;77933;77934;77935 77933 4 GALHPGLQFSLGQHR Unmodified 1616.8536 0.85355754 115 P05706 srlB Glucitol/sorbitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 2 1 24.979 23.71 3;4 1.1997E-09 10724 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.48 120.42 238430000 0 0 0 0 0 0 36102000 38653000 25574000 9500800 7690400 5932100 17777000 12558000 15273000 0 0 0 21001000 32348000 16022000 0 0 0 6822 115 6653 126640;126641;126642;126643;126644;126645;126646;126647;126648;126649;126650;126651;126652;126653;126654;126655 77936;77937;77938;77939;77940;77941;77942;77943;77944;77945;77946;77947;77948 77939 13 GALIDSQAAIEALK Unmodified 1398.7718 0.77184455 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 2 2 2 2 2 2 40.857 39.157 2;3 9.6704E-06 18362 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 133.81 108.96 2745900000 226830000 247510000 222570000 0 0 0 336610000 278680000 293960000 1193700 0 2190300 199520000 193520000 198910000 0 0 0 186330000 182490000 175620000 0 0 0 6823 1608 6654 126656;126657;126658;126659;126660;126661;126662;126663;126664;126665;126666;126667;126668;126669;126670;126671;126672;126673;126674;126675;126676;126677;126678;126679 77949;77950;77951;77952;77953;77954;77955;77956;77957;77958;77959;77960;77961 77958 13 GALLHVEK Unmodified 865.50215 0.50215205 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.107 13.914 2 0.0008507 4233 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.49 68.916 1588500000 176490000 152300000 158060000 0 0 0 123890000 143180000 145060000 0 0 510800 104350000 101820000 73590000 0 0 0 150020000 131590000 127670000 0 0 0 6824 58 6655 126680;126681;126682;126683;126684;126685;126686;126687;126688;126689;126690;126691;126692 77962;77963;77964;77965;77966;77967;77968;77969;77970;77971;77972 77962 11 GALLLDISGVIVDKPDSSQR Unmodified 2082.1321 0.13208339 188 P08395 sppA Protease 4 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.431 46.955 3 7.2934E-08 18722 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 110.33 95.399 84941000 0 2373800 1787200 1168800 1173000 0 6306800 6457500 6911800 6803200 10671000 6927000 4237500 3042400 0 0 0 0 8141000 5632200 4560700 3147300 3098200 2501900 6825 188 6656 126693;126694;126695;126696;126697;126698;126699;126700;126701;126702;126703;126704;126705;126706;126707;126708;126709;126710 77973;77974;77975;77976 77975 4 GALLPLR Unmodified 738.47521 0.47520902 1336 P30125 leuB 3-isopropylmalate dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 28.468 27.306 2 0.024726 12598 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.839 49.887 127220000 34006000 31429000 33991000 0 0 0 2858300 0 0 0 0 0 4436200 4436100 3860500 0 0 0 4255800 3649400 4300200 0 0 0 6826 1336 6657 126711;126712;126713;126714;126715;126716;126717;126718;126719;126720 77977;77978 77977 0 GALPNIPGMELTDNLMAFVER Unmodified 2287.1341 0.134074 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 1 1 1 2 2 2 55.712 54.246 2;3 1.0661E-21 25722 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 163.45 158.9 836660000 45656000 91870000 97912000 0 0 5157500 79361000 58169000 70406000 0 0 0 47899000 60908000 52103000 0 0 0 73751000 84341000 69126000 0 0 0 6827 214 6658 126721;126722;126723;126724;126725;126726;126727;126728;126729;126730;126731;126732;126733;126734;126735;126736;126737;126738;126739;126740 77979;77980;77981;77982;77983;77984 77984 6 GALQEILNVCSQVR Unmodified 1585.8246 0.82462518 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 1 1 2 2 2 2 1 2 1 2 2 2 2 2 2 45.189 43.739 2;3 5.7155E-20 20310 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 276 241.28 938040000 0 0 0 969870 0 0 10148000 12021000 11912000 2424100 2184200 5066100 228600000 204410000 207260000 12709000 29710000 23142000 48794000 47495000 47809000 14734000 13787000 14865000 6828 647 6659 126741;126742;126743;126744;126745;126746;126747;126748;126749;126750;126751;126752;126753;126754;126755;126756;126757;126758;126759;126760;126761;126762;126763;126764;126765;126766;126767;126768;126769;126770;126771;126772;126773 77985;77986;77987;77988;77989;77990;77991;77992;77993;77994;77995;77996;77997;77998;77999 77999 15 GALSAVVADSR Unmodified 1044.5564 0.55637247 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.836 22.227 2 2.2066E-14 7344 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 214.96 179.67 9604000000 1046100000 1046800000 870050000 64505000 79665000 76711000 475310000 483840000 472750000 89274000 110780000 129470000 576380000 516480000 478310000 62341000 59646000 69826000 804460000 857570000 943510000 103840000 88334000 98026000 6829 349 6660 126774;126775;126776;126777;126778;126779;126780;126781;126782;126783;126784;126785;126786;126787;126788;126789;126790;126791;126792;126793;126794;126795;126796;126797 78000;78001;78002;78003;78004;78005;78006;78007;78008;78009;78010;78011;78012;78013;78014;78015;78016;78017;78018;78019;78020;78021;78022;78023 78011 24 GALVDDIVYTIALTAIQSAQQQ Unmodified 2317.2165 0.2165413 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.855 54.386 3 1.5534E-06 25809 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 90.718 87.994 286060000 13931000 14247000 11175000 0 0 0 12698000 11766000 15946000 5208600 4439800 3081400 38528000 37115000 43985000 0 0 0 22692000 26345000 24902000 0 0 0 6830 539 6661 126798;126799;126800;126801;126802;126803;126804;126805;126806;126807;126808;126809;126810;126811;126812 78024;78025;78026;78027;78028;78029;78030;78031 78031 8 GALVILESTSPVGSTEK Unmodified 1686.904 0.90398093 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 38.967 37.257 2 8.4008E-19 17306 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 189.33 177.46 361240000 15800000 16793000 13333000 0 0 0 32669000 28249000 31014000 0 0 0 31488000 28556000 31835000 0 0 0 41631000 45822000 41266000 2778700 0 0 6831 1307 6662 126813;126814;126815;126816;126817;126818;126819;126820;126821;126822;126823;126824;126825 78032;78033;78034;78035;78036;78037;78038;78039;78040;78041;78042;78043 78042 12 GAMAECR Unmodified 793.32109 0.32109292 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 10.311 10.932 2 0.0017585 2088 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 124.32 124.32 215760000 0 0 0 0 0 0 0 2741800 2469800 0 0 13060000 16172000 0 15341000 0 0 0 53526000 0 43121000 26615000 19654000 23061000 6832 215 6663 126826;126827;126828;126829;126830;126831;126832;126833;126834;126835;126836 78044;78045;78046;78047;78048;78049 78045 5 GAMALFGEK Unmodified 922.45824 0.45823833 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.377 28.963 2 0.00020868 13493 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.81 93.344 1662800000 131380000 134970000 125400000 0 0 0 131600000 128530000 134230000 3569800 3749600 3250200 132220000 116810000 105230000 0 1357600 1841200 170960000 170600000 163030000 0 1458700 2600400 6833 59 6664 126837;126838;126839;126840;126841;126842;126843;126844;126845;126846;126847;126848;126849;126850;126851;126852;126853;126854;126855 78050;78051;78052;78053;78054;78055;78056;78057 78053 8 GAMEESGAVLIK Unmodified 1203.6169 0.61692381 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 2 2 1 2 1 26.354 25.308 2 7.8939E-05 10986 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 100.02 68.943 846740000 81033000 83282000 79030000 0 0 0 92646000 93306000 88853000 0 0 0 67229000 64391000 66991000 0 0 0 45447000 45050000 39481000 0 0 0 6834 214 6665 126856;126857;126858;126859;126860;126861;126862;126863;126864;126865;126866;126867;126868;126869;126870;126871;126872;126873;126874 78058;78059;78060;78061;78062;78063;78064;78065;78066;78067;78068 78067 11 GAMLDELR Unmodified 903.4484 0.44840192 873 P0AEM6 fliA RNA polymerase sigma factor FliA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 26.526 25.494 2 0.0022949 11283 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.69 66.585 57723000 20295000 18949000 13514000 771810 1088700 1179200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1925600 0 0 0 6835 873 6666 126875;126876;126877;126878;126879;126880;126881 78069;78070;78071 78071 3 GAMLDVFNR Unmodified 1021.5015 0.50150012 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.934 35.277 2 0.0035689 16890 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 81.119 76.437 263660000 49930000 40089000 37930000 0 0 0 13745000 13329000 17807000 0 0 0 13203000 13289000 13278000 0 0 0 16455000 16037000 18571000 0 0 0 6836 1788 6667 126882;126883;126884;126885;126886;126887;126888;126889;126890;126891;126892;126893 78072;78073;78074;78075;78076;78077;78078;78079 78078 5 GAMTNHWVDIK Unmodified 1270.6128 0.61284149 1393 P32176 fdoG Formate dehydrogenase-O major subunit no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 21.849 21.262 3 0.044943 7204 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 31.597 27.081 185000000 0 17039000 22950000 2184800 2219800 2510100 8586700 12144000 10407000 2869100 2416400 1830700 10324000 0 12595000 0 0 0 34185000 0 39537000 1287800 1908000 0 6837 1393 6668 126894;126895;126896;126897;126898;126899;126900;126901;126902;126903;126904;126905;126906;126907;126908;126909;126910;126911;126912;126913 78080;78081;78082;78083 78080 4 GANEAIDFNDELR Unmodified 1462.6688 0.66883604 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.617 32.012 2 3.2594E-31 15353 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 254.24 250.6 3164000000 238690000 241500000 218940000 868730 1362700 1044000 488120000 496220000 452300000 2121500 1832200 0 186200000 163690000 158710000 0 0 0 170220000 167600000 174520000 0 0 0 6838 449 6669 126914;126915;126916;126917;126918;126919;126920;126921;126922;126923;126924;126925;126926;126927;126928;126929;126930 78084;78085;78086;78087;78088;78089;78090;78091;78092;78093;78094 78086 11 GANFDKYAGQDIVSNASCTTNCLAPLAK Unmodified 2985.3961 0.39605536 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.779 36.92 3 2.2055E-11 14514 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 129.24 119.13 274110000 5548400 8556500 7010400 14275000 10535000 12001000 24319000 19192000 20288000 8967700 9671700 10523000 11536000 8703300 12003000 0 0 0 28890000 23045000 23189000 6005700 4780300 5072200 6839 504 6670 126931;126932;126933;126934;126935;126936;126937;126938;126939;126940;126941;126942;126943;126944;126945;126946;126947;126948;126949;126950;126951 78095;78096;78097;78098;78099;78100;78101;78102;78103;78104;78105;78106;78107;78108;78109 78097 15 GANFIAVHEMLDGFR Unmodified 1675.8141 0.81406049 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 44.878 43.214 2;3 5.9268E-20 20865 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 228.93 201.5 4344200000 1233800000 1192000000 1039000000 28629000 24532000 27569000 191460000 164150000 151500000 34658000 33469000 39106000 22891000 19180000 17179000 0 0 0 33848000 39947000 42840000 2858000 2817900 2671300 6840 677 6671 126952;126953;126954;126955;126956;126957;126958;126959;126960;126961;126962;126963;126964;126965;126966;126967;126968;126969;126970;126971;126972;126973;126974;126975;126976;126977;126978;126979 78110;78111;78112;78113;78114;78115;78116;78117;78118;78119;78120;78121;78122;78123;78124;78125;78126;78127;78128;78129;78130;78131;78132;78133 78130 24 GANFSFAVEDTQK Unmodified 1412.6572 0.65720872 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 2 2 2 2 2 1 31.785 30.37 2;3 0.00051341 14309 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.201 75.438 808330000 83104000 88697000 0 0 0 0 91304000 67775000 72035000 0 0 4394400 56531000 57675000 47523000 0 0 0 88214000 83992000 67085000 0 0 0 6841 59 6672 126980;126981;126982;126983;126984;126985;126986;126987;126988;126989;126990;126991;126992;126993;126994;126995;126996;126997;126998 78134;78135;78136;78137;78138;78139 78134 6 GANKEEAEK Unmodified 974.46689 0.46688876 1053 P10346 glnQ Glutamine transport ATP-binding protein GlnQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 5.8662 6.5987 2 0.00027136 1080 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 130.31 80.952 21180000 6704100 7627300 6848600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6842 1053 6673 126999;127000;127001 78140;78141;78142 78142 3 GANLVNGLLYIDLER Unmodified 1658.8992 0.89917033 1033 P0C054 ibpA Small heat shock protein IbpA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 53.442 52.408 2 1.4119E-08 21104 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 144.1 132.78 74864000 0 0 0 0 4904800 4921400 5845600 0 0 10760000 14574000 11627000 0 0 0 4388100 4001800 5674500 0 0 0 3608900 4558000 0 6843 1033 6674 127002;127003;127004;127005;127006;127007;127008;127009;127010;127011;127012 78143;78144;78145;78146;78147;78148;78149;78150 78146 6 GANQAVAAGR Unmodified 913.47298 0.47297719 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.455 11.27 2 0.00017632 2475 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 123.45 101 450390000 35682000 41546000 30267000 0 0 0 46713000 38981000 35399000 0 0 0 36597000 31975000 37279000 0 0 0 37727000 36719000 41501000 0 0 0 6844 528 6675 127013;127014;127015;127016;127017;127018;127019;127020;127021;127022;127023;127024 78151 78151 1 GANQVVMGER Unmodified 1059.5131 0.51312744 1544 P39830 ybaL Inner membrane protein YbaL yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.071 14.725 2 0.00025577 4639 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.31 117.35 142660000 7483500 5725100 4622000 1665400 1910000 988890 15313000 11553000 12334000 3825000 4163200 3331000 8338000 8348200 9530500 711940 0 0 11146000 12207000 14455000 1959800 1497200 1549500 6845 1544 6676 127025;127026;127027;127028;127029;127030;127031;127032;127033;127034;127035;127036;127037;127038;127039;127040;127041;127042;127043;127044;127045;127046 78152;78153;78154;78155;78156;78157;78158;78159;78160;78161;78162 78159 11 GANVTLVSGPVSLPTPPFVK Unmodified 1979.1092 0.1091631 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.53 51.283 2 2.3438E-14 24200 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 144.68 139.69 149860000 11227000 13429000 11945000 0 0 0 11273000 11087000 11296000 0 0 0 13547000 11628000 11644000 0 0 0 14855000 15012000 12914000 0 0 0 6846 670 6677 127047;127048;127049;127050;127051;127052;127053;127054;127055;127056;127057;127058 78163;78164;78165 78163 3 GANVTSDK Unmodified 790.3821 0.38209649 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 4.9081 5.8147 2 0.0034662 1012 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 91.9 83.57 40894000 0 0 0 0 0 0 0 0 0 0 0 0 12161000 0 13694000 0 0 0 0 0 15039000 0 0 0 6847 1421 6678 127059;127060;127061 78166;78167 78167 2 GANVTVPFKEEAFAR Unmodified 1634.8417 0.84165545 1114 P15770 aroE Shikimate dehydrogenase (NADP(+)) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 29.975 28.693 2;3 1.8394E-06 13335 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.79 129.1 268740000 26521000 36190000 27325000 0 0 0 13919000 10172000 15711000 0 0 0 18847000 19129000 15650000 0 0 0 23348000 32676000 29254000 0 0 0 6848 1114 6679 127062;127063;127064;127065;127066;127067;127068;127069;127070;127071;127072;127073;127074;127075;127076;127077;127078;127079;127080;127081 78168;78169;78170;78171;78172;78173;78174;78175;78176;78177;78178;78179;78180;78181;78182 78174 15 GAPDVFEQFNTAVQK Unmodified 1649.8049 0.80493559 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1 2 1 2 2 2 1 1 1 41.375 40.294 2;3 2.9126E-20 15078 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 214.67 205.72 762020000 8181500 116360000 100080000 0 327950 0 0 3997200 0 0 0 0 2343300 23461000 4166400 213300000 138780000 141240000 4026100 2515100 3245000 0 0 0 6849 733 6680 127082;127083;127084;127085;127086;127087;127088;127089;127090;127091;127092;127093;127094;127095;127096;127097;127098;127099;127100;127101 78183;78184;78185;78186;78187;78188;78189;78190;78191 78183 9 GAPGGLIFQSICGSEK Unmodified 1619.7977 0.79774172 866 P0AEJ6 eutB Ethanolamine ammonia-lyase heavy chain yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 41.246 39.641 2 1.8048E-08 19186 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.12 122.59 38734000 0 10837000 9524000 0 0 0 0 2694700 0 0 0 0 0 5765000 0 0 0 0 0 6964600 2948700 0 0 0 6850 866 6681 127102;127103;127104;127105;127106;127107 78192 78192 1 GAPRPLPDTLATMTPQAYNSIQYDAEK Unmodified 2947.4386 0.4385721 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.942 40.243 3 1.9337E-22 18743 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 159.1 156.87 137390000 9284800 10208000 12193000 0 0 0 10518000 10855000 7253100 0 0 0 12189000 10534000 8949900 0 0 0 12478000 16789000 16135000 0 0 0 6851 1548 6682 127108;127109;127110;127111;127112;127113;127114;127115;127116;127117;127118;127119 78193;78194;78195;78196;78197;78198 78198 6 GAQALER Unmodified 743.3926 0.3926016 737 P0ACN4 allR HTH-type transcriptional repressor AllR yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 10.88 11.364 2 0.050331 2039 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 62.978 31.4 56723000 0 0 0 0 0 0 4298300 4810800 0 0 6436700 0 3733900 2503500 4155500 6886100 2126600 0 0 0 0 11303000 0 10469000 6852 737 6683 127120;127121;127122;127123;127124;127125;127126;127127;127128;127129;127130 78199;78200;78201;78202 78200 4 GAQATDIVVLVVAADDGVMPQTIEAIQHAK Unmodified 3059.5961 0.59613538 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 54.846 53.39 3;4 2.753E-23 26392 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 167.55 165.19 983680000 137530000 118820000 136720000 4076700 2835600 3404900 36800000 49831000 34316000 9982200 9233800 9538000 86079000 79964000 88100000 0 0 0 52711000 61957000 61767000 0 0 0 6853 297 6684 127131;127132;127133;127134;127135;127136;127137;127138;127139;127140;127141;127142;127143;127144;127145;127146;127147;127148;127149;127150;127151;127152;127153;127154;127155;127156;127157;127158;127159;127160 78203;78204;78205;78206;78207;78208 78205 6 GAQLFVTR Unmodified 890.4974 0.49740102 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 2 23.016 22.4 1;2 5.5033E-05 8086 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 170.06 119.94 6441300000 125670000 141780000 120810000 0 0 0 66900000 61959000 60437000 331900000 53550000 268600000 97504000 84735000 94031000 1016100000 872360000 1019100000 106810000 109310000 110110000 121610000 777850000 800150000 6854 935 6685 127161;127162;127163;127164;127165;127166;127167;127168;127169;127170;127171;127172;127173;127174;127175;127176;127177;127178;127179;127180;127181;127182;127183;127184;127185;127186;127187;127188;127189;127190;127191;127192;127193;127194;127195;127196;127197;127198;127199;127200 78209;78210;78211;78212;78213;78214;78215;78216;78217;78218;78219;78220 78211 8 GAQLQSAR Unmodified 829.44061 0.44061443 1 CON__ENSEMBL:ENSBTAP00000023055 yes yes 0 0 0 By MS/MS 1 10.594 10.447 2 0.003251 1862 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 92.822 26.365 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 6855 1 6686 127201 78221 78221 1 GAQNGCIIAGDNPDAALALEK Unmodified 2097.0161 0.016067355 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 37.358 35.82 2 2.6018E-21 17206 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 194.49 188.34 148340000 40428000 39794000 35322000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9900800 12305000 10594000 0 0 0 6856 238 6687 127202;127203;127204;127205;127206;127207 78222;78223;78224 78224 3 GAQPSVPWR Unmodified 996.51411 0.51411372 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.056 23.112 2 0.049581 10410 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.981 53.071 58618000 0 5129900 0 0 0 0 5643100 7739700 5050100 0 0 0 6587700 6345700 8644900 0 0 0 5420200 8056500 0 0 0 0 6857 528 6688 127208;127209;127210;127211;127212;127213;127214;127215;127216 78225;78226;78227 78226 0 GAQYPAEHNVGHLYK Unmodified 1682.8165 0.81650333 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 2 1 2 3 2 3 3 3 3 14.257 14.864 2;3;4 1.1225E-06 4113 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 134.13 128.03 980790000 49421000 43836000 45645000 14817000 8101900 13077000 87439000 99466000 101520000 79925000 81480000 65119000 42552000 22089000 22224000 14495000 7912900 14429000 33155000 36950000 32486000 20160000 21892000 22603000 6858 122 6689 127217;127218;127219;127220;127221;127222;127223;127224;127225;127226;127227;127228;127229;127230;127231;127232;127233;127234;127235;127236;127237;127238;127239;127240;127241;127242;127243;127244;127245;127246;127247;127248;127249;127250;127251;127252;127253;127254;127255;127256;127257;127258;127259;127260;127261;127262;127263;127264;127265;127266;127267;127268;127269;127270;127271;127272;127273;127274;127275;127276;127277;127278;127279;127280;127281;127282 78228;78229;78230;78231;78232;78233;78234;78235;78236;78237;78238;78239;78240;78241;78242;78243;78244;78245;78246;78247;78248;78249;78250;78251;78252;78253;78254;78255;78256 78231 29 GARPEPGVNK Unmodified 1023.5461 0.54614213 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.125 10.738 2 0.0027199 2389 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 83.948 49.14 210710000 7227900 4789800 0 0 0 0 2499000 0 0 0 0 0 8831400 11933000 11678000 52278000 34541000 31866000 16528000 11562000 16974000 0 0 0 6859 193 6690 127283;127284;127285;127286;127287;127288;127289;127290;127291;127292;127293;127294 78257;78258;78259;78260 78258 4 GASEAFISTLR Unmodified 1150.5982 0.59823728 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 20.787 20.7 2;3 4.1386E-10 14452 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 181.55 173.51 1552600000 161500000 140610000 115810000 5089100 4980200 5415500 70163000 72426000 76184000 17892000 14367000 10863000 117840000 96394000 114010000 21209000 20406000 21505000 144010000 150310000 148680000 8289500 8074300 6558900 6860 1429 6691 127295;127296;127297;127298;127299;127300;127301;127302;127303;127304;127305;127306;127307;127308;127309;127310;127311;127312;127313;127314;127315;127316;127317;127318;127319;127320;127321;127322;127323;127324;127325;127326;127327;127328;127329;127330 78261;78262;78263;78264;78265;78266;78267;78268;78269;78270;78271;78272;78273;78274;78275;78276;78277;78278;78279;78280 78273 20 GASGIDGLLSTAAGVQR Unmodified 1571.8267 0.82673367 1134 P17109 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 2 2 42.465 40.667 2 0.012662 20183 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 48.524 23.398 105890000 0 0 3375900 0 0 0 21253000 17591000 18186000 0 1408700 0 6183100 0 2828200 0 0 0 12876000 12221000 9963100 0 0 0 6861 1134 6692 127331;127332;127333;127334;127335;127336;127337;127338;127339;127340;127341;127342 78281;78282;78283 78281 1 GASGYLPEHTLPAK Unmodified 1439.7409 0.74087877 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 20.37 20.784 2;3 9.4971E-11 8137 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 186.74 175.52 2026900000 95150000 96753000 85632000 0 0 0 209330000 194700000 186340000 0 0 0 222000000 218610000 215870000 0 0 0 156850000 175770000 169900000 0 0 0 6862 213 6693 127343;127344;127345;127346;127347;127348;127349;127350;127351;127352;127353;127354;127355;127356;127357;127358;127359;127360;127361;127362;127363;127364;127365;127366 78284;78285;78286;78287;78288;78289;78290;78291;78292;78293;78294;78295;78296;78297;78298;78299;78300;78301;78302;78303;78304;78305 78292 22 GASIITTSSIQAYQPSPHLLDYAATK Unmodified 2732.4021 0.40211024 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.172 42.526 3 1.0071E-30 21211 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 187.29 180.49 418440000 89860000 110240000 93305000 0 0 0 48271000 40213000 36554000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6863 995 6694 127367;127368;127369;127370;127371;127372 78306;78307;78308;78309;78310;78311 78306 6 GASPLSAGDVTNDLSHVR Unmodified 1794.886 0.88603946 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 31.926 30.436 2;3 2.6243E-29 14604 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 218.5 213 897160000 49164000 41027000 32816000 10909000 9463300 10447000 102250000 93636000 86868000 36625000 33114000 32738000 50877000 46732000 52699000 4846000 4854800 7049200 50010000 53370000 57479000 10766000 8874000 10550000 6864 33 6695 127373;127374;127375;127376;127377;127378;127379;127380;127381;127382;127383;127384;127385;127386;127387;127388;127389;127390;127391;127392;127393;127394;127395;127396;127397;127398;127399;127400;127401;127402;127403;127404;127405;127406;127407;127408;127409;127410;127411;127412;127413;127414;127415;127416;127417 78312;78313;78314;78315;78316;78317;78318;78319;78320;78321;78322;78323;78324;78325;78326;78327;78328;78329;78330;78331;78332;78333 78321 21 GASQNIIPSSTGAAK Unmodified 1400.726 0.72595699 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 5 2 2 2 4 4 5 1 1 1 4 3 4 1 1 1 4 4 4 1 1 1 18.52 19.033 2;3 2.033E-11 7241 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.81 135.34 35355000000 2216000000 2291800000 1987400000 14029000 13260000 13621000 3774600000 4180700000 3607400000 9426500 10310000 10371000 2806200000 2389400000 2559100000 5755800 3080400 3344500 3077500000 3195300000 3167800000 6574700 6807700 5651200 6865 504 6696 127418;127419;127420;127421;127422;127423;127424;127425;127426;127427;127428;127429;127430;127431;127432;127433;127434;127435;127436;127437;127438;127439;127440;127441;127442;127443;127444;127445;127446;127447;127448;127449;127450;127451;127452;127453;127454;127455;127456;127457;127458;127459;127460;127461;127462;127463;127464;127465;127466;127467;127468;127469;127470;127471;127472;127473;127474;127475;127476;127477;127478;127479 78334;78335;78336;78337;78338;78339;78340;78341;78342;78343;78344;78345;78346;78347;78348;78349;78350;78351;78352;78353;78354;78355;78356;78357;78358;78359;78360;78361;78362;78363;78364;78365;78366;78367;78368;78369;78370;78371;78372;78373;78374;78375;78376;78377;78378;78379;78380 78337 47 GASYSWYLYSANR Unmodified 1536.6997 0.69974224 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.662 37.081 2 2.3053E-17 14453 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 208.63 201.74 95035000 0 0 0 1830000 0 0 0 0 3901100 4461200 6265700 5950500 0 0 0 1936800 1191500 734180 5112800 0 3123100 21589000 16672000 22268000 6866 205;1157 6697 127480;127481;127482;127483;127484;127485;127486;127487;127488;127489;127490;127491;127492 78381;78382;78383;78384;78385;78386 78384 6 GATAYQITEAR Unmodified 1179.5884 0.58840088 1699 P64614 yhcN Uncharacterized protein YhcN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.164 18.779 2 4.3519E-10 7257 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 180.44 175.09 216270000 38285000 41651000 33045000 0 0 0 21221000 15695000 16046000 0 0 0 6876700 5725700 4180700 0 0 0 12239000 11061000 10242000 0 0 0 6867 1699 6698 127493;127494;127495;127496;127497;127498;127499;127500;127501;127502;127503;127504 78387;78388;78389;78390;78391;78392;78393;78394 78387 8 GATAYVTLEPCSHHGR Unmodified 1754.8159 0.8158514 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.975 16.587 3 0.086373 5678 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 30.072 29.663 123850000 13328000 14271000 10647000 0 0 0 12715000 14296000 11980000 0 0 0 0 0 0 0 0 0 12745000 11720000 10555000 2526200 4160700 4903400 6868 1262 6699 127505;127506;127507;127508;127509;127510;127511;127512;127513;127514;127515;127516 78395 78395 0 GATGLGLK Unmodified 715.42284 0.4228391 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 0 By MS/MS 1 15.936 15.936 2 0.10317 4286 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 56.122 3.8226 49163000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49163000 0 0 0 0 0 0 0 0 6869 351 6700 127517 78396 78396 0 GATIAAGTTVTR Unmodified 1117.6091 0.60913632 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.052 15.867 2 2.5088E-05 5354 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 118.81 109.23 663370000 29339000 29317000 25049000 455320 0 0 68271000 61734000 61864000 0 0 0 56649000 52242000 59147000 0 0 0 82921000 66690000 69693000 0 0 0 6870 720 6701 127518;127519;127520;127521;127522;127523;127524;127525;127526;127527;127528;127529;127530 78397;78398;78399;78400;78401 78397 5 GATIVGHWPTAGYHFEASK Unmodified 2027.9854 0.98535957 1643 P61949 fldA Flavodoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 3 3 3 3 3 3 3 30.045 28.703 2;3;4 1.1365E-23 13417 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 202.13 186.58 2046300000 202960000 232560000 192750000 0 0 0 168520000 169090000 162020000 0 0 0 133550000 151650000 128400000 0 0 0 156220000 180940000 167610000 0 0 0 6871 1643 6702 127531;127532;127533;127534;127535;127536;127537;127538;127539;127540;127541;127542;127543;127544;127545;127546;127547;127548;127549;127550;127551;127552;127553;127554;127555;127556;127557;127558;127559;127560;127561;127562;127563;127564;127565 78402;78403;78404;78405;78406;78407;78408;78409;78410;78411;78412;78413;78414;78415;78416;78417;78418;78419;78420;78421;78422;78423;78424;78425;78426 78412 25 GATPAASDIQEAK Unmodified 1257.6201 0.62009493 1039 P0C0L7 proP Proline/betaine transporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.398 15.007 2 1.1702E-06 4817 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.59 127.47 487280000 23930000 27954000 20372000 4092700 4610500 4408600 46718000 55569000 41096000 15312000 14059000 11797000 34766000 33361000 31602000 0 1528600 0 33960000 30824000 39893000 3354700 4071700 4003900 6872 1039 6703 127566;127567;127568;127569;127570;127571;127572;127573;127574;127575;127576;127577;127578;127579;127580;127581;127582;127583;127584;127585;127586;127587 78427;78428;78429;78430;78431;78432;78433;78434;78435;78436;78437;78438;78439;78440;78441;78442;78443;78444;78445;78446 78443 18 GATTTFAER Unmodified 952.46141 0.46140945 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.078 13.954 2 7.9119E-05 4212 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 141.52 131.1 1697600000 132910000 132690000 148910000 867350 0 0 140120000 154950000 151440000 0 0 0 126450000 125890000 102100000 0 0 0 158110000 150190000 172960000 0 0 0 6873 1132 6704 127588;127589;127590;127591;127592;127593;127594;127595;127596;127597;127598;127599;127600 78447;78448;78449;78450;78451;78452;78453;78454;78455;78456 78451 10 GATVELADGVEGYLR Unmodified 1548.7784 0.77838649 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 2 2 2 4 7 3 2 2 4 5 3 5 2 4 4 5 4 4 1 2 1 43.635 42.152 2;3 2.0407E-35 16341 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 252.14 227.35 4063400000 341330000 322420000 292980000 30448000 34857000 36826000 203770000 271990000 171750000 77541000 76235000 81270000 314260000 310880000 319700000 85094000 61249000 58041000 350660000 255250000 252500000 40402000 39866000 34116000 6874 990 6705 127601;127602;127603;127604;127605;127606;127607;127608;127609;127610;127611;127612;127613;127614;127615;127616;127617;127618;127619;127620;127621;127622;127623;127624;127625;127626;127627;127628;127629;127630;127631;127632;127633;127634;127635;127636;127637;127638;127639;127640;127641;127642;127643;127644;127645;127646;127647;127648;127649;127650;127651;127652;127653;127654;127655;127656;127657;127658;127659;127660;127661;127662;127663;127664;127665;127666;127667;127668;127669;127670;127671;127672;127673;127674;127675;127676;127677;127678 78457;78458;78459;78460;78461;78462;78463;78464;78465;78466;78467;78468;78469;78470;78471;78472;78473;78474;78475;78476;78477;78478;78479;78480;78481;78482;78483;78484;78485;78486;78487;78488;78489;78490;78491;78492;78493;78494;78495;78496;78497;78498;78499;78500;78501;78502;78503;78504;78505;78506;78507;78508;78509;78510;78511;78512;78513;78514;78515;78516;78517;78518;78519;78520;78521;78522;78523;78524;78525;78526;78527;78528;78529 78465 64 GATVLPHGTGR Unmodified 1064.5727 0.57269123 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 1 1 12.188 12.794 2;3 8.608E-05 3601 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.75 132.01 7664100000 970590000 1015800000 902250000 52208000 33545000 38300000 336450000 337190000 300990000 82042000 67584000 69914000 487790000 419750000 426110000 93014000 62950000 66044000 769870000 290180000 751180000 30233000 32401000 27704000 6875 353 6706 127679;127680;127681;127682;127683;127684;127685;127686;127687;127688;127689;127690;127691;127692;127693;127694;127695;127696;127697;127698;127699;127700;127701;127702;127703;127704;127705;127706;127707;127708;127709;127710;127711;127712;127713;127714;127715;127716;127717;127718;127719;127720 78530;78531;78532;78533;78534;78535;78536;78537;78538;78539;78540;78541;78542;78543;78544;78545;78546;78547;78548;78549;78550;78551;78552;78553;78554;78555;78556;78557;78558;78559 78550 30 GATVTTAESCTGGWVAK Unmodified 1694.7934 0.79338463 242 P0A6G3 pncC Nicotinamide-nucleotide amidohydrolase PncC yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 24.856 23.834 2 1.0803E-10 10193 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 149.49 140.54 81758000 0 9521000 5872900 0 0 0 11873000 11760000 9114000 0 0 0 5109100 6279200 0 0 0 0 5038400 7588700 9600800 0 0 0 6876 242 6707 127721;127722;127723;127724;127725;127726;127727;127728;127729;127730 78560;78561;78562;78563;78564 78563 3 GAVASLTSVAK Unmodified 1002.571 0.5709599 212;1559 P09373;P42632 pflB;tdcE Formate acetyltransferase 1;PFL-like enzyme TdcE no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 2 1 3 4 4 2 2 2 2 3 2 2 2 2 3 2 3 1 2 1 20.767 20.889 1;2 8.8048E-05 8356 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.13 100.67 33841000000 1502900000 1367200000 1296600000 27892000 29359000 27808000 4211800000 4578800000 4755700000 43666000 48602000 48647000 3199200000 2940900000 2772600000 23582000 17657000 18293000 2240100000 2473300000 2140600000 27472000 27854000 20354000 6877 212;1559 6708 127731;127732;127733;127734;127735;127736;127737;127738;127739;127740;127741;127742;127743;127744;127745;127746;127747;127748;127749;127750;127751;127752;127753;127754;127755;127756;127757;127758;127759;127760;127761;127762;127763;127764;127765;127766;127767;127768;127769;127770;127771;127772;127773;127774;127775;127776;127777;127778;127779;127780;127781;127782;127783;127784 78565;78566;78567;78568;78569;78570;78571;78572;78573;78574;78575;78576;78577;78578;78579;78580;78581;78582;78583;78584;78585;78586;78587;78588 78583 22 GAVETAEK Unmodified 803.4025 0.40249759 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 8.4909 9.3781 2 0.00096947 2045 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 115.46 76.241 1705600000 226200000 105700000 70205000 115470 449590 100970 198610000 175800000 160370000 0 0 113360 104430000 112720000 65399000 0 0 0 164020000 161400000 159980000 0 0 0 6878 771 6709 127785;127786;127787;127788;127789;127790;127791;127792;127793;127794;127795;127796;127797;127798;127799;127800;127801;127802 78589;78590;78591;78592;78593;78594;78595;78596;78597;78598;78599;78600;78601 78596 13 GAVLASEQALR Unmodified 1113.6142 0.6142217 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.209 21.477 2 1.4739E-05 8390 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.04 99.934 2293700000 288330000 242880000 240030000 930060 1147100 1033700 250810000 253070000 183950000 0 718550 0 127760000 110670000 104880000 0 0 0 152510000 177940000 157040000 0 0 0 6879 1154 6710 127803;127804;127805;127806;127807;127808;127809;127810;127811;127812;127813;127814;127815;127816;127817;127818 78602;78603;78604;78605;78606;78607;78608;78609;78610;78611;78612;78613 78610 12 GAVNYLSVPEFPTDSK Unmodified 1722.8465 0.84646606 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 44.084 42.522 2 1.0565E-10 20026 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 154.41 152.78 1181300000 13236000 7130700 11036000 0 0 0 99569000 86711000 74169000 0 0 0 138370000 123060000 127320000 0 0 0 172890000 151570000 156570000 0 9072600 10621000 6880 723 6711 127819;127820;127821;127822;127823;127824;127825;127826;127827;127828;127829;127830;127831;127832;127833 78614;78615;78616;78617;78618;78619;78620;78621;78622;78623;78624;78625 78623 12 GAVPGATGSDLIVK Unmodified 1283.7085 0.70851601 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.086 26.939 2 0.00022735 12286 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 82.417 51.853 593990000 102150000 89339000 73429000 0 0 0 26945000 19297000 20834000 0 0 0 33297000 34076000 32611000 0 0 0 53737000 53420000 54856000 0 0 0 6881 1621 6712 127834;127835;127836;127837;127838;127839;127840;127841;127842;127843;127844;127845 78626;78627;78628;78629;78630;78631;78632;78633;78634;78635;78636 78631 11 GAVPGATGSDLIVKPAVK Unmodified 1678.9618 0.96177059 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 26.678 25.542 2;3 2.5697E-06 11914 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 136.38 130.89 13662000000 1808100000 1797300000 1481300000 56328000 54466000 53529000 536050000 578260000 502540000 123090000 116330000 115210000 791990000 773460000 740940000 94917000 57746000 59834000 1204400000 1171600000 1212500000 109980000 103810000 118180000 6882 1621 6713 127846;127847;127848;127849;127850;127851;127852;127853;127854;127855;127856;127857;127858;127859;127860;127861;127862;127863;127864;127865;127866;127867;127868;127869;127870;127871;127872;127873;127874;127875;127876;127877;127878;127879;127880;127881;127882;127883;127884;127885;127886;127887;127888;127889;127890;127891;127892;127893 78637;78638;78639;78640;78641;78642;78643;78644;78645;78646;78647;78648;78649;78650;78651;78652;78653;78654;78655;78656;78657;78658;78659;78660;78661;78662;78663;78664;78665;78666;78667;78668;78669;78670;78671;78672;78673;78674;78675;78676;78677;78678;78679;78680;78681;78682;78683;78684 78650 48 GAVPGATGSDLIVKPAVKA Unmodified 1749.9989 0.99888437 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 28.175 26.893 2;3 9.5416E-06 9046 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 91.858 88.729 422950000 0 0 0 36310000 30259000 37323000 0 0 0 33097000 31027000 37297000 0 0 0 39306000 31282000 30395000 0 0 0 36817000 42194000 37642000 6883 1621 6714 127894;127895;127896;127897;127898;127899;127900;127901;127902;127903;127904;127905;127906;127907;127908;127909;127910;127911;127912;127913;127914;127915;127916;127917 78685;78686;78687;78688;78689;78690;78691;78692;78693;78694;78695;78696;78697;78698;78699;78700;78701;78702;78703;78704;78705;78706 78704 22 GAVPYAYTANLGQPDEEDYDAIPR Unmodified 2624.2031 0.20307608 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 44.611 43.096 2;3 9.1258E-22 21153 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 231.13 226.41 247860000 35857000 33317000 35585000 0 0 0 17550000 18485000 17055000 0 0 0 12902000 11143000 11217000 0 0 0 18134000 18120000 18492000 0 0 0 6884 235 6715 127918;127919;127920;127921;127922;127923;127924;127925;127926;127927;127928;127929;127930;127931;127932;127933;127934;127935;127936;127937;127938;127939;127940;127941 78707;78708;78709;78710;78711;78712;78713;78714 78711 8 GAVQGIAELITR Unmodified 1226.6983 0.69828568 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 42.307 40.481 2;3 1.7973E-06 19564 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.11 115.03 879590000 82503000 81386000 75002000 0 0 0 70338000 72082000 72521000 4813400 5680600 4753800 57672000 49184000 45875000 0 0 0 81414000 87127000 84485000 1899600 1588100 1271100 6885 502 6716 127942;127943;127944;127945;127946;127947;127948;127949;127950;127951;127952;127953;127954;127955;127956;127957;127958;127959;127960;127961;127962;127963;127964;127965;127966;127967;127968;127969;127970;127971 78715;78716;78717;78718;78719;78720;78721;78722;78723;78724;78725;78726;78727;78728;78729 78726 14 GAVQGIAELITRPGLMNVDFADVR Unmodified 2541.3373 0.33734191 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 1 1 2 54.096 52.81 3;4 2.6873E-30 21204 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 182.13 173.37 2839400000 218980000 216400000 205950000 43568000 41168000 58368000 150680000 152930000 162660000 21332000 206660000 178490000 130550000 127840000 111820000 16633000 18991000 34027000 221970000 186120000 184490000 45872000 49286000 54563000 6886 502 6717 127972;127973;127974;127975;127976;127977;127978;127979;127980;127981;127982;127983;127984;127985;127986;127987;127988;127989;127990;127991;127992;127993;127994;127995;127996;127997;127998;127999;128000;128001;128002;128003;128004;128005;128006;128007;128008;128009;128010;128011;128012;128013 78730;78731;78732;78733;78734;78735;78736;78737;78738;78739;78740;78741;78742;78743;78744;78745;78746;78747;78748;78749 78735 20 GAVSEYEALHEIFK Unmodified 1591.7882 0.7882229 1335 P30014 rnt Ribonuclease T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.953 38.279 3 0.0021138 18666 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.185 55.955 307970000 21558000 22458000 23305000 0 0 0 22218000 23796000 23989000 0 0 0 24652000 21887000 23468000 0 0 0 34133000 36921000 29589000 0 0 0 6887 1335 6718 128014;128015;128016;128017;128018;128019;128020;128021;128022;128023;128024;128025 78750;78751;78752;78753;78754;78755;78756;78757;78758;78759;78760;78761 78756 12 GAVSVLDNLSPIK Unmodified 1311.7398 0.73981614 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 43.581 42.066 2 2.372E-05 20597 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.57 120.8 163660000 20093000 0 19823000 0 0 0 0 16116000 20371000 0 0 0 0 15860000 19007000 0 0 0 25679000 0 26710000 0 0 0 6888 1794 6719 128026;128027;128028;128029;128030;128031;128032;128033 78762;78763;78764 78763 3 GAVVDNTALLTCLNEGQK Unmodified 1901.9517 0.95167618 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1 1 2 2 1 2 2 2 2 2 2 39.618 37.963 2;3 6.1941E-45 18469 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 311.7 306.22 744330000 69981000 60243000 62568000 1564500 407240 1102200 65443000 61962000 44885000 0 0 0 64766000 54976000 54140000 0 0 0 70337000 69702000 62253000 0 0 0 6889 111 6720 128034;128035;128036;128037;128038;128039;128040;128041;128042;128043;128044;128045;128046;128047;128048;128049;128050;128051;128052;128053;128054;128055;128056;128057;128058;128059;128060 78765;78766;78767;78768;78769;78770;78771;78772;78773;78774;78775;78776;78777;78778;78779;78780;78781;78782;78783 78770 17 GAWALTDALHIK Unmodified 1294.7034 0.70337105 552 P0A9S1 fucO Lactaldehyde reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.479 38.814 3 0.0029636 18948 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.944 60.815 147020000 22030000 20192000 16253000 0 0 0 18148000 13608000 15872000 0 0 0 9206900 8009300 6568800 0 0 0 5528800 6959100 4648500 0 0 0 6890 552 6721 128061;128062;128063;128064;128065;128066;128067;128068;128069;128070;128071;128072 78784;78785;78786;78787;78788;78789;78790;78791;78792;78793 78788 10 GAYEMAYSQQENALWLATSQSR Unmodified 2503.1438 0.14378706 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 2 2 2 47.037 45.675 2;3 2.739E-64 22242 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 293.35 290.72 395420000 8747300 6736800 8548100 0 3604200 0 8745400 8417700 28870000 8194300 6098100 5301800 50012000 53901000 54207000 7072200 6147800 7396400 23965000 22276000 22919000 17257000 18154000 18847000 6891 1819 6722 128073;128074;128075;128076;128077;128078;128079;128080;128081;128082;128083;128084;128085;128086;128087;128088;128089;128090;128091;128092;128093;128094;128095;128096;128097;128098;128099;128100;128101 78794;78795;78796;78797;78798;78799;78800;78801;78802;78803;78804;78805;78806;78807;78808;78809;78810;78811 78804 18 GAYGTVIMDSR Unmodified 1168.5547 0.55465791 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.333 24.25 2 1.2285E-06 11075 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.62 134.12 2392200000 183510000 183870000 173210000 0 0 1596200 208080000 201960000 211950000 0 0 0 194450000 188790000 174180000 0 0 0 224230000 240270000 206070000 0 0 0 6892 1137 6723 128102;128103;128104;128105;128106;128107;128108;128109;128110;128111;128112;128113;128114 78812;78813;78814;78815;78816;78817;78818;78819;78820;78821;78822;78823;78824;78825;78826 78813 15 GAYPGWQPDANSPVMHLVR Unmodified 2094.0105 0.010528467 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 3 3 3 3 3 3 40.31 38.641 2;3;4 3.0126E-17 18825 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 206.69 197.4 7425600000 791740000 749200000 638920000 0 2066100 1418600 684120000 680820000 746000000 0 0 0 416520000 515480000 404470000 0 0 0 576320000 642800000 575690000 0 0 0 6893 1109 6724 128115;128116;128117;128118;128119;128120;128121;128122;128123;128124;128125;128126;128127;128128;128129;128130;128131;128132;128133;128134;128135;128136;128137;128138;128139;128140;128141;128142;128143;128144;128145;128146;128147;128148;128149;128150;128151;128152 78827;78828;78829;78830;78831;78832;78833;78834;78835;78836;78837;78838;78839;78840 78834 13 GAYSPASQIR Unmodified 1048.5302 0.53015772 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.316 27.068 3 0.1658 12349 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 16.138 8.7575 100550000 9260400 8617300 8807400 0 0 0 7823700 5356500 5079000 0 0 0 5714500 7457300 9844700 0 0 0 10576000 10156000 11855000 0 0 0 6894 1787 6725 128153;128154;128155;128156;128157;128158;128159;128160;128161;128162;128163;128164 78841;78842;78843;78844;78845;78846;78847 78844 7 GAYWDSEIK Unmodified 1067.4924 0.49237523 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 27.462 26.276 2 0.12643 11974 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 43.808 36.578 185850000 10727000 11434000 12549000 0 0 0 8890900 10825000 11565000 0 0 0 11284000 7286800 9862000 0 0 0 28742000 28645000 31331000 2703900 0 0 6895 215 6726 128165;128166;128167;128168;128169;128170;128171;128172;128173;128174;128175;128176;128177 78848 78848 0 GAYWDSEIKR Unmodified 1223.5935 0.59348625 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 3 3 3 2 2 2 2 2 2 20.324 20.489 2;3 7.4108E-05 6315 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 127.56 91.17 780840000 30508000 28339000 24304000 19835000 18127000 13505000 31227000 22839000 23779000 31859000 26064000 21614000 27310000 20040000 21882000 18398000 17745000 16460000 79584000 82628000 77868000 47002000 40223000 39702000 6896 215 6727 128178;128179;128180;128181;128182;128183;128184;128185;128186;128187;128188;128189;128190;128191;128192;128193;128194;128195;128196;128197;128198;128199;128200;128201;128202;128203;128204;128205;128206;128207;128208;128209;128210;128211;128212;128213;128214;128215;128216;128217;128218;128219;128220;128221;128222;128223;128224;128225;128226;128227 78849;78850;78851;78852;78853;78854;78855;78856;78857;78858;78859;78860;78861;78862;78863;78864;78865;78866;78867;78868 78859 20 GCAIDIGTVIDNDNCTSK Unmodified 1951.8615 0.86154055 1391 P32162 yiiS UPF0381 protein YiiS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 37.129 35.262 2;3 9.9238E-56 16386 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 289.45 289.31 656880000 61582000 61959000 52015000 2032700 2163600 0 101080000 90750000 86095000 25019000 21176000 21052000 21849000 23953000 21667000 0 0 0 22202000 16007000 22737000 893560 1105200 1544400 6897 1391 6728 128228;128229;128230;128231;128232;128233;128234;128235;128236;128237;128238;128239;128240;128241;128242;128243;128244;128245;128246;128247;128248;128249;128250;128251;128252;128253;128254;128255;128256;128257;128258;128259;128260 78869;78870;78871;78872;78873;78874;78875;78876;78877;78878;78879;78880;78881;78882;78883;78884;78885;78886;78887;78888;78889 78888 21 GCDGPWGPHAK Unmodified 1180.5084 0.50837642 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 12.964 13.584 2;3 0.00014184 4127 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.95 111.95 1116500000 57141000 57082000 64267000 20523000 22730000 21016000 62487000 57660000 54339000 15018000 8954600 10450000 78758000 59789000 68038000 9243300 6082600 6911600 131370000 132300000 117170000 13913000 19743000 21545000 6898 698 6729 128261;128262;128263;128264;128265;128266;128267;128268;128269;128270;128271;128272;128273;128274;128275;128276;128277;128278;128279;128280;128281;128282;128283;128284;128285;128286;128287;128288;128289;128290;128291;128292;128293;128294;128295;128296;128297;128298;128299;128300;128301;128302;128303;128304;128305;128306;128307 78890;78891;78892;78893;78894;78895;78896;78897;78898;78899;78900;78901;78902;78903;78904;78905;78906;78907;78908;78909;78910;78911;78912 78907 19 GCETKPITGLAGK Unmodified 1330.6915 0.69148574 1271 P25742 rfaQ Lipopolysaccharide core heptosyltransferase RfaQ yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.298 14.966 2 0.14417 4167 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 51.268 46.816 35889000 0 0 0 0 0 0 4482300 3874100 0 1629100 1644300 1609000 2667700 2350000 4289400 0 0 0 5355600 3717500 4270100 0 0 0 6899 1271 6730 128308;128309;128310;128311;128312;128313;128314;128315;128316;128317;128318 78913 78913 1 GCETNGFNYFDK Unmodified 1450.5823 0.58232922 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 30.699 29.56 2 3.1659E-05 13771 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.93 113.93 62134000 23985000 20414000 17735000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6900 1816 6731 128319;128320;128321 78914;78915;78916 78915 2 GCFLNAPDMYMEK Unmodified 1574.6568 0.65675649 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.997 38.332 2 8.6546E-07 18636 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.22 138.04 374670000 20304000 18800000 19120000 0 0 0 32206000 26057000 28022000 0 0 0 37458000 37979000 35152000 0 0 0 39506000 40612000 39450000 0 0 0 6901 509 6732 128322;128323;128324;128325;128326;128327;128328;128329;128330;128331;128332;128333 78917;78918;78919;78920;78921;78922;78923;78924;78925;78926;78927;78928 78921 12 GCGALDWGMQSR Unmodified 1336.5652 0.56523937 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 31.704 30.373 2 4.2643E-08 14305 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.99 152.21 343620000 106080000 104590000 112840000 0 0 0 4710600 0 3358800 0 0 0 0 2455700 2044100 0 0 0 4365000 0 3174400 0 0 0 6902 1822 6733 128334;128335;128336;128337;128338;128339;128340;128341;128342 78929;78930;78931 78929 3 GCGDSAITAHQR Unmodified 1271.5677 0.56768221 907 P0AF26 narJ Nitrate reductase molybdenum cofactor assembly chaperone NarJ yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 2 2 2 1 2 2 1 2 2 1 2 10.817 11.573 2;3 2.9553E-23 2820 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 233.46 228.85 196970000 15623000 5585100 11531000 0 0 1141500 20531000 18015000 17128000 0 0 3776300 13787000 15896000 7525700 0 0 0 36066000 12640000 11440000 0 6280600 0 6903 907 6734 128343;128344;128345;128346;128347;128348;128349;128350;128351;128352;128353;128354;128355;128356;128357;128358;128359;128360;128361;128362;128363;128364;128365;128366;128367 78932;78933;78934;78935;78936;78937;78938;78939 78936 8 GCGITVDQAER Unmodified 1204.5506 0.55063516 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.996 16.548 2 3.8627E-10 5778 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 182.98 177.62 3279000000 289410000 312980000 288990000 5843700 6784200 5086700 275680000 310600000 275380000 19548000 17158000 11817000 223620000 191690000 188010000 4707200 2630300 2654600 289340000 273710000 267130000 6503700 4574400 5177900 6904 62 6735 128368;128369;128370;128371;128372;128373;128374;128375;128376;128377;128378;128379;128380;128381;128382;128383;128384;128385;128386;128387;128388;128389;128390;128391 78940;78941;78942;78943;78944;78945;78946;78947;78948;78949;78950;78951;78952;78953;78954;78955;78956;78957;78958;78959;78960;78961;78962;78963 78947 24 GCHLDAQMIADAAPR Unmodified 1624.745 0.74499465 603 P0AAN3 hypB Hydrogenase isoenzymes nickel incorporation protein HypB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.839 26.692 3 2.2137E-07 11713 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 105.14 102.5 338190000 14564000 12524000 12139000 0 0 0 39394000 37771000 31327000 0 0 0 37727000 28004000 26531000 0 0 0 32818000 36554000 28834000 0 0 0 6905 603 6736 128392;128393;128394;128395;128396;128397;128398;128399;128400;128401;128402;128403 78964;78965;78966;78967;78968;78969 78968 5 GCIMGSAHQR Unmodified 1115.4964 0.49643152 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.845 11.661 2 0.00019016 2815 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.18 112.59 279770000 15848000 16051000 18008000 0 0 0 22233000 26204000 28991000 0 0 0 19067000 23632000 22328000 0 0 0 28613000 28552000 30245000 0 0 0 6906 1313 6737 128404;128405;128406;128407;128408;128409;128410;128411;128412;128413;128414;128415 78970;78971;78972 78970 3 GCLTQMGDIPLDIK Unmodified 1559.7687 0.76874978 1075 P12008 aroC Chorismate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.552 43.037 2 3.5234E-06 21077 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.39 102.75 363340000 61906000 62188000 55536000 0 0 0 15538000 17934000 15425000 0 0 0 21581000 16231000 18908000 0 0 0 27249000 24930000 25910000 0 0 0 6907 1075 6738 128416;128417;128418;128419;128420;128421;128422;128423;128424;128425;128426;128427 78973;78974;78975;78976;78977;78978;78979 78974 7 GCPFQPR Unmodified 860.39631 0.39630677 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.479 15.108 2 0.0023513 3613 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 113.82 109.97 377870000 52333000 50802000 49898000 16004000 15535000 14996000 18442000 18588000 17242000 7124000 6830700 6981400 13500000 13570000 11111000 0 0 0 17905000 17448000 16257000 5130500 3451400 4717000 6908 1807 6739 128428;128429;128430;128431;128432;128433;128434;128435;128436;128437;128438;128439;128440;128441;128442;128443;128444;128445;128446;128447;128448 78980;78981;78982;78983;78984;78985;78986;78987;78988;78989;78990;78991;78992;78993;78994;78995;78996 78988 17 GCQLMQAGTHPDYYTLAPEK Unmodified 2279.0351 0.035088237 1319 P28631 holB DNA polymerase III subunit delta' yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 31.573 30.261 3 0.0023287 14272 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 56.9 48.749 77884000 10472000 8169400 8777200 0 0 0 5984400 0 7200000 0 0 0 3433400 6680300 4321000 0 0 0 8571000 6866700 7409000 0 0 0 6909 1319 6740 128449;128450;128451;128452;128453;128454;128455;128456;128457;128458;128459 78997;78998;78999 78997 3 GCSADAER Unmodified 864.33958 0.33957975 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 4.787 5.6751 2 0.0020762 1076 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.1 113.1 492690000 0 0 0 0 0 0 69798000 65188000 66488000 0 0 0 47710000 38688000 48317000 0 0 0 50439000 57523000 48535000 0 0 0 6910 158 6741 128460;128461;128462;128463;128464;128465;128466;128467;128468 79000;79001;79002 79000 2 GCYTGQEMVAR Unmodified 1270.5434 0.54344129 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.382 17.161 2 1.4177E-19 6208 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 228.39 224.46 859680000 102730000 91079000 80055000 930120 1105000 0 68389000 65846000 65979000 0 0 688500 67178000 53757000 44939000 0 0 0 66264000 75964000 74770000 0 0 0 6911 784 6742 128469;128470;128471;128472;128473;128474;128475;128476;128477;128478;128479;128480;128481;128482;128483 79003;79004;79005;79006;79007;79008;79009;79010;79011;79012;79013;79014 79003 12 GDAAAPTCILLK Unmodified 1228.6486 0.64855829 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 32.276 30.867 2 0.0011651 14594 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 75.197 72.462 888950000 0 352650000 0 0 0 0 78850000 71168000 74189000 0 0 0 39172000 38392000 0 0 0 0 75753000 82970000 75807000 0 0 0 6912 1465 6743 128484;128485;128486;128487;128488;128489;128490;128491;128492 79015;79016;79017;79018;79019;79020;79021;79022 79017 8 GDADMVSMAR Unmodified 1051.4427 0.44266462 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 20.335 20.872 2 1.3115E-06 8230 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.3 155.83 58904000 21282000 19361000 17130000 0 0 0 0 0 0 0 0 0 0 1131500 0 0 0 0 0 0 0 0 0 0 6913 1554 6744 128493;128494;128495;128496 79023;79024;79025 79023 3 GDAELAQSISMTR Unmodified 1377.6558 0.65582851 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 28.988 27.677 2;3 1.0068E-23 12279 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 228.98 211.76 1612000000 100410000 97911000 87342000 859270 1350900 594220 124770000 126960000 116060000 0 0 0 125490000 116030000 124050000 0 0 0 181080000 209560000 196250000 1357200 1870500 0 6914 1236 6745 128497;128498;128499;128500;128501;128502;128503;128504;128505;128506;128507;128508;128509;128510;128511;128512;128513;128514;128515;128516;128517;128518;128519;128520;128521;128522;128523;128524;128525 79026;79027;79028;79029;79030;79031;79032;79033;79034;79035;79036;79037;79038 79035 13 GDAELAQSISMTR Oxidation (M) 1393.6507 0.65074314 1236 P24182 accC Biotin carboxylase yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 23.256 22.457 2 0.014473 9205 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 59.265 48.113 33945000 0 0 0 0 0 0 3847900 2839400 5036800 0 0 0 3907500 4451200 4899700 0 0 0 0 4724100 4238000 0 0 0 6915 1236 6745 128526;128527;128528;128529;128530;128531;128532;128533 79039;79040;79041 79041 516 3 GDALDHLLIFGPPGLGK Unmodified 1718.9356 0.93555583 387 P0A812 ruvB Holliday junction ATP-dependent DNA helicase RuvB yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 52.53 51.283 3 0.013472 24973 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 37.583 35.513 118170000 14428000 11276000 13683000 0 0 0 10209000 10359000 10834000 0 0 0 7587200 8943400 7929800 0 0 0 0 12400000 10521000 0 0 0 6916 387 6746 128534;128535;128536;128537;128538;128539;128540;128541;128542;128543;128544 79042;79043;79044;79045;79046;79047;79048;79049;79050;79051 79045 0 GDALTLVELTPAQHFTKPPAR Unmodified 2261.2168 0.21681607 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.811 35.115 3 2.1832E-15 16910 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.1 145.47 509150000 37351000 29499000 30039000 0 0 0 41341000 40561000 37938000 0 0 0 42056000 36245000 39309000 0 0 0 64129000 58949000 48951000 0 1458600 1321700 6917 124 6747 128545;128546;128547;128548;128549;128550;128551;128552;128553;128554;128555;128556;128557;128558 79052;79053;79054;79055;79056;79057;79058;79059;79060;79061 79056 10 GDATVLVVGADDKVETRPIVASQAIGDK Unmodified 2823.4978 0.49780154 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 2 2 34.302 32.672 3;4 5.5729E-41 15990 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 205.67 195.27 724690000 13475000 11100000 14851000 10842000 13913000 12193000 24059000 23412000 20994000 46120000 55034000 48506000 11930000 10822000 41452000 2664000 0 6932000 96420000 94002000 97117000 25357000 22042000 21452000 6918 826 6748 128559;128560;128561;128562;128563;128564;128565;128566;128567;128568;128569;128570;128571;128572;128573;128574;128575;128576;128577;128578;128579;128580;128581;128582;128583;128584;128585;128586;128587;128588;128589;128590;128591;128592;128593;128594 79062;79063;79064;79065;79066;79067;79068;79069;79070;79071;79072;79073;79074;79075;79076;79077;79078;79079;79080;79081;79082;79083;79084;79085;79086;79087;79088;79089;79090 79069 29 GDAVDIAVDPIEGTR Unmodified 1526.7577 0.75765105 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.1 36.406 2 4.4753E-09 17859 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.34 141.07 473910000 26747000 24942000 0 668220 0 0 49422000 48424000 43179000 0 0 0 51333000 45969000 46773000 0 0 0 49954000 43869000 42625000 0 0 0 6919 509 6749 128595;128596;128597;128598;128599;128600;128601;128602;128603;128604;128605;128606 79091;79092;79093;79094;79095;79096;79097;79098;79099;79100 79093 9 GDAWIDVVNPATEAVISR Unmodified 1911.969 0.96904081 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 1 51.568 50.309 2;3 4.2897E-45 23574 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 259.48 245.45 6079100000 1451400000 1376600000 1283500000 1727900 2232400 3628500 199350000 174070000 176370000 0 0 0 180890000 162860000 41346000 0 0 0 341380000 346450000 335670000 1642500 0 0 6920 1264 6750 128607;128608;128609;128610;128611;128612;128613;128614;128615;128616;128617;128618;128619;128620;128621;128622;128623;128624;128625;128626;128627;128628;128629;128630;128631;128632;128633;128634 79101;79102;79103;79104;79105;79106;79107;79108;79109;79110;79111;79112;79113;79114;79115;79116;79117;79118;79119;79120;79121;79122 79120 22 GDDDKWHK Unmodified 999.44101 0.44100836 836 P0AE63 chaB Cation transport regulator ChaB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 7.5093 8.3102 2 0.02083 1810 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.738 67.398 22219000 7171100 5762000 7103900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 646340 670400 865080 0 0 0 6921 836 6751 128635;128636;128637;128638;128639;128640 79123;79124;79125 79123 3 GDDIVDTVTLTR Unmodified 1303.662 0.66195975 266 P0A6N8 yeiP Elongation factor P-like protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 36.547 34.937 2 0.00056303 15951 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 82.417 70.37 31824000 7030000 8178700 6856600 0 0 0 2677500 3403600 0 0 0 0 0 1775300 0 0 0 0 0 1902900 0 0 0 0 6922 266 6752 128641;128642;128643;128644;128645;128646;128647;128648;128649;128650;128651 79126;79127;79128;79129;79130 79130 5 GDDLAEQAQALSNR Unmodified 1486.7012 0.7011988 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 28.892 27.621 2 2.8474E-11 13084 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 209.97 203.43 234770000 30312000 31760000 33406000 0 604460 0 17904000 19055000 20178000 0 0 0 15460000 14194000 10670000 0 0 0 12448000 12854000 15925000 0 0 0 6923 88 6753 128652;128653;128654;128655;128656;128657;128658;128659;128660;128661;128662;128663;128664 79131;79132;79133;79134;79135;79136;79137;79138;79139;79140;79141 79131 9 GDDLLGIYADAIR Unmodified 1390.7092 0.70924429 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 51.249 49.888 2 5.8752E-05 24224 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 90.05 84.269 43568000 0 0 0 0 0 0 6821300 7454500 5170900 0 0 0 0 0 0 0 0 0 9828800 14293000 0 0 0 0 6924 1148 6754 128665;128666;128667;128668;128669;128670 79142;79143;79144 79143 3 GDDNKNSGDAPAAAPGNNETTEPVGTTK Unmodified 2727.222 0.22197362 1695 P64604 mlaD Probable phospholipid ABC transporter-binding protein MlaD yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.49 14.821 3 4.5378E-16 3980 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 144.45 141.84 90147000 0 0 0 2162500 2573900 1876800 0 0 0 17311000 16921000 15750000 0 0 0 3927300 3756100 3909000 0 0 0 7539200 6539000 7880000 6925 1695 6755 128671;128672;128673;128674;128675;128676;128677;128678;128679;128680;128681;128682 79145;79146;79147;79148;79149;79150;79151;79152;79153 79148 9 GDEAQPNEEGLK Unmodified 1285.5786 0.57862405 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.522 13.309 2 3.4087E-06 3802 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 135.55 135.55 652690000 48401000 46900000 40557000 2865800 1933200 3020800 51416000 60971000 50959000 0 2088000 3677000 64862000 56473000 60762000 0 0 0 50212000 51381000 53118000 3095400 0 0 6926 1956 6756 128683;128684;128685;128686;128687;128688;128689;128690;128691;128692;128693;128694;128695;128696;128697;128698;128699;128700 79154 79154 1 GDEATFWK Unmodified 952.42905 0.42904669 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.248 26 2 0.0021654 12164 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 102.77 97.235 406850000 6777300 7881100 6941800 0 0 0 48686000 49152000 45040000 0 716760 0 39900000 38906000 35530000 0 0 0 39791000 46299000 40596000 635740 0 0 6927 1323 6757 128701;128702;128703;128704;128705;128706;128707;128708;128709;128710;128711;128712;128713;128714 79155;79156;79157;79158;79159;79160;79161;79162;79163;79164 79155 9 GDEAYSGSR Unmodified 940.38864 0.38863844 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.456 11.263 2 1.5326E-05 2576 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 159.46 159.46 7912100000 1476400000 1442900000 1311500000 8958300 6946500 8982100 689410000 669190000 640480000 0 0 0 300230000 254750000 306860000 0 2052400 0 286310000 250590000 256540000 0 0 0 6928 397 6758 128715;128716;128717;128718;128719;128720;128721;128722;128723;128724;128725;128726;128727;128728;128729;128730 79165;79166;79167;79168;79169;79170;79171;79172;79173;79174;79175;79176;79177;79178 79165 14 GDEGDFR Unmodified 794.3195 0.31949624 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.901 12.733 2 0.06449 3564 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.39 60.39 167480000 14523000 12253000 11290000 0 0 0 14591000 14807000 13265000 0 0 0 17518000 13075000 10092000 0 0 0 14942000 16069000 15057000 0 0 0 6929 111 6759 128731;128732;128733;128734;128735;128736;128737;128738;128739;128740;128741;128742 79179;79180;79181 79179 3 GDEPVTVEGK Unmodified 1029.4979 0.49785453 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.138 13.99 2 0.00047012 4285 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 100.98 76.829 1604300000 164180000 146430000 143830000 0 0 0 166720000 135350000 105000000 0 0 0 123150000 111080000 112610000 0 0 0 134230000 139180000 122560000 0 0 0 6930 1503 6760 128743;128744;128745;128746;128747;128748;128749;128750;128751;128752;128753;128754 79182;79183;79184;79185;79186;79187;79188;79189;79190 79185 9 GDESLVIK Unmodified 859.4651 0.46509784 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.543 20.033 2 0.061818 7420 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 57.281 30.485 385920000 38478000 32375000 26430000 0 0 0 34326000 51800000 35038000 0 0 0 30321000 27105000 22830000 0 0 0 28289000 31419000 27506000 0 0 0 6931 880 6761 128755;128756;128757;128758;128759;128760;128761;128762;128763;128764;128765;128766 79191;79192;79193;79194 79193 4 GDEVIELAK Unmodified 972.51278 0.51277632 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.251 24.194 2 0.001001 10337 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 95.741 62.303 1016500000 178820000 155900000 130160000 6626100 5488100 6512600 118160000 122680000 111740000 0 0 5317900 24476000 21377000 22400000 0 0 0 37612000 33842000 35438000 0 0 0 6932 147 6762 128767;128768;128769;128770;128771;128772;128773;128774;128775;128776;128777;128778;128779;128780;128781;128782 79195;79196;79197;79198;79199;79200;79201;79202;79203;79204 79203 10 GDEVLTNGGLVGR Unmodified 1285.6626 0.66262845 824 P0ADZ7 yajC UPF0092 membrane protein YajC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.748 26.559 2 7.2167E-09 12129 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.07 161.6 1064700000 49712000 38664000 37104000 15237000 14778000 16303000 86956000 78992000 82165000 54176000 32055000 31993000 56334000 45630000 46764000 6750900 4604100 4693200 93984000 89921000 100070000 21790000 29291000 26762000 6933 824 6763 128783;128784;128785;128786;128787;128788;128789;128790;128791;128792;128793;128794;128795;128796;128797;128798;128799;128800;128801;128802;128803;128804;128805;128806 79205;79206;79207;79208;79209;79210;79211;79212;79213;79214;79215;79216;79217;79218;79219;79220;79221;79222;79223;79224;79225;79226;79227;79228 79218 23 GDEWICDR Unmodified 1049.4236 0.42364373 1312 P27838 cyaY Protein CyaY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.131 22.402 2 0.00087898 9875 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.29 119.29 530330000 44305000 41134000 35839000 0 0 0 44639000 38158000 43326000 0 0 0 35503000 37928000 41342000 0 0 0 59105000 50662000 58393000 0 0 0 6934 1312 6764 128807;128808;128809;128810;128811;128812;128813;128814;128815;128816;128817;128818 79229;79230;79231;79232;79233;79234;79235;79236;79237;79238;79239;79240 79230 10 GDFDVIESR Unmodified 1036.4825 0.48253882 1589 P46859 gntK Thermoresistant gluconokinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.496 27.065 2 7.2536E-08 12632 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 188.98 183.5 917920000 0 8752900 7988800 0 404980 0 97256000 84357000 82585000 1570700 2184400 0 103260000 89794000 101150000 0 0 0 116780000 112330000 109510000 0 0 0 6935 1589 6765 128819;128820;128821;128822;128823;128824;128825;128826;128827;128828;128829;128830;128831;128832 79241;79242;79243;79244;79245;79246;79247;79248;79249 79243 9 GDFSYVGR Unmodified 899.41373 0.41373097 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.551 20.901 2 0.00011588 8190 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 157.99 152.45 10989000000 114330000 100590000 93184000 2210500 2473400 1671400 986080000 936150000 948780000 0 0 0 1081300000 892600000 873990000 0 0 0 1619800000 1673300000 1659600000 0 1695900 1449600 6936 993 6766 128833;128834;128835;128836;128837;128838;128839;128840;128841;128842;128843;128844;128845;128846;128847;128848;128849 79250;79251;79252;79253;79254;79255;79256;79257;79258;79259;79260;79261;79262;79263 79255 14 GDFVGFDIDLGNEMCK Unmodified 1815.7808 0.78077103 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.619 51.359 2 2.2436E-18 25273 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 188.29 188.29 368160000 112180000 122840000 100390000 0 0 0 3268900 2546900 2263500 0 0 0 3531000 2727000 3126600 0 0 0 6939100 4228400 4124800 0 0 0 6937 217 6767 128850;128851;128852;128853;128854;128855;128856;128857;128858;128859;128860;128861 79264;79265;79266 79264 3 GDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPR Unmodified 4316.0332 0.033180567 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 53.863 52.42 3;4 1.4185E-28 25643 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 156.17 155.04 618360000 41499000 37669000 31431000 0 0 0 79950000 67914000 59022000 0 0 0 29232000 31966000 65589000 0 0 0 62044000 55080000 56962000 0 0 0 6938 333 6768 128862;128863;128864;128865;128866;128867;128868;128869;128870;128871;128872;128873;128874;128875;128876;128877;128878;128879;128880;128881;128882;128883;128884 79267;79268;79269;79270;79271;79272;79273;79274;79275;79276 79272 9 GDGAILTATQNGYGK Unmodified 1464.7209 0.72087161 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.862 22.999 2 5.5656E-20 10245 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 204.5 200.45 220720000 18223000 14133000 13683000 1070600 1065500 863980 11625000 11418000 12717000 6379300 6297200 6785000 13818000 14362000 16117000 1570300 1234000 1310200 18345000 18893000 22106000 2578700 3041200 3087200 6939 882 6769 128885;128886;128887;128888;128889;128890;128891;128892;128893;128894;128895;128896;128897;128898;128899;128900;128901;128902;128903;128904;128905;128906;128907;128908 79277;79278;79279;79280;79281;79282;79283;79284;79285;79286;79287;79288;79289;79290;79291;79292 79281 14 GDGAILTATQNGYGKR Unmodified 1620.822 0.82198264 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 18.812 18.701 3 0.12998 5792 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 29.099 24.208 12352000 0 0 0 0 0 0 0 0 0 3735400 2703300 1638200 0 0 0 0 0 0 0 0 0 1420100 1263300 1592100 6940 882 6770 128909;128910;128911;128912;128913;128914 79293 79293 0 GDGCGHCAACNLR Unmodified 1446.5551 0.55508539 1939 P77756 queC 7-cyano-7-deazaguanine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 10.925 11.741 2;3 3.595E-09 2908 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 173.24 173.24 543640000 41224000 40791000 48966000 0 0 0 50101000 48120000 44089000 0 0 0 42863000 41638000 43542000 0 0 0 46979000 42288000 53038000 0 0 0 6941 1939 6771 128915;128916;128917;128918;128919;128920;128921;128922;128923;128924;128925;128926;128927;128928;128929;128930;128931;128932;128933;128934;128935;128936;128937;128938 79294;79295;79296;79297;79298;79299 79298 5 GDGEQVAGGETVANWDPHTMPVITEVSGFVR Oxidation (M) 3270.5252 0.52515528 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 8 7 7 9 8 7 7 5 49.818 48.872 3;4 1.3006E-32 19515 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 181.9 181.24 2189400000 0 0 0 0 0 0 0 0 0 123820000 172430000 142980000 0 0 0 445700000 310580000 338380000 0 0 0 245490000 197130000 212840000 6942 458 6772 128939;128940;128941;128942;128943;128944;128945;128946;128947;128948;128949;128950;128951;128952;128953;128954;128955;128956;128957;128958;128959;128960;128961;128962;128963;128964;128965;128966;128967;128968;128969;128970;128971;128972;128973;128974;128975;128976;128977;128978;128979;128980;128981;128982;128983;128984;128985;128986;128987;128988;128989;128990;128991;128992;128993;128994;128995;128996;128997;128998;128999;129000;129001;129002 79300;79301;79302;79303;79304;79305;79306;79307;79308;79309;79310;79311;79312;79313;79314;79315;79316;79317;79318;79319;79320;79321;79322;79323;79324;79325;79326;79327;79328;79329;79330;79331;79332;79333;79334;79335;79336;79337;79338;79339;79340;79341;79342;79343;79344;79345;79346;79347;79348;79349;79350;79351;79352 79331 228 53 GDGEQVAGGETVANWDPHTMPVITEVSGFVR Unmodified 3254.5302 0.53024066 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 3 3 2 2 2 2 4 3 5 2 2 2 2 4 3 52.83 51.773 3;4;5 6.5978E-82 25416 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 272.27 270.22 39516000000 243750000 269370000 219030000 23176000 20720000 20701000 137990000 158340000 127860000 2225600000 2968700000 2980900000 195560000 185450000 167540000 6492700000 6735100000 6544100000 241900000 244820000 263110000 3050200000 2872700000 3126400000 6943 458 6772 129003;129004;129005;129006;129007;129008;129009;129010;129011;129012;129013;129014;129015;129016;129017;129018;129019;129020;129021;129022;129023;129024;129025;129026;129027;129028;129029;129030;129031;129032;129033;129034;129035;129036;129037;129038;129039;129040;129041;129042;129043;129044;129045;129046;129047;129048;129049;129050;129051;129052;129053;129054;129055;129056;129057;129058;129059;129060 79353;79354;79355;79356;79357;79358;79359;79360;79361;79362;79363;79364;79365;79366;79367;79368;79369;79370;79371;79372;79373;79374;79375;79376;79377;79378;79379;79380;79381;79382;79383;79384;79385;79386;79387;79388;79389;79390;79391;79392;79393;79394;79395;79396;79397;79398;79399;79400;79401;79402;79403;79404;79405;79406;79407;79408;79409;79410;79411;79412;79413 79381 61 GDGFDLNDFLEQLR Unmodified 1637.7686 0.76855009 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.332 54.023 2 6.6079E-25 21841 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 193.96 183.16 188350000 0 0 0 5000100 3386300 6562800 0 0 0 30814000 0 27329000 12698000 11741000 0 3011900 0 0 23346000 0 24150000 12421000 13232000 14655000 6944 1009 6773 129061;129062;129063;129064;129065;129066;129067;129068;129069;129070;129071;129072;129073;129074 79414;79415;79416;79417;79418;79419;79420;79421;79422 79415 9 GDGTTGEDITSNVR Unmodified 1420.643 0.64301522 1102 P15042 ligA DNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.23 17.799 2 2.0743E-15 6122 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 201.56 197.26 323060000 21209000 22545000 18199000 0 487850 0 22453000 28184000 29859000 0 0 0 25569000 22168000 22979000 5968300 5130100 4620500 32704000 28831000 32153000 0 0 0 6945 1102 6774 129075;129076;129077;129078;129079;129080;129081;129082;129083;129084;129085;129086;129087;129088;129089;129090 79423;79424;79425;79426;79427;79428;79429;79430;79431;79432;79433;79434;79435;79436;79437 79437 15 GDHELNEVK Unmodified 1039.4934 0.49343786 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.005 11.821 2 4.6899E-05 2765 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 149.82 136.83 1843700000 157980000 170720000 156580000 0 0 0 142610000 134730000 136700000 0 0 0 160990000 147810000 147310000 0 0 0 182230000 162460000 143570000 0 0 0 6946 1120 6775 129091;129092;129093;129094;129095;129096;129097;129098;129099;129100;129101;129102 79438;79439;79440;79441;79442;79443;79444;79445;79446;79447;79448;79449 79448 9 GDHEPDMTYVESAAR Unmodified 1676.71 0.71004893 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 23.423 22.677 3 3.8138E-06 9413 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 96.135 96.135 96642000 5640300 6071700 0 0 0 0 8174500 7205400 6575700 0 0 0 9466600 12064000 7961900 0 0 0 13016000 9873300 10593000 0 0 0 6947 1307 6776 129103;129104;129105;129106;129107;129108;129109;129110;129111;129112;129113 79450;79451;79452;79453;79454;79455 79454 6 GDHNQLISSIK Unmodified 1210.6306 0.63060004 1783 P75849 ycbL Uncharacterized protein YcbL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 1 1 1 1 1 1 16.884 17.614 2;3 3.1836E-14 6366 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 227.94 166.26 653150000 53249000 109360000 94617000 0 0 0 50065000 79170000 82833000 0 0 0 24458000 19657000 24191000 0 0 0 45455000 34518000 35575000 0 0 0 6948 1783 6777 129114;129115;129116;129117;129118;129119;129120;129121;129122;129123;129124;129125;129126;129127;129128;129129 79456;79457;79458;79459;79460;79461;79462;79463;79464;79465;79466;79467;79468;79469;79470 79459 14 GDHTTFVKPNIPATGEFK Unmodified 1957.9898 0.98977625 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 2 2 2 2 1 1 2 1 2 2 2 2 26.249 25.09 3;4 6.0915E-14 11597 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 144.97 143.17 1718800000 10685000 6619700 12310000 0 0 0 79854000 81078000 86448000 52801000 40537000 42539000 219680000 186670000 216490000 8936400 6138700 5363900 242990000 90149000 238910000 24192000 32567000 33873000 6949 723 6778 129130;129131;129132;129133;129134;129135;129136;129137;129138;129139;129140;129141;129142;129143;129144;129145;129146;129147;129148;129149;129150;129151;129152;129153;129154;129155;129156;129157;129158;129159;129160;129161;129162;129163;129164 79471;79472;79473;79474;79475;79476;79477;79478;79479;79480;79481;79482;79483;79484;79485;79486;79487;79488;79489;79490;79491 79479 20 GDIAILADSGIR Unmodified 1199.651 0.65100113 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 38.712 36.886 2 0.0010039 14564 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 77.379 71.075 36536000 0 3587500 0 3075700 2592300 2167100 0 0 0 4455200 4624000 5372600 0 0 0 0 0 1273900 0 0 0 4577600 0 4809600 6950 1417 6779 129165;129166;129167;129168;129169;129170;129171;129172;129173;129174 79492;79493;79494;79495;79496;79497;79498 79494 5 GDIDANAFQHKPYLDQQLK Unmodified 2200.0913 0.091281208 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 27.498 26.285 3;4 9.454E-10 12347 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 112.26 107.82 1212900000 132200000 138380000 130770000 18113000 18285000 12740000 91614000 91066000 97268000 52466000 25548000 31075000 37426000 36180000 35458000 8342600 4266300 3061900 80904000 84025000 78826000 4915800 0 0 6951 1321 6780 129175;129176;129177;129178;129179;129180;129181;129182;129183;129184;129185;129186;129187;129188;129189;129190;129191;129192;129193;129194;129195;129196;129197;129198;129199;129200;129201;129202;129203;129204;129205;129206;129207;129208;129209;129210;129211;129212;129213;129214;129215 79499;79500;79501;79502;79503;79504;79505;79506;79507;79508;79509;79510;79511;79512;79513;79514;79515;79516;79517;79518;79519 79502 21 GDIDANAFQHKPYLDQQLKDR Unmodified 2471.2193 0.21933527 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 24.471 23.542 4 0.063357 7636 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 34.689 31.591 21725000 0 0 0 3929100 4279200 3351400 0 0 0 0 8165300 0 0 0 0 0 2000100 0 0 0 0 0 0 0 6952 1321 6781 129216;129217;129218;129219;129220 79520;79521;79522;79523 79522 4 GDIDLEPFVTHTMSLDEINDAFDLMHEGK Unmodified 3288.4955 0.49549463 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.612 53.164 4 3.1263E-11 25159 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 121.97 121.97 929360000 116670000 100370000 91149000 0 0 0 71626000 49788000 61706000 0 0 0 70041000 67246000 77605000 0 0 0 80605000 70398000 72147000 0 0 0 6953 1253 6782 129221;129222;129223;129224;129225;129226;129227;129228;129229;129230;129231;129232 79524;79525;79526;79527;79528;79529;79530;79531;79532;79533;79534 79533 11 GDIGNYLGLTVETISR Unmodified 1706.8839 0.88391419 513 P0A9E5 fnr Fumarate and nitrate reduction regulatory protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 51.681 50.642 2 2.9679E-06 20243 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 97.551 82.675 77978000 5019000 0 4495000 3273000 2584000 2662300 0 0 0 6275700 6954700 7036300 0 0 0 10340000 10924000 11142000 0 0 0 3578800 0 3692700 6954 513 6783 129233;129234;129235;129236;129237;129238;129239;129240;129241;129242;129243;129244;129245 79535;79536;79537;79538;79539;79540;79541;79542 79538 7 GDIIIDGGNTFFQDTIR Unmodified 1880.9268 0.92684164 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 4 4 3 4 4 4 3 3 51.325 50.078 2;3 3.2688E-25 24619 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 262 254.83 5999300000 358270000 344440000 308480000 0 0 0 522640000 553210000 500500000 0 0 0 540800000 525960000 537270000 0 0 0 637340000 581020000 589400000 0 0 0 6955 24 6784 129246;129247;129248;129249;129250;129251;129252;129253;129254;129255;129256;129257;129258;129259;129260;129261;129262;129263;129264;129265;129266;129267;129268;129269;129270;129271;129272;129273;129274;129275;129276;129277;129278;129279;129280;129281;129282;129283;129284 79543;79544;79545;79546;79547;79548;79549;79550;79551;79552;79553;79554;79555;79556;79557;79558;79559;79560;79561;79562;79563;79564;79565;79566 79555 24 GDISEFAPR Unmodified 990.47706 0.47705951 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.425 24.219 2 5.961E-05 10946 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.54 139.31 1907300000 117030000 113230000 111020000 10869000 11817000 14971000 176130000 180460000 168670000 15091000 9166200 3913000 169600000 0 155150000 0 0 0 216650000 218250000 203130000 0 7029200 5134100 6956 107 6785 129285;129286;129287;129288;129289;129290;129291;129292;129293;129294;129295;129296;129297;129298;129299;129300;129301;129302;129303;129304 79567;79568;79569;79570;79571;79572;79573;79574;79575;79576;79577;79578;79579;79580;79581;79582;79583;79584;79585 79572 19 GDIVLCGFEYGR Unmodified 1384.6445 0.64453555 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.543 39.924 2 3.3789E-08 14975 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 162.64 152.86 1257900000 173270000 169030000 143880000 7694600 5491100 6107600 56904000 54572000 53085000 22051000 23020000 20404000 91451000 83321000 73614000 19600000 17100000 14805000 59286000 74371000 68097000 7276800 6387400 7091300 6957 297 6786 129305;129306;129307;129308;129309;129310;129311;129312;129313;129314;129315;129316;129317;129318;129319;129320;129321;129322;129323;129324;129325;129326;129327;129328 79586;79587;79588;79589;79590;79591;79592;79593;79594;79595;79596;79597;79598;79599;79600;79601;79602;79603;79604 79586 17 GDKDIFTVHDILK Unmodified 1499.7984 0.79839365 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 3 2 1 1 1 3 3 3 3 3 3 32.668 31.245 2;3;4 1.3384E-06 14650 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.36 136.88 1109600000 257920000 245320000 208430000 4230400 4324800 5026200 48618000 40631000 39682000 2925500 2557100 3641000 31651000 31116000 30536000 0 0 0 50252000 47287000 55410000 0 0 0 6958 405 6787 129329;129330;129331;129332;129333;129334;129335;129336;129337;129338;129339;129340;129341;129342;129343;129344;129345;129346;129347;129348;129349;129350;129351;129352;129353;129354;129355;129356;129357;129358;129359;129360;129361;129362;129363;129364;129365;129366;129367;129368;129369;129370;129371 79605;79606;79607;79608;79609;79610;79611;79612;79613;79614;79615;79616;79617 79614 13 GDKDPFALR Unmodified 1017.5243 0.52434406 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.552 20.802 2 0.00036499 8196 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.58 112.54 922940000 105350000 100980000 84544000 666720 0 458660 81192000 68070000 73588000 0 1604600 1510700 53833000 50793000 50966000 0 0 0 77925000 81044000 88955000 573720 890800 0 6959 62 6788 129372;129373;129374;129375;129376;129377;129378;129379;129380;129381;129382;129383;129384;129385;129386;129387;129388;129389 79618;79619;79620;79621;79622;79623;79624 79620 7 GDLESVLDLTGK Unmodified 1245.6452 0.64524705 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 1 1 1 45.63 44.221 2;3 7.4947E-07 21806 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 152.97 138.11 3591200000 356450000 337130000 276050000 0 0 0 226840000 208160000 200650000 0 0 0 350810000 317130000 299850000 0 0 0 349530000 347040000 321530000 0 0 0 6960 161 6789 129390;129391;129392;129393;129394;129395;129396;129397;129398;129399;129400;129401;129402;129403 79625;79626;79627;79628;79629;79630;79631;79632;79633;79634;79635;79636;79637 79626 13 GDLGLVIACLPYA Unmodified 1360.7061 0.70607317 362 P0A7Q1 rpmI 50S ribosomal protein L35 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 55.901 54.704 2 3.1049E-05 21078 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 103.87 101.45 909220000 24419000 121370000 185930000 0 10466000 0 6072500 4432000 0 0 0 0 0 0 126810000 45210000 47920000 44895000 42024000 112400000 68607000 22120000 23281000 23263000 6961 362 6790 129404;129405;129406;129407;129408;129409;129410;129411;129412;129413;129414;129415;129416;129417;129418;129419;129420 79638;79639;79640;79641;79642;79643;79644 79639 3 GDLGVEIGDPELVGIQK Unmodified 1737.9149 0.91487997 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 1 2 2 2 2 2 2 46.127 44.563 2;3 7.6207E-14 21704 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 164.48 154.53 5168000000 301130000 291990000 279230000 6767600 6435100 5832100 564300000 508350000 505140000 0 10000000 920410 532630000 502410000 472670000 0 0 0 377600000 424710000 377900000 0 0 0 6962 1184 6791 129421;129422;129423;129424;129425;129426;129427;129428;129429;129430;129431;129432;129433;129434;129435;129436;129437;129438;129439;129440;129441;129442;129443;129444;129445;129446;129447;129448;129449;129450 79645;79646;79647;79648;79649;79650;79651;79652;79653;79654;79655;79656;79657;79658;79659;79660;79661;79662;79663;79664;79665;79666;79667;79668 79653 23 GDLGVEIPVEEVIFAQK Unmodified 1841.9775 0.97748023 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 1 2 1 54.673 53.216 2;3 1.2186E-08 26123 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.36 136.55 5407200000 457110000 432940000 354830000 0 0 0 472790000 538270000 476620000 0 0 0 461730000 453300000 409930000 0 0 0 472620000 499870000 377230000 0 0 0 6963 771 6792 129451;129452;129453;129454;129455;129456;129457;129458;129459;129460;129461;129462;129463;129464;129465;129466;129467;129468;129469;129470;129471 79669;79670;79671;79672;79673;79674;79675;79676 79671 8 GDLGVVWER Unmodified 1029.5243 0.52434406 1480 P37645 yhjG Uncharacterized protein YhjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 34.01 32.351 2 0.013044 15460 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.825 64.077 30847000 4649000 4681600 3404500 0 0 0 5698200 4553200 4737300 1717100 0 0 0 0 1406100 0 0 0 0 0 0 0 0 0 6964 1480 6793 129472;129473;129474;129475;129476;129477;129478;129479 79677;79678;79679;79680;79681 79679 0 GDLLEGISR Unmodified 958.50836 0.50835964 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.806 29.449 2 7.9621E-05 13980 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.39 110.65 410600000 24424000 18902000 15580000 0 0 0 35267000 33216000 35396000 0 0 0 37429000 38038000 37296000 0 0 0 39191000 48287000 47577000 0 0 0 6965 509 6794 129480;129481;129482;129483;129484;129485;129486;129487;129488;129489;129490;129491 79682;79683;79684;79685;79686;79687;79688;79689 79684 8 GDLVLFDR Unmodified 933.49198 0.4919813 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 37.226 35.578 2 0.0029454 17222 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.253 83.992 96532000 6452500 8571300 0 0 0 0 8325200 0 8613900 0 0 0 8312400 8876700 10059000 0 0 0 14047000 11822000 11452000 0 0 0 6966 1171 6795 129492;129493;129494;129495;129496;129497;129498;129499;129500;129501;129502 79690;79691;79692;79693;79694;79695;79696;79697 79691 8 GDLVSKPYIDITLNLMK Unmodified 1919.0438 0.043785655 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 50.286 48.907 3 9.5497E-05 23944 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.532 71.96 103690000 9630800 8898400 9216400 0 0 0 0 8788400 7916200 0 0 0 7849300 8010900 7216000 0 0 0 11922000 10781000 13462000 0 0 0 6967 232 6796 129503;129504;129505;129506;129507;129508;129509;129510;129511;129512;129513 79698;79699 79698 2 GDLYIDDHHTVEDTGLALGEALK Unmodified 2481.2023 0.2023478 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 42.155 40.272 3;4 1.2374E-06 19654 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.11 94.948 499140000 51482000 55103000 55049000 4862100 4003900 4458000 42874000 32707000 31121000 7144100 7000700 6569900 32146000 27482000 24062000 0 0 0 32320000 37870000 32772000 3338700 3588600 3185400 6968 139 6797 129514;129515;129516;129517;129518;129519;129520;129521;129522;129523;129524;129525;129526;129527;129528;129529;129530;129531;129532;129533;129534;129535;129536;129537;129538;129539;129540;129541;129542;129543;129544;129545;129546;129547;129548;129549;129550;129551;129552;129553;129554;129555 79700;79701 79700 2 GDMGDVQHFADDVIAQR Unmodified 1872.8425 0.84246009 296 P0A6Z6 nikR Nickel-responsive regulator yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 40.602 38.486 3 0.067012 15030 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 33.872 33.183 59875000 0 0 0 3902700 5353900 4801600 0 0 4180800 10405000 6431800 5318900 0 0 0 0 0 0 0 0 0 6021000 4011300 9448000 6969 296 6798 129556;129557;129558;129559;129560;129561;129562;129563;129564;129565 79702 79702 1 GDMLLDGFR Unmodified 1022.4855 0.48551571 1553 P42588 patA Putrescine aminotransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.582 38.872 2 0.12841 18924 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 40.002 32.33 35360000 3516100 3688200 3234900 0 0 0 6439300 5841100 6603800 0 0 0 1441800 0 0 0 0 0 0 2222900 2372100 0 0 0 6970 1553 6799 129566;129567;129568;129569;129570;129571;129572;129573;129574 79703 79703 1 GDMLSMEDVLEILR Unmodified 1619.7899 0.78987915 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.75 54.486 2 1.7833E-19 25797 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 207.29 203.27 1896400000 174120000 142940000 151060000 61471000 54999000 50530000 78917000 63737000 81404000 34750000 43551000 37445000 135490000 122490000 121930000 7534300 11679000 12373000 122010000 118910000 135850000 47524000 45752000 39906000 6971 899 6800 129575;129576;129577;129578;129579;129580;129581;129582;129583;129584;129585;129586;129587;129588;129589;129590;129591;129592;129593;129594;129595;129596;129597;129598;129599 79704;79705;79706;79707;79708;79709;79710;79711;79712;79713;79714;79715;79716;79717;79718;79719;79720;79721;79722;79723;79724;79725;79726;79727 79726 24 GDNEENRR Unmodified 988.43223 0.43223458 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 4.2015 5.0897 2 0.0044998 762 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 90.862 82.858 61193000 0 0 0 0 0 0 0 0 0 0 0 0 11586000 8650500 8219400 0 0 0 10520000 10659000 11559000 0 0 0 6972 509 6801 129600;129601;129602;129603;129604;129605 79728;79729;79730;79731;79732 79732 5 GDNFLLIR Unmodified 946.52362 0.52361577 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.283 36.424 2 0.00075967 16983 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 124.34 104.87 1708800000 207460000 165310000 151060000 792250 716240 653330 114790000 112020000 129070000 869700 1218700 1130400 104280000 90572000 107620000 0 0 0 174880000 173120000 168260000 1911400 1976700 1119100 6973 1143 6802 129606;129607;129608;129609;129610;129611;129612;129613;129614;129615;129616;129617;129618;129619;129620;129621;129622;129623;129624;129625;129626 79733;79734;79735;79736;79737;79738;79739;79740;79741;79742;79743;79744 79742 12 GDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAR Unmodified 4141.05 0.050016605 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 54.734 54.79 4 1.6659E-22 20679 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 139.85 135.58 60613000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15117000 19258000 26238000 0 0 0 0 0 0 6974 1616 6803 129627;129628;129629 79745 79745 1 GDPHVLLTTSAGNIELELDK Unmodified 2121.0954 0.095363533 952 P0AFL3 ppiA Peptidyl-prolyl cis-trans isomerase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.786 42.256 3 1.8332E-08 19935 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 111.65 108.26 277040000 21004000 20819000 12531000 0 0 0 29097000 32596000 28707000 0 0 0 21016000 0 21463000 0 0 0 30853000 32028000 26923000 0 0 0 6975 952 6804 129630;129631;129632;129633;129634;129635;129636;129637;129638;129639;129640 79746;79747;79748;79749;79750;79751;79752;79753;79754;79755;79756 79755 11 GDPVITIAPLSWK Unmodified 1395.7762 0.77620165 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 2 2 2 1 2 2 1 1 1 1 2 2 1 1 1 50.448 49.176 2;3 9.6596E-07 19982 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 146.71 145.12 1292700000 19939000 17687000 19025000 10955000 9319200 9090900 109880000 115020000 107500000 141810000 114900000 116950000 58929000 51249000 59728000 9101300 8119600 9570500 77879000 86527000 78959000 19134000 23106000 18285000 6976 1944 6805 129641;129642;129643;129644;129645;129646;129647;129648;129649;129650;129651;129652;129653;129654;129655;129656;129657;129658;129659;129660;129661;129662;129663;129664;129665;129666;129667;129668;129669;129670;129671;129672;129673 79757;79758;79759;79760;79761;79762;79763;79764;79765;79766;79767;79768;79769;79770;79771;79772;79773;79774 79759 18 GDQAEETILR Unmodified 1130.5568 0.5567664 1605 P52108 rstA Transcriptional regulatory protein RstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 4 3 4 4 4 3 3 3 2 2 2 1 3 3 3 3 2 2 28.262 27.503 2 3.0023E-06 8223 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.2 134.46 2152200000 171800000 124880000 115740000 0 0 0 199240000 184680000 178720000 33677000 21795000 27694000 137730000 126300000 117560000 0 8062100 0 191160000 216040000 208380000 32612000 26721000 29413000 6977 1605 6806 129674;129675;129676;129677;129678;129679;129680;129681;129682;129683;129684;129685;129686;129687;129688;129689;129690;129691;129692;129693;129694;129695;129696;129697;129698;129699;129700;129701;129702;129703;129704;129705;129706;129707;129708;129709;129710;129711;129712;129713;129714;129715;129716;129717;129718;129719;129720;129721;129722;129723;129724;129725;129726;129727;129728 79775;79776;79777;79778;79779;79780;79781;79782;79783;79784;79785;79786;79787;79788;79789;79790;79791;79792 79786 17 GDQDMILLLSK Unmodified 1231.6482 0.64822394 513 P0A9E5 fnr Fumarate and nitrate reduction regulatory protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.241 43.729 2 0.0063864 17414 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 65.056 54.346 412180000 54382000 49100000 52943000 1013200 944350 1556000 0 39336000 0 4987000 8180100 4519500 0 26673000 26420000 5891400 0 0 49103000 36691000 44833000 0 2710800 2898100 6978 513 6807 129729;129730;129731;129732;129733;129734;129735;129736;129737;129738;129739;129740;129741;129742;129743;129744;129745;129746 79793;79794;79795;79796;79797;79798;79799;79800 79796 6 GDQIRDWLYVEDHAR Unmodified 1871.8915 0.89145919 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 33.277 31.73 4 0.039183 15027 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 39.143 35.24 102170000 0 4316100 0 632050 0 0 10600000 11424000 10059000 0 0 0 0 8938100 0 0 0 0 17558000 18749000 19897000 0 0 0 6979 1496 6808 129747;129748;129749;129750;129751;129752;129753;129754;129755 79801;79802;79803;79804 79802 4 GDQYPIALEGALK Unmodified 1373.7191 0.7190807 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.925 38.061 2 5.9759E-05 18782 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 89.548 79.024 3087400000 222580000 192930000 215480000 1498200 1627700 1695100 284310000 256610000 267910000 2278400 2281600 2283800 235270000 207230000 237960000 0 0 0 327670000 317690000 306070000 1089500 1788700 1098700 6980 1137 6809 129756;129757;129758;129759;129760;129761;129762;129763;129764;129765;129766;129767;129768;129769;129770;129771;129772;129773;129774;129775;129776 79805;79806;79807;79808;79809;79810;79811;79812;79813;79814;79815 79807 9 GDRVEGK Unmodified 759.38752 0.38751622 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.6724 7.2419 2 0.010856 859 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.111 59.136 346920000 0 0 0 2211500 2136900 1864100 0 77046 0 11680000 9213900 12147000 34056000 31146000 35801000 15528000 4279200 5239300 60589000 55069000 52805000 7330900 5747700 0 6981 990 6810 129777;129778;129779;129780;129781;129782;129783;129784;129785;129786;129787;129788;129789;129790;129791;129792;129793;129794 79816;79817;79818;79819;79820;79821;79822;79823;79824;79825;79826;79827;79828;79829;79830;79831 79824 16 GDSAFYTWLYR Unmodified 1377.6354 0.63535107 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 47.603 47.658 2;3 6.278E-08 18231 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 201.58 185.92 285730000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 107290000 79201000 99239000 0 0 0 0 0 0 6982 1005 6811 129795;129796;129797;129798;129799;129800 79832;79833;79834;79835;79836 79832 5 GDSLDACAELGR Unmodified 1262.5561 0.55611447 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.4 23.503 2 7.0723E-12 9809 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 192.26 189.01 1075200000 46802000 40333000 34130000 0 0 0 147740000 142210000 142110000 0 0 0 102750000 84531000 102250000 0 0 0 81085000 75523000 75741000 0 0 0 6983 1806 6812 129801;129802;129803;129804;129805;129806;129807;129808;129809;129810;129811;129812 79837;79838;79839;79840;79841;79842;79843;79844;79845;79846;79847;79848;79849;79850;79851;79852;79853;79854 79853 18 GDSNNLADK Unmodified 932.41994 0.41993856 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 10.089 10.896 2 0.00084528 2419 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 99.755 62.661 805860000 67617000 69959000 56493000 0 0 0 20272000 20202000 20017000 0 0 0 80764000 76380000 79957000 0 0 0 123150000 103680000 87377000 0 0 0 6984 59 6813 129813;129814;129815;129816;129817;129818;129819;129820;129821;129822;129823;129824;129825 79855;79856;79857;79858;79859;79860;79861;79862;79863;79864;79865;79866;79867 79865 13 GDSRPVNPLEQR Unmodified 1366.6953 0.69532556 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 15.538 16.261 2;3 2.2299E-05 5611 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.87 114.28 395160000 26260000 22297000 24190000 0 0 689290 32336000 34463000 35432000 1465700 1469300 1910600 34866000 29069000 34378000 0 0 0 39672000 36721000 39943000 0 0 0 6985 1880 6814 129826;129827;129828;129829;129830;129831;129832;129833;129834;129835;129836;129837;129838;129839;129840;129841;129842;129843;129844;129845;129846;129847;129848;129849;129850;129851;129852;129853 79868;79869;79870;79871;79872;79873;79874;79875;79876;79877;79878;79879;79880;79881;79882;79883;79884;79885;79886;79887;79888 79880 21 GDSVFSPDDR Unmodified 1093.4676 0.46761704 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.503 20.883 2 0.00021249 7875 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 120.12 116.18 448230000 65839000 65977000 54251000 5530900 5819300 6062400 34336000 38251000 33181000 0 0 0 20581000 19511000 18761000 0 1476600 0 26234000 24355000 28063000 0 0 0 6986 235 6815 129854;129855;129856;129857;129858;129859;129860;129861;129862;129863;129864;129865;129866;129867;129868;129869 79889;79890;79891;79892;79893;79894;79895;79896;79897;79898;79899;79900;79901;79902;79903 79902 15 GDSVSFDEYWK Unmodified 1331.567 0.56699673 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.388 37.714 2 3.9295E-05 18722 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.44 131.44 501020000 36941000 37222000 36115000 0 0 0 38300000 39211000 40579000 0 0 0 38382000 37996000 35732000 0 0 0 51996000 55257000 53290000 0 0 0 6987 60 6816 129870;129871;129872;129873;129874;129875;129876;129877;129878;129879;129880;129881 79904;79905;79906;79907;79908;79909;79910;79911;79912;79913;79914;79915 79904 12 GDTAGTGGK Unmodified 762.3508 0.35079637 265 P0A6N4 efp Elongation factor P yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 4.2393 5.2131 2 0.00099453 758 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 95.909 77.104 45780000 0 0 0 0 0 0 0 0 0 0 0 0 17923000 14719000 13138000 0 0 0 0 0 0 0 0 0 6988 265 6817 129882;129883;129884 79916;79917;79918 79916 3 GDTAGTGGKPATLSTGAVVK Unmodified 1786.9425 0.94249171 265 P0A6N4 efp Elongation factor P yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 3 2 2 2 2 3 15.95 16.769 2;3 4.5987E-37 5759 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 276.12 228.13 4816300000 310960000 367650000 328110000 0 0 0 418660000 451090000 471890000 0 0 0 418390000 374280000 363100000 0 0 0 473580000 407550000 431010000 0 0 0 6989 265 6818 129885;129886;129887;129888;129889;129890;129891;129892;129893;129894;129895;129896;129897;129898;129899;129900;129901;129902;129903;129904;129905;129906;129907;129908;129909;129910;129911 79919;79920;79921;79922;79923;79924;79925;79926;79927;79928;79929;79930;79931;79932;79933;79934;79935;79936;79937;79938;79939;79940;79941;79942;79943 79935 25 GDTEELTVR Unmodified 1018.4931 0.49310351 1339 P30136 thiC Phosphomethylpyrimidine synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 16.242 17.04 2 0.056628 5981 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 57.59 47.516 37605000 0 0 0 0 0 0 5871300 5312800 5206500 0 0 0 0 0 2271400 0 0 0 6324600 6780600 5837300 0 0 0 6990 1339 6819 129912;129913;129914;129915;129916;129917;129918 79944 79944 0 GDTLVQANLAK Unmodified 1128.6139 0.61388734 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 22.147 22.078 2 0.10997 8602 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 41.448 37.609 85536000 18634000 14097000 15523000 0 266980 0 3765000 5661700 4698000 0 0 0 9440100 7247800 6201900 0 0 0 0 0 0 0 0 0 6991 1155 6820 129919;129920;129921;129922;129923;129924;129925;129926;129927;129928 79945 79945 0 GDVAALNVDALTENQK Unmodified 1656.8319 0.83187862 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.458 34.867 2 1.1963E-06 16137 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 133.32 124 1472300000 144510000 148350000 138570000 1284900 1528900 1254900 0 0 0 0 2223200 0 161080000 142100000 135690000 0 0 0 199920000 185870000 207090000 2819700 0 0 6992 170 6821 129929;129930;129931;129932;129933;129934;129935;129936;129937;129938;129939;129940;129941;129942 79946;79947;79948 79948 3 GDVASRR Unmodified 759.39875 0.39874961 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 9.6377 9.5928 1 0.1198 1691 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 33.738 9.7661 6737400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 937970 2696300 3103000 0 0 0 0 0 0 6993 1089 6822 129943;129944;129945 79949 79949 1 GDVAVFFGLSGTGK Unmodified 1353.6929 0.69286595 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 2 2 1 1 1 47.654 46.278 2 2.313E-07 22409 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.2 120.84 369960000 58377000 53109000 40669000 0 0 0 27910000 25245000 28250000 0 0 0 17273000 20089000 19282000 0 0 0 24304000 29098000 26349000 0 0 0 6994 1195 6823 129946;129947;129948;129949;129950;129951;129952;129953;129954;129955;129956;129957;129958;129959;129960;129961;129962;129963;129964 79950;79951;79952;79953;79954;79955;79956;79957;79958;79959;79960;79961;79962;79963 79960 7 GDVDELIAQNAHR Unmodified 1436.7008 0.70080487 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 1 2 1 1 2 2 2 24.962 24.044 2;3 7.2911E-18 10693 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 220.39 209.59 325490000 37182000 43660000 33905000 0 0 0 33884000 35425000 37981000 0 0 0 14866000 11783000 12955000 940920 0 416380 17176000 20385000 24934000 0 0 0 6995 1100 6824 129965;129966;129967;129968;129969;129970;129971;129972;129973;129974;129975;129976;129977;129978;129979;129980;129981;129982;129983;129984;129985;129986;129987;129988;129989 79964;79965;79966;79967;79968;79969;79970 79966 5 GDVFATAR Unmodified 835.41882 0.41881635 307 P0A738 moaC Cyclic pyranopterin monophosphate synthase accessory protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.875 17.608 2 0.10695 6371 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 47.749 28.186 175510000 24946000 27644000 22248000 0 0 0 22432000 18669000 19175000 0 0 0 10368000 7317400 7057000 0 0 0 15652000 0 0 0 0 0 6996 307 6825 129990;129991;129992;129993;129994;129995;129996;129997;129998;129999 79971;79972 79971 2 GDVHYVQIGAR Unmodified 1213.6204 0.62036971 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 16.902 17.677 2 0.00038593 6401 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 85.676 73.088 133940000 30902000 0 0 0 0 0 0 0 25757000 0 0 0 27230000 0 25972000 0 0 0 24083000 0 0 0 0 0 6997 563 6826 130000;130001;130002;130003;130004;130005;130006 79973;79974;79975;79976 79973 4 GDVILDTPLAK Unmodified 1140.639 0.63903946 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.848 33.4 2 0.00028469 16158 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.649 84.232 466240000 57184000 52677000 50546000 0 0 0 32813000 30709000 31442000 0 0 0 30359000 30988000 27514000 0 0 0 40818000 41045000 40141000 0 0 0 6998 137 6827 130007;130008;130009;130010;130011;130012;130013;130014;130015;130016;130017;130018 79977;79978;79979;79980;79981 79979 4 GDVISDGPEAPHDILR Unmodified 1689.8322 0.83221298 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 3 2 4 3 4 2 2 2 5 5 4 3 2 2 4 4 3 29.634 28.367 2;3;4 9.5317E-19 13028 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 213.73 190.01 52338000000 684520000 607910000 570740000 29742000 26207000 27028000 569450000 539200000 516180000 3242400000 3092300000 2913400000 527430000 474610000 441590000 8570200000 6930100000 7524700000 724840000 702980000 771200000 4191300000 4259200000 4400400000 6999 458 6828 130019;130020;130021;130022;130023;130024;130025;130026;130027;130028;130029;130030;130031;130032;130033;130034;130035;130036;130037;130038;130039;130040;130041;130042;130043;130044;130045;130046;130047;130048;130049;130050;130051;130052;130053;130054;130055;130056;130057;130058;130059;130060;130061;130062;130063;130064;130065;130066;130067;130068;130069;130070;130071;130072;130073;130074;130075;130076;130077;130078;130079;130080;130081;130082;130083;130084;130085;130086;130087 79982;79983;79984;79985;79986;79987;79988;79989;79990;79991;79992;79993;79994;79995;79996;79997;79998;79999;80000;80001;80002;80003;80004;80005;80006;80007;80008;80009;80010;80011;80012;80013;80014;80015;80016;80017;80018;80019;80020;80021;80022;80023;80024;80025;80026;80027;80028;80029;80030;80031;80032;80033;80034;80035;80036;80037;80038;80039;80040;80041;80042;80043;80044 80026 62 GDVLADGPSTDLGELALGQNMR Oxidation (M) 2244.0692 0.069225137 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 4 4 5 1 7 7 6 2 1 1 5 4 5 47.426 46.257 2;3 1.2402E-34 18595 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 214.32 209.85 1855200000 2457000 2295000 3428600 0 0 1029000 0 0 3392200 151750000 144870000 120990000 2812400 0 0 432970000 277310000 298970000 5361100 2925700 4927300 126430000 142460000 130840000 7000 463 6829 130088;130089;130090;130091;130092;130093;130094;130095;130096;130097;130098;130099;130100;130101;130102;130103;130104;130105;130106;130107;130108;130109;130110;130111;130112;130113;130114;130115;130116;130117;130118;130119;130120;130121;130122;130123;130124;130125;130126;130127;130128;130129;130130;130131;130132;130133;130134;130135;130136;130137;130138;130139;130140;130141;130142;130143;130144 80045;80046;80047;80048;80049;80050;80051;80052;80053;80054;80055;80056;80057;80058;80059;80060;80061;80062;80063;80064;80065;80066;80067;80068;80069;80070;80071;80072;80073;80074;80075;80076;80077;80078;80079;80080;80081;80082;80083;80084;80085;80086;80087;80088;80089;80090;80091 80070 263 47 GDVLADGPSTDLGELALGQNMR Unmodified 2228.0743 0.074310515 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 1 1 1 5 3 3 2 2 2 2 3 2 2 2 2 4 3 4 50.395 49.166 2;3 2.4882E-118 19067 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 380.61 373.24 34091000000 228030000 175140000 128860000 15655000 17277000 19246000 100010000 99055000 81808000 2315400000 2527600000 2296000000 210080000 211020000 227790000 4016300000 4979400000 5797900000 304380000 276220000 279030000 3060100000 3317800000 3407300000 7001 463 6829 130145;130146;130147;130148;130149;130150;130151;130152;130153;130154;130155;130156;130157;130158;130159;130160;130161;130162;130163;130164;130165;130166;130167;130168;130169;130170;130171;130172;130173;130174;130175;130176;130177;130178;130179;130180;130181;130182;130183;130184;130185;130186;130187;130188;130189;130190;130191;130192;130193;130194;130195;130196;130197;130198;130199;130200;130201;130202 80092;80093;80094;80095;80096;80097;80098;80099;80100;80101;80102;80103;80104;80105;80106;80107;80108;80109;80110;80111;80112;80113;80114;80115;80116;80117;80118;80119;80120;80121;80122;80123;80124;80125;80126;80127;80128;80129;80130;80131;80132;80133;80134;80135;80136;80137;80138;80139;80140 80094 49 GDVLEMNIR Unmodified 1045.5226 0.5226295 808 P0ADU2 ygiN Probable quinol monooxygenase YgiN yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 31.165 29.802 2 0.031525 13389 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 62.546 48.967 821400000 125700000 124960000 97640000 0 0 0 101080000 86214000 97293000 0 0 0 66203000 65485000 56816000 0 0 0 0 0 0 0 0 0 7002 808 6830 130203;130204;130205;130206;130207;130208;130209;130210;130211 80141;80142 80142 0 GDVLNYDEVMER Unmodified 1438.6398 0.6398441 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 35.614 34.026 2;3 5.3028E-09 16547 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 177.57 172.68 6008000000 212450000 216790000 186560000 0 0 0 813210000 812920000 816870000 0 0 0 647700000 589330000 543790000 0 0 0 378390000 389830000 400230000 0 0 0 7003 212 6831 130212;130213;130214;130215;130216;130217;130218;130219;130220;130221;130222;130223;130224;130225;130226;130227;130228;130229;130230;130231;130232 80143;80144;80145;80146;80147;80148;80149;80150;80151;80152;80153;80154;80155 80144 12 GDVLNYDEVMER Oxidation (M) 1454.6348 0.63475872 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By matching By matching By matching By matching 1 1 1 1 28.259 26.931 2 1 NaN NaN 20212000 0 0 0 0 0 0 7547400 0 6344600 0 0 0 4000100 2319500 0 0 0 0 0 0 0 0 0 0 7004 212 6831 130233;130234;130235;130236 0 GDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMK Unmodified 3934.7158 0.71581087 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 44.312 42.67 4 0.058927 21274 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 33.833 33.833 72300000 0 0 0 0 0 0 17253000 11412000 12874000 0 0 0 10614000 11839000 8309300 0 0 0 0 0 0 0 0 0 7005 520 6832 130237;130238;130239;130240;130241;130242 80156;80157 80156 2 GDVQAYQDIR Unmodified 1163.5571 0.55710075 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.091 19.464 2 0.00020305 7288 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.99 104.32 511920000 92519000 97142000 82479000 5063800 3235100 4049100 62616000 41204000 36485000 3226000 2645100 2835700 8898600 9531100 10278000 0 0 0 15529000 17058000 14656000 646380 819270 1004800 7006 1376 6833 130243;130244;130245;130246;130247;130248;130249;130250;130251;130252;130253;130254;130255;130256;130257;130258;130259;130260;130261;130262;130263 80158;80159;80160;80161;80162;80163;80164;80165 80164 8 GDVVVMVSGALVPSGTTNTASVHVL Unmodified 2409.2574 0.25736026 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 2 1 52.676 51.41 2;3 1.0009E-09 25481 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.27 150.25 807390000 87045000 76852000 57016000 0 0 0 35972000 45119000 40451000 0 0 0 37003000 98990000 85547000 0 0 0 121900000 98449000 23048000 0 0 0 7007 771 6834 130264;130265;130266;130267;130268;130269;130270;130271;130272;130273;130274;130275;130276;130277;130278;130279;130280;130281;130282 80166;80167;80168;80169;80170;80171;80172;80173;80174;80175;80176;80177;80178;80179;80180;80181;80182;80183;80184 80166 19 GDVVYLDLR Unmodified 1048.5553 0.55530983 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.886 35.032 2 0.0006636 13793 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 104.44 73.825 1092400000 17114000 15528000 14402000 4262600 0 3787800 160780000 157920000 144160000 37932000 38094000 34781000 102020000 93128000 76987000 0 0 0 52390000 63832000 49511000 7987700 8718300 9096300 7008 25 6835 130283;130284;130285;130286;130287;130288;130289;130290;130291;130292;130293;130294;130295;130296;130297;130298;130299;130300;130301;130302 80185;80186;80187;80188;80189;80190;80191;80192;80193;80194;80195;80196;80197 80185 12 GDVYTGLQAETFSEDDFDFAQQHLR Unmodified 2888.2889 0.28893098 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 48.728 47.5 3 2.8095E-08 23162 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.67 111.67 238460000 23910000 20557000 16450000 0 0 0 19706000 21074000 19214000 0 0 0 17087000 15832000 13947000 0 0 2258600 24909000 21898000 21613000 0 0 0 7009 433 6836 130303;130304;130305;130306;130307;130308;130309;130310;130311;130312;130313;130314;130315 80198 80198 1 GDWALLTSGSK Unmodified 1133.5717 0.57168818 1205 P23256 malY Protein MalY;Cystathionine beta-lyase MalY;Maltose regulon modulator yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.699 33.233 2 0.00039664 16286 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.681 78.9 74432000 4135700 6059900 0 0 0 0 11340000 7890200 9067500 0 0 0 6173100 5092400 5324700 0 0 0 6241600 6371400 6735900 0 0 0 7010 1205 6837 130316;130317;130318;130319;130320;130321;130322;130323;130324;130325;130326 80199;80200 80199 2 GDWCAQLQQAWYEHIPLSEK Unmodified 2458.1376 0.13757947 799 P0ADQ2 yiiD Uncharacterized protein YiiD yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.463 49.063 3 6.2413E-07 24250 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 95.957 86.783 377320000 46673000 46791000 37636000 0 0 0 24409000 25587000 25466000 0 0 0 29549000 26261000 28370000 0 0 0 32521000 22389000 31671000 0 0 0 7011 799 6838 130327;130328;130329;130330;130331;130332;130333;130334;130335;130336;130337;130338 80201;80202;80203;80204 80202 4 GDWFNVGGK Unmodified 978.45593 0.45593014 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 33.17 31.753 1;2 0.0048469 14930 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.75 94.055 462910000 164830000 133020000 121490000 0 0 0 9447300 10364000 9602500 0 0 0 3751300 0 0 0 0 0 0 5927600 4478300 0 0 0 7012 1816 6839 130339;130340;130341;130342;130343;130344;130345;130346;130347;130348;130349;130350 80205;80206;80207 80207 0 GDWLDCAK Unmodified 963.41202 0.41201641 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.671 24.598 2 0.0037473 10983 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.55 89.55 2342800000 169540000 161740000 161180000 0 0 0 304180000 299440000 274870000 0 0 0 148020000 135770000 139530000 0 0 0 181490000 204620000 162430000 0 0 0 7013 320 6840 130351;130352;130353;130354;130355;130356;130357;130358;130359;130360;130361;130362 80208;80209;80210;80211;80212;80213;80214;80215;80216;80217;80218;80219 80212 12 GDWLVAMPQGLDAR Unmodified 1527.7504 0.7503976 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 48.999 47.764 2 1.8868E-05 23399 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 115.29 111.4 868370000 88806000 85822000 87067000 0 0 0 97455000 101560000 96009000 0 0 0 63534000 52218000 60587000 0 0 6490500 40572000 42612000 45640000 0 0 0 7014 1284 6841 130363;130364;130365;130366;130367;130368;130369;130370;130371;130372;130373;130374;130375 80220;80221;80222;80223;80224;80225;80226;80227;80228 80223 3 GDWQNEVNVR Unmodified 1215.5632 0.56324876 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 23.839 22.991 2;3 1.8079E-05 10202 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.4 146.46 25054000000 1146300000 993210000 886610000 13042000 13044000 13545000 3235500000 3202400000 3251400000 30580000 28089000 25628000 2230600000 2283600000 2379800000 14036000 9509200 10305000 1579200000 1635100000 2032200000 12060000 14107000 14407000 7015 212 6842 130376;130377;130378;130379;130380;130381;130382;130383;130384;130385;130386;130387;130388;130389;130390;130391;130392;130393;130394;130395;130396;130397;130398;130399;130400;130401;130402;130403;130404;130405;130406;130407;130408;130409;130410 80229;80230;80231;80232;80233;80234;80235;80236;80237;80238;80239;80240;80241;80242;80243;80244;80245;80246;80247;80248;80249;80250;80251;80252;80253;80254 80235 26 GDYAVNVNYNVQNAGEKPLEISSFGQLK Unmodified 3053.5094 0.50942886 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 43.545 42.032 3 6.4501E-08 20501 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 106.11 100.27 76010000 0 0 4841800 0 0 0 7153900 5732100 0 0 0 0 7681300 7681700 6308100 0 0 0 13815000 11036000 11759000 0 0 0 7016 1267 6843 130411;130412;130413;130414;130415;130416;130417;130418;130419 80255;80256 80256 2 GDYEDRVDDYIIK Unmodified 1599.7417 0.74166663 446 P0A8M6 yeeX UPF0265 protein YeeX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 30.931 29.506 2;3 9.8723E-07 13729 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 144.89 126.14 5847600000 495870000 458470000 401770000 18887000 19241000 18970000 492700000 508710000 552020000 219280000 181400000 177470000 288070000 307890000 295190000 43440000 31996000 43601000 392520000 361930000 413840000 34956000 41087000 48317000 7017 446 6844 130420;130421;130422;130423;130424;130425;130426;130427;130428;130429;130430;130431;130432;130433;130434;130435;130436;130437;130438;130439;130440;130441;130442;130443;130444;130445;130446;130447;130448;130449;130450;130451;130452;130453;130454;130455;130456;130457;130458;130459;130460;130461;130462;130463;130464;130465;130466 80257;80258;80259;80260;80261;80262;80263;80264;80265;80266;80267;80268;80269;80270;80271;80272;80273;80274;80275;80276;80277;80278;80279;80280;80281;80282;80283;80284;80285;80286;80287;80288;80289;80290;80291;80292;80293;80294;80295;80296;80297;80298;80299;80300;80301;80302 80295 46 GDYGGYK Unmodified 758.32352 0.32351898 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.53 12.413 2 0.12809 3280 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 48.761 48.761 261000000 16837000 14807000 13102000 748000 685410 700510 27926000 28715000 25036000 0 0 0 22918000 23271000 20647000 0 0 0 24068000 19991000 21549000 0 0 0 7018 679 6845 130467;130468;130469;130470;130471;130472;130473;130474;130475;130476;130477;130478;130479;130480;130481 80303;80304 80304 2 GDYGGYKDDSGVHHLNVLDFQR Unmodified 2491.1516 0.15164963 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 2 1 1 3 3 3 2 1 3 3 3 3 3 3 29.552 28.19 3;4;5 8.9166E-35 13313 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 203.84 203.59 3406200000 197000000 151870000 182500000 69968000 56469000 62027000 319810000 307720000 313720000 6462200 2426000 4246100 251010000 206910000 178280000 0 3137700 1423300 263120000 241180000 261170000 109470000 102530000 113790000 7019 679 6846 130482;130483;130484;130485;130486;130487;130488;130489;130490;130491;130492;130493;130494;130495;130496;130497;130498;130499;130500;130501;130502;130503;130504;130505;130506;130507;130508;130509;130510;130511;130512;130513;130514;130515;130516;130517;130518;130519;130520;130521;130522;130523;130524;130525;130526;130527;130528;130529;130530;130531;130532;130533;130534;130535;130536;130537;130538;130539;130540;130541;130542 80305;80306;80307;80308;80309;80310;80311;80312;80313;80314;80315;80316;80317;80318;80319;80320;80321;80322;80323;80324;80325;80326;80327;80328;80329;80330;80331;80332;80333;80334;80335;80336;80337;80338;80339;80340;80341;80342;80343;80344;80345;80346;80347;80348;80349;80350;80351;80352;80353;80354 80308 50 GDYLAYSEEEHPVALQLGGSDPAALAQCAK Unmodified 3159.4819 0.48189348 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.961 42.446 3 5.0165E-13 20810 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.45 132.45 160970000 19718000 16962000 16554000 0 0 0 15302000 10845000 12555000 0 0 0 9893300 12189000 9306500 0 0 0 14296000 11908000 11444000 0 0 0 7020 1399 6847 130543;130544;130545;130546;130547;130548;130549;130550;130551;130552;130553;130554 80355;80356;80357 80356 3 GDYVTPTQPFSELSFRPTK Unmodified 2169.0742 0.074234161 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41 39.104 3 1.1882E-06 19127 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.453 86.849 162610000 15702000 15088000 13961000 0 4237000 4680400 12911000 11875000 12754000 8578200 7349000 8426100 0 5079200 7227900 0 0 0 0 12810000 10416000 3680900 4164800 3667700 7021 1115 6848 130555;130556;130557;130558;130559;130560;130561;130562;130563;130564;130565;130566;130567;130568;130569;130570;130571;130572 80358;80359;80360;80361;80362;80363;80364 80361 7 GEAASNPEVIAR Unmodified 1212.6099 0.6098646 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.607 16.37 2 1.0927E-05 5628 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 155.06 145.84 1617000000 220380000 219290000 178720000 746270 540790 0 137550000 147020000 140160000 946510 0 0 90129000 85213000 92620000 0 0 0 110090000 95470000 98084000 0 0 0 7022 43 6849 130573;130574;130575;130576;130577;130578;130579;130580;130581;130582;130583;130584;130585;130586;130587 80365;80366;80367;80368;80369;80370;80371;80372;80373;80374;80375 80366 11 GEADAMICGTVGDYHEHFSVVK Unmodified 2421.0729 0.072930307 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 34.418 32.886 3;4 5.4635E-16 15958 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 155.01 155.01 2009300000 284230000 266190000 238980000 1606000 0 0 143590000 162280000 152230000 2530400 0 1894100 96351000 102910000 83497000 0 0 0 144490000 158790000 169720000 0 0 0 7023 1872 6850 130588;130589;130590;130591;130592;130593;130594;130595;130596;130597;130598;130599;130600;130601;130602;130603;130604;130605;130606;130607;130608;130609;130610;130611;130612;130613;130614 80376;80377;80378;80379;80380;80381;80382;80383;80384;80385;80386;80387;80388;80389;80390;80391;80392;80393;80394;80395;80396;80397;80398 80379 23 GEADNGR Unmodified 717.30418 0.30418052 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 3.02 3.9678 2 0.02186 641 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 75.269 75.269 9088400 0 0 0 0 0 0 0 0 220160 0 0 0 448020 272240 484090 0 0 0 2225100 2584100 2854800 0 0 0 7024 256 6851 130615;130616;130617;130618;130619;130620;130621 80399;80400;80401 80401 2 GEAEAAR Unmodified 702.32967 0.32966699 800 P0ADQ7 ygaM Uncharacterized protein YgaM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 3 2 2 1 1 1 1 1 1 1 1 1 2 2 1 2 2 2 1 1 1 7.2388 7.9772 2 0.0034949 878 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.74 107.74 1117100000 176650000 147070000 137620000 1640100 2030900 1867300 103320000 93885000 82721000 3618500 2811300 2404800 47832000 54641000 56383000 0 0 0 111440000 43904000 44750000 890430 700050 932590 7025 800 6852 130622;130623;130624;130625;130626;130627;130628;130629;130630;130631;130632;130633;130634;130635;130636;130637;130638;130639;130640;130641;130642;130643;130644;130645;130646;130647;130648;130649;130650;130651 80402;80403;80404;80405;80406;80407;80408;80409;80410;80411;80412;80413;80414 80407 10 GEAEQAR Unmodified 759.35113 0.35113072 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 5.0735 5.9155 2 0.0010668 968 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 137.44 122.22 2092000000 239100000 231400000 229540000 0 0 0 95697000 119280000 106870000 0 0 0 162540000 134530000 146110000 0 0 0 227960000 200830000 198110000 0 0 0 7026 385 6853 130652;130653;130654;130655;130656;130657;130658;130659;130660;130661;130662;130663;130664 80415;80416;80417;80418;80419;80420;80421;80422;80423;80424 80417 9 GEAIAAFMQEAPFIGR Unmodified 1706.845 0.84502627 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 53.088 51.685 2 1.2331E-08 25535 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.9 158.8 110770000 41712000 36998000 28388000 1554100 0 0 0 0 0 0 0 2118100 0 0 0 0 0 0 0 0 0 0 0 0 7027 1377 6854 130665;130666;130667;130668;130669 80425;80426 80425 2 GEAIGVIAAQSIGEPGTQLTMR Oxidation (M) 2214.1314 0.13143146 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 5 3 4 4 4 4 42.621 41.108 2;3 1.2353E-27 14515 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 184.48 159.16 710200000 0 0 0 0 0 0 0 0 0 83151000 50165000 56087000 0 0 0 86342000 81266000 68038000 0 0 0 97221000 100930000 86993000 7028 458 6855 130670;130671;130672;130673;130674;130675;130676;130677;130678;130679;130680;130681;130682;130683;130684;130685;130686;130687;130688;130689;130690;130691;130692;130693;130694;130695;130696;130697;130698;130699;130700;130701;130702;130703;130704 80427;80428;80429;80430;80431;80432;80433;80434;80435;80436;80437;80438;80439;80440;80441;80442;80443;80444;80445;80446;80447;80448;80449;80450;80451;80452;80453;80454;80455;80456;80457;80458;80459;80460;80461 80437 229 34 GEAIGVIAAQSIGEPGTQLTMR Unmodified 2198.1365 0.13651684 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 2 2 2 2 8 11 8 2 2 2 15 14 16 3 3 3 7 8 14 48.276 47.176 2;3;4 1.4056E-89 21571 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 338.51 334.68 14856000000 294930000 282560000 249410000 5965300 0 6393600 186040000 176620000 183330000 1322900000 1278400000 1251100000 209530000 222880000 194270000 1364000000 2115100000 2044300000 261660000 297250000 278440000 1067400000 449420000 1114400000 7029 458 6855 130705;130706;130707;130708;130709;130710;130711;130712;130713;130714;130715;130716;130717;130718;130719;130720;130721;130722;130723;130724;130725;130726;130727;130728;130729;130730;130731;130732;130733;130734;130735;130736;130737;130738;130739;130740;130741;130742;130743;130744;130745;130746;130747;130748;130749;130750;130751;130752;130753;130754;130755;130756;130757;130758;130759;130760;130761;130762;130763;130764;130765;130766;130767;130768;130769;130770;130771;130772;130773;130774;130775;130776;130777;130778;130779;130780;130781;130782;130783;130784;130785;130786;130787;130788;130789;130790;130791;130792;130793;130794;130795;130796;130797;130798;130799;130800;130801;130802;130803;130804;130805;130806;130807;130808;130809;130810;130811;130812;130813;130814;130815;130816;130817;130818;130819;130820;130821;130822;130823;130824;130825;130826;130827;130828;130829;130830;130831;130832;130833;130834;130835;130836;130837 80462;80463;80464;80465;80466;80467;80468;80469;80470;80471;80472;80473;80474;80475;80476;80477;80478;80479;80480;80481;80482;80483;80484;80485;80486;80487;80488;80489;80490;80491;80492;80493;80494;80495;80496;80497;80498;80499;80500;80501;80502;80503;80504;80505;80506;80507;80508;80509;80510;80511;80512;80513;80514;80515;80516;80517;80518;80519;80520;80521;80522;80523;80524;80525;80526;80527;80528;80529;80530;80531;80532;80533;80534;80535;80536;80537;80538;80539;80540;80541;80542;80543;80544;80545;80546;80547;80548;80549;80550;80551;80552;80553;80554;80555;80556;80557;80558;80559;80560;80561;80562;80563;80564;80565;80566;80567;80568;80569;80570;80571;80572;80573;80574;80575;80576;80577;80578;80579;80580;80581;80582;80583;80584;80585;80586;80587;80588 80585 124 GEALLSK Unmodified 716.40685 0.40685468 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 14.405 14.75 2 0.012974 3951 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 84.244 53.575 101410000 10055000 0 9389300 0 0 0 39920000 1852100 0 8279600 7517100 7151900 0 0 0 5864900 0 0 0 0 0 3997100 3461200 3925100 7030 1876 6856 130838;130839;130840;130841;130842;130843;130844;130845;130846;130847;130848 80589;80590;80591 80589 3 GEANGVTVYDDFAHHPTAILATLAALR Unmodified 2822.4351 0.4351417 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 53.504 52.124 4 1.1184E-05 25558 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 80.132 77.819 189720000 24464000 17791000 18507000 0 0 0 0 0 0 0 0 0 20856000 16503000 19968000 0 0 0 28029000 21816000 21790000 0 0 0 7031 1500 6857 130849;130850;130851;130852;130853;130854;130855;130856;130857 80592;80593;80594;80595;80596 80592 5 GEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNR Unmodified 4053.992 0.99196768 1570 P45470 yhbO Protein YhbO yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 50.167 48.738 4 0.17107 22753 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 1.0862 0.6501 261940000 0 0 0 0 0 0 42061000 45965000 44747000 0 0 0 24974000 27338000 21175000 0 0 0 20624000 18884000 16175000 0 0 0 7032 1570 6858 130858;130859;130860;130861;130862;130863;130864;130865;130866 80597 80597 1 GEATAHLIEDIPTGIYTIPEISSVGK Unmodified 2710.4065 0.40652692 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 51.648 50.47 2;3 2.9759E-22 24637 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 245.3 245.3 1349300000 198000000 198750000 227870000 6313300 7966800 5774500 48598000 48406000 47325000 6936400 6390200 7551100 65556000 57353000 48946000 5129600 4663300 3893600 112630000 108680000 116880000 5629700 4330000 5692500 7033 1302 6859 130867;130868;130869;130870;130871;130872;130873;130874;130875;130876;130877;130878;130879;130880;130881;130882;130883;130884;130885;130886;130887;130888;130889;130890;130891;130892;130893;130894;130895;130896;130897;130898;130899;130900;130901;130902 80598;80599;80600;80601;80602;80603;80604;80605;80606;80607;80608;80609;80610;80611;80612;80613;80614;80615 80611 18 GEAVSDAR Unmodified 803.37735 0.37734547 260 P0A6L7 uxaB Altronate oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 9.4995 10.353 2 0.070106 2133 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 55.531 16.694 5228600 0 0 0 0 0 0 1079400 0 622550 0 0 0 1897700 1629000 0 0 0 0 0 0 0 0 0 0 7034 260 6860 130903;130904;130905;130906 80616 80616 1 GEAYKKPDHYEEIHMPK Unmodified 2070.9833 0.98331066 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.507 14.917 4 0.099055 4074 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 29.077 25.79 66392000 0 0 0 2534300 2796100 3195500 0 0 0 5933600 9188800 5118600 0 0 0 0 2253700 2077300 4148300 0 0 10265000 8490000 10391000 7035 660 6861 130907;130908;130909;130910;130911;130912;130913;130914;130915;130916;130917;130918 80617;80618;80619;80620 80617 4 GECEMFIIHAR Unmodified 1361.622 0.62202597 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.826 26.679 3 0.00071255 12187 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.5 64.51 156200000 21366000 15560000 14573000 0 0 0 9644900 10565000 9538800 0 0 0 11694000 11251000 10430000 0 0 0 15090000 13230000 13258000 0 0 0 7036 1399 6862 130919;130920;130921;130922;130923;130924;130925;130926;130927;130928;130929;130930 80621;80622;80623;80624;80625 80623 5 GEDALIIYDDLSK Unmodified 1450.7191 0.71914028 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.828 44.183 2 7.2892E-06 20798 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 133.07 123.73 307300000 16768000 8797800 12056000 2656000 0 2437700 18488000 19877000 20316000 7438500 4045300 3978000 29825000 27947000 24789000 0 0 0 31822000 28231000 31514000 6447300 5672800 4191900 7037 645 6863 130931;130932;130933;130934;130935;130936;130937;130938;130939;130940;130941;130942;130943;130944;130945;130946;130947;130948;130949;130950 80626;80627;80628;80629;80630;80631;80632;80633;80634;80635;80636;80637;80638;80639 80638 11 GEDAWPITSTTFILIHK Unmodified 1928.0044 0.0043636815 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 1 2 2 2 1 50.578 49.274 2;3 3.0679E-07 24457 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 108.34 103.44 1699900000 8430700 11605000 8992200 0 0 0 204200000 220310000 183450000 0 0 0 172600000 175250000 156720000 0 1072900 0 187980000 182670000 184340000 2324000 0 0 7038 994 6864 130951;130952;130953;130954;130955;130956;130957;130958;130959;130960;130961;130962;130963;130964;130965;130966;130967;130968;130969;130970;130971;130972;130973 80640;80641;80642;80643;80644;80645;80646;80647;80648;80649;80650;80651;80652;80653;80654;80655;80656 80640 17 GEDHINNTPR Unmodified 1151.5319 0.53194863 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 10.393 11.209 2;3 1.84E-06 2593 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.59 134.2 4083100000 259180000 228080000 190240000 0 0 0 379680000 379600000 405040000 0 0 0 307210000 316540000 359120000 0 0 0 471050000 393480000 393850000 0 0 0 7039 92 6865 130974;130975;130976;130977;130978;130979;130980;130981;130982;130983;130984;130985;130986;130987;130988;130989;130990;130991;130992;130993;130994;130995;130996;130997 80657;80658;80659;80660;80661;80662;80663;80664;80665;80666;80667;80668;80669;80670;80671;80672;80673;80674;80675;80676;80677;80678;80679;80680;80681;80682 80671 26 GEDIEPLR Unmodified 927.46616 0.46616048 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.607 20.087 2 0.00067698 7882 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.84 114.17 2502000000 165800000 0 137700000 0 0 0 294430000 292140000 303160000 0 0 0 199760000 190750000 276310000 0 0 0 221230000 210970000 209760000 0 0 0 7040 441 6866 130998;130999;131000;131001;131002;131003;131004;131005;131006;131007;131008;131009 80683;80684;80685;80686;80687;80688;80689;80690;80691;80692;80693;80694 80685 12 GEDISAGAVVFPAGTR Unmodified 1545.7787 0.77872084 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.552 34.98 2 1.3969E-10 16717 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.38 149.62 236540000 26818000 28664000 25254000 0 0 0 22485000 20852000 23393000 0 0 0 19526000 17015000 0 0 0 0 17670000 18260000 16604000 0 0 0 7041 1076 6867 131010;131011;131012;131013;131014;131015;131016;131017;131018;131019;131020;131021 80695;80696;80697;80698;80699;80700;80701;80702;80703;80704;80705 80702 10 GEDMGDYGVLCR Unmodified 1370.5595 0.55948529 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 30.406 28.992 2 3.7698E-08 13607 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 160.59 142.72 90514000 8399300 6696500 5733900 0 0 0 8203500 6132500 7502400 0 0 1253300 6792800 6642000 7094600 0 0 0 8721700 9511000 7831000 0 0 0 7042 1259 6868 131022;131023;131024;131025;131026;131027;131028;131029;131030;131031;131032;131033;131034 80706;80707;80708;80709;80710;80711;80712;80713 80708 8 GEDQPNK Unmodified 786.3508 0.35079637 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.2897 5.1778 2 0.0045648 840 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 103.28 102.01 133100000 0 0 0 0 0 0 4018000 6886100 7050000 0 0 0 13651000 20148000 17553000 0 0 0 24833000 20028000 18931000 0 0 0 7043 634 6869 131035;131036;131037;131038;131039;131040;131041;131042;131043 80714;80715;80716;80717;80718;80719 80717 6 GEDQPNKK Unmodified 914.44576 0.44575938 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 4.0251 4.9158 2 0.0011956 685 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 116.11 112.13 2207300000 225830000 223540000 246340000 0 50426 72882 0 0 245050 0 0 0 206960000 210730000 140030000 0 0 0 305610000 292860000 355010000 0 0 0 7044 634 6870 131044;131045;131046;131047;131048;131049;131050;131051;131052;131053;131054;131055;131056;131057 80720;80721;80722;80723;80724;80725;80726;80727;80728;80729;80730 80722 11 GEDVVVPGLFAVGEIACVSVHGANR Unmodified 2551.2853 0.28530634 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.414 52.116 3 3.1101E-10 20842 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 119.34 117.77 803710000 34172000 23184000 28868000 6474600 7187800 7732800 51536000 54305000 61184000 10402000 8449700 7370100 37173000 40028000 43344000 2655600 3575000 0 163890000 116440000 62250000 11675000 10541000 11273000 7045 698 6871 131058;131059;131060;131061;131062;131063;131064;131065;131066;131067;131068;131069;131070;131071;131072;131073;131074;131075;131076;131077;131078;131079;131080 80731;80732;80733;80734;80735 80734 5 GEEEDRVR Unmodified 988.45739 0.4573867 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 1 By matching By MS/MS 1 1 5.5858 6.3134 2 0.00084446 1352 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 136.16 105.59 21591000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 448030 21143000 0 0 0 7046 946 6872 131081;131082 80736 80736 1 GEEILANWSTFATK Unmodified 1565.7726 0.77257283 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 46.64 45.385 2 6.6697E-11 22676 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.87 121.9 201190000 106270000 0 94924000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7047 218 6873 131083;131084;131085;131086;131087 80737;80738;80739;80740;80741 80737 5 GEEVDRIVGLEIGADDYIPKPFNPR Unmodified 2798.4239 0.42390832 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 47.633 46.984 4 0.00013608 17877 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 70.391 54.691 55150000 0 0 0 3249600 3502000 3701400 0 0 0 0 0 0 0 0 0 14507000 13813000 16377000 0 0 0 0 0 0 7048 570 6874 131088;131089;131090;131091;131092;131093 80742;80743;80744;80745;80746;80747 80742 6 GEEVSRPSDDILFEIAQLAAQGVR Unmodified 2599.3242 0.32419427 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.205 53.751 3 1.8185E-15 21598 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 149.71 146.06 1350300000 122930000 101200000 103180000 16046000 11305000 9586600 71043000 55588000 58694000 16634000 11891000 14606000 88401000 91649000 97497000 0 0 0 160440000 141740000 139160000 8341600 14440000 15981000 7049 862 6875 131094;131095;131096;131097;131098;131099;131100;131101;131102;131103;131104;131105;131106;131107;131108;131109;131110;131111;131112;131113;131114 80748;80749;80750;80751;80752;80753;80754 80752 7 GEEYDAAWNSFVVK Unmodified 1613.7362 0.73618733 857 P0AEG4 dsbA Thiol:disulfide interchange protein DsbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 44.175 42.66 2;3 3.8233E-08 20652 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.37 137.41 2167500000 188020000 200260000 171810000 0 0 0 118320000 120480000 122750000 0 0 0 176550000 160270000 173540000 0 0 0 250640000 243170000 241680000 0 0 0 7050 857 6876 131115;131116;131117;131118;131119;131120;131121;131122;131123;131124;131125;131126;131127;131128;131129;131130;131131;131132;131133;131134;131135;131136;131137;131138 80755;80756;80757;80758;80759;80760;80761;80762;80763;80764;80765;80766;80767;80768;80769;80770;80771;80772;80773;80774;80775;80776;80777;80778;80779;80780 80774 26 GEFNVPFGR Unmodified 1021.4981 0.49812931 853 P0AEE8 dam DNA adenine methylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.386 33.072 2 0.027742 12925 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 60.682 53.011 30545000 4003400 3746000 0 0 0 0 1991700 0 0 2069600 2043100 1735300 2442700 0 0 3807100 3136200 2552900 0 0 3016800 0 0 0 7051 853 6877 131139;131140;131141;131142;131143;131144;131145;131146;131147;131148;131149 80781;80782;80783 80782 3 GEFYQQLTNDLETAR Unmodified 1783.8377 0.83769228 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 44.038 42.518 2;3 4.9081E-27 20949 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 234.79 230.78 1822800000 150040000 147300000 140070000 0 0 0 196790000 192640000 171910000 0 0 0 150180000 160120000 172570000 0 0 0 119760000 126740000 94721000 0 0 0 7052 635 6878 131150;131151;131152;131153;131154;131155;131156;131157;131158;131159;131160;131161;131162;131163;131164;131165;131166;131167;131168;131169;131170;131171;131172 80784;80785;80786;80787;80788;80789;80790;80791;80792;80793;80794;80795;80796 80787 13 GEGAICLQTSAK Unmodified 1233.6023 0.60233638 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 18.44 19.012 2 1.5493E-06 6744 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 147.73 127.43 252090000 14991000 8647900 0 0 551940 0 30407000 31994000 36240000 0 0 0 20066000 18370000 19177000 0 1419600 0 24281000 24222000 21722000 0 0 0 7053 1916 6879 131173;131174;131175;131176;131177;131178;131179;131180;131181;131182;131183;131184;131185 80797;80798;80799;80800;80801;80802;80803;80804;80805 80805 8 GEGDAEAAK Unmodified 846.37193 0.37192574 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 4.6222 5.4758 2 0.0056763 1063 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 76.478 33.563 74902000 0 0 0 0 0 0 26143000 24068000 1174300 0 0 0 0 0 0 0 0 0 0 0 23517000 0 0 0 7054 648 6880 131186;131187;131188;131189;131190 80806;80807 80806 2 GEGDIDNAPWPVADEK Unmodified 1711.7689 0.76894402 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.874 34.314 2 2.148E-49 16650 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 278.41 278.41 2016800000 175670000 182580000 150950000 0 0 412450 148190000 157140000 155690000 0 0 0 160250000 144350000 142810000 0 0 0 201030000 197980000 199710000 0 0 0 7055 170 6881 131191;131192;131193;131194;131195;131196;131197;131198;131199;131200;131201;131202;131203 80808;80809;80810;80811;80812;80813;80814;80815;80816;80817;80818;80819 80810 12 GEGDKEK Unmodified 761.35555 0.35554739 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 1 By matching By MS/MS 1 1 1.5675 2.4701 2 0.15814 242 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 55.441 24.772 3856100 0 0 0 0 0 0 0 0 0 0 0 0 1568200 0 0 0 0 0 2287800 0 0 0 0 0 7056 1184 6882 131204;131205 80820 80820 1 GEGDSVHAGTVVQDGSVLFR Unmodified 2028.9865 0.98648179 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.538 32.805 3 6.1411E-06 13017 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 88.283 84.421 96232000 5835000 9495000 8028000 0 0 0 17210000 13912000 15273000 6946300 6084400 3317700 0 5297000 4832900 0 0 0 0 0 0 0 0 0 7057 1980 6883 131206;131207;131208;131209;131210;131211;131212;131213;131214;131215;131216 80821;80822;80823;80824 80821 4 GEGEAEMLGFYEAMQNHTIK Unmodified 2254.0035 0.003453758 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.441 44.956 3 3.6257E-15 21903 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 153.21 152.79 199720000 30704000 30071000 32255000 0 0 0 15965000 16485000 14281000 0 0 0 11447000 9899300 9690000 0 0 0 10424000 8661500 9835600 0 0 0 7058 1341 6884 131217;131218;131219;131220;131221;131222;131223;131224;131225;131226;131227;131228 80825;80826;80827;80828;80829;80830;80831;80832 80830 8 GEGFQQAVAAHK Unmodified 1241.6153 0.61528433 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 13.333 14.097 2;3 3.0171E-06 4392 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.11 133.57 4714200000 492380000 444140000 437720000 874310 0 0 470360000 386420000 361950000 1040100 1428400 1262500 403500000 420170000 369170000 0 0 0 324290000 303750000 294870000 0 0 920290 7059 72 6885 131229;131230;131231;131232;131233;131234;131235;131236;131237;131238;131239;131240;131241;131242;131243;131244;131245;131246;131247;131248;131249;131250;131251;131252;131253;131254;131255;131256;131257 80833;80834;80835;80836;80837;80838;80839;80840;80841;80842;80843;80844;80845;80846;80847;80848;80849;80850;80851;80852;80853;80854;80855;80856 80845 24 GEGGFGHSGR Unmodified 959.42094 0.42094162 135 P06968 dut Deoxyuridine 5'-triphosphate nucleotidohydrolase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 8.9778 9.8019 2 0.00023357 2414 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.18 87.992 496660000 69875000 73926000 57434000 0 0 0 20249000 13632000 14907000 0 0 0 13478000 17448000 14125000 0 0 0 71136000 68626000 61820000 0 0 0 7060 135 6886 131258;131259;131260;131261;131262;131263;131264;131265;131266;131267;131268;131269 80857;80858;80859;80860;80861;80862;80863;80864;80865;80866;80867 80864 11 GEGGILVNK Unmodified 885.49198 0.4919813 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 2 1 1 1 1 1 16.01 16.483 2 0.0027306 4834 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 84.097 48.848 94802000 0 0 0 0 0 2732600 9058000 8545800 8504000 15435000 14637000 13878000 0 2588400 1555600 4842500 2983100 3759800 0 2792700 3490100 0 0 0 7061 25 6887 131270;131271;131272;131273;131274;131275;131276;131277;131278;131279;131280;131281;131282;131283;131284 80868;80869;80870;80871 80869 4 GEGGYLLNK Unmodified 949.4869 0.48689592 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.051 19.413 2 0.0065504 5409 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 70.525 55.144 1398200000 77920000 76910000 56980000 22150000 20163000 18668000 76285000 74764000 70744000 13753000 10256000 9626600 87902000 82875000 74315000 3909300 0 0 198870000 170010000 175930000 25235000 24951000 25939000 7062 698 6888 131285;131286;131287;131288;131289;131290;131291;131292;131293;131294;131295;131296;131297;131298;131299;131300;131301;131302;131303;131304;131305;131306 80872;80873;80874;80875;80876;80877;80878 80876 7 GEGIACEAVALLIK Unmodified 1442.7803 0.78030075 1648 P62617 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 51.913 50.733 2 0.019171 24729 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 58.676 41.651 75627000 8933300 8453000 7551600 0 0 0 0 0 0 0 0 0 7094100 6393800 8247700 0 0 0 9052300 10504000 9397400 0 0 0 7063 1648 6889 131307;131308;131309;131310;131311;131312;131313;131314;131315 80879;80880;80881;80882;80883;80884 80880 0 GEGIPWEGNYSSWLEQK Unmodified 1978.9061 0.9061062 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.018 48.612 2 7.3359E-14 23753 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 165.07 159.99 1454900000 148340000 144940000 139380000 0 0 0 93843000 92242000 89765000 0 0 0 105260000 102620000 98032000 0 0 0 157270000 142010000 141180000 0 0 0 7064 561 6890 131316;131317;131318;131319;131320;131321;131322;131323;131324;131325;131326;131327 80885;80886;80887;80888;80889;80890;80891;80892;80893;80894;80895;80896 80892 12 GEGLGNQFLTNIR Unmodified 1417.7314 0.73137672 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.209 36.593 2 3.0371E-13 18186 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 201.33 189.84 1929700000 109710000 160650000 89337000 3085500 3001100 2847400 152640000 166750000 155970000 3218600 2699100 3072700 158310000 143380000 147400000 3767100 1673300 1749900 218400000 199740000 193090000 3250800 3599800 2294300 7065 680 6891 131328;131329;131330;131331;131332;131333;131334;131335;131336;131337;131338;131339;131340;131341;131342;131343;131344;131345;131346;131347;131348;131349;131350;131351 80897;80898;80899;80900;80901;80902;80903 80898 7 GEGLVLHEAWLK Unmodified 1350.7296 0.7295858 1945 P77808 yfaY NMN amidohydrolase-like protein YfaY yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 2 1 1 33.513 31.989 2;3 0.0013692 15033 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 72.434 40.94 332050000 22992000 23588000 24227000 0 0 0 43440000 46752000 36614000 0 0 0 15839000 16986000 18547000 0 0 0 46924000 16432000 19714000 0 0 0 7066 1945 6892 131352;131353;131354;131355;131356;131357;131358;131359;131360;131361;131362;131363;131364;131365;131366;131367 80904;80905;80906 80906 3 GEGMAIAK Unmodified 775.38982 0.38982441 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.778 13.602 2 0.14503 4081 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 41.892 16.334 185350000 28299000 26304000 26833000 0 0 0 12124000 14361000 9325800 0 0 0 4678100 2991200 0 0 0 0 29896000 25664000 4871500 0 0 0 7067 119 6893 131368;131369;131370;131371;131372;131373;131374;131375;131376;131377;131378 80907 80907 1 GEGMVLTGPK Oxidation (M) 1003.5008 0.50083142 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 7 7 6 1 1 4 5 7 5 1 2 2 6 6 5 17.424 17.574 2 0.00065655 3805 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 98.033 93.896 1870000000 3394000 4155000 0 430590 0 0 2272200 0 25333000 202170000 142820000 142300000 2213900 3795100 8244300 309910000 203720000 194240000 4172100 10588000 9219300 213010000 195990000 192040000 7068 458 6894 131379;131380;131381;131382;131383;131384;131385;131386;131387;131388;131389;131390;131391;131392;131393;131394;131395;131396;131397;131398;131399;131400;131401;131402;131403;131404;131405;131406;131407;131408;131409;131410;131411;131412;131413;131414;131415;131416;131417;131418;131419;131420;131421;131422;131423;131424;131425;131426;131427;131428;131429;131430;131431;131432;131433;131434;131435;131436;131437;131438;131439;131440;131441;131442;131443;131444;131445;131446;131447;131448;131449 80908;80909;80910;80911;80912;80913;80914;80915;80916;80917;80918;80919;80920;80921;80922;80923;80924;80925;80926;80927;80928;80929;80930;80931;80932;80933;80934;80935;80936;80937;80938;80939;80940;80941;80942;80943;80944;80945;80946;80947;80948;80949;80950;80951 80918 230 39 GEGMVLTGPK Unmodified 987.50592 0.5059168 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 2 2 2 1 1 1 3 1 1 20.358 20.483 2 0.00014418 5927 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 126.41 122.1 36984000000 329180000 288250000 265870000 14555000 14795000 13604000 249070000 237560000 277380000 2085200000 1985500000 2040800000 271420000 224750000 196930000 7043500000 6002300000 6391600000 354240000 341780000 383360000 2688200000 2767500000 2516400000 7069 458 6894 131450;131451;131452;131453;131454;131455;131456;131457;131458;131459;131460;131461;131462;131463;131464;131465;131466;131467;131468;131469;131470;131471;131472;131473;131474;131475;131476;131477;131478;131479;131480 80952;80953;80954;80955;80956;80957;80958;80959;80960;80961;80962;80963;80964;80965;80966;80967;80968;80969;80970;80971;80972;80973;80974;80975;80976;80977;80978;80979;80980 80956 27 GEGQPGDIETLEQLCR Unmodified 1800.8312 0.8312267 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.035 36.424 2 6.4666E-24 17581 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 213.84 210.17 648030000 29983000 25442000 26489000 12425000 11337000 10965000 46744000 43987000 44013000 16358000 16004000 14806000 36961000 37131000 35340000 5342900 4149100 4044600 61841000 61028000 58635000 13641000 15412000 15958000 7070 1383 6895 131481;131482;131483;131484;131485;131486;131487;131488;131489;131490;131491;131492;131493;131494;131495;131496;131497;131498;131499;131500;131501;131502;131503;131504 80981;80982;80983;80984;80985;80986;80987;80988;80989;80990;80991;80992;80993;80994;80995;80996;80997;80998;80999;81000;81001;81002;81003;81004 81000 24 GEGTPFPVQADFR Unmodified 1419.6783 0.67827852 1480 P37645 yhjG Uncharacterized protein YhjG yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 37.746 36.051 2 0.00075517 12683 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 73.781 60.012 49229000 15457000 14244000 0 2106900 2717800 2466400 0 12237000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7071 1480 6896 131505;131506;131507;131508;131509;131510 81005;81006;81007 81005 3 GEGWAAIVADLR Unmodified 1256.6513 0.65133548 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.964 49.666 2 2.4377E-06 24516 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.91 136.95 402560000 16621000 16790000 15529000 0 1058800 0 36707000 32319000 27449000 0 2876000 2557000 42387000 33957000 33130000 0 0 0 44658000 52364000 44159000 0 0 0 7072 1876 6897 131511;131512;131513;131514;131515;131516;131517;131518;131519;131520;131521;131522;131523;131524;131525 81008;81009;81010;81011;81012;81013;81014;81015;81016;81017;81018;81019 81011 12 GEIFHFNPGSVSIPK Unmodified 1627.8358 0.83584179 1710 P67095 yfcE Phosphodiesterase YfcE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 38.48 37.003 2;3 1.0567E-08 17135 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 144.28 140.75 1222400000 182840000 126130000 137220000 0 0 0 90378000 86486000 91322000 0 0 0 91035000 77600000 63896000 2406600 1623700 1496100 95600000 93480000 80925000 0 0 0 7073 1710 6898 131526;131527;131528;131529;131530;131531;131532;131533;131534;131535;131536;131537;131538;131539;131540;131541;131542;131543;131544;131545;131546;131547;131548;131549;131550;131551;131552 81020;81021;81022;81023;81024;81025;81026;81027;81028;81029;81030;81031;81032;81033;81034;81035;81036;81037;81038;81039 81039 20 GEIGEEER Unmodified 917.40904 0.40903953 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 2 2 1 1 1 1 11.28 11.849 2 9.9229E-06 3123 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 147.69 110.66 2546800000 148810000 163210000 9686600 8826400 0 0 330100000 389930000 11210000 59419000 53688000 52028000 420670000 0 367390000 15808000 11577000 14301000 9183400 9156000 381810000 26617000 30443000 32905000 7074 646 6899 131553;131554;131555;131556;131557;131558;131559;131560;131561;131562;131563;131564;131565;131566;131567;131568;131569;131570;131571;131572;131573;131574;131575;131576;131577;131578;131579;131580;131581;131582 81040;81041;81042;81043;81044;81045;81046;81047;81048;81049;81050;81051;81052;81053;81054;81055;81056 81049 17 GEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETR Unmodified 4393.2012 0.20124895 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1 2 2 2 2 2 1 53.763 52.326 4;5 4.2257E-35 25909 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.15 174.1 1738200000 189530000 184750000 167220000 0 0 0 135370000 168530000 26990000 0 0 0 126800000 110130000 102220000 0 0 0 236740000 258850000 31064000 0 0 0 7075 1485 6900 131583;131584;131585;131586;131587;131588;131589;131590;131591;131592;131593;131594;131595;131596;131597;131598;131599;131600;131601;131602;131603;131604 81057;81058;81059;81060;81061;81062;81063;81064;81065;81066;81067;81068;81069 81063 13 GEIHIVEPDLASVVK Unmodified 1604.8774 0.87737225 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 38.384 36.677 2;3 4.0639E-07 17791 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 144.47 121.55 534690000 6277900 5485300 5667700 0 0 0 56914000 57821000 39375000 0 0 0 49472000 52372000 44558000 0 0 0 69964000 76600000 70179000 0 0 0 7076 1307 6901 131605;131606;131607;131608;131609;131610;131611;131612;131613;131614;131615;131616;131617;131618;131619;131620;131621;131622;131623;131624;131625;131626 81070;81071;81072;81073;81074;81075;81076;81077;81078;81079;81080;81081;81082;81083;81084;81085;81086;81087;81088 81076 18 GEIIDEDDLPIK Unmodified 1355.682 0.68202649 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 39.558 37.728 2 1.8616E-05 18638 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 123.63 119.01 3610900000 0 0 0 995310 1610700 1348000 526050000 531500000 482100000 0 0 0 363890000 0 0 0 0 0 608910000 575240000 518220000 1052600 0 0 7077 441 6902 131627;131628;131629;131630;131631;131632;131633;131634;131635;131636;131637;131638;131639 81089;81090;81091;81092;81093;81094;81095;81096 81090 8 GEILGGMAAVEQPEKPAAQPK Unmodified 2120.0936 0.093589394 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 28.013 26.716 2;3 2.6436E-74 12056 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 296.04 291.19 10176000000 1572900000 1423600000 1321600000 18841000 18188000 19714000 381520000 382240000 365900000 52764000 69217000 57379000 642840000 525480000 526650000 18738000 20336000 22040000 799150000 904720000 904200000 40650000 45432000 41573000 7078 374 6903 131640;131641;131642;131643;131644;131645;131646;131647;131648;131649;131650;131651;131652;131653;131654;131655;131656;131657;131658;131659;131660;131661;131662;131663;131664;131665;131666;131667;131668;131669;131670;131671;131672;131673;131674;131675;131676;131677;131678;131679;131680;131681;131682;131683;131684;131685 81097;81098;81099;81100;81101;81102;81103;81104;81105;81106;81107;81108;81109;81110;81111;81112;81113;81114;81115;81116;81117;81118;81119;81120;81121;81122;81123;81124;81125;81126;81127;81128;81129;81130;81131;81132;81133;81134;81135;81136;81137;81138;81139;81140 81132 44 GEIMPNIPQMSAFWYAVR Unmodified 2109.0176 0.01758768 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.005 53.509 2 4.0363E-22 25398 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 183.79 180.66 892150000 0 0 0 0 0 0 89117000 65725000 84635000 0 0 0 85496000 86818000 76940000 0 0 0 131070000 134890000 137460000 0 0 0 7079 895 6904 131686;131687;131688;131689;131690;131691;131692;131693;131694 81141;81142;81143 81143 3 GEINVGAK Unmodified 786.42357 0.42356738 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 12.205 12.935 2 0.015927 3808 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.383 41.277 105150000 62086000 12597000 11075000 0 0 0 12814000 0 0 0 0 0 0 0 0 0 0 0 6582400 0 0 0 0 0 7080 1107 6905 131695;131696;131697;131698;131699 81144 81144 1 GEIPGLK Unmodified 712.41194 0.41194006 988 P0AG59 rpsN 30S ribosomal protein S14 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.081 21.195 2 0.10664 6943 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 52.683 32.837 2541700000 376960000 379790000 324860000 1879600 2337200 1998500 120590000 111410000 112310000 5443300 7408800 6449300 139990000 142330000 130500000 3079600 2520600 2587700 225210000 213390000 218140000 3352700 3902700 5263700 7081 988 6906 131700;131701;131702;131703;131704;131705;131706;131707;131708;131709;131710;131711;131712;131713;131714;131715;131716;131717;131718;131719;131720;131721;131722;131723 81145;81146;81147;81148;81149;81150;81151;81152;81153;81154;81155;81156;81157;81158;81159 81145 15 GEIPGLKK Unmodified 840.5069 0.50690308 988 P0AG59 rpsN 30S ribosomal protein S14 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 13.83 14.224 2 0.13345 4330 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 47.849 43.167 194320000 55635000 69389000 55595000 0 0 0 0 0 0 0 0 0 0 0 0 8033000 2825800 2844800 0 0 0 0 0 0 7082 988 6907 131724;131725;131726;131727;131728;131729 81160;81161 81160 2 GEIRPLAQADAAELDALIVPGGFGAAK Unmodified 2649.4126 0.41261535 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 51.906 50.708 2;3 2.0073E-30 25040 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 240.61 236.51 3031000000 262600000 271400000 250610000 2479200 2785600 2572300 328830000 338370000 348460000 2866800 2836100 2406200 180720000 167930000 171520000 1853400 0 1651100 245430000 242390000 203330000 0 0 0 7083 681 6908 131730;131731;131732;131733;131734;131735;131736;131737;131738;131739;131740;131741;131742;131743;131744;131745;131746;131747;131748;131749;131750;131751;131752;131753;131754;131755;131756;131757;131758;131759;131760;131761 81162;81163;81164;81165;81166;81167;81168;81169;81170;81171;81172;81173;81174;81175;81176;81177;81178;81179;81180;81181;81182 81165 21 GEISPDINTAMTSR Unmodified 1490.7035 0.70350699 746 P0ACT6 uidR HTH-type transcriptional regulator UidR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.633 27.385 2 3.9084E-11 12621 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.17 164.79 119410000 11871000 10113000 9724200 0 0 0 10178000 7813800 11137000 0 0 0 10247000 8609100 7440800 0 0 0 12260000 10561000 9455900 0 0 0 7084 746 6909 131762;131763;131764;131765;131766;131767;131768;131769;131770;131771;131772;131773 81183;81184;81185;81186;81187;81188;81189;81190;81191 81185 9 GEISYAASFIEWFAEEGKR Unmodified 2189.0429 0.042934032 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.605 53.24 3 2.8051E-05 26327 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83.849 79.496 529140000 75424000 79850000 80997000 0 0 885850 54398000 53644000 52682000 3678900 3784300 2595500 16414000 16070000 15137000 0 0 2860900 27591000 19879000 23246000 0 0 0 7085 1258 6910 131774;131775;131776;131777;131778;131779;131780;131781;131782;131783;131784;131785;131786;131787;131788;131789;131790 81192;81193;81194;81195 81194 4 GELEITDINR Unmodified 1158.5881 0.58806652 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 28.999 27.667 2 8.2836E-09 12791 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 186.3 152.5 2040500000 107480000 121110000 125000000 0 0 0 161510000 166300000 148400000 0 532000 0 166650000 160650000 149080000 0 0 0 235440000 257120000 241160000 0 0 0 7086 1489 6911 131791;131792;131793;131794;131795;131796;131797;131798;131799;131800;131801;131802;131803 81196;81197;81198;81199;81200;81201;81202;81203;81204 81197 9 GELFGAK Unmodified 720.38064 0.38063993 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.686 18.33 2 0.068758 6781 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 59.609 38.625 5136300000 470330000 422730000 358280000 2935200 2357400 2146400 464400000 436690000 416440000 0 0 0 464230000 417230000 437810000 0 0 0 397760000 444310000 397020000 0 814470 797830 7087 271 6912 131804;131805;131806;131807;131808;131809;131810;131811;131812;131813;131814;131815;131816;131817;131818;131819;131820 81205;81206;81207;81208;81209;81210;81211;81212;81213;81214 81209 9 GELGIMGTELNSELAK Unmodified 1660.8342 0.83418681 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.153 41.617 2 2.2617E-10 20546 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 188.91 179.59 413160000 33259000 27890000 26336000 1462600 1370900 1499000 30812000 31011000 32452000 0 0 0 33337000 34890000 26009000 0 0 0 47900000 41557000 43376000 0 0 0 7088 1044 6913 131821;131822;131823;131824;131825;131826;131827;131828;131829;131830;131831;131832;131833;131834;131835 81215;81216;81217;81218;81219;81220;81221;81222;81223 81217 7 GELHCVGATTLDEYR Unmodified 1719.7886 0.7886336 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 24.246 23.225 2;3 5.8858E-20 10313 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 246.26 237.95 1631500000 173940000 174460000 172770000 3480800 4743400 5330500 214530000 225750000 201690000 14283000 11440000 10380000 71201000 64576000 65584000 0 0 0 69868000 78832000 62529000 2096400 1587900 2439500 7089 1662 6914 131836;131837;131838;131839;131840;131841;131842;131843;131844;131845;131846;131847;131848;131849;131850;131851;131852;131853;131854;131855;131856;131857;131858;131859;131860;131861;131862;131863;131864;131865;131866;131867;131868;131869;131870;131871;131872;131873 81224;81225;81226;81227;81228;81229;81230;81231;81232;81233;81234;81235;81236;81237;81238;81239;81240;81241;81242;81243;81244 81231 21 GELHLSVLIENMR Unmodified 1509.7973 0.79734779 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 1 2 2 3 1 1 1 3 2 2 2 3 3 1 41.401 39.642 2;3 6.084E-09 19663 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 199.08 194.17 1233200000 84986000 68344000 61469000 3012300 2614900 1678300 130900000 117580000 118020000 3079200 3326000 1559800 104180000 86306000 90263000 0 0 0 127940000 112790000 113430000 0 0 1742500 7090 1388 6915 131874;131875;131876;131877;131878;131879;131880;131881;131882;131883;131884;131885;131886;131887;131888;131889;131890;131891;131892;131893;131894;131895;131896;131897;131898;131899;131900;131901;131902;131903;131904;131905;131906;131907;131908;131909 81245;81246;81247;81248;81249;81250;81251;81252;81253;81254;81255;81256;81257;81258;81259;81260;81261;81262;81263;81264;81265;81266;81267;81268;81269;81270;81271;81272;81273;81274;81275 81250 28 GELKPEQLAAALVSMK Unmodified 1683.9229 0.92294224 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 45.919 44.49 3 1.9396E-06 21858 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.485 69.077 133870000 42862000 41240000 44005000 3717600 0 1240300 0 0 0 0 0 0 0 0 0 0 0 0 808550 0 0 0 0 0 7091 48 6916 131910;131911;131912;131913;131914;131915 81276;81277;81278;81279 81277 4 GELLFFPTR Unmodified 1078.5811 0.58113065 1613 P56258 wecF TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 46.021 44.542 2 0.00061972 21575 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 105.57 97.628 66141000 2744300 2817600 3461300 0 460100 0 6285800 6394600 6652300 0 0 0 4847400 3873600 4375700 0 0 0 7932400 8235500 8060200 0 0 0 7092 1613 6917 131916;131917;131918;131919;131920;131921;131922;131923;131924;131925;131926;131927;131928 81280;81281;81282;81283;81284 81284 5 GELLFGTVDTWLIWK Unmodified 1776.9451 0.94505789 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 55.716 54.22 2 1.1225E-06 25804 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 145.91 140.22 1251000000 0 0 0 0 0 0 128850000 130880000 140980000 0 0 0 146400000 146440000 124500000 0 0 0 136640000 143660000 152650000 0 0 0 7093 239 6918 131929;131930;131931;131932;131933;131934;131935;131936;131937 81285;81286;81287;81288 81287 4 GELLVPER Unmodified 911.50763 0.50763136 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.55 22.687 2 0.010215 10112 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.77 72.731 277640000 10659000 8800400 8344700 0 0 0 35458000 35526000 32285000 2713400 2264000 2299800 23698000 14748000 19720000 0 0 0 21308000 29392000 29836000 0 0 587150 7094 27 6919 131938;131939;131940;131941;131942;131943;131944;131945;131946;131947;131948;131949;131950;131951;131952;131953 81289;81290;81291;81292;81293;81294;81295;81296;81297;81298 81289 10 GELQQLIK Unmodified 927.53893 0.53893149 705 P0AC69 grxD Glutaredoxin-4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 27.018 25.833 1;2 0.00021564 11453 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.2 117.54 8186400000 1005800000 970190000 870240000 11121000 9265600 8388300 464610000 468830000 468180000 9729900 9334400 8619500 659740000 598130000 582070000 5821800 4314700 5658800 679070000 684750000 631600000 11731000 8709700 10482000 7095 705 6920 131954;131955;131956;131957;131958;131959;131960;131961;131962;131963;131964;131965;131966;131967;131968;131969;131970;131971;131972;131973;131974;131975;131976;131977;131978;131979;131980;131981;131982;131983;131984;131985;131986;131987;131988;131989;131990;131991;131992 81299;81300;81301;81302;81303;81304;81305;81306;81307;81308;81309;81310;81311;81312;81313;81314;81315;81316;81317;81318 81314 15 GELTVDDSAIIGIIR Unmodified 1570.8566 0.85663681 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 51.203 50.398 2 5.1482E-09 19533 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 152.7 127.31 56453000 0 0 0 0 0 0 9883800 11034000 9263700 0 0 0 0 0 0 10139000 8108000 6754400 0 0 0 1269500 0 0 7096 536 6921 131993;131994;131995;131996;131997;131998;131999 81319;81320;81321 81319 2 GELVEIGGAFR Unmodified 1146.6033 0.60332266 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.939 35.282 2 0.00026375 16353 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 96.331 74.2 92764000 9496600 6463400 6349400 0 0 0 10977000 9343400 9380900 0 0 0 5942400 7421800 7407600 0 0 0 6399500 6354900 7227900 0 0 0 7097 389 6922 132000;132001;132002;132003;132004;132005;132006;132007;132008;132009;132010;132011 81322;81323;81324;81325;81326;81327 81326 6 GELVLDKDQFSYK Unmodified 1540.7773 0.77732386 1514 P39187 ytfJ Uncharacterized protein YtfJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 2 2 2 2 2 29.574 28.332 2;3 9.3642E-09 13177 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 156.51 121 561720000 100110000 109260000 88459000 0 0 0 30641000 21077000 35467000 0 0 0 22613000 23337000 19844000 0 0 0 39263000 35577000 36076000 0 0 0 7098 1514 6923 132012;132013;132014;132015;132016;132017;132018;132019;132020;132021;132022;132023;132024;132025;132026;132027;132028;132029;132030;132031;132032;132033;132034 81328;81329;81330;81331 81329 4 GELVTVSETLQQILENHDYPQPVK Unmodified 2736.397 0.39702486 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 1 2 2 2 53.889 52.501 3;4 1.0889E-40 25957 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 213.15 206.78 1917700000 194070000 169950000 181000000 0 0 0 144310000 164890000 131320000 0 0 6524300 114950000 129880000 121330000 2014000 0 0 180190000 193710000 183570000 0 0 0 7099 292 6924 132035;132036;132037;132038;132039;132040;132041;132042;132043;132044;132045;132046;132047;132048;132049;132050;132051;132052;132053;132054;132055;132056;132057;132058;132059 81332;81333;81334;81335;81336;81337;81338;81339;81340;81341;81342;81343;81344;81345;81346;81347;81348;81349;81350 81333 19 GELVVLGR Unmodified 841.50215 0.50215205 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.561 26.414 2 0.00062486 11494 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 130.05 76.341 806260000 129980000 142990000 132730000 0 0 0 30589000 30303000 29599000 0 0 0 36512000 34379000 32727000 0 0 0 79335000 60322000 66794000 0 0 0 7100 34 6925 132060;132061;132062;132063;132064;132065;132066;132067;132068;132069;132070;132071 81351;81352;81353;81354;81355;81356;81357 81357 5 GEMNFDVVIASPDAMR Unmodified 1750.8018 0.80184082 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.495 46.245 2 2.3441E-18 22687 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187.62 181.65 165570000 23952000 21216000 15991000 1606000 0 0 9202700 7351700 6457900 2605900 0 0 11595000 9773400 9569700 1705400 1162400 1745900 13253000 11677000 13220000 1549700 1935000 0 7101 353 6926 132072;132073;132074;132075;132076;132077;132078;132079;132080;132081;132082;132083;132084;132085;132086;132087;132088;132089;132090 81358;81359;81360;81361;81362;81363;81364;81365;81366;81367;81368;81369 81364 12 GEMPETLLEIMQK Unmodified 1517.747 0.74695171 584 P0AAB8 uspD Universal stress protein D yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 51.781 50.404 2 0.00039459 20173 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 81.865 73.795 14382000 0 0 0 2328200 2806400 2559400 0 0 0 0 2405500 2707000 0 0 0 0 0 0 0 0 0 725740 849770 0 7102 584 6927 132091;132092;132093;132094;132095;132096;132097 81370 81370 1 GEMPQTIGGGIGQSR Unmodified 1486.7198 0.71982575 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 2 25.003 23.928 2;3 7.5101E-15 10401 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.71 176.75 2046500000 196200000 210970000 199610000 2776500 3152100 3571000 369620000 364270000 364910000 5809700 6176500 6673600 53075000 47209000 49462000 0 0 0 57921000 53171000 51902000 0 0 0 7103 64 6928 132098;132099;132100;132101;132102;132103;132104;132105;132106;132107;132108;132109;132110;132111;132112;132113;132114;132115;132116;132117;132118;132119;132120;132121;132122;132123;132124;132125;132126;132127;132128 81371;81372;81373;81374;81375;81376;81377;81378;81379;81380;81381;81382;81383;81384;81385;81386;81387;81388 81387 18 GEMPSDFDAK Unmodified 1095.4543 0.45427516 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.282 20.697 2 0.0012005 7795 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.136 86.136 2821300000 149200000 136190000 127070000 0 0 0 276510000 280390000 267870000 0 0 0 252280000 224220000 272410000 0 0 0 278110000 283720000 273370000 0 0 0 7104 1299 6929 132129;132130;132131;132132;132133;132134;132135;132136;132137;132138;132139;132140 81389;81390;81391;81392;81393;81394;81395;81396;81397;81398;81399;81400 81398 12 GENEAAFAAR Unmodified 1034.4781 0.47812214 103 P04995 sbcB Exodeoxyribonuclease I yes yes 0 0 0 By MS/MS 1 14.427 15.083 2 0.11119 4964 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 47.869 39.929 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7105 103 6930 132141 81401 81401 1 GENLYHQEVLTLK Unmodified 1542.8042 0.80420731 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 26.945 25.749 2 8.7848E-06 11646 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 139.89 111.16 50497000 0 1994400 0 0 0 0 4744100 4985100 5623300 0 0 0 4534900 4843900 5343700 0 0 0 6041800 7306900 5078600 0 0 0 7106 193 6931 132142;132143;132144;132145;132146;132147;132148;132149;132150;132151 81402;81403;81404 81403 3 GENYDGTTGSFADLLR Unmodified 1714.7798 0.77984305 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.284 43.895 2 1.2466E-13 16790 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 169.89 164.79 565210000 42601000 44960000 39167000 3560600 3889400 1786600 40266000 36396000 35151000 11143000 11991000 8241200 35018000 34732000 38636000 7119700 6083300 5835100 59265000 53513000 38296000 3613300 3946400 0 7107 862 6932 132152;132153;132154;132155;132156;132157;132158;132159;132160;132161;132162;132163;132164;132165;132166;132167;132168;132169;132170;132171;132172;132173;132174 81405;81406;81407;81408;81409;81410;81411 81405 6 GEPGHPDAEAR Unmodified 1134.5054 0.50539953 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 1 2 2 2 2 10.27 11.079 2;3 0.00010338 2462 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.21 119.21 2572300000 829410000 820950000 710510000 0 0 0 1380300 0 6465600 0 0 0 81145000 64189000 58213000 0 0 0 0 0 0 0 0 0 7108 852 6933 132175;132176;132177;132178;132179;132180;132181;132182;132183;132184;132185;132186;132187;132188;132189;132190 81412;81413;81414;81415;81416;81417;81418 81413 6 GEPIDAQTLQAEESAR Unmodified 1713.817 0.81695684 1367 P31441 ade Adenine deaminase yes yes 0 0 0 By MS/MS 1 28.169 26.465 2 3.1402E-07 12453 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.69 108.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7109 1367 6934 132191 81419 81419 1 GEPLPLLSQVAER Unmodified 1407.7722 0.7721789 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 43.245 41.723 2;3 2.1343E-06 19368 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.68 124.11 1610300000 35865000 32501000 27855000 0 0 0 111690000 111520000 99739000 0 0 0 128010000 123990000 118860000 0 0 0 270810000 272770000 276710000 0 0 0 7110 1065 6935 132192;132193;132194;132195;132196;132197;132198;132199;132200;132201;132202;132203;132204;132205;132206;132207;132208;132209;132210;132211;132212;132213;132214 81420;81421;81422;81423;81424;81425;81426;81427;81428;81429;81430;81431;81432;81433;81434;81435 81435 16 GEPLSFR Unmodified 804.413 0.41300269 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.415 21.682 2 0.0021324 8999 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.7 94.963 2832200000 148770000 178890000 132400000 1118700 1452100 1870400 318760000 313060000 297990000 0 0 0 184400000 169050000 145720000 0 0 0 314060000 328160000 291920000 0 2142200 2439500 7111 1572 6936 132215;132216;132217;132218;132219;132220;132221;132222;132223;132224;132225;132226;132227;132228;132229;132230;132231 81436;81437;81438;81439;81440;81441;81442;81443;81444;81445;81446;81447 81436 12 GEPQINFDDIELDDTDDRRPTR Unmodified 2616.2052 0.20520135 1072 P11557 damX Cell division protein DamX yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.459 33.798 4 1.6383E-06 16510 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.316 90.308 304030000 15847000 12394000 14693000 2794000 2589400 3242600 26356000 23784000 28190000 8109600 7121500 8344600 17373000 15524000 21560000 0 0 1971300 20008000 29742000 31559000 5373700 3648200 3799800 7112 1072 6937 132232;132233;132234;132235;132236;132237;132238;132239;132240;132241;132242;132243;132244;132245;132246;132247;132248;132249;132250;132251;132252;132253 81448;81449;81450;81451;81452;81453;81454;81455 81451 8 GEPRPLTESDWK Unmodified 1413.6888 0.6888432 90 P04425 gshB Glutathione synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 19.35 19.846 2;3 3.8785E-05 7583 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.77 95.149 331690000 35950000 22524000 28505000 0 0 0 30772000 36053000 27660000 0 0 0 21153000 23114000 17762000 0 0 0 24017000 34148000 30034000 0 0 0 7113 90 6938 132254;132255;132256;132257;132258;132259;132260;132261;132262;132263;132264;132265;132266;132267;132268;132269;132270;132271;132272;132273;132274;132275;132276;132277 81456;81457;81458;81459;81460;81461;81462;81463;81464;81465;81466;81467;81468;81469 81462 12 GEQFLINHK Unmodified 1084.5665 0.56654322 120 P05804 uidA Beta-glucuronidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.926 11.394 3 0.16336 2660 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 11.164 1.8299 160830000 0 0 0 0 0 0 8265000 8538200 6751100 9224500 0 7196700 29726000 3673400 0 7248800 14162000 13749000 0 52296000 0 0 0 0 7114 120 6939 132278;132279;132280;132281;132282;132283;132284;132285;132286;132287;132288 81470 81470 1 GEQHGSSSGSSSSYGQHGSGSR Unmodified 2121.8696 0.86961413 23 CON__Q86YZ3 yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 10.152 10.308 3 0.045504 1819 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 37.373 35.839 24490000 0 0 0 0 0 0 0 0 0 10316000 6548300 7625800 0 0 0 0 0 0 0 0 0 0 0 0 + 7115 23 6940 132289;132290;132291 81471;81472 81471 2 GEQQAMQVATR Unmodified 1217.5823 0.58226964 322 P0A7A2 gpmB Probable phosphoglycerate mutase GpmB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.688 14.554 2 9.7393E-08 4621 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 173.37 169.98 330660000 32374000 32384000 28120000 0 0 0 24877000 25581000 25531000 0 0 0 22806000 22846000 26119000 0 0 0 32410000 28279000 29336000 0 0 0 7116 322 6941 132292;132293;132294;132295;132296;132297;132298;132299;132300;132301;132302;132303 81473;81474;81475;81476;81477;81478;81479;81480 81474 8 GEQVIAWVR Unmodified 1056.5716 0.5716286 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 33.194 31.504 2 0.00022858 15338 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.08 113.67 86256000 0 1978500 0 0 0 0 27416000 27505000 29356000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7117 1465 6942 132304;132305;132306;132307;132308 81481;81482;81483;81484 81481 4 GEQVLAYPGTTLYSLEK Unmodified 1867.9567 0.95674479 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 44.65 42.966 2;3 5.5787E-09 21310 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.9 120.16 353530000 15724000 13178000 13216000 3232100 2300500 4104100 35003000 33347000 26584000 38520000 32920000 36133000 11247000 10611000 0 0 3392500 3476600 16444000 16138000 18446000 5413500 6142700 7960100 7118 122 6943 132309;132310;132311;132312;132313;132314;132315;132316;132317;132318;132319;132320;132321;132322;132323;132324;132325;132326;132327;132328;132329;132330;132331;132332;132333;132334;132335;132336 81485;81486;81487;81488;81489;81490;81491;81492;81493;81494;81495;81496;81497;81498;81499;81500 81493 16 GEQVVNIGSQDMNDNVWLTLAK Unmodified 2430.1849 0.1849236 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 1 2 52.114 50.855 2;3 4.4616E-22 25161 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 227.67 222.3 2165800000 0 0 11787000 0 0 0 336570000 306950000 287040000 0 0 0 291640000 266150000 274260000 0 0 0 163860000 64691000 162830000 0 0 0 7119 40 6944 132337;132338;132339;132340;132341;132342;132343;132344;132345;132346;132347;132348;132349;132350;132351;132352;132353;132354 81501;81502;81503;81504;81505;81506;81507;81508;81509;81510;81511;81512;81513;81514;81515 81501 15 GEREPVTEAER Unmodified 1271.6106 0.61059288 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 10.994 11.654 2;3 2.0612E-10 2877 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 196.88 172.03 3482700000 218280000 199560000 197800000 0 0 0 278760000 268200000 252140000 0 0 0 327210000 303610000 286100000 19935000 10841000 23330000 343830000 361440000 391670000 0 0 0 7120 793 6945 132355;132356;132357;132358;132359;132360;132361;132362;132363;132364;132365;132366;132367;132368;132369;132370;132371;132372;132373;132374;132375;132376;132377;132378;132379;132380;132381 81516;81517;81518;81519;81520;81521;81522;81523;81524;81525;81526;81527;81528;81529;81530;81531;81532;81533;81534;81535;81536;81537;81538;81539;81540 81520 25 GERPFVLGPTHEEVITDLIR Unmodified 2277.2117 0.2117307 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 3 3 3 1 3 3 3 3 3 3 1 41.729 39.998 2;3;4 2.0776E-45 19563 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 264.16 262.64 6908600000 599400000 529050000 437470000 0 0 0 579060000 574140000 500460000 0 1868700 0 553340000 575740000 557900000 0 0 0 586330000 729680000 682560000 0 1592500 0 7121 1120 6946 132382;132383;132384;132385;132386;132387;132388;132389;132390;132391;132392;132393;132394;132395;132396;132397;132398;132399;132400;132401;132402;132403;132404;132405;132406;132407;132408;132409;132410;132411;132412;132413;132414;132415;132416;132417;132418;132419 81541;81542;81543;81544;81545;81546;81547;81548;81549;81550;81551;81552;81553;81554;81555;81556;81557;81558;81559;81560;81561;81562;81563;81564;81565;81566;81567;81568;81569 81549 29 GESAPTTAFGAAVVGGDNGR Unmodified 1832.8653 0.86530402 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 32.512 30.54 2 8.8759E-10 11964 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 113.72 98.848 17014000 0 0 0 0 0 0 0 0 0 3523900 1924700 1730000 0 0 0 0 0 0 4003700 0 5831400 0 0 0 7122 1940 6947 132420;132421;132422;132423;132424 81570;81571 81570 1 GESDLVLSYTTSPAYHILEEK Unmodified 2351.1533 0.15327234 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.368 45.978 3 2.2852E-05 22875 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.932 84.75 197450000 5390500 5181700 5826000 0 0 0 18398000 16402000 18094000 0 0 0 14019000 14280000 14348000 0 0 0 29689000 26561000 29261000 0 0 0 7123 1371 6948 132425;132426;132427;132428;132429;132430;132431;132432;132433;132434;132435;132436 81572;81573;81574;81575;81576 81572 3 GESNILLER Unmodified 1029.5455 0.54547343 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.255 23.349 2 6.1598E-05 10185 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.03 88.853 973060000 36202000 34249000 36359000 23564000 23213000 23917000 33258000 34957000 32916000 36041000 34925000 33757000 29212000 27175000 21019000 13014000 13082000 12212000 82919000 93403000 86293000 70900000 70390000 70083000 7124 215 6949 132437;132438;132439;132440;132441;132442;132443;132444;132445;132446;132447;132448;132449;132450;132451;132452;132453;132454;132455;132456;132457;132458;132459;132460 81577;81578;81579;81580;81581;81582;81583;81584;81585;81586;81587;81588;81589;81590;81591;81592;81593;81594 81587 18 GESPVIR Unmodified 756.413 0.41300269 959 P0AFP6 ybgI Putative GTP cyclohydrolase 1 type 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.347 13.243 2 0.0037308 3791 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 106.76 71.655 1289000000 198210000 168960000 230900000 1980700 2428500 2218400 0 134150000 125920000 0 0 0 71231000 72725000 61688000 0 0 0 79132000 77164000 62305000 0 0 0 7125 959 6950 132461;132462;132463;132464;132465;132466;132467;132468;132469;132470;132471;132472;132473;132474 81595;81596 81595 2 GESSLFSR Unmodified 881.4243 0.42429566 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.796 20.017 2 0.00043484 6532 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 139.28 104.17 2536100000 48382000 48510000 38377000 932020 0 0 37382000 47144000 41192000 133010000 109260000 98250000 50896000 51481000 40754000 520650000 386390000 427790000 0 62240000 47521000 106700000 119530000 119740000 7126 463 6951 132475;132476;132477;132478;132479;132480;132481;132482;132483;132484;132485;132486;132487;132488;132489;132490;132491;132492;132493;132494;132495 81597;81598;81599;81600;81601;81602;81603;81604;81605;81606;81607;81608;81609;81610;81611;81612;81613;81614 81600 18 GESTEALLPNMVATSLAK Unmodified 1830.9397 0.93971451 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 47.796 46.322 2;3 2.1786E-13 22913 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 135.94 132.81 1972800000 197560000 193170000 161020000 0 0 0 161090000 167840000 147230000 4535200 5801800 5221500 147260000 141730000 125780000 0 0 0 170050000 154190000 190340000 0 0 0 7127 62 6952 132496;132497;132498;132499;132500;132501;132502;132503;132504;132505;132506;132507;132508;132509;132510;132511;132512;132513;132514;132515;132516;132517;132518;132519;132520;132521;132522 81615;81616;81617;81618;81619;81620;81621;81622;81623;81624;81625;81626;81627;81628;81629;81630;81631;81632;81633 81617 19 GETADFTSVSDK Unmodified 1255.5568 0.55682598 1953 Q46808 yqeB Uncharacterized protein YqeB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 19.419 19.476 2 9.3779E-05 5887 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 96.015 91.599 10245000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3867600 3121600 3255800 7128 1953 6953 132523;132524;132525 81634;81635;81636 81636 3 GETAMTINGPWAWSNIDTSK Unmodified 2178.0052 0.0051683175 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 50.671 49.309 2;3 8.0255E-38 24293 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 244.15 242.45 1789700000 35365000 24821000 21696000 0 0 0 161530000 151790000 154750000 0 0 0 194640000 191160000 175750000 0 0 0 229490000 233100000 215600000 0 0 0 7129 895 6954 132526;132527;132528;132529;132530;132531;132532;132533;132534;132535;132536;132537;132538;132539;132540;132541;132542;132543;132544;132545;132546;132547 81637;81638;81639;81640;81641;81642;81643;81644;81645;81646;81647;81648;81649;81650;81651 81639 14 GETASFDIEANGK Unmodified 1337.6099 0.60992418 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 1 1 1 24.326 23.659 2 6.5214E-09 7213 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 197.06 197.06 720290000 0 6241200 2797600 0 530540 500340 0 0 0 61848000 42353000 47921000 0 0 0 142210000 97637000 87851000 0 0 0 81936000 74118000 74350000 7130 463 6955 132548;132549;132550;132551;132552;132553;132554;132555;132556;132557;132558;132559;132560;132561;132562;132563 81652;81653;81654;81655;81656;81657;81658;81659;81660;81661;81662;81663;81664;81665;81666;81667;81668;81669;81670 81659 16 GETATRPQDEITVQMAER Unmodified 2030.9691 0.96911716 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 1 1 1 1 1 1 24.001 23.047 2;3 8.8004E-31 10368 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 190.55 172.5 409110000 21615000 16516000 99745000 0 0 1034300 72397000 62464000 65110000 0 0 0 8702200 8420300 9350700 0 0 0 16161000 13866000 13724000 0 0 0 7131 1348 6956 132564;132565;132566;132567;132568;132569;132570;132571;132572;132573;132574;132575;132576;132577;132578;132579;132580;132581 81671;81672;81673;81674;81675;81676;81677;81678;81679;81680;81681;81682;81683;81684;81685;81686 81673 16 GETCPNELV Unmodified 1017.4437 0.44371047 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.552 26.404 2 0.0049998 12345 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 76.035 71.718 305470000 27978000 23426000 24625000 0 0 0 36821000 37051000 36790000 0 0 0 18265000 21752000 17262000 0 0 0 19895000 23309000 18296000 0 0 0 7132 1608 6957 132582;132583;132584;132585;132586;132587;132588;132589;132590;132591;132592;132593 81687;81688;81689 81687 3 GETDELAALVAQQR Unmodified 1499.758 0.7579854 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 1 1 2 1 1 2 2 2 2 2 1 1 1 1 2 2 2 1 41.454 39.56 2;3 1.3907E-24 19549 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 242.59 226.06 357160000 10150000 4295100 4759800 3567300 2156300 1932600 51436000 49285000 19851000 15850000 14598000 5080500 9609000 10695000 8980500 0 0 0 64165000 58472000 17177000 5103300 0 0 7133 819 6958 132594;132595;132596;132597;132598;132599;132600;132601;132602;132603;132604;132605;132606;132607;132608;132609;132610;132611;132612;132613;132614;132615;132616;132617;132618;132619;132620;132621;132622 81690;81691;81692;81693;81694;81695;81696 81694 7 GETFADGHGQLLNTNR Unmodified 1728.818 0.81795989 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 1 21.556 21.676 2;3 5.7692E-24 8225 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 215.14 212.05 310400000 8905300 8760400 0 309700 394810 320340 29284000 34208000 35976000 1714200 776690 0 23185000 21003000 19652000 0 0 0 34614000 45082000 39533000 2462300 2405000 1811000 7134 205 6959 132623;132624;132625;132626;132627;132628;132629;132630;132631;132632;132633;132634;132635;132636;132637;132638;132639;132640;132641;132642;132643;132644;132645;132646;132647;132648;132649;132650 81697;81698;81699;81700;81701;81702;81703;81704;81705;81706;81707;81708;81709;81710;81711;81712 81711 16 GETIDIDGYQFK Unmodified 1384.6511 0.65106071 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.036 38.186 2 8.5575E-07 18566 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.28 148.23 708450000 83129000 83800000 72724000 4388000 4594200 4014700 60808000 54134000 57975000 1170400 1269900 842440 40656000 36134000 36385000 0 0 0 51970000 55077000 58545000 829990 0 0 7135 839 6960 132651;132652;132653;132654;132655;132656;132657;132658;132659;132660;132661;132662;132663;132664;132665;132666;132667;132668;132669 81713;81714;81715;81716;81717;81718;81719;81720;81721;81722;81723;81724 81720 7 GETPFEINSR Unmodified 1148.5462 0.54620171 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 25.709 24.533 2 9.7114E-05 8597 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 130.75 126.06 876710000 24480000 21774000 24686000 6461100 6497100 7136700 66760000 74542000 77502000 76086000 81930000 71350000 43660000 42479000 39387000 0 4962000 0 54945000 51700000 52250000 17476000 14740000 15908000 7136 1944 6961 132670;132671;132672;132673;132674;132675;132676;132677;132678;132679;132680;132681;132682;132683;132684;132685;132686;132687;132688;132689;132690;132691;132692;132693 81725;81726;81727;81728;81729;81730;81731;81732;81733;81734;81735;81736;81737;81738;81739;81740;81741;81742;81743 81734 18 GETQALVTATLGTAR Unmodified 1487.7944 0.79437091 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 33.769 32.135 2;3 4.5832E-20 15667 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 208.27 198.26 3190000000 177940000 151810000 138280000 16450000 18097000 15319000 278010000 229590000 258680000 13691000 11469000 12196000 288920000 282360000 260610000 2488100 0 0 319970000 356440000 330640000 9483200 8159000 9451800 7137 107 6962 132694;132695;132696;132697;132698;132699;132700;132701;132702;132703;132704;132705;132706;132707;132708;132709;132710;132711;132712;132713;132714;132715;132716;132717;132718;132719;132720;132721;132722;132723;132724;132725;132726;132727;132728;132729;132730;132731;132732;132733;132734;132735;132736 81744;81745;81746;81747;81748;81749;81750;81751;81752;81753;81754;81755;81756;81757;81758;81759;81760;81761;81762;81763;81764;81765;81766;81767;81768;81769;81770;81771;81772;81773;81774;81775;81776;81777;81778;81779;81780 81749 36 GETQINDQLTGYGR Unmodified 1550.7325 0.73249893 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.261 24.094 2 0.15327 8691 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 38.58 36.985 203640000 0 0 0 0 0 0 12594000 12227000 9106000 0 9898400 11468000 13157000 9052000 8517700 0 0 0 36474000 34126000 27156000 6898500 5731100 7235600 7138 75 6963 132737;132738;132739;132740;132741;132742;132743;132744;132745;132746;132747;132748;132749;132750 81781 81781 0 GETQLTPEEK Unmodified 1130.5455 0.54553301 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 3 3 2 1 1 1 1 3 1 13.36 13.808 2;3 1.0532E-06 3420 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 169.09 163.31 30167000000 232500000 222050000 225520000 20165000 18345000 17914000 172010000 198740000 184560000 1320700000 1629200000 2031300000 246870000 211200000 205620000 4771100000 5501000000 5821900000 262040000 270350000 281160000 1944000000 2183500000 2195100000 7139 463 6964 132751;132752;132753;132754;132755;132756;132757;132758;132759;132760;132761;132762;132763;132764;132765;132766;132767;132768;132769;132770;132771;132772;132773;132774;132775;132776;132777;132778;132779;132780;132781;132782;132783;132784 81782;81783;81784;81785;81786;81787;81788;81789;81790;81791;81792;81793;81794;81795;81796;81797;81798;81799;81800;81801;81802;81803;81804;81805;81806;81807;81808;81809;81810;81811;81812;81813 81793 32 GETVGAQLTGDDR Unmodified 1317.6161 0.61607219 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 18.543 18.962 2 2.1254E-17 7128 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 209.97 202.33 442300000 22070000 23070000 20619000 3405400 3820300 4090700 9874200 12205000 12715000 10110000 7961200 6850600 27717000 24220000 22571000 0 0 0 66810000 65416000 65696000 11179000 10352000 11551000 7140 215 6965 132785;132786;132787;132788;132789;132790;132791;132792;132793;132794;132795;132796;132797;132798;132799;132800;132801;132802;132803;132804;132805;132806 81814;81815;81816;81817;81818;81819;81820;81821;81822;81823;81824;81825;81826;81827;81828;81829;81830;81831;81832;81833;81834 81825 21 GETVGQELAGNPK Unmodified 1298.6466 0.64664404 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.59 18.12 2 2.9097E-07 6621 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.78 186.78 5749100000 1124800000 1249300000 1212200000 3038600 2881800 2703500 204460000 216580000 200760000 984170 864180 0 155680000 159030000 155830000 694800 0 0 345000000 370290000 341000000 1524900 1549100 0 7141 1264 6966 132807;132808;132809;132810;132811;132812;132813;132814;132815;132816;132817;132818;132819;132820;132821;132822;132823;132824;132825;132826;132827;132828 81835;81836;81837;81838;81839;81840;81841;81842;81843;81844;81845;81846;81847 81838 13 GEVADAVSGMLTELQER Unmodified 1803.8673 0.86727785 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.032 51.608 2;3 3.0127E-31 24218 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 296.28 287.27 3136800000 217510000 204090000 180450000 0 0 0 237640000 198840000 227490000 0 0 0 314130000 305550000 292490000 0 0 0 294340000 318060000 346180000 0 0 0 7142 57 6967 132829;132830;132831;132832;132833;132834;132835;132836;132837;132838;132839;132840;132841;132842;132843;132844;132845;132846;132847;132848;132849;132850;132851;132852 81848;81849;81850;81851;81852;81853;81854;81855;81856;81857;81858;81859;81860;81861;81862;81863;81864;81865;81866;81867;81868;81869;81870;81871 81870 24 GEVALENTHPFTR Unmodified 1469.7263 0.72629134 1973 Q47147 yafJ Putative glutamine amidotransferase YafJ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.844 21.925 3 1.4618E-05 8858 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.467 85.746 126820000 17825000 20087000 19597000 322000 0 0 9988800 12617000 0 0 0 0 5411000 6258300 6219100 0 0 0 8838200 11149000 8506500 0 0 0 7143 1973 6968 132853;132854;132855;132856;132857;132858;132859;132860;132861;132862;132863;132864 81872;81873;81874 81874 3 GEVDALR Unmodified 758.39227 0.39226725 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 2 1 1 2 1 1 1 2 14.063 14.923 2 0.0021324 4725 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 117.7 48.267 1072400000 80967000 66738000 86863000 0 0 0 0 153390000 138100000 0 0 0 96820000 83765000 89725000 0 0 0 85786000 89916000 100340000 0 0 0 7144 1868 6969 132865;132866;132867;132868;132869;132870;132871;132872;132873;132874;132875;132876;132877;132878;132879 81875;81876;81877;81878 81876 2 GEVDDIDHLGNR Unmodified 1338.6164 0.61640654 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 20.223 20.358 2;3 8.6992E-19 5849 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 225.66 225.66 3657300000 243340000 226820000 176510000 0 0 0 154240000 157400000 174940000 146920000 129770000 123500000 142980000 192750000 116920000 233810000 212280000 237320000 210130000 199500000 222170000 125820000 122980000 107210000 7145 463 6970 132880;132881;132882;132883;132884;132885;132886;132887;132888;132889;132890;132891;132892;132893;132894;132895;132896;132897;132898;132899;132900;132901;132902;132903;132904;132905;132906;132907;132908;132909;132910;132911;132912;132913;132914;132915;132916;132917;132918;132919 81879;81880;81881;81882;81883;81884;81885;81886;81887;81888;81889;81890;81891;81892;81893;81894;81895;81896;81897;81898;81899;81900;81901;81902;81903;81904;81905;81906;81907;81908;81909;81910;81911;81912;81913;81914;81915;81916;81917;81918;81919 81884 40 GEVDDIDHLGNRR Unmodified 1494.7175 0.71751757 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 15.812 16.341 2;3;4 4.0849E-31 4628 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 254.24 234.48 7349200000 130690000 126890000 109890000 2585900 2800800 2404100 110350000 98270000 93731000 123920000 133370000 369480000 115790000 108580000 88555000 1282400000 1146100000 1163200000 146630000 120030000 115900000 605580000 544730000 607290000 7146 463 6971 132920;132921;132922;132923;132924;132925;132926;132927;132928;132929;132930;132931;132932;132933;132934;132935;132936;132937;132938;132939;132940;132941;132942;132943;132944;132945;132946;132947;132948;132949;132950;132951;132952;132953;132954;132955;132956;132957;132958;132959;132960;132961;132962;132963;132964;132965;132966;132967;132968;132969;132970;132971;132972;132973;132974;132975;132976;132977;132978;132979;132980;132981;132982;132983;132984;132985;132986;132987;132988;132989;132990 81920;81921;81922;81923;81924;81925;81926;81927;81928;81929;81930;81931;81932;81933;81934;81935;81936;81937;81938;81939;81940;81941;81942;81943;81944;81945;81946;81947;81948;81949;81950;81951;81952;81953;81954;81955;81956;81957;81958;81959;81960 81929 41 GEVETIALEQLVGR Unmodified 1512.8148 0.814772 1602 P52095 ldcC Lysine decarboxylase, constitutive yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 48.087 46.641 2 5.0713E-06 23107 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 137.89 123.2 40396000 7590700 6135100 7203400 0 0 0 4479300 7003000 3947700 0 0 0 2445400 0 1591000 0 0 0 0 0 0 0 0 0 7147 1602 6972 132991;132992;132993;132994;132995;132996;132997;132998 81961;81962 81961 2 GEVFLPQAGFEK Unmodified 1320.6714 0.67140222 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.03 35.559 2 7.9102E-05 17235 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 99.973 97.763 311330000 0 0 22300000 517050 0 0 34083000 26864000 33084000 0 991800 532450 24433000 0 25234000 10832000 4340300 4918300 44155000 41371000 37669000 0 0 0 7148 1102 6973 132999;133000;133001;133002;133003;133004;133005;133006;133007;133008;133009;133010;133011;133012;133013 81963;81964;81965;81966;81967;81968;81969 81966 7 GEVLAVGNGR Unmodified 970.51959 0.51959303 241 P0A6F9 groS 10 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 16.922 17.475 2 0.00015316 6375 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.58 107.21 635980000 0 0 0 0 0 0 214160000 212210000 209610000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7149 241 6974 133014;133015;133016;133017 81970;81971;81972;81973 81970 4 GEVLDIVAEPR Unmodified 1196.6401 0.6401021 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 34.945 33.477 2 5.2515E-06 15424 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 152.28 152.28 863340000 96049000 95817000 76239000 713770 0 0 60746000 64815000 54841000 0 0 0 54135000 46895000 54641000 0 0 0 88590000 86681000 83179000 0 0 0 7150 1348 6975 133018;133019;133020;133021;133022;133023;133024;133025;133026;133027;133028;133029;133030 81974;81975;81976;81977;81978;81979;81980;81981;81982;81983;81984 81982 9 GEVLENLIPEAFAVVR Unmodified 1754.9567 0.95668521 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 54.998 53.733 2;3 1.0593E-13 21794 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 208.95 205.42 1408400000 52976000 55872000 46586000 8115000 8770300 9574300 66091000 59506000 51065000 80080000 74971000 77918000 45098000 45443000 48245000 92723000 126930000 126930000 58999000 70457000 65331000 53050000 45896000 37737000 7151 1057 6976 133031;133032;133033;133034;133035;133036;133037;133038;133039;133040;133041;133042;133043;133044;133045;133046;133047;133048;133049;133050;133051;133052;133053;133054;133055;133056;133057;133058;133059;133060;133061;133062;133063;133064;133065;133066;133067;133068;133069;133070;133071;133072;133073;133074;133075;133076;133077;133078 81985;81986;81987;81988;81989;81990;81991;81992;81993;81994;81995;81996;81997;81998 81990 14 GEVNLVK Unmodified 757.4334 0.43340378 892 P0AEW9 fruK 1-phosphofructokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.51 15.185 2 0.025077 5091 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.021 39.092 375570000 30545000 26614000 24190000 0 0 0 32622000 31528000 24457000 0 3115100 860240 27866000 26224000 25031000 0 0 0 43039000 41164000 38318000 0 0 0 7152 892 6977 133079;133080;133081;133082;133083;133084;133085;133086;133087;133088;133089;133090;133091;133092 81999;82000;82001;82002 82000 4 GEVVASTFDEPASR Unmodified 1463.6892 0.68923713 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.652 23.568 2 1.6265E-11 10482 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 176.95 171.41 1067900000 170110000 170380000 151110000 6829300 5316800 6208500 62760000 61711000 58096000 45725000 41735000 37404000 34671000 31844000 31195000 0 0 0 45427000 51607000 45259000 4010800 3244900 3245500 7153 982 6978 133093;133094;133095;133096;133097;133098;133099;133100;133101;133102;133103;133104;133105;133106;133107;133108;133109;133110;133111;133112;133113 82003;82004;82005;82006;82007;82008;82009;82010;82011;82012;82013;82014;82015;82016;82017;82018;82019;82020 82009 18 GEVVGAVSIQHQALPSCLVDK Unmodified 2206.1416 0.14160222 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 34.182 33.449 3 3.3673E-10 11154 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 113.99 111.65 33565000 0 3902200 2476900 0 0 0 3224600 0 0 0 0 0 0 0 0 9281000 7819000 6861200 0 0 0 0 0 0 7154 456 6979 133114;133115;133116;133117;133118;133119 82021;82022;82023 82022 3 GEVVLGDEFSPDGSR Unmodified 1562.7213 0.72126554 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.91 33.427 2 9.7177E-12 15907 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.92 170.98 1155300000 263810000 250590000 213320000 1905200 2320200 2549500 56919000 51459000 47122000 0 0 0 37690000 30339000 33277000 0 0 0 55973000 54935000 53099000 0 0 0 7155 334 6980 133120;133121;133122;133123;133124;133125;133126;133127;133128;133129;133130;133131;133132;133133;133134 82024;82025;82026;82027;82028;82029;82030;82031;82032;82033;82034;82035;82036 82032 13 GEVVLVGAGPGDAGLLTLK Unmodified 1764.9986 0.99855002 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 49.711 48.309 2 3.9015E-07 22561 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 108.71 105.68 166060000 23350000 17252000 15717000 0 0 0 15278000 13641000 13928000 0 0 0 11062000 9880300 9768200 0 0 0 11898000 11465000 12819000 0 0 0 7156 843 6981 133135;133136;133137;133138;133139;133140;133141;133142;133143;133144;133145;133146;133147 82037;82038;82039;82040;82041;82042;82043 82043 7 GEVVNAACAVDAGSVDQTVQLGQVR Unmodified 2542.2446 0.24456374 87 P04128 fimA Type-1 fimbrial protein, A chain yes yes 0 0 0 By MS/MS 1 40.214 37.915 3 0.062531 14985 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 39.883 32.607 3365300 0 0 0 0 0 0 0 0 0 0 0 3365300 0 0 0 0 0 0 0 0 0 0 0 0 7157 87 6982 133148 82044 82044 0 GEVVSHIASDNVLGGK Unmodified 1580.8158 0.81583463 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 2 2 2 22.918 22.382 2;3 1.4552E-24 9557 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 270.93 227.16 10603000000 939580000 965630000 949490000 0 0 0 820930000 623960000 821460000 0 0 0 1019800000 890540000 940260000 0 331170 0 759960000 924230000 946340000 0 0 0 7158 72 6983 133149;133150;133151;133152;133153;133154;133155;133156;133157;133158;133159;133160;133161;133162;133163;133164;133165;133166;133167;133168;133169;133170;133171;133172 82045;82046;82047;82048;82049;82050;82051;82052;82053;82054;82055;82056;82057;82058;82059;82060;82061;82062;82063;82064;82065;82066;82067 82052 23 GEWGSATWEMR Unmodified 1308.5557 0.55572054 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.796 33.468 2 2.7726E-10 15951 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.66 185.98 221680000 40879000 29953000 31814000 0 0 0 0 0 0 0 0 0 0 0 34687000 0 0 0 45316000 39031000 0 0 0 0 7159 1215 6984 133173;133174;133175;133176;133177;133178;133179 82068;82069;82070;82071;82072;82073;82074 82072 7 GEWLLYR Unmodified 935.4865 0.48650199 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.681 35.058 2 0.001213 17373 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.99 123.11 1013800000 107230000 110110000 77232000 0 0 0 81446000 92251000 81744000 0 0 0 60976000 66798000 68761000 0 0 0 94306000 87116000 85786000 0 0 0 7160 62 6985 133180;133181;133182;133183;133184;133185;133186;133187;133188;133189;133190;133191 82075;82076;82077;82078;82079;82080;82081;82082;82083;82084;82085;82086 82075 12 GEYAQDK Unmodified 809.35555 0.35554739 1490 P37745 rfbC dTDP-4-dehydrorhamnose 3,5-epimerase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.6381 6.504 2 0.023476 1250 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.637 59.651 914430000 78061000 60905000 62243000 0 0 0 57900000 77087000 74236000 0 0 0 80823000 70753000 69259000 0 0 0 100160000 96426000 86576000 0 0 0 7161 1490 6986 133192;133193;133194;133195;133196;133197;133198;133199;133200;133201;133202;133203 82087;82088;82089;82090;82091;82092;82093;82094 82089 8 GEYIEAAVNLR Unmodified 1233.6354 0.63535107 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 2 1 1 1 1 32.315 30.756 2 0.00025046 10487 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 98.033 91.729 25782000 3180200 0 0 3320400 4272400 4236500 0 0 0 0 0 1650700 0 0 0 0 0 0 0 3094300 0 0 0 6027900 7162 1383 6987 133204;133205;133206;133207;133208;133209;133210;133211;133212;133213 82095;82096;82097;82098;82099;82100 82099 6 GEYIEAAVNLRR Unmodified 1389.7365 0.7364621 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 24.989 23.937 3 0.00012481 8306 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 82.171 73.572 37059000 0 0 0 5014200 5192300 5334500 0 0 0 4309400 3190900 3576600 0 0 0 0 957590 896120 0 0 0 0 4567700 4019900 7163 1383 6988 133214;133215;133216;133217;133218;133219;133220;133221;133222;133223 82101;82102 82101 2 GEYLPIVELWK Unmodified 1345.7282 0.72818882 160 P07363 cheA Chemotaxis protein CheA yes yes 0 0 0 By matching By MS/MS 1 1 54.266 52.965 2 0.06541 19302 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 46.819 41.878 4353800 0 0 0 1961900 0 2391900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7164 160 6989 133224;133225 82103 82103 0 GEYQYLNPNDHVNK Unmodified 1689.7747 0.7746981 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 18.663 19.143 2;3 5.1313E-20 7172 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 220.5 219.17 5331100000 270610000 294770000 290050000 0 0 0 675150000 643880000 638250000 3077800 0 2977100 564060000 446420000 441760000 0 0 0 376180000 325890000 355180000 2853300 0 0 7165 697 6990 133226;133227;133228;133229;133230;133231;133232;133233;133234;133235;133236;133237;133238;133239;133240;133241;133242;133243;133244;133245;133246;133247;133248;133249;133250;133251;133252 82104;82105;82106;82107;82108;82109;82110;82111;82112;82113;82114;82115;82116;82117;82118;82119;82120;82121;82122;82123;82124;82125 82116 22 GFAGTVK Unmodified 678.37008 0.37007525 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.647 13.239 1 0.034681 3811 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 100.67 58.547 1623900000 239620000 215340000 223440000 0 0 0 66223000 69340000 60008000 0 10280000 0 93905000 95509000 95487000 7415100 5109800 5459600 142870000 137460000 139070000 9731400 0 7653200 7166 1621 6991 133253;133254;133255;133256;133257;133258;133259;133260;133261;133262;133263;133264;133265;133266;133267;133268;133269;133270 82126 82126 0 GFAHGFLVLSDIAEFQYK Unmodified 2041.0309 0.030912783 1490 P37745 rfbC dTDP-4-dehydrorhamnose 3,5-epimerase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.62 51.341 3 1.3549E-06 24862 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 91.657 90.094 288930000 9619200 7918100 10379000 0 0 0 24085000 25511000 31240000 0 0 0 24592000 23408000 18939000 0 0 0 43613000 39674000 29955000 0 0 0 7167 1490 6992 133271;133272;133273;133274;133275;133276;133277;133278;133279;133280;133281;133282 82127;82128;82129;82130;82131;82132;82133 82131 7 GFAPQLPETLPGTDEAPSQAS Unmodified 2112.0011 0.0011287971 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.971 48.651 2 0.040761 22865 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 70.628 59.523 68180000 6392300 5631800 0 0 0 0 0 0 0 0 0 0 8812200 7253100 7516500 0 0 0 10716000 11482000 10376000 0 0 0 7168 1197 6993 133283;133284;133285;133286;133287;133288;133289;133290 82134 82134 1 GFAVTPPELTK Unmodified 1158.6285 0.62847478 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.056 32.586 2 0.00030774 15878 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.696 81.833 7317000000 1032800000 1017700000 925280000 905840 0 974540 550570000 556640000 493910000 0 0 0 401100000 350670000 354450000 0 0 0 525560000 557350000 549070000 0 0 0 7169 1652 6994 133291;133292;133293;133294;133295;133296;133297;133298;133299;133300;133301;133302;133303;133304 82135;82136;82137;82138;82139;82140;82141;82142;82143;82144;82145;82146 82135 12 GFAVVAGEVR Unmodified 1003.5451 0.5450795 151;76;152;1593 P02942;P07017;P07018;P50466 tsr;tar;tap;aer Methyl-accepting chemotaxis protein I;Methyl-accepting chemotaxis protein II;Methyl-accepting chemotaxis protein IV;Aerotaxis receptor no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 26.615 25.523 2 0.00011949 8458 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 128.69 82.968 588040000 104400000 100270000 86044000 97956000 97914000 101460000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7170 76;151;152;1593 6995 133305;133306;133307;133308;133309;133310 82147;82148;82149;82150;82151;82152 82148 6 GFAVVASEVR Unmodified 1033.5556 0.55564418 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 27.066 25.714 2 0.00017054 8560 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 123.98 89.176 33935000 0 0 0 13953000 10961000 9020600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7171 114 6996 133311;133312;133313 82153;82154;82155 82154 3 GFCAGVDR Unmodified 880.38614 0.38613602 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.588 15.296 2 0.0021654 4767 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 102.77 100.2 395620000 31972000 35374000 27682000 0 0 0 34315000 39559000 38288000 0 0 0 24577000 27629000 20562000 0 0 1907100 44175000 35472000 34105000 0 0 0 7172 1650 6997 133314;133315;133316;133317;133318;133319;133320;133321;133322;133323;133324;133325;133326 82156;82157;82158;82159;82160 82160 5 GFDDHSK Unmodified 804.34023 0.34023168 1963 Q46871 yqjH NADPH-dependent ferric-chelate reductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 5.5616 6.4996 2 0.13271 1450 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 47.916 47.916 16036000 0 0 0 0 0 0 0 0 0 0 0 0 3020100 2117800 2293800 0 0 0 2823500 3130900 2649300 0 0 0 7173 1963 6998 133327;133328;133329;133330;133331;133332 82161;82162 82162 1 GFDDSFLAPHSR Unmodified 1347.6208 0.62076364 163 P07623 metA Homoserine O-succinyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 30.316 28.935 3 0.058154 13727 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 28.433 28.433 47866000 4880700 6950000 5169300 0 0 0 7924200 8082200 7887100 0 0 0 2111400 2088500 0 0 0 0 0 0 2772600 0 0 0 7174 163 6999 133333;133334;133335;133336;133337;133338;133339;133340;133341 82163 82163 0 GFDFDGQEALK Unmodified 1225.5615 0.56151742 1077 P12282 moeB Molybdopterin-synthase adenylyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.156 32.708 2 0.0031424 15951 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 66.435 61.449 120800000 13250000 15157000 13849000 0 0 0 9480400 8561200 9371300 0 0 0 8554600 7099800 6186500 0 0 0 7186600 12198000 9905900 0 0 0 7175 1077 7000 133342;133343;133344;133345;133346;133347;133348;133349;133350;133351;133352;133353 82164;82165 82164 1 GFDGSTVFYPLTHNLHQDGILR Unmodified 2486.2343 0.23425705 196 P09029 purK N5-carboxyaminoimidazole ribonucleotide synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 2 2 1 1 1 1 2 2 1 2 46.078 44.672 3;4 9.9263E-06 21977 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.396 85.634 222890000 67145000 59044000 35084000 0 0 0 4451600 0 0 0 0 0 5223500 6808300 9532100 0 0 0 13538000 9787500 12280000 0 0 0 7176 196 7001 133354;133355;133356;133357;133358;133359;133360;133361;133362;133363;133364;133365;133366;133367;133368 82166;82167;82168;82169;82170;82171 82168 5 GFDIFLDLK Unmodified 1066.5699 0.56989727 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.868 52.428 2 0.00013676 25574 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.08 127.35 501800000 72466000 63292000 63845000 0 0 0 10965000 16542000 17601000 0 0 0 45222000 36737000 33488000 0 0 0 51678000 45399000 44569000 0 0 0 7177 181 7002 133369;133370;133371;133372;133373;133374;133375;133376;133377;133378;133379;133380 82172;82173;82174;82175;82176;82177;82178;82179;82180;82181 82178 10 GFDNGPLFK Unmodified 993.49198 0.4919813 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.148 30.808 2 0.00030784 14955 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.17 97.533 320650000 25466000 21429000 22339000 0 0 0 23401000 23272000 25336000 0 0 0 25394000 27763000 26377000 0 0 0 31148000 33890000 34831000 0 0 0 7178 558 7003 133381;133382;133383;133384;133385;133386;133387;133388;133389;133390;133391;133392 82182;82183;82184;82185;82186;82187;82188;82189;82190;82191;82192;82193 82182 12 GFDSGDPAQCNTFGK Unmodified 1599.6624 0.66237045 1668 P64429 ypfJ Uncharacterized protein YpfJ yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.08 23.028 2 2.9091E-07 10341 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130.56 127.61 51555000 6017200 0 3766700 943490 613750 862080 7007600 5328500 7070000 1114400 0 0 0 0 0 0 0 0 6447600 6493900 5889500 0 0 0 7179 1668 7004 133393;133394;133395;133396;133397;133398;133399;133400;133401;133402;133403;133404 82194 82194 1 GFEEICHALADIATTHQDIQIVYPVHLNPNVR Unmodified 3669.8362 0.8361995 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 2 1 1 1 2 1 2 2 52.373 51.137 4;5 3.4929E-25 24753 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 169.91 168.7 511450000 51993000 48768000 41430000 0 0 0 19008000 43980000 20335000 0 0 0 31286000 20318000 41322000 0 0 0 36689000 69610000 86710000 0 0 0 7180 1306 7005 133405;133406;133407;133408;133409;133410;133411;133412;133413;133414;133415;133416;133417;133418;133419;133420;133421;133422;133423 82195;82196 82196 2 GFEELDTSK Unmodified 1024.4713 0.47130543 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.577 20.987 2 0.00028369 8300 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.27 115.82 3677300000 271080000 232430000 217950000 1248600 1068000 0 364610000 349300000 354640000 0 0 0 298910000 321370000 248940000 0 0 0 325670000 346590000 343480000 0 0 0 7181 299 7006 133424;133425;133426;133427;133428;133429;133430;133431;133432;133433;133434;133435;133436;133437 82197;82198;82199;82200;82201;82202;82203 82202 4 GFEGGQMPLYR Unmodified 1253.5863 0.58629239 68 P02413 rplO 50S ribosomal protein L15 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 2 1 31.091 29.699 2;3 1.6902E-10 13819 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 194.29 183.13 5748100000 752800000 691960000 697230000 18861000 18751000 16045000 225540000 218300000 237710000 40141000 34598000 34841000 336050000 325030000 327710000 30956000 28124000 26281000 510950000 527830000 517550000 43758000 43837000 43263000 7182 68 7007 133438;133439;133440;133441;133442;133443;133444;133445;133446;133447;133448;133449;133450;133451;133452;133453;133454;133455;133456;133457;133458;133459;133460;133461;133462;133463;133464;133465;133466;133467 82204;82205;82206;82207;82208;82209;82210;82211;82212;82213;82214;82215;82216;82217;82218;82219;82220;82221;82222;82223;82224;82225;82226;82227;82228;82229;82230;82231 82220 25 GFEMDFAELLLEDYK Oxidation (M) 1834.8335 0.83351811 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 1 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 55.438 53.926 2 8.7456E-07 26896 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.21 115.72 101560000 11864000 12277000 13490000 0 0 0 20384000 22520000 21023000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7183 1755;1756 7008 133468;133469;133470;133471;133472;133473 82232;82233 82232 607 2 GFEMDFAELLLEDYK Unmodified 1818.8386 0.83860349 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 55.77 54.303 2;3 1.1621E-10 27107 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.38 152.99 5100500000 524220000 690610000 698120000 0 0 1647900 1120100000 884690000 886850000 5721000 3311900 0 49977000 38517000 45666000 0 0 0 61635000 38770000 50595000 0 0 0 7184 1755;1756 7008 133474;133475;133476;133477;133478;133479;133480;133481;133482;133483;133484;133485;133486;133487;133488;133489;133490;133491;133492;133493;133494;133495;133496;133497;133498;133499;133500 82234;82235;82236;82237;82238;82239;82240;82241;82242;82243;82244;82245 82241 12 GFEQASPSTVTLAK Unmodified 1434.7355 0.73545904 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.507 25.46 2 1.3538E-05 11400 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.82 124.72 884930000 56114000 61940000 52381000 0 0 0 113600000 109710000 100910000 0 0 0 69285000 63431000 63441000 0 0 0 60901000 71982000 61238000 0 0 0 7185 1588 7009 133501;133502;133503;133504;133505;133506;133507;133508;133509;133510;133511;133512 82246;82247;82248;82249;82250;82251;82252;82253 82248 8 GFEQLMMWVDSK Unmodified 1469.6683 0.66830746 1402 P33012 sbmC DNA gyrase inhibitor yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.738 53.284 2 5.8611E-12 19551 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 194.12 187.58 202900000 12369000 17411000 14370000 21676000 23924000 22020000 13407000 12798000 11451000 13202000 12259000 13322000 0 0 0 0 0 0 0 0 0 5737600 4081600 4869100 7186 1402 7010 133513;133514;133515;133516;133517;133518;133519;133520;133521;133522;133523;133524;133525;133526;133527 82254;82255;82256 82254 3 GFEYSDCWVDDAR Unmodified 1618.6358 0.63582135 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.445 36.566 2 3.073E-12 18110 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 185.29 185.29 1377000000 0 5941600 5142100 1210600 1546000 1508900 181200000 174020000 180430000 124910000 122210000 110580000 58597000 66565000 57841000 0 0 0 74493000 78978000 65300000 23492000 22338000 20739000 7187 1088 7011 133528;133529;133530;133531;133532;133533;133534;133535;133536;133537;133538;133539;133540;133541;133542;133543;133544;133545;133546;133547 82257;82258;82259;82260;82261;82262;82263;82264;82265;82266;82267;82268 82260 10 GFFGCNHFVLANQWLEQR Unmodified 2222.048 0.047976606 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 48.878 47.54 3 7.5677E-46 23523 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 209.66 204.41 365190000 0 27527000 25606000 0 0 0 45667000 43755000 40997000 0 0 0 24904000 23855000 22572000 0 0 0 42182000 33940000 34185000 0 0 0 7188 1078 7012 133548;133549;133550;133551;133552;133553;133554;133555;133556;133557;133558 82269;82270;82271;82272;82273 82269 5 GFFGWFNR Unmodified 1029.4821 0.48208531 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.494 49.06 2 0.00046555 20026 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 137.5 132.03 113150000 0 0 0 0 0 0 10411000 9284300 12470000 9101900 5888500 5537500 10501000 9927200 10811000 0 0 0 1584700 16400000 0 3414000 3695700 4125300 7189 1365 7013 133559;133560;133561;133562;133563;133564;133565;133566;133567;133568;133569;133570;133571;133572 82274;82275;82276;82277;82278;82279 82274 5 GFFLQVEGASIDK Unmodified 1409.7191 0.7190807 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 44.285 42.712 2 8.2476E-06 20793 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 122.69 119.71 618350000 0 0 0 0 0 0 47753000 45385000 43144000 0 0 0 79088000 77812000 71841000 0 0 0 89046000 85267000 79013000 0 0 0 7190 38 7014 133573;133574;133575;133576;133577;133578;133579;133580;133581 82280;82281;82282;82283;82284 82280 5 GFFSLDLYR Unmodified 1116.5604 0.56039521 1981 Q93K97 nudF ADP-ribose pyrophosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.321 48.922 2 0.0001001 24361 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 136.11 124.75 211750000 20928000 18540000 15141000 0 0 0 18816000 21275000 14688000 0 0 0 17012000 15733000 14590000 0 0 0 18144000 18451000 18431000 0 0 0 7191 1981 7015 133582;133583;133584;133585;133586;133587;133588;133589;133590;133591;133592;133593 82285;82286;82287 82285 3 GFFSLLLSQLFHGEPK Unmodified 1818.9669 0.96685596 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 2 2 1 1 2 2 2 2 2 2 55.445 53.986 2;3 4.7402E-12 26788 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 134.08 120.65 561490000 65802000 67465000 69957000 8663100 7303600 6113300 39862000 47441000 43037000 1850600 1890500 0 30303000 22444000 20758000 0 0 0 44321000 41079000 43203000 0 0 0 7192 839 7016 133594;133595;133596;133597;133598;133599;133600;133601;133602;133603;133604;133605;133606;133607;133608;133609;133610;133611;133612;133613;133614;133615;133616;133617;133618;133619;133620;133621 82288;82289;82290;82291;82292;82293;82294;82295;82296;82297;82298 82291 10 GFFSWLGFGQK Unmodified 1272.6291 0.62914348 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.842 53.394 2 9.4444E-06 21544 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 179.21 178.97 195290000 10680000 9433700 9778500 2892100 2365700 2688900 19585000 21726000 21617000 15863000 13658000 10142000 0 15819000 0 0 0 0 20887000 0 0 6468700 6684700 5000300 7193 1052 7017 133622;133623;133624;133625;133626;133627;133628;133629;133630;133631;133632;133633;133634;133635;133636;133637;133638 82299;82300;82301;82302 82300 4 GFFYESFNQSAFEHILGYPVSFVQDNHSR Unmodified 3421.5792 0.57923976 1490 P37745 rfbC dTDP-4-dehydrorhamnose 3,5-epimerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.27 52.822 4 8.6183E-08 24857 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 99.102 94.196 741830000 25537000 23395000 23129000 0 0 0 56650000 46246000 48716000 0 0 0 67838000 59865000 56574000 0 0 0 115470000 109410000 108990000 0 0 0 7194 1490 7018 133639;133640;133641;133642;133643;133644;133645;133646;133647;133648;133649;133650 82303;82304;82305 82305 3 GFGFICPEGGGEDIFAHYSTIQMDGYR Unmodified 3023.3218 0.32182778 494 P0A968 cspD Cold shock-like protein CspD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.56 51.434 3 6.9056E-31 24276 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 184.3 184.3 1150000000 37350000 34491000 29616000 0 0 0 134250000 128120000 124210000 0 0 0 149150000 140280000 136330000 11527000 0 12360000 70127000 72538000 69635000 0 0 0 7195 494 7019 133651;133652;133653;133654;133655;133656;133657;133658;133659;133660;133661;133662;133663;133664 82306;82307;82308;82309;82310;82311;82312;82313;82314;82315;82316;82317;82318;82319 82317 13 GFGFISPVDGSK Unmodified 1209.603 0.60298831 1452 P36995 cspB Cold shock-like protein CspB yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 37.184 35.348 2 0.0013538 17308 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.643 2.8185 107460000 0 0 0 0 0 0 0 55119000 50598000 0 0 0 1742800 0 0 0 0 0 0 0 0 0 0 0 7196 1452 7020 133665;133666;133667 82320;82321 82321 2 GFGFITPADGSK Unmodified 1195.5873 0.58733824 566 P0A9Y6 cspC Cold shock-like protein CspC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 5 4 3 4 3 2 1 1 1 4 3 3 1 34.255 32.83 2;3 1.7945E-05 17206 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 150.35 147.82 60949000000 4265500000 3782000000 3567900000 0 0 0 5676600000 5464400000 5372700000 0 0 0 4434600000 4466700000 4404800000 24713000 14172000 13080000 6629400000 6434600000 6396000000 0 0 1566800 7197 566 7021 133668;133669;133670;133671;133672;133673;133674;133675;133676;133677;133678;133679;133680;133681;133682;133683;133684;133685;133686;133687;133688;133689;133690;133691;133692;133693;133694;133695;133696;133697;133698;133699;133700;133701;133702;133703;133704;133705;133706;133707;133708 82322;82323;82324;82325;82326;82327;82328;82329;82330;82331;82332;82333;82334;82335;82336;82337;82338;82339;82340;82341;82342;82343;82344;82345;82346;82347;82348;82349;82350;82351;82352;82353;82354;82355;82356;82357;82358;82359;82360 82343 36 GFGFITPDDGSK Unmodified 1239.5772 0.57716749 565;496 P0A9X9;P0A978 cspA;cspG Cold shock protein CspA;Cold shock-like protein CspG no no 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 2 1 1 2 2 2 2 2 2 1 37.251 35.528 2 2.3589E-06 17091 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 142.43 137.73 9446300000 288180000 266090000 269830000 2159200 2057500 2028800 1032100000 989660000 918320000 0 0 2241500 661710000 712910000 649020000 0 0 0 1218100000 1204000000 1226300000 1617400 0 0 7198 565;496 7022 133709;133710;133711;133712;133713;133714;133715;133716;133717;133718;133719;133720;133721;133722;133723;133724;133725;133726;133727;133728;133729;133730;133731;133732;133733 82361;82362;82363;82364;82365;82366;82367;82368;82369;82370;82371;82372;82373 82363 13 GFGFITPDDGSKDVFVHFSAIQNDGYK Unmodified 2960.3981 0.3980875 565 P0A9X9 cspA Cold shock protein CspA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 49.15 47.798 4 0.085092 17198 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 30.958 30.95 11396000 0 0 0 2985800 4943500 3466200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7199 565 7023 133734;133735;133736 82374;82375;82376 82374 3 GFGFITPEDGSK Unmodified 1253.5928 0.59281755 495 P0A972 cspE Cold shock-like protein CspE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 3 1 1 1 3 4 3 1 1 1 4 4 4 1 1 1 4 4 5 1 1 1 35.84 34.289 2;3 1.3623E-06 16851 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 148.96 146.03 40070000000 1679300000 1630500000 1450900000 9450200 9731800 9343700 3591800000 3461300000 3455800000 5103300 6810900 4418400 3839100000 3860500000 3882000000 29720000 16764000 13393000 4220900000 4604300000 4269800000 6778200 6037400 6340900 7200 495 7024 133737;133738;133739;133740;133741;133742;133743;133744;133745;133746;133747;133748;133749;133750;133751;133752;133753;133754;133755;133756;133757;133758;133759;133760;133761;133762;133763;133764;133765;133766;133767;133768;133769;133770;133771;133772;133773;133774;133775;133776;133777;133778;133779;133780;133781;133782;133783;133784;133785;133786;133787;133788;133789 82377;82378;82379;82380;82381;82382;82383;82384;82385;82386;82387;82388;82389;82390;82391;82392;82393;82394;82395;82396;82397;82398;82399;82400;82401;82402;82403;82404;82405;82406;82407;82408;82409;82410 82382 26 GFGFLEVDAQK Unmodified 1209.603 0.60298831 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 3 2 2 2 2 2 2 3 2 1 1 39.3 37.599 2 3.2006E-06 19286 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.49 63.832 1100900000 87877000 88455000 79619000 1479200 1268200 1665800 153960000 88979000 76538000 0 0 0 60336000 55476000 55283000 0 0 0 96072000 143370000 107970000 1161000 0 1411900 7201 1348 7025 133790;133791;133792;133793;133794;133795;133796;133797;133798;133799;133800;133801;133802;133803;133804;133805;133806;133807;133808;133809;133810;133811;133812;133813;133814;133815;133816;133817;133818 82411;82412;82413;82414;82415;82416;82417;82418;82419;82420;82421;82422;82423;82424;82425;82426 82418 13 GFGGDTLNTSVYIAR Unmodified 1569.7787 0.77872084 1481 P37647 kdgK 2-dehydro-3-deoxygluconokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.517 35.843 2 0.00028557 17306 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.849 68.996 193690000 23453000 25711000 18421000 0 0 0 15320000 16431000 14947000 0 0 0 11245000 11544000 11140000 0 0 0 13889000 13175000 18415000 0 0 0 7202 1481 7026 133819;133820;133821;133822;133823;133824;133825;133826;133827;133828;133829;133830 82427;82428;82429 82428 3 GFGGEVLLHGANFDEAK Unmodified 1759.8529 0.85294842 98 P04968 ilvA L-threonine dehydratase biosynthetic IlvA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 35.396 33.82 3 1.5759E-06 16085 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.311 84.974 90425000 18908000 12174000 14902000 0 0 0 8926700 9246300 5994800 0 0 0 3877100 0 0 0 0 0 4017200 6852100 5527100 0 0 0 7203 98 7027 133831;133832;133833;133834;133835;133836;133837;133838;133839;133840 82430;82431 82431 2 GFGHTLGNALR Unmodified 1141.5992 0.59924033 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 2 3 2 3 7 6 7 3 4 3 12 10 12 3 3 3 5 3 5 19.401 19.547 1;2;3 6.8238E-20 5349 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 288.6 279.83 53649000000 539400000 474550000 517460000 48389000 56370000 46181000 530540000 467940000 500090000 4230700000 3902900000 3944100000 461740000 399010000 345090000 8471700000 6130800000 6531100000 692120000 560480000 572260000 5528900000 4720300000 3976700000 7204 383 7028 133841;133842;133843;133844;133845;133846;133847;133848;133849;133850;133851;133852;133853;133854;133855;133856;133857;133858;133859;133860;133861;133862;133863;133864;133865;133866;133867;133868;133869;133870;133871;133872;133873;133874;133875;133876;133877;133878;133879;133880;133881;133882;133883;133884;133885;133886;133887;133888;133889;133890;133891;133892;133893;133894;133895;133896;133897;133898;133899;133900;133901;133902;133903;133904;133905;133906;133907;133908;133909;133910;133911;133912;133913;133914;133915;133916;133917;133918;133919;133920;133921;133922;133923;133924;133925;133926;133927;133928;133929;133930;133931;133932;133933;133934;133935;133936;133937;133938;133939;133940;133941;133942;133943;133944;133945;133946;133947;133948;133949;133950;133951 82432;82433;82434;82435;82436;82437;82438;82439;82440;82441;82442;82443;82444;82445;82446;82447;82448;82449;82450;82451;82452;82453;82454;82455;82456;82457;82458;82459;82460;82461;82462;82463;82464;82465;82466;82467;82468;82469;82470;82471;82472;82473;82474;82475;82476;82477;82478;82479;82480;82481;82482;82483;82484;82485;82486;82487;82488;82489;82490;82491;82492;82493;82494;82495;82496;82497;82498;82499;82500;82501;82502;82503;82504;82505;82506;82507;82508;82509;82510;82511;82512;82513;82514;82515;82516;82517;82518;82519;82520;82521;82522;82523;82524;82525;82526;82527;82528;82529;82530;82531;82532;82533;82534;82535;82536;82537;82538;82539;82540;82541;82542;82543 82459 104 GFGHTLGNALRR Unmodified 1297.7004 0.70035136 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 4 3 4 3 2 4 15.887 16.122 1;2;3 1.3055E-11 4191 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 187.14 175.65 19503000000 0 0 0 24709000 26451000 18689000 0 0 0 1024600000 1119400000 1316300000 0 0 0 4770300000 2712800000 2478800000 0 0 0 1971000000 1804800000 2235000000 7205 383 7029 133952;133953;133954;133955;133956;133957;133958;133959;133960;133961;133962;133963;133964;133965;133966;133967;133968;133969;133970;133971;133972;133973;133974;133975;133976;133977;133978;133979;133980;133981;133982;133983;133984 82544;82545;82546;82547;82548;82549;82550;82551;82552;82553;82554;82555;82556;82557;82558;82559;82560;82561;82562;82563;82564;82565;82566;82567;82568;82569;82570;82571 82548 28 GFGLLQLDR Unmodified 1017.5607 0.56072956 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 42.372 40.832 2 0.00016578 19923 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 129.55 30.651 124820000 44076000 43306000 37439000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7206 1548 7030 133985;133986;133987 82572;82573;82574 82573 3 GFGSFSLHYR Unmodified 1169.5618 0.56179219 291 P0A6Y1 ihfB Integration host factor subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 29.181 27.873 2;3 6.3293E-09 9229 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 190.26 185.91 874410000 57112000 49857000 44037000 4965400 3995500 5015900 46707000 36050000 38745000 30727000 37015000 39144000 26226000 23710000 22485000 118620000 97989000 85195000 19229000 16330000 23552000 15754000 17398000 14550000 7207 291 7031 133988;133989;133990;133991;133992;133993;133994;133995;133996;133997;133998;133999;134000;134001;134002;134003;134004;134005;134006;134007;134008;134009;134010;134011;134012;134013;134014;134015;134016;134017;134018;134019;134020;134021;134022;134023;134024;134025;134026;134027;134028;134029;134030;134031;134032;134033 82575;82576;82577;82578;82579;82580;82581;82582;82583;82584;82585;82586;82587;82588;82589;82590;82591;82592;82593;82594;82595;82596;82597;82598;82599;82600;82601;82602;82603;82604;82605 82576 22 GFGVPTLIAVHPENDPK Unmodified 1789.9363 0.93628412 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 38.453 36.755 3 0.13939 17036 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 30.974 27.133 296310000 63070000 60835000 63406000 0 0 0 24462000 17139000 20006000 0 0 0 7499000 7367600 6135000 0 0 0 9277100 7356800 8210000 0 1544800 0 7208 119 7032 134034;134035;134036;134037;134038;134039;134040;134041;134042;134043;134044;134045;134046 82606 82606 0 GFHEEPQVLHYDSR Unmodified 1712.7907 0.79068251 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 1 1 3 3 3 3 3 3 19.1 19.622 2;3;4 6.1556E-20 7746 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 219.43 204.99 2306200000 262970000 258620000 241040000 0 915150 1790700 142730000 167630000 159740000 2091300 1589900 0 136870000 142020000 112240000 0 0 0 217500000 235500000 222930000 0 0 0 7209 829 7033 134047;134048;134049;134050;134051;134052;134053;134054;134055;134056;134057;134058;134059;134060;134061;134062;134063;134064;134065;134066;134067;134068;134069;134070;134071;134072;134073;134074;134075;134076;134077;134078;134079;134080;134081;134082;134083;134084;134085;134086 82607;82608;82609;82610;82611;82612;82613;82614;82615;82616;82617;82618;82619;82620;82621;82622;82623;82624;82625;82626;82627;82628;82629;82630;82631;82632;82633;82634;82635;82636;82637;82638;82639;82640;82641 82609 34 GFHHGTLLLNADLSR Unmodified 1649.8638 0.86378788 1385 P32099 lplA Lipoate-protein ligase A yes yes 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 25.835 24.657 3 0.016049 11420 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 51.073 43.425 43563000 0 0 8966000 0 0 0 13231000 0 10202000 0 0 0 11164000 0 0 0 0 0 0 0 0 0 0 0 7210 1385 7034 134087;134088;134089;134090 82642;82643 82642 0 GFHLVTDEILNQLADMPR Unmodified 2068.0412 0.041159893 910 P0AF48 yjbQ UPF0047 protein YjbQ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.918 52.455 3 1.2797E-09 25813 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.01 91.361 92508000 20372000 24767000 21353000 0 0 0 4410500 5008900 5000100 0 0 0 0 2292700 3609300 0 0 0 5694600 0 0 0 0 0 7211 910 7035 134091;134092;134093;134094;134095;134096;134097;134098;134099 82644;82645 82644 2 GFHNCTPIQALALPLTLAGR Unmodified 2149.1466 0.14662802 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.734 49.425 3 0.14382 24153 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 20.606 16.5 78259000 7646300 11742000 10713000 1178000 1445600 0 0 5152200 4393400 0 0 0 3097700 0 5658900 0 0 0 9776400 8452800 9002900 0 0 0 7212 438 7036 134100;134101;134102;134103;134104;134105;134106;134107;134108;134109;134110;134111 82646;82647 82647 1 GFIDVEQVR Unmodified 1061.5506 0.55055881 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 31.419 30.246 2 2.8006E-08 13602 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 197.65 160.63 724570000 0 68736000 63064000 0 0 0 0 0 0 0 0 0 95880000 98767000 92138000 0 0 0 0 161750000 144240000 0 0 0 7213 1489 7037 134112;134113;134114;134115;134116;134117;134118 82648;82649;82650;82651;82652 82652 5 GFIGIDGISLTVGEVTPTR Unmodified 1931.0364 0.036392091 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.237 52.789 2 2.587E-23 26223 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 264.09 253.24 437840000 43022000 36246000 34785000 0 0 0 39533000 31919000 34669000 0 0 0 38144000 31582000 30834000 0 0 0 41166000 37696000 38249000 0 0 0 7214 963 7038 134119;134120;134121;134122;134123;134124;134125;134126;134127;134128;134129;134130 82653;82654;82655;82656;82657;82658;82659;82660;82661 82653 9 GFIIDDSVLYSGASLNDVYLHQHDK Unmodified 2805.361 0.36097371 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 47.786 46.72 4 0.00011675 22697 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 72.227 64.043 54752000 14273000 10864000 14960000 0 0 0 0 0 0 0 0 0 0 0 3177000 0 1149600 0 6173600 0 4155600 0 0 0 7215 1213 7039 134131;134132;134133;134134;134135;134136;134137 82662 82662 1 GFIKQEK Unmodified 848.4756 0.47560295 1752 P69831 gatC Galactitol permease IIC component yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.37 11.808 2 0.00017395 2510 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 173.59 128.87 211120000 0 2180900 0 12101000 6968600 10096000 0 0 0 55737000 35620000 43517000 0 0 0 7706600 4802400 0 0 0 0 9618300 11993000 10777000 7216 1752 7040 134138;134139;134140;134141;134142;134143;134144;134145;134146;134147;134148;134149 82663;82664;82665;82666;82667;82668;82669;82670 82665 8 GFILHTPPSNFASSIR Unmodified 1742.9104 0.91040372 467 P0A8W5 yqgE UPF0301 protein YqgE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 1 1 2 1 1 1 1 1 1 2 1 1 36.151 34.57 2;3 3.2721E-10 16694 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.86 129.28 302790000 11568000 10643000 12378000 4479600 0 4238400 47097000 48840000 45779000 11597000 10232000 13285000 5798700 4168500 4251000 5769700 3734800 3298600 39878000 8322100 7434600 0 0 0 7217 467 7041 134150;134151;134152;134153;134154;134155;134156;134157;134158;134159;134160;134161;134162;134163;134164;134165;134166;134167;134168;134169;134170;134171;134172;134173;134174;134175;134176;134177 82671;82672;82673;82674;82675;82676;82677;82678;82679;82680;82681;82682;82683;82684 82677 14 GFIRVDK Unmodified 833.47594 0.4759373 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 3 3 2 1 1 1 1 1 1 2 2 2 14.369 14.878 1;2 0.00031611 3875 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 167.24 130.68 1293900000 0 0 7842300 201430000 190910000 192150000 0 0 0 13815000 12297000 15136000 0 0 0 12349000 5614600 5550300 0 0 0 215930000 201750000 219140000 7218 542 7042 134178;134179;134180;134181;134182;134183;134184;134185;134186;134187;134188;134189;134190;134191;134192;134193;134194;134195;134196;134197;134198 82685;82686;82687;82688;82689;82690;82691;82692;82693 82688 9 GFLALLR Unmodified 788.49086 0.49085908 1667 P64423 zntB Zinc transport protein ZntB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.887 42.252 2 0.0014012 21032 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 130.65 28.931 36635000 3202900 0 2315200 1135500 861420 775410 4188100 3424900 5268700 2789300 0 0 2158900 1560600 1667700 0 0 0 0 3481000 3805800 0 0 0 7219 1667 7043 134199;134200;134201;134202;134203;134204;134205;134206;134207;134208;134209;134210;134211;134212 82694;82695;82696 82696 3 GFLFDLDGTLVDSLPAVER Unmodified 2063.0575 0.057521464 1922 P77625 yfbT Sugar phosphatase YfbT yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 55.543 54.126 2 3.4012E-16 26645 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 139.7 129.58 60265000 0 9437100 7728300 0 0 0 12360000 0 0 0 0 0 8412300 8738200 8919600 0 0 0 0 0 4669100 0 0 0 7220 1922 7044 134213;134214;134215;134216;134217;134218;134219 82697 82697 0 GFLIGGTSGR Unmodified 963.51378 0.51377937 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 2 1 27.213 25.973 2 1.7186E-06 9114 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 161.9 123.53 31462000000 910200000 860970000 795070000 2647400000 2768100000 3235800000 1197600000 1166500000 1094200000 387290000 359170000 367820000 795800000 651700000 605490000 166980000 109150000 130410000 1272200000 1242700000 1176000000 3032700000 3339000000 3149500000 7221 939 7045 134220;134221;134222;134223;134224;134225;134226;134227;134228;134229;134230;134231;134232;134233;134234;134235;134236;134237;134238;134239;134240;134241;134242;134243;134244;134245;134246;134247 82698;82699;82700;82701;82702;82703;82704;82705;82706;82707;82708;82709;82710;82711;82712;82713;82714;82715;82716;82717;82718;82719;82720;82721;82722;82723;82724;82725;82726;82727;82728;82729;82730;82731;82732;82733;82734;82735;82736;82737;82738;82739;82740;82741;82742;82743;82744;82745;82746;82747;82748;82749 82720 52 GFLQTLAR Unmodified 904.51305 0.51305109 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.48 30.951 2 2.0316E-06 14811 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 188.61 154.87 2380700000 187690000 155300000 139340000 1192700 1013200 1382100 246760000 233680000 214560000 1984100 2675100 0 176040000 170010000 173690000 0 0 0 237660000 224090000 211970000 0 0 1641600 7222 158 7046 134248;134249;134250;134251;134252;134253;134254;134255;134256;134257;134258;134259;134260;134261;134262;134263;134264;134265 82750;82751;82752;82753;82754;82755;82756;82757;82758;82759;82760;82761 82752 11 GFMEVETPMMQVIPGGAAAR Oxidation (M) 2106.9901 0.9900523 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 46.385 44.909 2 0.015134 22569 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 53.448 15.27 20323000 0 0 4339200 0 0 0 10442000 0 0 0 0 0 0 3468300 2074100 0 0 0 0 0 0 0 0 0 7223 448 7047 134266;134267;134268;134269 82762 82762 217 0 GFMEVETPMMQVIPGGAAAR Unmodified 2090.9951 0.99513768 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1 1 2 3 2 2 2 2 51.521 50.304 2;3 6.0092E-23 24324 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 216.84 215.01 2425000000 137120000 208880000 124990000 0 0 0 131380000 139490000 127810000 0 0 0 286440000 241330000 246500000 0 0 0 248310000 260350000 272390000 0 0 0 7224 448 7047 134270;134271;134272;134273;134274;134275;134276;134277;134278;134279;134280;134281;134282;134283;134284;134285;134286;134287;134288;134289;134290 82763;82764;82765;82766;82767;82768;82769;82770;82771;82772;82773;82774;82775;82776;82777;82778;82779 82768 17 GFMEVETPMMQVIPGGASAR Unmodified 2106.9901 0.9900523 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.241 49.989 2;3 3.1578E-23 24394 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 242.79 96.434 2370800000 257110000 234900000 206330000 0 0 0 273400000 275750000 258010000 0 0 0 171660000 157910000 153450000 0 0 0 128900000 135200000 118210000 0 0 0 7225 449 7048 134291;134292;134293;134294;134295;134296;134297;134298;134299;134300;134301;134302;134303;134304;134305;134306;134307;134308;134309;134310;134311;134312;134313;134314 82780;82781;82782;82783;82784;82785;82786;82787;82788;82789;82790;82791;82792;82793;82794 82787 15 GFMEVETPMMQVIPGGASAR Oxidation (M) 2122.985 0.98496692 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 1 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 46.232 44.698 2 8.0706E-05 22591 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 70.332 41.004 12092000 0 0 1991700 0 0 0 4586300 0 2820700 0 0 0 1221900 0 1471500 0 0 0 0 0 0 0 0 0 7226 449 7048 134315;134316;134317;134318;134319 82795 82795 219 0 GFNEEDFAR Unmodified 1083.4621 0.46213773 1135 P17115 gutQ Arabinose 5-phosphate isomerase GutQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.897 23 2 0.00014665 9973 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 153.73 149.37 289960000 23364000 27655000 20620000 0 0 0 22844000 25688000 22534000 0 0 0 24024000 23257000 22079000 0 0 0 26172000 26916000 24811000 0 0 0 7227 1135 7049 134320;134321;134322;134323;134324;134325;134326;134327;134328;134329;134330;134331 82796;82797;82798;82799;82800;82801;82802;82803;82804;82805 82801 10 GFNEGVFTAAK Unmodified 1139.5611 0.56112349 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 28.405 27.141 2 2.8113E-05 12417 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.57 127.91 1547900000 298920000 229060000 237250000 0 778990 0 56780000 69217000 64581000 0 0 0 82384000 71356000 70597000 0 0 0 124010000 128110000 114890000 0 0 0 7228 104 7050 134332;134333;134334;134335;134336;134337;134338;134339;134340;134341;134342;134343;134344 82806;82807;82808;82809;82810;82811;82812;82813;82814;82815;82816 82811 11 GFNVDHSGK Unmodified 959.44609 0.44609374 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 11.29 11.989 2 0.00043569 3038 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.31 98.405 459840000 173150000 133890000 152800000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7229 1610 7051 134345;134346;134347 82817;82818;82819 82818 1 GFPGDDEEAQR Unmodified 1219.5105 0.51054449 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.328 17.132 2 0.0022405 5661 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 72.643 72.643 95166000 8825800 5687700 6420600 0 0 0 7687200 7978300 6846400 0 0 0 9997300 7254200 6478900 0 0 0 9150200 10117000 8722500 0 0 0 7230 197 7052 134348;134349;134350;134351;134352;134353;134354;134355;134356;134357;134358;134359 82820;82821;82822 82822 3 GFPGDDEEAQRR Unmodified 1375.6117 0.61165551 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.728 13.592 3 0.12732 4044 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 29.55 25.787 54355000 5105400 5402900 0 0 0 0 0 5878600 4183000 0 0 0 8057500 3477600 3770100 0 0 0 6598000 6535200 5346800 0 0 0 7231 197 7053 134360;134361;134362;134363;134364;134365;134366;134367;134368;134369 82823 82823 0 GFPHADYPDAVR Unmodified 1343.6258 0.62584901 1449 P36929 rsmB Ribosomal RNA small subunit methyltransferase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.299 21.872 3 0.0037816 9080 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 62.924 60.867 129020000 17828000 12377000 16980000 0 0 0 8622400 13237000 6507900 0 0 2905700 4911300 6009500 4614400 963250 0 849390 10504000 10879000 10197000 0 0 1637500 7232 1449 7054 134370;134371;134372;134373;134374;134375;134376;134377;134378;134379;134380;134381;134382;134383;134384;134385 82824;82825;82826 82826 3 GFPLAYVGDVVGTGSSR Unmodified 1680.8471 0.84713476 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 48.686 47.444 2;3 1.1852E-10 22940 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 194.39 192.45 5910700000 806590000 835520000 692550000 7984100 8381800 9558700 341870000 357590000 337450000 856630 0 0 312320000 270730000 294020000 3054700 1269800 1154900 578940000 541150000 502630000 0 4127600 2934100 7233 1444 7055 134386;134387;134388;134389;134390;134391;134392;134393;134394;134395;134396;134397;134398;134399;134400;134401;134402;134403;134404;134405;134406;134407;134408;134409;134410;134411;134412;134413;134414;134415;134416;134417;134418;134419;134420;134421 82827;82828;82829;82830;82831;82832;82833;82834;82835;82836;82837;82838;82839;82840;82841;82842;82843;82844;82845;82846;82847;82848;82849;82850;82851;82852;82853 82846 27 GFQSEVK Unmodified 793.39702 0.39701828 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.414 13.202 2 0.025147 3583 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.949 15.923 1365800000 99885000 105840000 80870000 2328900 0 2315900 130720000 151880000 126600000 0 2532400 0 124650000 96195000 113270000 0 0 0 122980000 107820000 95747000 0 2217700 0 7234 295 7056 134422;134423;134424;134425;134426;134427;134428;134429;134430;134431;134432;134433;134434;134435;134436;134437 82854;82855 82855 1 GFSATTFDELQKPMSER Unmodified 1942.9095 0.90947702 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.193 32.745 3 4.8784E-07 15031 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 106.36 105.32 350290000 15117000 14716000 15208000 0 0 0 36166000 43239000 28843000 0 0 0 37323000 35330000 36070000 0 0 0 25769000 31872000 30631000 0 0 0 7235 1961 7057 134438;134439;134440;134441;134442;134443;134444;134445;134446;134447;134448;134449 82856;82857;82858 82856 3 GFSEMFEK Unmodified 973.42152 0.42151847 934 P0AFF2 nupC Nucleoside permease NupC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.521 28.959 2 0.0021725 13584 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 102.71 96.327 153920000 3671600 5425600 3796400 0 0 0 13788000 14989000 13099000 1197100 1306100 1682800 17275000 12021000 14673000 0 0 0 17362000 17168000 16466000 0 0 0 7236 934 7058 134450;134451;134452;134453;134454;134455;134456;134457;134458;134459;134460;134461;134462;134463;134464 82859;82860;82861;82862 82861 2 GFSGEDATPALEGADVVLISAGVAR Unmodified 2401.2125 0.21251856 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 1 54.306 52.863 2;3 3.4329E-84 24912 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 310.74 308.11 6543900000 1148700000 1039200000 1013500000 0 0 0 344750000 312590000 246670000 0 0 0 308200000 300120000 262830000 0 0 0 545210000 521980000 472300000 23188000 0 4687700 7237 1642 7059 134465;134466;134467;134468;134469;134470;134471;134472;134473;134474;134475;134476;134477;134478;134479;134480;134481;134482;134483;134484;134485;134486;134487;134488;134489;134490 82863;82864;82865;82866;82867;82868;82869;82870;82871;82872;82873;82874;82875;82876;82877;82878;82879;82880;82881;82882 82882 20 GFSIDLWAMPVQR Unmodified 1518.7653 0.76531938 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 54.047 52.641 2 0.00382 25936 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.29 71.132 1294600000 451040000 419060000 424460000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7238 1219 7060 134491;134492;134493 82883;82884 82884 0 GFSIDLWAMPVQRPYNPNAR Unmodified 2331.1583 0.15825534 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 49.689 48.287 2;3 1.2402E-45 23581 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 310.85 305.57 1165900000 413900000 328290000 337370000 5235100 4528500 5662600 9336100 9512500 9653300 0 0 0 0 0 3457700 0 0 0 11306000 17017000 10676000 0 0 0 7239 1219 7061 134494;134495;134496;134497;134498;134499;134500;134501;134502;134503;134504;134505;134506;134507;134508;134509 82885;82886;82887;82888;82889;82890;82891 82889 7 GFSLAQK Unmodified 749.40719 0.40718903 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 3 1 3 2 2 2 2 2 2 1 2 1 1 3 1 2 1 1 1 17.343 17.849 1;2 0.00059458 6504 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 157.99 106.95 3676600000 407480000 449430000 386700000 4871000 10476000 3099700 292660000 260850000 199870000 3735800 3214900 3467700 45267000 189420000 240700000 0 2033800 1653000 426150000 357620000 379400000 2985100 2608000 2876600 7240 1444 7062 134510;134511;134512;134513;134514;134515;134516;134517;134518;134519;134520;134521;134522;134523;134524;134525;134526;134527;134528;134529;134530;134531;134532;134533;134534;134535;134536;134537;134538;134539;134540;134541;134542;134543;134544;134545;134546;134547;134548;134549;134550 82892;82893;82894;82895;82896;82897;82898;82899;82900;82901;82902;82903;82904;82905 82899 14 GFSSGSAVVSGGSR Unmodified 1253.6 0.60002819 17 CON__P35908 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.541 16.874 2 7.5964E-07 4507 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 131.82 129.42 121550000 0 0 0 12844000 10702000 12126000 0 0 0 0 6250300 5936300 0 0 0 11797000 9202400 8307900 0 0 0 17680000 13184000 13523000 + 7241 17 7063 134551;134552;134553;134554;134555;134556;134557;134558;134559;134560;134561;134562 82906;82907;82908;82909;82910;82911;82912;82913;82914;82915;82916 82906 8 GFSVNFER Unmodified 954.45593 0.45593014 247 P0A6I0 cmk Cytidylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.245 27.98 2 0.0006403 13381 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.4 116.41 828060000 59665000 60986000 63976000 1377700 1011700 1104800 63011000 59491000 55714000 2200000 0 2347400 59035000 62768000 60144000 1515900 885590 1157100 92457000 88877000 84852000 2272800 1443500 1764800 7242 247 7064 134563;134564;134565;134566;134567;134568;134569;134570;134571;134572;134573;134574;134575;134576;134577;134578;134579;134580;134581;134582;134583;134584;134585 82917;82918;82919;82920;82921;82922;82923;82924;82925;82926;82927 82919 4 GFTAEDFALSHPGGALGR Unmodified 1801.8747 0.87474649 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 2 1 1 1 36.573 34.946 2;3 4.4145E-55 17260 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 287.45 285.76 1009800000 107510000 88882000 87062000 1566600 1164300 1018200 67892000 78967000 63854000 1564500 1603100 0 79572000 74260000 70835000 0 1039200 0 87762000 95095000 95768000 1486300 1264100 1672400 7243 1565 7065 134586;134587;134588;134589;134590;134591;134592;134593;134594;134595;134596;134597;134598;134599;134600;134601;134602;134603;134604;134605;134606;134607;134608;134609;134610;134611;134612;134613;134614;134615;134616;134617;134618 82928;82929;82930;82931;82932;82933;82934;82935;82936;82937;82938;82939;82940;82941;82942;82943;82944;82945 82929 18 GFTPLFRPDTPEEYKPTVR Unmodified 2249.1481 0.14806781 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 33.382 31.73 3;4 4.6549E-14 14864 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 144.5 143.35 535460000 73031000 79717000 65451000 0 1080700 1567100 54351000 51736000 50447000 2610100 2542100 3662900 4838100 4556600 6434600 0 0 0 24692000 24476000 25589000 20116000 19103000 19454000 7244 510 7066 134619;134620;134621;134622;134623;134624;134625;134626;134627;134628;134629;134630;134631;134632;134633;134634;134635;134636;134637;134638;134639;134640;134641;134642;134643;134644;134645;134646;134647;134648;134649;134650 82946;82947;82948;82949;82950;82951;82952;82953;82954;82955;82956 82955 11 GFTPSRPGHLHGAHS Unmodified 1556.7597 0.75965715 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.336 11.955 2 1.7558E-06 3047 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 118.9 114.98 91753000 4945100 10364000 5900100 0 0 2349900 0 15408000 0 7962100 7358400 7205500 3458600 0 0 0 0 0 0 10296000 10311000 0 0 6193900 7245 252 7067 134651;134652;134653;134654;134655;134656;134657;134658;134659;134660;134661;134662 82957;82958 82958 2 GFTQDDAHIFCTEEQIR Unmodified 2065.9164 0.91635331 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.12 31.68 3 3.1114E-05 14381 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 84.14 83.271 469580000 37575000 38293000 33561000 0 0 0 40169000 41761000 42388000 0 0 0 33376000 42455000 35160000 0 0 0 33814000 46833000 44199000 0 0 0 7246 445 7068 134663;134664;134665;134666;134667;134668;134669;134670;134671;134672;134673;134674 82959;82960;82961;82962 82962 2 GFTQDDAHIFCTEEQIRDEVNGCIR Unmodified 3009.3345 0.33451774 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 41.571 39.84 3;4 2.3393E-22 19306 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 171.58 171.58 1527200000 150480000 131850000 107150000 1117100 1990400 1969100 119130000 122260000 93227000 0 2978600 3559900 103040000 89223000 107110000 0 0 0 164450000 182010000 145680000 0 0 0 7247 445 7069 134675;134676;134677;134678;134679;134680;134681;134682;134683;134684;134685;134686;134687;134688;134689;134690;134691;134692;134693;134694;134695;134696;134697;134698;134699;134700;134701;134702;134703 82963;82964;82965;82966;82967;82968;82969;82970;82971;82972;82973;82974;82975;82976;82977;82978;82979;82980;82981;82982;82983;82984;82985;82986;82987 82974 25 GFTSEITVTSNGK Unmodified 1339.662 0.66195975 568 P0AA04 ptsH Phosphocarrier protein HPr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.051 24.103 2 2.3913E-12 10545 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 232.41 223.22 1925600000 97240000 87809000 92688000 2189600 2402100 1671000 227610000 235310000 223840000 1536700 1192500 0 156560000 148760000 121360000 1683700 728940 874140 188120000 172280000 161720000 0 0 0 7248 568 7070 134704;134705;134706;134707;134708;134709;134710;134711;134712;134713;134714;134715;134716;134717;134718;134719;134720;134721;134722;134723 82988;82989;82990;82991;82992;82993;82994;82995;82996;82997;82998;82999;83000;83001 82997 12 GFVICTPDPK Unmodified 1132.5587 0.55868065 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 29.557 28.283 2 0.00032845 13273 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.22 107.36 202320000 67361000 67514000 60082000 0 0 0 0 3050500 0 0 0 0 0 0 0 0 0 0 0 4315700 0 0 0 0 7249 71 7071 134724;134725;134726;134727;134728 83002;83003;83004 83002 3 GFVLGYSHR Unmodified 1034.5298 0.52976378 1688 P64574 yghW Uncharacterized protein YghW yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 20.615 20.659 2 0.012293 6355 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 65.246 61.393 60492000 0 0 0 0 0 0 7050100 0 3201100 8166900 3862100 0 3539500 0 0 0 0 0 10431000 7516500 8766600 2594300 2506700 2857300 7250 1688 7072 134729;134730;134731;134732;134733;134734;134735;134736;134737;134738;134739 83005;83006;83007 83007 3 GFVTYSNEAK Unmodified 1114.5295 0.52948901 242 P0A6G3 pncC Nicotinamide-nucleotide amidohydrolase PncC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.976 18.571 2 4.7114E-07 7047 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 175.38 154.86 172450000 10793000 10052000 7676000 0 0 0 24967000 23385000 22866000 0 0 0 7068500 7627600 7485300 0 0 0 17531000 17346000 15653000 0 0 0 7251 242 7073 134740;134741;134742;134743;134744;134745;134746;134747;134748;134749;134750;134751 83008;83009;83010;83011;83012;83013 83009 6 GFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQR Unmodified 4040.9619 0.96185352 315 P0A763 ndk Nucleoside diphosphate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 55.774 54.31 4 1.9259E-72 26664 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 259.53 258.17 1298900000 173820000 152060000 165670000 0 2565300 0 79586000 50628000 73611000 0 0 0 39682000 44295000 40293000 0 0 0 162030000 164730000 149900000 0 0 0 7252 315 7074 134752;134753;134754;134755;134756;134757;134758;134759;134760;134761;134762;134763;134764 83014;83015;83016;83017;83018;83019;83020 83016 7 GFYPACGALCAGIEK Unmodified 1612.7378 0.737784 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.097 35.237 2 4.5854E-06 12389 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 104.87 104.87 136650000 8043600 7197400 0 18601000 21764000 20640000 6113400 7393200 5918600 1893900 2070800 1799400 3765900 3480500 5368000 0 0 0 6716300 7679200 6448300 1759600 0 0 7253 906 7075 134765;134766;134767;134768;134769;134770;134771;134772;134773;134774;134775;134776;134777;134778;134779;134780;134781;134782 83021;83022;83023 83022 3 GFYPMVAAQR Unmodified 1138.5593 0.55934935 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.832 29.476 2 0.041641 14093 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 68.787 61.116 92922000 11244000 10905000 12379000 0 0 0 6894200 6462600 9252800 0 0 0 5180900 4964600 4620700 0 0 0 5316600 8201500 7500000 0 0 0 7254 1006 7076 134783;134784;134785;134786;134787;134788;134789;134790;134791;134792;134793;134794 83024;83025 83024 1 GFYSQCAK Unmodified 959.4171 0.41710179 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.193 13.866 2 0.073637 4232 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.648 60.648 418240000 65087000 66948000 0 3026700 1897000 2142700 50027000 53143000 52331000 3083600 2650500 2241800 20415000 0 18691000 0 0 0 19035000 24946000 27243000 1868500 1550700 1909300 7255 553 7077 134795;134796;134797;134798;134799;134800;134801;134802;134803;134804;134805;134806;134807;134808;134809;134810;134811;134812;134813 83026 83026 0 GGAALEQLGR Unmodified 970.51959 0.51959303 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.628 19.924 2 0.00061841 6478 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.318 60.029 110500000 3789700 5070800 0 2037300 2325400 2071300 10990000 11116000 10431000 4043200 3507100 3906900 8914400 6268000 8646200 0 0 0 7921700 8939600 7703600 1636700 1177900 0 7256 1475 7078 134814;134815;134816;134817;134818;134819;134820;134821;134822;134823;134824;134825;134826;134827;134828;134829;134830;134831;134832 83027;83028;83029;83030;83031 83027 2 GGAALSIR Unmodified 743.42899 0.42898711 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.107 16.59 2 0.085552 4637 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 52.268 36.114 448370000 36326000 32253000 28733000 8828500 0 0 19743000 19299000 29488000 24644000 22893000 19641000 0 19157000 18379000 4632000 5179800 4388000 40777000 45393000 38853000 9706900 10831000 9223900 7257 1009 7079 134833;134834;134835;134836;134837;134838;134839;134840;134841;134842;134843;134844;134845;134846;134847;134848;134849;134850;134851;134852;134853 83032;83033 83032 1 GGAASVASITPQER Unmodified 1342.6841 0.68409218 1043 P0C0U4 rimK Ribosomal protein S6--L-glutamate ligase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 20.039 19.994 2 0.00012583 6129 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 85.958 81.709 12446000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3046600 4253000 5146200 7258 1043 7080 134854;134855;134856 83034;83035 83035 2 GGAATLFYPMWHLEVESLLVLK Unmodified 2473.3079 0.30793927 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.45 53.979 3 1.2815E-06 26468 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.463 87.017 1151000000 89712000 77195000 93609000 0 0 0 99614000 95428000 81474000 0 0 0 77645000 66234000 59150000 0 0 0 150210000 135900000 122890000 1946300 0 0 7259 29 7081 134857;134858;134859;134860;134861;134862;134863;134864;134865;134866;134867;134868;134869 83036;83037;83038;83039;83040;83041;83042;83043;83044;83045;83046 83040 11 GGADGIAAINTVK Unmodified 1185.6354 0.63535107 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 24.755 23.674 2 0.0005717 10080 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.813 77.51 118720000 0 0 0 0 0 0 31235000 30514000 20975000 0 0 0 9898900 8638800 8549000 0 0 0 4227800 0 4681300 0 0 0 7260 1276 7082 134870;134871;134872;134873;134874;134875;134876;134877 83047;83048;83049;83050;83051;83052 83050 6 GGAGFSTGLK Unmodified 893.46068 0.46068117 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.525 17.964 2 0.00059012 5233 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 93.162 54.344 704020000 27176000 26208000 26186000 22072000 20248000 19218000 51575000 54751000 43692000 22234000 17571000 17123000 37283000 37528000 38075000 6826700 3105300 4631800 60986000 62334000 49275000 19291000 18415000 18218000 7261 1383 7083 134878;134879;134880;134881;134882;134883;134884;134885;134886;134887;134888;134889;134890;134891;134892;134893;134894;134895;134896;134897;134898;134899;134900;134901 83053;83054;83055;83056;83057;83058;83059;83060;83061;83062;83063;83064;83065 83057 13 GGAIVTVASDAAHTPR Unmodified 1521.79 0.78995423 1103 P15047 entA 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 1 2 1 1 1 2 2 2 2 2 2 1 1 21.137 21.334 2;3 6.9797E-24 8563 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 212.89 193.76 688290000 15894000 19054000 16679000 960060 1345900 968680 19121000 24338000 22097000 140570000 0 1984500 49577000 44897000 49715000 0 0 0 92103000 101560000 84570000 0 1302700 1550300 7262 1103 7084 134902;134903;134904;134905;134906;134907;134908;134909;134910;134911;134912;134913;134914;134915;134916;134917;134918;134919;134920;134921;134922;134923;134924;134925;134926;134927;134928 83066;83067;83068;83069;83070;83071;83072;83073;83074;83075;83076;83077;83078;83079;83080;83081;83082;83083;83084;83085 83071 19 GGALDYQEWCAAHPGER Unmodified 1915.8271 0.82714437 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 28.005 26.766 2;3 8.315E-09 12614 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.59 110.68 379980000 47365000 47073000 37631000 1950900 2239000 3328000 19712000 24649000 20238000 6750400 5660400 6047200 17403000 13835000 11539000 1485400 0 1135100 35807000 33654000 32815000 2549500 3898900 3217700 7263 582 7085 134929;134930;134931;134932;134933;134934;134935;134936;134937;134938;134939;134940;134941;134942;134943;134944;134945;134946;134947;134948;134949;134950;134951;134952;134953;134954;134955;134956;134957 83086;83087;83088;83089;83090;83091;83092;83093;83094;83095;83096;83097;83098;83099;83100;83101;83102;83103;83104;83105;83106;83107 83089 19 GGAPAHAALLSQPPGSLK Unmodified 1670.9104 0.91040372 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 22.878 22.32 2;3 1.1296E-36 9446 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 239.19 216.72 2778900000 376550000 364900000 379710000 0 0 0 245350000 231790000 227040000 0 0 0 139990000 104230000 137030000 0 288510 0 159060000 212000000 200980000 0 0 0 7264 43 7086 134958;134959;134960;134961;134962;134963;134964;134965;134966;134967;134968;134969;134970;134971;134972;134973;134974;134975;134976;134977;134978;134979;134980;134981;134982 83108;83109;83110;83111;83112;83113;83114;83115;83116;83117;83118;83119;83120;83121;83122;83123;83124;83125;83126;83127;83128;83129;83130;83131 83121 24 GGAPVEIAWPQK Unmodified 1251.6612 0.66117189 1325 P28905 holC DNA polymerase III subunit chi yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.877 33.42 2 0.00095352 16023 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 78.06 71.337 137670000 16207000 17486000 19192000 0 0 0 10879000 7415300 12599000 0 0 0 7232800 6667700 7090900 0 0 0 10744000 12874000 9279900 0 0 0 7265 1325 7087 134983;134984;134985;134986;134987;134988;134989;134990;134991;134992;134993;134994 83132;83133;83134;83135;83136;83137;83138;83139;83140 83135 7 GGAQGDLLCR Unmodified 1045.4975 0.49747738 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 17.959 18.086 2 0.0083005 5317 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 65.246 25.6 83796000 0 0 0 0 0 0 0 0 0 0 24834000 0 0 0 14983000 4166500 4323100 4820000 0 0 0 14302000 0 16367000 7266 190 7088 134995;134996;134997;134998;134999;135000;135001 83141;83142 83142 2 GGAWMDDCVGQMR Unmodified 1481.585 0.58498853 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.444 30.088 2 1.9413E-12 14173 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 191.85 191.85 870860000 109690000 100240000 90983000 0 0 0 66078000 67594000 70105000 0 0 0 59102000 46973000 48610000 0 0 0 70194000 65922000 75370000 0 0 0 7267 1298 7089 135002;135003;135004;135005;135006;135007;135008;135009;135010;135011;135012;135013 83143;83144;83145;83146;83147;83148;83149;83150;83151;83152;83153;83154 83149 12 GGCINVLTTQRPSPLAK Unmodified 1810.9724 0.97235205 1152 P18775 dmsA Dimethyl sulfoxide reductase DmsA yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 26.824 25.543 3 0.0053892 9355 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 50.608 44.171 48769000 0 0 0 0 0 0 0 12344000 0 0 3138400 5157700 5955400 0 6260700 0 0 0 8959400 0 6953600 0 0 0 7268 1152 7090 135014;135015;135016;135017;135018;135019;135020 83155 83155 1 GGDFAALAK Unmodified 848.43922 0.43921744 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.805 21.614 2 0.0072664 7363 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 67.981 59.298 305330000 5821600 5584600 5629200 2132400 1928200 2405000 28510000 29262000 37347000 6274300 3926500 0 37252000 28343000 0 1412100 1100600 1323200 2703200 50110000 42142000 2981000 4950500 4194100 7269 819 7091 135021;135022;135023;135024;135025;135026;135027;135028;135029;135030;135031;135032;135033;135034;135035;135036;135037;135038;135039;135040;135041;135042 83156;83157;83158;83159;83160;83161;83162;83163;83164;83165;83166;83167 83156 12 GGDGNYGYNAATEEYGNMIDMGILDPTK Unmodified 2965.2746 0.27460282 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 54.148 52.714 2;3 6.2158E-108 24799 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 335.41 335.41 4108500000 379790000 347910000 301270000 8321800 21035000 26050000 250530000 235920000 229740000 13967000 13517000 18118000 336640000 356720000 328540000 0 0 0 393870000 390770000 421750000 9200100 8785600 16063000 7270 240 7092 135043;135044;135045;135046;135047;135048;135049;135050;135051;135052;135053;135054;135055;135056;135057;135058;135059;135060;135061;135062;135063;135064;135065;135066;135067;135068;135069;135070;135071;135072;135073;135074;135075;135076;135077;135078;135079;135080;135081 83168;83169;83170;83171;83172;83173;83174;83175;83176;83177;83178;83179;83180;83181;83182;83183;83184;83185;83186;83187;83188;83189;83190;83191 83191 24 GGDIEETAFNTNLEAADEIAR Unmodified 2235.0291 0.029134462 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.049 43.444 2 4.6359E-22 21346 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 230.26 197.07 83024000 11636000 8285000 8816700 1560600 910010 1320400 7822100 4681800 4731000 1607200 0 1430300 3555300 0 4461000 0 0 0 6985900 8127200 7093000 0 0 0 7271 1183 7093 135082;135083;135084;135085;135086;135087;135088;135089;135090;135091;135092;135093;135094;135095;135096;135097 83192;83193;83194;83195;83196 83193 1 GGDIKDFANLK Unmodified 1176.6139 0.61388734 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 23.613 22.898 2 4.2602E-07 9729 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 162.64 146.97 94274000 20210000 28363000 20570000 0 0 0 3179300 0 2512700 0 0 0 2611000 2669200 0 0 0 0 3941000 4262800 5955000 0 0 0 7272 1501 7094 135098;135099;135100;135101;135102;135103;135104;135105;135106;135107;135108 83197;83198;83199;83200 83200 4 GGDLGEFR Unmodified 849.39808 0.39808091 534 P0A9L5 ppiC Peptidyl-prolyl cis-trans isomerase C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.331 19.74 2 0.00060158 7114 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 131.04 113.27 627830000 51287000 45345000 46162000 833060 0 0 54435000 57749000 50584000 690610 820410 759260 49393000 42029000 40085000 0 0 0 57860000 65901000 63902000 0 0 0 7273 534 7095 135109;135110;135111;135112;135113;135114;135115;135116;135117;135118;135119;135120;135121;135122;135123;135124 83201;83202;83203;83204;83205;83206;83207;83208;83209;83210;83211;83212 83212 12 GGDLGQPFQFK Unmodified 1192.5877 0.58767259 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.412 32.93 2 0.00018116 15042 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 106.91 103.06 4568800000 640290000 610450000 514050000 1907900 1775900 1595800 408740000 402770000 414480000 0 0 0 228230000 222270000 210710000 0 0 0 311730000 293520000 306330000 0 0 0 7274 423 7096 135125;135126;135127;135128;135129;135130;135131;135132;135133;135134;135135;135136;135137;135138;135139 83213;83214;83215;83216;83217 83216 5 GGDPFIFGR Unmodified 964.47667 0.47666558 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.709 35.056 2 0.00055182 16778 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.32 94.886 89743000 7788400 7272600 6582300 0 0 0 9031700 8009600 9526700 0 0 0 6190000 5087300 4926300 0 0 0 6492100 9195800 9640300 0 0 0 7275 843 7097 135140;135141;135142;135143;135144;135145;135146;135147;135148;135149;135150;135151 83218;83219;83220 83220 3 GGDTVTLNETDLTQIPK Unmodified 1800.9105 0.91052288 885 P0AET2 hdeB Acid stress chaperone HdeB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 3 3 3 1 1 1 2 2 2 2 2 2 38.85 37.062 2;3 8.4008E-19 17786 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 189.33 173.79 15880000000 2855300000 2232900000 2306500000 2356000 0 0 2334400000 2285700000 2180300000 2264700 2167100 2179100 347020000 299750000 324620000 0 0 0 254190000 236570000 213380000 0 0 0 7276 885 7098 135152;135153;135154;135155;135156;135157;135158;135159;135160;135161;135162;135163;135164;135165;135166;135167;135168;135169;135170;135171;135172;135173;135174;135175;135176;135177;135178;135179;135180;135181;135182;135183;135184 83221;83222;83223;83224;83225;83226;83227;83228;83229;83230;83231;83232;83233;83234;83235;83236;83237;83238;83239;83240;83241;83242 83231 21 GGDVEQALLPAYPK Unmodified 1456.7562 0.75619449 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.974 36.334 2 1.8484E-11 14066 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 176.48 172.02 607400000 0 0 0 7745000 6978800 8154300 43059000 43148000 43705000 11230000 15257000 14852000 46630000 46931000 42995000 6321200 3271600 4426600 69636000 77143000 72554000 16052000 13819000 13492000 7277 1267 7099 135185;135186;135187;135188;135189;135190;135191;135192;135193;135194;135195;135196;135197;135198;135199;135200;135201;135202;135203;135204;135205 83243;83244;83245;83246;83247;83248;83249;83250;83251;83252;83253;83254;83255;83256;83257;83258;83259;83260 83251 17 GGDYKPEEIAGSK Unmodified 1349.6463 0.64630969 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 13.242 13.941 2;3 2.0389E-05 3997 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 127.78 127.78 813970000 59269000 61409000 47900000 2266700 1953200 0 73639000 63585000 60209000 8935300 8421900 7986100 61573000 73854000 58099000 0 0 0 74352000 66013000 82577000 1928100 0 0 7278 1880 7100 135206;135207;135208;135209;135210;135211;135212;135213;135214;135215;135216;135217;135218;135219;135220;135221;135222;135223;135224;135225;135226;135227;135228;135229;135230;135231;135232;135233;135234;135235;135236;135237;135238;135239 83261;83262;83263;83264;83265;83266;83267;83268;83269;83270;83271;83272;83273;83274;83275;83276;83277;83278;83279;83280;83281;83282;83283;83284;83285 83281 25 GGEAFHTGCIPFYK Unmodified 1582.7238 0.7238485 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 2 2 2 1 1 2 2 2 1 2 2 2 1 1 31.298 29.885 2;3 2.4551E-11 13932 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 218.11 198.79 1261400000 115940000 116280000 108890000 0 1090900 0 106700000 122960000 118630000 3125100 0 1403000 97253000 107010000 84843000 0 0 1272100 191580000 34097000 43745000 0 3010400 3545600 7279 29 7101 135240;135241;135242;135243;135244;135245;135246;135247;135248;135249;135250;135251;135252;135253;135254;135255;135256;135257;135258;135259;135260;135261;135262;135263;135264;135265;135266;135267;135268;135269;135270 83286;83287;83288;83289;83290;83291;83292;83293;83294;83295;83296;83297;83298;83299;83300;83301;83302;83303;83304;83305;83306;83307;83308;83309;83310;83311 83298 26 GGEQNEDQLLQDAYLNSLR Unmodified 2162.024 0.023989504 420 P0A8D6 ymdB O-acetyl-ADP-ribose deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.935 45.546 2 1.1265E-67 22325 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 308.84 296.86 109820000 17829000 16490000 12981000 0 0 0 10816000 10459000 9786800 0 0 0 5018000 3561600 3581300 0 0 0 7444900 7899800 3952300 0 0 0 7280 420 7102 135271;135272;135273;135274;135275;135276;135277;135278;135279;135280;135281;135282 83312;83313;83314;83315 83313 4 GGESVNDQGAEDQR Unmodified 1460.6128 0.61277773 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.929 11.708 2 8.6628E-45 2905 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 271.62 267.01 539860000 56899000 62887000 54692000 1385700 0 0 66911000 79009000 62768000 5315400 0 0 26227000 21014000 25951000 0 0 0 29323000 22555000 24927000 0 0 0 7281 1662 7103 135283;135284;135285;135286;135287;135288;135289;135290;135291;135292;135293;135294;135295;135296 83316;83317;83318;83319;83320;83321;83322;83323;83324;83325;83326;83327;83328 83317 13 GGEVLTR Unmodified 730.39735 0.39735263 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.206 12.642 2 0.0018451 2916 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 122.79 22.871 2988500000 69793000 58650000 54098000 0 0 0 1299600000 0 1276900000 59499000 52124000 41191000 0 18914000 16396000 4038200 4975400 4644600 0 0 0 10065000 9153000 8505500 7282 1088 7104 135297;135298;135299;135300;135301;135302;135303;135304;135305;135306;135307;135308;135309;135310;135311;135312 83329;83330;83331;83332;83333 83330 5 GGFESYQER Unmodified 1071.4621 0.46213773 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.649 16.456 2 0.0074119 5589 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 67.464 63.53 138690000 19957000 21734000 17470000 0 0 0 18851000 14325000 17822000 0 0 0 3857400 3192700 2610000 0 0 0 6036900 6256500 6571800 0 0 0 7283 1174 7105 135313;135314;135315;135316;135317;135318;135319;135320;135321;135322;135323;135324 83334;83335;83336 83336 3 GGFSSSSGYELAK Unmodified 1288.5935 0.59354583 131 P06846 ebgR HTH-type transcriptional regulator EbgR yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 22.734 22.183 2 0.01412 9278 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 57.293 45.803 57979000 6801800 0 10533000 0 0 0 6657600 6100500 0 0 0 0 5255000 5830200 0 0 0 0 7477900 9323100 0 0 0 0 7284 131 7106 135325;135326;135327;135328;135329;135330;135331;135332 83337;83338 83338 1 GGFTVELNGIR Unmodified 1161.6142 0.6142217 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.086 35.402 2 2.6888E-05 17218 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.91 142.53 1355900000 126710000 117490000 123550000 14133000 14291000 14570000 84477000 77525000 80909000 31463000 33416000 32465000 73181000 61526000 51826000 41421000 29911000 28129000 96659000 88311000 81195000 18208000 16760000 17746000 7285 990 7107 135333;135334;135335;135336;135337;135338;135339;135340;135341;135342;135343;135344;135345;135346;135347;135348;135349;135350;135351;135352;135353;135354;135355;135356;135357;135358;135359;135360 83339;83340;83341;83342;83343;83344;83345;83346;83347;83348;83349;83350;83351;83352;83353;83354;83355 83343 15 GGGAALTR Unmodified 701.38204 0.38203692 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 10.947 11.51 2 0.060521 2700 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 62.659 25.958 1003900000 0 0 0 0 0 0 359880000 238700000 0 4161600 15630000 0 202240000 178670000 0 0 0 0 0 0 0 0 4591800 0 7286 382 7108 135361;135362;135363;135364;135365;135366;135367 83356 83356 0 GGGDETFVQGR Unmodified 1121.5102 0.51015055 413 P0A8A2 yeeN Probable transcriptional regulatory protein YeeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.344 16.104 2 2.3769E-14 5430 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 214.12 207.67 2704200000 116130000 135610000 117930000 846820 627590 686590 330520000 323550000 298590000 0 881690 1001200 224830000 182170000 211570000 0 0 0 279010000 243730000 236500000 0 0 0 7287 413 7109 135368;135369;135370;135371;135372;135373;135374;135375;135376;135377;135378;135379;135380;135381;135382;135383;135384 83357;83358;83359;83360;83361;83362;83363;83364;83365;83366;83367;83368 83362 12 GGGELGQQWYEDGK Unmodified 1522.6688 0.66883604 1251 P24555 ptrB Protease 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.049 26.878 2 3.129E-08 12154 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.23 149.23 63207000 9259900 9932000 7394700 0 0 0 4690200 5470000 6253300 0 0 0 3620800 3341200 0 0 0 0 3998600 5336000 3910300 0 0 0 7288 1251 7110 135385;135386;135387;135388;135389;135390;135391;135392;135393;135394;135395 83369;83370 83370 2 GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unmodified 2382.9446 0.94456998 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 14.159 14.603 2;3 1.4245E-17 3795 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 217.35 159.76 358120000 0 0 0 6069200 7985800 9200900 0 0 0 86524000 94250000 87831000 0 0 0 0 0 0 0 0 0 20786000 21018000 24459000 + 7289 11 7111 135396;135397;135398;135399;135400;135401;135402;135403;135404;135405;135406;135407;135408;135409;135410;135411;135412;135413 83371;83372;83373;83374;83375;83376;83377;83378;83379;83380;83381;83382;83383;83384;83385;83386;83387 83375 17 GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unmodified 2704.1538 0.15383448 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 3 2 2 2 43.06 40.879 2;3 1.08E-54 16265 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 313.08 272.12 526010000 0 0 0 5964800 6723400 7814400 0 0 0 146510000 145080000 131500000 0 0 0 0 0 0 0 0 0 30688000 27285000 24446000 + 7290 16 7112 135414;135415;135416;135417;135418;135419;135420;135421;135422;135423;135424;135425;135426;135427;135428;135429;135430;135431;135432;135433 83388;83389;83390;83391;83392;83393;83394;83395;83396;83397;83398;83399;83400;83401;83402;83403 83394 16 GGGISGQAGAIR Unmodified 1042.552 0.55195579 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.236 14.792 2 8.4786E-09 4615 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 175.91 156.2 7948700000 1082600000 964010000 1058600000 0 24974000 0 408840000 383750000 373680000 69306000 69064000 66269000 484610000 436720000 440670000 48233000 28885000 29491000 613000000 670460000 571660000 41055000 44090000 38759000 7291 378 7113 135434;135435;135436;135437;135438;135439;135440;135441;135442;135443;135444;135445;135446;135447;135448;135449;135450;135451;135452;135453;135454;135455 83404;83405;83406;83407;83408;83409;83410;83411;83412;83413;83414;83415;83416;83417;83418;83419;83420;83421;83422;83423;83424;83425 83418 21 GGGLCLGGK Unmodified 817.41162 0.41162248 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.518 16.209 2 0.0069301 4071 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 69.176 57.614 3727400000 571460000 567290000 514290000 6171400 6647800 6847400 279570000 0 0 0 0 0 218180000 215820000 189120000 1574500 0 1641700 404660000 376790000 358560000 4251300 0 4533600 7292 1444 7114 135456;135457;135458;135459;135460;135461;135462;135463;135464;135465;135466;135467;135468;135469;135470;135471;135472;135473;135474 83426;83427;83428;83429;83430;83431;83432 83430 7 GGGQWLEAMAETGCDALGLDWTTDIADAR Unmodified 3079.3651 0.36514916 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 55.617 54.16 3 0.11132 26681 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 36.311 36.311 110290000 10948000 9053000 10454000 0 0 0 6915900 0 8079900 0 0 0 12953000 10427000 10524000 0 0 0 9252300 11481000 10203000 0 0 0 7293 1332 7115 135475;135476;135477;135478;135479;135480;135481;135482;135483;135484;135485 83433 83433 0 GGGRPDMAQAGGTDAAALPAALASVK Unmodified 2352.1856 0.1855923 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 2 1 1 3 3 3 1 1 1 3 3 3 1 1 1 36.578 34.996 2;3;4 1.803E-40 17165 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 215.57 210.49 4284700000 416110000 315400000 328150000 4395500 4527900 4622900 277690000 264360000 275730000 14556000 9231600 10818000 366890000 344540000 322840000 3595800 3688600 3680400 437150000 428690000 429450000 5455100 6708900 6398000 7294 59 7116 135486;135487;135488;135489;135490;135491;135492;135493;135494;135495;135496;135497;135498;135499;135500;135501;135502;135503;135504;135505;135506;135507;135508;135509;135510;135511;135512;135513;135514;135515;135516;135517;135518;135519;135520;135521;135522;135523;135524;135525;135526;135527;135528;135529;135530;135531;135532;135533;135534 83434;83435;83436;83437;83438;83439;83440;83441;83442;83443;83444;83445;83446;83447;83448;83449;83450;83451;83452;83453;83454;83455;83456;83457;83458;83459;83460;83461;83462;83463;83464;83465;83466;83467;83468;83469;83470;83471;83472;83473 83442 40 GGGTGPHK Unmodified 709.35074 0.35073679 1973 Q47147 yafJ Putative glutamine amidotransferase YafJ yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 4.2056 4.9381 2 0.087831 725 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.787 51.787 4936500 1531300 1949600 1455600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7295 1973 7117 135535;135536;135537 83474;83475 83474 2 GGHDPKK Unmodified 737.38204 0.38203692 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4.3168 5.0255 2 0.0092385 1195 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 91.584 91.584 613630000 0 0 0 37071000 39274000 46933000 0 0 0 11452000 10367000 11786000 1998200 1661800 1600500 0 0 0 11299000 8938500 9294800 130330000 154680000 136940000 7296 939 7118 135538;135539;135540;135541;135542;135543;135544;135545;135546;135547;135548;135549;135550;135551;135552 83476;83477;83478;83479;83480;83481;83482;83483;83484;83485;83486;83487 83479 12 GGHIYNICAPAHPAR Unmodified 1632.7943 0.7943281 764 P0AD12 yeeZ Protein YeeZ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 14.393 15.179 2;3 6.0099E-15 5107 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 186.78 182.77 471540000 54561000 57553000 42761000 0 418800 308980 48714000 54783000 44320000 0 0 0 25503000 24011000 23571000 0 0 0 31549000 33911000 29579000 0 0 0 7297 764 7119 135553;135554;135555;135556;135557;135558;135559;135560;135561;135562;135563;135564;135565;135566;135567;135568;135569;135570;135571;135572;135573;135574;135575;135576;135577;135578 83488;83489;83490;83491;83492;83493;83494;83495;83496;83497;83498;83499;83500;83501 83489 12 GGHLDDEQSPDWLFTR Unmodified 1871.8438 0.84384029 1859 P76422 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 38.401 36.649 3 1.0764E-08 17788 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.29 119.39 104060000 0 0 0 0 0 0 13736000 13002000 8238700 0 0 0 6506000 7663700 6091000 0 0 0 15912000 16511000 16402000 0 0 0 7298 1859 7120 135579;135580;135581;135582;135583;135584;135585;135586;135587 83502;83503;83504;83505;83506 83503 5 GGHSGGEIHVGLGNANK Unmodified 1602.7863 0.78626584 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 1 1 3 3 3 3 3 3 3 3 3 12.325 13.16 2;3;4 3.3392E-136 3785 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 424.4 396.97 7242000000 1028200000 747390000 579650000 1218600 1123700 0 850060000 690120000 740790000 0 0 0 430860000 385770000 402510000 0 0 0 514180000 460200000 409990000 0 0 0 7299 1109 7121 135588;135589;135590;135591;135592;135593;135594;135595;135596;135597;135598;135599;135600;135601;135602;135603;135604;135605;135606;135607;135608;135609;135610;135611;135612;135613;135614;135615;135616;135617;135618;135619;135620;135621;135622;135623;135624;135625;135626;135627;135628 83507;83508;83509;83510;83511;83512;83513;83514;83515;83516;83517;83518;83519;83520;83521;83522;83523;83524;83525;83526;83527;83528;83529;83530;83531;83532;83533 83508 26 GGHTEATIDLMTLAGFKPAGVLCELTNDDGTMAR Unmodified 3561.6902 0.69018847 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.119 52.716 4 1.3473E-13 24869 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 116.04 114.16 645570000 49817000 44491000 43359000 0 0 0 84118000 0 0 0 0 0 104320000 119980000 82224000 0 0 0 6451400 0 110810000 0 0 0 7300 348 7122 135629;135630;135631;135632;135633;135634;135635;135636;135637 83534;83535;83536 83536 3 GGHVEQATFWTGLRPMTPDGTPVVGR Unmodified 2765.3708 0.37076731 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 1 2 2 2 1 1 1 1 1 2 2 2 2 2 39.959 38.174 3;4 1.9905E-15 18564 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.62 137.24 474180000 13260000 11960000 10574000 2186900 17210000 13537000 30780000 34945000 23527000 32637000 31025000 24149000 0 7729200 0 8039800 6262400 7262400 16369000 56502000 54348000 25074000 25346000 21458000 7301 252 7123 135638;135639;135640;135641;135642;135643;135644;135645;135646;135647;135648;135649;135650;135651;135652;135653;135654;135655;135656;135657;135658;135659;135660;135661;135662;135663;135664;135665;135666;135667;135668;135669;135670;135671 83537;83538;83539;83540;83541;83542;83543;83544;83545;83546;83547;83548;83549;83550;83551;83552;83553;83554;83555;83556;83557;83558;83559;83560;83561 83555 25 GGIHNSVTR Unmodified 939.48863 0.48862725 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 8.7757 9.4744 2 0.00028442 2319 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 119.21 96.974 457070000 0 17231000 13497000 929870 1764300 947580 3394600 0 0 11551000 11701000 0 42109000 33504000 30295000 186960 0 0 58756000 56569000 56866000 56652000 33495000 27621000 7302 205;1157 7124 135672;135673;135674;135675;135676;135677;135678;135679;135680;135681;135682;135683;135684;135685;135686;135687;135688;135689;135690;135691;135692 83562;83563;83564;83565;83566;83567;83568;83569;83570 83570 9 GGISFESEEAK Unmodified 1152.5299 0.52988294 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 20.502 20.846 2 1.6533E-06 8213 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.37 101.22 53463000 0 22473000 18156000 624770 0 495680 0 4580000 3786500 0 0 0 0 0 0 0 0 0 0 3347200 0 0 0 0 7303 1181 7125 135693;135694;135695;135696;135697;135698;135699;135700 83571;83572;83573;83574 83573 4 GGIYEVLAHAEK Unmodified 1285.6667 0.6666512 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.883 28.527 3 0.0006723 12773 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 60.628 54.845 479730000 19484000 20171000 19849000 0 0 0 53571000 55606000 54034000 0 0 0 25306000 27449000 21868000 0 0 0 59698000 55592000 67100000 0 0 0 7304 51 7126 135701;135702;135703;135704;135705;135706;135707;135708;135709;135710;135711;135712 83575;83576;83577;83578;83579;83580;83581;83582;83583;83584 83582 10 GGIYLYPSTASHPDGK Unmodified 1661.8049 0.80493559 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 24.285 23.333 2;3 1.2645E-08 9752 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.85 121.72 2934300000 144750000 146030000 119860000 3710700 4209500 3885300 294080000 267910000 252180000 4304000 5838300 4610200 258920000 246350000 218220000 2136700 1304400 0 319080000 342640000 270520000 8013700 7635700 8114400 7305 499 7127 135713;135714;135715;135716;135717;135718;135719;135720;135721;135722;135723;135724;135725;135726;135727;135728;135729;135730;135731;135732;135733;135734;135735;135736;135737;135738;135739;135740;135741;135742;135743;135744;135745;135746;135747;135748;135749;135750;135751;135752;135753;135754 83585;83586;83587;83588;83589;83590;83591;83592;83593;83594;83595;83596;83597;83598;83599;83600;83601;83602;83603;83604;83605;83606;83607;83608;83609 83607 24 GGKEPNYSAK Unmodified 1049.5142 0.5141733 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 7.8662 8.6457 2;3 0.01687 1214 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 64.711 57.491 29580000 3321000 861700 2547400 1777700 1260700 1157800 0 4140500 2224000 0 0 0 804100 400500 910880 0 2475300 0 2438200 0 3202600 2057300 0 0 7306 639 7128 135755;135756;135757;135758;135759;135760;135761;135762;135763;135764;135765;135766;135767;135768;135769;135770;135771;135772 83610;83611;83612;83613;83614;83615;83616 83610 6 GGKGSITEQLLNAR Unmodified 1442.7841 0.78414057 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 24.434 23.509 3 0.024284 10646 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 34.444 31.41 208950000 0 0 0 0 1909100 1845800 0 23741000 24358000 0 0 0 31445000 24728000 21194000 0 0 0 25936000 27430000 26359000 0 0 0 7307 38 7129 135773;135774;135775;135776;135777;135778;135779;135780;135781;135782 83617;83618 83617 0 GGLAGSTVLDAK Unmodified 1087.5873 0.58733824 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 23.117 22.477 2 7.9688E-05 9945 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 99.815 85.891 1485700000 188140000 170130000 157400000 0 0 0 0 0 164410000 0 0 0 155450000 134230000 136480000 0 0 0 123330000 131530000 124600000 0 0 0 7308 671 7130 135783;135784;135785;135786;135787;135788;135789;135790;135791;135792 83619;83620;83621;83622;83623;83624;83625;83626;83627 83619 7 GGLDINPWR Unmodified 1026.5247 0.52467841 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.358 35.684 2 0.049581 17216 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.981 52.527 121340000 14025000 12722000 12359000 0 0 0 10213000 10693000 8912200 0 0 0 9870100 8411100 6864500 0 0 0 9703600 8548500 9019500 0 0 0 7309 1966 7131 135793;135794;135795;135796;135797;135798;135799;135800;135801;135802;135803;135804 83628;83629;83630;83631 83630 0 GGLDPLLK Unmodified 811.48035 0.48035398 704 P0AC62 grxC Glutaredoxin-3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.219 28.825 2 0.002784 12869 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.602 65.488 4580100000 554920000 507230000 464470000 1672700 1302200 1915500 424080000 415830000 402660000 2467000 2100000 1773600 276530000 258910000 258740000 1486600 1048100 1187100 339820000 359030000 298930000 1725800 1166200 1066700 7310 704 7132 135805;135806;135807;135808;135809;135810;135811;135812;135813;135814;135815;135816;135817;135818;135819;135820;135821;135822;135823;135824;135825;135826;135827;135828 83632;83633;83634;83635;83636;83637;83638;83639;83640;83641;83642;83643 83641 12 GGLFDDSK Unmodified 837.38685 0.38684752 1523 P39315 qorB Quinone oxidoreductase 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.265 20.655 2 0.0097902 8110 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 79.469 55.282 114810000 14804000 10484000 11664000 0 0 0 14617000 11437000 14557000 0 0 0 6436300 5968900 4176400 0 0 0 8818100 6456000 5390100 0 0 0 7311 1523 7133 135829;135830;135831;135832;135833;135834;135835;135836;135837;135838;135839;135840 83644;83645;83646;83647;83648;83649;83650 83646 7 GGLGLAEDTSDAAISCQQVGPIELSDR Unmodified 2758.308 0.30795186 842 P0AE91 creA Protein CreA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.095 45.559 3 1.7759E-05 18398 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 74.819 71.663 166360000 18820000 13587000 13045000 2325600 3854700 3082100 13581000 14255000 13054000 4381000 4502900 5181100 6617400 7178500 8363700 0 0 0 8369800 11774000 10816000 0 0 3568600 7312 842 7134 135841;135842;135843;135844;135845;135846;135847;135848;135849;135850;135851;135852;135853;135854;135855;135856;135857;135858;135859 83651;83652;83653;83654;83655;83656 83651 6 GGLGNLMK Unmodified 788.42146 0.42145889 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 22.403 21.975 2 0.00090814 9440 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 118.06 59.395 4155600000 237380000 195120000 193260000 22203000 21890000 22434000 274360000 274330000 215790000 176480000 281890000 312850000 183210000 158410000 163960000 110380000 121620000 139520000 236280000 228940000 270100000 125450000 102600000 87117000 7313 416 7135 135860;135861;135862;135863;135864;135865;135866;135867;135868;135869;135870;135871;135872;135873;135874;135875;135876;135877;135878;135879;135880;135881;135882;135883;135884;135885 83657;83658;83659;83660;83661;83662;83663;83664;83665;83666;83667;83668;83669;83670;83671;83672;83673;83674;83675;83676;83677;83678;83679;83680 83665 23 GGLGNLMK Oxidation (M) 804.41637 0.41637351 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 2 1 1 1 1 1 1 1 1 14.377 14.95 2 0.072429 4152 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 52.683 43.911 94686000 7117400 8144400 0 1387500 0 1509800 0 0 0 10505000 8564700 11516000 0 0 3610500 0 0 0 5143100 5314000 6551300 7752100 10259000 7311900 7314 416 7135 135886;135887;135888;135889;135890;135891;135892;135893;135894;135895;135896;135897;135898;135899;135900 83681;83682;83683 83681 1 GGLHPFPWR Unmodified 1065.5508 0.55083358 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 2 2 2 1 2 2 2 2 1 1 2 29.038 27.625 2;3 0.00022178 12657 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.752 86.774 486740000 49945000 45129000 44267000 2698500 2573300 2338500 26310000 32134000 30047000 5889100 3864800 5604900 27303000 18950000 28347000 0 0 0 46758000 48396000 52032000 4117200 3234700 6796000 7315 1909 7136 135901;135902;135903;135904;135905;135906;135907;135908;135909;135910;135911;135912;135913;135914;135915;135916;135917;135918;135919;135920;135921;135922;135923;135924;135925;135926;135927;135928;135929;135930;135931;135932;135933;135934;135935 83684;83685;83686;83687;83688;83689;83690;83691;83692;83693;83694;83695;83696;83697;83698;83699;83700;83701 83693 18 GGLNLTNEELAQTFTEWNNGELSSYLIDITK Unmodified 3469.6889 0.68890937 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 55.745 54.266 3 4.6546E-25 25752 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 176.85 175.18 625190000 42627000 0 0 0 0 0 0 48832000 61459000 0 0 0 88471000 62816000 77652000 0 0 0 105870000 58432000 79035000 0 0 0 7316 24 7137 135936;135937;135938;135939;135940;135941;135942;135943;135944 83702;83703;83704;83705;83706;83707;83708 83708 7 GGLPGCVEVCPAGAVIFGTR Unmodified 2015.9921 0.99210121 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 49.202 47.83 2 2.5648E-14 23625 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.46 136.76 123570000 0 0 2583100 0 0 0 19164000 18682000 16122000 0 0 0 14304000 13300000 10399000 0 0 0 6788300 12057000 10172000 0 0 0 7317 600 7138 135945;135946;135947;135948;135949;135950;135951;135952;135953;135954 83709;83710;83711;83712;83713;83714 83710 6 GGLVPGALLAR Unmodified 1022.6237 0.62366417 538 P0A9M5 gpt Xanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.737 36.054 2 0.10997 17363 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 41.448 38.769 2183600000 179080000 178460000 145130000 665790 583190 762450 162120000 181680000 172460000 0 0 0 169060000 153270000 154650000 0 0 0 239480000 229170000 217040000 0 0 0 7318 538 7139 135955;135956;135957;135958;135959;135960;135961;135962;135963;135964;135965;135966;135967;135968;135969 83715;83716;83717 83717 0 GGLVQVPEKPGLGVEIDMDQVMK Unmodified 2438.2549 0.25491742 881 P0AES2 gudD Glucarate dehydratase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 46.083 44.631 3 0.12899 22155 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 25.155 20.398 123930000 19862000 15806000 20494000 0 0 0 0 12459000 11428000 0 0 0 12343000 11297000 11345000 0 0 0 0 8892400 0 0 0 0 7319 881 7140 135970;135971;135972;135973;135974;135975;135976;135977;135978 83718 83718 1 GGNFFQPTILVDVPANAK Unmodified 1886.989 0.98904797 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 2 1 1 2 1 2 1 2 1 2 2 2 1 1 1 50.29 48.856 2;3 2.535E-09 23658 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 153.75 148.37 977410000 210980000 167500000 186290000 0 0 748730 80268000 70583000 71688000 5417000 1909600 4354900 19722000 17875000 15677000 0 0 0 40479000 38982000 39036000 1860700 1897000 2142800 7320 1258 7141 135979;135980;135981;135982;135983;135984;135985;135986;135987;135988;135989;135990;135991;135992;135993;135994;135995;135996;135997;135998;135999;136000;136001;136002;136003;136004;136005;136006 83719;83720;83721;83722;83723;83724;83725;83726;83727;83728;83729;83730 83724 12 GGNLMVLPLDQMLK Unmodified 1527.8153 0.81530604 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.847 52.55 2 1.627E-06 25715 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.92 118 542230000 27033000 22897000 20946000 5483000 7035700 9136300 43752000 35674000 34967000 16636000 20247000 24095000 42787000 39806000 0 4890400 0 5366600 57720000 45677000 54310000 11518000 0 12252000 7321 649 7142 136007;136008;136009;136010;136011;136012;136013;136014;136015;136016;136017;136018;136019;136020;136021;136022;136023;136024;136025;136026;136027;136028;136029 83731;83732;83733;83734;83735;83736;83737;83738;83739;83740;83741;83742;83743;83744;83745;83746;83747;83748;83749;83750 83740 20 GGPLADGIVITPSHNPPEDGGIK Unmodified 2240.1437 0.14371071 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.47 32.031 3 3.6751E-07 15193 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 108.25 105.16 457610000 43195000 27838000 30186000 0 0 0 45845000 47680000 39382000 0 0 0 30359000 22506000 26415000 0 0 0 47920000 47398000 48888000 0 0 0 7322 1450 7143 136030;136031;136032;136033;136034;136035;136036;136037;136038;136039;136040;136041 83751;83752;83753;83754;83755;83756;83757;83758;83759;83760;83761;83762 83755 12 GGPVVWLSEADAK Unmodified 1327.6772 0.67721588 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.189 36.574 2 9.831E-07 14444 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 135.55 126.19 981440000 21613000 24544000 21600000 4304000 4127300 4440600 67498000 70821000 63508000 21512000 20836000 22935000 47209000 45035000 42704000 6994200 4395400 3191700 74563000 70961000 68495000 93570000 87027000 89559000 7323 205 7144 136042;136043;136044;136045;136046;136047;136048;136049;136050;136051;136052;136053;136054;136055;136056;136057;136058;136059;136060;136061;136062;136063;136064;136065 83763;83764;83765;83766;83767;83768;83769;83770;83771;83772;83773 83764 11 GGQFRPEFLR Unmodified 1205.6305 0.63054046 1912 P77526 yfcG Disulfide-bond oxidoreductase YfcG yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.087 24.09 3 0.00023683 11074 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.355 81.592 237490000 49217000 46743000 38022000 0 0 0 16330000 18378000 21155000 0 0 0 7483200 6922700 6890100 0 0 0 8411100 8877800 9057200 0 0 0 7324 1912 7145 136066;136067;136068;136069;136070;136071;136072;136073;136074;136075;136076;136077 83774;83775;83776;83777 83774 4 GGQHSGGNFK Unmodified 987.45224 0.45224175 1176 P56614;P21361 ymdF;yciG Uncharacterized protein YmdF;Uncharacterized protein YciG yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 5.7921 6.6023 2 1.8577E-05 1439 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.17 107.11 204440000 28629000 31217000 29660000 0 0 0 35219000 38602000 41113000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7325 1176 7146 136078;136079;136080;136081;136082;136083 83778;83779;83780;83781;83782;83783 83783 6 GGRDQGPPDLDDIFR Unmodified 1656.7856 0.78559713 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.352 36.653 3 0.10503 14861 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 23.226 20.923 19409000 0 0 0 1527800 1483400 1707600 0 0 0 2255900 2231400 2404600 0 0 0 0 967720 841950 0 0 0 2599900 1550800 1837600 7326 649 7147 136084;136085;136086;136087;136088;136089;136090;136091;136092;136093;136094 83784 83784 0 GGRPALR Unmodified 725.42966 0.42965581 974 P0AFZ3 sspB Stringent starvation protein B yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 10.24 11.094 2 0.044412 2288 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 71.378 48.756 159790000 14234000 0 9925500 0 0 0 0 0 0 0 0 0 20828000 17932000 13483000 0 0 0 30368000 27678000 25338000 0 0 0 7327 974 7148 136095;136096;136097;136098;136099;136100;136101;136102 83785 83785 1 GGSDFDPK Unmodified 821.35555 0.35554739 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.209 13.001 2 0.054555 3706 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.815 50.132 331530000 76806000 99181000 74284000 0 0 0 14939000 13774000 15352000 0 0 0 7990200 0 0 0 0 0 9148700 9205600 10850000 0 0 0 7328 26 7149 136103;136104;136105;136106;136107;136108;136109;136110;136111;136112 83786;83787;83788 83787 3 GGSDYTAALLAEALHASR Unmodified 1801.8959 0.89587586 191 P08660 lysC Lysine-sensitive aspartokinase 3 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 47.704 46.315 3 0.00010591 22952 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 52.784 47.004 102310000 8205400 9275000 10396000 0 0 0 15547000 14477000 0 0 0 0 7984800 6509300 5329400 0 0 0 6719200 9454600 8412800 0 0 0 7329 191 7150 136113;136114;136115;136116;136117;136118;136119;136120;136121;136122;136123 83789;83790 83790 2 GGSEELYK Unmodified 881.41306 0.41306227 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.492 13.345 2 0.00098544 3856 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.78 76.412 4243500000 570490000 549090000 598640000 0 0 2036400 286350000 287970000 326800000 0 0 0 243930000 241420000 223320000 0 0 0 323400000 307250000 282830000 0 0 0 7330 391 7151 136124;136125;136126;136127;136128;136129;136130;136131;136132;136133;136134;136135;136136 83791;83792;83793;83794;83795;83796;83797;83798;83799;83800;83801 83792 11 GGSEELYKK Unmodified 1009.508 0.50802529 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.781 11.603 2 0.00014171 2865 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.15 111.13 372920000 78844000 64945000 0 0 0 0 28717000 28295000 27658000 0 0 0 19171000 20598000 18982000 0 0 0 29919000 29705000 26091000 0 0 0 7331 391 7152 136137;136138;136139;136140;136141;136142;136143;136144;136145;136146;136147;136148 83802;83803;83804;83805;83806;83807 83805 6 GGSEEPMDLFK Unmodified 1208.5383 0.53833914 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.396 34.839 2 9.4054E-05 16663 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 120.99 112.46 634040000 57553000 49090000 56973000 0 0 0 72762000 70428000 67982000 0 0 0 33159000 33763000 29168000 0 0 0 53710000 54750000 54704000 0 0 0 7332 1298 7153 136149;136150;136151;136152;136153;136154;136155;136156;136157;136158;136159;136160 83808;83809;83810;83811;83812;83813;83814;83815;83816;83817;83818;83819 83815 12 GGSGGGGSISGGGYGSGGGSGGR Unmodified 1740.7412 0.74116614 17 CON__P35908 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 12.212 12.723 2 5.8622E-16 2832 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 156.49 153.98 33619000 0 0 0 1716800 2123400 3252900 0 0 0 3854600 3909500 2727400 0 0 0 0 0 0 0 0 0 4931400 5571600 5531100 + 7333 17 7154 136161;136162;136163;136164;136165;136166;136167;136168;136169 83820;83821 83821 2 GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unmodified 3222.2743 0.27429656 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 15.06 15.482 3 2.9855E-38 4188 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 194.9 194.9 190460000 0 0 0 3090700 3400800 3164300 0 0 0 63942000 44395000 42472000 0 0 0 0 0 0 0 0 0 8314600 11615000 10065000 + 7334 16 7155 136170;136171;136172;136173;136174;136175;136176;136177;136178 83822;83823;83824;83825;83826;83827;83828;83829;83830 83824 9 GGSGGSYGGGGSGGGYGGGSGSR Unmodified 1790.7204 0.72043069 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 2 1 1 11.621 12.094 2;3 9.286E-44 2610 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 316.86 109.22 456750000 0 0 0 7225700 11169000 8990100 0 0 0 124350000 121760000 98853000 0 0 0 5195600 0 0 0 0 0 28753000 24043000 26410000 + 7335 16 7156 136179;136180;136181;136182;136183;136184;136185;136186;136187;136188;136189;136190;136191;136192;136193;136194 83831;83832;83833;83834;83835;83836;83837;83838;83839;83840 83831 10 GGSGGSYGR Unmodified 796.34638 0.34637969 16 CON__P35527 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 10.087 10.436 2 1.1503E-07 1876 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 180.7 136.01 433260000 0 0 0 0 0 25293 0 0 0 123400000 109930000 94659000 0 0 0 0 0 0 0 0 0 41492000 33299000 30452000 + 7336 16 7157 136195;136196;136197;136198;136199;136200;136201 83841;83842;83843;83844;83845 83841 5 GGSGNFAEDR Unmodified 1008.4261 0.42608657 1176 P56614;P21361 ymdF;yciG Uncharacterized protein YmdF;Uncharacterized protein YciG yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.748 12.557 2 2.2238E-05 3415 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.52 141.29 304840000 52785000 42039000 37672000 0 0 0 47080000 56541000 53568000 0 0 0 0 6327200 3636000 0 0 0 0 0 5196100 0 0 0 7337 1176 7158 136202;136203;136204;136205;136206;136207;136208;136209;136210 83846;83847;83848 83846 3 GGSHVHVFSPNGER Unmodified 1478.7015 0.70147357 1368 P31455 yidR Uncharacterized protein YidR yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 55.107 53.771 2 0.15799 19695 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 33.961 17.736 39520000 0 0 0 13359000 9956500 12168000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4036200 0 7338 1368 7159 136211;136212;136213;136214 83849 83849 1 GGSISGGGYGSGGGK Unmodified 1196.5422 0.54217896 17 CON__P35908 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 2 2 1 1 1 11.781 12.102 2 1.3701E-06 2659 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 113.22 111.74 112280000 0 0 0 5381300 6517200 5381600 0 0 0 4081800 0 4688300 0 0 0 9074600 19842000 17853000 0 0 0 10076000 17406000 11981000 + 7339 17 7160 136215;136216;136217;136218;136219;136220;136221;136222;136223;136224;136225;136226;136227 83850;83851;83852;83853;83854;83855;83856 83852 7 GGSPVPYDR Unmodified 946.45084 0.45084476 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.923 15.501 2 0.0005676 5166 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.91 96.497 3276700000 281490000 295800000 272080000 1262500 961500 1218100 430160000 464600000 433260000 1692900 2091600 1752600 163210000 150040000 147470000 0 391160 550430 224140000 202790000 199650000 1311300 0 793450 7340 320 7161 136228;136229;136230;136231;136232;136233;136234;136235;136236;136237;136238;136239;136240;136241;136242;136243;136244;136245;136246;136247;136248;136249 83857;83858;83859;83860;83861;83862;83863;83864 83862 8 GGTFLGSAR Unmodified 864.44537 0.44536545 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.293 17.816 2 0.00024392 6324 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.74 86.557 3864400000 253820000 224390000 221830000 0 1333200 1336300 609280000 557880000 564500000 2728700 2215600 2009100 213090000 211930000 181150000 0 0 1408900 278720000 271500000 260440000 2091400 1309300 1457400 7341 320 7162 136250;136251;136252;136253;136254;136255;136256;136257;136258;136259;136260;136261;136262;136263;136264;136265;136266;136267;136268;136269;136270 83865;83866;83867;83868;83869;83870;83871;83872;83873;83874 83870 10 GGTLAGTTTLNNGAILTLSGK Unmodified 1959.0637 0.063669474 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 41.566 40.101 2 5.0894E-08 18701 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 111.64 103.23 21126000 0 0 0 0 0 0 0 0 0 0 0 0 7645700 8486100 4994000 0 0 0 0 0 0 0 0 0 7342 1513 7163 136271;136272;136273 83875 83875 1 GGTPYGATTIAGGDGSR Unmodified 1536.7168 0.71684887 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 3 1 1 1 1 2 1 2 20.676 20.908 2;3 2.7069E-10 8175 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 174.21 170.32 11352000000 1160600000 1210900000 1141000000 0 0 0 2045900000 2028600000 2142300000 4292500 0 0 271520000 257920000 278500000 0 0 0 287320000 279070000 244440000 0 0 0 7343 428 7164 136274;136275;136276;136277;136278;136279;136280;136281;136282;136283;136284;136285;136286;136287;136288;136289;136290;136291;136292;136293;136294;136295;136296;136297;136298;136299 83876;83877;83878;83879;83880;83881;83882;83883;83884;83885;83886;83887;83888;83889;83890;83891;83892;83893;83894;83895;83896;83897;83898;83899;83900;83901 83885 26 GGTRIPISGIAGDQQAALFGQLCVK Unmodified 2556.3482 0.34824095 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.531 44.133 3 0.00014407 18069 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 69.619 66.933 36524000 0 0 0 2551100 1467600 1906500 0 0 0 2598300 3018900 3041300 0 0 0 4416600 2907100 3169300 0 0 0 4311900 3123300 4011700 7344 239 7165 136300;136301;136302;136303;136304;136305;136306;136307;136308;136309;136310;136311 83902 83902 1 GGTTHLGLPVFNTVR Unmodified 1567.8471 0.84707518 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 1 34.773 33.177 2;3 1.7001E-08 15681 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 172.11 167.82 10205000000 1241400000 1194500000 1082300000 2864500 4461800 5090200 532800000 472480000 488490000 3081900 4514100 0 544010000 533690000 530310000 0 0 0 1199600000 1178100000 1178300000 2442800 2565600 3969200 7345 1013 7166 136312;136313;136314;136315;136316;136317;136318;136319;136320;136321;136322;136323;136324;136325;136326;136327;136328;136329;136330;136331;136332;136333;136334;136335;136336;136337;136338;136339;136340;136341;136342;136343;136344;136345 83903;83904;83905;83906;83907;83908;83909;83910;83911;83912;83913;83914;83915;83916;83917;83918;83919;83920;83921;83922;83923;83924;83925;83926;83927;83928;83929 83915 27 GGTTVIAFVEDPDGYK Unmodified 1667.8043 0.80426689 707 P0AC81 gloA Lactoylglutathione lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.576 42.061 2 5.1295E-10 20362 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 142.08 125.06 556690000 52873000 44851000 43315000 0 0 0 51750000 60275000 59784000 0 0 0 38026000 35589000 35638000 0 0 0 46380000 42604000 45601000 0 0 0 7346 707 7167 136346;136347;136348;136349;136350;136351;136352;136353;136354;136355;136356;136357 83930;83931;83932;83933;83934;83935;83936;83937;83938;83939;83940;83941 83935 12 GGTTVIAFVEDPDGYKIELIEEK Unmodified 2522.2792 0.27920114 707 P0AC81 gloA Lactoylglutathione lyase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 50.998 49.714 3 9.221E-05 24692 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.373 81.197 149270000 0 8210000 0 0 0 0 20403000 16964000 20024000 0 0 0 9973400 18994000 15398000 0 0 0 21607000 0 17694000 0 0 0 7347 707 7168 136358;136359;136360;136361;136362;136363;136364;136365;136366 83942;83943;83944;83945;83946;83947;83948;83949 83942 8 GGTVLNIPQQLILPDTVHEGIVINSAEMR Unmodified 3113.6543 0.65431896 617 P0AAX8 ybiS Probable L,D-transpeptidase YbiS yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 2 2 2 2 2 2 2 1 2 52.968 51.548 3;4 4.0392E-23 25533 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 170.82 168.73 1548700000 116600000 131490000 135390000 0 1135400 0 127590000 134590000 117570000 0 0 0 126780000 120310000 115100000 0 0 0 140240000 131520000 150360000 0 0 0 7348 617 7169 136367;136368;136369;136370;136371;136372;136373;136374;136375;136376;136377;136378;136379;136380;136381;136382;136383;136384;136385;136386;136387;136388;136389 83950;83951;83952;83953;83954;83955;83956;83957;83958;83959;83960;83961 83951 12 GGVDVLVATPGR Unmodified 1139.6299 0.62987176 1275 P25888 rhlE ATP-dependent RNA helicase RhlE yes yes 0 0 0 By MS/MS By matching 1 1 29.623 28.468 2 0.1098 13331 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 38.714 31.819 8884800 3864100 0 5020700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7349 1275 7170 136390;136391 83962 83962 1 GGVIFSVADQFGIPIR Unmodified 1674.9093 0.90934108 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.52 53.383 2 6.7543E-10 21290 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 137.17 130.04 203230000 26090000 0 26041000 2352100 3272900 2655000 0 0 0 15804000 14417000 10937000 0 0 0 8008200 4583700 5155900 32921000 0 27794000 9586300 7800400 5807300 7350 1052 7171 136392;136393;136394;136395;136396;136397;136398;136399;136400;136401;136402;136403;136404;136405;136406;136407 83963;83964 83964 1 GGVIPGEYIPAVDK Unmodified 1413.7504 0.75038083 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.031 36.486 2 5.0215E-05 17650 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 88.596 82.815 18836000000 1697000000 1588700000 1456900000 8739100 7973000 9158000 1496000000 1442500000 1424200000 13071000 0 10936000 1454500000 1302500000 1221600000 6572600 4672500 3247300 2064600000 1832500000 1772300000 0 9029700 9668000 7351 264 7172 136408;136409;136410;136411;136412;136413;136414;136415;136416;136417;136418;136419;136420;136421;136422;136423;136424;136425;136426;136427;136428;136429;136430 83965;83966;83967;83968;83969;83970;83971;83972;83973;83974;83975;83976;83977;83978;83979;83980;83981;83982;83983;83984;83985;83986;83987;83988 83978 24 GGVIPGEYIPAVDKGIQEQLK Unmodified 2210.1947 0.19468365 264 P0A6M8 fusA Elongation factor G yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 42.26 40.228 3 0.0053678 15831 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 44.587 44.542 32936000 0 0 0 4605800 5548400 6065300 0 0 0 0 3766800 3255200 0 0 0 0 0 0 0 0 0 3441900 2892800 3360300 7352 264 7173 136431;136432;136433;136434;136435;136436;136437;136438 83989;83990;83991 83989 2 GGVLAGEEEAESIVALAQR Unmodified 1897.9745 0.97452012 881 P0AES2 gudD Glucarate dehydratase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 1 2 2 2 2 2 2 50.307 48.905 2;3 4.1248E-08 23929 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.02 110.76 167920000 23277000 12361000 18892000 0 0 0 16196000 16788000 12729000 0 0 0 11210000 11304000 14719000 0 0 0 11362000 9134400 9943600 0 0 0 7353 881 7174 136439;136440;136441;136442;136443;136444;136445;136446;136447;136448;136449;136450;136451;136452;136453;136454;136455;136456;136457;136458;136459;136460;136461 83992;83993;83994;83995 83993 4 GGVLEVYMGHYMR Unmodified 1510.7061 0.70608995 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.09 35.417 3 4.4411E-06 17128 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.46 103.63 479800000 121900000 131220000 118520000 0 0 0 18817000 21711000 15647000 0 0 0 7858900 5923300 9131700 0 0 0 10753000 9104900 9209400 0 0 0 7354 1160 7175 136462;136463;136464;136465;136466;136467;136468;136469;136470;136471;136472;136473 83996;83997;83998;83999;84000 83997 5 GGVNAVVHEFAAACGCGIELSEAALPVKPAVR Unmodified 3248.6434 0.64343669 1240 P24193 hypE Hydrogenase isoenzymes formation protein HypE yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.113 47.694 4 2.1665E-10 22242 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 106.17 104.29 154910000 6150600 6673500 0 0 0 0 0 20957000 20781000 4542100 4577500 5581900 14664000 15703000 0 0 0 0 16126000 19019000 13139000 0 4420100 2575200 7355 1240 7176 136474;136475;136476;136477;136478;136479;136480;136481;136482;136483;136484;136485;136486;136487 84001;84002;84003;84004;84005 84005 4 GGVNDLESVVK Unmodified 1115.5823 0.58225287 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.599 27.321 2 0.0005545 12577 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.308 69.272 477240000 30888000 23627000 19921000 3182800 2675500 2189800 41493000 51266000 43783000 7425000 7098300 6722200 33338000 30390000 28279000 2434200 1713300 1613900 43081000 39951000 44932000 3176500 4947200 3113000 7356 656 7177 136488;136489;136490;136491;136492;136493;136494;136495;136496;136497;136498;136499;136500;136501;136502;136503;136504;136505;136506;136507;136508;136509;136510;136511 84006;84007;84008;84009;84010;84011;84012;84013;84014;84015;84016;84017;84018;84019;84020 84013 11 GGVNVAAGTGISNYINTIPVEEQPEYPGNLELER Unmodified 3599.7744 0.77437033 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 1 1 2 1 1 2 2 2 2 1 2 2 2 2 52.841 51.479 3;4 3.586E-19 18710 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 152.64 150.93 1401100000 27266000 37487000 19620000 209090000 201920000 212830000 28080000 21712000 32517000 5908800 0 10483000 27961000 26266000 28448000 0 0 0 45532000 33327000 44463000 111450000 119140000 157560000 7357 939 7178 136512;136513;136514;136515;136516;136517;136518;136519;136520;136521;136522;136523;136524;136525;136526;136527;136528;136529;136530;136531;136532;136533;136534;136535;136536;136537;136538;136539;136540;136541;136542;136543;136544 84021;84022;84023;84024;84025;84026;84027;84028;84029;84030;84031;84032 84027 12 GGVNVAAGTGISNYINTIPVEEQPEYPGNLELERR Unmodified 3755.8755 0.87548136 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 49.434 48.068 3;4 4.3904E-84 17277 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 290.94 289.62 488710000 0 0 0 99264000 105280000 98306000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57182000 61642000 67032000 7358 939 7179 136545;136546;136547;136548;136549;136550;136551;136552;136553;136554;136555;136556 84033;84034;84035;84036;84037;84038;84039;84040;84041;84042;84043;84044 84040 12 GGVPVCWPWFGPAAQQGLPAHGFAR Unmodified 2662.3016 0.30156553 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 51.877 50.625 3 8.904E-16 25084 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.96 150.93 2517500000 138540000 129780000 117800000 866580 0 0 290070000 296580000 304070000 0 0 0 169890000 178030000 158380000 0 0 0 252690000 253840000 227000000 0 0 0 7359 1510 7180 136557;136558;136559;136560;136561;136562;136563;136564;136565;136566;136567;136568;136569 84045;84046;84047;84048;84049;84050;84051;84052;84053;84054;84055;84056 84045 12 GGVSHWLEGR Unmodified 1096.5414 0.5413911 1871 P76550 yffS Uncharacterized protein YffS yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 1 1 19.977 20.372 2;3 0.013583 7822 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 76.221 61.707 133070000 20374000 21238000 19838000 2038100 2588100 2954000 6977900 4769000 6257900 1706100 0 0 3179200 2533600 2638600 0 0 0 6414300 18435000 3485400 3141600 2899400 1603300 7360 1871 7181 136570;136571;136572;136573;136574;136575;136576;136577;136578;136579;136580;136581;136582;136583;136584;136585;136586;136587;136588;136589;136590;136591;136592;136593;136594 84057;84058;84059 84059 3 GGVSLRPGDGVIHSWLNR Unmodified 1919.0126 0.012577377 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 1 2 2 4 4 3 2 2 2 4 4 4 2 2 2 4 4 3 2 2 2 34.158 32.696 2;3;4 3.5425E-55 15376 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 284.51 270.48 13942000000 2127600000 1894700000 1873200000 5129800 14094000 15203000 765770000 754570000 715920000 9700900 9918900 8004600 724210000 670130000 679430000 6838900 7532900 10380000 1171200000 1297100000 1139600000 12176000 13826000 15241000 7361 1444 7182 136595;136596;136597;136598;136599;136600;136601;136602;136603;136604;136605;136606;136607;136608;136609;136610;136611;136612;136613;136614;136615;136616;136617;136618;136619;136620;136621;136622;136623;136624;136625;136626;136627;136628;136629;136630;136631;136632;136633;136634;136635;136636;136637;136638;136639;136640;136641;136642;136643;136644;136645;136646;136647;136648;136649;136650;136651;136652;136653;136654;136655;136656;136657;136658;136659;136660;136661;136662;136663 84060;84061;84062;84063;84064;84065;84066;84067;84068;84069;84070;84071;84072;84073;84074;84075;84076;84077;84078;84079;84080;84081;84082;84083;84084;84085;84086;84087;84088;84089;84090;84091;84092;84093;84094;84095;84096;84097;84098;84099;84100;84101;84102;84103;84104;84105;84106;84107 84098 48 GGVVIEPMLTDQWYVR Unmodified 1861.9397 0.93965493 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 52.129 50.881 2;3 7.3487E-10 23870 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 149.31 143.08 1126100000 86869000 91374000 75295000 0 0 0 92392000 86966000 90016000 0 0 0 95420000 91156000 84086000 0 0 0 95726000 122170000 114620000 0 0 0 7362 158 7183 136664;136665;136666;136667;136668;136669;136670;136671;136672;136673;136674;136675;136676;136677;136678;136679;136680;136681;136682;136683;136684;136685;136686 84108;84109;84110;84111;84112;84113;84114;84115;84116;84117;84118;84119 84118 12 GGVVQYVDASR Unmodified 1149.5778 0.57783619 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 3 1 1 1 5 4 3 1 1 1 4 3 3 22.676 22.169 2;3 9.083E-06 7188 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 148.14 135.94 16391000000 173100000 155500000 158420000 6547500 5889900 6746100 143570000 135150000 125550000 1130300000 1019100000 1090600000 158850000 148390000 120040000 2571000000 2353100000 2205100000 196950000 187310000 186810000 1516800000 1328000000 1267800000 7363 463 7184 136687;136688;136689;136690;136691;136692;136693;136694;136695;136696;136697;136698;136699;136700;136701;136702;136703;136704;136705;136706;136707;136708;136709;136710;136711;136712;136713;136714;136715;136716;136717;136718;136719;136720;136721;136722;136723;136724;136725;136726;136727;136728;136729 84120;84121;84122;84123;84124;84125;84126;84127;84128;84129;84130;84131;84132;84133;84134;84135;84136;84137;84138;84139;84140;84141;84142;84143;84144;84145;84146;84147;84148;84149;84150;84151;84152;84153;84154 84140 32 GGWTELDLAQTNYLR Unmodified 1735.8529 0.85294842 1498 P37765 rluB Ribosomal large subunit pseudouridine synthase B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 47.605 46.152 2 1.1792E-20 22411 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 221.32 197.94 55229000 11457000 10796000 13094000 0 0 0 0 4874200 0 0 1256200 0 0 0 0 0 0 0 3990700 4721300 5041000 0 0 0 7364 1498 7185 136730;136731;136732;136733;136734;136735;136736;136737 84155 84155 1 GGYDINGLILVER Unmodified 1417.7565 0.75652884 125 P06616 era GTPase Era yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 47.219 45.681 2 0.037095 22719 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 67.08 53.988 64116000 6588700 8166000 5216500 0 0 0 8148100 7464000 4169400 0 1322400 1258900 4815400 0 0 0 0 0 7002900 9963500 0 0 0 0 7365 125 7186 136738;136739;136740;136741;136742;136743;136744;136745;136746;136747;136748 84156;84157;84158 84156 0 GGYDLVTASGDASLR Unmodified 1480.7158 0.71578623 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 32.516 31.334 2 7.8721E-06 15037 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.299 81.076 220930000 75148000 66082000 62630000 0 0 0 0 0 0 0 0 0 6694300 6131300 4247100 0 0 0 0 0 0 0 0 0 7366 1816 7187 136749;136750;136751;136752;136753;136754 84159;84160;84161 84159 3 GGYEVLSQALER Unmodified 1320.6674 0.66737948 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 36.844 35.112 2 1.0494E-16 16830 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 205.14 194.62 320430000 0 0 0 0 577460 0 39014000 40315000 36955000 0 0 0 24209000 24779000 29357000 0 0 0 45615000 42064000 37549000 0 0 0 7367 1685 7188 136755;136756;136757;136758;136759;136760;136761;136762;136763;136764 84162;84163;84164;84165;84166;84167;84168;84169 84166 8 GGYGIVSCYNSLPLAGGGSTLVR Unmodified 2297.1474 0.14741588 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 48.531 47.169 2;3 1.0812E-21 21985 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 169.37 160.32 289500000 0 0 0 0 0 0 36201000 27369000 36982000 0 0 0 41351000 33785000 34981000 0 0 0 27037000 24877000 26912000 0 0 0 7368 1467 7189 136765;136766;136767;136768;136769;136770;136771;136772;136773;136774;136775;136776;136777;136778;136779;136780;136781;136782 84170;84171;84172;84173;84174;84175;84176;84177;84178 84176 9 GGYVEPEYVQAMLDR Unmodified 1725.8032 0.80322103 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 2 1 2 2 2 2 2 2 1 2 2 2 1 46.114 44.522 2;3 1.203E-06 17908 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 143.97 129.56 385050000 20613000 20440000 14766000 3729600 4283600 3335900 31941000 30889000 29682000 17523000 14615000 15318000 29698000 33971000 32455000 4695000 0 0 22871000 23596000 26338000 4284900 0 0 7369 33 7190 136783;136784;136785;136786;136787;136788;136789;136790;136791;136792;136793;136794;136795;136796;136797;136798;136799;136800;136801;136802;136803;136804;136805;136806;136807;136808;136809;136810;136811;136812;136813 84179;84180;84181;84182;84183;84184;84185;84186;84187;84188;84189;84190;84191;84192;84193;84194 84180 16 GGYVEPEYVQAMLDREK Unmodified 1982.9408 0.94077715 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.154 38.037 3 9.5897E-05 15467 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 73.464 68.847 28911000 0 0 0 1753300 3377100 2704900 0 0 0 5922800 4794500 4660300 0 0 0 0 0 0 0 0 0 1747800 2151700 1798300 7370 33 7191 136814;136815;136816;136817;136818;136819;136820;136821;136822 84195 84195 1 GHAADKK Unmodified 725.38204 0.38203692 371 P0A7U3 rpsS 30S ribosomal protein S19 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1.6607 2.5576 2 0.011797 225 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.839 77.023 33975000 3886600 3799800 3329700 0 109350 86710 0 0 0 0 0 0 2018300 1969800 0 0 0 0 7100300 5215000 6459800 0 0 0 7371 371 7192 136823;136824;136825;136826;136827;136828;136829;136830;136831;136832 84196;84197;84198;84199;84200;84201;84202;84203;84204 84197 9 GHAAQLSQYNQVLASLK Unmodified 1826.9639 0.96389585 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 34.355 32.753 2;3 1.592E-19 15470 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 232.37 224.27 494000000 37284000 33607000 30168000 0 0 1636000 37073000 38021000 31839000 5284200 4873700 5020800 32113000 32409000 32099000 0 0 0 47889000 59358000 48789000 5353100 6521400 4660800 7372 1197 7193 136833;136834;136835;136836;136837;136838;136839;136840;136841;136842;136843;136844;136845;136846;136847;136848;136849;136850;136851;136852;136853;136854;136855;136856;136857;136858;136859;136860;136861;136862;136863 84205;84206;84207;84208;84209;84210;84211;84212;84213;84214;84215;84216;84217;84218;84219;84220;84221;84222;84223;84224;84225 84217 21 GHAAVLLPFDPVRDEVVLIEQIR Unmodified 2585.433 0.43295686 1981 Q93K97 nudF ADP-ribose pyrophosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 53.652 52.213 3;4 3.8936E-10 25873 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.01 121.03 553770000 55170000 46224000 45705000 0 0 0 49027000 47732000 46163000 0 0 0 39574000 42112000 43642000 0 0 0 34973000 56416000 47034000 0 0 0 7373 1981 7194 136864;136865;136866;136867;136868;136869;136870;136871;136872;136873;136874;136875;136876;136877;136878;136879;136880;136881;136882;136883;136884;136885;136886 84226;84227;84228;84229;84230;84231;84232;84233;84234;84235;84236;84237;84238;84239;84240 84227 15 GHAFAVTDVR Unmodified 1071.5461 0.54614213 667 P0ABK9 nrfA Cytochrome c-552 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 15.974 16.857 2 0.001835 5443 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 82.426 61.727 50144000 0 0 0 0 0 0 7224200 0 8026100 0 0 0 6889500 11834000 7386100 0 0 0 0 2702500 6081500 0 0 0 7374 667 7195 136887;136888;136889;136890;136891;136892;136893 84241;84242;84243 84243 3 GHAGFVTLAAEDYQLAALGQVVELHNVGQR Unmodified 3162.621 0.62104499 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 51.094 49.873 4 2.4508E-11 24279 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.91 112.46 137120000 10484000 16256000 14155000 3908400 0 2719500 0 0 15155000 0 0 0 23559000 11049000 18720000 0 0 0 0 21110000 0 0 0 0 7375 1259 7196 136894;136895;136896;136897;136898;136899;136900;136901;136902;136903 84244 84244 1 GHAKPYTAPVAATAPVAASGPK Unmodified 2061.1007 0.10072368 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 1 By MS/MS By MS/MS 1 1 16.375 17.103 3 0.00034144 5992 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.045 75.055 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7376 1167 7197 136904;136905 84245;84246 84246 2 GHALEAVAK Unmodified 894.49232 0.49231565 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.179 12.012 2 7.4184E-05 2894 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 142.79 104.82 474650000 41772000 37581000 34534000 0 0 0 39317000 44806000 44253000 0 0 0 34592000 36205000 20811000 0 0 0 51036000 39425000 50318000 0 0 0 7377 1313 7198 136906;136907;136908;136909;136910;136911;136912;136913;136914;136915;136916;136917 84247;84248;84249;84250;84251;84252;84253;84254 84252 8 GHATLGGPNTTYVFK Unmodified 1561.7889 0.7888916 331 P0A7C6 pepE Peptidase E yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 1 23.814 22.978 2;3 1.8542E-45 10262 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 276.35 257.04 701130000 39315000 10354000 36811000 0 0 0 99059000 96291000 102580000 0 0 0 66378000 71396000 65755000 0 0 0 51184000 48346000 13667000 0 0 0 7378 331 7199 136918;136919;136920;136921;136922;136923;136924;136925;136926;136927;136928;136929;136930;136931;136932;136933;136934;136935;136936;136937;136938;136939 84255;84256;84257;84258;84259;84260;84261;84262;84263;84264;84265;84266;84267;84268;84269;84270;84271 84260 17 GHATQTLQEK Unmodified 1111.5622 0.56218613 1810 P76038 puuD Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 10.2 10.937 2 1.473E-12 2437 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 217.66 209.83 88202000 31458000 31528000 24412000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 803260 0 0 0 0 0 7379 1810 7200 136940;136941;136942;136943 84272;84273;84274 84272 3 GHAVECR Unmodified 827.37082 0.3708203 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.5076 8.0603 2 1.7145E-05 1008 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 144.9 107.87 622080000 0 0 89088000 1513400 1425500 1610800 79716000 73774000 0 2330300 2083000 1755100 102900000 0 98050000 1109800 1352900 1309600 0 158390000 0 1819200 1947400 1903100 7380 1236 7201 136944;136945;136946;136947;136948;136949;136950;136951;136952;136953;136954;136955;136956;136957;136958;136959;136960;136961;136962;136963;136964;136965;136966;136967;136968 84275;84276;84277;84278;84279;84280;84281;84282;84283;84284;84285;84286;84287 84279 13 GHAYVADNGDVMFDVPTDPTYGVLSR Unmodified 2795.2861 0.2860942 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 47.357 46.005 3 1.8973E-15 21424 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 138.54 135.82 210290000 19701000 19075000 17874000 0 0 0 0 18426000 16914000 0 0 0 20507000 14790000 15087000 0 0 0 24032000 21191000 22696000 0 0 0 7381 1188 7202 136969;136970;136971;136972;136973;136974;136975;136976;136977;136978;136979 84288;84289;84290;84291;84292 84292 5 GHDIEIEVAVFLEETLTEHKR Unmodified 2464.2598 0.2598031 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 53.634 52.191 4 1.2769E-21 25791 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159.95 158.77 175570000 4585800 3860700 0 2892400 2765700 2477600 40777000 36527000 41285000 15728000 10891000 9776800 0 0 1628400 0 0 0 0 0 2377100 0 0 0 7382 1440 7203 136980;136981;136982;136983;136984;136985;136986;136987;136988;136989;136990;136991;136992 84293;84294;84295;84296;84297 84297 5 GHEDYQIVGNQR Unmodified 1414.6589 0.65894006 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 1 13.817 14.644 2;3 4.164E-23 4360 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 227.27 226.07 447470000 37764000 40335000 35846000 1801200 0 1330500 50134000 44677000 46988000 0 1052500 0 26618000 28905000 30270000 0 0 0 32818000 35340000 32052000 0 1536100 0 7383 1192 7204 136993;136994;136995;136996;136997;136998;136999;137000;137001;137002;137003;137004;137005;137006;137007;137008;137009;137010;137011;137012;137013;137014;137015;137016;137017;137018;137019;137020 84298;84299;84300;84301;84302;84303;84304;84305;84306;84307;84308;84309 84308 8 GHEFMLK Unmodified 860.42146 0.42145889 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.585 16.037 2 0.00084363 4463 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 143.37 143.37 376420000 8365100 7729200 9899200 0 0 0 31533000 23652000 24558000 13615000 13686000 14749000 0 0 15247000 3248300 0 1651600 34036000 29729000 22202000 41741000 41921000 38854000 7384 205 7205 137021;137022;137023;137024;137025;137026;137027;137028;137029;137030;137031;137032;137033;137034;137035;137036;137037;137038 84310;84311;84312;84313;84314;84315;84316;84317;84318 84313 9 GHEVNFICADDAHGTPIMLK Unmodified 2224.0405 0.040507966 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 1 1 2 3 3 3 3 3 32.516 31.101 2;3;4 6.8757E-23 14712 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 222.57 219.54 3646900000 193440000 175390000 164590000 0 1226700 0 390070000 354170000 393150000 2240800 1920600 0 283350000 266810000 285670000 0 0 0 347870000 393400000 393570000 0 0 0 7385 60 7206 137039;137040;137041;137042;137043;137044;137045;137046;137047;137048;137049;137050;137051;137052;137053;137054;137055;137056;137057;137058;137059;137060;137061;137062;137063;137064;137065;137066;137067;137068;137069;137070;137071;137072;137073;137074;137075;137076 84319;84320;84321;84322;84323;84324;84325;84326;84327;84328;84329;84330;84331;84332;84333;84334;84335;84336;84337;84338;84339;84340;84341;84342;84343 84326 24 GHEVNFICADDAHGTPIMLK Oxidation (M) 2240.0354 0.035422588 60 P00959 metG Methionine--tRNA ligase yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 30.03 28.615 3 0.0052855 13380 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 45.257 43.863 62044000 7229200 7717700 7316100 0 0 0 10032000 6477900 7155700 0 0 0 2818600 0 0 0 0 0 6920200 0 6377100 0 0 0 7386 60 7206 137077;137078;137079;137080;137081;137082;137083;137084;137085 84344 84344 27 1 GHFFLHPR Unmodified 1009.5246 0.52461883 1660 P63235 gadC Probable glutamate/gamma-aminobutyrate antiporter yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.336 14.257 2 2.3659E-07 4000 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 150.07 139.88 299280000 30318000 19450000 0 5352400 4800900 5357900 75866000 77993000 66163000 0 0 0 3679000 2966300 2128900 0 0 0 5202400 0 0 0 0 0 7387 1660 7207 137086;137087;137088;137089;137090;137091;137092;137093;137094;137095;137096;137097;137098;137099;137100 84345;84346;84347;84348;84349;84350;84351;84352;84353;84354 84346 8 GHHTDIAIIMGLAGNEPATVDIDSIPGFIR Unmodified 3129.5917 0.5917187 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 53.985 52.538 3;4 6.297E-32 25708 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 196.22 193.44 823050000 58985000 53248000 52918000 0 0 0 97537000 96958000 68514000 0 0 0 18608000 17027000 45275000 0 0 0 120200000 97489000 96288000 0 0 0 7388 1117 7208 137101;137102;137103;137104;137105;137106;137107;137108;137109;137110;137111;137112;137113;137114;137115;137116;137117;137118;137119;137120;137121;137122 84355;84356;84357;84358;84359;84360;84361;84362;84363 84360 9 GHIAGSINLLPSEIK Unmodified 1547.8671 0.86714192 981 P0AG27 yibN Uncharacterized protein YibN yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 33.576 31.919 2;3 2.5896E-07 15017 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 126.1 120.78 594260000 30005000 23985000 22905000 10061000 11128000 10975000 42091000 39301000 36525000 14811000 8134800 17274000 40944000 38251000 36758000 0 0 0 48273000 56154000 59850000 16175000 16372000 14289000 7389 981 7209 137123;137124;137125;137126;137127;137128;137129;137130;137131;137132;137133;137134;137135;137136;137137;137138;137139;137140;137141;137142;137143;137144;137145;137146;137147;137148;137149;137150;137151;137152;137153;137154;137155;137156;137157;137158;137159;137160;137161;137162;137163;137164;137165 84364;84365;84366;84367;84368;84369;84370;84371;84372;84373;84374;84375;84376;84377;84378;84379;84380;84381;84382;84383;84384;84385;84386;84387;84388;84389;84390;84391;84392;84393 84380 27 GHIINKGEAIGVIAAQSIGEPGTQLTMR Oxidation (M) 2876.5178 0.51782548 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 5 4 7 5 5 6 7 36.288 34.746 3;4 9.1517E-11 11192 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 112.34 111.88 2160700000 0 0 0 0 0 0 0 0 0 222550000 171490000 131750000 0 0 0 324500000 326880000 322940000 0 0 0 219770000 220420000 220370000 7390 458 7210 137166;137167;137168;137169;137170;137171;137172;137173;137174;137175;137176;137177;137178;137179;137180;137181;137182;137183;137184;137185;137186;137187;137188;137189;137190;137191;137192;137193;137194;137195;137196;137197;137198;137199;137200;137201;137202;137203;137204;137205;137206;137207;137208;137209;137210;137211;137212;137213;137214;137215;137216 84394;84395;84396;84397;84398;84399;84400;84401;84402;84403;84404;84405;84406;84407;84408;84409;84410;84411;84412;84413;84414;84415;84416;84417;84418;84419;84420;84421;84422;84423;84424;84425;84426;84427;84428;84429;84430;84431;84432;84433;84434;84435;84436;84437;84438;84439;84440;84441;84442;84443;84444;84445;84446;84447;84448;84449 84412 229 55 GHIINKGEAIGVIAAQSIGEPGTQLTMR Unmodified 2860.5229 0.52291085 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 6 5 4 6 6 8 6 6 6 39.432 38.05 2;3;4;5 8.0928E-80 14006 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 346.7 326.33 15104000000 0 0 0 10689000 0 0 0 0 0 1823000000 1467400000 1134700000 0 0 0 1514200000 552490000 539510000 0 0 0 2619700000 2909000000 2533500000 7391 458 7210 137217;137218;137219;137220;137221;137222;137223;137224;137225;137226;137227;137228;137229;137230;137231;137232;137233;137234;137235;137236;137237;137238;137239;137240;137241;137242;137243;137244;137245;137246;137247;137248;137249;137250;137251;137252;137253;137254;137255;137256;137257;137258;137259;137260;137261;137262;137263;137264;137265;137266;137267;137268;137269;137270 84450;84451;84452;84453;84454;84455;84456;84457;84458;84459;84460;84461;84462;84463;84464;84465;84466;84467;84468;84469;84470;84471;84472;84473;84474;84475;84476;84477;84478;84479;84480;84481;84482;84483;84484;84485;84486;84487;84488;84489;84490;84491;84492;84493;84494;84495;84496;84497;84498;84499;84500;84501;84502;84503;84504;84505 84503 55 GHIPGALNVPWTELVR Unmodified 1757.9577 0.95768826 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.726 44.269 2;3 3.0855E-08 20538 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.09 145.09 2028600000 213560000 220350000 175010000 0 0 0 199760000 196400000 179250000 0 0 0 141300000 132850000 136200000 0 0 0 139600000 157660000 136680000 0 0 0 7392 1364 7211 137271;137272;137273;137274;137275;137276;137277;137278;137279;137280;137281;137282;137283;137284;137285;137286;137287;137288;137289;137290;137291;137292;137293;137294 84506;84507;84508;84509;84510;84511;84512;84513;84514;84515;84516;84517;84518;84519;84520;84521;84522;84523;84524;84525;84526;84527;84528;84529 84529 24 GHLPAHIALVGLQPAMLDDYGGSLSELAR Unmodified 3000.5491 0.5491256 1161 P19930 hyaD Hydrogenase 1 maturation protease yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 50.635 48.917 4 1.1029E-05 24113 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 70.761 68.782 31635000 0 0 0 0 0 0 13804000 14691000 0 3140300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7393 1161 7212 137295;137296;137297 84530 84530 1 GHLTASTVIQYR Unmodified 1344.715 0.71499837 1481 P37647 kdgK 2-dehydro-3-deoxygluconokinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.296 20.685 2 2.2664E-06 8138 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143.03 127.77 77631000 6585900 7159300 4442600 0 0 0 7867300 7076500 5851100 0 0 0 6787200 5474000 4952900 0 0 0 6688200 6545600 8200800 0 0 0 7394 1481 7213 137298;137299;137300;137301;137302;137303;137304;137305;137306;137307;137308;137309 84531;84532;84533;84534;84535 84532 5 GHLTLAIAELESGDDHSAQAVHTTVSQSLEK Unmodified 3243.6008 0.60076306 1684 P64540 yfcL Uncharacterized protein YfcL yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 2 1 2 3 2 3 2 35.161 33.755 3;4;5 7.2712E-43 16068 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 209.83 204.23 591440000 31950000 20968000 8696500 1422100 0 0 79008000 0 0 0 0 0 14192000 91760000 99024000 0 0 0 33111000 178380000 32929000 0 0 0 7395 1684 7214 137310;137311;137312;137313;137314;137315;137316;137317;137318;137319;137320;137321;137322;137323;137324;137325;137326;137327;137328;137329;137330 84536;84537;84538;84539;84540 84538 5 GHLTLQMTTLR Unmodified 1269.6863 0.68634078 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.295 24.242 2;3 3.1213E-08 11223 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.32 145.37 1135100000 114420000 115450000 77872000 0 0 0 96216000 83138000 79343000 0 0 0 87215000 90029000 91091000 0 0 0 110090000 97245000 92954000 0 0 0 7396 183 7215 137331;137332;137333;137334;137335;137336;137337;137338;137339;137340;137341;137342;137343;137344;137345;137346;137347;137348;137349;137350;137351;137352;137353;137354 84541;84542;84543;84544;84545;84546;84547;84548;84549;84550;84551;84552;84553;84554;84555;84556;84557;84558;84559;84560;84561;84562;84563;84564 84541 24 GHLVEILDPLSCYMNINPAASSIHYK Unmodified 2941.4466 0.44663437 1043 P0C0U4 rimK Ribosomal protein S6--L-glutamate ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 50.843 49.508 4 0.014185 19652 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 42.106 40.152 68728000 0 6810700 7211100 0 0 0 6237600 0 0 0 0 0 6751600 0 0 0 0 0 0 7059700 6016100 8748500 10561000 9331900 7397 1043 7216 137355;137356;137357;137358;137359;137360;137361;137362;137363 84565 84565 1 GHNVTVIDPVEK Unmodified 1306.6881 0.68811492 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 17.41 18.103 2;3 2.047E-08 6511 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.3 181.5 977690000 153970000 152780000 133730000 2944500 3422700 3591200 29535000 33226000 39096000 0 0 0 42643000 47636000 41025000 0 0 0 103470000 92837000 97777000 0 0 0 7398 34 7217 137364;137365;137366;137367;137368;137369;137370;137371;137372;137373;137374;137375;137376;137377;137378;137379;137380;137381;137382;137383;137384;137385;137386;137387;137388;137389;137390 84566;84567;84568;84569;84570;84571;84572;84573;84574;84575;84576;84577;84578;84579;84580;84581;84582;84583;84584;84585;84586;84587 84580 21 GHNYSLEALLAGNYLMADLFR Unmodified 2367.1682 0.16815132 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.3 53.87 3 3.2908E-10 19759 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 114.46 106.47 99450000 0 0 7850000 5132500 4656900 5074000 12512000 0 0 10145000 14282000 7741900 8241100 0 0 0 0 0 0 0 0 8380900 9126800 6307100 7399 439 7218 137391;137392;137393;137394;137395;137396;137397;137398;137399;137400;137401;137402 84588 84588 1 GHQHANLDPLGLWQQDK Unmodified 1955.9602 0.96020746 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 2 2 2 1 1 1 3 3 3 3 3 3 2 2 2 33.246 31.692 2;3;4 6.4541E-52 15004 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 293.96 282.32 2935600000 268300000 247610000 242640000 1403400 2431400 0 132690000 98905000 92445000 2742100 1769100 2771600 206750000 176150000 166550000 0 0 0 418150000 427730000 420450000 9895700 5555700 10635000 7400 937 7219 137403;137404;137405;137406;137407;137408;137409;137410;137411;137412;137413;137414;137415;137416;137417;137418;137419;137420;137421;137422;137423;137424;137425;137426;137427;137428;137429;137430;137431;137432;137433;137434;137435;137436;137437;137438;137439;137440;137441;137442;137443;137444;137445;137446;137447 84589;84590;84591;84592;84593;84594;84595;84596;84597;84598;84599;84600;84601;84602;84603;84604;84605;84606;84607;84608;84609;84610;84611;84612;84613;84614;84615;84616 84600 28 GHQVVASSSLVPHNDPTLLFTNAGMNQFK Unmodified 3108.5451 0.54510286 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 42.379 40.566 3;4 1.825E-53 20185 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 238.23 230.26 3357500000 278870000 296180000 266260000 6560300 4079900 4467500 230220000 240050000 245510000 12123000 9605100 10469000 247660000 277900000 205900000 0 0 0 332500000 308800000 356990000 8253500 6688500 8461100 7401 59 7220 137448;137449;137450;137451;137452;137453;137454;137455;137456;137457;137458;137459;137460;137461;137462;137463;137464;137465;137466;137467;137468;137469;137470;137471;137472;137473;137474;137475;137476;137477;137478;137479;137480;137481 84617;84618;84619;84620;84621;84622;84623;84624;84625;84626;84627;84628;84629;84630;84631;84632;84633;84634;84635;84636;84637;84638;84639;84640;84641;84642;84643;84644;84645;84646;84647 84623 31 GHRPAVK Unmodified 763.44531 0.44530587 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.1975 6.8497 2 0.00034092 927 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.13 117.88 1933200000 251020000 258960000 236790000 0 726120 504970 105140000 130490000 124000000 888930 769410 1604400 126280000 121130000 90607000 0 0 265910 175920000 160740000 144700000 769540 779380 1157900 7402 508 7221 137482;137483;137484;137485;137486;137487;137488;137489;137490;137491;137492;137493;137494;137495;137496;137497;137498;137499;137500;137501;137502 84648;84649;84650;84651;84652;84653;84654;84655;84656;84657;84658;84659;84660 84653 13 GHSSAQYSGEIK Unmodified 1262.5891 0.58912916 1801 P76002 pliG Inhibitor of g-type lysozyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 12.439 13.27 2;3 2.4683E-06 3062 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.71 134.82 123970000 10040000 16774000 14430000 0 0 0 0 0 0 0 0 0 0 46222000 36502000 0 0 0 0 0 0 0 0 0 7403 1801 7222 137503;137504;137505;137506;137507;137508;137509 84661;84662;84663;84664 84661 4 GHSVDEV Unmodified 741.32933 0.32933264 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.515 12.313 2 0.010894 3101 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.344 86.344 315360000 15055000 14909000 12216000 1238000 1118100 1232300 29238000 25987000 24425000 2843100 0 2213000 25968000 25584000 25839000 0 0 0 38131000 34015000 35352000 0 0 0 7404 294 7223 137510;137511;137512;137513;137514;137515;137516;137517;137518;137519;137520;137521;137522;137523;137524;137525;137526 84665 84665 1 GHTAAFIDLSGPKDEVSAALDR Unmodified 2269.1339 0.1338743 1315 P28248 dcd Deoxycytidine triphosphate deaminase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 2 2 2 1 1 2 1 1 1 1 1 1 1 1 2 37.681 35.89 3;4 1.1311E-15 17689 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 152.51 140.02 362520000 62715000 63252000 50635000 0 0 0 20122000 20089000 37134000 2206300 2172800 2244800 14882000 9135500 7520700 0 0 0 16646000 22569000 31196000 0 0 0 7405 1315 7224 137527;137528;137529;137530;137531;137532;137533;137534;137535;137536;137537;137538;137539;137540;137541;137542;137543;137544;137545;137546 84666;84667;84668;84669;84670;84671;84672;84673;84674;84675 84667 9 GHTELYR Unmodified 874.42972 0.42971539 567 P0A9Z1 glnB Nitrogen regulatory protein P-II 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 11.001 11.794 2 0.070669 2696 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 69.234 61.23 463770000 123020000 104280000 116020000 0 0 0 0 0 0 0 0 0 63344000 0 57111000 0 0 0 0 0 0 0 0 0 7406 567 7225 137547;137548;137549;137550;137551 84676;84677 84677 0 GHTIQEVR Unmodified 938.49338 0.49337828 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.697 11.495 2 0.00040535 2594 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.98 133.63 637360000 62794000 59696000 46776000 0 0 46962000 0 42349000 37689000 0 0 0 44528000 45644000 0 0 0 0 85924000 82846000 79041000 0 0 3109000 7407 346 7226 137552;137553;137554;137555;137556;137557;137558;137559;137560;137561;137562;137563 84678;84679;84680;84681;84682;84683;84684;84685;84686;84687 84687 10 GHTLTQSQNDALVAVFQAAFSK Unmodified 2332.1812 0.18115885 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.474 51.174 3 0.0009862 20921 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 63.165 59.927 58371000 3639000 0 0 1395000 4388900 2073000 0 0 0 6597300 7867600 4658900 1664400 2311800 0 0 0 0 5146100 5319200 6929000 3530200 2850800 0 7408 477 7227 137564;137565;137566;137567;137568;137569;137570;137571;137572;137573;137574;137575;137576;137577 84688 84688 1 GHVMNALPEDAK Unmodified 1280.6183 0.6183208 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 14.379 15.11 2;3 5.9754E-17 4868 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 214.05 196.58 1528200000 130780000 89558000 98440000 0 0 0 168060000 196200000 181080000 672300 0 0 134590000 118460000 132020000 0 0 0 93511000 92252000 92576000 0 0 0 7409 214 7228 137578;137579;137580;137581;137582;137583;137584;137585;137586;137587;137588;137589;137590;137591;137592;137593;137594;137595;137596;137597;137598;137599;137600;137601;137602 84689;84690;84691;84692;84693;84694;84695;84696;84697;84698;84699;84700;84701;84702;84703;84704;84705;84706;84707 84697 19 GHVMNALPEDAK Oxidation (M) 1296.6132 0.61323542 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 11.371 12.292 2 0.022569 3433 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 52.591 45.647 21133000 0 0 0 1409300 1310600 1129700 4736900 7343300 5203200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7410 214 7228 137603;137604;137605;137606;137607;137608 84708;84709;84710 84709 84 0 GHVSLPLVTTNR Unmodified 1292.7201 0.72008375 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 23.584 22.88 2 3.1132E-07 9918 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.84 154.15 29862000 11539000 10512000 7811200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7411 1554 7229 137609;137610;137611 84711;84712;84713 84712 3 GHVYIAQPPLYK Unmodified 1384.7503 0.75032125 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 1 2 1 1 2 2 2 24.375 23.365 2;3 2.27E-06 10566 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.01 141.31 775690000 72923000 77906000 65866000 5169800 5671800 5345200 33146000 33516000 31244000 31027000 32513000 28827000 69478000 22496000 21454000 3339600 0 0 108560000 41386000 35916000 17140000 16627000 16140000 7412 883 7230 137612;137613;137614;137615;137616;137617;137618;137619;137620;137621;137622;137623;137624;137625;137626;137627;137628;137629;137630;137631;137632;137633;137634;137635;137636;137637;137638;137639;137640;137641;137642;137643;137644;137645;137646;137647 84714;84715;84716;84717;84718;84719;84720;84721;84722;84723;84724;84725;84726;84727;84728;84729 84720 15 GHYGVALLTK Unmodified 1057.592 0.59202969 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.556 20.884 3 0.00013836 8316 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 93.649 82.055 442530000 33820000 30266000 26185000 0 0 0 27872000 29477000 35399000 0 0 0 38717000 35814000 32108000 2707400 4960400 3926000 61453000 44210000 35619000 0 0 0 7413 197 7231 137648;137649;137650;137651;137652;137653;137654;137655;137656;137657;137658;137659;137660;137661;137662 84730;84731;84732;84733;84734;84735;84736;84737;84738;84739;84740;84741;84742;84743;84744 84737 15 GHYTFSVK Unmodified 937.46577 0.46576654 577 P0AA57 yobA Protein YobA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 14.058 14.928 2 0.00069413 4861 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.12 119.7 192700000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72778000 69230000 50696000 0 0 0 7414 577 7232 137663;137664;137665;137666;137667;137668;137669;137670;137671 84745;84746;84747;84748;84749;84750;84751;84752;84753 84748 9 GIAAAAQGELAGADAK Unmodified 1412.726 0.72595699 1567 P45425 nanK N-acetylmannosamine kinase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 1 1 1 2 2 2 2 2 2 2 1 1 1 17.123 17.182 2;3 1.9189E-08 10303 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.54 121.24 409920000 34117000 34112000 18502000 0 0 0 0 0 0 28172000 40544000 85450000 28291000 21285000 25882000 0 0 0 17194000 20715000 23557000 7091100 11947000 13059000 7415 1567 7233 137672;137673;137674;137675;137676;137677;137678;137679;137680;137681;137682;137683;137684;137685;137686;137687;137688;137689;137690;137691;137692;137693;137694;137695 84754;84755;84756;84757;84758;84759 84757 4 GIAAASLAAILEAR Unmodified 1325.7667 0.76669959 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 51.907 50.592 2;3 8.4591E-12 24668 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 210.87 181.39 4234400000 169240000 195070000 185700000 6677600 6148500 4977600 476550000 401510000 413460000 7987300 7049900 6493300 368590000 338290000 330070000 0 0 0 468070000 445500000 385000000 5921600 7090600 4980100 7416 337 7234 137696;137697;137698;137699;137700;137701;137702;137703;137704;137705;137706;137707;137708;137709;137710;137711;137712;137713;137714;137715;137716;137717;137718;137719;137720;137721;137722;137723;137724;137725;137726;137727;137728;137729;137730;137731;137732;137733;137734;137735;137736;137737 84760;84761;84762;84763;84764;84765;84766;84767;84768;84769;84770;84771;84772;84773;84774;84775;84776;84777;84778;84779;84780;84781;84782;84783;84784 84769 25 GIADDVR Unmodified 744.37662 0.37661719 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 14.128 14.922 2 0.051776 4881 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 62.714 26.908 173670000 0 0 0 0 0 0 0 38811000 6491000 0 0 0 0 0 27540000 0 0 0 29848000 35137000 35846000 0 0 0 7417 148 7235 137738;137739;137740;137741;137742;137743 84785;84786 84786 2 GIAETAQCGAILGIGGGK Unmodified 1671.8614 0.86140461 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 1 2 2 2 2 2 2 36.555 34.858 2;3 4.9821E-29 17033 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 274.8 261.85 1084800000 44533000 39885000 30792000 0 0 0 196590000 189300000 188870000 0 2338100 963110 81119000 77201000 79020000 0 0 0 55045000 48383000 50773000 0 0 0 7418 554 7236 137744;137745;137746;137747;137748;137749;137750;137751;137752;137753;137754;137755;137756;137757;137758;137759;137760;137761;137762;137763;137764;137765;137766;137767 84787;84788;84789;84790;84791;84792;84793;84794;84795;84796;84797;84798;84799;84800;84801;84802 84788 16 GIAFDTMLESYILNSVAGR Unmodified 2056.0299 0.029926505 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 55.807 55.862 3 9.6113E-18 21216 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 166.92 165.41 97164000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27459000 33072000 36632000 0 0 0 0 0 0 7419 37 7237 137768;137769;137770 84803;84804;84805 84805 3 GIAFGNIDAIVEHIQQR Unmodified 1879.9904 0.99044495 1936 P77739 yniA Uncharacterized protein YniA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 49.645 48.23 2;3 1.9533E-24 23671 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 216.84 203.18 845630000 151090000 124370000 145970000 920890 1026200 1163500 93346000 77360000 93409000 0 0 0 36487000 30916000 29932000 0 0 0 23392000 20496000 15753000 0 0 0 7420 1936 7238 137771;137772;137773;137774;137775;137776;137777;137778;137779;137780;137781;137782;137783;137784;137785;137786;137787;137788;137789;137790;137791 84806;84807;84808;84809;84810;84811;84812;84813;84814;84815;84816;84817;84818;84819;84820 84814 15 GIAILQYLEK Unmodified 1146.6649 0.66486028 737 P0ACN4 allR HTH-type transcriptional repressor AllR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.298 48.114 2 4.002E-05 17136 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 140.5 123.26 239330000 35524000 34203000 28844000 1226500 1214900 1100100 6358500 9326200 8235300 2573800 0 2315800 7399300 5715400 6082800 22132000 22957000 22422000 6352800 8306400 7040600 0 0 0 7421 737 7239 137792;137793;137794;137795;137796;137797;137798;137799;137800;137801;137802;137803;137804;137805;137806;137807;137808;137809;137810;137811 84821;84822;84823;84824;84825;84826;84827;84828;84829;84830;84831;84832 84822 12 GIAIRPEVLLLDEPCSALDPISTGR Unmodified 2691.4266 0.42655085 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 52.408 51.231 2;3 1.4329E-83 25312 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 302.14 284.22 7968100000 25667000 22359000 25770000 7816500 9420200 8908400 496130000 504580000 481120000 389280000 379140000 319710000 640820000 541240000 514660000 41455000 50068000 39317000 897510000 886220000 912500000 254740000 286260000 233370000 7422 594 7240 137812;137813;137814;137815;137816;137817;137818;137819;137820;137821;137822;137823;137824;137825;137826;137827;137828;137829;137830;137831;137832;137833;137834;137835;137836;137837;137838;137839;137840;137841;137842;137843;137844;137845;137846;137847;137848;137849;137850;137851 84833;84834;84835;84836;84837;84838;84839;84840;84841;84842;84843;84844;84845;84846;84847;84848;84849;84850;84851;84852;84853;84854;84855;84856;84857;84858;84859;84860;84861;84862;84863;84864;84865;84866;84867 84845 35 GIAIVER Unmodified 756.44939 0.4493882 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.787 19.092 2 0.0023108 7501 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.54 45.15 981800000 13493000 11398000 11868000 0 0 0 105770000 113680000 118360000 4321800 4312300 4038800 85483000 73927000 75452000 13010000 9004800 10226000 106990000 95607000 102870000 7192600 7863900 6944000 7423 1323 7241 137852;137853;137854;137855;137856;137857;137858;137859;137860;137861;137862;137863;137864;137865;137866;137867;137868;137869;137870;137871;137872;137873 84868;84869;84870;84871;84872;84873;84874;84875;84876 84868 9 GIAMLTIDMPSVGFSSK Unmodified 1752.879 0.87902851 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.427 51.987 2 1.0879E-18 25701 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 185.27 179.16 118840000 18475000 17920000 15466000 0 0 0 10044000 8221800 9921300 0 0 0 7757100 7065000 6431100 0 0 0 5519300 5589100 6431700 0 0 0 7424 88 7242 137874;137875;137876;137877;137878;137879;137880;137881;137882;137883;137884;137885 84877;84878 84877 2 GIANSILIK Unmodified 927.57532 0.57531699 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.028 28.642 2 0.0005411 12625 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 107.59 57.284 28748000000 1872400000 1794700000 1684100000 15658000 13692000 12171000 3623700000 3450400000 3343300000 16520000 15800000 12379000 1815100000 1788900000 1793900000 4913900 4520400 4264700 2571100000 2738500000 2157000000 5577700 4183000 5453200 7425 270 7243 137886;137887;137888;137889;137890;137891;137892;137893;137894;137895;137896;137897;137898;137899;137900;137901;137902;137903;137904;137905;137906;137907;137908;137909 84879;84880;84881;84882;84883;84884;84885;84886;84887;84888;84889;84890;84891;84892;84893;84894;84895;84896;84897;84898;84899 84899 20 GIASMHCSANVGEK Unmodified 1459.6548 0.65478266 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 12.662 13.503 2;3 8.8115E-16 4097 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 202.44 183.49 4176900000 597560000 550210000 591340000 0 0 0 301070000 347220000 342280000 0 0 0 235190000 195640000 218380000 0 0 0 301710000 273990000 222260000 0 0 0 7426 1195 7244 137910;137911;137912;137913;137914;137915;137916;137917;137918;137919;137920;137921;137922;137923;137924;137925;137926;137927;137928;137929;137930;137931;137932;137933 84900;84901;84902;84903;84904;84905;84906;84907;84908;84909;84910;84911 84903 12 GIASMHCSANVGEK Oxidation (M) 1475.6497 0.64969728 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.07 11.862 2 0.00015459 3048 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.114 78.908 86399000 10297000 12959000 11347000 0 0 0 10969000 9280800 11626000 0 0 0 0 4254800 0 0 0 0 6032400 3902400 5731000 0 0 0 7427 1195 7244 137934;137935;137936;137937;137938;137939;137940;137941;137942;137943 84912 84912 503 1 GIATCVLLGNPAEINR Unmodified 1696.893 0.89303909 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 41.655 39.79 2;3 1.0964E-30 19293 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 234.3 227.86 5247800000 334500000 289290000 288920000 3479600 2681000 2804700 527330000 472770000 459460000 44951000 45017000 41512000 463220000 489890000 446920000 0 0 0 449830000 476620000 395270000 4419800 4199800 4711100 7428 539 7245 137944;137945;137946;137947;137948;137949;137950;137951;137952;137953;137954;137955;137956;137957;137958;137959;137960;137961;137962;137963;137964;137965;137966;137967;137968;137969;137970;137971;137972;137973;137974;137975;137976;137977;137978;137979;137980;137981;137982 84913;84914;84915;84916;84917;84918;84919;84920;84921;84922;84923;84924;84925;84926;84927;84928;84929;84930;84931;84932;84933;84934;84935;84936;84937;84938;84939;84940;84941;84942;84943;84944;84945 84935 32 GIATLPR Unmodified 726.43882 0.43882351 2005 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 2 2 3 3 3 3 3 3 3 3 3 3 3 3 14.784 15.335 1;2 0.0023035 5113 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.67 56.006 16396000000 1913800000 2013300000 1743900000 53669000 53088000 59681000 821490000 771750000 846570000 129880000 63303000 64749000 1054500000 917860000 777290000 210770000 147000000 118940000 1494800000 1419600000 1328000000 128060000 141180000 122800000 + 7429 2005 7246 137983;137984;137985;137986;137987;137988;137989;137990;137991;137992;137993;137994;137995;137996;137997;137998;137999;138000;138001;138002;138003;138004;138005;138006;138007;138008;138009;138010;138011;138012;138013;138014;138015;138016;138017;138018;138019;138020;138021;138022;138023;138024;138025;138026;138027;138028;138029;138030;138031;138032;138033;138034;138035;138036;138037;138038;138039;138040;138041;138042;138043;138044;138045;138046;138047;138048;138049;138050;138051;138052 84946;84947;84948;84949;84950;84951;84952;84953;84954;84955;84956;84957;84958;84959;84960;84961;84962;84963;84964;84965;84966;84967;84968 84950 22 GIAWNTQSEMDLLR Unmodified 1632.793 0.7929907 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.424 44.874 2 1.6051E-26 17708 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 236.35 164.73 554900000 12660000 13980000 0 2807500 2475500 2799900 51440000 47132000 41631000 8168300 8479200 7439300 37398000 28873000 31088000 0 0 1485600 55429000 58504000 52398000 29271000 32614000 28824000 7430 205 7247 138053;138054;138055;138056;138057;138058;138059;138060;138061;138062;138063;138064;138065;138066;138067;138068;138069;138070;138071;138072;138073 84969;84970;84971;84972;84973;84974;84975;84976;84977;84978;84979;84980;84981;84982 84974 14 GIAWNTQSEMDLLRK Unmodified 1760.888 0.88795372 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 2 38.408 36.361 2;3 2.6855E-12 14129 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 150.22 149.59 178400000 0 0 0 3271600 1630600 2352400 2645000 0 0 12126000 8727700 8737700 0 1185100 0 0 0 0 0 0 0 48059000 44650000 45014000 7431 205 7248 138074;138075;138076;138077;138078;138079;138080;138081;138082;138083;138084;138085;138086;138087 84983;84984;84985;84986;84987;84988;84989;84990;84991;84992;84993 84986 11 GIAYLHMSEPDWAGGEPYTDAFR Unmodified 2582.1536 0.15362347 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 1 2 2 1 2 48.179 46.812 2;3 9.0004E-22 23072 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 160.27 160.27 442910000 10761000 12199000 9763300 0 0 0 50596000 49372000 53996000 0 0 0 43981000 35508000 43053000 0 0 0 47237000 38580000 47859000 0 0 0 7432 1890 7249 138088;138089;138090;138091;138092;138093;138094;138095;138096;138097;138098;138099;138100;138101;138102;138103;138104;138105;138106 84994;84995;84996;84997;84998;84999;85000;85001;85002;85003;85004;85005;85006 84996 13 GICLSAGSPVSHSALIAR Unmodified 1794.9411 0.94105192 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 29.989 28.608 2;3 5.7099E-37 13592 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 282.91 254.73 2481800000 89145000 81742000 77687000 0 784860 0 279940000 283830000 285150000 22029000 23251000 20427000 191720000 209500000 208620000 9914500 5083300 4888000 245760000 240530000 201790000 0 0 0 7433 1468 7250 138107;138108;138109;138110;138111;138112;138113;138114;138115;138116;138117;138118;138119;138120;138121;138122;138123;138124;138125;138126;138127;138128;138129;138130;138131;138132;138133;138134;138135;138136;138137;138138;138139;138140;138141 85007;85008;85009;85010;85011;85012;85013;85014;85015;85016;85017;85018;85019;85020;85021;85022;85023;85024;85025;85026;85027;85028;85029;85030;85031;85032;85033;85034;85035 85017 29 GIDALPLTGQYTHYALNK Unmodified 1974.0211 0.021076378 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 39.483 37.736 2;3 7.819E-14 18334 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 149.83 139.78 1840200000 0 0 0 1700300 0 1029000 140910000 130190000 133170000 0 0 0 219260000 220680000 210540000 0 0 0 257030000 268390000 257260000 0 0 0 7434 38 7251 138142;138143;138144;138145;138146;138147;138148;138149;138150;138151;138152;138153;138154;138155;138156;138157;138158;138159;138160;138161 85036;85037;85038;85039;85040;85041;85042;85043;85044;85045;85046;85047;85048;85049;85050;85051;85052;85053 85046 18 GIDALPLTGQYTHYALNKK Unmodified 2102.116 0.1160394 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 2 1 1 2 2 2 1 32.984 31.687 3;4 7.7179E-07 14494 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.502 96.075 1833100000 0 0 0 1008900 810820 907590 141860000 143080000 156010000 0 0 0 212750000 229450000 189960000 5014600 3408800 2900100 228140000 254520000 262200000 0 0 1130600 7435 38 7252 138162;138163;138164;138165;138166;138167;138168;138169;138170;138171;138172;138173;138174;138175;138176;138177;138178;138179;138180;138181;138182;138183;138184;138185;138186;138187 85054;85055;85056;85057;85058;85059;85060;85061;85062;85063;85064;85065;85066;85067;85068;85069;85070 85065 17 GIDALVVIGGDGSYMGAMR Unmodified 1880.9125 0.91245391 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 2 3 1 1 2 2 2 1 3 2 1 1 53.059 51.735 2 2.2123E-14 24014 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 153.81 140.72 329200000 21334000 27529000 29958000 0 1801400 0 28521000 35277000 34968000 0 0 0 29388000 22034000 28587000 0 0 0 29393000 19415000 20995000 0 0 0 7436 320 7253 138188;138189;138190;138191;138192;138193;138194;138195;138196;138197;138198;138199;138200;138201;138202;138203;138204;138205;138206;138207;138208;138209 85071;85072;85073;85074 85073 2 GIDDNWHLTLFIENGR Unmodified 1898.9275 0.92751034 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.605 49.132 3 0.049814 23904 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 27.43 17.642 223720000 36547000 40605000 0 0 0 0 25978000 0 0 1521800 0 0 0 0 0 0 0 0 44795000 33799000 40478000 0 0 0 7437 1143 7254 138210;138211;138212;138213;138214;138215;138216;138217 85075;85076;85077;85078;85079;85080;85081 85077 7 GIDEFYAQCEK Unmodified 1358.5813 0.58126659 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.088 26.893 2 4.3454E-14 12136 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 204.42 204.42 693180000 171360000 153180000 138140000 1506200 1352100 1343700 24189000 24884000 27607000 0 0 0 23431000 21789000 23105000 0 0 0 24968000 27656000 28669000 0 0 0 7438 404 7255 138218;138219;138220;138221;138222;138223;138224;138225;138226;138227;138228;138229;138230;138231;138232 85082;85083;85084;85085;85086;85087;85088;85089;85090;85091;85092;85093 85090 12 GIDGLTAQLK Unmodified 1014.571 0.5709599 813 P0ADV7 mlaC Probable phospholipid-binding protein MlaC yes yes 0 0 0 By MS/MS By MS/MS 1 1 29.445 28.356 2 0.00071946 12654 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 88.948 47.721 51407000 0 0 0 0 0 0 0 0 0 0 0 0 25093000 26314000 0 0 0 0 0 0 0 0 0 0 7439 813 7256 138233;138234 85094;85095 85095 2 GIDIPDVSHVFNFDMPR Unmodified 1957.9356 0.93563219 1182 P21507 srmB ATP-dependent RNA helicase SrmB yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 53.404 52.04 3 9.4639E-05 25434 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 72.819 69.099 20446000 11216000 0 7674500 929060 0 626630 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7440 1182 7257 138235;138236;138237;138238 85096 85096 1 GIDIYYENVGGK Unmodified 1326.6456 0.6455814 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 2 1 1 1 1 1 32.507 31.282 2 4.317E-05 14873 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.66 84.105 304980000 88769000 70785000 70666000 0 0 0 0 0 0 0 0 0 15834000 12401000 12478000 0 0 0 0 17219000 16830000 0 0 0 7441 1817 7258 138239;138240;138241;138242;138243;138244;138245;138246;138247 85097;85098;85099;85100;85101 85098 2 GIDKPIPEGLYSAK Unmodified 1486.8031 0.80314468 1546 P39835 gntT High-affinity gluconate transporter yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 26.243 24.995 2;3 7.1791E-06 9105 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 116.54 113.24 644810000 0 0 0 0 0 948360 54511000 46448000 55692000 25270000 21061000 21670000 49431000 48173000 49552000 3281600 4030700 4922500 70000000 71675000 64744000 18966000 15961000 18476000 7442 1546 7259 138248;138249;138250;138251;138252;138253;138254;138255;138256;138257;138258;138259;138260;138261;138262;138263;138264;138265;138266;138267;138268;138269;138270;138271;138272;138273;138274;138275;138276;138277;138278;138279;138280;138281 85102;85103;85104;85105;85106;85107;85108;85109;85110;85111;85112;85113;85114;85115;85116;85117;85118;85119 85109 18 GIDMFDCVMPTR Unmodified 1440.62 0.61997705 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 45.181 44.366 2 3.8666E-06 20764 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 134.59 132.19 128780000 0 0 0 0 0 0 0 0 0 0 0 0 11217000 11718000 12144000 19477000 17334000 14465000 15677000 13635000 13117000 0 0 0 7443 395 7260 138282;138283;138284;138285;138286;138287;138288;138289;138290 85120;85121;85122;85123;85124;85125;85126;85127;85128 85126 9 GIDMLDAPVSGGEPK Unmodified 1484.7181 0.71809442 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 34.995 33.651 2 3.2557E-07 16058 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.01 116.34 1201100000 111910000 111770000 92343000 0 0 0 108560000 109140000 102370000 0 0 0 102000000 95664000 100080000 683570 0 0 92129000 88462000 86007000 0 0 0 7444 671 7261 138291;138292;138293;138294;138295;138296;138297;138298;138299;138300;138301;138302;138303 85129;85130;85131;85132;85133;85134;85135;85136;85137;85138;85139;85140 85136 12 GIDMLDAPVSGGEPK Oxidation (M) 1500.713 0.71300904 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 28.308 27.283 2 0.027075 12346 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 46.796 36.546 8136400 2665200 2005000 0 0 0 0 0 0 0 0 0 0 0 2073000 1393300 0 0 0 0 0 0 0 0 0 7445 671 7261 138304;138305;138306;138307 85141 85141 370 0 GIDQHMLATLR Unmodified 1253.655 0.65504065 301 P0A720 tmk Thymidylate kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 1 1 1 1 2 2 2 2 2 2 28.379 27.113 2;3 0.00020488 12289 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.87 82.598 203860000 8491700 19765000 7593200 342720 0 0 9611300 8132000 7284300 0 0 3636700 9509100 10226000 8960900 0 0 0 38075000 38634000 33595000 0 0 0 7446 301 7262 138308;138309;138310;138311;138312;138313;138314;138315;138316;138317;138318;138319;138320;138321;138322;138323;138324;138325;138326;138327;138328;138329;138330 85142;85143;85144;85145;85146;85147;85148;85149;85150;85151;85152;85153;85154;85155;85156 85148 15 GIDQVALAVSEMDR Unmodified 1502.7399 0.73989249 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 46.791 45.462 2;3 3.091E-15 16288 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 200.82 185.24 313080000 62623000 59213000 55251000 46363000 42070000 47560000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7447 151 7263 138331;138332;138333;138334;138335;138336;138337;138338;138339;138340;138341;138342 85157;85158;85159;85160;85161;85162;85163;85164;85165;85166;85167;85168 85160 12 GIDQVGLAVAEMDR Unmodified 1472.7293 0.72932781 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 3 1 1 2 2 2 1 1 1 1 45.304 43.847 2;3 7.0163E-11 14622 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 126.76 117.33 113450000 41102000 26229000 24345000 3061700 3535000 3631200 0 5141300 4348500 0 0 0 1174500 0 881660 0 0 0 0 0 0 0 0 0 7448 76 7264 138343;138344;138345;138346;138347;138348;138349;138350;138351;138352;138353;138354;138355;138356;138357 85169;85170;85171;85172;85173;85174;85175 85171 6 GIDTIVLCGISTNIGVESTAR Unmodified 2175.1205 0.12053243 790 P0ADI7 yecD Isochorismatase family protein YecD yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 1 1 1 1 1 1 1 1 1 1 52.598 51.208 2;3 0.00013526 25308 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 68.189 65.266 157430000 0 0 0 0 0 0 50815000 4676600 5783100 4537500 4269200 3349900 0 5639300 4998700 0 0 0 0 0 0 25405000 22850000 25100000 7449 790 7265 138358;138359;138360;138361;138362;138363;138364;138365;138366;138367;138368;138369 85176;85177 85176 1 GIDTVLAELR Unmodified 1085.6081 0.60807369 356 P0A7M2 rpmB 50S ribosomal protein L28 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 1 1 1 1 1 1 1 1 3 3 3 1 1 1 2 2 2 2 2 3 41.08 39.771 1;2;3 1.0141E-08 21435 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 182.53 153.16 9368800000 1127000000 1131000000 1026900000 38589000 35035000 38474000 350230000 345470000 314830000 69434000 67998000 76657000 658710000 554890000 571520000 89728000 113790000 162100000 733670000 824850000 764700000 81870000 90262000 101180000 7450 356 7266 138370;138371;138372;138373;138374;138375;138376;138377;138378;138379;138380;138381;138382;138383;138384;138385;138386;138387;138388;138389;138390;138391;138392;138393;138394;138395;138396;138397;138398;138399;138400;138401;138402;138403;138404;138405;138406;138407;138408;138409;138410;138411 85178;85179;85180;85181;85182;85183;85184;85185;85186;85187;85188;85189;85190;85191;85192;85193;85194;85195;85196;85197;85198;85199;85200;85201;85202;85203;85204;85205;85206;85207;85208;85209;85210;85211;85212;85213;85214 85196 34 GIEANIK Unmodified 743.41775 0.41775372 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.377 14.895 2 0.02764 4659 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.432 28.512 315900000 0 0 0 348960 0 0 25916000 28866000 27935000 2027500 1993600 0 0 0 0 0 502600 564030 2738500 4640500 220360000 0 0 0 7451 1789 7267 138412;138413;138414;138415;138416;138417;138418;138419;138420;138421;138422 85215;85216;85217 85215 3 GIEDALTADGK Unmodified 1088.535 0.53496832 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.438 25.391 2 3.9295E-05 10907 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 131.44 83.156 430220000 33876000 32073000 27586000 0 0 0 27213000 26627000 27345000 0 0 0 40125000 39872000 37717000 0 0 0 47257000 47484000 43048000 0 0 0 7452 86 7268 138423;138424;138425;138426;138427;138428;138429;138430;138431;138432;138433;138434 85218;85219;85220;85221;85222;85223;85224;85225;85226;85227 85227 10 GIEDALTADGKPLLDVWMSHGDK Unmodified 2467.2053 0.20532469 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 3 3 3 3 3 3 50.779 49.511 3;4 1.36E-22 24497 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 177.47 174.41 6190300000 450460000 416220000 378780000 1613900 1013600 1404400 386600000 344700000 307320000 0 0 0 627130000 682490000 695780000 0 0 0 662950000 617730000 616110000 0 0 0 7453 86 7269 138435;138436;138437;138438;138439;138440;138441;138442;138443;138444;138445;138446;138447;138448;138449;138450;138451;138452;138453;138454;138455;138456;138457;138458;138459;138460;138461;138462;138463;138464;138465;138466;138467;138468 85228;85229;85230;85231;85232;85233;85234;85235;85236;85237;85238;85239;85240;85241;85242;85243;85244;85245;85246;85247;85248;85249;85250;85251;85252 85231 24 GIEEAYR Unmodified 836.40283 0.40283194 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.689 15.254 2 0.0016618 4725 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 126.04 71.5 856430000 55670000 49340000 48475000 1885200 2236100 2053500 68731000 72723000 65886000 13889000 13065000 13257000 76306000 61054000 60344000 3568800 0 3525200 79662000 70333000 71781000 8599600 7697800 6350300 7454 882 7270 138469;138470;138471;138472;138473;138474;138475;138476;138477;138478;138479;138480;138481;138482;138483;138484;138485;138486;138487;138488;138489;138490;138491 85253;85254;85255;85256;85257;85258;85259;85260;85261 85261 7 GIEEVGPNNVPYIVATITSNSAGGQPVSLANLK Unmodified 3308.7252 0.72523529 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 2 1 2 2 2 54.896 53.448 3;4 5.9588E-26 26432 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 177.92 176.15 3906100000 643240000 599690000 613750000 14637000 4036700 14694000 310070000 245400000 281950000 0 0 0 170600000 233370000 150180000 0 0 0 200010000 225190000 199290000 0 0 0 7455 397 7271 138492;138493;138494;138495;138496;138497;138498;138499;138500;138501;138502;138503;138504;138505;138506;138507;138508;138509;138510;138511;138512;138513;138514;138515;138516;138517;138518 85262;85263;85264;85265;85266;85267;85268;85269;85270;85271;85272;85273;85274;85275;85276;85277;85278 85264 17 GIEGSSLDVPENIVHSGK Unmodified 1836.9218 0.92175626 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 2 1 1 31.15 29.941 2;3 1.8904E-22 13889 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 236.28 193.88 3093800000 853370000 684870000 670000000 0 0 0 0 0 96583000 0 0 0 324010000 46061000 301890000 0 0 0 65300000 51660000 0 0 0 0 7456 423 7272 138519;138520;138521;138522;138523;138524;138525;138526;138527;138528;138529;138530;138531;138532 85279;85280;85281;85282;85283;85284;85285;85286;85287;85288;85289 85284 11 GIEIDPIGR Unmodified 968.5291 0.52909508 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.467 30.111 2 0.00019889 14128 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.67 107.03 159230000 22240000 23235000 19351000 0 0 0 12715000 12235000 11693000 0 0 0 7357800 7227700 8982100 0 0 0 11815000 11127000 11250000 0 0 0 7457 162 7273 138533;138534;138535;138536;138537;138538;138539;138540;138541;138542;138543;138544 85290;85291;85292;85293;85294;85295;85296;85297;85298 85293 9 GIEIEADVVLK Unmodified 1184.6653 0.66525421 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 2 2 1 4 3 1 43.166 41.608 2 0.00015859 19427 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 96.331 88.111 96651000 0 7492800 7245600 0 0 0 12763000 13774000 0 0 0 0 8556400 7911400 4802400 0 0 0 13413000 13633000 7059500 0 0 0 7458 338 7274 138545;138546;138547;138548;138549;138550;138551;138552;138553;138554;138555;138556;138557;138558;138559;138560;138561;138562;138563;138564;138565;138566;138567 85299;85300;85301;85302;85303;85304;85305;85306;85307;85308 85302 5 GIEIHDEPDAWYLHVGAGENWHR Unmodified 2700.2469 0.246947 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 37.61 35.918 4 0.00090167 17287 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 63.726 62.697 100370000 12544000 9980200 0 0 0 0 12225000 0 16810000 0 0 0 8076400 0 0 0 0 0 13389000 12940000 14405000 0 0 0 7459 186 7275 138568;138569;138570;138571;138572;138573;138574;138575 85309 85309 1 GIEIVSYQGQDNIYSDLTAGR Unmodified 2298.1128 0.11280451 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 1 1 1 1 1 1 2 2 1 48.474 47.434 2;3 5.0183E-22 23252 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 213.32 208.42 153030000 32484000 29241000 23768000 0 0 0 0 0 4617700 0 0 0 4683800 4582900 4643400 4501800 5606600 6144100 15537000 12666000 4555800 0 0 0 7460 887 7276 138576;138577;138578;138579;138580;138581;138582;138583;138584;138585;138586;138587;138588;138589;138590;138591;138592;138593 85310;85311;85312;85313;85314 85311 2 GIELEVR Unmodified 814.45487 0.45486751 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 2 2 3 2 1 1 2 2 2 1 2 2 2 24.211 23.309 1;2 0.0015703 7974 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 127.66 24.374 1286300000 6281800 8863200 6294600 12864000 10708000 10549000 40156000 352210000 292440000 11518000 122880000 10546000 0 17127000 0 87851000 75907000 79073000 0 21034000 0 38666000 41692000 39615000 7461 1745 7277 138594;138595;138596;138597;138598;138599;138600;138601;138602;138603;138604;138605;138606;138607;138608;138609;138610;138611;138612;138613;138614;138615;138616;138617;138618;138619;138620;138621;138622;138623;138624;138625 85315;85316;85317;85318;85319;85320;85321;85322;85323;85324;85325;85326 85322 12 GIELEVRK Unmodified 942.54983 0.54983053 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 16.081 16.357 2 0.10189 4783 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 53.166 16.146 16063000 0 0 0 0 417750 413290 0 0 0 3730000 0 1866500 0 0 0 5057500 1788100 2789700 0 0 0 0 0 0 7462 1745 7278 138626;138627;138628;138629;138630;138631;138632 85327 85327 1 GIEPHLVGATILHAVVR Unmodified 1781.0312 0.031187555 112 P05523 mutM Formamidopyrimidine-DNA glycosylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.399 37.036 4 0.0001249 17160 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 54.234 53.656 93861000 4142900 5318400 3598100 0 0 0 5905500 7036100 6023900 0 0 0 4991200 3986900 6042200 8601200 13911000 10473000 3504600 5019500 3560600 0 1745800 0 7463 112 7279 138633;138634;138635;138636;138637;138638;138639;138640;138641;138642;138643;138644;138645;138646;138647;138648 85328;85329;85330;85331;85332;85333 85333 6 GIEPVITLSSGEAK Unmodified 1399.7559 0.75586013 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.536 33.088 2 3.9034E-09 16090 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.58 146.58 363160000 24807000 25944000 24146000 0 0 0 28265000 31254000 27702000 0 0 0 30847000 31145000 27940000 0 0 0 36627000 35665000 38813000 0 0 0 7464 1548 7280 138649;138650;138651;138652;138653;138654;138655;138656;138657;138658;138659;138660 85334;85335;85336;85337;85338;85339;85340;85341;85342;85343;85344;85345 85335 12 GIEVGHIFQLGTK Unmodified 1397.7667 0.76669959 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.811 35.154 2 4.1316E-09 16973 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.17 160.58 1229500000 101840000 107520000 95861000 0 0 0 101660000 97832000 106550000 0 0 0 93709000 88598000 85017000 0 0 0 113300000 113460000 124180000 0 0 0 7465 1120 7281 138661;138662;138663;138664;138665;138666;138667;138668;138669;138670;138671;138672 85346;85347;85348 85347 3 GIEVKPGEIVIPFTD Unmodified 1612.8712 0.87122424 624 P0AB26 yceB Uncharacterized lipoprotein YceB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.957 50.653 2 0.0080303 20263 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 83.045 74.316 100630000 6055900 5619800 4472500 0 0 3236300 11853000 0 0 9001100 8250000 8798500 8084200 4364400 4489500 0 0 0 8139400 0 9486200 0 4744800 4030600 7466 624 7282 138673;138674;138675;138676;138677;138678;138679;138680;138681;138682;138683;138684;138685;138686;138687 85349 85349 1 GIEVLLLSDR Unmodified 1113.6394 0.63937381 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.878 44.33 2 3.2227E-12 21568 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 207.95 198.74 1723300000 164730000 169960000 146140000 0 536140 763370 128440000 131090000 114470000 0 855590 0 137740000 135740000 125930000 0 0 0 153710000 159380000 153240000 0 522670 0 7467 295 7283 138688;138689;138690;138691;138692;138693;138694;138695;138696;138697;138698;138699;138700;138701;138702;138703 85350;85351;85352;85353;85354;85355;85356;85357;85358;85359;85360;85361 85357 12 GIFSEYGLLK Unmodified 1125.607 0.60701105 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.657 43.071 2 7.3833E-06 20795 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.08 91.981 860550000 0 0 0 1098500 0 0 87847000 0 80945000 0 0 0 0 119310000 112060000 0 0 0 153420000 156450000 148770000 0 0 651000 7468 638 7284 138704;138705;138706;138707;138708;138709;138710;138711;138712;138713;138714;138715 85362;85363;85364;85365;85366;85367;85368;85369;85370;85371 85368 10 GIGALYVR Unmodified 847.49159 0.49158736 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.393 25.098 2 8.0375E-05 11068 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 137.5 109.19 1083200000 0 0 0 6588500 5643700 5700700 135830000 122520000 115830000 0 3373300 3269300 91111000 88444000 77258000 0 0 0 142820000 127580000 139050000 5969400 6213200 5960900 7469 228 7285 138716;138717;138718;138719;138720;138721;138722;138723;138724;138725;138726;138727;138728;138729;138730;138731;138732;138733;138734;138735 85372;85373;85374;85375;85376;85377;85378;85379;85380;85381;85382;85383;85384;85385;85386 85382 15 GIGDKINAMLK Oxidation (M) 1174.638 0.63799361 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 5 4 4 4 5 5 24.14 23.437 2;3 3.3087E-05 5862 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 133.13 115.15 333270000 0 0 0 0 0 0 0 0 0 19997000 25803000 26099000 0 0 0 49779000 46489000 56234000 0 0 0 32273000 35542000 41052000 7470 463 7286 138736;138737;138738;138739;138740;138741;138742;138743;138744;138745;138746;138747;138748;138749;138750;138751;138752;138753;138754;138755;138756;138757;138758;138759;138760;138761;138762;138763;138764;138765;138766;138767;138768;138769;138770;138771;138772;138773;138774;138775 85387;85388;85389;85390;85391;85392;85393;85394;85395;85396;85397;85398;85399;85400;85401;85402;85403;85404;85405;85406;85407;85408;85409;85410;85411 85387 264 24 GIGDKINAMLK Unmodified 1158.6431 0.64307898 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 3 3 1 1 2 29.643 28.542 2;3 2.8377E-08 10868 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 194.06 167.67 15343000000 0 0 0 0 2147700 0 0 0 0 615580000 623650000 580600000 0 0 0 3728000000 3504000000 4041600000 0 0 0 630110000 594490000 1022700000 7471 463 7286 138776;138777;138778;138779;138780;138781;138782;138783;138784;138785;138786;138787;138788;138789;138790;138791;138792;138793;138794;138795 85412;85413;85414;85415;85416;85417;85418;85419;85420;85421;85422;85423;85424;85425;85426;85427;85428 85425 14 GIGLTHALADVSGLAFDR Unmodified 1811.953 0.95299681 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.875 46.46 2;3 8.111E-14 23009 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.88 132.75 520540000 52718000 53359000 57556000 0 0 0 44800000 36294000 36086000 0 0 0 31187000 33353000 32748000 0 0 0 44885000 54355000 43199000 0 0 0 7472 1784 7287 138796;138797;138798;138799;138800;138801;138802;138803;138804;138805;138806;138807;138808;138809;138810;138811;138812;138813;138814;138815;138816;138817;138818;138819 85429;85430;85431;85432;85433;85434;85435;85436;85437;85438;85439;85440;85441;85442;85443 85430 12 GIGPAYEDK Unmodified 948.45526 0.45526144 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.731 15.547 2 0.0034482 4877 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 81.548 78.97 4673800000 363590000 386040000 374910000 3442900 2395000 2796400 392880000 343900000 355050000 0 0 0 467410000 333930000 273200000 0 0 0 461200000 464720000 448330000 0 0 0 7473 333 7288 138820;138821;138822;138823;138824;138825;138826;138827;138828;138829;138830;138831;138832;138833;138834 85444;85445;85446;85447;85448;85449 85448 4 GIGRPSTYASIISTIQDR Unmodified 1934.0221 0.022139011 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 1 2 1 1 1 2 2 2 1 1 1 37.76 36.294 2;3 4.354E-07 12146 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 105.89 102.65 490670000 40646000 37342000 33558000 0 0 0 4630500 6941700 4107800 0 0 0 45061000 38816000 42251000 8549400 9064500 7294100 56410000 64346000 64929000 8860200 9918600 7945300 7474 124 7289 138835;138836;138837;138838;138839;138840;138841;138842;138843;138844;138845;138846;138847;138848;138849;138850;138851;138852;138853;138854;138855;138856;138857;138858;138859 85450;85451;85452;85453;85454;85455;85456;85457;85458;85459;85460;85461;85462;85463;85464 85451 15 GIGYATALAFVEAGAK Unmodified 1537.814 0.81404372 1103 P15047 entA 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.442 50.194 2 3.0862E-06 24442 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 112.86 105.72 161700000 5372300 5093700 6482200 0 0 0 9123100 8364500 9125700 0 0 0 14281000 12019000 11159000 0 0 0 31758000 25057000 23862000 0 0 0 7475 1103 7290 138860;138861;138862;138863;138864;138865;138866;138867;138868;138869;138870;138871 85465;85466;85467;85468;85469;85470 85465 6 GIGYLPQEASIFR Unmodified 1449.7616 0.76161421 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.564 43.938 2 9.6304E-05 17979 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.616 90.599 300700000 15660000 15312000 13269000 3499800 3194200 1844600 31066000 24383000 29456000 8624200 5923300 6752500 17076000 16720000 13762000 0 0 0 28171000 29421000 26044000 3682800 2881300 3962100 7476 559 7291 138872;138873;138874;138875;138876;138877;138878;138879;138880;138881;138882;138883;138884;138885;138886;138887;138888;138889;138890;138891;138892 85471;85472;85473;85474;85475 85471 5 GIHNLSQAPQEGCVLTIGNFDGVHR Unmodified 2718.3296 0.32963077 983 P0AG40 ribF Riboflavin biosynthesis protein RibF;Riboflavin kinase;FMN adenylyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 1 2 2 2 2 34.937 33.472 3;4 3.8642E-22 16032 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 129.84 126.38 664570000 83638000 83358000 57492000 0 0 0 50782000 52544000 51032000 0 0 0 43307000 31241000 33145000 0 0 0 58094000 60298000 59642000 0 0 0 7477 983 7292 138893;138894;138895;138896;138897;138898;138899;138900;138901;138902;138903;138904;138905;138906;138907;138908;138909;138910;138911;138912;138913;138914;138915 85476;85477;85478;85479;85480 85478 5 GIHQLANVENQTPR Unmodified 1575.8118 0.8117523 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 1 1 2 1 2 2 1 2 16.737 17.164 2;3 1.3323E-14 6097 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 193.28 175.47 638520000 0 0 0 660240 0 0 71841000 63672000 107670000 38316000 22675000 10204000 60088000 55710000 56476000 9146500 7240700 9893600 32398000 32475000 43138000 5175100 4570000 7174700 7478 1739 7293 138916;138917;138918;138919;138920;138921;138922;138923;138924;138925;138926;138927;138928;138929;138930;138931;138932;138933;138934;138935;138936;138937;138938;138939;138940;138941;138942;138943;138944;138945;138946 85481;85482;85483;85484;85485;85486;85487;85488;85489;85490;85491;85492;85493;85494;85495;85496;85497;85498;85499;85500;85501;85502;85503 85489 23 GIHTLEHLFAGFMR Unmodified 1627.8293 0.82931662 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 3 2 3 3 3 2 2 1 3 3 3 3 3 3 2 2 1 44.575 42.926 2;3;4 2.8189E-56 20832 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 310 306.24 5145100000 650350000 575120000 572400000 9297800 9997300 9122000 561070000 500180000 480520000 9689500 10089000 5100500 280790000 230680000 237370000 0 0 0 333220000 344380000 314570000 3552300 5048900 2527000 7479 1577 7294 138947;138948;138949;138950;138951;138952;138953;138954;138955;138956;138957;138958;138959;138960;138961;138962;138963;138964;138965;138966;138967;138968;138969;138970;138971;138972;138973;138974;138975;138976;138977;138978;138979;138980;138981;138982;138983;138984;138985;138986;138987;138988;138989;138990;138991;138992;138993;138994;138995;138996;138997;138998;138999 85504;85505;85506;85507;85508;85509;85510;85511;85512;85513;85514;85515;85516;85517;85518;85519;85520;85521;85522;85523;85524;85525;85526;85527;85528;85529;85530;85531;85532;85533;85534;85535;85536;85537;85538;85539;85540;85541;85542;85543;85544;85545;85546;85547;85548;85549 85517 46 GIHTLEHLFAGFMR Oxidation (M) 1643.8242 0.82423125 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 3 3 3 3 2 3 3 3 3 3 42.547 40.981 3;4 0.00018588 21120 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 76.326 74.186 276950000 34731000 34539000 28687000 0 0 0 25965000 22140000 22190000 0 0 0 10069000 17642000 17712000 0 0 0 20648000 22814000 19811000 0 0 0 7480 1577 7294 139000;139001;139002;139003;139004;139005;139006;139007;139008;139009;139010;139011;139012;139013;139014;139015;139016;139017;139018;139019;139020;139021;139022;139023;139024;139025;139026;139027;139028;139029;139030;139031;139032;139033 85550;85551;85552;85553;85554;85555;85556;85557;85558;85559;85560;85561;85562;85563;85564 85562 558 15 GIIAVSR Unmodified 714.43882 0.43882351 538 P0A9M5 gpt Xanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 17.521 18.229 2 0.00045564 6774 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.67 62.579 2004100000 149290000 152400000 131600000 771890 808320 870400 221320000 192080000 164050000 0 0 0 140850000 137920000 127440000 0 0 0 190600000 196140000 198010000 0 0 0 7481 538 7295 139034;139035;139036;139037;139038;139039;139040;139041;139042;139043;139044;139045;139046;139047;139048;139049;139050 85565;85566;85567;85568;85569;85570;85571;85572;85573;85574;85575 85567 11 GIIDFLNQYEEAVK Unmodified 1637.8301 0.83008771 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 54.93 53.492 2 8.1353E-08 25326 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 135.8 126.79 280670000 18623000 17213000 16729000 0 0 0 0 0 32769000 0 0 2386400 27058000 31842000 26786000 0 0 0 38987000 34185000 34087000 0 0 0 7482 1421 7296 139051;139052;139053;139054;139055;139056;139057;139058;139059;139060;139061 85576;85577;85578 85578 2 GIIELSR Unmodified 786.45995 0.45995289 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 3 2 1 1 1 2 1 1 1 2 2 1 2 2 2 25.744 24.637 2 1.088E-07 11336 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.07 61.442 25111000000 838770000 825670000 710890000 2100100000 2204700000 2328100000 921780000 974480000 896900000 2940900 342830000 349320000 507290000 506410000 465030000 108550000 84422000 86972000 914610000 961010000 918920000 2966400000 2615600000 2479200000 7483 133 7297 139062;139063;139064;139065;139066;139067;139068;139069;139070;139071;139072;139073;139074;139075;139076;139077;139078;139079;139080;139081;139082;139083;139084;139085;139086;139087;139088;139089;139090;139091;139092;139093;139094;139095;139096;139097;139098;139099;139100;139101;139102 85579;85580;85581;85582;85583;85584;85585;85586;85587;85588;85589;85590;85591;85592;85593;85594;85595;85596;85597;85598;85599;85600;85601;85602;85603;85604;85605;85606;85607;85608;85609;85610;85611;85612;85613;85614;85615;85616;85617;85618;85619;85620;85621;85622;85623;85624 85624 46 GIIIHYVPALPR Unmodified 1347.8027 0.80269117 110 P05458 ptrA Protease 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 35.742 34.174 2;3 4.7682E-05 16419 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.058 84.328 231590000 22975000 11589000 21816000 0 0 0 20897000 16485000 19777000 0 0 0 15207000 15028000 15530000 0 0 0 24570000 25295000 22418000 0 0 0 7484 110 7298 139103;139104;139105;139106;139107;139108;139109;139110;139111;139112;139113;139114;139115;139116;139117;139118;139119;139120;139121;139122;139123;139124;139125 85625;85626;85627;85628;85629;85630;85631;85632;85633;85634;85635;85636;85637;85638;85639 85633 12 GIILAGGSGTR Unmodified 1000.5665 0.56654322 1489;1641 P37744;P61887 rmlA1;rmlA2 Glucose-1-phosphate thymidylyltransferase 1;Glucose-1-phosphate thymidylyltransferase 2 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.133 20.54 2 5.6683E-05 8114 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.12 103.2 1423400000 73418000 69333000 73330000 0 0 435830 120060000 119910000 110600000 0 0 0 123220000 122660000 102380000 0 0 0 183320000 166350000 158370000 0 0 0 7485 1489;1641 7299 139126;139127;139128;139129;139130;139131;139132;139133;139134;139135;139136;139137;139138 85640;85641;85642;85643;85644;85645;85646;85647;85648;85649;85650;85651 85643 12 GIIYHVDATQSVGK Unmodified 1486.778 0.77799256 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.467 21.747 2 2.2409E-35 9079 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 265.61 241.58 592740000 71264000 68723000 67787000 0 1037500 1588200 39805000 41877000 36852000 0 0 0 37236000 26207000 37544000 0 0 0 50816000 56069000 55931000 0 0 0 7486 228 7300 139139;139140;139141;139142;139143;139144;139145;139146;139147;139148;139149;139150;139151;139152 85652;85653;85654;85655;85656;85657;85658;85659;85660;85661;85662;85663 85652 12 GIIYHVDATQSVGKLPIDLSQLK Unmodified 2494.3795 0.3795243 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 44.7 43.013 4 0.002205 15299 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 58.366 57.184 25588000 0 0 0 6384100 4251000 3534200 0 0 0 1939400 2165700 2040800 0 0 0 0 0 1366200 0 0 0 0 0 3906400 7487 228 7301 139153;139154;139155;139156;139157;139158;139159;139160 85664;85665;85666 85664 3 GIKDVSFDR Unmodified 1035.5349 0.53490874 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 16.966 17.254 2 0.00037034 4884 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 125.31 100.39 79219000 0 0 0 5312700 5602500 9709500 0 0 0 13727000 13487000 8791900 0 0 0 0 0 0 0 0 0 8741300 7438700 6407700 7488 1031 7302 139161;139162;139163;139164;139165;139166;139167;139168;139169 85667;85668;85669;85670;85671;85672 85669 6 GIKDVVTQPQA Unmodified 1154.6295 0.62953741 480 P0A910 ompA Outer membrane protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.168 21.305 2;3 0.00011875 6511 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 125.82 93.031 1729100000 38763000 37888000 29973000 85255000 77987000 72254000 31156000 32025000 34098000 136670000 128360000 122910000 61450000 59560000 55976000 57849000 38320000 37605000 125280000 125550000 118780000 76132000 77321000 67892000 7489 480 7303 139170;139171;139172;139173;139174;139175;139176;139177;139178;139179;139180;139181;139182;139183;139184;139185;139186;139187;139188;139189;139190;139191;139192;139193;139194;139195 85673;85674;85675;85676;85677;85678;85679;85680;85681;85682;85683;85684;85685;85686;85687;85688;85689;85690;85691;85692;85693;85694;85695 85673 22 GIKREEIER Unmodified 1128.6251 0.62512073 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.833 11.249 3 0.00064875 2031 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 82.287 37.126 179360000 0 0 0 38254000 35225000 35365000 6044600 3864200 0 6450200 5981200 7207800 0 0 0 6654500 5572500 5913000 0 0 0 9829600 7295200 5706300 7490 1048 7304 139196;139197;139198;139199;139200;139201;139202;139203;139204;139205;139206;139207;139208;139209 85696;85697;85698;85699 85699 4 GIKVEVSGR Unmodified 943.54508 0.5450795 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 12.756 13.317 2 0.10413 2851 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 51.066 26.863 28922000 0 0 0 4094700 3420600 5265400 0 0 0 3041200 4221900 3655600 0 0 0 0 0 0 0 0 0 0 0 5222500 7491 374 7305 139210;139211;139212;139213;139214;139215;139216 85700;85701 85701 2 GILANYGIELR Unmodified 1217.6768 0.67682195 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.681 41.15 2 1.1663E-07 14565 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 171.99 130.96 606920000 54620000 43343000 44116000 1407900 1103600 1192400 48204000 45726000 47568000 2030700 2331800 2129700 32859000 33313000 32784000 27355000 17887000 27417000 44999000 49320000 47208000 0 0 0 7492 37 7306 139217;139218;139219;139220;139221;139222;139223;139224;139225;139226;139227;139228;139229;139230;139231;139232;139233;139234;139235;139236;139237 85702;85703;85704;85705;85706;85707;85708;85709;85710;85711;85712;85713;85714;85715;85716 85704 15 GILASIEQQNK Unmodified 1199.651 0.65100113 825 P0AE01 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 28.092 26.959 2 1.5788E-14 11851 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 218.06 198.96 1121000000 77421000 74834000 69054000 0 0 0 104010000 86965000 77997000 0 0 0 105060000 94617000 106970000 352840 0 0 108820000 114390000 100500000 0 0 0 7493 825 7307 139238;139239;139240;139241;139242;139243;139244;139245;139246;139247;139248;139249;139250 85717;85718;85719;85720;85721;85722;85723;85724;85725;85726;85727;85728 85726 12 GILDPEDAR Unmodified 984.48762 0.4876242 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.045 23.998 2 0.00024392 10683 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 122.74 92.13 150280000 0 14195000 12009000 3781500 4076200 2902600 15816000 14519000 16828000 0 0 0 0 0 7029100 0 0 0 22403000 17375000 19347000 0 0 0 7494 1417 7308 139251;139252;139253;139254;139255;139256;139257;139258;139259;139260;139261;139262 85729;85730;85731;85732;85733;85734 85733 6 GILDSFK Unmodified 778.4225 0.42250475 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 1 1 1 1 1 1 2 3 3 35.613 33.918 1;2 0.004364 13485 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 116.11 48.082 5388300000 167840000 154800000 146600000 37269000 35321000 34429000 432610000 432300000 427930000 143980000 158960000 152610000 375130000 391740000 359980000 24122000 28151000 33143000 509820000 510780000 429670000 128500000 129190000 143380000 7495 645 7309 139263;139264;139265;139266;139267;139268;139269;139270;139271;139272;139273;139274;139275;139276;139277;139278;139279;139280;139281;139282;139283;139284;139285;139286;139287;139288;139289;139290;139291;139292;139293;139294;139295;139296;139297;139298 85735;85736;85737;85738;85739;85740;85741;85742;85743;85744;85745;85746;85747;85748;85749;85750;85751;85752;85753;85754;85755;85756;85757;85758;85759 85739 25 GILEALMGNAR Unmodified 1143.607 0.60702783 732 P0ACI6 asnC Regulatory protein AsnC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 49.239 47.813 2 0.062975 23313 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 57.96 43.122 23536000 4961800 6122000 3973600 0 0 0 3366100 2879700 0 0 0 0 0 0 2232600 0 0 0 0 0 0 0 0 0 7496 732 7310 139299;139300;139301;139302;139303;139304 85760;85761 85761 0 GILEQYGHK Unmodified 1043.54 0.53999412 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.371 17.051 2 0.00031503 6044 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.54 112.86 789460000 60158000 60689000 58717000 523050 0 774220 70823000 70814000 84162000 2083500 0 0 61021000 58791000 57829000 1611200 0 753560 77331000 54582000 68794000 0 0 0 7497 540 7311 139305;139306;139307;139308;139309;139310;139311;139312;139313;139314;139315;139316;139317;139318;139319;139320;139321 85762;85763;85764;85765;85766;85767;85768;85769;85770;85771 85763 9 GILLGEQLLADGTTMDWHLK Unmodified 2210.1405 0.14053959 1923 P77649 ydiU UPF0061 protein YdiU yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 53.623 52.176 3 6.2233E-05 25794 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.768 68.776 129120000 18837000 19301000 20699000 0 0 0 5400400 7954900 4862600 0 0 0 7186600 10343000 8089500 0 0 0 15121000 11328000 0 0 0 0 7498 1923 7312 139322;139323;139324;139325;139326;139327;139328;139329;139330;139331;139332 85772;85773;85774;85775 85773 4 GILMGLVR Unmodified 857.51569 0.51569363 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.556 36.883 2 0.00010749 18301 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 159.65 138.67 795370000 126880000 121670000 108900000 0 0 0 62289000 53119000 50515000 0 0 0 40621000 35890000 38269000 0 0 0 63386000 50401000 43437000 0 0 0 7499 713 7313 139333;139334;139335;139336;139337;139338;139339;139340;139341;139342;139343;139344 85776;85777;85778;85779;85780;85781;85782;85783;85784;85785;85786;85787 85777 12 GILPIDTYK Unmodified 1018.5699 0.56989727 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.678 34.045 2 0.00025255 15689 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 121.99 114.84 1612400000 149540000 135520000 113510000 0 0 0 172500000 3567900 2396900 0 1310500 0 125120000 128330000 128800000 0 0 0 217730000 226490000 207620000 0 0 0 7500 29 7314 139345;139346;139347;139348;139349;139350;139351;139352;139353;139354;139355;139356;139357 85788;85789;85790;85791;85792;85793;85794;85795;85796 85795 9 GILPIDTYKK Unmodified 1146.6649 0.66486028 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.517 24.488 3 0.12891 10358 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 30.392 23.789 57349000 4030100 0 3325600 1592100 1562200 1557700 4254600 4855000 5384100 1141000 0 3189100 2182900 3497000 2069000 995390 1005400 674230 5476500 6418700 4138700 0 0 0 7501 29 7315 139358;139359;139360;139361;139362;139363;139364;139365;139366;139367;139368;139369;139370;139371;139372;139373;139374;139375;139376 85797 85797 0 GILSVPVPVGK Unmodified 1064.6594 0.65938097 1879 P76621 csiD Protein CsiD yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.033 37.359 2 0.0015862 18658 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.334 78.334 275900000 63646000 46984000 45675000 0 0 0 28144000 27382000 26271000 0 0 0 3380800 3330200 2754200 0 0 0 10342000 9353700 8636700 0 0 0 7502 1879 7316 139377;139378;139379;139380;139381;139382;139383;139384;139385;139386;139387;139388 85798;85799;85800;85801;85802 85798 5 GILSWVGGK Unmodified 915.5178 0.51780212 1893 P77293 yfdH Bactoprenol glucosyl transferase homolog from prophage CPS-53 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.603 38.988 2 0.0072664 15315 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 67.981 59.651 142940000 0 0 3204700 1393100 1574400 1523900 10549000 9594300 9279000 5722100 4761600 6191500 8460100 9228700 7319300 1677100 1096200 1219500 18522000 15968000 17293000 4064200 4296900 0 7503 1893 7317 139389;139390;139391;139392;139393;139394;139395;139396;139397;139398;139399;139400;139401;139402;139403;139404;139405;139406;139407;139408;139409 85803;85804;85805;85806;85807;85808;85809 85806 5 GIMEGEYDHLPEQAFYMVGSIEEAVEK Unmodified 3070.394 0.39398967 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 3 2 2 2 2 2 2 2 1 1 1 3 2 2 2 2 1 55.152 53.787 2;3 1.6787E-52 26271 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 278.82 261.74 4444500000 115860000 108100000 112340000 48544000 33175000 41233000 229320000 234920000 244030000 117450000 135540000 158080000 348300000 355040000 297930000 69316000 62542000 109340000 418600000 445110000 390830000 111510000 123590000 133760000 7504 646 7318 139410;139411;139412;139413;139414;139415;139416;139417;139418;139419;139420;139421;139422;139423;139424;139425;139426;139427;139428;139429;139430;139431;139432;139433;139434;139435;139436;139437;139438;139439;139440;139441;139442;139443;139444;139445;139446;139447;139448;139449;139450;139451 85810;85811;85812;85813;85814;85815;85816;85817;85818;85819;85820;85821;85822;85823;85824;85825;85826;85827;85828;85829;85830;85831;85832 85823 23 GIMLGQSNFLAR Unmodified 1305.6863 0.68634078 1972 Q47146 fadE Acyl-coenzyme A dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 40.043 38.323 2 0.022155 13528 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 55.064 35.749 6406100 0 0 0 1647600 2891400 1867100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7505 1972 7319 139452;139453;139454 85833 85833 1 GIMQQMNVK Unmodified 1047.5205 0.52052101 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 22.292 22.039 2 0.00061985 9568 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.79 114.86 154480000 0 0 0 0 0 0 0 31500000 34199000 0 0 0 19186000 19235000 18142000 0 0 0 9224800 12433000 10562000 0 0 0 7506 427 7320 139455;139456;139457;139458;139459;139460;139461;139462;139463 85834;85835;85836;85837;85838;85839;85840 85834 7 GINEEVVR Unmodified 914.48214 0.48214489 1911 P77522 sufB FeS cluster assembly protein SufB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 15.379 16.192 2 0.0022949 5470 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.69 52.93 177700000 0 18702000 17580000 0 0 0 28154000 24615000 23186000 0 0 0 12748000 11221000 9700300 0 0 0 16217000 0 15579000 0 0 0 7507 1911 7321 139464;139465;139466;139467;139468;139469;139470;139471;139472;139473;139474 85841;85842;85843;85844;85845 85845 5 GINFIACPTCSR Unmodified 1394.6435 0.64348969 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.828 30.425 2 1.5992E-06 13703 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 147.4 143.76 917260000 78667000 71388000 72546000 2137700 2306500 2084700 80429000 82195000 76440000 1193100 0 1186600 68243000 56738000 58521000 886740 0 853440 81508000 84163000 85208000 3501900 3586700 3473300 7508 1649 7322 139475;139476;139477;139478;139479;139480;139481;139482;139483;139484;139485;139486;139487;139488;139489;139490;139491;139492;139493;139494;139495;139496 85846;85847;85848;85849;85850;85851;85852;85853;85854;85855;85856;85857 85856 12 GINFVFATGR Unmodified 1080.5716 0.5716286 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 40.008 38.285 2 1.8129E-06 19033 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.88 154.42 311070000 0 0 19255000 0 0 0 39813000 36030000 38710000 0 0 0 25806000 21776000 19139000 0 0 0 39867000 35768000 34900000 0 0 0 7509 1313 7323 139497;139498;139499;139500;139501;139502;139503;139504;139505;139506 85858;85859;85860;85861;85862;85863;85864;85865;85866 85859 9 GINSYYLTSDGSTMSYR Unmodified 1913.8465 0.84654241 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 2 2 2 2 2 35.95 34.185 2;3 4.7125E-24 15855 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 252.42 252.42 530980000 22785000 20413000 16387000 8305700 6317300 6987900 31033000 30569000 38298000 20731000 16832000 13863000 32354000 29724000 35970000 0 0 0 52987000 46898000 48032000 16289000 17373000 18830000 7510 1426 7324 139507;139508;139509;139510;139511;139512;139513;139514;139515;139516;139517;139518;139519;139520;139521;139522;139523;139524;139525;139526;139527;139528;139529;139530;139531;139532;139533;139534;139535;139536;139537;139538;139539;139540;139541;139542 85867;85868;85869;85870;85871;85872;85873;85874;85875;85876;85877;85878;85879;85880;85881;85882;85883;85884;85885;85886;85887;85888 85886 22 GIPADKISAR Unmodified 1026.5822 0.58219329 480 P0A910 ompA Outer membrane protein A yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 13.251 13.751 2 0.10331 2979 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 46.462 39.567 27326000 0 0 0 3200100 3598300 3501100 0 0 0 3166700 2503500 2407800 0 0 0 0 0 0 0 0 0 3211800 2668500 3068000 7511 480 7325 139543;139544;139545;139546;139547;139548;139549;139550;139551 85889 85889 1 GIPADLEDR Unmodified 984.48762 0.4876242 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 22.33 22.094 2 0.00027013 9281 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.46 88.521 2253900000 631980000 568990000 553160000 0 0 0 136250000 150840000 145880000 0 0 0 0 0 0 0 0 0 0 66793000 0 0 0 0 7512 195 7326 139552;139553;139554;139555;139556;139557;139558 85890;85891;85892;85893;85894;85895;85896;85897;85898;85899 85895 10 GIPADLEDRR Unmodified 1140.5887 0.58873523 195 P08997 aceB Malate synthase A yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 16.926 17.551 3 0.012122 6272 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.699 54.17 36610000 0 13193000 12552000 0 0 0 5510900 5353700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7513 195 7327 139559;139560;139561;139562 85900 85900 1 GIPAFSIYGHDVQDADDTSIPADVEEK Unmodified 2888.3352 0.33521247 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 44.128 42.648 3 7.9912E-08 20679 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.072 66.568 141530000 22205000 19578000 19469000 0 0 0 9051300 10969000 0 0 0 0 11208000 9213400 8728900 0 0 0 12083000 10520000 8501800 0 0 0 7514 1758 7328 139563;139564;139565;139566;139567;139568;139569;139570;139571;139572;139573 85901;85902;85903;85904;85905;85906;85907;85908 85905 8 GIPALPAGGAHIR Unmodified 1228.704 0.70403976 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 2 2 24.251 23.308 2;3 1.5732E-06 10202 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 103.91 98.067 1098200000 46676000 47895000 46847000 4227100 3526300 3818000 108790000 105700000 99197000 10310000 9838600 12057000 76677000 63018000 45836000 4228400 4081400 3509100 128360000 136850000 112390000 6090900 9822000 8439700 7515 294 7329 139574;139575;139576;139577;139578;139579;139580;139581;139582;139583;139584;139585;139586;139587;139588;139589;139590;139591;139592;139593;139594;139595;139596;139597;139598;139599;139600;139601;139602;139603;139604;139605;139606;139607;139608;139609;139610;139611;139612;139613;139614;139615;139616;139617 85909;85910;85911;85912;85913;85914;85915;85916;85917;85918;85919;85920;85921;85922;85923;85924;85925;85926;85927;85928;85929;85930;85931;85932;85933;85934;85935;85936;85937;85938;85939 85923 31 GIPIHVFIAGR Unmodified 1178.6924 0.69241244 1521 P39304 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase UlaD yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 34.174 32.656 3 0.0011374 15852 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 70.399 60.693 61635000 0 0 0 0 0 0 6910500 8540900 7270100 0 0 0 6093900 6872300 5710800 0 0 0 6540300 7012200 6684000 0 0 0 7516 1521 7330 139618;139619;139620;139621;139622;139623;139624;139625;139626 85940;85941;85942;85943;85944;85945;85946;85947 85941 8 GIPSLDESFVVIHFR Unmodified 1714.9043 0.90425571 894 P0AEX5 prkB Probable phosphoribulokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.008 48.601 3 3.0796E-09 22688 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 123.02 120.72 255410000 37247000 36146000 27867000 0 0 0 21177000 20388000 22878000 0 0 0 12827000 11965000 13105000 0 0 0 18990000 15850000 16971000 0 0 0 7517 894 7331 139627;139628;139629;139630;139631;139632;139633;139634;139635;139636;139637;139638 85948;85949;85950;85951;85952;85953;85954;85955;85956;85957;85958;85959 85959 12 GIPTGIHPEEGVSAAEVIMTVLHAGGK Unmodified 2669.3847 0.38468604 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.669 52.437 4 0.00019629 25975 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 65.071 63.403 2717900000 204620000 146020000 121770000 5747100 3819500 9607700 202500000 179270000 176040000 28053000 19102000 24840000 239440000 218510000 179520000 19535000 44287000 37956000 269600000 267690000 287010000 13354000 19590000 0 7518 883 7332 139639;139640;139641;139642;139643;139644;139645;139646;139647;139648;139649;139650;139651;139652;139653;139654;139655;139656;139657;139658;139659;139660;139661 85960;85961;85962;85963;85964;85965;85966;85967;85968;85969;85970;85971;85972;85973;85974;85975;85976;85977;85978;85979;85980;85981 85967 22 GIPTLLLFK Unmodified 1000.6321 0.63210359 571 P0AA25 trxA Thioredoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.905 49.762 2 0.00073027 24013 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 102.72 102.72 13243000000 1308800000 1130400000 1254600000 29158000 29825000 25926000 1262000000 1220300000 1081900000 34159000 26208000 17278000 863310000 820010000 813160000 9048800 9464200 10826000 1205500000 1063300000 968060000 17588000 22522000 19729000 7519 571 7333 139662;139663;139664;139665;139666;139667;139668;139669;139670;139671;139672;139673;139674;139675;139676;139677;139678;139679;139680;139681;139682;139683;139684;139685 85982;85983;85984;85985;85986;85987;85988;85989;85990;85991;85992;85993;85994;85995;85996;85997;85998;85999;86000;86001;86002;86003;86004;86005;86006;86007 85998 26 GIPVFNAPFSNTR Unmodified 1418.7306 0.73064844 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.522 40.819 2 5.5294E-07 19975 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 177.78 156.91 1235600000 230430000 236680000 227990000 1425000 1627300 0 66397000 69536000 58382000 0 0 0 47320000 43187000 44017000 0 0 0 75758000 64665000 68185000 0 0 0 7520 555 7334 139686;139687;139688;139689;139690;139691;139692;139693;139694;139695;139696;139697;139698;139699 86008;86009;86010;86011;86012;86013;86014;86015;86016;86017;86018;86019 86011 12 GIPVGTLAIGK Unmodified 1024.6281 0.62808085 979 P0AG18 purE N5-carboxyaminoimidazole ribonucleotide mutase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.7 32.26 2 0.00030848 15381 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.601 80.69 599260000 164580000 155260000 136590000 0 0 0 12739000 11172000 8975900 0 0 0 14951000 12312000 12615000 0 0 0 23759000 22943000 23358000 0 0 0 7521 979 7335 139700;139701;139702;139703;139704;139705;139706;139707;139708;139709;139710;139711 86020;86021;86022;86023;86024;86025;86026;86027;86028;86029 86026 10 GIPVIATSSTCTFALRDEYPEVLNVDNK Unmodified 3108.5438 0.54376545 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 49.437 47.818 3 6.5337E-24 19352 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 179.38 176.41 68507000 0 0 0 0 0 0 5651800 5231500 5389300 13954000 16014000 15537000 0 0 0 0 0 0 0 0 0 4190400 0 2539600 7522 500 7336 139712;139713;139714;139715;139716;139717;139718;139719 86030;86031;86032 86030 3 GIPYTTVR Unmodified 905.49707 0.49706667 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 21.816 21.421 2 0.033312 8682 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 63.301 42.037 19285000 0 0 0 0 0 0 4518400 0 10501000 4265600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7523 997 7337 139720;139721;139722 86033 86033 1 GIQALFVR Unmodified 902.53379 0.53378653 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.034 34.431 2 0.00034806 17001 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 144.29 122.75 1708700000 124960000 121950000 105230000 495980 0 631710 150380000 162140000 179420000 0 0 0 119180000 110830000 112210000 0 0 0 171760000 183550000 165010000 950580 0 0 7524 702 7338 139723;139724;139725;139726;139727;139728;139729;139730;139731;139732;139733;139734;139735;139736;139737 86034;86035;86036;86037;86038;86039;86040;86041;86042;86043;86044;86045 86034 12 GIQEQLK Unmodified 814.45487 0.45486751 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.692 14.31 2 0.0045648 3283 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 103.28 52.318 14850000000 1158100000 1280700000 1095200000 9349800 9040700 9795200 1351100000 1143200000 1152600000 10146000 8920400 7620200 1214300000 956280000 910610000 3411200 3867200 3386900 1501300000 1598700000 1410600000 0 6268600 5318300 7525 264 7339 139738;139739;139740;139741;139742;139743;139744;139745;139746;139747;139748;139749;139750;139751;139752;139753;139754;139755;139756;139757;139758;139759;139760 86046;86047;86048;86049;86050;86051;86052;86053;86054;86055;86056;86057;86058;86059;86060;86061;86062;86063;86064;86065 86058 20 GIQESAK Unmodified 731.38137 0.38136821 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 1 1 1 1 1 1 1 1 3 3 1 1 1 8.893 9.6517 2 0.0071055 1602 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 92.692 35.229 208690000 10680000 1674900 2081900 0 0 42447 0 597750 0 0 0 0 13837000 13787000 13141000 0 0 0 19050000 38388000 36053000 19877000 24194000 15286000 7526 723 7340 139761;139762;139763;139764;139765;139766;139767;139768;139769;139770;139771;139772;139773;139774;139775;139776;139777;139778;139779;139780 86066;86067;86068;86069;86070;86071;86072;86073 86073 8 GIQLQVSDAELAAR Unmodified 1469.7838 0.78380622 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.617 34.061 2 1.2653E-15 16201 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 202.16 153.36 155030000 30462000 24597000 22185000 0 0 0 12368000 9779500 8242700 0 0 0 5958000 5707000 8781800 0 0 0 6850200 9359000 10735000 0 0 0 7527 118 7341 139781;139782;139783;139784;139785;139786;139787;139788;139789;139790;139791;139792 86074;86075;86076;86077;86078;86079 86077 6 GIRPDQALDR Unmodified 1139.6047 0.60471964 556 P0A9T4 tas Protein tas yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.847 15.634 2 5.605E-09 5215 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 196.52 184.56 526330000 38608000 36519000 36977000 0 0 0 57294000 63091000 60475000 0 0 0 36970000 38696000 29869000 0 0 0 44405000 41850000 41577000 0 0 0 7528 556 7342 139793;139794;139795;139796;139797;139798;139799;139800;139801;139802;139803;139804 86080;86081;86082;86083;86084;86085;86086;86087;86088;86089;86090;86091 86084 12 GIRPGAYCEPK Unmodified 1246.6128 0.61284149 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 1 12.459 13.25 2;3 1.2806E-05 3805 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.84 137.37 6725200000 1018600000 698520000 820980000 9677700 8002700 9059600 414110000 359290000 357300000 0 3707700 0 386930000 377650000 378300000 1606200 3496400 0 645500000 660710000 567480000 0 4315300 0 7529 1444 7343 139805;139806;139807;139808;139809;139810;139811;139812;139813;139814;139815;139816;139817;139818;139819;139820;139821;139822;139823;139824;139825;139826;139827;139828;139829;139830;139831;139832;139833;139834;139835;139836;139837;139838;139839 86092;86093;86094;86095;86096;86097;86098;86099;86100;86101;86102;86103;86104;86105;86106;86107;86108;86109;86110;86111;86112;86113;86114 86101 23 GISHFITEHIAPFYER Unmodified 1915.9581 0.95808219 973 P0AFZ1 sseB Protein SseB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 4 4 4 1 2 4 5 4 4 5 4 2 2 2 36.23 34.569 2;3;4 4.8981E-14 18311 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 142.54 140.27 954140000 51786000 14802000 21401000 0 0 0 111180000 108960000 98630000 0 1436700 2989600 71420000 77147000 55617000 0 0 0 110060000 121160000 99106000 3477100 2517600 2454200 7530 973 7344 139840;139841;139842;139843;139844;139845;139846;139847;139848;139849;139850;139851;139852;139853;139854;139855;139856;139857;139858;139859;139860;139861;139862;139863;139864;139865;139866;139867;139868;139869;139870;139871;139872;139873;139874;139875;139876;139877;139878;139879;139880;139881;139882;139883;139884;139885;139886;139887;139888;139889;139890;139891 86115;86116;86117;86118;86119;86120;86121;86122;86123;86124;86125;86126;86127;86128;86129;86130;86131;86132;86133;86134;86135;86136;86137;86138 86115 24 GISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYR Unmodified 4056.851 0.85098245 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.097 52.657 4 6.1799E-34 25787 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 181.18 181.17 529290000 43134000 42530000 45300000 0 0 0 16819000 29558000 23530000 0 0 0 41624000 48602000 36155000 0 0 0 70726000 68672000 62640000 0 0 0 7531 346 7345 139892;139893;139894;139895;139896;139897;139898;139899;139900;139901;139902;139903 86139;86140;86141;86142;86143 86140 5 GISLLDAFGAANDVLK Unmodified 1602.8617 0.86172219 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.92 53.659 2 8.3356E-14 20550 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 208.72 191.35 2473100000 148050000 170740000 169050000 36250000 43842000 38818000 131400000 121430000 123400000 166040000 171150000 154220000 113440000 125890000 106780000 20558000 17176000 20943000 148730000 146270000 157300000 58120000 39977000 43567000 7532 502 7346 139904;139905;139906;139907;139908;139909;139910;139911;139912;139913;139914;139915;139916;139917;139918;139919;139920;139921;139922;139923;139924;139925;139926;139927 86144;86145;86146;86147;86148;86149;86150;86151;86152;86153;86154;86155;86156 86145 11 GISPAGLATSFEK Unmodified 1276.6663 0.66631685 1277 P25894 loiP Metalloprotease LoiP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.036 35.194 2 0.14682 16935 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 47.288 43.134 99073000 10535000 9148900 7829900 0 0 0 6014000 6561500 6535300 2237400 2350300 1931000 5337200 3723900 5106200 0 0 0 10591000 9955500 11217000 0 0 0 7533 1277 7347 139928;139929;139930;139931;139932;139933;139934;139935;139936;139937;139938;139939;139940;139941;139942 86157;86158 86157 0 GISTEGVLPGK Unmodified 1056.5815 0.58152458 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.91 23.07 2 0.00017505 10164 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.69 79.271 438210000 30016000 26634000 24416000 8755000 9012000 8788400 24876000 24462000 23130000 0 3255300 3485400 25886000 23911000 23821000 2450800 1747200 1649800 55346000 51194000 53424000 3741200 3848900 4357500 7534 1343 7348 139943;139944;139945;139946;139947;139948;139949;139950;139951;139952;139953;139954;139955;139956;139957;139958;139959;139960;139961;139962;139963;139964;139965 86159;86160;86161;86162;86163;86164;86165;86166;86167;86168;86169;86170;86171;86172;86173 86166 12 GISYETATFPWAASGR Unmodified 1712.8158 0.81583463 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 45.239 43.833 2;3 2.1209E-18 21347 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 231.92 226.14 25289000000 1394500000 1274500000 1295200000 2106300000 2007700000 1749500000 1249500000 1177800000 1113200000 249390000 241420000 218940000 817000000 809880000 736190000 89801000 56559000 63663000 1581700000 1564400000 1315600000 1438000000 1405800000 1332600000 7535 542 7349 139966;139967;139968;139969;139970;139971;139972;139973;139974;139975;139976;139977;139978;139979;139980;139981;139982;139983;139984;139985;139986;139987;139988;139989;139990;139991;139992;139993;139994;139995;139996;139997;139998;139999;140000;140001;140002;140003;140004;140005;140006;140007;140008;140009;140010;140011;140012;140013 86174;86175;86176;86177;86178;86179;86180;86181;86182;86183;86184;86185;86186;86187;86188;86189;86190;86191;86192;86193;86194;86195;86196;86197;86198;86199;86200;86201;86202;86203;86204;86205;86206;86207;86208;86209;86210;86211;86212 86196 39 GITCIDLSR Unmodified 1033.5226 0.5226295 1694 P64602 mlaB Probable phospholipid ABC transporter-binding protein MlaB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 27.743 26.41 2 0.013027 11504 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 69.598 50.816 41034000 0 0 0 0 0 0 0 16002000 0 7263200 6084200 5071400 0 0 0 1825500 1405400 0 0 0 0 0 3383000 0 7536 1694 7350 140014;140015;140016;140017;140018;140019;140020;140021;140022;140023 86213;86214;86215;86216 86216 4 GITDILVVDNLK Unmodified 1298.7446 0.74456717 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 1 2 2 1 1 1 1 2 2 2 2 2 2 1 1 1 49.39 48.002 2;3 3.511E-08 23349 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 187.64 176.49 2333300000 186460000 149970000 155080000 848280 954180 893490 239890000 227280000 223070000 25138000 18632000 21678000 161050000 158980000 165340000 0 0 0 199590000 230480000 162980000 1455100 1903200 1591400 7537 1716 7351 140024;140025;140026;140027;140028;140029;140030;140031;140032;140033;140034;140035;140036;140037;140038;140039;140040;140041;140042;140043;140044;140045;140046;140047;140048;140049;140050;140051;140052;140053;140054 86217;86218;86219;86220;86221;86222;86223;86224;86225;86226;86227;86228;86229;86230;86231;86232;86233;86234;86235;86236;86237 86223 21 GITDILVVDNLKDGTK Unmodified 1699.9356 0.93561541 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 41.109 39.418 3 1.1482E-06 16149 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 100.41 89.149 39985000 0 0 0 0 0 0 0 0 0 12642000 7229500 9456900 0 0 0 0 1983600 1846300 0 0 0 2243400 2364800 2218500 7538 1716 7352 140055;140056;140057;140058;140059;140060;140061;140062 86238;86239;86240 86238 3 GITEFIEQDTEEAR Unmodified 1636.758 0.75804498 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.276 37.417 2 7.4149E-35 18435 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 252.42 232.21 193160000 15792000 17864000 13782000 2307300 3315400 2948100 11869000 11780000 12044000 5139700 5464200 5222100 10903000 8787100 9649800 0 0 0 16396000 17263000 14359000 2645800 2971500 2661600 7539 1083 7353 140063;140064;140065;140066;140067;140068;140069;140070;140071;140072;140073;140074;140075;140076;140077;140078;140079;140080;140081;140082;140083 86241;86242;86243;86244;86245;86246;86247;86248;86249 86242 8 GITEPTPTFSACFGAAFLSLHPTQYAEVLVK Unmodified 3351.685 0.68495038 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.57 53.122 3 8.157E-18 26067 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.33 143.49 613900000 99744000 82091000 93160000 0 0 0 26685000 41008000 33181000 0 0 0 35164000 25741000 28704000 0 0 0 55499000 43975000 48945000 0 0 0 7540 1195 7354 140084;140085;140086;140087;140088;140089;140090;140091;140092;140093;140094;140095 86250;86251;86252;86253 86253 4 GITFDSGGYSIK Unmodified 1243.6085 0.60846762 1456 P37095 pepB Peptidase B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.283 31.985 2 2.3589E-06 15188 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 142.43 138.22 2121400000 167320000 157940000 170140000 736190 631500 1127700 187290000 176830000 176460000 0 0 0 164940000 163170000 174250000 0 662850 776880 167800000 188850000 222480000 0 0 0 7541 1456 7355 140096;140097;140098;140099;140100;140101;140102;140103;140104;140105;140106;140107;140108;140109;140110;140111;140112 86254;86255;86256;86257;86258 86255 5 GITHEIQIPDISTK Unmodified 1550.8304 0.83042206 667 P0ABK9 nrfA Cytochrome c-552 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.872 30.491 3 0.01127 13772 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 38.995 34.73 99845000 2030000 0 0 0 0 0 10342000 12247000 8920800 0 0 0 14080000 12293000 12002000 0 0 0 8463400 11630000 7836600 0 0 0 7542 667 7356 140113;140114;140115;140116;140117;140118;140119;140120;140121;140122 86259 86259 1 GITILAK Unmodified 714.46398 0.46397563 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 3 2 3 3 3 3 22.426 22.041 1;2 0.033546 9352 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.21 11.309 3432600000 247750000 243730000 208560000 586150 416720 0 325900000 306700000 275910000 0 0 0 376440000 65964000 296800000 0 0 0 325810000 324420000 433650000 0 0 0 7543 1388 7357 140123;140124;140125;140126;140127;140128;140129;140130;140131;140132;140133;140134;140135;140136;140137;140138;140139;140140;140141;140142;140143;140144;140145;140146;140147;140148;140149;140150;140151;140152;140153;140154;140155;140156;140157;140158;140159 86260;86261;86262;86263;86264;86265;86266;86267;86268;86269 86266 6 GITINTSHVEYDTPTR Unmodified 1802.8799 0.87989145 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 3 3 3 6 5 5 2 3 3 6 5 6 2 2 2 6 4 6 3 2 2 24.264 23.332 2;3;4 1.657E-49 9984 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 348.97 339.65 110840000000 8542700000 8542300000 9030500000 204460000 209430000 208540000 8948100000 9567700000 9284500000 137290000 141280000 128300000 8690900000 8330700000 8375000000 78473000 68890000 64022000 9890500000 10358000000 9679500000 114770000 114290000 128490000 7544 1048 7358 140160;140161;140162;140163;140164;140165;140166;140167;140168;140169;140170;140171;140172;140173;140174;140175;140176;140177;140178;140179;140180;140181;140182;140183;140184;140185;140186;140187;140188;140189;140190;140191;140192;140193;140194;140195;140196;140197;140198;140199;140200;140201;140202;140203;140204;140205;140206;140207;140208;140209;140210;140211;140212;140213;140214;140215;140216;140217;140218;140219;140220;140221;140222;140223;140224;140225;140226;140227;140228;140229;140230;140231;140232;140233;140234;140235;140236;140237;140238;140239;140240;140241;140242;140243;140244;140245;140246;140247;140248;140249 86270;86271;86272;86273;86274;86275;86276;86277;86278;86279;86280;86281;86282;86283;86284;86285;86286;86287;86288;86289;86290;86291;86292;86293;86294;86295;86296;86297;86298;86299;86300;86301;86302;86303;86304;86305;86306;86307;86308;86309;86310;86311;86312;86313;86314;86315;86316;86317;86318;86319;86320;86321;86322;86323;86324;86325;86326;86327;86328;86329;86330;86331;86332;86333;86334;86335;86336;86337;86338;86339;86340;86341;86342;86343;86344;86345;86346;86347;86348;86349;86350;86351;86352;86353;86354;86355;86356;86357;86358;86359;86360;86361;86362;86363 86336 92 GITITSAATTAFWSGMAK Unmodified 1812.908 0.90802046 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 5 4 1 1 3 3 3 1 2 2 5 5 5 3 3 3 1 52.14 50.816 2;3 1.4435E-29 24301 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 221.8 210.59 6439900000 559900000 435680000 386220000 6976800 6237600 0 432470000 437340000 412290000 10102000 13273000 14836000 566180000 575550000 545220000 0 0 0 706780000 711300000 612690000 6854400 0 0 7545 264 7359 140250;140251;140252;140253;140254;140255;140256;140257;140258;140259;140260;140261;140262;140263;140264;140265;140266;140267;140268;140269;140270;140271;140272;140273;140274;140275;140276;140277;140278;140279;140280;140281;140282;140283;140284;140285;140286;140287;140288;140289;140290;140291;140292;140293;140294;140295;140296;140297;140298;140299;140300;140301;140302 86364;86365;86366;86367;86368;86369;86370;86371;86372;86373;86374;86375;86376;86377;86378;86379;86380;86381;86382;86383;86384;86385;86386;86387;86388;86389;86390;86391;86392;86393;86394;86395;86396;86397;86398;86399;86400;86401;86402;86403;86404;86405;86406;86407;86408;86409;86410;86411;86412;86413;86414;86415;86416;86417;86418;86419;86420;86421;86422;86423;86424;86425;86426;86427;86428;86429;86430;86431;86432;86433;86434;86435;86436;86437;86438;86439;86440;86441 86388 75 GITITSAATTAFWSGMAK Oxidation (M) 1828.9029 0.90293508 264 P0A6M8 fusA Elongation factor G yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 45.946 44.436 2 0.0020003 21684 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 64.313 51.546 37761000 0 0 0 0 0 0 5917000 4995900 0 0 0 0 4002300 5153000 0 0 0 0 4420700 6735200 6536900 0 0 0 7546 264 7359 140303;140304;140305;140306;140307;140308;140309 86442 86442 111 1 GITLPSNSTGGVK Unmodified 1229.6616 0.66156582 1972 Q47146 fadE Acyl-coenzyme A dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 22.907 22.441 2 0.14379 9190 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 39.148 17.062 22433000 5609900 5101700 0 0 0 0 2305400 0 0 0 0 0 0 0 2126500 0 0 0 0 4309400 2980300 0 0 0 7547 1972 7360 140310;140311;140312;140313;140314;140315 86443 86443 0 GITQVSQAISEMDK Unmodified 1505.7396 0.73955814 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 36.958 35.391 2 0.00041735 12490 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 75.788 71.705 49878000 11134000 13940000 11548000 3613200 4343800 3698600 0 0 0 0 0 0 0 0 1600000 0 0 0 0 0 0 0 0 0 7548 114 7361 140316;140317;140318;140319;140320;140321;140322 86444;86445;86446 86445 2 GITVNPVQSTITEETFQTLLVSR Unmodified 2532.3435 0.34353273 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 54.711 53.269 2;3 8.2516E-136 26139 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 403.17 400.39 3584400000 303720000 288960000 258410000 2106300 0 0 316960000 281480000 279690000 0 0 0 226240000 256120000 228410000 0 0 0 400720000 400060000 341510000 0 0 0 7549 954 7362 140323;140324;140325;140326;140327;140328;140329;140330;140331;140332;140333;140334;140335;140336;140337;140338;140339;140340;140341;140342;140343;140344;140345;140346;140347 86447;86448;86449;86450;86451;86452;86453;86454;86455;86456;86457;86458;86459;86460;86461;86462;86463;86464;86465;86466;86467 86454 21 GITVNVVAPGFIETDMTR Oxidation (M) 1934.9772 0.97716265 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 1 47.158 45.795 2 2.6059E-09 21337 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 119.69 105.24 58354000 0 0 0 0 0 0 0 4730600 0 0 0 0 6274100 7371300 6475300 0 0 0 20061000 7261400 6180600 0 0 0 7550 868 7363 140348;140349;140350;140351;140352;140353;140354;140355 86468;86469;86470;86471;86472 86471 396 5 GITVSDHGAIK Unmodified 1096.5877 0.58767259 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 2 2 2 2 1 1 1 1 1 2 13.382 14.226 2;3 0.00022792 4390 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 116.73 101.36 449700000 20229000 13561000 34740000 0 0 0 67020000 64041000 53422000 0 0 0 17590000 28199000 20831000 0 0 0 35896000 32216000 61961000 0 0 0 7551 1421 7364 140356;140357;140358;140359;140360;140361;140362;140363;140364;140365;140366;140367;140368;140369;140370;140371;140372 86473;86474;86475;86476;86477;86478 86475 6 GIVDIPVYPLK Unmodified 1212.7118 0.71181048 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.882 45.555 2 9.8847E-05 22269 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.07 90.987 909050000 58174000 53037000 48425000 16350000 16057000 14826000 46422000 45863000 39706000 48983000 44830000 46903000 34949000 31237000 29689000 9808600 7830500 9729200 64618000 70663000 67781000 35207000 36037000 31932000 7552 252 7365 140373;140374;140375;140376;140377;140378;140379;140380;140381;140382;140383;140384;140385;140386;140387;140388;140389;140390;140391;140392;140393;140394;140395;140396 86479;86480;86481;86482;86483;86484;86485;86486;86487;86488;86489;86490;86491;86492;86493;86494;86495;86496;86497;86498;86499;86500;86501 86496 23 GIVEAVHER Unmodified 1008.5352 0.53524309 1519 P39286 rsgA Putative ribosome biogenesis GTPase RsgA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.023 13.886 2 0.00053834 3973 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.66 97.25 113790000 13877000 15272000 13441000 0 0 0 6426900 8958500 8853800 0 0 0 9202700 8205100 7163300 0 0 0 8641100 7893600 5852000 0 0 0 7553 1519 7366 140397;140398;140399;140400;140401;140402;140403;140404;140405;140406;140407;140408 86502 86502 1 GIVEEGHK Unmodified 867.44503 0.4450311 846 P0AEC3 arcB Aerobic respiration control sensor protein ArcB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.353 11.166 2 0.010548 2509 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.029 81.574 287570000 25687000 26555000 27304000 0 0 0 40799000 27697000 33065000 0 0 0 19384000 25045000 18418000 0 0 0 21252000 22365000 0 0 0 0 7554 846 7367 140409;140410;140411;140412;140413;140414;140415;140416;140417;140418;140419 86503 86503 0 GIVIINPNNPTGAVYSK Unmodified 1755.9519 0.95193418 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.963 36.326 2 2.8742E-10 16791 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 167.44 166.39 388470000 31283000 30713000 30025000 1365900 1321600 1182600 26253000 29178000 30774000 0 3191100 2526200 27383000 25403000 24785000 2500800 0 1337600 39173000 33376000 37067000 3226300 3244600 3156500 7555 491 7368 140420;140421;140422;140423;140424;140425;140426;140427;140428;140429;140430;140431;140432;140433;140434;140435;140436;140437;140438;140439;140440;140441 86504;86505;86506;86507;86508;86509;86510;86511;86512 86512 9 GIVLLDHAER Unmodified 1121.6193 0.61930707 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 2 2 2 1 22.803 22.235 2;3 4.7114E-07 9423 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 175.38 159.79 990720000 7601300 5606300 5775800 0 0 0 170410000 144830000 151050000 0 0 0 106370000 97611000 88815000 0 0 0 72128000 62062000 77184000 0 0 1273500 7556 506 7369 140442;140443;140444;140445;140446;140447;140448;140449;140450;140451;140452;140453;140454;140455;140456;140457;140458;140459;140460;140461;140462;140463 86513;86514;86515;86516;86517;86518;86519;86520;86521;86522;86523;86524;86525;86526;86527 86521 15 GIVMFEK Unmodified 822.43096 0.43096094 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.788 26.523 2 0.040351 11614 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 64.803 53.242 466650000 41327000 43052000 39220000 871390 0 635030 35899000 38417000 37915000 587680 0 0 36531000 37210000 36124000 0 0 0 42252000 38056000 38553000 0 0 0 7557 902 7370 140464;140465;140466;140467;140468;140469;140470;140471;140472;140473;140474;140475;140476;140477;140478 86528;86529;86530;86531;86532;86533;86534;86535;86536;86537 86535 10 GIVMFEK Oxidation (M) 838.42588 0.42587556 902 P0AF08 mrp Protein mrp yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.299 27.148 2 0.12293 12773 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 54.537 31.914 1918900000 76736000 56781000 55312000 0 0 0 230500000 256790000 221900000 0 0 0 227800000 210560000 208020000 0 0 296330 135690000 123080000 115420000 0 0 0 7558 902 7370 140479;140480;140481;140482;140483;140484;140485;140486;140487;140488;140489;140490;140491 86538;86539 86538 2 GIVTLLER Unmodified 899.54402 0.54401687 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 34.985 33.517 2 0.00060799 16492 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130.77 73.294 1284600000 148160000 132090000 121870000 481490 0 0 95749000 95408000 96830000 0 0 0 85206000 86882000 82807000 0 0 0 102370000 126790000 109970000 0 0 0 7559 1237 7371 140492;140493;140494;140495;140496;140497;140498;140499;140500;140501;140502;140503;140504 86540;86541;86542;86543;86544;86545;86546;86547;86548;86549;86550;86551 86540 12 GIVVVNLTQCMSGK Unmodified 1504.7742 0.77416951 492 P0A962 ansA L-asparaginase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.011 37.558 2 1.7647E-14 17596 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 229.73 227.64 113730000 19207000 19896000 18025000 0 0 0 0 0 0 0 0 0 21765000 17370000 17471000 0 0 0 0 0 0 0 0 0 7560 492 7372 140505;140506;140507;140508;140509;140510 86552;86553;86554;86555;86556 86554 5 GIVWPDAIAPFQVAILPMNMHK Unmodified 2447.2858 0.28576404 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.008 53.537 3 4.338E-06 26345 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.049 84.979 2105100000 158120000 155350000 115770000 0 0 0 156920000 153430000 161780000 0 0 0 192310000 170970000 177120000 0 0 0 221170000 234050000 206470000 1631900 0 0 7561 1120 7373 140511;140512;140513;140514;140515;140516;140517;140518;140519;140520;140521;140522;140523 86557;86558;86559;86560;86561;86562;86563;86564;86565;86566;86567;86568 86561 10 GIVYIDEIDK Unmodified 1163.6074 0.60740498 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.223 34.471 2 0.00033618 16884 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 109.71 105.4 1642100000 141650000 141650000 121980000 0 0 0 114150000 123580000 124650000 7621500 8664000 0 141500000 128120000 120320000 0 0 0 152640000 160780000 148460000 0 3131000 3222900 7562 244 7374 140524;140525;140526;140527;140528;140529;140530;140531;140532;140533;140534;140535;140536;140537;140538;140539 86569;86570;86571;86572 86570 4 GIVYIDEIDKISR Unmodified 1519.8246 0.8246084 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 2 2 2 2 2 1 1 1 1 2 2 2 38.583 36.888 2;3 3.728E-05 14923 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 116.77 109.91 92615000 3492000 0 0 6665300 6232900 6913500 0 0 0 12429000 11016000 13135000 0 0 0 5486900 613250 2862500 2505600 2180500 0 6404900 5598800 7078500 7563 244 7375 140540;140541;140542;140543;140544;140545;140546;140547;140548;140549;140550;140551;140552;140553;140554;140555;140556;140557;140558;140559;140560;140561;140562;140563;140564 86573;86574;86575;86576;86577;86578;86579 86574 6 GIWNHGSPLFMEIEPR Unmodified 1881.9196 0.91958819 484 P0A927 tsx Nucleoside-specific channel-forming protein tsx yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.169 43.758 3 2.0315E-10 17718 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 111.64 107.81 310640000 19213000 16544000 17188000 0 2511100 2537700 5907400 4682400 4478400 13140000 17309000 13062000 18118000 19269000 15567000 6651800 5409700 3915100 45951000 0 48674000 11265000 10341000 8906500 7564 484 7376 140565;140566;140567;140568;140569;140570;140571;140572;140573;140574;140575;140576;140577;140578;140579;140580;140581;140582;140583;140584;140585;140586 86580;86581;86582;86583;86584;86585;86586;86587 86584 8 GIYDQFVNR Unmodified 1110.5458 0.54580778 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.934 31.458 2 1.1634E-05 14381 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 164.53 158.42 3909800000 895070000 828140000 761340000 2809600 2623700 3132600 166790000 154290000 155720000 0 0 0 88021000 88196000 84569000 0 0 0 239440000 224840000 214870000 0 0 0 7565 1264 7377 140587;140588;140589;140590;140591;140592;140593;140594;140595;140596;140597;140598;140599;140600;140601 86588;86589;86590;86591;86592;86593;86594;86595;86596;86597;86598 86597 10 GIYEAPGMALLHIAYER Unmodified 1902.9662 0.96620404 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.356 47.942 3 5.5439E-05 22506 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 79.805 77.092 653760000 99081000 89743000 87064000 13437000 13341000 11283000 53553000 45669000 48725000 1867900 1845900 0 29425000 0 30444000 0 0 0 39432000 38174000 33671000 5478000 5890600 5635400 7566 235 7378 140602;140603;140604;140605;140606;140607;140608;140609;140610;140611;140612;140613;140614;140615;140616;140617;140618;140619;140620 86599;86600;86601;86602;86603;86604;86605;86606;86607;86608;86609;86610;86611;86612;86613 86612 13 GIYEGPGISIK Unmodified 1132.6128 0.61282471 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.532 30.132 2 0.00097536 14075 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 83.647 75.228 1124300000 46397000 48010000 41784000 18846000 19523000 358940 48983000 44584000 48029000 55117000 48687000 32434000 0 38224000 35319000 14385000 9120200 9629700 133420000 122370000 128450000 59751000 62747000 58125000 7567 215 7379 140621;140622;140623;140624;140625;140626;140627;140628;140629;140630;140631;140632;140633;140634;140635;140636;140637;140638;140639;140640;140641;140642;140643 86614;86615;86616;86617;86618;86619;86620;86621 86620 6 GIYKLETIEGSK Unmodified 1336.7238 0.72383172 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 2 2 2 2 2 2 2 2 2 2 22.436 21.958 2;3 8.8638E-17 7263 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 215.72 195.88 16141000000 3886000 3205100 0 2693000000 2498600000 2230200000 0 0 0 170310000 149350000 227130000 0 0 0 71342000 63743000 63519000 0 0 0 2871600000 2625400000 2469600000 7568 939 7380 140644;140645;140646;140647;140648;140649;140650;140651;140652;140653;140654;140655;140656;140657;140658;140659;140660;140661;140662;140663;140664;140665;140666;140667;140668;140669;140670 86622;86623;86624;86625;86626;86627;86628;86629;86630;86631;86632;86633;86634;86635;86636;86637;86638;86639;86640;86641;86642;86643;86644 86633 23 GKAEPGDK Unmodified 800.40283 0.40283194 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 4.7446 5.615 2 0.0037938 734 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 102.51 87.075 190060000 8685000 9502700 7149300 0 0 0 0 0 0 0 0 0 29145000 32511000 22711000 0 0 0 27012000 24376000 28970000 0 0 0 7569 1805 7381 140671;140672;140673;140674;140675;140676;140677;140678;140679;140680;140681;140682;140683;140684;140685 86645;86646;86647;86648;86649;86650;86651 86646 7 GKANTGVTLEPINSQNAPK Unmodified 1938.0171 0.017053633 1660 P63235 gadC Probable glutamate/gamma-aminobutyrate antiporter yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 19.698 19.844 3 9.1651E-07 6258 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 95.409 93.611 25427000 0 0 0 1915200 1699900 1662700 0 0 0 6692800 6765800 6690500 0 0 0 0 0 0 0 0 0 0 0 0 7570 1660 7382 140686;140687;140688;140689;140690;140691 86652;86653;86654 86653 3 GKAQLEVK Unmodified 871.51272 0.51271674 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.095 13.475 2 0.0059856 3161 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 91.906 2.3565 709940000 0 0 131360000 0 0 43109000 0 175730000 0 58940000 0 70044000 0 0 0 31311000 31759000 29979000 0 2280800 0 48296000 44690000 42441000 7571 154 7383 140692;140693;140694;140695;140696;140697;140698;140699;140700;140701;140702;140703 86655;86656;86657;86658;86659;86660;86661;86662;86663 86655 9 GKATVILAHTIK Unmodified 1250.7711 0.77105669 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 2 3 3 2 2 2 2 3 4 15.33 15.727 2;3 4.5239E-08 3465 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 196.11 184.48 12427000000 0 0 0 2111000000 2213800000 2420800000 0 0 0 112680000 133120000 171040000 0 0 0 122990000 91071000 112860000 0 0 0 1721500000 1603100000 1613400000 7572 939 7384 140704;140705;140706;140707;140708;140709;140710;140711;140712;140713;140714;140715;140716;140717;140718;140719;140720;140721;140722;140723;140724;140725;140726;140727;140728;140729;140730;140731;140732;140733;140734;140735;140736 86664;86665;86666;86667;86668;86669;86670;86671;86672;86673;86674;86675;86676;86677;86678;86679;86680;86681;86682;86683;86684;86685;86686;86687;86688;86689;86690;86691;86692;86693;86694;86695;86696;86697;86698 86698 34 GKDFDDAVAYWK Unmodified 1413.6565 0.65648044 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 31.695 30.369 3 0.00011198 14313 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.879 66.123 86130000 36626000 36760000 0 0 0 0 0 5764300 0 0 0 0 0 0 0 0 0 0 0 0 6980200 0 0 0 7573 225 7385 140737;140738;140739;140740 86699;86700 86699 2 GKDLGSMDVNEVIEK Unmodified 1632.8029 0.80288668 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 1 2 2 2 1 2 2 2 27.592 26.487 2;3 6.2127E-27 12159 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 238.47 229.47 804180000 45734000 44433000 63146000 1838100 1400200 2077000 71323000 85010000 69154000 0 0 0 61400000 52584000 50738000 0 0 1427300 84134000 85391000 84392000 0 0 0 7574 445 7386 140741;140742;140743;140744;140745;140746;140747;140748;140749;140750;140751;140752;140753;140754;140755;140756;140757;140758;140759;140760;140761;140762;140763;140764 86701;86702;86703;86704;86705;86706;86707;86708;86709;86710;86711;86712;86713;86714;86715;86716;86717;86718;86719;86720 86706 20 GKDQGVVVNNVK Unmodified 1255.6884 0.68844927 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.835 12.464 2 3.4344E-40 3403 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 292.2 268.25 702910000 48564000 42254000 36255000 0 0 0 61378000 66724000 62632000 5954000 6560100 8384400 48565000 45106000 55062000 0 0 0 68850000 67119000 62390000 6139600 5148600 5828000 7575 1044 7387 140765;140766;140767;140768;140769;140770;140771;140772;140773;140774;140775;140776;140777;140778;140779;140780;140781;140782 86721;86722;86723;86724;86725;86726;86727;86728 86724 8 GKDVFVPIDYIIGGPK Unmodified 1716.9451 0.94505789 1972 Q47146 fadE Acyl-coenzyme A dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 49.241 47.895 3 0.0035431 17115 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 58.09 53.699 22600000 3482200 4289100 4905600 3127700 3509700 3285700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7576 1972 7388 140783;140784;140785;140786;140787;140788 86729;86730;86731 86731 2 GKDVLIVEDIIDSGNTLSK Unmodified 2015.0787 0.078650837 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.657 46.243 3 0.00030488 22893 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 65.887 50.633 992170000 81739000 90011000 77805000 0 0 0 83278000 94694000 80886000 0 0 0 73354000 71646000 76567000 0 0 0 87289000 83943000 90956000 0 0 0 7577 537 7389 140789;140790;140791;140792;140793;140794;140795;140796;140797;140798;140799;140800 86732;86733;86734;86735 86733 4 GKEEGAR Unmodified 745.37187 0.37186616 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 4.3274 5.161 2 0.0089377 702 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.74 76.947 235210000 15283000 16319000 0 0 0 26891 95007000 0 95211000 0 0 0 0 0 0 0 0 0 5796900 4087100 3474100 0 0 0 7578 1141 7390 140801;140802;140803;140804;140805;140806;140807;140808 86736;86737 86737 2 GKEFIQVAEEAEK Unmodified 1476.746 0.74602373 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 23.194 22.464 2;3 1.3539E-23 9511 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 233.32 221.36 295630000 44485000 47334000 45912000 0 831110 806300 20859000 15801000 20711000 0 0 0 11522000 13507000 12342000 0 0 0 18641000 21458000 21421000 0 0 0 7579 1211 7391 140809;140810;140811;140812;140813;140814;140815;140816;140817;140818;140819;140820;140821;140822;140823;140824;140825;140826;140827;140828;140829;140830;140831;140832;140833;140834 86738;86739;86740;86741;86742;86743;86744;86745;86746;86747;86748;86749;86750;86751;86752;86753;86754 86751 16 GKEFIQVAEEAEKDFR Unmodified 1894.9425 0.94249171 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 36.385 34.641 3;4 7.6011E-19 16623 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 163.91 153.53 1187700000 168200000 171660000 138550000 22629000 14447000 24079000 63498000 78367000 78414000 46013000 32892000 38812000 38184000 37427000 40580000 0 0 0 65674000 63239000 63402000 0 0 1662400 7580 1211 7392 140835;140836;140837;140838;140839;140840;140841;140842;140843;140844;140845;140846;140847;140848;140849;140850;140851;140852;140853;140854;140855;140856;140857;140858;140859;140860;140861;140862;140863;140864;140865;140866;140867;140868;140869;140870;140871 86755;86756;86757;86758;86759;86760;86761;86762;86763;86764;86765;86766;86767;86768;86769;86770;86771;86772;86773;86774;86775;86776;86777;86778;86779;86780;86781;86782;86783;86784;86785;86786;86787;86788 86767 32 GKENQPAMVR Unmodified 1128.571 0.57097667 960 P0AFQ7 ycfH Uncharacterized deoxyribonuclease YcfH yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 10.723 11.618 2 0.00038202 2862 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.69 112.15 54973000 0 0 0 0 0 0 0 0 0 0 0 0 11954000 0 13440000 0 0 0 2848700 14071000 12659000 0 0 0 7581 960 7393 140872;140873;140874;140875;140876;140877 86789;86790;86791;86792 86791 4 GKEQHVTIPAHQVNAEFFEEGK Unmodified 2494.2241 0.2240863 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 2 1 1 3 3 3 1 1 2 3 3 3 3 2 3 1 1 24.635 23.6 3;4;5 3.1597E-63 10615 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 276.73 275.55 3520900000 422120000 502240000 503610000 3713600 2602200 3606100 271080000 278200000 205490000 3107400 4018000 3833800 187190000 157720000 179570000 0 0 0 265150000 256910000 262810000 4067100 0 3866100 7582 508 7394 140878;140879;140880;140881;140882;140883;140884;140885;140886;140887;140888;140889;140890;140891;140892;140893;140894;140895;140896;140897;140898;140899;140900;140901;140902;140903;140904;140905;140906;140907;140908;140909;140910;140911;140912;140913;140914;140915;140916;140917;140918;140919;140920;140921;140922 86793;86794;86795;86796;86797;86798;86799;86800;86801;86802;86803;86804;86805;86806;86807;86808;86809;86810;86811;86812;86813;86814;86815;86816;86817;86818;86819;86820;86821 86800 29 GKEVMESFIK Unmodified 1166.6005 0.60054547 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 22.125 21.863 2 0.00050521 9215 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.75 102.04 73949000 26410000 24632000 22907000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7583 1525 7395 140923;140924;140925 86822;86823 86822 2 GKGAVNYLSVPEFPTDSK Unmodified 1907.9629 0.9628928 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 35.572 34.229 3 1.554E-05 13430 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 90.422 82.83 68396000 0 0 0 684950 0 467240 0 0 0 10831000 0 0 0 0 0 5635900 5719100 4292900 0 0 0 10735000 16176000 13854000 7584 723 7396 140926;140927;140928;140929;140930;140931;140932;140933;140934;140935 86824;86825;86826;86827;86828 86825 5 GKGFAGTVK Unmodified 863.4865 0.48650199 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.126 11.653 2 0.00042577 2354 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 122.52 87.411 332150000 9725200 0 0 25342000 28669000 25797000 0 0 0 16233000 26432000 29111000 4264500 0 2952600 27161000 31684000 28085000 13914000 8359700 7787700 16341000 14236000 16053000 7585 1621 7397 140936;140937;140938;140939;140940;140941;140942;140943;140944;140945;140946;140947;140948;140949;140950;140951;140952;140953 86829;86830;86831;86832;86833;86834;86835;86836;86837;86838;86839;86840 86830 12 GKGFGLR Unmodified 733.42351 0.4235078 588 P0AAC8 iscA Iron-binding protein IscA yes yes 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 12.949 13.192 2 0.13913 3087 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 57.453 48.77 7800100 0 0 0 0 0 0 0 0 0 1831000 0 0 0 0 0 0 0 0 0 0 0 2234600 1945600 1788900 7586 588 7398 140954;140955;140956;140957 86841 86841 1 GKGNVEYWVALIQPGK Unmodified 1757.9465 0.94645487 821 P0ADY7 rplP 50S ribosomal protein L16 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 43.455 41.84 2;3 2.4213E-14 16491 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 213.73 208.98 986890000 90466000 77272000 70483000 17568000 19003000 17652000 27991000 25793000 31364000 32513000 30709000 24906000 33002000 33696000 31666000 33770000 38346000 41788000 60981000 64420000 58975000 41675000 41275000 41571000 7587 821 7399 140958;140959;140960;140961;140962;140963;140964;140965;140966;140967;140968;140969;140970;140971;140972;140973;140974;140975;140976;140977;140978;140979;140980;140981;140982;140983;140984;140985;140986;140987;140988;140989;140990;140991;140992;140993;140994;140995;140996;140997;140998;140999;141000;141001;141002 86842;86843;86844;86845;86846;86847;86848;86849;86850;86851;86852;86853;86854;86855;86856;86857;86858;86859;86860;86861;86862;86863;86864;86865;86866 86853 25 GKGTVSTESGVLNQQPYGFNTR Unmodified 2339.1506 0.150587 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 1 1 27.056 25.844 2;3 4.3746E-88 11623 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 406.52 405.05 2836600000 624640000 674150000 545650000 2001200 1942500 2757100 249880000 233640000 245860000 0 0 0 31204000 26972000 30264000 0 0 0 56597000 52546000 58527000 0 0 0 7588 1038 7400 141003;141004;141005;141006;141007;141008;141009;141010;141011;141012;141013;141014;141015;141016;141017;141018;141019;141020;141021;141022;141023;141024 86867;86868;86869;86870;86871;86872;86873;86874;86875;86876;86877;86878;86879;86880;86881;86882;86883;86884;86885 86880 19 GKHDIEGNR Unmodified 1024.505 0.5050056 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.0765 5.9765 2 5.9412E-05 1383 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.04 147.56 1007000000 329860000 308370000 311600000 3558700 4482500 4742200 7945300 7873500 7891400 0 0 0 4235500 4032200 4472900 0 0 0 0 4630400 3349500 0 0 0 7589 921 7401 141025;141026;141027;141028;141029;141030;141031;141032;141033;141034;141035;141036;141037;141038 86886;86887;86888;86889;86890;86891 86891 6 GKIIGIDLGTTNSCVAIMDGTTPR Unmodified 2489.2618 0.26179371 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 43.025 41.405 3 7.8291E-07 14636 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 103.84 95.848 49778000 0 0 0 17470000 18914000 13394000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7590 293 7402 141039;141040;141041;141042;141043 86892;86893;86894;86895;86896 86894 5 GKLGENVPLLIDK Unmodified 1394.8133 0.81331543 1950 Q2M7R5 yibT Uncharacterized protein YibT yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.158 29.725 3 0.0086556 10150 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 46.282 45.383 52005000 0 0 0 6656500 7373100 5080600 0 0 0 4335200 3256500 3634100 0 0 0 3805600 2668100 3629100 0 0 0 4306300 3064300 4195300 7591 1950 7403 141044;141045;141046;141047;141048;141049;141050;141051;141052;141053;141054;141055 86897;86898;86899 86898 3 GKLTNTADLIR Unmodified 1200.6826 0.68263561 1458 P37146 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta yes yes 0 0 1 By MS/MS 1 11.422 11.739 3 0.091513 2447 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 33.229 10.508 41181000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41181000 0 7592 1458 7404 141056 86900 86900 1 GKLTYTGSLGEVMQESIQAALTVVR Unmodified 2650.4 0.40000175 536 P0A9M0 lon Lon protease yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 55.038 55.093 3 3.6419E-10 20624 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 117.61 115 106120000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27898000 40382000 37838000 0 0 0 0 0 0 7593 536 7405 141057;141058;141059 86901 86901 1 GKNDNKPLSPETWQHLK Unmodified 1991.0225 0.022473362 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 1 1 2 3 3 3 3 3 3 3 3 3 17.928 18.532 2;3;4;5 1.3988E-11 6843 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 120.37 119.07 1631400000 172890000 197920000 213330000 1063900 907030 1973800 141060000 136710000 124630000 0 0 0 87157000 84011000 85984000 0 0 0 124350000 134390000 124970000 0 0 0 7594 1195 7406 141060;141061;141062;141063;141064;141065;141066;141067;141068;141069;141070;141071;141072;141073;141074;141075;141076;141077;141078;141079;141080;141081;141082;141083;141084;141085;141086;141087;141088;141089;141090;141091;141092;141093;141094;141095;141096;141097;141098;141099;141100;141101 86902;86903;86904;86905;86906;86907;86908;86909;86910;86911;86912;86913;86914;86915;86916;86917;86918;86919;86920;86921;86922;86923;86924;86925;86926;86927;86928;86929;86930;86931;86932;86933 86916 32 GKNQLTFNQIALEEAGR Unmodified 1887.9803 0.9802742 37 P00582 polA DNA polymerase I yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 29.862 29.884 3 1.1566E-10 10329 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 139.49 108.75 31620000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11251000 7157400 13212000 0 0 0 0 0 0 7595 37 7407 141102;141103;141104 86934;86935;86936 86934 3 GKPFAPLLEK Unmodified 1098.6437 0.64373091 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 23.712 22.91 2;3 0.00096109 8127 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 95.358 95.358 7871400000 870890000 918690000 925120000 47891000 35902000 39653000 413090000 422030000 414360000 86370000 82929000 83556000 355160000 309220000 292740000 59578000 54644000 49170000 728100000 692680000 675940000 108370000 104010000 101280000 7596 1620 7408 141105;141106;141107;141108;141109;141110;141111;141112;141113;141114;141115;141116;141117;141118;141119;141120;141121;141122;141123;141124;141125;141126;141127;141128;141129;141130;141131;141132;141133;141134;141135;141136;141137;141138;141139;141140;141141;141142;141143;141144;141145;141146;141147;141148;141149;141150;141151;141152 86937;86938;86939;86940;86941;86942;86943;86944;86945;86946;86947;86948;86949;86950;86951;86952;86953;86954;86955;86956;86957;86958;86959;86960;86961;86962;86963;86964;86965;86966;86967;86968;86969;86970;86971;86972;86973;86974;86975;86976;86977;86978;86979;86980;86981;86982 86946 46 GKPGQTVTWYQLR Unmodified 1532.81 0.80996139 604 P0AAN5 yaiA Uncharacterized protein YaiA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.942 24.901 3 0.00036006 11048 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.881 57.219 156330000 36642000 30059000 32494000 0 0 0 0 0 26585000 0 0 0 4990100 5717200 5330500 0 0 0 8449300 0 6061500 0 0 0 7597 604 7409 141153;141154;141155;141156;141157;141158;141159;141160;141161 86983;86984;86985 86985 3 GKPMDTVPLVMMAATK Unmodified 1688.8664 0.86635534 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 38.675 37.235 3 3.5229E-05 18156 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.859 80.825 50539000 18385000 15574000 16579000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7598 71 7410 141162;141163;141164 86986;86987;86988 86986 3 GKSEGEVMR Unmodified 991.47568 0.4756793 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 10.28 10.979 2 0.093198 2499 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 52.937 39.948 114190000 42206000 36902000 35080000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7599 26 7411 141165;141166;141167 86989;86990;86991 86989 3 GKSVEEILGK Unmodified 1058.5972 0.59717465 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 17.911 18.299 3 0.0012158 5287 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 67.726 41.683 20160000 0 0 0 3501600 2946600 2634000 0 0 0 0 0 0 0 0 0 2899000 3766100 4412500 0 0 0 0 0 0 7600 376 7412 141168;141169;141170;141171;141172;141173;141174 86992;86993;86994;86995;86996;86997;86998 86992 7 GKTDLISVAVEPTDSPVIAQALAGEEIKPGPHK Unmodified 3366.8035 0.80348561 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 4 5 2 2 2 4 4 4 1 1 4 4 5 4 5 4 1 2 43.857 42.292 3;4;5;6 8.9964E-44 20562 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 218.63 216.51 14338000000 1278700000 1304700000 1177800000 25412000 32856000 25008000 1533700000 1167500000 1194400000 0 4691400 4550600 954690000 783980000 881290000 0 0 0 1289500000 1329600000 1334400000 0 5803900 9536700 7601 666 7413 141175;141176;141177;141178;141179;141180;141181;141182;141183;141184;141185;141186;141187;141188;141189;141190;141191;141192;141193;141194;141195;141196;141197;141198;141199;141200;141201;141202;141203;141204;141205;141206;141207;141208;141209;141210;141211;141212;141213;141214;141215;141216;141217;141218;141219;141220;141221;141222;141223;141224;141225;141226;141227;141228;141229;141230;141231;141232;141233;141234;141235;141236 86999;87000;87001;87002;87003;87004;87005;87006;87007;87008;87009;87010;87011;87012;87013;87014;87015;87016;87017;87018;87019;87020;87021;87022;87023;87024;87025;87026;87027;87028;87029;87030;87031;87032;87033;87034;87035;87036;87037;87038;87039;87040;87041;87042;87043;87044;87045;87046;87047;87048;87049;87050;87051;87052;87053 87035 55 GKTEQFMTQFLK Unmodified 1456.7384 0.73843593 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 33.809 32.406 2 2.076E-09 15442 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.72 161.05 120560000 10399000 13756000 11008000 0 0 0 11414000 0 11679000 0 0 0 12046000 10919000 7720600 0 0 0 10242000 11457000 9917300 0 0 0 7602 1132 7414 141237;141238;141239;141240;141241;141242;141243;141244;141245;141246;141247 87054;87055;87056;87057;87058;87059 87055 6 GKVECTLR Unmodified 961.5015 0.50150012 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.776 11.592 2 0.0014081 2799 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.99 103.36 407760000 34829000 28323000 38580000 0 0 0 38996000 37328000 39961000 0 0 0 25714000 24734000 27760000 0 0 0 40240000 37117000 34174000 0 0 0 7603 1215 7415 141248;141249;141250;141251;141252;141253;141254;141255;141256;141257;141258;141259 87060;87061;87062;87063;87064;87065 87060 6 GKVPMNIVAQR Unmodified 1211.6809 0.68086147 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 17.67 18.105 2;3 0.0001444 6687 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.549 84.946 6567700000 469880000 416030000 405590000 21075000 19259000 17085000 430100000 410030000 442430000 34253000 28909000 35734000 489790000 497750000 446570000 27877000 13109000 19498000 794890000 703030000 767540000 23239000 28804000 25213000 7604 396 7416 141260;141261;141262;141263;141264;141265;141266;141267;141268;141269;141270;141271;141272;141273;141274;141275;141276;141277;141278;141279;141280;141281;141282;141283;141284;141285;141286;141287;141288;141289;141290;141291;141292;141293;141294;141295;141296;141297;141298;141299;141300;141301;141302;141303;141304;141305;141306;141307 87066;87067;87068;87069;87070;87071;87072;87073;87074;87075;87076;87077;87078;87079;87080;87081;87082;87083;87084;87085;87086;87087;87088;87089;87090;87091;87092;87093;87094;87095;87096;87097;87098;87099;87100;87101;87102;87103;87104;87105;87106;87107;87108;87109;87110;87111 87083 43 GKVPMNIVAQR Oxidation (M) 1227.6758 0.6757761 396 P0A850 tig Trigger factor yes yes 0 1 1 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 17.33 18.076 2 0.021556 6316 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 58.981 51.413 20916000 0 0 0 0 0 0 0 3471400 0 0 0 0 3745000 4320200 4570100 0 0 0 0 0 4809100 0 0 0 7605 396 7416 141308;141309;141310;141311;141312 87112;87113 87112 180 2 GKVPVINPNSMAALGIEVVDVR Unmodified 2277.2515 0.25148702 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 48.791 48.507 3 1.0366E-06 17576 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 98.562 90.172 46548000 0 0 0 0 0 27222000 0 0 0 0 0 0 0 0 0 6234300 7294100 5797400 0 0 0 0 0 0 7606 648 7417 141313;141314;141315;141316 87114;87115;87116;87117 87117 4 GKVQLLGSGSILR Unmodified 1326.7983 0.79833407 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 1 3 3 2 29.072 27.43 2;3 1.0866E-23 8936 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 236.33 229.45 7422900000 0 0 0 1303700000 1219400000 1349600000 0 0 0 44461000 45483000 48189000 0 0 0 0 0 1156500 0 0 0 1117900000 1055200000 1237800000 7607 939 7418 141317;141318;141319;141320;141321;141322;141323;141324;141325;141326;141327;141328;141329;141330;141331;141332;141333;141334;141335;141336;141337;141338;141339 87118;87119;87120;87121;87122;87123;87124;87125;87126;87127;87128;87129;87130;87131 87130 14 GKWNLEQR Unmodified 1029.5356 0.53557744 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 14.446 14.618 2 0.00075007 3686 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 139.31 130.97 108360000 0 0 0 0 0 0 0 0 0 3230100 3647500 4305900 0 0 1870000 26590000 10671000 9248500 0 0 0 15970000 17397000 15427000 7608 205 7419 141340;141341;141342;141343;141344;141345;141346;141347;141348;141349 87132;87133;87134;87135 87133 4 GKYITIENNDALAQLAGHTR Unmodified 2184.1287 0.12872935 513 P0A9E5 fnr Fumarate and nitrate reduction regulatory protein yes yes 0 0 1 By MS/MS 1 29.979 29.991 4 0.021008 9877 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 42.501 41.043 9638400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9638400 0 0 0 0 0 0 7609 513 7420 141350 87136 87136 0 GKYPLEAVSIMATICER Unmodified 1936.9751 0.97505416 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 3 3 1 1 3 2 3 3 2 3 45.802 44.313 2;3 6.7443E-31 21759 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 282.12 281.33 3322200000 219220000 213720000 176430000 0 0 0 410060000 357600000 357380000 3084100 2848200 0 238110000 230130000 207850000 0 0 0 298410000 320950000 286440000 0 0 0 7610 771 7421 141351;141352;141353;141354;141355;141356;141357;141358;141359;141360;141361;141362;141363;141364;141365;141366;141367;141368;141369;141370;141371;141372;141373;141374;141375;141376;141377;141378;141379;141380;141381;141382;141383;141384 87137;87138;87139;87140;87141;87142;87143;87144;87145;87146;87147;87148;87149;87150;87151;87152;87153;87154;87155;87156;87157;87158;87159;87160;87161;87162;87163;87164;87165;87166 87141 29 GKYVAFVLMGESFLR Unmodified 1715.9069 0.90689824 835 P0AE60 cedA Cell division activator CedA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 1 1 48.821 48.862 2;3 0.0005068 18785 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 94.122 90.589 212120000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78541000 65960000 67621000 0 0 0 0 0 0 7611 835 7422 141385;141386;141387;141388 87167;87168;87169;87170 87168 4 GLAALSLPEHQR Unmodified 1290.7044 0.70443369 1407 P33030 yeiR Uncharacterized protein YeiR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 24.758 23.628 2 0.0030317 10359 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 65.157 59.955 43579000 0 0 0 0 0 0 4130100 5860900 5317000 0 0 0 2814600 0 0 0 0 0 9963000 9146400 6347400 0 0 0 7612 1407 7423 141389;141390;141391;141392;141393;141394;141395 87171 87171 0 GLADDDHFVGLAIDEDR Unmodified 1856.8541 0.85407063 1643 P61949 fldA Flavodoxin-1 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.441 38.775 3 1.2273E-06 19306 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 96.666 85.404 116480000 13665000 10509000 9761800 0 0 0 10342000 8975300 12336000 0 0 0 8741400 8395600 7018300 0 0 0 9068200 8899100 8768700 0 0 0 7613 1643 7424 141396;141397;141398;141399;141400;141401;141402;141403;141404;141405;141406;141407 87172;87173;87174;87175;87176;87177;87178;87179 87172 8 GLADDDHFVGLAIDEDRQPELTAER Unmodified 2781.3206 0.32056546 1643 P61949 fldA Flavodoxin-1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 40.15 38.468 3;4 2.0113E-97 18722 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 317.1 310.38 3358100000 379730000 361390000 300820000 755730 1339000 943120 273280000 272260000 298720000 0 0 0 225950000 265710000 58915000 0 0 0 315420000 312170000 290710000 0 0 0 7614 1643 7425 141408;141409;141410;141411;141412;141413;141414;141415;141416;141417;141418;141419;141420;141421;141422;141423;141424;141425;141426;141427;141428;141429;141430;141431;141432;141433 87180;87181;87182;87183;87184;87185;87186;87187;87188;87189;87190;87191;87192;87193;87194 87183 15 GLADTALK Unmodified 787.44397 0.44396847 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.382 18.746 2 0.0091855 5707 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 80.462 33.799 3739900000 49771000 58208000 49232000 3071200 2507600 2409400 54503000 55617000 53424000 339970000 223550000 211850000 56970000 48993000 43910000 619720000 443720000 492580000 60293000 63509000 57880000 258120000 227700000 262390000 7615 458 7426 141434;141435;141436;141437;141438;141439;141440;141441;141442;141443;141444;141445;141446;141447;141448;141449;141450;141451;141452;141453;141454;141455;141456;141457 87195;87196;87197;87198;87199;87200;87201;87202;87203;87204;87205;87206;87207;87208;87209;87210 87199 15 GLAIDTALPSGEEFPR Unmodified 1671.8468 0.84680041 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 43.941 42.164 2 1.0727E-30 20673 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 234.61 222.55 1074400000 131350000 107030000 92057000 0 0 0 85413000 77158000 72366000 22358000 22149000 19002000 54584000 42286000 39585000 0 0 0 86759000 89636000 80242000 17085000 16451000 18914000 7616 1408 7427 141458;141459;141460;141461;141462;141463;141464;141465;141466;141467;141468;141469;141470;141471;141472;141473;141474;141475;141476;141477 87211;87212;87213;87214;87215;87216;87217;87218;87219;87220;87221;87222;87223;87224;87225;87226 87221 16 GLALLDEELAK Unmodified 1170.6496 0.64960415 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 2 2 1 1 1 1 41.833 39.992 2 1.6305E-05 20024 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.35 132.71 2918700000 276140000 268390000 245270000 3650000 4712000 3466400 208990000 222550000 211650000 9954400 9465100 8209900 228920000 219750000 223660000 0 0 0 262190000 265490000 231340000 4407400 5190900 5320700 7617 59 7428 141478;141479;141480;141481;141482;141483;141484;141485;141486;141487;141488;141489;141490;141491;141492;141493;141494;141495;141496;141497;141498;141499;141500;141501;141502;141503 87227;87228;87229;87230;87231;87232;87233;87234;87235;87236;87237;87238;87239;87240;87241 87227 12 GLALLDLIEEGNLGLIR Unmodified 1808.0407 0.040749188 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 55.955 56.01 2;3 5.8119E-50 21279 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 343.34 343.2 15785000000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4274100000 5549800000 5961600000 0 0 0 0 0 0 7618 1089 7429 141504;141505;141506;141507;141508;141509 87242;87243;87244;87245;87246;87247 87246 6 GLANPLTVTR Unmodified 1040.5978 0.59784335 47 P00903 pabA Aminodeoxychorismate synthase component 2 yes yes 0 0 0 By MS/MS 1 27.775 26.869 2 0.068546 12343 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 50.04 7.9313 279340000 0 279340000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7619 47 7430 141510 87248 87248 0 GLAPTTQFDVLIHILSLR Unmodified 1993.136 0.13604656 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.328 53.855 3 1.2663E-07 26402 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 110.22 106.88 1507400000 104460000 105310000 109650000 0 0 0 175330000 178270000 199500000 0 0 0 97201000 76273000 72856000 0 0 0 152960000 137730000 97842000 0 0 0 7620 1868 7431 141511;141512;141513;141514;141515;141516;141517;141518;141519;141520;141521;141522 87249;87250;87251;87252 87252 4 GLAQGTDVSFGSFGLK Unmodified 1582.7991 0.79912193 821 P0ADY7 rplP 50S ribosomal protein L16 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 44.664 43.198 2;3 2.4971E-10 16997 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 174.24 158.35 7167700000 955160000 884430000 764990000 25408000 658410 21978000 260580000 268890000 249660000 60347000 53397000 50708000 444530000 403420000 368040000 84225000 55059000 52168000 669250000 669700000 638130000 65919000 55228000 65800000 7621 821 7432 141523;141524;141525;141526;141527;141528;141529;141530;141531;141532;141533;141534;141535;141536;141537;141538;141539;141540;141541;141542;141543;141544;141545;141546;141547;141548;141549;141550;141551;141552;141553;141554;141555;141556;141557;141558;141559;141560;141561;141562;141563;141564;141565;141566;141567;141568;141569 87253;87254;87255;87256;87257;87258;87259;87260;87261;87262;87263;87264;87265;87266;87267;87268;87269;87270;87271 87258 17 GLASTPFDSEGVR Unmodified 1334.6466 0.64664404 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 30.299 28.477 2 0.061902 13646 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 41.689 28.336 445780000 148090000 0 0 1475900 0 0 0 145780000 0 3489000 2988600 2927900 0 0 0 0 0 0 0 141030000 0 0 0 0 7622 948 7433 141570;141571;141572;141573;141574;141575;141576 87272 87272 1 GLATTIK Unmodified 702.42759 0.42759012 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 3 3 3 1 1 1 1 1 1 14.547 15.053 2 0.0053367 3741 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 100.07 20.613 26921000000 325370000 266510000 301350000 20916000 16493000 17835000 260370000 269540000 274740000 1756600000 1561300000 1644700000 207700000 193370000 189170000 4010700000 3611000000 3843000000 365590000 332870000 308150000 2331600000 2547300000 2264400000 7623 458 7434 141577;141578;141579;141580;141581;141582;141583;141584;141585;141586;141587;141588;141589;141590;141591;141592;141593;141594;141595;141596;141597;141598;141599;141600;141601;141602;141603;141604;141605;141606;141607 87273;87274;87275;87276;87277;87278;87279;87280;87281;87282;87283;87284;87285;87286;87287;87288;87289;87290;87291;87292;87293;87294;87295;87296;87297;87298;87299;87300;87301;87302;87303;87304;87305;87306;87307;87308;87309;87310 87275 38 GLAVESEGATVVFLDEFK Unmodified 1909.9673 0.96730947 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.904 52.533 2 4.5592E-17 25714 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 163.99 148.4 104130000 9645800 6685900 6241900 0 0 0 0 0 0 0 0 0 16330000 18542000 12442000 0 0 0 0 18628000 15617000 0 0 0 7624 1073 7435 141608;141609;141610;141611;141612;141613;141614;141615 87311;87312;87313;87314;87315 87311 5 GLAYAPYADLVWCETSTPDLELAR Unmodified 2710.2949 0.29486798 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 1 1 2 2 3 3 2 3 3 3 2 2 54.731 53.298 2;3;4 2.4341E-71 26192 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 317.83 308.53 9511300000 2430000000 2494800000 2364000000 5563900 5265500 6773400 362930000 348690000 284830000 0 0 0 133760000 135950000 133760000 0 0 0 289490000 270150000 245230000 0 0 0 7625 517 7436 141616;141617;141618;141619;141620;141621;141622;141623;141624;141625;141626;141627;141628;141629;141630;141631;141632;141633;141634;141635;141636;141637;141638;141639;141640;141641;141642;141643;141644;141645;141646;141647;141648;141649;141650;141651;141652;141653;141654 87316;87317;87318;87319;87320;87321;87322;87323;87324;87325;87326;87327;87328;87329;87330;87331;87332;87333;87334;87335;87336;87337;87338;87339;87340;87341;87342 87322 27 GLAYVDELTPEQIR Unmodified 1602.8253 0.82533668 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.185 40.486 2 5.7003E-27 19694 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 244.24 243.54 2152300000 156560000 158090000 133910000 0 0 0 195940000 185120000 181350000 0 0 0 170660000 162630000 149360000 0 0 0 217150000 211250000 230280000 0 0 0 7626 63 7437 141655;141656;141657;141658;141659;141660;141661;141662;141663;141664;141665;141666 87343;87344;87345;87346;87347;87348;87349;87350;87351;87352;87353 87350 11 GLCAAGCLLQYAK Unmodified 1423.6952 0.69519091 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 38.68 37.062 2 6.5308E-05 18025 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.247 79.327 152020000 16300000 0 0 0 0 842420 0 0 16919000 0 0 0 14459000 15533000 14260000 0 0 0 28651000 21317000 23742000 0 0 0 7627 1230 7438 141667;141668;141669;141670;141671;141672;141673;141674;141675 87354;87355;87356;87357;87358;87359;87360;87361 87358 6 GLCADDEPEAWLR Unmodified 1530.6773 0.67729224 581 P0AA97 yaeQ Uncharacterized protein YaeQ yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 40.069 38.401 2 8.3223E-09 19019 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.88 153.05 175760000 11954000 8641600 9117000 260360 0 0 15250000 16085000 21429000 0 0 0 15496000 12981000 13522000 0 0 0 15940000 17019000 18070000 0 0 0 7628 581 7439 141676;141677;141678;141679;141680;141681;141682;141683;141684;141685;141686;141687;141688 87362;87363;87364;87365;87366;87367;87368;87369;87370;87371 87363 10 GLCGGLNINLFK Unmodified 1304.6911 0.69109181 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.703 45.097 2 2.9807E-08 18032 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 164.72 161.14 1125700000 24230000 26537000 20961000 7525000 7668300 8978500 92919000 78507000 78138000 41229000 37720000 34998000 92871000 77202000 78511000 0 0 0 103220000 121850000 101790000 25686000 40141000 25065000 7629 644 7440 141689;141690;141691;141692;141693;141694;141695;141696;141697;141698;141699;141700;141701;141702;141703;141704;141705;141706;141707;141708;141709 87372;87373;87374;87375;87376;87377;87378;87379;87380;87381;87382;87383;87384;87385;87386;87387;87388;87389;87390;87391 87374 20 GLCGGLNINLFKK Unmodified 1432.7861 0.78605483 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 37.491 35.495 2;3 7.8582E-06 14425 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 89.403 86.537 101950000 0 0 0 6326700 6221500 5666900 0 0 0 14410000 13528000 15080000 0 0 0 4296800 0 0 0 0 0 13683000 11529000 11204000 7630 644 7441 141710;141711;141712;141713;141714;141715;141716;141717;141718;141719;141720;141721;141722;141723;141724;141725;141726;141727;141728;141729;141730 87392;87393;87394;87395;87396;87397;87398;87399;87400;87401;87402;87403;87404;87405;87406;87407;87408 87395 17 GLCMPTDLPR Unmodified 1158.5525 0.55254942 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.467 32.027 2 4.0933E-05 14580 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.09 130.18 981450000 215830000 170420000 160920000 0 0 0 64605000 64601000 61009000 0 0 0 39576000 31615000 33300000 0 0 0 48987000 43273000 47316000 0 0 0 7631 218 7442 141731;141732;141733;141734;141735;141736;141737;141738;141739;141740;141741;141742 87409;87410;87411;87412;87413 87412 5 GLCTLPGLEK Unmodified 1086.5743 0.57433072 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.691 29.334 2 0.0038208 13810 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 70.816 39.587 190430000 18056000 15174000 18570000 0 0 0 17897000 15156000 17462000 0 0 0 14462000 13788000 11070000 0 0 0 17120000 15748000 15929000 0 0 0 7632 1262 7443 141743;141744;141745;141746;141747;141748;141749;141750;141751;141752;141753;141754 87414 87414 1 GLDAILVPGGFGYR Unmodified 1433.7667 0.76669959 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 1 1 1 51.632 50.445 2;3 2.534E-06 23605 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 152.28 144.63 5597800000 302740000 275780000 283010000 4443800 3800800 3621100 484250000 468640000 416190000 8027400 6407300 6398200 517200000 512270000 504490000 4266200 3301300 3159100 618800000 581490000 574370000 5074800 4748200 5325500 7633 337 7444 141755;141756;141757;141758;141759;141760;141761;141762;141763;141764;141765;141766;141767;141768;141769;141770;141771;141772;141773;141774;141775;141776;141777;141778;141779;141780;141781;141782;141783;141784;141785;141786;141787;141788;141789;141790;141791 87415;87416;87417;87418;87419;87420;87421;87422;87423;87424;87425;87426;87427;87428;87429;87430;87431;87432;87433;87434;87435;87436;87437;87438;87439;87440;87441;87442;87443;87444;87445;87446;87447 87444 33 GLDASIEHDIVHGLQALPSR Unmodified 2127.1073 0.10726562 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 4 1 1 1 4 4 4 1 1 4 4 4 4 4 4 1 45.06 43.574 2;3;4;5 1.0246E-45 21193 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 300.07 286.94 6823100000 592900000 509610000 522780000 724760 912090 1101400 656190000 634300000 568940000 1430500 0 1421700 522100000 448220000 500250000 0 0 0 610720000 654870000 595380000 0 1287400 0 7634 1137 7445 141792;141793;141794;141795;141796;141797;141798;141799;141800;141801;141802;141803;141804;141805;141806;141807;141808;141809;141810;141811;141812;141813;141814;141815;141816;141817;141818;141819;141820;141821;141822;141823;141824;141825;141826;141827;141828;141829;141830;141831;141832;141833;141834;141835;141836;141837;141838;141839;141840;141841;141842;141843;141844;141845 87448;87449;87450;87451;87452;87453;87454;87455;87456;87457;87458;87459;87460;87461;87462;87463;87464;87465;87466;87467;87468;87469;87470;87471;87472;87473;87474;87475;87476;87477;87478;87479;87480;87481;87482;87483;87484;87485;87486;87487;87488;87489;87490;87491;87492 87475 45 GLDDLAKPSEK Unmodified 1171.6085 0.60846762 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 16.595 17.371 2 3.3712E-07 6389 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.34 158.41 70384000 0 0 0 0 0 0 16383000 18336000 14769000 0 0 0 3702800 3186000 2565600 0 0 0 3196800 3880400 4365500 0 0 0 7635 147 7446 141846;141847;141848;141849;141850;141851;141852;141853;141854 87493;87494;87495 87493 3 GLDELGWDAAGQLIDGEGR Unmodified 1970.9334 0.93338358 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 54.119 52.686 2 2.4507E-22 25653 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 236.28 216.65 268100000 20962000 21518000 21781000 0 4581900 0 24241000 24798000 19631000 0 0 0 23235000 17565000 16852000 0 0 0 22527000 24242000 26164000 0 0 0 7636 880 7447 141855;141856;141857;141858;141859;141860;141861;141862;141863;141864;141865;141866;141867 87496;87497;87498;87499 87497 4 GLDITITTTAK Unmodified 1132.634 0.63395408 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 2 2 3 2 2 2 3 2 1 1 3 2 1 2 2 2 31.419 29.937 1;2 1.61E-07 11098 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 168.8 166.12 931220000 105330000 97146000 89862000 26833000 22241000 20727000 31311000 29251000 31184000 7400100 32852000 29334000 39128000 42718000 36794000 31120000 2060900 1992200 74712000 68292000 5497600 39216000 31390000 34831000 7637 1644 7448 141868;141869;141870;141871;141872;141873;141874;141875;141876;141877;141878;141879;141880;141881;141882;141883;141884;141885;141886;141887;141888;141889;141890;141891;141892;141893;141894;141895;141896;141897;141898;141899;141900;141901;141902;141903;141904;141905;141906;141907;141908;141909;141910;141911;141912;141913;141914;141915;141916 87500;87501;87502;87503;87504;87505;87506;87507;87508;87509;87510;87511;87512;87513;87514;87515;87516;87517;87518;87519;87520 87505 10 GLDLSPTK Unmodified 829.45453 0.45453316 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.46 19.806 2 0.00065993 7729 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.57 79.255 1007200000 216440000 200860000 198910000 1429500 1214700 1219200 2604100 2239300 0 0 0 942840 24256000 25378000 21412000 1144100 1217500 1275300 96326000 91630000 106750000 4022200 3222700 4719500 7638 65 7449 141917;141918;141919;141920;141921;141922;141923;141924;141925;141926;141927;141928;141929;141930;141931;141932;141933;141934;141935;141936;141937 87521;87522;87523;87524;87525;87526;87527;87528;87529;87530;87531 87523 10 GLDVKDLEHPIEVPVGK Unmodified 1844.0044 0.0043636815 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.854 34.305 3;4 8.1688E-09 13514 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 115.31 105.78 544360000 0 0 0 30465000 26459000 26867000 0 0 0 70071000 68607000 49991000 0 0 0 28766000 23082000 27356000 0 0 0 55205000 67306000 70183000 7639 646 7450 141938;141939;141940;141941;141942;141943;141944;141945;141946;141947;141948;141949;141950;141951;141952;141953;141954;141955;141956;141957;141958;141959;141960;141961 87532;87533;87534;87535;87536;87537;87538;87539;87540;87541;87542;87543;87544;87545;87546;87547;87548;87549;87550;87551;87552;87553;87554 87540 23 GLDYYNR Unmodified 899.41373 0.41373097 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 17.397 18.044 2 0.0013448 6623 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.65 125.2 621970000 52077000 51596000 44022000 0 0 0 54828000 53716000 52745000 0 0 0 46334000 46774000 40327000 0 0 0 58154000 62885000 58209000 0 300970 0 7640 1634 7451 141962;141963;141964;141965;141966;141967;141968;141969;141970;141971;141972;141973;141974 87555;87556;87557;87558;87559;87560;87561;87562;87563;87564;87565;87566 87558 11 GLEALLRPK Unmodified 995.61277 0.61276513 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 28.288 26.962 2 0.00053697 12233 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.9 94.944 34904000 8893800 8263100 7153200 0 0 0 2448600 3125300 2873700 0 0 0 0 0 0 0 0 0 2146700 0 0 0 0 0 7641 1878 7452 141975;141976;141977;141978;141979;141980;141981 87567;87568;87569 87568 3 GLEDFYYSVGK Unmodified 1276.5976 0.59756858 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.74 39.863 2 0.0023893 18724 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.349 66.129 219750000 20706000 16178000 14887000 1462900 1329900 1337500 11136000 11198000 11239000 856770 3119900 4850200 13912000 13739000 13690000 0 0 0 19811000 23521000 23466000 4216700 5265500 3825000 7642 486 7453 141982;141983;141984;141985;141986;141987;141988;141989;141990;141991;141992;141993;141994;141995;141996;141997;141998;141999;142000;142001;142002 87570;87571;87572;87573;87574;87575;87576;87577;87578;87579;87580 87579 5 GLEEDAEGLR Unmodified 1087.5146 0.51456723 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.494 22.774 2 0.00049843 9464 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 99.139 91.918 4350700000 500700000 512570000 494610000 0 0 1178900 348450000 344420000 275540000 0 0 0 296030000 318610000 333110000 0 0 0 289920000 312860000 322670000 0 0 0 7643 31 7454 142003;142004;142005;142006;142007;142008;142009;142010;142011;142012;142013;142014;142015 87581;87582;87583;87584;87585;87586;87587;87588;87589 87588 7 GLEFSPDLK Unmodified 1004.5179 0.51786169 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 2 1 1 2 1 1 1 1 33.251 31.795 2 0.0002568 15536 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.62 96.169 1078300000 259500000 276950000 234320000 0 0 0 71923000 81404000 67234000 0 0 0 12254000 13511000 10121000 0 0 0 18018000 15723000 17321000 0 0 0 7644 1007 7455 142016;142017;142018;142019;142020;142021;142022;142023;142024;142025;142026;142027;142028;142029 87590;87591;87592;87593 87590 4 GLEGINSPVAK Unmodified 1083.5924 0.59242362 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.526 21.876 2 2.664E-06 8714 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 155.07 116.83 4407900000 278880000 238870000 206290000 0 0 0 498660000 392330000 386280000 1662700 1547700 2297700 388650000 364750000 355260000 0 0 0 418350000 440950000 433060000 0 0 0 7645 1189 7456 142030;142031;142032;142033;142034;142035;142036;142037;142038;142039;142040;142041;142042;142043;142044 87594;87595;87596;87597;87598;87599;87600;87601;87602;87603;87604;87605 87605 12 GLEIILQGR Unmodified 997.59203 0.59202969 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 38.062 35.918 2 7.8093E-05 17836 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 141.78 107.99 132970000 0 0 0 0 0 0 39387000 46967000 32223000 3644700 2532300 2841100 3603000 0 1769900 0 0 0 0 0 0 0 0 0 7646 722 7457 142045;142046;142047;142048;142049;142050;142051;142052 87606;87607;87608;87609;87610;87611 87609 6 GLENLSGDLYEK Unmodified 1336.6511 0.65106071 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.037 31.534 2 1.4847E-11 14977 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 180.36 139.33 2444500000 287500000 273820000 259260000 0 647060 0 223710000 198310000 203090000 0 0 858440 163190000 151780000 152380000 0 0 0 167330000 174630000 188020000 0 0 0 7647 94 7458 142053;142054;142055;142056;142057;142058;142059;142060;142061;142062;142063;142064;142065;142066 87612;87613;87614;87615;87616;87617;87618;87619;87620;87621 87614 10 GLESALSQPLTR Unmodified 1270.6881 0.68811492 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.056 31.591 2 4.0454E-23 10700 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 227.88 212.25 259010000 0 0 0 0 0 0 7407500 7066800 7903100 12441000 11718000 10965000 1193400 3204100 2247100 26452000 24829000 30278000 0 0 0 38664000 36560000 38077000 7648 1448 7459 142067;142068;142069;142070;142071;142072;142073;142074;142075;142076;142077;142078;142079;142080;142081 87622;87623;87624;87625;87626;87627 87623 6 GLETGADDYITK Unmodified 1281.6089 0.60886155 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 24.916 23.923 2 0.00073512 10703 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.017 64.346 53303000 0 0 0 0 0 0 0 6633400 6846100 0 0 0 6210900 6010300 4365300 0 0 0 6679900 8034200 8522800 0 0 0 7649 946 7460 142082;142083;142084;142085;142086;142087;142088;142089 87628 87628 1 GLETGADDYITKPFSPK Unmodified 1837.9098 0.90979459 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 3 2 2 2 1 1 1 1 2 1 2 2 2 33.15 31.451 2;3 8.7383E-41 15312 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 319.37 309.53 1243500000 0 0 0 1783300 1062700 1850200 241370000 211600000 211980000 8003600 7173200 8111600 0 0 0 13359000 10454000 11071000 73963000 327690000 84514000 10072000 9724900 9735200 7650 946 7461 142090;142091;142092;142093;142094;142095;142096;142097;142098;142099;142100;142101;142102;142103;142104;142105;142106;142107;142108;142109;142110;142111;142112;142113;142114;142115;142116;142117;142118;142119 87629;87630;87631;87632;87633;87634;87635;87636;87637;87638;87639;87640;87641;87642;87643;87644;87645;87646;87647 87635 19 GLETPLR Unmodified 784.4443 0.44430282 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.688 17.909 2 0.076214 5305 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 58.246 17.56 71836000 0 0 0 10651000 8607900 7188300 0 0 0 7179900 4628400 4359700 0 0 0 5553800 6890600 8314600 0 0 0 3423300 2897100 2141300 7651 279 7462 142120;142121;142122;142123;142124;142125;142126;142127;142128;142129;142130;142131 87648;87649 87648 2 GLETPLRPPVHEMDNETR Unmodified 2090.0215 0.021487084 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 1 2 2 2 1 3 2 3 1 1 2 3 2 1 2 1 24.028 23.132 2;3;4 1.5121E-14 10177 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 125.18 123.5 883850000 136890000 120460000 111040000 3154000 3332700 3586200 0 25186000 49715000 3872800 4039200 1632500 47698000 51408000 64596000 1991200 0 1211000 76287000 87375000 82079000 2621100 4155800 1520800 7652 279 7463 142132;142133;142134;142135;142136;142137;142138;142139;142140;142141;142142;142143;142144;142145;142146;142147;142148;142149;142150;142151;142152;142153;142154;142155;142156;142157;142158;142159;142160;142161;142162;142163;142164;142165;142166;142167;142168;142169;142170;142171;142172;142173;142174;142175 87650;87651;87652;87653;87654;87655;87656;87657;87658;87659;87660;87661;87662;87663;87664;87665;87666;87667;87668;87669;87670;87671;87672 87653 23 GLETPLRPPVHEMDNETRK Unmodified 2218.1165 0.1164501 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 19.602 19.999 3;4 5.0707E-05 7653 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 81.723 72.931 150640000 18700000 28667000 27935000 2879700 2664800 2970800 0 0 0 3373500 0 2060400 8202300 5991500 6913300 0 0 0 0 10001000 15018000 7812400 2505200 4947200 7653 279 7464 142176;142177;142178;142179;142180;142181;142182;142183;142184;142185;142186;142187;142188;142189;142190;142191;142192;142193 87673;87674;87675;87676;87677;87678;87679 87677 7 GLEVGATGFDPK Unmodified 1189.5979 0.59790293 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.11 28.667 2 2.6587E-05 12837 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.7 115.02 1511500000 330040000 316400000 284220000 1435700 1556600 1373600 6560400 6013200 5212900 0 1028800 1116500 36620000 37865000 32990000 0 0 1665200 148650000 154320000 129810000 4995800 4000900 5623500 7654 65 7465 142194;142195;142196;142197;142198;142199;142200;142201;142202;142203;142204;142205;142206;142207;142208;142209;142210;142211;142212;142213;142214 87680;87681;87682;87683;87684;87685;87686;87687;87688;87689 87687 10 GLFAVGECSSVGLHGANR Unmodified 1829.8843 0.88426532 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 30.684 28.986 2;3 1.5414E-45 13977 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 267.07 252.25 962030000 0 0 0 0 3932100 4397500 210710000 17889000 194680000 61730000 71931000 63303000 120110000 13551000 111940000 0 5780200 0 0 0 43982000 12021000 13434000 12630000 7655 25 7466 142215;142216;142217;142218;142219;142220;142221;142222;142223;142224;142225;142226;142227;142228;142229;142230;142231;142232;142233;142234;142235;142236;142237;142238;142239;142240;142241;142242 87690;87691;87692;87693;87694;87695;87696;87697;87698;87699;87700;87701;87702;87703;87704;87705;87706;87707;87708;87709;87710 87696 19 GLFNFVK Unmodified 823.45922 0.4592246 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 39.084 37.612 1;2 0.001232 13150 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 149.11 149.11 5885700000 929170000 847200000 969710000 267670000 269060000 298670000 421870000 350330000 358770000 137390000 174700000 150270000 73889000 71936000 62242000 30758000 18847000 22311000 123950000 117380000 124250000 21426000 22210000 21703000 7656 783 7467 142243;142244;142245;142246;142247;142248;142249;142250;142251;142252;142253;142254;142255;142256;142257;142258;142259;142260;142261;142262;142263;142264;142265;142266;142267;142268;142269;142270;142271;142272;142273;142274;142275;142276;142277;142278;142279;142280 87711;87712;87713;87714;87715;87716;87717;87718;87719;87720;87721;87722;87723;87724;87725;87726;87727;87728;87729;87730;87731;87732;87733;87734;87735;87736;87737;87738;87739;87740;87741;87742;87743;87744;87745 87733 29 GLGAGANPEVGR Unmodified 1096.5625 0.56252048 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.667 16.215 2 4.3315E-06 5569 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.25 126.03 3047400000 224850000 208270000 189710000 28370000 26617000 26776000 216620000 239590000 215600000 128830000 92519000 101800000 178910000 151840000 165440000 11774000 10577000 9846800 237950000 244740000 248360000 26265000 32790000 29396000 7657 502 7468 142281;142282;142283;142284;142285;142286;142287;142288;142289;142290;142291;142292;142293;142294;142295;142296;142297;142298;142299;142300;142301;142302;142303;142304 87746;87747;87748;87749;87750;87751;87752;87753;87754;87755;87756;87757;87758;87759;87760;87761;87762 87757 17 GLGAMIAIELFEDGDHNKPDAK Unmodified 2340.142 0.14199615 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 1 48.319 46.939 3;4 3.7192E-16 22784 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.93 153.09 538420000 102010000 111020000 94362000 0 0 2203900 59251000 45057000 44647000 0 0 0 5353400 6486700 6143000 0 0 0 20120000 15698000 23242000 0 2825200 0 7658 1194 7469 142305;142306;142307;142308;142309;142310;142311;142312;142313;142314;142315;142316;142317;142318;142319;142320;142321;142322;142323;142324;142325;142326;142327 87763;87764;87765;87766;87767;87768;87769;87770;87771;87772;87773;87774;87775;87776 87771 14 GLGDVLISFESEVNNIR Unmodified 1860.9581 0.95814177 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.553 54.08 3 2.9008E-19 25699 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 192.65 184.74 972830000 79580000 83127000 66301000 0 0 0 89805000 71772000 78362000 0 0 0 84645000 73770000 64983000 0 0 0 104550000 99490000 76448000 0 0 0 7659 1132 7470 142328;142329;142330;142331;142332;142333;142334;142335;142336;142337;142338;142339 87777;87778;87779;87780;87781;87782;87783;87784;87785;87786;87787;87788 87787 12 GLGEMNPEQLWETTMDPESR Unmodified 2319.0147 0.014746726 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.305 52.857 2 2.4775E-81 25933 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 318.74 304.31 383160000 28796000 25206000 26054000 0 0 0 23061000 24247000 19064000 0 0 0 37515000 32085000 35738000 0 0 0 42471000 46356000 42568000 0 0 0 7660 883 7471 142340;142341;142342;142343;142344;142345;142346;142347;142348;142349;142350;142351 87789;87790;87791;87792;87793;87794;87795 87789 7 GLGEMNPMQLR Unmodified 1244.6006 0.60056224 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 2 1 2 2 2 29.463 28.703 2;3 0.002288 15458 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 72.23 60.74 119870000 7613200 7680700 6439300 291130 0 0 8390600 8273200 7768600 0 0 0 9681400 10196000 8791800 0 0 0 14794000 14541000 15409000 0 0 0 7661 1164 7472 142352;142353;142354;142355;142356;142357;142358;142359;142360;142361;142362;142363;142364;142365;142366;142367;142368 87796;87797;87798;87799;87800;87801 87800 5 GLGGGYYLWNDATDK Unmodified 1628.7471 0.74708636 479 P0A908 mipA MltA-interacting protein yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 42.478 40.279 2 0.00013676 16133 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 83.182 66.55 17182000 0 0 0 1019900 0 1254500 0 0 0 3027500 3011400 3089600 0 0 0 0 0 0 0 0 0 3126100 2652600 0 7662 479 7473 142369;142370;142371;142372;142373;142374;142375 87802 87802 1 GLGHLALGLAK Unmodified 1048.6393 0.63931423 1134 P17109 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 26.862 25.714 2;3 0.00014218 12070 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.108 84.767 233150000 15901000 13009000 12776000 0 0 0 25544000 24905000 19929000 0 0 0 18411000 18005000 18285000 0 0 0 24472000 21481000 20434000 0 0 0 7663 1134 7474 142376;142377;142378;142379;142380;142381;142382;142383;142384;142385;142386;142387;142388;142389;142390;142391;142392;142393;142394;142395;142396;142397;142398;142399 87803;87804;87805;87806;87807;87808;87809 87805 3 GLGHTGGTLDK Unmodified 1054.5407 0.5407224 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 2 2 1 1 11.005 11.877 2 2.5427E-08 3033 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 178.55 135.68 624710000 0 0 0 0 0 0 72389000 78508000 86873000 0 0 0 70872000 70901000 70664000 0 0 0 83748000 19259000 71499000 0 0 0 7664 167 7475 142400;142401;142402;142403;142404;142405;142406;142407;142408;142409;142410;142411 87810;87811;87812;87813 87810 4 GLGHTGGTLDKLESIPGFDIFPDDNR Unmodified 2770.3562 0.35622268 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 49.316 47.954 3;4 1.027E-30 23644 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 187.79 184.8 1317000000 54906000 61691000 49282000 0 0 1200600 226120000 197710000 207290000 0 0 0 87426000 74146000 77970000 0 0 0 94741000 110300000 74201000 0 0 0 7665 167 7476 142412;142413;142414;142415;142416;142417;142418;142419;142420;142421;142422;142423;142424;142425;142426;142427;142428;142429;142430;142431;142432;142433;142434;142435;142436 87814;87815;87816;87817;87818;87819;87820;87821;87822;87823;87824;87825;87826 87816 13 GLGIGGTK Unmodified 701.40719 0.40718903 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 13.992 14.903 2 0.0035438 4785 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.55 74.886 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7666 1272 7477 142437;142438;142439;142440;142441;142442;142443 87827;87828;87829;87830;87831;87832;87833 87828 7 GLGLLIGCVLNADYAGQAK Unmodified 1932.0139 0.01388251 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 54.276 52.87 2 9.7841E-14 25896 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 165.7 164.71 396400000 145420000 122570000 128410000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7667 1919 7478 142444;142445;142446 87834;87835 87835 2 GLGTPVGSLLVGNR Unmodified 1338.7619 0.76194857 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 39.874 38.168 2 2.1791E-08 18578 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 182.71 175.06 996390000 73612000 53082000 52725000 0 0 0 144550000 105260000 116250000 0 0 0 66927000 56165000 53393000 0 0 0 91786000 91280000 89974000 0 1382000 0 7668 1778 7479 142447;142448;142449;142450;142451;142452;142453;142454;142455;142456;142457;142458;142459 87836;87837;87838;87839;87840;87841;87842;87843;87844 87839 9 GLGVIESSGVHLTPDYQR Unmodified 1926.9799 0.97993984 1239 P24192 hypD Hydrogenase isoenzymes formation protein HypD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.474 32.776 3 0.0041442 12677 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 51.265 47.297 182140000 4815600 0 5060300 0 0 0 11857000 20504000 20874000 4697700 3978100 2673500 19060000 18710000 18773000 0 0 0 14234000 19305000 15700000 1895300 0 0 7669 1239 7480 142460;142461;142462;142463;142464;142465;142466;142467;142468;142469;142470;142471;142472;142473;142474 87845 87845 1 GLGVSGEAEGHALLLGNQALLNEQQVGTK Unmodified 2902.5148 0.51484859 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 42.518 40.295 3 7.6997E-08 16124 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 100.7 100.45 33767000 0 0 0 0 1653200 3135500 8214600 4885900 0 5597900 5341500 4938400 0 0 0 0 0 0 0 0 0 0 0 0 7670 1980 7481 142475;142476;142477;142478;142479;142480;142481 87846;87847;87848 87847 3 GLGVWDAVQAMR Unmodified 1301.655 0.65504065 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.41 46.013 2 1.6872E-05 18428 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 124.92 123.3 264190000 22993000 18268000 16504000 4739900 4490000 4607900 23720000 23505000 21506000 8746300 9025700 7652500 16256000 13109000 12232000 2048600 1270300 0 12342000 18665000 15666000 1933400 2559000 2344300 7671 1765 7482 142482;142483;142484;142485;142486;142487;142488;142489;142490;142491;142492;142493;142494;142495;142496;142497;142498;142499;142500;142501;142502;142503;142504 87849;87850;87851;87852;87853;87854 87850 6 GLHEAGWMVEMPK Unmodified 1483.6952 0.69519091 1905 P77434 alaC Glutamate-pyruvate aminotransferase AlaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.142 31.675 3 0.00026496 14872 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 61.11 55.608 106120000 16242000 14272000 16128000 0 482600 353170 10337000 7415900 10449000 0 0 0 4473200 5077100 3107600 0 0 0 4865800 7036600 5877600 0 0 0 7672 1905 7483 142505;142506;142507;142508;142509;142510;142511;142512;142513;142514;142515;142516;142517;142518 87855;87856;87857 87857 3 GLHLPEK Unmodified 792.44939 0.4493882 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.395 14.281 2 0.027688 4386 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 69.383 53.276 1696200000 400290000 369030000 346560000 0 1581100 0 131120000 126340000 118740000 0 0 0 36926000 33844000 33466000 0 0 0 52019000 0 46268000 0 0 0 7673 195 7484 142519;142520;142521;142522;142523;142524;142525;142526;142527;142528;142529;142530 87858;87859 87858 2 GLHSAFTVR Unmodified 986.52976 0.52976379 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.621 16.193 2 5.0603E-08 4491 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 161.9 123.08 881080000 270030000 307670000 215830000 0 0 0 0 74746000 0 0 0 12801000 0 0 0 0 0 0 0 0 0 0 0 0 7674 352 7485 142531;142532;142533;142534;142535;142536;142537;142538;142539;142540;142541;142542;142543;142544;142545;142546;142547;142548;142549 87860;87861;87862;87863;87864;87865;87866;87867;87868;87869;87870;87871;87872;87873;87874;87875;87876;87877;87878 87868 19 GLIAEHQGELWVASPLK Unmodified 1846.9941 0.99413335 525 P0A9I8 nirD Nitrite reductase (NADH) small subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 39.704 38.021 2;3 2.262E-09 18517 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 153.39 139.13 331540000 16772000 16800000 14397000 0 0 0 30091000 20963000 26463000 0 0 0 33571000 33713000 30590000 0 0 0 34353000 37886000 34413000 0 0 1533300 7675 525 7486 142550;142551;142552;142553;142554;142555;142556;142557;142558;142559;142560;142561;142562;142563;142564;142565;142566;142567;142568;142569;142570;142571;142572;142573;142574 87879;87880;87881;87882;87883;87884;87885;87886;87887;87888;87889 87883 11 GLIDAVAFGR Unmodified 1017.5607 0.56072956 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 42.662 40.91 2 7.6692E-09 19989 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 187.55 154.19 996130000 0 0 0 0 0 0 113850000 106560000 104880000 0 0 0 112380000 101270000 103540000 0 0 0 121570000 112210000 119880000 0 0 0 7676 1890 7487 142575;142576;142577;142578;142579;142580;142581;142582;142583 87890;87891;87892;87893;87894;87895;87896;87897;87898 87893 9 GLIDPGESVYEAANR Unmodified 1589.7686 0.76855009 1581 P45799 nudE ADP compounds hydrolase NudE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.395 34.838 2 5.0499E-27 16717 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 234.39 231.98 307510000 38751000 32612000 34625000 0 0 0 19244000 21541000 20376000 0 0 0 15882000 17864000 18375000 0 0 0 29501000 30041000 28697000 0 0 0 7677 1581 7488 142584;142585;142586;142587;142588;142589;142590;142591;142592;142593;142594;142595 87899;87900;87901;87902;87903;87904;87905;87906;87907 87903 9 GLIDSSDLPLNVSR Unmodified 1484.7835 0.78347187 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 43.903 42.267 2;3 5.7845E-08 20526 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 177.44 177.44 2056900000 209160000 186580000 165230000 5514700 6104500 5825200 2320800 5454600 3983500 4610000 5356000 5115100 179820000 136500000 173070000 0 0 6367100 332850000 330080000 280030000 4694300 4056800 4148100 7678 295 7489 142596;142597;142598;142599;142600;142601;142602;142603;142604;142605;142606;142607;142608;142609;142610;142611;142612;142613;142614;142615;142616;142617;142618;142619 87908;87909;87910;87911;87912;87913;87914;87915;87916;87917;87918;87919;87920 87917 11 GLIEATLDAVR Unmodified 1156.6452 0.64518747 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.021 42.267 2 0.0010786 16953 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 82.749 62.229 113910000 0 7230500 0 1137100 1174800 895830 22779000 15837000 16563000 0 3422000 5221300 8306000 5715300 4851700 0 0 0 0 0 13754000 2436700 2518500 2072200 7679 1365 7490 142620;142621;142622;142623;142624;142625;142626;142627;142628;142629;142630;142631;142632;142633;142634;142635 87921;87922;87923;87924;87925 87921 4 GLIEEMASAYEDPK Unmodified 1551.7127 0.71267469 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 46.024 44.534 2;3 1.9125E-06 21573 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.91 147.91 4802200000 404810000 395850000 351430000 0 0 0 315030000 285490000 284130000 0 0 0 423160000 444700000 414170000 0 0 0 465600000 515980000 501880000 0 0 0 7680 396 7491 142636;142637;142638;142639;142640;142641;142642;142643;142644;142645;142646;142647;142648;142649;142650;142651;142652;142653;142654;142655;142656;142657;142658;142659 87926;87927;87928;87929;87930;87931;87932;87933;87934;87935;87936;87937;87938;87939;87940;87941;87942;87943;87944;87945;87946;87947;87948;87949 87942 24 GLIEEMASAYEDPKEVIEFYSK Unmodified 2547.2091 0.20907266 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 3 2 2 2 1 2 2 2 2 1 1 1 3 2 2 2 1 1 54.577 53.242 2;3 2.5923E-34 25229 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 263.04 261.79 7760400000 749670000 742430000 689350000 8372900 13282000 12238000 385270000 343640000 299900000 21438000 13368000 30861000 647510000 586960000 588180000 24687000 20699000 24068000 878870000 800370000 817720000 23636000 19826000 18044000 7681 396 7492 142660;142661;142662;142663;142664;142665;142666;142667;142668;142669;142670;142671;142672;142673;142674;142675;142676;142677;142678;142679;142680;142681;142682;142683;142684;142685;142686;142687;142688;142689;142690;142691;142692;142693;142694;142695;142696;142697;142698;142699;142700;142701 87950;87951;87952;87953;87954;87955;87956;87957;87958;87959;87960;87961;87962;87963;87964;87965;87966;87967;87968;87969;87970;87971;87972;87973;87974;87975;87976;87977;87978;87979;87980;87981 87977 32 GLIEESVNR Unmodified 1015.5298 0.52982336 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 20.214 20.352 2 8.7679E-05 5996 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 139.31 118.69 90995000 4816700 6504300 0 8475300 8513400 7481700 0 0 0 5386500 4409200 4181200 0 0 0 0 0 0 12709000 11116000 0 7115400 5701200 4585200 7682 152 7493 142702;142703;142704;142705;142706;142707;142708;142709;142710;142711;142712;142713;142714 87982;87983;87984 87982 3 GLIFVGLDIIGDR Unmodified 1386.7871 0.78710068 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.078 53.605 2 3.7741E-09 26552 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 172.88 171.77 1031200000 92410000 94271000 96147000 0 0 0 87188000 91482000 76941000 0 0 0 83537000 71644000 66850000 0 0 0 89822000 93886000 87071000 0 0 0 7683 90 7494 142715;142716;142717;142718;142719;142720;142721;142722;142723;142724;142725;142726 87985;87986;87987;87988;87989;87990;87991;87992;87993;87994;87995;87996 87987 12 GLIGKEEDDVVVIK Unmodified 1512.8399 0.83992412 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 29.458 28.243 2;3 1.8001E-09 13056 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 180.24 160.64 3563000000 224520000 199520000 192080000 1540300 1342700 1923500 321270000 300350000 293870000 2170400 2518600 1851800 312120000 304250000 277010000 6854100 6166800 5981100 383560000 347220000 376860000 0 0 0 7684 288 7495 142727;142728;142729;142730;142731;142732;142733;142734;142735;142736;142737;142738;142739;142740;142741;142742;142743;142744;142745;142746;142747;142748;142749;142750;142751;142752;142753;142754;142755;142756;142757;142758;142759;142760 87997;87998;87999;88000;88001;88002;88003;88004;88005;88006;88007;88008;88009;88010;88011;88012;88013;88014;88015;88016;88017;88018;88019 88005 23 GLILLSCGPYYNVLR Unmodified 1736.9284 0.92836197 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.756 51.441 2 1.2925E-11 25101 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 170.47 170.47 853150000 193720000 214920000 180580000 2072600 0 1549300 54410000 49104000 46816000 2122700 0 1569800 11371000 10708000 11546000 0 0 0 23796000 25052000 23807000 0 0 0 7685 1194 7496 142761;142762;142763;142764;142765;142766;142767;142768;142769;142770;142771;142772;142773;142774;142775;142776 88020;88021;88022;88023;88024;88025;88026 88025 3 GLINDPHMDNSFQINDGLR Unmodified 2155.0117 0.011650679 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 39.356 37.565 2;3 2.9163E-45 18240 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 317.91 304.14 2037600000 338260000 334580000 323850000 7407400 9170100 6157100 95477000 98619000 93058000 5852500 7610300 11537000 109710000 102870000 93398000 0 0 0 121760000 119690000 131410000 8464300 9151500 9542600 7686 639 7497 142777;142778;142779;142780;142781;142782;142783;142784;142785;142786;142787;142788;142789;142790;142791;142792;142793;142794;142795;142796;142797;142798;142799;142800;142801;142802;142803;142804;142805;142806;142807;142808;142809 88027;88028;88029;88030;88031;88032;88033;88034;88035;88036;88037;88038;88039;88040 88039 14 GLINGVLR Unmodified 840.51814 0.51813647 1449 P36929 rsmB Ribosomal RNA small subunit methyltransferase B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 30.486 28.684 2 0.034842 11024 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 62.978 42.497 11349000 0 3181000 0 0 0 0 0 0 0 1445000 1767900 1218400 0 0 0 0 0 0 0 1962500 1774300 0 0 0 7687 1449 7498 142810;142811;142812;142813;142814;142815 88041 88041 1 GLINMLIFCGCVGQSGGGWAHYVGQEK Unmodified 2937.3724 0.37242357 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.027 51.75 3 8.0959E-23 20695 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 170.97 168.56 342780000 0 0 0 1750400 2118800 2832000 8818000 13864000 13235000 20208000 16083000 14978000 7233600 9162400 9405500 0 4047500 5976100 13783000 11320000 16179000 63111000 56234000 52441000 7688 205 7499 142816;142817;142818;142819;142820;142821;142822;142823;142824;142825;142826;142827;142828;142829;142830;142831;142832;142833;142834;142835 88042;88043;88044;88045;88046;88047;88048;88049;88050 88046 9 GLISDPDLNGSYR Unmodified 1405.6838 0.68375782 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 32.069 30.713 2 5.2623E-09 14544 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.93 164.99 123770000 29806000 21070000 22878000 0 0 0 0 6085300 0 0 1014300 0 5442800 4891300 5173600 0 0 0 8924600 8740700 9743000 0 0 0 7689 44 7500 142836;142837;142838;142839;142840;142841;142842;142843;142844;142845;142846 88051;88052 88051 2 GLISVEQEIK Unmodified 1114.6234 0.6233894 1871 P76550 yffS Uncharacterized protein YffS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 31.497 29.58 2 0.035504 11031 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 58.433 45.396 25810000 0 0 0 2935900 2371300 2692700 0 0 0 1829100 2441100 1748300 0 0 0 0 0 0 0 0 0 3875500 4172400 3743900 7690 1871 7501 142847;142848;142849;142850;142851;142852;142853;142854;142855 88053 88053 0 GLITEHVQHTGSQR Unmodified 1561.7961 0.79610224 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 1 3 3 3 3 3 3 11.91 12.737 2;3;4 7.5712E-45 3479 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 314.78 304.26 1746100000 319650000 342790000 251840000 0 747360 0 111820000 136600000 133590000 0 0 765580 66927000 50161000 67655000 0 0 0 89064000 83191000 91249000 0 0 0 7691 218 7502 142856;142857;142858;142859;142860;142861;142862;142863;142864;142865;142866;142867;142868;142869;142870;142871;142872;142873;142874;142875;142876;142877;142878;142879;142880;142881;142882;142883;142884;142885;142886;142887;142888;142889;142890;142891;142892;142893 88054;88055;88056;88057;88058;88059;88060;88061;88062;88063;88064;88065;88066;88067;88068;88069;88070;88071;88072;88073;88074;88075 88054 22 GLIVAPPK Unmodified 793.50617 0.5061748 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.308 22.569 2 0.01232 7153 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 75.311 68.186 1136900000 143810000 126470000 132460000 13565000 12584000 13737000 73595000 89355000 65236000 69793000 60345000 55480000 38258000 32029000 36030000 3161500 2490500 2333100 50103000 48996000 50980000 4332200 5780700 5970400 7692 982 7503 142894;142895;142896;142897;142898;142899;142900;142901;142902;142903;142904;142905;142906;142907;142908;142909;142910;142911;142912;142913;142914;142915;142916;142917 88076;88077;88078;88079;88080;88081;88082;88083;88084;88085;88086;88087;88088;88089;88090 88085 14 GLKDTSK Unmodified 747.41267 0.41266834 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 1 1 1 1 2 2 2 8.7185 9.0675 2 4.4823E-07 765 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 157.58 94.92 6781500000 0 0 0 0 1618400000 59397 0 0 0 143480000 120980000 101740000 0 0 0 70990000 37528000 36794000 23572000 0 26645000 1578700000 1500900000 1521700000 7693 939 7504 142918;142919;142920;142921;142922;142923;142924;142925;142926;142927;142928;142929;142930;142931;142932;142933;142934;142935;142936 88091;88092;88093;88094;88095;88096;88097;88098;88099;88100;88101;88102;88103;88104 88104 14 GLKENVIVGR Unmodified 1083.64 0.64004252 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 6 5 8 2 1 2 11 9 7 1 1 2 4 7 3 16.889 17.131 2;3 1.6545E-08 4181 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 197.3 151.58 24036000000 13827000 8336600 14770000 18581000 17425000 17339000 0 0 9724500 1833600000 1536700000 1749100000 9888200 5939100 9426100 5408600000 3382300000 3720700000 12444000 7090500 18844000 2107200000 2131600000 2002900000 7694 458 7505 142937;142938;142939;142940;142941;142942;142943;142944;142945;142946;142947;142948;142949;142950;142951;142952;142953;142954;142955;142956;142957;142958;142959;142960;142961;142962;142963;142964;142965;142966;142967;142968;142969;142970;142971;142972;142973;142974;142975;142976;142977;142978;142979;142980;142981;142982;142983;142984;142985;142986;142987;142988;142989;142990;142991;142992;142993;142994;142995;142996;142997;142998;142999;143000;143001;143002;143003;143004;143005;143006;143007;143008;143009;143010;143011;143012;143013;143014;143015;143016;143017 88105;88106;88107;88108;88109;88110;88111;88112;88113;88114;88115;88116;88117;88118;88119;88120;88121;88122;88123;88124;88125;88126;88127;88128;88129;88130;88131;88132;88133;88134;88135;88136;88137;88138;88139;88140;88141;88142;88143;88144;88145;88146;88147;88148;88149;88150;88151;88152;88153;88154;88155;88156;88157;88158 88114 45 GLLADIVLSAQDSDVIK Unmodified 1755.9618 0.96183016 1971 Q47083 cbl HTH-type transcriptional regulator cbl yes yes 0 0 0 By MS/MS By MS/MS By matching 2 2 1 26.247 24.408 3 0.15399 8830 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 15.884 12.28 91027000 0 0 0 0 0 0 0 0 0 38571000 33401000 19055000 0 0 0 0 0 0 0 0 0 0 0 0 7695 1971 7506 143018;143019;143020;143021;143022 88159;88160 88160 2 GLLAEGVLGEVAYFESHFDR Unmodified 2208.0851 0.085133198 1902 P77376 ydgJ Uncharacterized oxidoreductase YdgJ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 55.154 53.678 3 5.3889E-07 26426 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.165 97.377 233100000 33132000 32542000 28932000 0 0 0 9511200 13869000 15950000 0 0 892810 14684000 14253000 16403000 0 0 0 17148000 18421000 17357000 0 0 0 7696 1902 7507 143023;143024;143025;143026;143027;143028;143029;143030;143031;143032;143033;143034;143035 88161;88162;88163 88163 3 GLLAFSPEKPGTTEAQCNYYYAK Unmodified 2607.2315 0.23153944 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.85 34.294 3 5.2652E-07 16316 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 106.86 106 204930000 26367000 30216000 22591000 0 0 0 15413000 15459000 12128000 0 0 0 12057000 10093000 13524000 0 0 0 16042000 18655000 12386000 0 0 0 7697 1006 7508 143036;143037;143038;143039;143040;143041;143042;143043;143044;143045;143046;143047 88164;88165;88166;88167;88168 88166 5 GLLANQLYSQVK Unmodified 1332.7402 0.74015049 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 34.327 32.703 2 2.4137E-06 15414 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.33 146.54 108490000 36335000 38691000 30257000 457260 0 0 0 0 0 2746300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7698 121 7509 143048;143049;143050;143051;143052 88169;88170;88171 88171 2 GLLAPITDVVK Unmodified 1124.6805 0.68051035 331 P0A7C6 pepE Peptidase E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.08 41.564 2 0.00093497 20551 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 83.998 76.709 1034900000 40256000 38242000 36176000 0 0 0 154440000 125270000 144470000 0 0 0 96696000 96597000 85150000 0 0 0 66311000 83794000 67481000 0 0 0 7699 331 7510 143053;143054;143055;143056;143057;143058;143059;143060;143061;143062;143063;143064 88172;88173;88174;88175;88176;88177;88178;88179;88180;88181;88182;88183 88174 12 GLLDSVTR Unmodified 859.47633 0.47633123 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.755 28.281 2 9.3068E-05 13075 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 162.51 93.082 967370000 53795000 43761000 41938000 2232300 1853500 2391900 92272000 98179000 80627000 5753100 5531300 4739200 82932000 83976000 73639000 0 0 0 98921000 97740000 92971000 0 0 4116600 7700 1117 7511 143065;143066;143067;143068;143069;143070;143071;143072;143073;143074;143075;143076;143077;143078;143079;143080;143081;143082;143083 88184;88185;88186;88187;88188;88189;88190;88191;88192;88193;88194;88195 88189 12 GLLEEDAFIER Unmodified 1290.6456 0.6455814 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 40.945 39.338 2 0.00010878 15722 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 118.18 107.35 1860900000 116860000 121140000 106810000 24975000 27933000 26270000 130750000 128660000 124590000 41433000 46240000 41115000 112070000 102350000 109180000 9045000 10476000 12456000 166560000 172790000 157240000 24818000 23449000 23672000 7701 883 7512 143084;143085;143086;143087;143088;143089;143090;143091;143092;143093;143094;143095;143096;143097;143098;143099;143100;143101;143102;143103;143104;143105;143106;143107;143108;143109;143110;143111 88196;88197;88198;88199;88200;88201;88202;88203;88204;88205;88206;88207;88208;88209;88210;88211;88212;88213 88199 16 GLLIALPK Unmodified 823.55312 0.55312499 1524 P39321 tamB Translocation and assembly module TamB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.693 37.847 2 0.07053 18366 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 55.441 9.0706 26079000 0 2351200 0 0 752110 654560 1829400 0 1844900 0 1685200 1191200 1789100 1535500 0 0 0 0 3786300 3269200 3541600 0 843330 1005300 7702 1524 7513 143112;143113;143114;143115;143116;143117;143118;143119;143120;143121;143122;143123;143124;143125 88214;88215 88214 2 GLLIGMGMTEK Unmodified 1148.5934 0.5933516 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 39.09 36.937 2 0.01404 18408 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 61.593 53.668 115490000 0 0 0 0 0 0 46374000 37587000 31534000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7703 1413 7514 143126;143127;143128 88216;88217 88216 2 GLLIWGPDSGSQACGDIGPGR Unmodified 2112.0058 0.0058370195 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.828 46.413 2 1.2579E-10 21711 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 160.48 149.53 83731000 6028500 4200300 4301600 0 0 0 7217400 7150500 6265300 0 0 0 8377100 7487400 8756900 0 0 0 7789400 8827100 7329100 0 0 0 7704 670 7515 143129;143130;143131;143132;143133;143134;143135;143136;143137;143138;143139;143140 88218;88219;88220;88221;88222;88223;88224 88223 7 GLLKPEEIVTHYMPFEEAAR Unmodified 2329.1777 0.17765337 1896 P77316 ybdR Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 1 1 2 44.885 43.124 3;4 0.0011418 21000 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 48.354 40.457 83833000 21813000 20372000 18447000 0 0 0 7507400 7757100 3169200 1536500 0 3231300 0 0 0 0 0 0 0 0 0 0 0 0 7705 1896 7516 143141;143142;143143;143144;143145;143146;143147;143148;143149;143150;143151;143152;143153;143154 88225;88226;88227;88228 88226 1 GLLLDEWR Unmodified 1000.5342 0.53418046 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.85 41.237 2 2.3987E-06 20488 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 185.99 162.68 1159200000 22317000 20422000 18818000 0 0 0 109150000 89452000 92322000 0 0 0 106100000 100540000 90833000 0 0 0 177100000 173180000 158970000 0 0 0 7706 1065 7517 143155;143156;143157;143158;143159;143160;143161;143162;143163;143164;143165;143166 88229;88230;88231;88232;88233;88234;88235;88236;88237;88238;88239;88240 88230 12 GLLLDEWRDDWR Unmodified 1572.7685 0.76849051 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 46.827 45.406 3 2.837E-06 21956 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.07 129.75 107710000 2148200 0 0 0 0 0 4394700 3977000 3673400 0 0 0 10315000 8565400 8325200 0 0 0 25657000 18080000 22575000 0 0 0 7707 1065 7518 143167;143168;143169;143170;143171;143172;143173;143174;143175;143176 88241;88242;88243;88244;88245 88243 5 GLLNDGLAVVGGFK Unmodified 1358.7558 0.75580056 1953 Q46808 yqeB Uncharacterized protein YqeB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 50.746 49.433 2 4.3752E-08 19660 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 145.89 124.14 34298000 0 0 0 0 0 0 0 0 0 0 0 0 2477300 1965500 1125700 0 0 0 3032800 0 0 8467400 8950800 8278000 7708 1953 7519 143177;143178;143179;143180;143181;143182;143183 88246;88247;88248 88246 3 GLLPTALDITDNPR Unmodified 1494.8042 0.80420731 95 P04846 nlpA Lipoprotein 28 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.291 44.801 2 3.4135E-06 22309 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 141.1 132.51 242280000 27286000 20045000 19591000 5141700 5369500 4623100 18710000 19275000 20312000 7453700 5629100 5029000 6600900 5768300 7469000 1851500 1506400 0 16794000 20785000 14863000 3129400 2610700 2435700 7709 95 7520 143184;143185;143186;143187;143188;143189;143190;143191;143192;143193;143194;143195;143196;143197;143198;143199;143200;143201;143202;143203;143204;143205;143206 88249;88250;88251;88252;88253;88254;88255;88256;88257 88252 9 GLLQAVDDFTAEAQLDK Unmodified 1832.9156 0.91560825 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 53.604 52.23 2 1.0777E-13 20843 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 196.38 194.14 158070000 0 0 0 0 3384600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50719000 51011000 52952000 7710 1433 7521 143207;143208;143209;143210 88258;88259;88260 88260 3 GLLQAVDDFTAEAQLDKAER Unmodified 2189.0964 0.096426166 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 49.261 47.757 2;3 2.9418E-18 18886 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 165.74 165 224680000 0 0 0 0 0 0 0 0 0 0 3332500 3514200 0 0 0 0 0 0 0 0 0 82199000 70970000 64661000 7711 1433 7522 143211;143212;143213;143214;143215;143216;143217;143218 88261;88262;88263;88264;88265 88261 5 GLLTEAELDDIFSVQNLMHPAYK Unmodified 2603.2941 0.2941397 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 54.835 53.374 2;3 1.6024E-75 25427 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 391.61 379.08 5259200000 358710000 362180000 303000000 0 0 0 536990000 474250000 477460000 0 0 0 550910000 581560000 508530000 0 0 0 357420000 370540000 377660000 0 0 0 7712 697 7523 143219;143220;143221;143222;143223;143224;143225;143226;143227;143228;143229;143230;143231;143232;143233;143234;143235;143236;143237;143238;143239;143240;143241 88266;88267;88268;88269;88270;88271;88272;88273;88274;88275;88276;88277;88278;88279;88280;88281;88282;88283 88280 18 GLLTEAELDDIFSVQNLMHPAYK Oxidation (M) 2619.2891 0.28905432 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 1 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 53.436 52.211 3 4.7081E-05 25794 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 74.698 67.9 64217000 0 0 0 0 0 0 16609000 13484000 0 0 0 0 9302400 0 8538200 3380800 0 0 12902000 0 0 0 0 0 7713 697 7523 143242;143243;143244;143245;143246;143247 88284 88284 373 0 GLMAIPAPESEYVR Unmodified 1531.7705 0.77046434 1709 P67080 yggS UPF0001 protein YggS yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 40.746 38.924 2 8.8339E-06 19410 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 108.47 99.938 358710000 0 0 0 0 0 0 27222000 26295000 25734000 0 2082300 0 44163000 33440000 33578000 0 0 0 53532000 59713000 52954000 0 0 0 7714 1709 7524 143248;143249;143250;143251;143252;143253;143254;143255;143256;143257 88285 88285 1 GLMAKPDGSIIETPITANFR Oxidation (M) 2146.1092 0.10923946 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 5 5 4 6 3 5 4 5 6 40.487 38.935 2;3 9.2294E-30 13741 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 210.08 197.28 2402100000 0 0 0 324560 3170300 3530200 0 0 3158500 299450000 253870000 198820000 0 0 0 315060000 158950000 210520000 0 0 0 248690000 500150000 206380000 7715 458 7525 143258;143259;143260;143261;143262;143263;143264;143265;143266;143267;143268;143269;143270;143271;143272;143273;143274;143275;143276;143277;143278;143279;143280;143281;143282;143283;143284;143285;143286;143287;143288;143289;143290;143291;143292;143293;143294;143295;143296;143297;143298;143299;143300;143301;143302;143303;143304;143305 88286;88287;88288;88289;88290;88291;88292;88293;88294;88295;88296;88297;88298;88299;88300;88301;88302;88303;88304;88305;88306;88307;88308;88309;88310;88311;88312;88313;88314;88315;88316;88317;88318;88319;88320;88321;88322;88323;88324;88325;88326;88327;88328;88329;88330;88331;88332 88286 231 46 GLMAKPDGSIIETPITANFR Unmodified 2130.1143 0.11432484 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 2 2 2 2 2 2 4 5 4 3 2 3 6 7 6 2 3 3 6 5 5 43.086 41.666 2;3;4 1.1077E-29 19145 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 271.43 267.28 66477000000 64642000 505450000 430830000 35255000 35886000 31979000 341330000 331750000 35623000 4240300000 4113400000 4410500000 33970000 290660000 310050000 11787000000 11205000000 11700000000 467290000 476570000 480790000 5172700000 5326300000 4649600000 7716 458 7525 143306;143307;143308;143309;143310;143311;143312;143313;143314;143315;143316;143317;143318;143319;143320;143321;143322;143323;143324;143325;143326;143327;143328;143329;143330;143331;143332;143333;143334;143335;143336;143337;143338;143339;143340;143341;143342;143343;143344;143345;143346;143347;143348;143349;143350;143351;143352;143353;143354;143355;143356;143357;143358;143359;143360;143361;143362;143363;143364;143365;143366;143367;143368;143369;143370;143371;143372;143373;143374;143375;143376;143377;143378;143379;143380;143381;143382;143383;143384;143385;143386;143387;143388 88333;88334;88335;88336;88337;88338;88339;88340;88341;88342;88343;88344;88345;88346;88347;88348;88349;88350;88351;88352;88353;88354;88355;88356;88357;88358;88359;88360;88361;88362;88363;88364;88365;88366;88367;88368;88369;88370;88371;88372;88373;88374;88375;88376;88377;88378;88379;88380;88381;88382;88383;88384;88385;88386;88387;88388;88389;88390;88391;88392;88393;88394;88395;88396;88397;88398;88399;88400;88401;88402;88403;88404;88405;88406;88407;88408;88409;88410;88411;88412;88413;88414;88415 88415 82 GLMLNVTDPASIESVLEK Unmodified 1914.9972 0.99722939 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 54.352 52.906 2;3 6.1966E-23 26177 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 200.13 194.97 4537100000 299290000 287690000 242820000 0 0 3703100 263720000 234280000 207210000 0 1973600 0 503410000 501810000 492950000 0 0 0 501430000 488540000 505870000 2445600 0 0 7717 868 7526 143389;143390;143391;143392;143393;143394;143395;143396;143397;143398;143399;143400;143401;143402;143403;143404;143405;143406;143407;143408;143409;143410;143411;143412;143413;143414;143415 88416;88417;88418;88419;88420;88421;88422;88423;88424;88425;88426;88427;88428;88429;88430;88431;88432;88433;88434;88435;88436 88418 21 GLMNVQFAVK Unmodified 1105.5954 0.59540051 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.9 35.357 2 0.00042077 16982 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.25 112.26 823380000 186340000 179460000 160220000 0 0 0 0 0 0 1378400 0 0 20451000 19320000 21813000 2644500 0 0 76299000 71896000 79597000 0 3960700 0 7718 65 7527 143416;143417;143418;143419;143420;143421;143422;143423;143424;143425;143426;143427 88437;88438;88439;88440;88441 88440 4 GLMPNPK Unmodified 755.4 0.39999517 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 15.999 16.645 1;2 0.0086334 5777 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.627 80.473 2964500000 403500000 410770000 346300000 18915000 2428600 2426600 127660000 141710000 115010000 30580000 26398000 21051000 175170000 158510000 136980000 1913900 12210000 12806000 272630000 282710000 264770000 0 0 0 7719 353 7528 143428;143429;143430;143431;143432;143433;143434;143435;143436;143437;143438;143439;143440;143441;143442;143443;143444;143445;143446;143447;143448;143449;143450;143451;143452;143453;143454;143455;143456;143457;143458;143459;143460;143461;143462;143463;143464;143465 88442;88443;88444;88445;88446;88447;88448;88449;88450;88451;88452;88453;88454;88455;88456;88457;88458;88459;88460 88446 16 GLMTVGEMSSTSLEHCQR Oxidation (M) 2037.8918 0.89179482 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 3 1 2 3 2 24.272 23.377 3 1.3398E-09 9318 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 114.27 104.49 209720000 0 0 0 0 0 0 31362000 26874000 10272000 0 0 0 11282000 20666000 8866300 0 0 0 23016000 42271000 35116000 0 0 0 7720 1324 7529 143466;143467;143468;143469;143470;143471;143472;143473;143474;143475;143476;143477;143478;143479;143480;143481;143482 88461;88462;88463;88464;88465;88466;88467;88468;88469;88470;88471;88472;88473;88474;88475 88473 535 12 GLMTVGEMSSTSLEHCQR Unmodified 2021.8969 0.8968802 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 2 3 2 2 2 2 1 1 1 2 2 2 1 1 29.017 27.805 2;3 1.5317E-55 12209 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 339.13 313.01 6770000000 12612000 16532000 12441000 1097100 1113900 1986800 573400000 666480000 625810000 0 0 0 681830000 662090000 718030000 1399800 786170 1205100 984570000 928080000 872690000 0 4267700 3555900 7721 1324 7529 143483;143484;143485;143486;143487;143488;143489;143490;143491;143492;143493;143494;143495;143496;143497;143498;143499;143500;143501;143502;143503;143504;143505;143506;143507;143508;143509;143510;143511;143512 88476;88477;88478;88479;88480;88481;88482;88483;88484;88485;88486;88487;88488;88489;88490;88491 88491 16 GLNCETGITATPCGVCDNCR Unmodified 2253.9235 0.92350565 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 27.655 26.354 2 4.7977E-10 12073 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 154.6 151.81 43337000 6899300 0 4171300 0 0 0 3788600 4239800 4362000 1002400 0 0 3310100 0 2586200 0 0 0 4038500 4870200 4068600 0 0 0 7722 127 7530 143513;143514;143515;143516;143517;143518;143519;143520;143521;143522;143523 88492 88492 1 GLNCLSLFAER Unmodified 1278.6391 0.63905624 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 42.813 41.103 2 9.5658E-06 20054 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 175.91 155.01 136520000 24580000 20975000 0 0 0 0 12705000 11016000 11945000 0 0 0 0 0 9298800 0 0 0 14590000 15551000 15857000 0 0 0 7723 953 7531 143524;143525;143526;143527;143528;143529;143530;143531;143532 88493;88494;88495;88496;88497;88498 88496 4 GLNDVNCATSYDDVK Unmodified 1669.7254 0.72536464 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 24.886 23.89 2;3 5.7951E-15 8280 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 225.15 225.15 841890000 16884000 18532000 18102000 4377700 8516500 14135000 53660000 58128000 48543000 19172000 19294000 22662000 36386000 36736000 31844000 3904300 2571200 2210000 71363000 62373000 71369000 76534000 68383000 76212000 7724 205 7532 143533;143534;143535;143536;143537;143538;143539;143540;143541;143542;143543;143544;143545;143546;143547;143548;143549;143550;143551;143552;143553;143554;143555;143556;143557;143558;143559;143560;143561;143562 88499;88500;88501;88502;88503;88504;88505;88506;88507;88508;88509;88510;88511;88512;88513;88514;88515;88516;88517;88518;88519;88520;88521;88522;88523;88524 88508 24 GLNEEQGNVVSR Unmodified 1300.6371 0.63714198 934 P0AFF2 nupC Nucleoside permease NupC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.733 15.323 2 9.6576E-13 4758 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 201.61 198.63 445830000 6097300 6701400 5439500 2222700 2029900 2201700 42426000 42774000 35117000 20598000 19082000 18997000 31552000 30937000 27166000 1816800 0 0 41263000 40368000 41696000 9698700 8688800 8957800 7725 934 7533 143563;143564;143565;143566;143567;143568;143569;143570;143571;143572;143573;143574;143575;143576;143577;143578;143579;143580;143581;143582;143583;143584 88525;88526;88527;88528;88529;88530;88531;88532;88533;88534;88535;88536;88537;88538;88539;88540;88541 88540 17 GLNEQDK Unmodified 802.3821 0.38209649 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 6.2024 7.092 2 0.0055004 1541 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.384 80.719 149520000 0 3755100 0 0 0 0 0 0 0 0 0 0 14023000 16464000 17399000 0 0 0 32052000 33159000 32669000 0 0 0 7726 1124 7534 143585;143586;143587;143588;143589;143590;143591 88542;88543;88544;88545;88546;88547 88543 6 GLNHEFK Unmodified 843.4239 0.42390173 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.619 12.171 2 0.0057321 3171 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.418 84.746 549140000 54559000 45466000 50584000 0 0 12962000 29980000 28745000 0 19172000 15377000 20618000 30508000 27066000 30091000 8870100 12165000 7192000 34448000 34829000 36254000 15898000 17460000 16892000 7727 1348 7535 143592;143593;143594;143595;143596;143597;143598;143599;143600;143601;143602;143603;143604;143605;143606;143607;143608;143609;143610;143611;143612 88548;88549;88550;88551;88552 88550 5 GLNIFNSK Unmodified 891.48142 0.48141661 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.615 27.31 2 0.00033509 12852 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 145.04 122.59 1410200000 144620000 140960000 134640000 0 0 0 131140000 138000000 119260000 0 0 775260 96670000 95917000 95370000 0 0 0 95513000 109620000 107680000 0 0 0 7728 94 7536 143613;143614;143615;143616;143617;143618;143619;143620;143621;143622;143623;143624;143625 88553;88554;88555;88556;88557 88555 3 GLNTWLAR Unmodified 929.5083 0.50830006 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 31.252 29.963 2 0.072908 13970 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.76 45.984 56372000 0 13571000 10541000 0 0 0 0 0 9801700 0 0 0 1728700 6673700 0 0 0 0 10343000 3713200 0 0 0 0 7729 1006 7537 143626;143627;143628;143629;143630;143631;143632 88558 88558 0 GLNVMQNLLTAHPDVQAVFAQNDEMALGALR Unmodified 3335.6755 0.6754651 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 1 2 2 2 54.691 53.247 3;4 3.7658E-82 26391 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 281.63 279.63 4144300000 480130000 437540000 413170000 0 0 0 285540000 267290000 171920000 0 0 0 361800000 352760000 259200000 0 0 0 381820000 384920000 348150000 0 0 0 7730 72 7538 143633;143634;143635;143636;143637;143638;143639;143640;143641;143642;143643;143644;143645;143646;143647;143648;143649;143650;143651;143652;143653;143654 88559;88560;88561;88562;88563;88564;88565;88566;88567;88568;88569;88570;88571;88572 88561 14 GLNVTIMK Unmodified 874.49462 0.49462383 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.868 25.748 2 0.024076 11402 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 65.252 46.297 3101400000 192740000 160030000 150290000 0 0 0 283310000 315830000 0 4272700 3748200 3616200 262900000 267110000 283210000 1966900 1440700 1886500 409380000 373700000 380810000 1503300 2031500 1594900 7731 337 7539 143655;143656;143657;143658;143659;143660;143661;143662;143663;143664;143665;143666;143667;143668;143669;143670;143671;143672;143673;143674 88573;88574;88575;88576;88577;88578 88577 1 GLPADVVPGDILLLDDGR Unmodified 1833.9836 0.98362824 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 2 2 2 1 1 1 2 2 2 2 1 2 1 54.646 53.179 2;3 1.4435E-13 26424 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143.25 124.15 2283500000 190500000 15920000 10590000 0 0 0 284760000 230570000 223790000 6608000 5168600 6726100 316030000 265090000 289180000 0 0 0 209320000 17229000 206750000 5272500 0 0 7732 1184 7540 143675;143676;143677;143678;143679;143680;143681;143682;143683;143684;143685;143686;143687;143688;143689;143690;143691;143692;143693;143694;143695;143696;143697;143698;143699 88579;88580;88581;88582;88583;88584;88585;88586 88579 7 GLPANVR Unmodified 725.41842 0.41842242 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.189 14.648 2 0.080553 4487 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 57.453 28.924 309680000 92056000 101390000 105360000 0 1808800 0 0 1005200 0 1353800 960100 1186500 0 0 0 0 0 0 0 0 0 1387400 1892400 1282900 7733 1374 7541 143700;143701;143702;143703;143704;143705;143706;143707;143708;143709;143710 88587;88588;88589 88587 3 GLPEEEFNALVAQK Unmodified 1543.7882 0.7882229 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 1 2 2 2 1 2 2 42.908 41.362 2;3 1.6608E-06 19362 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 127.76 112.19 328390000 31093000 28774000 30798000 0 0 0 34463000 31349000 5722800 0 0 0 31348000 23330000 24685000 0 0 0 27231000 30162000 29435000 0 0 0 7734 1482 7542 143711;143712;143713;143714;143715;143716;143717;143718;143719;143720;143721;143722;143723;143724;143725;143726;143727;143728;143729;143730;143731;143732 88590;88591;88592;88593;88594 88593 5 GLPEEVIPDLAEHLQAGIVVLGTVGR Unmodified 2681.4752 0.4752156 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.428 53.968 3 2.7261E-16 26823 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.86 153.19 1526200000 135420000 147950000 143750000 7173000 7946200 6768200 172900000 181680000 151760000 12969000 13363000 12249000 119950000 101990000 89090000 0 0 0 81460000 71351000 68459000 0 0 0 7735 585 7543 143733;143734;143735;143736;143737;143738;143739;143740;143741;143742;143743;143744;143745;143746;143747;143748;143749;143750 88595;88596;88597;88598;88599;88600;88601;88602;88603;88604;88605;88606 88597 12 GLPEGAEIAVQLEGER Unmodified 1666.8526 0.85261407 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 8 7 7 1 1 1 44.706 42.578 2;3 1.0518E-18 16513 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 196.15 191.64 11390000000 30053000 29599000 5500100 0 0 0 0 0 0 3673600000 3951000000 3636900000 20305000 20569000 22609000 0 0 0 0 0 0 0 0 0 7736 497 7544 143751;143752;143753;143754;143755;143756;143757;143758;143759;143760;143761;143762;143763;143764;143765;143766;143767;143768;143769;143770;143771;143772;143773;143774;143775;143776;143777;143778;143779;143780 88607;88608;88609;88610;88611;88612;88613;88614;88615;88616;88617;88618;88619;88620;88621;88622;88623;88624;88625;88626;88627;88628;88629;88630;88631;88632;88633;88634;88635;88636;88637;88638;88639;88640;88641;88642;88643 88624 32 GLPEREDSLEESYWDR Unmodified 1979.8861 0.88609904 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 31.879 30.519 3 1.0317E-13 14368 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 129.05 127.14 234100000 20703000 18128000 15665000 0 0 951890 16884000 17488000 14911000 0 0 0 15218000 14345000 15189000 0 0 0 28172000 27363000 29086000 0 0 0 7737 891 7545 143781;143782;143783;143784;143785;143786;143787;143788;143789;143790;143791;143792;143793 88644;88645;88646;88647;88648;88649;88650 88645 7 GLPIPVVITVYADR Unmodified 1511.8712 0.87116466 350 P0A7J7 rplK 50S ribosomal protein L11 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 53.824 52.585 2;3 1.6546E-06 26053 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.04 144.94 5759000000 730630000 613450000 658230000 4588400 7934700 7508000 281150000 222730000 227140000 58802000 84565000 96033000 307280000 335280000 299230000 105300000 97722000 94943000 426820000 456310000 423870000 79123000 79193000 61196000 7738 350 7546 143794;143795;143796;143797;143798;143799;143800;143801;143802;143803;143804;143805;143806;143807;143808;143809;143810;143811;143812;143813;143814;143815;143816;143817;143818;143819;143820;143821;143822;143823;143824;143825;143826;143827;143828;143829;143830;143831;143832;143833;143834;143835;143836;143837;143838 88651;88652;88653;88654;88655;88656;88657;88658;88659;88660;88661;88662;88663;88664;88665;88666;88667;88668;88669;88670;88671;88672;88673;88674;88675 88655 25 GLPLAYNK Unmodified 874.49125 0.49125301 1069 P11447 argH Argininosuccinate lyase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 23.226 22.359 2 0.011065 9799 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.374 62.961 37321000 0 0 0 0 0 0 12455000 12248000 0 0 0 0 0 0 0 0 0 0 12618000 0 0 0 0 0 7739 1069 7547 143839;143840;143841 88676;88677 88676 2 GLPLVLLTNYPSQTGQDLANR Unmodified 2269.2066 0.20664532 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 52.21 50.956 2;3 4.3823E-43 24891 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 312.34 307.8 1206700000 83636000 106970000 88207000 55142000 53028000 52719000 90012000 86174000 87781000 0 0 0 77794000 75063000 75111000 0 0 0 95815000 85423000 89076000 0 2709000 2066900 7740 906 7548 143842;143843;143844;143845;143846;143847;143848;143849;143850;143851;143852;143853;143854;143855;143856;143857;143858;143859;143860;143861;143862;143863;143864;143865;143866;143867;143868;143869;143870;143871;143872;143873 88678;88679;88680;88681;88682;88683;88684;88685;88686;88687;88688;88689;88690;88691;88692;88693;88694;88695;88696;88697;88698;88699;88700;88701;88702;88703 88696 26 GLPQHPIDQNLIEALK Unmodified 1784.9785 0.97848328 450 P0A8N7 epmA Elongation factor P--(R)-beta-lysine ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.432 36.898 3 9.2352E-05 18243 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.391 72.487 220490000 14826000 13293000 11638000 0 0 0 19068000 19668000 20242000 0 0 0 12438000 14692000 13948000 0 503250 0 29094000 26131000 24950000 0 0 0 7741 450 7549 143874;143875;143876;143877;143878;143879;143880;143881;143882;143883;143884;143885;143886 88704;88705;88706;88707;88708 88705 5 GLPQVAVGHVELDYTSVNLIESK Unmodified 2467.2959 0.29585426 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 47.825 46.405 3 9.9054E-05 22635 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 80.293 78.127 109990000 7094700 8952400 0 0 0 0 9673000 12346000 9631500 0 0 0 8177800 9332000 7308800 0 0 0 12648000 14497000 10330000 0 0 0 7742 1966 7550 143887;143888;143889;143890;143891;143892;143893;143894;143895;143896;143897 88709;88710;88711;88712;88713;88714 88710 6 GLPTCHVK Unmodified 910.46947 0.46947171 1202 P22939 ispA Farnesyl diphosphate synthase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.326 12.158 2 0.045162 3171 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 60.799 40.952 200660000 28303000 21691000 23847000 0 0 0 10321000 9611500 7587700 0 0 0 19507000 13942000 17173000 0 0 0 13742000 14834000 20099000 0 0 0 7743 1202 7551 143898;143899;143900;143901;143902;143903;143904;143905;143906;143907;143908;143909 88715;88716;88717;88718;88719;88720;88721 88715 7 GLPVTEVSDYTGFPEMMDGR Unmodified 2199.9817 0.98165568 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 52.036 50.795 2;3 5.6226E-46 24633 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 261.02 258.77 839700000 237130000 222210000 199560000 0 0 0 14160000 10964000 7865800 0 0 0 22371000 20374000 20427000 0 0 0 26730000 28867000 29042000 0 0 0 7744 1111 7552 143910;143911;143912;143913;143914;143915;143916;143917;143918;143919;143920;143921;143922;143923;143924;143925;143926;143927;143928;143929;143930;143931;143932 88722;88723;88724;88725;88726;88727;88728;88729;88730;88731;88732;88733;88734 88730 12 GLPVVATNDVR Unmodified 1139.6299 0.62987176 1060 P10443 dnaE DNA polymerase III subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.955 24.764 2 0.0013041 11105 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 80.787 77.675 88023000 9697000 6867700 6152700 0 0 0 7286500 6027700 4470200 1444200 0 2957400 6549300 4343300 4324400 0 0 0 9500000 9563500 8839200 0 0 0 7745 1060 7553 143933;143934;143935;143936;143937;143938;143939;143940;143941;143942;143943;143944;143945;143946 88735;88736 88735 2 GLPYSIVNQALGK Unmodified 1358.7558 0.75580056 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 1 1 3 4 3 2 2 2 4 3 4 2 2 3 3 2 3 43.319 41.88 2;3 3.4719E-12 14859 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 182.98 167.39 10431000000 82410000 70697000 66488000 2784200 2129800 2183000 48089000 56716000 51329000 562060000 585340000 511920000 43870000 48349000 48951000 1948200000 1775200000 1967300000 76836000 80922000 82717000 785140000 775910000 755020000 7746 458 7554 143947;143948;143949;143950;143951;143952;143953;143954;143955;143956;143957;143958;143959;143960;143961;143962;143963;143964;143965;143966;143967;143968;143969;143970;143971;143972;143973;143974;143975;143976;143977;143978;143979;143980;143981;143982;143983;143984;143985;143986;143987;143988;143989;143990;143991;143992;143993;143994;143995;143996;143997;143998;143999 88737;88738;88739;88740;88741;88742;88743;88744;88745;88746;88747;88748;88749;88750;88751;88752;88753;88754;88755;88756;88757;88758;88759;88760;88761;88762;88763;88764;88765;88766;88767;88768;88769;88770;88771;88772;88773;88774;88775;88776;88777;88778;88779;88780;88781;88782;88783;88784;88785;88786;88787;88788;88789;88790;88791;88792;88793;88794;88795;88796;88797;88798;88799;88800 88745 59 GLPYSIVNQALGKK Unmodified 1486.8508 0.85076357 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 3 4 3 2 2 2 35.561 34.269 2;3 6.0971E-08 11398 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 169.41 168.92 6617300000 0 0 0 2354900 1846700 1626100 0 0 0 267900000 287980000 243910000 0 0 0 1560000000 1309500000 1446200000 0 0 0 478990000 524780000 492160000 7747 458 7555 144000;144001;144002;144003;144004;144005;144006;144007;144008;144009;144010;144011;144012;144013;144014;144015;144016;144017;144018;144019;144020;144021;144022;144023;144024;144025 88801;88802;88803;88804;88805;88806;88807;88808;88809;88810;88811;88812;88813;88814;88815;88816;88817;88818;88819;88820;88821;88822;88823;88824;88825;88826;88827;88828;88829;88830;88831;88832;88833;88834;88835;88836;88837;88838;88839;88840;88841;88842;88843;88844;88845;88846 88818 46 GLQEITDWIEK Unmodified 1330.6769 0.67688153 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 48.075 46.679 2 7.6061E-05 22804 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 144.77 131.98 160440000 25637000 25882000 23020000 0 0 0 11533000 15673000 12577000 0 0 0 8593100 12151000 10896000 0 0 0 7855100 0 6622700 0 0 0 7748 88 7556 144026;144027;144028;144029;144030;144031;144032;144033;144034;144035;144036 88847;88848;88849;88850;88851;88852;88853;88854;88855;88856;88857 88850 11 GLQELVVATGGSLHR Unmodified 1535.842 0.8419898 1810 P76038 puuD Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 34.304 32.889 3 6.7243E-07 15498 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 112.02 109.16 181210000 61032000 58146000 54132000 0 0 0 1307200 0 0 0 0 0 0 0 0 0 0 0 0 0 6592000 0 0 0 7749 1810 7557 144037;144038;144039;144040;144041 88858;88859;88860 88860 3 GLQETSLTPYK Unmodified 1235.6398 0.63976774 1605 P52108 rstA Transcriptional regulatory protein RstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.956 23.87 2 5.7239E-05 10664 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 136.57 131.58 368820000 18182000 25643000 20325000 1654400 1442300 1496300 0 37154000 33161000 5084100 4236700 3987700 31246000 26325000 24847000 0 0 0 43145000 42150000 39967000 3510900 2724000 2535500 7750 1605 7558 144042;144043;144044;144045;144046;144047;144048;144049;144050;144051;144052;144053;144054;144055;144056;144057;144058;144059;144060;144061 88861;88862;88863;88864;88865;88866;88867;88868;88869;88870;88871;88872;88873;88874;88875 88867 15 GLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEK Unmodified 3926.8682 0.86815284 94 P04825 pepN Aminopeptidase N yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 53.874 52.426 4 2.3344E-11 25906 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 110.7 106.17 435810000 40497000 37060000 36790000 0 0 0 56374000 51573000 42870000 0 0 0 0 26507000 32335000 0 0 0 39678000 39884000 32246000 0 0 0 7751 94 7559 144062;144063;144064;144065;144066;144067;144068;144069;144070;144071;144072 88876;88877;88878;88879;88880;88881;88882;88883 88877 8 GLQFLDLIQEGNIGLMK Oxidation (M) 1904.0077 0.0077344999 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 2 3 2 54.672 54.727 2;3 1.2695E-18 21365 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 186.76 175.5 630020000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 204780000 223870000 201380000 0 0 0 0 0 0 7752 36 7560 144073;144074;144075;144076;144077;144078;144079 88884;88885;88886;88887;88888;88889 88884 16 6 GLQFLDLIQEGNIGLMK Unmodified 1888.0128 0.012819878 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 3 1 1 1 1 1 1 55.228 54.227 2;3 2.1497E-50 20883 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 290.18 265.32 18075000000 86805000 85085000 78501000 3148800 3776000 2251700 82630000 71502000 77261000 20115000 17807000 16685000 99343000 84683000 75934000 5237800000 5832300000 5793500000 129450000 114060000 127990000 11383000 11984000 11464000 7753 36 7560 144080;144081;144082;144083;144084;144085;144086;144087;144088;144089;144090;144091;144092;144093;144094;144095;144096;144097;144098;144099;144100;144101;144102;144103;144104;144105;144106;144107;144108;144109 88890;88891;88892;88893;88894;88895;88896;88897;88898;88899;88900;88901;88902;88903;88904;88905;88906;88907;88908;88909 88894 20 GLQLIGWR Unmodified 941.54469 0.54468557 1311 P27836 wecG UDP-N-acetyl-D-mannosaminuronic acid transferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 41.384 39.437 2 0.0015707 18459 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.74 91.591 38236000 0 0 0 0 0 0 3709900 4305900 3829100 1821900 0 1399800 2855700 2631800 0 0 0 0 6614900 5209600 5857300 0 0 0 7754 1311 7561 144110;144111;144112;144113;144114;144115;144116;144117;144118;144119 88910 88910 1 GLQQIQQADVVVYDR Unmodified 1730.8951 0.89514758 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.076 33.62 2 5.1368E-12 16055 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 176.42 166.24 106790000 10754000 9467000 8669600 0 0 0 9970600 8970700 8762100 0 0 0 5857200 5313300 6426900 0 0 0 10699000 10884000 11019000 0 0 0 7755 843 7562 144120;144121;144122;144123;144124;144125;144126;144127;144128;144129;144130;144131 88911;88912;88913;88914;88915;88916;88917;88918 88914 6 GLSFGGSLIRPEATGYGLVYFTEAMLK Unmodified 2876.4783 0.47825207 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.069 53.607 3 6.1107E-16 26546 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 144.49 141.95 546300000 149740000 152500000 146660000 0 0 0 0 13638000 10670000 0 0 0 7442100 10065000 5409900 0 0 0 16154000 16545000 17481000 0 0 0 7756 26 7563 144132;144133;144134;144135;144136;144137;144138;144139;144140;144141;144142 88919;88920;88921 88920 3 GLSGYDSPYVPGWDCHGLPIELK Unmodified 2559.2104 0.21041007 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 1 49.871 48.473 2;3 5.4182E-15 23560 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 197.47 172.35 6301100000 675640000 677110000 538280000 1210000 0 0 531140000 469600000 528950000 0 0 0 388550000 390140000 376480000 0 0 0 610860000 560490000 552650000 0 0 0 7757 58 7564 144143;144144;144145;144146;144147;144148;144149;144150;144151;144152;144153;144154;144155;144156;144157;144158;144159;144160;144161;144162;144163;144164;144165 88922;88923;88924;88925;88926;88927;88928;88929;88930;88931;88932;88933;88934 88931 13 GLSLGMR Oxidation (M) 748.39016 0.39015876 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 4 1 2 6 5 8 2 3 2 7 8 8 3 3 2 8 9 8 18.775 18.84 2 0.0064125 4536 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 101.33 62.958 2669800000 0 7442200 9593600 0 0 642140 24346000 12680000 16792000 220440000 171130000 180430000 8977100 9274100 4521700 526280000 349720000 382240000 19054000 18151000 14770000 259900000 235010000 198460000 7758 383 7565 144166;144167;144168;144169;144170;144171;144172;144173;144174;144175;144176;144177;144178;144179;144180;144181;144182;144183;144184;144185;144186;144187;144188;144189;144190;144191;144192;144193;144194;144195;144196;144197;144198;144199;144200;144201;144202;144203;144204;144205;144206;144207;144208;144209;144210;144211;144212;144213;144214;144215;144216;144217;144218;144219;144220;144221;144222;144223;144224;144225;144226;144227;144228;144229;144230;144231;144232;144233;144234;144235;144236;144237;144238;144239;144240;144241;144242;144243;144244;144245;144246;144247;144248;144249;144250;144251;144252;144253;144254;144255;144256;144257;144258 88935;88936;88937;88938;88939;88940;88941;88942;88943;88944;88945;88946;88947;88948;88949;88950;88951;88952;88953;88954;88955;88956;88957;88958;88959;88960;88961;88962;88963;88964;88965;88966;88967;88968;88969;88970;88971;88972;88973;88974;88975;88976;88977;88978;88979;88980;88981;88982;88983 88944 165 49 GLSLGMR Unmodified 732.39524 0.39524414 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 3 3 4 3 3 2 7 7 7 2 2 2 5 4 5 23.55 23.098 1;2 0.00027533 6919 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 160.1 105.57 54912000000 554060000 545520000 500880000 0 2778100 0 413080000 413880000 357630000 2894400000 3151000000 2829400000 435610000 405760000 365230000 10095000000 9090800000 10263000000 474970000 497800000 544760000 3693100000 3748300000 3635200000 7759 383 7565 144259;144260;144261;144262;144263;144264;144265;144266;144267;144268;144269;144270;144271;144272;144273;144274;144275;144276;144277;144278;144279;144280;144281;144282;144283;144284;144285;144286;144287;144288;144289;144290;144291;144292;144293;144294;144295;144296;144297;144298;144299;144300;144301;144302;144303;144304;144305;144306;144307;144308;144309;144310;144311;144312;144313;144314;144315;144316;144317;144318;144319;144320;144321;144322;144323;144324;144325;144326;144327;144328;144329;144330 88984;88985;88986;88987;88988;88989;88990;88991;88992;88993;88994;88995;88996;88997;88998;88999;89000;89001;89002;89003;89004;89005;89006;89007;89008;89009;89010;89011;89012;89013;89014;89015;89016;89017;89018;89019;89020;89021;89022;89023;89024;89025;89026;89027;89028;89029;89030 88984 46 GLSQGSGVAFDNEK Unmodified 1407.663 0.66302238 77 P02943 lamB Maltoporin yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.728 20.867 2 9.1501E-11 8382 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 180.97 176.03 221850000 0 0 2543400 1387800 1353000 0 0 4501500 5062300 12537000 10575000 10152000 9277600 6923800 7871600 6546500 3238900 2365200 31931000 31553000 28200000 16732000 14887000 14210000 7760 77 7566 144331;144332;144333;144334;144335;144336;144337;144338;144339;144340;144341;144342;144343;144344;144345;144346;144347;144348;144349;144350 89031;89032;89033;89034;89035;89036;89037;89038;89039;89040 89035 10 GLSVLMLEAQDLACATSSASSK Unmodified 2238.0872 0.087183387 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 3 3 2 3 3 2 2 2 2 2 2 2 2 3 2 2 2 54.078 52.813 2;3 4.4587E-118 21228 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 377.09 375.71 2888100000 11204000 6304800 11824000 0 0 5817200 255090000 285300000 260330000 319130000 338580000 345710000 109720000 112670000 103510000 84438000 82634000 98383000 103480000 95098000 111340000 52587000 47483000 47472000 7761 1088 7567 144351;144352;144353;144354;144355;144356;144357;144358;144359;144360;144361;144362;144363;144364;144365;144366;144367;144368;144369;144370;144371;144372;144373;144374;144375;144376;144377;144378;144379;144380;144381;144382;144383;144384;144385;144386;144387;144388;144389;144390;144391;144392;144393;144394;144395;144396;144397;144398 89041;89042;89043;89044;89045;89046;89047;89048;89049;89050;89051;89052;89053;89054;89055;89056;89057;89058;89059;89060;89061;89062;89063;89064;89065;89066;89067;89068;89069;89070;89071;89072 89051 32 GLTAVSDMSHIR Unmodified 1285.6449 0.6448699 1542 P39452 nrdE Ribonucleoside-diphosphate reductase 2 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 1 1 2 2 1 2 2 2 23.171 22.56 2;3 0.00025515 9644 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 120.27 107.99 75146000 13915000 3430300 7086100 0 0 0 0 0 0 0 0 0 7157700 7011500 4141300 0 0 0 9682700 12436000 10286000 0 0 0 7762 1542 7568 144399;144400;144401;144402;144403;144404;144405;144406;144407;144408;144409;144410;144411;144412;144413 89073;89074;89075 89075 1 GLTDAAQQVVAAVEGK Unmodified 1555.8206 0.82058566 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 52.084 50.803 2;3 2.8306E-24 24803 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 268.08 259.5 12960000000 1551100000 1503500000 1292500000 10706000 7739800 8222500 577100000 597010000 578170000 0 1483600 2989800 733620000 730570000 644440000 0 0 0 1487700000 1589200000 1621100000 10329000 5545400 7310200 7763 392 7569 144414;144415;144416;144417;144418;144419;144420;144421;144422;144423;144424;144425;144426;144427;144428;144429;144430;144431;144432;144433;144434;144435;144436;144437;144438;144439;144440;144441;144442;144443;144444;144445;144446;144447;144448 89076;89077;89078;89079;89080;89081;89082;89083;89084;89085;89086;89087;89088;89089;89090;89091;89092;89093;89094;89095;89096;89097;89098;89099;89100;89101;89102;89103 89094 27 GLTDKFPEDSTK Unmodified 1336.6511 0.65106071 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 18.066 18.665 2 0.0026766 6912 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 74.962 56.737 34549000 0 0 0 0 0 0 2976900 4786400 2654800 0 0 0 2948300 3715000 2851300 0 0 0 4600700 4106600 5909100 0 0 0 7764 193 7570 144449;144450;144451;144452;144453;144454;144455;144456;144457 89104;89105 89105 0 GLTEALTR Unmodified 859.47633 0.47633123 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 20.703 20.891 2 0.0003704 6913 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 143 85.541 9419700000 656230000 665780000 538350000 26697000 27819000 23362000 1114400000 1095200000 1261600000 55507000 47853000 52680000 714780000 631330000 570400000 16578000 10839000 12566000 547560000 646450000 633860000 23446000 23749000 22655000 7765 1046 7571 144458;144459;144460;144461;144462;144463;144464;144465;144466;144467;144468;144469;144470;144471;144472;144473;144474;144475;144476;144477;144478;144479;144480;144481;144482;144483 89106;89107;89108;89109;89110;89111;89112;89113;89114;89115;89116;89117;89118;89119;89120;89121;89122;89123;89124;89125;89126;89127;89128;89129 89109 18 GLTFTYEPK Unmodified 1054.5335 0.53351176 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.975 28.545 2 0.001128 13188 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 92.47 87.736 20267000000 3007900000 2908900000 2644400000 21875000 19402000 20984000 1991400000 1840900000 1798900000 5091000 4606400 3764500 940170000 999480000 958710000 4746100 1712100 0 1024900000 1006400000 1049700000 4675400 3940300 4238800 7766 397 7572 144484;144485;144486;144487;144488;144489;144490;144491;144492;144493;144494;144495;144496;144497;144498;144499;144500;144501;144502;144503;144504;144505;144506 89130;89131;89132;89133;89134;89135;89136;89137;89138;89139;89140;89141;89142;89143;89144;89145;89146 89136 17 GLTNEALNVTLVEAGER Unmodified 1784.9268 0.92684164 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 42.695 40.763 2;3 7.4344E-51 19108 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 292.73 279.3 638300000 17108000 8129000 8462700 0 0 0 70834000 66107000 73485000 41323000 37007000 39726000 30282000 30061000 27377000 0 0 0 40472000 39125000 42229000 21472000 25893000 19204000 7767 27 7573 144507;144508;144509;144510;144511;144512;144513;144514;144515;144516;144517;144518;144519;144520;144521;144522;144523;144524;144525;144526;144527;144528;144529;144530;144531;144532;144533;144534;144535;144536;144537;144538;144539;144540 89147;89148;89149;89150;89151;89152;89153;89154;89155;89156;89157;89158;89159;89160;89161;89162;89163;89164;89165;89166;89167;89168;89169;89170;89171 89170 25 GLTPQTLR Unmodified 884.50797 0.50796571 760 P0AD01 dcuR Transcriptional regulatory protein DcuR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.337 18.695 2 0.01678 5210 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 67.981 45.85 102730000 8140000 8964200 7044200 478610 625170 458080 8770400 9739600 9068700 1512800 1277300 1537000 5658900 0 0 6273100 5569200 8053200 6958100 6582300 6016500 0 0 0 7768 760 7574 144541;144542;144543;144544;144545;144546;144547;144548;144549;144550;144551;144552;144553;144554;144555;144556;144557;144558;144559 89172;89173 89173 2 GLTQAAR Unmodified 715.39769 0.39768698 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS 1 10.893 11.64 2 0.0096235 2808 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.627 38.779 75189000 0 0 75189000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7769 96 7575 144560 89174 89174 1 GLTSAITAAEIK Unmodified 1173.6605 0.66050319 1359 P31119 aas Bifunctional protein Aas;2-acylglycerophosphoethanolamine acyltransferase;Acyl-[acyl-carrier-protein] synthetase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.851 30.281 2 0.065842 13596 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 43.297 31.703 55932000 0 0 0 0 0 0 8171600 7780700 7320400 3005400 0 0 3203400 3469500 3844100 0 0 0 6092300 6227600 5932300 0 0 884510 7770 1359 7576 144561;144562;144563;144564;144565;144566;144567;144568;144569;144570;144571 89175;89176 89176 0 GLTSEVVAAVAK Unmodified 1143.6499 0.6499385 866 P0AEJ6 eutB Ethanolamine ammonia-lyase heavy chain yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.679 31.982 2 0.0061977 15069 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.986 76.847 64258000 5428700 7045900 6555500 1572700 1600600 1681800 3732100 3273900 4573100 1279600 1188900 1457100 4141200 3383000 0 0 0 0 4847700 3709300 3219600 2104000 1612300 1850900 7771 866 7577 144572;144573;144574;144575;144576;144577;144578;144579;144580;144581;144582;144583;144584;144585;144586;144587;144588;144589;144590;144591 89177 89177 1 GLTSSTPTGDATKR Unmodified 1390.7052 0.70522155 1972 Q47146 fadE Acyl-coenzyme A dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 11.371 12.458 3 0.11853 2510 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 30.483 26.766 6882700 0 0 0 2988100 1856600 2038000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7772 1972 7578 144592;144593;144594 89178;89179 89178 0 GLTSTNR Unmodified 747.38752 0.38751622 662 P0ABJ3 cyoC Cytochrome bo(3) ubiquinol oxidase subunit 3 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 10.35 11.035 2 0.019655 2453 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.496 59.117 106170000 0 14206000 0 0 0 0 15277000 19224000 15899000 0 0 0 0 0 0 0 0 0 0 0 38001000 0 0 3566200 7773 662 7579 144595;144596;144597;144598;144599;144600 89180;89181 89181 2 GLTVTPYQNR Unmodified 1147.5986 0.59857163 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 21.373 21.359 2 9.5759E-06 8538 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.02 103.67 229620000 0 0 26284000 0 0 0 70094000 63233000 69713000 0 0 294600 0 0 0 0 0 0 0 0 0 0 0 0 7774 1588 7580 144601;144602;144603;144604;144605;144606;144607;144608;144609;144610;144611;144612;144613 89182;89183;89184;89185;89186;89187;89188;89189;89190;89191;89192;89193 89185 12 GLTYLHPEIPVEIR Unmodified 1635.8984 0.89844205 1104 P15067 glgX Glycogen debranching enzyme yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.285 38.62 3 5.8858E-05 19135 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 85.837 79.539 171050000 22534000 16228000 14804000 0 0 0 18244000 21493000 21310000 0 0 0 8197500 8868500 8005800 0 0 0 11662000 10767000 8932800 0 0 0 7775 1104 7581 144614;144615;144616;144617;144618;144619;144620;144621;144622;144623;144624;144625 89194;89195;89196;89197;89198;89199;89200 89195 7 GLVAMNMMEGTLVQIR Unmodified 1761.894 0.89396707 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 1 2 2 52.547 51.338 2;3 5.9473E-40 20648 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 268.77 243.34 318880000 7224300 7143000 0 1773500 1125300 1564800 31252000 29861000 29352000 20386000 22985000 25166000 24019000 28554000 32972000 7901900 0 1383600 6894700 14410000 13526000 1638100 5284300 4462200 7776 25 7582 144626;144627;144628;144629;144630;144631;144632;144633;144634;144635;144636;144637;144638;144639;144640;144641;144642;144643;144644;144645;144646;144647;144648;144649;144650;144651;144652;144653;144654;144655;144656;144657;144658;144659;144660;144661;144662 89201;89202;89203;89204;89205;89206;89207;89208;89209;89210;89211;89212;89213;89214;89215;89216 89203 16 GLVAQVTDEEALAER Unmodified 1599.8104 0.8104149 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.051 33.579 2 6.8031E-12 15982 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 212.89 198.21 1782300000 131630000 142850000 116800000 0 1771300 0 161990000 161240000 161710000 0 0 0 122240000 131260000 135740000 0 0 0 167290000 175820000 171910000 0 0 0 7777 1024 7583 144663;144664;144665;144666;144667;144668;144669;144670;144671;144672;144673;144674;144675 89217;89218;89219;89220;89221;89222;89223;89224;89225;89226;89227;89228;89229;89230 89224 14 GLVDSEK Unmodified 746.38103 0.38103386 1063 P10906 ugpE sn-glycerol-3-phosphate transport system permease protein UgpE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.714 12.373 2 0.0021324 2888 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 117.7 95.076 2734600000 664530000 813180000 668590000 0 0 0 102240000 95543000 94590000 3528600 3874300 4174700 41784000 34738000 37208000 0 0 0 54946000 62944000 46008000 1497000 0 5240900 7778 1063 7584 144676;144677;144678;144679;144680;144681;144682;144683;144684;144685;144686;144687;144688;144689;144690;144691;144692 89231;89232 89232 2 GLVEPQQER Unmodified 1054.5407 0.5407224 1162 P19931 hyaE Hydrogenase-1 operon protein HyaE yes yes 0 0 0 By MS/MS By matching 1 1 13.877 14.606 2 5.5819E-05 4680 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.52 132.37 56374000 0 0 0 0 0 0 28468000 27906000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7779 1162 7585 144693;144694 89233 89233 1 GLVEQTNASLLNENANK Unmodified 1813.917 0.91700524 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.695 28.372 2 4.1339E-76 13367 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 337.99 314.31 421500000 9585700 9732600 7585200 0 0 0 45734000 42707000 43785000 0 0 0 44582000 41876000 43251000 0 0 0 43950000 43184000 45531000 0 0 0 7780 1323 7586 144695;144696;144697;144698;144699;144700;144701;144702;144703;144704;144705;144706 89234;89235;89236;89237;89238;89239;89240;89241;89242;89243;89244 89236 11 GLVIPAFNR Unmodified 985.5709 0.57090032 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 38.574 37.075 2 0.00024337 17978 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 122.79 100.66 61647000 0 0 0 0 0 0 0 0 0 0 0 0 13004000 12868000 13639000 0 0 0 0 22136000 0 0 0 0 7781 193 7587 144707;144708;144709;144710;144711;144712;144713 89245;89246;89247;89248;89249;89250;89251 89247 7 GLVLIEELLVK Unmodified 1224.7693 0.76932535 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 55.007 53.709 2 2.8113E-05 20349 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 133.57 133.57 2038400000 52452000 42450000 37924000 14485000 13273000 13615000 88641000 78189000 76341000 142450000 131700000 112710000 71973000 65603000 68091000 125610000 167840000 220230000 102820000 81223000 90332000 78929000 80193000 81278000 7782 1057 7588 144714;144715;144716;144717;144718;144719;144720;144721;144722;144723;144724;144725;144726;144727;144728;144729;144730;144731;144732;144733;144734;144735;144736;144737;144738;144739;144740;144741 89252;89253;89254;89255;89256;89257;89258;89259;89260;89261;89262;89263;89264;89265;89266;89267;89268;89269;89270;89271;89272;89273;89274;89275 89253 24 GLVNATGPWVK Unmodified 1140.6291 0.62914348 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.126 31.665 2 1.032E-05 15006 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.81 131.37 3946800000 11305000 8287700 10760000 5913800 5696600 6006800 507620000 501680000 473700000 445060000 333390000 397250000 152290000 123960000 114170000 49021000 34800000 41587000 180070000 171250000 185960000 62976000 58044000 66030000 7783 1088 7589 144742;144743;144744;144745;144746;144747;144748;144749;144750;144751;144752;144753;144754;144755;144756;144757;144758;144759;144760;144761;144762;144763;144764;144765 89276;89277;89278;89279;89280;89281;89282;89283;89284;89285;89286;89287;89288;89289;89290;89291;89292;89293;89294;89295;89296;89297;89298;89299;89300 89290 25 GLVQMIELAR Unmodified 1128.6325 0.6325143 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.05 44.42 2 0.0022217 17848 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 80.165 74.062 107250000 6090000 4748000 5463600 0 0 1139600 10272000 7235000 7207700 5166200 4004600 4111900 10171000 8726100 7156500 0 0 0 8649500 8382600 7512600 0 1217400 0 7784 1475 7590 144766;144767;144768;144769;144770;144771;144772;144773;144774;144775;144776;144777;144778;144779;144780;144781;144782 89301 89301 1 GLVTPVLR Unmodified 853.53854 0.53853756 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.321 27.058 2 7.3797E-05 12370 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.34 147.53 8087800000 736770000 724350000 683690000 14394000 14332000 15233000 353860000 387810000 327190000 13157000 12886000 10609000 562390000 460880000 478980000 7615000 5846000 6817800 1104200000 1084800000 950500000 42022000 41614000 47870000 7785 938 7591 144783;144784;144785;144786;144787;144788;144789;144790;144791;144792;144793;144794;144795;144796;144797;144798;144799;144800;144801;144802;144803;144804;144805;144806 89302;89303;89304;89305;89306;89307;89308;89309;89310;89311;89312;89313;89314;89315;89316;89317;89318;89319;89320;89321;89322;89323;89324 89313 23 GLVYMTR Unmodified 838.43711 0.43710895 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.007 22.043 2 0.001881 8979 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.15 101.17 1183000000 119650000 106860000 102660000 649400 0 0 121730000 144090000 142520000 0 0 0 65408000 60549000 62558000 0 0 0 96383000 76071000 83845000 0 0 0 7786 1545 7592 144807;144808;144809;144810;144811;144812;144813;144814;144815;144816;144817;144818;144819 89325;89326;89327;89328;89329;89330 89327 6 GMAACQTLFTILDSEQEKDEGKR Unmodified 2626.2367 0.23670117 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.121 40.166 4 0.0021789 14127 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 58.627 58.533 103260000 3744500 0 0 3365200 3464500 3286400 3297400 7384800 4957800 10059000 8427900 12146000 0 5225500 4715500 0 0 0 5500200 0 8532200 6950100 6255300 5945400 7787 1631 7593 144820;144821;144822;144823;144824;144825;144826;144827;144828;144829;144830;144831;144832;144833;144834;144835;144836 89331;89332;89333 89333 3 GMAFALHYR Unmodified 1064.5226 0.52256992 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.157 24.805 3 0.029977 11454 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 49.423 48.163 51092000 8240000 9144800 7641900 1709300 1507100 0 6277100 4880400 3927600 1623900 1959100 2803500 0 0 0 0 0 0 0 0 1377800 0 0 0 7788 1377 7594 144837;144838;144839;144840;144841;144842;144843;144844;144845;144846;144847;144848 89334 89334 1 GMAGGLIAIRPPVGSAFR Unmodified 1768.977 0.97704349 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 41.159 39.49 2;3 9.4986E-07 19066 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.507 91.449 740670000 147140000 146780000 129100000 0 844610 0 45255000 43201000 50910000 0 0 0 24991000 25331000 25886000 0 0 0 33068000 32882000 35284000 0 0 0 7789 218 7595 144849;144850;144851;144852;144853;144854;144855;144856;144857;144858;144859;144860;144861;144862;144863;144864;144865;144866;144867;144868;144869;144870;144871;144872;144873 89335;89336;89337;89338;89339;89340;89341;89342;89343;89344;89345;89346;89347;89348;89349;89350 89344 16 GMASGAVIESFLDK Unmodified 1423.7017 0.70171607 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.932 45.66 2 2.7869E-06 18428 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 122.7 119.97 616830000 87175000 92420000 84446000 0 0 0 33142000 31382000 24497000 7348100 8301000 7239800 43018000 42395000 41139000 9838800 5797900 4998100 30095000 28515000 32840000 0 0 2244200 7790 297 7596 144874;144875;144876;144877;144878;144879;144880;144881;144882;144883;144884;144885;144886;144887;144888;144889;144890;144891;144892 89351;89352;89353;89354;89355;89356;89357 89353 7 GMDVADK Unmodified 734.32689 0.3268898 952 P0AFL3 ppiA Peptidyl-prolyl cis-trans isomerase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.471 12.303 2 0.087831 3051 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 56.122 43.691 555900000 44836000 5694700 40199000 0 0 0 51710000 43336000 43953000 0 0 0 46915000 43898000 44266000 0 0 0 63141000 71467000 56484000 0 0 0 7791 952 7597 144893;144894;144895;144896;144897;144898;144899;144900;144901;144902;144903;144904 89358 89358 1 GMDVLEFGGIEPNPAYETLMNAVK Unmodified 2594.2397 0.23966128 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 55.258 53.763 3 1.8307E-06 25459 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 91.729 89.321 206000000 0 0 0 0 0 0 28617000 19889000 18149000 0 0 0 23117000 24936000 29909000 0 0 0 20395000 19605000 21383000 0 0 0 7792 1959 7598 144905;144906;144907;144908;144909;144910;144911;144912;144913 89359;89360 89360 2 GMEEIVK Unmodified 804.40514 0.40514012 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 18.258 18.565 2 0.0079339 5446 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 86.512 32.802 254120000 0 0 0 703100 796520 743720 91779000 0 88268000 15025000 19744000 17457000 0 0 0 0 0 0 0 0 3654500 0 0 15954000 7793 723 7599 144914;144915;144916;144917;144918;144919;144920;144921;144922;144923;144924;144925;144926 89361;89362;89363;89364;89365;89366 89363 5 GMEGAINAK Unmodified 889.43275 0.43275186 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 12.984 13.72 2 0.00028035 3896 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 119.57 105.58 8874100000 1377500000 1340700000 1338200000 5903500 6785300 7162400 401870000 424630000 411210000 0 2222200 2367500 509250000 422120000 428880000 0 0 0 749370000 761260000 678760000 2088000 2150000 1689700 7794 179 7600 144927;144928;144929;144930;144931;144932;144933;144934;144935;144936;144937;144938;144939;144940;144941;144942;144943;144944;144945;144946;144947;144948;144949 89367;89368;89369;89370;89371;89372;89373;89374;89375;89376;89377;89378 89376 12 GMEGAINAK Oxidation (M) 905.42767 0.42766648 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 10.614 11.422 2 0.0070053 2820 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 71.342 57.567 521770000 111930000 506980 0 440070 0 0 80549000 0 49931000 0 0 0 0 0 0 0 0 0 92320000 90490000 95605000 0 0 0 7795 179 7600 144950;144951;144952;144953;144954;144955;144956;144957 89379 89379 52 0 GMFAPER Unmodified 806.37451 0.3745087 1463 P37313 dppF Dipeptide transport ATP-binding protein DppF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 17.871 18.518 2 0.015808 5036 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 81.381 81.381 51104000 14205000 13060000 8622300 4865000 5474700 4877800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7796 1463 7601 144958;144959;144960;144961;144962;144963 89380;89381;89382 89382 3 GMFLPDR Unmodified 834.40581 0.40580882 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.841 27.343 2 0.0071951 12990 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 92.319 92.319 1125000000 86008000 78596000 84721000 0 0 0 116240000 107680000 106590000 2580500 1684600 1912000 73400000 82431000 68583000 0 0 0 112730000 105780000 93360000 950450 1040500 735150 7797 60 7602 144964;144965;144966;144967;144968;144969;144970;144971;144972;144973;144974;144975;144976;144977;144978;144979;144980;144981 89383;89384;89385 89383 2 GMFSMMNYLLPLK Unmodified 1543.7601 0.76009935 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.302 53.85 2 6.7923E-05 26643 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.97 106.75 1070600000 178340000 180600000 154740000 0 746390 0 40773000 0 44735000 2769100 0 0 73959000 69597000 73753000 0 0 0 86081000 81181000 83298000 0 0 0 7798 1195 7603 144982;144983;144984;144985;144986;144987;144988;144989;144990;144991;144992;144993;144994;144995 89386;89387;89388;89389;89390;89391;89392;89393;89394;89395;89396;89397 89393 12 GMFSYTGLSAAQVDR Unmodified 1601.7508 0.75079153 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.483 37.852 2 7.548E-27 18376 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 227.37 223.49 437970000 48953000 51146000 43607000 0 0 0 37087000 0 37097000 0 0 0 30605000 24854000 32389000 0 0 0 41575000 46558000 44101000 0 0 0 7799 91 7604 144996;144997;144998;144999;145000;145001;145002;145003;145004;145005;145006;145007 89398;89399;89400;89401;89402;89403;89404;89405;89406;89407;89408;89409 89402 12 GMFVDQDK Unmodified 938.41677 0.41676744 593 P0AAG8 mglA Galactose/methyl galactoside import ATP-binding protein MglA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 18.811 19.071 2 0.076609 5310 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 54.157 50.304 13934000 4310600 0 0 1692400 1458800 0 0 0 0 0 0 0 0 0 0 1668100 891570 1279000 0 0 0 2633900 0 0 7800 593 7605 145008;145009;145010;145011;145012;145013;145014 89410 89410 1 GMGESNPVTGNTCDNVK Unmodified 1778.7563 0.75634719 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 18.045 18.429 2;3 2.5843E-15 6922 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 225.33 225.33 3491800000 169640000 168140000 132740000 54618000 52963000 53755000 133110000 158840000 134830000 75662000 81592000 69908000 261650000 248820000 224430000 19039000 22545000 23349000 415690000 406980000 411240000 60045000 53995000 58181000 7801 480 7606 145015;145016;145017;145018;145019;145020;145021;145022;145023;145024;145025;145026;145027;145028;145029;145030;145031;145032;145033;145034;145035;145036;145037;145038;145039;145040;145041;145042;145043;145044;145045;145046;145047;145048;145049;145050;145051;145052;145053;145054;145055;145056;145057;145058;145059;145060;145061;145062 89411;89412;89413;89414;89415;89416;89417;89418;89419;89420;89421;89422;89423;89424;89425;89426;89427;89428;89429;89430;89431;89432;89433;89434;89435;89436;89437;89438;89439;89440;89441;89442;89443;89444;89445;89446;89447;89448;89449;89450;89451;89452;89453;89454;89455 89424 45 GMGESNPVTGNTCDNVK Oxidation (M) 1794.7513 0.75126182 480 P0A910 ompA Outer membrane protein A yes yes 0 1 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.689 15.185 2 9.5272E-05 4894 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.617 83.499 29955000 0 0 2433500 0 0 0 1611300 0 0 2878200 1802000 1460000 0 4393100 0 0 0 0 5056000 3898700 5582700 839690 0 0 7802 480 7606 145063;145064;145065;145066;145067;145068;145069;145070;145071;145072 89456;89457;89458 89457 286 3 GMGGLIR Unmodified 702.38468 0.38467945 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 19.557 20.061 2 0.013032 7634 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.185 75.452 71788000 12354000 8905400 10488000 0 0 0 4348900 0 0 0 0 0 4627000 2811400 3539800 0 0 0 8821500 7309000 7710400 0 873120 0 7803 1459 7607 145073;145074;145075;145076;145077;145078;145079;145080;145081;145082;145083 89459;89460;89461;89462;89463;89464;89465 89464 7 GMGLLIGAELKPQYK Unmodified 1616.896 0.89599921 1150 P18335 argD Acetylornithine/succinyldiaminopimelate aminotransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.428 35.792 3 0.1652 17210 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 21.458 16.744 86730000 14052000 11294000 11355000 0 0 226510 6369100 0 7196800 0 0 0 4293400 5903000 4530900 0 0 0 7474400 8804500 5230000 0 0 0 7804 1150 7608 145084;145085;145086;145087;145088;145089;145090;145091;145092;145093;145094;145095 89466 89466 0 GMGSLGAMSK Unmodified 937.43612 0.43612268 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 1 1 2 1 2 2 2 1 1 1 18.39 18.824 1;2 0.00048825 7035 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 99.802 87.657 2479800000 186830000 217110000 191430000 1453200 0 0 170410000 173120000 150740000 1999400 2144300 1797600 242850000 228990000 258510000 0 0 1878700 215270000 227030000 197920000 4132800 2688300 3488700 7805 788 7609 145096;145097;145098;145099;145100;145101;145102;145103;145104;145105;145106;145107;145108;145109;145110;145111;145112;145113;145114;145115;145116;145117;145118;145119;145120;145121;145122;145123;145124;145125 89467;89468;89469;89470;89471;89472;89473;89474;89475;89476;89477;89478;89479;89480 89475 13 GMIELQK Unmodified 817.43677 0.4367746 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 19.875 20.384 2 0.0056361 7954 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 93.593 74.638 705810000 144180000 136890000 111400000 0 0 0 0 115910000 121010000 0 0 0 23440000 0 23271000 0 0 0 0 0 29708000 0 0 0 7806 1960 7610 145126;145127;145128;145129;145130;145131;145132;145133;145134 89481;89482;89483;89484 89481 4 GMINAVSFMVK Unmodified 1195.6093 0.60933601 986 P0AG51 rpmD 50S ribosomal protein L30 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.21 41.768 2 0.00019201 20136 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.52 102.84 2386000000 338240000 348610000 293330000 11190000 10374000 9712800 0 123240000 119320000 5586700 0 5189500 139210000 133550000 147320000 9434800 6057900 6831100 219140000 223440000 215230000 7461500 7625300 5909700 7807 986 7611 145135;145136;145137;145138;145139;145140;145141;145142;145143;145144;145145;145146;145147;145148;145149;145150;145151;145152;145153;145154;145155;145156 89485;89486;89487;89488;89489;89490;89491;89492;89493;89494;89495;89496;89497;89498;89499;89500 89497 16 GMKDLIK Unmodified 803.45751 0.45751004 1060 P10443 dnaE DNA polymerase III subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 3 3 3 1 1 22.813 22.372 2 0.011562 6581 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 94.407 25.018 79976000 0 0 0 11906000 0 0 0 1171200 0 4371900 3648600 1156900 0 0 0 23160000 14056000 15779000 0 0 0 2049100 0 2676600 7808 1060 7612 145157;145158;145159;145160;145161;145162;145163;145164;145165;145166;145167;145168;145169;145170;145171;145172;145173;145174;145175 89501;89502;89503;89504;89505;89506;89507 89506 7 GMLGFTGTYK Unmodified 1073.5216 0.52156686 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.095 30.756 2 0.00030192 14375 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 111.95 109.11 2468400000 70836000 62072000 56707000 0 0 0 435330000 451000000 468690000 0 0 0 72279000 58916000 63908000 0 0 0 256940000 237110000 234640000 0 0 0 7809 669 7613 145176;145177;145178;145179;145180;145181;145182;145183;145184;145185;145186;145187 89508;89509;89510;89511;89512;89513;89514;89515;89516;89517;89518;89519 89513 12 GMLGFTGTYK Oxidation (M) 1089.5165 0.51648149 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 2 1 1 1 1 1 1 25.464 24.399 2 0.0049893 10758 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 70.256 63.806 137710000 24333000 0 17554000 0 0 0 10392000 0 21209000 0 0 0 8322200 9352600 5631000 0 0 0 14304000 14633000 11978000 0 0 0 7810 669 7613 145188;145189;145190;145191;145192;145193;145194;145195;145196;145197;145198 89520;89521;89522 89521 369 1 GMLGSLLGGR Unmodified 959.52224 0.52223557 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.787 38.095 2 0.0014687 13458 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 84.568 78.786 112480000 15383000 14202000 16463000 4119100 4504100 3709300 14290000 8804900 8267100 0 0 0 3802000 3242200 3690400 0 0 0 5890700 6107100 0 0 0 0 7811 1528 7614 145199;145200;145201;145202;145203;145204;145205;145206;145207;145208;145209;145210;145211;145212 89523;89524;89525 89524 3 GMLNQQLK Unmodified 930.49569 0.49568646 818 P0ADX7 yhhA Uncharacterized protein YhhA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 17.564 18.255 2 0.0010256 6623 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.08 104.74 270530000 58002000 57049000 55252000 0 0 1358200 24819000 22141000 21281000 0 0 0 6789700 4408800 5620200 0 0 0 4013600 4410400 5388900 0 0 0 7812 818 7615 145213;145214;145215;145216;145217;145218;145219;145220;145221;145222;145223;145224;145225 89526;89527;89528;89529;89530;89531 89531 6 GMLPWQQLSGVEK Unmodified 1471.7493 0.74933497 1190 P21893 recJ Single-stranded-DNA-specific exonuclease RecJ yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 44.48 42.929 2 7.5501E-06 21449 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 123.86 116.58 89715000 7050500 0 0 0 0 0 7725000 11841000 10603000 0 0 0 8201200 5822600 7989100 0 0 0 11034000 10646000 8802500 0 0 0 7813 1190 7616 145226;145227;145228;145229;145230;145231;145232;145233;145234;145235 89532;89533;89534;89535;89536 89532 2 GMLSHWMVIK Unmodified 1200.6148 0.61475574 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 35.465 33.908 2;3 2.4973E-05 16681 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 147.29 123.13 761370000 3696700 3714500 0 0 764110 0 78882000 82518000 76739000 14969000 12834000 0 52267000 53310000 56786000 7292700 8600900 10610000 99136000 101750000 69441000 0 12382000 15681000 7814 723 7617 145236;145237;145238;145239;145240;145241;145242;145243;145244;145245;145246;145247;145248;145249;145250;145251;145252;145253;145254;145255;145256;145257;145258;145259;145260 89537;89538;89539;89540;89541;89542;89543;89544;89545;89546;89547;89548;89549;89550;89551;89552;89553;89554;89555 89544 19 GMLTQGFK Unmodified 880.44767 0.44767364 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.754 22.225 2 0.0031669 9425 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.401 79.737 584210000 12003000 11068000 9530300 0 0 0 55926000 70940000 73791000 0 0 0 67744000 59361000 53149000 0 0 0 54253000 53262000 63179000 0 0 0 7815 1323 7618 145261;145262;145263;145264;145265;145266;145267;145268;145269;145270;145271;145272 89556;89557;89558;89559;89560;89561 89558 4 GMLTTDVESYDK Unmodified 1357.6071 0.60714699 947 P0AFJ7 pitA Low-affinity inorganic phosphate transporter 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.122 27.555 2 1.9633E-10 12181 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 127.76 122.86 234770000 10288000 0 6847800 0 0 0 21653000 22705000 16978000 3817700 3034900 3022900 20014000 17776000 0 0 0 0 34332000 34009000 34673000 2309500 1808700 1495700 7816 947 7619 145273;145274;145275;145276;145277;145278;145279;145280;145281;145282;145283;145284;145285;145286;145287;145288;145289 89562;89563;89564;89565;89566;89567;89568;89569;89570;89571;89572;89573 89573 12 GMLTTDVESYDKLSLDQR Unmodified 2069.9939 0.99393493 947 P0AFJ7 pitA Low-affinity inorganic phosphate transporter 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 38.732 36.699 3 1.3195E-06 14549 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 91.317 87.476 17594000 0 0 0 1586700 1216400 0 0 0 0 0 2915900 4637600 0 0 0 0 0 0 0 0 0 0 3858700 3379100 7817 947 7620 145290;145291;145292;145293;145294;145295 89574 89574 1 GMLWIDGEPNR Unmodified 1286.6078 0.60775611 1242 P24203 yjiA Uncharacterized GTP-binding protein YjiA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.792 36.993 2 0.00027531 17296 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 94.85 78.968 405740000 26801000 0 23284000 0 0 0 73389000 58834000 46607000 748620 0 0 21601000 27374000 21972000 0 0 0 38153000 36653000 30322000 0 0 0 7818 1242 7621 145296;145297;145298;145299;145300;145301;145302;145303;145304;145305;145306;145307 89575;89576;89577;89578;89579;89580;89581;89582;89583 89581 9 GMMPPGFPGR Unmodified 1045.4837 0.48374157 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.045 31.518 2 0.0034833 12201 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 72.789 71.281 138530000 9763900 10925000 6405000 1471700 1461900 1568200 7057500 8022100 5442400 6545300 9163900 7395300 5309500 5649300 5665900 2355500 0 1340300 9190600 10728000 9966900 4602400 3518000 4977500 7819 1009 7622 145308;145309;145310;145311;145312;145313;145314;145315;145316;145317;145318;145319;145320;145321;145322;145323;145324;145325;145326;145327;145328;145329;145330 89584;89585;89586;89587;89588;89589 89585 6 GMNDYLPGETAIWQR Unmodified 1749.8145 0.81445442 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 45.805 44.34 2;3 8.4443E-09 21634 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.12 109.75 929100000 91841000 88425000 84039000 0 0 0 52780000 48525000 53434000 0 0 0 76484000 77585000 76058000 0 0 0 88618000 88479000 102840000 0 0 0 7820 1634 7623 145331;145332;145333;145334;145335;145336;145337;145338;145339;145340;145341;145342;145343;145344;145345;145346;145347;145348;145349;145350;145351;145352;145353;145354 89590;89591;89592;89593;89594;89595 89594 4 GMNLVGYDAMAIGNHEFDNPLTVLR Unmodified 2746.3207 0.32070557 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 53.677 52.236 3 3.1712E-15 25654 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 137.52 130.24 444930000 63902000 65172000 67490000 0 0 0 59607000 60603000 0 0 0 0 0 31950000 25765000 0 0 0 33067000 37372000 0 0 0 0 7821 154 7624 145355;145356;145357;145358;145359;145360;145361;145362;145363 89596;89597;89598;89599;89600 89598 5 GMNTAVGDEGGYAPNLGSNAEALAVIAEAVK Unmodified 2988.4499 0.44986507 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 1 3 2 3 1 2 3 2 2 3 2 54.658 53.216 2;3;4 1.9346E-68 26283 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 267.78 263.54 12706000000 956490000 828590000 735340000 10295000 6533300 0 1488400000 1297800000 1281600000 0 0 5181200 984540000 923820000 1054500000 0 0 0 1069400000 1129600000 934350000 0 0 0 7822 270 7625 145364;145365;145366;145367;145368;145369;145370;145371;145372;145373;145374;145375;145376;145377;145378;145379;145380;145381;145382;145383;145384;145385;145386;145387;145388;145389;145390;145391;145392;145393;145394;145395;145396;145397 89601;89602;89603;89604;89605;89606;89607;89608;89609;89610;89611;89612;89613;89614;89615;89616;89617;89618;89619;89620;89621;89622;89623;89624;89625;89626;89627 89606 27 GMNTEGVLPGPLR Unmodified 1339.6918 0.69182009 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.985 33.528 2 2.9962E-09 16441 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 214.83 211.58 1257600000 81305000 81310000 75258000 0 0 0 108690000 110210000 110870000 0 0 0 108940000 104400000 97985000 0 0 0 121100000 138740000 118750000 0 0 0 7823 1117 7626 145398;145399;145400;145401;145402;145403;145404;145405;145406;145407;145408;145409 89628;89629;89630;89631;89632;89633;89634;89635;89636;89637;89638;89639 89628 12 GMPGEVLQHFTR Unmodified 1370.6765 0.67650438 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 30.995 29.514 3 0.0082542 13849 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.463 49.074 29910000 12402000 0 0 0 412060 0 0 0 0 0 843490 1215900 3809900 3898400 3295400 0 0 0 0 4032800 0 0 0 0 7824 544 7627 145410;145411;145412;145413;145414;145415;145416;145417;145418 89640;89641 89640 2 GMPIATPVFDGAK Unmodified 1302.6642 0.66420836 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5 5 6 1 1 1 5 5 4 1 1 1 5 6 5 36.901 35.34 2;3 8.7614E-07 16665 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 137.98 131.67 45595000000 453180000 408780000 372990000 27196000 25501000 23366000 266380000 274970000 252880000 2642400000 2910000000 2764000000 335090000 282240000 315060000 7689000000 7072400000 7002100000 390020000 376410000 400400000 3613000000 3732500000 3964700000 7825 463 7628 145419;145420;145421;145422;145423;145424;145425;145426;145427;145428;145429;145430;145431;145432;145433;145434;145435;145436;145437;145438;145439;145440;145441;145442;145443;145444;145445;145446;145447;145448;145449;145450;145451;145452;145453;145454;145455;145456;145457;145458;145459;145460;145461;145462;145463;145464;145465;145466;145467;145468;145469;145470;145471;145472;145473;145474;145475;145476;145477;145478;145479 89642;89643;89644;89645;89646;89647;89648;89649;89650;89651;89652;89653;89654;89655;89656;89657;89658;89659;89660;89661;89662;89663;89664;89665;89666;89667;89668;89669;89670;89671;89672;89673;89674;89675;89676;89677;89678;89679;89680;89681;89682;89683;89684;89685;89686;89687;89688;89689;89690;89691;89692;89693;89694;89695;89696;89697;89698;89699;89700;89701;89702;89703;89704;89705;89706 89705 65 GMPIATPVFDGAK Oxidation (M) 1318.6591 0.65912298 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 4 4 4 1 1 7 7 6 1 5 3 5 33.007 31.746 2 7.8415E-07 9084 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 143.89 143.89 1554700000 5341200 0 0 897750 1077700 1072100 5631400 0 2938400 151270000 100600000 88139000 0 1991200 2081200 314190000 206070000 205200000 0 3838900 0 177420000 111810000 175120000 7826 463 7628 145480;145481;145482;145483;145484;145485;145486;145487;145488;145489;145490;145491;145492;145493;145494;145495;145496;145497;145498;145499;145500;145501;145502;145503;145504;145505;145506;145507;145508;145509;145510;145511;145512;145513;145514;145515;145516;145517;145518;145519;145520;145521;145522;145523;145524;145525;145526;145527;145528;145529;145530;145531;145532;145533;145534 89707;89708;89709;89710;89711;89712;89713;89714;89715;89716;89717;89718;89719;89720;89721;89722;89723;89724;89725;89726;89727;89728;89729;89730;89731;89732;89733;89734;89735;89736;89737;89738;89739;89740;89741;89742;89743;89744;89745;89746;89747;89748;89749;89750;89751;89752;89753;89754;89755;89756 89715 265 46 GMPLYEHIAELNGTPGK Unmodified 1825.9033 0.90326943 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 35.239 33.675 2;3 1.4194E-31 16478 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 282.91 274.81 7234300000 498030000 455730000 392970000 1554200 10211000 10819000 840710000 765050000 862020000 8745300 9902100 11513000 529190000 497900000 513450000 4815900 4413000 3710400 580060000 621870000 601920000 4787500 0 4939200 7827 270 7629 145535;145536;145537;145538;145539;145540;145541;145542;145543;145544;145545;145546;145547;145548;145549;145550;145551;145552;145553;145554;145555;145556;145557;145558;145559;145560;145561;145562;145563;145564;145565;145566;145567;145568;145569;145570;145571;145572;145573;145574 89757;89758;89759;89760;89761;89762;89763;89764;89765;89766;89767;89768;89769;89770;89771;89772;89773;89774;89775;89776;89777;89778;89779;89780;89781;89782;89783;89784;89785 89761 29 GMPLYEHIAELNGTPGK Oxidation (M) 1841.8982 0.89818405 270 P0A6P9 eno Enolase yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 30.196 28.856 3 0.00082435 13967 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.537 53.258 68118000 8354300 6002700 2957900 0 0 0 19765000 15581000 0 0 0 0 3006900 0 4012100 0 0 0 0 8438400 0 0 0 0 7828 270 7629 145575;145576;145577;145578;145579;145580;145581;145582 89786;89787 89786 125 2 GMPQIEVTFDIDADGILHVSAK Unmodified 2355.178 0.17804731 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 1 1 2 2 2 1 2 1 2 2 2 54.56 53.088 3 0.00014755 26476 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.316 69.554 460770000 50873000 27515000 22619000 0 0 0 46900000 48007000 45530000 0 0 0 26031000 38809000 21358000 0 0 0 47553000 46967000 38603000 0 0 0 7829 293 7630 145583;145584;145585;145586;145587;145588;145589;145590;145591;145592;145593;145594;145595;145596;145597;145598;145599;145600;145601;145602 89788;89789;89790;89791 89788 2 GMPVDIHPEEGVPAVELILCR Unmodified 2330.1763 0.17627317 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.081 50.834 3 0.0049092 23797 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 45.413 42.315 217600000 20797000 20830000 14547000 0 0 0 14635000 15990000 18012000 0 0 0 16623000 13760000 19127000 0 0 0 21599000 21960000 19719000 0 0 0 7830 1164 7631 145603;145604;145605;145606;145607;145608;145609;145610;145611;145612;145613;145614 89792;89793 89793 1 GMQLYFER Unmodified 1042.4906 0.49060109 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.834 31.358 2 0.00015532 14139 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 126.67 107.94 1239100000 156090000 134720000 129790000 596440 0 615430 121070000 112910000 114460000 0 0 0 80511000 84086000 0 0 0 0 98651000 103970000 101620000 0 0 0 7831 94 7632 145615;145616;145617;145618;145619;145620;145621;145622;145623;145624;145625;145626;145627;145628 89794;89795;89796;89797;89798;89799;89800;89801;89802;89803;89804;89805 89805 12 GMSGLDTLNALR Unmodified 1246.634 0.63397086 1380 P31802 narP Nitrate/nitrite response regulator protein NarP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.502 36.809 2 1.4578E-12 17821 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 200.86 194.55 455590000 44003000 38422000 29307000 1114000 1266600 1202200 34470000 38183000 44872000 6344900 5811400 6302100 33068000 34926000 35508000 2582700 0 435470 35221000 26486000 29740000 2161500 1523600 2635900 7832 1380 7633 145629;145630;145631;145632;145633;145634;145635;145636;145637;145638;145639;145640;145641;145642;145643;145644;145645;145646;145647;145648;145649;145650;145651 89806;89807;89808;89809;89810;89811;89812;89813;89814;89815;89816 89809 9 GMSVTEVER Unmodified 1006.4753 0.47534495 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.073 17.821 2 0.00015814 6414 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.22 120.23 119150000 13895000 14775000 11424000 1580500 1927900 1843900 10152000 9414500 10606000 0 0 0 7475500 7529300 8264600 0 0 0 10294000 0 9971300 0 0 0 7833 1083 7634 145652;145653;145654;145655;145656;145657;145658;145659;145660;145661;145662;145663;145664;145665 89817;89818;89819;89820;89821;89822;89823;89824;89825 89821 9 GMTETVAR Unmodified 863.4171 0.41710179 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 12.051 12.906 2 0.0027995 3603 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.473 78.808 2273300000 211270000 0 187870000 0 0 0 0 394570000 289920000 0 0 0 324490000 289360000 271810000 0 0 0 303990000 0 0 0 0 0 7834 539 7635 145666;145667;145668;145669;145670;145671;145672;145673;145674 89826;89827;89828;89829;89830;89831;89832;89833 89830 4 GMTLFLPR Unmodified 933.51061 0.51060825 1290 P27129 rfaJ Lipopolysaccharide 1,2-glucosyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.611 38.605 2 0.0035756 19262 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.986 79.264 51839000 0 0 0 0 624420 799360 5228200 4366200 5999000 2089800 1756000 2175400 4941300 0 0 0 0 0 6212500 7539600 6942400 1644300 0 1520300 7835 1290 7636 145675;145676;145677;145678;145679;145680;145681;145682;145683;145684;145685;145686;145687;145688;145689;145690 89834;89835;89836;89837;89838;89839;89840 89834 7 GMVALAR Unmodified 716.40033 0.40032952 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.669 18.192 2 0.0965 5072 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 54.537 39.316 1014200000 112110000 124110000 86670000 7162300 5302900 5466500 87479000 92936000 95489000 0 5178100 0 64878000 71577000 68714000 10772000 10604000 12692000 0 76976000 72315000 0 3766800 0 7836 1878 7637 145691;145692;145693;145694;145695;145696;145697;145698;145699;145700;145701;145702;145703;145704;145705;145706;145707;145708;145709 89841;89842;89843;89844;89845;89846;89847 89841 7 GMVALAR Oxidation (M) 732.39524 0.39524414 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.473 12.046 2 0.1455 3153 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 42.773 42.773 1623600000 9722400 8022200 8160600 0 0 0 142630000 167350000 159160000 0 5008800 4555500 168080000 167800000 153330000 6186800 6857800 6975400 212550000 182290000 204370000 5441300 5105200 0 7837 1878 7637 145710;145711;145712;145713;145714;145715;145716;145717;145718;145719;145720;145721;145722;145723;145724;145725;145726;145727;145728 89848;89849;89850 89848 0 GMVFYTNLGSR Unmodified 1243.6019 0.60194245 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By MS/MS 1 35.225 33.824 2 0.035377 16189 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 55.908 42.454 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7838 944 7638 145729 89851 89851 1 GMVGMAAR Unmodified 791.37821 0.37821387 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 14.631 15.43 2 0.00076011 5096 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.32 117.3 456880000 93618000 91648000 91597000 877330 0 946720 13197000 13169000 0 0 0 0 18895000 18298000 15646000 0 0 0 31641000 34342000 33003000 0 0 0 7839 34 7639 145730;145731;145732;145733;145734;145735;145736;145737;145738;145739;145740;145741;145742 89852;89853;89854;89855;89856;89857;89858;89859;89860;89861;89862 89855 10 GMVGSVLMQR Unmodified 1076.5471 0.54707011 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.497 28.201 2 0.0030647 12523 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.302 74.666 2113100000 312360000 287800000 261370000 1448600 1542700 1347800 171680000 161460000 150520000 0 0 0 112450000 116200000 103970000 0 0 0 142530000 153840000 134520000 0 0 0 7840 549 7640 145743;145744;145745;145746;145747;145748;145749;145750;145751;145752;145753;145754;145755;145756;145757 89863;89864;89865;89866;89867;89868;89869;89870;89871;89872 89872 0 GMVGSVLMQR Oxidation (M) 1092.542 0.54198473 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 1 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 2 1 2 1 2 1 22.613 22.255 2 0.020007 9750 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 62.546 50.019 37998000 8470700 1762100 5708100 0 0 0 5392700 7579500 4506800 0 0 0 3353200 0 1224600 0 0 0 0 0 0 0 0 0 7841 549 7640 145758;145759;145760;145761;145762;145763;145764;145765;145766;145767;145768;145769 89873;89874;89875 89873 338 1 GMVIGTTGFDEAGK Unmodified 1381.6548 0.65476588 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.396 31.056 2 2.4915E-08 15018 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.94 146.79 887060000 84296000 72400000 83814000 0 0 0 72530000 73127000 68370000 0 0 0 63322000 63858000 64769000 0 0 0 73575000 88935000 78067000 0 0 0 7842 85 7641 145770;145771;145772;145773;145774;145775;145776;145777;145778;145779;145780;145781 89876;89877;89878;89879;89880;89881;89882;89883 89876 8 GMVLTGGGALLR Unmodified 1143.6434 0.64341333 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 35.671 34.134 2 4.298E-07 16422 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.07 141.69 2280500000 159750000 141430000 149560000 38870000 35300000 35511000 130840000 127670000 136310000 79854000 108400000 80279000 96269000 105480000 106040000 30539000 18137000 20041000 188050000 166760000 172790000 50081000 54108000 48467000 7843 564 7642 145782;145783;145784;145785;145786;145787;145788;145789;145790;145791;145792;145793;145794;145795;145796;145797;145798;145799;145800;145801;145802;145803;145804;145805;145806;145807;145808;145809;145810 89884;89885;89886;89887;89888;89889;89890;89891;89892;89893;89894;89895;89896;89897;89898;89899;89900;89901;89902;89903;89904;89905;89906 89898 23 GMWAMPDLMADMYSQK Unmodified 1873.7871 0.78711874 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS 1 54.694 53.336 2 5.3308E-07 26133 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.87 96.762 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7844 1465 7643 145811 89907 89907 1 GMWQQSEGK Unmodified 1049.46 0.46002924 476 P0A901 blc Outer membrane lipoprotein Blc yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.832 15.426 2 0.0025982 4340 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 84.568 84.568 81805000 5216200 4608900 5485700 1512400 1634300 0 14397000 12538000 10401000 3497300 3854800 4002200 2606200 3221600 0 0 0 0 3421800 2791600 0 1315800 0 1300400 7845 476 7644 145812;145813;145814;145815;145816;145817;145818;145819;145820;145821;145822;145823;145824;145825;145826;145827;145828 89908;89909;89910;89911 89908 4 GMYVTAQK Unmodified 896.44259 0.44258826 1660 P63235 gadC Probable glutamate/gamma-aminobutyrate antiporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.238 14.008 2 0.00047619 4260 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.89 123.24 574020000 38106000 36303000 36051000 6209000 7118300 7014800 99603000 93742000 91683000 44312000 44969000 48816000 4284700 4367900 4319600 0 0 0 0 3259000 3862000 0 0 0 7846 1660 7645 145829;145830;145831;145832;145833;145834;145835;145836;145837;145838;145839;145840;145841;145842;145843;145844;145845 89912;89913;89914;89915;89916;89917;89918;89919;89920;89921;89922;89923 89923 12 GNADFAIATEALHLYEDLVMLPCYHWNR Unmodified 3318.559 0.55903836 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 55.637 55.692 4 6.8805E-08 20930 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 105.24 103.21 496200000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 130760000 165780000 199660000 0 0 0 0 0 0 7847 515 7646 145846;145847;145848 89924;89925;89926 89925 3 GNAFTLVLR Unmodified 989.56581 0.56581494 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 38.575 36.882 2 4.1169E-05 17931 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 151.29 135.14 110960000 11023000 10820000 0 0 0 0 10633000 7464000 10198000 0 0 0 6269500 8049900 6325600 0 0 0 16049000 12240000 11883000 0 0 0 7848 1979 7647 145849;145850;145851;145852;145853;145854;145855;145856;145857;145858;145859 89927;89928;89929;89930;89931;89932;89933;89934 89930 7 GNAMEVGPLAR Unmodified 1113.5601 0.56007764 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 25.986 24.62 2 8.8048E-05 11211 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.13 112.55 143230000 0 0 0 884460 0 638450 44050000 40023000 39651000 4174100 5342300 4174400 0 0 0 1801500 0 0 0 0 0 2489700 0 0 7849 722 7648 145860;145861;145862;145863;145864;145865;145866;145867;145868;145869 89935;89936;89937 89936 3 GNANVVFFDGITAGEK Unmodified 1637.8049 0.80493559 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 42.438 40.898 2 0.00010635 19865 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.39 101.41 75299000 27267000 26383000 21649000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7850 774 7649 145870;145871;145872 89938 89938 1 GNARPSVVVADSGHLTQLR Unmodified 1976.0552 0.055170474 922 P0AF98 lptF Lipopolysaccharide export system permease protein LptF yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 2 2 2 2 2 2 1 1 1 1 2 1 21.906 21.68 3;4 0.0019508 6536 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 59.512 56.225 67960000 0 2613100 0 4919600 3905700 5314000 0 0 0 12673000 9056100 7496600 3785300 0 0 0 0 0 0 3137400 2987600 3120300 4941200 4009900 7851 922 7650 145873;145874;145875;145876;145877;145878;145879;145880;145881;145882;145883;145884;145885;145886;145887;145888;145889;145890;145891;145892 89939;89940;89941;89942 89942 4 GNASEDARPIVLVGK Unmodified 1524.826 0.82600539 1725 P68767 pepA Cytosol aminopeptidase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 2 1 21.768 21.745 2;3 0.00017802 8741 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.011 84.776 125610000 26473000 20458000 20853000 0 0 0 8159600 6936500 7521900 0 950430 0 4376500 0 0 0 0 0 8039300 11021000 10822000 0 0 0 7852 1725 7651 145893;145894;145895;145896;145897;145898;145899;145900;145901;145902;145903;145904;145905;145906;145907 89943;89944;89945 89945 3 GNASVLPADNTLATVTFK Unmodified 1817.9523 0.95232811 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 42.915 41.263 2 2.8277E-06 20556 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.42 119.2 126710000 0 0 0 0 0 0 21247000 18699000 16305000 0 0 0 12448000 12235000 12151000 0 0 0 11415000 11811000 10403000 0 0 0 7853 1836 7652 145908;145909;145910;145911;145912;145913;145914;145915;145916 89946;89947;89948;89949;89950;89951;89952;89953 89946 8 GNATTPQVADAICK Unmodified 1444.698 0.69802768 1843 P76251 dmlA D-malate dehydrogenase [decarboxylating] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.601 21.657 2 1.91E-05 8742 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.353 88.666 75567000 12822000 9583800 9190500 0 0 0 10642000 13876000 9357000 0 0 0 3643800 2949400 0 0 0 0 0 0 3502800 0 0 0 7854 1843 7653 145917;145918;145919;145920;145921;145922;145923;145924;145925 89954;89955;89956 89955 3 GNAVGVELTPLEK Unmodified 1325.7191 0.7190807 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 32.944 31.705 2 0.00034368 15106 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 82.171 71.341 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7855 1909 7654 145926;145927;145928 89957;89958;89959 89957 3 GNCDSEVDQMLLHFPITAPWQQVLLEK Unmodified 3167.542 0.54199132 1710 P67095 yfcE Phosphodiesterase YfcE yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.287 53.821 3 1.3244E-05 26832 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 78.583 76.578 231730000 38348000 37400000 34196000 0 0 0 12774000 10682000 10074000 0 0 0 15709000 19386000 18151000 0 0 0 0 17551000 17460000 0 0 0 7856 1710 7655 145929;145930;145931;145932;145933;145934;145935;145936;145937;145938;145939 89960 89960 1 GNCTPNAEFNIAADPEAAACVFR Unmodified 2494.1005 0.10054204 1200 P22564 rihC Non-specific ribonucleoside hydrolase RihC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 2 2 2 2 1 48.256 46.94 2;3 1.2864E-21 22984 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.29 162.57 178950000 36664000 31267000 34453000 0 0 0 11726000 4008800 7790000 0 0 0 8667100 7444400 9459600 0 0 0 10503000 10060000 6910000 0 0 0 7857 1200 7656 145940;145941;145942;145943;145944;145945;145946;145947;145948;145949;145950;145951;145952;145953;145954;145955;145956;145957;145958;145959;145960;145961 89961;89962;89963;89964;89965;89966 89961 6 GNDFFQQIQLTQCTR Unmodified 1854.8683 0.86828091 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 43.832 42.31 2;3 1.9892E-20 20706 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 269.04 265.72 489980000 90037000 69578000 60579000 0 0 0 25871000 20954000 21987000 0 0 0 26118000 17360000 18393000 0 0 0 46229000 45364000 47514000 0 0 0 7858 696 7657 145962;145963;145964;145965;145966;145967;145968;145969;145970;145971;145972;145973;145974;145975;145976;145977;145978;145979;145980;145981;145982;145983;145984 89967;89968;89969;89970;89971;89972;89973;89974;89975;89976;89977;89978;89979;89980;89981 89975 13 GNDFFQQIVNK Unmodified 1308.6463 0.64625011 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.283 37.474 2 0.0017547 18694 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.89 110.76 154810000 0 0 0 0 0 0 22833000 28697000 37444000 0 0 0 24073000 22476000 19286000 0 0 0 0 0 0 0 0 0 7859 1097 7658 145985;145986;145987;145988;145989;145990 89982;89983;89984;89985;89986;89987 89982 0 GNDGIAAFVQR Unmodified 1146.5782 0.57817054 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 31.206 29.695 2;3 3.879E-11 14081 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 201.07 192.89 3895000000 21388000 24266000 17678000 4028700 4271400 3736400 449710000 409780000 461400000 7387200 6873200 7664500 375470000 392520000 386730000 6497900 0 0 435610000 423400000 422340000 11419000 10193000 12597000 7860 994 7659 145991;145992;145993;145994;145995;145996;145997;145998;145999;146000;146001;146002;146003;146004;146005;146006;146007;146008;146009;146010;146011;146012;146013;146014;146015;146016;146017;146018;146019;146020;146021;146022;146023;146024 89988;89989;89990;89991;89992;89993;89994;89995;89996;89997;89998;89999;90000;90001;90002;90003;90004;90005;90006;90007;90008 89994 19 GNDMISHLYQPMSPSVLNLIK Unmodified 2356.1919 0.19192323 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 52.134 50.989 2;3 1.965E-52 25297 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 306.53 301.98 7814500000 332220000 321770000 304990000 8308500 9280800 5400600 613540000 653000000 691460000 0 0 19549000 665030000 787540000 855520000 11047000 15666000 13968000 891560000 819660000 779200000 7153100 8658000 0 7861 192 7660 146025;146026;146027;146028;146029;146030;146031;146032;146033;146034;146035;146036;146037;146038;146039;146040;146041;146042;146043;146044;146045;146046;146047;146048;146049;146050;146051;146052;146053;146054;146055;146056;146057 90009;90010;90011;90012;90013;90014;90015;90016;90017;90018;90019;90020;90021;90022;90023;90024;90025;90026;90027;90028;90029;90030 90011 22 GNDMISHLYQPMSPSVLNLIK Oxidation (M) 2372.1868 0.18683785 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 1 0 By matching By matching By MS/MS By matching 1 1 1 1 49.189 47.937 3 0.0099257 22368 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 43.198 41.771 35778000 0 5933500 5272900 0 0 0 0 0 0 0 0 0 0 0 8586300 0 0 0 0 0 15985000 0 0 0 7862 192 7660 146058;146059;146060;146061 90031 90031 56 1 GNDTDTYALK Unmodified 1096.5037 0.50366819 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 15.942 16.414 2 0.00025665 5674 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.05 109.6 318170000 107250000 113630000 95998000 0 0 0 0 0 0 0 635760 649090 0 0 0 0 0 0 0 0 0 0 0 0 7863 96 7661 146062;146063;146064;146065;146066 90032;90033;90034 90034 3 GNDYSILNTVSENLTYKPER Unmodified 2312.1285 0.12845458 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.814 42.25 3 4.1586E-18 20869 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159.7 155.59 319670000 41021000 35956000 37611000 5128500 3386700 4993600 29398000 27189000 26339000 0 0 0 16696000 13803000 12626000 0 0 0 19604000 21870000 21562000 0 2488600 0 7864 235 7662 146067;146068;146069;146070;146071;146072;146073;146074;146075;146076;146077;146078;146079;146080;146081;146082 90035;90036;90037;90038;90039;90040;90041;90042;90043 90037 9 GNEDLLK Unmodified 787.40758 0.40758296 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 15.373 16.161 2 0.064661 5560 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 60.358 32.185 615570000 69060000 73000000 67130000 0 0 0 65535000 73670000 72337000 0 0 0 42955000 32834000 0 0 0 0 41523000 38474000 39051000 0 0 0 7865 874 7663 146083;146084;146085;146086;146087;146088;146089;146090;146091;146092;146093 90044;90045 90044 2 GNESDVYSSEIPAEFQK Unmodified 1898.8534 0.85340193 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 2 1 2 2 2 2 2 2 35.848 34.275 2;3 2.453E-24 16523 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 250.81 249.37 1483500000 136770000 160410000 126660000 649670 0 773290 116400000 108850000 109290000 0 0 1052900 105820000 93794000 90739000 0 0 0 150680000 141860000 139740000 0 0 0 7866 158 7664 146094;146095;146096;146097;146098;146099;146100;146101;146102;146103;146104;146105;146106;146107;146108;146109;146110;146111;146112;146113;146114;146115;146116;146117;146118;146119 90046;90047;90048;90049;90050;90051;90052;90053;90054;90055;90056;90057;90058;90059;90060 90054 15 GNFDLEGLER Unmodified 1148.5462 0.54620171 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 3 2 1 1 1 1 1 2 1 1 1 2 2 1 1 1 1 35.424 33.907 2 4.5836E-07 11616 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 175.51 168.87 23333000000 3920900000 3372200000 3221600000 31966000 28878000 33095000 2115200000 2045800000 2049000000 6454600 0 4097900 1047900000 1089900000 987480000 6903700 4457700 4694900 1131100000 1202700000 1007300000 6306200 6976900 7913500 7867 397 7665 146120;146121;146122;146123;146124;146125;146126;146127;146128;146129;146130;146131;146132;146133;146134;146135;146136;146137;146138;146139;146140;146141;146142;146143;146144;146145;146146;146147;146148;146149;146150;146151;146152 90061;90062;90063;90064;90065;90066;90067;90068;90069;90070;90071;90072;90073;90074;90075;90076;90077;90078;90079;90080;90081;90082;90083;90084;90085;90086 90077 23 GNGFATYR Unmodified 884.41407 0.41406533 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.446 15.982 2 0.00060799 4518 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 130.77 130.77 162060000 4381600 3993300 4178900 8057100 8348200 7644700 0 2766600 3423100 21403000 18818000 19225000 2598900 0 3304700 6164700 4541500 4040200 4814400 4245800 4631600 8547000 9186300 7743700 7868 144 7666 146153;146154;146155;146156;146157;146158;146159;146160;146161;146162;146163;146164;146165;146166;146167;146168;146169;146170;146171;146172;146173;146174 90087;90088;90089;90090;90091;90092;90093;90094;90095;90096;90097 90090 10 GNGGCGCH Unmodified 817.25956 0.25955529 532 P0A9K9 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 3.1986 4.1215 2 0.032643 564 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 63.443 63.443 6322700 0 0 0 0 0 0 0 0 0 0 0 0 629220 321250 0 0 0 0 1656200 1747900 1968200 0 0 0 7869 532 7667 146175;146176;146177;146178;146179 90098;90099 90099 2 GNGSTEDLTAR Unmodified 1119.5156 0.51562986 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 12.348 13.016 2 0.00010056 3078 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 119.75 110.53 99871000 8625200 0 0 6905600 4582200 4234600 0 5047800 0 26391000 22599000 21485000 0 0 0 0 0 0 0 0 0 0 0 0 7870 982 7668 146180;146181;146182;146183;146184;146185;146186;146187 90100;90101;90102;90103;90104;90105 90101 5 GNHASVIVPVEVEAAVA Unmodified 1660.8784 0.87843489 494 P0A968 cspD Cold shock-like protein CspD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.805 40.2 2 2.2051E-06 19650 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.5 94.036 524500000 0 9790500 0 369830 0 0 55653000 48541000 55091000 1891700 1625900 1093100 0 87919000 95220000 8591800 6024100 6519700 43964000 48885000 51000000 0 1131700 1190200 7871 494 7669 146188;146189;146190;146191;146192;146193;146194;146195;146196;146197;146198;146199;146200;146201;146202;146203;146204;146205 90106;90107;90108;90109;90110 90110 2 GNHAWTLPEESSR Unmodified 1482.6852 0.68515481 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.447 20.862 3 8.9824E-05 8041 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.288 83.076 112990000 15349000 20345000 16366000 0 0 0 11888000 9238300 10836000 0 0 0 5332500 4142100 3685400 0 0 0 4535200 5162600 6109000 0 0 0 7872 1934 7670 146206;146207;146208;146209;146210;146211;146212;146213;146214;146215;146216;146217 90111;90112 90112 2 GNHAWTLPEESSRPIIK Unmodified 1934.001 0.0010096381 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 2 2 2 2 2 1 2 25.223 24.191 3;4 9.8063E-07 10266 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 100.43 98.282 529950000 73598000 70849000 56307000 0 0 0 32114000 78544000 83104000 0 0 0 20890000 21898000 18346000 0 0 0 29915000 14793000 29595000 0 0 0 7873 1934 7671 146218;146219;146220;146221;146222;146223;146224;146225;146226;146227;146228;146229;146230;146231;146232;146233;146234;146235;146236 90113;90114;90115;90116;90117;90118;90119;90120 90118 7 GNHEVMMR Unmodified 972.42695 0.42695497 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.974 11.776 2 0.12743 3006 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 52.403 48.656 211600000 57579000 62548000 55836000 3849400 0 0 8196600 7083000 9258300 0 0 0 0 2294000 0 0 0 0 0 4957500 0 0 0 0 7874 1254 7672 146237;146238;146239;146240;146241;146242;146243;146244;146245 90121 90121 0 GNIATTETLLIR Unmodified 1300.7351 0.73506511 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.634 34.078 2 8.2923E-05 15571 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 98.943 87.349 125970000 7161500 3971300 6517700 0 0 0 13497000 10362000 11555000 0 0 0 11393000 10781000 11292000 0 0 0 16004000 13050000 10385000 0 0 0 7875 509 7673 146246;146247;146248;146249;146250;146251;146252;146253;146254;146255;146256;146257 90122;90123;90124;90125;90126 90126 2 GNIATVSHCITR Unmodified 1327.6667 0.66666797 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 15.046 15.551 2;3 3.3615E-23 4310 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 231.38 227.81 5602300000 0 0 0 3640200 3548000 1598700 564150000 556120000 517000000 229570000 215270000 157630000 376490000 382390000 310990000 38333000 33235000 28218000 602990000 627590000 596060000 125410000 122280000 109830000 7876 1442 7674 146258;146259;146260;146261;146262;146263;146264;146265;146266;146267;146268;146269;146270;146271;146272;146273;146274;146275;146276;146277;146278;146279;146280;146281;146282;146283;146284;146285;146286;146287;146288;146289;146290;146291;146292;146293;146294;146295;146296;146297;146298 90127;90128;90129;90130;90131;90132;90133;90134;90135;90136;90137;90138;90139;90140;90141;90142;90143;90144;90145;90146;90147;90148;90149;90150;90151;90152;90153;90154;90155;90156;90157;90158;90159;90160;90161;90162 90138 36 GNIGYIGPVPER Unmodified 1270.667 0.66698555 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 29.72 28.372 2 1.4641E-11 12518 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 180.67 175.73 2156200000 221940000 199080000 191260000 0 0 0 211260000 220640000 219540000 0 0 797620 114830000 122130000 125740000 0 0 0 172940000 189150000 166900000 0 0 0 7877 1170 7675 146299;146300;146301;146302;146303;146304;146305;146306;146307;146308;146309;146310;146311 90163;90164;90165;90166;90167;90168;90169;90170;90171;90172;90173;90174 90174 12 GNIQFDR Unmodified 848.41407 0.41406533 1242 P24203 yjiA Uncharacterized GTP-binding protein YjiA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.385 16.193 2 0.0028071 5477 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.61 90.975 343110000 29348000 23203000 26773000 0 0 0 31479000 33097000 31296000 0 0 0 28003000 21779000 23208000 0 0 0 29523000 34662000 30741000 0 0 0 7878 1242 7676 146312;146313;146314;146315;146316;146317;146318;146319;146320;146321;146322;146323 90175;90176;90177;90178 90177 4 GNKFVGAVSIDSLK Unmodified 1433.7878 0.78782897 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 29.968 28.206 3 0.076529 9539 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 33.842 29.498 14111000 0 0 0 3220900 3113900 2621300 0 0 0 2062500 0 0 0 0 0 0 0 0 0 0 0 3092500 0 0 7879 1094 7677 146324;146325;146326;146327;146328 90179 90179 1 GNLAAGGR Unmodified 714.37729 0.37728589 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.431 11.259 2 0.15783 2485 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 47.743 16.44 605190000 90144000 72401000 0 0 0 0 0 76490000 0 0 0 0 59874000 59729000 0 0 0 0 88749000 84717000 73083000 0 0 0 7880 90 7678 146329;146330;146331;146332;146333;146334;146335;146336 90180 90180 0 GNLDANNYR Unmodified 1035.4734 0.47337112 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 13.179 13.816 2 0.00077202 4227 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.64 98.941 354120000 22078000 19383000 0 0 0 0 103910000 110740000 97333000 0 0 685310 0 0 0 0 0 0 0 0 0 0 0 0 7881 1265 7679 146337;146338;146339;146340;146341;146342 90181;90182;90183;90184 90184 1 GNLISHK Unmodified 767.42899 0.42898711 1361 P31130 ydeI Uncharacterized protein YdeI yes yes 0 0 0 By MS/MS By matching 1 1 10.534 11.256 2 0.1431 2611 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 46.016 27.881 276440000 0 114710000 161730000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7882 1361 7680 146343;146344 90185 90185 1 GNNALGATALAQVYR Unmodified 1517.795 0.79503961 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.66 34.103 2 0.00045674 16164 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 74.76 74.654 271920000 69267000 68733000 55588000 0 0 0 5698700 4671900 4554700 0 0 0 7784900 8381900 8471200 0 0 0 9288800 12488000 16996000 0 0 0 7883 1107 7681 146345;146346;146347;146348;146349;146350;146351;146352;146353;146354;146355;146356 90186 90186 0 GNNLKDVTLTLPVGLFTCITGVSGSGK Unmodified 2747.4528 0.4527656 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 54.281 54.336 3 1.1179E-22 21190 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 168.06 165.3 202510000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47748000 61938000 92825000 0 0 0 0 0 0 7884 222 7682 146357;146358;146359 90187;90188;90189 90187 3 GNNLTVSADLYK Unmodified 1293.6565 0.65648044 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.614 27.152 2 2.8557E-05 12404 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.23 106.28 312400000 39059000 36227000 30685000 5399200 6065200 4370800 14419000 17789000 15102000 6898100 7465100 7428100 11670000 15721000 14212000 0 0 0 21326000 22260000 21146000 5159300 4765700 5228700 7885 1829 7683 146360;146361;146362;146363;146364;146365;146366;146367;146368;146369;146370;146371;146372;146373;146374;146375;146376;146377;146378;146379;146380 90190;90191;90192;90193;90194;90195;90196;90197 90193 8 GNNQPDIQK Unmodified 1012.4938 0.49377221 1462 P37194 slp Outer membrane protein slp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 11.394 11.55 2 3.0058E-06 2417 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 148.04 141.59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7886 1462 7684 146381;146382;146383 90198;90199;90200 90198 3 GNNVVVLGTQWGDEGK Unmodified 1671.8216 0.82164829 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 36.684 35.006 2;3 1.0477E-18 16118 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 244.95 241.72 3805400000 384740000 326570000 345110000 0 0 0 325230000 284860000 298760000 0 0 0 291450000 279490000 261060000 0 0 0 344120000 333400000 326760000 1100000 1574400 1183900 7887 333 7685 146384;146385;146386;146387;146388;146389;146390;146391;146392;146393;146394;146395;146396;146397;146398;146399;146400;146401;146402;146403;146404;146405;146406;146407;146408;146409;146410 90201;90202;90203;90204;90205;90206;90207;90208;90209;90210;90211;90212;90213;90214;90215;90216 90216 16 GNPCVEAVLEK Unmodified 1214.5965 0.59652272 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.798 24.71 2 0.00018688 11374 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 106.18 101.21 717320000 50146000 47664000 44324000 0 0 0 56781000 61124000 0 0 0 1607300 72868000 74727000 76368000 0 0 0 76848000 80004000 74858000 0 0 0 7888 1500 7686 146411;146412;146413;146414;146415;146416;146417;146418;146419;146420;146421;146422 90217;90218;90219;90220;90221;90222;90223;90224;90225;90226;90227 90218 11 GNPSHTNLVQVEK Unmodified 1421.7263 0.72629134 1152 P18775 dmsA Dimethyl sulfoxide reductase DmsA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 13.044 13.799 2 4.0383E-05 4156 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.215 51.211 17690000 0 0 0 0 0 0 3547600 4773900 0 0 0 1330200 3532400 4505500 0 0 0 0 0 0 0 0 0 0 7889 1152 7687 146423;146424;146425;146426;146427 90228 90228 1 GNPTVEAEVHLEGGFVGMAAAPSGASTGSR Unmodified 2855.3508 0.35081973 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 11 7 2 3 3 7 8 7 1 2 8 10 5 8 7 9 1 45.815 44.289 2;3 5.0836E-94 19296 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 379.73 369.98 3537700000 198240000 261270000 175480000 23695000 16689000 13720000 466770000 424910000 416650000 0 4572100 3608700 117490000 303850000 215000000 0 0 0 336210000 243290000 312770000 0 3484500 0 7890 270 7688 146428;146429;146430;146431;146432;146433;146434;146435;146436;146437;146438;146439;146440;146441;146442;146443;146444;146445;146446;146447;146448;146449;146450;146451;146452;146453;146454;146455;146456;146457;146458;146459;146460;146461;146462;146463;146464;146465;146466;146467;146468;146469;146470;146471;146472;146473;146474;146475;146476;146477;146478;146479;146480;146481;146482;146483;146484;146485;146486;146487;146488;146489;146490;146491;146492;146493;146494;146495;146496;146497;146498;146499;146500;146501;146502;146503;146504;146505;146506;146507;146508;146509;146510;146511;146512;146513;146514;146515;146516;146517;146518;146519;146520;146521;146522;146523;146524;146525;146526;146527;146528;146529;146530;146531;146532;146533;146534 90229;90230;90231;90232;90233;90234;90235;90236;90237;90238;90239;90240;90241;90242;90243;90244;90245;90246;90247;90248;90249;90250;90251;90252;90253;90254;90255;90256;90257;90258;90259;90260;90261;90262;90263;90264;90265;90266;90267;90268;90269;90270;90271;90272;90273;90274;90275;90276;90277;90278;90279;90280;90281;90282;90283;90284;90285;90286;90287;90288;90289;90290;90291;90292;90293;90294;90295;90296;90297;90298;90299;90300;90301;90302;90303;90304;90305;90306;90307;90308;90309;90310;90311;90312;90313;90314;90315;90316;90317;90318;90319;90320;90321;90322;90323;90324;90325;90326;90327;90328;90329;90330;90331;90332;90333;90334;90335;90336;90337;90338;90339;90340;90341;90342;90343;90344;90345;90346 90259 116 GNSALVDECVAFYEEHFPDR Unmodified 2354.0274 0.027360323 1060 P10443 dnaE DNA polymerase III subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.24 43.825 3 0.096496 21176 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 28.765 25.574 114980000 7175400 5574200 6840800 0 0 0 16064000 13358000 16264000 0 0 0 5841500 3649100 4431400 0 0 0 12472000 14292000 9019700 0 0 0 7891 1060 7689 146535;146536;146537;146538;146539;146540;146541;146542;146543;146544;146545;146546 90347;90348 90348 2 GNSEDLER Unmodified 918.40429 0.4042885 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.931 11.747 2 0.0012043 2917 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.81 107.35 374690000 54269000 44209000 52888000 0 0 0 37661000 34274000 32351000 0 0 0 15738000 16444000 17466000 0 0 0 26821000 19745000 22822000 0 0 0 7892 1233 7690 146547;146548;146549;146550;146551;146552;146553;146554;146555;146556;146557;146558 90349;90350 90349 2 GNSGNTLDLGTYGTTTLDEVR Unmodified 2183.0342 0.03421984 1792 P75936 flgD Basal-body rod modification protein FlgD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 41.327 39.887 2 7.7705E-35 19401 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 220.52 215.44 32414000 12210000 9406200 10798000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7893 1792 7691 146559;146560;146561 90351;90352;90353 90352 3 GNSYMQWMIPGLHLELGPNSAEVK Unmodified 2670.2934 0.29342819 1524 P39321 tamB Translocation and assembly module TamB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.634 35.085 3 0.10889 12765 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 19.21 15.678 123990000 0 0 0 8416500 8743100 8965100 0 0 0 8956600 9419400 9067500 0 0 0 9730300 10919000 9162000 0 0 0 12500000 14527000 13584000 7894 1524 7692 146562;146563;146564;146565;146566;146567;146568;146569;146570;146571;146572;146573 90354;90355;90356;90357;90358 90354 5 GNTGENLLALLEGR Unmodified 1455.7682 0.76815616 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 53.259 52.022 2;3 3.3919E-11 25456 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 212.09 201.72 5244700000 744520000 703230000 747890000 5327200 4769000 5792000 166760000 175300000 178050000 12709000 15519000 14378000 340940000 363600000 304650000 13034000 12719000 10836000 440540000 445530000 515410000 7979800 5187700 10033000 7895 375 7693 146574;146575;146576;146577;146578;146579;146580;146581;146582;146583;146584;146585;146586;146587;146588;146589;146590;146591;146592;146593;146594;146595;146596;146597;146598;146599;146600;146601;146602;146603;146604;146605;146606;146607;146608;146609;146610;146611;146612;146613;146614;146615;146616;146617;146618;146619;146620 90359;90360;90361;90362;90363;90364;90365;90366;90367;90368;90369;90370;90371;90372;90373;90374;90375;90376;90377;90378;90379;90380;90381;90382;90383;90384;90385;90386;90387;90388;90389;90390;90391;90392;90393 90384 34 GNTISTPR Unmodified 844.44028 0.44028008 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.063 12.39 2 0.037211 3180 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 68.214 53.801 272970000 0 0 0 0 0 0 79215000 79483000 0 18213000 18176000 19073000 0 48997000 0 2872600 3049400 3890000 0 0 0 0 0 0 7896 25 7694 146621;146622;146623;146624;146625;146626;146627;146628;146629 90394 90394 0 GNTSWVAPLAWHPENR Unmodified 1833.8911 0.89106526 103 P04995 sbcB Exodeoxyribonuclease I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 37.964 36.223 3 0.0037878 17454 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 56.959 52.991 198110000 24693000 21875000 17313000 0 0 0 14130000 14316000 12048000 0 1126500 0 15628000 12301000 16680000 0 0 0 13366000 17632000 17000000 0 0 0 7897 103 7695 146630;146631;146632;146633;146634;146635;146636;146637;146638;146639;146640;146641;146642 90395;90396;90397;90398;90399;90400;90401;90402;90403;90404 90398 10 GNVEYWVALIQPGK Unmodified 1572.83 0.83002813 821 P0ADY7 rplP 50S ribosomal protein L16 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 51.733 50.59 2;3 2.0367E-08 24901 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 189.57 184.68 5183600000 595980000 635840000 558810000 13473000 12265000 12504000 215260000 202680000 184620000 20411000 19306000 20109000 334360000 340140000 304010000 34775000 20947000 24738000 526980000 518470000 498600000 28526000 32363000 28451000 7898 821 7696 146643;146644;146645;146646;146647;146648;146649;146650;146651;146652;146653;146654;146655;146656;146657;146658;146659;146660;146661;146662;146663;146664;146665;146666;146667;146668;146669;146670;146671;146672;146673;146674;146675;146676;146677;146678;146679;146680;146681;146682;146683;146684;146685;146686;146687;146688;146689;146690 90405;90406;90407;90408;90409;90410;90411;90412;90413;90414;90415;90416;90417;90418;90419;90420;90421;90422;90423;90424;90425;90426;90427;90428;90429;90430;90431;90432;90433;90434;90435;90436;90437;90438;90439;90440;90441;90442;90443;90444;90445;90446 90420 42 GNVIDPLDMVDGISLPELLEK Unmodified 2266.1767 0.17665032 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 55.811 54.326 2 2.106E-06 25789 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 92.551 80.191 457430000 36375000 46317000 0 0 0 0 4900900 2742100 0 0 0 0 61003000 0 60081000 0 0 0 80400000 82559000 83048000 0 0 0 7899 158 7697 146691;146692;146693;146694;146695;146696;146697;146698;146699 90447;90448;90449 90449 3 GNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLK Unmodified 3754.9352 0.93524484 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 1 2 2 2 2 2 2 3 2 3 2 1 2 3 3 2 2 2 2 47.587 46.239 3;4;5 1.9008E-44 22448 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 217.93 214.54 9293800000 1323700000 1168100000 1325900000 35179000 40060000 23426000 439370000 340400000 392960000 95867000 84445000 93318000 523650000 451600000 436880000 66555000 53554000 48979000 616910000 720810000 772950000 84840000 93017000 61372000 7900 987 7698 146700;146701;146702;146703;146704;146705;146706;146707;146708;146709;146710;146711;146712;146713;146714;146715;146716;146717;146718;146719;146720;146721;146722;146723;146724;146725;146726;146727;146728;146729;146730;146731;146732;146733;146734;146735;146736;146737;146738;146739;146740;146741;146742;146743;146744;146745;146746;146747;146748;146749;146750;146751 90450;90451;90452;90453;90454;90455;90456;90457;90458;90459;90460;90461;90462;90463;90464;90465;90466;90467;90468;90469;90470;90471;90472;90473;90474;90475;90476;90477;90478;90479;90480;90481;90482;90483;90484;90485;90486;90487;90488;90489;90490;90491;90492;90493;90494;90495 90488 46 GNVTINGVK Unmodified 900.50288 0.50288033 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.769 15.404 2 0.10655 3662 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 46.426 25.944 601520000 111460000 0 0 0 280940 0 108200000 119170000 111850000 0 0 0 0 0 0 0 0 0 48236000 55857000 45599000 509390 365910 0 7901 1587 7699 146752;146753;146754;146755;146756;146757;146758;146759;146760;146761 90496 90496 0 GNWQLVMHNYEEASPQPCAMNLR Unmodified 2744.2258 0.22575933 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 41.192 39.452 3 6.9075E-22 19287 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 164.94 164.18 98934000 0 0 0 0 0 0 9357700 9355800 8659600 0 0 0 8234800 10906000 11871000 0 0 0 14144000 12080000 14324000 0 0 0 7902 1324 7700 146762;146763;146764;146765;146766;146767;146768;146769;146770 90497;90498;90499 90497 3 GNWQLVMHNYEEASPQPCAMNLRPFEAVWWLQK Unmodified 4028.8913 0.89128831 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 53.838 52.412 4 0.029187 25694 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 39.587 38.321 191520000 0 0 0 0 0 0 21225000 0 15775000 0 0 0 17354000 15378000 18606000 0 0 0 31764000 36392000 35022000 0 0 0 7903 1324 7701 146771;146772;146773;146774;146775;146776;146777;146778 90500;90501 90500 2 GNYEQNLSAGIAAFR Unmodified 1609.7849 0.78486885 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 40.587 38.984 2;3 5.8887E-21 19406 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 277.96 271.43 16180000000 175180000 156480000 145090000 2623700 2726700 4933500 1376700000 1250400000 1335400000 0 0 1899300 1440300000 1300300000 1221400000 3114700 4349500 0 2528600000 2808700000 2411000000 3337900 4631400 2943600 7904 993 7702 146779;146780;146781;146782;146783;146784;146785;146786;146787;146788;146789;146790;146791;146792;146793;146794;146795;146796;146797;146798;146799;146800;146801;146802;146803;146804;146805;146806;146807;146808;146809;146810;146811;146812;146813;146814;146815;146816 90502;90503;90504;90505;90506;90507;90508;90509;90510;90511;90512;90513;90514;90515;90516;90517;90518;90519;90520;90521;90522;90523;90524;90525;90526;90527;90528;90529;90530;90531;90532;90533;90534;90535 90502 34 GNYHSVSITINATHIEQVETLYEELGK Unmodified 3044.5091 0.50909451 437 P0A8J4 ybeD UPF0250 protein YbeD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 2 2 1 2 2 2 2 47.718 46.293 3;4 2.5214E-53 22581 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 241.54 229.19 826830000 48092000 66546000 76220000 0 0 0 98456000 94851000 88222000 0 0 0 48674000 35554000 38197000 0 0 0 66771000 75297000 89948000 0 0 0 7905 437 7703 146817;146818;146819;146820;146821;146822;146823;146824;146825;146826;146827;146828;146829;146830;146831;146832;146833;146834;146835;146836;146837;146838 90536;90537;90538;90539;90540;90541;90542;90543;90544;90545 90539 10 GNYHSVSITINATHIEQVETLYEELGKIDIVR Unmodified 3640.8737 0.87369044 437 P0A8J4 ybeD UPF0250 protein YbeD yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 52.176 50.767 5 2.3968E-10 18396 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 105.9 104.18 30938000 0 0 0 8506800 9826600 0 0 0 0 0 4904600 3974000 0 0 0 0 0 0 0 0 0 3725900 0 0 7906 437 7704 146839;146840;146841;146842;146843 90546;90547 90547 2 GNYSMGVR Unmodified 882.40179 0.40178608 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.303 14.905 2 0.0001056 4448 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 160.03 139.68 3394600000 390950000 385470000 385260000 28637000 27220000 30002000 126090000 132000000 120300000 85071000 69330000 68733000 145310000 145240000 161580000 69481000 73952000 72710000 240440000 223210000 221600000 69669000 60360000 61995000 7907 1644 7705 146844;146845;146846;146847;146848;146849;146850;146851;146852;146853;146854;146855;146856;146857;146858;146859;146860;146861;146862;146863;146864;146865;146866;146867 90548;90549;90550;90551;90552;90553;90554;90555;90556;90557;90558;90559;90560;90561;90562;90563;90564;90565;90566;90567;90568 90568 21 GPAAGNVTSL Unmodified 885.4556 0.45559579 565 P0A9X9 cspA Cold shock protein CspA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.232 25.02 2 0.00012279 11571 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.38 119.61 2695800000 112940000 83698000 83422000 2956500 2348800 0 304960000 306970000 289830000 0 0 1009900 199310000 185750000 164270000 0 0 0 329450000 324270000 303480000 1151600 0 0 7908 565 7706 146868;146869;146870;146871;146872;146873;146874;146875;146876;146877;146878;146879;146880;146881;146882;146883 90569;90570;90571;90572;90573;90574;90575;90576;90577;90578;90579;90580 90569 12 GPAAVNVTAI Unmodified 911.50763 0.50763136 566 P0A9Y6 cspC Cold shock-like protein CspC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 1 35.929 34.365 2 2.7374E-05 16355 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.21 87.225 16755000000 1013200000 891250000 837370000 9946200 8952700 8561300 1436400000 1364900000 1477700000 4651700 4439900 3238100 1475600000 1439200000 1260200000 11180000 5002500 5716400 1830200000 1833100000 1820900000 4269600 4222200 4819100 7909 566 7707 146884;146885;146886;146887;146888;146889;146890;146891;146892;146893;146894;146895;146896;146897;146898;146899;146900;146901;146902;146903;146904;146905;146906;146907;146908;146909;146910;146911 90581;90582;90583;90584;90585;90586;90587;90588;90589;90590;90591;90592;90593;90594;90595;90596;90597;90598;90599;90600;90601;90602;90603;90604;90605;90606;90607 90594 25 GPAIAQAFDAEGKPSK Unmodified 1585.81 0.81002097 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 21.874 21.716 2;3 1.1972E-18 8755 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 198.52 198.52 2823800000 336620000 36283000 245360000 5858700 5720500 5517000 237970000 220270000 235020000 20616000 20626000 18195000 217580000 209170000 165680000 4726600 3092400 3372000 291280000 259110000 265850000 6841600 6443200 2608200 7910 62 7708 146912;146913;146914;146915;146916;146917;146918;146919;146920;146921;146922;146923;146924;146925;146926;146927;146928;146929;146930;146931;146932;146933;146934;146935;146936;146937;146938;146939;146940;146941;146942;146943;146944;146945;146946;146947;146948;146949;146950;146951;146952;146953;146954;146955;146956 90608;90609;90610;90611;90612;90613;90614;90615;90616;90617;90618;90619;90620;90621;90622;90623;90624;90625;90626;90627;90628;90629;90630;90631;90632;90633;90634;90635;90636;90637;90638;90639;90640;90641;90642 90633 32 GPAYTEMSLFAR Unmodified 1341.6387 0.63872189 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.455 38.9 2 3.8937E-08 18985 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 193.38 193.38 496310000 25715000 22356000 18445000 6387100 7284800 6743500 45671000 42880000 43438000 0 40704000 37010000 19547000 19946000 20565000 6209300 3866100 4507600 29743000 31406000 28658000 11465000 10626000 13140000 7911 122 7709 146957;146958;146959;146960;146961;146962;146963;146964;146965;146966;146967;146968;146969;146970;146971;146972;146973;146974;146975;146976;146977;146978;146979 90643;90644;90645;90646;90647;90648;90649;90650;90651;90652;90653;90654;90655;90656;90657;90658;90659;90660 90655 14 GPDWSGIYASDNAILAHER Unmodified 2070.9759 0.9759171 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 40.128 38.508 2;3 8.6719E-23 19166 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 186.94 185.79 955450000 106030000 99110000 99000000 0 0 0 167820000 166030000 202830000 0 0 0 14353000 17071000 16349000 0 0 0 21634000 23642000 21581000 0 0 0 7912 1191 7710 146980;146981;146982;146983;146984;146985;146986;146987;146988;146989;146990;146991;146992;146993;146994 90661;90662;90663;90664;90665;90666;90667;90668;90669;90670;90671;90672 90661 12 GPEAEEALIAFR Unmodified 1301.6616 0.66156582 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 40.543 38.797 2;3 4.5619E-31 18812 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 265.06 244.5 1553000000 59706000 48216000 48394000 1259100 1458500 1686000 158360000 153470000 145440000 8687100 6430000 7936900 161110000 144770000 126630000 7408100 0 0 152390000 154860000 155960000 3095600 3433300 2323200 7913 1468 7711 146995;146996;146997;146998;146999;147000;147001;147002;147003;147004;147005;147006;147007;147008;147009;147010;147011;147012;147013;147014;147015;147016;147017;147018;147019;147020;147021;147022;147023;147024;147025;147026;147027;147028 90673;90674;90675;90676;90677;90678;90679;90680;90681;90682;90683;90684;90685;90686;90687;90688;90689;90690;90691;90692 90688 17 GPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHK Unmodified 4468.9398 0.939831 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 49.651 48.237 4 5.0298E-38 23887 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 189.05 187.95 352220000 0 0 0 0 0 0 41922000 0 41103000 37210000 33428000 28795000 33110000 31357000 29969000 0 0 0 26003000 24428000 24895000 0 0 0 7914 1739 7712 147029;147030;147031;147032;147033;147034;147035;147036;147037;147038;147039 90693;90694;90695;90696;90697;90698 90696 6 GPFIDLHLLK Unmodified 1151.6703 0.67028001 371 P0A7U3 rpsS 30S ribosomal protein S19 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 2 2 2 2 42.437 40.688 2;3 0.00030511 18989 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 111.74 109.81 2318800000 324120000 339880000 321200000 8386500 7532100 7151100 125160000 119390000 99352000 23688000 24057000 25303000 126380000 113960000 108980000 10715000 11415000 14038000 52688000 201560000 214310000 12619000 14281000 12658000 7915 371 7713 147040;147041;147042;147043;147044;147045;147046;147047;147048;147049;147050;147051;147052;147053;147054;147055;147056;147057;147058;147059;147060;147061;147062;147063;147064;147065;147066;147067;147068;147069;147070;147071;147072;147073;147074;147075;147076;147077;147078;147079;147080;147081;147082;147083 90699;90700;90701;90702;90703;90704;90705;90706;90707;90708;90709;90710;90711;90712;90713;90714;90715;90716;90717;90718;90719;90720;90721;90722;90723;90724;90725;90726;90727;90728;90729;90730;90731;90732;90733;90734;90735;90736;90737 90735 39 GPFMMDR Unmodified 852.36223 0.36222945 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.278 23.31 2 0.0033765 9664 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 108.24 95.685 922070000 75032000 67464000 69424000 1265500 1067600 1610000 85706000 91076000 86650000 0 1486000 1878500 74438000 65820000 56207000 0 0 0 84540000 78978000 79427000 0 0 0 7916 445 7714 147084;147085;147086;147087;147088;147089;147090;147091;147092;147093;147094;147095;147096;147097;147098;147099;147100 90738;90739;90740;90741;90742;90743;90744;90745;90746;90747;90748;90749 90749 12 GPFNMVSPYPVR Unmodified 1362.6754 0.67544174 1941 P77775 yfcH Epimerase family protein YfcH yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 39.574 38.122 2 1.3275E-11 18645 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.76 167.75 47106000 11976000 14348000 11792000 0 0 0 0 0 0 0 0 0 3171200 2673100 3145000 0 0 0 0 0 0 0 0 0 7917 1941 7715 147101;147102;147103;147104;147105;147106 90750;90751 90750 1 GPGGGYLLGK Unmodified 917.49707 0.49706667 1026 P0AGK8 iscR HTH-type transcriptional regulator IscR yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.252 22.087 2 0.0028017 9128 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.774 50.835 271490000 48009000 43004000 23623000 9509700 10832000 9924600 5311000 8333600 5109000 0 0 0 8050000 0 8020600 0 0 0 28492000 32310000 30964000 0 0 0 7918 1026 7716 147107;147108;147109;147110;147111;147112;147113;147114;147115;147116;147117;147118;147119;147120;147121 90752;90753;90754;90755;90756 90755 3 GPGLEEGMK Unmodified 916.43242 0.43241751 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.801 15.509 2 0.00015814 5260 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130.22 128.43 2381000000 167900000 199300000 175700000 0 0 0 199740000 241620000 227220000 0 0 0 186120000 146790000 190950000 0 0 772680 225670000 227850000 191370000 0 0 0 7919 299 7717 147122;147123;147124;147125;147126;147127;147128;147129;147130;147131;147132;147133;147134 90757;90758;90759;90760 90757 4 GPGLEEGMK Oxidation (M) 932.42733 0.42733213 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.686 12.467 2 0.0073827 3166 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 73.208 70.632 170290000 11461000 9288300 8930900 0 0 0 26953000 25123000 26258000 0 0 0 14031000 14323000 14636000 0 0 0 0 17778000 0 0 0 1512000 7920 299 7717 147135;147136;147137;147138;147139;147140;147141;147142;147143;147144;147145 90761 90761 140 1 GPGSFTGVR Unmodified 876.44537 0.44536545 1844 P76256 tsaB tRNA threonylcarbamoyladenosine biosynthesis protein TsaB yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.672 16.487 2 1.3705E-05 5381 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 161.68 149.96 386290000 27393000 24719000 20958000 872380 0 0 32423000 32596000 30211000 0 0 0 29342000 26414000 26813000 0 0 0 46931000 47520000 40101000 0 0 0 7921 1844 7718 147146;147147;147148;147149;147150;147151;147152;147153;147154;147155;147156;147157;147158 90762;90763;90764;90765;90766;90767;90768 90767 6 GPGSLDVLR Unmodified 912.50288 0.50288033 113 P05637 apaH Bis(5'-nucleosyl)-tetraphosphatase [symmetrical] yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.388 25.325 2 0.12369 11449 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 44.349 42.046 130270000 14498000 13680000 14720000 0 0 0 8220500 9363600 5872800 0 0 0 8608500 10010000 8005600 0 0 0 13306000 12556000 11434000 0 0 0 7922 113 7719 147159;147160;147161;147162;147163;147164;147165;147166;147167;147168;147169;147170 90769;90770 90769 0 GPHVPNMR Unmodified 906.4494 0.44940497 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 12.297 13.01 2 0.001989 3759 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.25 91.04 219470000 49677000 53401000 58548000 0 0 0 0 57845000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7923 445 7720 147171;147172;147173;147174 90771;90772;90773 90772 3 GPHWSAEVFNK Unmodified 1270.6095 0.60947067 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.276 22.527 2 0.13496 9325 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 37.549 4.3586 55449000 0 3572900 0 1046100 1335500 1179700 5714300 5113700 0 0 0 0 4485900 3809300 4823000 0 0 0 7324000 7730200 7512300 0 803700 998110 7924 193 7721 147175;147176;147177;147178;147179;147180;147181;147182;147183;147184;147185;147186;147187;147188 90774 90774 1 GPIEFSNQELDDLIIR Unmodified 1857.9472 0.94724273 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 53.349 51.916 2;3 9.2375E-31 24324 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 283.44 278.13 4592000000 246340000 236630000 225570000 18768000 0 0 337470000 355700000 358000000 0 41312000 44407000 450760000 448830000 445800000 0 0 0 465650000 451660000 465120000 0 0 0 7925 92 7722 147189;147190;147191;147192;147193;147194;147195;147196;147197;147198;147199;147200;147201;147202;147203;147204;147205;147206;147207;147208;147209;147210;147211;147212;147213;147214;147215 90775;90776;90777;90778;90779;90780;90781;90782;90783;90784;90785;90786;90787;90788;90789;90790;90791;90792;90793;90794;90795;90796;90797;90798 90797 24 GPILCLVGPPGVGK Unmodified 1362.7693 0.76934213 536 P0A9M0 lon Lon protease yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.425 40.946 2 0.00019293 16812 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 105.4 101.51 389050000 0 0 0 0 796080 0 58072000 0 49223000 6295000 6556900 0 43462000 50208000 43627000 17314000 9277000 12593000 0 48428000 40523000 0 0 2679200 7926 536 7723 147216;147217;147218;147219;147220;147221;147222;147223;147224;147225;147226;147227;147228;147229 90799;90800;90801 90799 2 GPILMLEGFFHAQDLEIYDQHR Unmodified 2628.2795 0.27949268 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 2 2 2 53.985 52.563 3;4 3.8492E-28 25845 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.27 160.07 298460000 59397000 60538000 49627000 0 0 0 9363600 9244000 0 0 0 0 0 7182000 6412700 0 0 0 35028000 30030000 31636000 0 0 0 7927 1326 7724 147230;147231;147232;147233;147234;147235;147236;147237;147238;147239;147240;147241;147242;147243;147244;147245 90802;90803;90804;90805;90806;90807;90808 90806 5 GPILTDSGGFQVFSLGDIRK Unmodified 2106.111 0.11095402 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 46.979 47.034 3 1.9051E-18 17983 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 140.06 139.47 56156000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24591000 14798000 16767000 0 0 0 0 0 0 7928 395 7725 147246;147247;147248 90809;90810;90811 90809 3 GPIPLPTR Unmodified 849.50724 0.50723743 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.372 25.216 2 0.00091102 8970 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 117.93 113.26 6079100000 856330000 804520000 862430000 10186000 8818200 8785300 279070000 302320000 303120000 44515000 39742000 32430000 307790000 297540000 273820000 12991000 7452100 8317800 507040000 515480000 526550000 22180000 25127000 22549000 7929 365 7726 147249;147250;147251;147252;147253;147254;147255;147256;147257;147258;147259;147260;147261;147262;147263;147264;147265;147266;147267;147268;147269;147270;147271;147272;147273;147274;147275 90812;90813;90814;90815;90816;90817;90818;90819;90820;90821;90822;90823;90824;90825;90826;90827;90828;90829;90830 90820 18 GPIPLPTRK Unmodified 977.6022 0.60220045 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 17.494 17.74 2 0.009107 5256 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 67.981 57.289 161900000 0 0 0 11243000 10029000 7569900 0 0 0 21588000 23173000 22832000 0 0 0 10099000 0 2444900 0 0 0 17786000 17629000 17508000 7930 365 7727 147276;147277;147278;147279;147280;147281;147282;147283;147284;147285;147286 90831;90832;90833;90834;90835;90836;90837;90838;90839;90840 90834 10 GPITALAEDLAQLR Unmodified 1466.8093 0.80929269 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 2 2 53.834 52.417 2;3 3.6048E-08 25766 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.38 124.21 203620000 26865000 28579000 26846000 0 0 0 8843100 8230000 6187900 0 0 0 11521000 16498000 13200000 0 0 0 20472000 19265000 17112000 0 0 0 7931 623 7728 147287;147288;147289;147290;147291;147292;147293;147294;147295;147296;147297;147298;147299;147300;147301;147302;147303;147304;147305;147306 90841;90842;90843;90844;90845;90846;90847;90848;90849;90850;90851 90845 11 GPLDHDGFSAVEAIAPGVIER Unmodified 2149.0804 0.080382171 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 3 3 3 5 5 5 2 3 3 5 5 5 2 2 2 5 5 5 3 4 3 48.825 47.524 2;3;4 7.4613E-75 19117 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 373.92 340.72 9981100000 281600000 253690000 257390000 36073000 46240000 43466000 778260000 731350000 711950000 171200000 235500000 229850000 885850000 840560000 745410000 77496000 50675000 63870000 1041500000 1056000000 999340000 145840000 147820000 150190000 7932 645 7729 147307;147308;147309;147310;147311;147312;147313;147314;147315;147316;147317;147318;147319;147320;147321;147322;147323;147324;147325;147326;147327;147328;147329;147330;147331;147332;147333;147334;147335;147336;147337;147338;147339;147340;147341;147342;147343;147344;147345;147346;147347;147348;147349;147350;147351;147352;147353;147354;147355;147356;147357;147358;147359;147360;147361;147362;147363;147364;147365;147366;147367;147368;147369;147370;147371;147372;147373;147374;147375;147376;147377;147378;147379;147380;147381;147382;147383;147384;147385;147386;147387;147388;147389;147390;147391;147392;147393;147394;147395 90852;90853;90854;90855;90856;90857;90858;90859;90860;90861;90862;90863;90864;90865;90866;90867;90868;90869;90870;90871;90872;90873;90874;90875;90876;90877;90878;90879;90880;90881;90882;90883;90884;90885;90886;90887;90888;90889;90890;90891;90892;90893;90894;90895;90896;90897;90898;90899;90900;90901;90902;90903;90904;90905;90906;90907;90908;90909;90910;90911;90912;90913;90914;90915 90857 64 GPLNLPNLTR Unmodified 1093.6244 0.62439245 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.365 34.801 2 3.848E-05 16976 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.2 131.41 1520300000 134110000 127440000 100160000 0 694510 0 176540000 198630000 213970000 0 0 0 86259000 67154000 73589000 0 0 0 118350000 131110000 92334000 0 0 0 7933 256 7730 147396;147397;147398;147399;147400;147401;147402;147403;147404;147405;147406;147407;147408 90916;90917;90918;90919;90920;90921;90922;90923;90924;90925 90918 10 GPLNNPADR Unmodified 952.47264 0.47264284 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By matching By MS/MS 1 1 13.215 13.914 2 0.001857 4217 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.39 94.022 13095000 6941700 0 6153300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7934 1888 7731 147409;147410 90926 90926 0 GPLNNPADRDHCIQYMVAIPLLFGR Unmodified 2866.4371 0.43707273 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 52.599 51.393 3;4 1.5011E-50 25191 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 240.31 238 337970000 121670000 115700000 100600000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7935 1888 7732 147411;147412;147413;147414;147415;147416 90927;90928;90929;90930;90931;90932 90930 6 GPLSMTLGIHGFVPMGR Unmodified 1768.9117 0.91166605 1016 P0AGG0 thiL Thiamine-monophosphate kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 46.45 44.896 3 0.00011652 21872 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.919 64.393 74060000 12593000 9678400 9914300 0 0 0 11630000 8799800 7884300 0 0 0 0 0 0 0 0 0 0 13561000 0 0 0 0 7936 1016 7733 147417;147418;147419;147420;147421;147422;147423 90933 90933 1 GPLTTPVGGGIR Unmodified 1123.635 0.63495714 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 1 2 2 2 2 2 2 25.337 24.338 2 5.7468E-07 10597 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.12 146.55 25227000000 3858800000 4102900000 3713800000 3696200 4235400 3129900 1119300000 1081400000 1134200000 0 0 0 1427400000 1182900000 1221200000 0 0 0 1907700000 2065500000 2400800000 0 0 0 7937 179 7734 147424;147425;147426;147427;147428;147429;147430;147431;147432;147433;147434;147435;147436;147437;147438;147439;147440;147441;147442;147443;147444;147445;147446;147447;147448 90934;90935;90936;90937;90938;90939;90940;90941;90942;90943;90944;90945;90946;90947;90948;90949;90950;90951;90952;90953;90954;90955 90939 18 GPLVVLVDR Unmodified 966.58622 0.58621603 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.383 30.039 2 0.00058912 16078 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 106.36 65.129 953020000 65400000 68711000 68798000 0 0 0 95492000 89220000 86629000 0 0 0 70148000 66930000 64140000 0 0 0 97220000 93729000 86610000 0 0 0 7938 1221 7735 147449;147450;147451;147452;147453;147454;147455;147456;147457;147458;147459;147460;147461;147462;147463;147464;147465;147466;147467;147468;147469;147470;147471;147472 90956;90957;90958;90959;90960;90961;90962;90963;90964;90965;90966;90967;90968;90969;90970 90961 15 GPMGLEALTTYK Unmodified 1279.6482 0.64822394 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.532 36.859 2 2.3921E-05 17921 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.68 116.42 732040000 85725000 77592000 69927000 0 0 0 58777000 65395000 65774000 0 0 0 46766000 41440000 46333000 0 0 0 59458000 63753000 51098000 0 0 0 7939 148 7736 147473;147474;147475;147476;147477;147478;147479;147480;147481;147482;147483;147484 90971;90972;90973;90974;90975;90976;90977;90978;90979;90980;90981;90982 90977 12 GPNMMIDEDTHAHLTPEAIPELLER Unmodified 2828.3473 0.34731425 928 P0AFD1 nuoE NADH-quinone oxidoreductase subunit E yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1 45.639 44.08 3;4 2.1996E-15 21528 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.31 111.31 995690000 55752000 67878000 42428000 0 0 0 64417000 58369000 67970000 10901000 0 5714300 109180000 109660000 83965000 0 0 0 138540000 141650000 28111000 0 5873600 5276700 7940 928 7737 147485;147486;147487;147488;147489;147490;147491;147492;147493;147494;147495;147496;147497;147498;147499;147500;147501;147502;147503;147504;147505;147506;147507;147508;147509 90983;90984;90985;90986;90987;90988;90989;90990;90991;90992 90988 10 GPNWEDDLGGEFDK Unmodified 1577.6634 0.66341631 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.161 39.279 2 1.9836E-20 19150 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 223.77 223.68 619510000 17632000 15230000 16937000 0 0 0 48928000 54601000 52011000 3396600 2577700 3268900 54333000 50607000 44791000 0 0 0 78923000 73673000 68732000 11749000 10907000 11216000 7941 1067 7738 147510;147511;147512;147513;147514;147515;147516;147517;147518;147519;147520;147521;147522;147523;147524;147525;147526;147527 90993;90994;90995;90996;90997;90998;90999;91000;91001;91002 90996 10 GPQAAEIFK Unmodified 959.50763 0.50763136 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 22.916 22.272 2 0.004522 9248 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 77.732 72.252 262170000 0 130560000 114700000 0 0 0 0 0 4466500 0 0 0 0 0 0 0 0 0 4390300 3872800 4179200 0 0 0 7942 1464 7739 147528;147529;147530;147531;147532;147533 91003 91003 1 GPQAAEIFKR Unmodified 1115.6087 0.60874239 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 17.136 17.854 2;3 1.0241E-05 6411 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 135.71 94.829 45047000 30645000 0 14402000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7943 1464 7740 147534;147535;147536;147537;147538;147539 91004;91005;91006;91007;91008;91009 91007 6 GPQAALAQISGLDANSEVVSEAVTAYK Unmodified 2688.3606 0.36063936 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.746 50.498 2;3 5.2763E-41 24927 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 273.13 267.1 986370000 68012000 56583000 67852000 0 0 0 133220000 108330000 118020000 0 0 0 105880000 102350000 65403000 0 0 0 49511000 53511000 57698000 0 0 0 7944 214 7741 147540;147541;147542;147543;147544;147545;147546;147547;147548;147549;147550;147551;147552;147553;147554;147555;147556;147557;147558;147559;147560;147561;147562;147563 91010;91011;91012;91013;91014;91015;91016;91017;91018;91019;91020;91021;91022;91023;91024;91025;91026;91027;91028 91013 15 GPQFLHIMTK Unmodified 1170.6219 0.62194961 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 1 1 2 2 2 2 2 2 1 27.701 26.398 2;3 0.0016631 12128 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.149 79.581 400070000 33710000 39239000 30750000 0 0 0 34705000 27820000 32048000 3413700 2056200 2561600 32125000 26729000 22325000 0 0 0 34960000 37887000 36853000 2890200 0 0 7945 1909 7742 147564;147565;147566;147567;147568;147569;147570;147571;147572;147573;147574;147575;147576;147577;147578;147579;147580;147581;147582;147583;147584;147585;147586;147587;147588;147589;147590;147591 91029;91030;91031;91032;91033;91034;91035;91036;91037;91038;91039;91040;91041;91042 91033 12 GPQLPAPNMLMMDR Unmodified 1569.7466 0.74657455 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 2 2 1 2 2 2 2 2 2 1 44.753 43.214 2;3 7.3529E-08 21073 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.89 133.28 1532000000 182830000 192730000 160210000 1906900 1705400 1838400 87082000 90848000 82219000 0 0 0 142060000 127890000 128650000 0 0 0 114720000 111180000 105030000 1101300 0 0 7946 271 7743 147592;147593;147594;147595;147596;147597;147598;147599;147600;147601;147602;147603;147604;147605;147606;147607;147608;147609;147610;147611;147612;147613;147614;147615;147616;147617 91043;91044;91045;91046;91047;91048;91049;91050;91051;91052;91053;91054;91055 91046 13 GPQLPAPNMLMMDR Oxidation (M) 1585.7415 0.74148917 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 40.446 39.003 2 0.02848 18444 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 47.844 40.198 37597000 12127000 10035000 8496800 0 0 0 0 0 0 0 0 0 6937400 0 0 0 0 0 0 0 0 0 0 0 7947 271 7743 147618;147619;147620;147621 91056 91056 128;129 1 GPQVPAGLPMTEEQLK Unmodified 1693.8709 0.87090667 1619 P60390 rsmH Ribosomal RNA small subunit methyltransferase H yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 36.651 35.198 2 0.00027294 16226 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 71.806 60.593 69211000 13294000 15118000 12459000 0 0 0 0 0 0 0 0 0 8058500 8757600 11523000 0 0 0 0 0 0 0 0 0 7948 1619 7744 147622;147623;147624;147625;147626;147627 91057 91057 1 GPSAANVIAL Unmodified 911.50763 0.50763136 495 P0A972 cspE Cold shock-like protein CspE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 1 2 1 2 2 3 2 2 2 2 2 2 2 2 2 41.699 40.127 1;2 2.0463E-06 19532 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.36 122.86 21008000000 836290000 817900000 718650000 7590900 6742000 6986900 1917300000 851670000 1733800000 3344500 3567600 2603500 2468300000 2192000000 2137700000 12857000 7624200 9152500 2359800000 2414400000 2486600000 4585000 4169700 3952400 7949 495 7745 147628;147629;147630;147631;147632;147633;147634;147635;147636;147637;147638;147639;147640;147641;147642;147643;147644;147645;147646;147647;147648;147649;147650;147651;147652;147653;147654;147655;147656;147657;147658;147659;147660;147661;147662;147663;147664;147665;147666;147667;147668;147669;147670;147671;147672;147673 91058;91059;91060;91061;91062;91063;91064;91065;91066;91067;91068;91069;91070;91071;91072;91073;91074;91075;91076;91077;91078;91079;91080;91081;91082;91083;91084;91085;91086;91087;91088;91089;91090;91091;91092;91093;91094;91095;91096 91071 30 GPSICDVLTGGAHGVPR Unmodified 1691.8413 0.84133787 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.614 32.174 3 6.2604E-08 15283 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.43 109.19 1476800000 124650000 112000000 92064000 0 0 0 138900000 130270000 149530000 0 0 0 133250000 109100000 116120000 0 0 0 122400000 128580000 119960000 0 0 0 7950 1956 7746 147674;147675;147676;147677;147678;147679;147680;147681;147682;147683;147684;147685 91097;91098;91099;91100;91101;91102;91103;91104;91105;91106;91107;91108 91103 12 GPSIMPGGQK Unmodified 970.4906 0.49060109 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.891 16.707 2 0.00014826 5393 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 126.04 120.09 6323400000 460410000 456550000 385180000 0 0 0 577090000 573020000 564180000 0 0 0 536380000 505190000 452660000 0 0 0 616990000 581580000 614130000 0 0 0 7951 24 7747 147686;147687;147688;147689;147690;147691;147692;147693;147694;147695;147696;147697 91109;91110;91111;91112;91113;91114;91115;91116;91117;91118;91119 91119 11 GPSISIATACTSGVHNIGHAAR Unmodified 2176.0807 0.080733297 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 3 3 3 1 3 3 3 1 3 3 3 21.945 21.939 2;3;4 1.2162E-63 8641 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 229.6 226.46 5714000000 302590000 238050000 214020000 733380 1289200 1992200 693630000 570740000 643060000 4242600 0 0 514940000 434940000 444090000 0 1946500 0 538160000 539270000 570270000 0 0 0 7952 596 7748 147698;147699;147700;147701;147702;147703;147704;147705;147706;147707;147708;147709;147710;147711;147712;147713;147714;147715;147716;147717;147718;147719;147720;147721;147722;147723;147724;147725;147726;147727;147728;147729;147730;147731;147732;147733;147734;147735;147736 91120;91121;91122;91123;91124;91125;91126;91127;91128;91129;91130;91131;91132;91133;91134;91135;91136;91137;91138;91139;91140;91141;91142;91143;91144 91139 24 GPTDFVENYAK Unmodified 1239.5772 0.57716749 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.887 30.458 2 2.5374E-08 14139 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 146.69 118.29 733000000 0 0 92386000 0 0 0 136540000 136190000 143460000 0 0 0 84922000 64456000 75047000 0 0 0 0 0 0 0 0 0 7953 167 7749 147737;147738;147739;147740;147741;147742;147743;147744;147745;147746;147747;147748 91145;91146;91147;91148;91149;91150;91151;91152;91153;91154;91155 91150 11 GPTLEDACNVLGVKPTDDATTIK Unmodified 2414.1999 0.19990496 1378 P31680 djlA DnaJ-like protein DjlA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.725 36.031 3 4.9212E-15 17344 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 118.32 115.6 105800000 4671400 5400200 0 508680 0 0 11175000 9766700 10848000 0 0 0 9797800 8624700 8088100 0 0 0 13375000 11880000 11661000 0 0 0 7954 1378 7750 147749;147750;147751;147752;147753;147754;147755;147756;147757;147758;147759;147760 91156;91157;91158;91159;91160 91158 5 GPTLEDACNVLGVKPTDDATTIKR Unmodified 2570.301 0.30101599 1378 P31680 djlA DnaJ-like protein DjlA yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 33.182 31.289 4 0.1486 11835 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 24.558 24.217 19863000 0 0 0 1181900 1183300 1853200 0 0 0 3616900 0 3379800 0 0 0 0 0 0 0 0 0 0 5344000 3303700 7955 1378 7751 147761;147762;147763;147764;147765;147766;147767 91161 91161 1 GPTLLEDFILR Unmodified 1272.7078 0.70778773 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.369 52.94 2 1.0203E-19 26217 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 234.05 226.41 637470000 127900000 0 126230000 946580 0 974270 70753000 68465000 58011000 0 0 0 23212000 19600000 20544000 0 0 0 37087000 40754000 42996000 0 0 0 7956 1174 7752 147768;147769;147770;147771;147772;147773;147774;147775;147776;147777;147778;147779;147780;147781 91162;91163;91164;91165;91166;91167 91165 6 GPVAAASAEATPATAAPVAK Unmodified 1749.9261 0.92611336 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.531 21.977 2 7.0022E-30 9609 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 212.83 209.49 208710000 9418700 11792000 10073000 0 0 0 26246000 18842000 21714000 0 0 0 14695000 14927000 17114000 0 0 0 22868000 20357000 20663000 0 0 0 7957 210 7753 147782;147783;147784;147785;147786;147787;147788;147789;147790;147791;147792;147793 91168;91169;91170;91171;91172;91173 91168 6 GPVATVLVR Unmodified 910.56 0.56000128 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.294 23.388 2 6.5425E-05 10477 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 145.04 123.12 1394200000 171420000 154980000 141880000 9692600 9872100 9089300 84969000 83851000 84178000 28576000 30785000 27985000 76675000 63942000 51812000 27198000 24196000 22863000 87485000 92314000 78326000 9976300 11065000 11119000 7958 297 7754 147794;147795;147796;147797;147798;147799;147800;147801;147802;147803;147804;147805;147806;147807;147808;147809;147810;147811;147812;147813;147814;147815;147816;147817 91174;91175;91176;91177;91178;91179;91180;91181;91182;91183;91184;91185;91186;91187;91188;91189;91190;91191;91192;91193;91194;91195;91196;91197 91182 24 GPVENTAR Unmodified 842.42463 0.42463001 1623 P60560 guaC GMP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.356 11.171 2 0.00017849 2470 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 154.09 123.48 1528300000 153850000 149050000 158670000 0 0 0 83198000 108470000 102680000 0 0 0 140170000 130930000 60419000 0 0 0 208420000 44553000 187930000 0 0 0 7959 1623 7755 147818;147819;147820;147821;147822;147823;147824;147825;147826;147827;147828;147829 91198;91199;91200;91201;91202 91198 5 GPVVDENALIAALQK Unmodified 1536.8512 0.8511575 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.26 46.924 2;3 7.6533E-15 23269 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.78 219.38 1783400000 179990000 170950000 158680000 0 0 0 156160000 159660000 140460000 0 0 0 131790000 118950000 104090000 0 0 0 154990000 153790000 153840000 0 0 0 7960 1485 7756 147830;147831;147832;147833;147834;147835;147836;147837;147838;147839;147840;147841;147842;147843;147844;147845;147846;147847;147848;147849;147850;147851;147852;147853 91203;91204;91205;91206;91207;91208;91209;91210;91211;91212;91213;91214;91215;91216;91217;91218;91219;91220;91221;91222;91223;91224;91225;91226 91203 24 GPYESGSGHSSGLGHQESR Unmodified 1927.8409 0.84088018 23 CON__Q86YZ3 yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 11.21 11.366 3 1.5118E-07 2334 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 87.16 87.051 16280000 0 0 0 0 0 0 0 0 0 7252100 5260500 3767800 0 0 0 0 0 0 0 0 0 0 0 0 + 7961 23 7757 147854;147855;147856 91227;91228 91227 2 GPYESGSGHSSGLGHR Unmodified 1583.7077 0.70768116 23 CON__Q86YZ3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 11.126 11.262 2;3 1.4142E-30 2297 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 251.03 243.9 150950000 0 0 0 0 0 0 0 0 0 46160000 40457000 42525000 0 0 0 2100000 1526700 0 0 0 0 8784100 9393500 0 + 7962 23 7758 147857;147858;147859;147860;147861;147862;147863;147864;147865;147866 91229;91230;91231;91232 91230 4 GQAHWEGDIK Unmodified 1139.536 0.53597137 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 13.19 14.049 2;3 9.7643E-06 4332 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.38 147.18 4824900000 768660000 961070000 972850000 0 0 0 568700000 518490000 426710000 0 0 0 98684000 104680000 52367000 0 0 0 110320000 109520000 132870000 0 0 0 7963 1038 7759 147867;147868;147869;147870;147871;147872;147873;147874;147875;147876;147877;147878;147879;147880;147881;147882;147883;147884;147885;147886;147887;147888;147889 91233;91234;91235;91236;91237;91238;91239;91240;91241;91242;91243;91244;91245 91233 13 GQAHWEGDIKR Unmodified 1295.6371 0.6370824 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 2 11.947 12.659 2;3 0.00011732 3453 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 80.014 74.699 543480000 166170000 163920000 213380000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7964 1038 7760 147890;147891;147892;147893 91246;91247;91248;91249;91250 91249 5 GQAIIATADGR Unmodified 1071.5673 0.5672715 777 P0ADA3 nlpD Murein hydrolase activator NlpD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.828 17.369 2 2.3955E-10 6126 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 190.62 178.42 541180000 54586000 46868000 51237000 0 0 0 47971000 49504000 52399000 4694500 4107900 2530000 29970000 31751000 31238000 0 0 843230 47490000 47649000 38341000 0 0 0 7965 777 7761 147894;147895;147896;147897;147898;147899;147900;147901;147902;147903;147904;147905;147906;147907;147908;147909 91251;91252;91253;91254;91255;91256;91257;91258;91259;91260;91261;91262;91263;91264 91260 14 GQAIYAYVTLNHGEEPSPELYAEVR Unmodified 2805.361 0.36097371 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 43.383 41.95 2;3 8.0004E-50 20515 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 251.75 233.83 409430000 159580000 131070000 114210000 1326600 961460 2271700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7966 1305 7762 147910;147911;147912;147913;147914;147915;147916;147917;147918 91265;91266;91267;91268;91269;91270;91271;91272 91267 8 GQAMVDLLAQYEQHGLQLNSR Unmodified 2370.175 0.17502761 907 P0AF26 narJ Nitrate reductase molybdenum cofactor assembly chaperone NarJ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.763 48.406 3 3.7102E-08 22799 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.457 96.602 53686000 8903500 6283000 0 1234500 0 0 0 0 0 0 0 0 9539800 0 0 0 0 0 0 18426000 0 3379600 3327900 2591700 7967 907 7763 147919;147920;147921;147922;147923;147924;147925;147926 91273 91273 0 GQAMVEIGPGLAALTEPVGER Unmodified 2094.0779 0.07793933 142 P06992 rsmA Ribosomal RNA small subunit methyltransferase A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 50.999 49.743 2 1.1863E-15 24398 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 201.3 187.22 94741000 14198000 12679000 11555000 0 1206500 0 3853100 5187300 4301600 0 0 0 6756800 6303500 5325800 0 0 0 8084800 8270300 7018500 0 0 0 7968 142 7764 147927;147928;147929;147930;147931;147932;147933;147934;147935;147936;147937;147938;147939 91274;91275;91276;91277 91276 4 GQDAAGIITIDANNCFR Unmodified 1834.8632 0.86319553 978 P0AG16 purF Amidophosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 40.222 38.747 2 4.6351E-31 18963 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 233.59 233.59 65754000 17781000 14113000 13870000 0 0 0 0 0 0 0 0 0 0 4768900 4711300 0 0 0 0 5304000 5206000 0 0 0 7969 978 7765 147940;147941;147942;147943;147944;147945;147946 91278 91278 1 GQDIIALDVQGK Unmodified 1255.6772 0.67721588 612 P0AAT6 rsfS Ribosomal silencing factor RsfS yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 33.242 31.935 2 0.00046606 15135 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.658 78.426 171830000 45574000 40154000 0 0 0 0 0 0 0 0 0 0 11374000 13050000 9781500 0 0 0 15714000 19216000 16962000 0 0 0 7970 612 7766 147947;147948;147949;147950;147951;147952;147953;147954 91279;91280 91280 2 GQDLDEAR Unmodified 902.40937 0.40937388 236 P0A6E6 atpC ATP synthase epsilon chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.444 12.051 2 3.7226E-05 2494 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 173.59 167.21 1614000000 42122000 50752000 41081000 10647000 12292000 10232000 95287000 93545000 85765000 46623000 43459000 37686000 186200000 146930000 109210000 12708000 20355000 17228000 142840000 148890000 162540000 31375000 33082000 33139000 7971 236 7767 147955;147956;147957;147958;147959;147960;147961;147962;147963;147964;147965;147966;147967;147968;147969;147970;147971;147972;147973;147974;147975;147976;147977;147978 91281;91282;91283;91284;91285;91286;91287;91288;91289;91290;91291;91292;91293;91294;91295;91296;91297;91298 91288 18 GQDSEEVIAK Unmodified 1074.5193 0.51931826 1622 P60546 gmk Guanylate kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.715 13.432 2 0.00052464 3809 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.431 80.488 619290000 43636000 46211000 45919000 0 0 0 53743000 53834000 40683000 2218800 877370 1149300 52483000 43166000 51875000 0 0 0 61221000 56809000 65463000 0 0 0 7972 1622 7768 147979;147980;147981;147982;147983;147984;147985;147986;147987;147988;147989;147990;147991;147992;147993 91299;91300;91301;91302;91303;91304;91305;91306;91307 91305 9 GQDSFTIQPGER Unmodified 1333.6262 0.62624295 135 P06968 dut Deoxyuridine 5'-triphosphate nucleotidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.421 22.68 2 1.0494E-16 9592 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 205.14 200.16 1798200000 179160000 177850000 154210000 661030 661840 757160 145380000 123730000 124970000 0 0 0 150850000 134360000 0 0 0 0 192810000 217020000 195140000 0 0 598090 7973 135 7769 147994;147995;147996;147997;147998;147999;148000;148001;148002;148003;148004;148005;148006;148007;148008;148009 91308;91309;91310;91311;91312;91313;91314;91315;91316;91317;91318;91319 91316 12 GQEGMTFSTQPAGAPDTDWLADK Unmodified 2422.0747 0.074704446 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.797 43.483 2 1.0036E-09 21185 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 119.51 114.62 131350000 47289000 39804000 44261000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7974 921 7770 148010;148011;148012 91320;91321;91322 91321 3 GQEGMTFSTQPAGAPDTDWLADKDIAFLPEGVDEK Unmodified 3735.725 0.72503688 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 52.883 51.482 3;4 1.4803E-25 25422 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 158.16 157.41 3233400000 1035000000 959650000 873340000 39008000 36387000 26918000 32767000 42500000 37924000 0 0 0 19699000 23976000 22905000 0 0 0 29392000 27205000 26729000 0 0 0 7975 921 7771 148013;148014;148015;148016;148017;148018;148019;148020;148021;148022;148023;148024;148025;148026;148027;148028;148029;148030;148031;148032;148033;148034;148035;148036;148037;148038;148039 91323;91324;91325;91326;91327;91328;91329;91330;91331;91332;91333;91334;91335;91336;91337 91331 15 GQESEVTGVK Unmodified 1032.5088 0.50875357 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 11.946 12.592 2 0.0002121 3436 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.15 111.33 16883000000 1305500000 1603900000 1223000000 11446000 11876000 9984600 1355100000 1390600000 1283400000 0 12287000 9816100 1381100000 1321500000 999800000 3850400 3412300 3730600 1653500000 1639000000 1642200000 6571100 5500800 5839000 7976 264 7772 148040;148041;148042;148043;148044;148045;148046;148047;148048;148049;148050;148051;148052;148053;148054;148055;148056;148057;148058;148059;148060;148061;148062;148063 91338;91339;91340;91341;91342;91343;91344;91345;91346;91347;91348;91349;91350;91351;91352;91353 91339 14 GQETLDRFDFQDLMEEK Unmodified 2099.947 0.94698474 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.282 44.652 3 3.3401E-05 22162 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.035 82.417 209380000 22781000 21760000 19850000 1392000 1291500 1017200 21854000 18445000 21601000 2635300 2535400 2009300 9551600 10306000 11105000 0 0 0 14607000 12147000 14493000 0 0 0 7977 1910 7773 148064;148065;148066;148067;148068;148069;148070;148071;148072;148073;148074;148075;148076;148077;148078;148079;148080;148081 91354;91355;91356;91357;91358;91359;91360;91361;91362 91355 4 GQFAAVPLNILGDK Unmodified 1441.7929 0.79291434 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 48.542 47.265 2 6.8127E-07 19306 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 132.17 120.46 1696900000 0 401440000 390550000 28187000 27213000 29579000 0 0 4387800 43625000 32782000 13808000 121130000 112490000 112730000 4136000 3182000 2737900 180230000 181520000 3056500 1671600 1282900 1157700 7978 1211 7774 148082;148083;148084;148085;148086;148087;148088;148089;148090;148091;148092;148093;148094;148095;148096;148097;148098;148099;148100;148101;148102;148103;148104;148105;148106;148107 91363;91364;91365;91366;91367;91368;91369;91370;91371;91372;91373;91374;91375 91366 13 GQFDSEGLMDLSK Unmodified 1425.6446 0.64459513 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.108 37.432 2 2.3087E-07 18193 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.62 151.55 339970000 25246000 32908000 27668000 260820 0 0 30604000 33079000 29431000 0 0 0 28069000 25360000 24391000 0 0 0 29918000 28942000 24090000 0 0 0 7979 1246 7775 148108;148109;148110;148111;148112;148113;148114;148115;148116;148117;148118;148119;148120 91376;91377;91378;91379;91380;91381;91382;91383;91384;91385;91386;91387 91379 12 GQFENAFNSER Unmodified 1297.5687 0.56872807 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.031 22.337 2 2.673E-10 9485 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 189.18 189.18 388990000 17091000 15450000 14090000 5781200 4168000 4342900 29698000 32099000 31033000 10757000 9336400 13710000 26492000 23356000 24833000 0 0 0 36944000 31533000 36199000 8662900 6651600 6761500 7980 819 7776 148121;148122;148123;148124;148125;148126;148127;148128;148129;148130;148131;148132;148133;148134;148135;148136;148137;148138;148139;148140;148141 91388;91389;91390;91391;91392;91393;91394;91395;91396;91397;91398;91399;91400;91401 91395 14 GQFTDLQDQVISNLFK Unmodified 1851.9367 0.93667805 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 54.912 53.404 2 3.6043E-08 26270 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 117.03 110.59 175250000 30362000 25609000 0 0 0 0 28120000 15849000 18404000 0 0 2874000 17759000 0 0 0 0 0 0 36272000 0 0 0 0 7981 806 7777 148142;148143;148144;148145;148146;148147;148148;148149 91402 91402 1 GQGETLAFAGHTDVVPPGDADR Unmodified 2209.04 0.039973919 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1 1 1 1 2 2 2 30.627 29.301 3 0.0074178 13784 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.366 54.818 161380000 17056000 17282000 9581800 0 0 0 9416000 14014000 11546000 0 0 0 6782100 6382100 4474700 0 0 0 23382000 18922000 22544000 0 0 0 7982 849 7778 148150;148151;148152;148153;148154;148155;148156;148157;148158;148159;148160;148161;148162;148163;148164;148165;148166 91403;91404;91405;91406;91407;91408;91409 91405 0 GQGIVLNEPSVVAIR Unmodified 1550.878 0.87804096 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 39.317 37.703 2;3 5.2728E-20 14649 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 257.8 243.64 2160700000 94736000 102620000 84478000 22986000 20310000 19791000 127820000 122980000 122810000 146010000 126240000 111210000 87562000 86782000 87795000 38712000 22184000 25516000 165030000 170620000 182290000 61484000 68112000 62603000 7983 564 7779 148167;148168;148169;148170;148171;148172;148173;148174;148175;148176;148177;148178;148179;148180;148181;148182;148183;148184;148185;148186;148187;148188;148189;148190;148191;148192;148193;148194;148195;148196;148197;148198;148199;148200;148201;148202;148203;148204;148205;148206;148207;148208;148209;148210 91410;91411;91412;91413;91414;91415;91416;91417;91418;91419;91420;91421;91422;91423;91424;91425;91426;91427;91428;91429;91430;91431;91432;91433;91434;91435;91436;91437;91438;91439;91440;91441;91442 91424 32 GQGIVLNEPSVVAIRQDR Unmodified 1950.0647 0.064672527 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 32.723 31.128 3 4.1107E-05 11834 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 81.428 70.96 62251000 0 0 0 4918000 4257200 4895300 0 0 0 6926500 8477900 8664600 0 0 0 4100900 0 1777300 0 0 0 6815300 5611500 5806400 7984 564 7780 148211;148212;148213;148214;148215;148216;148217;148218;148219;148220;148221 91443;91444;91445;91446;91447;91448;91449;91450;91451 91446 9 GQGMQILATHLSDNAVDFR Unmodified 2072.0109 0.010922397 1021 P0AGJ2 trmH tRNA (guanosine(18)-2'-O)-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.538 38.683 3 0.00044564 18877 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 65.25 61.47 118220000 0 0 0 613840 0 0 7451700 6381200 0 0 0 2604900 12910000 0 11150000 0 0 0 24748000 23224000 20024000 3345600 2503500 3261300 7985 1021 7781 148222;148223;148224;148225;148226;148227;148228;148229;148230;148231;148232;148233 91452 91452 1 GQGVVHKPIPGWQSTLEQR Unmodified 2116.1178 0.11777073 1791 P75931 yceM Putative oxidoreductase YceM yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 22.755 22.204 3 1.2178E-06 9360 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.913 85.727 88596000 10728000 9838100 11492000 0 0 0 8006000 6906400 6662900 0 0 0 4561500 6086000 0 0 0 0 7480300 7465200 9369700 0 0 0 7986 1791 7782 148234;148235;148236;148237;148238;148239;148240;148241;148242;148243;148244 91453;91454;91455 91454 3 GQGYLFELR Unmodified 1081.5556 0.55564418 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.533 36.737 2 0.041795 18281 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 67.993 55.848 869940000 122830000 0 125040000 2834200 3031800 2511400 91369000 94123000 86300000 0 0 0 60048000 0 0 0 0 0 91098000 92086000 93378000 1536400 1689900 2077000 7987 1214 7783 148245;148246;148247;148248;148249;148250;148251;148252;148253;148254;148255;148256;148257;148258;148259 91456;91457;91458;91459;91460;91461;91462;91463;91464 91456 0 GQHLLAMK Unmodified 896.49021 0.49020716 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.505 14.25 2 0.0010251 4114 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.1 82.682 568700000 49187000 35438000 41075000 1654300 1639100 1761300 83014000 70746000 95472000 3234200 2110300 3054400 47762000 0 46050000 0 0 0 27650000 27720000 31130000 0 0 0 7988 585 7784 148260;148261;148262;148263;148264;148265;148266;148267;148268;148269;148270;148271;148272;148273;148274;148275;148276 91465;91466;91467;91468;91469;91470;91471;91472;91473 91472 9 GQHSSGSGQSPGHGQR Unmodified 1562.6934 0.69342808 23 CON__Q86YZ3 yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 8.8891 9.0447 3 0.10773 1479 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 27.208 23.346 7196300 0 0 0 0 0 0 0 0 0 2273600 2175400 2747300 0 0 0 0 0 0 0 0 0 0 0 0 + 7989 23 7785 148277;148278;148279 91474 91474 1 GQIEGAVSSSDASTEK Unmodified 1564.7217 0.72165947 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 13.774 14.666 2;3 1.7017E-30 4601 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 226.42 221.27 2548200000 250410000 241260000 172040000 1016600 1449300 903320 220350000 247880000 220940000 0 0 0 191370000 175040000 170930000 0 0 0 225830000 222030000 206720000 0 0 0 7990 382 7786 148280;148281;148282;148283;148284;148285;148286;148287;148288;148289;148290;148291;148292;148293;148294;148295;148296;148297;148298;148299;148300;148301;148302;148303;148304;148305;148306 91475;91476;91477;91478;91479;91480;91481;91482;91483;91484;91485;91486;91487;91488 91477 14 GQIEYIPFPDK Unmodified 1305.6605 0.66050319 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 39.605 37.865 1;2 9.1031E-07 18757 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 121.6 109.76 2044800000 182640000 189880000 166350000 455430 0 505570 5638300 4947800 214090000 10357000 9911800 10060000 195950000 180810000 200090000 0 0 0 218790000 222870000 231480000 0 0 0 7991 1716 7787 148307;148308;148309;148310;148311;148312;148313;148314;148315;148316;148317;148318;148319;148320;148321;148322;148323;148324;148325;148326;148327;148328;148329;148330;148331;148332;148333;148334;148335 91489;91490;91491;91492;91493;91494;91495;91496;91497;91498;91499;91500;91501;91502;91503 91493 13 GQIEYIPFPDKLK Unmodified 1546.8395 0.83953018 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 1 1 1 1 1 1 2 2 2 1 1 1 1 1 38.175 36.195 2;3 5.8724E-05 14703 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 102.4 77.625 99659000 0 4731500 0 1535300 1264400 1696500 3500700 2450100 2971200 27753000 24591000 19939000 0 0 0 0 0 1470300 1898400 0 0 1953100 2548400 1356300 7992 1716 7788 148336;148337;148338;148339;148340;148341;148342;148343;148344;148345;148346;148347;148348;148349;148350;148351;148352;148353;148354 91504;91505;91506;91507;91508;91509 91505 6 GQIGAYEAALMNTK Unmodified 1465.7235 0.72351415 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS 1 1 35.788 33.862 2 1.7478E-06 16526 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 127.37 110.01 77600000 0 0 0 0 0 0 0 42173000 35427000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7993 722 7789 148355;148356 91510;91511 91510 2 GQIGLEQR Unmodified 899.48248 0.48247924 661 P0ABJ1 cyoA Cytochrome bo(3) ubiquinol oxidase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 1 14.81 15.304 2 0.00092891 4149 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 117.18 83.534 551210000 32100000 25503000 25728000 420520 444900 6783700 53782000 52778000 7278400 15012000 13548000 14743000 44568000 38312000 0 3151100 2635600 2764600 79827000 0 75703000 15607000 21055000 19466000 7994 661 7790 148357;148358;148359;148360;148361;148362;148363;148364;148365;148366;148367;148368;148369;148370;148371;148372;148373;148374;148375;148376;148377;148378;148379;148380;148381;148382 91512;91513;91514;91515;91516;91517;91518;91519;91520;91521;91522;91523;91524;91525;91526;91527 91516 16 GQIQENQYQLNQVVER Unmodified 1944.9654 0.96535241 1583 P45955 ybgF Uncharacterized protein YbgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.284 28.028 2 1.2822E-49 12830 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 339.3 336.18 451970000 56939000 50500000 46466000 0 0 0 30462000 27201000 29265000 0 0 0 30103000 28054000 29896000 0 0 0 42364000 39681000 41040000 0 0 0 7995 1583 7791 148383;148384;148385;148386;148387;148388;148389;148390;148391;148392;148393;148394 91528;91529;91530;91531;91532;91533;91534;91535;91536;91537;91538;91539 91536 12 GQKPGEGYNIQQMLEILTAQNVPVK Unmodified 2754.4374 0.43744989 629 P0AB52 ychN Protein YchN yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.195 52.755 3 3.9336E-10 25711 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 116.23 115.37 1491400000 187980000 168190000 175140000 0 0 0 93901000 112000000 120710000 0 0 0 104000000 105630000 95229000 0 0 0 106410000 109410000 112830000 0 0 0 7996 629 7792 148395;148396;148397;148398;148399;148400;148401;148402;148403;148404;148405;148406 91540;91541;91542;91543;91544;91545;91546;91547;91548 91543 9 GQLIDGVWHDTWYDTK Unmodified 1932.9006 0.90062689 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 41.887 40.188 2;3 1.588E-13 19595 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 167.03 161.75 358920000 58505000 51927000 49526000 0 0 0 36551000 37870000 37489000 0 0 0 14248000 13901000 15454000 0 0 0 14912000 14515000 14027000 0 0 0 7997 1557 7793 148407;148408;148409;148410;148411;148412;148413;148414;148415;148416;148417;148418;148419;148420;148421;148422;148423;148424;148425;148426;148427;148428;148429;148430 91549;91550;91551;91552;91553;91554;91555 91553 7 GQLKEFLDANLA Unmodified 1317.6929 0.69286595 571 P0AA25 trxA Thioredoxin-1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 41.326 39.652 2 0.0015081 13976 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 79.148 72.558 40004000 0 0 0 6915000 7227200 6734900 0 0 0 0 0 5427700 0 0 0 0 0 3145500 0 0 0 4353200 3336000 2864900 7998 571 7794 148431;148432;148433;148434;148435;148436;148437;148438 91556;91557;91558;91559 91557 4 GQLSGVIK Unmodified 800.4756 0.47560295 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 17.499 17.533 2 0.10204 5230 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 48.787 7.2849 33820000 0 0 0 0 0 0 0 0 2741900 10734000 8768700 9303500 0 0 0 2271200 0 0 0 0 0 0 0 0 7999 819 7795 148439;148440;148441;148442;148443 91560;91561;91562 91561 3 GQMSAPVHSSFGWHLIELLDTR Unmodified 2480.2271 0.22706318 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 1 2 1 1 2 2 2 2 2 1 2 2 2 49.968 48.551 3;4 8.7357E-07 24081 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 100.08 92.128 3400000000 1010600000 77225000 952740000 820630 1113000 0 156840000 161380000 144070000 0 0 0 128680000 129150000 62731000 0 0 0 184540000 196640000 193440000 0 0 0 8000 688 7796 148444;148445;148446;148447;148448;148449;148450;148451;148452;148453;148454;148455;148456;148457;148458;148459;148460;148461;148462;148463;148464;148465;148466;148467 91563;91564;91565;91566;91567;91568;91569;91570 91564 7 GQNEDQNVGIK Unmodified 1200.5735 0.57347909 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.293 12.908 2 2.7108E-07 3628 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.88 140.25 14416000000 1258200000 1162500000 1243500000 44517000 43760000 53471000 1138900000 1307800000 1250900000 73460000 53115000 58279000 966780000 897070000 1062800000 17387000 13677000 14229000 1231800000 1218000000 1174100000 48255000 45665000 37610000 8001 240 7797 148468;148469;148470;148471;148472;148473;148474;148475;148476;148477;148478;148479;148480;148481;148482;148483;148484;148485;148486;148487;148488;148489;148490;148491 91571;91572;91573;91574;91575;91576;91577;91578;91579;91580;91581;91582;91583;91584;91585;91586 91583 16 GQNTGIAFVSLK Unmodified 1233.6717 0.67173657 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.043 33.424 2 0.0021958 16026 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 82.261 74.889 244610000 7657200 10327000 9396800 1816800 2098800 2303800 23022000 20135000 18020000 8519400 7343600 6840600 16514000 14689000 14815000 2219300 0 0 23539000 22037000 21472000 0 5970000 5876500 8002 1365 7798 148492;148493;148494;148495;148496;148497;148498;148499;148500;148501;148502;148503;148504;148505;148506;148507;148508;148509;148510;148511;148512 91587;91588;91589;91590 91587 4 GQNVPVVFFNK Unmodified 1247.6663 0.66625727 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.213 35.539 2 1.4843E-05 17153 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.93 136.95 3114600000 898130000 819910000 720600000 0 0 0 77895000 70650000 73166000 0 0 0 56776000 50487000 51408000 0 0 0 101280000 101460000 92882000 0 0 0 8003 852 7799 148513;148514;148515;148516;148517;148518;148519;148520;148521;148522;148523;148524 91591;91592;91593;91594;91595;91596;91597;91598;91599;91600;91601;91602 91597 12 GQNVPVVFFNKEPSR Unmodified 1716.8948 0.89475365 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 30.059 28.918 2;3 2.4444E-06 13413 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.7 130.97 154230000 53259000 53619000 39966000 0 0 0 0 0 0 0 0 0 7382600 0 0 0 0 0 0 0 0 0 0 0 8004 852 7800 148525;148526;148527;148528;148529;148530;148531 91603;91604;91605;91606 91604 4 GQPSKPFVGVLSAGINAASPNK Unmodified 2138.1484 0.14840216 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 35.573 33.965 2;3 1.1293E-52 16736 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 262.54 251.9 9170800000 178590000 143770000 172470000 1173000 0 0 946720000 913040000 830400000 0 0 0 879460000 815530000 759080000 0 0 0 1148000000 1177500000 1195900000 3369100 3268800 2565700 8005 895 7801 148532;148533;148534;148535;148536;148537;148538;148539;148540;148541;148542;148543;148544;148545;148546;148547;148548;148549;148550;148551;148552;148553;148554;148555;148556;148557;148558;148559 91607;91608;91609;91610;91611;91612;91613;91614;91615;91616;91617;91618;91619;91620;91621;91622;91623;91624;91625;91626;91627;91628;91629;91630;91631;91632 91608 26 GQPSKPFVGVLSAGINAASPNKELAK Unmodified 2579.4071 0.40713604 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 34.568 33.017 3;4 1.2472E-10 15747 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.31 124.9 725150000 0 8371300 8748800 0 0 1591400 68157000 61033000 71182000 0 0 0 67289000 70826000 54501000 0 0 0 100530000 94225000 110860000 3368400 2312800 2144500 8006 895 7802 148560;148561;148562;148563;148564;148565;148566;148567;148568;148569;148570;148571;148572;148573;148574;148575;148576;148577;148578;148579;148580;148581;148582;148583 91633;91634;91635;91636;91637;91638;91639;91640;91641;91642;91643;91644;91645;91646;91647 91637 15 GQPVLVGTISIEK Unmodified 1339.7711 0.77111627 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.918 34.365 2 9.3896E-06 11512 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 120.77 120.77 1331100000 41535000 56909000 39199000 12354000 11051000 11657000 80210000 79353000 79626000 67651000 75414000 67398000 61555000 53903000 56787000 51380000 36523000 33207000 79288000 85261000 83011000 59736000 53659000 54466000 8007 1057 7803 148584;148585;148586;148587;148588;148589;148590;148591;148592;148593;148594;148595;148596;148597;148598;148599;148600;148601;148602;148603;148604;148605;148606;148607 91648;91649;91650;91651;91652;91653;91654;91655;91656;91657;91658;91659;91660;91661;91662;91663;91664 91649 17 GQQEILLAMATGTGK Unmodified 1516.7919 0.79192806 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 42.189 40.219 2 0.078674 19594 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.893 52.164 35014000 0 0 0 0 0 0 9091700 0 8752900 0 0 0 0 0 0 0 0 0 0 17170000 0 0 0 0 8008 193 7804 148608;148609;148610 91665 91665 0 GQQEQYVALK Unmodified 1162.5982 0.59823728 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 18.248 18.798 2 4.8232E-05 6870 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.8 100.92 260950000 22737000 20121000 18150000 0 0 0 25717000 24157000 22476000 0 1481600 0 21062000 20474000 19125000 0 0 0 20139000 21978000 23329000 0 0 0 8009 1564 7805 148611;148612;148613;148614;148615;148616;148617;148618;148619;148620;148621;148622;148623 91666;91667;91668;91669;91670;91671;91672;91673;91674 91674 9 GQQLNASIIAQTR Unmodified 1398.7579 0.75792582 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.847 25.666 2 8.0454E-09 11704 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 164.43 138.99 152230000 6693800 4937200 5134700 0 0 0 11041000 11983000 14689000 7698500 8088700 4536500 10289000 10781000 9394800 1292200 0 1210100 13778000 13127000 12517000 5042300 0 0 8010 1365 7806 148624;148625;148626;148627;148628;148629;148630;148631;148632;148633;148634;148635;148636;148637;148638;148639;148640;148641 91675;91676;91677;91678;91679;91680 91678 6 GQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLR Unmodified 3669.8387 0.83870192 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 1 1 2 2 2 2 2 2 49.439 48.046 4;5 3.0721E-45 23808 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 224.54 219.73 1397800000 0 11978000 5885000 0 0 0 252470000 209540000 213620000 3317000 3426700 4379700 135770000 147330000 133320000 0 0 0 97208000 93927000 85587000 0 0 0 8011 1087 7807 148642;148643;148644;148645;148646;148647;148648;148649;148650;148651;148652;148653;148654;148655;148656;148657;148658;148659;148660;148661;148662;148663;148664;148665 91681;91682;91683;91684;91685;91686;91687;91688;91689;91690;91691;91692;91693;91694;91695;91696;91697;91698 91681 18 GQSEAIAR Unmodified 830.42463 0.42463001 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 2 2 2 1 2 1 10.558 11.403 2 0.007049 2718 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 97.068 76.72 1963500000 144490000 148890000 145330000 0 0 0 207880000 195210000 192380000 0 0 0 173800000 130760000 125190000 0 0 0 175550000 164360000 159650000 0 0 0 8012 651 7808 148666;148667;148668;148669;148670;148671;148672;148673;148674;148675;148676;148677;148678;148679;148680;148681 91699;91700;91701;91702;91703;91704 91700 1 GQSEDLGLR Unmodified 973.48287 0.48287317 1017 P0AGG2 tesB Acyl-CoA thioesterase 2 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.2 17.784 2 0.00099453 6483 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 95.909 59.514 336780000 35984000 41107000 31002000 713900 0 894980 38843000 30580000 29828000 0 837130 580670 21456000 23081000 0 0 0 0 25933000 28859000 26223000 861560 0 0 8013 1017 7809 148682;148683;148684;148685;148686;148687;148688;148689;148690;148691;148692;148693;148694;148695;148696;148697 91705;91706 91705 1 GQSMAQMALSWLLK Unmodified 1562.7949 0.79490495 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS 1 20.981 21.432 3 0.16731 8552 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 11.045 1.995 36765000 36765000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8014 1958 7810 148698 91707 91707 1 GQTLLVIANLSR Unmodified 1283.7561 0.75613491 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 1 43.447 41.796 2;3 1.5753E-08 20670 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 199.08 188.7 3185900000 8513300 6824300 6990600 912980 813780 745470 317380000 299640000 274210000 0 1956700 1863100 318320000 317180000 330440000 0 0 0 434110000 445770000 411750000 3208200 2892200 2359000 8015 1324 7811 148699;148700;148701;148702;148703;148704;148705;148706;148707;148708;148709;148710;148711;148712;148713;148714;148715;148716;148717;148718;148719;148720;148721;148722;148723;148724;148725;148726;148727 91708;91709;91710;91711;91712;91713;91714;91715;91716;91717;91718;91719;91720;91721;91722;91723;91724;91725;91726;91727 91711 18 GQTLTQATSDAQGHVQLENDK Unmodified 2240.0669 0.066916951 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 20.801 21.062 3 5.4229E-05 8586 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 80.98 79.553 34864000 0 0 0 0 0 0 5759500 4844700 8293100 0 0 0 0 0 0 0 0 0 3798600 5377200 6790500 0 0 0 8016 1877 7812 148728;148729;148730;148731;148732;148733 91728 91728 1 GQTLTQATSDAQGHVQLENDKNAALLLAR Unmodified 3062.5745 0.57448873 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 34.055 31.969 4 6.2981E-12 12706 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 132.35 130.52 46518000 0 0 0 1210600 0 0 0 0 0 11081000 8294700 11094000 0 0 0 0 0 0 0 0 0 7125700 3841400 3870900 8017 1877 7813 148734;148735;148736;148737;148738;148739;148740 91729;91730;91731;91732 91729 4 GQTPAQK Unmodified 728.3817 0.38170256 811 P0ADV1 lptA Lipopolysaccharide export system protein LptA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 3 2 2 2 4 2 4.7845 5.6551 2 0.0063224 1283 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.957 33.96 412490000 51012000 49402000 40947000 7021100 5688500 0 12486000 21615000 15666000 0 0 0 34032000 22835000 26576000 0 0 0 44006000 40287000 40917000 0 0 0 8018 811 7814 148741;148742;148743;148744;148745;148746;148747;148748;148749;148750;148751;148752;148753;148754;148755;148756;148757;148758;148759;148760;148761;148762;148763;148764;148765;148766 91733;91734;91735;91736;91737;91738;91739;91740;91741;91742;91743;91744 91741 12 GQTTIPAPVR Unmodified 1038.5822 0.58219329 1110 P15373 prlF Antitoxin PrlF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.397 19.046 2 0.020134 7127 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 62.338 50.978 60523000 7648500 7317200 5979600 0 0 263750 0 4807800 7320400 0 0 0 4217100 2917200 3753600 0 0 0 5445200 4936800 5915400 0 0 0 8019 1110 7815 148767;148768;148769;148770;148771;148772;148773;148774;148775;148776;148777;148778 91745;91746 91745 0 GQTVLDLAGGTGDLTAK Unmodified 1615.8417 0.84171503 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.878 37.02 2 6.6816E-19 18236 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 192.14 187.25 468130000 36009000 25074000 27423000 0 1944100 2745200 41917000 39937000 37251000 7327600 7369600 7821100 28206000 27935000 31253000 0 0 0 50572000 48572000 43089000 3684800 0 0 8020 408 7816 148779;148780;148781;148782;148783;148784;148785;148786;148787;148788;148789;148790;148791;148792;148793;148794;148795;148796;148797 91747;91748;91749;91750;91751;91752;91753;91754;91755;91756;91757 91751 9 GQTVWFNAWGGDTAINR Unmodified 1891.8965 0.89654457 1837 P76223 ynjB Protein YnjB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 47.847 46.46 2 6.5197E-11 21718 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 185.59 179.75 44981000 3031300 0 3304200 0 0 0 0 4633900 4460900 0 0 0 5044600 5198500 3358300 0 0 0 6493400 5255900 4199800 0 0 0 8021 1837 7817 148798;148799;148800;148801;148802;148803;148804;148805;148806;148807 91758 91758 1 GQVLAKPGTIK Unmodified 1110.6761 0.67609367 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 12.645 13.484 2;3 0.00018257 3917 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 142.98 139.57 900370000 70901000 72047000 34464000 0 0 0 101800000 89913000 93755000 0 0 0 68949000 59549000 74287000 0 0 0 82908000 77956000 73850000 0 0 0 8022 1048 7818 148808;148809;148810;148811;148812;148813;148814;148815;148816;148817;148818;148819;148820;148821;148822;148823;148824;148825;148826;148827;148828;148829;148830 91759;91760;91761;91762;91763;91764;91765;91766;91767;91768;91769;91770;91771;91772;91773;91774;91775;91776 91762 18 GQVLAKPGTIKPHTK Unmodified 1573.9304 0.93041088 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 2 2 2 3 3 3 2 1 1 3 3 3 3 2 2 11.326 12.025 2;3;4 1.4931E-11 3131 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.16 161.87 21814000000 1786900000 990180000 1177600000 155780000 164070000 231310000 2100100000 1802400000 1904100000 106780000 85815000 104420000 1663300000 1500200000 1853300000 70898000 28571000 0 2173100000 1809700000 1895200000 105660000 46833000 58254000 8023 1048 7819 148831;148832;148833;148834;148835;148836;148837;148838;148839;148840;148841;148842;148843;148844;148845;148846;148847;148848;148849;148850;148851;148852;148853;148854;148855;148856;148857;148858;148859;148860;148861;148862;148863;148864;148865;148866;148867;148868;148869;148870;148871;148872;148873;148874;148875;148876;148877;148878;148879;148880;148881;148882;148883;148884;148885;148886;148887;148888;148889;148890;148891;148892 91777;91778;91779;91780;91781;91782;91783;91784;91785;91786;91787;91788;91789;91790;91791;91792;91793;91794;91795;91796;91797;91798;91799;91800;91801;91802;91803;91804;91805;91806;91807;91808;91809;91810;91811;91812;91813;91814;91815;91816;91817;91818;91819;91820;91821;91822;91823;91824;91825;91826;91827;91828;91829 91800 53 GQVLIDGVDIAK Unmodified 1226.6871 0.68705229 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.794 34.25 2 0.00010898 15856 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 105.86 96.525 696230000 48947000 39088000 44050000 16252000 16482000 16547000 45155000 42986000 41131000 22681000 18271000 19447000 25871000 24531000 24354000 6969300 4486200 4341000 58306000 58090000 64354000 17949000 19296000 16649000 8024 1094 7820 148893;148894;148895;148896;148897;148898;148899;148900;148901;148902;148903;148904;148905;148906;148907;148908;148909;148910;148911;148912;148913;148914;148915;148916 91830;91831;91832;91833;91834;91835;91836;91837;91838;91839;91840;91841;91842;91843;91844;91845;91846;91847;91848;91849 91847 20 GQVLPIGGLK Unmodified 980.60187 0.6018661 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.996 30.623 2 0.0037036 11720 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 71.501 70.857 1274200000 89465000 82932000 73162000 3574400 2661500 2413000 104610000 100090000 104290000 24975000 23857000 21341000 62977000 58801000 62535000 83103000 52765000 63232000 67960000 78405000 77044000 10078000 12038000 11916000 8025 536 7821 148917;148918;148919;148920;148921;148922;148923;148924;148925;148926;148927;148928;148929;148930;148931;148932;148933;148934;148935;148936;148937;148938;148939;148940 91850;91851;91852;91853;91854;91855;91856;91857;91858;91859;91860;91861;91862;91863;91864;91865;91866;91867;91868 91853 19 GQYGHVVIDMYPLEPGSNPK Unmodified 2200.0623 0.062289266 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 37.614 35.972 2;3 1.8355E-24 17378 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 254.38 246.84 23064000000 2220600000 1859500000 1817600000 15367000 14016000 17913000 1732000000 1879400000 1846700000 10235000 6089100 7799800 1781100000 1429600000 1516000000 10928000 8388100 9585300 2378900000 2299400000 2171700000 9198700 11756000 10308000 8026 264 7822 148941;148942;148943;148944;148945;148946;148947;148948;148949;148950;148951;148952;148953;148954;148955;148956;148957;148958;148959;148960;148961;148962;148963;148964;148965;148966;148967;148968;148969;148970;148971;148972;148973;148974;148975;148976;148977;148978;148979 91869;91870;91871;91872;91873;91874;91875;91876;91877;91878;91879;91880;91881;91882;91883;91884;91885;91886;91887;91888;91889;91890;91891;91892;91893;91894;91895;91896;91897;91898;91899;91900 91880 32 GQYGHVVIDMYPLEPGSNPK Oxidation (M) 2216.0572 0.057203888 264 P0A6M8 fusA Elongation factor G yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 2 3 2 3 2 3 31.823 30.44 3 5.1446E-06 14462 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 88.548 87.811 443870000 0 28729000 38027000 0 0 0 52902000 36607000 30574000 0 0 0 28976000 40280000 26242000 0 0 0 49335000 49454000 62739000 0 0 0 8027 264 7822 148980;148981;148982;148983;148984;148985;148986;148987;148988;148989;148990;148991;148992;148993;148994;148995;148996;148997;148998;148999;149000;149001;149002;149003;149004;149005;149006 91901;91902;91903;91904;91905;91906;91907;91908;91909;91910;91911;91912;91913;91914;91915;91916;91917;91918 91910 112 13 GQYTAGFAQGK Unmodified 1126.5407 0.5407224 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.219 17.064 2 2.6308E-06 6139 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 155.1 131.25 1507700000 110770000 122250000 105580000 772830 746540 632330 169840000 184020000 173390000 0 0 0 98859000 96805000 94495000 0 0 0 142430000 114820000 92252000 0 0 0 8028 702 7823 149007;149008;149009;149010;149011;149012;149013;149014;149015;149016;149017;149018;149019;149020;149021 91919;91920;91921;91922;91923;91924;91925;91926;91927;91928;91929 91919 11 GQYVLVVDGSIPLK Unmodified 1486.8395 0.83953018 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 44.782 43.067 2 0.00018973 20013 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 99.522 97.486 141630000 0 0 0 0 0 0 21894000 23168000 21531000 969860 0 1386000 12945000 13371000 13741000 0 0 0 10906000 10808000 10912000 0 0 0 8029 1739 7824 149022;149023;149024;149025;149026;149027;149028;149029;149030;149031;149032 91930;91931;91932;91933;91934;91935;91936 91936 4 GRAPLYPDDILWNFEK Unmodified 1932.9734 0.9733979 123 P06610 btuE Vitamin B12 transport periplasmic protein BtuE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 47.853 46.474 3 9.0207E-05 22672 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 77.359 73.173 87681000 12615000 14664000 15155000 0 0 0 0 9868400 6707100 0 0 0 4304900 3189100 3021700 0 0 0 6074600 6843100 5239000 0 0 0 8030 123 7825 149033;149034;149035;149036;149037;149038;149039;149040;149041;149042;149043 91937;91938;91939;91940;91941 91938 3 GRAPTGEPAAAAEMTK Unmodified 1556.7617 0.76169057 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 13.861 14.643 2;3 2.1163E-23 4657 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 203.11 182.68 835410000 41612000 40240000 33662000 496810 0 0 209910000 218240000 199670000 2434700 0 2698500 11011000 9832300 10578000 0 0 0 20383000 16758000 17875000 0 0 0 8031 1265 7826 149044;149045;149046;149047;149048;149049;149050;149051;149052;149053;149054;149055;149056;149057;149058;149059;149060;149061;149062;149063;149064;149065;149066;149067;149068;149069;149070;149071 91942;91943;91944;91945;91946;91947;91948;91949;91950 91945 9 GRDFAFAK Unmodified 910.4661 0.4661009 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.932 15.576 2 0.0061071 5196 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.318 60.015 98326000 0 0 3328000 0 0 432930 12632000 12291000 12969000 5570900 3912500 3833300 7647500 8617300 7447400 0 0 0 4879800 7432500 7331300 0 0 0 8032 664 7827 149072;149073;149074;149075;149076;149077;149078;149079;149080;149081;149082;149083;149084;149085 91951;91952;91953 91953 3 GREPLAGVHAYYDILSEAGCEVDIWR Unmodified 2975.4236 0.42359074 1823 P76145 tam Trans-aconitate 2-methyltransferase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.151 50.904 4 4.8482E-07 25045 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 99.537 97.064 124420000 20178000 23020000 21636000 0 0 0 8868500 10294000 8563800 0 0 0 3615400 4245600 6415400 0 0 0 5623900 5757800 6206300 0 0 0 8033 1823 7828 149086;149087;149088;149089;149090;149091;149092;149093;149094;149095;149096;149097 91954;91955 91954 2 GREPQLDAMLEHYGIK Unmodified 1855.9251 0.9250675 1298 P27298 prlC Oligopeptidase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 36.265 34.709 3;4 8.792E-09 16653 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 125.98 123.11 1346200000 156040000 143050000 139970000 0 0 0 120960000 112900000 129970000 0 0 0 76808000 77495000 72681000 0 0 0 105470000 101220000 109680000 0 0 0 8034 1298 7829 149098;149099;149100;149101;149102;149103;149104;149105;149106;149107;149108;149109;149110;149111;149112;149113;149114;149115;149116;149117;149118;149119;149120;149121 91956;91957;91958;91959;91960;91961;91962;91963;91964;91965;91966;91967;91968;91969;91970;91971;91972;91973;91974;91975;91976;91977;91978;91979 91965 24 GREQILK Unmodified 842.4974 0.49740102 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 11.278 11.814 2 0.015935 2210 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 88.029 27.671 313540000 0 5806800 2509400 15084000 0 30469000 11778000 10994000 13519000 40060000 33923000 29153000 8003100 7738500 5598900 2443400 5319900 7181700 10312000 9366200 11236000 18215000 15492000 19343000 8035 595 7830 149122;149123;149124;149125;149126;149127;149128;149129;149130;149131;149132;149133;149134;149135;149136;149137;149138;149139;149140;149141;149142;149143;149144;149145;149146 91980;91981 91980 2 GREYSAMER Unmodified 1097.4924 0.492392 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 11.498 11.963 2;3 0.0013502 2466 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 112.36 88.929 126610000 0 0 0 8942100 4770200 5300800 0 0 0 4588600 3557800 0 1096000 0 0 41061000 29431000 27858000 0 0 0 0 0 0 8036 570 7831 149147;149148;149149;149150;149151;149152;149153;149154;149155;149156;149157;149158;149159;149160 91982;91983;91984;91985 91982 4 GRGPVATVLVR Unmodified 1123.6826 0.68257603 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.066 18.439 2 0.0010391 5738 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 86.898 71.747 49556000 5124700 6918700 5100400 1394000 1885400 0 0 0 0 3465800 2819100 2960800 2622000 2475100 3697700 3682800 2839600 4569500 0 0 0 0 0 0 8037 297 7832 149161;149162;149163;149164;149165;149166;149167;149168;149169;149170;149171;149172;149173;149174 91986;91987;91988 91988 3 GRGYVPASTR Unmodified 1062.557 0.55704117 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 3 3 3 2 3 3 3 3 11.539 11.841 1;2;3 1.3946E-16 2443 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 227.08 195.77 25084000000 0 0 0 25420000 31258000 14420000 0 0 0 1628100000 1488500000 1423900000 0 0 0 5406700000 4060000000 4168000000 0 0 0 2333900000 2122100000 2381900000 8038 383 7833 149175;149176;149177;149178;149179;149180;149181;149182;149183;149184;149185;149186;149187;149188;149189;149190;149191;149192;149193;149194;149195;149196;149197;149198;149199;149200;149201;149202;149203;149204;149205 91989;91990;91991;91992;91993;91994;91995;91996;91997;91998;91999;92000;92001;92002;92003;92004;92005;92006;92007;92008;92009;92010;92011 91989 23 GRHESGSR Unmodified 884.42128 0.42127597 23 CON__Q86YZ3 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 7.6033 7.8162 2 0.0029998 1215 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 106.36 106.36 9104200 0 0 0 0 0 0 0 0 0 2525200 2378400 2247200 0 0 0 0 130690 120260 0 0 0 723030 425030 554380 + 8039 23 7834 149206;149207;149208;149209;149210;149211;149212;149213 92012;92013 92012 2 GRLNVLVNVLGK Unmodified 1280.7929 0.79285476 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 34.958 33.086 2;3 0.00016526 12576 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 95.502 94.998 49416000 0 0 0 3178600 4712200 4644500 0 0 0 0 0 4038500 0 0 0 0 0 0 0 0 0 10626000 11880000 10336000 8040 937 7835 149214;149215;149216;149217;149218;149219;149220;149221;149222;149223;149224;149225;149226;149227 92014;92015;92016;92017;92018;92019;92020 92018 6 GRLTEDNVKDTLR Unmodified 1515.8005 0.80051892 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.579 14.918 3 0.00044609 3913 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 59.294 48.445 84271000 0 0 0 2892100 3553700 3343600 0 0 0 14071000 14200000 11618000 0 0 0 3607400 2761800 2788800 0 0 0 7602000 9823800 8008300 8041 1009 7836 149228;149229;149230;149231;149232;149233;149234;149235;149236;149237;149238;149239 92021 92021 1 GRPIVNLLPLEQDER Unmodified 1747.9581 0.95808219 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 2 1 2 3 3 3 1 1 1 3 3 3 1 1 1 37.478 35.793 2;3 2.4344E-46 17260 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 292.73 283.72 2912800000 217550000 209810000 185720000 11718000 11194000 9619700 241620000 280950000 204490000 60992000 36241000 57423000 190870000 162590000 170650000 21632000 30081000 23688000 251720000 227260000 224610000 27351000 26789000 28220000 8042 882 7837 149240;149241;149242;149243;149244;149245;149246;149247;149248;149249;149250;149251;149252;149253;149254;149255;149256;149257;149258;149259;149260;149261;149262;149263;149264;149265;149266;149267;149268;149269;149270;149271;149272;149273;149274;149275;149276;149277;149278;149279;149280;149281;149282;149283;149284;149285;149286;149287;149288;149289;149290;149291;149292 92022;92023;92024;92025;92026;92027;92028;92029;92030;92031;92032;92033;92034;92035;92036;92037;92038;92039;92040;92041;92042;92043;92044;92045;92046;92047;92048;92049;92050;92051;92052;92053;92054;92055;92056;92057;92058 92049 37 GRPVFQAVR Unmodified 1028.5879 0.58794737 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.196 14.798 2 6.3203E-05 4076 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 152.47 139.48 800580000 35734000 32782000 30850000 13475000 15132000 12281000 27832000 24086000 31722000 21651000 22921000 33917000 27511000 29095000 28505000 17447000 8688300 7457800 78279000 84584000 86679000 42682000 40664000 46601000 8043 215 7838 149293;149294;149295;149296;149297;149298;149299;149300;149301;149302;149303;149304;149305;149306;149307;149308;149309;149310;149311;149312;149313;149314;149315;149316 92059;92060;92061;92062;92063;92064;92065;92066;92067;92068;92069 92061 10 GRQDVVDCEVK Unmodified 1303.619 0.61904908 816 P0ADX1 yhfA Protein YhfA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 12.169 12.908 2;3 4.9084E-07 3640 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.94 143.16 434800000 96587000 93569000 91765000 0 0 0 57371000 0 65217000 0 0 0 30294000 0 0 0 0 0 0 0 0 0 0 0 8044 816 7839 149317;149318;149319;149320;149321;149322;149323;149324;149325 92070;92071;92072;92073;92074;92075;92076;92077 92076 8 GRSHATAQEEILK Unmodified 1438.7528 0.75284044 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 12.187 12.176 2;3 1.8722E-08 2603 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 190.78 181.35 1122000000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 337300000 418230000 366510000 0 0 0 0 0 0 8045 36 7840 149326;149327;149328;149329;149330;149331 92078;92079;92080;92081;92082;92083 92081 6 GRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK Unmodified 3783.7972 0.79715596 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 2 1 1 2 2 2 2 55.398 53.908 3;4 1.1252E-25 26569 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 163.48 162.06 1171700000 79749000 70931000 124910000 0 0 0 103100000 109910000 104370000 0 0 0 56101000 56117000 86036000 0 0 0 122000000 137550000 120920000 0 0 0 8046 869 7841 149332;149333;149334;149335;149336;149337;149338;149339;149340;149341;149342;149343;149344;149345;149346;149347;149348;149349;149350;149351 92084;92085;92086;92087;92088;92089;92090;92091;92092;92093;92094;92095;92096 92093 13 GSAAHGYFQPYK Unmodified 1324.62 0.62003536 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.102 16.918 2;3 1.1549E-05 5940 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.27 149.27 742760000 114450000 105510000 129490000 0 0 0 93249000 89520000 81053000 0 0 0 15725000 12377000 12899000 0 0 0 33730000 27885000 26867000 0 0 0 8047 1174 7842 149352;149353;149354;149355;149356;149357;149358;149359;149360;149361;149362;149363;149364;149365;149366;149367;149368;149369;149370;149371;149372;149373;149374;149375 92097;92098;92099;92100;92101;92102;92103;92104;92105;92106;92107;92108;92109;92110;92111 92107 11 GSAAQIR Unmodified 701.38204 0.38203692 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 3 3 3 2 1 1 2 2 2 2 1 1 3 2 3 10.243 10.704 2 7.0185E-05 2084 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 143.97 92.938 30874000000 0 234900000 211880000 5665800 6089700 4785800 143100000 175360000 168610000 1771200000 1827900000 1630200000 192400000 181390000 199390000 4837000000 5405100000 6025800000 282390000 281570000 222630000 2598500000 2175100000 2293200000 8048 458 7843 149376;149377;149378;149379;149380;149381;149382;149383;149384;149385;149386;149387;149388;149389;149390;149391;149392;149393;149394;149395;149396;149397;149398;149399;149400;149401;149402;149403;149404;149405;149406;149407;149408;149409;149410;149411;149412;149413;149414;149415 92112;92113;92114;92115;92116;92117;92118;92119;92120;92121;92122;92123;92124;92125;92126;92127;92128;92129;92130;92131;92132 92121 16 GSAFGGVK Unmodified 721.37589 0.3758889 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 12.895 13.788 2 0.060917 4137 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 57.471 25.406 196860000 54624000 57979000 58621000 581000 12900000 12159000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8049 1253 7844 149416;149417;149418;149419;149420;149421 92133;92134 92134 2 GSAFSMEER Unmodified 1012.4284 0.42839476 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 18.157 18.749 1;2 8.9344E-06 6876 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.23 163.88 1471600000 88365000 87311000 72697000 457050 698490 310510 102920000 99580000 103250000 0 415190 0 137780000 131560000 122440000 0 0 0 171130000 185750000 166970000 0 0 0 8050 1283 7845 149422;149423;149424;149425;149426;149427;149428;149429;149430;149431;149432;149433;149434;149435;149436;149437;149438;149439;149440;149441;149442;149443;149444;149445;149446;149447;149448;149449 92135;92136;92137;92138;92139;92140;92141;92142;92143;92144;92145;92146;92147 92143 11 GSAIDLPVYSYVEHTR Unmodified 1805.8948 0.89481323 425 P0A8F4 udk Uridine kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 2 2 2 1 1 1 1 1 1 1 1 3 2 2 40.046 38.251 2;3 3.9202E-07 15334 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 135.6 121.69 436520000 28869000 22936000 19720000 6304400 7001300 7378300 0 28591000 26888000 36794000 20641000 19077000 25040000 24649000 27189000 0 7113200 9062100 29469000 27700000 32354000 11765000 9257500 8721900 8051 425 7846 149450;149451;149452;149453;149454;149455;149456;149457;149458;149459;149460;149461;149462;149463;149464;149465;149466;149467;149468;149469;149470;149471;149472;149473;149474;149475;149476;149477;149478;149479;149480;149481;149482 92148;92149;92150;92151;92152;92153;92154;92155;92156;92157;92158;92159;92160;92161;92162;92163;92164;92165;92166;92167;92168 92153 20 GSALINDK Unmodified 816.43413 0.43413207 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 12.467 13.259 2 0.0068948 3874 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.227 30.022 494930000 83476000 59766000 62807000 0 0 0 52967000 55941000 63654000 0 0 0 25859000 0 0 0 0 0 39292000 26513000 24660000 0 0 0 8052 31 7847 149483;149484;149485;149486;149487;149488;149489;149490;149491;149492 92169;92170;92171;92172;92173;92174;92175;92176 92175 3 GSALINDKR Unmodified 972.53524 0.53524309 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.056 11.872 2 5.0607E-05 2988 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.5 127.54 1014300000 109570000 128420000 117350000 0 0 0 84053000 80012000 88155000 0 0 0 73411000 61314000 60724000 0 0 0 67987000 74670000 68642000 0 0 0 8053 31 7848 149493;149494;149495;149496;149497;149498;149499;149500;149501;149502;149503;149504 92177;92178;92179;92180;92181 92179 5 GSANILVMPNMEAAR Unmodified 1572.7752 0.77523214 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 1 1 1 2 1 2 2 1 2 2 2 1 1 39.891 38.187 2;3 1.733E-06 19066 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.08 129.78 1151100000 188730000 146570000 146100000 714240 1299400 1483500 67791000 61942000 74903000 0 0 1495700 63295000 54210000 53143000 0 0 0 93553000 97280000 95621000 1419100 1527000 0 8054 1872 7849 149505;149506;149507;149508;149509;149510;149511;149512;149513;149514;149515;149516;149517;149518;149519;149520;149521;149522;149523;149524;149525;149526;149527;149528;149529;149530;149531 92182;92183;92184;92185;92186;92187;92188;92189;92190;92191 92182 9 GSASAPVVR Unmodified 842.46102 0.46101552 1208 P23522 garL 5-keto-4-deoxy-D-glucarate aldolase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 11.642 12.48 2 0.00066637 3373 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 104.37 70.627 236640000 4979800 0 2591200 0 0 0 47831000 39513000 19644000 0 0 0 39851000 39504000 33323000 0 0 0 9400300 0 0 0 0 0 8055 1208 7850 149532;149533;149534;149535;149536;149537;149538;149539;149540 92192;92193;92194;92195 92192 4 GSASSTDLSPQAIAR Unmodified 1459.7267 0.72668527 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.972 22.416 2 3.3634E-15 9063 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 193.96 191.45 368760000 33768000 40741000 29263000 0 0 0 30697000 33757000 31344000 0 0 0 23401000 23048000 26961000 0 0 0 31312000 34222000 30246000 0 0 0 8056 948 7851 149541;149542;149543;149544;149545;149546;149547;149548;149549;149550;149551;149552 92196;92197;92198;92199;92200;92201;92202;92203;92204;92205;92206;92207 92207 12 GSCGIGGGIGGGSSR Unmodified 1277.5782 0.5782469 6;12 CON__P02533;CON__P08779 no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 15.071 15.451 2 0.00030103 4284 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 75.088 69.606 42576000 0 0 0 1078100 1086500 1224400 0 0 0 11382000 11535000 10086000 0 0 0 820150 0 0 0 0 0 2306400 1540100 1516900 + 8057 6;12 7852 149553;149554;149555;149556;149557;149558;149559;149560;149561;149562 92208;92209;92210 92208 3 GSCQPATK Unmodified 847.3858 0.38580166 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 2 1 1 1 5.2124 6.0816 2 0.00093582 1413 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.88 110.5 319600000 117260000 114760000 0 0 0 0 22551000 18823000 20759000 0 0 0 8361500 0 5214600 0 0 0 6030100 5831900 0 0 0 0 8058 1007 7853 149563;149564;149565;149566;149567;149568;149569;149570;149571;149572;149573 92211;92212;92213;92214;92215;92216 92214 6 GSDELRDK Unmodified 918.44067 0.44067401 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 7.4745 8.1173 2 0.0016422 1750 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.25 97.872 140410000 50242000 46058000 43654000 0 0 0 0 0 0 0 0 104550 0 297740 0 0 0 0 0 0 0 0 0 52267 8059 877 7854 149574;149575;149576;149577;149578;149579;149580;149581 92217;92218;92219;92220 92217 4 GSDGWLR Unmodified 789.37695 0.37695154 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.038 21.216 2 0.0022284 8641 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116 116 244670000 17983000 15337000 12889000 998220 0 0 19798000 22284000 18079000 0 4991700 4825700 13606000 14286000 17411000 0 0 0 27600000 21993000 23765000 3072400 2764800 2982400 8060 1197 7855 149582;149583;149584;149585;149586;149587;149588;149589;149590;149591;149592;149593;149594;149595;149596;149597;149598;149599 92221;92222;92223;92224;92225;92226;92227;92228;92229;92230;92231 92223 11 GSDLVVTAIAEGR Unmodified 1286.683 0.68302954 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 3 3 1 1 1 2 2 3 2 1 2 1 1 1 35.881 34.318 2;3 6.594E-09 16924 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 213.25 204.4 747090000 137260000 159770000 143960000 1246500 1076500 879160 47299000 46991000 50321000 0 0 0 26050000 24149000 22798000 0 0 0 29008000 32098000 24179000 0 0 0 8061 219 7856 149600;149601;149602;149603;149604;149605;149606;149607;149608;149609;149610;149611;149612;149613;149614;149615;149616;149617;149618;149619;149620;149621;149622;149623;149624;149625 92232;92233;92234;92235;92236;92237;92238;92239;92240;92241;92242;92243;92244 92232 13 GSDPEQEWQEIDNK Unmodified 1673.7169 0.71690845 1504 P38051 menF Isochorismate synthase MenF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.53 29.174 2 7.8303E-12 13712 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 178.71 165.36 82225000 8435200 11222000 9572900 0 0 0 7137900 7943400 5681000 0 0 0 3768800 3721700 6083300 0 0 0 6260900 4982500 7416300 0 0 0 8062 1504 7857 149626;149627;149628;149629;149630;149631;149632;149633;149634;149635;149636;149637 92245;92246 92245 2 GSDTNIQQLNEQER Unmodified 1630.7547 0.75469094 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 18.143 17.997 2 5.0877E-08 5398 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 143.97 143.97 10138000 0 0 0 0 0 0 0 0 0 3627900 3305600 3204200 0 0 0 0 0 0 0 0 0 0 0 0 8063 722 7858 149638;149639;149640 92247;92248;92249 92248 3 GSDTQDCFVYR Unmodified 1346.5561 0.55611447 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.64 22.11 2 1.412E-20 9675 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 246.57 241.96 278830000 15891000 12957000 13239000 0 0 0 20456000 21466000 21193000 0 0 0 25843000 27144000 27225000 0 0 0 31092000 31758000 30568000 0 0 0 8064 180 7859 149641;149642;149643;149644;149645;149646;149647;149648;149649;149650;149651;149652 92250;92251;92252;92253;92254;92255;92256;92257;92258;92259;92260;92261 92250 12 GSDYIGDQDAIEYMCK Unmodified 1863.7655 0.7655149 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.894 36.282 2 3.0333E-18 17890 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 183.08 180.76 970260000 57169000 54069000 51811000 17019000 16767000 17450000 37745000 41647000 39119000 15591000 12675000 12118000 60539000 56008000 54867000 6151800 3996300 3388900 117180000 117380000 121470000 20218000 17806000 18067000 8065 698 7860 149653;149654;149655;149656;149657;149658;149659;149660;149661;149662;149663;149664;149665;149666;149667;149668;149669;149670;149671;149672;149673;149674;149675;149676 92262;92263;92264;92265;92266;92267;92268;92269;92270;92271;92272;92273;92274;92275;92276;92277;92278;92279;92280;92281;92282 92265 21 GSENYALTTNQGVR Unmodified 1508.7219 0.72193424 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.302 19.804 2 7.9853E-27 7841 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 242.49 227.34 277450000 42999000 41451000 36612000 0 397880 0 42611000 35288000 33190000 0 0 0 6818400 0 5940400 0 0 0 9596700 11058000 11486000 0 0 0 8066 1174 7861 149677;149678;149679;149680;149681;149682;149683;149684;149685;149686;149687;149688 92283;92284;92285;92286;92287;92288;92289;92290;92291;92292 92283 10 GSEWENLSAPAK Unmodified 1287.6095 0.60953025 1000 P0AG99 secG Protein-export membrane protein SecG yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.349 25.235 2 1.3049E-05 9165 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 127.76 125.49 1193600000 36368000 42621000 42740000 5241000 4991800 4909800 100810000 91352000 100650000 16015000 16088000 20224000 99124000 86998000 99327000 6173100 2609200 2984700 120480000 130670000 119010000 13683000 14348000 16200000 8067 1000 7862 149689;149690;149691;149692;149693;149694;149695;149696;149697;149698;149699;149700;149701;149702;149703;149704;149705;149706;149707;149708;149709;149710;149711;149712 92293;92294;92295;92296;92297;92298;92299;92300;92301;92302;92303;92304;92305;92306;92307;92308;92309;92310;92311;92312;92313;92314 92298 22 GSFESFAQAVR Unmodified 1197.5778 0.57783619 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.089 31.517 2 2.5999E-05 14817 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 133.98 123.95 931750000 210760000 176240000 159100000 2233200 0 0 70802000 64735000 72788000 5786800 0 0 31528000 24825000 28437000 0 0 0 0 38302000 42160000 0 4056500 0 8068 553 7863 149713;149714;149715;149716;149717;149718;149719;149720;149721;149722;149723;149724;149725;149726 92315;92316;92317;92318 92317 4 GSFMFMADLCR Unmodified 1333.5617 0.56173389 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.392 47.069 2 1.61E-07 23281 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 168.8 164.18 464590000 37232000 32099000 30643000 0 0 0 36218000 36975000 36683000 0 0 0 41261000 37370000 32743000 0 0 0 49306000 48403000 45661000 0 0 0 8069 537 7864 149727;149728;149729;149730;149731;149732;149733;149734;149735;149736;149737;149738 92319;92320;92321;92322;92323;92324;92325;92326;92327;92328;92329;92330 92320 12 GSFYLDLYAR Unmodified 1203.5924 0.59242362 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.594 42.079 2 4.9404E-05 20918 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 136.27 117.54 277890000 22127000 21566000 21103000 0 0 0 31628000 33623000 29149000 0 0 0 16920000 14097000 15690000 0 0 0 27175000 24532000 20282000 0 0 0 8070 1298 7865 149739;149740;149741;149742;149743;149744;149745;149746;149747;149748;149749;149750 92331;92332;92333;92334;92335;92336;92337;92338;92339;92340;92341;92342 92331 12 GSGGGSSGGSIGGR Unmodified 1091.4956 0.49556312 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 9.3077 9.6713 2 2.0124E-14 1969 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 188.28 185.93 691890000 0 0 0 8067100 11184000 9391200 0 0 0 174220000 147960000 137840000 0 0 0 8866900 21833000 20099000 0 0 0 54312000 54755000 43367000 + 8071 11 7866 149751;149752;149753;149754;149755;149756;149757;149758;149759;149760;149761;149762 92343;92344;92345;92346;92347;92348;92349;92350;92351;92352;92353;92354 92351 12 GSGGLGGACGGAGFGSR Unmodified 1423.6263 0.62625972 8 CON__P48668;CON__P02538;CON__P04259 yes no 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 19.889 19.644 2 8.1326E-05 6273 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 83.087 83.087 14395000 0 0 0 0 0 0 0 0 0 4840900 5078600 4475900 0 0 0 0 0 0 0 0 0 0 0 0 + 8072 8 7867 149763;149764;149765 92355;92356;92357 92355 3 GSGLTPAQALDK Unmodified 1156.6088 0.60880197 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.093 21.435 2 0.0011946 8445 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.672 60.713 531210000 58008000 49548000 40511000 0 0 0 34477000 30926000 42914000 0 0 0 38622000 37087000 35240000 0 0 0 55484000 57284000 51104000 0 0 0 8073 828 7868 149766;149767;149768;149769;149770;149771;149772;149773;149774;149775;149776;149777 92358 92358 0 GSGLTPAQALDKLDALYEQSVVALR Unmodified 2614.3966 0.39663093 828 P0AE12 amn AMP nucleosidase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.834 53.392 3 2.4125E-10 26228 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.43 120.75 218430000 21420000 24427000 14315000 0 0 0 0 17486000 18226000 0 0 0 24098000 19688000 23589000 0 0 0 29720000 25463000 0 0 0 0 8074 828 7869 149778;149779;149780;149781;149782;149783;149784;149785;149786;149787 92359 92359 1 GSGNIASAPAMSR Unmodified 1217.5823 0.58226964 1438 P36562 cobT Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.709 17.027 2 0.00026354 5835 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.184 76.033 32306000 0 0 0 0 0 0 7474400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4708000 10336000 9786800 8075 1438 7870 149788;149789;149790;149791;149792;149793;149794;149795;149796;149797 92360;92361;92362;92363;92364;92365;92366 92364 7 GSGPYFYLPK Unmodified 1127.5651 0.56514624 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.658 34.919 2 0.0035354 17107 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 72.485 66.332 5451000000 1186400000 1261600000 1188100000 1778000 2054000 1952500 342760000 352980000 318890000 1849800 1219400 1061500 109310000 98065000 81979000 0 0 0 156990000 185140000 158810000 0 0 0 8076 195 7871 149798;149799;149800;149801;149802;149803;149804;149805;149806;149807;149808;149809;149810;149811;149812;149813;149814;149815 92367;92368;92369;92370;92371;92372;92373;92374;92375;92376;92377;92378 92368 12 GSHEYCDVMGR Unmodified 1309.518 0.51795482 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 1 2 2 2 13.953 14.755 2;3 5.7294E-11 4660 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 200.11 200.11 2528000000 244920000 227800000 198130000 0 0 0 230480000 230410000 248640000 0 712330 0 181420000 168380000 170950000 0 0 275360 214050000 205070000 206780000 0 0 0 8077 635 7872 149816;149817;149818;149819;149820;149821;149822;149823;149824;149825;149826;149827;149828;149829;149830;149831;149832;149833;149834;149835;149836;149837;149838;149839;149840;149841 92379;92380;92381;92382;92383;92384;92385;92386;92387;92388;92389;92390;92391;92392;92393;92394;92395;92396;92397;92398 92383 20 GSHIVVPR Unmodified 863.49774 0.49773538 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.404 12.993 2 0.00098544 3181 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 114.78 106.1 1901700000 6410600 0 7835900 1860400 2505600 0 223520000 227640000 203680000 194800000 184980000 202200000 83802000 93234000 72706000 27737000 10020000 11900000 93200000 72534000 79063000 34985000 36546000 30591000 8078 1088 7873 149842;149843;149844;149845;149846;149847;149848;149849;149850;149851;149852;149853;149854;149855;149856;149857;149858;149859;149860;149861;149862;149863 92399;92400;92401;92402;92403;92404;92405;92406 92402 6 GSHLESLAAR Unmodified 1039.5411 0.54105675 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.723 13.564 2 0.0046767 4096 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 66.568 55.694 123870000 13541000 12366000 10588000 0 0 0 10829000 10535000 8757100 0 0 0 10375000 9619700 8805700 0 0 0 9607300 10690000 8159900 0 0 0 8079 389 7874 149864;149865;149866;149867;149868;149869;149870;149871;149872;149873;149874;149875 92407;92408;92409;92410;92411;92412;92413 92411 3 GSIGQLLVNPVP Unmodified 1192.6816 0.68157298 1286 P26648 ftsP Cell division protein FtsP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.064 51.624 2 0.00011366 25264 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 108.98 97.337 67973000 4791900 4402000 5095900 0 0 0 6419900 5519200 5539300 0 0 0 5314200 4962500 4599100 0 0 0 7489300 7529300 6309800 0 0 0 8080 1286 7875 149876;149877;149878;149879;149880;149881;149882;149883;149884;149885;149886;149887 92414;92415;92416;92417 92415 4 GSIPENTVIAGVPAK Unmodified 1451.7984 0.79839365 1493 P37750 wbbJ Putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.137 28.497 2 0.0067096 10838 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 60.255 52.883 150790000 0 0 0 1424200 1275400 1305200 9669500 15103000 9091600 6627800 5921800 5232000 9480200 11336000 8600300 0 0 0 17558000 15731000 19306000 3942500 4980500 4204300 8081 1493 7876 149888;149889;149890;149891;149892;149893;149894;149895;149896;149897;149898;149899;149900;149901;149902;149903;149904;149905 92418 92418 1 GSITEQLLNAR Unmodified 1200.6463 0.64625011 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 2 1 1 1 1 1 2 1 2 1 32.945 31.515 2;3 3.8986E-08 15120 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 206.78 192.14 1407700000 0 0 0 2295600 0 1749500 10875000 185200000 180510000 4401700 3449500 0 301240000 10298000 13840000 5273400 3986500 4568300 338160000 11181000 326390000 0 4317000 0 8082 38 7877 149906;149907;149908;149909;149910;149911;149912;149913;149914;149915;149916;149917;149918;149919;149920;149921;149922;149923;149924;149925;149926;149927 92419;92420;92421;92422;92423;92424;92425;92426;92427;92428;92429;92430;92431;92432 92422 13 GSLAAMVVAAER Unmodified 1173.6176 0.61759251 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.236 34.679 2 3.9028E-06 15989 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 134.57 111.14 245930000 18957000 18852000 16810000 0 0 0 21204000 23343000 23320000 0 0 0 16867000 16662000 16578000 0 0 0 24932000 20491000 27916000 0 0 0 8083 849 7878 149928;149929;149930;149931;149932;149933;149934;149935;149936;149937;149938;149939 92433;92434;92435;92436;92437 92436 5 GSLAYAEDPCGAEQGFSGR Unmodified 1970.8429 0.84285402 881 P0AES2 gudD Glucarate dehydratase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 30.581 29.229 2 4.3657E-14 13934 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.11 150.11 81813000 8777200 10740000 9818500 0 0 0 9713500 10299000 11309000 0 0 0 6148600 5727900 4903300 0 0 0 0 0 4376600 0 0 0 8084 881 7879 149940;149941;149942;149943;149944;149945;149946;149947;149948;149949 92438;92439;92440 92438 3 GSLGELK Unmodified 702.3912 0.39120462 216 P09549 dedD Cell division protein DedD yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4.6656 5.5624 2 0.073945 571 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 58.661 10.419 2430200000 41929000 97031000 30783000 623870 508760 590230 34099000 32833000 33512000 0 0 0 250560000 281550000 255730000 0 0 0 453920000 475370000 441140000 0 0 0 8085 216 7880 149950;149951;149952;149953;149954;149955;149956;149957;149958;149959;149960;149961;149962;149963;149964 92441;92442;92443;92444;92445;92446;92447;92448;92449 92444 9 GSLGGGFSSGGFSGGSFSR Unmodified 1706.7649 0.76486169 13 CON__P13645 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.22 33.671 2 1.186E-09 13438 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 151.54 151.54 326130000 0 0 0 18243000 18153000 17764000 0 0 0 25258000 25516000 25858000 0 0 0 12957000 8250800 6891000 0 0 0 59556000 54787000 52897000 + 8086 13 7881 149965;149966;149967;149968;149969;149970;149971;149972;149973;149974;149975;149976 92450;92451;92452;92453;92454;92455;92456;92457;92458;92459;92460;92461 92453 12 GSLLIMDHR Unmodified 1040.5437 0.54369929 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 22.563 22.039 2 0.00033848 9594 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.5 107.67 172100000 0 0 0 0 0 0 48383000 39287000 32628000 0 0 3496200 27304000 20999000 0 0 0 0 0 0 0 0 0 0 8087 506 7882 149977;149978;149979;149980;149981;149982 92462;92463;92464 92462 3 GSLLLSR Unmodified 744.44939 0.4493882 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.8 21.718 2 0.0020767 6453 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 118.69 40.967 142790000 8902400 7376500 5584000 13603000 10292000 11232000 5433300 3421900 0 6224300 5085000 6198500 5059400 4218500 2885600 1522100 1611500 1497100 6577200 7033000 9008000 6982200 6030800 7015500 8088 1899 7883 149983;149984;149985;149986;149987;149988;149989;149990;149991;149992;149993;149994;149995;149996;149997;149998;149999;150000;150001;150002;150003;150004;150005 92465;92466;92467;92468;92469;92470;92471 92471 7 GSLLLTDDAR Unmodified 1059.556 0.55603811 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.082 25.902 2 1.1292E-06 11784 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 168.27 130.13 914590000 72677000 75696000 64110000 654460 493110 0 49591000 51988000 51935000 0 0 0 107130000 87283000 92153000 0 0 0 92716000 79457000 88715000 0 0 0 8089 951 7884 150006;150007;150008;150009;150010;150011;150012;150013;150014;150015;150016;150017;150018;150019 92472;92473;92474;92475;92476;92477;92478;92479;92480;92481;92482;92483 92476 12 GSLPIALDEVITDGHK Unmodified 1663.8781 0.87810054 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 2 1 1 42.702 40.919 2;3 4.8535E-11 19797 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 156.14 136.38 4827100000 443380000 413070000 416210000 17489000 15537000 20504000 759940000 653520000 543830000 16366000 11590000 16877000 258150000 244460000 237320000 0 0 2393500 244580000 233830000 239240000 11700000 12134000 14995000 8090 548 7885 150020;150021;150022;150023;150024;150025;150026;150027;150028;150029;150030;150031;150032;150033;150034;150035;150036;150037;150038;150039;150040;150041;150042;150043;150044;150045;150046;150047;150048;150049;150050;150051;150052;150053;150054;150055;150056;150057;150058 92484;92485;92486;92487;92488;92489;92490;92491;92492;92493;92494;92495;92496;92497;92498;92499;92500;92501;92502;92503;92504;92505;92506 92501 23 GSLPIALDEVITDGHKR Unmodified 1819.9792 0.97921156 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 4 2 3 3 3 3 1 1 1 3 3 3 3 3 3 36.413 34.712 2;3;4 7.767E-14 12179 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 167.44 162.93 3582700000 220900000 208710000 153530000 140970000 134560000 106720000 300980000 331380000 340960000 174870000 161880000 153300000 100440000 85822000 91157000 8422900 7901300 12528000 120090000 101990000 109700000 160280000 168280000 187300000 8091 548 7886 150059;150060;150061;150062;150063;150064;150065;150066;150067;150068;150069;150070;150071;150072;150073;150074;150075;150076;150077;150078;150079;150080;150081;150082;150083;150084;150085;150086;150087;150088;150089;150090;150091;150092;150093;150094;150095;150096;150097;150098;150099;150100;150101;150102;150103;150104;150105;150106;150107;150108;150109;150110;150111;150112;150113;150114;150115;150116;150117;150118;150119;150120;150121;150122;150123;150124 92507;92508;92509;92510;92511;92512;92513;92514;92515;92516;92517;92518;92519;92520;92521;92522;92523;92524;92525;92526;92527;92528;92529;92530;92531;92532;92533;92534;92535;92536;92537;92538;92539;92540;92541;92542;92543;92544;92545;92546;92547;92548;92549;92550;92551 92541 45 GSLVNDK Unmodified 731.38137 0.38136821 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.571 12.098 2 0.011871 2985 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 85.357 28.254 881410000 0 0 0 11788000 0 0 86404000 76322000 86604000 11458000 8627100 9883600 75936000 81967000 66934000 1667000 1544700 5508300 102960000 103810000 95176000 21354000 16737000 16723000 8092 59 7887 150125;150126;150127;150128;150129;150130;150131;150132;150133;150134;150135;150136;150137;150138;150139;150140;150141;150142;150143;150144 92552;92553;92554;92555;92556;92557 92553 6 GSLYIATTHTQAR Unmodified 1417.7314 0.73137672 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 2 1 2 2 1 2 1 1 1 2 1 15.286 15.939 2;3 2.6202E-05 4299 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 106.29 98.07 208340000 44481000 42987000 43292000 527650 411280 0 15337000 0 0 1053600 0 0 9187900 7636800 5405900 9063300 4725600 6550300 3670000 9357100 4655100 0 0 0 8093 515 7888 150145;150146;150147;150148;150149;150150;150151;150152;150153;150154;150155;150156;150157;150158;150159;150160;150161;150162;150163;150164;150165;150166;150167;150168 92558;92559;92560;92561;92562;92563;92564 92558 7 GSLYVTR Unmodified 794.42865 0.42865276 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 15.012 15.73 2 0.11154 5306 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 51.787 24.825 73282000 15637000 13549000 14590000 0 0 0 0 15228000 12488000 0 0 0 0 0 0 0 0 0 1789900 0 0 0 0 0 8094 1316 7889 150169;150170;150171;150172;150173;150174 92565 92565 1 GSMASVAFHLNTQLNNGESPK Unmodified 2201.0535 0.053515494 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 33.596 31.677 3 7.5096E-07 12262 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 96.79 96.524 55024000 0 0 0 0 0 0 11438000 9819300 6713300 4550300 5914700 6187400 0 0 7328800 0 0 0 0 0 3072300 0 0 0 8095 1716 7890 150175;150176;150177;150178;150179;150180;150181;150182 92566;92567 92566 2 GSMDAHEVNSLR Unmodified 1314.5986 0.59864799 977 P0AG14 sohB Probable protease SohB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.412 15.107 2 0.00074253 5011 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 80.916 72.985 55638000 2677800 0 0 0 0 0 4766000 5620500 6653600 499300 0 0 5911400 4795400 4214000 0 0 0 6764300 6581700 7154000 0 0 0 8096 977 7891 150183;150184;150185;150186;150187;150188;150189;150190;150191;150192;150193 92568;92569;92570;92571;92572;92573 92569 6 GSMDAHEVNSLREEITAVLAAFKPQDQVVLR Unmodified 3422.7616 0.76163757 977 P0AG14 sohB Probable protease SohB yes yes 0 0 2 By matching By matching By MS/MS 1 1 1 54.39 54.445 5 0.072379 20492 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 33.657 32.015 22835000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2571100 10977000 9287300 0 0 0 0 0 0 8097 977 7892 150194;150195;150196 92574 92574 1 GSMEEWQAMGVMNYEMESATLLTMCASQGLR Unmodified 3510.5056 0.50562386 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.799 54.342 3 3.4657E-33 25868 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 197.1 197.1 514910000 19639000 19538000 14553000 0 0 0 28790000 0 46850000 0 0 0 57154000 67191000 71761000 0 0 0 48911000 74221000 66298000 0 0 0 8098 1079 7893 150197;150198;150199;150200;150201;150202;150203;150204;150205;150206;150207 92575;92576;92577 92577 3 GSMIEVLHSNFIR Unmodified 1501.7711 0.77113304 941 P0AFH2 oppB Oligopeptide transport system permease protein OppB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 38.572 36.716 2;3 1.1232E-05 12915 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 117.67 115.49 382960000 61058000 68703000 68189000 14129000 13884000 13333000 11677000 12667000 11130000 6327700 5238700 5050500 7984900 15512000 9101800 0 0 0 14181000 15953000 16189000 4793700 3114600 4746400 8099 941 7894 150208;150209;150210;150211;150212;150213;150214;150215;150216;150217;150218;150219;150220;150221;150222;150223;150224;150225;150226;150227;150228;150229;150230;150231;150232;150233 92578;92579;92580;92581;92582;92583;92584 92580 7 GSMMIEGR Unmodified 879.39426 0.39425786 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.47 17.072 2 0.00075373 6037 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 124.59 124.59 207510000 8272100 0 0 0 0 2082800 24829000 31047000 29871000 7006200 2119000 3729300 13522000 15045000 11385000 0 0 0 17604000 16281000 18332000 0 2413700 3968800 8100 27 7895 150234;150235;150236;150237;150238;150239;150240;150241;150242;150243;150244;150245;150246;150247;150248;150249 92585;92586;92587;92588;92589;92590;92591;92592;92593 92589 9 GSMWHIR Unmodified 885.42794 0.42794125 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.492 18.174 2 0.020298 6187 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 76.847 76.847 508430000 44752000 46601000 41878000 0 0 0 39054000 32391000 35426000 0 0 0 32370000 41664000 40217000 0 0 0 46130000 51400000 56543000 0 0 0 8101 158 7896 150250;150251;150252;150253;150254;150255;150256;150257;150258;150259;150260;150261 92594 92594 1 GSNDFVTNVDK Unmodified 1194.5517 0.55168102 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.967 20.261 2 0.00012134 8106 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 115.78 107.56 730430000 50634000 47341000 40358000 1440900 1252000 1288500 63674000 68578000 72830000 3697700 3446900 2461000 49880000 47909000 47173000 0 0 0 68542000 81579000 72269000 2417600 1844100 1811100 8102 787 7897 150262;150263;150264;150265;150266;150267;150268;150269;150270;150271;150272;150273;150274;150275;150276;150277;150278;150279;150280;150281;150282 92595;92596;92597;92598;92599;92600;92601;92602;92603;92604;92605;92606 92598 12 GSPAAQAGLQK Unmodified 1026.5458 0.54580778 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.86 12.691 2 0.0074899 3599 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 64.42 58.679 344890000 36546000 33682000 30625000 5362000 5221600 0 41153000 33391000 28728000 0 0 0 23768000 18739000 18560000 0 0 0 20773000 20839000 22252000 0 5254500 0 8103 1507 7898 150283;150284;150285;150286;150287;150288;150289;150290;150291;150292;150293;150294;150295;150296;150297 92607;92608 92607 0 GSPIQPTLDSLK Unmodified 1254.682 0.68196691 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 31.956 30.594 2 1.817E-05 14413 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 123.96 116.9 1343600000 449890000 399230000 379930000 0 0 0 9800000 11428000 11125000 0 0 0 9861400 9925900 0 0 0 0 22643000 18210000 21589000 0 0 0 8104 217 7899 150298;150299;150300;150301;150302;150303;150304;150305;150306;150307;150308 92609;92610;92611;92612;92613 92611 4 GSQEMHIGIAEIVAGNNDLSSR Unmodified 2297.107 0.10700763 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 39.953 38.233 3 0.0039284 13383 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 38.724 35.004 6629500 0 0 0 2005600 2383500 2240300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8105 152 7900 150309;150310;150311 92614;92615;92616 92616 3 GSQNRDEITK Unmodified 1146.5629 0.56291441 1075 P12008 aroC Chorismate synthase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 6.2055 7.0752 2 0.0006917 1635 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.52 56.106 47467000 10564000 11130000 13654000 0 0 0 0 0 0 0 0 0 2049800 2091800 2434900 0 0 0 2033200 2025600 1483700 0 0 0 8106 1075 7901 150312;150313;150314;150315;150316;150317;150318;150319;150320 92617;92618;92619 92619 3 GSQQLQLKPGESAFIAANESPVTVK Unmodified 2598.3653 0.3653308 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.859 34.302 2;3 6.9543E-22 16797 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 219.06 207.79 1721400000 134500000 132230000 109520000 0 0 0 183720000 184210000 173350000 0 0 0 148150000 130720000 138010000 0 0 0 131440000 124770000 130830000 0 0 0 8107 56 7902 150321;150322;150323;150324;150325;150326;150327;150328;150329;150330;150331;150332;150333;150334;150335;150336;150337;150338;150339;150340;150341;150342;150343;150344 92620;92621;92622;92623;92624;92625;92626;92627;92628;92629;92630;92631;92632;92633;92634 92623 15 GSQQSVEQAYAEAGQPQHK Unmodified 2041.9453 0.94534525 1139 P17443 murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.518 17.207 3 0.12358 5128 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 24.3 24.213 41874000 0 2915000 0 0 0 0 0 2657800 4293300 5437000 0 0 2720800 2863400 3037700 0 0 0 6662000 5807100 5479400 0 0 0 8108 1139 7903 150345;150346;150347;150348;150349;150350;150351;150352;150353;150354 92635 92635 1 GSQVIKAMMK Oxidation (M) 1107.578 0.57803589 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 1 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 18.412 18.892 2 0.057206 7022 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 49.097 31.857 59189000 7102400 9744700 9176200 0 0 0 0 0 2346300 2028900 0 1663200 4378500 0 2971500 0 0 0 6301900 6326100 7148900 0 0 0 8109 297 7904 150355;150356;150357;150358;150359;150360;150361;150362;150363;150364;150365 92636 92636 1 GSSFTLSVVHLHEAEPK Unmodified 1836.937 0.9370124 1149 P18196 minC Septum site-determining protein MinC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 2 2 2 2 1 2 2 2 27.456 26.362 3;4 0.00012188 11982 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 52.784 52.47 382450000 48579000 48343000 44176000 845540 1093600 2966700 14747000 10374000 26581000 0 0 0 24423000 26562000 23243000 0 0 1044200 36764000 36149000 36554000 0 0 0 8110 1149 7905 150366;150367;150368;150369;150370;150371;150372;150373;150374;150375;150376;150377;150378;150379;150380;150381;150382;150383;150384;150385;150386;150387;150388;150389;150390;150391;150392 92637;92638;92639;92640;92641;92642;92643;92644;92645;92646;92647;92648;92649;92650 92643 13 GSSGGGCFGGSSGGYGGLGGFGGGSFR Unmodified 2341.9771 0.97705609 13 CON__P13645 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 40.638 38.52 2;3 1.031E-10 15018 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 175.39 170.5 161200000 0 0 0 10018000 13295000 11306000 0 0 0 20968000 11698000 10962000 0 0 0 0 0 0 0 0 0 28944000 23105000 30906000 + 8111 13 7906 150393;150394;150395;150396;150397;150398;150399;150400;150401;150402;150403;150404;150405;150406;150407;150408;150409;150410 92651;92652;92653;92654;92655;92656;92657;92658;92659;92660;92661;92662;92663;92664;92665;92666;92667;92668 92662 18 GSSLLPK Unmodified 700.41194 0.41194006 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.003 16.833 2 0.064661 5841 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.358 29.69 235160000 25622000 27385000 29838000 0 0 292600 21785000 20938000 20482000 0 0 0 13380000 9763300 11390000 0 0 0 19707000 18139000 16444000 0 0 0 8112 328 7907 150411;150412;150413;150414;150415;150416;150417;150418;150419;150420;150421;150422;150423 92669;92670;92671;92672;92673 92672 5 GSSLMFLKPGMQVPVSQLIR Unmodified 2187.1908 0.19080102 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 48.704 47.5 3 4.0491E-06 19057 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 88.755 85.564 373500000 9877900 11109000 11468000 5617200 4349500 5520800 0 19999000 0 23996000 26543000 28937000 22630000 20467000 21970000 11770000 9765100 9819900 36422000 34797000 0 21649000 18731000 18066000 8113 844 7908 150424;150425;150426;150427;150428;150429;150430;150431;150432;150433;150434;150435;150436;150437;150438;150439;150440;150441;150442;150443;150444;150445 92674;92675;92676;92677;92678;92679;92680;92681 92678 8 GSSLQQGFQKPAQAVNR Unmodified 1814.9387 0.93874373 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 1 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 17.019 17.475 2;3 2.8321E-24 6256 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 257.13 250.6 556960000 102630000 90891000 71727000 1205700 0 0 32463000 4092200 5868500 12236000 11202000 9180700 20964000 22584000 24634000 14700000 10229000 10122000 53960000 26468000 24656000 2838000 1892000 2417700 8114 297 7909 150446;150447;150448;150449;150450;150451;150452;150453;150454;150455;150456;150457;150458;150459;150460;150461;150462;150463;150464;150465;150466;150467;150468;150469;150470;150471;150472;150473;150474;150475;150476;150477;150478;150479;150480;150481;150482;150483 92682;92683;92684;92685;92686;92687;92688;92689;92690;92691;92692;92693;92694;92695;92696;92697;92698;92699;92700;92701 92693 20 GSSMASDAFFPFR Unmodified 1418.6289 0.62888548 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.137 46.764 2 2.8392E-09 22846 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 174.73 170.43 442610000 123250000 121280000 106950000 0 0 0 8876100 8353200 7954400 0 0 0 10828000 9633600 10018000 0 0 0 12778000 11627000 11072000 0 0 0 8115 1111 7910 150484;150485;150486;150487;150488;150489;150490;150491;150492;150493;150494;150495 92702;92703;92704;92705;92706;92707;92708;92709;92710;92711;92712 92707 10 GSSMASDAFFPFR Oxidation (M) 1434.6238 0.6238001 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 1 0 By MS/MS By MS/MS 1 1 43.95 42.595 2 0.04807 20654 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 42.001 41.694 9046100 5447000 0 3599000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8116 1111 7910 150496;150497 92713;92714 92714 0 GSSVMFLKPGDQVSVADLNK Unmodified 2091.067 0.067040293 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.926 36.257 3 5.6353E-07 17869 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.269 95.171 383850000 15901000 15476000 13385000 7084600 6229300 6523900 31870000 36641000 43625000 24213000 23194000 17374000 19001000 16509000 20421000 4569200 5287600 0 20133000 20271000 20595000 0 7450500 8098800 8117 189 7911 150498;150499;150500;150501;150502;150503;150504;150505;150506;150507;150508;150509;150510;150511;150512;150513;150514;150515;150516;150517;150518;150519 92715;92716;92717;92718;92719;92720;92721;92722;92723;92724;92725;92726;92727 92716 13 GSTLLGHDPADPLKQPVEAEK Unmodified 2201.1328 0.13281167 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 25.666 24.584 3;4 3.5279E-15 11370 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.02 131.54 531020000 39058000 51833000 51280000 0 0 0 43862000 45870000 53189000 0 0 0 18173000 37259000 30905000 0 0 0 51862000 58979000 48747000 0 0 0 8118 1482 7912 150520;150521;150522;150523;150524;150525;150526;150527;150528;150529;150530;150531;150532;150533;150534;150535;150536;150537;150538;150539;150540;150541;150542 92728;92729;92730;92731;92732;92733;92734;92735;92736 92728 9 GSVAVLIK Unmodified 785.50109 0.50108942 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.788 22.214 2 0.039115 9464 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.799 22.107 192210000 32966000 29706000 31668000 0 0 0 16189000 13006000 15707000 0 0 0 8052900 6943700 6782000 0 0 0 11039000 8539100 11612000 0 0 0 8119 734 7913 150543;150544;150545;150546;150547;150548;150549;150550;150551;150552;150553;150554 92737;92738;92739;92740 92740 0 GSVAVLIKDEEGK Unmodified 1343.7296 0.72964538 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 21.898 21.984 2;3 1.2424E-06 8915 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 169.52 142.4 245850000 51311000 41393000 41434000 0 0 0 4692300 11177000 15091000 0 0 0 9507100 8814100 8989600 0 0 0 18777000 16356000 18304000 0 0 0 8120 734 7914 150555;150556;150557;150558;150559;150560;150561;150562;150563;150564;150565;150566;150567;150568;150569;150570;150571;150572;150573;150574;150575;150576 92741;92742;92743;92744;92745;92746;92747;92748;92749 92748 8 GSVDAIR Unmodified 716.3817 0.38170256 84 P03960 kdpB Potassium-transporting ATPase B chain yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 4.5625 5.5171 2 0.12066 838 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 50.12 5.7126 909320000 0 0 0 90135000 107360000 86977000 0 0 0 0 0 0 106040000 67145000 88844000 0 0 0 130440000 122680000 109690000 0 0 0 8121 84 7915 150577;150578;150579;150580;150581;150582;150583;150584;150585 92750 92750 1 GSVENGAYK Unmodified 923.43486 0.43486035 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.092 11.661 2 0.00078595 2416 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 101.28 87.509 286430000 0 2981300 0 11952000 13293000 13258000 3697900 5626000 0 38638000 35429000 35942000 4386100 5029700 3043800 8077500 12578000 17269000 5694000 3618000 7783000 19283000 22694000 16157000 8122 480 7916 150586;150587;150588;150589;150590;150591;150592;150593;150594;150595;150596;150597;150598;150599;150600;150601;150602;150603;150604;150605;150606 92751;92752;92753;92754;92755;92756;92757;92758;92759;92760;92761 92755 11 GSVNPECTLAQLGAAK Unmodified 1614.8036 0.80355538 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 35.794 34.226 2;3 2.8955E-18 16546 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 183.99 174.55 24738000000 6890700000 7111900000 6188100000 5943300 5525000 5167500 72176000 922010000 879050000 0 0 0 327670000 317850000 319350000 0 0 0 528330000 587270000 577160000 0 0 0 8123 517 7917 150607;150608;150609;150610;150611;150612;150613;150614;150615;150616;150617;150618;150619;150620;150621;150622;150623;150624;150625;150626;150627;150628;150629;150630;150631;150632;150633;150634;150635 92762;92763;92764;92765;92766;92767;92768;92769;92770;92771;92772;92773;92774;92775;92776;92777;92778;92779;92780;92781;92782;92783;92784;92785;92786;92787;92788 92781 27 GSVSLKEDPAGNYIHYGVR Unmodified 2061.028 0.02795267 1423 P33570 tktB Transketolase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 1 2 1 1 1 1 1 2 1 26.217 24.962 3;4 1.1379E-10 11263 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.14 125.29 338170000 77385000 68816000 62291000 1104600 936140 847620 42719000 22646000 35877000 1372700 0 1300800 0 1697100 1698300 0 0 0 3658400 11234000 4583800 0 0 0 8124 1423 7918 150636;150637;150638;150639;150640;150641;150642;150643;150644;150645;150646;150647;150648;150649;150650;150651;150652;150653;150654;150655;150656;150657 92789;92790;92791;92792;92793;92794 92790 6 GSVTHQR Unmodified 783.39875 0.39874961 1676 P64483 yeaK Uncharacterized protein YeaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 4.5068 5.3692 2 0.0016524 855 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 126.2 116.96 138540000 24972000 24911000 21010000 0 0 0 2020200 2234600 0 0 0 0 9280600 9153800 8243700 0 0 0 12895000 10251000 13565000 0 0 0 8125 1676 7919 150658;150659;150660;150661;150662;150663;150664;150665;150666;150667;150668;150669 92795;92796;92797;92798;92799;92800;92801;92802;92803;92804;92805;92806 92798 12 GSWIDESMVVLPEAPPLHTLPLATK Unmodified 2700.4197 0.41967456 1543 P39829 garD D-galactarate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 54.147 52.694 3 0.019136 26102 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 49.25 46.842 231500000 28865000 30276000 29854000 0 0 0 19124000 15986000 15893000 0 0 0 23251000 28093000 22801000 0 0 0 17354000 0 0 0 0 0 8126 1543 7920 150670;150671;150672;150673;150674;150675;150676;150677;150678;150679 92807;92808;92809 92807 1 GSWLDFEFDPK Unmodified 1339.6085 0.60846762 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.348 51.217 2 0.00015967 19965 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 109.66 109.66 40063000000 332070000 319030000 336300000 16047000 20016000 20634000 234160000 214920000 212210000 2361200000 2402500000 2271500000 262470000 260820000 257760000 6487700000 6962100000 5930800000 317290000 322110000 363900000 3745100000 3123200000 3289500000 8127 463 7921 150680;150681;150682;150683;150684;150685;150686;150687;150688;150689;150690;150691;150692;150693;150694;150695;150696;150697;150698;150699;150700;150701;150702;150703 92810;92811;92812;92813;92814;92815;92816;92817;92818;92819;92820;92821;92822;92823;92824;92825;92826;92827;92828;92829;92830;92831;92832;92833;92834;92835;92836;92837;92838;92839;92840;92841;92842;92843;92844;92845;92846;92847;92848;92849 92810 40 GSWLDFEFDPKDNLFVR Unmodified 2084.0003 0.0003409361 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 3 3 2 2 3 54.376 53.441 2;3 1.4526E-61 21221 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 304.89 301.57 18811000000 0 0 0 5017400 5326300 5164100 0 0 0 212310000 249840000 380320000 0 0 0 5429500000 5267600000 4443500000 0 0 0 1084800000 916600000 811080000 8128 463 7922 150704;150705;150706;150707;150708;150709;150710;150711;150712;150713;150714;150715;150716;150717;150718;150719;150720;150721;150722;150723;150724;150725;150726;150727 92850;92851;92852;92853;92854;92855;92856;92857;92858;92859;92860;92861;92862;92863;92864;92865;92866;92867;92868 92865 19 GSYSGSTYTVK Unmodified 1148.535 0.53496832 777 P0ADA3 nlpD Murein hydrolase activator NlpD yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.209 14.625 2 0.00026114 4590 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 96.665 80.784 110940000 0 28383000 28453000 0 0 0 0 0 17952000 2883400 3189400 2574900 0 0 0 0 0 0 25863000 0 0 885240 752410 0 8129 777 7923 150728;150729;150730;150731;150732;150733;150734;150735;150736 92869;92870;92871;92872 92871 4 GTADAVTQNLDIIR Unmodified 1485.7787 0.77872084 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.834 36.16 2 5.8807E-45 17419 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 278.83 266.78 1160700000 102650000 95047000 85622000 0 0 0 150380000 149880000 155560000 0 0 0 83547000 77876000 67123000 0 0 0 67442000 60319000 65308000 0 0 0 8130 283 7924 150737;150738;150739;150740;150741;150742;150743;150744;150745;150746;150747;150748 92873;92874;92875;92876;92877;92878;92879;92880;92881;92882;92883;92884 92881 12 GTAFEGK Unmodified 708.34425 0.34425443 1008 P0AGD3 sodB Superoxide dismutase [Fe] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 1 1 2 1 1 1 1 1 1 1 1 11.134 11.937 2 0.048643 2956 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 63.287 58.462 2224700000 267650000 222410000 210990000 1665000 0 0 247710000 211490000 264110000 0 0 0 143390000 97164000 123560000 0 0 0 156730000 132240000 145630000 0 0 0 8131 1008 7925 150749;150750;150751;150752;150753;150754;150755;150756;150757;150758;150759;150760;150761;150762;150763;150764 92885;92886;92887;92888;92889;92890 92885 6 GTAIFSFHAIK Unmodified 1190.6448 0.64479354 1927 P77690 arnB UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.739 29.937 3 0.16458 10111 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 14.009 11.664 25559000 0 2837700 0 0 1486200 1821900 3030000 3136800 2988400 3219900 3375800 2393500 0 0 0 0 0 0 0 0 1268800 0 0 0 8132 1927 7926 150765;150766;150767;150768;150769;150770;150771;150772;150773;150774 92891 92891 1 GTAMNPVDHPHGGGEGR Unmodified 1687.7485 0.74850012 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 2 3 3 3 3 3 2 3 2 3 3 3 3 11.231 11.839 2;3;4 1.8915E-24 2950 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 217.12 211.09 11069000000 1510200000 1375300000 1529200000 39516000 40840000 48544000 406760000 397860000 422950000 115520000 116300000 64919000 714620000 613570000 548520000 97242000 104510000 91581000 910470000 573910000 931670000 136990000 135360000 142490000 8133 1620 7927 150775;150776;150777;150778;150779;150780;150781;150782;150783;150784;150785;150786;150787;150788;150789;150790;150791;150792;150793;150794;150795;150796;150797;150798;150799;150800;150801;150802;150803;150804;150805;150806;150807;150808;150809;150810;150811;150812;150813;150814;150815;150816;150817;150818;150819;150820;150821;150822;150823;150824;150825;150826;150827;150828;150829;150830;150831;150832;150833;150834;150835;150836;150837;150838;150839;150840;150841;150842;150843 92892;92893;92894;92895;92896;92897;92898;92899;92900;92901;92902;92903;92904;92905;92906;92907;92908;92909;92910;92911;92912;92913;92914;92915;92916;92917;92918;92919;92920;92921;92922;92923;92924;92925;92926;92927;92928;92929;92930;92931;92932;92933;92934;92935;92936;92937;92938;92939;92940;92941;92942;92943;92944;92945;92946;92947;92948;92949;92950;92951;92952;92953;92954;92955 92909 64 GTAMNPVDHPHGGGEGR Oxidation (M) 1703.7434 0.74341474 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 2 1 1 2 2 1 1 2 2 10.381 11.149 2;3 1.3748E-08 2524 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.02 123.02 437700000 54556000 57992000 42920000 0 0 0 37055000 25200000 23607000 0 0 0 30047000 33492000 28788000 0 0 4304900 10442000 49270000 40026000 0 0 0 8134 1620 7927 150844;150845;150846;150847;150848;150849;150850;150851;150852;150853;150854;150855;150856;150857;150858;150859;150860;150861;150862;150863;150864;150865 92956;92957;92958;92959;92960;92961 92959 577 5 GTAYPDPVQAAFIAEQAGADGITVHLR Unmodified 2767.3929 0.39294254 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.583 51.283 3 7.1188E-16 25426 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 141.5 138.44 883070000 76461000 83011000 63193000 1624200 1932600 1859500 69212000 69645000 69318000 4042600 4907600 3665500 72434000 66219000 57269000 0 0 0 75061000 78959000 79115000 2637100 2508600 0 8135 319 7928 150866;150867;150868;150869;150870;150871;150872;150873;150874;150875;150876;150877;150878;150879;150880;150881;150882;150883;150884;150885 92962;92963;92964;92965;92966;92967;92968;92969;92970;92971;92972;92973 92962 12 GTCQTYILGQR Unmodified 1295.6292 0.62921983 779 P0ADB1 osmE Osmotically-inducible lipoprotein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 1 1 1 23.021 22.275 2;3 1.9313E-26 9452 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 255.95 246.29 909680000 85068000 77032000 77974000 39710000 44952000 41851000 66806000 71025000 78271000 57502000 50510000 73236000 9082800 7093900 9317100 0 0 0 24281000 28143000 31277000 15310000 10755000 10485000 8136 779 7929 150886;150887;150888;150889;150890;150891;150892;150893;150894;150895;150896;150897;150898;150899;150900;150901;150902;150903;150904;150905;150906;150907;150908;150909;150910;150911;150912;150913;150914 92974;92975;92976;92977;92978;92979;92980;92981;92982;92983;92984;92985;92986;92987;92988;92989;92990;92991;92992;92993;92994 92985 21 GTDIVLGGSWQAEVAALENPTAEQIEK Unmodified 2825.4083 0.40831783 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.544 53.47 3 6.397E-08 21327 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 107.47 95.469 106710000 0 0 0 2200700 2072700 0 0 0 1429200 14246000 11660000 15839000 0 0 0 11542000 8657900 6914000 12871000 0 0 0 9385000 9891000 8137 1057 7930 150915;150916;150917;150918;150919;150920;150921;150922;150923;150924;150925;150926 92995;92996;92997 92997 3 GTDPDHIFEILLEAEVDVR Unmodified 2167.0797 0.079713469 413 P0A8A2 yeeN Probable transcriptional regulatory protein YeeN yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.439 53.955 2 1.2399E-55 26829 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 283.82 265.69 252340000 12348000 13821000 17869000 0 0 0 23013000 36994000 24840000 0 0 0 0 15250000 11290000 0 0 0 31019000 38303000 27595000 0 0 0 8138 413 7931 150927;150928;150929;150930;150931;150932;150933;150934;150935;150936;150937 92998;92999;93000;93001 92998 4 GTDVDQPR Unmodified 886.41446 0.41445926 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 10.564 11.39 2 0.00075967 2663 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.34 60.67 2403200000 288270000 0 227740000 0 0 0 220430000 211480000 227960000 0 0 0 238790000 205780000 179970000 0 0 0 216510000 202530000 183780000 0 0 0 8139 1137 7932 150938;150939;150940;150941;150942;150943;150944;150945;150946;150947;150948 93002;93003;93004;93005;93006;93007;93008;93009;93010;93011 93008 10 GTEITLHLR Unmodified 1038.5822 0.58219329 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 2 1 1 3 3 2 1 1 1 1 2 1 1 21.886 21.866 2 2.7985E-06 8887 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.66 167.07 821270000 98798000 90463000 75782000 1014600 1309800 0 50348000 55900000 50410000 1829000 1775100 0 59851000 60231000 63361000 1146900 0 350800 65700000 66942000 74159000 967330 0 936920 8140 295 7933 150949;150950;150951;150952;150953;150954;150955;150956;150957;150958;150959;150960;150961;150962;150963;150964;150965;150966;150967;150968;150969;150970;150971;150972;150973;150974;150975;150976;150977;150978 93012;93013;93014;93015;93016;93017;93018;93019;93020;93021;93022;93023 93019 12 GTEMSADIAK Unmodified 1021.475 0.4750106 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.313 15.959 2 0.0002024 5071 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 121.05 121.05 405850000 36042000 31820000 28116000 2219300 2169700 1739900 42062000 45078000 41290000 4151700 4733600 4014800 29206000 22411000 24448000 0 1035300 0 26605000 28335000 28791000 1581000 0 0 8141 1507 7934 150979;150980;150981;150982;150983;150984;150985;150986;150987;150988;150989;150990;150991;150992;150993;150994;150995;150996;150997;150998 93024;93025;93026;93027;93028;93029;93030 93030 7 GTENEDFMFLNLGPNHPSAHGAFR Unmodified 2657.2081 0.20811866 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 39.739 38.008 3;4 8.0541E-22 17775 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 157.73 155.98 1621600000 63021000 63393000 49921000 12151000 17249000 11379000 111960000 105580000 120980000 46731000 46096000 53899000 113040000 95970000 105010000 12107000 11043000 14286000 157310000 153490000 159890000 36599000 30315000 30124000 8142 1426 7935 150999;151000;151001;151002;151003;151004;151005;151006;151007;151008;151009;151010;151011;151012;151013;151014;151015;151016;151017;151018;151019;151020;151021;151022;151023;151024;151025;151026;151027;151028;151029;151030;151031;151032;151033;151034;151035;151036;151037;151038;151039;151040;151041;151042;151043 93031;93032;93033;93034;93035;93036;93037;93038;93039;93040;93041;93042;93043;93044;93045;93046;93047;93048;93049;93050;93051;93052;93053;93054;93055;93056;93057;93058;93059;93060;93061;93062;93063;93064;93065;93066;93067;93068;93069;93070 93066 40 GTFANIR Unmodified 777.41334 0.41333704 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.463 17.261 2 0.00547 6102 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.511 67 854940000 231570000 211790000 219900000 0 0 0 0 71916000 0 0 0 0 15943000 14829000 7964000 0 0 0 24442000 29848000 26729000 0 0 0 8143 1254 7936 151044;151045;151046;151047;151048;151049;151050;151051;151052;151053 93071;93072;93073 93072 3 GTFDHQCLILR Unmodified 1358.6765 0.67650438 1309 P27832 wecD dTDP-fucosamine acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.981 25.834 3 0.0012162 11212 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 68.893 57.36 77306000 5338900 5116800 4427000 0 0 0 4622000 4846400 3857400 0 0 0 7489500 8039400 6985400 0 0 0 8300000 8706300 9577200 0 0 0 8144 1309 7937 151054;151055;151056;151057;151058;151059;151060;151061;151062;151063;151064;151065 93074 93074 1 GTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA Unmodified 3892.8003 0.80026751 996 P0AG86 secB Protein-export protein SecB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 56 56.056 3 6.6958E-19 21313 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 135.2 134.67 474260000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 213930000 22083000 238250000 0 0 0 0 0 0 8145 996 7938 151066;151067;151068 93075;93076;93077 93077 3 GTGNMELHLSR Unmodified 1213.5874 0.58735502 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.695 18.13 3 0.00088119 5623 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 65.395 56.65 743610000 102180000 93085000 83223000 5531800 5651100 4957700 58298000 51368000 48932000 24535000 28804000 25084000 28885000 33437000 27164000 2297500 1753800 1578300 34442000 36866000 38575000 2053300 2595200 2320500 8146 982 7939 151069;151070;151071;151072;151073;151074;151075;151076;151077;151078;151079;151080;151081;151082;151083;151084;151085;151086;151087;151088;151089;151090;151091;151092 93078;93079;93080;93081;93082;93083;93084;93085;93086;93087 93078 10 GTGQTLYILDEPTTGLHFADIQQLLDVLHK Unmodified 3335.7402 0.74015708 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 55.391 55.045 4 4.387E-23 20716 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 159.59 153.7 109260000 0 0 0 0 0 0 0 154820 0 0 0 0 0 0 0 25436000 38846000 44827000 0 0 0 0 0 0 8147 222 7940 151093;151094;151095;151096 93088;93089;93090 93090 3 GTGSGGGSSSQGPRPQLGGR Unmodified 1798.867 0.86703535 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.856 12.462 3 4.3043E-18 2738 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 158.98 155.14 937190000 22402000 28373000 21081000 25012000 24993000 27409000 66501000 56849000 70882000 58277000 50865000 60380000 38425000 31813000 32652000 8081600 6262400 5772400 57701000 67472000 59186000 37907000 38350000 40550000 8148 649 7941 151097;151098;151099;151100;151101;151102;151103;151104;151105;151106;151107;151108;151109;151110;151111;151112;151113;151114;151115;151116;151117;151118;151119;151120 93091;93092;93093;93094;93095;93096;93097;93098;93099;93100;93101;93102;93103;93104;93105;93106;93107;93108;93109;93110;93111;93112 93103 22 GTHNPNFVR Unmodified 1040.5152 0.51517635 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.462 12.295 2 0.006725 3258 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.905 55.747 116790000 15134000 11762000 9670200 0 0 0 12071000 12195000 15037000 0 0 0 7146600 1494700 7096000 0 0 0 9856200 8611100 6712300 0 0 0 8149 904 7942 151121;151122;151123;151124;151125;151126;151127;151128;151129;151130;151131;151132 93113;93114;93115 93113 3 GTHTLESQPQR Unmodified 1252.616 0.61601261 870 P0AEL6 fepB Ferrienterobactin-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.511 11.318 2 0.045888 2692 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 47.187 42.222 56301000 6465000 7971900 3360000 0 0 0 4192400 3088700 3743400 0 0 0 4768800 4317000 0 0 0 0 8405700 5807100 4181200 0 0 0 8150 870 7943 151133;151134;151135;151136;151137;151138;151139;151140;151141;151142;151143 93116 93116 1 GTIAEDLNDGLTGGFK Unmodified 1606.7839 0.7838658 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.023 41.488 2;3 6.3492E-25 20226 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 224.66 195.7 1930900000 196710000 183490000 159430000 0 0 0 151590000 144850000 125330000 0 0 0 125050000 130110000 123920000 0 0 0 188740000 196360000 205290000 0 0 0 8151 1143 7944 151144;151145;151146;151147;151148;151149;151150;151151;151152;151153;151154;151155;151156;151157;151158;151159;151160;151161;151162;151163;151164;151165;151166;151167 93117;93118;93119;93120;93121;93122;93123;93124;93125;93126;93127;93128;93129;93130;93131;93132;93133 93120 17 GTIAEDLNDGLTGGFKGDNFLLIR Unmodified 2535.2969 0.29691689 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.088 51.886 3 4.8832E-10 20686 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 118.35 111.07 94548000 0 5383100 0 4739700 4275000 5056000 3551900 2829200 4864500 5861000 5035700 3117700 0 0 0 2104200 6255800 3562700 6156300 5015700 5792400 7558700 7206400 6182300 8152 1143 7945 151168;151169;151170;151171;151172;151173;151174;151175;151176;151177;151178;151179;151180;151181;151182;151183;151184;151185;151186 93134;93135;93136;93137;93138;93139;93140 93136 6 GTIAEQIAQEMQK Unmodified 1445.7184 0.71842877 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 39.721 37.973 2 2.5649E-17 18937 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 232.88 227.1 180320000 22237000 23422000 17694000 0 0 0 26742000 0 25434000 3127900 0 0 14155000 14244000 16063000 0 0 0 0 0 17203000 0 0 0 8153 1155 7946 151187;151188;151189;151190;151191;151192;151193;151194;151195;151196 93141;93142;93143;93144;93145 93141 5 GTIDLNLPLADNLR Unmodified 1523.8308 0.83075641 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.934 48.528 2 1.9731E-26 22635 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 233.54 208.16 472390000 23791000 25849000 18498000 0 0 0 41300000 35913000 41677000 0 0 0 42561000 48195000 46525000 0 0 0 48404000 48471000 51202000 0 0 0 8154 509 7947 151197;151198;151199;151200;151201;151202;151203;151204;151205;151206;151207;151208 93146;93147;93148;93149;93150;93151;93152;93153;93154;93155 93155 10 GTIIEMFNMFSGGALSR Unmodified 1829.8804 0.8804255 1001 P0AGA2 secY Protein translocase subunit SecY yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.571 54.099 2 2.4092E-06 26983 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.37 94.412 209840000 6858900 5298900 5860800 0 0 0 13892000 13241000 15109000 6997000 0 4917300 17909000 20453000 17049000 0 0 0 25067000 25529000 21782000 5822000 0 4057600 8155 1001 7948 151209;151210;151211;151212;151213;151214;151215;151216;151217;151218;151219;151220;151221;151222;151223;151224 93156;93157 93156 1 GTKDQIFNNPR Unmodified 1288.6524 0.65239812 1463 P37313 dppF Dipeptide transport ATP-binding protein DppF yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 13.068 14.155 3 0.03977 3256 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 43.419 41.361 5852900 0 0 0 1896100 2113300 1843500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8156 1463 7949 151225;151226;151227 93158;93159 93159 0 GTLADILK Unmodified 829.49092 0.49091866 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.463 33.981 2 0.0069737 16520 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 84.097 46.489 1038700000 133980000 0 103020000 2832000 0 0 189030000 149660000 147940000 5909400 3877600 4227700 48367000 42645000 42272000 1487000 1155600 1228100 46980000 57100000 56996000 0 0 0 8157 1662 7950 151228;151229;151230;151231;151232;151233;151234;151235;151236;151237;151238;151239;151240;151241;151242;151243;151244;151245;151246 93160;93161;93162;93163;93164;93165;93166;93167;93168;93169;93170 93163 8 GTLAMAR Unmodified 718.37959 0.37959407 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 13.272 14.006 1;2 0.0010258 4166 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.53 0 4264900000 524430000 111730000 115580000 2389300 2187700 2310300 395870000 429850000 401760000 0 0 679480 337240000 348120000 442970000 560320 0 0 398320000 397110000 351850000 829380 626050 514790 8158 1222 7951 151247;151248;151249;151250;151251;151252;151253;151254;151255;151256;151257;151258;151259;151260;151261;151262;151263;151264;151265;151266;151267;151268 93171;93172;93173;93174;93175;93176;93177;93178;93179;93180;93181;93182;93183 93173 13 GTLDLSK Unmodified 732.40177 0.4017693 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.553 16.07 2 0.13308 5419 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 47.849 22.85 82686000 11243000 10425000 9974700 1194100 0 0 4936400 0 6238900 1531700 1293100 1203900 0 0 0 0 0 0 10225000 9388200 11573000 969680 1037300 1452500 8159 544 7952 151269;151270;151271;151272;151273;151274;151275;151276;151277;151278;151279;151280;151281;151282;151283 93184 93184 1 GTLEDPNLFIR Unmodified 1273.6667 0.6666512 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 1 2 2 1 1 1 2 2 2 2 2 2 1 39.776 38 2;3 3.9925E-14 18277 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206.16 195.33 2409100000 253770000 233580000 214720000 4079400 4263300 4693800 4135400 8104000 239920000 2711500 2854800 3618100 201210000 186920000 198500000 0 0 0 289850000 275010000 278280000 0 2851000 0 8160 295 7953 151284;151285;151286;151287;151288;151289;151290;151291;151292;151293;151294;151295;151296;151297;151298;151299;151300;151301;151302;151303;151304;151305;151306;151307;151308;151309;151310;151311;151312 93185;93186;93187;93188;93189;93190;93191;93192;93193;93194;93195;93196;93197;93198;93199;93200;93201 93197 17 GTLGQDVIDIR Unmodified 1185.6354 0.63535107 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.736 33.059 2 2.644E-05 15792 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.76 147.53 8372800000 1606300000 1709500000 1401200000 3516300 3665300 4332700 447440000 471510000 419930000 10662000 11485000 10799000 231400000 203140000 197630000 0 0 0 537610000 551940000 542900000 3414000 0 4440300 8161 657 7954 151313;151314;151315;151316;151317;151318;151319;151320;151321;151322;151323;151324;151325;151326;151327;151328;151329;151330;151331;151332 93202;93203;93204;93205;93206;93207;93208;93209;93210;93211;93212;93213;93214;93215;93216;93217;93218;93219 93208 18 GTLHDFLR Unmodified 957.50321 0.50321468 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.577 22.023 2 0.0014295 9705 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.92 80.818 1579400000 146870000 146410000 125620000 0 0 0 126130000 127540000 109710000 0 0 0 135370000 111330000 101170000 0 0 0 135350000 150790000 163150000 0 0 0 8162 183 7955 151333;151334;151335;151336;151337;151338;151339;151340;151341;151342;151343;151344 93220;93221;93222;93223;93224;93225;93226 93221 6 GTLIKDPCNK Unmodified 1144.591 0.59104341 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 2 2 2 1 1 2 1 1 1 1 1 12.788 13.313 2;3 0.00018698 3181 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 129.72 120.13 268350000 0 0 0 5907400 4941000 5798600 3376900 0 4886700 27296000 29518000 26542000 0 0 0 0 4529500 0 124550000 5990700 4114700 6313100 9160400 5423900 8163 190 7956 151345;151346;151347;151348;151349;151350;151351;151352;151353;151354;151355;151356;151357;151358;151359;151360;151361;151362;151363;151364 93227;93228;93229;93230;93231;93232 93229 6 GTLIVNKPQSLR Unmodified 1324.7827 0.78268401 90 P04425 gshB Glutathione synthetase yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 17.672 18.346 2 5.8059E-06 6925 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 135.86 130.92 649780000 0 0 87682000 0 0 0 70782000 71489000 66742000 0 0 0 50352000 49117000 55808000 0 0 0 70356000 56197000 71255000 0 0 0 8164 90 7957 151365;151366;151367;151368;151369;151370;151371;151372;151373;151374 93233;93234;93235;93236 93233 4 GTLLAQDGEER Unmodified 1187.5782 0.57823012 1833 P76215 astE Succinylglutamate desuccinylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 17.098 17.797 2 1.9816E-05 6354 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.57 127.35 55974000 17913000 19680000 18381000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8165 1833 7958 151375;151376;151377 93237;93238;93239 93239 3 GTLLVGLEGTYPPFSFQGDDGK Unmodified 2297.1216 0.12157828 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 2 1 1 1 1 1 54.453 53.012 2 1.7595E-34 25997 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 254.84 254.51 489720000 72758000 67324000 53838000 0 0 0 35940000 36769000 34177000 0 0 0 41775000 29365000 29612000 0 0 0 31079000 30347000 26733000 0 0 0 8166 874 7959 151378;151379;151380;151381;151382;151383;151384;151385;151386;151387;151388;151389;151390 93240;93241;93242;93243;93244;93245;93246;93247;93248;93249 93246 10 GTLTHGR Unmodified 740.39294 0.39293595 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 5.6244 6.455 2 0.0074779 1466 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 91.14 84.117 726240000 82799000 76731000 68146000 0 0 0 94252000 119160 85155000 0 0 0 0 61066000 69312000 0 0 0 64606000 76129000 47924000 0 0 0 8167 720 7960 151391;151392;151393;151394;151395;151396;151397;151398;151399;151400;151401 93250;93251;93252 93251 3 GTLTQPGK Unmodified 800.43922 0.43921744 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.19 12.016 2 0.0037689 3059 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 89.369 75.817 1152300000 77807000 74666000 79177000 0 0 0 138030000 113740000 125030000 0 0 0 117040000 87071000 104700000 0 0 0 121770000 0 113220000 0 0 0 8168 63 7961 151402;151403;151404;151405;151406;151407;151408;151409;151410;151411;151412 93253;93254;93255;93256;93257;93258;93259;93260;93261;93262;93263 93257 10 GTNTVIVLPIGIGQLGK Unmodified 1678.9982 0.99815609 617 P0AAX8 ybiS Probable L,D-transpeptidase YbiS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.701 51.392 2 1.6479E-08 24956 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.6 116.6 1373400000 125150000 124470000 117510000 2194900 2469800 0 101580000 99880000 82311000 0 0 930860 105460000 105210000 104970000 0 0 0 136570000 136580000 128140000 0 0 0 8169 617 7962 151413;151414;151415;151416;151417;151418;151419;151420;151421;151422;151423;151424;151425;151426;151427 93264;93265;93266;93267;93268;93269;93270;93271;93272 93269 8 GTPAHSAVSYQDGDYLMFGPETR Unmodified 2498.1172 0.11723796 1023 P0AGJ7 trmL tRNA (cytidine(34)-2'-O)-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.402 35.729 3 6.0204E-10 16710 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.63 113.45 104100000 12887000 11455000 10218000 0 0 0 5726900 8337500 6504200 0 0 0 8146700 5821000 10011000 0 0 0 8677000 8887300 7424100 0 0 0 8170 1023 7963 151428;151429;151430;151431;151432;151433;151434;151435;151436;151437;151438;151439 93273;93274 93274 2 GTPGFSGADLANLVNEAALFAAR Unmodified 2261.144 0.14404506 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 55.628 54.224 3 8.5374E-05 20013 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 81.574 78.112 92964000 0 0 0 9801600 8426900 8357700 0 0 0 14202000 14555000 12489000 0 0 0 0 0 0 0 0 0 9845000 7384600 7902000 8171 595 7964 151440;151441;151442;151443;151444;151445;151446;151447;151448 93275;93276;93277;93278 93277 4 GTPPNLR Unmodified 753.41334 0.41333704 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.035 12.742 2 0.068758 2830 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 59.609 50.369 156130000 10855000 9982500 9043900 0 467760 0 9720500 10761000 8528400 0 0 0 9268100 8660800 7787500 0 0 755420 11370000 13008000 10377000 12099000 11835000 11611000 8172 1433 7965 151449;151450;151451;151452;151453;151454;151455;151456;151457;151458;151459;151460;151461;151462;151463;151464;151465 93279;93280 93279 2 GTPTVISR Unmodified 829.46577 0.46576654 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.755 39.757 2 0.11348 15583 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 46.37 9.7835 346160000 3003200 0 0 55895000 49536000 49909000 3805300 3070200 4987800 5575300 3599000 3814600 0 0 0 0 0 0 3364500 3834100 2701100 42097000 52973000 57992000 8173 902 7966 151466;151467;151468;151469;151470;151471;151472;151473;151474;151475;151476;151477;151478;151479;151480;151481 93281;93282;93283 93281 3 GTPTVISRPESEFTAIYR Unmodified 2023.0375 0.037454724 902 P0AF08 mrp Protein mrp yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 35.264 33.758 2;3 6.3784E-29 16594 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 249.3 226.58 3014000000 276710000 234120000 218700000 2739400 1910200 0 284320000 255680000 256990000 4121700 3975100 4094200 214850000 225400000 223730000 0 1026900 880240 267340000 267940000 268330000 0 1185800 0 8174 902 7967 151482;151483;151484;151485;151486;151487;151488;151489;151490;151491;151492;151493;151494;151495;151496;151497;151498;151499;151500;151501;151502;151503;151504;151505;151506;151507;151508;151509;151510;151511;151512;151513 93284;93285;93286;93287;93288;93289;93290;93291;93292;93293;93294;93295;93296;93297;93298;93299;93300;93301;93302;93303;93304;93305;93306;93307;93308 93286 25 GTPYEIFNVSLTQTLHR Unmodified 1975.0163 0.016325351 998 P0AG93 secF Protein translocase subunit SecF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 47.068 45.651 3 1.7256E-06 22079 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 90.348 88.001 94435000 0 4596900 0 0 0 0 6702700 10166000 8922500 0 0 0 8536600 9445000 9273200 0 0 0 12218000 12065000 12508000 0 0 0 8175 998 7968 151514;151515;151516;151517;151518;151519;151520;151521;151522;151523 93309;93310;93311;93312;93313 93311 4 GTQAQFIMEK Unmodified 1151.5645 0.56449431 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.793 22.218 2 0.00017188 9703 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 123.86 97.921 8575800000 705180000 671070000 614090000 2450600 3283500 3044900 680660000 698610000 703600000 0 0 1267400 672120000 632710000 596630000 0 0 0 837350000 840840000 912900000 0 0 0 8176 1733 7969 151524;151525;151526;151527;151528;151529;151530;151531;151532;151533;151534;151535;151536;151537;151538;151539 93314;93315;93316;93317;93318;93319;93320;93321;93322;93323;93324;93325;93326;93327 93316 5 GTQAQFIMEK Oxidation (M) 1167.5594 0.55940893 1733 P69441 adk Adenylate kinase yes yes 0 1 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 3 3 2 3 1 1 3 3 19.24 19.524 2 1.4094E-08 6328 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.75 141.37 137670000 7589700 8327400 8423400 0 0 0 9704300 11313000 13734000 0 0 0 10177000 18200000 4703800 0 0 0 9263700 18882000 17352000 0 0 0 8177 1733 7969 151540;151541;151542;151543;151544;151545;151546;151547;151548;151549;151550;151551;151552;151553;151554;151555;151556;151557;151558;151559;151560;151561;151562;151563;151564 93328;93329;93330;93331;93332;93333;93334;93335;93336;93337;93338 93328 593 9 GTRPLTLNFDQQCWQPADAIK Unmodified 2458.2063 0.20632774 1268 P25718 malS Alpha-amylase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 41.77 40.075 3 2.791E-10 19518 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 118.44 116.92 95031000 0 0 0 0 0 0 0 7648800 9713100 0 0 0 9482200 7161100 8282700 0 0 0 16147000 22661000 13935000 0 0 0 8178 1268 7970 151565;151566;151567;151568;151569;151570;151571;151572 93339;93340;93341 93339 3 GTSANPDTYFQSR Unmodified 1442.6426 0.64262129 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.694 22.943 2 6.9092E-13 10051 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 199.09 199.09 338160000 33157000 37190000 31273000 0 0 790690 26906000 35836000 26747000 0 0 0 24229000 23864000 21848000 0 0 0 27662000 24310000 24347000 0 0 0 8179 1609 7971 151573;151574;151575;151576;151577;151578;151579;151580;151581;151582;151583;151584;151585 93342;93343;93344;93345;93346;93347;93348;93349 93342 8 GTSEISAGNADLSSR Unmodified 1463.6852 0.68521439 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 17.881 18.54 2 1.0744E-06 5049 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 117.98 111 82021000 8723400 8490300 7799600 18896000 18442000 19669000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8180 114 7972 151586;151587;151588;151589;151590;151591 93350;93351;93352;93353 93352 4 GTTEGINLVANSWGNSNVR Unmodified 1987.9712 0.97116607 1906 P77444 sufS Cysteine desulfurase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 39.269 37.558 2 1.3835E-06 18612 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 131.35 125.86 50086000 5925400 7395800 5322700 1350800 1320400 891850 5934000 4965700 5550500 0 0 0 0 3101700 1672400 0 0 0 3727000 2927600 0 0 0 0 8181 1906 7973 151592;151593;151594;151595;151596;151597;151598;151599;151600;151601;151602;151603;151604 93354 93354 1 GTTIARSHCNIEPVSGLK Unmodified 1938.9945 0.99454405 1917 P77554 yahJ Uncharacterized protein YahJ yes yes 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 37.349 35.808 3 0.17453 16488 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 5.71 1.8063 1297100000 0 0 0 0 0 0 0 0 0 0 0 0 272720000 215730000 202150000 0 0 0 297360000 0 309130000 0 0 0 8182 1917 7974 151605;151606;151607;151608;151609 93355 93355 1 GTTLQGDLK Unmodified 931.49746 0.4974606 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.741 15.558 2 0.0056668 5147 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 73.665 61.943 3066600000 343250000 331640000 338250000 1209300 1122600 960630 197380000 183260000 190990000 0 0 0 162130000 143650000 122500000 0 0 0 346750000 360450000 343010000 0 0 0 8183 28 7975 151610;151611;151612;151613;151614;151615;151616;151617;151618;151619;151620;151621;151622;151623;151624 93356;93357;93358;93359;93360;93361;93362;93363;93364;93365;93366;93367 93359 12 GTTQVFEAYSK Unmodified 1229.5928 0.59281755 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.676 22.938 2 0.00010091 10043 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.68 102.44 689320000 67313000 66922000 63386000 0 0 0 52870000 56989000 54974000 0 0 0 50597000 65777000 49747000 0 0 0 53504000 49526000 57718000 0 0 0 8184 111 7976 151625;151626;151627;151628;151629;151630;151631;151632;151633;151634;151635;151636 93368;93369;93370;93371;93372;93373 93368 6 GTTSEQIIEMAR Unmodified 1334.65 0.65001485 978 P0AG16 purF Amidophosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 28.979 27.831 2 4.2446E-13 12843 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 202.44 179.01 354890000 74702000 67103000 71378000 224070 0 0 0 0 0 0 0 0 20094000 19574000 19746000 0 0 0 24679000 26027000 31365000 0 0 0 8185 978 7977 151637;151638;151639;151640;151641;151642;151643;151644;151645;151646;151647;151648 93374;93375;93376;93377;93378;93379;93380;93381;93382 93376 9 GTVANPNQDK Unmodified 1042.5043 0.5043369 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 9.016 9.7702 2 0.00081836 2110 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.37 82.711 7079100 0 0 0 0 0 0 2413000 2383600 2282500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8186 194 7978 151649;151650;151651 93383;93384;93385 93383 3 GTVGMGIPGSISPYTGVVK Unmodified 1818.955 0.95497065 1231 P23917 mak Fructokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.264 41.749 2 1.8841E-09 20193 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.25 111.81 291780000 36954000 32771000 28726000 0 0 0 26906000 33391000 26228000 0 0 0 16886000 15477000 14896000 0 0 0 19294000 20794000 19462000 0 0 0 8187 1231 7979 151652;151653;151654;151655;151656;151657;151658;151659;151660;151661;151662;151663 93386;93387;93388;93389;93390;93391;93392 93390 7 GTVIDHIPAQIGFK Unmodified 1494.8195 0.81946344 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 35.757 34.26 2;3 2.8979E-14 16224 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 214.67 178.71 8610800000 2672000000 2748900000 2412400000 16784000 14650000 15745000 18242000 17705000 19870000 0 841460 0 55251000 51916000 57930000 1570400 1724500 1493100 168400000 163200000 167260000 1737700 1226900 1923000 8188 339 7980 151664;151665;151666;151667;151668;151669;151670;151671;151672;151673;151674;151675;151676;151677;151678;151679;151680;151681;151682;151683;151684;151685;151686;151687;151688;151689;151690;151691;151692;151693;151694;151695;151696;151697;151698;151699;151700;151701 93393;93394;93395;93396;93397;93398;93399;93400;93401;93402;93403;93404;93405;93406;93407;93408;93409;93410;93411;93412;93413;93414 93409 21 GTVIGHR Unmodified 738.41367 0.41367139 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS 1 10.233 10.98 2 0.0043336 2432 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.25 91.04 26311000 0 0 26311000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8189 1181 7981 151702 93415 93415 1 GTVLNSDISSVISR Unmodified 1446.7678 0.7678218 99 P04982 rbsD D-ribose pyranase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.903 36.263 2 0.00051765 18033 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.548 68.595 336210000 34034000 33969000 25593000 582020 0 0 36117000 32394000 0 0 0 0 35142000 32027000 27873000 0 0 0 26637000 25632000 26209000 0 0 0 8190 99 7982 151703;151704;151705;151706;151707;151708;151709;151710;151711;151712;151713;151714 93416;93417;93418 93416 1 GTVQGGGLTK Unmodified 916.49779 0.49779495 302 P0A722 lpxA Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 1 1 1 11.582 12.358 2 5.0638E-05 3172 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 135.71 70.908 647070000 73196000 101010000 89629000 3455700 2833800 3542200 58390000 51297000 51233000 3371000 2644100 2192500 30487000 25169000 33225000 0 0 0 43538000 38635000 33228000 0 0 0 8191 302 7983 151715;151716;151717;151718;151719;151720;151721;151722;151723;151724;151725;151726;151727;151728;151729;151730;151731;151732;151733;151734;151735;151736 93419;93420;93421;93422;93423;93424;93425;93426;93427;93428;93429;93430 93420 12 GTVSTESGVLNQQPYGFNTR Unmodified 2154.0342 0.03416026 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 33.85 32.402 2;3 1.5575E-81 15753 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 411.85 406.68 3363500000 605860000 561290000 457510000 0 0 0 411740000 389210000 368630000 0 0 0 83697000 74604000 79621000 0 0 0 110700000 114430000 106170000 0 0 0 8192 1038 7984 151737;151738;151739;151740;151741;151742;151743;151744;151745;151746;151747;151748;151749;151750;151751;151752;151753;151754;151755;151756;151757;151758;151759;151760 93431;93432;93433;93434;93435;93436;93437;93438;93439;93440;93441;93442;93443;93444;93445;93446;93447;93448;93449;93450;93451;93452;93453;93454 93431 24 GTVVDIPALCDALASK Unmodified 1628.8444 0.84435757 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 49.462 48.121 2;3 4.8552E-05 23307 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109 105.23 857110000 211160000 170550000 168080000 0 0 0 40634000 33652000 36059000 0 0 0 33992000 27474000 31549000 0 0 0 32969000 36873000 34119000 0 0 0 8193 555 7985 151761;151762;151763;151764;151765;151766;151767;151768;151769;151770;151771;151772;151773;151774;151775;151776;151777;151778 93455;93456;93457;93458;93459;93460;93461;93462;93463;93464;93465;93466;93467 93460 13 GVAACSSTR Unmodified 907.41816 0.41816443 1430 P33644 yfiH Laccase domain protein YfiH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 8.5595 9.4027 2 0.0003052 2420 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 117.4 94.907 56465000 10648000 5725500 2907000 0 0 0 5919200 5315100 5760800 0 0 0 2556200 2352600 0 0 0 0 4921800 4810700 5548100 0 0 0 8194 1430 7986 151779;151780;151781;151782;151783;151784;151785;151786;151787;151788;151789 93468;93469;93470;93471;93472;93473;93474;93475;93476;93477;93478 93473 11 GVAASEQTLIQVQK Unmodified 1470.8042 0.80420731 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.009 25.618 2 0.0069734 9517 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 80.706 70.183 79059000 0 0 0 0 0 0 8426900 6253600 6121500 3085700 4100900 0 4425300 5097000 5235300 0 0 0 10278000 11627000 11843000 0 2564400 0 8195 997 7987 151790;151791;151792;151793;151794;151795;151796;151797;151798;151799;151800;151801 93479 93479 1 GVAEGYK Unmodified 722.3599 0.35990449 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 11.061 11.903 2 0.02764 2867 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 69.432 34.727 657290000 1726800 102260000 93064000 0 0 491720 66335000 64129000 0 0 0 0 78832000 70240000 0 0 0 0 110910000 69292000 0 0 0 0 8196 161 7988 151802;151803;151804;151805;151806;151807;151808;151809;151810;151811 93480;93481;93482;93483 93482 1 GVAGLINAIR Unmodified 982.59236 0.59236404 1205 P23256 malY Protein MalY;Cystathionine beta-lyase MalY;Maltose regulon modulator yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.835 34.278 2 4.3617E-07 16979 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 175.75 151.6 145230000 9665800 7364000 6938700 0 0 0 18118000 22587000 16887000 0 0 0 11615000 10320000 11187000 0 0 0 11302000 10248000 8994100 0 0 0 8197 1205 7989 151812;151813;151814;151815;151816;151817;151818;151819;151820;151821;151822;151823 93484;93485;93486;93487;93488;93489;93490;93491;93492;93493;93494 93484 11 GVALSAGVQR Unmodified 956.54033 0.54032847 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.72 17.385 2 5.3117E-07 6362 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.73 119.29 1403600000 126350000 134360000 127830000 6143400 7023900 9995500 129720000 124840000 108930000 45784000 30500000 0 83305000 73732000 63987000 0 0 0 122340000 108000000 100710000 0 0 0 8198 1210 7990 151824;151825;151826;151827;151828;151829;151830;151831;151832;151833;151834;151835;151836;151837;151838;151839;151840;151841;151842;151843;151844 93495;93496;93497;93498;93499;93500;93501;93502;93503;93504;93505;93506;93507;93508;93509;93510;93511;93512;93513;93514;93515;93516 93498 21 GVALVDGK Unmodified 757.4334 0.43340378 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 16.361 16.386 2 0.0034654 4580 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 91.906 45.243 33089000 0 0 0 0 0 0 0 0 0 5908200 5290500 4471700 0 0 0 2480700 3334900 2003000 0 0 0 4372400 5227700 0 8199 272 7991 151845;151846;151847;151848;151849;151850;151851;151852 93517;93518;93519;93520 93519 4 GVANTVLIEK Unmodified 1042.6023 0.60226003 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.167 22.437 2 4.002E-05 10000 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.5 73.819 1625700000 55505000 46268000 51718000 0 0 0 228970000 199370000 226500000 0 0 0 156680000 140010000 145050000 0 0 0 114540000 132640000 128420000 0 0 0 8200 1806 7992 151853;151854;151855;151856;151857;151858;151859;151860;151861;151862;151863;151864 93521;93522;93523;93524;93525;93526;93527;93528;93529;93530;93531;93532 93521 12 GVAVEELAQVTTDNFAR Unmodified 1818.9112 0.91119158 960 P0AFQ7 ycfH Uncharacterized deoxyribonuclease YcfH yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.119 44.629 2 8.4442E-14 21770 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 213.84 202.63 118210000 13018000 12203000 13672000 0 0 0 7200900 7107900 7608700 0 0 0 9139000 10239000 7483100 0 0 0 9883000 9186900 11471000 0 0 0 8201 960 7993 151865;151866;151867;151868;151869;151870;151871;151872;151873;151874;151875;151876 93533;93534;93535;93536;93537;93538;93539;93540 93535 8 GVAVVIINSNFK Unmodified 1259.7238 0.72377215 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 1 1 37.534 35.894 2 2.3621E-08 17416 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.97 165.92 197170000 23157000 18491000 18646000 0 0 0 24560000 24436000 20163000 0 0 0 12544000 8649900 8590700 0 0 0 14167000 12443000 11322000 0 0 0 8202 278 7994 151877;151878;151879;151880;151881;151882;151883;151884;151885;151886;151887;151888;151889;151890;151891;151892 93541;93542;93543;93544;93545;93546;93547;93548;93549;93550 93548 7 GVAYYIEAGTLTNEQWQQVTAELHDR Unmodified 2991.4363 0.43626392 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 51.172 50.001 3 8.4958E-42 24244 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 224 217.9 268500000 75563000 75746000 54939000 0 0 0 0 0 0 0 0 0 11505000 8433300 10648000 0 0 0 0 15512000 16150000 0 0 0 8203 1107 7995 151893;151894;151895;151896;151897;151898;151899;151900 93551;93552 93552 2 GVCDLADKYDALVMVDDSHAVGFVGENGR Unmodified 3108.4281 0.42808377 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 47.808 46.391 3;4 2.0122E-31 22454 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 192.5 192.3 679160000 78781000 70096000 17460000 0 0 0 65214000 59282000 61772000 0 0 0 48388000 43324000 47865000 0 0 0 68296000 63698000 54982000 0 0 0 8204 635 7996 151901;151902;151903;151904;151905;151906;151907;151908;151909;151910;151911;151912;151913;151914;151915;151916;151917;151918;151919;151920;151921;151922;151923 93553;93554;93555;93556;93557;93558;93559;93560;93561;93562;93563;93564 93556 12 GVCGTAVAR Unmodified 889.44399 0.44398525 1846 P76270 msrC Free methionine-R-sulfoxide reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.796 12.432 2 7.0051E-05 3308 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.85 119.88 1533800000 156450000 142700000 146560000 0 0 0 135310000 123190000 137240000 0 0 2571400 104400000 91813000 91465000 3230600 2820900 3807400 130100000 134640000 127550000 0 0 0 8205 1846 7997 151924;151925;151926;151927;151928;151929;151930;151931;151932;151933;151934;151935;151936;151937;151938;151939 93565;93566;93567;93568 93566 4 GVCKPLHLGSR Unmodified 1222.6605 0.66046038 1942 P77781 menI 1,4-dihydroxy-2-naphthoyl-CoA hydrolase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.986 12.819 2 0.00017369 3611 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.75 107.9 71783000 11702000 13169000 17582000 0 0 0 0 3520100 5789500 0 0 0 0 3944900 4082500 0 0 0 4246700 4342000 3404300 0 0 0 8206 1942 7998 151940;151941;151942;151943;151944;151945;151946;151947;151948;151949 93569;93570 93570 2 GVCTLEDLAEQGIDDLADIEGLTDEK Unmodified 2818.3066 0.30661445 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 2 3 3 2 1 1 1 2 2 2 55.889 54.803 2;3;4 5.3597E-84 22081 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 297.28 283.87 1856500000 17316000 17838000 14582000 0 0 0 4737200 2517400 4147400 106750000 85272000 96330000 16345000 15286000 18352000 246040000 250440000 219990000 13573000 11990000 13598000 218080000 275120000 208210000 8207 935 7999 151950;151951;151952;151953;151954;151955;151956;151957;151958;151959;151960;151961;151962;151963;151964;151965;151966;151967;151968;151969;151970;151971;151972;151973;151974;151975;151976;151977;151978;151979;151980;151981;151982 93571;93572;93573;93574;93575;93576;93577;93578;93579;93580;93581;93582;93583;93584 93573 14 GVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR Unmodified 3672.7863 0.78625692 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS 1 56.019 56.019 4 2.4039E-07 22089 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 71.906 70.155 15435000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15435000 0 0 0 0 0 0 0 0 8208 935 8000 151983 93585 93585 1 GVDAVIDAVGFEAK Unmodified 1389.714 0.71399532 1896 P77316 ybdR Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.299 27.936 3 0.17319 12937 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 7.7806 6.2013 2163900000 218850000 201810000 243150000 2739800 2744700 3610300 287730000 277940000 265640000 7007300 5754200 6542800 103840000 118010000 89678000 0 615660 713290 107410000 106030000 93246000 7020700 6566900 7229800 8209 1896 8001 151984;151985;151986;151987;151988;151989;151990;151991;151992;151993;151994;151995;151996;151997;151998;151999;152000;152001;152002;152003;152004;152005;152006 93586 93586 1 GVDEIFGR Unmodified 891.44503 0.4450311 116 P05707 srlD Sorbitol-6-phosphate 2-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.55 38.365 2 0.00022905 13433 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.17 151.17 975240000 36745000 35738000 28086000 0 0 0 61546000 58380000 54147000 30356000 28906000 31009000 30983000 25099000 27896000 100500000 100380000 87658000 25614000 28501000 26985000 53272000 53277000 50156000 8210 116 8002 152007;152008;152009;152010;152011;152012;152013;152014;152015;152016;152017;152018;152019;152020;152021;152022;152023;152024;152025;152026;152027 93587;93588;93589;93590;93591;93592;93593;93594;93595;93596;93597;93598;93599;93600;93601;93602;93603;93604;93605;93606;93607 93604 21 GVDIMKPGGLVK Unmodified 1212.69 0.69002918 1401 P32705 actP Cation/acetate symporter ActP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 25.8 24.772 2;3 0.0020263 11013 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.538 70.302 177910000 53789000 48129000 43987000 12542000 9683500 9782800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8211 1401 8003 152028;152029;152030;152031;152032;152033;152034;152035;152036;152037;152038;152039 93608;93609;93610;93611;93612;93613 93612 6 GVDISQVFSAK Unmodified 1149.603 0.60298831 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38.73 37.21 2 6.3848E-09 14912 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 148.52 126.39 292450000 0 0 0 10987000 7592300 9836000 0 0 0 0 14351000 15661000 17554000 0 19117000 4739700 2506100 2631500 58172000 49802000 47367000 10471000 10149000 11510000 8212 1094 8004 152040;152041;152042;152043;152044;152045;152046;152047;152048;152049;152050;152051;152052;152053;152054;152055;152056;152057 93614;93615;93616;93617;93618;93619;93620;93621;93622;93623;93624;93625 93616 11 GVDLGDFPVMTFAEAER Unmodified 1852.8665 0.86654957 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.652 53.204 2 8.3457E-14 25071 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 162.97 137.63 2503500000 189100000 166050000 147370000 0 0 0 191840000 176660000 176100000 0 0 0 258830000 217910000 264080000 0 0 0 245750000 247480000 222290000 0 0 0 8213 1189 8005 152058;152059;152060;152061;152062;152063;152064;152065;152066;152067;152068;152069 93626;93627;93628;93629;93630;93631;93632;93633;93634;93635;93636 93636 1 GVDMAMR Unmodified 778.34658 0.34657939 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.086 16.67 2 0.00012382 4620 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 126.04 104.33 260840000 12540000 15666000 15556000 4767800 0 0 10949000 11159000 10151000 8844700 8248700 6651400 11186000 10032000 8412400 0 0 1795300 29966000 35064000 32307000 0 17215000 10328000 8214 215 8006 152070;152071;152072;152073;152074;152075;152076;152077;152078;152079;152080;152081;152082;152083;152084;152085;152086;152087;152088;152089;152090 93637;93638;93639;93640;93641;93642;93643;93644;93645;93646;93647;93648;93649 93639 11 GVDPALQHK Unmodified 963.51378 0.51377937 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.216 12.049 2 0.00014878 2916 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 131.04 96.229 2151500000 196840000 196990000 181040000 0 0 0 140140000 144720000 137540000 0 0 0 193480000 187460000 188580000 0 0 0 184750000 191900000 208070000 0 0 0 8215 161 8007 152091;152092;152093;152094;152095;152096;152097;152098;152099;152100;152101;152102 93650;93651;93652;93653;93654 93653 5 GVDPLKLEQELPESGVSLR Unmodified 2065.1055 0.10553429 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.096 42.307 3 0.0049934 14990 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 47.726 47.579 81228000 10058000 12998000 8098200 5876800 4296700 3704200 6285800 3174600 4851800 4292300 3098900 4424800 0 0 0 0 0 0 0 4494300 5573600 0 0 0 8216 1937 8008 152103;152104;152105;152106;152107;152108;152109;152110;152111;152112;152113;152114;152115;152116 93655;93656;93657;93658;93659 93656 5 GVDPMRPLLPPQSLWLR Unmodified 1974.0873 0.087322225 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.48 49.099 3 0.0039569 24331 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 54.974 53.941 91026000 11684000 9293600 11104000 0 0 0 7388000 7112400 7191400 0 0 0 4508300 4606600 4974400 0 0 0 7240200 7496600 8427100 0 0 0 8217 1355 8009 152117;152118;152119;152120;152121;152122;152123;152124;152125;152126;152127;152128 93660 93660 1 GVDQGKR Unmodified 758.4035 0.40350064 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 2 1 4.9338 5.8087 2 0.009813 1127 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.673 68.127 232910000 25790000 28959000 17463000 0 0 0 0 0 0 0 0 0 20292000 23614000 26027000 0 0 0 31112000 34337000 25319000 0 0 0 8218 561 8010 152129;152130;152131;152132;152133;152134;152135;152136;152137;152138;152139;152140 93661;93662;93663;93664;93665;93666 93666 6 GVDTGFK Unmodified 722.3599 0.35990449 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 13.305 14.171 1;2 0.0054991 4318 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 124.34 75.582 819170000 76111000 69014000 59038000 0 0 0 76000000 69387000 65294000 0 0 0 62504000 72785000 55660000 0 0 0 77184000 64217000 71976000 0 0 0 8219 170 8011 152141;152142;152143;152144;152145;152146;152147;152148;152149;152150;152151;152152;152153;152154;152155;152156;152157;152158;152159;152160;152161;152162;152163;152164 93667;93668;93669;93670;93671;93672 93671 3 GVDTTDAAANAIPAAQTLAR Unmodified 1925.9807 0.98066813 1860 P76423 thiM Hydroxyethylthiazole kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 36.157 34.528 2 3.8285E-14 15983 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 175.15 161.95 62751000 0 0 0 0 0 0 8854000 9230200 6567200 0 0 0 5003100 4617700 3724900 0 0 0 7673400 9123800 7956900 0 0 0 8220 1860 8012 152165;152166;152167;152168;152169;152170;152171;152172;152173 93673;93674 93674 2 GVDVHALK Unmodified 837.47085 0.47085192 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 13.316 13.956 2 0.01188 3585 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 76.035 57.229 44412000 0 0 0 2332700 1713700 1808600 0 0 0 9983200 12417000 12587000 0 0 0 0 0 0 0 0 3568900 0 0 0 8221 122 8013 152174;152175;152176;152177;152178;152179;152180 93675;93676 93675 2 GVDVHALKEQMLELLQQR Unmodified 2106.1256 0.12555822 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 1 2 50.298 48.857 3;4 7.523E-14 19594 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 142.01 136.65 62544000 0 0 0 3250200 2988800 2863800 0 0 0 16640000 12261000 12610000 0 0 0 0 0 0 0 0 0 4808100 3006800 4114600 8222 122 8014 152181;152182;152183;152184;152185;152186;152187;152188;152189;152190;152191;152192;152193;152194;152195;152196;152197 93677;93678;93679;93680;93681 93679 5 GVDVSIILPR Unmodified 1067.6339 0.63389451 246 P0A6H8 clsA Cardiolipin synthase A yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.131 41.369 2 0.024471 16574 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 59.35 55.665 72432000 5231600 4817200 4210700 1477200 1059300 991840 7890200 7553200 5263000 3285900 3052700 1937700 3373800 3474600 3153900 0 0 0 4656100 4280800 4720200 0 897960 1104500 8223 246 8015 152198;152199;152200;152201;152202;152203;152204;152205;152206;152207;152208;152209;152210;152211;152212;152213;152214;152215;152216;152217 93682;93683;93684;93685;93686 93683 1 GVDVVAYANQDLVYSDLAAGR Unmodified 2195.0859 0.08586148 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 49.907 48.571 2;3 3.617E-35 23877 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 283.45 270.32 143760000 50316000 46866000 43755000 0 0 0 0 0 0 0 0 0 0 1066300 0 0 0 0 0 1759200 0 0 0 0 8224 217 8016 152218;152219;152220;152221;152222;152223;152224;152225 93687;93688;93689;93690;93691;93692;93693 93688 7 GVDVVSSFASSSTLAR Unmodified 1581.7999 0.79985021 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 38.93 37.49 2 0.026971 18241 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 72.29 68.646 171230000 61354000 58753000 51124000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8225 1464 8017 152226;152227;152228 93694 93694 0 GVEGADFIYTDVWVSMGEAK Unmodified 2173.0038 0.003771334 89 P04391 argI Ornithine carbamoyltransferase chain I yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 22.143 21.836 3 0.15889 8874 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 14.161 10.667 643510000 15242000 23021000 11499000 15639000 13991000 0 77233000 78898000 71748000 0 1574000 0 45892000 43102000 39093000 0 0 0 71119000 22514000 64671000 19523000 15245000 13508000 8226 89 8018 152229;152230;152231;152232;152233;152234;152235;152236;152237;152238;152239;152240;152241;152242;152243;152244;152245;152246;152247;152248;152249;152250;152251;152252;152253;152254;152255;152256;152257;152258;152259;152260;152261 93695;93696;93697;93698;93699 93698 5 GVEGMITTAR Unmodified 1033.5226 0.5226295 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.257 21.985 2 2.1851E-06 9070 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 144.09 116.83 2654800000 250790000 217100000 203300000 2650800 2954400 2389000 355860000 343950000 0 3952200 5089900 5510300 0 1460700 346000000 0 0 0 465160000 443470000 0 0 2821200 2326700 8227 337 8019 152262;152263;152264;152265;152266;152267;152268;152269;152270;152271;152272;152273;152274;152275;152276;152277;152278;152279;152280 93700;93701;93702;93703;93704;93705;93706;93707;93708;93709;93710;93711;93712;93713;93714;93715;93716;93717 93710 18 GVEGVTSVSDK Unmodified 1076.535 0.53496832 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.233 15.043 2 4.3402E-05 4857 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.66 111.18 10624000000 2513700000 2328000000 2229000000 3522400 2837800 2787100 570040000 593350000 589170000 0 0 0 190520000 161420000 173080000 0 0 0 411960000 433520000 420880000 0 0 0 8228 943 8020 152281;152282;152283;152284;152285;152286;152287;152288;152289;152290;152291;152292;152293;152294;152295 93718;93719;93720;93721;93722;93723;93724;93725;93726;93727;93728;93729;93730;93731;93732;93733;93734;93735 93722 18 GVEGVTSVSDKLHVR Unmodified 1581.8475 0.84746911 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 17.226 17.215 3 0.15616 5082 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 19.767 17.919 225020000 0 0 0 0 0 0 0 0 0 17651000 16197000 8175500 0 0 0 52292000 49296000 42911000 0 0 0 16235000 12192000 10068000 8229 943 8021 152296;152297;152298;152299;152300;152301;152302;152303;152304 93736 93736 1 GVEIREELTR Unmodified 1200.6463 0.64625011 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 33.634 32.232 3 0.16336 14636 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 24.838 15.939 43679000 5086800 5553700 3909600 0 0 0 3246100 0 2514400 0 0 0 4793300 3585600 2909600 0 0 0 2493000 4907100 4679600 0 0 0 8230 134 8022 152305;152306;152307;152308;152309;152310;152311;152312;152313;152314;152315 93737 93737 0 GVELAIQR Unmodified 884.50797 0.50796571 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 2 1 1 2 1 1 1 22.103 21.873 2 0.0018523 9170 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.39 65.288 456290000 10316000 72853000 66435000 0 0 0 65564000 60514000 56097000 0 0 0 9152700 7614100 40965000 0 0 0 13075000 18005000 35699000 0 0 0 8231 1244 8023 152316;152317;152318;152319;152320;152321;152322;152323;152324;152325;152326;152327;152328;152329 93738;93739;93740;93741 93739 4 GVELAPGESVPMVGVVEK Unmodified 1795.939 0.93898623 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 2 2 1 1 20.788 20.992 2;3 0.012314 19412 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 59.185 37.312 195440000 0 0 30807000 0 0 0 4722200 16502000 4471400 0 0 0 30125000 35913000 34429000 0 0 0 0 6423100 32048000 0 0 0 8232 876 8024 152330;152331;152332;152333;152334;152335;152336;152337;152338;152339;152340;152341 93742;93743;93744 93744 3 GVELAPGESVPMVGVVEKPK Unmodified 2021.0867 0.086713102 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 36.819 35.193 2;3 6.31E-14 17262 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.46 132.65 6077800000 482840000 389460000 383820000 4097800 3405900 3903400 578950000 591330000 564660000 7220900 7727400 7622200 473650000 496550000 478830000 6477900 3343100 3257900 520990000 530810000 528030000 3703300 2849000 4231700 8233 876 8025 152342;152343;152344;152345;152346;152347;152348;152349;152350;152351;152352;152353;152354;152355;152356;152357;152358;152359;152360;152361;152362;152363;152364;152365;152366;152367;152368;152369;152370;152371;152372;152373;152374;152375;152376;152377;152378 93745;93746;93747;93748;93749;93750;93751;93752;93753;93754;93755;93756;93757;93758;93759;93760;93761;93762;93763;93764;93765;93766;93767;93768;93769;93770;93771;93772;93773;93774;93775;93776;93777;93778 93755 32 GVELLSTGGTAR Unmodified 1159.6197 0.619701 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.386 23.399 2 3.1303E-08 10104 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 163.94 129.13 1220300000 363660000 330850000 314870000 1820100 583610 0 19414000 20531000 19829000 0 1108300 1448700 0 20708000 24503000 0 0 0 34844000 35668000 30502000 0 0 0 8234 1111 8026 152379;152380;152381;152382;152383;152384;152385;152386;152387;152388;152389;152390;152391;152392;152393 93779;93780;93781;93782;93783;93784;93785;93786;93787 93785 4 GVEPIYETMPGWSESTFGVK Unmodified 2213.0351 0.035071462 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 51.554 50.29 2;3 2.7635E-31 24877 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 225.32 220.23 6248200000 567590000 523700000 514210000 2450300 2376400 1415800 459330000 413210000 416230000 0 1952300 2022400 598030000 508120000 540550000 0 0 0 549090000 588630000 559270000 0 0 0 8235 333 8027 152394;152395;152396;152397;152398;152399;152400;152401;152402;152403;152404;152405;152406;152407;152408;152409;152410;152411;152412;152413;152414;152415;152416;152417;152418;152419;152420;152421;152422;152423;152424 93788;93789;93790;93791;93792;93793;93794;93795;93796;93797;93798;93799;93800;93801;93802;93803;93804;93805;93806;93807;93808;93809;93810;93811 93788 24 GVETADK Unmodified 718.34973 0.34973373 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 1 2 1 1 1 1 5.7883 6.629 2 0.015808 1160 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.381 55.555 2358800000 220680000 198420000 187970000 0 0 0 163570000 160510000 168470000 0 0 0 144150000 424710000 311210000 0 0 0 122790000 131770000 124560000 0 0 0 8236 72 8028 152425;152426;152427;152428;152429;152430;152431;152432;152433;152434;152435;152436;152437;152438;152439;152440 93812;93813;93814;93815;93816;93817;93818;93819 93813 7 GVFAAGDCTTVPYK Unmodified 1484.697 0.69696505 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.109 28.547 2 6.6385E-07 13352 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.25 118.9 3316300000 178750000 177060000 154110000 2302800 0 1166000 417000000 386900000 370500000 3050000 2861700 2727600 248180000 254330000 252440000 0 0 0 291330000 289750000 281360000 1264300 0 1209700 8237 1437 8029 152441;152442;152443;152444;152445;152446;152447;152448;152449;152450;152451;152452;152453;152454;152455;152456;152457;152458;152459 93820;93821;93822;93823;93824;93825;93826;93827;93828;93829;93830;93831;93832;93833;93834 93826 15 GVFISYQNR Unmodified 1082.5509 0.55089316 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.126 24.124 2 9.1838E-05 11058 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.24 121.95 827440000 39058000 39087000 32946000 0 0 0 68222000 68609000 61182000 0 0 0 86008000 73239000 60098000 0 0 0 105240000 91893000 101860000 0 0 0 8238 1283 8030 152460;152461;152462;152463;152464;152465;152466;152467;152468;152469;152470;152471 93835;93836;93837;93838;93839 93835 5 GVFITTSGFTSQAR Unmodified 1470.7467 0.74669243 1241 P24202 mrr Mrr restriction system protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 35.319 33.813 2 4.0682E-08 16474 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.71 131.44 125340000 0 7860200 6591200 0 0 0 16512000 16788000 15013000 0 0 0 9535300 8372300 8513700 0 0 0 13399000 11492000 11267000 0 0 0 8239 1241 8031 152472;152473;152474;152475;152476;152477;152478;152479;152480;152481;152482 93840;93841;93842;93843 93842 3 GVFLTAEGEK Unmodified 1049.5393 0.53932542 514 P0A9F1 mntR Transcriptional regulator MntR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 23.735 22.973 2 0.0084504 9868 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 65.305 50.154 23271000 5495800 5858800 3847300 0 0 0 0 0 0 0 0 0 2107800 0 0 0 0 0 2550600 0 3410300 0 0 0 8240 514 8032 152483;152484;152485;152486;152487;152488 93844;93845 93845 0 GVFNLVLGR Unmodified 973.5709 0.57090032 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 1 45.416 43.918 1;2 9.181E-08 21373 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 185.22 163.45 6681800000 1340800000 1314000000 1398600000 0 3044900 2476700 255190000 234710000 256970000 1738400 0 0 200430000 159730000 161670000 0 0 0 437650000 472890000 438780000 1386000 1673800 0 8241 1264 8033 152489;152490;152491;152492;152493;152494;152495;152496;152497;152498;152499;152500;152501;152502;152503;152504;152505;152506;152507;152508;152509;152510;152511;152512;152513;152514;152515;152516;152517;152518 93846;93847;93848;93849;93850;93851;93852;93853;93854;93855;93856;93857;93858;93859;93860;93861;93862;93863;93864 93849 18 GVFNMLLSDGR Unmodified 1207.6019 0.60194245 1973 Q47147 yafJ Putative glutamine amidotransferase YafJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.102 45.712 2 9.083E-06 22389 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 148.14 137.91 68407000 9268200 10506000 10613000 0 0 0 5163300 4820900 5285800 0 0 0 4027600 3294400 2416100 0 0 0 5197200 3771800 4041800 0 0 0 8242 1973 8034 152519;152520;152521;152522;152523;152524;152525;152526;152527;152528;152529;152530 93865;93866;93867;93868;93869;93870 93867 6 GVFPGQWAISGGGVEPGER Unmodified 1898.9275 0.92751034 1597 P52006 nudI Nucleoside triphosphatase NudI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 45.135 43.661 2 1.185E-14 21707 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 155.57 139.43 110490000 0 0 0 0 0 0 16510000 15316000 14855000 0 0 0 6292000 9638500 10483000 0 0 0 13122000 12795000 11476000 0 0 0 8243 1597 8035 152531;152532;152533;152534;152535;152536;152537;152538;152539 93871;93872;93873;93874;93875;93876;93877;93878 93871 8 GVFSSQLQLLVK Unmodified 1317.7656 0.76563696 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 47.254 45.58 2 0.04243 22556 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 51.445 39.219 39148000 0 0 0 0 0 0 9239700 10677000 0 1184400 1391800 1298100 3258300 3127700 0 0 0 0 5161300 3809700 0 0 0 0 8244 1944 8036 152540;152541;152542;152543;152544;152545;152546;152547;152548 93879 93879 0 GVFSSQLQLLVKPIAGK Unmodified 1784.056 0.056005321 1944 P77804 ydgA Protein YdgA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 46.563 44.944 2;3 1.712E-18 17977 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 217.09 217.09 1766400000 46511000 35534000 37735000 18240000 17678000 20497000 127680000 137280000 131820000 216400000 190620000 193430000 65022000 61724000 76353000 0 0 0 95615000 98553000 86656000 35116000 37298000 36603000 8245 1944 8037 152549;152550;152551;152552;152553;152554;152555;152556;152557;152558;152559;152560;152561;152562;152563;152564;152565;152566;152567;152568;152569;152570;152571;152572;152573;152574;152575;152576;152577;152578;152579;152580;152581;152582;152583;152584;152585;152586;152587;152588;152589;152590;152591 93880;93881;93882;93883;93884;93885;93886;93887;93888;93889;93890;93891;93892;93893;93894;93895;93896;93897;93898;93899;93900;93901;93902;93903;93904;93905;93906;93907;93908;93909;93910;93911 93885 32 GVFTFDPGFTSTASCESK Unmodified 1936.8513 0.85129344 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.822 43.125 2 2.9934E-17 20944 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 194.7 194.7 5354900000 1061900000 968210000 859340000 3209500 3809200 3377500 299640000 302780000 278150000 6034200 8624300 8914700 155280000 141210000 136240000 0 0 0 388940000 367680000 353750000 2436400 2294700 3019800 8246 657 8038 152592;152593;152594;152595;152596;152597;152598;152599;152600;152601;152602;152603;152604;152605;152606;152607;152608;152609;152610;152611;152612 93912;93913;93914;93915;93916;93917;93918;93919;93920;93921;93922;93923;93924;93925;93926;93927;93928;93929;93930;93931 93925 18 GVGEDISDGGNAISGAATK Unmodified 1717.8119 0.81187146 780 P0ADB7 ecnB Entericidin B yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.571 24.433 2 4.4963E-45 11074 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 249.32 240.37 1627400000 305750000 283580000 294980000 43708000 48943000 42927000 86520000 81601000 90263000 17478000 24822000 26874000 25187000 21600000 25432000 0 0 0 69698000 63317000 55051000 5832900 6795800 7055200 8247 780 8039 152613;152614;152615;152616;152617;152618;152619;152620;152621;152622;152623;152624;152625;152626;152627;152628;152629;152630;152631;152632;152633;152634;152635;152636;152637 93932;93933;93934;93935;93936;93937;93938;93939;93940;93941;93942;93943;93944;93945;93946;93947;93948 93944 17 GVGFLEAPR Unmodified 944.50797 0.50796571 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.017 28.617 2 0.00036516 13675 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 112.17 101.1 2094000000 0 0 0 1207600 0 1156000 237990000 228870000 228910000 38511000 34813000 31195000 160380000 145310000 140220000 8961600 6944400 6828700 242480000 251670000 241520000 27612000 28145000 31311000 8248 723 8040 152638;152639;152640;152641;152642;152643;152644;152645;152646;152647;152648;152649;152650;152651;152652;152653;152654;152655;152656;152657 93949;93950;93951;93952;93953;93954;93955;93956;93957;93958;93959;93960;93961;93962;93963;93964;93965;93966 93956 18 GVGFTEAPR Unmodified 932.47158 0.4715802 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 18.642 18.875 2 0.012631 5771 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 70.525 63.295 155970000 0 0 0 0 0 0 0 66466000 63346000 5561500 4467700 4193700 6028000 5908900 0 0 0 0 0 0 0 0 0 0 8249 722 8041 152658;152659;152660;152661;152662;152663;152664 93967;93968;93969 93967 0 GVGNSIPDIPDPVAR Unmodified 1505.7838 0.78380622 83 P03841 malM Maltose operon periplasmic protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 38.755 37.122 2;3 5.6284E-07 17972 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.19 111.22 3000100000 174740000 147110000 146230000 6073200 5503800 6242200 202330000 199370000 199700000 25017000 26122000 23869000 217400000 205100000 212430000 11912000 6848800 7420500 374840000 407780000 357470000 12117000 10522000 13957000 8250 83 8042 152665;152666;152667;152668;152669;152670;152671;152672;152673;152674;152675;152676;152677;152678;152679;152680;152681;152682;152683;152684;152685;152686;152687;152688;152689;152690;152691;152692;152693;152694;152695;152696;152697;152698;152699;152700 93970;93971;93972;93973;93974;93975;93976;93977;93978;93979;93980;93981;93982;93983;93984;93985 93979 15 GVGQIHPIFADR Unmodified 1308.6939 0.693869 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 1 1 1 1 2 2 2 25.725 24.497 2;3 7.3787E-09 10883 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.48 157.7 1726600000 488940000 465780000 99548000 0 0 0 151770000 156840000 153470000 3668600 3301100 2814800 5438700 7039100 6068200 0 0 0 62497000 57792000 61621000 0 0 0 8251 1194 8043 152701;152702;152703;152704;152705;152706;152707;152708;152709;152710;152711;152712;152713;152714;152715;152716;152717;152718;152719;152720;152721;152722;152723 93986;93987;93988;93989;93990;93991;93992;93993;93994;93995;93996;93997;93998;93999 93996 11 GVGQYLLEEVLR Unmodified 1374.7507 0.75071518 1474 P37613 panM PanD maturation factor yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.996 51.556 2 2.1981E-08 25732 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 168.83 143.27 495170000 39581000 47510000 38518000 0 0 0 30387000 39836000 28442000 0 0 0 42870000 38217000 37004000 0 0 0 49779000 56501000 46524000 0 0 0 8252 1474 8044 152724;152725;152726;152727;152728;152729;152730;152731;152732;152733;152734;152735 94000;94001;94002;94003;94004;94005;94006;94007;94008 94000 9 GVHAVTR Unmodified 738.41367 0.41367139 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 9.2766 9.7943 2 0.00027448 1850 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 160.17 114.42 22865000000 33249000 27743000 0 8105800 3474700 5668300 0 1545000 522510 2129700000 1870300000 1422200000 112350000 104100000 105830000 4827700000 2856400000 2528600000 124900000 119400000 89006000 2536700000 2228400000 1729600000 8253 458 8045 152736;152737;152738;152739;152740;152741;152742;152743;152744;152745;152746;152747;152748;152749;152750;152751;152752;152753;152754;152755;152756;152757;152758;152759;152760;152761;152762;152763;152764;152765;152766;152767;152768;152769;152770 94009;94010;94011;94012;94013;94014;94015;94016;94017;94018;94019;94020;94021;94022;94023;94024 94017 16 GVHEGHVAAEVIAGK Unmodified 1472.7736 0.77357588 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 6 9 6 11 8 6 9 11 4 7 4 5 4 7 4 4 4 5 8 6 11 11 11 14.571 15.146 2;3;4 3.6059E-30 4715 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 200.82 179.44 25135000000 1013400000 1306300000 1198600000 1885800000 2105100000 2446800000 1223500000 940250000 850250000 297130000 260440000 265410000 923960000 832300000 724660000 20479000 27993000 27177000 827400000 1068000000 1055100000 2064600000 2086100000 1684500000 8254 542 8046 152771;152772;152773;152774;152775;152776;152777;152778;152779;152780;152781;152782;152783;152784;152785;152786;152787;152788;152789;152790;152791;152792;152793;152794;152795;152796;152797;152798;152799;152800;152801;152802;152803;152804;152805;152806;152807;152808;152809;152810;152811;152812;152813;152814;152815;152816;152817;152818;152819;152820;152821;152822;152823;152824;152825;152826;152827;152828;152829;152830;152831;152832;152833;152834;152835;152836;152837;152838;152839;152840;152841;152842;152843;152844;152845;152846;152847;152848;152849;152850;152851;152852;152853;152854;152855;152856;152857;152858;152859;152860;152861;152862;152863;152864;152865;152866;152867;152868;152869;152870;152871;152872;152873;152874;152875;152876;152877;152878;152879;152880;152881;152882;152883;152884;152885;152886;152887;152888;152889;152890;152891;152892;152893;152894;152895;152896;152897;152898;152899;152900;152901;152902;152903;152904;152905;152906;152907;152908;152909;152910;152911;152912;152913;152914;152915;152916;152917;152918;152919;152920;152921;152922;152923;152924;152925;152926;152927;152928;152929;152930;152931;152932;152933;152934;152935;152936;152937;152938;152939;152940 94025;94026;94027;94028;94029;94030;94031;94032;94033;94034;94035;94036;94037;94038;94039;94040;94041;94042;94043;94044;94045;94046;94047;94048;94049;94050;94051;94052;94053;94054;94055;94056;94057;94058;94059;94060;94061;94062;94063;94064;94065;94066;94067;94068;94069;94070;94071;94072;94073;94074;94075;94076;94077;94078;94079;94080;94081;94082;94083;94084;94085;94086;94087;94088;94089;94090;94091;94092;94093;94094;94095;94096;94097;94098;94099;94100;94101;94102;94103;94104;94105;94106;94107;94108;94109;94110;94111;94112;94113;94114;94115;94116;94117;94118;94119;94120;94121;94122;94123;94124;94125;94126;94127;94128;94129;94130;94131;94132;94133;94134;94135;94136;94137;94138;94139;94140;94141;94142;94143;94144;94145;94146;94147 94119 116 GVHEGHVAAEVIAGKK Unmodified 1600.8685 0.8685389 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 7 6 1 2 1 5 3 3 1 2 2 3 3 3 3 2 2 7 7 7 12.492 13.038 2;3;4 9.5539E-24 2592 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 240.65 225.28 15305000000 17889000 6012200 0 1674000000 3794600000 3830200000 10350000 13843000 11677000 297480000 221380000 246780000 5231400 6745500 19551000 71701000 51045000 56482000 38137000 36032000 15642000 1690500000 1725300000 1464900000 8255 542 8047 152941;152942;152943;152944;152945;152946;152947;152948;152949;152950;152951;152952;152953;152954;152955;152956;152957;152958;152959;152960;152961;152962;152963;152964;152965;152966;152967;152968;152969;152970;152971;152972;152973;152974;152975;152976;152977;152978;152979;152980;152981;152982;152983;152984;152985;152986;152987;152988;152989;152990;152991;152992;152993;152994;152995;152996;152997;152998;152999;153000;153001;153002;153003;153004;153005;153006;153007;153008;153009;153010;153011;153012;153013;153014 94148;94149;94150;94151;94152;94153;94154;94155;94156;94157;94158;94159;94160;94161;94162;94163;94164;94165;94166;94167;94168;94169;94170;94171;94172;94173;94174;94175;94176;94177;94178;94179;94180;94181;94182;94183;94184;94185;94186;94187;94188;94189;94190 94180 39 GVHTGSR Unmodified 712.36164 0.36163582 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 3 1 1 1 1 2 2 1 1 1 1 6.3355 6.9654 2 0.003541 733 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.55 107.55 1859800000 291480000 252540000 216100000 1373800 1402500 1586300 99120 0 0 16716000 21652000 13285000 147310000 92271000 111980000 5931600 13019000 4517200 209780000 208630000 210280000 14286000 13207000 12329000 8256 376 8048 153015;153016;153017;153018;153019;153020;153021;153022;153023;153024;153025;153026;153027;153028;153029;153030;153031;153032;153033;153034;153035;153036;153037;153038;153039;153040;153041 94191;94192;94193;94194;94195;94196;94197;94198;94199;94200;94201;94202;94203;94204;94205;94206 94204 16 GVHVVEDDLLAALDSGK Unmodified 1736.8945 0.89447888 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 1 2 1 2 2 2 2 2 2 1 1 1 45.535 43.951 2;3 8.1067E-19 21341 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 231.06 225.6 1049800000 149830000 140980000 135580000 1214600 0 0 85027000 65625000 60697000 9914900 10064000 7512600 49254000 40937000 38028000 0 0 0 74650000 81043000 67616000 16039000 14227000 1581200 8257 1788 8049 153042;153043;153044;153045;153046;153047;153048;153049;153050;153051;153052;153053;153054;153055;153056;153057;153058;153059;153060;153061;153062;153063;153064;153065;153066;153067;153068;153069;153070;153071;153072;153073 94207;94208;94209;94210;94211;94212;94213;94214;94215;94216;94217;94218;94219;94220;94221;94222;94223;94224;94225;94226;94227;94228;94229;94230 94222 24 GVHVVTVNDYLAQR Unmodified 1569.8263 0.82633974 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 29.277 27.933 2;3 2.9934E-20 12921 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 270.06 266.17 1498700000 18327000 26637000 22785000 27673000 3959500 0 137650000 139680000 127290000 110740000 106700000 118780000 17611000 18886000 17149000 100410000 71782000 78309000 23009000 28304000 26259000 92766000 86762000 97253000 8258 1057 8050 153074;153075;153076;153077;153078;153079;153080;153081;153082;153083;153084;153085;153086;153087;153088;153089;153090;153091;153092;153093;153094;153095;153096;153097;153098;153099;153100;153101;153102;153103;153104;153105;153106;153107;153108;153109 94231;94232;94233;94234;94235;94236;94237;94238;94239;94240;94241;94242;94243;94244;94245;94246;94247;94248;94249;94250;94251;94252;94253;94254;94255;94256;94257;94258;94259;94260;94261;94262;94263 94255 33 GVICEKCGVEVTQTK Unmodified 1706.8331 0.83314095 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 16.25 16.34 3 0.0036837 4506 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 52.009 41.155 19998000 0 0 0 0 0 0 0 0 0 2859300 3156100 2502300 0 0 0 0 0 0 0 0 0 3954400 3262400 4263400 8259 458 8051 153110;153111;153112;153113;153114;153115 94264;94265;94266;94267;94268 94267 5 GVIDEHGYSPFWQSLGK Unmodified 1918.9214 0.92136233 831 P0AE37 astA Arginine N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 2 2 2 1 42.538 40.99 2;3 3.1648E-14 20027 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 173.76 166.03 147240000 49248000 44345000 53078000 567180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8260 831 8052 153116;153117;153118;153119;153120;153121;153122 94269;94270;94271 94271 3 GVIDYLHYYR Unmodified 1297.6455 0.64552182 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 36.9 35.105 2;3 5.7652E-13 16306 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 172.14 158.38 2348300000 274650000 223090000 227940000 642810 774650 560970 273700000 254250000 267270000 866040 809870 537880 92019000 111340000 126500000 0 0 0 193380000 180100000 117920000 786940 637820 524650 8261 1170 8053 153123;153124;153125;153126;153127;153128;153129;153130;153131;153132;153133;153134;153135;153136;153137;153138;153139;153140;153141;153142;153143;153144;153145;153146;153147;153148;153149;153150;153151;153152;153153;153154;153155 94272;94273;94274;94275;94276;94277;94278;94279;94280;94281;94282;94283;94284;94285;94286;94287;94288;94289;94290;94291;94292;94293;94294;94295 94291 24 GVIELMR Unmodified 816.45276 0.45275902 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.208 28.644 2 0.0028253 11204 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 110.54 86.74 362210000 5829900 5283300 4517600 0 0 0 6487500 0 6318300 99776000 107670000 104310000 0 3471900 5023000 0 0 0 0 7651300 5866500 0 0 0 8262 497 8054 153156;153157;153158;153159;153160;153161;153162;153163;153164;153165;153166;153167 94296;94297;94298 94296 3 GVIHWVSAAHALPVEIR Unmodified 1854.0264 0.026436528 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 1 3 3 3 3 3 3 36.578 34.973 2;3;4 1.6569E-24 16889 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 243.85 235.54 4137600000 321070000 296880000 245900000 0 0 827460 415660000 390020000 399110000 0 0 527150 287440000 305510000 287770000 0 0 0 402280000 402800000 381870000 0 0 0 8263 63 8055 153168;153169;153170;153171;153172;153173;153174;153175;153176;153177;153178;153179;153180;153181;153182;153183;153184;153185;153186;153187;153188;153189;153190;153191;153192;153193;153194;153195;153196;153197;153198;153199;153200;153201;153202;153203;153204;153205 94299;94300;94301;94302;94303;94304;94305;94306;94307;94308;94309;94310;94311;94312;94313;94314;94315;94316;94317;94318;94319;94320;94321;94322 94313 24 GVILPLR Unmodified 766.50651 0.50650915 1223 P23871 hemH Ferrochelatase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 2 1 1 1 1 1 1 1 31.588 29.958 2 0.0058251 14335 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.03 49.788 48387000 0 4180700 4395300 0 0 0 5058000 6352400 5410100 3217000 2075200 0 2197200 0 0 0 0 0 5487500 5373200 4640400 0 0 0 8264 1223 8056 153206;153207;153208;153209;153210;153211;153212;153213;153214;153215;153216;153217 94323;94324;94325;94326 94324 2 GVILTGDNPR Unmodified 1040.5615 0.56145784 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.857 19.232 2 0.00014418 7295 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.41 93.571 167640000 6717400 6875800 4869300 2104300 2241500 1928500 18782000 15388000 18954000 5583100 3956500 5010500 13150000 11628000 13403000 0 0 0 10146000 10738000 10031000 1960700 1810600 2357900 8265 1475 8057 153218;153219;153220;153221;153222;153223;153224;153225;153226;153227;153228;153229;153230;153231;153232;153233;153234;153235;153236;153237;153238 94327;94328;94329;94330;94331 94327 5 GVIQHLDYLHK Unmodified 1321.7143 0.71427009 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 2 2 2 2 3 2 1 1 20.669 20.986 2;3 2.0082E-10 8244 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 192.64 159.75 6543800000 14163000 13866000 10159000 0 0 0 611520000 554550000 600230000 0 0 2249400 749540000 708780000 607710000 0 0 0 758930000 926630000 976880000 4621600 3979700 0 8266 1324 8058 153239;153240;153241;153242;153243;153244;153245;153246;153247;153248;153249;153250;153251;153252;153253;153254;153255;153256;153257;153258;153259;153260;153261;153262;153263 94332;94333;94334;94335;94336;94337;94338;94339;94340;94341;94342;94343;94344;94345;94346;94347;94348 94340 17 GVIRDDFDPAR Unmodified 1259.6258 0.62584901 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 21.165 21.664 2 3.1804E-05 8618 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.08 117.11 28237000 9565600 9701200 8970200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8267 49 8059 153264;153265;153266 94349;94350;94351 94350 3 GVISFEK Unmodified 778.4225 0.42250475 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.851 21.898 2 0.0078297 9320 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.673 46.9 616910000 35356000 29504000 23466000 0 0 0 79668000 62712000 52852000 0 0 0 44950000 44563000 41796000 0 0 0 70706000 71371000 59968000 0 0 0 8268 412 8060 153267;153268;153269;153270;153271;153272;153273;153274;153275;153276;153277;153278 94352;94353;94354;94355;94356;94357;94358;94359 94352 8 GVIVAMTLEEAEAAVHDMLAGNAFGDAGHR Unmodified 3051.4542 0.45423894 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.443 53.995 4 1.5645E-31 26571 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 185.7 185.42 602970000 176590000 153290000 171130000 0 0 0 0 5346400 0 0 0 0 13494000 11430000 14222000 0 0 0 19966000 19494000 18011000 0 0 0 8269 1112 8061 153279;153280;153281;153282;153283;153284;153285;153286;153287;153288 94360;94361;94362 94362 3 GVIVPIVDLR Unmodified 1079.6703 0.67028001 493 P0A964 cheW Chemotaxis protein CheW yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 45.431 43.898 2 0.00021725 21273 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.54 131.32 611760000 184250000 182990000 185100000 17290000 18891000 16030000 2379900 0 0 944270 0 0 0 0 0 0 0 0 0 2053700 1829500 0 0 0 8270 493 8062 153289;153290;153291;153292;153293;153294;153295;153296;153297;153298 94363;94364;94365;94366;94367;94368;94369;94370;94371 94370 6 GVIVQYGGQTPLK Unmodified 1358.7558 0.75580056 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.007 27.861 2 7.079E-09 12795 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 166.34 150.75 1818500000 418600000 376100000 369290000 1661600 1718400 2189900 8739400 7408000 0 0 0 0 43953000 46475000 42009000 2363800 997940 1449500 159690000 160050000 158690000 5359700 5559700 6169100 8271 65 8063 153299;153300;153301;153302;153303;153304;153305;153306;153307;153308;153309;153310;153311;153312;153313;153314;153315;153316;153317;153318 94372;94373;94374;94375;94376;94377;94378;94379;94380;94381;94382;94383;94384;94385 94378 14 GVIYAGNLSR Unmodified 1048.5665 0.56654322 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.216 22.489 2 2.4973E-05 9265 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 147.29 93.735 487850000 9164800 7020100 6054700 0 4899300 4820800 37403000 38327000 33799000 27178000 24428000 15058000 23681000 23587000 24385000 5095300 2542600 4559100 45313000 48226000 52376000 16922000 14505000 18509000 8272 1492 8064 153319;153320;153321;153322;153323;153324;153325;153326;153327;153328;153329;153330;153331;153332;153333;153334;153335;153336;153337;153338;153339;153340;153341 94386;94387;94388;94389;94390;94391;94392;94393;94394;94395;94396;94397 94395 9 GVIYQGR Unmodified 791.42899 0.42898711 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 2 1 1 2 1 2 13.9 14.521 2 0.0086334 4391 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.627 73.69 1049200000 0 128980000 113300000 2305300 1840500 1893800 132140000 121050000 102420000 3826300 2507800 3635900 76975000 32545000 65627000 16147000 11266000 13649000 84090000 54568000 54178000 10223000 5926400 10149000 8273 1872 8065 153342;153343;153344;153345;153346;153347;153348;153349;153350;153351;153352;153353;153354;153355;153356;153357;153358;153359;153360;153361;153362;153363;153364;153365;153366;153367;153368;153369;153370;153371;153372 94398;94399;94400;94401;94402;94403;94404;94405 94405 8 GVKPGDSVAVALPR Unmodified 1364.7776 0.77759863 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 2 2 2 2 2 23.257 22.528 2;3 5.4512E-06 9196 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 83.204 81.735 185470000 7400200 7119400 5987400 0 0 0 11803000 8442400 9313100 0 0 0 20461000 15428000 17866000 0 0 0 24633000 27869000 29148000 0 0 0 8274 1070 8066 153373;153374;153375;153376;153377;153378;153379;153380;153381;153382;153383;153384;153385;153386;153387;153388;153389;153390;153391 94406;94407;94408;94409;94410;94411;94412;94413;94414;94415;94416;94417;94418;94419 94418 14 GVLAVMPDMDK Unmodified 1174.5726 0.57261616 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 37.399 35.774 2 0.0022154 17368 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 74.376 68.595 131510000 9005500 8038600 10567000 0 0 0 0 12756000 11538000 0 0 0 11818000 11935000 11507000 0 0 0 16670000 13957000 13713000 0 0 0 8275 107 8067 153392;153393;153394;153395;153396;153397;153398;153399;153400;153401;153402 94420;94421;94422 94421 0 GVLAVMPDMDKFPYTVR Unmodified 1937.9743 0.97432588 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 2 3 2 1 1 2 47.537 46.108 2;3 7.6869E-14 22330 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 206.1 202.38 2017500000 119930000 111400000 103230000 12004000 12955000 11539000 165250000 174530000 153960000 6913900 7237500 6833300 185680000 166550000 152760000 0 2155000 0 196140000 206460000 204980000 5118300 5705900 6189700 8276 107 8068 153403;153404;153405;153406;153407;153408;153409;153410;153411;153412;153413;153414;153415;153416;153417;153418;153419;153420;153421;153422;153423;153424;153425;153426;153427;153428;153429;153430;153431;153432;153433;153434;153435;153436;153437;153438;153439;153440;153441;153442 94423;94424;94425;94426;94427;94428;94429;94430;94431;94432;94433;94434;94435;94436;94437;94438;94439;94440;94441;94442;94443;94444;94445;94446;94447;94448;94449;94450;94451 94437 29 GVLDQTR Unmodified 787.41882 0.41881635 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.698 14.616 2 0.0071597 4356 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 92.467 32.173 842180000 100930000 0 70806000 3280600 3814600 3355700 69037000 72043000 82872000 0 0 0 47012000 46566000 44838000 0 0 0 107890000 96786000 92944000 0 0 0 8277 1218 8069 153443;153444;153445;153446;153447;153448;153449;153450;153451;153452;153453;153454;153455;153456 94452;94453;94454;94455 94455 4 GVLEQAGVNVDSVILPDGEQYK Unmodified 2329.1802 0.1801558 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.215 47.851 2 9.4309E-28 22568 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 184.99 180.08 92115000 9821000 6720000 8939800 0 0 0 10048000 8541900 8053800 0 0 0 6398200 6123500 5325300 0 0 0 7711500 6576700 7855500 0 0 0 8278 164 8070 153457;153458;153459;153460;153461;153462;153463;153464;153465;153466;153467;153468 94456;94457;94458 94458 3 GVLFLVDTWGGSPFNAASR Unmodified 1993.0058 0.005760665 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 2 3 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 1 2 2 2 55.016 53.672 2;3 3.3924E-45 21485 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 309.93 306.08 1339500000 3042600 0 17179000 14620000 19291000 17903000 58945000 53550000 57974000 131340000 112650000 146520000 34850000 27227000 26506000 133500000 144640000 181400000 30775000 32018000 5875900 32117000 27030000 30547000 8279 1745 8071 153469;153470;153471;153472;153473;153474;153475;153476;153477;153478;153479;153480;153481;153482;153483;153484;153485;153486;153487;153488;153489;153490;153491;153492;153493;153494;153495;153496;153497;153498;153499;153500;153501;153502;153503;153504;153505;153506;153507 94459;94460;94461;94462;94463;94464;94465;94466;94467;94468;94469;94470 94459 10 GVLFNSGEFNGLDHEAAFNAIADK Unmodified 2535.203 0.2030165 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 2 1 2 2 2 2 1 1 47.63 46.088 2;3 1.3084E-31 22969 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 202.6 192.61 1861400000 181240000 179070000 152750000 0 0 1335400 168930000 157640000 138750000 11560000 10213000 7637700 152690000 6170400 118580000 0 0 0 183070000 194590000 194550000 1189300 0 1432700 8280 170 8072 153508;153509;153510;153511;153512;153513;153514;153515;153516;153517;153518;153519;153520;153521;153522;153523;153524;153525;153526;153527;153528;153529;153530;153531;153532;153533;153534;153535;153536;153537;153538;153539 94471;94472;94473;94474;94475;94476;94477;94478;94479;94480;94481 94471 10 GVLGYTEDDVVSTDFNGEVCTSVFDAK Unmodified 2923.3069 0.30694881 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 3 3 2 1 2 3 53.776 52.447 2;3 1.3238E-22 24910 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 122.41 114.11 167250000 7263200 5849600 0 3251700 4488000 0 0 0 0 0 0 0 30196000 35303000 10386000 0 0 0 9763900 23860000 36888000 0 0 0 8281 504 8073 153540;153541;153542;153543;153544;153545;153546;153547;153548;153549;153550;153551;153552;153553;153554;153555;153556;153557;153558;153559 94482;94483;94484;94485;94486;94487;94488;94489 94483 6 GVLHTTGGYLVYAALTFK Unmodified 1910.0302 0.030184501 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 3 3 3 48.716 47.444 2;3 6.5452E-18 23194 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 208.27 202.67 154120000 51106000 56537000 46480000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8282 1305 8074 153560;153561;153562;153563;153564;153565;153566;153567;153568 94490;94491;94492;94493;94494;94495;94496 94491 6 GVLIVPVNTLMQR Unmodified 1438.833 0.83300502 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.704 46.289 2 9.831E-07 22397 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.55 117.73 169460000 21310000 23094000 20282000 0 0 0 10879000 12131000 11971000 0 0 0 8713400 11680000 10836000 0 0 0 13841000 12225000 12503000 0 0 0 8283 1355 8075 153569;153570;153571;153572;153573;153574;153575;153576;153577;153578;153579;153580 94497;94498;94499;94500;94501;94502;94503;94504;94505;94506;94507;94508 94502 12 GVLKPGVELVEPTSGNTGIALAYVAAAR Unmodified 2752.5123 0.51232939 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 1 1 3 4 3 2 1 1 4 4 3 4 3 4 1 1 48.308 46.878 2;3;4 1.1104E-79 23229 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 326.18 322.66 11350000000 1202500000 1114800000 1088300000 10024000 0 12536000 1055100000 1054700000 1081100000 8358800 6232300 6312700 615440000 778700000 606170000 0 0 0 897540000 957400000 844840000 5410800 4635700 0 8284 666 8076 153581;153582;153583;153584;153585;153586;153587;153588;153589;153590;153591;153592;153593;153594;153595;153596;153597;153598;153599;153600;153601;153602;153603;153604;153605;153606;153607;153608;153609;153610;153611;153612;153613;153614;153615;153616;153617;153618;153619;153620;153621;153622;153623;153624;153625;153626;153627;153628;153629;153630 94509;94510;94511;94512;94513;94514;94515;94516;94517;94518;94519;94520;94521;94522;94523;94524;94525;94526;94527;94528;94529;94530;94531;94532;94533;94534;94535;94536;94537;94538;94539;94540;94541;94542;94543;94544;94545;94546;94547;94548;94549;94550;94551;94552;94553;94554;94555;94556;94557;94558;94559;94560;94561;94562;94563;94564 94515 54 GVLMVGPPGTGK Unmodified 1111.606 0.6059652 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.973 27.667 2 1.6122E-05 10749 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 125.48 122.02 925050000 20538000 23740000 22632000 14046000 13088000 12283000 80357000 92719000 90118000 28252000 32430000 31626000 52822000 54197000 51159000 8227200 4758200 4919300 79164000 77270000 71648000 21807000 19812000 17442000 8285 595 8077 153631;153632;153633;153634;153635;153636;153637;153638;153639;153640;153641;153642;153643;153644;153645;153646;153647;153648;153649;153650;153651;153652;153653;153654 94565;94566;94567;94568;94569;94570;94571;94572;94573;94574;94575;94576;94577 94567 13 GVLNDLAK Unmodified 828.47052 0.47051757 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 2 1 1 1 2 2 2 1 2 1 1 1 2 1 1 1 1 1 31.551 30.058 1;2 0.036268 10235 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 68.915 51.644 1713900000 240210000 202840000 4069300 103390000 98182000 102160000 5699500 279580000 268270000 7649500 2554600 7377500 3383200 3106300 3548500 0 0 0 102410000 5891300 4464800 82606000 92573000 93956000 8286 1662 8078 153655;153656;153657;153658;153659;153660;153661;153662;153663;153664;153665;153666;153667;153668;153669;153670;153671;153672;153673;153674;153675;153676;153677;153678;153679;153680;153681;153682 94578;94579 94578 1 GVLNLQSNMPDTKPGLYEPTSPPIITDK Unmodified 3024.5478 0.5477882 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.517 42.787 3 1.455E-07 21253 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.565 92.59 150000000 12594000 9875200 0 6514700 5033700 5005500 0 6442800 10325000 5879700 8519200 7397000 9849300 5336100 5097800 0 0 0 15688000 14617000 10275000 3961800 3145800 4439300 8287 1115 8079 153683;153684;153685;153686;153687;153688;153689;153690;153691;153692;153693;153694;153695;153696;153697;153698;153699;153700;153701 94580;94581;94582;94583;94584;94585;94586 94583 7 GVLPTCQDTGTAIIVGK Unmodified 1728.908 0.90802046 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.922 35.072 2 1.1004E-09 17178 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.39 113.54 2702300000 325070000 306880000 316320000 3994400 3825400 4063500 205330000 195520000 169240000 5792200 4370100 2499700 189770000 181600000 183400000 0 0 0 204850000 190900000 199800000 2469400 2985500 3560400 8288 696;1097 8080 153702;153703;153704;153705;153706;153707;153708;153709;153710;153711;153712;153713;153714;153715;153716;153717;153718;153719;153720;153721;153722 94587;94588;94589;94590;94591;94592 94591 4 GVLQLAVK Unmodified 826.52764 0.52763852 1752 P69831 gatC Galactitol permease IIC component yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.352 27.127 2 0.0033714 12386 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.692 49.626 252860000 24085000 0 20629000 0 0 0 43294000 47785000 47199000 14839000 11974000 10632000 25707000 0 0 1727800 1503400 1766100 0 0 1720300 0 0 0 8289 1752 8081 153723;153724;153725;153726;153727;153728;153729;153730;153731;153732;153733;153734;153735 94593;94594;94595;94596;94597;94598;94599 94598 6 GVLTNLGAVAVDTGIFTGR Unmodified 1860.0105 0.010511692 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.25 52.801 2;3 3.6926E-45 25865 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 322.02 297.73 5407900000 778190000 727950000 625660000 0 0 0 379350000 309100000 276860000 0 0 0 370390000 308600000 339700000 0 0 0 430780000 424690000 436600000 0 0 0 8290 1195 8082 153736;153737;153738;153739;153740;153741;153742;153743;153744;153745;153746;153747;153748;153749;153750;153751;153752;153753;153754;153755;153756;153757;153758;153759 94600;94601;94602;94603;94604;94605;94606;94607;94608;94609;94610;94611;94612;94613;94614;94615;94616;94617;94618;94619;94620;94621;94622;94623 94608 24 GVLVNITAGFDLR Unmodified 1373.7667 0.76669959 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 1 1 1 2 1 2 51.613 50.304 2 5.1791E-07 20071 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 146.11 122.79 90143000 0 0 0 5954500 5649100 6268600 6363900 5291700 5363800 8937900 12732000 12285000 4362200 0 3640000 1097400 0 0 0 0 0 5551800 2404200 4240600 8291 502 8083 153760;153761;153762;153763;153764;153765;153766;153767;153768;153769;153770;153771;153772;153773;153774;153775;153776;153777;153778;153779;153780;153781 94624;94625;94626;94627;94628;94629;94630;94631;94632;94633;94634;94635;94636;94637;94638 94628 8 GVLVVMNDTVLDGR Unmodified 1486.7814 0.78136338 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1 44.425 42.774 2 1.8158E-14 19857 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 189.72 163.27 2174600000 0 0 0 0 0 0 475490000 441570000 399120000 0 0 0 311170000 272060000 275190000 0 0 0 0 0 0 0 0 0 8292 40 8084 153782;153783;153784;153785;153786;153787;153788;153789;153790 94639;94640;94641;94642;94643;94644;94645;94646 94643 6 GVLVVMNDTVLDGR Oxidation (M) 1502.7763 0.776278 40 P00805 ansB L-asparaginase 2 yes yes 0 1 0 By MS/MS By matching By matching 1 1 1 37.103 35.115 2 0.0080819 17425 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 60.691 45.119 19050000 0 0 0 0 0 0 6471800 0 7259000 0 0 0 0 0 0 0 0 0 5318700 0 0 0 0 0 8293 40 8084 153791;153792;153793 94647 94647 26 0 GVLYSVRPEAR Unmodified 1245.683 0.68296996 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 18.278 18.255 2;3 6.866E-09 5185 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 180.09 172.05 3862900000 0 0 0 0 0 0 0 0 0 171500000 178920000 158370000 0 0 0 702740000 571720000 758290000 0 0 0 501220000 434300000 385840000 8294 935 8085 153794;153795;153796;153797;153798;153799;153800;153801;153802;153803;153804;153805;153806;153807;153808;153809;153810;153811 94648;94649;94650;94651;94652;94653;94654;94655;94656;94657;94658;94659;94660;94661;94662 94648 13 GVMAALLTPFDQQQALDK Unmodified 1944.9979 0.9978981 259 P0A6L4 nanA N-acetylneuraminate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 52.891 51.491 2;3 3.1274E-29 24159 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 217.09 211.81 418950000 56617000 56658000 52969000 0 0 0 14293000 13159000 6858700 0 0 0 40985000 39599000 37837000 0 0 0 33574000 32274000 34122000 0 0 0 8295 259 8086 153812;153813;153814;153815;153816;153817;153818;153819;153820;153821;153822;153823;153824;153825;153826;153827;153828;153829;153830;153831;153832;153833 94663;94664;94665;94666;94667;94668;94669;94670;94671;94672;94673;94674;94675 94675 13 GVMFTGSTEVATLLQR Unmodified 1708.8818 0.8818057 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 2 49.028 47.617 2;3 2.5171E-14 18805 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 215.08 207.51 491230000 5333200 14071000 15137000 12223000 15745000 14957000 17383000 13538000 5944200 33633000 33431000 32513000 13403000 3665000 11160000 0 0 0 48383000 47021000 42972000 39787000 36837000 34094000 8296 215 8087 153834;153835;153836;153837;153838;153839;153840;153841;153842;153843;153844;153845;153846;153847;153848;153849;153850;153851;153852;153853;153854;153855;153856;153857;153858;153859;153860;153861;153862;153863;153864;153865;153866;153867;153868;153869;153870;153871;153872 94676;94677;94678;94679;94680;94681;94682;94683;94684;94685;94686;94687;94688;94689;94690;94691;94692;94693;94694;94695;94696;94697;94698;94699 94684 23 GVMLQTLDSLWK Unmodified 1389.7326 0.73262227 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.721 51.579 2 4.4487E-14 25451 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 163.94 131.19 1749000000 91539000 81021000 82735000 9443100 10748000 9616100 92910000 0 0 97238000 113790000 114540000 84707000 81214000 77571000 106290000 102970000 102950000 119090000 99048000 101040000 50455000 59767000 60329000 8297 1057 8088 153873;153874;153875;153876;153877;153878;153879;153880;153881;153882;153883;153884;153885;153886;153887;153888;153889;153890;153891;153892;153893;153894;153895;153896 94700;94701;94702;94703;94704;94705;94706;94707;94708;94709;94710;94711;94712;94713;94714;94715;94716;94717;94718;94719;94720;94721;94722 94707 23 GVMVLDDEDR Unmodified 1147.5179 0.51793805 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 26.433 25.176 2 0.001 11545 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 87.308 78.445 43118000 0 0 0 0 0 0 12488000 11481000 12895000 0 0 0 3756400 0 2498500 0 0 0 0 0 0 0 0 0 8298 348 8089 153897;153898;153899;153900;153901 94723;94724;94725 94725 3 GVMVNALSLAAR Unmodified 1200.6649 0.66487706 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.016 36.334 2 2.1642E-06 17620 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.7 127.82 629510000 71581000 82454000 69146000 0 467530 588950 44438000 51936000 53500000 0 0 0 56216000 50962000 51303000 0 0 0 31147000 33290000 32482000 0 0 0 8299 1333 8090 153902;153903;153904;153905;153906;153907;153908;153909;153910;153911;153912;153913;153914;153915 94726;94727;94728;94729;94730;94731;94732;94733;94734;94735;94736;94737 94732 12 GVNAIELMHDAIGHILQLR Unmodified 2099.131 0.13097795 1229 P23908 argE Acetylornithine deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 54.998 53.552 3;4 9.7595E-08 26354 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.22 110.22 386000000 49951000 46411000 50835000 1825200 1415900 2642600 37248000 23642000 24123000 1474600 0 1629100 22388000 17421000 12222000 0 0 0 19236000 24217000 20911000 12279000 9762000 6369900 8300 1229 8091 153916;153917;153918;153919;153920;153921;153922;153923;153924;153925;153926;153927;153928;153929;153930;153931;153932;153933;153934;153935;153936;153937 94738;94739;94740;94741 94741 3 GVNANHIIR Unmodified 992.55156 0.55156186 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.397 13.069 2 8.4368E-08 3461 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 186.67 147.01 5142600000 104750000 98905000 101550000 2523000 2196600 2095600 576700000 688470000 639900000 2275700 2600600 2629000 524370000 507490000 545800000 2456300 0 0 446880000 479790000 402770000 2333800 3309600 2813400 8301 239 8092 153938;153939;153940;153941;153942;153943;153944;153945;153946;153947;153948;153949;153950;153951;153952;153953;153954;153955;153956;153957;153958;153959 94742;94743;94744;94745;94746;94747;94748;94749;94750;94751;94752;94753;94754 94753 13 GVNITLGLPFIR Unmodified 1298.7711 0.77105669 1158 P19624 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.865 52.44 2 5.8993E-05 25786 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.4 105.09 68729000 9303900 8505100 11153000 0 0 0 2606800 2633000 0 0 0 0 6855600 4551800 3000100 0 0 0 6856900 7833600 5428500 0 0 0 8302 1158 8093 153960;153961;153962;153963;153964;153965;153966;153967;153968;153969;153970 94755 94755 1 GVNLPGVSIALPALAEK Unmodified 1647.956 0.95595693 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.823 51.483 2;3 6.5448E-05 25216 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.021 77.896 9889000000 1027700000 812590000 698050000 0 0 0 1008900000 996070000 860690000 0 0 0 788430000 703300000 665310000 0 0 0 828420000 766210000 733340000 0 0 0 8303 771 8094 153971;153972;153973;153974;153975;153976;153977;153978;153979;153980;153981;153982;153983;153984;153985;153986;153987;153988;153989;153990;153991;153992;153993;153994 94756;94757;94758;94759;94760;94761;94762;94763;94764;94765;94766;94767;94768;94769 94764 12 GVNVLADAVK Unmodified 984.5604 0.56039521 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.804 26.589 2 0.00071946 12457 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 88.948 56.107 21254000000 2344100000 1882300000 1908600000 53276000 56946000 49331000 1652300000 1711800000 1628500000 56909000 51884000 45640000 1308900000 1146700000 1174000000 22670000 19329000 21894000 2008800000 2019700000 1925400000 59445000 51039000 54097000 8304 240 8095 153995;153996;153997;153998;153999;154000;154001;154002;154003;154004;154005;154006;154007;154008;154009;154010;154011;154012;154013;154014;154015;154016;154017;154018;154019 94770;94771;94772;94773;94774;94775;94776;94777;94778;94779;94780;94781;94782;94783;94784;94785;94786;94787;94788;94789;94790;94791;94792;94793;94794;94795;94796 94780 25 GVNVVALYGGQR Unmodified 1231.6673 0.6673199 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.819 30.386 2 0.00010057 12005 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 88.819 72.937 97805000 11509000 6988800 7757300 1761700 1293300 1572000 3089100 0 3142400 3942600 2007600 2077700 4880100 2498200 3220000 2000300 0 1368300 10225000 11353000 9997600 1968000 2349000 2803900 8305 544 8096 154020;154021;154022;154023;154024;154025;154026;154027;154028;154029;154030;154031;154032;154033;154034;154035;154036;154037;154038;154039;154040;154041 94797;94798;94799 94797 2 GVNVVLTTGR Unmodified 1014.5822 0.58219329 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.166 22.437 2 0.00042081 9133 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 104.2 90.82 369170000 26711000 26485000 22840000 0 0 0 37378000 37462000 38511000 0 0 0 26932000 24209000 25687000 0 0 0 32260000 35557000 35136000 0 0 0 8306 473 8097 154042;154043;154044;154045;154046;154047;154048;154049;154050;154051;154052;154053 94800;94801;94802;94803;94804;94805;94806;94807;94808 94808 3 GVPVVMK Unmodified 728.42548 0.42548163 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 18.08 18.583 2 0.11564 7037 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.036 38.776 173490000 49996000 70333000 52332000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 825690 0 8307 1173 8098 154054;154055;154056;154057 94809;94810;94811 94809 2 GVQCDLAMIGSK Unmodified 1277.6108 0.61079258 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.236 28.842 2 2.103E-05 9503 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 121.83 117.38 1916900000 63159000 58427000 55351000 7624700 7663600 6793100 161780000 139110000 138730000 41231000 41408000 35545000 144580000 148590000 162310000 9611900 7194300 8250900 191290000 200730000 188070000 33567000 34968000 30949000 8308 644 8099 154058;154059;154060;154061;154062;154063;154064;154065;154066;154067;154068;154069;154070;154071;154072;154073;154074;154075;154076;154077;154078;154079;154080;154081 94812;94813;94814;94815;94816;94817;94818;94819;94820;94821;94822;94823 94814 12 GVQLAEFYR Unmodified 1081.5556 0.55564418 1395 P32664 nudC NADH pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.88 32.414 2 3.7097E-05 15451 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155.75 130.02 102730000 16723000 15767000 14977000 1538000 1008700 0 6257500 6456900 7063700 0 0 0 3287200 4871200 3164200 0 0 0 7599700 7363900 6649500 0 0 0 8309 1395 8100 154082;154083;154084;154085;154086;154087;154088;154089;154090;154091;154092;154093;154094;154095 94824;94825;94826;94827;94828;94829;94830;94831;94832;94833;94834;94835 94830 9 GVQLEDGPAAFK Unmodified 1230.6245 0.62445203 1498 P37765 rluB Ribosomal large subunit pseudouridine synthase B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 29.377 27.915 2 0.00079401 12951 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.584 80.221 81835000 17464000 16892000 0 0 835700 822880 7131200 5061900 7073100 0 1256900 883580 0 0 3832800 0 0 0 5526200 8071700 6984000 0 0 0 8310 1498 8101 154096;154097;154098;154099;154100;154101;154102;154103;154104;154105;154106;154107;154108 94836;94837;94838;94839;94840 94839 0 GVQLHNEK Unmodified 923.48248 0.48247924 574 P0AA43 rsuA Ribosomal small subunit pseudouridine synthase A yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 9.9088 10.729 2 0.056295 2411 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 63.306 55.635 60434000 17936000 20390000 18757000 0 0 0 0 0 0 0 0 0 1622800 933370 793690 0 0 0 0 0 0 0 0 0 8311 574 8102 154109;154110;154111;154112;154113;154114 94841 94841 0 GVQLHNEKDLTKPAVLEVITPTQVR Unmodified 2784.5498 0.54977753 574 P0AA43 rsuA Ribosomal small subunit pseudouridine synthase A yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 33.411 31.427 4 0.15666 10869 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 18.904 18.904 25653000 0 0 0 2418100 2467900 2816800 0 0 0 3103600 3446500 4155000 0 0 0 0 0 0 0 0 0 2102100 2487300 2656000 8312 574 8103 154115;154116;154117;154118;154119;154120;154121;154122;154123 94842;94843 94842 2 GVQPIAWGDALR Unmodified 1281.683 0.68296996 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.136 38.248 2 8.466E-06 18610 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 157.66 138.39 761190000 10313000 7223200 7565500 0 0 0 133600000 119060000 130520000 4678700 3143300 3990900 67846000 58506000 66407000 0 0 0 48357000 49530000 46622000 1538100 1136000 1161800 8313 506 8104 154124;154125;154126;154127;154128;154129;154130;154131;154132;154133;154134;154135;154136;154137;154138;154139;154140;154141 94844;94845;94846;94847;94848;94849;94850;94851;94852 94847 9 GVQSILQR Unmodified 899.51886 0.51886475 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.475 21.551 2 1.459E-05 8242 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 178.08 102.77 6622300000 149520000 159830000 143460000 63372000 71083000 64832000 471300000 506750000 607060000 254910000 180340000 155730000 474880000 479060000 485860000 62535000 48601000 51357000 578840000 606940000 480030000 184090000 177750000 164180000 8314 646 8105 154142;154143;154144;154145;154146;154147;154148;154149;154150;154151;154152;154153;154154;154155;154156;154157;154158;154159;154160;154161;154162;154163;154164;154165 94853;94854;94855;94856;94857;94858;94859;94860;94861;94862;94863;94864;94865;94866;94867;94868;94869;94870;94871;94872;94873;94874;94875;94876;94877 94876 24 GVQTNMVYHGNQVALTYEIPMAEVVLDFFDR Unmodified 3555.7167 0.71666122 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 55.852 55.908 3 1.0436E-07 21244 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 86.191 81.614 49071000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13554000 17199000 18318000 0 0 0 0 0 0 8315 1633 8106 154166;154167;154168 94878 94878 1 GVQWIPDWGQAR Unmodified 1411.6997 0.69968266 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.53 44.09 2;3 5.787E-06 21321 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.01 125.23 2955500000 328310000 314160000 284610000 0 0 0 201840000 205870000 204670000 0 0 0 188610000 202730000 184840000 0 0 0 255660000 291450000 292720000 0 0 0 8316 58 8107 154169;154170;154171;154172;154173;154174;154175;154176;154177;154178;154179;154180;154181;154182;154183;154184;154185;154186;154187;154188;154189;154190;154191;154192 94879;94880;94881;94882;94883;94884;94885;94886;94887;94888;94889;94890;94891;94892;94893;94894;94895;94896;94897;94898;94899;94900;94901;94902 94889 22 GVRPTVR Unmodified 783.47152 0.47152062 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.542 11.06 2 0.0014798 2093 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 143.02 65.645 4357100000 573380000 537040000 476270000 0 0 0 228570000 190160000 211000000 55844000 43603000 39782000 96849000 265130000 265800000 42713000 19762000 20260000 414120000 351130000 356240000 56741000 63508000 49217000 8317 1620 8108 154193;154194;154195;154196;154197;154198;154199;154200;154201;154202;154203;154204;154205;154206;154207;154208;154209;154210;154211;154212;154213 94903;94904;94905;94906;94907;94908;94909;94910;94911;94912;94913;94914;94915;94916;94917;94918;94919 94903 17 GVSACATCDGFFYR Unmodified 1609.6653 0.66534734 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 34.01 32.546 2 3.4192E-35 14928 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 262.61 262.61 1117100000 115130000 120030000 109690000 0 737850 0 76964000 75194000 68621000 0 0 0 105140000 81737000 78516000 0 0 0 103330000 97275000 84724000 0 0 0 8318 543 8109 154214;154215;154216;154217;154218;154219;154220;154221;154222;154223;154224;154225;154226 94920;94921;94922;94923;94924;94925;94926;94927;94928;94929;94930;94931 94929 12 GVSADQISIVSYGK Unmodified 1422.7355 0.73545904 481 P0A912 pal Peptidoglycan-associated lipoprotein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.177 31.716 2 3.9084E-11 14942 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 172.17 165.91 453740000 33602000 28764000 23817000 2748900 2799600 2704000 17428000 20138000 19377000 5807800 4528000 4559500 27941000 29117000 24472000 2325300 783150 1062700 57089000 65979000 63525000 5872700 4135300 5166700 8319 481 8110 154227;154228;154229;154230;154231;154232;154233;154234;154235;154236;154237;154238;154239;154240;154241;154242;154243;154244;154245;154246;154247;154248;154249;154250 94932;94933;94934;94935;94936;94937;94938;94939;94940;94941;94942;94943;94944;94945;94946;94947;94948;94949 94943 18 GVSEAKAAGK Unmodified 916.49779 0.49779495 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 1 By MS/MS By matching 1 1 5.7129 6.5904 2 0.059669 1508 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 55.676 2.9929 4373300 0 0 0 0 0 0 3665600 0 0 0 0 0 0 707730 0 0 0 0 0 0 0 0 0 0 8320 1652 8111 154251;154252 94950 94950 1 GVSFEIEHVEK Unmodified 1272.635 0.63501672 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 23.292 22.713 2;3 8.0392E-05 10166 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 115.82 111.66 2441500000 218460000 196740000 168690000 0 0 0 205280000 190890000 191500000 0 0 0 197910000 184920000 186610000 47629000 39718000 36635000 157860000 197490000 221160000 0 0 0 8321 712 8112 154253;154254;154255;154256;154257;154258;154259;154260;154261;154262;154263;154264;154265;154266;154267;154268;154269;154270;154271;154272;154273;154274;154275;154276;154277;154278;154279;154280;154281;154282 94951;94952;94953;94954;94955;94956;94957;94958;94959;94960;94961;94962;94963;94964;94965;94966;94967;94968;94969;94970 94957 20 GVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVDR Unmodified 3713.8537 0.85368328 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 2 3 2 2 2 47.709 46.684 3;4;5 6.0284E-44 17717 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 219.7 217.97 1893400000 100830000 96190000 70176000 0 0 0 63286000 79724000 90266000 0 0 0 93281000 70558000 81911000 333300000 305660000 264920000 72508000 70533000 100220000 0 0 0 8322 712 8113 154283;154284;154285;154286;154287;154288;154289;154290;154291;154292;154293;154294;154295;154296;154297;154298;154299;154300;154301;154302;154303;154304;154305;154306;154307;154308;154309;154310;154311;154312;154313;154314 94971;94972;94973;94974;94975;94976;94977;94978;94979;94980;94981;94982;94983;94984;94985;94986;94987;94988;94989;94990;94991;94992;94993 94973 23 GVSFQELPIDGNAAK Unmodified 1544.7835 0.78347187 704 P0AC62 grxC Glutaredoxin-3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 3 2 2 1 1 3 3 3 2 2 1 1 1 37.631 35.912 2;3 7.6232E-09 16635 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 150.33 143.47 4708000000 594490000 561620000 472540000 2399800 2468200 2009700 527010000 477410000 510690000 0 1885900 2169900 291490000 288690000 259570000 0 0 0 390830000 312800000 8234500 821690 0 860560 8323 704 8114 154315;154316;154317;154318;154319;154320;154321;154322;154323;154324;154325;154326;154327;154328;154329;154330;154331;154332;154333;154334;154335;154336;154337;154338;154339;154340;154341;154342;154343;154344;154345;154346;154347;154348;154349;154350;154351;154352;154353;154354 94994;94995;94996;94997;94998;94999;95000;95001;95002;95003;95004;95005;95006;95007 95005 13 GVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEK Unmodified 4225.9626 0.96259858 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 1 2 1 55.121 53.64 3;4 1.5062E-72 26569 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 252.18 251.93 1530900000 19872000 18012000 20735000 0 0 0 282690000 264320000 264100000 0 0 0 108970000 99779000 102720000 0 0 0 119190000 131200000 99302000 0 0 0 8324 654 8115 154355;154356;154357;154358;154359;154360;154361;154362;154363;154364;154365;154366;154367;154368;154369;154370;154371;154372;154373 95008;95009;95010;95011;95012;95013;95014;95015;95016;95017;95018 95011 11 GVSLEVSQEAR Unmodified 1173.599 0.59896556 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 20.323 20.611 2 1.221E-05 8054 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 144.77 131.96 166160000 29890000 27139000 25177000 0 0 0 13219000 13294000 0 5282700 6568200 5014300 8829700 8518500 6052400 0 0 0 5939400 2365900 5888100 2984800 0 0 8325 658 8116 154374;154375;154376;154377;154378;154379;154380;154381;154382;154383;154384;154385;154386;154387;154388;154389;154390;154391 95019;95020;95021;95022;95023;95024 95024 5 GVSTHNEDEAR Unmodified 1213.5323 0.53234256 735 P0ACK2 agaR Putative aga operon transcriptional repressor yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 5.5615 6.4334 2;3 0.00015967 1224 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 109.66 109.66 40368000 0 5660200 8756400 0 0 0 0 0 0 0 0 0 3787100 3361100 4275600 0 0 0 6025900 4509000 3992500 0 0 0 8326 735 8117 154392;154393;154394;154395;154396;154397;154398;154399 95025;95026;95027;95028;95029;95030 95026 6 GVSTIVSK Unmodified 789.45962 0.45961853 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.341 14.207 2 0.0029529 4356 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.19 70.74 904590000 99118000 108990000 77620000 0 0 0 90059000 93286000 75882000 0 0 0 50916000 61485000 54291000 0 0 0 64130000 67216000 61596000 0 0 0 8327 1375 8118 154400;154401;154402;154403;154404;154405;154406;154407;154408;154409;154410;154411 95031;95032;95033;95034;95035;95036;95037;95038;95039 95035 9 GVSTWHLNSPEEFTK Unmodified 1730.8264 0.82639932 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 30.834 29.36 2;3 1.5371E-45 13159 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 279.38 276.2 1579600000 0 7863200 7209600 0 0 0 177670000 31639000 170330000 11810000 3613100 13190000 185520000 140450000 141530000 3621600 4081200 4988100 218580000 231200000 220650000 2158800 1563400 1970000 8328 723 8119 154412;154413;154414;154415;154416;154417;154418;154419;154420;154421;154422;154423;154424;154425;154426;154427;154428;154429;154430;154431;154432;154433;154434;154435;154436;154437;154438;154439;154440;154441;154442 95040;95041;95042;95043;95044;95045;95046;95047;95048;95049;95050;95051;95052;95053;95054;95055;95056;95057;95058;95059;95060;95061 95058 22 GVSVSHR Unmodified 740.39294 0.39293595 1208 P23522 garL 5-keto-4-deoxy-D-glucarate aldolase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 5.1443 6.0798 2 0.0034949 1274 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.74 103.89 87920000 0 0 0 0 0 0 0 0 0 0 0 0 17926000 24854000 17086000 0 0 0 0 12478000 15577000 0 0 0 8329 1208 8120 154443;154444;154445;154446;154447 95062 95062 1 GVSVVVLPGDVALK Unmodified 1351.8075 0.80750177 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By matching 1 1 44.802 42.876 2 0.062973 21248 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 42.802 38.19 5996800 0 0 0 0 0 0 0 2460000 3536800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8330 147 8121 154448;154449 95063 95063 0 GVSVVVLPGDVALKPAPEGATMHWYHAPQPVVTPEEEELRK Unmodified 4432.2889 0.28894174 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 2 2 1 2 2 2 2 2 2 2 2 42.045 40.22 5;6 4.6125E-19 19580 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.01 121.91 2021500000 227080000 303990000 319420000 10710000 11223000 32315000 226640000 248350000 245690000 10990000 20413000 21547000 50215000 51009000 42187000 0 0 0 64066000 63304000 72380000 0 0 0 8331 147 8122 154450;154451;154452;154453;154454;154455;154456;154457;154458;154459;154460;154461;154462;154463;154464;154465;154466;154467;154468;154469;154470;154471;154472;154473;154474;154475;154476;154477;154478;154479;154480;154481;154482 95064;95065;95066;95067;95068;95069;95070;95071;95072;95073;95074;95075;95076;95077;95078;95079;95080;95081;95082 95079 18 GVSYDGLDR Unmodified 980.45632 0.45632407 1605 P52108 rstA Transcriptional regulatory protein RstA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.533 19.8 2 0.00077595 7633 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.54 85.91 242020000 12497000 14199000 13981000 0 0 0 19893000 19819000 18100000 3219200 2950700 3032800 22260000 22127000 0 0 0 0 31206000 27636000 28034000 1921600 0 1144500 8332 1605 8123 154483;154484;154485;154486;154487;154488;154489;154490;154491;154492;154493;154494;154495;154496;154497;154498 95083;95084;95085;95086;95087;95088 95085 6 GVTAIITMTESGR Unmodified 1334.6864 0.68640036 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 2 1 3 4 4 1 1 3 4 4 1 1 1 4 4 3 37.037 35.481 2;3 2.8505E-12 16092 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 225.67 204.21 2055200000 111160000 109080000 94230000 7766800 0 0 212360000 227990000 223900000 0 6914000 6402100 197610000 191530000 186270000 2494500 1887600 1635700 159790000 164050000 150170000 0 0 0 8333 1184 8124 154499;154500;154501;154502;154503;154504;154505;154506;154507;154508;154509;154510;154511;154512;154513;154514;154515;154516;154517;154518;154519;154520;154521;154522;154523;154524;154525;154526;154527;154528;154529;154530;154531;154532;154533;154534;154535;154536;154537;154538;154539;154540;154541;154542;154543;154544;154545 95089;95090;95091;95092;95093;95094;95095;95096;95097;95098;95099;95100;95101;95102;95103;95104;95105;95106;95107;95108;95109;95110;95111;95112;95113;95114;95115;95116;95117;95118 95110 22 GVTPVHFDSANDGVAAASEAVNLLR Unmodified 2509.2561 0.25611471 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 48.712 47.448 2;3 3.1101E-10 18939 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 119.34 111.05 7908500000 404820000 399750000 364630000 11750000 13726000 12993000 899180000 909880000 922220000 19497000 16938000 11485000 711760000 651560000 684310000 11793000 7783100 6524400 611500000 592710000 604850000 12642000 13920000 12313000 8334 1184 8125 154546;154547;154548;154549;154550;154551;154552;154553;154554;154555;154556;154557;154558;154559;154560;154561;154562;154563;154564;154565;154566;154567;154568;154569;154570;154571;154572;154573;154574;154575;154576;154577;154578;154579;154580;154581 95119;95120;95121;95122;95123;95124;95125;95126;95127;95128;95129;95130;95131;95132;95133;95134;95135;95136;95137;95138;95139 95121 20 GVTQEQAQR Unmodified 1015.5047 0.50467125 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 8.7916 9.641 2 4.5332E-08 2529 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 194.27 170.07 1194100000 215090000 198120000 206200000 0 724550 0 28207000 19648000 20149000 0 0 0 78735000 63385000 22250000 0 0 0 111620000 118130000 111850000 0 0 0 8335 1872 8126 154582;154583;154584;154585;154586;154587;154588;154589;154590;154591;154592;154593;154594 95140;95141;95142;95143;95144;95145;95146;95147;95148;95149;95150 95144 11 GVTVVNNFDAK Unmodified 1162.5982 0.59823728 476 P0A901 blc Outer membrane lipoprotein Blc yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 23.64 22.621 2 7.9009E-05 9919 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 123.86 107.98 67853000 0 0 0 1946500 2620500 2159600 15993000 14630000 12831000 5069000 3091200 2425100 0 0 0 0 0 0 6214900 0 0 0 0 872570 8336 476 8127 154595;154596;154597;154598;154599;154600;154601;154602;154603;154604;154605 95151;95152 95152 1 GVTYCPHCDGPLFK Unmodified 1649.733 0.73303298 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 25.952 24.783 2;3 5.2574E-35 10900 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 257.92 252.86 4475800000 274660000 211880000 206260000 0 0 1549000 513510000 552150000 473580000 5172800 2842800 4011700 336500000 346580000 338600000 0 0 0 391310000 442300000 371540000 0 1863200 1488400 8337 1437 8128 154606;154607;154608;154609;154610;154611;154612;154613;154614;154615;154616;154617;154618;154619;154620;154621;154622;154623;154624;154625;154626;154627;154628;154629;154630;154631;154632;154633;154634;154635 95153;95154;95155;95156;95157;95158;95159;95160;95161;95162;95163;95164;95165;95166;95167;95168;95169;95170;95171;95172;95173;95174;95175;95176 95171 24 GVTYSAPLR Unmodified 962.51853 0.5185304 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 2 2 1 2 2 1 1 1 1 1 1 3 3 3 1 1 1 2 1 2 20.206 20.431 2 7.4154E-06 5679 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 170.32 144.76 31515000000 379840000 297060000 271050000 33294000 23691000 24114000 277550000 264790000 280210000 1766100000 1683000000 1491800000 267730000 248760000 238590000 6129400000 4588800000 5085300000 373390000 345140000 349480000 2293800000 2399900000 2402500000 8338 463 8129 154636;154637;154638;154639;154640;154641;154642;154643;154644;154645;154646;154647;154648;154649;154650;154651;154652;154653;154654;154655;154656;154657;154658;154659;154660;154661;154662;154663;154664;154665;154666;154667;154668;154669;154670;154671;154672;154673;154674;154675;154676;154677;154678 95177;95178;95179;95180;95181;95182;95183;95184;95185;95186;95187;95188;95189;95190;95191;95192;95193;95194;95195;95196;95197;95198;95199;95200;95201;95202;95203;95204;95205;95206;95207 95186 28 GVVDTFR Unmodified 792.413 0.41300269 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 20.694 21.081 2 0.0006293 8333 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.06 108.14 381640000 101620000 97993000 88783000 0 0 0 8097700 6697100 7226800 0 0 0 10594000 7834600 0 0 0 0 19351000 16232000 17212000 0 0 0 8339 1112 8130 154679;154680;154681;154682;154683;154684;154685;154686;154687;154688;154689 95208;95209;95210 95208 3 GVVETPCFMPVGTYGTVK Unmodified 1940.9376 0.93760602 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 2 1 1 1 1 1 2 2 1 2 2 2 2 2 2 1 1 44.312 43.025 2;3 6.9505E-14 20127 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 150.69 148.71 222560000 8566500 12464000 9254600 0 0 0 10865000 8673600 8964900 2590400 2381800 1715500 10790000 11793000 2493000 36569000 19703000 19773000 18336000 17494000 15213000 2300600 0 2620400 8340 395 8131 154690;154691;154692;154693;154694;154695;154696;154697;154698;154699;154700;154701;154702;154703;154704;154705;154706;154707;154708;154709;154710;154711;154712;154713;154714;154715;154716;154717;154718 95211;95212;95213;95214;95215 95215 5 GVVETSLNVGVVTMTDNNVEIHCLIR Unmodified 2868.4474 0.44736265 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.06 48.665 3 9.2228E-41 23996 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 205.9 203.77 860550000 58290000 54746000 45285000 2532800 1585700 1356400 99120000 113600000 94988000 0 0 0 54726000 46346000 52504000 0 0 0 82083000 71638000 81754000 0 0 0 8341 1109 8132 154719;154720;154721;154722;154723;154724;154725;154726;154727;154728;154729;154730;154731;154732;154733 95216;95217;95218;95219;95220;95221;95222;95223;95224;95225;95226;95227 95218 12 GVVGLFPANR Unmodified 1028.5767 0.57671398 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.077 31.345 2 9.3975E-05 15191 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 131.04 116.88 119020000 0 0 0 3935900 3136800 0 13018000 12470000 11870000 7117100 7813200 8536300 0 0 0 0 0 1480100 0 21187000 16832000 3818200 4102400 3707500 8342 1083 8133 154734;154735;154736;154737;154738;154739;154740;154741;154742;154743;154744;154745;154746;154747 95228;95229;95230;95231;95232;95233;95234 95229 7 GVVHDTWPQALIAR Unmodified 1561.8365 0.83651049 1750 P69828 gatA Galactitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 34.187 32.643 2;3 1.3517E-19 14827 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 211.78 207.48 2969700000 247810000 235410000 220170000 11067000 9843600 11484000 339130000 360580000 329880000 13839000 13598000 10083000 189960000 181210000 196120000 3906300 3674600 5010300 188870000 189370000 198500000 2873900 3567500 3779000 8343 1750 8134 154748;154749;154750;154751;154752;154753;154754;154755;154756;154757;154758;154759;154760;154761;154762;154763;154764;154765;154766;154767;154768;154769;154770;154771;154772;154773;154774;154775;154776;154777;154778;154779;154780;154781;154782;154783;154784;154785;154786;154787;154788;154789 95235;95236;95237;95238;95239;95240;95241;95242;95243;95244;95245;95246;95247;95248;95249;95250;95251;95252;95253;95254;95255;95256;95257;95258;95259;95260;95261;95262;95263;95264;95265;95266;95267;95268 95268 32 GVVLWFTGLSGSGK Unmodified 1406.7558 0.75580056 251 P0A6J1 cysC Adenylyl-sulfate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.876 50.669 2 7.4535E-08 23618 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 173.64 162.48 389160000 25655000 27749000 20096000 1411800 1414200 1373700 35734000 26762000 26608000 3573600 3425900 3368100 24015000 18372000 21853000 2764600 1695800 0 46997000 43114000 46117000 2233600 2408700 2416200 8344 251 8135 154790;154791;154792;154793;154794;154795;154796;154797;154798;154799;154800;154801;154802;154803;154804;154805;154806;154807;154808;154809;154810;154811;154812;154813 95269;95270;95271;95272;95273;95274;95275;95276;95277;95278;95279;95280;95281;95282;95283 95283 13 GVVPQLVK Unmodified 838.52764 0.52763852 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 25.703 24.528 1;2 0.0033714 11317 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 92.692 82.508 6328100000 539560000 478650000 435620000 2157800 1946200 1575500 645620000 649690000 658530000 2267300 3123300 4038800 475450000 444500000 411370000 0 0 0 537290000 536720000 499950000 0 0 0 8345 771 8136 154814;154815;154816;154817;154818;154819;154820;154821;154822;154823;154824;154825;154826;154827;154828;154829;154830;154831;154832;154833;154834;154835;154836;154837;154838;154839;154840;154841;154842;154843 95284;95285;95286;95287;95288;95289;95290;95291;95292;95293;95294;95295;95296;95297;95298;95299;95300 95284 15 GVVVAIDK Unmodified 799.48035 0.48035398 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.338 19.802 2 0.0078415 7887 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 82.671 31.099 1890000000 216640000 196120000 184360000 1260100 1585100 1203000 144700000 123710000 136810000 0 0 0 134420000 123210000 101270000 0 0 0 182470000 167230000 168250000 1388100 0 5411300 8346 990 8137 154844;154845;154846;154847;154848;154849;154850;154851;154852;154853;154854;154855;154856;154857;154858;154859;154860 95301;95302;95303;95304;95305;95306;95307;95308;95309;95310;95311;95312 95301 12 GVVVAIDKDVVLVDAGLK Unmodified 1809.0612 0.061150279 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 44.824 43.358 2;3 4.5326E-24 21447 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 209.79 201.88 6580600000 539620000 520660000 531880000 34239000 33492000 32881000 525140000 498740000 456760000 95068000 85216000 70216000 460070000 361990000 355110000 108420000 85322000 77483000 501380000 561030000 472160000 65627000 57732000 50337000 8347 990 8138 154861;154862;154863;154864;154865;154866;154867;154868;154869;154870;154871;154872;154873;154874;154875;154876;154877;154878;154879;154880;154881;154882;154883;154884;154885;154886;154887;154888;154889;154890;154891;154892;154893;154894;154895;154896;154897;154898;154899;154900;154901;154902;154903;154904;154905;154906;154907;154908 95313;95314;95315;95316;95317;95318;95319;95320;95321;95322;95323;95324;95325;95326;95327;95328;95329;95330;95331;95332;95333;95334;95335;95336;95337;95338;95339;95340;95341;95342;95343;95344;95345;95346;95347;95348;95349;95350;95351;95352;95353;95354;95355;95356;95357;95358;95359;95360;95361;95362;95363;95364;95365;95366;95367;95368 95327 51 GVVVAIDKDVVLVDAGLKSESAIPAEQFK Unmodified 2996.6434 0.64340314 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 47.907 46.51 3;4 3.1612E-41 18583 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 208.58 203.67 530780000 0 0 0 35762000 44911000 52144000 0 0 0 68241000 60120000 63685000 0 0 0 23821000 17395000 15826000 0 0 0 49621000 43842000 55410000 8348 990 8139 154909;154910;154911;154912;154913;154914;154915;154916;154917;154918;154919;154920;154921;154922;154923;154924;154925;154926;154927;154928;154929 95369;95370;95371;95372;95373;95374;95375;95376;95377;95378;95379;95380;95381;95382;95383;95384;95385;95386;95387 95375 19 GVVVYLETTIEK Unmodified 1349.7442 0.74423282 233 P0A6D7 aroK Shikimate kinase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.287 39.442 2 1.8616E-05 19285 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.63 122.12 113440000 9227400 6067800 4496200 0 0 705050 13562000 10229000 9522100 1038000 1421900 0 7913400 8547900 8017400 0 0 0 12010000 9707800 9487000 766470 720290 0 8349 233 8140 154930;154931;154932;154933;154934;154935;154936;154937;154938;154939;154940;154941;154942;154943;154944;154945;154946 95388;95389;95390;95391;95392;95393;95394;95395;95396;95397;95398;95399 95391 9 GVWNVTK Unmodified 802.43374 0.43373813 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.792 20.135 2 0.078591 7297 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 57.811 40.25 500310000 37517000 39266000 26615000 0 0 0 48383000 44955000 40379000 812300 0 0 46378000 39867000 39696000 0 2340100 2228400 47327000 46238000 38310000 0 0 0 8350 1471 8141 154947;154948;154949;154950;154951;154952;154953;154954;154955;154956;154957;154958;154959;154960;154961 95400;95401 95401 2 GVYAQLHK Unmodified 914.4974 0.49740102 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.331 12.974 2 0.047248 3119 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 60.358 44.191 95076000 5416900 0 4399500 2159900 1371300 0 5817100 7856700 8291700 3359200 3351600 3749400 8590000 0 0 0 0 0 12496000 10890000 9660700 2817100 3698200 1150400 8351 1631 8142 154962;154963;154964;154965;154966;154967;154968;154969;154970;154971;154972;154973;154974;154975;154976;154977;154978 95402 95402 1 GVYHLYKDETYLYQSGK Unmodified 2063 6.5851E-06 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 1 1 2 2 2 24.951 23.927 3;4 4.1555E-14 10523 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.96 125.02 268800000 15048000 16955000 14105000 0 0 0 29784000 31500000 25315000 0 0 0 10554000 8348100 8505700 0 0 0 41780000 32723000 34180000 0 0 0 8352 346 8143 154979;154980;154981;154982;154983;154984;154985;154986;154987;154988;154989;154990;154991;154992;154993;154994;154995;154996;154997;154998 95403;95404;95405;95406 95405 4 GVYNTYIEDNLR Unmodified 1455.6994 0.69940789 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.55 32.94 2 7.974E-12 15982 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 190.88 178.67 2154700000 280460000 285280000 234870000 2749100 4117500 2793700 156970000 130620000 138390000 4934900 5971600 4142600 155790000 151980000 131360000 0 0 1228000 151420000 143250000 158510000 3485300 2448200 3891300 8353 696;1097 8144 154999;155000;155001;155002;155003;155004;155005;155006;155007;155008;155009;155010;155011;155012;155013;155014;155015;155016;155017;155018;155019;155020 95407;95408;95409;95410;95411;95412;95413;95414;95415;95416;95417;95418;95419;95420;95421;95422;95423;95424;95425;95426;95427 95412 20 GWEGVHWLDSEKPEQAR Unmodified 2022.9548 0.95478773 1118 P16384 miaA tRNA dimethylallyltransferase yes yes 0 0 1 By matching By MS/MS 1 1 30.314 28.538 3 0.16053 13538 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 16.678 10.555 20268000 0 0 0 0 0 0 0 9926800 10342000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8354 1118 8145 155021;155022 95428 95428 1 GWLLNEPNYR Unmodified 1260.6251 0.62512073 209 P09169 ompT Protease 7 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 36.835 35.333 2 0.065247 12458 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 50.878 50.164 45160000 0 8016800 6822200 2422100 0 0 0 0 0 0 0 0 12705000 0 15193000 0 0 0 0 0 0 0 0 0 8355 209 8146 155023;155024;155025;155026;155027 95429 95429 0 GWLPLFDFAYQGFAR Unmodified 1786.8831 0.88312633 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 2 1 1 2 1 55.818 54.363 2;3 1.5755E-11 25778 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 210.27 201.54 1013700000 4694400 122020000 157850000 0 0 0 2971600 9352000 12873000 0 0 0 126290000 152770000 92916000 0 0 0 60343000 155800000 115830000 0 0 0 8356 31 8147 155028;155029;155030;155031;155032;155033;155034;155035;155036;155037;155038;155039;155040;155041;155042;155043 95430;95431;95432;95433;95434;95435;95436;95437;95438 95438 9 GWQVPAFTLGGEATDIVVMR Oxidation (M) 2162.083 0.083024708 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 1 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 54.223 52.711 2 3.2781E-10 26187 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.73 124.58 74446000 4560800 2529600 5307500 0 0 0 25167000 19756000 17125000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8357 1755;1756 8148 155044;155045;155046;155047;155048;155049 95439;95440 95439 608 2 GWQVPAFTLGGEATDIVVMR Unmodified 2146.0881 0.088110086 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 54.765 53.3 2;3 2.4717E-23 26169 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 185.85 173.58 6382400000 528090000 484730000 488420000 0 0 0 1715000000 1399000000 1374200000 9060300 6370600 10739000 64362000 55371000 51115000 0 0 0 69095000 65040000 61778000 0 0 0 8358 1755;1756 8148 155050;155051;155052;155053;155054;155055;155056;155057;155058;155059;155060;155061;155062;155063;155064;155065;155066;155067;155068;155069;155070;155071;155072;155073;155074;155075;155076;155077;155078 95441;95442;95443;95444;95445;95446;95447;95448;95449;95450;95451;95452;95453;95454;95455;95456;95457;95458 95455 18 GWQVTGSK Unmodified 861.43447 0.43446642 764 P0AD12 yeeZ Protein YeeZ yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.93 15.716 1 0.0023252 5255 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.47 111.06 68982000 9199500 9256200 7965900 0 0 0 7094700 7122700 7643100 0 0 0 3987000 4311200 3926400 0 0 0 0 3977700 4497500 0 0 0 8359 764 8149 155079;155080;155081;155082;155083;155084;155085;155086;155087;155088;155089 95459;95460;95461 95461 0 GWQVVKPGTVATDTVVNTGAEGGPDAENGDTGQFVR Unmodified 3628.7394 0.73938181 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 2 2 1 2 1 38.676 37.17 3;4 2.6463E-22 17338 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 141.46 137.76 197470000 14705000 4975300 12269000 0 0 0 0 0 0 0 0 0 41167000 47339000 46219000 0 0 0 7262400 13865000 9667400 0 0 0 8360 1513 8150 155090;155091;155092;155093;155094;155095;155096;155097;155098;155099;155100;155101;155102;155103 95462;95463;95464;95465 95463 4 GWSEAYGLFLK Unmodified 1269.6394 0.63937381 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.276 47.832 2 0.00070965 23580 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 101.64 96.441 129820000 0 0 0 0 0 0 17180000 17974000 18213000 0 0 0 0 0 0 0 0 0 26644000 24696000 25113000 0 0 0 8361 1371 8151 155104;155105;155106;155107;155108;155109;155110 95466;95467;95468;95469;95470;95471 95467 6 GWTPVSESR Unmodified 1017.488 0.48795855 1162 P19931 hyaE Hydrogenase-1 operon protein HyaE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 19.62 20 2 0.0031097 8038 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 82.75 27.974 81324000 25212000 0 21861000 0 0 0 11169000 0 10381000 0 0 0 3545200 2533400 0 2321500 0 0 0 3999800 0 0 301460 0 8362 1162 8152 155111;155112;155113;155114;155115;155116;155117;155118;155119 95472;95473 95472 1 GWVQQYHIGALR Unmodified 1426.747 0.7469672 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.315 29.959 3 1.382E-05 14519 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.616 93.037 148840000 21664000 14522000 19894000 0 0 0 18858000 13596000 18111000 0 0 0 7782700 10656000 8713100 0 0 0 4001700 4366200 6671100 0 0 0 8363 427 8153 155120;155121;155122;155123;155124;155125;155126;155127;155128;155129;155130;155131 95474;95475;95476;95477;95478;95479;95480;95481 95474 7 GYACGLLLENGGNLR Unmodified 1605.7933 0.79332505 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.129 36.254 2 2.2771E-08 17432 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 176.48 164.75 227430000 12304000 12746000 11158000 0 0 0 28218000 25576000 26853000 3557100 3052500 4443400 15189000 15866000 13503000 0 0 0 16722000 17500000 19381000 1358500 0 0 8364 1916 8154 155132;155133;155134;155135;155136;155137;155138;155139;155140;155141;155142;155143;155144;155145;155146;155147 95482;95483;95484;95485;95486;95487;95488;95489;95490;95491 95488 10 GYAGAPGIHSPEQIAAWK Unmodified 1851.9268 0.92678206 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.426 30.07 2;3 5.7244E-17 14298 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 188.09 182.92 1242900000 47267000 45167000 34424000 0 0 0 145760000 142150000 147330000 0 0 0 102170000 110790000 96561000 0 0 0 122690000 126020000 122580000 0 0 0 8365 1890 8155 155148;155149;155150;155151;155152;155153;155154;155155;155156;155157;155158;155159;155160;155161;155162;155163;155164;155165;155166;155167;155168;155169;155170;155171 95492;95493;95494;95495;95496;95497;95498;95499;95500;95501;95502;95503;95504;95505;95506;95507;95508;95509;95510;95511;95512 95497 21 GYAGDITR Unmodified 851.41373 0.41373097 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 29.1 27.772 2 0.026201 12407 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 64.803 7.3398 77715000 0 0 0 0 0 0 5620400 5657200 6032600 0 0 0 6761700 8439300 7425400 0 0 0 15993000 12341000 9444200 0 0 0 8366 1100 8156 155172;155173;155174;155175;155176;155177;155178;155179;155180 95513;95514;95515;95516;95517;95518 95517 6 GYAGDTATTSEIK Unmodified 1312.6147 0.61467521 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 15.52 16.227 2;3 9.6875E-09 5574 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 161.17 160.67 10720000000 2545700000 2459300000 2186100000 2839400 3501500 2876700 585830000 623310000 503340000 1451500 1736600 2404100 209430000 186110000 179960000 0 0 0 413650000 403790000 408230000 0 0 0 8367 943 8157 155181;155182;155183;155184;155185;155186;155187;155188;155189;155190;155191;155192;155193;155194;155195;155196;155197;155198;155199;155200;155201;155202 95519;95520;95521;95522;95523;95524;95525;95526;95527;95528;95529;95530;95531;95532;95533;95534;95535 95520 17 GYAGTLASGR Unmodified 951.47739 0.47739386 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 14.183 15.041 2 0.00042297 4960 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.06 90.549 192350000 51679000 49704000 44725000 2428600 2615600 1875400 0 0 0 0 0 0 39320000 0 0 0 0 0 0 0 0 0 0 0 8368 1218 8158 155203;155204;155205;155206;155207;155208;155209 95536;95537 95537 1 GYAQKDPK Unmodified 905.46068 0.46068117 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 1 1 10.313 10.436 2 0.002451 1951 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 109.01 94.599 141440000 0 0 0 0 0 0 0 0 0 15883000 16147000 14060000 0 0 0 22716000 21499000 16567000 0 0 0 11321000 11666000 11584000 8369 1057 8159 155210;155211;155212;155213;155214;155215;155216;155217;155218;155219 95538;95539;95540;95541;95542;95543;95544;95545 95540 8 GYARFNIDSTQVSLTPDK Unmodified 2011.0011 0.0010692176 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.73 14.306 3 0.1599 3243 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 16.88 12.911 169700000 6880900 8381200 6325300 6373100 5194300 5280600 0 0 0 11971000 8671300 8775800 12730000 15133000 11739000 4866600 3618000 3691700 7379800 7275800 8715200 10053000 5457100 11184000 8370 486 8160 155220;155221;155222;155223;155224;155225;155226;155227;155228;155229;155230;155231;155232;155233;155234;155235;155236;155237;155238;155239;155240 95546;95547;95548 95546 3 GYASLDYNFK Unmodified 1176.5451 0.54513908 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.89 30.558 2 0.00011763 10199 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 153.71 151.29 374880000 60276000 0 0 1646600 0 0 43923000 0 0 4601900 4052600 0 0 25295000 31840000 22591000 16903000 24253000 44653000 52641000 0 15823000 12700000 13686000 8371 1633 8161 155241;155242;155243;155244;155245;155246;155247;155248;155249;155250;155251;155252;155253;155254;155255 95549;95550;95551;95552;95553;95554;95555;95556;95557;95558;95559;95560 95551 10 GYASLDYNFKR Unmodified 1332.6463 0.64625011 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 3 2 3 1 1 1 24.274 23.692 2;3 1.0952E-10 7556 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 198.54 194.97 151160000 0 0 0 0 0 0 0 0 0 4006300 3531900 3313400 0 0 0 35746000 24552000 24417000 0 0 0 20244000 17346000 18001000 8372 1633 8162 155256;155257;155258;155259;155260;155261;155262;155263;155264;155265;155266;155267;155268;155269 95561;95562;95563;95564;95565;95566;95567 95562 6 GYAWLDTGTHQSLIEASNFIATIEER Unmodified 2921.4196 0.41955122 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.706 53.258 3 1.1233E-41 26018 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 223.41 221.83 807290000 44740000 41789000 35606000 0 0 0 53119000 59894000 54031000 0 0 0 65806000 75314000 70851000 0 0 0 108960000 103440000 93747000 0 0 0 8373 1489 8163 155270;155271;155272;155273;155274;155275;155276;155277;155278;155279;155280;155281 95568;95569;95570;95571;95572;95573;95574;95575;95576;95577 95573 10 GYCADAASGQLDLNNPLIK Unmodified 2018.9731 0.97313991 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 42.188 40.49 2;3 2.5451E-22 19659 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 241.15 234.45 287330000 38054000 34805000 33395000 0 0 0 26505000 23710000 24609000 0 0 0 21386000 17449000 17033000 0 0 0 16490000 18332000 15558000 0 0 0 8374 1508 8164 155282;155283;155284;155285;155286;155287;155288;155289;155290;155291;155292;155293;155294;155295;155296;155297;155298;155299;155300;155301;155302;155303;155304;155305 95578;95579;95580;95581;95582;95583;95584;95585;95586 95583 9 GYCPLGR Unmodified 821.38541 0.38540773 1930 P77713 yagH Putative beta-xylosidase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 16.238 17.021 2 0.043235 5812 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 64.276 60.423 29003000 0 12103000 12862000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4037600 0 0 0 0 8375 1930 8165 155306;155307;155308 95587 95587 1 GYDDEDILK Unmodified 1066.4819 0.48187012 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.526 25.445 2 0.0008931 9251 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 98.523 88.055 1039500000 68741000 57571000 48333000 21992000 19020000 22896000 40890000 38049000 34464000 88672000 60771000 78365000 41312000 35587000 35496000 30333000 20748000 21360000 52409000 58603000 57913000 35125000 30093000 40806000 8376 144 8166 155309;155310;155311;155312;155313;155314;155315;155316;155317;155318;155319;155320;155321;155322;155323;155324;155325;155326;155327;155328;155329;155330;155331;155332 95588;95589;95590;95591;95592;95593;95594 95592 7 GYDGPIVECEK Unmodified 1265.5598 0.55980286 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 20.419 20.68 2 0.00012111 8350 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 115.82 108.45 838430000 58457000 60942000 45740000 0 0 0 67204000 66995000 76916000 0 0 1202400 80447000 72738000 69820000 2958700 1642300 1746900 78235000 78679000 71134000 0 1706400 1863300 8377 124 8167 155333;155334;155335;155336;155337;155338;155339;155340;155341;155342;155343;155344;155345;155346;155347;155348;155349;155350;155351;155352 95595;95596;95597;95598;95599;95600;95601;95602;95603;95604;95605;95606;95607;95608 95599 14 GYDHAFLLQAK Unmodified 1261.6455 0.64552182 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 26.499 25.452 2;3 9.083E-06 11712 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 148.14 137.34 824620000 118990000 95467000 83435000 0 0 0 64116000 76266000 72944000 0 0 0 45365000 40522000 41897000 0 0 0 58046000 60119000 67452000 0 0 0 8378 507 8168 155353;155354;155355;155356;155357;155358;155359;155360;155361;155362;155363;155364;155365;155366;155367;155368;155369;155370;155371;155372;155373;155374;155375;155376 95609;95610;95611;95612;95613;95614;95615;95616;95617;95618;95619;95620;95621;95622;95623;95624;95625;95626;95627 95614 19 GYDHLELNGK Unmodified 1144.5513 0.55128709 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 16.66 17.342 2;3 0.00027672 6184 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.2 109.29 450000000 31493000 31716000 29012000 0 0 0 39086000 41735000 41757000 2192800 835090 0 33697000 33166000 27686000 0 0 0 44881000 47865000 44880000 0 0 0 8379 59 8169 155377;155378;155379;155380;155381;155382;155383;155384;155385;155386;155387;155388;155389;155390;155391;155392;155393;155394;155395;155396;155397;155398;155399;155400;155401;155402 95628;95629;95630;95631;95632;95633;95634;95635;95636;95637;95638;95639;95640;95641;95642 95634 13 GYDILDLAK Unmodified 1006.5335 0.53351176 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 2 1 1 1 1 1 42.749 41.072 2 0.00023305 20214 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 123.69 85.556 404900000 128230000 130720000 131660000 899990 1098800 690580 5998800 5600500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8380 1374 8170 155403;155404;155405;155406;155407;155408;155409;155410;155411 95643;95644;95645 95643 3 GYDQVTR Unmodified 837.39808 0.39808091 493 P0A964 cheW Chemotaxis protein CheW yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 11.74 12.606 2 0.00080871 2537 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 144.29 110.94 208640000 59468000 64099000 50673000 10113000 10078000 9162100 5046200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8381 493 8171 155412;155413;155414;155415;155416;155417;155418 95646;95647;95648 95648 3 GYDSAGLAVVDAEGHMTR Unmodified 1847.8472 0.84721111 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 1 2 2 2 31.534 30.256 2;3 1.5196E-36 14504 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 292.8 284.29 4301200000 354120000 340380000 303550000 1520100 1423800 1394000 390880000 369700000 410360000 0 0 0 280320000 295640000 327710000 1282800 767580 0 431620000 398010000 392560000 0 0 0 8382 1137 8172 155419;155420;155421;155422;155423;155424;155425;155426;155427;155428;155429;155430;155431;155432;155433;155434;155435;155436;155437;155438;155439;155440;155441;155442;155443;155444;155445;155446;155447 95649;95650;95651;95652;95653;95654;95655;95656;95657;95658;95659;95660;95661;95662;95663;95664;95665;95666;95667;95668;95669;95670;95671 95651 23 GYDYPDIQR Unmodified 1125.5091 0.50908792 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 23.912 22.952 2 1.0524E-05 9607 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 166.05 166.05 5021500000 81027000 70749000 64501000 1195100 1042300 991160 863190000 762950000 750470000 2063900 2083100 1642800 353260000 383110000 390700000 0 0 0 393130000 393110000 506260000 0 0 0 8383 654 8173 155448;155449;155450;155451;155452;155453;155454;155455;155456;155457;155458;155459;155460;155461;155462;155463;155464;155465;155466 95672;95673;95674;95675;95676;95677;95678;95679;95680;95681;95682 95680 11 GYEFINDIK Unmodified 1097.5393 0.53932542 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.482 33.008 2 9.9943E-05 16117 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 136.16 131.42 18325000000 1839800000 1706000000 1617600000 12988000 16190000 14098000 1210300000 1137400000 1131400000 18571000 15723000 13807000 1364700000 1273900000 1290400000 10386000 7626500 9586900 1800100000 1846300000 1953300000 11249000 9590700 13545000 8384 264 8174 155467;155468;155469;155470;155471;155472;155473;155474;155475;155476;155477;155478;155479;155480;155481;155482;155483;155484;155485;155486;155487;155488;155489;155490 95683;95684;95685;95686;95687;95688;95689;95690;95691;95692;95693;95694;95695;95696;95697;95698;95699;95700;95701;95702 95685 20 GYEIHISDEALK Unmodified 1373.6827 0.68269519 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 1 2 2 2 1 27.999 26.724 2;3 1.4966E-30 12427 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 250.76 225.2 2159600000 256480000 237970000 218330000 3487500 3145700 3647000 232510000 271960000 246190000 2271700 10675000 1961400 103240000 98077000 103890000 0 0 754900 113820000 116400000 133470000 0 1335900 0 8385 1662 8175 155491;155492;155493;155494;155495;155496;155497;155498;155499;155500;155501;155502;155503;155504;155505;155506;155507;155508;155509;155510;155511;155512;155513;155514;155515;155516;155517;155518;155519;155520;155521;155522;155523;155524;155525;155526 95703;95704;95705;95706;95707;95708;95709;95710;95711;95712;95713;95714;95715;95716;95717;95718;95719;95720;95721;95722;95723;95724;95725;95726;95727;95728;95729;95730;95731 95710 29 GYELEESFPADR Unmodified 1411.6256 0.62557424 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.78 31.255 2 4.0644E-09 14808 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 178.22 166.73 457670000 29341000 26324000 27464000 0 0 0 27573000 25859000 22577000 0 0 2756800 31856000 30528000 28465000 0 0 0 42027000 36689000 34916000 33575000 29522000 28202000 8386 1433 8176 155527;155528;155529;155530;155531;155532;155533;155534;155535;155536;155537;155538;155539;155540;155541;155542 95732;95733;95734;95735;95736;95737;95738;95739;95740;95741;95742;95743;95744;95745;95746;95747 95739 15 GYELHYMEMGDLYLINGEAR Unmodified 2373.077 0.076953052 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 49.377 48.099 3 0.063898 23421 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 38.878 31.684 16804000 4705800 0 0 0 0 0 0 0 0 0 0 0 4146300 0 0 0 0 0 4747600 0 3204600 0 0 0 8387 90 8177 155543;155544;155545;155546 95748 95748 0 GYEPAEKDPITFHAVPK Unmodified 1897.9574 0.95741349 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 23.399 22.55 3;4 0.010527 7176 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 43.408 39.504 695250000 55714000 54657000 46475000 11405000 10028000 8923700 50430000 44673000 29524000 26651000 20070000 22018000 38627000 35752000 32346000 0 0 0 52888000 60101000 55177000 11378000 13730000 14678000 8388 1909 8178 155547;155548;155549;155550;155551;155552;155553;155554;155555;155556;155557;155558;155559;155560;155561;155562;155563;155564;155565;155566;155567;155568;155569;155570;155571;155572;155573;155574;155575;155576;155577;155578;155579;155580;155581;155582;155583;155584;155585;155586;155587 95749;95750;95751;95752;95753;95754;95755;95756;95757;95758;95759;95760;95761;95762;95763;95764;95765;95766;95767;95768 95761 20 GYEVGGTVR Unmodified 936.46649 0.46649483 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 14.705 15.302 2 5.653E-05 4976 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 147.34 133.66 1967600000 147470000 140660000 156590000 4511000 4128200 4465900 102110000 110810000 98596000 7018700 4624200 5201300 129600000 139870000 138150000 0 1680500 0 268010000 223680000 239360000 13424000 14333000 13341000 8389 937 8179 155588;155589;155590;155591;155592;155593;155594;155595;155596;155597;155598;155599;155600;155601;155602;155603;155604;155605;155606;155607;155608;155609;155610;155611 95769;95770;95771;95772;95773;95774;95775;95776;95777;95778;95779;95780;95781;95782;95783;95784;95785;95786;95787 95778 19 GYEVIVEQQIAHELQLK Unmodified 1996.0629 0.062941193 327 P0A7B3 nadK NAD kinase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 50.346 48.89 3 7.9459E-09 23053 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 115.5 112.76 106690000 0 0 11714000 0 0 0 12133000 10808000 8942600 884280 0 0 9826000 8703800 10209000 0 0 0 11385000 11192000 10888000 0 0 0 8390 327 8180 155612;155613;155614;155615;155616;155617;155618;155619;155620;155621;155622 95788;95789;95790;95791;95792;95793 95791 6 GYFPTDGSR Unmodified 998.44576 0.44575938 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 21.153 21.137 2 0.0057806 6916 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 73.26 73.26 47642000 0 0 0 0 0 0 0 0 0 0 4189600 3563900 0 0 0 0 1703100 0 13205000 10757000 7391600 4438900 0 2393400 8391 486 8181 155623;155624;155625;155626;155627;155628;155629;155630;155631 95794;95795;95796;95797;95798 95796 4 GYFVFHDAYGYFEK Unmodified 1741.7777 0.77765821 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.647 40.948 2;3 7.3836E-11 20070 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 164.9 158.67 417960000 21769000 19616000 16241000 0 0 0 38480000 31685000 33241000 0 0 0 37948000 36078000 33967000 0 0 0 51561000 50450000 46928000 0 0 0 8392 1509 8182 155632;155633;155634;155635;155636;155637;155638;155639;155640;155641;155642;155643;155644;155645;155646;155647;155648;155649;155650;155651;155652;155653;155654;155655 95799;95800;95801;95802;95803;95804;95805;95806;95807 95802 6 GYGGWVLTMR Unmodified 1138.5593 0.55934935 767 P0AD42 pgpC Phosphatidylglycerophosphatase C yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.78 39.896 2 0.0026983 19758 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 88.948 81.008 45362000 0 0 0 460190 720740 525770 4829100 4611400 3973200 1616100 2160500 0 3168200 3710700 2925100 0 0 0 6232400 5020200 5408700 0 0 0 8393 767 8183 155656;155657;155658;155659;155660;155661;155662;155663;155664;155665;155666;155667;155668;155669 95808;95809;95810 95810 3 GYGLQMR Unmodified 823.40106 0.4010578 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.586 20.076 2 0.0020458 7942 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.23 95.438 1363400000 128450000 120800000 129760000 0 0 0 152190000 148980000 136050000 0 0 0 93590000 85613000 80630000 0 0 0 90780000 90703000 105820000 0 0 0 8394 468 8184 155670;155671;155672;155673;155674;155675;155676;155677;155678;155679;155680;155681 95811;95812;95813;95814;95815;95816;95817;95818;95819 95812 8 GYGMGDAAEGK Unmodified 1054.439 0.43895945 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.051 14.649 2 9.861E-05 3898 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 120.12 120.12 25715000000 570620000 612120000 498220000 3038200000 3108800000 3473200000 846500000 815850000 767770000 246890000 226880000 252730000 530240000 472160000 438160000 118220000 85503000 97912000 792520000 738870000 788990000 2440200000 2316900000 2437900000 8395 939 8185 155682;155683;155684;155685;155686;155687;155688;155689;155690;155691;155692;155693;155694;155695;155696;155697;155698;155699;155700;155701;155702;155703;155704;155705 95820;95821;95822;95823;95824;95825;95826;95827;95828;95829;95830;95831;95832;95833;95834;95835;95836;95837;95838;95839;95840;95841;95842;95843;95844 95823 23 GYGMGDAAEGK Oxidation (M) 1070.4339 0.43387407 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 4 4 4 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 3 2 2 12.298 12.935 2 0.00022836 2260 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 107.15 107.15 1001800000 19698000 19312000 21809000 104840000 131490000 120230000 39314000 34933000 37366000 11055000 9948300 2678500 8770200 9390100 8557900 1972900 1002600 1769200 29206000 26611000 34354000 116650000 101230000 109650000 8396 939 8185 155706;155707;155708;155709;155710;155711;155712;155713;155714;155715;155716;155717;155718;155719;155720;155721;155722;155723;155724;155725;155726;155727;155728;155729;155730;155731;155732;155733;155734;155735;155736;155737;155738;155739;155740;155741;155742;155743;155744;155745;155746 95845;95846;95847;95848;95849;95850;95851;95852;95853;95854;95855;95856;95857;95858;95859;95860;95861;95862;95863 95850 434 19 GYGNLIIIK Unmodified 989.59097 0.59096706 777 P0ADA3 nlpD Murein hydrolase activator NlpD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.331 34.579 2 0.0011499 16622 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.906 39.223 604180000 67510000 62314000 61546000 775220 926010 1179800 51559000 41337000 38076000 4645700 4607500 3762000 36414000 36621000 38303000 0 0 0 44682000 51273000 56003000 0 2645700 0 8397 777 8186 155747;155748;155749;155750;155751;155752;155753;155754;155755;155756;155757;155758;155759;155760;155761;155762;155763;155764;155765 95864;95865;95866;95867;95868;95869;95870;95871 95866 6 GYGTLADVPEK Unmodified 1148.5714 0.57135383 1786 P75874 yccU Uncharacterized protein YccU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.547 22.753 2 1.6613E-07 9707 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 133.13 115.89 483440000 0 0 0 0 0 0 89038000 84640000 86087000 0 0 0 38714000 35486000 40010000 0 0 0 27532000 40219000 41714000 0 0 0 8398 1786 8187 155766;155767;155768;155769;155770;155771;155772;155773;155774;155775;155776;155777 95872;95873;95874;95875;95876;95877;95878;95879;95880;95881;95882;95883 95879 12 GYGTLADVPEKVDMVDVFR Unmodified 2110.0405 0.040491191 1786 P75874 yccU Uncharacterized protein YccU yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.91 46.495 3 3.7001E-07 23004 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 105.38 103.88 671380000 82135000 79452000 71559000 0 0 0 79932000 70916000 65134000 0 0 0 33363000 39120000 34532000 0 0 0 37895000 35361000 41980000 0 0 0 8399 1786 8188 155778;155779;155780;155781;155782;155783;155784;155785;155786;155787;155788;155789 95884;95885;95886 95885 3 GYHKPIMLAGGIGNIR Unmodified 1695.9243 0.92427964 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 3 2 3 2 1 1 2 2 2 2 2 2 24.9 23.959 2;3;4 4.3512E-05 10630 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.729 78.674 487200000 146670000 85874000 83352000 0 0 0 16356000 13003000 13424000 0 0 0 20393000 18306000 14655000 0 0 0 28561000 21141000 25459000 0 0 0 8400 1107 8189 155790;155791;155792;155793;155794;155795;155796;155797;155798;155799;155800;155801;155802;155803;155804;155805;155806;155807;155808;155809;155810;155811;155812;155813 95887;95888;95889;95890;95891 95887 5 GYIEGLEMLASMR Unmodified 1468.7054 0.70542124 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 53.949 52.62 2 2.819E-06 25604 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 131.82 114.59 164180000 14512000 15640000 15413000 0 0 0 14339000 12077000 9141200 0 0 0 11363000 13746000 10109000 1410700 0 0 16575000 15804000 14050000 0 0 0 8401 491 8190 155814;155815;155816;155817;155818;155819;155820;155821;155822;155823;155824;155825;155826 95892;95893;95894;95895;95896;95897 95895 1 GYINSLGALTGGQALQQAK Unmodified 1889.0007 0.0006752871 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 2 2 2 41.173 39.512 2;3 4.6025E-37 18366 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 317.15 306.54 4663300000 1266000000 1291100000 1112300000 0 0 0 161020000 153190000 161180000 0 0 0 64020000 59814000 60711000 0 0 0 114730000 114040000 105200000 0 0 0 8402 517 8191 155827;155828;155829;155830;155831;155832;155833;155834;155835;155836;155837;155838;155839;155840;155841;155842;155843;155844;155845;155846;155847;155848;155849;155850;155851 95898;95899;95900;95901;95902;95903;95904;95905;95906;95907;95908;95909;95910;95911;95912;95913;95914;95915;95916;95917;95918 95917 21 GYISDNFGK Unmodified 999.46616 0.46616048 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.133 22.401 2 0.0046486 9176 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 77.282 70.643 643560000 43149000 41390000 45566000 0 0 0 50041000 51531000 52243000 0 0 0 55839000 52480000 49778000 0 0 0 61463000 70346000 64757000 0 2346300 2633900 8403 124 8192 155852;155853;155854;155855;155856;155857;155858;155859;155860;155861;155862;155863;155864;155865 95919;95920;95921;95922;95923;95924;95925;95926;95927;95928 95928 10 GYISDQLTDEAIGVVDR Unmodified 1849.9058 0.90577185 1897 P77318 ydeN Uncharacterized sulfatase YdeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 47.624 46.285 3 1.2115E-10 22741 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.61 133.37 46690000 16352000 16924000 13414000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8404 1897 8193 155866;155867;155868 95929;95930;95931 95929 3 GYIVVDK Unmodified 792.43815 0.43815481 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 1 1 2 2 18.385 18.999 1;2 0.0067527 7122 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.163 65.635 839370000 100030000 90862000 83746000 0 0 0 80403000 84273000 19536000 0 0 0 77665000 68153000 13330000 0 0 0 16920000 106820000 97635000 0 0 0 8405 128 8194 155869;155870;155871;155872;155873;155874;155875;155876;155877;155878;155879;155880;155881;155882;155883;155884;155885;155886;155887;155888;155889 95932;95933;95934;95935;95936;95937;95938;95939;95940 95936 8 GYLADVELSK Unmodified 1093.5655 0.56554017 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.944 29.55 2 0.00031558 10961 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 126.41 112.76 6370500000 225070000 194880000 185930000 42143000 35696000 37890000 484360000 449190000 471490000 110610000 155080000 134840000 497560000 478690000 535320000 37165000 36042000 39514000 593990000 611950000 620190000 129230000 131450000 132200000 8406 645 8195 155890;155891;155892;155893;155894;155895;155896;155897;155898;155899;155900;155901;155902;155903;155904;155905;155906;155907;155908;155909;155910;155911;155912;155913 95941;95942;95943;95944;95945;95946;95947;95948;95949;95950;95951;95952;95953 95946 13 GYLDYDAK Unmodified 943.42871 0.42871234 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 22.105 22.141 2 0.0031836 9344 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.262 91.959 1174600000 123800000 98690000 86685000 395860 0 0 110290000 102670000 90450000 0 0 0 94403000 84479000 88206000 0 0 0 96101000 96390000 102020000 0 0 0 8407 149 8196 155914;155915;155916;155917;155918;155919;155920;155921;155922;155923;155924;155925;155926 95954;95955;95956;95957;95958;95959;95960;95961;95962 95954 9 GYLFAPHAWE Unmodified 1189.5556 0.55564418 1605 P52108 rstA Transcriptional regulatory protein RstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.678 41.002 2 0.0082844 20005 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 65.252 65.252 206350000 19560000 18475000 14392000 0 0 0 18574000 13674000 17572000 0 0 0 23277000 20854000 14322000 0 0 0 0 21343000 24307000 0 0 0 8408 1605 8197 155927;155928;155929;155930;155931;155932;155933;155934;155935;155936;155937;155938 95963;95964;95965;95966;95967;95968;95969;95970 95965 6 GYLSPYFINKPETGAVELESPFILLADK Unmodified 3110.6216 0.62160507 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.606 53.158 3 2.4648E-11 26338 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.59 128.54 2734700000 341310000 293070000 287110000 0 0 0 178170000 171540000 147180000 0 0 0 191080000 158500000 181600000 0 0 0 260790000 280420000 243930000 0 0 0 8409 240 8198 155939;155940;155941;155942;155943;155944;155945;155946;155947;155948;155949;155950 95971;95972;95973;95974;95975;95976;95977;95978;95979;95980;95981 95972 11 GYLSPYFINKPETGAVELESPFILLADKK Unmodified 3238.7166 0.71656809 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 2 3 2 3 2 2 2 3 3 3 2 1 1 2 2 2 2 2 2 52.61 51.389 3;4 3.8513E-17 25547 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 156.27 156.2 7623600000 739010000 685380000 604920000 73633000 69252000 71586000 600730000 573220000 502700000 98483000 89663000 86454000 435440000 448360000 417400000 49490000 39103000 49661000 571530000 566280000 669820000 54007000 62770000 64661000 8410 240 8199 155951;155952;155953;155954;155955;155956;155957;155958;155959;155960;155961;155962;155963;155964;155965;155966;155967;155968;155969;155970;155971;155972;155973;155974;155975;155976;155977;155978;155979;155980;155981;155982;155983;155984;155985;155986;155987;155988;155989;155990;155991;155992;155993;155994;155995;155996;155997;155998;155999;156000;156001;156002;156003 95982;95983;95984;95985;95986;95987;95988;95989;95990;95991;95992;95993;95994;95995;95996;95997;95998;95999;96000;96001;96002;96003;96004;96005;96006;96007;96008;96009;96010;96011;96012;96013;96014;96015;96016;96017;96018;96019;96020;96021;96022;96023;96024 95992 42 GYLSQLLNAK Unmodified 1105.6132 0.61315906 1297 P27278 nadR Trifunctional NAD biosynthesis/regulator protein NadR;Transcriptional regulator NadR;Nicotinamide mononucleotide adenylyltransferase;Ribosylnicotinamide kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 39.514 37.766 2 0.0021208 18179 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.523 83.142 35377000 7000300 5893200 4981000 0 0 0 4454800 3758700 6728500 0 0 0 1057400 0 0 0 0 0 1503000 0 0 0 0 0 8411 1297 8200 156004;156005;156006;156007;156008;156009;156010;156011 96025 96025 1 GYMTDMK Unmodified 844.34591 0.34591068 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 15.584 16.369 2 0.021819 5569 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 75.311 75.311 76463000 16443000 15201000 16710000 0 0 0 5868800 6108800 4478900 0 0 0 1760700 0 2303200 0 0 0 2940000 2049800 2599500 0 0 0 8412 119 8201 156012;156013;156014;156015;156016;156017;156018;156019;156020;156021;156022 96026;96027 96027 2 GYNGLAEVGK Unmodified 1006.5084 0.50835964 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1 2 1 1 1 2 2 1 1 1 1 1 2 2 1 1 20.299 20.456 2 0.001 7207 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 87.308 79.376 2652300000 61181000 59785000 30955000 0 0 339560 252030000 243240000 249500000 9247000 6963400 7146400 218790000 205200000 187970000 16496000 12675000 12758000 344120000 383770000 337410000 6068600 6697000 0 8413 895 8202 156023;156024;156025;156026;156027;156028;156029;156030;156031;156032;156033;156034;156035;156036;156037;156038;156039;156040;156041;156042;156043;156044;156045;156046;156047;156048;156049;156050 96028;96029;96030;96031;96032;96033;96034;96035;96036;96037;96038;96039 96037 8 GYNGLAEVGKK Unmodified 1134.6033 0.60332266 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 13.576 14.447 2;3 0.00026901 4228 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 102.62 77.699 721130000 5905700 14388000 9305700 0 0 0 78023000 65811000 69236000 0 0 0 61761000 68578000 64716000 0 0 0 94063000 93783000 95560000 0 0 0 8414 895 8203 156051;156052;156053;156054;156055;156056;156057;156058;156059;156060;156061;156062;156063;156064;156065;156066;156067;156068;156069;156070;156071;156072;156073 96040;96041;96042;96043;96044;96045;96046;96047;96048;96049;96050;96051;96052;96053 96051 9 GYPINNPEDVAYSR Unmodified 1593.7423 0.74233534 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 29.09 27.74 2 5.0676E-11 12876 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.65 162.71 276720000 0 0 0 0 0 0 35913000 39105000 37199000 0 0 0 26562000 29839000 29021000 0 0 0 41001000 38081000 0 0 0 0 8415 1900 8204 156074;156075;156076;156077;156078;156079;156080;156081;156082;156083 96054;96055;96056;96057;96058;96059;96060;96061;96062;96063 96060 10 GYPNSQYTTDATK Unmodified 1444.647 0.64703797 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.189 15.993 2 5.1791E-07 5372 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.11 137.41 54683000 2953200 0 0 376850 468340 389210 4947000 5272400 2406400 0 1653100 0 3545600 3038900 3147700 0 0 0 7311900 8549400 10623000 0 0 0 8416 690 8205 156084;156085;156086;156087;156088;156089;156090;156091;156092;156093;156094;156095;156096;156097 96064;96065;96066;96067;96068 96065 5 GYPNSQYTTDATKR Unmodified 1600.7481 0.74814899 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 12.959 13.643 3 0.045165 3499 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 38.511 38.465 16139000 0 0 0 2342700 1862800 2052200 0 0 0 5710800 4170900 0 0 0 0 0 0 0 0 0 0 0 0 0 8417 690 8206 156098;156099;156100;156101;156102;156103;156104 96069;96070;96071;96072 96069 4 GYQEVITYSFVDPK Unmodified 1644.8035 0.80353861 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 2 1 2 1 1 1 43.479 41.992 2;3 2.4702E-06 20860 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.12 115.64 1557800000 141290000 120960000 111990000 0 0 0 102170000 112020000 92038000 0 0 0 144530000 112800000 139850000 0 0 0 168820000 164350000 146940000 0 0 0 8418 161 8207 156105;156106;156107;156108;156109;156110;156111;156112;156113;156114;156115;156116;156117;156118 96073;96074;96075;96076;96077;96078;96079;96080;96081 96073 8 GYQLILR Unmodified 861.50724 0.50723743 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 29.551 28.447 2 0.0016613 13232 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 126.05 95.305 261300000 91956000 94793000 69733000 0 0 0 0 0 0 0 0 0 2102200 2717200 0 0 0 0 0 0 0 0 0 0 8419 774 8208 156119;156120;156121;156122;156123 96082;96083;96084 96083 3 GYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVR Unmodified 3702.8676 0.86755921 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 2 1 2 3 3 3 1 3 2 3 53.066 51.686 3;4;5 5.4308E-116 25264 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 334.79 331.3 2798200000 0 0 0 0 0 0 203920000 207270000 200790000 3340700 0 3378800 397720000 409040000 371020000 0 0 3504500 338560000 311200000 348470000 0 0 0 8420 38 8209 156124;156125;156126;156127;156128;156129;156130;156131;156132;156133;156134;156135;156136;156137;156138;156139;156140;156141;156142;156143;156144;156145;156146;156147;156148;156149;156150;156151;156152 96085;96086;96087;96088;96089;96090;96091;96092;96093;96094;96095;96096;96097;96098;96099;96100;96101;96102;96103 96091 19 GYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPK Unmodified 4284.2001 0.20012674 38 P00634 phoA Alkaline phosphatase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 54.004 52.547 4 1.1265E-12 24740 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 92.883 89.314 164170000 0 0 0 0 0 0 25921000 28250000 29148000 0 0 0 18848000 21394000 22393000 0 0 0 9865300 0 8348700 0 0 0 8421 38 8210 156153;156154;156155;156156;156157;156158;156159;156160 96104 96104 1 GYRPQFYFR Unmodified 1232.6091 0.60907674 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 3 3 3 2 2 3 5 3 2 2 2 5 4 4 2 2 1 26.519 25.379 1;2;3 1.7719E-16 10694 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 246.18 229.08 58337000000 2776300000 2696700000 2562100000 134380000 138600000 129970000 5171600000 4755900000 5077700000 112470000 82396000 99609000 5739300000 5154400000 5372900000 72590000 56982000 64962000 6077100000 6143700000 5673800000 81264000 91439000 71088000 8422 1048 8211 156161;156162;156163;156164;156165;156166;156167;156168;156169;156170;156171;156172;156173;156174;156175;156176;156177;156178;156179;156180;156181;156182;156183;156184;156185;156186;156187;156188;156189;156190;156191;156192;156193;156194;156195;156196;156197;156198;156199;156200;156201;156202;156203;156204;156205;156206;156207;156208;156209;156210;156211;156212;156213;156214;156215;156216;156217;156218;156219;156220;156221;156222;156223 96105;96106;96107;96108;96109;96110;96111;96112;96113;96114;96115;96116;96117;96118;96119;96120;96121;96122;96123;96124;96125;96126;96127;96128;96129;96130;96131;96132;96133;96134;96135;96136;96137;96138;96139;96140;96141;96142;96143;96144;96145;96146;96147;96148;96149;96150;96151;96152;96153;96154;96155;96156;96157;96158;96159;96160;96161;96162;96163;96164;96165;96166;96167 96167 58 GYSLPEPIQLLNAK Unmodified 1541.8453 0.84534384 126 P06709 birA Bifunctional ligase/repressor BirA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 50.085 48.665 2 2.6835E-05 22838 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 112.75 112.75 76970000 11320000 2390500 7447700 0 0 0 6094300 7362900 3415000 0 0 0 0 6733500 8484700 0 0 0 10620000 9252800 3848600 0 0 0 8423 126 8212 156224;156225;156226;156227;156228;156229;156230;156231;156232;156233;156234 96168;96169 96168 2 GYSMPVLCNLFGTPK Unmodified 1682.816 0.81603433 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.004 51.588 2 1.0518E-05 21111 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 109.6 102.71 174170000 9837800 16678000 15806000 2684000 3253500 4461600 10810000 11502000 10739000 6483300 5742900 6905600 6852600 7884800 7122700 0 0 0 13821000 15754000 13120000 4714200 0 0 8424 582 8213 156235;156236;156237;156238;156239;156240;156241;156242;156243;156244;156245;156246;156247;156248;156249;156250;156251;156252;156253 96170;96171;96172 96170 3 GYSTLNSGPATR Unmodified 1222.5942 0.59421454 1317 P28305 pabC Aminodeoxychorismate lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.714 15.479 2 1.5001E-05 5175 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 126.31 118.16 79331000 5035800 11678000 11872000 0 0 0 7032400 8893100 6213100 0 0 0 5088800 3869900 3736100 0 0 0 4903300 6013500 4994600 0 0 0 8425 1317 8214 156254;156255;156256;156257;156258;156259;156260;156261;156262;156263;156264;156265 96173 96173 1 GYSVEYFVEGGR Unmodified 1361.6252 0.62518031 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 39.245 37.638 2 0.0001001 17507 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.309 78.302 171890000 0 0 0 2201300 2133200 2886500 0 0 0 0 0 0 22728000 21758000 21894000 0 0 0 35450000 28521000 34321000 0 0 0 8426 324 8215 156266;156267;156268;156269;156270;156271;156272;156273;156274 96174;96175;96176;96177;96178 96177 5 GYTAASIR Unmodified 837.43447 0.43446642 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 14.123 14.898 2 5.0376E-12 4417 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 178.84 116.13 434090000 76604000 79769000 62308000 0 0 0 2794200 0 103150000 0 0 0 0 0 0 0 0 0 0 0 109470000 0 0 0 8427 63 8216 156275;156276;156277;156278;156279;156280;156281 96179;96180;96181;96182;96183 96183 5 GYTFVSETDTEVIAHLVNWELK Unmodified 2550.2642 0.26421978 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.791 53.348 3 3.9225E-15 26212 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 139.02 134.6 1626400000 99672000 134470000 0 2403900 0 0 186600000 174170000 159830000 0 0 0 117320000 121920000 127020000 0 0 0 184050000 178970000 139950000 0 0 0 8428 1137 8217 156282;156283;156284;156285;156286;156287;156288;156289;156290;156291;156292;156293 96184 96184 1 GYTLGNVDVTIIAQAPK Unmodified 1758.9516 0.95159983 1648 P62617 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 46.716 45.299 2 2.4957E-05 21086 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 105.32 97.958 53934000 0 4583300 0 0 0 0 4911900 5743500 5685600 0 0 0 5122400 4018800 4413700 0 0 0 7098500 6433700 5923100 0 0 0 8429 1648 8218 156294;156295;156296;156297;156298;156299;156300;156301;156302;156303 96185;96186 96186 1 GYTLILGNAWNNLEK Unmodified 1704.8835 0.88352026 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.156 48.75 2 2.5067E-11 23960 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 161.19 142.44 347640000 42499000 41515000 39050000 0 0 0 23898000 21858000 21210000 0 0 0 24259000 23332000 23756000 0 0 0 28015000 29920000 28326000 0 0 0 8430 740 8219 156304;156305;156306;156307;156308;156309;156310;156311;156312;156313;156314;156315 96187;96188 96187 2 GYTLNGR Unmodified 779.3926 0.3926016 211 P09372 grpE Protein GrpE yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 13.362 14.068 2 0.0022382 3717 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 115.83 94.965 75264000 0 0 0 5119900 3675200 2726300 0 0 0 23156000 16300000 0 0 0 24286000 0 0 0 0 0 0 0 0 0 8431 211 8220 156316;156317;156318;156319;156320;156321 96189;96190;96191 96189 2 GYTSLVVVPVGHHSVEDFNATLPK Unmodified 2565.3227 0.32273771 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 3 3 3 3 3 3 39.238 37.562 2;3;4 5.9848E-10 18544 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 113.54 110.7 4349900000 337820000 400630000 336290000 839470 1618600 0 406030000 399540000 373950000 0 0 0 268420000 264640000 243650000 0 0 0 436010000 452740000 427700000 0 0 0 8432 1505 8221 156322;156323;156324;156325;156326;156327;156328;156329;156330;156331;156332;156333;156334;156335;156336;156337;156338;156339;156340;156341;156342;156343;156344;156345;156346;156347;156348;156349;156350;156351;156352;156353;156354;156355;156356;156357;156358;156359 96192;96193;96194;96195;96196;96197;96198;96199;96200;96201;96202;96203;96204;96205;96206;96207;96208;96209;96210;96211;96212;96213;96214;96215;96216 96196 25 GYTVSIFNR Unmodified 1055.54 0.53999412 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.647 32.074 2 1.2194E-06 14643 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 203.49 199.47 10525000000 647370000 516720000 486290000 2123400 1813400 2269600 1012500000 1002600000 1000100000 2270700 2142000 0 923430000 818230000 758670000 2543200 0 0 1043600000 1120300000 1174600000 3186700 2305900 2124800 8433 24 8222 156360;156361;156362;156363;156364;156365;156366;156367;156368;156369;156370;156371;156372;156373;156374;156375;156376;156377;156378;156379;156380 96217;96218;96219;96220;96221;96222;96223;96224;96225;96226;96227;96228;96229 96227 11 GYTYLLSR Unmodified 971.50763 0.50763136 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 28.949 27.892 2 0.00012698 12427 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 130.77 79.8 107950000 0 0 107950000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8434 404 8223 156381;156382;156383;156384 96230;96231;96232;96233 96232 4 GYVLTNNHVINQAQK Unmodified 1697.8849 0.88491725 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 18.644 19.15 2;3 2.1737E-45 7479 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 300.35 294.88 506800000 13905000 18509000 14590000 4247200 3748700 3971400 65694000 68410000 68116000 2497100 1802200 1908700 46424000 35645000 35847000 0 0 0 41471000 34493000 44470000 0 1047500 0 8435 1507 8224 156385;156386;156387;156388;156389;156390;156391;156392;156393;156394;156395;156396;156397;156398;156399;156400;156401;156402;156403;156404;156405;156406;156407;156408;156409;156410;156411;156412;156413;156414;156415 96234;96235;96236;96237;96238;96239;96240;96241;96242;96243;96244;96245;96246;96247;96248;96249;96250;96251;96252;96253;96254 96235 21 GYVPASTR Unmodified 849.43447 0.43446642 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 2 1 1 1 3 2 2 2 1 2 3 1 1 2 1 2 1 13.086 13.682 2 0.00019486 3231 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 153.15 112.46 36619000000 503100000 452060000 428630000 27507000 31270000 24247000 442770000 433360000 363660000 2121600000 2104400000 2012100000 529310000 477750000 458800000 5698600000 5714400000 6344100000 529940000 526010000 510330000 2178300000 2379400000 2327900000 8436 383 8225 156416;156417;156418;156419;156420;156421;156422;156423;156424;156425;156426;156427;156428;156429;156430;156431;156432;156433;156434;156435;156436;156437;156438;156439;156440;156441;156442;156443;156444;156445;156446;156447;156448;156449;156450;156451;156452 96255;96256;96257;96258;96259;96260;96261;96262;96263;96264;96265;96266;96267;96268;96269;96270;96271;96272;96273;96274;96275;96276;96277;96278;96279;96280;96281;96282;96283;96284;96285;96286;96287;96288;96289 96267 34 GYVVDPLGK Unmodified 946.51238 0.51238239 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.59 28.294 2 0.0055365 13223 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 74.127 73.437 3462100000 1166300000 1033000000 918690000 2622300 2411300 3014200 42857000 42137000 33494000 0 0 0 16922000 19214000 15893000 0 0 0 49671000 57835000 58103000 0 0 0 8437 1219 8226 156453;156454;156455;156456;156457;156458;156459;156460;156461;156462;156463;156464;156465;156466;156467 96290;96291 96290 1 GYVVTNNHVVDNATVIK Unmodified 1841.9636 0.9635615 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 24.541 23.571 2;3 1.1762E-49 10155 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 272.77 230.05 2749200000 209450000 200340000 179130000 3314200 3858700 3182300 245670000 203310000 190670000 22173000 20961000 19310000 222490000 171700000 194510000 2116100 1327400 1835700 262300000 282700000 270250000 15177000 12880000 10501000 8438 1044 8227 156468;156469;156470;156471;156472;156473;156474;156475;156476;156477;156478;156479;156480;156481;156482;156483;156484;156485;156486;156487;156488;156489;156490;156491;156492;156493;156494;156495;156496;156497;156498;156499;156500;156501;156502;156503;156504;156505;156506;156507;156508 96292;96293;96294;96295;96296;96297;96298;96299;96300;96301;96302;96303;96304;96305;96306;96307;96308;96309;96310;96311;96312;96313;96314;96315;96316;96317;96318;96319;96320;96321;96322;96323;96324 96318 31 GYWECGDLTLGK Unmodified 1397.6286 0.62855113 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 38.009 36.469 2 0.0070732 17705 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 63.624 61.825 13088000 0 3594700 2825900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6667500 0 0 0 0 0 8439 1116 8228 156509;156510;156511 96325 96325 1 GYYTNSFHLDVEK Unmodified 1571.7256 0.72562264 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 1 2 2 29.616 28.321 2;3 0.0025333 13093 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 59.225 58.391 361910000 2403000 3691700 4559900 0 0 0 47083000 40318000 42260000 0 0 0 37427000 37521000 38545000 0 0 0 31827000 37340000 38934000 0 0 0 8440 1323 8229 156512;156513;156514;156515;156516;156517;156518;156519;156520;156521;156522;156523;156524;156525;156526;156527;156528;156529;156530;156531 96326;96327;96328;96329;96330 96327 4 GYYYPPTLLLDVR Unmodified 1568.8239 0.82388012 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 2 2 2 52.202 50.998 2;3 4.79E-06 24872 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.87 116.55 4984700000 1059400000 1227300000 1024900000 2877300 2556200 2694000 143240000 154340000 170140000 0 0 0 122120000 127800000 108740000 593110 0 0 311090000 271220000 255760000 0 0 0 8441 1264 8230 156532;156533;156534;156535;156536;156537;156538;156539;156540;156541;156542;156543;156544;156545;156546;156547;156548;156549;156550;156551;156552;156553;156554;156555;156556;156557;156558;156559 96331;96332;96333;96334;96335;96336;96337;96338;96339;96340;96341;96342;96343;96344;96345;96346;96347;96348;96349;96350;96351;96352;96353 96346 23 HAADNALK Unmodified 838.42972 0.42971539 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.646 6.5119 2 0.0034802 1138 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.783 76.146 547930000 34073000 30797000 36364000 0 0 0 52698000 57210000 73687000 0 0 0 49624000 44212000 43529000 0 0 0 42133000 39386000 44218000 0 0 0 8442 253 8231 156560;156561;156562;156563;156564;156565;156566;156567;156568;156569;156570;156571 96354;96355;96356;96357;96358;96359;96360;96361;96362;96363;96364 96354 6 HAAGQVK Unmodified 709.38712 0.38712229 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 5.5541 6.3643 2 0.0028253 1084 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.54 110.54 260230000 83553000 86079000 67158000 0 0 0 9492200 7300200 6650900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8443 1412 8232 156572;156573;156574;156575;156576;156577 96365;96366;96367 96366 3 HAAQGLEEK Unmodified 981.48796 0.48795855 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 2 1 1 1 1 1 1 7.3609 8.2111 2 6.0233E-06 2065 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.23 145.27 537330000 55018000 35985000 82479000 0 3751100 2846800 106930000 97667000 95758000 0 0 0 5652800 7850900 6646000 0 0 0 11314000 12577000 12853000 0 0 0 8444 757 8233 156578;156579;156580;156581;156582;156583;156584;156585;156586;156587;156588;156589;156590;156591;156592;156593 96368;96369;96370;96371;96372;96373;96374;96375;96376;96377;96378;96379;96380;96381;96382;96383;96384 96378 17 HAASDSIAVIDGER Unmodified 1439.7005 0.70047052 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.954 20.438 2 5.6995E-45 8062 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 279.3 276.32 76274000 0 5171600 0 0 0 0 0 3277000 4381600 0 0 0 7501400 6307900 4478500 0 0 0 12321000 14991000 17844000 0 0 0 8445 1055 8234 156594;156595;156596;156597;156598;156599;156600;156601;156602;156603;156604 96385;96386;96387;96388;96389;96390;96391;96392;96393;96394 96388 10 HAAYIQK Unmodified 829.44464 0.44463717 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.307 11.123 2 0.00064919 2361 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 148.53 119.19 1939300000 152680000 159440000 154350000 0 0 0 56535000 223920000 150260000 0 0 0 210120000 186370000 189550000 0 0 0 115320000 230910000 109860000 0 0 0 8446 214 8235 156605;156606;156607;156608;156609;156610;156611;156612;156613;156614;156615;156616 96395;96396;96397;96398;96399;96400;96401;96402;96403;96404 96404 10 HADLLAADIDR Unmodified 1208.6149 0.61494998 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.672 22.918 2 8.9646E-05 9397 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 121.83 103.52 223050000 15434000 11830000 13516000 0 0 0 13905000 19029000 14329000 0 0 0 23463000 23004000 22017000 0 0 0 20008000 20789000 25731000 0 0 0 8447 180 8236 156617;156618;156619;156620;156621;156622;156623;156624;156625;156626;156627;156628 96405;96406;96407;96408;96409;96410;96411;96412 96412 3 HADLLAADIDRETLIK Unmodified 1792.9683 0.96831253 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.866 31.364 3 2.4019E-10 14797 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 142.45 137.95 199620000 10900000 8986100 9183800 489710 0 699300 16566000 14397000 12594000 0 0 865330 15495000 16778000 17603000 0 0 0 27827000 24182000 23053000 0 0 0 8448 180 8237 156629;156630;156631;156632;156633;156634;156635;156636;156637;156638;156639;156640;156641;156642;156643 96413;96414;96415;96416;96417;96418;96419 96416 7 HADNTLTFGPR Unmodified 1227.5996 0.59963426 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 18.354 18.728 2;3 1.3007E-20 6620 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 226.59 218.65 6402400000 955340000 924860000 818060000 21805000 18625000 20081000 299290000 167850000 167500000 49267000 40781000 36097000 464320000 120480000 346240000 22468000 28017000 25845000 581990000 596340000 628200000 21430000 22561000 24984000 8449 987 8238 156644;156645;156646;156647;156648;156649;156650;156651;156652;156653;156654;156655;156656;156657;156658;156659;156660;156661;156662;156663;156664;156665;156666;156667;156668;156669;156670;156671;156672;156673;156674;156675;156676;156677;156678;156679;156680;156681;156682;156683;156684;156685;156686 96420;96421;96422;96423;96424;96425;96426;96427;96428;96429;96430;96431;96432;96433;96434;96435;96436;96437;96438;96439;96440;96441;96442;96443;96444;96445;96446;96447;96448;96449;96450;96451;96452;96453;96454;96455;96456;96457 96455 35 HAECSVLVVR Unmodified 1168.6023 0.6022768 1502 P37903 uspF Universal stress protein F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 15.769 16.589 2;3 4.4577E-09 5337 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 223.83 203.31 2994800000 251670000 306150000 302790000 24682000 22753000 22451000 436530000 476740000 501660000 0 5444500 0 141160000 116950000 113000000 0 0 0 92930000 90980000 88881000 0 0 0 8450 1502 8239 156687;156688;156689;156690;156691;156692;156693;156694;156695;156696;156697;156698;156699;156700;156701;156702;156703;156704;156705;156706;156707;156708;156709;156710;156711;156712;156713;156714;156715;156716;156717 96458;96459;96460;96461;96462;96463;96464;96465;96466;96467;96468;96469;96470;96471;96472;96473;96474;96475;96476;96477;96478;96479;96480;96481;96482 96479 25 HAEDPTPLVCHGSWPGVITR Unmodified 2228.0797 0.079670665 1600 P52061 rdgB dITP/XTP pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.853 30.513 3;4 5.2127E-38 14775 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 205.24 204.75 1698700000 117810000 113050000 104430000 0 0 0 147030000 140280000 136150000 0 0 0 124580000 119230000 122520000 0 0 0 176940000 220330000 176330000 0 0 0 8451 1600 8240 156718;156719;156720;156721;156722;156723;156724;156725;156726;156727;156728;156729;156730;156731;156732;156733;156734;156735;156736;156737;156738;156739;156740;156741 96483;96484;96485;96486;96487;96488;96489;96490;96491;96492;96493;96494;96495;96496;96497 96483 15 HAEFLAQDDGVIHLLHVLPGSASLSLHR Unmodified 3031.5992 0.59918734 1512 P39177 uspG Universal stress protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 4 4 4 3 3 2 3 4 3 1 1 1 2 3 2 2 1 1 46.683 45.188 3;4;5;6 6.4401E-42 22388 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 222.71 220.31 4128100000 77386000 82385000 64264000 82508000 96404000 104750000 718170000 753390000 776090000 93304000 103630000 75301000 184510000 232030000 172460000 18741000 23973000 20105000 106550000 132760000 107080000 33080000 40707000 28478000 8452 1512 8241 156742;156743;156744;156745;156746;156747;156748;156749;156750;156751;156752;156753;156754;156755;156756;156757;156758;156759;156760;156761;156762;156763;156764;156765;156766;156767;156768;156769;156770;156771;156772;156773;156774;156775;156776;156777;156778;156779;156780;156781;156782;156783;156784;156785;156786;156787;156788;156789;156790;156791;156792;156793;156794;156795;156796;156797;156798;156799;156800 96498;96499;96500;96501;96502;96503;96504;96505;96506;96507;96508;96509;96510;96511;96512;96513;96514;96515;96516;96517;96518;96519;96520;96521;96522;96523;96524;96525;96526;96527;96528;96529;96530;96531;96532;96533;96534;96535;96536;96537;96538;96539 96517 41 HAEMLDVIVK Unmodified 1153.6165 0.61652988 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.984 26.715 2 1.1292E-06 12107 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.27 154.11 342920000 83141000 96452000 80301000 2596000 4028100 2488800 0 0 0 1377700 1780500 0 9835600 7301500 8140800 0 0 0 14693000 16185000 13582000 0 0 1014500 8453 1376 8242 156801;156802;156803;156804;156805;156806;156807;156808;156809;156810;156811;156812;156813;156814;156815 96540;96541;96542 96541 3 HAEQENMTLTELK Unmodified 1542.7348 0.73480712 1713 P67603 yqfB UPF0267 protein YqfB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 1 2 2 20.427 20.877 2;3 2.4376E-17 8157 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 247.13 247.13 347700000 49054000 50501000 34626000 0 0 0 30135000 8400400 11223000 0 0 0 28860000 31402000 25661000 0 0 0 11801000 32862000 33173000 0 0 0 8454 1713 8243 156816;156817;156818;156819;156820;156821;156822;156823;156824;156825;156826;156827;156828;156829;156830;156831;156832;156833;156834;156835;156836 96543;96544;96545;96546;96547;96548;96549;96550 96544 7 HAFDAGVK Unmodified 843.4239 0.42390173 521 P0A9H5 btuR Cob(I)yrinic acid a,c-diamide adenosyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 11.147 11.709 2 0.134 2382 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 43 13.662 285590000 0 0 0 131660000 15335000 125310000 0 0 0 0 0 0 0 0 0 2127900 5615300 0 0 0 0 5531800 0 0 8455 521 8244 156837;156838;156839;156840;156841;156842 96551 96551 1 HAFDQMLHSIGK Unmodified 1382.6765 0.67650438 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 26.622 25.416 2;3 9.4046E-17 11788 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 207.29 196.19 701160000 36773000 24211000 17877000 0 0 0 69778000 81965000 79235000 3222700 3449600 3603000 54753000 63638000 51462000 0 0 0 76157000 69145000 63178000 791460 1097800 817780 8456 30 8245 156843;156844;156845;156846;156847;156848;156849;156850;156851;156852;156853;156854;156855;156856;156857;156858;156859;156860;156861;156862;156863;156864;156865;156866;156867;156868;156869;156870 96552;96553;96554;96555;96556;96557;96558;96559;96560;96561;96562;96563;96564;96565;96566;96567;96568;96569;96570 96555 19 HAFQQLPELR Unmodified 1237.6568 0.65675521 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 2 24.446 23.548 2;3 0.047443 10845 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.04 59.742 188660000 25281000 20467000 16523000 0 0 0 12223000 13723000 0 0 0 0 14756000 14500000 12625000 0 0 0 14866000 16132000 27560000 0 0 0 8457 1230 8246 156871;156872;156873;156874;156875;156876;156877;156878;156879;156880;156881;156882;156883;156884;156885;156886;156887;156888 96571;96572 96571 0 HAGNSGTR Unmodified 798.37326 0.37326314 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 2.6203 3.5053 2 6.3142E-05 351 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 168.45 162.06 117110000 12848000 15353000 10090000 0 0 0 0 0 0 0 0 0 4514100 7874500 0 0 0 0 20138000 21176000 25113000 0 0 0 8458 937 8247 156889;156890;156891;156892;156893;156894;156895;156896;156897 96573;96574;96575;96576;96577;96578;96579;96580 96573 8 HAGPVVLIAPDMQNALR Unmodified 1800.9669 0.96687274 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 2 1 1 1 1 1 1 1 2 1 2 23.454 23.474 2;5 0.00034344 18110 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.44 62.2 158810000 23673000 18202000 15058000 706270 0 1344800 0 7215900 6602800 0 0 539600 22011000 0 0 0 0 0 22988000 16494000 23974000 0 0 0 8459 1355 8248 156898;156899;156900;156901;156902;156903;156904;156905;156906;156907;156908;156909;156910;156911;156912 96581;96582;96583;96584;96585;96586 96585 0 HAGQYDVVTCMEMLEHVPDPQSVVR Unmodified 2896.3306 0.33061833 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 2 2 2 46.738 45.202 3;4 1.6007E-30 22350 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 185.71 184.39 874710000 85794000 92310000 59829000 12438000 8285500 13497000 46590000 49858000 60808000 12779000 20178000 8999000 54936000 52268000 44985000 0 0 0 85586000 76392000 77081000 0 0 12101000 8460 1146 8249 156913;156914;156915;156916;156917;156918;156919;156920;156921;156922;156923;156924;156925;156926;156927;156928;156929;156930;156931;156932;156933;156934;156935;156936;156937;156938;156939;156940;156941;156942;156943;156944;156945;156946;156947;156948 96587;96588;96589;96590;96591;96592;96593;96594;96595;96596;96597;96598;96599;96600;96601;96602;96603;96604 96593 18 HAHDYDYVHR Unmodified 1311.5745 0.57448215 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 1 1 1 1 1 1 2 2 10.953 11.538 2;3 2.8594E-09 2365 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 197.3 194.9 386660000 0 5724900 8264200 8642600 7416700 7129300 26131000 26309000 29002000 60530000 50494000 53623000 9225000 5139400 7763700 6833300 2067300 2254200 9854100 10273000 3462500 14305000 17668000 14551000 8461 122 8250 156949;156950;156951;156952;156953;156954;156955;156956;156957;156958;156959;156960;156961;156962;156963;156964;156965;156966;156967;156968;156969;156970;156971;156972;156973;156974;156975;156976;156977;156978;156979;156980;156981;156982;156983;156984 96605;96606;96607;96608;96609;96610;96611;96612;96613 96606 8 HAHYFDTLCVEVADK Unmodified 1803.825 0.82501911 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 2 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 28.393 27.074 2;3 1.8457E-27 12756 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 243.4 236.96 1128500000 64885000 63351000 45619000 5337400 6131900 4858600 120090000 117080000 97857000 6348600 6314600 5116500 68013000 57733000 71683000 0 1966900 2386900 126710000 130470000 106970000 7960900 6083000 5556900 8462 1409 8251 156985;156986;156987;156988;156989;156990;156991;156992;156993;156994;156995;156996;156997;156998;156999;157000;157001;157002;157003;157004;157005;157006;157007;157008;157009;157010;157011;157012;157013;157014;157015;157016;157017;157018;157019 96614;96615;96616;96617;96618;96619;96620;96621;96622;96623;96624;96625;96626;96627;96628;96629;96630;96631;96632;96633;96634;96635;96636;96637;96638;96639;96640;96641 96620 28 HAIAPLLFGADHPVLK Unmodified 1697.9617 0.96171101 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.01 33.503 3;4 0.0020993 15899 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 46.964 43.344 382300000 324040000 5434900 0 1241000 1105100 770940 3571800 6244700 7973900 0 1895900 1950900 4480000 2756200 3442500 0 618930 0 5547400 6678500 4552900 0 0 0 8463 91 8252 157020;157021;157022;157023;157024;157025;157026;157027;157028;157029;157030;157031;157032;157033;157034;157035;157036;157037 96642;96643 96643 1 HAISGYMYNEK Unmodified 1311.5918 0.59177169 1884 P77202 dsbG Thiol:disulfide interchange protein DsbG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.837 15.611 2 2.853E-14 5182 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 211.78 211.54 96478000 12776000 9725300 5820400 0 0 0 8441800 7640000 5929100 0 0 0 7160300 6239200 3886300 0 0 0 8495200 8582400 11783000 0 0 0 8464 1884 8253 157038;157039;157040;157041;157042;157043;157044;157045;157046;157047;157048;157049 96644;96645;96646;96647;96648;96649;96650;96651 96648 8 HAIVAITEHMCDVDELAHFIEK Oxidation (M) 2593.2305 0.23049358 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 1 0 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.587 43.072 4 1.5593E-06 20259 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 90.972 89.895 124340000 11051000 11405000 14634000 0 0 0 9115000 13218000 12446000 0 0 0 9468900 9279100 6833400 0 0 0 8552500 8299600 10037000 0 0 0 8465 320 8254 157050;157051;157052;157053;157054;157055;157056;157057;157058;157059;157060;157061 96652;96653;96654;96655 96654 143 4 HAIVAITEHMCDVDELAHFIEK Unmodified 2577.2356 0.23557896 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 3 3 3 1 1 1 3 3 3 3 3 3 44.598 43.008 3;4;5 4.2048E-53 21549 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 258.91 258.33 4983200000 382020000 440020000 435310000 0 1385600 0 564270000 641390000 587930000 2951400 2929800 2518200 354240000 299580000 236910000 0 0 0 346680000 378900000 306120000 0 0 0 8466 320 8254 157062;157063;157064;157065;157066;157067;157068;157069;157070;157071;157072;157073;157074;157075;157076;157077;157078;157079;157080;157081;157082;157083;157084;157085;157086;157087;157088;157089;157090;157091;157092;157093;157094;157095;157096;157097;157098;157099;157100 96656;96657;96658;96659;96660;96661;96662;96663;96664;96665;96666;96667;96668;96669;96670;96671;96672;96673;96674;96675;96676;96677;96678;96679;96680;96681;96682;96683 96658 28 HAKPEEQAPIYSHIHFTSDLDEVLNDPDVK Unmodified 3443.6634 0.66336332 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 2 2 2 2 2 2 2 2 2 2 37.993 36.297 4;5 3.3657E-06 18096 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.909 76.927 800510000 29105000 10338000 30959000 0 0 0 135720000 121430000 98167000 0 0 0 54161000 68265000 60659000 0 0 0 63911000 58760000 69041000 0 0 0 8467 1588 8255 157101;157102;157103;157104;157105;157106;157107;157108;157109;157110;157111;157112;157113;157114;157115;157116;157117;157118;157119;157120;157121;157122 96684;96685;96686 96684 3 HALEETPAFQQHVDK Unmodified 1748.8482 0.84819739 1039 P0C0L7 proP Proline/betaine transporter yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.372 16.044 3 9.9541E-10 5507 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 115.12 114.12 289180000 15379000 16157000 18680000 0 0 415350 33126000 33500000 27938000 2174100 1628900 1659200 22411000 19960000 20697000 0 0 0 24077000 25411000 25966000 0 0 0 8468 1039 8256 157123;157124;157125;157126;157127;157128;157129;157130;157131;157132;157133;157134;157135;157136;157137;157138 96687;96688;96689;96690 96688 4 HALEETPAFQQHVDKLEQGDR Unmodified 2447.1829 0.18294976 1039 P0C0L7 proP Proline/betaine transporter yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.24 21.413 4 9.3666E-11 8574 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.15 127.97 112740000 6227200 5778600 6842300 0 0 678050 13660000 6838200 8107800 2282300 0 3046000 7802500 5754200 6992500 0 0 0 12157000 14528000 10904000 0 0 1139700 8469 1039 8257 157139;157140;157141;157142;157143;157144;157145;157146;157147;157148;157149;157150;157151;157152;157153;157154 96691;96692;96693;96694 96691 4 HALEETPAFQQHVDKLEQGDREGLQDGPK Unmodified 3271.5858 0.5857817 1039 P0C0L7 proP Proline/betaine transporter yes yes 0 0 2 By matching By MS/MS 1 1 24.306 22.929 5 0.04444 8292 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 37.642 37.037 6439500 0 0 0 0 1244700 0 0 0 0 5194700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8470 1039 8258 157155;157156 96695 96695 1 HALGGLTK Unmodified 795.46029 0.46028724 1422 P33368 yohF Uncharacterized oxidoreductase YohF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 11.598 12.309 2 0.00071397 3331 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.28 60.606 114150000 28774000 19852000 26954000 0 0 0 25133000 13435000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8471 1422 8259 157157;157158;157159;157160;157161 96696;96697;96698;96699 96697 3 HALPMINILTFDGDIR Unmodified 1824.9556 0.95563935 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 2 2 1 2 2 2 2 1 2 2 2 1 1 1 51.892 50.624 2;3 1.5066E-13 25053 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 167.71 162.33 2059500000 130000000 223340000 181750000 1594400 1578700 0 169020000 159870000 181870000 0 2362700 0 194570000 198290000 188100000 0 0 0 134530000 138480000 154130000 0 0 0 8472 158 8260 157162;157163;157164;157165;157166;157167;157168;157169;157170;157171;157172;157173;157174;157175;157176;157177;157178;157179;157180;157181;157182;157183;157184;157185 96700;96701;96702;96703;96704;96705 96702 6 HALQYVQPGLALVGDAAHTIHPLAGQGVNLGYR Unmodified 3435.8164 0.81639076 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 2 1 1 46.589 44.949 4;5 3.0243E-14 22342 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.12 131.82 280200000 18622000 20938000 14767000 7289400 9038200 8434200 22839000 28584000 22997000 9940700 15249000 4710000 11791000 9569600 8158500 0 0 0 40821000 12584000 13867000 0 0 0 8473 1765 8261 157186;157187;157188;157189;157190;157191;157192;157193;157194;157195;157196;157197;157198;157199;157200;157201;157202;157203;157204;157205;157206;157207;157208;157209 96706;96707;96708;96709;96710;96711;96712;96713;96714 96706 9 HALVCGPDRDYLWILSR Unmodified 2070.0469 0.046913973 476 P0A901 blc Outer membrane lipoprotein Blc yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.397 40.453 3 7.5645E-09 20226 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.4 110.45 117080000 0 6176500 5153400 4021300 2880100 4230400 18863000 17243000 11527000 8599600 6051800 6935000 0 0 2776800 0 0 0 4804000 5171100 3796700 2590500 3222800 3034300 8474 476 8262 157210;157211;157212;157213;157214;157215;157216;157217;157218;157219;157220;157221;157222;157223;157224;157225;157226;157227 96715;96716;96717;96718;96719;96720;96721;96722;96723 96717 9 HANLPVLVVR Unmodified 1116.6768 0.67676237 1512 P39177 uspG Universal stress protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 2 2 1 3 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 26.361 25.148 2;3 8.2389E-07 11517 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 198.07 177.55 3051400000 75633000 67038000 57691000 72853000 68171000 45753000 546440000 531330000 612070000 39749000 35356000 41872000 201730000 172800000 157920000 8651500 9799600 7997400 77810000 84207000 82677000 17905000 15991000 19939000 8475 1512 8263 157228;157229;157230;157231;157232;157233;157234;157235;157236;157237;157238;157239;157240;157241;157242;157243;157244;157245;157246;157247;157248;157249;157250;157251;157252;157253;157254;157255;157256;157257;157258;157259;157260;157261;157262;157263;157264;157265;157266;157267;157268;157269;157270 96724;96725;96726;96727;96728;96729;96730;96731;96732;96733;96734;96735;96736;96737;96738;96739;96740;96741;96742;96743;96744;96745;96746;96747;96748;96749;96750;96751;96752;96753;96754;96755;96756;96757 96737 30 HANPQTADR Unmodified 1008.4737 0.47370547 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.2742 6.9379 2 0.00025041 1029 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 122.18 110.45 796580000 61028000 61631000 59608000 0 0 0 64723000 57723000 66878000 0 0 0 68936000 52803000 49123000 8345600 11365000 7996700 77503000 78743000 70178000 0 0 0 8476 197 8264 157271;157272;157273;157274;157275;157276;157277;157278;157279;157280;157281;157282;157283;157284;157285 96758;96759;96760;96761;96762;96763;96764;96765;96766;96767 96763 10 HAPGDYTPTVK Unmodified 1184.5826 0.58258722 437 P0A8J4 ybeD UPF0250 protein YbeD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.705 13.549 2 0.00025029 3785 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 98.055 64.792 76018000 8024600 6330100 6005100 0 0 0 7806100 5635500 0 0 0 0 8556100 5382300 4203400 0 0 0 10436000 7667900 5971300 0 0 0 8477 437 8265 157286;157287;157288;157289;157290;157291;157292;157293;157294;157295;157296;157297 96768;96769 96769 2 HAPGDYTPTVKPSSK Unmodified 1583.7944 0.79437091 437 P0A8J4 ybeD UPF0250 protein YbeD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 3 3 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 12.05 12.697 2;3;4 2.183E-08 3476 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 179.35 173.11 1788700000 129450000 127960000 110530000 62287000 46588000 59227000 139840000 22507000 138900000 41516000 38313000 33611000 93001000 96901000 96114000 27869000 17583000 25632000 132690000 140820000 142350000 18320000 25170000 21462000 8478 437 8266 157298;157299;157300;157301;157302;157303;157304;157305;157306;157307;157308;157309;157310;157311;157312;157313;157314;157315;157316;157317;157318;157319;157320;157321;157322;157323;157324;157325;157326;157327;157328;157329;157330;157331;157332;157333;157334;157335;157336;157337;157338;157339;157340;157341;157342;157343;157344;157345;157346;157347;157348 96770;96771;96772;96773;96774;96775;96776;96777;96778;96779;96780;96781;96782;96783;96784;96785;96786;96787;96788;96789;96790;96791;96792;96793;96794;96795;96796;96797;96798;96799;96800;96801;96802;96803;96804;96805;96806 96781 36 HAPLAVR Unmodified 762.45006 0.4500569 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.431 12.037 2 0.0011046 2308 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 136.44 130.9 1205600000 57354000 55085000 56072000 22033000 16244000 22677000 77310000 79393000 75892000 51604000 47776000 42324000 52076000 51599000 50498000 11030000 8378900 10827000 111820000 93828000 99777000 29150000 40666000 42155000 8479 252 8267 157349;157350;157351;157352;157353;157354;157355;157356;157357;157358;157359;157360;157361;157362;157363;157364;157365;157366;157367;157368;157369;157370;157371;157372 96807;96808;96809;96810;96811;96812;96813;96814;96815;96816;96817;96818 96814 12 HAPLLVR Unmodified 804.49701 0.49700709 1696 P64606 mlaE Probable phospholipid ABC transporter permease protein MlaE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 13.105 13.993 2 0.0070833 4054 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 92.785 47.982 69119000 0 0 0 0 0 0 16474000 6187600 5009200 0 0 0 5503600 4500100 5924300 0 0 0 9828000 6118400 9573600 0 0 0 8480 1696 8268 157373;157374;157375;157376;157377;157378;157379;157380;157381 96819;96820 96820 2 HAPNTGTR Unmodified 852.42021 0.42021334 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 6.4153 7.1478 2 0.00057661 1274 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 132.09 125.86 424680000 175290000 131930000 117460000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8481 1888 8269 157382;157383;157384 96821;96822;96823 96822 3 HAPNVMGCAQLIAQVFK Unmodified 1882.9546 0.95459349 1825 P76149 sad Succinate semialdehyde dehydrogenase [NAD(P)+] Sad yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 1 1 1 1 1 1 1 1 1 46.764 45.377 2;3 1.2416E-10 22125 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.28 133.4 91979000 26409000 21014000 5730300 0 0 0 5745300 3733400 6976700 0 0 0 3647900 3145400 3132300 0 0 0 4529200 7915300 0 0 0 0 8482 1825 8270 157385;157386;157387;157388;157389;157390;157391;157392;157393;157394;157395;157396;157397 96824;96825;96826;96827 96826 2 HAPTGTPVLVDGVR Unmodified 1417.7678 0.76776222 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 21.185 21.531 2;3 8.723E-06 8621 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 125.24 114.87 796190000 167150000 154880000 127120000 0 0 560820 30830000 22180000 21739000 0 0 0 26601000 22351000 24674000 0 0 0 67284000 72270000 58553000 0 0 0 8483 1326 8271 157398;157399;157400;157401;157402;157403;157404;157405;157406;157407;157408;157409;157410;157411;157412;157413;157414;157415;157416;157417;157418;157419;157420;157421;157422 96828;96829;96830;96831;96832;96833;96834;96835;96836;96837;96838;96839;96840;96841;96842;96843 96832 13 HAPTPAEAK Unmodified 920.47158 0.4715802 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 8.4766 9.1356 2 5.6426E-05 1909 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 147.36 130.82 1565300000 120950000 128280000 126000000 9493100 0 7272600 147460000 164310000 135210000 52247000 30195000 36302000 127500000 112640000 127820000 16719000 15591000 21107000 111400000 3769100 3538100 23180000 24199000 20072000 8484 882 8272 157423;157424;157425;157426;157427;157428;157429;157430;157431;157432;157433;157434;157435;157436;157437;157438;157439;157440;157441;157442;157443;157444;157445;157446;157447;157448;157449;157450;157451;157452;157453;157454 96844;96845;96846;96847;96848;96849;96850;96851;96852;96853;96854;96855;96856;96857;96858 96848 15 HAQEEMTHMQR Unmodified 1396.5976 0.59760213 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 10.736 11.298 2;3 9.6639E-69 2249 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 340.33 337.07 3803100000 30901000 34222000 35655000 0 0 0 551620000 567090000 527640000 160550000 164950000 154780000 295090000 286890000 204480000 2099300 2508300 1369500 237040000 200970000 224720000 40602000 36005000 43949000 8485 501 8273 157455;157456;157457;157458;157459;157460;157461;157462;157463;157464;157465;157466;157467;157468;157469;157470;157471;157472;157473;157474;157475;157476;157477;157478;157479;157480;157481;157482;157483;157484;157485;157486;157487;157488;157489;157490;157491;157492;157493 96859;96860;96861;96862;96863;96864;96865;96866;96867;96868;96869;96870;96871;96872;96873;96874;96875;96876;96877;96878;96879;96880;96881;96882;96883;96884;96885;96886;96887;96888;96889;96890 96863 32 HAQEEMTHMQR Oxidation (M) 1412.5925 0.59251675 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1 1 10.148 10.689 2;3 0.00038245 1871 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.658 84.013 82159000 0 0 0 0 0 0 8299300 7033900 6993600 23415000 20270000 13445000 0 0 0 0 0 0 2701800 0 0 0 0 0 8486 501 8273 157494;157495;157496;157497;157498;157499;157500;157501;157502;157503;157504 96891;96892;96893;96894;96895;96896 96891 302;303 6 HASDDEPFSALAFK Unmodified 1533.71 0.70997257 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 2 35.705 34.282 2;3 8.9914E-56 16393 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 295.07 283.98 21842000000 1932000000 1831200000 1685600000 18441000 16063000 17292000 1398200000 1550900000 1517500000 0 12842000 9772000 1641700000 1535200000 1609500000 9795700 7531300 5515000 2236000000 2339200000 2435900000 7197800 9256700 15051000 8487 264 8274 157505;157506;157507;157508;157509;157510;157511;157512;157513;157514;157515;157516;157517;157518;157519;157520;157521;157522;157523;157524;157525;157526;157527;157528;157529;157530;157531;157532;157533;157534;157535;157536;157537;157538;157539;157540;157541;157542;157543;157544;157545;157546 96897;96898;96899;96900;96901;96902;96903;96904;96905;96906;96907;96908;96909;96910;96911;96912;96913;96914;96915;96916;96917;96918;96919;96920;96921;96922;96923;96924;96925;96926;96927;96928;96929;96930;96931;96932;96933;96934;96935;96936;96937;96938;96939;96940;96941;96942;96943 96918 47 HATEVLGFDVCLDHHADDFAEQLAK Unmodified 2837.3079 0.30789228 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 1 2 2 42.309 40.575 3;4 1.8338E-60 19840 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 254.87 254.87 683910000 109240000 126340000 106000000 0 0 0 84169000 71413000 68545000 0 0 0 17081000 20711000 0 0 0 0 18988000 28653000 32770000 0 0 0 8488 1817 8275 157547;157548;157549;157550;157551;157552;157553;157554;157555;157556;157557;157558;157559;157560;157561;157562;157563;157564;157565;157566 96944;96945;96946;96947;96948;96949;96950 96950 7 HATNSELLCEAFLHAFTGQPLPDDADLR Unmodified 3137.4876 0.48764756 461 P0A8U6 metJ Met repressor yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.981 51.558 4 1.7941E-07 25208 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 94.192 92.108 266450000 28150000 22713000 21717000 0 0 0 26928000 29325000 21421000 0 0 0 17393000 18422000 16892000 0 0 0 22698000 21509000 19282000 0 0 0 8489 461 8276 157567;157568;157569;157570;157571;157572;157573;157574;157575;157576;157577;157578 96951;96952;96953;96954;96955 96952 5 HAVIALTSIYGVGK Unmodified 1427.8136 0.81364979 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 34.296 32.822 2;3 1.3895E-14 15600 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 227.94 223.6 5282900000 830190000 782140000 706250000 18341000 20494000 19093000 198240000 195310000 195210000 58619000 56110000 58352000 269100000 268440000 216200000 31430000 22645000 21733000 436910000 388840000 407360000 25988000 27602000 28313000 8490 368 8277 157579;157580;157581;157582;157583;157584;157585;157586;157587;157588;157589;157590;157591;157592;157593;157594;157595;157596;157597;157598;157599;157600;157601;157602;157603;157604;157605;157606;157607;157608;157609;157610;157611;157612;157613;157614;157615;157616;157617;157618;157619;157620;157621;157622;157623;157624;157625;157626;157627;157628 96956;96957;96958;96959;96960;96961;96962;96963;96964;96965;96966;96967;96968;96969;96970;96971;96972;96973;96974;96975;96976;96977;96978;96979;96980;96981;96982;96983;96984;96985;96986;96987;96988;96989;96990;96991;96992;96993;96994;96995;96996;96997;96998;96999;97000;97001;97002;97003;97004;97005;97006;97007 96995 52 HAVTEASPMVK Unmodified 1168.591 0.59104341 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 12.462 13.032 2;3 1.4461E-19 3462 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 227.99 192.55 7415600000 1135500000 994410000 937710000 13217000 10731000 10197000 418100000 440300000 469820000 41665000 37368000 41953000 441970000 418830000 366210000 41748000 26090000 32717000 465730000 500120000 476070000 37618000 26425000 31193000 8491 66 8278 157629;157630;157631;157632;157633;157634;157635;157636;157637;157638;157639;157640;157641;157642;157643;157644;157645;157646;157647;157648;157649;157650;157651;157652;157653;157654;157655;157656;157657;157658;157659;157660;157661;157662;157663;157664;157665;157666 97008;97009;97010;97011;97012;97013;97014;97015;97016;97017;97018;97019;97020;97021;97022;97023;97024;97025;97026;97027;97028 97027 17 HAVTEASPMVK Oxidation (M) 1184.586 0.58595803 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.154 11.838 2 1.5697E-05 2973 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 144.65 134.74 624350000 69934000 68251000 67195000 0 0 0 47117000 34355000 40059000 2360200 4162200 1653900 36735000 38497000 37495000 0 0 0 61133000 60348000 55058000 0 0 0 8492 66 8278 157667;157668;157669;157670;157671;157672;157673;157674;157675;157676;157677;157678;157679;157680;157681 97029;97030;97031;97032;97033;97034 97034 29 6 HAVTEQWLCAR Unmodified 1369.6561 0.65610329 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.976 22.027 3 0.1397 8513 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 21.78 21.408 68673000 8917000 7603800 4190600 0 0 0 0 0 4013600 0 0 0 4729900 6654100 4501400 0 0 0 8520000 9293400 9267300 981970 0 0 8493 1979 8279 157682;157683;157684;157685;157686;157687;157688;157689;157690;157691;157692 97035 97035 0 HAWLELANQIVDVK Unmodified 1634.878 0.87804096 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 2 2 2 2 2 2 2 2 45.417 43.958 2;3 4.3151E-11 20630 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 171.32 156.31 307300000 2034500 2095900 0 0 0 0 38924000 36338000 32001000 0 0 0 29845000 32422000 23903000 0 0 0 35880000 38618000 35236000 0 0 0 8494 1424 8280 157693;157694;157695;157696;157697;157698;157699;157700;157701;157702;157703;157704;157705;157706;157707;157708;157709;157710;157711;157712 97036;97037;97038;97039 97038 4 HAWVTGPLGEK Unmodified 1193.6193 0.61930707 1209 P23524 garK Glycerate 2-kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 21.607 21.799 2 0.075444 9069 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 40.725 32.261 42432000 0 5390600 0 0 0 0 0 0 0 0 0 0 10923000 7085400 9357300 0 0 0 9675500 0 0 0 0 0 8495 1209 8281 157713;157714;157715;157716;157717 97040 97040 0 HCAVGIEPNR Unmodified 1151.5506 0.55057558 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 1 1 2 2 2 12.06 12.88 2;3 0.00094325 3641 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.639 74.651 543030000 139710000 84388000 107590000 0 0 0 19090000 28048000 16957000 0 0 0 18392000 11174000 8550600 0 0 0 33195000 33090000 42840000 0 0 0 8496 106 8282 157718;157719;157720;157721;157722;157723;157724;157725;157726;157727;157728;157729;157730;157731;157732;157733;157734;157735;157736;157737 97041;97042;97043;97044;97045;97046;97047;97048;97049;97050;97051;97052 97045 3 HCEFEEVAHLLIHGK Unmodified 1817.8883 0.88828807 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 36.239 34.834 4 3.2805E-06 16626 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.531 97.841 441110000 145360000 146150000 148560000 1045100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8497 1374 8283 157738;157739;157740;157741 97053;97054;97055 97055 3 HCPRPIVMPLSNPTSR Unmodified 1860.9451 0.94509144 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 1 2 1 3 3 3 3 3 3 3 3 3 1 1 21.402 21.641 2;3;4 0.0001386 8967 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.85 70.819 1413300000 71991000 84206000 80522000 685290 1219800 739260 111080000 82711000 98533000 0 0 0 93642000 120170000 137020000 0 0 0 173620000 196170000 159790000 552830 666260 0 8498 1283 8284 157742;157743;157744;157745;157746;157747;157748;157749;157750;157751;157752;157753;157754;157755;157756;157757;157758;157759;157760;157761;157762;157763;157764;157765;157766;157767;157768;157769;157770;157771;157772;157773;157774;157775;157776;157777;157778;157779;157780;157781;157782 97056;97057;97058;97059;97060;97061;97062;97063;97064;97065;97066 97060 6 HCQETGLSLSGLMMK Unmodified 1690.7841 0.78408227 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 1 2 1 2 2 2 2 2 2 35.397 33.846 2;3 1.6955E-07 16236 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.22 146.13 214180000 18605000 16592000 6472500 2548000 3166100 3027400 13222000 6314500 12401000 1241200 0 0 13738000 14209000 11751000 0 0 0 28446000 30772000 31668000 0 0 0 8499 1343 8285 157783;157784;157785;157786;157787;157788;157789;157790;157791;157792;157793;157794;157795;157796;157797;157798;157799;157800;157801;157802;157803;157804;157805;157806;157807;157808 97067;97068;97069;97070;97071;97072 97070 6 HDAIQFAWELLTSEK Unmodified 1786.889 0.88899957 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.613 53.165 2;3 6.9559E-46 25044 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 357.61 348.18 2042200000 186710000 181920000 163590000 0 0 0 165800000 126380000 119700000 0 0 0 180160000 153310000 159100000 0 0 0 226530000 189650000 189310000 0 0 0 8500 59 8286 157809;157810;157811;157812;157813;157814;157815;157816;157817;157818;157819;157820;157821;157822;157823;157824;157825;157826;157827;157828;157829;157830;157831;157832 97073;97074;97075;97076;97077;97078;97079;97080;97081;97082;97083;97084;97085;97086;97087;97088;97089;97090;97091;97092;97093 97093 21 HDALISK Unmodified 782.42865 0.42865276 1622 P60546 gmk Guanylate kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.978 11.794 2 0.0015598 2972 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 127.84 83.233 1004300000 75404000 73761000 81444000 0 0 0 91342000 82881000 100200000 0 0 0 75356000 79485000 68777000 0 0 0 94385000 89707000 91547000 0 0 0 8501 1622 8287 157833;157834;157835;157836;157837;157838;157839;157840;157841;157842;157843;157844 97094;97095;97096;97097;97098;97099;97100;97101;97102 97098 9 HDASDFETNTEDK Unmodified 1507.6063 0.60629536 1957 Q46845 yghU Disulfide-bond oxidoreductase YghU yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 12.353 13.067 2 2.5583E-08 3806 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 168.85 168.6 23346000 7532500 7260400 5276100 0 0 0 0 3277300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8502 1957 8288 157845;157846;157847;157848 97103 97103 0 HDASDFETNTEDKR Unmodified 1663.7074 0.70740639 1957 Q46845 yghU Disulfide-bond oxidoreductase YghU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 11.463 12.286 2;3 3.0462E-81 3287 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 341.46 341.46 942700000 167070000 155340000 135580000 0 0 0 88815000 89462000 82325000 0 0 0 30529000 34471000 35970000 0 0 0 42660000 39724000 40760000 0 0 0 8503 1957 8289 157849;157850;157851;157852;157853;157854;157855;157856;157857;157858;157859;157860;157861;157862;157863;157864;157865;157866;157867;157868;157869;157870;157871 97104;97105;97106;97107;97108;97109;97110;97111;97112;97113;97114;97115;97116;97117;97118 97112 15 HDAVIAEMQQLGVR Unmodified 1565.7984 0.79841043 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 34.822 33.354 2;3 2.8446E-11 15245 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 174.4 170.1 520130000 10881000 10388000 28104000 0 0 0 58562000 56278000 50451000 0 0 0 46213000 48371000 44637000 0 0 0 55338000 56491000 54417000 0 0 0 8504 509 8290 157872;157873;157874;157875;157876;157877;157878;157879;157880;157881;157882;157883;157884;157885;157886;157887;157888;157889;157890;157891;157892;157893 97119;97120;97121;97122;97123;97124;97125;97126;97127;97128;97129 97126 10 HDAVLEAGGLHIIGTER Unmodified 1786.9326 0.93259572 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 3 3 3 3 3 3 3 3 3 2 2 2 3 3 3 2 3 3 3 3 29.705 28.346 2;3;4 1.6311E-24 9514 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 209.33 197.64 2504400000 4705800 88503000 79183000 17829000 15583000 18291000 148310000 152670000 158680000 136530000 120580000 146940000 109870000 120080000 114290000 91451000 77048000 88299000 179880000 169650000 164300000 101980000 94755000 104960000 8505 1057 8291 157894;157895;157896;157897;157898;157899;157900;157901;157902;157903;157904;157905;157906;157907;157908;157909;157910;157911;157912;157913;157914;157915;157916;157917;157918;157919;157920;157921;157922;157923;157924;157925;157926;157927;157928;157929;157930;157931;157932;157933;157934;157935;157936;157937;157938;157939;157940;157941;157942;157943;157944;157945;157946;157947;157948;157949;157950;157951;157952;157953;157954;157955;157956;157957 97130;97131;97132;97133;97134;97135;97136;97137;97138;97139;97140;97141;97142;97143;97144;97145;97146;97147;97148;97149;97150;97151;97152;97153;97154;97155;97156;97157;97158;97159;97160;97161;97162;97163;97164;97165;97166;97167;97168;97169;97170;97171 97130 42 HDAVLIEAMESR Unmodified 1369.666 0.66599927 1436 P34209 ydcF Protein YdcF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 1 1 29.228 28.036 2;3 6.0466E-12 13018 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 193.83 175.05 175140000 38833000 37404000 31063000 0 0 0 5848300 5178300 6036700 0 0 0 8758200 6939800 10576000 0 0 0 11702000 6033200 6770100 0 0 0 8506 1436 8292 157958;157959;157960;157961;157962;157963;157964;157965;157966;157967;157968;157969;157970;157971;157972;157973;157974;157975;157976 97172;97173;97174;97175 97172 4 HDDDGVTIETADGEYQAK Unmodified 1962.8443 0.8442938 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 22.326 21.834 2;3 2.4547E-21 8898 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 176.51 176.51 355480000 39384000 36100000 30909000 0 0 0 27267000 25407000 25571000 0 0 0 30323000 31681000 25776000 0 0 0 29852000 28080000 25134000 0 0 0 8507 1550 8293 157977;157978;157979;157980;157981;157982;157983;157984;157985;157986;157987;157988;157989;157990;157991;157992;157993;157994;157995;157996;157997;157998;157999;158000 97176;97177;97178;97179;97180;97181;97182;97183;97184 97182 8 HDDGTGDMSR Unmodified 1089.4145 0.41453561 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5.1819 6.0922 2 3.6898E-12 1325 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 205.36 205.36 402820000 0 0 0 0 0 0 50436000 52413000 50481000 0 0 0 48755000 44567000 50080000 0 0 0 36573000 35905000 33614000 0 0 0 8508 1956 8294 158001;158002;158003;158004;158005;158006;158007;158008;158009 97185;97186;97187;97188;97189;97190 97187 6 HDDLLTYIK Unmodified 1116.5815 0.58152458 1441 P36667 wbbL Rhamnosyltransferase WbbL yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 30.818 29.578 2 0.079531 9708 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 45.382 33.237 44058000 0 0 0 0 0 0 0 0 0 4665700 0 3300100 0 0 0 1444500 945900 1776500 8241900 7979900 8338300 3513300 0 3852300 8509 1441 8295 158010;158011;158012;158013;158014;158015;158016;158017;158018;158019 97191 97191 1 HDDLQELELK Unmodified 1238.6143 0.61428128 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.839 24.618 2 6.0738E-17 10971 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 232.41 204.23 316040000 23630000 22888000 25023000 3621100 4583500 4630900 29712000 29935000 29528000 7878800 10203000 9981700 18022000 16645000 18545000 0 0 0 18363000 21246000 21601000 0 0 0 8510 1765 8296 158020;158021;158022;158023;158024;158025;158026;158027;158028;158029;158030;158031;158032;158033;158034;158035;158036;158037 97192;97193;97194;97195;97196;97197;97198;97199;97200;97201;97202;97203;97204;97205;97206;97207;97208;97209 97200 18 HDFSSIDVER Unmodified 1203.552 0.55201537 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 19.746 20.298 2 0.0032306 7789 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 74.267 66.047 48370000 4887000 3296200 3476600 0 0 0 4576200 0 0 0 0 0 4997300 4331000 4071400 0 0 0 6485500 7126500 5122600 0 0 0 8511 1932 8297 158038;158039;158040;158041;158042;158043;158044;158045;158046;158047 97210;97211;97212;97213;97214 97213 4 HDGEAEDVAVALNEQYQPR Unmodified 2139.9821 0.98212469 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 2 1 32.001 30.494 2;3 4.0029E-127 14285 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 482.41 477.5 2214000000 199310000 161400000 140170000 5419000 5066600 5263600 206870000 185840000 180250000 17523000 8763500 10277000 124230000 152860000 131750000 0 0 0 210320000 225680000 226470000 6097200 6265900 4216200 8512 62 8298 158048;158049;158050;158051;158052;158053;158054;158055;158056;158057;158058;158059;158060;158061;158062;158063;158064;158065;158066;158067;158068;158069;158070;158071;158072;158073;158074;158075;158076;158077;158078;158079;158080;158081 97215;97216;97217;97218;97219;97220;97221;97222;97223;97224;97225;97226;97227;97228;97229;97230;97231;97232;97233;97234;97235;97236;97237;97238;97239;97240;97241;97242;97243;97244 97230 30 HDGSAATCDDFVQAMEDASNVDLSHFR Unmodified 2994.2508 0.25084769 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 49.864 48.458 3;4 4.6022E-94 22717 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 308.38 308.38 4478800000 512470000 476060000 411340000 0 0 0 366320000 378400000 369540000 0 0 0 303280000 286200000 313200000 0 0 0 367870000 347710000 346410000 0 0 0 8513 94 8299 158082;158083;158084;158085;158086;158087;158088;158089;158090;158091;158092;158093;158094;158095;158096;158097;158098;158099;158100;158101;158102;158103;158104;158105 97245;97246;97247;97248;97249;97250;97251;97252;97253;97254;97255;97256;97257;97258;97259;97260;97261;97262;97263;97264;97265;97266;97267;97268 97266 24 HDIATGATGR Unmodified 997.49411 0.49410656 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.741 11.276 2 8.0822E-07 2675 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 171.73 140.44 773970000 5034200 0 4058000 0 0 0 156340000 125960000 124340000 10027000 8329100 5798500 73064000 71855000 64521000 2963300 3226700 2698000 37506000 36983000 39074000 0 0 2200100 8514 506 8300 158106;158107;158108;158109;158110;158111;158112;158113;158114;158115;158116;158117;158118;158119;158120;158121;158122;158123 97269;97270;97271;97272;97273;97274;97275;97276 97271 7 HDIEGNR Unmodified 839.38858 0.38857886 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 5.215 6.1149 2 1.7145E-05 1512 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 144.9 114.46 1296500000 613500000 524220000 0 12999000 11873000 0 0 30332000 29046000 0 0 0 12210000 9082700 14125000 0 0 0 11898000 13164000 14029000 0 0 0 8515 921 8301 158124;158125;158126;158127;158128;158129;158130;158131;158132;158133;158134;158135;158136 97277;97278;97279;97280;97281;97282;97283 97283 6 HDITESMLELATDVCR Unmodified 1888.8659 0.86589764 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 1 1 1 1 1 50.029 48.62 2;3 1.8224E-10 23978 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 145.49 143.62 184040000 38941000 35807000 35508000 0 0 0 11338000 16360000 12099000 0 0 0 6191500 4098900 4709800 0 0 0 7871800 5474800 5637800 0 0 0 8516 1887 8302 158137;158138;158139;158140;158141;158142;158143;158144;158145;158146;158147;158148;158149;158150;158151;158152 97284;97285;97286;97287;97288;97289;97290;97291;97292;97293;97294;97295;97296 97286 4 HDLAVEPPAPTVLQK Unmodified 1613.8777 0.8777066 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 29.421 28.165 2;3 4.8312E-20 13333 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 252.21 240.15 3707000000 342000000 302540000 347940000 0 0 0 448790000 447340000 424170000 0 0 0 195130000 242850000 195490000 0 0 0 238520000 253900000 268370000 0 0 0 8517 256 8303 158153;158154;158155;158156;158157;158158;158159;158160;158161;158162;158163;158164;158165;158166;158167;158168;158169;158170;158171;158172;158173;158174;158175;158176 97297;97298;97299;97300;97301;97302;97303;97304;97305;97306;97307;97308;97309;97310;97311;97312;97313;97314;97315;97316;97317;97318;97319;97320 97300 24 HDLDALHAYR Unmodified 1209.5891 0.58906958 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 16.238 17.114 3 2.7395E-05 5967 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.67 102.78 109850000 29507000 33203000 36505000 3839400 3578000 3213100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8518 46 8304 158177;158178;158179;158180;158181;158182 97321;97322;97323 97323 3 HDLENPTAPK Unmodified 1120.5513 0.55128709 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.075 12.739 2 4.1949E-07 3437 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 175.93 167.59 361850000 48505000 42000000 37617000 0 0 0 25636000 21500000 31973000 0 0 0 29204000 22365000 18172000 16861000 1828700 2143500 23354000 19570000 21116000 0 0 0 8519 1508 8305 158183;158184;158185;158186;158187;158188;158189;158190;158191;158192;158193;158194;158195;158196;158197 97324;97325;97326;97327;97328;97329;97330;97331;97332;97333;97334 97325 11 HDLYLSTLVVRPGDK Unmodified 1711.9257 0.92571943 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.036 29.417 3 5.3746E-06 11200 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 89.624 85.076 129750000 9359700 7045500 4580700 1037200 769740 1625200 13129000 11639000 16944000 6496300 7159600 7067600 4388400 0 4131100 0 0 0 9374900 7806700 10065000 1931800 2500400 2694900 8520 1877 8306 158198;158199;158200;158201;158202;158203;158204;158205;158206;158207;158208;158209;158210;158211;158212;158213;158214;158215;158216;158217 97335;97336;97337 97337 3 HDMDSLAER Unmodified 1072.4608 0.46075752 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.846 13.52 2 4.3417E-30 3962 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 274.55 263.33 751770000 65709000 71166000 66426000 16363000 966990 17751000 58059000 65298000 54092000 2506500 1486000 0 43921000 51287000 42810000 12702000 8856500 13277000 50761000 51887000 56446000 0 0 0 8521 37 8307 158218;158219;158220;158221;158222;158223;158224;158225;158226;158227;158228;158229;158230;158231;158232;158233;158234;158235;158236;158237 97338;97339;97340;97341;97342;97343;97344;97345;97346;97347;97348;97349;97350;97351;97352 97342 15 HDMQHLLK Unmodified 1020.5175 0.51748454 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.414 13.236 2 0.0015526 3808 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.9 98.655 490160000 48021000 35765000 39055000 0 0 0 51817000 57558000 61682000 0 0 0 0 43236000 42752000 0 0 0 38378000 34414000 37485000 0 0 0 8522 421 8308 158238;158239;158240;158241;158242;158243;158244;158245;158246;158247;158248 97353;97354;97355 97353 3 HDMQVTVEPR Unmodified 1210.5765 0.57645598 1605 P52108 rstA Transcriptional regulatory protein RstA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 14.657 15.22 2;3 1.5812E-06 5072 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 163.38 153.47 287380000 13031000 13556000 15322000 1403900 1365400 1011000 23142000 23057000 23416000 4955800 4378100 2444900 20251000 22189000 18367000 4147900 0 2419700 25754000 27116000 29845000 3262500 4029700 2914500 8523 1605 8309 158249;158250;158251;158252;158253;158254;158255;158256;158257;158258;158259;158260;158261;158262;158263;158264;158265;158266;158267;158268;158269;158270;158271;158272;158273;158274;158275;158276;158277;158278;158279;158280;158281;158282;158283;158284;158285;158286;158287;158288;158289;158290;158291;158292 97356;97357;97358;97359 97358 2 HDPQAQK Unmodified 822.39842 0.39841526 1463 P37313 dppF Dipeptide transport ATP-binding protein DppF yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 5.5688 6.3013 2 0.0023475 1002 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.89 96.122 19932000 6817800 6738300 6375500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8524 1463 8310 158293;158294;158295 97360;97361 97360 2 HDQLLMLIAER Unmodified 1337.7126 0.71255553 1389 P32144 yihW Uncharacterized HTH-type transcriptional regulator YihW yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 39.857 38.327 3 0.1153 18706 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 34.179 28.145 10984000 4786500 0 3046900 0 0 0 0 0 0 0 0 0 0 1215100 0 0 0 0 1935500 0 0 0 0 0 8525 1389 8311 158296;158297;158298;158299 97362 97362 0 HDRDIER Unmodified 939.45224 0.45224175 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 4.7526 5.6407 2 0.00039076 963 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 163.9 131 103200000 0 0 0 0 0 0 17943000 14055000 16435000 0 0 0 6251700 8551300 9027200 0 0 0 13077000 9290400 8564500 0 0 0 8526 1323 8312 158300;158301;158302;158303;158304;158305;158306;158307;158308 97363;97364;97365;97366;97367;97368 97367 6 HDSGDPVEWGEK Unmodified 1354.579 0.5789584 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 2 2 2 17.677 18.357 2;3 3.0012E-06 6412 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 138.22 130.18 229070000 6870400 24018000 5912100 0 0 0 18017000 21531000 21143000 0 0 0 20730000 17636000 18424000 0 0 0 26012000 25343000 23436000 0 0 0 8527 1148 8313 158309;158310;158311;158312;158313;158314;158315;158316;158317;158318;158319;158320;158321;158322;158323;158324;158325;158326;158327;158328;158329;158330 97369;97370;97371;97372;97373;97374;97375;97376;97377 97376 8 HDTTVILYGR Unmodified 1173.6142 0.6142217 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 19.931 20.406 2;3 1.1301E-12 7431 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 219.56 212.83 901740000 9895300 8828500 9579300 0 0 0 119510000 102900000 111810000 0 0 0 108570000 109560000 103090000 0 0 0 74057000 63798000 80129000 0 0 0 8528 1947 8314 158331;158332;158333;158334;158335;158336;158337;158338;158339;158340;158341;158342;158343;158344;158345;158346;158347;158348;158349;158350;158351 97378;97379;97380;97381;97382;97383;97384;97385;97386;97387;97388;97389;97390 97389 8 HDVEVLK Unmodified 838.45487 0.45486751 846 P0AEC3 arcB Aerobic respiration control sensor protein ArcB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.227 12.978 2 0.001975 3670 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.49 63.386 452310000 46257000 58806000 52166000 1776500 2088600 2510700 63224000 57122000 0 4585000 0 4282400 32044000 28547000 32411000 0 0 1485800 0 33187000 31812000 0 0 0 8529 846 8315 158352;158353;158354;158355;158356;158357;158358;158359;158360;158361;158362;158363;158364;158365;158366;158367 97391;97392;97393;97394;97395;97396;97397;97398;97399;97400 97391 10 HDVNFSVAQAAMEAFGDCIEVK Unmodified 2437.1042 0.10423044 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.835 52.396 2;3 4.6567E-43 24641 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 278.85 271.48 558990000 25960000 27115000 27226000 0 0 0 58408000 57877000 61493000 0 0 0 46524000 51448000 49737000 0 0 0 51692000 49950000 51562000 0 0 0 8530 1868 8316 158368;158369;158370;158371;158372;158373;158374;158375;158376;158377;158378;158379;158380;158381;158382;158383;158384;158385;158386;158387;158388;158389;158390;158391 97401;97402;97403;97404;97405;97406;97407;97408;97409;97410;97411 97410 11 HEATRPLVFSPNYYQTR Unmodified 2078.0334 0.033372399 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.236 24.259 3 3.5785E-14 10224 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 136.35 117.28 322100000 17322000 10480000 9742600 7590500 6838300 5111900 29561000 28712000 29005000 11115000 0 0 20613000 20094000 22075000 5005200 2564300 2732500 33464000 32354000 27724000 0 0 0 8531 1854 8317 158392;158393;158394;158395;158396;158397;158398;158399;158400;158401;158402;158403;158404;158405;158406;158407;158408;158409;158410 97412;97413;97414;97415;97416;97417;97418;97419;97420 97420 6 HEAWITLEK Unmodified 1125.5819 0.58185893 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 3 2 3 2 2 2 2 2 3 2 2 2 23.5 22.745 2;3 3.8186E-11 10217 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 206.78 160.36 2188600000 329670000 202430000 182980000 11808000 11480000 11569000 10526000 9243200 9369000 32293000 24988000 25512000 158090000 171040000 182120000 34501000 23583000 22815000 233910000 213670000 220320000 20481000 23717000 22494000 8532 990 8318 158411;158412;158413;158414;158415;158416;158417;158418;158419;158420;158421;158422;158423;158424;158425;158426;158427;158428;158429;158430;158431;158432;158433;158434;158435;158436;158437;158438;158439;158440;158441;158442;158443;158444;158445;158446;158447;158448;158449;158450;158451;158452;158453;158454;158455;158456;158457;158458 97421;97422;97423;97424;97425;97426;97427;97428;97429;97430;97431;97432;97433;97434;97435;97436;97437;97438;97439;97440;97441;97442;97443;97444;97445;97446 97431 24 HEDFPYQEILLTR Unmodified 1659.8257 0.82567103 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 42.577 40.927 2;3 4.5928E-09 19800 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 160.38 158.55 1806800000 146420000 150940000 149960000 4019900 4075800 5621100 110190000 114390000 113130000 7300500 6311600 7747800 121290000 118280000 114010000 5589900 6183200 4410500 212780000 191560000 204510000 3548600 4516400 0 8533 744 8319 158459;158460;158461;158462;158463;158464;158465;158466;158467;158468;158469;158470;158471;158472;158473;158474;158475;158476;158477;158478;158479;158480;158481;158482;158483;158484;158485;158486;158487;158488;158489;158490;158491;158492;158493;158494;158495;158496 97447;97448;97449;97450;97451;97452;97453;97454;97455;97456;97457;97458;97459;97460;97461;97462;97463;97464;97465;97466;97467;97468;97469;97470;97471 97461 25 HEDMYTAINELINK Unmodified 1689.8032 0.80322103 768 P0AD49 raiA Ribosome-associated inhibitor A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 45.146 43.757 2;3 2.6956E-26 21262 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 269.81 223.81 12520000000 645930000 567160000 569340000 0 857960 1007000 2121800000 2037500000 1869600000 5997500 12895000 6283600 853000000 756420000 802790000 5294800 4147300 4281700 812480000 817850000 625290000 0 0 0 8534 768 8320 158497;158498;158499;158500;158501;158502;158503;158504;158505;158506;158507;158508;158509;158510;158511;158512;158513;158514;158515;158516;158517;158518;158519;158520;158521;158522;158523;158524;158525;158526;158527;158528;158529 97472;97473;97474;97475;97476;97477;97478;97479;97480;97481;97482;97483;97484;97485;97486;97487;97488;97489;97490;97491;97492;97493;97494;97495;97496;97497;97498 97487 27 HEDMYTAINELINKLER Unmodified 2088.031 0.030989138 768 P0AD49 raiA Ribosome-associated inhibitor A yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.964 52.84 3 4.2895E-19 19231 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 188.44 183.44 160800000 0 0 0 6709500 9947000 11947000 4552000 0 0 10834000 23265000 16498000 3576200 2551500 2423400 11368000 17617000 30793000 0 0 0 3930400 4782700 0 8535 768 8321 158530;158531;158532;158533;158534;158535;158536;158537;158538;158539;158540;158541;158542;158543;158544 97499;97500;97501;97502;97503;97504;97505 97505 7 HEEVQALLGDAQTIADQER Unmodified 2122.0291 0.029074882 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 2 1 1 2 2 2 2 2 2 40.524 38.897 2;3 4.5127E-37 18934 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 241.93 234.56 376410000 46957000 46860000 42190000 569540 0 0 27775000 18801000 21573000 0 0 0 23341000 27991000 23044000 0 0 0 31528000 38853000 26924000 0 0 0 8536 345 8322 158545;158546;158547;158548;158549;158550;158551;158552;158553;158554;158555;158556;158557;158558;158559;158560;158561;158562;158563;158564;158565;158566;158567 97506;97507;97508 97508 2 HEFPNFQGNAVINFTDANVPYTR Unmodified 2650.2564 0.25644906 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 46.514 45.007 2;3 1.4179E-28 21835 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.13 142.69 804400000 29773000 32537000 22891000 0 0 0 75040000 78773000 68624000 0 0 0 64634000 73290000 55512000 0 0 0 108050000 105570000 89716000 0 0 0 8537 1491 8323 158568;158569;158570;158571;158572;158573;158574;158575;158576;158577;158578;158579;158580;158581;158582;158583;158584;158585;158586;158587;158588 97509;97510;97511;97512;97513;97514;97515;97516;97517;97518;97519;97520 97516 12 HEFVTLEGMEK Unmodified 1318.6227 0.62273747 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.178 25.04 2 2.1812E-27 11636 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 269.59 262.02 646090000 67309000 70179000 59285000 0 0 0 75368000 65445000 68376000 0 0 0 53760000 53910000 41673000 0 0 0 34481000 26574000 29727000 0 0 0 8538 1333 8324 158589;158590;158591;158592;158593;158594;158595;158596;158597;158598;158599;158600 97521;97522;97523;97524;97525;97526;97527;97528;97529;97530;97531;97532 97522 12 HEGCCKGEK Unmodified 1103.4488 0.44881263 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 8.0882 8.315 3 0.00301 1305 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 62.823 62.823 7485500 0 0 0 0 0 0 0 0 0 2555000 1926000 1992600 0 0 0 0 0 176000 0 0 0 836010 0 0 8539 1691 8325 158601;158602;158603;158604;158605 97533;97534;97535 97533 3 HEGNELELEIHCSK Unmodified 1693.773 0.77298354 1618 P60340 truB tRNA pseudouridine synthase B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.633 18.137 3 0.00027962 6321 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 68.919 65.299 91654000 0 3914200 3646800 0 0 0 11246000 0 10254000 0 0 1437600 10801000 10992000 9340500 1965700 1784200 2175300 8561500 8217500 7316000 0 0 0 8540 1618 8326 158606;158607;158608;158609;158610;158611;158612;158613;158614;158615;158616;158617;158618;158619 97536;97537;97538;97539;97540;97541 97541 5 HEGPEGAGHLGDLPALVVNNDGK Unmodified 2295.1244 0.12437225 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 1 2 2 2 2 1 1 2 1 2 32.428 31.056 3;4 9.6414E-29 14955 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 189.82 188.07 1055700000 307390000 282610000 148320000 0 0 0 86138000 73649000 75306000 0 0 0 14581000 7054200 3894400 0 0 0 22956000 12253000 21542000 0 0 0 8541 1007 8327 158620;158621;158622;158623;158624;158625;158626;158627;158628;158629;158630;158631;158632;158633;158634;158635;158636;158637;158638;158639 97542;97543;97544;97545;97546;97547;97548;97549 97544 8 HEIDAAVEHIEK Unmodified 1389.6888 0.6888432 545 P0A9P9 idnO Gluconate 5-dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.27 16.08 3 0.16992 5235 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 11.229 9.7972 40456000 8810000 0 7583200 0 0 0 3889900 5275800 4525000 0 0 0 2703400 1725100 1583800 0 0 0 0 4359400 0 0 0 0 8542 545 8328 158640;158641;158642;158643;158644;158645;158646;158647;158648 97550 97550 1 HEIGSAYPGDEVR Unmodified 1428.6634 0.66335673 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 2 1 2 2 2 2 2 2 2 1 1 1 1 1 1 2 2 2 15.514 16.082 2;3 3.8181E-50 5527 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 302.2 283.42 538180000 35686000 32212000 30047000 1501500 1102600 1070900 71708000 99761000 79887000 7401400 6334900 5250000 19128000 16545000 17862000 0 0 0 33885000 33220000 36328000 2777200 2988400 3486200 8543 564 8329 158649;158650;158651;158652;158653;158654;158655;158656;158657;158658;158659;158660;158661;158662;158663;158664;158665;158666;158667;158668;158669;158670;158671;158672;158673;158674;158675;158676;158677;158678;158679;158680 97551;97552;97553;97554;97555;97556;97557;97558;97559;97560;97561;97562;97563 97560 13 HEIISEAEAEVAEIQEQFQSGLVTAGER Unmodified 3069.4891 0.48908735 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 1 2 2 2 4 4 4 3 3 3 3 3 4 3 2 3 5 4 5 54.998 53.768 2;3;4 2.6546E-193 20699 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 571.29 562.35 33727000000 151110000 161300000 165060000 17045000 20302000 15528000 81652000 94357000 82625000 1886100000 1865000000 2008800000 138580000 153080000 137010000 5419500000 5784900000 7077500000 212220000 210920000 194240000 2569800000 2745200000 2535400000 8544 458 8330 158681;158682;158683;158684;158685;158686;158687;158688;158689;158690;158691;158692;158693;158694;158695;158696;158697;158698;158699;158700;158701;158702;158703;158704;158705;158706;158707;158708;158709;158710;158711;158712;158713;158714;158715;158716;158717;158718;158719;158720;158721;158722;158723;158724;158725;158726;158727;158728;158729;158730;158731;158732;158733;158734;158735;158736;158737;158738;158739;158740;158741;158742;158743;158744;158745;158746;158747;158748;158749;158750;158751 97564;97565;97566;97567;97568;97569;97570;97571;97572;97573;97574;97575;97576;97577;97578;97579;97580;97581;97582;97583;97584;97585;97586;97587;97588;97589;97590;97591;97592;97593;97594;97595;97596 97572 33 HEIVAHLVER Unmodified 1201.6568 0.65675521 1469 P37351 rpiB Ribose-5-phosphate isomerase B yes yes 0 0 0 By MS/MS By matching 1 1 14.313 15.035 3 0.072632 4868 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 32.254 20.388 11543000 0 7154200 4388900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8545 1469 8331 158752;158753 97597 97597 0 HELANDR Unmodified 853.40423 0.40422892 1690 P64585 yqjE Inner membrane protein YqjE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.0298 6.8097 2 0.00027633 896 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 160.03 101.37 294210000 0 0 0 9027700 5814300 6129100 0 63751000 84521000 29009000 19747000 1482400 11509000 9484200 10805000 0 0 0 14985000 14771000 13174000 0 0 0 8546 1690 8332 158754;158755;158756;158757;158758;158759;158760;158761;158762;158763;158764;158765;158766;158767 97598;97599;97600;97601;97602;97603;97604;97605;97606 97603 8 HELAQLLGFENYAFK Unmodified 1778.8992 0.89917033 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 49.128 47.762 2;3 5.4951E-27 23205 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 267.21 263.45 847040000 94494000 94612000 93290000 379690 0 0 72664000 77818000 75692000 0 0 0 44413000 41544000 41966000 0 0 0 62109000 69349000 78706000 0 0 0 8547 1298 8333 158768;158769;158770;158771;158772;158773;158774;158775;158776;158777;158778;158779;158780;158781;158782;158783;158784;158785;158786;158787;158788;158789;158790;158791;158792 97607;97608;97609;97610;97611;97612;97613;97614;97615;97616;97617;97618;97619;97620;97621;97622;97623;97624;97625 97621 18 HELDIAPPEPPYQPDEIYDALK Unmodified 2549.2326 0.2325853 1303 P27431 roxA 50S ribosomal protein L16 arginine hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 1 1 1 1 1 3 1 2 1 2 2 2 1 1 49.66 48.269 2;3 8.6072E-11 23759 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 180.11 175.72 549800000 57803000 46162000 42569000 1893200 1322500 1744900 42736000 40665000 61031000 0 0 0 41226000 38257000 36310000 0 0 0 48572000 34477000 43862000 0 6202200 4967800 8548 1303 8334 158793;158794;158795;158796;158797;158798;158799;158800;158801;158802;158803;158804;158805;158806;158807;158808;158809;158810;158811;158812;158813;158814;158815;158816;158817 97626;97627;97628;97629;97630;97631;97632;97633;97634;97635;97636;97637;97638 97633 13 HELNIVQNNEFVDHR Unmodified 1862.9024 0.90235823 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 1 2 2 2 2 23.293 22.612 2;3 2.2479E-35 9717 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 295.78 291.47 1304900000 255860000 240030000 208420000 395650 506170 675800 51113000 53767000 46445000 0 0 0 76828000 48108000 57919000 0 0 0 74237000 99832000 90724000 0 0 0 8549 1455 8335 158818;158819;158820;158821;158822;158823;158824;158825;158826;158827;158828;158829;158830;158831;158832;158833;158834;158835;158836;158837;158838;158839;158840 97639;97640;97641;97642;97643;97644;97645;97646;97647;97648;97649;97650;97651 97646 13 HELYITTK Unmodified 1003.5338 0.53384611 1351 P30863 dkgB 2,5-diketo-D-gluconic acid reductase B yes yes 0 0 0 By MS/MS By MS/MS 1 1 13.913 14.736 2 0.0017368 4656 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 106.36 90.724 30760000 0 16338000 14422000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8550 1351 8336 158841;158842 97652;97653 97652 2 HEPELGLASGTDGLK Unmodified 1522.7627 0.76273643 1515 P39199 prmB 50S ribosomal protein L3 glutamine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 25.002 24.013 2;3 4.0919E-20 10605 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 210.15 197.53 454620000 44395000 44250000 44965000 0 0 0 28176000 37702000 31258000 0 0 0 35593000 32861000 28266000 0 0 0 43251000 42546000 41357000 0 0 0 8551 1515 8337 158843;158844;158845;158846;158847;158848;158849;158850;158851;158852;158853;158854;158855;158856;158857;158858;158859;158860;158861;158862;158863;158864;158865;158866 97654;97655;97656;97657;97658;97659;97660;97661;97662;97663;97664;97665;97666;97667;97668;97669;97670;97671;97672 97664 12 HEQGAGFIAQGMAR Unmodified 1471.699 0.69903073 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 1 1 2 1 1 19.768 20.287 2;3 2.8011E-08 7791 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.97 176.67 154240000 31286000 32415000 34814000 0 0 769870 0 8113300 4693900 0 0 0 6047900 4571000 3741500 0 0 0 12931000 8354100 6503400 0 0 0 8552 173 8338 158867;158868;158869;158870;158871;158872;158873;158874;158875;158876;158877;158878;158879;158880;158881;158882;158883;158884 97673;97674;97675;97676 97674 4 HEQLITQK Unmodified 995.53999 0.53999412 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.24 11.88 2 0.00017167 2950 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 154.49 122.02 3143200000 33294000 27223000 24783000 0 0 0 557510000 481310000 547940000 36899000 34330000 35480000 245850000 252630000 236510000 0 0 0 219730000 203230000 193770000 0 5799800 6926900 8553 501 8339 158885;158886;158887;158888;158889;158890;158891;158892;158893;158894;158895;158896;158897;158898;158899;158900;158901 97677;97678;97679;97680;97681;97682;97683 97682 4 HEQLLQER Unmodified 1051.5411 0.54105675 178 P08194 glpT Glycerol-3-phosphate transporter yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.712 12.989 2 3.9017E-12 3568 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 196.99 172.07 37367000 0 0 0 1708900 0 0 0 0 0 7379800 7439400 8156200 0 0 0 2535500 1766300 0 0 0 0 3004800 2723600 2652700 8554 178 8340 158902;158903;158904;158905;158906;158907;158908;158909;158910;158911;158912;158913;158914;158915;158916;158917;158918 97684;97685;97686;97687;97688;97689;97690;97691;97692;97693;97694;97695 97689 12 HEQPPVNVSELETMHR Unmodified 1901.9054 0.90539469 840 P0AE85 cpxP Periplasmic protein CpxP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 24.935 23.954 4 4.3016E-05 10564 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 83.37 79.402 83343000 7928900 8124900 0 0 0 0 6990400 8960400 0 0 0 0 7925900 7413800 5701000 0 0 0 11960000 9158300 9178600 0 0 0 8555 840 8341 158919;158920;158921;158922;158923;158924;158925;158926;158927;158928 97696;97697;97698;97699;97700 97700 5 HESGVVTDPQTVLPTTTLR Unmodified 2050.0695 0.069483134 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 3 1 1 1 2 3 2 1 1 2 2 2 2 2 2 1 1 2 32.979 31.404 2;3 2.5786E-55 14786 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 332.06 329.11 3135700000 294890000 239610000 221560000 1064500 1073800 685300 234780000 205370000 191170000 1950700 1743500 0 283640000 309630000 295000000 0 0 0 260950000 302900000 277400000 4354800 3324300 4546900 8556 788 8342 158929;158930;158931;158932;158933;158934;158935;158936;158937;158938;158939;158940;158941;158942;158943;158944;158945;158946;158947;158948;158949;158950;158951;158952;158953;158954;158955;158956;158957;158958;158959;158960;158961;158962;158963 97701;97702;97703;97704;97705;97706;97707;97708;97709;97710;97711;97712;97713;97714;97715;97716;97717;97718;97719;97720;97721;97722 97710 22 HESNYLR Unmodified 917.43553 0.43552905 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.817 11.632 2 0.0022589 2806 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 115.46 100.02 905690000 83300000 85722000 80876000 0 0 0 88451000 65416000 62330000 0 0 0 70538000 72884000 61227000 0 0 0 96547000 48132000 90265000 0 0 0 8557 1143 8343 158964;158965;158966;158967;158968;158969;158970;158971;158972;158973;158974;158975 97723;97724;97725;97726 97724 4 HETISEDELR Unmodified 1227.5731 0.57314474 796 P0ADP2 yigI Uncharacterized protein YigI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 14.081 14.935 2 1.0696E-08 4851 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 181.41 171.14 124860000 19633000 15810000 18770000 0 0 0 0 8550900 3938200 0 0 0 6895200 7216700 3732400 0 0 0 13279000 12491000 14542000 0 0 0 8558 796 8344 158976;158977;158978;158979;158980;158981;158982;158983;158984;158985;158986 97727;97728;97729;97730;97731;97732 97732 6 HEVDFPR Unmodified 898.42972 0.42971539 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 14.595 15.2 2 6.9177E-05 4627 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.09 110.39 93552000 1804300 0 62423000 896890 0 0 4541100 5822100 5269500 0 4822200 6240900 0 0 1732500 0 0 0 0 0 0 0 0 0 8559 1117 8345 158987;158988;158989;158990;158991;158992;158993;158994;158995;158996 97733;97734;97735 97735 3 HEVVHNR Unmodified 889.45185 0.45184782 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 3.5614 4.4493 2 0.0078225 664 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.703 89.703 17711000 0 0 0 0 0 0 5794100 6014900 5901900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8560 1650 8346 158997;158998;158999 97736;97737 97736 2 HFAALSTNAK Unmodified 1058.5509 0.55089316 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.66 13.493 2 8.1494E-41 3964 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 302.63 251.28 3704800000 288970000 337480000 300530000 0 0 0 479930000 482920000 532640000 0 0 0 208590000 211170000 252580000 0 0 0 192220000 220080000 197690000 0 0 0 8561 277 8347 159000;159001;159002;159003;159004;159005;159006;159007;159008;159009;159010;159011 97738;97739;97740;97741;97742;97743;97744;97745;97746;97747;97748;97749 97738 12 HFAATGK Unmodified 730.37622 0.37622326 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 2 2 2 1 2 2 1 1 7.7207 8.5955 2 3.9954E-08 1152 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.84 163.84 4574500000 0 241910000 265510000 0 429560 0 8898100 1223300000 1257200000 0 0 0 213210000 227190000 244370000 0 0 0 296430000 281020000 315040000 0 0 0 8562 634 8348 159012;159013;159014;159015;159016;159017;159018;159019;159020;159021;159022;159023;159024;159025;159026;159027;159028;159029;159030;159031 97750;97751;97752;97753;97754;97755;97756;97757;97758;97759;97760;97761;97762;97763;97764;97765;97766;97767;97768;97769;97770;97771;97772;97773;97774 97750 23 HFAATGKPLFSSHMIDLSEESLQENIEICSK Unmodified 3517.6858 0.68575502 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 1 1 3 3 3 1 2 1 3 2 3 3 3 3 43.308 41.688 3;4;5 1.2733E-44 20576 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 225.56 219.76 1539500000 116320000 80515000 83776000 4153900 1729000 1899800 166620000 229470000 220160000 2852500 4482000 1744900 85268000 90627000 87953000 0 0 0 132320000 118820000 110770000 0 0 0 8563 634 8349 159032;159033;159034;159035;159036;159037;159038;159039;159040;159041;159042;159043;159044;159045;159046;159047;159048;159049;159050;159051;159052;159053;159054;159055;159056;159057;159058;159059;159060;159061;159062;159063;159064;159065;159066;159067;159068;159069;159070;159071;159072;159073;159074 97775;97776;97777;97778;97779;97780;97781;97782;97783;97784;97785;97786;97787;97788;97789;97790;97791;97792 97777 18 HFAAYGAVEGGK Unmodified 1205.5829 0.58292157 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.739 15.504 2 7.3889E-17 5164 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 211.27 178.14 221100000 9262700 7039600 8808900 0 0 0 21393000 26527000 23612000 0 0 0 13813000 17214000 19718000 0 0 0 29980000 24117000 19616000 0 0 0 8564 1421 8350 159075;159076;159077;159078;159079;159080;159081;159082;159083;159084;159085;159086 97793;97794;97795;97796;97797;97798;97799;97800;97801;97802;97803;97804 97795 12 HFDEMKDVTIADLFAK Unmodified 1878.9186 0.91858514 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 1 1 3 3 3 1 1 3 2 3 44.238 42.752 2;3;4 4.174E-49 20781 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 276.45 254.12 1595600000 117310000 123150000 118300000 1824800 1167400 0 222770000 215070000 187200000 2585500 0 1774100 97886000 87357000 80206000 0 1318500 1099300 114060000 111650000 110850000 0 0 0 8565 277 8351 159087;159088;159089;159090;159091;159092;159093;159094;159095;159096;159097;159098;159099;159100;159101;159102;159103;159104;159105;159106;159107;159108;159109;159110;159111;159112;159113;159114;159115;159116;159117;159118;159119;159120;159121;159122;159123;159124;159125;159126;159127 97805;97806;97807;97808;97809;97810;97811;97812;97813;97814;97815;97816;97817;97818;97819;97820;97821;97822;97823;97824;97825;97826;97827 97823 19 HFDNQPIDLPLDVLLGK Unmodified 1933.0309 0.030912783 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.558 53.128 3 1.9773E-09 26367 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.29 128.8 277150000 59241000 71849000 59642000 0 0 0 9958800 0 8251400 0 0 0 10735000 11367000 8157200 0 0 0 12416000 14746000 10791000 0 0 0 8566 1107 8352 159128;159129;159130;159131;159132;159133;159134;159135;159136;159137;159138 97828;97829;97830 97828 3 HFDVDAFDAR Unmodified 1191.5309 0.530886 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.474 26.327 2;3 2.3622E-07 11451 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 177.91 172.17 1000500000 101370000 99227000 98229000 0 0 0 121240000 108990000 103260000 0 0 0 73995000 73326000 73266000 0 0 0 47237000 52644000 47710000 0 0 0 8567 1333 8353 159139;159140;159141;159142;159143;159144;159145;159146;159147;159148;159149;159150;159151;159152;159153;159154;159155;159156;159157;159158;159159;159160;159161;159162 97831;97832;97833;97834;97835;97836;97837;97838;97839;97840;97841;97842;97843;97844;97845;97846;97847;97848;97849;97850;97851;97852;97853;97854 97851 24 HFDVQLLGGMVLNER Unmodified 1726.8825 0.88247441 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.342 45.948 2;3 3.4093E-07 22233 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 91.07 79.799 196040000 10851000 9910200 9103700 2657700 3604700 3854700 14461000 12764000 9538400 0 7909400 7451600 12633000 12176000 12518000 10131000 0 0 19419000 17094000 13855000 0 0 6108300 8568 1057 8354 159163;159164;159165;159166;159167;159168;159169;159170;159171;159172;159173;159174;159175;159176;159177;159178;159179;159180;159181 97855;97856;97857;97858;97859;97860;97861;97862;97863 97858 9 HFDYVETK Unmodified 1037.4818 0.48181054 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 13.791 14.686 2 5.9567E-07 4636 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 198.87 174.9 1506900000 66578000 0 0 0 0 379220 151830000 164500000 149950000 0 0 0 134260000 132740000 136520000 0 0 0 195860000 191000000 183240000 0 0 0 8569 1491 8355 159182;159183;159184;159185;159186;159187;159188;159189;159190;159191;159192 97864;97865;97866;97867;97868;97869;97870;97871;97872;97873 97869 10 HFEQFIESGCAK Unmodified 1451.6503 0.65034921 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 22.073 22.155 2;3 1.5963E-23 8979 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 240.41 238.57 362380000 102710000 77372000 79196000 861950 959840 0 5028000 8035700 0 0 0 0 14910000 14305000 13041000 0 0 0 15289000 15933000 14734000 0 0 0 8570 529 8356 159193;159194;159195;159196;159197;159198;159199;159200;159201;159202;159203;159204;159205;159206;159207;159208;159209;159210;159211;159212;159213;159214;159215 97874;97875;97876;97877;97878;97879;97880;97881;97882;97883;97884 97878 11 HFESTPDTPEIIATIHGEGYR Unmodified 2369.1288 0.12878893 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.698 33.093 3 3.5261E-28 15798 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.27 159.65 922440000 166020000 165720000 127570000 3430200 3771400 3712500 71949000 68260000 78508000 0 3022600 4257600 39757000 35745000 27061000 0 0 0 43197000 36808000 42515000 0 0 1134100 8571 546 8357 159216;159217;159218;159219;159220;159221;159222;159223;159224;159225;159226;159227;159228;159229;159230;159231;159232;159233 97885;97886;97887;97888;97889;97890;97891;97892;97893;97894;97895;97896 97891 9 HFGALACTLELGK Unmodified 1415.7231 0.72312022 1833 P76215 astE Succinylglutamate desuccinylase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 32.275 31.439 2 0.034125 14876 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 74.173 58.583 12960000 6877300 0 4674500 0 0 0 0 0 0 0 0 0 0 0 0 1407800 0 0 0 0 0 0 0 0 8572 1833 8358 159234;159235;159236 97897 97897 0 HFGMPEQQTSHWR Unmodified 1639.7314 0.73139349 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.659 18.154 3 1.114E-05 4968 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 87.001 84.761 39357000 0 0 0 4611000 3366600 3788000 5850700 0 3925900 0 0 0 0 0 0 457840 0 0 4880000 3006700 2741500 2728400 1435200 2564600 8573 1899 8359 159237;159238;159239;159240;159241;159242;159243;159244;159245;159246;159247;159248 97898;97899;97900;97901 97899 4 HFGPTQVLHNIDLNIAQGEVVVIIGPSGSGK Unmodified 3195.704 0.70404634 1053 P10346 glnQ Glutamine transport ATP-binding protein GlnQ yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.994 49.738 4 3.6894E-09 17944 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 92.23 90.417 134140000 13024000 0 9471500 4975100 5758900 4521700 28354000 30850000 0 0 0 0 6035400 6893900 7980700 0 0 0 8518000 7761100 0 0 0 0 8574 1053 8360 159249;159250;159251;159252;159253;159254;159255;159256;159257;159258;159259;159260 97902;97903;97904 97903 3 HFGVSNFTPAQFALLQSR Unmodified 2019.0326 0.032644118 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.18 44.69 3 2.3946E-14 22135 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 152.37 151.45 183690000 22312000 15243000 19356000 0 0 0 18582000 18008000 21093000 0 0 0 11815000 12800000 10043000 0 0 0 8734700 10753000 14950000 0 0 0 8575 1830 8361 159261;159262;159263;159264;159265;159266;159267;159268;159269;159270;159271;159272 97905;97906;97907;97908;97909;97910;97911;97912 97906 8 HFIDHEINSIQNFMSDDMK Unmodified 2320.0253 0.025251833 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 2 3 3 3 43.723 42.242 2;3;4 4.1649E-45 20724 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 295.37 294.48 649300000 145140000 102080000 106100000 0 0 0 22518000 20105000 21317000 0 0 0 39392000 31711000 31394000 0 0 0 42565000 43963000 43011000 0 0 0 8576 340 8362 159273;159274;159275;159276;159277;159278;159279;159280;159281;159282;159283;159284;159285;159286;159287;159288;159289;159290;159291;159292;159293;159294;159295;159296;159297;159298;159299;159300;159301;159302;159303;159304 97913;97914;97915;97916;97917;97918;97919;97920;97921;97922;97923;97924;97925;97926 97919 13 HFKPGDTVPEMYR Unmodified 1575.7504 0.7503976 1683 P64534 rcnB Nickel/cobalt homeostasis protein RcnB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 20.05 20.489 2;3 7.0826E-07 8329 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 134.08 131.13 869710000 80935000 83889000 64738000 0 0 0 85021000 70608000 75471000 0 0 0 67407000 63094000 62117000 0 0 0 81935000 65687000 68811000 0 0 0 8577 1683 8363 159305;159306;159307;159308;159309;159310;159311;159312;159313;159314;159315;159316;159317;159318;159319;159320;159321;159322;159323;159324;159325;159326 97927;97928;97929;97930;97931;97932;97933;97934;97935;97936;97937;97938;97939;97940;97941;97942;97943;97944 97928 17 HFLALEAENNLPYPQLPAEAR Unmodified 2392.2175 0.21754435 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 46.097 44.495 3 1.1989E-21 22157 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 161.35 154.24 518860000 0 0 3720300 0 0 0 65127000 54560000 61753000 1796100 0 0 63036000 67646000 64031000 0 0 0 43591000 46061000 47536000 0 0 0 8578 1467 8364 159327;159328;159329;159330;159331;159332;159333;159334;159335;159336;159337 97945;97946;97947;97948;97949;97950;97951;97952;97953 97945 8 HFLMIKPVATLDDILHR Unmodified 2018.1135 0.11353698 799 P0ADQ2 yiiD Uncharacterized protein YiiD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.774 42.259 4 9.4583E-09 20719 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.17 107.82 92012000 16092000 13547000 8659300 0 0 0 6741900 5574000 7982300 0 0 0 4506400 3548600 3878900 0 0 0 7870500 6757800 6853000 0 0 0 8579 799 8365 159338;159339;159340;159341;159342;159343;159344;159345;159346;159347;159348;159349 97954;97955;97956;97957;97958 97956 3 HFMNASGGGVTASGGEAILQAEFVR Unmodified 2505.2071 0.20705602 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.051 40.353 3 9.038E-07 18862 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.839 94.915 364120000 23073000 21313000 24263000 0 0 0 42587000 31924000 31935000 0 0 0 37854000 26672000 32165000 0 0 0 36041000 27885000 28408000 0 0 0 8580 540 8366 159350;159351;159352;159353;159354;159355;159356;159357;159358;159359;159360;159361 97959;97960;97961;97962;97963;97964;97965;97966;97967 97967 2 HFNAEHQHTR Unmodified 1275.5857 0.58571553 447 P0A8N0 matP Macrodomain Ter protein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.67 15.099 2;3 0.0045224 1040 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 75.294 66.431 459230000 0 0 0 80301000 68211000 58864000 2951300 2310200 2828500 0 39700000 65458000 0 0 0 0 0 0 0 0 0 49768000 39255000 49583000 8581 447 8367 159362;159363;159364;159365;159366;159367;159368;159369;159370;159371;159372 97968;97969;97970;97971 97968 1 HFQELGVTGLEWHFIGPLQSNK Unmodified 2536.2863 0.28629262 1709 P67080 yggS UPF0001 protein YggS yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 47.631 46.203 3 0.015892 23044 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 42.172 39.41 72359000 0 0 4032800 0 0 0 12710000 12111000 0 0 0 0 7237800 6343100 0 0 0 0 11114000 9293600 9516500 0 0 0 8582 1709 8368 159373;159374;159375;159376;159377;159378;159379;159380 97972 97972 1 HFQNLSETLIAPLDADR Unmodified 1938.9799 0.97993985 1125 P16685 phnG Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 42.258 40.642 3 0.14433 19948 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 20.425 10.895 19916000 0 0 0 0 0 0 0 0 0 0 0 0 2681500 0 0 0 0 0 5204900 5162000 6867500 0 0 0 8583 1125 8369 159381;159382;159383;159384 97973 97973 0 HFQTAVK Unmodified 829.44464 0.44463717 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.66 11.475 2 0.00098249 2800 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 139.68 88.713 1987300000 134210000 126000000 100540000 0 0 0 215970000 174970000 168060000 0 0 0 148930000 133080000 152010000 0 0 0 271650000 110330000 251580000 0 0 0 8584 29 8370 159385;159386;159387;159388;159389;159390;159391;159392;159393;159394;159395;159396 97974;97975;97976;97977;97978;97979;97980 97977 6 HFSTTPAEK Unmodified 1016.4927 0.49270958 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.765 11.596 2 1.4289E-05 2675 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 160.88 130.69 4453700000 509760000 445890000 487500000 532950 0 0 560230000 535050000 514350000 0 0 0 219540000 222790000 202370000 0 0 0 253810000 252810000 249100000 0 0 0 8585 277 8371 159397;159398;159399;159400;159401;159402;159403;159404;159405;159406;159407;159408;159409 97981;97982;97983;97984 97984 3 HFSVNQMINK Unmodified 1216.6023 0.6022768 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 20.18 20.572 2;3 3.3422E-12 8063 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 207.29 196.58 1883700000 193930000 186980000 155240000 0 631580 0 102280000 139020000 125580000 0 0 0 162910000 140820000 142170000 0 0 0 185740000 177680000 170700000 0 0 0 8586 1024 8372 159410;159411;159412;159413;159414;159415;159416;159417;159418;159419;159420;159421;159422;159423;159424;159425;159426;159427;159428;159429;159430;159431;159432;159433;159434 97985;97986;97987;97988;97989;97990;97991;97992;97993;97994;97995 97990 10 HFTDEPISEAQR Unmodified 1428.6634 0.66335673 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 15.836 16.652 2;3 5.0228E-17 5391 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 215.93 195.06 1405600000 135740000 152400000 130350000 0 0 0 115330000 120050000 105360000 0 0 0 107630000 91751000 82619000 0 0 0 130780000 117750000 115830000 0 0 0 8587 1136 8373 159435;159436;159437;159438;159439;159440;159441;159442;159443;159444;159445;159446;159447;159448;159449;159450;159451;159452;159453;159454;159455;159456;159457;159458 97996;97997;97998;97999;98000;98001;98002;98003;98004;98005;98006;98007;98008;98009;98010;98011 98010 16 HFYDALQGAR Unmodified 1176.5676 0.56760585 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 22.755 22.222 2 4.5777E-05 9294 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.9 132.92 168240000 48406000 45715000 55674000 0 0 0 3508500 3622500 0 0 0 0 3907800 0 0 0 0 0 0 3946900 3461400 0 0 0 8588 49 8374 159459;159460;159461;159462;159463;159464;159465;159466 98012;98013;98014 98014 3 HFYDFFGENVFR Unmodified 1576.7099 0.709913 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 49.685 48.283 3 5.6788E-07 23367 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 113.69 108.15 48417000 3004800 4432800 0 0 0 0 4578600 3843600 2880600 0 0 0 4665500 5527500 5160800 0 0 0 4845600 6207900 3269300 0 0 0 8589 1171 8375 159467;159468;159469;159470;159471;159472;159473;159474;159475;159476;159477;159478 98015;98016;98017 98016 3 HGACFGFDPDAYFGTMVR Unmodified 2046.8717 0.87165172 1175 P21338 rna Ribonuclease I yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.4 48.078 3 0.08406 23353 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 36.637 36.637 50227000 11259000 9411300 12144000 0 0 0 3387300 0 0 0 0 0 3046900 2640700 0 0 0 0 0 3781100 4556800 0 0 0 8590 1175 8376 159479;159480;159481;159482;159483;159484;159485;159486 98018 98018 0 HGANLILLDISPEIEK Unmodified 1760.9672 0.96724989 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 45.406 43.96 2;3 1.0816E-23 21403 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 246.86 236.67 681990000 54035000 20297000 49657000 0 0 0 73484000 74767000 62211000 0 0 0 51511000 50674000 46819000 0 0 0 64438000 76250000 57843000 0 0 0 8591 1471 8377 159487;159488;159489;159490;159491;159492;159493;159494;159495;159496;159497;159498;159499;159500;159501;159502;159503;159504;159505;159506;159507;159508;159509 98019;98020;98021;98022;98023;98024;98025;98026;98027;98028;98029;98030;98031;98032;98033;98034;98035;98036;98037 98028 19 HGASCPVGMGVSCSADR Unmodified 1746.7236 0.72360728 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 1 1 14.612 15.28 2;3 8.0906E-32 5105 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 288.52 288.52 2171800000 285600000 237720000 239770000 3755800 4681300 4292000 172020000 158450000 159400000 4087900 2494700 2835700 161300000 145230000 162440000 0 1437200 0 149570000 129370000 142190000 2754700 2382600 0 8592 696;1097 8378 159510;159511;159512;159513;159514;159515;159516;159517;159518;159519;159520;159521;159522;159523;159524;159525;159526;159527;159528;159529;159530;159531;159532;159533;159534;159535;159536;159537;159538;159539;159540;159541;159542;159543;159544;159545;159546 98038;98039;98040;98041;98042;98043;98044;98045;98046;98047;98048;98049;98050;98051;98052;98053;98054;98055;98056;98057;98058;98059;98060;98061;98062;98063;98064;98065;98066;98067;98068;98069;98070;98071;98072;98073 98059 36 HGASDAPLR Unmodified 922.46208 0.46207815 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.575 11.391 2 2.1536E-11 2684 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 215.09 186.67 2243900000 258160000 240110000 173250000 0 0 0 240380000 186420000 201930000 0 0 0 151600000 154420000 146070000 0 0 0 173470000 158610000 159440000 0 0 0 8593 94 8379 159547;159548;159549;159550;159551;159552;159553;159554;159555;159556;159557;159558 98074;98075;98076;98077;98078;98079;98080;98081;98082 98078 9 HGAVSVMQYR Unmodified 1146.5604 0.56041199 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 2 1 1 1 1 14.648 15.429 2 3.1307E-23 5127 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 256.36 240.16 2740100000 168050000 162000000 134280000 0 0 0 278830000 264500000 261240000 0 0 0 237170000 212300000 196410000 0 0 0 268610000 261800000 294910000 0 0 0 8594 92 8380 159559;159560;159561;159562;159563;159564;159565;159566;159567;159568;159569;159570;159571;159572 98083;98084;98085;98086;98087;98088;98089;98090;98091;98092;98093 98085 11 HGAVSVMQYR Oxidation (M) 1162.5553 0.55532661 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 11.809 12.628 2 0.0006999 3534 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.815 92.702 57120000 0 0 3964000 0 0 0 0 13468000 8398400 0 0 0 0 0 0 0 0 0 12373000 10016000 8901000 0 0 0 8595 92 8380 159573;159574;159575;159576;159577;159578 98094 98094 35 1 HGCALGSIVGK Unmodified 1097.5652 0.56516301 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.19 17.041 2 1.1323E-07 6082 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.23 145.63 356070000 24306000 18973000 8456600 0 595990 0 42830000 40700000 50500000 0 0 0 19710000 19241000 18237000 0 0 0 41807000 37030000 33689000 0 0 0 8596 656 8381 159579;159580;159581;159582;159583;159584;159585;159586;159587;159588;159589;159590;159591 98095;98096;98097;98098;98099;98100;98101;98102;98103 98096 9 HGCALGSIVGKDESVEVPSVGGRPPR Unmodified 2659.35 0.35003187 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.764 25.587 4 8.8577E-07 9551 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 89.511 89.009 167170000 0 13014000 0 0 7868600 0 21967000 18074000 0 18656000 9992900 8924200 12575000 0 8804200 5414500 3415700 3118700 14845000 0 0 8813400 6743900 4944100 8597 656 8382 159592;159593;159594;159595;159596;159597;159598;159599;159600;159601;159602;159603;159604;159605;159606;159607 98104;98105;98106 98105 2 HGDFTIK Unmodified 816.413 0.41300269 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.637 13.28 2 0.0055591 3228 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 99.139 84.119 3333700000 350180000 0 1700600 0 0 0 376930000 357640000 366060000 0 0 0 347720000 324720000 388220000 11751000 9028000 14251000 413210000 0 372310000 0 0 0 8598 793 8383 159608;159609;159610;159611;159612;159613;159614;159615;159616;159617;159618;159619;159620 98107;98108;98109;98110;98111;98112;98113;98114;98115;98116;98117 98107 11 HGDNPLNGYSICAFPDAADK Unmodified 2160.9535 0.9534671 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 1 1 38.02 36.305 2;3 1.5787E-46 17672 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 321.02 319.21 578820000 177340000 141000000 120580000 0 0 0 34703000 34494000 35202000 0 0 0 4644100 3183200 5396300 0 0 0 7528200 8119000 6628600 0 0 0 8599 1373 8384 159621;159622;159623;159624;159625;159626;159627;159628;159629;159630;159631;159632;159633;159634;159635;159636;159637;159638 98118;98119;98120;98121;98122;98123;98124;98125;98126 98122 9 HGDSSGVR Unmodified 813.37293 0.37292879 1231 P23917 mak Fructokinase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 4.9569 5.82 2 0.0097902 784 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 79.469 79.469 218920000 34841000 42644000 35069000 51473 0 0 0 0 0 0 0 0 13689000 15731000 15205000 0 0 0 22503000 18528000 20655000 0 0 0 8600 1231 8385 159639;159640;159641;159642;159643;159644;159645;159646;159647;159648 98127;98128;98129 98129 3 HGEALLK Unmodified 766.43374 0.43373813 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.479 12.299 2 0.0031978 3234 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 108.98 56.752 187050000 62162000 49634000 41025000 0 0 0 8205500 5832900 7177100 0 0 0 5353800 4032200 3624900 0 0 0 0 0 0 0 0 0 8601 1541 8386 159649;159650;159651;159652;159653;159654;159655;159656;159657 98130;98131;98132 98132 3 HGEPDLLLLSYHGIPQR Unmodified 1944.0217 0.02174508 1223 P23871 hemH Ferrochelatase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 38.005 35.898 3 4.0789E-07 14581 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 79.652 78.142 20178000 0 0 0 1288800 1092200 1407300 0 0 0 4183500 4129900 3221300 0 0 0 0 0 0 0 0 0 1528000 2104200 1222500 8602 1223 8387 159658;159659;159660;159661;159662;159663;159664;159665;159666 98133;98134;98135;98136;98137 98133 1 HGESQWNK Unmodified 984.44134 0.44134271 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.4478 9.3082 2 2.4001E-09 2423 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 214.69 201.73 7080600000 1497100000 1433200000 1284800000 0 796950 635600 251340000 194720000 191470000 0 0 0 150460000 160810000 139070000 0 0 0 564520000 567230000 644460000 0 0 0 8603 1652 8388 159667;159668;159669;159670;159671;159672;159673;159674;159675;159676;159677;159678;159679;159680 98138;98139;98140;98141;98142;98143;98144;98145;98146;98147;98148;98149;98150;98151;98152;98153 98148 16 HGESQWNKENR Unmodified 1383.628 0.62797428 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 1 By MS/MS By MS/MS 1 1 4.9826 6.0613 3 0.0014028 992 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 54.259 54.259 5074200 0 0 0 0 2187000 2887200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8604 1652 8389 159681;159682 98154;98155 98155 2 HGETQWNAER Unmodified 1226.5428 0.54284767 322 P0A7A2 gpmB Probable phosphoglycerate mutase GpmB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.524 12.357 2 3.4961E-31 3356 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 276.13 243.24 187170000 18106000 13773000 10665000 0 0 0 13566000 18734000 14476000 0 0 0 11417000 13530000 11121000 0 0 0 21311000 20843000 19629000 0 0 0 8605 322 8390 159683;159684;159685;159686;159687;159688;159689;159690;159691;159692;159693;159694 98156 98156 1 HGEWQEASLAFR Unmodified 1429.6739 0.67386184 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.554 28.205 3 0.00075509 13172 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 68.515 67.097 103840000 3573800 2656900 4722500 1907400 1448300 2037200 13537000 12036000 12617000 2004300 3358700 0 6463200 4957800 4740200 1236800 0 0 8554600 8077300 9907900 0 0 0 8606 717 8391 159695;159696;159697;159698;159699;159700;159701;159702;159703;159704;159705;159706;159707;159708;159709;159710;159711;159712;159713 98157;98158;98159 98159 3 HGFLPLK Unmodified 810.47521 0.47520902 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 20.507 20.869 2 0.0045348 6002 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 103.41 103.41 218440000 21304000 23941000 20624000 3095500 4354200 3672300 14311000 11335000 13701000 0 0 0 14304000 12898000 12181000 0 0 0 15090000 18302000 25362000 0 1816900 2146800 8607 1183 8392 159714;159715;159716;159717;159718;159719;159720;159721;159722;159723;159724;159725;159726;159727;159728;159729;159730;159731 98160;98161;98162;98163;98164;98165;98166;98167;98168;98169;98170;98171;98172;98173;98174 98168 14 HGGANEVSLEIQQR Unmodified 1536.7645 0.76446776 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 17.937 18.577 2;3 1.5322E-70 6813 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 339.5 326.49 183450000 57745000 62396000 60029000 0 1077800 1173800 0 0 0 0 0 0 0 0 0 0 0 0 0 1029900 0 0 0 0 8608 1374 8393 159732;159733;159734;159735;159736;159737;159738;159739;159740 98175;98176;98177;98178;98179 98178 5 HGGFYLGSIGGPAAVLAQGSIK Unmodified 2099.1164 0.11637375 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 1 1 46.414 44.877 2;3 2.9533E-75 21731 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 309.88 304.88 1233800000 199640000 191800000 165780000 3649500 3063400 3309100 53916000 47722000 47889000 0 2624200 0 63656000 54868000 70142000 0 0 0 109510000 117850000 89878000 2894800 2564900 3066200 8609 696 8394 159741;159742;159743;159744;159745;159746;159747;159748;159749;159750;159751;159752;159753;159754;159755;159756;159757;159758;159759;159760;159761;159762;159763;159764;159765;159766;159767;159768;159769;159770;159771 98180;98181;98182;98183;98184;98185;98186;98187;98188;98189;98190;98191;98192;98193;98194;98195;98196;98197;98198;98199;98200;98201;98202;98203;98204;98205;98206 98200 27 HGGGAFSGK Unmodified 816.38785 0.38785057 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5.6329 6.5098 2 5.6523E-05 1372 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 147.34 130.63 736530000 0 0 0 0 0 0 2319200 1709600 1565400 0 0 0 123590000 117110000 109990000 0 0 0 142420000 124640000 113200000 0 0 0 8610 388 8395 159772;159773;159774;159775;159776;159777;159778;159779;159780 98207;98208;98209 98208 3 HGGGAFSGKDPSK Unmodified 1243.5945 0.59454889 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 10.178 10.775 2;3 1.1769E-08 2394 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 166.86 154.63 253010000 28907000 27797000 3331400 0 0 0 0 0 0 38041000 26730000 24422000 3819600 3823700 0 0 0 1562800 32761000 28225000 33588000 0 0 0 8611 388 8396 159781;159782;159783;159784;159785;159786;159787;159788;159789;159790;159791;159792;159793;159794;159795;159796;159797;159798;159799;159800;159801;159802 98210;98211;98212;98213;98214;98215;98216;98217;98218;98219;98220 98220 11 HGGGAFSGKDPSKVDR Unmodified 1613.791 0.79101686 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 10.899 11.399 3;4 2.4772E-08 2317 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 86.548 83.888 108490000 0 0 0 12504000 15545000 7708900 0 0 0 22977000 19690000 23940000 0 0 0 0 2229100 0 0 0 0 0 0 3894500 8612 388 8397 159803;159804;159805;159806;159807;159808;159809;159810;159811;159812;159813;159814;159815;159816 98221;98222;98223;98224;98225;98226;98227;98228;98229;98230;98231;98232 98224 12 HGGGGGGFGGGGFGSR Unmodified 1319.5755 0.57554478 17 CON__P35908 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 1 2 2 2 14.112 14.496 2;3 1.8914E-13 3756 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 164.48 164.48 244140000 0 0 0 18093000 14857000 15811000 0 0 0 21827000 18259000 14649000 0 0 0 10306000 6285400 6895500 3434900 0 0 39352000 38687000 35685000 + 8613 17 8398 159817;159818;159819;159820;159821;159822;159823;159824;159825;159826;159827;159828;159829;159830;159831;159832;159833;159834;159835;159836;159837;159838;159839 98233;98234;98235;98236;98237;98238;98239;98240;98241;98242;98243;98244;98245;98246;98247;98248;98249;98250;98251 98241 19 HGGLQMADQDVFVNVVGGVK Unmodified 2069.0364 0.036408866 1250 P24554 radA DNA repair protein RadA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 42.263 40.231 3 9.9353E-05 16443 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 69.148 65.544 26566000 8837300 4973100 0 0 758220 0 0 0 0 3124800 2618600 2486400 0 0 0 0 0 0 0 2703900 0 0 1063300 0 8614 1250 8399 159840;159841;159842;159843;159844;159845;159846;159847 98252 98252 1 HGGPEVLQAVEFTPADPAENEIQVENK Unmodified 2917.4094 0.40938046 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.372 40.673 3 1.7376E-22 20198 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.23 158.93 849240000 147110000 149530000 119110000 0 0 0 85124000 95873000 90490000 0 0 0 28675000 29117000 27033000 0 0 0 23816000 23778000 29582000 0 0 0 8615 1316 8400 159848;159849;159850;159851;159852;159853;159854;159855;159856;159857;159858;159859 98253;98254;98255;98256;98257;98258;98259;98260 98254 8 HGGQEVYHIHMHLLGGR Unmodified 1939.9588 0.95876767 725 P0ACE7 hinT HIT-like protein HinT yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 2 2 1 2 1 2 1 19.577 20.006 3;5 5.5439E-05 7913 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 79.805 74.262 109510000 9041200 6952800 5723400 0 0 0 31580000 12296000 8221400 0 0 0 12460000 0 0 0 0 0 4397500 14752000 4080200 0 0 0 8616 725 8401 159860;159861;159862;159863;159864;159865;159866;159867;159868;159869;159870;159871;159872;159873 98261;98262;98263 98262 3 HGHLQCLPKED Unmodified 1332.6245 0.62446881 296 P0A6Z6 nikR Nickel-responsive regulator yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 11.839 12.201 3 0.11581 2636 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 22.72 19.533 45066000 0 0 0 7605300 0 4397800 0 0 0 6331500 0 4995100 0 0 0 0 3759600 4918400 0 0 0 4139800 4462000 4456100 8617 296 8402 159874;159875;159876;159877;159878;159879;159880;159881;159882 98264 98264 1 HGHNEADEPSATQPLMYQK Unmodified 2151.9644 0.96436614 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 3 3 3 1 3 3 3 1 3 3 3 2 2 2 15.907 16.62 2;3;4 1.9018E-30 5737 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 272.97 265.31 2062500000 175110000 171630000 189350000 0 4374800 1017300 86417000 96658000 93483000 0 0 3770800 122880000 139750000 138880000 0 991800 0 273240000 240170000 269230000 19932000 15851000 19760000 8618 937 8403 159883;159884;159885;159886;159887;159888;159889;159890;159891;159892;159893;159894;159895;159896;159897;159898;159899;159900;159901;159902;159903;159904;159905;159906;159907;159908;159909;159910;159911;159912;159913;159914;159915;159916;159917;159918;159919;159920;159921;159922;159923;159924;159925;159926;159927;159928 98265;98266;98267;98268;98269;98270;98271;98272;98273;98274;98275;98276;98277;98278;98279;98280;98281;98282;98283;98284;98285;98286;98287;98288;98289;98290;98291;98292;98293;98294;98295;98296;98297;98298;98299;98300;98301 98277 37 HGHVYVALPPLYR Unmodified 1520.8252 0.82521752 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.668 27.238 3 0.059888 12565 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 36.447 33.585 78063000 10479000 0 6086000 0 0 0 7494700 7751500 9085600 0 1480500 1503900 5577600 0 5013400 0 0 0 8293900 8060800 7235900 0 0 0 8619 1164 8404 159929;159930;159931;159932;159933;159934;159935;159936;159937;159938;159939;159940 98302 98302 1 HGIAIAGTHGK Unmodified 1060.5778 0.57777661 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.691 11.482 3 0.00025904 2750 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 67.207 59.478 492850000 58945000 53306000 52283000 2004400 1770600 0 39908000 38064000 35685000 0 0 0 33382000 28596000 30190000 0 0 2209300 36033000 46166000 34310000 0 0 0 8620 1145 8405 159941;159942;159943;159944;159945;159946;159947;159948;159949;159950;159951;159952;159953;159954;159955 98303;98304;98305;98306;98307;98308;98309;98310;98311;98312;98313 98307 11 HGIETQCEK Unmodified 1100.4921 0.49205765 131 P06846 ebgR HTH-type transcriptional regulator EbgR yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 7.695 8.5715 2 0.00098547 1833 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.11 102.29 7277400 2370700 0 3214400 0 0 0 0 0 0 0 0 0 898120 794180 0 0 0 0 0 0 0 0 0 0 8621 131 8406 159956;159957;159958;159959 98314 98314 1 HGIPIDADYVFDVR Unmodified 1615.7995 0.79945628 410 P0A894 rapZ RNase adapter protein RapZ yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 2 2 1 1 1 2 1 1 41.656 39.992 2;3 0.010147 19675 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 40.941 35.471 104570000 34184000 32544000 9632700 0 0 0 4123900 0 5386800 0 0 0 11145000 3094500 0 0 0 0 4464000 0 0 0 0 0 8622 410 8407 159960;159961;159962;159963;159964;159965;159966;159967;159968;159969;159970 98315;98316;98317;98318 98315 0 HGIPVIGFGPGKEPEAHAPNEK Unmodified 2280.1651 0.16511485 1706 P65807 ygeY Uncharacterized protein YgeY yes yes 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 22.993 22.322 4 0.0034792 9723 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 52.541 44.182 52470000 10277000 0 11056000 0 0 0 10921000 11460000 8755000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8623 1706 8408 159971;159972;159973;159974;159975 98319 98319 1 HGISNLK Unmodified 767.42899 0.42898711 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 10.677 11.33 2 0.00093346 2643 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.98 36.734 4317600000 413200000 269950000 232220000 0 0 4520900 244080000 227070000 210440000 0 2467400 0 187030000 142680000 133720000 825400000 360120000 410430000 227390000 205260000 221630000 0 0 0 8624 1639 8409 159976;159977;159978;159979;159980;159981;159982;159983;159984;159985;159986;159987;159988;159989;159990;159991;159992;159993;159994;159995;159996 98320;98321;98322;98323;98324;98325;98326;98327;98328 98320 9 HGIVPTR Unmodified 778.44497 0.44497152 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.057 12.571 2 0.10689 3259 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 52.636 48.419 108590000 0 0 0 0 0 0 22326000 20648000 21480000 1625400 0 839420 3840800 4524600 5728600 11533000 7379300 8664300 0 0 0 0 0 0 8625 1318 8410 159997;159998;159999;160000;160001;160002;160003;160004;160005;160006;160007 98329 98329 1 HGLAPEEVLAFIHGK Unmodified 1616.8675 0.86747627 1922 P77625 yfbT Sugar phosphatase YfbT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.092 39.427 3 3.1423E-06 18381 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 99.531 99.335 373060000 37607000 37817000 30891000 0 0 0 34681000 36439000 37725000 0 0 0 21888000 22770000 22129000 0 0 0 31346000 30039000 29732000 0 0 0 8626 1922 8411 160008;160009;160010;160011;160012;160013;160014;160015;160016;160017;160018;160019 98330;98331;98332;98333;98334;98335;98336;98337;98338;98339;98340;98341 98340 11 HGLCNAETLSSQ Unmodified 1315.5827 0.58266357 848 P0AED5 uvrY Response regulator UvrY yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.282 16.932 2 1.0663E-11 5858 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 186.76 180.17 68092000 0 9202600 8977400 0 0 0 5639300 5543500 5020900 0 0 0 6062500 5012600 4319200 622140 664950 496900 6206400 5188300 5135200 0 0 0 8627 848 8412 160020;160021;160022;160023;160024;160025;160026;160027;160028;160029;160030;160031;160032;160033 98342 98342 1 HGLCSDLGFSDADR Unmodified 1548.6627 0.66270481 251 P0A6J1 cysC Adenylyl-sulfate kinase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.701 24.629 2 8.4354E-15 10991 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 196.88 196.88 85152000 6006800 7427800 4347300 0 0 0 7763700 6248000 8420600 0 0 0 8416600 4561100 4465200 0 0 0 10674000 9092900 7727400 0 0 0 8628 251 8413 160034;160035;160036;160037;160038;160039;160040;160041;160042;160043;160044;160045 98343;98344;98345;98346;98347;98348;98349 98347 7 HGLCSDLGFSDADRK Unmodified 1676.7577 0.75766782 251 P0A6J1 cysC Adenylyl-sulfate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.268 19.793 3 9.5529E-09 7497 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.81 136.04 363190000 22760000 20710000 18475000 1051000 774840 875590 39589000 28541000 28567000 0 0 0 18692000 20235000 19180000 0 0 0 53173000 44334000 46233000 0 0 0 8629 251 8414 160046;160047;160048;160049;160050;160051;160052;160053;160054;160055;160056;160057;160058;160059;160060 98350;98351;98352;98353;98354;98355;98356;98357;98358 98355 9 HGLDPAQMALAFVR Unmodified 1524.7871 0.78711746 556 P0A9T4 tas Protein tas yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 1 2 1 48.497 47.148 2;3 2.7233E-11 23239 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 167.83 162.35 673200000 36823000 32939000 33506000 0 0 0 83625000 87353000 76940000 0 0 0 58798000 48878000 48772000 0 0 0 52384000 68383000 44803000 0 0 0 8630 556 8415 160061;160062;160063;160064;160065;160066;160067;160068;160069;160070;160071;160072;160073;160074;160075;160076;160077;160078;160079 98359;98360;98361;98362;98363;98364;98365;98366;98367;98368;98369;98370;98371;98372;98373;98374;98375;98376;98377 98363 19 HGLGMSDQIENR Unmodified 1355.6252 0.62519709 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 15.713 16.517 2;3 1.3568E-30 5675 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 252.68 252.68 680300000 79812000 109140000 94717000 10408000 11764000 9611800 51083000 46989000 43823000 0 0 0 38214000 28742000 27855000 0 0 0 45286000 41327000 38738000 0 2790600 0 8631 235 8416 160080;160081;160082;160083;160084;160085;160086;160087;160088;160089;160090;160091;160092;160093;160094;160095;160096;160097;160098;160099;160100;160101;160102;160103;160104;160105;160106;160107;160108;160109;160110;160111 98378;98379;98380;98381;98382;98383;98384;98385;98386;98387;98388;98389;98390;98391;98392;98393;98394;98395;98396;98397;98398;98399;98400;98401;98402;98403;98404;98405;98406;98407 98400 30 HGLHEYLQTQVVYLQS Unmodified 1913.9636 0.9635615 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 3 1 2 1 1 1 2 1 2 1 2 36.43 34.882 2;3 1.6291E-30 16780 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 227.36 221.64 289910000 49808000 43286000 38048000 0 0 0 10798000 10402000 10431000 0 0 0 21034000 19460000 0 0 0 0 19780000 17111000 49755000 0 0 0 8632 1264 8417 160112;160113;160114;160115;160116;160117;160118;160119;160120;160121;160122;160123;160124;160125;160126;160127;160128 98408;98409;98410;98411;98412;98413;98414;98415;98416;98417;98418;98419 98413 11 HGLHTDASHR Unmodified 1129.5377 0.53770271 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 5.0071 5.8721 2;3 9.251E-41 1359 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 356.33 334.56 2156700000 180140000 202140000 195820000 249680 0 333950 164600000 151740000 117890000 0 0 0 185370000 167080000 158310000 0 0 0 215000000 182080000 235890000 0 0 0 8633 161 8418 160129;160130;160131;160132;160133;160134;160135;160136;160137;160138;160139;160140;160141;160142;160143;160144;160145;160146;160147;160148;160149;160150;160151;160152;160153;160154 98420;98421;98422;98423;98424;98425;98426;98427;98428;98429;98430;98431;98432;98433;98434;98435;98436;98437;98438;98439;98440;98441;98442;98443 98432 23 HGLHYVELR Unmodified 1122.5934 0.59342667 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 2 14.563 15.173 2;3 1.1629E-05 4990 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.53 156.35 2498400000 134010000 112080000 156960000 5515300 6557000 7529100 260170000 274830000 261630000 38233000 27414000 32134000 81389000 187830000 205140000 25106000 18005000 13690000 229470000 205470000 203350000 3574600 2837400 5466400 8634 1196 8419 160155;160156;160157;160158;160159;160160;160161;160162;160163;160164;160165;160166;160167;160168;160169;160170;160171;160172;160173;160174;160175;160176;160177;160178;160179;160180;160181;160182;160183;160184;160185;160186;160187;160188;160189;160190;160191;160192;160193;160194;160195;160196;160197;160198 98444;98445;98446;98447;98448;98449;98450;98451;98452;98453;98454;98455;98456;98457;98458;98459;98460;98461;98462;98463;98464;98465;98466;98467;98468;98469;98470;98471;98472;98473;98474;98475;98476;98477 98467 34 HGLQSILR Unmodified 922.53485 0.53484916 812 P0ADV5 yhbW Uncharacterized protein YhbW yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 17.339 18.013 2 1.0535E-06 6544 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 195.6 138.5 399330000 45078000 0 0 0 0 0 54284000 59078000 49699000 0 0 0 22920000 27291000 23826000 0 0 0 37062000 44067000 36025000 0 0 0 8635 812 8420 160199;160200;160201;160202;160203;160204;160205;160206;160207;160208 98478;98479;98480;98481;98482;98483;98484;98485 98482 8 HGMGFEGMR Unmodified 1020.427 0.42695497 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.913 16.729 2 2.5828E-08 5853 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 198.07 198.07 607840000 183890000 172520000 116820000 0 0 0 22699000 14878000 17762000 0 0 0 12112000 9455400 10029000 0 0 0 14872000 15499000 17308000 0 0 0 8636 26 8421 160209;160210;160211;160212;160213;160214;160215;160216;160217;160218;160219;160220 98486;98487;98488;98489;98490;98491;98492;98493 98491 8 HGNFALLTPDGLVK Unmodified 1480.8038 0.80381338 1764 P75713 allE (S)-ureidoglycine aminohydrolase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 36.971 35.532 3 0.011689 17252 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 44.968 39.791 18397000 5688700 7590500 5117800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8637 1764 8422 160221;160222;160223 98494 98494 1 HGNKGVISK Unmodified 938.52976 0.52976379 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 8.4605 8.8656 2 2.265E-05 1756 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 162.49 139.57 3831100000 0 0 0 2011100 2666800 2497100 1982400 0 0 174330000 139550000 144600000 0 0 0 1730400000 304550000 286080000 0 0 0 387910000 365340000 289160000 8638 463 8423 160224;160225;160226;160227;160228;160229;160230;160231;160232;160233;160234;160235;160236 98495;98496;98497;98498;98499;98500;98501;98502;98503;98504;98505 98499 10 HGNMLGAK Unmodified 826.41196 0.41195684 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.643 11.31 2 0.00064042 2646 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.39 129.39 1412500000 101540000 99569000 91917000 0 0 0 158130000 136860000 130390000 0 4452300 5407400 105760000 94518000 101610000 0 1956300 0 144090000 112750000 123510000 0 0 0 8639 59 8424 160237;160238;160239;160240;160241;160242;160243;160244;160245;160246;160247;160248;160249;160250;160251 98506;98507;98508;98509;98510;98511;98512;98513;98514;98515;98516 98511 11 HGNMLGAK Oxidation (M) 842.40687 0.40687146 59 P00957 alaS Alanine--tRNA ligase yes yes 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 4.8393 5.7299 2 0.069152 1078 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 53.554 50.665 85343000 0 0 0 0 0 0 25455000 23202000 21278000 0 0 0 0 3384600 4117700 0 0 0 4209000 0 3697400 0 0 0 8640 59 8424 160252;160253;160254;160255;160256;160257;160258 98517;98518 98517 0 HGNSHQGEPR Unmodified 1117.5013 0.5013172 13 CON__P13645 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 7.7204 8.0951 2;3 8.0674E-09 1457 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 198.72 195.46 371840000 0 0 0 6148800 6065300 8627300 0 0 0 25849000 23716000 20965000 0 0 0 8313300 29510000 9949700 0 0 0 76485000 76525000 79684000 + 8641 13 8425 160259;160260;160261;160262;160263;160264;160265;160266;160267;160268;160269;160270;160271;160272;160273;160274;160275;160276;160277;160278;160279;160280;160281;160282 98519;98520;98521;98522;98523;98524;98525;98526;98527;98528;98529;98530;98531;98532;98533;98534;98535;98536;98537;98538 98530 20 HGNTSAASVPCALDEAVR Unmodified 1853.869 0.86900919 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 24.646 23.618 2;3 2.0792E-55 10331 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 338.44 330.37 2621400000 242650000 216710000 175780000 0 0 779070 203970000 208170000 165880000 1248700 1590300 1144000 239970000 176820000 180630000 0 0 0 276260000 271700000 256880000 0 1225200 0 8642 273 8426 160283;160284;160285;160286;160287;160288;160289;160290;160291;160292;160293;160294;160295;160296;160297;160298;160299;160300;160301;160302;160303;160304;160305;160306;160307;160308;160309;160310;160311 98539;98540;98541;98542;98543;98544;98545;98546 98543 7 HGPAAIR Unmodified 720.40311 0.40310671 1626 P60651 speB Agmatinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.8215 9.638 2 0.00080065 2408 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 144.51 109.8 761240000 118110000 104610000 105620000 1064800 864910 0 41803000 28147000 29725000 0 0 0 36175000 34440000 26425000 0 0 0 54914000 69955000 90245000 0 11088000 8051900 8643 1626 8427 160312;160313;160314;160315;160316;160317;160318;160319;160320;160321;160322;160323;160324;160325;160326;160327 98547;98548;98549;98550;98551;98552;98553;98554;98555;98556 98552 9 HGPLALIDADMPVIVVAPNNELLEK Unmodified 2667.4306 0.4305736 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 53.998 52.562 2;3 2.0962E-97 25970 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 328.34 318.41 2956600000 229480000 225020000 217140000 0 1865300 0 227760000 246190000 248400000 0 0 0 259250000 227100000 236100000 0 0 0 296840000 251650000 289810000 0 0 0 8644 1137 8428 160328;160329;160330;160331;160332;160333;160334;160335;160336;160337;160338;160339;160340;160341;160342;160343;160344;160345;160346;160347;160348;160349;160350;160351;160352 98557;98558;98559;98560;98561;98562;98563;98564;98565;98566;98567;98568;98569;98570;98571;98572;98573;98574;98575;98576;98577;98578;98579;98580 98561 24 HGPYVVVDIK Unmodified 1125.6182 0.61824444 166 P07649 truA tRNA pseudouridine synthase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 22.888 22.403 2 0.015877 9603 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 63.419 40.927 46482000 4708200 6248500 6221600 0 0 0 5541000 0 0 0 0 0 4330600 3138900 3172500 0 0 0 0 7422400 5698200 0 0 0 8645 166 8429 160353;160354;160355;160356;160357;160358;160359;160360;160361 98581;98582 98581 0 HGQVVSVGK Unmodified 909.50321 0.50321468 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 3 2 1 2 1 2 2 2 2 3 2 1 2 3 2 10.472 11.297 2 1.0687E-07 2567 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 182.29 156.67 8911200000 707990000 700290000 626530000 1971900 3245600 2929400 1243200000 1074600000 1071100000 0 0 0 520470000 526630000 552620000 0 4274300 0 615520000 630480000 629340000 0 0 0 8646 256 8430 160362;160363;160364;160365;160366;160367;160368;160369;160370;160371;160372;160373;160374;160375;160376;160377;160378;160379;160380;160381;160382;160383;160384;160385;160386;160387;160388;160389;160390;160391;160392;160393 98583;98584;98585;98586;98587;98588;98589;98590;98591;98592;98593;98594;98595 98595 9 HGREEISYPDVQWQHESLK Unmodified 2337.1138 0.11380756 1060 P10443 dnaE DNA polymerase III subunit alpha yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 25.437 24.246 3 0.16156 11072 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 8.8569 5.146 56273000 0 0 0 0 0 0 12106000 11034000 11920000 0 0 0 6091200 0 6905900 0 0 0 0 0 8215900 0 0 0 8647 1060 8431 160394;160395;160396;160397;160398;160399 98596 98596 1 HGSGIVCLCITEDR Unmodified 1615.7447 0.7446603 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 2 2 2 2 2 27.989 26.823 2;3 5.0634E-56 12661 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 304.57 304.57 729670000 27758000 27179000 24215000 0 0 0 93526000 90080000 94693000 0 0 0 66591000 47090000 44046000 0 0 0 74336000 65489000 74667000 0 0 0 8648 348 8432 160400;160401;160402;160403;160404;160405;160406;160407;160408;160409;160410;160411;160412;160413;160414;160415;160416;160417;160418;160419;160420;160421;160422;160423;160424 98597;98598;98599;98600;98601;98602;98603;98604;98605;98606;98607;98608;98609;98610;98611;98612;98613;98614;98615;98616;98617;98618 98597 21 HGSGLGHSSSHGQHGSGSGR Unmodified 1884.8324 0.83238118 23 CON__Q86YZ3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 8.9641 9.1717 3 3.1207E-18 1519 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 164.02 162.99 46538000 0 0 0 0 0 0 0 0 0 11916000 13199000 14365000 0 0 0 0 0 0 0 0 0 2804500 4253200 0 + 8649 23 8433 160425;160426;160427;160428;160429 98619;98620;98621;98622 98620 4 HGSGSGHSSSHGQHGSGSGR Unmodified 1858.7803 0.78034561 23 CON__Q86YZ3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 3 3 3 2 2 2 3 3 3 7.8767 8.0952 2;3;4 2.7568E-15 1262 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 154.26 154.02 53173000 0 0 0 0 0 0 0 0 0 15027000 14482000 12582000 0 0 0 429540 607600 294520 0 0 0 3426500 3429500 2894100 + 8650 23 8434 160430;160431;160432;160433;160434;160435;160436;160437;160438;160439;160440;160441;160442;160443;160444;160445;160446;160447;160448;160449;160450;160451;160452;160453 98623;98624;98625;98626;98627;98628;98629 98626 7 HGSGSGHSSSYGQHGSGSGWSSSSGR Unmodified 2476.0137 0.013652602 23 CON__Q86YZ3 yes no 0 0 0 By matching By MS/MS 1 1 10.781 10.911 3 2.4017E-19 2139 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 139.46 125.35 20584000 0 0 0 0 0 0 0 0 0 7995700 12588000 0 0 0 0 0 0 0 0 0 0 0 0 0 + 8651 23 8435 160454;160455 98630 98630 0 HGSGSGQSPGHGQR Unmodified 1347.6028 0.60282216 23 CON__Q86YZ3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 8.8364 9.0759 3 7.293E-06 1467 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 101.39 98.875 30960000 0 0 0 0 0 0 0 0 0 11330000 5010700 9546400 0 0 0 0 0 0 0 0 0 962300 2037400 2073200 + 8652 23 8436 160456;160457;160458;160459;160460;160461 98631;98632;98633 98632 3 HGSGSGQSSGFGHK Unmodified 1328.5858 0.58577511 23 CON__Q86YZ3 yes yes 0 0 0 By matching By MS/MS 1 1 10.133 10.288 3 0.11277 1806 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 33.751 31.238 8611100 0 0 0 0 0 0 0 0 0 4262800 0 4348300 0 0 0 0 0 0 0 0 0 0 0 0 + 8653 23 8437 160462;160463 98634 98634 0 HGSGSGQSSSYGPYGSGSGWSSSR Unmodified 2317.9584 0.95842913 23 CON__Q86YZ3 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 18.314 18.36 3 0.0019816 5532 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 58.418 58.418 9680500 0 0 0 0 0 0 0 0 0 0 2597400 2278100 0 0 0 0 0 0 0 0 0 1769000 1835000 1201100 + 8654 23 8438 160464;160465;160466;160467;160468 98635 98635 1 HGSGSGQSSSYSPYGSGSGWSSSR Unmodified 2347.969 0.96899382 23 CON__Q86YZ3 yes no 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 18.264 18.185 3 0.00013208 5500 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 76.198 76.198 17097000 0 0 0 0 0 0 0 0 0 4262700 6047900 4947700 0 0 0 0 0 0 0 0 0 0 1839000 0 + 8655 23 8439 160469;160470;160471;160472 98636 98636 1 HGSLALYVSSIQCDAMLEAQDIR Oxidation (M) 2592.2312 0.23122186 1989 yes yes 0 1 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 2 2 2 2 53.311 51.895 2 0.0075101 25409 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 56.139 50.928 372920000 37959000 35178000 81176000 0 0 0 9861300 14186000 11711000 0 0 0 16816000 32108000 39640000 0 0 0 31999000 35771000 26514000 0 0 0 + 8656 1989 8440 160473;160474;160475;160476;160477;160478;160479;160480;160481;160482;160483;160484;160485;160486;160487;160488;160489;160490 98637;98638;98639;98640;98641;98642 98638 616 6 HGSSSGSSSHYGQHGSGSR Unmodified 1857.7739 0.77386325 23 CON__Q86YZ3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 9.0087 9.1969 3;4 8.2169E-05 1528 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.184 72.184 21245000 0 0 0 0 0 0 0 0 0 6949400 7348700 5857800 0 0 0 0 0 0 0 0 0 539000 550290 0 + 8657 23 8441 160491;160492;160493;160494;160495;160496;160497;160498 98643;98644;98645;98646;98647;98648 98644 6 HGSSSGSSSSYGQHGSGSR Unmodified 1807.747 0.7469798 23 CON__Q86YZ3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 10.039 10.22 3;4 5.9742E-14 1750 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 135.08 134.67 52059000 0 0 0 0 0 0 0 0 0 18903000 10902000 9824900 0 0 0 641440 200370 0 0 0 0 4791400 3611800 3183700 + 8658 23 8442 160499;160500;160501;160502;160503;160504;160505;160506;160507;160508;160509;160510;160511;160512 98649;98650;98651;98652;98653;98654;98655 98649 7 HGTAADPEDAVR Unmodified 1237.5687 0.56872807 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 11.818 12.672 2;3 1.2692E-39 3440 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 282.13 245.8 358210000 6428200 0 22143000 0 0 0 36292000 38153000 35827000 0 0 0 38196000 26792000 28203000 0 0 0 41323000 45629000 39223000 0 0 0 8659 1421 8443 160513;160514;160515;160516;160517;160518;160519;160520;160521;160522;160523;160524;160525;160526;160527;160528;160529;160530;160531;160532;160533 98656;98657;98658;98659;98660;98661;98662;98663;98664;98665;98666;98667;98668 98657 13 HGTLLANGR Unmodified 937.50936 0.50936269 2 CON__ENSEMBL:ENSBTAP00000031900 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 15.841 15.886 2 0.00094945 5550 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 97.071 30.272 154170000 0 0 0 0 0 0 0 0 0 11976000 11012000 10715000 0 0 0 36974000 20894000 23651000 0 0 0 14492000 13276000 11182000 + 8660 2 8444 160534;160535;160536;160537;160538;160539;160540;160541;160542;160543;160544;160545;160546;160547;160548;160549;160550;160551 98669;98670;98671;98672;98673;98674;98675;98676;98677;98678;98679;98680;98681;98682;98683;98684;98685 98670 17 HGTQGEK Unmodified 755.35622 0.3562161 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.8139 2.6891 2 0.01041 284 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.833 74.402 12075000 0 0 0 0 0 0 0 0 0 0 0 0 587110 0 776230 0 0 0 3543300 3258700 3909400 0 0 0 8661 1218 8445 160552;160553;160554;160555;160556 98686;98687;98688 98687 3 HGVQELEIELQSQLSK Unmodified 1836.9581 0.95814177 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 41.161 39.363 2;3 2.0078E-61 15625 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 379.61 368.76 1028600000 0 0 0 9506100 8719600 9606800 0 0 0 276910000 273390000 230940000 0 0 0 2026200 5476000 5611500 0 0 0 70248000 72194000 63940000 + 8662 16 8446 160557;160558;160559;160560;160561;160562;160563;160564;160565;160566;160567;160568;160569;160570;160571;160572;160573;160574;160575;160576;160577 98689;98690;98691;98692;98693;98694;98695;98696;98697;98698;98699;98700;98701;98702;98703;98704;98705;98706;98707;98708 98696 20 HGVSDEHIVMR Unmodified 1278.6139 0.61390412 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 2 1 1 12.548 13.298 2;3 4.6212E-45 3969 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 314.39 311.64 2467100000 159780000 253040000 260720000 3550400 3242400 3281400 181110000 192380000 185200000 3543800 5325400 0 166340000 182570000 165230000 0 5914200 0 252510000 228190000 201470000 0 8205600 5500900 8663 1143 8447 160578;160579;160580;160581;160582;160583;160584;160585;160586;160587;160588;160589;160590;160591;160592;160593;160594;160595;160596;160597;160598;160599;160600;160601;160602;160603;160604;160605;160606;160607;160608;160609 98709;98710;98711;98712;98713;98714;98715;98716;98717;98718;98719;98720;98721;98722;98723;98724;98725;98726;98727 98720 19 HGVTMLTLGQYLQPSR Unmodified 1799.9352 0.93523826 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 41.369 39.516 2;3 2.1633E-49 19262 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 328.81 312.72 1524700000 106130000 106050000 95547000 45008000 38542000 39184000 91925000 95134000 93984000 7759300 6044900 6520200 95428000 94892000 20013000 0 0 0 142770000 136930000 133330000 59818000 54127000 55626000 8664 1628 8448 160610;160611;160612;160613;160614;160615;160616;160617;160618;160619;160620;160621;160622;160623;160624;160625;160626;160627;160628;160629;160630;160631;160632;160633;160634;160635;160636;160637;160638;160639;160640;160641;160642;160643;160644;160645;160646;160647;160648;160649 98728;98729;98730;98731;98732;98733;98734;98735;98736;98737;98738;98739;98740;98741;98742;98743;98744;98745;98746;98747;98748;98749;98750;98751;98752 98739 25 HGYAFNELDLGK Unmodified 1362.6568 0.65681479 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 29.828 28.597 2;3 4.4726E-17 12805 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 217.02 192.5 4441400000 460610000 477000000 450170000 0 0 0 303600000 329950000 334520000 0 0 1335300 273900000 252920000 280260000 6652600 3942300 5156300 495980000 405300000 360030000 0 0 0 8665 793 8449 160650;160651;160652;160653;160654;160655;160656;160657;160658;160659;160660;160661;160662;160663;160664;160665;160666;160667;160668;160669;160670;160671;160672;160673;160674;160675;160676;160677 98753;98754;98755;98756;98757;98758;98759;98760;98761;98762;98763;98764;98765;98766;98767;98768;98769;98770;98771;98772;98773;98774;98775;98776;98777;98778;98779;98780;98781 98776 23 HGYAFNELDLGKR Unmodified 1518.7579 0.75792582 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 2 1 2 2 2 1 2 1 1 1 1 1 1 1 23.965 23.15 2;3 2.4712E-06 6981 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 127.56 124.8 378730000 8553100 7822200 10078000 0 450660 0 46723000 44075000 40456000 0 0 0 23485000 24633000 32101000 8585400 8067600 8392600 38260000 36084000 40965000 0 0 0 8666 793 8450 160678;160679;160680;160681;160682;160683;160684;160685;160686;160687;160688;160689;160690;160691;160692;160693;160694;160695;160696;160697;160698 98782;98783 98782 2 HGYAFNELDLGKREPVTEEEK Unmodified 2460.1921 0.19211746 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 2 By matching By MS/MS By MS/MS 1 1 1 23.513 23.501 4 1.6918E-05 7246 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 86.96 83.562 21705000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6189800 8623900 6891200 0 0 0 0 0 0 8667 793 8451 160699;160700;160701 98784;98785 98785 2 HHAYDVGSFLDNYGIAVR Unmodified 2032.9755 0.97552317 1906 P77444 sufS Cysteine desulfurase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 1 2 2 2 2 2 2 2 1 1 2 1 2 41.492 39.767 3;4 4.7982E-05 19450 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.346 75.852 179770000 25422000 23544000 13603000 4400700 4644900 5208300 19685000 24234000 15533000 0 0 0 6605000 3562200 2382200 0 0 0 7846800 10062000 13034000 0 0 0 8668 1906 8452 160702;160703;160704;160705;160706;160707;160708;160709;160710;160711;160712;160713;160714;160715;160716;160717;160718;160719;160720;160721;160722;160723;160724;160725;160726;160727 98786;98787;98788;98789 98788 3 HHDVPADDDETQALLR Unmodified 1830.8497 0.84965395 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 3 3 3 19.994 19.98 2;3;4 2.4527E-11 5677 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 155.98 151.71 100710000 0 0 0 0 0 0 0 0 0 0 5933300 4244500 0 4100400 0 10428000 9074700 8126300 0 0 0 20960000 18852000 18995000 8669 1448 8453 160728;160729;160730;160731;160732;160733;160734;160735;160736;160737;160738;160739;160740;160741;160742 98790;98791;98792;98793;98794;98795;98796;98797;98798;98799 98792 10 HHDVPADDDETQALLRR Unmodified 1986.9508 0.95076498 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 17.378 17.423 3;4 6.1133E-07 4660 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 104.41 100.92 37193000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10085000 8768500 8743800 0 0 0 3725300 3376800 2493400 8670 1448 8454 160743;160744;160745;160746;160747;160748;160749;160750;160751 98800;98801;98802;98803;98804;98805 98801 6 HHEYLYHVMDAPEIPDAEYDR Unmodified 2599.1438 0.14378706 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 1 1 2 1 1 1 1 2 2 2 33.175 31.907 3;4 0.00011074 10496 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 71.742 70.558 230150000 13464000 9282400 7979800 0 0 0 23570000 26380000 20137000 0 0 0 12152000 13331000 8980700 7337000 7140200 6050600 20222000 26651000 27473000 0 0 0 8671 1102 8455 160752;160753;160754;160755;160756;160757;160758;160759;160760;160761;160762;160763;160764;160765;160766;160767;160768;160769;160770;160771;160772 98806;98807;98808;98809 98806 3 HHFENVSIE Unmodified 1110.5094 0.50942227 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 1 1 1 1 1 16.697 17.417 2;3 0.00029772 6170 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.05 118.05 3132200000 904270000 1182300000 779330000 0 0 0 39705000 40501000 35913000 0 0 0 12429000 15169000 13662000 0 0 0 36449000 33962000 38512000 0 0 0 8672 1219 8456 160773;160774;160775;160776;160777;160778;160779;160780;160781;160782;160783;160784;160785;160786;160787;160788;160789 98810;98811;98812;98813;98814;98815;98816;98817;98818;98819;98820;98821;98822;98823;98824;98825 98816 16 HHFEVDASYVVVAALGELAK Unmodified 2154.111 0.11095402 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 4 4 7 8 6 4 5 5 4 3 5 7 8 6 6 7 6 6 8 6 6 8 6 54.158 52.941 2;3;4 5.3224E-56 19192 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 343.62 326.96 33802000000 157480000 141560000 102350000 5196100000 5375900000 5966100000 286400000 272810000 270340000 321860000 227200000 210070000 151830000 167650000 154700000 68606000 97313000 148210000 234660000 363610000 253130000 4611100000 4428400000 4595100000 8673 939 8457 160790;160791;160792;160793;160794;160795;160796;160797;160798;160799;160800;160801;160802;160803;160804;160805;160806;160807;160808;160809;160810;160811;160812;160813;160814;160815;160816;160817;160818;160819;160820;160821;160822;160823;160824;160825;160826;160827;160828;160829;160830;160831;160832;160833;160834;160835;160836;160837;160838;160839;160840;160841;160842;160843;160844;160845;160846;160847;160848;160849;160850;160851;160852;160853;160854;160855;160856;160857;160858;160859;160860;160861;160862;160863;160864;160865;160866;160867;160868;160869;160870;160871;160872;160873;160874;160875;160876;160877;160878;160879;160880;160881;160882;160883;160884;160885;160886;160887;160888;160889;160890;160891;160892;160893;160894;160895;160896;160897;160898;160899;160900;160901;160902;160903;160904;160905;160906;160907;160908;160909;160910;160911;160912;160913;160914;160915;160916;160917;160918;160919;160920;160921;160922;160923;160924;160925;160926;160927;160928;160929;160930;160931 98826;98827;98828;98829;98830;98831;98832;98833;98834;98835;98836;98837;98838;98839;98840;98841;98842;98843;98844;98845;98846;98847;98848;98849;98850;98851;98852;98853;98854;98855;98856;98857;98858;98859;98860;98861;98862;98863;98864;98865;98866;98867;98868;98869;98870;98871;98872;98873;98874;98875;98876;98877;98878;98879;98880;98881;98882;98883;98884;98885;98886;98887;98888;98889;98890;98891;98892;98893;98894;98895;98896;98897;98898;98899;98900;98901;98902;98903;98904;98905;98906;98907;98908;98909;98910;98911;98912;98913;98914;98915;98916;98917;98918;98919;98920;98921;98922;98923;98924;98925;98926;98927;98928;98929;98930;98931;98932;98933;98934;98935;98936;98937;98938;98939;98940;98941;98942;98943;98944;98945;98946;98947;98948;98949;98950;98951;98952 98927 119 HHFEVDASYVVVAALGELAKR Unmodified 2310.2121 0.21206505 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 3 1 2 2 2 51.438 50.125 3;4 2.7425E-15 19942 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 142.26 142.25 232820000 0 0 0 55217000 52494000 49818000 0 0 0 0 0 1257200 0 0 0 0 0 0 0 0 0 22046000 25817000 26166000 8674 939 8458 160932;160933;160934;160935;160936;160937;160938;160939;160940;160941;160942;160943;160944;160945 98953;98954;98955;98956;98957;98958;98959;98960 98953 8 HHGHGPAGVK Unmodified 995.50495 0.50494602 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 2 1 1 4.1717 5.0539 2 0.054058 726 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 48.561 40.89 17565000 0 0 0 0 0 0 1774000 1989300 0 0 0 0 379130 1853100 2228400 0 0 0 3701800 3792500 1846400 0 0 0 8675 134 8459 160946;160947;160948;160949;160950;160951;160952;160953;160954 98961;98962 98961 2 HHITADGYYR Unmodified 1231.5734 0.57341951 359 P0A7N4 rpmF 50S ribosomal protein L32 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 11.966 12.579 2;3 2.6525E-17 3459 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 241.52 241.21 4233200000 435290000 320340000 381240000 38785000 36199000 31153000 177080000 181120000 155890000 46810000 48346000 47691000 281560000 307980000 283340000 32804000 30230000 31775000 458390000 411320000 377250000 39834000 38479000 40253000 8676 359 8460 160955;160956;160957;160958;160959;160960;160961;160962;160963;160964;160965;160966;160967;160968;160969;160970;160971;160972;160973;160974;160975;160976;160977;160978;160979;160980;160981;160982;160983;160984;160985;160986;160987;160988;160989;160990;160991;160992;160993;160994;160995;160996;160997;160998;160999;161000;161001;161002;161003;161004;161005 98963;98964;98965;98966;98967;98968;98969;98970;98971;98972;98973;98974;98975;98976;98977;98978;98979;98980;98981;98982;98983;98984;98985;98986;98987;98988;98989;98990;98991;98992;98993;98994;98995;98996;98997;98998;98999;99000;99001;99002;99003;99004;99005;99006;99007;99008;99009 98987 45 HHKPAPDTFLLCAQR Unmodified 1789.9046 0.90460683 1908 P77475 yqaB Fructose-1-phosphate phosphatase YqaB yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 18.038 18.61 3 4.9188E-06 7029 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.812 78.711 51706000 3898900 0 0 0 0 0 9260500 6686000 9047400 0 0 0 0 4518600 2751800 0 0 0 5690300 3757600 6095000 0 0 0 8677 1908 8461 161006;161007;161008;161009;161010;161011;161012;161013;161014 99010;99011 99011 2 HHLDLAEGAEATVIEHFVSLNDAR Unmodified 2643.3041 0.30412753 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 47.22 45.78 4 4.3545E-10 22645 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.06 116.23 77195000 9692900 6636300 11321000 0 0 0 8801300 12231000 15736000 0 0 0 4370400 0 0 0 0 0 0 8406500 0 0 0 0 8678 1926 8462 161015;161016;161017;161018;161019;161020;161021;161022 99012 99012 1 HHLPVQR Unmodified 885.49332 0.4933187 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 10.289 11.003 2 0.0010076 2043 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 139.01 134.79 596730000 0 0 0 1207300 0 1047300 98171000 98365000 94313000 0 0 0 0 0 0 0 0 0 69724000 55783000 66395000 39388000 37674000 34665000 8679 1628 8463 161023;161024;161025;161026;161027;161028;161029;161030;161031;161032;161033 99013;99014;99015;99016 99016 4 HHMITGR Unmodified 850.42319 0.42319022 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 6.9936 7.8798 2 0.13862 1760 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.835 37.595 5118800 2900500 0 0 0 0 0 0 0 0 0 0 0 1569100 649190 0 0 0 0 0 0 0 0 0 0 8680 880 8464 161034;161035;161036 99017 99017 1 HHNEFHEQCVER Unmodified 1620.6852 0.68517158 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.545 11.361 4 0.00021807 2563 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 84.365 81.498 179990000 10596000 13549000 8285400 0 0 0 20867000 26236000 20675000 0 0 0 18103000 13623000 8447500 0 0 0 12371000 13541000 13697000 0 0 0 8681 1966 8465 161037;161038;161039;161040;161041;161042;161043;161044;161045;161046;161047;161048 99018;99019;99020;99021;99022;99023;99024 99023 7 HHNPQLHETLLTHLEQLQK Unmodified 2315.2135 0.21346203 99 P04982 rbsD D-ribose pyranase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 1 2 2 3 2 1 3 25.25 24.247 3;4;5 1.0592E-06 10518 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 91.401 90.074 340460000 18529000 28651000 21961000 0 0 0 29822000 28565000 11562000 0 0 0 44225000 27096000 46193000 0 0 0 24038000 7279100 52544000 0 0 0 8682 99 8466 161049;161050;161051;161052;161053;161054;161055;161056;161057;161058;161059;161060;161061;161062;161063;161064;161065;161066;161067;161068;161069;161070;161071;161072 99025;99026;99027;99028;99029;99030 99028 6 HHQTYVNNANAALESLPEFANLPVEELITK Unmodified 3361.6943 0.69426952 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 52.811 51.453 3;4 1.3432E-23 25457 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 174.1 172.22 6902400000 827860000 816150000 748310000 5385200 3708100 0 401820000 358580000 380750000 0 0 0 393010000 343550000 349760000 0 0 0 715450000 757820000 800260000 0 0 0 8683 28 8467 161073;161074;161075;161076;161077;161078;161079;161080;161081;161082;161083;161084;161085;161086;161087;161088;161089;161090;161091;161092;161093;161094;161095;161096;161097;161098 99031;99032;99033;99034;99035;99036;99037;99038;99039;99040;99041;99042;99043;99044;99045;99046;99047;99048;99049;99050;99051;99052;99053;99054 99033 24 HHQTYVTNLNNLIK Unmodified 1693.89 0.89000263 1008 P0AGD3 sodB Superoxide dismutase [Fe] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 1 24.248 23.297 2;3 3.0467E-35 10093 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 314.48 307.51 4542300000 487000000 404960000 458770000 2622100 2080900 2766300 585390000 607910000 546610000 1976800 0 3100000 290500000 197460000 162720000 0 0 0 236900000 276850000 273410000 0 0 1227500 8684 1008 8468 161099;161100;161101;161102;161103;161104;161105;161106;161107;161108;161109;161110;161111;161112;161113;161114;161115;161116;161117;161118;161119;161120;161121;161122;161123;161124;161125;161126;161127;161128;161129 99055;99056;99057;99058;99059;99060;99061;99062;99063;99064;99065;99066;99067;99068;99069;99070;99071;99072;99073;99074;99075;99076;99077;99078 99072 24 HHSLGEGNIGHDAFR Unmodified 1645.771 0.77095012 229 P0A6C1 nfo Endonuclease 4 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.051 13.727 4 0.0080101 3953 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 48.823 48.636 295880000 23966000 0 13675000 0 0 0 34242000 41555000 36411000 0 0 0 23196000 19374000 19675000 2556300 2967100 4908900 25787000 27948000 19618000 0 0 0 8685 229 8469 161130;161131;161132;161133;161134;161135;161136;161137;161138;161139;161140;161141;161142;161143 99079;99080;99081;99082;99083 99080 5 HHTFFEMLGNFSFGDYFK Unmodified 2222.9884 0.98839604 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.411 52.954 3 4.8299E-08 26171 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 109.04 109.04 191670000 9466600 11729000 0 0 0 0 18132000 18125000 17726000 0 0 0 17860000 23295000 14565000 0 0 0 21530000 19782000 19455000 0 0 0 8686 59 8470 161144;161145;161146;161147;161148;161149;161150;161151;161152;161153;161154 99084;99085;99086;99087;99088;99089 99084 0 HHVDVGQIR Unmodified 1059.5574 0.55737552 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.346 12.245 2 0.0012676 3190 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.296 71.448 243780000 19733000 27773000 24335000 530550 608170 781520 30115000 0 0 0 0 0 20746000 27721000 22481000 0 0 0 37465000 0 31494000 0 0 0 8687 1313 8471 161155;161156;161157;161158;161159;161160;161161;161162;161163;161164;161165;161166;161167 99090;99091;99092;99093 99091 4 HHVENADLLIVAVGK Unmodified 1613.8889 0.88893999 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 28.767 27.414 3 0.011943 12591 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 54.898 49.355 210170000 0 31549000 25813000 0 0 0 25618000 25764000 20706000 0 0 0 17129000 0 0 0 0 0 30409000 33176000 0 0 0 0 8688 1237 8472 161168;161169;161170;161171;161172;161173;161174;161175 99094 99094 0 HHVVLCVNPDGCQLGLR Unmodified 1972.9724 0.97236882 751 P0ACV6 mpaA Protein MpaA yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 27.521 26.438 3 0.016882 11821 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 34.612 31.118 10955000 0 5608200 3946200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1400500 0 8689 751 8473 161176;161177;161178 99095;99096 99096 0 HIAAPNETVSTMGFEAATR Unmodified 2001.9578 0.95782419 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 1 2 2 2 2 2 1 2 29.89 28.529 2;3 5.3623E-30 13317 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 251.87 246.59 1986100000 43343000 199790000 147820000 0 1304400 2952300 188390000 38902000 192190000 0 0 0 160750000 201730000 208920000 0 0 0 249810000 68839000 281380000 0 0 0 8690 273 8474 161179;161180;161181;161182;161183;161184;161185;161186;161187;161188;161189;161190;161191;161192;161193;161194;161195;161196;161197;161198;161199;161200;161201 99097;99098;99099;99100;99101;99102;99103;99104;99105;99106;99107;99108;99109;99110;99111;99112;99113;99114;99115;99116;99117 99107 21 HIAGGDLVKPIEVDGSNEMGQLAESLR Unmodified 2834.4233 0.42325639 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 44.292 42.812 3;4 6.0135E-11 15193 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 123.53 117.56 219060000 50373000 48853000 45148000 26348000 24433000 23908000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8691 76 8475 161202;161203;161204;161205;161206;161207;161208;161209;161210;161211;161212;161213 99118;99119;99120;99121;99122;99123;99124 99119 7 HIAHDFNDPLTWSHNR Unmodified 1958.9136 0.91359161 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 1 1 2 1 22.941 22.321 3;4 7.4007E-07 9852 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 104.09 103.6 1791200000 157300000 130900000 149030000 0 0 0 189610000 151120000 150940000 0 0 0 148260000 84949000 94643000 0 843640 0 153360000 220250000 159970000 0 0 0 8692 295 8476 161214;161215;161216;161217;161218;161219;161220;161221;161222;161223;161224;161225;161226;161227;161228;161229;161230;161231;161232;161233;161234 99125;99126;99127;99128;99129;99130;99131;99132;99133;99134;99135;99136;99137 99126 13 HIALVAHDHCK Unmodified 1299.6506 0.65062398 305 P0A731 mgsA Methylglyoxal synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 10.56 11.376 2;3 1.1931E-10 2640 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 196.88 193.02 1991700000 139680000 211020000 217290000 0 0 0 192440000 201900000 180450000 0 0 0 134160000 131360000 111440000 0 0 0 158700000 160400000 152800000 0 0 0 8693 305 8477 161235;161236;161237;161238;161239;161240;161241;161242;161243;161244;161245;161246;161247;161248;161249;161250;161251;161252;161253;161254;161255;161256;161257;161258 99138;99139;99140;99141;99142;99143;99144;99145;99146;99147;99148;99149;99150;99151;99152;99153;99154 99138 15 HIAMHVAASKPEFIKPEDVSAEVVEK Unmodified 2860.4793 0.4793147 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 5 4 3 2 4 5 4 2 1 3 4 4 1 1 5 6 4 1 28.212 26.978 3;4;5 5.8696E-51 11960 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 243.35 238.12 30329000000 2562600000 1979800000 1930400000 0 0 5278700 3134800000 2640600000 2445300000 11138000 17538000 0 2128700000 1643500000 1389800000 0 11700000 2268000 3474400000 3077200000 3869100000 0 4673900 0 8694 267 8478 161259;161260;161261;161262;161263;161264;161265;161266;161267;161268;161269;161270;161271;161272;161273;161274;161275;161276;161277;161278;161279;161280;161281;161282;161283;161284;161285;161286;161287;161288;161289;161290;161291;161292;161293;161294;161295;161296;161297;161298;161299;161300;161301;161302;161303;161304;161305;161306;161307;161308;161309;161310;161311;161312;161313;161314;161315;161316;161317 99155;99156;99157;99158;99159;99160;99161;99162;99163;99164;99165;99166;99167;99168;99169;99170;99171;99172;99173;99174;99175;99176;99177;99178;99179;99180;99181;99182;99183;99184;99185;99186;99187;99188;99189;99190;99191;99192;99193;99194;99195;99196;99197;99198;99199;99200;99201;99202;99203;99204;99205;99206;99207;99208;99209;99210;99211;99212;99213;99214;99215;99216;99217;99218;99219;99220;99221;99222;99223;99224;99225;99226;99227;99228;99229;99230;99231;99232;99233;99234;99235;99236;99237;99238;99239;99240;99241 99202 86 HIAMHVAASKPEFIKPEDVSAEVVEK Oxidation (M) 2876.4742 0.47422933 267 P0A6P1 tsf Elongation factor Ts yes yes 0 1 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 4 2 2 2 3 3 3 3 26.449 25.369 4;5 2.2881E-15 12079 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 136.44 134.03 1124400000 41257000 106540000 43621000 0 0 0 82896000 149030000 82300000 0 0 0 63515000 80825000 79072000 0 0 0 114840000 123440000 157030000 0 0 0 8695 267 8478 161318;161319;161320;161321;161322;161323;161324;161325;161326;161327;161328;161329;161330;161331;161332;161333;161334;161335;161336;161337;161338;161339;161340;161341;161342;161343;161344;161345;161346;161347 99242;99243;99244;99245;99246;99247;99248;99249;99250;99251;99252;99253;99254;99255;99256;99257;99258;99259;99260;99261;99262;99263;99264 99249 121 23 HIAMLEEMNK Oxidation (M) 1230.5737 0.57367879 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 1 1 2 1 2 2 1 2 2 1 1 15.089 15.869 2 0.00032418 5644 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 116.25 104.2 1294700000 313510000 298860000 252460000 459550 507850 302950 65451000 55928000 57309000 0 0 0 4369700 38907000 38607000 0 0 0 48917000 53620000 58565000 0 3238000 3714600 8696 993 8479 161348;161349;161350;161351;161352;161353;161354;161355;161356;161357;161358;161359;161360;161361;161362;161363;161364;161365;161366;161367;161368;161369;161370 99265;99266;99267;99268;99269;99270;99271;99272 99268 456 7 HIAMLEEMNK Unmodified 1214.5788 0.57876417 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 2 2 2 2 2 2 2 21.918 21.944 2;3 3.6898E-12 8379 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 205.36 199.7 4297800000 38804000 34087000 32410000 503510 0 0 292960000 279900000 273660000 0 0 0 392090000 386480000 382070000 0 0 0 739640000 744510000 700660000 0 0 0 8697 993 8479 161371;161372;161373;161374;161375;161376;161377;161378;161379;161380;161381;161382;161383;161384;161385;161386;161387;161388;161389;161390;161391;161392;161393 99273;99274;99275;99276;99277;99278;99279;99280;99281;99282;99283;99284;99285;99286;99287;99288;99289;99290;99291;99292;99293;99294;99295;99296;99297;99298;99299 99297 26 HIAMLEEMNKK Oxidation (M) 1358.6686 0.66864181 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 1 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 1 2 12.052 12.86 2;3 0.00011667 3706 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.22 104.11 353510000 0 0 0 0 0 0 77643000 18864000 76543000 0 0 0 0 0 0 0 0 0 86133000 20754000 73576000 0 0 0 8698 993 8480 161394;161395;161396;161397;161398;161399;161400;161401;161402;161403 99300;99301;99302;99303;99304;99305 99302 456 6 HIAMLEEMNKK Unmodified 1342.6737 0.67372718 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 2 2 2 2 2 2 1 1 1 2 2 1 16.276 17.008 2;3 3.9037E-06 5602 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 103.26 99.172 6513500000 200500000 195450000 55026000 0 1820300 1247600 646300000 601680000 667950000 0 0 0 198120000 201460000 552890000 0 853460 690210 856790000 1192700000 1138600000 0 0 1353300 8699 993 8480 161404;161405;161406;161407;161408;161409;161410;161411;161412;161413;161414;161415;161416;161417;161418;161419;161420;161421;161422;161423;161424;161425;161426;161427;161428;161429;161430 99306;99307;99308;99309;99310;99311;99312;99313;99314;99315;99316;99317;99318;99319;99320;99321;99322 99318 17 HICIAPGSR Unmodified 1009.5127 0.51273351 1134 P17109 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.539 13.371 2 0.15782 3889 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 41.575 37.438 120150000 8499100 12685000 11453000 0 0 0 12906000 10271000 9374200 0 0 0 9019200 7362900 6304800 0 0 0 10290000 10807000 11176000 0 0 0 8700 1134 8481 161431;161432;161433;161434;161435;161436;161437;161438;161439;161440;161441;161442 99323 99323 0 HIDGLLKPVGSLGK Unmodified 1432.8402 0.84019889 1438 P36562 cobT Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.062 24.073 3 0.038085 10747 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 42.317 39.608 80216000 9158500 7006300 7319700 0 0 0 11727000 5709600 6382300 0 0 0 6276500 4858500 4882400 0 0 0 4493300 6437200 5965200 0 0 0 8701 1438 8482 161443;161444;161445;161446;161447;161448;161449;161450;161451;161452;161453;161454 99324 99324 0 HIDQITTVLNQLK Unmodified 1521.8515 0.85149185 407 P0A884 thyA Thymidylate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 39.087 37.413 2;3 5.5875E-06 18014 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 115.92 110.46 685260000 57930000 41072000 55313000 0 0 0 39979000 39330000 42338000 0 0 0 67124000 51718000 43909000 0 0 0 80510000 76948000 89087000 0 0 0 8702 407 8483 161455;161456;161457;161458;161459;161460;161461;161462;161463;161464;161465;161466;161467;161468;161469;161470;161471;161472;161473;161474;161475;161476;161477;161478 99325;99326;99327;99328;99329;99330;99331;99332;99333;99334;99335;99336;99337;99338 99330 12 HIDSLTEEEENWR Unmodified 1656.738 0.73797824 322 P0A7A2 gpmB Probable phosphoglycerate mutase GpmB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.401 25.354 2 2.72E-17 11529 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 205.53 201.52 112170000 13167000 9560100 11394000 0 0 0 9146400 6743200 9357600 0 0 0 5655400 9539500 6572800 0 0 0 10360000 7911500 12760000 0 0 0 8703 322 8484 161479;161480;161481;161482;161483;161484;161485;161486;161487;161488;161489;161490 99339;99340;99341;99342;99343;99344;99345 99339 7 HIDSLTEEEENWRR Unmodified 1812.8391 0.83908927 322 P0A7A2 gpmB Probable phosphoglycerate mutase GpmB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 21.842 21.918 3 0.013284 8496 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 51.875 47.704 70976000 0 5381700 5982800 0 0 0 7042800 0 7323800 0 0 0 7332600 5996300 4387600 0 0 0 8680200 8599800 10249000 0 0 0 8704 322 8485 161491;161492;161493;161494;161495;161496;161497;161498;161499;161500 99346;99347;99348 99348 0 HIEELPQVMSDAFR Unmodified 1670.8086 0.80864076 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 2 1 2 39.421 37.933 2;3 9.8251E-07 18289 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.53 124.16 88308000 23145000 24559000 22274000 512940 0 0 0 0 0 0 0 0 0 4464000 3611300 0 0 0 0 0 9742500 0 0 0 8705 173 8486 161501;161502;161503;161504;161505;161506;161507;161508;161509;161510;161511;161512 99349;99350;99351;99352;99353;99354 99353 4 HIEIDLGDSGMR Unmodified 1341.6347 0.63469914 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.129 26.818 2;3 5.7742E-07 12099 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 117.14 108.73 503010000 47207000 38160000 36900000 1979700 1133300 904090 39536000 41733000 39698000 0 1216000 0 32477000 28000000 31466000 0 0 0 54763000 48464000 51718000 3323600 2373000 1956100 8706 1503 8487 161513;161514;161515;161516;161517;161518;161519;161520;161521;161522;161523;161524;161525;161526;161527;161528;161529;161530;161531 99355;99356;99357;99358;99359;99360;99361;99362;99363;99364 99363 9 HIEINGDNLHDYLGVQR Unmodified 1991.9813 0.98133683 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 30.512 29.126 3;4 1.7802E-14 9413 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 172.2 167.59 732150000 38120000 51570000 6640000 2900200 3207000 2657500 37545000 49550000 47173000 28176000 29082000 25383000 31770000 11239000 33544000 52293000 49110000 59239000 39893000 41706000 46451000 14211000 14577000 16112000 8707 536 8488 161532;161533;161534;161535;161536;161537;161538;161539;161540;161541;161542;161543;161544;161545;161546;161547;161548;161549;161550;161551;161552;161553;161554;161555;161556;161557;161558;161559;161560;161561;161562;161563;161564;161565;161566;161567;161568;161569;161570;161571;161572;161573;161574 99365;99366;99367;99368;99369;99370;99371;99372;99373;99374;99375;99376;99377;99378;99379;99380;99381;99382;99383;99384;99385 99368 21 HIEVIVR Unmodified 864.51814 0.51813647 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 5 5 4 1 1 1 8 5 7 1 1 3 6 5 17.77 17.92 2 8.9921E-06 5273 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 187.72 160.65 17766000000 318230000 238250000 165770000 8443700 0 0 254960000 259330000 288750000 1163700000 912040000 1024400000 240200000 187870000 185830000 2739600000 2853600000 3151100000 371460000 0 1145700 1308700000 1078900000 1013700000 8708 458 8489 161575;161576;161577;161578;161579;161580;161581;161582;161583;161584;161585;161586;161587;161588;161589;161590;161591;161592;161593;161594;161595;161596;161597;161598;161599;161600;161601;161602;161603;161604;161605;161606;161607;161608;161609;161610;161611;161612;161613;161614;161615;161616;161617;161618;161619;161620;161621;161622;161623;161624;161625;161626;161627;161628;161629;161630;161631;161632;161633;161634;161635 99386;99387;99388;99389;99390;99391;99392;99393;99394;99395;99396;99397;99398;99399;99400;99401;99402;99403;99404;99405;99406;99407;99408;99409;99410;99411;99412;99413;99414;99415;99416;99417;99418;99419;99420;99421;99422;99423;99424;99425;99426 99422 39 HIEYSLPHVAELALGGTAVGTGLNTHPEYAR Unmodified 3272.6578 0.65782443 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 2 2 2 2 2 1 2 2 2 43.209 41.676 4;5 1.1952E-33 20216 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 200.99 200.35 486310000 122240000 97187000 88070000 811820 768440 0 19650000 26493000 28342000 0 0 0 8274400 12151000 4380500 0 0 0 27457000 26378000 24113000 0 0 0 8709 106 8490 161636;161637;161638;161639;161640;161641;161642;161643;161644;161645;161646;161647;161648;161649;161650;161651;161652;161653;161654;161655;161656;161657;161658;161659;161660 99427;99428;99429;99430;99431 99430 4 HIFISNLK Unmodified 970.56 0.56000128 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.62 20.035 2 2.0037E-06 7960 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 188.81 164.18 1287200000 84105000 82739000 81202000 1274200 1265400 1139800 133990000 119710000 135130000 1500900 0 0 99514000 80559000 71336000 0 0 0 133910000 132450000 127370000 0 0 0 8710 1759 8491 161661;161662;161663;161664;161665;161666;161667;161668;161669;161670;161671;161672;161673;161674;161675;161676 99432;99433;99434;99435;99436;99437;99438;99439;99440;99441;99442;99443 99434 12 HIGGGHK Unmodified 704.37181 0.37180658 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 5.4937 6.1198 2 0.0074891 1346 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.093 91.093 1809300000 237990000 199390000 220680000 8029600 8165900 9184100 0 277750 0 15580000 19912000 18126000 112720000 99235000 83154000 22772000 15800000 20423000 219410000 204350000 215440000 30039000 23137000 25494000 8711 1620 8492 161677;161678;161679;161680;161681;161682;161683;161684;161685;161686;161687;161688;161689;161690;161691;161692;161693;161694;161695;161696;161697;161698;161699 99444;99445;99446;99447;99448;99449;99450;99451;99452;99453;99454;99455;99456;99457;99458;99459;99460;99461;99462;99463 99447 20 HIGLSNVTPTQVAEAR Unmodified 1691.8955 0.89548193 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 2 2 20.521 20.23 2;3 1.6389E-49 10693 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 282.12 272.29 624740000 90933000 78038000 60108000 2883200 3021200 34552000 13674000 13652000 20252000 34064000 8887900 43529000 12020000 8554300 6706800 28880000 16760000 16494000 10322000 10659000 9064000 20277000 35715000 45691000 8712 1278 8493 161700;161701;161702;161703;161704;161705;161706;161707;161708;161709;161710;161711;161712;161713;161714;161715;161716;161717;161718;161719;161720;161721;161722;161723;161724;161725;161726;161727;161728;161729;161730;161731;161732;161733;161734 99464;99465;99466;99467;99468;99469;99470;99471 99469 8 HIGPDAAQQQEMLNAVGAQSLNALTGQIVPK Unmodified 3198.6455 0.64554518 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 52.354 51.076 3;4 7.8363E-55 24717 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 236.79 230.63 2494200000 163700000 176950000 140480000 12091000 14147000 17345000 163490000 206310000 185110000 19263000 14393000 12723000 175950000 159910000 179070000 0 0 0 279010000 260390000 270920000 15390000 14567000 12988000 8713 1409 8494 161735;161736;161737;161738;161739;161740;161741;161742;161743;161744;161745;161746;161747;161748;161749;161750;161751;161752;161753;161754;161755;161756;161757;161758;161759;161760;161761;161762;161763;161764;161765;161766;161767;161768;161769;161770 99472;99473;99474;99475;99476;99477;99478;99479;99480;99481;99482;99483;99484;99485;99486;99487;99488;99489;99490;99491;99492;99493;99494;99495;99496;99497;99498;99499;99500;99501;99502 99487 31 HIGVAISGNEEDALLVNK Unmodified 1877.9847 0.98469087 584 P0AAB8 uspD Universal stress protein D yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 2 2 33.171 31.585 2;3 1.8114E-36 15388 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 233.52 231.51 509250000 38057000 41162000 31175000 0 3251600 3029700 99423000 92612000 82197000 7351800 7233200 7335900 22115000 19192000 12923000 0 0 0 13655000 14151000 14386000 0 0 0 8714 584 8495 161771;161772;161773;161774;161775;161776;161777;161778;161779;161780;161781;161782;161783;161784;161785;161786;161787;161788;161789;161790;161791;161792;161793;161794;161795;161796;161797;161798 99503;99504;99505;99506;99507;99508;99509;99510 99504 7 HIIHLINDVAK Unmodified 1271.735 0.73500553 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 2 2 2 2 2 2 2 19.695 20.162 2;3 0.00091034 7770 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.213 60.784 246600000 40678000 21988000 9149800 0 0 0 30674000 32088000 33554000 0 0 0 0 16130000 18714000 0 0 0 13359000 13669000 16596000 0 0 0 8715 709 8496 161799;161800;161801;161802;161803;161804;161805;161806;161807;161808;161809;161810;161811;161812;161813;161814;161815;161816;161817;161818;161819 99511;99512;99513;99514;99515;99516;99517 99515 1 HIINNTQDSVVNVDK Unmodified 1694.8588 0.85876208 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 17.758 18.433 2;3 2.4788E-82 6344 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 354.47 344.98 1419100000 40359000 45702000 39640000 0 0 0 128320000 133110000 137710000 0 0 0 127040000 118990000 114810000 0 0 0 184420000 192040000 156950000 0 0 0 8716 1496 8497 161820;161821;161822;161823;161824;161825;161826;161827;161828;161829;161830;161831;161832;161833;161834;161835;161836;161837;161838;161839;161840;161841;161842;161843 99518;99519;99520;99521;99522;99523;99524;99525;99526;99527;99528;99529;99530;99531;99532;99533;99534;99535;99536;99537;99538 99538 21 HIIQGPMYDVSGTAPVNVTNK Unmodified 2240.126 0.12595216 858 P0AEG6 dsbC Thiol:disulfide interchange protein DsbC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.972 30.632 2;3 1.4725E-62 14396 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 334.46 333.38 1266000000 94553000 113070000 101590000 0 0 0 118410000 111510000 117830000 0 0 0 62448000 94223000 69688000 0 0 0 128900000 138510000 115290000 0 0 0 8717 858 8498 161844;161845;161846;161847;161848;161849;161850;161851;161852;161853;161854;161855;161856;161857;161858;161859;161860;161861;161862;161863;161864;161865;161866;161867 99539;99540;99541;99542;99543;99544;99545;99546;99547;99548;99549;99550;99551;99552;99553;99554;99555;99556;99557;99558;99559;99560 99553 22 HIISINDLSR Unmodified 1166.6408 0.6407708 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 1 1 1 2 1 1 2 2 2 1 1 26.415 25.326 2;3 8.074E-05 11319 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.35 103.05 5887300000 1769800000 1989300000 1658900000 3958200 3417000 5025500 8762500 11518000 10650000 0 0 0 33351000 35423000 29604000 0 0 0 119230000 99573000 107720000 650350 467600 0 8718 318 8499 161868;161869;161870;161871;161872;161873;161874;161875;161876;161877;161878;161879;161880;161881;161882;161883;161884;161885;161886;161887;161888;161889;161890;161891;161892 99561;99562;99563;99564;99565;99566;99567;99568;99569;99570;99571;99572;99573;99574;99575 99570 15 HIKDEPASLDPAK Unmodified 1419.7358 0.73579339 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 2 2 1 1 2 2 2 12.513 13.33 2;3 1.5588E-08 3881 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 162.49 148.03 310430000 35638000 22156000 28295000 0 0 0 38476000 11613000 47766000 0 0 0 23802000 6097400 6691700 0 0 0 32020000 29761000 28110000 0 0 0 8719 1900 8500 161893;161894;161895;161896;161897;161898;161899;161900;161901;161902;161903;161904;161905;161906;161907;161908;161909;161910;161911;161912;161913 99576;99577;99578;99579;99580;99581;99582;99583;99584;99585 99580 10 HILANFENLPVAGEYMHR Unmodified 2110.0418 0.041828595 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 39.035 37.432 3;4 9.1506E-14 18044 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 137.61 137.22 739810000 32040000 34493000 21471000 6075400 7543300 6415000 66889000 65219000 67237000 52555000 57416000 45681000 27568000 26140000 27244000 6942400 4148100 4064800 42849000 40514000 54401000 11054000 15477000 16377000 8720 122 8501 161914;161915;161916;161917;161918;161919;161920;161921;161922;161923;161924;161925;161926;161927;161928;161929;161930;161931;161932;161933;161934;161935;161936;161937;161938;161939;161940;161941;161942;161943;161944;161945;161946;161947;161948;161949;161950;161951;161952;161953;161954;161955;161956;161957;161958;161959 99586;99587;99588;99589;99590;99591;99592;99593;99594;99595;99596;99597;99598;99599;99600;99601;99602;99603;99604;99605;99606 99598 21 HILDSIVVAPYLQGER Unmodified 1808.9785 0.97848328 281 P0A6U5 rsmG Ribosomal RNA small subunit methyltransferase G yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 2 2 1 1 1 1 1 1 1 1 1 45.136 43.402 2;3 0.00047508 21608 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.021 73.341 113160000 0 3496200 3233600 0 0 0 38776000 23802000 20647000 1729600 1231500 1145900 2486000 3013400 2651100 0 0 0 3144200 3051100 4752000 0 0 0 8721 281 8502 161960;161961;161962;161963;161964;161965;161966;161967;161968;161969;161970;161971;161972;161973;161974;161975;161976 99607;99608;99609;99610;99611 99608 0 HILGLDHK Unmodified 931.52395 0.52395013 1719 P68191 sra Stationary-phase-induced ribosome-associated protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.465 13.179 2 0.00018486 3237 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 153.73 143.59 1336200000 323190000 215350000 209710000 3834800 4310000 4669400 128710000 124720000 136630000 27380000 33172000 35369000 0 35794000 25403000 0 0 0 25440000 0 0 0 2516200 0 8722 1719 8503 161977;161978;161979;161980;161981;161982;161983;161984;161985;161986;161987;161988;161989;161990;161991;161992;161993 99612;99613;99614;99615;99616;99617;99618;99619;99620;99621 99614 10 HILIAVDLSPESK Unmodified 1420.7926 0.79257999 847 P0AED0 uspA Universal stress protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 3 2 2 2 2 1 1 1 33.983 32.515 2;3 5.4429E-09 15888 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.58 164.25 6466400000 733190000 654950000 598800000 61588000 61675000 66177000 846240000 855800000 716820000 64937000 41180000 50531000 295370000 262980000 288530000 6164600 5639500 9790500 271640000 275120000 282410000 4930200 5614200 6306800 8723 847 8504 161994;161995;161996;161997;161998;161999;162000;162001;162002;162003;162004;162005;162006;162007;162008;162009;162010;162011;162012;162013;162014;162015;162016;162017;162018;162019;162020;162021;162022;162023;162024;162025;162026;162027;162028;162029;162030;162031;162032;162033;162034;162035;162036;162037;162038 99622;99623;99624;99625;99626;99627;99628;99629;99630;99631;99632;99633;99634;99635;99636;99637;99638;99639;99640;99641;99642;99643;99644;99645;99646;99647;99648;99649;99650;99651;99652;99653;99654;99655;99656;99657;99658;99659;99660;99661;99662;99663;99664;99665;99666;99667;99668;99669;99670;99671;99672;99673;99674;99675;99676;99677;99678;99679;99680;99681;99682;99683;99684 99633 57 HILLKPSPIMTDEQAR Unmodified 1847.9928 0.99275314 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 23.174 22.445 2;3;4 1.0275E-09 10012 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.23 165.91 1986600000 183470000 207330000 199580000 0 0 0 131920000 163890000 157430000 0 0 0 147290000 135610000 142850000 0 0 0 157140000 182730000 177370000 0 0 0 8724 688 8505 162039;162040;162041;162042;162043;162044;162045;162046;162047;162048;162049;162050;162051;162052;162053;162054;162055;162056;162057;162058;162059;162060;162061;162062;162063;162064;162065;162066;162067;162068;162069;162070;162071;162072;162073;162074 99685;99686;99687;99688;99689;99690;99691;99692;99693;99694;99695;99696;99697;99698;99699;99700;99701 99686 15 HILNEQHGYK Unmodified 1237.6204 0.62036971 1242 P24203 yjiA Uncharacterized GTP-binding protein YjiA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 10.94 11.761 2;3 1.7769E-06 2865 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 161.27 156.28 549600000 71052000 42721000 68194000 0 0 0 51751000 38556000 36178000 0 0 0 40325000 27766000 34307000 0 0 0 46881000 39342000 52529000 0 0 0 8725 1242 8506 162075;162076;162077;162078;162079;162080;162081;162082;162083;162084;162085;162086;162087;162088;162089;162090;162091;162092;162093;162094;162095;162096;162097 99702;99703;99704;99705;99706;99707;99708;99709;99710;99711;99712 99703 11 HILTENAR Unmodified 952.50903 0.50902834 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 1 1 1 1 1 1 1 1 1 11.112 11.914 2 0.0031357 3056 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.662 77.698 457630000 51732000 71931000 76013000 0 0 0 55737000 42730000 51521000 0 0 0 13047000 16928000 15782000 0 0 0 21049000 19391000 21766000 0 0 0 8726 278 8507 162098;162099;162100;162101;162102;162103;162104;162105;162106;162107;162108;162109;162110;162111 99713;99714;99715 99714 1 HIPAWFYK Unmodified 1060.5494 0.54943659 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 29.164 27.789 2 0.0027205 13195 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.133 93.804 105540000 0 0 0 0 0 0 27119000 26753000 25443000 0 0 0 9937600 8378000 7911100 0 0 0 0 0 0 0 0 0 8727 1282 8508 162112;162113;162114;162115;162116;162117 99716;99717 99717 2 HIPEFVR Unmodified 896.48684 0.48683634 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.951 18.434 2 0.0034949 6683 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.74 102.09 7179800000 1304800000 1230700000 1080300000 3580700 3779400 4372700 487650000 442880000 467640000 10733000 10901000 8830200 203230000 187360000 186910000 0 0 0 584900000 460170000 492590000 3131800 2367300 3023800 8728 657 8509 162118;162119;162120;162121;162122;162123;162124;162125;162126;162127;162128;162129;162130;162131;162132;162133;162134;162135;162136;162137;162138 99718;99719;99720;99721;99722;99723;99724;99725;99726;99727;99728;99729;99730;99731;99732;99733;99734;99735 99730 18 HIPMVVMDWGEAK Unmodified 1511.7265 0.72649104 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 39.49 37.91 2;3 1.9265E-05 17553 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 82.362 81.553 276770000 39119000 40149000 34435000 0 0 0 7969800 11185000 0 0 0 0 23112000 26198000 23503000 0 0 0 24026000 23386000 23686000 0 0 0 8729 740 8510 162139;162140;162141;162142;162143;162144;162145;162146;162147;162148;162149;162150;162151;162152;162153;162154;162155;162156;162157;162158 99736;99737;99738;99739;99740;99741;99742;99743;99744;99745;99746;99747;99748;99749;99750;99751;99752;99753;99754 99753 19 HIQVVLR Unmodified 863.53412 0.53412088 983 P0AG40 ribF Riboflavin biosynthesis protein RibF;Riboflavin kinase;FMN adenylyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 15.113 15.888 2 0.0046378 5444 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 102.98 73.642 165820000 21735000 27733000 30131000 288300 0 0 12181000 13050000 14324000 0 0 0 0 10559000 0 0 0 0 11816000 12349000 11653000 0 0 0 8730 983 8511 162159;162160;162161;162162;162163;162164;162165;162166;162167;162168;162169 99755;99756;99757;99758 99757 3 HISCQNEIGMVPISEEEVTQEDVENVVHTAK Unmodified 3520.645 0.64501242 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.025 40.199 4 9.2628E-13 19502 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.83 120.37 440990000 0 0 0 8183900 8418300 7256100 31547000 36471000 31969000 14558000 16548000 12457000 39682000 24777000 30346000 0 0 3981900 48272000 47906000 56681000 8189300 5792900 7955100 8731 656 8512 162170;162171;162172;162173;162174;162175;162176;162177;162178;162179;162180;162181;162182;162183;162184;162185;162186;162187;162188 99759;99760;99761;99762;99763;99764;99765;99766;99767;99768;99769;99770;99771;99772;99773 99768 15 HISGQFNAELESIR Unmodified 1599.8005 0.80051892 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 28.544 27.182 2;3 9.7484E-27 11844 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 241.15 225.52 1450200000 20452000 15387000 19687000 1744000 2020500 3552500 124880000 159440000 138700000 21609000 18246000 16764000 86774000 84186000 99054000 3107700 2942800 4442900 189600000 206490000 181430000 15804000 15457000 18462000 8732 531 8513 162189;162190;162191;162192;162193;162194;162195;162196;162197;162198;162199;162200;162201;162202;162203;162204;162205;162206;162207;162208;162209;162210;162211;162212;162213;162214;162215;162216;162217;162218;162219;162220;162221;162222;162223;162224;162225;162226;162227;162228;162229;162230 99774;99775;99776;99777;99778;99779;99780;99781;99782;99783;99784;99785;99786;99787;99788;99789;99790;99791;99792;99793;99794;99795;99796;99797;99798;99799;99800;99801;99802;99803;99804;99805;99806;99807 99807 32 HITGKPIK Unmodified 892.54944 0.54943659 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 6.8588 7.7174 2 0.0061587 1716 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 91.069 38.385 39621000 7693500 5674900 8034800 0 0 0 0 0 0 0 0 0 2606400 2418300 2576800 0 0 0 3325200 3220300 4070700 0 0 0 8733 1009 8514 162231;162232;162233;162234;162235;162236;162237;162238;162239 99808;99809;99810 99808 3 HITGLHYNPITNTFK Unmodified 1754.9104 0.91040372 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 1 26.7 25.591 2;3 2.6335E-11 11932 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.22 151.27 742450000 73373000 79133000 63768000 0 0 0 71383000 65581000 61151000 0 0 0 45538000 42594000 42417000 1115800 0 0 74365000 63654000 57937000 0 446790 0 8734 1146 8515 162240;162241;162242;162243;162244;162245;162246;162247;162248;162249;162250;162251;162252;162253;162254;162255;162256;162257;162258;162259;162260;162261;162262;162263;162264;162265 99811;99812;99813;99814;99815;99816;99817;99818;99819;99820;99821;99822;99823 99813 13 HITLWFWLVER Unmodified 1498.8085 0.80850483 185 P08337 mutT 8-oxo-dGTP diphosphatase yes yes 0 0 0 By MS/MS 1 35.786 33.782 2 0.16443 16481 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 35.269 5.7955 119810000 0 0 0 0 0 0 119810000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8735 185 8516 162266 99824 99824 1 HITSVMVADGDHLLGVLHMHDLLR Unmodified 2678.3785 0.37849522 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 2 2 2 2 2 2 46.328 44.853 4;5 1.8538E-10 22297 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.55 125.51 532940000 64237000 70348000 48037000 724320 0 980070 42210000 37679000 26901000 0 0 0 33967000 26984000 35928000 0 0 0 51035000 55834000 38083000 0 0 0 8736 1565 8517 162267;162268;162269;162270;162271;162272;162273;162274;162275;162276;162277;162278;162279;162280;162281;162282;162283;162284;162285;162286;162287;162288;162289;162290;162291 99825;99826;99827;99828;99829;99830;99831;99832;99833;99834;99835;99836;99837 99826 13 HITTEIANATPFYYAEDDHQQYLHK Unmodified 3004.3992 0.39915013 309 P0A744 msrA Peptide methionine sulfoxide reductase MsrA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.622 31.132 4 1.1509E-30 14639 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 190.37 188.15 930680000 107500000 113360000 98084000 2911900 2820500 2783700 100240000 98362000 106000000 13702000 0 0 46740000 40397000 42932000 0 0 0 50278000 46674000 51493000 0 6398400 0 8737 309 8518 162292;162293;162294;162295;162296;162297;162298;162299;162300;162301;162302;162303;162304;162305;162306;162307;162308 99838;99839;99840;99841;99842;99843;99844;99845;99846;99847;99848;99849;99850 99847 13 HITYYLDRPDVLAR Unmodified 1730.9104 0.91040372 94 P04825 pepN Aminopeptidase N yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 28.479 27.155 2;3 3.6286E-14 12484 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 202.96 187.76 1670200000 204520000 173660000 171290000 0 0 0 133570000 162340000 154390000 2305000 0 365350 81125000 80070000 93460000 0 0 0 137310000 150280000 125520000 0 0 0 8738 94 8519 162309;162310;162311;162312;162313;162314;162315;162316;162317;162318;162319;162320;162321;162322;162323;162324;162325;162326;162327;162328;162329;162330;162331;162332;162333;162334 99851;99852;99853;99854;99855;99856;99857;99858;99859;99860;99861;99862;99863;99864;99865 99858 15 HIVDGFSFELSK Unmodified 1377.6929 0.69286595 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 36.717 35.032 3 5.2712E-06 17216 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.43 100.31 89779000 11981000 15339000 10158000 436310 0 427680 17030000 15658000 15526000 0 0 0 0 3222700 0 0 0 0 0 0 0 0 0 0 8739 1174 8520 162335;162336;162337;162338;162339;162340;162341;162342;162343 99866;99867;99868;99869;99870;99871 99867 6 HIVGAIANEGDISSR Unmodified 1537.7849 0.78486885 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 2 1 1 2 2 2 1 19.811 20.321 2;3 3.2908E-06 7806 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.85 97.323 81460000 12228000 11000000 9024000 1211400 1273200 1388000 2743600 0 2767200 0 0 0 4827100 1694200 2583100 0 0 0 12427000 7825500 9559100 0 0 907700 8740 544 8521 162344;162345;162346;162347;162348;162349;162350;162351;162352;162353;162354;162355;162356;162357;162358;162359;162360;162361;162362;162363;162364;162365 99872;99873;99874 99874 1 HIWFDKAQFR Unmodified 1346.6884 0.68838969 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 22.245 22.195 2 0.12911 9447 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 43.246 35.026 20714000 4170200 0 3956400 0 0 0 7507300 0 5080500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8741 326 8522 162366;162367;162368;162369 99875 99875 1 HIYAQVIAPNGSEVLVAASTVEK Unmodified 2395.2747 0.27472488 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 41.181 39.453 2;3 3.0158E-44 19213 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 244.88 240.33 1213200000 123040000 110750000 104910000 22172000 23837000 22829000 51287000 48544000 39977000 45059000 38292000 40496000 51224000 44983000 44451000 14961000 16819000 10356000 89165000 91512000 85455000 28959000 31941000 32227000 8742 1031 8523 162370;162371;162372;162373;162374;162375;162376;162377;162378;162379;162380;162381;162382;162383;162384;162385;162386;162387;162388;162389;162390;162391;162392;162393;162394;162395;162396;162397;162398;162399;162400;162401;162402;162403;162404;162405;162406;162407;162408;162409;162410;162411;162412;162413 99876;99877;99878;99879;99880;99881;99882;99883;99884;99885;99886;99887;99888;99889;99890;99891;99892;99893;99894;99895;99896;99897;99898;99899;99900;99901;99902;99903;99904;99905;99906;99907;99908;99909 99904 34 HIYGEGK Unmodified 802.39735 0.39735263 1293 P27242 waaU Lipopolysaccharide 1,2-N-acetylglucosaminetransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 8.7618 9.4266 2 0.10175 2031 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 62.714 52.408 9149700 0 0 0 0 0 0 0 1573100 1520000 0 0 771930 0 0 0 0 0 0 2152300 3132300 0 0 0 0 8743 1293 8524 162414;162415;162416;162417;162418 99910 99910 0 HKAEAAH Unmodified 762.37729 0.37728589 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 3.2936 4.1263 2 0.039218 544 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 74.415 74.415 7477000 3066400 2627600 1783000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8744 658 8525 162419;162420;162421 99911;99912;99913 99913 3 HKAEYTPHVDTGDYIIVLNADK Unmodified 2498.2442 0.24415304 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 3 2 2 3 3 2 2 2 3 2 2 2 2 2 3 3 2 1 2 2 31.983 30.619 3;4;5 4.5338E-28 14413 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 184.95 184.03 2111100000 188630000 251110000 253250000 21692000 19372000 21399000 82632000 77783000 74669000 33200000 39075000 24154000 94705000 78287000 86271000 42711000 34344000 27891000 197760000 221440000 161510000 12384000 30229000 36613000 8745 569 8526 162422;162423;162424;162425;162426;162427;162428;162429;162430;162431;162432;162433;162434;162435;162436;162437;162438;162439;162440;162441;162442;162443;162444;162445;162446;162447;162448;162449;162450;162451;162452;162453;162454;162455;162456;162457;162458;162459;162460;162461;162462;162463;162464;162465;162466;162467;162468;162469;162470;162471;162472;162473;162474;162475;162476;162477 99914;99915;99916;99917;99918;99919;99920;99921;99922;99923;99924;99925;99926;99927;99928;99929;99930;99931;99932;99933;99934;99935;99936;99937;99938;99939;99940;99941;99942;99943;99944;99945;99946;99947;99948 99943 35 HKAEYTPHVDTGDYIIVLNADKVAVTGNK Unmodified 3167.6251 0.62512732 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 2 By matching By MS/MS By MS/MS 1 1 1 32.028 32.05 5 0.0011876 10616 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 55.413 55.322 9884000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2184200 3969600 3730200 0 0 0 0 0 0 8746 569 8527 162478;162479;162480 99949;99950 99949 2 HKAGEHIGICSVCSAHPLVIEAALAFDR Unmodified 3057.5277 0.52767866 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 2 1 1 1 39.51 37.416 4;5 1.0741E-05 15290 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 78.45 78.151 72809000 0 0 0 4526100 8550200 6544700 0 0 0 17863000 6102400 9023400 0 0 0 0 0 0 0 0 0 5796200 6948000 7454900 8747 1046 8528 162481;162482;162483;162484;162485;162486;162487;162488;162489;162490;162491;162492;162493;162494 99951;99952;99953;99954;99955;99956;99957 99951 6 HKANLTAQINK Unmodified 1236.6939 0.693869 372 P0A7U7 rpsT 30S ribosomal protein S20 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 11.203 11.586 2;3 4.7675E-07 2320 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 159.83 139.13 328110000 0 0 0 32420000 42425000 33929000 0 0 0 24940000 19099000 22550000 0 0 0 25636000 46942000 29295000 0 0 0 16547000 18543000 15784000 8748 372 8529 162495;162496;162497;162498;162499;162500;162501;162502;162503;162504;162505;162506;162507;162508;162509;162510;162511;162512;162513;162514;162515;162516;162517 99958;99959;99960;99961;99962;99963;99964;99965;99966;99967;99968;99969;99970;99971;99972;99973 99969 16 HKATLLGLGLR Unmodified 1177.7295 0.72952623 986 P0AG51 rpmD 50S ribosomal protein L30 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 22.009 21.795 3 0.018187 6799 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 50.791 48.278 25078000 0 0 0 4841200 7522800 5947600 0 0 0 0 0 0 0 0 0 2371900 2334600 2059900 0 0 0 0 0 0 8749 986 8530 162518;162519;162520;162521;162522;162523 99974 99974 1 HKDKPVIVVDGSGMQCQEPANALTK Unmodified 2721.3578 0.35781936 981 P0AG27 yibN Uncharacterized protein YibN yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 22.682 22.107 4 0.002478 7692 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 54.072 51.962 58428000 13181000 0 0 0 5127500 3691800 0 0 0 8235300 5852800 7813200 0 0 0 1425300 1421800 1658800 0 0 0 4692800 0 5327200 8750 981 8531 162524;162525;162526;162527;162528;162529;162530;162531;162532;162533;162534 99975;99976;99977 99975 3 HKEDMEAR Unmodified 1014.4553 0.45527821 1670 P64455 ydcY Uncharacterized protein YdcY yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 4.9606 5.879 2 0.00047482 980 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.52 121.56 321480000 43116000 0 0 596790 405950 483730 38991000 32935000 33162000 0 0 0 31559000 26808000 27135000 0 0 0 30638000 28422000 27223000 0 0 0 8751 1670 8532 162535;162536;162537;162538;162539;162540;162541;162542;162543;162544;162545;162546;162547;162548 99978;99979;99980;99981 99978 4 HKEHLGTGDVK Unmodified 1219.6309 0.63093439 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 2 3 3 6.2648 7.1305 2;3 2.9874E-06 1118 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 124.67 96.46 357360000 24133000 60566000 58264000 0 0 0 0 19593000 0 0 0 0 21280000 30370000 35368000 0 0 0 50094000 29136000 28559000 0 0 0 8752 937 8533 162549;162550;162551;162552;162553;162554;162555;162556;162557;162558;162559;162560;162561;162562;162563;162564;162565;162566;162567;162568;162569;162570 99982;99983;99984;99985;99986;99987;99988;99989;99990;99991;99992;99993;99994;99995;99996;99997;99998;99999;100000;100001;100002;100003;100004 99984 23 HKGPLNVFENIEMPLVPVLSR Unmodified 2388.2988 0.29877156 37 P00582 polA DNA polymerase I yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 2 2 2 1 1 1 1 2 2 2 2 2 2 1 51.663 50.635 3;4 3.2812E-10 24486 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.88 114.88 592120000 32903000 23943000 24135000 1461000 1860700 1116200 57010000 62593000 62286000 0 2712300 2436200 18172000 20032000 36769000 29006000 30622000 40542000 58250000 60149000 26124000 0 0 0 8753 37 8534 162571;162572;162573;162574;162575;162576;162577;162578;162579;162580;162581;162582;162583;162584;162585;162586;162587;162588;162589;162590;162591;162592;162593;162594;162595;162596;162597;162598;162599;162600;162601 100005;100006;100007;100008;100009;100010;100011;100012;100013;100014;100015;100016;100017;100018;100019;100020;100021;100022 100018 16 HKIPTAEYQNFTEVEPALAYLR Unmodified 2589.3227 0.32273771 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 1 1 2 2 2 2 42.1 40.483 3;4 3.2161E-15 19731 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143.14 142.42 399090000 101650000 117280000 111380000 0 0 0 0 4631500 3522200 0 0 0 3767400 4482900 9257800 0 0 0 12144000 15452000 15517000 0 0 0 8754 1112 8535 162602;162603;162604;162605;162606;162607;162608;162609;162610;162611;162612;162613;162614;162615;162616;162617;162618;162619 100023;100024;100025;100026 100026 3 HKTPIIFR Unmodified 1010.6025 0.6025348 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.026 13.901 2 0.0011059 3947 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 129.4 123.86 347830000 91142000 0 0 0 0 0 31711000 29284000 30791000 0 0 0 22601000 23650000 26569000 0 0 0 33489000 29479000 29115000 0 0 0 8755 58 8536 162620;162621;162622;162623;162624;162625;162626;162627;162628;162629;162630;162631 100027;100028;100029;100030;100031;100032;100033;100034;100035;100036;100037;100038 100038 12 HKVDAPSGTALAMGEAIAHALDK Unmodified 2302.174 0.17396498 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.925 40.226 3;4 1.8429E-06 20043 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 93.093 91.666 752440000 89762000 61968000 56077000 0 0 0 81446000 64049000 66390000 0 0 0 55223000 38742000 47961000 0 0 0 57452000 73311000 60057000 0 0 0 8756 85 8537 162632;162633;162634;162635;162636;162637;162638;162639;162640;162641;162642;162643;162644;162645;162646;162647;162648;162649;162650;162651;162652;162653;162654;162655 100039;100040;100041;100042;100043;100044;100045;100046;100047;100048;100049;100050;100051 100041 13 HLADTGVLGGIISGAIAAYMFNR Unmodified 2346.2154 0.21543586 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 2 2 2 1 1 1 1 1 2 2 1 52.861 51.597 3;4 9.5521E-22 21896 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 159.04 156.95 339070000 0 0 0 0 0 0 27629000 15371000 21002000 41226000 34319000 41763000 0 0 0 27577000 17552000 20032000 22923000 21464000 0 19039000 16557000 12621000 8757 1742 8538 162656;162657;162658;162659;162660;162661;162662;162663;162664;162665;162666;162667;162668;162669;162670;162671;162672;162673;162674 100052;100053;100054;100055 100053 4 HLAEQVQPLR Unmodified 1189.6568 0.65675521 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 1 1 2 1 1 15.226 15.791 2;3 5.601E-07 5269 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 198.65 189.43 1196800000 37701000 41640000 36367000 1121600 1396200 1230500 40599000 44022000 24569000 7653200 9391600 3377400 36645000 26383000 28077000 327840000 390290000 5136900 53662000 33154000 33868000 6795800 2810100 3024000 8758 1197 8539 162675;162676;162677;162678;162679;162680;162681;162682;162683;162684;162685;162686;162687;162688;162689;162690;162691;162692;162693;162694;162695;162696;162697;162698;162699;162700;162701;162702;162703;162704;162705;162706;162707;162708;162709;162710;162711;162712;162713;162714;162715 100056;100057;100058;100059;100060;100061;100062;100063;100064;100065;100066;100067;100068;100069 100060 12 HLAFSVDDIDAAVAHLESHNVK Unmodified 2387.187 0.18697251 1603 P52096 yaeR Uncharacterized protein YaeR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 1 2 2 2 2 2 2 1 1 44.331 42.792 3;4 1.5874E-15 20878 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 149.94 143.07 579390000 47503000 44287000 44951000 2322200 0 1289500 69152000 72475000 53958000 0 0 0 37970000 33258000 31435000 0 0 0 50231000 44402000 41323000 0 2612700 2220000 8759 1603 8540 162716;162717;162718;162719;162720;162721;162722;162723;162724;162725;162726;162727;162728;162729;162730;162731;162732;162733;162734;162735;162736;162737;162738;162739;162740;162741;162742 100070;100071;100072;100073;100074;100075;100076;100077;100078;100079;100080;100081;100082 100073 12 HLAHVLSEK Unmodified 1032.5716 0.5716286 631 P0AB61 yciN Protein YciN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.26 11.943 2 9.6568E-06 2806 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 167.24 153.08 1158200000 175290000 112820000 112320000 0 0 0 129100000 96943000 103400000 6128500 6964900 8457300 90414000 74350000 77718000 0 0 0 58219000 51187000 54876000 0 0 0 8760 631 8541 162743;162744;162745;162746;162747;162748;162749;162750;162751;162752;162753;162754;162755;162756;162757 100083;100084;100085;100086;100087;100088;100089;100090;100091;100092;100093;100094 100094 12 HLALGVAGWMR Unmodified 1209.6441 0.64408204 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.022 33.566 3 6.781E-05 16080 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.998 80.87 67894000 9410200 6302400 5580100 0 0 0 5383800 6861500 6128100 0 0 0 4599500 3872700 4708500 0 0 0 5921900 5755600 3370000 0 0 0 8761 1508 8542 162758;162759;162760;162761;162762;162763;162764;162765;162766;162767;162768;162769 100095;100096;100097;100098;100099;100100;100101;100102;100103 100099 7 HLAVAVTPVAGQLDLK Unmodified 1630.9406 0.94064121 608 P0AAR3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 34.837 33.405 2;3 1.5387E-13 15798 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 176.51 162.69 263710000 49355000 45340000 34783000 0 0 0 10843000 15197000 15587000 0 0 0 9955300 12205000 10948000 0 0 0 21256000 18680000 19563000 0 0 0 8762 608 8543 162770;162771;162772;162773;162774;162775;162776;162777;162778;162779;162780;162781;162782;162783;162784;162785;162786;162787;162788;162789;162790;162791;162792 100104;100105;100106;100107 100107 3 HLAVSSFSMENPQGFGLLQR Unmodified 2217.1001 0.10007176 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 2 1 1 1 2 2 1 1 1 1 1 1 1 1 44.401 42.851 2;3 6.262E-57 20892 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 361.84 348.16 415390000 72283000 66547000 63810000 0 2724200 0 6745300 7516500 9417400 16548000 12266000 15495000 5113100 44911000 33469000 0 3916600 5171700 6861500 8169100 7103000 7932100 10772000 8617100 8763 1408 8544 162793;162794;162795;162796;162797;162798;162799;162800;162801;162802;162803;162804;162805;162806;162807;162808;162809;162810;162811;162812;162813;162814;162815;162816;162817;162818;162819 100108;100109;100110;100111;100112;100113;100114;100115;100116 100113 8 HLDAIQNFGAMDILCTDK Unmodified 2060.9659 0.96594604 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 46.451 45.062 2;3 4.2123E-68 21223 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 315.13 312.35 535550000 0 0 0 0 0 0 3612200 4761900 4707300 3398800 2079300 3032700 140960000 138330000 126150000 10359000 9162100 10030000 30245000 7111000 29994000 3635200 4786900 3186100 8764 647 8545 162820;162821;162822;162823;162824;162825;162826;162827;162828;162829;162830;162831;162832;162833;162834;162835;162836;162837;162838;162839;162840;162841;162842 100117;100118;100119;100120;100121;100122;100123;100124;100125;100126;100127;100128 100124 12 HLDALLSSGHNVVGVFTQPDRPAGR Unmodified 2642.3677 0.36773084 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.835 33.379 4 4.8836E-17 15827 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.3 145.98 697620000 60228000 57342000 52352000 0 0 0 79984000 67778000 71730000 0 0 0 41541000 36633000 53663000 0 0 0 55423000 63005000 57939000 0 0 0 8765 1224 8546 162843;162844;162845;162846;162847;162848;162849;162850;162851;162852;162853;162854 100129;100130;100131 100131 3 HLDALVADEDLSR Unmodified 1452.7209 0.72087161 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 27.675 26.486 2;3 6.4091E-13 12004 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.67 149.46 1993400000 137650000 127840000 116550000 14299000 14520000 15323000 181450000 160720000 174040000 38337000 25842000 29629000 130060000 104710000 104330000 6291700 7319400 6649600 190220000 164950000 176030000 23508000 20494000 22649000 8766 245 8547 162855;162856;162857;162858;162859;162860;162861;162862;162863;162864;162865;162866;162867;162868;162869;162870;162871;162872;162873;162874;162875;162876;162877;162878;162879;162880;162881;162882;162883;162884;162885;162886;162887;162888;162889;162890;162891;162892;162893;162894;162895;162896;162897;162898;162899;162900;162901;162902 100132;100133;100134;100135;100136;100137;100138;100139;100140;100141;100142;100143;100144;100145;100146;100147;100148;100149;100150;100151;100152;100153;100154;100155;100156;100157;100158;100159;100160;100161;100162;100163;100164;100165;100166;100167;100168;100169 100150 37 HLDGNIR Unmodified 823.43005 0.43004974 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 10.756 11.697 2 0.10664 2719 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 52.683 35.756 21558000 0 0 0 0 0 0 0 0 0 0 0 0 6860800 7636900 7060400 0 0 0 0 0 0 0 0 0 8767 1196 8548 162903;162904;162905 100170 100170 1 HLDGNIRPQTILELGR Unmodified 1831.0064 0.006429367 1196 P22333 add Adenosine deaminase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 1 1 3 3 3 1 1 2 3 3 3 1 2 1 3 3 3 1 33.677 32.266 2;3;4 3.4806E-10 15232 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.88 132.74 1810800000 113280000 116800000 87792000 3622700 4049000 4467500 155380000 152310000 149570000 27812000 25263000 23077000 151760000 150580000 149380000 12621000 16631000 12378000 151190000 147530000 149440000 0 0 5894500 8768 1196 8549 162906;162907;162908;162909;162910;162911;162912;162913;162914;162915;162916;162917;162918;162919;162920;162921;162922;162923;162924;162925;162926;162927;162928;162929;162930;162931;162932;162933;162934;162935;162936;162937;162938;162939;162940;162941;162942;162943;162944;162945;162946;162947;162948;162949;162950;162951;162952;162953 100171;100172;100173;100174;100175;100176;100177;100178;100179;100180;100181;100182;100183;100184;100185;100186;100187;100188;100189;100190;100191;100192;100193;100194;100195;100196;100197;100198;100199;100200;100201;100202;100203;100204;100205 100191 32 HLEAGCDLLK Unmodified 1154.5754 0.57539335 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 4 4 2 1 1 1 1 2 1 1 1 1 20.012 20.114 2;3 4.7931E-09 6394 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 193.38 163.21 4353400000 64185000 59807000 51330000 0 0 0 66604000 85573000 69089000 1424600000 1046300000 1132300000 49181000 49174000 37516000 0 0 0 66486000 66835000 70213000 3737900 4483800 5970400 8769 497 8550 162954;162955;162956;162957;162958;162959;162960;162961;162962;162963;162964;162965;162966;162967;162968;162969;162970;162971;162972;162973;162974;162975;162976;162977;162978;162979;162980;162981 100206;100207;100208;100209;100210;100211;100212;100213;100214;100215;100216;100217;100218;100219;100220;100221;100222;100223;100224;100225;100226;100227 100206 18 HLECVAYPELGMEAIWK Unmodified 2044.9751 0.97505416 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 47.376 45.884 2 5.8538E-15 22721 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 157.56 154.77 48045000 0 0 0 0 0 0 8790400 10756000 9824200 0 0 0 6046800 5041100 7586200 0 0 0 0 0 0 0 0 0 8770 1097 8551 162982;162983;162984;162985;162986;162987 100228;100229;100230;100231;100232 100229 1 HLEFFNTQPFVAAPILGVTLALEEQR Unmodified 2939.5545 0.55452856 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.49 54.067 3 8.4045E-23 21743 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 175.46 170.17 412300000 8339900 0 0 8117700 5955200 6400400 0 0 0 92317000 96645000 97082000 43667000 0 0 0 0 0 0 0 0 16547000 21150000 16074000 8771 1747 8552 162988;162989;162990;162991;162992;162993;162994;162995;162996;162997;162998 100233;100234;100235;100236 100233 4 HLESVVTNK Unmodified 1025.5506 0.55055881 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.878 12.484 2 9.6245E-16 3404 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 226.04 187.08 2771500000 317200000 301970000 268950000 12348000 14645000 14992000 309120000 273960000 296660000 22145000 18583000 20248000 166410000 144100000 144050000 1420600 1274600 1483100 112830000 115670000 95804000 37489000 42617000 37573000 8772 1653 8553 162999;163000;163001;163002;163003;163004;163005;163006;163007;163008;163009;163010;163011;163012;163013;163014;163015;163016;163017;163018;163019;163020;163021;163022 100237;100238;100239;100240;100241;100242;100243;100244;100245;100246;100247;100248;100249 100246 13 HLFDANTVWLGLK Unmodified 1512.8089 0.80889876 1971 Q47083 cbl HTH-type transcriptional regulator cbl yes yes 0 0 0 By MS/MS 1 47.008 45.707 3 0.00016435 22244 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 68.44 60.896 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8773 1971 8554 163023 100250 100250 1 HLFNDPNIDLIVIPTPNDTHFPLAK Unmodified 2840.4861 0.48611464 1902 P77376 ydgJ Uncharacterized oxidoreductase YdgJ yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 51.553 50.416 4 0.16382 23705 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 11.087 4.7294 62871000 0 0 0 0 0 0 0 0 0 0 0 0 28047000 28591000 2531400 0 0 0 0 0 3701900 0 0 0 8774 1902 8555 163024;163025;163026;163027 100251 100251 1 HLFTSESVSEGHPDK Unmodified 1668.7744 0.77436375 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 3 3 3 1 1 1 3 3 3 3 3 3 15.822 16.469 2;3 1.5443E-36 4468 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 341.74 315.85 5512900000 384220000 387440000 310270000 0 0 0 727540000 687190000 612740000 7388100 5668900 6934900 349320000 316030000 311560000 0 0 0 444250000 455280000 507080000 0 0 0 8775 388 8556 163028;163029;163030;163031;163032;163033;163034;163035;163036;163037;163038;163039;163040;163041;163042;163043;163044;163045;163046;163047;163048;163049;163050;163051;163052;163053;163054;163055;163056;163057;163058;163059;163060;163061;163062;163063;163064;163065;163066;163067 100252;100253;100254;100255;100256;100257;100258;100259;100260;100261;100262;100263;100264;100265;100266;100267;100268;100269;100270;100271;100272;100273;100274;100275;100276 100253 25 HLGADTDVPAGDIGVGGR Unmodified 1705.8384 0.83836099 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 24.868 23.814 2;3 6.1659E-68 10547 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 314.35 307.61 1400800000 363900000 364120000 327130000 1226700 1608700 1223600 46134000 46994000 44699000 1780800 1387400 1857600 25087000 25213000 21107000 0 0 0 41146000 41827000 44355000 0 0 0 8776 26 8557 163068;163069;163070;163071;163072;163073;163074;163075;163076;163077;163078;163079;163080;163081;163082;163083;163084;163085;163086;163087;163088;163089;163090;163091;163092;163093;163094;163095;163096;163097 100277;100278;100279;100280;100281;100282;100283;100284;100285;100286;100287;100288;100289;100290 100282 14 HLGGTIILADAHIR Unmodified 1485.8416 0.84159587 799 P0ADQ2 yiiD Uncharacterized protein YiiD yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.462 25.357 3 2.3798E-06 11370 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.02 106.71 307510000 41542000 40243000 41318000 0 0 678910 25993000 25639000 28989000 0 0 1018300 16613000 11802000 12207000 0 0 0 22330000 20484000 18652000 0 0 0 8777 799 8558 163098;163099;163100;163101;163102;163103;163104;163105;163106;163107;163108;163109;163110;163111 100291;100292;100293;100294;100295;100296;100297 100294 7 HLGIYGYR Unmodified 977.5083 0.50830006 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.771 19.255 2 0.001099 7173 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.69 55.566 516950000 31897000 32115000 27982000 0 0 0 47528000 43599000 37505000 574480 0 0 41323000 36817000 34282000 0 0 0 66319000 60235000 56772000 0 0 0 8778 97 8559 163112;163113;163114;163115;163116;163117;163118;163119;163120;163121;163122;163123;163124 100298;100299;100300;100301;100302;100303;100304;100305;100306;100307 100305 5 HLGVEASLKPTK Unmodified 1278.7296 0.7295858 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 13.226 14.091 2;3 1.4796E-23 4005 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 208.74 205.4 6034300000 757130000 611640000 570980000 0 0 0 650490000 657280000 623550000 0 0 0 407230000 380060000 345970000 0 0 0 373650000 328470000 327840000 0 0 0 8779 874 8560 163125;163126;163127;163128;163129;163130;163131;163132;163133;163134;163135;163136;163137;163138;163139;163140;163141;163142;163143;163144;163145;163146;163147;163148 100308;100309;100310;100311;100312;100313;100314;100315;100316;100317;100318;100319;100320;100321;100322;100323;100324;100325;100326;100327;100328;100329;100330;100331 100328 23 HLGVEASLKPTKWDGMLASLDSK Unmodified 2482.289 0.28899474 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.665 35.928 4 0.0074691 17273 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 43.604 38.595 153200000 21094000 23586000 20132000 728220 528680 811310 17423000 19720000 19548000 0 0 0 0 0 0 0 0 0 9082600 9366600 11177000 0 0 0 8780 874 8561 163149;163150;163151;163152;163153;163154;163155;163156;163157;163158;163159;163160 100332 100332 1 HLGVGFDQLLVVEPPYDPELDFHYR Unmodified 2954.4603 0.46029382 254 P0A6K1 dapF Diaminopimelate epimerase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 53.37 51.943 4 0.1014 25727 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 54.656 51.723 58084000 8518300 7352900 6113100 0 0 0 0 5563800 6296600 0 0 0 4267600 5705300 4338300 0 0 0 6388500 0 3539800 0 0 0 8781 254 8562 163161;163162;163163;163164;163165;163166;163167;163168;163169;163170 100333 100333 0 HLHQSGK Unmodified 805.41949 0.41948505 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 4.3686 5.1011 2 0.020298 751 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.847 76.847 57673000 24755000 16535000 16383000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8782 1830 8563 163171;163172;163173 100334 100334 1 HLISEATNYVAADYMR Unmodified 1852.8778 0.87778296 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 2 1 2 2 2 2 2 2 1 2 34.838 33.198 2;3 1.7825E-31 15731 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 246.26 235.26 304160000 23504000 16955000 19379000 0 698110 798200 24883000 24770000 23974000 3338100 4973800 3025200 20751000 19026000 18988000 0 0 0 30014000 25593000 31831000 7159200 4498100 0 8783 1197 8564 163174;163175;163176;163177;163178;163179;163180;163181;163182;163183;163184;163185;163186;163187;163188;163189;163190;163191;163192;163193;163194;163195;163196;163197;163198;163199;163200;163201;163202;163203;163204;163205;163206 100335;100336;100337;100338;100339;100340;100341;100342;100343;100344;100345;100346;100347;100348;100349;100350 100343 14 HLIVYDEGNLFSAPR Unmodified 1729.8788 0.87876924 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 38.386 36.701 2;3 2.5336E-20 17019 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 164.68 159.63 698440000 80946000 26434000 72091000 0 0 0 88798000 75282000 73440000 0 0 0 40189000 43267000 40602000 0 0 0 53183000 57190000 47015000 0 0 0 8784 1364 8565 163207;163208;163209;163210;163211;163212;163213;163214;163215;163216;163217;163218;163219;163220;163221;163222;163223;163224;163225;163226;163227;163228;163229 100351;100352;100353;100354;100355;100356;100357;100358;100359;100360;100361;100362;100363 100361 10 HLKPIALAGDAR Unmodified 1260.7303 0.73025451 1174 P21179 katE Catalase HPII yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 1 2 2 14.556 15.332 2;3 0.0015647 5198 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 99.53 58.648 1047800000 323730000 145460000 73874000 0 0 98936 106430000 116250000 128810000 0 0 0 32646000 20587000 17304000 0 0 0 10983000 36289000 35334000 0 0 0 8785 1174 8566 163230;163231;163232;163233;163234;163235;163236;163237;163238;163239;163240;163241;163242;163243;163244;163245;163246;163247;163248;163249;163250;163251;163252;163253 100364;100365;100366;100367;100368;100369;100370;100371;100372;100373;100374;100375;100376 100371 13 HLLEPVLEAMNACGSLEWTR Unmodified 2325.1246 0.12457195 769 P0AD57 ispB Octaprenyl-diphosphate synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.952 50.704 3 1.6542E-14 24708 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 137.56 133.13 266870000 18318000 18236000 16525000 0 0 0 18282000 22779000 21049000 0 0 0 17895000 15240000 15265000 0 0 0 35433000 36908000 30941000 0 0 0 8786 769 8567 163254;163255;163256;163257;163258;163259;163260;163261;163262;163263;163264;163265 100377;100378;100379 100377 3 HLLPSVVHYQQQGHSVGYDAR Unmodified 2390.188 0.18797556 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 1 1 2 2 2 1 1 2 2 2 1 2 21.621 21.636 3;4 3.4779E-15 8845 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.3 137.33 629860000 38101000 34476000 20321000 1737400 2228300 0 58528000 54840000 42377000 8702500 6246800 3109400 50028000 49713000 33642000 0 3194300 3809900 60621000 81187000 69179000 3045800 4775900 0 8787 294 8568 163266;163267;163268;163269;163270;163271;163272;163273;163274;163275;163276;163277;163278;163279;163280;163281;163282;163283;163284;163285;163286;163287;163288;163289;163290;163291;163292;163293;163294;163295;163296;163297;163298;163299;163300 100380;100381;100382;100383;100384;100385;100386;100387;100388;100389;100390;100391;100392;100393;100394;100395;100396;100397;100398;100399;100400;100401;100402;100403;100404;100405 100392 26 HLLPVAR Unmodified 804.49701 0.49700709 1798 P75959 nagK N-acetyl-D-glucosamine kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.864 15.64 2 0.14101 4870 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 57.453 47.703 185390000 11059000 9541800 10572000 0 0 0 16274000 17950000 17088000 0 0 0 14868000 11999000 13131000 0 0 0 22928000 18945000 21036000 0 0 0 8788 1798 8569 163301;163302;163303;163304;163305;163306;163307;163308;163309;163310;163311;163312 100406 100406 0 HLLQALPGSVR Unmodified 1189.6931 0.69314072 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 23.815 22.977 2;3 2.7835E-07 10124 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 183.47 177.73 341280000 38638000 37613000 33729000 0 0 527650 27555000 26523000 33761000 0 0 0 15676000 17819000 23377000 0 0 0 25846000 30777000 29439000 0 0 0 8789 1609 8570 163313;163314;163315;163316;163317;163318;163319;163320;163321;163322;163323;163324;163325;163326;163327;163328;163329;163330;163331;163332;163333;163334;163335;163336;163337;163338 100407;100408;100409;100410;100411;100412;100413;100414;100415;100416;100417;100418;100419;100420;100421;100422;100423 100413 15 HLNATIINEGDINTR Unmodified 1679.8591 0.85909643 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 24.515 23.491 2;3 8.1121E-36 10214 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 263.7 257.38 2183500000 118490000 102460000 100040000 0 0 0 212000000 212250000 191300000 10037000 12057000 7259900 245380000 206230000 225630000 0 0 0 181000000 186450000 172880000 0 0 0 8790 539 8571 163339;163340;163341;163342;163343;163344;163345;163346;163347;163348;163349;163350;163351;163352;163353;163354;163355;163356;163357;163358;163359;163360;163361;163362;163363;163364;163365;163366;163367 100424;100425;100426;100427;100428;100429;100430;100431;100432;100433;100434;100435;100436;100437;100438;100439;100440;100441;100442;100443;100444;100445;100446;100447;100448 100439 25 HLNATIINEGDINTRR Unmodified 1835.9602 0.96020746 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 20.406 20.235 3 7.8744E-05 6631 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 78.505 77.517 15486000 0 0 0 0 1048700 0 0 0 0 6125200 4517600 3794800 0 0 0 0 0 0 0 0 0 0 0 0 8791 539 8572 163368;163369;163370;163371 100449;100450 100449 2 HLNIMITAGPTR Unmodified 1322.7129 0.71288988 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 25.747 24.668 3 0.0031893 10487 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 71.085 63.05 72058000 8495700 6400200 0 0 0 0 0 8974000 9651700 0 0 0 9446700 8067600 0 0 0 0 2290100 8464400 10268000 0 0 0 8792 670 8573 163372;163373;163374;163375;163376;163377;163378;163379;163380;163381 100451;100452;100453 100453 1 HLPCDICVVEEK Unmodified 1497.6956 0.69558484 879 P0AER0 glpF Glycerol uptake facilitator protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 2 2 2 2 2 24.32 23.362 2;3 2.488E-06 10528 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 167.12 163.19 533980000 0 0 0 0 0 320410 72508000 66751000 64704000 0 0 0 50037000 42573000 51970000 0 0 0 63914000 67250000 53954000 0 0 0 8793 879 8574 163382;163383;163384;163385;163386;163387;163388;163389;163390;163391;163392;163393;163394;163395;163396;163397;163398;163399;163400;163401 100454;100455;100456;100457;100458;100459;100460;100461;100462;100463;100464;100465;100466;100467;100468;100469;100470;100471 100457 11 HLPCDICVVEEKETTTPSEQK Unmodified 2499.1621 0.16213924 879 P0AER0 glpF Glycerol uptake facilitator protein yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 23.19 22.317 3;4 8.5607E-07 7708 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 94.958 93.713 94561000 0 0 0 0 0 0 0 0 0 21030000 14419000 18130000 0 0 0 2498400 1858800 5416400 0 0 0 11519000 6768300 12921000 8794 879 8575 163402;163403;163404;163405;163406;163407;163408;163409;163410;163411;163412;163413;163414;163415 100472;100473;100474;100475;100476;100477;100478;100479;100480;100481 100475 10 HLPDSDVVSIYDAAMR Unmodified 1787.8512 0.85123386 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 40.842 39.196 2;3 9.9371E-09 19473 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.7 165.45 1361000000 372020000 349130000 318270000 0 0 0 70371000 72719000 24637000 0 0 0 18841000 16737000 18050000 0 0 0 32761000 37082000 30359000 0 0 0 8795 1254 8576 163416;163417;163418;163419;163420;163421;163422;163423;163424;163425;163426;163427;163428;163429;163430;163431;163432;163433;163434;163435;163436;163437;163438 100482;100483;100484;100485;100486;100487;100488;100489;100490;100491;100492;100493;100494;100495;100496;100497;100498;100499;100500 100485 19 HLPEPFR Unmodified 894.47119 0.47118627 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 1 1 1 2 1 1 1 1 18.678 19.062 2 0.0016502 5131 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 126.24 126.24 17424000000 2554800000 2917300000 2034100000 19904000 20699000 18891000 1614000000 1542400000 1513100000 6228100 5129900 3995200 1003200000 943340000 856480000 7032600 4590600 5287700 797100000 804350000 724400000 9282100 8915000 9124500 8796 397 8577 163439;163440;163441;163442;163443;163444;163445;163446;163447;163448;163449;163450;163451;163452;163453;163454;163455;163456;163457;163458;163459;163460;163461;163462;163463;163464;163465;163466;163467 100501;100502;100503;100504;100505;100506;100507;100508;100509;100510;100511;100512;100513;100514;100515;100516;100517;100518;100519;100520;100521;100522;100523;100524;100525;100526 100514 23 HLPSDTGIEVAFAGR Unmodified 1568.7947 0.79470526 269 P0A6P7 engB Probable GTP-binding protein EngB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.879 31.356 3 0.018592 12504 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 48.704 48.297 224370000 31613000 21744000 18896000 1223500 891630 765790 15592000 14012000 13453000 4687600 4652400 4887300 12806000 11101000 13675000 0 1215900 1825600 14180000 17083000 12026000 3130900 2701200 2208400 8797 269 8578 163468;163469;163470;163471;163472;163473;163474;163475;163476;163477;163478;163479;163480;163481;163482;163483;163484;163485;163486;163487;163488;163489;163490 100527;100528;100529;100530 100527 0 HLPVGQR Unmodified 805.45587 0.45587056 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.04 11.772 2 0.0086334 2213 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 88.627 72.473 621500000 101390000 93782000 97148000 8052700 9933900 12174000 38162000 53200000 45310000 1639100 0 0 34243000 25000000 23234000 0 0 0 0 28067000 34725000 6320000 5151700 3963900 8798 235 8579 163491;163492;163493;163494;163495;163496;163497;163498;163499;163500;163501;163502;163503;163504;163505;163506;163507;163508;163509 100531;100532;100533;100534;100535;100536;100537;100538;100539;100540;100541;100542;100543;100544;100545 100538 15 HLPYIGK Unmodified 826.47012 0.47012364 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 16.786 17.534 2 0.011921 6288 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 85.306 71.635 956500000 81507000 75436000 80870000 0 0 0 105730000 96333000 122510000 0 0 0 87313000 87473000 98555000 0 0 0 0 120780000 0 0 0 0 8799 537 8580 163510;163511;163512;163513;163514;163515;163516;163517;163518;163519 100546;100547;100548;100549;100550;100551 100547 6 HLQALEQAAEHLQQGK Unmodified 1799.9278 0.92784469 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.087 24.925 3 2.1739E-07 11346 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.636 84.96 186580000 18787000 16262000 17701000 0 0 0 16342000 16901000 25318000 0 0 0 12679000 12670000 13845000 0 0 0 12472000 13730000 9876000 0 0 0 8800 1256 8581 163520;163521;163522;163523;163524;163525;163526;163527;163528;163529;163530;163531 100552;100553;100554;100555;100556;100557;100558;100559 100555 4 HLQENGDR Unmodified 967.44716 0.44715637 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 6.9082 7.6408 2 9.6173E-05 1451 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 161.9 144.05 382670000 135790000 131810000 115080000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8801 1305 8582 163532;163533;163534 100560;100561;100562 100561 3 HLQIMELEGAQLPR Unmodified 1633.861 0.86101068 95 P04846 nlpA Lipoprotein 28 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.041 35.192 3 5.0819E-06 13970 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 106.17 95.23 154470000 20477000 11662000 14451000 2191100 2278600 3117900 7313900 10939000 10733000 5691700 6398600 6137000 3149900 4145800 3956700 0 0 0 12072000 12473000 9881600 2102400 2408300 2888600 8802 95 8583 163535;163536;163537;163538;163539;163540;163541;163542;163543;163544;163545;163546;163547;163548;163549;163550;163551;163552;163553;163554;163555 100563;100564;100565;100566;100567;100568;100569 100564 5 HLQLQQQQSDK Unmodified 1351.6844 0.68442653 1369 P31473 ravA ATPase RavA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.259 12.108 2 2.3627E-07 3173 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 163.38 154.92 88098000 0 6920500 8205900 0 0 0 12686000 13103000 13751000 0 0 0 5716200 7184300 4386400 0 0 0 5005400 4402100 6736700 0 0 0 8803 1369 8584 163556;163557;163558;163559;163560;163561;163562;163563;163564;163565;163566 100570;100571 100570 1 HLQQMQHSLGMTVGTVR Unmodified 1921.9615 0.96146978 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 2 2 3 21.24 21.516 3;4 1.7637E-06 6356 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 89.866 88.68 23971000 0 2268100 0 5834400 8085600 7782800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8804 114 8585 163567;163568;163569;163570;163571;163572;163573;163574 100572;100573;100574;100575;100576;100577 100574 6 HLQSEGR Unmodified 825.40931 0.4093143 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.001 10.112 2 0.0037308 1724 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 106.76 98.078 11055000 0 0 0 0 0 0 0 0 0 3747800 2990000 2725900 0 0 0 231670 168410 163180 0 0 0 479180 0 548550 8805 1980 8586 163575;163576;163577;163578;163579;163580;163581;163582 100578;100579;100580 100580 3 HLRPVAR Unmodified 847.51405 0.51405414 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 9.5367 10.371 2 0.0016291 2381 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.72 122.06 694350000 69768000 135590000 112460000 0 0 0 0 0 0 0 0 0 33572000 49494000 31049000 0 0 0 92095000 94101000 76223000 0 0 0 8806 92 8587 163583;163584;163585;163586;163587;163588;163589;163590;163591;163592 100581;100582;100583;100584;100585;100586;100587;100588;100589;100590;100591 100585 11 HLSEAEIDNYVR Unmodified 1444.6947 0.69465686 304 P0A729 yceF Maf-like protein YceF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 2 1 2 2 24.489 23.55 2;3 7.045E-31 10198 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 261.65 256.44 555270000 88961000 80119000 70865000 0 0 0 56250000 53135000 48772000 0 0 0 25897000 18773000 20436000 0 0 0 18311000 38840000 34907000 0 0 0 8807 304 8588 163593;163594;163595;163596;163597;163598;163599;163600;163601;163602;163603;163604;163605;163606;163607;163608;163609;163610;163611;163612;163613;163614;163615;163616 100592;100593;100594;100595;100596;100597;100598;100599;100600;100601;100602;100603;100604;100605;100606;100607 100606 14 HLSQEIPATPGIR Unmodified 1417.7678 0.76776223 1504 P38051 menF Isochorismate synthase MenF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 22.185 22.068 2 4.904E-06 8939 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.15 137.38 41742000 6978100 7048300 4355800 0 0 0 4194000 0 3657300 0 3271400 0 3237400 0 0 0 0 0 4453300 4545900 0 0 0 0 8808 1504 8589 163617;163618;163619;163620;163621;163622;163623;163624;163625 100608;100609 100609 2 HLSTEIIQAR Unmodified 1166.6408 0.6407708 207 P09158 speE Polyamine aminopropyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 2 2 1 2 1 1 17.328 18.006 2;3 8.2127E-06 6522 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 184.38 115.46 1323300000 271580000 284330000 278300000 542570 0 518680 65016000 39556000 40436000 0 0 0 42416000 51643000 52863000 0 0 0 68085000 63758000 64225000 0 0 0 8809 207 8590 163626;163627;163628;163629;163630;163631;163632;163633;163634;163635;163636;163637;163638;163639;163640;163641;163642;163643;163644;163645;163646 100610;100611;100612;100613;100614;100615;100616;100617;100618;100619;100620;100621;100622;100623;100624;100625;100626;100627 100615 18 HLTENDR Unmodified 883.41479 0.41479361 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 4.8335 5.7332 2 0.023043 1098 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 88.643 57.34 708220000 0 0 0 0 0 1968500 109440000 113560000 106720000 0 0 0 80606000 3951400 75147000 0 0 0 78355000 70827000 67653000 0 0 0 8810 1388 8591 163647;163648;163649;163650;163651;163652;163653;163654;163655;163656 100628 100628 0 HLTENDRR Unmodified 1039.5159 0.51590463 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 5.5105 6.3272 2 0.00044384 1388 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.94 62.647 325440000 47547000 50617000 47689000 0 0 0 0 32106000 35733000 0 0 0 55829000 0 0 0 0 0 0 55917000 0 0 0 0 8811 1388 8592 163657;163658;163659;163660;163661;163662;163663 100629;100630;100631;100632;100633;100634;100635 100633 7 HLTQVTPAGQEIIR Unmodified 1561.8576 0.85763986 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 21.668 21.568 2;3 1.5708E-14 6503 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 191.53 147.22 564030000 68659000 60191000 54243000 2103000 546020 755100 14880000 19313000 17649000 7643400 7399400 4435900 18502000 18013000 4328300 76303000 61602000 59075000 16793000 20180000 21009000 1772400 3958400 4672000 8812 515 8593 163664;163665;163666;163667;163668;163669;163670;163671;163672;163673;163674;163675;163676;163677;163678;163679;163680;163681;163682;163683;163684;163685;163686;163687;163688;163689;163690;163691;163692;163693;163694;163695;163696;163697;163698;163699;163700;163701;163702;163703;163704 100636;100637;100638;100639;100640;100641 100637 6 HLVDLYQQQGVEK Unmodified 1555.7995 0.79945628 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 22.32 21.918 2;3 1.7354E-61 9289 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 317.31 309.09 2318800000 379630000 389240000 376280000 0 0 0 280740000 257970000 263970000 0 1004700 0 52524000 47398000 45164000 0 0 0 74383000 74339000 76139000 0 0 0 8813 401 8594 163705;163706;163707;163708;163709;163710;163711;163712;163713;163714;163715;163716;163717;163718;163719;163720;163721;163722;163723;163724;163725;163726;163727;163728;163729 100642;100643;100644;100645;100646;100647;100648;100649;100650;100651;100652;100653;100654;100655;100656;100657;100658;100659;100660;100661;100662 100649 20 HLVEIFG Unmodified 813.43849 0.43848916 897 P0AEY5 mdaB Modulator of drug activity B yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.817 34.26 2 0.042568 16512 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 64.398 58.354 135930000 9201300 10245000 8366900 0 0 0 13222000 12528000 14598000 0 0 0 10225000 11792000 12277000 0 0 0 9949800 11642000 11880000 0 0 0 8814 897 8595 163730;163731;163732;163733;163734;163735;163736;163737;163738;163739;163740;163741 100663;100664;100665;100666;100667;100668;100669 100663 7 HLVHEVTSPQAFDGLR Unmodified 1804.922 0.92203104 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 24.111 23.412 2;3;4 4.7927E-05 10182 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 82.651 77.223 201750000 45619000 71642000 81453000 0 0 0 0 0 0 0 0 0 3039600 0 0 0 0 0 0 0 0 0 0 0 8815 225 8596 163742;163743;163744;163745;163746;163747;163748;163749;163750;163751 100670;100671;100672;100673;100674;100675 100674 3 HLVSPADALPGR Unmodified 1231.6673 0.6673199 309 P0A744 msrA Peptide methionine sulfoxide reductase MsrA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 2 2 2 23.465 22.62 2;3 1.0494E-08 8169 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 136.02 126.18 550840000 60654000 66829000 55412000 14845000 13159000 12091000 37189000 39610000 32794000 27995000 25229000 20759000 19431000 19199000 17080000 1712900 0 0 17160000 21719000 18924000 8069800 10400000 10575000 8816 309 8597 163752;163753;163754;163755;163756;163757;163758;163759;163760;163761;163762;163763;163764;163765;163766;163767;163768;163769;163770;163771;163772;163773;163774;163775;163776;163777;163778;163779;163780;163781;163782;163783 100676;100677;100678;100679;100680;100681;100682;100683;100684;100685;100686;100687;100688;100689;100690;100691;100692;100693;100694;100695;100696;100697;100698;100699;100700 100678 24 HLVVAINK Unmodified 892.54944 0.54943659 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 2 2 2 3 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 14.478 15.2 1;2 6.9288E-05 4976 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 167.23 114.55 1922900000 120010000 106880000 109410000 3830000 3341000 4428700 117830000 148350000 127750000 3119600 2553300 3129900 138090000 130400000 147570000 0 0 0 249700000 258290000 239070000 2366000 3564500 3231100 8817 1218 8598 163784;163785;163786;163787;163788;163789;163790;163791;163792;163793;163794;163795;163796;163797;163798;163799;163800;163801;163802;163803;163804;163805;163806;163807;163808;163809;163810;163811;163812;163813;163814;163815;163816;163817;163818;163819;163820;163821 100701;100702;100703;100704;100705;100706;100707;100708;100709;100710;100711;100712;100713;100714;100715;100716;100717;100718;100719;100720;100721 100704 19 HLWLEVK Unmodified 923.52289 0.52288749 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.787 24.577 2 0.00059316 10341 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.02 146.63 2521500000 122770000 121590000 112950000 847650 994020 1218500 222280000 241160000 235550000 1335800 1106400 0 228410000 218950000 197480000 0 0 0 290240000 267500000 257100000 0 0 0 8818 1189 8599 163822;163823;163824;163825;163826;163827;163828;163829;163830;163831;163832;163833;163834;163835;163836;163837;163838 100722;100723;100724;100725;100726;100727;100728;100729;100730;100731;100732;100733 100733 10 HLYACDR Unmodified 933.41269 0.41268512 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 10.916 11.615 2 0.0017267 2825 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.89 124.89 496920000 185100000 153330000 158490000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8819 1610 8600 163839;163840;163841 100734;100735;100736 100736 3 HMGWTEAADLIVK Oxidation (M) 1485.7286 0.72859953 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 5 4 1 3 1 3 2 4 3 3 4 34.521 33.113 2;3 3.2121E-06 17789 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 132.32 128.02 424430000 58013000 80878000 57551000 0 0 0 12950000 27609000 11549000 0 0 0 19677000 15928000 21637000 0 0 0 39343000 37542000 41750000 0 0 0 8820 179 8601 163842;163843;163844;163845;163846;163847;163848;163849;163850;163851;163852;163853;163854;163855;163856;163857;163858;163859;163860;163861;163862;163863;163864;163865;163866;163867;163868;163869;163870;163871;163872;163873;163874;163875;163876;163877 100737;100738;100739;100740;100741;100742;100743;100744;100745;100746;100747;100748;100749;100750;100751;100752;100753;100754;100755;100756;100757;100758;100759;100760;100761;100762 100756 53 25 HMGWTEAADLIVK Unmodified 1469.7337 0.7336849 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 4 4 3 1 2 2 4 5 3 4 4 3 1 1 5 5 4 1 39.288 37.666 2;3 4.9806E-13 17733 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 236.77 236.77 10348000000 1455400000 1297500000 1220300000 3780900 4588500 4668700 577250000 516780000 472610000 0 0 0 612910000 626530000 526870000 0 1934200 2214700 1089800000 1033700000 899830000 0 0 977060 8821 179 8601 163878;163879;163880;163881;163882;163883;163884;163885;163886;163887;163888;163889;163890;163891;163892;163893;163894;163895;163896;163897;163898;163899;163900;163901;163902;163903;163904;163905;163906;163907;163908;163909;163910;163911;163912;163913;163914;163915;163916;163917;163918;163919;163920;163921;163922;163923;163924;163925;163926;163927;163928;163929;163930;163931;163932;163933 100763;100764;100765;100766;100767;100768;100769;100770;100771;100772;100773;100774;100775;100776;100777;100778;100779;100780;100781;100782;100783;100784;100785;100786;100787;100788;100789;100790;100791;100792;100793;100794;100795;100796;100797;100798;100799;100800;100801;100802;100803;100804;100805;100806;100807;100808;100809;100810;100811;100812;100813 100794 48 HMLGLFQGIPGAR Unmodified 1395.7445 0.74452436 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 39.316 37.688 2;3 1.7441E-05 18386 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.2 136.5 150180000 17590000 17461000 14403000 0 0 0 6618100 7366400 9101300 0 0 0 12839000 9315300 11877000 0 0 0 14592000 15016000 14006000 0 0 0 8822 1399 8602 163934;163935;163936;163937;163938;163939;163940;163941;163942;163943;163944;163945;163946;163947;163948;163949;163950;163951;163952;163953;163954;163955 100814;100815;100816;100817;100818;100819;100820;100821;100822;100823;100824;100825;100826 100817 11 HMNADTDYSIAEAAFNK Oxidation (M) 1912.8261 0.82614132 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 4 4 3 3 4 4 29.743 28.404 2;3 8.3826E-14 13508 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.64 166.64 248950000 0 0 0 0 0 0 25563000 24289000 11253000 0 0 0 29913000 25135000 20718000 0 0 0 35134000 36236000 40713000 0 0 0 8823 895 8603 163956;163957;163958;163959;163960;163961;163962;163963;163964;163965;163966;163967;163968;163969;163970;163971;163972;163973;163974;163975;163976;163977;163978;163979;163980;163981;163982;163983;163984;163985;163986 100827;100828;100829;100830;100831;100832;100833;100834;100835;100836;100837;100838;100839 100828 408 13 HMNADTDYSIAEAAFNK Unmodified 1896.8312 0.8312267 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.031 30.691 2;3 2.714E-89 14405 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 418.9 418.54 3600700000 79944000 77370000 73005000 0 0 0 323400000 311800000 318330000 0 0 0 347180000 325680000 344430000 0 0 0 476740000 444500000 478350000 0 0 0 8824 895 8603 163987;163988;163989;163990;163991;163992;163993;163994;163995;163996;163997;163998;163999;164000;164001;164002;164003;164004;164005;164006;164007;164008;164009;164010 100840;100841;100842;100843;100844;100845;100846;100847;100848;100849;100850;100851;100852;100853;100854;100855;100856;100857;100858;100859;100860 100848 21 HMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSK Unmodified 4056.8258 0.82583033 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 52.442 51.189 3;4 3.499E-59 24911 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 239.06 239.06 1303200000 15547000 15904000 10476000 0 0 0 118890000 92887000 88760000 0 0 0 135110000 121060000 115920000 0 0 0 191410000 180680000 216570000 0 0 0 8825 895 8604 164011;164012;164013;164014;164015;164016;164017;164018;164019;164020;164021;164022;164023;164024;164025;164026;164027;164028;164029;164030;164031 100861;100862;100863;100864;100865;100866;100867;100868;100869;100870;100871;100872 100867 12 HMNPELVNR Unmodified 1108.5448 0.54476192 447 P0A8N0 matP Macrodomain Ter protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.015 13.652 2 0.00095424 4168 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 96.948 87.36 139810000 15109000 20199000 21275000 0 0 0 6560000 11541000 9686700 1757800 1092800 0 9792700 6440700 7152300 618940 708960 0 9141000 10473000 8262600 0 0 0 8826 447 8605 164032;164033;164034;164035;164036;164037;164038;164039;164040;164041;164042;164043;164044;164045;164046;164047 100873;100874 100874 2 HMNSTSYFYNHSSQWR Unmodified 2043.8646 0.86459251 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.806 21.005 3 1.0412E-18 8230 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 188 188 251070000 5092200 3994000 3844800 0 0 5511500 11147000 16119000 14189000 9755400 11656000 0 10043000 11437000 13753000 0 0 0 12838000 16979000 17305000 31018000 29361000 27026000 8827 205 8606 164048;164049;164050;164051;164052;164053;164054;164055;164056;164057;164058;164059;164060;164061;164062;164063;164064;164065 100875;100876;100877;100878;100879;100880;100881;100882;100883;100884;100885;100886;100887 100884 13 HMQIINEINTR Unmodified 1367.698 0.6979681 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 22.038 21.808 2;3 2.1085E-10 9064 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 192.12 185.96 1359900000 43079000 40253000 22399000 0 0 0 134210000 124050000 123490000 45815000 41089000 48128000 89662000 82930000 80023000 18053000 14527000 14750000 137520000 142400000 125320000 13221000 10325000 8681000 8828 30 8607 164066;164067;164068;164069;164070;164071;164072;164073;164074;164075;164076;164077;164078;164079;164080;164081;164082;164083;164084;164085;164086;164087;164088;164089;164090;164091;164092;164093;164094;164095;164096;164097;164098;164099;164100;164101;164102;164103;164104;164105;164106 100888;100889;100890;100891;100892;100893;100894;100895;100896;100897;100898;100899;100900;100901;100902;100903;100904;100905;100906;100907;100908;100909;100910;100911;100912;100913;100914;100915;100916;100917;100918;100919;100920;100921;100922;100923;100924;100925;100926;100927;100928 100912 30 HMSDETAR Unmodified 945.39743 0.39742898 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.0096 7.6274 2 0.00024649 1832 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 150.17 139.75 640500000 0 0 0 13254000 11529000 11030000 68066000 60419000 58384000 39034000 32743000 30721000 36678000 36429000 38255000 0 12444000 14158000 34230000 39397000 40551000 22418000 23359000 17405000 8829 595 8608 164107;164108;164109;164110;164111;164112;164113;164114;164115;164116;164117;164118;164119;164120;164121;164122;164123;164124;164125;164126 100929;100930;100931;100932;100933;100934;100935;100936;100937;100938 100932 10 HMSGDIDNFPR Unmodified 1287.5666 0.56661958 812 P0ADV5 yhbW Uncharacterized protein YhbW yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 2 1 1 1 1 2 1 2 19.445 19.939 2;3 0.00023319 7990 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.25 95.511 144740000 14129000 13384000 27508000 0 0 0 9684100 9302700 0 0 0 0 10858000 8242600 0 0 0 0 20643000 8560800 22429000 0 0 0 8830 812 8609 164127;164128;164129;164130;164131;164132;164133;164134;164135;164136;164137;164138;164139 100939;100940;100941;100942 100939 3 HMTADAAAHEVIEGQASALEELDDEYLK Unmodified 3055.4081 0.40805983 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 49.176 47.789 3;4 1.3329E-66 23165 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 256.75 255.5 5561700000 284670000 267330000 235760000 1506900 0 0 602960000 505000000 530110000 2290500 0 0 530810000 422220000 492200000 0 0 0 585140000 579060000 522660000 0 0 0 8831 192 8610 164140;164141;164142;164143;164144;164145;164146;164147;164148;164149;164150;164151;164152;164153;164154;164155;164156;164157;164158;164159;164160;164161;164162;164163;164164;164165 100943;100944;100945;100946;100947;100948;100949;100950;100951;100952;100953;100954;100955;100956;100957;100958;100959;100960;100961;100962;100963;100964 100951 22 HMTADAAAHEVIEGQASALEELDDEYLKER Unmodified 3340.5518 0.55176396 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.249 44.859 4 1.9028E-42 21822 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 223.15 223.15 1267500000 97846000 68749000 59400000 0 0 0 118010000 125890000 93430000 0 0 0 109580000 90159000 85049000 0 0 3845100 151600000 136540000 120260000 0 7136300 0 8832 192 8611 164166;164167;164168;164169;164170;164171;164172;164173;164174;164175;164176;164177;164178;164179 100965;100966;100967;100968;100969;100970;100971;100972;100973;100974;100975;100976;100977 100970 13 HMVFHPNEQYAYCVNELNSSVDVWELK Unmodified 3307.5067 0.50666844 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By matching By MS/MS 2 2 2 45.671 44.331 3;4 2.6898E-12 21768 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.31 131.9 138280000 57619000 39684000 40975000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8833 1610 8612 164180;164181;164182;164183;164184;164185 100978;100979;100980 100978 3 HMVHELVSNLR Oxidation (M) 1349.6874 0.68740341 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 4 4 4 3 3 4 4 4 3 15.297 16.097 2;3 2.4767E-06 6392 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 155.84 139.96 731110000 69336000 55721000 24564000 0 0 0 112250000 120970000 98239000 0 0 0 35596000 32478000 43175000 0 0 0 54218000 49222000 35353000 0 0 0 8834 399 8613 164186;164187;164188;164189;164190;164191;164192;164193;164194;164195;164196;164197;164198;164199;164200;164201;164202;164203;164204;164205;164206;164207;164208;164209;164210;164211;164212;164213;164214;164215;164216;164217;164218;164219;164220;164221;164222;164223;164224;164225;164226;164227;164228 100981;100982;100983;100984;100985;100986;100987;100988;100989;100990;100991;100992;100993;100994;100995;100996;100997;100998;100999;101000;101001;101002;101003;101004;101005 100987 192 25 HMVHELVSNLR Unmodified 1333.6925 0.69248879 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 2 2 2 3 2 2 2 2 16.887 17.635 2;3 3.299E-10 5891 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 155.84 145.13 3978100000 664020000 550620000 310940000 0 0 0 781360000 0 0 0 0 0 407840000 214540000 0 0 0 0 468370000 580360000 0 0 0 0 8835 399 8613 164229;164230;164231;164232;164233;164234;164235;164236;164237;164238;164239;164240;164241;164242;164243;164244;164245;164246;164247;164248;164249;164250;164251;164252;164253 101006;101007;101008;101009;101010;101011;101012;101013;101014;101015;101016;101017;101018;101019;101020;101021;101022;101023;101024;101025;101026;101027;101028;101029;101030;101031;101032 101029 25 HNAGAWFVDLLAER Unmodified 1597.8001 0.80012499 332 P0A7D1 pth Peptidyl-tRNA hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.027 48.62 3 1.5857E-08 23786 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 119.96 116.92 212390000 19619000 18781000 18025000 0 0 0 17135000 13573000 16217000 0 0 0 14170000 13445000 15762000 0 0 0 23756000 22393000 19518000 0 0 0 8836 332 8614 164254;164255;164256;164257;164258;164259;164260;164261;164262;164263;164264;164265 101033;101034;101035;101036;101037;101038;101039;101040;101041;101042;101043;101044 101040 12 HNALLIFDEVQTGVGR Unmodified 1767.9268 0.92678206 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 42.746 41.131 2;3 1.6798E-30 20145 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 279.62 234.03 1043100000 373670000 348270000 314300000 1372600 1341300 1748200 0 2387900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8837 1919 8615 164266;164267;164268;164269;164270;164271;164272;164273;164274;164275 101045;101046;101047;101048;101049;101050;101051;101052;101053 101047 9 HNALNAAAAVAVATEEGIDDEAILR Unmodified 2533.2772 0.27724408 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.763 49.441 3 2.8645E-15 23156 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.46 132.27 234250000 20910000 17754000 22392000 0 0 0 15927000 16353000 13561000 0 0 0 23667000 20553000 10192000 0 0 0 26019000 29692000 17230000 0 0 0 8838 1145 8616 164276;164277;164278;164279;164280;164281;164282;164283;164284;164285;164286;164287 101054;101055;101056;101057;101058;101059 101058 5 HNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLK Unmodified 3974.0466 0.046569432 584 P0AAB8 uspD Universal stress protein D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.508 54.064 5 6.5002E-14 26885 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.53 112.08 187580000 15212000 14252000 8552800 6275300 4821300 7909300 0 47857000 47469000 7074000 3873900 5220000 9772500 9293300 0 0 0 0 0 0 0 0 0 0 8839 584 8617 164288;164289;164290;164291;164292;164293;164294;164295;164296;164297;164298;164299;164300 101060 101060 1 HNDDYLSAYAHNDTMLVR Unmodified 2133.9538 0.95380145 777 P0ADA3 nlpD Murein hydrolase activator NlpD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.628 30.141 3 1.1125E-22 13563 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 191.4 190.5 570040000 68664000 71874000 54575000 1033400 1193900 966230 36703000 41217000 43145000 0 4128800 5805100 35785000 28894000 32366000 0 0 0 51711000 42327000 49654000 0 0 0 8840 777 8618 164301;164302;164303;164304;164305;164306;164307;164308;164309;164310;164311;164312;164313;164314;164315;164316;164317 101061;101062;101063;101064;101065;101066;101067;101068;101069;101070;101071;101072;101073 101072 13 HNDGLDYVPTDK Unmodified 1372.6259 0.62590859 1106 P15078 cstA Carbon starvation protein A yes yes 0 0 0 By MS/MS By MS/MS 1 1 18.971 19.571 2 1.4763E-08 7360 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.61 168.15 19273000 10345000 0 8928200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8841 1106 8619 164318;164319 101074;101075 101075 2 HNDGLDYVPTDKK Unmodified 1500.7209 0.72087161 1106 P15078 cstA Carbon starvation protein A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 14.152 14.855 3 0.00040714 3443 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 56.569 54.99 57818000 12434000 13000000 12123000 5527300 4862100 6756700 0 0 0 1477100 1638100 0 0 0 0 0 0 0 0 0 0 0 0 0 8842 1106 8620 164320;164321;164322;164323;164324;164325;164326;164327 101076;101077;101078 101078 3 HNDIDAIAFTGSTR Unmodified 1516.727 0.72701962 1225 P23883 puuC Aldehyde dehydrogenase PuuC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 27.134 26.23 2;3 1.3744E-08 11966 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 184.31 147.89 53597000 16933000 20382000 16282000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8843 1225 8621 164328;164329;164330;164331;164332;164333 101079;101080;101081;101082 101079 4 HNDLENVGYTAR Unmodified 1387.648 0.64804102 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 1 16.304 17.059 2;3 6.7073E-24 5994 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 285.83 271.17 1629900000 153370000 152980000 109200000 2121100 2257500 1812800 156320000 170700000 152210000 0 1588000 0 94811000 88632000 88684000 1430900 280420 0 194270000 135940000 121740000 0 1583600 0 8844 59 8622 164334;164335;164336;164337;164338;164339;164340;164341;164342;164343;164344;164345;164346;164347;164348;164349;164350;164351;164352;164353;164354;164355;164356;164357;164358;164359;164360;164361;164362;164363;164364;164365;164366;164367 101083;101084;101085;101086;101087;101088;101089;101090;101091;101092;101093;101094;101095;101096;101097;101098;101099;101100;101101;101102;101103;101104;101105;101106 101095 24 HNEALDVQVGIGGK Unmodified 1435.7419 0.7419414 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 23.767 22.97 2;3 7.6757E-35 9925 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 251.75 234.84 408440000 23265000 19287000 16837000 797240 0 0 31702000 28418000 35398000 34119000 27522000 27843000 10535000 17033000 15085000 12907000 9424600 10025000 20359000 23473000 26123000 7490300 4376000 6422900 8845 30 8623 164368;164369;164370;164371;164372;164373;164374;164375;164376;164377;164378;164379;164380;164381;164382;164383;164384;164385;164386;164387;164388;164389;164390;164391;164392;164393;164394;164395;164396;164397;164398;164399;164400;164401 101107;101108;101109;101110;101111;101112;101113;101114;101115;101116;101117;101118;101119;101120;101121;101122;101123;101124;101125;101126 101123 18 HNEEDPIFVR Unmodified 1254.5993 0.59929991 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 20.487 20.874 2;3 4.665E-17 8343 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 236.16 229.99 447690000 45782000 42719000 44211000 0 0 0 39397000 36004000 32264000 0 0 936620 39946000 31036000 31347000 0 0 0 34490000 40540000 29012000 0 0 0 8846 1550 8624 164402;164403;164404;164405;164406;164407;164408;164409;164410;164411;164412;164413;164414;164415;164416;164417;164418;164419;164420;164421;164422;164423;164424;164425;164426 101127;101128;101129;101130;101131;101132;101133;101134;101135;101136;101137;101138;101139;101140;101141;101142;101143;101144;101145;101146;101147;101148;101149 101134 21 HNEEYEKIEGCDDGVIMHLK Unmodified 2415.0835 0.083494993 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 1 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 26.172 24.964 3;4 2.9121E-10 11190 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 120.4 117.39 709570000 105160000 83128000 96873000 7201100 5064200 7494500 29415000 30822000 27170000 7484000 4520500 5482800 29805000 30648000 31571000 0 0 3950900 60818000 65695000 63946000 4404200 3829000 5086300 8847 1302 8625 164427;164428;164429;164430;164431;164432;164433;164434;164435;164436;164437;164438;164439;164440;164441;164442;164443;164444;164445;164446;164447;164448;164449;164450;164451;164452;164453;164454;164455;164456;164457;164458;164459;164460;164461 101150;101151;101152;101153;101154;101155;101156;101157;101158;101159;101160;101161;101162;101163;101164;101165 101160 16 HNEPYYPPVEPARPVGDLK Unmodified 2177.0906 0.090552927 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1 1 25.386 24.377 3;4 8.1931E-11 10776 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 132.9 130.68 360390000 149320000 113490000 80248000 0 0 0 0 2161900 0 0 0 0 2534000 0 0 0 0 0 5530200 0 7097800 0 0 0 8848 1173 8626 164462;164463;164464;164465;164466;164467;164468;164469;164470 101166;101167;101168;101169;101170 101169 5 HNFEGGK Unmodified 787.3613 0.36130147 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 7.6689 8.335 2 0.00070098 1839 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 147.16 147.16 1862800000 200160000 197710000 127510000 25657000 20749000 20855000 91305000 117200000 108750000 46661000 42321000 39664000 129610000 109100000 111120000 0 13460000 16727000 133620000 112810000 108710000 32213000 28672000 28178000 8849 503 8627 164471;164472;164473;164474;164475;164476;164477;164478;164479;164480;164481;164482;164483;164484;164485;164486;164487;164488;164489;164490;164491;164492;164493;164494;164495;164496;164497;164498;164499 101171;101172;101173;101174;101175;101176;101177;101178;101179;101180;101181;101182;101183;101184;101185;101186;101187;101188;101189;101190;101191;101192 101179 22 HNFPQAIAVEMEATAIAHVCHNFNVPFVVVR Unmodified 3516.7547 0.75471848 903 P0AF12 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 2 1 1 1 1 2 1 1 2 53.644 52.221 4;5 1.2195E-32 25940 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.64 175.66 596910000 23824000 17283000 20064000 0 1770200 4998200 238480000 28186000 35906000 0 0 0 19222000 13467000 77741000 0 0 0 24592000 23130000 68250000 0 0 0 8850 903 8628 164500;164501;164502;164503;164504;164505;164506;164507;164508;164509;164510;164511;164512;164513;164514;164515;164516 101193;101194;101195;101196;101197;101198;101199;101200 101193 7 HNGAPAFSPDGSK Unmodified 1283.5895 0.58946351 398 P0A855 tolB Protein TolB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.859 13.273 2 2.0868E-06 3259 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 133.05 126.9 59479000 11921000 7455000 0 0 0 0 5827200 10115000 0 7265900 5909200 5003300 0 0 0 1236500 0 0 0 0 0 0 4745800 0 8851 398 8629 164517;164518;164519;164520;164521;164522;164523;164524;164525 101201 101201 1 HNGEIVPLDDIMLR Unmodified 1620.8294 0.8293762 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 2 2 2 1 2 1 1 2 1 2 2 2 43.063 41.569 2;3 6.1534E-09 19282 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 182.08 180.92 274720000 0 0 0 558020 675150 656230 0 0 2899600 2267800 3601900 2320400 60996000 62685000 58740000 15129000 17129000 12584000 5432900 5317600 5505300 6944100 6572300 4706500 8852 647 8630 164526;164527;164528;164529;164530;164531;164532;164533;164534;164535;164536;164537;164538;164539;164540;164541;164542;164543;164544;164545;164546;164547;164548;164549;164550;164551;164552;164553 101202;101203;101204;101205;101206;101207;101208;101209;101210;101211;101212 101212 11 HNGHWTVELNSDSIPR Unmodified 1860.8867 0.88670816 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 2 1 1 24.359 23.893 3;4 9.8575E-10 7330 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 134.14 129.04 35389000 0 6058200 13325000 0 0 0 0 0 0 0 0 0 0 0 0 0 8719200 4028200 3258500 0 0 0 0 0 8853 1249 8631 164554;164555;164556;164557;164558;164559 101213;101214 101213 2 HNGPTALILSR Unmodified 1177.6568 0.65675521 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 21.026 21.358 2;3 5.2528E-08 8778 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 176.6 173.01 444150000 79277000 86064000 76448000 0 0 0 46814000 44244000 25788000 0 0 0 11879000 12487000 7544300 0 0 0 18480000 17840000 17282000 0 0 0 8854 1423 8632 164560;164561;164562;164563;164564;164565;164566;164567;164568;164569;164570;164571;164572;164573;164574;164575;164576;164577;164578;164579;164580;164581;164582 101215;101216;101217;101218;101219;101220;101221;101222;101223;101224;101225;101226;101227;101228;101229;101230;101231 101217 17 HNHALVFK Unmodified 964.52428 0.52428448 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.732 12.528 2 0.00053026 3347 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.06 94.394 328430000 29541000 27722000 17392000 0 756730 0 32457000 31311000 27582000 0 0 0 26845000 16050000 16616000 411420 0 0 35445000 33009000 33291000 0 0 0 8855 1348 8633 164583;164584;164585;164586;164587;164588;164589;164590;164591;164592;164593;164594;164595;164596 101232;101233;101234;101235 101232 4 HNIDGVIATNTTLDR Unmodified 1638.8325 0.83254733 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 24.642 23.427 3 2.3798E-06 7550 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 103.39 100.44 32537000 0 0 0 6078100 4943200 5600200 0 0 0 1918000 2352000 2497200 0 0 0 0 0 0 0 0 0 2833500 3369700 2945300 8856 335 8634 164597;164598;164599;164600;164601;164602;164603;164604;164605 101236;101237;101238;101239;101240 101240 5 HNISFAEVESK Unmodified 1259.6146 0.61461563 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 18.515 19.119 2;3 3.6018E-10 6825 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 211.64 206.74 807030000 53321000 61216000 58852000 0 0 790880 72386000 64314000 68744000 0 0 0 72609000 65677000 68724000 0 0 0 84096000 68970000 67333000 0 0 0 8857 253 8635 164606;164607;164608;164609;164610;164611;164612;164613;164614;164615;164616;164617;164618;164619;164620;164621;164622;164623;164624;164625;164626;164627;164628;164629;164630 101241;101242;101243;101244;101245;101246;101247;101248;101249;101250;101251;101252;101253;101254;101255;101256;101257;101258;101259;101260 101255 17 HNIVAIADIDTR Unmodified 1336.7099 0.709913 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 27.213 26.173 2;3 3.8937E-08 11937 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 159.94 135.1 823820000 202240000 221860000 167340000 1273500 0 2580400 0 0 0 0 0 0 15071000 13283000 12859000 0 0 0 69164000 62529000 55628000 0 0 0 8858 238 8636 164631;164632;164633;164634;164635;164636;164637;164638;164639;164640;164641;164642;164643;164644;164645;164646;164647;164648;164649;164650;164651 101261;101262;101263;101264;101265;101266;101267;101268;101269 101264 6 HNIVVCDSK Unmodified 1070.5179 0.51787847 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.277 12.077 2 3.6344E-06 3081 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 175.51 151.99 2089400000 285630000 232750000 236520000 2738300 0 0 173660000 154680000 143900000 0 0 4192900 120800000 123940000 115970000 0 0 0 168550000 146330000 179790000 0 0 0 8859 1872 8637 164652;164653;164654;164655;164656;164657;164658;164659;164660;164661;164662;164663;164664;164665 101270;101271;101272;101273;101274;101275;101276;101277;101278;101279;101280;101281 101271 12 HNLPHNSLNFVFHGGSGSTAQEIK Unmodified 2590.2677 0.26768244 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 5 1 5 5 5 5 4 5 5 5 5 25.225 24.199 2;3;4;5 3.7735E-50 10473 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 234.3 230.31 12931000000 847200000 985690000 534800000 1951100 0 0 1630200000 1776500000 1879100000 0 0 0 868850000 805500000 723710000 0 0 0 1047300000 883680000 946910000 0 0 0 8860 634 8638 164666;164667;164668;164669;164670;164671;164672;164673;164674;164675;164676;164677;164678;164679;164680;164681;164682;164683;164684;164685;164686;164687;164688;164689;164690;164691;164692;164693;164694;164695;164696;164697;164698;164699;164700;164701;164702;164703;164704;164705;164706;164707;164708;164709;164710;164711;164712;164713;164714;164715;164716;164717;164718;164719;164720;164721;164722;164723;164724 101282;101283;101284;101285;101286;101287;101288;101289;101290;101291;101292;101293;101294;101295;101296;101297;101298;101299;101300;101301;101302;101303;101304;101305;101306;101307;101308;101309;101310;101311;101312;101313;101314;101315;101316;101317;101318;101319;101320;101321;101322;101323;101324;101325;101326;101327;101328;101329;101330 101307 47 HNLQITK Unmodified 852.48175 0.48175096 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 2 1 1 1 11.074 11.92 2 0.00029996 2979 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 158.2 68.776 1246900000 0 147030000 153800000 0 0 0 127810000 118590000 127330000 0 0 0 83156000 79046000 106190000 0 0 0 96784000 111590000 95591000 0 0 0 8861 702 8639 164725;164726;164727;164728;164729;164730;164731;164732;164733;164734;164735;164736 101331;101332;101333;101334;101335;101336;101337;101338;101339;101340 101332 10 HNLTTLK Unmodified 825.47085 0.47085192 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.635 12.298 2 0.00085292 3019 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 143.12 48.859 1632800000 128530000 111200000 103510000 5541200 6121800 4320200 197920000 152170000 170240000 5841100 5040900 5788400 125980000 105420000 107250000 588380 0 0 130930000 136730000 121390000 2505600 3565100 2234400 8862 902 8640 164737;164738;164739;164740;164741;164742;164743;164744;164745;164746;164747;164748;164749;164750;164751;164752;164753;164754;164755;164756;164757;164758 101341;101342;101343;101344;101345;101346;101347;101348 101347 8 HNMALVTIEDLVAYR Unmodified 1743.8978 0.89779012 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.372 48.988 2;3 4.8312E-20 24172 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 252.21 248.54 1620300000 37450000 28168000 35105000 0 0 0 212110000 194390000 194370000 0 0 0 162170000 129730000 147850000 0 0 0 168480000 166510000 143940000 0 0 0 8863 348 8641 164759;164760;164761;164762;164763;164764;164765;164766;164767;164768;164769;164770;164771;164772;164773;164774;164775;164776;164777;164778;164779;164780;164781;164782 101349;101350;101351;101352;101353;101354;101355;101356;101357;101358;101359;101360;101361;101362;101363;101364;101365;101366;101367;101368;101369;101370;101371;101372 101354 24 HNMDDILQNVPNHNIK Unmodified 1900.9214 0.92137911 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 1 3 3 3 3 3 3 1 1 3 3 3 1 26.579 25.513 2;3;4 2.606E-32 11481 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 300.27 284.9 3354000000 188730000 202000000 163630000 989180 0 604170 245840000 236270000 235740000 0 0 0 325780000 311390000 297160000 0 812510 765610 393420000 373380000 375980000 0 0 1498600 8864 1283 8642 164783;164784;164785;164786;164787;164788;164789;164790;164791;164792;164793;164794;164795;164796;164797;164798;164799;164800;164801;164802;164803;164804;164805;164806;164807;164808;164809;164810;164811;164812;164813;164814;164815;164816;164817;164818;164819;164820;164821;164822 101373;101374;101375;101376;101377;101378;101379;101380;101381;101382;101383;101384;101385;101386;101387;101388;101389;101390;101391;101392;101393;101394;101395;101396;101397;101398;101399;101400;101401 101387 29 HNMDDILQNVPNHNIK Oxidation (M) 1916.9163 0.91629373 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 26.636 25.517 3 0.0086032 11524 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 45.438 41.776 90090000 6399100 7268400 4706700 0 0 0 7073800 6798600 8651800 0 0 0 10986000 6733200 10113000 0 0 0 0 11082000 10277000 0 0 0 8865 1283 8642 164823;164824;164825;164826;164827;164828;164829;164830;164831;164832;164833 101402;101403 101402 525 2 HNPEFTMMELYMAYADYK Unmodified 2252.9581 0.95808347 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.653 52.213 2;3 9.843E-25 24772 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 203.04 203.04 838760000 54865000 48098000 45210000 0 0 0 67348000 62784000 62726000 0 0 0 85984000 87294000 68975000 0 0 0 85298000 91007000 79173000 0 0 0 8866 448 8643 164834;164835;164836;164837;164838;164839;164840;164841;164842;164843;164844;164845;164846;164847;164848;164849;164850;164851;164852;164853;164854;164855;164856;164857 101404;101405;101406;101407;101408;101409;101410;101411;101412;101413;101414;101415;101416;101417;101418;101419;101420;101421;101422;101423;101424 101420 21 HNPEHFR Unmodified 935.4362 0.43619775 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By MS/MS 1 7.3361 8.0834 2 0.076196 1683 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 56.091 38.243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8867 1575 8644 164858 101425 101425 1 HNPFLSLVPEQGVK Unmodified 1563.8409 0.84092717 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 2 2 37.032 35.235 2;3 5.892E-08 16833 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 167.71 163.25 409560000 43733000 37231000 30500000 1674100 0 0 26662000 23256000 25604000 2439000 1775300 1806600 21759000 24129000 20586000 0 0 0 47995000 45235000 48751000 3712600 2713100 0 8868 863 8645 164859;164860;164861;164862;164863;164864;164865;164866;164867;164868;164869;164870;164871;164872;164873;164874;164875;164876;164877;164878;164879;164880;164881;164882;164883;164884;164885;164886;164887;164888;164889;164890 101426;101427;101428;101429;101430;101431;101432;101433;101434;101435;101436;101437;101438;101439;101440;101441;101442;101443;101444;101445 101434 16 HNPQNPSWADR Unmodified 1320.5959 0.59594587 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 3 12.216 13.049 2;3 3.4922E-14 3644 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 208.63 204.77 4263400000 201440000 182370000 189540000 0 0 0 435920000 457020000 426770000 0 0 0 383610000 379030000 357740000 0 0 0 431080000 411800000 407120000 0 0 0 8869 1299 8646 164891;164892;164893;164894;164895;164896;164897;164898;164899;164900;164901;164902;164903;164904;164905;164906;164907;164908;164909;164910;164911;164912;164913;164914;164915 101446;101447;101448;101449;101450;101451;101452;101453;101454;101455;101456;101457;101458;101459;101460;101461;101462;101463;101464 101449 19 HNPQNPSWADRDR Unmodified 1591.724 0.72399993 1299 P27302 tktA Transketolase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 3 3 3 2 2 3 11.399 12.238 2;3;4 3.2044E-40 3057 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 287.41 277.46 3165400000 193050000 218330000 204560000 0 2671100 0 387380000 305060000 336110000 0 0 0 267740000 235510000 272650000 0 0 0 270640000 237600000 234070000 0 0 0 8870 1299 8647 164916;164917;164918;164919;164920;164921;164922;164923;164924;164925;164926;164927;164928;164929;164930;164931;164932;164933;164934;164935;164936;164937;164938;164939;164940;164941;164942;164943;164944;164945;164946;164947;164948;164949;164950 101465;101466;101467;101468;101469;101470;101471;101472;101473;101474;101475;101476;101477;101478;101479;101480;101481;101482;101483;101484;101485;101486;101487;101488;101489;101490;101491 101485 27 HNPTDPTWYDR Unmodified 1400.6109 0.61092723 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 2 2 1 2 2 2 19.483 19.954 2;3 1.7876E-05 7642 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.66 138.66 319080000 57604000 53552000 54284000 0 0 0 37501000 32999000 29941000 0 0 0 8031400 9937500 3056300 0 0 0 11574000 12372000 8226200 0 0 0 8871 1423 8648 164951;164952;164953;164954;164955;164956;164957;164958;164959;164960;164961;164962;164963;164964;164965;164966;164967;164968;164969;164970;164971;164972;164973 101492;101493;101494;101495;101496;101497;101498;101499;101500;101501;101502 101499 7 HNPTDPTWYDRDR Unmodified 1671.739 0.73898129 1423 P33570 tktB Transketolase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 1 1 2 15.588 16.369 2;3 5.9856E-06 5339 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 115.57 115.57 649510000 105550000 110370000 100390000 0 0 0 82473000 84710000 74313000 0 0 0 12303000 12253000 12691000 0 0 0 17849000 17156000 19462000 0 0 0 8872 1423 8649 164974;164975;164976;164977;164978;164979;164980;164981;164982;164983;164984;164985;164986;164987;164988;164989;164990;164991;164992;164993 101503;101504;101505;101506;101507;101508;101509;101510;101511;101512;101513;101514;101515;101516;101517;101518;101519;101520;101521 101519 19 HNSEIGFAK Unmodified 1001.493 0.49304393 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.329 13.162 2 2.7934E-08 3524 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 197.66 151.78 1655700000 144270000 117480000 124790000 0 0 0 190910000 189350000 191520000 0 0 0 129690000 131260000 110490000 0 0 0 113470000 113360000 99117000 0 0 0 8873 56 8650 164994;164995;164996;164997;164998;164999;165000;165001;165002;165003;165004;165005 101522;101523;101524;101525;101526;101527;101528;101529;101530;101531;101532 101532 9 HNSGYSAAK Unmodified 933.43044 0.43044367 116 P05707 srlD Sorbitol-6-phosphate 2-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 5.3324 6.2184 2 1.813E-05 1407 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142.55 107.66 141440000 20060000 0 16643000 0 220860 0 37841000 32766000 33907000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8874 116 8651 165006;165007;165008;165009;165010;165011;165012 101533;101534;101535;101536;101537;101538 101537 6 HNTLGTEFK Unmodified 1045.5193 0.51925868 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 13.238 13.962 2 3.1935E-08 4232 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 196.88 185.11 4308500000 268540000 281290000 0 3982400 4053100 4153800 532550000 505940000 530720000 4819600 0 0 426680000 375050000 306750000 3378900 2923100 3277000 381930000 345470000 326980000 0 0 0 8875 876 8652 165013;165014;165015;165016;165017;165018;165019;165020;165021;165022;165023;165024;165025;165026;165027;165028;165029;165030;165031;165032;165033;165034;165035 101539;101540;101541;101542;101543;101544;101545;101546;101547;101548;101549;101550;101551;101552;101553;101554;101555 101542 17 HNTLLFVVGQDKPR Unmodified 1622.8893 0.88927434 1270 P25740 rfaG Lipopolysaccharide core biosynthesis protein RfaG yes yes 0 0 1 By MS/MS By MS/MS 1 1 26.498 24.573 3 4.5944E-06 9157 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 107.74 104.54 9953900 0 0 0 0 0 0 0 0 0 5543000 4410900 0 0 0 0 0 0 0 0 0 0 0 0 0 8876 1270 8653 165036;165037 101556;101557 101556 2 HNVAPIFICPPNADDDLLR Unmodified 2176.0735 0.073522654 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 1 44.942 43.38 2;3 6.3155E-30 21225 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 242.43 234.89 555000000 159640000 158250000 155900000 1672500 2457300 1852800 27249000 25775000 19228000 0 0 0 0 0 0 0 0 0 2970700 0 0 0 0 0 8877 404 8654 165038;165039;165040;165041;165042;165043;165044;165045;165046;165047;165048;165049;165050 101558;101559;101560;101561;101562;101563;101564;101565;101566 101561 7 HNVLNAK Unmodified 794.43989 0.43988615 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 1 1 2 1 1 1 10.13 10.775 2 1.0745E-08 2110 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 216.84 198.18 1516400000 85771000 58105000 57899000 1800000 1758100 1905800 55140000 42531000 41294000 95830000 89982000 92341000 103530000 79450000 74878000 36026000 45766000 49493000 105100000 124770000 104060000 58577000 56070000 54279000 8878 1057 8655 165051;165052;165053;165054;165055;165056;165057;165058;165059;165060;165061;165062;165063;165064;165065;165066;165067;165068;165069;165070;165071;165072;165073;165074;165075;165076;165077;165078;165079;165080;165081;165082;165083 101567;101568;101569;101570;101571;101572;101573;101574;101575;101576;101577;101578;101579;101580;101581;101582;101583;101584;101585;101586;101587;101588;101589;101590 101570 24 HNVPAGSESHFK Unmodified 1308.6211 0.62109799 653 P0ABE2 bolA Protein BolA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 1 1 2 2 2 2 1 10.621 11.408 2;3 3.9077E-06 2744 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 147.74 133.63 1714300000 30113000 31617000 29437000 2601000 3274000 0 227430000 198530000 211740000 6455400 3120500 0 18396000 246100000 201690000 0 0 0 253600000 237720000 12448000 0 0 0 8879 653 8656 165084;165085;165086;165087;165088;165089;165090;165091;165092;165093;165094;165095;165096;165097;165098;165099;165100;165101;165102;165103;165104;165105;165106 101591;101592;101593;101594;101595;101596;101597;101598;101599;101600;101601;101602 101595 12 HPADQVIPQQDPR Unmodified 1499.7481 0.74808942 393 P0A840 surE 5'/3'-nucleotidase SurE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 14.274 15.05 2 1.275E-05 4993 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.89 117.59 48046000 6019300 4153800 5652600 0 0 0 4600900 0 4476300 0 0 0 3694100 2547900 3466700 0 0 0 4828400 4674200 3931600 0 0 0 8880 393 8657 165107;165108;165109;165110;165111;165112;165113;165114;165115;165116;165117 101603;101604;101605;101606;101607;101608 101605 6 HPAGEPLK Unmodified 847.4552 0.45520186 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 2 1 2 2 1 1 2 10.117 10.935 2 0.033002 2433 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 71.342 71.342 277790000 40720000 38430000 38275000 0 0 0 11777000 21422000 0 0 0 0 30981000 0 32783000 0 0 0 32521000 1566000 29315000 0 0 0 8881 1784 8658 165118;165119;165120;165121;165122;165123;165124;165125;165126;165127;165128;165129;165130;165131 101609;101610;101611;101612;101613;101614;101615 101610 1 HPAVPVDVVHR Unmodified 1224.6727 0.67273963 533 P0A9L3 fklB FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 15.009 15.663 2;3 1.8475E-07 4871 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 186.76 179.87 8805700000 612010000 641350000 447660000 3574100 3740600 0 835900000 771900000 838070000 0 3881700 2546200 694070000 616780000 520090000 2915300 1990200 1946600 903720000 923510000 977560000 2426400 0 0 8882 533 8659 165132;165133;165134;165135;165136;165137;165138;165139;165140;165141;165142;165143;165144;165145;165146;165147;165148;165149;165150;165151;165152;165153;165154;165155;165156;165157;165158;165159;165160;165161;165162;165163;165164 101616;101617;101618;101619;101620;101621;101622;101623;101624;101625;101626;101627;101628;101629;101630;101631;101632;101633;101634;101635;101636;101637;101638;101639;101640;101641;101642;101643;101644 101642 23 HPDTLLAAR Unmodified 992.54033 0.54032847 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 14.444 15.092 2 5.5419E-08 4819 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.31 157.49 2840000000 184950000 199220000 175050000 0 0 0 253040000 274830000 240500000 1891500 1545800 1317800 231140000 227600000 225930000 0 0 0 295640000 252250000 272760000 1278300 0 1073000 8883 1137 8660 165165;165166;165167;165168;165169;165170;165171;165172;165173;165174;165175;165176;165177;165178;165179;165180;165181;165182 101645;101646;101647;101648;101649;101650;101651;101652;101653;101654;101655 101652 11 HPEALAK Unmodified 764.41809 0.41808807 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 1 1 2 2 2 1 1 1 1 8.2019 9.0704 2 0.00085673 2303 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.02 114.49 1316400000 99519000 121500000 67696000 1869300 2005400 0 197230000 270790000 233990000 0 0 0 37194000 50642000 23532000 0 0 0 64336000 70003000 76083000 0 0 0 8884 1086 8661 165183;165184;165185;165186;165187;165188;165189;165190;165191;165192;165193;165194;165195;165196;165197;165198;165199;165200;165201 101656;101657;101658;101659;101660;101661;101662;101663;101664;101665;101666;101667;101668 101662 12 HPEGEFSVDK Unmodified 1143.5197 0.51965261 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.847 13.495 2 0.00032019 4029 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.76 110.76 553520000 31591000 35089000 32688000 0 0 0 65989000 71910000 66138000 11193000 9286200 8038300 34462000 33226000 34914000 4420200 0 0 39152000 39600000 35826000 0 0 0 8885 1916 8662 165202;165203;165204;165205;165206;165207;165208;165209;165210;165211;165212;165213;165214;165215;165216;165217 101669;101670;101671;101672;101673;101674 101671 6 HPEIGDVR Unmodified 921.46683 0.46682918 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.452 13.06 2 0.00067698 3675 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 127.84 101.73 2061500000 469210000 0 503720000 2561700 1966400 0 280430000 247500000 267890000 2353600 2232900 2284100 0 0 0 0 0 0 0 0 275460000 2457400 3395800 0 8886 1194 8663 165218;165219;165220;165221;165222;165223;165224;165225;165226;165227;165228;165229;165230 101675;101676;101677 101677 3 HPEIGGLLTFGIPAFK Unmodified 1695.9348 0.93482755 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.072 50.824 2;3 5.9779E-31 25081 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 240.8 239.54 741540000 143280000 138270000 122910000 0 0 0 45734000 51651000 53823000 0 0 0 28035000 27489000 22168000 0 0 0 37797000 37299000 33081000 0 0 0 8887 219 8664 165231;165232;165233;165234;165235;165236;165237;165238;165239;165240;165241;165242;165243;165244;165245;165246;165247;165248;165249;165250;165251;165252;165253;165254 101678;101679;101680;101681;101682;101683;101684;101685;101686;101687;101688;101689;101690;101691;101692;101693;101694 101682 16 HPEITTVPYDSYQNAK Unmodified 1861.8846 0.88464248 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 23.664 22.934 2;3 2.5011E-49 9829 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 336.79 330.95 2735700000 451740000 417440000 369800000 0 0 0 155410000 169630000 173570000 0 0 0 144360000 182890000 158320000 0 0 0 166900000 167350000 178320000 0 0 0 8888 1349 8665 165255;165256;165257;165258;165259;165260;165261;165262;165263;165264;165265;165266;165267;165268;165269;165270;165271;165272;165273;165274;165275;165276;165277;165278 101695;101696;101697;101698;101699;101700;101701;101702;101703;101704;101705;101706;101707;101708;101709;101710;101711;101712;101713;101714;101715;101716;101717;101718 101710 24 HPEKYPQLTIR Unmodified 1380.7514 0.75138388 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 2 2 2 1 1 1 2 1 1 1 1 2 1 16.251 16.87 2;3 0.00050349 6065 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 72.958 68.841 404790000 0 0 10791000 1371100 0 0 100820000 86749000 98144000 0 10806000 18804000 15209000 18377000 16760000 1169200 1228700 1614100 21331000 1611000 0 0 0 0 8889 1717 8666 165279;165280;165281;165282;165283;165284;165285;165286;165287;165288;165289;165290;165291;165292;165293;165294;165295;165296;165297;165298 101719;101720;101721;101722;101723;101724;101725;101726;101727;101728;101729;101730 101722 12 HPELITPDSPTQR Unmodified 1489.7525 0.75250609 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 18.042 18.615 2;3 3.7578E-07 7191 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 149.33 131.06 294010000 21691000 23114000 21693000 0 0 0 31056000 32038000 23448000 0 0 0 18625000 17277000 15126000 0 0 1333400 28754000 31378000 28481000 0 0 0 8890 1102 8667 165299;165300;165301;165302;165303;165304;165305;165306;165307;165308;165309;165310;165311;165312;165313;165314;165315;165316;165317;165318;165319;165320;165321;165322;165323 101731;101732;101733;101734;101735;101736;101737;101738;101739;101740;101741;101742;101743;101744 101731 13 HPELTDMVIFR Unmodified 1356.686 0.68600643 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 1 1 2 2 1 1 1 39.201 37.569 2;3 3.4302E-06 18368 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.16 166.16 3759500000 677620000 728340000 719020000 0 751800 991920 87678000 83653000 77034000 0 0 0 118720000 357470000 353160000 0 0 0 185770000 186330000 182920000 0 0 0 8891 179 8668 165324;165325;165326;165327;165328;165329;165330;165331;165332;165333;165334;165335;165336;165337;165338;165339;165340;165341;165342;165343;165344 101745;101746;101747;101748;101749;101750;101751;101752;101753;101754;101755;101756;101757;101758;101759;101760;101761;101762;101763;101764;101765;101766;101767;101768;101769;101770;101771;101772;101773;101774;101775;101776;101777;101778;101779;101780;101781;101782;101783;101784;101785;101786 101761 42 HPELTDMVIFR Oxidation (M) 1372.6809 0.68092105 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 3 1 1 1 1 2 1 3 1 38.081 36.496 2;3 0.00080285 18412 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.662 72.774 57261000 16251000 6618000 0 0 0 0 1563800 0 1954100 0 0 0 4433200 4771700 3493000 0 0 0 13615000 4560500 0 0 0 0 8892 179 8668 165345;165346;165347;165348;165349;165350;165351;165352;165353;165354;165355;165356;165357;165358 101787;101788;101789;101790 101790 54 2 HPESLLAK Unmodified 893.49707 0.49706667 1533 P39377 iadA Isoaspartyl dipeptidase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.28 13.112 2 0.00044749 3735 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.55 97.247 218360000 19934000 26663000 19992000 0 0 0 23950000 21274000 18332000 0 0 0 13743000 10254000 12030000 0 0 0 16096000 19807000 16287000 0 0 0 8893 1533 8669 165359;165360;165361;165362;165363;165364;165365;165366;165367;165368;165369;165370 101791;101792;101793;101794 101791 4 HPFDGITDPWYNPGDVK Unmodified 1956.9006 0.90062689 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 42.399 40.102 2;3 1.5057E-10 19874 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.1 178.87 137940000 0 0 0 0 0 0 39760000 46929000 41966000 3600800 3452300 2227600 0 0 0 0 0 0 0 0 0 0 0 0 8894 722 8670 165371;165372;165373;165374;165375;165376;165377;165378;165379 101795;101796;101797;101798 101797 3 HPFEGVLHNMER Unmodified 1464.6932 0.69321707 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.263 21.821 3 1.2373E-06 6784 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 121.04 118.25 143060000 12949000 15064000 15505000 0 0 0 9444700 12100000 8997200 0 0 0 5086100 6137800 6520100 10509000 8951200 8499900 6771900 7475200 9047400 0 0 0 8895 222 8671 165380;165381;165382;165383;165384;165385;165386;165387;165388;165389;165390;165391;165392;165393;165394 101799;101800;101801 101799 3 HPFPGPGLGVR Unmodified 1132.6142 0.61416212 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 22.143 22.025 2;3 1.7722E-05 8612 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 138.83 125.05 4063200000 324010000 304390000 273420000 2293600 2661700 1731400 287110000 296260000 296750000 3020100 1762000 2172700 382150000 333420000 324800000 0 0 0 399520000 424130000 397050000 2906600 1909000 1729200 8896 86 8672 165395;165396;165397;165398;165399;165400;165401;165402;165403;165404;165405;165406;165407;165408;165409;165410;165411;165412;165413;165414;165415;165416;165417;165418;165419;165420;165421;165422;165423;165424;165425;165426;165427;165428;165429;165430 101802;101803;101804;101805;101806;101807;101808;101809;101810;101811;101812;101813;101814;101815;101816;101817;101818;101819;101820;101821;101822 101817 20 HPGLQVVPVVEQPEAGWR Unmodified 1997.0483 0.048294182 875 P0AEN1 fre NAD(P)H-flavin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 1 37.126 35.403 2;3 7.7586E-29 17043 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 204.13 198.65 1514500000 145100000 148850000 134290000 543650 416050 1345000 109220000 100300000 98776000 0 0 1487900 105960000 100770000 105820000 0 0 0 154700000 156580000 145920000 2105000 0 2355300 8897 875 8673 165431;165432;165433;165434;165435;165436;165437;165438;165439;165440;165441;165442;165443;165444;165445;165446;165447;165448;165449;165450;165451;165452;165453;165454;165455;165456;165457;165458;165459;165460 101823;101824;101825;101826;101827;101828;101829;101830;101831;101832;101833;101834;101835;101836;101837;101838;101839;101840;101841;101842;101843;101844;101845;101846 101838 24 HPGPLVVEGK Unmodified 1031.5764 0.57637963 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.239 14.105 2 0.00015063 4339 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 125.82 125.82 1329300000 145860000 124570000 116460000 0 0 0 116670000 95637000 102840000 0 0 0 96539000 99779000 88618000 0 0 0 126770000 114730000 100820000 0 0 0 8898 1143 8674 165461;165462;165463;165464;165465;165466;165467;165468;165469;165470;165471;165472 101847;101848;101849;101850;101851;101852;101853;101854;101855;101856;101857;101858 101850 12 HPHVELCDLLK Unmodified 1359.6969 0.69690547 610 P0AAS7 ybcJ Uncharacterized protein YbcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.652 26.504 3 1.6984E-05 12047 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 131.82 127.96 119530000 31330000 18977000 19844000 0 0 0 6982600 4658500 8009300 0 0 0 3013800 4223600 3919700 0 0 0 7130800 5547400 5893100 0 0 0 8899 610 8675 165473;165474;165475;165476;165477;165478;165479;165480;165481;165482;165483;165484 101859;101860;101861 101861 2 HPHVFADSSAENSSEVLAR Unmodified 2051.9661 0.96608069 896 P0AEY3 mazG Nucleoside triphosphate pyrophosphohydrolase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 18.98 19.542 3 5.5887E-14 7600 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 96.096 92.376 67155000 5349900 0 3765200 0 0 0 8522000 5140400 6036800 0 0 0 5178900 5434000 4647000 0 0 0 7176900 7708800 8195500 0 0 0 8900 896 8676 165485;165486;165487;165488;165489;165490;165491;165492;165493;165494;165495 101862;101863 101863 2 HPIYTHFLSQEAQDVIGQVHPQTAPAR Unmodified 3039.5315 0.5315017 831 P0AE37 astA Arginine N-succinyltransferase yes yes 0 0 0 By matching By MS/MS 1 1 37.266 35.833 4 1.2528E-05 17248 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 78.991 73.943 66719000 0 31544000 35176000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8901 831 8677 165496;165497 101864 101864 1 HPLAVSSLEELANGTFLPAIGEIDELDPK Unmodified 3074.5812 0.58119682 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.178 53.723 3 2.6595E-16 25490 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 145.34 139.91 606800000 72799000 64168000 63230000 4617800 0 0 0 31023000 26300000 3961500 4143000 0 51723000 58849000 0 0 0 0 0 111580000 94590000 6810100 7315200 5691500 8902 937 8678 165498;165499;165500;165501;165502;165503;165504;165505;165506;165507;165508;165509;165510;165511;165512 101865 101865 1 HPLFVTNVDDTR Unmodified 1412.7048 0.70482762 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.434 22.579 2 1.0477E-16 9383 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 205.18 192.14 985410000 53972000 48149000 42483000 954770 1474800 1482800 79759000 76639000 71670000 2142800 2033200 2517100 101770000 90364000 99623000 0 0 0 80112000 106870000 121580000 0 1810000 0 8903 1427 8679 165513;165514;165515;165516;165517;165518;165519;165520;165521;165522;165523;165524;165525;165526;165527;165528;165529;165530;165531 101866;101867;101868;101869;101870;101871;101872;101873;101874;101875 101873 10 HPLVMGNWK Unmodified 1080.5539 0.55387005 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.67 21.068 2 3.7236E-08 7909 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 195.85 162.49 4963900000 496740000 478690000 427810000 0 0 0 485030000 348380000 386810000 0 0 0 390510000 415450000 372230000 0 0 0 390040000 405490000 366770000 0 0 0 8904 399 8680 165532;165533;165534;165535;165536;165537;165538;165539;165540;165541;165542;165543 101876;101877;101878;101879;101880;101881;101882;101883;101884;101885;101886 101884 11 HPLVMGNWK Oxidation (M) 1096.5488 0.54878467 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.681 21.074 2 0.044298 7877 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 58.604 47.535 100140000 9898100 10143000 8150400 0 0 0 8243900 6483100 9974100 0 0 0 7768800 8728500 7501700 0 0 0 6768000 8585400 7897600 0 0 0 8905 399 8680 165544;165545;165546;165547;165548;165549;165550;165551;165552;165553;165554;165555 101887;101888 101888 2 HPNMLVR Unmodified 865.45924 0.45924138 1978 Q47710 yqjK Uncharacterized protein YqjK yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.518 13.138 2 0.1462 3258 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 45.45 35.144 88945000 0 0 3210700 0 0 0 20042000 18837000 19211000 6319800 5069200 3175200 0 0 0 0 0 0 4476400 3659500 4943200 0 0 0 8906 1978 8681 165556;165557;165558;165559;165560;165561;165562;165563;165564;165565 101889 101889 1 HPNQALGLHLEGPWLNLVK Unmodified 2135.164 0.16399264 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.239 43.824 3;4 1.8044E-29 21145 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 183.77 171.11 698600000 83473000 80504000 71265000 0 0 0 66718000 71426000 67864000 0 0 0 33278000 38768000 36826000 0 0 0 53123000 56185000 39169000 0 0 0 8907 904 8682 165566;165567;165568;165569;165570;165571;165572;165573;165574;165575;165576;165577;165578;165579;165580;165581;165582;165583;165584;165585;165586;165587;165588;165589 101890;101891;101892;101893;101894;101895;101896;101897;101898;101899;101900;101901;101902;101903;101904;101905;101906;101907;101908;101909;101910;101911;101912;101913 101900 24 HPQEGAAR Unmodified 864.42021 0.42021334 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 4.8778 5.7998 2 1.4793E-06 1241 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.56 160.62 5553200000 1961600000 1885800000 1619900000 3857700 3904600 4126400 0 8651400 8333900 0 0 0 17542000 21104000 18440000 0 0 0 0 0 0 0 0 0 8908 318 8683 165590;165591;165592;165593;165594;165595;165596;165597;165598;165599;165600 101914;101915;101916;101917;101918;101919;101920;101921;101922 101919 9 HPQEQLAAVAPLLCAGITTYSPLR Unmodified 2605.3686 0.36864204 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 51.961 50.755 2;3 3.7903E-40 24830 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 247.4 245.04 598850000 210690000 200120000 188040000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8909 1762 8684 165601;165602;165603;165604;165605;165606 101923;101924;101925;101926;101927 101926 5 HPQQEFLQVDTSK Unmodified 1555.7631 0.76307078 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 19.696 20.186 2;3 6.5181E-18 7846 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 247.29 240.76 169370000 14240000 13902000 12609000 0 0 0 17403000 15135000 15378000 0 0 0 12820000 12652000 12129000 0 0 0 15227000 13924000 13954000 0 0 0 8910 244 8685 165607;165608;165609;165610;165611;165612;165613;165614;165615;165616;165617;165618;165619;165620;165621;165622;165623;165624;165625;165626;165627;165628;165629;165630 101928;101929;101930;101931;101932;101933;101934;101935;101936;101937;101938;101939 101931 11 HPQRPYTLDYVR Unmodified 1543.7896 0.7895603 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 16.799 17.383 2;3 8.7818E-07 6268 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.28 116.23 1208000000 73740000 85162000 94803000 2400400 2442600 2644600 123930000 116330000 109470000 15967000 10852000 10048000 84647000 74115000 62448000 0 0 0 94977000 115020000 102370000 10757000 10473000 5446700 8911 651 8686 165631;165632;165633;165634;165635;165636;165637;165638;165639;165640;165641;165642;165643;165644;165645;165646;165647;165648;165649;165650;165651;165652;165653;165654;165655;165656;165657;165658;165659;165660;165661;165662;165663;165664;165665 101940;101941;101942;101943;101944;101945;101946;101947;101948;101949;101950;101951;101952;101953;101954;101955;101956;101957;101958;101959;101960;101961;101962 101945 23 HPSEIVNVGDEITVK Unmodified 1635.8468 0.84680041 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 1 2 2 28.023 26.814 2;3 1.3268E-46 12248 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 339.28 308.72 2666600000 347580000 328400000 295830000 3457300 3533400 5971600 169130000 142120000 154700000 11501000 12302000 6968800 179250000 148420000 134020000 10552000 10189000 11759000 227580000 220630000 215350000 4416500 12340000 10607000 8912 990 8687 165666;165667;165668;165669;165670;165671;165672;165673;165674;165675;165676;165677;165678;165679;165680;165681;165682;165683;165684;165685;165686;165687;165688;165689;165690;165691;165692;165693;165694;165695;165696;165697;165698;165699;165700;165701;165702;165703;165704;165705;165706;165707;165708 101963;101964;101965;101966;101967;101968;101969;101970;101971;101972;101973;101974;101975;101976;101977;101978;101979;101980;101981;101982;101983;101984;101985;101986;101987;101988;101989;101990;101991;101992;101993;101994;101995;101996;101997 101986 31 HPSETQER Unmodified 982.44682 0.44682202 581 P0AA97 yaeQ Uncharacterized protein YaeQ yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 5.2512 6.0819 2 0.00026106 831 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.09 122.85 77120000 7184200 7615400 7899100 0 0 0 16133000 15773000 15502000 0 0 0 7013300 0 0 0 0 0 0 0 0 0 0 0 8913 581 8688 165709;165710;165711;165712;165713;165714;165715 101998;101999;102000;102001 102000 3 HPTALTTHEMLYR Unmodified 1568.7769 0.7769467 327 P0A7B3 nadK NAD kinase yes yes 0 0 0 By MS/MS 1 17.106 17.854 2 0.011474 6353 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.977 55.391 3451500 0 0 3451500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8914 327 8689 165716 102002 102002 1 HPTFVEGDIR Unmodified 1169.5829 0.58292157 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.555 18.237 2 0.0004535 6662 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.07 85.734 225130000 49173000 55586000 53592000 0 0 0 16420000 12543000 11556000 0 0 0 4999100 3315800 4204200 0 0 0 4451900 4295600 4988800 0 0 0 8915 202 8690 165717;165718;165719;165720;165721;165722;165723;165724;165725;165726;165727;165728 102003;102004;102005;102006;102007;102008 102006 3 HPVCAYK Unmodified 873.41671 0.41670786 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 10.297 11.09 2 0.00547 2485 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.511 79.664 388990000 128030000 116920000 135130000 0 0 0 0 0 0 0 0 0 0 4441000 4463900 0 0 0 0 0 0 0 0 0 8916 1816 8691 165729;165730;165731;165732;165733 102009;102010;102011 102010 3 HPVTPWGVQTK Unmodified 1248.6615 0.66150624 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 18.328 18.704 2;3 5.4324E-20 6899 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 280.83 245.48 7035000000 926500000 965030000 840670000 6645700 5956100 9011700 322250000 301240000 323810000 27214000 23979000 24203000 355000000 361370000 325880000 15428000 13983000 13080000 693560000 739560000 673330000 20067000 23115000 24096000 8917 1620 8692 165734;165735;165736;165737;165738;165739;165740;165741;165742;165743;165744;165745;165746;165747;165748;165749;165750;165751;165752;165753;165754;165755;165756;165757;165758;165759;165760;165761;165762;165763;165764;165765;165766;165767;165768;165769;165770;165771;165772;165773;165774;165775 102012;102013;102014;102015;102016;102017;102018;102019;102020;102021;102022;102023;102024;102025;102026;102027;102028;102029;102030;102031;102032;102033;102034;102035;102036;102037;102038;102039;102040;102041;102042 102025 31 HPVVEQVLNEPFIANPLNLSPQR Unmodified 2610.3918 0.39182033 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.376 49.247 3 1.5609E-28 23894 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 181.61 173.91 290750000 18555000 16103000 15145000 0 0 0 16448000 17895000 21716000 0 4687700 0 21268000 17779000 21019000 14126000 10718000 11598000 25042000 28434000 30210000 0 0 0 8918 1230 8693 165776;165777;165778;165779;165780;165781;165782;165783;165784;165785;165786;165787;165788;165789;165790;165791 102043;102044;102045;102046;102047 102044 5 HPYLEDR Unmodified 928.44028 0.44028008 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.817 12.424 2 0.0012423 2805 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 133.47 94.663 2154100000 62945000 54376000 57453000 7849400 7902200 8592000 176140000 186400000 192880000 52118000 57048000 45810000 175670000 161640000 160670000 12748000 7666700 11361000 214220000 182640000 185780000 47489000 41427000 43254000 8919 644 8694 165792;165793;165794;165795;165796;165797;165798;165799;165800;165801;165802;165803;165804;165805;165806;165807;165808;165809;165810;165811;165812;165813;165814;165815 102048;102049;102050;102051;102052;102053;102054;102055;102056;102057;102058;102059;102060 102048 13 HPYTQALLR Unmodified 1097.5982 0.5981777 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 16.266 17.109 2 0.0057806 4402 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 73.26 69.275 84754000 18016000 21059000 23951000 8273600 7295900 6158200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8920 592 8695 165816;165817;165818;165819;165820;165821 102061;102062;102063 102062 3 HPYTQALLSATPR Unmodified 1453.7678 0.76776223 1463 P37313 dppF Dipeptide transport ATP-binding protein DppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 23.194 22.516 2;3 4.4753E-07 7169 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 108.72 106.08 99958000 25403000 24980000 23928000 6003700 6948800 7847100 0 0 0 0 0 783660 0 0 0 0 0 0 2331400 1732500 0 0 0 0 8921 1463 8696 165822;165823;165824;165825;165826;165827;165828;165829;165830;165831;165832;165833;165834;165835;165836 102064;102065;102066;102067;102068;102069;102070;102071;102072 102064 8 HQAANSSR Unmodified 869.41038 0.41037693 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 2.8143 3.7384 2 0.00022699 609 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.29 142.61 66444000 13190000 11402000 14899000 76896 111330 113140 0 0 0 0 0 0 2249700 2194600 1305900 0 0 0 6875300 6714000 7312000 0 0 0 8922 956 8697 165837;165838;165839;165840;165841;165842;165843;165844;165845;165846;165847;165848 102073;102074;102075;102076;102077;102078;102079 102078 7 HQAEAHAAIDTFTK Unmodified 1538.7478 0.74775506 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 3 3 4 7 8 5 3 2 5 23 20 21 4 2 2 14 14 14 18.129 18.27 2;3 7.5631E-35 3954 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 252.04 252.04 8066200000 128500000 110040000 118650000 3624300 0 0 18077000 16945000 15447000 662590000 615990000 626180000 71559000 62888000 61728000 843410000 594340000 681880000 73603000 66551000 64188000 1179500000 983200000 1067400000 8923 935 8698 165849;165850;165851;165852;165853;165854;165855;165856;165857;165858;165859;165860;165861;165862;165863;165864;165865;165866;165867;165868;165869;165870;165871;165872;165873;165874;165875;165876;165877;165878;165879;165880;165881;165882;165883;165884;165885;165886;165887;165888;165889;165890;165891;165892;165893;165894;165895;165896;165897;165898;165899;165900;165901;165902;165903;165904;165905;165906;165907;165908;165909;165910;165911;165912;165913;165914;165915;165916;165917;165918;165919;165920;165921;165922;165923;165924;165925;165926;165927;165928;165929;165930;165931;165932;165933;165934;165935;165936;165937;165938;165939;165940;165941;165942;165943;165944;165945;165946;165947;165948;165949;165950;165951;165952;165953;165954;165955;165956;165957;165958;165959;165960;165961;165962;165963;165964;165965;165966;165967;165968;165969;165970;165971;165972;165973;165974;165975;165976;165977;165978;165979;165980;165981;165982;165983;165984;165985;165986;165987;165988;165989;165990;165991;165992;165993;165994;165995;165996;165997;165998;165999;166000;166001;166002;166003;166004;166005;166006;166007;166008;166009;166010 102080;102081;102082;102083;102084;102085;102086;102087;102088;102089;102090;102091;102092;102093;102094;102095;102096;102097;102098;102099;102100;102101;102102;102103;102104;102105;102106;102107;102108;102109;102110;102111;102112;102113;102114;102115;102116;102117;102118;102119;102120;102121;102122;102123;102124;102125;102126;102127;102128;102129;102130;102131;102132;102133;102134;102135;102136;102137;102138;102139;102140;102141;102142;102143;102144;102145;102146;102147;102148;102149;102150;102151;102152;102153;102154;102155;102156;102157;102158;102159;102160;102161;102162;102163;102164;102165;102166;102167;102168;102169;102170;102171;102172;102173;102174;102175;102176 102130 96 HQDEVLAEAK Unmodified 1138.5619 0.56185177 922 P0AF98 lptF Lipopolysaccharide export system permease protein LptF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.159 12.766 2 0.00025135 2960 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 129.16 122.33 98492000 5010200 5367300 5248000 1371600 1521300 1771600 10303000 7484500 6897800 3544100 3235000 3115100 0 0 6742200 1211100 453350 0 10924000 9672100 9119500 1852300 1617700 2030200 8924 922 8699 166011;166012;166013;166014;166015;166016;166017;166018;166019;166020;166021;166022;166023;166024;166025;166026;166027;166028;166029;166030;166031 102177 102177 1 HQDLFAILGQLAER Unmodified 1609.8576 0.85763986 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 1 1 1 2 2 1 2 2 2 1 53.211 51.785 2;3 3.3651E-11 25277 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 164.88 160 730230000 44485000 53969000 42544000 1223400 984590 1516200 68005000 52765000 60686000 1417000 0 0 47395000 71361000 45435000 0 0 0 85535000 88850000 62707000 0 0 1352900 8925 1019 8700 166032;166033;166034;166035;166036;166037;166038;166039;166040;166041;166042;166043;166044;166045;166046;166047;166048;166049;166050;166051;166052;166053;166054 102178;102179;102180;102181;102182;102183;102184;102185;102186;102187;102188;102189;102190;102191;102192 102188 15 HQEETYR Unmodified 961.42536 0.42535829 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.8261 7.5262 2 0.0013092 1236 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.29 125.83 148020000 6531000 9037700 6502900 3923600 0 0 0 0 14339000 13124000 12987000 12876000 9131900 7050000 8601100 0 0 0 14645000 13124000 11458000 0 0 4692800 8926 201 8701 166055;166056;166057;166058;166059;166060;166061;166062;166063;166064;166065;166066;166067;166068;166069 102193;102194;102195;102196;102197 102195 4 HQFAQSLNYEIAK Unmodified 1547.7732 0.77324153 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 1 2 2 2 1 2 2 2 1 24.369 23.407 2;3 1.5578E-50 10430 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 310.85 304.56 2585700000 113710000 96762000 120130000 1358200 833540 0 299240000 282560000 255890000 10418000 18022000 11289000 246750000 219650000 254960000 1149300 0 0 227060000 218540000 205560000 0 0 1818700 8927 539 8702 166070;166071;166072;166073;166074;166075;166076;166077;166078;166079;166080;166081;166082;166083;166084;166085;166086;166087;166088;166089;166090;166091;166092;166093;166094;166095;166096;166097;166098;166099;166100;166101 102198;102199;102200;102201;102202;102203;102204;102205;102206;102207;102208;102209;102210;102211;102212;102213;102214;102215;102216;102217;102218;102219;102220;102221;102222;102223;102224 102204 27 HQGTFDVAR Unmodified 1029.4992 0.49919194 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.337 13.138 2 8.9274E-08 3789 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 185.72 145.15 21014000000 5105500000 5594800000 5623800000 16778000 14703000 15043000 694790000 625980000 635480000 1843000 1183300 0 407410000 413330000 343800000 0 0 0 517440000 491990000 510280000 0 0 0 8928 1217 8703 166102;166103;166104;166105;166106;166107;166108;166109;166110;166111;166112;166113;166114;166115;166116;166117;166118 102225;102226;102227;102228;102229;102230;102231;102232;102233;102234;102235;102236;102237 102227 13 HQINQFLADWLR Unmodified 1539.7946 0.79464568 810 P0ADU7 yqiB Uncharacterized protein YqiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 44.26 44.382 2;3 3.4312E-08 15838 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 162.36 130.04 65399000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21308000 24229000 19862000 0 0 0 0 0 0 8929 810 8704 166119;166120;166121;166122;166123;166124 102238;102239;102240;102241;102242 102241 4 HQKPVPALNQPGGIVEK Unmodified 1811.0054 0.0053667345 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 3 3 3 3 3 2 1 3 3 3 3 3 3 3 3 3 3 2 3 3 16.42 16.996 2;3;4 9.5468E-20 5850 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 242.4 238.23 5802700000 799550000 563170000 588850000 12722000 14703000 16991000 273830000 254180000 309050000 46190000 15393000 39367000 341780000 313730000 279410000 53150000 47469000 43027000 631760000 641730000 429000000 17300000 28123000 42283000 8930 1625 8705 166125;166126;166127;166128;166129;166130;166131;166132;166133;166134;166135;166136;166137;166138;166139;166140;166141;166142;166143;166144;166145;166146;166147;166148;166149;166150;166151;166152;166153;166154;166155;166156;166157;166158;166159;166160;166161;166162;166163;166164;166165;166166;166167;166168;166169;166170;166171;166172;166173;166174;166175;166176;166177;166178;166179;166180;166181;166182;166183;166184;166185;166186;166187;166188;166189 102243;102244;102245;102246;102247;102248;102249;102250;102251;102252;102253;102254;102255;102256;102257;102258;102259;102260;102261;102262;102263;102264;102265;102266;102267;102268;102269;102270;102271;102272;102273;102274;102275;102276;102277;102278;102279;102280;102281;102282;102283;102284;102285;102286;102287;102288;102289;102290;102291 102272 49 HQLALTGDEDR Unmodified 1253.6 0.60002819 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 3 3 1 1 1 1 13.613 14.445 2;3 1.1583E-10 4482 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 197.06 191.74 166420000 15809000 9953700 11445000 0 0 0 20659000 42271000 50365000 0 0 0 5098400 3875600 0 0 0 0 0 2650400 4294100 0 0 0 8931 64 8706 166190;166191;166192;166193;166194;166195;166196;166197;166198;166199;166200;166201;166202;166203 102292;102293;102294;102295;102296;102297;102298;102299 102295 7 HQLALTGDEDRLELEWHQALLR Unmodified 2642.3565 0.35649745 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 1 1 1 2 3 3 1 3 3 3 40.363 38.667 3;4;5 4.6569E-35 19294 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 214.35 211.59 3291900000 341050000 344930000 284280000 6646800 5446700 5683600 581800000 554800000 592210000 7148300 8283700 9257600 56474000 100590000 74383000 0 0 1581600 102430000 118770000 96161000 0 0 0 8932 64 8707 166204;166205;166206;166207;166208;166209;166210;166211;166212;166213;166214;166215;166216;166217;166218;166219;166220;166221;166222;166223;166224;166225;166226;166227;166228;166229;166230;166231;166232;166233;166234;166235;166236;166237;166238;166239;166240;166241;166242;166243;166244;166245;166246;166247;166248 102300;102301;102302;102303;102304;102305;102306;102307;102308;102309;102310;102311;102312;102313;102314;102315;102316;102317;102318;102319;102320;102321;102322;102323;102324;102325;102326;102327 102304 28 HQLEHILNEEHIAHEPR Unmodified 2101.0453 0.045334069 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 16.639 17.332 4 1.6076E-06 6188 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 91.475 88.236 63389000 9292900 9559400 7703900 0 0 0 0 8697700 0 2792600 0 0 3922900 4059600 3735700 0 0 0 0 5987900 7636800 0 0 0 8933 127 8708 166249;166250;166251;166252;166253;166254;166255;166256;166257;166258 102328;102329 102329 2 HQLENEAGR Unmodified 1052.4999 0.49992022 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 2 3 2 1 1 1 1 1 8.3654 9.233 2 1.1605E-05 1227 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.57 157.74 189430000 18848000 15929000 36666000 3523000 2960400 2900700 30179000 17501000 22668000 0 0 0 9541400 1864600 8159400 0 0 0 5050700 5119900 8522800 0 0 0 8934 1376 8709 166259;166260;166261;166262;166263;166264;166265;166266;166267;166268;166269;166270;166271;166272;166273;166274;166275;166276;166277;166278;166279 102330;102331;102332;102333;102334;102335;102336;102337;102338;102339;102340;102341;102342 102330 13 HQLMVEQLDNETWDAAADTVR Unmodified 2441.1281 0.128137 261 P0A6L9 hscB Co-chaperone protein HscB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.255 39.59 3 1.9778E-07 19174 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 108.08 107.94 387930000 40993000 28291000 29435000 0 0 0 24228000 25237000 23864000 0 0 0 29658000 29786000 25639000 0 0 0 45347000 44757000 40698000 0 0 0 8935 261 8710 166280;166281;166282;166283;166284;166285;166286;166287;166288;166289;166290;166291 102343;102344;102345;102346;102347;102348;102349;102350 102345 6 HQLVVTQLK Unmodified 1064.6342 0.63422886 1895 P77307 fetB Probable iron export permease protein FetB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 16.196 16.925 2 0.00067278 5983 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 104.2 99.79 46116000 0 0 0 0 0 0 5943300 7075600 7775000 0 0 1240100 2302900 3322200 3059600 0 0 0 3842300 6212100 4718400 0 623950 0 8936 1895 8711 166292;166293;166294;166295;166296;166297;166298;166299;166300;166301;166302 102351;102352;102353;102354;102355 102353 4 HQMPAWHLITADGQGITLVNIGVGPSNAK Unmodified 3024.5604 0.56035899 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.454 46.056 4 4.2585E-06 22447 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 82.339 80.334 232020000 18830000 14057000 19247000 0 0 0 16594000 18474000 16189000 0 0 0 21874000 18840000 16006000 0 0 0 24121000 24901000 22884000 0 0 0 8937 828 8712 166303;166304;166305;166306;166307;166308;166309;166310;166311;166312;166313;166314 102356;102357;102358 102356 3 HQPDVIGLQETK Unmodified 1363.7096 0.70957864 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 1 18.142 18.695 2;3 3.6681E-07 7046 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 155.48 133.79 688130000 62722000 56687000 59630000 0 0 0 56691000 52485000 57036000 0 0 0 57396000 49247000 48556000 0 2898300 0 81532000 70249000 32996000 0 0 0 8938 197 8713 166315;166316;166317;166318;166319;166320;166321;166322;166323;166324;166325;166326;166327;166328;166329;166330;166331;166332;166333;166334;166335;166336;166337;166338;166339 102359;102360;102361;102362;102363;102364;102365;102366;102367;102368;102369;102370;102371;102372;102373;102374;102375;102376;102377;102378;102379;102380;102381;102382 102365 24 HQPENLTLVVLSR Unmodified 1504.8362 0.83617614 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 1 33.03 31.311 2;3 5.4276E-06 12155 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 116.51 100.97 124780000 0 1997100 2685000 0 0 533340 13862000 13815000 10053000 9630900 10835000 9660200 8579900 7229200 6258100 0 0 0 4640200 5386800 5519900 4496000 6740600 2857200 8939 143 8714 166340;166341;166342;166343;166344;166345;166346;166347;166348;166349;166350;166351;166352;166353;166354;166355;166356;166357;166358;166359;166360;166361;166362;166363;166364;166365;166366;166367;166368 102383;102384;102385;102386;102387;102388 102385 5 HQPLLEQHVLYATGTTGNLISR Unmodified 2447.2921 0.29210628 305 P0A731 mgsA Methylglyoxal synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 2 1 3 3 3 3 3 3 3 3 3 1 33.301 31.831 2;3;4 5.7821E-28 15030 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 235.16 227.38 2254300000 214530000 204710000 199450000 2232500 2358100 1097200 221560000 226870000 183050000 0 0 0 131840000 157170000 128960000 0 0 0 187160000 189880000 202310000 0 0 1117900 8940 305 8715 166369;166370;166371;166372;166373;166374;166375;166376;166377;166378;166379;166380;166381;166382;166383;166384;166385;166386;166387;166388;166389;166390;166391;166392;166393;166394;166395;166396;166397;166398;166399;166400;166401;166402;166403;166404;166405;166406;166407;166408;166409;166410 102389;102390;102391;102392;102393;102394;102395;102396;102397;102398;102399;102400;102401;102402;102403;102404;102405;102406;102407;102408;102409;102410;102411;102412;102413;102414;102415;102416;102417;102418 102411 30 HQQGQPLSLPVHVADAFR Unmodified 1999.0388 0.038792128 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 1 2 2 3 3 3 3 34.283 32.795 2;3;4 3.6411E-45 15499 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 261.27 249.69 4446700000 542630000 516410000 547440000 0 0 0 500990000 528050000 438390000 0 1188600 0 124240000 126820000 290490000 0 0 0 291400000 292560000 246040000 0 0 0 8941 94 8716 166411;166412;166413;166414;166415;166416;166417;166418;166419;166420;166421;166422;166423;166424;166425;166426;166427;166428;166429;166430;166431;166432;166433;166434;166435;166436;166437;166438;166439;166440;166441;166442;166443;166444;166445 102419;102420;102421;102422;102423;102424;102425;102426;102427;102428;102429;102430;102431;102432;102433;102434;102435;102436;102437;102438;102439;102440;102441;102442;102443;102444;102445;102446;102447;102448;102449;102450;102451;102452 102444 33 HQQHLAQLPK Unmodified 1198.6571 0.65708956 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 11.372 12.225 3 0.01431 3204 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 53.124 31.468 104250000 32626000 23533000 30470000 0 0 0 0 0 0 0 0 0 6197600 7231600 4195600 0 0 0 0 0 0 0 0 0 8942 1213 8717 166446;166447;166448;166449;166450;166451 102453;102454 102454 2 HQVAAFMER Unmodified 1087.5233 0.5232982 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.555 16.25 2 0.001251 5608 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.355 85.218 86060000 7164900 8804900 10948000 994260 789180 798480 5099900 3247100 6665500 2407400 2659400 2089400 4579300 3888100 3576300 0 0 0 7308900 8057200 6982000 0 0 0 8943 1459 8718 166452;166453;166454;166455;166456;166457;166458;166459;166460;166461;166462;166463;166464;166465;166466;166467;166468;166469 102455;102456 102456 2 HQVALEINNSSFLHSR Unmodified 1850.9387 0.93874373 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 25.637 24.654 3 4.5671E-07 11011 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.34 99.93 106770000 0 0 0 2405400 0 0 0 0 0 0 0 0 14239000 14267000 11786000 0 0 0 21720000 21068000 21281000 0 0 0 8944 1789 8719 166470;166471;166472;166473;166474;166475;166476 102457;102458;102459;102460 102459 4 HQVALQVAMAEHLIECDDHDTAQQIIIDGLK Unmodified 3510.7235 0.72353751 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 49.611 48.209 4 3.6877E-09 22564 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 92.238 90.514 118960000 0 0 4378100 0 0 0 16385000 19440000 0 2802000 0 0 9981300 11466000 7489100 0 0 0 19850000 14578000 12587000 0 0 0 8945 717 8720 166477;166478;166479;166480;166481;166482;166483;166484;166485;166486 102461;102462 102462 2 HQVNILYTAPTAIR Unmodified 1595.8784 0.87837531 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 1 2 2 2 29.864 28.516 2;3 2.5825E-11 13178 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 211.46 204.08 2233700000 718280000 758770000 674810000 0 0 1233400 4556600 7180600 8218500 0 0 0 7068200 3435600 0 0 0 0 15068000 16521000 18598000 0 0 0 8946 1305 8721 166487;166488;166489;166490;166491;166492;166493;166494;166495;166496;166497;166498;166499;166500;166501;166502;166503;166504;166505;166506 102463;102464;102465;102466;102467;102468;102469;102470;102471;102472;102473 102468 8 HQVWQIEIFDEK Unmodified 1570.778 0.77799256 1942 P77781 menI 1,4-dihydroxy-2-naphthoyl-CoA hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 1 1 1 1 1 41.053 39.444 2;3 3.7529E-08 19289 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.67 157.89 205160000 47258000 42982000 50174000 0 0 0 7407400 8416300 6677900 0 0 0 11707000 6096000 6033500 0 0 0 4760200 6055700 7588200 0 0 0 8947 1942 8722 166507;166508;166509;166510;166511;166512;166513;166514;166515;166516;166517;166518;166519;166520;166521;166522 102474;102475;102476;102477;102478 102474 5 HQYGTIVEAAPNMTTVDGR Unmodified 2058.9793 0.97928792 2005 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 2 1 18.638 19.187 3 0.17063 7245 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 8.6005 4.649 77396000 0 5989300 0 0 0 0 8445400 8454200 8658900 0 0 0 0 0 4059400 0 0 0 12958000 20198000 8632500 0 0 0 + 8948 2005 8723 166523;166524;166525;166526;166527;166528;166529;166530;166531 102479 102479 1 HQYYDQAELDQLIHGSSSNEQDPR Unmodified 2829.259 0.25902783 760 P0AD01 dcuR Transcriptional regulatory protein DcuR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 33.332 32.337 4 0.00011534 10659 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 77.681 76.81 78459000 8025300 6366000 4527100 0 0 0 9904300 0 5797400 0 0 0 0 0 5133800 12392000 9614900 10997000 0 5701400 0 0 0 0 8949 760 8724 166532;166533;166534;166535;166536;166537;166538;166539;166540;166541 102480;102481;102482 102481 3 HRGPDWSGIYASDNAILAHER Unmodified 2364.1359 0.13593999 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 2 1 2 1 30.433 28.6 3;4 1.8246E-11 13479 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.74 129.31 597430000 60344000 53902000 0 0 0 0 152360000 159960000 148770000 7310200 8239200 6543000 0 0 0 0 0 0 0 0 0 0 0 0 8950 1191 8725 166542;166543;166544;166545;166546;166547;166548;166549;166550;166551;166552;166553;166554;166555 102483;102484;102485;102486;102487;102488;102489;102490;102491;102492 102489 10 HRGVICEK Unmodified 997.51273 0.51273351 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 10.439 10.561 2 3.7051E-06 1915 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 187.8 168.32 3144000000 0 0 0 0 0 0 0 0 0 224150000 210990000 175920000 0 0 0 1257800000 330660000 275890000 0 0 0 220400000 203160000 245060000 8951 458 8726 166556;166557;166558;166559;166560;166561;166562;166563;166564 102493;102494;102495;102496;102497;102498;102499;102500;102501 102497 9 HRLDVQFDNVEEAIAMSAMYAANHLK Unmodified 2972.4273 0.42729591 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.584 52.348 4 2.089E-31 24514 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 199.87 197.42 872970000 41326000 42586000 37147000 8994400 8781600 6064900 96584000 95872000 87900000 13179000 15361000 15715000 64899000 59136000 50573000 9388300 6212500 10646000 58234000 60963000 54686000 7835100 9024300 11862000 8952 1184 8727 166565;166566;166567;166568;166569;166570;166571;166572;166573;166574;166575;166576;166577;166578;166579;166580;166581;166582;166583;166584;166585;166586;166587;166588 102502;102503;102504;102505;102506;102507;102508;102509;102510;102511;102512;102513;102514;102515;102516;102517 102517 16 HRPEEMR Unmodified 953.45013 0.45013326 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 4.8988 5.7836 2 0.010824 1171 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.19 83.202 87214000 0 0 0 0 0 0 10158000 0 10995000 0 0 0 10589000 0 10789000 0 0 0 15768000 15641000 13275000 0 0 0 8953 1313 8728 166589;166590;166591;166592;166593;166594;166595 102518;102519;102520;102521;102522 102519 5 HRYEVNNMLLK Unmodified 1415.7344 0.73435361 337 P0A7E5 pyrG CTP synthase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 1 1 2 1 1 1 1 2 2 2 2 2 2 1 1 18.752 19.218 2;3 1.4853E-06 7418 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 87.667 64.199 547110000 7193600 40605000 30829000 0 0 1580300 9696900 9282100 9328100 2403700 2827800 1828100 69657000 71617000 47971000 0 0 0 113000000 61856000 63494000 1893100 2047300 0 8954 337 8729 166596;166597;166598;166599;166600;166601;166602;166603;166604;166605;166606;166607;166608;166609;166610;166611;166612;166613;166614;166615;166616;166617;166618;166619;166620;166621;166622 102523;102524;102525;102526;102527;102528;102529;102530;102531;102532;102533;102534;102535;102536;102537;102538;102539 102525 16 HSADEITVR Unmodified 1026.5094 0.50942227 1551 P41407 azoR FMN-dependent NADH-azoreductase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.987 12.779 2 5.8139E-08 3529 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 191.78 182.19 747610000 86607000 86547000 81581000 0 0 0 67428000 67388000 59207000 0 0 666300 46504000 40216000 36871000 0 0 0 55850000 62820000 55930000 0 0 0 8955 1551 8730 166623;166624;166625;166626;166627;166628;166629;166630;166631;166632;166633;166634;166635 102540;102541;102542;102543;102544;102545;102546 102541 7 HSATTAPDPLVK Unmodified 1235.651 0.65100113 1187 P21866 kdpE KDP operon transcriptional regulatory protein KdpE yes yes 0 0 0 By MS/MS By MS/MS 1 1 14.289 14.964 2 0.075231 4908 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 57.267 52.576 11551000 5055600 6495700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8956 1187 8731 166636;166637 102547;102548 102547 2 HSCAHLLGHAIK Unmodified 1342.6928 0.69282314 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.503 12.243 2 1.9469E-17 3380 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 222 184.81 226860000 16671000 22896000 25263000 0 0 0 24147000 18935000 21386000 0 742590 591890 16788000 13465000 18070000 0 0 0 15005000 14318000 18583000 0 0 0 8957 445 8732 166638;166639;166640;166641;166642;166643;166644;166645;166646;166647;166648;166649;166650;166651 102549;102550;102551;102552;102553;102554;102555;102556;102557;102558;102559;102560 102557 12 HSDIILKPLDGMGGASIFR Unmodified 2026.067 0.066980713 90 P04425 gshB Glutathione synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 2 3 3 3 3 3 41.86 40.156 2;3;4 3.9665E-29 20107 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 214.45 210.73 2105000000 178580000 188500000 188750000 0 626830 0 200350000 167100000 157390000 0 0 0 152110000 165320000 157320000 0 0 0 190790000 186190000 172000000 0 0 0 8958 90 8733 166652;166653;166654;166655;166656;166657;166658;166659;166660;166661;166662;166663;166664;166665;166666;166667;166668;166669;166670;166671;166672;166673;166674;166675;166676;166677;166678;166679;166680;166681;166682;166683;166684;166685;166686;166687 102561;102562;102563;102564;102565;102566;102567;102568;102569;102570;102571;102572;102573;102574;102575;102576;102577;102578;102579;102580;102581;102582;102583;102584;102585 102563 25 HSDWQRPTFAFEGK Unmodified 1704.8009 0.80085327 1183 P21513 rne Ribonuclease E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.336 25.051 3 4.8736E-05 11155 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.803 85.18 361670000 42371000 35997000 34563000 3585000 3260600 4207000 0 21171000 24944000 4523500 3209100 3484700 20258000 23004000 23199000 0 0 0 32599000 36926000 38252000 2055300 2096500 1965000 8959 1183 8734 166688;166689;166690;166691;166692;166693;166694;166695;166696;166697;166698;166699;166700;166701;166702;166703;166704;166705;166706;166707 102586;102587;102588;102589;102590;102591 102588 6 HSEYNPSSTER Unmodified 1305.5586 0.55855731 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.578 11.343 2 1.9728E-07 2153 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 166.19 161.22 155980000 13976000 11866000 8759500 12863000 16466000 12128000 10406000 11007000 9340000 0 0 0 3998100 5756600 0 0 0 0 6712400 4767200 6060200 6085100 6558400 9228300 8960 1587 8735 166708;166709;166710;166711;166712;166713;166714;166715;166716;166717;166718;166719;166720;166721;166722;166723;166724 102592;102593;102594;102595;102596;102597 102595 6 HSFISTLLGIK Unmodified 1214.7023 0.70230842 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 45.012 43.653 2;3 2.9571E-14 21652 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 211.27 177.47 1602500000 88308000 85544000 86013000 0 2290700 2012200 163220000 150850000 123160000 1154300 0 0 119030000 101510000 114120000 2225300 3994600 4117000 190220000 172820000 187260000 2577000 2128200 0 8961 1218 8736 166725;166726;166727;166728;166729;166730;166731;166732;166733;166734;166735;166736;166737;166738;166739;166740;166741;166742;166743;166744;166745;166746;166747;166748;166749;166750;166751;166752;166753;166754;166755;166756 102598;102599;102600;102601;102602;102603;102604;102605;102606;102607;102608;102609;102610;102611;102612;102613;102614;102615;102616;102617;102618;102619;102620;102621;102622 102605 25 HSFNEPHILAIAQAIAEER Unmodified 2145.0967 0.096700937 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 3 3 3 3 3 3 3 3 3 45.386 43.948 2;3;4 1.1057E-36 21812 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 269.51 265.94 2126700000 77051000 187900000 169780000 0 0 0 201140000 224870000 226740000 0 0 0 142390000 151020000 130360000 0 0 0 197610000 214580000 203280000 0 0 0 8962 1450 8737 166757;166758;166759;166760;166761;166762;166763;166764;166765;166766;166767;166768;166769;166770;166771;166772;166773;166774;166775;166776;166777;166778;166779;166780;166781;166782;166783;166784;166785;166786;166787;166788;166789;166790;166791;166792 102623;102624;102625;102626;102627;102628;102629;102630;102631;102632;102633;102634;102635;102636;102637;102638;102639;102640;102641;102642;102643;102644;102645;102646;102647;102648 102628 26 HSGITLLMEDLNDGLR Unmodified 1782.8934 0.89343302 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 1 1 1 2 2 2 2 2 1 40.5 39.035 3;4 2.4985E-14 22648 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.65 124.08 292120000 30101000 35874000 28710000 0 0 0 32472000 23708000 12417000 2022100 1483400 0 12779000 0 11866000 0 0 0 36446000 32107000 29946000 0 0 2194600 8963 198 8738 166793;166794;166795;166796;166797;166798;166799;166800;166801;166802;166803;166804;166805;166806;166807;166808;166809;166810;166811;166812;166813 102649;102650;102651;102652;102653;102654;102655;102656;102657;102658 102654 10 HSGQSWSGVPIIAANMDTVGTFSMASALASFDILTAVHK Unmodified 4016.9765 0.97645773 1623 P60560 guaC GMP reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.665 54.192 4 4.2232E-23 26732 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.63 150.32 506640000 57415000 52904000 53295000 0 0 0 30403000 21839000 30129000 0 0 0 32293000 35216000 35522000 0 0 0 57206000 53563000 46857000 0 0 0 8964 1623 8739 166814;166815;166816;166817;166818;166819;166820;166821;166822;166823;166824;166825 102659;102660 102659 2 HSHEHHADDEPCVVR Unmodified 1823.7758 0.7757775 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 10.325 11.14 2;3;4 1.4075E-35 2529 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 293.71 284.28 4878600000 263240000 146720000 111980000 0 0 0 674020000 558000000 674470000 0 0 0 437710000 380100000 402860000 0 0 0 425980000 428480000 375070000 0 0 0 8965 92 8740 166826;166827;166828;166829;166830;166831;166832;166833;166834;166835;166836;166837;166838;166839;166840;166841;166842;166843;166844;166845;166846;166847;166848;166849;166850;166851;166852;166853;166854;166855;166856;166857;166858;166859;166860;166861 102661;102662;102663;102664;102665;102666;102667;102668;102669;102670;102671;102672;102673;102674;102675;102676;102677;102678;102679;102680;102681 102663 21 HSICPSGK Unmodified 884.41744 0.41743614 534 P0A9L5 ppiC Peptidyl-prolyl cis-trans isomerase C yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 6.0869 6.9504 2 0.00079747 1202 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 122.74 112.44 173850000 0 20764000 17347000 0 0 0 0 42578000 33700000 0 0 0 11715000 10467000 17887000 0 0 0 5704400 5718400 7971100 0 0 0 8966 534 8741 166862;166863;166864;166865;166866;166867;166868;166869;166870;166871 102682;102683;102684;102685;102686;102687;102688;102689;102690;102691 102691 7 HSIEYLR Unmodified 916.47667 0.47666558 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.739 14.569 2 9.7394E-05 4692 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 173.85 145.32 946800000 125220000 127910000 95319000 751000 699830 0 67855000 68934000 62936000 1204000 0 0 47442000 58333000 49751000 0 0 0 76402000 82729000 81309000 0 0 0 8967 444 8742 166872;166873;166874;166875;166876;166877;166878;166879;166880;166881;166882;166883;166884;166885;166886 102692;102693;102694;102695 102694 4 HSLILSSLK Unmodified 996.59678 0.59678072 1293 P27242 waaU Lipopolysaccharide 1,2-N-acetylglucosaminetransferase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 22.953 22.167 2 0.017961 7697 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 65.224 62.691 19250000 0 0 0 0 0 0 5548700 0 6242900 2617200 4840700 0 0 0 0 0 0 0 0 0 0 0 0 0 8968 1293 8743 166887;166888;166889;166890 102696 102696 0 HSLMGVADALAISR Unmodified 1439.7555 0.75548298 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 37.354 35.109 3 6.1966E-06 13772 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 103.76 95.85 27918000 0 0 0 807510 0 0 8049600 5157800 4940900 3174500 2605400 3182200 0 0 0 0 0 0 0 0 0 0 0 0 8969 1980 8744 166891;166892;166893;166894;166895;166896;166897 102697 102697 1 HSQVFSTAEDNQSAVTIHVLQGER Unmodified 2652.2892 0.28920575 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 2 2 3 3 3 3 3 4 3 3 3 1 1 1 3 4 4 2 2 3 30.139 28.652 2;3;4 1.6507E-97 13378 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 402.21 384.8 12984000000 841470000 844190000 755400000 81433000 76139000 89617000 1189600000 1156200000 1026400000 472330000 420500000 434730000 602240000 647540000 678240000 14214000 5706100 7760600 1063300000 1082700000 1100900000 126800000 127100000 139370000 8970 293 8745 166898;166899;166900;166901;166902;166903;166904;166905;166906;166907;166908;166909;166910;166911;166912;166913;166914;166915;166916;166917;166918;166919;166920;166921;166922;166923;166924;166925;166926;166927;166928;166929;166930;166931;166932;166933;166934;166935;166936;166937;166938;166939;166940;166941;166942;166943;166944;166945;166946;166947;166948;166949;166950;166951;166952;166953;166954;166955;166956;166957;166958;166959;166960;166961;166962 102698;102699;102700;102701;102702;102703;102704;102705;102706;102707;102708;102709;102710;102711;102712;102713;102714;102715;102716;102717;102718;102719;102720;102721;102722;102723;102724;102725;102726;102727;102728;102729;102730;102731;102732;102733;102734;102735;102736;102737;102738;102739;102740;102741;102742;102743;102744;102745;102746;102747;102748;102749;102750;102751;102752;102753;102754 102726 57 HSQVFSTAEDNQSAVTIHVLQGERK Unmodified 2780.3842 0.38416877 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 25.241 24.161 4 4.5716E-05 9061 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 82.849 80.474 36670000 0 0 0 4016500 3034100 3854600 0 0 0 9303300 6834500 7257500 0 0 0 0 1358900 1010400 0 0 0 0 0 0 8971 293 8746 166963;166964;166965;166966;166967;166968;166969;166970 102755;102756;102757;102758;102759 102755 5 HSSLLGEMPQER Unmodified 1382.6612 0.66124824 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 2 1 2 2 2 1 1 2 2 2 2 2 2 1 1 21.381 21.603 2;3 2.4048E-17 8636 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 258.17 247.65 2172700000 162650000 160370000 319880000 1849300 2609600 1573400 84186000 124140000 211060000 1086800 0 494560 140060000 160160000 184660000 0 0 0 223620000 211700000 181170000 762790 0 641070 8972 1639 8747 166971;166972;166973;166974;166975;166976;166977;166978;166979;166980;166981;166982;166983;166984;166985;166986;166987;166988;166989;166990;166991;166992;166993;166994;166995;166996;166997;166998;166999;167000 102760;102761;102762;102763;102764;102765;102766;102767;102768;102769;102770;102771;102772;102773;102774;102775;102776;102777;102778 102770 19 HSTAEKPVFNR Unmodified 1284.6575 0.65748349 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 1 2 2 2 2 10.919 11.737 2;3 3.4918E-14 2723 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 253.26 250.86 2408300000 290950000 67277000 69589000 0 0 0 241140000 216290000 230580000 0 0 0 222710000 63053000 227020000 0 0 0 241060000 245740000 292870000 0 0 0 8973 63 8748 167001;167002;167003;167004;167005;167006;167007;167008;167009;167010;167011;167012;167013;167014;167015;167016;167017;167018;167019;167020;167021 102779;102780;102781;102782;102783;102784 102784 5 HSTPEQIDK Unmodified 1053.5091 0.50908792 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 10.453 11.131 2 9.7911E-08 2622 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 184.04 159.92 117490000 6031700 5387100 0 0 0 0 21957000 0 15613000 7315000 9275600 0 8724300 8633500 0 0 0 0 18441000 16115000 0 0 0 0 8974 188 8749 167022;167023;167024;167025;167026;167027;167028;167029;167030;167031 102785;102786;102787 102786 3 HSVELDSQGR Unmodified 1126.5367 0.53669966 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.038 11.906 2 9.6069E-32 3033 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 289.14 253.79 929590000 187000000 176880000 163880000 4867200 9317900 9475100 78258000 65101000 66497000 0 0 0 0 39352000 0 0 0 0 39035000 49247000 40672000 0 0 0 8975 219 8750 167032;167033;167034;167035;167036;167037;167038;167039;167040;167041;167042;167043;167044 102788;102789;102790;102791;102792;102793;102794;102795;102796;102797 102790 9 HSVSAEPR Unmodified 881.43553 0.43552905 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 5.0307 6.0528 2 0.0010156 910 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 113.5 80.146 52675000 0 0 0 17933000 15473000 14148000 2971300 0 0 0 0 0 0 986280 1162900 0 0 0 0 0 0 0 0 0 8976 114 8751 167045;167046;167047;167048;167049;167050 102798;102799;102800 102800 3 HSVSCLK Unmodified 829.41162 0.41162248 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 9.365 10.263 2 0.0010821 1094 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 116.54 106.24 535140000 0 136610000 129530000 11349000 0 12150000 0 0 0 0 0 0 45374000 30949000 29897000 0 0 0 46766000 47647000 44866000 0 0 0 8977 1935 8752 167051;167052;167053;167054;167055;167056;167057;167058;167059;167060;167061 102801;102802;102803;102804 102802 4 HSVSCLKVDPL Unmodified 1253.6438 0.64380726 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 23.78 22.962 2 0.1554 7348 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 41.029 37.916 7285900 0 0 0 2626800 2343100 2315900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8978 1935 8753 167062;167063;167064 102805 102805 1 HSWYKDEAPQAPWEGTTIPAYDGWSDDGK Unmodified 3306.453 0.45303619 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 42.824 41.034 3;4 4.9253E-16 20052 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 135.3 134.36 511740000 0 0 0 0 0 0 48049000 54971000 39686000 18974000 18883000 12371000 41031000 36872000 48210000 4223000 0 3215900 64423000 56984000 58537000 5313200 0 0 8979 723 8754 167065;167066;167067;167068;167069;167070;167071;167072;167073;167074;167075;167076;167077;167078;167079;167080;167081;167082;167083;167084;167085;167086;167087;167088;167089;167090;167091 102806;102807;102808;102809;102810;102811;102812;102813;102814 102811 9 HSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVK Unmodified 3969.7911 0.79108303 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 2 By matching By matching By MS/MS 1 1 1 45.919 43.75 4 0.14662 17242 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 20.23 19.589 12895000 0 0 0 0 0 0 0 0 0 3094100 0 4030300 0 0 0 0 0 0 0 0 0 0 0 5770800 8980 723 8755 167092;167093;167094 102815 102815 1 HTAIDGGTFQNEITDR Unmodified 1773.8282 0.82819023 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 25.667 24.549 2;3 2.6956E-13 10881 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 188.96 185.64 3902000000 197290000 205850000 199710000 0 0 0 475050000 435330000 462640000 0 1227600 1220600 299910000 268320000 280820000 0 0 0 378520000 359270000 336850000 0 0 0 8981 1437 8756 167095;167096;167097;167098;167099;167100;167101;167102;167103;167104;167105;167106;167107;167108;167109;167110;167111;167112;167113;167114;167115;167116;167117;167118;167119;167120 102816;102817;102818;102819;102820;102821;102822;102823;102824;102825;102826;102827;102828;102829;102830;102831;102832;102833;102834;102835 102828 15 HTAKPEFANNHFLQGQWR Unmodified 2180.0664 0.066403862 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.606 22.649 4 1.3797E-06 8319 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.657 91.247 136910000 0 0 6409500 0 0 0 0 0 0 15605000 15903000 17900000 0 8150000 7651300 0 0 0 17505000 16101000 15412000 5046200 5658000 5570600 8982 143 8757 167121;167122;167123;167124;167125;167126;167127;167128;167129;167130;167131;167132 102836;102837;102838;102839;102840;102841 102836 6 HTANEEK Unmodified 827.37735 0.37734547 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 3.0088 3.912 2 0.002297 613 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.78 114.78 22395000 3424300 2435700 2981600 0 0 52473 0 0 0 0 0 0 1571300 1479600 1049200 0 0 0 3304000 2472600 3624300 0 0 0 8983 33 8758 167133;167134;167135;167136;167137;167138;167139;167140;167141;167142 102842;102843;102844;102845;102846;102847 102847 6 HTAPLSSADR Unmodified 1053.5203 0.52032131 1612 P55135 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.621 11.418 2 0.00046156 2707 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.54 94.349 53152000 8716500 8875100 0 0 0 0 5838300 5550000 6380800 0 0 0 0 4347800 0 0 0 0 4807700 4103200 4532200 0 0 0 8984 1612 8759 167143;167144;167145;167146;167147;167148;167149;167150;167151 102848;102849;102850 102848 3 HTDAAVLR Unmodified 881.47191 0.47191456 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 2 1 1 1 1 11.161 11.891 2 0.00025828 2300 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 149.48 122.36 122640000 0 0 2124800 27778000 30667000 32601000 0 0 0 0 1922700 0 0 0 0 0 0 0 0 0 0 10043000 8456100 9046500 8985 1904 8760 167152;167153;167154;167155;167156;167157;167158;167159;167160;167161 102851;102852;102853;102854;102855 102854 5 HTEALGELTR Unmodified 1125.5778 0.57783619 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 1 1 2 1 2 2 1 15.333 16.107 2;3 5.1002E-05 5536 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.34 154.95 1722500000 262480000 266990000 169590000 853770 685440 669170 159810000 164710000 172070000 685140 0 0 73766000 77067000 68245000 0 0 0 101210000 99761000 103890000 0 0 0 8986 43 8761 167162;167163;167164;167165;167166;167167;167168;167169;167170;167171;167172;167173;167174;167175;167176;167177;167178;167179;167180;167181;167182;167183;167184;167185 102856;102857;102858;102859;102860;102861;102862;102863;102864;102865;102866;102867;102868;102869;102870 102864 14 HTEIDYINGFLLR Unmodified 1589.8202 0.82019173 527 P0A9J4 panE 2-dehydropantoate 2-reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 46.298 44.881 3 0.0019007 21772 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 64.64 61.866 25408000 0 3320500 2498800 0 0 0 6250300 0 0 0 0 0 3639700 2540000 2299700 0 0 0 0 0 4859500 0 0 0 8987 527 8762 167186;167187;167188;167189;167190;167191;167192 102871 102871 0 HTEVHNFIYQTR Unmodified 1543.7532 0.75317479 410 P0A894 rapZ RNase adapter protein RapZ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.669 16.514 3 0.036434 5738 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 42.209 39.259 112280000 21219000 20673000 0 683630 613610 0 11655000 12289000 10393000 0 0 0 7212300 6331100 4973000 0 0 0 6814400 5064300 4363300 0 0 0 8988 410 8763 167193;167194;167195;167196;167197;167198;167199;167200;167201;167202;167203;167204;167205 102872 102872 0 HTFDNFVEGK Unmodified 1192.5513 0.55128709 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.345 20.553 2 4.5668E-05 6511 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 137.95 131.78 172200000 18623000 9813500 10387000 3355200 3135600 2550900 10102000 9322700 9590600 11304000 10063000 10342000 5869700 6018700 7214500 0 0 0 11977000 11496000 5958100 5691700 4516100 4865300 8989 78 8764 167206;167207;167208;167209;167210;167211;167212;167213;167214;167215;167216;167217;167218;167219;167220;167221;167222;167223;167224;167225;167226 102873;102874;102875;102876;102877;102878;102879;102880 102875 6 HTHDDYQNYEYGYSVSDR Unmodified 2247.9094 0.90935368 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.421 20.836 3 1.0312E-13 8390 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 135.08 135.08 120600000 9333500 7372900 4481500 0 0 0 9965200 11950000 11518000 0 0 0 7605800 8218400 9055000 0 0 0 14182000 12058000 14859000 0 0 0 8990 1856 8765 167227;167228;167229;167230;167231;167232;167233;167234;167235;167236;167237;167238 102881;102882;102883 102882 3 HTIEVVVDR Unmodified 1066.5771 0.57710791 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.027 16.578 2 0.00068552 4375 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 103.87 99.19 178500000 11577000 13980000 11873000 1805600 1465100 1661300 0 9274600 9018700 7110600 6549500 5220300 6492600 7954100 6201300 18300000 17112000 19885000 6969900 7531700 0 3478400 0 5042000 8991 222 8766 167239;167240;167241;167242;167243;167244;167245;167246;167247;167248;167249;167250;167251;167252;167253;167254;167255;167256;167257;167258;167259 102884;102885;102886;102887;102888;102889;102890;102891 102885 8 HTIMVANLAPR Unmodified 1221.6652 0.66521141 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 1 1 2 1 22.944 22.297 2;3 1.2778E-05 9880 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.43 99.958 920670000 58849000 60108000 62096000 0 0 0 144730000 126380000 121120000 0 0 0 55823000 44700000 35872000 0 0 869960 71181000 72807000 66141000 0 0 0 8992 60 8767 167260;167261;167262;167263;167264;167265;167266;167267;167268;167269;167270;167271;167272;167273;167274;167275;167276 102892;102893;102894;102895;102896;102897;102898;102899;102900 102892 9 HTIPANIADR Unmodified 1106.5833 0.58325592 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 13.405 14.317 2;3 0.00017896 4426 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.21 112.5 1872100000 617450000 646950000 538540000 1565900 2046700 2087400 0 0 4981100 0 0 0 6822700 5335900 5029400 0 0 0 14058000 15252000 12019000 0 0 0 8993 1305 8768 167277;167278;167279;167280;167281;167282;167283;167284;167285;167286;167287;167288;167289;167290;167291;167292 102901;102902;102903;102904;102905;102906 102905 6 HTIQMLHDVLDAFAR Unmodified 1765.8934 0.89337344 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 3 3 3 1 2 2 4 4 4 1 1 1 3 4 3 2 2 1 45.619 44.142 2;3;4 6.3669E-36 21454 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 265.34 253.47 2132000000 23708000 27057000 18433000 0 1608500 0 160040000 175840000 170430000 26428000 33837000 34410000 178470000 181260000 135710000 7897100 5325300 9678400 289430000 329550000 264980000 23425000 19836000 14643000 8994 531 8769 167293;167294;167295;167296;167297;167298;167299;167300;167301;167302;167303;167304;167305;167306;167307;167308;167309;167310;167311;167312;167313;167314;167315;167316;167317;167318;167319;167320;167321;167322;167323;167324;167325;167326;167327;167328;167329;167330;167331;167332;167333;167334;167335;167336;167337;167338;167339;167340;167341;167342 102907;102908;102909;102910;102911;102912;102913;102914;102915;102916;102917;102918;102919;102920;102921;102922;102923;102924;102925;102926;102927;102928;102929;102930;102931;102932;102933;102934;102935;102936;102937;102938;102939;102940;102941;102942;102943;102944;102945;102946;102947;102948;102949;102950;102951 102932 45 HTITPQLSTEDNALLLIDLGK Unmodified 2291.2373 0.23727674 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 1 2 1 2 49.823 48.436 2;3 1.0143E-52 23548 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 263.45 261.09 333650000 87624000 74110000 61808000 0 0 0 9366600 7556600 7911800 0 0 0 13799000 10516000 8583700 0 0 0 19340000 14093000 18938000 0 0 0 8995 1107 8770 167343;167344;167345;167346;167347;167348;167349;167350;167351;167352;167353;167354;167355;167356;167357;167358;167359;167360 102952;102953;102954;102955;102956;102957;102958;102959;102960 102960 9 HTLAQALHR Unmodified 1045.5781 0.57811096 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.866 12.542 2 4.62E-16 3233 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 237.76 218.98 651590000 75509000 85448000 79351000 0 0 0 46498000 43392000 41248000 708210 716620 0 37792000 30039000 26224000 0 0 0 60661000 63647000 58988000 725090 641150 0 8996 444 8771 167361;167362;167363;167364;167365;167366;167367;167368;167369;167370;167371;167372;167373;167374;167375;167376 102961;102962;102963;102964;102965;102966;102967;102968;102969;102970;102971;102972 102970 12 HTLMLFGGIVPR Unmodified 1339.7435 0.74346173 1354 P30871 ygiF Inorganic triphosphatase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 41.425 39.821 3 0.00016656 19231 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.014 84.575 28798000 7395400 6926300 8402500 0 0 0 0 0 2936100 0 0 0 0 0 0 0 0 0 0 3137600 0 0 0 0 8997 1354 8772 167377;167378;167379;167380;167381 102973;102974;102975 102975 2 HTLVTVLEGLLR Unmodified 1349.8031 0.8030851 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 1 2 2 2 2 2 2 51.947 50.69 2;3 9.2283E-12 25082 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 225.66 215.88 3255600000 284290000 271450000 294960000 842650 1620200 933170 302800000 280120000 315590000 0 0 1609200 217150000 172950000 187470000 0 0 0 304800000 299140000 319870000 0 0 0 8998 158 8773 167382;167383;167384;167385;167386;167387;167388;167389;167390;167391;167392;167393;167394;167395;167396;167397;167398;167399;167400;167401;167402;167403;167404;167405;167406;167407;167408;167409;167410 102976;102977;102978;102979;102980;102981;102982;102983;102984;102985;102986;102987;102988;102989;102990;102991;102992;102993;102994;102995;102996;102997;102998;102999 102979 24 HTMDIAVEAGNLAQAIGR Unmodified 1865.9418 0.9417802 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 43.532 42.187 2;3 2.8501E-14 16609 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 151.38 143.25 125680000 5295600 0 5204900 0 0 0 4172200 2820000 3737000 0 5876900 0 4055400 3577800 4622400 20298000 15954000 17394000 4492000 5044400 4404000 0 8216400 10517000 8999 935 8774 167411;167412;167413;167414;167415;167416;167417;167418;167419;167420;167421;167422;167423;167424;167425;167426;167427;167428 103000;103001;103002;103003 103003 3 HTMIHEQITR Unmodified 1264.6346 0.63463956 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 1 2 2 2 2 1 2 2 2 2 1 1 2 2 2 1 1 11.784 12.442 2;3 6.1416E-17 3399 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 232.23 228.82 11130000000 2492100000 2308200000 2090800000 1599800 0 0 555440000 524460000 541110000 24022000 5516800 20858000 298040000 268810000 260460000 1036700 0 2698500 567620000 570340000 581670000 9307100 0 5695800 9000 657 8775 167429;167430;167431;167432;167433;167434;167435;167436;167437;167438;167439;167440;167441;167442;167443;167444;167445;167446;167447;167448;167449;167450;167451;167452;167453;167454;167455;167456;167457;167458;167459;167460;167461;167462;167463 103004;103005;103006;103007;103008;103009;103010;103011;103012;103013;103014;103015;103016;103017;103018;103019;103020;103021;103022;103023;103024;103025 103018 22 HTMIHEQITR Oxidation (M) 1280.6296 0.62955418 657 P0ABH7 gltA Citrate synthase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 3 2 2 1 1 1 2 2 2 2 2 2 2 2 3 10.985 11.838 2;3 2.1869E-05 2799 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.81 137.43 840700000 74924000 60252000 49494000 1015600 960170 1064800 156100000 139580000 115140000 0 0 0 10575000 10482000 11562000 0 0 0 33313000 33145000 143100000 0 0 0 9001 657 8775 167464;167465;167466;167467;167468;167469;167470;167471;167472;167473;167474;167475;167476;167477;167478;167479;167480;167481;167482;167483;167484;167485;167486;167487;167488;167489;167490;167491;167492 103026;103027;103028;103029;103030;103031 103027 360 6 HTNWADTVQEAK Unmodified 1398.6528 0.65279205 1859 P76422 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 16.387 17.192 2 0.018959 6259 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.83 67.47 41918000 0 0 0 0 0 0 5970900 5268800 4519600 0 0 0 4157300 2964300 3212700 0 0 0 0 7353800 8470400 0 0 0 9002 1859 8776 167493;167494;167495;167496;167497;167498;167499;167500 103032;103033 103032 0 HTSDTPFDVSK Unmodified 1232.5673 0.56733108 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 2 2 2 2 1 1 1 1 1 15.949 16.742 2;3 1.4676E-14 5821 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 218.6 218.6 1542400000 3052500 4319300 5305300 0 0 0 254360000 228210000 270490000 0 0 0 160420000 154400000 142340000 0 0 0 110330000 106980000 102150000 0 0 0 9003 40 8777 167501;167502;167503;167504;167505;167506;167507;167508;167509;167510;167511;167512;167513;167514;167515;167516 103034;103035;103036;103037;103038;103039;103040;103041;103042;103043;103044 103038 9 HTSFSSAFVYPEVDDDIDIEINPADLR Unmodified 3064.4302 0.43017548 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.148 51.733 3 1.2351E-22 25321 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.05 165.41 826030000 93145000 79345000 76254000 0 947950 0 53909000 0 54605000 0 0 0 68202000 80378000 70701000 0 0 0 87713000 85554000 75271000 0 0 0 9004 149 8778 167517;167518;167519;167520;167521;167522;167523;167524;167525;167526;167527;167528 103045;103046;103047;103048;103049;103050;103051;103052;103053;103054 103047 10 HTTDGLLK Unmodified 883.47633 0.47633123 83 P03841 malM Maltose operon periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 1 12.357 13.004 2 0.00010738 3563 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.6 113.75 3319100000 209990000 182890000 174490000 11602000 9083000 11649000 321040000 276910000 3553900 21080000 19572000 21258000 3340700 266990000 307370000 8890800 6038500 7514100 460050000 482230000 475970000 13058000 12772000 11724000 9005 83 8779 167529;167530;167531;167532;167533;167534;167535;167536;167537;167538;167539;167540;167541;167542;167543;167544;167545;167546;167547;167548;167549;167550;167551;167552;167553;167554;167555;167556;167557;167558 103055;103056;103057;103058;103059;103060;103061;103062;103063;103064;103065;103066;103067;103068;103069;103070;103071;103072;103073 103061 19 HTTNNVTPPPEACTTWK Unmodified 1952.9051 0.90506034 1737 P69506 ytfE Iron-sulfur cluster repair protein YtfE yes yes 0 0 0 By matching By MS/MS 1 1 19.193 19.62 3 0.00087477 7602 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 45.876 45.345 18855000 4206700 0 0 0 0 0 0 0 14648000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9006 1737 8780 167559;167560 103074 103074 1 HTTVHTR Unmodified 850.44095 0.44094878 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 4.2814 5.1539 2 3.5279E-05 793 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 178.65 174.79 541230000 46660000 50611000 43435000 0 0 0 12817000 12280000 10624000 0 0 0 55526000 48163000 51523000 0 0 0 72492000 66797000 70304000 0 0 0 9007 63 8781 167561;167562;167563;167564;167565;167566;167567;167568;167569;167570;167571;167572;167573 103075;103076;103077;103078;103079;103080;103081;103082;103083;103084;103085;103086;103087;103088 103086 14 HTVEVMIPEAEIK Unmodified 1494.7752 0.77521537 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 30.293 28.937 2;3 1.4821E-09 14002 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 214.82 195.58 2387900000 172060000 188650000 163320000 0 0 0 197760000 189580000 189650000 0 0 0 206730000 216340000 184560000 0 0 0 215290000 247980000 216010000 0 0 0 9008 537 8782 167574;167575;167576;167577;167578;167579;167580;167581;167582;167583;167584;167585;167586;167587;167588;167589;167590;167591;167592;167593;167594;167595;167596;167597 103089;103090;103091;103092;103093;103094;103095;103096;103097;103098;103099;103100;103101;103102;103103;103104;103105;103106 103089 13 HTVSLLSHNDVNAR Unmodified 1561.7961 0.79610224 105 P05041 pabB Aminodeoxychorismate synthase component 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 13.839 14.691 3 0.0041591 4652 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 59.294 53.388 73256000 7573600 6517200 8074300 0 0 0 5436500 3778700 7139100 0 0 0 5358400 5038600 0 0 0 0 10137000 7376000 6827200 0 0 0 9009 105 8783 167598;167599;167600;167601;167602;167603;167604;167605;167606;167607;167608 103107 103107 1 HTWESIGR Unmodified 984.47773 0.47772821 672 P0ABQ4 folA Dihydrofolate reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.347 15.113 2 6.3142E-05 5066 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 168.45 97.736 265630000 18678000 17819000 16539000 0 0 0 24623000 19214000 15485000 0 0 0 24887000 21628000 17864000 0 0 0 29313000 28256000 31325000 0 0 0 9010 672 8784 167609;167610;167611;167612;167613;167614;167615;167616;167617;167618;167619;167620 103108;103109;103110 103109 3 HTWESIGRPLPGR Unmodified 1504.7899 0.78989465 672 P0ABQ4 folA Dihydrofolate reductase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.304 19.811 3 6.1948E-06 7684 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 96.103 88.901 416790000 40926000 20588000 22328000 0 0 0 24752000 32766000 32666000 0 0 0 29746000 33696000 29681000 0 0 0 45706000 52921000 51015000 0 0 0 9011 672 8785 167621;167622;167623;167624;167625;167626;167627;167628;167629;167630;167631;167632 103111;103112;103113;103114 103113 4 HTWSFVR Unmodified 931.46644 0.46643525 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.72 20.097 2 0.00082076 7979 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 143.97 127.82 208400000 17921000 16383000 13096000 0 0 0 23373000 13603000 18272000 2171300 0 0 0 11244000 14465000 0 0 0 23058000 29225000 25593000 0 0 0 9012 806 8786 167633;167634;167635;167636;167637;167638;167639;167640;167641;167642;167643;167644 103115;103116;103117;103118 103117 4 HVAILGDLQGPK Unmodified 1246.7034 0.70337105 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 26.923 25.75 2;3 7.5745E-09 11853 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 176.38 160.84 5381600000 319030000 317680000 253950000 6847200 6606200 3785000 547320000 564050000 567890000 14302000 14431000 11148000 500730000 480250000 501830000 3586300 3112700 2709400 461240000 375030000 402430000 7428200 7788100 8465900 9013 1184 8787 167645;167646;167647;167648;167649;167650;167651;167652;167653;167654;167655;167656;167657;167658;167659;167660;167661;167662;167663;167664;167665;167666;167667;167668;167669;167670;167671;167672;167673;167674;167675;167676;167677;167678;167679;167680;167681;167682;167683;167684;167685;167686;167687;167688;167689;167690;167691;167692;167693 103119;103120;103121;103122;103123;103124;103125;103126;103127;103128;103129;103130;103131;103132;103133;103134;103135;103136;103137;103138;103139;103140;103141;103142;103143;103144;103145;103146;103147;103148;103149;103150;103151;103152;103153;103154;103155;103156;103157;103158;103159 103128 41 HVAITVLR Unmodified 907.56034 0.56033563 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.614 18.298 2 2.3029E-06 6651 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 186.67 160.85 287240000 53327000 46613000 50258000 374150 0 0 24448000 23546000 31494000 0 0 0 6032300 8008400 10006000 0 0 0 11342000 14165000 7624900 0 0 0 9014 1278 8788 167694;167695;167696;167697;167698;167699;167700;167701;167702;167703;167704;167705;167706 103160;103161;103162;103163;103164;103165;103166;103167;103168;103169;103170;103171 103168 12 HVANMENANSTEFVPDCK Unmodified 2061.8884 0.888424 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 21.69 21.667 2;3 3.4636E-45 9069 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 314.52 306.61 3565300000 216200000 183810000 178010000 0 0 565760 241180000 266290000 272090000 1389800 1322300 0 339390000 311800000 320130000 0 0 0 417810000 405690000 409570000 0 0 0 9015 337 8789 167707;167708;167709;167710;167711;167712;167713;167714;167715;167716;167717;167718;167719;167720;167721;167722;167723;167724;167725;167726;167727;167728;167729;167730;167731;167732;167733 103172;103173;103174;103175;103176;103177;103178;103179;103180;103181;103182;103183;103184;103185;103186;103187;103188;103189;103190;103191;103192;103193;103194;103195 103174 24 HVAQAAEFWVFCADFNR Unmodified 2066.9421 0.94211455 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 49.04 47.755 3 0.10709 23016 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 34.274 34.274 18111000 0 3300200 0 0 0 0 0 0 2275500 0 0 0 0 0 2224000 0 0 0 3177400 3264800 3868900 0 0 0 9016 1136 8790 167734;167735;167736;167737;167738;167739 103196 103196 0 HVDHLDR Unmodified 890.43586 0.4358634 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 5.0771 6.004 2 0.0091803 1321 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 82.671 65.745 97560000 0 0 0 0 0 0 0 19363000 21170000 0 0 0 18201000 0 17965000 0 0 0 0 20862000 0 0 0 0 9017 1649 8791 167740;167741;167742;167743;167744;167745 103197;103198 103197 2 HVDPAAAIQQGK Unmodified 1233.6466 0.64658446 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 14.47 15.042 2;3 2.7598E-17 4505 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 220.39 179.51 1098500000 16689000 14512000 8211300 4109400 3509400 2265100 161170000 154150000 166080000 40580000 31940000 33466000 88300000 83929000 85939000 8732100 6697200 6912900 61218000 54393000 50310000 5200700 5006100 5215400 9018 700 8792 167746;167747;167748;167749;167750;167751;167752;167753;167754;167755;167756;167757;167758;167759;167760;167761;167762;167763;167764;167765;167766;167767;167768;167769;167770;167771;167772;167773;167774;167775;167776;167777;167778;167779;167780;167781;167782;167783;167784;167785;167786;167787;167788;167789;167790;167791 103199;103200;103201;103202;103203;103204;103205;103206;103207;103208;103209;103210;103211;103212;103213;103214;103215;103216;103217;103218;103219;103220;103221;103222;103223;103224;103225;103226;103227 103227 28 HVDQVMEHGEYATR Unmodified 1670.7471 0.74710314 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.56 13.271 3 0.00035187 3948 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 49.265 49.247 123310000 14035000 9912300 7553600 0 0 0 9860700 10360000 10926000 0 0 0 6163000 6509200 5532600 0 4130700 2645800 15517000 8879900 11286000 0 0 0 9019 1355 8793 167792;167793;167794;167795;167796;167797;167798;167799;167800;167801;167802;167803;167804;167805 103228;103229 103228 1 HVDSLITIPNDK Unmodified 1350.7143 0.71432967 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 2 1 1 2 1 26.955 25.577 2;3 4.7353E-18 11506 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.53 183.68 1669500000 0 136350000 120120000 23677000 24005000 23337000 117600000 118990000 116290000 91006000 96315000 85068000 92684000 88270000 83818000 0 0 0 139630000 117500000 128200000 18798000 25756000 22120000 9020 502 8794 167806;167807;167808;167809;167810;167811;167812;167813;167814;167815;167816;167817;167818;167819;167820;167821;167822;167823;167824;167825;167826;167827;167828;167829;167830;167831;167832;167833;167834 103230;103231;103232;103233;103234;103235;103236;103237;103238;103239;103240;103241;103242;103243;103244;103245;103246;103247;103248;103249;103250 103247 19 HVDTVCISSYDHDNQR Unmodified 1944.8384 0.83843734 538 P0A9M5 gpt Xanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.335 16.105 3 1.8537E-32 5429 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 209.39 209.06 2591200000 241550000 308760000 283410000 0 941730 872960 209290000 207340000 198450000 1743500 0 0 184730000 150220000 156680000 0 0 0 221320000 206950000 218910000 0 0 0 9021 538 8795 167835;167836;167837;167838;167839;167840;167841;167842;167843;167844;167845;167846;167847;167848;167849 103251;103252;103253;103254;103255;103256;103257;103258;103259;103260;103261;103262 103259 12 HVEGWDDPR Unmodified 1109.489 0.48902118 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.827 14.693 2 0.00011938 4627 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.6 124.36 1335700000 117190000 88798000 73375000 0 0 0 113610000 109470000 114080000 0 0 0 112330000 110470000 106720000 0 0 0 128600000 141490000 119580000 0 0 0 9022 63 8796 167850;167851;167852;167853;167854;167855;167856;167857;167858;167859;167860;167861 103263;103264;103265;103266;103267;103268;103269;103270;103271;103272;103273;103274 103268 12 HVEIQVLADGQGNAIYLAER Unmodified 2195.1335 0.13348037 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 2 2 2 2 2 2 2 2 2 1 40.193 38.484 2;3 2.5801E-23 17877 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 185.09 176.05 475730000 18163000 13329000 18090000 2382400 2219000 2057300 58552000 48613000 52392000 0 0 0 34084000 41256000 33587000 0 0 0 48303000 54560000 46997000 1145900 0 0 9023 1236 8797 167862;167863;167864;167865;167866;167867;167868;167869;167870;167871;167872;167873;167874;167875;167876;167877;167878;167879;167880;167881;167882;167883;167884;167885;167886;167887 103275;103276;103277;103278;103279;103280;103281;103282;103283;103284;103285;103286;103287;103288;103289 103289 15 HVELPAWQQLK Unmodified 1347.7299 0.72992016 1268 P25718 malS Alpha-amylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 31.367 29.939 2 3.6847E-14 14129 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 207.68 200.2 53958000 0 0 0 0 0 0 6053500 5848200 4691900 0 0 0 4409000 3857100 4759300 0 0 0 8087700 7940900 8310200 0 0 0 9024 1268 8798 167888;167889;167890;167891;167892;167893;167894;167895;167896 103290;103291;103292;103293;103294 103290 4 HVEQALNETPEK Unmodified 1393.6838 0.68375782 1645 P62517 mdoH Glucans biosynthesis glucosyltransferase H yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 12.079 12.817 2 7.5746E-05 3586 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 100.88 93.498 36801000 0 0 2905100 0 0 0 0 4650700 0 528200 952380 0 5723300 3769400 5967400 0 0 0 0 6668400 5635800 0 0 0 9025 1645 8799 167897;167898;167899;167900;167901;167902;167903;167904;167905 103295 103295 1 HVFASLFNDR Unmodified 1204.5989 0.59890598 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 30.148 28.679 2;3 1.1321E-05 13273 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.28 111.99 472110000 30809000 27563000 22952000 8263900 7100700 7230100 79502000 75008000 16950000 20007000 18147000 14749000 10989000 15010000 11201000 2510100 3166900 4270200 22866000 20999000 21110000 11170000 10028000 10508000 9026 1210 8800 167906;167907;167908;167909;167910;167911;167912;167913;167914;167915;167916;167917;167918;167919;167920;167921;167922;167923;167924;167925;167926;167927;167928;167929;167930;167931;167932;167933;167934;167935;167936;167937;167938;167939;167940;167941;167942;167943;167944;167945;167946;167947;167948;167949 103296;103297;103298;103299;103300;103301;103302;103303;103304;103305;103306;103307;103308;103309;103310;103311;103312;103313;103314;103315;103316;103317;103318;103319;103320;103321;103322;103323;103324;103325;103326;103327;103328 103321 33 HVFCEKPIALSYEDCVDMVK Unmodified 2439.1273 0.12727406 1529 P39353 yjhC Uncharacterized oxidoreductase YjhC yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 34.724 33.264 3 2.8073E-10 16166 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 120.92 117.65 95025000 15579000 12632000 11042000 0 0 741470 10108000 7418500 9192600 0 0 0 4428600 3221600 4124300 0 0 0 5267000 5399000 5870600 0 0 0 9027 1529 8801 167950;167951;167952;167953;167954;167955;167956;167957;167958;167959;167960;167961;167962 103329;103330;103331;103332 103330 4 HVFGNPLIQQPLMR Unmodified 1648.8872 0.88716585 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.643 34.98 2 1.8898E-14 17300 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 189.18 180.94 41223000 6953400 4024900 5327900 0 0 0 8031100 9358900 7526900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9028 1413 8802 167963;167964;167965;167966;167967;167968 103333;103334;103335 103333 3 HVFNGMGYDGDNISPHLAWDDVPAGTK Unmodified 2912.3188 0.31879132 1080 P12994 ybhB UPF0098 protein YbhB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 40.22 38.781 3;4 7.6379E-24 18846 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 158.67 158.09 155200000 56975000 54677000 43546000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9029 1080 8803 167969;167970;167971;167972;167973;167974 103336;103337;103338;103339;103340 103338 5 HVGGDELDK Unmodified 968.45632 0.45632407 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.955 11.507 2 6.9137E-05 2749 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 144.09 126.32 2441900000 23657000 24403000 27177000 0 0 0 259040000 258190000 253750000 17533000 14527000 11668000 190070000 191790000 166330000 2895500 0 2265700 334720000 337140000 303120000 10870000 6450900 6254600 9030 531 8804 167975;167976;167977;167978;167979;167980;167981;167982;167983;167984;167985;167986;167987;167988;167989;167990;167991;167992;167993;167994 103341;103342;103343;103344;103345;103346;103347;103348;103349;103350;103351;103352;103353;103354 103345 14 HVGGDELDKLLAGK Unmodified 1450.778 0.77799256 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 2 2 2 1 1 1 1 1 1 1 1 2 1 29.506 28.05 2;3 3.8905E-08 10594 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 109 105.14 188400000 0 0 0 2223100 2570900 2200700 0 0 0 31237000 28884000 32493000 8447500 7687000 8749700 6512700 4346200 6018200 0 21926000 0 3074200 19412000 2618800 9031 531 8805 167995;167996;167997;167998;167999;168000;168001;168002;168003;168004;168005;168006;168007;168008;168009;168010;168011;168012;168013;168014 103355;103356;103357;103358;103359;103360;103361;103362;103363 103358 9 HVGGDELDKLLAGKDSDK Unmodified 1895.9589 0.95887005 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 2 25.087 23.959 3;4 1.2647E-06 8936 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.01 84.914 111450000 0 0 0 0 3082100 3353800 0 0 0 18830000 16690000 18790000 0 0 0 6045700 0 4834600 0 0 0 10972000 14974000 13875000 9032 531 8806 168015;168016;168017;168018;168019;168020;168021;168022;168023;168024;168025;168026;168027;168028;168029;168030;168031;168032;168033 103364;103365;103366;103367;103368;103369 103365 6 HVGGVAEYR Unmodified 986.49338 0.49337828 1623 P60560 guaC GMP reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.49 12.322 2 2.7985E-06 3241 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 176.66 158.81 1950100000 160040000 121380000 124220000 0 0 0 160310000 141630000 158980000 0 0 0 167810000 170660000 136540000 0 0 0 206320000 204920000 197290000 0 0 0 9033 1623 8807 168034;168035;168036;168037;168038;168039;168040;168041;168042;168043;168044;168045 103370;103371;103372;103373;103374;103375;103376 103373 7 HVGPDVCLHLVGA Unmodified 1372.6922 0.69215444 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 2 1 1 1 2 1 1 32.932 31.355 2;3 0.00010127 15062 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.551 78.011 183840000 0 0 0 0 0 0 52852000 17435000 20765000 0 0 0 13116000 13796000 0 0 0 0 17761000 17293000 17112000 0 7765700 5941000 9034 1262 8808 168046;168047;168048;168049;168050;168051;168052;168053;168054;168055;168056;168057;168058;168059;168060;168061 103377;103378;103379;103380;103381;103382;103383;103384;103385;103386 103381 9 HVGVAPADAANALGSFINAR Unmodified 1950.0072 0.0071576485 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 1 2 2 2 43.896 42.375 2;3 3.6703E-25 20477 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 247.64 245.5 585390000 50072000 39825000 47959000 0 0 0 79912000 10668000 74525000 0 0 0 9152600 12712000 13773000 0 0 0 74626000 84666000 87501000 0 0 0 9035 1500 8809 168062;168063;168064;168065;168066;168067;168068;168069;168070;168071;168072;168073;168074;168075;168076;168077;168078;168079;168080;168081;168082;168083 103387;103388;103389;103390;103391;103392;103393;103394;103395;103396;103397;103398;103399;103400;103401;103402;103403;103404 103394 18 HVGVLQGSTQEAYANETWR Unmodified 2145.0239 0.023929925 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 27.325 26.399 2;3 5.8337E-81 11861 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 404.24 392.8 1100000000 371790000 387090000 337890000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3206400 0 0 0 9036 217 8810 168084;168085;168086;168087;168088;168089;168090 103405;103406;103407;103408;103409;103410 103410 4 HVITVFTDITCGYCHK Unmodified 1949.9128 0.91278826 858 P0AEG6 dsbC Thiol:disulfide interchange protein DsbC yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.774 31.245 3 1.1622E-08 14720 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.34 122.34 540830000 39703000 42631000 42515000 995900 0 0 60497000 53741000 57930000 2349600 1787400 0 32837000 26361000 22157000 0 0 0 52242000 49784000 55300000 0 0 0 9037 858 8811 168091;168092;168093;168094;168095;168096;168097;168098;168099;168100;168101;168102;168103;168104;168105 103411;103412 103412 2 HVLGYLQDFLFHPK Unmodified 1712.9039 0.90386178 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.326 45.824 3 1.4418E-06 22355 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.19 87.642 142810000 10553000 11132000 8733200 0 0 0 13773000 14053000 12838000 1389400 996280 0 10199000 8547100 9385700 0 0 0 13243000 12564000 15403000 0 0 0 9038 1564 8812 168106;168107;168108;168109;168110;168111;168112;168113;168114;168115;168116;168117;168118;168119 103413;103414;103415;103416 103415 4 HVLHGISLLGQCPDSINAALICR Unmodified 2543.3101 0.31008131 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 2 2 2 41.279 39.726 3;4 4.0324E-22 19414 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 171.35 171.35 891670000 190560000 165950000 169030000 0 0 0 10752000 0 0 0 0 0 39874000 36949000 18491000 0 0 0 87103000 90769000 82200000 0 0 0 9039 34 8813 168120;168121;168122;168123;168124;168125;168126;168127;168128;168129;168130;168131;168132;168133;168134;168135;168136;168137 103417;103418;103419;103420;103421;103422;103423;103424;103425;103426;103427;103428;103429 103424 9 HVLIATDGVFSMDGVIANLK Unmodified 2099.1085 0.10851118 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 51.961 50.711 2;3 7.8633E-70 24946 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 316.61 306.26 918140000 73978000 67233000 72687000 1963300 0 0 96611000 91895000 86009000 0 0 0 61493000 67708000 54136000 0 0 0 79166000 85778000 79478000 0 0 0 9040 635 8814 168138;168139;168140;168141;168142;168143;168144;168145;168146;168147;168148;168149;168150;168151;168152;168153;168154;168155;168156;168157;168158;168159;168160;168161;168162 103430;103431;103432;103433;103434;103435;103436;103437;103438;103439;103440;103441;103442;103443;103444;103445;103446;103447;103448;103449;103450 103440 21 HVLIIGGGDGAMLR Unmodified 1407.7657 0.76565374 207 P09158 speE Polyamine aminopropyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 31.345 30.055 2;3 1.4838E-06 13977 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.57 117.25 962700000 217690000 220730000 181160000 0 0 0 20845000 20900000 19597000 0 0 0 37676000 44083000 36969000 0 0 0 62510000 52632000 47906000 0 0 0 9041 207 8815 168163;168164;168165;168166;168167;168168;168169;168170;168171;168172;168173;168174;168175;168176;168177;168178;168179;168180;168181;168182;168183 103451;103452;103453;103454;103455;103456;103457;103458;103459;103460;103461;103462;103463;103464;103465 103461 12 HVLIYGAGVIGCEYASIFR Unmodified 2124.0826 0.082630778 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.927 49.594 3 7.4003E-07 17920 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 97.904 93.146 146210000 20347000 17051000 15104000 0 1890900 2285700 0 7454800 0 3511100 2742600 2404400 7062000 8985900 7181000 0 0 0 14842000 15324000 15482000 1888700 889090 1759300 9042 1302 8816 168184;168185;168186;168187;168188;168189;168190;168191;168192;168193;168194;168195;168196;168197;168198;168199;168200;168201 103466;103467;103468;103469;103470;103471 103468 6 HVLLADETVCIGPAPSVK Unmodified 1905.003 0.002983473 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 34.769 33.207 2;3 5.0619E-30 15141 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 224.42 215.91 2119000000 107550000 90037000 88986000 1987800 2121800 2725700 180880000 172060000 175120000 3351900 2522700 2746100 164410000 172080000 154020000 0 1228300 0 271310000 269010000 246230000 3854600 4183700 2635900 9043 1236 8817 168202;168203;168204;168205;168206;168207;168208;168209;168210;168211;168212;168213;168214;168215;168216;168217;168218;168219;168220;168221;168222;168223;168224;168225;168226;168227;168228;168229;168230;168231;168232;168233;168234;168235 103472;103473;103474;103475;103476;103477;103478;103479;103480;103481;103482;103483;103484;103485;103486;103487;103488;103489;103490;103491;103492;103493;103494;103495;103496;103497;103498 103498 25 HVLLLSR Unmodified 836.52322 0.52322184 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.363 18.058 2 7.0406E-05 6546 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 175.93 168.52 1120600000 118330000 137090000 100380000 0 1091600 0 116350000 143680000 106500000 0 0 0 53270000 64716000 55693000 0 0 0 66172000 83867000 73449000 0 0 0 9044 43 8818 168236;168237;168238;168239;168240;168241;168242;168243;168244;168245;168246;168247;168248 103499;103500;103501;103502;103503;103504;103505;103506;103507;103508 103507 9 HVLMLCDAGGAIK Unmodified 1383.7003 0.70027629 1472 P37590 pmrD Signal transduction protein PmrD yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 26.904 25.708 2 1.6517E-05 11660 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.78 127.22 54966000 0 3900300 0 0 0 0 9383800 4538900 5468300 0 0 0 3737700 4408800 5554900 0 0 0 8068500 4748100 5156800 0 0 0 9045 1472 8819 168249;168250;168251;168252;168253;168254;168255;168256;168257;168258 103509;103510;103511;103512 103511 2 HVLPSHAQDIYK Unmodified 1406.7306 0.73064844 836 P0AE63 chaB Cation transport regulator ChaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 1 13.99 14.808 2;3 8.3989E-06 4781 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.33 116.61 576850000 118360000 103920000 74939000 0 0 0 74568000 57219000 73363000 0 0 0 9839500 9680200 7666000 0 0 0 14296000 19662000 13339000 0 0 0 9046 836 8820 168259;168260;168261;168262;168263;168264;168265;168266;168267;168268;168269;168270;168271;168272;168273;168274;168275;168276;168277;168278 103513;103514;103515;103516;103517;103518;103519;103520;103521;103522;103523;103524;103525;103526 103513 14 HVMSIADHVVQESR Unmodified 1606.7886 0.78857402 612 P0AAT6 rsfS Ribosomal silencing factor RsfS yes yes 0 0 0 By MS/MS 1 18.871 19.422 3 0.0021953 7384 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.709 60.909 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9047 612 8821 168279 103527 103527 1 HVMVSTGTSDADFEK Unmodified 1622.7246 0.72463636 1623 P60560 guaC GMP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 17.941 18.519 2;3 4.2264E-57 6842 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 313.05 313.05 1721000000 145390000 146570000 139850000 0 684560 495020 118750000 145560000 124210000 0 0 0 134040000 119560000 113550000 0 690340 0 173040000 177990000 180650000 0 0 0 9048 1623 8822 168280;168281;168282;168283;168284;168285;168286;168287;168288;168289;168290;168291;168292;168293;168294;168295;168296;168297;168298;168299;168300;168301;168302;168303;168304;168305;168306 103528;103529;103530;103531;103532;103533;103534;103535;103536;103537;103538;103539;103540;103541;103542;103543;103544;103545;103546;103547;103548 103537 21 HVNYISMEFLIGR Unmodified 1577.8024 0.80243317 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 44.917 43.358 2;3 3.5576E-11 20378 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 180.2 176.88 683870000 11402000 8143500 10224000 0 0 0 76667000 80565000 73003000 40866000 34886000 19186000 35221000 34717000 33955000 9064400 13910000 10067000 62717000 59318000 53410000 6340100 5094800 5116000 9049 30 8823 168307;168308;168309;168310;168311;168312;168313;168314;168315;168316;168317;168318;168319;168320;168321;168322;168323;168324;168325;168326;168327;168328;168329;168330;168331;168332;168333;168334;168335;168336;168337;168338;168339 103549;103550;103551;103552;103553;103554;103555;103556;103557;103558;103559;103560;103561;103562;103563;103564;103565;103566;103567;103568;103569;103570;103571;103572;103573;103574;103575;103576 103572 21 HVPGTPYWVITNTNTGRK Unmodified 2040.0541 0.054107841 972 P0AFY8 seqA Negative modulator of initiation of replication yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 23.952 23.907 3 0.031865 7331 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 39.657 36.419 6190200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2554000 1790100 1846100 0 0 0 0 0 0 9050 972 8824 168340;168341;168342 103577 103577 1 HVPLDALER Unmodified 1048.5665 0.56654322 1202 P22939 ispA Farnesyl diphosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.388 21.662 2 0.00073823 8771 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 102.51 87.978 536830000 41734000 46798000 42188000 0 0 0 43196000 43095000 42598000 0 0 0 30709000 24564000 25777000 0 0 0 68445000 64787000 62936000 0 0 0 9051 1202 8825 168343;168344;168345;168346;168347;168348;168349;168350;168351;168352;168353;168354 103578;103579;103580;103581;103582;103583;103584;103585;103586 103581 9 HVQALDLSMR Unmodified 1168.6023 0.6022768 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 1 2 22.897 22.307 2;3 3.3368E-05 9366 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.09 155.38 251710000 31814000 28437000 26783000 0 0 0 23282000 21555000 21965000 0 0 0 18507000 9208800 11810000 0 0 0 23091000 16287000 18970000 0 0 0 9052 1334 8826 168355;168356;168357;168358;168359;168360;168361;168362;168363;168364;168365;168366;168367;168368;168369;168370;168371;168372;168373;168374;168375;168376 103587;103588;103589;103590;103591;103592;103593;103594;103595;103596;103597;103598;103599 103596 13 HVQLSGEGWDADR Unmodified 1468.6695 0.66950474 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 3 2 2 2 20.134 20.551 2;3 3.6941E-18 8298 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.08 218.78 1994200000 151390000 154530000 119730000 0 0 0 170780000 157530000 185080000 0 0 0 201540000 158060000 171370000 0 0 0 190270000 163340000 170550000 0 0 0 9053 1456 8827 168377;168378;168379;168380;168381;168382;168383;168384;168385;168386;168387;168388;168389;168390;168391;168392;168393;168394;168395;168396;168397;168398;168399;168400;168401;168402 103600;103601;103602;103603;103604;103605;103606;103607;103608;103609;103610;103611;103612;103613;103614;103615 103600 16 HVQVAEMVIEK Unmodified 1281.6751 0.67510739 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 1 2 1 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 23.064 22.386 2;3 1.7535E-10 8061 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 193.96 169.19 969610000 150690000 126260000 121220000 9749500 8688600 8938700 64275000 57454000 55046000 35644000 28149000 42782000 38726000 31232000 34437000 0 0 0 43968000 50709000 50234000 4257300 2885000 4273200 9054 982 8828 168403;168404;168405;168406;168407;168408;168409;168410;168411;168412;168413;168414;168415;168416;168417;168418;168419;168420;168421;168422;168423;168424;168425;168426;168427;168428;168429;168430;168431;168432;168433;168434;168435;168436;168437;168438 103616;103617;103618;103619;103620;103621;103622;103623;103624;103625;103626;103627;103628;103629;103630;103631;103632;103633;103634;103635;103636;103637;103638;103639;103640 103616 25 HVSDAFEQTSETIGVR Unmodified 1774.8486 0.84859132 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.968 25.821 2 2.443E-10 11689 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 150.21 143.98 75900000 7146400 7686700 4837000 0 0 0 6329100 4507900 7546700 0 0 0 5540400 4830600 4579300 0 0 0 7131700 8647200 7116700 0 0 0 9055 1617 8829 168439;168440;168441;168442;168443;168444;168445;168446;168447;168448;168449;168450 103641;103642 103642 2 HVSPAFGEDPLR Unmodified 1323.6571 0.65714914 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.611 22.89 2 1.6426E-06 9873 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 147.12 107.97 72792000 11587000 8620200 6237900 0 0 0 5906800 5086500 5917300 0 0 0 3393600 3841500 3175800 0 0 0 5332700 7516000 6175900 0 0 0 9056 134 8830 168451;168452;168453;168454;168455;168456;168457;168458;168459;168460;168461;168462 103643;103644;103645;103646 103643 4 HVSQLHWGGGTPTYLNK Unmodified 1893.9486 0.94858014 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 43.393 41.779 3 0.16912 20656 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 5.2096 1.0383 244750000 32082000 29835000 25134000 0 0 0 27344000 26343000 24992000 1149900 0 0 13049000 13190000 13470000 0 0 0 12274000 11491000 14398000 0 0 0 9057 1387 8831 168463;168464;168465;168466;168467;168468;168469;168470;168471;168472;168473;168474;168475 103647 103647 1 HVSSCGCNIEDSR Unmodified 1519.6144 0.6143744 524 P0A9I3 gcvR Glycine cleavage system transcriptional repressor yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.092 11.919 2 2.6299E-31 3004 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 257.54 257.54 163670000 24376000 26369000 23022000 0 0 0 13675000 15568000 13343000 0 0 0 8216000 9761500 7284500 0 0 0 0 9338200 12712000 0 0 0 9058 524 8832 168476;168477;168478;168479;168480;168481;168482;168483;168484;168485;168486 103648;103649 103649 2 HVTCAYR Unmodified 905.41777 0.41777049 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 9.8845 10.7 2 0.00097355 2505 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 139.92 133.53 682390000 155480000 118730000 127930000 0 0 0 3804100 7238000 7609400 0 0 0 50316000 32996000 32365000 0 0 0 48056000 42826000 55034000 0 0 0 9059 219 8833 168487;168488;168489;168490;168491;168492;168493;168494;168495;168496;168497;168498 103650;103651;103652;103653;103654;103655;103656;103657;103658;103659;103660;103661;103662;103663;103664 103659 15 HVVEQAQK Unmodified 937.49813 0.49812931 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 5.3198 6.169 2 0.00025971 1513 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.4 107.75 122740000 18976000 17885000 17397000 0 0 0 13604000 8360900 13313000 0 0 0 6733200 2780100 5001600 0 0 0 6810900 5566900 6306400 0 0 0 9060 162 8834 168499;168500;168501;168502;168503;168504;168505;168506;168507;168508;168509;168510;168511 103665;103666;103667;103668;103669;103670;103671;103672;103673 103668 9 HVVITGGEPCIHDLLPLTDLLEK Unmodified 2568.3622 0.36215968 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 51.674 50.462 3 4.2301E-22 23735 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 170.91 150.47 334550000 35771000 31339000 40934000 0 601280 0 0 0 39686000 0 0 0 33659000 0 29006000 0 0 0 42275000 42716000 38559000 0 0 0 9061 1685 8835 168512;168513;168514;168515;168516;168517;168518;168519;168520;168521 103674;103675;103676;103677;103678;103679;103680;103681 103680 8 HVVTFNMDEYVGLPK Unmodified 1747.8603 0.86034198 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 40.204 38.629 3 6.2166E-05 18767 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.468 83.809 263000000 0 42403000 37619000 0 0 0 0 0 43579000 0 0 0 16477000 20566000 15353000 0 0 0 27667000 30399000 28943000 0 0 0 9062 313 8836 168522;168523;168524;168525;168526;168527;168528;168529;168530 103682;103683;103684;103685;103686;103687;103688;103689 103685 1 HVVVDKPFTVTLSQAR Unmodified 1795.9945 0.9944677 1902 P77376 ydgJ Uncharacterized oxidoreductase YdgJ yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.681 24.609 3 2.8467E-10 10959 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.65 138.63 230130000 29119000 34433000 25474000 0 0 0 16206000 18674000 17078000 0 0 0 12348000 14352000 8610000 0 0 0 20468000 17346000 16021000 0 0 0 9063 1902 8837 168531;168532;168533;168534;168535;168536;168537;168538;168539;168540;168541;168542 103690;103691;103692;103693;103694;103695;103696 103694 7 HVYVENTPLPAISDMSIGHAMEFFNNLK Unmodified 3173.5314 0.53142663 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 53.918 53.759 3;4 6.513E-11 19977 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 117.08 111.71 201250000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52182000 61831000 84478000 0 0 0 2756900 0 0 9064 222 8838 168543;168544;168545;168546;168547;168548;168549 103697;103698;103699;103700 103698 3 HWAANQGWDLNK Unmodified 1438.6742 0.67419619 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 1 1 1 23.832 23.042 2;3 1.2432E-30 9870 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 254.24 227.8 1998500000 648070000 583250000 572930000 845800 0 0 0 0 0 2112700 0 0 27422000 29293000 25498000 0 0 0 36592000 38248000 33652000 0 560890 0 9065 852 8839 168550;168551;168552;168553;168554;168555;168556;168557;168558;168559;168560;168561;168562;168563;168564 103701;103702;103703;103704;103705;103706;103707;103708;103709;103710;103711;103712 103707 12 HWDNIEVR Unmodified 1067.5148 0.514842 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.98 18.508 2 0.01404 5825 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.485 68.168 85597000 5341300 6335200 0 0 0 0 6515600 6487600 5533200 2927500 0 0 6328600 4130500 6369400 0 0 0 12723000 11513000 11393000 0 0 0 9066 1932 8840 168565;168566;168567;168568;168569;168570;168571;168572;168573;168574;168575;168576 103713 103713 1 HWLCADPR Unmodified 1053.4814 0.48143338 1066 P11071 aceK Isocitrate dehydrogenase kinase/phosphatase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 16.552 17.251 2 0.0033032 6082 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.262 88.906 26336000 10118000 9545900 6671900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9067 1066 8841 168577;168578;168579 103714;103715 103715 2 HWLIVGMNDSTVLGGVR Unmodified 1852.9618 0.96178736 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 45.671 44.259 2;3 1.3769E-10 21551 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.88 123.62 120140000 42736000 40311000 34329000 0 0 0 0 2764400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9068 71 8842 168580;168581;168582;168583;168584;168585;168586 103716;103717;103718;103719;103720;103721 103718 6 HWQQGMHNVAWNALFWCNHDQPR Unmodified 2931.2983 0.29828784 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 3 2 3 3 3 3 1 37.827 36.056 3;4;5 4.2301E-22 17442 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 170.91 169.63 643000000 0 0 0 0 0 0 76970000 93027000 83526000 0 0 0 61329000 47163000 49270000 0 0 0 66862000 75139000 88718000 0 995140 0 9069 1324 8843 168587;168588;168589;168590;168591;168592;168593;168594;168595;168596;168597;168598;168599;168600;168601;168602;168603;168604;168605;168606;168607;168608;168609;168610;168611;168612;168613 103722;103723;103724;103725;103726;103727;103728;103729;103730;103731;103732;103733 103727 12 HWVQWQDPFPK Unmodified 1466.7095 0.70951906 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 1 1 1 1 2 2 2 2 2 2 37.113 35.501 2;3 0.00038259 17177 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.55 99.988 298750000 37910000 37892000 15650000 0 0 0 17978000 19154000 17113000 0 0 0 19935000 18924000 19148000 0 0 0 27457000 32459000 35127000 0 0 0 9070 94 8844 168614;168615;168616;168617;168618;168619;168620;168621;168622;168623;168624;168625;168626;168627;168628;168629;168630;168631;168632;168633 103734;103735;103736;103737;103738;103739 103738 6 HYAHVDCPGHADYVK Unmodified 1767.7787 0.77873762 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 7 3 3 3 6 6 6 3 3 3 6 4 6 3 2 2 8 6 6 3 3 3 12.634 13.319 2;3;4 1.181E-35 3365 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 260.22 257.81 171270000000 11733000000 11587000000 10235000000 308720000 337270000 304450000 15206000000 16351000000 16000000000 141920000 129290000 113700000 14936000000 13951000000 11854000000 49723000 58872000 40358000 16431000000 15553000000 15616000000 117510000 113110000 98976000 9071 1048 8845 168634;168635;168636;168637;168638;168639;168640;168641;168642;168643;168644;168645;168646;168647;168648;168649;168650;168651;168652;168653;168654;168655;168656;168657;168658;168659;168660;168661;168662;168663;168664;168665;168666;168667;168668;168669;168670;168671;168672;168673;168674;168675;168676;168677;168678;168679;168680;168681;168682;168683;168684;168685;168686;168687;168688;168689;168690;168691;168692;168693;168694;168695;168696;168697;168698;168699;168700;168701;168702;168703;168704;168705;168706;168707;168708;168709;168710;168711;168712;168713;168714;168715;168716;168717;168718;168719;168720;168721;168722;168723;168724;168725;168726;168727;168728;168729;168730;168731;168732;168733;168734;168735;168736;168737 103740;103741;103742;103743;103744;103745;103746;103747;103748;103749;103750;103751;103752;103753;103754;103755;103756;103757;103758;103759;103760;103761;103762;103763;103764;103765;103766;103767;103768;103769;103770;103771;103772;103773;103774;103775;103776;103777;103778;103779;103780;103781;103782;103783;103784;103785;103786;103787;103788;103789;103790;103791;103792;103793;103794;103795;103796;103797;103798;103799;103800;103801;103802;103803;103804;103805;103806;103807;103808;103809;103810;103811;103812;103813;103814;103815;103816;103817;103818;103819;103820;103821;103822;103823;103824;103825;103826;103827;103828 103768 89 HYASAISVLTDEK Unmodified 1432.7198 0.71980898 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 26.693 25.739 2 1.3555E-13 11583 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 202.31 187.15 78115000 27189000 25984000 22600000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2341800 0 0 0 0 9072 49 8846 168738;168739;168740;168741 103829;103830 103829 2 HYDEDEEFAER Unmodified 1438.5637 0.56370227 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.086 15.894 2 1.208E-19 5486 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 231.38 231.38 177830000 10396000 11195000 10879000 0 0 0 12730000 13319000 15907000 0 0 0 13920000 12581000 16516000 0 0 0 22985000 17501000 19901000 0 0 0 9073 1073 8847 168742;168743;168744;168745;168746;168747;168748;168749;168750;168751;168752;168753 103831;103832;103833;103834;103835;103836;103837;103838;103839;103840;103841;103842 103831 12 HYDETLAVVR Unmodified 1201.6091 0.60913632 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.8 20.123 2 0.0019065 7807 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 100.98 87.947 119230000 6684600 5742100 10127000 0 0 0 11614000 7114200 13693000 3128900 4311600 1837700 9584800 7285200 6913200 0 0 0 9090200 9080200 13028000 0 0 0 9074 1932 8848 168754;168755;168756;168757;168758;168759;168760;168761;168762;168763;168764;168765;168766;168767;168768 103843;103844;103845;103846;103847 103844 2 HYDHAVSPMDVALDIGPGLAK Unmodified 2205.0888 0.088838367 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 1 3 3 3 1 2 1 3 3 3 1 1 3 3 3 1 1 42.215 40.5 2;3;4 1.6041E-52 20099 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 284.38 281.51 3265800000 250390000 265240000 251590000 2197700 2225800 1797400 282300000 283820000 293400000 2020800 5481600 2457400 251060000 245710000 200080000 2816200 1287600 0 308980000 295450000 312930000 1960800 0 2624400 9075 445 8849 168769;168770;168771;168772;168773;168774;168775;168776;168777;168778;168779;168780;168781;168782;168783;168784;168785;168786;168787;168788;168789;168790;168791;168792;168793;168794;168795;168796;168797;168798;168799;168800;168801;168802;168803;168804;168805;168806;168807;168808;168809;168810;168811;168812;168813;168814;168815 103848;103849;103850;103851;103852;103853;103854;103855;103856;103857;103858;103859;103860;103861;103862;103863;103864;103865;103866;103867;103868;103869;103870;103871;103872;103873;103874;103875;103876;103877;103878;103879 103856 32 HYDWNGAMQPMVSK Unmodified 1662.7283 0.72828195 626 P0AB38 lpoB Penicillin-binding protein activator LpoB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 29.252 27.235 3 0.0073095 10554 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 53.3 53.213 15225000 0 0 0 0 0 0 0 5191500 0 2662600 3398100 2809200 0 0 0 0 0 0 0 0 0 0 1163100 0 9076 626 8850 168816;168817;168818;168819;168820 103880;103881;103882 103880 3 HYDYIAIGGGSGGIASINR Unmodified 1919.949 0.94897407 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.25 32.802 2;3 2.1013E-22 15606 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 240.11 231.38 753160000 63029000 57360000 52429000 0 0 0 72352000 79690000 61811000 0 0 0 52299000 59647000 52274000 0 0 0 66560000 72842000 62868000 0 0 0 9077 128 8851 168821;168822;168823;168824;168825;168826;168827;168828;168829;168830;168831;168832;168833;168834;168835;168836;168837;168838;168839;168840;168841;168842;168843;168844 103883;103884;103885;103886;103887;103888;103889;103890;103891;103892;103893;103894;103895;103896;103897;103898;103899;103900;103901;103902;103903;103904 103889 20 HYEIVFMVHPDQSEQVPGMIER Unmodified 2640.2465 0.246478 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 2 2 2 2 2 2 3 3 2 2 2 3 3 2 2 2 2 41.366 39.754 2;3;4 2.7405E-53 19398 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 263.24 259.71 5717300000 1011700000 829650000 751160000 10702000 10638000 8614400 208560000 206480000 170420000 43370000 47514000 32175000 263320000 257020000 319760000 30434000 22571000 20565000 451260000 511350000 434490000 24650000 26190000 24685000 9078 66 8852 168845;168846;168847;168848;168849;168850;168851;168852;168853;168854;168855;168856;168857;168858;168859;168860;168861;168862;168863;168864;168865;168866;168867;168868;168869;168870;168871;168872;168873;168874;168875;168876;168877;168878;168879;168880;168881;168882;168883;168884;168885;168886;168887;168888;168889;168890;168891;168892;168893;168894;168895;168896;168897;168898;168899;168900 103905;103906;103907;103908;103909;103910;103911;103912;103913;103914;103915;103916;103917;103918;103919;103920;103921;103922;103923;103924;103925;103926;103927;103928;103929;103930;103931;103932;103933;103934;103935;103936;103937;103938;103939;103940;103941;103942;103943;103944;103945;103946;103947;103948;103949;103950;103951;103952;103953;103954;103955;103956;103957;103958 103932 54 HYEIVFMVHPDQSEQVPGMIER Oxidation (M) 2656.2414 0.24139262 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 1 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 37.984 36.244 3 0.0034285 17774 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 53.342 51.55 46090000 12836000 8814300 5961100 0 0 0 4328600 0 0 0 1261700 0 0 0 4034400 0 0 0 3591900 5261700 0 0 0 0 9079 66 8852 168901;168902;168903;168904;168905;168906;168907;168908 103959;103960 103960 30 1 HYFDEALSGGKPGDDDVIEMM Unmodified 2324.9929 0.99294865 1873 P76561 ypfH Esterase YpfH yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.947 45.408 3 0.0053678 18393 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 44.587 44.587 162580000 19432000 17294000 19222000 0 0 0 15107000 15312000 13410000 4294900 4041300 3806400 8968900 6322900 10653000 0 0 0 8758300 7409000 8550600 0 0 0 9080 1873 8853 168909;168910;168911;168912;168913;168914;168915;168916;168917;168918;168919;168920;168921;168922;168923 103961 103961 1 HYFGINWDR Unmodified 1206.557 0.55704117 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 30.499 29.142 2;3 1.0912E-05 13500 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 165.52 165.52 1500300000 101260000 96327000 88295000 0 0 0 142250000 139750000 133670000 0 0 0 130850000 110370000 118410000 0 0 0 149840000 153100000 136180000 0 0 0 9081 1120 8854 168924;168925;168926;168927;168928;168929;168930;168931;168932;168933;168934;168935;168936;168937;168938;168939;168940;168941;168942;168943;168944;168945;168946;168947 103962;103963;103964;103965;103966;103967;103968;103969;103970;103971;103972;103973;103974;103975;103976;103977;103978;103979;103980;103981;103982;103983;103984;103985 103976 24 HYFPVNAR Unmodified 1002.5035 0.50354903 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 14.624 15.411 2 0.002896 5114 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.666 90.362 43345000 12714000 15778000 14370000 0 482630 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9082 891 8855 168948;168949;168950;168951 103986 103986 1 HYGALQGLNK Unmodified 1099.5774 0.57744226 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 14.271 15.007 2;3 6.2368E-17 4783 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 231.97 213.19 12907000000 1466900000 1418900000 1148400000 2707200 2834900 3843600 1003100000 1144100000 982400000 1174600 1370400 1314400 759820000 757120000 784180000 0 0 0 1072300000 1156700000 1195400000 1375700 1224800 1357800 9083 1652 8856 168952;168953;168954;168955;168956;168957;168958;168959;168960;168961;168962;168963;168964;168965;168966;168967;168968;168969;168970;168971;168972;168973;168974;168975;168976;168977;168978;168979;168980;168981;168982;168983;168984 103987;103988;103989;103990;103991;103992;103993;103994;103995;103996;103997;103998;103999;104000;104001;104002;104003;104004 103991 16 HYGRPMDIEWAK Unmodified 1501.7136 0.71361816 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.129 21.822 3 0.0043187 7691 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 62.528 60.516 400310000 73537000 38497000 0 7440600 7673000 0 21223000 21149000 1657800 16997000 13161000 12591000 0 0 21148000 4686000 4120600 4064200 39727000 43052000 39673000 11722000 10097000 8094000 9084 1210 8857 168985;168986;168987;168988;168989;168990;168991;168992;168993;168994;168995;168996;168997;168998;168999;169000;169001;169002;169003;169004 104005;104006;104007;104008;104009;104010;104011;104012;104013;104014;104015;104016;104017;104018;104019;104020 104008 15 HYHPQDATTNPSLLLK Unmodified 1833.9373 0.93734675 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 3 3 3 22.535 21.948 2;3;4 7.5806E-24 9227 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 239.19 222.56 3186400000 623830000 489080000 442750000 0 0 0 374580000 351310000 396080000 0 0 0 53494000 61813000 58269000 0 0 0 114310000 108220000 112720000 0 0 0 9085 401 8858 169005;169006;169007;169008;169009;169010;169011;169012;169013;169014;169015;169016;169017;169018;169019;169020;169021;169022;169023;169024;169025;169026;169027;169028;169029;169030;169031;169032;169033;169034 104021;104022;104023;104024;104025;104026;104027;104028;104029;104030;104031;104032;104033;104034;104035;104036;104037;104038;104039;104040;104041;104042;104043 104035 23 HYLAPSDK Unmodified 929.46068 0.46068117 1972 Q47146 fadE Acyl-coenzyme A dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS 1 1 11.103 11.825 2 0.0016119 2943 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.81 90.253 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9086 1972 8859 169035;169036 104044;104045 104044 2 HYMFHTKPEDLTDSER Unmodified 2004.9 0.89997496 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 2 2 2 2 4 2 2 17.126 17.855 2;3;4 1.363E-18 6479 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 232.25 232.25 821730000 99348000 185810000 161090000 0 0 0 37077000 36656000 37347000 0 0 0 34967000 43057000 31126000 0 0 0 59555000 54675000 41019000 0 0 0 9087 340 8860 169037;169038;169039;169040;169041;169042;169043;169044;169045;169046;169047;169048;169049;169050;169051;169052;169053;169054;169055;169056;169057;169058;169059;169060;169061;169062;169063;169064 104046;104047;104048;104049;104050;104051;104052;104053;104054;104055;104056;104057;104058;104059 104057 13 HYNPDELVLGK Unmodified 1283.651 0.65100113 55 P00944 xylA Xylose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.446 23.524 2 5.7135E-05 10261 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.03 121.72 68763000 15504000 13513000 12471000 0 0 0 2916200 4310400 4606400 0 0 0 3429000 1923900 1775600 0 0 0 2726000 2896200 2691700 0 0 0 9088 55 8861 169065;169066;169067;169068;169069;169070;169071;169072;169073;169074;169075;169076 104060;104061;104062;104063 104061 4 HYPAPITAVK Unmodified 1095.6077 0.60767975 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 16.283 17.145 2 0.00071946 5901 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.948 77.437 108280000 34388000 37940000 32719000 0 769900 709510 0 0 0 0 0 0 0 0 1751400 0 0 0 0 0 0 0 0 0 9089 1173 8862 169077;169078;169079;169080;169081;169082 104064;104065;104066;104067 104066 4 HYPLEADNIFAAIAATNR Unmodified 1985.9959 0.99592426 978 P0AG16 purF Amidophosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 2 1 2 2 1 1 50.442 49.062 2;3 2.7379E-14 23885 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.62 145.96 170280000 42325000 37234000 33158000 0 0 0 4957300 1604500 0 0 0 0 6886300 4777300 8558600 0 0 0 12407000 11332000 7041500 0 0 0 9090 978 8863 169083;169084;169085;169086;169087;169088;169089;169090;169091;169092;169093;169094;169095;169096;169097;169098;169099 104068;104069;104070;104071;104072;104073;104074 104072 5 HYQSGAAMPDELQQK Unmodified 1701.7781 0.77806891 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.91 17.668 2;3 3.6874E-20 6252 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 257.19 257.19 550760000 74509000 64423000 64274000 0 0 0 60245000 58611000 52976000 0 0 0 20658000 20411000 21499000 0 0 0 36549000 42451000 34158000 0 0 0 9091 1233 8864 169100;169101;169102;169103;169104;169105;169106;169107;169108;169109;169110;169111;169112;169113;169114;169115;169116;169117;169118;169119;169120;169121;169122;169123 104075;104076;104077;104078;104079;104080;104081;104082;104083;104084;104085;104086;104087;104088;104089;104090;104091;104092;104093;104094;104095 104091 21 HYSQSLK Unmodified 861.43447 0.43446642 1595 P51025 frmB S-formylglutathione hydrolase FrmB yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 6.4828 7.2616 2 0.017702 1565 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 79.469 71.797 11641000 990500 0 0 0 0 0 5630100 2796000 2224200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9092 1595 8865 169124;169125;169126;169127 104096 104096 1 HYSVEEWQAFINNSSADVLK Unmodified 2336.1073 0.1073252 1623 P60560 guaC GMP reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 49.596 48.209 2;3 1.9716E-81 23580 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 322.99 316.11 1073300000 100970000 90990000 96595000 0 0 776100 87483000 63202000 60659000 0 0 0 82334000 81821000 74172000 0 0 0 122080000 109000000 103210000 0 0 0 9093 1623 8866 169128;169129;169130;169131;169132;169133;169134;169135;169136;169137;169138;169139;169140;169141;169142;169143;169144;169145;169146;169147;169148;169149;169150;169151;169152 104097;104098;104099;104100;104101;104102;104103;104104;104105;104106;104107;104108;104109;104110;104111;104112;104113;104114;104115;104116;104117 104111 21 HYTAADGSEISLHGR Unmodified 1612.7594 0.75938238 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.997 14.862 3 2.8403E-27 4837 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.81 182.93 1516200000 288500000 270070000 221860000 0 0 0 116010000 115450000 97832000 0 0 0 47814000 44513000 53874000 0 0 0 86876000 85071000 88347000 0 0 0 9094 1465 8867 169153;169154;169155;169156;169157;169158;169159;169160;169161;169162;169163;169164 104118;104119;104120;104121;104122;104123;104124;104125 104122 8 HYVELLEGTNTQLLDTR Unmodified 2001.0167 0.016719282 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.67 37.04 3 9.5166E-10 18067 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.84 127.29 108410000 15374000 10458000 10872000 0 0 0 12556000 0 11749000 0 0 0 7274300 5819800 4711700 0 0 0 10900000 9526300 9171100 0 0 0 9095 1334 8868 169165;169166;169167;169168;169169;169170;169171;169172;169173;169174;169175 104126;104127;104128;104129;104130 104127 5 IAAANVPAFVSGK Unmodified 1243.6925 0.69247202 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 3 2 2 3 3 3 2 2 2 3 3 3 2 2 3 31.91 30.509 2;3 7.9323E-07 11975 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 139.86 88.512 40592000000 2469500000 2092100000 2032800000 68624000 61572000 63824000 3441400000 3469300000 3372100000 843460000 745660000 662540000 2676200000 2849600000 2525000000 1368900000 969900000 852670000 2850400000 3092500000 2895700000 384810000 383540000 419650000 9096 726 8869 169176;169177;169178;169179;169180;169181;169182;169183;169184;169185;169186;169187;169188;169189;169190;169191;169192;169193;169194;169195;169196;169197;169198;169199;169200;169201;169202;169203;169204;169205;169206;169207;169208;169209;169210;169211;169212;169213;169214;169215;169216;169217;169218;169219;169220;169221;169222;169223;169224;169225;169226;169227;169228;169229;169230;169231;169232;169233;169234 104131;104132;104133;104134;104135;104136;104137;104138;104139;104140;104141;104142;104143;104144;104145;104146;104147;104148;104149;104150;104151;104152;104153;104154;104155;104156;104157;104158;104159;104160;104161;104162;104163;104164;104165;104166;104167;104168;104169;104170;104171;104172;104173;104174;104175;104176;104177 104138 47 IAADELK Unmodified 758.41742 0.41741937 1999 yes yes 0 0 0 By MS/MS 1 13.253 14.009 2 0.12951 4304 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 51.572 7.0412 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 9097 1999 8870 169235 104178 104178 1 IAADIDDSELKAPR Unmodified 1512.7784 0.77838649 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.168 23.099 3 1.0251E-05 8250 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 92.039 85.763 65077000 0 0 0 1948700 2405000 2008600 8052500 5808900 5859000 12209000 6191500 9323400 0 0 2732800 0 0 1227300 0 0 0 2688600 2102000 2520000 9098 1476 8871 169236;169237;169238;169239;169240;169241;169242;169243;169244;169245;169246;169247;169248;169249 104179;104180 104179 2 IAADLNMPVFMHCR Unmodified 1673.784 0.78402269 1314 P27859 tatD Tat-linked quality control protein TatD yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 38.57 37.086 3 0.00062247 17347 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 66.023 61.921 54275000 6478000 4823100 6278000 0 0 0 0 0 0 0 0 0 6292700 6533200 5420100 0 0 0 0 7906700 10544000 0 0 0 9099 1314 8872 169250;169251;169252;169253;169254;169255;169256;169257 104181;104182 104182 1 IAAEDPSVAEQAK Unmodified 1327.662 0.66195975 2004 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 2 2 1 1 1 2 23.377 22.491 2 0.031663 7501 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 44.753 19.616 127570000 0 0 0 12866000 10153000 10714000 0 0 0 9307300 19090000 23799000 0 0 0 6461800 0 0 0 0 0 10629000 6806100 17740000 + 9100 2004 8873 169258;169259;169260;169261;169262;169263;169264;169265;169266;169267;169268;169269;169270 104183;104184;104185 104185 3 IAAEEGK Unmodified 716.37047 0.37046918 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 7.8459 8.6988 2 0.0060552 1867 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 97.071 32.295 108060000 26516000 0 0 0 0 0 0 0 333320 0 0 0 0 0 0 0 0 0 26118000 28684000 26412000 0 0 0 9101 158 8874 169271;169272;169273;169274;169275 104186 104186 1 IAAEEIENLLLR Unmodified 1382.7769 0.77692993 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.604 51.352 2 7.8702E-24 25014 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 244.55 228.67 305830000 14473000 13745000 13402000 0 0 0 13522000 11485000 12981000 0 0 0 20460000 23016000 24126000 0 0 0 59935000 53934000 44751000 0 0 0 9102 1055 8875 169276;169277;169278;169279;169280;169281;169282;169283;169284;169285;169286;169287 104187;104188;104189;104190;104191 104188 5 IAAEMGAQIIK Unmodified 1143.6322 0.63217995 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.23 27.002 2 0.00029102 12318 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.838 58.451 293160000 83100000 96087000 82951000 0 0 0 5053800 5719800 5545100 0 0 0 2875400 2605200 3187800 0 0 0 0 3599400 2438300 0 0 0 9103 1822 8876 169288;169289;169290;169291;169292;169293;169294;169295;169296;169297;169298 104192 104192 1 IAAGADISK Unmodified 844.46543 0.46543219 727 P0ACF4 hupB DNA-binding protein HU-beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 2 2 2 1 1 1 2 3 2 1 1 1 12.923 13.668 2 0.00037215 3147 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 111.95 78.209 22451000000 1750700000 1537700000 1543900000 60433000 54834000 58848000 1818700000 1977100000 1761800000 0 0 0 1783700000 1507600000 1516800000 706580000 624950000 699240000 1712600000 1637400000 1503100000 77661000 59890000 57608000 9104 727 8877 169299;169300;169301;169302;169303;169304;169305;169306;169307;169308;169309;169310;169311;169312;169313;169314;169315;169316;169317;169318;169319;169320;169321;169322;169323;169324;169325;169326;169327;169328;169329;169330;169331 104193;104194;104195;104196;104197;104198;104199;104200;104201;104202;104203;104204;104205;104206;104207;104208;104209;104210;104211;104212;104213;104214;104215 104194 20 IAAGCGMQVQDVNR Unmodified 1517.7079 0.70788086 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.527 20.717 2 6.624E-27 8095 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 243.53 234.21 512320000 26770000 32125000 25182000 5567800 5843700 6231900 28207000 27644000 22793000 34456000 28770000 29037000 24354000 22901000 26683000 5517400 2898000 2974700 44304000 32924000 35934000 14147000 13687000 13371000 9105 1009 8878 169332;169333;169334;169335;169336;169337;169338;169339;169340;169341;169342;169343;169344;169345;169346;169347;169348;169349;169350;169351;169352;169353;169354;169355 104216;104217;104218;104219;104220;104221;104222;104223;104224;104225;104226;104227;104228;104229;104230;104231;104232;104233;104234;104235;104236;104237;104238 104234 23 IAAGDTSNLGDTSTLADPGVVEK Unmodified 2230.0965 0.096485745 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 1 1 1 1 1 2 2 2 34.922 33.487 2;3 2.114E-21 16075 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 207.21 188.38 1816400000 625800000 585990000 536230000 0 1491400 0 4225900 3409600 2353900 0 0 0 3115000 3275200 4357500 0 0 0 16260000 14399000 15520000 0 0 0 9106 1305 8879 169356;169357;169358;169359;169360;169361;169362;169363;169364;169365;169366;169367;169368;169369;169370;169371;169372;169373;169374;169375 104239;104240;104241;104242;104243;104244 104239 6 IAAGQPLSIK Unmodified 996.59678 0.59678072 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 22.213 21.86 2 3.3652E-05 9345 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.37 120.35 4483900000 277700000 248830000 214870000 3474600 3945900 3841000 358590000 396430000 376370000 0 1399800 2753100 399150000 316260000 297710000 3209600 1553400 1330100 540660000 525240000 501500000 961300 1494000 6643000 9107 1236 8880 169376;169377;169378;169379;169380;169381;169382;169383;169384;169385;169386;169387;169388;169389;169390;169391;169392;169393;169394;169395;169396;169397;169398;169399;169400;169401;169402;169403;169404;169405;169406 104245;104246;104247;104248;104249;104250;104251;104252;104253;104254;104255;104256;104257;104258;104259;104260;104261 104250 17 IAAIDYTLAHDDGISLR Unmodified 1842.9476 0.94757708 414 P0A8A4 ppsR Phosphoenolpyruvate synthase regulatory protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.29 38.559 3 5.2269E-07 19233 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.6 88.915 310190000 45517000 45114000 37696000 787440 1037400 705290 21594000 22703000 27002000 0 969080 0 13883000 17031000 13497000 0 0 0 19039000 20962000 22652000 0 0 0 9108 414 8881 169407;169408;169409;169410;169411;169412;169413;169414;169415;169416;169417;169418;169419;169420;169421;169422 104262;104263;104264;104265;104266;104267;104268 104262 7 IAAIPGDGIGK Unmodified 1010.576 0.57604528 1843 P76251 dmlA D-malate dehydrogenase [decarboxylating] yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 24.498 23.597 2 0.0025379 10472 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 70.056 40.907 74459000 12072000 11973000 9600700 0 0 0 0 0 14099000 0 0 0 3954700 3306200 3533800 0 0 0 4324100 5233300 6363000 0 0 0 9109 1843 8882 169423;169424;169425;169426;169427;169428;169429;169430;169431;169432 104269 104269 1 IAALMDK Oxidation (M) 776.41023 0.4102255 1079 P12758 udp Uridine phosphorylase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 12.943 13.807 2 0.035862 4151 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 68.915 33.809 120350000 0 0 0 0 0 0 29767000 33625000 31280000 0 0 0 7851400 0 7092300 0 0 0 10731000 0 0 0 0 0 9110 1079 8883 169433;169434;169435;169436;169437;169438 104270;104271;104272 104271 481 3 IAALMDK Unmodified 760.41531 0.41531088 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 17.407 18.094 2 0.0028071 6578 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.61 65.639 2501300000 49611000 49373000 43220000 0 0 0 437640000 412210000 374020000 0 0 0 190090000 213140000 181210000 0 0 0 157460000 192020000 201340000 0 0 0 9111 1079 8883 169439;169440;169441;169442;169443;169444;169445;169446;169447;169448;169449;169450;169451 104273;104274;104275;104276;104277;104278;104279;104280;104281;104282;104283;104284 104280 9 IAALMDKPVK Unmodified 1084.6315 0.63145166 1079 P12758 udp Uridine phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 1 1 2 2 2 1 1 16.661 17.255 2;3 0.00029831 6083 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.087 86.747 37002000000 919680000 943710000 752040000 10809000 11106000 12150000 6387900000 5787700000 5778900000 16310000 15681000 10959000 3236300000 2576900000 2521900000 3426900 0 1150200 2488300000 2880100000 2642700000 2756500 0 1641400 9112 1079 8884 169452;169453;169454;169455;169456;169457;169458;169459;169460;169461;169462;169463;169464;169465;169466;169467;169468;169469;169470;169471;169472;169473;169474;169475;169476;169477;169478;169479;169480;169481;169482;169483;169484;169485;169486;169487;169488;169489;169490;169491;169492;169493 104285;104286;104287;104288;104289;104290;104291;104292;104293;104294;104295;104296;104297;104298;104299;104300;104301;104302;104303;104304;104305;104306;104307;104308;104309;104310;104311;104312;104313;104314;104315;104316;104317;104318 104295 34 IAALMDKPVK Oxidation (M) 1100.6264 0.62636629 1079 P12758 udp Uridine phosphorylase yes yes 0 1 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 4 3 3 4 4 3 3 2 1 14.016 14.843 2;3 0.0021898 4155 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 67.334 62.44 1153300000 22757000 22480000 33671000 0 0 742480 261500000 265850000 217310000 0 0 0 97788000 67634000 42763000 0 0 0 64335000 32901000 23601000 0 0 0 9113 1079 8884 169494;169495;169496;169497;169498;169499;169500;169501;169502;169503;169504;169505;169506;169507;169508;169509;169510;169511;169512;169513;169514;169515;169516;169517;169518;169519;169520;169521;169522;169523;169524;169525;169526;169527 104319;104320;104321;104322;104323;104324;104325;104326;104327;104328;104329;104330;104331;104332;104333;104334;104335;104336 104319 481 16 IAAQALVK Unmodified 812.51199 0.51198846 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 1 1 1 17.551 18.053 1;2 0.00079634 6564 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 122.79 89.052 1647600000 195380000 223750000 241660000 10065000 9044200 10277000 99542000 92868000 82104000 11961000 10593000 9221600 68454000 68853000 62284000 3492600 1754800 0 138290000 152680000 138460000 5437300 5865300 5600500 9114 1302 8885 169528;169529;169530;169531;169532;169533;169534;169535;169536;169537;169538;169539;169540;169541;169542;169543;169544;169545;169546;169547;169548;169549;169550;169551;169552;169553;169554;169555;169556;169557;169558;169559;169560;169561;169562;169563;169564;169565 104337;104338;104339;104340;104341;104342;104343;104344;104345;104346;104347;104348;104349;104350;104351;104352;104353;104354;104355;104356;104357;104358 104347 21 IAATDGEK Unmodified 803.4025 0.40249759 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.227 10.916 2 0.0010066 2300 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.89 72.587 1108400000 0 103190000 0 0 0 305580 36656000 47619000 36399000 7966100 6734400 4885000 203030000 209300000 199830000 0 0 0 0 252450000 0 0 0 0 9115 107 8886 169566;169567;169568;169569;169570;169571;169572;169573;169574;169575;169576;169577 104359;104360;104361;104362;104363;104364;104365;104366;104367;104368;104369;104370;104371 104362 12 IAATMENAQK Unmodified 1075.5332 0.53319418 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 12.32 13.055 2 3.947E-12 3707 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 203.93 140.37 6969400000 126340000 152240000 130460000 0 0 0 677380000 695890000 715380000 0 0 0 731440000 712190000 603780000 0 0 0 825990000 787080000 799480000 3885900 4386500 3520900 9116 895 8887 169578;169579;169580;169581;169582;169583;169584;169585;169586;169587;169588;169589;169590;169591;169592;169593 104372;104373;104374;104375;104376;104377;104378;104379;104380;104381;104382;104383;104384 104377 13 IAATMENAQK Oxidation (M) 1091.5281 0.5281088 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 10.47 11.375 2 5.8315E-05 2523 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 137.9 105.06 423820000 0 0 0 0 0 0 0 0 0 0 0 0 55648000 49303000 52460000 0 0 0 104570000 83280000 78562000 0 0 0 9117 895 8887 169594;169595;169596;169597;169598;169599 104385;104386;104387 104385 409 3 IAATMENAQKGEIMPNIPQMSAFWYAVR Unmodified 3166.5402 0.54021718 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 53.536 52.104 3 7.6273E-17 25502 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.39 142.9 147140000 0 0 0 0 0 0 0 15507000 16170000 0 0 0 15956000 10683000 12008000 0 0 0 22767000 29543000 24506000 0 0 0 9118 895 8888 169600;169601;169602;169603;169604;169605;169606;169607 104388;104389;104390 104388 3 IAATNAISDIFAMGGK Unmodified 1578.8076 0.80757813 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.997 49.741 2;3 7.0647E-14 24503 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 174.42 167.88 686000000 55456000 48038000 57586000 0 0 0 70662000 79422000 67893000 0 0 0 45723000 48513000 49641000 0 0 0 59156000 51069000 52838000 0 0 0 9119 1119 8889 169608;169609;169610;169611;169612;169613;169614;169615;169616;169617;169618;169619;169620;169621;169622;169623;169624;169625;169626;169627;169628;169629;169630;169631 104391;104392;104393;104394;104395;104396;104397;104398;104399;104400 104393 10 IAAVAEDGEPCVTYIGADGAGHYVK Unmodified 2562.2061 0.20605297 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 1 3 3 3 1 1 1 3 3 3 1 1 1 34.01 32.602 2;3;4 9.3055E-22 15791 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 232.26 230.39 25409000000 1575500000 1491900000 1532300000 5173700 7395900 7473000 2344700000 2498700000 1967400000 0 0 4762500 2096900000 2237800000 2157000000 3030000 2617500 4049200 2506000000 2624200000 2327100000 3595100 5724600 6027600 9120 24 8890 169632;169633;169634;169635;169636;169637;169638;169639;169640;169641;169642;169643;169644;169645;169646;169647;169648;169649;169650;169651;169652;169653;169654;169655;169656;169657;169658;169659;169660;169661;169662;169663;169664;169665;169666;169667;169668;169669;169670;169671;169672;169673;169674;169675;169676;169677 104401;104402;104403;104404;104405;104406;104407;104408;104409;104410;104411;104412;104413;104414;104415;104416;104417;104418;104419;104420;104421;104422;104423;104424;104425;104426;104427;104428;104429;104430;104431;104432;104433;104434;104435;104436;104437;104438;104439;104440;104441;104442;104443;104444;104445;104446 104408 46 IAAVLQHVNSNYDIDLFR Unmodified 2087.08 0.079988241 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 1 1 1 2 2 3 1 1 1 2 3 3 43.888 42.457 2;3 1.3695E-80 20556 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 322.23 314.5 2833400000 247860000 232060000 216820000 0 0 0 274170000 245060000 234850000 13829000 16178000 8794700 209090000 186490000 173060000 5245800 4905300 5029800 271310000 270290000 218390000 0 0 0 9121 59 8891 169678;169679;169680;169681;169682;169683;169684;169685;169686;169687;169688;169689;169690;169691;169692;169693;169694;169695;169696;169697;169698;169699;169700;169701;169702;169703;169704;169705;169706;169707;169708;169709;169710;169711 104447;104448;104449;104450;104451;104452;104453;104454;104455;104456;104457;104458;104459;104460;104461;104462;104463;104464;104465;104466;104467;104468;104469 104459 23 IAAVTVTGSVR Unmodified 1072.6241 0.6240581 1825 P76149 sad Succinate semialdehyde dehydrogenase [NAD(P)+] Sad yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 21.367 21.631 2 0.0010906 8540 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.645 66.983 76913000 12972000 15948000 13834000 0 0 0 8944100 4849700 7014200 0 0 0 0 0 0 0 0 0 7413600 5937300 0 0 0 0 9122 1825 8892 169712;169713;169714;169715;169716;169717;169718;169719 104470 104470 1 IAAYGPHAANVVGLTDQTDLFYTMK Unmodified 2695.3316 0.33158783 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 46.76 45.281 2;3 5.517E-60 22543 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 294.38 284.18 3112400000 0 0 0 0 0 0 282640000 294820000 289570000 0 0 0 398110000 394810000 296840000 0 0 0 388830000 384250000 375440000 7095600 0 0 9123 38 8893 169720;169721;169722;169723;169724;169725;169726;169727;169728;169729;169730;169731;169732;169733;169734;169735;169736;169737;169738 104471;104472;104473;104474;104475;104476;104477;104478;104479;104480;104481;104482;104483;104484;104485;104486;104487;104488;104489 104472 19 IAAYGPHAANVVGLTDQTDLFYTMKAALGLK Unmodified 3248.6904 0.69037011 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 54.28 52.818 3;4 7.1171E-33 24861 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 191.42 169.8 1943000000 0 0 0 0 0 0 307560000 252230000 198930000 0 0 0 257590000 215990000 254370000 0 0 0 167720000 147520000 141040000 0 0 0 9124 38 8894 169739;169740;169741;169742;169743;169744;169745;169746;169747;169748;169749;169750;169751;169752;169753;169754;169755;169756 104490;104491;104492;104493 104493 4 IACFGLAFKPNIDDLR Unmodified 1848.9556 0.95563935 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 45.027 43.629 3 0.0011891 21597 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.04 54.382 247260000 22091000 19299000 16519000 0 0 0 40203000 0 35052000 0 0 0 1689200 36271000 0 0 0 0 0 41529000 34606000 0 0 0 9125 1307 8895 169757;169758;169759;169760;169761;169762;169763;169764;169765 104494;104495 104494 2 IACLEEIAWR Unmodified 1259.6332 0.63324258 1641 P61887 rmlA2 Glucose-1-phosphate thymidylyltransferase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 41.394 39.599 2 0.0015447 19284 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.639 83.485 160500000 0 0 0 0 0 0 18068000 17782000 19855000 0 0 0 16023000 18098000 16930000 0 0 0 26740000 0 26550000 0 457000 0 9126 1641 8896 169766;169767;169768;169769;169770;169771;169772;169773;169774 104496;104497;104498;104499;104500 104496 0 IADDQGLLLLDFK Unmodified 1459.7922 0.79224564 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.54 52.045 2 5.9031E-06 18935 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 144.65 131.53 66054000 0 0 0 6909500 6392000 7347000 13534000 14153000 14386000 1350700 1982100 0 0 0 0 0 0 0 0 0 0 0 0 0 9127 1528 8897 169775;169776;169777;169778;169779;169780;169781;169782 104501;104502;104503 104501 3 IADDQNSLR Unmodified 1030.5043 0.5043369 1174 P21179 katE Catalase HPII yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.424 13.273 2 0.00033506 3907 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.08 100.15 306680000 0 3743900 7098900 0 0 0 67242000 62711000 66045000 0 0 0 12528000 13248000 13727000 0 0 0 19240000 18658000 22441000 0 0 0 9128 1174 8898 169783;169784;169785;169786;169787;169788;169789;169790;169791;169792;169793 104504 104504 0 IADEARDDTPQALDAVWEEEQVK Unmodified 2627.2351 0.23510449 907 P0AF26 narJ Nitrate reductase molybdenum cofactor assembly chaperone NarJ yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 41.526 39.21 3 7.4651E-07 15399 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 104.67 104.52 30218000 0 0 0 0 0 0 0 0 0 5259600 4517100 4600800 0 0 0 0 0 0 0 0 0 5229000 5296700 5314800 9129 907 8899 169794;169795;169796;169797;169798;169799 104505;104506;104507 104506 3 IADELEK Unmodified 816.4229 0.42289868 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.91 14.646 2 0.010767 4640 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.472 51.58 839640000 68772000 55752000 53527000 0 0 0 66436000 73823000 67522000 4261800 0 0 55175000 55270000 54414000 0 0 1497800 95475000 97670000 90049000 0 0 0 9130 744 8900 169800;169801;169802;169803;169804;169805;169806;169807;169808;169809;169810;169811;169812;169813;169814;169815 104508;104509;104510;104511;104512;104513;104514;104515;104516;104517;104518 104512 11 IADELEKR Unmodified 972.52401 0.52400971 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.191 12.773 2 0.00046199 3610 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.11 109.29 389950000 0 41563000 43066000 0 0 0 37322000 34317000 5052300 6255000 5053600 5212300 35890000 25921000 0 4241900 0 1060200 46577000 50203000 44286000 0 3929400 0 9131 744 8901 169816;169817;169818;169819;169820;169821;169822;169823;169824;169825;169826;169827;169828;169829;169830;169831 104519;104520;104521;104522;104523;104524;104525;104526;104527;104528;104529 104526 11 IADETLALMR Unmodified 1131.5958 0.59579444 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.675 33.227 2 0.043376 16073 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 56.434 46.846 117320000 15382000 12566000 13799000 0 0 0 8318800 7128100 11414000 0 0 0 7080700 6366800 5506800 0 0 0 10215000 10241000 9306000 0 0 0 9132 134 8902 169832;169833;169834;169835;169836;169837;169838;169839;169840;169841;169842;169843 104530;104531;104532;104533;104534;104535;104536 104531 0 IADIYANCGITK Unmodified 1337.6649 0.66493664 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.274 24.979 2 1.5697E-06 10881 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 106.29 89.194 4675400000 474480000 385160000 417620000 1083200 1237900 1279200 671180000 599930000 649500000 0 1459600 1428200 335080000 0 0 0 0 0 410950000 380940000 344050000 0 0 0 9133 256 8903 169844;169845;169846;169847;169848;169849;169850;169851;169852;169853;169854;169855;169856;169857;169858;169859 104537;104538;104539;104540;104541;104542;104543;104544;104545;104546;104547;104548;104549;104550 104550 13 IADKHGR Unmodified 795.43514 0.43513512 893 P0AEX3 kgtP Alpha-ketoglutarate permease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 7.5814 8.0831 2 0.0078837 572 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 103.29 75.969 19030000 0 0 0 2007900 2088800 1965500 0 0 0 1450500 1853700 1996500 0 0 0 0 475250 232770 471610 481240 0 2223800 1766600 2015400 9134 893 8904 169860;169861;169862;169863;169864;169865;169866;169867;169868;169869;169870;169871;169872 104551;104552;104553;104554;104555;104556;104557;104558 104556 8 IADLRLEQFEVNQQR Unmodified 1857.9697 0.96970951 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 34.512 32.892 3 0.00019925 11437 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 54.501 46.989 8268800 0 0 0 3341300 2443400 2484200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9135 1899 8905 169873;169874;169875 104559;104560 104559 2 IADQGEEGIVEADSADGSFMDELLTLMAAHR Unmodified 3290.5071 0.50712195 1174 P21179 katE Catalase HPII yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.625 54.152 3 9.0076E-43 26688 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206 204 324880000 63008000 55896000 57819000 0 0 0 26671000 32360000 29928000 0 0 0 5789800 7279200 7234300 0 0 0 15067000 11139000 12688000 0 0 0 9136 1174 8906 169876;169877;169878;169879;169880;169881;169882;169883;169884;169885;169886;169887 104561;104562 104562 2 IADQISDAVLDAILEQDPK Unmodified 2053.0579 0.057915395 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 2 1 1 2 2 2 2 55.099 53.607 2;3 3.7512E-14 26605 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.46 138.01 5301700000 478420000 507380000 477500000 0 0 0 633250000 514670000 550680000 6693800 7401100 17252000 158570000 140760000 399140000 0 0 0 493530000 426320000 490140000 0 0 0 9137 388 8907 169888;169889;169890;169891;169892;169893;169894;169895;169896;169897;169898;169899;169900;169901;169902;169903;169904;169905;169906;169907;169908;169909;169910;169911;169912;169913 104563;104564;104565;104566;104567;104568;104569;104570;104571;104572 104565 10 IADQLIVGGGIANTFIAAQGHDVGK Unmodified 2464.3074 0.30742199 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 6 6 7 1 1 1 5 5 6 1 1 1 5 6 5 1 1 6 6 6 49.213 47.88 2;3;4 1.6019E-71 23096 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 337.43 336.12 14989000000 1336900000 1355100000 1163900000 11847000 7372600 6393400 2065400000 1806300000 1889500000 6930900 5013900 5899500 788150000 708440000 779210000 4018000 1511900 0 1015800000 1058800000 973060000 0 0 0 9138 321 8908 169914;169915;169916;169917;169918;169919;169920;169921;169922;169923;169924;169925;169926;169927;169928;169929;169930;169931;169932;169933;169934;169935;169936;169937;169938;169939;169940;169941;169942;169943;169944;169945;169946;169947;169948;169949;169950;169951;169952;169953;169954;169955;169956;169957;169958;169959;169960;169961;169962;169963;169964;169965;169966;169967;169968;169969;169970;169971;169972;169973;169974;169975;169976;169977;169978;169979;169980;169981;169982;169983;169984;169985;169986;169987;169988;169989;169990 104573;104574;104575;104576;104577;104578;104579;104580;104581;104582;104583;104584;104585;104586;104587;104588;104589;104590;104591;104592;104593;104594;104595;104596;104597;104598;104599;104600;104601;104602;104603;104604;104605;104606;104607;104608;104609;104610;104611;104612;104613;104614;104615;104616;104617;104618;104619;104620;104621;104622;104623;104624;104625;104626;104627;104628;104629;104630;104631;104632;104633;104634;104635;104636;104637;104638;104639;104640;104641;104642;104643;104644;104645;104646;104647;104648;104649;104650;104651;104652;104653;104654;104655;104656;104657;104658;104659 104591 82 IADTSLPLDELVADPVTAVEK Unmodified 2195.1573 0.15729509 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1 2 2 2 2 3 2 2 2 2 2 2 1 2 3 2 2 3 2 2 54.305 53.015 2;3 6.1595E-10 21148 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 157.23 143.82 936930000 40868000 37001000 36418000 26874000 12967000 21342000 22972000 20262000 14703000 18161000 38013000 34426000 37970000 34307000 37343000 14271000 8210400 12866000 87189000 94498000 101560000 61925000 62308000 60477000 9139 215 8909 169991;169992;169993;169994;169995;169996;169997;169998;169999;170000;170001;170002;170003;170004;170005;170006;170007;170008;170009;170010;170011;170012;170013;170014;170015;170016;170017;170018;170019;170020;170021;170022;170023;170024;170025;170026;170027;170028;170029;170030;170031;170032;170033;170034;170035;170036;170037;170038;170039;170040 104660;104661;104662;104663;104664;104665;104666;104667;104668;104669;104670;104671;104672;104673;104674;104675;104676;104677;104678 104667 19 IADVSVTTTEEQR Unmodified 1447.7155 0.71545188 1848 P76291 cmoB tRNA (mo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 19.625 20.089 2 3.1143E-06 7932 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 161.67 157.91 111650000 15740000 0 0 0 0 0 7704400 10576000 11686000 0 0 0 11768000 12364000 10081000 0 0 0 10484000 12543000 8704400 0 0 0 9140 1848 8910 170041;170042;170043;170044;170045;170046;170047;170048;170049;170050 104679;104680;104681;104682;104683;104684 104679 5 IAEAAVVGIPHNIK Unmodified 1430.8245 0.82454882 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 26.791 25.617 2;3 4.5354E-08 11579 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.46 108.76 4693600000 1671400000 1408400000 1418300000 0 2908800 0 13139000 19296000 13492000 0 0 0 11168000 14327000 17437000 0 0 0 35739000 36005000 31978000 0 0 0 9141 1305 8911 170051;170052;170053;170054;170055;170056;170057;170058;170059;170060;170061;170062;170063;170064;170065;170066;170067;170068;170069;170070;170071;170072;170073 104685;104686;104687;104688;104689;104690;104691;104692;104693;104694;104695;104696;104697;104698 104690 14 IAEAAWQVNESTENIGAR Unmodified 1957.9494 0.949368 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 1 1 1 2 2 2 2 33.012 31.486 2;3 4.7755E-45 14918 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 319.58 307.66 1358100000 54351000 29400000 38820000 16786000 15232000 15824000 146000000 140590000 124820000 43708000 42757000 41224000 120480000 49359000 56158000 12714000 7623200 5166700 71313000 71973000 165120000 31987000 27863000 28834000 9142 245 8912 170074;170075;170076;170077;170078;170079;170080;170081;170082;170083;170084;170085;170086;170087;170088;170089;170090;170091;170092;170093;170094;170095;170096;170097;170098;170099;170100;170101;170102;170103;170104;170105;170106;170107;170108;170109;170110;170111;170112;170113 104699;104700;104701;104702;104703;104704;104705;104706;104707;104708;104709;104710;104711;104712;104713;104714;104715;104716;104717;104718;104719;104720;104721;104722;104723;104724;104725;104726;104727;104728;104729;104730;104731;104732;104733;104734;104735 104721 37 IAEACGITGIR Unmodified 1159.6019 0.60194245 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.894 22.999 2 1.9816E-05 9967 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 136.57 116.78 2116200000 338670000 320850000 293940000 7252600 17440000 20287000 267940000 257270000 246200000 11946000 9514900 10458000 42930000 40702000 44610000 1404900 683930 0 57492000 64477000 62121000 0 0 0 9143 147 8913 170114;170115;170116;170117;170118;170119;170120;170121;170122;170123;170124;170125;170126;170127;170128;170129;170130;170131;170132;170133 104736;104737;104738;104739;104740;104741;104742;104743;104744;104745;104746;104747 104742 12 IAECYVTAHPNAGLPNAFGEYDLDADTMAK Unmodified 3253.4696 0.46961423 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.362 43.754 3 6.7176E-07 17715 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 87.439 85.408 149960000 14953000 15627000 13671000 2650500 2746000 2622400 6871900 8258900 8627800 4364300 6733300 6247200 5956500 8625400 4468900 0 0 0 10517000 10954000 10894000 0 2802700 2370400 9144 1083 8914 170134;170135;170136;170137;170138;170139;170140;170141;170142;170143;170144;170145;170146;170147;170148;170149;170150;170151;170152;170153 104748;104749;104750 104748 3 IAEDGNPQVLIK Unmodified 1295.7085 0.70851601 1053 P10346 glnQ Glutamine transport ATP-binding protein GlnQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.457 25.365 2 6.1972E-05 11411 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.03 107.33 328030000 38967000 37733000 29651000 10142000 8228100 10511000 5796100 8957400 13193000 4119900 4138600 3414800 23783000 25612000 23951000 2930700 1908600 2260100 19635000 21148000 19389000 4140700 3333500 5083900 9145 1053 8915 170154;170155;170156;170157;170158;170159;170160;170161;170162;170163;170164;170165;170166;170167;170168;170169;170170;170171;170172;170173;170174;170175;170176;170177 104751;104752;104753;104754;104755;104756;104757;104758;104759;104760;104761;104762;104763;104764;104765;104766;104767;104768;104769;104770;104771 104766 21 IAEDLGLVTAK Unmodified 1128.639 0.63903946 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.413 30.057 2 1.9753E-05 14188 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 136.63 114.94 417210000 53137000 39235000 34147000 0 0 0 27950000 23152000 25780000 0 0 0 33116000 29799000 27198000 0 0 0 38545000 43007000 42147000 0 0 0 9146 1272 8916 170178;170179;170180;170181;170182;170183;170184;170185;170186;170187;170188;170189 104772;104773;104774;104775 104772 4 IAEEGQR Unmodified 801.39808 0.39808091 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 2 2 3 1 7.9742 8.7024 2 0.00021486 1845 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 164.78 58.49 4581500000 203210000 198300000 276380000 14975000 12224000 11198000 900590000 941110000 854650000 13734000 7823200 7450900 156340000 159040000 134400000 13740000 14728000 15543000 211770000 197760000 227220000 0 9298400 0 9147 1741 8917 170190;170191;170192;170193;170194;170195;170196;170197;170198;170199;170200;170201;170202;170203;170204;170205;170206;170207;170208;170209;170210;170211;170212;170213;170214;170215;170216;170217;170218;170219;170220;170221;170222 104776;104777;104778;104779;104780;104781;104782;104783;104784;104785;104786;104787;104788;104789;104790;104791;104792;104793;104794;104795;104796;104797;104798;104799;104800;104801 104780 26 IAEIVCVQNEYNIAHR Unmodified 1927.9574 0.95743026 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.473 30.117 3 5.4033E-07 14192 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.42 103.28 282070000 61019000 55313000 52164000 0 0 0 19523000 20024000 19008000 0 0 0 9208300 8676700 8924200 0 0 0 10121000 7319200 10764000 0 0 0 9148 1278 8918 170223;170224;170225;170226;170227;170228;170229;170230;170231;170232;170233;170234 104802;104803;104804;104805;104806;104807;104808 104804 7 IAELAGFSVPENTK Unmodified 1474.7668 0.76675917 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 37.792 36.089 2;3 1.896E-14 17251 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 189.13 175.7 4578500000 409200000 426280000 328040000 135850000 128940000 143200000 453200000 445830000 419090000 55193000 74063000 79220000 204490000 189470000 221000000 11471000 7205900 7561400 178840000 165920000 177170000 106840000 106820000 103640000 9149 548 8919 170235;170236;170237;170238;170239;170240;170241;170242;170243;170244;170245;170246;170247;170248;170249;170250;170251;170252;170253;170254;170255;170256;170257;170258;170259;170260;170261;170262;170263;170264;170265;170266;170267;170268;170269;170270;170271;170272;170273;170274;170275;170276;170277;170278;170279 104809;104810;104811;104812;104813;104814;104815;104816;104817;104818;104819;104820;104821;104822;104823;104824;104825;104826;104827;104828;104829;104830;104831;104832;104833;104834;104835;104836;104837;104838;104839;104840;104841;104842 104838 34 IAELDKEVAER Unmodified 1271.6721 0.67213051 1285 P26647 plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.008 17.56 2 0.00017567 6537 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 119.53 105.41 56500000 0 2182100 0 860340 0 0 5374200 5265200 8072600 2413900 2510100 1884500 2586100 2855000 4990600 0 0 0 6742500 4222800 5063300 0 1476900 0 9150 1285 8920 170280;170281;170282;170283;170284;170285;170286;170287;170288;170289;170290;170291;170292;170293;170294 104843;104844;104845;104846;104847 104845 5 IAELEAALANK Unmodified 1141.6343 0.63428844 1871 P76550 yffS Uncharacterized protein YffS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.364 28.944 2 0.00017926 9889 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 107.15 101.95 151790000 24284000 22337000 19328000 1782700 1898400 2936000 8654800 7225500 8407100 0 0 0 6835500 7446500 5181800 0 0 0 8951100 10247000 10024000 0 6247300 0 9151 1871 8921 170295;170296;170297;170298;170299;170300;170301;170302;170303;170304;170305;170306;170307;170308;170309;170310 104848;104849;104850;104851;104852;104853;104854;104855;104856;104857;104858 104853 8 IAELTAQR Unmodified 900.50288 0.50288033 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 16.368 17.121 2 0.017757 5186 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.671 57.221 421400000 0 102490000 93156000 0 0 1552300 0 1688100 0 0 0 0 73991000 58758000 68263000 0 0 0 0 11407000 10093000 0 0 0 9152 1333 8922 170311;170312;170313;170314;170315;170316;170317;170318;170319;170320 104859;104860;104861;104862;104863 104861 2 IAEMEAMK Unmodified 921.42997 0.42997466 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 17.19 17.993 2 0.098937 4898 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 49.442 28.743 15183000 0 0 0 3761200 3262900 2381500 0 0 0 0 0 0 5777400 0 0 0 0 0 0 0 0 0 0 0 9153 114 8923 170321;170322;170323;170324 104864;104865 104864 2 IAEMEAMKR Unmodified 1077.5311 0.53108569 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 12.931 14.018 3 0.00017182 3181 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 111.95 104.3 38223000 0 0 0 14904000 11825000 11493000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9154 114 8924 170325;170326;170327 104866;104867;104868 104868 3 IAENFDVWDFR Unmodified 1410.6568 0.65681479 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.621 49.243 2 1.1939E-10 24077 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 196.88 170.83 1479600000 246680000 227850000 208840000 0 0 0 200790000 188450000 170340000 0 0 0 38576000 28264000 35769000 0 0 0 44763000 46237000 43060000 0 0 0 9155 1960 8925 170328;170329;170330;170331;170332;170333;170334;170335;170336;170337;170338;170339 104869;104870;104871;104872;104873;104874 104873 6 IAEQDPNWETF Unmodified 1348.5935 0.59354583 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 46.375 44.946 2 0.040695 21942 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 49.536 49.536 73066000 11064000 9509700 9464100 13777000 14903000 14348000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9156 151 8926 170340;170341;170342;170343;170344;170345 104875;104876;104877;104878;104879 104878 5 IAEQEGIAEDGYR Unmodified 1449.6736 0.67358707 725 P0ACE7 hinT HIT-like protein HinT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 20.548 20.748 2 1.4494E-12 8454 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 225.31 201.99 3061800000 277850000 316930000 262310000 4972900 5372200 5365600 270370000 281390000 278540000 5404100 5418300 4664000 213730000 216250000 197570000 0 2429900 0 239550000 233490000 226870000 4778700 3521600 5011900 9157 725 8927 170346;170347;170348;170349;170350;170351;170352;170353;170354;170355;170356;170357;170358;170359;170360;170361;170362;170363;170364;170365;170366;170367;170368;170369 104880;104881;104882;104883;104884;104885;104886;104887;104888;104889;104890;104891;104892;104893;104894;104895;104896 104883 14 IAEQHNISR Unmodified 1066.552 0.55195579 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 2 2 2 1 2 2 2 2 2 2 2 1 1 2 10.629 11.285 2;3 0.0009355 2231 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 97.431 90.981 290150000 5033700 2979700 3689800 0 0 0 29418000 29927000 23039000 8261000 7686600 15198000 24471000 21937000 16919000 0 0 0 42318000 35750000 13207000 0 4564000 5750300 9158 975 8928 170370;170371;170372;170373;170374;170375;170376;170377;170378;170379;170380;170381;170382;170383;170384;170385;170386;170387;170388;170389;170390;170391;170392;170393;170394;170395;170396;170397 104897;104898;104899 104897 3 IAEQNVIHSPLPQGQQWTR Unmodified 2201.1341 0.13414908 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.242 29.886 2;3 1.0064E-17 14319 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.29 158.75 972110000 92321000 81740000 70579000 0 0 0 91878000 87803000 92659000 0 0 0 74671000 85961000 62434000 0 0 0 76799000 77681000 77589000 0 0 0 9159 880 8929 170398;170399;170400;170401;170402;170403;170404;170405;170406;170407;170408;170409;170410;170411;170412;170413;170414;170415;170416;170417;170418;170419;170420;170421 104900;104901;104902;104903;104904;104905;104906;104907;104908;104909;104910;104911;104912;104913 104901 14 IAEVDGNDPLFK Unmodified 1316.6612 0.66123147 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.851 32.462 2 1.0673E-06 15639 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 112.71 102.76 966440000 180710000 167570000 154900000 2459900 1902300 1757200 0 0 0 0 0 0 51176000 47588000 49344000 0 0 0 100590000 106100000 102350000 0 0 0 9160 34 8930 170422;170423;170424;170425;170426;170427;170428;170429;170430;170431;170432;170433;170434;170435 104914;104915;104916;104917;104918;104919;104920;104921;104922;104923;104924 104915 11 IAEVGAR Unmodified 714.40244 0.40243801 1849 P76298 flhA Flagellar biosynthesis protein FlhA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 2 1 1 2 2 1 1 1 2 1 1 1 1 13.231 13.738 2 0.0016613 3319 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 126.05 28.016 8595700000 250980000 234970000 220600000 0 0 0 24858000 15005000 0 202390000 184380000 200570000 214140000 204160000 193690000 1790600000 1531800000 1657000000 264410000 294100000 1639300 359750000 399920000 350690000 9161 1849 8931 170436;170437;170438;170439;170440;170441;170442;170443;170444;170445;170446;170447;170448;170449;170450;170451;170452;170453;170454;170455;170456;170457;170458;170459;170460;170461 104925;104926;104927;104928;104929;104930;104931;104932;104933;104934;104935;104936;104937;104938 104931 11 IAEVRPQVSGIILK Unmodified 1521.9243 0.92426287 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 2 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 30.735 29.327 2;3 1.1229E-08 13675 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 155.88 111.7 1829000000 60865000 59199000 73584000 16213000 15815000 17197000 176520000 144250000 137210000 61850000 93662000 93161000 87339000 67022000 55184000 30930000 20880000 21121000 170490000 174790000 142110000 36525000 34494000 38590000 9162 826 8932 170462;170463;170464;170465;170466;170467;170468;170469;170470;170471;170472;170473;170474;170475;170476;170477;170478;170479;170480;170481;170482;170483;170484;170485;170486;170487;170488;170489;170490;170491;170492;170493;170494;170495;170496;170497;170498;170499;170500;170501;170502;170503;170504;170505;170506;170507;170508 104939;104940;104941;104942;104943;104944;104945;104946;104947;104948;104949;104950;104951;104952;104953;104954;104955;104956;104957;104958;104959;104960;104961;104962;104963;104964;104965;104966;104967;104968;104969;104970;104971;104972;104973;104974;104975;104976;104977;104978;104979;104980;104981 104965 43 IAFESAR Unmodified 792.413 0.41300269 1336 P30125 leuB 3-isopropylmalate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.379 17.169 2 0.0066956 6253 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.401 77.475 141950000 35779000 38780000 27612000 0 0 0 4635400 4671300 4793500 0 0 0 4697500 4121900 5691300 0 0 0 3768400 3503000 3893900 0 0 0 9163 1336 8933 170509;170510;170511;170512;170513;170514;170515;170516;170517;170518;170519;170520 104982;104983;104984 104982 2 IAFGCDHVGFILK Unmodified 1475.7595 0.75950572 1469 P37351 rpiB Ribose-5-phosphate isomerase B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 38.941 37.247 3 0.051744 18091 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 37.793 31.711 117580000 10099000 6630200 10157000 0 0 0 12879000 11100000 17189000 0 0 0 0 8528100 8337300 0 0 0 12887000 9827400 9946500 0 0 0 9164 1469 8934 170521;170522;170523;170524;170525;170526;170527;170528;170529;170530;170531 104985 104985 1 IAFLEEPCK Unmodified 1105.5478 0.54778161 1330 P29208 menC o-succinylbenzoate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 31.162 29.991 2 0.0004874 14086 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.62 94.657 196830000 19104000 17665000 14809000 0 0 0 0 0 0 0 0 0 23573000 26789000 24242000 0 0 0 0 36758000 33891000 0 0 0 9165 1330 8935 170532;170533;170534;170535;170536;170537;170538;170539;170540 104986;104987;104988;104989;104990;104991;104992;104993 104987 7 IAFLGPK Unmodified 744.45341 0.45341094 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.273 26.184 2 0.016802 11392 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 80.377 23.867 1068800000 284600000 251610000 249120000 0 3611500 1417300 0 0 27895000 0 0 0 41116000 39971000 36650000 0 0 0 40762000 47068000 44955000 0 0 0 9166 529 8936 170541;170542;170543;170544;170545;170546;170547;170548;170549;170550;170551;170552 104994;104995;104996;104997;104998;104999;105000;105001;105002;105003 105002 10 IAFVDDNILSVFHK Unmodified 1616.8562 0.85624288 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 1 2 1 2 2 51.084 49.828 2;3 1.4114E-08 24067 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 127.76 123.59 297250000 7358900 6590700 7559100 0 0 0 33232000 31362000 27152000 0 0 0 22987000 21570000 21931000 0 0 0 37080000 40667000 39763000 0 0 0 9167 193 8937 170553;170554;170555;170556;170557;170558;170559;170560;170561;170562;170563;170564;170565;170566;170567;170568;170569 105004;105005;105006;105007;105008;105009;105010;105011;105012;105013;105014;105015;105016 105009 13 IAFVNKMDR Unmodified 1092.575 0.57499942 264 P0A6M8 fusA Elongation factor G yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.015 17.576 3 0.1537 5064 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 18.44 6.3927 494860000 27220000 30004000 34216000 16842000 11772000 12070000 33748000 38162000 35009000 3310800 2653700 1833300 20346000 19494000 22247000 0 0 0 36453000 31671000 34055000 28671000 28302000 26776000 9168 264 8938 170570;170571;170572;170573;170574;170575;170576;170577;170578;170579;170580;170581;170582;170583;170584;170585;170586;170587;170588;170589;170590 105017;105018 105017 2 IAGDYIAK Unmodified 849.45962 0.45961853 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.869 16.685 2 0.0023006 5713 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.64 50.607 5237500000 469910000 506940000 444250000 0 0 0 446520000 488340000 410050000 0 0 0 442950000 425960000 425830000 0 0 0 374100000 369860000 432820000 0 0 0 9169 72 8939 170591;170592;170593;170594;170595;170596;170597;170598;170599;170600;170601;170602 105019;105020;105021;105022;105023;105024;105025;105026;105027;105028;105029 105023 11 IAGHHSQEIDAILGYEYGPVAVHR Unmodified 2631.3194 0.31938366 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 2 2 3 3 2 2 2 34.166 32.732 3;4;5 5.5768E-10 15039 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.63 111.59 724880000 112970000 96486000 96531000 0 0 0 82222000 43666000 35642000 0 0 0 37729000 58317000 61564000 0 0 0 32417000 38275000 29067000 0 0 0 9170 328 8940 170603;170604;170605;170606;170607;170608;170609;170610;170611;170612;170613;170614;170615;170616;170617;170618;170619;170620;170621;170622;170623;170624;170625;170626;170627;170628;170629;170630;170631;170632 105030;105031;105032;105033;105034;105035;105036;105037;105038;105039;105040;105041;105042;105043;105044;105045;105046;105047;105048 105045 19 IAGINIPDHK Unmodified 1076.5978 0.59784335 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 22.035 21.821 2;3 1.6026E-06 9284 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.15 130.8 7591400000 1255800000 1149400000 891710000 26097000 23095000 22179000 384990000 339210000 351120000 83276000 65900000 75503000 110070000 377920000 407720000 0 0 0 693430000 668200000 579990000 37710000 25807000 22218000 9171 368 8941 170633;170634;170635;170636;170637;170638;170639;170640;170641;170642;170643;170644;170645;170646;170647;170648;170649;170650;170651;170652;170653;170654;170655;170656;170657;170658;170659;170660;170661;170662;170663;170664;170665;170666;170667;170668;170669;170670;170671;170672;170673 105049;105050;105051;105052;105053;105054;105055;105056;105057;105058;105059;105060;105061;105062;105063;105064;105065;105066;105067;105068;105069;105070;105071;105072;105073;105074;105075;105076;105077;105078;105079;105080;105081;105082;105083;105084;105085 105055 34 IAGIQAAK Unmodified 770.46504 0.46503826 307 P0A738 moaC Cyclic pyranopterin monophosphate synthase accessory protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 2 1 2 1 13.272 14.138 1;2 0.030035 4463 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.284 31.68 150860000 8932200 12329000 11343000 0 0 0 4324700 0 16842000 0 0 0 15831000 16795000 17115000 0 0 0 16059000 16215000 15074000 0 0 0 9172 307 8942 170674;170675;170676;170677;170678;170679;170680;170681;170682;170683;170684;170685;170686;170687;170688 105086;105087;105088;105089;105090;105091;105092;105093;105094 105090 4 IAGLDVGADDYLVKPFALEELHAR Unmodified 2611.3646 0.36460252 1347 P30843 basR Transcriptional regulatory protein BasR yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.241 48.852 4 0.0014572 24038 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.991 60.985 86528000 19821000 18504000 10952000 1698000 1867900 3253000 0 0 0 4027800 3305800 7319100 4039100 5242900 0 0 0 0 0 0 6497700 0 0 0 9173 1347 8943 170689;170690;170691;170692;170693;170694;170695;170696;170697;170698;170699;170700 105095 105095 1 IAGLEVK Unmodified 728.44324 0.44324019 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 2 3 3 3 1 2 3 2 2 2 2 2 2 3 3 3 2 2 2 19.801 20.079 1;2 0.0086175 6086 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 88.643 11.147 14976000000 1069000000 1026100000 846570000 73446000 69433000 78476000 1302100000 1464400000 1513500000 213390000 20631000 173450000 1035700000 933700000 722400000 33269000 25660000 29399000 1327800000 1516800000 1321500000 62147000 61623000 55579000 9174 293 8944 170701;170702;170703;170704;170705;170706;170707;170708;170709;170710;170711;170712;170713;170714;170715;170716;170717;170718;170719;170720;170721;170722;170723;170724;170725;170726;170727;170728;170729;170730;170731;170732;170733;170734;170735;170736;170737;170738;170739;170740;170741;170742;170743;170744;170745;170746;170747;170748;170749;170750;170751;170752;170753;170754;170755;170756 105096;105097;105098;105099;105100;105101;105102;105103;105104;105105;105106;105107;105108;105109;105110;105111;105112;105113;105114;105115;105116;105117;105118;105119 105105 24 IAGLEVKR Unmodified 884.54435 0.54435122 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.614 14.952 2 0.00095209 3457 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 124.34 61.626 212260000 0 0 0 15324000 17091000 14248000 0 0 0 31443000 36538000 36234000 0 0 0 13726000 2498000 2535100 0 0 0 17606000 12455000 12562000 9175 293 8945 170757;170758;170759;170760;170761;170762;170763;170764;170765;170766;170767;170768 105120;105121;105122;105123;105124;105125;105126 105124 7 IAGLPAPEVFVTAER Unmodified 1568.8562 0.85624288 1922 P77625 yfbT Sugar phosphatase YfbT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.434 46.044 2 4.821E-06 22942 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 104.32 100.56 280380000 26885000 23025000 24550000 0 0 0 32820000 24815000 27473000 0 0 0 20378000 18134000 16212000 0 0 0 24573000 21391000 20125000 0 0 0 9176 1922 8946 170769;170770;170771;170772;170773;170774;170775;170776;170777;170778;170779;170780 105127;105128;105129;105130;105131;105132;105133;105134;105135;105136;105137 105127 10 IAGLSFR Unmodified 762.43882 0.43882351 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 2 2 25.082 24.501 2 4.3391E-05 12169 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 178.02 119.36 944520000 83029000 80694000 76807000 1185500 1146800 1068100 83140000 84289000 72137000 2849000 2422000 2823700 58949000 57217000 48127000 19844000 17603000 20595000 71761000 81387000 77447000 0 0 0 9177 37 8947 170781;170782;170783;170784;170785;170786;170787;170788;170789;170790;170791;170792;170793;170794;170795;170796;170797;170798;170799;170800;170801;170802;170803;170804;170805;170806;170807;170808;170809;170810;170811;170812 105138;105139;105140;105141;105142;105143;105144;105145;105146;105147;105148;105149;105150;105151;105152;105153;105154;105155;105156;105157 105153 20 IAGSDIMMSDAMPSGK Unmodified 1609.715 0.71499965 1123 P16681 phnB Protein PhnB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.732 33.162 2 0.00010814 15933 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.26 102.76 180250000 50837000 48563000 46425000 1911400 1958600 2611600 8555100 10939000 8451700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9178 1123 8948 170813;170814;170815;170816;170817;170818;170819;170820;170821 105158;105159;105160 105158 3 IAGVTDVR Unmodified 829.46577 0.46576654 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 16.207 16.768 2 0.0050114 5811 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.323 63.466 85003000 21171000 17487000 0 0 0 0 0 18028000 14279000 1036100 0 0 0 0 0 0 0 0 13002000 0 0 0 0 0 9179 162 8949 170822;170823;170824;170825;170826;170827 105161;105162;105163;105164 105164 4 IAHDISSYSFVAMAK Unmodified 1638.8076 0.80757813 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 34.231 32.727 2;3 7.7582E-12 15624 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 174.42 160.73 5729700000 454530000 455470000 405590000 4762600 6126800 5380800 473870000 492480000 479980000 3174000 4028600 2926000 459970000 410550000 409440000 4543300 2082400 0 545310000 590350000 508550000 3253000 3528900 3792600 9180 869 8950 170828;170829;170830;170831;170832;170833;170834;170835;170836;170837;170838;170839;170840;170841;170842;170843;170844;170845;170846;170847;170848;170849;170850;170851;170852;170853;170854;170855;170856;170857;170858;170859;170860;170861;170862 105165;105166;105167;105168;105169;105170;105171;105172;105173;105174;105175;105176;105177;105178;105179;105180;105181;105182;105183 105174 19 IAHELMADLEK Unmodified 1268.6435 0.64347291 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 25.095 23.946 2;3 3.3829E-11 10464 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 201.33 200.93 1928800000 157700000 182680000 134910000 0 0 0 99682000 161020000 145850000 10946000 10129000 10059000 100810000 180170000 87467000 0 0 0 230560000 206500000 208070000 0 2256300 0 9181 882 8951 170863;170864;170865;170866;170867;170868;170869;170870;170871;170872;170873;170874;170875;170876;170877;170878;170879;170880;170881;170882;170883;170884;170885;170886;170887;170888;170889;170890;170891;170892 105184;105185;105186;105187;105188;105189;105190;105191;105192;105193;105194;105195;105196;105197;105198;105199;105200;105201;105202;105203;105204;105205;105206;105207 105201 24 IAHELMADLEKETVDFVDNYDGTEK Unmodified 2881.3328 0.33276963 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.214 50.919 3 2.4389E-22 24789 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 171.52 171.4 220550000 14215000 11695000 12792000 0 0 0 14891000 15845000 16257000 3811400 5239600 0 15313000 15497000 20744000 0 0 0 27230000 23644000 23380000 0 0 0 9182 882 8952 170893;170894;170895;170896;170897;170898;170899;170900;170901;170902;170903;170904;170905;170906 105208;105209;105210;105211;105212;105213 105209 6 IAHELMADLEKETVDFVDNYDGTEKIPDVMPTK Unmodified 3762.8008 0.80084436 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.179 51.943 4 1.5658E-18 20898 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 144.55 142.98 81021000 0 0 0 0 2509700 1591900 0 0 0 19666000 16252000 12158000 0 0 0 0 0 7334100 0 0 0 6950900 8056600 6502100 9183 882 8953 170907;170908;170909;170910;170911;170912;170913;170914;170915 105214;105215;105216 105215 3 IAHGVPVGGELEMVDGTTLSHSLAGR Unmodified 2602.3173 0.31733475 344 P0A7H6 recR Recombination protein RecR yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 2 1 1 1 1 1 1 38.272 36.619 3;4 5.0023E-16 16973 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 152.48 146.13 392150000 37804000 37456000 43643000 0 0 0 30117000 30121000 23000000 0 0 0 29396000 30831000 21545000 0 0 0 32722000 37472000 36227000 0 990870 822270 9184 344 8954 170916;170917;170918;170919;170920;170921;170922;170923;170924;170925;170926;170927;170928;170929;170930;170931;170932;170933 105217;105218;105219;105220;105221;105222;105223;105224;105225 105223 8 IAHWVGQGATISDR Unmodified 1509.7688 0.76882486 369 P0A7T3 rpsP 30S ribosomal protein S16 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 20.845 21.028 2;3 1.7795E-14 8457 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 223.96 217.07 9530000000 1277200000 1304400000 1314100000 28742000 38679000 41463000 379490000 374630000 439330000 48555000 70740000 64233000 546030000 445990000 442000000 51274000 46790000 44883000 742390000 832400000 752900000 74612000 85644000 83567000 9185 369 8955 170934;170935;170936;170937;170938;170939;170940;170941;170942;170943;170944;170945;170946;170947;170948;170949;170950;170951;170952;170953;170954;170955;170956;170957;170958;170959;170960;170961;170962;170963;170964;170965;170966;170967;170968;170969;170970;170971;170972;170973;170974;170975;170976 105226;105227;105228;105229;105230;105231;105232;105233;105234;105235;105236;105237;105238;105239;105240;105241;105242;105243;105244;105245;105246;105247;105248;105249;105250;105251;105252;105253;105254;105255;105256;105257;105258;105259;105260;105261;105262;105263 105244 38 IAIAACEQCGR Unmodified 1247.5751 0.57507577 1029 P0AGL7 rsmE Ribosomal RNA small subunit methyltransferase E yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 16.984 17.717 2 0.00020742 6601 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.55 95.326 65254000 5476000 6488400 4929600 0 0 0 8905600 7424200 6160600 0 0 0 0 2994200 4314900 0 0 0 4640500 7494500 6425800 0 0 0 9186 1029 8956 170977;170978;170979;170980;170981;170982;170983;170984;170985;170986;170987 105264;105265;105266;105267;105268;105269 105264 6 IAIAAGIDDPQNPIGTDAVK Unmodified 1978.0371 0.037120373 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 2 40.262 38.486 2;3 4.5644E-23 19010 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 236.92 226.31 1341600000 50234000 44779000 43253000 2023000 2678400 2089000 147190000 141640000 138040000 7551200 7618300 8393400 116900000 132890000 120420000 0 0 0 119900000 124640000 121380000 0 3465800 6534900 9187 1468 8957 170988;170989;170990;170991;170992;170993;170994;170995;170996;170997;170998;170999;171000;171001;171002;171003;171004;171005;171006;171007;171008;171009;171010;171011;171012;171013;171014;171015;171016;171017;171018;171019;171020;171021;171022;171023 105270;105271;105272;105273;105274;105275;105276;105277;105278;105279;105280;105281;105282;105283;105284;105285;105286;105287;105288;105289;105290 105275 20 IAIAEGQVK Unmodified 927.53893 0.53893149 610 P0AAS7 ybcJ Uncharacterized protein YbcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.273 17.955 2 0.0012119 6545 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.308 74.81 110610000 23456000 24660000 23920000 0 0 0 6271700 7199400 6792900 0 0 0 2030400 2659200 2255900 0 0 0 3901600 3395400 4064000 0 0 0 9188 610 8958 171024;171025;171026;171027;171028;171029;171030;171031;171032;171033;171034;171035 105291;105292;105293;105294;105295;105296 105294 6 IAIAVAGFAESELEITAQDNLLVVK Unmodified 2613.4265 0.42653408 1033 P0C054 ibpA Small heat shock protein IbpA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 55.467 53.995 3 0.068018 21959 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 33.703 30.77 25136000 2901700 0 0 0 1750600 1528300 0 0 0 5637300 4674800 5770300 0 0 0 0 0 0 2873200 0 0 0 0 0 9189 1033 8959 171036;171037;171038;171039;171040;171041;171042 105297 105297 1 IAIAVASMWK Unmodified 1088.6052 0.60523691 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.295 40.596 2 0.0012791 19101 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 85.676 78.94 186550000 11133000 14220000 10505000 0 0 0 21505000 16994000 17412000 0 0 0 16534000 13607000 11311000 0 0 0 17007000 17499000 18829000 0 0 0 9190 1900 8960 171043;171044;171045;171046;171047;171048;171049;171050;171051;171052;171053;171054 105298;105299;105300;105301;105302;105303 105301 3 IAIDDFGTGYANYER Unmodified 1703.7791 0.77911477 1216 P23842 yfeA Uncharacterized protein YfeA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 32.564 31.262 2 0.027473 14748 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 43.512 43.512 63946000 8190300 9409200 7185700 0 0 0 0 3068300 2479900 0 0 0 3855000 3572600 3813900 0 0 0 6272400 6709100 9390100 0 0 0 9191 1216 8961 171055;171056;171057;171058;171059;171060;171061;171062;171063;171064;171065 105304;105305 105304 2 IAIDILK Unmodified 784.50584 0.50584045 425 P0A8F4 udk Uridine kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.592 34.059 2 0.012974 13275 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 84.244 46.598 85941000 0 0 0 2400900 0 1968000 0 0 0 6326200 5022400 7551200 0 0 0 4575000 2996900 2920000 0 0 38661000 4601800 3809400 5108100 9192 425 8962 171066;171067;171068;171069;171070;171071;171072;171073;171074;171075;171076;171077 105306;105307;105308;105309;105310;105311;105312;105313;105314;105315;105316 105311 11 IAIDWPQTSGLILSPK Unmodified 1737.9665 0.96652161 1490 P37745 rfbC dTDP-4-dehydrorhamnose 3,5-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.459 51.211 2 3.2407E-08 25179 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.87 114.11 780780000 38708000 37825000 36875000 0 0 0 59093000 52338000 53199000 0 0 0 59661000 61774000 59862000 0 0 0 107930000 107090000 106430000 0 0 0 9193 1490 8963 171078;171079;171080;171081;171082;171083;171084;171085;171086;171087;171088;171089 105317;105318;105319;105320;105321;105322;105323 105318 7 IAIEQAR Unmodified 799.4552 0.45520186 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.321 14.734 2 0.001881 4571 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.15 56.257 1328900000 164470000 159100000 140780000 0 0 0 222680000 239470000 256620000 6721000 6655400 6338300 0 0 0 5869400 1005600 1267600 104370000 7093300 0 1952700 1579900 2881300 9194 1662 8964 171090;171091;171092;171093;171094;171095;171096;171097;171098;171099;171100;171101;171102;171103;171104;171105;171106 105324;105325;105326;105327;105328;105329 105326 6 IAIFGVVMR Unmodified 1004.5841 0.58410754 933 P0AFF0 nuoN NADH-quinone oxidoreductase subunit N yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 48.218 46.805 2 0.00010977 22730 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.44 131.05 35105000 0 0 0 0 0 0 5479300 3953000 4266200 0 0 0 4649000 0 4143400 0 0 0 4015800 4364500 4234400 0 0 0 9195 933 8965 171107;171108;171109;171110;171111;171112;171113;171114 105330;105331;105332;105333;105334;105335 105333 6 IAIHLNDTHPVLSIPEMMR Unmodified 2186.134 0.13401442 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 42.484 40.786 3;4 7.2684E-07 20005 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.904 93.146 652600000 61613000 68860000 58740000 0 0 0 69174000 78743000 69767000 0 0 0 42320000 46229000 40108000 0 0 0 36665000 40046000 40331000 0 0 0 9196 709 8966 171115;171116;171117;171118;171119;171120;171121;171122;171123;171124;171125;171126;171127;171128;171129;171130;171131;171132;171133;171134;171135;171136;171137;171138 105336;105337;105338;105339;105340;105341;105342 105337 7 IAILTVSNR Unmodified 985.59203 0.59202969 900 P0AEZ9 moaB Molybdenum cofactor biosynthesis protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.087 27.024 2 0.00027013 12838 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.46 84.062 189710000 24382000 24587000 20471000 1610800 2084100 1351600 19276000 16968000 16299000 0 0 0 5442400 5935600 5034900 11085000 7777500 8932200 3686800 6866000 7924400 0 0 0 9197 900 8967 171139;171140;171141;171142;171143;171144;171145;171146;171147;171148;171149;171150;171151;171152;171153;171154;171155;171156 105343;105344;105345;105346;105347;105348;105349;105350 105343 4 IAISERPALNS Unmodified 1169.6404 0.64043645 1034 P0C058 ibpB Small heat shock protein IbpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 23.99 23.066 2 0.00054024 7383 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 107.57 99.929 32980000 0 0 0 2571800 2379600 2754300 0 0 0 0 5927200 4291200 0 0 2144600 0 0 1314700 2146900 0 0 3171900 2803400 3474700 9198 1034 8968 171157;171158;171159;171160;171161;171162;171163;171164;171165;171166;171167 105351;105352;105353;105354;105355;105356 105355 6 IAIVNMGSLFQQVAQK Unmodified 1745.9498 0.94982569 888 P0AEU7 skp Chaperone protein Skp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 3 2 3 2 2 2 52.605 51.424 2;3 4.3096E-31 23983 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 242.97 223.51 9151500000 768930000 782840000 789780000 13392000 13774000 12962000 702400000 690110000 623750000 151920000 134440000 102900000 699420000 623480000 684290000 74860000 73135000 89292000 704700000 634650000 598100000 64406000 67537000 50437000 9199 888 8969 171168;171169;171170;171171;171172;171173;171174;171175;171176;171177;171178;171179;171180;171181;171182;171183;171184;171185;171186;171187;171188;171189;171190;171191;171192;171193;171194;171195;171196;171197;171198;171199;171200;171201;171202;171203;171204;171205;171206;171207;171208;171209;171210;171211;171212;171213;171214;171215;171216;171217;171218;171219;171220 105357;105358;105359;105360;105361;105362;105363;105364;105365;105366;105367;105368;105369;105370;105371;105372;105373;105374;105375;105376;105377;105378;105379;105380;105381;105382;105383;105384;105385;105386;105387;105388;105389;105390;105391;105392;105393;105394;105395;105396;105397 105396 39 IAKDPEFQNIMK Unmodified 1432.7384 0.73843593 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 24.235 23.366 2 0.0058811 10082 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 65.535 60.923 53230000 5803100 7010400 5206600 0 0 0 4463000 4841200 0 0 0 0 2880600 4096000 3325100 0 0 0 4939600 4271800 6392800 0 0 0 9200 1221 8970 171221;171222;171223;171224;171225;171226;171227;171228;171229;171230;171231 105398 105398 0 IAKEEMATEMER Unmodified 1436.664 0.66395036 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 14.72 15.377 2;3 4.772E-06 5068 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 164.65 148.99 697880000 78590000 74048000 65404000 8192000 9038800 9296800 47713000 59139000 47984000 3012700 2439800 2224400 34660000 38982000 35425000 2112900 2158300 1515800 62188000 50975000 52391000 0 5813300 4580600 9201 228 8971 171232;171233;171234;171235;171236;171237;171238;171239;171240;171241;171242;171243;171244;171245;171246;171247;171248;171249;171250;171251;171252;171253;171254;171255;171256;171257;171258;171259;171260;171261;171262;171263;171264;171265;171266;171267;171268;171269 105399;105400;105401;105402;105403;105404;105405;105406;105407;105408;105409;105410;105411;105412;105413;105414;105415;105416 105404 18 IALASPDMIR Oxidation (M) 1101.5852 0.58522975 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 2 7 8 8 2 9 9 8 8 7 7 29.214 27.979 2 3.6445E-05 10692 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 145.65 124.99 2810600000 14335000 13363000 11933000 827280 845990 926570 8698100 4276900 10807000 278570000 248220000 216680000 0 0 7406700 485940000 310090000 331950000 0 0 0 275170000 282820000 307800000 9202 458 8972 171270;171271;171272;171273;171274;171275;171276;171277;171278;171279;171280;171281;171282;171283;171284;171285;171286;171287;171288;171289;171290;171291;171292;171293;171294;171295;171296;171297;171298;171299;171300;171301;171302;171303;171304;171305;171306;171307;171308;171309;171310;171311;171312;171313;171314;171315;171316;171317;171318;171319;171320;171321;171322;171323;171324;171325;171326;171327;171328;171329;171330;171331;171332;171333;171334;171335;171336;171337;171338;171339;171340;171341;171342;171343;171344;171345;171346;171347;171348;171349;171350;171351;171352;171353;171354;171355 105417;105418;105419;105420;105421;105422;105423;105424;105425;105426;105427;105428;105429;105430;105431;105432;105433;105434;105435;105436;105437;105438;105439;105440;105441;105442;105443;105444;105445;105446;105447;105448;105449;105450;105451;105452;105453;105454;105455;105456;105457;105458;105459;105460;105461;105462;105463;105464;105465;105466;105467;105468;105469;105470;105471;105472;105473;105474;105475;105476;105477;105478;105479;105480;105481;105482;105483;105484;105485;105486;105487;105488;105489;105490;105491;105492;105493 105447 232 74 IALASPDMIR Unmodified 1085.5903 0.59031513 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 33.333 31.787 2;3 3.6285E-12 15399 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 205.7 192.05 47416000000 516050000 0 396330000 0 0 0 373960000 357110000 394180000 2718100000 2868600000 3213700000 330220000 360180000 302010000 10079000000 7773500000 7843800000 505310000 554160000 518760000 4161100000 4136800000 12498000 9203 458 8972 171356;171357;171358;171359;171360;171361;171362;171363;171364;171365;171366;171367;171368;171369;171370;171371;171372;171373;171374;171375;171376;171377;171378;171379;171380;171381;171382;171383;171384;171385;171386;171387 105494;105495;105496;105497;105498;105499;105500;105501;105502;105503;105504;105505;105506;105507;105508;105509;105510;105511;105512;105513;105514;105515;105516;105517;105518;105519;105520;105521;105522;105523;105524;105525;105526;105527;105528;105529;105530;105531;105532;105533 105512 40 IALESVLLGDKE Unmodified 1285.7129 0.71293269 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 45.604 44.2 2 3.9374E-18 21294 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 185.29 166.86 3086900000 0 0 2246300 0 2028900 1661800 1185200000 1154800000 0 2981600 4185700 0 0 0 1366100 1264800 1229400 0 0 729860000 0 0 0 0 9204 669 8973 171388;171389;171390;171391;171392;171393;171394;171395;171396;171397;171398;171399;171400;171401;171402;171403;171404;171405;171406;171407 105534;105535;105536;105537;105538;105539;105540;105541;105542;105543;105544;105545 105539 12 IALFCNVPEK Unmodified 1189.6165 0.61652988 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 33.729 32.116 2 0.00035009 15630 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 108.81 99.22 2144300000 133500000 109950000 94447000 907020 1710200 1842100 190990000 179540000 199650000 0 4372600 3089700 162780000 155950000 146250000 0 0 0 241880000 251410000 258890000 1993800 2592700 2575100 9205 337 8974 171408;171409;171410;171411;171412;171413;171414;171415;171416;171417;171418;171419;171420;171421;171422;171423;171424;171425;171426;171427;171428 105546;105547;105548;105549;105550;105551;105552;105553;105554;105555;105556;105557 105546 12 IALGHHR Unmodified 802.4562 0.45620491 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 9.6539 10.559 2 0.0059186 2108 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 97.64 53.029 58879000 0 0 0 0 0 0 0 0 0 0 0 0 8920300 9650300 7357500 0 0 0 11272000 9745700 11932000 0 0 0 9206 1812 8975 171429;171430;171431;171432;171433;171434 105558;105559;105560;105561;105562;105563 105562 6 IALGVFDSGR Unmodified 1033.5556 0.55564418 1798 P75959 nagK N-acetyl-D-glucosamine kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 36.528 34.98 2 2.481E-05 16787 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.36 94.726 175200000 17175000 15926000 15079000 0 0 0 16042000 13722000 13569000 0 0 0 14350000 14463000 12724000 0 0 0 0 21537000 20614000 0 0 0 9207 1798 8976 171435;171436;171437;171438;171439;171440;171441;171442;171443;171444;171445 105564;105565 105565 2 IALIGPNGCGK Unmodified 1098.5856 0.5855641 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 24.437 23.387 2 0.0026107 10337 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 69.423 49.285 8642300 0 0 0 0 405450 657440 0 0 0 0 590170 791630 1964200 0 0 0 0 0 4233400 0 0 0 0 0 9208 1564 8977 171446;171447;171448;171449;171450;171451 105566 105566 1 IALKSEVAVPGIDASTFDGIIQK Unmodified 2371.2999 0.299877 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 48.116 46.631 3 0.00043396 22746 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 65.901 65.847 128790000 39694000 42836000 35976000 0 0 0 5858400 0 4429900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9209 1038 8978 171452;171453;171454;171455;171456 105567;105568;105569 105568 3 IALLEQTLNVVLLHR Unmodified 1731.0407 0.040689608 1842 P76250 dmlR HTH-type transcriptional regulator DmlR yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.108 52.302 3 0.00011865 19348 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 77.078 74.953 33727000 0 0 0 0 0 0 0 0 1654300 0 0 0 0 0 0 5538800 12170000 8017400 3217500 1960300 1168100 0 0 0 9210 1842 8979 171457;171458;171459;171460;171461;171462;171463 105570 105570 1 IALQILHTGR Unmodified 1120.6717 0.671677 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 26.261 25.268 2;3 0.15215 11373 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 30.824 27.885 162370000 52036000 46464000 44766000 0 0 0 2773800 0 0 0 0 0 0 0 2116100 0 0 0 5032000 4517900 4666600 0 0 0 9211 1554 8980 171464;171465;171466;171467;171468;171469;171470;171471;171472;171473;171474 105571;105572 105571 0 IALSQASVLISGESGTGK Unmodified 1716.9258 0.92577901 1949 Q06065 atoC Acetoacetate metabolism regulatory protein AtoC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 38.962 37.388 2 1.3948E-09 18237 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 124.51 110.72 18192000 7089700 4385500 3832400 0 0 0 0 0 1331300 0 0 0 0 1552800 0 0 0 0 0 0 0 0 0 0 9212 1949 8981 171475;171476;171477;171478;171479 105573 105573 1 IALSSVAETR Unmodified 1045.5768 0.57677356 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 23.029 22.302 2 2.4487E-05 7043 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 147.51 101.08 188360000 0 0 0 0 0 0 0 0 0 5655600 6749900 7518000 0 0 0 30875000 23723000 32864000 0 0 0 41957000 39014000 0 9213 1448 8982 171480;171481;171482;171483;171484;171485;171486;171487 105574;105575;105576 105574 3 IALTATPALHTVQIFGEPVYR Unmodified 2296.258 0.25795261 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 47.748 46.308 3 2.9905E-28 22376 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 195.78 183.83 198420000 0 0 0 0 0 0 19931000 20792000 20543000 0 0 0 25314000 21289000 19336000 0 0 0 21038000 22458000 27722000 0 0 0 9214 193 8983 171488;171489;171490;171491;171492;171493;171494;171495;171496 105577;105578;105579;105580;105581;105582 105579 6 IALTQSGGLDAAQAR Unmodified 1470.7791 0.77905519 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.328 25.068 2 1.7687E-15 11557 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 230.41 223.03 313380000 24349000 25649000 23116000 792490 888240 899670 30331000 32285000 26437000 2143300 0 1263300 18314000 22557000 20146000 0 0 0 30292000 26866000 24415000 875460 682550 1084300 9215 1482 8984 171497;171498;171499;171500;171501;171502;171503;171504;171505;171506;171507;171508;171509;171510;171511;171512;171513;171514;171515;171516 105583;105584;105585;105586;105587;105588;105589;105590;105591;105592;105593;105594 105584 12 IALVTDGR Unmodified 843.48142 0.48141661 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.408 20.639 2 0.00075373 8081 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.59 83.908 746210000 11531000 15652000 10850000 0 0 0 89267000 84868000 89027000 0 1564500 1193500 77645000 62961000 68473000 0 0 1541000 83746000 73959000 73934000 0 0 0 9216 785 8985 171517;171518;171519;171520;171521;171522;171523;171524;171525;171526;171527;171528;171529;171530;171531 105595;105596;105597;105598;105599;105600;105601 105598 7 IALVTGASR Unmodified 886.52362 0.52361577 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.541 19.821 2 1.7728E-05 7812 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 157.33 108.57 8480000000 533170000 437810000 419800000 8690300 8601400 8606100 546230000 511360000 559800000 7106500 5100700 5454600 946330000 923130000 706250000 4134000 3023200 2948800 985110000 863660000 978610000 4701900 5251300 5091600 9217 868 8986 171532;171533;171534;171535;171536;171537;171538;171539;171540;171541;171542;171543;171544;171545;171546;171547;171548;171549;171550;171551;171552;171553;171554;171555 105602;105603;105604;105605;105606;105607;105608;105609;105610;105611;105612;105613;105614;105615;105616;105617 105604 16 IALYELSK Unmodified 935.53278 0.53278348 316 P0A780 nusB N utilization substance protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.707 29.225 2 0.00081197 14090 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.13 117.45 1122800000 95351000 86712000 93843000 4224700 4001700 3971400 99815000 94101000 104680000 0 0 13357000 76500000 76120000 62954000 0 0 0 92522000 108580000 94537000 6928400 0 4569600 9218 316 8987 171556;171557;171558;171559;171560;171561;171562;171563;171564;171565;171566;171567;171568;171569;171570;171571;171572;171573 105618;105619;105620;105621;105622;105623;105624;105625;105626;105627;105628;105629;105630 105618 13 IAMASEEDAGDSDNR Unmodified 1579.642 0.64202894 1418 P33235 flgK Flagellar hook-associated protein 1 yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 15.226 16.014 2 1.1239E-05 5479 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.403 89.403 10634000 3112900 3642700 3730500 0 147690 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9219 1418 8988 171574;171575;171576;171577 105631 105631 0 IAMIFQEPMVSLNPLHTLEK Unmodified 2310.2116 0.21159604 1432 P33916 yejF Uncharacterized ABC transporter ATP-binding protein YejF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.795 39.023 3 0.17238 18957 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 8.3901 4.5864 713420000 0 0 73614000 0 0 0 102160000 74009000 95400000 0 0 0 70592000 74603000 0 0 0 0 115210000 107830000 0 0 0 0 9220 1432 8989 171578;171579;171580;171581;171582;171583;171584;171585 105632;105633;105634;105635 105632 4 IAMVQLSPAALGNDMAAIELR Oxidation (M) 2199.1392 0.13915938 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 1 0 By matching By MS/MS By matching 1 1 1 45.16 44.711 2 0.011754 16792 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 48.568 27.711 584010000 0 0 0 0 0 1437800 0 0 0 0 0 0 0 0 0 558550000 24023000 0 0 0 0 0 0 0 9221 127 8990 171586;171587;171588 105636;105637 105636 37 2 IANAGIR Unmodified 713.41842 0.41842242 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 12.769 13.493 2 0.00056307 3368 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.82 101.97 1832100000 133840000 160940000 119940000 1793500 1780300 2371000 188050000 146720000 151610000 0 0 0 146990000 152150000 121830000 25807000 18100000 20823000 142360000 152330000 144690000 0 0 0 9222 715 8991 171589;171590;171591;171592;171593;171594;171595;171596;171597;171598;171599;171600;171601;171602;171603;171604;171605;171606;171607;171608 105638;105639;105640;105641;105642;105643 105641 6 IANASALLMQLESPLESVMAAAK Unmodified 2357.2335 0.23345369 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 55.741 54.32 3 0.00014481 25728 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 76.01 68.403 146800000 0 0 0 0 0 0 0 0 0 0 0 0 33119000 32853000 27119000 0 0 0 26702000 0 27002000 0 0 0 9223 528 8992 171609;171610;171611;171612;171613 105644 105644 1 IANELLSR Unmodified 914.51853 0.5185304 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 3 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 22.561 22.282 2 1.2151E-06 8880 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 194.44 114.99 1132900000 84669000 81618000 76629000 3969400 3900400 4726200 164750000 192590000 193000000 22588000 16989000 12857000 43074000 36143000 42723000 1809400 1260800 1502800 49381000 47134000 44640000 2761900 1946300 2278300 9224 522 8993 171614;171615;171616;171617;171618;171619;171620;171621;171622;171623;171624;171625;171626;171627;171628;171629;171630;171631;171632;171633;171634;171635;171636;171637;171638;171639;171640;171641;171642;171643;171644;171645;171646;171647;171648;171649;171650 105645;105646;105647;105648;105649;105650;105651;105652;105653;105654;105655;105656;105657;105658;105659;105660;105661;105662;105663;105664;105665;105666;105667 105653 22 IANLSGGER Unmodified 915.47739 0.47739386 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.892 13.523 2 0.00034988 3754 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 113.5 81.439 1309000000 174850000 160330000 174450000 5279900 6425400 5586200 142220000 140530000 131240000 0 5325900 6294100 116860000 109630000 106880000 2313000 0 2151800 0 0 0 6859100 5935200 5805000 9225 561 8994 171651;171652;171653;171654;171655;171656;171657;171658;171659;171660;171661;171662;171663;171664;171665;171666;171667;171668;171669;171670 105668;105669;105670;105671;105672;105673;105674;105675;105676;105677;105678;105679 105679 4 IANRELEANGK Unmodified 1213.6415 0.64149908 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 11.577 11.754 2;3 2.156E-34 2471 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 332.17 211.87 2095700000 0 0 0 0 0 0 0 2391900 0 79298000 58296000 59436000 0 0 0 467180000 456320000 424030000 0 0 0 203180000 177450000 168070000 9226 458 8995 171671;171672;171673;171674;171675;171676;171677;171678;171679;171680;171681;171682;171683;171684;171685;171686;171687;171688;171689 105680;105681;105682;105683;105684;105685;105686;105687;105688;105689;105690;105691;105692;105693;105694;105695;105696;105697 105684 18 IANTPAFIK Unmodified 973.55967 0.55966693 493 P0A964 cheW Chemotaxis protein CheW yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.933 23.792 2 0.10235 10535 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 48.561 44.151 467870000 144930000 138600000 123440000 17283000 16224000 19828000 2283700 0 3719000 1567700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9227 493 8996 171690;171691;171692;171693;171694;171695;171696;171697;171698 105698 105698 0 IAPDLQMPFEPSHENMANLK Unmodified 2281.0871 0.087123808 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 40.613 38.945 3 8.6716E-05 18127 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.742 68.504 1085000000 125100000 111110000 105910000 0 0 1075300 91068000 94921000 90161000 0 0 0 87807000 72918000 71363000 0 0 0 87066000 79760000 66718000 0 0 0 9228 801 8997 171699;171700;171701;171702;171703;171704;171705;171706;171707;171708;171709;171710;171711 105699;105700;105701;105702;105703;105704;105705;105706;105707 105706 9 IAPDLSEEELIQVADSLVR Unmodified 2096.1001 0.10011456 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 1 2 2 1 2 2 2 2 2 2 1 2 2 55.463 54.025 2;3 1.0787E-09 19929 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 145.43 140.15 276510000 30748000 26158000 29000000 16807000 16914000 15294000 5794300 0 3327700 5353200 7020500 4760800 13082000 14138000 12588000 0 0 0 15439000 19093000 18603000 5409600 8586300 8393100 9229 335 8998 171712;171713;171714;171715;171716;171717;171718;171719;171720;171721;171722;171723;171724;171725;171726;171727;171728;171729;171730;171731;171732;171733;171734;171735;171736;171737;171738;171739;171740;171741;171742;171743;171744;171745;171746;171747;171748 105708;105709;105710;105711 105710 4 IAPELYLK Unmodified 945.55352 0.55351892 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.16 29.636 2 0.0023006 13647 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.64 41.285 8300400000 668160000 589090000 532850000 1821500 1465300 1703400 994410000 934700000 985550000 5436800 2793100 596680 562770000 546890000 589730000 1461500 0 0 617870000 651750000 606280000 1429100 1583500 2064100 9230 448;449 8999 171749;171750;171751;171752;171753;171754;171755;171756;171757;171758;171759;171760;171761;171762;171763;171764;171765;171766;171767;171768;171769;171770 105712;105713;105714;105715;105716;105717;105718;105719;105720;105721;105722;105723;105724 105720 13 IAPGLYK Unmodified 760.44833 0.44832557 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.122 17.839 2 0.025077 6476 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 72.021 37.316 878600000 87329000 79690000 71305000 340490 220030 0 94817000 96053000 96663000 0 0 0 57976000 51012000 48562000 0 0 0 64369000 63394000 66871000 0 0 0 9231 1375 9000 171771;171772;171773;171774;171775;171776;171777;171778;171779;171780;171781;171782;171783;171784 105725;105726;105727;105728;105729;105730;105731 105727 6 IAPPDEHAASAGGLAVGILGALK Unmodified 2127.1688 0.16880325 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 1 1 1 1 1 1 1 1 1 48.435 46.994 2;3;4 1.5646E-21 22829 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 205.66 195.87 1283000000 296210000 288950000 250260000 7398500 7958300 857910 98813000 77169000 82352000 4707400 7166700 8225200 16325000 17927000 20082000 0 0 0 29029000 34920000 34673000 0 0 0 9232 1376 9001 171785;171786;171787;171788;171789;171790;171791;171792;171793;171794;171795;171796;171797;171798;171799;171800;171801;171802;171803;171804;171805;171806;171807;171808;171809;171810;171811;171812;171813;171814 105732;105733;105734;105735;105736;105737;105738;105739;105740;105741;105742;105743;105744;105745;105746;105747;105748;105749;105750;105751;105752;105753 105747 22 IAPSAHK Unmodified 722.40752 0.40752338 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 5.0343 5.8875 2 0.090666 1042 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 55.604 41.191 45204000 0 0 0 0 0 0 14462000 15118000 13348000 0 0 0 0 0 0 0 0 0 1128400 0 1148000 0 0 0 9233 1887 9002 171815;171816;171817;171818;171819 105754 105754 1 IAPYPQAEK Unmodified 1015.5338 0.53384611 1212 P23827 eco Ecotin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 3 3 2 2 2 2 1 1 14.7 15.446 1;2 0.00028978 5213 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.74 103.11 3163800000 172260000 199320000 200630000 8008200 7089300 7333400 376870000 355260000 321240000 0 1120900 0 250230000 239430000 171820000 0 0 0 276540000 262870000 290690000 12397000 10674000 0 9234 1212 9003 171820;171821;171822;171823;171824;171825;171826;171827;171828;171829;171830;171831;171832;171833;171834;171835;171836;171837;171838;171839;171840;171841;171842;171843;171844;171845;171846;171847;171848;171849;171850;171851 105755;105756;105757;105758;105759;105760;105761;105762;105763;105764;105765 105760 9 IAPYYHLFGSDELSQR Unmodified 1894.9214 0.92136233 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 1 1 2 1 1 1 2 1 2 2 2 2 38.729 36.983 2;3 4.5184E-14 18251 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 229.68 197.35 2170400000 63358000 51326000 51832000 33460000 34293000 30477000 168910000 163650000 162090000 56045000 61269000 71694000 126680000 121250000 118930000 20377000 15835000 16931000 243690000 208680000 196660000 56248000 43305000 53391000 9235 1427 9004 171852;171853;171854;171855;171856;171857;171858;171859;171860;171861;171862;171863;171864;171865;171866;171867;171868;171869;171870;171871;171872;171873;171874;171875;171876;171877;171878;171879;171880;171881;171882;171883;171884;171885;171886;171887;171888;171889;171890;171891;171892 105766;105767;105768;105769;105770;105771;105772;105773;105774;105775;105776;105777;105778;105779;105780;105781;105782;105783;105784;105785;105786;105787;105788;105789;105790;105791;105792;105793;105794;105795;105796;105797;105798 105777 26 IAQAIIELNQADLDPHALAR Unmodified 2171.1699 0.16986588 1908 P77475 yqaB Fructose-1-phosphate phosphatase YqaB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.554 41.814 3 2.0505E-18 19569 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 133.16 129.83 344450000 13802000 9337800 8759800 1107600 1071200 1040700 32310000 30611000 32802000 6793400 7562400 5727600 21333000 27692000 24926000 0 0 0 36356000 37425000 38672000 2528800 2434300 2154800 9236 1908 9005 171893;171894;171895;171896;171897;171898;171899;171900;171901;171902;171903;171904;171905;171906;171907;171908;171909;171910;171911;171912;171913 105799;105800;105801;105802;105803;105804;105805;105806;105807;105808;105809 105808 11 IAQAPAFLK Unmodified 957.56475 0.56475231 1149 P18196 minC Septum site-determining protein MinC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.174 26.82 2 0.00073048 12074 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 102.71 93.5 357970000 40727000 46393000 32669000 1224400 1162600 966670 15437000 23158000 17161000 1439100 1021600 1233000 24513000 22416000 17319000 0 0 0 35984000 38246000 36902000 0 0 0 9237 1149 9006 171914;171915;171916;171917;171918;171919;171920;171921;171922;171923;171924;171925;171926;171927;171928;171929;171930;171931 105810;105811;105812;105813;105814;105815;105816;105817;105818 105818 8 IAQASQQEGR Unmodified 1086.5418 0.54178503 1785 P75867 ycbZ Putative Lon protease homolog yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 10.472 11.263 2 0.0014532 2302 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 96.331 82.425 21905000 0 0 0 0 0 0 9807800 9894800 0 0 0 0 0 0 2202100 0 0 0 0 0 0 0 0 0 9238 1785 9007 171932;171933;171934 105819 105819 1 IAQEDCR Unmodified 890.39162 0.39161532 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 8.3283 9.1873 2 0.00029567 2372 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 158.53 96.196 2112700000 428640000 131390000 0 0 0 0 256940000 215960000 193740000 0 0 0 0 115800000 74709000 0 0 0 234660000 210760000 250080000 0 0 0 9239 1733 9008 171935;171936;171937;171938;171939;171940;171941;171942;171943;171944 105820;105821;105822;105823;105824;105825;105826;105827;105828;105829;105830;105831;105832;105833 105826 14 IAQFNVVSEAHNEGTIVSVSDGVIR Unmodified 2640.3507 0.35074337 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 2 3 2 3 3 3 3 3 2 3 2 2 2 3 3 3 3 3 3 42.019 40.314 2;3;4 1.2388E-143 19572 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 458.7 450.79 7487800000 156800000 174810000 132510000 53121000 64186000 50123000 621380000 449510000 535940000 247600000 230950000 244900000 618160000 486210000 623340000 45494000 32499000 36451000 741580000 755450000 712780000 165830000 154030000 154190000 9240 645 9009 171945;171946;171947;171948;171949;171950;171951;171952;171953;171954;171955;171956;171957;171958;171959;171960;171961;171962;171963;171964;171965;171966;171967;171968;171969;171970;171971;171972;171973;171974;171975;171976;171977;171978;171979;171980;171981;171982;171983;171984;171985;171986;171987;171988;171989;171990;171991;171992;171993;171994;171995;171996;171997;171998;171999;172000;172001;172002;172003;172004;172005;172006;172007 105834;105835;105836;105837;105838;105839;105840;105841;105842;105843;105844;105845;105846;105847;105848;105849;105850;105851;105852;105853;105854;105855;105856;105857;105858;105859;105860;105861;105862;105863;105864;105865;105866;105867;105868;105869;105870;105871;105872;105873;105874;105875;105876;105877;105878;105879;105880;105881;105882;105883;105884 105871 51 IAQGHVWTGQDAK Unmodified 1409.7052 0.70516197 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 1 1 1 13.633 14.204 2;3 0.011874 3807 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 40.025 35.681 123830000 0 0 0 0 0 0 17671000 14100000 14012000 11614000 11604000 10306000 5485000 0 7432200 0 0 0 12803000 9453100 6232800 0 3113700 0 9241 188 9010 172008;172009;172010;172011;172012;172013;172014;172015;172016;172017;172018;172019;172020;172021;172022;172023;172024;172025;172026;172027 105885;105886;105887 105885 3 IAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGR Unmodified 3807.8315 0.83150805 135 P06968 dut Deoxyuridine 5'-triphosphate nucleotidohydrolase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 55.25 53.748 4 0.15681 26264 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 30.545 26.472 269450000 36976000 31625000 0 0 0 0 0 30959000 22539000 0 0 0 0 0 33971000 0 0 0 52946000 0 60432000 0 0 0 9242 135 9011 172028;172029;172030;172031;172032;172033;172034 105888 105888 0 IAQPELVNFR Unmodified 1185.6506 0.6506072 1676 P64483 yeaK Uncharacterized protein YeaK yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 33.454 32.215 2 8.2389E-07 15144 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 198.07 187.36 196820000 69425000 69830000 57562000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9243 1676 9012 172035;172036;172037 105889;105890 105890 2 IAQSGRPGPVWIDIPK Unmodified 1732.9624 0.96243929 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.709 33.289 3 0.0059972 15928 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.888 50.702 74448000 14409000 16563000 15575000 0 0 0 3130000 0 2473500 0 0 0 1787200 1988200 2389500 0 0 0 6040700 5256300 4836500 0 0 0 9244 173 9013 172038;172039;172040;172041;172042;172043;172044;172045;172046;172047;172048 105891;105892;105893 105891 3 IAQTLLNLAK Unmodified 1083.6652 0.66519463 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.672 33.112 2 1.7615E-05 15788 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.21 127.13 840720000 127840000 122640000 98756000 4943900 6221900 7731000 54693000 54066000 60393000 11924000 12575000 12210000 32869000 27345000 30653000 0 2373400 2713700 50520000 47465000 50284000 7783000 7204400 7515700 9245 734 9014 172049;172050;172051;172052;172053;172054;172055;172056;172057;172058;172059;172060;172061;172062;172063;172064;172065;172066;172067;172068;172069;172070;172071 105894;105895;105896;105897;105898;105899;105900;105901;105902;105903;105904;105905;105906;105907;105908;105909;105910;105911 105901 18 IAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGK Unmodified 3341.6714 0.67142558 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 4 3 2 2 2 3 4 3 2 2 3 2 2 2 2 3 5 3 2 1 2 54.824 53.536 3;4 4.1873E-56 26292 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 246.76 242.47 26530000000 4891800000 4456900000 4104700000 40300000 30954000 40723000 1905100000 1821800000 1862600000 10478000 0 0 1358700000 1211200000 1178200000 13401000 15279000 25424000 1272100000 1132100000 1142400000 6318400 2712100 6782200 9246 397 9015 172072;172073;172074;172075;172076;172077;172078;172079;172080;172081;172082;172083;172084;172085;172086;172087;172088;172089;172090;172091;172092;172093;172094;172095;172096;172097;172098;172099;172100;172101;172102;172103;172104;172105;172106;172107;172108;172109;172110;172111;172112;172113;172114;172115;172116;172117;172118;172119;172120;172121;172122;172123;172124;172125;172126;172127;172128 105912;105913;105914;105915;105916;105917;105918;105919;105920;105921;105922;105923;105924;105925;105926;105927;105928;105929;105930;105931;105932;105933;105934;105935;105936;105937;105938;105939;105940;105941;105942;105943;105944 105915 33 IARPDASSETLIR Unmodified 1427.7732 0.77324153 386 P0A809 ruvA Holliday junction ATP-dependent DNA helicase RuvA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.843 20.332 3 0.029341 8105 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 36.39 32.202 510770000 42652000 35949000 30462000 2273800 1886500 1624300 54471000 51998000 45642000 0 0 0 38891000 38346000 41386000 0 0 0 33402000 48226000 43565000 0 0 0 9247 386 9016 172129;172130;172131;172132;172133;172134;172135;172136;172137;172138;172139;172140;172141;172142;172143 105945;105946 105945 0 IARPGEFSER Unmodified 1160.5938 0.5938206 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.054 13.92 2 0.00078783 4231 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 101.9 79.659 110880000 8810800 12999000 10473000 0 0 0 7908400 8184300 9113300 0 0 0 9105600 9731500 8354200 0 0 0 7927300 9357900 8915000 0 0 0 9248 1256 9017 172144;172145;172146;172147;172148;172149;172150;172151;172152;172153;172154;172155 105947;105948;105949;105950;105951;105952;105953;105954;105955;105956;105957 105951 11 IASGDLTMNDEPAGR Unmodified 1545.7093 0.70932065 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 23.379 22.752 2 7.548E-27 9674 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 227.37 194 59784000 9133500 6259900 8255800 8843800 12459000 14832000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9249 114 9018 172156;172157;172158;172159;172160;172161 105958;105959;105960;105961;105962 105962 5 IASLSDSVSNAR Unmodified 1218.6204 0.62042929 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.549 19.871 2 1.9318E-06 7718 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.81 172.59 570550000 34112000 34948000 32730000 2163200 2274000 2208000 36544000 39062000 41001000 8260100 6325100 6977500 39428000 44128000 44079000 0 0 0 54295000 58400000 63263000 7053900 6989800 6304800 9250 1197 9019 172162;172163;172164;172165;172166;172167;172168;172169;172170;172171;172172;172173;172174;172175;172176;172177;172178;172179;172180;172181;172182 105963;105964;105965;105966;105967;105968;105969;105970;105971;105972;105973;105974;105975;105976;105977;105978;105979;105980 105969 14 IASSGLCGSDLPR Unmodified 1331.6503 0.65034921 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.438 22.849 2 1.6952E-18 10103 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 172.27 144.95 1366400000 293160000 279510000 272250000 0 0 0 0 0 0 0 0 0 63674000 62561000 52528000 0 0 0 110990000 122960000 108770000 0 0 0 9251 553 9020 172183;172184;172185;172186;172187;172188;172189;172190;172191;172192;172193;172194 105981;105982;105983;105984;105985;105986;105987;105988;105989;105990;105991;105992 105983 12 IASTLSPR Unmodified 843.48142 0.48141661 934 P0AFF2 nupC Nucleoside permease NupC yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.103 14.687 2 0.00067698 3896 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 127.84 71.334 669780000 14040000 0 0 0 2395200 0 108820000 114240000 119420000 18496000 12897000 14129000 37191000 32817000 31605000 3661900 2559800 2318100 52714000 51939000 50541000 0 0 0 9252 934 9021 172195;172196;172197;172198;172199;172200;172201;172202;172203;172204;172205;172206;172207;172208;172209;172210;172211;172212 105993;105994;105995;105996;105997;105998;105999;106000;106001;106002;106003;106004 105998 12 IASVQNTQK Unmodified 987.53491 0.53490874 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 10.807 11.508 2 2.1723E-08 2314 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 198.87 167.58 1041500000 0 0 0 17315000 21117000 20208000 270960000 0 0 60314000 0 51342000 211180000 190840000 179960000 0 0 18287000 0 0 0 0 0 0 9253 644 9022 172213;172214;172215;172216;172217;172218;172219;172220;172221;172222 106005;106006;106007;106008;106009;106010 106007 6 IATAVPDK Unmodified 813.45962 0.45961853 1220 P23857 pspE Thiosulfate sulfurtransferase PspE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.724 13.486 2 0.0027606 4073 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.798 62.906 224890000 18642000 15280000 0 0 0 0 36134000 32735000 34159000 0 3390000 2300500 14252000 13826000 14898000 0 0 0 11913000 14260000 13102000 0 0 0 9254 1220 9023 172223;172224;172225;172226;172227;172228;172229;172230;172231;172232;172233;172234;172235 106011;106012;106013;106014 106011 4 IATAVPDKNDTVK Unmodified 1370.7405 0.74054442 1220 P23857 pspE Thiosulfate sulfurtransferase PspE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.684 13.525 2;3 3.5877E-12 3990 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 220.25 181.98 2933500000 192820000 174970000 207760000 0 0 0 455070000 452920000 426320000 0 0 0 176560000 146110000 179770000 0 0 0 187870000 162260000 171070000 0 0 0 9255 1220 9024 172236;172237;172238;172239;172240;172241;172242;172243;172244;172245;172246;172247;172248;172249;172250;172251;172252;172253;172254;172255;172256;172257;172258;172259 106015;106016;106017;106018;106019;106020;106021;106022;106023;106024;106025;106026;106027;106028;106029;106030;106031;106032;106033;106034;106035 106025 21 IATDPFVGNLTFFR Unmodified 1596.83 0.83002813 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 54.007 52.697 2;3 1.0373E-45 26034 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 244.72 238.34 29255000000 2737300000 2466700000 2386000000 33935000 33589000 31514000 1689500000 1766900000 1935200000 18889000 23144000 18515000 2584000000 2414000000 2056200000 21362000 12531000 13736000 2967000000 2989400000 3003600000 14324000 14729000 23078000 9256 264 9025 172260;172261;172262;172263;172264;172265;172266;172267;172268;172269;172270;172271;172272;172273;172274;172275;172276;172277;172278;172279;172280;172281;172282;172283;172284;172285;172286;172287;172288;172289;172290;172291;172292;172293;172294;172295;172296;172297 106036;106037;106038;106039;106040;106041;106042;106043;106044;106045;106046;106047;106048;106049;106050;106051;106052;106053;106054;106055;106056;106057;106058;106059;106060;106061;106062;106063;106064;106065;106066;106067;106068 106044 33 IATHILDYQDEGK Unmodified 1501.7413 0.7412727 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 1 1 2 2 2 1 1 1 2 2 2 22.932 22.354 2;3 3.9985E-24 9787 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 240.8 237.26 516210000 19736000 24781000 20066000 0 0 0 59163000 60602000 69845000 0 0 0 15750000 10879000 8943800 0 0 0 72062000 80163000 74215000 0 0 0 9257 561 9026 172298;172299;172300;172301;172302;172303;172304;172305;172306;172307;172308;172309;172310;172311;172312;172313;172314;172315;172316 106069;106070;106071;106072;106073 106072 4 IATHILDYQDEGKVEFFEGNFTEYEEYK Unmodified 3413.5616 0.56158359 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 47.101 45.685 3;4 3.0164E-17 22309 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 156.73 155.7 734520000 56931000 47588000 37809000 1722700 0 0 71358000 52703000 56239000 0 2638000 0 52722000 47803000 54050000 0 0 0 87916000 77678000 87359000 0 0 0 9258 561 9027 172317;172318;172319;172320;172321;172322;172323;172324;172325;172326;172327;172328;172329;172330;172331;172332;172333;172334;172335;172336;172337;172338;172339;172340;172341;172342 106074;106075;106076;106077;106078;106079;106080;106081;106082;106083;106084;106085;106086;106087;106088 106078 15 IATMGSTGTSSTR Unmodified 1268.6031 0.60306466 777 P0ADA3 nlpD Murein hydrolase activator NlpD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.624 13.264 2 9.8111E-06 3226 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 120.06 108.29 546170000 104840000 104220000 0 893450 1007000 1459700 46196000 43212000 35625000 4441100 6114700 4581800 0 38307000 29693000 1345000 0 1087900 45881000 33477000 36860000 2859200 4062100 0 9259 777 9028 172343;172344;172345;172346;172347;172348;172349;172350;172351;172352;172353;172354;172355;172356;172357;172358;172359;172360;172361;172362 106089;106090;106091;106092 106091 4 IATTLIAK Unmodified 829.5273 0.52730417 1546 P39835 gntT High-affinity gluconate transporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.256 20.389 2 0.00043426 7973 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 139.31 111.21 806960000 0 0 0 0 0 0 67184000 65179000 75532000 16921000 20323000 20481000 84696000 72606000 74973000 0 0 3965100 90190000 84918000 87719000 14080000 12931000 15258000 9260 1546 9029 172363;172364;172365;172366;172367;172368;172369;172370;172371;172372;172373;172374;172375;172376;172377;172378 106093;106094;106095;106096;106097;106098;106099;106100;106101;106102;106103;106104;106105;106106 106102 14 IATVTNFPHGNDDIDIALAETR Unmodified 2382.1816 0.18155278 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 41.518 39.831 2;3 6.3771E-38 18673 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 237.59 225.43 7282900000 356460000 324710000 260500000 1529000 1560900 1450700 944490000 990570000 888930000 0 1525200 2128300 658340000 502020000 566190000 0 0 1250000 599450000 632800000 547970000 0 1014800 0 9261 257 9030 172379;172380;172381;172382;172383;172384;172385;172386;172387;172388;172389;172390;172391;172392;172393;172394;172395;172396;172397;172398 106107;106108;106109;106110;106111;106112;106113;106114;106115;106116;106117;106118;106119 106118 13 IAVDAIR Unmodified 756.44939 0.4493882 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 19.518 19.976 2 0.0014353 7660 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.05 60.817 513570000 91650000 107940000 79055000 0 0 0 0 41001000 41583000 0 0 0 0 0 0 0 0 0 51692000 49905000 50741000 0 0 0 9262 44 9031 172399;172400;172401;172402;172403;172404;172405;172406 106120;106121;106122 106120 3 IAVEVAYALPEK Unmodified 1301.7231 0.72310344 1606 P52119 ratB UPF0125 protein RatB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.24 35.414 2 0.0020455 17258 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.5 61.049 153270000 14245000 11043000 0 1202600 1177300 761530 10194000 13956000 10509000 0 1166100 1284100 11927000 11431000 12217000 0 0 0 15441000 15646000 15976000 2351500 1348000 1391400 9263 1606 9032 172407;172408;172409;172410;172411;172412;172413;172414;172415;172416;172417;172418;172419;172420;172421;172422;172423;172424;172425 106123;106124;106125;106126;106127;106128 106126 0 IAVIGECMIELSEK Unmodified 1590.7997 0.79971556 1481 P37647 kdgK 2-dehydro-3-deoxygluconokinase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 46.025 44.567 2 0.020462 21742 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.172 52.139 82937000 0 7709900 7935800 0 0 0 11022000 0 19719000 0 0 0 0 6888000 6968200 0 0 0 4711600 12257000 5724800 0 0 0 9264 1481 9033 172426;172427;172428;172429;172430;172431;172432;172433;172434 106129;106130;106131;106132;106133;106134 106129 0 IAVIGLTTDDTAK Unmodified 1316.7187 0.71874635 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.073 32.624 2 6.0813E-08 14974 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 156.48 126.74 848240000 91577000 99561000 84113000 0 0 0 106060000 99572000 93211000 0 0 0 40624000 39292000 38860000 0 0 0 59260000 47585000 48526000 0 0 0 9265 154 9034 172435;172436;172437;172438;172439;172440;172441;172442;172443;172444;172445;172446 106135;106136;106137;106138;106139;106140;106141;106142;106143 106141 9 IAVLITDEFEDSEFTSPADEFRK Unmodified 2658.2701 0.27009301 1570 P45470 yhbO Protein YhbO yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.456 48.99 3 4.2902E-22 23837 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 170.91 168.18 80255000 17083000 16247000 10407000 1655800 1777700 0 11516000 12102000 9467000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9266 1570 9035 172447;172448;172449;172450;172451;172452;172453;172454 106144;106145;106146 106146 3 IAVLLGGTSAER Unmodified 1185.6717 0.67173657 171 P07862 ddlB D-alanine--D-alanine ligase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.443 28.187 2 3.427E-06 13355 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 135.43 104.36 440980000 43088000 31615000 35728000 0 0 0 38204000 33536000 36371000 0 0 0 29204000 29986000 29852000 0 0 0 43355000 44994000 45044000 0 0 0 9267 171 9036 172455;172456;172457;172458;172459;172460;172461;172462;172463;172464;172465;172466 106147;106148;106149;106150;106151;106152;106153;106154;106155;106156;106157 106149 6 IAVMWSEK Unmodified 962.48954 0.48953845 770 P0AD59 ivy Inhibitor of vertebrate lysozyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.161 27.735 2 0.00073819 12814 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.25 106.47 211300000 28248000 32199000 26375000 1631200 1187300 1097900 17497000 21892000 21184000 6844800 6106000 6168800 5552300 6313900 5268200 0 1369800 0 6880900 5614500 5781200 1367300 1233900 1483400 9268 770 9037 172467;172468;172469;172470;172471;172472;172473;172474;172475;172476;172477;172478;172479;172480;172481;172482;172483;172484;172485;172486;172487;172488 106158;106159;106160;106161;106162;106163;106164;106165;106166;106167 106164 8 IAVNTAK Unmodified 715.42284 0.4228391 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.318 11.909 2 0.0015084 2557 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 128.75 76.524 1518600000 39453000 43446000 40943000 1664900 1776100 2454300 0 0 0 16066000 13692000 13109000 42808000 36314000 34505000 387310000 299610000 397790000 42524000 54986000 41579000 0 5154200 3438200 9269 1005 9038 172489;172490;172491;172492;172493;172494;172495;172496;172497;172498;172499;172500;172501;172502;172503;172504;172505;172506;172507;172508 106168;106169;106170 106170 3 IAVNYPR Unmodified 831.46029 0.46028724 1382 P31808 yciK Uncharacterized oxidoreductase YciK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.412 19.043 2 0.0006648 7376 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.12 90.653 262780000 39855000 34760000 34891000 0 705990 770500 11528000 13736000 13669000 0 0 0 18378000 14499000 15101000 0 0 0 22969000 20532000 21389000 0 0 0 9270 1382 9039 172509;172510;172511;172512;172513;172514;172515;172516;172517;172518;172519;172520;172521;172522 106171;106172;106173;106174;106175;106176;106177;106178;106179;106180;106181;106182 106171 12 IAVPDGEK Unmodified 827.43888 0.43888309 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.885 15.447 2 0.0097902 5039 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.469 33.098 253150000 110190000 104480000 0 0 0 0 3513500 3682300 2617200 9685500 4269200 5808900 0 1717100 0 0 0 0 2161200 2905400 2123400 0 0 0 9271 71 9040 172523;172524;172525;172526;172527;172528;172529;172530;172531;172532;172533;172534;172535 106183;106184 106183 2 IAVTNLR Unmodified 785.47594 0.4759373 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 18.112 18.555 2 0.00066643 5656 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 148.07 40.522 1750400000 56039000 53192000 57554000 24799000 22899000 23135000 131270000 146380000 126240000 34938000 36713000 42575000 107750000 112600000 100330000 0 0 0 192990000 182590000 174230000 43427000 41333000 39375000 9272 927 9041 172536;172537;172538;172539;172540;172541;172542;172543;172544;172545;172546;172547;172548;172549;172550;172551;172552;172553;172554;172555;172556;172557 106185;106186;106187;106188;106189;106190;106191;106192;106193;106194;106195;106196;106197;106198;106199;106200;106201;106202;106203;106204 106186 20 IAVYSSLIK Unmodified 992.59063 0.59063271 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.564 30.972 2 7.9621E-05 14417 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.39 112.24 3392100000 203170000 214360000 175410000 1229300 1233800 1059800 404560000 382140000 377830000 1835100 2544100 1502400 292120000 285690000 298320000 0 0 0 237530000 260180000 240850000 4005800 3667600 2879300 9273 697 9042 172558;172559;172560;172561;172562;172563;172564;172565;172566;172567;172568;172569;172570;172571;172572;172573;172574;172575;172576;172577;172578 106205;106206;106207;106208;106209;106210;106211;106212;106213;106214;106215;106216;106217;106218;106219 106216 15 IAWALENKPR Unmodified 1196.6666 0.66659162 1738 P69739 hyaA Hydrogenase-1 small chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 22.256 21.771 2;3 0.00012787 9261 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 115.13 112.15 127340000 0 0 0 0 0 0 28084000 28217000 24652000 16956000 12425000 11624000 1848600 1394800 1763600 0 0 0 0 0 0 0 0 378730 9274 1738 9043 172579;172580;172581;172582;172583;172584;172585;172586;172587;172588;172589;172590;172591;172592;172593;172594 106220;106221;106222;106223;106224;106225;106226;106227;106228 106226 8 IAYDTLVMALGSTSNDFNTPGVK Unmodified 2413.1835 0.18352661 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.97 52.686 3 1.0834E-07 21138 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 110.98 107.74 254780000 11260000 7432100 8611300 0 4819700 0 2922900 30051000 26952000 18966000 12070000 15319000 0 24305000 15448000 7308700 5616900 0 15853000 21081000 16835000 0 5523400 4406600 9275 27 9044 172595;172596;172597;172598;172599;172600;172601;172602;172603;172604;172605;172606;172607;172608;172609;172610;172611;172612;172613 106229;106230;106231;106232;106233;106234 106230 6 IAYNVEAAR Unmodified 1005.5243 0.52434406 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1 1 2 2 3 5 3 1 2 2 2 7 7 6 2 2 2 4 3 3 18.846 19.016 2 1.2258E-05 5243 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 163.67 127.79 64205000000 717920000 681220000 594440000 68888000 58589000 62295000 898120000 866550000 814810000 4896000000 3584100000 3709200000 773960000 763820000 682410000 9336500000 8547300000 8983500000 985870000 964900000 897590000 5386600000 5092800000 4837700000 9276 383 9045 172614;172615;172616;172617;172618;172619;172620;172621;172622;172623;172624;172625;172626;172627;172628;172629;172630;172631;172632;172633;172634;172635;172636;172637;172638;172639;172640;172641;172642;172643;172644;172645;172646;172647;172648;172649;172650;172651;172652;172653;172654;172655;172656;172657;172658;172659;172660;172661;172662;172663;172664;172665;172666;172667;172668;172669;172670;172671;172672;172673;172674;172675;172676;172677;172678;172679;172680;172681 106235;106236;106237;106238;106239;106240;106241;106242;106243;106244;106245;106246;106247;106248;106249;106250;106251;106252;106253;106254;106255;106256;106257;106258;106259;106260;106261;106262;106263;106264;106265;106266;106267;106268;106269;106270;106271;106272;106273;106274;106275;106276;106277;106278;106279;106280;106281;106282;106283;106284;106285;106286;106287;106288;106289;106290;106291 106235 51 IAYVVQTNGGQFPYELR Unmodified 1953.9949 0.99486163 398 P0A855 tolB Protein TolB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.003 42.273 2 1.0191E-13 20631 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 195.25 183.08 79321000 8205600 0 5897600 1856000 0 2489100 5951400 4084800 3786200 0 3212600 4005700 0 3650400 4623400 0 0 0 7995000 7369700 5906400 4303000 3686800 2297400 9277 398 9046 172682;172683;172684;172685;172686;172687;172688;172689;172690;172691;172692;172693;172694;172695;172696;172697;172698 106292;106293;106294;106295 106295 4 ICAETGK Unmodified 777.36909 0.36908897 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 2 1 1 1 1 1 9.2874 10.137 2 0.0021148 1974 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 118.01 81.424 1758900000 0 189500000 171490000 0 0 0 84537000 81621000 89981000 0 0 0 267050000 222200000 101320000 0 0 0 0 255110000 296130000 0 0 0 9278 697 9047 172699;172700;172701;172702;172703;172704;172705;172706;172707;172708;172709;172710;172711 106296;106297;106298;106299;106300;106301;106302;106303;106304;106305 106297 10 ICEHYVTVTQK Unmodified 1376.6758 0.67583567 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 13.991 14.865 2;3 2.9272E-10 4822 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 211.78 198.4 6367200000 306850000 317240000 263190000 1532600 1737400 2505200 648990000 639600000 561620000 0 0 0 630780000 663870000 608820000 0 0 0 629880000 497980000 592590000 0 0 0 9279 299 9048 172712;172713;172714;172715;172716;172717;172718;172719;172720;172721;172722;172723;172724;172725;172726;172727;172728;172729;172730;172731;172732;172733;172734;172735;172736;172737;172738;172739 106306;106307;106308;106309;106310;106311;106312;106313;106314;106315;106316;106317;106318;106319;106320;106321;106322;106323;106324;106325;106326;106327 106309 22 ICEMLAR Unmodified 891.43064 0.43064337 1021 P0AGJ2 trmH tRNA (guanosine(18)-2'-O)-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.025 19.421 2 0.02186 7076 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 75.269 60.493 107520000 0 11897000 11092000 285510 247170 0 5003200 5851300 6422600 0 0 0 8295300 7901100 5054700 2742400 2348700 3209900 12010000 11135000 9471600 1642200 1260700 1645800 9280 1021 9049 172740;172741;172742;172743;172744;172745;172746;172747;172748;172749;172750;172751;172752;172753;172754;172755;172756;172757;172758 106328;106329;106330;106331;106332 106330 5 ICGVCTTTHALSSVR Unmodified 1660.8025 0.80250953 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 20.17 20.32 2;3 1.2126E-15 8016 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 199.8 181.99 3199500000 7320800 0 0 260410 0 0 303450000 219900000 242340000 51342000 52595000 50448000 344590000 258680000 270380000 16087000 12877000 11094000 417420000 379240000 424740000 47622000 44832000 44306000 9281 723 9050 172759;172760;172761;172762;172763;172764;172765;172766;172767;172768;172769;172770;172771;172772;172773;172774;172775;172776;172777;172778;172779;172780;172781;172782;172783;172784;172785;172786;172787;172788;172789;172790;172791;172792;172793;172794;172795 106333;106334;106335;106336;106337;106338;106339;106340;106341;106342;106343;106344;106345;106346;106347;106348;106349;106350;106351;106352;106353;106354;106355;106356;106357;106358;106359;106360;106361;106362;106363 106355 31 ICHLNNCATGVATQDDK Unmodified 1915.8516 0.85164456 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 13.698 14.588 2;3 4.0743E-31 4672 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 289.72 288.53 897140000 143050000 179710000 134500000 570050 382000 466190 69063000 77443000 74057000 0 0 0 35625000 33657000 29835000 0 0 0 40599000 39057000 39126000 0 0 0 9282 218 9051 172796;172797;172798;172799;172800;172801;172802;172803;172804;172805;172806;172807;172808;172809;172810;172811;172812;172813;172814;172815;172816;172817;172818;172819;172820;172821;172822 106364;106365;106366;106367;106368;106369;106370;106371;106372;106373;106374;106375;106376;106377;106378;106379;106380;106381;106382;106383;106384;106385;106386 106367 23 ICHLNNCATGVATQDDKLR Unmodified 2185.0368 0.036819572 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 16.129 16.829 4 4.3858E-05 5901 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.638 75.534 29973000 9259900 7292500 13421000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9283 218 9052 172823;172824;172825 106387 106387 1 ICHQSVEK Unmodified 999.48076 0.48076468 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 4.8447 5.932 2 0.015232 918 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 70.525 60.218 36881000 0 0 0 12627000 11059000 13196000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9284 1904 9053 172826;172827;172828 106388;106389;106390 106390 3 ICLEPQACLLAATVGTAEQK Unmodified 2172.0919 0.091874835 1370 P31475 yieP Uncharacterized HTH-type transcriptional regulator YieP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 49.428 48.064 2;3 4.522E-18 23239 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 209.11 204.31 320700000 29951000 29462000 22305000 0 0 0 30807000 34618000 25629000 0 0 0 26401000 25045000 29212000 0 0 0 18663000 25362000 23244000 0 0 0 9285 1370 9054 172829;172830;172831;172832;172833;172834;172835;172836;172837;172838;172839;172840;172841;172842;172843;172844;172845;172846;172847;172848;172849;172850;172851;172852 106391;106392;106393;106394;106395;106396;106397;106398;106399;106400;106401;106402;106403;106404;106405;106406;106407;106408 106397 18 ICLFTVSDDGHLVAQDPAEVTTVEGAGPR Unmodified 3053.4764 0.47641417 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 46.876 45.637 3;4 2.0069E-12 22344 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.04 128.14 1011200000 377470000 327850000 305910000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9286 1610 9055 172853;172854;172855;172856;172857;172858 106409;106410;106411;106412 106409 4 ICNDYIVNEQHAVSACLGYHGYPK Unmodified 2807.2796 0.27956904 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.032 32.583 3;4 2.1906E-10 15925 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.05 126.88 918320000 107090000 99852000 81633000 0 0 0 84101000 84980000 66190000 0 0 0 51604000 57434000 54696000 0 0 0 71936000 89279000 69527000 0 0 0 9287 829 9056 172859;172860;172861;172862;172863;172864;172865;172866;172867;172868;172869;172870;172871;172872;172873;172874;172875;172876;172877;172878;172879;172880;172881;172882 106413;106414;106415;106416;106417;106418;106419;106420;106421;106422;106423;106424;106425;106426;106427 106413 15 ICQEMNIK Unmodified 1034.4889 0.48888653 1595 P51025 frmB S-formylglutathione hydrolase FrmB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 15.644 16.469 2 0.0010943 5382 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 111.73 92.945 274610000 10865000 0 0 0 0 0 30901000 34684000 29649000 0 0 0 30464000 26853000 23832000 0 0 0 29565000 31480000 26317000 0 0 0 9288 1595 9057 172883;172884;172885;172886;172887;172888;172889;172890;172891;172892 106428;106429;106430;106431;106432;106433;106434;106435;106436 106434 9 ICSIPHPSYHEEQLAEYIVGWAK Unmodified 2726.3163 0.31627212 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 3 3 1 1 4 3 3 3 3 3 46.983 45.544 2;3;4 1.8373E-53 22708 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 295.43 279.55 7635200000 325280000 728870000 773100000 0 0 0 885710000 886540000 811930000 1935100 2490600 0 539480000 418880000 442690000 0 0 0 672900000 564750000 580600000 0 0 0 9289 1109 9058 172893;172894;172895;172896;172897;172898;172899;172900;172901;172902;172903;172904;172905;172906;172907;172908;172909;172910;172911;172912;172913;172914;172915;172916;172917;172918;172919;172920;172921;172922;172923;172924;172925;172926;172927;172928;172929;172930 106437;106438;106439;106440;106441;106442;106443;106444;106445;106446;106447;106448;106449;106450;106451;106452;106453;106454;106455;106456;106457;106458;106459;106460;106461;106462;106463;106464;106465;106466;106467;106468 106442 32 ICSNADLIYGAK Unmodified 1323.6493 0.64928657 866 P0AEJ6 eutB Ethanolamine ammonia-lyase heavy chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 26.575 25.32 2 0.0016308 11310 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.893 60.673 44034000 9081400 7017400 8930100 1649000 1812600 1384000 0 4102000 0 1065200 0 0 0 0 0 0 0 0 0 5376100 0 0 1748400 1868300 9290 866 9059 172931;172932;172933;172934;172935;172936;172937;172938;172939;172940;172941 106469;106470;106471 106471 1 ICTLGEK Unmodified 819.41604 0.41603916 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 12.726 13.454 2 0.0012423 3933 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.47 96.882 1093000000 79564000 68217000 68708000 4144500 0 3908300 96593000 90036000 89775000 11818000 12126000 13985000 82746000 95964000 72678000 0 0 0 101170000 96264000 96102000 0 9165000 0 9291 883 9060 172942;172943;172944;172945;172946;172947;172948;172949;172950;172951;172952;172953;172954;172955;172956;172957;172958;172959;172960 106472;106473;106474;106475;106476;106477;106478;106479;106480 106475 9 ICTPGSR Unmodified 789.38032 0.38032236 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 1 1 2 3 1 1 2 2 2 1 3 12.188 12.984 2 0.022293 3376 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 74.832 34.146 3147800000 216280000 223150000 193290000 396430 0 0 372390000 383750000 396710000 1643800 0 0 285530000 276050000 298100000 0 0 0 258850000 27834000 213850000 0 0 0 9292 46 9061 172961;172962;172963;172964;172965;172966;172967;172968;172969;172970;172971;172972;172973;172974;172975;172976;172977;172978;172979;172980;172981;172982;172983;172984;172985;172986;172987;172988 106481;106482;106483;106484;106485;106486;106487;106488;106489;106490;106491 106489 11 ICTPQASLSDEAWEK Unmodified 1733.7931 0.79305028 1951 Q2M7X4 yicS Uncharacterized protein YicS yes yes 0 0 0 By MS/MS 1 32.729 31.476 2 1.5145E-06 14971 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.94 109.66 12329000 12329000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9293 1951 9062 172989 106492 106492 1 ICVVGISGLMDFQAHLAAASLR Unmodified 2328.2082 0.208242 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.393 52.931 3 6.494E-22 26223 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 168.27 163.82 208370000 0 0 0 0 0 0 34386000 30654000 28479000 0 0 0 22787000 27075000 23682000 0 0 0 19925000 9526500 11856000 0 0 0 9294 1087 9063 172990;172991;172992;172993;172994;172995;172996;172997;172998 106493;106494 106493 2 IDAAFQDEVAASEGFLK Unmodified 1809.8785 0.87849447 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 2 2 1 49.275 47.962 2;3 1.0212E-13 23395 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 159.08 141.27 315780000 91735000 79466000 73381000 0 0 0 2511900 0 0 0 0 0 2898300 1909500 2794200 0 0 0 29704000 28134000 3250100 0 0 0 9295 887 9064 172999;173000;173001;173002;173003;173004;173005;173006;173007;173008;173009;173010;173011;173012;173013 106495;106496;106497;106498 106497 4 IDAAIAATR Unmodified 900.50288 0.50288033 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.306 17.988 2 5.8572E-05 6542 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.81 46.622 1138300000 56594000 48272000 47476000 0 0 0 152720000 165600000 152410000 0 0 0 100950000 88974000 86839000 0 0 0 79344000 76763000 82380000 0 0 0 9296 1959 9065 173014;173015;173016;173017;173018;173019;173020;173021;173022;173023;173024;173025 106499;106500;106501;106502;106503;106504;106505;106506;106507;106508;106509;106510 106503 8 IDAIDVTSK Unmodified 960.51278 0.51277632 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 21.091 21.414 2 0.0022864 8585 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 85.676 68.9 236990000 0 0 45243000 0 0 0 17464000 20295000 15729000 0 0 0 17311000 18554000 21032000 0 0 0 26696000 29402000 25264000 0 0 0 9297 1067 9066 173026;173027;173028;173029;173030;173031;173032;173033;173034;173035 106511;106512;106513;106514;106515 106512 4 IDAIIKPFK Unmodified 1043.6379 0.63791725 567 P0A9Z1 glnB Nitrogen regulatory protein P-II 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.523 26.375 2 0.0016948 11812 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.253 75.733 370700000 35000000 43584000 38550000 0 0 0 30906000 27616000 27666000 0 0 0 25818000 29149000 25487000 0 0 0 30326000 27821000 28776000 0 0 0 9298 567 9067 173036;173037;173038;173039;173040;173041;173042;173043;173044;173045;173046;173047 106516;106517;106518;106519;106520;106521 106518 6 IDAILVDR Unmodified 913.52328 0.52328142 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1 2 1 1 1 1 1 1 28.625 27.386 2 0.00011058 12095 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 159.04 85.065 4623100000 597020000 547200000 511220000 0 0 0 405660000 429190000 394820000 0 0 0 240350000 236290000 266300000 0 0 0 338010000 325980000 330610000 466330 0 0 9299 874 9068 173048;173049;173050;173051;173052;173053;173054;173055;173056;173057;173058;173059;173060;173061;173062;173063 106522;106523;106524;106525;106526;106527;106528;106529;106530;106531;106532;106533 106532 12 IDAINITEVR Unmodified 1142.6295 0.62953741 1156 P19318 narY Respiratory nitrate reductase 2 beta chain yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 33.117 31.875 2 0.011016 15018 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 64.654 48.992 34839000 11376000 12231000 8068400 0 0 0 0 0 0 0 0 0 3164600 0 0 0 0 0 0 0 0 0 0 0 9300 1156 9069 173064;173065;173066;173067 106534 106534 0 IDAQGGSGIQTVTDLHQLLK Unmodified 2093.1117 0.1116823 1946 P78055 fsaA Fructose-6-phosphate aldolase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.314 39.649 3 0.0018503 19789 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 58.997 54.645 183560000 14815000 14843000 10785000 0 0 0 22207000 17896000 19640000 0 0 0 13252000 12133000 12315000 0 0 0 16901000 16586000 12189000 0 0 0 9301 1946 9070 173068;173069;173070;173071;173072;173073;173074;173075;173076;173077;173078;173079 106535;106536 106535 2 IDAVNEYNQK Unmodified 1192.5724 0.57241646 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.118 15.67 2 9.1741E-09 5175 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 184.49 149.05 922730000 22372000 22286000 22601000 9892800 8426700 9441100 77767000 84038000 76015000 96163000 78842000 85657000 52020000 49010000 45492000 4013100 4261100 3817000 43317000 45233000 50790000 10848000 10019000 10408000 9302 1944 9071 173080;173081;173082;173083;173084;173085;173086;173087;173088;173089;173090;173091;173092;173093;173094;173095;173096;173097;173098;173099;173100;173101;173102;173103 106537;106538;106539;106540;106541;106542;106543;106544;106545;106546;106547;106548;106549;106550;106551;106552;106553;106554 106551 18 IDAVVASNDATAGGAIQALSAQGLSGK Unmodified 2484.282 0.2819951 1470 P37387 xylF D-xylose-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 45.709 44.156 3 6.8512E-11 21809 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.26 118.68 39009000 28063000 2729400 0 0 0 0 0 3548400 4668100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9303 1470 9072 173104;173105;173106;173107 106555 106555 1 IDCEIENGVVSK Unmodified 1361.6497 0.6496805 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.786 22.221 2 3.45E-17 9417 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 219.03 215.45 680640000 0 0 0 0 0 0 58972000 64524000 54402000 26292000 0 12744000 64554000 56760000 59487000 5074400 4224900 2746200 72614000 78944000 86165000 11282000 11326000 10527000 9304 723 9073 173108;173109;173110;173111;173112;173113;173114;173115;173116;173117;173118;173119;173120;173121;173122;173123;173124;173125 106556;106557;106558;106559;106560;106561;106562;106563;106564;106565;106566;106567;106568;106569;106570;106571 106567 15 IDDDLTLLSETLEEVLR Unmodified 1973.0205 0.020467256 861 P0AEH5 elaB Protein ElaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 2 2 2 1 2 2 2 2 1 1 1 2 2 1 1 55.844 54.398 2;3 1.8379E-24 26990 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 259.85 193.26 1029200000 85335000 79786000 67905000 74151000 71389000 89729000 108580000 49460000 100410000 66258000 75075000 63131000 11652000 11131000 0 0 0 0 6511500 25181000 23063000 10908000 0 9539500 9305 861 9074 173126;173127;173128;173129;173130;173131;173132;173133;173134;173135;173136;173137;173138;173139;173140;173141;173142;173143;173144;173145;173146;173147;173148;173149;173150;173151;173152;173153;173154;173155;173156 106572;106573;106574;106575;106576;106577;106578;106579;106580;106581;106582;106583;106584;106585;106586;106587;106588;106589;106590;106591;106592;106593;106594 106591 23 IDDEQIFYLR Unmodified 1310.6507 0.65066678 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.221 41.686 2 4.3417E-09 20160 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 194.29 175.32 199490000 23793000 25203000 21063000 0 0 0 27786000 21455000 23419000 0 0 0 9706800 7881200 0 0 0 0 13916000 13979000 11290000 0 0 0 9306 1926 9075 173157;173158;173159;173160;173161;173162;173163;173164;173165;173166;173167 106595;106596 106596 2 IDDGQMGVILK Unmodified 1187.622 0.62200919 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.872 32.237 2 0.053386 14669 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 50.473 45.487 118840000 6233400 10112000 6408500 0 0 0 7585200 8751700 9165100 1876300 1949100 2593800 8751300 8824800 7340400 0 0 0 13304000 14863000 11088000 0 0 0 9307 1932 9076 173168;173169;173170;173171;173172;173173;173174;173175;173176;173177;173178;173179;173180;173181;173182 106597;106598;106599 106599 0 IDDIDHEIADLQAK Unmodified 1594.7839 0.7838658 1039 P0C0L7 proP Proline/betaine transporter yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 34.561 32.873 2;3 2.1977E-26 15898 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 231.83 202.06 919800000 32088000 44026000 37429000 7297400 8232700 7856300 84092000 96544000 89488000 33228000 33945000 29229000 54203000 50692000 52961000 0 0 0 78228000 70602000 71076000 11022000 14860000 12700000 9308 1039 9077 173183;173184;173185;173186;173187;173188;173189;173190;173191;173192;173193;173194;173195;173196;173197;173198;173199;173200;173201;173202;173203;173204;173205;173206;173207;173208;173209;173210;173211;173212;173213;173214;173215;173216;173217;173218;173219;173220;173221;173222 106600;106601;106602;106603;106604;106605;106606;106607;106608;106609;106610;106611;106612;106613;106614;106615;106616;106617;106618;106619;106620;106621;106622;106623;106624;106625 106610 24 IDDIDLNLEDFVQR Unmodified 1703.8366 0.83662965 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 2 2 2 1 2 2 2 2 2 2 1 53.696 52.26 2;3 8.5415E-27 25554 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 296.65 277.01 1628100000 165520000 14087000 15399000 1436500 0 0 114730000 142910000 140440000 0 0 2130600 152680000 153950000 126130000 0 0 0 206060000 197770000 192420000 2465700 0 0 9309 60 9078 173223;173224;173225;173226;173227;173228;173229;173230;173231;173232;173233;173234;173235;173236;173237;173238;173239;173240;173241;173242;173243;173244;173245;173246;173247;173248 106626;106627;106628;106629;106630;106631;106632;106633;106634;106635;106636;106637;106638;106639;106640;106641;106642;106643;106644;106645;106646 106634 21 IDEDLKNQAADVLAGMGLTISDLVR Unmodified 2656.3742 0.37418093 1974 Q47150 dinJ Antitoxin DinJ yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 55.503 54.184 3 9.6903E-05 19891 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 76.152 73.39 41717000 0 0 0 13202000 15210000 13306000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9310 1974 9079 173249;173250;173251 106647;106648 106648 2 IDEIPFDFER Unmodified 1279.6085 0.60846762 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.177 44.887 2 0.00014097 21083 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 136.57 121.89 579140000 0 0 0 0 945260 943330 0 8103000 0 0 3094400 2957500 130730000 125940000 141790000 17583000 12978000 14271000 34254000 40085000 31401000 6414600 7651900 0 9311 647 9080 173252;173253;173254;173255;173256;173257;173258;173259;173260;173261;173262;173263;173264;173265;173266;173267 106649;106650;106651;106652;106653;106654;106655 106651 7 IDELMQK Unmodified 875.44225 0.44225391 430 P0A8H6 yihI Der GTPase-activating protein YihI yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.705 17.462 2 0.00085422 6236 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.09 116.98 190420000 29324000 30222000 31816000 0 0 0 12157000 13157000 13232000 0 0 0 7096800 8525100 11534000 0 0 0 11998000 11529000 9833300 0 0 0 9312 430 9081 173268;173269;173270;173271;173272;173273;173274;173275;173276;173277;173278;173279 106656;106657 106656 2 IDEQNMQGGNSLLLHLDDWEHLDNYFR Unmodified 3271.4993 0.49927488 1879 P76621 csiD Protein CsiD yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 54.252 52.842 4 1.2362E-07 26001 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.97 100.99 166110000 54531000 47019000 46906000 0 0 0 0 0 0 0 0 0 0 0 2112200 0 0 0 11335000 4205500 0 0 0 0 9313 1879 9082 173280;173281;173282;173283;173284;173285 106658;106659 106658 2 IDESGFDIR Unmodified 1050.4982 0.49818889 976 P0AG07 rpe Ribulose-phosphate 3-epimerase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.964 27.708 2 0.01399 12833 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.224 30.665 547810000 71544000 80824000 78508000 0 0 0 37693000 39618000 37971000 0 0 0 24758000 22408000 24016000 0 0 0 42707000 41154000 46611000 0 0 0 9314 976 9083 173286;173287;173288;173289;173290;173291;173292;173293;173294;173295;173296;173297 106660;106661 106660 0 IDETIAQVTGSAHVGNLYVNR Unmodified 2256.1499 0.14985872 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 1 1 2 2 2 1 1 1 1 2 2 2 2 37.302 35.359 2;3 8.2433E-28 13950 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 182.95 177.88 606290000 13987000 17605000 17299000 24101000 18430000 19628000 13740000 18056000 14422000 46046000 45908000 43546000 0 8458600 9549600 0 0 0 34934000 35696000 44575000 63155000 56770000 60388000 9315 215 9084 173298;173299;173300;173301;173302;173303;173304;173305;173306;173307;173308;173309;173310;173311;173312;173313;173314;173315;173316;173317;173318;173319;173320;173321;173322;173323;173324;173325;173326 106662;106663;106664;106665;106666;106667;106668;106669;106670;106671;106672;106673;106674;106675;106676;106677;106678;106679;106680 106663 18 IDEVFIGSCMTNIGHFR Unmodified 1994.9343 0.93425198 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 43.852 42.452 2;3 1.372E-24 20703 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 249.2 227.15 5020200000 772360000 698310000 682780000 0 3234600 0 275280000 266940000 252800000 0 0 0 291040000 267780000 230800000 2582200 0 3016700 421580000 433280000 418460000 0 0 0 9316 1444 9085 173327;173328;173329;173330;173331;173332;173333;173334;173335;173336;173337;173338;173339;173340;173341;173342;173343;173344;173345;173346;173347;173348;173349;173350;173351;173352;173353 106681;106682;106683;106684;106685;106686;106687;106688;106689;106690;106691;106692;106693;106694;106695;106696;106697;106698;106699;106700;106701;106702;106703;106704 106689 23 IDEVLAPFVTASYNK Unmodified 1665.8614 0.86138784 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.111 46.738 2 3.2557E-07 23247 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130.01 122.76 318290000 5410500 4765900 5651600 0 0 0 47473000 41563000 41923000 0 0 0 29222000 29705000 31814000 0 0 0 27411000 27880000 25474000 0 0 0 9317 1323 9086 173354;173355;173356;173357;173358;173359;173360;173361;173362;173363;173364;173365 106705;106706;106707;106708;106709;106710;106711;106712 106705 8 IDEVVVFHPLGEQHIASIAQIQLK Unmodified 2683.4697 0.4697363 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 46.212 44.721 3;4 2.6003E-31 21810 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 200.95 200.64 2654000000 307350000 236070000 228810000 6021900 5152100 3970800 417330000 383190000 307440000 20109000 13703000 10900000 115540000 109880000 108140000 3809900 1915100 2929400 134090000 123540000 111540000 0 2627700 0 9318 1662 9087 173366;173367;173368;173369;173370;173371;173372;173373;173374;173375;173376;173377;173378;173379;173380;173381;173382;173383;173384;173385;173386;173387;173388;173389;173390;173391;173392;173393;173394;173395;173396;173397;173398;173399;173400;173401;173402;173403;173404 106713;106714;106715;106716;106717;106718;106719;106720;106721;106722;106723;106724;106725;106726;106727;106728;106729;106730;106731;106732;106733;106734;106735;106736 106722 24 IDEWMMNYLTEFDGKPFQSVSK Unmodified 2664.224 0.22401122 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.148 52.708 3 1.5151E-16 26083 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.92 156.88 2047400000 205500000 177990000 185900000 0 0 0 128290000 138730000 129570000 0 0 0 177400000 167110000 150220000 0 0 0 215990000 183930000 186730000 0 0 0 9319 295 9088 173405;173406;173407;173408;173409;173410;173411;173412;173413;173414;173415;173416 106737;106738;106739;106740;106741;106742;106743;106744;106745 106738 9 IDGASPMR Unmodified 845.40654 0.40653711 1063 P10906 ugpE sn-glycerol-3-phosphate transport system permease protein UgpE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 13.2 13.648 2 0.0023384 4089 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.33 70.024 81895000 0 0 0 0 0 0 0 0 0 0 5663000 4493300 0 0 0 0 0 0 0 34060000 28843000 5420200 3415900 0 9320 1063 9089 173417;173418;173419;173420;173421;173422;173423 106746;106747;106748 106747 3 IDGEVCDLSDPPKLELQK Unmodified 2055.0194 0.019421398 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 34.597 33.192 2;3 4.0218E-05 15847 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.606 77.578 371480000 37409000 30603000 33531000 0 1656200 1272000 27393000 24128000 28544000 6120100 5630500 5184000 0 1601600 1886100 33750000 24678000 27897000 23959000 21822000 25033000 2440000 2989600 3954200 9321 222 9090 173424;173425;173426;173427;173428;173429;173430;173431;173432;173433;173434;173435;173436;173437;173438;173439;173440;173441;173442;173443;173444;173445;173446;173447 106749;106750;106751;106752;106753;106754;106755;106756 106754 8 IDGFGPMK Unmodified 863.42112 0.42112454 945 P0AFJ1 phnA Protein PhnA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.49 25.286 2 0.0086779 11583 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 81.297 49.993 2097900000 241890000 195940000 208370000 646700 0 823620 198820000 193430000 196940000 25878000 25021000 18292000 145060000 130710000 98522000 2922800 0 1549200 130710000 128080000 135710000 5747000 6677700 6143300 9322 945 9091 173448;173449;173450;173451;173452;173453;173454;173455;173456;173457;173458;173459;173460;173461;173462;173463;173464;173465;173466;173467;173468;173469 106757;106758;106759;106760;106761;106762;106763;106764;106765;106766;106767;106768 106758 12 IDGIGLYR Unmodified 905.49707 0.49706667 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.073 28.572 2 0.0031662 10898 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 94.407 59.302 73329000 18321000 0 12363000 1256700 0 865090 0 0 8522600 3382600 2216700 0 0 0 0 0 0 1231600 10393000 11648000 0 0 1576500 1552000 9323 1459 9092 173470;173471;173472;173473;173474;173475;173476;173477;173478;173479;173480;173481 106769 106769 1 IDGLGIK Unmodified 714.42759 0.42759012 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.243 22.054 2 0.0060552 8809 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.071 35.074 373590000 28042000 24058000 25458000 0 0 0 34346000 38609000 33006000 0 0 0 33795000 27141000 33487000 0 0 0 28279000 33984000 33386000 0 0 0 9324 1456 9093 173482;173483;173484;173485;173486;173487;173488;173489;173490;173491;173492;173493 106770;106771;106772;106773;106774;106775;106776;106777;106778;106779;106780;106781 106779 12 IDGNYGIILEVNCQTDFVAK Unmodified 2268.1096 0.10963339 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 4 5 5 4 4 3 5 52.76 51.43 2;3 3.8549E-30 25306 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 218.68 211.95 634110000 33489000 32995000 26827000 0 0 0 53689000 48846000 57083000 0 0 0 66953000 44066000 49969000 0 0 0 78473000 55466000 86251000 0 0 0 9325 267 9094 173494;173495;173496;173497;173498;173499;173500;173501;173502;173503;173504;173505;173506;173507;173508;173509;173510;173511;173512;173513;173514;173515;173516;173517;173518;173519;173520;173521;173522;173523;173524;173525;173526;173527;173528;173529;173530;173531;173532;173533;173534;173535;173536;173537 106782;106783;106784;106785;106786;106787;106788;106789;106790;106791;106792;106793;106794;106795;106796;106797;106798;106799;106800;106801;106802;106803;106804;106805;106806;106807;106808;106809;106810;106811;106812;106813;106814;106815 106800 32 IDGQWVTHQWLK Unmodified 1509.7728 0.7728476 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 1 1 2 2 2 1 2 2 2 36.09 34.509 2;3 2.6224E-08 16544 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 181.68 164.45 5650300000 686390000 756630000 666600000 1498700 2452300 411140 415230000 385000000 364170000 1308400 0 1097000 387670000 351790000 343340000 0 834290 0 402490000 446650000 436790000 0 0 0 9326 512 9095 173538;173539;173540;173541;173542;173543;173544;173545;173546;173547;173548;173549;173550;173551;173552;173553;173554;173555;173556;173557;173558;173559;173560;173561;173562;173563;173564;173565;173566;173567;173568 106816;106817;106818;106819;106820;106821;106822;106823;106824;106825;106826;106827;106828;106829;106830;106831;106832;106833;106834;106835 106823 20 IDGTDVGAPK Unmodified 971.49238 0.49237523 1987 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 4 5 4 1 1 1 1 1 14.571 15.455 2 0.0037036 4035 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 71.501 56.062 109230000 0 0 0 23423000 38881000 27170000 9803000 0 3166200 0 0 642580 4269400 0 0 0 0 0 0 0 0 0 0 1876100 + 9327 1987 9096 173569;173570;173571;173572;173573;173574;173575;173576;173577;173578;173579;173580;173581;173582;173583;173584;173585;173586 106836;106837;106838;106839 106838 4 IDGVFGDTAVVTEWLK Unmodified 1748.8985 0.89850163 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS 1 54.884 53.382 2 1.0742E-10 26264 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.36 134.7 219220000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 219220000 0 0 0 0 9328 1349 9097 173587 106840 106840 1 IDHCYNISDIVCFPSR Unmodified 1994.8979 0.89786647 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.814 41.07 3 1.8733E-11 20340 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.81 129.52 162290000 0 2357900 0 1564100 1449200 1658600 13098000 15038000 14336000 7776600 6610900 7059900 8003200 0 0 3391600 4453100 0 20136000 20436000 18116000 5629700 4358800 6819600 9329 1494 9098 173588;173589;173590;173591;173592;173593;173594;173595;173596;173597;173598;173599;173600;173601;173602;173603;173604;173605;173606 106841;106842;106843;106844;106845;106846;106847;106848;106849 106845 6 IDHVMSMLR Unmodified 1100.5471 0.54707011 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.911 23.037 3 0.089556 9550 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 33.961 25.74 82434000 4982200 7949600 7239600 0 336340 0 0 6624700 4446700 1993400 1723500 1882800 5205300 4716900 4631300 0 1871000 0 8581300 8583200 10442000 1224200 0 0 9330 1116 9099 173607;173608;173609;173610;173611;173612;173613;173614;173615;173616;173617;173618;173619;173620;173621;173622;173623 106850 106850 1 IDHYLGK Unmodified 844.4443 0.44430282 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.976 12.808 2 0.0066942 3617 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.407 77.48 855840000 60439000 62192000 69790000 0 0 0 78560000 81638000 83364000 0 0 0 61519000 67898000 66299000 0 0 0 79373000 79207000 65560000 0 0 0 9331 702 9100 173624;173625;173626;173627;173628;173629;173630;173631;173632;173633;173634;173635 106851;106852;106853;106854;106855;106856;106857 106855 4 IDIGDLQNLQPGATVPVTLTR Unmodified 2220.2114 0.21139634 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.671 51.383 2;3 3.5245E-53 25040 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 268.59 257.32 2161600000 573620000 547480000 445510000 0 0 0 137400000 108790000 107260000 0 0 0 25900000 25005000 20641000 0 0 0 61562000 54803000 53623000 0 0 0 9332 1254 9101 173636;173637;173638;173639;173640;173641;173642;173643;173644;173645;173646;173647;173648;173649;173650;173651;173652;173653;173654;173655;173656;173657;173658;173659 106858;106859;106860;106861;106862;106863;106864;106865;106866;106867;106868;106869;106870;106871;106872 106864 14 IDILIGTHK Unmodified 1008.5968 0.59678072 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 1 1 2 1 2 2 2 29.68 28.455 2 0.0059988 14741 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.485 20.698 277230000 43831000 40997000 35962000 0 0 0 27044000 29650000 17150000 0 0 0 8014000 11123000 8511100 0 0 0 17216000 15337000 22397000 0 0 0 9333 1355 9102 173660;173661;173662;173663;173664;173665;173666;173667;173668;173669;173670;173671;173672;173673;173674;173675;173676;173677;173678;173679;173680 106873;106874;106875;106876 106874 3 IDILLEQPAYAGLPIADALNAELDR Unmodified 2693.4276 0.42759671 966 P0AFW4 rnk Regulator of nucleoside diphosphate kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 55.696 54.223 2;3 4.5797E-07 25967 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 74.905 64.922 507120000 14623000 15551000 18807000 0 0 0 38449000 30513000 36299000 0 0 0 65406000 57567000 63039000 0 0 0 63753000 53283000 49831000 0 0 0 9334 966 9103 173681;173682;173683;173684;173685;173686;173687;173688;173689;173690;173691;173692;173693;173694;173695;173696;173697;173698;173699;173700;173701;173702;173703;173704 106877;106878;106879 106877 3 IDILVNNAGVCR Unmodified 1342.7027 0.70271913 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.929 31.452 2 6.8854E-12 14987 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 221.83 211.88 545540000 38897000 42972000 44730000 778010 0 0 57891000 46422000 46839000 0 0 0 42599000 39570000 39474000 0 0 0 49178000 47243000 47683000 0 0 1261300 9335 1471 9104 173705;173706;173707;173708;173709;173710;173711;173712;173713;173714;173715;173716;173717;173718 106880;106881;106882;106883;106884;106885;106886 106883 6 IDKAPQNVDSALTQGPEMAR Unmodified 2140.0583 0.05826652 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 27.014 25.933 3 4.7562E-05 11831 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.277 71.917 108230000 14953000 22251000 18938000 0 0 0 0 8243000 7695100 0 0 0 5756700 5393200 7038900 0 0 0 0 11641000 6323100 0 0 0 9336 1006 9105 173719;173720;173721;173722;173723;173724;173725;173726;173727;173728 106887;106888;106889 106887 3 IDKEGQHAFVNFR Unmodified 1559.7845 0.78447492 470 P0A8X2 yceI Protein YceI yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 17.64 18.302 3;4 4.4319E-06 6676 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.02 108.19 312050000 42874000 36782000 28824000 0 0 0 20327000 26928000 24532000 0 0 0 14146000 11325000 14756000 0 0 0 26632000 30799000 33256000 0 869270 0 9337 470 9106 173729;173730;173731;173732;173733;173734;173735;173736;173737;173738;173739;173740;173741;173742;173743;173744;173745;173746;173747;173748;173749;173750;173751;173752;173753 106890;106891;106892;106893;106894;106895;106896;106897 106897 8 IDKEGVFHTEWLD Unmodified 1587.7569 0.75692277 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 3 2 2 1 1 2 3 3 1 1 2 3 3 1 1 3 3 2 38.568 36.931 2;3 4.0047E-12 18294 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 189.66 178.57 7821500000 435300000 370640000 381330000 2323800 1462100 1398200 748470000 709930000 711250000 2079800 0 1463500 594950000 608970000 533190000 0 1632100 1568300 963390000 897060000 855110000 0 0 0 9338 24 9107 173754;173755;173756;173757;173758;173759;173760;173761;173762;173763;173764;173765;173766;173767;173768;173769;173770;173771;173772;173773;173774;173775;173776;173777;173778;173779;173780;173781;173782;173783;173784;173785;173786;173787;173788;173789;173790;173791;173792 106898;106899;106900;106901;106902;106903;106904;106905;106906;106907;106908;106909;106910;106911;106912;106913;106914;106915;106916;106917 106899 20 IDKPEADPDR Unmodified 1154.5568 0.5567664 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 11.216 11.89 2;3 0.00042295 2997 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.27 118.68 1126000000 167280000 181740000 172030000 2058100 3601800 2865500 55282000 54418000 51796000 19095000 16238000 7099200 67903000 61492000 67656000 8199900 10458000 14639000 54328000 48270000 54261000 1757400 0 3530500 9339 297 9108 173793;173794;173795;173796;173797;173798;173799;173800;173801;173802;173803;173804;173805;173806;173807;173808;173809;173810;173811;173812;173813;173814;173815;173816;173817;173818;173819;173820;173821;173822;173823;173824;173825;173826;173827;173828;173829;173830 106918;106919;106920;106921;106922;106923;106924;106925;106926;106927;106928;106929;106930 106926 13 IDKSVMAGVIIR Unmodified 1300.7537 0.75369207 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 30.388 28.685 3 0.0060413 11276 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 60.49 60.49 24313000 0 0 0 1360400 1772800 1472800 0 0 0 3506200 3749700 3060800 0 0 0 0 1042500 0 0 0 0 2274500 2686500 3386400 9340 643 9109 173831;173832;173833;173834;173835;173836;173837;173838;173839;173840 106931;106932 106931 2 IDLALLPFSDALSR Unmodified 1529.8453 0.84534384 1016 P0AGG0 thiL Thiamine-monophosphate kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.152 53.677 2 5.2033E-17 26304 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 163.78 128.27 275250000 31097000 34109000 33112000 0 0 0 19582000 20003000 17351000 0 0 0 20236000 19644000 21578000 0 0 0 27146000 31397000 0 0 0 0 9341 1016 9110 173841;173842;173843;173844;173845;173846;173847;173848;173849;173850;173851;173852 106933;106934;106935;106936;106937;106938;106939;106940;106941 106937 9 IDLAWSR Unmodified 859.4552 0.45520186 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.949 30.757 2 7.2733E-05 14358 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 175.75 130.78 1263100000 115080000 122030000 102350000 0 1891900 0 128870000 113370000 112470000 3377900 0 0 72600000 76333000 69593000 1792200 1478100 1131700 124350000 112730000 103690000 0 0 0 9342 1503 9111 173853;173854;173855;173856;173857;173858;173859;173860;173861;173862;173863;173864;173865;173866;173867;173868;173869 106942;106943;106944;106945;106946;106947;106948;106949;106950;106951;106952 106949 11 IDLGLGR Unmodified 742.43374 0.43373813 812 P0ADV5 yhbW Uncharacterized protein YhbW yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.082 26.935 2 0.002549 12655 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.69 36.855 466450000 62498000 57574000 40453000 0 0 0 39357000 45960000 34684000 0 0 0 22712000 22846000 22263000 0 0 0 38663000 42640000 36797000 0 0 0 9343 812 9112 173870;173871;173872;173873;173874;173875;173876;173877;173878;173879;173880;173881 106953;106954;106955;106956;106957;106958;106959;106960;106961;106962 106953 10 IDLPAADPER Unmodified 1095.556 0.55603811 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.463 25.392 2 0.00036507 8186 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 108.98 107 967170000 88915000 82667000 75153000 0 2418300 2671900 52541000 50468000 56015000 7210000 6017000 7219200 60418000 54048000 52186000 24053000 15876000 17536000 78562000 71774000 75788000 27006000 27384000 31241000 9344 1633 9113 173882;173883;173884;173885;173886;173887;173888;173889;173890;173891;173892;173893;173894;173895;173896;173897;173898;173899;173900;173901;173902;173903;173904 106963;106964;106965;106966;106967;106968;106969;106970;106971;106972;106973;106974;106975;106976;106977 106965 10 IDLPAADPERVAEEIEDIVGIDATDAVR Unmodified 2991.5037 0.50367478 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 55.954 56.009 3 0.014227 21115 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 56.854 54.404 110280000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28676000 40295000 41313000 0 0 0 0 0 0 9345 1633 9114 173905;173906;173907 106978 106978 0 IDLQPGEVIK Unmodified 1110.6285 0.62847478 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.703 30.304 2 0.00012278 14100 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.38 119.17 1832900000 136900000 124570000 122290000 583140 0 408380 138640000 126670000 123700000 0 0 0 118800000 117030000 115200000 0 0 0 234310000 235650000 237350000 0 0 797600 9346 1169 9115 173908;173909;173910;173911;173912;173913;173914;173915;173916;173917;173918;173919;173920;173921;173922 106979;106980;106981;106982;106983;106984;106985;106986;106987;106988;106989;106990 106987 12 IDLTEWETNPESTR Unmodified 1689.7846 0.78459408 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.545 38.879 2 1.2557E-14 18817 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 193.85 177.21 854870000 60939000 56574000 46333000 674070 0 0 60521000 51897000 53795000 0 0 5161700 54977000 44195000 52625000 0 0 1431900 81479000 0 68868000 79395000 70224000 65781000 9347 1433 9116 173923;173924;173925;173926;173927;173928;173929;173930;173931;173932;173933;173934;173935;173936;173937;173938;173939 106991;106992;106993;106994;106995;106996;106997 106996 7 IDLTIVGPEAPLVK Unmodified 1463.8599 0.85993128 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 2 1 1 1 1 48.678 47.37 2;3 1.2363E-05 23231 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.412 87.778 580300000 153560000 160720000 136470000 0 0 768190 13540000 10671000 7494200 0 0 0 12692000 14786000 11404000 0 0 0 21996000 18553000 17646000 0 0 0 9348 1112 9117 173940;173941;173942;173943;173944;173945;173946;173947;173948;173949;173950;173951;173952;173953;173954;173955;173956 106998;106999;107000;107001;107002;107003;107004;107005;107006 107000 7 IDLVDGK Unmodified 758.41742 0.41741937 838 P0AE72 mazE Antitoxin MazE yes yes 0 0 0 By MS/MS By matching 1 1 19.402 20.054 2 0.0051746 7468 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 100.74 64.186 7116900 0 0 0 0 0 0 0 0 0 0 0 0 4511400 2605400 0 0 0 0 0 0 0 0 0 0 9349 838 9118 173957;173958 107007 107007 1 IDLYQCVVPTTWNASPR Unmodified 2018.9884 0.98839604 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 48.856 47.228 2 1.0425E-13 23404 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 191.06 186.15 60370000 0 0 0 0 0 0 19460000 16290000 16017000 0 0 3868200 0 0 0 0 0 0 0 0 0 0 4735400 0 9350 722 9119 173959;173960;173961;173962;173963 107008;107009;107010 107008 3 IDMASPFIVMR Unmodified 1278.6464 0.6464498 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.128 47.781 2 2.0609E-05 23142 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 135.71 130.39 561750000 53026000 51863000 43598000 0 0 0 42837000 50905000 41760000 0 0 0 41170000 41605000 40266000 0 0 0 49862000 51669000 53189000 0 0 0 9351 63 9120 173964;173965;173966;173967;173968;173969;173970;173971;173972;173973;173974;173975 107011;107012;107013;107014;107015;107016;107017 107017 6 IDMSEFMEK Unmodified 1128.4831 0.48313245 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.281 37.422 2 0.00017574 18062 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.69 89.724 1246800000 154430000 121010000 131580000 2259400 2581000 1780000 137620000 126020000 140910000 4609200 4569800 4228700 72978000 66562000 66185000 0 0 0 66231000 68671000 70297000 1244100 1233700 1745600 9352 1662 9121 173976;173977;173978;173979;173980;173981;173982;173983;173984;173985;173986;173987;173988;173989;173990;173991;173992;173993;173994;173995;173996 107018;107019;107020;107021;107022;107023;107024;107025;107026;107027;107028;107029;107030;107031;107032 107023 15 IDMVVDLWYAR Unmodified 1379.6908 0.69075746 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.565 52.126 2 0.00012807 24659 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.5 102.78 131680000 10073000 7790900 9599000 0 0 0 11229000 11771000 10730000 0 0 0 11630000 10423000 9962300 0 0 0 14382000 12878000 11214000 0 0 0 9353 1889 9122 173997;173998;173999;174000;174001;174002;174003;174004;174005;174006;174007;174008 107033;107034;107035 107034 3 IDNAASVIALQWLQLHHQALK Unmodified 2368.3015 0.30154876 1981 Q93K97 nudF ADP-ribose pyrophosphatase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 47.118 45.776 4 3.5053E-10 22745 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 112.74 112.55 227840000 23755000 21655000 23220000 0 0 0 0 28719000 17608000 0 0 0 21984000 17775000 23417000 0 0 0 0 22477000 27232000 0 0 0 9354 1981 9123 174009;174010;174011;174012;174013;174014;174015;174016;174017;174018 107036;107037;107038;107039;107040 107036 5 IDNATLAELDALR Unmodified 1413.7464 0.74635808 833 P0AE48 ytfP Gamma-glutamylcyclotransferase family protein YtfP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 44.165 42.693 2;3 1.3845E-17 21246 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 215.5 187.49 407130000 57330000 53260000 47858000 0 0 0 25152000 26612000 25563000 0 0 0 23202000 22632000 25057000 0 0 0 36939000 34891000 28631000 0 0 0 9355 833 9124 174019;174020;174021;174022;174023;174024;174025;174026;174027;174028;174029;174030;174031;174032;174033;174034;174035;174036;174037;174038;174039;174040 107041;107042;107043;107044;107045;107046;107047;107048;107049;107050;107051 107041 4 IDNAVVR Unmodified 785.43955 0.43955179 1212 P23827 eco Ecotin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.58 13.402 2 6.6643E-05 3894 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.72 80.487 2545000000 201300000 214990000 194920000 0 2269200 0 353900000 0 300530000 0 0 0 203760000 189390000 196020000 0 0 0 234900000 239390000 209760000 0 0 3884600 9356 1212 9125 174041;174042;174043;174044;174045;174046;174047;174048;174049;174050;174051;174052;174053;174054 107052;107053;107054;107055;107056;107057;107058;107059;107060;107061;107062;107063 107053 8 IDNSHGGR Unmodified 854.39948 0.39947789 1204 P23173 tnaB Low affinity tryptophan permease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 6.1603 6.8929 2 0.0037473 1170 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.55 83.163 9843500 2957000 3719400 3167100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9357 1204 9126 174055;174056;174057 107064;107065;107066 107064 3 IDNVLVCPNSNCISHAEPVSSSFAVR Unmodified 2871.3644 0.3643613 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 2 1 1 1 1 1 1 1 1 1 1 37.936 36.67 3 3.3412E-22 17821 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.92 154.27 362100000 106620000 94922000 112430000 8448500 8050800 8026200 0 0 0 0 0 0 0 0 0 1339300 1200700 1294100 0 7980400 9057900 0 1436100 1296700 9358 339 9127 174058;174059;174060;174061;174062;174063;174064;174065;174066;174067;174068;174069;174070;174071 107067;107068;107069;107070;107071;107072 107070 6 IDNYEVVGK Unmodified 1035.5237 0.52367535 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 2 1 1 1 2 2 2 1 1 1 1 18.534 19.181 2 0.00048226 7290 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.11 75.751 4385200000 1892300000 1912800000 0 7016000 7517300 6192200 0 0 0 0 0 0 52241000 49167000 43330000 1022400 0 0 143530000 139970000 130080000 0 0 0 9359 339 9128 174072;174073;174074;174075;174076;174077;174078;174079;174080;174081;174082;174083;174084;174085;174086;174087 107073;107074;107075;107076;107077;107078;107079 107073 7 IDPDLIGR Unmodified 897.49198 0.4919813 1858 P76418 yegU Uncharacterized protein YegU yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.325 26.178 2 0.0030532 11829 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 95.352 72.333 88753000 8688800 7756300 6776700 0 0 0 7311900 8641200 7896400 0 0 0 5458600 5624900 6535800 0 0 0 8752500 7331500 7978400 0 0 0 9360 1858 9129 174088;174089;174090;174091;174092;174093;174094;174095;174096;174097;174098;174099 107080;107081;107082;107083;107084;107085;107086 107083 3 IDPHAEEFLSNEQVER Unmodified 1911.8963 0.8962698 579 P0AA89 dosC Diguanylate cyclase DosC yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 29.799 28.657 3 0.0061557 13291 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 50.653 47.418 41177000 14598000 13353000 11772000 0 0 0 0 0 0 0 0 0 1453200 0 0 0 0 0 0 0 0 0 0 0 9361 579 9130 174100;174101;174102;174103 107087 107087 1 IDPILVPDPAR Unmodified 1204.6816 0.68157298 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 39.332 37 2 0.00012618 18452 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.86 110.07 38524000 0 0 0 0 0 0 11696000 12223000 13109000 659590 0 836250 0 0 0 0 0 0 0 0 0 0 0 0 9362 1145 9131 174104;174105;174106;174107;174108 107088;107089;107090 107088 3 IDPNGENDRYPLQK Unmodified 1657.806 0.80599822 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 17.008 17.518 2;3 1.3431E-06 6336 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.64 119.21 675820000 26535000 28753000 15085000 9233000 7185100 4661600 43756000 48128000 49531000 37668000 33241000 17099000 34627000 29508000 31822000 9667200 7497200 6508200 70191000 68021000 61681000 17292000 12542000 5584500 9363 927 9132 174109;174110;174111;174112;174113;174114;174115;174116;174117;174118;174119;174120;174121;174122;174123;174124;174125;174126;174127;174128;174129;174130;174131;174132;174133;174134;174135;174136;174137;174138;174139;174140;174141;174142;174143;174144;174145;174146;174147;174148;174149;174150;174151;174152 107091;107092;107093;107094;107095;107096;107097;107098;107099;107100;107101;107102;107103;107104;107105;107106;107107;107108;107109;107110;107111;107112 107102 22 IDPVGACVGMR Oxidation (M) 1189.5584 0.55836308 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 4 3 3 1 1 2 3 3 1 3 4 4 22.314 21.959 2 0.00079971 6125 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 86.67 73.633 344090000 0 0 2887500 0 0 0 0 3650700 2800800 17664000 24095000 19230000 4165700 0 2817800 44019000 34589000 35622000 0 2342400 0 55957000 49494000 44758000 9364 935 9133 174153;174154;174155;174156;174157;174158;174159;174160;174161;174162;174163;174164;174165;174166;174167;174168;174169;174170;174171;174172;174173;174174;174175;174176;174177;174178;174179;174180;174181;174182;174183;174184;174185;174186;174187 107113;107114;107115;107116;107117;107118;107119;107120;107121;107122;107123;107124;107125;107126;107127;107128;107129;107130;107131 107113 420 19 IDPVGACVGMR Unmodified 1173.5634 0.56344845 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 1 2 2 2 26.43 25.528 2;3 4.9237E-06 9478 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 152.63 145.06 8847400000 0 188370000 184630000 0 0 0 0 0 0 327110000 448970000 451470000 0 151050000 128240000 1331800000 869990000 939880000 0 177550000 0 1170500000 1278100000 1199900000 9365 935 9133 174188;174189;174190;174191;174192;174193;174194;174195;174196;174197;174198;174199;174200;174201;174202;174203;174204;174205;174206;174207 107132;107133;107134;107135;107136;107137;107138;107139;107140;107141;107142;107143;107144;107145 107136 13 IDQLSSDVQTLNAK Unmodified 1530.789 0.78895118 1740 P69776 lpp Major outer membrane lipoprotein Lpp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 1 2 2 2 1 1 1 1 1 1 1 2 1 2 2 2 28.481 27.074 2;3 1.1471E-15 9768 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 241.92 231.17 1266000000 30175000 28447000 27087000 55850000 53586000 55427000 38052000 37167000 35268000 126690000 139480000 140730000 30279000 31427000 29072000 29373000 16189000 16638000 43207000 53017000 43846000 66074000 68647000 70304000 9366 1740 9134 174208;174209;174210;174211;174212;174213;174214;174215;174216;174217;174218;174219;174220;174221;174222;174223;174224;174225;174226;174227;174228;174229;174230;174231;174232;174233;174234;174235;174236;174237;174238;174239;174240;174241;174242 107146;107147;107148;107149;107150;107151;107152;107153;107154;107155;107156;107157;107158;107159;107160;107161;107162;107163;107164;107165;107166;107167;107168;107169;107170;107171;107172;107173;107174;107175 107159 30 IDQMEAEAESHSFGK Unmodified 1677.7305 0.73045002 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.933 21.79 3 3.3113E-06 8644 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 98.676 98.196 302580000 32361000 29497000 25655000 2262100 2610000 2409500 27994000 23943000 28669000 3628700 3131600 3667900 20012000 19278000 13485000 0 1159800 1677400 20620000 19914000 18513000 2087900 0 0 9367 956 9135 174243;174244;174245;174246;174247;174248;174249;174250;174251;174252;174253;174254;174255;174256;174257;174258;174259;174260;174261;174262;174263 107176;107177;107178;107179;107180;107181;107182;107183;107184;107185;107186;107187;107188 107186 13 IDQQYDVFSDIR Unmodified 1497.71 0.70997257 1150 P18335 argD Acetylornithine/succinyldiaminopimelate aminotransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 41.059 39.398 2 5.5594E-07 19092 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.24 143.41 140920000 19120000 17932000 18571000 0 0 0 11927000 11436000 9423700 0 0 0 6547800 5649200 6117200 0 0 0 11128000 13847000 9222800 0 0 0 9368 1150 9136 174264;174265;174266;174267;174268;174269;174270;174271;174272;174273;174274;174275;174276 107189;107190;107191;107192;107193;107194;107195 107192 6 IDQTEEILGVTR Unmodified 1372.7198 0.71980898 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 0 By MS/MS By MS/MS 1 1 33.805 32.55 2 0.042677 15561 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.359 30.793 7661000 4545000 0 3116000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9369 1878 9137 174277;174278 107196;107197 107196 0 IDQVVESESNLK Unmodified 1359.6882 0.6881745 1177 P21362 yciF Protein YciF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 20.149 20.485 2 1.1699E-11 7892 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 185.18 176.96 871280000 274420000 291790000 214420000 8783300 8148200 9107800 14006000 17092000 19268000 0 0 0 0 0 0 0 0 0 14243000 0 0 0 0 0 9370 1177 9138 174279;174280;174281;174282;174283;174284;174285;174286;174287;174288 107198;107199;107200;107201;107202;107203;107204 107204 7 IDRNILNELQK Unmodified 1354.7569 0.75686319 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1 28.016 27.637 2;3 0.00028784 9359 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 86.911 81.408 157590000 0 0 0 0 0 518710 0 0 0 0 0 0 0 0 2084200 55000000 44434000 52434000 0 0 3123900 0 0 0 9371 733 9139 174289;174290;174291;174292;174293;174294;174295;174296;174297 107205;107206;107207;107208;107209 107205 5 IDRPEEYADIATK Unmodified 1519.7518 0.75183739 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 1 2 2 2 1 22.179 22.145 2;3 1.6515E-23 9381 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 229.97 210.2 2750700000 277170000 254210000 269060000 1332100 1837900 1187100 269710000 259550000 239840000 1785900 0 0 216320000 204070000 175240000 0 810210 0 202760000 178500000 196020000 1355800 0 0 9372 421 9140 174298;174299;174300;174301;174302;174303;174304;174305;174306;174307;174308;174309;174310;174311;174312;174313;174314;174315;174316;174317;174318;174319;174320;174321;174322;174323;174324;174325;174326;174327 107210;107211;107212;107213;107214;107215;107216;107217;107218;107219;107220;107221;107222;107223;107224;107225;107226;107227;107228;107229;107230;107231;107232;107233 107211 24 IDRTPHWLIK Unmodified 1277.7244 0.72444085 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 22.289 21.785 2;3 0.0054103 7038 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 54.982 42.192 61256000 0 0 0 4379900 3410500 4329000 0 0 0 4318300 3656900 5160100 0 0 0 0 0 0 0 0 0 15209000 9949900 10842000 9373 215 9141 174328;174329;174330;174331;174332;174333;174334;174335;174336;174337;174338;174339;174340;174341 107234;107235;107236;107237;107238;107239;107240 107237 7 IDSLTAVSR Unmodified 960.52401 0.52400971 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.888 20.143 2 1.2194E-06 7524 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 178.83 169.31 2775500000 188580000 187630000 183670000 8329100 7548300 7798800 233920000 214960000 196980000 8308100 6821900 8668800 226170000 226360000 202230000 5510500 5191600 4288500 262340000 253030000 289900000 14371000 16635000 16228000 9374 651 9142 174342;174343;174344;174345;174346;174347;174348;174349;174350;174351;174352;174353;174354;174355;174356;174357;174358;174359;174360;174361;174362;174363;174364;174365 107241;107242;107243;107244;107245;107246;107247;107248 107246 8 IDSMYNLR Unmodified 1010.4855 0.48551571 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 25.707 24.198 2 0.00084992 11089 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 120.52 101.79 56664000 0 0 0 0 0 0 17922000 20796000 17946000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9375 1845 9143 174366;174367;174368 107249;107250 107249 2 IDSMYNLRMYSR Unmodified 1547.7225 0.72246829 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.821 11.636 4 0.16505 2811 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 13.2 0.84026 528040000 31282000 25604000 25313000 0 0 0 61674000 59325000 63358000 0 0 0 40846000 37474000 34847000 0 0 0 58165000 51186000 38962000 0 0 0 9376 1845 9144 174369;174370;174371;174372;174373;174374;174375;174376;174377;174378;174379;174380 107251 107251 1 IDTATELTYYQNDGILHYVIR Unmodified 2497.2489 0.24890406 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 1 1 1 2 2 1 50.486 49.088 2;3;4 1.4665E-34 23874 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 275.85 265.07 1791500000 501850000 404660000 408460000 0 0 0 90127000 92286000 81895000 0 0 0 21018000 20165000 18966000 0 0 0 50650000 54040000 47434000 0 0 0 9377 1254 9145 174381;174382;174383;174384;174385;174386;174387;174388;174389;174390;174391;174392;174393;174394;174395;174396;174397;174398;174399;174400;174401;174402;174403 107252;107253;107254;107255;107256;107257;107258;107259;107260;107261;107262 107262 4 IDTGAEK Unmodified 732.36538 0.3653838 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 2 1 1 1 2 1 2 1 2 8.4962 9.2834 2 0.0059278 2366 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 97.602 60.573 808510000 110320000 112050000 76868000 0 112170 0 50487000 41785000 44116000 0 0 0 55519000 48840000 39798000 0 12061000 0 63486000 68444000 84635000 0 0 0 9378 1437 9146 174404;174405;174406;174407;174408;174409;174410;174411;174412;174413;174414;174415;174416;174417;174418;174419;174420;174421 107263;107264;107265;107266;107267;107268;107269;107270;107271;107272;107273 107269 11 IDTILVK Unmodified 800.50076 0.50075507 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.289 24.118 2 0.0010429 11003 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.07 71.04 136660000 3844200 0 3151200 0 0 0 17310000 18694000 22124000 7959500 8793000 7822900 8356600 6512600 7073900 0 0 0 7544400 8152500 9316700 0 0 0 9379 1476 9147 174422;174423;174424;174425;174426;174427;174428;174429;174430;174431;174432;174433;174434;174435 107274;107275;107276;107277;107278;107279;107280;107281 107275 8 IDTTLPLTDIHR Unmodified 1393.7565 0.75652884 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 32.064 30.925 3 0.1351 14431 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 24.935 17.733 15576000 5070900 5234600 5270100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9380 1196 9148 174436;174437;174438 107282 107282 0 IDVAEELDR Unmodified 1058.5244 0.52440364 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 28.432 27.269 2 6.4995E-05 12601 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.16 55.606 401450000 33216000 26627000 0 0 0 0 37216000 45263000 49023000 0 0 0 31717000 28709000 31605000 0 944420 0 39031000 39348000 38752000 0 0 0 9381 1215 9149 174439;174440;174441;174442;174443;174444;174445;174446;174447;174448;174449;174450;174451 107283;107284;107285;107286;107287;107288;107289;107290;107291 107287 6 IDVAEELDRLEAHVK Unmodified 1735.9105 0.9104633 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 1 1 3 3 3 3 2 3 3 3 3 1 40.427 38.746 2;3;4 1.5167E-08 18899 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.02 123.33 1613500000 128150000 116550000 113320000 551430 719630 658170 160610000 136500000 153860000 0 0 0 98211000 99906000 93797000 0 0 0 169600000 155940000 178990000 0 0 6094100 9382 1215 9150 174452;174453;174454;174455;174456;174457;174458;174459;174460;174461;174462;174463;174464;174465;174466;174467;174468;174469;174470;174471;174472;174473;174474;174475;174476;174477;174478;174479;174480;174481;174482;174483;174484;174485;174486;174487;174488;174489;174490 107292;107293;107294;107295;107296;107297;107298;107299;107300;107301;107302;107303;107304;107305;107306;107307;107308;107309;107310;107311;107312;107313;107314 107298 23 IDVIVQALAGAK Unmodified 1196.7129 0.71287311 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.785 41.193 2 1.94E-06 16387 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 145.17 123.71 829680000 27537000 22500000 0 22065000 21947000 18574000 67133000 59566000 54460000 37956000 30400000 28328000 49582000 44995000 43253000 9044800 5531200 8062100 71008000 74174000 67647000 22187000 23184000 20550000 9383 1427 9151 174491;174492;174493;174494;174495;174496;174497;174498;174499;174500;174501;174502;174503;174504;174505;174506;174507;174508;174509;174510;174511;174512;174513 107315;107316;107317;107318;107319;107320;107321;107322;107323;107324;107325;107326;107327;107328;107329;107330;107331;107332;107333;107334;107335;107336 107320 18 IDVLDSDIPADTGVK Unmodified 1556.7934 0.79336785 1869 P76537 yfeY Uncharacterized protein YfeY yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 39.349 37.215 2 7.1669E-05 15005 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 99.671 93.288 17317000 0 0 0 244520 626320 526010 3582500 3050200 3389000 3572300 2325700 0 0 0 0 0 0 0 0 0 0 0 0 0 9384 1869 9152 174514;174515;174516;174517;174518;174519;174520;174521 107337 107337 1 IDVLIFFWDPLNAVPHDPDVK Unmodified 2449.2682 0.26818294 305 P0A731 mgsA Methylglyoxal synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 55.732 54.286 3 2.6351E-10 26955 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 118.52 114.86 950170000 66243000 69977000 80634000 1739200 2141700 0 119430000 62310000 77033000 0 0 0 77632000 88274000 61142000 0 0 0 95497000 90977000 57141000 0 0 0 9385 305 9153 174522;174523;174524;174525;174526;174527;174528;174529;174530;174531;174532;174533;174534;174535;174536 107338;107339;107340;107341;107342;107343;107344;107345;107346;107347 107340 10 IDVLVNNAGAMTK Unmodified 1344.7071 0.7071358 1422 P33368 yohF Uncharacterized oxidoreductase YohF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.353 28.882 2 1.0188E-08 13510 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.18 114.02 219430000 28895000 34815000 28929000 0 1669000 1792100 19123000 20554000 15578000 0 0 0 8427600 0 0 0 0 0 17384000 16298000 18833000 0 4539700 2594200 9386 1422 9154 174537;174538;174539;174540;174541;174542;174543;174544;174545;174546;174547;174548;174549;174550 107348;107349;107350;107351;107352;107353 107351 6 IDVPEFR Unmodified 874.45487 0.45486751 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.639 30.168 2 0.0046288 14058 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.02 64.199 74082000 13119000 10364000 10530000 1440000 1095800 1227200 5562800 4272300 4013900 1451800 0 0 1762800 2982100 2770400 0 0 0 4762100 3624200 5104900 0 0 0 9387 1937 9155 174551;174552;174553;174554;174555;174556;174557;174558;174559;174560;174561;174562;174563;174564;174565;174566;174567 107354;107355;107356;107357;107358;107359;107360 107359 5 IDVPQQTHDTLK Unmodified 1393.7201 0.72014333 795 P0ADP0 yigB Flavin mononucleotide phosphatase YigB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.583 17.34 2 2.2979E-06 6145 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 142.83 135.93 79150000 10088000 9491600 6951100 0 0 0 4121400 5481000 6501000 0 0 0 2868400 3860100 5063500 0 0 0 8375200 7430300 8918200 0 0 0 9388 795 9156 174568;174569;174570;174571;174572;174573;174574;174575;174576;174577;174578;174579 107361;107362 107362 2 IDVQGVSCHGSAPER Unmodified 1610.7471 0.74710314 1706 P65807 ygeY Uncharacterized protein YgeY yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 14.97 15.671 3 0.10064 5323 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 25.957 22.232 62762000 9891000 10855000 5782700 0 0 0 10436000 12725000 8503100 0 0 0 0 0 0 0 0 0 0 0 4568400 0 0 0 9389 1706 9157 174580;174581;174582;174583;174584;174585;174586 107363 107363 0 IDVQQVEK Unmodified 957.51311 0.51311067 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 15.961 16.807 2 6.534E-05 5613 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 139.68 62.905 244570000 31686000 31059000 25857000 0 0 0 0 0 0 0 0 0 0 33274000 30182000 0 0 0 50307000 42204000 0 0 0 0 9390 1649 9158 174587;174588;174589;174590;174591;174592;174593;174594;174595 107364;107365;107366;107367 107366 4 IDVVINQVTISDER Unmodified 1599.8468 0.84680041 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 38.853 37.222 2 0.00032006 18243 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.55 89.09 69384000 9686100 5571600 6579000 0 0 0 7183200 0 6336400 0 0 0 6541300 6317900 5144300 0 0 0 4812300 5088300 6123100 0 0 0 9391 874 9159 174596;174597;174598;174599;174600;174601;174602;174603;174604;174605;174606 107368;107369;107370 107370 0 IDVYFNTAICQHSGNCVR Unmodified 2152.9782 0.97824206 915 P0AF59 yjdI Uncharacterized protein YjdI yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 31.931 30.588 3 0.017719 14274 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 46.621 45.383 116980000 7769300 9837600 10043000 0 0 0 19690000 21868000 17883000 0 0 0 7567400 4206300 6375000 0 0 0 5556000 0 6190200 0 0 0 9392 915 9160 174607;174608;174609;174610;174611;174612;174613;174614;174615;174616;174617 107371;107372;107373;107374 107372 0 IDWQEGR Unmodified 902.42463 0.42463001 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.489 20.002 2 0.00066144 7694 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 148.21 125.17 1441200000 470350000 489250000 426340000 1110600 1525700 1140300 5246400 0 2642800 0 0 0 3966700 3689100 4926000 0 0 0 8816400 10870000 11275000 0 0 0 9393 1305 9161 174618;174619;174620;174621;174622;174623;174624;174625;174626;174627;174628;174629;174630;174631 107375;107376;107377 107375 3 IDWSLSAAQLER Unmodified 1387.7096 0.70957864 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.628 42.113 2 1.4819E-30 19678 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 250.96 225.02 591080000 47319000 50076000 49183000 0 0 0 53352000 55218000 55813000 0 0 0 49200000 39012000 35954000 0 0 0 53379000 54729000 47847000 0 0 0 9394 1224 9162 174632;174633;174634;174635;174636;174637;174638;174639;174640;174641;174642;174643 107378;107379;107380;107381;107382;107383;107384;107385;107386;107387;107388;107389 107388 12 IDYNEIDDNR Unmodified 1265.5524 0.5524093 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 22.533 21.878 2 3.0102E-09 9295 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 196.99 185.15 218590000 0 0 0 0 0 0 35995000 38309000 35718000 0 1133700 0 22501000 19680000 25358000 0 0 0 15394000 11420000 13075000 0 0 0 9395 506 9163 174644;174645;174646;174647;174648;174649;174650;174651;174652;174653 107390;107391;107392;107393;107394;107395;107396;107397 107394 8 IDYNEIDDNRVTAEEVDILLR Unmodified 2504.2395 0.23946159 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.559 49.102 3 8.7265E-22 24259 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 167.22 163.69 416820000 3911000 0 0 0 0 0 109710000 56842000 35448000 14889000 10560000 10828000 63367000 0 3642300 0 0 0 33102000 29429000 34187000 3441700 4183600 3278200 9396 506 9164 174654;174655;174656;174657;174658;174659;174660;174661;174662;174663;174664;174665;174666;174667;174668 107398;107399;107400;107401;107402;107403 107402 6 IDYQALPEHEK Unmodified 1341.6565 0.65648044 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 2 2 2 2 2 1 17.867 18.49 2;3 0.00011386 6831 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 133.76 131.79 811340000 58734000 51963000 46248000 0 0 0 67598000 75430000 60574000 0 0 0 51632000 75408000 63279000 0 0 0 75637000 105720000 78158000 0 952200 0 9397 1759 9165 174669;174670;174671;174672;174673;174674;174675;174676;174677;174678;174679;174680;174681;174682;174683;174684;174685;174686 107404;107405;107406;107407;107408;107409;107410;107411;107412 107406 9 IEAALADK Unmodified 829.45453 0.45453316 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.309 15.004 2 0.0035358 4885 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.318 32.714 659400000 64270000 62930000 71641000 624720 0 695860 72081000 60780000 56066000 1654200 0 0 53880000 49777000 47503000 0 982750 947800 54992000 60575000 0 0 0 0 9398 385 9166 174687;174688;174689;174690;174691;174692;174693;174694;174695;174696;174697;174698;174699;174700;174701;174702;174703 107413;107414;107415;107416 107414 4 IEAALADKEAELMQF Unmodified 1677.8284 0.82837315 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.896 46.476 2 1.2397E-05 22670 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.898 93.175 480540000 49536000 41042000 0 0 0 0 42183000 46311000 42456000 0 0 0 44961000 37090000 30668000 0 0 0 49079000 48331000 48881000 0 0 0 9399 385 9167 174704;174705;174706;174707;174708;174709;174710;174711;174712;174713;174714;174715 107417;107418;107419;107420;107421;107422;107423;107424;107425;107426;107427;107428 107424 12 IEAGQPTVCSETCVGR Unmodified 1762.7978 0.79781808 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 1 1 1 2 2 2 1 1 1 2 1 2 2 2 20.501 20.719 2;3 1.1601E-23 8426 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 204.32 185.08 809960000 0 14695000 0 4027400 3368600 4565000 59097000 55613000 52479000 13952000 13430000 13837000 54567000 56847000 45246000 4525400 0 2434700 75015000 74743000 78580000 63547000 54635000 64755000 9400 1067 9168 174716;174717;174718;174719;174720;174721;174722;174723;174724;174725;174726;174727;174728;174729;174730;174731;174732;174733;174734;174735;174736;174737;174738;174739;174740;174741;174742;174743;174744;174745 107429;107430;107431;107432;107433;107434;107435;107436;107437;107438;107439;107440;107441;107442;107443;107444;107445;107446;107447;107448;107449;107450;107451;107452 107434 24 IEALAEDFSDK Unmodified 1236.5874 0.58739782 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.395 29.039 2 2.8618E-07 13754 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159.79 155.01 2838400000 211540000 210220000 181140000 0 0 0 276370000 257520000 265820000 0 0 0 214900000 186450000 198520000 0 0 0 274060000 279560000 282260000 0 0 0 9401 1137 9169 174746;174747;174748;174749;174750;174751;174752;174753;174754;174755;174756;174757 107453;107454;107455;107456;107457;107458;107459;107460;107461;107462;107463 107454 11 IEALAEDFSDKHHALFLGR Unmodified 2168.1015 0.10145196 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 33.687 32.247 4;5 4.8393E-07 15819 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 102.99 102.44 399620000 40544000 37232000 33264000 0 0 0 45296000 37327000 33511000 0 0 0 18834000 18725000 18037000 0 0 0 32301000 46468000 38076000 0 0 0 9402 1137 9170 174758;174759;174760;174761;174762;174763;174764;174765;174766;174767;174768;174769;174770;174771;174772;174773;174774;174775;174776;174777;174778;174779;174780;174781 107464;107465;107466;107467;107468 107465 5 IEALIQQLK Unmodified 1054.6386 0.63864553 1443 P36680 zapD Cell division protein ZapD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.636 31.183 2 0.00034993 14630 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.5 85.974 88224000 14962000 18204000 12101000 0 0 0 4998500 5971700 4119400 828930 0 0 3404400 2734200 3307300 0 0 0 5762100 5208100 6621700 0 0 0 9403 1443 9171 174782;174783;174784;174785;174786;174787;174788;174789;174790;174791;174792;174793;174794 107469;107470;107471;107472;107473;107474;107475;107476;107477 107473 1 IEALKPFGGIR Unmodified 1199.7026 0.70264277 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 28.612 27.348 2;3 2.3909E-05 13074 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143.01 126.81 3573900000 464730000 379570000 376070000 898130 0 1243200 321000000 345990000 323610000 0 0 0 203590000 182380000 193320000 0 0 0 255280000 257340000 268900000 0 0 0 9404 1170 9172 174795;174796;174797;174798;174799;174800;174801;174802;174803;174804;174805;174806;174807;174808;174809;174810;174811;174812;174813;174814;174815;174816;174817;174818;174819;174820 107478;107479;107480;107481;107482;107483;107484;107485;107486;107487;107488;107489;107490;107491;107492;107493;107494;107495 107479 16 IEAQLNDVIADLDAVR Unmodified 1753.921 0.92102798 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 53.197 51.763 2;3 1.603E-13 24295 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 194.24 169.9 346830000 36734000 31077000 29458000 0 0 0 27238000 25020000 26302000 0 0 3122800 27492000 25140000 27479000 0 0 0 24449000 25406000 28993000 5095500 0 3826200 9405 1256 9173 174821;174822;174823;174824;174825;174826;174827;174828;174829;174830;174831;174832;174833;174834;174835;174836;174837;174838;174839;174840;174841;174842;174843;174844;174845;174846;174847 107496;107497;107498;107499;107500;107501;107502;107503;107504;107505;107506;107507;107508;107509 107509 14 IEAQMHGGGHER Unmodified 1320.5993 0.59931669 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 1 2 1 1 1 8.1092 8.9783 2;3 2.0084E-08 2422 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 169.82 155.62 1220900000 151090000 159000000 142890000 0 0 625190 83131000 105600000 98800000 0 0 0 54767000 54265000 72219000 0 0 0 105140000 86065000 107320000 0 0 0 9406 228 9174 174848;174849;174850;174851;174852;174853;174854;174855;174856;174857;174858;174859;174860;174861;174862;174863;174864 107510;107511;107512;107513;107514;107515;107516;107517;107518;107519;107520;107521;107522;107523;107524 107520 15 IEAQMHGGGHER Oxidation (M) 1336.5942 0.59423131 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 1 0 By MS/MS By matching By matching 1 1 1 6.8413 7.5739 2 0.0017845 1459 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.006 64.08 12570000 4660900 4514200 3394500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9407 228 9174 174865;174866;174867 107525 107525 86 1 IEASLQDVGAQIR Unmodified 1398.7467 0.74669243 1369 P31473 ravA ATPase RavA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.827 31.373 2 5.4429E-09 15253 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.58 147.49 155220000 15547000 11906000 13691000 652880 0 451930 21058000 17842000 18061000 0 0 0 9999800 9218200 9321200 0 0 0 9805000 8591100 9076100 0 0 0 9408 1369 9175 174868;174869;174870;174871;174872;174873;174874;174875;174876;174877;174878;174879;174880;174881 107526;107527;107528;107529;107530;107531 107526 6 IEATEVDIASK Unmodified 1174.6081 0.60813326 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 22.657 21.869 2 0.00018846 7365 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 105.98 100.49 37095000 0 0 0 0 1730500 1517600 0 0 0 9916200 10632000 10322000 0 0 0 0 0 0 0 0 0 2976500 0 0 9409 1476 9176 174882;174883;174884;174885;174886;174887 107532;107533;107534 107533 3 IEAVADDLASLVLDAR Unmodified 1669.8887 0.88866522 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.949 53.508 2 1.7468E-13 26628 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 165.7 149.94 419730000 52829000 42320000 39945000 1238600 984850 0 37371000 33000000 0 0 0 0 34233000 33016000 32597000 0 0 0 36790000 37276000 38134000 0 0 0 9410 1085 9177 174888;174889;174890;174891;174892;174893;174894;174895;174896;174897;174898;174899;174900 107535 107535 1 IEAVTGEGAIATVHADSDR Unmodified 1910.9334 0.93338358 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.166 24.092 3 8.147E-10 10261 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 114.34 103.28 421010000 29341000 37467000 24893000 0 0 0 39503000 41953000 37848000 1706900 0 0 33719000 28454000 26814000 0 0 0 46992000 37335000 34986000 0 0 0 9411 59 9178 174901;174902;174903;174904;174905;174906;174907;174908;174909;174910;174911;174912;174913 107536;107537;107538;107539;107540;107541;107542;107543;107544;107545;107546 107545 11 IEDGINQVQCSVAEYPEAITYLLEQYDR Unmodified 3315.5605 0.56053773 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 55.689 55.745 3 3.6269E-41 21159 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 208.26 203.43 199680000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 69122000 62962000 67597000 0 0 0 0 0 0 9412 36 9179 174914;174915;174916 107547;107548;107549 107549 3 IEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR Unmodified 4099.9321 0.93206954 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 1 2 55.334 55.389 3;4 2.043E-133 20972 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 342.31 336.73 1441000000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 538220000 256470000 646340000 0 0 0 0 0 0 9413 36 9180 174917;174918;174919;174920;174921 107550;107551;107552;107553 107553 4 IEDLRPFK Unmodified 1016.5655 0.56548059 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.461 21.539 2 0.00085608 8658 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.77 102.87 280020000 25440000 28213000 22771000 967530 0 1164700 27548000 25020000 27609000 3085100 2291900 3103800 0 17473000 20019000 0 0 0 31080000 22097000 17169000 0 2667800 2304200 9414 1052 9181 174922;174923;174924;174925;174926;174927;174928;174929;174930;174931;174932;174933;174934;174935;174936;174937;174938;174939 107554;107555;107556;107557 107555 4 IEDNMESIGR Unmodified 1162.5288 0.52883709 1542 P39452 nrdE Ribonucleoside-diphosphate reductase 2 subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 20.53 21.066 2 0.038983 8297 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 57.55 48.336 53072000 6229400 5584400 5300800 0 0 0 0 0 0 0 0 0 5779800 4603300 4858500 0 0 0 6267800 7579100 6868400 0 0 0 9415 1542 9182 174940;174941;174942;174943;174944;174945;174946;174947;174948 107558 107558 0 IEDNVVIHENNVENMTR Unmodified 2024.9586 0.95855248 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 25.172 24.178 2;3 1.8939E-31 11018 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 266.15 256.36 1781400000 223600000 211280000 194730000 0 0 0 167520000 129150000 121450000 0 0 0 106170000 103660000 103520000 0 0 0 125400000 147070000 147870000 0 0 0 9416 1170 9183 174949;174950;174951;174952;174953;174954;174955;174956;174957;174958;174959;174960;174961;174962;174963;174964;174965;174966;174967;174968;174969;174970;174971 107559;107560;107561;107562;107563;107564;107565;107566;107567;107568;107569;107570;107571;107572;107573;107574;107575;107576;107577;107578 107562 20 IEDTDLER Unmodified 989.46655 0.46655441 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.07 15.842 2 0.00051245 5293 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.81 106.64 3254600000 159780000 176720000 148480000 1231200 0 0 299150000 301860000 299760000 0 0 1607000 279490000 247090000 327200000 0 0 0 349780000 336720000 325690000 0 0 0 9417 92 9184 174972;174973;174974;174975;174976;174977;174978;174979;174980;174981;174982;174983;174984;174985 107579;107580;107581;107582;107583;107584;107585;107586 107580 8 IEDVHVFDGHIACDAASNSEIVLPLVVK Unmodified 3046.5434 0.54337152 1846 P76270 msrC Free methionine-R-sulfoxide reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 49.622 48.225 3;4 2.0013E-41 23354 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 216.14 211.01 1710700000 173890000 141760000 149420000 0 0 0 129140000 118020000 113890000 0 2584300 0 151480000 138100000 100440000 0 0 0 165670000 156140000 161010000 3575000 5560200 0 9418 1846 9185 174986;174987;174988;174989;174990;174991;174992;174993;174994;174995;174996;174997;174998;174999;175000;175001;175002;175003;175004;175005;175006;175007;175008;175009;175010;175011;175012 107587;107588;107589;107590;107591;107592;107593;107594;107595;107596;107597;107598;107599;107600;107601;107602;107603;107604;107605;107606 107594 20 IEDVPQEQR Unmodified 1112.5462 0.54620171 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.446 14.065 2 1.0794E-07 4232 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.09 173.22 2093000000 225220000 201450000 214580000 10524000 11931000 12360000 149130000 157640000 169060000 31380000 26836000 24168000 110440000 102100000 94829000 11551000 8860800 8882400 184070000 147380000 138640000 18474000 16551000 16978000 9419 1210 9186 175013;175014;175015;175016;175017;175018;175019;175020;175021;175022;175023;175024;175025;175026;175027;175028;175029;175030;175031;175032;175033;175034;175035;175036 107607;107608;107609;107610;107611;107612;107613;107614;107615;107616;107617;107618;107619;107620;107621;107622;107623;107624;107625;107626;107627;107628;107629 107626 22 IEDYQPQALAILGK Unmodified 1557.8403 0.84025847 519 P0A9H1 mug G/U mismatch-specific DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 43.666 42.144 2;3 6.6215E-08 20963 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.86 136.52 462310000 83687000 77333000 80372000 0 0 0 40943000 37258000 35714000 0 0 0 11787000 15032000 14447000 0 0 0 20674000 20048000 25012000 0 0 0 9420 519 9187 175037;175038;175039;175040;175041;175042;175043;175044;175045;175046;175047;175048;175049;175050;175051;175052;175053;175054;175055;175056;175057;175058;175059 107630;107631;107632;107633;107634;107635;107636;107637;107638;107639;107640;107641;107642;107643 107630 14 IEEALGEK Unmodified 887.46001 0.46001246 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.563 14.367 2 0.00048964 4297 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 136.11 81.588 25219000000 1386000000 1239300000 1069500000 4800700 4951300 6114700 3525300000 3113300000 3065900000 3189900 0 3147600 2009200000 1988500000 1854000000 0 0 0 2067100000 1991000000 1887100000 0 0 0 9421 270 9188 175060;175061;175062;175063;175064;175065;175066;175067;175068;175069;175070;175071;175072;175073;175074;175075;175076 107644;107645;107646;107647;107648;107649;107650;107651;107652;107653;107654;107655;107656;107657;107658;107659;107660;107661 107660 18 IEEDKILQAK Unmodified 1185.6605 0.66050319 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 2 2 1 1 1 1 2 2 1 17.284 17.437 2;3 0.00011037 5087 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 138.98 91.127 58978000 0 0 0 0 2826100 1403100 0 0 0 12950000 9679000 8208300 0 0 0 1777700 1904500 2313500 0 1421500 0 7317000 5876700 3300900 9422 439 9189 175077;175078;175079;175080;175081;175082;175083;175084;175085;175086;175087;175088;175089;175090;175091;175092;175093 107662;107663;107664;107665;107666;107667;107668 107666 7 IEEDLLGTR Unmodified 1044.5451 0.54513908 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 27.348 25.99 2 4.7532E-05 11630 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.65 82.621 4637300000 295490000 274470000 257860000 0 0 0 563240000 532250000 536210000 2126000 2224900 2737600 429690000 411370000 400710000 0 0 0 293970000 312700000 315760000 2467500 2143000 1910500 9423 697 9190 175094;175095;175096;175097;175098;175099;175100;175101;175102;175103;175104;175105;175106;175107;175108;175109;175110;175111;175112 107669;107670;107671;107672;107673;107674;107675;107676;107677;107678;107679 107676 9 IEEHDKPGALNAQALK Unmodified 1732.9108 0.91079765 462 P0A8V0 rbn Ribonuclease BN yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.586 15.358 4 0.16902 4782 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 10.099 3.2087 132910000 21718000 0 21560000 0 0 0 8558500 9114600 8307500 0 0 0 9174300 8863900 5559300 0 0 0 13497000 15454000 11106000 0 0 0 9424 462 9191 175113;175114;175115;175116;175117;175118;175119;175120;175121;175122;175123 107680 107680 1 IEELITELK Unmodified 1086.6172 0.61724139 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.688 34.105 2 4.5243E-05 16320 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 150.24 121.09 3348900000 0 0 0 1025100 1142100 1214800 242100000 261820000 258580000 52494000 56211000 63295000 305300000 292330000 295830000 17668000 14262000 13304000 427140000 456390000 473090000 39395000 37713000 38644000 9425 594 9192 175124;175125;175126;175127;175128;175129;175130;175131;175132;175133;175134;175135;175136;175137;175138;175139;175140;175141;175142;175143;175144;175145;175146;175147 107681;107682;107683;107684;107685;107686;107687;107688;107689;107690;107691;107692;107693;107694;107695;107696;107697;107698;107699;107700;107701 107694 17 IEELITELKQDYTVVIVTHNMQQAAR Unmodified 3041.5856 0.58557069 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 2 1 2 2 2 50.025 48.875 3;4 6.277E-61 19637 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 260.32 257.9 712640000 0 0 0 2161500 1744600 2965000 0 0 0 132100000 113880000 137560000 0 0 0 20327000 29602000 33482000 3940300 0 0 84181000 71965000 78734000 9426 594 9193 175148;175149;175150;175151;175152;175153;175154;175155;175156;175157;175158;175159;175160;175161;175162;175163;175164;175165;175166;175167 107702;107703;107704;107705;107706;107707;107708;107709;107710;107711;107712;107713;107714;107715 107708 14 IEELTGVPIDIISTGPDR Unmodified 1924.0153 0.015322298 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 51.554 50.304 2;3 2.8385E-17 24561 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 215.51 206.78 2934700000 277160000 256270000 224790000 510410 671490 0 205360000 195260000 194730000 0 0 0 262430000 229560000 250040000 0 0 0 279500000 283760000 274620000 0 0 0 9427 333 9194 175168;175169;175170;175171;175172;175173;175174;175175;175176;175177;175178;175179;175180;175181;175182;175183;175184;175185;175186;175187;175188;175189;175190;175191;175192;175193 107716;107717;107718;107719;107720;107721;107722;107723;107724;107725;107726;107727;107728;107729;107730;107731;107732;107733;107734;107735;107736;107737;107738 107729 23 IEENVGDFR Unmodified 1077.5091 0.50908792 1893 P77293 yfdH Bactoprenol glucosyl transferase homolog from prophage CPS-53 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.175 21.981 2 1.6488E-05 8749 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 157.86 100.3 197230000 8272100 4417700 5371400 2310300 2268900 1331000 15305000 16635000 11130000 5537200 5050400 4961000 13882000 10823000 11347000 1369400 0 778190 22291000 22491000 19122000 5512900 3444700 3579000 9428 1893 9195 175194;175195;175196;175197;175198;175199;175200;175201;175202;175203;175204;175205;175206;175207;175208;175209;175210;175211;175212;175213;175214;175215;175216 107739;107740;107741;107742;107743;107744;107745;107746;107747;107748;107749;107750;107751;107752;107753 107751 14 IEEPQWENYDR Unmodified 1477.6474 0.64737232 716 P0ACB4 hemG Protoporphyrinogen IX dehydrogenase [menaquinone] yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.059 28.551 2 1.9753E-05 10742 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 136.63 136.63 107000000 4987400 5404300 4268800 1267500 1017300 1427600 9433500 11635000 8954000 5868400 5643100 5364000 6019700 6149000 5923900 0 0 1110200 10316000 6527300 0 2135700 1772900 1773200 9429 716 9196 175217;175218;175219;175220;175221;175222;175223;175224;175225;175226;175227;175228;175229;175230;175231;175232;175233;175234;175235;175236;175237 107754;107755;107756;107757;107758;107759;107760;107761 107756 4 IEESEINYLLNVYNTHFK Unmodified 2225.1004 0.10044891 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 1 2 2 2 2 1 1 2 2 2 2 2 2 52.67 51.452 2;3 1.5368E-67 25565 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 310.68 304.26 4463600000 20107000 21270000 14613000 3743200 4811700 4525300 599570000 538140000 464960000 564240000 598820000 33500000 220670000 195110000 211200000 63515000 55307000 60838000 205930000 214180000 214090000 54221000 47254000 53000000 9430 1088 9197 175238;175239;175240;175241;175242;175243;175244;175245;175246;175247;175248;175249;175250;175251;175252;175253;175254;175255;175256;175257;175258;175259;175260;175261;175262;175263;175264;175265;175266;175267;175268;175269;175270;175271;175272;175273;175274;175275;175276 107762;107763;107764;107765;107766;107767;107768;107769;107770;107771;107772;107773;107774;107775;107776;107777;107778;107779;107780;107781;107782;107783;107784;107785;107786;107787;107788;107789;107790;107791;107792;107793;107794 107772 32 IEESEINYLLNVYNTHFKK Unmodified 2353.1954 0.19541193 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 2 2 2 2 48.444 47.263 3;4 2.5112E-16 18957 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 157.51 157.27 572990000 0 0 0 1942300 2485500 2116400 0 0 0 149220000 149610000 134370000 0 0 0 11906000 18780000 33636000 0 0 0 23921000 23527000 21470000 9431 1088 9198 175277;175278;175279;175280;175281;175282;175283;175284;175285;175286;175287;175288;175289;175290;175291;175292;175293;175294;175295 107795;107796;107797;107798;107799;107800;107801;107802;107803;107804;107805;107806;107807;107808 107804 14 IEETQKEK Unmodified 1003.5186 0.51858998 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 10.149 10.282 2 0.0050381 1766 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 96.492 29.46 19719000 0 0 0 0 0 0 0 0 0 5498500 4469300 4755500 0 0 0 1274700 0 541350 0 0 0 2184700 0 994990 9432 416 9199 175296;175297;175298;175299;175300;175301;175302;175303 107809;107810;107811;107812 107811 4 IEEVLTLALQNEPSGMQVVTAK Unmodified 2369.2512 0.25121225 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 51.423 50.304 2;3 7.7608E-28 19512 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 244.67 236.69 977060000 39951000 41266000 35499000 2469600 3141600 3448600 57690000 60918000 54753000 11411000 24365000 30342000 51413000 43694000 46650000 94754000 78753000 95075000 47717000 53260000 51794000 18180000 14842000 15679000 9433 536 9200 175304;175305;175306;175307;175308;175309;175310;175311;175312;175313;175314;175315;175316;175317;175318;175319;175320;175321;175322;175323;175324;175325;175326;175327;175328;175329;175330;175331;175332;175333;175334;175335;175336;175337;175338;175339;175340;175341;175342;175343;175344;175345;175346;175347 107813;107814;107815;107816;107817;107818;107819;107820;107821;107822;107823;107824;107825;107826;107827;107828;107829;107830 107814 18 IEFTLYDCLDR Unmodified 1443.6704 0.67041595 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.907 45.505 2 2.1949E-10 21378 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 191.67 171.88 1933200000 149080000 137370000 122560000 1413100 1852500 1860700 177730000 192240000 178960000 4800200 2896800 4584500 166460000 141290000 136140000 1266900 1757500 0 169620000 172060000 165350000 1834400 2066200 0 9434 445 9201 175348;175349;175350;175351;175352;175353;175354;175355;175356;175357;175358;175359;175360;175361;175362;175363;175364;175365;175366;175367;175368;175369 107831;107832;107833;107834;107835;107836;107837;107838;107839;107840;107841;107842;107843;107844 107842 14 IEFVEIYEPFSEGQAKAQADR Unmodified 2426.1754 0.17540477 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.085 48.678 3 0.16906 23546 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 13.872 5.4819 416900000 49377000 44127000 42427000 0 0 0 13016000 15565000 15822000 0 0 0 27246000 24769000 26294000 0 0 0 53579000 52916000 51763000 0 0 0 9435 219 9202 175370;175371;175372;175373;175374;175375;175376;175377;175378;175379;175380;175381 107845 107845 1 IEGCDDGVIMHLK Unmodified 1485.6956 0.69558484 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 26.952 25.809 2;3 0.0033408 11725 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 62.14 59.778 618630000 108680000 103900000 80958000 0 0 0 24797000 25467000 27947000 0 0 0 30588000 23656000 28801000 0 0 0 53118000 57488000 53235000 0 0 0 9436 1302 9203 175382;175383;175384;175385;175386;175387;175388;175389;175390;175391;175392;175393;175394;175395;175396;175397;175398;175399;175400;175401;175402;175403;175404 107846;107847;107848;107849;107850;107851;107852;107853;107854;107855;107856 107853 7 IEGEISR Unmodified 802.41848 0.418482 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 12.207 12.839 2 0.0017574 3555 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.34 63.544 818140000 0 0 0 0 0 0 0 159350000 0 2037800 212130 1156800 150310000 0 122090000 0 0 0 190600000 192380000 0 0 0 0 9437 158 9204 175405;175406;175407;175408;175409;175410;175411;175412 107857;107858;107859;107860;107861 107857 5 IEGGIVVR Unmodified 841.50215 0.50215205 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.132 19.688 2 0.00051593 7471 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.66 72.666 2268200000 160670000 135700000 136210000 3081500 2403600 2831200 188090000 190180000 149290000 0 0 0 213310000 191940000 183280000 0 0 0 231150000 247150000 232940000 0 0 0 9438 161 9205 175413;175414;175415;175416;175417;175418;175419;175420;175421;175422;175423;175424;175425;175426;175427 107862;107863;107864;107865;107866;107867;107868;107869;107870;107871;107872;107873;107874;107875;107876;107877 107867 16 IEGILEK Unmodified 800.46437 0.46436956 467 P0A8W5 yqgE UPF0301 protein YqgE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.467 20.854 2 0.004343 8223 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.21 28.898 279890000 0 0 0 3574500 2403000 3135000 29575000 29115000 32660000 0 0 0 26536000 22379000 19498000 0 0 0 34375000 37989000 38653000 0 0 0 9439 467 9206 175428;175429;175430;175431;175432;175433;175434;175435;175436;175437;175438;175439 107878;107879;107880;107881;107882;107883;107884 107880 7 IEGVANLQATR Unmodified 1170.6357 0.63568542 314 P0A761 nanE Putative N-acetylmannosamine-6-phosphate 2-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 2 2 1 21.995 22.013 2 9.2655E-06 8742 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 147.95 92.416 226240000 33414000 26247000 27427000 0 0 0 11017000 15833000 12996000 0 0 0 16808000 17524000 18029000 0 0 0 17460000 16522000 12961000 0 0 0 9440 314 9207 175440;175441;175442;175443;175444;175445;175446;175447;175448;175449;175450;175451;175452;175453;175454 107885;107886;107887;107888;107889;107890;107891;107892;107893;107894;107895;107896 107894 10 IEGVEFFAVNTDAQALR Unmodified 1878.9476 0.94757708 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 3 2 1 2 2 3 2 3 3 2 3 50.04 48.622 2;3 1.987E-24 23838 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 216.68 200.59 576150000 46043000 38000000 38508000 2648500 0 2645100 50332000 52129000 44274000 2912400 13242000 14465000 41315000 36483000 38224000 0 0 0 52431000 47320000 55181000 0 0 0 9441 502 9208 175455;175456;175457;175458;175459;175460;175461;175462;175463;175464;175465;175466;175467;175468;175469;175470;175471;175472;175473;175474;175475;175476;175477;175478;175479;175480;175481;175482;175483;175484;175485;175486;175487;175488;175489;175490 107897;107898;107899;107900;107901;107902;107903;107904;107905;107906;107907;107908;107909;107910;107911;107912;107913;107914 107908 15 IEGVEFFAVNTDAQALRK Unmodified 2007.0425 0.042540102 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 2 2 1 2 2 1 1 1 1 1 1 1 41.357 39.663 2;3 0.00023584 16193 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 90.731 70.35 189270000 0 0 0 11513000 8800200 11543000 0 0 0 41867000 34106000 27313000 0 0 0 14745000 6340000 10357000 0 3160600 0 10053000 0 9476200 9442 502 9209 175491;175492;175493;175494;175495;175496;175497;175498;175499;175500;175501;175502;175503;175504;175505;175506 107915;107916;107917 107915 3 IEGVPESNISR Unmodified 1199.6146 0.61461563 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.786 21.171 2 1.4106E-07 8697 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 135.55 101.75 18411000000 5427600000 4649900000 4764500000 0 0 1638400 0 512940000 501800000 0 0 0 373900000 360590000 378620000 0 0 0 452640000 519930000 467370000 0 0 0 9443 1217 9210 175507;175508;175509;175510;175511;175512;175513;175514;175515;175516;175517;175518;175519 107918;107919;107920;107921;107922;107923;107924;107925;107926;107927;107928;107929 107918 12 IEHVFDDFK Unmodified 1148.5502 0.55022446 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.725 24.653 2;3 0.002403 11259 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 63.426 60.653 3492000000 395480000 379640000 395500000 0 0 0 284270000 277100000 238960000 0 0 0 232700000 220350000 199350000 0 0 0 283560000 298380000 286760000 0 0 0 9444 834 9211 175520;175521;175522;175523;175524;175525;175526;175527;175528;175529;175530;175531;175532;175533;175534;175535;175536;175537;175538;175539;175540;175541;175542;175543 107930;107931;107932;107933;107934;107935;107936;107937;107938;107939;107940;107941;107942;107943;107944 107932 12 IEHYHDWLR Unmodified 1267.6098 0.60980502 1178 P21363 yciE Protein YciE yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 17.821 18.487 2 0.00078026 6795 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.43 98.712 57864000 16131000 21502000 20231000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9445 1178 9212 175544;175545;175546 107945;107946 107945 2 IEHYLQPGVVLPVPHL Unmodified 1810.0141 0.014140507 1319 P28631 holB DNA polymerase III subunit delta' yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 47.529 46.106 3 0.023526 22437 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 41.378 40.536 46066000 6671000 4789100 4845700 0 0 0 4153800 4381700 3186700 0 0 0 6463900 0 0 0 0 0 3145800 3777800 4650100 0 0 0 9446 1319 9213 175547;175548;175549;175550;175551;175552;175553;175554;175555;175556 107947;107948 107948 2 IEIAYCGVCHSDLHQVR Unmodified 2055.9619 0.96186371 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 3 3 3 23.233 22.729 2;3;4 8.1574E-40 9785 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 210.37 186.89 1598500000 567720000 565890000 464870000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9447 1762 9214 175557;175558;175559;175560;175561;175562;175563;175564;175565 107949;107950;107951;107952;107953;107954;107955;107956;107957 107949 9 IEIFSQR Unmodified 891.48142 0.48141661 1165 P20099 bisC Biotin sulfoxide reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 25.752 24.541 2 0.018509 10912 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.262 53.341 36748000 0 0 0 0 0 0 0 8906300 6788100 0 0 0 0 0 0 0 0 0 6787900 7380000 6886000 0 0 0 9448 1165 9215 175566;175567;175568;175569;175570 107958;107959 107959 0 IEIPGCSLCMGNQAR Unmodified 1704.7746 0.77458022 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 35.352 33.823 2;3 2.5521E-11 15528 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 164.65 161.12 4768800000 798500000 720080000 650370000 4294300 2888000 3885200 233030000 211170000 193440000 2193600 1756800 2319400 217770000 212570000 209240000 2044400 1385300 1204500 439270000 440600000 408540000 3493600 5454400 3341400 9449 1444 9216 175571;175572;175573;175574;175575;175576;175577;175578;175579;175580;175581;175582;175583;175584;175585;175586;175587;175588;175589;175590;175591;175592;175593;175594;175595;175596;175597;175598;175599;175600;175601;175602;175603;175604;175605;175606 107960;107961;107962;107963;107964;107965;107966;107967;107968;107969;107970;107971;107972;107973;107974;107975;107976;107977;107978;107979;107980;107981;107982;107983;107984;107985;107986 107983 27 IEIPVLPLR Unmodified 1048.6645 0.66446635 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.562 47.343 2 7.8093E-05 17783 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 141.78 141.78 1814900000 111890000 105370000 115500000 1614700 1384900 1939700 161130000 167620000 143140000 17486000 19476000 13594000 150680000 121890000 124070000 41624000 31300000 23110000 151470000 149270000 140850000 7421600 6327900 6760900 9450 536 9217 175607;175608;175609;175610;175611;175612;175613;175614;175615;175616;175617;175618;175619;175620;175621;175622;175623;175624;175625;175626;175627;175628;175629;175630 107987;107988;107989;107990;107991;107992;107993;107994;107995;107996;107997;107998;107999;108000;108001;108002;108003;108004;108005;108006 107987 20 IEISELNR Unmodified 972.52401 0.52400971 11;17 CON__P04264;CON__P35908 no no 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.404 23.512 2 3.5796E-05 7542 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 173.88 78.256 1077300000 0 0 0 19913000 18017000 19187000 0 0 0 211000000 222360000 225730000 1320600 0 0 13708000 9578200 9303900 1398200 1525600 0 104550000 122920000 96828000 + 9451 11;17 9218 175631;175632;175633;175634;175635;175636;175637;175638;175639;175640;175641;175642;175643;175644;175645 108007;108008;108009;108010 108010 4 IEIVVPDDIVDTCVDTIIR Unmodified 2184.1348 0.13478551 567 P0A9Z1 glnB Nitrogen regulatory protein P-II 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 2 2 2 2 1 2 2 54.727 53.298 2;3 1.8309E-22 26165 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 187.57 178.03 643110000 61487000 79851000 69430000 0 0 0 10425000 7011000 40843000 0 0 0 71757000 61470000 55008000 0 0 0 50485000 70040000 65303000 0 0 0 9452 567 9219 175646;175647;175648;175649;175650;175651;175652;175653;175654;175655;175656;175657;175658;175659;175660;175661;175662;175663;175664;175665 108011;108012;108013;108014;108015;108016;108017;108018;108019 108012 8 IEKDWYTLMNTIINGSASEADAAR Unmodified 2668.2803 0.28028055 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 54.458 53.286 3 3.9865E-10 20266 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 121.38 114.1 1417300000 25176000 23593000 27138000 2155600 0 0 19426000 18218000 20669000 0 0 0 24870000 0 19426000 308200000 427810000 434860000 24031000 19776000 21965000 0 0 0 9453 712 9220 175666;175667;175668;175669;175670;175671;175672;175673;175674;175675;175676;175677;175678;175679;175680;175681 108020;108021;108022;108023 108021 4 IEKDWYTLMNTIINGSASEADAARK Unmodified 2796.3752 0.37524356 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 50.526 50.375 3;4 1.07E-22 19413 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 177.3 174.82 438950000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 149260000 137110000 151530000 0 0 0 0 1056400 0 9454 712 9221 175682;175683;175684;175685;175686;175687;175688 108024;108025;108026;108027;108028;108029 108025 6 IEKGPNWEDDLGGEFDK Unmodified 1947.885 0.88503641 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.349 33.443 3 4.2582E-05 13104 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 82.482 78.878 184610000 0 0 0 2209300 2050500 1775100 0 0 3443200 15249000 11245000 11689000 0 0 0 0 0 0 4334800 5362800 2981100 38698000 41120000 44452000 9455 1067 9222 175689;175690;175691;175692;175693;175694;175695;175696;175697;175698;175699;175700;175701;175702 108030;108031;108032;108033;108034;108035;108036;108037 108032 8 IEKGPNWEDDLGGEFDKLAK Unmodified 2260.1012 0.10117719 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.727 37.178 4 6.1283E-05 14464 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 77.391 76.206 198360000 0 0 0 5065600 4532600 3095600 0 0 0 12118000 10213000 9362700 0 0 0 6700900 6394600 5364600 0 0 0 39226000 49425000 46865000 9456 1067 9223 175703;175704;175705;175706;175707;175708;175709;175710;175711;175712;175713;175714 108038;108039;108040;108041;108042;108043 108038 6 IEKPAGISNPK Unmodified 1152.6503 0.65027285 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 2 1 2 2 2 2 2 2 12.113 12.867 2;3 0.00016245 3572 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 120.99 103 1265900000 369420000 97165000 125800000 0 0 0 169290000 189650000 109470000 2647200 642710 0 36957000 33508000 30778000 0 0 0 32720000 35324000 32489000 0 0 0 9457 757 9224 175715;175716;175717;175718;175719;175720;175721;175722;175723;175724;175725;175726;175727;175728;175729;175730;175731;175732;175733;175734;175735;175736;175737;175738 108044;108045;108046;108047;108048;108049;108050;108051;108052;108053;108054;108055;108056;108057;108058 108047 15 IELDQDYIDER Unmodified 1407.6518 0.65178899 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.475 32.035 2 4.6059E-06 15257 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.97 148.36 145090000 9946900 11316000 9662800 0 0 0 10782000 11206000 8480000 0 0 0 10195000 9239800 9418000 0 0 0 20276000 17811000 16758000 0 0 0 9458 1203 9225 175739;175740;175741;175742;175743;175744;175745;175746;175747;175748;175749;175750 108059;108060;108061;108062;108063;108064 108059 6 IELGEIDR Unmodified 943.49746 0.4974606 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 26.806 25.632 2 0.001419 11596 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.01 40.591 130340000 4876300 3209400 0 0 0 0 7020800 7705400 6604300 0 0 0 13131000 12182000 12791000 0 0 0 20791000 22417000 19612000 0 0 0 9459 1070 9226 175751;175752;175753;175754;175755;175756;175757;175758;175759;175760;175761 108065;108066;108067;108068;108069;108070 108067 6 IELIEEK Unmodified 872.4855 0.48549893 707 P0AC81 gloA Lactoylglutathione lyase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.664 22.134 2 0.0019661 9362 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.65 120.65 732500000 61519000 64796000 64169000 0 0 0 95134000 91766000 75371000 0 0 0 49910000 34574000 37452000 0 0 0 52230000 55755000 49825000 0 0 0 9460 707 9227 175762;175763;175764;175765;175766;175767;175768;175769;175770;175771;175772;175773 108071;108072;108073 108072 3 IELLPYHELGK Unmodified 1310.7234 0.72343779 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 33.912 32.458 2;3 0.00011332 15960 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.31 110.42 2297700000 160490000 151390000 136250000 2404800 2781700 2606500 229230000 218460000 229360000 5468100 5013700 5346700 189410000 187340000 180720000 2778900 2585600 3362800 189950000 210360000 172620000 3148500 2997000 3676000 9461 540 9228 175774;175775;175776;175777;175778;175779;175780;175781;175782;175783;175784;175785;175786;175787;175788;175789;175790;175791;175792;175793;175794;175795;175796;175797;175798;175799;175800;175801;175802;175803;175804;175805;175806;175807;175808;175809 108074;108075;108076;108077;108078;108079;108080;108081;108082;108083;108084;108085;108086;108087;108088;108089;108090;108091;108092;108093;108094;108095 108077 22 IELPSIPDGCVQNAHMFYIK Unmodified 2331.1392 0.13915938 1310 P27833 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.624 46.078 3 7.3244E-07 22279 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.152 86.239 146590000 10276000 7813500 9316500 0 0 0 10761000 11424000 6988400 2945600 3366300 2711900 14420000 7948100 9381300 0 0 0 14489000 13813000 15811000 2216700 0 2913300 9462 1310 9229 175810;175811;175812;175813;175814;175815;175816;175817;175818;175819;175820;175821;175822;175823;175824;175825;175826 108096;108097 108096 2 IELSFIGTDALSK Unmodified 1392.75 0.75004648 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.779 46.364 2 4.966E-09 21826 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 170.52 168.93 262620000 1967100 3620900 3135100 0 0 0 27777000 28486000 24856000 0 0 0 31354000 29417000 28584000 0 0 0 31671000 27029000 24718000 0 0 0 9463 1424 9230 175827;175828;175829;175830;175831;175832;175833;175834;175835;175836;175837;175838 108098;108099;108100;108101;108102;108103 108101 6 IELSSAQQTDVNLPYITADATGPK Unmodified 2531.2755 0.27551274 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 46.006 44.347 2;3 2.3599E-60 17632 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 324.25 318.09 6302700000 480760000 439040000 444010000 17685000 22200000 19654000 598710000 568990000 502020000 121360000 120410000 111480000 429190000 403160000 386150000 0 0 0 498980000 556760000 509520000 26543000 24994000 21036000 9464 293 9231 175839;175840;175841;175842;175843;175844;175845;175846;175847;175848;175849;175850;175851;175852;175853;175854;175855;175856;175857;175858;175859;175860;175861;175862;175863;175864;175865;175866;175867;175868;175869;175870;175871;175872;175873;175874;175875;175876;175877;175878;175879;175880 108104;108105;108106;108107;108108;108109;108110;108111;108112;108113;108114;108115;108116;108117;108118;108119;108120;108121;108122;108123;108124;108125;108126;108127;108128;108129;108130;108131;108132;108133;108134;108135;108136;108137;108138;108139;108140;108141;108142;108143;108144;108145;108146;108147;108148;108149;108150;108151 108108 48 IEMAWQETFWAHGFGK Unmodified 1936.893 0.89303909 1123 P16681 phnB Protein PhnB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 50.112 48.629 3 2.083E-06 23842 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.541 85.937 79811000 19935000 20194000 12702000 1526300 1275200 1850200 8391200 6333900 6359700 1244100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9465 1123 9232 175881;175882;175883;175884;175885;175886;175887;175888;175889;175890 108152;108153 108152 2 IEMGETPEQAVVR Unmodified 1457.7184 0.71842877 185 P08337 mutT 8-oxo-dGTP diphosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.624 26.509 2 2.5215E-06 12189 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.32 96.375 117800000 8341800 4419100 6310500 0 0 0 9129500 9820400 0 0 0 0 12177000 9050300 9294900 0 0 0 14752000 16645000 17860000 0 0 0 9466 185 9233 175891;175892;175893;175894;175895;175896;175897;175898;175899;175900;175901 108154;108155;108156;108157;108158 108154 5 IENATHAPVDFDTNIATTITAHDAGYINQPLEK Unmodified 3579.7482 0.74815558 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 43.451 41.931 4 2.3776E-13 19764 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.39 113.31 69684000 0 0 0 0 0 0 0 4697600 7148000 0 0 0 10969000 12712000 11631000 0 0 0 8365500 7515100 6644500 0 0 0 9467 1559 9234 175902;175903;175904;175905;175906;175907;175908;175909 108159 108159 1 IENGGLHPVTR Unmodified 1191.636 0.63601977 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 2 2 1 1 1 2 1 12.562 13.34 2;3 3.5967E-05 3988 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.46 95.805 394730000 57543000 77065000 75087000 0 0 0 37235000 33762000 0 0 0 0 13061000 0 0 0 0 0 57465000 43507000 0 0 0 0 9468 183 9235 175910;175911;175912;175913;175914;175915;175916;175917;175918;175919;175920 108160;108161;108162;108163;108164 108160 4 IENGILVLEDINEHPFR Unmodified 2007.0425 0.042540102 1803 P76008 ldcA Murein tetrapeptide carboxypeptidase yes yes 0 0 0 By MS/MS By MS/MS 1 1 31.745 31.798 3;5 0.0029227 21830 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 63.337 53.58 2591700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2591700 0 0 0 0 0 0 0 9469 1803 9236 175921;175922 108165;108166 108166 1 IENLEELVTATR Unmodified 1386.7355 0.73545904 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.169 41.679 2 2.2925E-17 14807 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 221.32 203.5 213950000 12427000 12129000 10170000 0 0 0 10140000 10305000 8768800 2095700 2345600 1309600 8093300 7949700 8576600 23097000 24182000 23820000 12180000 12233000 12480000 4291200 3729500 3631600 9470 80 9237 175923;175924;175925;175926;175927;175928;175929;175930;175931;175932;175933;175934;175935;175936;175937;175938;175939;175940;175941;175942;175943 108167;108168;108169;108170;108171;108172;108173;108174 108169 8 IENPQPDEKPLGETLK Unmodified 1806.9363 0.9363437 1524 P39321 tamB Translocation and assembly module TamB yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.771 21.636 3 0.12518 7394 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 15.627 11.723 28313000 0 0 0 0 0 403810 0 0 0 2526400 2253400 0 3981300 3276800 2234300 0 0 0 4980400 0 6644800 0 2011500 0 9471 1524 9238 175944;175945;175946;175947;175948;175949;175950;175951;175952 108175 108175 1 IENQEGLNNFDEILEASDGIMVAR Unmodified 2676.2701 0.27010979 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 2 2 2 2 3 54.759 53.309 2;3 2.0045E-112 26191 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 361.38 356.67 2506300000 208920000 189750000 145440000 0 0 0 246090000 237230000 237480000 0 0 0 188710000 185880000 194660000 0 0 0 251920000 214110000 206060000 0 0 0 9472 771 9239 175953;175954;175955;175956;175957;175958;175959;175960;175961;175962;175963;175964;175965;175966;175967;175968;175969;175970;175971;175972;175973;175974;175975;175976;175977;175978 108176;108177;108178;108179;108180;108181;108182;108183;108184;108185;108186;108187;108188;108189;108190;108191;108192;108193;108194;108195;108196;108197;108198;108199 108185 24 IENTFLSEDQVDQLALYAPQATVNR Unmodified 2834.4087 0.40865218 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 53.17 51.789 2 1.704E-97 25582 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 414.9 404.25 1058900000 335140000 325090000 329010000 0 0 0 0 0 0 0 0 0 5755400 5664100 5423300 0 0 0 16341000 15673000 20812000 0 0 0 9473 339 9240 175979;175980;175981;175982;175983;175984;175985;175986;175987 108200;108201;108202 108201 3 IEPGDVLVTDMTDPDWEPIMK Unmodified 2400.1229 0.12290019 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 54.851 53.407 2;3 5.6572E-11 26262 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.57 143.2 1160200000 122740000 125010000 116410000 6334400 4442800 2311900 55500000 48805000 65320000 0 15287000 9201100 101300000 82910000 103040000 0 0 0 94943000 99170000 103870000 0 0 3622100 9474 1210 9241 175988;175989;175990;175991;175992;175993;175994;175995;175996;175997;175998;175999;176000;176001;176002;176003;176004;176005;176006;176007;176008;176009;176010;176011;176012;176013;176014;176015;176016;176017;176018;176019;176020 108203;108204;108205;108206;108207;108208;108209;108210;108211;108212;108213;108214;108215;108216 108204 14 IEPGDVLVTDMTDPDWEPIMKK Unmodified 2528.2179 0.21786321 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 51.7 50.307 3 9.3573E-07 19971 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 99.407 96.794 96858000 0 0 0 8842800 5984300 8671900 0 0 0 13149000 13589000 16966000 0 0 0 0 0 0 0 0 0 7769700 10361000 11524000 9475 1210 9242 176021;176022;176023;176024;176025;176026;176027;176028;176029 108217;108218;108219;108220;108221;108222;108223;108224 108220 8 IEPSLEAAFVDYGAER Unmodified 1765.8523 0.85227972 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 47.569 46.254 2 0.000106 22467 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.953 84.752 45991000 14336000 11394000 15033000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2779900 2447700 0 0 0 9476 1183 9243 176030;176031;176032;176033;176034 108225;108226;108227 108227 0 IEQAAEGLECR Unmodified 1274.5925 0.59249998 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.669 17.426 2 1.4538E-19 6219 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 227.88 192.44 379840000 76948000 68716000 65604000 0 0 0 16973000 17012000 12352000 0 0 0 13189000 12172000 11970000 0 0 0 27273000 29590000 28042000 0 0 0 9477 1326 9244 176035;176036;176037;176038;176039;176040;176041;176042;176043;176044;176045;176046 108228;108229;108230;108231;108232;108233;108234;108235;108236;108237;108238;108239 108231 12 IEQAPGQHGAR Unmodified 1162.5843 0.58431855 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 5 1 1 1 3 5 3 1 1 1 3 4 2 3 4 3 9.6151 10.398 2;3 1.5646E-07 2534 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.12 150.68 8523800000 1509600000 1371700000 1285900000 2675700 2776100 3459800 47458000 21871000 18347000 9601100 17444000 18052000 677650000 535430000 553290000 0 0 0 813520000 746430000 888570000 0 0 0 9478 375 9245 176047;176048;176049;176050;176051;176052;176053;176054;176055;176056;176057;176058;176059;176060;176061;176062;176063;176064;176065;176066;176067;176068;176069;176070;176071;176072;176073;176074;176075;176076;176077;176078;176079;176080;176081;176082;176083;176084;176085;176086;176087;176088;176089;176090;176091;176092;176093;176094;176095;176096;176097 108240;108241;108242;108243;108244;108245;108246;108247;108248;108249;108250;108251;108252;108253;108254;108255;108256;108257;108258;108259;108260;108261;108262;108263;108264;108265;108266;108267;108268;108269;108270;108271;108272;108273;108274;108275;108276;108277;108278 108261 39 IEQESFDFFNR Unmodified 1430.6466 0.64664404 301 P0A720 tmk Thymidylate kinase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.029 41.477 2 0.00011488 19335 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 117.01 114.28 226270000 0 17035000 17015000 0 0 0 19413000 20080000 17750000 0 0 0 19979000 21580000 21457000 0 0 0 23102000 23882000 24979000 0 0 0 9479 301 9246 176098;176099;176100;176101;176102;176103;176104;176105;176106;176107;176108 108279;108280;108281;108282;108283;108284;108285;108286;108287 108287 3 IEQHLSETK Unmodified 1083.556 0.55603812 1178 P21363 yciE Protein YciE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 2 1 1 10.712 11.486 2;3 1.4381E-05 2751 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.75 108.97 1019100000 337300000 303930000 281450000 0 0 0 49566000 0 8060200 0 0 0 0 0 31276000 0 0 0 0 4095800 3416900 0 0 0 9480 1178 9247 176109;176110;176111;176112;176113;176114;176115;176116;176117;176118;176119;176120 108288;108289;108290;108291;108292;108293 108292 6 IEQIFVNAPAGWR Unmodified 1499.7885 0.78849767 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 42.679 41.028 2 6.2562E-09 19977 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 167.97 131.63 173070000 39197000 30140000 30998000 0 0 0 12148000 0 13045000 0 0 0 0 7764000 8749900 0 0 0 10169000 10583000 10273000 0 0 0 9481 218 9248 176121;176122;176123;176124;176125;176126;176127;176128;176129;176130 108294;108295;108296;108297;108298 108297 4 IEQIFVNAPAGWRPR Unmodified 1752.9424 0.94237255 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 36.69 34.988 3 4.1666E-07 16864 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.28 115.74 973690000 195880000 162930000 176630000 0 0 0 0 61613000 64933000 2137800 1652500 0 41442000 43257000 37431000 0 0 0 64224000 59750000 61802000 0 0 0 9482 218 9249 176131;176132;176133;176134;176135;176136;176137;176138;176139;176140;176141;176142;176143 108299;108300;108301;108302;108303;108304;108305;108306 108304 5 IEQLEDKDWER Unmodified 1459.6943 0.69432251 457 P0A8T1 prmA Ribosomal protein L11 methyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 21.201 21.543 2;3 3.5524E-07 8925 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.95 117.02 721740000 57056000 21911000 40303000 0 0 0 69281000 64583000 65433000 0 0 0 54010000 54467000 49758000 0 0 0 81849000 92332000 70761000 0 0 0 9483 457 9250 176144;176145;176146;176147;176148;176149;176150;176151;176152;176153;176154;176155;176156;176157;176158;176159;176160;176161;176162;176163;176164;176165;176166 108307;108308;108309;108310;108311;108312;108313;108314;108315;108316;108317;108318;108319;108320;108321;108322 108308 16 IEQLEDKDWEREWMDNFHPMR Unmodified 2803.2483 0.24826891 457 P0A8T1 prmA Ribosomal protein L11 methyltransferase yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.115 41.483 5 0.10921 20050 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 27.72 27.593 106490000 8496600 0 0 0 0 0 10593000 9489800 11637000 0 0 2266900 6631000 8785100 6242500 0 0 0 13997000 17495000 10854000 0 0 0 9484 457 9251 176167;176168;176169;176170;176171;176172;176173;176174;176175;176176;176177 108323;108324 108324 2 IEQLFQQPHDGVTGVNTGYDDLNKK Unmodified 2815.3777 0.3776864 714 P0ACB0 dnaB Replicative DNA helicase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.199 29.692 4 0.11053 13907 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 26.789 23.933 72123000 0 11977000 12137000 0 0 0 5862700 8819000 6048000 0 2070700 0 0 5099300 4153000 0 0 0 0 4711300 5463800 0 0 5781200 9485 714 9252 176178;176179;176180;176181;176182;176183;176184;176185;176186;176187;176188 108325 108325 1 IEQLYPFPHK Unmodified 1270.671 0.67100829 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 28.877 27.413 2;3 5.0374E-05 13069 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 135.83 123.98 4102200000 381460000 341580000 301790000 5990800 6748300 8191400 201250000 192580000 176170000 7870200 4933200 6865100 293340000 262220000 236480000 0 0 0 517720000 555220000 539380000 23081000 22038000 17276000 9486 937 9253 176189;176190;176191;176192;176193;176194;176195;176196;176197;176198;176199;176200;176201;176202;176203;176204;176205;176206;176207;176208;176209;176210;176211;176212;176213;176214;176215;176216;176217;176218;176219;176220;176221;176222;176223;176224;176225;176226;176227;176228;176229 108326;108327;108328;108329;108330;108331;108332;108333;108334;108335;108336;108337;108338;108339;108340;108341;108342;108343;108344;108345;108346;108347;108348;108349;108350;108351;108352;108353;108354;108355;108356;108357;108358;108359;108360;108361;108362 108330 37 IEQMLSQDK Unmodified 1090.5329 0.53285983 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.88 16.696 2 1.3113E-05 5709 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 162.49 148.34 1129800000 90194000 86466000 76038000 0 0 0 89248000 111010000 107690000 0 0 0 88771000 85144000 87549000 0 0 0 104830000 101350000 101490000 0 0 0 9487 1137 9254 176230;176231;176232;176233;176234;176235;176236;176237;176238;176239;176240;176241 108363;108364;108365;108366;108367;108368 108365 6 IEQMLSQDKR Oxidation (M) 1262.6289 0.62888548 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 1 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.828 11.642 3 0.023061 2854 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 50.452 36.089 144160000 8317200 6011500 0 0 0 0 23158000 22231000 21250000 0 0 0 8740000 9059600 9353200 0 0 0 18786000 0 17257000 0 0 0 9488 1137 9255 176242;176243;176244;176245;176246;176247;176248;176249;176250;176251 108369 108369 496 1 IEQMLSQDKR Unmodified 1246.634 0.63397086 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.583 13.415 3 0.00085819 3896 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 70.942 41.006 1135500000 68789000 61482000 69654000 0 0 0 129590000 106810000 83932000 0 0 0 98423000 95480000 88614000 0 0 0 111990000 107800000 112910000 0 0 0 9489 1137 9255 176252;176253;176254;176255;176256;176257;176258;176259;176260;176261;176262;176263 108370;108371 108370 2 IEQQAAEQGWESLHR Unmodified 1780.8493 0.84926002 1118 P16384 miaA tRNA dimethylallyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.035 23.118 3 0.00013357 10131 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 75.463 69.431 157830000 24921000 18472000 18237000 701210 425540 535130 0 13220000 7737700 0 1404200 0 10976000 5968700 5395100 0 0 0 15637000 14184000 20012000 0 0 0 9490 1118 9256 176264;176265;176266;176267;176268;176269;176270;176271;176272;176273;176274;176275;176276;176277;176278 108372 108372 1 IEQSPELSAK Unmodified 1100.5714 0.57135383 628 P0AB46 ymgD Uncharacterized protein YmgD yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 14.414 15.202 2 0.0041032 4974 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 105.98 44.013 406940000 0 0 0 0 0 0 57243000 55505000 55851000 0 0 0 55799000 52251000 50256000 0 0 0 29388000 25893000 24758000 0 0 0 9491 628 9257 176279;176280;176281;176282;176283;176284;176285;176286;176287 108373;108374;108375 108374 0 IESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPAR Unmodified 4111.9341 0.93405887 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.868 51.489 4;5 4.5543E-38 25190 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 199.8 199.71 1944000000 134400000 141990000 136890000 0 0 0 190280000 158890000 158400000 0 0 0 148550000 146860000 119460000 0 0 0 220510000 213740000 174010000 0 0 0 9492 183 9258 176288;176289;176290;176291;176292;176293;176294;176295;176296;176297;176298;176299;176300;176301;176302;176303;176304;176305;176306;176307;176308;176309;176310;176311 108376;108377;108378;108379;108380;108381;108382;108383;108384;108385;108386 108376 11 IESLVTPAELALR Unmodified 1410.8082 0.80823006 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.607 44.168 2 6.7812E-09 21661 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.93 148.62 601740000 103760000 109760000 93473000 0 0 0 29095000 31036000 27804000 0 0 0 28068000 31073000 25168000 0 0 0 41078000 44885000 36544000 0 0 0 9493 44 9259 176312;176313;176314;176315;176316;176317;176318;176319;176320;176321;176322;176323 108387;108388;108389;108390;108391;108392;108393 108389 3 IESMGVR Unmodified 790.40072 0.40072345 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 13.077 13.931 2 0.068585 4336 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 59.641 24.44 128990000 31308000 0 0 0 0 0 24125000 22753000 23002000 0 0 0 8857400 0 7139300 0 0 0 3484900 3497800 4825400 0 0 0 9494 180 9260 176324;176325;176326;176327;176328;176329;176330;176331;176332 108394;108395 108394 2 IESMVANRPDWCISR Unmodified 1832.8662 0.86617242 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 30.192 28.755 2;3 3.766E-45 13437 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 273.24 247.11 4105600000 441020000 436200000 392440000 0 0 0 310860000 285230000 308270000 1091500 0 1050900 264370000 281500000 205630000 0 0 0 351330000 425160000 401460000 0 0 0 9495 58 9261 176333;176334;176335;176336;176337;176338;176339;176340;176341;176342;176343;176344;176345;176346;176347;176348;176349;176350;176351;176352;176353;176354;176355;176356;176357;176358 108396;108397;108398;108399;108400;108401;108402;108403;108404;108405;108406;108407;108408;108409;108410;108411;108412;108413;108414;108415;108416;108417;108418;108419 108409 24 IETGTFLVAAAISR Unmodified 1447.8035 0.80347903 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 3 2 2 2 2 46.49 45.018 2;3 7.3836E-11 21920 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.9 157.52 421340000 17871000 22758000 20943000 0 0 0 34200000 34363000 33278000 0 0 0 41718000 32545000 35233000 0 0 0 49512000 53887000 45030000 0 0 0 9496 311 9262 176359;176360;176361;176362;176363;176364;176365;176366;176367;176368;176369;176370;176371;176372;176373;176374;176375;176376;176377;176378;176379;176380;176381;176382 108420;108421;108422;108423;108424;108425;108426;108427;108428;108429;108430 108425 10 IETHLEDMVAQANAQLK Unmodified 1909.9568 0.95676156 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 2 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 1 1 1 1 37.746 36.013 2;3 3.6659E-24 14236 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 208.95 198.76 352160000 0 11303000 7093800 3326500 3433500 3375700 23488000 27992000 24606000 36891000 32547000 33444000 19309000 17544000 21527000 2281900 3122500 2565600 22175000 19264000 17816000 6011500 7838700 5205100 9497 1944 9263 176383;176384;176385;176386;176387;176388;176389;176390;176391;176392;176393;176394;176395;176396;176397;176398;176399;176400;176401;176402;176403;176404;176405;176406;176407;176408;176409;176410;176411;176412;176413;176414;176415;176416 108431;108432;108433;108434;108435 108434 4 IETLFTNDLDHGPYISETLR Unmodified 2333.1539 0.15394104 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 5 9 5 2 2 2 8 11 10 2 2 2 7 4 7 47.156 46.026 2;3;4 1.1864E-81 22314 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 364.06 338.74 55828000000 521790000 487730000 471810000 22113000 21135000 21453000 400060000 336470000 370790000 3096800000 2733500000 2389900000 408740000 365210000 474520000 12411000000 10402000000 10317000000 521450000 550380000 470180000 2980500000 2999800000 3053500000 9498 463 9264 176417;176418;176419;176420;176421;176422;176423;176424;176425;176426;176427;176428;176429;176430;176431;176432;176433;176434;176435;176436;176437;176438;176439;176440;176441;176442;176443;176444;176445;176446;176447;176448;176449;176450;176451;176452;176453;176454;176455;176456;176457;176458;176459;176460;176461;176462;176463;176464;176465;176466;176467;176468;176469;176470;176471;176472;176473;176474;176475;176476;176477;176478;176479;176480;176481;176482;176483;176484;176485;176486;176487;176488;176489;176490;176491;176492;176493;176494;176495;176496;176497;176498;176499;176500;176501;176502;176503;176504;176505;176506;176507;176508;176509;176510 108436;108437;108438;108439;108440;108441;108442;108443;108444;108445;108446;108447;108448;108449;108450;108451;108452;108453;108454;108455;108456;108457;108458;108459;108460;108461;108462;108463;108464;108465;108466;108467;108468;108469;108470;108471;108472;108473;108474;108475;108476;108477;108478;108479;108480;108481;108482;108483;108484;108485;108486;108487;108488;108489;108490;108491;108492;108493;108494;108495;108496;108497;108498;108499;108500;108501;108502;108503;108504;108505;108506;108507;108508;108509;108510;108511;108512;108513;108514;108515;108516;108517;108518;108519;108520;108521;108522;108523;108524;108525;108526;108527;108528;108529;108530 108487 85 IETLFTNDLDHGPYISETLRVDPTNDR Unmodified 3130.5207 0.52072183 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 3 3 2 45.855 44.649 3;4 5.5767E-53 17572 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 233.28 227.32 4195000000 0 0 0 0 0 0 0 0 0 144630000 103550000 117500000 0 0 0 1141100000 798440000 878450000 0 0 0 334320000 316460000 360560000 9499 463 9265 176511;176512;176513;176514;176515;176516;176517;176518;176519;176520;176521;176522;176523;176524;176525;176526;176527;176528;176529;176530;176531;176532;176533 108531;108532;108533;108534;108535;108536;108537;108538;108539;108540;108541;108542;108543;108544;108545;108546;108547;108548;108549;108550;108551;108552;108553;108554 108547 24 IETLVPDFR Unmodified 1088.5866 0.58660996 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.337 37.732 2 1.0639E-07 14669 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 182.39 178.45 2070700000 144750000 151740000 139520000 38975000 43154000 41468000 132760000 126490000 137780000 8612600 8395400 8046000 142690000 129350000 131080000 7705600 3934300 4207900 0 207470000 229140000 80884000 75608000 76893000 9500 1628 9266 176534;176535;176536;176537;176538;176539;176540;176541;176542;176543;176544;176545;176546;176547;176548;176549;176550;176551;176552;176553;176554;176555;176556;176557 108555;108556;108557;108558;108559;108560;108561;108562;108563;108564;108565;108566;108567;108568;108569;108570;108571 108559 15 IETMLGMAPNTLK Unmodified 1417.7309 0.73090771 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 38.279 36.765 2 1.373E-05 17875 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 113.47 105.55 588760000 171540000 94006000 144860000 0 0 0 0 0 0 0 0 0 21274000 22115000 20540000 0 0 0 40758000 37867000 35809000 0 0 0 9501 1465 9267 176558;176559;176560;176561;176562;176563;176564;176565;176566 108572;108573;108574 108573 1 IEVATPLLDPR Unmodified 1222.6921 0.69213767 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.808 37.345 2 0.024674 13143 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 71.451 66.485 68547000 0 13785000 0 1458000 2118700 1321200 8196000 9344700 7444000 2598100 0 0 2545700 2437700 2527500 1710700 1216500 1727400 3277200 3747000 3091300 0 0 0 9502 326 9268 176567;176568;176569;176570;176571;176572;176573;176574;176575;176576;176577;176578;176579;176580;176581;176582;176583 108575;108576;108577 108576 0 IEVEDFPAFILVDDK Unmodified 1748.8873 0.88726824 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.07 53.646 2 8.1473E-06 25435 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 119.25 110.2 1165900000 168110000 190420000 183920000 0 0 0 0 0 0 0 0 0 106010000 107030000 107230000 0 0 0 100840000 106210000 96126000 0 0 0 9503 696;1097 9269 176584;176585;176586;176587;176588;176589;176590;176591;176592 108578 108578 1 IEVEDFPAFILVDDKGNDFFQQIQLTQCTR Unmodified 3585.745 0.74498446 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.232 53.784 3 5.0539E-18 26648 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.16 152.4 310460000 51939000 53969000 42897000 0 0 0 0 12899000 0 0 0 0 16125000 16766000 14960000 0 0 0 34676000 33605000 32621000 0 0 0 9504 696 9270 176593;176594;176595;176596;176597;176598;176599;176600;176601;176602 108579;108580 108580 2 IEVLVER Unmodified 856.50182 0.5018177 341 P0A7F9 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.56 22.839 2 0.0019731 10207 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 120.52 38.259 238580000 18042000 15462000 17518000 0 0 0 19312000 23067000 16826000 0 0 0 17231000 16210000 13492000 0 0 0 28852000 25367000 27196000 0 0 0 9505 341 9271 176603;176604;176605;176606;176607;176608;176609;176610;176611;176612;176613;176614 108581;108582;108583 108582 3 IEVNGEGR Unmodified 872.43519 0.4351947 123 P06610 btuE Vitamin B12 transport periplasmic protein BtuE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.197 12.68 2 0.0016218 3473 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.32 35.297 218650000 33253000 36064000 27189000 0 0 0 22115000 22205000 19612000 2015300 593510 0 0 0 0 10230000 7580800 8600800 15362000 0 13826000 0 0 0 9506 123 9272 176615;176616;176617;176618;176619;176620;176621;176622;176623;176624;176625;176626;176627 108584;108585;108586 108586 3 IEVPEIGEEVIEIK Unmodified 1595.8658 0.86580451 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 2 3 2 2 2 3 2 3 2 2 2 2 3 3 49.894 48.721 2;3 3.3025E-11 19425 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 180.2 165.52 15476000000 246210000 224760000 194900000 4058300 3662300 3826400 89565000 92470000 91636000 755160000 734820000 684230000 160290000 165110000 12952000 1929900000 2242000000 2479600000 164880000 170740000 172920000 1639100000 1645900000 1567200000 9507 935 9273 176628;176629;176630;176631;176632;176633;176634;176635;176636;176637;176638;176639;176640;176641;176642;176643;176644;176645;176646;176647;176648;176649;176650;176651;176652;176653;176654;176655;176656;176657;176658;176659;176660;176661;176662;176663;176664;176665;176666;176667;176668;176669;176670;176671;176672;176673;176674;176675;176676 108587;108588;108589;108590;108591;108592;108593;108594;108595;108596;108597;108598;108599;108600;108601;108602;108603;108604;108605;108606;108607;108608;108609;108610;108611;108612;108613;108614;108615;108616;108617;108618;108619;108620;108621;108622;108623;108624;108625;108626;108627;108628;108629;108630;108631;108632 108597 42 IEVPEVLR Unmodified 953.55458 0.55458155 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.913 33.456 2 0.0017625 15258 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 106.14 66.038 71317000 4197800 4093500 3197600 0 0 0 8154100 6968100 8139100 0 0 0 7261100 4403100 5280200 0 0 0 5915500 6861900 6844500 0 0 0 9508 441 9274 176677;176678;176679;176680;176681;176682;176683;176684;176685;176686;176687;176688 108633;108634;108635;108636;108637 108637 5 IEVTIAK Unmodified 772.46945 0.46945494 673 P0ABR1 dinI DNA-damage-inducible protein I yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.212 19.761 2 0.0023307 7176 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 114.19 20.022 125560000 6140600 8031900 4577400 0 0 0 13321000 13869000 15068000 0 0 0 10139000 7880900 7393100 0 0 0 12401000 12752000 13981000 0 0 0 9509 673 9275 176689;176690;176691;176692;176693;176694;176695;176696;176697;176698;176699;176700 108638;108639 108639 2 IEVVIANNDAMAMGAVEALK Unmodified 2058.0489 0.048947388 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 51.199 49.972 2 4.136E-13 24240 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.32 171.04 89608000 28698000 21094000 21176000 0 0 0 0 0 0 0 0 0 2375200 1553300 3885400 0 0 0 3877700 0 0 6947300 0 0 9510 852 9276 176701;176702;176703;176704;176705;176706;176707;176708;176709 108640;108641;108642 108641 3 IEYAINR Unmodified 877.46577 0.46576654 1957 Q46845 yghU Disulfide-bond oxidoreductase YghU yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.053 18.588 2 0.0019075 6848 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.68 65.174 756230000 125810000 111320000 92042000 239130 0 0 70801000 66887000 91917000 552770 0 0 24224000 20156000 22351000 0 0 0 42713000 39335000 47878000 0 0 0 9511 1957 9277 176710;176711;176712;176713;176714;176715;176716;176717;176718;176719;176720;176721;176722;176723 108643;108644 108643 2 IEYLGGCVNEMPYVLAVEK Unmodified 2183.0643 0.064263101 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 3 3 3 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 51.774 50.543 2;3 3.8762E-18 24912 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 177.88 163.32 973120000 43414000 40351000 36625000 4253200 3213300 3113700 82662000 78527000 79497000 12142000 6282100 13686000 79077000 83406000 76165000 3149400 1557400 1448400 109260000 94202000 97679000 8134500 8319600 6952200 9512 1426 9278 176724;176725;176726;176727;176728;176729;176730;176731;176732;176733;176734;176735;176736;176737;176738;176739;176740;176741;176742;176743;176744;176745;176746;176747;176748;176749;176750;176751;176752;176753;176754;176755;176756;176757;176758;176759;176760;176761;176762;176763;176764;176765;176766;176767;176768;176769;176770 108645;108646;108647;108648;108649;108650;108651;108652;108653;108654;108655;108656;108657;108658;108659;108660;108661;108662;108663;108664 108650 20 IEYTESTSAAMEK Unmodified 1458.6548 0.65482546 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 19.278 19.831 2 7.2903E-07 7639 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 161.62 157.86 255810000 55814000 56930000 53373000 2126500 2183200 2561700 6379800 6560700 5374800 0 0 0 12395000 13624000 8809300 0 0 0 9329000 11338000 9013200 0 0 0 9513 529 9279 176771;176772;176773;176774;176775;176776;176777;176778;176779;176780;176781;176782;176783;176784;176785;176786 108665;108666;108667;108668;108669;108670;108671;108672;108673;108674;108675;108676;108677;108678;108679 108667 13 IEYVYQSAEQLR Unmodified 1497.7464 0.74635808 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 1 1 1 1 30.963 29.532 2;3 1.4568E-23 14032 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 241.13 220.82 1076100000 308040000 256860000 251750000 0 0 0 54426000 45435000 37049000 0 0 0 19494000 18685000 17578000 0 0 0 21560000 23555000 21677000 0 0 0 9514 1160 9280 176787;176788;176789;176790;176791;176792;176793;176794;176795;176796;176797;176798;176799;176800 108680;108681;108682;108683;108684;108685;108686;108687;108688;108689;108690;108691;108692 108683 13 IFADLGAWQIAQLAR Unmodified 1671.9097 0.90967544 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 1 2 2 1 2 2 2 2 2 2 2 1 2 2 54.497 53.063 2;3 5.7741E-20 25070 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 260.98 249.12 1438000000 114740000 152920000 131550000 1818300 1194800 1795800 96790000 15802000 88693000 9993900 7004600 7467700 129780000 129010000 103560000 0 0 0 136310000 152230000 125090000 10886000 10998000 10414000 9515 651 9281 176801;176802;176803;176804;176805;176806;176807;176808;176809;176810;176811;176812;176813;176814;176815;176816;176817;176818;176819;176820;176821;176822;176823;176824;176825;176826;176827;176828;176829;176830;176831;176832;176833;176834;176835;176836 108693;108694;108695;108696;108697;108698;108699;108700;108701;108702;108703;108704;108705;108706;108707;108708;108709 108707 12 IFAGGDIVR Unmodified 946.52362 0.52361577 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 2 2 26.493 25.44 2 0.00043569 11420 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.31 92.324 1236000000 231790000 220340000 208120000 0 0 0 139470000 133550000 0 0 0 0 48853000 47213000 53045000 0 0 0 73570000 0 80085000 0 0 0 9516 219 9282 176837;176838;176839;176840;176841;176842;176843;176844;176845;176846;176847;176848;176849;176850;176851 108710;108711;108712;108713;108714;108715;108716;108717 108714 8 IFALPVIEQISPVLSR Unmodified 1781.0451 0.045106284 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.101 53.628 2 6.9797E-24 26392 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 212.89 212.89 1811400000 98618000 118510000 100990000 0 0 0 201240000 185450000 182750000 0 0 0 140360000 135460000 129810000 0 0 0 187050000 171550000 159590000 0 0 0 9517 1510 9283 176852;176853;176854;176855;176856;176857;176858;176859;176860;176861;176862;176863 108718;108719;108720;108721;108722;108723;108724;108725;108726;108727;108728;108729 108722 12 IFANPHLPGIDDYYEPFDFDYQNLHTAPEGSK Unmodified 3709.7001 0.70014275 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 2 2 1 2 2 1 2 2 1 2 1 2 2 2 2 50.903 49.608 3;4 6.4593E-25 19681 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 161.04 159.76 2762300000 64319000 48782000 43558000 14594000 14686000 12850000 151410000 111700000 121310000 61154000 77370000 71547000 148560000 149360000 149410000 15824000 0 0 267260000 235350000 253750000 255120000 266780000 227600000 9518 1067 9284 176864;176865;176866;176867;176868;176869;176870;176871;176872;176873;176874;176875;176876;176877;176878;176879;176880;176881;176882;176883;176884;176885;176886;176887;176888;176889;176890;176891;176892;176893;176894;176895;176896;176897;176898 108730;108731;108732;108733;108734;108735;108736;108737;108738;108739;108740;108741;108742;108743;108744;108745;108746;108747;108748;108749;108750;108751;108752;108753;108754 108736 25 IFAQHQPDAVMHLAAESHVDR Unmodified 2371.1491 0.14914721 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 25.838 24.766 3;4;5 1.3382E-21 11095 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 159.14 155.04 3224700000 147280000 109370000 129920000 0 0 0 283840000 291450000 262700000 0 0 0 266860000 262620000 266800000 0 0 0 394550000 413830000 395480000 0 0 0 9519 1496 9285 176899;176900;176901;176902;176903;176904;176905;176906;176907;176908;176909;176910;176911;176912;176913;176914;176915;176916;176917;176918;176919;176920;176921;176922;176923;176924;176925;176926;176927;176928;176929;176930;176931;176932;176933;176934 108755;108756;108757;108758;108759;108760;108761;108762;108763;108764;108765;108766;108767;108768;108769;108770;108771;108772;108773;108774;108775;108776;108777;108778;108779;108780;108781;108782;108783;108784;108785;108786;108787;108788;108789;108790 108769 36 IFDFPLR Unmodified 906.49634 0.49633839 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.432 42.755 2 0.00045564 20613 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.67 43.791 1936800000 168960000 158210000 134060000 2249900 1883000 941620 227320000 227030000 214300000 1955700 1758300 1841100 142320000 115900000 103820000 0 0 0 142420000 148410000 143400000 0 0 0 9520 681 9286 176935;176936;176937;176938;176939;176940;176941;176942;176943;176944;176945;176946;176947;176948;176949;176950;176951;176952 108791;108792;108793;108794;108795;108796;108797;108798;108799;108800;108801;108802 108799 12 IFDFVKPGVITGDDVQK Unmodified 1876.9935 0.99346464 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 41.503 39.712 2;3 4.2974E-19 19639 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 224.16 205.03 42704000000 3313600000 2927900000 2712000000 13401000 12997000 13120000 4424500000 4617400000 4129400000 14336000 10264000 9795300 3294300000 2937500000 3271300000 0 0 0 3636900000 3620100000 3721900000 7336400 8655500 7088700 9521 634 9287 176953;176954;176955;176956;176957;176958;176959;176960;176961;176962;176963;176964;176965;176966;176967;176968;176969;176970;176971;176972;176973;176974;176975;176976;176977;176978;176979;176980;176981;176982;176983;176984;176985;176986;176987 108803;108804;108805;108806;108807;108808;108809;108810;108811;108812;108813;108814;108815;108816;108817;108818;108819;108820;108821;108822;108823;108824;108825;108826;108827;108828;108829;108830;108831;108832;108833;108834;108835;108836;108837;108838;108839;108840;108841;108842 108812 40 IFDYALEQAGNPDR Unmodified 1607.758 0.7579854 471 P0A8Y1 yjjG Pyrimidine 5'-nucleotidase YjjG yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.473 35.019 2 2.2233E-14 16851 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.72 177.53 105200000 0 0 0 0 0 0 0 0 0 0 0 0 11813000 13171000 13969000 0 0 0 24617000 23552000 18084000 0 0 0 9522 471 9288 176988;176989;176990;176991;176992;176993 108843;108844;108845;108846 108843 4 IFDYLVSSDVEHR Unmodified 1578.7678 0.7678218 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 2 2 2 1 1 1 1 1 2 2 1 1 2 2 2 36.056 34.305 2;3 8.742E-07 16508 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 167.12 149.89 420660000 0 0 0 4204400 3530200 4206000 14242000 72202000 10734000 36973000 35235000 25982000 6776400 1603400 8675900 0 6536900 5361000 86247000 12213000 9907700 24419000 26147000 25461000 9523 1492 9289 176994;176995;176996;176997;176998;176999;177000;177001;177002;177003;177004;177005;177006;177007;177008;177009;177010;177011;177012;177013;177014;177015;177016;177017;177018;177019;177020;177021;177022;177023;177024 108847;108848;108849;108850;108851;108852;108853;108854;108855;108856;108857;108858;108859;108860;108861;108862;108863;108864 108864 18 IFEAAELSHQTNTLPEVCGR Unmodified 2271.0954 0.095380308 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 1 2 2 2 2 34.782 33.307 2;3 4.1335E-68 15972 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 368.94 358.82 1821900000 388290000 330820000 327110000 2061100 1756000 2190200 126260000 97540000 125040000 0 0 0 72625000 52775000 57235000 0 0 0 74026000 90093000 74037000 0 0 0 9524 219 9290 177025;177026;177027;177028;177029;177030;177031;177032;177033;177034;177035;177036;177037;177038;177039;177040;177041;177042;177043;177044;177045;177046;177047;177048;177049;177050 108865;108866;108867;108868;108869;108870;108871;108872 108868 8 IFEALESALATATK Unmodified 1463.7872 0.78716026 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 2 2 3 52.99 51.822 2;3 1.6923E-11 19545 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 172.57 163.52 9723100000 237000000 227430000 201770000 0 0 3848600 99629000 103580000 108620000 389440000 382740000 395080000 184240000 187480000 177570000 1352600000 1051700000 1465200000 165190000 186960000 188440000 818930000 928370000 867260000 9525 935 9291 177051;177052;177053;177054;177055;177056;177057;177058;177059;177060;177061;177062;177063;177064;177065;177066;177067;177068;177069;177070;177071;177072;177073;177074;177075;177076;177077;177078;177079;177080;177081;177082;177083;177084;177085;177086;177087;177088;177089;177090;177091;177092;177093;177094;177095;177096;177097 108873;108874;108875;108876;108877;108878;108879;108880;108881;108882;108883;108884;108885;108886;108887;108888;108889;108890;108891;108892;108893;108894;108895;108896;108897;108898;108899;108900;108901;108902;108903;108904;108905;108906;108907;108908;108909;108910;108911;108912;108913;108914;108915;108916;108917;108918;108919 108879 46 IFEALESALATATKK Unmodified 1591.8821 0.88212328 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 2 2 3 2 2 2 46.634 45.197 2;3 2.3752E-11 17074 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 203.51 197.54 1446200000 0 0 0 0 0 0 0 0 0 88529000 86041000 96867000 0 0 0 264360000 200920000 240950000 0 0 0 143120000 178800000 146560000 9526 935 9292 177098;177099;177100;177101;177102;177103;177104;177105;177106;177107;177108;177109;177110;177111;177112;177113;177114;177115;177116;177117;177118;177119;177120;177121;177122 108920;108921;108922;108923;108924;108925;108926;108927;108928;108929;108930;108931;108932;108933;108934;108935;108936;108937;108938;108939 108922 20 IFEANKPMLK Oxidation (M) 1205.6478 0.64783001 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 2 2 1 2 1 1 1 16.014 16.649 2;3 0.00025547 5733 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.06 118.06 437190000 77705000 92486000 78137000 14541000 18154000 16581000 24729000 36963000 29392000 6843200 19244000 14037000 0 4177200 0 0 0 0 0 0 0 0 0 4201000 9527 783 9293 177123;177124;177125;177126;177127;177128;177129;177130;177131;177132;177133;177134;177135;177136;177137;177138;177139;177140;177141;177142;177143;177144;177145 108940;108941;108942;108943;108944;108945;108946;108947;108948;108949 108949 386 10 IFEANKPMLK Unmodified 1189.6529 0.65291539 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 1 2 2 2 1 1 1 1 1 1 1 1 1 18.884 19.286 2;3 5.5387E-05 7260 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 144.09 126.85 8319300000 1763700000 1838200000 1637500000 445150000 427910000 423000000 0 0 411720000 145560000 137890000 127560000 143540000 138150000 131950000 11790000 11463000 12400000 152610000 154340000 145710000 19698000 21397000 18051000 9528 783 9293 177146;177147;177148;177149;177150;177151;177152;177153;177154;177155;177156;177157;177158;177159;177160;177161;177162;177163;177164;177165;177166;177167;177168;177169;177170;177171;177172;177173;177174;177175;177176;177177 108950;108951;108952;108953;108954;108955;108956;108957;108958;108959;108960;108961;108962;108963;108964;108965;108966;108967;108968;108969;108970;108971;108972;108973;108974;108975 108967 25 IFEDNSLTIGHTPLVR Unmodified 1810.9577 0.95774784 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 2 2 2 2 1 2 2 2 2 3 1 1 1 2 2 3 1 1 1 37.093 35.417 2;3 8.3389E-24 17015 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 246.26 222.88 28293000000 2963200000 2884400000 2778800000 14813000 16327000 13072000 2524600000 2714600000 2333900000 18101000 16353000 13285000 1609700000 1505400000 1611400000 4964200 4255100 3984000 2562400000 2436000000 2241700000 7469100 7132100 7354100 9529 666 9294 177178;177179;177180;177181;177182;177183;177184;177185;177186;177187;177188;177189;177190;177191;177192;177193;177194;177195;177196;177197;177198;177199;177200;177201;177202;177203;177204;177205;177206;177207;177208;177209;177210;177211;177212;177213;177214;177215;177216;177217;177218;177219;177220;177221 108976;108977;108978;108979;108980;108981;108982;108983;108984;108985;108986;108987;108988;108989;108990;108991;108992;108993;108994;108995;108996;108997;108998;108999;109000;109001;109002;109003;109004;109005;109006;109007;109008;109009 109002 34 IFEIYPPKPLHSIALGSR Unmodified 2037.1411 0.14113193 1538 P39407 yjjU Uncharacterized protein YjjU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 39.264 37.002 4 5.376E-06 17824 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.565 88.49 52681000 0 7257800 0 0 0 0 0 19462000 0 8761000 7949100 9251000 0 0 0 0 0 0 0 0 0 0 0 0 9530 1538 9295 177222;177223;177224;177225;177226 109010;109011;109012;109013;109014 109014 5 IFESGLR Unmodified 820.4443 0.44430282 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 20.771 21.188 2 0.0007365 8589 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 146.21 36.332 2488200000 235240000 241540000 197650000 0 1975800 0 0 0 217070000 0 0 0 250640000 220500000 248090000 0 0 0 289830000 280430000 305200000 0 0 0 9531 161 9296 177227;177228;177229;177230;177231;177232;177233;177234;177235;177236;177237 109015;109016;109017;109018;109019;109020;109021;109022 109016 8 IFETNHAFSIESDSGVELFVHFGIDTVELK Unmodified 3379.6612 0.66123805 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.561 53.139 4 1.4328E-17 19469 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 163.76 161.6 912540000 54387000 55125000 67551000 36824000 25176000 15975000 83065000 74687000 89472000 0 0 0 62382000 66061000 55977000 0 0 0 81089000 69401000 75365000 0 0 0 9532 1741 9297 177238;177239;177240;177241;177242;177243;177244;177245;177246;177247;177248;177249;177250;177251;177252 109023;109024;109025;109026;109027;109028;109029;109030;109031;109032 109027 10 IFGDWLCETAAK Unmodified 1409.6649 0.66493664 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.379 43.966 2 1.9285E-06 17636 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 145.25 135.47 466870000 27075000 24581000 22185000 5411100 4840000 5738500 29815000 34583000 31400000 14511000 12015000 13648000 26889000 26894000 23646000 4557100 2634300 3165000 45237000 41075000 35577000 11386000 10208000 9796300 9533 1909 9298 177253;177254;177255;177256;177257;177258;177259;177260;177261;177262;177263;177264;177265;177266;177267;177268;177269;177270;177271;177272;177273;177274;177275;177276 109033;109034;109035;109036;109037;109038;109039;109040;109041;109042;109043;109044;109045;109046;109047;109048 109035 15 IFGEHPQR Unmodified 982.49846 0.49846366 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.103 12.702 2 0.00091102 2950 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 117.93 89.827 249640000 19330000 15441000 0 5928400 5611900 5357200 14967000 16036000 17620000 10458000 9299100 8233800 0 0 7949700 2461300 703760 0 30369000 29378000 23047000 8773600 9097900 9579900 9534 1094 9299 177277;177278;177279;177280;177281;177282;177283;177284;177285;177286;177287;177288;177289;177290;177291;177292;177293;177294;177295;177296;177297 109049;109050;109051;109052;109053;109054;109055;109056;109057;109058 109051 10 IFGPGNAFVTEAK Unmodified 1349.698 0.69795133 140 P06988 hisD Histidinol dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 35.655 34.241 2 2.2788E-05 16537 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.83 109.05 231380000 45057000 42601000 37629000 0 0 0 0 0 0 0 0 0 14213000 15428000 15460000 0 0 0 19295000 19837000 21863000 0 0 0 9535 140 9300 177298;177299;177300;177301;177302;177303;177304;177305;177306;177307;177308 109059;109060;109061;109062;109063;109064;109065;109066;109067 109061 5 IFGPTAGAAQLEGSK Unmodified 1445.7514 0.75144346 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.555 28.26 2 2.1317E-08 12987 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 158.42 145.61 658970000 169000000 161090000 165750000 494900 481870 608660 14616000 13713000 12420000 0 0 0 15620000 15233000 13453000 0 0 0 26590000 26020000 23878000 0 0 0 9536 1112 9301 177309;177310;177311;177312;177313;177314;177315;177316;177317;177318;177319;177320;177321;177322;177323 109068;109069;109070;109071;109072;109073;109074 109072 7 IFGPVKDYECLCGK Unmodified 1684.7953 0.79529888 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 2 2 2 2 5 9 6 2 2 2 10 9 10 2 2 2 5 7 6 31.51 30.197 2;3;4 5.3388E-15 9917 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 200.82 195.33 43721000000 176300000 155880000 161150000 4178700 4085500 5085200 133190000 118260000 126380000 2594900000 2831500000 2862000000 126100000 102710000 100790000 9403700000 6515200000 7130100000 184280000 179070000 172700000 3465300000 3494600000 3673600000 9537 458 9302 177324;177325;177326;177327;177328;177329;177330;177331;177332;177333;177334;177335;177336;177337;177338;177339;177340;177341;177342;177343;177344;177345;177346;177347;177348;177349;177350;177351;177352;177353;177354;177355;177356;177357;177358;177359;177360;177361;177362;177363;177364;177365;177366;177367;177368;177369;177370;177371;177372;177373;177374;177375;177376;177377;177378;177379;177380;177381;177382;177383;177384;177385;177386;177387;177388;177389;177390;177391;177392;177393;177394;177395;177396;177397;177398;177399;177400;177401;177402;177403;177404;177405;177406;177407;177408;177409;177410;177411;177412;177413;177414;177415;177416;177417;177418;177419 109075;109076;109077;109078;109079;109080;109081;109082;109083;109084;109085;109086;109087;109088;109089;109090;109091;109092;109093;109094;109095;109096;109097;109098;109099;109100;109101;109102;109103;109104;109105;109106;109107;109108;109109;109110;109111;109112;109113;109114;109115;109116;109117;109118;109119;109120;109121;109122;109123;109124;109125;109126;109127;109128;109129;109130;109131;109132;109133;109134;109135;109136;109137;109138;109139;109140;109141;109142;109143;109144;109145;109146;109147;109148;109149;109150;109151;109152;109153;109154;109155;109156;109157;109158;109159 109076 84 IFGPVTR Unmodified 788.45447 0.45447358 820 P0ADY3 rplN 50S ribosomal protein L14 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.499 20.922 2 0.021102 8662 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 76.035 59.108 6278600000 752390000 786640000 687660000 0 0 0 315490000 280580000 311390000 0 0 0 449720000 414860000 401100000 0 0 0 588670000 631040000 659050000 0 0 0 9538 820 9303 177420;177421;177422;177423;177424;177425;177426;177427;177428;177429;177430;177431 109160;109161 109160 2 IFHHQPLTVVK Unmodified 1317.7557 0.75574098 1099 P15028 fecB Fe(3+) dicitrate-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 14.182 14.988 2 3.3863E-10 4879 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.42 129.04 25333000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3166300 0 0 0 9561400 0 12605000 0 0 0 9539 1099 9304 177432;177433;177434;177435;177436 109162;109163;109164;109165 109164 4 IFKDDAEALGK Unmodified 1205.6292 0.62920306 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.524 17.993 3 0.05726 5401 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 34.501 29.196 67070000 0 0 0 6515700 4504600 4623400 5594500 6251500 8901300 0 2902400 3078100 0 5557500 4670900 0 0 0 0 0 6300700 2573300 3427900 2168500 9540 1393 9305 177437;177438;177439;177440;177441;177442;177443;177444;177445;177446;177447;177448;177449;177450 109166;109167 109166 2 IFLAGGER Unmodified 861.47085 0.47085192 1530 P39356 yjhU Uncharacterized transcriptional regulator YjhU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.09 21.834 2 0.016212 7419 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 68.915 24.304 75802000 12290000 11177000 8536200 3447900 2880800 0 0 6903900 0 3318200 2961300 3253200 0 4284100 3791400 1103400 610210 934540 0 0 0 4388400 2435900 3486200 9541 1530 9306 177451;177452;177453;177454;177455;177456;177457;177458;177459;177460;177461;177462;177463;177464;177465;177466;177467 109168 109168 1 IFLDASSEER Unmodified 1165.5615 0.56151742 247 P0A6I0 cmk Cytidylate kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.576 25.355 2 9.0124E-06 10993 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 154.49 151.08 817170000 70280000 57290000 58095000 2029900 1808600 1615700 51302000 34880000 38763000 1723600 1434300 2673100 66824000 69257000 64859000 0 0 0 96121000 97695000 100510000 0 0 0 9542 247 9307 177468;177469;177470;177471;177472;177473;177474;177475;177476;177477;177478;177479;177480;177481;177482;177483;177484;177485 109169;109170;109171;109172;109173;109174;109175;109176;109177;109178;109179;109180 109178 7 IFLEGECVVTNSR Unmodified 1522.745 0.74497787 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.847 32.407 2 2.2428E-17 15426 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 209.1 202.99 255170000 14198000 11466000 9413400 0 0 0 21472000 19512000 20508000 0 0 0 22644000 21063000 25788000 0 0 0 30469000 27401000 31234000 0 0 0 9543 1307 9308 177486;177487;177488;177489;177490;177491;177492;177493;177494;177495;177496;177497 109181;109182;109183;109184;109185;109186;109187;109188;109189;109190;109191 109184 11 IFMAPLTR Unmodified 947.52626 0.52625831 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.624 32.184 2 0.00092909 14514 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 117.17 107.18 695280000 19118000 19735000 14739000 0 0 0 69064000 75746000 79385000 0 0 0 78880000 68089000 59229000 0 0 0 68421000 67374000 75499000 0 0 0 9544 1890 9309 177498;177499;177500;177501;177502;177503;177504;177505;177506;177507;177508;177509 109192;109193;109194;109195;109196;109197;109198;109199 109199 7 IFMGLATIFLER Unmodified 1409.7741 0.77409316 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 55.401 53.94 2;3 1.0147E-16 26706 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 205.83 195.3 6530400000 788330000 771220000 754120000 4995700 6640500 6064500 223100000 225280000 205380000 4739000 4917500 4278000 371070000 382970000 366980000 0 0 0 851370000 771090000 769640000 7313900 4508800 6373300 9545 392 9310 177510;177511;177512;177513;177514;177515;177516;177517;177518;177519;177520;177521;177522;177523;177524;177525;177526;177527;177528;177529;177530;177531;177532;177533;177534;177535;177536;177537;177538;177539;177540;177541;177542 109200;109201;109202;109203;109204;109205;109206;109207;109208;109209;109210;109211;109212;109213;109214;109215;109216;109217;109218;109219 109213 20 IFMITEPDGTFITAR Unmodified 1710.8651 0.86509301 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.852 49.555 2 0.026495 24597 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.574 60.397 270000000 33641000 33777000 29663000 0 0 0 15758000 15878000 17613000 0 0 0 19341000 17998000 16845000 0 0 0 21615000 24309000 23560000 0 0 0 9546 1784 9311 177543;177544;177545;177546;177547;177548;177549;177550;177551;177552;177553;177554 109220 109220 0 IFNADWVIDGEQQPK Unmodified 1758.8577 0.85769944 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 44.184 42.714 2 1.6977E-11 20956 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 209.19 195.38 354380000 87156000 81608000 77082000 0 0 0 0 10338000 6778000 0 0 0 12758000 11650000 10954000 0 0 0 19024000 21304000 15728000 0 0 0 9547 1107 9312 177555;177556;177557;177558;177559;177560;177561;177562;177563;177564;177565 109221;109222;109223;109224;109225;109226 109223 6 IFNAVVAYGCELK Unmodified 1482.7541 0.754086 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 40.509 38.842 2;3 2.8146E-06 18097 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 131.83 110.83 592000000 46485000 42218000 39002000 0 0 412530 78090000 67491000 69397000 0 0 0 35925000 38460000 31850000 0 0 0 50307000 46625000 45736000 0 0 0 9548 1778 9313 177566;177567;177568;177569;177570;177571;177572;177573;177574;177575;177576;177577;177578;177579;177580;177581;177582;177583;177584;177585;177586;177587;177588;177589;177590 109227;109228;109229;109230;109231;109232;109233;109234;109235;109236;109237;109238 109237 12 IFNDLLR Unmodified 889.50215 0.50215205 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.881 34.296 2 0.00066643 16495 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 148.07 79.675 254980000 22019000 24029000 21276000 567130 0 0 26203000 21370000 25811000 0 0 0 14858000 14939000 17350000 0 0 0 23568000 21005000 21357000 0 0 628460 9549 1966 9314 177591;177592;177593;177594;177595;177596;177597;177598;177599;177600;177601;177602;177603;177604 109239;109240;109241;109242;109243;109244;109245;109246;109247 109239 9 IFNTLTR Unmodified 863.4865 0.48650199 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.102 22.053 2 0.0010319 9420 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.37 112.26 1067000000 92972000 83942000 75002000 396130 468270 0 79318000 73193000 87459000 0 0 0 80594000 72870000 80311000 0 0 0 114340000 112930000 113230000 0 0 0 9550 1188 9315 177605;177606;177607;177608;177609;177610;177611;177612;177613;177614;177615;177616;177617;177618 109248;109249;109250;109251;109252;109253;109254 109249 7 IFNTNHAFCLETEK Unmodified 1722.8036 0.80355538 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 2 2 2 1 2 2 2 2 1 1 1 1 2 2 2 2 1 28.281 26.982 2;3 1.2627E-19 12705 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 233.37 223.71 557990000 36935000 24265000 23534000 6292500 6422800 6967800 9582600 59755000 53986000 28970000 23413000 22113000 36531000 38035000 32789000 3258200 3169500 3270100 8948500 52506000 45552000 12211000 11812000 7668400 9551 210 9316 177619;177620;177621;177622;177623;177624;177625;177626;177627;177628;177629;177630;177631;177632;177633;177634;177635;177636;177637;177638;177639;177640;177641;177642;177643;177644;177645;177646;177647;177648;177649;177650;177651;177652;177653;177654;177655;177656;177657;177658 109255;109256;109257;109258;109259;109260;109261;109262;109263;109264;109265;109266;109267;109268;109269;109270;109271;109272;109273;109274;109275;109276;109277;109278;109279 109262 25 IFPLAGVTTNPSIIAAGK Unmodified 1769.0087 0.0087207779 1946 P78055 fsaA Fructose-6-phosphate aldolase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.193 47.828 2 1.9318E-07 23711 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.8 96.643 113530000 6042400 6756100 7202200 0 0 0 18990000 15632000 13874000 0 0 0 7358400 7784600 7795600 0 0 0 7532400 6999100 7562700 0 0 0 9552 1946 9317 177659;177660;177661;177662;177663;177664;177665;177666;177667;177668;177669;177670 109280;109281;109282;109283;109284 109281 5 IFSDAEGK Unmodified 865.41815 0.41814765 263 P0A6M4 dtd D-aminoacyl-tRNA deacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 13.431 14.278 2 0.0050114 4403 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.323 68.54 141480000 24395000 28028000 22806000 0 0 0 11120000 11025000 11969000 0 0 0 10886000 8080200 0 0 0 0 13169000 0 0 0 0 0 9553 263 9318 177671;177672;177673;177674;177675;177676;177677;177678;177679;177680 109285;109286;109287;109288;109289;109290 109288 4 IFSFTALTVVGDGNGR Unmodified 1652.8522 0.85222014 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 1 2 2 2 51.314 50.217 2;3 1.4131E-13 20079 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 207.88 178.92 458840000 13624000 12862000 13565000 19543000 20566000 19612000 11555000 7803500 0 43546000 42293000 43141000 7377100 6163900 7806600 21006000 13244000 13792000 71121000 7766800 0 22432000 22101000 17918000 9554 376 9319 177681;177682;177683;177684;177685;177686;177687;177688;177689;177690;177691;177692;177693;177694;177695;177696;177697;177698;177699;177700;177701;177702;177703;177704;177705;177706;177707;177708;177709;177710;177711;177712;177713;177714;177715 109291;109292;109293;109294;109295;109296;109297;109298;109299;109300;109301;109302;109303;109304;109305;109306;109307;109308;109309;109310;109311 109298 21 IFSGSYAENAAFNPTLPPLQGALILLNLK Unmodified 3071.6696 0.66955832 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 55.848 54.385 3 1.8189E-08 27132 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 109.42 109.34 189740000 2455900 0 3732700 0 0 0 23623000 0 31495000 0 0 0 22450000 24473000 21004000 0 0 0 17659000 20620000 22225000 0 0 0 9555 654 9320 177716;177717;177718;177719;177720;177721;177722;177723;177724;177725 109312;109313;109314;109315;109316;109317;109318 109312 7 IFSLYGER Unmodified 983.50763 0.50763136 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.543 30.961 2 2.3554E-07 13879 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.17 100.05 385840000 44904000 45091000 42821000 0 0 0 39396000 36707000 41237000 2752400 1677900 0 22412000 0 0 0 0 0 36433000 37958000 34455000 0 0 0 9556 91 9321 177726;177727;177728;177729;177730;177731;177732;177733;177734;177735;177736;177737;177738;177739 109319;109320;109321;109322;109323;109324;109325;109326;109327;109328;109329;109330 109330 12 IFSPVSHLNSVK Unmodified 1326.7296 0.7295858 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 23.524 22.802 2;3 7.0731E-07 9711 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 170.85 151.06 1438300000 210940000 154050000 182820000 0 0 0 126540000 116080000 132650000 0 0 0 58799000 61586000 69046000 0 0 0 94153000 107740000 123940000 0 0 0 9557 1298 9322 177740;177741;177742;177743;177744;177745;177746;177747;177748;177749;177750;177751;177752;177753;177754;177755;177756;177757;177758;177759;177760;177761;177762;177763 109331;109332;109333;109334;109335;109336;109337;109338;109339;109340;109341;109342;109343;109344;109345;109346;109347 109342 17 IFSSHVMPFR Unmodified 1219.6172 0.61719858 961 P0AFR2 dauA C4-dicarboxylic acid transporter DauA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.542 26.966 3 0.039812 11780 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 36.334 25.183 44701000 0 0 0 0 0 0 4475700 5945200 5131200 2371800 1786300 2747000 6374800 5408200 5263300 0 0 0 3836300 0 0 0 1361500 0 9558 961 9323 177764;177765;177766;177767;177768;177769;177770;177771;177772;177773;177774 109348;109349;109350;109351 109349 0 IFTEDGVSIPVTVIEVEANR Unmodified 2187.1423 0.14231373 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 53.668 52.478 2;3 7.2451E-56 25431 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 271.64 267.01 4014100000 681770000 365760000 374810000 49095000 52645000 55648000 113220000 178170000 103890000 53212000 87357000 71036000 154910000 171160000 284210000 79754000 70522000 78375000 241270000 265500000 242750000 75769000 78876000 84415000 9559 1621 9324 177775;177776;177777;177778;177779;177780;177781;177782;177783;177784;177785;177786;177787;177788;177789;177790;177791;177792;177793;177794;177795;177796;177797;177798;177799;177800;177801;177802;177803;177804;177805;177806;177807;177808;177809;177810;177811;177812;177813;177814 109352;109353;109354;109355;109356;109357;109358;109359;109360;109361;109362;109363;109364;109365;109366;109367;109368;109369;109370;109371;109372;109373;109374;109375;109376;109377;109378;109379;109380;109381;109382;109383;109384;109385;109386;109387;109388 109374 37 IFTEYRK Unmodified 955.51272 0.51271674 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 13.224 13.622 2 0.01394 3426 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 86.113 28.554 26815000 0 0 0 0 3608300 0 0 0 0 0 5274100 6015400 0 0 0 0 0 0 0 0 0 2224200 4371900 5321500 9560 212 9325 177815;177816;177817;177818;177819;177820;177821 109389;109390 109390 2 IFTGDEILPALVSTLK Unmodified 1715.9709 0.97093829 1857 P76407 yegS Lipid kinase YegS yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 55.093 53.75 2 0.00013717 26557 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.69 22.203 89487000 0 56310000 0 2445200 0 997790 0 0 0 0 0 0 13908000 15826000 0 0 0 0 0 0 0 0 0 0 9561 1857 9326 177822;177823;177824;177825;177826 109391 109391 1 IFTGHEFLDDHAVVIADGLIK Unmodified 2309.2056 0.20558268 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 2 1 1 1 1 2 2 2 46.562 45.079 3;4 2.6328E-15 22429 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 142.99 134.39 913320000 154640000 95509000 60687000 0 0 0 89266000 94220000 27044000 0 0 0 47274000 50347000 38705000 0 0 0 80297000 84190000 91142000 0 0 0 9562 904 9327 177827;177828;177829;177830;177831;177832;177833;177834;177835;177836;177837;177838;177839;177840;177841;177842;177843;177844 109392;109393;109394;109395;109396;109397;109398;109399;109400 109392 9 IFTPEFR Unmodified 908.4756 0.47560295 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.223 29.799 2 0.0015294 13888 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.38 119.7 299020000 0 40782000 41937000 3825200 5432500 4677800 26460000 26339000 26907000 16904000 9163600 12380000 21799000 20546000 0 3740600 3198900 2078600 0 0 22115000 3244300 4136100 3349500 9563 658 9328 177845;177846;177847;177848;177849;177850;177851;177852;177853;177854;177855;177856;177857;177858;177859;177860;177861;177862;177863;177864 109401;109402;109403;109404;109405;109406;109407;109408;109409;109410;109411;109412;109413;109414 109412 14 IFVDEAVNELQTIQDMLR Unmodified 2133.0776 0.077604979 1515 P39199 prmB 50S ribosomal protein L3 glutamine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 3 2 1 2 2 2 2 2 1 2 2 3 2 2 2 2 2 1 2 55.75 54.312 2;3 1.1909E-56 27109 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 372.51 361.9 1374300000 144220000 142810000 133120000 7121100 2529200 5978900 70779000 63993000 72307000 8792400 4601900 4927500 114030000 114240000 97518000 0 0 0 128980000 113440000 127230000 5155200 2793500 9727500 9564 1515 9329 177865;177866;177867;177868;177869;177870;177871;177872;177873;177874;177875;177876;177877;177878;177879;177880;177881;177882;177883;177884;177885;177886;177887;177888;177889;177890;177891;177892;177893;177894;177895;177896;177897;177898;177899;177900;177901;177902;177903;177904;177905 109415;109416;109417;109418;109419;109420;109421;109422;109423;109424;109425;109426;109427;109428;109429;109430 109421 16 IFVDEGPSMK Unmodified 1121.5427 0.54269624 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.586 25.482 2 7.0119E-05 9350 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 133.23 124.31 6135100000 1067700000 971090000 850560000 24538000 23481000 24860000 273060000 242960000 277960000 47300000 50721000 31856000 431770000 421830000 408190000 54261000 31293000 44067000 0 0 659400000 65105000 66904000 66209000 9565 1636 9330 177906;177907;177908;177909;177910;177911;177912;177913;177914;177915;177916;177917;177918;177919;177920;177921;177922;177923;177924;177925;177926;177927 109431;109432;109433;109434;109435;109436;109437;109438;109439;109440;109441;109442;109443;109444;109445;109446;109447;109448;109449 109435 18 IFVDEGPSMK Oxidation (M) 1137.5376 0.53761086 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 1 2 2 1 1 1 2 2 2 2 2 2 20.411 20.839 2 0.0047345 8338 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 71.425 64.205 176290000 23301000 25870000 18323000 494220 1000600 1105400 4241000 5307500 4289600 0 0 0 10644000 10190000 9434600 0 0 0 18438000 22569000 21079000 0 0 0 9566 1636 9330 177928;177929;177930;177931;177932;177933;177934;177935;177936;177937;177938;177939;177940;177941;177942;177943;177944;177945;177946;177947;177948;177949;177950;177951;177952;177953 109450;109451;109452;109453;109454;109455;109456;109457;109458 109456 581 6 IFVDEGPSMKR Unmodified 1277.6438 0.64380726 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 19.863 19.868 2;3 4.9794E-08 5659 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 129.16 119.47 91951000 0 0 0 10589000 9759000 0 0 0 0 8038000 8164100 5187300 0 0 0 7076500 6799200 7654000 0 0 0 9773600 9953900 8956500 9567 1636 9331 177954;177955;177956;177957;177958;177959;177960;177961;177962;177963;177964;177965;177966 109459;109460;109461;109462;109463;109464;109465;109466;109467;109468 109468 10 IFVFDVAR Unmodified 965.53345 0.53345218 567 P0A9Z1 glnB Nitrogen regulatory protein P-II 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.413 40.738 2 3.551E-05 19887 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 173.93 157.78 2334500000 223570000 225290000 200210000 3072800 2531000 2548200 210110000 197150000 196180000 1516200 2267300 2033800 161460000 148880000 149110000 1635400 0 1521600 196690000 201370000 205770000 0 1593000 0 9568 567 9332 177967;177968;177969;177970;177971;177972;177973;177974;177975;177976;177977;177978;177979;177980;177981;177982;177983;177984;177985;177986;177987 109469;109470;109471;109472;109473;109474;109475;109476;109477;109478;109479;109480;109481;109482;109483;109484 109472 16 IFVYGSLR Unmodified 953.53345 0.53345218 833 P0AE48 ytfP Gamma-glutamylcyclotransferase family protein YtfP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 32.04 30.724 2 0.00037013 14297 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143.02 141.24 316320000 38044000 37949000 32184000 0 0 0 29381000 29606000 0 0 0 0 20609000 19277000 21246000 0 0 0 33798000 30564000 23660000 0 0 0 9569 833 9333 177988;177989;177990;177991;177992;177993;177994;177995;177996;177997;177998 109485;109486;109487 109487 3 IFWDPATDTLTIK Unmodified 1519.7922 0.79224564 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.893 50.601 2 2.4669E-05 20073 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 107.06 104.2 947820000 0 0 0 0 0 0 42931000 48119000 47767000 0 0 0 69985000 61925000 66360000 0 0 0 80609000 66877000 81476000 119930000 128590000 133250000 9570 1433 9334 177999;178000;178001;178002;178003;178004;178005;178006;178007;178008;178009;178010;178011;178012 109488;109489;109490;109491;109492;109493;109494;109495;109496;109497;109498;109499;109500;109501 109493 14 IFYGDSDNDITAAR Unmodified 1556.7107 0.71070086 830 P0AE22 aphA Class B acid phosphatase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.701 28.378 2 2.186E-15 13387 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 201.48 193.56 941960000 84052000 83820000 67851000 0 0 0 94982000 83129000 94138000 0 0 0 78077000 79750000 81338000 0 0 0 62812000 53095000 78911000 0 0 0 9571 830 9335 178013;178014;178015;178016;178017;178018;178019;178020;178021;178022;178023;178024 109502;109503;109504;109505;109506;109507;109508;109509 109503 8 IGAAASNTNADWYCR Unmodified 1668.7315 0.73145307 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 25.942 24.721 2 3.9938E-27 10927 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 237.36 235.22 87647000 16252000 14745000 12491000 0 0 0 6419500 5156200 4521000 2581400 0 2106900 4831900 2704600 0 0 0 0 5754700 6177900 3904800 0 0 0 9572 1213 9336 178025;178026;178027;178028;178029;178030;178031;178032;178033;178034;178035;178036;178037 109510;109511;109512;109513;109514;109515 109514 3 IGAAIGSGIGGLGLIEENHTSLMNGGPR Unmodified 2690.381 0.38099764 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.04 44.566 3 2.8711E-41 20697 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 211.92 208.43 816250000 49568000 44424000 44591000 0 0 0 72108000 52544000 57688000 0 0 0 69431000 80356000 75330000 0 0 0 82354000 102640000 85211000 0 0 0 9573 596 9337 178038;178039;178040;178041;178042;178043;178044;178045;178046;178047;178048;178049 109516;109517;109518;109519;109520;109521;109522;109523;109524;109525;109526;109527 109527 12 IGADPTGLPFNSVIALELHGGK Unmodified 2205.1794 0.17936793 1907 P77454 glsA1 Glutaminase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.54 50.237 3 1.1748E-10 24758 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 129.77 126.72 179620000 26621000 26796000 28643000 0 0 0 34040000 31596000 26868000 0 0 0 5060100 0 0 0 0 0 0 0 0 0 0 0 9574 1907 9338 178050;178051;178052;178053;178054;178055;178056 109528;109529;109530;109531;109532;109533 109530 6 IGAENSGHVILLDK Unmodified 1464.7936 0.79364262 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 23.814 22.965 2;3 7.1526E-20 9981 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 218.4 187.48 1882200000 126790000 140720000 113100000 1406200 1330500 1538400 115390000 136810000 144650000 0 2624200 3086000 154620000 170560000 155190000 0 0 0 185970000 209430000 215560000 2035200 0 1397000 9575 1360 9339 178057;178058;178059;178060;178061;178062;178063;178064;178065;178066;178067;178068;178069;178070;178071;178072;178073;178074;178075;178076;178077;178078;178079;178080;178081;178082;178083;178084;178085;178086;178087 109534;109535;109536;109537;109538;109539;109540;109541;109542;109543;109544;109545;109546;109547;109548;109549;109550;109551;109552;109553;109554;109555;109556 109542 23 IGAFEIDDGELHGESPGDR Unmodified 2012.9076 0.90756276 1679 P64503 yebV Uncharacterized protein YebV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 1 1 1 33.816 32.13 2;3 2.8816E-14 15704 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 156.2 148.47 1443000000 236740000 190460000 183910000 0 0 0 232180000 245930000 220360000 3603600 3539200 2734900 0 0 0 0 0 0 47666000 37522000 37612000 745920 0 0 9576 1679 9340 178088;178089;178090;178091;178092;178093;178094;178095;178096;178097;178098;178099;178100;178101;178102;178103;178104;178105;178106;178107 109557;109558;109559;109560;109561;109562;109563;109564 109558 5 IGAGPWVVK Unmodified 925.53854 0.53853756 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 31.367 29.901 2 0.002402 13874 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.265 76.024 9058600000 1159600000 1117800000 870490000 4074600 3488700 3860200 370770000 420590000 388920000 2835400 2753900 3149200 441800000 465100000 438670000 0 0 633270 1112000000 1164000000 1071800000 6304200 4298100 5619000 9577 392 9341 178108;178109;178110;178111;178112;178113;178114;178115;178116;178117;178118;178119;178120;178121;178122;178123;178124;178125;178126;178127;178128;178129;178130;178131;178132;178133;178134;178135;178136;178137;178138;178139;178140 109565;109566;109567;109568;109569;109570;109571;109572;109573;109574;109575;109576;109577 109566 13 IGAGSVVLQPVPPHTTAAGVPAR Unmodified 2194.2222 0.2222358 511 P0A9D4 cysE Serine acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.003 29.496 3 4.9357E-15 13979 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.09 132.83 569510000 89364000 75090000 74121000 902170 845320 0 27863000 29301000 36727000 1313300 0 0 27553000 24760000 27550000 0 0 0 52415000 52306000 47366000 0 1085300 944180 9578 511 9342 178141;178142;178143;178144;178145;178146;178147;178148;178149;178150;178151;178152;178153;178154;178155;178156;178157 109578;109579;109580;109581;109582;109583;109584;109585;109586;109587;109588;109589 109580 12 IGALDWTPAR Unmodified 1098.5822 0.58219329 926 P0AFC3 nuoA NADH-quinone oxidoreductase subunit A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.309 34.51 2 0.00023012 16491 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 118.5 110.45 78836000 5076400 5640900 5625500 976200 1315800 708760 3243300 3678800 3588800 2059100 2564100 2367200 5448000 0 5430300 0 0 0 7988100 10457000 7392400 1717000 1606400 1951100 9579 926 9343 178158;178159;178160;178161;178162;178163;178164;178165;178166;178167;178168;178169;178170;178171;178172;178173;178174;178175;178176;178177 109590;109591;109592;109593;109594;109595;109596;109597;109598 109597 6 IGANMIWDAEK Unmodified 1246.6016 0.6016081 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 35.637 34.203 2 5.5547E-08 16389 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 176.38 165.02 8973500000 949760000 945010000 865520000 4021300 4197800 3877800 740200000 823500000 705370000 0 0 0 558820000 533800000 548440000 1437700 1065000 0 750300000 760830000 772570000 2673600 0 2072700 9580 666 9344 178178;178179;178180;178181;178182;178183;178184;178185;178186;178187;178188;178189;178190;178191;178192;178193;178194;178195;178196;178197;178198 109599;109600;109601;109602;109603;109604;109605;109606;109607;109608;109609;109610 109603 12 IGANMIWDAEK Oxidation (M) 1262.5965 0.59652272 666 P0ABK5 cysK Cysteine synthase A yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 1 1 2 1 30.235 28.79 2 0.0016208 13410 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 69.276 69.276 154420000 23743000 17220000 20086000 0 0 0 0 27172000 23643000 1305100 0 0 0 0 0 0 0 0 0 16151000 23827000 1275600 0 0 9581 666 9344 178199;178200;178201;178202;178203;178204;178205;178206;178207;178208;178209;178210 109611;109612;109613;109614;109615;109616;109617 109611 364 1 IGANMIWDAEKR Unmodified 1402.7027 0.70271913 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 4 4 4 1 2 1 2 3 3 1 1 1 3 3 3 1 4 3 3 1 1 28.668 27.373 2;3 6.3301E-12 12176 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 195.36 176.38 2248100000 255450000 225590000 194950000 7190900 8799600 8641000 197050000 215740000 189120000 6581900 5694200 7206300 113700000 118640000 102480000 0 0 1601000 189000000 186230000 205980000 0 3699900 4741300 9582 666 9345 178211;178212;178213;178214;178215;178216;178217;178218;178219;178220;178221;178222;178223;178224;178225;178226;178227;178228;178229;178230;178231;178232;178233;178234;178235;178236;178237;178238;178239;178240;178241;178242;178243;178244;178245;178246;178247;178248;178249;178250;178251;178252;178253;178254;178255;178256;178257;178258;178259 109618;109619;109620;109621;109622;109623;109624;109625;109626;109627;109628;109629;109630;109631;109632;109633;109634;109635;109636;109637;109638;109639;109640;109641 109636 24 IGAPAAVQIQYQGK Unmodified 1442.7882 0.78816332 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 28.699 26.849 2 1.8831E-06 12713 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 158.76 148.52 36097000 0 0 0 0 0 0 14205000 19775000 0 0 1054500 1061600 0 0 0 0 0 0 0 0 0 0 0 0 9583 1304 9346 178260;178261;178262;178263 109642;109643 109642 2 IGAPAAVQIQYQGKPVDLSR Unmodified 2110.1535 0.15348753 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.234 31.561 3 2.707E-18 12489 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 166.91 165.68 649260000 25346000 24187000 17894000 11758000 10086000 10453000 57976000 52791000 55620000 37892000 34886000 42495000 32519000 24261000 24221000 0 0 0 40885000 48666000 37672000 21359000 19483000 18805000 9584 1304 9347 178264;178265;178266;178267;178268;178269;178270;178271;178272;178273;178274;178275;178276;178277;178278;178279;178280;178281;178282;178283;178284;178285 109644;109645;109646;109647;109648;109649;109650;109651;109652;109653;109654;109655;109656;109657;109658;109659;109660;109661;109662;109663;109664;109665 109645 22 IGAPLNITGLTDYAQEPYYSTAVGLLHYGK Unmodified 3224.6394 0.6393804 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.346 52.89 3 0.0020406 25813 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 44.912 34.205 361620000 34040000 29967000 0 0 0 0 30525000 27644000 32591000 0 0 0 25651000 28645000 31823000 0 0 0 43055000 35992000 41687000 0 0 0 9585 656 9348 178286;178287;178288;178289;178290;178291;178292;178293;178294;178295;178296 109666;109667;109668 109667 3 IGASSAIEALHR Unmodified 1223.6622 0.66223452 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.635 22.121 3 0.00030323 9399 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 71.896 63.985 390990000 70104000 67972000 67107000 0 0 0 39050000 38902000 30930000 0 0 0 11848000 10698000 13063000 0 2294500 0 12920000 13151000 12949000 0 0 0 9586 1887 9349 178297;178298;178299;178300;178301;178302;178303;178304;178305;178306;178307;178308;178309 109669;109670;109671;109672;109673;109674;109675;109676;109677;109678;109679 109672 11 IGAVHSVIFGGFSPEAVAGR Unmodified 1970.0374 0.037395144 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 42.077 40.401 2;3 2.6195E-37 19790 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 297.91 260.95 3974600000 1410600000 1233500000 1146100000 4473500 5010100 3630800 12820000 12269000 15321000 0 0 0 14844000 11585000 14021000 0 0 0 28993000 28727000 32565000 0 0 0 9587 1305 9350 178310;178311;178312;178313;178314;178315;178316;178317;178318;178319;178320;178321;178322;178323;178324;178325;178326;178327 109680;109681;109682;109683;109684;109685;109686;109687;109688;109689;109690;109691;109692;109693 109684 12 IGAVKEGENVVGSETR Unmodified 1643.8479 0.84786304 343 P0A7G6 recA Protein RecA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 16.78 17.135 3 0.029801 4441 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 32.995 30.87 24453000 0 0 0 2971700 2727400 2598200 0 0 0 5649200 3459800 2312900 0 0 0 0 0 0 0 0 0 0 1590800 3143200 9588 343 9351 178328;178329;178330;178331;178332;178333;178334;178335 109694;109695;109696 109696 3 IGCAPITWPIGCGK Unmodified 1528.753 0.75304014 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.6 40.902 2 4.522E-06 19965 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.89 92.208 675230000 53804000 48289000 46738000 0 0 0 45616000 39700000 43054000 0 0 0 44090000 53208000 43396000 0 0 0 86768000 86047000 84521000 0 0 0 9589 346 9352 178336;178337;178338;178339;178340;178341;178342;178343;178344;178345;178346;178347 109697;109698;109699;109700;109701;109702;109703;109704;109705;109706;109707 109701 11 IGDDIAPNLIAR Unmodified 1266.6932 0.6932003 1842 P76250 dmlR HTH-type transcriptional regulator DmlR yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 36.398 35.15 2 0.00032081 12853 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 86.624 68.313 15177000 0 0 0 0 0 0 0 0 0 3103900 2218500 1823100 0 0 0 3143000 2199200 2688800 0 0 0 0 0 0 9590 1842 9353 178348;178349;178350;178351;178352;178353 109708;109709 109708 2 IGDDVYANGEK Unmodified 1179.5408 0.54078198 1303 P27431 roxA 50S ribosomal protein L16 arginine hydroxylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.381 16.111 2 1.9372E-05 5601 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 137.05 104.21 166340000 14065000 13841000 11274000 0 664800 673280 17100000 14450000 15457000 0 0 0 13489000 11376000 9504100 0 0 0 12523000 13053000 13606000 1427700 1931900 1902800 9591 1303 9354 178354;178355;178356;178357;178358;178359;178360;178361;178362;178363;178364;178365;178366;178367;178368;178369;178370 109710;109711;109712;109713;109714;109715;109716;109717;109718;109719 109710 5 IGDGDQFSSGFVEVNPNSK Unmodified 1995.9174 0.91739917 1957 Q46845 yghU Disulfide-bond oxidoreductase YghU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.513 35.839 2 9.2986E-81 17419 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 318.7 290.79 342310000 63847000 61829000 46996000 0 0 0 32066000 32932000 32076000 0 0 0 11034000 9653900 8658400 0 0 0 15155000 14846000 13219000 0 0 0 9592 1957 9355 178371;178372;178373;178374;178375;178376;178377;178378;178379;178380;178381;178382 109720;109721;109722;109723;109724 109722 5 IGDIIQR Unmodified 813.47085 0.47085192 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 19.172 19.427 2 0.0086175 6187 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 88.643 45.643 197950000 0 0 0 0 0 0 0 0 0 100020000 0 0 29493000 26694000 27007000 5931800 4264600 4543800 0 0 0 0 0 0 9593 500 9356 178383;178384;178385;178386;178387;178388;178389 109725 109725 1 IGDISTSNEMSTADAK Oxidation (M) 1654.7356 0.73559498 1763 P75694 yahO Uncharacterized protein YahO yes yes 0 1 0 By MS/MS By MS/MS 1 1 16.151 16.826 2 0.0001549 5880 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 81.709 81.709 11535000 6525900 5009000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9594 1763 9357 178390;178391 109726;109727 109726 613 2 IGDISTSNEMSTADAK Unmodified 1638.7407 0.74068036 1763 P75694 yahO Uncharacterized protein YahO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 21.648 21.846 2 3.4617E-24 8897 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 219.42 219.42 3011700000 1140300000 976460000 894860000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9595 1763 9357 178392;178393;178394 109728;109729;109730;109731;109732;109733 109728 6 IGDISTSNEMSTADAKEDLIK Unmodified 2237.0733 0.073307462 1763 P75694 yahO Uncharacterized protein YahO yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 30.247 29.108 2;3 4.3544E-52 13504 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 251.74 244.2 2975200000 1048900000 1047100000 879180000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9596 1763 9358 178395;178396;178397;178398;178399;178400 109734;109735;109736;109737;109738;109739 109737 6 IGDISTSNEMSTADAKEDLIKK Unmodified 2365.1683 0.16827048 1763 P75694 yahO Uncharacterized protein YahO yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 2 2 24.753 23.949 3;4 6.0198E-07 10682 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.92 98.099 216680000 71840000 75423000 69415000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9597 1763 9359 178401;178402;178403;178404;178405;178406 109740;109741;109742;109743;109744 109741 5 IGDLCWAAGDQQAR Unmodified 1559.7151 0.71507473 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 7 7 6 4 3 4 2 2 2 3 4 3 2 2 2 3 4 3 7 6 4 33.148 31.655 1;2;3 6.7686E-35 10655 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 262.54 251.37 46342000000 1048400000 947350000 951650000 5408000000 5049100000 4864100000 1528400000 1492200000 1355900000 401620000 439970000 409140000 882440000 909280000 885290000 191050000 132150000 119570000 1562800000 1650300000 1485300000 4405900000 5128700000 5092900000 9598 939 9360 178407;178408;178409;178410;178411;178412;178413;178414;178415;178416;178417;178418;178419;178420;178421;178422;178423;178424;178425;178426;178427;178428;178429;178430;178431;178432;178433;178434;178435;178436;178437;178438;178439;178440;178441;178442;178443;178444;178445;178446;178447;178448;178449;178450;178451;178452;178453;178454;178455;178456;178457;178458;178459;178460;178461;178462;178463;178464;178465;178466;178467;178468;178469;178470;178471;178472;178473;178474;178475;178476;178477;178478;178479;178480;178481;178482;178483;178484;178485;178486;178487;178488;178489;178490;178491;178492;178493;178494;178495 109745;109746;109747;109748;109749;109750;109751;109752;109753;109754;109755;109756;109757;109758;109759;109760;109761;109762;109763;109764;109765;109766;109767;109768;109769;109770;109771;109772;109773;109774;109775;109776;109777;109778;109779;109780;109781;109782;109783;109784;109785;109786;109787;109788;109789;109790;109791;109792;109793;109794;109795;109796;109797;109798;109799;109800;109801;109802;109803;109804;109805;109806;109807;109808;109809;109810;109811;109812;109813;109814;109815;109816;109817;109818;109819;109820;109821;109822;109823;109824;109825 109809 80 IGDTVTIGSFSGTVSK Unmodified 1567.8094 0.80935227 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.428 34.498 2 2.5316E-08 13269 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 122.45 113.87 66541000 0 0 0 8746400 8370900 7933400 0 0 0 4431500 4388600 3605300 0 0 3953700 0 0 0 3527300 0 4179100 6049600 5090600 6265000 9599 1899 9361 178496;178497;178498;178499;178500;178501;178502;178503;178504;178505;178506;178507 109826;109827;109828;109829;109830;109831;109832;109833;109834 109830 9 IGDVADK Unmodified 716.37047 0.37046918 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.419 11.938 2 0.004947 3133 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.69 48.506 1794900000 19932000 18753000 21011000 0 2328500 0 221390000 203150000 206760000 31233000 27582000 27531000 150140000 0 0 5787700 8041300 7279300 275040000 262560000 257950000 15241000 16697000 16490000 9600 531 9362 178508;178509;178510;178511;178512;178513;178514;178515;178516;178517;178518;178519;178520;178521;178522;178523;178524;178525;178526;178527 109835;109836;109837;109838;109839;109840 109838 6 IGDVADKICR Unmodified 1145.5863 0.58629239 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 15.668 16.01 3 0.0021709 4335 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 67.726 61.883 34022000 0 0 0 1267200 935920 1152400 0 0 0 4317100 3873300 4679100 0 0 0 0 1816600 1831300 0 0 0 5475600 4433300 4240400 9601 531 9363 178528;178529;178530;178531;178532;178533;178534;178535;178536;178537;178538 109841;109842;109843;109844;109845;109846;109847 109847 7 IGEEYELK Unmodified 979.48623 0.48622722 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 21.394 21.757 2 0.013006 8757 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 74.184 68.704 171620000 25407000 22510000 22868000 407340 368430 0 12239000 0 14663000 0 0 0 12532000 11280000 10205000 0 0 0 13001000 12163000 13979000 0 0 0 9602 1006 9364 178539;178540;178541;178542;178543;178544;178545;178546;178547;178548;178549;178550;178551 109848;109849;109850;109851 109848 4 IGELWPGDEIVFVGVTSAHR Unmodified 2181.1219 0.12185306 1345 P30749 moaE Molybdopterin synthase catalytic subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.727 51.42 3 1.4415E-10 25387 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.32 119.88 382400000 62358000 57244000 49021000 0 0 0 26310000 26975000 29709000 0 0 0 23982000 24699000 19424000 0 0 0 21832000 20875000 19965000 0 0 0 9603 1345 9365 178552;178553;178554;178555;178556;178557;178558;178559;178560;178561;178562;178563 109852;109853;109854;109855;109856;109857;109858;109859;109860;109861 109853 10 IGENINIR Unmodified 927.51378 0.51377937 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 1 2 2 3 3 3 2 2 1 4 2 3 1 2 2 4 3 3 21.041 21.129 2 8.2982E-05 8347 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 164.52 93.603 32372000000 2295900000 2300500000 2032700000 20548000 20108000 20713000 2982600000 2860200000 2980000000 4806000 3749900 3255700 2551200000 2228500000 2063600000 21219000 16148000 16192000 3471500000 3295100000 3183500000 0 0 0 9604 267 9366 178564;178565;178566;178567;178568;178569;178570;178571;178572;178573;178574;178575;178576;178577;178578;178579;178580;178581;178582;178583;178584;178585;178586;178587;178588;178589;178590;178591;178592;178593;178594;178595;178596;178597;178598;178599;178600;178601;178602;178603;178604;178605;178606;178607;178608;178609;178610;178611;178612;178613;178614;178615;178616;178617;178618;178619 109862;109863;109864;109865;109866;109867;109868;109869;109870;109871;109872;109873;109874;109875;109876;109877;109878;109879;109880;109881;109882;109883;109884;109885;109886;109887;109888;109889;109890;109891;109892;109893;109894;109895;109896;109897;109898;109899;109900;109901 109878 31 IGEQELAR Unmodified 914.48214 0.48214489 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 14.666 15.39 2 6.6301E-05 4806 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 167.82 107.04 450280000 24475000 21783000 21357000 0 0 0 56619000 0 0 0 0 0 79392000 62117000 52631000 0 0 0 70116000 0 61249000 0 543050 0 9605 509 9367 178620;178621;178622;178623;178624;178625;178626;178627;178628;178629 109902;109903;109904;109905;109906;109907 109907 6 IGEQEYFDK Unmodified 1127.5135 0.5135046 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.961 22.063 2 0.00015747 9024 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.28 125.59 258630000 64513000 56096000 51559000 0 0 0 33105000 0 23445000 0 0 0 5621900 6428400 8130100 0 0 0 0 9727400 0 0 0 0 9606 119 9368 178630;178631;178632;178633;178634;178635;178636;178637;178638;178639;178640;178641 109908;109909;109910;109911;109912;109913;109914 109911 7 IGEVHDGAATMDWMEQEQER Unmodified 2330.9896 0.98959461 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 1 1 1 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 1 1 1 35.141 33.63 2;3 8.022E-68 14864 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 376.68 374.19 31858000000 3114100000 2817300000 2696500000 13517000 11919000 15356000 1617400000 1704600000 1742900000 15928000 11514000 8620900 3000600000 2559500000 2687400000 13644000 9569400 11299000 3197600000 3274300000 3298700000 11999000 11586000 12760000 9607 264 9369 178642;178643;178644;178645;178646;178647;178648;178649;178650;178651;178652;178653;178654;178655;178656;178657;178658;178659;178660;178661;178662;178663;178664;178665;178666;178667;178668;178669;178670;178671;178672;178673;178674;178675;178676;178677;178678;178679;178680;178681;178682;178683;178684;178685;178686;178687;178688;178689;178690 109915;109916;109917;109918;109919;109920;109921;109922;109923;109924;109925;109926;109927;109928;109929;109930;109931;109932;109933;109934;109935;109936;109937;109938;109939;109940;109941;109942;109943;109944;109945;109946;109947;109948;109949;109950;109951;109952;109953;109954;109955;109956;109957;109958;109959;109960;109961;109962;109963;109964;109965;109966;109967;109968;109969;109970;109971;109972 109963 58 IGEVHDGAATMDWMEQEQER Oxidation (M) 2346.9845 0.98450923 264 P0A6M8 fusA Elongation factor G yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 6 3 3 3 4 4 4 4 5 5 28.744 27.563 3 1.8503E-10 12409 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 125.73 124.43 909850000 104310000 76466000 96803000 0 0 0 58442000 47622000 46752000 0 0 0 64401000 65719000 58055000 0 0 0 91612000 101650000 98031000 0 0 0 9608 264 9369 178691;178692;178693;178694;178695;178696;178697;178698;178699;178700;178701;178702;178703;178704;178705;178706;178707;178708;178709;178710;178711;178712;178713;178714;178715;178716;178717;178718;178719;178720;178721;178722;178723;178724;178725;178726;178727;178728;178729;178730;178731;178732;178733;178734;178735;178736;178737;178738;178739;178740 109973;109974;109975;109976;109977;109978;109979;109980;109981;109982;109983;109984;109985;109986;109987;109988;109989;109990;109991;109992;109993;109994;109995;109996;109997;109998;109999;110000;110001;110002;110003;110004;110005;110006;110007;110008;110009;110010;110011;110012;110013;110014;110015 109981 113;114 43 IGEVHDGAATMDWMEQEQER 2 Oxidation (M) 2362.9794 0.97942385 264 P0A6M8 fusA Elongation factor G yes yes 0 2 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 21.55 21.621 3 0.0068808 8536 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 43.696 43.562 56359000 5737100 0 5985500 0 0 0 5093200 0 3253300 0 0 0 4613500 5548800 4357800 0 0 0 8841000 7741700 5187300 0 0 0 9609 264 9369 178741;178742;178743;178744;178745;178746;178747;178748;178749;178750 110016;110017 110016 113;114 2 IGEYYNLNLTIVNDQVDQTFR Unmodified 2514.2391 0.23906766 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.666 52.226 2 3.6133E-63 24622 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 362.97 348.89 207910000 14579000 11669000 12877000 0 0 0 20760000 21934000 23268000 0 0 0 15905000 18492000 13242000 0 0 0 23025000 18987000 13171000 0 0 0 9610 1450 9370 178751;178752;178753;178754;178755;178756;178757;178758;178759;178760;178761;178762 110018;110019;110020;110021;110022;110023;110024;110025 110025 8 IGFGPFPGSVYHVPYPSDLHGISTQDSLDAIER Unmodified 3570.7419 0.74194799 1592 P50457 puuE 4-aminobutyrate aminotransferase PuuE yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 50.858 49.616 4 2.3438E-13 24237 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.7 109.65 138180000 52244000 39112000 43235000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3591700 0 0 0 0 0 9611 1592 9371 178763;178764;178765;178766 110026;110027 110027 2 IGFIGCGNMGK Unmodified 1152.542 0.54198473 535 P0A9L8 proC Pyrroline-5-carboxylate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.207 27.916 2 6.9975E-05 13402 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.58 122.88 595210000 96847000 76449000 82523000 751130 693430 838900 44601000 41930000 41851000 0 0 0 40120000 41158000 39129000 0 0 0 0 49350000 38967000 0 0 0 9612 535 9372 178767;178768;178769;178770;178771;178772;178773;178774;178775;178776;178777;178778;178779;178780 110028;110029;110030;110031;110032;110033;110034;110035;110036;110037;110038 110028 5 IGFLCDIR Unmodified 992.51134 0.51133653 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.397 36.78 2 0.0001154 18323 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 158.08 119.29 2036100000 210890000 209880000 182920000 2162000 2303900 1992200 212710000 189820000 191940000 0 1675700 1596400 135470000 151770000 127150000 0 788520 997720 135960000 142170000 131310000 1592300 1035200 0 9613 421 9373 178781;178782;178783;178784;178785;178786;178787;178788;178789;178790;178791;178792;178793;178794;178795;178796;178797;178798;178799;178800;178801 110039;110040;110041 110039 3 IGFMVGNK Unmodified 864.45276 0.45275902 1905 P77434 alaC Glutamate-pyruvate aminotransferase AlaC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.981 24.858 2 0.074651 11188 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 54.571 35.765 72046000 11135000 9224700 10615000 0 0 0 4347200 4800500 4022600 0 0 0 4140000 3409400 2731400 0 0 0 5242000 7402700 4975500 0 0 0 9614 1905 9374 178802;178803;178804;178805;178806;178807;178808;178809;178810;178811;178812;178813 110042;110043 110043 1 IGFQGTLLIEPKPQEPTK Unmodified 1995.1041 0.10407773 55 P00944 xylA Xylose isomerase yes yes 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 36.665 35.197 3 0.12387 16855 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 21.987 21.76 30865000 6646200 9531000 12506000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2181000 0 0 0 9615 55 9375 178814;178815;178816;178817 110044 110044 1 IGFVGVVHPELER Unmodified 1450.7932 0.79324869 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 33.659 32.147 2;3 2.1249E-08 14603 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 157.38 141.24 7385100000 721830000 663440000 596400000 2779400 2606300 3762200 494000000 480000000 501770000 0 5621400 4087000 612040000 547940000 493320000 0 0 0 722940000 762750000 769800000 0 0 0 9616 161 9376 178818;178819;178820;178821;178822;178823;178824;178825;178826;178827;178828;178829;178830;178831;178832;178833;178834;178835;178836;178837;178838;178839;178840;178841;178842;178843;178844;178845;178846 110045;110046;110047;110048;110049;110050;110051;110052;110053;110054;110055;110056;110057;110058;110059;110060;110061;110062;110063;110064;110065;110066;110067;110068;110069;110070;110071 110069 27 IGFVSLGCPK Unmodified 1076.5689 0.56885141 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.999 32.533 2 0.00049378 14737 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 99.442 85.863 523940000 35832000 38647000 24370000 2801400 1998100 2561800 37974000 31784000 34095000 3687000 3519100 3129700 39024000 29841000 34114000 2831200 1530200 1918300 60921000 63115000 62139000 2723700 1993100 3388300 9617 863 9377 178847;178848;178849;178850;178851;178852;178853;178854;178855;178856;178857;178858;178859;178860;178861;178862;178863;178864;178865;178866;178867;178868;178869;178870 110072;110073 110073 2 IGGASFEDFQQDLLNLSK Unmodified 1980.9793 0.97927114 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 54.422 53.089 2 5.7687E-23 26270 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 254.89 242.62 731070000 143280000 128770000 126510000 0 0 0 42285000 45488000 43228000 0 0 0 29045000 30495000 27918000 0 2971700 0 33375000 38822000 38889000 0 0 0 9618 218 9378 178871;178872;178873;178874;178875;178876;178877;178878;178879;178880;178881;178882;178883 110074;110075;110076;110077;110078;110079 110074 6 IGGDRFDEAIINYVR Unmodified 1736.8846 0.8845829 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 1 1 1 2 2 2 2 2 2 41.592 39.843 2;3 4.0473E-35 18541 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 247.29 221.28 3055300000 206320000 190690000 182020000 40548000 37244000 39091000 157020000 151700000 140910000 177400000 181030000 132690000 130730000 136310000 124340000 23854000 20111000 28273000 210540000 255800000 249370000 77486000 83953000 77826000 9619 564 9379 178884;178885;178886;178887;178888;178889;178890;178891;178892;178893;178894;178895;178896;178897;178898;178899;178900;178901;178902;178903;178904;178905;178906;178907;178908;178909;178910;178911;178912;178913;178914;178915;178916;178917;178918;178919;178920;178921;178922;178923;178924;178925;178926;178927;178928;178929 110080;110081;110082;110083;110084;110085;110086;110087;110088;110089;110090;110091;110092;110093;110094;110095;110096;110097;110098;110099;110100;110101;110102;110103;110104;110105;110106;110107;110108;110109;110110;110111;110112;110113 110113 33 IGGMLALR Unmodified 829.48439 0.4843935 1480 P37645 yhjG Uncharacterized protein YhjG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.347 28.648 2 0.0018669 13663 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.27 76.74 46951000 4645200 5263700 4965900 1414100 0 2003200 6816600 7110600 4917400 2258600 3034000 2275500 0 0 0 0 0 0 0 0 2246200 0 0 0 9620 1480 9380 178930;178931;178932;178933;178934;178935;178936;178937;178938;178939;178940;178941 110114;110115;110116;110117;110118 110117 4 IGGNDLDIALAFK Unmodified 1345.7242 0.72416608 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 47.245 46.989 2 9.776E-05 16956 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 134.13 124.13 93482000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4281400 33010000 27295000 28895000 0 0 0 0 0 0 9621 1448 9381 178942;178943;178944;178945 110119;110120 110119 0 IGGSATFNGR Unmodified 978.48829 0.4882929 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.257 14.844 2 0.0001022 3505 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 130.28 112.99 90148000 7594500 6034800 7424300 11524000 12765000 14531000 0 0 0 4939500 4891200 4371400 0 2404000 2001800 0 0 554850 0 3442300 0 2458900 2396800 2813200 9622 1807 9382 178946;178947;178948;178949;178950;178951;178952;178953;178954;178955;178956;178957;178958;178959;178960;178961 110121;110122;110123;110124 110122 4 IGGVAHDLPR Unmodified 1033.5669 0.56687757 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.059 15.598 2 1.1292E-06 4249 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 168.27 147.71 1132100000 27344000 28745000 21313000 6504600 5115200 5391300 65571000 91421000 86507000 26060000 23065000 25962000 93258000 80100000 85026000 10370000 3349100 5388100 130540000 128590000 126380000 16300000 23317000 16468000 9623 1426 9383 178962;178963;178964;178965;178966;178967;178968;178969;178970;178971;178972;178973;178974;178975;178976;178977;178978;178979;178980;178981;178982;178983;178984;178985 110125;110126;110127;110128;110129;110130;110131;110132;110133;110134;110135;110136;110137;110138;110139;110140;110141;110142 110131 17 IGGVSLPPYDSLNLGAHCGDNPDHVEENR Unmodified 3131.4367 0.43667462 1430 P33644 yfiH Laccase domain protein YfiH yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.023 35.353 4 5.4625E-11 17159 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.34 110.48 151730000 11906000 17158000 19024000 0 0 0 12213000 10393000 10950000 0 0 0 9374300 8040200 8663300 0 0 0 12474000 13647000 17882000 0 0 0 9624 1430 9384 178986;178987;178988;178989;178990;178991;178992;178993;178994;178995;178996;178997 110143 110143 1 IGHGFDVHAFGGEGPIIIGGVR Unmodified 2204.1491 0.14907086 1648 P62617 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.444 39.77 3;4 4.4357E-15 19384 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.2 134.63 411620000 33314000 25231000 21302000 0 0 0 43439000 37533000 36302000 0 0 0 29394000 26365000 30752000 0 0 0 41778000 45403000 40809000 0 0 0 9625 1648 9385 178998;178999;179000;179001;179002;179003;179004;179005;179006;179007;179008;179009;179010;179011;179012;179013;179014;179015;179016;179017;179018;179019;179020;179021 110144;110145;110146;110147;110148;110149;110150 110145 7 IGHTVER Unmodified 810.4348 0.43480077 986 P0AG51 rpmD 50S ribosomal protein L30 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 2 1 1 1 1 1 7.415 8.2709 2 0.0020276 2198 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 119.56 85.818 1038700000 159740000 137430000 163690000 1104100 0 0 84337000 89296000 92452000 0 0 0 41943000 52370000 29498000 0 0 0 50052000 61172000 75668000 0 0 0 9626 986 9386 179022;179023;179024;179025;179026;179027;179028;179029;179030;179031;179032;179033;179034;179035;179036;179037 110151;110152;110153;110154;110155;110156;110157;110158;110159;110160;110161;110162;110163;110164;110165 110156 15 IGHTVEREDTPAIR Unmodified 1592.8271 0.82706802 986 P0AG51 rpmD 50S ribosomal protein L30 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 3 3 3 2 1 3 2 2 2 1 2 2 1 2 2 3 2 3 2 1 2 12.542 13.209 2;3;4 1.2757E-07 3795 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 141.71 132.28 894250000 111300000 108660000 124470000 26074000 27320000 26656000 37866000 13710000 37479000 11084000 6556500 7315800 23942000 33925000 42055000 5691600 12267000 11822000 86625000 56529000 68750000 3707800 1986500 8462300 9627 986 9387 179038;179039;179040;179041;179042;179043;179044;179045;179046;179047;179048;179049;179050;179051;179052;179053;179054;179055;179056;179057;179058;179059;179060;179061;179062;179063;179064;179065;179066;179067;179068;179069;179070;179071;179072;179073;179074;179075;179076;179077;179078;179079;179080;179081;179082;179083;179084;179085;179086;179087;179088;179089;179090 110166;110167;110168;110169;110170;110171;110172;110173;110174;110175;110176 110172 11 IGHWLWNQGR Unmodified 1265.6418 0.64177385 511 P0A9D4 cysE Serine acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 28.319 27.059 2;3 9.413E-05 12401 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 99.802 98.551 339870000 57167000 50145000 10146000 0 0 0 22225000 25897000 25105000 0 0 0 17407000 14389000 16755000 0 0 0 33771000 37973000 28894000 0 0 0 9628 511 9388 179091;179092;179093;179094;179095;179096;179097;179098;179099;179100;179101;179102;179103;179104;179105;179106;179107;179108;179109;179110;179111;179112;179113;179114 110177;110178;110179;110180;110181;110182;110183;110184;110185;110186 110180 3 IGIDLGGTK Unmodified 872.49673 0.49673232 1231 P23917 mak Fructokinase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 26.765 25.6 2 0.00029459 11820 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 118.32 75.928 405200000 0 41858000 41381000 0 0 0 55312000 52833000 47759000 0 0 0 23170000 25151000 24160000 0 0 0 34401000 29747000 29428000 0 0 0 9629 1231 9389 179115;179116;179117;179118;179119;179120;179121;179122;179123;179124;179125 110187;110188;110189;110190 110189 3 IGIFQDLVDR Unmodified 1174.6346 0.63462279 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.898 45.576 2 1.7286E-06 21369 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 161.79 141.27 1753900000 164530000 138790000 134160000 4868700 0 4156900 109500000 103000000 97034000 42540000 42518000 37817000 122270000 112270000 111500000 33029000 22660000 21585000 130470000 130010000 133750000 17574000 20149000 19704000 9630 1576 9390 179126;179127;179128;179129;179130;179131;179132;179133;179134;179135;179136;179137;179138;179139;179140;179141;179142;179143;179144;179145;179146;179147;179148 110191;110192;110193;110194;110195;110196;110197;110198;110199;110200;110201 110200 10 IGIGPSSSHTVGPMK Unmodified 1466.7551 0.75514863 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 2 1 1 1 1 2 2 2 1 2 2 2 1 1 1 19.142 19.591 2;3 2.322E-06 7534 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.08 100.97 650150000 45059000 49488000 45627000 11709000 13130000 15028000 28448000 33672000 24297000 3734100 3875600 4655600 40626000 43239000 38189000 0 733510 0 83557000 77068000 70451000 5036000 6533300 5992100 9631 1343 9391 179149;179150;179151;179152;179153;179154;179155;179156;179157;179158;179159;179160;179161;179162;179163;179164;179165;179166;179167;179168;179169;179170;179171;179172;179173;179174;179175;179176;179177;179178;179179;179180;179181 110202;110203;110204;110205;110206;110207;110208;110209;110210;110211;110212;110213;110214;110215;110216;110217;110218;110219;110220;110221;110222;110223 110207 22 IGIIGAMEEEVTLLR Unmodified 1642.8964 0.89639314 903 P0AF12 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase yes yes 0 0 0 By matching By MS/MS 1 1 54.954 53.525 2 9.9736E-05 26335 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 111.52 104.87 920550000 0 0 4106000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 916450000 0 0 0 0 9632 903 9392 179182;179183 110224 110224 1 IGIQPGHIHKPGK Unmodified 1380.799 0.79900277 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 11.852 12.585 2;3 2.5713E-05 3457 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.45 131.12 7379700000 634570000 737330000 693630000 2774400 2122500 3279300 338570000 337760000 308740000 3118900 1912300 2101400 537620000 443590000 413520000 1509900 0 0 954530000 980280000 978640000 1146500 1556400 1423700 9633 1013 9393 179184;179185;179186;179187;179188;179189;179190;179191;179192;179193;179194;179195;179196;179197;179198;179199;179200;179201;179202;179203;179204;179205;179206;179207;179208;179209;179210;179211;179212;179213;179214;179215;179216;179217;179218 110225;110226;110227;110228;110229;110230;110231;110232;110233;110234;110235;110236;110237;110238;110239;110240;110241;110242;110243;110244;110245;110246;110247;110248;110249 110241 25 IGIRPVIDGR Unmodified 1094.656 0.65602693 1758 P69922 fucI L-fucose isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 1 21.304 21.58 2;3 0.00030022 8932 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 90.827 84.523 325460000 46418000 42448000 36773000 169390 0 0 31870000 31754000 29172000 0 0 0 16502000 19850000 18281000 0 0 0 19859000 20766000 11600000 0 0 0 9634 1758 9394 179219;179220;179221;179222;179223;179224;179225;179226;179227;179228;179229;179230;179231;179232;179233;179234;179235;179236;179237;179238;179239;179240;179241;179242 110250;110251;110252;110253;110254;110255;110256;110257;110258 110252 9 IGIVAAGYADGYPR Unmodified 1421.7303 0.73031409 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.513 33.065 2 0.00023439 15698 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 82.171 62.409 312880000 60156000 52979000 51287000 0 0 0 10599000 8902800 13826000 0 0 0 13102000 11455000 9728500 0 0 0 28617000 26030000 26194000 0 0 0 9635 1326 9395 179243;179244;179245;179246;179247;179248;179249;179250;179251;179252;179253;179254 110259;110260;110261;110262;110263;110264;110265;110266;110267 110261 8 IGKDDPAHINDVIVEAAISTILDCEDSVAAVDAEDK Unmodified 3807.836 0.83604389 1465 P37330 glcB Malate synthase G yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.474 54.049 4 3.4603E-29 26949 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 171.11 169.71 602540000 133430000 121180000 128480000 0 0 0 0 0 0 0 0 0 32586000 36101000 24296000 0 0 0 38275000 49804000 38393000 0 0 0 9636 1465 9396 179255;179256;179257;179258;179259;179260;179261;179262;179263 110268;110269 110268 2 IGLELGLPYDMLYR Unmodified 1651.8644 0.86436473 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.929 53.481 2 4.6369E-15 26465 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 199.68 193.83 2858100000 216210000 205260000 237240000 1278200 0 1290000 144670000 135300000 146670000 0 0 0 353120000 288880000 320850000 0 0 0 284470000 267330000 255540000 0 0 0 9637 86 9397 179264;179265;179266;179267;179268;179269;179270;179271;179272;179273;179274;179275;179276;179277 110270;110271;110272;110273;110274;110275;110276;110277;110278;110279;110280;110281 110272 12 IGLETAR Unmodified 758.42865 0.42865276 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.593 16.268 2 0.0051918 4493 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 100.67 52.555 1509700000 260980000 268790000 258260000 1962300 2300100 2464100 47441000 50789000 43103000 3478400 344260 0 56393000 47015000 45884000 0 0 0 149670000 132420000 127730000 5051700 5606200 0 9638 65 9398 179278;179279;179280;179281;179282;179283;179284;179285;179286;179287;179288;179289;179290;179291;179292;179293;179294;179295;179296 110282;110283;110284;110285;110286;110287;110288;110289;110290;110291;110292;110293 110283 11 IGLFMYDHLGK Unmodified 1292.6587 0.65872905 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 2 2 2 2 2 2 1 1 3 2 2 1 1 1 2 2 2 37.789 36.209 2;3 6.7443E-05 18034 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.07 111.95 2669600000 13783000 13768000 12589000 1700000 1311500 1636400 383990000 409600000 405790000 177690000 187410000 179760000 118400000 100670000 120560000 31542000 18882000 20999000 128980000 119520000 124110000 30671000 32706000 33558000 9639 1088 9399 179297;179298;179299;179300;179301;179302;179303;179304;179305;179306;179307;179308;179309;179310;179311;179312;179313;179314;179315;179316;179317;179318;179319;179320;179321;179322;179323;179324;179325;179326;179327;179328;179329;179330;179331;179332;179333;179334;179335 110294;110295;110296;110297;110298;110299;110300;110301;110302;110303;110304;110305;110306;110307;110308;110309;110310;110311;110312;110313;110314;110315;110316;110317;110318;110319;110320;110321;110322;110323 110307 29 IGLFMYDHLGK Oxidation (M) 1308.6536 0.65364367 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 2 2 1 3 1 1 1 2 1 1 34.662 32.858 3 0.0058454 13305 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 62.466 58.703 65067000 0 0 0 0 0 0 0 0 0 12827000 7961900 5571000 8137800 2782700 4890700 0 0 0 5017700 10308000 6625400 944880 0 0 9640 1088 9399 179336;179337;179338;179339;179340;179341;179342;179343;179344;179345;179346;179347;179348;179349;179350 110324;110325;110326;110327;110328;110329 110325 484 5 IGLFMYDHLGKR Unmodified 1448.7598 0.75984008 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 4 4 4 2 2 2 3 3 2 30.495 28.844 2;3;4 2.1006E-08 11147 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 171.56 159.34 935830000 0 0 0 0 2006600 3930400 0 1581700 0 241600000 235790000 236660000 0 0 0 33336000 28493000 31724000 0 0 0 40128000 42599000 37988000 9641 1088 9400 179351;179352;179353;179354;179355;179356;179357;179358;179359;179360;179361;179362;179363;179364;179365;179366;179367;179368;179369;179370;179371;179372;179373;179374;179375;179376;179377;179378;179379;179380 110330;110331;110332;110333;110334;110335;110336;110337;110338;110339;110340;110341;110342;110343;110344;110345;110346;110347;110348;110349;110350;110351 110341 22 IGLFMYDHLGKR Oxidation (M) 1464.7548 0.7547547 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 1 1 By MS/MS By MS/MS By matching 2 1 1 29.724 27.786 4 0.0044458 11038 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 62.166 60.027 16758000 0 0 0 0 0 0 0 0 0 0 9869200 4386300 0 0 0 0 0 0 2502100 0 0 0 0 0 9642 1088 9400 179381;179382;179383;179384 110352;110353;110354 110354 484 3 IGLHAVAQDR Unmodified 1078.5883 0.5883413 1434 P33937 napA Periplasmic nitrate reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 13.519 14.395 2 0.028283 4209 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 57.96 27.398 50355000 7865500 8123100 6545800 0 0 0 4366500 3573100 0 0 0 0 5046500 6238400 4543200 0 0 0 0 4053200 0 0 0 0 9643 1434 9401 179385;179386;179387;179388;179389;179390;179391;179392;179393 110355;110356;110357;110358 110358 4 IGLLAGR Unmodified 698.44391 0.44390889 1309 P27832 wecD dTDP-fucosamine acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 23.437 22.73 2 0.0014323 9984 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.07 64.224 33049000 0 4588700 0 0 0 0 4663200 0 6008500 0 0 0 4935800 2855000 4296400 0 0 0 0 0 5701200 0 0 0 9644 1309 9402 179394;179395;179396;179397;179398;179399;179400;179401 110359;110360 110359 1 IGLLLDMPLR Oxidation (M) 1155.6686 0.66856545 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 2 5 1 1 7 7 8 1 1 2 3 5 3 45.447 44.4 2 0.00023409 16325 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 93.374 70.354 592520000 3799900 2271800 1955800 0 0 0 12731000 4192500 3118900 41381000 30814000 24788000 2817100 4094900 0 121440000 87044000 84223000 3909800 3391300 5931000 51012000 57057000 46550000 9645 458 9403 179402;179403;179404;179405;179406;179407;179408;179409;179410;179411;179412;179413;179414;179415;179416;179417;179418;179419;179420;179421;179422;179423;179424;179425;179426;179427;179428;179429;179430;179431;179432;179433;179434;179435;179436;179437;179438;179439;179440;179441;179442;179443;179444;179445;179446;179447;179448;179449;179450;179451;179452;179453;179454;179455;179456 110361;110362;110363;110364;110365;110366;110367;110368;110369;110370;110371;110372;110373;110374;110375;110376;110377;110378;110379;110380;110381;110382;110383;110384;110385;110386;110387;110388;110389;110390;110391;110392;110393;110394;110395;110396;110397;110398;110399;110400;110401;110402;110403;110404;110405;110406;110407;110408;110409;110410;110411;110412;110413 110383 233 52 IGLLLDMPLR Unmodified 1139.6737 0.67365083 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 5 5 4 1 1 2 2 3 2 52.26 51.366 2;3 2.0752E-12 20210 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 214.32 188.43 30109000000 643930000 617350000 577190000 7685400 7423300 6839500 346830000 380530000 390160000 1472000000 1361200000 1341700000 402890000 376700000 307040000 5189700000 4584800000 4728200000 519130000 584970000 531230000 1943000000 1907200000 1880900000 9646 458 9403 179457;179458;179459;179460;179461;179462;179463;179464;179465;179466;179467;179468;179469;179470;179471;179472;179473;179474;179475;179476;179477;179478;179479;179480;179481;179482;179483;179484;179485;179486;179487;179488;179489;179490;179491;179492;179493;179494;179495;179496;179497;179498 110414;110415;110416;110417;110418;110419;110420;110421;110422;110423;110424;110425;110426;110427;110428;110429;110430;110431;110432;110433;110434;110435;110436;110437;110438;110439;110440;110441;110442;110443;110444;110445;110446;110447;110448;110449;110450;110451;110452;110453;110454;110455;110456;110457;110458;110459;110460 110441 41 IGLLLDMPLRDIER Oxidation (M) 1668.9233 0.92327659 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 9 8 9 10 10 9 9 10 8 45.675 44.395 2;3 9.8043E-06 15225 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 97.69 92.799 3093200000 0 1239000 0 0 0 0 0 1856300 5351000 239010000 198860000 225310000 0 0 0 629840000 519060000 600510000 0 0 0 195650000 270860000 205620000 9647 458 9404 179499;179500;179501;179502;179503;179504;179505;179506;179507;179508;179509;179510;179511;179512;179513;179514;179515;179516;179517;179518;179519;179520;179521;179522;179523;179524;179525;179526;179527;179528;179529;179530;179531;179532;179533;179534;179535;179536;179537;179538;179539;179540;179541;179542;179543;179544;179545;179546;179547;179548;179549;179550;179551;179552;179553;179554;179555;179556;179557;179558;179559;179560;179561;179562;179563;179564;179565;179566;179567;179568;179569;179570;179571;179572;179573;179574;179575;179576;179577;179578;179579;179580;179581;179582;179583 110461;110462;110463;110464;110465;110466;110467;110468;110469;110470;110471;110472;110473;110474;110475;110476;110477;110478;110479;110480;110481;110482;110483;110484;110485;110486;110487;110488;110489;110490;110491;110492;110493;110494;110495;110496;110497;110498;110499;110500;110501;110502;110503;110504;110505;110506;110507;110508;110509;110510;110511;110512;110513;110514;110515;110516;110517;110518;110519;110520;110521;110522;110523;110524;110525;110526;110527;110528;110529;110530;110531;110532;110533;110534;110535;110536;110537 110480 233 71 IGLLLDMPLRDIER Unmodified 1652.9284 0.92836197 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 1 1 4 5 7 2 1 1 8 11 12 2 2 3 4 3 7 50.541 49.623 2;3 4.5247E-14 19265 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 199.82 197.31 63153000000 46663000 36900000 45651000 39185000 41927000 37770000 35239000 36043000 34108000 5038900000 4785200000 4233700000 38418000 21163000 24458000 12255000000 11420000000 11613000000 62083000 60187000 53002000 6081700000 6377500000 736160000 9648 458 9404 179584;179585;179586;179587;179588;179589;179590;179591;179592;179593;179594;179595;179596;179597;179598;179599;179600;179601;179602;179603;179604;179605;179606;179607;179608;179609;179610;179611;179612;179613;179614;179615;179616;179617;179618;179619;179620;179621;179622;179623;179624;179625;179626;179627;179628;179629;179630;179631;179632;179633;179634;179635;179636;179637;179638;179639;179640;179641;179642;179643;179644;179645;179646;179647;179648;179649;179650;179651;179652;179653;179654;179655;179656;179657;179658;179659;179660;179661;179662;179663;179664;179665;179666;179667;179668 110538;110539;110540;110541;110542;110543;110544;110545;110546;110547;110548;110549;110550;110551;110552;110553;110554;110555;110556;110557;110558;110559;110560;110561;110562;110563;110564;110565;110566;110567;110568;110569;110570;110571;110572;110573;110574;110575;110576;110577;110578;110579;110580;110581;110582;110583;110584;110585;110586;110587;110588;110589;110590;110591;110592;110593;110594;110595;110596;110597;110598;110599;110600;110601;110602;110603;110604;110605;110606;110607;110608;110609;110610;110611;110612;110613;110614;110615;110616;110617;110618;110619;110620;110621;110622;110623;110624;110625;110626;110627;110628;110629;110630;110631;110632;110633;110634;110635;110636;110637;110638;110639;110640;110641;110642;110643 110606 105 IGLSTLVSVNTTNR Unmodified 1473.8151 0.81510635 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 2 1 39.001 36.934 2 2.4422E-05 14697 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 91.549 85.309 35367000 0 0 0 1661300 1697900 1576200 3810000 2392900 3116000 4956100 3569600 4103400 0 1495700 0 0 0 0 0 0 0 2720300 1853300 2414500 9649 1300 9405 179669;179670;179671;179672;179673;179674;179675;179676;179677;179678;179679;179680;179681;179682 110644;110645;110646;110647;110648 110645 3 IGLTVAK Unmodified 700.44833 0.44832557 381 P0A7Y8 rnpA Ribonuclease P protein component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 18.283 18.712 2 0.0063618 6880 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.793 9.2809 84756000 0 32008000 31544000 0 0 0 0 9679700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11524000 0 9650 381 9406 179683;179684;179685;179686 110649;110650;110651;110652 110652 4 IGLVDGVVK Unmodified 898.54877 0.54876789 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 30.125 28.783 2 0.0062757 13292 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.501 32.665 376980000 115120000 117190000 118710000 1419100 1971700 1232500 0 0 0 0 0 0 0 0 0 0 0 0 8280800 7555900 5503300 0 0 0 9651 1173 9407 179687;179688;179689;179690;179691;179692;179693;179694;179695 110653;110654;110655;110656 110656 3 IGLVGEETAK Unmodified 1015.555 0.55497548 684 P0ABV2 exbD Biopolymer transport protein ExbD yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.106 20.33 2 0.0034074 6260 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 73.233 59.654 85870000 0 6703900 0 3494200 2412500 0 0 0 0 1961400 0 0 8304700 7810500 7935600 11282000 8148000 9123900 6887900 0 0 4150000 3245100 4410900 9652 684 9408 179696;179697;179698;179699;179700;179701;179702;179703;179704;179705;179706;179707;179708;179709 110657;110658;110659;110660;110661;110662;110663;110664 110659 6 IGLVLFGK Unmodified 845.53747 0.53747492 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.397 41.682 2 0.0037325 20111 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 89.673 24.411 243500000 14300000 19184000 13504000 0 0 0 25252000 23174000 21511000 1059500 1092200 1045200 14858000 16877000 14852000 0 0 0 28693000 22698000 25401000 0 0 0 9653 35 9409 179710;179711;179712;179713;179714;179715;179716;179717;179718;179719;179720;179721;179722;179723;179724 110665;110666;110667;110668;110669;110670;110671;110672;110673;110674;110675;110676 110670 12 IGLVSISDR Unmodified 958.54475 0.54474515 901 P0AF03 mog Molybdopterin adenylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.735 28.38 2 0.0018627 13289 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.181 77.194 799920000 96676000 64799000 1177000 443680 389830 0 74032000 78685000 76603000 0 0 0 60449000 58746000 62604000 0 0 0 77741000 78075000 69497000 0 0 0 9654 901 9410 179725;179726;179727;179728;179729;179730;179731;179732;179733;179734;179735;179736;179737;179738 110677;110678;110679;110680;110681;110682 110677 4 IGMAIDDLR Unmodified 1002.5168 0.51681584 1470 P37387 xylF D-xylose-binding periplasmic protein yes yes 0 0 0 By MS/MS 1 33.214 31.956 2 0.023978 15056 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 59.35 40.619 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9655 1470 9411 179739 110683 110683 1 IGMALAQR Unmodified 858.47456 0.47455709 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.269 20.658 2 2.6429E-06 8196 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 184.24 166.48 1558100000 160850000 163270000 129030000 773290 714070 900820 136500000 140760000 143550000 0 0 0 126240000 88473000 95494000 0 0 0 122560000 125980000 123000000 0 0 0 9656 1485 9412 179740;179741;179742;179743;179744;179745;179746;179747;179748;179749;179750;179751;179752;179753;179754 110684;110685;110686;110687;110688;110689;110690;110691;110692 110684 9 IGMPLLVHGEVTHADIDIFDR Unmodified 2347.1995 0.19945145 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 3 3 3 3 1 2 2 3 2 2 2 1 2 2 3 2 2 2 2 47.281 45.737 2;3;4 4.3899E-08 22334 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.93 115.89 4676400000 427050000 471120000 494290000 209640000 190010000 226750000 79321000 104240000 71635000 241960000 229690000 231970000 176680000 111870000 158540000 0 0 0 200220000 193700000 198590000 215710000 241040000 202340000 9657 104 9413 179755;179756;179757;179758;179759;179760;179761;179762;179763;179764;179765;179766;179767;179768;179769;179770;179771;179772;179773;179774;179775;179776;179777;179778;179779;179780;179781;179782;179783;179784;179785;179786;179787;179788;179789;179790;179791;179792;179793;179794;179795;179796;179797;179798;179799;179800;179801 110693;110694;110695;110696;110697;110698;110699;110700;110701;110702;110703;110704;110705;110706;110707;110708;110709;110710;110711;110712;110713 110708 19 IGMSAYGASK Unmodified 983.47462 0.47461667 1103 P15047 entA 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 16.603 17.342 2 0.00028962 5802 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 88.136 76.725 87663000 0 0 3413300 0 0 0 7573100 10679000 6472100 0 0 0 12276000 10499000 0 0 0 0 17288000 0 19462000 0 0 0 9658 1103 9414 179802;179803;179804;179805;179806;179807;179808;179809;179810;179811 110714;110715;110716;110717;110718;110719;110720;110721;110722 110722 9 IGNPEYFTDIEFR Unmodified 1599.7569 0.75692277 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.84 44.411 2 1.6408E-18 22112 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 205.53 185.77 658450000 97843000 98672000 85545000 0 0 0 0 87771000 84513000 0 0 0 0 42513000 43413000 0 0 0 0 65417000 52762000 0 0 0 9659 154 9415 179812;179813;179814;179815;179816;179817;179818;179819;179820;179821;179822;179823 110723;110724;110725;110726;110727;110728;110729;110730;110731;110732;110733;110734 110723 12 IGNQAVHEYHNDLNDAQMCLR Unmodified 2497.1227 0.12267447 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.362 23.465 3 9.9916E-07 9938 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 91.725 90.543 83819000 5965800 4152800 3450200 0 0 0 10947000 8870700 6821600 0 0 0 6403500 5642900 7000200 0 0 0 5557900 12355000 6650700 0 0 0 9660 193 9416 179824;179825;179826;179827;179828;179829;179830;179831;179832;179833;179834;179835 110735;110736;110737 110736 3 IGNRFDLVLVAAR Unmodified 1442.8358 0.83578221 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 3 2 3 13 15 22 1 1 1 26 26 28 1 1 1 15 18 18 45.085 44.013 2;3;4 1.6435E-23 13962 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 244.01 239.71 30477000000 1344900 5578400 4368500 18393000 18289000 18312000 0 0 0 1980700000 1899500000 1393300000 2058600 3434300 2413800 6223900000 4630500000 5061000000 1058600 2342200 4199400 2917100000 3123800000 3165800000 9661 384 9417 179836;179837;179838;179839;179840;179841;179842;179843;179844;179845;179846;179847;179848;179849;179850;179851;179852;179853;179854;179855;179856;179857;179858;179859;179860;179861;179862;179863;179864;179865;179866;179867;179868;179869;179870;179871;179872;179873;179874;179875;179876;179877;179878;179879;179880;179881;179882;179883;179884;179885;179886;179887;179888;179889;179890;179891;179892;179893;179894;179895;179896;179897;179898;179899;179900;179901;179902;179903;179904;179905;179906;179907;179908;179909;179910;179911;179912;179913;179914;179915;179916;179917;179918;179919;179920;179921;179922;179923;179924;179925;179926;179927;179928;179929;179930;179931;179932;179933;179934;179935;179936;179937;179938;179939;179940;179941;179942;179943;179944;179945;179946;179947;179948;179949;179950;179951;179952;179953;179954;179955;179956;179957;179958;179959;179960;179961;179962;179963;179964;179965;179966;179967;179968;179969;179970;179971;179972;179973;179974;179975;179976;179977;179978;179979;179980;179981;179982;179983;179984;179985;179986;179987;179988;179989;179990;179991;179992;179993;179994;179995;179996;179997;179998;179999;180000;180001;180002;180003;180004;180005;180006;180007;180008;180009;180010;180011;180012;180013;180014;180015;180016;180017;180018;180019;180020;180021;180022;180023;180024;180025;180026;180027;180028;180029;180030;180031;180032;180033;180034 110738;110739;110740;110741;110742;110743;110744;110745;110746;110747;110748;110749;110750;110751;110752;110753;110754;110755;110756;110757;110758;110759;110760;110761;110762;110763;110764;110765;110766;110767;110768;110769;110770;110771;110772;110773;110774;110775;110776;110777;110778;110779;110780;110781;110782;110783;110784;110785;110786;110787;110788;110789;110790;110791;110792;110793;110794;110795;110796;110797;110798;110799;110800;110801;110802;110803;110804;110805;110806;110807;110808;110809;110810;110811;110812;110813;110814;110815;110816;110817;110818;110819;110820;110821;110822;110823;110824;110825;110826;110827;110828;110829;110830;110831;110832;110833;110834;110835;110836;110837;110838;110839;110840;110841;110842;110843;110844;110845;110846;110847;110848;110849;110850;110851;110852;110853;110854;110855;110856;110857;110858;110859;110860;110861;110862;110863;110864;110865;110866;110867;110868;110869;110870;110871;110872;110873;110874;110875;110876;110877;110878;110879;110880;110881;110882;110883;110884;110885;110886;110887;110888;110889;110890;110891;110892;110893;110894;110895;110896;110897;110898;110899;110900;110901;110902;110903;110904;110905;110906;110907;110908;110909;110910;110911;110912;110913;110914;110915;110916;110917;110918;110919;110920;110921;110922;110923;110924;110925;110926;110927;110928;110929;110930;110931;110932;110933;110934;110935;110936;110937;110938;110939;110940;110941;110942;110943;110944;110945;110946;110947;110948;110949;110950;110951;110952;110953;110954;110955;110956;110957;110958;110959;110960 110929 208 IGNTEMPSR Unmodified 1003.4757 0.4756793 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 13.27 14.045 2 1.2092E-05 4039 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 163.9 109.69 2439800000 264910000 248590000 257640000 0 0 3339500 208020000 210870000 182110000 3800200 0 3655600 169140000 202140000 150070000 0 0 0 183400000 170300000 181790000 0 0 0 9662 561 9418 180035;180036;180037;180038;180039;180040;180041;180042;180043;180044;180045;180046;180047;180048;180049;180050 110961;110962;110963;110964;110965;110966;110967;110968;110969;110970;110971;110972;110973;110974 110974 11 IGNTEMPSR Oxidation (M) 1019.4706 0.47059393 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 1 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.777 11.593 2 0.090588 2798 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 47.869 29.086 99643000 8748000 8871300 6545000 0 0 0 14290000 11501000 9477500 0 0 0 4772600 3986200 6141100 0 0 0 11122000 8108000 6080200 0 0 0 9663 561 9418 180051;180052;180053;180054;180055;180056;180057;180058;180059;180060;180061;180062 110975 110975 1 IGPLFEEMHADLFR Unmodified 1673.8236 0.82356254 1066 P11071 aceK Isocitrate dehydrogenase kinase/phosphatase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 47.958 46.58 3 9.7751E-06 22593 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.498 87.149 95912000 23143000 23429000 21476000 0 0 0 0 3028500 5190800 0 0 0 1750800 2954500 0 0 0 0 4035600 4445100 6458500 0 0 0 9664 1066 9419 180063;180064;180065;180066;180067;180068;180069;180070;180071;180072 110976;110977 110977 2 IGQAHDIQIHVPYLEK Unmodified 1859.9894 0.98938232 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 3 3 3 1 2 2 3 3 3 2 2 2 3 3 3 32.348 30.945 2;3;4 1.3462E-13 12315 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 184.17 178.89 14385000000 53008000 57190000 59532000 720980 2731800 0 60682000 51827000 55347000 1703600000 1717500000 1663400000 37629000 45089000 48069000 1793100000 1710500000 1881100000 72883000 67881000 73211000 1222800000 1080200000 926990000 9665 1616 9420 180073;180074;180075;180076;180077;180078;180079;180080;180081;180082;180083;180084;180085;180086;180087;180088;180089;180090;180091;180092;180093;180094;180095;180096;180097;180098;180099;180100;180101;180102;180103;180104;180105;180106;180107;180108;180109;180110;180111;180112;180113;180114;180115;180116;180117;180118;180119;180120;180121;180122;180123;180124;180125 110978;110979;110980;110981;110982;110983;110984;110985;110986;110987;110988;110989;110990;110991;110992;110993;110994;110995;110996;110997;110998;110999;111000;111001;111002;111003;111004;111005;111006;111007;111008;111009;111010;111011;111012;111013;111014;111015;111016;111017;111018;111019;111020;111021;111022;111023;111024;111025;111026;111027;111028;111029;111030;111031;111032;111033;111034 110997 57 IGQEQLQFYR Unmodified 1280.6513 0.65133548 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.436 28.956 2 2.081E-12 13498 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 214.29 199.62 388980000 22405000 19937000 12841000 0 0 0 34996000 35679000 25507000 0 1110300 724600 28072000 33639000 30531000 0 0 0 49103000 48310000 46125000 0 0 0 9666 194 9421 180126;180127;180128;180129;180130;180131;180132;180133;180134;180135;180136;180137;180138;180139 111035;111036;111037;111038;111039;111040;111041;111042;111043;111044;111045 111039 11 IGQGIEFDYCCVHASLALR Unmodified 2208.0456 0.045593344 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.996 41.492 3 7.2649E-07 20530 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.165 96.804 164270000 36793000 34570000 27068000 0 0 467800 9375100 0 0 0 0 0 0 6339100 0 0 0 0 21986000 27671000 0 0 0 0 9667 65 9422 180140;180141;180142;180143;180144;180145;180146;180147 111046;111047;111048;111049;111050;111051;111052 111049 7 IGQINALSVIEFPGHPR Unmodified 1847.0054 0.0053667345 1785 P75867 ycbZ Putative Lon protease homolog yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.396 42.718 3 0.00012389 17276 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 67.605 64.001 111830000 4509600 5862000 6374500 1965000 2697400 2342100 0 6022500 7343900 9257800 10090000 6729800 8044200 5087500 6766300 0 0 0 0 12096000 12349000 0 0 4288700 9668 1785 9423 180148;180149;180150;180151;180152;180153;180154;180155;180156;180157;180158;180159;180160;180161;180162;180163;180164 111053;111054 111053 2 IGQLMGTSQGGMWVGTFHGLAHR Unmodified 2440.1892 0.18923789 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 36.369 36.458 4 6.9939E-07 13251 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 104.63 101.17 103000000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38656000 29901000 34439000 0 0 0 0 0 0 9669 80 9424 180165;180166;180167 111055;111056;111057 111055 3 IGQLTMR Unmodified 817.44801 0.44800799 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.329 18.758 2 0.11036 7264 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 61.561 31.362 611310000 72737000 83751000 71985000 7881300 9530100 9437800 46166000 47247000 48455000 1006400 0 910260 27988000 30223000 25458000 1397500 0 0 38836000 39154000 41771000 3691600 1779400 1901300 9670 235 9425 180168;180169;180170;180171;180172;180173;180174;180175;180176;180177;180178;180179;180180;180181;180182;180183;180184;180185;180186;180187;180188 111058;111059 111058 0 IGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKK Unmodified 4326.1431 0.14310817 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 48.667 47.31 4 6.936E-19 23358 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 115.93 114.83 187750000 13114000 9181200 0 0 0 0 17302000 24827000 21104000 0 0 0 0 20964000 26227000 0 0 0 0 27804000 27233000 0 0 0 9671 439 9426 180189;180190;180191;180192;180193;180194;180195;180196;180197 111060 111060 1 IGQPVTITTDIYGDDVK Unmodified 1833.936 0.93600934 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.291 37.47 2 5.5194E-07 18501 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.02 84.623 104700000 4520900 5902800 6017400 1885400 1923400 1432600 8651500 10159000 9442100 4236800 0 4350300 6227100 5278700 5496300 0 0 0 8252500 7555500 9264500 1966200 2139000 0 9672 1300 9427 180198;180199;180200;180201;180202;180203;180204;180205;180206;180207;180208;180209;180210;180211;180212;180213;180214;180215;180216 111061;111062;111063;111064 111063 4 IGQVVEGYR Unmodified 1019.54 0.53999412 276 P0A6S7 gpsA Glycerol-3-phosphate dehydrogenase [NAD(P)+] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.234 18.849 2 8.7157E-08 6953 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 186.13 164.83 447140000 43071000 39270000 40178000 0 0 0 39048000 35864000 33985000 0 0 0 31429000 30713000 29727000 0 0 0 37692000 42981000 43187000 0 0 0 9673 276 9428 180217;180218;180219;180220;180221;180222;180223;180224;180225;180226;180227;180228 111065;111066;111067;111068;111069;111070;111071;111072;111073;111074;111075 111071 11 IGRPPEQVLEIVG Unmodified 1405.7929 0.79291434 1874 P76569 yfgD Uncharacterized protein YfgD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 40.578 38.907 2;3 0.0029941 18019 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 62.924 48.571 1933800000 159510000 148470000 142890000 815690 742540 801370 156970000 144290000 145110000 0 0 0 164870000 159990000 147670000 0 0 0 193380000 197140000 171140000 0 0 0 9674 1874 9429 180229;180230;180231;180232;180233;180234;180235;180236;180237;180238;180239;180240;180241;180242;180243;180244;180245;180246;180247;180248;180249;180250;180251;180252;180253;180254;180255 111076;111077;111078;111079;111080;111081;111082;111083;111084;111085;111086;111087 111087 12 IGSDAYNQGLSER Unmodified 1408.6583 0.65827136 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.251 19.582 2 4.9453E-32 5462 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 268.73 263.41 7551400000 415250000 372180000 370820000 87180000 86000000 86088000 295460000 281660000 282400000 169190000 163900000 154670000 556520000 525730000 432180000 63357000 34976000 42098000 917190000 970230000 945530000 98897000 106160000 93690000 9675 480 9430 180256;180257;180258;180259;180260;180261;180262;180263;180264;180265;180266;180267;180268;180269;180270;180271;180272;180273;180274;180275;180276;180277;180278;180279 111088;111089;111090;111091;111092;111093;111094;111095;111096;111097;111098;111099;111100;111101;111102;111103;111104;111105;111106;111107;111108;111109;111110 111089 23 IGSDAYNQGLSERR Unmodified 1564.7594 0.75938238 480 P0A910 ompA Outer membrane protein A yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.098 15.504 3 0.0084923 3751 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 55.314 39.927 27689000 0 0 0 4406700 3818000 5299800 0 0 0 2569100 2172000 2531100 0 0 0 0 0 2710100 0 0 0 0 1551600 2630800 9676 480 9431 180280;180281;180282;180283;180284;180285;180286;180287;180288 111111;111112 111112 2 IGSDEMWDR Unmodified 1107.4655 0.46550855 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.647 24.496 2 4.7532E-05 10507 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 149.65 149.65 2358800000 194230000 197050000 183310000 0 0 0 193580000 196310000 204520000 1598800 0 0 187790000 177950000 162990000 0 0 0 224130000 226530000 208810000 0 0 0 9677 445 9432 180289;180290;180291;180292;180293;180294;180295;180296;180297;180298;180299;180300;180301 111113;111114;111115;111116;111117;111118;111119;111120;111121;111122;111123;111124 111123 10 IGSFEAALLAYVDR Unmodified 1523.7984 0.79839365 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 54.745 53.301 2;3 7.1742E-45 25223 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 275.48 254.61 4224300000 137270000 147020000 102210000 5873400 0 1933400 339340000 309510000 325630000 23805000 22252000 24899000 495040000 395120000 421940000 0 0 0 478390000 478800000 456470000 22310000 17426000 19042000 9678 645 9433 180302;180303;180304;180305;180306;180307;180308;180309;180310;180311;180312;180313;180314;180315;180316;180317;180318;180319;180320;180321;180322;180323;180324;180325;180326;180327;180328;180329;180330;180331;180332;180333;180334;180335;180336;180337;180338;180339 111125;111126;111127;111128;111129;111130;111131;111132;111133;111134;111135;111136;111137;111138;111139;111140;111141;111142;111143;111144;111145;111146;111147;111148;111149;111150;111151;111152 111149 28 IGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGK Unmodified 3963.8949 0.89489617 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 2 2 2 3 3 2 3 2 3 2 2 2 3 2 3 3 3 53.599 52.365 3;4;5 1.2022E-72 25634 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 265.68 264.04 5667300000 106650000 88289000 18867000 87486000 75109000 106220000 262250000 229310000 240850000 316350000 375590000 399120000 323170000 269450000 251990000 111190000 204810000 154840000 408290000 418190000 349230000 287020000 298970000 284020000 9679 645 9434 180340;180341;180342;180343;180344;180345;180346;180347;180348;180349;180350;180351;180352;180353;180354;180355;180356;180357;180358;180359;180360;180361;180362;180363;180364;180365;180366;180367;180368;180369;180370;180371;180372;180373;180374;180375;180376;180377;180378;180379;180380;180381;180382;180383;180384;180385;180386;180387;180388;180389;180390;180391;180392;180393;180394;180395;180396 111153;111154;111155;111156;111157;111158;111159;111160;111161;111162;111163;111164;111165;111166;111167;111168;111169;111170;111171;111172;111173;111174;111175;111176;111177;111178;111179;111180;111181;111182;111183;111184;111185;111186;111187 111172 35 IGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLK Unmodified 4205.0739 0.07392317 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 2 By matching By MS/MS 1 1 50.472 49.245 4 0.1655 17673 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 3.8842 3.5265 11726000 0 0 0 0 5627400 6099000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9680 645 9435 180397;180398 111188 111188 1 IGSLGMDVYENER Unmodified 1481.682 0.68204326 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 32.42 31.254 2 1.2784E-18 14705 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 177.76 173.15 350460000 0 0 0 0 0 0 0 0 0 0 0 0 0 119360000 113930000 0 0 0 0 0 117170000 0 0 0 9681 1608 9436 180399;180400;180401;180402;180403;180404;180405;180406;180407;180408 111189;111190;111191;111192;111193;111194;111195;111196;111197;111198 111191 10 IGSLVANDADSYR Unmodified 1379.6681 0.66810776 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.312 24.169 2 6.982E-24 10604 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 234.99 230 1361200000 79759000 91386000 72859000 14410000 15917000 17541000 124220000 121130000 113190000 32665000 24007000 23472000 90041000 85997000 77838000 0 0 0 117850000 108310000 115270000 10824000 12575000 11960000 9682 408 9437 180409;180410;180411;180412;180413;180414;180415;180416;180417;180418;180419;180420;180421;180422;180423;180424;180425;180426;180427;180428;180429 111199;111200;111201;111202;111203;111204;111205;111206;111207;111208;111209;111210;111211;111212;111213;111214;111215;111216;111217;111218;111219 111215 21 IGSPITDLALR Unmodified 1154.6659 0.66592292 1700 P64624 yheO Uncharacterized protein YheO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.945 38.081 2 3.006E-07 18988 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 158.76 139.66 370920000 34500000 32754000 39569000 2394500 2647200 2457700 33853000 31378000 33623000 2410000 2326700 2617600 18054000 16411000 17137000 0 0 0 30581000 32824000 28617000 2972900 2138000 1655400 9683 1700 9438 180430;180431;180432;180433;180434;180435;180436;180437;180438;180439;180440;180441;180442;180443;180444;180445;180446;180447;180448;180449;180450 111220;111221;111222;111223;111224;111225;111226;111227;111228;111229;111230;111231;111232;111233 111221 13 IGTAIFGAR Unmodified 904.51305 0.51305109 1709 P67080 yggS UPF0001 protein YggS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.746 26.598 2 3.1717E-05 12504 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 153.73 122.42 314570000 16274000 16367000 13829000 0 0 0 32033000 30629000 29701000 0 0 0 24079000 23691000 17884000 0 0 0 41988000 37060000 31032000 0 0 0 9684 1709 9439 180451;180452;180453;180454;180455;180456;180457;180458;180459;180460;180461;180462 111234;111235;111236;111237;111238;111239;111240;111241;111242;111243;111244;111245 111235 11 IGTDPTYAPFESK Unmodified 1424.6824 0.68236084 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.989 29.557 2 7.9309E-09 14234 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.65 155.69 1285600000 290970000 276390000 238620000 388020 0 417160 47988000 49159000 42091000 0 0 1749800 43286000 46813000 40792000 0 0 0 70874000 67507000 68558000 0 0 0 9685 887 9440 180463;180464;180465;180466;180467;180468;180469;180470;180471;180472;180473;180474;180475;180476;180477 111246;111247;111248;111249;111250;111251;111252 111246 7 IGTDTTYAPFSSK Unmodified 1386.6667 0.66671078 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.853 27.597 2 8.3547E-06 12660 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.51 113.82 1065000000 365840000 351200000 265530000 0 0 0 7806400 10771000 8372100 0 0 0 5577700 5558200 4476200 0 0 0 14324000 14110000 11432000 0 0 0 9686 217 9441 180478;180479;180480;180481;180482;180483;180484;180485;180486;180487;180488;180489 111253;111254;111255;111256 111254 4 IGTGATQASWR Unmodified 1146.5782 0.57817054 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.221 18.692 2 1.8661E-10 7099 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 193.38 193.38 339830000 59943000 51193000 47924000 1729300 2515600 3105600 41990000 34087000 37838000 5246100 3056800 3433100 5595600 5142100 5191000 0 0 0 10541000 9508000 11794000 0 0 0 9687 1377 9442 180490;180491;180492;180493;180494;180495;180496;180497;180498;180499;180500;180501;180502;180503;180504;180505;180506;180507 111257;111258;111259;111260;111261;111262;111263;111264;111265;111266 111261 10 IGTGCVIK Unmodified 846.46332 0.4633237 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.068 15.911 2 0.0016084 5328 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.43 82.431 1113500000 73670000 57733000 47086000 341580 427410 397870 100320000 100370000 99050000 0 0 0 89946000 68914000 94716000 0 0 0 142030000 115430000 123050000 0 0 0 9688 720 9443 180508;180509;180510;180511;180512;180513;180514;180515;180516;180517;180518;180519;180520;180521;180522 111267;111268;111269;111270;111271;111272;111273 111271 7 IGTGLPRPW Unmodified 995.55525 0.55525025 527 P0A9J4 panE 2-dehydropantoate 2-reductase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.341 34.784 2 0.00032023 17137 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 127.84 123.43 124740000 10516000 10712000 10315000 0 0 0 11675000 13607000 14473000 0 0 0 7337000 8835700 7639800 0 0 0 11334000 8943900 9353100 0 0 0 9689 527 9444 180523;180524;180525;180526;180527;180528;180529;180530;180531;180532;180533;180534 111274;111275;111276;111277 111275 4 IGTPFSDLYSK Unmodified 1226.6183 0.61830402 1869 P76537 yfeY Uncharacterized protein YfeY yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.115 36.415 2 0.021166 14339 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 58.37 42.037 56629000 0 0 0 1078600 1153700 912800 0 4056400 4255800 2761800 2696600 2511700 4337600 4772600 5409300 921480 681950 0 0 7269600 8659400 1648900 1706100 1794900 9690 1869 9445 180535;180536;180537;180538;180539;180540;180541;180542;180543;180544;180545;180546;180547;180548;180549;180550;180551;180552 111278;111279;111280;111281;111282;111283 111280 3 IGTTEVIPGLAEK Unmodified 1326.7395 0.73948179 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34.667 33.205 2 9.7866E-09 15797 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 160.98 144.78 7188600000 2424600000 2285100000 1830600000 2197200 2390500 2835500 73165000 72982000 66852000 0 0 0 34891000 34339000 30656000 0 0 0 109190000 110870000 107910000 0 0 0 9691 1219 9446 180553;180554;180555;180556;180557;180558;180559;180560;180561;180562;180563;180564;180565;180566;180567;180568;180569 111284;111285;111286;111287;111288;111289;111290;111291;111292;111293;111294;111295;111296 111287 13 IGTTGAIQPHINVGDVLVTTASVR Unmodified 2418.3231 0.32307206 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 4 2 1 1 7 3 5 1 2 2 6 4 5 1 1 1 7 6 5 1 1 1 44.509 42.999 2;3;4 1.8064E-40 20222 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 248.46 237.82 20682000000 695100000 595380000 506160000 8876900 7291600 6901800 3920300000 377140000 4009800000 15496000 17506000 17480000 1589600000 1650500000 1727400000 10157000 15076000 7294100 1913200000 1810800000 1761300000 6943900 7064800 5702000 9692 1079 9447 180570;180571;180572;180573;180574;180575;180576;180577;180578;180579;180580;180581;180582;180583;180584;180585;180586;180587;180588;180589;180590;180591;180592;180593;180594;180595;180596;180597;180598;180599;180600;180601;180602;180603;180604;180605;180606;180607;180608;180609;180610;180611;180612;180613;180614;180615;180616;180617;180618;180619;180620;180621;180622;180623;180624;180625;180626;180627;180628;180629;180630;180631;180632;180633;180634;180635;180636;180637;180638;180639;180640;180641;180642;180643;180644 111297;111298;111299;111300;111301;111302;111303;111304;111305;111306;111307;111308;111309;111310;111311;111312;111313;111314;111315;111316;111317;111318;111319;111320;111321;111322;111323;111324;111325;111326;111327;111328;111329;111330;111331;111332;111333;111334;111335;111336;111337;111338;111339;111340;111341;111342;111343;111344;111345;111346;111347;111348;111349;111350;111351;111352;111353;111354;111355;111356;111357;111358;111359;111360;111361;111362;111363;111364;111365;111366;111367;111368;111369;111370;111371;111372;111373;111374;111375;111376;111377;111378 111345 73 IGVAMLR Unmodified 758.44728 0.44727971 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.482 25.147 2 0.00547 11757 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 99.511 87.126 1298300000 146050000 0 0 0 737250 657230 159500000 167900000 163620000 1345200 963400 1287800 118070000 114360000 125100000 0 0 0 100800000 96970000 100340000 652730 0 0 9693 1608 9448 180645;180646;180647;180648;180649;180650;180651;180652;180653;180654;180655;180656;180657;180658;180659;180660 111379;111380;111381;111382 111379 4 IGVILSGCGVYDGSEIHEAVLTLLAISR Unmodified 2941.5583 0.55829331 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.611 54.125 3 1.7844E-07 26830 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.606 92.44 400730000 0 42823000 0 0 0 0 83686000 546210 72814000 0 0 0 29164000 25490000 21189000 0 0 0 39050000 44619000 41344000 0 0 0 9694 681 9449 180661;180662;180663;180664;180665;180666;180667;180668;180669;180670 111383 111383 1 IGVLGLNGAGK Unmodified 997.59203 0.59202969 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.216 27.966 2 0.00026704 9438 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 95.909 87.137 345570000 40431000 31944000 30951000 3726600 3715100 3142600 23588000 20001000 17641000 0 4052400 3074000 19378000 22856000 18898000 2927500 1126300 1042300 30015000 32469000 25862000 2977600 3285500 2463200 9695 561 9450 180671;180672;180673;180674;180675;180676;180677;180678;180679;180680;180681;180682;180683;180684;180685;180686;180687;180688;180689;180690;180691;180692;180693 111384;111385;111386;111387;111388;111389;111390;111391;111392;111393 111389 3 IGVLTSGGDAPGMNAAIR Unmodified 1698.8723 0.87230365 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.268 34.027 2 1.2806E-29 16536 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 222.25 207.57 4742100000 432070000 411810000 355340000 0 0 0 597370000 577670000 554210000 0 0 0 311990000 272590000 285410000 1178700 923850 609030 310260000 328590000 302100000 0 0 0 9696 320 9451 180694;180695;180696;180697;180698;180699;180700;180701;180702;180703;180704;180705;180706;180707;180708 111394;111395;111396;111397;111398;111399;111400;111401;111402;111403;111404 111396 11 IGVLTSGGDAPGMNAAIR Oxidation (M) 1714.8672 0.86721827 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 1 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 29.726 28.332 2 0.00027784 13565 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 68.676 64.658 32935000 5648300 0 0 0 0 0 6633300 0 9670100 0 0 0 2358800 0 0 0 0 0 4086200 4538200 0 0 0 0 9697 320 9451 180709;180710;180711;180712;180713;180714 111405 111405 144 1 IGVLVAAK Unmodified 769.50617 0.5061748 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 2 2 3 4 4 3 2 2 2 3 2 4 2 2 2 3 5 4 2 2 2 22.432 22.092 1;2 0.0057635 8938 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.086 34.183 27417000000 1787800000 1710000000 1404500000 29744000 21635000 22164000 2458200000 2334500000 2422200000 43564000 37584000 43246000 1990100000 1962300000 2133500000 33517000 22080000 21135000 2936400000 3010800000 2920000000 30705000 22579000 18644000 9698 267 9452 180715;180716;180717;180718;180719;180720;180721;180722;180723;180724;180725;180726;180727;180728;180729;180730;180731;180732;180733;180734;180735;180736;180737;180738;180739;180740;180741;180742;180743;180744;180745;180746;180747;180748;180749;180750;180751;180752;180753;180754;180755;180756;180757;180758;180759;180760;180761;180762;180763;180764;180765;180766;180767;180768;180769;180770;180771;180772;180773;180774;180775;180776;180777;180778;180779;180780;180781;180782 111406;111407;111408;111409;111410;111411;111412;111413;111414;111415;111416;111417;111418;111419;111420;111421;111422;111423;111424;111425;111426;111427;111428;111429;111430;111431;111432;111433;111434;111435;111436;111437;111438;111439;111440;111441;111442;111443;111444;111445;111446;111447;111448;111449;111450;111451;111452;111453;111454 111428 45 IGVMFGNPETTTGGNALK Unmodified 1805.8982 0.89818405 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 1 2 1 1 1 1 1 2 1 2 2 2 1 1 1 2 2 2 37.169 35.641 2;3 2.0768E-09 13811 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 145.31 139.28 1893100000 141670000 134530000 114930000 10297000 10345000 11534000 112420000 154900000 117330000 130940000 123120000 135040000 0 0 75309000 45175000 23647000 27644000 105020000 114430000 120100000 62823000 58337000 63552000 9699 343 9453 180783;180784;180785;180786;180787;180788;180789;180790;180791;180792;180793;180794;180795;180796;180797;180798;180799;180800;180801;180802;180803;180804;180805;180806;180807;180808;180809;180810;180811;180812;180813 111455;111456;111457;111458;111459;111460;111461;111462;111463;111464;111465;111466;111467 111462 13 IGVMFGNPETTTGGNALK Oxidation (M) 1821.8931 0.89309867 343 P0A7G6 recA Protein RecA yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 1 1 1 1 1 2 2 2 1 1 2 1 2 1 33.74 31.951 2 1.4774E-13 15641 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.07 123.15 92467000 10553000 4587600 4481000 0 0 0 7151800 7715700 5175900 8609100 6843900 8716400 2376700 0 0 0 0 0 4377600 10821000 4901600 0 3446600 2710200 9700 343 9453 180814;180815;180816;180817;180818;180819;180820;180821;180822;180823;180824;180825;180826;180827;180828;180829;180830;180831;180832;180833;180834 111468;111469;111470;111471;111472;111473;111474 111473 153 7 IGVNAGSLEK Unmodified 986.53966 0.53965977 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.011 19.524 2 5.2751E-05 7670 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.37 87.949 1086700000 0 89183000 79179000 0 8687000 10492000 0 0 0 0 0 0 277330000 254060000 0 0 37279000 38459000 0 0 292000000 0 0 0 9701 1649 9454 180835;180836;180837;180838;180839;180840;180841;180842;180843;180844;180845;180846;180847;180848 111475;111476;111477;111478;111479;111480;111481;111482;111483;111484;111485;111486 111475 12 IGVPFVDGGVIK Unmodified 1199.6914 0.69140938 985 P0AG48 rplU 50S ribosomal protein L21 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 44.716 43.282 2 6.4622E-05 15331 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 103.88 86.782 10124000000 1387000000 1306600000 1112500000 69177000 48588000 73100000 414540000 387070000 365170000 127070000 106450000 102910000 561880000 501330000 459500000 84902000 43190000 49190000 905760000 854310000 808830000 120750000 114780000 118920000 9702 985 9455 180849;180850;180851;180852;180853;180854;180855;180856;180857;180858;180859;180860;180861;180862;180863;180864;180865;180866;180867;180868;180869;180870;180871;180872;180873;180874;180875;180876;180877;180878;180879;180880 111487;111488;111489;111490;111491;111492;111493;111494;111495;111496;111497;111498;111499;111500;111501;111502;111503;111504;111505;111506;111507;111508;111509;111510;111511;111512;111513;111514 111502 27 IGVTDYTILGTVK Unmodified 1378.7708 0.77078192 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.059 42.544 2 1.3279E-12 21159 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 195.4 167.39 3181300000 346330000 351010000 288870000 0 0 0 255900000 249540000 204860000 0 0 0 215060000 204640000 209360000 0 0 0 253050000 277320000 325390000 0 0 0 9703 58 9456 180881;180882;180883;180884;180885;180886;180887;180888;180889;180890;180891;180892 111515;111516;111517;111518;111519;111520;111521;111522;111523;111524;111525;111526 111515 11 IGVTIYK Unmodified 792.47454 0.47454032 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.765 22.236 2 0.007515 9383 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.986 65.428 3032200000 813220000 748300000 658220000 0 0 0 84242000 92297000 102740000 0 0 0 81208000 63869000 60403000 0 0 0 98045000 118200000 111420000 0 0 0 9704 852 9457 180893;180894;180895;180896;180897;180898;180899;180900;180901;180902;180903;180904 111527;111528;111529;111530;111531;111532;111533;111534;111535;111536;111537;111538 111533 12 IGVVGLGGIAQK Unmodified 1110.6761 0.67609367 1791 P75931 yceM Putative oxidoreductase YceM yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.268 31.828 2 0.00034149 14558 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 100.02 92.824 132830000 14736000 16329000 12540000 0 0 0 13103000 11266000 13030000 0 0 0 6535000 8664300 6111400 0 0 0 9310600 10061000 11142000 0 0 0 9705 1791 9458 180905;180906;180907;180908;180909;180910;180911;180912;180913;180914;180915;180916 111539;111540;111541;111542;111543 111542 5 IGWQLELAAEK Unmodified 1256.6765 0.6764876 1936 P77739 yniA Uncharacterized protein YniA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 41.749 40.031 2 0.001034 19488 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.973 78.698 132380000 20819000 21308000 15184000 0 0 448370 17634000 14454000 13521000 0 0 0 11123000 10407000 7486600 0 0 0 0 0 0 0 0 0 9706 1936 9459 180917;180918;180919;180920;180921;180922;180923;180924;180925;180926 111544;111545;111546;111547;111548;111549;111550 111546 7 IGYAVGSIK Unmodified 906.51747 0.51746776 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.866 22.257 2 7.9119E-05 9433 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 141.52 111.71 613210000 11953000 9280200 11177000 3615200 2882300 2808200 49465000 46205000 52119000 20930000 14573000 25213000 35462000 37465000 36392000 8263000 5652800 4441000 64031000 57382000 67753000 17749000 13497000 14902000 9707 1492 9460 180927;180928;180929;180930;180931;180932;180933;180934;180935;180936;180937;180938;180939;180940;180941;180942;180943;180944;180945;180946;180947;180948;180949;180950 111551;111552;111553;111554;111555;111556;111557;111558;111559;111560;111561;111562;111563;111564;111565;111566;111567;111568;111569 111563 19 IGYIGVVPPQIMGWDK Unmodified 1771.9331 0.93311299 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.03 52.59 2 8.4002E-05 25865 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.169 77.195 207460000 27176000 28076000 27223000 0 0 0 13595000 14829000 14138000 0 0 0 15662000 13207000 11895000 0 0 0 16101000 12990000 12566000 0 0 0 9708 184 9461 180951;180952;180953;180954;180955;180956;180957;180958;180959;180960;180961;180962 111570;111571;111572 111570 3 IGYLPQEPQLNPEHTVR Unmodified 1990.0272 0.027224389 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.031 30.691 2;3 9.8733E-14 14447 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 193.15 183.83 4147900000 394170000 409990000 407100000 0 0 0 325200000 323040000 326130000 0 0 0 302190000 283140000 293420000 0 0 0 373020000 381260000 329280000 0 0 0 9709 561 9462 180963;180964;180965;180966;180967;180968;180969;180970;180971;180972;180973;180974;180975;180976;180977;180978;180979;180980;180981;180982;180983;180984;180985;180986 111573;111574;111575;111576;111577;111578;111579;111580;111581;111582;111583;111584;111585;111586;111587;111588;111589;111590;111591;111592;111593;111594 111580 22 IGYPVIIK Unmodified 901.56369 0.56368968 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.86 31.399 2 0.0026868 15323 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.415 94.397 3148500000 185580000 178250000 147990000 3542600 2968100 3363900 236260000 250610000 256740000 4288600 3956500 3853600 275440000 236770000 252790000 2944400 2076800 1995200 367420000 361630000 353040000 5425400 5345000 6222900 9710 1236 9463 180987;180988;180989;180990;180991;180992;180993;180994;180995;180996;180997;180998;180999;181000;181001;181002;181003;181004;181005;181006;181007;181008;181009;181010 111595;111596;111597;111598;111599;111600;111601;111602;111603;111604;111605;111606;111607;111608;111609;111610;111611;111612;111613;111614;111615 111598 21 IGYSGDSSSDISLKPLNYEQK Unmodified 2300.1172 0.11722119 1944 P77804 ydgA Protein YdgA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 33.121 31.601 2;3 3.7896E-43 15396 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 296.25 283.42 1108500000 35742000 38906000 24979000 2824800 2370400 2396100 136470000 128870000 129270000 36199000 39784000 39401000 73550000 88587000 67932000 2522600 1787500 0 74312000 91669000 70400000 6923300 6164700 7405100 9711 1944 9464 181011;181012;181013;181014;181015;181016;181017;181018;181019;181020;181021;181022;181023;181024;181025;181026;181027;181028;181029;181030;181031;181032;181033;181034;181035;181036;181037;181038;181039;181040;181041;181042 111616;111617;111618;111619;111620;111621;111622;111623;111624;111625;111626;111627;111628;111629;111630;111631;111632;111633;111634;111635 111619 20 IGYSGDSSSDISLKPLNYEQKDEK Unmodified 2672.2817 0.28172033 1944 P77804 ydgA Protein YdgA yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 1 1 2 2 2 28.81 27.341 3;4 2.5186E-16 10534 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 156.74 153.94 610450000 0 0 0 12852000 14549000 14601000 0 3686700 0 190320000 133040000 127450000 0 0 0 13819000 10234000 9882400 0 0 0 26737000 27184000 26103000 9712 1944 9465 181043;181044;181045;181046;181047;181048;181049;181050;181051;181052;181053;181054;181055;181056;181057;181058;181059;181060;181061;181062;181063;181064;181065 111636;111637;111638;111639;111640;111641;111642;111643;111644;111645;111646;111647 111637 12 IHADYNAFWESVGGVCDAER Unmodified 2295.0015 0.0014799231 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.472 41.972 3 3.3756E-11 17076 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 133.09 133.09 195320000 5734300 5531800 3982800 1634900 0 1998700 12366000 8749000 11003000 12384000 12703000 11877000 11857000 6043800 8165600 6098000 4535400 4671500 19577000 19224000 12904000 4487100 4753000 5036700 9713 1781 9466 181066;181067;181068;181069;181070;181071;181072;181073;181074;181075;181076;181077;181078;181079;181080;181081;181082;181083;181084;181085;181086;181087;181088 111648;111649;111650;111651;111652;111653;111654;111655;111656;111657;111658 111651 11 IHAEVPADESPEMTEGYEGFYHLASMK Unmodified 3037.3474 0.34737383 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 41.62 39.921 3;4 8.0004E-31 19970 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.32 179.03 1359900000 200930000 164770000 152390000 686310 0 0 123930000 120810000 89889000 0 0 0 99375000 93245000 103350000 0 0 0 58525000 92111000 59899000 0 0 0 9714 1333 9467 181089;181090;181091;181092;181093;181094;181095;181096;181097;181098;181099;181100;181101;181102;181103;181104;181105;181106;181107;181108;181109;181110;181111;181112;181113 111659;111660;111661;111662;111663;111664;111665;111666;111667;111668;111669;111670;111671;111672;111673;111674;111675 111660 15 IHAEVPLSEMFGYATQLR Unmodified 2061.0353 0.035346234 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 3 2 2 2 3 3 3 2 2 1 3 4 3 1 1 1 3 3 3 1 1 1 49.832 48.498 2;3;4 1.8592E-29 23607 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 279.77 278 33371000000 3020200000 3140500000 2593200000 33181000 27361000 26996000 2255100000 1992300000 2142400000 34314000 35402000 24618000 2693300000 2776300000 2447000000 10066000 15213000 13686000 3455000000 3280900000 3292300000 20277000 18610000 23353000 9715 264 9468 181114;181115;181116;181117;181118;181119;181120;181121;181122;181123;181124;181125;181126;181127;181128;181129;181130;181131;181132;181133;181134;181135;181136;181137;181138;181139;181140;181141;181142;181143;181144;181145;181146;181147;181148;181149;181150;181151;181152;181153;181154;181155;181156;181157;181158;181159;181160;181161;181162;181163;181164;181165;181166;181167;181168 111676;111677;111678;111679;111680;111681;111682;111683;111684;111685;111686;111687;111688;111689;111690;111691;111692;111693;111694;111695;111696;111697;111698;111699;111700;111701;111702;111703;111704;111705;111706;111707;111708;111709;111710;111711;111712;111713;111714;111715;111716;111717;111718;111719;111720 111692 45 IHAVSIK Unmodified 766.47012 0.47012364 562 P0A9W6 ibaG Acid stress protein IbaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.875 12.732 2 0.0020767 3475 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 118.69 78.001 1001600000 85814000 75550000 75586000 0 599780 0 86538000 67967000 68798000 0 0 0 85847000 70672000 60623000 0 0 0 113270000 99526000 110780000 0 0 0 9716 562 9469 181169;181170;181171;181172;181173;181174;181175;181176;181177;181178;181179;181180;181181 111721;111722;111723;111724;111725;111726;111727;111728;111729;111730;111731;111732 111721 12 IHCSILAEDAIK Unmodified 1368.7071 0.7071358 721 P0ACD4 iscU Iron-sulfur cluster assembly scaffold protein IscU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 2 2 2 1 1 2 2 1 1 1 2 2 1 2 1 2 1 1 1 23.978 23.065 2;3 7.1288E-17 9732 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 211.78 192.8 2015400000 212560000 220320000 194150000 9737300 7848000 1766500 115120000 133920000 128010000 3108600 2750600 2470100 286100000 96489000 99648000 0 0 0 158730000 140140000 197210000 1446900 1788400 2090800 9717 721 9470 181182;181183;181184;181185;181186;181187;181188;181189;181190;181191;181192;181193;181194;181195;181196;181197;181198;181199;181200;181201;181202;181203;181204;181205;181206;181207;181208;181209;181210;181211 111733;111734;111735;111736;111737;111738;111739;111740;111741;111742;111743;111744;111745 111743 13 IHDKPSTEAITSFR Unmodified 1600.8209 0.82092001 1181 P21499 rnr Ribonuclease R yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 17.113 17.711 2;3 4.2091E-11 6320 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.83 132.26 170180000 35496000 39336000 35708000 1090200 1333200 0 11348000 9234700 9793200 2527200 2510000 2186000 2834700 0 1918300 0 0 0 4242800 5726100 4893100 0 0 0 9718 1181 9471 181212;181213;181214;181215;181216;181217;181218;181219;181220;181221;181222;181223;181224;181225;181226;181227;181228 111746;111747;111748;111749;111750;111751 111750 4 IHEGESGR Unmodified 883.41479 0.41479361 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 4.602 5.4742 2 0.01678 927 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 67.981 25.208 120200000 0 0 0 0 0 0 3006600 2150100 2954200 0 0 0 3442700 93480000 0 0 0 0 6968600 4068500 4133200 0 0 0 9719 1171 9472 181229;181230;181231;181232;181233;181234;181235;181236 111752;111753;111754;111755;111756 111756 5 IHEGESGRR Unmodified 1039.5159 0.51590463 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 1 By MS/MS By matching 1 1 4.5908 5.4175 2 0.0087775 941 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 68.915 0 91442000 0 0 0 0 0 0 35212000 0 0 0 0 0 0 0 0 0 0 0 0 0 56231000 0 0 0 9720 1171 9473 181237;181238 111757 111757 1 IHELEGLMMQHAQNLEFEEAAQIR Unmodified 2836.3636 0.36363302 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 42.722 40.966 3 0.032389 20141 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 42.322 39.28 14110000 5060500 3392500 0 0 0 0 5656500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9721 426 9474 181239;181240;181241 111758 111758 0 IHGLADCMQGEMISLPGNR Oxidation (M) 2113.9707 0.97071384 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 1 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 3 3 1 2 2 3 1 1 2 2 1 1 3 2 35.593 33.879 3 5.0162E-06 15214 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.24 84.049 202200000 0 10500000 6666900 0 0 0 15418000 3707400 6717900 12782000 12417000 5027300 11007000 14992000 19077000 2791900 0 1427100 19853000 23225000 9106900 5555900 13079000 8849500 9722 645 9475 181242;181243;181244;181245;181246;181247;181248;181249;181250;181251;181252;181253;181254;181255;181256;181257;181258;181259;181260;181261;181262;181263;181264;181265;181266;181267;181268;181269;181270;181271;181272;181273;181274;181275 111759;111760;111761;111762;111763;111764;111765;111766;111767;111768;111769;111770;111771;111772;111773 111770 348;349 12 IHGLADCMQGEMISLPGNR Unmodified 2097.9758 0.97579922 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 38.35 36.621 2;3 1.1412E-67 16913 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 384.2 382.76 10032000000 310730000 324360000 339410000 55848000 54025000 58061000 654510000 702700000 662690000 239780000 202280000 190540000 833120000 914830000 791070000 81565000 53173000 56703000 919240000 1052500000 895360000 228260000 217800000 193010000 9723 645 9475 181276;181277;181278;181279;181280;181281;181282;181283;181284;181285;181286;181287;181288;181289;181290;181291;181292;181293;181294;181295;181296;181297;181298;181299;181300;181301;181302;181303;181304;181305;181306;181307;181308;181309;181310;181311;181312;181313;181314;181315;181316;181317;181318;181319;181320 111774;111775;111776;111777;111778;111779;111780;111781;111782;111783;111784;111785;111786;111787;111788;111789;111790;111791;111792;111793;111794;111795;111796;111797;111798;111799;111800;111801;111802;111803;111804;111805;111806 111806 31 IHGVNYSISSACATSAHCIGNAVEQIQLGK Unmodified 3184.5394 0.53936555 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 1 3 3 3 3 3 3 38.018 36.326 3;4;5 9.9975E-96 17885 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 316.07 313.13 7413100000 927490000 856480000 800080000 2378300 2243100 2250700 611880000 545430000 490710000 0 0 1467600 464360000 514890000 440200000 0 0 0 522960000 610340000 619980000 0 0 0 9724 489 9476 181321;181322;181323;181324;181325;181326;181327;181328;181329;181330;181331;181332;181333;181334;181335;181336;181337;181338;181339;181340;181341;181342;181343;181344;181345;181346;181347;181348;181349;181350;181351;181352;181353;181354;181355;181356;181357;181358;181359;181360 111807;111808;111809;111810;111811;111812;111813;111814;111815;111816;111817;111818;111819;111820;111821;111822;111823;111824;111825;111826;111827;111828;111829;111830;111831;111832 111810 26 IHHAYLFSGTR Unmodified 1300.6677 0.66765425 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 13.911 14.795 2 0.047202 4711 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 55.064 35.277 20492000 0 0 0 0 0 0 0 8014400 0 0 0 0 0 2467700 0 0 0 0 3837000 3286100 2886900 0 0 0 9725 127 9477 181361;181362;181363;181364;181365 111833 111833 1 IHHHGLLAMTDCSTPEDGLACQK Unmodified 2590.1727 0.17266113 314 P0A761 nanE Putative N-acetylmannosamine-6-phosphate 2-epimerase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 23.167 22.471 4 9.5245E-07 9189 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 101.92 101.02 151890000 19244000 25506000 16370000 0 0 0 8622000 8369000 0 0 0 0 15815000 14150000 13434000 0 0 0 10201000 9579600 10604000 0 0 0 9726 314 9478 181366;181367;181368;181369;181370;181371;181372;181373;181374;181375;181376 111834;111835;111836;111837 111837 4 IHIGLDNYSGGR Unmodified 1300.6524 0.65239812 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 24.073 23.176 2 0.00035362 9973 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.18 77.599 121580000 8476300 9061200 10845000 0 0 245830 14390000 11031000 6818500 0 0 0 9603300 8114900 5428600 0 0 0 9972500 16358000 11231000 0 0 0 9727 280 9479 181377;181378;181379;181380;181381;181382;181383;181384;181385;181386;181387;181388;181389 111838 111838 1 IHLDASMSCAGDPIPLAPETVAER Oxidation (M) 2565.2203 0.22032283 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.687 36.832 3 5.9574E-10 18619 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.84 113.86 115980000 0 6198000 4635200 1199300 1144000 1106900 20057000 16576000 17439000 2195300 2190800 1915100 5272000 8845100 7905400 0 0 0 4645500 6560700 8090700 0 0 0 9728 1046 9480 181390;181391;181392;181393;181394;181395;181396;181397;181398;181399;181400;181401;181402;181403;181404;181405;181406 111839;111840;111841 111839 467 3 IHLDASMSCAGDPIPLAPETVAER Unmodified 2549.2254 0.2254082 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 1 1 3 3 3 1 1 1 3 3 3 1 1 1 42.706 41.088 2;3;4 1.8905E-83 20466 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 364.59 359.53 11432000000 845120000 833900000 725100000 23843000 25287000 25093000 1417600000 1379600000 1217600000 70064000 0 53934000 821420000 725250000 831380000 30920000 13669000 21575000 826660000 771960000 719150000 17237000 19486000 16634000 9729 1046 9480 181407;181408;181409;181410;181411;181412;181413;181414;181415;181416;181417;181418;181419;181420;181421;181422;181423;181424;181425;181426;181427;181428;181429;181430;181431;181432;181433;181434;181435;181436;181437;181438;181439;181440;181441;181442;181443;181444;181445;181446;181447;181448;181449;181450;181451;181452;181453 111842;111843;111844;111845;111846;111847;111848;111849;111850;111851;111852;111853;111854;111855;111856;111857;111858;111859;111860;111861;111862;111863;111864;111865;111866;111867;111868;111869;111870;111871;111872;111873;111874;111875;111876;111877;111878;111879;111880;111881;111882;111883 111842 40 IHLFMGGVGNDGHIAFNEPASSLASR Unmodified 2696.3129 0.31291808 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 40.18 38.514 3;4 2.6466E-22 18550 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 164.96 161.98 1375900000 182920000 173940000 148540000 0 0 807440 129810000 124970000 147020000 0 0 0 68974000 73526000 59861000 0 0 0 78809000 96394000 90368000 0 0 0 9730 313 9481 181454;181455;181456;181457;181458;181459;181460;181461;181462;181463;181464;181465;181466;181467;181468;181469;181470;181471;181472;181473;181474;181475;181476;181477;181478 111884;111885;111886;111887;111888;111889;111890;111891;111892;111893;111894;111895;111896;111897;111898;111899;111900;111901;111902;111903;111904;111905;111906;111907 111901 24 IHLTPAER Unmodified 935.51886 0.51886475 947 P0AFJ7 pitA Low-affinity inorganic phosphate transporter 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.768 13.46 2 0.0021719 3374 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 102.72 82.437 236430000 0 7752500 8658700 2215300 1637500 1715700 14655000 15601000 16436000 14960000 9824000 11885000 12352000 13229000 15094000 0 0 0 20890000 24128000 23216000 8381900 7400200 6399800 9731 947 9482 181479;181480;181481;181482;181483;181484;181485;181486;181487;181488;181489;181490;181491;181492;181493;181494;181495;181496;181497;181498 111908;111909;111910;111911;111912;111913;111914;111915;111916;111917;111918;111919;111920 111909 13 IHNGDMQQTVFGILGINEEEQR Unmodified 2527.2125 0.21253533 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 49.503 48.123 3 3.2391E-30 23459 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 202.95 200.07 912180000 65582000 56790000 57992000 0 0 0 74595000 67278000 59035000 0 0 0 95514000 71185000 74110000 0 0 0 91652000 98506000 85291000 14653000 0 0 9732 1189 9483 181499;181500;181501;181502;181503;181504;181505;181506;181507;181508;181509;181510;181511 111921;111922;111923;111924;111925;111926;111927;111928;111929;111930 111922 10 IHPDKDVDGFHPYNVGR Unmodified 1964.9493 0.94930842 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 2 2 2 18.999 19.553 2;3;4 9.1743E-06 7437 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 88.133 80.896 1060600000 87184000 130550000 128290000 0 0 0 87079000 77048000 58289000 0 0 0 59143000 67919000 51329000 0 0 0 110130000 106710000 96980000 0 0 0 9733 1237 9484 181512;181513;181514;181515;181516;181517;181518;181519;181520;181521;181522;181523;181524;181525;181526;181527;181528;181529;181530;181531;181532;181533;181534;181535;181536 111931;111932;111933;111934;111935;111936;111937;111938;111939;111940;111941;111942;111943;111944;111945;111946;111947;111948 111936 16 IHPGEAMDK Oxidation (M) 1012.4648 0.46478027 508 P0A9C5 glnA Glutamine synthetase yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.137 10.779 2 0.13066 2473 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 42.287 26.655 69969000 9106400 10272000 9907600 0 0 0 7090800 6250700 6997700 6599600 4239000 3792300 0 2245400 3157400 0 0 0 0 125740 184210 0 0 0 9734 508 9485 181537;181538;181539;181540;181541;181542;181543;181544;181545;181546;181547;181548;181549 111949 111949 1 IHPGEAMDK Unmodified 996.46987 0.46986564 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.08 11.922 2 0.0056668 3070 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.665 67.21 1988900000 276450000 241910000 253990000 0 5009700 0 129400000 130090000 124390000 0 0 0 137270000 123730000 125290000 0 0 0 149460000 145000000 146940000 0 0 0 9735 508 9485 181550;181551;181552;181553;181554;181555;181556;181557;181558;181559;181560;181561;181562 111950;111951;111952;111953;111954;111955;111956;111957;111958 111953 9 IHRLEDWGR Unmodified 1180.6101 0.61013937 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.121 15.434 3 0.0029842 4274 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 61.56 38.919 66057000 0 0 0 4881800 4324700 3842900 0 0 0 5823100 5795100 5122300 0 0 0 6439300 5656200 6543600 0 0 0 6105300 5707100 5815800 9736 66 9486 181563;181564;181565;181566;181567;181568;181569;181570;181571;181572;181573;181574 111959;111960;111961;111962;111963 111960 5 IHSEEDERPIGR Unmodified 1436.7008 0.70080487 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 3 3 3 3 3 3 4 5 6 4 3 2 8 11 9 3 3 3 4 6 5 12.494 12.932 2;3;4 8.7844E-61 2431 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 322.47 302.48 104410000000 1923900000 1881400000 1807500000 151270000 147060000 145770000 674480000 1215300000 1131800000 7146500000 6183700000 6735600000 1262600000 1236900000 782720000 12192000000 16455000000 16044000000 1654700000 1498100000 1445400000 7830700000 7623200000 7240100000 9737 383 9487 181575;181576;181577;181578;181579;181580;181581;181582;181583;181584;181585;181586;181587;181588;181589;181590;181591;181592;181593;181594;181595;181596;181597;181598;181599;181600;181601;181602;181603;181604;181605;181606;181607;181608;181609;181610;181611;181612;181613;181614;181615;181616;181617;181618;181619;181620;181621;181622;181623;181624;181625;181626;181627;181628;181629;181630;181631;181632;181633;181634;181635;181636;181637;181638;181639;181640;181641;181642;181643;181644;181645;181646;181647;181648;181649;181650;181651;181652;181653;181654;181655;181656;181657;181658;181659;181660;181661;181662;181663;181664;181665;181666;181667;181668;181669;181670;181671;181672;181673;181674;181675;181676;181677;181678;181679 111964;111965;111966;111967;111968;111969;111970;111971;111972;111973;111974;111975;111976;111977;111978;111979;111980;111981;111982;111983;111984;111985;111986;111987;111988;111989;111990;111991;111992;111993;111994;111995;111996;111997;111998;111999;112000;112001;112002;112003;112004;112005;112006;112007;112008;112009;112010;112011;112012;112013;112014;112015;112016;112017;112018;112019;112020;112021;112022;112023;112024;112025;112026;112027;112028;112029;112030;112031;112032;112033;112034;112035;112036;112037;112038;112039;112040;112041;112042;112043;112044;112045;112046;112047;112048;112049;112050;112051;112052;112053;112054;112055;112056;112057;112058;112059;112060;112061;112062;112063 112006 95 IHSFESCGTVDGPGIR Unmodified 1730.8046 0.80461802 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 1 21.784 21.742 2;3 2.7429E-39 8465 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 259.55 257.03 1873400000 149680000 130340000 107360000 1995200 1816500 2787700 181700000 189890000 210800000 5917900 0 4596100 170370000 150960000 142130000 0 0 0 134260000 144320000 139160000 1529000 1465100 2298700 9738 540 9488 181680;181681;181682;181683;181684;181685;181686;181687;181688;181689;181690;181691;181692;181693;181694;181695;181696;181697;181698;181699;181700;181701;181702;181703;181704;181705;181706;181707;181708;181709;181710;181711 112064;112065;112066;112067;112068;112069;112070;112071;112072;112073;112074;112075;112076;112077;112078;112079;112080;112081;112082;112083 112080 20 IHTDFEK Unmodified 888.43413 0.43413207 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.165 12.767 2 0.006633 3327 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 94.662 62.549 1044800000 82640000 98158000 107120000 0 1941000 2963200 0 0 100550000 2137000 1114000 1172800 113340000 96036000 82495000 1865500 398970 790640 111730000 120150000 117460000 0 1197800 1576300 9739 680 9489 181712;181713;181714;181715;181716;181717;181718;181719;181720;181721;181722;181723;181724;181725;181726;181727;181728;181729;181730;181731 112084;112085;112086 112086 3 IHTFIATSPMHIATK Unmodified 1666.8865 0.88649715 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 2 2 24.798 23.932 3;4 4.689E-05 10564 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.753 82.836 165050000 47981000 45134000 39609000 0 0 0 0 0 3070600 0 0 0 6614200 2720500 7188100 0 0 0 8050400 0 4684100 0 0 0 9740 204 9490 181732;181733;181734;181735;181736;181737;181738;181739;181740;181741;181742;181743;181744;181745;181746;181747 112087;112088;112089;112090 112089 4 IHTRDMRMMGGLWSK 2 Oxidation (M) 1849.875 0.87496296 932 P0AFE8 nuoM NADH-quinone oxidoreductase subunit M yes yes 0 2 2 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 20.389 20.717 2 0.01288 7617 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 50.292 47.342 195870000 0 0 0 0 0 0 22840000 26702000 22051000 0 0 0 0 27367000 29527000 0 0 0 20361000 20515000 26507000 0 0 0 9741 932 9491 181748;181749;181750;181751;181752;181753;181754;181755 112091 112091 414;415;416 1 IHTSACTVAVMPELPDAELPDINPADLR Unmodified 3044.4947 0.49470677 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 51.852 50.6 3 5.3154E-16 24876 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.37 140.41 275990000 32826000 29698000 29909000 0 0 0 27477000 20886000 15996000 0 0 0 20448000 23399000 22465000 0 0 0 28260000 0 24630000 0 0 0 9742 345 9492 181756;181757;181758;181759;181760;181761;181762;181763;181764;181765;181766 112092;112093;112094;112095;112096;112097;112098;112099;112100 112095 9 IHTSYENVLGK Unmodified 1259.651 0.65100113 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 18.805 19.324 2;3 1.1405E-07 7344 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 202.2 173.99 1852200000 137590000 146510000 118190000 0 0 0 187680000 203020000 189150000 1492900 0 0 132960000 144700000 131560000 0 0 0 157370000 157360000 144570000 0 0 0 9743 128 9493 181767;181768;181769;181770;181771;181772;181773;181774;181775;181776;181777;181778;181779;181780;181781;181782;181783;181784;181785;181786;181787;181788;181789;181790;181791 112101;112102;112103;112104;112105;112106;112107;112108;112109;112110;112111;112112;112113;112114;112115;112116;112117;112118;112119;112120;112121;112122;112123;112124 112107 24 IHVATVQSLVK Unmodified 1193.7132 0.71320746 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 22.892 22.232 2;3 0.00027654 9881 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.692 60.506 168410000 0 0 0 0 0 0 16594000 20965000 19977000 0 0 0 18878000 16298000 15767000 0 0 0 17187000 18944000 23804000 0 0 0 9744 193 9494 181792;181793;181794;181795;181796;181797;181798;181799;181800;181801;181802;181803;181804;181805;181806;181807;181808;181809 112125;112126;112127 112125 2 IHVAVAQEVPGTGVDTPEDLER Unmodified 2331.1707 0.17065374 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 1 1 1 33.721 32.274 2;3 2.1902E-21 14753 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 202.82 202.82 1478800000 119120000 126480000 104600000 0 0 0 128880000 108520000 122010000 1782400 0 0 108040000 107370000 106660000 0 0 0 141160000 167180000 136960000 0 0 0 9745 97 9495 181810;181811;181812;181813;181814;181815;181816;181817;181818;181819;181820;181821;181822;181823;181824;181825;181826;181827;181828 112128;112129;112130;112131;112132;112133;112134;112135;112136;112137;112138;112139;112140;112141;112142 112141 10 IHVVQGDITK Unmodified 1108.6241 0.6240581 420 P0A8D6 ymdB O-acetyl-ADP-ribose deacetylase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.963 14.851 2 0.00031552 4465 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 111.06 102.64 193960000 31484000 0 0 199670 0 750390 30984000 30147000 33127000 0 0 0 9500000 9767600 10391000 0 0 0 13568000 11594000 12450000 0 0 0 9746 420 9496 181829;181830;181831;181832;181833;181834;181835;181836;181837;181838;181839;181840 112143;112144;112145;112146;112147 112146 5 IIAADNGDAWVEVK Unmodified 1499.762 0.76200815 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 3 1 2 2 1 1 1 1 1 1 1 1 2 2 3 2 1 1 35.617 34.063 2 5.0676E-11 16686 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.65 145.87 2359300000 148750000 114540000 120030000 42054000 38686000 37369000 13326000 169030000 183950000 129780000 142780000 132010000 134770000 120560000 118540000 11079000 6836300 6146500 182880000 193030000 178620000 50375000 43039000 41132000 9747 293 9497 181841;181842;181843;181844;181845;181846;181847;181848;181849;181850;181851;181852;181853;181854;181855;181856;181857;181858;181859;181860;181861;181862;181863;181864;181865;181866;181867;181868;181869;181870;181871;181872;181873;181874;181875 112148;112149;112150;112151;112152;112153;112154;112155;112156;112157;112158;112159;112160;112161;112162;112163;112164;112165;112166;112167;112168;112169;112170;112171;112172;112173;112174;112175;112176;112177;112178;112179;112180;112181;112182;112183;112184;112185;112186;112187;112188;112189;112190;112191;112192;112193;112194;112195;112196;112197;112198 112158 51 IIAATHQNLEQR Unmodified 1392.7474 0.74736113 925 P0AFB8 glnG Nitrogen regulation protein NR(I) yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 12.919 13.619 2 0.00011021 4041 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 91.584 80.754 13944000 4287800 4132000 5523700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9748 925 9498 181876;181877;181878 112199 112199 1 IIAATIENAQPILQIDNAR Unmodified 2063.1375 0.13750312 12 CON__P08779 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 46.323 44.272 2;3 9.1479E-05 17790 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 70.555 67.457 38537000 0 0 0 1751100 1672600 1565200 0 0 0 10753000 10152000 12643000 0 0 0 0 0 0 0 0 0 0 0 0 + 9749 12 9499 181879;181880;181881;181882;181883;181884;181885;181886;181887 112200;112201;112202;112203 112202 3 IIADAAIDAGR Unmodified 1084.5877 0.58767259 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.992 23.185 2 0.0014767 10222 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 100.57 75.793 283740000 15159000 20162000 15624000 1345300 0 1189200 25144000 24878000 20413000 0 0 5428700 19993000 16022000 17164000 4302900 3602600 2997500 28182000 27563000 22388000 3735100 4265100 4179000 9750 1787 9500 181888;181889;181890;181891;181892;181893;181894;181895;181896;181897;181898;181899;181900;181901;181902;181903;181904;181905;181906;181907;181908 112204;112205;112206;112207;112208;112209;112210;112211;112212;112213;112214;112215;112216;112217 112210 9 IIADAAIDAGRDVQFIEQFR Unmodified 2247.1648 0.1647805 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 49.321 49.024 3 0.0033464 18124 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 62.765 58.316 17893000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6326400 3616900 4035200 0 0 3914900 0 0 0 9751 1787 9501 181909;181910;181911;181912 112218;112219 112219 0 IIAESISLPEIPADVLAR Unmodified 1906.0775 0.077528625 1782 P75838 ycaO Ribosomal protein S12 methylthiotransferase accessory factor YcaO yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.32 52.872 2 6.1204E-18 25950 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 178.15 169.84 460150000 17503000 17313000 15245000 0 0 0 30475000 26731000 25021000 0 0 0 50880000 44211000 42533000 0 0 0 64260000 61276000 64704000 0 0 0 9752 1782 9502 181913;181914;181915;181916;181917;181918;181919;181920;181921;181922;181923;181924 112220;112221;112222;112223;112224;112225 112220 6 IIAGEIQARPEQVDAAVR Unmodified 1935.0538 0.05377349 1586 P46837 yhgF Protein YhgF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 1 1 1 26.547 25.457 2;3 1.3303E-09 10998 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.29 105.29 1081300000 80894000 89587000 75701000 1557500 1824500 2185400 90664000 93907000 92132000 3569300 2903500 2889600 81208000 64783000 67364000 1225500 1261200 2087600 104830000 116200000 98588000 2338100 1763100 1832500 9753 1586 9503 181925;181926;181927;181928;181929;181930;181931;181932;181933;181934;181935;181936;181937;181938;181939;181940;181941;181942;181943;181944;181945;181946;181947;181948;181949;181950;181951;181952;181953;181954;181955;181956;181957;181958;181959 112226;112227;112228;112229;112230;112231;112232;112233;112234;112235;112236;112237;112238;112239;112240;112241;112242;112243;112244;112245 112241 20 IIAGLEHQTSGHIR Unmodified 1530.8267 0.82667409 1121 P16676 cysA Sulfate/thiosulfate import ATP-binding protein CysA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.553 15.149 3 6.0057E-06 4945 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 104.17 78.051 159080000 5018600 5229000 4417200 0 0 0 8952700 7236200 12541000 6471500 6660200 6670800 10324000 10492000 7700600 0 0 0 22450000 18367000 10223000 5958200 3903100 6465900 9754 1121 9504 181960;181961;181962;181963;181964;181965;181966;181967;181968;181969;181970;181971;181972;181973;181974;181975;181976;181977 112246;112247;112248;112249;112250 112246 5 IIAGNIINFSR Unmodified 1216.6928 0.69280637 1042 P0C0S1 mscS Small-conductance mechanosensitive channel yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.593 37.977 2 1.7568E-05 13384 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 163.16 122.13 550970000 23367000 21806000 18877000 10358000 9764100 8751700 51145000 51540000 54575000 24589000 24676000 24747000 34808000 30974000 35327000 5567900 2988600 3654800 30662000 29369000 33928000 6275200 6104700 7117000 9755 1042 9505 181978;181979;181980;181981;181982;181983;181984;181985;181986;181987;181988;181989;181990;181991;181992;181993;181994;181995;181996;181997;181998;181999;182000;182001 112251;112252;112253;112254;112255;112256;112257;112258;112259;112260;112261;112262;112263 112259 7 IIAIDNSPAMIER Unmodified 1441.7599 0.75989966 1847 P76290 cmoA tRNA (cmo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.618 33.957 2 3.7068E-12 15708 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 181.62 171.1 565360000 55603000 55492000 50837000 0 0 0 44577000 43298000 38026000 1266200 0 0 38788000 36673000 43216000 0 0 0 48114000 54171000 55300000 0 0 0 9756 1847 9506 182002;182003;182004;182005;182006;182007;182008;182009;182010;182011;182012;182013;182014 112264;112265;112266;112267;112268;112269;112270;112271;112272;112273 112271 10 IIAIDTNPK Unmodified 983.56515 0.56514624 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.886 21.788 2 0.00024392 8383 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 122.74 114.28 1850000000 165950000 154020000 131630000 1131900 0 909760 174340000 170720000 168800000 2282400 2796600 1410700 147220000 138940000 144300000 0 0 618150 155290000 148920000 140690000 0 0 0 9757 1253 9507 182015;182016;182017;182018;182019;182020;182021;182022;182023;182024;182025;182026;182027;182028;182029;182030;182031;182032 112274;112275;112276;112277;112278;112279;112280;112281;112282;112283;112284 112284 11 IIAMMVGR Unmodified 889.48776 0.48776432 593 P0AAG8 mglA Galactose/methyl galactoside import ATP-binding protein MglA yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 28.99 27.952 2 0.081317 12907 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 53.163 45.933 18164000 5367200 6177100 6619500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9758 593 9508 182033;182034;182035 112285 112285 1 IIAPEGSDNAFQTSNPK Unmodified 1787.869 0.86899241 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 2 2 2 2 25.891 24.8 2;3 1.0167E-13 11370 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 203.51 198.24 1626600000 321470000 301950000 294880000 2421200 0 1443900 93955000 107730000 100310000 0 0 0 67018000 43620000 66125000 0 0 0 73020000 75013000 77677000 0 0 0 9759 219 9509 182036;182037;182038;182039;182040;182041;182042;182043;182044;182045;182046;182047;182048;182049;182050;182051;182052;182053;182054;182055;182056;182057;182058;182059;182060;182061 112286;112287;112288;112289;112290;112291;112292;112293;112294;112295;112296;112297;112298;112299;112300;112301;112302;112303;112304;112305;112306 112287 21 IIASEFLADDDQR Unmodified 1491.7205 0.72053726 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 2 1 1 36.66 35.038 2;3 4.2845E-09 16829 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 171.87 133.57 747590000 102080000 92992000 102050000 0 0 0 73058000 58363000 70143000 0 0 0 35320000 35114000 34211000 0 0 0 51403000 43450000 49407000 0 0 0 9760 507 9510 182062;182063;182064;182065;182066;182067;182068;182069;182070;182071;182072;182073;182074;182075;182076;182077;182078 112307;112308;112309;112310;112311;112312;112313;112314;112315;112316;112317;112318 112315 7 IIASEFLADDDQRK Unmodified 1619.8155 0.81550028 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.72 27.472 3 6.2416E-06 12575 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.85 99.384 243310000 37740000 33170000 28605000 0 0 0 20448000 20579000 22918000 0 0 0 8790700 8997800 11295000 0 0 0 19284000 18739000 12739000 0 0 0 9761 507 9511 182079;182080;182081;182082;182083;182084;182085;182086;182087;182088;182089;182090 112319;112320;112321;112322;112323;112324;112325 112323 7 IIASVAEK Unmodified 829.49092 0.49091866 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.932 14.808 2 0.0010836 4752 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.82 72.597 4728500000 451290000 426090000 392290000 1092200 0 0 502680000 519790000 470390000 0 0 0 311110000 288870000 280940000 0 0 0 362110000 329090000 392760000 0 0 0 9762 382 9512 182091;182092;182093;182094;182095;182096;182097;182098;182099;182100;182101;182102;182103 112326;112327;112328;112329;112330;112331;112332;112333;112334;112335;112336;112337 112333 12 IIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYK Unmodified 3624.7606 0.76059172 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 42.918 41.341 4;5 2.4974E-25 20434 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.73 162.09 1406800000 96341000 92210000 88177000 0 0 0 207450000 157180000 136970000 0 0 0 87300000 90174000 92895000 0 0 0 121390000 108980000 127710000 0 0 0 9763 1510 9513 182104;182105;182106;182107;182108;182109;182110;182111;182112;182113;182114;182115;182116;182117;182118;182119;182120;182121;182122;182123;182124;182125;182126;182127 112338;112339;112340;112341;112342;112343;112344;112345;112346;112347;112348 112338 11 IIAVIDR Unmodified 798.49634 0.49633839 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 24.188 23.183 2 0.0023307 7333 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 114.19 82.072 529250000 30149000 31490000 30399000 11213000 11846000 9162400 21467000 22647000 23310000 36195000 36087000 33177000 0 0 0 0 0 0 76242000 72952000 27365000 17839000 17905000 19801000 9764 1691 9514 182128;182129;182130;182131;182132;182133;182134;182135;182136;182137;182138;182139;182140;182141;182142;182143;182144;182145;182146;182147 112349;112350;112351;112352;112353;112354;112355;112356;112357;112358;112359;112360;112361;112362;112363 112359 15 IIAVIHSEK Unmodified 1008.5968 0.59678072 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 14.372 15.148 2 0.0002568 4927 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.62 75.901 538950000 56587000 56616000 55516000 379970 0 0 31627000 40618000 40029000 0 0 0 30672000 28744000 37794000 0 0 0 46591000 56799000 56975000 0 0 0 9765 1348 9515 182148;182149;182150;182151;182152;182153;182154;182155;182156;182157;182158;182159;182160 112364;112365;112366;112367;112368;112369;112370;112371 112369 8 IIAVLEPR Unmodified 909.56475 0.56475231 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.247 28.678 2 0.0034662 12831 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 91.9 60.611 826110000 56100000 54798000 43845000 0 0 0 69428000 76882000 68202000 1681500 1649000 1100100 64201000 63617000 59541000 0 0 0 82996000 94977000 85815000 0 1280700 0 9766 1500 9516 182161;182162;182163;182164;182165;182166;182167;182168;182169;182170;182171;182172;182173;182174;182175;182176 112372;112373;112374;112375;112376;112377;112378;112379;112380;112381;112382 112381 9 IIAYGDADVMVAGGAEK Unmodified 1678.8236 0.82362212 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 6 4 4 4 5 4 5 4 5 1 37.356 35.669 2 1.2643E-09 16555 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.77 128.28 580760000 8421400 14395000 10189000 0 0 0 74703000 44858000 35055000 0 0 0 64310000 58235000 59200000 0 0 0 79193000 64001000 67691000 505160 0 0 9767 596 9517 182177;182178;182179;182180;182181;182182;182183;182184;182185;182186;182187;182188;182189;182190;182191;182192;182193;182194;182195;182196;182197;182198;182199;182200;182201;182202;182203;182204;182205;182206;182207;182208;182209;182210;182211;182212;182213;182214;182215;182216;182217;182218;182219;182220;182221;182222;182223;182224;182225;182226 112383;112384;112385;112386;112387;112388;112389;112390;112391;112392;112393;112394;112395;112396;112397;112398;112399;112400;112401;112402;112403;112404;112405;112406;112407;112408;112409;112410;112411;112412;112413 112391 19 IIDALSPQGEVSPQANNDLLSAGMELLK Unmodified 2922.5008 0.50083801 221 P09996 yidB Uncharacterized protein YidB yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 54.902 53.583 3 1.1203E-05 19608 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 77.065 70.837 24210000 0 0 0 6727100 8886800 8596200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9768 221 9518 182227;182228;182229 112414 112414 1 IIDDAVAR Unmodified 871.47633 0.47633123 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.768 16.618 2 7.3797E-05 5756 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.34 48.281 4879000000 305720000 345650000 323670000 3268300 2865200 2390100 413420000 444020000 342890000 0 0 0 447410000 463460000 374080000 0 0 0 509950000 460970000 439230000 0 0 0 9769 86 9519 182230;182231;182232;182233;182234;182235;182236;182237;182238;182239;182240;182241;182242;182243;182244 112415;112416;112417;112418;112419;112420;112421;112422;112423;112424 112419 9 IIDFALSNCINSGIR Unmodified 1691.8665 0.86648999 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 45.839 44.287 2 4.7798E-05 21944 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.03 97.656 209810000 16022000 14667000 13869000 0 0 0 34232000 28801000 33267000 1889200 0 0 13417000 10540000 11127000 0 0 0 9265000 10734000 11984000 0 0 0 9770 283 9520 182245;182246;182247;182248;182249;182250;182251;182252;182253;182254;182255;182256;182257 112425;112426;112427;112428;112429;112430 112427 6 IIDGAELLIPMAGLINK Unmodified 1780.0168 0.016842623 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.357 53.884 2;3 2.0056E-10 26716 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 187.85 186.86 2212300000 187890000 203620000 174450000 0 0 0 178570000 141010000 166980000 0 0 0 187990000 154030000 135910000 0 0 0 251620000 230000000 200270000 0 0 0 9771 158 9521 182258;182259;182260;182261;182262;182263;182264;182265;182266;182267;182268;182269;182270;182271;182272;182273;182274;182275;182276;182277;182278;182279;182280;182281 112431;112432;112433;112434;112435;112436;112437;112438;112439;112440;112441;112442;112443;112444;112445 112433 15 IIDGAELLIPMAGLINKEDELAR Unmodified 2493.3513 0.35126064 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.782 53.349 3 1.0212E-21 26204 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 158.73 151.86 708770000 56319000 70309000 52612000 1933800 2221200 2818400 60742000 62757000 60727000 4460800 0 0 48787000 40619000 44372000 0 0 0 77240000 61927000 60923000 0 0 0 9772 158 9522 182282;182283;182284;182285;182286;182287;182288;182289;182290;182291;182292;182293;182294;182295;182296;182297 112446;112447;112448;112449;112450;112451;112452;112453;112454;112455;112456;112457 112450 11 IIDLLVGR Unmodified 897.56475 0.56475231 1970 Q46948 yajL Probable protein deglycase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.793 37.941 2 9.9959E-07 18279 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 195.98 118.24 660590000 56711000 62056000 49993000 0 365330 0 83401000 72525000 88114000 731660 869250 757600 28289000 30329000 36024000 0 0 0 50048000 48342000 51268000 0 0 770240 9773 1970 9523 182298;182299;182300;182301;182302;182303;182304;182305;182306;182307;182308;182309;182310;182311;182312;182313;182314 112458;112459;112460;112461;112462;112463;112464;112465;112466;112467;112468;112469 112463 12 IIDLSAIQDEVILVAADLTPSETAQLNLK Unmodified 3092.6857 0.68566189 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.852 54.379 3 1.375E-23 25911 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 177.1 176.9 449370000 22339000 21680000 21080000 0 0 0 24808000 22206000 29588000 0 0 0 49940000 51822000 48991000 0 0 0 50685000 61347000 44886000 0 0 0 9774 192 9524 182315;182316;182317;182318;182319;182320;182321;182322;182323;182324;182325;182326 112470;112471;112472;112473;112474;112475;112476;112477;112478;112479;112480 112479 11 IIDPLTHLVR Unmodified 1175.7026 0.70264277 160 P07363 cheA Chemotaxis protein CheA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 34.787 33.358 3 3.2417E-05 15760 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 133.13 131.81 114800000 33379000 32512000 26171000 6177400 8028700 8535200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9775 160 9525 182327;182328;182329;182330;182331;182332 112481;112482;112483;112484;112485;112486 112486 6 IIDQEVK Unmodified 843.47018 0.47018322 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 13.171 13.369 2 0.0031638 3209 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 101.21 58.493 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9776 595 9526 182333;182334;182335;182336;182337 112487;112488;112489;112490;112491 112490 5 IIDSNSR Unmodified 803.41373 0.41373097 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.706 11.515 2 0.00011623 2724 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.39 133.6 1257800000 442370000 359170000 404100000 0 0 0 7465900 0 0 0 0 0 9137900 0 7255400 0 0 0 10502000 8692000 9127500 0 0 0 9777 1305 9527 182338;182339;182340;182341;182342;182343;182344;182345;182346 112492;112493;112494 112493 3 IIDTYAEATR Unmodified 1151.5823 0.58225287 1542 P39452 nrdE Ribonucleoside-diphosphate reductase 2 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS 1 1 19.931 20.456 2 0.0020762 8001 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 78.516 32.146 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9778 1542 9528 182347;182348 112495;112496 112495 2 IIEFNQNPLYSDHSR Unmodified 1831.8853 0.88531118 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 32.486 30.984 2;3 2.2172E-35 14657 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 250.48 223.81 1801000000 285280000 282320000 229860000 8243500 8531400 5900500 65605000 66729000 74907000 10534000 10078000 6922500 76848000 73212000 77211000 0 0 0 166570000 166270000 173120000 4332800 4369200 4139400 9779 1302 9529 182349;182350;182351;182352;182353;182354;182355;182356;182357;182358;182359;182360;182361;182362;182363;182364;182365;182366;182367;182368;182369;182370;182371;182372;182373;182374;182375;182376;182377;182378;182379;182380;182381;182382;182383;182384 112497;112498;112499;112500;112501;112502;112503;112504;112505;112506;112507;112508;112509;112510;112511;112512;112513;112514;112515;112516;112517 112510 19 IIEFVEKPANPPSMPNDPSK Unmodified 2209.1089 0.10890511 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.431 31.091 3 1.8761E-10 14945 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 106.13 100.02 377040000 26549000 29955000 26784000 0 0 0 49408000 54176000 46697000 0 0 0 26356000 25726000 27613000 0 0 0 21406000 21948000 20421000 0 0 0 9780 283 9530 182385;182386;182387;182388;182389;182390;182391;182392;182393;182394;182395;182396 112518;112519;112520;112521;112522;112523;112524;112525;112526 112519 9 IIEIGAVEVVNR Unmodified 1310.7558 0.75580056 79 P03007 dnaQ DNA polymerase III subunit epsilon yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.548 36.85 2 0.05923 17952 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 45.598 35.892 48039000 2517300 0 4046200 0 0 0 3782200 4142400 4829100 0 0 0 3685300 3267900 2921700 0 0 0 6339900 5816700 6690400 0 0 0 9781 79 9531 182397;182398;182399;182400;182401;182402;182403;182404;182405;182406;182407 112527 112527 0 IIEINPEEGWVR Unmodified 1453.7565 0.75652884 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.926 40.782 2 6.933E-05 14422 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 102.61 94.963 24865000 0 0 0 4404500 6024700 4070100 0 0 0 2384300 2653900 2139200 0 0 0 0 0 0 0 0 0 1551400 1636700 0 9782 1937 9532 182408;182409;182410;182411;182412;182413;182414;182415 112528;112529;112530;112531 112530 2 IIEPAVNPALIGAVK Unmodified 1503.9025 0.90246479 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 43.282 41.674 2;3 8.989E-06 20609 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.83 114.83 1162200000 11154000 9819400 9850500 873040 490740 0 172140000 200070000 165950000 11937000 13102000 12022000 110170000 105580000 101380000 4546600 3269900 2910000 71510000 75472000 66648000 4625200 3321700 5364500 9783 506 9533 182416;182417;182418;182419;182420;182421;182422;182423;182424;182425;182426;182427;182428;182429;182430;182431;182432;182433;182434;182435;182436;182437;182438;182439;182440;182441;182442;182443;182444;182445;182446;182447;182448;182449;182450 112532;112533;112534;112535;112536;112537;112538;112539;112540;112541;112542;112543;112544;112545;112546;112547;112548;112549;112550;112551 112541 19 IIEQHINEPEK Unmodified 1348.6987 0.69867961 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 12.627 13.503 2;3 2.4598E-07 4082 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187.97 127 1324500000 304820000 289700000 311830000 4964500 4149600 3941500 58423000 62006000 46818000 0 0 0 39216000 29893000 36054000 0 0 0 45212000 47208000 40300000 0 0 0 9784 404 9534 182451;182452;182453;182454;182455;182456;182457;182458;182459;182460;182461;182462;182463;182464;182465;182466;182467;182468;182469;182470;182471;182472;182473;182474;182475;182476;182477;182478 112552;112553;112554;112555;112556;112557;112558 112554 7 IIEVQGTAEGEPFTHEELLILLALAR Unmodified 2861.5539 0.55385986 1049 P0CG19 rph Inactive ribonuclease PH yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 55.267 53.752 3 3.0075E-22 21603 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 162.86 159.81 22292000 0 0 0 0 0 0 0 0 0 8733800 0 7596000 0 0 0 0 0 0 0 0 0 5961900 0 0 9785 1049 9535 182479;182480;182481 112559 112559 1 IIFAGTPDFAAR Unmodified 1277.6768 0.67682195 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.769 39.104 2 2.6753E-08 19339 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.33 157.46 1183800000 107870000 95263000 93265000 0 0 0 103450000 101150000 111150000 0 0 0 91570000 76026000 89070000 0 0 0 104340000 105920000 104740000 0 0 0 9786 1224 9536 182482;182483;182484;182485;182486;182487;182488;182489;182490;182491;182492;182493 112560;112561;112562;112563;112564;112565;112566;112567;112568;112569;112570;112571 112562 12 IIFSLER Unmodified 876.5069 0.50690308 1804 P76010 ycgR Flagellar brake protein YcgR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 34.721 33.292 2 0.015892 11497 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 81.297 71.547 86292000 27853000 27072000 24868000 1891900 2295400 2312000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9787 1804 9537 182494;182495;182496;182497;182498;182499 112572;112573;112574 112574 3 IIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMR Unmodified 4196.9605 0.96054967 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.62 48.234 4 4.4617E-38 23717 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 199.86 199.83 297320000 61918000 54873000 45172000 0 0 0 7901100 12739000 10272000 0 0 0 14552000 15998000 15015000 0 0 0 21347000 16661000 20869000 0 0 0 9788 1455 9538 182500;182501;182502;182503;182504;182505;182506;182507;182508;182509;182510;182511 112575;112576;112577;112578;112579 112577 5 IIGEQLGVK Unmodified 955.57023 0.57023162 226 P0A6A8 acpP Acyl carrier protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 2 2 2 4 4 4 2 2 2 4 5 3 1 1 1 5 5 5 2 2 2 24.989 24.04 1;2 0.00019373 9769 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.12 62.314 80695000000 6159600000 6451000000 6149500000 32939000 31597000 38523000 6599600000 6728700000 6386800000 125970000 107940000 101950000 7925100000 6425200000 5755600000 2719300 2348300 2167300 6575000000 7366800000 7412200000 121700000 111480000 80501000 9789 226 9539 182512;182513;182514;182515;182516;182517;182518;182519;182520;182521;182522;182523;182524;182525;182526;182527;182528;182529;182530;182531;182532;182533;182534;182535;182536;182537;182538;182539;182540;182541;182542;182543;182544;182545;182546;182547;182548;182549;182550;182551;182552;182553;182554;182555;182556;182557;182558;182559;182560;182561;182562;182563;182564;182565;182566;182567;182568;182569;182570;182571;182572;182573;182574;182575;182576;182577;182578;182579;182580;182581 112580;112581;112582;112583;112584;112585;112586;112587;112588;112589;112590;112591;112592;112593;112594;112595;112596;112597;112598;112599;112600;112601;112602;112603;112604;112605;112606;112607;112608;112609;112610;112611;112612;112613;112614;112615;112616;112617;112618;112619;112620;112621;112622;112623;112624;112625;112626;112627;112628;112629;112630;112631;112632;112633 112609 51 IIGGGMPVGAFGGR Unmodified 1287.6758 0.6757761 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.466 34.929 2 6.2878E-08 17236 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.75 121.48 2371100000 171340000 181350000 174160000 3399100 0 0 157010000 149920000 151350000 29106000 28035000 26573000 197080000 181050000 171610000 12706000 7886500 7413500 230200000 229570000 221860000 13141000 13248000 13069000 9790 1227 9540 182582;182583;182584;182585;182586;182587;182588;182589;182590;182591;182592;182593;182594;182595;182596;182597;182598;182599;182600;182601;182602;182603 112634;112635;112636;112637;112638;112639;112640;112641;112642;112643;112644;112645;112646;112647;112648;112649;112650;112651;112652;112653;112654 112640 21 IIGIDLGTTNSCVAIMDGTTPR Unmodified 2304.1454 0.14536697 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 50.327 49.095 2;3 4.4049E-35 19600 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 283.07 271.82 5609800000 392390000 282120000 216380000 13929000 37713000 15337000 440600000 444920000 406730000 251630000 219610000 225510000 374250000 374890000 349920000 12570000 12499000 10796000 465360000 444720000 459620000 53258000 50085000 54991000 9791 293 9541 182604;182605;182606;182607;182608;182609;182610;182611;182612;182613;182614;182615;182616;182617;182618;182619;182620;182621;182622;182623;182624;182625;182626;182627;182628;182629;182630;182631;182632;182633;182634;182635;182636;182637;182638;182639;182640;182641;182642;182643;182644;182645;182646;182647;182648;182649 112655;112656;112657;112658;112659;112660;112661;112662;112663;112664;112665;112666;112667;112668;112669;112670;112671;112672;112673;112674;112675;112676;112677;112678;112679;112680;112681;112682;112683;112684;112685;112686;112687;112688;112689;112690;112691;112692;112693;112694;112695 112659 41 IIGIHGGDPLMTK Unmodified 1350.733 0.73295662 1860 P76423 thiM Hydroxyethylthiazole kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 2 2 2 2 27.621 26.44 2;3 0.029932 11986 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 31.071 23.616 205050000 0 0 0 0 0 0 18104000 20424000 19267000 0 0 0 18655000 15925000 17266000 0 0 0 34846000 26822000 33738000 0 0 0 9792 1860 9542 182650;182651;182652;182653;182654;182655;182656;182657;182658;182659;182660;182661;182662 112696;112697 112696 1 IIGLATFNR Unmodified 1003.5815 0.581465 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 35.363 33.852 2 3.6592E-05 16240 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.47 80.237 97397000 1637800 0 0 0 0 0 12129000 10505000 0 0 0 0 11176000 12663000 10140000 0 0 0 12099000 15699000 11349000 0 0 0 9793 193 9543 182663;182664;182665;182666;182667;182668;182669;182670;182671 112698;112699;112700;112701;112702;112703 112698 6 IIGSGVGGITETDATLAAASNAILVGFNVR Unmodified 2886.5451 0.54508608 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.54 54.282 3 6.2368E-42 21065 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 216.87 210.57 573940000 59738000 41575000 46468000 10725000 8585000 6502700 22582000 24029000 21009000 20646000 19725000 24188000 29958000 30990000 27474000 21642000 25265000 36079000 28244000 27468000 25824000 6976200 8252200 0 9794 297 9544 182672;182673;182674;182675;182676;182677;182678;182679;182680;182681;182682;182683;182684;182685;182686;182687;182688;182689;182690;182691;182692;182693;182694 112704;112705;112706;112707;112708;112709;112710;112711;112712 112705 9 IIGTGSYLPEQVR Unmodified 1431.7722 0.7721789 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.322 31.68 2 4.093E-05 15054 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 120.06 80.757 4029000000 334810000 275000000 271480000 1841700 2211500 2100400 278220000 270940000 269170000 1886700 1928400 1515800 354510000 361760000 320600000 0 0 0 396740000 433100000 448880000 0 0 2256200 9795 273 9545 182695;182696;182697;182698;182699;182700;182701;182702;182703;182704;182705;182706;182707;182708;182709;182710;182711;182712;182713 112713;112714;112715;112716;112717;112718 112716 6 IIHLEGSPLTR Unmodified 1234.7034 0.70337105 1357 P31064 yedE UPF0394 inner membrane protein YedE yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 2 1 2 2 2 1 1 1 2 2 2 24.85 23.931 2;3 5.7175E-05 10755 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.477 90.961 250240000 9859500 13283000 13772000 1523300 0 0 23251000 24030000 20007000 0 0 3141400 24551000 17556000 25074000 646810 791690 583730 20748000 28875000 22550000 0 0 0 9796 1357 9546 182714;182715;182716;182717;182718;182719;182720;182721;182722;182723;182724;182725;182726;182727;182728;182729;182730;182731;182732;182733;182734;182735;182736;182737;182738;182739;182740 112719;112720;112721;112722;112723;112724 112721 6 IIHLTDDSFDTDVLK Unmodified 1730.8727 0.87268081 571 P0AA25 trxA Thioredoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 1 1 1 40.074 38.391 2;3 4.5086E-15 17809 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 229.29 219.64 23484000000 2699200000 2513800000 2443600000 11811000 15563000 12607000 1831200000 1770400000 1994200000 26726000 16641000 18986000 1434600000 1447300000 1401200000 6832300 6138800 1547500 1931600000 1970100000 1904600000 7884500 7679800 9851900 9797 571 9547 182741;182742;182743;182744;182745;182746;182747;182748;182749;182750;182751;182752;182753;182754;182755;182756;182757;182758;182759;182760;182761;182762;182763;182764;182765;182766;182767;182768;182769;182770;182771;182772;182773;182774;182775;182776;182777;182778;182779;182780 112725;112726;112727;112728;112729;112730;112731;112732;112733;112734;112735;112736;112737;112738;112739;112740;112741;112742;112743;112744;112745;112746;112747;112748;112749;112750;112751;112752;112753;112754;112755;112756;112757;112758;112759;112760 112760 36 IIHPMGEIDAMEFLINK Unmodified 1970.0005 0.000540632 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 1 1 51.267 49.928 2;3 1.7141E-10 24369 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 158.25 151.82 952090000 180030000 136030000 125630000 8058500 9922400 8336000 55610000 39281000 38229000 52609000 52722000 37900000 38194000 28860000 0 0 0 0 47096000 46754000 41938000 2510000 0 2387100 9798 982 9548 182781;182782;182783;182784;182785;182786;182787;182788;182789;182790;182791;182792;182793;182794;182795;182796;182797;182798;182799;182800;182801;182802;182803;182804;182805;182806;182807 112761;112762;112763;112764;112765;112766;112767;112768;112769;112770;112771;112772;112773;112774;112775;112776;112777;112778;112779;112780;112781 112777 19 IIHTQGYPMCPDDEVWVADAEGNPLPQGEVGR Unmodified 3549.6293 0.62930277 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 45.071 43.687 3 2.6363E-13 21112 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 118.01 117.55 115250000 8071600 5885900 7841500 0 0 0 7006300 0 3184600 0 0 0 8428900 9697800 9770700 0 0 0 22652000 16887000 15826000 0 0 0 9799 1055 9549 182808;182809;182810;182811;182812;182813;182814;182815;182816;182817;182818 112782;112783 112783 2 IIIAIDAGHGGQDPGAIGPGGTR Unmodified 2142.1182 0.11816466 1280 P26365 amiB N-acetylmuramoyl-L-alanine amidase AmiB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.881 31.441 3 0.00022447 14922 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 68.552 66.329 127040000 13931000 9917900 10085000 0 0 0 14388000 9919000 13002000 0 0 0 9393500 7542600 4893800 0 0 0 12125000 11098000 10741000 0 0 0 9800 1280 9550 182819;182820;182821;182822;182823;182824;182825;182826;182827;182828;182829;182830 112784 112784 1 IIIDDAAEVAR Unmodified 1184.6401 0.6401021 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.149 28.581 2 2.8908E-07 12848 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 159.58 150.19 1153900000 97373000 89230000 80483000 882780 0 1084900 123800000 121450000 130500000 1213900 1689600 1634600 81738000 81701000 74835000 0 0 0 94389000 87134000 81196000 1233700 1040100 1257700 9801 801 9551 182831;182832;182833;182834;182835;182836;182837;182838;182839;182840;182841;182842;182843;182844;182845;182846;182847;182848;182849;182850 112785;112786;112787;112788;112789;112790;112791 112789 7 IIISEEQGSNSHSR Unmodified 1555.759 0.75904803 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.737 13.437 3 0.06656 4016 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 34.851 33.781 98201000 12703000 12343000 11710000 0 3505900 0 9733700 8516900 7351500 4381800 3594200 6663300 4498900 4627300 4951400 0 0 0 0 3621200 0 0 0 0 9802 326 9552 182851;182852;182853;182854;182855;182856;182857;182858;182859;182860;182861;182862;182863;182864 112792;112793 112792 2 IIISELEK Unmodified 943.559 0.55899823 1560 P42641 obgE GTPase ObgE/CgtA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 28.348 27.331 2 0.0064759 12525 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.916 84.916 59539000 18392000 17610000 15665000 0 0 0 0 0 0 0 0 0 7872400 0 0 0 0 0 0 0 0 0 0 0 9803 1560 9553 182865;182866;182867;182868 112794;112795 112794 2 IILAVGQHAR Unmodified 1076.6455 0.64546224 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 2 2 1 1 2 2 2 2 2 2 1 16.874 17.528 2;3 0.00012563 5825 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 155.51 151.15 718850000 0 0 0 0 0 0 47433000 203750000 186200000 1038600 1162800 0 67561000 71302000 59866000 0 0 0 27343000 28455000 24121000 610130 0 0 9804 1861 9554 182869;182870;182871;182872;182873;182874;182875;182876;182877;182878;182879;182880;182881;182882;182883;182884;182885;182886;182887;182888 112796;112797;112798;112799;112800;112801;112802;112803;112804;112805;112806 112805 10 IILCTGDMGFGACK Oxidation (M) 1557.699 0.69895566 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 33.341 31.781 2 8.3673E-05 15575 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.056 87.28 39807000 0 0 3512400 620710 1110100 584130 5868500 0 13137000 0 0 0 9922500 0 0 0 0 0 0 5051500 0 0 0 0 9805 441 9555 182889;182890;182891;182892;182893;182894;182895;182896 112807 112807 213 1 IILCTGDMGFGACK Unmodified 1541.704 0.70404104 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 39.56 37.844 2;3 4.605E-11 18390 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 170.72 164.74 4873400000 316880000 307450000 268940000 1410400 1625700 1645000 438220000 410170000 415360000 0 0 1419600 417380000 456840000 443610000 0 0 0 437730000 498870000 454570000 1255800 0 0 9806 441 9555 182897;182898;182899;182900;182901;182902;182903;182904;182905;182906;182907;182908;182909;182910;182911;182912;182913;182914;182915;182916;182917;182918;182919;182920;182921;182922;182923;182924;182925 112808;112809;112810;112811;112812;112813;112814;112815;112816;112817;112818;112819;112820 112812 13 IILDMVFNHTSTQHAWFR Unmodified 2215.0997 0.099677825 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 3 2 2 2 2 2 1 45.522 44.035 3;4 1.1544E-30 20577 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 195.15 191.2 2869500000 0 0 0 0 0 1395200 273930000 290940000 302600000 0 0 0 312760000 275460000 287390000 0 0 0 381150000 399270000 342150000 2483400 0 0 9807 1324 9556 182926;182927;182928;182929;182930;182931;182932;182933;182934;182935;182936;182937;182938;182939;182940;182941;182942;182943;182944;182945;182946 112821;112822;112823;112824;112825;112826;112827;112828;112829;112830;112831;112832;112833;112834;112835;112836;112837;112838;112839 112833 18 IILDSIK Unmodified 800.50076 0.50075507 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 27.66 26.501 2 0.0053367 11982 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.07 30.634 128070000 17972000 16750000 17453000 0 0 367000 8434900 8192300 7870500 0 0 0 5557500 5292400 6102800 0 0 0 12822000 10128000 11129000 0 0 0 9808 1664 9557 182947;182948;182949;182950;182951;182952;182953;182954;182955;182956;182957;182958;182959 112840;112841;112842;112843;112844;112845;112846;112847;112848 112844 9 IILGGDHLGPNCWQQENADAAMEK Unmodified 2666.2217 0.22171981 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 36.097 34.548 2;3 7.9932E-60 16870 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 286.28 281.81 12547000000 1023000000 1047400000 846980000 18815000 18798000 24286000 1345300000 1297200000 1203200000 67273000 75585000 75312000 990930000 1002200000 927310000 17757000 14316000 17733000 694740000 867760000 885150000 30151000 26130000 29422000 9809 1046 9558 182960;182961;182962;182963;182964;182965;182966;182967;182968;182969;182970;182971;182972;182973;182974;182975;182976;182977;182978;182979;182980;182981;182982;182983;182984;182985;182986;182987;182988;182989;182990;182991;182992;182993;182994;182995 112849;112850;112851;112852;112853;112854;112855;112856;112857;112858;112859;112860;112861;112862;112863;112864;112865;112866;112867;112868;112869;112870;112871;112872;112873;112874;112875;112876;112877;112878;112879;112880;112881;112882;112883;112884;112885 112858 37 IILGGDHLGPNCWQQENADAAMEK Oxidation (M) 2682.2166 0.21663443 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 33.543 32.058 3 6.6175E-07 15324 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.16 105.15 407380000 35234000 31323000 26524000 1226100 0 0 56482000 56466000 53099000 0 0 0 25735000 25310000 22391000 0 0 0 22370000 23798000 24588000 1555400 1277300 0 9810 1046 9558 182996;182997;182998;182999;183000;183001;183002;183003;183004;183005;183006;183007;183008;183009;183010;183011;183012;183013;183014;183015;183016;183017;183018;183019;183020;183021;183022 112886;112887;112888;112889;112890;112891;112892;112893;112894;112895;112896;112897;112898;112899;112900;112901;112902 112890 468 17 IILLGAPGAGK Unmodified 1008.6332 0.63316622 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 3 2 2 1 1 1 32.574 31.196 1;2 0.00019164 14233 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 105.57 70.76 14795000000 1148600000 959620000 790280000 7304400 5396900 5167500 1340400000 1202800000 1195800000 2428500 2513800 2209400 1170700000 1134800000 1075200000 3847500 2841700 2592700 1576600000 1507200000 1649100000 3456700 2870400 3187600 9811 1733 9559 183023;183024;183025;183026;183027;183028;183029;183030;183031;183032;183033;183034;183035;183036;183037;183038;183039;183040;183041;183042;183043;183044;183045;183046;183047;183048;183049;183050;183051;183052;183053;183054;183055;183056;183057;183058;183059 112903;112904;112905;112906;112907;112908;112909;112910;112911;112912;112913;112914;112915;112916;112917;112918;112919;112920;112921;112922;112923;112924;112925;112926;112927;112928;112929;112930;112931 112931 23 IILMQAANTGLTEGSTPNGNDYDRDVVIISTLR Unmodified 3546.7988 0.79881094 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.175 49.789 3 6.9361E-56 19911 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 244.62 234.46 45161000 0 0 0 1340800 1110800 1463600 0 0 0 13405000 9526400 15825000 0 0 0 0 0 0 0 0 0 0 0 2489700 9812 122 9560 183060;183061;183062;183063;183064;183065;183066 112932;112933;112934 112934 3 IILPVNDGR Unmodified 995.57638 0.57637963 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.187 26.802 2 0.00031699 12579 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 116.37 70.001 112170000 9167600 9151300 9401600 1973600 1119100 1531400 10299000 9271700 9034900 2857900 2927100 2500000 7182600 4069800 2920400 0 0 0 8291600 10054000 7072800 1296500 2047800 0 9813 1115 9561 183067;183068;183069;183070;183071;183072;183073;183074;183075;183076;183077;183078;183079;183080;183081;183082;183083;183084;183085;183086 112935;112936;112937;112938;112939;112940;112941;112942;112943 112935 9 IILSDDK Unmodified 802.44363 0.44363412 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.808 16.623 2 0.00097355 5740 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 139.92 86.207 3263900000 367510000 356240000 325640000 0 0 0 180200000 188110000 149110000 0 0 0 184860000 172220000 167050000 0 0 0 436490000 384800000 351690000 0 0 0 9814 392 9562 183087;183088;183089;183090;183091;183092;183093;183094;183095;183096;183097;183098 112944;112945;112946;112947;112948;112949;112950;112951;112952;112953 112945 10 IILSDDKVK Unmodified 1029.607 0.60701105 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.913 15.549 2 0.0018381 5166 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 94.114 76.75 2412400000 232310000 228200000 212490000 2401200 2430600 1506800 68382000 83885000 97660000 2422700 0 0 147240000 116350000 131830000 1559400 0 0 332080000 395190000 346160000 2735300 3775100 3747100 9815 392 9563 183099;183100;183101;183102;183103;183104;183105;183106;183107;183108;183109;183110;183111;183112;183113;183114;183115;183116;183117;183118 112954;112955;112956;112957;112958;112959;112960;112961 112954 8 IILVTGASDGIGR Unmodified 1270.7245 0.72450043 1382 P31808 yciK Uncharacterized oxidoreductase YciK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.98 32.506 2 1.4767E-06 15425 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.89 135.36 407300000 55689000 54231000 53021000 760090 815840 0 33788000 29076000 34865000 0 0 0 25025000 28464000 28440000 0 0 0 29783000 2731800 30613000 0 0 0 9816 1382 9564 183119;183120;183121;183122;183123;183124;183125;183126;183127;183128;183129;183130;183131;183132 112962;112963;112964;112965;112966;112967;112968;112969 112966 6 IILVTGYR Unmodified 933.56475 0.56475231 1954 Q46810 mocA Molybdenum cofactor cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.644 29.082 2 0.0009869 14052 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.72 107.9 118650000 6741400 5745400 5144300 0 0 0 18552000 18608000 14683000 3968700 3688800 4084900 6842400 4992000 5692600 0 0 0 7030200 7459300 5422300 0 0 0 9817 1954 9565 183133;183134;183135;183136;183137;183138;183139;183140;183141;183142;183143;183144;183145;183146;183147 112970;112971;112972 112970 3 IIMEYLDER Unmodified 1180.5798 0.57981002 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 35.805 34.685 2 6.314E-05 16564 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.63 142.06 3494200000 296210000 302750000 280180000 0 0 0 187810000 0 0 0 0 0 327750000 323800000 292640000 247200000 162710000 147600000 265200000 325320000 335020000 0 0 0 9818 712 9566 183148;183149;183150;183151;183152;183153;183154;183155;183156;183157;183158;183159;183160 112973;112974;112975;112976;112977;112978;112979;112980;112981;112982;112983 112981 11 IIMEYLDERFPHPPLMPVYPVAR Unmodified 2782.4339 0.43388484 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 50.036 49.897 3;4 1.9635E-15 19163 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 149.85 146.87 866810000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 320190000 289810000 254370000 0 0 0 0 0 2439400 9819 712 9567 183161;183162;183163;183164;183165;183166;183167 112984;112985;112986;112987;112988;112989 112985 6 IIMLIPTGTSVGLTSVSLGVIR Unmodified 2226.3021 0.30212561 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 55.212 53.723 2;3 5.9753E-53 25393 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 201.67 201.67 3299600000 207260000 198720000 183980000 0 0 0 270280000 269030000 301630000 39341000 33094000 28966000 331830000 324690000 333370000 0 0 0 292320000 239510000 245530000 0 0 0 9820 539 9568 183168;183169;183170;183171;183172;183173;183174;183175;183176;183177;183178;183179;183180;183181;183182;183183;183184;183185;183186;183187;183188;183189;183190;183191;183192;183193;183194;183195;183196;183197 112990;112991;112992;112993;112994;112995;112996;112997;112998;112999;113000;113001;113002;113003;113004;113005;113006;113007;113008;113009;113010;113011;113012;113013;113014;113015;113016;113017 113016 27 IINEISPAANTALEGLYQSGDALCTQCEAEGFR Unmodified 3597.6716 0.67156152 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 1 1 1 2 2 53.425 51.986 3;4 1.6272E-33 25853 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 188.47 187.09 1117300000 167420000 165790000 142430000 0 0 0 58932000 103170000 58322000 0 0 0 47636000 58005000 42062000 0 0 0 59610000 119040000 94876000 0 0 0 9821 94 9569 183198;183199;183200;183201;183202;183203;183204;183205;183206;183207;183208;183209;183210;183211;183212;183213;183214;183215 113018;113019;113020;113021;113022;113023;113024;113025;113026;113027;113028;113029;113030;113031;113032;113033;113034 113018 17 IINELEGIFEGAGWNVIK Unmodified 2001.0571 0.057127534 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 3 2 2 2 2 3 2 2 3 2 2 2 2 3 4 4 4 3 55.369 54.072 2;3 3.3888E-55 19778 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 278.27 272.43 47818000000 973680000 967550000 915260000 6695000000 6009800000 5949500000 940150000 919500000 866420000 602010000 623400000 540200000 698690000 765230000 726270000 167860000 225220000 183040000 995080000 1239100000 1177400000 4968100000 5412700000 5256400000 9822 939 9570 183216;183217;183218;183219;183220;183221;183222;183223;183224;183225;183226;183227;183228;183229;183230;183231;183232;183233;183234;183235;183236;183237;183238;183239;183240;183241;183242;183243;183244;183245;183246;183247;183248;183249;183250;183251;183252;183253;183254;183255;183256;183257;183258;183259;183260;183261;183262;183263;183264;183265;183266;183267;183268;183269;183270;183271;183272;183273;183274;183275;183276;183277 113035;113036;113037;113038;113039;113040;113041;113042;113043;113044;113045;113046;113047;113048;113049;113050;113051;113052;113053;113054;113055;113056;113057;113058;113059;113060;113061;113062;113063;113064;113065;113066;113067;113068;113069;113070;113071;113072;113073 113061 39 IINEPTAAALAYGLDK Unmodified 1658.8879 0.88793694 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 2 3 3 2 2 1 2 2 2 2 2 2 2 2 2 42.278 40.611 2;3 5.362E-10 15967 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 141.38 132.06 14290000000 1290400000 1097200000 1019600000 68352000 72712000 64405000 1292900000 1197100000 1177600000 348890000 352190000 364390000 800300000 778690000 625560000 42310000 44201000 24192000 1063500000 1079800000 1152900000 117210000 104980000 110550000 9823 293 9571 183278;183279;183280;183281;183282;183283;183284;183285;183286;183287;183288;183289;183290;183291;183292;183293;183294;183295;183296;183297;183298;183299;183300;183301;183302;183303;183304;183305;183306;183307;183308;183309;183310;183311;183312;183313;183314;183315;183316;183317;183318;183319;183320;183321;183322;183323;183324;183325;183326;183327 113074;113075;113076;113077;113078;113079;113080;113081;113082;113083;113084;113085;113086;113087;113088;113089;113090;113091;113092;113093;113094;113095;113096;113097;113098;113099;113100;113101;113102;113103;113104;113105;113106;113107 113090 31 IINEPTAAALAYGLDKGTGNR Unmodified 2144.1226 0.12258134 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 37.055 35.16 3 4.7681E-11 14224 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 106.03 104.52 72277000 0 0 0 8445400 9211200 9529800 0 0 0 9482600 8450400 7444800 0 0 0 2976200 0 0 0 0 0 5644600 5300400 5791200 9824 293 9572 183328;183329;183330;183331;183332;183333;183334;183335;183336;183337 113108;113109;113110;113111;113112;113113;113114;113115;113116 113109 9 IINEVNGISR Unmodified 1113.6142 0.6142217 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.174 20.422 2 0.00011193 7748 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 129.38 103.82 1086800000 70006000 74711000 75167000 2306800 1514900 1638800 77107000 79240000 80793000 1432300 1497000 1563300 104320000 88301000 78159000 0 0 0 113300000 109750000 122890000 1789000 1345900 0 9825 86 9573 183338;183339;183340;183341;183342;183343;183344;183345;183346;183347;183348;183349;183350;183351;183352;183353;183354;183355;183356;183357 113117;113118;113119;113120;113121;113122;113123 113121 6 IINGEVPEGLK Unmodified 1167.6499 0.6499385 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.646 24.488 2 0.0001445 11253 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.61 67.799 632520000 74096000 64212000 62989000 2057500 2129900 2002200 72036000 67428000 72897000 5042100 5792200 5882500 30237000 26719000 27543000 0 887870 0 40843000 34298000 34277000 1156100 0 0 9826 1662 9574 183358;183359;183360;183361;183362;183363;183364;183365;183366;183367;183368;183369;183370;183371;183372;183373;183374;183375;183376;183377 113124;113125;113126;113127;113128;113129;113130;113131;113132;113133;113134;113135;113136;113137;113138;113139;113140 113127 15 IINIHHSFLPAFIGAR Unmodified 1805.0101 0.010058182 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 38.763 37.089 3;4 4.4243E-09 18409 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 130.24 130.24 1291900000 241600000 171160000 215000000 0 0 0 60797000 61626000 66428000 0 0 0 63370000 56250000 58940000 0 0 0 106970000 95800000 93924000 0 0 0 9827 1455 9575 183378;183379;183380;183381;183382;183383;183384;183385;183386;183387;183388;183389;183390;183391;183392;183393;183394;183395;183396;183397;183398;183399;183400;183401 113141;113142;113143;113144;113145;113146;113147;113148;113149;113150;113151;113152;113153;113154;113155 113142 15 IINITSVHEHTPLPDASAYTAAK Unmodified 2448.2649 0.26488848 1422 P33368 yohF Uncharacterized oxidoreductase YohF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 31.444 30.305 3 5.0999E-08 14263 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.58 108.66 66180000 21869000 23550000 20762000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9828 1422 9576 183402;183403;183404 113156;113157;113158 113156 3 IINNGVPESSFTLSIVPNDQVDQPDSQVVGHCANDTHK Unmodified 4130.9603 0.96034997 1827 P76172 ynfD Uncharacterized protein YnfD yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 41.227 39.52 4 7.2217E-13 19381 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.24 104.9 245540000 40062000 37597000 31739000 0 0 0 25825000 29225000 31406000 0 0 0 0 0 6324500 0 0 0 14281000 15356000 13726000 0 0 0 9829 1827 9577 183405;183406;183407;183408;183409;183410;183411;183412;183413;183414 113159;113160;113161;113162;113163 113162 5 IIPCLDVR Unmodified 984.54264 0.54263666 1627 P60664 hisF Imidazole glycerol phosphate synthase subunit HisF yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.021 30.681 2 0.013854 14871 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 72.789 52.09 136250000 17594000 12033000 13308000 0 0 0 15647000 11673000 11604000 0 0 0 9282100 8440600 9011000 0 0 0 9104900 8320300 10232000 0 0 0 9830 1627 9578 183415;183416;183417;183418;183419;183420;183421;183422;183423;183424;183425;183426 113164 113164 1 IIPHLIR Unmodified 860.55961 0.55960735 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.47 20.633 2 0.0016613 6164 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 126.05 67.385 560870000 28321000 27322000 24064000 4056300 4500000 3836200 28627000 28057000 27974000 43564000 34048000 28383000 21007000 21010000 25557000 26272000 7908100 8513100 31730000 23711000 32750000 28219000 27436000 24008000 9831 1057 9579 183427;183428;183429;183430;183431;183432;183433;183434;183435;183436;183437;183438;183439;183440;183441;183442;183443;183444;183445;183446;183447;183448;183449;183450 113165;113166;113167;113168;113169;113170;113171;113172;113173;113174 113165 9 IIPLCPFAK Unmodified 1057.5994 0.59942325 1517 P39274 yjdJ Uncharacterized protein YjdJ yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 1 1 1 1 1 1 39.981 38.141 2 0.0037536 18393 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 80.462 55.644 167190000 0 0 0 0 0 0 76664000 914900 0 976590 0 0 16175000 14635000 11010000 0 0 0 17539000 12707000 16564000 0 0 0 9832 1517 9580 183451;183452;183453;183454;183455;183456;183457;183458;183459;183460;183461 113175;113176;113177;113178;113179;113180 113177 6 IIPQDELGSSEK Unmodified 1314.6667 0.66671078 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 21.043 21.485 2 3.9212E-08 8356 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.79 149.42 222840000 39224000 32861000 29837000 0 0 0 0 0 17099000 0 0 0 20457000 16575000 18800000 0 0 0 25457000 22531000 0 0 0 0 9833 1085 9581 183462;183463;183464;183465;183466;183467;183468;183469;183470 113181;113182;113183;113184;113185;113186;113187;113188;113189;113190 113187 10 IIPVTAFSQNCSLIWCEQTR Unmodified 2422.1773 0.1773358 1783 P75849 ycbL Uncharacterized protein YcbL yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 51.553 50.293 3 0.0026749 24834 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 55.383 47.095 175140000 0 0 0 1257400 0 1787700 21773000 17837000 16297000 0 0 0 19659000 15393000 16565000 0 0 0 20551000 23892000 20131000 0 0 0 9834 1783 9582 183471;183472;183473;183474;183475;183476;183477;183478;183479;183480;183481 113191;113192;113193;113194 113192 2 IIQFGEGNFLR Unmodified 1292.6877 0.68772099 260 P0A6L7 uxaB Altronate oxidoreductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 42.15 40.638 2 6.026E-06 18969 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 151.44 132.35 45252000 6869200 7383600 4912200 0 0 0 0 0 0 0 0 0 13763000 0 12325000 0 0 0 0 0 0 0 0 0 9835 260 9583 183482;183483;183484;183485;183486 113195;113196 113196 2 IIQICGGLSDR Unmodified 1230.6391 0.63905624 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.666 28.358 2 1.6057E-07 9191 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 168.83 116.97 513880000 23667000 21579000 21394000 3369200 3044300 3742200 32468000 30526000 26890000 5363900 5257900 6626100 31901000 30830000 27582000 24148000 16453000 19387000 35907000 36119000 34659000 23525000 24179000 25259000 9836 1633 9584 183487;183488;183489;183490;183491;183492;183493;183494;183495;183496;183497;183498;183499;183500;183501;183502;183503;183504;183505;183506;183507;183508;183509;183510 113197;113198;113199;113200;113201;113202;113203;113204;113205;113206;113207;113208;113209;113210;113211;113212;113213;113214;113215;113216;113217 113198 19 IIQICGGLSDREMEAQVLDSMDLER Unmodified 2877.3671 0.36706342 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 50.703 50.235 3 1.1849E-30 18488 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 190.88 190.02 49530000 0 0 0 0 0 2084100 0 0 0 0 0 0 0 0 0 16300000 8510100 13209000 0 0 0 0 0 9426700 9837 1633 9585 183511;183512;183513;183514;183515 113218;113219;113220;113221 113219 4 IIQICGGLSDREMEAQVLDSMDLERER Unmodified 3162.5108 0.51076754 1633 P60785 lepA Elongation factor 4 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 46.802 46.257 4 2.2195E-07 16561 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 96.54 93.908 35853000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7068800 7609600 6351900 0 0 0 0 7927700 6894900 9838 1633 9586 183516;183517;183518;183519;183520 113222;113223;113224;113225 113223 4 IIQIDINPASIGAHSK Unmodified 1675.9257 0.92571943 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 36.456 34.715 2;3 4.3861E-10 16579 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.99 170.67 1116000000 141340000 152790000 120400000 24529000 26231000 19657000 153760000 142840000 155940000 13601000 11517000 12182000 20253000 19258000 20820000 0 0 0 23639000 26054000 31198000 0 0 0 9839 147 9587 183521;183522;183523;183524;183525;183526;183527;183528;183529;183530;183531;183532;183533;183534;183535;183536;183537;183538;183539;183540;183541;183542;183543;183544;183545;183546;183547;183548;183549;183550;183551;183552;183553;183554;183555 113226;113227;113228;113229;113230;113231;113232;113233;113234;113235;113236;113237;113238;113239;113240;113241;113242;113243;113244;113245 113240 20 IIQINSK Unmodified 814.49125 0.49125301 116 P05707 srlD Sorbitol-6-phosphate 2-dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.645 15.47 2 0.0020276 4868 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 119.56 63.047 330290000 21646000 17850000 15015000 2221700 1804900 1874500 0 57607000 57028000 0 0 0 26092000 26644000 25692000 0 0 0 26559000 27376000 22880000 0 0 0 9840 116 9588 183556;183557;183558;183559;183560;183561;183562;183563;183564;183565;183566;183567;183568;183569 113246;113247;113248;113249;113250;113251;113252;113253;113254 113252 9 IIQSPGK Unmodified 741.43849 0.43848916 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 1 1 11.222 12.05 1;2 0.0053719 3075 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 99.919 75.947 835160000 40753000 36030000 33241000 0 0 0 145210000 165540000 143220000 0 0 0 66929000 57253000 57498000 0 0 0 33943000 23646000 31894000 0 0 0 9841 554 9589 183570;183571;183572;183573;183574;183575;183576;183577;183578;183579;183580;183581;183582;183583;183584;183585;183586;183587;183588;183589;183590;183591 113255;113256;113257;113258;113259;113260;113261 113255 6 IIQVHVK Unmodified 835.52797 0.52797287 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.996 13.907 2 0.060481 4278 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 61.123 38.086 304510000 35944000 32101000 36732000 4903600 3099800 4011600 27712000 24243000 24730000 0 0 0 15543000 18611000 13566000 0 0 0 21449000 22504000 19360000 0 0 0 9842 839 9590 183592;183593;183594;183595;183596;183597;183598;183599;183600;183601;183602;183603;183604;183605;183606 113262;113263;113264;113265;113266 113262 5 IIRPSANYVGPEDR Unmodified 1585.8213 0.82125436 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 18.638 19.236 3 0.061176 7293 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 40.237 32.457 21797000 6676600 7417100 7703800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9843 1374 9591 183607;183608;183609 113267;113268 113267 1 IIRPSANYVGPEDRPFVALDK Unmodified 2356.2539 0.25392986 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 2 2 31.592 30.454 3;4 6.4719E-22 14358 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 172.69 169.68 689310000 201970000 239660000 247680000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9844 1374 9592 183610;183611;183612;183613;183614;183615 113269;113270;113271;113272;113273;113274 113270 6 IISATAK Unmodified 702.42759 0.42759012 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.278 12.111 2 0.0021148 3125 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 118.01 87.812 2171300000 146370000 115970000 106530000 0 0 0 153890000 169310000 164090000 0 0 0 200820000 231390000 201600000 0 0 0 224890000 232530000 223940000 0 0 0 9845 273 9593 183616;183617;183618;183619;183620;183621;183622;183623;183624;183625;183626;183627 113275;113276;113277;113278;113279;113280;113281;113282;113283;113284;113285;113286 113280 12 IISESGTAAGVR Unmodified 1159.6197 0.619701 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 14.549 15.435 2 3.7698E-08 5093 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 160.59 152.94 1669700000 0 346800000 326150000 3824800 3073100 4131100 0 0 0 0 0 0 245360000 210030000 219950000 0 0 0 0 0 310430000 0 0 0 9846 59 9594 183628;183629;183630;183631;183632;183633;183634;183635;183636 113287;113288;113289;113290;113291;113292;113293;113294 113287 3 IISFYAK Unmodified 840.47454 0.47454032 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.863 25.715 2 0.013921 11206 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 83.287 67.12 242360000 19094000 20140000 17037000 0 0 0 17757000 19783000 17065000 0 0 0 18933000 15637000 17439000 0 0 0 26241000 25610000 27623000 0 0 0 9847 433 9595 183637;183638;183639;183640;183641;183642;183643;183644;183645;183646;183647;183648 113295;113296;113297;113298 113297 4 IISGISHGEISLVLNTLR Unmodified 1921.0997 0.09966105 1851 P76329 yedP Putative mannosyl-3-phosphoglycerate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 48.389 46.895 3 1.0798E-06 22798 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 95.814 95.067 122760000 23574000 29423000 25382000 0 0 0 17442000 13032000 13904000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9848 1851 9596 183649;183650;183651;183652;183653;183654 113299;113300;113301 113300 3 IISLAPEVL Unmodified 953.57973 0.57973367 820 P0ADY3 rplN 50S ribosomal protein L14 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 2 1 1 2 1 1 2 2 2 1 1 1 1 1 1 54.035 52.892 1;2 7.1939E-05 25645 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.37 143.37 1330400000 148620000 103050000 125500000 10022000 6141300 9154800 37910000 94848000 28755000 24638000 8737900 8240400 186070000 68643000 49905000 53399000 26926000 34190000 96917000 82912000 87908000 12042000 11894000 13996000 9849 820 9597 183655;183656;183657;183658;183659;183660;183661;183662;183663;183664;183665;183666;183667;183668;183669;183670;183671;183672;183673;183674;183675;183676;183677;183678;183679;183680;183681;183682;183683;183684 113302;113303;113304;113305;113306;113307;113308;113309;113310;113311;113312;113313;113314;113315;113316;113317;113318;113319;113320;113321;113322;113323;113324;113325;113326;113327;113328 113318 24 IISPMTGYVSR Unmodified 1222.638 0.63799361 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.008 29.485 2 0.018347 13822 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 59.645 55.033 46560000 3905100 3911900 3143700 1621900 1958300 1817800 0 0 0 3876500 4209500 0 3724600 4141900 4440200 0 0 0 0 6583000 0 0 1926300 1299300 9850 1300 9598 183685;183686;183687;183688;183689;183690;183691;183692;183693;183694;183695;183696;183697;183698 113329;113330 113329 1 IISSPTWSGLEDEHVSYNAGYTNVHELIPWR Unmodified 3569.7215 0.7215469 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 49.323 47.922 3;4 1.4905E-33 23158 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 200.47 198.68 1199500000 37244000 32462000 32366000 2091000 0 0 130670000 130880000 106810000 10109000 9507800 14252000 89340000 100600000 88612000 0 0 0 136850000 149170000 121990000 3496800 0 3093100 9851 205 9599 183699;183700;183701;183702;183703;183704;183705;183706;183707;183708;183709;183710;183711;183712;183713;183714;183715;183716;183717;183718;183719;183720;183721;183722;183723;183724;183725 113331;113332;113333;113334;113335;113336;113337;113338;113339;113340 113335 10 IITDVHEPSQAQPVADVVDVIQLPAFLAR Unmodified 3140.687 0.68699929 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 54.871 53.423 3;4 6.3269E-23 26564 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 165.42 163.1 5695300000 426900000 380320000 374210000 3796300 3179000 0 375290000 460510000 447620000 0 0 0 548540000 513800000 517880000 0 0 0 545420000 610710000 487080000 0 0 0 9852 299 9600 183726;183727;183728;183729;183730;183731;183732;183733;183734;183735;183736;183737;183738;183739;183740;183741;183742;183743;183744;183745;183746;183747;183748;183749;183750 113341;113342;113343;113344;113345;113346;113347;113348;113349;113350;113351;113352;113353;113354;113355;113356;113357;113358;113359;113360;113361;113362;113363 113341 23 IITIGSVVGTMGNGGQANYAAAK Unmodified 2192.126 0.12595216 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.882 42.367 2;3 4.3387E-35 20666 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 265.03 260.12 535570000 42481000 38244000 37772000 0 0 0 42260000 42908000 39238000 0 0 0 32871000 25670000 30778000 0 0 0 66787000 74802000 61764000 0 0 0 9853 868 9601 183751;183752;183753;183754;183755;183756;183757;183758;183759;183760;183761;183762;183763;183764;183765;183766;183767;183768;183769;183770;183771;183772;183773;183774 113364;113365;113366;113367;113368;113369;113370;113371;113372;113373;113374;113375;113376 113367 13 IITNLTEGASR Unmodified 1173.6354 0.63535107 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.673 21.608 2 4.2803E-10 9054 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 222.07 120.47 871700000 72485000 66517000 60096000 2908000 4468900 4539300 64691000 57134000 65990000 18395000 11706000 7847900 57160000 60055000 64026000 0 2403500 2342800 64313000 72991000 81322000 9488300 9203000 11618000 9854 1052 9602 183775;183776;183777;183778;183779;183780;183781;183782;183783;183784;183785;183786;183787;183788;183789;183790;183791;183792;183793;183794;183795;183796;183797 113377;113378;113379;113380;113381;113382;113383;113384;113385;113386;113387;113388;113389;113390;113391;113392;113393;113394;113395;113396 113381 20 IITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAK Unmodified 4206.1168 0.11679104 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 50.348 48.942 4 6.4502E-23 23817 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.07 135.92 273300000 20579000 16408000 0 0 0 0 34937000 26374000 26247000 0 0 0 20925000 30803000 20348000 0 0 0 24140000 27012000 25527000 0 0 0 9855 635 9603 183798;183799;183800;183801;183802;183803;183804;183805;183806;183807;183808 113397;113398;113399;113400;113401;113402;113403;113404;113405 113400 9 IITVDGDEIGEHQGLMYHTLGQR Unmodified 2581.2595 0.25948552 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 1 1 2 2 2 34.784 33.411 3;4 6.7218E-29 15832 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 193.84 191.15 1212800000 150200000 152470000 126530000 5090500 4678300 7227600 70337000 51654000 62834000 0 0 0 78145000 79316000 88551000 4261000 2816700 0 110930000 109180000 108520000 0 0 0 9856 1272 9604 183809;183810;183811;183812;183813;183814;183815;183816;183817;183818;183819;183820;183821;183822;183823;183824;183825;183826;183827;183828;183829;183830;183831;183832;183833;183834;183835;183836;183837;183838 113406;113407;113408;113409;113410;113411;113412;113413;113414;113415;113416;113417;113418;113419;113420;113421;113422;113423;113424;113425;113426 113420 21 IIVACDAGMGSSAMGAGVLR Unmodified 1934.9376 0.9376228 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 40.69 38.846 2;3 8.3551E-47 18796 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 218.5 185.09 174460000 9362200 11909000 9499900 1510600 1999300 2050500 19864000 19893000 19796000 3913900 3684200 5218300 15486000 14816000 13608000 0 0 0 10675000 11170000 0 0 0 0 9857 33 9605 183839;183840;183841;183842;183843;183844;183845;183846;183847;183848;183849;183850;183851;183852;183853;183854;183855;183856;183857 113427;113428;113429;113430;113431;113432;113433;113434;113435;113436;113437;113438;113439;113440;113441;113442 113436 16 IIVACGGAVATSTMAAEEIK Unmodified 1991.0067 0.0067482219 1461 P37188 gatB Galactitol-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 2 2 2 2 2 1 1 2 1 38.058 36.26 2;3 7.3604E-30 17959 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 212.17 207.09 2223500000 29405000 0 30861000 1517200 1771500 1970000 402760000 412360000 405840000 0 7968300 0 314850000 288850000 72976000 0 0 0 74903000 96163000 81340000 0 0 0 9858 1461 9606 183858;183859;183860;183861;183862;183863;183864;183865;183866;183867;183868;183869;183870;183871;183872;183873;183874;183875;183876;183877;183878;183879;183880 113443;113444;113445;113446;113447;113448;113449;113450;113451;113452;113453;113454;113455;113456;113457 113443 14 IIVACGGAVATSTMAAEEIKELCQNHNIPVELIQCR Unmodified 3994.9737 0.97369731 1461 P37188 gatB Galactitol-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 51.446 50.231 4;5 3.832E-37 18036 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 181.89 180.45 515170000 9789800 13954000 0 49666000 62872000 57049000 5977300 0 0 31963000 38165000 32787000 49200000 30527000 22652000 0 0 16792000 22994000 23042000 35365000 12374000 0 0 9859 1461 9607 183881;183882;183883;183884;183885;183886;183887;183888;183889;183890;183891;183892;183893;183894;183895;183896;183897;183898;183899;183900 113458;113459;113460;113461;113462;113463;113464;113465;113466;113467 113464 9 IIVATDHEDVAR Unmodified 1337.6939 0.69392858 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 15.716 16.441 2;3 8.813E-09 5633 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 175.73 169.14 1852600000 129400000 124180000 112410000 634300 532900 747310 165850000 191870000 167070000 1105800 1330600 0 134450000 124430000 125550000 0 0 0 203830000 190690000 176860000 1019000 636830 0 9860 97 9608 183901;183902;183903;183904;183905;183906;183907;183908;183909;183910;183911;183912;183913;183914;183915;183916;183917;183918;183919;183920;183921;183922;183923;183924;183925;183926;183927;183928;183929;183930;183931 113468;113469;113470;113471;113472;113473;113474;113475;113476;113477;113478;113479;113480;113481;113482;113483;113484;113485;113486;113487;113488;113489;113490 113482 23 IIVDTYGGMAR Unmodified 1194.6067 0.60669348 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.527 27.264 2 2.993E-05 12533 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 161.02 115.3 3035700000 253130000 231580000 212610000 4785900 5063200 3235600 307300000 337950000 358700000 9754000 9455900 10744000 190730000 202790000 201250000 1557300 950500 1112600 231150000 235270000 224010000 1349200 0 1226400 9861 388 9609 183932;183933;183934;183935;183936;183937;183938;183939;183940;183941;183942;183943;183944;183945;183946;183947;183948;183949;183950;183951;183952;183953;183954 113491;113492;113493;113494;113495;113496;113497;113498;113499;113500;113501;113502;113503 113498 12 IIVDTYGGMAR Oxidation (M) 1210.6016 0.6016081 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 23.247 22.555 2 0.0032688 9825 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 69.812 56.775 44293000 0 0 0 0 1011700 788770 11351000 6513200 7154300 0 0 0 4978700 0 3784300 0 0 0 0 8711200 0 0 0 0 9862 388 9609 183955;183956;183957;183958;183959;183960;183961;183962 113504;113505 113504 173 2 IIVIDVSENR Unmodified 1156.6452 0.64518747 255 P0A6K3 def Peptide deformylase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 32.005 30.653 2 0.0032421 14879 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 74.2 36.669 117270000 18113000 12335000 10718000 0 0 0 17286000 15906000 13928000 0 0 0 8962800 8989500 7444000 0 0 0 3588800 0 0 0 0 0 9863 255 9610 183963;183964;183965;183966;183967;183968;183969;183970;183971;183972 113506 113506 1 IIVIDVSENRDER Unmodified 1556.8158 0.81583463 255 P0A6K3 def Peptide deformylase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.662 24.62 2 9.1128E-07 10993 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.89 125.6 64424000 7771500 6416400 6890100 0 0 0 7967900 4984400 0 0 0 0 4491800 3464900 4747200 0 0 0 6659900 5055400 5974500 0 0 0 9864 255 9611 183973;183974;183975;183976;183977;183978;183979;183980;183981;183982;183983;183984 113507;113508;113509 113509 3 IIVIPNGK Unmodified 852.54329 0.54328858 1042 P0C0S1 mscS Small-conductance mechanosensitive channel yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.723 22.909 2 0.0015707 8363 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 107.74 83.772 145820000 5642900 4461700 5772100 5022100 4724300 4989800 9315500 6968400 5343600 12738000 12138000 14023000 5574900 5627000 4814600 2743800 1638100 0 5264300 6241000 8370600 4901400 5188700 4317000 9865 1042 9612 183985;183986;183987;183988;183989;183990;183991;183992;183993;183994;183995;183996;183997;183998;183999;184000;184001;184002;184003;184004;184005;184006;184007 113510;113511;113512;113513;113514;113515 113511 6 IIVLAPYHISK Unmodified 1252.7543 0.75434399 1657 P63204 gadE Transcriptional regulator GadE yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1 1 1 30.822 29.338 2;3 0.00093988 9331 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 61.435 61.435 73088000 0 0 0 1615900 0 0 0 0 0 12036000 16084000 13287000 0 0 0 11460000 9991400 8120900 0 0 0 0 0 491620 9866 1657 9613 184008;184009;184010;184011;184012;184013;184014;184015;184016;184017 113516;113517;113518;113519;113520;113521;113522 113518 6 IIVQEMGESSK Unmodified 1219.6118 0.61183843 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.354 20.36 2 2.5608E-05 8132 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 134.05 126.99 224110000 0 0 0 2666700 2261000 2703500 64592000 60183000 71269000 4802800 4012900 4093100 0 0 0 0 1239200 0 0 0 0 3993500 2296800 0 9867 804 9614 184018;184019;184020;184021;184022;184023;184024;184025;184026;184027;184028;184029 113523;113524;113525;113526;113527;113528 113525 6 IIVSAWNVGELDK Unmodified 1442.7769 0.77692993 407 P0A884 thyA Thymidylate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.921 42.406 2 1.6918E-05 20669 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.02 125.5 587630000 57086000 39586000 41022000 0 0 0 38585000 36864000 38202000 0 0 0 48628000 36429000 35283000 0 0 0 81869000 72666000 61404000 0 0 0 9868 407 9615 184030;184031;184032;184033;184034;184035;184036;184037;184038;184039;184040;184041 113529;113530;113531;113532;113533;113534;113535;113536;113537;113538 113532 9 IIVSLMAK Unmodified 873.53576 0.53576037 109 P05194 aroD 3-dehydroquinate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 31.514 29.936 2 0.0021654 14574 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 102.77 84.108 59436000 0 0 0 0 0 0 10885000 10710000 10283000 0 0 0 0 0 0 0 0 0 8934600 9736600 8887100 0 0 0 9869 109 9616 184042;184043;184044;184045;184046;184047 113539;113540;113541;113542 113539 2 IIVVSDEVAADTVR Unmodified 1485.8039 0.80387296 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 1 2 1 34.166 32.651 2;3 8.3276E-11 11127 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 196.48 189.36 3010600000 82648000 82051000 69634000 5848700 7343600 6881000 454620000 453470000 376130000 42564000 37211000 50489000 209840000 180930000 187730000 53813000 40896000 40331000 188530000 211410000 188700000 14448000 10759000 14366000 9870 1745 9617 184048;184049;184050;184051;184052;184053;184054;184055;184056;184057;184058;184059;184060;184061;184062;184063;184064;184065;184066;184067;184068;184069;184070;184071;184072;184073;184074;184075;184076;184077;184078;184079;184080;184081;184082;184083;184084;184085;184086;184087;184088;184089 113543;113544;113545;113546;113547;113548;113549;113550;113551;113552;113553;113554;113555;113556;113557;113558;113559;113560;113561;113562;113563;113564;113565;113566;113567;113568;113569;113570;113571;113572;113573;113574;113575;113576;113577;113578;113579;113580;113581;113582;113583 113546 38 IIVVSDEVAADTVRK Unmodified 1613.8988 0.89883598 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 26.741 25.588 2;3 6.0655E-09 9070 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 158.41 132.47 964500000 0 1760600 2466800 16774000 17516000 15935000 12842000 13337000 11185000 158410000 111180000 125680000 18016000 5765500 6186600 130790000 98553000 96762000 6151500 5853900 5626000 31950000 33862000 37902000 9871 1745 9618 184090;184091;184092;184093;184094;184095;184096;184097;184098;184099;184100;184101;184102;184103;184104;184105;184106;184107;184108;184109;184110;184111;184112;184113;184114;184115;184116;184117;184118;184119;184120;184121;184122;184123;184124;184125 113584;113585;113586;113587;113588;113589;113590;113591;113592;113593;113594;113595;113596;113597;113598;113599;113600;113601;113602;113603;113604 113600 21 IIVVTSGK Unmodified 815.51165 0.5116541 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.471 17.023 2 0.00098544 4797 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 114.78 78.598 2886600000 265320000 292230000 276240000 14991000 12354000 14569000 206040000 226840000 230620000 38645000 19776000 27278000 230840000 169460000 156980000 14606000 9539500 11442000 214570000 215900000 197290000 10532000 12273000 18306000 9872 899 9619 184126;184127;184128;184129;184130;184131;184132;184133;184134;184135;184136;184137;184138;184139;184140;184141;184142;184143;184144;184145;184146;184147;184148;184149 113605;113606;113607;113608;113609;113610;113611;113612;113613;113614;113615;113616;113617;113618;113619;113620;113621;113622;113623;113624;113625;113626;113627;113628 113605 24 IIWPENDINLK Unmodified 1353.7293 0.72925145 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.04 40.246 2 7.9363E-05 20132 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.81 116.24 889240000 56892000 55089000 50135000 746070 923920 828300 75694000 65298000 62749000 0 0 1517800 86127000 75715000 82575000 0 0 0 95150000 92574000 83975000 1130200 1255300 869860 9873 1500 9620 184150;184151;184152;184153;184154;184155;184156;184157;184158;184159;184160;184161;184162;184163;184164;184165;184166;184167;184168 113629;113630;113631;113632;113633;113634;113635;113636;113637;113638;113639;113640;113641 113629 13 IIWPTVK Unmodified 855.52182 0.52182486 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.684 32.244 2 0.0053367 15836 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.07 90.826 361140000 104480000 88815000 87057000 0 0 0 6772400 5535700 6819600 0 0 0 8674400 7279700 7775200 0 0 0 11590000 13361000 12976000 0 0 0 9874 1112 9621 184169;184170;184171;184172;184173;184174;184175;184176;184177;184178;184179;184180 113642;113643;113644;113645;113646;113647;113648;113649;113650;113651;113652 113642 11 IIYDYFR Unmodified 988.50182 0.5018177 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 36.11 34.798 2 0.0014403 16686 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.96 93.566 466470000 0 83389000 87156000 0 0 0 0 0 78073000 0 0 13652000 39573000 37697000 0 2511100 2411900 0 54130000 0 63468000 0 0 4408100 9875 218 9622 184181;184182;184183;184184;184185;184186;184187;184188;184189;184190;184191 113653;113654;113655;113656;113657;113658 113655 6 IIYEQDLIVAR Unmodified 1331.7449 0.74490152 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 37.508 35.791 2 0.00026545 16630 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 116.05 111.11 247770000 0 23614000 0 0 0 0 23423000 25447000 23605000 0 0 0 23195000 26646000 24255000 0 0 0 27844000 28169000 21568000 0 0 0 9876 1564 9623 184192;184193;184194;184195;184196;184197;184198;184199;184200;184201 113659;113660;113661;113662;113663;113664;113665;113666;113667 113666 9 IIYTGPIDQYFDYR Unmodified 1762.8566 0.85663681 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 1 49.943 48.54 2;3 2.7076E-26 22841 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 227.94 220.97 2517500000 111780000 99488000 91655000 1124600 0 0 212510000 227170000 230790000 0 0 2326500 218290000 225790000 204830000 0 0 0 295030000 298680000 292960000 2583900 0 2523500 9877 1491 9624 184202;184203;184204;184205;184206;184207;184208;184209;184210;184211;184212;184213;184214;184215;184216;184217;184218;184219;184220;184221;184222;184223;184224;184225;184226;184227;184228;184229 113668;113669;113670;113671;113672;113673;113674;113675;113676;113677;113678;113679;113680;113681;113682 113677 15 IKADAEEAAR Unmodified 1072.5513 0.55128709 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 2 2 2 2 10.829 11.445 2;3 0.00063056 2749 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.13 95.533 1854300000 324410000 128990000 135740000 3429800 3803000 4379800 100090000 100380000 97537000 21651000 21408000 6879700 30408000 0 22655000 26253000 0 3021200 288140000 235300000 290520000 0 9280300 0 9878 62 9625 184230;184231;184232;184233;184234;184235;184236;184237;184238;184239;184240;184241;184242;184243;184244;184245;184246;184247;184248;184249;184250;184251;184252;184253;184254;184255;184256 113683;113684;113685;113686;113687;113688;113689;113690;113691;113692 113691 10 IKADWQVR Unmodified 1014.5611 0.56106391 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 17.16 17.149 2 0.0086558 4845 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 87.323 8.2065 57352000 0 0 0 0 0 0 0 0 0 9021300 10079000 4629100 0 0 0 12351000 4279000 4366600 0 0 0 4530100 3510400 4584300 9879 1057 9626 184257;184258;184259;184260;184261;184262;184263;184264;184265 113693;113694 113693 2 IKAEVAPDLSVHLLDGMGR Unmodified 2020.0775 0.0775454 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 2 1 2 2 2 2 1 1 1 2 2 2 39.807 38.007 3;4 0.0026297 15173 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 56.529 53.14 75620000 0 0 0 3723300 1214300 3274100 0 0 0 13232000 13473000 13352000 0 0 0 2147800 3206500 3441500 0 0 0 6581400 5732100 6241500 9880 1058 9627 184266;184267;184268;184269;184270;184271;184272;184273;184274;184275;184276;184277;184278;184279;184280;184281;184282;184283;184284;184285 113695;113696;113697 113695 2 IKAPIVHALR Unmodified 1116.7131 0.71314788 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 2 2 2 2 2 2 2 2 2 1 2 1 1 1 2 1 15.468 16.108 2;3 0.003491 3952 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 81.548 81.548 327690000 7481400 7761900 10344000 18491000 16221000 14486000 49282000 52993000 54397000 15315000 14358000 12868000 5534600 7798700 5705100 0 866990 0 9384800 12591000 11817000 0 0 0 9881 147 9628 184286;184287;184288;184289;184290;184291;184292;184293;184294;184295;184296;184297;184298;184299;184300;184301;184302;184303;184304;184305;184306;184307;184308;184309;184310;184311;184312;184313;184314;184315 113698;113699;113700;113701;113702 113701 5 IKDDDVR Unmodified 859.43995 0.43994572 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 2 2 1 1 1 9.1438 10.029 2 0.048625 1942 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 68.915 51.148 33455000 0 3792000 0 0 0 0 0 0 0 0 0 0 5814800 5696400 948850 0 0 0 0 8840500 8362100 0 0 0 9882 122 9629 184316;184317;184318;184319;184320;184321;184322;184323 113703;113704 113704 2 IKDFYQK Unmodified 940.50182 0.5018177 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 12.436 13.328 2 0.030852 3913 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 79.307 50.778 77767000 0 0 0 0 0 0 14703000 0 12853000 0 0 0 5825100 5755200 6472100 0 0 0 12143000 9991200 10025000 0 0 0 9883 1482 9630 184324;184325;184326;184327;184328;184329;184330;184331 113705 113705 1 IKDIEAK Unmodified 815.47527 0.4752686 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.548 11.364 2 0.0023829 2708 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.04 53.288 1235900000 97368000 75978000 75997000 0 0 0 107700000 107100000 107080000 0 0 0 122400000 100700000 97327000 0 0 0 117980000 107310000 118990000 0 0 0 9884 288 9631 184332;184333;184334;184335;184336;184337;184338;184339;184340;184341;184342;184343 113706;113707;113708;113709;113710;113711;113712;113713 113707 6 IKDLVASGQLGIFANGYWGHPAMK Unmodified 2572.326 0.32604895 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 44.701 42.695 4 0.0033383 17444 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 52.359 49.782 81873000 0 0 0 0 0 0 0 0 0 11942000 12827000 17764000 7320500 0 0 0 0 0 0 9239300 0 13898000 8882300 0 9885 723 9632 184344;184345;184346;184347;184348;184349;184350 113714;113715;113716 113714 3 IKDLVVFTDENNSK Unmodified 1620.8359 0.83590137 1292 P27240 rfaY Lipopolysaccharide core heptose(II) kinase RfaY yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.55 26.164 3 0.00859 9635 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 51.695 45.664 72719000 2511800 0 2226200 0 0 872160 5922400 5498700 5893800 4017700 3928100 4209100 4154400 3300100 3260300 0 0 0 6499200 7053600 5918700 2752100 3332300 1368000 9886 1292 9633 184351;184352;184353;184354;184355;184356;184357;184358;184359;184360;184361;184362;184363;184364;184365;184366;184367;184368 113717;113718;113719;113720 113718 4 IKDVIGK Unmodified 771.48544 0.48543935 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.913 12.52 2 0.0020294 3363 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.66 90.052 1055200000 60034000 54805000 38271000 5503100 4355400 4506400 96186000 86099000 90578000 3495100 3061700 3060400 98556000 82550000 90914000 1441400 396330 499620 108540000 104450000 110710000 2147800 2696300 2292500 9887 107 9634 184369;184370;184371;184372;184373;184374;184375;184376;184377;184378;184379;184380;184381;184382;184383;184384;184385;184386;184387;184388;184389;184390;184391;184392 113721;113722;113723;113724;113725;113726;113727;113728;113729;113730;113731;113732;113733;113734;113735;113736;113737;113738;113739;113740 113724 20 IKEASAQGKPPLDIHVLPR Unmodified 2068.1793 0.17930835 1085 P13024 fdhE Protein FdhE yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.532 22.657 5 0.10711 9582 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 27.324 25.052 56787000 7127500 10399000 8574700 0 1004600 1370500 0 0 3873700 1752400 1627800 1539700 4070400 0 0 0 0 0 5490100 4413000 5543400 0 0 0 9888 1085 9635 184393;184394;184395;184396;184397;184398;184399;184400;184401;184402;184403;184404;184405 113741;113742;113743 113743 0 IKEEDFIDR Unmodified 1163.5823 0.58225287 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 19.911 20.172 2;3 7.7347E-05 7931 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.36 134.16 2924100000 203570000 184530000 176620000 8746800 8264600 8535400 250900000 215000000 246790000 36110000 33255000 29892000 215680000 225330000 211400000 10849000 8638300 7911400 299980000 264210000 221990000 18674000 17615000 19629000 9889 882 9636 184406;184407;184408;184409;184410;184411;184412;184413;184414;184415;184416;184417;184418;184419;184420;184421;184422;184423;184424;184425;184426;184427;184428;184429;184430;184431;184432;184433;184434;184435;184436;184437;184438;184439;184440;184441;184442;184443;184444;184445;184446;184447;184448;184449;184450;184451;184452 113744;113745;113746;113747;113748;113749;113750;113751;113752;113753;113754;113755;113756;113757;113758;113759;113760;113761;113762;113763;113764;113765;113766;113767;113768;113769;113770;113771;113772;113773;113774;113775;113776;113777;113778 113760 35 IKEELFYPSNEEK Unmodified 1624.7985 0.79845323 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.301 23.276 3 0.0050636 10307 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 44.989 40.274 171160000 13331000 17401000 14446000 3350200 3989600 3511400 10706000 14946000 12856000 2961100 2642700 3264300 10115000 4698000 5236900 0 0 0 13934000 14451000 12871000 2229500 1719200 2501500 9890 438 9637 184453;184454;184455;184456;184457;184458;184459;184460;184461;184462;184463;184464;184465;184466;184467;184468;184469;184470;184471;184472;184473 113779;113780;113781;113782;113783;113784 113780 6 IKEETVQLR Unmodified 1114.6346 0.63462279 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 2 1 2 2 1 1 2 2 1 1 1 2 1 2 2 13.533 14.227 2;3 0.00011823 3194 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 121.73 89.413 169250000 3191900 0 0 18301000 20739000 22872000 8646000 0 6952600 5950300 3707800 5754800 6580600 5692500 3349500 0 0 0 3962300 5316900 10965000 6881200 16333000 14057000 9891 1899 9638 184474;184475;184476;184477;184478;184479;184480;184481;184482;184483;184484;184485;184486;184487;184488;184489;184490;184491;184492;184493;184494;184495;184496;184497;184498;184499;184500;184501 113785;113786;113787;113788;113789;113790;113791;113792;113793 113792 9 IKEWILDQR Unmodified 1199.6663 0.66625727 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 2 2 2 2 26.711 25.604 2;3 0.0036227 11530 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 57.149 47.827 234380000 38081000 32323000 29715000 0 0 0 11460000 11710000 12374000 0 0 0 13430000 9965600 13859000 0 0 0 20599000 19187000 21677000 0 0 0 9892 1429 9639 184502;184503;184504;184505;184506;184507;184508;184509;184510;184511;184512;184513;184514;184515;184516;184517;184518;184519;184520;184521;184522 113794;113795;113796;113797;113798 113796 4 IKEWYEK Unmodified 994.51238 0.51238239 13;7 CON__P13645;CON__P02535-1 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.302 15.615 2 0.0025427 4154 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 129.4 108.24 209410000 0 0 0 7430100 6943000 6713000 0 0 0 16044000 14687000 10556000 0 0 0 29260000 7673400 8845200 0 0 0 39359000 32231000 29673000 + 9893 13;7 9640 184523;184524;184525;184526;184527;184528;184529;184530;184531;184532;184533;184534 113799;113800;113801;113802;113803;113804;113805;113806;113807;113808;113809;113810 113806 12 IKFEMEQNLR Unmodified 1306.6704 0.67035637 16 CON__P35527 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 1 2 2 2 25.143 23.878 2;3 1.7146E-07 8885 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 151.22 116.44 1083800000 0 0 0 16499000 15827000 19608000 0 0 0 279240000 265980000 228460000 0 0 0 0 0 0 3220900 0 0 89703000 83869000 81403000 + 9894 16 9641 184535;184536;184537;184538;184539;184540;184541;184542;184543;184544;184545;184546;184547;184548;184549;184550;184551;184552;184553;184554 113811;113812;113813;113814;113815;113816;113817;113818;113819;113820;113821;113822;113823;113824;113825;113826;113827 113812 17 IKFEMEQNLR Oxidation (M) 1322.6653 0.66527099 16 CON__P35527 yes yes 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 25.245 23.903 3 0.0017707 8699 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 72.275 63.762 22693000 0 0 0 868300 775530 856520 0 0 0 4491600 6244800 5369400 0 0 0 0 0 0 0 0 0 2236200 1850800 0 + 9895 16 9641 184555;184556;184557;184558;184559;184560;184561;184562 113828;113829;113830 113829 4 3 IKFSADDIQR Unmodified 1191.6248 0.62478638 1752 P69831 gatC Galactitol permease IIC component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 20.574 20.541 2;3 0.00069697 6796 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 84.658 64.452 301390000 0 0 0 21083000 20955000 20478000 0 0 0 67650000 59187000 55398000 0 0 0 2941700 0 0 0 0 0 16665000 17049000 19982000 9896 1752 9642 184563;184564;184565;184566;184567;184568;184569;184570;184571;184572;184573;184574;184575;184576;184577;184578;184579;184580;184581 113831;113832;113833;113834;113835;113836;113837;113838;113839;113840;113841;113842 113831 9 IKGDLVSKPYIDITLNLMK Unmodified 2160.2228 0.22281265 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.175 43.76 4 0.005606 21802 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 28.325 27.949 88930000 11625000 10356000 6853300 0 0 0 9343000 8302100 5008500 0 0 0 4617400 4910400 4550900 0 0 0 7893200 8986100 6483600 0 0 0 9897 232 9643 184582;184583;184584;184585;184586;184587;184588;184589;184590;184591;184592;184593 113843 113843 1 IKGEGEAEMLGFYEAMQNHTIK Unmodified 2495.1825 0.18248076 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.386 39.721 3 1.6081E-06 19803 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 91.091 87.187 303190000 53617000 42694000 35511000 0 0 0 24837000 25154000 23937000 0 0 0 13743000 15200000 13835000 0 0 0 17379000 17373000 19912000 0 0 0 9898 1341 9644 184594;184595;184596;184597;184598;184599;184600;184601;184602;184603;184604;184605 113844 113844 1 IKGENDWSSEQLSWLDR Unmodified 2061.9756 0.97558275 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 40.142 38.401 3 1.7306E-06 18014 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 91.401 87.852 96498000 0 0 0 0 0 0 7626200 8711100 9062700 0 0 0 8238300 9951600 10018000 0 0 0 13704000 15895000 13291000 0 0 0 9899 193 9645 184606;184607;184608;184609;184610;184611;184612;184613;184614 113845;113846;113847;113848;113849 113847 5 IKGEPVDPAK Unmodified 1052.5866 0.58660996 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.419 12.252 2 0.00018454 3211 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.85 113.7 238480000 25295000 23559000 29946000 0 0 0 27375000 29999000 22258000 0 0 0 12813000 10395000 11387000 0 0 0 15367000 16381000 13705000 0 0 0 9900 154 9646 184615;184616;184617;184618;184619;184620;184621;184622;184623;184624;184625;184626 113850;113851;113852;113853;113854;113855;113856;113857;113858;113859 113850 10 IKGFSGEDATPALEGADVVLISAGVAR Unmodified 2642.3915 0.39154555 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 50.923 49.652 3 1.0904E-07 24301 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.6 101.07 159280000 22590000 14811000 18420000 4547800 4087300 3304900 9770000 11870000 7334600 0 0 0 0 0 6907500 0 0 0 19462000 17733000 18445000 0 0 0 9901 1642 9647 184627;184628;184629;184630;184631;184632;184633;184634;184635;184636;184637;184638;184639 113860;113861;113862;113863;113864;113865;113866;113867 113866 8 IKGPILCLVGPPGVGK Unmodified 1603.9484 0.94836913 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 37.604 35.999 2;3 3.1333E-07 12657 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 137.16 137.16 1224300000 63699000 57033000 52539000 0 805400 0 64095000 79425000 84746000 43283000 40446000 34843000 48799000 41419000 35445000 133900000 98075000 107570000 58639000 61591000 53321000 24861000 19789000 19965000 9902 536 9648 184640;184641;184642;184643;184644;184645;184646;184647;184648;184649;184650;184651;184652;184653;184654;184655;184656;184657;184658;184659;184660;184661;184662;184663;184664;184665;184666;184667;184668;184669;184670;184671;184672;184673;184674;184675;184676;184677;184678;184679;184680;184681;184682 113868;113869;113870;113871;113872;113873;113874;113875;113876;113877;113878;113879;113880;113881;113882;113883;113884;113885;113886;113887;113888;113889;113890;113891;113892;113893;113894;113895;113896;113897;113898;113899;113900;113901;113902;113903;113904;113905 113869 36 IKGYDGPIVECEK Unmodified 1506.7388 0.73882986 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 1 By MS/MS 1 18.925 18.925 2 0.02992 5611 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 78.653 72.872 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9903 124 9649 184683 113906 113906 1 IKHEIGSAYPGDEVR Unmodified 1669.8424 0.84238373 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 14.165 14.738 2;3;4 1.0338E-14 4658 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 220.69 216.23 3432500000 202840000 190100000 234550000 39626000 34877000 36036000 242490000 268730000 221280000 176390000 146170000 166770000 136990000 136050000 126100000 42691000 32701000 37381000 258740000 242560000 248940000 76012000 64321000 70135000 9904 564 9650 184684;184685;184686;184687;184688;184689;184690;184691;184692;184693;184694;184695;184696;184697;184698;184699;184700;184701;184702;184703;184704;184705;184706;184707;184708;184709;184710;184711;184712;184713;184714;184715;184716;184717;184718;184719;184720;184721;184722;184723;184724;184725;184726;184727;184728;184729;184730;184731;184732;184733;184734;184735;184736;184737;184738;184739;184740;184741;184742;184743;184744;184745;184746;184747;184748;184749;184750;184751 113907;113908;113909;113910;113911;113912;113913;113914;113915;113916;113917;113918;113919;113920;113921;113922;113923;113924;113925;113926;113927;113928;113929;113930;113931;113932;113933;113934;113935;113936;113937;113938;113939;113940;113941;113942;113943;113944;113945;113946;113947;113948;113949;113950;113951;113952;113953;113954;113955;113956;113957;113958;113959;113960;113961;113962;113963;113964;113965;113966;113967;113968;113969;113970;113971;113972;113973 113927 67 IKHEIGSAYPGDEVREIEVR Unmodified 2296.1812 0.18115885 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.803 22.114 4 8.8496E-07 6815 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 89.982 87.239 140620000 0 0 0 8600000 15069000 16704000 0 0 0 17210000 15905000 15574000 0 0 0 5917500 6329600 6149400 0 0 0 11876000 9198000 12091000 9905 564 9651 184752;184753;184754;184755;184756;184757;184758;184759;184760;184761;184762;184763 113974;113975;113976;113977;113978;113979;113980;113981;113982 113974 9 IKIGDALEQQ Unmodified 1113.603 0.60298831 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 26.821 25.327 2 0.056091 9190 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 56.432 43.395 36131000 0 0 0 2967900 3081200 3287300 0 0 0 3109800 5703200 5685500 0 0 0 0 0 0 0 0 0 4248700 3878500 4169200 9906 819 9652 184764;184765;184766;184767;184768;184769;184770;184771;184772 113983;113984;113985 113985 3 IKLPADSTR Unmodified 999.57129 0.57129425 1628 P60716 lipA Lipoyl synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.518 14.267 2 0.00061743 3630 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 112.84 74.604 520070000 36598000 31433000 32352000 10964000 15080000 15843000 29039000 26176000 30868000 2261400 0 0 34037000 27706000 25683000 0 0 0 46955000 59395000 50430000 15122000 16218000 13914000 9907 1628 9653 184773;184774;184775;184776;184777;184778;184779;184780;184781;184782;184783;184784;184785;184786;184787;184788;184789;184790;184791 113986;113987;113988;113989;113990;113991;113992;113993;113994;113995;113996 113987 10 IKLPEYLGFFAGK Unmodified 1481.8282 0.82823722 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 1 1 2 48 46.688 2;3 2.667E-05 23259 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.62 89.941 603050000 18769000 19852000 16669000 3974800 3366600 3000800 58096000 60670000 55657000 20874000 33922000 27385000 44160000 37283000 35247000 5659700 4401600 8057000 36574000 40450000 43286000 7662600 8707300 9330800 9908 1742 9654 184792;184793;184794;184795;184796;184797;184798;184799;184800;184801;184802;184803;184804;184805;184806;184807;184808;184809;184810;184811;184812;184813;184814;184815;184816;184817;184818;184819;184820;184821;184822;184823;184824;184825;184826;184827;184828;184829;184830;184831 113997;113998;113999;114000;114001;114002;114003;114004;114005;114006;114007;114008;114009;114010;114011;114012;114013;114014;114015;114016;114017;114018;114019;114020;114021;114022;114023;114024;114025;114026;114027;114028;114029;114030;114031;114032;114033;114034 114005 38 IKLPEYLGFFAGKR Unmodified 1637.9293 0.92934824 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 2 1 1 42.061 39.844 3;4 0.010892 16276 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 47.189 46.874 30109000 0 0 0 1483300 1212100 1386200 0 0 0 7386300 8255000 6192700 0 0 0 0 0 0 0 0 0 1829600 2363300 0 9909 1742 9655 184832;184833;184834;184835;184836;184837;184838;184839;184840;184841;184842;184843 114035;114036;114037;114038 114035 3 IKLVGVIPEDQSVLR Unmodified 1664.9825 0.98250603 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 37.691 36.166 3 9.7681E-05 14398 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 79.885 79.885 85267000 0 0 0 7188800 7156800 8397300 0 0 0 12435000 11821000 10924000 0 0 0 5173500 5045300 4998400 0 0 0 5723700 6403200 0 9910 899 9656 184844;184845;184846;184847;184848;184849;184850;184851;184852;184853;184854 114039;114040;114041;114042;114043;114044;114045;114046 114040 8 IKLVSSAGTGHFYTTTK Unmodified 1809.9625 0.96249887 360 P0A7N9 rpmG 50S ribosomal protein L33 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 19.626 19.66 3;4 2.4366E-05 5780 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 85.563 79.553 93236000 0 0 0 8791000 9836800 8276700 0 0 0 5937500 5754900 5462400 0 0 0 10067000 8426600 8113100 0 0 0 8910900 7641700 6017900 9911 360 9657 184855;184856;184857;184858;184859;184860;184861;184862;184863;184864;184865;184866;184867;184868;184869 114047;114048;114049;114050;114051;114052;114053;114054;114055;114056;114057;114058 114047 12 IKNELEPK Unmodified 969.5495 0.54949617 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.453 12.286 2 0.0013375 3199 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 123.72 86.075 523790000 22138000 18377000 18733000 0 0 0 55088000 56211000 64644000 0 0 0 59433000 56515000 52816000 0 0 0 38271000 47129000 34439000 0 0 0 9912 213 9658 184870;184871;184872;184873;184874;184875;184876;184877;184878;184879;184880;184881 114059;114060;114061;114062;114063 114059 5 IKNSVETMMVNLEGVDIPLGMISQYLPK Unmodified 3118.6117 0.61165078 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 55.554 54.083 3 2.5886E-06 21867 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 86.869 80.966 126820000 0 0 0 8336800 11166000 9277400 0 3961600 3328500 21163000 21119000 25930000 0 0 0 0 0 0 0 0 0 11415000 0 11123000 9913 1046 9659 184882;184883;184884;184885;184886;184887;184888;184889;184890;184891 114064;114065 114065 2 IKPDDIHFAR Unmodified 1210.6459 0.64585618 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 18.142 18.583 3 0.055828 6864 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 39.917 28.704 194600000 0 0 0 0 0 0 55650000 48543000 42484000 0 0 0 0 0 0 0 0 0 0 47922000 0 0 0 0 9914 1778 9660 184892;184893;184894;184895 114066 114066 1 IKPGQLVLLEAFGGGFTWGSALVR Unmodified 2515.3951 0.39511479 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.008 53.566 3 5.1807E-11 26356 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.1 132.03 878760000 76166000 79411000 65930000 3529100 1897800 1988800 68779000 66370000 71094000 0 0 0 59056000 66163000 54825000 0 0 0 93591000 99464000 70501000 0 0 0 9915 273 9661 184896;184897;184898;184899;184900;184901;184902;184903;184904;184905;184906;184907;184908;184909;184910 114067;114068;114069;114070;114071;114072;114073;114074;114075;114076;114077;114078 114070 12 IKPYLLNNGQNPPAR Unmodified 1693.9264 0.92638813 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.74 20.904 3 4.7716E-07 6197 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 119.25 116.89 266900000 12213000 11519000 7454500 13783000 11774000 12784000 6110500 5547600 6783800 10894000 8907300 8876600 9767900 7054800 7764500 4966100 6368000 6623500 23669000 22846000 20668000 15334000 12071000 13122000 9916 150 9662 184911;184912;184913;184914;184915;184916;184917;184918;184919;184920;184921;184922;184923;184924;184925;184926;184927;184928;184929;184930;184931;184932;184933;184934 114079;114080;114081;114082;114083;114084;114085;114086;114087 114085 9 IKQLENMFGQPLLVR Unmodified 1784.9971 0.99711023 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 39.184 39.306 3 3.5062E-06 13699 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 98.592 96.468 59232000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25091000 16663000 17478000 0 0 0 0 0 0 9917 456 9663 184935;184936;184937 114088;114089;114090 114090 3 IKTWQDNGGALAECAILYR Unmodified 2178.0892 0.089172718 80 P03018 uvrD DNA helicase II yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 37.049 37.172 3 4.7009E-05 12795 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 80.316 77.554 19247000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7147100 6158900 5941100 0 0 0 0 0 0 9918 80 9664 184938;184939;184940 114091 114091 1 IKYSPDYFTFGDVQHDKDTVK Unmodified 2502.2067 0.2067049 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 30.495 28.715 5 0.075163 11022 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 33.024 32.717 24589000 0 0 0 0 0 0 0 0 0 5783900 5234200 6007000 0 0 0 0 0 1851500 0 0 0 3439600 2272400 0 9919 1408 9665 184941;184942;184943;184944;184945;184946 114092;114093 114093 2 ILAATQQALK Unmodified 1055.6339 0.63389451 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.078 19.423 2 3.6276E-05 7643 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 142.19 122.4 827480000 49607000 50005000 47585000 1582500 1971400 1664900 92185000 78409000 78177000 2085800 1901800 1648400 60315000 55806000 52433000 0 436160 573810 89803000 79698000 77775000 1223400 1278000 1313500 9920 1586 9666 184947;184948;184949;184950;184951;184952;184953;184954;184955;184956;184957;184958;184959;184960;184961;184962;184963;184964;184965;184966;184967;184968;184969 114094;114095;114096;114097;114098;114099;114100;114101;114102;114103;114104;114105;114106 114095 12 ILADIAVFDK Unmodified 1103.6227 0.62266112 354 P0A7L3 rplT 50S ribosomal protein L20 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.896 41.327 2 0.00056781 20142 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.15 41.081 6695100000 890640000 809270000 767400000 50632000 47202000 45948000 313960000 271000000 248640000 109340000 85817000 90308000 337780000 299900000 358840000 52303000 44718000 62285000 490410000 531000000 518110000 100370000 90001000 79253000 9921 354 9667 184970;184971;184972;184973;184974;184975;184976;184977;184978;184979;184980;184981;184982;184983;184984;184985;184986;184987;184988;184989;184990;184991;184992;184993 114107;114108;114109;114110;114111;114112;114113;114114;114115;114116;114117;114118;114119;114120;114121;114122;114123;114124;114125;114126;114127;114128;114129 114118 23 ILAEEIER Unmodified 971.52876 0.52876073 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.079 21.917 2 0.0023436 8853 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.28 43.117 370720000 56379000 47639000 42828000 4460000 0 0 25625000 25658000 23271000 3654500 3456900 3183300 15002000 9436900 12107000 0 658030 0 32067000 35009000 27253000 1626500 0 1404200 9922 198 9668 184994;184995;184996;184997;184998;184999;185000;185001;185002;185003;185004;185005;185006;185007;185008;185009;185010;185011;185012;185013;185014 114130;114131;114132;114133;114134;114135;114136;114137;114138;114139;114140 114140 11 ILAEWLTALR Unmodified 1184.6917 0.69174374 1549 P40191 pdxK Pyridoxine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.403 51.156 2 0.00023186 25314 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.33 75.465 367370000 39280000 39061000 37716000 0 0 0 27910000 36871000 32974000 0 0 0 24992000 24769000 24304000 0 0 0 23318000 30471000 25709000 0 0 0 9923 1549 9669 185015;185016;185017;185018;185019;185020;185021;185022;185023;185024;185025;185026 114141;114142;114143;114144;114145;114146;114147;114148;114149;114150;114151 114142 4 ILALAETNAELEK Unmodified 1413.7715 0.7715102 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.697 32.079 2 2.9838E-14 15223 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.11 127.1 771810000 112330000 102490000 0 0 1289700 829680 109830000 103390000 90135000 2824100 1926100 2223200 89456000 74947000 78200000 874660 0 0 0 0 0 1065100 0 0 9924 1144 9670 185027;185028;185029;185030;185031;185032;185033;185034;185035;185036;185037;185038;185039;185040;185041;185042;185043;185044 114152;114153;114154;114155;114156;114157;114158;114159;114160;114161;114162;114163 114156 11 ILALAETNAELEKLDAEGR Unmodified 2055.0848 0.084798847 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.888 39.248 3 8.1173E-07 19016 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.32 95.107 131780000 0 0 0 5320400 0 3968600 9325000 7121300 5269300 10164000 11257000 9399800 6074800 0 3495300 5743900 4320200 6143000 7815700 9626300 9589500 5198600 6067000 5885900 9925 1144 9671 185045;185046;185047;185048;185049;185050;185051;185052;185053;185054;185055;185056;185057;185058;185059;185060;185061;185062;185063 114164;114165 114165 2 ILALIDGMVDHASDDELFASGYLR Unmodified 2620.2843 0.28430329 1684 P64540 yfcL Uncharacterized protein YfcL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 1 54.545 53.069 3 1.7863E-40 26374 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.02 200.86 802020000 79609000 73445000 74346000 0 0 0 37476000 36322000 20009000 0 0 0 70202000 64921000 50156000 0 0 0 105440000 102490000 87599000 0 0 0 9926 1684 9672 185064;185065;185066;185067;185068;185069;185070;185071;185072;185073;185074;185075;185076;185077;185078;185079;185080 114166;114167;114168;114169;114170;114171;114172;114173;114174;114175 114170 10 ILAMLGDSVTTDHISPAGSIKPDSPAGR Unmodified 2805.4331 0.43309279 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 1 1 1 1 36.423 34.898 3;4 5.2234E-31 16636 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 184.88 184.88 2387800000 832640000 659560000 743040000 0 0 0 34339000 33643000 28618000 0 0 0 7298000 0 6855300 0 0 0 14222000 12995000 14610000 0 0 0 9927 1254 9673 185081;185082;185083;185084;185085;185086;185087;185088;185089;185090;185091;185092;185093;185094 114176;114177;114178;114179;114180;114181;114182;114183;114184 114183 9 ILAMLGDSVTTDHISPAGSIKPDSPAGR Oxidation (M) 2821.428 0.42800742 1254 P25516 acnA Aconitate hydratase A yes yes 0 1 1 By matching By MS/MS 1 1 32.305 31.15 4 8.3449E-06 14557 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 81.292 78.715 40062000 22008000 0 18054000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9928 1254 9673 185095;185096 114185 114185 519 1 ILAQSIEVYQR Unmodified 1318.7245 0.72450043 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 2 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 30.221 28.833 2;3 3.8986E-08 13366 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 206.78 144.82 2158800000 91105000 88812000 75513000 13426000 14065000 13784000 124620000 121700000 122910000 131110000 122050000 110200000 98153000 89903000 84123000 96051000 58625000 62268000 141970000 140340000 121640000 86901000 79923000 69646000 9929 1057 9674 185097;185098;185099;185100;185101;185102;185103;185104;185105;185106;185107;185108;185109;185110;185111;185112;185113;185114;185115;185116;185117;185118;185119;185120;185121;185122;185123;185124;185125;185126;185127;185128;185129;185130;185131;185132;185133;185134;185135;185136;185137;185138;185139 114186;114187;114188;114189;114190;114191;114192;114193;114194;114195;114196;114197;114198;114199;114200;114201;114202 114196 14 ILCQMIGR Unmodified 989.51504 0.5150417 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 25.767 24.639 2 0.0005566 11381 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.94 123.35 245690000 0 0 0 0 0 0 44273000 42120000 44260000 0 0 0 26695000 26215000 23200000 0 0 0 13284000 12940000 12703000 0 0 0 9930 427 9675 185140;185141;185142;185143;185144;185145;185146;185147;185148;185149 114203;114204;114205;114206;114207;114208 114203 6 ILCYLYLSPER Unmodified 1425.7326 0.73262227 1198 P22524 mukE Chromosome partition protein MukE yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.564 41.824 2 6.9157E-05 20753 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 145.17 142.19 312640000 26495000 24779000 19974000 1695700 1383700 1655000 21599000 23329000 19911000 5024300 5086000 4613800 18580000 18086000 17754000 0 0 0 30947000 28948000 31158000 3676800 4266000 3682800 9931 1198 9676 185150;185151;185152;185153;185154;185155;185156;185157;185158;185159;185160;185161;185162;185163;185164;185165;185166;185167;185168;185169;185170 114209;114210;114211;114212;114213;114214;114215;114216;114217;114218;114219 114211 10 ILDAVPAGHDFTPLMTCYLTDSLDPNELER Unmodified 3402.6112 0.61119309 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.529 53.081 3 2.8226E-23 26355 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.23 165 919260000 170700000 164760000 161760000 0 0 0 22692000 21809000 20779000 0 0 0 58157000 50445000 48257000 0 0 0 70558000 63391000 65953000 0 0 0 9932 104 9677 185171;185172;185173;185174;185175;185176;185177;185178;185179;185180;185181;185182 114220;114221;114222;114223;114224;114225;114226;114227 114222 8 ILDDLCANQLQPLLLK Unmodified 1866.0285 0.028469942 1879 P76621 csiD Protein CsiD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 1 1 1 1 1 1 1 52.687 51.355 2;3 3.5151E-31 25462 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 244 233.68 224800000 42736000 44985000 43216000 4137200 0 7091900 20487000 20476000 15115000 0 0 0 0 4090000 1913100 0 0 0 4831800 5622100 6029100 0 0 4071100 9933 1879 9678 185183;185184;185185;185186;185187;185188;185189;185190;185191;185192;185193;185194;185195;185196;185197;185198;185199;185200;185201 114228;114229;114230;114231;114232;114233;114234 114228 7 ILDEAGLPGELR Unmodified 1281.6929 0.69286595 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.974 35.127 2 3.7378E-08 16965 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 160.75 133.45 262900000 18588000 23248000 19052000 285250 326400 0 25215000 25784000 24651000 1392200 734690 734070 16230000 14845000 18166000 0 0 0 26794000 23355000 22975000 524640 0 0 9934 35 9679 185202;185203;185204;185205;185206;185207;185208;185209;185210;185211;185212;185213;185214;185215;185216;185217;185218;185219 114235;114236;114237;114238;114239;114240;114241;114242;114243;114244;114245;114246 114239 12 ILDHFDAVK Unmodified 1056.5604 0.56039521 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.752 21.749 3 0.01525 9169 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 51.445 27.224 165400000 0 0 0 0 0 0 20772000 20176000 20991000 0 0 0 18445000 15811000 9378100 0 0 0 20266000 20039000 19518000 0 0 0 9935 193 9680 185220;185221;185222;185223;185224;185225;185226;185227;185228 114247;114248 114247 2 ILDIIPETLHQR Unmodified 1446.8195 0.81946344 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 2 2 2 37.449 35.767 2;3 7.974E-12 17616 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 190.88 151.86 2811800000 148350000 155990000 136130000 907970 1297100 5866400 173380000 209910000 203610000 5406000 8814700 10994000 255650000 238570000 278300000 3614400 2789600 3549200 350290000 264300000 325840000 10683000 9854000 7725400 9936 499 9681 185229;185230;185231;185232;185233;185234;185235;185236;185237;185238;185239;185240;185241;185242;185243;185244;185245;185246;185247;185248;185249;185250;185251;185252;185253;185254;185255;185256;185257;185258;185259;185260;185261;185262;185263;185264;185265;185266;185267;185268;185269;185270 114249;114250;114251;114252;114253;114254;114255;114256;114257;114258;114259;114260;114261;114262;114263;114264;114265;114266;114267;114268;114269;114270;114271;114272;114273;114274;114275 114252 26 ILDIMGLSR Unmodified 1016.5689 0.56885141 414 P0A8A4 ppsR Phosphoenolpyruvate synthase regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.545 42.023 2 4.6203E-06 20936 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.16 128.14 270370000 40517000 40254000 33960000 674580 0 0 21740000 19746000 19385000 0 0 0 12280000 12640000 13196000 0 0 0 17968000 18840000 19172000 0 0 0 9937 414 9682 185271;185272;185273;185274;185275;185276;185277;185278;185279;185280;185281;185282;185283 114276;114277;114278;114279;114280;114281;114282;114283;114284;114285;114286;114287 114276 12 ILDKEGEQMLAAAGK Unmodified 1572.8181 0.81814282 435 P0A8I8 rlmH Ribosomal RNA large subunit methyltransferase H yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 26.968 25.846 3 0.0022626 11262 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 62.287 59.813 87036000 0 0 0 0 0 0 0 9491800 0 0 0 0 10358000 10415000 8760100 0 0 0 17125000 16119000 14767000 0 0 0 9938 435 9683 185284;185285;185286;185287;185288;185289;185290 114288;114289;114290;114291 114291 1 ILDLIWETLTVK Unmodified 1442.8385 0.83846755 1396 P32680 yjaG Uncharacterized protein YjaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.391 54.031 2 4.6683E-05 26775 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.98 128.25 381410000 32302000 32335000 30757000 0 0 0 23873000 28366000 21409000 0 0 0 33429000 30755000 27594000 7378500 0 0 37262000 36014000 39932000 0 0 0 9939 1396 9684 185291;185292;185293;185294;185295;185296;185297;185298;185299;185300;185301;185302;185303 114292;114293;114294;114295;114296 114295 5 ILDVLIPPAK Unmodified 1077.6798 0.67978207 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 1 1 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 41.368 39.718 2;3 0.00063698 14166 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 103.56 103.56 1283900000 96099000 93539000 87908000 18480000 18443000 17532000 101910000 86993000 90586000 31776000 29456000 21118000 84920000 70984000 72655000 6889600 3403400 5473600 95235000 106360000 93116000 16130000 17279000 17621000 9940 245 9685 185304;185305;185306;185307;185308;185309;185310;185311;185312;185313;185314;185315;185316;185317;185318;185319;185320;185321;185322;185323;185324;185325;185326;185327;185328;185329;185330;185331;185332;185333;185334;185335;185336;185337;185338;185339;185340 114297;114298;114299;114300;114301;114302;114303;114304;114305;114306;114307;114308;114309;114310;114311;114312;114313;114314;114315;114316;114317;114318;114319;114320;114321;114322;114323;114324;114325;114326;114327;114328;114329;114330;114331;114332;114333;114334;114335;114336;114337 114327 41 ILDWIKPYQK Unmodified 1302.7336 0.73360855 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 1 2 1 1 2 1 35.023 33.643 2;3 5.0775E-06 15882 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 130.66 121.12 1479400000 517530000 463480000 444180000 1340400 1705700 2487400 0 0 5775600 0 0 0 3521000 4459000 3319600 0 0 0 7837200 14236000 9538600 0 0 0 9941 1305 9686 185341;185342;185343;185344;185345;185346;185347;185348;185349;185350;185351;185352;185353;185354;185355;185356;185357;185358 114338;114339;114340;114341;114342;114343;114344;114345 114344 8 ILDYIKPDYVHVLYQGR Unmodified 2091.1153 0.11531111 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.014 39.147 4 6.8624E-05 19147 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.31 62.237 408360000 44584000 42991000 39302000 0 0 0 46691000 44232000 45394000 3967500 3267900 3376200 14312000 14895000 18244000 0 0 0 28368000 27850000 26053000 0 2596400 2240800 9942 1910 9687 185359;185360;185361;185362;185363;185364;185365;185366;185367;185368;185369;185370;185371;185372;185373;185374;185375 114346;114347;114348;114349;114350;114351;114352;114353;114354;114355;114356;114357 114352 12 ILDYPAR Unmodified 846.45995 0.45995289 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 20.243 20.67 2 0.070179 8091 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.432 67.063 289190000 30494000 29827000 26051000 0 0 0 0 23290000 25026000 0 0 0 22322000 21548000 20784000 0 0 0 29039000 30309000 30496000 0 0 0 9943 1143 9688 185376;185377;185378;185379;185380;185381;185382;185383;185384;185385;185386 114358;114359;114360;114361;114362 114360 0 ILDYPARPLK Unmodified 1184.6917 0.69174374 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 21.936 21.824 2;3 1.3137E-06 8960 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.25 111.57 2440100000 238940000 203540000 168470000 4539400 3414500 4751600 214740000 206060000 181050000 4624200 3327500 4058700 156480000 134020000 141220000 0 1836300 2101900 253400000 265960000 229090000 8543100 5642900 4279300 9944 1143 9689 185387;185388;185389;185390;185391;185392;185393;185394;185395;185396;185397;185398;185399;185400;185401;185402;185403;185404;185405;185406;185407;185408;185409;185410;185411;185412;185413;185414;185415;185416;185417;185418;185419;185420;185421;185422;185423 114363;114364;114365;114366;114367;114368;114369;114370;114371;114372;114373;114374;114375;114376;114377;114378;114379;114380;114381;114382;114383;114384;114385;114386;114387;114388;114389 114373 27 ILEALFFNK Unmodified 1093.6172 0.61718181 1288 P27126 rfaS Lipopolysaccharide core biosynthesis protein RfaS yes yes 0 0 0 By MS/MS 1 47.584 46.284 2 0.12704 22524 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 55.676 50.586 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9945 1288 9690 185424 114390 114390 1 ILEDEVVGVEAQR Unmodified 1455.7569 0.75692277 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.578 29.026 2 0.00027798 11495 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 84.479 76.834 61630000 5699300 4088300 0 2685800 0 2606600 4916700 3061800 4192000 5687500 4588700 0 4345200 3348900 2825400 0 0 0 4191000 4429000 4964200 0 0 0 9946 1083 9691 185425;185426;185427;185428;185429;185430;185431;185432;185433;185434;185435;185436;185437;185438;185439 114391;114392;114393 114391 1 ILEEAVSTALELASGK Unmodified 1629.8825 0.88251721 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.768 53.304 2 5.362E-10 25399 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 141.38 117.39 441400000 44138000 45840000 0 0 0 0 38938000 36851000 37059000 0 2066000 0 39186000 39583000 32166000 0 0 0 35622000 39915000 50040000 0 0 0 9947 948 9692 185440;185441;185442;185443;185444;185445;185446;185447;185448;185449;185450;185451 114394;114395;114396;114397;114398;114399;114400;114401;114402;114403 114401 10 ILEHVCPQIPADKPR Unmodified 1771.9403 0.94032364 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 1 20.59 20.742 2;3;4 9.8211E-07 6112 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 126.1 116.67 625250000 42072000 38453000 30924000 1994400 1391900 1277200 36992000 35329000 30158000 7789200 8340800 8045500 36487000 14609000 31015000 46409000 54253000 49762000 42044000 44907000 46392000 6134700 6540800 3931000 9948 395 9693 185452;185453;185454;185455;185456;185457;185458;185459;185460;185461;185462;185463;185464;185465;185466;185467;185468;185469;185470;185471;185472;185473;185474;185475;185476;185477;185478;185479;185480;185481;185482;185483;185484;185485;185486;185487;185488;185489;185490;185491;185492;185493;185494;185495;185496 114404;114405;114406;114407;114408;114409;114410;114411;114412;114413;114414;114415;114416;114417;114418;114419;114420;114421;114422;114423;114424;114425;114426;114427 114405 22 ILEIEGLPDLK Unmodified 1238.7122 0.71220441 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1 1 1 1 2 1 1 1 3 2 3 1 1 1 2 3 3 1 1 1 47.541 46.238 2;3 3.933E-05 22274 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 150.08 140.86 7934900000 1206600000 1133200000 1066600000 2970800 3542300 3084800 409700000 372110000 331930000 2599800 2454000 2801900 417210000 376770000 386330000 1747800 1867300 1189700 760510000 761200000 681060000 2799600 3456900 3219100 9949 1444 9694 185497;185498;185499;185500;185501;185502;185503;185504;185505;185506;185507;185508;185509;185510;185511;185512;185513;185514;185515;185516;185517;185518;185519;185520;185521;185522;185523;185524;185525;185526;185527;185528;185529;185530;185531;185532;185533;185534;185535 114428;114429;114430;114431;114432;114433;114434;114435;114436;114437;114438;114439;114440;114441;114442;114443;114444;114445;114446 114436 18 ILEITPER Unmodified 969.5495 0.54949617 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.283 24.267 2 0.00076589 10386 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 124.08 101.55 686360000 49031000 47979000 51258000 0 0 0 74758000 0 81263000 0 0 0 64495000 65655000 50184000 0 0 0 68659000 66549000 66529000 0 0 0 9950 558 9695 185536;185537;185538;185539;185540;185541;185542;185543;185544;185545;185546;185547 114447;114448;114449;114450;114451;114452;114453;114454;114455;114456;114457 114455 11 ILELAGFLDSYIPEPER Unmodified 1961.0146 0.014594017 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 5 1 1 2 1 2 3 2 1 1 1 4 4 5 2 2 2 3 5 5 2 2 2 55.487 54.196 2;3 6.2044E-31 26488 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 278.41 269.89 60351000000 6672200000 6975800000 1774600000 55746000 239830000 49743000 18171000 1475800000 1660100000 62319000 81026000 72461000 7423300000 7515000000 7475100000 68446000 60511000 63708000 2142800000 8216700000 7989100000 76164000 87188000 95321000 9951 1048 9696 185548;185549;185550;185551;185552;185553;185554;185555;185556;185557;185558;185559;185560;185561;185562;185563;185564;185565;185566;185567;185568;185569;185570;185571;185572;185573;185574;185575;185576;185577;185578;185579;185580;185581;185582;185583;185584;185585;185586;185587;185588;185589;185590;185591;185592;185593;185594;185595;185596;185597;185598;185599;185600;185601;185602;185603;185604;185605;185606;185607;185608;185609 114458;114459;114460;114461;114462;114463;114464;114465;114466;114467;114468;114469;114470;114471;114472;114473;114474;114475;114476;114477;114478;114479;114480;114481;114482;114483;114484;114485;114486;114487;114488;114489;114490;114491;114492;114493;114494;114495;114496;114497;114498;114499;114500;114501;114502;114503;114504;114505;114506;114507;114508;114509;114510;114511 114475 52 ILELDGLLK Unmodified 1012.6168 0.61684746 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.303 45.976 2 0.00013676 22308 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.08 98.081 1059900000 4729900 4580400 5737900 2620500 2691500 2591500 46137000 49568000 45319000 36242000 37555000 36625000 57346000 64418000 61424000 18394000 15614000 19781000 146930000 137580000 137580000 47438000 42433000 36548000 9952 1064 9697 185610;185611;185612;185613;185614;185615;185616;185617;185618;185619;185620;185621;185622;185623;185624;185625;185626;185627;185628;185629;185630;185631;185632;185633 114512;114513;114514;114515;114516;114517;114518;114519;114520;114521;114522;114523;114524;114525;114526;114527;114528;114529;114530;114531;114532;114533 114525 19 ILELDGLLKR Unmodified 1168.718 0.71795849 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 38.398 37.32 3 8.3052E-05 14589 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 93.111 62.037 16076000 0 0 0 0 0 0 0 0 0 0 2989000 4233100 0 0 0 1610100 1454400 2049300 0 0 0 0 3740200 0 9953 1064 9698 185634;185635;185636;185637;185638;185639;185640;185641 114534;114535;114536;114537;114538 114537 5 ILENGEVKPLDVK Unmodified 1452.8188 0.81879474 241 P0A6F9 groS 10 kDa chaperonin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 23.494 22.766 2;3 1.0123E-12 10110 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 199.7 190.34 9540200000 1055400000 1205400000 1096100000 6335000 8637300 8501200 632620000 685190000 633400000 0 0 0 683750000 527180000 515760000 0 0 0 754950000 841120000 885880000 0 0 0 9954 241 9699 185642;185643;185644;185645;185646;185647;185648;185649;185650;185651;185652;185653;185654;185655;185656;185657;185658;185659;185660;185661;185662;185663;185664;185665;185666;185667;185668;185669;185670;185671 114539;114540;114541;114542;114543;114544;114545;114546;114547;114548;114549;114550;114551;114552;114553;114554;114555;114556;114557;114558;114559;114560 114544 22 ILEQCLNNMPEGPFK Unmodified 1788.8539 0.85387639 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 40.331 38.617 2;3 1.1186E-20 18077 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 221.55 214.89 626190000 27019000 26671000 23249000 5500300 6157000 5615200 37215000 37924000 44527000 23651000 20485000 19704000 35569000 47267000 41676000 5242100 2781400 2993800 66848000 65132000 56490000 8832900 8345700 7293600 9955 1426 9700 185672;185673;185674;185675;185676;185677;185678;185679;185680;185681;185682;185683;185684;185685;185686;185687;185688;185689;185690;185691;185692;185693;185694;185695;185696;185697;185698;185699;185700;185701;185702;185703;185704;185705;185706;185707;185708;185709;185710;185711;185712;185713;185714 114561;114562;114563;114564;114565;114566;114567;114568;114569;114570;114571;114572;114573;114574;114575;114576;114577;114578;114579;114580;114581;114582;114583;114584;114585;114586 114584 26 ILEQCLNNMPEGPFKADHPLTTPPPK Unmodified 2943.4623 0.46228443 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.336 33.787 4 5.3636E-05 13167 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 76.237 75.717 81917000 0 0 0 4391500 2680500 3496300 0 0 0 10635000 11670000 10422000 0 0 0 2878300 5951800 2915300 0 0 0 6189800 11339000 9347300 9956 1426 9701 185715;185716;185717;185718;185719;185720;185721;185722;185723;185724;185725;185726 114587;114588;114589;114590;114591;114592;114593;114594;114595;114596 114590 10 ILEQCLNNMPEGPFKADHPLTTPPPKER Unmodified 3228.606 0.60598856 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 32.499 30.428 5 0.14598 11747 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 22.399 21.753 16969000 0 0 0 2397800 0 0 0 0 0 5461400 3544800 2897600 0 0 0 0 0 0 0 0 0 0 0 2666800 9957 1426 9702 185727;185728;185729;185730;185731 114597;114598 114597 2 ILEQHDWDR Unmodified 1210.5731 0.57308516 153 P07023 tyrA T-protein;Chorismate mutase;Prephenate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.169 17.859 2 0.00017574 6451 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.69 123.32 68236000 4744800 6517100 5966100 0 0 0 6668900 4576500 6060500 0 0 0 5298100 4659700 5080000 0 0 0 6292500 6258300 6113300 0 0 0 9958 153 9703 185732;185733;185734;185735;185736;185737;185738;185739;185740;185741;185742;185743 114599;114600;114601;114602;114603;114604;114605;114606 114604 8 ILEQVQLALDNAQEKPDVIYLTGGSAR Unmodified 2940.5557 0.55565077 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 49.998 48.873 3;4 4.5805E-41 18024 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 210.22 207.57 487350000 5336800 5689700 0 0 0 960710 3122600 0 2688400 17366000 13764000 16676000 4095400 5484100 3447000 65540000 42110000 60674000 10956000 9773400 8531700 66718000 71666000 72754000 9959 1448 9704 185744;185745;185746;185747;185748;185749;185750;185751;185752;185753;185754;185755;185756;185757;185758;185759;185760;185761;185762;185763;185764;185765;185766;185767;185768;185769;185770;185771;185772 114607;114608;114609;114610;114611;114612;114613;114614;114615;114616;114617;114618;114619;114620 114611 14 ILESTPGQMTAAVDVSK Unmodified 1745.887 0.88695066 1028 P0AGL5 ratA Ribosome association toxin RatA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.811 31.186 2 1.388E-10 15147 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.18 141.34 175830000 11757000 6597300 6111100 0 0 1663600 10758000 12644000 9311100 10745000 9906200 8340700 7808100 7111800 6515800 0 0 0 13967000 13080000 12227000 8501100 9478400 9310700 9960 1028 9705 185773;185774;185775;185776;185777;185778;185779;185780;185781;185782;185783;185784;185785;185786;185787;185788;185789;185790;185791;185792 114621;114622;114623;114624;114625;114626;114627;114628;114629;114630;114631;114632 114625 12 ILETLAEIK Unmodified 1028.6118 0.61176208 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.683 33.235 2 0.0011292 15721 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 92.439 19.955 1181500000 137110000 134620000 119520000 0 0 0 105050000 101980000 108220000 0 0 0 65787000 69855000 61455000 0 0 0 88698000 94189000 95066000 0 0 0 9961 1298 9706 185793;185794;185795;185796;185797;185798;185799;185800;185801;185802;185803;185804 114633;114634;114635;114636;114637;114638;114639;114640;114641;114642;114643;114644 114641 10 ILETLAEIKK Unmodified 1156.7067 0.7067251 1298 P27298 prlC Oligopeptidase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.262 24.213 3 0.001145 11111 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 78.655 66.039 277290000 32117000 29327000 26025000 0 0 0 34729000 31509000 23552000 0 0 0 11640000 12443000 11188000 0 0 0 24385000 23828000 16549000 0 0 0 9962 1298 9707 185805;185806;185807;185808;185809;185810;185811;185812;185813;185814;185815;185816 114645;114646;114647;114648;114649;114650;114651;114652;114653;114654;114655;114656 114646 12 ILEVLQEPDNHHVSAEDLYK Unmodified 2348.1648 0.16484008 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 2 2 2 2 3 2 2 1 1 3 3 3 2 2 2 33.864 32.345 2;3;4 5.0479E-23 15389 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 215 195.6 7585300000 872190000 805660000 707120000 28647000 30935000 36762000 581040000 587940000 560340000 67823000 58419000 34967000 186270000 565930000 197620000 31338000 11961000 18980000 701770000 738820000 665210000 29567000 31586000 34419000 9963 503 9708 185817;185818;185819;185820;185821;185822;185823;185824;185825;185826;185827;185828;185829;185830;185831;185832;185833;185834;185835;185836;185837;185838;185839;185840;185841;185842;185843;185844;185845;185846;185847;185848;185849;185850;185851;185852;185853;185854;185855;185856;185857;185858;185859;185860;185861;185862;185863;185864;185865;185866;185867;185868;185869;185870;185871;185872 114657;114658;114659;114660;114661;114662;114663;114664;114665;114666;114667;114668;114669;114670;114671;114672;114673;114674;114675;114676;114677;114678;114679;114680;114681;114682;114683;114684;114685;114686;114687;114688;114689;114690;114691;114692;114693;114694;114695;114696;114697;114698;114699;114700;114701;114702;114703;114704;114705;114706 114682 50 ILEVLQEPDNHHVSAEDLYKR Unmodified 2504.266 0.26595111 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 2 1 1 1 1 2 2 2 30.186 28.601 3;4;5 1.1009E-15 10622 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 120.92 119.78 384160000 0 0 0 37078000 36872000 38400000 8414200 0 0 42243000 45335000 29463000 0 0 0 22924000 6151700 13496000 6232300 0 4549800 29707000 36081000 27213000 9964 503 9709 185873;185874;185875;185876;185877;185878;185879;185880;185881;185882;185883;185884;185885;185886;185887;185888;185889;185890;185891;185892;185893;185894;185895;185896;185897;185898;185899;185900;185901;185902;185903 114707;114708;114709;114710;114711;114712;114713;114714;114715;114716;114717;114718;114719;114720;114721;114722;114723 114717 17 ILEVPVGR Unmodified 881.53345 0.53345218 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.179 25.998 2 0.00043507 8331 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 139.27 130.44 10358000000 300090000 324910000 312210000 85003000 75655000 84196000 753690000 784610000 799910000 292190000 239350000 252040000 817610000 751610000 869960000 67445000 40820000 44308000 933620000 1007700000 876530000 244680000 206430000 193080000 9965 645 9710 185904;185905;185906;185907;185908;185909;185910;185911;185912;185913;185914;185915;185916;185917;185918;185919;185920;185921;185922;185923;185924;185925;185926;185927 114724;114725;114726;114727;114728;114729;114730;114731;114732;114733;114734;114735;114736;114737;114738;114739;114740;114741;114742;114743;114744;114745;114746;114747;114748;114749;114750 114726 27 ILEVSGCDPQTTELDGKPLADHLLAPTR Unmodified 3045.5441 0.54409981 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 1 1 1 1 1 1 1 1 2 2 2 1 2 2 2 1 1 1 39.848 38.151 3;4 1.8927E-31 18632 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 196.49 196.17 1880600000 483160000 472410000 427260000 15300000 11245000 12216000 28763000 27956000 30038000 5291700 5093300 4068400 53035000 49612000 42832000 0 2340700 0 58254000 62618000 73677000 5485400 5834100 4091400 9966 174 9711 185928;185929;185930;185931;185932;185933;185934;185935;185936;185937;185938;185939;185940;185941;185942;185943;185944;185945;185946;185947;185948;185949;185950;185951;185952;185953;185954;185955;185956;185957;185958;185959 114751;114752;114753;114754;114755;114756;114757;114758;114759;114760;114761;114762;114763 114756 13 ILEVSLDR Unmodified 943.53385 0.53384611 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.657 22.127 2 0.0037325 9724 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.673 30.468 7447100000 359910000 401610000 360270000 0 0 0 778620000 814210000 693550000 0 0 0 692660000 575590000 669020000 0 0 0 738640000 715910000 647090000 0 0 0 9967 1888 9712 185960;185961;185962;185963;185964;185965;185966;185967;185968;185969;185970;185971 114764;114765;114766;114767;114768;114769;114770;114771;114772 114764 9 ILEYLAVQSR Unmodified 1190.6659 0.66592292 536 P0A9M0 lon Lon protease yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1 2 1 1 2 2 2 1 2 2 1 34.65 33.562 2;3 6.39E-05 16035 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.34 142.92 704510000 46308000 45599000 0 2612500 0 2787100 0 67442000 71252000 0 0 0 53808000 47270000 40531000 65201000 43918000 45860000 56189000 58361000 56186000 0 1183000 0 9968 536 9713 185972;185973;185974;185975;185976;185977;185978;185979;185980;185981;185982;185983;185984;185985;185986;185987;185988;185989;185990;185991;185992;185993;185994 114773;114774;114775;114776;114777;114778;114779;114780;114781 114777 9 ILFAGDLQDDLPAR Unmodified 1542.8042 0.80420731 1537 P39406 rsmC Ribosomal RNA small subunit methyltransferase C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 46.521 45.267 2 1.5786E-08 21970 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 185.77 179.53 70474000 23788000 19833000 15535000 0 0 0 0 0 0 0 0 0 0 4273300 0 0 0 0 0 7045000 0 0 0 0 9969 1537 9714 185995;185996;185997;185998;185999 114782;114783;114784;114785 114784 3 ILFEGFITACQHHIAEK Unmodified 2013.0142 0.014216861 1810 P76038 puuD Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 36.647 35.009 3;4 2.3812E-08 16895 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.92 108.21 148860000 54422000 44691000 45908000 0 0 314970 2287700 0 0 1235100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9970 1810 9715 186000;186001;186002;186003;186004;186005;186006;186007;186008 114786;114787;114788;114789;114790 114787 5 ILFENLTPLHANSR Unmodified 1623.8733 0.87328993 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 1 2 2 2 1 1 1 1 2 2 1 1 1 1 37.809 35.995 2;3 2.0367E-08 14663 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 184.24 181.73 858230000 72180000 82697000 75222000 24597000 24603000 25391000 33237000 36586000 37166000 111500000 106600000 89881000 14398000 9092000 8404100 0 0 3219800 23552000 32614000 20355000 10562000 7472700 8904000 9971 982 9716 186009;186010;186011;186012;186013;186014;186015;186016;186017;186018;186019;186020;186021;186022;186023;186024;186025;186026;186027;186028;186029;186030;186031;186032;186033;186034;186035;186036;186037;186038;186039;186040;186041;186042 114791;114792;114793;114794;114795;114796;114797;114798;114799;114800;114801 114792 8 ILFGMAGTAR Unmodified 1035.5535 0.55353569 1566 P45424 yhcH Uncharacterized protein YhcH yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 33.637 32.166 2 0.00051539 15779 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.033 85.045 188880000 34770000 0 31635000 0 0 1852700 18372000 17406000 19122000 0 0 0 16383000 17777000 16260000 0 0 0 0 0 15298000 0 0 0 9972 1566 9717 186043;186044;186045;186046;186047;186048;186049;186050;186051;186052 114802;114803;114804;114805;114806;114807;114808;114809;114810 114802 9 ILFICGGAFAGLDK Unmodified 1480.7748 0.77482144 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.682 50.538 2 8.1847E-08 24418 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.66 131.65 835850000 49432000 50780000 45945000 6805900 5523600 5667800 92918000 79916000 83514000 9931000 8725700 9434000 63477000 57060000 48592000 3900800 2573800 2090800 73475000 59380000 63304000 4421200 4371000 4607800 9973 244 9718 186053;186054;186055;186056;186057;186058;186059;186060;186061;186062;186063;186064;186065;186066;186067;186068;186069;186070;186071;186072;186073;186074;186075;186076 114811;114812;114813;114814;114815;114816;114817;114818;114819;114820;114821;114822;114823 114817 13 ILFLEGLPNLQDLGK Unmodified 1668.9451 0.94505789 650 P0ABD3 bfr Bacterioferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.114 53.641 2 1.3026E-06 26415 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 144.1 142.52 1258800000 151000000 174870000 146560000 0 0 0 123520000 126870000 133290000 0 0 0 58633000 57735000 53099000 0 0 0 70915000 78488000 83819000 0 0 0 9974 650 9719 186077;186078;186079;186080;186081;186082;186083;186084;186085;186086;186087;186088 114824;114825;114826;114827;114828;114829;114830;114831;114832;114833;114834;114835 114827 12 ILFLNNAINHGIFSPLGIQQSHELGK Unmodified 2859.5395 0.5395472 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.563 48.163 4 5.2027E-07 19659 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 98.121 96.167 127450000 8988300 10626000 7177100 0 0 0 9437000 14517000 6937700 7966600 7495100 5889700 6199600 9229900 8586700 0 0 0 7284300 6574400 5101700 0 3016800 2422200 9975 33 9720 186089;186090;186091;186092;186093;186094;186095;186096;186097;186098;186099;186100;186101;186102;186103;186104;186105 114836;114837;114838 114836 3 ILFLVDR Unmodified 874.52764 0.52763852 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 40.637 38.896 2 0.0020767 18221 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 118.69 62.66 110250000 0 0 0 0 0 0 11999000 11093000 11329000 0 0 0 12078000 11675000 10356000 0 0 0 12413000 15495000 13815000 0 0 0 9976 193 9721 186106;186107;186108;186109;186110;186111;186112;186113;186114 114839;114840;114841;114842;114843;114844;114845;114846;114847 114845 9 ILFVGTK Unmodified 776.47963 0.47962569 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 27.841 26.641 1;2 0.0028071 12131 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.61 3.8507 6814900000 1041000000 832670000 865090000 27957000 24973000 22846000 349710000 22802000 295200000 78793000 94153000 74784000 327380000 313470000 324440000 72260000 50339000 49247000 612550000 586730000 550930000 69889000 58351000 69329000 9977 373 9722 186115;186116;186117;186118;186119;186120;186121;186122;186123;186124;186125;186126;186127;186128;186129;186130;186131;186132;186133;186134;186135;186136;186137;186138;186139;186140;186141;186142;186143;186144;186145;186146;186147;186148;186149;186150;186151;186152;186153;186154;186155;186156;186157;186158;186159;186160;186161 114848;114849;114850;114851;114852;114853;114854;114855;114856;114857;114858;114859;114860;114861;114862;114863;114864;114865;114866;114867;114868;114869;114870;114871;114872;114873;114874;114875;114876;114877 114861 30 ILFVGTKR Unmodified 932.58074 0.58073672 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.696 18.809 2 0.00046422 5473 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 143 78.228 79428000 0 0 0 5356900 6041600 4155800 0 0 0 8015900 7927500 8047500 0 0 0 12342000 3988100 5034900 0 0 0 6134200 7632100 4751900 9978 373 9723 186162;186163;186164;186165;186166;186167;186168;186169;186170;186171;186172;186173 114878;114879;114880;114881;114882;114883;114884;114885;114886;114887;114888 114878 11 ILFYTGVNHK Unmodified 1190.6448 0.64479354 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 3 4 2 2 2 2 3 3 2 1 1 1 3 3 3 2 2 2 24.494 23.506 2;3 1.27E-12 10099 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 218.79 213.48 18433000000 1929400000 1734700000 1510100000 21985000 20701000 22165000 1264500000 1183300000 1056100000 22024000 19603000 21989000 1454400000 1494800000 1815000000 7301000 7309500 7473500 1414100000 1691700000 1682000000 17679000 17777000 17088000 9979 264 9724 186174;186175;186176;186177;186178;186179;186180;186181;186182;186183;186184;186185;186186;186187;186188;186189;186190;186191;186192;186193;186194;186195;186196;186197;186198;186199;186200;186201;186202;186203;186204;186205;186206;186207;186208;186209;186210;186211;186212;186213;186214;186215;186216;186217;186218;186219;186220;186221;186222;186223;186224;186225;186226;186227;186228 114889;114890;114891;114892;114893;114894;114895;114896;114897;114898;114899;114900;114901;114902;114903;114904;114905;114906;114907;114908;114909;114910;114911;114912;114913;114914;114915;114916;114917;114918;114919;114920;114921;114922;114923;114924;114925;114926;114927;114928;114929;114930;114931;114932;114933;114934;114935;114936;114937;114938;114939;114940;114941;114942;114943;114944;114945;114946;114947;114948;114949;114950;114951;114952;114953;114954;114955;114956;114957;114958;114959 114927 70 ILGFTWNR Unmodified 1005.5396 0.53960019 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.236 40.296 2 0.00033509 20063 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 145.04 118.25 161490000 0 0 0 2127300 1934200 1981800 15092000 13468000 13241000 6082100 7822200 5811200 13112000 10931000 11858000 0 0 0 15533000 17894000 15407000 3418900 2626000 3154900 9980 324 9725 186229;186230;186231;186232;186233;186234;186235;186236;186237;186238;186239;186240;186241;186242;186243;186244;186245;186246 114960;114961;114962;114963;114964;114965;114966;114967;114968;114969;114970 114963 11 ILGGDLEPTLGNVSLDPNER Unmodified 2108.075 0.074962442 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 2 2 2 1 2 2 1 48.56 47.182 2;3 1.1571E-29 22925 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 204.35 196.98 494260000 24821000 19405000 20923000 0 0 0 43599000 37893000 37705000 0 1934700 0 54030000 53318000 44163000 0 0 0 35054000 55634000 65042000 0 742050 0 9981 558 9726 186247;186248;186249;186250;186251;186252;186253;186254;186255;186256;186257;186258;186259;186260;186261;186262;186263;186264;186265;186266;186267;186268 114971;114972;114973;114974;114975;114976;114977;114978;114979;114980;114981;114982;114983;114984;114985;114986;114987;114988 114976 18 ILGILASK Unmodified 813.53239 0.53238955 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 31.782 30.274 1;2 0.0010424 11549 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 112.37 55.86 2575100000 236630000 210240000 201380000 25950000 20293000 19213000 188030000 171950000 184990000 53492000 47586000 42537000 169500000 160960000 174520000 2096500 929650 0 206070000 211080000 194270000 17522000 16889000 18991000 9982 899 9727 186269;186270;186271;186272;186273;186274;186275;186276;186277;186278;186279;186280;186281;186282;186283;186284;186285;186286;186287;186288;186289;186290;186291;186292;186293;186294;186295;186296;186297;186298;186299;186300;186301;186302;186303;186304;186305;186306;186307;186308;186309;186310;186311 114989;114990;114991;114992;114993;114994;114995;114996;114997;114998;114999;115000;115001;115002;115003;115004;115005;115006;115007;115008;115009;115010 114991 22 ILGISLAQLR Unmodified 1082.6812 0.68117905 1530 P39356 yjhU Uncharacterized transcriptional regulator YjhU yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.828 44.168 2 3.8052E-05 21550 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.39 128.35 172130000 14145000 14382000 15271000 0 0 0 8842400 12347000 9945100 9192900 8361600 12933000 8300900 8636000 6760500 0 0 0 10134000 9310400 9820000 4933600 4472300 4345800 9983 1530 9728 186312;186313;186314;186315;186316;186317;186318;186319;186320;186321;186322;186323;186324;186325;186326;186327;186328;186329 115011;115012;115013;115014;115015;115016;115017;115018;115019;115020 115014 9 ILGLEIGADDYITK Unmodified 1519.8134 0.81337501 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 48.835 47.591 2 0.13083 22248 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 52.247 37.275 18122000 4751900 6362300 3898200 0 0 0 0 0 0 0 0 0 1332700 1776500 0 0 0 0 0 0 0 0 0 0 9984 546 9729 186330;186331;186332;186333;186334 115021 115021 0 ILGLEIGADDYITKPFNPR Unmodified 2131.1314 0.13135511 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 1 2 2 2 1 2 1 49.285 47.881 2;3 3.8312E-55 23331 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 316.42 308.11 2697400000 422220000 435030000 418310000 4814100 4179800 3221700 249360000 242750000 236200000 6374800 5073200 5541400 117180000 119500000 114440000 0 0 0 99491000 92347000 119700000 0 0 1690000 9985 546 9730 186335;186336;186337;186338;186339;186340;186341;186342;186343;186344;186345;186346;186347;186348;186349;186350;186351;186352;186353;186354;186355;186356;186357;186358;186359;186360;186361;186362;186363 115022;115023;115024;115025;115026;115027;115028;115029;115030;115031;115032;115033;115034;115035;115036;115037;115038;115039;115040;115041;115042;115043;115044;115045;115046;115047;115048 115041 27 ILGLGDQGIGGMGIPIGK Unmodified 1694.9389 0.93892665 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1 2 2 2 2 2 2 52.416 51.181 2;3 6.1547E-14 24935 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 187.44 186.02 2899100000 181730000 154130000 139740000 0 0 0 178630000 168870000 158210000 0 0 0 289200000 270490000 274840000 0 0 0 378190000 357850000 347200000 0 0 0 9986 1283 9731 186364;186365;186366;186367;186368;186369;186370;186371;186372;186373;186374;186375;186376;186377;186378;186379;186380;186381;186382;186383;186384 115049;115050;115051;115052;115053;115054;115055;115056;115057;115058;115059;115060;115061;115062;115063;115064;115065;115066 115054 18 ILGLKPTVIFADQIMYTGFAYAAR Oxidation (M) 2674.4193 0.41928063 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 2 3 2 2 2 53.279 52.511 3 2.1196E-10 21231 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 127.92 125.73 579000000 0 0 0 0 0 0 0 0 0 60383000 44044000 40239000 0 0 0 82891000 77348000 119230000 0 0 0 53694000 51798000 49367000 9987 458 9732 186385;186386;186387;186388;186389;186390;186391;186392;186393;186394;186395;186396;186397;186398;186399;186400;186401;186402 115067;115068;115069;115070;115071;115072;115073;115074;115075;115076;115077;115078;115079;115080;115081 115076 234 15 ILGLKPTVIFADQIMYTGFAYAAR Unmodified 2658.4244 0.42436601 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 4 4 4 2 1 1 5 6 5 1 1 3 5 6 55.32 54.299 2;3;4 1.1317E-59 21325 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 285.31 283.95 31089000000 27860000 29574000 2915200 6980600 5170300 4270700 15087000 11768000 0 1640600000 1496500000 1562500000 13650000 5415500 11442000 4738100000 7854300000 7307900000 22178000 0 18450000 2251900000 2045600000 2017100000 9988 458 9732 186403;186404;186405;186406;186407;186408;186409;186410;186411;186412;186413;186414;186415;186416;186417;186418;186419;186420;186421;186422;186423;186424;186425;186426;186427;186428;186429;186430;186431;186432;186433;186434;186435;186436;186437;186438;186439;186440;186441;186442;186443;186444;186445;186446;186447;186448;186449;186450;186451;186452;186453;186454;186455;186456;186457;186458;186459 115082;115083;115084;115085;115086;115087;115088;115089;115090;115091;115092;115093;115094;115095;115096;115097;115098;115099;115100;115101;115102;115103;115104;115105;115106;115107;115108;115109;115110;115111;115112;115113;115114;115115;115116;115117;115118;115119;115120;115121 115086 40 ILGMNSAR Unmodified 860.45382 0.45382165 1874 P76569 yfgD Uncharacterized protein YfgD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.533 19.055 2 0.0003704 7221 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143 60.742 1079000000 66291000 67779000 63003000 0 0 0 76292000 82161000 87962000 0 0 0 102680000 89466000 86762000 0 1010400 0 121420000 117620000 113450000 0 3103700 0 9989 1874 9733 186460;186461;186462;186463;186464;186465;186466;186467;186468;186469;186470;186471;186472;186473 115122;115123;115124;115125;115126;115127;115128 115126 7 ILGNIEVGR Unmodified 969.56073 0.56072956 511 P0A9D4 cysE Serine acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.766 25.618 2 0.00015756 11527 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.27 80.913 492510000 68807000 64555000 62170000 0 0 0 34656000 35514000 32719000 0 0 0 24348000 17321000 22388000 0 0 0 44386000 42375000 43273000 0 0 0 9990 511 9734 186474;186475;186476;186477;186478;186479;186480;186481;186482;186483;186484;186485 115129;115130;115131;115132;115133;115134;115135;115136;115137;115138;115139 115135 8 ILGSADR Unmodified 730.39735 0.39735263 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS 2 1 12.073 12.929 2 0.03085 3394 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 85.359 16.875 1539900000 0 0 0 0 0 0 0 1426000000 0 0 0 0 0 113850000 0 0 0 0 0 0 0 0 0 0 9991 882 9735 186486;186487;186488 115140;115141;115142 115142 0 ILGSVGEPINPEAWEWYWK Unmodified 2273.1157 0.11570504 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 54.898 53.473 2;3 5.2909E-10 26433 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.89 166.1 1225600000 407950000 395610000 389540000 0 0 0 0 0 0 0 0 0 5080600 0 0 0 0 0 9120600 5836600 7889400 0 4616000 0 9992 1305 9736 186489;186490;186491;186492;186493;186494;186495;186496;186497;186498;186499 115143;115144;115145;115146 115144 4 ILHIQQQLAGEQVALSDEVNQSEQTTNFHNR Unmodified 3546.7451 0.74513589 1907 P77454 glsA1 Glutaminase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 1 1 2 2 2 1 1 37.705 35.948 3;4 1.2332E-68 17838 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 266.36 264.58 1122500000 160950000 142560000 159770000 834930 0 0 156780000 209200000 181510000 4062400 0 4468400 25688000 21256000 26378000 0 0 0 0 15924000 13066000 0 0 0 9993 1907 9737 186500;186501;186502;186503;186504;186505;186506;186507;186508;186509;186510;186511;186512;186513;186514;186515;186516;186517;186518;186519;186520;186521;186522 115147;115148;115149;115150;115151;115152;115153;115154;115155;115156;115157;115158 115148 12 ILHSAETDDDLK Unmodified 1355.6569 0.65687437 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 13.244 14.097 2;3 3.8414E-12 4402 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 197.21 180.54 1426900000 260230000 260570000 235700000 823290 0 626900 104900000 110240000 124920000 0 0 452490 50165000 61819000 50004000 0 0 0 61072000 56517000 48839000 0 0 0 9994 218 9738 186523;186524;186525;186526;186527;186528;186529;186530;186531;186532;186533;186534;186535;186536;186537;186538;186539;186540;186541;186542;186543;186544;186545;186546;186547;186548;186549 115159;115160;115161;115162;115163;115164;115165;115166;115167;115168;115169;115170;115171;115172;115173;115174 115166 16 ILIGEVTVVDESEPFAHEK Unmodified 2111.0787 0.078650837 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 4 3 2 2 2 2 2 3 3 3 3 1 1 1 3 3 3 2 3 2 42.11 40.373 2;3 2.3764E-45 19723 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 259.7 238.14 10569000000 802580000 759540000 722280000 10856000 281100000 261360000 1188000000 1160200000 1060000000 264930000 254000000 266140000 543360000 441710000 473150000 23467000 13928000 17009000 478340000 517590000 473650000 267890000 283850000 3736800 9995 548 9739 186550;186551;186552;186553;186554;186555;186556;186557;186558;186559;186560;186561;186562;186563;186564;186565;186566;186567;186568;186569;186570;186571;186572;186573;186574;186575;186576;186577;186578;186579;186580;186581;186582;186583;186584;186585;186586;186587;186588;186589;186590;186591;186592;186593;186594;186595;186596;186597;186598;186599;186600;186601;186602;186603;186604 115175;115176;115177;115178;115179;115180;115181;115182;115183;115184;115185;115186;115187;115188;115189;115190;115191;115192;115193;115194;115195;115196;115197;115198;115199;115200;115201;115202;115203;115204;115205;115206;115207;115208;115209;115210;115211;115212;115213;115214;115215;115216;115217;115218;115219;115220;115221 115195 47 ILILDFGSQYTQLVAR Unmodified 1836.0145 0.014534437 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 2 1 2 2 2 54.647 53.207 2;3 2.9857E-10 26486 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 184.55 178.71 1533400000 175950000 153480000 136020000 0 0 0 24664000 111070000 27078000 0 0 0 50392000 186990000 43937000 0 0 0 224050000 210930000 188790000 0 0 0 9996 86 9740 186605;186606;186607;186608;186609;186610;186611;186612;186613;186614;186615;186616;186617;186618;186619;186620;186621;186622;186623;186624 115222;115223;115224;115225;115226;115227;115228;115229 115225 6 ILILHADHEQNASTSTVR Unmodified 2004.0389 0.038851707 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 1 2 2 4 3 3 1 1 1 3 3 3 1 4 4 3 2 2 1 17.67 18.249 2;3;4 3.7323E-55 6640 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 313.32 307.84 8711700000 1269900000 1544300000 1486400000 6200000 13413000 13863000 637140000 571600000 502930000 9563000 8360300 10100000 254390000 263620000 312970000 2146900 0 0 606760000 627650000 547270000 10233000 8189000 4684000 9997 657 9741 186625;186626;186627;186628;186629;186630;186631;186632;186633;186634;186635;186636;186637;186638;186639;186640;186641;186642;186643;186644;186645;186646;186647;186648;186649;186650;186651;186652;186653;186654;186655;186656;186657;186658;186659;186660;186661;186662;186663;186664;186665;186666;186667;186668;186669;186670;186671;186672;186673;186674;186675;186676;186677;186678;186679 115230;115231;115232;115233;115234;115235;115236;115237;115238;115239;115240;115241;115242;115243;115244;115245;115246;115247;115248;115249;115250;115251;115252;115253;115254;115255;115256;115257;115258;115259;115260;115261;115262;115263;115264;115265;115266;115267;115268;115269;115270;115271;115272;115273;115274;115275;115276;115277;115278;115279;115280;115281;115282 115262 53 ILILTPTR Unmodified 925.59605 0.59605244 1182 P21507 srmB ATP-dependent RNA helicase SrmB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 31.816 30.592 2 0.0016218 14503 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.32 93.16 29406000 8744700 8850600 9598800 0 1182700 0 0 0 0 0 0 0 1029700 0 0 0 0 0 0 0 0 0 0 0 9998 1182 9742 186680;186681;186682;186683;186684 115283 115283 1 ILINSPK Unmodified 783.48544 0.48543935 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.133 17.651 2 0.00029567 6259 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 158.53 75.305 2468600000 134270000 129170000 109830000 1285600 1036100 0 287890000 327760000 308840000 1778400 1375100 1487200 194460000 189020000 154150000 0 0 915810 213400000 214850000 195220000 669620 524290 710050 9999 1487 9743 186685;186686;186687;186688;186689;186690;186691;186692;186693;186694;186695;186696;186697;186698;186699;186700;186701;186702;186703;186704;186705 115284;115285;115286;115287 115287 3 ILINTPASQGGIGDLYNFK Unmodified 2020.0629 0.062941193 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 3 2 3 2 2 2 2 2 2 2 2 3 1 1 1 2 3 2 2 3 2 48.611 47.29 2;3 1.5503E-55 22788 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 281.26 278.13 6837900000 489830000 446830000 449940000 192290000 170350000 210000000 893990000 789140000 721490000 82838000 60285000 65979000 349390000 310520000 281960000 9175900 5478300 3726800 289990000 283880000 274180000 142910000 146100000 167650000 10000 548 9744 186706;186707;186708;186709;186710;186711;186712;186713;186714;186715;186716;186717;186718;186719;186720;186721;186722;186723;186724;186725;186726;186727;186728;186729;186730;186731;186732;186733;186734;186735;186736;186737;186738;186739;186740;186741;186742;186743;186744;186745;186746;186747;186748;186749;186750;186751;186752;186753;186754;186755 115288;115289;115290;115291;115292;115293;115294;115295;115296;115297;115298;115299;115300;115301;115302;115303;115304;115305;115306;115307;115308;115309;115310;115311;115312 115296 25 ILITGCPIGGAAEK Unmodified 1398.7541 0.754086 1534 P39384 yjiM Uncharacterized protein YjiM yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.69 29.393 2 1.9013E-05 13956 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 117.98 104.62 298790000 4899100 3954200 4147200 0 0 0 66266000 50118000 45260000 3931200 3589800 4538500 25681000 21281000 19302000 1233400 648370 512020 13157000 16705000 13570000 0 0 0 10001 1534 9745 186756;186757;186758;186759;186760;186761;186762;186763;186764;186765;186766;186767;186768;186769;186770;186771;186772;186773 115313;115314;115315;115316;115317;115318;115319;115320;115321;115322 115315 9 ILIVEDEPK Unmodified 1054.591 0.59102664 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.319 25.214 2 0.0039101 11439 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 79.906 29.3 162890000 20834000 22990000 21544000 568140 0 656410 12482000 9813400 12524000 0 0 0 11698000 7642600 8345300 0 0 0 11920000 11340000 10529000 0 0 0 10002 1728 9746 186774;186775;186776;186777;186778;186779;186780;186781;186782;186783;186784;186785;186786;186787 115323;115324;115325 115323 3 ILKEGIEK Unmodified 928.55933 0.55933258 270 P0A6P9 eno Enolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.098 12.609 2 0.0011989 2563 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 127.12 57.734 23443000 0 0 0 4581200 3561400 3367800 0 0 0 2962900 2007200 2118900 0 0 0 0 0 0 0 0 0 1824600 1508000 1510700 10003 270 9747 186788;186789;186790;186791;186792;186793;186794;186795;186796 115326;115327;115328 115326 3 ILLDAPCSATGVIR Unmodified 1484.8021 0.80209882 1449 P36929 rsmB Ribosomal RNA small subunit methyltransferase B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.841 35.909 2 0.00033877 17687 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 82.171 78.125 202040000 33414000 30200000 27241000 858670 0 0 9931900 11041000 10602000 2777800 3455200 3603700 0 0 0 0 0 0 21047000 20301000 23668000 0 0 3896000 10004 1449 9748 186797;186798;186799;186800;186801;186802;186803;186804;186805;186806;186807;186808;186809;186810 115329;115330;115331;115332;115333;115334 115331 1 ILLDTELTAEQEK Unmodified 1501.7876 0.78755419 846 P0AEC3 arcB Aerobic respiration control sensor protein ArcB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.212 25.091 3 0.1717 11256 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 4.3065 1.2216 361550000 52596000 55252000 56440000 0 0 0 25097000 30947000 23890000 0 0 0 17292000 13523000 13829000 0 0 0 18050000 31932000 22703000 0 0 0 10005 846 9749 186811;186812;186813;186814;186815;186816;186817;186818;186819;186820;186821;186822 115335;115336 115335 2 ILLEQHNGEVPEDR Unmodified 1647.8216 0.82164829 637 P0AB83 nth Endonuclease III yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 2 1 1 1 19.169 19.533 2;3 2.7984E-08 5759 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 163.78 157.54 73974000 0 0 0 0 0 0 0 0 0 0 0 0 3598300 4126500 2415300 17787000 15196000 14452000 5992000 5521000 4886300 0 0 0 10006 637 9750 186823;186824;186825;186826;186827;186828;186829;186830;186831;186832;186833 115337;115338;115339;115340;115341 115338 4 ILLGEYFR Unmodified 1009.5597 0.55966693 1881 P77148 ydhS Uncharacterized protein YdhS yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 1 41.897 40.206 2 0.00028277 19531 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.07 143.71 116530000 21219000 22341000 21173000 0 0 0 10813000 10063000 12438000 0 0 0 4589600 2929900 2391500 0 0 0 3958700 0 4612000 0 0 0 10007 1881 9751 186834;186835;186836;186837;186838;186839;186840;186841;186842;186843;186844;186845 115342;115343;115344 115343 3 ILLIGAGGASR Unmodified 1026.6186 0.61857879 1114 P15770 aroE Shikimate dehydrogenase (NADP(+)) yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 30.322 28.909 2 0.00020232 13507 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.2 67.18 281210000 20763000 21777000 21485000 0 0 0 17956000 19316000 19154000 0 0 1384900 18190000 17928000 18764000 0 0 0 34331000 37236000 32919000 0 0 0 10008 1114 9752 186846;186847;186848;186849;186850;186851;186852;186853;186854;186855;186856;186857;186858 115345;115346;115347;115348;115349;115350 115349 6 ILLIGCGK Unmodified 872.51536 0.51535927 1725 P68767 pepA Cytosol aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS 1 1 28.36 27.378 2 0.072726 12550 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.788 59.169 17169000 0 8073800 9095100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10009 1725 9753 186859;186860 115351;115352 115351 0 ILLINPTDSDAVGNAVK Unmodified 1738.9465 0.94651445 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 1 1 2 2 2 1 2 2 2 1 1 1 41.819 40.078 2;3 1.8149E-10 19777 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 174.42 150.82 8487900000 785880000 741590000 709050000 2941300 2211500 2121100 709880000 623500000 609490000 1322500 1852700 0 731030000 677050000 682190000 2486000 0 0 773920000 725450000 700780000 2149300 1730000 1321400 10010 72 9754 186861;186862;186863;186864;186865;186866;186867;186868;186869;186870;186871;186872;186873;186874;186875;186876;186877;186878;186879;186880;186881;186882;186883;186884;186885;186886;186887;186888;186889;186890;186891;186892;186893;186894;186895 115353;115354;115355;115356;115357;115358;115359;115360;115361;115362;115363;115364;115365;115366;115367;115368;115369;115370;115371;115372;115373;115374;115375;115376 115357 24 ILLQCDNLCK Unmodified 1275.6315 0.63152802 1796 P75957 lolD Lipoprotein-releasing system ATP-binding protein LolD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.498 25.927 2 0.00023898 9513 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 92.439 84.79 14086000 0 0 0 1353400 1407800 947490 0 0 0 2867400 2830700 0 0 0 0 0 0 0 0 0 0 1345500 1414600 1919600 10011 1796 9755 186896;186897;186898;186899;186900;186901;186902;186903;186904 115377;115378 115378 2 ILLSAAITVNDK Unmodified 1256.734 0.73400248 1931 P77717 ybaY Uncharacterized lipoprotein YbaY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 3 1 2 2 2 1 1 1 38.011 36.061 2 2.337E-05 12264 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 120.09 109.39 80163000 5839200 13112000 9682400 10985000 11436000 10096000 0 0 0 5183500 4901300 5534200 0 0 0 0 0 0 0 0 0 1161300 1112600 1119100 10012 1931 9756 186905;186906;186907;186908;186909;186910;186911;186912;186913;186914;186915;186916;186917;186918;186919;186920;186921;186922;186923;186924 115379;115380;115381;115382;115383;115384;115385;115386;115387;115388 115384 6 ILLSNDDGVHAPGIQTLAK Unmodified 1961.0582 0.058190166 393 P0A840 surE 5'/3'-nucleotidase SurE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.318 33.772 3 3.0063E-06 16178 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.85 83.749 280320000 27092000 22659000 24448000 0 768390 0 22229000 21365000 24906000 0 0 0 14555000 17331000 15914000 0 0 0 34433000 24206000 28598000 1141100 0 675370 10013 393 9757 186925;186926;186927;186928;186929;186930;186931;186932;186933;186934;186935;186936;186937;186938;186939 115389;115390;115391;115392;115393;115394;115395;115396 115390 6 ILLSSMPGCAVTEVEIDGVLHEYSTK Unmodified 2847.4034 0.40343215 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 5 2 2 2 2 2 4 12 10 10 3 4 4 14 13 15 3 3 5 10 8 9 52.855 51.874 2;3;4;5 1.6803E-30 20574 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 252.51 244.67 80743000000 1017900000 1038100000 817260000 100300000 93889000 90243000 22516000 22856000 519550000 757920000 665090000 6539200000 925390000 782150000 779330000 14239000000 14415000000 14975000000 1020100000 909680000 1036600000 6434600000 6811800000 6729200000 10014 383 9758 186940;186941;186942;186943;186944;186945;186946;186947;186948;186949;186950;186951;186952;186953;186954;186955;186956;186957;186958;186959;186960;186961;186962;186963;186964;186965;186966;186967;186968;186969;186970;186971;186972;186973;186974;186975;186976;186977;186978;186979;186980;186981;186982;186983;186984;186985;186986;186987;186988;186989;186990;186991;186992;186993;186994;186995;186996;186997;186998;186999;187000;187001;187002;187003;187004;187005;187006;187007;187008;187009;187010;187011;187012;187013;187014;187015;187016;187017;187018;187019;187020;187021;187022;187023;187024;187025;187026;187027;187028;187029;187030;187031;187032;187033;187034;187035;187036;187037;187038;187039;187040;187041;187042;187043;187044;187045;187046;187047;187048;187049;187050;187051;187052;187053;187054;187055;187056;187057;187058;187059;187060;187061;187062;187063;187064;187065;187066;187067;187068;187069;187070;187071;187072;187073;187074;187075;187076;187077;187078;187079;187080;187081;187082;187083;187084;187085;187086;187087;187088;187089;187090;187091;187092 115397;115398;115399;115400;115401;115402;115403;115404;115405;115406;115407;115408;115409;115410;115411;115412;115413;115414;115415;115416;115417;115418;115419;115420;115421;115422;115423;115424;115425;115426;115427;115428;115429;115430;115431;115432;115433;115434;115435;115436;115437;115438;115439;115440;115441;115442;115443;115444;115445;115446;115447;115448;115449;115450;115451;115452;115453;115454;115455;115456;115457;115458;115459;115460;115461;115462;115463;115464;115465;115466;115467;115468;115469;115470;115471;115472;115473;115474;115475;115476;115477;115478;115479;115480;115481;115482;115483;115484;115485;115486;115487;115488;115489;115490;115491;115492;115493;115494;115495;115496;115497;115498;115499;115500;115501;115502;115503;115504;115505;115506;115507;115508;115509;115510;115511;115512;115513;115514;115515;115516;115517;115518;115519;115520;115521;115522;115523;115524;115525;115526;115527;115528;115529;115530;115531;115532;115533;115534;115535;115536;115537;115538;115539 115486 142 ILLSSMPGCAVTEVEIDGVLHEYSTK Oxidation (M) 2863.3983 0.39834677 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1 2 1 2 3 3 3 2 3 2 4 7 6 2 2 2 3 4 5 49.564 48.545 2;3;4 8.0362E-31 18016 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 191.2 190.32 4492000000 22720000 7347100 15788000 3770500 3961200 2860700 16175000 9360000 14236000 420590000 374690000 419780000 15553000 21671000 14869000 636270000 508340000 604330000 20965000 17980000 19145000 422140000 427980000 471480000 10015 383 9758 187093;187094;187095;187096;187097;187098;187099;187100;187101;187102;187103;187104;187105;187106;187107;187108;187109;187110;187111;187112;187113;187114;187115;187116;187117;187118;187119;187120;187121;187122;187123;187124;187125;187126;187127;187128;187129;187130;187131;187132;187133;187134;187135;187136;187137;187138;187139;187140;187141;187142;187143;187144;187145;187146;187147;187148;187149;187150;187151;187152;187153;187154;187155;187156;187157 115540;115541;115542;115543;115544;115545;115546;115547;115548;115549;115550;115551;115552;115553;115554;115555;115556;115557;115558;115559;115560;115561;115562;115563;115564;115565;115566;115567;115568;115569;115570;115571;115572;115573;115574;115575;115576;115577;115578;115579;115580;115581;115582;115583;115584;115585;115586;115587;115588;115589;115590;115591;115592;115593;115594;115595;115596;115597;115598;115599;115600;115601;115602 115555 166 61 ILLTNAHPHNLAVK Unmodified 1539.8885 0.88854606 1701 P64636 yrfG GMP/IMP nucleotidase YrfG yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 17.361 17.975 4 0.11929 6076 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 25.731 23.18 264320000 6687800 10269000 6365500 0 0 0 27003000 28105000 25397000 1996100 0 0 23717000 23493000 13877000 0 0 0 30590000 35434000 31380000 0 0 0 10016 1701 9759 187158;187159;187160;187161;187162;187163;187164;187165;187166;187167;187168;187169;187170 115603;115604;115605;115606;115607 115607 5 ILLTRPAVEAGEK Unmodified 1395.8086 0.80856441 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.407 20.724 3 0.00038523 8108 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.705 68.79 392770000 46878000 49433000 40073000 5042400 4220800 3626700 35472000 32360000 30014000 0 0 0 18380000 16254000 12275000 0 0 0 24877000 27976000 31787000 5235300 3711000 5150000 10017 530 9760 187171;187172;187173;187174;187175;187176;187177;187178;187179;187180;187181;187182;187183;187184;187185;187186;187187;187188 115608;115609;115610;115611;115612;115613 115612 6 ILLVDDDR Unmodified 957.51311 0.51311067 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.778 26.631 2 0.00073819 12177 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.25 106.52 217720000 33058000 35533000 28343000 0 0 0 20424000 19697000 18025000 0 0 0 9780900 5707900 8262500 0 0 0 15635000 12179000 11070000 0 0 0 10018 841 9761 187189;187190;187191;187192;187193;187194;187195;187196;187197;187198;187199;187200 115614;115615;115616;115617;115618;115619;115620;115621;115622;115623 115620 10 ILLVDDDRELTSLLK Unmodified 1741.9826 0.98256561 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 49.015 47.802 2;3 2.4617E-20 23446 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 220.37 173.07 2835700000 334420000 325390000 288470000 23565000 21107000 19377000 180170000 170100000 165750000 15492000 21145000 27267000 86301000 81120000 79433000 169020000 171510000 238180000 127710000 127000000 117740000 15626000 14116000 15732000 10019 841 9762 187201;187202;187203;187204;187205;187206;187207;187208;187209;187210;187211;187212;187213;187214;187215;187216;187217;187218;187219;187220;187221;187222;187223;187224;187225;187226;187227;187228;187229;187230;187231;187232;187233;187234;187235;187236;187237;187238;187239;187240;187241;187242;187243;187244;187245;187246 115624;115625;115626;115627;115628;115629;115630;115631;115632;115633;115634;115635;115636;115637;115638;115639;115640;115641;115642;115643;115644;115645;115646;115647;115648;115649;115650;115651;115652;115653;115654;115655;115656;115657;115658;115659;115660;115661;115662;115663 115654 40 ILNEASNVR Unmodified 1014.5458 0.54580778 1971 Q47083 cbl HTH-type transcriptional regulator cbl yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.304 11.032 2 0.022441 2059 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 60.788 40.233 138890000 0 0 0 0 0 0 9014500 17211000 13185000 9042000 0 11632000 17316000 11265000 11317000 0 0 0 11582000 15796000 11527000 0 0 0 10020 1971 9763 187247;187248;187249;187250;187251;187252;187253;187254;187255;187256;187257;187258 115664;115665;115666;115667 115664 4 ILNINVPDLPLDQIK Unmodified 1703.9822 0.98217168 393 P0A840 surE 5'/3'-nucleotidase SurE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.547 52.107 2 0.024265 25854 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 56.087 55.746 164700000 17935000 12938000 10980000 0 0 0 13230000 14769000 15138000 0 0 0 7969900 6882600 8703500 0 0 0 19433000 21177000 15544000 0 0 0 10021 393 9764 187259;187260;187261;187262;187263;187264;187265;187266;187267;187268;187269;187270 115668;115669;115670 115669 0 ILNLMGR Unmodified 815.46874 0.46874343 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.912 28.566 2 8.9339E-05 13774 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.47 99.622 764950000 46068000 49264000 41983000 8099500 7379500 7811900 44521000 49245000 44344000 11179000 12614000 0 52326000 52813000 48948000 4347200 6489400 7843300 81776000 82600000 77647000 9021700 8891900 9740700 10022 862 9765 187271;187272;187273;187274;187275;187276;187277;187278;187279;187280;187281;187282;187283;187284;187285;187286;187287;187288;187289;187290;187291;187292;187293 115671;115672;115673;115674;115675;115676;115677;115678;115679;115680;115681;115682;115683;115684;115685;115686;115687 115676 15 ILNQTMPQVAAK Unmodified 1312.7173 0.71730656 1139 P17443 murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 24.58 23.583 2 0.01579 8664 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 60.717 37.288 39821000 0 0 1800200 1323800 0 1936700 0 0 3106000 3592300 4080800 3643000 2050200 0 0 738860 0 0 7090800 3509200 4159400 0 0 2789500 10023 1139 9766 187294;187295;187296;187297;187298;187299;187300;187301;187302;187303;187304;187305;187306 115688;115689;115690 115688 2 ILNTSSVIPVDGLCVR Unmodified 1741.9397 0.93965493 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 2 2 45.676 44.177 2;3 1.0486E-30 21830 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 234.92 229.64 4114600000 641660000 592890000 537660000 0 0 0 343710000 336510000 343190000 0 0 0 185670000 185260000 178370000 0 0 0 242840000 271830000 255050000 0 0 0 10024 549 9767 187307;187308;187309;187310;187311;187312;187313;187314;187315;187316;187317;187318;187319;187320;187321;187322;187323 115691;115692;115693;115694;115695;115696;115697;115698;115699;115700;115701;115702;115703;115704;115705 115693 15 ILNVSPR Unmodified 797.47594 0.4759373 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.168 17.849 2 0.0023307 6399 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.19 36.466 469200000 40548000 43523000 45189000 2860400 1724700 2035500 49111000 42087000 45536000 0 0 0 30636000 28554000 28588000 0 0 0 38150000 34137000 36078000 442110 0 0 10025 1789 9768 187324;187325;187326;187327;187328;187329;187330;187331;187332;187333;187334;187335;187336;187337;187338;187339 115706;115707;115708;115709;115710;115711;115712 115711 7 ILNYTNTEMK Unmodified 1225.6013 0.60127375 1669 P64451 ydcL Uncharacterized lipoprotein YdcL yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.5 21.923 2 0.061078 7598 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 46.001 34.85 64148000 9731900 13578000 10988000 4415300 4616000 0 0 0 0 2683000 2801000 1470600 0 1614700 0 0 0 0 3036100 5317400 3896500 0 0 0 10026 1669 9769 187340;187341;187342;187343;187344;187345;187346;187347;187348;187349;187350;187351 115713;115714 115713 1 ILPAGAAR Unmodified 767.46537 0.46537261 1596 P51981 ycjG L-Ala-D/L-Glu epimerase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.169 14.035 2 0.01232 4329 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.311 52.274 132660000 12957000 15549000 13314000 0 0 0 15591000 16779000 14798000 0 0 0 7332300 6666200 6429700 0 0 0 7670500 7429500 8144200 0 0 0 10027 1596 9770 187352;187353;187354;187355;187356;187357;187358;187359;187360;187361;187362;187363 115715;115716 115715 2 ILPALPPR Unmodified 875.55927 0.559273 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 28.716 27.381 2 0.0027847 12792 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 97.596 92.84 91699000 2887700 0 2633800 855520 912960 756110 9983300 12110000 12363000 5332900 6482600 0 5188000 4850500 5499400 918700 396550 0 7642700 8404100 0 0 2298600 2182600 10028 27 9771 187364;187365;187366;187367;187368;187369;187370;187371;187372;187373;187374;187375;187376;187377;187378;187379;187380;187381;187382;187383;187384 115717;115718;115719;115720;115721;115722;115723;115724;115725;115726 115725 10 ILPAVNK Unmodified 753.47487 0.47487467 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.801 16.34 2 0.0041666 5264 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 104.94 65.726 1036900000 65905000 61239000 57620000 0 0 0 97560000 111440000 97025000 1777300 1716200 1264200 81903000 73158000 73949000 0 0 1585200 105680000 102530000 97305000 1619600 1740500 1829100 10029 124 9772 187385;187386;187387;187388;187389;187390;187391;187392;187393;187394;187395;187396;187397;187398;187399;187400;187401;187402;187403 115727;115728;115729;115730;115731;115732;115733;115734;115735;115736;115737;115738 115736 12 ILPEHVVPAVTK Unmodified 1301.7707 0.77072234 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 23.179 22.417 2;3 1.3052E-06 9429 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.33 139.05 2211300000 247020000 223960000 226010000 0 0 0 193600000 173430000 176050000 0 911650 0 141410000 117030000 138870000 0 0 0 188660000 193280000 188810000 1546000 708440 0 10030 1298 9773 187404;187405;187406;187407;187408;187409;187410;187411;187412;187413;187414;187415;187416;187417;187418;187419;187420;187421;187422;187423;187424;187425;187426;187427;187428;187429;187430 115739;115740;115741;115742;115743;115744;115745;115746;115747;115748;115749;115750;115751;115752 115749 14 ILPELKDDK Unmodified 1069.6019 0.60192568 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 17.319 18.001 2;3 0.00015574 6470 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 115.7 112 853360000 77700000 73844000 65435000 0 0 0 124590000 126830000 105410000 0 0 0 47142000 48938000 47962000 0 0 0 45980000 43043000 46488000 0 0 0 10031 277 9774 187431;187432;187433;187434;187435;187436;187437;187438;187439;187440;187441;187442;187443;187444;187445;187446;187447;187448;187449;187450;187451;187452;187453;187454 115753;115754;115755;115756;115757;115758;115759;115760;115761;115762;115763;115764;115765;115766;115767;115768;115769;115770 115766 17 ILPELKDDKEISSHDSSTNGLINR Unmodified 2680.3668 0.36678737 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 25.497 24.408 3;4;5 4.2209E-15 11226 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.19 140.15 1918600000 194430000 168210000 181310000 0 0 0 215090000 217530000 222620000 0 0 0 110200000 88030000 78398000 0 0 0 135600000 155560000 151610000 0 0 0 10032 277 9775 187455;187456;187457;187458;187459;187460;187461;187462;187463;187464;187465;187466;187467;187468;187469;187470;187471;187472;187473;187474;187475;187476;187477;187478;187479;187480;187481;187482;187483;187484;187485;187486;187487;187488;187489;187490 115771;115772;115773;115774;115775;115776;115777;115778;115779;115780;115781;115782;115783;115784;115785;115786;115787;115788;115789;115790;115791;115792;115793;115794;115795;115796;115797;115798;115799 115776 29 ILPLVCYDLR Unmodified 1260.69 0.69002918 1976 Q47679 yafV Hydrolase YafV yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.247 43.833 2 0.004009 21264 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.716 56.262 132690000 18210000 17668000 16943000 0 0 0 15279000 16176000 15280000 0 0 0 4112200 5291400 5018900 0 0 0 5776600 6758600 6180200 0 0 0 10033 1976 9776 187491;187492;187493;187494;187495;187496;187497;187498;187499;187500;187501;187502 115800;115801 115801 2 ILPQLLAGQK Unmodified 1079.6703 0.67028001 260 P0A6L7 uxaB Altronate oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 33.184 31.727 2 0.00051539 14495 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.6 107.48 145210000 0 7845600 4930400 0 0 0 26958000 22842000 28711000 0 0 0 10755000 11236000 10851000 0 0 0 7022200 7422100 6633000 0 0 0 10034 260 9777 187503;187504;187505;187506;187507;187508;187509;187510;187511;187512;187513 115802;115803;115804;115805;115806 115804 5 ILPSITLK Unmodified 883.57425 0.57425436 110 P05458 ptrA Protease 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 33.658 32.232 2 0.0039041 14672 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 89.142 42.772 182410000 19779000 14643000 13729000 0 0 0 11610000 13383000 12691000 0 0 0 13897000 13603000 12934000 0 0 0 18595000 17088000 20457000 0 0 0 10035 110 9778 187514;187515;187516;187517;187518;187519;187520;187521;187522;187523;187524;187525;187526 115807;115808;115809;115810;115811;115812;115813;115814;115815;115816;115817;115818 115817 12 ILPSPVIK Unmodified 865.56369 0.56368968 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.345 25.222 2 0.013351 11458 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.616 73.616 937400000 66102000 69310000 64179000 1107600 1042500 867500 60046000 56465000 61233000 4970100 3414200 3159200 73804000 53757000 66615000 16623000 10483000 13434000 88431000 87232000 85870000 14721000 17609000 16928000 10036 1445 9779 187527;187528;187529;187530;187531;187532;187533;187534;187535;187536;187537;187538;187539;187540;187541;187542;187543;187544;187545;187546;187547;187548;187549;187550 115819;115820;115821;115822;115823;115824;115825;115826;115827;115828;115829;115830;115831;115832 115824 14 ILPYLDIPLQHASPR Unmodified 1731.9672 0.96719031 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.225 41.456 3 1.0959E-07 19210 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.77 110.27 964960000 89048000 72323000 71353000 7123000 6971900 5062000 66429000 64823000 61311000 9125800 7689600 8534400 52774000 48141000 49218000 0 0 0 109650000 108950000 106770000 6333800 6811600 6521100 10037 863 9780 187551;187552;187553;187554;187555;187556;187557;187558;187559;187560;187561;187562;187563;187564;187565;187566;187567;187568;187569;187570;187571 115833;115834;115835;115836;115837;115838;115839;115840;115841;115842;115843;115844;115845;115846;115847;115848;115849;115850;115851;115852;115853 115853 21 ILQGQALR Unmodified 897.5396 0.53960019 1016 P0AGG0 thiL Thiamine-monophosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.657 16.48 2 0.0005566 5672 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 132.94 108.09 179710000 18394000 19100000 18849000 0 0 251590 10431000 12712000 14289000 0 0 0 9890800 9984500 13730000 0 0 0 19031000 16673000 16379000 0 0 0 10038 1016 9781 187572;187573;187574;187575;187576;187577;187578;187579;187580;187581;187582;187583;187584 115854;115855;115856;115857;115858;115859;115860;115861;115862;115863;115864;115865 115861 12 ILQQESVK Unmodified 943.53385 0.53384611 754 P0ACW6 ydcH Uncharacterized protein YdcH yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.216 13.049 2 0.10494 3775 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 48.174 19.661 2973600000 166270000 140720000 145860000 0 0 0 343620000 383750000 351970000 0 0 0 242670000 234650000 203240000 0 0 0 264180000 260150000 236510000 0 0 0 10039 754 9782 187585;187586;187587;187588;187589;187590;187591;187592;187593;187594;187595;187596 115866;115867 115866 2 ILQVPNATR Unmodified 1010.5873 0.58727866 1972 Q47146 fadE Acyl-coenzyme A dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 14.968 15.643 2 0.005784 6220 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 73.248 62.983 1617100000 254400000 233940000 248510000 3401800 4470200 3025700 62962000 61084000 68822000 0 0 0 110160000 95705000 92682000 0 0 0 117540000 131010000 129340000 0 0 0 10040 1972 9783 187597;187598;187599;187600;187601;187602;187603;187604;187605;187606;187607;187608;187609;187610;187611;187612;187613;187614 115868;115869;115870;115871 115871 4 ILREDVQAYVK Unmodified 1332.7402 0.74015049 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 9 8 7 3 4 3 1 2 2 3 2 1 1 8 8 9 25.225 24.209 2;3 0.00010103 7485 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 144.47 117.96 19082000000 5256900 3128600 3156700 3168500000 3392100000 3451400000 0 0 0 270520000 193960000 308310000 0 0 1697000 63127000 64960000 74071000 6966400 6639300 7204700 3031700000 2526800000 2502700000 10041 133 9784 187615;187616;187617;187618;187619;187620;187621;187622;187623;187624;187625;187626;187627;187628;187629;187630;187631;187632;187633;187634;187635;187636;187637;187638;187639;187640;187641;187642;187643;187644;187645;187646;187647;187648;187649;187650;187651;187652;187653;187654;187655;187656;187657;187658;187659;187660;187661;187662;187663;187664;187665;187666;187667;187668;187669;187670;187671;187672;187673;187674;187675;187676;187677;187678;187679;187680;187681;187682;187683;187684;187685;187686;187687;187688 115872;115873;115874;115875;115876;115877;115878;115879;115880;115881;115882;115883;115884;115885;115886;115887;115888;115889;115890;115891;115892;115893;115894;115895;115896;115897;115898;115899;115900;115901;115902;115903;115904;115905;115906;115907;115908;115909;115910;115911;115912;115913;115914;115915;115916;115917;115918;115919;115920 115882 48 ILSAFIGDEIPQEILEER Unmodified 2071.0837 0.083736215 52 P00934 thrC Threonine synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 1 2 1 1 54.511 53.079 2;3 2.2685E-22 25913 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 245.55 236.1 752630000 156020000 37332000 141330000 0 0 0 6625100 4725400 7286300 0 0 0 72988000 58513000 41867000 0 0 0 99911000 67600000 58441000 0 0 0 10042 52 9785 187689;187690;187691;187692;187693;187694;187695;187696;187697;187698;187699;187700;187701;187702;187703;187704;187705 115921;115922;115923;115924;115925;115926 115923 6 ILSDNYFTLHNITYDLTR Unmodified 2198.1008 0.10078326 1457 P37128 nudK GDP-mannose pyrophosphatase NudK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.72 47.389 3 3.9538E-07 23453 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 106.16 86.602 254580000 18501000 19850000 22687000 0 0 0 27312000 24459000 25563000 0 0 0 17334000 22290000 19135000 0 0 0 19352000 19438000 18656000 0 0 0 10043 1457 9786 187706;187707;187708;187709;187710;187711;187712;187713;187714;187715;187716;187717 115927;115928;115929;115930;115931;115932;115933;115934;115935 115928 6 ILSIDTEGLTAEQIR Unmodified 1657.8887 0.88866522 1672 P64463 ydfZ Putative selenoprotein YdfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 3 3 3 3 2 2 2 2 2 42.343 40.588 2;3 3.3185E-30 19545 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 239.02 198.31 2081200000 0 1107300 0 0 0 0 449650000 414030000 386580000 0 0 0 285860000 33440000 240890000 0 0 0 91651000 89371000 88582000 0 0 0 10044 1672 9787 187718;187719;187720;187721;187722;187723;187724;187725;187726;187727;187728;187729;187730;187731;187732;187733;187734;187735;187736;187737;187738;187739;187740;187741;187742;187743;187744;187745 115936;115937;115938;115939;115940;115941;115942;115943;115944;115945;115946;115947;115948;115949;115950;115951;115952;115953 115948 18 ILSTLSLR Unmodified 901.55967 0.55966693 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 30.432 28.758 2 0.00053602 10636 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 133.81 115.83 92584000 0 0 0 14552000 12649000 13657000 0 2573600 0 6312500 5529000 5222100 0 0 0 0 1615400 0 2134100 0 2968200 9620600 6569900 9179700 10045 1899 9788 187746;187747;187748;187749;187750;187751;187752;187753;187754;187755;187756;187757;187758 115954;115955;115956;115957;115958;115959;115960 115957 7 ILSVSQQSLER Unmodified 1258.6881 0.68811492 1362 P31131 ydeJ Protein YdeJ yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 2 2 1 1 1 1 2 2 23.105 22.641 2 0.00070072 10149 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 90.108 84.187 152950000 31832000 30814000 25599000 0 0 0 5595200 15347000 17441000 0 0 0 2977900 2575000 1920700 0 0 0 4373200 6410300 8061100 0 0 0 10046 1362 9789 187759;187760;187761;187762;187763;187764;187765;187766;187767;187768;187769;187770;187771;187772;187773;187774;187775 115961;115962;115963;115964 115964 1 ILTATIENNR Unmodified 1143.6248 0.62478638 4 CON__ENSEMBL:ENSP00000377550;CON__P13646-1 yes no 0 0 0 By MS/MS By matching By MS/MS 1 1 1 20.802 20.356 2 0.0021292 6678 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 95.358 82.399 10407000 0 0 0 0 0 0 0 0 0 4163500 3082600 3160900 0 0 0 0 0 0 0 0 0 0 0 0 + 10047 4 9790 187776;187777;187778 115965;115966 115965 2 ILTEPNASITVQYK Unmodified 1575.8508 0.85082315 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.363 30.989 2 3.3542E-13 14467 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 213.34 206.22 1717300000 106190000 108730000 98445000 16527000 16558000 14499000 153760000 145910000 136580000 29559000 24820000 29670000 103170000 104660000 99521000 11692000 6451100 6180500 148670000 150540000 142160000 22328000 20219000 20489000 10048 245 9791 187779;187780;187781;187782;187783;187784;187785;187786;187787;187788;187789;187790;187791;187792;187793;187794;187795;187796;187797;187798;187799;187800;187801;187802 115967;115968;115969;115970;115971;115972;115973;115974;115975;115976;115977;115978;115979;115980;115981;115982;115983;115984;115985;115986;115987;115988;115989;115990;115991 115988 25 ILTGDKVTVELTPYDLSK Unmodified 1991.0827 0.082673582 1727 P69222 infA Translation initiation factor IF-1 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 39.518 37.822 3 0.00086261 13278 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 63.918 53.579 33619000 0 3496700 0 5021300 5665000 6413400 0 0 0 2219000 0 0 3186400 0 0 1719500 0 0 0 0 0 1379200 2526500 1992300 10049 1727 9792 187803;187804;187805;187806;187807;187808;187809;187810;187811;187812 115992;115993;115994 115992 3 ILTGDSELVAAK Unmodified 1215.6711 0.67106787 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 26.157 25.444 2 1.0243E-05 8500 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 129.85 99.287 988940000 0 0 0 0 0 0 0 0 0 0 0 5817500 270660000 252860000 235940000 24410000 16586000 16562000 52160000 52102000 61846000 0 0 0 10050 647 9793 187813;187814;187815;187816;187817;187818;187819;187820;187821;187822 115995;115996;115997;115998;115999;116000;116001;116002;116003 115995 9 ILTGNIR Unmodified 785.47594 0.4759373 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 16.207 16.907 2 0.0078225 4891 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 89.703 46.657 118360000 10313000 7648600 9470600 0 0 0 0 9939100 10826000 1772700 0 2808400 8682800 7213900 6263800 0 0 0 15242000 15825000 12351000 0 0 0 10051 1932 9794 187823;187824;187825;187826;187827;187828;187829;187830;187831;187832;187833;187834;187835 116004 116004 1 ILTGSEGTLAFITEAR Unmodified 1677.8938 0.8937506 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 46.794 45.306 2 0.00025151 16188 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 81.494 80.243 40125000 6654600 7246000 6301200 2383500 3039100 0 3095600 3308400 0 0 0 2324500 0 0 0 0 0 0 2988400 2783500 0 0 0 0 10052 1937 9795 187836;187837;187838;187839;187840;187841;187842;187843;187844;187845 116005 116005 1 ILTILQG Unmodified 756.47454 0.47454032 1461 P37188 gatB Galactitol-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.972 43.458 2 0.0045348 21587 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.41 89.347 1457300000 111910000 89876000 88563000 13161000 12608000 12991000 204300000 228980000 234650000 17277000 9555200 0 96030000 82576000 78653000 2497000 0 1147200 53307000 54958000 55894000 2679600 2785200 2909400 10053 1461 9796 187846;187847;187848;187849;187850;187851;187852;187853;187854;187855;187856;187857;187858;187859;187860;187861;187862;187863;187864;187865;187866;187867 116006;116007;116008;116009;116010;116011;116012;116013;116014;116015;116016;116017;116018;116019;116020;116021;116022;116023;116024;116025 116008 20 ILTIPGLR Unmodified 881.56984 0.56983769 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 39.165 37.455 2 0.00049393 18188 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.87 7.1102 91313000 0 0 0 0 0 313400 0 24017000 0 0 0 0 0 17918000 17342000 0 0 0 31724000 0 0 0 0 0 10054 1256 9797 187868;187869;187870;187871;187872 116026;116027;116028;116029 116027 4 ILTQDEIDVR Unmodified 1200.635 0.63501672 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 1 1 1 1 1 2 26.892 25.876 2 1.1292E-06 11114 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 168.27 109.35 1109100000 0 0 0 0 0 0 141240000 141110000 125020000 2768300 0 0 131680000 132780000 128960000 1578300 1090500 1122200 102890000 99143000 99680000 0 0 0 10055 1467 9798 187873;187874;187875;187876;187877;187878;187879;187880;187881;187882;187883;187884;187885;187886;187887 116030;116031;116032;116033;116034;116035;116036;116037 116037 3 ILTSENNR Unmodified 945.48796 0.48795855 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.742 12.273 2 1.518E-06 3178 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 192.28 152.62 618870000 91494000 0 94506000 0 0 0 73196000 74139000 71427000 7659000 5762400 6317100 47504000 44350000 42389000 1819600 1907100 1323800 0 0 55072000 0 0 0 10056 963 9799 187888;187889;187890;187891;187892;187893;187894;187895;187896;187897;187898;187899;187900;187901;187902 116038;116039;116040;116041 116038 4 ILVAVGNISGIASVDDQVK Unmodified 1897.052 0.052042156 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 5 6 8 6 3 3 1 2 2 3 2 1 1 1 1 2 1 1 2 1 48.686 47.209 2;3 2.6988E-17 22611 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.18 191.28 1030700000 102510000 87853000 96969000 91744000 94006000 119220000 47675000 42971000 28234000 89911000 75941000 88720000 8844000 5145600 6459000 0 925950 0 8195300 11619000 7807100 3716200 9469400 2770600 10057 783 9800 187903;187904;187905;187906;187907;187908;187909;187910;187911;187912;187913;187914;187915;187916;187917;187918;187919;187920;187921;187922;187923;187924;187925;187926;187927;187928;187929;187930;187931;187932;187933;187934;187935;187936;187937;187938;187939;187940;187941;187942;187943;187944;187945;187946;187947;187948;187949;187950;187951;187952;187953;187954;187955;187956;187957;187958;187959;187960;187961;187962;187963 116042;116043;116044;116045;116046;116047;116048;116049;116050;116051;116052;116053;116054;116055;116056;116057;116058;116059;116060;116061;116062;116063;116064;116065;116066;116067;116068;116069;116070;116071;116072;116073;116074;116075;116076;116077;116078;116079;116080;116081;116082;116083;116084;116085;116086;116087;116088;116089;116090;116091;116092;116093;116094;116095 116050 47 ILVDENMPYAR Unmodified 1319.6544 0.65437195 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.584 31.269 2 1.6509E-07 14921 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.23 102.16 974360000 91115000 84546000 83590000 0 0 0 81194000 91707000 0 0 0 0 84567000 76365000 86695000 0 0 0 92301000 99839000 102440000 0 0 0 10058 111 9801 187964;187965;187966;187967;187968;187969;187970;187971;187972;187973;187974;187975 116096;116097;116098;116099;116100;116101 116098 6 ILVEGTSR Unmodified 873.49198 0.4919813 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.89 15.508 2 0.00062604 4804 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 130 115.23 1079400000 86857000 99579000 87706000 7222600 6277000 6364000 70769000 70610000 70486000 12188000 9455700 9496200 71153000 67065000 60958000 0 0 0 113020000 106150000 108470000 5420100 5391700 4781500 10059 862 9802 187976;187977;187978;187979;187980;187981;187982;187983;187984;187985;187986;187987;187988;187989;187990;187991;187992;187993;187994;187995;187996 116102;116103;116104;116105;116106;116107;116108;116109;116110;116111;116112;116113;116114;116115;116116 116115 15 ILVIAADER Unmodified 998.57605 0.57604528 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 26.772 25.621 2 1.4386E-05 11236 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.75 143.36 3634200000 962990000 850000000 682870000 2223500 1988800 0 303880000 285420000 278320000 0 0 773190 38415000 37902000 34093000 0 0 0 53230000 55544000 46596000 0 0 0 10060 1373 9803 187997;187998;187999;188000;188001;188002;188003;188004;188005;188006;188007;188008;188009;188010;188011;188012;188013 116117;116118;116119;116120;116121;116122;116123;116124;116125;116126;116127;116128;116129;116130;116131;116132;116133;116134 116130 16 ILVIGPSWVGDMMMSQSLYR Unmodified 2282.1262 0.12615185 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.465 54.053 3 2.1422E-05 21856 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 85.146 81.859 58050000 0 0 2353300 2369300 2288900 3536600 0 0 0 7325600 9068800 7824200 1786200 1873100 0 0 0 0 0 0 2933300 6817600 4968200 4904900 10061 1488 9804 188014;188015;188016;188017;188018;188019;188020;188021;188022;188023;188024;188025;188026 116135;116136 116135 2 ILVLDGGMGTMIQSYR Unmodified 1752.8903 0.8902619 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.057 48.623 2 1.6974E-06 19417 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 103.88 83.01 75535000 6351100 7314400 5921500 0 0 0 5729700 5368100 6161800 2803300 0 2775900 4660400 3838600 4287600 0 0 0 7084800 6573500 6664200 0 0 0 10062 1083 9805 188027;188028;188029;188030;188031;188032;188033;188034;188035;188036;188037;188038;188039;188040 116137 116137 1 ILVLGVGNILLTDEAIGVR Unmodified 1964.167 0.16701233 1460 P37182 hybD Hydrogenase 2 maturation protease yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 55.231 53.743 3 9.2814E-05 26784 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 45.221 45.046 86694000 0 0 0 0 0 0 13344000 9705500 6990500 0 0 0 11944000 11154000 10327000 0 0 0 0 12151000 11077000 0 0 0 10063 1460 9806 188041;188042;188043;188044;188045;188046;188047;188048 116138;116139;116140;116141;116142;116143 116138 0 ILVPLTIEDAQIR Unmodified 1479.8661 0.86607929 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 48.385 47.028 2;3 5.0709E-09 22985 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 158.3 154 1539500000 342410000 311270000 324470000 1350700 1837500 1264900 119360000 108170000 109170000 0 2039600 4501200 18988000 19106000 17408000 0 0 0 50635000 55053000 52483000 0 0 0 10064 1194 9807 188049;188050;188051;188052;188053;188054;188055;188056;188057;188058;188059;188060;188061;188062;188063;188064;188065;188066;188067;188068;188069;188070;188071;188072;188073;188074;188075;188076 116144;116145;116146;116147;116148;116149;116150;116151;116152;116153;116154;116155;116156;116157;116158;116159;116160;116161;116162 116155 18 ILVTGGAGFIGSAVVR Unmodified 1515.8773 0.87731267 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 3 3 3 2 4 3 3 4 2 44.045 42.503 2;3 1.7234E-06 20813 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 103.75 78.897 248230000 7948300 7677000 6804100 866890 587000 0 28656000 25853000 23538000 0 0 0 14907000 24124000 21910000 0 0 0 34841000 27514000 23004000 0 0 0 10065 1496 9808 188077;188078;188079;188080;188081;188082;188083;188084;188085;188086;188087;188088;188089;188090;188091;188092;188093;188094;188095;188096;188097;188098;188099;188100;188101;188102;188103;188104;188105;188106;188107;188108;188109;188110;188111 116163;116164;116165;116166;116167;116168;116169;116170;116171;116172;116173;116174;116175;116176;116177;116178;116179;116180;116181 116168 12 ILVTGVASK Unmodified 886.54877 0.54876789 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 19.302 19.688 2 0.0006636 7422 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.44 68.804 12864000000 983300000 1002300000 835650000 6467300 7133100 6385300 1100700000 1151700000 1101300000 8466500 7941900 7727800 1012400000 871810000 902490000 4533300 3867900 3258200 1305300000 1272200000 1247800000 7176300 6417900 7296000 10066 869 9809 188112;188113;188114;188115;188116;188117;188118;188119;188120;188121;188122;188123;188124;188125;188126;188127;188128;188129;188130;188131;188132;188133;188134;188135;188136;188137;188138;188139;188140;188141;188142;188143;188144;188145 116182;116183;116184;116185;116186;116187;116188;116189;116190;116191;116192;116193;116194;116195;116196;116197;116198;116199;116200;116201;116202;116203;116204;116205 116193 22 ILVVDDDMR Unmodified 1074.5379 0.53794521 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.254 28.164 2 0.00011997 9409 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 133.55 87.83 984150000 0 0 0 14994000 16333000 15951000 113980000 108000000 106400000 0 0 0 95073000 83281000 0 44215000 36673000 42885000 108480000 102070000 95818000 0 0 0 10067 570 9810 188146;188147;188148;188149;188150;188151;188152;188153;188154;188155;188156;188157;188158;188159 116206;116207;116208;116209 116208 4 ILVVEDEAPIR Unmodified 1252.7027 0.70270235 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.241 31.748 2 4.9836E-08 14358 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 176.79 164.75 3210400000 0 0 0 1288100 906890 1165100 323100000 283170000 255270000 6894600 6972100 7284600 300070000 290480000 268780000 10704000 8363400 9784400 463190000 499880000 446840000 9913800 8777800 7542000 10068 946 9811 188160;188161;188162;188163;188164;188165;188166;188167;188168;188169;188170;188171;188172;188173;188174;188175;188176;188177;188178;188179;188180 116210;116211;116212;116213;116214;116215;116216;116217;116218 116218 9 ILVWNIYK Unmodified 1047.6117 0.6117025 460 P0A8U2 yafD UPF0294 protein YafD yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 42.927 41.217 2 0.0030004 19914 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.793 92.425 34847000 8522500 7414700 9173100 465410 0 0 1941200 2620600 1885600 0 0 0 1215700 0 0 0 0 0 1608500 0 0 0 0 0 10069 460 9812 188181;188182;188183;188184;188185;188186;188187;188188;188189 116219;116220 116220 2 ILVYTVNKPQR Unmodified 1329.7769 0.77687035 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 1 1 2 2 2 2 2 2 18.293 18.822 2;3 2.9516E-10 7064 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 194.2 150.39 497340000 13996000 7928700 2697100 0 0 0 30268000 34931000 20409000 1277800 996360 0 53301000 38873000 29883000 0 0 0 73863000 93189000 95728000 0 0 0 10070 1065 9813 188190;188191;188192;188193;188194;188195;188196;188197;188198;188199;188200;188201;188202;188203;188204;188205;188206;188207;188208;188209;188210;188211;188212 116221;116222;116223;116224;116225;116226;116227;116228;116229;116230;116231;116232;116233;116234 116223 13 ILYEQMK Unmodified 923.47864 0.47863942 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 20.02 20.444 2 0.015892 8048 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.297 49.993 99631000 0 0 0 0 0 0 10592000 11193000 13026000 0 0 0 9106200 9201300 9272700 0 0 0 9785100 13953000 13503000 0 0 0 10071 193 9814 188213;188214;188215;188216;188217;188218;188219;188220;188221 116235;116236;116237;116238;116239 116236 5 ILYISCNPETLCK Unmodified 1609.7844 0.78439985 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 35.967 34.384 2 3.228E-06 16947 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 155.15 150.26 221920000 26812000 25624000 15964000 0 0 0 20030000 17354000 18628000 0 0 0 0 17282000 17907000 0 0 0 31701000 0 30615000 0 0 0 10072 1203 9815 188222;188223;188224;188225;188226;188227;188228;188229;188230;188231 116240;116241;116242;116243;116244 116240 3 ILYQQQQTLPSADELENMTNR Unmodified 2491.2013 0.20130194 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 43.175 41.442 3 7.4123E-08 14691 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 110.6 109.42 68089000 0 0 0 14851000 15029000 12655000 0 0 0 0 0 0 0 0 0 0 0 0 0 2454400 4347200 6781400 5366100 6604200 10073 1899 9816 188232;188233;188234;188235;188236;188237;188238;188239 116245;116246;116247;116248 116246 4 IMAGIDKDIEGEAR Unmodified 1516.7555 0.75554256 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 2 2 2 24.972 23.989 2;3 3.0801E-19 10208 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 207.29 188.98 1372900000 159250000 140240000 137780000 0 0 0 105660000 103870000 90072000 0 0 0 91289000 87857000 92478000 0 0 0 127540000 112530000 124320000 0 0 0 10074 561 9817 188240;188241;188242;188243;188244;188245;188246;188247;188248;188249;188250;188251;188252;188253;188254;188255;188256;188257;188258;188259;188260;188261;188262;188263;188264 116249;116250;116251;116252;116253;116254;116255;116256;116257;116258;116259;116260;116261;116262;116263;116264;116265;116266;116267;116268;116269;116270 116268 22 IMAGIDKDIEGEARPQPDIK Unmodified 2195.1256 0.1256178 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 27.42 26.215 3;4 5.3971E-18 12120 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159.26 146.42 2802700000 354560000 331120000 303940000 13571000 15109000 6913900 286920000 260420000 255430000 16830000 17665000 14194000 200160000 219410000 193340000 7681600 3507400 3952900 104490000 102830000 90635000 0 0 0 10075 561 9818 188265;188266;188267;188268;188269;188270;188271;188272;188273;188274;188275;188276;188277;188278;188279;188280;188281;188282;188283;188284;188285;188286;188287;188288;188289;188290;188291;188292;188293;188294;188295;188296;188297;188298;188299;188300 116271;116272;116273;116274;116275;116276;116277;116278;116279;116280;116281;116282;116283;116284;116285;116286;116287;116288;116289;116290;116291;116292;116293;116294;116295;116296;116297 116278 27 IMAHLSR Unmodified 826.44834 0.44834234 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.143 12.763 2 0.016718 2943 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 80.462 69.348 224420000 20962000 21524000 20881000 0 0 0 19752000 21664000 19398000 0 0 0 20323000 0 19604000 8207200 2118200 3529900 25596000 20859000 0 0 0 0 10076 37 9819 188301;188302;188303;188304;188305;188306;188307;188308;188309;188310;188311;188312;188313 116298;116299;116300 116298 3 IMATAAK Unmodified 704.3891 0.38909613 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 2 2 2 2 1 1 2 2 1 12.718 13.526 2 0.011149 2992 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.086 68.32 5248800000 1106400000 1077700000 1051800000 4116700 0 3672900 188700000 181350000 180030000 0 0 0 160090000 147300000 145980000 3785400 0 0 308950000 344230000 334960000 0 0 9777500 10077 1264 9820 188314;188315;188316;188317;188318;188319;188320;188321;188322;188323;188324;188325;188326;188327;188328;188329;188330;188331;188332;188333;188334;188335;188336 116301;116302;116303;116304;116305;116306;116307;116308;116309;116310;116311;116312;116313 116306 13 IMATAAK Oxidation (M) 720.38401 0.38401075 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 9.6928 10.561 2 0.17026 2480 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 47.743 34.535 80064000 78705000 0 0 0 0 0 0 0 0 0 0 0 365780 326150 666910 0 0 0 0 0 0 0 0 0 10078 1264 9820 188337;188338;188339;188340 116314 116314 1 IMDELSVISCDVYR Unmodified 1698.7957 0.79569281 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.94 46.525 2;3 9.9368E-20 22498 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 215.5 210.61 1191000000 187800000 169370000 146950000 0 0 0 83328000 87419000 84246000 0 0 0 64616000 62846000 69224000 0 0 0 78872000 77695000 78651000 0 0 0 10079 43 9821 188341;188342;188343;188344;188345;188346;188347;188348;188349;188350;188351;188352;188353;188354;188355;188356;188357;188358;188359;188360;188361;188362;188363;188364 116315;116316;116317;116318;116319;116320;116321;116322;116323;116324;116325;116326;116327;116328;116329;116330;116331;116332;116333;116334;116335 116323 19 IMELIAHR Unmodified 981.54297 0.54297101 1715 P67826 cutC Copper homeostasis protein CutC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.648 21.731 2 0.001177 8837 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.04 96.26 105300000 13481000 9146200 9193300 0 0 0 9605500 0 10045000 0 0 0 9787500 9543300 9039200 0 0 0 9673200 8992000 6797400 0 0 0 10080 1715 9822 188365;188366;188367;188368;188369;188370;188371;188372;188373;188374;188375 116336;116337 116336 2 IMENALTANNNK Unmodified 1331.6503 0.65034921 1470 P37387 xylF D-xylose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 18.079 18.563 2 8.1684E-17 6865 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 209.73 194.14 116770000 36849000 40168000 35096000 0 0 0 0 0 0 0 0 1378000 0 0 1580100 0 0 0 0 0 0 0 0 1697600 10081 1470 9823 188376;188377;188378;188379;188380;188381 116338;116339;116340 116340 3 IMEQLVA Unmodified 802.42588 0.42587556 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.078 34.499 2 0.15079 16579 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 44.611 43.697 54779000 5576700 4360000 0 842430 0 684520 4233000 4307000 4037000 0 0 0 5056600 4062500 4312000 0 0 0 4503200 6899300 5904900 0 0 0 10082 849 9824 188382;188383;188384;188385;188386;188387;188388;188389;188390;188391;188392;188393;188394 116341 116341 1 IMEVCGGHTHAIFK Unmodified 1598.7698 0.76975283 1239 P24192 hypD Hydrogenase isoenzymes formation protein HypD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 2 2 1 2 2 2 1 1 2 2 2 1 1 18.629 18.969 3;4 0.1478 5914 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 21.353 19.341 144440000 0 0 1552600 0 0 0 17679000 22133000 8882000 4899900 6465800 5464800 8853800 11907000 17466000 0 0 0 13472000 19388000 5602700 0 0 673360 10083 1239 9825 188395;188396;188397;188398;188399;188400;188401;188402;188403;188404;188405;188406;188407;188408;188409;188410;188411;188412;188413;188414;188415;188416 116342;116343 116342 2 IMFPMIISVEEVR Unmodified 1562.8201 0.82005707 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 2 2 2 1 2 1 1 2 2 2 54.802 53.333 2;3 3.5495E-07 25158 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 114.72 109.83 1808500000 0 0 8392300 0 0 0 212420000 216160000 225810000 0 0 1768400 255700000 19110000 18041000 0 0 0 306300000 278830000 266000000 0 0 0 10084 192 9826 188417;188418;188419;188420;188421;188422;188423;188424;188425;188426;188427;188428;188429;188430;188431;188432;188433;188434 116344;116345;116346 116346 2 IMFPMIISVEEVR Oxidation (M) 1578.815 0.81497169 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 1 0 By MS/MS 1 52.544 51.29 2 0.017849 24899 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 54.776 39.51 6674700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6674700 0 0 0 0 0 10085 192 9826 188435 116347 116347 57 0 IMGDSEGVYANELR Unmodified 1552.7192 0.71915705 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.691 29.335 2 2.0101E-06 13798 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.19 117.97 93329000 13326000 10903000 12200000 0 0 0 6019700 7153800 6259100 0 0 0 6712300 4537600 6293400 0 0 0 7210800 4603900 8109200 0 0 0 10086 1353 9827 188436;188437;188438;188439;188440;188441;188442;188443;188444;188445;188446;188447 116348;116349 116348 2 IMGGADVILVPSR Unmodified 1326.733 0.73295662 282 P0A6U8 glgA Glycogen synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 20.606 20.908 3 0.11181 8297 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 27.862 14.458 205660000 0 0 0 0 0 0 25961000 27807000 24259000 0 0 0 0 26025000 0 0 0 0 30887000 35170000 35551000 0 0 0 10087 282 9828 188448;188449;188450;188451;188452;188453;188454 116350;116351;116352;116353;116354 116352 5 IMIDLDGTENK Oxidation (M) 1263.6017 0.60166768 270 P0A6P9 eno Enolase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 2 2 2 2 2 2 3 31.002 29.61 2 2.3829E-10 12810 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 160.59 132.75 846150000 1843200 0 0 0 0 326800 208390000 210080000 188020000 0 0 0 99208000 10503000 95748000 0 0 0 11313000 9518300 11198000 0 0 0 10088 270 9829 188455;188456;188457;188458;188459;188460;188461;188462;188463;188464;188465;188466;188467;188468;188469;188470;188471;188472;188473;188474;188475;188476;188477;188478 116355;116356;116357;116358;116359;116360;116361;116362;116363;116364;116365;116366;116367;116368;116369;116370;116371;116372 116364 126 18 IMIDLDGTENK Unmodified 1247.6068 0.60675306 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 1 1 2 1 1 1 32.688 31.333 2 1.0528E-07 14791 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 200.05 188.2 26098000000 1334800000 1218600000 1159400000 10766000 10257000 9537200 3433700000 3221200000 3194200000 0 0 0 2110000000 1879900000 1889000000 0 0 0 2194500000 2249200000 2182400000 0 0 0 10089 270 9829 188479;188480;188481;188482;188483;188484;188485;188486;188487;188488;188489;188490;188491;188492;188493;188494;188495;188496 116373;116374;116375;116376;116377;116378;116379;116380;116381;116382;116383;116384;116385;116386;116387;116388;116389;116390;116391;116392;116393;116394;116395;116396;116397;116398;116399;116400;116401;116402;116403;116404;116405;116406;116407;116408 116379 36 IMLCVSDTIDK Unmodified 1293.6309 0.63085932 947 P0AFJ7 pitA Low-affinity inorganic phosphate transporter 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.669 32.967 2 0.002102 12804 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 75.387 70.775 100310000 1492500 3672900 0 0 0 1017300 7861000 9106500 0 3578400 4818100 2729300 7587500 8506400 7327000 0 0 0 12703000 13143000 11208000 2794400 0 2766300 10090 947 9830 188497;188498;188499;188500;188501;188502;188503;188504;188505;188506;188507;188508;188509;188510;188511;188512;188513 116409;116410;116411;116412;116413;116414;116415;116416;116417;116418;116419;116420;116421;116422 116410 6 IMLDGEPYAVEASEFVK Unmodified 1896.9179 0.91791644 265 P0A6N4 efp Elongation factor P yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 49.628 48.267 2 9.2041E-11 23527 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.69 134.34 292910000 23560000 23510000 23295000 0 0 0 0 18721000 21460000 0 0 0 36465000 30146000 27400000 0 0 0 33288000 25003000 30058000 0 0 0 10091 265 9831 188514;188515;188516;188517;188518;188519;188520;188521;188522;188523;188524 116423;116424;116425;116426;116427;116428;116429;116430;116431;116432 116424 10 IMLDNEDITHVPAENR Unmodified 1865.8942 0.89416131 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.933 28.564 3 2.5582E-05 13488 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 85.988 82.268 355520000 12386000 16039000 12015000 3189400 3317200 5109200 19002000 20392000 18383000 11254000 6985100 9292500 30065000 27700000 28328000 4593100 2637800 2471300 37229000 33024000 33379000 4728700 6155500 7844000 10092 1754 9832 188525;188526;188527;188528;188529;188530;188531;188532;188533;188534;188535;188536;188537;188538;188539;188540;188541;188542;188543;188544;188545;188546;188547;188548 116433;116434;116435;116436;116437;116438;116439;116440;116441;116442;116443;116444 116437 12 IMLLCSPQNPTGK Unmodified 1457.7371 0.73705572 1205 P23256 malY Protein MalY;Cystathionine beta-lyase MalY;Maltose regulon modulator yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 32.45 31.118 2 4.6777E-07 13989 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 180.67 180.19 120870000 0 10934000 8723400 0 0 0 13991000 14339000 0 0 0 0 15614000 14479000 12223000 0 0 0 11203000 9501900 9861800 0 0 0 10093 1205 9833 188549;188550;188551;188552;188553;188554;188555;188556;188557;188558 116445;116446;116447;116448;116449;116450;116451 116451 6 IMLVAQK Unmodified 801.47825 0.47824549 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 19.818 20.027 1;2 0.0013909 6298 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 130.84 107.04 2018700000 79763000 97191000 73397000 0 4283800 4240200 110820000 117750000 114240000 20870000 17395000 20640000 122360000 93162000 92009000 318130000 171520000 180170000 120310000 132590000 111740000 0 8835100 7265400 10094 536 9834 188559;188560;188561;188562;188563;188564;188565;188566;188567;188568;188569;188570;188571;188572;188573;188574;188575;188576;188577;188578;188579;188580;188581;188582;188583;188584;188585;188586;188587;188588;188589;188590;188591;188592;188593;188594 116452;116453;116454;116455;116456;116457;116458;116459;116460;116461;116462;116463;116464;116465;116466;116467;116468;116469;116470;116471;116472 116457 17 IMLVAQK Oxidation (M) 817.47316 0.47316011 536 P0A9M0 lon Lon protease yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 16.373 16.959 2 0.099679 4761 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 53.185 22.444 29667000 3414200 4204200 0 0 0 0 4000900 0 5516200 0 0 0 0 0 0 2028300 0 1227100 2551700 3299300 3425200 0 0 0 10095 536 9834 188595;188596;188597;188598;188599;188600;188601;188602;188603 116473 116473 0 IMMEVIR Oxidation (M) 906.46669 0.46669452 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.902 23.913 2 0.013255 10056 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 86.838 82.013 186760000 6901300 7083300 6587300 0 0 0 28526000 35163000 30039000 0 0 0 12013000 12025000 9860100 0 0 0 14739000 12157000 11670000 0 0 0 10096 257 9835 188604;188605;188606;188607;188608;188609;188610;188611;188612;188613;188614;188615 116474;116475;116476;116477;116478;116479;116480 116480 107 7 IMMEVIR Unmodified 890.47178 0.4717799 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.094 27.838 2 0.00023343 12313 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 163.34 137.23 3181100000 122400000 137230000 142960000 0 0 0 407590000 402250000 400530000 0 0 0 276710000 277930000 285080000 0 0 0 229760000 262200000 236410000 0 0 0 10097 257 9835 188616;188617;188618;188619;188620;188621;188622;188623;188624;188625;188626;188627 116481;116482;116483;116484;116485;116486;116487;116488;116489;116490 116489 10 IMMGAER Unmodified 806.37788 0.37787951 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.279 14.909 2 0.0020767 4015 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 118.69 94.5 714920000 31041000 0 22066000 9175000 10179000 12449000 58102000 56520000 55405000 19658000 27613000 24639000 46206000 52254000 52278000 4760500 4447200 4859200 61253000 52154000 58280000 16019000 19969000 15594000 10098 595 9836 188628;188629;188630;188631;188632;188633;188634;188635;188636;188637;188638;188639;188640;188641;188642;188643;188644;188645;188646;188647;188648;188649;188650;188651;188652 116491;116492;116493;116494;116495 116491 5 IMMPQTWK Unmodified 1033.5089 0.50889369 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.167 29.76 2 0.00098544 13431 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.78 107.22 840670000 34637000 0 33686000 6878500 8952000 8621500 50969000 51397000 56593000 26162000 22212000 23430000 54112000 57480000 59240000 7118400 4940200 4862300 97182000 82806000 83019000 18861000 20961000 26552000 10099 1426 9837 188653;188654;188655;188656;188657;188658;188659;188660;188661;188662;188663;188664;188665;188666;188667;188668;188669;188670;188671;188672;188673;188674;188675 116496;116497;116498;116499;116500;116501;116502;116503;116504;116505;116506;116507;116508;116509;116510 116509 15 IMNDENFQHGGTNIHYLEK Unmodified 2259.0379 0.037865429 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 3 3 2 2 2 2 3 3 3 1 1 3 3 3 1 1 2 23.426 22.621 2;3;4 1.0805E-18 10048 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.81 144.85 5620300000 380850000 397680000 335500000 4647100 5319200 6198300 338060000 346040000 346960000 10319000 7239200 6672000 525340000 479400000 469360000 1908700 0 3075400 588820000 667670000 679330000 5136900 6233500 8554500 10100 1236 9838 188676;188677;188678;188679;188680;188681;188682;188683;188684;188685;188686;188687;188688;188689;188690;188691;188692;188693;188694;188695;188696;188697;188698;188699;188700;188701;188702;188703;188704;188705;188706;188707;188708;188709;188710;188711;188712;188713;188714;188715;188716;188717;188718;188719;188720;188721;188722;188723;188724;188725;188726;188727;188728 116511;116512;116513;116514;116515;116516;116517;116518;116519;116520;116521;116522;116523;116524;116525;116526;116527;116528;116529;116530;116531;116532;116533;116534;116535 116512 25 IMNIPGSEVTGMR Unmodified 1403.6901 0.69010553 1157 P19319 narZ Respiratory nitrate reductase 2 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 35.314 33.48 2 0.00091938 13019 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 70.1 64.759 8757600 0 0 0 2346500 0 1882900 0 0 0 0 0 4528100 0 0 0 0 0 0 0 0 0 0 0 0 10101 1157 9839 188729;188730;188731;188732 116536;116537;116538;116539 116536 4 IMNVLGEPVDMK Unmodified 1344.6781 0.67814386 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.077 37.466 2 3.401E-06 14764 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 157.24 146.09 7110500000 250150000 198300000 230800000 9692400 8845000 8703800 582820000 604350000 571360000 57960000 56165000 57024000 732810000 597990000 622480000 22991000 12874000 11223000 788490000 723490000 804360000 54646000 52181000 50822000 10102 646 9840 188733;188734;188735;188736;188737;188738;188739;188740;188741;188742;188743;188744;188745;188746;188747;188748;188749;188750;188751;188752;188753;188754;188755;188756 116540;116541;116542;116543;116544;116545;116546;116547;116548;116549;116550;116551;116552;116553;116554;116555;116556;116557;116558;116559;116560;116561;116562 116543 19 IMNVLGEPVDMK Oxidation (M) 1360.6731 0.67305848 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 2 1 1 1 1 2 2 3 1 1 1 33.174 31.599 2 0.0019996 15061 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 69.721 58.891 294450000 2730600 0 3657800 0 0 0 20995000 16188000 12896000 4082100 0 0 12193000 13250000 13108000 0 0 0 60934000 63155000 67225000 1516800 1024600 1491000 10103 646 9840 188757;188758;188759;188760;188761;188762;188763;188764;188765;188766;188767;188768;188769;188770;188771;188772;188773;188774;188775;188776;188777 116563;116564;116565;116566;116567;116568;116569;116570;116571;116572 116567 351;352 10 IMNVLGEPVDMKGEIGEEER Unmodified 2244.0766 0.076618701 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 3 2 3 38.876 37.222 2;3 3.0297E-18 12935 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 165.3 163.03 1807800000 9158100 0 5986900 49439000 58386000 56133000 17549000 0 15016000 222950000 242930000 264780000 15927000 13639000 15106000 95825000 48250000 65252000 22355000 25081000 24572000 173380000 170530000 195510000 10104 646 9841 188778;188779;188780;188781;188782;188783;188784;188785;188786;188787;188788;188789;188790;188791;188792;188793;188794;188795;188796;188797;188798;188799;188800;188801;188802;188803;188804;188805;188806;188807;188808;188809;188810;188811;188812 116573;116574;116575;116576;116577;116578;116579;116580;116581;116582;116583;116584;116585;116586;116587;116588;116589;116590;116591;116592;116593;116594;116595 116575 23 IMNVLGEPVDMKGEIGEEER Oxidation (M) 2260.0715 0.071533323 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 1 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 33.198 31.638 3 9.3717E-08 14107 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 109.89 109.16 157340000 0 0 0 2301100 0 2113200 12276000 14350000 10151000 16050000 5762600 17967000 15567000 14912000 16813000 2638400 2055800 3785800 5543900 4771100 0 10284000 0 0 10105 646 9841 188813;188814;188815;188816;188817;188818;188819;188820;188821;188822;188823;188824;188825;188826;188827;188828;188829;188830;188831;188832 116596;116597;116598;116599;116600;116601;116602;116603 116603 351;352 8 IMPMLQHR Unmodified 1024.531 0.53102611 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.868 18.5 2 0.00099119 6728 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.54 110.18 127250000 15590000 19577000 14531000 0 0 0 9194800 8414800 10130000 0 0 0 9193500 6655700 7896500 0 0 0 8240600 10441000 7388200 0 0 0 10106 1233 9842 188833;188834;188835;188836;188837;188838;188839;188840;188841;188842;188843;188844 116604;116605;116606 116606 3 IMQAIIGGIIAGFGAR Unmodified 1586.8967 0.89666791 1357 P31064 yedE UPF0394 inner membrane protein YedE yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.929 53.457 2 0.038028 26543 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 49.5 42.101 96963000 5043500 0 4770800 0 1274400 0 7090400 5460200 5717500 5356300 3734800 0 9682600 10699000 9075100 0 0 0 8879500 7044800 11372000 0 0 1762400 10107 1357 9843 188845;188846;188847;188848;188849;188850;188851;188852;188853;188854;188855;188856;188857;188858;188859 116607;116608;116609;116610;116611 116607 0 IMQLILK Unmodified 857.54085 0.54084574 1657 P63204 gadE Transcriptional regulator GadE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.419 32.995 2 0.0074779 11557 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 91.14 53.495 46914000 0 0 0 0 0 0 3165800 0 2838400 5600300 5541300 6937600 0 0 0 9759000 4953500 8117700 0 0 0 0 0 0 10108 1657 9844 188860;188861;188862;188863;188864;188865;188866;188867 116612;116613;116614;116615;116616;116617 116612 6 IMRGEGDAEAAK Unmodified 1246.5976 0.59758535 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 1 By matching By matching By MS/MS By MS/MS 1 1 1 1 10.822 11.477 2 0.0034581 2268 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 74.849 43.619 17541000 0 0 0 0 3530500 3997200 0 0 0 0 5563300 4449700 0 0 0 0 0 0 0 0 0 0 0 0 10109 648 9845 188868;188869;188870;188871 116618;116619 116619 0 IMTGAPVPEGCEAVVMQEQTEQMDNGVR Unmodified 3075.377 0.37697618 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.349 40.65 3 2.5529E-11 19856 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128.01 122.35 139730000 17070000 14694000 18756000 0 0 0 7686600 8709900 9267800 0 0 0 7646900 12257000 11603000 0 0 0 10390000 10940000 10705000 0 0 0 10110 1076 9846 188872;188873;188874;188875;188876;188877;188878;188879;188880;188881;188882;188883 116620 116620 1 IMTMAVEDHQPPLVR Unmodified 1735.8749 0.87494619 268 P0A6P5 der GTPase Der yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.766 28.386 3 1.6095E-09 13233 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.16 119.74 128460000 24542000 29864000 20116000 0 929650 0 6521000 4853700 5553800 0 0 0 0 6022700 6682000 0 0 0 7404100 8929500 7038200 0 0 0 10111 268 9847 188884;188885;188886;188887;188888;188889;188890;188891;188892;188893;188894;188895 116621;116622;116623 116621 3 IMTPEQALSAGVDYMVIGR Unmodified 2050.0227 0.022732637 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.9 53.494 2 1.0968E-17 26391 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 218.5 205.52 129080000 49525000 48425000 31125000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10112 181 9848 188896;188897;188898 116624;116625;116626 116625 3 IMTPEQALSAGVDYMVIGRPVTQSVDPAQTLK Unmodified 3414.7527 0.75271237 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 54.204 52.812 3 3.1639E-13 25746 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 115.67 111.31 193260000 30898000 25377000 24766000 0 0 0 0 0 0 0 0 0 17400000 18243000 14182000 0 0 0 20603000 20760000 21027000 0 0 0 10113 181 9849 188899;188900;188901;188902;188903;188904;188905;188906;188907 116627 116627 1 IMTSYVVGQALK Unmodified 1308.7112 0.71115855 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.863 32.38 2 1.3518E-14 15869 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.44 154.06 102470000 0 0 0 8010300 7373600 7735300 0 0 0 18713000 14524000 17182000 0 0 0 5996800 3332200 3248600 0 0 0 4991100 6449100 4910000 10114 189 9850 188908;188909;188910;188911;188912;188913;188914;188915;188916;188917;188918;188919;188920;188921 116628;116629;116630;116631;116632;116633;116634;116635;116636;116637;116638 116631 11 IMVCLSGGK Unmodified 963.48816 0.48815825 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.367 22.646 2 0.0056668 9793 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 73.665 65.993 278790000 17193000 18219000 18164000 0 0 0 17869000 15165000 14322000 0 0 0 32295000 25312000 23437000 0 0 0 29654000 32634000 34524000 0 0 0 10115 1812 9851 188922;188923;188924;188925;188926;188927;188928;188929;188930;188931;188932;188933 116639;116640;116641;116642;116643;116644;116645 116639 2 IMVLGGGPNR Unmodified 1012.5488 0.54878467 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.13 23.272 2 3.4471E-05 8061 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 143 104.21 1193800000 258770000 235930000 246870000 1676100 1783700 2331400 5486000 4680200 3637300 895040 0 0 24119000 27120000 32379000 2085800 1831000 1535200 114120000 103780000 109210000 4604800 4936300 6044000 10116 65 9852 188934;188935;188936;188937;188938;188939;188940;188941;188942;188943;188944;188945;188946;188947;188948;188949;188950;188951;188952;188953;188954;188955 116646;116647;116648;116649;116650;116651;116652;116653;116654;116655 116648 9 IMVLGGGPNR Oxidation (M) 1028.5437 0.54369929 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 19.12 19.764 2 0.00078176 7532 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 91.626 62.477 73415000 30075000 9226600 25253000 0 0 0 0 0 0 0 0 0 0 0 2179300 0 0 0 0 5056900 1624200 0 0 0 10117 65 9852 188956;188957;188958;188959;188960;188961 116656;116657 116657 28 2 IMVSGLVK Unmodified 845.50446 0.50446024 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 26.434 25.355 1;2 0.0026864 11676 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.418 35.704 1396900000 152560000 137790000 150280000 0 384350 607820 135370000 142540000 136450000 0 0 0 81203000 90125000 71391000 0 0 0 106920000 90442000 100820000 0 0 0 10118 1100 9853 188962;188963;188964;188965;188966;188967;188968;188969;188970;188971;188972;188973;188974;188975;188976;188977;188978;188979;188980;188981;188982;188983;188984;188985;188986;188987 116658;116659;116660;116661;116662;116663;116664;116665;116666;116667;116668;116669;116670 116660 12 IMWVMYEHPETHFEELALR Oxidation (M) 2446.145 0.14497304 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 5 4 5 3 5 4 3 4 4 3 3 3 3 2 2 1 3 2 2 2 43.778 42.028 3;4 1.1875E-06 21994 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.661 88.507 392000000 47579000 27896000 27707000 11020000 16993000 12431000 39806000 29114000 43320000 19556000 15890000 9727700 23380000 11776000 12538000 0 0 0 0 7703900 11504000 6482100 9362200 8216100 10119 548 9854 188988;188989;188990;188991;188992;188993;188994;188995;188996;188997;188998;188999;189000;189001;189002;189003;189004;189005;189006;189007;189008;189009;189010;189011;189012;189013;189014;189015;189016;189017;189018;189019;189020;189021;189022;189023;189024;189025;189026;189027;189028;189029;189030;189031;189032;189033;189034;189035;189036;189037;189038;189039;189040;189041;189042;189043;189044;189045;189046;189047;189048;189049;189050 116671;116672;116673;116674;116675;116676;116677;116678;116679;116680;116681;116682;116683;116684;116685;116686;116687 116683 331;332 15 IMWVMYEHPETHFEELALR Unmodified 2430.1501 0.15005842 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 3 3 3 3 2 2 2 3 3 3 3 3 3 2 3 2 46.439 44.84 2;3;4 2.5395E-29 22348 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 238.63 231.91 8770400000 847270000 763470000 701940000 166910000 175380000 184670000 909440000 946100000 872590000 147660000 144790000 132530000 415540000 360640000 371880000 0 0 0 408730000 416990000 323610000 147080000 160150000 173000000 10120 548 9854 189051;189052;189053;189054;189055;189056;189057;189058;189059;189060;189061;189062;189063;189064;189065;189066;189067;189068;189069;189070;189071;189072;189073;189074;189075;189076;189077;189078;189079;189080;189081;189082;189083;189084;189085;189086;189087;189088;189089;189090;189091;189092;189093;189094;189095;189096;189097;189098;189099;189100;189101;189102;189103;189104;189105;189106;189107 116688;116689;116690;116691;116692;116693;116694;116695;116696;116697;116698;116699;116700;116701;116702;116703;116704;116705;116706;116707;116708;116709;116710;116711;116712;116713;116714;116715;116716;116717;116718;116719;116720;116721;116722;116723;116724;116725;116726;116727;116728 116695 40 INAEDPNTFLPSPGK Unmodified 1598.794 0.79403655 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.037 34.277 2 2.3607E-11 16407 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 162.31 152.89 1846200000 104850000 129220000 109950000 2685000 2247500 2712600 145820000 132600000 134880000 4035300 4034500 3859300 156570000 149890000 141250000 0 0 0 187600000 208330000 214720000 0 6291300 4680800 10121 1236 9855 189108;189109;189110;189111;189112;189113;189114;189115;189116;189117;189118;189119;189120;189121;189122;189123;189124;189125;189126;189127 116729;116730;116731;116732;116733;116734;116735;116736;116737;116738;116739;116740;116741;116742;116743;116744;116745 116741 16 INAFKPTADRPFVLGLPTGGTPMTTYK Unmodified 2892.5208 0.52078559 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 2 1 2 2 2 2 2 2 42.587 40.925 3;4 1.1023E-22 20423 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 170.82 168.29 1349300000 232980000 205770000 59874000 0 0 0 39410000 181250000 31649000 0 0 0 77470000 74739000 92688000 0 0 0 123470000 113070000 116930000 0 0 0 10122 313 9856 189128;189129;189130;189131;189132;189133;189134;189135;189136;189137;189138;189139;189140;189141;189142;189143;189144;189145;189146;189147;189148 116746;116747;116748;116749;116750;116751;116752;116753;116754;116755;116756;116757;116758;116759 116748 14 INAHYFDK Unmodified 1006.4872 0.48723027 1532 P39371 nanM N-acetylneuraminate epimerase yes yes 0 0 0 By MS/MS By matching 1 1 14.743 15.574 2 0.064048 5142 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 56.81 42.035 20315000 0 0 19439000 0 0 0 0 0 0 0 0 0 0 0 876760 0 0 0 0 0 0 0 0 0 10123 1532 9857 189149;189150 116760 116760 1 INALAPVSGQAK Unmodified 1167.6612 0.66117189 1592 P50457 puuE 4-aminobutyrate aminotransferase PuuE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 22.607 22.643 2 4.5089E-05 8329 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.15 91.111 418570000 42873000 44387000 38168000 0 0 0 0 0 0 0 0 0 0 293140000 0 0 0 0 0 0 0 0 0 0 10124 1592 9858 189151;189152;189153;189154 116761;116762;116763;116764 116763 4 INALETVTIASK Unmodified 1258.7133 0.71326704 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.796 31.399 2 1.251E-05 10512 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 128.17 121.55 4532100000 694260000 595760000 579060000 31813000 30912000 28906000 0 0 0 22089000 25663000 25093000 296400000 335980000 317300000 36227000 28187000 22244000 429480000 459150000 439500000 46205000 45352000 42520000 10125 364 9859 189155;189156;189157;189158;189159;189160;189161;189162;189163;189164;189165;189166;189167;189168;189169;189170;189171;189172;189173;189174;189175 116765;116766;116767;116768;116769;116770;116771;116772;116773;116774;116775;116776;116777;116778;116779;116780;116781;116782;116783 116767 18 INAMLQDYELQR Unmodified 1492.7344 0.73441319 970 P0AFX7 rseA Anti-sigma-E factor RseA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 35.371 33.811 2 0.00034689 16026 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.17 73.34 88960000 5042100 5068400 5252800 0 0 529970 28619000 25417000 2897500 0 913590 0 3277100 2882600 3050400 0 0 0 0 2903200 3106000 0 0 0 10126 970 9860 189176;189177;189178;189179;189180;189181;189182;189183;189184;189185;189186;189187;189188 116784;116785;116786 116785 0 INCFEDPAFTADYHDPEK Unmodified 2167.9157 0.91568461 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 32.896 31.657 3 1.3859E-09 14959 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 112.28 112.28 159070000 59582000 51217000 48272000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10127 1888 9861 189189;189190;189191 116787;116788;116789 116788 3 INCFEDPAFTADYHDPEKR Unmodified 2324.0168 0.016795636 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 28.367 27.362 3 5.5634E-11 12594 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.47 133.47 354340000 132730000 124780000 96830000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10128 1888 9862 189192;189193;189194 116790;116791;116792 116790 3 INDKHIEVIVR Unmodified 1334.767 0.76703394 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 4 5 6 5 5 4 3 4 16.569 16.73 1;2;3 1.4467E-19 4500 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 284.69 263.81 19461000000 0 0 0 9397600 12384000 13326000 0 0 0 1172800000 962250000 1132700000 0 0 0 4847300000 3041500000 3087800000 0 0 0 1587100000 1760600000 1834000000 10129 458 9863 189195;189196;189197;189198;189199;189200;189201;189202;189203;189204;189205;189206;189207;189208;189209;189210;189211;189212;189213;189214;189215;189216;189217;189218;189219;189220;189221;189222;189223;189224;189225;189226;189227;189228;189229;189230;189231;189232;189233;189234;189235;189236;189237;189238;189239;189240 116793;116794;116795;116796;116797;116798;116799;116800;116801;116802;116803;116804;116805;116806;116807;116808;116809;116810;116811;116812;116813;116814;116815;116816;116817;116818;116819;116820;116821;116822;116823;116824 116794 32 INDNQVIEGAESR Unmodified 1443.6954 0.69538514 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 20.795 21.109 2;3 3.5024E-31 8436 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 252.97 241.1 4413800000 507760000 470410000 444420000 0 3450900 3296100 318520000 300070000 284380000 1294500 0 0 304860000 303560000 286780000 0 0 0 383900000 407750000 393380000 0 0 0 10130 512 9864 189241;189242;189243;189244;189245;189246;189247;189248;189249;189250;189251;189252;189253;189254;189255;189256;189257;189258;189259;189260;189261;189262;189263;189264;189265;189266;189267;189268 116825;116826;116827;116828;116829;116830;116831;116832;116833;116834;116835;116836;116837;116838;116839;116840;116841;116842;116843;116844 116829 19 INDPQVADDILSR Unmodified 1454.7365 0.73652168 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 34.253 32.86 2 1.1423E-08 15507 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.74 148.78 162910000 47992000 45026000 38686000 0 0 0 6650600 0 0 0 0 0 3813900 4267300 0 0 0 0 5500200 5303000 5667700 0 0 0 10131 1554 9865 189269;189270;189271;189272;189273;189274;189275;189276;189277 116845;116846;116847;116848;116849 116849 2 INDWASIYGVVGVGYGK Unmodified 1796.9097 0.90973501 483 P0A917 ompX Outer membrane protein X yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.615 50.559 2 9.9454E-14 20255 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 159.64 156.14 98065000 0 0 0 6427900 5968100 4662200 0 0 0 15285000 15585000 17578000 0 2046000 0 3409300 1727100 1818700 0 0 2668900 5878900 8392700 6616700 10132 483 9866 189278;189279;189280;189281;189282;189283;189284;189285;189286;189287;189288;189289;189290;189291 116850;116851;116852;116853;116854;116855 116851 6 INECVNAADLQLLAR Unmodified 1698.8723 0.87230365 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.212 40.513 2 7.6868E-15 19644 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.23 167.54 216110000 15217000 18098000 15908000 0 0 0 21503000 20457000 19332000 0 0 0 11983000 11298000 10231000 0 0 0 25871000 23747000 22461000 0 0 0 10133 849 9867 189292;189293;189294;189295;189296;189297;189298;189299;189300;189301;189302;189303 116856;116857;116858;116859;116860;116861;116862;116863;116864;116865;116866;116867 116864 12 INEEFQDYAWVKPEDLVHYDLNVATR Unmodified 3163.5251 0.52507892 1597 P52006 nudI Nucleoside triphosphatase NudI yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.632 49.268 4 1.2324E-10 24339 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.05 124.33 220840000 5211400 6349200 6871800 0 0 0 22165000 20998000 26660000 0 0 0 22524000 20955000 20609000 0 0 0 22250000 23527000 22723000 0 0 0 10134 1597 9868 189304;189305;189306;189307;189308;189309;189310;189311;189312;189313;189314;189315 116868;116869;116870;116871;116872;116873;116874 116868 7 INEFFDQPTQGYQDGFEK Unmodified 2161.9593 0.95926398 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 41.139 39.513 2;3 5.6885E-14 13936 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 188.4 186.7 102770000 14414000 13800000 16363000 18441000 20936000 18814000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10135 76 9869 189316;189317;189318;189319;189320;189321;189322;189323;189324 116875;116876;116877;116878;116879;116880 116875 6 INELAHAAMTNQDYPTFNFLQWYVSEQHEEEK Unmodified 3881.7632 0.76315372 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 1 2 2 2 1 1 52.464 51.149 3;4 6.4225E-25 25162 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 161.15 159.71 2292100000 21630000 28035000 20852000 0 0 0 298930000 250470000 251060000 150210000 160460000 124320000 188770000 147860000 119330000 0 0 0 165010000 155620000 161800000 0 25201000 22537000 10136 501 9870 189325;189326;189327;189328;189329;189330;189331;189332;189333;189334;189335;189336;189337;189338;189339;189340;189341;189342;189343;189344;189345;189346;189347;189348;189349;189350;189351;189352 116881;116882;116883;116884;116885;116886;116887;116888;116889;116890;116891;116892;116893;116894;116895;116896;116897;116898;116899;116900;116901 116890 21 INELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFK Unmodified 4270.0106 0.010594632 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 2 2 1 2 53.367 51.949 4;5 4.009E-34 20705 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 190.14 189.01 696870000 0 0 0 1488300 1557200 1615900 0 0 0 226100000 182140000 185390000 0 0 0 0 0 0 0 0 0 51350000 8506100 38728000 10137 501 9871 189353;189354;189355;189356;189357;189358;189359;189360;189361;189362;189363;189364;189365;189366 116902;116903;116904;116905;116906;116907;116908;116909 116908 8 INEVTATAVK Unmodified 1044.5815 0.58152458 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.34 15.924 2 0.0025077 5321 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.647 60.934 1147100000 102890000 101250000 86018000 1896100 2104200 1472500 104950000 105560000 99996000 9134000 9933300 8649100 66226000 59254000 58867000 2337600 1383900 0 110350000 98944000 96615000 7557100 6406700 5349800 10138 1408 9872 189367;189368;189369;189370;189371;189372;189373;189374;189375;189376;189377;189378;189379;189380;189381;189382;189383;189384;189385;189386;189387;189388;189389 116910;116911;116912;116913;116914;116915;116916 116914 0 INEVTATAVKR Unmodified 1200.6826 0.68263561 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 12.732 13.206 3 0.023574 3054 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 44.847 36.118 15551000 0 0 0 4108600 4625600 0 0 0 0 0 860470 0 0 0 0 3007400 2949300 0 0 0 0 0 0 0 10139 1408 9873 189390;189391;189392;189393;189394 116917 116917 1 INGATVDVR Unmodified 943.50869 0.50869399 1315 P28248 dcd Deoxycytidine triphosphate deaminase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.824 15.622 2 0.0061182 5303 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 76.064 52.092 185380000 28391000 25190000 26016000 0 0 0 25071000 0 21698000 0 0 0 6486700 9491500 7335400 0 0 0 23424000 12282000 0 0 0 0 10140 1315 9874 189395;189396;189397;189398;189399;189400;189401;189402;189403;189404;189405;189406 116918;116919;116920;116921 116918 4 INGLTDLAK Unmodified 943.53385 0.53384611 1996 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 2 1 1 2 1 1 33.29 31.783 2 0.074686 15325 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 46.813 6.7098 99068000 8402300 8913600 0 0 0 0 7937000 6849100 13289000 0 0 0 6988800 6613900 0 0 0 0 20408000 12028000 7637000 0 0 0 + 10141 1996 9875 189407;189408;189409;189410;189411;189412;189413;189414;189415;189416;189417;189418 116922;116923 116922 2 INGQVITIK Unmodified 984.59678 0.59678072 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.826 22.12 2 0.00011959 7953 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 133.58 90.458 1380300000 229290000 210640000 207730000 0 0 11949000 74293000 74322000 71672000 24951000 24380000 26182000 95052000 82759000 105990000 0 0 0 0 141080000 0 0 0 0 10142 987 9876 189419;189420;189421;189422;189423;189424;189425;189426;189427;189428;189429;189430;189431;189432 116924;116925;116926;116927;116928;116929;116930;116931;116932;116933;116934;116935 116924 12 INHGDNPLDASTVHPEAYPVVER Unmodified 2529.2248 0.22481458 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.952 27.529 3;4 1.3866E-15 12695 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.84 141.58 329760000 37003000 30592000 23820000 0 0 0 27946000 27556000 24661000 3193100 2988300 0 17992000 19631000 16739000 0 0 0 32530000 36312000 28800000 0 0 0 10143 1586 9877 189433;189434;189435;189436;189437;189438;189439;189440;189441;189442;189443;189444;189445;189446 116936;116937;116938;116939 116937 4 INIIDTPGHVDFTIEVER Unmodified 2067.0637 0.063669474 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 2 2 1 2 3 3 1 1 1 4 4 4 1 1 2 4 5 4 1 1 1 46.136 44.769 2;3 6.9573E-45 21229 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 295.37 295.28 11255000000 712060000 695190000 659250000 24372000 24991000 20664000 1325000000 1062200000 1026800000 21243000 19758000 17296000 797550000 865800000 748300000 8560700 7628400 6701100 1107000000 1179400000 872840000 21943000 15382000 15239000 10144 264 9878 189447;189448;189449;189450;189451;189452;189453;189454;189455;189456;189457;189458;189459;189460;189461;189462;189463;189464;189465;189466;189467;189468;189469;189470;189471;189472;189473;189474;189475;189476;189477;189478;189479;189480;189481;189482;189483;189484;189485;189486;189487;189488;189489;189490;189491;189492;189493;189494;189495;189496;189497;189498;189499;189500;189501;189502;189503;189504;189505 116940;116941;116942;116943;116944;116945;116946;116947;116948;116949;116950;116951;116952;116953;116954;116955;116956;116957;116958;116959;116960;116961;116962;116963;116964;116965;116966;116967;116968;116969;116970;116971;116972;116973;116974;116975;116976;116977;116978;116979;116980;116981;116982;116983;116984;116985;116986;116987;116988;116989;116990;116991;116992;116993;116994;116995;116996;116997;116998;116999;117000;117001;117002;117003;117004;117005;117006;117007;117008;117009;117010;117011;117012;117013;117014;117015;117016;117017;117018;117019;117020;117021;117022;117023;117024;117025;117026;117027;117028;117029;117030;117031;117032;117033;117034;117035;117036;117037;117038;117039;117040;117041;117042 116980 103 INIVDTPGHADFGGEVER Unmodified 1924.9279 0.92790427 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 1 1 1 30.667 29.253 2;3 2.0898E-36 13958 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 264.87 254.82 7137400000 461980000 445020000 423010000 7905000 10018000 10487000 667580000 681590000 648380000 12553000 11064000 10287000 653860000 580190000 599250000 7141700 5679500 6880700 615390000 644850000 612520000 7440600 7298800 7032700 10145 1388 9879 189506;189507;189508;189509;189510;189511;189512;189513;189514;189515;189516;189517;189518;189519;189520;189521;189522;189523;189524;189525;189526;189527;189528;189529;189530;189531;189532;189533;189534;189535;189536;189537;189538;189539;189540;189541;189542;189543;189544 117043;117044;117045;117046;117047;117048;117049;117050;117051;117052;117053;117054;117055;117056;117057;117058;117059;117060;117061;117062;117063;117064;117065;117066;117067;117068;117069;117070;117071;117072;117073;117074;117075;117076;117077 117050 35 INLAYTK Unmodified 821.4647 0.46470391 826 P0AE06;P24180 acrA;acrE Multidrug efflux pump subunit AcrA;Multidrug export protein AcrE yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.025 19.356 2 0.0019296 5525 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 121.29 51.86 783730000 26219000 27330000 17567000 9868200 9596300 9799400 61781000 61190000 54384000 51238000 42639000 39364000 33402000 30629000 29265000 5730700 5303600 4421000 68646000 71273000 68014000 19941000 17693000 18434000 10146 826 9880 189545;189546;189547;189548;189549;189550;189551;189552;189553;189554;189555;189556;189557;189558;189559;189560;189561;189562;189563;189564;189565;189566;189567;189568 117078;117079;117080;117081;117082;117083;117084;117085;117086;117087;117088;117089;117090;117091;117092;117093;117094;117095;117096;117097;117098;117099;117100;117101 117080 24 INLDIPGAVAQALR Unmodified 1449.8304 0.83036248 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 51.952 50.686 2;3 2.7482E-05 24652 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.24 102.79 468570000 56497000 57475000 45413000 0 0 0 44285000 41088000 43659000 994420 0 0 24674000 20934000 18368000 0 0 0 34382000 40459000 40343000 0 0 0 10147 1334 9881 189569;189570;189571;189572;189573;189574;189575;189576;189577;189578;189579;189580;189581;189582;189583;189584;189585;189586;189587;189588;189589;189590;189591;189592;189593 117102;117103;117104;117105;117106;117107;117108 117106 0 INLGIGVYK Unmodified 975.57532 0.57531699 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.086 32.638 2 0.00077202 15566 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.64 91.229 2353900000 226700000 232240000 214080000 0 0 0 208570000 226030000 206630000 0 0 0 174820000 138920000 163490000 0 0 0 189560000 194210000 178660000 0 0 0 10148 31 9882 189594;189595;189596;189597;189598;189599;189600;189601;189602;189603;189604;189605 117109;117110;117111;117112;117113;117114;117115 117112 4 INLGIGVYKDETGK Unmodified 1505.809 0.80895834 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 28.483 27.236 2;3 1.6088E-19 12600 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 253.79 230.04 2536400000 308170000 289320000 244990000 0 0 0 197150000 239280000 223240000 0 0 0 132350000 151250000 165550000 0 0 0 198180000 214590000 172350000 0 0 0 10149 31 9883 189606;189607;189608;189609;189610;189611;189612;189613;189614;189615;189616;189617;189618;189619;189620;189621;189622;189623;189624;189625;189626;189627;189628;189629 117116;117117;117118;117119;117120;117121;117122;117123;117124;117125;117126;117127;117128;117129;117130;117131;117132;117133;117134;117135;117136;117137;117138;117139 117123 24 INLHTQR Unmodified 880.4879 0.48789897 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 12.007 12.261 2 0.006056 3035 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 97.068 52.457 35597000 0 10533000 10418000 0 0 0 0 0 0 0 1019800 1270100 0 0 0 4889000 3992000 3474400 0 0 0 0 0 0 10150 1632 9884 189630;189631;189632;189633;189634;189635;189636 117140 117140 1 INLLDDNQFTR Unmodified 1347.6783 0.67827852 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.476 36.845 2 1.9558E-34 14290 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 272.62 267.06 1439900000 76200000 70466000 68345000 39992000 39889000 38082000 42386000 44651000 43801000 133760000 118810000 121780000 43849000 40268000 36892000 49212000 36079000 33661000 56837000 55225000 51554000 67238000 65765000 65125000 10151 144 9885 189637;189638;189639;189640;189641;189642;189643;189644;189645;189646;189647;189648;189649;189650;189651;189652;189653;189654;189655;189656;189657;189658;189659;189660;189661 117141;117142;117143;117144;117145;117146;117147;117148;117149;117150;117151;117152;117153;117154;117155;117156;117157;117158;117159;117160;117161;117162;117163;117164 117150 24 INLLDLNR Unmodified 969.56073 0.56072956 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.375 36.526 2 2.4781E-06 17758 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 185.42 138.36 297140000 19878000 24779000 20321000 3243000 3400100 2872200 16143000 18638000 16712000 14457000 12460000 12918000 12998000 13213000 11878000 0 0 0 26269000 26723000 24324000 8597400 7314300 0 10152 1451 9886 189662;189663;189664;189665;189666;189667;189668;189669;189670;189671;189672;189673;189674;189675;189676;189677;189678;189679;189680;189681;189682 117165;117166;117167;117168;117169;117170;117171;117172;117173;117174;117175;117176;117177;117178;117179;117180;117181 117176 16 INLTLYR Unmodified 891.5178 0.51780212 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.966 29.61 2 7.0296E-05 13897 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.94 139.35 209840000 20483000 20705000 21098000 0 0 0 15091000 15759000 17146000 0 0 0 14778000 14843000 14995000 0 0 0 18882000 18017000 18043000 0 0 0 10153 345 9887 189683;189684;189685;189686;189687;189688;189689;189690;189691;189692;189693;189694 117182;117183;117184;117185;117186;117187;117188;117189;117190 117185 9 INMIQAGAASR Unmodified 1130.5866 0.58662674 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 20.157 20.55 2 1.4444E-05 5914 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 142.36 124.33 80851000 7825600 0 2454400 21940000 20354000 24421000 0 0 3855400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10154 114 9888 189695;189696;189697;189698;189699;189700 117191;117192 117191 1 INPAGAPTYVPGEYK Unmodified 1575.7933 0.79330827 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 28.848 27.562 2;3 0.00018638 12217 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 111.26 104.37 21584000000 2086400000 1783800000 1597500000 21166000 18886000 21043000 1410700000 1351300000 1350100000 58552000 49214000 48307000 1702600000 1735700000 1677800000 27596000 15274000 15279000 2215600000 2175100000 2138700000 25403000 28249000 29906000 10155 396 9889 189701;189702;189703;189704;189705;189706;189707;189708;189709;189710;189711;189712;189713;189714;189715;189716;189717;189718;189719;189720;189721;189722;189723;189724;189725;189726;189727;189728;189729;189730;189731;189732;189733;189734;189735;189736;189737;189738;189739;189740;189741;189742;189743;189744;189745;189746 117193;117194;117195;117196;117197;117198;117199;117200;117201;117202;117203;117204;117205;117206;117207;117208;117209;117210;117211;117212;117213;117214;117215;117216;117217;117218;117219;117220;117221;117222;117223;117224;117225 117221 33 INPCGYAGMEMAK Unmodified 1440.62 0.61997705 1629 P60720 lipB Octanoyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 27.861 26.694 2 0.00057841 12278 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.744 77.436 132230000 10228000 10888000 11123000 493370 0 0 10392000 9224700 8784500 0 0 0 11745000 8054800 9314800 0 0 0 15370000 12470000 14138000 0 0 0 10156 1629 9890 189747;189748;189749;189750;189751;189752;189753;189754;189755;189756;189757;189758;189759 117226 117226 1 INPDEILVAHDELDLPPGVAK Unmodified 2254.1845 0.18451289 332 P0A7D1 pth Peptidyl-tRNA hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 2 1 1 1 46.851 45.459 3 0.0001354 22224 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.168 64.77 120850000 20675000 16841000 19003000 0 0 0 0 10082000 12645000 0 0 0 0 11497000 11489000 0 0 0 0 0 18617000 0 0 0 10157 332 9891 189760;189761;189762;189763;189764;189765;189766;189767;189768;189769 117227;117228;117229;117230;117231;117232;117233 117230 7 INPDKIKDVIGK Unmodified 1338.7871 0.78710068 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 20.833 21.076 3 0.001004 6116 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 68.676 64.688 23884000 0 0 0 8591600 6136300 6512200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2643700 0 10158 107 9892 189770;189771;189772;189773 117234;117235;117236 117236 3 INPEANHEHVCLLGCGVTTGIGAVHNTAK Unmodified 3068.492 0.49202143 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 26.759 25.612 3;4;5 1.3448E-07 11599 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.809 85.582 3601800000 345970000 308280000 255540000 0 0 0 382280000 368300000 283400000 0 0 0 263040000 256080000 278580000 0 0 0 287140000 301870000 271360000 0 0 0 10159 1253 9893 189774;189775;189776;189777;189778;189779;189780;189781;189782;189783;189784;189785;189786;189787;189788;189789;189790;189791;189792;189793;189794;189795;189796;189797;189798;189799;189800;189801;189802;189803;189804;189805;189806;189807;189808;189809 117237;117238;117239;117240;117241;117242;117243;117244;117245;117246;117247;117248;117249;117250;117251;117252;117253;117254;117255;117256;117257;117258 117247 22 INPGLAHYAEIIDVLGK Unmodified 1821.9989 0.99888437 237 P0A6E9 bioD2 ATP-dependent dethiobiotin synthetase BioD 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 49.377 47.991 2;3 8.2463E-11 23873 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 170.74 153 885870000 20530000 21524000 19704000 0 514690 0 133920000 145210000 127940000 2626600 3688700 4011400 86805000 71139000 77560000 0 0 0 55990000 62475000 50812000 0 0 1426800 10160 237 9894 189810;189811;189812;189813;189814;189815;189816;189817;189818;189819;189820;189821;189822;189823;189824;189825;189826;189827;189828;189829;189830;189831;189832;189833;189834;189835;189836 117259;117260;117261;117262;117263;117264;117265;117266;117267;117268;117269;117270;117271;117272;117273;117274 117260 14 INPGNIGNEER Unmodified 1211.5895 0.58946351 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 15.814 16.42 2 0.000312 4518 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 90.15 79.627 145410000 0 0 0 2641600 2530000 2225900 0 0 0 0 1713000 0 0 0 38469000 0 0 0 0 0 85496000 3951900 3680100 4703500 10161 1649 9895 189837;189838;189839;189840;189841;189842;189843;189844;189845;189846 117275;117276;117277;117278;117279;117280;117281;117282 117276 7 INPHSAR Unmodified 793.41949 0.41948505 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 1 5.5483 6.3236 2 0.0066942 1032 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 94.407 74.92 284610000 78499000 76707000 66220000 0 0 0 0 0 0 0 0 0 12283000 11222000 11699000 0 0 0 10268000 9198800 8443600 72851 0 0 10162 529 9896 189847;189848;189849;189850;189851;189852;189853;189854;189855;189856;189857;189858;189859 117283;117284;117285;117286;117287;117288 117287 6 INPIEDMPYDENGTPVDIVLNPLGVPSR Unmodified 3063.5223 0.52230173 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 3 2 2 4 3 4 2 3 3 5 5 4 2 2 2 4 5 3 55.111 53.962 2;3;4;5 5.7786E-80 21556 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 276.3 270.87 23868000000 95517000 78438000 30333000 10580000 8391300 12041000 50990000 46493000 42744000 1589600000 1493800000 1572000000 102380000 94753000 94077000 3892000000 5190500000 3273300000 109280000 118840000 102860000 2028000000 1922600000 1908100000 10163 463 9897 189860;189861;189862;189863;189864;189865;189866;189867;189868;189869;189870;189871;189872;189873;189874;189875;189876;189877;189878;189879;189880;189881;189882;189883;189884;189885;189886;189887;189888;189889;189890;189891;189892;189893;189894;189895;189896;189897;189898;189899;189900;189901;189902;189903;189904;189905;189906;189907;189908;189909;189910;189911;189912;189913;189914;189915;189916;189917;189918;189919;189920;189921;189922;189923;189924;189925;189926;189927 117289;117290;117291;117292;117293;117294;117295;117296;117297;117298;117299;117300;117301;117302;117303;117304;117305;117306;117307;117308;117309;117310;117311;117312;117313;117314;117315;117316;117317;117318;117319;117320;117321;117322;117323;117324;117325;117326 117315 38 INPIEDMPYDENGTPVDIVLNPLGVPSR Oxidation (M) 3079.5172 0.51721635 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 54.766 53.808 2;3 1.5967E-52 21378 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 227.09 224.27 1219300000 0 0 0 0 0 0 0 0 0 108770000 92214000 83168000 0 0 0 186510000 173820000 187480000 0 0 0 120860000 127670000 138780000 10164 463 9897 189928;189929;189930;189931;189932;189933;189934;189935;189936;189937;189938;189939;189940;189941;189942;189943;189944;189945 117327;117328;117329;117330;117331;117332;117333;117334;117335;117336;117337;117338;117339;117340 117338 266 14 INQALSSIGALVLSDYAK Unmodified 1862.0149 0.014928368 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 1 1 1 54.143 52.729 2;3 5.6184E-14 25920 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.33 144.19 521830000 88894000 82904000 74005000 0 2539600 0 0 0 0 6701400 5778900 14448000 67038000 66942000 42616000 0 0 0 0 34416000 35546000 0 0 0 10165 1880 9898 189946;189947;189948;189949;189950;189951;189952;189953;189954;189955;189956;189957;189958;189959;189960;189961;189962 117341;117342;117343;117344;117345;117346;117347;117348;117349;117350;117351;117352;117353 117347 13 INQHVINR Unmodified 992.55156 0.55156186 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.246 12.086 2 0.00042035 2931 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.12 55.873 415870000 6404300 2966300 0 0 0 0 73713000 63894000 66945000 0 0 0 48547000 39143000 44042000 0 0 0 23436000 24915000 21868000 0 0 0 10166 506 9899 189963;189964;189965;189966;189967;189968;189969;189970;189971;189972;189973 117354;117355;117356;117357;117358;117359 117358 6 INQLDSDNK Unmodified 1045.504 0.50400254 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.447 12.324 2 0.011832 3107 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.877 33.071 75710000 0 0 0 0 0 0 5178700 4809500 2695900 0 0 0 3999300 6360100 6722500 0 0 0 13778000 16131000 16035000 0 0 0 10167 75 9900 189974;189975;189976;189977;189978;189979;189980;189981;189982 117360;117361 117360 0 INQLLNESLMLVTALNTHIGYDK Unmodified 2599.368 0.36797334 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.01 53.571 3 1.6097E-12 26502 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.8 132.22 509740000 132440000 116910000 122340000 2582700 1961600 0 26022000 0 23284000 0 0 0 0 18592000 0 0 0 0 0 38386000 27229000 0 0 0 10168 106 9901 189983;189984;189985;189986;189987;189988;189989;189990;189991;189992 117362 117362 1 INQLVVEPTLQTTR Unmodified 1610.8992 0.89917033 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 1 2 2 1 2 2 1 1 34.617 32.875 2;3 2.5567E-14 14965 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 184.27 175.31 886470000 25354000 21519000 17906000 5096600 6375500 5804600 107250000 102990000 100280000 39618000 38085000 32007000 55853000 51279000 47938000 0 0 0 71955000 57668000 67458000 9697100 12017000 10327000 10169 27 9902 189993;189994;189995;189996;189997;189998;189999;190000;190001;190002;190003;190004;190005;190006;190007;190008;190009;190010;190011;190012;190013;190014;190015;190016;190017;190018;190019;190020;190021;190022;190023;190024 117363;117364;117365;117366;117367;117368;117369;117370;117371;117372;117373;117374;117375;117376;117377;117378;117379;117380;117381;117382;117383 117383 19 INQLVVEPTLQTTRDPDIYAIGDCASCPRPEGGFVPPR Unmodified 4238.0889 0.088861727 27 P00393 ndh NADH dehydrogenase yes yes 0 0 2 By MS/MS 1 44.863 42.664 4 7.8768E-08 17039 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 81.91 80.871 8587600 0 0 0 0 0 0 0 0 0 0 0 8587600 0 0 0 0 0 0 0 0 0 0 0 0 10170 27 9903 190025 117384 117384 1 INQQAMAWSR Unmodified 1203.5819 0.58187571 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.421 21.923 2 3.6799E-05 7743 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 159.37 150.51 503720000 26302000 28597000 31046000 4434400 5437500 5622900 33028000 24772000 30672000 7887600 6973900 8037200 33854000 31331000 24774000 6725000 3583000 3657300 49239000 62305000 50319000 11182000 7587000 6355700 10171 862 9904 190026;190027;190028;190029;190030;190031;190032;190033;190034;190035;190036;190037;190038;190039;190040;190041;190042;190043;190044;190045;190046;190047;190048;190049 117385;117386;117387;117388;117389;117390;117391;117392;117393;117394;117395;117396;117397;117398;117399 117388 14 INQTDIDR Unmodified 973.48287 0.48287317 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.767 13.289 2 7.1553E-05 3093 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 166.78 123.78 2662300000 0 0 0 0 0 0 256640000 236830000 284120000 46031000 43454000 49025000 259760000 215870000 232560000 9737000 9981300 9048800 302800000 322040000 311380000 25557000 23766000 23698000 10172 1442 9905 190050;190051;190052;190053;190054;190055;190056;190057;190058;190059;190060;190061;190062;190063;190064;190065;190066;190067 117400;117401;117402;117403;117404;117405;117406;117407;117408;117409;117410;117411;117412;117413;117414;117415;117416;117417 117410 16 INQTDIDRLIELVGGR Unmodified 1810.9901 0.9901106 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.901 52.943 3 6.2779E-14 19894 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 169.37 161.59 89092000 0 0 0 0 0 0 0 0 0 7571800 9899400 11593000 0 0 0 6237000 15477000 13147000 0 0 0 8567400 9800500 6800400 10173 1442 9906 190068;190069;190070;190071;190072;190073;190074;190075;190076 117418;117419;117420 117420 3 INQTSAMPEK Unmodified 1117.5438 0.54375887 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 12.338 13.196 2 0.0002603 3865 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 115.71 107.25 134240000 17289000 16473000 19925000 0 0 0 0 0 0 0 0 0 16016000 13321000 10062000 0 0 0 14001000 14788000 12363000 0 0 0 10174 1399 9907 190077;190078;190079;190080;190081;190082;190083;190084;190085;190086;190087 117421;117422;117423;117424;117425;117426;117427;117428;117429 117424 9 INQVYVVLK Unmodified 1074.6437 0.64373091 968 P0AFX0 hpf Ribosome hibernation promoting factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 30.623 29.127 1;2 9.5966E-05 13638 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.18 94.31 5293600000 790950000 771660000 711440000 1490800 2086100 2450100 554230000 504730000 513110000 3301500 3861800 3138400 226570000 236210000 239370000 0 0 0 234580000 245580000 245120000 0 1967500 1767600 10175 968 9908 190088;190089;190090;190091;190092;190093;190094;190095;190096;190097;190098;190099;190100;190101;190102;190103;190104;190105;190106;190107;190108;190109;190110;190111;190112;190113;190114;190115;190116;190117;190118;190119 117430;117431;117432;117433;117434;117435;117436;117437;117438;117439;117440;117441;117442;117443 117433 13 INSAKDDAAGQAIANR Unmodified 1613.8121 0.81214624 96 P04949 fliC Flagellin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 12.036 13.123 3 8.7967E-09 2825 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 96.247 84.807 22365000 0 0 0 8161700 7303600 6899700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10176 96 9909 190120;190121;190122 117444;117445;117446 117445 3 INSLAMPVK Unmodified 971.54739 0.54738768 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 24.801 23.895 2 0.00058912 10212 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 106.36 47.439 177770000 23479000 22113000 20943000 0 0 0 0 30185000 0 0 0 0 10545000 9320500 12533000 0 0 0 11816000 18293000 18540000 0 0 0 10177 1926 9910 190123;190124;190125;190126;190127;190128;190129;190130;190131;190132 117447;117448;117449;117450;117451;117452 117450 6 INSNEELALPK Unmodified 1226.6507 0.65066678 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.059 24.812 2 1.0333E-06 10621 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 156.83 140.37 7693400000 1015600000 907140000 853370000 0 0 0 724290000 702550000 671870000 5550300 6843400 6090500 432640000 407090000 373390000 0 0 0 514450000 563780000 496410000 3965600 3621300 4793600 10178 1577 9911 190133;190134;190135;190136;190137;190138;190139;190140;190141;190142;190143;190144;190145;190146;190147;190148;190149;190150 117453;117454;117455;117456;117457;117458;117459;117460;117461;117462 117460 10 INTDCDK Unmodified 864.36473 0.36473187 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 6.2008 7.1224 2 0.0017557 1281 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 124.37 113.4 31769000 0 0 0 0 0 0 0 0 0 0 0 0 6302000 6401500 8299900 0 0 0 3782800 3586100 3396400 0 0 0 10179 40 9912 190151;190152;190153;190154;190155;190156 117463;117464;117465 117465 3 INTDCDKTDGFVITHGTDTMEETAYFLDLTVK Unmodified 3649.6804 0.68039487 40 P00805 ansB L-asparaginase 2 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 1 53.13 51.661 3;4 2.2692E-34 25659 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 209.18 208.65 243070000 0 0 0 0 0 0 30543000 27228000 23335000 0 0 0 13930000 13157000 11173000 0 0 0 57386000 58379000 7937400 0 0 0 10180 40 9913 190157;190158;190159;190160;190161;190162;190163;190164;190165;190166;190167;190168;190169;190170 117466;117467;117468;117469;117470 117466 3 INTGVGFFDHMLDQIATHGGFR Unmodified 2432.1695 0.1695483 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 2 2 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 53.637 52.334 3;4 8.8306E-22 26034 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.62 163.48 900720000 112500000 112980000 110640000 9646900 6789600 13714000 66748000 63451000 58436000 6648700 15581000 14350000 46589000 43969000 41633000 3282500 3898600 7945600 55798000 48493000 44507000 6285300 6836200 0 10181 139 9914 190171;190172;190173;190174;190175;190176;190177;190178;190179;190180;190181;190182;190183;190184;190185;190186;190187;190188;190189;190190;190191;190192;190193;190194;190195;190196;190197;190198;190199;190200;190201;190202;190203;190204 117471;117472;117473;117474;117475;117476;117477;117478;117479;117480;117481;117482;117483;117484;117485;117486 117472 16 INTQCTFVENPLDALIPSLK Unmodified 2272.1773 0.17731902 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.139 53.672 2 3.3318E-19 26758 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 179.55 169.1 267440000 91906000 0 61944000 0 0 0 0 10007000 9591400 0 0 0 13956000 12792000 13797000 0 0 0 18586000 15039000 19818000 0 0 0 10182 887 9915 190205;190206;190207;190208;190209;190210;190211;190212;190213;190214 117487;117488 117488 2 INTVESPFAEYSSLDELFQETYKHEQLITQK Unmodified 3686.7992 0.7991881 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 2 2 2 2 2 1 1 1 2 2 1 2 2 1 54.083 52.657 3;4 3.4313E-43 21219 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 218.67 216.33 2077700000 17512000 12366000 11751000 0 0 0 180400000 183890000 176900000 286060000 277660000 303040000 18612000 90398000 0 0 4993000 0 117330000 116580000 81002000 72430000 66575000 60157000 10183 501 9916 190215;190216;190217;190218;190219;190220;190221;190222;190223;190224;190225;190226;190227;190228;190229;190230;190231;190232;190233;190234;190235;190236;190237;190238;190239;190240;190241;190242 117489;117490;117491;117492;117493;117494;117495;117496;117497;117498 117491 10 INVATELK Unmodified 886.51238 0.51238239 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.81 20.966 2 3.6809E-05 6977 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 173.68 97.641 9105200000 0 811300000 774520000 53319000 45402000 43960000 1018500000 936560000 1142000000 110460000 107890000 101750000 643120000 632900000 549810000 9487100 7911400 8399600 712810000 698850000 642090000 19760000 15011000 19407000 10184 1045 9917 190243;190244;190245;190246;190247;190248;190249;190250;190251;190252;190253;190254;190255;190256;190257;190258;190259;190260;190261;190262;190263;190264;190265 117499;117500;117501;117502;117503;117504;117505;117506;117507;117508;117509;117510;117511;117512;117513;117514;117515;117516;117517;117518;117519 117502 20 INVICEKPLASNLAEVDAAIACAR Unmodified 2597.3305 0.33054198 1555 P42599 ygjR Uncharacterized oxidoreductase YgjR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 46.818 45.42 3 2.2063E-22 22069 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 174.47 162.03 395760000 62050000 70331000 62278000 0 0 0 29347000 38336000 34036000 0 0 0 21251000 14616000 17916000 0 0 0 24835000 0 20761000 0 0 0 10185 1555 9918 190266;190267;190268;190269;190270;190271;190272;190273;190274;190275;190276 117520;117521;117522;117523;117524;117525;117526;117527;117528;117529;117530 117526 11 INVTAYQGK Unmodified 992.5291 0.52909508 1692 P64596 yraP Uncharacterized protein YraP yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.925 17.404 2 0.00025255 6445 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.99 100.46 143170000 9063400 10264000 6447400 0 0 0 12781000 11711000 12705000 8884000 8185100 3168600 8236400 5081000 1308200 1469500 888250 910000 14070000 16791000 11209000 0 0 0 10186 1692 9919 190277;190278;190279;190280;190281;190282;190283;190284;190285;190286;190287;190288;190289;190290;190291;190292;190293;190294;190295 117531;117532;117533;117534;117535;117536;117537;117538 117534 8 IPAEEVTVR Unmodified 1012.5553 0.55530983 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.448 19.071 2 0.0025489 7265 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.743 68.449 741930000 102490000 102660000 88284000 4132500 3826400 4365200 56256000 51244000 59921000 0 0 0 43962000 42606000 35970000 0 0 0 47654000 51397000 47153000 0 0 0 10187 235 9920 190296;190297;190298;190299;190300;190301;190302;190303;190304;190305;190306;190307;190308;190309;190310 117539;117540;117541;117542;117543;117544;117545 117539 7 IPAELLTALK Unmodified 1067.659 0.65904662 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.137 40.439 2 0.00015063 19004 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 125.82 125.82 511010000 55199000 45711000 42233000 0 0 0 46000000 51855000 46138000 0 0 0 38448000 22720000 30616000 0 0 0 42738000 46885000 42467000 0 0 0 10188 1609 9921 190311;190312;190313;190314;190315;190316;190317;190318;190319;190320;190321;190322 117546;117547;117548;117549;117550;117551;117552;117553;117554;117555;117556 117554 11 IPAEQWLDKR Unmodified 1254.6721 0.67207093 1970 Q46948 yajL Probable protein deglycase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.124 24.016 3 0.0002904 10590 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.763 71.331 138290000 15430000 15790000 0 4385300 2929600 4284100 18416000 18883000 20768000 0 0 0 0 0 0 0 0 0 8220600 10714000 7358600 2909400 3477400 4726300 10189 1970 9922 190323;190324;190325;190326;190327;190328;190329;190330;190331;190332;190333;190334;190335;190336 117557;117558 117557 2 IPAGVDTGDR Unmodified 999.49852 0.49852324 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.417 15.07 2 0.0038208 4936 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 70.816 55.154 79772000 0 0 0 4070300 4033100 3669700 12646000 0 0 0 13427000 12377000 7288800 0 0 0 0 0 0 16020000 0 0 0 6239700 10190 190 9923 190337;190338;190339;190340;190341;190342;190343;190344;190345;190346;190347;190348 117559;117560;117561;117562;117563;117564;117565;117566;117567 117561 9 IPAGVGNGQR Unmodified 967.51993 0.51992738 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 0 By MS/MS By MS/MS 1 1 12.142 12.87 2 0.010861 3571 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 66.429 48.663 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10191 1440 9924 190349;190350 117568;117569 117568 2 IPALIESGELESTIGLPMNK Unmodified 2111.1184 0.11840716 1322 P28861 fpr Ferredoxin--NADP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 1 2 2 2 2 2 1 2 52.828 51.48 2;3 3.5237E-38 25403 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 246.64 237.59 245210000 40512000 43038000 29228000 0 0 0 18501000 10985000 18542000 0 0 0 14609000 12500000 13934000 0 0 0 19358000 9300800 14704000 0 0 0 10192 1322 9925 190351;190352;190353;190354;190355;190356;190357;190358;190359;190360;190361;190362;190363;190364;190365;190366;190367;190368;190369;190370;190371;190372 117570;117571;117572;117573;117574;117575;117576;117577;117578 117574 7 IPALVENR Unmodified 910.52362 0.52361577 1104 P15067 glgX Glycogen debranching enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.529 21.674 2 0.15592 8937 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 48.036 23.833 95795000 11160000 10155000 10204000 0 0 0 10501000 8366200 10733000 0 0 0 7422500 4008900 4127600 0 0 0 7176300 6305100 5633000 0 0 0 10193 1104 9926 190373;190374;190375;190376;190377;190378;190379;190380;190381;190382;190383;190384 117579 117579 0 IPAQPQLMLDMEQAR Unmodified 1739.8699 0.86986081 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 43.326 41.786 2;3 1.2533E-06 20793 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.26 141.41 991930000 7485300 5345500 3475600 0 0 0 100900000 116820000 96805000 0 0 0 146820000 129230000 135930000 0 0 0 87547000 84380000 77183000 0 0 0 10194 1947 9927 190385;190386;190387;190388;190389;190390;190391;190392;190393;190394;190395;190396;190397;190398;190399;190400;190401;190402;190403;190404;190405 117580;117581;117582;117583;117584;117585;117586;117587;117588;117589;117590;117591;117592;117593;117594 117581 15 IPAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQAR Unmodified 3967.9646 0.96457114 1766 P75736 ybfF Esterase YbfF yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.708 51.401 4 2.5709E-11 24940 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 108.39 99.406 492650000 67130000 65707000 64943000 0 0 0 37265000 38603000 32971000 0 0 0 29136000 27527000 25904000 0 0 0 33151000 36892000 33419000 0 0 0 10195 1766 9928 190406;190407;190408;190409;190410;190411;190412;190413;190414;190415;190416;190417 117595;117596 117596 2 IPAWYDEAGNVYVGR Unmodified 1708.8209 0.82092001 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.568 40.869 2 6.8005E-12 19207 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 175.15 171.27 942930000 84267000 79936000 73829000 0 0 0 70826000 67681000 62072000 0 0 0 72878000 68004000 66437000 0 0 0 95175000 98409000 103420000 0 0 0 10196 158 9929 190418;190419;190420;190421;190422;190423;190424;190425;190426;190427;190428;190429 117597;117598;117599;117600;117601;117602;117603;117604;117605 117604 9 IPAYLSAK Unmodified 861.496 0.49600404 1161 P19930 hyaD Hydrogenase 1 maturation protease yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 22.035 21.605 2 0.037276 8969 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 62.464 34.042 42413000 0 0 0 0 0 0 12354000 14922000 10746000 1821400 1177800 1392300 0 0 0 0 0 0 0 0 0 0 0 0 10197 1161 9930 190430;190431;190432;190433;190434;190435 117606;117607 117607 2 IPDAVLAAEVSR Unmodified 1239.6823 0.68230126 1152 P18775 dmsA Dimethyl sulfoxide reductase DmsA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 33.367 32.231 2 0.093564 15405 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 51.252 40.728 20042000 0 0 0 0 0 0 0 0 0 0 0 0 2997800 2611400 2470600 0 587880 0 4656000 3651300 3066800 0 0 0 10198 1152 9931 190436;190437;190438;190439;190440;190441;190442 117608 117608 1 IPDDSPQPK Unmodified 995.49238 0.49237523 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.06 12.843 2 0.023408 2705 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 61.962 24.404 205100000 24867000 6287500 22281000 2661600 3111100 3110200 20358000 29051000 21329000 0 945150 667120 13076000 0 0 0 0 0 20629000 19000000 17722000 0 0 0 10199 839 9932 190443;190444;190445;190446;190447;190448;190449;190450;190451;190452;190453;190454;190455;190456;190457 117609;117610;117611 117609 3 IPDGQAEDAR Unmodified 1070.4993 0.49925152 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.828 12.685 2 1.1305E-06 3450 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.25 159.01 2533900000 560990000 585670000 507600000 0 608080 0 81113000 77002000 78768000 0 0 0 76640000 66942000 61313000 0 0 0 155220000 140750000 141300000 0 0 0 10200 1264 9933 190458;190459;190460;190461;190462;190463;190464;190465;190466;190467;190468;190469;190470 117612;117613;117614;117615;117616;117617;117618;117619;117620;117621;117622;117623 117619 12 IPDGQAEDARK Unmodified 1198.5942 0.59421454 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 10.663 11.518 2;3 2.84E-06 2772 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155.5 149.72 1376200000 341460000 304680000 316130000 1235400 1450600 1729200 38779000 34995000 38637000 0 0 0 30181000 27381000 24039000 0 0 0 70927000 64833000 79746000 0 0 0 10201 1264 9934 190471;190472;190473;190474;190475;190476;190477;190478;190479;190480;190481;190482;190483;190484;190485;190486;190487;190488;190489;190490;190491;190492;190493;190494;190495;190496;190497;190498 117624;117625;117626;117627;117628;117629;117630;117631;117632 117626 7 IPDVMPTK Unmodified 899.47864 0.47863942 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.582 22.739 2 0.00072492 10173 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.81 107.01 1389900000 108960000 110240000 107450000 0 0 0 113740000 111350000 111430000 0 3301200 3025400 133850000 105000000 92988000 0 0 0 128460000 131750000 126580000 1760100 0 0 10202 882 9935 190499;190500;190501;190502;190503;190504;190505;190506;190507;190508;190509;190510;190511;190512;190513 117633;117634;117635;117636;117637;117638;117639;117640;117641;117642;117643;117644 117633 12 IPEGESMQELSDR Unmodified 1489.6719 0.67187251 322 P0A7A2 gpmB Probable phosphoglycerate mutase GpmB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.736 23.739 2 2.8236E-12 10514 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 186.74 179.09 245240000 21827000 24900000 20080000 0 0 0 14664000 15244000 18851000 0 0 0 18627000 16009000 14414000 0 0 0 28555000 27579000 24489000 0 0 0 10203 322 9936 190514;190515;190516;190517;190518;190519;190520;190521;190522;190523;190524;190525 117645;117646;117647;117648 117646 3 IPEGLVR Unmodified 782.46504 0.46503826 1407 P33030 yeiR Uncharacterized protein YeiR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.017 20.442 2 0.0068198 8184 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.883 51.165 128800000 10438000 8131200 7101700 567540 0 0 13134000 11332000 14727000 0 0 0 8607400 8262200 7111700 2648200 0 0 0 17953000 18782000 0 0 0 10204 1407 9937 190526;190527;190528;190529;190530;190531;190532;190533;190534;190535;190536;190537;190538 117649;117650;117651 117650 3 IPELAGIK Unmodified 839.51165 0.5116541 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.069 26.854 2 0.00091102 10141 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 117.93 66.968 1312800000 59116000 60281000 49806000 11111000 11034000 11664000 103530000 96370000 98093000 25506000 24833000 25167000 114300000 102500000 88543000 6227500 3855200 5158700 127890000 119220000 123230000 15436000 11382000 18519000 10205 1427 9938 190539;190540;190541;190542;190543;190544;190545;190546;190547;190548;190549;190550;190551;190552;190553;190554;190555;190556;190557;190558;190559;190560;190561;190562 117652;117653;117654;117655;117656;117657;117658;117659;117660;117661;117662;117663;117664;117665;117666;117667;117668;117669;117670;117671;117672;117673;117674 117656 23 IPELAGIKDAAPDATFR Unmodified 1783.9468 0.9468488 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 36.637 34.79 2;3 3.4166E-06 13365 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 89.107 85.203 226450000 0 0 0 30335000 31454000 27381000 0 0 0 2126700 4583400 6030800 0 0 0 1436500 0 0 0 0 0 41357000 36650000 45095000 10206 1427 9939 190563;190564;190565;190566;190567;190568;190569;190570;190571;190572;190573;190574;190575;190576;190577;190578 117675;117676;117677;117678;117679;117680;117681;117682;117683 117677 7 IPFDDTLGSLTAR Unmodified 1404.7249 0.72489436 1930 P77713 yagH Putative beta-xylosidase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 44.302 42.962 2 0.047343 20941 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 48.004 43.705 24170000 9172300 7912500 7085100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10207 1930 9940 190579;190580;190581 117684;117685 117684 0 IPGFEQPWEEDFGKPER Unmodified 2059.964 0.96395543 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.641 39.945 3 6.7752E-05 18783 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 78.225 74.621 887820000 223230000 202080000 193360000 1335700 1113200 1287800 21042000 18517000 18543000 0 0 0 28363000 29175000 26048000 0 0 0 39059000 45293000 39373000 0 0 0 10208 1107 9941 190582;190583;190584;190585;190586;190587;190588;190589;190590;190591;190592;190593;190594;190595;190596 117686;117687;117688;117689;117690;117691;117692;117693;117694;117695;117696;117697 117695 12 IPGIHHILEVEDVPFTDMHDIFEK Unmodified 2830.4 0.40000175 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 48.844 47.798 4 0.019033 19265 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 41.597 41.428 59626000 0 0 0 0 0 0 0 0 0 9090800 10349000 7250000 0 0 0 3871700 6135600 6789000 0 0 0 4219600 7334100 4586600 10209 1932 9942 190597;190598;190599;190600;190601;190602;190603;190604;190605;190606 117698;117699;117700;117701;117702;117703;117704;117705 117702 8 IPGSFFR Unmodified 822.43882 0.43882351 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.423 28.902 2 0.00059133 12727 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.07 150.07 1791100000 69133000 61054000 63321000 8289700 6915400 8197500 152700000 163880000 161690000 7706700 7584600 5761800 151980000 141910000 130420000 0 2536900 0 207680000 215970000 207800000 5152000 5704500 5711400 10210 107 9943 190607;190608;190609;190610;190611;190612;190613;190614;190615;190616;190617;190618;190619;190620;190621;190622;190623;190624;190625;190626;190627;190628 117706;117707;117708;117709;117710;117711;117712;117713;117714;117715;117716;117717;117718;117719;117720;117721;117722;117723;117724;117725;117726;117727;117728 117727 23 IPIFAICR Unmodified 988.55281 0.55280741 1810 P76038 puuD Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD yes yes 0 0 0 By MS/MS By MS/MS 1 1 39.186 37.731 2 0.03338 18453 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.287 54.374 12131000 6731400 0 5399900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10211 1810 9944 190629;190630 117729;117730 117729 1 IPISGIAGDQQAALFGQLCVK Unmodified 2185.1565 0.156524 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 4 4 4 4 1 1 4 4 5 1 1 1 5 3 4 52.105 50.875 2;3 1.505E-52 24631 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 307.03 299.29 7054200000 121080000 119940000 112140000 0 0 0 781910000 721620000 675990000 2613900 0 1100300 753430000 714410000 737550000 4187000 3089400 2586500 862620000 718030000 721870000 0 0 0 10212 239 9945 190631;190632;190633;190634;190635;190636;190637;190638;190639;190640;190641;190642;190643;190644;190645;190646;190647;190648;190649;190650;190651;190652;190653;190654;190655;190656;190657;190658;190659;190660;190661;190662;190663;190664;190665;190666;190667;190668;190669;190670;190671;190672;190673;190674;190675;190676;190677;190678;190679;190680;190681;190682 117731;117732;117733;117734;117735;117736;117737;117738;117739;117740;117741;117742;117743;117744;117745;117746;117747;117748;117749;117750;117751;117752;117753;117754;117755;117756;117757;117758;117759;117760;117761;117762;117763;117764;117765;117766;117767;117768;117769;117770;117771;117772;117773;117774;117775;117776;117777;117778;117779;117780 117738 46 IPIVGDEHADMEK Unmodified 1452.6919 0.69187967 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.847 22.318 2;3 8.091E-09 9078 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 164.33 153.81 1217100000 90142000 92167000 92853000 0 0 0 105340000 117870000 97388000 0 0 0 107580000 82716000 92257000 0 0 0 109120000 111360000 118350000 0 0 0 10213 158 9946 190683;190684;190685;190686;190687;190688;190689;190690;190691;190692;190693;190694;190695;190696;190697;190698;190699;190700;190701;190702;190703;190704;190705;190706 117781;117782;117783;117784;117785;117786;117787;117788;117789;117790;117791;117792;117793;117794;117795;117796;117797;117798;117799;117800;117801 117801 21 IPKPPSQAVYEVFK Unmodified 1601.8817 0.88172935 1163 P19934 tolA Protein TolA yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 33.282 31.658 3 0.087199 12696 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 21.814 19.602 36478000 0 4462100 0 1313300 763200 0 0 0 0 2803100 0 0 3517200 3896700 0 0 0 0 8345500 8703200 0 0 2673800 0 10214 1163 9947 190707;190708;190709;190710;190711;190712;190713;190714;190715 117802 117802 1 IPLASLK Unmodified 740.47963 0.47962569 472 P0A8Y3 yihX Alpha-D-glucose-1-phosphate phosphatase YihX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.877 23.069 2 0.0017267 10247 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.89 44.51 1006700000 100090000 92488000 91206000 915180 0 0 101210000 106760000 104430000 5166300 3918300 5309300 58507000 54275000 49352000 6532200 4816400 4770400 66141000 68138000 63894000 6592600 7359900 4780000 10215 472 9948 190716;190717;190718;190719;190720;190721;190722;190723;190724;190725;190726;190727;190728;190729;190730;190731;190732;190733;190734;190735;190736;190737 117803;117804;117805;117806;117807;117808;117809;117810;117811;117812 117804 10 IPLDADLR Unmodified 911.50763 0.50763136 469 P0A8X0 yjgA UPF0307 protein YjgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.948 26.801 2 0.015132 12105 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.69 40.27 185580000 30379000 30936000 29757000 0 0 0 10061000 9944600 10346000 0 0 0 8360400 8264400 8651900 0 0 0 14095000 13876000 10908000 0 0 0 10216 469 9949 190738;190739;190740;190741;190742;190743;190744;190745;190746;190747;190748;190749 117813;117814;117815;117816 117815 4 IPLFFAYDVLHGQR Unmodified 1674.8882 0.88821171 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 1 2 1 2 2 2 51.124 49.843 2;3 1.1694E-06 24200 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.29 104.75 950880000 52005000 43858000 46243000 0 861010 1024100 89828000 99682000 102400000 0 1462300 0 53170000 70027000 58310000 0 0 0 120370000 106560000 105070000 0 0 0 10217 1421 9950 190750;190751;190752;190753;190754;190755;190756;190757;190758;190759;190760;190761;190762;190763;190764;190765;190766;190767;190768;190769;190770;190771 117817;117818;117819;117820;117821;117822;117823;117824;117825;117826;117827;117828;117829;117830;117831 117824 12 IPLIIGR Unmodified 780.52216 0.52215921 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.057 31.596 2 1.2867E-05 15447 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.07 79.349 9498700000 1410800000 1190200000 1094200000 10701000 11364000 8916600 754980000 609280000 569880000 5988200 5251800 7185400 366290000 350080000 403990000 5048100 3445000 3267100 988050000 926210000 741010000 10747000 11860000 10079000 10218 1444 9951 190772;190773;190774;190775;190776;190777;190778;190779;190780;190781;190782;190783;190784;190785;190786;190787;190788;190789;190790;190791;190792;190793;190794;190795 117832;117833;117834;117835;117836;117837;117838;117839;117840;117841;117842;117843;117844;117845;117846;117847;117848;117849;117850;117851;117852;117853;117854;117855;117856;117857;117858;117859;117860;117861 117836 30 IPLLIHQPSYNLLNR Unmodified 1790.0203 0.020288517 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 41.033 39.358 3 3.2587E-06 19240 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.942 98.63 1019600000 248270000 243070000 216490000 0 0 0 80896000 74142000 75158000 0 0 0 26855000 27842000 26923000 0 0 0 0 0 0 0 0 0 10219 1958 9952 190796;190797;190798;190799;190800;190801;190802;190803;190804 117862;117863;117864 117862 3 IPLSDGSVR Unmodified 942.51345 0.51344502 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.31 18.925 2 1.5514E-05 7260 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 159.2 138.04 685780000 98813000 73400000 74781000 0 0 0 67943000 76462000 58419000 0 0 0 31366000 27325000 25773000 0 0 0 50478000 49970000 51048000 0 0 0 10220 507 9953 190805;190806;190807;190808;190809;190810;190811;190812;190813;190814;190815;190816 117865;117866;117867;117868;117869;117870;117871;117872;117873;117874;117875;117876 117866 12 IPNPTWTPTAGIR Unmodified 1422.7619 0.76194857 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.586 33.954 2 4.6233E-07 16067 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.37 141.06 1098300000 147340000 134420000 149590000 1708500 1814300 0 183980000 160800000 163020000 0 2328600 0 27226000 25368000 27704000 0 0 0 24371000 22262000 26348000 0 0 0 10221 1831 9954 190817;190818;190819;190820;190821;190822;190823;190824;190825;190826;190827;190828;190829;190830;190831 117877;117878 117878 2 IPPELLQQHLEYVK Unmodified 1705.9403 0.94030686 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.733 33.037 3 1.9276E-06 12818 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 116.19 105.24 138390000 5272300 5313900 4374200 0 0 1440800 17874000 18386000 19388000 7763500 7878100 8286000 7222600 6718200 5651300 0 0 0 8179700 7160800 2991700 0 2172400 2321600 10222 1476 9955 190832;190833;190834;190835;190836;190837;190838;190839;190840;190841;190842;190843;190844;190845;190846;190847;190848;190849 117879;117880;117881;117882;117883;117884;117885;117886;117887;117888;117889 117881 7 IPPEVLTSLNSIDDPAR Unmodified 1835.9629 0.9628928 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 46.437 45.091 2;3 8.614E-14 21089 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 196.57 145.48 432040000 29325000 27900000 23120000 1961500 740500 993770 37776000 32010000 30740000 3494900 10682000 7353700 27747000 23980000 21367000 22096000 19019000 14259000 29951000 29394000 29899000 5247600 2984300 0 10223 536 9956 190850;190851;190852;190853;190854;190855;190856;190857;190858;190859;190860;190861;190862;190863;190864;190865;190866;190867;190868;190869;190870;190871;190872;190873;190874;190875;190876;190877;190878;190879;190880;190881;190882;190883;190884;190885;190886;190887;190888;190889;190890;190891;190892 117890;117891;117892;117893;117894;117895;117896;117897;117898;117899;117900;117901;117902;117903;117904;117905;117906;117907;117908;117909;117910;117911;117912;117913;117914;117915;117916;117917;117918;117919;117920;117921;117922;117923 117921 32 IPQESGGTK Unmodified 915.46616 0.46616048 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.493 11.082 2 3.1513E-05 2545 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.78 98.338 28015000000 180390000 183240000 160260000 5172200 1240900 2037300 247610000 227120000 215670000 1790400000 1672200000 1795900000 170160000 152540000 192010000 3680300000 4617800000 5651100000 301460000 257340000 233600000 2403300000 1921200000 1953300000 10224 458 9957 190893;190894;190895;190896;190897;190898;190899;190900;190901;190902;190903;190904;190905;190906;190907;190908;190909;190910;190911;190912;190913;190914;190915;190916 117924;117925;117926;117927;117928;117929;117930;117931;117932;117933;117934;117935;117936;117937;117938;117939;117940;117941;117942;117943;117944;117945;117946;117947;117948 117932 25 IPQESGGTKDITGGLPR Unmodified 1724.9057 0.90571227 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 21.468 21.181 3 4.5393E-05 6461 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 82.007 75.569 40784000 0 0 0 0 0 0 0 0 0 0 3671400 3147800 0 0 0 8325300 8383600 9753300 0 0 0 7502300 0 0 10225 458 9958 190917;190918;190919;190920;190921;190922 117949;117950;117951;117952 117949 4 IPQFGQQTPMK Unmodified 1273.6489 0.64889264 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.682 24.61 2 9.2163E-08 10994 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 173.75 170.18 716530000 169220000 176090000 161240000 0 0 0 58029000 51415000 49526000 0 0 0 7350800 6163200 5653500 0 0 0 11091000 10092000 10670000 0 0 0 10226 995 9959 190923;190924;190925;190926;190927;190928;190929;190930;190931;190932;190933;190934 117953;117954;117955;117956;117957;117958;117959;117960;117961;117962;117963 117959 11 IPQGGETR Unmodified 856.44028 0.44028008 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By MS/MS 1 10.468 11.422 2 0.14751 2519 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 49.325 0.26699 54552000 0 0 0 0 0 0 0 0 0 0 0 0 54552000 0 0 0 0 0 0 0 0 0 0 0 10227 90 9960 190935 117964 117964 0 IPSINVSK Unmodified 856.50182 0.5018177 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 2 2 2 2 2 2 1 1 2 1 1 1 1 1 1 1 1 1 20.528 20.669 2 0.00081084 8044 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.18 75.806 6567300000 361090000 353570000 327210000 10702000 10688000 10029000 778590000 734680000 744630000 21432000 16119000 15774000 557040000 555080000 439470000 3708600 2646900 3466700 555900000 519850000 516840000 9561800 9314100 9926500 10228 1184 9961 190936;190937;190938;190939;190940;190941;190942;190943;190944;190945;190946;190947;190948;190949;190950;190951;190952;190953;190954;190955;190956;190957;190958;190959;190960;190961;190962;190963;190964;190965;190966;190967;190968;190969 117965;117966;117967;117968 117966 4 IPSSVWK Unmodified 815.45414 0.45413923 724 P0ACE3 hha Hemolysin expression-modulating protein Hha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.742 21.747 2 0.015808 9224 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 81.381 47.643 214440000 23827000 17264000 16339000 0 0 297370 17204000 16813000 18045000 0 0 1382400 10913000 11738000 8202100 858420 0 0 25064000 22863000 23630000 0 0 0 10229 724 9962 190970;190971;190972;190973;190974;190975;190976;190977;190978;190979;190980;190981;190982;190983;190984 117969;117970;117971;117972;117973;117974;117975;117976;117977;117978;117979 117970 11 IPTAEYQNFTEVEPALAYLR Unmodified 2324.1689 0.16886283 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 52.91 51.518 2 1.7584E-37 25190 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 305.69 300.97 53070000 18800000 17893000 14119000 0 0 0 0 0 0 0 0 0 0 2258600 0 0 0 0 0 0 0 0 0 0 10230 1112 9963 190985;190986;190987;190988 117980;117981;117982 117982 3 IPTIATPVPR Unmodified 1063.639 0.63897988 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.723 28.384 2 0.00012949 13218 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 146.81 145.08 113460000 26693000 29536000 22642000 0 0 0 4691500 3449500 5036700 0 0 0 2439600 2600800 2409900 0 0 0 4138600 5482800 4340900 0 0 0 10231 1554 9964 190989;190990;190991;190992;190993;190994;190995;190996;190997;190998;190999;191000 117983;117984;117985 117983 3 IPTLEECDVCHGSGAK Unmodified 1771.7869 0.78691904 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.04 20.443 3 2.0553E-08 7877 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.41 98.675 138340000 17499000 13989000 9122300 0 0 0 0 11273000 15756000 0 1946000 0 8078500 7803800 5690800 0 0 0 17133000 15762000 14283000 0 0 0 10232 190 9965 191001;191002;191003;191004;191005;191006;191007;191008;191009;191010;191011;191012 117986;117987 117986 1 IPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMR Unmodified 3979.7492 0.74919346 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 1 2 2 2 1 1 1 2 1 2 1 1 2 2 2 2 20.537 20.648 4;5 2.6086E-18 8142 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.25 133.25 625600000 52190000 52210000 45201000 14431000 9317100 12234000 28445000 31396000 0 62537000 47732000 50633000 13991000 16285000 11955000 7871300 9020700 6818900 7701600 44594000 46142000 18674000 21040000 15178000 10233 190 9966 191013;191014;191015;191016;191017;191018;191019;191020;191021;191022;191023;191024;191025;191026;191027;191028;191029;191030;191031;191032;191033;191034;191035;191036;191037;191038;191039;191040;191041;191042;191043;191044;191045;191046;191047;191048;191049 117988;117989;117990;117991;117992;117993;117994;117995;117996;117997;117998;117999;118000;118001;118002;118003;118004;118005;118006;118007;118008;118009;118010;118011;118012;118013;118014;118015 118007 28 IPVAYLTNK Unmodified 1017.5859 0.58588168 1515 P39199 prmB 50S ribosomal protein L3 glutamine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.58 25.479 2 9.3516E-08 11769 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 184.89 164.23 1602100000 145310000 141510000 131580000 10565000 9178000 8765900 103180000 103160000 97918000 14956000 11425000 12911000 121080000 119190000 106510000 4106800 2342600 3148300 138810000 144750000 133730000 11491000 13449000 13060000 10234 1515 9967 191050;191051;191052;191053;191054;191055;191056;191057;191058;191059;191060;191061;191062;191063;191064;191065;191066;191067;191068;191069;191070;191071;191072;191073 118016;118017;118018;118019;118020;118021;118022;118023;118024;118025;118026;118027;118028;118029;118030 118020 15 IPVCGLVSSYNATELPPGPDR Unmodified 2241.11 0.10996774 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 43.691 41.987 2 0.084709 20438 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 41.542 36.558 28475000 8496300 5268200 0 0 0 0 4261600 5667900 4781300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10235 1817 9968 191074;191075;191076;191077;191078 118031 118031 0 IPVCMHNVEETK Unmodified 1455.685 0.68502015 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.424 17.201 3 0.00010921 6035 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.719 82.217 274680000 39983000 35659000 33855000 0 0 0 24189000 22906000 20715000 0 0 0 15871000 14787000 15844000 0 0 0 17187000 18932000 14752000 0 0 0 10236 1758 9969 191079;191080;191081;191082;191083;191084;191085;191086;191087;191088;191089;191090 118032;118033;118034;118035;118036;118037;118038;118039 118036 8 IPVGHVEAGLR Unmodified 1146.6509 0.65094155 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 17.722 18.388 2;3 0.00052127 6405 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 82.171 74.525 570620000 28029000 26241000 24092000 0 0 0 49873000 55054000 52838000 0 0 0 46864000 43882000 52409000 0 0 0 72403000 63069000 55871000 0 0 0 10237 1306 9970 191091;191092;191093;191094;191095;191096;191097;191098;191099;191100;191101;191102;191103;191104;191105;191106;191107;191108;191109;191110;191111;191112;191113;191114 118040;118041;118042;118043;118044;118045;118046;118047;118048;118049;118050;118051;118052;118053 118051 14 IPVHMIETINK Oxidation (M) 1309.7064 0.70640752 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 6 6 6 1 2 19.563 19.576 2;3 1.4429E-05 4947 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 145.72 145.72 469650000 0 0 0 0 0 0 0 3601400 6090400 0 0 0 0 0 0 177110000 138610000 135580000 3426800 5234100 0 0 0 0 10238 36 9971 191115;191116;191117;191118;191119;191120;191121;191122;191123;191124;191125;191126;191127;191128;191129;191130;191131;191132;191133;191134;191135;191136;191137;191138 118054;118055;118056;118057;118058;118059;118060;118061;118062;118063;118064;118065;118066;118067;118068;118069;118070;118071 118055 17 18 IPVHMIETINK Unmodified 1293.7115 0.7114929 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 24.358 23.452 2;3 1.2785E-10 7424 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 234.81 215.03 21410000000 229320000 261040000 295680000 9556100 9081800 8564300 316830000 317190000 292340000 40912000 35458000 37323000 268320000 254780000 256630000 7121300000 5256500000 5079900000 398190000 422740000 376890000 41591000 38894000 41352000 10239 36 9971 191139;191140;191141;191142;191143;191144;191145;191146;191147;191148;191149;191150;191151;191152;191153;191154;191155;191156;191157;191158;191159;191160;191161;191162;191163;191164;191165;191166;191167;191168;191169;191170;191171;191172;191173;191174;191175;191176;191177;191178;191179;191180;191181;191182;191183;191184;191185;191186 118072;118073;118074;118075;118076;118077;118078;118079;118080;118081;118082;118083;118084;118085;118086;118087;118088;118089;118090;118091;118092;118093;118094;118095;118096;118097;118098;118099;118100;118101;118102;118103;118104;118105;118106;118107;118108;118109;118110;118111;118112;118113;118114;118115;118116 118073 45 IPVHMIETINKLNR Unmodified 1676.9396 0.93959536 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 4 4 4 25.685 25.707 2;3;4 1.642E-11 8076 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 173.19 168.95 2192800000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 874030000 605440000 713380000 0 0 0 0 0 0 10240 36 9972 191187;191188;191189;191190;191191;191192;191193;191194;191195;191196;191197;191198 118117;118118;118119;118120;118121;118122;118123;118124 118122 8 IPVHMIETINKLNR Oxidation (M) 1692.9345 0.93450998 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 1 By MS/MS By MS/MS By MS/MS 2 2 2 25.691 25.713 3;4 0.00019441 8112 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 77.078 72.687 61737000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24716000 18895000 18126000 0 0 0 0 0 0 10241 36 9972 191199;191200;191201;191202;191203;191204 118125;118126;118127;118128;118129 118129 17 5 IPVIAGTGANATAEAISLTQR Unmodified 2053.1168 0.11676768 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 44.051 42.536 2;3 7.4473E-53 21167 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 341.07 316.06 3793600000 325710000 318650000 286730000 0 0 0 326530000 289650000 303700000 0 0 0 314890000 316300000 328450000 0 0 0 299520000 359020000 324470000 0 0 0 10242 258 9973 191205;191206;191207;191208;191209;191210;191211;191212;191213;191214;191215;191216;191217;191218;191219;191220;191221;191222;191223;191224;191225;191226;191227;191228 118130;118131;118132;118133;118134;118135;118136;118137;118138;118139;118140;118141;118142;118143;118144;118145;118146;118147;118148;118149;118150;118151;118152;118153 118130 24 IPVQYLANLLTAGDTKPVLR Unmodified 2181.2521 0.25213895 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 2 2 1 1 2 2 1 1 1 2 2 2 2 2 2 52.239 51.048 3;4 2.3173E-23 24657 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 187.75 187.75 2000000000 20687000 23296000 22132000 8723100 14002000 10299000 76502000 79883000 79864000 67074000 63222000 45915000 60728000 66773000 84089000 22867000 20369000 18667000 153160000 139120000 134590000 318180000 251140000 218690000 10243 1067 9974 191229;191230;191231;191232;191233;191234;191235;191236;191237;191238;191239;191240;191241;191242;191243;191244;191245;191246;191247;191248;191249;191250;191251;191252;191253;191254;191255;191256;191257;191258;191259;191260;191261;191262;191263 118154;118155;118156;118157;118158;118159;118160;118161;118162;118163;118164;118165;118166;118167;118168;118169;118170;118171;118172;118173;118174;118175;118176;118177;118178;118179;118180 118171 27 IPVTLVEDNA Unmodified 1069.5655 0.56554017 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 38.687 37.554 2 0.042931 18236 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 56.547 52.137 179130000 14075000 0 0 0 0 0 0 0 0 0 0 0 31331000 28230000 0 1582900 0 950490 34317000 36839000 31801000 0 0 0 10244 180 9975 191264;191265;191266;191267;191268;191269;191270;191271 118181 118181 0 IPVVSSPK Unmodified 825.496 0.49600404 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.679 17.247 2 0.0019937 5676 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 104.21 65.39 4987600000 629600000 696030000 576690000 1612100 2847200 2680800 433540000 398150000 349370000 3461400 1973800 0 290530000 273730000 214090000 2305200 1334700 1127800 344420000 388560000 375540000 0 0 0 10245 508 9976 191272;191273;191274;191275;191276;191277;191278;191279;191280;191281;191282;191283;191284;191285;191286;191287;191288;191289;191290;191291 118182;118183;118184;118185;118186;118187;118188;118189;118190;118191;118192;118193;118194;118195;118196 118195 15 IPVVWIHGLECTCCTESFIR Unmodified 2476.1701 0.17014193 1738 P69739 hyaA Hydrogenase-1 small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 48.807 47.057 3 9.4965E-15 23147 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.1 138.39 93176000 0 0 0 0 0 0 22881000 23411000 20101000 9113100 9287900 8382100 0 0 0 0 0 0 0 0 0 0 0 0 10246 1738 9977 191292;191293;191294;191295;191296;191297 118197;118198;118199 118199 3 IPVWEEFVPR Unmodified 1270.671 0.67100829 855 P0AEF8 dppB Dipeptide transport system permease protein DppB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.472 50.182 2 1.8844E-05 24617 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.05 145.44 70836000 19659000 20591000 21095000 1681300 1561900 1812000 2173000 2262700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10247 855 9978 191298;191299;191300;191301;191302;191303;191304;191305 118200;118201;118202 118200 3 IPYIISIAGSVAVGK Unmodified 1486.8759 0.87591569 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 51.738 50.466 2 0.05071 24563 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 45.257 41.494 37152000 3488900 0 0 0 0 0 5662100 4926000 3674100 0 0 0 3006600 2596700 2733100 0 0 0 4080800 6983200 0 0 0 0 10248 248 9979 191306;191307;191308;191309;191310;191311;191312;191313;191314 118203 118203 0 IPYVESFPTGTPQSPYGK Unmodified 1966.9676 0.96764382 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.597 38.906 2 6.5805E-37 18774 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 243.11 237.93 198710000 53672000 52272000 48702000 0 0 0 10280000 11249000 11452000 0 0 0 0 3929500 2797200 0 0 0 0 4350900 0 0 0 0 10249 202 9980 191315;191316;191317;191318;191319;191320;191321;191322;191323 118204;118205;118206;118207 118207 4 IQAALDEWHR Unmodified 1237.6204 0.62036971 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 22.754 22.384 3 8.2527E-07 9360 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.16 140.16 544030000 163740000 203400000 176890000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10250 1465 9981 191324;191325;191326;191327;191328;191329 118208;118209;118210;118211;118212;118213 118211 6 IQAEHYSLLK Unmodified 1200.6503 0.65027285 760 P0AD01 dcuR Transcriptional regulatory protein DcuR yes yes 0 0 0 By MS/MS By MS/MS 1 1 19.499 19.482 3 0.0018175 5665 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 57.347 32.652 17225000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8528300 8696400 0 0 0 0 0 0 10251 760 9982 191330;191331 118214;118215 118215 2 IQAIIEDIK Unmodified 1041.607 0.60701105 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.391 30.006 2 0.00035747 9900 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 112.84 82.338 1124600000 75459000 63496000 60488000 1432800 1382500 0 96690000 85490000 93963000 23726000 19259000 15804000 66585000 77880000 64081000 10351000 11068000 10383000 105180000 101440000 99144000 12685000 13766000 14833000 10252 1057 9983 191332;191333;191334;191335;191336;191337;191338;191339;191340;191341;191342;191343;191344;191345;191346;191347;191348;191349;191350;191351;191352;191353;191354 118216;118217;118218 118218 3 IQAIIEDIKER Unmodified 1326.7507 0.75071518 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 25.624 24.533 2;3 1.2446E-19 8944 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 238.32 216.86 1231700000 31249000 29275000 24091000 17144000 16488000 14841000 36435000 34261000 41387000 114750000 136420000 120730000 22982000 28480000 22355000 82712000 64235000 78561000 45044000 45451000 40730000 63245000 62053000 58809000 10253 1057 9984 191355;191356;191357;191358;191359;191360;191361;191362;191363;191364;191365;191366;191367;191368;191369;191370;191371;191372;191373;191374;191375;191376;191377;191378;191379;191380;191381;191382;191383;191384;191385;191386;191387;191388;191389;191390;191391;191392;191393;191394;191395;191396;191397;191398;191399;191400;191401;191402 118219;118220;118221;118222;118223;118224;118225;118226;118227;118228;118229;118230;118231;118232;118233;118234;118235;118236;118237;118238;118239;118240;118241;118242 118229 23 IQALAGWIAEQIGADVNHATR Unmodified 2233.1604 0.16036383 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 1 2 1 2 3 2 1 1 1 2 3 2 1 1 1 52.893 51.587 2;3 9.9103E-75 25234 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 303.36 277.24 7474600000 624850000 671170000 556110000 32095000 19266000 0 579350000 586230000 546070000 50753000 47918000 44120000 528570000 511900000 485960000 9223200 11901000 10079000 612470000 734380000 752560000 15503000 25923000 18189000 10254 62 9985 191403;191404;191405;191406;191407;191408;191409;191410;191411;191412;191413;191414;191415;191416;191417;191418;191419;191420;191421;191422;191423;191424;191425;191426;191427;191428;191429;191430;191431;191432;191433;191434;191435;191436;191437;191438;191439;191440;191441 118243;118244;118245;118246;118247;118248;118249;118250;118251;118252;118253;118254;118255;118256;118257;118258;118259;118260;118261;118262;118263;118264;118265;118266;118267;118268;118269;118270;118271;118272;118273;118274;118275;118276 118259 34 IQALESILDAEHPNWR Unmodified 1890.9588 0.95881047 957 P0AFM9 pspB Phage shock protein B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 43.854 42.285 3 1.5097E-08 20675 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.55 84.682 148410000 13221000 21112000 15653000 2320700 0 0 13138000 12851000 11615000 1324600 0 3031600 7302900 0 5831500 0 3410900 0 12565000 12394000 11391000 0 1244500 0 10255 957 9986 191442;191443;191444;191445;191446;191447;191448;191449;191450;191451;191452;191453;191454;191455;191456;191457;191458 118277;118278;118279;118280;118281;118282;118283;118284 118280 8 IQANMDPK Unmodified 915.4484 0.44840192 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.485 13.317 2 0.010215 3912 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.77 63.988 347010000 21276000 20663000 18675000 0 0 0 23172000 27063000 27876000 0 0 0 26052000 29040000 25661000 0 0 0 44859000 43801000 38869000 0 0 0 10256 346 9987 191459;191460;191461;191462;191463;191464;191465;191466;191467;191468;191469;191470 118285;118286 118285 2 IQANPLVK Unmodified 881.53345 0.53345218 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.802 19.167 2 0.0037689 5373 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 89.369 44.838 185310000 0 0 0 23136000 24943000 20406000 7363600 6926300 6929500 9077500 7793200 6204100 7926200 4377300 4312100 0 0 0 8174500 7511200 6346400 11567000 11209000 11108000 10257 1899 9988 191471;191472;191473;191474;191475;191476;191477;191478;191479;191480;191481;191482;191483;191484;191485;191486;191487;191488 118287;118288;118289;118290;118291;118292;118293;118294 118292 8 IQAQYPQEVITTVR Unmodified 1644.8835 0.88352026 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 2 2 2 2 2 1 1 2 33.296 31.866 2;3 2.6836E-14 14934 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 183.33 149.46 2026900000 241230000 209460000 208510000 3769900 7142900 3202400 158110000 142340000 153010000 3168700 3889000 3961400 127210000 109790000 105770000 0 16296000 18552000 152570000 166700000 184260000 1246900 2136300 4600200 10258 1214 9989 191489;191490;191491;191492;191493;191494;191495;191496;191497;191498;191499;191500;191501;191502;191503;191504;191505;191506;191507;191508;191509;191510;191511;191512;191513;191514;191515;191516;191517;191518;191519;191520;191521;191522;191523;191524;191525;191526;191527 118295;118296;118297;118298;118299;118300;118301;118302;118303;118304;118305;118306;118307;118308;118309;118310;118311;118312;118313 118308 19 IQASLFAPNEEEK Unmodified 1474.7304 0.73037367 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 30.385 28.956 2 1.1077E-05 13460 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 141.88 125.99 180860000 65284000 57128000 55228000 1099400 1534600 0 0 0 0 0 0 586150 0 0 0 0 0 0 0 0 0 0 0 0 10259 46 9990 191528;191529;191530;191531;191532;191533 118314;118315;118316 118315 3 IQAYPEGK Unmodified 904.46543 0.46543219 1390 P32157 yiiM Protein YiiM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 12.891 13.665 2 0.00081197 4010 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.13 114.46 195710000 31792000 31619000 30164000 0 0 0 20415000 16012000 15231000 0 0 0 0 0 0 0 0 0 16730000 19455000 14296000 0 0 0 10260 1390 9991 191534;191535;191536;191537;191538;191539;191540;191541;191542 118317;118318;118319;118320 118320 4 IQAYPEGKPSAIAK Unmodified 1471.8035 0.80347903 1390 P32157 yiiM Protein YiiM yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.454 16.26 3 0.16352 5223 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 11.279 8.1943 70416000 6281900 6422800 4963200 0 0 1226800 8107900 11445000 10452000 0 0 0 3477300 4064200 0 0 0 0 3266000 6346200 4362200 0 0 0 10261 1390 9992 191543;191544;191545;191546;191547;191548;191549;191550;191551;191552;191553;191554 118321 118321 1 IQDADYATEVSNMSK Unmodified 1670.7458 0.74576573 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 28.705 27.476 2 2.3542E-20 12687 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 216.81 215.91 393620000 132720000 128300000 115970000 4244600 6246300 6146600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10262 96 9993 191555;191556;191557;191558;191559;191560 118322;118323;118324;118325;118326;118327 118325 6 IQDAGLSQISVTNSAINNLPPDVDLVITHR Unmodified 3199.6837 0.68370483 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.842 50.524 3 4.3218E-08 20526 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 99.446 94.016 129750000 4097700 0 0 2918000 2535400 1670300 11167000 11108000 11692000 7975500 10257000 9593200 8835900 9832300 8883900 0 0 0 8196800 8876900 9039400 0 0 3067200 10263 33 9994 191561;191562;191563;191564;191565;191566;191567;191568;191569;191570;191571;191572;191573;191574;191575;191576;191577 118328;118329;118330;118331 118328 4 IQDATMTHDDLHFVDR Unmodified 1912.8738 0.87376021 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 1 1 25.003 23.897 3;4 2.0221E-08 10569 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 112.8 108.56 500630000 42141000 25359000 34573000 0 0 0 39889000 43494000 38699000 6040100 3777400 5569300 32944000 34918000 28262000 0 1740500 0 60598000 43768000 47471000 5125900 3054800 3210500 10264 1617 9995 191578;191579;191580;191581;191582;191583;191584;191585;191586;191587;191588;191589;191590;191591;191592;191593;191594;191595;191596;191597;191598;191599;191600;191601;191602;191603;191604;191605;191606;191607;191608;191609;191610 118332;118333;118334;118335;118336;118337;118338;118339;118340;118341;118342 118336 11 IQDLTER Unmodified 873.4556 0.45559579 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 13.59 14.426 2 8.6444E-05 4533 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.84 49.666 807630000 0 162400000 137720000 3013600 997530 1789200 178730000 159250000 0 0 0 1738100 162000000 0 0 0 0 0 0 0 0 0 0 0 10265 149 9996 191611;191612;191613;191614;191615;191616;191617;191618;191619;191620;191621 118343;118344;118345;118346;118347 118346 5 IQDWYDK Unmodified 966.4447 0.44469675 16 CON__P35527 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.735 21.575 2 0.0021628 7225 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 117.16 117.16 210930000 0 4832900 0 1280100 923910 1854000 0 6163600 0 63848000 54579000 26770000 0 0 0 1765700 1587700 1558600 0 5552300 0 8421800 16148000 15647000 + 10266 16 9997 191622;191623;191624;191625;191626;191627;191628;191629;191630;191631;191632;191633;191634;191635;191636 118348;118349;118350;118351;118352;118353 118349 6 IQDWYDKK Unmodified 1094.5397 0.53965977 16 CON__P35527 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 15.641 15.993 2;3 0.00049925 4531 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 141.39 119.26 623790000 0 0 0 4704600 4717200 6874400 0 0 0 185600000 153710000 140000000 0 0 0 0 0 0 0 0 0 49357000 39597000 39237000 + 10267 16 9998 191637;191638;191639;191640;191641;191642;191643;191644;191645;191646;191647;191648;191649;191650;191651;191652 118354;118355;118356;118357;118358;118359;118360;118361;118362;118363;118364;118365;118366;118367;118368 118355 15 IQEIHIK Unmodified 879.5178 0.51780212 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.96 14.651 2 0.0017574 4675 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.34 95.814 1599100000 195650000 168550000 156990000 1159100 997110 1123300 136870000 143710000 141760000 1787000 1664500 1410100 108820000 109780000 91852000 1027600 0 316670 123070000 100880000 111720000 0 0 0 10268 1658 9999 191653;191654;191655;191656;191657;191658;191659;191660;191661;191662;191663;191664;191665;191666;191667;191668;191669;191670;191671;191672 118369;118370;118371;118372;118373;118374;118375;118376;118377;118378;118379;118380 118376 12 IQELAQNIHK Unmodified 1192.6564 0.65642086 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 13.821 14.507 2;3 0.00023454 4573 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.044 76.648 715360000 0 4640500 0 1010000 0 0 161140000 156050000 152440000 1440200 1862900 2007300 78493000 75423000 71319000 895710 0 1067500 3116300 4453000 0 0 0 0 10269 520 10000 191673;191674;191675;191676;191677;191678;191679;191680;191681;191682;191683;191684;191685;191686;191687;191688;191689;191690;191691;191692;191693 118381;118382;118383;118384;118385 118382 4 IQELPGIFAQALSTAK Unmodified 1685.9352 0.93522148 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 2 2 2 52.165 50.968 2;3 2.7155E-09 25038 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.6 85.265 2358000000 212650000 226700000 197350000 0 0 1846200 195200000 207090000 187310000 0 0 0 162970000 157980000 154150000 1208200 0 0 227340000 211120000 215060000 0 0 0 10270 688 10001 191694;191695;191696;191697;191698;191699;191700;191701;191702;191703;191704;191705;191706;191707;191708;191709;191710;191711;191712;191713;191714;191715;191716;191717;191718;191719 118386;118387;118388;118389;118390;118391;118392;118393;118394;118395;118396;118397;118398;118399;118400;118401;118402;118403;118404;118405;118406 118396 21 IQFEQAK Unmodified 862.45487 0.45486751 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.936 15.56 2 0.0053367 4336 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 100.07 73.957 458240000 21993000 24691000 29765000 0 1012000 1173200 34587000 41889000 38819000 6861400 5798100 6726400 26526000 25963000 29860000 0 0 0 52662000 52920000 46294000 5528000 0 5173000 10271 1197 10002 191720;191721;191722;191723;191724;191725;191726;191727;191728;191729;191730;191731;191732;191733;191734;191735;191736;191737;191738;191739 118407;118408;118409 118408 3 IQFFVAVYQHLR Unmodified 1519.83 0.82996855 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.218 43.565 3 0.00012306 17492 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 71.555 70.766 34017000 4261400 1360700 0 498010 778950 738100 0 0 0 0 4144700 4187400 0 0 0 0 0 0 3379200 3347000 3420600 2104500 3157000 2639900 10272 1197 10003 191740;191741;191742;191743;191744;191745;191746;191747;191748;191749;191750;191751;191752;191753 118410;118411 118411 2 IQFVMCDDGSLK Unmodified 1411.6476 0.64757201 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 36.949 35.168 2 0.00010708 16996 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 92.428 85.759 66650000 0 0 0 0 0 0 0 7113900 0 0 0 0 12712000 0 0 0 0 0 15339000 16041000 13829000 795820 0 818950 10273 1445 10004 191754;191755;191756;191757;191758;191759;191760 118412;118413;118414 118412 3 IQFVMCDDGSLKR Unmodified 1567.7487 0.74868304 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.824 27.498 3 2.1515E-05 12943 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 82.202 80.351 230650000 25075000 0 23589000 0 0 0 21772000 17499000 16836000 2301300 2051600 2171800 0 22555000 0 5866400 6062700 7047400 26709000 3019900 28275000 7225500 5351400 7240800 10274 1445 10005 191761;191762;191763;191764;191765;191766;191767;191768;191769;191770;191771;191772;191773;191774;191775;191776;191777;191778 118415;118416;118417;118418;118419 118415 5 IQGIGAGFIPANLDLK Unmodified 1625.9141 0.91409211 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 51.054 49.762 2;3 2.6633E-13 24155 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 158.01 143.33 22082000000 1939200000 1769700000 1848100000 19676000 21136000 20391000 2320500000 2315900000 2200200000 12964000 12318000 11761000 1237800000 1465600000 1230100000 0 0 0 1990700000 1872500000 1774500000 7403800 6125500 5352500 10275 666 10006 191779;191780;191781;191782;191783;191784;191785;191786;191787;191788;191789;191790;191791;191792;191793;191794;191795;191796;191797;191798;191799;191800;191801;191802;191803;191804;191805;191806;191807;191808;191809;191810;191811;191812 118420;118421;118422;118423;118424;118425;118426;118427;118428;118429;118430;118431;118432;118433;118434;118435;118436;118437;118438;118439;118440;118441;118442;118443;118444;118445;118446;118447;118448;118449;118450 118431 31 IQGQSDSPLTAK Unmodified 1243.6408 0.64083038 322 P0A7A2 gpmB Probable phosphoglycerate mutase GpmB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.025 15.73 2 2.1422E-07 5218 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 156.48 144.24 303620000 34092000 27890000 22878000 0 0 0 21267000 21996000 20179000 0 0 0 24435000 21143000 23284000 0 0 0 28436000 28960000 25223000 1991700 1842700 0 10276 322 10007 191813;191814;191815;191816;191817;191818;191819;191820;191821;191822;191823;191824;191825;191826 118451;118452;118453;118454;118455;118456;118457;118458;118459;118460;118461 118456 11 IQGQSGHSSDPAR Unmodified 1338.6276 0.62763993 1229 P23908 argE Acetylornithine deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5.7839 6.6424 2 4.0444E-07 1564 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 162.38 157.39 56608000 9394500 10341000 9893200 0 0 0 0 0 0 0 0 0 4237400 3521800 4449800 0 0 0 5268000 4777900 4724000 0 0 0 10277 1229 10008 191827;191828;191829;191830;191831;191832;191833;191834;191835 118462;118463;118464;118465;118466;118467;118468;118469;118470 118467 9 IQGVIQAR Unmodified 883.52395 0.52395013 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.231 16.074 2 0.00028039 5185 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 148.21 70.458 425740000 49575000 57261000 64571000 1614400 1366500 1514400 38060000 32889000 36090000 0 0 0 22857000 18573000 20246000 0 0 0 28655000 24320000 28143000 0 0 0 10278 1632 10009 191836;191837;191838;191839;191840;191841;191842;191843;191844;191845;191846;191847;191848;191849;191850 118471;118472;118473;118474;118475;118476;118477;118478;118479;118480 118478 10 IQGVIQARESK Unmodified 1227.6935 0.69353465 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 22.46 21.896 2 0.063379 7221 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 51.346 6.2644 50746000 2529500 0 0 8695400 10449000 7000900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7440400 7082500 7548500 10279 1632 10010 191851;191852;191853;191854;191855;191856;191857 118481;118482 118481 2 IQGWNVAMGASGTIK Unmodified 1531.7817 0.78169773 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 36.431 35.028 2 0.011604 16280 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 55.261 51.616 20377000 6676600 0 0 0 0 0 0 0 0 0 0 0 4606700 5506200 3587300 0 0 0 0 0 0 0 0 0 10280 953 10011 191858;191859;191860;191861 118483 118483 1 IQHLGYSWLYGTFK Unmodified 1711.8722 0.8722273 470 P0A8X2 yceI Protein YceI yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 42.139 40.599 3 1.0122E-05 19742 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.264 89.947 169090000 62147000 54253000 52694000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10281 470 10012 191862;191863;191864 118484 118484 1 IQIAEQSQLAPASVTK Unmodified 1682.9203 0.9202997 905 P0AF20 nagC N-acetylglucosamine repressor yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 29.249 28.112 2 4.4872E-06 12998 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.14 92.449 29268000 6717000 6998000 5223400 0 0 0 0 0 3469600 0 0 0 3076100 3784300 0 0 0 0 0 0 0 0 0 0 10282 905 10013 191865;191866;191867;191868;191869;191870 118485 118485 1 IQIVFQNPYGSLNPR Unmodified 1744.9261 0.92605378 1463 P37313 dppF Dipeptide transport ATP-binding protein DppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 45.094 43.715 2 1.1527E-08 21211 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 186.74 149.18 46136000 13686000 12153000 10830000 2954100 3749300 2763600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10283 1463 10014 191871;191872;191873;191874;191875;191876 118486;118487;118488;118489;118490;118491 118490 6 IQLGPFASK Unmodified 959.54402 0.54401687 1051 P10100 rlpA Rare lipoprotein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.427 32.026 2 0.00040242 15277 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.17 92.437 59615000 8230200 8226800 7100000 0 792470 1171900 0 0 0 2156900 1186000 2610800 0 0 0 1178200 1005900 1020800 6221700 6356100 8827900 1680300 1848500 0 10284 1051 10015 191877;191878;191879;191880;191881;191882;191883;191884;191885;191886;191887;191888;191889;191890;191891;191892 118492;118493;118494;118495;118496 118494 5 IQLTDAIAELAK Unmodified 1284.7289 0.7289171 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.437 49.211 2 1.7974E-06 23879 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.11 130.96 3638900000 177100000 162470000 165500000 6880100 7359700 6204400 307680000 326480000 315200000 8219600 8103800 7754400 345930000 285380000 312610000 7646100 4029200 6900500 386350000 386270000 380950000 7500600 7623000 8735700 10285 583 10016 191893;191894;191895;191896;191897;191898;191899;191900;191901;191902;191903;191904;191905;191906;191907;191908;191909;191910;191911;191912;191913;191914;191915;191916 118497;118498;118499;118500;118501;118502;118503;118504;118505;118506;118507;118508;118509;118510;118511;118512;118513;118514;118515;118516;118517;118518;118519;118520 118510 24 IQLTIGAGQSTFGGK Unmodified 1476.7936 0.79364262 1439 P36649 cueO Blue copper oxidase CueO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.425 33.868 2 5.7405E-20 16188 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 203.83 200.33 214950000 21846000 16890000 21164000 0 0 0 15395000 15630000 19080000 0 0 0 12560000 14214000 14107000 0 0 0 23745000 19309000 21008000 0 0 0 10286 1439 10017 191917;191918;191919;191920;191921;191922;191923;191924;191925;191926;191927;191928 118521;118522;118523;118524;118525;118526;118527;118528;118529;118530;118531;118532 118528 12 IQLVGDDLFVTNTK Unmodified 1561.8352 0.83517309 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 2 2 2 3 1 1 1 2 2 2 3 2 2 1 1 45.721 44.175 2;3 1.5723E-14 20624 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 191.52 153.82 42924000000 3152100000 2870400000 81867000 10190000 13145000 11611000 5123700000 4944700000 4742900000 12880000 10854000 8603000 3685500000 3671700000 3214500000 0 0 0 3793000000 3905500000 3663400000 5634300 2092600 0 10287 270 10018 191929;191930;191931;191932;191933;191934;191935;191936;191937;191938;191939;191940;191941;191942;191943;191944;191945;191946;191947;191948;191949;191950;191951;191952;191953;191954;191955;191956;191957;191958;191959;191960;191961;191962;191963;191964;191965;191966 118533;118534;118535;118536;118537;118538;118539;118540;118541;118542;118543;118544;118545;118546;118547;118548;118549;118550;118551;118552;118553;118554;118555;118556;118557;118558;118559;118560;118561;118562;118563;118564;118565;118566;118567;118568;118569;118570;118571;118572;118573;118574;118575;118576;118577;118578;118579 118577 45 IQLYVAR Unmodified 861.50724 0.50723743 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.144 24.022 2 0.001325 10898 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.01 73.344 1188400000 102190000 117650000 100330000 0 0 0 157730000 156950000 131000000 5764600 2804300 0 51254000 40340000 47123000 0 0 0 106640000 88695000 79899000 0 0 0 10288 448;449 10019 191967;191968;191969;191970;191971;191972;191973;191974;191975;191976;191977;191978;191979;191980 118580;118581;118582;118583;118584 118582 5 IQMACCLVATGEAATISDGLAR Unmodified 2307.1021 0.10212195 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 2 2 2 1 2 2 1 1 1 46.932 45.468 2;3 2.682E-15 22628 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 190.87 176.91 146790000 19317000 20830000 15996000 1529600 0 0 20100000 14384000 17295000 1845000 0 0 9252800 8392100 3947800 0 0 0 7940300 0 5956700 0 0 0 10289 1341 10020 191981;191982;191983;191984;191985;191986;191987;191988;191989;191990;191991;191992;191993;191994;191995;191996;191997;191998;191999;192000;192001 118585;118586;118587;118588;118589;118590 118585 5 IQMQELIK Unmodified 1001.558 0.55795237 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 30.15 28.676 2 0.00071969 13264 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 126.04 94.746 243210000 77697000 73980000 63174000 0 0 0 0 0 0 491690 875070 0 0 9078400 5863100 0 0 0 0 6024400 6023000 0 0 0 10290 225 10021 192002;192003;192004;192005;192006;192007;192008;192009;192010 118591;118592;118593;118594;118595 118593 5 IQNAGTEVVEAK Unmodified 1257.6565 0.65648044 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.982 15.773 2 9.7653E-08 5192 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.24 125.31 13436000000 2427500000 2487400000 2327800000 6745100 6025800 6245400 750830000 704940000 3522000 0 0 1524800 623990000 546980000 544090000 0 0 0 1023000000 942620000 1032600000 0 0 0 10291 1642 10022 192011;192012;192013;192014;192015;192016;192017;192018;192019;192020;192021;192022;192023;192024;192025;192026 118596;118597;118598;118599;118600;118601;118602;118603;118604;118605;118606;118607;118608;118609;118610;118611 118608 12 IQPETDDDSIGGHFLHLLHGEKPSQSWEK Unmodified 3299.5847 0.58471907 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 3 3 3 36.696 35.257 4;5;6 2.8901E-11 17085 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 123.36 113.22 751150000 287860000 235530000 227770000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10292 1374 10023 192027;192028;192029;192030;192031;192032;192033;192034;192035 118612;118613;118614;118615;118616 118613 5 IQPGYDHSYYFIASFIEDHLR Unmodified 2570.223 0.22302366 1405 P33018 yeiG S-formylglutathione hydrolase YeiG yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.258 52.81 4 0.0026607 26168 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 55.206 52.594 476380000 98038000 94433000 108060000 0 0 0 22560000 18879000 16828000 0 0 0 15116000 15278000 12425000 0 0 0 22587000 26267000 25915000 0 0 0 10293 1405 10024 192036;192037;192038;192039;192040;192041;192042;192043;192044;192045;192046;192047 118617 118617 1 IQPSGTFYDYEAK Unmodified 1517.7038 0.70382456 171 P07862 ddlB D-alanine--D-alanine ligase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 29.679 28.328 2 1.1323E-05 13102 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 117.52 88.047 266380000 0 0 0 0 0 0 30324000 32579000 27030000 0 0 0 26033000 24713000 23588000 0 0 0 36304000 35177000 30630000 0 0 0 10294 171 10025 192048;192049;192050;192051;192052;192053;192054;192055;192056 118618;118619;118620;118621;118622;118623;118624;118625;118626 118623 9 IQQAFFGLFTGETEDK Unmodified 1829.8836 0.88357984 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 0 By MS/MS 1 52.061 50.854 2 3.1575E-06 24886 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.35 99.848 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10295 636 10026 192057 118627 118627 1 IQQNSSHWQPLPEYHR Unmodified 2018.9711 0.97110649 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 20.065 20.499 3;4 2.6128E-07 7917 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.48 105.86 515080000 87184000 70315000 79011000 0 0 0 36167000 39274000 36830000 0 0 0 9642700 17563000 23145000 0 0 0 45577000 35067000 35299000 0 0 0 10296 1788 10027 192058;192059;192060;192061;192062;192063;192064;192065;192066;192067;192068;192069;192070;192071;192072;192073;192074;192075;192076;192077;192078;192079;192080 118628;118629;118630;118631;118632;118633;118634;118635;118636;118637;118638;118639;118640;118641;118642;118643 118633 16 IQQQQDIDNGTLPDFISETASIR Unmodified 2588.2718 0.27182435 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 50.913 49.655 2;3 1.2666E-53 24177 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 349.54 342.01 2543000000 705930000 551350000 550840000 4966700 4507500 0 112410000 127140000 122740000 0 0 0 52351000 49840000 52405000 0 0 0 75006000 71308000 62228000 0 0 0 10297 195 10028 192081;192082;192083;192084;192085;192086;192087;192088;192089;192090;192091;192092;192093;192094;192095;192096;192097;192098;192099;192100;192101;192102;192103;192104;192105;192106 118644;118645;118646;118647;118648;118649;118650;118651;118652;118653;118654;118655;118656;118657;118658;118659;118660;118661;118662;118663;118664;118665;118666 118650 23 IQSGELSAIPHQLIMDK Unmodified 1878.9873 0.98733341 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 3 2 2 2 3 2 2 2 1 1 1 2 2 3 1 1 1 37.723 35.995 2;3 2.2788E-40 17921 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 268.9 238.69 13286000000 1088400000 964080000 963130000 37573000 36399000 37698000 1655600000 1802500000 1638500000 66806000 78463000 74205000 867140000 717690000 769440000 20898000 24360000 19765000 804020000 777910000 747780000 30544000 29494000 33172000 10298 1046 10029 192107;192108;192109;192110;192111;192112;192113;192114;192115;192116;192117;192118;192119;192120;192121;192122;192123;192124;192125;192126;192127;192128;192129;192130;192131;192132;192133;192134;192135;192136;192137;192138;192139;192140;192141;192142;192143;192144;192145;192146;192147;192148;192149;192150;192151 118667;118668;118669;118670;118671;118672;118673;118674;118675;118676;118677;118678;118679;118680;118681;118682;118683;118684;118685;118686;118687;118688;118689;118690;118691;118692;118693;118694;118695;118696;118697;118698;118699;118700;118701;118702;118703;118704;118705;118706 118677 40 IQSGELSAIPHQLIMDK Oxidation (M) 1894.9822 0.98224803 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 1 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 35.376 33.36 3 0.0048433 16327 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 52.365 50.503 102780000 0 0 0 1284100 1260600 0 0 69083000 0 4435700 3304700 3409800 0 20006000 0 0 0 0 0 0 0 0 0 0 10299 1046 10029 192152;192153;192154;192155;192156;192157;192158 118707;118708 118707 469 2 IQSIGGIYDGHCR Unmodified 1474.6987 0.69869638 1301 P27305 gluQ Glutamyl-Q tRNA(Asp) synthetase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 20.47 20.991 3 0.00046674 8414 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 54.524 49.209 47467000 4911700 6297600 6976200 0 0 0 0 0 0 0 0 0 3889400 0 3437700 0 0 0 7563200 6873600 7517400 0 0 0 10300 1301 10030 192159;192160;192161;192162;192163;192164;192165;192166 118709;118710 118709 2 IQSLMQR Unmodified 874.46947 0.46947171 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.748 17.305 2 0.0012711 6226 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.96 84.2 228170000 15956000 14675000 12655000 584940 0 0 29254000 24282000 25228000 9613300 7113300 3770000 21928000 20594000 17964000 0 0 0 0 0 24552000 0 0 0 10301 1197 10031 192167;192168;192169;192170;192171;192172;192173;192174;192175;192176;192177;192178;192179;192180 118711;118712;118713;118714;118715;118716;118717;118718;118719 118715 9 IQTESWSPLAQGGK Unmodified 1500.7573 0.75725712 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.188 29.831 2 2.7781E-14 13967 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 182.64 168.14 1512800000 305390000 253580000 221640000 0 0 0 163940000 166400000 150850000 0 0 0 38016000 39500000 33262000 0 0 0 49378000 44772000 46042000 0 0 0 10302 1960 10032 192181;192182;192183;192184;192185;192186;192187;192188;192189;192190;192191;192192 118720;118721;118722;118723;118724;118725;118726;118727;118728 118724 9 IQTEVFR Unmodified 891.48142 0.48141661 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 20.594 20.791 2 0.0053367 5966 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 100.07 69.398 88922000 0 0 0 2645000 2703400 0 11184000 0 0 0 0 0 0 0 0 19350000 12673000 14819000 13140000 12408000 0 0 0 0 10303 1393 10033 192193;192194;192195;192196;192197;192198;192199;192200 118729;118730 118730 1 IQTGTWQGIWLGEHR Unmodified 1780.9009 0.90090166 910 P0AF48 yjbQ UPF0047 protein YjbQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.241 37.551 3 4.8051E-07 18231 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.939 88.697 132610000 26715000 29841000 27394000 0 0 0 3205600 3015000 0 0 0 619680 6616000 2198700 6928200 0 0 0 9393300 6647000 10035000 0 0 0 10304 910 10034 192201;192202;192203;192204;192205;192206;192207;192208;192209;192210;192211;192212 118731;118732;118733;118734 118733 4 IQTMDNQADR Unmodified 1190.535 0.5349851 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.032 12.848 2 2.8738E-07 3613 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 177.36 173.25 607270000 25615000 25471000 20691000 11107000 13078000 12313000 62787000 56652000 50473000 0 0 0 45150000 38394000 41626000 0 0 0 62741000 53622000 55078000 0 15724000 16752000 10305 648 10035 192213;192214;192215;192216;192217;192218;192219;192220;192221;192222;192223;192224;192225;192226;192227;192228;192229 118735;118736;118737;118738;118739;118740;118741;118742;118743;118744;118745;118746 118735 9 IQTMDNQADRFVTK Unmodified 1665.8145 0.81445442 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 21.003 20.901 3 3.822E-05 6578 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 70.68 67.375 56867000 0 0 0 5222900 5098900 7492500 0 0 0 7976400 6627500 5620000 0 0 0 0 0 0 0 0 0 6837200 5362800 6628600 10306 648 10036 192230;192231;192232;192233;192234;192235;192236;192237;192238 118747;118748;118749;118750 118750 4 IQVEHPVTEMITGVDLIK Unmodified 2021.0867 0.086713102 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 1 1 1 44.46 42.918 2;3 3.4261E-67 21034 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 303.13 268.86 4696500000 303700000 299420000 277500000 3237100 5437900 3260600 360750000 383500000 340620000 8008700 5389900 6982200 396610000 388710000 309500000 4779700 0 5969300 522850000 569140000 481700000 5718000 5920600 7812600 10307 1236 10037 192239;192240;192241;192242;192243;192244;192245;192246;192247;192248;192249;192250;192251;192252;192253;192254;192255;192256;192257;192258;192259;192260;192261;192262;192263;192264;192265;192266;192267;192268;192269;192270;192271;192272;192273;192274;192275 118751;118752;118753;118754;118755;118756;118757;118758;118759;118760;118761;118762;118763;118764;118765;118766;118767;118768;118769;118770;118771;118772;118773;118774;118775;118776;118777;118778;118779;118780;118781;118782;118783;118784;118785 118775 35 IQVGANDNQTITIDLK Unmodified 1741.921 0.92102798 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 37.79 36.186 2 0.026827 17787 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 54.343 40.085 13042000 4182500 5441600 0 1094100 1273800 1049800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10308 96 10038 192276;192277;192278;192279;192280 118786 118786 0 IQVSPTKPLATQR Unmodified 1437.8304 0.83036248 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 1 1 1 16.319 17.103 2;3 6.704E-12 5673 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 221.59 210.76 3351600000 491340000 458520000 422060000 10705000 10709000 7757000 261030000 243280000 233360000 0 0 0 166730000 172620000 181270000 0 0 0 228500000 255330000 205990000 886320 811180 696790 10309 1872 10039 192281;192282;192283;192284;192285;192286;192287;192288;192289;192290;192291;192292;192293;192294;192295;192296;192297;192298;192299;192300;192301;192302;192303;192304;192305;192306;192307;192308;192309;192310;192311 118787;118788;118789;118790;118791;118792;118793;118794;118795;118796;118797;118798;118799;118800;118801;118802;118803;118804;118805;118806;118807 118804 21 IQVTGSEGELGIYPGHAPLLTAIK Unmodified 2463.3373 0.33732514 236 P0A6E6 atpC ATP synthase epsilon chain yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.39 43.961 3 3.1212E-07 21791 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.64 102.41 419020000 12035000 12240000 9511300 0 0 0 43013000 34220000 38782000 0 0 0 41960000 48815000 39274000 0 0 0 46694000 48209000 44262000 0 0 0 10310 236 10040 192312;192313;192314;192315;192316;192317;192318;192319;192320;192321;192322;192323 118808;118809;118810;118811;118812;118813;118814;118815;118816;118817 118809 10 IQVTGSEGELGIYPGHAPLLTAIKPGMIR Unmodified 3017.6372 0.63721233 236 P0A6E6 atpC ATP synthase epsilon chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 45.446 44.05 3;4 3.3677E-32 21384 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 201.32 200.64 8250800000 281680000 272250000 238560000 34390000 43332000 3776300 673520000 547280000 569050000 163650000 174030000 152990000 770090000 708290000 660170000 66832000 65094000 63332000 860830000 832640000 832060000 123420000 99303000 14229000 10311 236 10041 192324;192325;192326;192327;192328;192329;192330;192331;192332;192333;192334;192335;192336;192337;192338;192339;192340;192341;192342;192343;192344;192345;192346;192347;192348;192349;192350;192351;192352;192353;192354;192355;192356;192357;192358;192359;192360;192361;192362;192363;192364;192365;192366;192367 118818;118819;118820;118821;118822;118823;118824;118825;118826;118827;118828;118829;118830;118831;118832;118833;118834;118835;118836;118837;118838;118839;118840;118841;118842;118843;118844;118845;118846;118847;118848;118849;118850;118851;118852 118840 33 IQVTGSEGELGIYPGHAPLLTAIKPGMIR Oxidation (M) 3033.6321 0.63212695 236 P0A6E6 atpC ATP synthase epsilon chain yes yes 0 1 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.366 41.606 4 3.8926E-07 17069 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 89.039 88.783 159640000 0 0 0 0 1830000 0 13390000 21710000 15742000 12523000 0 8796500 9644300 14913000 12805000 0 0 0 12773000 12523000 17570000 5423100 0 0 10312 236 10041 192368;192369;192370;192371;192372;192373;192374;192375;192376;192377;192378;192379;192380 118853;118854;118855 118853 87 3 IQVTGSPAVLQSPQVQAK Unmodified 1850.0262 0.026161756 1273 P25746 hflD High frequency lysogenization protein HflD yes yes 0 0 0 By MS/MS 1 32.645 29.943 2 5.0101E-06 11763 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 101.6 93.684 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10313 1273 10042 192381 118856 118856 1 IQYAFPDNEGHVSVR Unmodified 1730.8376 0.8376327 673 P0ABR1 dinI DNA-damage-inducible protein I yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.082 25.916 3 3.1485E-06 11811 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 78.69 74.656 219780000 0 17253000 13782000 0 0 0 20251000 20925000 22677000 0 0 0 16017000 12893000 15793000 0 0 0 26218000 31373000 22594000 0 0 0 10314 673 10043 192382;192383;192384;192385;192386;192387;192388;192389;192390;192391;192392 118857;118858;118859 118857 3 IRDEMGLAMEEGCGIYR Unmodified 1998.8962 0.89615192 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 34.093 32.531 2;3 2.226E-61 14948 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 298.54 287.33 1205600000 16363000 11232000 13086000 2784300 3207400 3156300 145340000 150700000 141950000 49331000 41372000 48324000 112860000 110650000 120490000 13144000 9895300 9126800 55468000 62289000 57449000 10820000 7693900 8828200 10315 25 10044 192393;192394;192395;192396;192397;192398;192399;192400;192401;192402;192403;192404;192405;192406;192407;192408;192409;192410;192411;192412;192413;192414;192415;192416;192417;192418;192419;192420;192421;192422;192423;192424;192425;192426;192427;192428;192429;192430 118860;118861;118862;118863;118864;118865;118866;118867;118868;118869;118870;118871;118872;118873;118874;118875;118876;118877;118878;118879;118880;118881;118882 118878 23 IRDNQKR Unmodified 928.52026 0.52026173 446 P0A8M6 yeeX UPF0265 protein YeeX yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 7.5435 7.9406 2 0.0009439 1434 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 163.67 91.954 79401000 0 0 0 1941200 2347200 2303100 0 0 0 15046000 15393000 14262000 0 0 0 7819700 3895500 3414000 0 0 0 4656600 4448900 3873700 10316 446 10045 192431;192432;192433;192434;192435;192436;192437;192438;192439;192440;192441;192442 118883;118884;118885;118886;118887;118888;118889;118890;118891;118892;118893;118894 118887 12 IRDWYQR Unmodified 1035.525 0.52501276 6;12 CON__P02533;CON__Q04695;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08779 no no 0 0 1 By MS/MS 1 16.408 16.211 2 0.009884 4652 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 98.458 82.577 8759000 0 0 0 0 0 0 0 0 0 8759000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 10317 6;12 10046 192443 118895 118895 1 IREDYLTFAGQLPGNLDIR Unmodified 2190.1433 0.14331678 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 48.871 47.528 2;3 5.3585E-37 23605 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 300.03 270.68 1894000000 123580000 120850000 115910000 3735600 4901200 4917300 147440000 150020000 153600000 0 0 0 134660000 114170000 128790000 0 0 0 233900000 235360000 218100000 0 0 4094300 10318 1218 10047 192444;192445;192446;192447;192448;192449;192450;192451;192452;192453;192454;192455;192456;192457;192458;192459;192460;192461;192462;192463;192464;192465;192466;192467;192468;192469;192470;192471 118896;118897;118898;118899;118900;118901;118902;118903;118904;118905;118906;118907;118908;118909;118910;118911;118912;118913;118914;118915 118897 20 IREQVGDDK Unmodified 1058.5356 0.53563702 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.361 11.176 2 0.00046956 2535 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.31 101.58 303750000 20670000 20696000 17810000 0 0 0 27740000 23539000 28448000 0 0 0 26075000 22875000 29004000 0 0 0 33858000 27110000 25924000 0 0 0 10319 86 10048 192472;192473;192474;192475;192476;192477;192478;192479;192480;192481;192482;192483 118916;118917;118918;118919 118918 4 IRFPEHCGIGIKPCSEEGTK Unmodified 2314.1198 0.11982092 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 1 3 3 3 3 4 3 3 3 4 19.482 19.985 2;3;4;5 1.2027E-18 7621 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 175.65 164.03 6458700000 857570000 868660000 853030000 0 0 1497900 385320000 351460000 369250000 0 0 0 343970000 338400000 299350000 0 0 0 661640000 512120000 616420000 0 0 0 10320 179 10049 192484;192485;192486;192487;192488;192489;192490;192491;192492;192493;192494;192495;192496;192497;192498;192499;192500;192501;192502;192503;192504;192505;192506;192507;192508;192509;192510;192511;192512;192513;192514;192515;192516;192517;192518;192519;192520;192521;192522;192523;192524;192525 118920;118921;118922;118923;118924;118925;118926;118927;118928;118929;118930;118931;118932;118933;118934;118935;118936;118937;118938;118939;118940;118941;118942;118943;118944;118945;118946;118947;118948;118949;118950;118951;118952;118953;118954;118955 118932 36 IRHPQEQLAAVAPLLCAGITTYSPLR Unmodified 2874.5538 0.55381705 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 48.382 47.143 3 3.9601E-16 23115 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.82 150.83 117020000 43101000 39445000 34475000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10321 1762 10050 192526;192527;192528 118956;118957;118958 118956 3 IRKDFGK Unmodified 862.50249 0.5024864 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By MS/MS By matching 1 1 1 10.455 10.804 2 0.027317 2014 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 94.662 29.905 44714000 0 0 2707000 0 0 0 0 0 0 0 0 0 0 0 0 30052000 0 0 0 0 0 0 0 11955000 10322 463 10051 192529;192530;192531 118959 118959 1 IRLENEIQTYR Unmodified 1433.7627 0.76267685 13 CON__P13645 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 23.498 22.646 2;3 6.1591E-14 7626 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 223.14 212.77 321480000 0 0 0 17786000 23023000 20790000 0 0 0 31092000 24981000 20529000 0 0 0 7368500 11250000 9251300 0 0 0 40909000 53466000 61033000 + 10323 13 10052 192532;192533;192534;192535;192536;192537;192538;192539;192540;192541;192542;192543;192544;192545;192546;192547;192548;192549;192550;192551;192552 118960;118961;118962;118963;118964;118965;118966;118967;118968;118969;118970;118971 118966 12 IRNEMVPGVEGGMTR Unmodified 1644.8076 0.8075949 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 2 2 2 22.431 21.855 2;3 9.0991E-27 9193 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 265.22 237.8 1170500000 326910000 297710000 264990000 0 0 0 51313000 54033000 55397000 0 0 0 11204000 13813000 8467200 0 0 0 33130000 23658000 29854000 0 0 0 10324 1254 10053 192553;192554;192555;192556;192557;192558;192559;192560;192561;192562;192563;192564;192565;192566;192567;192568;192569;192570;192571;192572;192573;192574 118972;118973;118974;118975;118976;118977;118978;118979;118980;118981;118982;118983;118984;118985;118986;118987;118988;118989 118982 16 IRNGQAANK Unmodified 970.53083 0.53082642 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 7.2789 7.7643 2 0.05786 1587 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 58.981 50.641 15348000 0 0 0 1529800 1835500 1920300 0 0 0 2626700 0 2589200 0 0 0 2846700 0 886100 0 0 0 0 0 1113400 10325 377 10054 192575;192576;192577;192578;192579;192580;192581;192582 118990;118991 118990 2 IRPHHPLNR Unmodified 1138.6472 0.64719358 1815 P76104 ydcP Uncharacterized protease YdcP yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 9.7749 10.601 3 0.039432 2364 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 53.775 39.657 10049000 549300 2445800 1421700 0 0 0 0 0 0 0 0 0 745270 195210 0 0 0 0 1486100 1320500 1884700 0 0 0 10326 1815 10055 192583;192584;192585;192586;192587;192588;192589;192590 118992 118992 0 IRPMIAVLAAR Unmodified 1209.738 0.73798242 769 P0AD57 ispB Octaprenyl-diphosphate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.133 29.777 3 6.1665E-05 13867 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.4 101.45 136980000 7911300 10397000 8762200 0 0 0 11308000 12317000 9392300 0 0 0 7080100 8254200 8694600 0 0 0 17077000 16137000 19650000 0 0 0 10327 769 10056 192591;192592;192593;192594;192595;192596;192597;192598;192599;192600;192601;192602 118993;118994;118995;118996;118997;118998;118999;119000;119001;119002 118996 10 IRQIEAK Unmodified 856.51305 0.51305109 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 11.263 11.185 2 0.00042635 2207 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 162.31 55.89 312900000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 181560000 67053000 64296000 0 0 0 0 0 0 10328 36 10057 192603;192604;192605 119003;119004;119005 119003 3 IRRDDEVIVLTGK Unmodified 1512.8624 0.86239089 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 3 3 3 1 1 1 2 2 3 1 1 1 2 2 3 2 2 2 3 3 3 19.398 19.669 2;3;4 1.4872E-12 5712 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 201 172.04 779550000 24645000 20152000 4036000 48995000 43577000 42345000 8257600 9910100 8332000 58985000 53591000 64537000 7684400 9107500 5598300 43330000 38015000 42512000 21851000 17562000 13595000 64697000 63369000 64867000 10329 1625 10058 192606;192607;192608;192609;192610;192611;192612;192613;192614;192615;192616;192617;192618;192619;192620;192621;192622;192623;192624;192625;192626;192627;192628;192629;192630;192631;192632;192633;192634;192635;192636;192637;192638;192639;192640;192641;192642;192643;192644;192645;192646;192647;192648;192649;192650;192651;192652;192653;192654 119006;119007;119008;119009;119010;119011;119012;119013;119014;119015;119016;119017;119018;119019;119020;119021;119022;119023;119024;119025;119026;119027;119028;119029;119030;119031;119032;119033;119034 119007 27 ISAAAHNELTK Unmodified 1153.6091 0.60913632 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 11.711 12.36 2;3 4.6299E-11 3339 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 200.68 192.36 1208000000 33570000 27170000 22863000 17443000 15878000 11382000 141750000 147810000 127380000 52607000 44030000 58729000 71995000 63324000 71688000 9423400 0 3901200 85628000 80235000 89242000 9085600 10437000 12422000 10330 27 10059 192655;192656;192657;192658;192659;192660;192661;192662;192663;192664;192665;192666;192667;192668;192669;192670;192671;192672;192673;192674;192675;192676;192677;192678;192679;192680;192681;192682;192683;192684;192685;192686;192687;192688;192689;192690;192691;192692;192693;192694;192695;192696;192697;192698;192699 119035;119036;119037;119038;119039;119040;119041;119042;119043;119044;119045;119046;119047;119048;119049;119050;119051;119052;119053;119054;119055;119056 119051 21 ISAAMEK Unmodified 748.37893 0.37892537 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.937 12.509 2 0.023497 2802 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 73.616 44.278 1059600000 61876000 58247000 59829000 9539200 9930900 8914800 0 0 0 16504000 17274000 17387000 158200000 105310000 120040000 5275700 5056600 5409600 176220000 166650000 0 18642000 20653000 18647000 10331 643 10060 192700;192701;192702;192703;192704;192705;192706;192707;192708;192709;192710;192711;192712;192713;192714;192715;192716;192717;192718;192719 119057;119058;119059;119060;119061;119062;119063;119064;119065;119066;119067;119068;119069 119057 12 ISAAMEKR Unmodified 904.48004 0.4800364 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 10.907 11.445 2 0.004776 2246 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 89.296 34.77 20897000 0 0 0 0 2243500 1103500 0 0 0 3387400 0 0 0 0 0 0 0 0 0 0 0 4608600 6343000 3211300 10332 643 10061 192720;192721;192722;192723;192724;192725 119070;119071;119072 119070 3 ISADQVDQEVER Unmodified 1387.6579 0.657937 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.306 22.044 2 1.9203E-39 9126 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 276 270.66 8905600000 516170000 478230000 485460000 9948100 9906000 9116700 815740000 826010000 813150000 16580000 11443000 12920000 798110000 703730000 650590000 0 5211800 0 876010000 948320000 893090000 9984800 7730500 8116200 10333 192 10062 192726;192727;192728;192729;192730;192731;192732;192733;192734;192735;192736;192737;192738;192739;192740;192741;192742;192743;192744;192745;192746;192747;192748 119073;119074;119075;119076;119077;119078;119079;119080;119081;119082;119083;119084;119085;119086;119087;119088;119089;119090;119091;119092;119093;119094 119084 22 ISAGGYGDK Unmodified 866.4134 0.41339662 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.26 12.781 2 0.10894 2977 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 41.724 29.463 229550000 26703000 29037000 23670000 0 1286500 1538500 31485000 0 0 6570900 6603800 7162200 0 21736000 0 3437000 2361900 2363700 31470000 27602000 0 2574800 1406100 2545800 10334 1050 10063 192749;192750;192751;192752;192753;192754;192755;192756;192757;192758;192759;192760;192761;192762;192763;192764;192765;192766 119095 119095 1 ISAGGYGDKR Unmodified 1022.5145 0.51450765 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.174 11.702 2 1.4153E-06 2899 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 168.27 116.48 407700000 0 0 0 5732300 0 0 27887000 34679000 34186000 34745000 31648000 33456000 21781000 19018000 23548000 17716000 6985500 8317800 29607000 28040000 27683000 10669000 12001000 0 10335 1050 10064 192767;192768;192769;192770;192771;192772;192773;192774;192775;192776;192777;192778;192779;192780;192781;192782;192783;192784 119096;119097;119098;119099;119100;119101;119102;119103;119104 119097 9 ISAGYFR Unmodified 812.41809 0.41808807 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.737 21.116 2 0.00028119 7894 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 159.65 110.34 557120000 49409000 45907000 42361000 0 0 0 57238000 50836000 52002000 0 0 0 43737000 32814000 34569000 0 0 0 48537000 46865000 52847000 0 0 0 10336 289 10065 192785;192786;192787;192788;192789;192790;192791;192792;192793;192794;192795;192796 119105;119106;119107;119108;119109;119110;119111;119112 119112 8 ISAISAASVSLLK Unmodified 1258.7497 0.74965254 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.06 38.34 2 3.9666E-06 18654 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.89 115.02 233970000 17825000 15230000 14011000 5449500 7072400 5672700 30250000 24094000 28593000 0 0 0 11679000 10281000 10132000 0 0 0 17280000 12708000 19390000 0 2382700 1915600 10337 1765 10066 192797;192798;192799;192800;192801;192802;192803;192804;192805;192806;192807;192808;192809;192810;192811;192812;192813 119113;119114;119115;119116;119117;119118;119119;119120;119121;119122;119123;119124;119125 119117 11 ISALDEK Unmodified 774.41233 0.41233399 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.477 14.161 2 0.0038105 4311 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 106.43 43.714 477230000 126160000 117690000 134410000 467570 592100 655080 13487000 4082100 30832000 6720300 5284400 5253400 0 0 0 0 0 0 0 31590000 0 0 0 0 10338 529 10067 192814;192815;192816;192817;192818;192819;192820;192821;192822;192823;192824;192825;192826 119126;119127;119128 119127 3 ISALGPGGLTR Unmodified 1040.5978 0.59784335 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 3 2 1 1 2 2 2 2 1 1 2 2 1 1 26.104 24.982 2 1.9897E-07 9231 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 166.07 147.28 47287000000 474660000 485870000 401110000 30847000 31614000 26260000 391980000 349840000 360110000 3332300000 3304200000 3357600000 440830000 397670000 381870000 7696200000 6796900000 6509500000 553770000 544860000 546080000 3932000000 3381800000 3559100000 10339 463 10068 192827;192828;192829;192830;192831;192832;192833;192834;192835;192836;192837;192838;192839;192840;192841;192842;192843;192844;192845;192846;192847;192848;192849;192850;192851;192852;192853;192854;192855;192856;192857;192858;192859;192860 119129;119130;119131;119132;119133;119134;119135;119136;119137;119138;119139;119140;119141;119142;119143;119144;119145;119146;119147;119148;119149;119150;119151;119152;119153;119154;119155;119156;119157;119158;119159;119160;119161;119162;119163;119164;119165;119166;119167;119168;119169;119170;119171 119137 43 ISALSDNGEHFSAK Unmodified 1474.7052 0.70522155 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 1 17.855 18.252 2;3 6.8115E-20 5182 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 218.75 213.21 892410000 80223000 81125000 66671000 5616300 4265700 0 17489000 25636000 20948000 22458000 20724000 16476000 76487000 68771000 65991000 96875000 63050000 67781000 19475000 19338000 19410000 10697000 16494000 6413600 10340 536 10069 192861;192862;192863;192864;192865;192866;192867;192868;192869;192870;192871;192872;192873;192874;192875;192876;192877;192878;192879;192880;192881;192882;192883;192884;192885;192886;192887;192888;192889;192890;192891;192892;192893;192894;192895;192896;192897;192898;192899;192900;192901 119172;119173;119174;119175;119176;119177;119178;119179;119180;119181;119182;119183;119184;119185;119186;119187;119188;119189;119190;119191;119192;119193;119194;119195;119196 119173 24 ISAPLHPPYFCQTK Unmodified 1657.8286 0.82864792 1804 P76010 ycgR Flagellar brake protein YcgR yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 29.617 28.339 3 0.07318 13118 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 33.751 26.549 60442000 23936000 17599000 14906000 1479300 1407400 1114500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10341 1804 10070 192902;192903;192904;192905;192906;192907 119197 119197 1 ISAQLAEFVANTPVK Unmodified 1586.8668 0.86680757 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 2 2 2 2 2 2 2 1 43.568 41.872 2;3 7.9966E-12 19525 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 224.49 223.25 921920000 6301700 4399500 3805100 0 0 0 99280000 111150000 118520000 1907400 2344800 2605500 100600000 111840000 102090000 0 0 0 89486000 81702000 85017000 0 0 884110 10342 1467 10071 192908;192909;192910;192911;192912;192913;192914;192915;192916;192917;192918;192919;192920;192921;192922;192923;192924;192925;192926;192927;192928;192929;192930;192931;192932;192933 119198;119199;119200;119201;119202;119203;119204;119205;119206;119207;119208;119209;119210;119211;119212;119213 119210 16 ISAQMGYHDYPF Unmodified 1427.618 0.61798644 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.782 36.109 2 0.00051482 17860 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 83.998 81.844 294800000 31151000 31265000 29686000 0 0 0 24480000 20689000 18552000 0 0 0 20238000 20714000 19183000 0 0 0 23857000 28451000 26536000 0 0 0 10343 1845 10072 192934;192935;192936;192937;192938;192939;192940;192941;192942;192943;192944;192945 119214;119215;119216;119217;119218;119219;119220;119221;119222;119223;119224;119225 119215 11 ISCVVHIGDGEFTDIER Unmodified 1945.9204 0.92037606 1785 P75867 ycbZ Putative Lon protease homolog yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.513 34.752 3 7.6106E-07 13969 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 102.58 98.456 88768000 0 0 0 0 0 0 8393900 8929100 8095800 8803700 5884800 6858500 4870700 0 5971900 0 1303900 0 8893700 6957000 10323000 0 3481700 0 10344 1785 10073 192946;192947;192948;192949;192950;192951;192952;192953;192954;192955;192956;192957;192958 119226;119227;119228;119229;119230;119231 119226 3 ISDAAQAHFAK Unmodified 1157.5829 0.58292157 1654 P63020 nfuA Fe/S biogenesis protein NfuA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 12.454 13.126 2;3 8.3411E-06 3530 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 148.94 113.33 5036000000 356660000 373560000 369980000 19455000 19580000 17925000 473850000 457910000 443480000 23595000 21133000 19435000 367720000 351850000 280080000 0 2839200 3893000 466310000 468290000 446130000 18203000 19254000 14865000 10345 1654 10074 192959;192960;192961;192962;192963;192964;192965;192966;192967;192968;192969;192970;192971;192972;192973;192974;192975;192976;192977;192978;192979;192980;192981;192982;192983;192984;192985;192986;192987;192988;192989;192990;192991;192992;192993;192994;192995;192996;192997;192998;192999;193000;193001;193002 119232;119233;119234;119235;119236;119237;119238;119239;119240;119241;119242;119243;119244;119245;119246;119247;119248;119249;119250;119251;119252;119253;119254;119255;119256;119257;119258;119259;119260;119261;119262;119263;119264;119265;119266;119267;119268;119269;119270;119271;119272 119269 37 ISDAELR Unmodified 802.41848 0.418482 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 13.97 14.587 2 0.022655 4571 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.975 29.444 182490000 34366000 31332000 41934000 0 0 0 0 0 0 0 0 0 0 21129000 0 4331000 0 3231300 0 0 46164000 0 0 0 10346 1094 10075 193003;193004;193005;193006;193007;193008;193009;193010 119273;119274 119273 2 ISDDLYVFK Unmodified 1098.5597 0.55972651 809 P0ADU5 ygiW Protein YgiW yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.634 35.906 2 0.00011997 17596 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.55 123.96 5580800000 673480000 616960000 558720000 3630200 4107200 3847800 896970000 904910000 857300000 5216800 4187600 5306200 145610000 153880000 153500000 0 958810 0 180880000 201520000 209770000 0 0 0 10347 809 10076 193011;193012;193013;193014;193015;193016;193017;193018;193019;193020;193021;193022;193023;193024;193025;193026;193027;193028;193029 119275;119276;119277;119278;119279;119280;119281;119282;119283;119284;119285;119286;119287;119288 119277 9 ISDEQLDQAIANIAK Unmodified 1627.8417 0.84171503 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 2 2 1 3 3 3 1 1 2 2 3 2 2 1 3 3 3 40.321 39.357 2;3 2.4238E-20 22313 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 266.93 250.29 1796300000 140740000 139010000 117500000 3462200 3392000 3060300 203010000 208250000 189530000 2048700 2124900 3398500 107460000 101510000 98694000 0 2084800 1355200 160610000 158600000 150470000 0 0 0 10348 688 10077 193030;193031;193032;193033;193034;193035;193036;193037;193038;193039;193040;193041;193042;193043;193044;193045;193046;193047;193048;193049;193050;193051;193052;193053;193054;193055;193056;193057;193058;193059;193060;193061;193062;193063;193064;193065;193066;193067;193068;193069;193070;193071;193072;193073;193074;193075 119289;119290;119291;119292;119293;119294;119295;119296;119297;119298;119299;119300;119301;119302;119303;119304;119305;119306;119307;119308;119309 119293 20 ISDIPEFVR Unmodified 1074.571 0.5709599 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.142 33.61 2 6.9922E-05 15948 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.89 118.15 4941800000 250700000 237330000 222360000 2323000 1824600 2291300 640160000 646690000 654070000 0 0 2875700 457380000 397040000 435230000 0 2051000 0 323590000 333170000 319880000 3958300 4205500 4640700 10349 697 10078 193076;193077;193078;193079;193080;193081;193082;193083;193084;193085;193086;193087;193088;193089;193090;193091;193092;193093;193094;193095 119310;119311;119312;119313;119314;119315;119316;119317;119318;119319;119320;119321 119315 11 ISDNTVMTTSR Unmodified 1223.5816 0.58160094 467 P0A8W5 yqgE UPF0301 protein YqgE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.69 16.386 2 1.5285E-35 5761 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 292.4 287.94 467050000 47316000 46782000 51758000 3653500 3532800 4013100 28078000 32636000 31496000 6671900 6000600 5237500 30092000 28646000 28998000 0 0 0 38106000 37123000 36905000 0 0 0 10350 467 10079 193096;193097;193098;193099;193100;193101;193102;193103;193104;193105;193106;193107;193108;193109;193110;193111;193112;193113;193114;193115 119322;119323;119324;119325;119326;119327;119328;119329;119330;119331;119332;119333;119334;119335;119336;119337;119338;119339;119340;119341 119325 20 ISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIK Unmodified 4066.0382 0.03824917 847 P0AED0 uspA Universal stress protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 3 3 2 3 3 4 4 2 2 3 3 2 3 3 3 3 2 3 1 53.75 52.323 3;4;5 3.187E-59 25899 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 230.29 229.08 10985000000 1177200000 1064900000 1010200000 120040000 97493000 112210000 1391200000 1226800000 1206400000 124430000 134480000 146750000 556480000 512800000 460380000 0 0 0 552650000 524080000 474520000 27588000 42216000 22079000 10351 847 10080 193116;193117;193118;193119;193120;193121;193122;193123;193124;193125;193126;193127;193128;193129;193130;193131;193132;193133;193134;193135;193136;193137;193138;193139;193140;193141;193142;193143;193144;193145;193146;193147;193148;193149;193150;193151;193152;193153;193154;193155;193156;193157;193158;193159;193160;193161;193162;193163;193164;193165;193166;193167;193168;193169;193170;193171;193172;193173;193174 119342;119343;119344;119345;119346;119347;119348;119349;119350;119351;119352;119353;119354;119355;119356;119357;119358;119359;119360;119361;119362;119363;119364;119365;119366;119367;119368;119369;119370;119371;119372;119373;119374;119375;119376;119377;119378;119379;119380;119381;119382 119350 41 ISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKK Unmodified 4194.1332 0.13321219 847 P0AED0 uspA Universal stress protein A yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 1 2 2 2 1 1 1 1 1 2 2 2 1 1 51.369 50.164 4;5 9.78E-30 18119 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 167.32 166.18 1442800000 130970000 136070000 129400000 19447000 57445000 52436000 136680000 137590000 141780000 61150000 36152000 59060000 54903000 40291000 32737000 5326000 11737000 17109000 34399000 52600000 58422000 21443000 10821000 4892200 10352 847 10081 193175;193176;193177;193178;193179;193180;193181;193182;193183;193184;193185;193186;193187;193188;193189;193190;193191;193192;193193;193194;193195;193196;193197;193198;193199;193200;193201;193202;193203;193204;193205;193206;193207;193208;193209;193210;193211;193212;193213 119383;119384;119385;119386;119387;119388;119389;119390;119391;119392;119393;119394;119395;119396;119397;119398;119399;119400 119397 18 ISEHKPEAVKPLADVQEQVK Unmodified 2244.2114 0.21139634 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 3 3 3 3 3 3 3 3 3 3 2 2 1 3 3 3 3 3 3 17.403 17.871 3;4;5 5.1088E-10 6174 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 114.9 107.45 1265500000 43178000 60096000 20433000 20283000 17868000 13609000 109640000 97193000 98505000 49436000 39743000 42643000 62108000 69389000 73198000 6259400 7388400 3866100 138420000 108940000 110260000 26174000 24328000 22537000 10353 819 10082 193214;193215;193216;193217;193218;193219;193220;193221;193222;193223;193224;193225;193226;193227;193228;193229;193230;193231;193232;193233;193234;193235;193236;193237;193238;193239;193240;193241;193242;193243;193244;193245;193246;193247;193248;193249;193250;193251;193252;193253;193254;193255;193256;193257;193258;193259;193260;193261;193262;193263;193264;193265;193266;193267;193268;193269;193270;193271;193272;193273;193274;193275;193276;193277;193278;193279;193280 119401;119402;119403;119404;119405;119406;119407;119408;119409;119410;119411;119412;119413;119414;119415;119416;119417;119418;119419;119420;119421;119422;119423;119424;119425;119426;119427;119428;119429;119430;119431;119432;119433 119432 33 ISEHLLPR Unmodified 963.55016 0.55016488 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 16.762 17.521 2 1.6486E-05 5861 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 177.71 158.98 351720000 39169000 35680000 0 0 0 0 30826000 30864000 32491000 0 0 0 27045000 22602000 23418000 0 0 0 35121000 39788000 34717000 0 0 0 10354 1143 10083 193281;193282;193283;193284;193285;193286;193287;193288;193289;193290;193291 119434;119435;119436;119437;119438;119439;119440 119439 7 ISEIEADLEK Unmodified 1145.5816 0.58158416 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.089 24.939 2 2.0094E-06 8221 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 158.76 122.36 2260600000 242750000 250910000 216720000 11855000 10569000 11559000 247330000 213160000 234330000 11609000 13284000 15957000 142860000 119770000 122500000 0 1691800 1871500 95235000 99319000 90815000 33897000 37537000 35096000 10355 1653 10084 193292;193293;193294;193295;193296;193297;193298;193299;193300;193301;193302;193303;193304;193305;193306;193307;193308;193309;193310;193311;193312;193313;193314 119441;119442;119443;119444;119445;119446;119447;119448;119449;119450;119451;119452;119453;119454;119455;119456;119457;119458;119459;119460;119461;119462 119455 20 ISELENR Unmodified 859.43995 0.43994572 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 1 1 1 1 12.577 13.233 1;2 6.8177E-07 3254 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 201.97 112.29 1372600000 111080000 110200000 101840000 22875000 17823000 16442000 28700000 125710000 122950000 36735000 29384000 32781000 95331000 94913000 94259000 8667700 5270400 7383200 102370000 102410000 81497000 8013200 8604700 7404400 10356 1962 10085 193315;193316;193317;193318;193319;193320;193321;193322;193323;193324;193325;193326;193327;193328;193329;193330;193331;193332;193333;193334;193335;193336;193337;193338;193339;193340;193341;193342;193343;193344;193345;193346;193347;193348;193349;193350;193351;193352;193353 119463;119464;119465;119466;119467;119468;119469;119470;119471;119472;119473 119466 10 ISELSEGQIDTLR Unmodified 1459.7518 0.75183739 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 1 2 1 31.135 29.756 2;3 8.4476E-33 13403 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 229.73 155.26 362810000 9195200 313590000 8885600 771600 0 0 2015100 2747600 0 0 0 0 2713200 4254700 3482300 0 0 0 4926700 5508700 3507700 1212800 0 0 10357 368 10086 193354;193355;193356;193357;193358;193359;193360;193361;193362;193363;193364;193365;193366;193367;193368;193369;193370;193371;193372;193373;193374 119474;119475;119476;119477;119478;119479;119480;119481 119480 8 ISELSEGQIDTLRDEVAK Unmodified 2002.0219 0.021864239 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 35.259 33.757 2;3 9.7733E-127 16392 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 389.72 354.97 10786000000 1680400000 1482200000 1450600000 38598000 38336000 36039000 422800000 398710000 385230000 110620000 116590000 108310000 511800000 571720000 535860000 68711000 53031000 53660000 871130000 822250000 853370000 56548000 63018000 56877000 10358 368 10087 193375;193376;193377;193378;193379;193380;193381;193382;193383;193384;193385;193386;193387;193388;193389;193390;193391;193392;193393;193394;193395;193396;193397;193398;193399;193400;193401;193402;193403;193404;193405;193406;193407;193408;193409;193410;193411;193412;193413;193414;193415;193416;193417;193418;193419;193420;193421;193422;193423 119482;119483;119484;119485;119486;119487;119488;119489;119490;119491;119492;119493;119494;119495;119496;119497;119498;119499;119500;119501;119502;119503;119504;119505;119506;119507;119508;119509;119510;119511;119512;119513;119514;119515;119516;119517;119518;119519;119520;119521;119522;119523;119524 119495 42 ISESPLTKDKAGQK Unmodified 1500.8148 0.814772 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 2 By MS/MS 1 12.167 12.374 4 0.15646 2809 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 11.692 0 14241000 0 0 0 0 0 0 0 0 0 0 0 14241000 0 0 0 0 0 0 0 0 0 0 0 0 10359 1318 10088 193424 119525 119525 1 ISFDNNQWQVTR Unmodified 1506.7215 0.72154031 1418 P33235 flgK Flagellar hook-associated protein 1 yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 35.129 33.672 2 8.7215E-06 16048 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 130.98 123.34 21193000 0 9393800 10033000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1765700 10360 1418 10089 193425;193426;193427 119526;119527 119527 2 ISFGEMPK Unmodified 907.44734 0.44733929 1123 P16681 phnB Protein PhnB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 28.331 26.927 2 0.0093275 12186 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.229 60.383 185700000 54668000 43277000 45609000 0 0 0 12135000 14475000 11146000 916420 0 0 0 0 0 0 0 0 0 0 3473200 0 0 0 10361 1123 10090 193428;193429;193430;193431;193432;193433;193434;193435 119528;119529;119530;119531 119531 4 ISFLIDADGK Unmodified 1077.5706 0.57062555 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.524 37.85 2 1.324E-06 18708 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.16 131.01 1858900000 186590000 179750000 157400000 0 0 0 151330000 145250000 143450000 0 0 0 122260000 128980000 117860000 0 0 0 178370000 178160000 169440000 0 0 0 10362 834 10091 193436;193437;193438;193439;193440;193441;193442;193443;193444;193445;193446;193447 119532;119533;119534;119535;119536;119537;119538;119539;119540;119541;119542;119543 119533 12 ISFLIDADGKIEHVFDDFK Unmodified 2208.1103 0.11028532 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 1 1 1 1 1 1 2 2 2 2 1 2 2 2 1 1 51.547 50.446 3;4 7.6318E-10 24355 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 115.98 106.98 700620000 66565000 57470000 62200000 3482600 2845200 3017400 40478000 33454000 34189000 0 0 0 61132000 56108000 42708000 6535900 4327200 0 75252000 65404000 82745000 1707000 0 995220 10363 834 10092 193448;193449;193450;193451;193452;193453;193454;193455;193456;193457;193458;193459;193460;193461;193462;193463;193464;193465;193466;193467;193468;193469;193470;193471;193472;193473;193474;193475 119544;119545;119546;119547;119548;119549;119550;119551;119552;119553;119554;119555;119556;119557;119558;119559;119560 119549 17 ISFPAEFHSQTAVEAAMTLYEQMQAAGK Unmodified 3055.4419 0.44194292 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.76 53.354 3 1.9976E-11 26157 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 129.5 127.55 416800000 140830000 124540000 151420000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10364 1888 10093 193476;193477;193478 119561;119562;119563 119563 3 ISGAGIQESHVHDVTITK Unmodified 1890.9799 0.97993984 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 2 2 3 4 3 2 2 2 3 3 3 1 1 1 3 4 3 3 3 3 17.452 17.944 2;3;4 3.3008E-45 6529 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 310.04 286.29 10071000000 892680000 968420000 497400000 8374400 5557700 8100400 375620000 717890000 611370000 7424900 6330100 6528700 945130000 885770000 944530000 1772600 2013900 1822400 1171500000 1053300000 897950000 23735000 19307000 18363000 10365 788 10094 193479;193480;193481;193482;193483;193484;193485;193486;193487;193488;193489;193490;193491;193492;193493;193494;193495;193496;193497;193498;193499;193500;193501;193502;193503;193504;193505;193506;193507;193508;193509;193510;193511;193512;193513;193514;193515;193516;193517;193518;193519;193520;193521;193522;193523;193524;193525;193526;193527;193528;193529;193530;193531;193532;193533;193534;193535;193536;193537;193538;193539;193540 119564;119565;119566;119567;119568;119569;119570;119571;119572;119573;119574;119575;119576;119577;119578;119579;119580;119581;119582;119583;119584;119585;119586;119587;119588;119589;119590;119591;119592;119593;119594;119595;119596;119597;119598;119599;119600;119601;119602 119578 39 ISGANLSR Unmodified 816.44537 0.44536545 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 3 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 2 1 1 13.044 13.718 2 2.2923E-07 2844 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 201.49 34.705 23407000000 822220000 745300000 660260000 2926400000 3256800000 2975100000 882400000 904600000 933850000 241700000 195360000 226280000 429040000 409340000 432390000 112040000 82250000 108610000 877140000 868270000 756600000 1581900000 1482300000 1497000000 10366 133 10095 193541;193542;193543;193544;193545;193546;193547;193548;193549;193550;193551;193552;193553;193554;193555;193556;193557;193558;193559;193560;193561;193562;193563;193564;193565;193566;193567;193568;193569;193570;193571;193572;193573;193574;193575 119603;119604;119605;119606;119607;119608;119609;119610;119611;119612;119613;119614;119615;119616;119617;119618;119619;119620;119621;119622;119623;119624;119625;119626;119627 119620 20 ISGDGVYGR Unmodified 922.45084 0.45084476 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.571 14.464 2 0.002296 4559 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.642 66.005 208190000 26436000 20517000 18102000 276220 0 586270 17012000 18632000 14975000 0 0 0 13184000 16603000 13524000 0 0 0 16501000 15028000 16813000 0 0 0 10367 345 10096 193576;193577;193578;193579;193580;193581;193582;193583;193584;193585;193586;193587;193588;193589 119628;119629 119628 2 ISGDYAYGWLR Unmodified 1299.6248 0.62478638 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.812 39.399 2 1.1349E-07 18471 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 172.21 164.57 2225300000 183340000 167130000 174740000 0 0 0 186450000 174660000 177990000 0 0 0 182110000 164790000 164900000 1480800 0 1370300 221340000 215100000 209940000 0 0 0 10368 149 10097 193590;193591;193592;193593;193594;193595;193596;193597;193598;193599;193600;193601;193602;193603 119630;119631;119632;119633;119634;119635;119636;119637;119638;119639;119640;119641 119639 12 ISGEEDR Unmodified 804.36136 0.36136105 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 5.8807 6.75 2 0.16068 1452 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 43.214 11.097 7520400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 899370 3470300 3150800 0 0 0 10369 623 10098 193604;193605;193606 119642;119643 119643 2 ISGEEDRYSHTDLWDFQANVEGSQK Unmodified 2910.3056 0.30564367 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 35.672 34.12 4 0.0011729 16382 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 61.039 58.462 86434000 13125000 11485000 8126200 0 0 0 6122400 8195400 0 0 0 0 7413200 0 6628700 0 0 0 8711300 16626000 0 0 0 0 10370 623 10099 193607;193608;193609;193610;193611;193612;193613;193614;193615 119644 119644 1 ISGNVVR Unmodified 743.42899 0.42898711 1504 P38051 menF Isochorismate synthase MenF yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 10.634 11.4 2 0.12356 2904 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 49.59 17.654 40897000 17706000 0 0 0 0 0 0 1710300 8935800 0 0 0 0 0 0 0 0 0 12545000 0 0 0 0 0 10371 1504 10100 193616;193617;193618;193619 119645 119645 1 ISGQGTDR Unmodified 832.40389 0.40389457 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 4.9031 5.8208 2 0.00071397 1028 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 126.28 79.233 276340000 0 0 0 0 0 0 22896000 36219000 28624000 0 0 0 36071000 33677000 33918000 0 0 0 43703000 41229000 0 0 0 0 10372 311 10101 193620;193621;193622;193623;193624;193625;193626;193627 119646 119646 1 ISGQPAIVTSYNDKR Unmodified 1647.858 0.8580338 1096 P14294 topB DNA topoisomerase 3 yes yes 0 0 1 By matching By MS/MS 1 1 18.985 18.992 3 0.051662 5448 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 39.005 38.669 3166200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1789800 0 1376300 0 0 0 0 0 0 10373 1096 10102 193628;193629 119647 119647 0 ISHASLQPGGQAPVAPSALSAGTR Unmodified 2272.1924 0.19239224 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 2 2 2 2 26.202 25.021 2;3 5.619E-16 11487 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 194.49 182.58 1679300000 50956000 41550000 42655000 0 0 522490 213230000 181980000 215460000 0 0 0 163100000 153350000 135170000 0 0 0 178340000 144840000 158100000 0 0 0 10374 1890 10103 193630;193631;193632;193633;193634;193635;193636;193637;193638;193639;193640;193641;193642;193643;193644;193645;193646;193647;193648;193649;193650;193651 119648;119649;119650;119651;119652;119653;119654;119655;119656;119657;119658;119659;119660;119661;119662 119651 15 ISHGQVDLSELGPNADELLSK Unmodified 2221.1226 0.12264092 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 41.233 39.468 2;3 6.816E-75 19658 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 365.68 362.9 5904900000 425640000 446090000 399950000 0 2656100 2081400 621410000 518050000 543620000 3576100 3718900 3820900 443830000 377650000 399720000 0 0 0 581530000 572780000 558780000 0 0 0 10375 1137 10104 193652;193653;193654;193655;193656;193657;193658;193659;193660;193661;193662;193663;193664;193665;193666;193667;193668;193669;193670;193671;193672;193673;193674;193675;193676;193677;193678;193679;193680 119663;119664;119665;119666;119667;119668;119669;119670;119671;119672;119673;119674;119675;119676;119677;119678;119679;119680;119681;119682;119683;119684;119685;119686;119687;119688;119689;119690 119667 28 ISIGGGSCAISGGYGSR Unmodified 1597.7519 0.75185416 8 CON__P48668;CON__P02538;CON__P04259 yes no 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 28.273 26.19 2 7.3336E-07 9655 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 107.99 102.27 20825000 0 0 0 0 0 0 0 0 0 7452900 6040500 7331600 0 0 0 0 0 0 0 0 0 0 0 0 + 10376 8 10105 193681;193682;193683 119691;119692;119693 119693 3 ISINSPALADPTLITR Unmodified 1680.941 0.94103514 1627 P60664 hisF Imidazole glycerol phosphate synthase subunit HisF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.478 42.963 2 3.1201E-08 20972 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.49 136.58 329990000 38874000 38394000 35752000 0 0 0 24657000 23384000 22553000 0 0 0 27384000 22279000 20524000 0 0 0 27799000 24960000 23426000 0 0 0 10377 1627 10106 193684;193685;193686;193687;193688;193689;193690;193691;193692;193693;193694;193695 119694;119695;119696;119697;119698;119699;119700;119701;119702;119703;119704;119705 119697 12 ISIQLNDGR Unmodified 1014.5458 0.54580778 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.034 23.986 2 0.0010569 8708 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 94.302 74.38 458470000 40049000 44483000 38442000 0 0 0 51280000 57051000 48977000 3278200 3524100 0 27701000 23462000 24406000 0 771370 0 31868000 28242000 32337000 0 0 2597600 10378 1507 10107 193696;193697;193698;193699;193700;193701;193702;193703;193704;193705;193706;193707;193708;193709;193710;193711 119706;119707;119708;119709;119710;119711;119712;119713 119706 1 ISISTSGGSFR Unmodified 1110.5669 0.56693715 14 CON__P13647 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 24.493 23.401 2 1.478E-06 7990 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 156.35 132.19 111100000 0 0 0 4170600 4321200 3789300 0 0 0 19721000 19239000 19434000 0 0 0 0 0 1831700 0 0 0 12043000 12486000 14064000 + 10379 14 10108 193712;193713;193714;193715;193716;193717;193718;193719;193720;193721 119714;119715;119716;119717;119718;119719;119720;119721;119722 119719 9 ISIWMFPEGTR Unmodified 1335.6645 0.66454271 1285 P26647 plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.467 49.062 2 0.12513 24304 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 48.44 38.068 96551000 0 3350600 3735900 0 0 1557400 10636000 10849000 9119200 1660300 0 0 6828900 7008400 8431300 0 0 0 10036000 9063900 9917500 2137200 0 2220600 10380 1285 10109 193722;193723;193724;193725;193726;193727;193728;193729;193730;193731;193732;193733;193734;193735;193736 119723 119723 0 ISLDEAMASGHVK Unmodified 1356.6708 0.6707503 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 1 25.283 24.211 2;3 6.8548E-06 10881 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.5 135.46 2782000000 217180000 255020000 189910000 0 0 511660 237840000 221030000 255770000 0 0 1670400 244770000 238940000 266550000 0 0 0 224630000 249170000 178980000 0 0 0 10381 1450 10110 193737;193738;193739;193740;193741;193742;193743;193744;193745;193746;193747;193748;193749;193750;193751;193752;193753;193754;193755;193756;193757;193758;193759;193760;193761 119724;119725;119726;119727;119728;119729;119730;119731;119732;119733;119734;119735;119736;119737;119738;119739;119740;119741;119742 119728 19 ISLHNESILLLEK Unmodified 1507.861 0.86099391 1656 P63201 gadW HTH-type transcriptional regulator GadW yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 33.724 33.746 3 0.00035179 11447 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 73.386 73.322 11557000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3493700 3198300 4865000 0 0 0 0 0 0 10382 1656 10111 193762;193763;193764 119743;119744 119744 2 ISLLLSK Unmodified 772.50584 0.50584045 2004 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 2 2 1 34.215 32.104 2 0.0026472 12506 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 111.28 105.74 240350000 0 0 0 504840 666600 0 0 0 0 60409000 46259000 49809000 0 0 0 0 0 0 0 0 0 34597000 30825000 17277000 + 10383 2004 10112 193765;193766;193767;193768;193769;193770;193771;193772;193773;193774;193775;193776;193777 119745;119746;119747;119748;119749 119746 5 ISLPTPIMSGVR Unmodified 1269.7115 0.7114929 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.257 40.374 2 1.6136E-07 19592 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.83 150.79 2133300000 164620000 155210000 155590000 1381600 1186600 1572700 172990000 155590000 163440000 2604500 2156400 2536600 140080000 152560000 148940000 0 0 0 237520000 232330000 231820000 4188300 2853500 4133200 10384 29 10113 193778;193779;193780;193781;193782;193783;193784;193785;193786;193787;193788;193789;193790;193791;193792;193793;193794;193795;193796;193797;193798 119750;119751;119752;119753;119754;119755;119756;119757;119758;119759;119760 119756 11 ISLQEEK Unmodified 845.44945 0.44944778 1327 P29013 ycgB Uncharacterized protein YcgB yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 13.857 14.656 2 0.0059278 4668 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.602 41.48 50076000 15492000 12798000 21786000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10385 1327 10114 193799;193800;193801 119761 119761 1 ISNAHSQLLTQLQQQLSDNQSDIDSLR Unmodified 3051.5221 0.52211881 1583 P45955 ybgF Uncharacterized protein YbgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.45 44.962 3 1.6363E-66 21966 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 258.05 255.7 1076600000 118950000 107980000 89116000 0 0 0 64711000 69849000 60509000 0 0 0 87587000 72255000 67335000 0 0 0 114940000 118680000 104680000 0 0 0 10386 1583 10115 193802;193803;193804;193805;193806;193807;193808;193809;193810;193811;193812;193813 119762;119763;119764;119765;119766;119767;119768;119769;119770;119771;119772;119773 119765 12 ISNEESISAMFEH Unmodified 1492.6504 0.65040879 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 40.302 38.52 2;3 1.2579E-17 18562 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 216.45 216.45 2022900000 185390000 174580000 172630000 6634600 7614300 7206100 113040000 108790000 118190000 4359600 4236500 4834600 176950000 189580000 175770000 0 0 0 170850000 175110000 183210000 11850000 13712000 18368000 10387 300 10116 193814;193815;193816;193817;193818;193819;193820;193821;193822;193823;193824;193825;193826;193827;193828;193829;193830;193831;193832;193833;193834;193835;193836;193837;193838;193839;193840;193841;193842;193843;193844;193845;193846;193847;193848;193849 119774;119775;119776;119777;119778;119779;119780;119781;119782;119783;119784;119785;119786;119787;119788;119789;119790;119791;119792;119793;119794;119795;119796;119797;119798;119799;119800;119801;119802;119803 119796 29 ISNGEGVER Unmodified 959.46722 0.46722311 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.025 11.595 2 1.9958E-05 2869 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 156.75 122.75 871980000 119830000 120650000 96917000 6952400 0 8255000 32461000 27366000 30176000 5845900 5177400 6451600 44916000 34714000 40683000 5991200 8811700 8139200 75805000 80274000 90613000 7697400 6379100 7871400 10388 352 10117 193850;193851;193852;193853;193854;193855;193856;193857;193858;193859;193860;193861;193862;193863;193864;193865;193866;193867;193868;193869;193870;193871;193872;193873;193874 119804;119805;119806;119807;119808;119809;119810;119811;119812;119813;119814;119815;119816;119817;119818;119819;119820 119813 17 ISNGNWQSHIGR Unmodified 1367.6694 0.66944516 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.299 16.682 3 5.0708E-05 4589 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 77.387 74.164 110180000 5748000 4594000 6657100 0 0 0 0 0 0 5848200 6574500 8761300 0 0 0 2337500 3193100 0 12726000 9700900 12643000 13011000 0 18383000 10389 215 10118 193875;193876;193877;193878;193879;193880;193881;193882;193883;193884;193885;193886;193887;193888 119821;119822;119823 119823 3 ISNVELSK Unmodified 888.49165 0.49164694 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.584 15.166 2 0.00045865 4070 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 137.9 68.728 462090000 67478000 59664000 55119000 1025100 934340 951590 15490000 17368000 17020000 1244600 1098200 0 11111000 9106900 9192800 60715000 40149000 46910000 13662000 16960000 15838000 1054700 0 0 10390 733 10119 193889;193890;193891;193892;193893;193894;193895;193896;193897;193898;193899;193900;193901;193902;193903;193904;193905;193906;193907;193908;193909 119824;119825;119826;119827;119828;119829 119824 6 ISNVELSKR Unmodified 1044.5928 0.59275797 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 12.689 12.677 2 2.5011E-11 2880 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 215.88 151.12 107390000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67253000 19254000 20883000 0 0 0 0 0 0 10391 733 10120 193910;193911;193912 119830;119831;119832 119830 3 ISNVPVPEDK Unmodified 1096.5764 0.57643921 1897 P77318 ydeN Uncharacterized sulfatase YdeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 18.447 19.09 2 0.0002684 7071 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.97 111.81 149870000 42913000 46594000 39600000 0 0 0 0 3285500 4849000 0 0 0 1998000 3315000 3185200 0 0 0 2060600 2070500 0 0 0 0 10392 1897 10121 193913;193914;193915;193916;193917;193918;193919;193920;193921;193922 119833;119834;119835 119834 3 ISPEAPVPVVK Unmodified 1134.6649 0.66486028 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.478 26.306 2 0.0015943 12367 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.264 63.003 1275300000 128660000 114370000 110480000 0 0 0 93715000 99625000 107130000 18010000 17133000 15329000 109760000 98958000 94874000 1575800 0 1960100 0 135740000 128020000 0 0 0 10393 1880 10122 193923;193924;193925;193926;193927;193928;193929;193930;193931;193932;193933;193934;193935;193936;193937;193938 119836;119837;119838;119839;119840;119841;119842;119843;119844;119845;119846;119847;119848 119838 13 ISPHQLGLADVLSALR Unmodified 1688.9574 0.95735391 1460 P37182 hybD Hydrogenase 2 maturation protease yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.712 49.304 3 9.881E-14 24362 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 162.14 157.67 841740000 8617200 7911600 7875600 0 0 0 84710000 98771000 84168000 5449900 4716100 7431300 82301000 79453000 78805000 0 0 0 99998000 92400000 96051000 0 0 3077700 10394 1460 10123 193939;193940;193941;193942;193943;193944;193945;193946;193947;193948;193949;193950;193951;193952;193953;193954 119849;119850;119851;119852;119853;119854;119855;119856;119857;119858;119859 119852 10 ISPMAVEEVIEMQGLSLDPTSHR Unmodified 2538.2458 0.24580929 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 2 2 2 1 1 1 2 2 2 1 54.212 52.974 3;4 1.3151E-15 25740 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 152.13 145.7 1981300000 0 0 15917000 0 0 0 17985000 112220000 24131000 0 7075800 0 277480000 232520000 279590000 13827000 10199000 16936000 318250000 313050000 326640000 0 15512000 0 10395 946 10124 193955;193956;193957;193958;193959;193960;193961;193962;193963;193964;193965;193966;193967;193968;193969;193970;193971;193972;193973;193974;193975;193976 119860;119861;119862;119863;119864;119865;119866;119867;119868;119869;119870;119871;119872;119873 119867 13 ISQATGSTEIDR Unmodified 1276.6259 0.62590859 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.383 13.995 2 6.8729E-07 4263 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 175.86 150.94 175260000 5102200 6374200 4984800 1590600 1704200 1688300 8437100 8845500 7127000 5797900 6861600 6437300 12331000 14294000 13327000 1919800 1588500 1983500 17710000 17721000 19927000 2353800 3157700 3992500 10396 1940 10125 193977;193978;193979;193980;193981;193982;193983;193984;193985;193986;193987;193988;193989;193990;193991;193992;193993;193994;193995;193996;193997;193998;193999;194000 119874;119875;119876;119877 119877 4 ISQLQEQER Unmodified 1129.5728 0.57275081 1995 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 17.016 17.768 2 0.0066986 6028 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 69.998 55.88 5534500000 565740000 548320000 503330000 668910 0 0 642720000 644150000 609830000 0 0 0 310730000 264060000 270030000 0 0 0 424610000 395280000 354990000 0 0 0 + 10397 1995 10126 194001;194002;194003;194004;194005;194006;194007;194008;194009;194010;194011;194012;194013;194014;194015;194016;194017;194018;194019;194020;194021;194022;194023;194024;194025 119878;119879;119880;119881;119882;119883;119884;119885;119886;119887;119888;119889;119890 119889 12 ISQSVDDVDFFYAPADFR Unmodified 2090.9585 0.9585357 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.91 51.59 2 2.5323E-09 25454 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.08 112.76 80464000 15447000 10587000 12825000 0 0 0 4947600 0 5179300 2634700 1303900 1235500 3908100 4215600 5182500 2390100 0 0 6228500 0 4378400 0 0 0 10398 1213 10127 194026;194027;194028;194029;194030;194031;194032;194033;194034;194035;194036;194037;194038;194039 119891 119891 1 ISQVPTHDVGPYQNVPSKPVVILSAK Unmodified 2772.5174 0.51741477 952 P0AFL3 ppiA Peptidyl-prolyl cis-trans isomerase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.842 30.503 3;4 1.252E-15 14356 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 145.66 122.45 6208000000 470660000 547910000 504140000 0 0 0 537190000 484110000 483240000 0 0 0 421330000 413720000 426830000 0 0 0 622590000 678320000 618000000 0 0 0 10399 952 10128 194040;194041;194042;194043;194044;194045;194046;194047;194048;194049;194050;194051;194052;194053;194054;194055;194056;194057;194058;194059;194060;194061;194062;194063 119892;119893;119894;119895;119896;119897;119898;119899;119900;119901;119902;119903;119904;119905;119906;119907;119908;119909;119910;119911;119912;119913 119899 22 ISSGLPIFAMSR Unmodified 1277.6802 0.68019277 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.15 44.5 2 0.031203 15866 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 55.353 44.201 1397100000 70275000 58981000 0 6048500 5453200 4457100 125800000 133170000 140600000 3951700 7222600 8267600 160270000 140250000 132170000 0 0 0 115800000 127450000 136420000 5016900 7621500 7836400 10400 1184 10129 194064;194065;194066;194067;194068;194069;194070;194071;194072;194073;194074;194075;194076;194077;194078;194079;194080;194081;194082;194083 119914;119915 119915 0 ISSKPLMLPNR Unmodified 1254.7118 0.71182725 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.964 20.25 3 0.021902 6406 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 47.288 31.034 103310000 6427400 4571600 0 1099400 0 0 12503000 9388200 10911000 0 3480500 3483700 8608200 8296700 6929100 0 0 0 10198000 6964400 4692600 2422700 1512400 1823600 10401 633 10130 194084;194085;194086;194087;194088;194089;194090;194091;194092;194093;194094;194095;194096;194097;194098;194099;194100 119916;119917;119918;119919;119920;119921;119922;119923 119916 8 ISSLESLEK Unmodified 1004.539 0.53899107 1673 P64467 cnu OriC-binding nucleoid-associated protein yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 23.161 22.511 2 0.0014018 9823 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 88.819 43.484 237930000 38082000 0 29857000 0 0 0 1856000 0 0 0 0 0 29447000 26292000 29509000 0 0 0 23739000 32046000 27104000 0 0 0 10402 1673 10131 194101;194102;194103;194104;194105;194106;194107;194108;194109 119924;119925;119926;119927;119928;119929;119930;119931 119924 8 ISSQHIANWLR Unmodified 1323.7048 0.70476804 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.469 24.42 2;3 1.3492E-14 10878 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 219.19 199.92 1199100000 239160000 210170000 187100000 0 0 0 85453000 54755000 52766000 0 0 0 47843000 38257000 36226000 0 0 0 69298000 83623000 94461000 0 0 0 10403 1465 10132 194110;194111;194112;194113;194114;194115;194116;194117;194118;194119;194120;194121;194122;194123;194124;194125;194126;194127;194128;194129;194130;194131;194132;194133 119932;119933;119934;119935;119936;119937;119938;119939;119940;119941;119942;119943;119944;119945;119946;119947;119948;119949;119950 119940 19 ISSTAVR Unmodified 732.413 0.41300269 983 P0AG40 ribF Riboflavin biosynthesis protein RibF;Riboflavin kinase;FMN adenylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.905 11.731 2 0.005062 2955 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.21 68.283 184390000 26545000 24194000 23004000 0 0 0 0 13859000 12205000 0 0 0 12736000 13335000 12326000 0 0 0 18173000 13571000 14441000 0 0 0 10404 983 10133 194134;194135;194136;194137;194138;194139;194140;194141;194142;194143;194144 119951;119952;119953 119951 3 ISSVLAGGSCR Unmodified 1105.555 0.55499226 6;12 CON__P02533;CON__P08779 no no 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 17.773 17.628 2 0.00017329 5255 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 95.642 76.951 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 10405 6;12 10134 194145;194146;194147 119954;119955;119956 119955 3 ISTEVDAR Unmodified 889.45051 0.45051041 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.623 13.373 2 0.00017407 3908 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.35 77.504 11645000000 703740000 708470000 733690000 4275300 2965300 0 1372100000 1227800000 971450000 3763300 2532200 2713200 1129000000 1045900000 949850000 0 0 0 963260000 897500000 926370000 0 0 0 10406 402 10135 194148;194149;194150;194151;194152;194153;194154;194155;194156;194157;194158;194159;194160;194161;194162;194163;194164 119957;119958;119959;119960;119961;119962;119963;119964;119965;119966;119967;119968;119969 119961 13 ISTPPVLK Unmodified 853.5273 0.52730417 160 P07363 cheA Chemotaxis protein CheA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 22.157 22.148 2 0.0039159 9066 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 89.123 75.615 74621000 19215000 21017000 19318000 4786500 5328700 4956500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10407 160 10136 194165;194166;194167;194168;194169;194170 119970;119971;119972 119971 3 ISTTLLNLMER Unmodified 1289.7013 0.70132214 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 45.622 44.242 2 2.5427E-08 21526 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 178.55 172.24 336910000 110430000 110030000 83548000 0 0 0 0 2529700 0 0 0 0 5471200 0 6032400 0 0 0 5656900 7261800 5954300 0 0 0 10408 1168 10137 194171;194172;194173;194174;194175;194176;194177;194178;194179 119973;119974;119975 119974 3 ISTVPEAVEMQSR Unmodified 1445.7184 0.71842877 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 2 2 2 2 1 2 27.198 26.08 2;3 4.879E-07 11836 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 164.65 159.71 3932500000 419880000 389960000 320490000 4016400 5013700 5800000 145980000 156520000 157900000 0 0 0 280450000 272230000 245660000 976670 572070 468880 506080000 496540000 484600000 20501000 2922900 15977000 10409 937 10138 194180;194181;194182;194183;194184;194185;194186;194187;194188;194189;194190;194191;194192;194193;194194;194195;194196;194197;194198;194199;194200;194201;194202;194203;194204;194205;194206;194207;194208;194209;194210;194211;194212;194213;194214 119976;119977;119978;119979;119980;119981;119982;119983;119984;119985;119986;119987;119988;119989;119990;119991;119992;119993;119994;119995;119996;119997;119998;119999;120000;120001 119983 26 ISTWLELMK Unmodified 1119.5998 0.59981719 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.849 46.561 2 2.1541E-05 17393 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 178.99 157.46 2528100000 132480000 137660000 148060000 3772300 2464900 3047500 29170000 30429000 36385000 1939000 4537100 4895600 73745000 70929000 65412000 581720000 396400000 467140000 112880000 109200000 101450000 5068600 5410900 3868800 10410 729 10139 194215;194216;194217;194218;194219;194220;194221;194222;194223;194224;194225;194226;194227;194228;194229;194230;194231;194232;194233;194234;194235;194236;194237;194238;194239 120002;120003;120004;120005;120006;120007;120008;120009;120010;120011;120012;120013;120014;120015;120016;120017;120018;120019;120020;120021;120022;120023;120024 120002 23 ISVDSATMMNK Unmodified 1195.5577 0.55769437 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 23.498 22.798 2 0.0028763 9974 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 67.113 60.377 64444000 4726000 0 6905600 0 0 0 4415000 0 7807100 0 0 0 8312500 9190000 7575700 0 0 0 5828200 0 9683500 0 0 0 10411 1575 10140 194240;194241;194242;194243;194244;194245;194246;194247;194248 120025;120026;120027;120028 120026 3 ISVMGHGMGIPSCSIYTK Unmodified 1936.9209 0.9209101 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 1 2 2 2 34.204 32.767 2;3 4.0029E-23 16022 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 241.76 236.38 1763100000 67075000 74769000 76303000 0 0 0 44925000 56457000 462730000 0 0 0 66944000 58732000 57646000 0 0 0 263680000 282390000 251420000 0 0 0 10412 669 10141 194249;194250;194251;194252;194253;194254;194255;194256;194257;194258;194259;194260;194261;194262;194263;194264;194265;194266;194267;194268;194269;194270 120029;120030;120031;120032;120033;120034;120035;120036;120037;120038;120039 120029 11 ISVTSLISASAQGK Unmodified 1360.7562 0.75619449 187 P08390 usg USG-1 protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.076 37.443 2 7.9896E-08 18670 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.31 134.86 352740000 38141000 25150000 30613000 1337700 1510400 1418200 33188000 30767000 34723000 0 2019300 1941300 31811000 27207000 26262000 2883500 0 2492600 16732000 15101000 15901000 5385000 4250800 3903400 10413 187 10142 194271;194272;194273;194274;194275;194276;194277;194278;194279;194280;194281;194282;194283;194284;194285;194286;194287;194288;194289;194290;194291;194292 120040;120041;120042;120043;120044;120045;120046 120040 1 ISVVEVMGR Unmodified 988.53755 0.53755128 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.107 30.751 2 6.0871E-06 14940 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 172.14 137.32 3690900000 316780000 275640000 243110000 0 1360400 0 471380000 508550000 494960000 0 0 0 231860000 195440000 208380000 0 0 0 254420000 231740000 257320000 0 0 0 10414 320 10143 194293;194294;194295;194296;194297;194298;194299;194300;194301;194302;194303;194304;194305 120047;120048;120049;120050;120051;120052;120053;120054 120047 7 ISVVGMYR Unmodified 923.48987 0.48987281 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.273 26.264 2 2.7573E-06 12356 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 183.43 168.65 5780900000 507770000 488320000 473360000 6741200 4084300 5551300 266260000 275430000 285260000 0 0 0 487150000 527330000 491080000 4637800 2898300 2983500 643030000 658690000 645040000 0 0 5290300 10415 424 10144 194306;194307;194308;194309;194310;194311;194312;194313;194314;194315;194316;194317;194318;194319;194320;194321;194322;194323;194324 120055;120056;120057;120058;120059;120060;120061;120062;120063;120064;120065;120066;120067;120068;120069;120070;120071;120072 120058 18 ISVVGMYR Oxidation (M) 939.48479 0.48478743 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 20.406 20.86 2 0.0042079 7935 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.262 88.032 47390000 0 0 0 0 0 0 5270900 0 3447700 0 0 0 7314800 4512700 3638600 0 0 0 8213100 7342500 7649200 0 0 0 10416 424 10144 194325;194326;194327;194328;194329;194330;194331;194332 120073;120074;120075 120074 209 2 ISWMEIYTGEK Unmodified 1355.6431 0.64313856 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.667 44.211 2 1.9518E-07 21441 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 166.34 139.08 9039000000 1505300000 1317200000 1264100000 1436700 1189000 1725700 324610000 347890000 335910000 0 0 0 559110000 560910000 553090000 0 0 0 721580000 798100000 746880000 0 0 0 10417 179 10145 194333;194334;194335;194336;194337;194338;194339;194340;194341;194342;194343;194344;194345;194346;194347 120076;120077;120078;120079;120080;120081;120082;120083;120084;120085;120086;120087 120083 12 ISWMEIYTGEK Oxidation (M) 1371.6381 0.63805318 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 2 1 2 39.317 37.636 2 0.0010563 18778 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.662 77.662 81483000 8948400 8644000 7233700 0 0 0 5711300 4559400 3055700 0 0 0 3956100 0 3973700 0 0 0 15144000 5570900 14686000 0 0 0 10418 179 10145 194348;194349;194350;194351;194352;194353;194354;194355;194356;194357;194358;194359;194360 120088;120089 120088 55 1 ISYISTGGGAFLEFVEGK Unmodified 1873.9462 0.9461801 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 2 2 2 3 2 2 2 2 54.288 52.855 2;3 1.0483E-13 25848 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 147.18 142.19 3511800000 261410000 234120000 205710000 0 4445700 7276400 597300000 571370000 61478000 0 0 0 249980000 203910000 233370000 0 0 0 330470000 272290000 278680000 0 0 0 10419 321 10146 194361;194362;194363;194364;194365;194366;194367;194368;194369;194370;194371;194372;194373;194374;194375;194376;194377;194378;194379;194380;194381;194382;194383;194384;194385;194386;194387;194388;194389;194390;194391 120090;120091;120092;120093;120094;120095;120096;120097;120098;120099;120100;120101;120102;120103;120104;120105;120106;120107;120108;120109;120110 120095 21 ISYNLLR Unmodified 877.50215 0.50215205 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.259 27.791 2 0.00080871 12322 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 144.29 89.77 1846300000 229640000 259380000 220080000 1362200 1610900 1022500 146900000 137470000 133890000 2250300 2439400 2274600 93023000 88982000 101760000 0 0 0 146740000 142730000 133870000 0 0 863050 10420 1872 10147 194392;194393;194394;194395;194396;194397;194398;194399;194400;194401;194402;194403;194404;194405;194406;194407;194408;194409;194410 120111;120112;120113;120114;120115;120116;120117;120118;120119;120120 120119 10 ITAAPVVDENGK Unmodified 1212.635 0.63501672 1135 P17115 gutQ Arabinose 5-phosphate isomerase GutQ yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 17.841 18.473 2 2.0197E-06 7060 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 144.65 132.44 54326000 0 0 0 0 0 0 8146700 7118800 6983400 0 0 0 5536400 3009900 4074800 0 0 0 5563200 6686700 7205600 0 0 0 10421 1135 10148 194411;194412;194413;194414;194415;194416;194417;194418;194419 120121;120122 120121 2 ITAFIYKK Unmodified 982.58515 0.5851534 1829 P76177 ydgH Protein YdgH yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 18.889 19.057 2 0.021754 5974 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 67.032 67.032 20170000 0 0 0 3014400 3294900 3307200 0 0 0 2840700 2651500 2211000 0 0 0 0 0 0 0 0 0 2850200 0 0 10422 1829 10149 194420;194421;194422;194423;194424;194425;194426 120123 120123 1 ITAIDTHWIWQEGNQR Unmodified 1966.965 0.96495848 881 P0AES2 gudD Glucarate dehydratase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.006 39.39 3 0.10122 19519 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 34.909 28.493 155070000 22918000 19975000 15364000 0 0 0 0 16004000 20270000 0 0 0 12604000 8603900 11140000 0 0 0 9162400 8891300 10140000 0 0 0 10423 881 10150 194427;194428;194429;194430;194431;194432;194433;194434;194435;194436;194437 120124 120124 0 ITAILPVTEFEEGVK Unmodified 1644.8974 0.89743899 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 50.015 48.696 2;3 3.572E-09 24232 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.11 147.72 3694200000 231430000 220550000 200940000 9608400 10351000 9381300 266040000 242590000 229020000 62423000 68597000 61948000 315680000 261480000 272560000 19189000 12874000 15865000 370670000 348890000 368710000 34423000 31058000 29921000 10424 882 10151 194438;194439;194440;194441;194442;194443;194444;194445;194446;194447;194448;194449;194450;194451;194452;194453;194454;194455;194456;194457;194458;194459;194460;194461;194462;194463;194464;194465;194466;194467;194468;194469;194470;194471;194472;194473;194474;194475;194476;194477 120125;120126;120127;120128;120129;120130;120131;120132;120133;120134;120135;120136;120137;120138;120139;120140;120141;120142;120143;120144;120145;120146;120147 120133 23 ITAIMGPSGIGK Unmodified 1143.6322 0.63217995 1663 P63386 mlaF Probable phospholipid import ATP-binding protein MlaF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.507 28.046 2 0.0010952 10526 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 76.143 64.374 170620000 6858800 3437000 4650400 1053100 833310 880720 16020000 16960000 15261000 0 3757600 4587300 16867000 0 18336000 0 0 0 20215000 16269000 15507000 3039700 2926400 3162000 10425 1663 10152 194478;194479;194480;194481;194482;194483;194484;194485;194486;194487;194488;194489;194490;194491;194492;194493;194494;194495;194496 120148;120149;120150 120149 2 ITANQNLIIAGVPESEK Unmodified 1795.968 0.96797818 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 1 2 2 35.907 34.279 2;3 7.0235E-31 16435 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 225.86 215.25 1527300000 155680000 145930000 123510000 3083200 2744700 2514800 123770000 132170000 109350000 0 2445700 1303200 105230000 102490000 99940000 1139200 0 0 132690000 128750000 137160000 4363600 6719600 6345300 10426 1143 10153 194497;194498;194499;194500;194501;194502;194503;194504;194505;194506;194507;194508;194509;194510;194511;194512;194513;194514;194515;194516;194517;194518;194519;194520;194521;194522;194523;194524;194525;194526;194527;194528;194529;194530;194531;194532;194533;194534 120151;120152;120153;120154;120155;120156;120157;120158;120159;120160;120161;120162;120163;120164;120165 120155 15 ITATIEK Unmodified 774.44872 0.4487195 1415 P33230 rcbA Double-strand break reduction protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 13.844 13.91 2 0.014893 3458 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 82.305 45.277 13694000 0 0 0 0 0 0 0 0 0 0 734870 851920 0 0 0 4457800 3282800 4367000 0 0 0 0 0 0 10427 1415 10154 194535;194536;194537;194538;194539 120166 120166 1 ITAVIPYFGYAR Unmodified 1369.7394 0.73942221 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 1 2 2 1 2 2 2 2 2 2 1 2 2 1 1 2 45.537 44.216 2;3 5.1711E-12 22830 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 195.17 191.6 2025000000 153460000 130630000 116230000 21850000 24355000 21518000 108560000 106380000 91173000 26843000 23698000 4303500 137450000 133220000 128110000 81296000 57579000 68623000 141640000 139520000 143330000 57127000 52588000 55464000 10428 300 10155 194540;194541;194542;194543;194544;194545;194546;194547;194548;194549;194550;194551;194552;194553;194554;194555;194556;194557;194558;194559;194560;194561;194562;194563;194564;194565;194566;194567;194568;194569;194570;194571;194572;194573;194574;194575;194576;194577;194578;194579;194580 120167;120168;120169;120170;120171;120172;120173;120174;120175;120176;120177;120178;120179;120180;120181;120182;120183;120184;120185;120186;120187;120188;120189 120172 23 ITAYADELLNDLDKLDHWPDTVK Unmodified 2684.3334 0.33336197 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 2 2 2 54.158 52.82 3;4 1.408E-35 25710 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 214.35 211.68 4957800000 452250000 427610000 433520000 4361300 3019900 0 313700000 308160000 304740000 0 3816300 3957500 403400000 400820000 377500000 2818000 0 4423700 483430000 488670000 541630000 0 0 0 10429 170 10156 194581;194582;194583;194584;194585;194586;194587;194588;194589;194590;194591;194592;194593;194594;194595;194596;194597;194598;194599;194600;194601;194602;194603;194604;194605;194606;194607;194608;194609;194610 120190;120191;120192;120193;120194;120195;120196;120197;120198;120199;120200;120201;120202;120203;120204;120205;120206;120207;120208 120200 19 ITCVYDPENGENIAR Unmodified 1749.7992 0.79919829 1529 P39353 yjhC Uncharacterized oxidoreductase YjhC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.096 26.908 2 1.859E-11 12268 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 166.14 161.16 91568000 15980000 14740000 15067000 0 0 0 7476900 7634000 6331800 0 0 0 4207700 2967600 5171300 0 0 0 5081100 6909200 0 0 0 0 10430 1529 10157 194611;194612;194613;194614;194615;194616;194617;194618;194619;194620;194621 120209;120210;120211;120212;120213 120210 5 ITDAASAAALMTEMPAIIK Unmodified 1916.9951 0.9951209 1235 P24178 yffB Protein YffB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 54.158 52.785 2 2.5164E-22 25857 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 181.76 168.8 261950000 22815000 22691000 24094000 0 0 0 0 0 0 0 0 0 39649000 33712000 35331000 0 0 0 0 42762000 40900000 0 0 0 10431 1235 10158 194622;194623;194624;194625;194626;194627;194628;194629 120214;120215;120216;120217;120218 120214 5 ITDAYAENPQIANLLLAPYFK Unmodified 2364.2365 0.23654846 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.065 53.592 2;3 9.4294E-28 25566 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 255.85 250.31 8123200000 490420000 437490000 465230000 0 0 0 659360000 626600000 604800000 0 0 0 767230000 756610000 722720000 0 0 0 920580000 849360000 822840000 0 0 0 10432 24 10159 194630;194631;194632;194633;194634;194635;194636;194637;194638;194639;194640;194641;194642;194643;194644;194645;194646;194647;194648;194649;194650;194651;194652;194653 120219;120220;120221;120222;120223;120224;120225;120226;120227;120228;120229;120230;120231;120232;120233 120231 14 ITDIITPSER Unmodified 1143.6136 0.61355299 1105 P15070 fliN Flagellar motor switch protein FliN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.379 23.528 2 4.7482E-05 10177 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.14 99.408 135350000 30097000 30205000 27341000 5032300 5805200 5034200 0 0 0 0 0 0 5708700 5963400 5985300 0 0 0 3773800 5520800 4878300 0 0 0 10433 1105 10160 194654;194655;194656;194657;194658;194659;194660;194661;194662;194663;194664;194665 120234;120235;120236;120237;120238;120239 120239 6 ITDKQER Unmodified 888.46649 0.46649483 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 4.638 5.5745 2 0.0033329 791 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 121.29 62.311 319070000 0 0 0 8587200 7830500 7769500 47195000 49756000 40984000 0 0 0 17170000 0 14740000 0 0 0 48842000 31275000 44924000 0 0 0 10434 107 10161 194666;194667;194668;194669;194670;194671;194672;194673;194674;194675;194676 120240;120241 120241 2 ITDLTDAQR Unmodified 1031.5247 0.52473799 203 P09148 galT Galactose-1-phosphate uridylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.663 16.415 2 7.5842E-05 5780 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 142.36 126.16 173630000 21740000 15807000 19972000 0 0 0 27653000 26219000 20777000 0 0 0 8303500 0 0 0 0 0 17566000 15589000 0 0 0 0 10435 203 10162 194677;194678;194679;194680;194681;194682;194683;194684;194685 120242 120242 1 ITDQTGK Unmodified 761.39193 0.3919329 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1 1 1 3 1 1 1 1 1 1 6.7708 7.4957 2 0.0017267 1083 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 124.89 83.967 626590000 838910 909720 0 0 0 0 117010000 101320000 112870000 17954000 18178000 15380000 50288000 35589000 33954000 0 0 0 45695000 39009000 34315000 0 0 3278500 10436 1747 10163 194686;194687;194688;194689;194690;194691;194692;194693;194694;194695;194696;194697;194698;194699;194700;194701;194702;194703;194704 120243;120244;120245;120246;120247;120248;120249;120250;120251;120252;120253 120248 11 ITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMAR Unmodified 3836.8172 0.8171799 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.736 53.518 4 5.9913E-56 21681 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 234.34 234.21 715010000 0 0 0 5354800 3692000 4521200 79237000 70132000 72251000 63736000 56230000 55617000 51888000 56556000 49484000 6664100 14546000 15184000 33707000 26498000 24956000 12982000 0 11777000 10437 25 10164 194705;194706;194707;194708;194709;194710;194711;194712;194713;194714;194715;194716;194717;194718;194719;194720;194721;194722;194723;194724 120254;120255;120256;120257;120258;120259;120260;120261 120255 8 ITDVCSLPLLVDADIGFGSSAFNVAR Unmodified 2736.3793 0.37926631 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 55.588 54.182 3 1.5379E-10 26825 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.39 117.87 96995000 31821000 32638000 32537000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10438 1914 10165 194725;194726;194727 120262 120262 1 ITDVEVLK Unmodified 915.5277 0.5276981 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.595 22.914 2 0.00087625 9867 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.41 103.97 32734000000 2435300000 2446300000 1987400000 17904000 14535000 14090000 2944300000 2748400000 2589700000 0 0 0 2539400000 2230700000 2548600000 0 0 17288000 3297000000 3558800000 3343900000 0 0 0 10439 267 10166 194728;194729;194730;194731;194732;194733;194734;194735;194736;194737;194738;194739;194740;194741;194742;194743;194744;194745 120263;120264;120265;120266;120267;120268;120269;120270;120271;120272;120273;120274;120275;120276;120277;120278;120279;120280;120281;120282 120277 20 ITDYRDVESLNMFAELR Unmodified 2071.0044 0.004440036 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.445 47.017 3 5.9947E-05 22706 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.545 70.944 69204000 0 0 0 0 1401900 0 8866800 5842200 6858700 0 0 0 8662000 8664400 0 0 0 0 0 9303500 12131000 2412500 2739800 2321200 10440 1324 10167 194746;194747;194748;194749;194750;194751;194752;194753;194754;194755;194756 120283 120283 1 ITEADGR Unmodified 760.37153 0.37153181 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.408 10.9 2 0.012523 2427 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 84.699 71.651 2486700000 0 0 0 0 0 0 25298000 0 0 0 602030000 519160000 3228400 0 0 0 0 134960000 819180 5086300 804000 417390000 357760000 420160000 10441 193 10168 194757;194758;194759;194760;194761;194762;194763;194764;194765;194766;194767 120284 120284 1 ITEAGLAYAHPFPLSCVQSDPDAEPYWR Unmodified 3189.4866 0.48658493 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.112 47.772 3 8.2178E-54 23401 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 245.49 245.1 582860000 57287000 48196000 51241000 0 0 0 83329000 75915000 69891000 0 0 0 39476000 30963000 40562000 0 0 0 24174000 30641000 31186000 0 0 0 10442 283 10169 194768;194769;194770;194771;194772;194773;194774;194775;194776;194777;194778;194779 120285;120286;120287;120288;120289;120290;120291;120292;120293;120294;120295;120296 120291 12 ITEALVECFAR Unmodified 1307.6544 0.65437195 1518 P39280 epmB L-lysine 2,3-aminomutase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.677 36.003 2 0.00075383 16711 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 86.898 56.211 81163000 9753500 8495500 6085500 0 0 0 6449500 6566300 5283000 0 0 0 4766600 5138000 3741700 0 0 0 9532900 6640600 8710000 0 0 0 10443 1518 10170 194780;194781;194782;194783;194784;194785;194786;194787;194788;194789;194790;194791 120297;120298;120299;120300;120301;120302 120301 0 ITECLFSGSLSALSEADFEQLAQDGVPMVEMEK Unmodified 3630.678 0.67795203 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.57 54.091 3 2.1788E-13 26562 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 115.54 115.06 234760000 23286000 0 14581000 0 0 0 14655000 14999000 15423000 0 0 0 26149000 22937000 21678000 0 0 0 25669000 26841000 28547000 0 0 0 10444 1024 10171 194792;194793;194794;194795;194796;194797;194798;194799;194800;194801;194802 120303 120303 1 ITEETLAK Unmodified 903.49131 0.49131259 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.806 14.46 2 8.7248E-05 4567 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.67 141.9 5674800000 582150000 416180000 348490000 0 0 0 786160000 784110000 739110000 2022100 2021400 1503900 333160000 322270000 294510000 1562900 0 0 374450000 359930000 327180000 0 0 0 10445 277 10172 194803;194804;194805;194806;194807;194808;194809;194810;194811;194812;194813;194814;194815;194816;194817;194818 120304;120305;120306;120307;120308;120309;120310;120311;120312;120313;120314;120315;120316 120305 13 ITEQEAQEMVDHLVMK Unmodified 1899.907 0.90703418 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 2 2 1 4 3 4 2 2 1 4 4 4 1 1 1 2 5 3 1 1 1 44.504 43.092 2;3 1.5158E-30 22046 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 279.77 257.72 32649000000 1438900000 1480000000 1285000000 20369000 21442000 16586000 3744900000 3894900000 3751800000 44495000 44181000 41768000 3421000000 3254100000 3116500000 14369000 24975000 26740000 2416000000 2383000000 2142500000 20300000 22475000 22802000 10446 212 10173 194819;194820;194821;194822;194823;194824;194825;194826;194827;194828;194829;194830;194831;194832;194833;194834;194835;194836;194837;194838;194839;194840;194841;194842;194843;194844;194845;194846;194847;194848;194849;194850;194851;194852;194853;194854;194855;194856;194857;194858;194859;194860;194861;194862;194863;194864;194865;194866;194867;194868;194869;194870;194871;194872;194873;194874;194875;194876;194877 120317;120318;120319;120320;120321;120322;120323;120324;120325;120326;120327;120328;120329;120330;120331;120332;120333;120334;120335;120336;120337;120338;120339;120340;120341;120342;120343;120344;120345;120346;120347;120348;120349;120350;120351;120352;120353;120354;120355;120356;120357;120358;120359;120360;120361;120362;120363;120364;120365;120366;120367;120368;120369;120370;120371;120372;120373 120343 57 ITEQEAQEMVDHLVMK Oxidation (M) 1915.9019 0.9019488 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 3 2 2 1 2 4 3 1 1 2 2 2 41.071 39.607 2;3 2.2005E-06 21484 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.624 87.286 896200000 0 35502000 21952000 0 0 0 161950000 128330000 124880000 0 2197500 0 72988000 118010000 68124000 825970 988820 0 52434000 58385000 49625000 0 0 0 10447 212 10173 194878;194879;194880;194881;194882;194883;194884;194885;194886;194887;194888;194889;194890;194891;194892;194893;194894;194895;194896;194897;194898;194899;194900;194901;194902;194903;194904;194905 120374;120375;120376;120377;120378;120379;120380;120381;120382;120383;120384;120385;120386;120387;120388;120389;120390;120391;120392;120393;120394;120395;120396;120397;120398 120382 72;73 24 ITEQGVHFR Unmodified 1085.5618 0.56179219 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 1 2 1 2 2 2 2 1 2 2 2 1 1 2 2 2 1 1 2 1 14.592 15.14 2;3 0.01365 4578 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 60.019 52.094 189950000 15829000 9365800 13330000 0 0 0 5400100 13357000 12806000 3181700 3300600 2422400 11326000 11609000 11445000 8430400 3233400 5755100 23479000 20522000 9377600 1404500 3489400 884970 10448 395 10174 194906;194907;194908;194909;194910;194911;194912;194913;194914;194915;194916;194917;194918;194919;194920;194921;194922;194923;194924;194925;194926;194927;194928;194929;194930;194931;194932;194933;194934;194935;194936;194937;194938;194939 120399;120400;120401;120402 120400 3 ITESEFLWQHNQDPMAVDK Unmodified 2287.0579 0.05793217 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 1 1 3 3 3 1 1 1 37.611 35.929 2;3;4 1.6249E-55 17680 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 350.14 339.03 17998000000 1447100000 1342500000 1225500000 2588000 3196200 2953000 1695100000 1561000000 1502700000 2945200 2890400 3408800 1623100000 1430000000 1491900000 2278100 2866200 0 1459600000 1622500000 1568800000 1742000 2151600 1442300 10449 402 10175 194940;194941;194942;194943;194944;194945;194946;194947;194948;194949;194950;194951;194952;194953;194954;194955;194956;194957;194958;194959;194960;194961;194962;194963;194964;194965;194966;194967;194968;194969;194970;194971;194972;194973;194974;194975;194976;194977;194978;194979;194980;194981;194982;194983;194984;194985;194986 120403;120404;120405;120406;120407;120408;120409;120410;120411;120412;120413;120414;120415;120416;120417;120418;120419;120420;120421;120422;120423;120424;120425;120426;120427;120428;120429;120430;120431;120432;120433;120434 120407 32 ITESEFLWQHNQDPMAVDK Oxidation (M) 2303.0528 0.052846792 402 P0A870 talB Transaldolase B yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 2 3 2 1 2 1 32.78 31.419 3 6.3309E-14 14673 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.09 133.91 515810000 31732000 37925000 20356000 0 0 0 60967000 31314000 54134000 0 0 0 48620000 60598000 39268000 0 0 0 37068000 61877000 31953000 0 0 0 10450 402 10175 194987;194988;194989;194990;194991;194992;194993;194994;194995;194996;194997;194998;194999;195000;195001;195002;195003;195004;195005;195006;195007 120435;120436;120437;120438;120439;120440;120441;120442;120443;120444;120445;120446;120447;120448;120449;120450;120451;120452 120441 195 17 ITESVFR Unmodified 850.45487 0.45486751 1198 P22524 mukE Chromosome partition protein MukE yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.615 20.806 2 0.0019383 8300 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 121.14 53.25 453790000 37147000 28970000 27276000 1563100 1489700 1744400 38065000 0 44828000 5797400 4991300 3851800 33756000 32652000 23946000 2392900 0 0 49461000 51312000 51698000 5093700 3706200 4047900 10451 1198 10176 195008;195009;195010;195011;195012;195013;195014;195015;195016;195017;195018;195019;195020;195021;195022;195023;195024;195025;195026;195027;195028 120453;120454;120455;120456;120457;120458;120459;120460;120461;120462 120457 8 ITEYEKDANGELVAK Unmodified 1678.8414 0.84138068 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 4 3 5 2 2 2 8 8 8 2 2 2 5 5 4 18.697 18.943 2;3 9.2671E-36 4906 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 301.93 292.5 42777000000 41180000 40273000 39563000 19339000 20012000 24341000 37340000 45110000 35919000 2922800000 2122700000 2403400000 34178000 35046000 29919000 9564400000 6552100000 7244100000 58708000 64367000 58557000 3799400000 3822600000 3761200000 10452 458 10177 195029;195030;195031;195032;195033;195034;195035;195036;195037;195038;195039;195040;195041;195042;195043;195044;195045;195046;195047;195048;195049;195050;195051;195052;195053;195054;195055;195056;195057;195058;195059;195060;195061;195062;195063;195064;195065;195066;195067;195068;195069;195070;195071;195072;195073;195074;195075;195076;195077;195078;195079;195080;195081;195082;195083;195084;195085;195086;195087;195088;195089;195090;195091;195092;195093;195094;195095;195096;195097;195098;195099;195100;195101;195102;195103;195104;195105;195106;195107;195108 120463;120464;120465;120466;120467;120468;120469;120470;120471;120472;120473;120474;120475;120476;120477;120478;120479;120480;120481;120482;120483;120484;120485;120486;120487;120488;120489;120490;120491;120492;120493;120494;120495;120496;120497;120498;120499;120500;120501;120502;120503;120504;120505;120506;120507;120508;120509;120510;120511;120512;120513;120514;120515;120516;120517;120518;120519;120520;120521;120522;120523;120524;120525;120526;120527;120528;120529;120530;120531;120532;120533;120534;120535;120536;120537;120538;120539 120472 74 ITEYNVELVK Unmodified 1206.6496 0.64960415 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.424 28.322 2 0.0002692 13050 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.89 49.648 130190000 35523000 32145000 27758000 0 0 0 0 0 0 0 0 0 4890300 5358300 5021100 0 0 0 5356500 5995400 8140100 0 0 0 10453 204 10178 195109;195110;195111;195112;195113;195114;195115;195116;195117 120540;120541;120542 120541 3 ITFIDGDEGILLHR Unmodified 1597.8464 0.84640648 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 4 4 1 1 1 4 4 4 1 1 1 4 3 2 1 4 4 4 1 1 1 42.92 41.244 2;3 4.1721E-11 20031 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.47 138.03 12331000000 2188700000 2327600000 2106300000 5672900 7413600 5740700 789240000 755460000 692650000 22339000 19104000 18600000 329110000 286440000 304920000 0 0 4506700 857500000 842790000 749240000 6015800 6839100 4914500 10454 657 10179 195118;195119;195120;195121;195122;195123;195124;195125;195126;195127;195128;195129;195130;195131;195132;195133;195134;195135;195136;195137;195138;195139;195140;195141;195142;195143;195144;195145;195146;195147;195148;195149;195150;195151;195152;195153;195154;195155;195156;195157;195158;195159;195160;195161;195162;195163;195164;195165;195166;195167;195168;195169;195170;195171;195172 120543;120544;120545;120546;120547;120548;120549;120550;120551;120552;120553;120554;120555;120556;120557 120553 12 ITFIGAGSTIFVK Unmodified 1352.7704 0.77038799 129 P06720 melA Alpha-galactosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.38 45.774 2 2.6202E-05 16405 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 106.29 101.99 71465000 10109000 8435400 9391000 5180300 4742200 4155900 0 0 0 5704500 5585200 5509400 0 0 0 0 0 0 0 0 0 4754700 3667100 4231000 10455 129 10180 195173;195174;195175;195176;195177;195178;195179;195180;195181;195182;195183;195184 120558;120559;120560;120561;120562;120563;120564;120565 120561 8 ITFNAPTVPVVNNVDVK Unmodified 1825.9938 0.993799 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 43.485 41.961 2;3 2.1349E-11 20274 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 156 154.93 5914000000 466450000 412940000 363680000 1344700 1494300 0 391590000 419630000 416080000 0 0 0 530750000 556980000 550840000 0 0 0 627020000 614260000 560990000 0 0 0 10456 597 10181 195185;195186;195187;195188;195189;195190;195191;195192;195193;195194;195195;195196;195197;195198;195199;195200;195201;195202;195203;195204;195205;195206;195207;195208;195209;195210 120566;120567;120568;120569;120570;120571;120572;120573;120574;120575;120576;120577;120578;120579;120580;120581;120582;120583;120584;120585;120586;120587;120588;120589 120576 24 ITFNVIPDPTTR Unmodified 1372.7351 0.73506511 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 42.231 40.508 2 8.4276E-09 19810 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 175.93 174.13 242450000 4274300 2675900 3034100 0 0 0 25717000 22921000 18958000 0 0 0 26116000 25390000 23247000 0 0 0 31303000 24445000 32503000 0 0 1862600 10457 1424 10182 195211;195212;195213;195214;195215;195216;195217;195218;195219;195220;195221;195222;195223 120590;120591;120592;120593 120591 4 ITGGDNDGK Unmodified 875.39847 0.39847484 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 6.9194 7.652 2 0.0012356 1499 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.698 72.136 186750000 70986000 60603000 55161000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10458 96 10183 195224;195225;195226 120594;120595 120594 2 ITGIDSSPAMIAEAR Unmodified 1530.7712 0.77119262 1823 P76145 tam Trans-aconitate 2-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 2 2 1 1 1 32.444 31.089 2;3 1.8822E-20 15650 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 218.62 198.86 648300000 72301000 70781000 61584000 0 0 0 274450000 23467000 19958000 0 0 0 6511800 46081000 43319000 0 0 0 11585000 7347000 10921000 0 0 0 10459 1823 10184 195227;195228;195229;195230;195231;195232;195233;195234;195235;195236;195237;195238;195239;195240;195241 120596;120597;120598;120599;120600;120601;120602;120603;120604;120605;120606 120604 11 ITGINNPNEAR Unmodified 1197.6102 0.61019895 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.543 15.155 2 1.2251E-07 4926 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 171.56 148.14 271670000 8372900 8700100 0 3169300 3114400 3415500 23923000 24261000 18735000 8377000 8172300 8129200 14007000 15635000 13012000 0 0 0 27522000 34066000 30374000 6480600 5064800 7135200 10460 997 10185 195242;195243;195244;195245;195246;195247;195248;195249;195250;195251;195252;195253;195254;195255;195256;195257;195258;195259;195260;195261 120607;120608;120609;120610;120611;120612;120613;120614;120615;120616;120617 120609 10 ITGIQITK Unmodified 872.53312 0.53311783 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.834 21.182 2 0.0012201 8774 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.67 84.781 288180000 25558000 24757000 20350000 0 0 0 54224000 53239000 58177000 0 0 0 8882600 7951900 8781700 0 0 0 9155600 8146600 8960600 0 0 0 10461 1717 10186 195262;195263;195264;195265;195266;195267;195268;195269;195270;195271;195272;195273 120618;120619;120620;120621 120618 3 ITGTARPLPAIK Unmodified 1236.7554 0.75540662 432 P0A8I1 yqgF Putative Holliday junction resolvase yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 17.395 18.182 3 0.067781 4926 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 36.32 31.804 8363100 0 0 0 3122500 3126000 2114600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10462 432 10187 195274;195275;195276 120622;120623 120622 2 ITGTPFEALVR Unmodified 1202.6659 0.66592292 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.951 39.24 2 0.00015967 13849 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 109.66 97.617 221840000 23710000 24492000 25614000 7789600 9055300 7181200 9090200 8829400 8370700 0 3999100 3258000 9691600 11186000 7282000 0 0 1010500 16420000 17313000 15991000 4625600 3871700 3060900 10463 335 10188 195277;195278;195279;195280;195281;195282;195283;195284;195285;195286;195287;195288;195289;195290;195291;195292;195293;195294;195295;195296;195297 120624;120625;120626;120627;120628;120629;120630;120631;120632;120633;120634;120635;120636;120637;120638;120639;120640 120633 11 ITHFDHER Unmodified 1053.4992 0.49919194 1174 P21179 katE Catalase HPII yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 1 2 10.437 11.235 2;3 4.4523E-05 2595 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.14 172.14 692610000 97971000 117000000 105540000 0 0 0 93852000 90134000 83819000 0 0 0 10550000 8464200 13206000 0 0 0 26480000 19399000 26191000 0 0 0 10464 1174 10189 195298;195299;195300;195301;195302;195303;195304;195305;195306;195307;195308;195309;195310;195311;195312;195313;195314;195315;195316;195317;195318 120641;120642;120643;120644 120644 4 ITHFVSSMGTTGTITGVSR Unmodified 1950.9833 0.98331066 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 27.737 26.612 2;3 1.1935E-37 12525 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 185.99 185.3 653210000 60135000 50871000 56265000 0 0 0 49510000 35542000 41449000 0 0 0 51959000 51025000 41333000 0 0 0 70429000 74228000 70463000 0 0 0 10465 1133 10190 195319;195320;195321;195322;195323;195324;195325;195326;195327;195328;195329;195330;195331 120645;120646;120647;120648;120649;120650;120651;120652;120653;120654;120655;120656 120645 12 ITHIPTGIVTQCQNDR Unmodified 1851.9261 0.92613014 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 22.875 22.34 2;3 6.9607E-09 9328 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.33 145.19 4065100000 352190000 319060000 340950000 2179500 2565000 2236900 332670000 324400000 342000000 0 0 0 349370000 270020000 296790000 0 0 0 368610000 369170000 392870000 0 0 0 10466 149 10191 195332;195333;195334;195335;195336;195337;195338;195339;195340;195341;195342;195343;195344;195345;195346;195347;195348;195349;195350;195351;195352;195353;195354;195355;195356;195357;195358 120657;120658;120659;120660;120661;120662;120663;120664;120665;120666;120667;120668;120669;120670;120671;120672;120673;120674;120675;120676;120677;120678;120679;120680;120681 120675 25 ITHLPTGIVVECQDER Unmodified 1865.9305 0.93054681 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 2 2 2 2 2 28.066 26.951 2;3 1.4038E-05 12354 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.647 79.168 406160000 81668000 66595000 74364000 0 1780100 0 37169000 0 27368000 0 0 0 4938600 3911000 29946000 0 0 0 4267100 38478000 35675000 0 0 0 10467 345 10192 195359;195360;195361;195362;195363;195364;195365;195366;195367;195368;195369;195370;195371;195372;195373;195374;195375;195376;195377;195378;195379;195380 120682;120683;120684;120685;120686;120687;120688;120689;120690;120691 120687 10 ITIAPQGPEFSR Unmodified 1314.6932 0.6932003 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 31.292 29.956 2 1.417E-08 13932 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 188.04 181.15 1060500000 147660000 122030000 108700000 0 0 0 82692000 85032000 98555000 0 0 0 68463000 62438000 55172000 0 0 0 90340000 72307000 67135000 0 0 0 10468 1830 10193 195381;195382;195383;195384;195385;195386;195387;195388;195389;195390;195391;195392;195393 120692;120693;120694;120695;120696;120697;120698;120699;120700;120701;120702 120699 10 ITIDPVTR Unmodified 913.52328 0.52328142 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.705 22.806 2 0.00081525 7935 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 121.99 63.008 774660000 0 0 0 0 0 1128800 209300000 202680000 189780000 38180000 28822000 37913000 0 0 0 10054000 7993800 6095600 0 0 0 22538000 0 20174000 10469 723 10194 195394;195395;195396;195397;195398;195399;195400;195401;195402;195403;195404;195405;195406 120703;120704;120705;120706;120707;120708;120709;120710 120705 8 ITIGLNLPSGEMGR Unmodified 1456.7708 0.77079869 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 43.349 41.846 2;3 5.0323E-11 20297 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 169.82 133.49 6311900000 2138700000 1922900000 1774400000 4031300 245780 3977600 8811400 10480000 9027500 0 0 0 35148000 34905000 34442000 0 0 0 110470000 112860000 111460000 0 0 0 10470 339 10195 195407;195408;195409;195410;195411;195412;195413;195414;195415;195416;195417;195418;195419;195420;195421;195422;195423;195424 120711;120712;120713;120714;120715 120715 5 ITIGLNLPSGEMGR Oxidation (M) 1472.7657 0.76571331 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 1 0 By MS/MS 1 39.533 38.126 2 0.0044004 18486 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 61.523 55.139 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10471 339 10195 195425 120716 120716 152 1 ITINRPQVR Unmodified 1095.6513 0.6512759 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 3 2 14.552 15.181 2;3 0.00015983 4971 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 134.81 121.77 4083400000 193390000 169410000 168990000 62445000 64348000 66098000 272670000 325740000 369390000 6639000 3732300 4948700 302000000 305100000 321090000 0 2278700 2124600 336240000 338690000 397480000 135150000 127110000 108320000 10472 679 10196 195426;195427;195428;195429;195430;195431;195432;195433;195434;195435;195436;195437;195438;195439;195440;195441;195442;195443;195444;195445;195446;195447;195448;195449;195450;195451;195452;195453;195454;195455;195456;195457;195458;195459;195460;195461;195462;195463;195464;195465;195466;195467 120717;120718;120719;120720;120721;120722;120723;120724;120725;120726;120727;120728;120729;120730;120731;120732;120733;120734;120735;120736;120737;120738;120739 120721 23 ITINYFAMPPSTFGAICK Unmodified 2030.0005 0.000540632 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.97 51.729 2 0.00011063 24542 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 93.958 90.811 162040000 17691000 13812000 13676000 0 0 0 15090000 12751000 12056000 0 972410 0 12178000 11757000 12228000 2260700 0 2512200 11731000 9979500 13352000 0 0 0 10473 702 10197 195468;195469;195470;195471;195472;195473;195474;195475;195476;195477;195478;195479;195480;195481;195482 120740;120741;120742;120743;120744;120745;120746;120747;120748;120749;120750;120751 120749 12 ITKEDIER Unmodified 1002.5346 0.53457439 665 P0ABK2 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 11.619 12.164 2 0.003252 2672 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 105.14 59.456 25871000 0 0 0 0 1277500 1222400 0 0 0 6236000 9027000 8107700 0 0 0 0 0 0 0 0 0 0 0 0 10474 665 10198 195483;195484;195485;195486;195487 120752;120753 120752 2 ITLALAGFR Unmodified 960.57565 0.57565135 1034 P0C058 ibpB Small heat shock protein IbpB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 42.199 40.164 2 0.0013776 16495 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 117.17 96.687 24852000 0 0 0 802760 835680 798990 2009000 0 1621400 3152700 2872300 2846900 0 0 2395200 0 0 0 0 2480700 0 1832800 1815900 1387300 10475 1034 10199 195488;195489;195490;195491;195492;195493;195494;195495;195496;195497;195498;195499;195500 120754 120754 0 ITLAQQWQAGDSIWSR Unmodified 1858.9326 0.93259572 77 P02943 lamB Maltoporin yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 47.781 46.031 2 1.4019E-14 18182 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 213.73 203.12 40893000 0 0 0 0 0 0 0 1698400 0 3378200 2708400 3157900 0 0 0 0 0 0 11197000 0 10786000 2879300 3009600 2078900 10476 77 10200 195501;195502;195503;195504;195505;195506;195507;195508;195509 120755;120756 120756 2 ITLAQQWQAGDSIWSRPAIR Unmodified 2296.2076 0.20764837 77 P02943 lamB Maltoporin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 44.595 42.396 3 1.0166E-14 17365 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 145.91 114.03 52774000 0 0 0 0 0 0 0 0 0 9108900 6215600 6392100 0 0 0 0 0 0 0 0 0 8830500 12830000 9396700 10477 77 10201 195510;195511;195512;195513;195514;195515 120757;120758;120759;120760;120761;120762 120757 6 ITLDPNGAWSLNEAIK Unmodified 1740.9046 0.90464964 881 P0AES2 gudD Glucarate dehydratase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 47.675 46.273 2 0.00022019 22925 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 102.62 70.778 58340000 10621000 9351600 6673800 0 0 0 7657100 0 9335700 0 0 0 5121800 5724900 3854100 0 0 0 0 0 0 0 0 0 10478 881 10202 195516;195517;195518;195519;195520;195521;195522;195523;195524 120763;120764;120765 120764 2 ITLHGPLDQPTLK Unmodified 1431.8086 0.80856441 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 28.447 27.2 2;3 4.2845E-07 12932 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 115.24 109.92 1583900000 169440000 135660000 146000000 0 0 0 143070000 145400000 147160000 0 0 0 110250000 99492000 95452000 0 0 0 123930000 133620000 134450000 0 0 0 10479 111 10203 195525;195526;195527;195528;195529;195530;195531;195532;195533;195534;195535;195536;195537;195538;195539;195540;195541;195542;195543;195544;195545;195546;195547;195548 120766;120767;120768;120769;120770;120771;120772;120773;120774;120775;120776;120777;120778;120779;120780 120766 11 ITLIENK Unmodified 829.49092 0.49091866 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 3 3 3 1 1 2 2 2 2 1 1 1 3 3 3 1 2 2 19.203 19.569 2 0.00029767 7593 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 158.38 102.78 1942700000 217880000 187680000 164030000 11267000 10386000 11054000 135330000 147730000 173590000 13889000 10332000 10334000 101870000 98774000 88593000 2639500 3304000 2685200 167890000 173870000 178970000 8824300 9509600 12230000 10480 279 10204 195549;195550;195551;195552;195553;195554;195555;195556;195557;195558;195559;195560;195561;195562;195563;195564;195565;195566;195567;195568;195569;195570;195571;195572;195573;195574;195575;195576;195577;195578;195579;195580;195581;195582;195583;195584;195585;195586;195587;195588;195589;195590;195591;195592;195593 120781;120782;120783;120784;120785;120786;120787;120788;120789;120790;120791;120792;120793;120794;120795;120796;120797;120798;120799 120791 15 ITLKPGETQTVSFPIDIEALK Unmodified 2299.2675 0.26751424 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 48.78 47.443 2;3 6.1489E-11 23087 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 102.48 99.718 917710000 56589000 53443000 44240000 0 0 0 91405000 92613000 95811000 0 0 0 64768000 76510000 64988000 0 0 0 94744000 89145000 93454000 0 0 0 10481 1421 10205 195594;195595;195596;195597;195598;195599;195600;195601;195602;195603;195604;195605;195606;195607;195608;195609;195610;195611;195612;195613;195614;195615;195616 120800;120801;120802;120803;120804;120805;120806;120807;120808;120809;120810;120811;120812 120803 13 ITLNMGVGEAIADK Unmodified 1430.7439 0.74391524 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.818 37.091 2 1.6458E-19 18278 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 208.72 187.85 302240000 40959000 34313000 33837000 0 0 2211300 20575000 19778000 15080000 0 0 0 0 23138000 24489000 0 0 0 0 45112000 34815000 7936100 0 0 10482 1644 10206 195617;195618;195619;195620;195621;195622;195623;195624;195625;195626;195627;195628;195629;195630;195631 120813;120814;120815;120816;120817;120818;120819;120820;120821;120822;120823;120824;120825 120815 13 ITLNMGVGEAIADKK Unmodified 1558.8389 0.83887826 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 3 2 2 2 3 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 31.326 29.964 2;3 1.6174E-11 14123 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 187.44 150.75 4130200000 477100000 363370000 386140000 57395000 50270000 52820000 159100000 133260000 176020000 149630000 119700000 88544000 179710000 186190000 166780000 93239000 67514000 71065000 303950000 291340000 290130000 86678000 88567000 91667000 10483 1644 10207 195632;195633;195634;195635;195636;195637;195638;195639;195640;195641;195642;195643;195644;195645;195646;195647;195648;195649;195650;195651;195652;195653;195654;195655;195656;195657;195658;195659;195660;195661;195662;195663;195664;195665;195666;195667;195668;195669;195670;195671;195672;195673;195674;195675;195676;195677;195678;195679;195680;195681;195682;195683;195684 120826;120827;120828;120829;120830;120831;120832;120833;120834;120835;120836;120837;120838;120839;120840;120841;120842;120843;120844;120845;120846;120847;120848;120849;120850;120851;120852;120853;120854;120855;120856;120857;120858;120859;120860;120861;120862;120863;120864;120865;120866;120867;120868;120869;120870;120871;120872;120873;120874 120849 47 ITLPVDPHLEITEIADR Unmodified 1931.0364 0.036392091 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.194 46.945 3 9.32E-07 18730 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 100.41 95.318 558210000 54732000 51171000 41062000 11857000 13646000 11801000 30173000 25943000 21952000 15314000 18765000 19714000 20158000 20149000 19858000 7085200 5701800 9935000 34764000 35246000 40447000 18384000 16266000 14088000 10484 582 10208 195685;195686;195687;195688;195689;195690;195691;195692;195693;195694;195695;195696;195697;195698;195699;195700;195701;195702;195703;195704;195705;195706;195707;195708 120875;120876;120877;120878;120879;120880;120881;120882;120883;120884 120877 9 ITLQNGK Unmodified 772.4443 0.44430282 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 11.869 12.696 2 0.0021123 3551 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.06 71.011 588040000 0 112530000 90027000 7541200 6997800 6850300 31691000 37086000 32702000 0 0 726190 53178000 39151000 35624000 0 0 0 67246000 64207000 0 0 1114500 1366200 10485 179 10209 195709;195710;195711;195712;195713;195714;195715;195716;195717;195718;195719;195720;195721;195722;195723;195724;195725;195726;195727;195728;195729 120885;120886;120887;120888;120889;120890;120891;120892;120893 120890 6 ITLSTQPADAR Unmodified 1171.6197 0.619701 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.882 19.447 2 5.8469E-11 7360 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 200.05 156.61 3503800000 281980000 239240000 199100000 0 0 0 340810000 316510000 329890000 0 0 0 325290000 285170000 257510000 0 0 0 323130000 316910000 288320000 0 0 0 10486 1456 10210 195730;195731;195732;195733;195734;195735;195736;195737;195738;195739;195740;195741 120894;120895;120896;120897;120898;120899;120900;120901;120902;120903 120897 8 ITLVQGLNR Unmodified 1012.6029 0.60292873 1397 P32684 rluF Ribosomal large subunit pseudouridine synthase F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.312 27.044 2 0.11998 12798 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 45.081 34.614 75654000 8032700 9486600 9052900 500250 0 0 6506800 5401000 5482200 0 0 0 4686300 3896100 4623000 0 0 0 5964400 6846000 5176400 0 0 0 10487 1397 10211 195742;195743;195744;195745;195746;195747;195748;195749;195750;195751;195752;195753;195754 120904;120905 120904 0 ITNHLVAMIEK Unmodified 1267.6958 0.69584284 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 1 25.969 24.823 2;3 2.2218E-10 10969 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 191.53 178.74 893700000 160330000 140890000 140410000 2217800 0 2091700 29982000 32314000 27299000 0 741150 756380 44225000 47329000 37500000 0 0 0 81226000 77049000 67950000 0 1395100 0 10488 34 10212 195755;195756;195757;195758;195759;195760;195761;195762;195763;195764;195765;195766;195767;195768;195769;195770;195771;195772;195773;195774;195775;195776;195777;195778;195779;195780;195781;195782;195783 120906;120907;120908;120909;120910;120911;120912;120913;120914;120915;120916;120917;120918;120919;120920;120921;120922;120923;120924;120925;120926 120919 21 ITNIAQLK Unmodified 899.54402 0.54401687 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 1 21.011 21.171 2 0.00025971 8698 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 149.4 114.58 4156800000 325160000 298160000 301420000 2312000 2087200 2647700 434700000 416710000 394470000 5009900 7389500 7129400 256750000 200210000 198190000 3738100 2767500 2406100 420240000 443550000 397170000 19188000 15423000 0 10489 954 10213 195784;195785;195786;195787;195788;195789;195790;195791;195792;195793;195794;195795;195796;195797;195798;195799;195800;195801;195802;195803;195804;195805;195806;195807;195808;195809 120927;120928;120929;120930;120931;120932;120933;120934;120935;120936;120937;120938;120939;120940 120927 10 ITNIAQLKDPK Unmodified 1239.7187 0.71868677 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 1 2 1 2 2 2 1 2 2 2 1 1 2 17.396 17.928 2;3 1.1335E-10 6066 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 199.68 177.44 4718100000 324410000 356560000 434830000 3525400 1998900 651630 488260000 486530000 451880000 1442400 1438100 1204300 245720000 260670000 258300000 0 563240 0 505570000 482780000 407460000 876390 2037800 1456300 10490 954 10214 195810;195811;195812;195813;195814;195815;195816;195817;195818;195819;195820;195821;195822;195823;195824;195825;195826;195827;195828;195829;195830;195831;195832;195833;195834;195835;195836;195837;195838;195839;195840;195841;195842;195843;195844;195845;195846 120941;120942;120943;120944;120945;120946;120947;120948;120949;120950;120951;120952;120953;120954;120955;120956;120957;120958;120959;120960;120961;120962 120961 22 ITNICYK Unmodified 910.45824 0.45823833 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.215 16.019 2 0.0016502 5579 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.24 93.773 884380000 164200000 152630000 140630000 403920 197990 360000 43724000 44918000 48976000 0 0 1561700 36752000 36874000 37026000 0 0 0 55131000 63861000 57130000 0 0 0 10491 1455 10215 195847;195848;195849;195850;195851;195852;195853;195854;195855;195856;195857;195858;195859;195860;195861;195862 120963;120964;120965;120966;120967;120968;120969;120970;120971;120972;120973;120974 120963 12 ITNLGDLK Unmodified 872.49673 0.49673232 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.528 21.684 2 0.00045901 8792 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 137.88 79.689 1461400000 144380000 132120000 126870000 682380 663180 1098200 103440000 106640000 108220000 0 0 0 131220000 112480000 102670000 0 0 0 128910000 134670000 127370000 0 0 0 10492 963 10216 195863;195864;195865;195866;195867;195868;195869;195870;195871;195872;195873;195874;195875;195876;195877 120975;120976;120977;120978;120979;120980;120981;120982;120983;120984;120985;120986 120979 12 ITNPVSLDYPQAK Unmodified 1444.7562 0.75619449 914 P0AF56 yjcO Uncharacterized protein YjcO yes yes 0 0 0 By MS/MS By matching 1 1 31.373 30.275 2 0.00043498 13962 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.283 93.502 142720000 0 140170000 0 0 0 0 0 0 0 0 0 0 0 0 2547600 0 0 0 0 0 0 0 0 0 10493 914 10217 195878;195879 120987 120987 1 ITNTEGGSFNSHYGVK Unmodified 1709.8009 0.80091285 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 2 1 1 2 2 2 2 2 2 15.711 16.519 2;3 3.1842E-18 5332 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 182.08 177.54 1115600000 80901000 109160000 79245000 1410600 1661600 1222400 129060000 103620000 95443000 0 4123200 0 88876000 66627000 60286000 0 0 0 103170000 105290000 85484000 0 0 0 10494 948 10218 195880;195881;195882;195883;195884;195885;195886;195887;195888;195889;195890;195891;195892;195893;195894;195895;195896;195897;195898;195899;195900;195901;195902;195903;195904 120988;120989;120990;120991;120992;120993;120994;120995;120996;120997;120998;120999;121000;121001;121002;121003;121004;121005;121006;121007;121008;121009 121009 22 ITPADLEQNQQAR Unmodified 1482.7427 0.74266969 1568 P45464 lpoA Penicillin-binding protein activator LpoA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.116 21.874 2 7.6184E-06 9080 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 123.75 118.27 2945400000 2226000 2850000 0 701990 713590 798440 2622400 2688400 3139700 1825100000 2672700 3008700 0 1999400 0 664180000 228800000 196330000 0 4432600 0 1512900 1697900 0 10495 1568 10219 195905;195906;195907;195908;195909;195910;195911;195912;195913;195914;195915;195916;195917;195918;195919;195920;195921;195922 121010;121011 121011 2 ITPAHDFNDYEVGK Unmodified 1604.7471 0.74708636 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.293 21.928 2;3 6.7975E-09 9192 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 155.8 150.86 2063600000 156540000 172860000 158950000 0 0 0 174320000 185570000 163440000 0 0 0 142380000 135110000 127300000 0 0 0 201310000 254170000 191670000 0 0 0 10496 158 10220 195923;195924;195925;195926;195927;195928;195929;195930;195931;195932;195933;195934;195935;195936;195937;195938;195939;195940;195941;195942;195943;195944;195945;195946 121012;121013;121014;121015;121016;121017;121018;121019;121020;121021;121022;121023;121024;121025;121026;121027;121028;121029;121030;121031;121032;121033;121034;121035 121023 24 ITPAHDFNDYEVGKR Unmodified 1760.8482 0.84819739 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 3 3 3 3 3 3 18.052 18.663 2;3;4 1.9281E-09 6916 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.9 123.85 2364900000 221650000 219530000 184060000 3456200 2736700 2937300 257740000 219050000 187340000 0 0 0 123160000 131590000 124370000 0 0 0 226670000 222000000 238640000 0 0 0 10497 158 10221 195947;195948;195949;195950;195951;195952;195953;195954;195955;195956;195957;195958;195959;195960;195961;195962;195963;195964;195965;195966;195967;195968;195969;195970;195971;195972;195973;195974;195975;195976;195977;195978;195979;195980;195981;195982;195983;195984;195985;195986;195987;195988 121036;121037;121038;121039;121040;121041;121042;121043;121044;121045;121046;121047;121048;121049;121050;121051;121052;121053;121054;121055;121056;121057;121058;121059;121060;121061;121062 121047 23 ITPKPTHMIGGYAHLAYGFNYYGTVGSNRDEFVVVR Unmodified 4028.9996 0.99957644 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 2 By matching By MS/MS By MS/MS 1 1 1 40.587 38.267 6 0.00081444 14942 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 57.981 56.426 25440000 0 0 0 0 0 0 0 0 0 3888600 0 0 0 0 0 0 0 0 0 0 0 8882700 0 12669000 10498 205 10222 195989;195990;195991 121063;121064 121063 2 ITPTFTEESDGVR Unmodified 1450.694 0.69398816 766 P0AD33 yfcZ UPF0381 protein YfcZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 2 1 1 3 3 4 1 1 1 4 4 3 1 1 1 4 4 4 1 1 26.103 25.038 2;3 3.5317E-12 11583 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.64 157.76 15847000000 500460000 412890000 376930000 0 848470 1094400 2431200000 2494900000 2453600000 14958000 14099000 11493000 1469200000 1373800000 1370200000 1659100 1695200 1274500 960400000 966170000 982750000 0 4185100 3686400 10499 766 10223 195992;195993;195994;195995;195996;195997;195998;195999;196000;196001;196002;196003;196004;196005;196006;196007;196008;196009;196010;196011;196012;196013;196014;196015;196016;196017;196018;196019;196020;196021;196022;196023;196024;196025;196026;196027;196028;196029;196030;196031;196032;196033;196034;196035;196036;196037;196038;196039;196040;196041;196042;196043;196044 121065;121066;121067;121068;121069;121070;121071;121072;121073;121074;121075;121076;121077;121078;121079;121080;121081;121082;121083;121084;121085;121086;121087;121088;121089;121090;121091 121075 25 ITPVFVR Unmodified 830.50142 0.50142377 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 26.363 25.102 1 0.029197 11298 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 103.28 93.146 31050000 5171200 5970600 4858600 0 0 0 4470200 5651100 4928700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10500 1174 10224 196045;196046;196047;196048;196049;196050 121092 121092 0 ITPVVFIMK Unmodified 1046.6198 0.61982435 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 5 6 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 3 2 4 44.212 42.616 1;2 0.0019268 15404 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 86.953 86.953 19472000000 309760000 280120000 262730000 3084500000 2987900000 3058100000 291520000 299590000 286640000 298210000 224220000 145040000 152090000 145840000 154190000 147130000 91171000 85261000 299380000 311460000 304980000 1776700000 2262300000 2212900000 10501 133 10225 196051;196052;196053;196054;196055;196056;196057;196058;196059;196060;196061;196062;196063;196064;196065;196066;196067;196068;196069;196070;196071;196072;196073;196074;196075;196076;196077;196078;196079;196080;196081;196082;196083;196084;196085;196086;196087;196088;196089;196090;196091;196092;196093;196094;196095;196096;196097;196098;196099;196100;196101;196102;196103;196104;196105;196106 121093;121094;121095;121096;121097;121098;121099;121100;121101;121102;121103;121104;121105;121106;121107;121108;121109;121110;121111;121112;121113;121114;121115;121116;121117;121118;121119;121120;121121;121122;121123;121124;121125;121126;121127;121128;121129;121130;121131;121132;121133;121134;121135;121136;121137;121138;121139;121140;121141;121142;121143;121144;121145;121146;121147;121148;121149 121093 50 ITPVVFIMK Oxidation (M) 1062.6147 0.61473897 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 6 6 6 1 1 1 1 1 2 2 39.273 37.47 2 0.0024545 13088 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 86.953 86.953 544710000 0 0 2665300 129620000 132620000 119780000 0 0 0 4596900 4358500 4006900 0 0 0 0 0 0 0 0 2510400 42013000 55645000 46898000 10502 133 10225 196107;196108;196109;196110;196111;196112;196113;196114;196115;196116;196117;196118;196119;196120;196121;196122;196123;196124;196125;196126;196127;196128;196129;196130;196131;196132;196133;196134 121150;121151;121152;121153;121154;121155;121156;121157;121158;121159;121160;121161;121162;121163;121164;121165;121166;121167;121168;121169;121170;121171;121172;121173;121174;121175;121176;121177;121178;121179;121180;121181;121182;121183;121184;121185;121186;121187 121153 43 37 ITQESLYLALR Unmodified 1305.7293 0.72925145 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.075 38.316 2 1.5524E-05 18996 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.2 129.35 407900000 39426000 34123000 31871000 1119900 805450 902920 42521000 37095000 39336000 1732600 0 0 23045000 21174000 16153000 0 0 0 40646000 39424000 38529000 0 0 0 10503 829 10226 196135;196136;196137;196138;196139;196140;196141;196142;196143;196144;196145;196146;196147;196148;196149;196150 121188;121189;121190;121191;121192;121193;121194;121195;121196;121197;121198;121199;121200 121189 12 ITQGDDLAPGVLK Unmodified 1325.7191 0.7190807 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 2 1 2 2 2 3 2 2 3 2 2 5 1 2 1 2 2 2 29.42 28.128 2;3 9.6944E-07 10448 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 135.86 124.27 41051000000 402830000 364000000 323330000 23854000 19286000 22444000 305440000 294120000 284030000 2437400000 2387000000 2379800000 294000000 284770000 266440000 7835900000 5225300000 6999000000 342670000 368650000 339200000 3279200000 3312100000 3259900000 10504 463 10227 196151;196152;196153;196154;196155;196156;196157;196158;196159;196160;196161;196162;196163;196164;196165;196166;196167;196168;196169;196170;196171;196172;196173;196174;196175;196176;196177;196178;196179;196180;196181;196182;196183;196184;196185;196186;196187;196188;196189;196190;196191;196192;196193;196194;196195;196196;196197 121201;121202;121203;121204;121205;121206;121207;121208;121209;121210;121211;121212;121213;121214;121215;121216;121217;121218;121219;121220;121221;121222;121223;121224;121225;121226;121227;121228;121229;121230;121231;121232;121233;121234 121213 34 ITQIWPQMALQQGK Unmodified 1640.8708 0.87084709 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.725 40.858 2 8.1097E-11 19870 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 163.38 161.4 169470000 22085000 23199000 24664000 1748200 2063800 2607300 15240000 14785000 16037000 5693900 4822000 3824900 4644100 5939600 6127200 0 0 0 9046400 6938800 0 0 0 0 10505 1377 10228 196198;196199;196200;196201;196202;196203;196204;196205;196206;196207;196208;196209;196210;196211;196212;196213;196214 121235;121236;121237;121238;121239 121238 5 ITSFSHPEIGTVVVSES Unmodified 1787.8941 0.89414453 967 P0AFW8 rof Protein rof yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 38.366 36.574 2;3 3.9588E-14 17997 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 201.48 201.48 882150000 88841000 96083000 88847000 1283000 1315600 1304500 88500000 85380000 96560000 3644100 2988000 3301900 62638000 59162000 51089000 0 0 0 52039000 51564000 44351000 1105700 1227500 925240 10506 967 10229 196215;196216;196217;196218;196219;196220;196221;196222;196223;196224;196225;196226;196227;196228;196229;196230;196231;196232;196233;196234;196235;196236;196237;196238;196239;196240;196241;196242;196243;196244;196245;196246;196247 121240;121241;121242;121243;121244;121245;121246;121247;121248;121249;121250;121251;121252;121253;121254 121243 15 ITSVDTPLGGDSEK Unmodified 1417.6937 0.69365381 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 23.387 22.749 2 1.7575E-14 7288 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 190.15 183.56 4539800000 22548000 21394000 20269000 0 0 1653600 98558000 93599000 95351000 39798000 22115000 30058000 65328000 65511000 62807000 1697400000 1040900000 1065900000 37469000 0 38505000 5766900 6423300 8386000 10507 1089 10230 196248;196249;196250;196251;196252;196253;196254;196255;196256;196257;196258;196259;196260;196261;196262;196263;196264;196265;196266;196267;196268;196269;196270;196271 121255;121256;121257;121258;121259;121260;121261;121262;121263;121264;121265;121266;121267;121268;121269 121255 15 ITSVNVGGMAFR Unmodified 1250.6441 0.64414162 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 1 2 1 1 1 33.73 32.347 2;3 6.9198E-12 10668 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 237.08 225.03 3999300000 78380000 95132000 69709000 12549000 11932000 13710000 532260000 479300000 454780000 114940000 104330000 89231000 229900000 232740000 226680000 213110000 126460000 147720000 232650000 223670000 218930000 31537000 26580000 33039000 10508 1745 10231 196272;196273;196274;196275;196276;196277;196278;196279;196280;196281;196282;196283;196284;196285;196286;196287;196288;196289;196290;196291;196292;196293;196294;196295;196296;196297;196298;196299;196300;196301;196302;196303;196304;196305;196306;196307;196308 121270;121271;121272;121273;121274;121275;121276;121277;121278;121279;121280;121281;121282;121283;121284;121285;121286;121287;121288 121272 19 ITSVNVGGMAFR Oxidation (M) 1266.6391 0.63905624 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 2 2 2 2 2 2 2 2 1 1 1 1 1 26.415 25.085 2 0.0017023 9345 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.879 60.653 79834000 0 0 0 0 1005200 0 9947800 15486000 11004000 8194500 4475800 6634800 4928500 4955000 3461400 2176000 0 0 3009400 1720400 2834900 0 0 0 10509 1745 10231 196309;196310;196311;196312;196313;196314;196315;196316;196317;196318;196319;196320;196321;196322;196323;196324;196325;196326;196327;196328;196329;196330 121289;121290;121291;121292;121293;121294 121289 602 3 ITTLPPAK Unmodified 839.51165 0.5116541 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 15.071 16.011 2 0.1539 5256 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 48.346 34.838 42717000 0 0 0 0 0 0 0 0 0 0 0 0 17676000 0 14690000 0 0 0 0 0 10352000 0 0 0 10510 25 10232 196331;196332;196333 121295 121295 0 ITTLPPAKR Unmodified 995.61277 0.61276513 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 12.678 12.882 2 0.0010383 3101 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 100.19 92.517 18012000 0 0 0 0 0 0 0 0 0 4633100 4475300 4790500 0 0 0 1121000 0 0 0 0 0 1174400 0 1817500 10511 25 10233 196334;196335;196336;196337;196338;196339 121296;121297;121298 121296 3 ITTNNGWNR Unmodified 1074.5207 0.52065566 1329 P29131 ftsN Cell division protein FtsN yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 13.274 13.873 2 0.16212 3087 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 37.021 2.2129 66531000 11303000 0 0 10010000 10320000 10794000 0 0 0 1143800 0 0 0 0 0 0 0 0 0 0 0 7688200 7730700 7542500 10512 1329 10234 196340;196341;196342;196343;196344;196345;196346;196347 121299 121299 1 ITTQTAK Unmodified 761.42832 0.42831841 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.448 8.0627 2 0.0017267 1915 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 124.89 65.246 8819000000 73416000 77731000 79551000 16401000 18026000 15119000 58269000 61936000 54401000 385150000 333080000 289450000 51043000 42306000 46928000 1123500000 1513800000 1555800000 43895000 43714000 36515000 1051500000 799760000 1047700000 10513 935 10235 196348;196349;196350;196351;196352;196353;196354;196355;196356;196357;196358;196359;196360;196361;196362;196363;196364;196365;196366;196367;196368;196369;196370;196371 121300;121301;121302;121303;121304;121305;121306;121307;121308;121309;121310;121311;121312;121313;121314;121315;121316;121317;121318;121319;121320 121303 21 ITTVQAAIDYINGHQA Unmodified 1713.8686 0.86859848 226 P0A6A8 acpP Acyl carrier protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 1 2 2 3 1 1 1 2 2 2 2 2 2 2 2 2 2 1 2 47.899 46.696 2;3 1.2584E-30 22737 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 232.19 228.98 14709000000 1715500000 1589200000 1541600000 5525900 4557600 6720900 1551100000 1555200000 1463000000 11640000 12430000 0 1094000000 467600000 1222800000 13936000 13616000 11606000 1441100000 488750000 465310000 18907000 9109600 5280800 10514 226 10236 196372;196373;196374;196375;196376;196377;196378;196379;196380;196381;196382;196383;196384;196385;196386;196387;196388;196389;196390;196391;196392;196393;196394;196395;196396;196397;196398;196399;196400;196401;196402;196403;196404;196405;196406;196407;196408;196409;196410;196411;196412;196413;196414;196415 121321;121322;121323;121324;121325;121326;121327;121328;121329;121330;121331;121332;121333;121334;121335;121336;121337;121338;121339;121340;121341;121342;121343;121344;121345;121346;121347;121348;121349;121350;121351;121352;121353;121354;121355;121356;121357;121358;121359;121360;121361;121362;121363;121364 121338 44 ITVEFLR Unmodified 876.5069 0.50690308 1842 P76250 dmlR HTH-type transcriptional regulator DmlR yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 35.704 33.736 2 0.024068 13283 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 73.039 62.732 10911000 0 0 0 0 0 0 0 0 0 2733700 2003400 1712100 0 0 0 2485800 0 0 0 0 0 890560 0 1085900 10515 1842 10237 196416;196417;196418;196419;196420;196421 121365 121365 1 ITVFAAASLTNAMQDIATQFK Unmodified 2240.1511 0.15110427 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching 1 1 55.339 53.935 3 3.5666E-07 26543 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.84 96.65 57248000 0 0 52223000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5025400 0 0 10516 1464 10238 196422;196423 121366 121366 1 ITVLDNDGNR Unmodified 1115.5571 0.55710075 1871 P76550 yffS Uncharacterized protein YffS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.481 19.098 2 8.2836E-09 6840 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 186.3 162.15 177170000 22881000 19923000 17464000 495490 366170 0 12271000 13364000 14267000 0 0 0 12794000 11935000 11142000 0 0 0 13343000 13935000 12993000 0 0 0 10517 1871 10239 196424;196425;196426;196427;196428;196429;196430;196431;196432;196433;196434;196435;196436;196437 121367;121368;121369;121370;121371;121372;121373;121374;121375 121374 9 ITVLGCGALGQLWLTALCK Unmodified 2073.1115 0.11148806 527 P0A9J4 panE 2-dehydropantoate 2-reductase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 55.388 53.901 2 0.095229 26869 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 40.941 35.943 15431000 5369300 0 5046000 0 0 0 0 5015200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10518 527 10240 196438;196439;196440 121376 121376 0 ITVLHTNDHHGHFWR Unmodified 1868.9183 0.91828306 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 1 1 1 2 2 1 2 2 15.254 16.075 3;4 2.0553E-06 5533 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.03 98.255 158540000 29430000 17517000 16565000 0 0 0 15300000 14310000 11911000 0 0 0 4421500 7636900 7806100 0 0 0 10442000 12295000 10901000 0 0 0 10519 154 10241 196441;196442;196443;196444;196445;196446;196447;196448;196449;196450;196451;196452;196453;196454;196455;196456;196457;196458;196459 121377;121378;121379 121378 3 ITVLVGHDSNIASLLTALDFKPYQLHDQNER Unmodified 3506.8158 0.81578164 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 52.16 50.912 4;5 1.6606E-18 24862 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.15 153.44 1849100000 497540000 443690000 468580000 0 0 0 80603000 84815000 85611000 0 0 0 25627000 23886000 28283000 0 0 0 41128000 34592000 34790000 0 0 0 10520 1160 10242 196460;196461;196462;196463;196464;196465;196466;196467;196468;196469;196470;196471;196472;196473;196474;196475;196476;196477;196478;196479;196480;196481;196482;196483 121380;121381;121382;121383;121384;121385;121386;121387;121388;121389;121390 121387 10 ITVPVDATEEQVR Unmodified 1455.7569 0.75692277 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 1 28.701 27.443 2;3 8.361E-13 12573 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 198.25 187.49 5052600000 471060000 450640000 369940000 0 0 0 388570000 390160000 385500000 0 1974200 2146200 342650000 380520000 376370000 1403800 705540 0 470930000 518740000 494770000 1956800 2185400 2428400 10521 170 10243 196484;196485;196486;196487;196488;196489;196490;196491;196492;196493;196494;196495;196496;196497;196498;196499;196500;196501;196502;196503;196504;196505;196506;196507;196508;196509;196510;196511;196512;196513;196514 121391;121392;121393;121394;121395;121396;121397;121398;121399;121400;121401;121402;121403;121404;121405;121406;121407;121408;121409;121410;121411;121412 121399 20 ITVSIPLK Unmodified 869.5586 0.5586043 461 P0A8U6 metJ Met repressor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.476 32.009 2 0.0037473 15656 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.55 66.53 461110000 46905000 41120000 49519000 0 523960 610300 56941000 56484000 47868000 0 0 0 22352000 22250000 24794000 0 0 0 28822000 29130000 33790000 0 0 0 10522 461 10244 196515;196516;196517;196518;196519;196520;196521;196522;196523;196524;196525;196526;196527;196528 121413;121414;121415;121416;121417;121418;121419;121420;121421;121422;121423;121424 121413 12 ITVVPILR Unmodified 909.60114 0.60113781 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 2 2 2 2 37.771 36.019 2 9.5323E-05 16757 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 162.07 162.07 7055800000 763550000 755300000 616660000 9060000 8873500 10951000 323620000 323540000 335830000 20481000 21301000 19979000 566970000 499700000 480560000 4670200 3701000 4156100 790460000 776790000 696740000 7192000 8362400 7360800 10523 424 10245 196529;196530;196531;196532;196533;196534;196535;196536;196537;196538;196539;196540;196541;196542;196543;196544;196545;196546;196547;196548;196549;196550;196551;196552;196553;196554;196555;196556;196557;196558;196559 121425;121426;121427;121428;121429;121430;121431;121432;121433;121434;121435;121436;121437;121438;121439;121440;121441;121442;121443;121444;121445;121446;121447;121448;121449;121450;121451;121452;121453 121450 29 ITWEGSQNQDADVSSDGK Unmodified 1935.8446 0.84462816 398 P0A855 tolB Protein TolB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.271 22.444 2 5.1192E-45 9347 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 257.19 257.19 275770000 23964000 24557000 27391000 3259800 2850800 4309900 14127000 12570000 13319000 5684500 3164800 5322600 15282000 14990000 15620000 0 0 0 26851000 23463000 29333000 0 5202200 4506300 10524 398 10246 196560;196561;196562;196563;196564;196565;196566;196567;196568;196569;196570;196571;196572;196573;196574;196575;196576;196577;196578;196579 121454;121455;121456;121457;121458;121459;121460;121461;121462;121463;121464;121465;121466;121467;121468;121469 121467 16 ITWLYAAHNPQLK Unmodified 1553.8354 0.83544786 1614 P56262 ysgA Putative carboxymethylenebutenolidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 31.924 30.533 3 0.00025725 14254 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.043 73.871 411870000 96458000 114660000 90944000 0 0 0 25248000 28327000 25706000 0 0 0 0 8638800 0 0 0 0 0 21888000 0 0 0 0 10525 1614 10247 196580;196581;196582;196583;196584;196585;196586;196587;196588 121470;121471;121472;121473;121474;121475;121476;121477 121476 8 ITYLEQENYPPLR Unmodified 1634.8304 0.83042206 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 36.013 34.452 2 1.1013E-18 16843 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 180.09 167.28 158060000 28990000 28241000 27221000 0 0 0 17144000 17868000 0 0 0 0 0 16397000 0 0 0 0 0 22195000 0 0 0 0 10526 232 10248 196589;196590;196591;196592;196593;196594;196595;196596 121478;121479;121480;121481;121482;121483 121480 4 IVAAICAAPATVLVPHDIFPIGNMTGFPTLK Unmodified 3233.7345 0.73448353 1970 Q46948 yajL Probable protein deglycase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 54.942 53.47 3 0.17263 25497 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 9.6489 7.5706 558460000 0 0 158980000 0 0 0 84356000 73963000 73922000 0 0 0 60083000 56983000 50169000 0 0 0 0 0 0 0 0 0 10527 1970 10249 196597;196598;196599;196600;196601;196602;196603 121484 121484 1 IVADAMGALR Unmodified 1015.5485 0.54845032 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.293 26.919 2 2.0852E-09 12247 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 198.87 172.98 3041700000 183180000 195390000 164000000 0 1378400 1570100 251510000 248810000 251960000 2267200 2792900 1998500 278800000 266310000 286490000 0 0 0 305170000 307140000 290850000 2090200 0 0 10528 1189 10250 196604;196605;196606;196607;196608;196609;196610;196611;196612;196613;196614;196615;196616;196617;196618;196619;196620;196621 121485;121486;121487;121488;121489;121490;121491;121492 121488 8 IVAEAACAEGETIHNMPGGATPDQVYAALLVADQYGQR Unmodified 3985.8939 0.89385031 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 2 2 1 2 2 2 1 2 2 2 2 2 2 52.398 51.14 3;4 9.3018E-18 25389 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.48 123.9 585070000 23106000 28664000 15872000 0 0 0 92179000 90762000 89905000 0 0 3245800 55772000 50233000 40358000 0 0 0 30779000 28869000 35324000 0 0 0 10529 554 10251 196622;196623;196624;196625;196626;196627;196628;196629;196630;196631;196632;196633;196634;196635;196636;196637;196638;196639;196640;196641;196642;196643;196644;196645 121493;121494;121495;121496;121497 121494 5 IVAGAPAR Unmodified 753.44972 0.44972255 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.93 12.57 2 0.00090814 3252 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 118.06 109.37 1172200000 54826000 53517000 48484000 783560 520500 906300 170860000 196170000 165140000 2200600 0 1973700 110270000 99350000 91793000 1153800 1667500 2371500 55186000 54002000 57787000 1564500 1647000 0 10530 554 10252 196646;196647;196648;196649;196650;196651;196652;196653;196654;196655;196656;196657;196658;196659;196660;196661;196662;196663;196664;196665;196666;196667 121498;121499;121500;121501;121502;121503;121504;121505;121506;121507;121508;121509 121507 11 IVAGCPVPIVIAGGK Unmodified 1449.8378 0.83775605 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 1 1 1 1 1 1 1 1 1 38.882 37.243 2 0.00014046 18027 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83 80.774 709370000 232510000 200120000 207470000 0 0 0 12449000 11100000 12721000 0 0 0 6150600 3881200 5848800 0 0 0 5834200 4504200 6780400 0 0 0 10531 1822 10253 196668;196669;196670;196671;196672;196673;196674;196675;196676;196677;196678;196679;196680;196681 121510;121511;121512 121511 3 IVAHGSAQALQANPDPR Unmodified 1743.9016 0.90162994 1663 P63386 mlaF Probable phospholipid import ATP-binding protein MlaF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 14.915 15.514 2;3 7.6504E-09 5276 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.56 111.36 268690000 4342100 0 0 2009400 2262600 2273000 21974000 25793000 22308000 7792700 7107100 7146700 18219000 19492000 20039000 3929400 2781900 2324500 26683000 30650000 27489000 4112500 4414700 5547000 10532 1663 10254 196682;196683;196684;196685;196686;196687;196688;196689;196690;196691;196692;196693;196694;196695;196696;196697;196698;196699;196700;196701;196702;196703;196704;196705;196706;196707;196708;196709;196710;196711;196712 121513;121514;121515;121516 121514 4 IVAQAQAEIEAER Unmodified 1426.7416 0.74160705 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 3 3 5 6 3 3 1 4 2 3 4 4 6 3 2 24.519 23.484 2 4.7931E-19 7693 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 188.28 182.5 581580000 3176000 8202500 5506500 6913100 10550000 9956900 32808000 58658000 65520000 9998800 30204000 32570000 21575000 34596000 39311000 0 0 0 41523000 45088000 38422000 35367000 32019000 19617000 10533 642 10255 196713;196714;196715;196716;196717;196718;196719;196720;196721;196722;196723;196724;196725;196726;196727;196728;196729;196730;196731;196732;196733;196734;196735;196736;196737;196738;196739;196740;196741;196742;196743;196744;196745;196746;196747;196748;196749;196750;196751;196752;196753;196754;196755;196756;196757;196758;196759;196760;196761;196762;196763;196764;196765;196766;196767;196768;196769;196770;196771;196772;196773 121517;121518;121519;121520;121521;121522;121523;121524;121525;121526;121527;121528;121529;121530;121531;121532;121533;121534;121535;121536;121537;121538;121539;121540;121541;121542;121543;121544;121545;121546;121547;121548;121549;121550;121551;121552;121553;121554;121555;121556;121557;121558;121559 121518 23 IVASLISPTSGTLLFEGEDVSTLKPEIYR Unmodified 3134.6751 0.6750972 1891 P77279 fetA Probable iron export ATP-binding protein FetA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.464 52.031 3 1.9842E-23 25915 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 175.9 175.36 145490000 6007300 7457600 6759000 3573200 1823000 1990900 20581000 15375000 18418000 3520900 0 0 8344900 9341100 9270500 0 0 0 13413000 11317000 8301900 0 0 0 10534 1891 10256 196774;196775;196776;196777;196778;196779;196780;196781;196782;196783;196784;196785;196786;196787;196788;196789 121560;121561;121562;121563 121560 4 IVATSVLGEVLHCK Unmodified 1524.8334 0.83339895 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 2 2 2 2 1 1 1 1 1 2 1 1 2 2 1 39.887 38.121 2;3 3.6745E-06 15168 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 109.22 107.9 430100000 6350200 12479000 6861000 1382100 1719400 2244800 44961000 25383000 32656000 32779000 22150000 24609000 17505000 16210000 20389000 7601800 6835100 7408100 40325000 36437000 30127000 9582700 13750000 10359000 10535 143 10257 196790;196791;196792;196793;196794;196795;196796;196797;196798;196799;196800;196801;196802;196803;196804;196805;196806;196807;196808;196809;196810;196811;196812;196813;196814;196815;196816;196817;196818;196819;196820;196821;196822 121564;121565;121566;121567;121568;121569;121570;121571;121572;121573;121574;121575;121576;121577;121578;121579;121580;121581;121582 121567 18 IVCTIGPK Unmodified 886.49462 0.49462383 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.73 16.428 2 0.0016084 5233 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 107.43 92.894 7995400000 534380000 535030000 492250000 2070000 1744100 1996500 879240000 945140000 916220000 3316100 2313400 2348900 599550000 571740000 516290000 0 0 0 663450000 714250000 614100000 0 0 0 10536 771 10258 196823;196824;196825;196826;196827;196828;196829;196830;196831;196832;196833;196834;196835;196836;196837;196838;196839;196840;196841 121583;121584;121585;121586;121587;121588;121589;121590;121591;121592;121593;121594 121594 12 IVDAAGR Unmodified 700.38679 0.38678794 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 3 2 1 1 2 1 2 3 4 1 1 3 2 1 1 2 3 2 10.965 11.751 2 0.0054511 2873 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 94.163 79.381 3566800000 574890000 175430000 159300000 2398000 4633800 1479900 395520000 415530000 285200000 0 7439400 5397400 245710000 235690000 145090000 0 3610100 0 257020000 411000000 241440000 0 0 0 10537 1360 10259 196842;196843;196844;196845;196846;196847;196848;196849;196850;196851;196852;196853;196854;196855;196856;196857;196858;196859;196860;196861;196862;196863;196864;196865;196866;196867;196868;196869;196870;196871;196872;196873;196874;196875;196876 121595;121596;121597;121598;121599;121600;121601;121602;121603;121604;121605;121606;121607 121600 13 IVDAQGNDVLIPGTDMPAQYFLPGK Oxidation (M) 2674.3313 0.33125348 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 4 4 4 4 4 3 2 1 4 5 4 51.773 50.688 2;3 1.4138E-21 18918 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 161.08 154.78 2769400000 0 1930100 0 0 1836700 1753000 4550200 0 4596300 166740000 222840000 251660000 0 0 0 469110000 368770000 332340000 0 6500200 3825500 296350000 319030000 317620000 10538 458 10260 196877;196878;196879;196880;196881;196882;196883;196884;196885;196886;196887;196888;196889;196890;196891;196892;196893;196894;196895;196896;196897;196898;196899;196900;196901;196902;196903;196904;196905;196906;196907;196908;196909;196910;196911;196912;196913;196914;196915;196916;196917;196918;196919;196920;196921 121608;121609;121610;121611;121612;121613;121614;121615;121616;121617;121618;121619;121620;121621;121622;121623;121624;121625;121626;121627;121628;121629;121630;121631;121632;121633;121634;121635;121636;121637;121638;121639;121640;121641;121642 121617 235 35 IVDAQGNDVLIPGTDMPAQYFLPGK Unmodified 2658.3363 0.33633886 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 2 2 3 4 3 2 2 2 2 2 4 6 6 2 3 3 5 4 5 53.885 52.779 2;3;4 1.2907E-15 21281 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 213.94 213.12 27032000000 154530000 136280000 141890000 7016600 6619500 10754000 109620000 94850000 97489000 1418600000 320930000 891900000 136930000 152090000 154670000 5663400000 6237000000 6198700000 195350000 219810000 195160000 1664400000 1526500000 1297800000 10539 458 10260 196922;196923;196924;196925;196926;196927;196928;196929;196930;196931;196932;196933;196934;196935;196936;196937;196938;196939;196940;196941;196942;196943;196944;196945;196946;196947;196948;196949;196950;196951;196952;196953;196954;196955;196956;196957;196958;196959;196960;196961;196962;196963;196964;196965;196966;196967;196968;196969;196970;196971;196972;196973;196974;196975;196976;196977;196978;196979;196980;196981;196982;196983;196984;196985;196986;196987;196988;196989;196990;196991;196992 121643;121644;121645;121646;121647;121648;121649;121650;121651;121652;121653;121654;121655;121656;121657;121658;121659;121660;121661;121662;121663;121664;121665;121666;121667;121668;121669;121670;121671;121672;121673;121674;121675;121676;121677;121678;121679;121680;121681;121682;121683;121684;121685;121686;121687 121655 43 IVDEATNPWGIK Unmodified 1341.6929 0.69286595 576 P0AA53 qmcA Protein QmcA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 35.25 33.083 2 7.4947E-07 13217 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 152.97 144.75 37066000 0 0 0 0 1730100 0 0 0 0 10333000 10692000 9810900 0 0 0 0 0 0 0 0 0 0 2075400 2425100 10540 576 10261 196993;196994;196995;196996;196997;196998 121688;121689;121690 121688 3 IVDEIGLPR Unmodified 1010.576 0.57604528 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.067 29.64 2 1.5629E-05 14128 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159.04 143.38 7044500000 1728700000 1419600000 1341100000 3790200 3158000 2903300 257230000 241990000 236210000 0 1108200 1831500 180340000 175980000 175780000 1290100 0 0 429640000 425200000 414080000 1367900 1742000 1406700 10541 1264 10262 196999;197000;197001;197002;197003;197004;197005;197006;197007;197008;197009;197010;197011;197012;197013;197014;197015;197016;197017;197018;197019;197020;197021;197022 121691;121692;121693;121694;121695;121696;121697;121698;121699;121700;121701;121702;121703;121704 121693 14 IVDEQPGAECQLIGTATGK Unmodified 1985.9728 0.97280556 918 P0AF70 yjeI Uncharacterized protein YjeI yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.193 30.645 2 2.7839E-10 14417 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 131.66 124.97 114810000 6117800 8318800 9063300 0 0 0 7238400 3897900 4595600 4539200 3845500 3412400 8892600 7185900 8142200 0 0 0 11661000 12980000 14922000 0 0 0 10542 918 10263 197023;197024;197025;197026;197027;197028;197029;197030;197031;197032;197033;197034;197035;197036;197037 121705;121706;121707;121708;121709;121710 121708 6 IVDFGAFVAIGGGK Unmodified 1349.7343 0.73433683 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 2 1 1 1 2 2 2 2 1 2 1 1 1 44.498 43.204 2;3 5.8725E-06 24646 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.91 128.3 935120000 6048200 37951000 32196000 10984000 12271000 10764000 93626000 90733000 85020000 4479000 5513400 0 78224000 74326000 75461000 0 0 0 113000000 102830000 92947000 3545700 2854700 2346600 10543 107 10264 197038;197039;197040;197041;197042;197043;197044;197045;197046;197047;197048;197049;197050;197051;197052;197053;197054;197055;197056;197057;197058;197059;197060;197061;197062;197063;197064;197065;197066 121711;121712;121713;121714;121715;121716;121717;121718;121719;121720;121721;121722;121723;121724;121725;121726 121712 15 IVDGLLR Unmodified 784.48069 0.48068833 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 26.17 25.32 2 0.050331 11328 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 62.978 8.2138 216960000 66787000 46950000 0 0 0 0 0 0 0 0 0 0 0 50492000 52729000 0 0 0 0 0 0 0 0 0 10544 1332 10265 197067;197068;197069;197070 121727;121728 121728 2 IVDLLRPQLQK Unmodified 1321.8082 0.80817048 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 2 2 2 2 2 2 29.748 28.399 2;3 2.0282E-05 13315 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.79 142.57 550990000 61712000 57211000 49645000 0 0 0 32495000 28699000 23134000 0 0 392900 33494000 33079000 36064000 0 0 0 70348000 62248000 62464000 0 0 0 10545 623 10266 197071;197072;197073;197074;197075;197076;197077;197078;197079;197080;197081;197082;197083;197084;197085;197086;197087;197088;197089;197090;197091;197092;197093;197094 121729;121730;121731;121732;121733;121734;121735;121736;121737;121738;121739;121740;121741;121742 121733 13 IVDLLTER Unmodified 957.5495 0.54949617 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.209 30.783 2 2.1755E-05 14813 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 176.66 130.24 10947000000 1046900000 893430000 815610000 2150400 0 5660200 1071500000 1003300000 974650000 5560600 0 3197900 760370000 667130000 637880000 0 219140 0 1129400000 982120000 944780000 2814000 0 0 10546 333 10267 197095;197096;197097;197098;197099;197100;197101;197102;197103;197104;197105;197106;197107;197108;197109;197110;197111;197112 121743;121744;121745;121746;121747;121748;121749;121750;121751;121752;121753;121754;121755;121756;121757;121758;121759;121760 121744 17 IVDSQAHLEPATR Unmodified 1435.7419 0.7419414 1454 P37005 lasT Uncharacterized tRNA/rRNA methyltransferase LasT yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 1 14.05 14.859 2;3 8.9328E-07 4745 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.59 118.46 305680000 22757000 25733000 19460000 0 0 0 30307000 32058000 28127000 0 695900 0 23381000 18736000 20944000 0 0 0 29752000 27483000 25668000 0 578820 0 10547 1454 10268 197113;197114;197115;197116;197117;197118;197119;197120;197121;197122;197123;197124;197125;197126;197127;197128;197129;197130;197131;197132;197133;197134;197135;197136;197137;197138 121761;121762;121763;121764;121765;121766;121767;121768;121769;121770 121766 10 IVDYSPQQEGK Unmodified 1262.6143 0.61428128 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.601 16.072 2 2.7726E-10 4343 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 188.66 181.01 375920000 7333700 5957100 4820600 478570 414160 0 3804600 0 0 41517000 38356000 37352000 4052500 2713100 3393800 64175000 52229000 56626000 0 0 0 19533000 16668000 16500000 10548 1338 10269 197139;197140;197141;197142;197143;197144;197145;197146;197147;197148;197149;197150;197151;197152;197153;197154;197155;197156 121771;121772;121773;121774;121775;121776;121777;121778;121779 121777 9 IVEALEQR Unmodified 956.5291 0.52909508 1460 P37182 hybD Hydrogenase 2 maturation protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.008 18.412 2 0.00062514 6463 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 130.04 92.945 371320000 0 0 0 0 0 0 50347000 48488000 44575000 2992000 1901700 0 34760000 36846000 30576000 0 743790 0 42977000 43288000 32772000 0 1052000 0 10549 1460 10270 197157;197158;197159;197160;197161;197162;197163;197164;197165;197166;197167;197168;197169 121780;121781;121782;121783;121784;121785;121786;121787;121788 121787 6 IVECWASDVPDGK Unmodified 1474.6762 0.67622961 607 P0AAQ6 ybaA Uncharacterized protein YbaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 31.099 29.778 2 1.7285E-05 14006 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.74 110.04 150150000 56354000 42361000 41929000 0 996020 908910 0 0 0 0 0 0 0 0 0 0 0 0 7596600 0 0 0 0 0 10550 607 10271 197170;197171;197172;197173;197174;197175 121789;121790;121791 121789 3 IVEEAMIAANICAAR Unmodified 1630.8171 0.81709696 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 39.341 37.768 2 1.1982E-09 18256 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 156.48 152.18 66790000 8509700 6909800 5204900 0 0 0 0 0 4859700 0 0 0 6610900 4783300 4912600 0 0 0 7580200 7968600 9450600 0 0 0 10551 1348 10272 197176;197177;197178;197179;197180;197181;197182;197183;197184;197185 121792;121793;121794;121795;121796 121792 3 IVEEELQR Unmodified 1014.5346 0.53457439 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 1 2 1 1 1 1 1 2 16.178 16.992 2 0.00091102 6014 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.93 104.96 702660000 122400000 122270000 117900000 922400 822710 1018500 64891000 55894000 48275000 0 0 0 22543000 20568000 21107000 0 0 0 50342000 26155000 27559000 0 0 0 10552 218 10273 197186;197187;197188;197189;197190;197191;197192;197193;197194;197195;197196;197197;197198;197199;197200;197201;197202;197203;197204 121797;121798;121799;121800;121801;121802;121803;121804 121800 8 IVEELLR Unmodified 870.51747 0.51746776 406 P0A881 trpR Trp operon repressor yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 28.042 27.024 2 0.0063618 12313 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 95.793 43.494 116820000 31433000 32528000 25229000 0 0 0 0 0 0 0 0 0 8555300 9931800 9140700 0 0 0 0 0 0 0 0 0 10553 406 10274 197205;197206;197207;197208;197209;197210 121805;121806;121807 121806 3 IVEENGEK Unmodified 916.45018 0.45017606 1623 P60560 guaC GMP reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.61 11.144 2 0.00017407 2432 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 154.35 132.22 641180000 60599000 69176000 60521000 0 0 0 7451100 18910000 10830000 6755800 4489000 0 49585000 60571000 49017000 9266300 9539500 9934900 74720000 63857000 60646000 2693300 5542200 7074100 10554 1623 10275 197211;197212;197213;197214;197215;197216;197217;197218;197219;197220;197221;197222;197223;197224;197225;197226;197227;197228;197229;197230 121808;121809;121810;121811;121812;121813;121814;121815 121813 8 IVEENTYGIVK Unmodified 1263.6711 0.67106787 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.91 23.805 2 5.1559E-05 10512 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.1 118.27 607680000 43627000 40002000 32367000 1106700 1188300 1081200 44856000 47595000 40402000 2147400 1561600 1962700 48226000 45513000 38201000 0 0 0 78391000 70036000 62348000 2616300 1916900 2534700 10555 1812 10276 197231;197232;197233;197234;197235;197236;197237;197238;197239;197240;197241;197242;197243;197244;197245;197246;197247;197248;197249;197250;197251 121816;121817;121818;121819;121820;121821;121822;121823;121824;121825;121826 121821 11 IVEFIEKPDQPQTLDSDIMAVGR Unmodified 2600.3156 0.31560342 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 3 3 3 1 1 1 44.953 43.357 2;3;4 6.7969E-53 21588 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 280.4 262.78 4531200000 281800000 286510000 284240000 6481100 7937200 6988500 403500000 338400000 306260000 7658600 8231900 7930400 436780000 378290000 402230000 0 0 0 445010000 475680000 419700000 10688000 7666100 9272500 10556 583 10277 197252;197253;197254;197255;197256;197257;197258;197259;197260;197261;197262;197263;197264;197265;197266;197267;197268;197269;197270;197271;197272;197273;197274;197275;197276;197277;197278;197279;197280;197281;197282;197283;197284;197285;197286;197287;197288;197289;197290;197291;197292;197293;197294;197295;197296 121827;121828;121829;121830;121831;121832;121833;121834;121835;121836;121837;121838;121839;121840;121841;121842;121843;121844;121845;121846;121847;121848;121849;121850;121851;121852;121853 121829 27 IVEFIEKPDQPQTLDSDIMAVGR Oxidation (M) 2616.3105 0.31051804 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 1 1 By matching By MS/MS By MS/MS 1 1 1 41.467 39.314 3 0.019422 19520 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 41.904 39.126 28748000 0 0 0 0 0 0 9758900 11063000 7926400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10557 583 10277 197297;197298;197299 121854;121855 121854 342 2 IVEIYGPESSGK Unmodified 1277.6503 0.65033243 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 24.685 23.72 2 2.2979E-06 10738 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 142.83 132.59 4920400000 284060000 283880000 266930000 46308000 43750000 48624000 296910000 300900000 279400000 364520000 335390000 332020000 199140000 185140000 178330000 38293000 35226000 36187000 336660000 334840000 316430000 121030000 129900000 126520000 10558 343 10278 197300;197301;197302;197303;197304;197305;197306;197307;197308;197309;197310;197311;197312;197313;197314;197315;197316;197317;197318;197319;197320;197321;197322;197323;197324 121856;121857;121858;121859;121860;121861;121862;121863;121864;121865;121866;121867;121868;121869;121870;121871;121872;121873;121874;121875;121876;121877;121878;121879;121880;121881 121864 26 IVELEAPQLPR Unmodified 1263.7187 0.71868677 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 37.257 35.566 2;3 1.6355E-05 12425 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 161.92 159.06 847300000 86584000 84466000 70165000 17573000 23402000 17611000 47108000 51368000 55941000 38976000 39881000 37364000 26337000 26719000 20615000 5263200 1719000 2215300 48492000 56221000 55912000 11351000 10108000 11912000 10559 1321 10279 197325;197326;197327;197328;197329;197330;197331;197332;197333;197334;197335;197336;197337;197338;197339;197340;197341;197342;197343;197344;197345;197346;197347;197348;197349;197350;197351;197352;197353;197354;197355;197356;197357;197358;197359;197360;197361;197362;197363;197364;197365;197366;197367;197368;197369;197370 121882;121883;121884;121885;121886;121887;121888;121889;121890;121891;121892;121893;121894;121895;121896;121897;121898;121899;121900;121901;121902;121903;121904 121898 22 IVFLESPGSITMEVHDVPAIVAAVR Unmodified 2649.42 0.42000891 130 P06721 metC Cystathionine beta-lyase MetC yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.124 52.684 3 4.731E-16 26092 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 154.6 148.1 396630000 54951000 47350000 40374000 0 0 0 42606000 29018000 31680000 0 0 0 26750000 20195000 22450000 0 0 0 28611000 24055000 28593000 0 0 0 10560 130 10280 197371;197372;197373;197374;197375;197376;197377;197378;197379;197380;197381;197382 121905;121906;121907;121908;121909;121910;121911;121912 121910 7 IVFLGAGSAGCGIAEMIISQTQR Unmodified 2378.2086 0.20863593 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 2 54.855 53.403 3 8.1979E-64 25490 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 199.81 195.86 1198400000 77668000 68955000 70332000 0 0 0 0 108330000 99558000 0 0 1290700 119010000 125160000 116380000 0 0 0 143510000 131490000 136720000 0 0 0 10561 1283 10281 197383;197384;197385;197386;197387;197388;197389;197390;197391;197392;197393;197394;197395;197396 121913;121914;121915;121916;121917;121918;121919;121920;121921;121922;121923 121921 11 IVFTATDADVIK Unmodified 1291.7024 0.702368 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.288 34.743 2 1.0243E-05 11816 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 129.85 121.92 507450000 34354000 34804000 30029000 3472300 3350300 3302000 16059000 13999000 13977000 7109700 8722900 7132300 9038700 11567000 12249000 120210000 64466000 66667000 12440000 12185000 12390000 3980800 3112600 2836300 10562 515 10282 197397;197398;197399;197400;197401;197402;197403;197404;197405;197406;197407;197408;197409;197410;197411;197412;197413;197414;197415;197416;197417;197418;197419;197420 121924;121925;121926;121927;121928;121929;121930;121931;121932;121933;121934;121935;121936;121937;121938;121939;121940;121941;121942;121943;121944;121945;121946;121947 121925 24 IVFVDVRPDTMNIDETLIEAAITDK Unmodified 2817.447 0.44701152 1310 P27833 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 54.77 53.284 3 2.2055E-05 26120 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.519 85.635 194890000 0 5557300 0 0 0 0 20276000 22397000 22814000 0 0 3969400 0 0 0 0 0 0 6258600 61146000 48364000 0 2530400 1573200 10563 1310 10283 197421;197422;197423;197424;197425;197426;197427;197428;197429;197430 121948;121949 121949 2 IVFVIPWMDEFSIIGTTDVEYKGDPK Unmodified 2998.5038 0.50379812 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.567 54.391 3 9.1339E-11 21780 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 127.83 126.21 979560000 0 0 0 0 1541300 4185600 20829000 14712000 0 255240000 234240000 244930000 0 5715300 3860400 22589000 21326000 26364000 7035900 0 0 36340000 34123000 46520000 10564 1088 10284 197431;197432;197433;197434;197435;197436;197437;197438;197439;197440;197441;197442;197443;197444;197445;197446 121950;121951;121952;121953;121954;121955;121956;121957;121958 121956 9 IVGDDEADFK Unmodified 1107.5084 0.50841922 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.847 21.083 2 0.00051539 8445 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 98.033 90.321 3251000000 157000000 138640000 132880000 0 0 0 303800000 304260000 279160000 0 767430 669810 330970000 262340000 275090000 1271900 0 0 347510000 375230000 341400000 0 0 0 10565 288 10285 197447;197448;197449;197450;197451;197452;197453;197454;197455;197456;197457;197458;197459;197460;197461 121959;121960;121961;121962;121963;121964;121965;121966;121967;121968;121969;121970 121962 12 IVGDDEADFKQNLISVNSPIAR Unmodified 2400.2285 0.22850297 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.268 38.698 3 4.1354E-15 18042 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139 132.9 296690000 13476000 14354000 0 2155900 2573500 2346600 17926000 23226000 18652000 3283400 3843400 2266100 19737000 18948000 19237000 9406700 8966300 7162000 34662000 35633000 34338000 0 0 4500200 10566 288 10286 197462;197463;197464;197465;197466;197467;197468;197469;197470;197471;197472;197473;197474;197475;197476;197477;197478;197479;197480;197481;197482 121971;121972;121973;121974;121975;121976;121977;121978 121978 8 IVGDGIAIK Unmodified 884.53312 0.53311783 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 1 1 1 1 1 1 23.636 22.822 2 0.0046486 9573 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 77.282 39.637 1028400000 88753000 80599000 72994000 1869300 0 0 88317000 141110000 123970000 0 0 0 67466000 78715000 68911000 0 0 0 65375000 67365000 82936000 0 0 0 10567 1741 10287 197483;197484;197485;197486;197487;197488;197489;197490;197491;197492;197493;197494;197495;197496;197497 121979;121980;121981;121982;121983;121984;121985;121986;121987;121988;121989 121987 11 IVGDGIAIKPTGNK Unmodified 1381.7929 0.79291434 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 2 2 3 4 4 4 2 3 2 4 4 4 2 3 2 4 4 4 2 2 2 19.32 19.688 2;3 2.8219E-19 7456 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 208.84 176.52 38401000000 2982100000 3091200000 2717400000 40064000 37699000 43852000 3824800000 4079100000 3428100000 32565000 25383000 26476000 3034200000 2788200000 2607800000 26809000 18109000 22161000 3327700000 3194000000 2995000000 15908000 21496000 20203000 10568 1741 10288 197498;197499;197500;197501;197502;197503;197504;197505;197506;197507;197508;197509;197510;197511;197512;197513;197514;197515;197516;197517;197518;197519;197520;197521;197522;197523;197524;197525;197526;197527;197528;197529;197530;197531;197532;197533;197534;197535;197536;197537;197538;197539;197540;197541;197542;197543;197544;197545;197546;197547;197548;197549;197550;197551;197552;197553;197554;197555;197556;197557;197558;197559;197560;197561;197562;197563;197564;197565;197566;197567;197568;197569;197570;197571;197572 121990;121991;121992;121993;121994;121995;121996;121997;121998;121999;122000;122001;122002;122003;122004;122005;122006;122007;122008;122009;122010;122011;122012;122013;122014;122015;122016;122017;122018;122019;122020;122021;122022;122023;122024;122025;122026;122027;122028;122029;122030;122031;122032;122033;122034;122035;122036;122037;122038;122039;122040;122041;122042;122043;122044;122045;122046;122047;122048;122049;122050;122051;122052;122053;122054;122055;122056 122016 67 IVGFLYLGTPQLK Unmodified 1447.8439 0.84388728 756 P0ACY1 ydjA Putative NAD(P)H nitroreductase YdjA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.709 50.461 2 2.5988E-12 23596 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 188.04 188.04 1102800000 106240000 114430000 94955000 0 0 0 139290000 119150000 110840000 0 0 0 62579000 57270000 65477000 0 0 0 78607000 77865000 76086000 0 0 0 10569 756 10289 197573;197574;197575;197576;197577;197578;197579;197580;197581;197582;197583;197584 122057;122058;122059;122060;122061;122062;122063;122064;122065;122066;122067;122068 122067 12 IVGIDAVVLSTQHSEEIDQK Unmodified 2180.1325 0.13247732 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 1 2 3 3 2 2 3 2 2 2 3 3 2 1 1 1 39.089 37.229 2;3 1.3039E-37 18403 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 280.5 276.56 6416600000 502450000 404070000 402990000 10388000 9743100 7137300 720840000 778040000 753970000 51897000 46384000 51558000 418540000 349180000 335220000 0 0 0 562070000 513910000 484130000 5743600 4594500 3697600 10570 388 10290 197585;197586;197587;197588;197589;197590;197591;197592;197593;197594;197595;197596;197597;197598;197599;197600;197601;197602;197603;197604;197605;197606;197607;197608;197609;197610;197611;197612;197613;197614;197615;197616;197617;197618;197619;197620;197621;197622;197623;197624;197625;197626;197627 122069;122070;122071;122072;122073;122074;122075;122076;122077;122078;122079;122080;122081;122082;122083;122084;122085;122086;122087;122088;122089;122090;122091;122092;122093;122094;122095;122096;122097;122098;122099;122100;122101;122102;122103;122104;122105;122106;122107;122108;122109;122110;122111;122112;122113;122114 122075 46 IVGIHTEGAYQAIYVDTPGLHMEEK Unmodified 2770.3636 0.36361624 125 P06616 era GTPase Era yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 1 1 1 38.637 36.793 3;4 8.9815E-06 17023 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 88.239 85.831 468110000 41677000 36120000 42131000 1063700 3927600 0 33128000 42367000 39633000 4866000 4012700 5821300 28252000 31616000 30100000 0 0 0 57626000 34921000 26619000 1956300 0 2267000 10571 125 10291 197628;197629;197630;197631;197632;197633;197634;197635;197636;197637;197638;197639;197640;197641;197642;197643;197644;197645;197646;197647;197648;197649;197650;197651;197652;197653;197654;197655;197656;197657 122115;122116;122117;122118;122119;122120;122121;122122;122123;122124;122125;122126;122127;122128;122129;122130 122130 16 IVGLEIGADDYIPK Unmodified 1501.8028 0.80281033 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 45.937 44.413 2 4.7904E-06 21672 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.69 7.0683 139170000 0 58737000 0 0 0 0 1805200 0 29384000 0 0 0 24295000 24948000 0 0 0 0 0 0 0 0 0 0 10572 570 10292 197658;197659;197660;197661;197662 122131;122132;122133;122134 122132 4 IVGLEIGADDYIPKPFNPR Unmodified 2113.1208 0.12079042 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 1 1 1 47.804 46.49 2;3 5.3931E-14 22570 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 185.57 180.07 2005400000 215280000 211490000 195120000 17120000 14483000 17691000 130910000 125560000 113390000 29332000 25402000 28244000 92430000 87835000 70511000 97039000 71580000 59855000 125860000 131700000 112220000 9763300 10392000 12195000 10573 570 10293 197663;197664;197665;197666;197667;197668;197669;197670;197671;197672;197673;197674;197675;197676;197677;197678;197679;197680;197681;197682;197683;197684;197685;197686;197687;197688;197689;197690;197691;197692;197693;197694;197695;197696;197697;197698;197699 122135;122136;122137;122138;122139;122140;122141;122142;122143;122144;122145;122146;122147;122148;122149;122150;122151;122152;122153;122154;122155;122156;122157;122158;122159;122160;122161;122162;122163;122164;122165;122166;122167;122168 122162 31 IVGLQTEAPLK Unmodified 1167.6863 0.68632401 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 29.323 28.044 2 1.9289E-05 13392 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 137.14 107.76 8879400000 362260000 321210000 305680000 1016400 1027100 1028300 1139500000 1143900000 1128400000 1781300 0 0 974800000 918910000 912320000 675180 0 0 526540000 566090000 574200000 0 0 0 10574 212 10294 197700;197701;197702;197703;197704;197705;197706;197707;197708;197709;197710;197711;197712;197713;197714;197715;197716;197717 122169;122170;122171;122172;122173;122174;122175;122176;122177;122178;122179;122180 122169 12 IVGLQTEAPLKR Unmodified 1323.7874 0.78743503 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 22.176 21.957 2;3 5.0833E-12 9144 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 222.42 196.86 40603000000 1973100000 1876100000 1657800000 44130000 41112000 35272000 5910000000 4437900000 4225400000 78793000 79285000 64990000 3789300000 3695500000 3387600000 7206500 2000900 1450200 3025900000 3142500000 2979000000 45123000 50561000 53259000 10575 212 10295 197718;197719;197720;197721;197722;197723;197724;197725;197726;197727;197728;197729;197730;197731;197732;197733;197734;197735;197736;197737;197738;197739;197740;197741;197742;197743;197744;197745;197746;197747;197748;197749;197750;197751;197752;197753;197754;197755;197756;197757;197758;197759;197760;197761 122181;122182;122183;122184;122185;122186;122187;122188;122189;122190;122191;122192;122193;122194;122195;122196;122197;122198;122199;122200;122201;122202;122203;122204;122205;122206;122207;122208;122209;122210;122211;122212;122213;122214;122215;122216 122194 36 IVGMYAAPSGSTLLIDR Unmodified 1762.9288 0.9287559 1602 P52095 ldcC Lysine decarboxylase, constitutive yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 44.233 42.58 2 0.00072483 21296 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.563 29.826 49731000 0 0 0 0 0 2627300 21444000 0 0 0 0 0 25660000 0 0 0 0 0 0 0 0 0 0 0 10576 1602 10296 197762;197763;197764 122217;122218 122217 0 IVGMYSAPAGSTILIDR Unmodified 1762.9288 0.9287559 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 43.432 41.79 2 8.1719E-09 20704 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 161.48 69.621 400810000 0 0 0 0 0 0 76142000 94121000 81787000 0 0 0 51227000 47294000 50237000 0 0 0 0 0 0 0 0 0 10577 520 10297 197765;197766;197767;197768;197769;197770 122219;122220;122221;122222;122223;122224 122220 6 IVGNNVHPGTAK Unmodified 1205.6517 0.65166983 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 10.962 11.774 2;3 1.5723E-06 2959 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.41 112.5 1359800000 147530000 136260000 166840000 0 0 0 157200000 166620000 157580000 0 0 0 82600000 88487000 81265000 0 0 0 68242000 34726000 72494000 0 0 0 10578 1333 10298 197771;197772;197773;197774;197775;197776;197777;197778;197779;197780;197781;197782;197783;197784;197785;197786;197787;197788;197789;197790;197791;197792;197793;197794 122225;122226;122227;122228;122229;122230;122231;122232;122233;122234;122235;122236;122237;122238 122230 14 IVGQADPVAWVSLQDIQGK Unmodified 2023.0738 0.07384023 1411 P33219 yebF Protein YebF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 51.145 49.889 2;3 5.661E-30 24235 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 223.03 218.33 2078500000 243430000 196800000 200970000 621660 0 1063800 185520000 189530000 171970000 0 0 0 98581000 91457000 90352000 0 0 0 213270000 200990000 193930000 0 0 0 10579 1411 10299 197795;197796;197797;197798;197799;197800;197801;197802;197803;197804;197805;197806;197807;197808;197809;197810;197811;197812;197813;197814;197815;197816;197817;197818;197819;197820 122239;122240;122241;122242;122243;122244;122245;122246;122247;122248;122249;122250;122251;122252;122253;122254;122255;122256;122257 122245 19 IVGQADPVAWVSLQDIQGKDDKWSVPLTVR Unmodified 3319.7565 0.75647584 1411 P33219 yebF Protein YebF yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 51.095 50.083 4 3.851E-06 18149 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 77.566 75.562 23818000 0 0 0 6469200 6169200 6352200 0 0 0 0 0 0 0 0 0 1484000 0 0 0 0 0 0 0 3343700 10580 1411 10300 197821;197822;197823;197824;197825 122258;122259 122259 2 IVGSQPLTYGQSITDPCLGWEDTER Unmodified 2821.3229 0.32287364 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 48.275 46.975 2;3 8.8769E-41 22778 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 219.68 216.16 363210000 66491000 64798000 60301000 0 0 0 9125000 7467700 13483000 0 0 0 20576000 18625000 22154000 0 0 0 29068000 23585000 27533000 0 0 0 10581 44 10301 197826;197827;197828;197829;197830;197831;197832;197833;197834;197835;197836;197837;197838;197839;197840;197841;197842;197843;197844;197845;197846;197847 122260;122261;122262;122263;122264;122265;122266;122267;122268;122269;122270;122271;122272 122269 13 IVGVGQTGKPMVDVIGWR Unmodified 1911.04 0.040037681 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.403 38.701 3 8.251E-10 19163 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.1 105.02 342950000 33131000 27690000 26436000 1406300 884190 1430600 25020000 24717000 24573000 0 0 0 19897000 24027000 16114000 0 0 0 39745000 37195000 38710000 0 1976200 0 10582 1221 10302 197848;197849;197850;197851;197852;197853;197854;197855;197856;197857;197858;197859;197860;197861;197862;197863 122273;122274;122275;122276;122277;122278;122279;122280;122281;122282;122283 122275 11 IVGYDEIFGR Unmodified 1167.5924 0.59242362 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.768 39.831 2 0.00030192 15874 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 111.95 108.38 283940000 10577000 8027700 7919900 0 0 0 6937300 0 7025100 55813000 50009000 48753000 0 7372700 6109900 0 0 0 7690800 0 0 22147000 22300000 23253000 10583 1338 10303 197864;197865;197866;197867;197868;197869;197870;197871;197872;197873;197874;197875;197876;197877 122284;122285;122286;122287;122288;122289;122290 122285 5 IVGYDEIFGRK Unmodified 1295.6874 0.68738664 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 2 1 2 2 33.085 31.59 2;3 8.4693E-05 10490 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 106.62 101.64 322450000 0 0 0 328780 0 0 0 0 0 32565000 34352000 36162000 0 0 0 51695000 64785000 57144000 0 0 0 12912000 17794000 14708000 10584 1338 10304 197878;197879;197880;197881;197882;197883;197884;197885;197886;197887;197888;197889;197890;197891;197892;197893;197894 122291;122292;122293;122294;122295;122296;122297;122298;122299;122300;122301 122293 10 IVHGGEK Unmodified 738.40244 0.40243801 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 5.1532 5.9895 2 0.012973 750 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 79.146 72.759 3539200000 259120000 206420000 197990000 0 0 0 0 0 0 0 0 0 500700000 433690000 474130000 0 0 0 507670000 481870000 477630000 0 0 0 10585 224 10305 197895;197896;197897;197898;197899;197900;197901;197902;197903;197904;197905 122302;122303;122304;122305;122306;122307;122308;122309;122310 122302 9 IVHLGCGAFHR Unmodified 1265.6451 0.64514467 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 1 1 1 1 2 15.414 16.192 2;3 0.00013718 5594 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 83.309 81.556 244280000 35853000 27980000 29634000 0 0 0 19859000 24860000 22009000 0 0 0 16285000 12313000 15422000 0 0 0 11258000 10200000 18612000 0 0 0 10586 1508 10306 197906;197907;197908;197909;197910;197911;197912;197913;197914;197915;197916;197917;197918;197919;197920;197921;197922;197923;197924;197925 122311;122312;122313;122314;122315;122316;122317;122318;122319;122320 122318 8 IVHLGPSLLSVPVK Unmodified 1457.897 0.89698548 1693 P64599 yhbT Uncharacterized protein YhbT yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.891 36.848 3 1.1669E-05 17797 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 91.914 91.914 107290000 0 0 0 0 0 0 8570900 9985200 0 5960500 5361200 5487300 8940200 0 0 0 0 0 19382000 17648000 16345000 3347500 3030900 3230800 10587 1693 10307 197926;197927;197928;197929;197930;197931;197932;197933;197934;197935;197936;197937 122321;122322;122323;122324;122325;122326;122327;122328 122326 8 IVIAPDSFK Unmodified 988.55933 0.55933258 1901 P77364 glxK Glycerate kinase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 31.192 29.796 2 0.10376 14338 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 48.283 23.36 77951000 0 5406400 0 0 0 0 9858400 11044000 8900100 0 0 0 4459800 6629500 5852200 0 0 0 8587900 9270400 7942200 0 0 0 10588 1901 10308 197938;197939;197940;197941;197942;197943;197944;197945;197946;197947 122329;122330;122331 122329 0 IVIDQAVR Unmodified 912.53927 0.53926584 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.104 21.253 2 0.0017297 8660 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 106.42 55.783 321420000 22136000 21987000 17576000 0 0 0 33221000 31153000 28029000 3909600 5225300 3838700 21300000 19735000 21335000 0 0 0 31827000 32064000 28084000 0 0 0 10589 1617 10309 197948;197949;197950;197951;197952;197953;197954;197955;197956;197957;197958;197959;197960;197961;197962;197963 122332;122333;122334;122335;122336 122335 5 IVIDSQNR Unmodified 943.50869 0.50869399 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.748 14.614 2 0.00075967 4683 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 124.34 43.88 334100000 29206000 22411000 24310000 0 0 0 33639000 37945000 32995000 0 0 0 22458000 21761000 19965000 0 0 0 29745000 30583000 29080000 0 0 0 10590 1262 10310 197964;197965;197966;197967;197968;197969;197970;197971;197972;197973;197974;197975 122337;122338;122339;122340 122337 4 IVIEGVER Unmodified 913.52328 0.52328142 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 2 2 1 1 22.161 21.967 2 0.00040535 8801 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.98 105.88 1411300000 100470000 86537000 79179000 1056500 1358400 0 97253000 107670000 106050000 2287400 2089000 0 109430000 110990000 110280000 659400 496290 540530 166200000 161810000 163420000 0 1530600 2021800 10591 311 10311 197976;197977;197978;197979;197980;197981;197982;197983;197984;197985;197986;197987;197988;197989;197990;197991;197992;197993;197994;197995;197996;197997;197998;197999;198000;198001 122341;122342;122343;122344;122345;122346;122347;122348;122349 122348 9 IVIERPAK Unmodified 924.57565 0.57565135 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.614 13.224 2 0.00063307 3165 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 143.23 113.89 2619700000 389170000 390450000 378760000 10184000 8866300 10720000 82450000 85396000 81114000 49914000 41964000 38613000 134200000 140990000 103480000 19043000 6777900 7034500 190840000 178890000 166040000 39255000 34253000 31263000 10592 374 10312 198002;198003;198004;198005;198006;198007;198008;198009;198010;198011;198012;198013;198014;198015;198016;198017;198018;198019;198020;198021;198022;198023;198024;198025 122350;122351;122352;122353;122354;122355;122356;122357;122358;122359;122360;122361;122362;122363;122364;122365;122366;122367;122368;122369;122370;122371;122372 122358 23 IVIGELLK Unmodified 883.57425 0.57425436 1773 P75792 ybiV Sugar phosphatase YbiV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.741 37.067 2 0.0024505 18007 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 100.39 69.101 315530000 33859000 19261000 23306000 0 0 0 27532000 24615000 24041000 0 0 0 24630000 19406000 19122000 0 0 0 34915000 34722000 30121000 0 0 0 10593 1773 10313 198026;198027;198028;198029;198030;198031;198032;198033;198034;198035;198036;198037 122373;122374;122375;122376;122377;122378;122379;122380;122381;122382;122383;122384 122376 12 IVIINPLGAK Unmodified 1036.6645 0.66446635 1293 P27242 waaU Lipopolysaccharide 1,2-N-acetylglucosaminetransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.564 37.705 2 0.0013838 18722 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.064 68.92 110920000 4376300 5280400 2975100 1095600 1154000 874360 8873300 9219700 7666200 3743400 4219900 3106900 7491300 6855400 6199500 0 0 0 9408500 11985000 9414600 2599500 2007000 2372800 10594 1293 10314 198038;198039;198040;198041;198042;198043;198044;198045;198046;198047;198048;198049;198050;198051;198052;198053;198054;198055;198056;198057;198058 122385;122386;122387;122388;122389;122390;122391;122392;122393;122394 122388 10 IVIKVNEDEMYPGEAGIDIYNLTK Oxidation (M) 2739.3677 0.36769857 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 4 3 2 3 4 46.309 45.314 3 5.27E-10 16078 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 117.62 117.02 288370000 0 0 0 0 0 0 0 0 0 13605000 13275000 10365000 0 0 0 70312000 67095000 29460000 0 0 0 23808000 30113000 30336000 10595 463 10315 198059;198060;198061;198062;198063;198064;198065;198066;198067;198068;198069;198070;198071;198072;198073;198074;198075;198076;198077;198078;198079;198080 122395;122396;122397;122398;122399;122400;122401;122402;122403;122404;122405;122406;122407;122408;122409;122410;122411;122412;122413;122414 122399 267 20 IVIKVNEDEMYPGEAGIDIYNLTK Unmodified 2723.3728 0.37278395 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 3 3 3 3 3 3 3 49.082 48.087 2;3;4 1.9929E-49 18290 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 261.31 261.3 11096000000 0 0 0 7986000 0 7416600 0 0 0 412490000 402410000 484280000 0 0 0 2432400000 2198500000 2728100000 0 0 0 775200000 825480000 821300000 10596 463 10315 198081;198082;198083;198084;198085;198086;198087;198088;198089;198090;198091;198092;198093;198094;198095;198096;198097;198098;198099;198100;198101;198102;198103;198104;198105;198106;198107;198108;198109 122415;122416;122417;122418;122419;122420;122421;122422;122423;122424;122425;122426;122427;122428;122429;122430;122431;122432;122433;122434;122435;122436 122416 22 IVILPHQDLCPDGAVLEANSGETILDAALR Unmodified 3199.6547 0.65471289 550 P0A9R4 fdx 2Fe-2S ferredoxin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 2 3 2 2 2 2 2 2 2 53.383 51.943 3;4 2.1864E-23 24345 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 170.18 164.52 3651400000 218770000 221160000 241270000 1584100 0 1074700 247340000 211760000 229600000 0 0 0 355450000 377120000 352670000 0 0 0 403310000 406380000 383960000 0 0 0 10597 550 10316 198110;198111;198112;198113;198114;198115;198116;198117;198118;198119;198120;198121;198122;198123;198124;198125;198126;198127;198128;198129;198130;198131;198132;198133;198134;198135;198136;198137 122437;122438;122439;122440;122441;122442;122443;122444;122445;122446;122447;122448;122449;122450;122451;122452;122453;122454;122455;122456;122457;122458;122459;122460 122459 24 IVILVTK Unmodified 784.54223 0.54222595 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.17 25.944 2 0.0023307 11795 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.19 60.476 1173000000 205390000 208970000 166920000 1050800 887390 1116600 59838000 55448000 54485000 0 0 623320 61018000 54412000 57764000 0 0 0 81929000 86021000 77145000 0 0 0 10598 1455 10317 198138;198139;198140;198141;198142;198143;198144;198145;198146;198147;198148;198149;198150;198151;198152;198153 122461;122462;122463;122464;122465;122466;122467;122468;122469;122470;122471;122472;122473 122465 13 IVIMDEPTSSLTEK Unmodified 1561.7909 0.79092501 593 P0AAG8 mglA Galactose/methyl galactoside import ATP-binding protein MglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.159 32.728 2 8.1373E-06 15584 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.16 102.77 71066000 17455000 18002000 16647000 2587800 2487800 2828200 0 0 0 0 0 0 0 0 0 0 0 0 4770800 3291600 2995500 0 0 0 10599 593 10318 198154;198155;198156;198157;198158;198159;198160;198161;198162 122474;122475;122476;122477 122476 4 IVINNQVGFTTSNPLDAR Unmodified 1958.0221 0.022139011 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 41.457 39.75 2;3 4.2945E-55 18586 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 274.05 270.73 1407000000 113690000 108610000 99957000 5548800 5009000 4560000 54077000 53008000 51163000 0 0 4068500 85730000 94897000 92756000 0 0 2010500 201470000 204510000 194600000 10887000 9996900 10434000 10600 937 10319 198163;198164;198165;198166;198167;198168;198169;198170;198171;198172;198173;198174;198175;198176;198177;198178;198179;198180;198181;198182;198183;198184;198185;198186;198187;198188;198189;198190;198191;198192;198193;198194;198195;198196;198197;198198;198199;198200 122478;122479;122480;122481;122482;122483;122484;122485;122486;122487;122488;122489;122490;122491;122492;122493;122494;122495;122496;122497;122498;122499;122500;122501 122498 24 IVIQEVLEASDIPYR Unmodified 1743.9407 0.94070079 1768 P75767 ybhK Putative gluconeogenesis factor yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 51.232 49.991 2 3.5823E-06 23585 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.18 102.08 50252000 9798000 8299900 0 0 0 0 4778000 2752700 0 0 0 0 3876300 3924100 4142800 0 0 0 3781700 5279000 3619600 0 0 0 10601 1768 10320 198201;198202;198203;198204;198205;198206;198207;198208;198209;198210 122502 122502 1 IVIRPLPGLPVIR Unmodified 1441.9497 0.94968976 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 2 2 2 3 2 2 2 2 1 1 1 2 2 2 3 2 2 42.897 41.17 2;3 8.425E-13 19936 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.9 164.9 3067600000 229050000 171910000 197350000 79080000 84801000 75264000 147850000 124960000 102280000 64118000 49103000 53876000 113120000 121480000 135710000 14431000 21116000 17994000 276120000 326370000 339180000 116140000 100680000 105630000 10602 150 10321 198211;198212;198213;198214;198215;198216;198217;198218;198219;198220;198221;198222;198223;198224;198225;198226;198227;198228;198229;198230;198231;198232;198233;198234;198235;198236;198237;198238;198239;198240;198241;198242;198243;198244;198245;198246;198247;198248;198249;198250;198251;198252;198253;198254;198255;198256;198257;198258 122503;122504;122505;122506;122507;122508;122509;122510;122511;122512;122513;122514;122515;122516;122517;122518;122519;122520;122521;122522;122523;122524;122525;122526;122527;122528;122529;122530;122531;122532;122533;122534;122535;122536;122537;122538;122539 122534 35 IVIVANGAPYGSESLFNSLR Unmodified 2106.111 0.11095402 629 P0AB52 ychN Protein YchN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 2 2 2 2 1 2 50.966 49.71 2;3 3.0343E-24 24089 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 202.13 199 285450000 44179000 40468000 33286000 0 0 242460 28144000 20918000 21030000 0 0 0 15846000 15430000 15549000 0 0 0 21722000 8910400 19725000 0 0 0 10603 629 10322 198259;198260;198261;198262;198263;198264;198265;198266;198267;198268;198269;198270;198271;198272;198273;198274;198275;198276;198277;198278;198279;198280;198281;198282 122540;122541;122542;122543;122544;122545;122546;122547;122548;122549 122546 10 IVIVGGGAGGLEMATQLGHK Oxidation (M) 1923.0248 0.024781548 27 P00393 ndh NADH dehydrogenase yes yes 0 1 0 By matching By MS/MS By MS/MS 1 1 1 33.713 31.461 3 0.0011864 12526 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 62.203 56.422 5715100 0 0 0 914250 0 0 0 0 0 2793400 2007400 0 0 0 0 0 0 0 0 0 0 0 0 0 10604 27 10323 198283;198284;198285 122550;122551 122550 11 2 IVIVGGGAGGLEMATQLGHK Unmodified 1907.0299 0.029866926 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.333 36.718 3 8.2888E-15 14295 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 147.56 147.56 840120000 18416000 15266000 17385000 6801600 8251100 8962200 83608000 83663000 72913000 67581000 60368000 69238000 37251000 39019000 27470000 6414900 6922200 6168600 51444000 45573000 47513000 19640000 18275000 21976000 10605 27 10323 198286;198287;198288;198289;198290;198291;198292;198293;198294;198295;198296;198297;198298;198299;198300;198301;198302;198303;198304;198305;198306;198307;198308;198309 122552;122553;122554;122555;122556;122557;122558;122559;122560;122561;122562;122563;122564;122565;122566;122567 122557 15 IVIVTSGAIAAGR Unmodified 1226.7347 0.73467118 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.925 29.541 2 9.0695E-07 13695 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.28 126.11 202620000 21324000 19129000 17169000 663570 0 503510 22075000 19144000 16607000 0 0 0 11534000 12547000 11957000 0 0 0 16317000 18144000 15503000 0 0 0 10606 328 10324 198310;198311;198312;198313;198314;198315;198316;198317;198318;198319;198320;198321;198322;198323 122568;122569;122570;122571;122572;122573;122574;122575;122576 122573 9 IVLADAK Unmodified 728.44324 0.44324019 1521 P39304 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase UlaD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 15.101 15.921 2 0.014291 5476 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.913 34.153 126780000 9680500 0 6650300 0 216960 0 6917200 20792000 18271000 0 0 0 13369000 9915100 0 0 0 0 14304000 13105000 13554000 0 0 0 10607 1521 10325 198324;198325;198326;198327;198328;198329;198330;198331;198332;198333;198334 122577;122578 122577 1 IVLENHTDISGK Unmodified 1324.6987 0.69867961 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 2 1 1 2 2 2 1 2 2 2 1 2 16.562 17.038 2;3 8.9778E-09 5682 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 175.65 161.83 284740000 0 0 0 0 776740 973590 0 0 1717800 1444600 0 2448400 102930000 34864000 32636000 15343000 11683000 12049000 9925700 24754000 20339000 4068400 3446000 5340100 10608 647 10326 198335;198336;198337;198338;198339;198340;198341;198342;198343;198344;198345;198346;198347;198348;198349;198350;198351;198352;198353;198354;198355;198356;198357;198358;198359;198360 122579;122580;122581;122582;122583;122584;122585;122586;122587;122588 122585 10 IVLGGEALDGFTSR Unmodified 1433.7514 0.75144346 1963 Q46871 yqjH NADPH-dependent ferric-chelate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 41.433 40.72 2 5.5495E-11 18960 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 131.43 123.51 38824000 0 0 0 0 0 0 0 0 0 0 0 0 16677000 15211000 0 3980000 2956800 0 0 0 0 0 0 0 10609 1963 10327 198361;198362;198363;198364;198365;198366;198367 122589;122590;122591;122592;122593 122593 5 IVLPEGDEPR Unmodified 1123.5873 0.58733824 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.307 23.414 2 1.8129E-06 10471 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.88 139.58 4836500000 242070000 222220000 231610000 2262700 1811000 1913500 481140000 461970000 429830000 27094000 23879000 30938000 503740000 461260000 470220000 2384600 1616900 1386600 408900000 423740000 402850000 3660100 0 0 10610 539 10328 198368;198369;198370;198371;198372;198373;198374;198375;198376;198377;198378;198379;198380;198381;198382;198383;198384;198385;198386;198387;198388;198389 122594;122595;122596;122597;122598;122599;122600;122601;122602;122603;122604;122605;122606;122607;122608 122598 15 IVLPFTK Unmodified 816.51093 0.51092582 1020 P0AGH8 pstC Phosphate transport system permease protein PstC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.126 34.542 2 0.0071597 17110 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 92.467 81.65 385600000 0 0 0 393730 422490 563090 28189000 21930000 17436000 23560000 17116000 18271000 29035000 29215000 24688000 8800800 5281600 5777200 38246000 36638000 36333000 15377000 14700000 13627000 10611 1020 10329 198390;198391;198392;198393;198394;198395;198396;198397;198398;198399;198400;198401;198402;198403;198404;198405;198406;198407;198408;198409;198410 122609;122610;122611;122612;122613;122614;122615;122616;122617;122618;122619;122620;122621;122622;122623;122624;122625;122626 122615 18 IVLQLDGEEIVDCVPDIGYHHR Unmodified 2576.2693 0.26932193 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 45.958 44.252 3;4 3.3028E-22 17621 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 174.2 170.54 2057300000 80135000 46004000 47903000 28113000 21035000 16194000 175020000 141110000 135630000 118300000 90179000 92379000 99862000 106050000 127060000 0 0 0 213400000 194290000 155690000 51437000 61547000 55966000 10612 1426 10330 198411;198412;198413;198414;198415;198416;198417;198418;198419;198420;198421;198422;198423;198424;198425;198426;198427;198428;198429;198430;198431;198432;198433;198434;198435;198436;198437;198438;198439;198440;198441;198442;198443;198444;198445;198446 122627;122628;122629;122630;122631;122632;122633;122634;122635;122636;122637;122638;122639;122640;122641;122642;122643;122644;122645;122646;122647;122648;122649;122650;122651;122652;122653;122654 122632 28 IVLTRDPDGEER Unmodified 1398.7103 0.71030693 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 15.393 15.753 2;3 0.00027116 4436 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 83.314 61.082 113580000 0 0 0 8342700 7911400 7562000 0 0 0 14309000 13483000 14299000 0 0 0 3019500 3876500 4376900 0 0 0 11113000 12682000 12601000 10613 930 10331 198447;198448;198449;198450;198451;198452;198453;198454;198455;198456;198457;198458;198459;198460;198461;198462;198463;198464;198465;198466;198467 122655;122656;122657;122658;122659;122660;122661;122662;122663 122656 9 IVLVETSHTGNMGSVAR Unmodified 1769.9094 0.90941744 825 P0AE01 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 1 23.185 22.431 2;3 5.7544E-31 9897 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 229.97 218.62 1652000000 110110000 120000000 119140000 0 0 0 114010000 122860000 129840000 0 0 1454100 159130000 132390000 131200000 0 0 0 146910000 183150000 179740000 0 0 2011200 10614 825 10332 198468;198469;198470;198471;198472;198473;198474;198475;198476;198477;198478;198479;198480;198481;198482;198483;198484;198485;198486;198487;198488;198489;198490;198491;198492;198493 122664;122665;122666;122667;122668;122669;122670;122671;122672;122673;122674;122675;122676;122677;122678;122679;122680;122681;122682;122683;122684;122685 122668 22 IVLVGFR Unmodified 802.50651 0.50650915 850 P0AED9 dcm DNA-cytosine methyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.026 33.449 2 0.0010757 15800 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.2 62.371 67294000 4873900 4817700 4670200 0 0 0 6202600 4856700 4971600 2515400 2250100 2877000 4498600 4470400 3185000 3039100 0 0 4693500 4666000 4706300 0 0 0 10615 850 10333 198494;198495;198496;198497;198498;198499;198500;198501;198502;198503;198504;198505;198506;198507;198508;198509 122686;122687;122688 122687 3 IVMPPKPDENTAALWQQLADAQSSFDPR Unmodified 3124.5288 0.52878409 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 2 2 2 1 1 2 1 1 1 1 1 1 1 53.393 52.002 3;4 4.7336E-16 25648 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.89 141.66 415570000 26162000 31348000 23396000 0 1970400 604390 93734000 91491000 86588000 3680100 3759000 10663000 6622200 5125100 6088400 0 6010400 0 7483500 5771700 5072300 0 0 0 10616 1440 10334 198510;198511;198512;198513;198514;198515;198516;198517;198518;198519;198520;198521;198522;198523;198524;198525;198526;198527;198528;198529;198530;198531;198532 122689;122690;122691;122692;122693;122694;122695;122696 122691 8 IVMSDAER Unmodified 919.44332 0.44331654 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.562 14.447 2 0.0049431 4511 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.435 70.508 218170000 35679000 29018000 23728000 0 0 454560 18634000 19121000 16333000 0 0 0 13656000 9942900 11560000 0 0 0 13446000 15330000 11272000 0 0 0 10617 88 10335 198533;198534;198535;198536;198537;198538;198539;198540;198541;198542;198543;198544;198545 122697;122698;122699 122698 2 IVNAYEAWEEAEQK Unmodified 1678.7839 0.7838658 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.34 37.553 2 8.9747E-15 18164 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 196.48 191.59 463340000 61877000 58676000 51143000 0 1973300 2194500 40281000 41391000 42260000 0 2119100 2852400 22511000 21260000 19427000 0 0 0 29689000 29277000 34173000 0 2239300 0 10618 530 10336 198546;198547;198548;198549;198550;198551;198552;198553;198554;198555;198556;198557;198558;198559;198560;198561;198562 122700;122701;122702;122703;122704;122705;122706;122707;122708;122709 122705 10 IVNLPGSEITQQR Unmodified 1453.7889 0.7888916 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 1 1 2 1 1 1 2 2 2 2 2 2 30.088 28.556 2;3 1.194E-07 10593 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 155.15 141.8 1603100000 29257000 27458000 28874000 7961200 8600700 9877600 128420000 129180000 115600000 47274000 43993000 39991000 4952500 72641000 6625000 6648800 0 4202000 142640000 137540000 140920000 163280000 149180000 157990000 10619 205 10337 198563;198564;198565;198566;198567;198568;198569;198570;198571;198572;198573;198574;198575;198576;198577;198578;198579;198580;198581;198582;198583;198584;198585;198586;198587;198588;198589;198590;198591;198592;198593;198594;198595;198596;198597;198598;198599;198600 122710;122711;122712;122713;122714;122715;122716;122717;122718;122719;122720;122721;122722;122723 122712 11 IVNPEVTDKNHDESSNSAP Unmodified 2051.9396 0.93959117 1381 P31806 nnr Bifunctional NAD(P)H-hydrate repair enzyme Nnr;ADP-dependent (S)-NAD(P)H-hydrate dehydratase;NAD(P)H-hydrate epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 14.499 15.175 3 0.16252 4953 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 15.942 15.155 33655000 8869700 7484400 7641000 0 0 0 2583900 3382800 3692700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10620 1381 10338 198601;198602;198603;198604;198605;198606 122724;122725;122726 122725 3 IVNPIMGVK Unmodified 969.56812 0.56812313 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.67 28.343 2 0.0011501 12628 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 91.9 73.118 642480000 88334000 82849000 69588000 13259000 12046000 10621000 53540000 46958000 44169000 0 0 0 35262000 30712000 31503000 0 0 0 36825000 40780000 46033000 0 0 0 10621 235 10339 198607;198608;198609;198610;198611;198612;198613;198614;198615;198616;198617;198618;198619;198620;198621 122727;122728;122729;122730;122731;122732;122733;122734;122735;122736;122737;122738;122739;122740;122741 122739 15 IVPDAAFSFR Unmodified 1121.5869 0.58694431 875 P0AEN1 fre NAD(P)H-flavin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 38.034 36.499 2 1.6668E-05 17467 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.04 146.68 151750000 50165000 49053000 45782000 0 0 0 0 0 0 1872400 0 0 0 0 0 894020 0 0 0 0 0 0 3982000 0 10622 875 10340 198622;198623;198624;198625;198626;198627;198628 122742;122743;122744;122745 122745 4 IVPDFAAAGASIITFHPEASEHVDR Unmodified 2649.3187 0.31871496 976 P0AG07 rpe Ribulose-phosphate 3-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 45.364 43.971 3;4 2.0147E-10 21296 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.81 121.98 887520000 146830000 147090000 123330000 0 0 0 64835000 61730000 0 0 0 0 34906000 46128000 38994000 0 0 0 78744000 78473000 66456000 0 0 0 10623 976 10341 198629;198630;198631;198632;198633;198634;198635;198636;198637;198638;198639;198640;198641;198642 122746;122747;122748;122749;122750;122751;122752;122753;122754;122755;122756;122757;122758 122755 13 IVPELTFFYDNSLVEGMR Unmodified 2129.0503 0.050327596 342 P0A7G2 rbfA Ribosome-binding factor A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.185 53.705 3 0.033944 21885 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 39.237 35.849 158490000 24142000 16230000 14160000 0 0 0 0 8979900 9044600 7586000 5427000 6188800 8662200 8417200 8773100 0 0 0 14130000 11975000 14771000 0 0 0 10624 342 10342 198643;198644;198645;198646;198647;198648;198649;198650;198651;198652;198653;198654;198655;198656 122759 122759 1 IVPGLTMAALSFGHLPAVFVPSGPMASGLPNK Unmodified 3175.6926 0.69261872 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 55.016 53.503 3 0.15482 26534 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 16.971 14.805 236000000 0 0 0 0 0 0 32226000 24375000 30728000 0 0 0 29473000 0 22476000 0 0 0 29834000 34842000 32050000 0 0 0 10625 785 10343 198657;198658;198659;198660;198661;198662;198663;198664 122760;122761 122760 2 IVPGQGR Unmodified 725.41842 0.41842242 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.07 11.9 2 0.015476 3034 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.716 63.949 504480000 29012000 31462000 30042000 471650 0 0 46124000 39004000 47636000 0 0 0 52600000 38273000 46319000 0 0 0 44407000 47764000 51363000 0 0 0 10626 1500 10344 198665;198666;198667;198668;198669;198670;198671;198672;198673;198674;198675;198676;198677 122762;122763 122762 2 IVPLIHDIDELR Unmodified 1431.8086 0.80856441 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 2 2 1 2 2 2 2 2 1 1 2 2 2 1 1 2 41.03 39.288 2;3 3.5159E-05 19509 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.718 81.959 718040000 11855000 14555000 14241000 1747300 1718400 1650100 75442000 70039000 60317000 13038000 14342000 13372000 46277000 49674000 49068000 4136800 0 3745000 83447000 83739000 81724000 7511800 7491100 8907200 10627 1492 10345 198678;198679;198680;198681;198682;198683;198684;198685;198686;198687;198688;198689;198690;198691;198692;198693;198694;198695;198696;198697;198698;198699;198700;198701;198702;198703;198704;198705;198706;198707;198708;198709;198710;198711;198712;198713 122764;122765;122766;122767;122768;122769;122770;122771;122772;122773;122774;122775;122776 122769 11 IVPTVLK Unmodified 768.51093 0.51092582 808 P0ADU2 ygiN Probable quinol monooxygenase YgiN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.755 21.854 2 0.0086175 9396 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 88.643 83.105 1102900000 0 0 0 0 0 0 590570000 0 512380000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10628 808 10346 198714;198715;198716;198717;198718;198719;198720;198721;198722;198723;198724;198725 122777;122778;122779;122780;122781;122782;122783;122784;122785;122786;122787;122788 122779 12 IVQAMEEIKEELAAR Unmodified 1728.908 0.90802046 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.656 37.916 3 4.1569E-07 18224 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.31 104.63 242670000 32097000 36009000 25092000 0 675900 606880 23008000 23445000 24417000 0 724420 0 13167000 12090000 11391000 0 0 0 13208000 13596000 13147000 0 0 0 10629 426 10347 198726;198727;198728;198729;198730;198731;198732;198733;198734;198735;198736;198737;198738;198739;198740 122789;122790;122791;122792;122793;122794;122795;122796 122793 8 IVQATGVGLHTGK Unmodified 1279.7248 0.72483478 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 14.606 15.355 2;3 7.1729E-07 5077 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.27 167.94 500880000 53561000 39910000 37839000 1353900 0 0 40391000 40441000 37358000 0 0 0 29595000 26428000 26518000 0 0 0 59922000 54229000 51926000 0 1407800 0 10630 303 10348 198741;198742;198743;198744;198745;198746;198747;198748;198749;198750;198751;198752;198753;198754;198755;198756;198757;198758;198759;198760;198761;198762;198763;198764;198765;198766 122797;122798;122799;122800;122801;122802;122803;122804;122805;122806;122807;122808;122809;122810;122811;122812;122813;122814;122815;122816 122810 19 IVQFFAQR Unmodified 1007.5553 0.55525025 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.553 30.199 2 0.00034806 14114 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 144.29 139.94 220750000 24486000 29183000 24671000 0 0 0 18952000 13874000 14910000 0 0 0 10594000 10800000 10693000 0 0 0 21225000 20191000 21174000 0 0 0 10631 279 10349 198767;198768;198769;198770;198771;198772;198773;198774;198775;198776;198777;198778 122817;122818;122819;122820;122821;122822 122822 6 IVQFFAQRPQVQER Unmodified 1744.9373 0.93728717 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 28.25 26.887 2;3 1.167E-14 11736 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 155.98 135.39 1155800000 147970000 141060000 112170000 9833800 8710000 11460000 63220000 61725000 59464000 13867000 10132000 12410000 61134000 50515000 47401000 0 0 0 104250000 95009000 116560000 8970300 10905000 9065100 10632 279 10350 198779;198780;198781;198782;198783;198784;198785;198786;198787;198788;198789;198790;198791;198792;198793;198794;198795;198796;198797;198798;198799;198800;198801;198802;198803;198804;198805;198806;198807;198808;198809;198810;198811;198812;198813;198814;198815;198816 122823;122824;122825;122826;122827;122828;122829;122830;122831;122832;122833;122834;122835;122836;122837;122838;122839;122840 122837 18 IVQMHANK Oxidation (M) 955.49094 0.49093544 264 P0A6M8 fusA Elongation factor G yes yes 0 1 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 4.6222 5.502 2 0.003171 992 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.07 87.71 127000000 0 0 0 0 0 0 18148000 16009000 15253000 0 0 0 0 15127000 14586000 0 0 0 16253000 15082000 16536000 0 0 0 10633 264 10351 198817;198818;198819;198820;198821;198822;198823;198824 122841;122842;122843;122844 122841 115 2 IVQMHANK Unmodified 939.49602 0.49602082 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.495 11.348 2 0.0016332 2621 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.22 96.808 4171200000 456600000 456740000 365810000 15295000 19974000 0 343650000 341820000 317720000 0 0 0 260200000 248280000 313670000 0 0 0 330950000 327170000 373320000 0 0 0 10634 264 10351 198825;198826;198827;198828;198829;198830;198831;198832;198833;198834;198835;198836;198837;198838 122845;122846;122847;122848;122849;122850;122851;122852;122853;122854;122855;122856 122845 7 IVQMHANKR Unmodified 1095.5971 0.59713184 264 P0A6M8 fusA Elongation factor G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 2 2 2 2 3 2 2 1 1 2 1 1 1 2 2 2 2 1 8.4772 9.1863 2;3 9.1899E-05 2382 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.04 135.08 2276200000 351650000 413570000 150430000 14726000 17363000 15772000 179760000 204500000 191450000 13465000 13616000 7713100 13306000 71242000 16678000 0 1225700 7106100 191990000 174820000 213590000 0 7619000 4582300 10635 264 10352 198839;198840;198841;198842;198843;198844;198845;198846;198847;198848;198849;198850;198851;198852;198853;198854;198855;198856;198857;198858;198859;198860;198861;198862;198863;198864;198865;198866;198867;198868;198869;198870;198871;198872;198873;198874;198875;198876;198877;198878 122857;122858;122859;122860;122861;122862;122863;122864;122865;122866;122867;122868;122869;122870;122871;122872;122873;122874;122875;122876;122877;122878 122871 21 IVQMHANKR Oxidation (M) 1111.592 0.59204647 264 P0A6M8 fusA Elongation factor G yes yes 0 1 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 2 1 2 2 2 2 2 2 6.8904 7.7363 2 0.0033191 951 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 91.906 56.55 74518000 5601400 3433300 6359200 0 0 0 7699200 8448700 6338800 0 0 0 1671700 5118500 6291400 0 0 0 7723900 6481000 9350900 0 0 0 10636 264 10352 198879;198880;198881;198882;198883;198884;198885;198886;198887;198888;198889;198890;198891;198892;198893;198894;198895;198896;198897;198898;198899 122879;122880;122881;122882;122883;122884;122885;122886;122887;122888;122889;122890 122881 115 12 IVQQPGETWFAR Unmodified 1430.7306 0.73064844 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.019 32.571 2 1.0435E-09 15397 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 179.81 151.79 545160000 43777000 54558000 46263000 0 0 0 45480000 50289000 42929000 0 0 0 44732000 37628000 32788000 0 0 0 47699000 50583000 48436000 0 0 0 10637 1262 10353 198900;198901;198902;198903;198904;198905;198906;198907;198908;198909;198910;198911 122891;122892;122893;122894;122895;122896;122897;122898;122899;122900;122901;122902 122898 12 IVQSPDVIPADSEAGR Unmodified 1652.837 0.836964 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.448 26.262 2 1.1513E-23 11490 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 204.49 201.01 947490000 121400000 104670000 95697000 8160100 7955700 7979700 56689000 59488000 58970000 20198000 16039000 15447000 51768000 41100000 46976000 5556800 3589800 4055100 63455000 68982000 61403000 8835500 10563000 8518000 10638 1829 10354 198912;198913;198914;198915;198916;198917;198918;198919;198920;198921;198922;198923;198924;198925;198926;198927;198928;198929;198930;198931;198932;198933;198934;198935 122903;122904;122905;122906;122907;122908;122909;122910;122911;122912;122913;122914;122915;122916;122917;122918;122919;122920;122921;122922;122923;122924;122925;122926 122924 23 IVQVIGAVVDVEFPQDAVPR Unmodified 2150.1736 0.17355427 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 53.887 52.647 2;3 2.8521E-37 24904 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 289.65 283.18 2651000000 39157000 36083000 30979000 24569000 25798000 22618000 253090000 256150000 210540000 106090000 91875000 91545000 205140000 204130000 157100000 36265000 34096000 31289000 208240000 197040000 193860000 63529000 60417000 71384000 10639 646 10355 198936;198937;198938;198939;198940;198941;198942;198943;198944;198945;198946;198947;198948;198949;198950;198951;198952;198953;198954;198955;198956;198957;198958;198959;198960;198961;198962;198963;198964;198965;198966;198967;198968;198969;198970;198971;198972;198973;198974;198975;198976;198977;198978;198979;198980;198981;198982;198983 122927;122928;122929;122930;122931;122932;122933;122934;122935;122936;122937;122938;122939;122940;122941;122942;122943;122944;122945;122946;122947;122948;122949;122950;122951;122952;122953;122954;122955;122956;122957;122958;122959 122954 30 IVQVPFAELVK Unmodified 1241.7384 0.73835958 434 P0A8I5 trmB tRNA (guanine-N(7)-)-methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.624 46.095 2 0.0056361 18979 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 75.294 74.987 458390000 38705000 42147000 32292000 933570 0 884060 25943000 27724000 20579000 4367500 3182900 2864200 33935000 34123000 32077000 0 0 0 42377000 50415000 48407000 5339300 6497100 5592200 10640 434 10356 198984;198985;198986;198987;198988;198989;198990;198991;198992;198993;198994;198995;198996;198997;198998;198999;199000;199001;199002;199003 122960;122961;122962;122963;122964;122965;122966;122967;122968;122969 122960 9 IVRDELLGEGK Unmodified 1227.6823 0.68230126 1886 P77212 rclA Probable pyridine nucleotide-disulfide oxidoreductase RclA yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 17.634 18.334 2 0.029735 6677 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.942 55.327 19265000 5951300 5898700 7414500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10641 1886 10357 199004;199005;199006 122970 122970 1 IVRPGYAIEYDFFDPR Unmodified 1956.9734 0.9733979 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.659 44.22 3 4.3229E-07 22039 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.46 104.43 562440000 48797000 42384000 38246000 0 0 0 37690000 34307000 44995000 0 0 0 42632000 35571000 36189000 0 0 0 72434000 66768000 62424000 0 0 0 10642 280 10358 199007;199008;199009;199010;199011;199012;199013;199014;199015;199016;199017;199018 122971;122972;122973;122974;122975;122976;122977;122978;122979;122980;122981;122982 122971 10 IVSAPFAIVGSIGVVAQMPNFNR Unmodified 2386.2831 0.2831215 977 P0AG14 sohB Probable protease SohB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 55.281 53.765 3 0.0029762 21742 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 54.882 47.349 40534000 0 0 2786000 0 3853400 0 2945800 3431000 0 7446600 11516000 8554300 0 0 0 0 0 0 0 0 0 0 0 0 10643 977 10359 199019;199020;199021;199022;199023;199024;199025 122983 122983 1 IVSDLDDAIAHIR Unmodified 1436.7623 0.7623425 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 36.537 34.913 2;3 6.6362E-24 16868 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 235.66 215.36 1799400000 201440000 196010000 163390000 801580 815740 0 157580000 142470000 148450000 0 498000 926330 109490000 120880000 120140000 0 0 0 149200000 139480000 147830000 0 0 0 10644 148 10360 199026;199027;199028;199029;199030;199031;199032;199033;199034;199035;199036;199037;199038;199039;199040;199041;199042;199043;199044;199045;199046;199047;199048;199049;199050;199051;199052;199053 122984;122985;122986;122987;122988;122989;122990;122991;122992;122993;122994;122995;122996;122997;122998;122999;123000;123001;123002;123003;123004;123005;123006;123007 122997 24 IVSEFGR Unmodified 806.42865 0.42865276 823 P0ADZ4 rpsO 30S ribosomal protein S15 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 3 2 2 2 2 2 3 2 3 3 3 2 2 2 2 2 2 17.291 17.757 1;2 0.0004457 6372 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 163.84 124.7 8042200000 772970000 729970000 662240000 31184000 23034000 20456000 390630000 340750000 366300000 87981000 80669000 73709000 336580000 322780000 319230000 618040000 467150000 517550000 624020000 583070000 546550000 43143000 44586000 39605000 10645 823 10361 199054;199055;199056;199057;199058;199059;199060;199061;199062;199063;199064;199065;199066;199067;199068;199069;199070;199071;199072;199073;199074;199075;199076;199077;199078;199079;199080;199081;199082;199083;199084;199085;199086;199087;199088;199089;199090;199091;199092;199093;199094;199095;199096;199097;199098;199099;199100;199101;199102;199103;199104;199105;199106;199107 123008;123009;123010;123011;123012;123013;123014;123015;123016;123017;123018;123019;123020;123021;123022;123023;123024;123025;123026;123027;123028;123029;123030;123031;123032 123023 22 IVSGDDVDLNR Unmodified 1201.5939 0.59388018 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.334 20.479 2 0.00019328 8130 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 105.36 83.852 171400000 0 0 0 1426100 1735300 1695600 42514000 31019000 25227000 0 2828900 0 0 0 0 0 0 355500 29942000 32458000 0 2200000 0 0 10646 582 10362 199108;199109;199110;199111;199112;199113;199114;199115;199116;199117;199118;199119 123033;123034;123035;123036;123037;123038 123038 6 IVSIMVEMVETR Unmodified 1405.7309 0.73090771 1690 P64585 yqjE Inner membrane protein YqjE yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 1 1 48.117 46.535 2 1.5697E-06 18456 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 106.29 98.365 56899000 0 0 0 0 0 0 13454000 21555000 11799000 4260800 4051100 0 0 0 0 0 905420 0 0 0 0 874290 0 0 10647 1690 10363 199120;199121;199122;199123;199124;199125;199126;199127;199128 123039;123040;123041;123042;123043 123041 3 IVSNASCTTNCIIPVIK Unmodified 1888.9751 0.97505416 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.852 36.179 2 2.6648E-10 17889 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.59 126.49 125420000 7756400 10222000 5715900 0 0 0 13375000 10681000 11014000 0 0 0 9484800 7180200 10866000 0 0 0 13726000 11835000 13566000 0 0 0 10648 505 10364 199129;199130;199131;199132;199133;199134;199135;199136;199137;199138;199139;199140 123044;123045;123046;123047;123048;123049 123045 6 IVSSSHDR Unmodified 899.44609 0.44609374 587 P0AAC6 yccA Modulator of FtsH protease YccA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.9314 7.5754 2 0.0010836 1793 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 111.82 102.3 211620000 0 0 0 1776900 1819700 1407000 28210000 25006000 24444000 10896000 14152000 14744000 15357000 13613000 12524000 0 0 1276300 24967000 0 0 7763000 5227400 8432700 10649 587 10365 199141;199142;199143;199144;199145;199146;199147;199148;199149;199150;199151;199152;199153;199154;199155;199156;199157 123050;123051;123052 123050 2 IVSVGMFEHVGPK Unmodified 1398.733 0.73295662 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.945 30.223 3 1.8632E-05 11548 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 81.494 72.444 362380000 0 0 0 3980100 2696400 2609500 0 278580000 0 28763000 19205000 20065000 0 0 0 1667900 0 0 0 0 0 2959500 0 1850500 10650 522 10366 199158;199159;199160;199161;199162;199163;199164;199165;199166;199167;199168;199169 123053;123054;123055;123056;123057;123058 123055 6 IVSYAQGFSQLR Unmodified 1367.7197 0.7197494 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 1 1 1 2 2 2 33.502 32.159 2;3 1.0676E-12 14616 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 240.47 229.65 14547000000 812170000 816590000 663710000 0 2866700 0 1308100000 1296900000 1182300000 4335900 0 0 1326600000 1251900000 1121400000 2848200 2685700 1986700 1579800000 1642800000 1530300000 0 0 0 10651 24 10367 199170;199171;199172;199173;199174;199175;199176;199177;199178;199179;199180;199181;199182;199183;199184;199185;199186;199187;199188;199189;199190;199191;199192;199193;199194;199195;199196;199197;199198 123059;123060;123061;123062;123063;123064;123065;123066;123067;123068;123069;123070;123071;123072;123073;123074;123075;123076;123077;123078;123079;123080 123077 22 IVTALDIMTEGPLGGAAFNNEFGR Unmodified 2492.237 0.23695917 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 55.21 53.807 3 9.2485E-11 26806 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.56 130.48 152000000 47675000 46920000 50167000 0 0 0 0 0 0 0 0 0 0 0 7241600 0 0 0 0 0 0 0 0 0 10652 1107 10368 199199;199200;199201;199202 123081;123082 123081 2 IVTEGDK Unmodified 760.39668 0.39668393 1719 P68191 sra Stationary-phase-induced ribosome-associated protein yes yes 0 0 0 By MS/MS 1 10.784 10.887 2 0.018022 2121 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 79.146 38.293 11893000 0 0 0 0 0 0 0 0 0 11893000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10653 1719 10369 199203 123083 123083 1 IVTEGDKSSVVNNPTGR Unmodified 1771.9064 0.90644055 1719 P68191 sra Stationary-phase-induced ribosome-associated protein yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 2 1 14.606 15.029 2;3 1.2962E-14 4103 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 141.1 140.2 71076000 0 0 0 3415700 4142700 3540400 0 0 0 21329000 20872000 16288000 0 0 0 0 1488200 0 0 0 0 0 0 0 10654 1719 10370 199204;199205;199206;199207;199208;199209;199210;199211;199212;199213;199214 123084;123085;123086;123087;123088 123084 5 IVTEIFDEVAEAHLIQPTFITEYPAEVSPLAR Unmodified 3597.8607 0.86066614 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 2 3 3 2 3 55.127 53.651 3;4;5 2.4216E-43 26743 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 207.12 202.68 5295900000 499020000 514650000 397060000 0 0 0 661010000 743680000 667720000 0 0 0 281700000 303980000 315780000 0 0 0 317190000 302570000 291590000 0 0 0 10655 449 10371 199215;199216;199217;199218;199219;199220;199221;199222;199223;199224;199225;199226;199227;199228;199229;199230;199231;199232;199233;199234;199235;199236;199237;199238;199239;199240;199241;199242;199243;199244;199245;199246;199247;199248 123089;123090;123091;123092;123093;123094;123095;123096;123097;123098;123099;123100;123101;123102;123103;123104;123105;123106;123107;123108;123109;123110 123102 21 IVTEIFEEVAEAHLIQPTFITEYPAEVSPLAR Unmodified 3611.8763 0.87631621 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 3 2 2 2 2 2 2 2 55.3 53.831 3;4 2.0261E-44 26756 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 224.27 214.64 4597500000 334880000 301780000 306650000 1532900 1327400 0 417190000 309530000 334220000 0 0 0 401750000 361880000 348140000 0 0 0 526270000 511110000 441300000 0 0 0 10656 448 10372 199249;199250;199251;199252;199253;199254;199255;199256;199257;199258;199259;199260;199261;199262;199263;199264;199265;199266;199267;199268;199269;199270;199271;199272;199273;199274;199275 123111;123112;123113;123114;123115;123116;123117;123118;123119;123120;123121;123122;123123;123124;123125;123126;123127;123128;123129;123130;123131;123132;123133;123134 123114 24 IVTFDGDR Unmodified 921.4556 0.45559579 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 19.752 20.388 2 0.062308 7938 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 57.177 44.821 19803000 0 0 0 0 0 0 0 0 0 0 0 0 4871400 5906900 0 0 0 0 0 9024600 0 0 0 0 10657 1218 10373 199276;199277;199278;199279 123135;123136 123135 2 IVTFDGDREEAFAGEAITLVLTDEIDISR Unmodified 3194.5983 0.59830345 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.6 54.165 3 5.8638E-32 26712 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 200 199.13 597400000 44801000 50083000 40157000 0 1647300 0 48456000 0 0 0 0 0 50697000 50505000 44102000 0 0 0 82850000 95741000 88361000 0 0 0 10658 1218 10374 199280;199281;199282;199283;199284;199285;199286;199287;199288;199289;199290 123137;123138;123139;123140;123141;123142;123143 123138 7 IVTGIEEQR Unmodified 1043.5611 0.56112349 1261 P25536 yhdE Maf-like protein YhdE yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 16.834 17.348 2 0.00021236 5979 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.49 90.686 133570000 24999000 26522000 0 0 0 0 2348100 0 13431000 2825500 0 4026500 0 0 20517000 0 0 0 1849900 0 36005000 1043900 0 0 10659 1261 10375 199291;199292;199293;199294;199295;199296;199297;199298;199299;199300;199301 123144;123145;123146;123147 123145 4 IVTGVTASQALLDEAVR Unmodified 1741.9574 0.95741349 959 P0AFP6 ybgI Putative GTP cyclohydrolase 1 type 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 1 2 2 2 44.038 42.556 2;3 5.3851E-50 20004 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 284.32 265.51 2745800000 442590000 460330000 372190000 2941100 6453800 5250100 191250000 171280000 155060000 0 0 0 161550000 155630000 156670000 3368400 0 0 148620000 157600000 155020000 0 0 0 10660 959 10376 199302;199303;199304;199305;199306;199307;199308;199309;199310;199311;199312;199313;199314;199315;199316;199317;199318;199319;199320;199321;199322;199323;199324;199325;199326;199327;199328;199329;199330;199331 123148;123149;123150;123151;123152;123153;123154;123155;123156;123157;123158;123159;123160;123161;123162;123163;123164;123165;123166;123167;123168;123169;123170;123171;123172;123173 123168 26 IVTIQNPYSLLNR Unmodified 1529.8566 0.85657723 556 P0A9T4 tas Protein tas yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.417 42.981 2 1.1318E-08 21323 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 157.95 151.97 184500000 11513000 14403000 12449000 0 0 0 18269000 17102000 15248000 1230700 1016200 1008500 10371000 11434000 9149800 4801500 2301600 2680400 16438000 15086000 15800000 1723100 0 2474100 10661 556 10377 199332;199333;199334;199335;199336;199337;199338;199339;199340;199341;199342;199343;199344;199345;199346;199347;199348;199349;199350;199351 123174;123175;123176;123177;123178;123179;123180;123181;123182;123183;123184;123185 123175 12 IVTLDIPGKPWDTPQLAAELER Unmodified 2461.3217 0.32167508 435 P0A8I8 rlmH Ribosomal RNA large subunit methyltransferase H yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.7 49.358 3 3.8854E-11 24321 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.26 124.87 340460000 33253000 31173000 22781000 0 0 0 25381000 20941000 20203000 0 0 0 26229000 23594000 27203000 0 0 0 36844000 39046000 33811000 0 0 0 10662 435 10378 199352;199353;199354;199355;199356;199357;199358;199359;199360;199361;199362;199363 123186;123187;123188;123189;123190;123191;123192 123189 7 IVTPGTISDEALLQER Unmodified 1740.9258 0.92577901 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.368 38.615 2 2.3193E-10 18659 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 182.08 157.7 296290000 22709000 24270000 16731000 1037900 1036000 975080 26925000 20796000 19503000 2128100 0 0 18052000 21265000 19141000 0 0 0 34378000 38292000 29056000 0 0 0 10663 1230 10379 199364;199365;199366;199367;199368;199369;199370;199371;199372;199373;199374;199375;199376;199377;199378;199379 123193;123194;123195;123196;123197;123198;123199;123200;123201;123202;123203;123204 123198 12 IVTTLGPATDR Unmodified 1142.6295 0.62953741 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.855 21.903 2 3.3193E-10 9262 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 185.81 171.81 3772100000 188160000 182480000 147670000 0 0 0 469430000 449640000 490980000 0 0 0 356520000 340980000 300730000 0 0 0 294670000 298740000 252080000 0 0 0 10664 1184 10380 199380;199381;199382;199383;199384;199385;199386;199387;199388;199389;199390;199391 123205;123206;123207 123205 3 IVTTLGPATDRDNNLEK Unmodified 1855.964 0.96395543 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 21.732 21.617 2;3 3.6268E-31 9105 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 283.82 270.02 7299600000 432590000 398890000 362450000 8514100 9578800 12585000 771040000 780790000 757130000 22310000 21234000 13323000 651610000 697720000 622080000 7171500 5036900 5123600 545390000 550080000 582830000 9458200 16123000 16493000 10665 1184 10381 199392;199393;199394;199395;199396;199397;199398;199399;199400;199401;199402;199403;199404;199405;199406;199407;199408;199409;199410;199411;199412;199413;199414;199415;199416;199417;199418;199419;199420;199421;199422;199423;199424;199425;199426;199427;199428;199429;199430;199431;199432;199433;199434;199435;199436 123208;123209;123210;123211;123212;123213;123214;123215;123216;123217;123218;123219;123220;123221;123222;123223;123224;123225;123226;123227;123228;123229;123230;123231;123232;123233;123234;123235;123236;123237;123238;123239;123240;123241;123242;123243 123217 36 IVTTPAYMLAQNIAEAASGIDK Unmodified 2276.1722 0.17223365 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 2 2 2 2 2 2 2 55.113 53.644 2;3 2.1612E-28 26595 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 143.93 140.5 759850000 56257000 55740000 73740000 0 0 1281500 77262000 74550000 71412000 0 0 0 55236000 62049000 58465000 0 0 0 54137000 55041000 64681000 0 0 0 10666 681 10382 199437;199438;199439;199440;199441;199442;199443;199444;199445;199446;199447;199448;199449;199450;199451;199452;199453;199454;199455;199456;199457;199458;199459 123244;123245;123246;123247;123248;123249;123250;123251;123252;123253;123254;123255;123256 123247 13 IVTYEWGEYLK Unmodified 1399.7024 0.702368 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 1 1 1 1 1 1 43.841 42.313 2 4.1046E-05 20604 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.11 119.06 4442600000 1434900000 1332100000 1259100000 0 0 0 50478000 49149000 56552000 0 0 0 23194000 18368000 18743000 0 0 0 71817000 67838000 60355000 0 0 0 10667 1219 10383 199460;199461;199462;199463;199464;199465;199466;199467;199468;199469;199470;199471;199472;199473 123257;123258;123259;123260;123261;123262;123263;123264;123265;123266;123267;123268;123269 123261 13 IVTYEWGEYLKR Unmodified 1555.8035 0.80347903 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 36.113 34.634 3 0.036084 12178 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 35.774 31.714 35647000 7666100 8938500 10545000 2987800 3316500 2193300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10668 1219 10384 199474;199475;199476;199477;199478;199479 123270;123271;123272 123270 2 IVVDCANGATYHIAPNVLR Unmodified 2082.068 0.068043346 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 33.361 32.302 3 4.1369E-14 15369 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 142.01 138.51 303000000 34115000 37032000 28973000 0 0 0 0 0 0 0 0 0 30912000 25745000 23034000 0 960680 785100 37387000 43884000 40169000 0 0 0 10669 1360 10385 199480;199481;199482;199483;199484;199485;199486;199487;199488;199489;199490;199491;199492 123273;123274;123275;123276;123277;123278;123279;123280;123281;123282;123283 123276 11 IVVDKEHYEVIAGVNIPMLVETLMAR Unmodified 2938.566 0.56602122 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 2 2 2 2 2 1 2 2 3 1 1 1 3 2 3 2 1 2 55.173 53.816 3;4 6.298E-11 21694 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 130.01 128.83 1063500000 12938000 12437000 9494100 0 12124000 9299200 60059000 58246000 60470000 160400000 150260000 33255000 46077000 50095000 54063000 29299000 32675000 60358000 41791000 36946000 50894000 29910000 25588000 26785000 10670 1745 10386 199493;199494;199495;199496;199497;199498;199499;199500;199501;199502;199503;199504;199505;199506;199507;199508;199509;199510;199511;199512;199513;199514;199515;199516;199517;199518;199519;199520;199521;199522;199523;199524;199525;199526;199527;199528;199529;199530;199531 123284;123285;123286;123287;123288;123289;123290;123291;123292;123293;123294;123295 123289 12 IVVEAAR Unmodified 756.44939 0.4493882 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 3 2 1 1 1 3 3 3 1 1 3 2 3 1 1 13.694 14.426 2 0.0007365 4383 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.21 65.835 23027000000 771500000 799540000 617900000 6004200 0 5345500 3937600000 3640400000 3559600000 15422000 15379000 17750000 1667600000 1624000000 1518600000 7524600 11035000 0 1745700000 1603300000 1453800000 3868600 4599100 0 10671 1079 10387 199532;199533;199534;199535;199536;199537;199538;199539;199540;199541;199542;199543;199544;199545;199546;199547;199548;199549;199550;199551;199552;199553;199554;199555;199556;199557;199558;199559;199560;199561;199562;199563;199564;199565;199566;199567;199568;199569;199570 123296;123297;123298;123299;123300;123301;123302;123303;123304;123305;123306;123307;123308;123309;123310;123311;123312;123313;123314 123298 17 IVVEAFDDPDVK Unmodified 1345.6765 0.67654718 842 P0AE91 creA Protein CreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.927 33.428 2 3.0382E-06 16055 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.98 131.09 390560000 47789000 47185000 43794000 3289700 4259700 3539300 30630000 28226000 27696000 7506300 7317200 4929800 15743000 16442000 17342000 2825000 1169600 1289700 19637000 24815000 23251000 3787300 4810400 3283000 10672 842 10388 199571;199572;199573;199574;199575;199576;199577;199578;199579;199580;199581;199582;199583;199584;199585;199586;199587;199588;199589;199590;199591;199592;199593;199594 123315;123316;123317;123318;123319;123320;123321;123322;123323;123324;123325;123326;123327;123328;123329;123330;123331;123332;123333 123329 18 IVVELPGIQDTAR Unmodified 1409.7878 0.78782897 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.928 40.216 2 0.00014331 16357 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 104.79 98.192 292580000 10150000 9742400 12191000 3745200 3732300 3402400 18986000 20068000 18115000 10054000 9629900 8054300 18607000 15888000 12812000 3034000 1673900 0 32513000 33358000 27989000 6603900 5894800 6332900 10673 997 10389 199595;199596;199597;199598;199599;199600;199601;199602;199603;199604;199605;199606;199607;199608;199609;199610;199611;199612;199613;199614;199615;199616;199617 123334;123335;123336;123337;123338;123339;123340 123334 6 IVVFNNSVLGFVAMEMK Unmodified 1896.9842 0.98416229 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.248 53.75 2 0.043098 26632 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 62.162 56.668 133920000 19074000 21163000 18013000 0 8626800 0 17953000 17543000 21157000 0 0 0 0 0 0 0 0 0 4761000 5630800 0 0 0 0 10674 147 10390 199618;199619;199620;199621;199622;199623;199624;199625;199626 123341;123342;123343 123342 0 IVVFSVSNHEEDVVTALK Unmodified 1985.047 0.046956778 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 40.439 38.676 2;3 1.0629E-36 18920 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 239.75 213.73 1145600000 151470000 129120000 117880000 1398200 1852100 1786100 135210000 116230000 127860000 2415300 2052800 2893200 43526000 50518000 40984000 0 0 0 74422000 74580000 71390000 0 0 0 10675 908 10391 199627;199628;199629;199630;199631;199632;199633;199634;199635;199636;199637;199638;199639;199640;199641;199642;199643;199644;199645;199646;199647;199648;199649;199650;199651;199652;199653;199654;199655;199656 123344;123345;123346;123347;123348;123349;123350;123351;123352;123353;123354;123355 123349 11 IVVFSVSNHEEDVVTALKR Unmodified 2141.1481 0.14806781 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 3 2 2 2 1 2 1 2 1 1 1 2 1 1 1 35.905 34.306 3;4 6.2908E-10 13602 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 119.23 104.62 473530000 50891000 45300000 38654000 15001000 12471000 12706000 43157000 52929000 48889000 15757000 16308000 13799000 7842300 12658000 10379000 4278200 1523600 1404300 13878000 35718000 14277000 0 3371700 2342400 10676 908 10392 199657;199658;199659;199660;199661;199662;199663;199664;199665;199666;199667;199668;199669;199670;199671;199672;199673;199674;199675;199676;199677;199678;199679;199680;199681;199682;199683;199684;199685;199686;199687;199688;199689;199690;199691;199692;199693;199694;199695 123356;123357;123358;123359;123360;123361;123362;123363;123364;123365;123366;123367;123368;123369;123370;123371 123357 16 IVVLDAGR Unmodified 841.50215 0.50215205 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 2 2 1 1 2 2 2 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 22.892 22.235 2 0.00011779 9572 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.09 81.974 1410700000 21193000 23552000 15442000 6735300 15020000 10418000 109010000 117920000 128840000 50023000 52712000 51705000 118370000 94467000 98191000 16640000 15154000 14646000 0 161470000 161590000 43988000 42028000 41566000 10677 1718 10393 199696;199697;199698;199699;199700;199701;199702;199703;199704;199705;199706;199707;199708;199709;199710;199711;199712;199713;199714;199715;199716;199717;199718;199719;199720;199721;199722;199723;199724;199725;199726;199727;199728;199729;199730 123372;123373;123374;123375;123376;123377;123378;123379;123380;123381;123382;123383;123384 123380 13 IVVNYAK Unmodified 805.46979 0.46978929 1001 P0AGA2 secY Protein translocase subunit SecY yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 3 3 3 3 3 3 2 2 2 3 2 2 3 3 3 17.108 17.48 1;2 0.0066314 4699 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.669 69.67 2416500000 20021000 17676000 19002000 7276200 6112200 7006600 82869000 78401000 70658000 187930000 186330000 159740000 88674000 70954000 65870000 297110000 269810000 250430000 105160000 94082000 113790000 84930000 69349000 63298000 10678 1001 10394 199731;199732;199733;199734;199735;199736;199737;199738;199739;199740;199741;199742;199743;199744;199745;199746;199747;199748;199749;199750;199751;199752;199753;199754;199755;199756;199757;199758;199759;199760;199761;199762;199763;199764;199765;199766;199767;199768;199769;199770;199771;199772;199773;199774;199775;199776;199777;199778;199779;199780;199781;199782;199783;199784;199785;199786;199787 123385;123386;123387;123388;123389;123390;123391;123392;123393;123394;123395;123396;123397;123398;123399;123400;123401;123402;123403;123404;123405 123386 11 IVVSPAAGTIVK Unmodified 1153.7071 0.70705945 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.537 26.347 2 5.0991E-05 12357 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.55 70.006 884540000 34988000 48008000 39697000 9036200 10089000 8708300 86415000 80037000 80506000 32205000 34152000 24691000 54503000 45864000 46103000 6067200 3459400 4034800 66440000 66857000 55802000 13653000 16261000 16966000 10679 210 10395 199788;199789;199790;199791;199792;199793;199794;199795;199796;199797;199798;199799;199800;199801;199802;199803;199804;199805;199806;199807;199808;199809;199810;199811 123406;123407;123408;123409;123410;123411;123412;123413;123414;123415;123416;123417;123418;123419;123420;123421;123422;123423 123410 17 IVVTDADDALR Unmodified 1186.6194 0.61936665 1769 P75777 ybhG UPF0194 membrane protein YbhG yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.495 25.981 2 0.00029805 12191 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.15 98.291 93124000 0 0 0 2519700 2090200 2342400 15922000 19229000 13710000 7796300 7328000 7934200 0 1482300 0 0 0 0 5889700 6879400 0 0 0 0 10680 1769 10396 199812;199813;199814;199815;199816;199817;199818;199819;199820;199821;199822;199823 123424;123425;123426;123427;123428;123429 123427 4 IVVTLGER Unmodified 885.52837 0.5283668 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 1 2 1 1 1 1 1 1 23.888 23.034 2 0.0019385 10476 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.32 46.959 280360000 29408000 21666000 20438000 532780 412670 0 41582000 0 40411000 0 0 0 18515000 17571000 25587000 0 0 0 22250000 22514000 19471000 0 0 0 10681 164 10397 199824;199825;199826;199827;199828;199829;199830;199831;199832;199833;199834;199835;199836;199837;199838;199839;199840 123430;123431;123432;123433;123434;123435;123436;123437;123438;123439 123431 1 IVYDPSVISYEQLLQVFWENHDPAQGMR Unmodified 3333.6128 0.61284807 309 P0A744 msrA Peptide methionine sulfoxide reductase MsrA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 1 2 1 55.385 53.919 3;4 1.3313E-41 26539 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 219.38 217.62 1323000000 213410000 147140000 163670000 12828000 20615000 13921000 87841000 81732000 84250000 50803000 37653000 42964000 64310000 60116000 58413000 0 0 0 55407000 59403000 45753000 10662000 12145000 0 10682 309 10398 199841;199842;199843;199844;199845;199846;199847;199848;199849;199850;199851;199852;199853;199854;199855;199856;199857;199858;199859;199860;199861;199862;199863;199864;199865;199866;199867;199868;199869;199870;199871;199872;199873;199874;199875;199876 123440;123441;123442;123443;123444;123445;123446;123447;123448 123446 9 IVYQDLTR Unmodified 1006.5447 0.54474515 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.146 22.349 2 0.00023486 9642 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 150.84 117.1 3653300000 180160000 167190000 193310000 0 0 0 417220000 404480000 416230000 4807400 0 0 339780000 317100000 321390000 0 0 0 287650000 291080000 312890000 0 0 0 10683 1487 10399 199877;199878;199879;199880;199881;199882;199883;199884;199885;199886;199887;199888;199889 123449;123450;123451;123452;123453;123454;123455;123456;123457;123458;123459;123460 123453 12 IVYSPMDALK Unmodified 1135.5947 0.59473181 1239 P24192 hypD Hydrogenase isoenzymes formation protein HypD yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.283 34.699 2 0.090951 17098 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 44.349 23.049 116580000 1696100 0 0 0 0 0 17217000 18868000 16423000 3524200 2392800 2787100 9093300 11633000 8584600 1197500 0 624860 6110800 9236000 7191300 0 0 0 10684 1239 10400 199890;199891;199892;199893;199894;199895;199896;199897;199898;199899;199900;199901;199902;199903;199904 123461;123462 123461 0 IVYVSCNPATLAR Unmodified 1462.7602 0.76023401 1612 P55135 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 30.434 29.517 2 0.040399 10154 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 51.276 47.122 8343700 0 0 0 0 0 0 0 0 0 1567900 0 0 0 0 0 2365900 1746500 1316300 0 0 0 1347100 0 0 10685 1612 10401 199905;199906;199907;199908;199909 123463;123464 123463 0 IWASMTAMER Unmodified 1194.5525 0.55254942 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 32.465 31.293 2 2.2238E-05 14661 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 148.52 138.61 98426000 36735000 30661000 31029000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10686 1141 10402 199910;199911;199912 123465;123466 123466 2 IWDFPFDESK Unmodified 1282.587 0.58700389 1266 P25666 htrL Protein HtrL yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.956 48.52 2 0.00061 19409 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 91.867 89.712 79382000 4699700 4091300 2980600 0 0 520490 8325800 7822300 7897700 3511300 3794100 3560800 5177700 0 2878200 0 0 0 6031500 7014800 9971800 0 0 1103900 10687 1266 10403 199913;199914;199915;199916;199917;199918;199919;199920;199921;199922;199923;199924;199925;199926;199927;199928 123467;123468;123469 123469 3 IWDSTDALELK Unmodified 1289.6503 0.65033243 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 3 1 1 1 2 1 3 2 1 1 1 1 1 1 1 2 2 3 2 39.964 38.226 2;3 3.0756E-05 15028 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 152.28 136.07 26617000000 1341400000 1254300000 1153200000 1859300000 1975100000 1890900000 1122800000 1018600000 1027400000 306200000 292560000 266320000 870520000 796820000 777400000 114950000 81949000 83916000 1432300000 1464800000 1460700000 2162600000 2053200000 1809700000 10688 542 10404 199929;199930;199931;199932;199933;199934;199935;199936;199937;199938;199939;199940;199941;199942;199943;199944;199945;199946;199947;199948;199949;199950;199951;199952;199953;199954;199955;199956;199957;199958;199959;199960;199961;199962;199963;199964;199965 123470;123471;123472;123473;123474;123475;123476;123477;123478;123479;123480;123481;123482;123483;123484;123485;123486;123487;123488;123489;123490;123491;123492;123493;123494;123495;123496;123497;123498;123499;123500;123501;123502;123503;123504;123505;123506;123507;123508;123509;123510;123511;123512;123513;123514 123475 44 IWDSTDALELKEVPER Unmodified 1899.9578 0.95780742 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 1 1 1 1 2 2 2 37.134 35.373 2;3;4 8.4716E-31 12402 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 273.15 262.25 4043900000 0 0 0 861230000 935830000 790370000 0 0 0 31790000 31418000 30131000 0 0 0 13632000 7624400 8462600 0 0 0 476490000 444550000 412350000 10689 542 10405 199966;199967;199968;199969;199970;199971;199972;199973;199974;199975;199976;199977;199978;199979;199980;199981;199982;199983;199984;199985;199986;199987;199988 123515;123516;123517;123518;123519;123520;123521;123522;123523;123524;123525;123526;123527;123528;123529;123530;123531;123532;123533;123534;123535;123536;123537;123538;123539;123540;123541;123542 123536 28 IWEEGSDEVLVK Unmodified 1402.698 0.6980109 622 P0AB14 yccJ Uncharacterized protein YccJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 33.362 31.852 2 1.1917E-06 15633 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 150.08 146.67 3510800000 437330000 413950000 394550000 0 0 0 608750000 568750000 561040000 0 1241700 0 116950000 109100000 103730000 0 0 0 96879000 2443900 96132000 0 0 0 10690 622 10406 199989;199990;199991;199992;199993;199994;199995;199996;199997;199998;199999;200000;200001;200002 123543;123544;123545;123546;123547;123548;123549;123550;123551;123552;123553;123554;123555;123556;123557;123558 123548 16 IWGLNAFDPSQGNLLLPR Unmodified 2010.0687 0.068695273 1504 P38051 menF Isochorismate synthase MenF yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 55.135 53.65 2 4.5838E-05 26739 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.892 76.163 46692000 8682700 7564600 0 0 0 0 4584700 4515900 5223300 0 0 0 5208300 5998900 0 0 0 0 0 0 4913600 0 0 0 10691 1504 10407 200003;200004;200005;200006;200007;200008;200009;200010 123559 123559 0 IWGVTGDSLNGLSDSLNR Unmodified 1902.9436 0.94355434 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1 1 1 1 1 1 1 48.43 46.893 2;3 4.5117E-22 22867 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 229.56 217.64 256500000 43499000 52272000 42477000 10157000 5896300 7847600 28802000 30701000 24604000 3588200 3180900 3476800 0 0 0 0 0 0 0 0 0 0 0 0 10692 147 10408 200011;200012;200013;200014;200015;200016;200017;200018;200019;200020;200021;200022;200023 123560;123561;123562;123563;123564;123565;123566 123566 7 IWHDGDDLYHIIFDQQTK Unmodified 2243.0647 0.064732107 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.579 46.172 4 7.1749E-10 22658 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.96 121.4 256800000 23293000 23650000 20655000 0 0 0 20644000 17502000 17517000 0 0 0 19012000 15269000 13409000 0 0 0 29918000 27284000 28649000 0 0 0 10693 1203 10409 200024;200025;200026;200027;200028;200029;200030;200031;200032;200033;200034;200035 123567;123568;123569;123570;123571;123572;123573;123574;123575;123576;123577 123572 11 IWIEDQSTNCGENAR Unmodified 1791.7846 0.78461086 1436 P34209 ydcF Protein YdcF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.392 25.259 2 1.9085E-45 11206 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 275.84 275.84 144890000 30494000 25518000 22256000 571890 488560 561340 8326500 8222900 9045400 0 0 436650 5808700 4888800 5356100 0 0 0 10300000 5683800 6928200 0 0 0 10694 1436 10410 200036;200037;200038;200039;200040;200041;200042;200043;200044;200045;200046;200047;200048;200049;200050;200051 123578;123579;123580;123581;123582;123583;123584;123585;123586 123586 9 IWIENLSK Unmodified 1001.5546 0.55458155 1351 P30863 dkgB 2,5-diketo-D-gluconic acid reductase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.064 32.616 2 0.0015526 15437 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.9 94.316 171500000 23717000 26113000 23483000 0 0 0 14094000 11153000 11241000 0 0 0 9697700 8544400 7384800 0 0 0 12519000 11559000 11999000 0 0 0 10695 1351 10411 200052;200053;200054;200055;200056;200057;200058;200059;200060;200061;200062;200063 123587;123588;123589;123590;123591;123592 123589 6 IWLDPQK Unmodified 898.49125 0.49125301 1478 P37637 mdtF Multidrug resistance protein MdtF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 28.278 26.467 2 0.028578 12297 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 68.485 59.014 27527000 0 0 0 0 0 0 6401700 9185900 6648300 3530000 0 1760900 0 0 0 0 0 0 0 0 0 0 0 0 10696 1478 10412 200064;200065;200066;200067;200068 123593;123594 123594 2 IWLSPQGVVDLHGFATNGLYYK Unmodified 2477.2743 0.27433095 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 52.529 51.053 3 0.11833 20513 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 34.346 31.19 26492000 0 0 0 0 0 0 0 0 0 9076900 5487900 6906000 0 0 0 0 0 0 0 0 0 2503800 2516900 0 10697 188 10413 200069;200070;200071;200072;200073 123595 123595 0 IWMNPNELNK Unmodified 1257.6176 0.61759251 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.827 29.433 2 0.00012563 13828 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.12 123.82 333020000 14732000 11723000 9591200 4739400 3779700 3897600 24440000 20751000 19879000 9621000 13678000 12386000 16914000 22633000 20281000 2538100 1690500 1873900 32341000 30345000 31418000 7748300 7769100 8245000 10698 1365 10414 200074;200075;200076;200077;200078;200079;200080;200081;200082;200083;200084;200085;200086;200087;200088;200089;200090;200091;200092;200093;200094;200095;200096;200097 123596;123597;123598;123599;123600;123601;123602;123603;123604;123605;123606;123607 123602 10 IWPEYSPSSLQVDDNHR Unmodified 2041.9494 0.949368 1474 P37613 panM PanD maturation factor yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 34.867 33.524 3 1.1646E-10 16408 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.39 131.66 336400000 28854000 29562000 24636000 0 0 0 27158000 25835000 26677000 0 0 0 26989000 19155000 27215000 0 0 923760 32683000 36982000 29734000 0 0 0 10699 1474 10415 200098;200099;200100;200101;200102;200103;200104;200105;200106;200107;200108;200109;200110 123608;123609;123610;123611;123612;123613;123614;123615;123616;123617 123608 10 IWYIADAFR Unmodified 1153.592 0.59202969 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.7 48.318 2 4.1259E-05 23485 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.27 146.91 1024300000 232930000 206250000 223830000 1970200 1919000 1186700 5168100 5163100 4563100 0 0 0 31460000 23241000 24210000 0 0 0 71183000 88402000 86789000 4777600 5778000 5499900 10700 65 10416 200111;200112;200113;200114;200115;200116;200117;200118;200119;200120;200121;200122;200123;200124;200125;200126;200127;200128 123618;123619;123620;123621;123622;123623;123624;123625;123626 123622 9 IWYISPK Unmodified 905.50109 0.50108942 110 P05458 ptrA Protease 3 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 32.261 30.869 2 0.0086175 14905 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.643 70.795 56396000 7825500 5307700 0 0 0 0 7397000 7930700 11171000 0 0 0 3372100 2591800 0 0 0 0 6395500 0 4404100 0 0 0 10701 110 10417 200129;200130;200131;200132;200133;200134;200135;200136;200137 123627;123628;123629 123628 3 IYAAFKK Unmodified 839.49052 0.49052473 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.404 13.801 2 0.016531 3500 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 84.025 64.178 3895400000 0 0 0 587810000 605480000 634070000 160310000 0 0 42445000 34820000 38189000 0 0 0 10106000 4506000 4565800 0 0 0 638910000 604280000 529880000 10702 939 10418 200138;200139;200140;200141;200142;200143;200144;200145;200146;200147;200148;200149;200150 123630;123631;123632;123633;123634;123635;123636;123637;123638;123639;123640 123634 11 IYADKLEQEK Unmodified 1235.6398 0.63976774 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 13.45 14.396 2 3.559E-12 4504 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 187.22 124.67 191230000 0 33009000 0 0 0 0 0 0 0 0 0 0 24108000 21601000 24453000 0 0 0 47406000 40655000 0 0 0 0 10703 937 10419 200151;200152;200153;200154;200155;200156;200157;200158;200159;200160 123641;123642;123643;123644;123645;123646;123647;123648 123643 8 IYALPEMSEEDGYK Unmodified 1643.7389 0.73888944 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.808 36.134 2 1.3462E-05 17342 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.91 100.24 492330000 41828000 35387000 35433000 0 0 0 32332000 36535000 34204000 0 0 0 44442000 43743000 43575000 0 0 0 48891000 49658000 46299000 0 0 0 10704 558 10420 200161;200162;200163;200164;200165;200166;200167;200168;200169;200170;200171;200172 123649;123650;123651;123652;123653;123654;123655;123656;123657;123658;123659 123657 3 IYAPVGTHETLLAYLVR Unmodified 1915.0567 0.056733603 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 3 3 3 47.926 46.52 2;3 5.7652E-15 22520 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 196.38 191.67 1734400000 74250000 72073000 68041000 33032000 37635000 35062000 50240000 58283000 47956000 76531000 66300000 65158000 55997000 63428000 46892000 26080000 27828000 41271000 142210000 169760000 181600000 99402000 96569000 98783000 10705 215 10421 200173;200174;200175;200176;200177;200178;200179;200180;200181;200182;200183;200184;200185;200186;200187;200188;200189;200190;200191;200192;200193;200194;200195;200196;200197;200198;200199;200200;200201;200202;200203;200204;200205;200206;200207;200208;200209;200210;200211;200212;200213;200214;200215;200216;200217;200218;200219;200220 123660;123661;123662;123663;123664;123665;123666;123667;123668;123669;123670;123671;123672;123673;123674;123675;123676;123677;123678;123679;123680;123681;123682;123683;123684;123685;123686;123687;123688;123689;123690;123691 123679 30 IYAYLSR Unmodified 884.4756 0.47560295 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.098 22.367 2 5.5039E-06 9564 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 193.7 112.7 756860000 50558000 50740000 51525000 517820 0 0 107760000 110240000 101960000 0 0 0 44836000 45924000 46263000 0 0 0 50965000 46726000 48855000 0 0 0 10706 145 10422 200221;200222;200223;200224;200225;200226;200227;200228;200229;200230;200231;200232;200233 123692;123693;123694;123695;123696;123697;123698;123699;123700;123701;123702;123703 123698 12 IYCESFLGEEHR Unmodified 1538.6824 0.68237762 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 24.605 23.637 2;3 1.0494E-16 10013 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 205.14 198.45 700930000 0 64202000 0 0 0 0 63454000 66743000 62676000 0 0 0 79669000 66645000 64136000 0 0 0 72561000 79631000 81211000 0 0 0 10707 1450 10423 200234;200235;200236;200237;200238;200239;200240;200241;200242;200243;200244;200245;200246;200247;200248;200249;200250;200251 123704;123705;123706;123707;123708;123709;123710;123711;123712;123713;123714;123715;123716;123717;123718;123719;123720 123718 16 IYCESFLGEEHRK Unmodified 1666.7773 0.77734063 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 4 3 3 17.767 18.429 2;3;4 1.0049E-08 6486 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 201.84 196.53 1559900000 92842000 79398000 71847000 0 0 0 171520000 174280000 164670000 0 0 0 136070000 113980000 119950000 0 0 0 163550000 142350000 129420000 0 0 0 10708 1450 10424 200252;200253;200254;200255;200256;200257;200258;200259;200260;200261;200262;200263;200264;200265;200266;200267;200268;200269;200270;200271;200272;200273;200274;200275;200276;200277;200278;200279;200280;200281;200282;200283;200284;200285;200286;200287;200288 123721;123722;123723;123724;123725;123726;123727;123728;123729;123730;123731;123732;123733;123734;123735;123736;123737;123738;123739;123740;123741;123742;123743;123744;123745;123746;123747;123748;123749;123750;123751;123752;123753;123754;123755 123749 35 IYDEAELEMALAWADK Unmodified 1866.871 0.87096625 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By MS/MS 1 54.735 53.282 2 0.00040779 26464 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 70.622 64.588 5189600 5189600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10709 1758 10425 200289 123756 123756 0 IYDFFMNYGK Unmodified 1296.5849 0.5848954 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 47.686 46.246 2 1.5449E-06 22894 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.77 163.77 621900000 0 0 0 0 0 0 43310000 52640000 47138000 0 0 0 61263000 54438000 53318000 0 0 0 98664000 101110000 110020000 0 0 0 10710 1124 10426 200290;200291;200292;200293;200294;200295;200296;200297;200298 123757;123758;123759;123760;123761;123762;123763;123764;123765 123758 7 IYDLVEAITGFR Unmodified 1395.7398 0.73981614 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 54.896 53.438 2 1.115E-11 26280 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 214.58 201.32 1177900000 0 41913000 46352000 11117000 9201500 9765900 75846000 74024000 73998000 52220000 38355000 41719000 89466000 85939000 77074000 0 0 0 133570000 121260000 113690000 29962000 23332000 29091000 10711 1426 10427 200299;200300;200301;200302;200303;200304;200305;200306;200307;200308;200309;200310;200311;200312;200313;200314;200315;200316;200317;200318;200319 123766;123767;123768;123769;123770;123771;123772;123773;123774;123775;123776;123777;123778;123779 123774 14 IYDQMLRPEWPALGSVQYTIQK Unmodified 2635.3468 0.34684397 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 49.661 48.353 3 2.3889E-10 23586 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 125.04 119.42 135380000 15140000 19442000 16830000 0 0 0 0 0 0 0 0 0 13452000 12816000 13711000 0 0 0 0 21924000 22066000 0 0 0 10712 1221 10428 200320;200321;200322;200323;200324;200325;200326;200327 123780;123781;123782;123783;123784;123785;123786 123780 7 IYDSDSILSMHHEPR Unmodified 1798.8308 0.83083277 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 1 2 2 2 2 2 2 3 2 2 1 3 3 3 2 2 2 23.989 23.038 2;3;4 7.5702E-27 9945 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 227.31 216.7 1212200000 229750000 190220000 167970000 1964500 1759800 1265300 53128000 46536000 48798000 6975800 6621700 4449100 47751000 47579000 45792000 2516700 0 0 99717000 94083000 100520000 5278300 4806700 4769100 10713 1302 10429 200328;200329;200330;200331;200332;200333;200334;200335;200336;200337;200338;200339;200340;200341;200342;200343;200344;200345;200346;200347;200348;200349;200350;200351;200352;200353;200354;200355;200356;200357;200358;200359;200360;200361;200362;200363;200364;200365;200366;200367;200368;200369;200370;200371;200372;200373;200374 123787;123788;123789;123790;123791;123792;123793;123794;123795;123796;123797;123798;123799;123800;123801;123802;123803;123804;123805;123806;123807;123808;123809 123801 22 IYDWYQAR Unmodified 1113.5243 0.52434406 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 31.018 29.514 2 4.9837E-08 14051 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 167.25 142.33 749200000 0 229610000 198730000 0 0 0 161280000 159590000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10714 401 10430 200375;200376;200377;200378;200379;200380 123810;123811;123812;123813;123814;123815 123812 6 IYELLDK Unmodified 892.49058 0.49058431 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 28.356 27.012 2 0.072543 12494 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.917 54.7 478530000 57391000 56499000 49003000 0 0 0 32326000 27473000 29739000 1299900 0 0 32292000 30698000 33088000 0 0 0 44007000 47334000 37382000 0 0 0 10715 1210 10431 200381;200382;200383;200384;200385;200386;200387;200388;200389;200390;200391;200392;200393 123816;123817;123818;123819;123820;123821 123816 6 IYELLDKTDIDDVTQLAK Unmodified 2092.094 0.09396655 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 46.7 45.26 2;3 4.8166E-55 22019 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 281.07 272.47 2332500000 226500000 221720000 211310000 25737000 27959000 23503000 104810000 118100000 117570000 46984000 44135000 40900000 126710000 124980000 121980000 15750000 16075000 17056000 190940000 213790000 195870000 28776000 44879000 26470000 10716 1210 10432 200394;200395;200396;200397;200398;200399;200400;200401;200402;200403;200404;200405;200406;200407;200408;200409;200410;200411;200412;200413;200414;200415;200416;200417;200418;200419;200420;200421;200422;200423;200424;200425;200426;200427;200428;200429;200430;200431;200432;200433;200434;200435;200436;200437 123822;123823;123824;123825;123826;123827;123828;123829;123830;123831;123832;123833;123834;123835;123836;123837;123838;123839;123840;123841;123842;123843;123844;123845;123846;123847;123848;123849;123850;123851;123852;123853;123854;123855;123856;123857;123858;123859;123860 123844 39 IYGDTIPGHQADK Unmodified 1413.6888 0.6888432 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 15.01 15.75 2 3.9736E-06 5220 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 129.88 119.87 113800000 25661000 22719000 17706000 0 0 0 10669000 9515900 8774000 0 0 0 0 0 0 0 0 0 5583700 6127800 7049100 0 0 0 10717 1258 10433 200438;200439;200440;200441;200442;200443;200444;200445;200446 123861;123862;123863;123864;123865;123866;123867 123867 7 IYGDTIPGHQADKR Unmodified 1569.79 0.78995423 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 1 1 3 2 3 3 3 12.592 13.392 2;3;4 8.9566E-08 4050 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.45 127.24 895260000 169380000 129850000 142390000 0 0 0 121590000 88120000 87688000 0 3686700 0 3765200 24676000 13458000 0 0 0 36531000 39608000 34513000 0 0 0 10718 1258 10434 200447;200448;200449;200450;200451;200452;200453;200454;200455;200456;200457;200458;200459;200460;200461;200462;200463;200464;200465;200466;200467;200468;200469;200470;200471;200472;200473;200474;200475;200476;200477;200478;200479;200480 123868;123869;123870;123871;123872;123873;123874;123875;123876;123877;123878;123879;123880;123881;123882 123879 14 IYGITAK Unmodified 764.44324 0.44324019 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.891 19.409 2 0.03333 7244 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 66.087 6.5229 945270000 106350000 91870000 72261000 0 0 0 88512000 90537000 81023000 0 0 0 58232000 50183000 53029000 0 0 0 83165000 85167000 84132000 805240 0 0 10719 1298 10435 200481;200482;200483;200484;200485;200486;200487;200488;200489;200490;200491;200492;200493 123883 123883 1 IYGTAWADK Unmodified 1023.5025 0.50254598 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.917 23.05 2 0.00069751 10414 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.56 39.299 1012300000 119120000 106500000 0 0 0 0 103930000 0 113870000 0 0 0 110570000 102340000 106990000 0 0 0 0 131330000 117630000 0 0 0 10720 445 10436 200494;200495;200496;200497;200498;200499;200500;200501;200502;200503;200504;200505 123884;123885;123886;123887;123888;123889;123890;123891;123892;123893;123894;123895 123884 12 IYGTAWADKK Unmodified 1151.5975 0.597509 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 2 2 2 16.578 17.222 2;3 0.00024749 6301 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130.56 130.56 1453200000 143430000 45083000 107230000 3310300 3231900 2899400 141970000 144590000 139500000 4941100 3560500 0 123270000 98279000 76582000 0 0 1293000 141150000 133590000 139250000 0 0 0 10721 445 10437 200506;200507;200508;200509;200510;200511;200512;200513;200514;200515;200516;200517;200518;200519;200520;200521;200522;200523;200524;200525;200526;200527;200528;200529;200530;200531;200532;200533;200534;200535;200536;200537;200538;200539 123896;123897;123898;123899;123900;123901;123902;123903;123904;123905;123906;123907;123908;123909;123910;123911;123912;123913;123914;123915;123916;123917;123918;123919;123920;123921 123898 26 IYGVLER Unmodified 848.4756 0.47560295 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.253 23.347 2 0.0020767 10548 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.69 65.501 3798300000 544990000 511970000 468730000 13651000 12873000 13149000 200160000 185340000 181600000 38944000 34372000 37238000 182230000 195520000 189020000 14734000 9135700 10943000 305270000 309460000 281600000 18262000 18807000 20294000 10722 375 10438 200540;200541;200542;200543;200544;200545;200546;200547;200548;200549;200550;200551;200552;200553;200554;200555;200556;200557;200558;200559;200560;200561;200562;200563 123922;123923;123924;123925;123926;123927;123928;123929;123930;123931;123932;123933;123934;123935;123936;123937;123938 123929 16 IYHSGETEDASWFLR Unmodified 1809.8322 0.83221298 1573 P45524 yheT Putative esterase YheT yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 36.112 33.774 3 0.04511 13175 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 38.028 26.414 9891000 0 0 0 0 0 524190 0 0 0 3030100 2546600 3790000 0 0 0 0 0 0 0 0 0 0 0 0 10723 1573 10439 200564;200565;200566;200567 123939 123939 1 IYIQNVDHCNTHSPFDPAIAPVR Unmodified 2663.2915 0.29145435 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 33.399 31.842 3;4 2.0989E-53 15111 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 250.83 239.19 5111800000 383880000 376200000 350640000 1522200 2119100 1124600 375610000 395820000 352680000 7153500 5788800 0 331140000 339110000 312490000 0 0 4281600 579970000 602660000 660410000 10977000 9483300 8700700 10724 29 10440 200568;200569;200570;200571;200572;200573;200574;200575;200576;200577;200578;200579;200580;200581;200582;200583;200584;200585;200586;200587;200588;200589;200590;200591;200592;200593;200594;200595;200596;200597;200598;200599;200600;200601;200602;200603 123940;123941;123942;123943;123944;123945;123946;123947;123948;123949;123950;123951;123952;123953;123954;123955;123956;123957;123958;123959;123960;123961;123962;123963;123964 123948 25 IYLEQGR Unmodified 877.46577 0.46576654 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.175 16.928 2 0.00045564 5839 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.67 104.91 1554000000 71790000 75355000 70049000 0 0 0 138350000 156180000 147530000 0 0 0 137860000 115170000 114830000 1221100 0 0 168760000 183420000 173490000 0 0 0 10725 1489 10441 200604;200605;200606;200607;200608;200609;200610;200611;200612;200613;200614;200615;200616 123965;123966;123967;123968;123969;123970;123971;123972;123973;123974;123975 123972 11 IYLHAFLDGR Unmodified 1203.64 0.64004252 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 1 1 2 2 2 33.04 31.625 2;3 9.4344E-07 15214 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 142.98 136.68 2081200000 97309000 87838000 89136000 797120 891180 953660 286810000 280320000 282340000 0 0 0 195560000 155190000 116670000 0 0 814810 172880000 162280000 151450000 0 0 0 10726 1487 10442 200617;200618;200619;200620;200621;200622;200623;200624;200625;200626;200627;200628;200629;200630;200631;200632;200633;200634;200635;200636;200637;200638;200639;200640;200641;200642;200643 123976;123977;123978;123979;123980;123981;123982;123983;123984;123985;123986;123987 123978 12 IYLVDQNDR Unmodified 1134.5669 0.56693715 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.028 23.063 2 0.00014849 8127 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 131.06 121.47 43878000 0 0 0 0 0 0 0 0 0 7565000 7988100 6705400 0 0 0 0 3321300 2064400 0 0 0 7133800 4113000 4987400 10727 1940 10443 200644;200645;200646;200647;200648;200649;200650;200651 123988;123989;123990;123991;123992;123993;123994 123991 7 IYLVGGAVR Unmodified 946.56 0.56000128 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.182 26.97 2 0.00026055 11735 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 121.29 110.88 135250000 14778000 16239000 14761000 0 0 0 11934000 8547700 10072000 0 0 0 7372300 7715700 8408400 0 0 0 11219000 13046000 11157000 0 0 0 10728 134 10444 200652;200653;200654;200655;200656;200657;200658;200659;200660;200661;200662;200663 123995;123996;123997;123998;123999;124000;124001;124002 124002 8 IYNEISK Unmodified 865.45453 0.45453316 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.561 14.154 2 0.0010319 4325 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.37 95.594 1803900000 177840000 186950000 180880000 2080700 0 2740000 164780000 168410000 144260000 4429200 3323400 3655100 120930000 121420000 94536000 2868600 2625500 2035500 155840000 147320000 113660000 0 1522500 1755300 10729 451 10445 200664;200665;200666;200667;200668;200669;200670;200671;200672;200673;200674;200675;200676;200677;200678;200679;200680;200681;200682;200683;200684;200685 124003;124004;124005;124006;124007;124008;124009;124010;124011;124012;124013;124014;124015;124016 124012 14 IYNILTPEQK Unmodified 1217.6656 0.66558856 1938 P77754 spy Spheroplast protein Y yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.794 30.198 2 1.6026E-06 14546 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.15 144.06 879650000 82382000 96026000 81734000 0 2479800 2614300 82616000 88557000 71251000 9889000 5487100 5036800 48642000 47245000 50513000 0 0 0 61954000 60930000 69395000 4181300 4268000 4444700 10730 1938 10446 200686;200687;200688;200689;200690;200691;200692;200693;200694;200695;200696;200697;200698;200699;200700;200701;200702;200703;200704;200705 124017;124018;124019;124020;124021;124022 124017 5 IYPGQVLR Unmodified 944.54435 0.54435122 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 24.316 23.341 2 0.00090921 10069 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.01 106.29 7291100000 1283200000 1331800000 1350700000 154230000 153960000 164790000 647520000 673040000 617830000 95200000 84552000 85851000 78790000 73562000 69936000 10080000 6018500 7284000 123090000 124240000 116200000 14647000 12055000 12507000 10731 783 10447 200706;200707;200708;200709;200710;200711;200712;200713;200714;200715;200716;200717;200718;200719;200720;200721;200722;200723;200724;200725;200726;200727;200728;200729;200730;200731;200732;200733;200734 124023;124024;124025;124026;124027;124028;124029;124030;124031;124032;124033;124034;124035;124036;124037;124038;124039;124040;124041;124042;124043;124044;124045;124046;124047;124048;124049 124041 27 IYPIAQCNNAFIFPGIGLGVIASGASR Unmodified 2805.4636 0.46360506 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 3 3 2 2 2 2 3 2 55.249 53.771 2;3 3.1701E-16 26422 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 203.89 191.34 646010000 41516000 39203000 32360000 0 0 0 48461000 47975000 40503000 0 0 0 57848000 58033000 43574000 0 0 0 73741000 76481000 86318000 0 0 0 10732 1283 10448 200735;200736;200737;200738;200739;200740;200741;200742;200743;200744;200745;200746;200747;200748;200749;200750;200751;200752;200753;200754;200755;200756;200757;200758;200759;200760;200761;200762;200763 124050;124051;124052;124053;124054;124055;124056;124057;124058;124059;124060;124061 124057 12 IYPWVCGR Unmodified 1049.5117 0.51167088 606 P0AAQ2 yajD Uncharacterized protein YajD yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 31.873 30.638 2 0.00091658 14522 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.7 113.34 160460000 6793800 6836100 8849000 0 0 0 20840000 20662000 19704000 0 0 0 9952300 8932600 9930100 0 0 409430 16438000 16499000 14611000 0 0 0 10733 606 10449 200764;200765;200766;200767;200768;200769;200770;200771;200772;200773;200774;200775;200776 124062;124063;124064;124065;124066;124067;124068 124065 5 IYQEFEGDNATWWNFDPR Unmodified 2286.997 0.99704647 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 4 4 4 2 2 2 7 8 6 2 2 2 2 5 3 53.358 52.432 2;3 7.5368E-45 20741 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 250.52 232.93 5974600000 3048600 4351200 0 0 0 0 4853500 9466900 2638800 685610000 701820000 714090000 10240000 10255000 8997600 1085700000 769770000 732270000 12508000 9258500 11700000 372870000 431130000 394040000 10734 1616 10450 200777;200778;200779;200780;200781;200782;200783;200784;200785;200786;200787;200788;200789;200790;200791;200792;200793;200794;200795;200796;200797;200798;200799;200800;200801;200802;200803;200804;200805;200806;200807;200808;200809;200810;200811;200812;200813;200814;200815;200816;200817;200818;200819;200820;200821;200822;200823;200824;200825;200826;200827;200828;200829;200830;200831;200832;200833;200834;200835;200836;200837 124069;124070;124071;124072;124073;124074;124075;124076;124077;124078;124079;124080;124081;124082;124083;124084;124085;124086;124087;124088;124089;124090;124091;124092;124093;124094;124095;124096;124097;124098;124099;124100 124092 30 IYQFEGGLLHTK Unmodified 1404.7402 0.74015049 246 P0A6H8 clsA Cardiolipin synthase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.437 29.007 3 0.1358 13679 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 24.399 20.927 104200000 5284300 7515000 5827100 2019600 1681200 2039500 11520000 12794000 11965000 0 0 0 6442500 6496800 4317400 0 0 0 7052400 8642900 8292200 2312800 0 0 10735 246 10451 200838;200839;200840;200841;200842;200843;200844;200845;200846;200847;200848;200849;200850;200851;200852;200853 124101 124101 1 IYQGLNPGGALVLSEK Unmodified 1657.9039 0.90392136 1847 P76290 cmoA tRNA (cmo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.149 38.484 2 7.474E-10 19021 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 134.99 126.5 413630000 43016000 31887000 29719000 0 0 0 34577000 32676000 33748000 0 0 0 31187000 27323000 25438000 0 0 0 41279000 41694000 41087000 0 0 0 10736 1847 10452 200854;200855;200856;200857;200858;200859;200860;200861;200862;200863;200864;200865 124102;124103;124104;124105;124106;124107;124108;124109;124110;124111;124112 124104 11 IYQLKPNPAVLICR Unmodified 1683.9494 0.94943176 195 P08997 aceB Malate synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 34.702 33.234 2;3 1.3534E-08 16014 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.06 150.06 6228200000 1592500000 1444400000 1264500000 2136600 2110600 2532500 416790000 360570000 393830000 0 0 0 98647000 96965000 89607000 0 0 0 152620000 159090000 151880000 0 0 0 10737 195 10453 200866;200867;200868;200869;200870;200871;200872;200873;200874;200875;200876;200877;200878;200879;200880;200881;200882;200883;200884;200885;200886;200887;200888;200889;200890;200891;200892 124113;124114;124115;124116;124117;124118;124119;124120;124121;124122;124123;124124;124125;124126;124127;124128;124129;124130;124131;124132;124133;124134;124135;124136 124125 24 IYQRPFGGQSK Unmodified 1279.6673 0.6673199 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 12.921 13.537 2;3 2.2923E-19 3911 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 261.16 244.32 1228700000 57053000 47893000 53859000 42823000 37618000 36321000 46630000 49401000 59063000 26201000 22847000 21463000 85357000 75021000 66542000 12313000 6091100 11220000 130350000 132840000 115380000 24170000 38427000 29834000 10738 698 10454 200893;200894;200895;200896;200897;200898;200899;200900;200901;200902;200903;200904;200905;200906;200907;200908;200909;200910;200911;200912;200913;200914;200915;200916;200917;200918;200919;200920;200921;200922;200923;200924;200925;200926;200927;200928;200929;200930;200931;200932;200933;200934;200935;200936;200937;200938;200939 124137;124138;124139;124140;124141;124142;124143;124144;124145;124146;124147;124148;124149;124150;124151;124152;124153;124154;124155;124156;124157;124158;124159;124160;124161;124162;124163;124164;124165;124166;124167;124168;124169;124170;124171;124172;124173 124147 37 IYQSTTNAHINTGDGVGMAIR Unmodified 2218.0801 0.080064595 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 1 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 26.28 25.068 2;3 4.8454E-63 11376 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 350.86 344.23 2039300000 126840000 90545000 90603000 43141000 39124000 43936000 77629000 66882000 74976000 19541000 25033000 24885000 136250000 127920000 131350000 4707800 7336800 7417800 260680000 225660000 251810000 49264000 55484000 58263000 10739 698 10455 200940;200941;200942;200943;200944;200945;200946;200947;200948;200949;200950;200951;200952;200953;200954;200955;200956;200957;200958;200959;200960;200961;200962;200963;200964;200965;200966;200967;200968;200969;200970;200971;200972;200973;200974;200975;200976;200977;200978;200979;200980;200981;200982 124174;124175;124176;124177;124178;124179;124180;124181;124182;124183;124184;124185;124186;124187;124188;124189;124190;124191;124192;124193;124194;124195;124196;124197;124198;124199;124200;124201;124202;124203;124204 124190 30 IYSDVLR Unmodified 864.47052 0.47051757 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.414 21.985 2 0.0015703 9265 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.66 65.319 4178900000 203210000 206090000 191390000 892370 1009200 729550 408580000 385800000 373650000 2683100 2156700 1356700 358710000 323830000 317160000 0 0 0 424010000 487810000 489840000 0 0 0 10740 337 10456 200983;200984;200985;200986;200987;200988;200989;200990;200991;200992;200993;200994;200995;200996;200997;200998;200999;201000 124205;124206;124207;124208;124209;124210;124211;124212;124213;124214;124215;124216 124208 12 IYTFGPTFR Unmodified 1100.5655 0.56548059 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.941 35.345 2 0.098014 16955 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 49.418 40.886 1269500000 147530000 134440000 121150000 1057700 1108900 956350 79501000 74571000 82443000 0 0 0 77806000 73729000 84051000 0 0 644410 126290000 124860000 138450000 0 879200 0 10741 444 10457 201001;201002;201003;201004;201005;201006;201007;201008;201009;201010;201011;201012;201013;201014;201015;201016;201017 124217 124217 0 IYTLTLAPSLDSATITPQIYPEGK Unmodified 2591.3734 0.37343587 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.964 52.524 2;3 5.2746E-10 25965 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 183.75 174.93 753730000 77168000 69787000 66735000 0 0 0 81954000 103390000 97414000 0 0 0 43290000 44882000 39670000 0 0 0 35826000 52650000 40957000 0 0 0 10742 145 10458 201018;201019;201020;201021;201022;201023;201024;201025;201026;201027;201028;201029;201030;201031;201032;201033;201034;201035;201036;201037;201038;201039;201040;201041 124218;124219;124220;124221;124222;124223;124224;124225;124226;124227;124228;124229;124230;124231;124232;124233;124234;124235;124236;124237;124238 124222 21 IYTNAEELVGKPFR Unmodified 1635.8621 0.86205654 1730 P69411 rcsF Outer membrane lipoprotein RcsF yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.714 31.166 3 5.1194E-05 12359 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 93.623 92.877 180720000 9962200 0 6978500 5672300 4172000 4055300 10922000 10456000 8298800 6860200 8500900 8074500 9270300 8357000 8370000 0 0 1265600 16106000 20359000 16388000 4143200 7588200 4921600 10743 1730 10459 201042;201043;201044;201045;201046;201047;201048;201049;201050;201051;201052;201053;201054;201055;201056;201057;201058;201059;201060;201061;201062 124239;124240;124241;124242;124243;124244;124245;124246;124247;124248;124249 124239 11 IYVGNVPIGDGAPIAVQSMTNTR Unmodified 2372.2158 0.2158298 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 47.983 46.565 2;3 3.2757E-28 22711 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 182.57 177.68 503030000 40305000 39859000 33559000 0 0 0 38326000 41014000 46033000 0 0 0 42698000 35813000 35821000 0 0 0 51475000 50117000 45347000 0 0 2658900 10744 1649 10460 201063;201064;201065;201066;201067;201068;201069;201070;201071;201072;201073;201074;201075;201076;201077;201078;201079;201080;201081;201082;201083;201084;201085;201086;201087 124250;124251;124252;124253;124254;124255;124256;124257;124258;124259;124260;124261;124262 124257 11 IYYITADSYAAAK Unmodified 1448.7187 0.71874635 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.578 31.244 2 5.276E-07 14654 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.89 141.59 1199800000 89287000 85769000 84003000 2729500 2480800 2378200 107260000 106600000 106690000 0 0 1511100 88033000 79954000 83654000 0 870120 0 119820000 122790000 115980000 0 0 0 10745 295 10461 201088;201089;201090;201091;201092;201093;201094;201095;201096;201097;201098;201099;201100;201101;201102;201103;201104 124263;124264;124265;124266;124267;124268;124269;124270;124271;124272;124273;124274 124270 12 IYYNATAPLMGK Unmodified 1340.6799 0.67985842 1232 P23930 lnt Apolipoprotein N-acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 33.236 31.796 2 0.050697 14385 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 61.161 54.858 22989000 2781400 0 0 0 0 0 2642300 0 1905100 0 0 0 2526500 2258300 1874100 0 0 0 2151300 3319800 3530700 0 0 0 10746 1232 10462 201105;201106;201107;201108;201109;201110;201111;201112;201113 124275 124275 0 KAAAMANK Unmodified 803.43236 0.43235793 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 4.5125 5.4864 2 0.0028022 874 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 111.04 78.107 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10747 697 10463 201114;201115;201116 124276;124277;124278 124276 3 KAADGIMNWLEV Unmodified 1345.67 0.67002202 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 53.082 52.125 2 2.2168E-10 25738 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 135.43 121.84 205120000 64943000 57053000 53701000 0 0 536120 1580400 18639000 0 0 0 0 0 0 0 4010900 2694200 1960100 0 0 0 0 0 0 10748 219 10464 201117;201118;201119;201120;201121;201122;201123;201124;201125;201126;201127;201128;201129;201130;201131;201132 124279;124280;124281;124282;124283;124284;124285;124286;124287;124288;124289 124281 11 KAAITAEIR Unmodified 971.57638 0.57637963 68 P02413 rplO 50S ribosomal protein L15 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.934 13.536 2 0.00020969 2911 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 129.42 103.04 2935300000 290740000 330690000 352370000 24516000 29275000 22257000 123740000 124810000 125180000 30658000 32784000 33253000 158690000 185310000 170640000 43272000 21100000 19849000 240520000 244830000 215490000 39247000 39838000 36275000 10749 68 10465 201133;201134;201135;201136;201137;201138;201139;201140;201141;201142;201143;201144;201145;201146;201147;201148;201149;201150;201151;201152;201153;201154;201155;201156 124290;124291;124292;124293;124294;124295;124296;124297;124298;124299;124300;124301;124302;124303;124304;124305;124306;124307;124308;124309;124310 124302 21 KAAPCIIFIDEIDAVGR Unmodified 1886.9924 0.99241879 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 2 2 48.2 46.859 2;3 1.3983E-10 18591 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 134.85 129.85 188670000 0 0 0 8607300 10811000 10461000 6231000 6258500 7418800 13281000 5134900 24446000 4047300 0 3443500 5964000 5423400 4866300 6863900 6729700 5734800 19699000 19914000 13340000 10750 595 10466 201157;201158;201159;201160;201161;201162;201163;201164;201165;201166;201167;201168;201169;201170;201171;201172;201173;201174;201175;201176;201177;201178;201179;201180;201181;201182;201183 124311;124312;124313;124314;124315 124313 5 KAAQDAK Unmodified 730.39735 0.39735263 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2.07 2.9653 2 0.078287 320 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.76 30.091 11071000 0 0 0 0 0 0 0 0 0 0 0 0 846090 0 596160 0 0 0 2865300 2964700 3798900 0 0 0 10751 412 10467 201184;201185;201186;201187;201188 124316;124317;124318 124317 3 KAAQEIVNSGK Unmodified 1143.6248 0.62478638 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 10.611 11.39 2 0.00017154 2716 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 135.16 108.47 38077000 0 0 0 0 0 0 13053000 11080000 9277300 0 0 0 0 0 0 0 0 0 0 0 4667900 0 0 0 10752 145 10468 201189;201190;201191;201192 124319 124319 1 KAAVEAAIAR Unmodified 998.58728 0.58727866 1921 P77611 rsxC Electron transport complex subunit RsxC yes no 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.388 13 2 0.043732 3051 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 55.549 32.809 57009000 0 2761300 0 0 0 0 4063700 0 0 1574700 1420100 1718800 5507000 5487800 4166800 0 0 0 9764300 7035300 6299100 2791300 2542900 1876500 10753 1921 10469 201193;201194;201195;201196;201197;201198;201199;201200;201201;201202;201203;201204;201205;201206 124320 124320 1 KACEEVGFVSR Unmodified 1280.6183 0.6183208 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 2 1 1 1 2 1 1 14.731 15.475 2;3 1.3049E-05 5300 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.71 123.28 413930000 56706000 53582000 47559000 0 0 0 22615000 48019000 40060000 0 0 0 18879000 18778000 16569000 0 0 0 51613000 18977000 20568000 0 0 0 10754 1237 10470 201207;201208;201209;201210;201211;201212;201213;201214;201215;201216;201217;201218;201219;201220;201221;201222;201223;201224 124321;124322;124323;124324;124325;124326 124321 3 KADEIQIYK Unmodified 1106.5972 0.59717465 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 2 2 1 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 15.443 16.067 2;3 1.0152E-15 5351 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 229.61 210.52 5212100000 722000000 677290000 763950000 728700 743620 713990 352870000 356020000 318820000 1925900 2025600 1520400 310860000 288100000 311370000 2262500 1387200 881010 374760000 328990000 387870000 2225300 2757400 2084300 10755 508 10471 201225;201226;201227;201228;201229;201230;201231;201232;201233;201234;201235;201236;201237;201238;201239;201240;201241;201242;201243;201244;201245;201246;201247;201248;201249;201250;201251;201252;201253;201254;201255;201256;201257;201258 124327;124328;124329;124330;124331;124332;124333;124334;124335;124336;124337;124338;124339;124340;124341;124342;124343;124344;124345;124346;124347;124348 124337 22 KADENDIRLPGEVAFFIAK Unmodified 2132.1266 0.12660408 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 2 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 45.088 42.985 4 0.063396 17169 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 34.649 33.381 15614000 0 0 0 0 1021000 0 0 0 0 4511900 4193500 3940400 0 0 0 0 0 0 0 0 0 0 0 1947500 10756 78 10472 201259;201260;201261;201262;201263 124349 124349 1 KADLYDK Unmodified 851.43888 0.43888309 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.582 11.398 2 0.0029693 2668 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.5 61.717 1723800000 114350000 104450000 91070000 0 0 0 159690000 142060000 125340000 0 0 0 168500000 167220000 135260000 0 0 0 189990000 172130000 153790000 0 0 0 10757 86 10473 201264;201265;201266;201267;201268;201269;201270;201271;201272;201273;201274;201275 124350;124351;124352 124350 3 KADYIWFNGEMVR Unmodified 1627.7817 0.78169773 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 1 1 2 1 1 1 37.662 36.012 2;3 4.0569E-05 17303 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.48 113.87 130550000 26454000 28631000 20940000 0 0 0 7566500 8962900 5767500 0 0 0 4266300 4273800 6188400 0 0 0 6297700 6077500 5127100 0 0 0 10758 636 10474 201276;201277;201278;201279;201280;201281;201282;201283;201284;201285;201286;201287;201288;201289;201290;201291;201292 124353;124354;124355;124356 124356 4 KAEDTLALLR Unmodified 1128.6503 0.65027285 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 1 1 1 2 2 2 2 1 1 25.599 24.571 2;3 2.8923E-07 11410 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 177.97 159.99 868070000 57361000 68981000 57646000 0 360760 0 56728000 58103000 51052000 0 2053400 0 75392000 75004000 60418000 3667900 6455700 6387600 100760000 88566000 81946000 5459000 6498100 5236600 10759 1445 10475 201293;201294;201295;201296;201297;201298;201299;201300;201301;201302;201303;201304;201305;201306;201307;201308;201309;201310;201311;201312;201313;201314;201315;201316;201317;201318;201319;201320;201321;201322;201323;201324;201325 124357;124358;124359;124360;124361;124362;124363;124364;124365;124366;124367;124368;124369;124370;124371;124372;124373;124374;124375;124376;124377;124378;124379;124380;124381;124382;124383 124360 27 KAEEEAR Unmodified 831.40865 0.4086456 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.0635 7.6173 2 0.0029977 787 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 113.1 57.661 338600000 47856000 41893000 39320000 0 0 0 220790 2257700 290720 3072300 1816400 2546800 36874000 27292000 31623000 2319200 6140100 2311500 30392000 28936000 30406000 789720 989290 1252800 10760 297 10476 201326;201327;201328;201329;201330;201331;201332;201333;201334;201335;201336;201337;201338;201339;201340;201341;201342;201343;201344;201345;201346;201347;201348;201349 124384;124385;124386;124387;124388;124389;124390;124391;124392;124393;124394 124388 11 KAEEHISSSHGDVDYAQASAELAK Unmodified 2542.1936 0.19357403 236 P0A6E6 atpC ATP synthase epsilon chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 1 2 3 3 3 3 3 3 3 3 3 1 3 3 3 3 2 3 17.653 18.121 3;4;5 8.5775E-61 6659 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 266.38 259.81 1671200000 29179000 26676000 27586000 8331500 3806200 6392800 226180000 185110000 200950000 23626000 21670000 20022000 132120000 104530000 150570000 1423300 0 0 142490000 150940000 158430000 14656000 17511000 19051000 10761 236 10477 201350;201351;201352;201353;201354;201355;201356;201357;201358;201359;201360;201361;201362;201363;201364;201365;201366;201367;201368;201369;201370;201371;201372;201373;201374;201375;201376;201377;201378;201379;201380;201381;201382;201383;201384;201385;201386;201387;201388;201389;201390;201391;201392;201393;201394;201395;201396;201397;201398;201399;201400;201401;201402;201403;201404;201405 124395;124396;124397;124398;124399;124400;124401;124402;124403;124404;124405;124406;124407;124408;124409;124410;124411;124412;124413;124414;124415;124416;124417;124418;124419;124420;124421;124422;124423;124424;124425;124426;124427;124428;124429 124406 35 KAEIDEEQLAAAPVIIR Unmodified 1865.0258 0.025827405 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 2 2 2 2 35.54 34.019 2;3 7.4932E-104 16774 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 373.87 362.01 1881900000 143680000 138550000 112980000 0 0 0 132070000 154690000 118570000 0 0 0 166770000 152510000 161940000 0 0 0 194470000 199080000 206560000 0 0 0 10762 1073 10478 201406;201407;201408;201409;201410;201411;201412;201413;201414;201415;201416;201417;201418;201419;201420;201421;201422;201423;201424;201425;201426;201427;201428;201429;201430;201431;201432 124430;124431;124432;124433;124434;124435;124436;124437;124438;124439;124440;124441;124442;124443;124444;124445;124446;124447;124448;124449;124450;124451;124452;124453 124431 24 KAELESAALNAR Unmodified 1271.6834 0.68336389 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 3 2 1 2 2 2 1 2 2 2 14.915 15.677 2;3 1.289E-30 5346 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 300.35 263.16 3992300000 495440000 459700000 403350000 3091500 1397100 2429700 298630000 310500000 282030000 1834000 0 0 271120000 230190000 186140000 0 0 1750600 369160000 341600000 333930000 0 0 0 10763 183 10479 201433;201434;201435;201436;201437;201438;201439;201440;201441;201442;201443;201444;201445;201446;201447;201448;201449;201450;201451;201452;201453;201454;201455;201456;201457;201458;201459;201460;201461;201462;201463;201464 124454;124455;124456;124457;124458;124459;124460;124461;124462;124463;124464;124465;124466;124467;124468;124469;124470;124471;124472;124473;124474 124454 21 KAELNPQR Unmodified 954.52468 0.52467841 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 10.334 11.087 2 0.00027863 2565 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 151.56 137.79 698830000 19569000 19421000 17101000 0 0 0 31633000 64115000 53246000 0 0 0 78991000 70287000 94244000 4860300 0 0 88428000 83260000 73675000 0 0 0 10764 1890 10480 201465;201466;201467;201468;201469;201470;201471;201472;201473;201474;201475;201476;201477 124475;124476;124477;124478;124479;124480;124481;124482;124483 124479 9 KAEQWATGLK Unmodified 1130.6084 0.60840804 74 P02931 ompF Outer membrane protein F yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 1 1 1 16.431 17.046 2;3 2.348E-05 4648 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 150.1 137.58 199270000 8134900 12242000 12779000 2296000 2193200 2644300 18898000 21971000 23076000 6945200 6177200 5657500 8608200 7724100 14596000 0 0 0 13566000 10762000 9275300 3491800 4253500 3981200 10765 74 10481 201478;201479;201480;201481;201482;201483;201484;201485;201486;201487;201488;201489;201490;201491;201492;201493;201494;201495;201496;201497;201498;201499;201500;201501;201502;201503;201504;201505 124484;124485;124486 124484 3 KAEQYLLENETTK Unmodified 1565.7937 0.7937022 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1 2 2 2 2 2 2 2 2 2 2 17.518 18.206 2;3 6.8832E-160 6632 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 471.09 456.89 3475300000 366040000 185350000 291480000 1352600 1283300 1422600 429190000 340520000 384000000 0 0 0 134820000 125750000 271010000 0 0 0 287660000 323530000 331940000 0 0 0 10766 31 10482 201506;201507;201508;201509;201510;201511;201512;201513;201514;201515;201516;201517;201518;201519;201520;201521;201522;201523;201524;201525;201526;201527;201528;201529;201530;201531;201532;201533;201534 124487;124488;124489;124490;124491;124492;124493;124494;124495;124496;124497;124498;124499;124500;124501;124502;124503;124504;124505;124506;124507;124508;124509;124510 124495 24 KAFAYGLKPIVVINK Unmodified 1660.0076 0.0075985659 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.213 28.689 3 0.013541 13283 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 44.44 44.44 145170000 8474300 9689000 9703600 0 0 0 7163800 9297600 10300000 742990 1481100 0 10560000 11048000 12442000 0 0 0 17595000 18609000 18066000 0 0 0 10767 1388 10483 201535;201536;201537;201538;201539;201540;201541;201542;201543;201544;201545;201546;201547;201548 124511;124512 124512 2 KAFDLGITHFDLANNYGPPPGSAEENFGR Unmodified 3133.4894 0.48936212 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 45.121 43.676 4 7.8927E-06 21400 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.259 71.775 98789000 22691000 26145000 17866000 0 0 0 14100000 11390000 0 0 0 0 0 0 2939800 0 0 0 3656800 0 0 0 0 0 10768 1958 10484 201549;201550;201551;201552;201553;201554;201555 124513;124514;124515 124513 3 KAFIDFLQNTVMR Unmodified 1581.8337 0.8337333 791 P0ADK0 yiaF Uncharacterized protein YiaF yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 1 1 2 1 2 1 2 1 1 1 1 1 46.744 44.957 2;3 1.8897E-05 18406 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 98.942 96.449 86122000 0 0 0 1931000 487750 0 6363500 13582000 6522100 15788000 8631300 13719000 0 0 0 0 0 0 3115700 4110100 3524600 4771700 0 3576000 10769 791 10485 201556;201557;201558;201559;201560;201561;201562;201563;201564;201565;201566;201567;201568;201569;201570;201571;201572 124516;124517;124518;124519 124516 4 KAFQDMEAALR Unmodified 1278.6391 0.63905624 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.685 23.679 3 0.16294 10399 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 19.144 15.381 105770000 0 7143900 7254200 0 0 0 9057700 10197000 8615200 3221700 2674000 2074000 4927000 5567500 5079000 0 964900 938230 10227000 10935000 11608000 2895300 0 2386800 10770 1197 10486 201573;201574;201575;201576;201577;201578;201579;201580;201581;201582;201583;201584;201585;201586;201587;201588;201589;201590 124520 124520 1 KAFYPGTLPFPLLHVDTGWK Unmodified 2286.2201 0.22011054 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 50.484 49.105 3;4 5.2213E-05 24260 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 78.975 78.231 805920000 47437000 45762000 44784000 7189800 0 2223200 58716000 59804000 61964000 0 0 0 47090000 50182000 50680000 0 0 0 106840000 109330000 108980000 0 0 4938600 10771 1169 10487 201591;201592;201593;201594;201595;201596;201597;201598;201599;201600;201601;201602;201603;201604;201605;201606;201607;201608;201609;201610;201611;201612;201613;201614;201615;201616;201617;201618 124521;124522;124523;124524;124525;124526;124527;124528;124529;124530 124522 9 KAGCSSIK Unmodified 849.43784 0.43783723 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 6.8975 7.5137 2 0.0011916 1376 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.25 56.641 628890000 68149000 80735000 64006000 874150 958900 1120200 17866000 15539000 16564000 2995800 2460200 1901100 51856000 50636000 53995000 651410 654550 614250 70038000 63236000 62027000 731950 648170 637090 10772 424 10488 201619;201620;201621;201622;201623;201624;201625;201626;201627;201628;201629;201630;201631;201632;201633;201634;201635;201636;201637;201638;201639;201640;201641;201642;201643 124531;124532;124533;124534;124535;124536;124537;124538;124539;124540;124541;124542;124543;124544 124541 14 KAGFVTR Unmodified 777.44972 0.44972255 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.901 11.482 2 0.043897 2773 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 65.777 51.791 926320000 0 132930000 127750000 7706500 8959300 7305800 0 46593000 43967000 14923000 20242000 16122000 57162000 51081000 48270000 10081000 9672900 8834900 94834000 92136000 93992000 11129000 11760000 10864000 10773 378 10489 201644;201645;201646;201647;201648;201649;201650;201651;201652;201653;201654;201655;201656;201657;201658;201659;201660;201661;201662;201663;201664;201665;201666 124545;124546;124547 124547 3 KAGGLTVSHLR Unmodified 1137.6618 0.66184059 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 11.681 12.564 3 0.066413 3505 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 37.968 31.665 104990000 10861000 0 0 754890 0 0 0 0 0 0 0 0 0 27335000 0 0 0 0 38620000 0 27423000 0 0 0 10774 1609 10490 201667;201668;201669;201670;201671 124548 124548 0 KAGIPLALNK Unmodified 1023.6441 0.64406526 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.904 19.469 2 1.3944E-08 6867 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 180.54 149.25 312780000 14223000 16304000 10857000 0 0 0 25456000 25321000 25147000 0 0 0 29347000 23878000 23740000 0 0 0 40152000 39973000 38388000 0 0 0 10775 1497 10491 201672;201673;201674;201675;201676;201677;201678;201679;201680;201681;201682;201683 124549;124550;124551;124552;124553;124554;124555;124556;124557;124558;124559;124560 124560 12 KAGLDPEQPPK Unmodified 1178.6295 0.62953741 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.835 12.712 3 0.00060383 3468 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 65.232 55.897 414520000 0 0 0 0 0 0 33240000 34125000 27426000 0 0 0 37975000 29788000 31311000 0 0 0 78621000 74470000 67557000 0 0 0 10776 993 10492 201684;201685;201686;201687;201688;201689;201690;201691;201692 124561;124562;124563;124564;124565;124566;124567;124568 124565 8 KAGNLIAK Unmodified 813.50724 0.50723743 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.787 11.419 2 0.00064105 2752 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.85 105.04 493320000 56078000 52134000 45419000 0 0 0 40617000 37912000 40196000 0 0 5703800 24735000 30219000 27452000 4531000 1985600 0 45278000 43164000 33669000 4226000 0 0 10777 787 10493 201693;201694;201695;201696;201697;201698;201699;201700;201701;201702;201703;201704;201705;201706;201707;201708 124569;124570;124571;124572;124573;124574;124575;124576;124577 124576 9 KAGNVAADGVIK Unmodified 1141.6455 0.64552182 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 1 3 3 3 3 3 3 3 3 3 2 3 3 3 3 3 2 2 3 12.415 13.006 2;3 1.1809E-13 2717 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 159.94 97.22 18391000000 1454200000 1270600000 1259600000 11354000 32329000 0 746140000 2148600000 2063600000 25279000 22176000 21988000 1619000000 1533300000 1613300000 10530000 11407000 12331000 1929000000 733180000 1820900000 16337000 14145000 21816000 10778 267 10494 201709;201710;201711;201712;201713;201714;201715;201716;201717;201718;201719;201720;201721;201722;201723;201724;201725;201726;201727;201728;201729;201730;201731;201732;201733;201734;201735;201736;201737;201738;201739;201740;201741;201742;201743;201744;201745;201746;201747;201748;201749;201750;201751;201752;201753;201754;201755;201756;201757;201758;201759;201760;201761;201762;201763;201764;201765;201766;201767;201768;201769;201770;201771;201772;201773 124578;124579;124580;124581;124582;124583;124584;124585;124586;124587;124588;124589;124590;124591;124592;124593;124594;124595;124596;124597;124598;124599;124600;124601;124602;124603;124604;124605 124600 28 KAGPTWTPTAK Unmodified 1156.6241 0.6240581 617 P0AAX8 ybiS Probable L,D-transpeptidase YbiS yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 12.972 13.851 2 0.00035565 4183 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.84 88.098 76219000 8902700 7845700 5854500 0 0 0 0 11832000 0 0 0 0 5813800 7660700 5179400 0 0 0 7045600 6989700 9094300 0 0 0 10779 617 10495 201774;201775;201776;201777;201778;201779;201780;201781;201782;201783 124606;124607 124606 2 KAGVPCVPGSDGPLGDDMDKNR Unmodified 2284.0576 0.057614593 1236 P24182 accC Biotin carboxylase yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.877 22.996 4 0.00010871 10053 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 77.287 76.132 235990000 20353000 15207000 14210000 1008500 951260 1240800 16465000 0 0 0 0 0 23499000 22693000 19097000 0 0 0 29864000 29016000 36668000 1782500 1556400 2379800 10780 1236 10496 201784;201785;201786;201787;201788;201789;201790;201791;201792;201793;201794;201795;201796;201797;201798;201799 124608;124609;124610 124608 3 KAGVPVLIDPK Unmodified 1135.6965 0.69649476 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 1 1 1 1 1 1 22.888 22.068 2;3 0.00042641 9686 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.171 83.068 421820000 24103000 28340000 24516000 0 0 0 53322000 52082000 45587000 8578700 7486000 3340300 27271000 21754000 21986000 0 0 0 37314000 29999000 36143000 0 0 0 10781 1880 10497 201800;201801;201802;201803;201804;201805;201806;201807;201808;201809;201810;201811;201812;201813;201814;201815;201816;201817;201818;201819;201820 124611;124612;124613;124614;124615;124616;124617;124618;124619;124620;124621;124622;124623;124624 124619 14 KAHEIAGEEFNLSSTK Unmodified 1759.8741 0.87407779 37 P00582 polA DNA polymerase I yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 2 2 2 2 2 1 2 2 2 2 2 17.769 18.368 3;4 0.0061239 5056 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 50.966 48.842 172500000 7080300 7353600 12087000 0 0 0 16334000 20315000 18012000 0 0 0 9695400 5637400 10090000 0 0 10639000 18149000 18505000 18607000 0 0 0 10782 37 10498 201821;201822;201823;201824;201825;201826;201827;201828;201829;201830;201831;201832;201833;201834;201835;201836;201837;201838;201839;201840;201841;201842;201843 124625;124626;124627 124625 2 KAHPQLAEEFTR Unmodified 1425.7365 0.7364621 1423 P33570 tktB Transketolase 2 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 14.041 14.8 2 0.040051 4700 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 49.5 41.892 32058000 8634100 5404000 6056700 0 0 0 3768100 3709300 4485500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10783 1423 10499 201844;201845;201846;201847;201848;201849 124628 124628 1 KAIDAAER Unmodified 872.47158 0.4715802 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 2 1 9.7412 10.521 2 4.7397E-05 2434 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 173.48 139.96 1949800000 571950000 543510000 527120000 0 0 0 0 0 0 0 0 0 17872000 19063000 12322000 0 0 0 76222000 87328000 94277000 0 0 183080 10784 1264 10500 201850;201851;201852;201853;201854;201855;201856;201857;201858;201859;201860 124629;124630;124631;124632;124633;124634;124635;124636;124637 124632 9 KAIEQDAK Unmodified 901.4869 0.48689592 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 6.9348 7.6674 2 2.888E-07 1474 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.75 112.64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10785 852 10501 201861;201862;201863 124638;124639;124640 124639 3 KAIESGK Unmodified 731.41775 0.41775372 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 4.3799 5.2681 2 0.047495 892 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 65.252 40.254 56891000 0 0 0 0 0 0 0 0 0 0 0 0 8616200 7636000 9093600 0 0 0 12203000 8695500 10646000 0 0 0 10786 1588 10502 201864;201865;201866;201867;201868;201869 124641;124642;124643;124644 124643 4 KAIGEAKDDDTADILTAASR Unmodified 2060.0386 0.038576936 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.099 22.374 3 2.1088E-23 9406 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.11 188.77 254120000 67234000 58292000 56192000 4841400 5822700 5061900 12856000 13714000 16755000 0 0 6466700 0 0 0 0 0 0 3363300 0 3518800 0 0 0 10787 677 10503 201870;201871;201872;201873;201874;201875;201876;201877;201878;201879;201880;201881 124645;124646;124647 124647 3 KAINVSDQVPAK Unmodified 1268.7089 0.70885036 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 1 2 2 1 1 2 2 2 13.104 13.967 2;3 4.5649E-08 4358 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 195.83 160.32 383710000 103830000 99508000 89333000 4897400 2112300 4665000 3417500 2699800 8727000 0 0 0 0 14191000 5292800 0 0 464370 14924000 15281000 14375000 0 0 0 10788 529 10504 201882;201883;201884;201885;201886;201887;201888;201889;201890;201891;201892;201893;201894;201895;201896;201897;201898;201899;201900;201901;201902;201903;201904;201905;201906 124648;124649;124650;124651;124652;124653;124654;124655;124656;124657;124658;124659;124660 124654 13 KAIPQAR Unmodified 782.47627 0.47627165 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 9.6717 10.246 2 0.15431 2236 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 49.669 37.285 20058000 1255700 1099500 0 0 0 0 0 0 0 6822600 5077800 0 0 0 0 0 0 0 1818000 2096000 1887900 0 0 0 10789 1788 10505 201907;201908;201909;201910;201911;201912;201913 124661 124661 1 KAISVTER Unmodified 902.51853 0.5185304 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.052 11.634 2 3.6912E-06 2367 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 182.09 68.983 901790000 0 0 40005000 46229000 38786000 38571000 57859000 45864000 50781000 67171000 43327000 48103000 32936000 30797000 30860000 16579000 21150000 16575000 61485000 49490000 42979000 35841000 44942000 41456000 10790 61 10506 201914;201915;201916;201917;201918;201919;201920;201921;201922;201923;201924;201925;201926;201927;201928;201929;201930;201931;201932;201933;201934;201935 124662;124663;124664;124665;124666;124667;124668;124669;124670;124671;124672;124673;124674;124675;124676 124673 15 KALDSYDK Unmodified 938.47091 0.4709115 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.858 11.673 2 0.00013515 2918 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 159.58 101.42 406810000 106090000 92741000 98844000 0 0 0 12132000 12203000 10929000 0 0 0 9287000 10963000 8666900 0 0 0 15339000 13124000 16494000 0 0 0 10791 852 10507 201936;201937;201938;201939;201940;201941;201942;201943;201944;201945;201946;201947 124677;124678;124679;124680;124681;124682;124683;124684 124681 8 KALEEAGAEVEVK Unmodified 1371.7246 0.72456001 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 1 1 1 1 1 1 15.494 16.132 2;3 1.4518E-05 5487 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 140.14 86.39 53451000 5059900 4775000 4186000 3351200 3075700 3099000 0 0 0 5123100 3800900 3037900 2718100 2125800 1807200 0 0 0 3383900 3850400 4056900 0 0 0 10792 351 10508 201948;201949;201950;201951;201952;201953;201954;201955;201956;201957;201958;201959;201960;201961;201962;201963;201964;201965;201966;201967;201968 124685;124686;124687;124688;124689;124690;124691 124686 7 KALEPGGHDR Unmodified 1078.552 0.55195579 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 5.0787 5.991 2 0.00071754 1100 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.309 90.375 85349000 0 0 0 0 0 0 0 10545000 0 0 0 0 12227000 10718000 11060000 0 0 0 14353000 13200000 13247000 0 0 0 10793 946 10509 201969;201970;201971;201972;201973;201974;201975 124692;124693;124694;124695;124696;124697 124696 6 KALQECMQHNFSVFR Unmodified 1893.8978 0.89780689 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 24.84 24.015 3 0.0051792 8512 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 55.656 50.551 28700000 0 0 0 2385200 3941400 0 0 0 0 0 0 0 0 0 0 1101500 0 890060 4623500 0 5093400 5014300 0 5650900 10794 698 10510 201976;201977;201978;201979;201980;201981;201982;201983 124698;124699 124698 2 KALTGLSPDEIVNQVK Unmodified 1710.9516 0.95159983 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 33.859 32.35 2;3 1.3995E-06 12883 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 97.235 91.862 176400000 3931800 4273000 2227900 5394000 5405400 7550500 6723900 10649000 9195700 9749900 11828000 8006800 6861300 6411600 5644100 1027300 3265300 4847700 11905000 15672000 14194000 6463800 9294900 5880100 10795 1383 10511 201984;201985;201986;201987;201988;201989;201990;201991;201992;201993;201994;201995;201996;201997;201998;201999;202000;202001;202002;202003;202004;202005;202006;202007;202008;202009;202010;202011;202012;202013;202014;202015 124700;124701;124702;124703;124704;124705;124706;124707;124708;124709;124710;124711;124712;124713;124714;124715;124716;124717 124701 17 KALVGNLK Unmodified 841.53854 0.53853756 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 12.401 12.968 2 0.12449 3083 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 49.358 25.386 21989000 0 0 2430900 0 0 0 3415400 0 4406000 0 0 0 0 0 0 0 0 0 0 0 4648700 2823800 2587400 1676400 10796 804 10512 202016;202017;202018;202019;202020;202021;202022 124718 124718 1 KAMDEQGK Unmodified 905.42767 0.42766648 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.757 7.2874 2 0.0006618 1641 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 134.15 89.458 430990000 69903000 64678000 51711000 0 0 0 10761000 16474000 18114000 1089700 1114200 1208800 27143000 22542000 0 17547000 11266000 12860000 32969000 35348000 35246000 593940 421570 0 10797 728 10513 202023;202024;202025;202026;202027;202028;202029;202030;202031;202032;202033;202034;202035;202036;202037;202038;202039;202040;202041 124719;124720;124721;124722;124723;124724;124725;124726;124727;124728 124720 10 KAPAEPQR Unmodified 895.48756 0.48756462 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.4888 8.0976 2 5.6519E-05 1824 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 172.03 151.33 10606000000 0 2264800 1645500 1054000000 794710000 553550000 664630000 575460000 680280000 107770000 122450000 102750000 451910000 380410000 355570000 51807000 43251000 47499000 665360000 630610000 617900000 924670000 856190000 920880000 10798 542 10514 202042;202043;202044;202045;202046;202047;202048;202049;202050;202051;202052;202053;202054;202055;202056;202057;202058;202059;202060;202061;202062;202063;202064 124729;124730;124731;124732;124733;124734;124735;124736;124737;124738;124739;124740;124741;124742;124743;124744;124745 124739 17 KAPAEPQRYDAVLVAIGR Unmodified 1953.0796 0.07959431 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 3 3 3 4 3 3 3 4 4 3 29.813 28.38 2;3;4 1.3694E-16 10515 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 183.89 173.84 16589000000 0 0 0 2879200000 2702900000 3012100000 0 0 0 265940000 233210000 255970000 0 0 0 89908000 69584000 72867000 0 0 0 2377200000 2143600000 2486900000 10799 542 10515 202065;202066;202067;202068;202069;202070;202071;202072;202073;202074;202075;202076;202077;202078;202079;202080;202081;202082;202083;202084;202085;202086;202087;202088;202089;202090;202091;202092;202093;202094;202095;202096;202097;202098;202099;202100;202101;202102;202103;202104;202105;202106 124746;124747;124748;124749;124750;124751;124752;124753;124754;124755;124756;124757;124758;124759;124760;124761;124762;124763;124764;124765;124766;124767;124768;124769;124770;124771;124772;124773;124774;124775;124776;124777;124778 124760 33 KAPTADLEDDRPSLPDEVALGVTYDNIDDYLEGK Unmodified 3733.7847 0.78466025 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 51.715 50.47 3;4 5.8777E-34 24967 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 196.77 195.26 2556100000 229500000 251730000 255920000 0 0 1084600 252830000 263380000 221600000 0 0 0 160540000 190580000 166120000 0 0 0 206340000 189010000 167420000 0 0 0 10800 1154 10516 202107;202108;202109;202110;202111;202112;202113;202114;202115;202116;202117;202118;202119;202120;202121;202122;202123;202124;202125;202126;202127;202128;202129;202130;202131 124779;124780;124781;124782;124783;124784;124785;124786;124787;124788;124789;124790;124791;124792;124793 124779 15 KAPVEQWSAGATGLGVR Unmodified 1725.9162 0.91621738 1456 P37095 pepB Peptidase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 1 1 2 2 2 27.616 26.585 2;3 3.3486E-14 12366 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 212.17 206.95 2812500000 220770000 200710000 182750000 984600 0 0 250460000 272530000 226140000 0 0 0 214450000 232580000 188350000 1051000 812160 870180 268930000 268140000 282960000 0 0 0 10801 1456 10517 202132;202133;202134;202135;202136;202137;202138;202139;202140;202141;202142;202143;202144;202145;202146;202147;202148;202149;202150;202151;202152;202153;202154;202155;202156;202157;202158;202159 124794;124795;124796;124797;124798;124799;124800;124801;124802;124803;124804;124805;124806;124807;124808;124809;124810;124811;124812;124813;124814;124815;124816 124799 21 KAQTDEVLENPDPR Unmodified 1610.79 0.79001381 979 P0AG18 purE N5-carboxyaminoimidazole ribonucleotide mutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 15.437 16.201 2;3 2.553E-14 5578 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 188.09 181.85 72970000 26219000 22880000 19651000 0 0 0 0 0 0 0 0 0 0 0 2348600 0 0 0 0 1870500 0 0 0 0 10802 979 10518 202160;202161;202162;202163;202164;202165;202166;202167 124817;124818;124819;124820;124821;124822 124817 6 KARPYSGYENFDFEIPVGGGVSDCYTR Unmodified 3083.4083 0.40833461 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 2 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 41.544 39.182 4 0.0025286 15573 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 44.931 42.648 20409000 0 0 0 0 0 0 0 0 0 4913300 2826700 4573900 0 0 0 0 0 0 0 0 0 3323900 0 4770600 10803 1426 10519 202168;202169;202170;202171;202172 124823 124823 1 KASEISIK Unmodified 874.51238 0.51238239 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 2 2 2 2 2 1 2 1 11.353 12.197 1;2 0.0088157 3010 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 83.998 68.366 1159500000 53965000 54993000 62645000 0 0 0 136020000 130110000 145050000 0 0 0 125470000 99236000 102160000 0 0 0 82742000 101310000 65817000 0 0 0 10804 257 10520 202173;202174;202175;202176;202177;202178;202179;202180;202181;202182;202183;202184;202185;202186;202187;202188;202189;202190;202191;202192 124824;124825;124826;124827;124828 124824 3 KASIPEGVWTK Unmodified 1214.6659 0.66592292 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 21.158 21.284 2;3 4.5098E-10 8093 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 184.36 161.83 859190000 71571000 73321000 67459000 2323100 2034100 2240800 55693000 51332000 50606000 3194500 4695100 5408900 72482000 63310000 59801000 0 0 0 81525000 91135000 81099000 8282000 7750800 3925300 10805 547 10521 202193;202194;202195;202196;202197;202198;202199;202200;202201;202202;202203;202204;202205;202206;202207;202208;202209;202210;202211;202212;202213;202214;202215;202216;202217;202218;202219;202220;202221;202222;202223;202224;202225;202226;202227;202228;202229;202230;202231;202232 124829;124830;124831;124832;124833;124834;124835;124836;124837;124838;124839;124840;124841;124842;124843;124844;124845;124846;124847;124848;124849 124847 21 KASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSK Unmodified 3685.8992 0.89917691 1299 P27302 tktA Transketolase 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 55.317 53.844 3;4 2.3374E-22 26534 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 142.79 141.3 933580000 50773000 46374000 53036000 0 0 0 91161000 83465000 75914000 0 0 0 84019000 86439000 81120000 0 0 0 94108000 91688000 95478000 0 0 0 10806 1299 10522 202233;202234;202235;202236;202237;202238;202239;202240;202241;202242;202243;202244;202245;202246;202247;202248;202249;202250;202251;202252;202253;202254;202255;202256 124850;124851;124852;124853;124854;124855;124856 124854 7 KATIVNAGSSDFLEGEQVEYSR Unmodified 2399.1605 0.16048299 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 1 3 2 3 12 11 11 3 3 4 18 17 19 4 4 4 11 15 13 36.407 35.088 2;3;4 2.4911E-103 12002 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 446.84 433.72 34633000000 153250000 113610000 117000000 13375000 13290000 14811000 152920000 106160000 102050000 2063300000 2198700000 2228900000 134070000 139960000 141430000 6541500000 5441700000 5876600000 223380000 197200000 215140000 2999700000 2703100000 2741500000 10807 458 10523 202257;202258;202259;202260;202261;202262;202263;202264;202265;202266;202267;202268;202269;202270;202271;202272;202273;202274;202275;202276;202277;202278;202279;202280;202281;202282;202283;202284;202285;202286;202287;202288;202289;202290;202291;202292;202293;202294;202295;202296;202297;202298;202299;202300;202301;202302;202303;202304;202305;202306;202307;202308;202309;202310;202311;202312;202313;202314;202315;202316;202317;202318;202319;202320;202321;202322;202323;202324;202325;202326;202327;202328;202329;202330;202331;202332;202333;202334;202335;202336;202337;202338;202339;202340;202341;202342;202343;202344;202345;202346;202347;202348;202349;202350;202351;202352;202353;202354;202355;202356;202357;202358;202359;202360;202361;202362;202363;202364;202365;202366;202367;202368;202369;202370;202371;202372;202373;202374;202375;202376;202377;202378;202379;202380;202381;202382;202383;202384;202385;202386;202387;202388;202389;202390;202391;202392;202393;202394;202395;202396;202397;202398;202399;202400;202401;202402;202403;202404;202405;202406;202407;202408;202409;202410;202411;202412;202413;202414;202415;202416;202417;202418;202419;202420;202421;202422;202423;202424;202425;202426 124857;124858;124859;124860;124861;124862;124863;124864;124865;124866;124867;124868;124869;124870;124871;124872;124873;124874;124875;124876;124877;124878;124879;124880;124881;124882;124883;124884;124885;124886;124887;124888;124889;124890;124891;124892;124893;124894;124895;124896;124897;124898;124899;124900;124901;124902;124903;124904;124905;124906;124907;124908;124909;124910;124911;124912;124913;124914;124915;124916;124917;124918;124919;124920;124921;124922;124923;124924;124925;124926;124927;124928;124929;124930;124931;124932;124933;124934;124935;124936;124937;124938;124939;124940;124941;124942;124943;124944;124945;124946;124947;124948;124949;124950;124951;124952;124953;124954;124955;124956;124957;124958;124959;124960;124961;124962;124963;124964;124965;124966 124925 104 KATLDTLALYLACGIDPEK Unmodified 2091.0922 0.092192411 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 52.412 51.156 2;3 4.2516E-45 24745 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 296.23 293.74 1224300000 0 21976000 0 0 0 561090 101980000 99378000 92682000 0 0 0 145560000 125140000 131780000 0 0 0 169060000 170890000 165290000 0 0 0 10808 57 10524 202427;202428;202429;202430;202431;202432;202433;202434;202435;202436;202437;202438;202439;202440;202441;202442;202443;202444;202445;202446 124967;124968;124969;124970;124971;124972;124973;124974;124975;124976;124977;124978;124979;124980;124981 124977 15 KATSGVPGK Unmodified 843.48142 0.48141661 641 P0AB98 atpB ATP synthase subunit a yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 6.9195 7.5517 2 0.000299 1842 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 123.21 91.629 215700000 0 0 0 0 0 0 25325000 0 28378000 8095400 9345200 7225800 17981000 21389000 17127000 0 0 0 24990000 21407000 23387000 0 5121800 5926900 10809 641 10525 202447;202448;202449;202450;202451;202452;202453;202454;202455;202456;202457;202458;202459 124982;124983;124984;124985 124982 4 KATVELLNR Unmodified 1042.6135 0.61349341 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.672 16.325 2 0.0009779 4017 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 101.43 82.648 580080000 147850000 131670000 131070000 4206000 3920400 5248000 36560000 37035000 42476000 4942900 5627800 6348800 4966300 0 0 0 0 0 6240100 6498600 5423700 0 0 0 10810 677 10526 202460;202461;202462;202463;202464;202465;202466;202467;202468;202469;202470;202471;202472;202473;202474;202475 124986;124987;124988 124988 3 KAVDALAGQSAK Unmodified 1157.6404 0.64043645 187 P08390 usg USG-1 protein yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.571 12.403 2 1.2121E-06 3369 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.55 129.46 126590000 11372000 10811000 7273200 0 0 0 16470000 17057000 14671000 0 0 0 9528700 9173700 13294000 0 0 0 5247100 4806000 6888300 0 0 0 10811 187 10527 202476;202477;202478;202479;202480;202481;202482;202483;202484;202485;202486;202487 124989 124989 1 KAVEFQDILK Unmodified 1189.6707 0.67067394 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 2 2 2 1 2 3 2 3 2 2 2 1 2 29.185 27.785 2;3 1.4776E-09 12736 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 200.71 161.93 3373700000 93322000 74739000 59371000 1478900 1656600 1751700 442170000 484740000 489640000 0 2201100 0 325690000 332530000 277770000 0 0 0 242230000 267360000 267930000 4102800 2033500 2958100 10812 697 10528 202488;202489;202490;202491;202492;202493;202494;202495;202496;202497;202498;202499;202500;202501;202502;202503;202504;202505;202506;202507;202508;202509;202510;202511;202512;202513;202514;202515;202516;202517;202518;202519;202520;202521;202522 124990;124991;124992;124993;124994;124995;124996;124997;124998;124999;125000;125001;125002;125003;125004;125005;125006;125007;125008 124998 19 KAVIPVAGLGTR Unmodified 1180.7292 0.72919187 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 23.236 22.494 2;3 3.0236E-05 9395 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.53 107.94 1171800000 74159000 87157000 70685000 1067000 0 0 129690000 128320000 115550000 2451600 0 2652500 96884000 81557000 78383000 0 0 0 87793000 111690000 100220000 1115800 887280 1493700 10813 876 10529 202523;202524;202525;202526;202527;202528;202529;202530;202531;202532;202533;202534;202535;202536;202537;202538;202539;202540;202541;202542;202543;202544;202545;202546;202547;202548;202549;202550;202551;202552;202553;202554 125009;125010;125011;125012;125013;125014;125015;125016 125013 7 KAVLLPGDLSDEK Unmodified 1383.7609 0.76094551 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 25.335 24.181 2;3 1.1915E-05 11015 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.57 102.75 234000000 51332000 60900000 48308000 0 0 0 22303000 23331000 27828000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10814 995 10530 202555;202556;202557;202558;202559;202560;202561;202562;202563;202564;202565;202566 125017;125018;125019;125020;125021;125022;125023 125019 6 KAVLLSFR Unmodified 932.58074 0.58073672 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.226 22.491 2 0.017045 10108 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 73.208 45.101 314540000 25141000 31672000 29846000 843840 1473300 0 36356000 29076000 27509000 0 514270 0 25333000 21065000 22844000 0 0 0 29873000 0 32459000 0 0 538890 10815 512 10531 202567;202568;202569;202570;202571;202572;202573;202574;202575;202576;202577;202578;202579;202580;202581 125024;125025 125024 2 KAVSTLPADVQAK Unmodified 1326.7507 0.75071518 1072 P11557 damX Cell division protein DamX yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.582 15.176 2 0.000598 4212 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 80.014 78.206 45046000 0 0 2553700 645820 495850 755830 5338500 0 4843900 3616500 2797500 3037700 2261700 0 0 0 0 0 4599300 4045400 5312100 1583900 1442100 1716700 10816 1072 10532 202582;202583;202584;202585;202586;202587;202588;202589;202590;202591;202592;202593;202594;202595;202596;202597 125026 125026 1 KAVTLGLK Unmodified 828.54329 0.54328858 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.705 14.445 2 0.0025594 4552 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.8 43.005 923340000 256600000 230250000 219790000 0 0 0 42731000 45683000 46900000 1093600 727040 0 8260800 9719200 6024700 0 0 0 19539000 18415000 17609000 0 0 0 10817 1254 10533 202598;202599;202600;202601;202602;202603;202604;202605;202606;202607;202608;202609;202610;202611 125027;125028;125029;125030;125031;125032;125033 125033 7 KAVVAAVDALGLLEEIKPHDLTVPYGDR Unmodified 2988.6284 0.62842178 158 P07118 valS Valine--tRNA ligase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 2 2 1 2 2 1 2 2 2 1 51.433 50.162 4;5 4.4474E-16 24743 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 144.49 143.66 2122300000 37402000 39571000 41817000 3093200 2623800 0 204900000 212340000 233280000 0 0 4182900 233700000 206120000 31298000 0 0 0 269000000 293580000 307380000 0 0 1987000 10818 158 10534 202612;202613;202614;202615;202616;202617;202618;202619;202620;202621;202622;202623;202624;202625;202626;202627;202628;202629;202630;202631;202632;202633;202634;202635 125034;125035;125036;125037;125038;125039;125040;125041;125042;125043;125044;125045;125046;125047;125048;125049;125050;125051 125038 18 KAYVTLK Unmodified 821.50109 0.50108942 822 P0ADZ0 rplW 50S ribosomal protein L23 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.428 13.043 2 0.0020829 3454 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 126.04 45.48 391930000 45697000 44462000 46365000 5024700 3859900 4898700 13583000 16065000 11559000 4660100 5955400 5765400 22724000 17903000 20557000 6587700 5920400 5243000 34956000 27385000 30035000 3669700 4022500 5032400 10819 822 10535 202636;202637;202638;202639;202640;202641;202642;202643;202644;202645;202646;202647;202648;202649;202650;202651;202652;202653;202654;202655;202656;202657;202658;202659 125052;125053;125054;125055;125056;125057;125058;125059;125060;125061;125062 125061 11 KAYVVGEGALIHELYK Unmodified 1788.9774 0.97742065 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.942 30.557 3 1.9351E-06 10479 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 91.457 89.17 141040000 14334000 13534000 10664000 14223000 15364000 11580000 11951000 12200000 11089000 0 0 0 8571700 8151800 9375600 0 0 0 0 0 0 0 0 0 10820 906 10536 202660;202661;202662;202663;202664;202665;202666;202667;202668;202669;202670;202671 125063;125064;125065 125064 3 KCGHMGGK Unmodified 873.39493 0.39492656 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 2 2 2 3.9105 4.7987 2 0.0014751 852 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.04 111.04 229640000 63140000 53048000 52538000 159180 196700 0 553840 0 0 0 0 0 8056300 6612900 1800500 0 0 0 17352000 13200000 12987000 0 0 0 10821 517 10537 202672;202673;202674;202675;202676;202677;202678;202679;202680;202681;202682;202683;202684;202685;202686;202687;202688 125066;125067;125068;125069;125070;125071;125072;125073 125071 8 KCGHMGGK Oxidation (M) 889.38984 0.38984118 517 P0A9G6 aceA Isocitrate lyase yes yes 0 1 1 By MS/MS By matching By MS/MS 1 1 1 2.4971 3.3299 2 0.041878 387 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 71.715 71.715 6775400 2568200 2148500 2058800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10822 517 10537 202689;202690;202691 125074;125075 125074 316 2 KCPSPVWMVK Unmodified 1230.6253 0.62532043 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 1 1 2 22.468 22.074 2;3 0.00036789 9664 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.496 80.391 281110000 28939000 23378000 0 0 0 0 54260000 43533000 66619000 0 0 0 16657000 16848000 30878000 0 0 0 0 0 0 0 0 0 10823 585 10538 202692;202693;202694;202695;202696;202697;202698;202699;202700;202701;202702;202703 125076;125077;125078;125079;125080;125081;125082;125083;125084;125085;125086 125078 11 KCYGPSATSEK Unmodified 1226.5601 0.56013721 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 2 2 2 2 2 10.402 11.269 2;3 1.6532E-07 2653 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 170.89 147.82 262110000 0 0 0 0 0 0 16958000 23992000 19437000 0 0 0 32663000 27644000 24449000 0 0 0 38435000 44272000 34264000 0 0 0 10824 38 10539 202704;202705;202706;202707;202708;202709;202710;202711;202712;202713;202714;202715;202716;202717;202718;202719 125087;125088;125089;125090;125091;125092;125093 125087 3 KDAEAWFNEK Unmodified 1236.5775 0.57750184 13 CON__P13645;CON__Q7Z3Y7 yes no 0 0 1 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 20.58 20.522 2 9.869E-06 6518 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 155 130.97 7690100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1396400 672040 0 0 0 0 0 2473800 3147800 + 10825 13 10540 202720;202721;202722;202723;202724 125094;125095 125095 2 KDAMVPMGGLLCMK Unmodified 1549.7489 0.74888274 397 P0A853 tnaA Tryptophanase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 1 1 1 2 2 2 38.403 36.881 2;3 4.2292E-08 17807 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 177.1 152.81 12044000000 2093600000 1821200000 2080400000 0 0 2045000 805830000 867830000 938550000 0 713580 0 594250000 600620000 532840000 1365500 1068900 1320000 636110000 582170000 483820000 0 0 0 10826 397 10541 202725;202726;202727;202728;202729;202730;202731;202732;202733;202734;202735;202736;202737;202738;202739;202740;202741;202742;202743;202744;202745;202746;202747;202748;202749;202750;202751;202752;202753 125096;125097;125098;125099;125100;125101;125102;125103;125104;125105;125106;125107;125108;125109;125110;125111;125112;125113;125114;125115;125116;125117;125118;125119 125111 24 KDAMVPMGGLLCMK Oxidation (M) 1565.7438 0.74379736 397 P0A853 tnaA Tryptophanase yes yes 0 1 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 3 2 2 3 2 1 2 2 2 3 34.114 32.643 2;3 6.9803E-05 16062 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.345 87.503 250780000 60539000 49992000 0 0 0 0 14555000 17433000 34046000 0 0 0 11365000 7725000 11722000 0 0 0 14032000 14274000 15099000 0 0 0 10827 397 10541 202754;202755;202756;202757;202758;202759;202760;202761;202762;202763;202764;202765;202766;202767;202768;202769;202770;202771;202772;202773;202774;202775;202776;202777 125120;125121;125122;125123;125124;125125;125126;125127 125123 185;186;187 8 KDAMVPMGGLLCMKDDSFFDVYTECR Unmodified 3084.3523 0.35234133 397 P0A853 tnaA Tryptophanase yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 51.393 50.335 4 0.03413 18194 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 39.153 36.568 22134000 0 0 0 6161700 5647700 5088000 0 0 0 0 0 1925700 0 0 0 0 0 1623900 0 0 0 0 0 1687000 10828 397 10542 202778;202779;202780;202781;202782;202783 125128 125128 1 KDDAAYYFASVVK Unmodified 1475.7296 0.72964538 1583 P45955 ybgF Uncharacterized protein YbgF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.049 33.593 2;3 3.9202E-12 16007 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 184.98 174.22 393230000 37584000 37909000 36256000 0 0 0 27269000 30579000 28195000 0 0 0 24206000 24551000 28302000 0 0 0 39141000 39161000 40080000 0 0 0 10829 1583 10543 202784;202785;202786;202787;202788;202789;202790;202791;202792;202793;202794;202795;202796;202797;202798;202799;202800;202801;202802;202803;202804;202805;202806;202807 125129;125130;125131;125132;125133;125134;125135;125136;125137;125138;125139;125140;125141;125142;125143;125144;125145;125146;125147 125141 19 KDDAELTAAFNK Unmodified 1321.6514 0.65139506 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 2 20.523 20.954 2;3 7.0178E-32 8126 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 270.56 268.35 970000000 352800000 305900000 261110000 495580 0 0 5118400 2940200 4714800 0 0 0 4537500 3891300 5027500 0 0 0 4430700 5676200 13359000 0 0 0 10830 217 10544 202808;202809;202810;202811;202812;202813;202814;202815;202816;202817;202818;202819;202820;202821;202822;202823;202824 125148;125149;125150;125151;125152;125153;125154;125155;125156 125152 9 KDDETLSK Unmodified 934.46074 0.46074075 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5.1418 6.0521 2 5.004E-09 1289 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 207.29 134.25 7475800000 0 0 0 0 0 0 1159000000 1316900000 1364500000 0 0 0 643090000 545320000 586320000 0 0 0 628230000 619270000 613140000 0 0 0 10831 321 10545 202825;202826;202827;202828;202829;202830;202831;202832;202833 125157;125158;125159;125160;125161;125162;125163;125164;125165 125161 9 KDDETLSKK Unmodified 1062.5557 0.55570376 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 2 2 2 2 1 2 1 2 2 2 4.605 5.5065 2;3 8.1045E-05 923 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 156.83 124.89 774260000 0 0 0 1656300 0 3676600 127270000 108810000 112750000 0 0 0 50836000 49658000 33550000 0 0 0 107500000 95791000 82757000 0 0 0 10832 321 10546 202834;202835;202836;202837;202838;202839;202840;202841;202842;202843;202844;202845;202846;202847;202848;202849;202850;202851;202852 125166;125167;125168;125169;125170 125169 5 KDDGNTIMVVQK Unmodified 1346.6864 0.68640036 478 P0A905 slyB Outer membrane lipoprotein SlyB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 16.271 16.732 2;3 3.5918E-31 5849 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 267.39 239.38 510880000 0 0 0 6179400 13344000 11224000 0 24660000 0 36742000 39380000 38282000 24939000 21101000 21928000 17338000 17338000 17142000 53446000 51050000 58876000 23468000 16781000 17658000 10833 478 10547 202853;202854;202855;202856;202857;202858;202859;202860;202861;202862;202863;202864;202865;202866;202867;202868;202869;202870;202871;202872;202873;202874;202875;202876;202877;202878;202879;202880;202881;202882;202883;202884;202885;202886 125171;125172;125173;125174;125175;125176;125177;125178;125179;125180;125181;125182;125183;125184;125185;125186;125187;125188;125189;125190;125191;125192;125193;125194 125189 23 KDDGNTIMVVQK Oxidation (M) 1362.6813 0.68131498 478 P0A905 slyB Outer membrane lipoprotein SlyB yes yes 0 1 1 By matching By MS/MS By MS/MS 1 1 1 13.465 13.588 2 0.00083186 3356 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 87.066 66.196 17875000 0 0 0 0 0 0 0 0 0 6350300 3726000 7798700 0 0 0 0 0 0 0 0 0 0 0 0 10834 478 10547 202887;202888;202889 125195;125196 125196 284 2 KDDICYATTNR Unmodified 1355.614 0.6139637 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.337 13.214 2 0.0001208 3811 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 120.54 111.63 201860000 0 0 0 0 0 0 23646000 23808000 19070000 0 0 0 22190000 22003000 22981000 0 0 0 25631000 18674000 23854000 0 0 0 10835 1650 10548 202890;202891;202892;202893;202894;202895;202896;202897;202898 125197;125198;125199 125197 3 KDDLYLSSEQMK Unmodified 1455.6915 0.69154532 1181 P21499 rnr Ribonuclease R yes yes 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 20.247 20.747 2 1.6695E-08 8049 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 173.37 155.14 49571000 15285000 16113000 15591000 0 0 0 0 0 0 0 0 0 1222800 0 0 0 0 0 1358600 0 0 0 0 0 10836 1181 10549 202899;202900;202901;202902;202903 125200 125200 1 KDDPQFK Unmodified 876.43413 0.43413207 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 10.436 11.162 2 0.0018249 2591 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 129.68 99.876 632870000 189620000 197050000 153710000 0 0 0 32786000 30625000 29086000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10837 1501 10550 202904;202905;202906;202907;202908;202909 125201;125202 125202 2 KDDQEETVR Unmodified 1118.5204 0.52038089 1733 P69441 adk Adenylate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 3 2 2 2 3 2 2 3 3 5.58 6.471 2;3 7.3671E-16 1153 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 234.82 215.03 5160300000 456910000 477140000 506390000 2465200 2600800 4492200 388590000 238850000 411330000 0 0 0 476750000 427030000 451240000 0 0 0 506270000 340460000 469750000 0 0 0 10838 1733 10551 202910;202911;202912;202913;202914;202915;202916;202917;202918;202919;202920;202921;202922;202923;202924;202925;202926;202927;202928;202929;202930;202931;202932;202933;202934;202935;202936;202937;202938;202939;202940 125203;125204;125205;125206;125207;125208;125209;125210;125211;125212;125213;125214;125215;125216;125217;125218;125219;125220;125221;125222;125223 125203 21 KDDQEETVRK Unmodified 1246.6153 0.61534391 1733 P69441 adk Adenylate kinase yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 4.7258 5.5885 2 0.011177 946 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 83.647 77.343 16613000 0 0 0 0 0 0 0 0 0 0 0 0 3546700 1824300 0 0 0 0 3630700 3946100 3664900 0 0 0 10839 1733 10552 202941;202942;202943;202944;202945 125224;125225 125225 2 KDDTIPAIISHDE Unmodified 1452.7096 0.70963822 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 2 2 2 2 2 2 28.374 27.131 2;3 1.3853E-08 11888 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 158.47 156.29 887310000 60273000 110550000 96498000 821240 0 0 22066000 73260000 63908000 0 0 0 59687000 50007000 54606000 0 0 0 92483000 108490000 94650000 0 0 0 10840 829 10553 202946;202947;202948;202949;202950;202951;202952;202953;202954;202955;202956;202957;202958;202959;202960;202961;202962;202963;202964;202965;202966;202967;202968 125226;125227;125228;125229;125230;125231;125232;125233;125234;125235;125236;125237;125238 125238 11 KDEDGNYLVDVILDEAANK Unmodified 2120.0273 0.027343548 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 1 1 1 2 2 2 53.075 51.78 2;3 2.7493E-95 25619 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 355.38 345.85 14139000000 946640000 886930000 842010000 3820200 0 0 1156400000 1125300000 1089100000 4287200 2794800 0 1435900000 1295900000 1304300000 4660700 5854200 5188200 1277100000 1287600000 1465000000 0 0 0 10841 24 10554 202969;202970;202971;202972;202973;202974;202975;202976;202977;202978;202979;202980;202981;202982;202983;202984;202985;202986;202987;202988;202989;202990;202991;202992;202993;202994;202995;202996;202997;202998 125239;125240;125241;125242;125243;125244;125245;125246;125247;125248;125249;125250;125251;125252;125253;125254;125255;125256;125257;125258;125259;125260;125261;125262;125263;125264;125265 125244 25 KDESTEK Unmodified 835.39233 0.39232683 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 1 1 1 1.9116 2.8682 2 0.00031022 329 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 162.25 162.25 189630000 0 0 0 0 0 0 0 154400 0 0 0 0 16224000 12148000 18621000 0 0 0 42497000 44405000 55575000 0 0 0 10842 993 10555 202999;203000;203001;203002;203003;203004;203005;203006;203007;203008;203009 125266;125267;125268;125269;125270;125271;125272;125273;125274;125275;125276;125277;125278;125279;125280;125281 125267 16 KDFDNTVAIHPTAAEEFVTMR Unmodified 2391.1529 0.15289519 128 P06715 gor Glutathione reductase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.853 35.196 3 1.0122E-10 17304 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.67 125.57 184850000 18961000 15666000 17196000 0 0 0 17435000 17810000 15102000 0 0 0 11919000 13339000 14252000 0 0 0 12975000 14044000 16149000 0 0 0 10843 128 10556 203010;203011;203012;203013;203014;203015;203016;203017;203018;203019;203020;203021 125282;125283;125284;125285 125282 2 KDGNLNLTGQAPYK Unmodified 1517.7838 0.78380622 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 2 2 1 1 2 2 2 1 1 2 1 2 2 2 2 2 1 1 18.819 19.233 2;3 6.3343E-06 7254 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 132.59 117.44 181030000 9421000 0 5717900 1742300 1731100 0 22292000 19580000 16895000 6220600 4509600 5836500 6227400 12696000 8233300 0 0 0 22240000 16104000 19249000 1098100 1236400 0 10844 1304 10557 203022;203023;203024;203025;203026;203027;203028;203029;203030;203031;203032;203033;203034;203035;203036;203037;203038;203039;203040;203041;203042;203043;203044;203045;203046;203047;203048;203049;203050 125286;125287;125288;125289 125289 3 KDGQTTLLDLK Unmodified 1230.682 0.68196691 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 24.218 23.032 2;3 0.0017146 8213 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 80.231 57.16 9279200 0 0 0 0 0 0 0 0 0 0 5479800 2454000 0 1345400 0 0 0 0 0 0 0 0 0 0 10845 1877 10558 203051;203052;203053;203054;203055;203056 125290;125291;125292;125293 125291 4 KDGTYETIYNK Unmodified 1330.6405 0.64049603 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 13.88 14.771 2 2.7267E-10 4781 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.33 126.61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10846 1349 10559 203057;203058;203059 125294;125295;125296 125295 3 KDHHSRR Unmodified 934.48454 0.48454493 823 P0ADZ4 rpsO 30S ribosomal protein S15 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 7.4484 7.5895 2 0.0034368 1208 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 143.61 143.61 61155000 0 0 0 0 0 0 0 0 0 414630 653790 459050 0 0 0 13722000 25272000 20338000 0 0 0 295520 0 0 10847 823 10560 203060;203061;203062;203063;203064;203065;203066 125297;125298;125299 125299 3 KDIALGEEFVNK Unmodified 1361.7191 0.7190807 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.159 24.155 2 1.0423E-11 10740 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 190.36 165.48 218370000 33743000 46501000 28374000 0 0 0 11293000 11550000 13117000 0 0 0 7656900 8637300 7573900 0 0 0 15749000 16510000 17662000 0 0 0 10848 1642 10561 203067;203068;203069;203070;203071;203072;203073;203074;203075;203076;203077;203078 125300;125301;125302;125303;125304;125305;125306;125307;125308;125309 125306 10 KDIENQYETQITQIEHEVSSSGQEVQSSAK Unmodified 3391.6016 0.60155092 16 CON__P35527 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS 1 1 1 2 42.168 39.807 3;4 4.5707E-06 15941 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 75.018 69.532 22242000 0 0 0 0 708020 0 0 0 0 2532800 2603600 16398000 0 0 0 0 0 0 0 0 0 0 0 0 + 10849 16 10562 203079;203080;203081;203082;203083 125310;125311 125310 2 KDILEVICK Unmodified 1116.6213 0.62128091 306 P0A734 minE Cell division topological specificity factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 27.974 26.773 2;3 0.00011589 12351 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.08 85.143 652050000 63716000 69758000 60252000 1113300 1589900 1804100 37192000 41154000 38222000 2458000 1926600 2050700 58236000 42641000 37822000 1373800 947180 1027100 68840000 61023000 58900000 0 0 0 10850 306 10563 203084;203085;203086;203087;203088;203089;203090;203091;203092;203093;203094;203095;203096;203097;203098;203099;203100;203101;203102;203103;203104;203105;203106;203107;203108;203109;203110;203111;203112;203113;203114;203115;203116;203117;203118;203119 125312;125313;125314;125315;125316;125317;125318;125319;125320 125314 9 KDISSANLR Unmodified 1002.5458 0.54580778 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.45 12.283 2 0.00047654 3216 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 111.74 84.252 229350000 11676000 14535000 12078000 0 0 0 25997000 25027000 26565000 0 0 0 19150000 20676000 18099000 0 0 0 20016000 19472000 16057000 0 0 0 10851 803 10564 203120;203121;203122;203123;203124;203125;203126;203127;203128;203129;203130;203131 125321;125322;125323;125324;125325;125326 125322 6 KDLALNQAMIPLGSCTMK Unmodified 1990.005 0.0049740829 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.707 36.219 2;3 1.2129E-06 17590 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.249 82.698 1378400000 126870000 140040000 107770000 7775100 8491200 8778800 0 0 0 8418200 0 7090300 0 0 230730000 3721400 3438600 3303700 248200000 229260000 223590000 6511200 6910600 7481000 10852 1409 10565 203132;203133;203134;203135;203136;203137;203138;203139;203140;203141;203142;203143;203144;203145;203146;203147;203148;203149;203150 125327;125328;125329;125330;125331;125332 125330 6 KDLELGGHMASFQSSATIYDVCFNHFFR Unmodified 3276.5121 0.51208817 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 7 7 7 2 2 2 3 2 3 2 1 1 1 2 2 7 4 7 47.614 46.056 3;4;5;6 3.8528E-53 18026 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 234.27 232.03 4757100000 0 8317900 8505800 870810000 919400000 778910000 34150000 37396000 26175000 42833000 41854000 46585000 20140000 7031400 9837700 0 0 0 19170000 30364000 38936000 629120000 609640000 577920000 10853 939 10566 203151;203152;203153;203154;203155;203156;203157;203158;203159;203160;203161;203162;203163;203164;203165;203166;203167;203168;203169;203170;203171;203172;203173;203174;203175;203176;203177;203178;203179;203180;203181;203182;203183;203184;203185;203186;203187;203188;203189;203190;203191;203192;203193;203194;203195;203196;203197;203198;203199;203200;203201;203202;203203;203204;203205;203206;203207;203208;203209;203210;203211;203212;203213;203214 125333;125334;125335;125336;125337;125338;125339;125340;125341;125342;125343;125344;125345;125346;125347;125348;125349;125350;125351;125352;125353;125354;125355;125356;125357;125358;125359;125360;125361;125362;125363;125364;125365;125366;125367;125368;125369;125370;125371 125346 37 KDLELGGHMASFQSSATIYDVCFNHFFR Oxidation (M) 3292.507 0.50700279 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 4 4 4 3 44.761 43.019 4;5 3.5205E-11 16324 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 125.54 124.5 234440000 0 0 0 55145000 57508000 47387000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27084000 25204000 22113000 10854 939 10566 203215;203216;203217;203218;203219;203220;203221;203222;203223;203224;203225;203226;203227;203228;203229;203230;203231;203232;203233;203234;203235;203236;203237;203238 125372;125373;125374;125375;125376;125377;125378;125379;125380;125381;125382;125383;125384;125385;125386;125387;125388;125389;125390;125391;125392 125383 433 21 KDLGYGLLLK Unmodified 1118.6699 0.66994566 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 1 2 2 2 2 1 2 1 2 2 2 1 2 2 2 2 1 1 31.962 30.463 2;3 6.1328E-06 11645 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 156.35 97.532 253730000 7006800 7766900 3578200 1234700 649330 1722700 32908000 39906000 39754000 5580000 8608600 7129800 17148000 18605000 16740000 1052400 0 0 11687000 11270000 15685000 2047500 1859600 1789100 10855 664 10567 203239;203240;203241;203242;203243;203244;203245;203246;203247;203248;203249;203250;203251;203252;203253;203254;203255;203256;203257;203258;203259;203260;203261;203262;203263;203264;203265;203266;203267;203268;203269;203270;203271;203272;203273;203274;203275 125393;125394;125395;125396;125397;125398;125399;125400 125394 8 KDLIVDSYIK Unmodified 1192.6703 0.67033959 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.415 26.052 2 0.00035404 11782 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 113.67 100.63 146860000 3929500 6717000 6327600 2428800 2454700 3371600 13266000 12582000 13624000 5899400 5659900 5625400 6477700 8931000 5011500 0 0 0 14219000 7947600 10697000 5628900 3000100 3056400 10856 648 10568 203276;203277;203278;203279;203280;203281;203282;203283;203284;203285;203286;203287;203288;203289;203290;203291;203292;203293;203294;203295;203296 125401;125402;125403;125404 125402 3 KDLPDLVYMTEAEK Unmodified 1650.8175 0.81747411 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 36.22 34.71 2;3 8.9849E-08 13685 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 160.69 139.91 441080000 18843000 19878000 17591000 2297000 2564200 2907100 20731000 14203000 22348000 26802000 21535000 19865000 19899000 23292000 18616000 22115000 13694000 18268000 30466000 28532000 27458000 17843000 15132000 16200000 10857 1057 10569 203297;203298;203299;203300;203301;203302;203303;203304;203305;203306;203307;203308;203309;203310;203311;203312;203313;203314;203315;203316;203317;203318;203319;203320;203321;203322;203323;203324;203325;203326;203327;203328;203329;203330;203331;203332;203333;203334;203335;203336;203337;203338;203339 125405;125406;125407;125408;125409;125410;125411;125412;125413;125414;125415;125416;125417;125418;125419;125420;125421;125422;125423;125424;125425;125426;125427 125413 23 KDLSEELQILEAGLFSR Unmodified 1947.0313 0.031306713 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 2 2 2 2 2 2 1 2 2 3 4 5 2 1 2 2 3 2 54.811 53.68 2;3;4 1.8208E-104 20445 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 464.13 462.99 36287000000 52434000 75347000 41481000 8785500 8573300 7767600 50158000 29997000 34079000 1188100000 1243200000 1083800000 48008000 59168000 64860000 7204000000 9764800000 10601000000 61351000 40794000 57990000 1524700000 1479000000 1557900000 10858 463 10570 203340;203341;203342;203343;203344;203345;203346;203347;203348;203349;203350;203351;203352;203353;203354;203355;203356;203357;203358;203359;203360;203361;203362;203363;203364;203365;203366;203367;203368;203369;203370;203371;203372;203373;203374;203375;203376;203377;203378;203379;203380;203381;203382;203383;203384;203385;203386;203387;203388;203389 125428;125429;125430;125431;125432;125433;125434;125435;125436;125437;125438;125439;125440;125441;125442;125443;125444;125445;125446;125447;125448;125449;125450;125451;125452;125453;125454;125455;125456;125457;125458;125459;125460;125461;125462;125463;125464;125465 125432 35 KDLTAADGQTR Unmodified 1174.5942 0.59421454 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.619 11.461 2 1.726E-07 2714 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 170.47 154.51 219730000 19339000 15969000 16312000 0 682350 0 21241000 21086000 22245000 0 0 0 16229000 14659000 18169000 0 0 0 17387000 18757000 17652000 0 0 0 10859 1903 10571 203390;203391;203392;203393;203394;203395;203396;203397;203398;203399;203400;203401;203402 125466;125467;125468;125469;125470;125471;125472;125473 125466 8 KDMQEMFEAPVHLELWVK Unmodified 2229.0962 0.096231931 125 P06616 era GTPase Era yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 2 2 48.803 47.453 3;4 6.0638E-07 23422 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 102.89 102.55 232880000 29252000 33258000 22773000 1430600 0 0 11483000 12049000 15379000 2152400 4129100 0 9476200 10533000 11986000 0 0 0 16071000 29268000 23644000 0 0 0 10860 125 10572 203403;203404;203405;203406;203407;203408;203409;203410;203411;203412;203413;203414;203415;203416;203417;203418;203419;203420;203421;203422 125474;125475;125476;125477;125478;125479;125480;125481;125482 125475 6 KDNFPLLLDYATSAIAFGK Unmodified 2083.099 0.098992348 1342 P30178 ybiC Uncharacterized oxidoreductase YbiC yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.626 53.163 3 7.3492E-10 26095 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.6 114.5 347080000 68428000 60545000 66005000 0 0 0 26516000 29372000 25498000 0 0 0 13038000 13863000 0 0 0 0 25985000 17831000 0 0 0 0 10861 1342 10573 203423;203424;203425;203426;203427;203428;203429;203430;203431;203432 125483;125484 125484 2 KDNYAAANFSEGHYLQVEVAAR Unmodified 2452.1771 0.1771361 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 31.379 29.95 3 0.00022183 13963 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.52 63.374 60144000 0 0 0 0 0 0 6252500 7491700 7567300 0 0 0 4378300 4620200 3475200 0 0 0 10047000 7627300 8684800 0 0 0 10862 1371 10574 203433;203434;203435;203436;203437;203438;203439;203440;203441 125485 125485 1 KDPEMQVHIL Unmodified 1208.6223 0.62234354 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.627 26.479 2;3 0.015978 11618 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 67.507 51.845 327170000 18710000 18021000 15849000 0 0 0 28491000 32075000 29878000 0 0 0 29307000 32569000 24982000 0 0 0 32703000 33194000 31391000 0 0 0 10863 509 10575 203442;203443;203444;203445;203446;203447;203448;203449;203450;203451;203452;203453;203454;203455;203456;203457;203458;203459;203460;203461;203462;203463;203464;203465 125486;125487;125488;125489;125490;125491;125492;125493 125491 8 KDSTAELYHFIGK Unmodified 1507.7671 0.76709352 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 26.836 25.841 2;3 7.9175E-07 11845 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.17 120.79 349510000 37959000 47629000 38688000 0 0 0 0 0 0 0 0 0 0 31821000 36581000 0 0 0 57502000 46933000 52394000 0 0 0 10864 60 10576 203466;203467;203468;203469;203470;203471;203472;203473;203474;203475 125494;125495;125496;125497;125498;125499;125500;125501;125502;125503 125495 10 KDVDGAYMTK Unmodified 1126.5329 0.53285983 11 CON__P04264 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.909 12.53 2 5.7266E-09 2838 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 193.83 99.523 49256000 0 0 0 1966300 1349400 1319300 0 0 0 15654000 12869000 16098000 0 0 0 0 0 0 0 0 0 0 0 0 + 10865 11 10577 203476;203477;203478;203479;203480;203481;203482;203483;203484 125504;125505;125506;125507;125508;125509 125505 6 KDVDVWHPDVR Unmodified 1364.6837 0.68369824 1298 P27298 prlC Oligopeptidase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.631 20.121 3 2.4109E-05 7642 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.97 118.07 566300000 66163000 45883000 61538000 0 0 0 55308000 46807000 54495000 0 0 0 30374000 24758000 41943000 0 0 0 46796000 49174000 43061000 0 0 0 10866 1298 10578 203485;203486;203487;203488;203489;203490;203491;203492;203493;203494;203495;203496 125510;125511;125512;125513;125514;125515;125516;125517;125518;125519 125516 10 KDVIILLDSITR Unmodified 1384.829 0.8289655 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.225 41.524 3 8.8562E-06 20199 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.2 119.98 143660000 19460000 16968000 13611000 1950500 2382900 1173300 10530000 9177500 9286000 9768200 10266000 8498200 3831800 3031600 3565900 0 0 0 7329100 6395600 6430200 0 0 0 10867 982 10579 203497;203498;203499;203500;203501;203502;203503;203504;203505;203506;203507;203508;203509;203510;203511;203512;203513;203514 125520;125521;125522;125523;125524;125525;125526;125527;125528 125526 9 KDVNPDEAVAIGAAVQGGVLTGDVK Unmodified 2422.2704 0.27036779 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 3 2 3 3 4 4 3 4 4 4 3 3 3 3 4 1 2 2 42.891 41.048 2;3;4 3.6919E-50 19975 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 313.08 306.65 7178600000 86678000 599180000 547050000 33874000 31762000 31005000 841870000 778610000 893670000 207350000 198260000 188380000 563260000 517030000 518850000 0 0 0 85531000 78646000 833210000 48742000 52177000 43433000 10868 293 10580 203515;203516;203517;203518;203519;203520;203521;203522;203523;203524;203525;203526;203527;203528;203529;203530;203531;203532;203533;203534;203535;203536;203537;203538;203539;203540;203541;203542;203543;203544;203545;203546;203547;203548;203549;203550;203551;203552;203553;203554;203555;203556;203557;203558;203559;203560;203561;203562;203563;203564;203565;203566;203567;203568;203569;203570;203571;203572;203573;203574;203575;203576;203577;203578;203579;203580 125529;125530;125531;125532;125533;125534;125535;125536;125537;125538;125539;125540;125541;125542;125543;125544;125545;125546;125547;125548;125549;125550;125551;125552;125553;125554;125555;125556;125557;125558;125559;125560;125561;125562;125563;125564;125565;125566;125567;125568;125569;125570;125571;125572;125573;125574;125575;125576;125577;125578;125579;125580;125581 125562 51 KDVSIPTVEELLAAHNPWAK Unmodified 2217.1794 0.17936793 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 50.431 49.017 3 4.7927E-06 24066 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.574 82.603 65366000 7007400 7629800 8794500 0 0 0 7930000 6408900 6821000 0 0 0 0 3794000 0 0 0 0 5694000 5207300 6079500 0 0 0 10869 549 10581 203581;203582;203583;203584;203585;203586;203587;203588;203589;203590 125582;125583 125582 2 KDYISIDSPMAR Unmodified 1394.6864 0.68640036 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 26.773 25.675 3 7.3177E-06 8478 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 104.24 101.29 145040000 0 0 2392100 0 0 0 0 0 0 12541000 10684000 14157000 0 0 0 29102000 27497000 28586000 0 0 0 6482900 6327500 7274400 10870 1338 10582 203591;203592;203593;203594;203595;203596;203597;203598;203599;203600 125584;125585;125586;125587;125588;125589;125590 125584 7 KEAAPAAAPAAAAAK Unmodified 1307.7197 0.7197494 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 11.431 12.031 2;3 2.5273E-35 2503 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 252.37 242.59 11249000000 503440000 434240000 419130000 529010000 584120000 480190000 629260000 698600000 661540000 93795000 80472000 73516000 438390000 454410000 424270000 39005000 28745000 27705000 757540000 683270000 710690000 851630000 789140000 856580000 10871 133 10583 203601;203602;203603;203604;203605;203606;203607;203608;203609;203610;203611;203612;203613;203614;203615;203616;203617;203618;203619;203620;203621;203622;203623;203624;203625;203626;203627;203628;203629;203630;203631;203632;203633;203634;203635;203636;203637;203638;203639;203640;203641;203642;203643;203644;203645;203646;203647;203648;203649 125591;125592;125593;125594;125595;125596;125597;125598;125599;125600;125601;125602;125603;125604;125605;125606;125607;125608;125609;125610;125611;125612;125613;125614;125615;125616;125617;125618;125619;125620;125621;125622;125623 125604 32 KEAAPAAAPAAAAAKDVNVPDIGSDEVEVTEILVK Unmodified 3458.8144 0.81444423 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 2 46.237 44.555 3;4;5 3.1958E-19 17594 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 147.27 145.63 372520000 0 0 0 66144000 69651000 58769000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65357000 55467000 57136000 10872 133 10584 203650;203651;203652;203653;203654;203655;203656;203657;203658;203659;203660;203661;203662;203663;203664;203665 125624;125625;125626;125627;125628;125629;125630;125631;125632;125633;125634;125635;125636;125637;125638;125639;125640 125627 17 KEAAPAK Unmodified 713.40719 0.40718903 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 6.3296 6.9815 2 0.00062775 771 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 152.47 83.377 292310000 42465000 55595000 35469000 1630400 1487300 2261000 0 0 0 3172600 3061900 2390200 21702000 19557000 20612000 0 454890 0 25058000 22104000 24921000 4582700 2564500 3226300 10873 548 10585 203666;203667;203668;203669;203670;203671;203672;203673;203674;203675;203676;203677;203678;203679;203680;203681;203682;203683;203684;203685;203686 125641;125642;125643;125644;125645;125646;125647;125648;125649;125650;125651 125651 11 KEAAPAKAEK Unmodified 1041.5819 0.58185893 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 7.3865 7.8975 2 0.001342 726 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 110.39 42.49 30424000 0 0 0 4118300 4685900 4612900 0 0 0 3247700 2643700 3089100 0 0 0 0 0 0 0 0 0 3734000 2220600 2071900 10874 548 10586 203687;203688;203689;203690;203691;203692;203693;203694;203695 125652;125653;125654;125655;125656;125657;125658 125658 7 KEDELPFHVVAYDFGAK Unmodified 1963.968 0.96797818 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 1 3 1 1 2 3 2 39.657 38.077 2;3;4 3.528E-20 18594 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 202.63 184.96 2391000000 652910000 554780000 553310000 0 1167300 1485200 6135600 4592800 0 0 0 0 45136000 22543000 22440000 0 0 0 178320000 187860000 160310000 0 0 0 10875 238 10587 203696;203697;203698;203699;203700;203701;203702;203703;203704;203705;203706;203707;203708;203709;203710;203711;203712;203713;203714;203715;203716;203717;203718;203719;203720 125659;125660;125661;125662;125663;125664;125665;125666;125667;125668;125669;125670;125671;125672;125673 125664 11 KEDNELR Unmodified 902.44576 0.44575938 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 5.8393 6.6731 2 0.0010745 1345 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143 88.799 254130000 52967000 65551000 48581000 0 0 0 0 0 0 0 0 0 12861000 13129000 13297000 0 0 0 16532000 18183000 13024000 0 0 0 10876 887 10588 203721;203722;203723;203724;203725;203726;203727;203728;203729;203730;203731 125674;125675;125676;125677;125678;125679;125680;125681 125674 8 KEEDAAVEDLLAEVSQPK Unmodified 1969.9844 0.9844161 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 46.115 44.694 2;3 2.3433E-45 21695 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 266.17 251.13 267560000 90885000 81212000 74925000 1967900 1111800 1257300 3562000 0 0 0 0 0 2336000 2747900 2503800 0 0 0 0 5055600 0 0 0 0 10877 1173 10589 203732;203733;203734;203735;203736;203737;203738;203739;203740;203741;203742;203743;203744;203745 125682;125683;125684;125685;125686;125687 125687 6 KEELLTTQEELQK Unmodified 1587.8356 0.83556702 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 19.611 19.908 2;3 2.9469E-31 7880 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 295.32 247.04 1193700000 162580000 156910000 151420000 10780000 9432500 10491000 72053000 80400000 74860000 47684000 37732000 38221000 48497000 45291000 46572000 2213200 2725700 1824900 63722000 66162000 55609000 2321900 2506200 3638900 10878 982 10590 203746;203747;203748;203749;203750;203751;203752;203753;203754;203755;203756;203757;203758;203759;203760;203761;203762;203763;203764;203765;203766;203767;203768;203769;203770;203771;203772;203773;203774;203775;203776;203777;203778;203779;203780;203781;203782;203783;203784;203785;203786;203787;203788 125688;125689;125690;125691;125692;125693;125694;125695;125696;125697;125698;125699;125700;125701;125702;125703;125704;125705;125706;125707;125708;125709;125710;125711;125712;125713;125714;125715;125716;125717;125718;125719 125697 32 KEEVVGAEMMR Unmodified 1277.6108 0.61079258 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 17.546 17.959 2;3 1.979E-19 5223 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 226.09 215.57 1331300000 61282000 58237000 59808000 9610900 2556200 2384700 86036000 80530000 77296000 76009000 65220000 68795000 61194000 21943000 62951000 56446000 45462000 47475000 90998000 81924000 80226000 48312000 43429000 43215000 10879 1057 10591 203789;203790;203791;203792;203793;203794;203795;203796;203797;203798;203799;203800;203801;203802;203803;203804;203805;203806;203807;203808;203809;203810;203811;203812;203813;203814;203815;203816;203817;203818;203819;203820;203821;203822;203823;203824;203825;203826;203827;203828;203829;203830;203831;203832;203833 125720;125721;125722;125723;125724;125725;125726;125727;125728;125729;125730;125731;125732;125733;125734 125725 13 KEGAFVPFVTLGDPGIEQSLK Unmodified 2231.1838 0.18378461 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 2 2 2 2 2 2 49.575 48.198 2;3 3.098E-35 23665 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 224.15 218.43 907460000 195280000 199060000 172000000 3144000 4388400 2890800 49072000 32350000 29453000 0 0 0 38180000 30723000 25977000 0 0 0 48292000 35430000 41220000 0 0 0 10880 404 10592 203834;203835;203836;203837;203838;203839;203840;203841;203842;203843;203844;203845;203846;203847;203848;203849;203850;203851;203852;203853;203854;203855;203856;203857;203858;203859 125735;125736;125737;125738;125739;125740;125741;125742;125743;125744;125745;125746;125747;125748;125749 125743 15 KEGATVLDHSGAPLDEK Unmodified 1765.8846 0.88464248 1473 P37595 iaaA Isoaspartyl peptidase;Isoaspartyl peptidase subunit alpha;Isoaspartyl peptidase subunit beta yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.371 16.179 3 0.0021718 5163 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 50.831 42.654 92617000 10171000 6849200 8332300 0 0 0 9578800 6298000 12718000 0 0 0 6198800 5616300 4462300 0 0 0 8474900 6809100 7108500 0 0 0 10881 1473 10593 203860;203861;203862;203863;203864;203865;203866;203867;203868;203869;203870;203871 125750;125751 125751 2 KEGNTLVIVTADHAHASQIVAPDTK Unmodified 2614.3715 0.37147881 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 2 2 2 2 2 2 1 24.114 23.124 3;4 3.6057E-22 9745 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 166.79 159.83 673310000 0 0 0 0 706470 0 51400000 39300000 50618000 0 1660500 0 81399000 81541000 86782000 0 0 0 93233000 92469000 92730000 0 1472400 0 10882 38 10594 203872;203873;203874;203875;203876;203877;203878;203879;203880;203881;203882;203883;203884;203885;203886;203887;203888;203889;203890;203891;203892 125752;125753;125754;125755;125756;125757;125758;125759 125756 8 KEGVNSTESGLQFR Unmodified 1550.7689 0.76888444 533 P0A9L3 fklB FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.954 17.702 2 1.9619E-19 6463 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 252.96 225.63 126590000 9317000 6951800 5557100 0 0 0 12648000 13398000 14050000 0 0 0 8750400 8125800 8001300 0 0 0 15113000 11795000 12879000 0 0 0 10883 533 10595 203893;203894;203895;203896;203897;203898;203899;203900;203901;203902;203903;203904 125760;125761;125762;125763;125764;125765;125766;125767 125762 8 KEHPLHCAGSFK Unmodified 1409.6874 0.68740341 304 P0A729 yceF Maf-like protein YceF yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 10.616 11.269 2 0.011613 2675 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.184 80.124 32938000 7814200 0 5312600 0 0 0 4806800 4916900 4212400 0 0 0 0 0 0 1338200 0 0 0 4537300 0 0 0 0 10884 304 10596 203905;203906;203907;203908;203909;203910;203911 125768 125768 0 KEIAEIASK Unmodified 987.56006 0.56006086 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.017 12.614 2 0.00012135 2913 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 136.96 86.832 117900000 4065600 0 0 1457800 1268200 1365600 7689500 9427800 7522400 9196200 7414900 7104400 7561700 11627000 10061000 4099900 3452900 0 0 0 9931400 5256600 4657000 4740700 10885 1781 10597 203912;203913;203914;203915;203916;203917;203918;203919;203920;203921;203922;203923;203924;203925;203926;203927;203928;203929;203930 125769;125770;125771;125772 125770 4 KEIDEYFAHVWQTMQACIDR Unmodified 2539.1624 0.16241402 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 1 1 1 2 1 1 1 1 2 1 2 2 2 52.283 51.102 3;4 5.5283E-05 24747 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 78.354 76.653 212700000 14126000 7838300 8360300 0 0 2204600 26807000 3200200 12411000 0 0 0 10050000 10979000 16593000 0 0 2856300 32582000 33045000 31650000 0 0 0 10886 1117 10598 203931;203932;203933;203934;203935;203936;203937;203938;203939;203940;203941;203942;203943;203944;203945;203946;203947;203948;203949;203950 125773;125774;125775 125774 2 KEIEIYK Unmodified 921.51713 0.51713341 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.83 13.695 2 0.0091789 4077 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.783 76.562 164270000 8524100 0 0 0 0 0 15404000 14268000 17970000 0 0 0 19078000 17587000 15496000 0 0 0 20146000 18361000 17433000 0 0 0 10887 192 10599 203951;203952;203953;203954;203955;203956;203957;203958;203959;203960 125776;125777;125778;125779;125780;125781;125782;125783;125784 125778 9 KEIGPLATPDVLHWTDSLPK Unmodified 2216.1841 0.18411896 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 3 3 3 1 1 1 1 1 1 1 45.229 43.862 2;3;4 3.3423E-30 21479 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 252.38 247.95 1563000000 568400000 526350000 440890000 0 1394300 1077100 3617100 0 4097400 0 0 0 0 0 1925900 0 0 0 3908300 11384000 0 0 0 0 10888 1305 10600 203961;203962;203963;203964;203965;203966;203967;203968;203969;203970;203971;203972;203973;203974;203975;203976 125785;125786;125787;125788;125789;125790;125791;125792;125793 125787 9 KEIPDEVHVDPYLCTYYYEINNQKPPFNDVR Unmodified 3854.825 0.82502569 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 43.205 41.857 4;5 1.9831E-25 20482 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 178.91 178.89 298630000 112350000 97542000 83157000 0 0 0 0 0 0 0 0 0 2770100 0 0 0 0 0 0 2806900 0 0 0 0 10889 1217 10601 203977;203978;203979;203980;203981;203982;203983;203984 125794;125795;125796;125797;125798;125799 125795 6 KEIPQWFIK Unmodified 1187.6703 0.67028001 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.906 29.55 3 0.00060517 13763 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 76.679 68.792 90773000 6502000 6761500 6574400 0 0 0 9704200 6445500 8428500 0 0 0 6557900 5760100 4204700 0 0 0 8959700 10351000 10523000 0 0 0 10890 170 10602 203985;203986;203987;203988;203989;203990;203991;203992;203993;203994;203995;203996 125800;125801;125802;125803;125804;125805;125806 125803 7 KELAGVAGCAVAIAPPEMYIDMAK Unmodified 2504.2477 0.24772355 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.309 45.92 3 0.16876 21373 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 11.785 8.191 154980000 16462000 9137900 9314400 0 0 0 21416000 16620000 16457000 0 0 0 10379000 11181000 9532900 0 0 0 11894000 10101000 12486000 0 0 0 10891 399 10603 203997;203998;203999;204000;204001;204002;204003;204004;204005;204006;204007;204008 125807 125807 1 KELANAIR Unmodified 913.53451 0.53451481 1299 P27302 tktA Transketolase 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 13.745 14.31 2 0.0057421 3064 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 88.029 56.093 541210000 3014600 27005000 25670000 0 0 0 0 72193000 73070000 2282800 0 2091800 0 53972000 58609000 0 6685200 3966100 70347000 74290000 64493000 0 1692200 1828900 10892 1299 10604 204009;204010;204011;204012;204013;204014;204015;204016;204017;204018;204019;204020;204021;204022;204023;204024;204025;204026 125808;125809;125810;125811;125812 125812 5 KELLGQLLLDEIVTR Unmodified 1739.0193 0.019285464 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.137 51.71 3 2.5497E-09 24437 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 152.34 152.08 243770000 17937000 16725000 14237000 577010 564310 0 19779000 19501000 19073000 0 687400 1385200 18427000 20931000 19445000 0 0 0 21206000 22528000 28985000 0 1779200 0 10893 670 10605 204027;204028;204029;204030;204031;204032;204033;204034;204035;204036;204037;204038;204039;204040;204041;204042;204043 125813;125814;125815;125816;125817;125818;125819;125820;125821;125822;125823;125824 125822 12 KEMVEANLR Oxidation (M) 1104.5597 0.55974328 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 12.005 12.141 2;3 0.0074856 2658 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 64.191 49.429 68906000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14482000 17978000 13456000 0 0 6297700 0 0 16693000 10894 36 10606 204044;204045;204046;204047;204048;204049;204050;204051 125825;125826;125827;125828 125828 14 4 KEMVEANLR Unmodified 1088.5648 0.56482866 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 2 1 2 2 2 1 1 1 1 1 1 13.527 13.893 2;3 4.9607E-11 3278 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 206.09 121.85 1279300000 0 5688000 7886100 0 0 0 0 0 0 0 1757200 0 0 0 0 421510000 423790000 386580000 8953500 9202800 8319900 2170100 1826600 1568900 10895 36 10606 204052;204053;204054;204055;204056;204057;204058;204059;204060;204061;204062;204063;204064;204065;204066;204067 125829;125830;125831;125832;125833;125834 125832 5 KENIIAAAQAGASGYVVKPFTAATLEEK Unmodified 2876.5284 0.52837339 837 P0AE67 cheY Chemotaxis protein CheY yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 40.643 39.138 3;4 7.3956E-16 18922 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.74 139.36 214840000 76729000 71675000 61213000 2695000 0 2523500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10896 837 10607 204068;204069;204070;204071;204072;204073;204074;204075 125835;125836;125837;125838;125839 125839 5 KENNLGADVVLR Unmodified 1326.7256 0.72556306 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 2 2 1 2 2 2 21.027 21.317 2;3 2.575E-08 8719 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 203.03 159.85 1287700000 71955000 106280000 126470000 0 0 0 151940000 119460000 42739000 0 0 0 158720000 143220000 29301000 0 0 0 78748000 175400000 83442000 0 0 0 10897 158 10608 204076;204077;204078;204079;204080;204081;204082;204083;204084;204085;204086;204087;204088;204089;204090;204091;204092;204093;204094;204095;204096 125840;125841;125842;125843;125844;125845;125846;125847;125848;125849;125850;125851;125852;125853;125854;125855 125842 14 KEQAINYLK Unmodified 1105.6132 0.61315906 117 P05719 hsdS Type-1 restriction enzyme EcoKI specificity protein yes yes 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 15.975 16.781 2 0.099733 5896 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 52.716 15.158 51547000 0 0 0 0 0 0 14029000 15579000 18462000 0 0 0 0 1551400 1926100 0 0 0 0 0 0 0 0 0 10898 117 10609 204097;204098;204099;204100;204101 125856 125856 1 KETLGDVTHR Unmodified 1154.6044 0.60438529 39 P00803 lepB Signal peptidase I yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.396 11.999 3 0.025356 2583 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 40.727 34.694 170430000 4188900 0 2517400 1843300 3247600 2109900 12685000 43904000 34245000 7205300 6764700 4453400 13351000 0 19533000 0 0 2564700 0 0 0 4150600 3313900 4356600 10899 39 10610 204102;204103;204104;204105;204106;204107;204108;204109;204110;204111;204112;204113;204114;204115;204116;204117;204118 125857;125858 125857 0 KEVINQR Unmodified 885.50321 0.50321468 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 1 By MS/MS By matching 1 1 7.1327 8.0108 2 0.16496 1714 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 48.115 27.416 7046000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3471100 3575000 0 0 0 10900 1718 10611 204119;204120 125859 125859 1 KEVVEWLR Unmodified 1057.592 0.59202969 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 24.378 23.428 2;3 0.00050031 10045 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.43 86.764 1420000000 128790000 144540000 130380000 0 0 0 142300000 160630000 134140000 540070 0 0 53877000 79333000 85999000 0 0 0 121490000 125370000 112660000 0 0 0 10901 635 10612 204121;204122;204123;204124;204125;204126;204127;204128;204129;204130;204131;204132;204133;204134;204135;204136;204137;204138;204139;204140;204141;204142;204143;204144;204145 125860;125861;125862;125863;125864;125865;125866;125867;125868;125869;125870;125871;125872;125873;125874;125875;125876;125877;125878;125879;125880;125881 125875 22 KEYAEVFEGTAEWK Unmodified 1685.7937 0.7937022 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 31.2 30.061 2 1.7839E-08 14091 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.81 148.91 28503000 9974200 10541000 7988200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10902 1254 10613 204146;204147;204148 125882 125882 1 KEYCDLLR Unmodified 1095.5383 0.53827956 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 1 18.481 19.09 2;3 3.9045E-06 7188 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 180.87 171.35 882750000 67249000 70822000 59739000 0 0 373850 62008000 64810000 70772000 0 0 0 97134000 87871000 81784000 0 0 0 89524000 85024000 45641000 0 0 0 10903 86 10614 204149;204150;204151;204152;204153;204154;204155;204156;204157;204158;204159;204160;204161;204162;204163;204164;204165;204166;204167;204168;204169;204170;204171;204172 125883;125884;125885;125886;125887;125888;125889;125890;125891;125892;125893;125894 125885 6 KFAIDQEK Unmodified 977.5182 0.51819605 402 P0A870 talB Transaldolase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.416 13.248 2 0.00021515 3787 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.49 100.93 3235500000 209860000 144630000 143710000 0 0 0 331060000 314910000 347680000 0 0 0 312450000 299750000 271410000 0 0 0 310280000 295420000 254320000 0 0 0 10904 402 10615 204173;204174;204175;204176;204177;204178;204179;204180;204181;204182;204183;204184 125895;125896;125897;125898;125899;125900;125901;125902;125903;125904;125905;125906 125896 12 KFAIDQEKLEK Unmodified 1347.7398 0.73981614 402 P0A870 talB Transaldolase B yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 1 15.16 15.987 2;3 1.5989E-07 5397 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 145.14 140.62 553520000 36194000 40392000 40832000 1078400 986120 1191300 59422000 54879000 60213000 0 0 0 34376000 31671000 40115000 0 0 0 52313000 57008000 42844000 0 0 0 10905 402 10616 204185;204186;204187;204188;204189;204190;204191;204192;204193;204194;204195;204196;204197;204198;204199;204200;204201;204202;204203;204204;204205;204206;204207;204208;204209;204210 125907;125908;125909;125910;125911;125912;125913;125914;125915;125916;125917;125918;125919;125920 125909 14 KFDLVITAK Unmodified 1033.6172 0.61718181 1536 P39401 mdoB Phosphoglycerol transferase I yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.551 25.257 2 0.062306 11364 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 54.191 38.047 55485000 0 0 0 0 403440 297830 8040100 5226300 6349800 0 1010400 0 0 4224100 4175100 0 0 0 7163600 9185000 5579400 1073400 1470500 1286300 10906 1536 10617 204211;204212;204213;204214;204215;204216;204217;204218;204219;204220;204221;204222;204223;204224 125921 125921 1 KFDPVVR Unmodified 859.49159 0.49158736 360 P0A7N9 rpmG 50S ribosomal protein L33 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.783 14.381 2 0.001363 4511 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.89 111.06 4500600000 413210000 475540000 432720000 18758000 20311000 24123000 232350000 187650000 197050000 39068000 30172000 26371000 307750000 263190000 242640000 13542000 11074000 11697000 483740000 534290000 440410000 30332000 35357000 29273000 10907 360 10618 204225;204226;204227;204228;204229;204230;204231;204232;204233;204234;204235;204236;204237;204238;204239;204240;204241;204242;204243;204244;204245;204246;204247;204248 125922;125923;125924;125925;125926;125927;125928;125929;125930;125931;125932;125933;125934;125935;125936;125937;125938;125939;125940 125937 19 KFEELVQTR Unmodified 1148.619 0.61897272 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 2 1 2 3 2 2 2 2 2 2 2 1 1 1 2 3 2 2 2 2 17.311 17.819 2;3 4.191E-06 5212 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 175.91 158.67 11719000000 888000000 954290000 854300000 10232000 19419000 5836100 1250200000 1226800000 1053600000 143450000 125770000 130380000 686230000 602320000 620910000 3453600 3607600 4653400 1051400000 1043700000 939800000 34036000 36596000 29642000 10908 293 10619 204249;204250;204251;204252;204253;204254;204255;204256;204257;204258;204259;204260;204261;204262;204263;204264;204265;204266;204267;204268;204269;204270;204271;204272;204273;204274;204275;204276;204277;204278;204279;204280;204281;204282;204283;204284;204285;204286;204287;204288;204289;204290;204291;204292;204293;204294;204295 125941;125942;125943;125944;125945;125946;125947;125948;125949;125950;125951;125952;125953;125954;125955;125956;125957;125958;125959;125960;125961;125962;125963;125964;125965;125966;125967;125968;125969;125970;125971;125972;125973;125974;125975;125976;125977;125978;125979;125980;125981;125982 125948 42 KFENPVYWGVDLSSEHER Unmodified 2191.0334 0.033431979 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 35.749 34.172 3;4 1.8817E-22 16399 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 183.6 181.68 1638600000 193700000 206290000 178900000 0 1010700 0 108080000 110740000 109310000 0 0 0 84768000 83752000 74875000 0 0 0 155430000 163110000 166800000 0 1848700 0 10909 444 10620 204296;204297;204298;204299;204300;204301;204302;204303;204304;204305;204306;204307;204308;204309;204310;204311;204312;204313;204314;204315;204316;204317;204318;204319;204320;204321 125983;125984;125985;125986;125987;125988;125989;125990;125991;125992;125993;125994;125995;125996;125997;125998;125999;126000;126001;126002;126003;126004;126005;126006 125989 24 KFFADMHR Unmodified 1050.5069 0.50691985 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.81 14.663 2;3 0.00066458 4567 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.06 122.42 212670000 14700000 19581000 18787000 0 0 0 22993000 20383000 21378000 0 0 0 12721000 17820000 0 0 0 0 19329000 23552000 21425000 0 0 0 10910 1505 10621 204322;204323;204324;204325;204326;204327;204328;204329;204330;204331;204332;204333;204334 126007;126008;126009;126010;126011;126012;126013 126009 7 KFFASVAG Unmodified 825.43849 0.43848916 1846 P76270 msrC Free methionine-R-sulfoxide reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 24.816 23.806 2 0.056666 10892 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 60.788 38.335 123180000 13548000 13252000 10549000 0 0 0 11076000 12178000 9821400 0 0 0 0 6744800 5074100 0 0 0 14135000 14997000 11808000 0 0 0 10911 1846 10622 204335;204336;204337;204338;204339;204340;204341;204342;204343;204344;204345 126014;126015;126016;126017;126018;126019;126020;126021;126022;126023 126015 10 KFFDICR Unmodified 984.48512 0.48512178 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 24.307 23.003 2 0.0019096 8159 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 128.48 123 3004000000 0 0 0 0 0 0 22188000 20756000 26116000 1094900000 941780000 888300000 0 0 0 0 0 0 0 0 0 4493900 5455300 0 10912 497 10623 204346;204347;204348;204349;204350;204351;204352;204353 126024;126025;126026;126027 126025 4 KFFPGYVLVQMVMNDASWHLVR Unmodified 2636.3396 0.33959052 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 4 4 3 1 1 1 3 3 3 55.115 53.827 2;3;4 6.5744E-43 21635 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 254.53 237.04 16496000000 0 0 0 8271900 8731100 4817000 0 0 0 3950500000 3452100000 2442500000 0 0 0 364600000 635410000 638370000 0 0 0 1491800000 1714500000 1784800000 10913 936 10624 204354;204355;204356;204357;204358;204359;204360;204361;204362;204363;204364;204365;204366;204367;204368;204369;204370;204371;204372;204373;204374;204375;204376;204377;204378;204379;204380;204381 126028;126029;126030;126031;126032;126033;126034;126035;126036;126037;126038;126039;126040;126041 126033 11 KFFPGYVLVQMVMNDASWHLVR Oxidation (M) 2652.3345 0.33450514 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 2 1 2 3 3 53.997 52.822 3;4 3.9994E-10 21418 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 118.16 108.57 888860000 0 0 0 0 0 0 0 0 0 205540000 212780000 227140000 0 0 0 7215300 28794000 9409900 0 0 0 67698000 59723000 70557000 10914 936 10624 204382;204383;204384;204385;204386;204387;204388;204389;204390;204391;204392;204393;204394;204395;204396;204397;204398;204399;204400;204401;204402 126042;126043;126044;126045;126046;126047;126048;126049;126050;126051;126052;126053 126044 425;426 10 KFFPGYVLVQMVMNDASWHLVR 2 Oxidation (M) 2668.3294 0.32941976 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 2 1 By MS/MS By matching By MS/MS By matching By matching By matching 2 2 1 1 1 1 53.524 52.032 4 0.00063676 19924 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 64.723 60.996 58669000 0 0 0 0 0 0 0 0 0 18811000 18424000 5535600 0 0 0 0 0 0 0 0 0 5566000 4623100 5709000 10915 936 10624 204403;204404;204405;204406;204407;204408;204409;204410 126054;126055 126055 425;426 2 KFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQK Unmodified 4344.2134 0.21339354 211 P09372 grpE Protein GrpE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.353 52.913 4 2.3749E-19 25816 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.38 127.14 1371900000 121390000 98167000 101310000 0 4627600 4768900 107530000 109540000 92016000 20440000 20203000 0 99825000 86775000 88302000 0 0 0 138050000 155790000 116850000 0 0 6294600 10916 211 10625 204411;204412;204413;204414;204415;204416;204417;204418;204419;204420;204421;204422;204423;204424;204425;204426;204427 126056;126057;126058;126059;126060;126061;126062;126063;126064;126065;126066;126067 126061 12 KFIIADTPGHEQYTR Unmodified 1774.9002 0.90023296 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 19.305 19.813 3 0.0050907 7955 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 55.851 44.619 153860000 0 10240000 0 0 0 0 11611000 6757600 10561000 0 0 0 12693000 14477000 11857000 0 0 0 25843000 24417000 25406000 0 0 0 10917 1218 10626 204428;204429;204430;204431;204432;204433;204434;204435;204436;204437 126068;126069;126070 126068 3 KFIKPAELLGWVDQTSLK Unmodified 2072.167 0.16701233 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.219 43.626 4 0.005925 21621 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 45.257 42.248 83817000 8010200 6783600 4944400 1464800 1530600 1463000 7775900 7383400 6988100 1960100 0 0 3814300 4171000 4951500 0 0 0 5586800 8079900 5395700 1362800 1064300 1086900 10918 1146 10627 204438;204439;204440;204441;204442;204443;204444;204445;204446;204447;204448;204449;204450;204451;204452;204453;204454;204455;204456 126071 126071 1 KFISIEAE Unmodified 935.4964 0.49639797 355 P0A7L8 rpmA 50S ribosomal protein L27 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 1 1 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 2 26.581 25.532 1;2 0.0011647 9452 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 117.16 115.83 1712500000 243050000 221010000 201060000 11785000 8516600 8986100 9052800 10109000 7769600 17477000 14621000 20252000 101460000 98554000 96287000 17788000 12405000 12840000 181770000 185360000 173750000 18257000 17699000 22686000 10919 355 10628 204457;204458;204459;204460;204461;204462;204463;204464;204465;204466;204467;204468;204469;204470;204471;204472;204473;204474;204475;204476;204477;204478;204479;204480;204481;204482;204483;204484;204485;204486;204487;204488;204489;204490;204491;204492;204493;204494;204495;204496;204497 126072;126073;126074;126075;126076;126077;126078;126079;126080;126081;126082 126074 10 KFLMNSQWRPDR Unmodified 1576.7933 0.79326547 716 P0ACB4 hemG Protoporphyrinogen IX dehydrogenase [menaquinone] yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 22.07 21.691 3 0.01499 7296 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 44.616 37.887 25625000 0 0 0 1156600 1044700 1122200 0 0 0 5738900 4324200 3590400 0 0 0 0 0 0 1503500 1819000 0 1572600 2374200 1378000 10920 716 10629 204498;204499;204500;204501;204502;204503;204504;204505;204506;204507;204508 126083 126083 1 KFNLMLETK Unmodified 1122.6107 0.61071622 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 25.8 24.636 2;3 6.2575E-08 9157 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 193.38 175.99 6803300000 383960000 396460000 312220000 245010000 267870000 281740000 335440000 328380000 330130000 70248000 73313000 74581000 290640000 213450000 222670000 4982600 6271300 5847100 402630000 376750000 387320000 664530000 594330000 534550000 10921 542 10630 204509;204510;204511;204512;204513;204514;204515;204516;204517;204518;204519;204520;204521;204522;204523;204524;204525;204526;204527;204528;204529;204530;204531;204532;204533;204534;204535;204536;204537;204538;204539;204540;204541;204542;204543;204544;204545;204546;204547;204548;204549;204550 126084;126085;126086;126087;126088;126089;126090;126091;126092;126093;126094;126095;126096;126097;126098;126099;126100;126101;126102;126103;126104;126105;126106;126107;126108;126109;126110;126111;126112;126113;126114;126115;126116;126117;126118;126119;126120;126121;126122;126123;126124;126125;126126;126127;126128;126129 126088 46 KFNLMLETK Oxidation (M) 1138.6056 0.60563084 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 7 7 9 3 2 2 2 3 5 1 2 4 2 2 2 6 5 6 23.304 22.76 2;3 1.2818E-05 6608 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 174.41 127.98 655960000 12628000 12886000 13066000 96799000 90596000 82514000 26690000 21539000 20669000 6178100 7746000 12842000 3725300 8667400 12626000 0 0 0 5873100 15390000 14817000 77829000 59261000 53617000 10922 542 10630 204551;204552;204553;204554;204555;204556;204557;204558;204559;204560;204561;204562;204563;204564;204565;204566;204567;204568;204569;204570;204571;204572;204573;204574;204575;204576;204577;204578;204579;204580;204581;204582;204583;204584;204585;204586;204587;204588;204589;204590;204591;204592;204593;204594;204595;204596;204597;204598;204599;204600;204601;204602;204603;204604;204605;204606;204607;204608;204609;204610;204611;204612;204613;204614;204615;204616;204617;204618;204619;204620;204621;204622;204623;204624;204625;204626;204627 126130;126131;126132;126133;126134;126135;126136;126137;126138;126139;126140;126141;126142;126143;126144;126145;126146;126147;126148;126149;126150;126151;126152;126153;126154;126155;126156;126157;126158;126159 126142 326 28 KFNQLATEIDNTVVLCISADLPFAQSR Unmodified 3049.5543 0.55427056 400 P0A862 tpx Thiol peroxidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 54.756 53.319 3 1.3062E-53 26426 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 244.98 242.87 2044700000 192610000 168270000 190120000 5850400 0 0 191160000 160160000 147840000 0 0 0 129490000 144870000 144630000 0 0 0 198800000 183750000 187190000 0 0 0 10923 400 10631 204628;204629;204630;204631;204632;204633;204634;204635;204636;204637;204638;204639;204640 126160;126161;126162;126163;126164;126165;126166;126167;126168;126169;126170;126171 126161 12 KFQLAENIHVR Unmodified 1353.7517 0.75171823 1033 P0C054 ibpA Small heat shock protein IbpA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 20.452 20.48 3 7.2106E-06 6589 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 141.1 127.29 106010000 0 0 0 9928000 8412900 7349700 9807400 0 2870900 27698000 20427000 19518000 0 0 0 0 0 0 0 0 0 0 0 0 10924 1033 10632 204641;204642;204643;204644;204645;204646;204647;204648;204649 126172;126173;126174;126175;126176;126177 126173 5 KFQYGQHTVTLETGMMAR Unmodified 2097.0136 0.013564934 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 1 1 2 2 1 1 2 2 2 25.712 24.607 3;4 5.2099E-07 10986 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.2 99.486 473490000 27225000 30085000 29833000 4993000 4466500 2914400 50318000 22173000 43045000 2129100 2417900 0 39780000 36790000 15636000 0 1739700 0 54616000 52340000 52990000 0 0 0 10925 107 10633 204650;204651;204652;204653;204654;204655;204656;204657;204658;204659;204660;204661;204662;204663;204664;204665;204666;204667;204668;204669;204670;204671;204672;204673;204674;204675;204676;204677 126178;126179;126180;126181;126182;126183;126184;126185;126186 126179 6 KFSEEAASWMQEQR Unmodified 1725.7781 0.77806891 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 26.528 25.516 2;3 7.614E-45 11872 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 325.79 325.79 835860000 73318000 73999000 65247000 0 0 0 73685000 66118000 74514000 0 1075600 1519900 64319000 57900000 51754000 1381800 915220 697040 79811000 74138000 75470000 0 0 0 10926 688 10634 204678;204679;204680;204681;204682;204683;204684;204685;204686;204687;204688;204689;204690;204691;204692;204693;204694;204695;204696;204697;204698;204699;204700;204701;204702;204703;204704;204705;204706 126187;126188;126189;126190;126191;126192;126193;126194;126195;126196;126197;126198;126199;126200;126201;126202 126187 15 KFSEVCVGHLGK Unmodified 1359.6969 0.69690547 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 15.909 16.416 2;3 2.7E-05 5586 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.17 117.82 548640000 3040300 2781400 3142500 3292300 2788900 103800 45546000 58544000 51885000 13513000 15853000 15745000 6242700 6538200 3993300 3107300 3463700 2080000 56213000 46652000 46648000 44057000 56691000 56722000 10927 205 10635 204707;204708;204709;204710;204711;204712;204713;204714;204715;204716;204717;204718;204719;204720;204721;204722;204723;204724;204725;204726;204727;204728;204729;204730;204731;204732;204733;204734;204735;204736;204737;204738;204739;204740;204741;204742 126203;126204;126205;126206;126207;126208;126209;126210;126211;126212;126213;126214;126215;126216;126217;126218;126219 126216 16 KFTALGPYIR Unmodified 1164.6655 0.66552898 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 1 1 1 26.379 25.525 2;3 6.4856E-09 7871 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 192.6 187.62 2117700000 101920000 101930000 94122000 0 0 0 30440000 55575000 58471000 0 0 0 55804000 32373000 59399000 555920000 408070000 480970000 26280000 27691000 28707000 0 0 0 10928 1247 10636 204743;204744;204745;204746;204747;204748;204749;204750;204751;204752;204753;204754;204755;204756;204757;204758;204759;204760;204761;204762;204763;204764;204765;204766;204767 126220;126221;126222;126223;126224;126225;126226;126227;126228;126229;126230;126231;126232;126233;126234;126235;126236;126237;126238;126239;126240;126241;126242;126243;126244 126224 23 KFTGEVSLTGQPFVMEPSK Unmodified 2081.0503 0.050327596 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 1 1 1 2 2 2 37.353 35.874 2;3 3.4047E-55 17379 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 327.53 327.53 1434600000 108290000 108600000 104150000 0 0 0 149650000 145240000 148990000 0 0 0 103990000 18409000 93436000 3004400 1172900 1556500 145880000 153790000 148410000 0 0 0 10929 267 10637 204768;204769;204770;204771;204772;204773;204774;204775;204776;204777;204778;204779;204780;204781;204782;204783;204784;204785;204786;204787;204788;204789;204790;204791;204792;204793 126245;126246;126247;126248;126249;126250;126251;126252;126253;126254;126255;126256;126257;126258;126259;126260;126261;126262;126263;126264;126265 126251 20 KFTPESVSR Unmodified 1049.5506 0.55055881 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.355 12.993 2 0.0038973 3010 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 82.75 70.982 278710000 17136000 21375000 17497000 4951800 5645600 3474200 21534000 0 21313000 12424000 8972700 8659200 15670000 14696000 17344000 6487300 0 4221000 20108000 23778000 19189000 6008400 5090900 3135700 10930 1050 10638 204794;204795;204796;204797;204798;204799;204800;204801;204802;204803;204804;204805;204806;204807;204808;204809;204810;204811;204812;204813;204814;204815 126266;126267;126268 126266 3 KFVTAYLGDAGMLR Unmodified 1540.8072 0.8071842 1212 P23827 eco Ecotin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 2 36.83 35.013 2;3 3.9722E-06 17274 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.944 72.383 646140000 45127000 39787000 58450000 801130 665520 1140000 71021000 75229000 61841000 4657800 4397100 4402000 38442000 40686000 32212000 0 0 0 51564000 54194000 48557000 3737900 4260200 4965500 10931 1212 10639 204816;204817;204818;204819;204820;204821;204822;204823;204824;204825;204826;204827;204828;204829;204830;204831;204832;204833;204834;204835;204836;204837;204838;204839;204840;204841;204842 126269;126270;126271;126272;126273;126274;126275;126276;126277;126278;126279;126280;126281;126282;126283;126284;126285;126286;126287 126272 19 KGADVDLQAEK Unmodified 1172.6037 0.60371659 394 P0A843 tatE Sec-independent protein translocase protein TatE yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 2 2 1 1 1 1 1 1 1 2 2 1 2 1 1 1 2 1 1 12.109 12.785 2;3 0.00028103 3007 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 101.39 86.243 162300000 4342500 0 2474900 1969900 1641200 2480800 5314900 7137000 8717600 3844500 4393500 4149200 9963500 13454000 15711000 3384100 1478500 0 19614000 17983000 15375000 6241500 3931800 8702100 10932 394 10640 204843;204844;204845;204846;204847;204848;204849;204850;204851;204852;204853;204854;204855;204856;204857;204858;204859;204860;204861;204862;204863;204864;204865;204866;204867;204868;204869;204870;204871 126288;126289 126288 1 KGAELANSFKPDVIIALGGGSPMDAAK Unmodified 2656.3894 0.38943706 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 3 3 2 2 2 3 2 2 1 2 2 2 2 2 3 43.676 41.964 2;3;4 5.1687E-40 20941 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 252.1 235.96 4781400000 190590000 153140000 155380000 147340000 148470000 142490000 465910000 546800000 551820000 196100000 134520000 134140000 197070000 218240000 185910000 12572000 0 0 224710000 212650000 209470000 175250000 176850000 202030000 10933 548 10641 204872;204873;204874;204875;204876;204877;204878;204879;204880;204881;204882;204883;204884;204885;204886;204887;204888;204889;204890;204891;204892;204893;204894;204895;204896;204897;204898;204899;204900;204901;204902;204903;204904;204905;204906;204907;204908;204909;204910;204911;204912;204913;204914;204915;204916;204917;204918;204919 126290;126291;126292;126293;126294;126295;126296;126297;126298;126299;126300;126301;126302;126303;126304;126305;126306;126307;126308;126309;126310;126311;126312;126313;126314;126315;126316;126317;126318;126319;126320;126321;126322;126323;126324;126325;126326 126296 37 KGAIVTGK Unmodified 772.48069 0.48068833 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 7.7781 8.6366 2 0.00085977 1493 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 127.46 58.286 219230000 46914000 39486000 37837000 0 0 0 0 0 0 0 0 0 18737000 19999000 11731000 0 0 0 12148000 13276000 19106000 0 0 0 10934 990 10642 204920;204921;204922;204923;204924;204925;204926;204927;204928 126327;126328;126329;126330;126331;126332;126333;126334;126335 126335 9 KGALDLAGLPGK Unmodified 1138.671 0.67100829 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.332 24.989 3 0.00080194 11598 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 67.456 60.078 73819000 2870800 0 0 0 0 0 5601700 7921300 6491300 1523500 1988500 1971100 7791000 5923400 5026000 0 0 0 8632600 8297000 6514800 1303000 855980 1107500 10935 883 10643 204929;204930;204931;204932;204933;204934;204935;204936;204937;204938;204939;204940;204941;204942;204943;204944 126336;126337;126338;126339;126340;126341 126336 3 KGAQPSVPWR Unmodified 1124.6091 0.60907674 528 P0A9J6 rbsK Ribokinase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 1 2 2 1 1 1 2 2 16.52 17.293 2;3 0.017381 6383 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 63.216 45.181 126220000 14840000 5283600 4903100 0 0 0 7969800 6876500 15391000 0 0 0 17320000 8179900 4706800 0 0 0 6375800 18334000 16044000 0 0 0 10936 528 10644 204945;204946;204947;204948;204949;204950;204951;204952;204953;204954;204955;204956;204957;204958;204959;204960;204961 126342;126343;126344 126342 1 KGAVASLTSVAK Unmodified 1130.6659 0.66592292 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.544 15.323 2 0.0066217 4733 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 64.64 63.996 44613000 0 2790400 0 0 0 0 3518600 6013500 4132700 0 0 0 6231200 5489900 5939300 0 0 0 2977900 4074800 3444800 0 0 0 10937 1559 10645 204962;204963;204964;204965;204966;204967;204968;204969;204970;204971 126345 126345 1 KGAVSVLDNLSPIK Unmodified 1439.8348 0.83477916 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.749 33.301 2;3 9.5479E-11 15906 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 183.89 172.73 317620000 30396000 28508000 24973000 0 0 0 28422000 22731000 26876000 0 0 0 24408000 22671000 17790000 0 0 0 32373000 30729000 27748000 0 0 0 10938 1794 10646 204972;204973;204974;204975;204976;204977;204978;204979;204980;204981;204982;204983;204984;204985;204986;204987;204988;204989;204990;204991;204992;204993;204994;204995 126346;126347;126348;126349;126350;126351;126352;126353;126354;126355;126356;126357;126358;126359;126360;126361;126362;126363;126364;126365;126366;126367;126368 126352 22 KGCYTGQEMVAR Unmodified 1398.6384 0.63840431 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1 1 12.583 13.067 2;3 1.0775E-24 3874 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 248.14 237.11 201880000 53253000 54480000 86457000 0 0 0 0 0 0 984270 0 1695200 0 0 0 0 0 0 0 0 0 0 2302300 2706400 10939 784 10647 204996;204997;204998;204999;205000;205001;205002;205003 126369;126370;126371;126372 126369 4 KGDAAEGYHQSLIDITPQR Unmodified 2098.0443 0.044331016 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 2 2 2 2 2 1 2 1 2 2 2 2 2 2 24.697 23.603 3;4 8.2462E-08 10712 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.56 101.16 219540000 11101000 9172400 7682100 1768200 1760400 1339500 11368000 15036000 12401000 13537000 12143000 12284000 5099600 10379000 4290100 0 0 0 23099000 19645000 18192000 10359000 9230900 9653000 10940 1488 10648 205004;205005;205006;205007;205008;205009;205010;205011;205012;205013;205014;205015;205016;205017;205018;205019;205020;205021;205022;205023;205024;205025;205026;205027;205028;205029;205030;205031;205032;205033;205034;205035;205036 126373;126374;126375;126376 126374 4 KGDEIAAVVLQVDAER Unmodified 1711.9105 0.9104633 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 3 2 2 4 5 4 2 2 2 3 3 3 2 2 2 2 4 2 2 2 2 38.413 36.743 2;3 9.3309E-31 17536 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 238.88 228.56 3981600000 366400000 349790000 296870000 15154000 13514000 13803000 283550000 288540000 248350000 39811000 32127000 29752000 283190000 248490000 247280000 24751000 19687000 29203000 375370000 366430000 336880000 24122000 25897000 22627000 10941 990 10649 205037;205038;205039;205040;205041;205042;205043;205044;205045;205046;205047;205048;205049;205050;205051;205052;205053;205054;205055;205056;205057;205058;205059;205060;205061;205062;205063;205064;205065;205066;205067;205068;205069;205070;205071;205072;205073;205074;205075;205076;205077;205078;205079;205080;205081;205082;205083;205084;205085;205086;205087;205088;205089;205090;205091;205092;205093;205094;205095;205096;205097 126377;126378;126379;126380;126381;126382;126383;126384;126385;126386;126387;126388;126389;126390;126391;126392;126393;126394;126395;126396;126397;126398;126399;126400;126401;126402;126403;126404;126405;126406;126407;126408;126409;126410;126411;126412;126413;126414;126415;126416;126417;126418;126419;126420;126421;126422;126423;126424;126425;126426;126427;126428;126429;126430 126400 47 KGDEIAAVVLQVDAERER Unmodified 1997.0542 0.054167421 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 2 33.14 31.69 3;4 1.3308E-22 10906 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 177.64 167.68 362420000 0 0 0 4522600 4522300 29935000 0 0 0 51491000 0 60369000 0 0 0 54908000 39300000 41215000 0 0 0 10655000 11079000 54422000 10942 990 10650 205098;205099;205100;205101;205102;205103;205104;205105;205106;205107;205108;205109;205110 126431;126432;126433;126434;126435;126436;126437;126438;126439;126440 126440 9 KGDFSYVGR Unmodified 1027.5087 0.50869399 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.908 14.784 2 6.4152E-06 4390 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 173.48 148.66 2608500000 28811000 23961000 22941000 823830 0 0 230300000 217150000 201820000 0 0 0 211980000 236590000 185640000 0 0 0 431020000 396170000 421300000 0 0 0 10943 993 10651 205111;205112;205113;205114;205115;205116;205117;205118;205119;205120;205121;205122;205123 126441;126442 126442 2 KGDGFDLNDFLEQLR Unmodified 1765.8635 0.8635131 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.999 52.762 3 2.3819E-15 19927 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 189.09 183.88 211690000 13802000 7442400 6081800 3874000 4713300 5592900 5449700 5413800 6548600 13683000 16384000 9065200 10967000 7889100 5906700 8633500 9449100 16411000 14623000 0 11588000 7607300 12513000 8050900 10944 1009 10652 205124;205125;205126;205127;205128;205129;205130;205131;205132;205133;205134;205135;205136;205137;205138;205139;205140;205141;205142;205143;205144;205145;205146 126443;126444;126445;126446;126447;126448;126449;126450 126444 6 KGDIVGPIR Unmodified 953.56581 0.56581494 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.961 14.801 2 1.6435E-05 4836 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 162.49 129.88 1655300000 178390000 138150000 138550000 0 1401100 896100 164700000 156960000 143770000 0 0 0 110730000 109930000 94991000 0 0 928140 130880000 143250000 141830000 0 0 0 10945 688 10653 205147;205148;205149;205150;205151;205152;205153;205154;205155;205156;205157;205158;205159;205160;205161 126451;126452;126453;126454;126455;126456;126457;126458;126459;126460;126461;126462 126457 12 KGDLAAVAVK Unmodified 970.58113 0.58113065 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 13.234 14.153 1;2 0.00040672 4400 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.47 69.445 746860000 48794000 47642000 58808000 2282300 1938000 1171600 74813000 58548000 68300000 0 0 0 62432000 62173000 46867000 0 0 0 78567000 71616000 62903000 0 0 0 10946 1856 10654 205162;205163;205164;205165;205166;205167;205168;205169;205170;205171;205172;205173;205174;205175;205176;205177 126463;126464;126465;126466 126465 3 KGDPNYDIK Unmodified 1048.5189 0.51892433 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 11.426 12.288 2 7.8137E-05 3059 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 145.84 126.74 198150000 1789900 0 0 0 0 0 38683000 35697000 0 0 0 0 32172000 32817000 28124000 0 0 0 0 28863000 0 0 0 0 10947 1323 10655 205178;205179;205180;205181;205182;205183;205184 126467;126468;126469 126468 3 KGDPVYLK Unmodified 918.51747 0.51746776 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.267 13.079 2 0.0010761 3843 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.15 80.052 1519400000 398210000 350880000 339410000 0 0 0 101690000 79373000 87818000 0 0 0 17520000 0 14788000 0 0 0 46379000 44326000 39044000 0 0 0 10948 1254 10656 205185;205186;205187;205188;205189;205190;205191;205192;205193;205194;205195 126470;126471;126472 126470 3 KGDTLVQANLAK Unmodified 1256.7089 0.70885036 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 15.446 16.228 2 7.5315E-07 5681 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.95 130.63 48687000 5148400 5056800 5641400 0 0 0 4399200 5643200 6554900 0 0 0 3492800 2864300 0 0 0 0 0 5065900 4820000 0 0 0 10949 1155 10657 205196;205197;205198;205199;205200;205201;205202;205203;205204;205205 126473;126474;126475 126473 3 KGDVIIGANQQAVK Unmodified 1439.8096 0.80962704 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 1 1 1 2 2 2 1 2 2 2 1 1 1 14.751 15.431 2;3 7.3217E-35 5078 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 256.43 228.22 2565400000 243700000 264260000 246180000 6003100 6635800 5727200 218730000 90164000 221820000 6816700 7062900 5851300 172760000 170540000 153880000 992090 0 0 221960000 257540000 249030000 5060000 6037500 4630900 10950 1044 10658 205206;205207;205208;205209;205210;205211;205212;205213;205214;205215;205216;205217;205218;205219;205220;205221;205222;205223;205224;205225;205226;205227;205228;205229;205230;205231;205232;205233;205234;205235;205236;205237;205238;205239;205240;205241 126476;126477;126478;126479;126480;126481;126482;126483;126484;126485;126486;126487;126488;126489;126490;126491;126492;126493;126494;126495;126496;126497;126498;126499;126500;126501;126502;126503;126504;126505;126506;126507 126482 31 KGDVVAIYMPMVPEAAVAMLACAR Unmodified 2562.2831 0.2830632 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 54.981 53.601 3 5.4149E-10 26477 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 115.84 114.87 572270000 191980000 195540000 182920000 1830500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10951 1305 10659 205242;205243;205244;205245 126508;126509;126510 126509 3 KGECDLIPGK Unmodified 1115.5645 0.56449431 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.335 15.861 3 0.089549 5334 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 35.664 22.21 203940000 0 0 0 2668100 2223500 0 19592000 21591000 17238000 9574600 6668300 6186300 0 0 0 0 0 0 21278000 15322000 12716000 24344000 19490000 25044000 10952 205;1157 10660 205246;205247;205248;205249;205250;205251;205252;205253;205254;205255;205256;205257;205258;205259 126511;126512 126512 0 KGEDVEK Unmodified 803.4025 0.40249759 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.4364 7.0668 2 0.00023841 1523 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 166.68 97.246 3458300000 733390000 568780000 646710000 7616500 6036400 6661900 17280000 19039000 18946000 18079000 22122000 22009000 171470000 159810000 158960000 17873000 15494000 14710000 264250000 251340000 260340000 16990000 19837000 20529000 10953 374 10661 205260;205261;205262;205263;205264;205265;205266;205267;205268;205269;205270;205271;205272;205273;205274;205275;205276;205277;205278;205279;205280;205281;205282;205283;205284 126513;126514;126515;126516;126517;126518;126519;126520;126521;126522;126523;126524;126525;126526;126527;126528 126518 16 KGEETPTLSYMLPK Unmodified 1592.812 0.81199481 1183 P21513 rne Ribonuclease E yes yes 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 31.726 30.565 2 0.00049296 14259 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.28 110.18 35225000 0 10927000 8816500 0 0 0 0 0 0 0 0 0 0 3770500 3220800 0 0 0 0 8491000 0 0 0 0 10954 1183 10662 205285;205286;205287;205288;205289 126529 126529 0 KGEFELL Unmodified 834.44872 0.4487195 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 36.784 35.118 2 0.013973 17457 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.086 84.578 113710000 6249100 7898600 0 0 0 0 10205000 11275000 14049000 0 0 0 9206400 9562600 8110600 0 0 0 12934000 13520000 10697000 0 0 0 10955 1421 10663 205290;205291;205292;205293;205294;205295;205296;205297;205298;205299;205300 126530;126531;126532;126533;126534;126535;126536 126530 7 KGEILEVVSDCPQSINNIPLDAR Unmodified 2566.3061 0.30610137 572 P0AA31 yedF UPF0033 protein YedF yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 1 42.486 40.704 2;3 1.1259E-28 19225 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 255.21 236.13 1410800000 77251000 70264000 71733000 4875700 4913000 4224000 110160000 114330000 118850000 0 7837300 8253800 142400000 132710000 133720000 0 0 0 130170000 128900000 133750000 5464900 5999700 5012000 10956 572 10664 205301;205302;205303;205304;205305;205306;205307;205308;205309;205310;205311;205312;205313;205314;205315;205316;205317;205318;205319;205320;205321;205322;205323;205324;205325;205326;205327;205328;205329;205330;205331;205332 126537;126538;126539;126540;126541;126542;126543;126544;126545;126546;126547;126548;126549;126550 126549 13 KGELSFYDIFTLAR Unmodified 1658.8668 0.86680757 609 P0AAS0 ylaC Inner membrane protein YlaC yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.182 51.754 3 2.8553E-09 20716 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 130.24 128.4 73352000 0 0 0 1227100 1088300 953170 2897700 2761500 2260100 6338700 4764500 4022900 3284500 3330100 2791900 0 0 0 4440200 6586500 6573500 8356600 6788700 4886300 10957 609 10665 205333;205334;205335;205336;205337;205338;205339;205340;205341;205342;205343;205344;205345;205346;205347;205348;205349;205350 126551;126552;126553;126554;126555;126556;126557 126554 7 KGELTVDDSAIIGIIR Unmodified 1698.9516 0.95159983 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 43.656 42.191 2;3 9.0049E-16 20914 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 149.3 138.66 957960000 45877000 42957000 37100000 3066000 2824700 1914200 72120000 64970000 55651000 19363000 16647000 15021000 45638000 43097000 36433000 88047000 106620000 109210000 47257000 44361000 41647000 4328900 5985600 7819900 10958 536 10666 205351;205352;205353;205354;205355;205356;205357;205358;205359;205360;205361;205362;205363;205364;205365;205366;205367;205368;205369;205370;205371;205372;205373;205374;205375;205376;205377;205378;205379;205380;205381;205382;205383;205384;205385;205386;205387;205388;205389;205390;205391;205392 126558;126559;126560;126561;126562;126563;126564;126565;126566;126567;126568;126569;126570;126571;126572;126573;126574;126575;126576;126577;126578;126579;126580;126581;126582;126583 126566 22 KGEMNFDVVIASPDAMR Unmodified 1878.8968 0.89680384 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 2 39.188 37.709 2;3 6.2792E-89 18369 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 341.06 335.57 2834600000 385160000 350850000 329590000 28267000 29324000 27529000 112820000 104140000 107140000 4966300 0 0 164910000 170940000 150490000 45634000 26094000 30911000 226930000 233060000 258150000 3903800 5869100 37956000 10959 353 10667 205393;205394;205395;205396;205397;205398;205399;205400;205401;205402;205403;205404;205405;205406;205407;205408;205409;205410;205411;205412;205413;205414;205415;205416;205417;205418;205419;205420;205421;205422;205423;205424;205425;205426;205427;205428;205429;205430;205431;205432;205433 126584;126585;126586;126587;126588;126589;126590;126591;126592;126593;126594;126595;126596;126597;126598;126599;126600;126601;126602;126603;126604;126605;126606;126607;126608;126609;126610;126611;126612;126613;126614;126615;126616;126617;126618;126619;126620;126621;126622;126623;126624;126625;126626;126627;126628 126615 45 KGENEINQWADR Unmodified 1458.6852 0.68515481 1809 P76035 yciW Uncharacterized protein YciW yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 17.45 18.046 3 0.0056003 6626 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 43.717 35.992 68258000 9386100 8158200 5933200 0 0 0 0 5188000 4178300 0 0 0 4054000 3666300 3649400 0 1143300 896960 7867000 7751600 6385100 0 0 0 10960 1809 10668 205434;205435;205436;205437;205438;205439;205440;205441;205442;205443;205444;205445;205446 126629;126630 126630 1 KGEVLIK Unmodified 785.50109 0.50108942 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.933 12.542 2 0.0018339 3471 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 129.55 61.07 1452300000 122790000 131030000 106050000 0 1318000 0 148140000 129550000 161080000 2183700 1114800 1142600 104220000 93668000 88653000 0 1076200 595400 128400000 124050000 105180000 0 963500 1056600 10961 1253 10669 205447;205448;205449;205450;205451;205452;205453;205454;205455;205456;205457;205458;205459;205460;205461;205462;205463;205464;205465;205466 126631;126632;126633 126631 3 KGEVVWYAPDHDYGPR Unmodified 1887.8904 0.89039656 749 P0ACV0 lpxL Lipid A biosynthesis lauroyltransferase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 2 2 2 1 24.945 23.978 3;4 2.0266E-07 10733 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 84.213 74.555 212190000 9266500 6357600 0 0 0 0 24200000 26794000 24520000 0 6202700 4529300 13786000 12643000 10115000 1778000 923200 835560 22458000 19434000 24631000 0 0 3716800 10962 749 10670 205467;205468;205469;205470;205471;205472;205473;205474;205475;205476;205477;205478;205479;205480;205481;205482;205483;205484;205485;205486;205487;205488;205489;205490;205491;205492;205493 126634;126635;126636;126637;126638;126639;126640;126641;126642;126643;126644;126645;126646;126647 126641 10 KGFADAR Unmodified 763.39769 0.39768698 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS 1 10.512 11.259 2 0.021789 2601 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.469 40.25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10963 65 10671 205494 126648 126648 1 KGFAEAIK Unmodified 862.49125 0.49125301 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 12.95 13.649 2 0.013304 4111 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.113 11.078 190560000 62289000 61855000 66411000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10964 1525 10672 205495;205496;205497 126649 126649 1 KGFEQLMMWVDSK Unmodified 1597.7633 0.76327047 1402 P33012 sbmC DNA gyrase inhibitor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 1 1 2 1 1 1 1 1 1 2 2 2 46.492 45.021 2;3 1.8143E-24 18491 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 218.06 200.59 789960000 55802000 53772000 49974000 87624000 89447000 94208000 21713000 22821000 40267000 38769000 59262000 60931000 7068100 5001400 10839000 3961800 4690300 6487000 7954200 7917700 6442200 20173000 19364000 15475000 10965 1402 10673 205498;205499;205500;205501;205502;205503;205504;205505;205506;205507;205508;205509;205510;205511;205512;205513;205514;205515;205516;205517;205518;205519;205520;205521;205522;205523;205524;205525;205526;205527;205528;205529;205530;205531;205532;205533;205534;205535;205536 126650;126651;126652;126653;126654;126655;126656;126657;126658;126659;126660;126661;126662;126663;126664;126665;126666;126667;126668;126669;126670;126671;126672;126673;126674;126675;126676;126677;126678;126679 126653 30 KGFEQLMMWVDSK Oxidation (M) 1613.7582 0.7581851 1402 P33012 sbmC DNA gyrase inhibitor yes yes 0 1 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 47.023 45.232 3 0.0015468 16149 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 65.043 60.152 8738500 0 0 0 2528500 2253300 1998600 0 0 0 909880 1048300 0 0 0 0 0 0 0 0 0 0 0 0 0 10966 1402 10673 205537;205538;205539;205540;205541 126680;126681 126681 543 2 KGFFGWFNR Unmodified 1157.577 0.57704833 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 40.452 38.45 3 0.001908 15340 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 68.224 65.245 10385000 0 0 0 863640 920520 0 0 0 2323700 0 1926600 2330800 0 0 0 0 0 0 0 2019300 0 0 0 0 10967 1365 10674 205542;205543;205544;205545;205546;205547 126682 126682 1 KGFIANTLTPFVGDANTQTPEFK Unmodified 2495.2696 0.2696395 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.587 42.759 3 0.00013823 15211 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 76.807 73.798 50793000 0 0 0 5638400 4358700 5616000 0 2928700 2996500 3618900 3079400 4112300 1896700 2504100 0 0 0 0 3758300 3556800 0 3969200 0 2759300 10968 1393 10675 205548;205549;205550;205551;205552;205553;205554;205555;205556;205557;205558;205559;205560;205561 126683;126684;126685;126686 126685 4 KGFIDVEQVR Unmodified 1189.6455 0.64552182 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 23.241 22.509 2;3 2.7718E-09 10041 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 198.61 168.54 1156600000 49634000 53096000 56144000 0 0 0 101780000 111790000 84787000 0 0 0 84241000 84882000 79618000 0 0 0 149790000 155020000 145400000 0 379390 0 10969 1489 10676 205562;205563;205564;205565;205566;205567;205568;205569;205570;205571;205572;205573;205574;205575;205576;205577;205578;205579;205580;205581;205582;205583;205584;205585;205586 126687;126688;126689;126690;126691;126692;126693;126694;126695;126696;126697;126698;126699;126700 126688 14 KGGDIKDFANLK Unmodified 1304.7089 0.70885036 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 2 1 1 1 17.633 18.382 2;3 3.9916E-05 6681 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.65 96.95 157770000 47552000 34998000 35953000 0 0 0 0 0 0 0 0 0 5873800 1439900 6854100 0 0 0 9709900 9140300 6251100 0 0 0 10970 1501 10677 205587;205588;205589;205590;205591;205592;205593;205594;205595;205596;205597;205598;205599;205600;205601 126701;126702;126703;126704;126705;126706;126707;126708 126708 7 KGGEVLTR Unmodified 858.49232 0.49231565 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 10.621 11.261 1;2 0.00091874 2237 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 125.47 19.088 2669300000 15931000 11219000 10643000 5184100 4275200 3429000 339840000 278730000 273520000 276180000 258590000 266020000 138020000 117820000 106520000 46165000 29391000 30512000 136300000 130170000 131890000 0 0 58919000 10971 1088 10678 205602;205603;205604;205605;205606;205607;205608;205609;205610;205611;205612;205613;205614;205615;205616;205617;205618;205619;205620;205621;205622;205623;205624;205625;205626;205627;205628;205629;205630;205631;205632;205633;205634;205635 126709;126710;126711;126712;126713;126714;126715;126716;126717;126718;126719 126711 11 KGGLANVVEK Unmodified 1013.5869 0.58694431 1543 P39829 garD D-galactarate dehydratase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.412 13.257 2 0.00077954 3848 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.085 46.638 88894000 10696000 5325500 6588900 0 0 1652200 10272000 9312500 9110400 0 0 0 0 6229100 9387300 0 0 0 7654900 6284100 6381000 0 0 0 10972 1543 10679 205636;205637;205638;205639;205640;205641;205642;205643;205644;205645;205646;205647 126720;126721;126722 126720 3 KGGNIGAAGSVSYMFDNTGVIVFK Unmodified 2431.2206 0.22058082 413 P0A8A2 yeeN Probable transcriptional regulatory protein YeeN yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 47.308 45.902 3 4.5824E-10 21337 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 118.76 115.66 101710000 0 0 0 1341000 1425300 0 15817000 0 13708000 0 0 0 9049400 8949300 11309000 0 0 0 13976000 12600000 13537000 0 0 0 10973 413 10680 205648;205649;205650;205651;205652;205653;205654;205655;205656;205657 126723;126724;126725;126726 126726 4 KGGPLADGIVITPSHNPPEDGGIK Unmodified 2368.2387 0.23867373 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 3 2 27.649 26.503 3;4 3.8475E-16 12172 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 155.87 148.91 727050000 68372000 45171000 47912000 0 0 0 74153000 65826000 61371000 0 0 0 43840000 35497000 38943000 0 0 0 79345000 81934000 84690000 0 0 0 10974 1450 10681 205658;205659;205660;205661;205662;205663;205664;205665;205666;205667;205668;205669;205670;205671;205672;205673;205674;205675;205676;205677;205678;205679;205680;205681;205682 126727;126728;126729;126730;126731;126732;126733;126734;126735;126736;126737;126738;126739;126740;126741;126742;126743 126731 17 KGGQHSGGNFK Unmodified 1115.5472 0.54720476 1176 P56614;P21361 ymdF;yciG Uncharacterized protein YmdF;Uncharacterized protein YciG yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 2 2 2 1 1 2 1 1 4.3333 5.2027 2;3 0.0019417 1206 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 78.655 66.886 113410000 0 0 26879000 0 0 0 21755000 24147000 24786000 0 0 0 0 2424100 2626100 0 0 0 5167500 3026000 2603100 0 0 0 10975 1176 10682 205683;205684;205685;205686;205687;205688;205689;205690;205691;205692;205693;205694;205695 126744;126745;126746;126747;126748;126749;126750 126750 7 KGGTIDITSSIDEPVAPAEGIAR Unmodified 2296.1911 0.19105483 1533 P39377 iadA Isoaspartyl dipeptidase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.835 35.127 3 7.6065E-07 16922 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.23 101.12 219010000 23387000 27132000 20254000 724380 556330 784990 22527000 19510000 22919000 0 0 810190 9492800 10828000 10807000 0 0 0 16134000 19198000 13943000 0 0 0 10976 1533 10683 205696;205697;205698;205699;205700;205701;205702;205703;205704;205705;205706;205707;205708;205709;205710;205711 126751 126751 1 KGGVIVYPTDSGYALGCK Unmodified 1883.9451 0.94513424 962 P0AFR4 yciO Uncharacterized protein YciO yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.571 28.276 2 4.8025E-22 13039 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 184.76 184.76 150170000 28505000 23201000 25560000 1452800 943770 855050 9859700 8754900 8975200 0 0 0 5645300 6177400 5133500 0 0 0 8171300 8743900 8186800 0 0 0 10977 962 10684 205712;205713;205714;205715;205716;205717;205718;205719;205720;205721;205722;205723;205724;205725;205726 126752;126753;126754;126755 126754 4 KGGVNVAAGTGISNYINTIPVEEQPEYPGNLELER Unmodified 3727.8693 0.86933335 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 6 6 7 3 3 4 2 2 3 3 3 3 2 2 2 3 3 3 3 5 5 48.476 47.165 3;4;5;6 1.5096E-26 18806 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 177.99 176.5 23740000000 224750000 197780000 186810000 3099500000 2899100000 3223000000 559480000 606630000 568450000 191800000 221370000 183930000 372580000 349520000 387950000 83793000 51690000 54586000 672180000 646720000 731670000 2786400000 2822900000 2617400000 10978 939 10685 205727;205728;205729;205730;205731;205732;205733;205734;205735;205736;205737;205738;205739;205740;205741;205742;205743;205744;205745;205746;205747;205748;205749;205750;205751;205752;205753;205754;205755;205756;205757;205758;205759;205760;205761;205762;205763;205764;205765;205766;205767;205768;205769;205770;205771;205772;205773;205774;205775;205776;205777;205778;205779;205780;205781;205782;205783;205784;205785;205786;205787;205788;205789;205790;205791;205792;205793;205794;205795;205796;205797;205798;205799;205800;205801;205802;205803 126756;126757;126758;126759;126760;126761;126762;126763;126764;126765;126766;126767;126768;126769;126770;126771;126772;126773;126774;126775;126776;126777;126778;126779;126780;126781;126782;126783;126784;126785;126786;126787;126788;126789;126790;126791;126792;126793;126794;126795;126796;126797;126798;126799;126800;126801;126802;126803;126804;126805;126806;126807;126808;126809;126810;126811;126812;126813;126814;126815;126816;126817 126766 62 KGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERR Unmodified 3883.9704 0.97044438 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 5 1 3 1 2 1 1 4 4 5 44.296 42.644 3;4;5;6 7.9073E-87 16707 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 290.48 286.37 10709000000 0 0 0 2004900000 1899200000 2264200000 0 0 0 69172000 66431000 69101000 0 0 0 51652000 45041000 37014000 0 0 0 1288800000 1346200000 1567800000 10979 939 10686 205804;205805;205806;205807;205808;205809;205810;205811;205812;205813;205814;205815;205816;205817;205818;205819;205820;205821;205822;205823;205824;205825;205826;205827;205828;205829;205830;205831;205832;205833;205834;205835;205836;205837;205838;205839;205840 126818;126819;126820;126821;126822;126823;126824;126825;126826;126827;126828;126829;126830;126831;126832;126833;126834;126835;126836;126837;126838;126839;126840;126841;126842;126843;126844;126845;126846;126847;126848;126849;126850;126851;126852;126853 126835 36 KGHIAGSINLLPSEIK Unmodified 1675.9621 0.96210494 981 P0AG27 yibN Uncharacterized protein YibN yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.951 25.627 3 5.6139E-05 9595 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 73.833 70.114 178310000 8145100 6254200 0 0 0 0 16003000 11967000 13455000 7751900 6757100 3190600 11985000 10731000 11038000 0 0 0 22031000 16193000 14700000 5928500 5453000 6725900 10980 981 10687 205841;205842;205843;205844;205845;205846;205847;205848;205849;205850;205851;205852;205853;205854;205855;205856;205857 126854 126854 1 KGHLTLQMTTLR Unmodified 1397.7813 0.7813038 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 2 1 2 2 3 3 3 3 3 3 3 1 18.538 19.14 2;3;4 6.0131E-07 7223 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 178.1 167.73 1197600000 58959000 71072000 49641000 0 1932500 1430700 56641000 66518000 144450000 0 0 0 135430000 97161000 62151000 0 0 0 155800000 147280000 148610000 0 511530 0 10981 183 10688 205858;205859;205860;205861;205862;205863;205864;205865;205866;205867;205868;205869;205870;205871;205872;205873;205874;205875;205876;205877;205878;205879;205880;205881;205882;205883;205884;205885;205886;205887;205888;205889;205890;205891;205892;205893;205894 126855;126856;126857;126858;126859;126860;126861;126862;126863;126864;126865;126866;126867;126868;126869;126870;126871;126872;126873;126874;126875 126868 21 KGIEVLLLSDR Unmodified 1241.7343 0.73433683 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 34.631 33.24 2;3 5.2853E-05 15897 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.09 92.396 213500000 26528000 23212000 21506000 0 0 0 3318600 4612000 4049900 0 0 0 18817000 19375000 17499000 0 0 0 24890000 24163000 25530000 0 0 0 10982 295 10689 205895;205896;205897;205898;205899;205900;205901;205902;205903;205904;205905;205906;205907;205908;205909;205910;205911;205912;205913;205914;205915 126876;126877;126878;126879;126880;126881;126882;126883;126884;126885;126886;126887;126888;126889;126890 126876 15 KGIIELSR Unmodified 914.55492 0.5549159 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.008 17.498 2 1.1167E-05 4589 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 179.21 123.09 2817900000 50649000 53900000 40981000 234250000 229820000 283840000 73577000 75231000 91992000 32280000 30031000 29314000 33504000 34034000 29999000 19085000 14126000 14739000 74996000 87491000 68867000 434620000 395810000 384740000 10983 133 10690 205916;205917;205918;205919;205920;205921;205922;205923;205924;205925;205926;205927;205928;205929;205930;205931;205932;205933;205934;205935;205936;205937;205938;205939 126891;126892;126893;126894;126895;126896;126897;126898;126899;126900;126901;126902;126903;126904;126905;126906;126907;126908;126909;126910;126911 126906 21 KGIILAGGSGTR Unmodified 1128.6615 0.66150624 1489;1641 P37744;P61887 rmlA1;rmlA2 Glucose-1-phosphate thymidylyltransferase 1;Glucose-1-phosphate thymidylyltransferase 2 no no 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 13.469 14.335 2;3 3.1733E-06 4117 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 141.29 133.06 1040100000 70941000 55843000 55243000 0 0 0 90353000 84672000 82167000 0 0 0 89460000 79601000 65440000 0 0 0 129730000 122680000 113950000 0 0 0 10984 1489;1641 10691 205940;205941;205942;205943;205944;205945;205946;205947;205948;205949;205950;205951;205952;205953;205954;205955;205956;205957;205958;205959;205960;205961;205962;205963 126912;126913;126914;126915;126916;126917;126918;126919;126920 126920 8 KGIVMFEK Unmodified 950.52592 0.52592396 902 P0AF08 mrp Protein mrp yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 18.581 19.051 2 0.00075322 7183 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.06 113.29 413940000 0 0 0 2815900 3043400 3893600 70798000 66514000 74020000 0 0 0 45437000 0 0 0 0 0 75707000 68726000 0 1487900 0 1497100 10985 902 10692 205964;205965;205966;205967;205968;205969;205970;205971;205972;205973;205974 126921;126922;126923;126924;126925 126924 5 KGIYKLETIEGSK Unmodified 1464.8188 0.81879474 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 2 2 2 3 3 3 16.324 16.649 2;3;4 1.7797E-30 4173 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 284.15 272.99 7781700000 0 0 0 1869900000 1902500000 1597000000 0 0 0 39303000 43423000 41540000 0 0 0 12437000 14658000 16802000 0 0 0 808690000 715680000 719770000 10986 939 10693 205975;205976;205977;205978;205979;205980;205981;205982;205983;205984;205985;205986;205987;205988;205989;205990;205991;205992;205993;205994;205995;205996;205997;205998;205999;206000;206001;206002;206003;206004;206005;206006;206007 126926;126927;126928;126929;126930;126931;126932;126933;126934;126935;126936;126937;126938;126939;126940;126941;126942;126943;126944;126945;126946;126947;126948;126949;126950;126951;126952;126953;126954;126955;126956;126957;126958 126954 33 KGLAALSLPEHQR Unmodified 1418.7994 0.7993967 1407 P33030 yeiR Uncharacterized protein YeiR yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.947 18.498 3 0.023121 7142 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 42.579 33.85 70507000 0 0 2080900 0 0 447050 6306600 8336500 9637800 739900 0 0 5562100 4650700 5849200 0 0 0 10903000 8090000 7902300 0 0 0 10987 1407 10694 206008;206009;206010;206011;206012;206013;206014;206015;206016;206017;206018;206019 126959;126960;126961 126959 3 KGLADTALK Unmodified 915.53893 0.53893149 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 13.068 13.617 2 8.8318E-08 3216 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 189.38 68.923 34568000000 330310000 303290000 298220000 31891000 27735000 33622000 416950000 411240000 408310000 2052600000 2059700000 2596300000 316940000 294470000 285710000 5249900000 4018700000 4615300000 515080000 454070000 427140000 3045100000 3179100000 3196100000 10988 458 10695 206020;206021;206022;206023;206024;206025;206026;206027;206028;206029;206030;206031;206032;206033;206034;206035;206036;206037;206038;206039;206040;206041;206042;206043;206044;206045;206046;206047;206048 126962;126963;126964;126965;126966;126967;126968;126969;126970;126971;126972;126973;126974;126975;126976;126977;126978;126979;126980;126981;126982;126983;126984;126985;126986;126987;126988 126964 26 KGLDDLAKPSEK Unmodified 1299.7034 0.70343063 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1 13.189 13.99 2;3 5.7092E-11 4322 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 181.87 138.21 994780000 144490000 159460000 162230000 16368000 14931000 17088000 141450000 93756000 102710000 5975200 4020200 3657600 24575000 20720000 20678000 0 0 522050 18862000 21909000 21370000 0 0 0 10989 147 10696 206049;206050;206051;206052;206053;206054;206055;206056;206057;206058;206059;206060;206061;206062;206063;206064;206065;206066;206067;206068;206069;206070;206071;206072;206073;206074;206075;206076;206077;206078;206079 126989;126990;126991;126992;126993;126994;126995;126996;126997;126998;126999;127000;127001;127002;127003;127004;127005;127006;127007;127008;127009;127010 127003 21 KGLVELQEWFDR Unmodified 1518.7831 0.78307794 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 43.478 41.905 3 3.5074E-06 20450 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 111.79 98.656 51908000 0 0 0 0 0 0 4622200 4475800 6641500 0 0 0 5000300 5027200 6218600 0 0 0 6374400 6400500 7147800 0 0 0 10990 193 10697 206080;206081;206082;206083;206084;206085;206086;206087;206088 127011;127012;127013 127012 1 KGMASGAVIESFLDK Unmodified 1551.7967 0.79667909 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 3 3 3 2 1 2 4 3 2 2 1 1 3 4 3 1 1 1 34.316 33.033 2;3 6.7105E-20 17193 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 236.3 212.32 672290000 80858000 76463000 87711000 3784900 3966800 4314500 36228000 39024000 35109000 13165000 11762000 9939300 41691000 33515000 26342000 16519000 13236000 9644600 37347000 45136000 38376000 2316300 3123300 2720800 10991 297 10698 206089;206090;206091;206092;206093;206094;206095;206096;206097;206098;206099;206100;206101;206102;206103;206104;206105;206106;206107;206108;206109;206110;206111;206112;206113;206114;206115;206116;206117;206118;206119;206120;206121;206122;206123;206124;206125;206126;206127;206128;206129;206130;206131;206132;206133;206134;206135;206136;206137;206138;206139;206140;206141;206142;206143 127014;127015;127016;127017;127018;127019;127020;127021;127022;127023;127024;127025;127026;127027;127028;127029;127030;127031;127032;127033;127034;127035;127036;127037;127038;127039;127040;127041;127042;127043;127044;127045;127046 127039 32 KGMASGAVIESFLDKGR Unmodified 1764.9193 0.91925384 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 33.199 31.648 3 0.0038556 10687 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 57.788 53.567 18694000 0 0 0 1608400 1334500 1007000 0 0 0 0 3696300 3735000 0 0 0 7312300 0 0 0 0 0 0 0 0 10992 297 10699 206144;206145;206146;206147;206148;206149 127047;127048;127049 127047 3 KGMPIATPVFDGAK Oxidation (M) 1446.7541 0.754086 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 5 5 5 3 3 3 24.088 23.515 2;3 2.6074E-06 9028 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 131.17 122.59 191620000 0 0 0 0 0 0 0 0 0 14065000 12930000 8097900 0 0 0 46347000 30087000 33511000 0 0 0 11673000 17153000 17758000 10993 463 10700 206150;206151;206152;206153;206154;206155;206156;206157;206158;206159;206160;206161;206162;206163;206164;206165;206166;206167;206168;206169;206170;206171;206172;206173;206174;206175;206176;206177;206178;206179;206180;206181;206182 127050;127051;127052;127053;127054;127055;127056;127057;127058;127059;127060;127061;127062;127063;127064;127065;127066 127053 265 17 KGMPIATPVFDGAK Unmodified 1430.7592 0.75917137 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 1 4 3 3 1 1 2 2 3 28.468 27.355 2;3 5.6326E-11 10037 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 170.95 170.95 3159800000 6498400 6352500 3704400 0 1150400 0 0 0 0 179820000 188560000 174220000 4293900 3107200 0 719000000 509100000 564810000 8633400 6496300 0 257990000 281700000 244390000 10994 463 10700 206183;206184;206185;206186;206187;206188;206189;206190;206191;206192;206193;206194;206195;206196;206197;206198;206199;206200;206201;206202;206203;206204;206205;206206;206207;206208;206209;206210;206211;206212;206213 127067;127068;127069;127070;127071;127072;127073;127074;127075;127076;127077;127078;127079;127080;127081;127082;127083;127084 127083 18 KGMVNNK Unmodified 789.41671 0.41670786 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 1 By MS/MS By MS/MS 1 1 6.424 7.1712 2 3.1951E-05 1269 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 144.66 116.13 11592000 0 0 11592000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10995 334 10701 206214;206215 127085;127086 127085 2 KGNANVVFFDGITAGEK Unmodified 1765.8999 0.89989861 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 33.531 32.292 2;3 3.7587E-10 15290 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 170.95 155.75 97215000 37325000 31195000 28696000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10996 774 10702 206216;206217;206218;206219;206220;206221 127087;127088;127089;127090;127091 127089 5 KGNEDLLK Unmodified 915.50255 0.50254598 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.721 12.55 2 2.5322E-07 3371 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 158.61 57.871 2485300000 378570000 369730000 345020000 0 0 0 0 321970000 0 0 0 0 199230000 196400000 0 0 0 0 212630000 235910000 225890000 0 0 0 10997 874 10703 206222;206223;206224;206225;206226;206227;206228;206229;206230;206231;206232 127092;127093;127094;127095;127096;127097;127098;127099;127100;127101;127102 127092 11 KGNEGTIK Unmodified 845.46068 0.46068117 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.0045 5.8537 2 2.777E-06 1326 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 187.3 116 2540300000 321670000 361240000 262190000 0 0 0 215570000 246880000 226140000 0 0 0 156950000 125340000 120700000 0 0 0 180420000 155530000 167640000 0 0 0 10998 874 10704 206233;206234;206235;206236;206237;206238;206239;206240;206241;206242;206243;206244 127103;127104;127105;127106;127107;127108;127109;127110;127111;127112;127113 127110 11 KGNTISTPR Unmodified 972.53524 0.53524309 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.524 11.202 2 0.030866 2137 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 61.602 29.537 532730000 9394000 8089100 0 1856600 1920900 0 78820000 66421000 70934000 13714000 15256000 16092000 51878000 44878000 50225000 0 5370900 0 34692000 33421000 29770000 0 0 0 10999 25 10705 206245;206246;206247;206248;206249;206250;206251;206252;206253;206254;206255;206256;206257;206258;206259;206260;206261 127114;127115;127116 127116 3 KGPFIDLHLLK Unmodified 1279.7652 0.76524303 371 P0A7U3 rpsS 30S ribosomal protein S19 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 33.972 32.446 2;3 9.6966E-05 12424 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 103.21 80.527 6315900000 936940000 861570000 774030000 22637000 21653000 24549000 271540000 300940000 242980000 82546000 78008000 77711000 273110000 266440000 293460000 55485000 32149000 62254000 535360000 582810000 388890000 46029000 41617000 43198000 11000 371 10706 206262;206263;206264;206265;206266;206267;206268;206269;206270;206271;206272;206273;206274;206275;206276;206277;206278;206279;206280;206281;206282;206283;206284;206285;206286;206287;206288;206289;206290;206291;206292;206293;206294;206295;206296;206297;206298;206299;206300;206301;206302;206303;206304;206305;206306;206307 127117;127118;127119;127120;127121;127122;127123;127124;127125;127126;127127;127128;127129;127130;127131;127132;127133;127134;127135;127136;127137;127138;127139;127140;127141;127142;127143;127144;127145;127146;127147;127148;127149;127150;127151;127152;127153;127154;127155;127156;127157;127158;127159;127160;127161 127133 42 KGPLNLPNLTR Unmodified 1221.7194 0.71935547 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 2 1 27.157 25.928 2;3 4.227E-05 11867 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 155.11 147.47 5583900000 456990000 482830000 351520000 2637100 3351000 2873100 730950000 710010000 645520000 3136700 3854900 4260300 332610000 357480000 318160000 1287200 1166400 972200 414900000 405750000 348680000 1974100 1791600 1162800 11001 256 10707 206308;206309;206310;206311;206312;206313;206314;206315;206316;206317;206318;206319;206320;206321;206322;206323;206324;206325;206326;206327;206328;206329;206330;206331;206332;206333;206334;206335;206336;206337;206338;206339;206340;206341;206342;206343;206344;206345;206346;206347;206348;206349 127162;127163;127164;127165;127166;127167;127168;127169;127170;127171;127172;127173;127174;127175;127176;127177;127178;127179;127180;127181;127182;127183;127184;127185;127186;127187;127188;127189 127171 28 KGQAHWEGDIK Unmodified 1267.6309 0.63093439 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 11.488 12.291 2;3 1.068E-06 3300 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.09 98.602 751590000 47009000 114970000 98996000 0 0 0 144720000 124590000 120290000 0 0 0 19223000 0 12988000 0 0 0 28016000 18594000 22186000 0 0 0 11002 1038 10708 206350;206351;206352;206353;206354;206355;206356;206357;206358;206359;206360;206361;206362;206363;206364;206365;206366;206367;206368;206369 127190;127191;127192;127193;127194;127195;127196;127197;127198;127199;127200;127201 127197 12 KGQAHWEGDIKR Unmodified 1423.732 0.73204542 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 3 3 3 3 3 2 1 1 10.964 11.7 2;3;4 8.1844E-05 2984 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.69 103.6 481600000 124870000 124780000 106990000 0 0 0 46772000 51312000 17151000 0 0 0 0 0 0 0 0 0 3328200 0 6402600 0 0 0 11003 1038 10709 206370;206371;206372;206373;206374;206375;206376;206377;206378;206379;206380;206381;206382;206383;206384;206385;206386;206387;206388 127202;127203;127204;127205;127206;127207 127204 6 KGQDIER Unmodified 844.44028 0.44028008 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 10.408 10.814 2 0.019917 2568 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.297 39.795 347450000 0 0 0 0 0 0 172050000 403030 165900000 0 0 0 0 0 0 0 4684100 4407700 0 0 0 0 0 0 11004 731 10710 206389;206390;206391;206392;206393 127208;127209 127208 2 KGQIEYIPFPDK Unmodified 1433.7555 0.7554662 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 30.519 29.155 2;3 4.3935E-05 13547 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 72.62 67.621 327000000 25352000 26952000 21777000 0 312670 0 31065000 32672000 32655000 0 0 0 22737000 22895000 25231000 0 0 0 22164000 32970000 30219000 0 0 0 11005 1716 10711 206394;206395;206396;206397;206398;206399;206400;206401;206402;206403;206404;206405;206406;206407;206408;206409;206410;206411;206412;206413;206414;206415;206416;206417;206418 127210;127211;127212;127213;127214;127215;127216;127217;127218 127215 9 KGSASSTDLSPQAIAR Unmodified 1587.8216 0.82164829 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 16.672 17.387 2;3 2.5186E-31 6261 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 282.62 257.15 444220000 34233000 40530000 39008000 0 0 0 43312000 49912000 52433000 1939300 0 0 28552000 32909000 30187000 0 0 0 31168000 27190000 32849000 0 0 0 11006 948 10712 206419;206420;206421;206422;206423;206424;206425;206426;206427;206428;206429;206430;206431;206432;206433;206434;206435;206436;206437;206438;206439;206440;206441;206442;206443 127219;127220;127221;127222;127223;127224;127225;127226;127227;127228;127229;127230;127231;127232;127233;127234;127235;127236;127237;127238;127239;127240;127241;127242 127224 23 KGSEDNCR Unmodified 964.40324 0.40324264 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 3.415 4.2958 2 0.00046422 685 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143 136.62 37419000 6287300 5864500 4569500 0 0 0 0 0 0 0 0 0 1503900 1972600 1469000 0 0 0 4861000 4963200 5927800 0 0 0 11007 1789 10713 206444;206445;206446;206447;206448;206449;206450;206451;206452 127243;127244;127245;127246;127247;127248;127249 127246 7 KGSENYALTTNQGVR Unmodified 1636.8169 0.81689726 1174 P21179 katE Catalase HPII yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 13.931 14.77 2;3 1.0033E-26 4786 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 289.89 262.77 415810000 68451000 68552000 67581000 0 0 0 46207000 46081000 47795000 0 0 531590 8601500 11231000 8091200 0 0 0 16701000 14028000 11954000 0 0 0 11008 1174 10714 206453;206454;206455;206456;206457;206458;206459;206460;206461;206462;206463;206464;206465;206466;206467;206468;206469;206470;206471;206472;206473;206474;206475;206476;206477 127250;127251;127252;127253;127254;127255;127256;127257;127258;127259;127260;127261 127259 9 KGSQVYIEGQLR Unmodified 1376.7412 0.74121312 1010 P0AGE0 ssb Single-stranded DNA-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 1 2 17.132 17.623 2;3 1.1563E-11 6313 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 223.87 206.85 1075000000 171230000 175700000 138450000 915620 1086300 0 80542000 75181000 76034000 1063600 1059400 3812600 31214000 25219000 28527000 11581000 9475600 9405700 89804000 77504000 60748000 3154700 885500 2431200 11009 1010 10715 206478;206479;206480;206481;206482;206483;206484;206485;206486;206487;206488;206489;206490;206491;206492;206493;206494;206495;206496;206497;206498;206499;206500;206501;206502;206503;206504;206505;206506;206507;206508;206509;206510;206511;206512;206513;206514;206515;206516;206517;206518 127262;127263;127264;127265;127266;127267;127268;127269;127270;127271;127272;127273;127274;127275;127276;127277;127278;127279;127280;127281;127282;127283;127284;127285 127277 20 KGSSLQQGFQKPAQAVNR Unmodified 1943.0337 0.03370675 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.497 14.112 3 2.1965E-22 4409 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.86 182.52 312700000 37843000 39713000 33456000 1738200 1652600 2477900 13260000 10951000 9080400 16466000 15111000 12942000 0 15897000 11453000 29070000 11059000 14076000 9105200 11321000 13007000 0 0 3015100 11010 297 10716 206519;206520;206521;206522;206523;206524;206525;206526;206527;206528;206529;206530;206531;206532;206533;206534;206535;206536;206537;206538;206539 127286;127287 127286 2 KGTEIVANAIADSEAFSIAGGGDTLAAIDLFGIADK Unmodified 3520.7937 0.79370879 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 55.353 53.898 3;4 1.2827E-37 26777 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 195.96 194.17 3202800000 264520000 230240000 225750000 4611200 0 1890900 359230000 357940000 322430000 0 0 0 200750000 208590000 174350000 0 0 0 311930000 279380000 261210000 0 0 0 11011 321 10717 206540;206541;206542;206543;206544;206545;206546;206547;206548;206549;206550;206551;206552;206553;206554;206555;206556;206557;206558;206559;206560;206561;206562;206563;206564;206565;206566 127288;127289;127290;127291;127292;127293;127294;127295;127296;127297;127298;127299;127300;127301 127290 14 KGTHNPNFVR Unmodified 1168.6101 0.61013937 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.504 11.275 2 0.00080208 2676 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.157 64.294 29999000 8225800 3953400 3710900 0 0 0 2810800 3433200 2466500 0 0 0 0 2887900 0 0 0 0 2510400 0 0 0 0 0 11012 904 10718 206567;206568;206569;206570;206571;206572;206573;206574 127302;127303 127303 2 KGTTLQGDLK Unmodified 1059.5924 0.59242362 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 11.712 12.595 2;3 2.394E-06 3436 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.83 108.04 4923500000 522170000 568620000 588860000 3411200 2595800 2605400 284290000 286390000 285120000 0 0 0 298090000 293430000 282710000 0 0 0 488280000 477080000 539880000 0 0 0 11013 28 10719 206575;206576;206577;206578;206579;206580;206581;206582;206583;206584;206585;206586;206587;206588;206589;206590;206591;206592;206593;206594;206595;206596;206597;206598;206599;206600;206601;206602;206603;206604 127304;127305;127306;127307;127308;127309;127310;127311;127312;127313;127314;127315;127316;127317;127318;127319;127320;127321;127322;127323;127324 127318 19 KGVADLDNR Unmodified 986.51451 0.51450765 381 P0A7Y8 rnpA Ribonuclease P protein component yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 12.143 12.433 2 0.06927 2756 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 52.549 39.282 46101000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13588000 16109000 16404000 11014 381 10720 206605;206606;206607 127325 127325 1 KGVDMAMR Unmodified 906.44154 0.4415424 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.445 12.967 2 0.002918 3040 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 101.41 80.857 311030000 76606000 0 0 10339000 7251400 8836500 0 0 0 10866000 9631200 12377000 0 0 0 0 2899000 0 0 0 100700000 23772000 25247000 22504000 11015 215 10721 206608;206609;206610;206611;206612;206613;206614;206615;206616;206617;206618;206619 127326 127326 1 KGVDTGFK Unmodified 850.45487 0.45486751 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.311 12.099 2 0.00028007 2960 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 151.5 106.8 1104200000 76973000 59431000 68838000 0 0 0 100440000 100890000 106340000 0 0 0 101930000 92824000 91457000 0 0 0 107360000 99263000 96902000 1513000 0 0 11016 170 10722 206620;206621;206622;206623;206624;206625;206626;206627;206628;206629;206630;206631;206632 127327;127328;127329;127330;127331;127332;127333;127334;127335;127336;127337;127338 127336 12 KGVDVHALK Unmodified 965.56581 0.56581494 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 11.67 12.259 2 0.0010565 2744 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 99.815 45.658 49724000 4140900 0 0 0 0 0 8418000 8026000 8283700 4834500 4974500 3350900 0 0 3116400 0 0 0 0 4578900 0 0 0 0 11017 122 10723 206633;206634;206635;206636;206637;206638;206639;206640;206641 127339;127340;127341 127339 3 KGVIEIVSGASR Unmodified 1214.6983 0.69828568 330 P0A7C2 lexA LexA repressor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 1 2 1 1 2 1 1 2 2 1 2 2 2 21.936 21.79 2;3 4.0829E-05 8829 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.543 73.475 227580000 24587000 23307000 20287000 3432700 2513900 4323400 18577000 15494000 18585000 2637000 3527300 6279700 7251700 5196700 11056000 1217500 0 628200 19220000 22216000 8929100 3352600 2483300 2482400 11018 330 10724 206642;206643;206644;206645;206646;206647;206648;206649;206650;206651;206652;206653;206654;206655;206656;206657;206658;206659;206660;206661;206662;206663;206664;206665;206666;206667;206668;206669;206670;206671;206672;206673;206674;206675;206676;206677;206678 127342;127343;127344;127345;127346;127347;127348;127349;127350;127351;127352;127353;127354;127355;127356;127357;127358;127359;127360 127354 14 KGVIELMR Oxidation (M) 960.54264 0.54263666 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS 1 1 2 16.819 16.813 2 0.0095758 4132 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 93.143 82.718 910660000 0 0 0 0 0 0 0 0 0 689080000 88296000 133290000 0 0 0 0 0 0 0 0 0 0 0 0 11019 497 10725 206679;206680;206681;206682 127361;127362;127363;127364;127365 127364 292 5 KGVIELMR Unmodified 944.54772 0.54772204 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 20.469 20.576 1;2 0.00056707 8438 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.26 129.92 9994800000 65117000 69065000 59014000 1524500 1464300 1323300 73229000 53446000 75766000 3081300000 2987000000 3110900000 47246000 52462000 44024000 0 2477500 0 67911000 67491000 73259000 20642000 19998000 20068000 11020 497 10725 206683;206684;206685;206686;206687;206688;206689;206690;206691;206692;206693;206694;206695;206696;206697;206698;206699;206700;206701;206702;206703;206704;206705;206706;206707 127366;127367;127368;127369;127370;127371;127372;127373;127374;127375;127376;127377;127378;127379;127380;127381;127382;127383 127373 17 KGVISFEK Unmodified 906.51747 0.51746776 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.657 15.422 2 1.8982E-05 5163 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 177.97 134.91 3109100000 194190000 195500000 204760000 0 0 0 334590000 323630000 311730000 0 0 0 221020000 220210000 197900000 0 0 0 324210000 295560000 285790000 0 0 0 11021 412 10726 206708;206709;206710;206711;206712;206713;206714;206715;206716;206717;206718;206719 127384;127385;127386;127387;127388;127389;127390;127391;127392;127393;127394;127395 127391 12 KGVLDQTR Unmodified 915.51378 0.51377937 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.163 12.063 2 0.0016265 3115 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.03 86.989 1196500000 103700000 101970000 91890000 1290300 1198900 1059500 108550000 0 0 0 0 0 119630000 95143000 107890000 0 0 0 169870000 151160000 143100000 0 0 0 11022 1218 10727 206720;206721;206722;206723;206724;206725;206726;206727;206728;206729;206730;206731;206732 127396;127397;127398;127399 127396 4 KGVTPDIIMPTGNEETETGEK Unmodified 2245.0784 0.07839284 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.199 27.943 3 3.5496E-08 12931 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 111.4 107.3 113570000 10224000 10193000 10128000 0 0 0 8525400 7062800 10435000 0 0 0 5956500 9338300 8024600 0 0 0 11695000 10887000 11101000 0 0 0 11023 1221 10728 206733;206734;206735;206736;206737;206738;206739;206740;206741;206742;206743;206744 127400;127401;127402 127401 3 KGYINSLGALTGGQALQQAK Unmodified 2017.0956 0.095638305 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 32.839 31.31 2;3 1.7805E-81 14687 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 392.91 365.94 19081000000 5376100000 4509100000 4093600000 11673000 11119000 12444000 859090000 736910000 740080000 3165800 2690300 3099500 360560000 295670000 319960000 0 0 0 556020000 598000000 590520000 1199400 0 0 11024 517 10729 206745;206746;206747;206748;206749;206750;206751;206752;206753;206754;206755;206756;206757;206758;206759;206760;206761;206762;206763;206764;206765;206766;206767;206768;206769;206770;206771;206772;206773;206774;206775;206776;206777;206778 127403;127404;127405;127406;127407;127408;127409;127410;127411;127412;127413;127414;127415;127416;127417;127418;127419;127420;127421;127422;127423;127424;127425;127426;127427;127428;127429;127430;127431 127423 29 KHAIVAITEHMCDVDELAHFIEK Unmodified 2705.3305 0.33054198 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.922 38.248 5 0.0017839 19082 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 59.429 58.354 218210000 18761000 17732000 15333000 0 0 0 30432000 23926000 27674000 0 0 0 13025000 9990800 11183000 0 0 0 13923000 24966000 11266000 0 0 0 11025 320 10730 206779;206780;206781;206782;206783;206784;206785;206786;206787;206788;206789;206790 127432;127433;127434;127435 127432 4 KHDDFVDR Unmodified 1030.4832 0.48320752 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.715 11.506 2 0.010127 2810 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 82.279 77.189 289530000 80425000 63393000 52531000 0 0 0 38707000 0 34877000 0 0 0 7151100 0 5150900 0 0 0 7299100 0 0 0 0 0 11026 757 10731 206791;206792;206793;206794;206795;206796;206797;206798 127436 127436 1 KHDLPGLMLR Unmodified 1178.6594 0.65939775 1602 P52095 ldcC Lysine decarboxylase, constitutive yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.846 21.725 3 0.00028223 8736 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 77.049 58.609 94623000 11761000 13975000 11129000 0 0 0 11821000 10422000 12779000 1121300 1611400 1194600 3819700 3076600 0 0 0 0 3666000 4897100 3348700 0 0 0 11027 1602 10732 206799;206800;206801;206802;206803;206804;206805;206806;206807;206808;206809;206810;206811;206812 127437;127438;127439;127440;127441;127442;127443 127443 7 KHEIISEAEAEVAEIQEQFQSGLVTAGER Unmodified 3197.5841 0.58405036 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 3 1 1 2 3 3 1 1 1 3 4 4 2 2 1 3 2 1 53.66 52.606 3;4;5 1.0811E-53 19529 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 242.53 231.43 17985000000 71818000 60743000 61698000 0 0 0 63553000 40001000 38470000 1000700000 1413000000 1361100000 44161000 32140000 34871000 2424200000 4683900000 4176100000 96833000 72270000 65699000 1495000000 379290000 369220000 11028 458 10733 206813;206814;206815;206816;206817;206818;206819;206820;206821;206822;206823;206824;206825;206826;206827;206828;206829;206830;206831;206832;206833;206834;206835;206836;206837;206838;206839;206840;206841;206842;206843;206844;206845;206846;206847;206848;206849;206850;206851;206852;206853;206854 127444;127445;127446;127447;127448;127449;127450;127451;127452;127453;127454;127455;127456;127457;127458;127459;127460;127461;127462;127463;127464;127465;127466;127467;127468 127450 25 KHESGVVTDPQTVLPTTTLR Unmodified 2178.1644 0.16444615 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 3 3 3 1 3 3 3 1 1 3 3 3 2 2 1 27.321 26.155 2;3;4 1.0492E-45 11833 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 314.57 314.57 4192200000 413260000 370980000 330640000 0 0 0 287510000 260630000 265180000 2227200 0 0 408860000 346520000 299540000 0 1057900 1711900 399100000 416120000 370440000 6381900 8198800 3799200 11029 788 10734 206855;206856;206857;206858;206859;206860;206861;206862;206863;206864;206865;206866;206867;206868;206869;206870;206871;206872;206873;206874;206875;206876;206877;206878;206879;206880;206881;206882;206883;206884;206885;206886;206887;206888;206889;206890;206891;206892;206893;206894;206895;206896;206897;206898 127469;127470;127471;127472;127473;127474;127475;127476;127477;127478;127479;127480;127481;127482;127483;127484;127485;127486;127487;127488;127489;127490;127491;127492;127493;127494;127495;127496;127497;127498;127499;127500;127501;127502;127503;127504 127492 35 KHFESTPDTPEIIATIHGEGYR Unmodified 2497.2238 0.22375194 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 2 1 1 1 28.822 27.534 3;4 4.183E-07 12738 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.43 105.62 531070000 83399000 102200000 67343000 2139100 1739400 0 49408000 47263000 44949000 0 0 0 22804000 20707000 26023000 0 0 0 16951000 24577000 21566000 0 0 0 11030 546 10735 206899;206900;206901;206902;206903;206904;206905;206906;206907;206908;206909;206910;206911;206912;206913;206914;206915;206916;206917;206918;206919;206920 127505;127506;127507;127508;127509;127510;127511 127505 7 KHGVVGK Unmodified 723.43916 0.43915786 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 6.1124 6.8449 2 0.0026027 1153 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.69 103.47 375820000 128460000 125410000 121940000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11031 1254 10736 206921;206922;206923 127512;127513;127514 127512 3 KHIALVAHDHCK Unmodified 1427.7456 0.74558699 305 P0A731 mgsA Methylglyoxal synthase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 2 1 2 2 2 2 8.8221 9.6819 2;3 3.4422E-10 1200 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.87 118.91 315500000 13831000 13649000 15839000 0 0 0 27867000 14344000 13239000 0 0 0 81628000 8825500 8533800 0 0 0 10853000 14583000 92308000 0 0 0 11032 305 10737 206924;206925;206926;206927;206928;206929;206930;206931;206932;206933;206934;206935;206936;206937;206938;206939;206940;206941;206942 127515;127516;127517;127518;127519;127520;127521;127522;127523;127524;127525;127526;127527;127528 127518 13 KHITAGAK Unmodified 824.48684 0.48683634 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 1 2 2 1 1 1 4.5428 5.4547 2 0.00091534 807 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 125.58 33.394 8346500000 536800000 456400000 551440000 4986000 3697400 3681100 398190000 360210000 341080000 0 0 0 942160000 898000000 762290000 0 0 0 1069000000 1019400000 999170000 0 0 0 11033 504 10738 206943;206944;206945;206946;206947;206948;206949;206950;206951;206952;206953;206954;206955;206956;206957;206958;206959;206960;206961 127529;127530;127531;127532;127533;127534;127535;127536;127537;127538;127539;127540;127541;127542;127543;127544;127545;127546 127545 18 KHKEDMEAR Unmodified 1142.5502 0.55024123 1670 P64455 ydcY Uncharacterized protein YdcY yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 4.2344 5.1147 2 0.12349 777 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 60.019 54.36 23109000 0 0 0 0 0 0 2756100 4289500 4237000 0 0 0 0 0 2774300 0 0 0 4397300 0 4654700 0 0 0 11034 1670 10739 206962;206963;206964;206965;206966;206967 127547 127547 1 KHNASRR Unmodified 867.47873 0.47873127 372 P0A7U7 rpsT 30S ribosomal protein S20 yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 7.5154 7.6565 2 0.055997 1219 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 83.614 75.274 12418000 0 0 0 0 0 0 0 0 0 1136700 970050 996880 0 0 0 2015100 3363300 2861000 0 0 0 1075200 0 0 11035 372 10740 206968;206969;206970;206971;206972;206973;206974 127548;127549;127550 127548 3 KHNGHWTVELNSDSIPR Unmodified 1988.9817 0.98167118 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 19.948 19.936 4 7.5114E-09 5813 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 116.43 107.5 45312000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10437000 16621000 18255000 0 0 0 0 0 0 11036 1249 10741 206975;206976;206977 127551;127552;127553 127553 3 KHNLPHNSLNFVFHGGSGSTAQEIK Unmodified 2718.3626 0.36264546 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 1 1 3 4 4 4 3 4 3 4 3 21.182 21.447 3;4;5 5.2415E-31 8721 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 197.48 184.55 5246700000 292190000 234630000 232430000 1446300 0 1302500 610090000 794220000 951510000 0 0 0 364650000 394520000 331390000 0 0 0 403270000 370130000 264960000 0 0 0 11037 634 10742 206978;206979;206980;206981;206982;206983;206984;206985;206986;206987;206988;206989;206990;206991;206992;206993;206994;206995;206996;206997;206998;206999;207000;207001;207002;207003;207004;207005;207006;207007;207008;207009;207010;207011;207012;207013;207014;207015;207016;207017;207018;207019;207020;207021;207022 127554;127555;127556;127557;127558;127559;127560;127561;127562;127563;127564;127565;127566;127567;127568;127569;127570;127571;127572;127573;127574;127575;127576;127577;127578;127579;127580;127581;127582;127583;127584;127585;127586;127587;127588;127589;127590;127591;127592;127593;127594;127595;127596 127556 43 KHPQQEFLQVDTSK Unmodified 1683.858 0.8580338 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 1 1 2 2 2 1 2 2 15.275 15.882 2;3 2.469E-14 5216 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 210.64 198.02 1562500000 107640000 136270000 162690000 5263400 4690000 5161100 144300000 144290000 129690000 16022000 11515000 12688000 113530000 103920000 104700000 0 6137300 11635000 122250000 88440000 114750000 4894000 6006200 6049200 11038 244 10743 207023;207024;207025;207026;207027;207028;207029;207030;207031;207032;207033;207034;207035;207036;207037;207038;207039;207040;207041;207042;207043;207044;207045;207046;207047;207048;207049;207050;207051;207052;207053;207054;207055;207056;207057;207058;207059;207060;207061;207062;207063;207064;207065 127597;127598;127599;127600;127601;127602;127603;127604;127605;127606;127607;127608;127609;127610;127611;127612;127613;127614;127615;127616;127617;127618;127619;127620;127621;127622 127611 25 KHQFAQSLNYEIAK Unmodified 1675.8682 0.86820455 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 18.389 18.905 2;3 1.8317E-15 7292 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 231.52 202.57 499530000 19750000 22599000 23237000 0 0 0 66070000 47787000 52749000 2900200 3350000 3138500 52810000 46051000 46337000 0 0 0 37408000 35036000 40304000 0 0 0 11039 539 10744 207066;207067;207068;207069;207070;207071;207072;207073;207074;207075;207076;207077;207078;207079;207080;207081;207082;207083;207084;207085;207086;207087;207088;207089;207090;207091;207092 127623;127624;127625;127626;127627;127628;127629;127630;127631;127632;127633;127634;127635;127636;127637;127638;127639 127623 16 KHQKPVPALNQPGGIVEK Unmodified 1939.1003 0.10032975 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 3 3 3 3 3 3 3 3 3 3 3 2 2 3 3 3 3 3 3 13.561 14.169 2;3;4 6.3586E-36 4520 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 280.97 278.99 5212500000 827330000 405710000 538690000 33085000 27397000 39153000 235650000 226990000 165470000 98538000 92472000 95327000 263560000 397390000 291280000 31623000 27716000 28615000 338380000 410690000 412230000 82557000 76165000 66515000 11040 1625 10745 207093;207094;207095;207096;207097;207098;207099;207100;207101;207102;207103;207104;207105;207106;207107;207108;207109;207110;207111;207112;207113;207114;207115;207116;207117;207118;207119;207120;207121;207122;207123;207124;207125;207126;207127;207128;207129;207130;207131;207132;207133;207134;207135;207136;207137;207138;207139;207140;207141;207142;207143;207144;207145;207146;207147;207148;207149;207150;207151;207152;207153;207154;207155;207156;207157;207158;207159;207160;207161 127640;127641;127642;127643;127644;127645;127646;127647;127648;127649;127650;127651;127652;127653;127654;127655;127656;127657;127658;127659;127660;127661;127662;127663;127664;127665;127666;127667;127668;127669;127670;127671;127672;127673;127674;127675;127676;127677;127678;127679;127680;127681;127682;127683;127684;127685;127686;127687;127688;127689;127690;127691;127692;127693;127694;127695;127696;127697;127698;127699;127700;127701 127688 62 KHSICPSGK Unmodified 1012.5124 0.51239916 534 P0A9L5 ppiC Peptidyl-prolyl cis-trans isomerase C yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 5.2967 6.1459 2 0.00021779 1055 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.86 104.89 240850000 20678000 21824000 17726000 0 0 0 32258000 27707000 30734000 0 0 0 13549000 11056000 13696000 0 0 0 20208000 18005000 13409000 0 0 0 11041 534 10746 207162;207163;207164;207165;207166;207167;207168;207169;207170;207171;207172;207173 127702;127703;127704;127705;127706 127702 4 KHTSDTPFDVSK Unmodified 1360.6623 0.6622941 40 P00805 ansB L-asparaginase 2 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 3 3 2 4 2 2 2 2 1 12.365 13.228 2;3 7.4938E-17 3604 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 214.04 197.71 2945200000 0 3584800 0 0 0 0 477940000 488040000 450490000 0 0 0 340470000 353920000 354210000 0 0 0 207770000 207580000 61191000 0 0 0 11042 40 10747 207174;207175;207176;207177;207178;207179;207180;207181;207182;207183;207184;207185;207186;207187;207188;207189;207190;207191;207192;207193;207194;207195 127707;127708;127709;127710;127711;127712;127713;127714 127713 8 KHYDEDEEFAER Unmodified 1566.6587 0.65866529 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.223 13.059 2;3 4.265E-23 3735 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 231.17 231.17 869940000 53087000 49067000 42484000 0 0 0 84416000 77679000 68776000 0 0 0 77802000 75971000 72254000 0 0 0 87017000 91055000 90335000 0 0 0 11043 1073 10748 207196;207197;207198;207199;207200;207201;207202;207203;207204;207205;207206;207207;207208;207209;207210;207211;207212;207213;207214;207215;207216;207217;207218;207219 127715;127716;127717;127718;127719;127720;127721;127722;127723;127724;127725;127726;127727;127728;127729;127730;127731;127732;127733 127721 19 KHYFDPK Unmodified 933.47085 0.47085192 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 10.783 11.6 2 0.015426 2597 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 84.916 76.232 548480000 60920000 87375000 96773000 0 0 0 0 0 0 0 0 0 42787000 0 41801000 0 0 0 106630000 112200000 0 0 0 0 11044 542 10749 207220;207221;207222;207223;207224;207225;207226 127734;127735 127735 2 KIAAGDTSNLGDTSTLADPGVVEK Unmodified 2358.1914 0.19144876 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 28.941 27.837 2;3 1.2496E-83 12888 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 305.33 300.95 442280000 167010000 130760000 141010000 0 617020 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2882900 0 0 0 11045 1305 10750 207227;207228;207229;207230;207231;207232;207233;207234 127736;127737;127738;127739;127740 127736 5 KIAYDTLVMALGSTSNDFNTPGVK Unmodified 2541.2785 0.27848963 27 P00393 ndh NADH dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.601 47.148 3 7.811E-06 18631 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 88.79 88.353 87658000 0 0 0 1795400 0 2220600 7329800 7311100 8366300 0 6792900 8171900 5167700 7001900 5484700 0 0 0 0 8577100 7140600 4289000 4346400 3662400 11046 27 10751 207235;207236;207237;207238;207239;207240;207241;207242;207243;207244;207245;207246;207247;207248;207249 127741;127742;127743;127744;127745 127743 5 KIDAIIKPFK Unmodified 1171.7329 0.73288027 567 P0A9Z1 glnB Nitrogen regulatory protein P-II 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 1 21.566 21.737 2;3 0.00010233 8310 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 109.42 104.11 888640000 88922000 75550000 72941000 0 685910 829720 70959000 63081000 71461000 0 646290 0 61761000 65118000 55070000 0 0 0 85122000 97781000 78237000 0 0 475090 11047 567 10752 207250;207251;207252;207253;207254;207255;207256;207257;207258;207259;207260;207261;207262;207263;207264;207265;207266;207267;207268;207269;207270;207271;207272;207273;207274;207275;207276;207277 127746;127747;127748;127749;127750;127751;127752;127753;127754;127755;127756;127757;127758;127759;127760;127761;127762;127763;127764 127761 19 KIDAIISSLSITDK Unmodified 1502.8556 0.85557418 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 37.732 36.2 2;3 1.8946E-14 17468 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 225.13 212.51 485230000 170750000 157420000 139790000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6381800 3056200 7845200 0 0 0 11048 217 10753 207278;207279;207280;207281;207282;207283;207284;207285;207286;207287;207288 127765;127766;127767;127768;127769;127770 127767 6 KIDAIISSLSITDKR Unmodified 1658.9567 0.95668521 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 2 2 31.896 30.757 2;4 3.6099E-56 14434 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 309 305.24 130240000 38481000 48474000 43288000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11049 217 10754 207289;207290;207291;207292;207293;207294 127771;127772;127773;127774 127773 3 KIDAIMSSLSITEK Unmodified 1534.8276 0.82764487 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 34.902 33.469 2;3 6.2866E-45 16026 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 322.92 306.78 485040000 105270000 98560000 83173000 0 0 0 17359000 21170000 21964000 0 0 0 17538000 19379000 18717000 0 0 0 26796000 26706000 28402000 0 0 0 11050 887 10755 207295;207296;207297;207298;207299;207300;207301;207302;207303;207304;207305;207306;207307;207308;207309;207310;207311;207312;207313;207314;207315;207316;207317 127775;127776;127777;127778;127779;127780;127781;127782;127783;127784;127785;127786;127787;127788;127789;127790;127791 127782 17 KIDFSLISSER Unmodified 1293.6929 0.69286595 1181 P21499 rnr Ribonuclease R yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 32.555 31.135 3 0.014857 14649 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 53.388 49.624 43159000 11682000 11085000 12976000 0 0 0 2813300 1998800 0 0 0 0 0 0 0 0 0 0 2604300 0 0 0 0 0 11051 1181 10756 207318;207319;207320;207321;207322;207323 127792;127793;127794 127793 3 KIDGLGIK Unmodified 842.52255 0.52255314 1456 P37095 pepB Peptidase B yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.03 16.726 2 0.00085977 5930 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.46 46.999 2200200000 135080000 152850000 113730000 0 0 0 231850000 228200000 218340000 0 0 0 187090000 201140000 172440000 1173200 762140 0 194000000 197940000 165570000 0 0 0 11052 1456 10757 207324;207325;207326;207327;207328;207329;207330;207331;207332;207333;207334;207335;207336;207337 127795;127796;127797;127798;127799;127800;127801;127802;127803;127804;127805 127795 11 KIEAALADK Unmodified 957.5495 0.54949617 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.128 12.961 1;2 0.00012092 3690 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.05 56.827 2918600000 238470000 255520000 218600000 0 0 0 261430000 241070000 265790000 0 0 0 238570000 229540000 250640000 0 0 0 245530000 242750000 230710000 0 0 0 11053 385 10758 207338;207339;207340;207341;207342;207343;207344;207345;207346;207347;207348;207349;207350;207351;207352;207353;207354;207355;207356;207357;207358;207359;207360;207361 127806;127807;127808;127809;127810;127811;127812;127813;127814;127815;127816;127817 127808 11 KIEAALADKEAELMQF Unmodified 1805.9233 0.92333617 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 1 2 2 2 41.129 39.497 2;3 8.5091E-13 19099 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 194.86 192.88 3195000000 263180000 331250000 302770000 0 0 1003000 261060000 251030000 246580000 0 1464900 0 238670000 212960000 220250000 0 2399700 0 297050000 279530000 285750000 0 0 0 11054 385 10759 207362;207363;207364;207365;207366;207367;207368;207369;207370;207371;207372;207373;207374;207375;207376;207377;207378;207379;207380;207381;207382;207383;207384;207385;207386;207387;207388 127818;127819;127820;127821;127822;127823;127824;127825;127826;127827;127828;127829;127830;127831;127832;127833;127834;127835;127836;127837;127838 127828 21 KIEALADGIMDAGLVSVR Unmodified 1857.003 0.002983473 711 P0ACA1 yibF Uncharacterized GST-like protein YibF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 45.449 43.992 2;3 5.3684E-17 21424 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 200.77 180.39 426970000 52834000 55013000 49977000 0 0 0 36251000 29848000 30545000 0 0 0 18805000 15211000 14023000 0 0 0 39340000 43884000 39633000 0 1606800 0 11055 711 10760 207389;207390;207391;207392;207393;207394;207395;207396;207397;207398;207399;207400;207401;207402;207403;207404;207405;207406;207407;207408;207409;207410;207411;207412;207413 127839;127840;127841;127842;127843;127844;127845;127846;127847;127848;127849;127850;127851;127852 127848 14 KIEFVEIYEPFSEGQAK Unmodified 2013.0095 0.0095086389 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 43.164 41.638 2;3 1.5894E-18 20348 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 220.21 208.04 1218600000 231590000 221030000 210650000 1564000 1601300 1378600 84163000 84904000 70811000 0 0 0 44606000 41626000 43106000 0 0 0 61994000 62902000 56663000 0 0 0 11056 219 10761 207414;207415;207416;207417;207418;207419;207420;207421;207422;207423;207424;207425;207426;207427;207428;207429;207430;207431;207432;207433;207434;207435;207436;207437;207438;207439;207440 127853;127854;127855;127856;127857;127858;127859;127860;127861;127862;127863;127864;127865;127866;127867;127868;127869 127862 16 KIEQIAR Unmodified 856.51305 0.51305109 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.169 11.757 2 0.001288 2492 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 138.48 19.258 1131300000 0 91776000 0 16403000 20783000 23877000 95025000 71195000 76335000 65827000 41202000 53496000 66322000 75879000 73801000 13035000 7409200 7627300 81523000 87697000 88626000 27063000 25662000 20710000 11057 1962 10762 207441;207442;207443;207444;207445;207446;207447;207448;207449;207450;207451;207452;207453;207454;207455;207456;207457;207458;207459;207460;207461;207462 127870;127871;127872;127873;127874;127875;127876;127877;127878 127872 9 KIETENQFLR Unmodified 1276.6776 0.67755023 163 P07623 metA Homoserine O-succinyltransferase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 18.016 18.57 2 0.00070715 7079 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.85 77.619 45654000 8476000 10689000 0 0 0 0 7370900 7534600 6230500 0 0 0 0 1637800 1949900 0 0 0 0 0 1765600 0 0 0 11058 163 10763 207463;207464;207465;207466;207467;207468;207469;207470 127879;127880;127881 127880 3 KIETHLEDMVAQANAQLK Unmodified 2038.0517 0.05172458 1944 P77804 ydgA Protein YdgA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 2 3 3 3 3 3 3 2 3 3 1 2 3 3 3 3 3 3 33.537 31.898 2;3;4 6.5198E-23 12253 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 206.63 193.2 976310000 16698000 13496000 10962000 7541100 10257000 8818000 77690000 65625000 68218000 118480000 87261000 114740000 29043000 43882000 40917000 8369200 10871000 0 53638000 56795000 66872000 21631000 21059000 23437000 11059 1944 10764 207471;207472;207473;207474;207475;207476;207477;207478;207479;207480;207481;207482;207483;207484;207485;207486;207487;207488;207489;207490;207491;207492;207493;207494;207495;207496;207497;207498;207499;207500;207501;207502;207503;207504;207505;207506;207507;207508;207509;207510;207511;207512;207513;207514;207515;207516;207517;207518;207519;207520;207521;207522;207523;207524;207525;207526;207527 127882;127883;127884;127885;127886;127887;127888;127889;127890;127891;127892;127893;127894;127895;127896;127897;127898;127899;127900;127901;127902;127903;127904;127905;127906;127907;127908;127909;127910 127888 25 KIFADLGAWQIAQLAR Unmodified 1800.0046 0.004638453 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 49.27 47.902 2;3 5.48E-07 23489 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.42 104.51 354210000 23288000 21515000 19227000 0 0 0 34206000 37660000 31720000 0 0 0 23504000 24663000 31424000 0 0 0 31972000 35785000 35193000 4052400 0 0 11060 651 10765 207528;207529;207530;207531;207532;207533;207534;207535;207536;207537;207538;207539;207540;207541;207542;207543;207544;207545;207546;207547;207548;207549;207550;207551;207552 127911;127912;127913;127914;127915;127916;127917;127918;127919;127920;127921;127922;127923;127924;127925 127918 14 KIFALPVIEQISPVLSR Unmodified 1909.1401 0.1400693 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.704 50.456 3 0.00087126 24567 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 64.275 64.128 116470000 7282500 6935100 6967700 0 0 0 14624000 11464000 12923000 0 0 0 10542000 8745400 7529100 0 0 0 9782800 8715000 10960000 0 0 0 11061 1510 10766 207553;207554;207555;207556;207557;207558;207559;207560;207561;207562;207563;207564 127926;127927;127928;127929;127930 127930 1 KIFTEYR Unmodified 955.51272 0.51271674 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 14.46 14.969 2 0.026447 4712 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.035 65.218 790970000 68741000 63478000 58470000 0 0 0 293550000 0 301890000 1524600 1365300 1953100 0 0 0 0 0 0 0 0 0 0 0 0 11062 212 10767 207565;207566;207567;207568;207569;207570;207571;207572 127931 127931 1 KIGLELGLPYDMLYR Unmodified 1779.9593 0.95932774 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 1 2 2 2 2 2 2 50.706 49.381 2;3 1.1841E-07 24036 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 98.654 94.685 368270000 30108000 25853000 18684000 1674400 1844300 1127900 20024000 26330000 26773000 0 0 1165000 34372000 31430000 29487000 0 0 0 43131000 41338000 34929000 0 0 0 11063 86 10768 207573;207574;207575;207576;207577;207578;207579;207580;207581;207582;207583;207584;207585;207586;207587;207588;207589;207590;207591;207592;207593;207594;207595;207596;207597;207598;207599 127932;127933;127934;127935;127936;127937;127938;127939;127940;127941;127942;127943;127944 127935 13 KIIGEQLGVK Unmodified 1083.6652 0.66519463 226 P0A6A8 acpP Acyl carrier protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 16.8 17.34 2;3 0.00020442 6145 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.03 119.96 14208000000 902520000 1103300000 1218800000 3867900 2928500 6046600 1321300000 1129400000 1155100000 10227000 13679000 11361000 1242400000 1124000000 1102600000 8412300 10104000 10154000 1258300000 1283500000 1290500000 0 0 0 11064 226 10769 207600;207601;207602;207603;207604;207605;207606;207607;207608;207609;207610;207611;207612;207613;207614;207615;207616;207617;207618;207619;207620;207621;207622;207623;207624;207625;207626;207627;207628;207629;207630;207631;207632;207633;207634;207635;207636;207637;207638;207639 127945;127946;127947;127948;127949;127950;127951;127952;127953;127954;127955;127956;127957;127958;127959;127960;127961;127962;127963;127964;127965;127966;127967;127968;127969 127960 25 KIIHPMGEIDAMEFLINK Unmodified 2098.0955 0.09550365 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 44.281 42.577 3;4 6.7151E-05 17024 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 75.674 72.873 335980000 50997000 54821000 43784000 0 0 0 10717000 8510400 8751100 34139000 38159000 35989000 5934900 5429700 9084400 0 0 0 0 16413000 13253000 0 0 0 11065 982 10770 207640;207641;207642;207643;207644;207645;207646;207647;207648;207649;207650;207651;207652;207653;207654;207655;207656;207657;207658;207659;207660;207661;207662 127970;127971;127972;127973;127974;127975;127976 127972 6 KIILCTGDMGFGACK Unmodified 1669.799 0.79900405 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 31.471 30.154 2;3 2.2377E-11 14517 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.7 160.98 343950000 24935000 26256000 21236000 0 0 0 13305000 13033000 16009000 0 0 0 30611000 37162000 37995000 0 0 0 45700000 31096000 46609000 0 0 0 11066 441 10771 207663;207664;207665;207666;207667;207668;207669;207670;207671;207672;207673;207674;207675;207676;207677;207678;207679;207680 127977;127978;127979;127980;127981;127982;127983;127984;127985;127986;127987;127988;127989 127977 13 KIISSPTWSGLEDEHVSYNAGYTNVHELIPWR Unmodified 3697.8165 0.81650992 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 1 2 1 1 2 2 2 2 45.111 43.3 4;5 3.6E-19 16992 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 155.34 150.68 492540000 0 0 0 1426200 6263300 6817300 7125300 5325400 5218200 26656000 24740000 12470000 3792100 9491300 0 0 0 0 6698900 7121300 15663000 145790000 110240000 97700000 11067 205 10772 207681;207682;207683;207684;207685;207686;207687;207688;207689;207690;207691;207692;207693;207694;207695;207696;207697;207698;207699;207700;207701;207702;207703;207704;207705;207706;207707 127990;127991;127992;127993;127994;127995;127996;127997;127998;127999;128000;128001;128002;128003;128004 128001 15 KIITNLTEGASR Unmodified 1301.7303 0.73031409 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.075 16.676 2 6.9676E-07 5767 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 154.24 138.58 205370000 15077000 15546000 9148000 1875400 2141400 1767600 22735000 18413000 16583000 7674100 6549200 0 10517000 10151000 9126800 2312600 818860 1208200 15750000 17358000 16363000 4257100 0 0 11068 1052 10773 207708;207709;207710;207711;207712;207713;207714;207715;207716;207717;207718;207719;207720;207721;207722;207723;207724;207725;207726;207727;207728 128005;128006;128007;128008;128009;128010;128011;128012;128013 128007 9 KIIVACDAGMGSSAMGAGVLR Unmodified 2063.0326 0.032585817 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 2 1 1 1 1 33.475 31.661 3 9.5337E-07 12175 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 92.932 89.337 39185000 0 0 0 2220500 2020500 2480400 0 0 0 5109400 6318500 9920300 2227400 3246500 3132600 0 0 0 0 0 0 2509300 0 0 11069 33 10774 207729;207730;207731;207732;207733;207734;207735;207736;207737;207738;207739 128014;128015 128015 2 KIIVACGGAVATSTMAAEEIK Unmodified 2119.1017 0.10171124 1461 P37188 gatB Galactitol-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 2 2 2 2 2 2 2 2 30.976 29.574 2;3 2.0146E-21 14288 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 199.49 194.51 551800000 9693100 0 8750600 0 0 0 100140000 92987000 80333000 0 0 0 44821000 36842000 44332000 0 0 0 42740000 48335000 42830000 0 0 0 11070 1461 10775 207740;207741;207742;207743;207744;207745;207746;207747;207748;207749;207750;207751;207752;207753;207754;207755;207756;207757;207758;207759 128016;128017;128018;128019;128020;128021;128022;128023 128016 8 KIIVDTYGGMAR Unmodified 1322.7017 0.70165649 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 21.553 21.635 2;3 1.1178E-16 8553 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 208.25 198.3 908960000 66733000 74222000 61372000 6769900 8955000 7599500 45314000 122010000 117670000 21752000 16435000 13884000 47764000 45005000 18866000 0 0 0 78597000 77405000 74429000 2566800 691430 908700 11071 388 10776 207760;207761;207762;207763;207764;207765;207766;207767;207768;207769;207770;207771;207772;207773;207774;207775;207776;207777;207778;207779;207780;207781;207782;207783;207784;207785;207786;207787;207788;207789;207790;207791;207792;207793;207794;207795;207796;207797;207798 128024;128025;128026;128027;128028;128029;128030;128031;128032;128033;128034;128035;128036;128037;128038;128039;128040;128041;128042;128043;128044;128045;128046;128047;128048;128049;128050 128044 27 KILADIAVFDK Unmodified 1231.7176 0.71762413 354 P0A7L3 rplT 50S ribosomal protein L20 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 2 2 34.919 33.406 2;3 0.00055766 16040 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.625 78.284 298870000 37069000 34839000 26764000 3075300 3443700 3195400 13084000 10469000 10662000 7967200 2824200 5318500 13549000 13284000 12033000 3357800 5217600 6516400 24192000 24022000 21557000 5159500 4418200 6856300 11072 354 10777 207799;207800;207801;207802;207803;207804;207805;207806;207807;207808;207809;207810;207811;207812;207813;207814;207815;207816;207817;207818;207819;207820;207821;207822;207823;207824;207825;207826;207827;207828;207829;207830;207831;207832;207833;207834;207835;207836;207837;207838;207839;207840;207841;207842;207843;207844 128051;128052;128053;128054;128055;128056;128057;128058;128059;128060;128061;128062;128063 128053 13 KILEEAVSTALELASGK Unmodified 1757.9775 0.97748023 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 2 1 1 2 2 2 1 2 2 2 51.902 50.674 2;3 1.2097E-15 24672 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.15 129.49 487170000 29559000 47989000 39942000 1240300 1086300 0 44174000 43688000 42256000 1850200 2345500 0 33800000 36078000 29806000 1084200 0 0 43204000 44339000 44732000 0 0 0 11073 948 10778 207845;207846;207847;207848;207849;207850;207851;207852;207853;207854;207855;207856;207857;207858;207859;207860;207861;207862;207863;207864;207865;207866;207867;207868;207869;207870;207871;207872 128064;128065;128066;128067;128068;128069;128070;128071;128072;128073;128074;128075;128076;128077 128067 14 KILEVSGCDPQTTELDGKPLADHLLAPTR Unmodified 3173.6391 0.63906282 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 1 2 2 2 2 1 2 1 2 2 2 35.517 33.796 4;5 4.0148E-16 16228 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 139.72 135.06 730590000 178080000 181470000 169060000 13010000 12501000 11270000 17667000 8090300 11770000 6371200 5979700 5614800 8735200 13981000 7675200 0 0 0 24948000 25762000 28589000 0 0 0 11074 174 10779 207873;207874;207875;207876;207877;207878;207879;207880;207881;207882;207883;207884;207885;207886;207887;207888;207889;207890;207891;207892;207893;207894;207895;207896;207897;207898;207899;207900;207901;207902;207903;207904;207905 128078;128079;128080;128081;128082;128083;128084;128085;128086 128082 9 KILPDPK Unmodified 809.50109 0.50108942 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.649 13.266 2 0.019312 3867 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.784 35.017 738750000 1459100 0 0 7142600 6808500 6868800 56596000 44571000 49832000 29402000 27005000 26664000 59171000 58962000 64837000 6951200 5452200 5816500 87989000 89029000 81379000 0 9887600 12921000 11075 67 10780 207906;207907;207908;207909;207910;207911;207912;207913;207914;207915;207916;207917;207918;207919;207920;207921;207922;207923;207924;207925;207926 128087;128088;128089;128090;128091;128092;128093 128090 7 KINMMEQVLDIPSQEVISK Unmodified 2201.1436 0.14357605 576 P0AA53 qmcA Protein QmcA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.181 43.442 3 0.10392 17480 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 32.695 25.897 66006000 2714900 2654800 0 913990 1069300 965820 10944000 7990400 10703000 5900000 4824500 4360800 5306200 2441200 0 0 0 0 0 0 3649700 0 0 1567900 11076 576 10781 207927;207928;207929;207930;207931;207932;207933;207934;207935;207936;207937;207938;207939;207940;207941 128094 128094 0 KINTDCDK Unmodified 992.45969 0.45969489 40 P00805 ansB L-asparaginase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 4.8215 5.7096 2 1.6933E-05 1059 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 178.3 162.15 526410000 0 0 0 0 0 0 111890000 118690000 87104000 0 0 0 47649000 47141000 43833000 0 0 0 21821000 23415000 24869000 0 0 0 11077 40 10782 207942;207943;207944;207945;207946;207947;207948;207949;207950 128095;128096;128097 128097 3 KINTDCDKTDGFVITHGTDTMEETAYFLDLTVK Unmodified 3777.7754 0.77535789 40 P00805 ansB L-asparaginase 2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 50.029 48.601 3;4;5 2.6542E-44 24050 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 223.71 221.92 1716300000 0 0 0 0 0 0 280500000 247290000 240340000 0 0 0 178050000 149950000 185620000 0 0 0 145900000 148250000 140360000 0 0 0 11078 40 10783 207951;207952;207953;207954;207955;207956;207957;207958;207959;207960;207961;207962;207963;207964;207965;207966;207967;207968;207969;207970;207971;207972;207973;207974;207975;207976;207977 128098;128099;128100;128101;128102;128103;128104;128105;128106;128107;128108;128109;128110;128111;128112;128113;128114;128115;128116;128117 128103 20 KIPHGDIR Unmodified 934.53485 0.53484916 1333 P29745 pepT Peptidase T yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 10.493 11.348 2 0.036035 2728 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 64.265 54.515 141920000 52274000 0 0 0 0 0 0 0 0 0 0 0 28318000 0 20776000 0 0 0 18274000 4729300 17545000 0 0 0 11079 1333 10784 207978;207979;207980;207981;207982;207983 128118 128118 1 KIPPEVLTSLNSIDDPAR Unmodified 1964.0579 0.057855815 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.295 37.639 3 0.0020662 15308 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 59.281 55.378 207240000 5167700 11747000 16046000 666850 0 375400 12978000 17803000 15692000 5977200 5193500 3590000 11898000 13646000 12359000 0 8513400 12276000 15236000 15877000 17544000 0 1808500 2842400 11080 536 10785 207984;207985;207986;207987;207988;207989;207990;207991;207992;207993;207994;207995;207996;207997;207998;207999;208000;208001;208002;208003;208004 128119;128120;128121;128122;128123;128124;128125;128126;128127;128128;128129;128130 128120 10 KIQAQYPQEVITTVR Unmodified 1772.9785 0.97848328 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.375 25.468 3 0.0001848 11917 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 70.197 57.357 130660000 13498000 13596000 10934000 0 0 0 10748000 11408000 10472000 0 0 0 7275000 7641100 6654500 0 2923700 3244800 12261000 10087000 9918800 0 0 0 11081 1214 10786 208005;208006;208007;208008;208009;208010;208011;208012;208013;208014;208015;208016;208017;208018 128131;128132;128133 128131 3 KISADQVDQEVER Unmodified 1515.7529 0.75290002 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 3 2 2 2 2 2 2 1 1 2 2 2 2 16.003 16.654 2;3;4 1.3174E-23 5411 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 228.12 200.63 3178200000 163470000 173120000 188060000 0 0 0 356910000 317550000 291860000 0 0 21621000 263610000 244410000 248040000 21505000 28880000 32918000 270780000 276910000 278550000 0 0 0 11082 192 10787 208019;208020;208021;208022;208023;208024;208025;208026;208027;208028;208029;208030;208031;208032;208033;208034;208035;208036;208037;208038;208039;208040;208041;208042;208043;208044;208045;208046;208047;208048;208049 128134;128135;128136;128137;128138;128139;128140;128141;128142;128143 128143 10 KISAGIR Unmodified 743.46537 0.46537261 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.79 11.645 2 0.0010662 2898 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.18 59.153 1006100000 0 0 0 0 0 0 100530000 85226000 96518000 0 0 0 66095000 69941000 58672000 0 0 0 166950000 177920000 184240000 0 0 0 11083 1264 10788 208050;208051;208052;208053;208054;208055;208056;208057;208058;208059;208060;208061 128144;128145;128146;128147;128148;128149;128150;128151;128152;128153 128146 10 KISAQMGYHDYPF Unmodified 1555.7129 0.71294946 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 29.616 28.493 2;3 0.014278 12840 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 45.28 40.889 199540000 15633000 15960000 16445000 0 0 0 18064000 18800000 17841000 0 0 0 13795000 10914000 12936000 1908800 1486800 975880 16339000 18913000 19526000 0 0 0 11084 1845 10789 208062;208063;208064;208065;208066;208067;208068;208069;208070;208071;208072;208073;208074;208075;208076;208077;208078 128154;128155;128156;128157;128158;128159;128160;128161;128162;128163 128161 10 KISEHLLPR Unmodified 1091.6451 0.64512789 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 2 1 2 13.764 14.402 2;3 7.6011E-05 4375 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 146.27 95.643 1672300000 114440000 173260000 163720000 4684900 2840300 4491500 138370000 117710000 120980000 3100300 2928000 1822000 112910000 121400000 90319000 1565200 1803800 1914400 165700000 140870000 173140000 5914600 3957300 4417300 11085 1143 10790 208079;208080;208081;208082;208083;208084;208085;208086;208087;208088;208089;208090;208091;208092;208093;208094;208095;208096;208097;208098;208099;208100;208101;208102;208103;208104;208105;208106;208107;208108;208109;208110;208111;208112;208113;208114;208115;208116;208117;208118;208119 128164;128165;128166;128167;128168;128169;128170;128171;128172;128173;128174;128175;128176;128177;128178;128179;128180;128181;128182;128183;128184;128185;128186;128187;128188;128189;128190 128174 26 KISNGEGVER Unmodified 1087.5622 0.56218613 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 2 2 10.178 10.781 2;3 2.5184E-06 1992 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 158.76 142.55 915510000 104210000 112210000 99555000 0 3647000 914710 23664000 25400000 19679000 25795000 18373000 21432000 44042000 47629000 40729000 11776000 13653000 19133000 79372000 86078000 29124000 14119000 40020000 34957000 11086 352 10791 208120;208121;208122;208123;208124;208125;208126;208127;208128;208129;208130;208131;208132;208133;208134;208135;208136;208137;208138;208139;208140;208141;208142;208143;208144;208145;208146;208147;208148;208149;208150;208151;208152;208153;208154;208155;208156;208157;208158;208159;208160;208161 128191;128192;128193;128194;128195;128196;128197;128198;128199;128200;128201;128202;128203;128204;128205;128206 128198 16 KISVMGHGMGIPSCSIYTK Unmodified 2065.0159 0.01587312 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 3 3 3 28.083 26.889 2;3;4 9.0639E-14 12570 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 154.81 146.77 1101400000 29958000 19871000 24962000 0 0 0 189770000 221820000 212610000 0 0 0 20405000 24872000 22865000 0 0 0 104240000 113190000 116800000 0 0 0 11087 669 10792 208162;208163;208164;208165;208166;208167;208168;208169;208170;208171;208172;208173;208174;208175;208176;208177;208178;208179;208180;208181;208182;208183;208184;208185;208186;208187;208188;208189;208190;208191 128207;128208;128209;128210;128211;128212;128213;128214;128215;128216;128217;128218;128219;128220;128221;128222;128223;128224 128213 18 KISWMEIYTGEK Unmodified 1483.7381 0.73810158 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 35.688 34.017 2;3 2.0421E-13 16157 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.26 140.89 6128500000 878200000 999890000 881290000 1280100 1582300 1195900 327250000 319740000 289670000 1959000 1791700 0 345280000 311880000 294740000 0 0 0 567740000 570360000 331530000 0 1282200 1866300 11088 179 10793 208192;208193;208194;208195;208196;208197;208198;208199;208200;208201;208202;208203;208204;208205;208206;208207;208208;208209;208210;208211;208212;208213;208214;208215;208216;208217;208218;208219;208220;208221;208222 128225;128226;128227;128228;128229;128230;128231;128232;128233;128234;128235;128236;128237;128238;128239;128240;128241;128242;128243;128244;128245;128246;128247 128236 23 KITEQGVHFR Unmodified 1213.6568 0.65675521 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 1 By MS/MS 1 13.168 13.168 2 0.00033249 3129 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 96.711 81.56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11089 395 10794 208223 128248 128248 1 KITLQNGK Unmodified 900.53927 0.53926584 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.664 11.479 2 0.023189 2809 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 66.429 39.633 385220000 56887000 50362000 49451000 0 0 0 23069000 16008000 20531000 0 0 0 16728000 18719000 16971000 0 0 0 41740000 35550000 39204000 0 0 0 11090 179 10795 208224;208225;208226;208227;208228;208229;208230;208231;208232;208233;208234;208235 128249 128249 1 KITQGDDLAPGVLK Unmodified 1453.814 0.81404372 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 3 2 2 2 2 2 2 2 3 2 2 2 3 3 2 23.093 22.372 2;3 2.469E-14 7495 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 223.22 198.36 22407000000 94165000 82933000 81215000 5294700 6139400 5991100 122740000 117400000 126080000 1566700000 1412300000 930430000 149170000 148920000 151300000 3770800000 3952200000 3702100000 178410000 184180000 198550000 1709100000 1910500000 1800000000 11091 463 10796 208236;208237;208238;208239;208240;208241;208242;208243;208244;208245;208246;208247;208248;208249;208250;208251;208252;208253;208254;208255;208256;208257;208258;208259;208260;208261;208262;208263;208264;208265;208266;208267;208268;208269;208270;208271;208272;208273;208274;208275;208276;208277;208278;208279;208280;208281 128250;128251;128252;128253;128254;128255;128256;128257;128258;128259;128260;128261;128262;128263;128264;128265;128266;128267;128268;128269;128270;128271;128272;128273;128274;128275;128276;128277;128278;128279;128280;128281;128282;128283;128284;128285;128286;128287;128288;128289;128290;128291;128292;128293;128294;128295;128296;128297;128298 128280 49 KITVVPILR Unmodified 1037.6961 0.69610083 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 27.93 26.755 2 0.00026872 11669 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 125.31 125.31 1841500000 195790000 205430000 150970000 2580400 0 0 73421000 69424000 65981000 0 0 0 150850000 130960000 122350000 0 0 0 234410000 215090000 224220000 0 0 0 11092 424 10797 208282;208283;208284;208285;208286;208287;208288;208289;208290;208291;208292;208293;208294 128299;128300;128301;128302;128303;128304;128305;128306;128307 128305 9 KIVADAMGALR Unmodified 1143.6434 0.64341333 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 22.043 22.076 3 0.00013319 8625 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 72.848 57.836 91792000 4972000 0 4260800 0 0 0 7989600 10287000 10784000 0 0 0 9981300 8036000 7784300 0 0 0 8274200 8551000 10872000 0 0 0 11093 1189 10798 208295;208296;208297;208298;208299;208300;208301;208302;208303;208304;208305 128308;128309;128310;128311;128312;128313;128314 128313 7 KIVFLGAGSAGCGIAEMIISQTQR Unmodified 2506.3036 0.30359894 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.125 50.877 3 9.1556E-11 24804 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.64 129.75 387170000 18006000 18757000 17366000 0 0 0 22358000 27502000 30417000 0 0 0 33683000 30878000 34188000 0 0 0 53435000 53321000 47255000 0 0 0 11094 1283 10799 208306;208307;208308;208309;208310;208311;208312;208313;208314;208315;208316;208317 128315;128316;128317;128318;128319;128320;128321;128322 128317 8 KIVTEGDK Unmodified 888.49165 0.49164694 1719 P68191 sra Stationary-phase-induced ribosome-associated protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 8.3077 8.992 2 0.00087281 1830 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.02 91.528 537070000 153930000 135640000 122150000 0 0 0 7933000 0 0 18015000 16665000 19659000 11070000 8981800 11012000 0 0 0 10040000 11953000 10023000 0 0 0 11095 1719 10800 208318;208319;208320;208321;208322;208323;208324;208325;208326;208327;208328;208329;208330 128323;128324;128325;128326;128327;128328;128329;128330;128331 128327 9 KIVTEGDKSSVVNNPTGR Unmodified 1900.0014 0.0014035686 1719 P68191 sra Stationary-phase-induced ribosome-associated protein yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 3 2 1 12.604 13.125 3;4 2.6399E-17 3194 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 155.03 144.55 102230000 0 0 0 4409100 6489000 5065800 0 0 0 27438000 30881000 26151000 0 0 0 0 0 0 0 0 0 1792300 0 0 11096 1719 10801 208331;208332;208333;208334;208335;208336;208337;208338;208339;208340;208341;208342 128332;128333;128334;128335;128336;128337;128338 128332 7 KIVVSVAADIMALVLLTAPGK Unmodified 2108.2643 0.26428354 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By MS/MS 1 55.663 54.31 3 7.0412E-07 20047 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 94.384 91.993 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11097 1409 10802 208343 128339 128339 1 KIYAAFK Unmodified 839.49052 0.49052473 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 3 1 2 2 2 2 3 2 2 2 1 1 1 2 2 2 2 2 2 13.752 14.415 1;2 8.3608E-05 3799 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 137.44 98.618 7124400000 103360000 70349000 77633000 1061400000 1145800000 1043100000 5274400 139820000 136170000 115640000 104200000 112260000 90360000 94995000 85507000 43016000 27989000 0 162180000 179390000 172300000 720700000 751850000 681080000 11098 939 10803 208344;208345;208346;208347;208348;208349;208350;208351;208352;208353;208354;208355;208356;208357;208358;208359;208360;208361;208362;208363;208364;208365;208366;208367;208368;208369;208370;208371;208372;208373;208374;208375;208376;208377;208378;208379;208380;208381;208382;208383;208384;208385;208386;208387 128340;128341;128342;128343;128344;128345;128346;128347;128348;128349;128350;128351;128352;128353;128354;128355;128356;128357;128358;128359;128360;128361;128362;128363;128364;128365;128366 128342 27 KIYAAFKK Unmodified 967.58549 0.58548775 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 11.894 12.282 2 0.0058875 2666 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 108.92 95.717 1558200000 0 0 0 476820000 499800000 0 0 0 0 11594000 10242000 11202000 0 0 0 12907000 0 0 0 0 0 113780000 171350000 250480000 11099 939 10804 208388;208389;208390;208391;208392;208393;208394;208395;208396;208397 128367;128368;128369;128370;128371;128372;128373;128374 128374 8 KIYADKLEQEK Unmodified 1363.7347 0.73473076 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 2 2 2 2 2 1 2 1 1 2 2 2 2 2 2 12.08 12.699 2;3 4.2722E-26 3486 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 280.09 229.62 1389100000 38346000 40485000 42555000 7475600 8252700 4348100 71739000 72136000 80000000 8344000 7192700 5520900 115750000 78060000 32237000 5383300 3970400 2545500 237220000 249400000 221550000 22793000 15495000 18310000 11100 937 10805 208398;208399;208400;208401;208402;208403;208404;208405;208406;208407;208408;208409;208410;208411;208412;208413;208414;208415;208416;208417;208418;208419;208420;208421;208422;208423;208424;208425;208426;208427;208428;208429;208430;208431;208432;208433;208434;208435;208436;208437;208438 128375;128376;128377;128378;128379;128380;128381;128382;128383;128384;128385;128386;128387;128388;128389;128390;128391;128392;128393;128394;128395;128396;128397 128388 23 KKEEPAAAPAPTK Unmodified 1336.7351 0.73506511 308 P0A742 mscL Large-conductance mechanosensitive channel yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 9.0753 9.8751 2;3 1.3353E-11 1266 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 184.31 154.06 248580000 42661000 37212000 35180000 0 0 0 9283300 5206600 4364000 0 0 5985500 17047000 15841000 14540000 0 0 0 23999000 15477000 21788000 0 0 0 11101 308 10806 208439;208440;208441;208442;208443;208444;208445;208446;208447;208448;208449;208450;208451 128398;128399;128400;128401;128402 128398 5 KKYEQEIDVR Unmodified 1306.6881 0.68811492 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 3 3 2 2 2 2 3 2 11.962 12.52 2;3 8.6471E-23 2744 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 303.22 287.33 6056700000 48756000 54957000 50547000 4002000 3405700 3494300 34372000 35185000 42013000 325810000 364070000 321880000 56257000 28734000 26727000 772130000 755140000 563350000 48044000 45494000 53253000 872930000 808640000 737550000 11102 935 10807 208452;208453;208454;208455;208456;208457;208458;208459;208460;208461;208462;208463;208464;208465;208466;208467;208468;208469;208470;208471;208472;208473;208474;208475;208476;208477;208478;208479;208480;208481;208482;208483;208484;208485;208486;208487;208488;208489;208490;208491;208492;208493;208494;208495;208496;208497;208498;208499;208500 128403;128404;128405;128406;128407;128408;128409;128410;128411;128412;128413;128414;128415;128416;128417;128418;128419;128420 128417 18 KLADAPER Unmodified 898.48723 0.48723027 890 P0AEW4 cpdA 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.495 11.288 2 0.10457 2675 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 52.716 33.154 169630000 14265000 14648000 15785000 0 0 0 32581000 25591000 27008000 0 0 0 0 7651700 6808500 0 0 0 14709000 0 10587000 0 0 0 11103 890 10808 208501;208502;208503;208504;208505;208506;208507;208508;208509;208510 128421 128421 1 KLADSGLNIIAAK Unmodified 1312.7715 0.77145062 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 2 2 2 26.555 25.49 2;3 2.137E-12 10844 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 193.22 130.39 6282600000 768010000 749780000 656660000 6307900 5421000 5764800 247640000 278920000 107720000 1151600 0 2806100 364320000 391370000 333990000 1706300 1706000 1338500 781460000 840550000 717370000 5829400 6108600 6650000 11104 392 10809 208511;208512;208513;208514;208515;208516;208517;208518;208519;208520;208521;208522;208523;208524;208525;208526;208527;208528;208529;208530;208531;208532;208533;208534;208535;208536;208537;208538;208539;208540;208541;208542;208543;208544;208545;208546;208547;208548;208549;208550;208551 128422;128423;128424;128425;128426;128427;128428;128429;128430;128431;128432;128433;128434;128435;128436;128437;128438;128439;128440;128441;128442 128442 21 KLAEAQEELK Unmodified 1157.6292 0.62920306 1556 P42616 yqjC Protein YqjC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.166 12.999 2 1.3117E-08 3718 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 181.87 112.68 418460000 18673000 21702000 18335000 0 0 0 53739000 45279000 46375000 0 0 0 36514000 32335000 33406000 0 0 0 38733000 34797000 38574000 0 0 0 11105 1556 10810 208552;208553;208554;208555;208556;208557;208558;208559;208560;208561;208562;208563 128443;128444;128445;128446;128447;128448;128449;128450;128451;128452;128453 128450 10 KLAEAQEELKK Unmodified 1285.7242 0.72416608 1556 P42616 yqjC Protein YqjC yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 11.065 11.881 2 0.0018674 2970 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.187 43.026 82775000 0 5341500 5162200 0 0 0 14419000 17149000 13592000 0 0 0 10008000 9136700 7966800 0 0 0 0 0 0 0 0 0 11106 1556 10811 208564;208565;208566;208567;208568;208569;208570;208571 128454 128454 1 KLAEGLDALVMDVK Unmodified 1500.8222 0.82216556 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 41.008 39.308 2;3 1.0392E-06 18220 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 148.91 142.61 1363800000 48790000 48078000 43852000 0 0 0 224570000 173750000 169190000 0 959780 0 109050000 96041000 111170000 0 0 0 109880000 121620000 106870000 0 0 0 11107 167 10812 208572;208573;208574;208575;208576;208577;208578;208579;208580;208581;208582;208583;208584;208585;208586;208587;208588;208589;208590;208591;208592;208593;208594;208595;208596 128455;128456;128457;128458;128459;128460;128461;128462;128463;128464;128465;128466;128467;128468;128469;128470;128471;128472;128473;128474;128475 128475 21 KLAEHALEK Unmodified 1037.5869 0.58694431 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.738 11.235 2 4.2179E-06 2563 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 175.88 88.187 719770000 2290100 0 0 0 0 0 94956000 96398000 88493000 66314000 53982000 56390000 39533000 36211000 25372000 12397000 2480900 3955700 42064000 43749000 32716000 7903400 7032900 7538600 11108 1088 10813 208597;208598;208599;208600;208601;208602;208603;208604;208605;208606;208607;208608;208609;208610;208611;208612;208613;208614;208615 128476;128477;128478;128479;128480;128481;128482;128483;128484;128485;128486;128487 128480 12 KLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALK Unmodified 3647.7674 0.76737616 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 2 2 2 2 2 1 53.009 51.585 3;4 1.3918E-13 25577 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.9 113.36 1038100000 71823000 57200000 53708000 0 0 0 117620000 103030000 106240000 0 0 0 106490000 109090000 96030000 0 0 0 66495000 75080000 75307000 0 0 0 11109 697 10814 208616;208617;208618;208619;208620;208621;208622;208623;208624;208625;208626;208627;208628;208629;208630;208631;208632;208633;208634;208635;208636 128488;128489;128490;128491;128492;128493;128494;128495;128496;128497;128498 128489 11 KLAGNLK Unmodified 742.47012 0.47012364 343 P0A7G6 recA Protein RecA yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.623 11.213 2 0.0020078 2247 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 127.1 36.004 1278000000 70004000 63259000 76350000 7750400 3471200 8580600 103640000 80859000 97492000 75250000 69413000 75515000 45446000 44841000 44465000 23247000 23921000 30647000 87399000 76460000 87419000 26111000 29566000 26869000 11110 343 10815 208637;208638;208639;208640;208641;208642;208643;208644;208645;208646;208647;208648;208649;208650;208651;208652;208653;208654;208655;208656;208657;208658;208659;208660 128499;128500;128501;128502;128503;128504 128500 6 KLAIAASSLWK Unmodified 1186.7074 0.7073938 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 30.175 28.78 2;3 3.9379E-07 13260 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.78 122.34 2695500000 766550000 716140000 667500000 3682600 3117100 2950700 79117000 80790000 73482000 0 0 0 41585000 38314000 39204000 0 0 0 60422000 67126000 55476000 0 0 0 11111 1217 10816 208661;208662;208663;208664;208665;208666;208667;208668;208669;208670;208671;208672;208673;208674;208675;208676;208677;208678;208679;208680;208681;208682;208683;208684;208685;208686;208687;208688;208689;208690 128505;128506;128507;128508;128509;128510;128511;128512;128513;128514;128515;128516;128517;128518;128519;128520;128521;128522;128523;128524;128525;128526;128527 128523 23 KLASGLYTWLPTGVR Unmodified 1660.9301 0.93007653 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 41.579 39.899 3 0.0011678 19828 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.52 58.805 217540000 15911000 16580000 15305000 0 666100 0 15227000 13337000 15703000 0 0 0 21406000 15112000 14272000 0 0 0 23931000 25006000 25083000 0 0 0 11112 1120 10817 208691;208692;208693;208694;208695;208696;208697;208698;208699;208700;208701;208702;208703 128528 128528 1 KLAVPLIK Unmodified 880.61097 0.61097422 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.285 22.556 2 0.00036252 10152 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.69 147.69 533340000 27096000 26196000 25587000 0 439190 437470 47211000 34062000 41750000 0 0 0 49092000 42808000 39904000 0 0 0 62966000 68022000 67769000 0 0 0 11113 1489 10818 208704;208705;208706;208707;208708;208709;208710;208711;208712;208713;208714;208715;208716;208717 128529;128530;128531;128532;128533;128534;128535;128536;128537;128538 128529 10 KLDAVVEDCVNAVGVDLNTASVPLLTR Unmodified 2867.5063 0.50625774 1586 P46837 yhgF Protein YhgF yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 52.309 51.053 3 0.00093746 24869 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.565 56.262 342460000 26466000 24043000 0 0 0 0 22575000 26784000 25704000 0 0 0 23386000 26443000 25902000 0 0 0 43712000 51103000 46340000 0 0 0 11114 1586 10819 208718;208719;208720;208721;208722;208723;208724;208725;208726;208727;208728 128539;128540;128541;128542;128543 128540 5 KLDDLPK Unmodified 827.47527 0.4752686 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.725 13.566 2 0.0029693 4023 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 113.5 42.591 459670000 29345000 27206000 31857000 0 0 0 37586000 40400000 43627000 0 0 0 35302000 35088000 28243000 0 0 0 56050000 50295000 44672000 0 0 0 11115 1221 10820 208729;208730;208731;208732;208733;208734;208735;208736;208737;208738;208739;208740 128544;128545;128546;128547;128548;128549;128550;128551;128552 128549 9 KLDELDLIVVDHPQVK Unmodified 1860.0357 0.03566381 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 3 3 3 3 3 3 3 36.091 34.528 2;3;4 1.1206E-23 16920 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 244.23 236.62 2216700000 143060000 140470000 104910000 0 0 0 278550000 271480000 240910000 0 0 0 172340000 162480000 143090000 0 0 0 173060000 202120000 184190000 0 0 0 11116 1510 10821 208741;208742;208743;208744;208745;208746;208747;208748;208749;208750;208751;208752;208753;208754;208755;208756;208757;208758;208759;208760;208761;208762;208763;208764;208765;208766;208767;208768;208769;208770;208771;208772;208773;208774;208775 128553;128554;128555;128556;128557;128558;128559;128560;128561;128562;128563;128564;128565;128566;128567;128568;128569;128570;128571;128572;128573;128574;128575;128576;128577;128578 128561 26 KLDETTR Unmodified 861.4556 0.45559579 1235 P24178 yffB Protein YffB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1 1 1 1 1 2 2 2 1 1 1 5.5315 6.4493 2 0.0024752 1152 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.49 65.702 367610000 25590000 27995000 28445000 4405700 3818800 3651600 61470000 0 49195000 0 0 0 39898000 34969000 34340000 0 0 0 20590000 17993000 15246000 0 0 0 11117 1235 10822 208776;208777;208778;208779;208780;208781;208782;208783;208784;208785;208786;208787;208788;208789;208790;208791;208792;208793;208794;208795 128579;128580;128581;128582;128583;128584;128585;128586;128587;128588;128589;128590;128591 128581 13 KLDMVPVECVVR Unmodified 1443.7578 0.75779117 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 1 2 2 2 1 1 1 2 2 2 31.313 29.972 2;3 9.0836E-11 14002 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.5 115.76 2649100000 682790000 349720000 578150000 5903400 6032100 3963800 122590000 123750000 121970000 2788300 3586000 0 84430000 96541000 82917000 1203000 994140 1678200 131130000 124700000 124300000 0 0 0 11118 334 10823 208796;208797;208798;208799;208800;208801;208802;208803;208804;208805;208806;208807;208808;208809;208810;208811;208812;208813;208814;208815;208816;208817;208818;208819;208820;208821;208822;208823;208824;208825;208826;208827;208828;208829 128592;128593;128594;128595;128596;128597;128598;128599;128600;128601;128602;128603;128604;128605;128606;128607;128608;128609;128610;128611;128612;128613;128614;128615;128616;128617;128618;128619 128611 28 KLDQAGVSELATNQK Unmodified 1600.842 0.84204938 403 P0A873 trmD tRNA (guanine-N(1)-)-methyltransferase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 17.665 18.324 2;3 1.3591E-68 6726 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 323.68 294.73 290960000 25853000 25388000 20846000 0 242150 0 17469000 17237000 15604000 0 0 576210 20587000 18839000 22578000 0 0 0 31759000 39726000 34254000 0 0 0 11119 403 10824 208830;208831;208832;208833;208834;208835;208836;208837;208838;208839;208840;208841;208842;208843;208844;208845;208846;208847;208848;208849;208850;208851;208852;208853;208854;208855 128620;128621;128622;128623;128624;128625;128626;128627;128628;128629;128630;128631;128632;128633;128634;128635;128636 128629 17 KLDSEHNK Unmodified 969.48796 0.48795855 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 3 2 1 1 1 1 1 1 4.3388 5.206 2 0.00080045 1082 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 129.47 90.66 118030000 22890000 25853000 24015000 0 0 0 2022700 3255300 2199200 0 0 0 6201000 4925100 4282500 0 0 0 7474000 8212200 6698800 0 0 0 11120 1420 10825 208856;208857;208858;208859;208860;208861;208862;208863;208864;208865;208866;208867;208868;208869;208870 128637;128638;128639;128640;128641;128642;128643;128644;128645;128646 128642 10 KLDTQLVNAGR Unmodified 1213.6779 0.67788459 130 P06721 metC Cystathionine beta-lyase MetC yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.101 16.917 2;3 0.00017038 5965 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 66.664 54.933 239850000 29121000 28396000 26339000 0 0 0 23793000 30527000 28775000 0 0 0 10827000 11547000 10813000 0 0 0 14540000 12081000 13086000 0 0 0 11121 130 10826 208871;208872;208873;208874;208875;208876;208877;208878;208879;208880;208881;208882;208883;208884;208885;208886;208887;208888;208889;208890;208891;208892;208893;208894 128647;128648;128649;128650;128651;128652;128653 128649 7 KLDVEAPHEVMLTIDASTGQNAVSQAK Unmodified 2851.4386 0.4385721 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.271 35.656 4 1.8832E-07 17124 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 98.326 92.166 298880000 18370000 16762000 12107000 2178200 2852400 2379100 31913000 30931000 25127000 9425200 6620900 9545700 14319000 13029000 13632000 3155500 1997900 2134800 21437000 22410000 21810000 6607000 5128600 5006900 11122 1052 10827 208895;208896;208897;208898;208899;208900;208901;208902;208903;208904;208905;208906;208907;208908;208909;208910;208911;208912;208913;208914;208915;208916;208917;208918 128654;128655;128656;128657;128658;128659;128660;128661;128662;128663;128664;128665 128664 12 KLDVVTQVCPFPLIEAK Unmodified 1956.0754 0.075420135 1403 P33014 yeeD UPF0033 protein YeeD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 45.794 44.266 2;3 1.9087E-39 22098 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 306.92 300.97 3176400000 214640000 222070000 207840000 5868100 4379400 5904000 251630000 228930000 230940000 19451000 18826000 20297000 239220000 215570000 204470000 7331800 6089500 7095400 321080000 361840000 329930000 17540000 16863000 18601000 11123 1403 10828 208919;208920;208921;208922;208923;208924;208925;208926;208927;208928;208929;208930;208931;208932;208933;208934;208935;208936;208937;208938;208939;208940;208941;208942;208943;208944;208945;208946;208947;208948;208949;208950;208951;208952;208953;208954;208955;208956;208957;208958;208959;208960 128666;128667;128668;128669;128670;128671;128672;128673;128674;128675;128676;128677;128678;128679;128680;128681;128682;128683;128684;128685;128686;128687;128688;128689;128690;128691;128692;128693;128694;128695;128696;128697;128698;128699;128700;128701;128702 128673 36 KLEDELGVMLLER Unmodified 1543.828 0.82797922 741 P0ACQ4 oxyR Hydrogen peroxide-inducible genes activator yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 45.046 43.981 3 7.7534E-06 21447 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.98 86.05 68024000 9131500 10275000 12070000 0 0 0 4187900 4569700 0 0 0 0 2818900 0 2410200 3980100 3365800 2040100 3722300 5259900 4192600 0 0 0 11124 741 10829 208961;208962;208963;208964;208965;208966;208967;208968;208969;208970;208971;208972;208973 128703;128704;128705;128706;128707;128708 128707 3 KLEDLLAAK Unmodified 999.59645 0.59644637 401 P0A867 talA Transaldolase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.812 23.744 2 3.3949E-06 10586 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 176.78 133.02 3057400000 613380000 472170000 452280000 0 593680 393190 365910000 346640000 332200000 485940 0 0 64535000 56866000 59020000 0 0 0 114170000 90654000 88122000 0 0 0 11125 401 10830 208974;208975;208976;208977;208978;208979;208980;208981;208982;208983;208984;208985;208986;208987;208988 128709;128710;128711;128712;128713;128714;128715;128716;128717;128718;128719;128720 128712 12 KLEEEAR Unmodified 873.4556 0.45559579 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 7.4856 8.2478 2 0.0094813 1798 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.777 58.306 64676000 22697000 19222000 17901000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4856200 0 0 0 11126 297 10831 208989;208990;208991;208992 128721;128722;128723;128724 128722 4 KLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFR Unmodified 4271.1031 0.10311481 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 3 2 2 1 1 1 3 3 2 2 2 2 55.783 54.448 4;5 4.3174E-39 26611 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 201.9 201.64 3061700000 54625000 48457000 0 43591000 50628000 48699000 135820000 104980000 198200000 109280000 142320000 158380000 218130000 203900000 208820000 41535000 47258000 57250000 256840000 279130000 263920000 126910000 125930000 137150000 11127 645 10832 208993;208994;208995;208996;208997;208998;208999;209000;209001;209002;209003;209004;209005;209006;209007;209008;209009;209010;209011;209012;209013;209014;209015;209016;209017;209018;209019;209020;209021;209022;209023;209024;209025;209026;209027;209028;209029;209030;209031;209032;209033;209034;209035;209036 128725;128726;128727;128728;128729;128730;128731;128732;128733;128734;128735;128736;128737;128738;128739;128740;128741;128742;128743;128744;128745;128746;128747;128748;128749;128750;128751;128752;128753;128754;128755 128743 28 KLEEHGMTQLGENHDITLDVSR Unmodified 2521.2231 0.22310002 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 3 3 3 3 3 3 2 3 25.286 24.21 3;4;5 8.6171E-44 10247 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 241.65 231.67 1113100000 16199000 22971000 13739000 0 0 0 169410000 143710000 173820000 0 0 0 103580000 111240000 104610000 0 0 0 113600000 32370000 107830000 0 0 0 11128 1959 10833 209037;209038;209039;209040;209041;209042;209043;209044;209045;209046;209047;209048;209049;209050;209051;209052;209053;209054;209055;209056;209057;209058;209059;209060;209061;209062;209063;209064;209065;209066 128756;128757;128758;128759;128760;128761;128762;128763;128764;128765;128766;128767;128768;128769 128769 13 KLEFLAADALR Unmodified 1245.7081 0.70812208 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 34.505 33.049 2;3 1.0356E-05 16056 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 106.16 102.93 730220000 138910000 127210000 105580000 0 613980 0 55294000 51713000 53100000 0 0 0 27306000 30135000 20867000 0 0 0 36477000 40922000 42095000 0 0 0 11129 1850 10834 209067;209068;209069;209070;209071;209072;209073;209074;209075;209076;209077;209078;209079;209080;209081;209082;209083;209084;209085;209086;209087;209088;209089;209090;209091 128770;128771;128772;128773;128774;128775;128776;128777;128778;128779;128780;128781;128782;128783;128784;128785;128786;128787;128788 128773 19 KLEGNEK Unmodified 816.43413 0.43413207 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 1 By MS/MS 1 6.3185 7.0658 2 0.034932 1217 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 69.198 24.803 11782000 0 0 11782000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11130 1355 10835 209092 128789 128789 1 KLEHAVPMAK Oxidation (M) 1138.6169 0.61686423 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 1 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.549 11.362 2 0.00071038 2647 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.02 96.502 134690000 7462700 5305100 7800400 0 0 0 23762000 19809000 11962000 0 0 0 12211000 10001000 11983000 0 0 0 12656000 11739000 0 0 0 0 11131 490 10836 209093;209094;209095;209096;209097;209098;209099;209100;209101;209102;209103 128790;128791;128792;128793;128794;128795;128796 128790 290 7 KLEHAVPMAK Unmodified 1122.6219 0.62194961 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 11.403 12.243 2;3 2.3814E-06 3227 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 180.67 157.24 5031600000 401580000 293250000 261240000 2947100 0 0 570150000 547990000 583030000 0 0 0 460480000 376680000 429100000 0 0 0 430890000 334650000 339570000 0 0 0 11132 490 10836 209104;209105;209106;209107;209108;209109;209110;209111;209112;209113;209114;209115;209116;209117;209118;209119;209120;209121;209122;209123;209124;209125;209126;209127;209128 128797;128798;128799;128800;128801;128802;128803;128804;128805;128806;128807;128808;128809;128810;128811;128812;128813;128814;128815;128816;128817;128818;128819 128803 23 KLEHYAQNDPDAYGYSGALCR Unmodified 2427.0914 0.091357563 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 3 3 3 1 2 1 2 2 2 2 2 2 22.377 21.986 2;3;4 5.9384E-22 9425 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 171.07 168.34 1516500000 276430000 250910000 279910000 0 0 0 161810000 179900000 144760000 2781500 3886100 2010100 35571000 35957000 31464000 0 0 0 36862000 39957000 34330000 0 0 0 11133 757 10837 209129;209130;209131;209132;209133;209134;209135;209136;209137;209138;209139;209140;209141;209142;209143;209144;209145;209146;209147;209148;209149;209150;209151;209152;209153;209154;209155;209156;209157;209158;209159;209160;209161;209162 128820;128821;128822;128823;128824;128825;128826;128827;128828;128829;128830;128831 128820 12 KLEMHQGHLVK Unmodified 1318.718 0.71797526 329 P0A7B8 hslV ATP-dependent protease subunit HslV yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 2 1 1 2 1 11.109 11.948 2;3 2.5789E-10 2961 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 192.38 179.34 851930000 72868000 70302000 63493000 0 0 2489300 105200000 85661000 130320000 0 0 0 39690000 63462000 36797000 0 0 0 53337000 75597000 52707000 0 0 0 11134 329 10838 209163;209164;209165;209166;209167;209168;209169;209170;209171;209172;209173;209174;209175;209176;209177;209178;209179;209180 128832;128833;128834;128835;128836;128837;128838;128839;128840;128841;128842;128843;128844;128845;128846;128847;128848 128834 17 KLESLDAEQSFIR Unmodified 1534.7991 0.79912193 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 29.044 27.886 2 2.5998E-17 12932 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 210.35 172.05 71761000 11344000 10898000 11682000 0 0 0 4995300 4382000 4696300 0 0 0 2999300 3447600 3093700 0 0 1146900 4306400 2744800 6026000 0 0 0 11135 1728 10839 209181;209182;209183;209184;209185;209186;209187;209188;209189;209190;209191;209192;209193 128849;128850;128851 128849 3 KLFDDAGLILVDFK Unmodified 1592.8814 0.881395 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.137 50.89 3 9.9895E-06 24704 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.854 91.611 394510000 84163000 89928000 80432000 0 0 0 14566000 17311000 19355000 0 0 0 10115000 10303000 11126000 0 0 0 20566000 18322000 18328000 0 0 0 11136 334 10840 209194;209195;209196;209197;209198;209199;209200;209201;209202;209203;209204;209205 128852;128853;128854;128855;128856;128857;128858;128859;128860;128861;128862 128860 11 KLFFNLRK Unmodified 1064.6495 0.64948499 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 2 By matching By matching By MS/MS 1 1 1 19.038 19.026 3 0.088734 5431 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 41.84 40.196 19726000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6291100 7225000 6209600 0 0 0 0 0 0 11137 1004 10841 209206;209207;209208 128863 128863 1 KLFTLNTGHAITAYLGK Unmodified 1847.0305 0.030518853 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 2 2 2 1 2 34.633 33.174 3;4 7.9659E-09 16331 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 115.73 115.73 304460000 24338000 23686000 21973000 0 0 0 44996000 41475000 37533000 0 0 0 17450000 23099000 16229000 0 0 0 22645000 11343000 19695000 0 0 0 11138 214 10842 209209;209210;209211;209212;209213;209214;209215;209216;209217;209218;209219;209220;209221;209222;209223;209224;209225;209226;209227;209228;209229;209230 128864;128865;128866;128867;128868;128869;128870;128871;128872;128873 128864 8 KLGAAGVVVAGSGVQAIFGTK Unmodified 1929.1047 0.10474643 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 2 40.114 38.394 2;3 5.8822E-16 19207 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 188.58 180.85 696580000 17802000 17174000 14679000 8497600 11883000 9927900 56864000 57140000 65214000 39781000 37973000 31923000 42029000 37023000 37656000 8158600 7559900 9898900 41669000 50102000 46821000 15561000 7705400 23534000 11139 1742 10843 209231;209232;209233;209234;209235;209236;209237;209238;209239;209240;209241;209242;209243;209244;209245;209246;209247;209248;209249;209250;209251;209252;209253;209254;209255;209256;209257;209258;209259;209260;209261;209262;209263;209264;209265;209266 128874;128875;128876;128877;128878;128879;128880;128881;128882;128883;128884;128885 128882 12 KLGIGMVEIK Unmodified 1086.6471 0.64710173 1536 P39401 mdoB Phosphoglycerol transferase I yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.599 27.234 3 0.0010029 13023 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.278 55.92 69830000 4205400 3773400 3298900 0 0 0 6567000 8613100 5638800 0 753490 0 4301600 5364900 2969000 0 0 0 8664900 6910000 6561400 1051200 0 1156500 11140 1536 10844 209267;209268;209269;209270;209271;209272;209273;209274;209275;209276;209277;209278;209279;209280;209281 128886;128887;128888 128886 3 KLGLQEK Unmodified 814.49125 0.49125301 1236 P24182 accC Biotin carboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 11.041 11.81 2 0.00043198 2798 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 124.83 73.869 667380000 39872000 27675000 26355000 2575800 0 0 0 63251000 0 0 0 0 76003000 86650000 0 0 0 0 111120000 112800000 116340000 0 0 4741000 11141 1236 10845 209282;209283;209284;209285;209286;209287;209288;209289;209290;209291;209292;209293;209294;209295;209296;209297 128889;128890;128891;128892;128893;128894;128895;128896;128897;128898 128898 10 KLGLTNTTFQTVHGLDAPGQFSTAR Unmodified 2659.3718 0.37181317 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 1 1 1 1 2 2 2 2 2 2 1 2 1 1 2 2 2 1 1 1 34.723 33.097 3;4 1.503E-10 12990 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 127.3 113.06 379810000 13739000 15803000 0 3621900 2566300 3475600 10502000 29797000 39827000 46097000 43783000 35404000 21499000 8051900 17246000 6360300 0 7174800 20592000 17711000 19296000 9667700 3032200 4562300 11142 189 10846 209298;209299;209300;209301;209302;209303;209304;209305;209306;209307;209308;209309;209310;209311;209312;209313;209314;209315;209316;209317;209318;209319;209320;209321;209322;209323;209324;209325;209326;209327;209328;209329;209330;209331 128899;128900;128901;128902;128903;128904;128905;128906;128907 128901 9 KLGMKPGEAIEHPWVTK Unmodified 1920.0291 0.029138644 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 2 2 3 3 2 2 1 2 1 1 2 2 2 2 2 2 20.847 20.946 2;3;4 5.1153E-09 7168 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 125.73 109.61 729040000 6545100 5649300 23778000 5577400 9123000 5411300 15770000 22352000 24079000 59191000 65936000 51345000 22987000 25682000 14976000 52416000 35145000 70104000 42032000 33606000 31468000 40622000 33677000 31569000 11143 1057 10847 209332;209333;209334;209335;209336;209337;209338;209339;209340;209341;209342;209343;209344;209345;209346;209347;209348;209349;209350;209351;209352;209353;209354;209355;209356;209357;209358;209359;209360;209361;209362;209363;209364;209365;209366;209367;209368;209369;209370;209371 128908;128909;128910;128911;128912;128913;128914;128915;128916;128917;128918;128919;128920;128921;128922;128923;128924;128925;128926;128927;128928;128929;128930 128912 23 KLGMSMDNVVVTLDR Unmodified 1676.859 0.85896177 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 2 2 1 2 2 2 2 2 2 37.472 35.78 2;3 1.5908E-15 17333 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 228.93 219.24 518380000 44272000 43605000 38940000 0 0 0 24007000 39385000 43996000 0 5400000 0 50815000 52327000 42929000 0 0 0 60171000 19605000 52928000 0 0 0 11144 273 10848 209372;209373;209374;209375;209376;209377;209378;209379;209380;209381;209382;209383;209384;209385;209386;209387;209388;209389;209390;209391;209392;209393;209394;209395 128931;128932;128933;128934;128935;128936;128937 128934 7 KLGNTRPCTTADLALPGSQEPAEVTLR Unmodified 2894.492 0.49200466 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 1 1 31.237 29.734 3;4 2.6603E-07 14121 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.446 93.138 291860000 0 0 0 0 0 0 49862000 38842000 53255000 0 4079800 0 29754000 28995000 31715000 0 0 0 13740000 17754000 20633000 0 1788300 1440500 11145 506 10849 209396;209397;209398;209399;209400;209401;209402;209403;209404;209405;209406;209407;209408;209409;209410;209411;209412;209413;209414;209415;209416 128938;128939;128940;128941 128939 4 KLGPVYSVR Unmodified 1017.5971 0.59711507 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.379 16.231 2 0.00018379 5647 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.22 113.24 96623000 22423000 20398000 20336000 358730 287310 345210 0 0 0 0 0 0 0 0 0 0 0 0 0 32475000 0 0 0 0 11146 803 10850 209417;209418;209419;209420;209421;209422;209423;209424;209425;209426;209427;209428;209429;209430 128942;128943;128944;128945;128946;128947;128948;128949;128950;128951;128952 128947 11 KLGVDIDNLLCSQPDTGEQALEICDALAR Unmodified 3213.5646 0.56457725 343 P0A7G6 recA Protein RecA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 53.094 51.854 3;4 2.1033E-31 20805 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 191.59 186.16 3678100000 158950000 158030000 170080000 45882000 52377000 54954000 129280000 134940000 136580000 358110000 334190000 328470000 130170000 125200000 135840000 114010000 125000000 130330000 179150000 176670000 180250000 105930000 123670000 90050000 11147 343 10851 209431;209432;209433;209434;209435;209436;209437;209438;209439;209440;209441;209442;209443;209444;209445;209446;209447;209448;209449;209450;209451;209452;209453;209454;209455;209456;209457;209458;209459;209460;209461;209462;209463;209464;209465;209466;209467;209468;209469;209470;209471;209472;209473;209474;209475;209476;209477;209478 128953;128954;128955;128956;128957;128958;128959;128960;128961;128962;128963;128964;128965;128966;128967;128968;128969;128970;128971;128972;128973;128974;128975;128976;128977 128957 25 KLGYSGNTTDPK Unmodified 1279.6408 0.64083038 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 1 2 2 2 2 2 2 11.535 12.321 2;3 4.3583E-06 3049 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 135.1 120.6 338150000 26070000 17387000 21151000 0 0 0 18777000 8135300 23849000 0 570860 1250000 38257000 47490000 46643000 0 0 0 29412000 31864000 27290000 0 0 0 11148 951 10852 209479;209480;209481;209482;209483;209484;209485;209486;209487;209488;209489;209490;209491;209492;209493;209494;209495;209496;209497;209498;209499;209500;209501;209502;209503 128978;128979;128980;128981;128982;128983;128984;128985;128986;128987;128988;128989;128990;128991;128992;128993 128993 16 KLHELADYEVIQLNDTHPTIAIPELLR Unmodified 3140.687 0.68699929 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 3 3 3 4 3 3 3 3 3 2 2 2 3 3 3 3 3 2 48.512 47.211 3;4;5 5.4901E-41 23385 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 206.4 205.79 1408200000 28550000 28153000 31824000 2039400 0 0 144380000 138420000 122620000 53304000 45009000 39568000 58503000 58552000 74272000 56516000 62337000 92563000 102800000 102830000 97549000 26758000 22914000 18713000 11149 30 10853 209504;209505;209506;209507;209508;209509;209510;209511;209512;209513;209514;209515;209516;209517;209518;209519;209520;209521;209522;209523;209524;209525;209526;209527;209528;209529;209530;209531;209532;209533;209534;209535;209536;209537;209538;209539;209540;209541;209542;209543;209544;209545;209546;209547;209548;209549;209550;209551;209552;209553;209554;209555;209556;209557;209558;209559;209560;209561;209562;209563 128994;128995;128996;128997;128998;128999;129000;129001;129002;129003;129004;129005;129006;129007;129008;129009;129010;129011;129012;129013;129014;129015;129016;129017;129018;129019;129020;129021;129022;129023;129024;129025 129009 32 KLHVCGNNPTCDGYEIEEGEFR Unmodified 2623.1431 0.14313514 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.093 24.92 3 8.8225E-11 11234 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.09 127.93 164640000 12757000 13564000 9239100 0 0 0 12740000 14393000 13522000 0 0 0 15573000 13342000 11736000 0 0 0 16264000 13632000 17875000 0 0 0 11150 124 10854 209564;209565;209566;209567;209568;209569;209570;209571;209572;209573;209574;209575 129026;129027;129028 129026 3 KLHYALVDEVDSILIDEAR Unmodified 2198.1583 0.15829814 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 1 1 49.835 48.427 2;3;4 1.1888E-22 19332 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 148.44 146.11 630670000 43983000 17992000 19155000 12684000 12051000 10568000 33921000 31781000 28626000 57710000 52180000 47382000 48939000 39859000 31334000 0 0 0 32552000 31514000 27928000 24163000 0 26347000 11151 1057 10855 209576;209577;209578;209579;209580;209581;209582;209583;209584;209585;209586;209587;209588;209589;209590;209591;209592;209593;209594;209595;209596;209597;209598;209599;209600;209601;209602;209603;209604;209605;209606 129029;129030;129031;129032;129033;129034;129035;129036;129037;129038;129039;129040;129041;129042 129031 14 KLIAAENPAKPLSDSK Unmodified 1680.941 0.94103514 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 3 4 5 1 1 15.313 15.622 2;3;4 6.0419E-18 4233 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 226.19 220.37 321090000 5744000 10210000 7093200 0 0 0 4421900 0 4726100 0 0 0 0 4308000 0 97029000 80826000 95761000 6023300 4951700 0 0 0 0 11152 1249 10856 209607;209608;209609;209610;209611;209612;209613;209614;209615;209616;209617;209618;209619;209620;209621;209622;209623;209624;209625;209626;209627 129043;129044;129045;129046;129047;129048;129049 129044 7 KLIDATFADR Unmodified 1148.619 0.61897272 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 22.36 21.994 2 0.0003045 9194 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 117.31 83.223 411810000 138720000 139440000 133650000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11153 1919 10857 209628;209629;209630 129050;129051;129052 129052 3 KLIDDAVAWAK Unmodified 1228.6816 0.68157298 402 P0A870 talB Transaldolase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 2 2 2 31.622 30.297 2;3 4.0524E-05 14115 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.472 88.517 6967500000 490340000 469090000 459710000 1263600 1289400 930500 714280000 688510000 664400000 0 0 0 506500000 517740000 544120000 897250 0 0 662970000 647230000 598180000 0 0 0 11154 402 10858 209631;209632;209633;209634;209635;209636;209637;209638;209639;209640;209641;209642;209643;209644;209645;209646;209647;209648;209649;209650;209651;209652;209653;209654;209655;209656;209657;209658 129053;129054;129055;129056;129057;129058;129059;129060;129061;129062;129063;129064;129065;129066;129067;129068;129069;129070;129071;129072;129073;129074;129075;129076 129063 24 KLIELVEESGISELEISEGEESVR Unmodified 2673.3596 0.3596363 652 P0ABD8 accB Biotin carboxyl carrier protein of acetyl-CoA carboxylase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.414 48.033 3 3.8892E-15 22508 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.07 136.87 299160000 16585000 15684000 14244000 0 0 0 17740000 24048000 16012000 0 1808500 0 31774000 29241000 32264000 0 0 0 35469000 36196000 24171000 0 2449800 1472300 11155 652 10859 209659;209660;209661;209662;209663;209664;209665;209666;209667;209668;209669;209670;209671;209672;209673 129077;129078;129079;129080;129081;129082;129083;129084 129083 8 KLIPPSQTFPR Unmodified 1282.7398 0.73975656 401 P0A867 talA Transaldolase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 3 3 1 1 2 2 2 21.455 21.635 2;3 9.1862E-08 8772 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.08 136.57 193250000 39955000 46461000 26175000 0 0 0 22301000 16585000 13065000 0 0 0 0 2968700 0 0 0 0 11120000 8099400 6516300 0 0 0 11156 401 10860 209674;209675;209676;209677;209678;209679;209680;209681;209682;209683;209684;209685;209686;209687;209688;209689;209690;209691;209692;209693;209694;209695 129085;129086;129087;129088;129089;129090;129091;129092;129093;129094;129095;129096;129097;129098;129099;129100;129101;129102;129103;129104 129103 17 KLLAEAGYTADKPLTINLLYNTSDLHK Unmodified 3001.6124 0.61243737 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 2 3 3 2 2 2 2 39.584 37.935 3;4;5 2.9989E-96 18502 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 316.78 312.16 6604100000 2128300000 1715600000 1672100000 9031000 5592100 5026500 175750000 153460000 122370000 0 0 0 90517000 79952000 91013000 0 0 0 142980000 106580000 105780000 0 0 0 11157 1217 10861 209696;209697;209698;209699;209700;209701;209702;209703;209704;209705;209706;209707;209708;209709;209710;209711;209712;209713;209714;209715;209716;209717;209718;209719;209720;209721;209722;209723;209724;209725;209726;209727;209728;209729;209730 129105;129106;129107;129108;129109;129110;129111;129112;129113;129114;129115;129116;129117;129118;129119;129120;129121;129122;129123;129124;129125 129115 21 KLLAEMK Unmodified 831.48881 0.48881017 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.393 14.032 2 0.036442 3978 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 67.981 64.369 230790000 0 6685800 0 2525600 2217100 3567000 16227000 16122000 16706000 9401300 9491300 8898800 16441000 26317000 16210000 4599600 0 0 20975000 19032000 15306000 8879700 4813400 6373000 11158 644 10862 209731;209732;209733;209734;209735;209736;209737;209738;209739;209740;209741;209742;209743;209744;209745;209746;209747;209748;209749;209750 129126 129126 1 KLLALHMYDCAR Unmodified 1489.7534 0.75337449 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 22.618 22.018 3 0.00068306 9598 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.073 68.393 111600000 11190000 12154000 10185000 0 0 0 23783000 29795000 19255000 0 0 0 0 0 1429800 0 0 0 3805200 0 0 0 0 0 11159 1191 10863 209751;209752;209753;209754;209755;209756;209757;209758 129127;129128;129129 129129 3 KLLDEGR Unmodified 829.46577 0.46576654 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.672 12.387 2 1.4063E-05 3229 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 183.89 25.905 24323000000 1829600000 1517700000 1457600000 22615000 0 27748000 2485400000 2021300000 2363500000 917440 0 0 1896900000 1856000000 1752100000 7363400 6007600 0 2478600000 2351200000 2248100000 0 0 0 11160 1048 10864 209759;209760;209761;209762;209763;209764;209765;209766;209767;209768;209769;209770;209771;209772;209773;209774;209775;209776 129130;129131;129132;129133;129134;129135;129136;129137;129138;129139;129140;129141;129142 129132 13 KLLDNAAADLAAISGQKPLITK Unmodified 2250.2947 0.29473204 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.892 40.345 3 0.07091 15897 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 36.166 35.511 70813000 7791900 6907900 6967900 2577600 2065300 3549200 0 0 0 4780900 0 0 2475800 0 2239700 4251600 0 9409300 0 0 6718400 3946700 4042000 3089200 11161 1644 10865 209777;209778;209779;209780;209781;209782;209783;209784;209785;209786;209787;209788;209789;209790;209791 129143 129143 1 KLLDYLK Unmodified 891.54295 0.54295423 823 P0ADZ4 rpsO 30S ribosomal protein S15 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.68 25.524 2 0.0025683 8351 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 119.17 68.208 480710000 0 0 0 3044000 2517800 2605300 0 0 0 10489000 13882000 13041000 0 0 0 175840000 109000000 126730000 0 0 0 8193100 7282700 8095300 11162 823 10866 209792;209793;209794;209795;209796;209797;209798;209799;209800;209801;209802;209803 129144;129145;129146;129147;129148 129144 5 KLLDYLKR Unmodified 1047.6441 0.64406526 823 P0ADZ4 rpsO 30S ribosomal protein S15 yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 1 2 1 1 1 21.468 21.264 2;3 0.00063835 6113 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 103.56 77.669 114880000 0 0 0 759740 1014000 0 0 0 0 3769900 3097200 1801800 0 0 0 32248000 39614000 28926000 0 0 0 1251300 1102400 1299500 11163 823 10867 209804;209805;209806;209807;209808;209809;209810;209811;209812;209813;209814;209815;209816 129149;129150;129151;129152;129153 129151 5 KLLEGEECR Unmodified 1132.5547 0.55465791 17;14;8;21 CON__P35908;CON__Q6NXH9;CON__P48668;CON__P02538;CON__P04259;CON__P13647;CON__Q7RTS7;CON__Q32MB2 no no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 2 2 2 12.149 12.564 2;3 0.0077979 2814 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 71.692 68.324 42020000 0 0 0 3386900 2829100 1992000 0 0 0 4249200 3767500 4492100 0 0 0 1693300 2528000 1624600 0 0 0 5541800 4988100 4927300 + 11164 17;8;14;21 10868 209817;209818;209819;209820;209821;209822;209823;209824;209825;209826;209827;209828;209829;209830;209831;209832;209833;209834;209835;209836;209837;209838 129154;129155;129156;129157;129158;129159 129158 5 KLLEGELK Unmodified 928.55933 0.55933258 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 14.932 15.62 2 0.0013696 5238 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.74 59.471 133770000 31543000 30370000 41009000 0 0 0 7323200 9122600 11601000 0 0 0 0 0 0 0 0 0 2803900 0 0 0 0 0 11165 1486 10869 209839;209840;209841;209842;209843;209844;209845 129160;129161;129162 129162 3 KLLEQEMVNFLFEGK Unmodified 1823.9492 0.94915699 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 1 2 2 2 1 51.588 50.37 2;3 6.2704E-15 24625 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 231.69 215.8 970550000 114340000 112150000 109130000 1129500 0 718640 70733000 88431000 68523000 0 2269900 0 67272000 48405000 54264000 0 0 1729300 84719000 72598000 73430000 715910 0 0 11166 451 10870 209846;209847;209848;209849;209850;209851;209852;209853;209854;209855;209856;209857;209858;209859;209860;209861;209862;209863;209864;209865;209866;209867;209868;209869;209870;209871;209872;209873;209874 129163;129164;129165;129166;129167;129168;129169;129170;129171;129172;129173;129174;129175;129176;129177;129178 129173 16 KLLPWIDGLLDAGEK Unmodified 1666.9294 0.92940782 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 1 1 1 3 3 3 1 3 3 3 53.151 51.76 2;3 7.7165E-09 24222 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 188.96 182.73 11984000000 774080000 836190000 647310000 0 0 0 1355800000 1175200000 1307700000 3853600 2345600 3161100 1018200000 893830000 881050000 0 0 10645000 938010000 1004600000 1132500000 0 0 0 11167 634 10871 209875;209876;209877;209878;209879;209880;209881;209882;209883;209884;209885;209886;209887;209888;209889;209890;209891;209892;209893;209894;209895;209896;209897;209898;209899;209900;209901;209902;209903;209904;209905;209906;209907;209908;209909;209910;209911;209912;209913;209914 129179;129180;129181;129182;129183;129184;129185;129186;129187;129188;129189;129190;129191;129192;129193;129194;129195;129196;129197;129198;129199;129200;129201;129202;129203;129204 129200 26 KLLSPEVANDK Unmodified 1212.6714 0.67140222 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 14.542 15.304 2 0.00036455 5032 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.06 95.565 100720000 26609000 27315000 25102000 0 0 0 0 0 0 0 0 0 0 21690000 0 0 0 0 0 0 0 0 0 0 11168 951 10872 209915;209916;209917;209918 129205;129206;129207;129208 129207 4 KLLTGDSPFAANALGK Unmodified 1601.8777 0.8777066 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 31.36 30.008 2;3 2.036E-30 14097 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 227.42 193.46 1208000000 320150000 267190000 263090000 0 0 0 94750000 93342000 90112000 0 0 0 9996800 12103000 8228300 0 0 0 15737000 15407000 17884000 0 0 0 11169 1373 10873 209919;209920;209921;209922;209923;209924;209925;209926;209927;209928;209929;209930;209931;209932;209933;209934;209935;209936;209937;209938;209939;209940;209941 129209;129210;129211;129212;129213;129214;129215;129216;129217;129218 129213 10 KLLTWGFR Unmodified 1019.5916 0.59163576 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 32.06 30.037 2 0.0024628 12000 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 104.45 104.45 27738000 0 0 0 1806100 0 0 0 0 0 4259300 3249600 5533500 0 0 0 0 0 0 0 0 0 4276500 3656900 4955900 11170 844 10874 209942;209943;209944;209945;209946;209947;209948 129219;129220;129221 129219 3 KLMDDTIAQVQTSGEAEK Unmodified 1962.9568 0.95682114 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 1 1 1 1 1 2 24.73 23.752 2;3 5.0742E-37 10530 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 305.14 261.63 225650000 53032000 55346000 54577000 0 0 0 5276000 5485600 8481700 0 0 0 5640000 3665700 5035100 0 0 0 8193600 10466000 10455000 0 0 0 11171 1501 10875 209949;209950;209951;209952;209953;209954;209955;209956;209957;209958;209959;209960;209961;209962;209963;209964;209965 129222;129223;129224;129225 129222 4 KLMDSIAK Unmodified 904.50519 0.50518852 824 P0ADZ7 yajC UPF0092 membrane protein YajC yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.175 14.685 2 0.0021277 4004 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 106.68 52.072 348040000 21923000 0 21983000 6344200 5415800 4810500 47443000 44562000 37427000 19942000 18098000 18686000 0 0 0 0 21158000 22766000 39967000 0 0 5494300 6515400 5506400 11172 824 10876 209966;209967;209968;209969;209970;209971;209972;209973;209974;209975;209976;209977;209978;209979;209980;209981;209982 129226;129227;129228;129229;129230;129231;129232;129233 129226 8 KLMDSIAKGDEVLTNGGLVGR Unmodified 2172.1573 0.15725228 824 P0ADZ7 yajC UPF0092 membrane protein YajC yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 1 1 1 1 1 1 1 1 1 35.552 33.871 3;4 0.00059529 11814 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 64.705 61.466 61098000 0 0 0 9308200 8772300 3306100 0 0 0 6090100 7595700 8106500 0 0 0 2512000 1211600 0 0 0 0 5467800 4178200 4549400 11173 824 10877 209983;209984;209985;209986;209987;209988;209989;209990;209991;209992;209993;209994;209995 129234;129235;129236;129237 129235 4 KLMTEFNYNSVMQVPR Unmodified 1955.9597 0.95973845 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 2 1 2 2 2 1 2 2 3 2 2 2 38.164 36.386 2;3 3.4558E-39 17677 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 259.48 255.62 587280000 73222000 61952000 55825000 8046900 8732200 6874500 17132000 14342000 13219000 18824000 20544000 15001000 28645000 27328000 25165000 4733800 0 0 48196000 48803000 40419000 17753000 15846000 16677000 11174 1644 10878 209996;209997;209998;209999;210000;210001;210002;210003;210004;210005;210006;210007;210008;210009;210010;210011;210012;210013;210014;210015;210016;210017;210018;210019;210020;210021;210022;210023;210024;210025;210026;210027;210028;210029;210030;210031;210032;210033;210034;210035 129238;129239;129240;129241;129242;129243;129244;129245;129246;129247;129248;129249;129250;129251;129252;129253;129254;129255;129256 129250 19 KLNAEIIKPVFLDEK Unmodified 1756.0135 0.013471805 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1 2 2 2 1 1 2 2 2 32.739 31.412 3;4 3.838E-06 14803 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 96.673 95.968 323180000 48132000 15985000 11559000 0 0 0 15059000 11276000 11754000 0 0 0 30434000 27003000 29465000 9412600 0 0 44539000 30914000 37648000 0 0 0 11175 433 10879 210036;210037;210038;210039;210040;210041;210042;210043;210044;210045;210046;210047;210048;210049;210050;210051;210052;210053;210054;210055;210056 129257;129258;129259;129260;129261 129260 4 KLNGDVAATER Unmodified 1172.6149 0.61494998 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 11.468 12.032 2 0.01319 2549 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 63.184 54.652 27625000 0 0 0 0 0 0 0 0 0 0 4549900 0 0 0 0 0 0 0 4526100 2714700 3131000 0 7358300 5345000 11176 1435 10880 210057;210058;210059;210060;210061;210062 129262 129262 1 KLNIKPGQTTFDGR Unmodified 1573.8576 0.85763986 928 P0AFD1 nuoE NADH-quinone oxidoreductase subunit E yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 3 3 3 3 2 2 2 1 1 3 3 2 2 2 3 15.829 16.404 2;3 6.1956E-11 4603 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 145.81 140.93 2003900000 84535000 95231000 68646000 35617000 31557000 26044000 124330000 138590000 112260000 36388000 54416000 56461000 130750000 104390000 108270000 20551000 19101000 17167000 192200000 196430000 167470000 64093000 56140000 63248000 11177 928 10881 210063;210064;210065;210066;210067;210068;210069;210070;210071;210072;210073;210074;210075;210076;210077;210078;210079;210080;210081;210082;210083;210084;210085;210086;210087;210088;210089;210090;210091;210092;210093;210094;210095;210096;210097;210098;210099;210100;210101;210102;210103;210104;210105;210106;210107;210108;210109;210110;210111;210112;210113;210114;210115;210116;210117;210118 129263;129264;129265;129266;129267;129268;129269;129270;129271;129272;129273;129274;129275;129276;129277;129278;129279;129280;129281;129282;129283;129284;129285;129286;129287;129288;129289;129290;129291;129292;129293;129294;129295 129277 33 KLNKPDLQVK Unmodified 1181.7132 0.71320746 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 12.13 12.962 2;3 3.9451E-08 3731 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.67 158.75 1158200000 263360000 275710000 243240000 0 0 0 51375000 48947000 50710000 0 0 0 31619000 30442000 31033000 0 0 0 48093000 41388000 42297000 0 0 0 11178 1501 10882 210119;210120;210121;210122;210123;210124;210125;210126;210127;210128;210129;210130;210131;210132;210133;210134;210135;210136;210137;210138;210139;210140;210141;210142 129296;129297;129298;129299;129300 129296 5 KLNLIPSMASIQTTLVNNEVSKPLFDMAK Unmodified 3201.7141 0.71414202 1944 P77804 ydgA Protein YdgA yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 52.582 51.375 3;4 5.2236E-23 20607 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 171.14 169.06 960370000 14542000 27309000 17503000 12848000 10697000 12070000 75589000 63564000 71100000 113260000 88597000 107550000 52691000 41181000 43252000 7493200 11583000 11894000 53533000 38158000 53717000 6587200 9530000 16113000 11179 1944 10883 210143;210144;210145;210146;210147;210148;210149;210150;210151;210152;210153;210154;210155;210156;210157;210158;210159;210160;210161;210162;210163;210164;210165;210166;210167;210168;210169;210170;210171;210172;210173;210174;210175;210176;210177;210178;210179;210180;210181;210182 129301;129302;129303;129304;129305;129306;129307;129308;129309;129310;129311;129312;129313;129314 129307 14 KLNLLVTDK Unmodified 1042.6386 0.63864553 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.913 21.244 2 1.7961E-05 8829 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 160.82 118.71 1054200000 63665000 56727000 61095000 0 0 0 108280000 94803000 130670000 0 0 0 89479000 78487000 65707000 0 0 0 120650000 118760000 65853000 0 0 0 11180 63 10884 210183;210184;210185;210186;210187;210188;210189;210190;210191;210192;210193;210194 129315;129316;129317;129318;129319;129320 129315 6 KLNMMNAEHR Unmodified 1242.5961 0.59614557 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.455 12.312 2 1.6809E-06 3285 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 165.98 158.6 336100000 46399000 35645000 29873000 0 561050 0 27302000 23182000 20500000 0 0 0 21162000 25632000 16785000 0 0 0 33084000 28258000 27722000 0 0 0 11181 451 10885 210195;210196;210197;210198;210199;210200;210201;210202;210203;210204;210205;210206;210207 129321;129322;129323 129323 3 KLNNQGHSIGIALGACTVPAAGK Unmodified 2276.2059 0.20593381 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 2 2 2 1 1 2 1 1 24.254 23.243 3;4 0.0027916 10603 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 55.844 53.258 140490000 0 3859700 0 0 0 0 35535000 27380000 23230000 0 0 0 11875000 8370900 15854000 0 0 0 6390100 7992600 0 0 0 0 11182 1806 10886 210208;210209;210210;210211;210212;210213;210214;210215;210216;210217;210218;210219;210220 129324;129325 129324 2 KLNSAVFPGGQGGPLMHVIAGK Unmodified 2177.1779 0.17792815 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 2 2 3 3 3 2 1 3 3 3 3 3 3 1 1 36.578 34.911 2;3;4 7.0238E-29 16647 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 202.01 196.94 4671200000 783180000 758780000 722850000 3072000 3310900 3628100 270470000 241440000 269240000 1548400 995800 0 228060000 221820000 216280000 0 0 0 343380000 320630000 281120000 747140 688290 0 11183 391 10887 210221;210222;210223;210224;210225;210226;210227;210228;210229;210230;210231;210232;210233;210234;210235;210236;210237;210238;210239;210240;210241;210242;210243;210244;210245;210246;210247;210248;210249;210250;210251;210252;210253;210254;210255;210256;210257;210258;210259;210260;210261;210262;210263;210264;210265;210266;210267 129326;129327;129328;129329;129330;129331;129332;129333;129334;129335;129336;129337;129338;129339;129340;129341;129342;129343;129344;129345;129346;129347;129348;129349;129350;129351;129352;129353 129344 28 KLNTEETVQEWVDK Unmodified 1717.8523 0.85227972 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 29.396 28.126 2;3 5.2842E-69 12926 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 390.68 370.47 2047100000 192360000 179920000 149330000 0 452680 754410 177290000 163370000 173490000 0 0 0 151820000 157560000 137140000 0 0 0 187750000 187100000 188750000 0 0 0 11184 1024 10888 210268;210269;210270;210271;210272;210273;210274;210275;210276;210277;210278;210279;210280;210281;210282;210283;210284;210285;210286;210287;210288;210289;210290;210291;210292;210293 129354;129355;129356;129357;129358;129359;129360;129361;129362;129363;129364;129365;129366;129367;129368;129369;129370;129371;129372;129373;129374;129375;129376;129377 129369 24 KLPAPLIGELPYLPR Unmodified 1676.0025 0.002513188 237 P0A6E9 bioD2 ATP-dependent dethiobiotin synthetase BioD 2 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.996 46.472 3 2.8517E-06 22975 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 101.2 101.2 630440000 17308000 18935000 18327000 0 0 0 105630000 90784000 83978000 2059300 4563500 3544500 57316000 63879000 52620000 0 0 0 36657000 38591000 33786000 2466800 0 0 11185 237 10889 210294;210295;210296;210297;210298;210299;210300;210301;210302;210303;210304;210305;210306;210307;210308;210309 129378;129379;129380;129381;129382;129383;129384;129385;129386;129387;129388 129382 10 KLPATIILR Unmodified 1023.6805 0.68045077 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 4 4 3 1 1 1 3 3 2 26.464 25.418 2 0.00026154 8633 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 125.81 100.36 30600000000 293930000 311840000 270130000 15566000 15856000 15227000 236280000 222250000 207990000 1676700000 1747600000 1571300000 240260000 226400000 194740000 6418500000 5314200000 5167900000 283680000 291090000 317560000 1886000000 1842200000 1832400000 11186 463 10890 210310;210311;210312;210313;210314;210315;210316;210317;210318;210319;210320;210321;210322;210323;210324;210325;210326;210327;210328;210329;210330;210331;210332;210333;210334;210335;210336;210337;210338;210339;210340;210341;210342;210343;210344;210345;210346;210347;210348;210349 129389;129390;129391;129392;129393;129394;129395;129396;129397;129398;129399;129400;129401;129402;129403;129404;129405;129406;129407;129408;129409;129410;129411;129412;129413;129414;129415;129416;129417;129418;129419;129420;129421;129422;129423;129424;129425;129426;129427;129428 129416 40 KLPEDTPVTAQTSIGDNGEIVESTVR Unmodified 2755.3876 0.38758239 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.31 32.867 3 1.6213E-22 15638 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 171.05 171.05 569270000 55782000 58234000 40486000 0 0 0 40749000 36579000 38648000 14936000 15892000 14997000 29030000 36027000 24399000 4903800 3564000 2632000 42626000 33438000 39146000 13749000 14490000 8966000 11187 1408 10891 210350;210351;210352;210353;210354;210355;210356;210357;210358;210359;210360;210361;210362;210363;210364;210365;210366;210367;210368;210369;210370 129429;129430;129431;129432;129433;129434;129435;129436;129437;129438;129439;129440;129441;129442;129443;129444;129445;129446;129447;129448;129449 129442 21 KLPEGVK Unmodified 769.46979 0.46978929 857 P0AEG4 dsbA Thiol:disulfide interchange protein DsbA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.02 11.836 2 0.0027107 3013 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.16 85.857 2131300000 180280000 174540000 156770000 0 0 0 184610000 152260000 172880000 0 0 0 171240000 132470000 127820000 0 0 0 254470000 220360000 203620000 0 0 0 11188 857 10892 210371;210372;210373;210374;210375;210376;210377;210378;210379;210380;210381;210382 129450;129451;129452;129453;129454;129455;129456;129457;129458;129459;129460;129461 129456 12 KLPEIPVACR Unmodified 1181.6591 0.6590634 1083 P13009 metH Methionine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 2 2 1 1 1 1 1 2 1 1 23.836 22.929 2;3 0.0054511 9766 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.165 76.594 86285000 16026000 23960000 23037000 1872800 0 1188000 0 0 2949300 2709900 2783600 6489000 0 0 3910100 0 0 0 0 0 0 0 1359300 0 11189 1083 10893 210383;210384;210385;210386;210387;210388;210389;210390;210391;210392;210393;210394;210395;210396 129462;129463;129464;129465;129466;129467;129468 129465 7 KLPHFDAVIPR Unmodified 1291.7401 0.74009091 1043 P0C0U4 rimK Ribosomal protein S6--L-glutamate ligase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS 1 1 1 1 26.704 25.431 3 0.003359 9014 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 59.418 58.728 22288000 0 0 0 0 0 0 0 0 0 0 0 0 1744600 0 0 0 0 0 0 0 0 6458000 6401100 7683800 11190 1043 10894 210397;210398;210399;210400 129469;129470 129470 2 KLPKPYVMLFDLHGMDER Unmodified 2188.1173 0.11730172 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 39.567 37.88 3;4 4.833E-05 12528 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 79.805 79.018 255190000 0 0 0 10753000 9375900 11014000 3172000 0 7275600 26472000 25143000 34147000 4827300 2417100 2809600 11236000 9716800 11646000 6668200 7352000 7435200 20604000 20567000 22561000 11191 1426 10895 210401;210402;210403;210404;210405;210406;210407;210408;210409;210410;210411;210412;210413;210414;210415;210416;210417;210418;210419;210420;210421;210422;210423;210424;210425;210426 129471;129472;129473;129474;129475;129476;129477;129478;129479;129480;129481;129482;129483;129484;129485;129486 129472 16 KLQELGATR Unmodified 1014.5822 0.58219329 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.129 12.701 2 0.001942 2813 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 88.294 43.602 967770000 139100000 148640000 143260000 7524000 10687000 7709600 0 0 0 11955000 9131200 11164000 80051000 0 64490000 10147000 5141800 6031600 100240000 96374000 82447000 10557000 12485000 10638000 11192 1031 10896 210427;210428;210429;210430;210431;210432;210433;210434;210435;210436;210437;210438;210439;210440;210441;210442;210443;210444;210445;210446 129487;129488;129489;129490;129491;129492;129493;129494;129495;129496;129497;129498 129488 12 KLQHQNLLYPDK Unmodified 1495.8147 0.81471242 117 P05719 hsdS Type-1 restriction enzyme EcoKI specificity protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.286 25.948 3 0.16344 12184 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 17.211 9.1072 745500000 58778000 61868000 56099000 1052000 0 0 88166000 74307000 95941000 2258200 2397400 2094600 46143000 43224000 43531000 0 0 0 63115000 49934000 56592000 0 0 0 11193 117 10897 210447;210448;210449;210450;210451;210452;210453;210454;210455;210456;210457;210458;210459;210460;210461;210462 129499;129500;129501;129502;129503;129504;129505 129499 7 KLQLVGVGYR Unmodified 1131.6764 0.67642802 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 23.134 22.421 2;3 2.5184E-06 9595 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 187.55 147.28 3524500000 392030000 356350000 364360000 17409000 17182000 16412000 174410000 170840000 146620000 40281000 36468000 32449000 218860000 193970000 205380000 25139000 20046000 25271000 309060000 312870000 323070000 40218000 38798000 46999000 11194 987 10898 210463;210464;210465;210466;210467;210468;210469;210470;210471;210472;210473;210474;210475;210476;210477;210478;210479;210480;210481;210482;210483;210484;210485;210486;210487;210488;210489;210490;210491;210492;210493;210494;210495;210496;210497;210498;210499;210500;210501;210502;210503;210504;210505;210506;210507;210508;210509;210510;210511;210512;210513 129506;129507;129508;129509;129510;129511;129512;129513;129514;129515;129516;129517;129518;129519;129520;129521;129522;129523;129524;129525;129526;129527;129528;129529;129530;129531;129532;129533;129534;129535;129536;129537 129522 29 KLQTLMDVGLTYIR Unmodified 1649.9175 0.91746293 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 2 2 3 1 1 1 1 44.565 43.483 2;3 1.4287E-08 15279 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 149.32 144.78 187300000 5691400 7108300 5925800 1033500 1592600 1468700 0 0 0 4307000 4467600 4673200 4696700 4237600 0 53164000 33474000 44063000 0 4009200 0 2678800 2632400 2076600 11195 222 10899 210514;210515;210516;210517;210518;210519;210520;210521;210522;210523;210524;210525;210526;210527;210528;210529;210530;210531;210532;210533;210534;210535 129538;129539;129540;129541;129542;129543;129544;129545;129546 129542 9 KLQYVNEALKDEHWICGQR Unmodified 2386.1852 0.18519837 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 1 2 29.24 27.973 3;4 4.313E-23 12921 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 197.09 185.47 519880000 64243000 77845000 62742000 0 558730 0 65362000 66724000 56460000 0 0 0 24878000 20904000 19272000 0 0 0 21664000 13121000 26105000 0 0 0 11196 510 10900 210536;210537;210538;210539;210540;210541;210542;210543;210544;210545;210546;210547;210548;210549;210550;210551;210552;210553;210554;210555;210556;210557;210558;210559 129547;129548;129549;129550;129551;129552;129553;129554 129552 8 KLSAGDR Unmodified 745.40825 0.40825167 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 1 By MS/MS 1 4.89 5.8435 2 0.10554 1039 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 57.471 17.368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11197 214 10901 210560 129555 129555 1 KLSFTGSTEIGR Unmodified 1294.6881 0.68811492 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.582 21.001 2 3.8287E-08 8234 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.33 145.66 183170000 32993000 32526000 24942000 0 0 0 15484000 18774000 16144000 0 0 0 5729000 5048900 4681400 0 0 0 8357300 9336800 9151400 0 0 0 11198 1258 10902 210561;210562;210563;210564;210565;210566;210567;210568;210569;210570;210571;210572 129556;129557;129558;129559;129560;129561;129562;129563;129564 129562 9 KLSGGIR Unmodified 729.44972 0.44972255 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.414 11.004 2 0.0020376 2155 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 126.68 92.823 1126900000 35868000 30322000 28147000 4154000 3642300 3775000 226170000 172690000 170460000 29923000 34842000 37383000 24647000 20028000 11391000 16304000 12602000 11840000 52329000 52232000 41010000 32958000 34816000 39375000 11199 645 10903 210573;210574;210575;210576;210577;210578;210579;210580;210581;210582;210583;210584;210585;210586;210587;210588;210589;210590;210591;210592;210593;210594;210595;210596 129565;129566;129567;129568;129569;129570;129571;129572;129573;129574;129575;129576 129565 12 KLSILLLEK Unmodified 1055.6954 0.69543213 711 P0ACA1 yibF Uncharacterized GST-like protein YibF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 33.396 31.846 2;3 0.0020968 15129 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 77.662 77.662 347430000 45665000 36688000 28905000 1638900 825190 676700 26966000 25899000 25991000 963220 0 922950 15976000 15916000 13182000 0 0 0 37738000 36664000 31107000 0 965530 742030 11200 711 10904 210597;210598;210599;210600;210601;210602;210603;210604;210605;210606;210607;210608;210609;210610;210611;210612;210613;210614;210615;210616;210617;210618;210619;210620;210621;210622;210623;210624;210625;210626;210627;210628 129577;129578;129579;129580;129581;129582;129583;129584;129585 129581 9 KLSLEPLIAHR Unmodified 1275.7663 0.76630566 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 2 1 1 1 2 1 1 2 2 2 1 1 1 24.435 23.403 2;3 9.9459E-09 10060 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 179.81 172.53 605260000 20746000 20059000 18694000 2846000 3033500 3734200 103700000 116290000 98829000 7575500 4976700 4199500 32553000 2306100 23096000 0 0 0 53555000 42976000 31949000 3793300 5419200 4921000 11201 553 10905 210629;210630;210631;210632;210633;210634;210635;210636;210637;210638;210639;210640;210641;210642;210643;210644;210645;210646;210647;210648;210649;210650;210651;210652;210653;210654;210655;210656 129586;129587;129588;129589;129590;129591;129592;129593;129594;129595 129592 9 KLSNNTACVFTGK Unmodified 1438.7238 0.7238485 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 2 2 1 2 15.197 16.009 2;3 4.6121E-24 5540 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 272.65 259.06 299500000 70461000 88501000 73578000 0 372640 287720 13560000 13293000 8897700 0 0 0 4078000 1365200 4690800 0 0 0 7048900 3952000 9414600 0 0 0 11202 26 10906 210657;210658;210659;210660;210661;210662;210663;210664;210665;210666;210667;210668;210669;210670;210671;210672;210673;210674;210675;210676;210677;210678;210679;210680 129596;129597;129598;129599;129600;129601 129596 6 KLSYTGEVK Unmodified 1023.5601 0.56006086 402 P0A870 talB Transaldolase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 2 1 1 2 2 2 1 1 1 2 2 2 3 2 3 12.218 13.009 1;2 1.401E-05 3725 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 165.15 136.64 8481400000 502710000 522030000 514750000 0 2420600 2482900 878110000 874940000 832390000 2182500 2349100 1852800 751810000 760580000 675140000 0 0 0 783630000 683210000 690860000 0 0 0 11203 402 10907 210681;210682;210683;210684;210685;210686;210687;210688;210689;210690;210691;210692;210693;210694;210695;210696;210697;210698;210699;210700;210701;210702;210703;210704;210705;210706;210707;210708;210709;210710;210711;210712 129602;129603;129604;129605;129606;129607;129608;129609;129610;129611;129612 129607 8 KLTAVKPIIIDVK Unmodified 1436.933 0.93303664 1570 P45470 yhbO Protein YhbO yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 1 1 1 1 1 1 25.014 24.013 2;3 1.3007E-06 10624 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.69 144.91 438710000 82215000 103570000 76163000 0 0 0 37913000 45959000 47336000 0 0 0 7805100 5133400 4323800 0 0 0 9590200 10189000 8518000 0 0 0 11204 1570 10908 210713;210714;210715;210716;210717;210718;210719;210720;210721;210722;210723;210724;210725;210726;210727;210728;210729 129613;129614;129615;129616;129617;129618;129619;129620 129617 8 KLTPEQAEQIK Unmodified 1283.7085 0.70851601 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 2 1 13.137 14.031 2 2.6567E-28 4356 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 226.4 180.72 807060000 105820000 93079000 86186000 0 0 0 0 0 1942300 0 0 0 80387000 85493000 70960000 0 0 0 102350000 96282000 84559000 0 0 0 11205 1505 10909 210730;210731;210732;210733;210734;210735;210736;210737;210738;210739;210740;210741;210742;210743 129621;129622;129623;129624;129625;129626;129627;129628;129629;129630;129631;129632 129621 12 KLTPGCLFVALK Unmodified 1345.7792 0.77917853 1074 P11880 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.743 35.138 3 0.00014597 17542 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.338 77.412 89472000 9118600 10117000 8341200 0 0 0 0 7499800 10008000 0 0 0 5980800 4980100 5829200 0 0 0 8283400 9882100 9431000 0 0 0 11206 1074 10910 210744;210745;210746;210747;210748;210749;210750;210751;210752;210753;210754;210755 129633;129634 129633 2 KLTPPQISTLMR Unmodified 1383.7908 0.79080585 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.806 29.726 3 1.5057E-06 14022 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 108.68 102.74 99666000 9046400 5885500 6884400 0 0 0 9383500 7729800 6038800 0 0 0 5154100 7068100 6694000 2866900 2064400 3123200 10289000 8380900 9057100 0 0 0 11207 433 10911 210756;210757;210758;210759;210760;210761;210762;210763;210764;210765;210766;210767;210768;210769;210770 129635;129636;129637;129638;129639;129640;129641;129642;129643 129639 9 KLTQSDIR Unmodified 959.53999 0.53999412 1747 P69805 manZ Mannose permease IID component yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 11.082 11.748 2 7.4041E-05 2901 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.26 117.24 1070800000 17722000 14670000 18689000 16155000 6924100 13994000 126280000 139160000 136320000 90403000 70161000 76454000 48077000 46155000 43175000 0 0 6340600 52882000 50038000 43248000 18223000 18975000 16781000 11208 1747 10912 210771;210772;210773;210774;210775;210776;210777;210778;210779;210780;210781;210782;210783;210784;210785;210786;210787;210788;210789;210790;210791;210792;210793;210794;210795 129644;129645;129646;129647 129644 3 KLTTDASEWEVLLDGEK Unmodified 1932.968 0.96803775 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 2 2 2 2 2 2 44.965 43.371 2;3 4.3361E-31 21626 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 290.39 285.54 640540000 37955000 11803000 9482200 0 0 0 57873000 56206000 66337000 1357100 1502500 0 64994000 60672000 60087000 0 0 0 74145000 70820000 67312000 0 0 0 11209 1500 10913 210796;210797;210798;210799;210800;210801;210802;210803;210804;210805;210806;210807;210808;210809;210810;210811;210812;210813;210814;210815;210816;210817;210818;210819;210820 129648;129649;129650;129651;129652;129653;129654;129655;129656;129657;129658 129648 11 KLVAVVPSPSWGR Unmodified 1394.8034 0.80341945 1298 P27298 prlC Oligopeptidase A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.014 29.658 3 0.0029034 14350 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 62.891 57.407 192780000 21558000 21902000 15891000 0 0 0 18943000 16289000 20093000 0 0 0 9161100 10327000 8291900 0 0 0 16202000 17823000 16303000 0 0 0 11210 1298 10914 210821;210822;210823;210824;210825;210826;210827;210828;210829;210830;210831;210832 129659;129660;129661;129662;129663;129664;129665;129666 129659 8 KLVDITMTQNQITYDR Unmodified 1937.9881 0.98806169 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.333 30.994 2;3 1.0233E-18 14588 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 188.47 178.27 499270000 35058000 29304000 31035000 0 0 0 33646000 39373000 38459000 0 0 0 41153000 42557000 42485000 0 0 0 55266000 55666000 55263000 0 0 0 11211 1073 10915 210833;210834;210835;210836;210837;210838;210839;210840;210841;210842;210843;210844;210845;210846;210847;210848;210849;210850;210851;210852;210853;210854;210855;210856 129667;129668;129669;129670;129671;129672;129673;129674;129675;129676;129677;129678;129679;129680;129681 129672 15 KLVEVPVGFK Unmodified 1114.675 0.67503104 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 27.296 26.037 2;3 4.4466E-05 11922 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 142.55 142.55 1723700000 142160000 145530000 119910000 402930 0 1215800 184540000 180020000 167830000 684820 692300 543760 115080000 105950000 128090000 0 0 0 146900000 152170000 131960000 0 0 0 11212 1450 10916 210857;210858;210859;210860;210861;210862;210863;210864;210865;210866;210867;210868;210869;210870;210871;210872;210873;210874;210875;210876;210877;210878;210879;210880;210881;210882;210883;210884;210885;210886 129682;129683;129684;129685;129686;129687;129688;129689;129690;129691;129692;129693;129694 129685 12 KLVNADIEK Unmodified 1028.5866 0.58660996 627 P0AB43 ycgL Protein YcgL yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.72 13.561 2 0.0012351 4017 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 96.143 75.518 179130000 16510000 15438000 17135000 0 0 0 15034000 14390000 11883000 0 0 0 12416000 12785000 13446000 0 0 0 16551000 16876000 16664000 0 0 0 11213 627 10917 210887;210888;210889;210890;210891;210892;210893;210894;210895;210896;210897;210898 129695;129696;129697;129698 129697 4 KLVPYYTVK Unmodified 1109.6485 0.64848194 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 19.686 20.14 2 0.00039213 7952 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.73 116.73 220970000 0 0 0 0 0 0 28909000 21354000 25867000 0 0 0 21359000 19369000 19252000 0 0 0 34762000 28069000 22034000 0 0 0 11214 24 10918 210899;210900;210901;210902;210903;210904;210905;210906;210907;210908 129699;129700;129701;129702;129703;129704;129705;129706 129701 8 KLVVATDTAFVPFEFK Unmodified 1810.9869 0.9869227 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 46.74 45.402 2;3 2.5781E-08 21987 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.7 142.47 588880000 122620000 126560000 119870000 0 0 0 10422000 8416500 10758000 0 0 0 45139000 38956000 35905000 0 0 0 23695000 25399000 21133000 0 0 0 11215 877 10919 210909;210910;210911;210912;210913;210914;210915;210916;210917;210918;210919;210920;210921;210922;210923;210924;210925;210926;210927;210928;210929 129707;129708;129709;129710;129711;129712;129713;129714;129715;129716;129717;129718;129719;129720;129721 129716 10 KLWSDQDVTTAAALLK Unmodified 1758.9516 0.95159983 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.691 39.835 3 2.1335E-05 16239 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 86.641 79.05 225240000 9178900 4567900 6813100 5889200 3644500 4122000 15651000 17549000 14019000 11726000 13436000 10083000 12056000 11636000 8153800 0 0 0 17934000 24121000 15835000 5863700 6340500 6625500 11216 201 10920 210930;210931;210932;210933;210934;210935;210936;210937;210938;210939;210940;210941;210942;210943;210944;210945;210946;210947;210948;210949;210950;210951 129722;129723;129724;129725;129726;129727;129728;129729;129730;129731;129732;129733;129734;129735;129736 129722 15 KLWTDGADGEPISLYCAFNELDEAR Unmodified 2869.3229 0.32287364 80 P03018 uvrD DNA helicase II yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 53.353 52.563 3 1.2003E-30 19635 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 190.24 188.02 79181000 3807000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17881000 20861000 27709000 0 3352600 0 2919200 2650300 0 11217 80 10921 210952;210953;210954;210955;210956;210957;210958 129737;129738 129737 2 KLYPNVDFYSGIILK Unmodified 1768.9764 0.97635802 657 P0ABH7 gltA Citrate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 45.638 44.1 2;3 1.0888E-08 21321 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.33 135.7 1229900000 237960000 255540000 218800000 0 0 0 62000000 57448000 58024000 2940000 5663800 2328500 34156000 30377000 22300000 0 0 0 81924000 81826000 78652000 0 0 0 11218 657 10922 210959;210960;210961;210962;210963;210964;210965;210966;210967;210968;210969;210970;210971;210972;210973;210974;210975;210976;210977;210978;210979;210980;210981;210982;210983;210984;210985 129739;129740;129741;129742;129743;129744;129745;129746;129747;129748;129749 129749 10 KMALELFK Unmodified 978.55722 0.55722409 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.981 27.686 2 0.0011252 10160 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 118.5 101.57 299980000 0 0 2305300 0 0 0 0 0 0 15677000 13809000 17755000 0 0 0 75985000 42833000 51914000 2191200 3398600 0 24816000 25291000 24003000 11219 458 10923 210986;210987;210988;210989;210990;210991;210992;210993;210994;210995;210996;210997 129750;129751;129752;129753;129754;129755;129756;129757 129757 8 KMALELFKPFIYGK Oxidation (M) 1699.9371 0.93713574 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 6 4 6 9 7 6 6 8 8 38.067 36.643 2;3;4 1.2656E-05 12149 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 93.823 92.2 1719300000 0 0 0 767660 0 355200 0 0 0 163220000 122670000 135990000 0 0 0 315830000 260140000 246580000 0 0 0 171620000 149550000 152550000 11220 458 10924 210998;210999;211000;211001;211002;211003;211004;211005;211006;211007;211008;211009;211010;211011;211012;211013;211014;211015;211016;211017;211018;211019;211020;211021;211022;211023;211024;211025;211026;211027;211028;211029;211030;211031;211032;211033;211034;211035;211036;211037;211038;211039;211040;211041;211042;211043;211044;211045;211046;211047;211048;211049;211050;211051;211052;211053;211054;211055;211056;211057;211058;211059 129758;129759;129760;129761;129762;129763;129764;129765;129766;129767;129768;129769;129770;129771;129772;129773;129774;129775;129776;129777;129778;129779;129780;129781;129782;129783;129784;129785;129786;129787;129788;129789;129790;129791;129792;129793;129794;129795;129796;129797;129798;129799;129800;129801;129802;129803;129804;129805;129806;129807;129808;129809;129810;129811;129812;129813;129814;129815;129816;129817;129818;129819;129820;129821;129822;129823;129824;129825;129826;129827;129828;129829;129830;129831;129832;129833;129834 129772 236 75 KMALELFKPFIYGK Unmodified 1683.9422 0.94222112 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 5 6 4 1 8 9 9 1 2 1 6 6 7 42.302 40.998 2;3;4 3.0929E-14 13918 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 197.56 194.03 35261000000 0 0 0 4108300 9274300 9945000 0 0 0 1821200000 1764100000 1496100000 0 0 3301800 8074000000 7745600000 8658600000 3269900 10000000 6623800 1716200000 1940700000 1998300000 11221 458 10924 211060;211061;211062;211063;211064;211065;211066;211067;211068;211069;211070;211071;211072;211073;211074;211075;211076;211077;211078;211079;211080;211081;211082;211083;211084;211085;211086;211087;211088;211089;211090;211091;211092;211093;211094;211095;211096;211097;211098;211099;211100;211101;211102;211103;211104;211105;211106;211107;211108;211109;211110;211111;211112;211113;211114;211115;211116;211117;211118;211119;211120;211121;211122;211123;211124;211125;211126;211127;211128;211129 129835;129836;129837;129838;129839;129840;129841;129842;129843;129844;129845;129846;129847;129848;129849;129850;129851;129852;129853;129854;129855;129856;129857;129858;129859;129860;129861;129862;129863;129864;129865;129866;129867;129868;129869;129870;129871;129872;129873;129874;129875;129876;129877;129878;129879;129880;129881;129882;129883;129884;129885;129886;129887;129888;129889;129890;129891;129892;129893;129894;129895;129896 129853 61 KMAVADSEENWETF Unmodified 1655.7137 0.71373732 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 38.309 36.589 2 1.6091E-05 12754 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 104.52 104.52 25703000 0 0 0 8294500 8535800 8872900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11222 76 10925 211130;211131;211132 129897;129898;129899 129899 3 KMLAHCEAVTPIR Unmodified 1524.7905 0.79048828 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 13.729 14.59 3 0.16553 4663 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 24.415 19.701 45391000 6436500 0 0 0 0 0 6716900 6478900 0 0 0 0 3630600 0 2842800 0 0 0 7219900 5383900 6682000 0 0 0 11223 869 10926 211133;211134;211135;211136;211137;211138;211139;211140 129900 129900 0 KMNMDGVR Unmodified 949.44736 0.44735606 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 3 3 3 11.626 12.182 2 0.00086996 3207 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.12 118.43 9163900000 114330000 89510000 82805000 1592100000 1734200000 1380500000 203800000 158840000 187810000 106590000 89818000 104930000 97719000 100500000 77201000 58875000 53511000 49995000 181730000 176750000 156230000 785240000 754750000 826150000 11224 939 10927 211141;211142;211143;211144;211145;211146;211147;211148;211149;211150;211151;211152;211153;211154;211155;211156;211157;211158;211159;211160;211161;211162;211163;211164;211165;211166;211167;211168;211169;211170;211171;211172;211173;211174;211175;211176 129901;129902;129903;129904;129905;129906;129907;129908;129909;129910;129911;129912;129913;129914;129915;129916 129905 16 KMNMDGVR 2 Oxidation (M) 981.43719 0.43718531 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 2 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 1 1 1 1 1 1 8.7479 9.3838 2 0.07402 1683 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 40.268 31.585 11177000 0 0 0 5648300 354380 75174 0 0 0 481050 404900 368370 0 0 0 0 0 0 0 0 0 3845000 0 0 11225 939 10927 211177;211178;211179;211180;211181;211182;211183;211184 129917;129918 129917 435;436 2 KMNMDGVR Oxidation (M) 965.44227 0.44227069 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 3 3 2 2 2 1 2 1 1 2 2 2 2 9.6915 10.422 2 0.0012776 1902 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 138.83 131.92 581630000 8542100 10595000 5591200 56969000 66979000 79526000 15515000 0 16014000 5510200 0 0 0 0 830540 0 0 0 17873000 15675000 17774000 93310000 84991000 85932000 11226 939 10927 211185;211186;211187;211188;211189;211190;211191;211192;211193;211194;211195;211196;211197;211198;211199;211200;211201;211202;211203;211204;211205;211206;211207;211208;211209;211210;211211;211212;211213 129919;129920;129921;129922;129923;129924;129925 129919 435;436 6 KMTLGIRPEHIALSSQAEGGVPMVMDTLEILGADNLAHGR Unmodified 4227.1603 0.16025253 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 2 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 50.683 50.225 5 2.0454E-08 20000 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 87.016 86.969 38383000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3971600 5757900 4295100 0 0 11764000 0 0 12595000 11227 1064 10928 211214;211215;211216;211217;211218 129926;129927 129927 2 KMTPITGGFANK Unmodified 1263.6645 0.66454271 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.556 17.95 2 4.6661E-05 5364 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 111.27 102.35 92399000 5001300 6968900 3608900 0 0 0 0 3392800 0 7709700 6865700 6539400 2794500 1867100 1688900 2962900 1154000 1043700 2510400 5912500 10837000 7652500 6790800 7097600 11228 75 10929 211219;211220;211221;211222;211223;211224;211225;211226;211227;211228;211229;211230;211231;211232;211233;211234;211235;211236;211237 129928;129929;129930;129931;129932;129933 129929 6 KMVEREEAVVWDILDEVIR Oxidation (M) 2344.2097 0.20968178 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 4 1 4 6 5 1 3 4 3 53.712 52.913 2;3;4 4.6725E-13 19692 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 138.01 125.63 2295300000 0 0 0 0 0 0 0 0 0 69487000 101190000 110630000 0 0 4557500 333990000 661400000 557070000 6516600 0 0 133230000 141000000 176230000 11229 458 10930 211238;211239;211240;211241;211242;211243;211244;211245;211246;211247;211248;211249;211250;211251;211252;211253;211254;211255;211256;211257;211258;211259;211260;211261;211262;211263;211264;211265;211266;211267;211268;211269;211270;211271;211272 129934;129935;129936;129937;129938;129939;129940;129941;129942;129943;129944;129945;129946;129947;129948;129949;129950;129951;129952;129953;129954;129955;129956;129957;129958;129959 129944 237 25 KMVEREEAVVWDILDEVIR Unmodified 2328.2148 0.21476716 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 4 3 3 4 5 3 3 3 54.271 53.308 2;3;4 2.8399E-94 19986 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 313.04 313.04 18967000000 0 0 0 2321300 2444400 0 0 10841000 0 349680000 374210000 736360000 0 0 0 2664400000 4356400000 6713600000 0 0 0 1320300000 1256400000 1180200000 11230 458 10930 211273;211274;211275;211276;211277;211278;211279;211280;211281;211282;211283;211284;211285;211286;211287;211288;211289;211290;211291;211292;211293;211294;211295;211296;211297;211298;211299;211300;211301;211302;211303;211304;211305;211306;211307;211308 129960;129961;129962;129963;129964;129965;129966;129967;129968;129969;129970;129971;129972;129973;129974;129975;129976;129977;129978;129979;129980;129981;129982;129983;129984;129985;129986;129987;129988;129989;129990;129991 129968 32 KMVINALNANVK Unmodified 1313.7489 0.74894104 195 P08997 aceB Malate synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 21.235 21.527 2;3 1.6638E-11 8448 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 182.76 174.72 862440000 231510000 210530000 175270000 2782600 3537400 2720900 53532000 45331000 49723000 968370 0 0 12172000 10493000 10575000 0 0 0 22919000 17092000 13294000 0 0 0 11231 195 10931 211309;211310;211311;211312;211313;211314;211315;211316;211317;211318;211319;211320;211321;211322;211323;211324;211325;211326;211327;211328;211329;211330;211331;211332;211333;211334;211335;211336;211337;211338;211339 129992;129993;129994;129995;129996;129997;129998;129999;130000;130001;130002 129997 9 KNDFSISLPVDR Unmodified 1389.7252 0.72522871 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 2 2 1 1 2 2 2 2 2 2 2 1 33.538 31.974 2;3 1.4439E-05 15217 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 144.65 125.87 285880000 24439000 21077000 18497000 1164900 1171700 897300 10589000 25512000 21592000 3047700 1496900 0 15828000 22099000 15908000 0 0 0 27029000 34714000 33739000 4724400 0 2356400 11232 1617 10932 211340;211341;211342;211343;211344;211345;211346;211347;211348;211349;211350;211351;211352;211353;211354;211355;211356;211357;211358;211359;211360;211361;211362;211363;211364;211365;211366;211367;211368;211369;211370 130003;130004;130005;130006;130007;130008;130009;130010;130011;130012;130013;130014;130015;130016;130017 130009 14 KNDPASYVEVEK Unmodified 1377.6776 0.67760981 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 17.006 17.692 2 3.0808E-10 6371 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.1 111.32 138660000 23549000 21296000 22819000 0 0 0 15790000 13470000 13482000 0 0 0 0 0 7241400 0 0 0 11703000 0 9305200 0 0 0 11233 184 10933 211371;211372;211373;211374;211375;211376;211377;211378;211379;211380 130018;130019;130020;130021;130022;130023 130021 4 KNEDIEHSHTVDHH Unmodified 1696.7554 0.75535964 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 5.1561 6.0664 3 0.11823 1342 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 26.541 25.852 48405000 0 0 0 0 0 0 3190200 4710300 4401900 0 0 0 6985400 5292700 4244200 0 0 0 7912400 6539000 5128800 0 0 0 11234 1365 10934 211381;211382;211383;211384;211385;211386;211387;211388;211389 130024 130024 1 KNESQLALDGGDNLAYIATSMVNLR Unmodified 2692.349 0.34902881 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 53.313 51.876 3 2.1029E-10 25418 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 124.51 123.53 516510000 36815000 35968000 42250000 492900 0 0 22996000 24212000 25199000 0 0 0 45680000 44741000 48175000 0 0 0 56050000 67292000 66641000 0 0 0 11235 346 10935 211390;211391;211392;211393;211394;211395;211396;211397;211398;211399;211400;211401;211402 130025;130026;130027;130028;130029;130030;130031;130032 130028 5 KNEVVNFLR Unmodified 1117.6244 0.62439245 1886 P77212 rclA Probable pyridine nucleotide-disulfide oxidoreductase RclA yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 22.935 22.468 3 0.00036058 9794 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.623 81.09 22328000 11754000 6021400 0 0 0 0 0 4552000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11236 1886 10936 211403;211404;211405 130033 130033 1 KNFITLFTGNETSDTWFNAAIAMNKPWSEK Oxidation (M) 3476.6711 0.67109123 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 2 By MS/MS By MS/MS By MS/MS 4 4 4 51.053 51.108 3;4 9.5067E-32 19568 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 194.25 189.14 677540000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 252460000 246450000 178630000 0 0 0 0 0 0 11237 36 10937 211406;211407;211408;211409;211410;211411;211412;211413;211414;211415;211416;211417 130034;130035;130036;130037;130038;130039;130040;130041;130042;130043;130044 130035 18 11 KNFITLFTGNETSDTWFNAAIAMNKPWSEK Unmodified 3460.6762 0.67617661 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 3 3 3 53.196 52.769 3;4;5 2.9601E-67 19734 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 264.23 263.76 9296100000 0 0 0 0 0 0 0 0 0 10983000 7349400 8267900 0 0 0 2802600000 3241700000 3225200000 0 0 0 0 0 0 11238 36 10937 211418;211419;211420;211421;211422;211423;211424;211425;211426;211427;211428;211429;211430 130045;130046;130047;130048;130049;130050;130051 130050 7 KNGIDTLK Unmodified 887.50763 0.50763136 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.633 12.236 2 0.0021767 2659 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 106.36 51.831 152950000 16243000 14471000 15480000 3681100 5404500 3395000 8981600 5411000 7578700 0 0 0 0 0 0 21756000 28694000 21353000 0 0 0 505490 0 0 11239 841 10938 211431;211432;211433;211434;211435;211436;211437;211438;211439;211440;211441;211442;211443 130052;130053;130054 130052 2 KNGTLPWLRPDAK Unmodified 1494.8307 0.83069683 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.926 21.786 3 0.011181 7461 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 54.276 48.328 255280000 16926000 18775000 18581000 2016200 2275100 2515900 35054000 30828000 31649000 9139200 7651900 7283100 9664500 12173000 11743000 0 0 0 13775000 13080000 12151000 0 0 0 11240 388 10939 211444;211445;211446;211447;211448;211449;211450;211451;211452;211453;211454;211455;211456;211457;211458;211459;211460;211461 130055;130056 130056 2 KNHKEEMSQLTGQNSGDVNVEINVAPGK Unmodified 3022.4778 0.47781115 16 CON__P35527 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 24.419 22.994 4;5 6.4496E-06 8179 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 82.639 81.817 48067000 0 0 0 0 0 0 0 0 0 16350000 13359000 12991000 0 0 0 0 0 0 0 0 0 2457500 2909900 0 + 11241 16 10940 211462;211463;211464;211465;211466;211467;211468;211469 130057;130058;130059;130060;130061 130059 5 KNIEFFEAR Unmodified 1152.5928 0.59275797 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.96 22.285 3 0.00025517 7541 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 92.051 82.694 320500000 37884000 39764000 38710000 0 3533800 3767300 14123000 17962000 15479000 3126600 0 0 15161000 0 0 0 0 0 42386000 33960000 39473000 5311600 4952800 4902600 11242 364 10941 211470;211471;211472;211473;211474;211475;211476;211477;211478;211479;211480;211481;211482;211483;211484;211485 130062;130063;130064;130065;130066;130067 130062 5 KNIFSGR Unmodified 820.45554 0.45553621 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.219 13.051 2 0.0012706 3821 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.85 70.815 290440000 36277000 39687000 34205000 0 0 0 19698000 14054000 17118000 0 0 0 19196000 16687000 15500000 0 0 0 31262000 24664000 22095000 0 0 0 11243 1444 10942 211486;211487;211488;211489;211490;211491;211492;211493;211494;211495;211496;211497 130068;130069;130070;130071;130072 130070 5 KNIGVNVK Unmodified 870.5287 0.52870115 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 11.245 11.996 1 0.058183 3028 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 48.787 35.579 193850000 70248000 63280000 57408000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2910700 0 0 0 0 11244 1217 10943 211498;211499;211500;211501 130073 130073 0 KNNLTSAYIR Unmodified 1178.6408 0.6407708 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.761 15.509 2 0.0012533 5281 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.308 72.469 69934000 8510000 15397000 7492400 0 0 0 5621200 4752700 7603900 0 0 0 0 2545900 3218300 0 0 0 4011900 5821500 4958600 0 0 0 11245 636 10944 211502;211503;211504;211505;211506;211507;211508;211509;211510;211511;211512 130074 130074 1 KNNPLLVGESGVGK Unmodified 1410.7831 0.78307794 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 18.874 19.258 3 0.00027649 7206 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.456 65.487 32556000 0 11814000 8822900 851590 654510 0 6765300 0 0 0 1217300 1012200 0 0 1418100 0 0 0 0 0 0 0 0 0 11246 658 10945 211513;211514;211515;211516;211517;211518;211519;211520 130075 130075 1 KNNQHDVAIVR Unmodified 1292.6949 0.69493163 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 10.888 11.659 2;3 3.0243E-10 2921 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 208.63 193.95 1407500000 100400000 109380000 97521000 0 2904900 0 63454000 59023000 72392000 0 0 0 96367000 94271000 80262000 0 0 0 215400000 219670000 181680000 5080500 4471700 5175400 11247 937 10946 211521;211522;211523;211524;211525;211526;211527;211528;211529;211530;211531;211532;211533;211534;211535;211536;211537;211538;211539;211540;211541;211542;211543;211544;211545;211546;211547;211548 130076;130077;130078;130079;130080;130081;130082;130083;130084;130085;130086;130087;130088;130089;130090 130081 15 KNQAILPLK Unmodified 1023.6441 0.64406526 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.263 17.735 2 0.0047867 5312 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 80.229 69.008 130510000 7568800 8549800 7225700 0 0 0 13012000 10046000 12009000 2344400 1895700 2029100 6525500 7458600 7987100 0 496220 0 14803000 13041000 12307000 928200 1254200 1027200 11248 883 10947 211549;211550;211551;211552;211553;211554;211555;211556;211557;211558;211559;211560;211561;211562;211563;211564;211565;211566;211567 130091 130091 1 KNQLEVMR Unmodified 1016.5437 0.54369929 195 P08997 aceB Malate synthase A yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.708 13.573 2 7.1167E-07 4124 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 199.07 132.08 2735200000 648140000 614840000 631480000 0 1180200 0 169860000 163840000 169940000 0 0 0 51485000 46756000 45982000 0 0 0 68268000 62940000 60504000 0 0 0 11249 195 10948 211568;211569;211570;211571;211572;211573;211574;211575;211576;211577;211578;211579;211580 130092;130093;130094;130095;130096 130094 5 KNQLEVMR Oxidation (M) 1032.5386 0.53861391 195 P08997 aceB Malate synthase A yes yes 0 1 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.075 11.86 2 0.039256 3000 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.208 41.904 407240000 84021000 91505000 83126000 0 0 0 39755000 37295000 34633000 0 0 0 0 10842000 0 0 0 0 14930000 11130000 0 0 0 0 11250 195 10948 211581;211582;211583;211584;211585;211586;211587;211588;211589 130097 130097 64 1 KNSETLENFSEK Unmodified 1424.6783 0.6783381 942 P0AFH6 oppC Oligopeptide transport system permease protein OppC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 1 2 2 1 1 1 1 1 1 14.424 15.123 2;3 4.0196E-23 4992 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 232.17 210.8 126290000 18797000 19452000 17089000 5922500 6044100 6892200 5459100 5341700 6194600 1480700 3850300 2605500 4152200 3776800 4504600 0 0 0 5716100 3841900 5169300 0 0 0 11251 942 10949 211590;211591;211592;211593;211594;211595;211596;211597;211598;211599;211600;211601;211602;211603;211604;211605;211606;211607;211608;211609;211610;211611;211612 130098;130099;130100;130101;130102;130103;130104;130105;130106;130107;130108;130109;130110 130106 13 KNSETLENFSEKLEVEGR Unmodified 2108.0386 0.038576936 942 P0AFH6 oppC Oligopeptide transport system permease protein OppC yes yes 0 0 2 By matching By MS/MS By MS/MS By matching 1 1 1 1 27.376 25.937 4 0.0019862 8570 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 59.733 56.446 15959000 0 0 0 4063300 4890600 5234100 0 0 0 0 0 1771000 0 0 0 0 0 0 0 0 0 0 0 0 11252 942 10950 211613;211614;211615;211616 130111;130112 130112 2 KNSTAQAGCK Unmodified 1063.508 0.50804206 1119 P16456 selD Selenide, water dikinase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 4.1233 5.0114 2 0.0067856 788 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 66.299 56.711 13566000 0 0 0 0 0 0 0 0 0 0 0 0 1851900 1778800 1855500 0 0 0 1998100 3205200 2876400 0 0 0 11253 1119 10951 211617;211618;211619;211620;211621;211622 130113;130114;130115;130116 130113 4 KNVEYLVVEAAGETR Unmodified 1676.8733 0.87334951 967 P0AFW8 rof Protein rof yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 1 2 2 2 2 2 2 30.529 29.108 2;3 1.0326E-14 13537 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 214.81 204.44 554820000 53296000 57425000 45721000 0 0 0 65803000 61068000 64302000 2259200 0 0 36299000 32572000 39619000 0 0 0 28756000 35713000 31988000 0 0 0 11254 967 10952 211623;211624;211625;211626;211627;211628;211629;211630;211631;211632;211633;211634;211635;211636;211637;211638;211639;211640;211641;211642;211643;211644;211645;211646;211647;211648 130117;130118;130119;130120;130121;130122;130123;130124;130125;130126;130127;130128;130129;130130;130131;130132;130133;130134;130135;130136;130137;130138;130139;130140 130132 24 KPADEAK Unmodified 757.39702 0.39701828 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 4.0844 4.9122 2 0.059059 663 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 63.565 37.738 61556000 9711700 8271800 7371600 0 0 0 0 0 0 0 0 0 4108400 4309500 2969900 0 0 0 8572800 8125300 8115300 0 0 0 11255 154 10953 211649;211650;211651;211652;211653;211654;211655;211656;211657;211658 130141;130142;130143;130144;130145 130142 5 KPATAGMENR Oxidation (M) 1089.5237 0.52369213 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 4.4231 5.3112 2 0.010284 839 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 72.325 48.557 96000000 0 0 0 0 0 0 21748000 19427000 16400000 0 0 0 4706800 5454000 4489300 0 0 0 7672600 7793300 8309800 0 0 0 11256 1109 10954 211659;211660;211661;211662;211663;211664;211665;211666;211667 130146;130147;130148 130147 492 3 KPATAGMENR Unmodified 1073.5288 0.52877751 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 2 2 2 2 2 2 8.5103 9.3963 2;3 3.0964E-05 2432 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 147.41 120.16 1845500000 265690000 243720000 38717000 0 206480 218360 188680000 128080000 128690000 0 0 0 44335000 64349000 0 0 0 0 220600000 224590000 297580000 0 0 0 11257 1109 10954 211668;211669;211670;211671;211672;211673;211674;211675;211676;211677;211678;211679;211680;211681;211682;211683;211684;211685;211686;211687;211688;211689;211690 130149;130150;130151;130152;130153;130154;130155;130156;130157;130158;130159;130160;130161;130162;130163;130164;130165;130166;130167;130168;130169;130170;130171;130172 130155 24 KPDAALVDFLCENADVITK Unmodified 2118.0667 0.066705942 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 2 49.776 48.383 2;3 1.3387E-17 23483 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 209.25 181.29 667620000 88457000 74157000 65899000 0 0 0 36878000 60564000 41488000 0 0 0 46560000 50515000 41055000 0 0 0 61388000 35227000 65434000 0 0 0 11258 904 10955 211691;211692;211693;211694;211695;211696;211697;211698;211699;211700;211701;211702;211703;211704;211705;211706;211707;211708;211709;211710;211711;211712 130173;130174;130175;130176;130177;130178;130179;130180;130181;130182;130183;130184;130185;130186;130187;130188;130189;130190;130191;130192 130187 20 KPDHYEEIHMPK Unmodified 1522.7238 0.7238485 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 2 2 1 2 2 2 2 2 2 3 2 2 2 2 2 13.127 13.76 2;3;4 1.1005E-05 3857 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 119.74 117.43 832420000 51098000 36632000 39166000 0 0 0 55747000 57369000 12856000 6126200 5917600 5400300 90837000 35078000 35342000 0 0 0 163630000 147260000 69852000 6860600 6580100 6659800 11259 660 10956 211713;211714;211715;211716;211717;211718;211719;211720;211721;211722;211723;211724;211725;211726;211727;211728;211729;211730;211731;211732;211733;211734;211735;211736;211737;211738;211739;211740;211741;211742;211743;211744;211745;211746;211747;211748;211749 130193;130194;130195;130196;130197;130198;130199;130200;130201;130202;130203;130204;130205 130204 12 KPDNWEIVGK Unmodified 1184.619 0.61897272 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 19.222 19.824 2;3 8.0835E-05 7580 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 133.75 123.04 97211000 33386000 25891000 28800000 0 0 0 0 0 0 0 0 0 0 1396000 2016400 0 0 0 2466500 3254900 0 0 0 0 11260 1501 10957 211750;211751;211752;211753;211754;211755;211756;211757;211758;211759 130206;130207;130208;130209 130209 4 KPDNWEIVGKPQSQEAYGCMLR Unmodified 2605.2417 0.24172697 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 1 2 1 1 31.032 29.699 3;4 3.1086E-15 13790 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.6 137.88 754980000 242110000 186540000 181930000 0 0 0 9693900 10773000 35374000 0 0 0 19534000 6622800 6480600 0 0 0 34163000 11726000 10036000 0 0 0 11261 1501 10958 211760;211761;211762;211763;211764;211765;211766;211767;211768;211769;211770;211771;211772;211773;211774;211775;211776;211777 130210;130211;130212;130213;130214;130215;130216;130217;130218;130219 130219 10 KPEEIEALMVAAR Unmodified 1455.7755 0.77554972 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 32.733 31.332 2;3 2.2773E-17 14641 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 212.27 174.54 2071200000 248180000 220210000 193070000 504950 591930 0 192630000 183620000 185810000 0 0 0 127960000 120440000 118780000 0 0 0 160670000 160250000 158500000 0 0 0 11262 1100 10959 211778;211779;211780;211781;211782;211783;211784;211785;211786;211787;211788;211789;211790;211791;211792;211793;211794;211795;211796;211797;211798;211799;211800;211801;211802;211803 130220;130221;130222;130223;130224;130225;130226;130227;130228;130229;130230;130231;130232;130233;130234;130235;130236;130237;130238;130239;130240;130241;130242;130243 130236 23 KPEITVPVVTDAQK Unmodified 1523.8559 0.85590853 110 P05458 ptrA Protease 3 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 25.241 24.196 3 0.01251 10812 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 43.861 37.384 92804000 12020000 0 8448200 0 0 0 9855600 12536000 0 0 0 0 7927100 9975500 9041000 0 0 0 12998000 10003000 0 0 0 0 11263 110 10960 211804;211805;211806;211807;211808;211809;211810;211811;211812 130244;130245;130246;130247 130245 2 KPELDAK Unmodified 799.44397 0.44396847 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 2 3 3 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 8.1862 8.8427 2 0.0012716 1820 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.83 101.8 1716300000 0 461370000 485080000 6440400 11637000 6433400 15243000 24418000 26656000 33476000 24288000 30869000 183390000 162570000 81671000 21692000 19333000 21007000 1852800 1997200 1932200 32724000 32881000 29369000 11264 374 10961 211813;211814;211815;211816;211817;211818;211819;211820;211821;211822;211823;211824;211825;211826;211827;211828;211829;211830;211831;211832;211833;211834;211835;211836;211837;211838;211839;211840;211841;211842 130248;130249;130250;130251;130252;130253;130254;130255;130256;130257;130258;130259;130260;130261;130262;130263;130264;130265 130256 18 KPEQGTEVLK Unmodified 1127.6186 0.61863837 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 1 1 11.256 12.057 2;3 2.7718E-09 2880 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 198.61 128.09 5764000000 30352000 30217000 18738000 0 2333600 1462800 721150000 723770000 624590000 0 0 0 673180000 583510000 661810000 0 0 1839800 626240000 533490000 518010000 5997900 7291400 0 11265 994 10962 211843;211844;211845;211846;211847;211848;211849;211850;211851;211852;211853;211854;211855;211856;211857;211858;211859;211860;211861;211862;211863;211864;211865;211866;211867;211868;211869;211870;211871 130266;130267;130268;130269;130270;130271;130272;130273;130274;130275;130276;130277;130278;130279;130280;130281;130282;130283;130284 130283 19 KPESIFDYR Unmodified 1153.5768 0.57677356 407 P0A884 thyA Thymidylate synthase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.727 22.929 3 0.0661 9869 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 40.331 26.978 80173000 7088800 5086000 5130700 0 0 0 7642300 5294600 5864300 0 0 0 6867000 7346500 6280200 0 0 0 7334300 8370600 7867900 0 0 0 11266 407 10963 211872;211873;211874;211875;211876;211877;211878;211879;211880;211881;211882;211883 130285;130286;130287 130286 0 KPETINYR Unmodified 1019.54 0.53999412 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.657 12.165 2 0.00010024 2561 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 165.11 149.67 19442000000 175980000 0 233900000 16048000 0 0 0 86872000 0 1536700000 1330300000 1383100000 0 79968000 74176000 3701600000 2943200000 2964800000 113750000 136180000 118430000 1559200000 1539200000 1448900000 11267 458 10964 211884;211885;211886;211887;211888;211889;211890;211891;211892;211893;211894;211895;211896;211897;211898;211899;211900;211901 130288;130289;130290;130291;130292;130293;130294;130295;130296;130297;130298;130299;130300;130301;130302;130303;130304;130305;130306 130289 19 KPFGPVDEK Unmodified 1015.5338 0.53384611 259 P0A6L4 nanA N-acetylneuraminate lyase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 12.335 13.148 2 0.00011153 3551 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 138.98 65.936 196070000 30824000 25816000 26011000 0 0 0 12809000 11438000 0 0 0 0 21518000 0 18383000 0 0 0 16650000 17106000 15512000 0 0 0 11268 259 10965 211902;211903;211904;211905;211906;211907;211908;211909;211910;211911 130307;130308;130309;130310;130311 130311 5 KPFMPLLPGFR Unmodified 1301.7318 0.73183441 1553 P42588 patA Putrescine aminotransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 42.871 41.141 3 0.00010299 20495 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 83.862 78.548 37454000 3931900 4084800 3422900 0 0 0 8247400 9125300 7185600 0 0 0 1455600 0 0 0 0 0 0 0 0 0 0 0 11269 1553 10966 211912;211913;211914;211915;211916;211917;211918 130312;130313;130314 130314 3 KPFYVGKPSPWIIR Unmodified 1686.961 0.96098272 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 31.005 29.375 4 9.6509E-05 10031 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 83.204 83.204 28130000 0 0 0 8684400 8765500 9146700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 702020 831150 11270 906 10967 211919;211920;211921;211922;211923 130315;130316;130317 130316 3 KPGDAVVR Unmodified 840.48175 0.48175096 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 10.439 11.206 2 8.1481E-05 2461 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 168.08 114.4 4587500000 451490000 469920000 489830000 0 0 0 263590000 0 0 0 0 3125900 353010000 350140000 260510000 0 0 0 646480000 718000000 581400000 0 0 0 11271 938 10968 211924;211925;211926;211927;211928;211929;211930;211931;211932;211933;211934;211935;211936 130318;130319;130320;130321;130322;130323;130324;130325;130326;130327 130326 9 KPGLTLGIGCETAQFPLPQVGK Unmodified 2310.2406 0.24058798 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.326 43.761 3 7.6639E-07 20411 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 101.71 100.44 619410000 52496000 62460000 52618000 0 0 0 65102000 50212000 47438000 2945900 0 1629500 37805000 41345000 39755000 0 0 0 60315000 56173000 47696000 0 0 1419400 11272 289 10969 211937;211938;211939;211940;211941;211942;211943;211944;211945;211946;211947;211948;211949;211950;211951 130328;130329;130330;130331;130332;130333;130334;130335;130336;130337;130338;130339 130338 12 KPHPDPLLLVAER Unmodified 1483.8511 0.85109792 1394 P32662 gph Phosphoglycolate phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 26.013 24.892 2;3 1.7927E-05 11550 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.991 99.991 600080000 50534000 43166000 50553000 0 0 0 43847000 56032000 41255000 0 0 0 43510000 44885000 41231000 0 0 0 65836000 58869000 60356000 0 0 0 11273 1394 10970 211952;211953;211954;211955;211956;211957;211958;211959;211960;211961;211962;211963;211964;211965;211966;211967;211968;211969;211970;211971;211972;211973;211974;211975 130340;130341;130342;130343;130344;130345;130346;130347;130348 130341 9 KPHPGMLLSAR Unmodified 1205.6703 0.67029679 1659 P63228 gmhB D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.875 13.757 2 0.0035731 4152 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 67.334 59.854 69999000 10288000 0 0 0 0 0 10268000 7876800 0 0 0 0 5200300 6204300 5597000 0 0 0 8518200 9029100 7017700 0 0 0 11274 1659 10971 211976;211977;211978;211979;211980;211981;211982;211983;211984 130349;130350;130351 130349 3 KPHQLSGGQQQR Unmodified 1362.7116 0.71164433 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.8653 7.4953 3 0.018985 1819 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 44.299 38.266 120600000 0 0 0 0 1892300 4124500 10867000 13178000 12264000 5088600 9484000 5320400 5898900 5332500 6160100 0 2336100 0 8747800 5746900 6499000 5131600 5903200 6619600 11275 1754 10972 211985;211986;211987;211988;211989;211990;211991;211992;211993;211994;211995;211996;211997;211998;211999;212000;212001;212002 130352;130353 130352 1 KPICVESCPLR Unmodified 1357.6846 0.68462622 1153 P18776 dmsB Anaerobic dimethyl sulfoxide reductase chain B yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 15.87 16.725 3 0.023105 5413 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 47.361 37.309 47277000 0 0 0 0 0 0 10467000 7425100 8174900 0 0 0 5676400 4053200 2871400 0 0 0 3302100 5307500 0 0 0 0 11276 1153 10973 212003;212004;212005;212006;212007;212008;212009;212010 130354;130355;130356 130356 0 KPIIYDVETLR Unmodified 1345.7606 0.76055158 1017 P0AGG2 tesB Acyl-CoA thioesterase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 29.901 28.545 2;3 4.8465E-05 13159 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.9 105.5 747330000 93091000 91848000 82570000 0 0 0 60167000 68996000 61533000 0 0 0 40573000 38450000 40850000 0 0 0 51354000 56412000 61488000 0 0 0 11277 1017 10974 212011;212012;212013;212014;212015;212016;212017;212018;212019;212020;212021;212022;212023;212024;212025;212026;212027;212028;212029;212030;212031;212032;212033;212034 130357;130358;130359;130360;130361;130362;130363;130364;130365;130366;130367;130368;130369;130370;130371;130372;130373;130374;130375;130376;130377;130378;130379 130373 23 KPISQGGLLK Unmodified 1039.639 0.63897988 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.23 14.126 2 2.2251E-06 4471 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 161.28 135.39 831760000 152140000 131810000 130620000 661640 816790 0 65998000 52037000 66649000 0 0 0 36019000 43370000 37519000 0 0 0 42749000 36190000 35189000 0 0 0 11278 218 10975 212035;212036;212037;212038;212039;212040;212041;212042;212043;212044;212045;212046;212047;212048 130380;130381;130382;130383;130384;130385;130386;130387;130388;130389;130390;130391 130387 12 KPITDLGVK Unmodified 969.58588 0.58588168 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.65 15.438 2 0.00015631 5147 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.13 54.364 18376000000 5628600000 5087700000 4393600000 4378900 4785000 4166200 540400000 560220000 533680000 0 0 0 0 0 240060000 0 0 0 496210000 428220000 453950000 0 0 0 11279 1217 10976 212049;212050;212051;212052;212053;212054;212055;212056;212057;212058;212059;212060;212061;212062 130392;130393;130394;130395;130396;130397;130398;130399;130400;130401;130402;130403;130404;130405 130394 14 KPLANELLFGSLVDGGQVTVALDK Unmodified 2483.3635 0.36353989 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.912 50.664 3 5.9653E-05 24603 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 68.231 68.014 156100000 25756000 23483000 21597000 0 0 0 14479000 11576000 11686000 0 0 0 8137900 7867000 8206100 0 0 0 8452800 7908500 6953600 0 0 0 11280 658 10977 212063;212064;212065;212066;212067;212068;212069;212070;212071;212072;212073;212074 130406;130407 130407 0 KPLANELLFGSLVDGGQVTVALDKEK Unmodified 2740.5011 0.501096 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 2 By matching By MS/MS 1 1 48.291 46.23 4 0.083604 18416 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 36.577 36.529 11155000 0 0 0 0 0 0 0 0 0 5158100 0 5997200 0 0 0 0 0 0 0 0 0 0 0 0 11281 658 10978 212075;212076 130408 130408 0 KPLDDVK Unmodified 813.45962 0.45961853 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 1 1 1 1 2 1 2 10.823 11.65 1;2 0.0026946 2893 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.39 84.917 2462500000 866460000 675830000 712930000 2299100 0 2305600 26605000 22922000 20511000 0 0 0 11111000 10858000 9715300 0 0 0 35814000 29193000 35918000 0 0 0 11282 1219 10979 212077;212078;212079;212080;212081;212082;212083;212084;212085;212086;212087;212088;212089;212090;212091;212092;212093;212094;212095 130409;130410;130411;130412 130410 3 KPLGIPAFLAIR Unmodified 1294.8125 0.81252757 1200 P22564 rihC Non-specific ribonucleoside hydrolase RihC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.74 41.096 2;3 3.4089E-05 19824 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.39 101.39 392150000 61829000 60621000 64740000 0 0 0 34186000 26586000 25884000 0 0 0 15250000 13832000 13915000 0 0 0 27620000 23761000 23925000 0 0 0 11283 1200 10980 212096;212097;212098;212099;212100;212101;212102;212103;212104;212105;212106;212107;212108;212109;212110;212111;212112;212113;212114;212115;212116;212117;212118;212119 130413;130414;130415;130416;130417;130418;130419;130420;130421;130422;130423;130424;130425;130426;130427 130423 15 KPLHQPK Unmodified 846.50757 0.50757178 799 P0ADQ2 yiiD Uncharacterized protein YiiD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 6.529 7.2615 2 0.0065068 1305 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 100.67 70.002 44831000 15309000 15853000 13670000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11284 799 10981 212120;212121;212122 130428;130429;130430 130430 3 KPLIISGTNAGSLEVIQAAANVAK Unmodified 2364.3377 0.33765949 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 2 1 1 44.305 42.586 2;3 3.6871E-51 20757 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 292.75 289.89 1597700000 51826000 65203000 59541000 23551000 20445000 24501000 130360000 90780000 101190000 66109000 71781000 62342000 110200000 92927000 102790000 0 0 0 127850000 151470000 133050000 41900000 33172000 36708000 11285 1427 10982 212123;212124;212125;212126;212127;212128;212129;212130;212131;212132;212133;212134;212135;212136;212137;212138;212139;212140;212141;212142;212143;212144;212145;212146;212147;212148;212149;212150;212151;212152;212153;212154;212155;212156;212157 130431;130432;130433;130434;130435;130436;130437;130438;130439;130440;130441;130442;130443;130444 130437 14 KPLWCGDTGPEVVQR Unmodified 1740.8617 0.86173896 959 P0AFP6 ybgI Putative GTP cyclohydrolase 1 type 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 26.547 25.357 2;3 1.8385E-35 11767 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 282.89 263.13 3128100000 516360000 461250000 411230000 3785400 3058600 3268800 259820000 252010000 268270000 4677700 2932900 3375000 151560000 157730000 137600000 0 0 0 162030000 158620000 168220000 1292600 0 996230 11286 959 10983 212158;212159;212160;212161;212162;212163;212164;212165;212166;212167;212168;212169;212170;212171;212172;212173;212174;212175;212176;212177;212178;212179;212180;212181;212182;212183;212184;212185;212186;212187;212188;212189;212190 130445;130446;130447;130448;130449;130450;130451;130452;130453;130454;130455;130456;130457;130458;130459;130460;130461;130462;130463;130464;130465;130466;130467;130468;130469;130470 130445 25 KPLYILATADEETSMAGAR Unmodified 2036.0248 0.024841127 1229 P23908 argE Acetylornithine deacetylase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.59 33.142 3 0.029634 16310 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 41.53 37.926 115280000 10892000 12599000 15877000 0 0 0 10986000 9940500 12264000 0 0 0 7966700 7189700 6451000 0 0 0 5990100 5580200 9547200 0 0 0 11287 1229 10984 212191;212192;212193;212194;212195;212196;212197;212198;212199;212200;212201;212202 130471 130471 0 KPMDPYVVEEDPGVK Unmodified 1701.8284 0.82837315 401 P0A867 talA Transaldolase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 3 3 1 1 1 2 3 2 3 3 3 24.159 23.198 2;3 2.6484E-11 10135 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.2 147.82 2748600000 557100000 500850000 440450000 0 0 722650 261000000 276530000 263510000 1134300 674980 1258400 59705000 68173000 66042000 0 0 0 84038000 78920000 88475000 0 0 0 11288 401 10985 212203;212204;212205;212206;212207;212208;212209;212210;212211;212212;212213;212214;212215;212216;212217;212218;212219;212220;212221;212222;212223;212224;212225;212226;212227;212228;212229;212230;212231;212232;212233;212234;212235;212236 130472;130473;130474;130475;130476;130477;130478;130479;130480;130481;130482;130483;130484;130485;130486;130487;130488;130489 130481 17 KPMFTLEER Unmodified 1149.5852 0.58522975 249 P0A6I6 coaD Phosphopantetheine adenylyltransferase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 2 1 21.405 21.681 2;3 0.024646 8594 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 46.819 33.782 213650000 0 14662000 0 0 0 0 0 7096800 10415000 0 0 0 0 0 0 0 0 0 77674000 94379000 9427000 0 0 0 11289 249 10986 212237;212238;212239;212240;212241;212242;212243;212244 130490;130491;130492 130492 1 KPMLWDADALNLLAINPDKR Unmodified 2293.2253 0.22527227 1381 P31806 nnr Bifunctional NAD(P)H-hydrate repair enzyme Nnr;ADP-dependent (S)-NAD(P)H-hydrate dehydratase;NAD(P)H-hydrate epimerase yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 49.606 48.185 4 1.6917E-05 23522 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 86.189 85.034 49371000 13778000 11473000 10645000 0 0 0 0 3299900 6373500 0 0 0 0 0 0 0 0 0 0 0 3801000 0 0 0 11290 1381 10987 212245;212246;212247;212248;212249;212250 130493 130493 1 KPMVLVILDGYGYR Unmodified 1622.8854 0.88543452 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 46.652 45.237 2;3 8.2086E-11 22565 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.65 157.69 1905800000 102610000 100390000 85347000 0 0 0 235120000 228990000 223610000 0 0 0 163150000 172710000 168890000 0 0 0 131490000 148810000 144710000 0 0 0 11291 1487 10988 212251;212252;212253;212254;212255;212256;212257;212258;212259;212260;212261;212262;212263;212264;212265;212266;212267;212268;212269;212270;212271;212272;212273;212274 130494;130495;130496;130497;130498;130499;130500;130501;130502;130503;130504;130505;130506;130507;130508;130509;130510;130511;130512;130513;130514 130495 21 KPMVLVILDGYGYREEQQDNAIFSAK Unmodified 2983.5113 0.51134311 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 2 2 2 1 2 48.145 46.774 3;4 2.7522E-10 23231 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.31 110.19 428460000 10215000 12564000 8934400 0 2778800 1394700 63293000 56576000 49956000 0 0 0 36538000 44790000 31567000 0 0 0 52375000 15947000 41532000 0 0 0 11292 1487 10989 212275;212276;212277;212278;212279;212280;212281;212282;212283;212284;212285;212286;212287;212288;212289;212290;212291;212292;212293;212294;212295;212296 130515;130516;130517;130518;130519;130520;130521;130522;130523;130524;130525;130526;130527;130528;130529;130530;130531;130532 130515 18 KPNACKDEQGR Unmodified 1301.6146 0.6146324 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 4.6998 5.5718 2;3 7.7612E-10 812 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 198.72 189.85 1284600000 166060000 153070000 144580000 0 288100 2281800 56371000 64891000 68397000 0 0 0 98533000 102430000 92412000 0 0 0 121550000 107360000 106350000 0 0 0 11293 788 10990 212297;212298;212299;212300;212301;212302;212303;212304;212305;212306;212307;212308;212309;212310;212311;212312;212313;212314;212315;212316;212317;212318;212319;212320;212321;212322;212323 130533;130534;130535;130536;130537;130538;130539;130540;130541;130542;130543;130544;130545;130546;130547;130548;130549;130550;130551;130552;130553;130554;130555;130556 130556 24 KPNPPIK Unmodified 792.48577 0.48577371 952 P0AFL3 ppiA Peptidyl-prolyl cis-trans isomerase A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.378 11.194 2 0.0012201 2546 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.92 100.7 465760000 28719000 32231000 25242000 0 0 0 56669000 49547000 54042000 0 0 0 33633000 28945000 38301000 0 0 0 44267000 40603000 33566000 0 0 0 11294 952 10991 212324;212325;212326;212327;212328;212329;212330;212331;212332;212333;212334;212335 130557;130558;130559 130557 3 KPNPPIKNEADNGLR Unmodified 1661.8849 0.88491725 952 P0AFL3 ppiA Peptidyl-prolyl cis-trans isomerase A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 1 2 2 2 2 11.874 12.723 2;3 6.5844E-12 3462 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.1 160.66 406400000 37070000 30889000 27251000 0 0 0 36103000 33470000 29994000 0 0 0 23772000 19481000 26090000 0 0 0 47146000 52571000 42567000 0 0 0 11295 952 10992 212336;212337;212338;212339;212340;212341;212342;212343;212344;212345;212346;212347;212348;212349;212350;212351;212352;212353 130560;130561;130562;130563;130564;130565;130566;130567;130568;130569;130570;130571;130572 130561 13 KPNSALR Unmodified 784.45554 0.45553621 367 P0A7S3 rpsL 30S ribosomal protein S12 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 7.1138 7.7427 2 0.0010639 1539 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.23 87.137 2703500000 379000000 361540000 394220000 31322000 19562000 21675000 183890000 141160000 0 49529000 49700000 46177000 109970000 112540000 123610000 44511000 35424000 28957000 160640000 148960000 131900000 39652000 41799000 47799000 11296 367 10993 212354;212355;212356;212357;212358;212359;212360;212361;212362;212363;212364;212365;212366;212367;212368;212369;212370;212371;212372;212373;212374;212375;212376;212377;212378;212379 130573;130574;130575;130576;130577;130578;130579;130580;130581;130582;130583;130584;130585;130586;130587;130588;130589;130590 130585 18 KPNYHADDIAAACDTLHEFDLPEHLVVDFSHGNCQK Unmodified 4162.8902 0.89016192 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 44.299 42.784 5;6 3.6338E-29 20960 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.73 169.56 529280000 81752000 70503000 70757000 0 0 0 38528000 35825000 33875000 0 0 0 27476000 22769000 20636000 0 0 0 46766000 46745000 33654000 0 0 0 11297 44 10994 212380;212381;212382;212383;212384;212385;212386;212387;212388;212389;212390;212391;212392;212393;212394;212395;212396;212397;212398;212399;212400;212401;212402;212403 130591;130592;130593 130592 3 KPQATVK Unmodified 770.46504 0.46503826 1072 P11557 damX Cell division protein DamX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.1349 7.6816 2 0.00044228 1737 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 156.4 117.38 207680000 0 0 0 2469600 2340600 2439100 22129000 20234000 19533000 8803500 7462300 6674200 15962000 0 0 930690 985720 597230 29853000 28012000 28740000 3727900 2960900 3823400 11298 1072 10995 212404;212405;212406;212407;212408;212409;212410;212411;212412;212413;212414;212415;212416;212417;212418;212419;212420;212421;212422 130594;130595;130596;130597;130598;130599;130600;130601;130602 130595 9 KPQDLFDEFAGK Unmodified 1393.6878 0.68778057 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 2 1 1 36.626 34.988 2;3 2.7082E-39 16023 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 306.48 282.45 3287600000 331750000 321230000 293320000 1807700 1740400 1907900 114000000 104970000 107320000 6902300 5774300 4221900 212920000 228170000 228080000 4276000 3043000 3251300 424200000 425350000 420300000 17832000 12537000 12728000 11299 937 10996 212423;212424;212425;212426;212427;212428;212429;212430;212431;212432;212433;212434;212435;212436;212437;212438;212439;212440;212441;212442;212443;212444;212445;212446;212447;212448;212449;212450;212451;212452;212453;212454;212455;212456;212457;212458;212459;212460;212461 130603;130604;130605;130606;130607;130608;130609;130610;130611;130612;130613;130614;130615;130616;130617;130618;130619;130620;130621;130622;130623;130624;130625;130626;130627;130628;130629;130630;130631 130630 28 KPQFVSPGQMGNIVDK Unmodified 1743.8978 0.89779012 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.511 26.364 2;3 3.435E-49 12317 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 335.79 323.58 4387400000 335310000 355010000 356180000 0 0 0 421590000 390320000 367490000 0 0 0 385670000 354920000 390190000 0 0 0 351270000 330310000 349110000 0 0 0 11300 299 10997 212462;212463;212464;212465;212466;212467;212468;212469;212470;212471;212472;212473;212474;212475;212476;212477;212478;212479;212480;212481;212482;212483;212484;212485 130632;130633;130634;130635;130636;130637;130638;130639;130640;130641;130642;130643;130644;130645;130646;130647;130648;130649;130650;130651;130652;130653;130654;130655 130635 24 KPRPTTPR Unmodified 951.5614 0.56139826 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 10.1 10.256 2 0.0040585 1792 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 114.78 110.85 28309000 0 0 0 0 0 0 0 0 0 8697300 9030700 10581000 0 0 0 0 0 0 0 0 0 0 0 0 11301 1576 10998 212486;212487;212488 130656;130657;130658 130658 3 KPSDADILVPGDTISLIGTTSLR Unmodified 2368.285 0.28495522 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.017 48.576 3 4.1783E-07 22643 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 107.79 102.79 904930000 5447300 5591000 5928600 0 0 0 134940000 118670000 135220000 5033000 6219900 3630300 94404000 111210000 106330000 0 0 0 53603000 58318000 60371000 0 0 0 11302 506 10999 212489;212490;212491;212492;212493;212494;212495;212496;212497;212498;212499;212500;212501;212502;212503 130659;130660;130661;130662;130663;130664;130665;130666;130667;130668;130669 130669 11 KPSFLITNPGSNQGPR Unmodified 1711.9006 0.90056731 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 2 2 2 2 2 1 1 2 2 2 1 1 22.282 21.886 2;3 1.8331E-74 9579 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 317.12 294.2 2851400000 31808000 32025000 34871000 0 0 0 407230000 456880000 411420000 0 0 0 217290000 263380000 191490000 0 1187300 1668700 262890000 267750000 269140000 0 1173200 1214000 11303 1437 11000 212504;212505;212506;212507;212508;212509;212510;212511;212512;212513;212514;212515;212516;212517;212518;212519;212520;212521;212522;212523;212524;212525;212526;212527;212528 130670;130671;130672;130673;130674;130675;130676;130677;130678;130679;130680;130681;130682;130683;130684;130685;130686;130687;130688;130689;130690;130691 130670 20 KPSNLFVHGYVTVNGAK Unmodified 1829.9788 0.97881763 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.657 21.729 3 0.15335 8849 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 17.241 13.4 63382000 4916900 5967800 5752500 0 0 0 7082500 4693000 5010700 0 0 0 4171700 3231200 4149200 0 0 0 5041000 6557100 6808600 0 0 0 11304 60 11001 212529;212530;212531;212532;212533;212534;212535;212536;212537;212538;212539;212540 130692 130692 1 KPTMLVTDLTLR Unmodified 1386.7905 0.7904715 1086 P13029 katG Catalase-peroxidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 33.627 32.188 2;3 5.1949E-07 15315 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.51 108.43 1511100000 177660000 180510000 136450000 0 0 0 138000000 163300000 197740000 0 0 0 86128000 77384000 74523000 0 0 0 80992000 107150000 91229000 0 0 0 11305 1086 11002 212541;212542;212543;212544;212545;212546;212547;212548;212549;212550;212551;212552;212553;212554;212555;212556;212557;212558;212559;212560;212561;212562;212563;212564 130693;130694;130695;130696;130697;130698;130699;130700;130701;130702;130703;130704;130705;130706;130707;130708;130709;130710;130711;130712;130713;130714;130715;130716 130706 24 KPVNDLSR Unmodified 927.51378 0.51377937 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.637 11.278 2 2.9888E-06 2503 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 186.09 156.75 2317600000 122480000 125820000 125820000 0 0 0 285290000 278430000 255700000 18563000 12272000 13635000 202170000 208220000 213520000 2649200 0 0 179530000 132940000 140580000 0 0 0 11306 539 11003 212565;212566;212567;212568;212569;212570;212571;212572;212573;212574;212575;212576;212577;212578;212579;212580 130717;130718;130719;130720;130721;130722;130723;130724;130725;130726;130727;130728 130726 12 KPVNSWTCEDFLAVDESFQPTAVGFAEALNNK Unmodified 3583.6929 0.69294889 884 P0AES9 hdeA Acid stress chaperone HdeA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 3 3 2 2 2 2 2 2 54.242 52.781 3;4 1.832E-25 25913 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 175.04 174.61 20216000000 3223900000 2670200000 2961000000 0 0 0 2867900000 2726900000 2734200000 0 0 0 730690000 722660000 617910000 0 0 0 360520000 304720000 295320000 0 0 0 11307 884 11004 212581;212582;212583;212584;212585;212586;212587;212588;212589;212590;212591;212592;212593;212594;212595;212596;212597;212598;212599;212600;212601;212602;212603;212604;212605;212606;212607;212608;212609 130729;130730;130731;130732;130733;130734;130735;130736;130737;130738;130739;130740;130741;130742;130743;130744;130745;130746;130747;130748;130749;130750;130751;130752 130735 24 KPVPVLNIGLPDFFIPQGTQEEMR Unmodified 2724.4309 0.43090795 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.322 52.894 3 1.8185E-06 25904 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 92.147 89.535 394560000 27431000 31952000 28440000 3110800 5620800 4560200 19956000 20764000 24479000 0 12100000 8964700 29356000 26136000 24714000 0 0 0 36912000 35005000 42864000 7583600 0 4608600 11308 1909 11005 212610;212611;212612;212613;212614;212615;212616;212617;212618;212619;212620;212621;212622;212623;212624;212625;212626;212627;212628 130753;130754;130755 130755 3 KPVVLQAHLDMVPQK Oxidation (M) 1717.9549 0.95491107 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1 1 19.077 19.565 3 0.00011104 7753 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 78.326 74.485 84942000 11868000 0 8097600 0 0 0 21521000 16986000 7653500 0 0 0 5769900 0 0 0 0 0 0 13046000 0 0 0 0 11309 1109 11006 212629;212630;212631;212632;212633;212634;212635;212636 130756;130757;130758;130759;130760 130757 493 5 KPVVLQAHLDMVPQK Unmodified 1701.96 0.95999645 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 2 1 1 1 3 3 2 1 1 1 2 3 3 2 2 2 1 1 24.24 23.26 2;3;4 9.7321E-15 9962 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 200.93 200.93 5324100000 622830000 515610000 521000000 2107700 2697800 2456400 592600000 688940000 552190000 2483300 2342800 2570400 234170000 278910000 376940000 0 0 0 301610000 334010000 288520000 0 1236700 901630 11310 1109 11006 212637;212638;212639;212640;212641;212642;212643;212644;212645;212646;212647;212648;212649;212650;212651;212652;212653;212654;212655;212656;212657;212658;212659;212660;212661;212662;212663;212664;212665;212666;212667;212668;212669;212670;212671;212672;212673 130761;130762;130763;130764;130765;130766;130767;130768;130769;130770;130771;130772;130773;130774;130775;130776;130777;130778;130779;130780;130781;130782;130783;130784;130785;130786 130779 25 KQAITNVESIR Unmodified 1257.7041 0.70409934 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.011 15.479 2 2.3224E-05 4302 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 137.95 123.66 94828000 0 0 0 0 0 0 20493000 0 0 9362500 9162400 10047000 8488700 7360300 8743000 1833500 0 0 4726000 5707300 4378800 1959500 1253700 1313300 11311 500 11007 212674;212675;212676;212677;212678;212679;212680;212681;212682;212683;212684;212685;212686;212687 130787;130788;130789 130789 3 KQALILNLPGQPK Unmodified 1418.8609 0.86093433 901 P0AF03 mog Molybdopterin adenylyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.283 28.027 2 0.022405 12331 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 54.608 49.509 51746000 5543200 6348500 4953700 0 0 0 6777500 4293000 3267500 0 0 0 3542200 2625700 2286700 0 0 0 4403100 4526400 3178800 0 0 0 11312 901 11008 212688;212689;212690;212691;212692;212693;212694;212695;212696;212697;212698;212699 130790;130791 130791 2 KQANLTPLLAILLHK Unmodified 1672.04 0.039961327 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 46.984 45.567 3;4 1.1206E-06 22257 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.83 109.83 426750000 61012000 53529000 54317000 0 0 0 53305000 45686000 40187000 0 0 834250 12710000 22823000 17609000 0 0 0 21844000 21904000 20987000 0 0 0 11313 1341 11009 212700;212701;212702;212703;212704;212705;212706;212707;212708;212709;212710;212711;212712;212713;212714;212715;212716;212717;212718;212719;212720;212721;212722;212723 130792;130793;130794;130795;130796;130797;130798;130799;130800;130801;130802;130803;130804;130805;130806;130807;130808;130809;130810;130811;130812;130813 130804 22 KQDIIFAILK Unmodified 1187.7278 0.72779489 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 40.454 38.594 2;3 3.6893E-05 18518 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.34 140.78 986830000 124880000 118360000 105500000 15501000 21908000 14618000 55859000 51010000 54805000 85284000 51243000 57038000 27327000 28403000 31195000 0 0 0 36600000 48773000 38883000 6410400 6963500 6266700 11314 982 11010 212724;212725;212726;212727;212728;212729;212730;212731;212732;212733;212734;212735;212736;212737;212738;212739;212740;212741;212742;212743;212744;212745;212746;212747;212748;212749;212750;212751;212752;212753;212754;212755;212756;212757;212758;212759;212760;212761;212762;212763;212764 130814;130815;130816;130817;130818;130819;130820;130821;130822;130823;130824;130825;130826;130827;130828;130829;130830;130831;130832;130833;130834;130835;130836;130837;130838;130839;130840;130841;130842;130843;130844;130845;130846;130847 130843 31 KQDLTSEEITNHIEAGK Unmodified 1911.9538 0.95378467 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 2 1 1 1 2 2 1 1 1 2 1 2 2 2 2 20.652 20.891 2;3;4 3.7078E-10 8225 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.23 141.65 493760000 26144000 27373000 71448000 0 0 0 20334000 29594000 19515000 4211000 0 0 32461000 31196000 32821000 9523900 6272100 6672400 52730000 40823000 44054000 11376000 13464000 13744000 11315 1445 11011 212765;212766;212767;212768;212769;212770;212771;212772;212773;212774;212775;212776;212777;212778;212779;212780;212781;212782;212783;212784;212785;212786;212787;212788;212789;212790;212791;212792;212793;212794 130848;130849;130850;130851;130852;130853;130854;130855;130856;130857;130858;130859;130860;130861;130862;130863 130859 16 KQDPDTLFFQR Unmodified 1393.699 0.69901396 1693 P64599 yhbT Uncharacterized protein YhbT yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 28.96 27.632 2 0.00024124 12711 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 123.86 110.9 44012000 0 0 0 0 0 0 2807200 3757000 3057000 0 0 0 3322200 2469500 5061300 0 0 0 7350400 7504900 8682800 0 0 0 11316 1693 11012 212795;212796;212797;212798;212799;212800;212801;212802;212803 130864 130864 1 KQEAILTWGNYQDLLPNSPVLWCYR Unmodified 3063.5277 0.52766188 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 54.365 52.903 3 1.4308E-30 25826 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.56 132.53 575240000 0 0 0 0 0 0 33287000 44305000 37149000 0 0 0 45611000 77421000 54461000 0 0 0 92881000 95598000 94525000 0 0 0 11317 1324 11013 212804;212805;212806;212807;212808;212809;212810;212811;212812 130865;130866;130867;130868;130869;130870 130869 6 KQEPYENVTLDVEEQHQGSVMQALGER Unmodified 3113.4724 0.47239143 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 1 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 35.934 34.404 3;4 3.6097E-94 16615 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 310.29 309.3 2723500000 184080000 236710000 181790000 2094000 3699800 3045400 188040000 204690000 189970000 5638700 0 3996800 240590000 276440000 221140000 3343700 3618800 3368600 254860000 274050000 231440000 2976100 2615500 5257800 11318 1388 11014 212813;212814;212815;212816;212817;212818;212819;212820;212821;212822;212823;212824;212825;212826;212827;212828;212829;212830;212831;212832;212833;212834;212835;212836;212837;212838;212839;212840;212841;212842;212843;212844;212845;212846;212847;212848 130871;130872;130873;130874;130875;130876;130877;130878;130879;130880;130881;130882;130883;130884;130885;130886;130887;130888;130889;130890;130891;130892;130893;130894;130895;130896;130897;130898;130899 130889 29 KQFNANFEK Unmodified 1124.5615 0.56145784 1938 P77754 spy Spheroplast protein Y yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 12.78 13.576 2 2.6468E-05 4013 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 156.46 86.457 84254000 11824000 18662000 15373000 0 0 0 13853000 0 0 0 0 0 0 0 8262900 0 0 0 7285100 8993500 0 0 0 0 11319 1938 11015 212849;212850;212851;212852;212853;212854;212855 130900 130900 1 KQGLFVYPSLTVTWDGSTTNPPK Unmodified 2535.3009 0.30093963 828 P0AE12 amn AMP nucleosidase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 46.389 44.865 3 1.94E-06 21932 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 92.01 91.546 358600000 42982000 37673000 31318000 0 0 0 32702000 31282000 27035000 0 0 0 22840000 0 0 0 0 0 45090000 45284000 42396000 0 0 0 11320 828 11016 212856;212857;212858;212859;212860;212861;212862;212863;212864;212865 130901;130902;130903;130904;130905;130906;130907;130908;130909 130904 9 KQIDEYGNFVK Unmodified 1339.6772 0.67721588 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 3 2 2 3 3 3 2 20.132 20.538 2;3 3.5538E-14 8365 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 211.86 197.08 2544900000 157530000 171840000 134220000 0 628550 0 257720000 204500000 207210000 0 0 0 247760000 192180000 198840000 0 0 0 260990000 265010000 246440000 0 0 0 11321 1189 11017 212866;212867;212868;212869;212870;212871;212872;212873;212874;212875;212876;212877;212878;212879;212880;212881;212882;212883;212884;212885;212886;212887;212888;212889;212890;212891;212892;212893;212894 130910;130911;130912;130913;130914;130915;130916;130917;130918;130919;130920;130921;130922;130923;130924;130925;130926;130927;130928;130929;130930;130931;130932 130910 21 KQILYLLGPVGGGK Unmodified 1441.8657 0.86568536 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 36.073 34.426 2;3 1.2492E-10 16403 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 198.25 193.78 384220000 62830000 72908000 65010000 1426600 1379700 1266300 50289000 40413000 44419000 1302100 0 1493300 8067400 7280500 7820600 0 0 0 6497300 3839100 7981400 0 0 0 11322 757 11018 212895;212896;212897;212898;212899;212900;212901;212902;212903;212904;212905;212906;212907;212908;212909;212910;212911;212912;212913;212914;212915;212916;212917;212918;212919;212920 130933;130934;130935;130936;130937;130938;130939;130940;130941;130942;130943;130944;130945 130943 13 KQISNLQQSISDAEQR Unmodified 1843.9388 0.93880331 11 CON__P04264 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 21.363 21.102 3 4.4419E-05 7062 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 83.37 79.199 17227000 0 0 0 0 0 1186600 0 0 0 6587500 7516400 0 0 0 0 0 0 0 0 0 0 0 0 1936300 + 11323 11 11019 212921;212922;212923;212924;212925 130946;130947;130948 130946 3 KQLDHGQK Unmodified 952.50903 0.50902834 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 1 1 1 6.2919 6.8836 2 6.7476E-05 755 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 170.3 138.36 817360000 28766000 25029000 25409000 13278000 10600000 10157000 0 0 0 43080000 28697000 28183000 65941000 76766000 51252000 9220600 7060800 4841800 117500000 109250000 98476000 19813000 23222000 20812000 11324 645 11020 212926;212927;212928;212929;212930;212931;212932;212933;212934;212935;212936;212937;212938;212939;212940;212941;212942;212943;212944;212945;212946;212947;212948;212949;212950;212951;212952;212953;212954;212955 130949;130950;130951;130952;130953;130954;130955;130956;130957;130958;130959;130960;130961;130962;130963;130964;130965;130966;130967;130968;130969;130970 130959 22 KQLEEAK Unmodified 844.46543 0.46543219 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 10.234 10.39 2 0.0012569 1804 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 139.14 72.709 79961000 0 0 0 0 0 0 0 0 0 16301000 11637000 10647000 0 0 0 13620000 0 7718800 0 0 0 5332100 6403500 8302500 11325 1576 11021 212956;212957;212958;212959;212960;212961;212962;212963 130971;130972;130973;130974 130973 4 KQLLEALR Unmodified 969.59712 0.59711507 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.351 19.613 2 0.0038265 6396 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 95.352 58.259 81949000 0 0 0 0 0 0 4854200 5808000 4821500 4705500 5635900 7334000 0 3965100 5766700 0 0 0 8865700 7543200 10072000 4861500 4198000 3517600 11326 1781 11022 212964;212965;212966;212967;212968;212969;212970;212971;212972;212973;212974;212975;212976;212977 130975 130975 1 KQLLEYDDVANDQR Unmodified 1705.8271 0.8271276 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 1 22.594 22.009 2;3 2.2891E-06 9353 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.53 129.4 256080000 15930000 13538000 14489000 0 0 0 24764000 20493000 19084000 6526700 6970100 0 14326000 16389000 14852000 0 4966600 0 25887000 26801000 25033000 0 0 6030100 11327 1057 11023 212978;212979;212980;212981;212982;212983;212984;212985;212986;212987;212988;212989;212990;212991;212992;212993;212994;212995;212996;212997;212998;212999;213000;213001;213002;213003;213004;213005 130976;130977;130978;130979;130980;130981;130982;130983;130984;130985;130986;130987;130988 130981 7 KQLLEYDDVANDQRR Unmodified 1861.9282 0.92823863 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 2 2 2 2 2 2 18.519 18.515 3;4 6.6491E-09 5286 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 147.18 147.18 164480000 0 0 0 1233300 0 1197900 0 0 0 33160000 26441000 20488000 0 0 0 13677000 19099000 19152000 0 0 0 12024000 7983600 10021000 11328 1057 11024 213006;213007;213008;213009;213010;213011;213012;213013;213014;213015;213016;213017;213018;213019;213020;213021;213022;213023;213024;213025 130989;130990;130991;130992;130993;130994;130995;130996;130997;130998;130999;131000;131001;131002 130989 14 KQLREELLAIAPVFGQK Unmodified 1939.1255 0.12548187 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 2 2 37.852 37.974 3;4 6.7268E-09 13893 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 122.75 117.54 171710000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50571000 59249000 61892000 0 0 0 0 0 0 11329 712 11025 213026;213027;213028;213029;213030;213031 131003;131004;131005;131006;131007 131003 5 KQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGR Unmodified 3505.7776 0.77762199 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 48.272 46.96 4 0.00036934 16724 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 62.393 60.304 28342000 0 4358800 6890800 3846100 4448100 4735400 0 0 0 0 0 0 0 0 0 0 0 0 4062400 0 0 0 0 0 11330 235 11026 213032;213033;213034;213035;213036;213037 131008;131009;131010 131010 3 KQLVLNLVSSPGSGK Unmodified 1525.8828 0.88279198 603 P0AAN3 hypB Hydrogenase isoenzymes nickel incorporation protein HypB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.908 25.726 3 0.13306 11743 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 28.664 27.732 110240000 0 2640300 4036000 0 0 0 14752000 17200000 10926000 1763000 1791000 2412500 8297300 8638400 8286100 894510 611480 0 8899000 9440400 9648400 0 0 0 11331 603 11027 213038;213039;213040;213041;213042;213043;213044;213045;213046;213047;213048;213049;213050;213051;213052;213053 131011 131011 0 KQMDVCADVCQQIAGGEK Unmodified 2035.9125 0.91253026 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 25.087 24.205 3 0.0010066 10867 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 40.501 40.4 49757000 12713000 10024000 10675000 0 0 0 0 0 0 0 0 0 0 3873500 0 0 0 0 0 8170000 4301500 0 0 0 11332 639 11028 213054;213055;213056;213057;213058;213059 131012 131012 1 KQPDPETLPPTL Unmodified 1334.7082 0.70818166 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1 2 1 2 1 1 2 1 1 1 1 1 1 1 32.565 30.995 2 0.0001208 14688 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 95.311 89.77 203590000 12520000 12496000 21494000 2858900 1886700 4012000 12558000 23789000 13347000 6520200 9520100 4500400 12278000 10779000 11462000 0 0 0 13835000 13782000 15954000 0 0 0 11333 1962 11029 213060;213061;213062;213063;213064;213065;213066;213067;213068;213069;213070;213071;213072;213073;213074;213075;213076;213077;213078;213079;213080;213081 131013;131014;131015;131016;131017;131018;131019;131020;131021;131022;131023;131024;131025;131026;131027;131028 131016 16 KQPLTLLYSAK Unmodified 1260.7442 0.74417324 1840 P76243 yeaO Uncharacterized protein YeaO yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 25.454 24.365 2;3 0.0061653 11322 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 65.719 60.779 231830000 29252000 28146000 24832000 0 0 0 30925000 26637000 29290000 0 0 0 10247000 8640600 9634100 0 0 0 12030000 11714000 10488000 0 0 0 11334 1840 11030 213082;213083;213084;213085;213086;213087;213088;213089;213090;213091;213092;213093;213094;213095;213096;213097;213098;213099;213100;213101;213102;213103;213104;213105 131029;131030 131029 1 KQQATWK Unmodified 888.48175 0.48175096 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 10.008 10.844 2 1.559E-05 2448 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 181.81 137.19 1127400000 167940000 136350000 110670000 0 0 0 0 0 0 0 0 0 66991000 68837000 55220000 0 0 0 170370000 169790000 181250000 0 0 0 11335 396 11031 213106;213107;213108;213109;213110;213111;213112;213113;213114 131031;131032;131033;131034;131035;131036;131037;131038;131039 131033 9 KQQNEEAAK Unmodified 1044.52 0.51998696 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 5.2352 5.9829 2 2.5595E-06 1425 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 177.7 129.14 368570000 34221000 38488000 26288000 7479900 10652000 12007000 602120 0 2154200 1342800 1348700 1570900 28736000 24624000 21539000 0 0 0 41545000 34178000 42196000 14277000 13696000 11623000 11336 133 11032 213115;213116;213117;213118;213119;213120;213121;213122;213123;213124;213125;213126;213127;213128;213129;213130;213131;213132;213133;213134;213135;213136;213137 131040;131041;131042;131043;131044;131045;131046;131047;131048;131049;131050;131051;131052;131053;131054;131055 131043 16 KQQNEEAAKR Unmodified 1200.6211 0.62109799 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 3 4 2 2 2 2 2 2 2 2 2 2 2 2 2 4 3 3 6.6068 7.1898 2;3 6.1824E-09 1451 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 157.66 130.99 1670900000 2769400 2552400 1785800 132250000 135380000 176490000 0 0 0 61499000 38539000 54976000 5873400 4406000 3938700 8010300 29943000 10753000 13616000 13737000 14633000 142870000 433320000 383590000 11337 133 11033 213138;213139;213140;213141;213142;213143;213144;213145;213146;213147;213148;213149;213150;213151;213152;213153;213154;213155;213156;213157;213158;213159;213160;213161;213162;213163;213164;213165;213166;213167;213168;213169;213170;213171;213172;213173;213174;213175;213176;213177;213178;213179;213180;213181;213182;213183 131056;131057;131058;131059;131060;131061;131062;131063;131064;131065;131066;131067;131068;131069;131070;131071;131072;131073;131074;131075;131076;131077;131078;131079;131080;131081 131070 25 KQQQPLASFQNEVQPSTR Unmodified 2085.0603 0.060315431 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 24.014 23.218 2;3 1.869E-22 10178 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.73 183.24 119500000 45471000 38719000 32205000 0 0 0 0 3103000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11338 49 11034 213184;213185;213186;213187;213188;213189;213190 131082;131083;131084;131085;131086 131082 5 KQQTVYGPLMEYIADNR Unmodified 2024.999 0.99896073 562 P0A9W6 ibaG Acid stress protein IbaG yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 42.593 40.956 3 4.3676E-05 19092 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 82.01 78.349 77409000 6480100 5132000 6307700 0 0 0 0 5825200 6401000 0 0 0 9601500 7999000 8128200 0 0 0 0 10826000 10709000 0 0 0 11339 562 11035 213191;213192;213193;213194;213195;213196;213197;213198;213199;213200 131087 131087 1 KQSVDAMLMTGDSYDCGK Unmodified 2004.8591 0.85909771 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 2 2 2 27.329 26.253 2;3 8.5759E-29 12315 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 236.17 216.28 742360000 47985000 46944000 42306000 0 0 0 61599000 49035000 63667000 0 0 0 70273000 57600000 56091000 0 712480 0 88743000 84422000 72979000 0 0 0 11340 583 11036 213201;213202;213203;213204;213205;213206;213207;213208;213209;213210;213211;213212;213213;213214;213215;213216;213217;213218;213219;213220;213221;213222;213223;213224 131088;131089;131090;131091;131092;131093;131094;131095;131096;131097;131098;131099;131100;131101 131088 14 KQSVDAMLMTGDSYDCGKK Unmodified 2132.9541 0.95406072 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 1 2 2 2 1 21.84 21.709 3;4 6.6164E-14 9171 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.97 138.41 452780000 33247000 27814000 25267000 949890 0 0 33002000 32528000 38600000 1064700 2832500 3904300 35950000 37564000 34967000 0 1082400 0 53629000 46524000 42177000 0 0 1675500 11341 583 11037 213225;213226;213227;213228;213229;213230;213231;213232;213233;213234;213235;213236;213237;213238;213239;213240;213241;213242;213243;213244;213245;213246;213247;213248;213249;213250;213251;213252;213253;213254;213255;213256 131102;131103;131104;131105;131106;131107;131108;131109;131110;131111 131102 10 KQTEDYITGR Unmodified 1209.599 0.59896556 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.737 13.361 3 0.0011018 3924 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.201 69.197 171350000 0 0 0 0 0 0 17487000 10227000 12837000 11806000 0 12681000 9881200 10170000 10942000 0 0 5625000 17977000 18194000 20469000 5993500 0 7055700 11342 594 11038 213257;213258;213259;213260;213261;213262;213263;213264;213265;213266;213267;213268;213269;213270 131112 131112 1 KQTEQALLK Unmodified 1057.6132 0.61315906 717 P0ACB7 hemY Protein HemY yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 2 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 1 11.978 12.711 2 0.072665 3449 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 51.749 30.777 3750000000 0 8076400 5281100 85814000 85320000 72374000 18846000 626080000 641920000 4559800 2484100 2583500 906890000 9256800 12047000 0 144280000 0 16774000 15825000 1085500000 1952100 1990800 2113600 11343 717 11039 213271;213272;213273;213274;213275;213276;213277;213278;213279;213280;213281;213282;213283;213284;213285;213286;213287;213288;213289;213290;213291;213292;213293;213294;213295;213296;213297;213298 131113;131114;131115;131116;131117;131118 131116 6 KQTGDLYAVLK Unmodified 1234.6921 0.69213767 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.339 22.473 2 0.00035771 8029 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 93.556 72.686 317680000 28257000 34192000 33209000 0 0 0 57931000 56887000 53203000 4670800 3982900 4226100 9526000 7518000 8524800 0 0 0 4416100 5675600 5458900 0 0 0 11344 1440 11040 213299;213300;213301;213302;213303;213304;213305;213306;213307;213308;213309;213310;213311;213312;213313 131119;131120;131121 131119 3 KQVAILAVAGAEK Unmodified 1296.7765 0.776536 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 22.161 21.932 2;3 1.0608E-05 8445 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.31 101.8 617200000 17651000 14603000 4800100 8410100 4302900 7471300 46523000 36806000 40834000 31731000 27601000 24579000 45970000 33475000 40764000 3203500 1569800 1511500 60730000 52339000 50428000 20643000 20534000 20725000 11345 642 11041 213314;213315;213316;213317;213318;213319;213320;213321;213322;213323;213324;213325;213326;213327;213328;213329;213330;213331;213332;213333;213334;213335;213336;213337;213338;213339;213340;213341;213342;213343;213344;213345;213346;213347;213348;213349;213350;213351;213352;213353;213354;213355;213356 131122;131123;131124;131125;131126;131127;131128;131129;131130;131131;131132;131133;131134;131135;131136;131137;131138;131139;131140;131141 131141 19 KQVEEAGDK Unmodified 1002.4982 0.49818889 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 4.4295 5.3176 2 0.00018548 839 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 131.11 97.555 301250000 0 0 0 0 0 0 48988000 51560000 47762000 0 0 0 23976000 21269000 22040000 0 0 0 31689000 24987000 28978000 0 0 0 11346 293 11042 213357;213358;213359;213360;213361;213362;213363;213364;213365 131142;131143;131144;131145;131146;131147 131144 6 KQVEEAGDKLPADDK Unmodified 1641.821 0.82097959 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 3 3 3 2 2 2 3 3 3 3 3 3 1 11.369 12.094 2;3;4 5.1233E-45 3102 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 311.21 287.35 6636800000 615600000 577480000 469380000 0 0 0 479040000 523040000 464960000 28503000 23949000 20598000 551900000 549440000 472820000 0 0 0 604190000 619460000 631950000 0 0 4529600 11347 293 11043 213366;213367;213368;213369;213370;213371;213372;213373;213374;213375;213376;213377;213378;213379;213380;213381;213382;213383;213384;213385;213386;213387;213388;213389;213390;213391;213392;213393;213394;213395;213396;213397;213398;213399;213400;213401;213402;213403;213404;213405;213406;213407;213408 131148;131149;131150;131151;131152;131153;131154;131155;131156;131157;131158;131159;131160;131161;131162;131163;131164;131165;131166;131167;131168;131169;131170;131171;131172;131173;131174;131175;131176;131177;131178;131179;131180;131181;131182;131183 131155 36 KQVSDGVAHIHASFNNTIVTITDR Unmodified 2622.3514 0.35141207 366 P0A7R9 rpsK 30S ribosomal protein S11 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 2 2 2 1 1 2 30.787 29.301 3;4 1.2322E-40 13644 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 211.68 205.31 1029400000 118570000 115820000 117550000 9514700 10563000 9772100 62458000 44426000 58383000 18803000 15647000 14621000 55021000 51411000 46390000 4294300 4565900 0 84059000 91524000 68859000 7240400 8444500 11439000 11348 366 11044 213409;213410;213411;213412;213413;213414;213415;213416;213417;213418;213419;213420;213421;213422;213423;213424;213425;213426;213427;213428;213429;213430;213431;213432;213433;213434;213435;213436;213437;213438;213439;213440;213441;213442;213443;213444;213445;213446;213447;213448;213449 131184;131185;131186;131187;131188;131189;131190;131191;131192;131193;131194;131195;131196;131197;131198;131199;131200;131201;131202;131203;131204;131205;131206;131207;131208;131209;131210;131211;131212;131213 131199 30 KQYEAQGFEVVIPK Unmodified 1634.8668 0.86680757 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.473 30.116 2;3 2.9008E-14 14002 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 212.9 188.05 840640000 82463000 74766000 72047000 0 0 0 66322000 70557000 78155000 0 0 0 52881000 56365000 52923000 0 0 0 76991000 76418000 80748000 0 0 0 11349 1132 11045 213450;213451;213452;213453;213454;213455;213456;213457;213458;213459;213460;213461;213462;213463;213464;213465;213466;213467;213468;213469;213470;213471;213472;213473 131214;131215;131216;131217;131218;131219;131220;131221;131222;131223;131224;131225;131226;131227;131228;131229;131230;131231;131232;131233 131227 20 KQYGEAFEK Unmodified 1098.5346 0.53457439 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.136 12.738 2 4.0112E-07 3494 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 196.88 162.07 2418600000 240790000 195230000 185140000 0 0 1883600 120850000 112770000 108310000 2214600 1216700 1718800 168920000 151370000 136870000 1181700 0 991740 326800000 328430000 314420000 6272000 6625300 6562600 11350 938 11046 213474;213475;213476;213477;213478;213479;213480;213481;213482;213483;213484;213485;213486;213487;213488;213489;213490;213491;213492;213493;213494 131234;131235;131236;131237;131238;131239;131240;131241;131242;131243;131244;131245;131246;131247;131248;131249;131250;131251 131243 18 KREDVHR Unmodified 938.50461 0.50461167 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 6.5248 7.0533 2 0.00049196 1446 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 172.14 151.86 166230000 19426000 18125000 15939000 1555100 1451200 1311100 0 0 0 6771200 6997800 5826200 6501900 7911100 4333700 6254500 4311300 1971500 17538000 15642000 14217000 3430100 3441000 3279700 11351 67 11047 213495;213496;213497;213498;213499;213500;213501;213502;213503;213504;213505;213506;213507;213508;213509;213510;213511;213512;213513;213514;213515;213516;213517 131252;131253;131254;131255;131256;131257;131258;131259;131260;131261;131262;131263;131264;131265;131266;131267;131268 131254 17 KREEQEQK Unmodified 1073.5465 0.54653606 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 3 2 2 2 2 2.8629 3.8082 2;3 0.0016314 612 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.52 117.36 97377000 21467000 14516000 15128000 291100 377940 415920 0 0 0 0 0 0 3599500 4054600 2879800 0 0 0 11811000 11146000 11689000 0 0 0 11352 530 11048 213518;213519;213520;213521;213522;213523;213524;213525;213526;213527;213528;213529;213530;213531;213532;213533;213534;213535;213536;213537;213538;213539;213540;213541;213542 131269;131270;131271;131272;131273;131274;131275;131276;131277;131278;131279 131275 11 KRPFYQVVVADSR Unmodified 1563.8522 0.85216056 369 P0A7T3 rpsP 30S ribosomal protein S16 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 3 2 2 3 2 3 3 3 3 2 2 2 2 1 2 2 2 3 3 2 20.257 20.453 2;3;4 2.6633E-24 7881 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 242.82 233.81 2762700000 231270000 503650000 636660000 22221000 22126000 4633800 54964000 52855000 41604000 59222000 62189000 56071000 365750000 51171000 43228000 27397000 19361000 16204000 113150000 101280000 100390000 63053000 61592000 52618000 11353 369 11049 213543;213544;213545;213546;213547;213548;213549;213550;213551;213552;213553;213554;213555;213556;213557;213558;213559;213560;213561;213562;213563;213564;213565;213566;213567;213568;213569;213570;213571;213572;213573;213574;213575;213576;213577;213578;213579;213580;213581;213582;213583;213584;213585;213586;213587;213588;213589;213590;213591;213592;213593;213594;213595;213596;213597;213598;213599;213600 131280;131281;131282;131283;131284;131285;131286;131287;131288;131289;131290;131291;131292;131293;131294;131295;131296;131297;131298;131299;131300;131301;131302;131303;131304;131305;131306;131307;131308;131309;131310;131311;131312;131313;131314;131315;131316;131317;131318;131319;131320;131321;131322;131323;131324;131325 131314 46 KRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCK Unmodified 4067.8928 0.89280446 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 51.648 50.448 5;6 2.9697E-37 23627 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 183.55 183.53 1269500000 79323000 80663000 69263000 0 0 0 120650000 38116000 94478000 10165000 21209000 24336000 78653000 103250000 93194000 5951200 6482700 8790200 137050000 140490000 123270000 11895000 9695000 12586000 11354 883 11050 213601;213602;213603;213604;213605;213606;213607;213608;213609;213610;213611;213612;213613;213614;213615;213616;213617;213618;213619;213620;213621;213622;213623;213624;213625;213626;213627;213628;213629;213630;213631;213632;213633;213634;213635;213636;213637 131326;131327;131328;131329;131330;131331;131332;131333;131334;131335;131336;131337;131338;131339;131340;131341;131342;131343;131344;131345;131346;131347 131345 22 KRPLLHVETPPR Unmodified 1441.8518 0.85176663 233 P0A6D7 aroK Shikimate kinase 1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 1 1 3 3 3 2 2 3 12.329 13.126 2;3;4 1.4783E-06 3893 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.03 114.14 1140400000 86545000 100300000 100790000 0 0 0 68261000 82769000 79316000 3966300 0 1934800 92197000 101020000 78656000 0 0 0 103010000 120650000 120950000 0 0 0 11355 233 11051 213638;213639;213640;213641;213642;213643;213644;213645;213646;213647;213648;213649;213650;213651;213652;213653;213654;213655;213656;213657;213658;213659;213660;213661;213662;213663;213664;213665;213666;213667;213668;213669 131348;131349;131350;131351;131352;131353;131354;131355;131356;131357;131358;131359;131360;131361;131362;131363;131364;131365;131366 131360 18 KSADDSVSAQEK Unmodified 1263.5943 0.59427411 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 2 6.6088 7.305 2;3 1.1675E-16 1142 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 207.47 186.95 314640000 23801000 26501000 23390000 0 0 0 17953000 18189000 21483000 0 0 0 38170000 33462000 38584000 0 17748000 10866000 22022000 13604000 8869400 0 0 0 11356 297 11052 213670;213671;213672;213673;213674;213675;213676;213677;213678;213679;213680;213681;213682;213683;213684;213685;213686;213687;213688;213689;213690;213691 131367;131368;131369;131370;131371;131372;131373;131374;131375;131376;131377;131378;131379;131380;131381 131381 14 KSADSTSTK Unmodified 923.45599 0.45598972 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2.6809 3.5762 2 0.0095616 448 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 66.692 44.561 8410700 0 0 0 0 0 0 0 0 0 0 0 0 818250 0 571340 0 0 0 2531500 2148700 2340900 0 0 0 11357 124 11053 213692;213693;213694;213695;213696 131382;131383;131384 131383 3 KSASSEQSQR Unmodified 1106.5316 0.53161428 1994 yes yes 0 0 1 By MS/MS 1 11.562 12.366 3 0.1035 3293 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 27.329 13.122 1411200 0 0 0 0 0 0 0 0 1411200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 11358 1994 11054 213697 131385 131385 0 KSATNSVLWFMGDDIPHVPNK Unmodified 2355.1682 0.16815132 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 43.179 41.479 4 0.0044626 20013 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 47.243 39.531 53405000 0 0 0 0 0 0 9324300 9724200 10717000 0 0 0 0 0 9922300 0 0 0 0 0 13717000 0 0 0 11359 1444 11055 213698;213699;213700;213701;213702 131386 131386 1 KSATNSVLWFMGDDIPHVPNKR Unmodified 2511.2693 0.26926235 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 1 2 2 2 1 2 2 2 1 37.586 35.937 3;4 6.4424E-10 17333 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.04 110.91 427210000 59025000 67275000 63337000 4003000 2386200 3598400 7295600 37179000 0 0 0 0 17326000 17582000 13364000 0 0 0 45342000 42895000 44189000 2409800 0 0 11360 1444 11056 213703;213704;213705;213706;213707;213708;213709;213710;213711;213712;213713;213714;213715;213716;213717;213718;213719;213720;213721;213722;213723;213724;213725;213726 131387;131388;131389;131390;131391;131392;131393 131392 7 KSDNPSITR Unmodified 1016.5251 0.52507234 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.35 11.104 2 7.6979E-16 2548 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 234.2 198.76 1336100000 106840000 103360000 98939000 0 431940 0 155340000 132950000 149990000 0 12935000 13675000 111020000 97738000 6156400 0 0 0 130250000 112260000 104260000 0 0 0 11361 244 11057 213727;213728;213729;213730;213731;213732;213733;213734;213735;213736;213737;213738;213739;213740;213741 131394;131395;131396;131397;131398 131396 5 KSDQNVR Unmodified 845.43553 0.43552905 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 4.5498 5.4301 2 0.001557 799 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 133.47 95.098 1524900000 204850000 207370000 205550000 1058900 1148300 0 0 0 0 0 0 0 116150000 120810000 93735000 0 0 0 194190000 183840000 196150000 0 0 0 11362 353 11058 213742;213743;213744;213745;213746;213747;213748;213749;213750;213751;213752 131399;131400;131401;131402;131403;131404;131405;131406;131407 131400 9 KSEPMLNDTESYFNTAIK Unmodified 2086.9881 0.98812127 83 P03841 malM Maltose operon periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 35.76 34.206 2;3 5.846E-29 16469 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 256.8 248.49 665480000 33467000 43036000 30353000 2133600 1307200 1865900 44386000 43597000 46675000 5155600 7555500 5306900 55198000 46217000 49159000 3367500 2016400 2295000 75261000 83334000 70541000 4662600 3713700 4878300 11363 83 11059 213753;213754;213755;213756;213757;213758;213759;213760;213761;213762;213763;213764;213765;213766;213767;213768;213769;213770;213771;213772;213773;213774;213775;213776;213777;213778;213779;213780;213781;213782;213783;213784;213785;213786;213787;213788 131408;131409;131410;131411;131412;131413;131414;131415;131416;131417;131418;131419;131420;131421;131422;131423;131424 131412 17 KSGDFDTFR Unmodified 1071.4985 0.49852324 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 1 1 1 1 2 2 2 16.048 16.33 2;3 0.00055234 4481 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 78.098 78.098 224880000 9806000 0 0 0 0 0 5658100 4227900 0 14233000 10567000 13803000 0 0 0 15231000 5382900 7347000 8274900 7450100 8806400 36185000 39299000 38609000 11364 935 11060 213789;213790;213791;213792;213793;213794;213795;213796;213797;213798;213799;213800;213801;213802;213803;213804;213805;213806;213807;213808;213809;213810 131425;131426;131427;131428;131429;131430;131431;131432;131433;131434;131435;131436 131435 12 KSGDFDTFRR Unmodified 1227.5996 0.59963426 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 2 2 2 1 2 2 2 13.017 13.335 2;3 1.6671E-16 3177 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 265.04 253.19 1871800000 0 23274000 23851000 0 481670 0 4066700 0 0 46804000 80475000 80702000 0 0 48647000 329320000 354480000 337070000 0 29047000 0 169440000 181330000 162850000 11365 935 11061 213811;213812;213813;213814;213815;213816;213817;213818;213819;213820;213821;213822;213823;213824;213825;213826;213827;213828;213829;213830;213831;213832;213833;213834 131437;131438;131439;131440;131441;131442;131443;131444;131445;131446;131447;131448;131449;131450;131451;131452;131453 131437 17 KSGIGGADGK Unmodified 888.46649 0.46649483 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 5.4805 6.3291 2 0.00048506 1507 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.4 57.838 955130000 223700000 232930000 221550000 0 0 0 33564000 42455000 40708000 0 0 0 29920000 0 29594000 0 0 0 49524000 51175000 0 0 0 0 11366 1264 11062 213835;213836;213837;213838;213839;213840;213841;213842;213843;213844 131454;131455;131456 131455 3 KSGTEPLIR Unmodified 999.57129 0.57129425 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.999 12.832 2 0.00049342 3621 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 111.39 80.83 474470000 42255000 34812000 30487000 0 0 0 40823000 40211000 48223000 0 0 0 31072000 32604000 40087000 0 0 0 51711000 45624000 36560000 0 0 0 11367 1360 11063 213845;213846;213847;213848;213849;213850;213851;213852;213853;213854;213855;213856 131457;131458;131459;131460;131461;131462;131463;131464;131465;131466 131460 10 KSGVLTGLPDAYGR Unmodified 1432.7674 0.76742787 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 2 1 1 2 2 2 2 2 2 1 1 1 1 2 2 2 26.548 25.268 2;3 2.0239E-45 10810 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 289.89 273.63 5114000000 88923000 76860000 82840000 6767500 5551700 6087000 1234100000 375400000 381820000 15548000 14517000 11391000 774550000 769920000 770600000 0 0 532350 169140000 144140000 163500000 8091800 6616400 7189700 11368 212 11064 213857;213858;213859;213860;213861;213862;213863;213864;213865;213866;213867;213868;213869;213870;213871;213872;213873;213874;213875;213876;213877;213878;213879;213880;213881;213882;213883;213884;213885;213886;213887;213888;213889;213890;213891 131467;131468;131469;131470;131471;131472;131473;131474;131475;131476;131477;131478;131479;131480;131481;131482;131483;131484 131481 18 KSIGTLSAFEQNALEGMLDTLK Unmodified 2365.2199 0.21991212 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.335 52.887 3 1.044E-21 26080 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 161.2 126.19 882270000 145470000 146430000 132840000 0 0 0 64180000 45555000 35430000 0 0 0 33985000 32539000 36439000 0 0 0 66635000 71366000 71396000 0 0 0 11369 1642 11065 213892;213893;213894;213895;213896;213897;213898;213899;213900;213901;213902;213903 131485;131486;131487;131488;131489;131490;131491;131492 131489 8 KSIGTLSAFEQNALEGMLDTLKK Unmodified 2493.3149 0.31487514 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 51.633 50.378 3;4 9.7015E-22 24354 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 164.19 163.23 1466200000 241640000 260850000 245250000 9701700 10588000 8872800 78276000 85170000 88450000 0 0 0 58174000 52772000 35394000 0 0 0 91033000 91305000 106630000 2060100 0 0 11370 1642 11066 213904;213905;213906;213907;213908;213909;213910;213911;213912;213913;213914;213915;213916;213917;213918;213919;213920;213921;213922;213923;213924;213925;213926;213927;213928;213929;213930;213931;213932;213933;213934 131493;131494;131495;131496;131497;131498;131499;131500;131501;131502;131503;131504;131505;131506;131507;131508;131509;131510;131511;131512;131513 131501 21 KSLTEIK Unmodified 817.49092 0.49091866 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 11.681 11.984 2 0.00046703 2586 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 155.88 22.935 231110000 0 0 0 0 0 0 10007000 0 0 0 0 45608000 0 0 0 175490000 0 0 0 0 0 0 0 0 11371 383 11067 213935;213936;213937 131514;131515 131514 2 KSLTEIKDVLASR Unmodified 1458.8406 0.84059282 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 23.636 22.939 4 1.9619E-05 7238 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 98.592 90.982 1007200000 0 0 0 0 0 0 0 0 0 51947000 0 0 0 0 0 136610000 311310000 294730000 0 0 0 69349000 76133000 67170000 11372 383 11068 213938;213939;213940;213941;213942;213943;213944 131516;131517;131518;131519;131520;131521 131516 6 KSTAESIVYSALETLAQR Unmodified 1966.0371 0.037120373 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 2 1 2 1 2 2 2 1 1 1 1 2 52.911 51.546 2;3 7.7543E-81 25053 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 331.73 321.54 1298800000 262910000 230210000 191260000 11089000 8639400 10341000 65558000 69761000 54116000 28291000 2168000 32368000 12533000 56846000 63800000 0 0 0 117390000 16797000 21413000 13721000 14614000 14993000 11373 67 11069 213945;213946;213947;213948;213949;213950;213951;213952;213953;213954;213955;213956;213957;213958;213959;213960;213961;213962;213963;213964;213965;213966;213967;213968;213969;213970;213971;213972;213973;213974;213975;213976;213977 131522;131523;131524;131525;131526;131527;131528;131529;131530;131531;131532;131533;131534;131535;131536;131537;131538;131539;131540;131541;131542;131543;131544;131545 131542 22 KSTFLLDSLGK Unmodified 1207.6812 0.68123863 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 2 2 2 2 2 2 30.897 29.488 2;3 0.0040835 14200 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 63.944 57.552 195870000 22219000 11386000 17646000 0 0 0 21844000 17733000 19286000 0 738530 0 17008000 10728000 8746900 0 0 0 17086000 16961000 14487000 0 0 0 11374 948 11070 213978;213979;213980;213981;213982;213983;213984;213985;213986;213987;213988;213989;213990;213991;213992;213993;213994;213995;213996;213997;213998;213999;214000;214001 131546;131547;131548;131549;131550;131551;131552;131553;131554;131555 131547 10 KSTPFAAQVAAER Unmodified 1374.7256 0.72556306 366 P0A7R9 rpsK 30S ribosomal protein S11 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 16.699 17.197 2;3 5.3756E-06 4638 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 116.98 109.26 1215600000 162880000 147410000 140020000 17670000 11038000 9543900 51928000 48740000 45380000 42441000 32460000 17016000 51050000 41687000 39076000 21340000 18380000 17443000 82889000 101800000 90017000 6032000 9117600 10212000 11375 366 11071 214002;214003;214004;214005;214006;214007;214008;214009;214010;214011;214012;214013;214014;214015;214016;214017;214018;214019;214020;214021;214022;214023;214024;214025;214026;214027;214028;214029;214030;214031;214032;214033;214034;214035;214036;214037;214038;214039;214040;214041;214042;214043;214044;214045 131556;131557;131558;131559;131560;131561;131562;131563;131564;131565;131566;131567;131568;131569;131570;131571;131572;131573;131574;131575;131576;131577 131558 22 KSVAGFK Unmodified 735.42792 0.42792448 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.798 11.387 2 0.019917 2079 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 81.297 46.191 1212600000 101750000 104020000 122360000 28174000 25859000 23414000 45968000 43681000 36880000 63187000 44247000 33377000 49825000 811920 380910 32930000 39375000 41377000 95056000 88956000 76778000 41292000 38308000 34579000 11376 1644 11072 214046;214047;214048;214049;214050;214051;214052;214053;214054;214055;214056;214057;214058;214059;214060;214061;214062;214063;214064;214065;214066;214067;214068;214069 131578;131579;131580;131581;131582 131579 5 KSVALSGVPAGNTALCTVGK Unmodified 1929.0353 0.035346234 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 26.525 25.521 3 1.6506E-14 11357 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.89 125.37 312750000 116420000 102830000 92366000 1136900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11377 1374 11073 214070;214071;214072;214073 131583;131584;131585 131585 3 KSWAAGDATSR Unmodified 1148.5574 0.5574351 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 11.5 12.199 3 0.09549 3215 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 31.989 21.44 86147000 32553000 27077000 26517000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11378 1888 11074 214074;214075;214076 131586;131587 131587 2 KSWPGVQSFAGR Unmodified 1318.6782 0.67821894 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 23.552 22.906 2;3 0.12583 9918 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 22.055 19.562 64168000 12028000 13928000 8652100 0 0 0 0 4407200 3937600 0 0 0 2125600 3109000 2363400 1023600 0 0 5582400 3155900 3855800 0 0 0 11379 1788 11075 214077;214078;214079;214080;214081;214082;214083;214084;214085;214086;214087;214088;214089;214090;214091 131588;131589 131588 1 KTAALVMNIDDMSK Unmodified 1535.7687 0.76874978 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.017 27.694 2 9.315E-08 12273 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 137.68 130.55 82018000 6598600 6168900 5766100 0 840410 852560 5642400 5698400 5571800 1957700 0 0 6223300 5649000 5171800 934750 0 0 7586400 4631600 7868800 0 2484700 2371300 11380 1185 11076 214092;214093;214094;214095;214096;214097;214098;214099;214100;214101;214102;214103;214104;214105;214106;214107;214108;214109 131590;131591 131591 2 KTAEDYLGEPVTEAVITVPAYFNDAQR Unmodified 2996.4767 0.47673175 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.841 50.759 3 4.6097E-11 18356 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 125.83 125.36 819950000 134420000 130300000 116380000 15018000 10894000 11409000 0 0 0 42188000 39921000 41445000 63885000 0 0 4958900 5879900 5507800 0 0 166580000 9703100 10217000 11242000 11381 293 11077 214110;214111;214112;214113;214114;214115;214116;214117;214118;214119;214120;214121;214122;214123;214124;214125;214126 131592;131593;131594;131595;131596;131597;131598;131599;131600 131596 9 KTAICGTDVHIYNWDEWSQK Unmodified 2450.1325 0.1324941 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.302 33.813 3 4.3776E-07 16062 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 100.94 93.321 209090000 20737000 20916000 18605000 0 0 0 20805000 15974000 14795000 0 0 0 10061000 11456000 10816000 0 0 0 21497000 20900000 22529000 0 0 0 11382 172 11078 214127;214128;214129;214130;214131;214132;214133;214134;214135;214136;214137;214138 131601;131602 131602 2 KTAIKPWLMDNK Oxidation (M) 1459.7857 0.78572048 112 P05523 mutM Formamidopyrimidine-DNA glycosylase yes yes 0 1 2 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 17.565 18.273 2 0.0059027 6793 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 71.451 56.3 155980000 15534000 17647000 15585000 0 0 0 0 4656000 14847000 0 0 0 13044000 3194100 15783000 0 0 0 17973000 18186000 19531000 0 0 0 11383 112 11079 214139;214140;214141;214142;214143;214144;214145;214146;214147;214148;214149 131603;131604 131603 36 2 KTANVVLNTAFGWPTIAVDTHIFR Unmodified 2670.4282 0.42820583 637 P0AB83 nth Endonuclease III yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 49.796 49.851 4 0.070437 18257 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 34.817 32.376 14750000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6759500 4863100 3127300 0 0 0 0 0 0 11384 637 11080 214150;214151;214152 131605 131605 0 KTAVGQTIQIGSGITK Unmodified 1600.9148 0.91482039 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 2 22.05 21.852 2;3 1.2354E-23 9011 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 246.96 239.83 390730000 27041000 27577000 28220000 6006300 4728300 3600100 25477000 30668000 29042000 14295000 15314000 16041000 21159000 18981000 17477000 2033400 2434600 1861300 30115000 26649000 29788000 4830000 3219100 4174800 11385 502 11081 214153;214154;214155;214156;214157;214158;214159;214160;214161;214162;214163;214164;214165;214166;214167;214168;214169;214170;214171;214172;214173;214174;214175;214176;214177;214178;214179;214180;214181;214182;214183;214184;214185;214186;214187;214188;214189;214190;214191;214192;214193;214194;214195;214196 131606;131607;131608;131609;131610;131611;131612;131613;131614;131615;131616;131617;131618;131619;131620;131621;131622;131623;131624;131625;131626;131627;131628;131629;131630;131631;131632;131633 131617 28 KTDLNVDPWINK Unmodified 1441.7565 0.75652884 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 30.029 28.172 2;3 6.2325E-17 13356 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 216.03 188.73 524100000 0 0 0 2555400 1367900 2546700 101050000 263840000 101180000 18270000 17874000 15412000 0 0 0 0 0 0 0 0 0 0 0 0 11386 522 11082 214197;214198;214199;214200;214201;214202;214203;214204;214205;214206;214207;214208;214209;214210;214211;214212;214213 131634;131635;131636;131637;131638;131639;131640;131641;131642;131643;131644 131641 11 KTDLVIAGEAAGSK Unmodified 1358.7405 0.74054442 1102 P15042 ligA DNA ligase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 16.924 17.483 2;3 4.0278E-08 6483 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.39 152.31 219910000 12798000 16432000 7041000 0 0 0 26017000 26263000 22799000 0 0 0 7716900 7379100 6893700 6256200 4501800 4056800 26326000 24942000 20490000 0 0 0 11387 1102 11083 214214;214215;214216;214217;214218;214219;214220;214221;214222;214223;214224;214225;214226;214227;214228;214229;214230;214231;214232;214233;214234;214235;214236;214237;214238;214239 131645;131646;131647;131648;131649;131650;131651;131652;131653;131654;131655;131656 131648 12 KTDPGPAFDWAR Unmodified 1359.6571 0.65714914 1084 P13016 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.517 26.37 3 0.0017395 12027 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.157 43.215 66678000 6265200 5764600 6461400 0 0 0 4464100 7546900 8560300 0 0 0 2778500 3151500 4002900 0 0 0 4915300 7828200 4939100 0 0 0 11388 1084 11084 214240;214241;214242;214243;214244;214245;214246;214247;214248;214249;214250;214251 131657;131658 131658 1 KTFQEILAALGTGDALASK Unmodified 1933.052 0.052042156 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 51.756 50.55 2;3 1.438E-22 24539 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 236.75 234.22 1215800000 97701000 104070000 105930000 1503200 1427600 1578800 120330000 94990000 106580000 2546300 2925800 2599800 90109000 89413000 81626000 2778900 0 2022700 103280000 95314000 106240000 0 1423100 1451500 11389 1903 11085 214252;214253;214254;214255;214256;214257;214258;214259;214260;214261;214262;214263;214264;214265;214266;214267;214268;214269;214270;214271;214272;214273;214274;214275;214276;214277;214278;214279;214280;214281;214282;214283;214284;214285 131659;131660;131661;131662;131663;131664;131665;131666;131667;131668;131669;131670;131671;131672;131673;131674 131670 16 KTGCLVCLDSCPVGIVSNATYTYGAVEK Unmodified 3061.4559 0.45587842 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 43.899 42.229 3 4.073E-16 17215 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 145.34 144.71 107070000 0 0 0 0 0 0 13751000 11573000 10980000 10500000 11710000 4845200 9257200 5377800 7205800 2957700 0 0 7351300 6069500 5496900 0 0 0 11390 1836 11086 214286;214287;214288;214289;214290;214291;214292;214293;214294;214295;214296;214297;214298 131675;131676;131677;131678;131679 131675 5 KTGKPDYVTDSAASATAWSTGVK Unmodified 2340.1598 0.1597547 38 P00634 phoA Alkaline phosphatase yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 3 2 24.627 23.574 2;3;4 2.9766E-15 10533 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 140.67 140.03 479570000 0 0 0 0 0 0 44130000 55412000 36568000 0 0 0 58795000 51977000 47613000 0 0 0 62569000 61773000 60738000 0 0 0 11391 38 11087 214299;214300;214301;214302;214303;214304;214305;214306;214307;214308;214309;214310;214311;214312;214313;214314;214315;214316;214317;214318 131680;131681;131682;131683;131684;131685;131686;131687;131688;131689;131690;131691 131683 12 KTGNTPDGR Unmodified 944.46756 0.46755746 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 1 1 1 1 1 4.7003 5.5539 2 8.7224E-06 784 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 170.95 137.59 2802100000 150800000 159950000 110410000 0 0 0 232950000 322610000 329630000 0 0 0 312250000 306910000 245980000 0 0 0 222550000 206490000 201550000 0 0 0 11392 212 11088 214319;214320;214321;214322;214323;214324;214325;214326;214327;214328;214329;214330;214331;214332 131692;131693;131694;131695;131696;131697;131698;131699;131700;131701;131702;131703 131692 12 KTGVLDQVLDALK Unmodified 1398.8082 0.80823006 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.931 44.466 2;3 2.0056E-05 20873 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.69 59.389 823780000 47928000 54840000 47647000 0 0 0 73280000 91455000 68971000 0 0 0 82537000 88894000 76280000 0 0 0 67433000 66487000 58030000 0 0 0 11393 1959 11089 214333;214334;214335;214336;214337;214338;214339;214340;214341;214342;214343;214344;214345;214346;214347;214348;214349;214350;214351;214352;214353;214354;214355;214356 131704;131705;131706;131707;131708;131709;131710;131711;131712;131713;131714;131715;131716;131717 131713 11 KTHNQGVFDVYTPDILR Unmodified 2002.0272 0.027224389 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 1 3 3 3 1 1 1 4 4 4 1 1 4 4 4 1 1 35.582 34.033 2;3;4 2.3249E-50 16717 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 290.71 281.42 3626600000 72601000 56522000 48166000 1174900 1131700 1423000 579950000 523640000 552470000 2271300 2826400 2543900 346280000 322810000 315780000 0 887240 700020 241100000 247670000 303210000 1978700 1450400 0 11394 212 11090 214357;214358;214359;214360;214361;214362;214363;214364;214365;214366;214367;214368;214369;214370;214371;214372;214373;214374;214375;214376;214377;214378;214379;214380;214381;214382;214383;214384;214385;214386;214387;214388;214389;214390;214391;214392;214393;214394;214395;214396;214397;214398;214399;214400;214401;214402;214403;214404;214405;214406;214407;214408 131718;131719;131720;131721;131722;131723;131724;131725;131726;131727;131728;131729;131730;131731;131732;131733;131734;131735;131736;131737;131738;131739;131740 131722 20 KTLAQAATHYKK Unmodified 1358.767 0.76703394 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 2 By MS/MS By MS/MS 1 1 10.237 11.316 3 0.021336 1975 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 47.774 43.228 16622000 0 0 0 9320300 7301400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11395 151 11091 214409;214410 131741;131742 131741 2 KTLGLTGEEK Unmodified 1074.5921 0.59208927 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.123 12.921 2 1.2545E-06 3696 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 192.12 173.39 406130000 93580000 108430000 112700000 0 0 0 22084000 18705000 17544000 0 0 0 0 0 5079600 0 0 0 8622700 9101900 10281000 0 0 0 11396 1254 11092 214411;214412;214413;214414;214415;214416;214417;214418;214419;214420 131743;131744;131745;131746;131747 131746 5 KTLLTQVAPPGVTAHVVDVAK Unmodified 2143.2365 0.23648888 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 32.274 30.893 3;4 2.3261E-10 14621 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 120.64 120.64 1287600000 27363000 22090000 26741000 4937800 7154300 2336500 131960000 119180000 118980000 70547000 93989000 77883000 52107000 51732000 48935000 75844000 61855000 75615000 58444000 51502000 65868000 18960000 10249000 13334000 11397 1745 11093 214421;214422;214423;214424;214425;214426;214427;214428;214429;214430;214431;214432;214433;214434;214435;214436;214437;214438;214439;214440;214441;214442;214443;214444;214445;214446;214447;214448;214449;214450;214451;214452;214453;214454;214455;214456;214457;214458;214459;214460;214461;214462;214463;214464;214465;214466 131748;131749;131750;131751;131752;131753;131754;131755;131756;131757;131758;131759;131760;131761;131762;131763;131764;131765;131766;131767;131768;131769;131770;131771;131772;131773 131768 26 KTLLVTTGSEAVENAVK Unmodified 1758.9727 0.9727292 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 1 2 1 2 27.931 26.684 2;3 3.7981E-14 12186 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.95 201.06 562940000 156570000 116740000 102150000 0 0 834130 37692000 37298000 36333000 2238200 0 0 4902500 5753800 4501400 0 0 0 23706000 13739000 20481000 0 0 0 11398 1194 11094 214467;214468;214469;214470;214471;214472;214473;214474;214475;214476;214477;214478;214479;214480;214481;214482;214483;214484;214485;214486;214487;214488 131774;131775;131776;131777;131778;131779;131780;131781;131782;131783 131781 9 KTMGKPPVDDDIPAEEQVR Unmodified 2124.0521 0.05211851 1394 P32662 gph Phosphoglycolate phosphatase yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 18.706 19.268 3 0.0036263 6859 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 56.017 51.896 76743000 5617000 0 7207500 0 0 0 6435100 4354000 6289900 0 0 0 10701000 6556200 7075200 0 0 0 6911600 8296900 7298600 0 0 0 11399 1394 11095 214489;214490;214491;214492;214493;214494;214495;214496;214497;214498;214499 131784;131785;131786 131786 2 KTNDTLAVTGEAFSR Unmodified 1608.8107 0.81074925 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 1 2 2 2 2 2 23.635 22.88 2;3 2.9673E-56 10154 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 360.11 335.65 998690000 56142000 159780000 44116000 0 0 0 110910000 108430000 105120000 0 0 0 18152000 77844000 73043000 0 0 0 66083000 94371000 84712000 0 0 0 11400 874 11096 214500;214501;214502;214503;214504;214505;214506;214507;214508;214509;214510;214511;214512;214513;214514;214515;214516;214517;214518;214519;214520 131787;131788;131789;131790;131791;131792;131793;131794;131795;131796 131789 10 KTNLAGLMDGYFHHEASIEGGQHLNVNVMNR Unmodified 3451.6514 0.65137562 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 2 1 1 4 3 3 2 1 1 4 4 3 4 3 3 1 1 1 38.842 37.047 3;4;5 4.0716E-55 17810 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 242.41 240.54 3135000000 118520000 85750000 96327000 3651100 0 3437200 518990000 416380000 359650000 14932000 10294000 2216500 278910000 202210000 262380000 0 0 0 316160000 248440000 184480000 4330200 7059300 859480 11401 212 11097 214521;214522;214523;214524;214525;214526;214527;214528;214529;214530;214531;214532;214533;214534;214535;214536;214537;214538;214539;214540;214541;214542;214543;214544;214545;214546;214547;214548;214549;214550;214551;214552;214553;214554;214555;214556;214557;214558;214559;214560;214561;214562;214563;214564;214565;214566;214567 131797;131798;131799;131800;131801;131802;131803;131804;131805;131806;131807;131808;131809;131810;131811;131812;131813;131814;131815;131816;131817;131818;131819;131820;131821;131822;131823;131824;131825 131809 27 KTPGFGPR Unmodified 858.47119 0.47118627 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.827 12.434 2 0.0024154 2484 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 104.76 89.325 352800000 22730000 21086000 18020000 9686400 8341500 5645200 24255000 24024000 19224000 9758700 10463000 8193000 14571000 16262000 10774000 4157300 2442700 2276400 31561000 31566000 31203000 9389200 8604400 8565400 11402 1094 11098 214568;214569;214570;214571;214572;214573;214574;214575;214576;214577;214578;214579;214580;214581;214582;214583;214584;214585;214586;214587;214588;214589;214590;214591 131826;131827;131828 131827 3 KTPGGAPSTSEEVLEELALDYPLPK Unmodified 2640.3534 0.35342871 37 P00582 polA DNA polymerase I yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.057 50.93 3 0.0023217 19636 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 54.658 52.009 82739000 8045100 6112500 5624600 0 0 0 8495900 0 7710000 0 0 0 6035900 6800500 6161200 3268600 0 0 7724500 7385800 9373900 0 0 0 11403 37 11099 214592;214593;214594;214595;214596;214597;214598;214599;214600;214601;214602;214603 131829 131829 1 KTPQQALDTAVER Unmodified 1455.7682 0.76815616 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 16.84 17.608 2;3 7.8328E-11 6273 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.95 143.71 4735400000 0 0 0 0 0 0 465750000 702740000 654950000 0 0 0 380110000 336660000 121050000 0 0 0 731170000 704660000 638320000 0 0 0 11404 993 11100 214604;214605;214606;214607;214608;214609;214610;214611;214612;214613;214614;214615;214616;214617;214618;214619;214620;214621;214622 131830;131831;131832;131833;131834;131835;131836;131837;131838;131839;131840;131841 131835 12 KTSELAQSLSSWPK Unmodified 1560.8148 0.814772 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 29.45 27.449 2 2.4655E-26 13021 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 233.59 207.54 41582000 0 0 0 0 0 0 14947000 13709000 9883900 1710900 1331700 0 0 0 0 0 0 0 0 0 0 0 0 0 11405 722 11101 214623;214624;214625;214626;214627 131842;131843 131842 2 KTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFR Unmodified 3805.8985 0.89852499 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 45.385 43.9 4;5 7.1233E-44 20499 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 214 212.51 1849800000 138730000 117760000 108970000 0 0 0 151680000 204820000 159250000 0 3377900 0 153620000 121070000 118970000 0 0 0 174690000 203530000 193370000 0 0 0 11406 674 11102 214628;214629;214630;214631;214632;214633;214634;214635;214636;214637;214638;214639;214640;214641;214642;214643;214644;214645;214646;214647;214648;214649;214650;214651;214652;214653 131844;131845;131846;131847;131848;131849;131850;131851;131852;131853;131854;131855;131856;131857;131858;131859;131860;131861;131862;131863 131860 20 KTVEWYLSNTK Unmodified 1367.7085 0.70851601 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 23.311 22.686 2 7.5522E-15 9808 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 189.17 178.46 21514000 0 0 0 0 0 0 0 0 0 0 0 0 0 8163800 0 0 0 0 0 13351000 0 0 0 0 11407 1496 11103 214654;214655;214656;214657 131864;131865;131866 131865 3 KTVLTEFNR Unmodified 1106.6084 0.60840804 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 17.258 17.826 2;3 0.00018112 6658 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.41 98.146 557020000 33168000 24714000 29444000 2763600 862030 1020300 26907000 44465000 40511000 5870500 4728800 5013900 45481000 41849000 39858000 2534900 772120 996400 68719000 66368000 60800000 3320100 3758800 3097100 11408 882 11104 214658;214659;214660;214661;214662;214663;214664;214665;214666;214667;214668;214669;214670;214671;214672;214673;214674;214675;214676;214677;214678;214679;214680;214681;214682;214683;214684;214685;214686;214687;214688;214689;214690;214691;214692;214693 131867;131868;131869;131870;131871;131872;131873;131874;131875;131876;131877;131878;131879;131880;131881;131882;131883;131884;131885;131886;131887;131888;131889;131890;131891 131870 25 KTVVADGVGQGYK Unmodified 1320.7038 0.70376498 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 1 1 1 2 2 2 13.422 13.836 2;3 1.3157E-31 4106 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 265.82 243.74 515450000 71741000 71271000 67168000 0 0 0 54972000 44286000 38292000 9718200 6379500 7311100 23895000 23403000 22427000 15353000 11637000 5217000 0 0 16884000 7547300 8897400 9045700 11409 1653 11105 214694;214695;214696;214697;214698;214699;214700;214701;214702;214703;214704;214705;214706;214707;214708;214709;214710;214711;214712;214713;214714;214715;214716;214717;214718;214719 131892;131893;131894;131895;131896;131897;131898;131899;131900;131901 131901 10 KTVVADGVGQGYKEVQEISPNLR Unmodified 2486.3129 0.3129013 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 1 31.828 29.901 3;4 8.931E-10 11164 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 112.45 109.35 39669000 0 0 0 1545100 0 0 0 0 0 3140000 0 0 0 0 0 0 0 0 0 0 0 14775000 11045000 9163900 11410 1653 11106 214720;214721;214722;214723;214724;214725;214726 131902;131903;131904;131905;131906 131904 5 KTYEIKPDEQFLFHAAAGGVGLIACQWAK Unmodified 3247.6488 0.64883965 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 50.495 49.06 4 1.1013E-07 24189 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 96.338 85.916 127690000 21051000 29127000 19915000 0 0 0 23308000 27859000 0 0 0 0 0 6427300 0 0 0 0 0 0 0 0 0 0 11411 1316 11107 214727;214728;214729;214730;214731;214732 131907;131908 131908 2 KTYMSDCLK Unmodified 1144.5257 0.52566596 955 P0AFM4 psiF Phosphate starvation-inducible protein PsiF yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.057 13.845 2 0.0008922 4305 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.19 90.156 323180000 27351000 23749000 25440000 0 0 0 30510000 34032000 35857000 0 0 0 24779000 32111000 24934000 0 1384300 0 22695000 21411000 18924000 0 0 0 11412 955 11108 214733;214734;214735;214736;214737;214738;214739;214740;214741;214742;214743;214744;214745 131909;131910;131911;131912 131912 4 KVAADYLK Unmodified 906.51747 0.51746776 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.01 13.868 2 0.0067782 4131 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 86.67 49.969 324710000 46282000 41185000 42537000 0 0 0 36494000 29051000 36648000 0 0 0 15315000 14535000 13157000 0 0 0 15546000 18401000 15560000 0 0 0 11413 1420 11109 214746;214747;214748;214749;214750;214751;214752;214753;214754;214755;214756;214757 131913;131914;131915;131916;131917;131918;131919;131920 131915 8 KVADDAPLMER Unmodified 1243.6231 0.62307182 1654 P63020 nfuA Fe/S biogenesis protein NfuA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 1 2 2 2 1 1 16.172 16.869 2;3 2.3778E-10 5471 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 227.27 223.7 1539800000 139670000 175840000 174720000 1485000 0 0 130420000 139170000 135000000 0 1365800 1556600 97928000 78998000 77586000 641880 0 0 134550000 120150000 126670000 1984400 2116700 0 11414 1654 11110 214758;214759;214760;214761;214762;214763;214764;214765;214766;214767;214768;214769;214770;214771;214772;214773;214774;214775;214776;214777;214778;214779;214780;214781;214782;214783;214784;214785;214786;214787 131921;131922;131923;131924;131925;131926;131927;131928;131929;131930;131931;131932;131933;131934;131935;131936;131937;131938;131939;131940;131941;131942;131943;131944;131945 131942 25 KVADFFMDFLGASEGLNAK Unmodified 2059.0085 0.0084627814 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 54.606 53.174 3 5.3276E-14 21294 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 106.75 91.356 61660000 0 0 0 0 0 0 0 2966800 0 0 0 0 4127700 0 0 0 0 0 0 4429800 0 21342000 0 28794000 11415 1433 11111 214788;214789;214790;214791;214792 131946;131947 131946 2 KVAEFFGK Unmodified 924.5069 0.50690308 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.706 18.178 2 0.0040306 6168 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 93.992 78.359 855340000 94744000 0 0 3214700 2609600 2498500 0 117580000 0 14834000 12282000 11150000 77996000 88367000 91147000 0 0 0 96708000 113140000 120030000 2866600 3011100 3166100 11416 293 11112 214793;214794;214795;214796;214797;214798;214799;214800;214801;214802;214803;214804;214805;214806;214807;214808;214809 131948;131949;131950;131951;131952;131953;131954;131955;131956 131956 9 KVAIIGAGPAGLACADVLTR Unmodified 1952.0877 0.087716155 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.254 37.56 3 3.1804E-10 18072 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.46 117.61 83241000 15684000 20211000 15294000 0 561760 0 5923400 5530500 5122200 0 0 0 2935900 0 3120700 0 0 0 0 4743600 4113700 0 0 0 11417 219 11113 214810;214811;214812;214813;214814;214815;214816;214817;214818;214819;214820 131957;131958 131958 2 KVAKPVEEVNAEIQR Unmodified 1708.9472 0.94718315 255 P0A6K3 def Peptide deformylase yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 2 2 2 2 2 2 15.096 15.915 2;3 9.8249E-08 5094 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 132.65 114.51 306100000 24146000 31255000 35202000 0 0 0 26338000 21047000 21639000 0 0 0 18480000 23708000 27118000 0 0 0 27190000 24197000 25783000 0 0 0 11418 255 11114 214821;214822;214823;214824;214825;214826;214827;214828;214829;214830;214831;214832;214833;214834;214835;214836;214837;214838;214839;214840;214841;214842 131959;131960;131961;131962;131963;131964;131965;131966;131967;131968;131969;131970;131971;131972 131970 14 KVCEFWADR Unmodified 1209.5601 0.56007764 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 22.262 22.059 2;3 0.00010878 8683 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 150.62 134.15 1327000000 0 0 0 0 0 0 150150000 139090000 131360000 0 0 0 129410000 116470000 118830000 0 0 0 185320000 180520000 175890000 0 0 0 11419 1324 11115 214843;214844;214845;214846;214847;214848;214849;214850;214851;214852;214853;214854;214855;214856;214857;214858;214859;214860 131973;131974;131975;131976;131977;131978;131979;131980;131981;131982;131983;131984;131985 131982 13 KVDAASVQLDDK Unmodified 1287.667 0.66704513 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.583 15.201 2 4.0522E-06 4937 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 136.7 114.17 73024000 5825500 4310300 4138800 527140 388440 402590 6289900 4560500 5774200 1213500 1229600 1360400 3851700 4195700 3871700 0 0 0 7144400 8645200 4664100 1353400 1666100 1610600 11420 807 11116 214861;214862;214863;214864;214865;214866;214867;214868;214869;214870;214871;214872;214873;214874;214875;214876;214877;214878;214879;214880;214881 131986;131987;131988;131989;131990;131991 131989 6 KVDAASVQLDDKQR Unmodified 1571.8267 0.82673367 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 2 By matching By MS/MS By matching 1 1 1 13.07 13.293 3 0.00028949 3218 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 58.831 53.752 7877400 0 0 0 0 0 0 0 0 0 2865400 2161300 2850700 0 0 0 0 0 0 0 0 0 0 0 0 11421 807 11117 214882;214883;214884 131992 131992 1 KVDIGTSHIAGYTLEGK Unmodified 1787.9418 0.94176342 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 23.931 23.211 2 0.00028955 9705 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 87.18 79.269 32493000 0 8369800 8004000 0 0 0 0 0 0 0 0 0 0 4827200 5483800 0 0 0 0 5808500 0 0 0 0 11422 111 11118 214885;214886;214887;214888;214889 131993 131993 1 KVDLVFAPSVK Unmodified 1201.7071 0.70705945 1375 P31663 panC Pantothenate synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 29.197 27.931 2;3 2.251E-06 12815 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 181.4 173.36 1591300000 215970000 182240000 194150000 304570 0 0 108090000 118130000 108810000 0 0 0 94347000 108760000 94295000 0 0 0 113090000 133410000 119720000 0 0 0 11423 1375 11119 214890;214891;214892;214893;214894;214895;214896;214897;214898;214899;214900;214901;214902;214903;214904;214905;214906;214907;214908;214909;214910;214911;214912;214913;214914 131994;131995;131996;131997;131998;131999;132000;132001;132002;132003;132004;132005;132006;132007;132008;132009;132010;132011;132012;132013 132004 20 KVDQEYEGIVR Unmodified 1334.683 0.68302954 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 2 2 2 1 2 1 1 1 2 2 2 2 2 2 17.292 17.733 2;3 0.00014348 5420 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 90.306 75.275 2735400000 1712600 0 0 4574000 4862400 1735100 328500000 329130000 306330000 45204000 41912000 40436000 0 105350000 187840000 6450700 6464800 5022200 448530000 408930000 381260000 28888000 28520000 23748000 11424 531 11120 214915;214916;214917;214918;214919;214920;214921;214922;214923;214924;214925;214926;214927;214928;214929;214930;214931;214932;214933;214934;214935;214936;214937;214938;214939;214940;214941;214942;214943;214944;214945;214946;214947;214948;214949;214950 132014;132015;132016;132017;132018;132019;132020;132021;132022;132023;132024;132025;132026;132027 132017 13 KVDVTGTSK Unmodified 933.51311 0.51311067 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 2 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 2 1 8.895 9.508 2 8.8318E-08 2372 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 189.38 155.64 4882700000 943570000 900080000 898490000 38460000 41779000 40071000 89726000 58724000 59290000 90179000 67542000 61778000 121200000 117980000 90127000 71835000 56228000 53340000 251070000 274590000 350070000 77185000 79462000 49874000 11425 1621 11121 214951;214952;214953;214954;214955;214956;214957;214958;214959;214960;214961;214962;214963;214964;214965;214966;214967;214968;214969;214970;214971;214972;214973;214974;214975;214976;214977;214978;214979;214980;214981 132028;132029;132030;132031;132032;132033;132034;132035;132036;132037;132038;132039;132040;132041;132042;132043;132044;132045 132041 18 KVDYSTFLQEVNNDQVR Unmodified 2054.0069 0.006882877 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 2 2 2 1 1 2 1 1 1 1 1 2 2 2 2 39.723 37.956 2;3 5.5978E-19 15377 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 237.46 231.62 896330000 13525000 11641000 9329900 18778000 20771000 20503000 88240000 68947000 68227000 44719000 52145000 51150000 36556000 39323000 48241000 11826000 10748000 12537000 44768000 53439000 64009000 35980000 34353000 36571000 11426 595 11122 214982;214983;214984;214985;214986;214987;214988;214989;214990;214991;214992;214993;214994;214995;214996;214997;214998;214999;215000;215001;215002;215003;215004;215005;215006;215007;215008;215009;215010;215011;215012;215013;215014;215015 132046;132047;132048;132049;132050;132051;132052;132053;132054;132055;132056;132057;132058;132059;132060;132061;132062;132063;132064;132065;132066 132047 19 KVEADCR Unmodified 876.41235 0.41235077 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.9189 7.529 2 2.8927E-08 1748 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 206.51 193.3 4184400000 490590000 509580000 467560000 20736000 17662000 18967000 180330000 162350000 161590000 49187000 42012000 39113000 251610000 217540000 188210000 59196000 59542000 34977000 386500000 357710000 302480000 59495000 59234000 48212000 11427 1620 11123 215016;215017;215018;215019;215020;215021;215022;215023;215024;215025;215026;215027;215028;215029;215030;215031;215032;215033;215034;215035;215036;215037;215038;215039;215040 132067;132068;132069;132070;132071;132072;132073;132074;132075;132076;132077;132078;132079;132080;132081;132082;132083;132084;132085;132086 132077 20 KVEDEDFGYCESCGVEIGIR Unmodified 2361.0253 0.025311412 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 4 3 3 1 2 3 3 4 2 4 36.765 35.13 3 1.1161E-14 16715 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 144.27 144.24 428000000 25227000 21244000 24916000 0 0 0 51395000 41924000 45407000 0 0 1882800 28720000 35750000 28487000 0 0 0 51760000 28343000 42946000 0 0 0 11428 674 11124 215041;215042;215043;215044;215045;215046;215047;215048;215049;215050;215051;215052;215053;215054;215055;215056;215057;215058;215059;215060;215061;215062;215063;215064;215065;215066;215067;215068;215069;215070;215071;215072;215073;215074;215075;215076;215077;215078;215079 132087;132088;132089;132090;132091;132092;132093;132094;132095;132096;132097;132098;132099;132100;132101;132102;132103;132104;132105;132106;132107;132108;132109;132110;132111;132112;132113 132089 15 KVEHWFGDYAQR Unmodified 1534.7317 0.73171107 153 P07023 tyrA T-protein;Chorismate mutase;Prephenate dehydrogenase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 20.188 20.606 3 0.00018533 8076 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 77.597 72.875 107680000 9397100 0 5371600 0 0 0 0 10224000 17359000 0 0 0 10299000 6960000 8803400 0 0 0 11582000 14641000 13039000 0 0 0 11429 153 11125 215080;215081;215082;215083;215084;215085;215086;215087;215088;215089 132114;132115;132116;132117;132118;132119;132120 132116 6 KVEIIVGDK Unmodified 999.59645 0.59644637 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.416 16.168 2 0.024019 5619 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 63.216 39.261 69134000 12799000 12705000 2725000 989040 810260 770920 6052600 4387500 5649300 0 0 0 3232100 3409900 2462900 0 0 1002700 0 5661200 4967400 0 1509100 0 11430 1213 11126 215090;215091;215092;215093;215094;215095;215096;215097;215098;215099;215100;215101;215102;215103;215104;215105 132121 132121 1 KVEIPGVATTASPSSEVGR Unmodified 1883.9953 0.99525556 1829 P76177 ydgH Protein YdgH yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 26.442 25.272 2;3 1.3815E-09 10907 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 141.46 136.08 804820000 95922000 101690000 93973000 14664000 10943000 14851000 42754000 50691000 40295000 13412000 13429000 16570000 40073000 36428000 38559000 3497600 3346200 5366300 45904000 49628000 44331000 7480200 10426000 10583000 11431 1829 11127 215106;215107;215108;215109;215110;215111;215112;215113;215114;215115;215116;215117;215118;215119;215120;215121;215122;215123;215124;215125;215126;215127;215128;215129;215130;215131;215132;215133;215134;215135;215136;215137;215138;215139;215140;215141;215142;215143;215144;215145;215146;215147;215148;215149 132122;132123;132124;132125;132126;132127;132128;132129;132130;132131;132132;132133;132134;132135;132136;132137;132138;132139;132140;132141;132142;132143;132144;132145;132146;132147;132148;132149;132150;132151;132152;132153;132154;132155 132151 34 KVEMADPMVAQR Unmodified 1373.6795 0.67954084 608 P0AAR3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 18.352 19.036 2 7.4831E-05 7159 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.2 92.967 59841000 9631600 15817000 11086000 0 0 0 0 0 0 0 0 0 3184400 0 2405300 0 0 0 4826500 6575200 6315000 0 0 0 11432 608 11128 215150;215151;215152;215153;215154;215155;215156;215157 132156;132157 132156 2 KVENIVR Unmodified 856.51305 0.51305109 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.261 11.898 2 0.00056102 2999 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.88 104.29 3018400000 169350000 157340000 133670000 0 0 0 259030000 220510000 262470000 47798000 42680000 43076000 275050000 277480000 220930000 0 0 0 301720000 301920000 285010000 9841100 10493000 0 11433 1120 11129 215158;215159;215160;215161;215162;215163;215164;215165;215166;215167;215168;215169;215170;215171;215172;215173;215174 132158;132159;132160;132161;132162;132163;132164;132165;132166;132167;132168 132166 11 KVEVMNTDAEGR Unmodified 1347.6453 0.64526383 1456 P37095 pepB Peptidase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 12.409 13.24 2;3 2.6401E-23 3870 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 237.8 227.04 2089200000 182670000 139370000 175700000 0 0 0 202090000 198530000 179770000 0 0 0 204570000 202310000 204340000 0 0 0 90970000 160050000 148800000 0 0 0 11434 1456 11130 215175;215176;215177;215178;215179;215180;215181;215182;215183;215184;215185;215186;215187;215188;215189;215190;215191;215192;215193;215194;215195;215196;215197 132169;132170;132171;132172;132173;132174;132175;132176;132177;132178;132179;132180;132181;132182;132183;132184;132185;132186;132187 132180 19 KVEYPVAVVEGHNNATVK Unmodified 1953.032 0.031975416 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 19.244 19.843 2;3 6.2482E-17 7559 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 162.46 157.28 296210000 104410000 90114000 101680000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11435 1464 11131 215198;215199;215200;215201;215202;215203 132188;132189;132190;132191;132192;132193 132192 5 KVFQNTEHVHVVGLR Unmodified 1761.9638 0.96383627 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1 1 2 2 2 2 2 1 1 1 1 1 15.665 16.434 3;4 0.00017086 5814 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 71.279 69.457 253810000 13234000 23015000 7243300 0 923420 725800 20246000 20459000 26799000 0 0 0 16911000 19380000 15347000 0 0 0 28878000 23231000 20011000 6507300 7209400 3694800 11436 1197 11132 215204;215205;215206;215207;215208;215209;215210;215211;215212;215213;215214;215215;215216;215217;215218;215219;215220;215221;215222;215223;215224;215225;215226 132194;132195;132196;132197;132198;132199;132200;132201;132202 132197 8 KVGAEVEEGHDYIR Unmodified 1600.7845 0.7845345 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 13.799 14.664 3 0.065986 4655 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 35.1 34.571 125580000 9995900 13681000 19395000 0 0 0 7259200 6257100 10005000 0 0 0 6462000 8032900 8763400 0 0 0 12000000 11742000 11987000 0 0 0 11437 232 11133 215227;215228;215229;215230;215231;215232;215233;215234;215235;215236;215237;215238;215239 132203;132204 132203 1 KVGLVDKPNFR Unmodified 1271.735 0.73500553 706 P0AC78 wecA Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 15.833 16.078 3 0.029361 4547 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 38.634 29.905 9806800 0 0 0 1019000 0 0 0 0 0 2455000 2159000 2369800 0 0 0 0 0 0 0 0 0 1804100 0 0 11438 706 11134 215240;215241;215242;215243;215244 132205;132206 132205 2 KVGVGLGTNYEEWLR Unmodified 1719.8944 0.8944193 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.483 36.809 3 3.7645E-15 17816 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.96 142.65 365030000 40606000 35232000 35740000 0 0 0 43007000 42155000 36448000 0 0 0 19078000 19106000 17886000 0 0 0 27637000 28840000 19294000 0 0 0 11439 874 11135 215245;215246;215247;215248;215249;215250;215251;215252;215253;215254;215255;215256 132207;132208;132209;132210;132211;132212;132213 132208 7 KVGVNQVVGVNLFDVYR Unmodified 1905.0472 0.047231549 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.785 42.27 3 4.4785E-09 20707 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 124.25 123.22 246030000 18794000 17702000 15982000 0 0 0 19138000 17389000 16438000 0 0 0 25004000 20588000 20036000 0 0 0 27453000 22156000 25347000 0 0 0 11440 161 11136 215257;215258;215259;215260;215261;215262;215263;215264;215265;215266;215267;215268 132214;132215;132216;132217;132218;132219;132220;132221;132222 132218 9 KVGVQNGTTHQK Unmodified 1295.6946 0.69459728 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 1 By MS/MS 1 6.862 7.5601 2 0.13702 1453 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 38.75 26.514 5300200 0 5300200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11441 1349 11137 215269 132223 132223 1 KVHPNDDVNK Unmodified 1164.5887 0.58873523 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 6.9317 7.6642 2 0.00015436 1467 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 112.3 105.47 79323000 27838000 29509000 21976000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11442 106 11138 215270;215271;215272 132224;132225;132226 132226 3 KVIEAESLDLR Unmodified 1271.7085 0.70851601 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 1 1 1 22.819 22.143 2;3 1.574E-05 6655 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 101.71 77.962 858120000 0 78793000 69380000 0 5117400 3203100 53656000 62742000 59132000 19803000 24919000 8684800 89892000 72118000 78294000 10474000 5560100 0 62190000 69945000 69434000 4838400 4229900 5719800 11443 297 11139 215273;215274;215275;215276;215277;215278;215279;215280;215281;215282;215283;215284;215285;215286;215287;215288;215289;215290;215291;215292;215293;215294;215295;215296;215297;215298;215299;215300;215301;215302;215303;215304;215305;215306;215307;215308 132227;132228;132229;132230;132231;132232;132233;132234;132235;132236;132237;132238;132239;132240;132241;132242;132243;132244;132245;132246;132247;132248;132249;132250;132251;132252;132253;132254;132255;132256 132230 22 KVIGHLAHGNLEYK Unmodified 1577.8678 0.86781062 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 3 3 2 2 3 3 3 2 3 1 1 3 3 3 1 2 2 12.573 13.249 2;3;4 1.0254E-10 3737 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.99 157.26 707280000 14238000 9743600 0 5909300 4022000 5572900 65506000 74148000 37269000 26810000 32152000 31692000 46416000 34635000 54364000 2159900 3968200 0 76757000 75813000 67957000 11183000 15438000 11522000 11444 644 11140 215309;215310;215311;215312;215313;215314;215315;215316;215317;215318;215319;215320;215321;215322;215323;215324;215325;215326;215327;215328;215329;215330;215331;215332;215333;215334;215335;215336;215337;215338;215339;215340;215341;215342;215343;215344;215345;215346;215347;215348;215349;215350;215351;215352;215353;215354;215355;215356;215357;215358 132257;132258;132259;132260;132261;132262;132263;132264;132265 132258 9 KVIGIGSPR Unmodified 925.5709 0.57090032 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.147 13.753 2 0.00011246 3412 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 138.78 131.22 614590000 20376000 12906000 22716000 13843000 17395000 18345000 43146000 35423000 36726000 17063000 12731000 13948000 38466000 42035000 34551000 10259000 4253300 5606300 55219000 61046000 65292000 10884000 11212000 11151000 11445 1427 11141 215359;215360;215361;215362;215363;215364;215365;215366;215367;215368;215369;215370;215371;215372;215373;215374;215375;215376;215377;215378;215379;215380;215381;215382 132266;132267;132268;132269;132270;132271;132272;132273;132274;132275;132276;132277;132278 132274 13 KVIILEGILLLTDAR Unmodified 1666.0393 0.039292625 425 P0A8F4 udk Uridine kinase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 2 2 1 1 1 1 2 2 1 1 1 2 1 1 1 1 1 1 1 2 53.919 52.715 2;3 9.4207E-08 21469 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 131.96 131.96 238500000 3229500 0 0 9727300 8598000 8208700 0 8382600 7326000 20193000 36507000 36938000 4836700 4793800 3049000 12043000 11385000 15065000 8288800 3952000 4746500 8277500 8825300 14133000 11446 425 11142 215383;215384;215385;215386;215387;215388;215389;215390;215391;215392;215393;215394;215395;215396;215397;215398;215399;215400;215401;215402;215403;215404;215405;215406;215407;215408;215409 132279;132280;132281;132282;132283;132284;132285;132286;132287;132288;132289;132290 132282 12 KVISLPAPLR Unmodified 1092.7019 0.70191449 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 2 2 2 2 2 27.121 25.742 2;3 0.00016809 11763 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.08 76.124 159580000 0 0 0 0 0 0 25628000 27418000 27962000 2170500 1489000 0 14598000 17873000 12823000 0 0 0 10463000 8975600 10176000 0 0 0 11447 506 11143 215410;215411;215412;215413;215414;215415;215416;215417;215418;215419;215420;215421;215422;215423;215424;215425;215426;215427;215428;215429;215430 132291;132292;132293;132294 132291 4 KVIYVPGK Unmodified 902.55894 0.55893865 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.189 14.099 2 0.00080263 4394 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 129.39 100.49 1772000000 150620000 140170000 122760000 1598500 1127800 1377000 148540000 144010000 135210000 0 0 0 145100000 155890000 131660000 0 0 0 201460000 162000000 130480000 0 0 0 11448 170 11144 215431;215432;215433;215434;215435;215436;215437;215438;215439;215440;215441;215442;215443;215444;215445 132295;132296;132297;132298;132299;132300;132301;132302;132303;132304;132305;132306 132303 12 KVLAVAVYNHYK Unmodified 1403.7925 0.79252041 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.202 17.661 3 0.0005804 5895 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 73.951 73.951 217330000 14597000 0 10026000 1451000 0 0 26346000 18354000 18591000 5612300 5997200 4888800 12210000 10916000 19803000 949380 1342700 0 20516000 22550000 18730000 1511500 1576500 1362700 11449 244 11145 215446;215447;215448;215449;215450;215451;215452;215453;215454;215455;215456;215457;215458;215459;215460;215461;215462;215463;215464;215465 132307;132308;132309;132310;132311;132312;132313 132313 7 KVLDSKPSVLALNIQR Unmodified 1780.0571 0.057067954 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.387 26.104 3 2.1966E-08 12293 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.03 114.37 336340000 23493000 23337000 25605000 0 0 0 32304000 34996000 30124000 4670500 0 2620400 25182000 21313000 19190000 0 0 0 34393000 31909000 27199000 0 0 0 11450 1044 11146 215466;215467;215468;215469;215470;215471;215472;215473;215474;215475;215476;215477;215478;215479 132314;132315;132316;132317;132318;132319;132320;132321;132322;132323;132324 132314 11 KVLESAIANAEHNDGADIDDLK Unmodified 2337.1448 0.14483292 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 3 2 2 1 2 2 2 2 2 2 2 2 2 1 1 2 28.84 27.581 3;4 4.2576E-35 13078 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 214.92 206.82 2887900000 462970000 415990000 368090000 2199900 2675200 3899700 104390000 45473000 110720000 10458000 10487000 5941500 179020000 198150000 144720000 9205400 6358400 6499700 253190000 256060000 267310000 5725200 6758700 11621000 11451 1636 11147 215480;215481;215482;215483;215484;215485;215486;215487;215488;215489;215490;215491;215492;215493;215494;215495;215496;215497;215498;215499;215500;215501;215502;215503;215504;215505;215506;215507;215508;215509;215510;215511;215512;215513;215514;215515;215516;215517;215518;215519;215520;215521;215522;215523 132325;132326;132327;132328;132329;132330;132331;132332;132333;132334;132335;132336;132337;132338;132339;132340 132328 16 KVLESAIANAEHNDGADIDDLKVTK Unmodified 2665.3559 0.35588833 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.415 27.249 3;4 0.00010576 8770 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 74.665 74.18 107290000 8309800 0 0 0 0 2050200 0 0 0 3371600 0 3051100 0 0 0 28763000 14979000 20204000 0 11865000 4765200 3584400 3389300 2958400 11452 1636 11148 215524;215525;215526;215527;215528;215529;215530;215531;215532;215533;215534;215535 132341;132342;132343;132344 132342 4 KVLGFITDAGGR Unmodified 1232.6877 0.68772099 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 1 1 2 2 2 1 26.619 25.552 2;3 2.9929E-05 11544 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 74.094 58.229 1322300000 70855000 66630000 57118000 2527000 0 733630 140870000 137470000 119310000 2227100 0 0 116830000 110060000 114460000 2390000 0 1479000 135110000 124930000 117080000 0 0 2174000 11453 192 11149 215536;215537;215538;215539;215540;215541;215542;215543;215544;215545;215546;215547;215548;215549;215550;215551;215552;215553;215554;215555;215556;215557;215558;215559;215560;215561;215562;215563;215564;215565;215566;215567 132345;132346;132347;132348;132349;132350;132351;132352;132353;132354;132355;132356;132357;132358;132359;132360;132361 132353 17 KVLIEATSNQVNQFGGYTGMTPADFR Unmodified 2843.3912 0.39122798 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.903 40.195 3 9.048E-31 19902 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 189.09 186.51 957670000 50518000 50612000 39666000 8131900 7969000 8935400 145310000 121720000 116770000 20204000 20932000 16430000 55459000 46208000 41763000 5712600 3927100 0 55390000 66065000 59536000 5759400 4774000 5873000 11454 1046 11150 215568;215569;215570;215571;215572;215573;215574;215575;215576;215577;215578;215579;215580;215581;215582;215583;215584;215585;215586;215587;215588;215589;215590 132362;132363;132364;132365;132366;132367;132368;132369;132370;132371;132372;132373;132374;132375;132376;132377;132378;132379 132367 18 KVLLEIADLK Unmodified 1140.7118 0.71181048 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 1 32.954 31.358 2;3 0.0020444 10786 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 94.363 77.823 229170000 35717000 25585000 25775000 13184000 11911000 12641000 8899700 4081400 4774600 9955900 9505800 11274000 6484500 6037000 5343300 0 0 0 7254100 9522700 8824300 5138400 4351900 2909100 11455 1935 11151 215591;215592;215593;215594;215595;215596;215597;215598;215599;215600;215601;215602;215603;215604;215605;215606;215607;215608;215609;215610;215611;215612;215613;215614;215615;215616;215617;215618;215619;215620;215621;215622;215623;215624;215625;215626;215627;215628 132380;132381;132382;132383;132384;132385;132386;132387;132388;132389;132390;132391;132392 132385 13 KVLNIFPSIDTGVCAASVR Unmodified 2046.0932 0.093195464 400 P0A862 tpx Thiol peroxidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 1 2 2 2 2 2 2 42.393 40.76 2;3 8.208E-18 19995 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.05 127.63 1096300000 109270000 100820000 91673000 0 0 2733400 75756000 70575000 83835000 0 0 0 78525000 77812000 71563000 0 0 0 115510000 112130000 106080000 0 0 0 11456 400 11152 215629;215630;215631;215632;215633;215634;215635;215636;215637;215638;215639;215640;215641;215642;215643;215644;215645;215646;215647;215648;215649;215650;215651 132393;132394;132395;132396;132397;132398;132399;132400;132401;132402;132403;132404;132405;132406;132407;132408;132409;132410;132411;132412;132413 132397 19 KVLVNDK Unmodified 814.49125 0.49125301 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 6.755 7.7258 2 0.037619 1922 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 67.032 26.929 17111000 0 0 0 2433400 2208800 1766400 1765700 4192200 4744700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11457 649 11153 215652;215653;215654;215655;215656;215657 132414;132415;132416;132417;132418;132419 132416 6 KVMWHAAQIR Unmodified 1238.6706 0.67063114 128 P06715 gor Glutathione reductase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 2 1 2 13.668 14.494 2;3 0.00049643 4193 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 105.81 93.22 285420000 35283000 26485000 29157000 0 0 0 39221000 32049000 34298000 0 0 0 0 7072900 6498600 0 0 0 31041000 7882100 36429000 0 0 0 11458 128 11154 215658;215659;215660;215661;215662;215663;215664;215665;215666;215667;215668;215669;215670;215671;215672;215673;215674;215675;215676 132420;132421 132421 1 KVNFEPDSAFR Unmodified 1308.6463 0.64625011 1181 P21499 rnr Ribonuclease R yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 23.035 22.531 2 0.0001145 9655 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.5 104.48 18869000 7067900 6194300 5606500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11459 1181 11155 215677;215678;215679 132422;132423 132423 2 KVNPETTLFLVASK Unmodified 1545.8766 0.87664397 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.396 32.948 2;3 4.4522E-11 15562 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 172.92 166.68 1880200000 184340000 176820000 150650000 0 0 0 231500000 240630000 232570000 0 0 0 105610000 96444000 77327000 0 0 0 127130000 124660000 132500000 0 0 0 11460 277 11156 215680;215681;215682;215683;215684;215685;215686;215687;215688;215689;215690;215691;215692;215693;215694;215695;215696;215697;215698;215699;215700;215701;215702;215703 132424;132425;132426;132427;132428;132429;132430;132431;132432;132433;132434;132435;132436;132437;132438 132432 15 KVNPYDK Unmodified 862.45487 0.45486751 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 9.8533 10.675 2 0.0091417 2122 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 91.906 74.345 79663000 3651500 5323900 0 0 0 0 6108500 5190400 4468300 0 0 0 5414500 6533300 4466300 0 0 0 10587000 11266000 16654000 0 0 0 11461 1323 11157 215704;215705;215706;215707;215708;215709;215710;215711;215712;215713;215714 132439;132440;132441;132442;132443;132444 132443 6 KVPGYLEEEGANK Unmodified 1432.7198 0.71980898 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 1 15.206 15.968 2;3 4.1791E-12 5382 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 183.78 163.08 1951600000 180420000 159070000 147400000 548380 531370 490040 190170000 178860000 182020000 0 0 648040 136430000 119290000 151230000 0 0 0 185340000 162690000 155060000 853160 578350 0 11462 702 11158 215715;215716;215717;215718;215719;215720;215721;215722;215723;215724;215725;215726;215727;215728;215729;215730;215731;215732;215733;215734;215735;215736;215737;215738;215739;215740;215741;215742;215743;215744 132445;132446;132447;132448;132449;132450;132451;132452;132453;132454;132455;132456;132457;132458;132459;132460;132461;132462 132451 18 KVPLPVTPSLR Unmodified 1205.7496 0.74959297 1511 P39176 erfK Probable L,D-transpeptidase ErfK/SrfK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 26.635 25.634 3 0.00010607 11554 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.69 100.69 66041000 15084000 12189000 12532000 0 0 0 0 0 0 0 0 0 0 0 5615100 0 0 0 6745300 7435600 6438900 0 0 0 11463 1511 11159 215745;215746;215747;215748;215749;215750;215751 132463;132464;132465 132464 3 KVPQVSTPTLVEVSR Unmodified 1638.9305 0.93047046 9;10 CON__P02768-1;CON__P02769 no no 0 0 1 By matching By MS/MS By MS/MS 1 1 1 28.713 26.63 3 0.0051343 9976 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 55.755 48.693 12146000 0 0 0 0 0 0 0 0 0 4191900 4178400 3775900 0 0 0 0 0 0 0 0 0 0 0 0 + 11464 9;10 11160 215752;215753;215754 132466;132467 132466 2 KVPVMIHR Unmodified 978.57969 0.57969087 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.212 12.947 2 0.00089584 3542 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 126.24 125.33 1048000000 97012000 79625000 74235000 0 0 850290 90421000 92599000 89650000 839600 988640 1138400 105640000 96524000 95687000 0 0 0 64081000 77201000 81523000 0 0 0 11465 445 11161 215755;215756;215757;215758;215759;215760;215761;215762;215763;215764;215765;215766;215767;215768;215769;215770 132468;132469;132470;132471;132472;132473;132474;132475;132476;132477;132478 132470 11 KVQEHLNK Unmodified 994.55598 0.55597854 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.6369 7.3411 2 2.67E-05 1476 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 176.75 139.19 2119500000 325670000 316560000 331120000 126740000 96038000 149490000 158670000 174200000 158630000 64497000 46300000 45039000 16085000 14433000 17920000 0 0 0 20483000 16203000 22581000 8936800 5706000 4188500 11466 783 11162 215771;215772;215773;215774;215775;215776;215777;215778;215779;215780;215781;215782;215783;215784;215785;215786;215787;215788;215789;215790;215791 132479;132480;132481;132482;132483;132484;132485;132486;132487;132488;132489;132490;132491;132492;132493;132494;132495;132496;132497 132496 19 KVSGNSPVIFDVTHALQCR Unmodified 2127.0895 0.089507069 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 2 2 2 2 2 36.048 34.472 3;4 3.2001E-14 15737 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.71 142.7 884540000 44770000 93102000 75200000 0 0 0 93387000 85159000 81897000 0 0 0 46396000 66871000 60186000 0 0 0 75012000 85874000 76683000 0 0 0 11467 299 11163 215792;215793;215794;215795;215796;215797;215798;215799;215800;215801;215802;215803;215804;215805;215806;215807;215808;215809;215810;215811;215812;215813 132498;132499;132500;132501;132502;132503;132504;132505;132506;132507;132508;132509;132510;132511;132512;132513;132514;132515;132516 132515 19 KVSQALDILTYTNK Unmodified 1592.8774 0.87737225 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 32.541 31.225 2;3 1.8599E-26 14780 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 237.27 221.89 814600000 101310000 112110000 86369000 952790 994610 2024000 30974000 28718000 31316000 0 0 0 48413000 45824000 43288000 0 3771300 0 95601000 81448000 101490000 0 0 0 11468 1636 11164 215814;215815;215816;215817;215818;215819;215820;215821;215822;215823;215824;215825;215826;215827;215828;215829;215830;215831;215832;215833;215834;215835;215836;215837;215838;215839;215840;215841;215842 132517;132518;132519;132520;132521;132522;132523;132524;132525;132526;132527;132528;132529;132530;132531;132532;132533;132534;132535 132527 19 KVSQALDILTYTNKK Unmodified 1720.9723 0.97233527 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.219 25.128 3 0.00011765 7627 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 80.411 74.983 154330000 13493000 10596000 12477000 3211600 3510600 4557200 0 0 0 5963700 5166200 4727900 6162500 4575200 6538700 8165600 5899900 8181300 10483000 10790000 9838400 6688800 6525400 6782700 11469 1636 11165 215843;215844;215845;215846;215847;215848;215849;215850;215851;215852;215853;215854;215855;215856;215857;215858;215859;215860;215861;215862;215863 132536;132537;132538;132539;132540;132541;132542;132543;132544;132545;132546;132547;132548;132549;132550;132551;132552 132537 17 KVSTDPK Unmodified 773.42832 0.42831841 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 6.673 7.2923 2 0.00701 1796 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 98.997 70.89 1483100000 0 0 0 5680200 4634900 4844200 234400000 210430000 199130000 47621000 44266000 40077000 77896000 66196000 63351000 61731000 55005000 43588000 92429000 92621000 90125000 16098000 15896000 17113000 11470 1745 11166 215864;215865;215866;215867;215868;215869;215870;215871;215872;215873;215874;215875;215876;215877;215878;215879;215880;215881;215882;215883;215884;215885;215886;215887 132553;132554;132555;132556;132557;132558;132559;132560;132561;132562;132563;132564;132565;132566;132567 132555 15 KVTDALLDYGHK Unmodified 1358.7194 0.71941505 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 2 2 1 1 1 1 1 1 2 1 1 1 1 1 20.253 20.575 2;3 0.00073349 6092 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 83.045 64.733 176650000 14219000 16441000 13935000 0 0 0 7407800 8370300 7655500 0 0 0 5692500 4474200 4228700 26019000 24330000 26498000 4991800 5526300 6861700 0 0 0 11471 456 11167 215888;215889;215890;215891;215892;215893;215894;215895;215896;215897;215898;215899;215900;215901;215902;215903;215904;215905 132568;132569;132570;132571;132572;132573 132568 5 KVTTLTR Unmodified 817.50215 0.50215205 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.461 11.277 2 0.0014592 2472 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 134.85 91.037 1703400000 262120000 247900000 209560000 0 0 0 165960000 126240000 133820000 0 0 0 83707000 67692000 63473000 0 0 0 101160000 125110000 116660000 0 0 0 11472 549 11168 215906;215907;215908;215909;215910;215911;215912;215913;215914;215915;215916;215917 132574;132575;132576;132577;132578;132579;132580;132581;132582;132583;132584;132585 132584 12 KVTWAASLGDR Unmodified 1202.6408 0.6407708 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 2 1 2 21.439 21.075 2;3 0.000102 5982 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 80.623 64.66 128860000 0 0 0 0 0 0 0 0 0 17599000 13104000 12669000 0 0 0 19463000 23884000 21253000 0 0 0 9393400 4587500 6904600 11473 1338 11169 215918;215919;215920;215921;215922;215923;215924;215925;215926;215927;215928;215929;215930;215931 132586;132587;132588;132589;132590;132591;132592;132593;132594;132595;132596 132587 11 KVVADAIAK Unmodified 913.55967 0.55966693 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 5 4 4 2 1 2 2 3 3 1 1 1 2 1 1 1 1 1 4 4 3 13.022 13.602 2 4.7855E-05 2740 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 152.06 100.27 2589800000 22724000 20781000 21522000 468010000 419900000 446710000 36866000 26774000 35897000 19680000 18137000 19413000 15339000 14549000 15946000 5909900 2385200 1704300 25850000 28912000 29396000 291220000 342230000 259990000 11474 939 11170 215932;215933;215934;215935;215936;215937;215938;215939;215940;215941;215942;215943;215944;215945;215946;215947;215948;215949;215950;215951;215952;215953;215954;215955;215956;215957;215958;215959;215960;215961;215962;215963;215964;215965;215966;215967;215968;215969;215970;215971;215972;215973;215974;215975;215976;215977;215978;215979;215980;215981 132597;132598;132599;132600;132601;132602;132603;132604;132605;132606;132607;132608;132609;132610;132611;132612;132613;132614;132615;132616;132617;132618;132619;132620;132621;132622 132608 26 KVVADIAGVPAQINIAEVR Unmodified 1962.1262 0.12621015 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 39.781 38.088 2;3 6.3459E-14 18501 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 180.62 176.91 3783400000 525210000 413550000 472530000 18752000 3624700 19233000 155240000 162690000 151680000 46806000 49395000 44633000 188220000 164450000 194580000 40380000 30900000 25742000 343840000 336570000 300350000 30450000 32916000 31696000 11475 374 11171 215982;215983;215984;215985;215986;215987;215988;215989;215990;215991;215992;215993;215994;215995;215996;215997;215998;215999;216000;216001;216002;216003;216004;216005;216006;216007;216008;216009;216010;216011;216012;216013;216014;216015;216016;216017;216018;216019;216020;216021;216022;216023;216024;216025;216026 132623;132624;132625;132626;132627;132628;132629;132630;132631;132632;132633;132634;132635;132636;132637;132638;132639;132640;132641;132642;132643;132644;132645;132646;132647;132648;132649;132650;132651;132652;132653;132654;132655;132656;132657;132658;132659;132660 132644 38 KVVDFFVR Unmodified 1008.5757 0.57565135 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.24 26.995 2 0.0011902 12738 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 116.3 111.07 330620000 23570000 29434000 24255000 0 0 0 36657000 35258000 32802000 0 0 0 23186000 20014000 20512000 0 0 0 27279000 28381000 23394000 0 2747800 3131600 11476 1956 11172 216027;216028;216029;216030;216031;216032;216033;216034;216035;216036;216037;216038;216039;216040 132661;132662;132663;132664;132665;132666;132667;132668;132669;132670;132671 132661 11 KVVITATQMLDSMIK Unmodified 1676.9205 0.9204994 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 43.013 41.312 2;3 1.5159E-21 20497 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 273.08 267.36 3475600000 286630000 228000000 248310000 0 0 0 419430000 391500000 360080000 1610600 1442400 1366400 256900000 256890000 228620000 0 0 0 265290000 272030000 257500000 0 0 0 11477 771 11173 216041;216042;216043;216044;216045;216046;216047;216048;216049;216050;216051;216052;216053;216054;216055;216056;216057;216058;216059;216060;216061;216062;216063;216064;216065;216066;216067 132672;132673;132674;132675;132676;132677;132678;132679;132680;132681;132682;132683;132684;132685;132686;132687;132688;132689;132690;132691;132692;132693;132694;132695;132696;132697 132677 26 KVVMTGPSK Oxidation (M) 961.52665 0.52665224 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 4 3 3 2 1 4 4 3 8.4419 9.2667 2 5.1294E-06 1109 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.23 125.53 1031200000 84251000 73149000 72985000 0 0 0 236670000 66821000 211220000 0 0 0 39789000 31760000 31605000 0 0 0 64781000 80959000 37198000 0 0 0 11478 504 11174 216068;216069;216070;216071;216072;216073;216074;216075;216076;216077;216078;216079;216080;216081;216082;216083;216084;216085;216086;216087;216088;216089;216090;216091;216092;216093;216094;216095;216096;216097;216098;216099;216100;216101 132698;132699;132700;132701;132702;132703;132704;132705;132706;132707;132708;132709;132710;132711;132712;132713;132714;132715;132716;132717;132718;132719 132703 308 20 KVVMTGPSK Unmodified 945.53174 0.53173762 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 2 10.801 11.648 2 5.0072E-08 2722 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 195.32 164.09 24679000000 1613300000 1395200000 1636500000 8411000 6949500 0 2683800000 2673500000 2759600000 0 0 0 1833100000 1794700000 1716400000 0 0 0 2140200000 2288200000 2129200000 0 0 0 11479 504 11174 216102;216103;216104;216105;216106;216107;216108;216109;216110;216111;216112;216113;216114;216115;216116;216117 132720;132721;132722;132723;132724;132725;132726;132727;132728;132729;132730;132731;132732;132733;132734 132722 15 KVVNIINAMEPEMEK Unmodified 1743.8899 0.88992755 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 34.183 32.733 2;3 1.97E-08 15494 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 182.25 176.52 424950000 22612000 21548000 27661000 1221300 0 0 24968000 27289000 29490000 15679000 14501000 14607000 25381000 24306000 5360200 18152000 13062000 14048000 29183000 35945000 32175000 8810100 8384000 10564000 11480 1057 11175 216118;216119;216120;216121;216122;216123;216124;216125;216126;216127;216128;216129;216130;216131;216132;216133;216134;216135;216136;216137;216138;216139;216140;216141;216142;216143;216144;216145;216146;216147;216148;216149;216150;216151;216152;216153;216154;216155;216156;216157;216158 132735;132736;132737;132738;132739;132740;132741;132742;132743;132744;132745;132746;132747;132748;132749;132750;132751;132752;132753;132754;132755;132756;132757;132758;132759;132760;132761;132762 132756 28 KVVPMLDK Unmodified 928.54157 0.54157402 1082 P13001 bioH Pimeloyl-[acyl-carrier protein] methyl ester esterase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.293 16.1 2 0.011344 5071 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 80.684 59.002 89536000 8276500 8381800 5195500 0 0 0 5812900 6711300 6581400 0 0 0 8394500 6478600 5925000 0 0 0 7455200 9527700 10795000 0 0 0 11481 1082 11176 216159;216160;216161;216162;216163;216164;216165;216166;216167;216168;216169;216170 132763 132763 1 KVVWPDLDDAQR Unmodified 1440.7361 0.73612775 1456 P37095 pepB Peptidase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 2 1 1 1 1 1 2 1 2 2 2 1 2 1 29.822 28.327 2;3 5.4234E-08 12955 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.66 149.44 793000000 34049000 39240000 28659000 0 0 1083300 12225000 110050000 71781000 2960900 2386200 1671600 36176000 94109000 35237000 0 0 0 106340000 110780000 98344000 2386000 3216200 2310500 11482 1456 11177 216171;216172;216173;216174;216175;216176;216177;216178;216179;216180;216181;216182;216183;216184;216185;216186;216187;216188;216189;216190;216191;216192;216193;216194;216195;216196 132764;132765;132766;132767;132768;132769;132770;132771;132772;132773;132774;132775;132776;132777 132774 11 KVYAAIEAGDK Unmodified 1163.6186 0.61863837 372 P0A7U7 rpsT 30S ribosomal protein S20 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.203 13.805 2 0.00014066 4208 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 117.52 98.789 391250000 33573000 34734000 38093000 1298900 0 0 18320000 18527000 17611000 3316000 2043600 2662800 29093000 23740000 22385000 1925400 0 1332200 54697000 46977000 37894000 1533500 1495200 0 11483 372 11178 216197;216198;216199;216200;216201;216202;216203;216204;216205;216206;216207;216208;216209;216210;216211;216212;216213;216214;216215;216216 132778;132779;132780;132781;132782;132783;132784;132785;132786;132787;132788 132785 9 KVYLASAAPEIR Unmodified 1316.7452 0.74523587 978 P0AG16 purF Amidophosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.6 21.768 3 0.014566 8880 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 49.732 38.519 87715000 18030000 21077000 14561000 0 0 0 0 0 0 0 0 0 4568600 4428300 2884900 0 0 0 9517800 6736400 5910400 0 0 0 11484 978 11179 216217;216218;216219;216220;216221;216222;216223;216224;216225 132789;132790;132791 132789 3 KVYTDVSYLACAK Unmodified 1516.7596 0.7595653 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 3 2 3 2 2 1 2 1 1 2 2 2 3 3 3 24.488 23.51 2;3 1.1185E-08 10282 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 162.68 145.21 426520000 14751000 12577000 12970000 13814000 13251000 15148000 12334000 9358000 12603000 20059000 18970000 18515000 9810900 10962000 4850600 7141600 4066000 4883600 35212000 32101000 30354000 39237000 38581000 34967000 11485 215 11180 216226;216227;216228;216229;216230;216231;216232;216233;216234;216235;216236;216237;216238;216239;216240;216241;216242;216243;216244;216245;216246;216247;216248;216249;216250;216251;216252;216253;216254;216255;216256;216257;216258;216259;216260;216261;216262;216263;216264;216265;216266;216267;216268;216269;216270;216271;216272;216273;216274;216275;216276;216277;216278 132792;132793;132794;132795;132796;132797;132798;132799;132800;132801;132802;132803;132804;132805;132806;132807;132808;132809;132810;132811;132812;132813;132814;132815;132816;132817;132818 132810 26 KWDDEAIAK Unmodified 1074.5346 0.53457439 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.868 15.71 2 7.219E-06 4988 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 172.59 125.53 632380000 0 5510900 4433600 785570 645660 632310 70262000 61279000 67579000 0 0 0 68667000 70958000 73387000 0 0 0 71701000 69238000 67297000 0 0 0 11486 994 11181 216279;216280;216281;216282;216283;216284;216285;216286;216287;216288;216289;216290;216291;216292 132819;132820;132821;132822;132823;132824;132825;132826;132827 132825 9 KWDLGDIIGAR Unmodified 1242.6721 0.67207093 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 41.913 40.103 2;3 5.4171E-05 19931 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 116.55 105.01 1304900000 110420000 116100000 91134000 0 0 0 203830000 184400000 170220000 877190 641420 1084400 67511000 61433000 77548000 0 0 0 75139000 75017000 69119000 425790 0 0 11487 449 11182 216293;216294;216295;216296;216297;216298;216299;216300;216301;216302;216303;216304;216305;216306;216307;216308;216309;216310;216311;216312;216313;216314;216315;216316;216317;216318;216319;216320 132828;132829;132830;132831;132832;132833;132834;132835;132836;132837;132838;132839;132840;132841;132842;132843;132844;132845;132846;132847;132848;132849;132850;132851 132831 23 KWDLGDILGAK Unmodified 1214.6659 0.66592292 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.932 41.375 2;3 3.5538E-14 19211 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 211.86 190.4 1319400000 88742000 81801000 90432000 0 0 0 164090000 124960000 119030000 0 0 0 91571000 77335000 89459000 0 0 0 131180000 131490000 129340000 0 0 0 11488 448 11183 216321;216322;216323;216324;216325;216326;216327;216328;216329;216330;216331;216332;216333;216334;216335;216336;216337;216338;216339;216340;216341;216342;216343;216344 132852;132853;132854;132855;132856;132857;132858;132859;132860;132861;132862;132863;132864;132865;132866;132867;132868;132869;132870;132871;132872;132873;132874;132875;132876 132876 25 KWDMQFAPSICQQCSIGCNISPGER Unmodified 2968.3088 0.30883703 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 41.312 39.622 3 1.756E-30 19555 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 184.3 182.07 442800000 12047000 11174000 10132000 5905800 9454200 9039100 29833000 26807000 25156000 14423000 13648000 10240000 25607000 30162000 23551000 4581400 4110800 0 49188000 52184000 45766000 9324200 10955000 9511600 11489 1427 11184 216345;216346;216347;216348;216349;216350;216351;216352;216353;216354;216355;216356;216357;216358;216359;216360;216361;216362;216363;216364;216365;216366;216367;216368 132877;132878;132879;132880;132881;132882;132883;132884;132885;132886;132887;132888;132889;132890;132891;132892;132893;132894;132895;132896;132897;132898 132883 22 KWEPGMAEEETR Unmodified 1461.6558 0.65582851 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 15.83 16.591 2;3 1.0737E-08 5774 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.86 172.88 1027400000 103600000 120120000 83791000 0 0 503060 76037000 80241000 69471000 0 0 0 73112000 67278000 67129000 0 1693100 1787100 99847000 90484000 92267000 0 0 0 11490 1144 11185 216369;216370;216371;216372;216373;216374;216375;216376;216377;216378;216379;216380;216381;216382;216383;216384;216385;216386;216387;216388;216389;216390;216391;216392;216393;216394;216395 132899;132900;132901;132902;132903;132904;132905;132906;132907;132908;132909;132910;132911 132905 13 KWFGTEPK Unmodified 991.51272 0.51271674 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 14.608 15.434 2 0.0029152 5238 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.43 87.018 70303000 22717000 0 0 0 0 0 0 0 0 0 0 0 8954100 10476000 8840000 0 0 0 7405300 6026500 5884600 0 0 0 11491 877 11186 216396;216397;216398;216399;216400;216401;216402 132912;132913;132914;132915 132912 4 KWTDQSGQDR Unmodified 1219.5582 0.55816338 1010 P0AGE0 ssb Single-stranded DNA-binding protein yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.644 11.46 2 4.5191E-09 2723 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 195.79 173.55 301280000 36833000 49898000 49077000 0 0 0 20821000 17209000 25066000 0 0 0 9849700 13030000 14143000 0 0 0 22777000 19542000 23030000 0 0 0 11492 1010 11187 216403;216404;216405;216406;216407;216408;216409;216410;216411;216412;216413;216414 132916;132917;132918;132919 132916 4 KYAALCDVFVMDAFGTAHR Unmodified 2171.0292 0.029214998 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 3 2 2 2 2 2 3 3 43.833 42.31 3;4 1.5846E-29 20670 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.77 157.02 2799800000 234390000 194990000 163030000 0 0 816160 380130000 334640000 342930000 0 0 0 177490000 155480000 155380000 0 0 0 225130000 222940000 212430000 0 0 0 11493 321 11188 216415;216416;216417;216418;216419;216420;216421;216422;216423;216424;216425;216426;216427;216428;216429;216430;216431;216432;216433;216434;216435;216436;216437;216438;216439;216440;216441;216442 132920;132921;132922;132923;132924;132925;132926;132927;132928;132929;132930;132931;132932;132933;132934;132935;132936;132937;132938;132939;132940;132941;132942;132943;132944;132945 132935 25 KYCTPNVFDAK Unmodified 1341.6387 0.63872189 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 20.514 20.713 2;3 0.0015327 6052 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 93.258 86.953 622490000 98447000 94942000 77648000 21122000 20482000 20705000 26737000 28620000 20345000 22692000 15731000 13272000 15912000 11470000 8750100 0 0 0 41454000 38855000 42185000 0 1930600 1189300 11494 1211 11189 216443;216444;216445;216446;216447;216448;216449;216450;216451;216452;216453;216454;216455;216456;216457;216458;216459;216460;216461;216462;216463;216464;216465;216466;216467;216468;216469;216470;216471;216472;216473;216474;216475 132946;132947;132948;132949;132950;132951;132952;132953;132954;132955;132956;132957;132958;132959;132960;132961;132962;132963;132964;132965;132966;132967;132968 132958 20 KYDFSTPYTISGIQALVK Unmodified 2030.0724 0.072443247 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.853 46.438 2;3 3.1878E-45 23001 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 264.3 235.01 1473900000 175750000 163190000 173290000 0 0 0 137160000 126520000 122380000 0 0 0 91944000 88813000 83871000 0 0 0 106820000 116800000 87333000 0 0 0 11495 874 11190 216476;216477;216478;216479;216480;216481;216482;216483;216484;216485;216486;216487;216488;216489;216490;216491;216492;216493;216494;216495;216496;216497;216498;216499 132969;132970;132971;132972;132973;132974;132975;132976;132977;132978;132979;132980;132981;132982;132983;132984;132985;132986;132987;132988;132989;132990 132972 22 KYDHPELIVDESNLR Unmodified 1826.9163 0.91627696 110 P05458 ptrA Protease 3 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 25.639 24.567 3;4 4.3483E-06 11079 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.887 69.785 230730000 19907000 19266000 18462000 0 0 0 22324000 23731000 19688000 0 0 0 14539000 15853000 10472000 0 0 0 23798000 24715000 17980000 0 0 0 11496 110 11191 216500;216501;216502;216503;216504;216505;216506;216507;216508;216509;216510;216511;216512;216513;216514;216515;216516;216517;216518;216519;216520;216521;216522;216523 132991;132992;132993;132994;132995 132992 1 KYDIPVVMDSAR Oxidation (M) 1408.7021 0.70205043 397 P0A853 tnaA Tryptophanase yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 4 4 4 1 5 4 4 2 4 2 1 2 3 2 24.547 23.681 2;3 5.5729E-05 9713 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.11 105.29 555070000 89776000 97952000 91800000 390930 0 0 75276000 62106000 49256000 0 0 0 11597000 21349000 13902000 0 924230 0 14304000 15096000 11345000 0 0 0 11497 397 11192 216524;216525;216526;216527;216528;216529;216530;216531;216532;216533;216534;216535;216536;216537;216538;216539;216540;216541;216542;216543;216544;216545;216546;216547;216548;216549;216550;216551;216552;216553;216554;216555;216556;216557;216558;216559;216560;216561;216562;216563;216564;216565 132996;132997;132998;132999;133000;133001;133002;133003;133004;133005;133006;133007;133008;133009;133010;133011;133012;133013 133005 188 17 KYDIPVVMDSAR Unmodified 1392.7071 0.7071358 397 P0A853 tnaA Tryptophanase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 1 29.603 28.322 2;3 1.423E-08 13346 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 174.4 153.7 27449000000 4660900000 4272500000 4222600000 27913000 24748000 29823000 2375000000 2275800000 2238700000 17144000 13904000 11123000 1252700000 1232300000 1100200000 41198000 36736000 31777000 1158800000 1186000000 1231600000 0 7204900 0 11498 397 11192 216566;216567;216568;216569;216570;216571;216572;216573;216574;216575;216576;216577;216578;216579;216580;216581;216582;216583;216584;216585;216586;216587;216588;216589;216590;216591;216592;216593;216594;216595;216596;216597;216598;216599;216600;216601;216602;216603;216604;216605;216606 133014;133015;133016;133017;133018;133019;133020;133021;133022;133023;133024;133025;133026;133027;133028;133029;133030;133031;133032;133033;133034;133035;133036;133037;133038;133039 133016 26 KYDMDLVVCGHHQDFWSK Unmodified 2264.0143 0.014293216 847 P0AED0 uspA Universal stress protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 4 4 3 2 3 4 4 4 2 3 3 4 4 4 1 1 4 4 4 1 2 1 31.43 29.956 2;3;4;5 1.2238E-36 14464 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 276.12 276.12 8262900000 939830000 782730000 682760000 47421000 43754000 59934000 1032000000 1062100000 985300000 68425000 76808000 64728000 366960000 453810000 362720000 1592200 0 1158900 423030000 390110000 380270000 9274100 16305000 11914000 11499 847 11193 216607;216608;216609;216610;216611;216612;216613;216614;216615;216616;216617;216618;216619;216620;216621;216622;216623;216624;216625;216626;216627;216628;216629;216630;216631;216632;216633;216634;216635;216636;216637;216638;216639;216640;216641;216642;216643;216644;216645;216646;216647;216648;216649;216650;216651;216652;216653;216654;216655;216656;216657;216658;216659;216660;216661;216662;216663;216664;216665;216666;216667;216668;216669;216670;216671;216672;216673;216674;216675;216676 133040;133041;133042;133043;133044;133045;133046;133047;133048;133049;133050;133051;133052;133053;133054;133055;133056;133057;133058;133059;133060;133061;133062;133063;133064;133065;133066;133067;133068;133069;133070;133071;133072;133073;133074;133075;133076;133077;133078;133079;133080;133081;133082;133083;133084;133085;133086;133087;133088;133089;133090 133046 51 KYDMDYCCGGK Unmodified 1395.5257 0.52574232 1737 P69506 ytfE Iron-sulfur cluster repair protein YtfE yes yes 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 13.573 14.402 2 0.038374 4510 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 54.094 51.256 18811000 0 0 0 0 0 0 5314800 5701200 6022300 0 0 0 0 1772800 0 0 0 0 0 0 0 0 0 0 11500 1737 11194 216677;216678;216679;216680 133091 133091 1 KYDWVVSLR Unmodified 1164.6291 0.62914348 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 32.429 31.06 2;3 4.8998E-05 14019 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 171.99 165.09 3029200000 229700000 192600000 184980000 0 0 0 223430000 197940000 186380000 0 0 3370000 285290000 280970000 273550000 0 0 0 315200000 324300000 331460000 0 0 0 11501 86 11195 216681;216682;216683;216684;216685;216686;216687;216688;216689;216690;216691;216692;216693;216694;216695;216696;216697;216698;216699;216700;216701;216702;216703;216704;216705 133092;133093;133094;133095;133096;133097;133098;133099;133100;133101;133102;133103;133104;133105;133106;133107;133108;133109;133110;133111;133112 133110 21 KYEDEINKR Unmodified 1193.6041 0.60405094 17;3 CON__P35908;CON__ENSEMBL:ENSBTAP00000038253 no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 2 2 2 10.87 11.439 2;3 5.9496E-11 2211 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 218.63 199.53 145350000 0 0 0 10912000 13021000 14236000 0 0 0 0 8070000 8191600 0 0 0 0 0 3285900 0 0 0 34765000 28440000 24433000 + 11502 17;3 11196 216706;216707;216708;216709;216710;216711;216712;216713;216714;216715;216716;216717;216718;216719;216720;216721;216722 133113;133114;133115;133116;133117;133118;133119;133120;133121;133122;133123;133124 133118 12 KYEQEIDVR Unmodified 1178.5932 0.5931519 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 3 2 3 2 2 2 3 3 3 2 1 2 3 2 2 13.825 14.299 2;3 1.0988E-15 3561 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 228.05 187.98 3955800000 93266000 77939000 72059000 0 600250 0 44835000 44590000 44804000 196780000 177350000 184040000 63646000 56993000 50655000 457330000 673400000 456310000 73126000 56754000 80102000 384540000 349850000 316820000 11503 935 11197 216723;216724;216725;216726;216727;216728;216729;216730;216731;216732;216733;216734;216735;216736;216737;216738;216739;216740;216741;216742;216743;216744;216745;216746;216747;216748;216749;216750;216751;216752;216753;216754;216755;216756;216757;216758;216759;216760;216761;216762;216763;216764;216765;216766;216767;216768;216769;216770 133125;133126;133127;133128;133129;133130;133131;133132;133133;133134;133135;133136;133137;133138;133139;133140;133141;133142;133143 133130 19 KYFDFDVYGG Unmodified 1209.5342 0.53424004 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.937 42.407 2 0.0046008 20773 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 71.692 69.013 138010000 28010000 22068000 21737000 0 0 0 10217000 9209700 8765300 0 0 0 0 4732500 6583800 0 0 0 10843000 7721500 8121400 0 0 0 11504 887 11198 216771;216772;216773;216774;216775;216776;216777;216778;216779;216780;216781 133144;133145;133146;133147;133148;133149 133145 6 KYFDFNVYGD Unmodified 1266.5557 0.55570376 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 1 1 43.468 41.969 2 0.00073959 20426 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.162 90.326 355050000 115850000 101370000 100680000 0 0 0 4426800 3311600 2714200 0 0 0 3009900 3186200 4031400 0 0 0 5192400 6296300 4982400 0 0 0 11505 217 11199 216782;216783;216784;216785;216786;216787;216788;216789;216790;216791;216792;216793;216794 133150;133151;133152 133151 3 KYFGTDGIR Unmodified 1055.54 0.53999412 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.324 17.059 2 0.00027094 5594 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 145.34 105.68 337880000 22083000 19194000 14993000 0 0 0 30808000 30283000 32043000 1593500 0 0 29685000 24162000 26846000 0 0 0 41685000 29981000 34520000 0 0 0 11506 1360 11200 216795;216796;216797;216798;216799;216800;216801;216802;216803;216804;216805;216806;216807 133153;133154;133155;133156;133157 133156 5 KYFPDATILALTTNEK Unmodified 1823.9669 0.96691554 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.817 40.119 2;3 2.9588E-13 19721 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 190.86 175.47 2376100000 176290000 183900000 165580000 0 0 0 256430000 240020000 223520000 0 0 0 166110000 166630000 166320000 0 0 0 211680000 212210000 207480000 0 0 0 11507 771 11201 216808;216809;216810;216811;216812;216813;216814;216815;216816;216817;216818;216819;216820;216821;216822;216823;216824;216825;216826;216827;216828;216829;216830;216831 133158;133159;133160;133161;133162;133163;133164;133165;133166;133167;133168;133169;133170;133171;133172;133173;133174;133175;133176;133177;133178 133165 21 KYHPDVSKEPDAEAR Unmodified 1740.8431 0.84311201 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 11.019 11.788 2;4 0.00017565 2457 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 56.527 55.342 777230000 66527000 56848000 7690600 4668900 4183700 4732400 175140000 178330000 177640000 9898300 9639400 0 17408000 15144000 9904800 0 0 0 13018000 12847000 13617000 0 0 0 11508 1440 11202 216832;216833;216834;216835;216836;216837;216838;216839;216840;216841;216842;216843;216844;216845;216846;216847;216848;216849;216850;216851;216852;216853 133179;133180;133181;133182 133179 4 KYINIGVAVDTPNGLVVPVFK Unmodified 2242.2725 0.27254004 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 3 4 2 2 2 2 2 2 1 2 1 1 1 1 2 2 2 3 3 3 50.114 48.782 2;3;4 5.0746E-35 19403 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 279.44 278.73 4958500000 47824000 38405000 29825000 642990000 643290000 685190000 53229000 51924000 46222000 91518000 76995000 77757000 18021000 24520000 19616000 15846000 13571000 23374000 59074000 57914000 53650000 705860000 720840000 761070000 11509 133 11203 216854;216855;216856;216857;216858;216859;216860;216861;216862;216863;216864;216865;216866;216867;216868;216869;216870;216871;216872;216873;216874;216875;216876;216877;216878;216879;216880;216881;216882;216883;216884;216885;216886;216887;216888;216889;216890;216891;216892;216893;216894;216895;216896;216897;216898;216899;216900;216901;216902;216903;216904 133183;133184;133185;133186;133187;133188;133189;133190;133191;133192;133193;133194;133195;133196;133197;133198;133199;133200;133201;133202;133203;133204;133205;133206;133207;133208;133209;133210;133211;133212;133213;133214;133215;133216;133217;133218;133219 133193 37 KYINIGVAVDTPNGLVVPVFKDVNK Unmodified 2698.5058 0.50578745 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 46.202 44.551 4 0.0016894 15917 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 58.345 57.593 36424000 0 0 0 9472900 10761000 7561800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5791700 2836600 11510 133 11204 216905;216906;216907;216908;216909 133220;133221;133222 133220 3 KYIVALDQGTTSSR Unmodified 1537.81 0.81002097 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 1 2 1 19.601 19.926 2;3 3.6404E-14 7668 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 221.6 214.23 2334100000 40636000 40336000 37185000 1348500 1149800 1025700 267830000 258420000 286510000 2222600 1548700 1378200 254060000 227820000 214270000 1603600 1880100 1787900 268670000 226340000 189960000 2801300 3610300 1713900 11511 239 11205 216910;216911;216912;216913;216914;216915;216916;216917;216918;216919;216920;216921;216922;216923;216924;216925;216926;216927;216928;216929;216930;216931;216932;216933;216934;216935;216936;216937;216938;216939;216940;216941;216942;216943;216944;216945;216946;216947 133223;133224;133225;133226;133227;133228;133229;133230;133231;133232;133233;133234;133235;133236;133237;133238;133239;133240;133241;133242;133243 133233 20 KYLLASLDQSLK Unmodified 1377.7868 0.78676633 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 33.19 31.68 3 0.0003914 15041 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 79.492 79.492 76449000 18614000 14999000 12290000 0 0 0 12165000 6257400 5192300 0 0 0 0 2772200 0 0 0 0 4158500 0 0 0 0 0 11512 1958 11206 216948;216949;216950;216951;216952;216953;216954;216955 133244;133245 133244 2 KYNVDIQIK Unmodified 1119.6288 0.62880913 1801 P76002 pliG Inhibitor of g-type lysozyme yes yes 0 0 1 By MS/MS 1 19.892 20.438 2 0.00084333 7909 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.2 88.758 5528200 0 0 5528200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11513 1801 11207 216956 133246 133246 1 KYNVPVVLTLGTK Unmodified 1430.8497 0.84970094 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.098 32.65 2;3 2.0735E-05 14894 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 70.806 68.898 246590000 20694000 17620000 15826000 0 0 0 18774000 20016000 17324000 0 0 0 17803000 16785000 17148000 0 0 0 28774000 29160000 26669000 0 0 0 11514 891 11208 216957;216958;216959;216960;216961;216962;216963;216964;216965;216966;216967;216968;216969;216970;216971;216972;216973;216974;216975;216976;216977;216978;216979;216980 133247;133248;133249;133250;133251;133252 133252 6 KYRPETDMADLDNFDAAK Unmodified 2098.963 0.96296915 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.879 25.732 3 1.1688E-06 11594 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 78.661 76.398 139810000 13952000 11593000 10597000 0 0 0 19101000 21214000 20485000 0 0 0 7296900 6871900 7265300 0 0 0 5871000 8055600 7509700 0 0 0 11515 449 11209 216981;216982;216983;216984;216985;216986;216987;216988;216989;216990;216991;216992 133253;133254;133255;133256 133256 2 KYRPETDMADLDNFDSAK Unmodified 2114.9579 0.95788377 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.933 24.843 3 0.1631 11168 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 34.396 25.349 158720000 15096000 9359000 9787300 0 0 0 12905000 14525000 9762400 0 0 0 13209000 11718000 11503000 0 0 0 16464000 18076000 16320000 0 0 0 11516 448 11210 216993;216994;216995;216996;216997;216998;216999;217000;217001;217002;217003;217004 133257 133257 0 KYSSEQFR Unmodified 1043.5036 0.50360861 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.799 11.943 2 2.7332E-06 2500 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 187.55 178.31 6484300000 0 0 0 0 0 0 0 0 0 762320000 782640000 887170000 0 0 0 1005200000 900380000 746400000 0 0 0 488630000 450420000 461100000 11517 1616 11211 217005;217006;217007;217008;217009;217010;217011;217012;217013 133258;133259;133260;133261;133262;133263;133264;133265;133266 133259 9 KYTIDLTER Unmodified 1137.603 0.60298831 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 1 2 1 2 20.286 20.665 2;3 0.0012594 7972 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.82 104.17 214060000 24048000 25186000 20689000 0 0 0 24121000 28237000 26340000 0 0 0 15779000 10922000 5331800 0 0 0 14048000 8076500 11284000 0 0 0 11518 1662 11212 217014;217015;217016;217017;217018;217019;217020;217021;217022;217023;217024;217025;217026;217027;217028;217029;217030;217031;217032;217033;217034;217035 133267;133268;133269;133270 133270 4 LAAALEQGSSHPLAR Unmodified 1519.8107 0.81068967 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 2 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 2 1 18.066 18.486 2;3 3.4619E-07 5569 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 123.02 121.65 205880000 7120000 7254700 8771500 4462900 5345100 4269600 30490000 35603000 30426000 13332000 9539400 12663000 3500700 5333000 5094100 0 0 0 6088300 6150700 5718200 1621500 1876100 1218100 11519 1980 11213 217036;217037;217038;217039;217040;217041;217042;217043;217044;217045;217046;217047;217048;217049;217050;217051;217052;217053;217054;217055;217056;217057;217058;217059;217060;217061;217062;217063;217064;217065;217066 133271;133272;133273;133274;133275;133276;133277;133278;133279 133273 9 LAAALIGADGQIR Unmodified 1267.7248 0.72483478 1567 P45425 nanK N-acetylmannosamine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.4 31.96 2 7.566E-06 15126 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.95 140.02 102810000 14387000 15937000 13870000 0 0 0 5969100 4461600 4949600 0 0 0 7599600 6657000 7429800 0 0 0 8022400 6732200 6795600 0 0 0 11520 1567 11214 217067;217068;217069;217070;217071;217072;217073;217074;217075;217076;217077;217078 133280;133281;133282 133281 3 LAAALLPLLANGK Unmodified 1263.7915 0.79145778 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 50.328 48.877 2 0.0010394 19934 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.042 72.042 26209000 0 0 0 1038200 0 1114300 0 0 0 7450900 5279000 6403500 0 0 0 0 0 0 0 1587000 0 0 0 3336500 11521 1058 11215 217079;217080;217081;217082;217083;217084;217085 133283 133283 0 LAACATLIPGATSLYYWEGK Unmodified 2184.0925 0.092526762 1735 P69488 cutA Divalent-cation tolerance protein CutA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.116 51.691 2 3.1733E-14 25559 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.1 135.39 93130000 22260000 15923000 17337000 0 0 0 0 7784300 4884900 0 0 0 4217500 4784600 3976900 0 0 0 4983200 3426800 3551900 0 0 0 11522 1735 11216 217086;217087;217088;217089;217090;217091;217092;217093;217094;217095;217096 133284 133284 1 LAACFLDSMATVGQSATGYGLNYQYGLFR Unmodified 3173.495 0.49504112 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.999 53.826 3 4.972E-24 21621 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 179.17 177.06 259530000 10510000 10312000 9555500 0 0 0 0 0 0 28388000 24169000 25433000 10361000 10014000 0 11176000 16018000 15490000 25045000 24558000 25356000 6753400 0 6391800 11523 30 11217 217097;217098;217099;217100;217101;217102;217103;217104;217105;217106;217107;217108;217109;217110;217111;217112 133285;133286;133287;133288 133287 3 LAADDFR Unmodified 806.39227 0.39226725 13;6;12;7;4;18 CON__P13645;CON__Q7Z3Y7;CON__Q148H6;CON__Q2M2I5;CON__Q92764;CON__Q14532;CON__O76015;CON__O76013;CON__P02535-1;CON__P02533;CON__Q04695;CON__Q9QWL7;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08779;CON__ENSEMBL:ENSP00000377550;CON__Q14525;CON__Q9UE12;CON__Q15323;CON__Q497I4;CON__A2A5Y0;CON__REFSEQ:XP_986630 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.181 19.289 2 0.0015084 5448 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 128.75 87.834 543940000 0 0 0 36951000 35873000 37870000 2409500 1606000 0 56669000 40801000 42698000 0 0 0 13731000 10255000 15408000 0 0 0 84958000 88253000 76455000 + 11524 13;7;6;12;4;18 11218 217113;217114;217115;217116;217117;217118;217119;217120;217121;217122;217123;217124;217125;217126 133289;133290;133291;133292;133293;133294;133295;133296;133297;133298;133299;133300 133290 12 LAADVTGVPTLLVAR Unmodified 1494.877 0.87697832 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 2 1 2 2 2 1 2 2 2 46.628 45.142 2;3 3.7488E-20 20957 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 211.46 209.15 31102000000 7648800000 8114400000 6269900000 21728000 23844000 2118000 1612000000 1457400000 1385500000 3863600 6110400 4222800 611300000 531410000 536310000 0 1408000 0 942740000 1007300000 921710000 0 0 0 11525 517 11219 217127;217128;217129;217130;217131;217132;217133;217134;217135;217136;217137;217138;217139;217140;217141;217142;217143;217144;217145;217146;217147;217148;217149;217150;217151;217152;217153;217154;217155;217156;217157;217158;217159;217160 133301;133302;133303;133304;133305;133306;133307;133308;133309;133310;133311;133312;133313;133314;133315;133316;133317;133318;133319;133320;133321;133322;133323;133324;133325;133326;133327;133328;133329;133330;133331;133332;133333;133334;133335;133336 133335 36 LAAEELQLPTSTYR Unmodified 1590.8253 0.82533668 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.443 35.736 2 3.2086E-27 17330 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 246.14 246.14 393480000 117680000 123430000 114440000 616680 847700 742670 2950000 3977200 5774300 0 0 0 7027100 0 4608900 0 0 0 5131200 0 6265200 0 0 0 11526 1412 11220 217161;217162;217163;217164;217165;217166;217167;217168;217169;217170;217171;217172;217173 133337;133338;133339 133337 3 LAAEEQAQR Unmodified 1014.5094 0.50942227 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.149 11.721 2 3.4572E-11 2966 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 208.59 172.71 1016600000 107780000 97494000 120410000 0 4583700 5218500 45218000 42121000 39725000 30843000 26396000 25098000 70161000 63623000 66240000 24711000 31869000 32665000 45350000 55794000 57935000 7430900 7775600 8145400 11527 297 11221 217174;217175;217176;217177;217178;217179;217180;217181;217182;217183;217184;217185;217186;217187;217188;217189;217190;217191;217192;217193;217194;217195;217196 133340;133341;133342;133343;133344;133345;133346;133347;133348;133349;133350;133351;133352;133353;133354;133355;133356 133352 17 LAAEGHFAEAR Unmodified 1170.5782 0.57817054 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 13.162 14.028 2;3 4.6064E-08 4337 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 177.06 142.81 2866100000 287570000 282360000 227550000 0 0 0 332680000 259450000 257240000 0 0 0 102260000 248550000 222570000 0 0 0 254700000 270700000 120450000 0 0 0 11528 258 11222 217197;217198;217199;217200;217201;217202;217203;217204;217205;217206;217207;217208;217209;217210;217211;217212;217213;217214;217215;217216;217217;217218;217219;217220 133357;133358;133359;133360;133361;133362;133363;133364;133365;133366;133367 133363 11 LAAEQAPTGR Unmodified 1012.5302 0.53015772 160 P07363 cheA Chemotaxis protein CheA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 11.822 12.748 2 0.00058265 2703 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 93.649 87.01 87574000 0 21495000 15616000 5248000 6361200 644690 0 0 0 0 0 0 0 0 0 0 0 0 38210000 0 0 0 0 0 11529 160 11223 217221;217222;217223;217224;217225;217226 133368;133369 133368 2 LAAEQGR Unmodified 743.3926 0.3926016 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 1 1 1 2 2 1 1 1 2 3 8.5305 9.3788 2 0.0006293 2402 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 149.06 74.228 741900000 152610000 124130000 95144000 210810 483690 0 38685000 30881000 32624000 0 0 0 36705000 35846000 27467000 0 0 0 48738000 56412000 61966000 0 0 0 11530 561 11224 217227;217228;217229;217230;217231;217232;217233;217234;217235;217236;217237;217238;217239;217240;217241;217242;217243;217244;217245;217246;217247 133370;133371;133372;133373;133374;133375;133376;133377;133378;133379 133375 10 LAAETIDVSLPGR Unmodified 1340.73 0.72997974 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 36.796 35.121 2;3 2.7026E-12 17317 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 218.52 181.83 3781500000 321580000 342400000 299340000 1116500 985350 1146200 280680000 260420000 240730000 1905800 1717700 1791100 289540000 304590000 301140000 1851600 0 537640 376570000 357550000 392010000 1411600 1349200 1168600 11531 183 11225 217248;217249;217250;217251;217252;217253;217254;217255;217256;217257;217258;217259;217260;217261;217262;217263;217264;217265;217266;217267;217268;217269;217270;217271;217272;217273;217274;217275;217276;217277;217278;217279;217280;217281;217282 133380;133381;133382;133383;133384;133385;133386;133387;133388;133389;133390;133391;133392;133393;133394;133395;133396;133397;133398 133380 19 LAAETIDVSLPGRR Unmodified 1496.8311 0.83109076 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 3 29.951 28.631 3 3.0661E-06 12896 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 85.457 78.418 264230000 22380000 29511000 19159000 1913400 2041400 2831200 20707000 21062000 20047000 0 0 0 15494000 23386000 14947000 0 0 0 18974000 18439000 33339000 0 0 0 11532 183 11226 217283;217284;217285;217286;217287;217288;217289;217290;217291;217292;217293;217294;217295;217296;217297;217298;217299;217300;217301;217302;217303;217304;217305;217306;217307;217308;217309;217310 133399;133400;133401;133402;133403;133404;133405;133406 133404 4 LAAEVLEMIEPYVKPGVSTGELDR Unmodified 2615.3517 0.35165457 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 53.871 52.442 3 2.605E-30 25530 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 182.77 175.66 1135300000 126410000 115530000 106140000 2223100 0 0 88279000 75063000 66432000 0 0 0 82223000 68991000 72458000 0 0 0 107130000 117450000 107020000 0 0 0 11533 829 11227 217311;217312;217313;217314;217315;217316;217317;217318;217319;217320;217321;217322;217323 133407;133408;133409;133410;133411;133412;133413;133414;133415;133416;133417;133418 133412 12 LAAFIYNLSR Unmodified 1166.6448 0.64479354 513 P0A9E5 fnr Fumarate and nitrate reduction regulatory protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.142 39.91 2 7.0202E-05 14710 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 154.49 125.33 165940000 13253000 12777000 11018000 0 4601300 4594300 0 0 0 0 0 0 5043900 7036300 6148300 26375000 22933000 22042000 0 9814700 13543000 0 6764300 0 11534 513 11228 217324;217325;217326;217327;217328;217329;217330;217331;217332;217333;217334;217335;217336;217337 133419;133420;133421;133422;133423 133419 3 LAAGANALDTSR Unmodified 1158.5993 0.59929991 1478 P37637 mdtF Multidrug resistance protein MdtF yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 17.557 17.955 2 0.039393 4816 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 56.548 51.974 60625000 0 5723000 0 2227200 1982300 2392900 10139000 11498000 10783000 5305100 5425500 5148300 0 0 0 0 0 0 0 0 0 0 0 0 11535 1478 11229 217338;217339;217340;217341;217342;217343;217344;217345;217346;217347 133424;133425 133424 1 LAAGDMIPADLR Unmodified 1241.6438 0.64380726 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.921 37.298 2 2.103E-05 18053 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.83 107.42 823910000 0 0 0 0 0 0 9223300 8517500 7053700 4137300 4183700 3100100 195490000 189800000 182610000 27272000 19533000 16978000 43762000 42004000 39059000 9113400 11676000 10393000 11536 647 11230 217348;217349;217350;217351;217352;217353;217354;217355;217356;217357;217358;217359;217360;217361;217362;217363;217364;217365 133426;133427;133428;133429;133430;133431;133432;133433;133434;133435;133436 133431 10 LAAGIDLGTTNSLVATVR Unmodified 1770.984 0.98396259 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 45.401 43.682 2 2.0501E-17 21301 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.99 161.41 38316000 0 0 1890800 0 0 0 6156000 5471700 5953800 1647000 0 1833300 0 3804800 0 0 0 0 6536300 0 5021800 0 0 0 11537 294 11231 217366;217367;217368;217369;217370;217371;217372;217373;217374 133437;133438;133439 133439 3 LAAGITR Unmodified 700.42317 0.42317345 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 13.745 14.42 2 0.040602 4245 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.757 19.784 443800000 54334000 43670000 46225000 429800 3262900 3394500 31898000 25969000 23304000 7840400 4478900 8011800 21697000 27119000 19929000 726200 0 1294900 46217000 24846000 45253000 0 3410900 484940 11538 505 11232 217375;217376;217377;217378;217379;217380;217381;217382;217383;217384;217385;217386;217387;217388;217389;217390;217391;217392;217393;217394;217395;217396;217397;217398;217399;217400;217401 133440;133441;133442;133443;133444 133440 5 LAAGLNSENALSNEAMER Unmodified 1888.8949 0.89488959 1263 P25552 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 31.058 29.733 2 4.9167E-18 13986 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 178.58 172.74 73862000 10661000 8878400 6500600 0 0 0 4237200 4257900 0 0 0 0 5601200 5513400 5648600 0 0 0 7678200 5134300 9752000 0 0 0 11539 1263 11233 217402;217403;217404;217405;217406;217407;217408;217409;217410;217411;217412 133445;133446;133447;133448 133447 4 LAAGSFEAR Unmodified 920.47158 0.4715802 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.402 18.147 2 9.1763E-05 6552 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.26 114.06 844210000 202120000 183290000 185350000 1450500 1329700 1613000 0 0 69171000 0 0 0 40032000 32912000 36249000 0 0 0 47549000 43154000 0 0 0 0 11540 555 11234 217413;217414;217415;217416;217417;217418;217419;217420;217421;217422;217423;217424 133449;133450;133451 133450 3 LAAGWLIDQCQLK Unmodified 1514.7915 0.79153413 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 43.472 41.977 2;3 6.9897E-06 20806 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.81 107.97 369870000 27471000 27425000 29620000 0 0 0 31983000 37323000 0 0 0 0 28988000 29817000 28866000 0 0 0 43719000 42190000 42468000 0 0 0 11541 186 11235 217425;217426;217427;217428;217429;217430;217431;217432;217433;217434;217435;217436;217437;217438;217439;217440;217441;217442;217443;217444 133452;133453;133454;133455;133456;133457;133458;133459;133460;133461;133462;133463;133464 133453 2 LAAHAAIK Unmodified 793.48102 0.48102268 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.772 11.587 2 0.00091658 2646 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 117.7 71.328 1216800000 171830000 156780000 157400000 0 0 0 57403000 51441000 51048000 0 0 0 85351000 86682000 75608000 0 0 0 109690000 111220000 102370000 0 0 0 11542 638 11236 217445;217446;217447;217448;217449;217450;217451;217452;217453;217454;217455;217456 133465;133466;133467;133468 133467 3 LAAIEAEWETQPAPAAFTLFGIPDQEEETNK Unmodified 3415.646 0.64598192 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.259 53.766 3 1.5239E-09 21911 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 104.05 99.498 223270000 0 3318300 0 0 3509500 0 21516000 20012000 28432000 34344000 24647000 24650000 12606000 13049000 12980000 0 0 0 13797000 10405000 0 0 0 0 11543 664 11237 217457;217458;217459;217460;217461;217462;217463;217464;217465;217466;217467;217468;217469 133469;133470;133471 133469 3 LAAITAQDSQR Unmodified 1172.6149 0.61494998 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.225 15.984 2 2.1215E-14 5363 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 215.38 192.23 2245000000 103440000 96098000 77181000 491510 457480 459570 561040000 639700000 525020000 0 1336700 1079100 27857000 25762000 27556000 0 0 0 52513000 50587000 54384000 0 0 0 11544 1265 11238 217470;217471;217472;217473;217474;217475;217476;217477;217478;217479;217480;217481;217482;217483;217484;217485;217486 133472;133473;133474;133475;133476;133477;133478;133479;133480;133481;133482 133479 11 LAAITDWTAENVHHAIQATADELEVGMGK Unmodified 3090.508 0.50804865 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.754 52.314 3;4 1.096E-66 25854 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 253.29 247.92 5756700000 364870000 317470000 346770000 0 0 0 524880000 456680000 477320000 0 0 0 554180000 557150000 433040000 0 0 0 628450000 582330000 513580000 0 0 0 11545 92 11239 217487;217488;217489;217490;217491;217492;217493;217494;217495;217496;217497;217498;217499;217500;217501;217502;217503;217504;217505;217506;217507;217508;217509;217510 133483;133484;133485;133486;133487;133488;133489;133490;133491;133492;133493;133494;133495;133496;133497;133498;133499;133500;133501;133502;133503;133504;133505;133506 133496 24 LAALDLHAYWMAHPQEK Unmodified 1992.988 0.98800211 761 P0AD05 yecA Uncharacterized protein YecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 36.887 35.214 4 0.0040618 17027 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 40.349 39.056 108520000 23480000 18054000 16649000 0 0 0 9787700 11335000 0 0 0 0 9358100 0 0 0 0 0 10257000 9599000 0 0 0 0 11546 761 11240 217511;217512;217513;217514;217515;217516;217517;217518 133507;133508;133509 133507 3 LAALDLVK Unmodified 841.5273 0.52730417 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 33.981 32.522 2 0.00067698 15919 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.84 56.931 5650000000 625280000 619590000 527840000 880570 0 0 568210000 565690000 587640000 0 0 0 343020000 309690000 329180000 0 0 0 388740000 376720000 407490000 0 0 0 11547 874 11241 217519;217520;217521;217522;217523;217524;217525;217526;217527;217528;217529;217530;217531 133510;133511;133512;133513;133514;133515;133516;133517;133518;133519;133520;133521 133510 12 LAALEAQLAEK Unmodified 1155.6499 0.6499385 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 37.541 36.672 2 0.0028608 12243 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 68.847 60.922 611130000 0 0 0 0 0 0 15575000 0 13635000 0 80719000 0 12421000 10529000 8436300 116620000 135080000 126360000 12950000 15514000 13248000 0 0 50033000 11548 193 11242 217532;217533;217534;217535;217536;217537;217538;217539;217540;217541;217542;217543;217544;217545 133522;133523;133524;133525;133526;133527;133528;133529 133528 5 LAALENEMIIFTSPDLKPR Unmodified 2157.1504 0.15037599 1266 P25666 htrL Protein HtrL yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.326 48.854 3 7.7104E-07 19889 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 98.062 90.869 113490000 8291900 5070900 5808800 1334600 0 0 11576000 10040000 10455000 7746800 6806200 5583500 0 0 0 0 0 0 10630000 11890000 13084000 2284500 0 2891200 11549 1266 11243 217546;217547;217548;217549;217550;217551;217552;217553;217554;217555;217556;217557;217558;217559;217560 133530;133531;133532 133530 3 LAALFADAK Unmodified 918.51747 0.51746776 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 30.329 28.864 2 0.0046387 13452 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 77.318 53.794 193800000 0 0 0 0 0 0 13671000 9212200 11681000 0 0 0 12334000 12934000 10150000 0 0 0 42853000 43615000 35574000 0 1775000 0 11550 865 11244 217561;217562;217563;217564;217565;217566;217567;217568;217569;217570 133533;133534;133535 133534 3 LAALTQK Unmodified 743.45414 0.45413923 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 12.903 13.726 2 0.0018344 3927 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 122.98 25.911 1214300000 0 122240000 138440000 0 0 0 0 0 104440000 0 0 0 144250000 143920000 122200000 0 0 0 149960000 133750000 153920000 1164000 0 0 11551 181 11245 217571;217572;217573;217574;217575;217576;217577;217578;217579;217580 133536;133537;133538;133539;133540;133541;133542;133543;133544 133542 9 LAALVDPGGDAEK Unmodified 1254.6456 0.6455814 1783 P75849 ycbL Uncharacterized protein YcbL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.709 24.546 2 6.4339E-06 11223 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.74 121.27 1128500000 116790000 115530000 114200000 2495000 2188400 2077800 90757000 82626000 94365000 0 1957200 2490600 75427000 74656000 71340000 0 0 0 92822000 93294000 90788000 2070400 2688000 0 11552 1783 11246 217581;217582;217583;217584;217585;217586;217587;217588;217589;217590;217591;217592;217593;217594;217595;217596;217597;217598;217599 133545;133546;133547;133548;133549;133550;133551;133552;133553;133554;133555;133556;133557 133546 13 LAALWGVALR Unmodified 1068.6444 0.64439961 436 P0A8J2 dnaT Primosomal protein 1 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.704 45.293 2 9.3195E-06 22517 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.35 154.35 77457000 8757100 6085600 7004100 0 0 0 7979300 9683300 7300700 0 0 0 4119300 3151400 3181300 0 0 0 6590200 7110600 6494400 0 0 0 11553 436 11247 217600;217601;217602;217603;217604;217605;217606;217607;217608;217609;217610;217611 133558;133559;133560;133561;133562;133563;133564;133565;133566 133559 9 LAANWPLEQDELLTR Unmodified 1767.9155 0.91554867 1790 P75915 ycdY Chaperone protein YcdY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 1 48.166 46.86 2;3 2.2694E-20 22043 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 217.14 205.18 1306500000 96507000 90805000 80781000 0 2582200 2550700 119770000 115620000 116390000 0 5920600 6455100 85945000 71102000 61570000 4227100 2074800 0 161790000 140780000 128420000 4799300 4892100 3549400 11554 1790 11248 217612;217613;217614;217615;217616;217617;217618;217619;217620;217621;217622;217623;217624;217625;217626;217627;217628;217629;217630;217631;217632;217633;217634;217635;217636;217637;217638;217639;217640;217641;217642;217643;217644 133567;133568;133569;133570;133571;133572;133573;133574;133575;133576;133577;133578;133579 133576 12 LAAPSEYNQVEYFSNVKPDLFADVINK Unmodified 3070.5288 0.52876732 661 P0ABJ1 cyoA Cytochrome bo(3) ubiquinol oxidase subunit 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 52.072 50.909 3;4 6.7656E-16 20436 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 143.08 140.66 3435100000 103760000 92237000 88375000 53446000 48593000 60375000 125400000 166620000 143630000 100640000 101050000 110350000 172310000 186950000 230290000 25780000 31831000 28047000 410770000 401080000 383730000 122760000 119670000 127410000 11555 661 11249 217645;217646;217647;217648;217649;217650;217651;217652;217653;217654;217655;217656;217657;217658;217659;217660;217661;217662;217663;217664;217665;217666;217667;217668;217669;217670;217671;217672;217673;217674;217675;217676;217677;217678;217679;217680;217681;217682;217683;217684;217685;217686;217687;217688 133580;133581;133582;133583;133584;133585;133586;133587;133588;133589;133590;133591;133592;133593;133594;133595;133596;133597;133598;133599;133600;133601;133602;133603;133604;133605;133606;133607;133608 133581 29 LAAPVLHAR Unmodified 946.57123 0.57123467 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.746 16.554 2 0.00077017 5647 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 101.69 85.537 113670000 10792000 9381100 10331000 0 0 0 9889900 11699000 10239000 0 0 0 7386100 6029700 5973600 0 0 0 9062000 11488000 11398000 0 0 0 11556 35 11250 217689;217690;217691;217692;217693;217694;217695;217696;217697;217698;217699;217700 133609;133610;133611;133612 133609 4 LAAQDPLKFEK Unmodified 1258.6921 0.69213767 1584 P46125 yedI Inner membrane protein YedI yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.599 22.642 3 0.029246 8064 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 50.09 45.195 37646000 0 0 0 1412900 1041000 1333200 5830700 0 3922600 4666400 3668500 2864400 3011800 0 1594300 0 0 0 5966800 0 0 931950 0 1401000 11557 1584 11251 217701;217702;217703;217704;217705;217706;217707;217708;217709;217710;217711;217712;217713 133613 133613 1 LAAQEMLAAYAG Unmodified 1207.5907 0.59070906 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 48.966 47.608 2 4.2982E-05 23027 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.71 105.51 649210000 162150000 143980000 123190000 691390 843920 1038800 56144000 50031000 56617000 0 0 0 9693700 6087600 5792500 0 0 0 11719000 11601000 9623400 0 0 0 11558 1373 11252 217714;217715;217716;217717;217718;217719;217720;217721;217722;217723;217724;217725;217726;217727;217728;217729 133614;133615;133616;133617;133618;133619;133620;133621;133622;133623;133624;133625;133626 133624 13 LAASAEFIER Unmodified 1105.5768 0.57677356 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.757 25.54 2 8.0544E-09 11923 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 186.76 129.21 174720000 0 0 0 0 0 0 28931000 28171000 30977000 0 0 0 10983000 11889000 12307000 0 0 0 17684000 17659000 16117000 0 0 0 11559 1420 11253 217730;217731;217732;217733;217734;217735;217736;217737;217738;217739;217740;217741 133627;133628;133629;133630;133631;133632;133633;133634;133635;133636;133637;133638 133627 12 LAASIAFK Unmodified 819.48544 0.48543935 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 2 3 3 2 3 1 2 1 2 3 2 3 3 3 1 1 1 25.395 24.268 1;2 0.001177 10853 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 111.04 77.678 14664000000 1113300000 1113700000 821810000 23291000 17383000 23310000 1266600000 1233100000 1206700000 17875000 17293000 17370000 1108800000 1090800000 987760000 0 0 0 1591400000 1572100000 1405400000 11417000 10465000 13677000 11560 264 11254 217742;217743;217744;217745;217746;217747;217748;217749;217750;217751;217752;217753;217754;217755;217756;217757;217758;217759;217760;217761;217762;217763;217764;217765;217766;217767;217768;217769;217770;217771;217772;217773;217774;217775;217776;217777;217778;217779;217780;217781;217782;217783;217784;217785;217786 133639;133640;133641;133642;133643;133644;133645;133646;133647;133648;133649;133650;133651;133652;133653;133654;133655;133656;133657;133658;133659;133660;133661;133662;133663;133664;133665;133666;133667;133668;133669;133670;133671;133672;133673;133674;133675;133676;133677;133678;133679;133680;133681;133682;133683;133684;133685;133686 133664 46 LAASPLTNKPQTPSRPASEQPPAQPR Unmodified 2738.4464 0.44637509 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 2 17.632 18.372 3;4;5 3.5163E-11 6626 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.1 106.62 568580000 80610000 80449000 66799000 126650000 97320000 116760000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11561 151 11255 217787;217788;217789;217790;217791;217792;217793;217794;217795;217796;217797;217798;217799 133687;133688;133689;133690;133691;133692;133693;133694;133695;133696 133696 10 LAASPMVARNER Unmodified 1313.6874 0.68740341 1250 P24554 radA DNA repair protein RadA yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.981 22.359 3 0.15368 7721 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 22.72 11.401 31573000000 0 0 0 3004900000 3548200000 639920 0 0 0 2970200000 2315100000 2513400000 0 0 0 1989800000 2176400000 2475700000 0 0 0 3531800000 3654600000 3391900000 11562 1250 11256 217800;217801;217802;217803;217804;217805;217806;217807;217808;217809;217810;217811 133697 133697 1 LAATIAQLPDQIGAK Unmodified 1508.8562 0.85624288 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 2 2 1 38.095 36.474 2;3 1.7042E-11 17898 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 206.97 200.08 9364900000 964680000 904530000 805430000 2296100 2882700 2566500 718880000 766600000 736540000 896740 1157200 1439800 832510000 752960000 722510000 2677400 1107600 1677100 753610000 700930000 682310000 2530300 2329500 1821100 11563 72 11257 217812;217813;217814;217815;217816;217817;217818;217819;217820;217821;217822;217823;217824;217825;217826;217827;217828;217829;217830;217831;217832;217833;217834;217835;217836;217837;217838;217839;217840;217841;217842;217843;217844;217845;217846;217847;217848;217849;217850;217851;217852 133698;133699;133700;133701;133702;133703;133704;133705;133706;133707;133708;133709;133710;133711;133712;133713;133714;133715;133716;133717;133718;133719;133720;133721 133702 24 LAATITPQHLMFNR Unmodified 1611.8555 0.85553137 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 33.688 32.248 2;3 1.0188E-11 15336 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.32 203.72 1501500000 290630000 267640000 235100000 0 0 0 59028000 46328000 54083000 0 0 0 66729000 69056000 65637000 0 0 0 120160000 116660000 110490000 0 0 0 11564 104 11258 217853;217854;217855;217856;217857;217858;217859;217860;217861;217862;217863;217864;217865;217866;217867;217868;217869;217870;217871;217872;217873;217874;217875;217876 133722;133723;133724;133725;133726;133727;133728;133729;133730;133731;133732;133733;133734;133735;133736;133737;133738 133728 17 LADAEFFFNTDR Unmodified 1444.6623 0.6622941 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.813 44.381 2 3.4602E-12 20715 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 197.79 187.03 2531000000 212550000 236350000 196980000 6908500 8616200 8111700 211040000 193190000 202700000 17677000 23810000 20997000 179050000 180220000 160650000 4202600 4406200 3718300 203760000 209200000 217040000 10050000 9654300 10143000 11565 62 11259 217877;217878;217879;217880;217881;217882;217883;217884;217885;217886;217887;217888;217889;217890;217891;217892;217893;217894;217895;217896;217897;217898;217899;217900 133739;133740;133741;133742;133743;133744;133745;133746;133747;133748;133749;133750;133751;133752;133753;133754;133755;133756;133757;133758;133759 133758 20 LADAEFFFNTDRK Unmodified 1572.7573 0.75725712 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.949 35.124 3 0.020471 16938 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 38.366 33.564 93458000 5676300 6290500 8563600 955150 840960 1020900 7620400 9244500 9005000 1898700 2632400 2446100 7129700 6713900 6198300 0 0 0 7119500 0 5111300 1670000 1181400 2139400 11566 62 11260 217901;217902;217903;217904;217905;217906;217907;217908;217909;217910;217911;217912;217913;217914;217915;217916;217917;217918;217919;217920 133760;133761;133762;133763;133764 133761 0 LADALSQQNVTVIK Unmodified 1498.8355 0.83550744 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 31.257 29.813 2 4.8598E-07 14170 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.05 119.33 122560000 0 0 0 0 0 0 34916000 30100000 32574000 0 0 0 6060000 7458000 5927100 0 0 0 2629400 0 2900200 0 0 0 11567 1318 11261 217921;217922;217923;217924;217925;217926;217927;217928 133765;133766 133766 2 LADCQERDPALSELYLVEGDSAGGSAK Unmodified 2850.3342 0.33416661 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.644 40.016 3 4.7814E-41 14891 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 146.79 146.02 1257000000 94931000 83465000 75048000 6877000 7872300 6828200 66851000 64980000 61160000 53871000 53753000 46766000 80332000 71389000 74196000 30882000 16494000 22824000 84029000 86344000 102940000 22463000 20927000 21773000 11568 883 11262 217929;217930;217931;217932;217933;217934;217935;217936;217937;217938;217939;217940;217941;217942;217943;217944;217945;217946;217947;217948;217949;217950;217951;217952 133767;133768;133769;133770;133771;133772;133773;133774;133775;133776;133777;133778;133779;133780;133781;133782;133783;133784;133785;133786;133787;133788;133789;133790 133767 24 LADCTAQDLNR Unmodified 1275.5877 0.58774895 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.012 15.931 2 2.2923E-10 5478 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 191.16 180.13 158500000 0 0 0 583640 884320 744600 20148000 0 0 0 0 0 21714000 15747000 19952000 0 0 0 25132000 27341000 26250000 0 0 0 11569 1164 11263 217953;217954;217955;217956;217957;217958;217959;217960;217961;217962;217963;217964 133791;133792;133793;133794;133795;133796;133797;133798 133791 8 LADDALNGVTGLVEYHEHFNR Unmodified 2369.14 0.14002231 1665 P63417 yhbS Uncharacterized N-acetyltransferase YhbS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.251 38.586 4 2.1412E-16 19155 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.39 153.86 390190000 21477000 16979000 17123000 0 0 0 35944000 34398000 44048000 0 0 0 35438000 48418000 43777000 0 0 0 25250000 34232000 33109000 0 0 0 11570 1665 11264 217965;217966;217967;217968;217969;217970;217971;217972;217973;217974;217975;217976 133799;133800;133801;133802;133803;133804 133800 6 LADDALNGVTGLVEYHEHFNRF Unmodified 2516.2084 0.20843623 1665 P63417 yhbS Uncharacterized N-acetyltransferase YhbS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 45.115 43.686 4 1.1014E-21 20303 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 159.7 152.42 262640000 18800000 10265000 14175000 757320 0 0 33329000 29984000 32803000 0 0 0 22394000 24879000 24555000 0 0 0 17298000 19033000 14366000 0 0 0 11571 1665 11265 217977;217978;217979;217980;217981;217982;217983;217984;217985;217986;217987;217988;217989 133805;133806;133807;133808;133809;133810;133811;133812;133813;133814;133815 133815 11 LADDGLDELR Unmodified 1115.5459 0.54586736 1339 P30136 thiC Phosphomethylpyrimidine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 14.105 14.919 2 0.048448 4806 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 50.607 27.826 239490000 0 36956000 29120000 0 0 0 16991000 16913000 14477000 0 0 0 0 0 0 0 0 0 43365000 40663000 41006000 0 0 0 11572 1339 11266 217990;217991;217992;217993;217994;217995;217996;217997 133816;133817 133816 2 LADDVGIWPLVVIR Unmodified 1564.8977 0.89771377 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.228 53.755 2 1.2622E-08 26719 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.24 144.29 682860000 64480000 49626000 52828000 0 0 0 68691000 54656000 50363000 0 0 0 58290000 50400000 49812000 0 0 0 55703000 67573000 60441000 0 0 0 11573 563 11267 217998;217999;218000;218001;218002;218003;218004;218005;218006;218007;218008;218009 133818;133819;133820;133821;133822;133823;133824;133825;133826 133819 9 LADEVDESAKEAEK Unmodified 1532.7206 0.72059684 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.57 14.214 2 4.2666E-06 4475 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 124.12 120.08 47550000 7217100 0 7147100 0 969100 883780 6285100 0 6877500 1104800 1257400 778290 0 0 0 0 0 0 6375300 0 7773500 0 0 881090 11574 295 11268 218010;218011;218012;218013;218014;218015;218016;218017;218018;218019;218020;218021 133827;133828;133829 133827 3 LADIASGQPLPVAGK Unmodified 1435.8035 0.80347903 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.943 30.568 2 2.3534E-08 14466 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 135.08 123.13 1278500000 166320000 146550000 142960000 843950 891800 1022700 105570000 116590000 104600000 0 0 0 68926000 72513000 65185000 0 0 0 91363000 96666000 98456000 0 0 0 11575 1076 11269 218022;218023;218024;218025;218026;218027;218028;218029;218030;218031;218032;218033;218034;218035;218036 133830;133831;133832;133833;133834;133835;133836;133837;133838;133839;133840;133841 133836 12 LADKAPESTPTVYR Unmodified 1546.7991 0.79912193 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 16.161 16.989 2;3 8.8589E-09 6116 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 118.52 112.22 1577600000 57241000 51273000 48641000 657310 686770 0 233200000 229220000 240900000 0 0 0 117020000 111520000 97320000 0 0 0 122830000 142770000 124350000 0 0 0 11576 167 11270 218037;218038;218039;218040;218041;218042;218043;218044;218045;218046;218047;218048;218049;218050;218051;218052;218053;218054;218055;218056;218057;218058;218059;218060;218061;218062 133842;133843;133844;133845;133846;133847;133848;133849;133850;133851;133852;133853;133854;133855;133856;133857;133858;133859;133860;133861;133862;133863 133842 22 LADKQSVLEMSDVNER Unmodified 1832.8938 0.89382695 536 P0A9M0 lon Lon protease yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.636 23.9 3 1.2406E-13 7413 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 158.65 155.52 78105000 0 0 0 1355100 1419300 1450600 0 0 0 0 0 0 0 0 0 13688000 25560000 19191000 0 0 0 5164100 5091700 5185700 11577 536 11271 218063;218064;218065;218066;218067;218068;218069;218070;218071 133864;133865;133866 133866 3 LADLFTNDTSGVLTIATTHTQAR Unmodified 2445.25 0.24996669 1971 Q47083 cbl HTH-type transcriptional regulator cbl yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.881 44.423 3 2.1553E-06 21677 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.462 83.3 121180000 9616400 10713000 11410000 0 0 0 12976000 9159300 10340000 0 2830900 2675000 8949300 7783600 7847100 0 0 826560 11695000 14356000 0 0 0 0 11578 1971 11272 218072;218073;218074;218075;218076;218077;218078;218079;218080;218081;218082;218083;218084;218085 133867;133868;133869 133869 3 LADLLDEALER Unmodified 1256.6612 0.66123147 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.907 45.724 2 4.0558E-15 21207 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 223.84 169.63 1618500000 128310000 112770000 102250000 0 0 0 138970000 132020000 132560000 0 0 0 123760000 126710000 128580000 7931600 0 2389600 153730000 176040000 152450000 0 0 0 11579 1073 11273 218086;218087;218088;218089;218090;218091;218092;218093;218094;218095;218096;218097;218098;218099;218100 133870;133871;133872;133873;133874;133875;133876;133877;133878;133879;133880;133881;133882;133883;133884 133883 15 LADLLLDNKADR Unmodified 1355.7409 0.74087877 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 27.871 26.445 3 0.00053959 8802 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 75.739 60.639 16220000 0 0 0 6044100 3417800 4828400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1930000 0 0 11580 1748 11274 218101;218102;218103;218104 133885;133886 133886 2 LADLMEAHAEELALLETLDTGKPIR Unmodified 2748.4368 0.43678119 1225 P23883 puuC Aldehyde dehydrogenase PuuC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 51.912 50.719 4 1.3117E-15 24796 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.24 114.2 136860000 45570000 40877000 47786000 0 0 0 0 0 0 0 0 0 0 2622500 0 0 0 0 0 0 0 0 0 0 11581 1225 11275 218105;218106;218107;218108 133887;133888;133889 133888 3 LADLRGQNEDQNVGIK Unmodified 1768.9068 0.9067749 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.262 19.358 3 1.3702E-06 5810 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 76.151 69.618 98077000 0 0 0 13672000 13740000 17265000 0 0 0 6706400 5612500 6110300 0 0 0 2948200 2895500 3135200 0 0 0 8385000 8494900 9112200 11582 240 11276 218109;218110;218111;218112;218113;218114;218115;218116;218117;218118;218119;218120 133890;133891;133892;133893;133894;133895;133896;133897;133898 133896 9 LADNDSDGSPMDSDGEELSSSISEWR Unmodified 2798.1461 0.14609107 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.309 44.67 3 0.0016194 22100 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 55.994 53.771 75286000 4945700 3290900 0 2256800 1908400 1570500 6527500 6208200 0 5674600 4025000 3473800 5085600 3923600 4824200 0 0 0 5836600 6781700 8952600 0 0 0 11583 201 11277 218121;218122;218123;218124;218125;218126;218127;218128;218129;218130;218131;218132;218133;218134;218135;218136 133899 133899 1 LADPTAMVVATVDEHGQPYQR Unmodified 2297.111 0.11103037 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.701 39.837 3 4.1045E-28 19302 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 159.01 150.92 991260000 94903000 88170000 88040000 1966300 2080300 2008100 77986000 81893000 70751000 11885000 13059000 8972600 62223000 50486000 53100000 0 0 0 87779000 89231000 67512000 9788600 14875000 14549000 11584 944 11278 218137;218138;218139;218140;218141;218142;218143;218144;218145;218146;218147;218148;218149;218150;218151;218152;218153;218154;218155;218156;218157 133900;133901;133902;133903;133904;133905;133906;133907;133908;133909;133910;133911;133912;133913 133909 14 LADQLWLTIEER Unmodified 1485.7827 0.78274359 1312 P27838 cyaY Protein CyaY yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 50.636 49.234 2 3.8302E-23 22860 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 228.98 218.46 318390000 25846000 21321000 23573000 0 4382300 0 32375000 28250000 27680000 0 0 0 24775000 20587000 25649000 0 0 0 30077000 27499000 26372000 0 0 0 11585 1312 11279 218158;218159;218160;218161;218162;218163;218164;218165;218166;218167;218168;218169;218170 133914;133915;133916;133917;133918;133919 133918 4 LADSGLNIIAAK Unmodified 1184.6765 0.6764876 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.392 31.725 2 9.8402E-17 14501 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 206.43 141.67 5317800000 629810000 593630000 501650000 1271700 922810 1540000 264830000 227330000 205770000 950210 1024600 1226300 298800000 287000000 273660000 0 0 0 680650000 701950000 636810000 3988100 5020800 0 11586 392 11280 218171;218172;218173;218174;218175;218176;218177;218178;218179;218180;218181;218182;218183;218184;218185;218186;218187;218188;218189;218190 133920;133921;133922;133923;133924;133925;133926;133927 133925 8 LADTIAAHMPLK Unmodified 1279.6958 0.69584284 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 27.497 26.358 2;3 2.6753E-08 11984 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.33 157.14 2509800000 189790000 183760000 169740000 0 0 0 185150000 178630000 184130000 29931000 24099000 23683000 197890000 163840000 159130000 94819000 74942000 86515000 160570000 171440000 184140000 16459000 14689000 16483000 11587 536 11281 218191;218192;218193;218194;218195;218196;218197;218198;218199;218200;218201;218202;218203;218204;218205;218206;218207;218208;218209;218210;218211;218212;218213;218214;218215;218216;218217;218218;218219;218220;218221;218222;218223;218224;218225;218226;218227;218228;218229;218230;218231;218232;218233 133928;133929;133930;133931;133932;133933;133934;133935;133936;133937;133938;133939;133940;133941;133942;133943;133944;133945;133946;133947;133948;133949;133950;133951;133952;133953;133954;133955;133956;133957;133958;133959;133960;133961;133962;133963;133964;133965;133966;133967;133968;133969;133970 133955 43 LADTLPGVKPQLIR Unmodified 1519.9086 0.9086128 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.083 30.501 3 1.3282E-05 14421 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 93.623 90.762 391460000 19580000 17561000 18252000 4464600 3866100 4013700 32547000 38239000 38387000 8307700 6582200 6498700 25659000 29726000 24942000 0 0 0 32715000 42427000 29982000 2951900 2468900 2288100 11588 1260 11282 218234;218235;218236;218237;218238;218239;218240;218241;218242;218243;218244;218245;218246;218247;218248;218249;218250;218251;218252;218253;218254 133971;133972;133973;133974;133975;133976;133977;133978;133979;133980;133981;133982 133974 12 LADVLQS Unmodified 744.40177 0.4017693 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 2 1 29.549 27.953 2 0.068585 13159 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 59.641 44.42 268420000 0 3206500 0 5658500 4113100 3704900 24138000 18491000 20472000 11354000 11139000 8053100 18218000 22857000 17338000 0 0 0 21039000 21717000 19276000 14285000 12146000 11212000 11589 643 11283 218255;218256;218257;218258;218259;218260;218261;218262;218263;218264;218265;218266;218267;218268;218269;218270;218271;218272;218273;218274;218275;218276 133983;133984;133985;133986;133987;133988;133989;133990;133991;133992;133993;133994;133995;133996 133987 14 LADYIICSPAPETPLLGR Unmodified 1985.0292 0.029198223 745 P0ACS7 rpiR HTH-type transcriptional regulator RpiR yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.379 48.014 2 1.4057E-09 23583 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 156.69 130.15 59741000 6930400 5619600 8025900 0 0 0 6132900 4632800 5142000 0 0 0 3822100 3485200 3843700 0 0 0 3056100 3446700 5603500 0 0 0 11590 745 11284 218277;218278;218279;218280;218281;218282;218283;218284;218285;218286;218287;218288 133997;133998 133997 2 LAEAFAEYLHER Unmodified 1447.7096 0.70957864 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.742 33.243 3 0.00018313 15319 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 85.522 82.748 287140000 28090000 30152000 20523000 2052900 4075600 2425600 20389000 20747000 20762000 8121200 7665400 6204900 12926000 11943000 11552000 4173300 2978900 4543600 21206000 20726000 14528000 2663300 4375900 4316600 11591 1083 11285 218289;218290;218291;218292;218293;218294;218295;218296;218297;218298;218299;218300;218301;218302;218303;218304;218305;218306;218307;218308;218309;218310;218311;218312 133999;134000;134001;134002;134003;134004;134005;134006;134007;134008;134009;134010;134011;134012;134013;134014;134015;134016;134017;134018;134019 134017 21 LAEAGIPTQMER Unmodified 1314.6602 0.66018561 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.006 24.904 2 1.4234E-06 11490 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.56 145.3 2723100000 620170000 604340000 586400000 8034100 7862500 6900300 105490000 102670000 100040000 0 0 0 76664000 76044000 82561000 0 1071500 0 107440000 115290000 117060000 1384000 1831200 1794400 11592 334 11286 218313;218314;218315;218316;218317;218318;218319;218320;218321;218322;218323;218324;218325;218326;218327;218328;218329;218330;218331 134020;134021;134022;134023;134024;134025;134026;134027;134028;134029;134030;134031;134032;134033 134020 14 LAEALSMLK Unmodified 974.54705 0.54705333 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 35.229 33.627 2 0.1692 16122 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 36.395 0 134600000 22844000 0 0 0 0 0 18380000 18637000 20225000 0 0 0 0 0 0 0 0 0 19074000 16869000 18572000 0 0 0 11593 127 11287 218332;218333;218334;218335;218336;218337;218338 134034 134034 1 LAEAQEELK Unmodified 1029.5342 0.53424004 1556 P42616 yqjC Protein YqjC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.646 15.175 2 0.00031838 4699 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 116.25 67.463 496230000 0 0 0 0 0 0 62571000 73995000 64326000 14471000 13436000 18216000 44384000 39437000 36823000 0 0 0 42007000 30515000 33641000 6150100 9161300 7095600 11594 1556 11288 218339;218340;218341;218342;218343;218344;218345;218346;218347;218348;218349;218350;218351;218352;218353;218354 134035;134036;134037;134038;134039;134040;134041;134042;134043;134044 134043 10 LAEAQEELKK Unmodified 1157.6292 0.62920306 1556 P42616 yqjC Protein YqjC yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 2 2 2 2 2 2 2 1 2 11.799 12.641 2;3 0.000183 3255 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 126.24 74.897 286670000 12115000 20533000 15213000 0 0 0 32768000 34504000 38647000 0 0 0 22668000 24247000 24483000 0 0 0 23189000 17367000 20938000 0 0 0 11595 1556 11289 218355;218356;218357;218358;218359;218360;218361;218362;218363;218364;218365;218366;218367;218368;218369;218370;218371;218372;218373;218374;218375 134045;134046;134047;134048;134049 134048 5 LAEDILR Unmodified 828.47052 0.47051757 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.219 24.145 2 0.00011623 10738 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.39 118.68 495280000 69974000 84415000 70622000 0 0 0 40873000 35607000 42478000 3809900 0 0 22097000 20275000 19609000 0 0 0 24238000 29939000 31345000 0 0 0 11596 748 11290 218376;218377;218378;218379;218380;218381;218382;218383;218384;218385;218386;218387;218388 134050;134051;134052;134053;134054;134055;134056 134052 6 LAEEIIYGPEHVSTGASNDIK Unmodified 2242.1117 0.11174188 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 32.375 30.938 2;3 2.9177E-15 11896 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 171.26 157.58 1758300000 49453000 46934000 52538000 25628000 28887000 25731000 142700000 150940000 142540000 44798000 51079000 66504000 117300000 101840000 99901000 14436000 8855700 12036000 141710000 157240000 154530000 39363000 44114000 39206000 11597 595 11291 218389;218390;218391;218392;218393;218394;218395;218396;218397;218398;218399;218400;218401;218402;218403;218404;218405;218406;218407;218408;218409;218410;218411;218412;218413;218414;218415;218416;218417;218418;218419;218420;218421;218422;218423;218424;218425;218426;218427;218428;218429;218430;218431 134057;134058;134059;134060;134061;134062;134063;134064;134065;134066;134067;134068;134069;134070;134071;134072;134073;134074;134075;134076;134077;134078;134079;134080;134081;134082 134062 26 LAEFHHFNLPLLVGMSR Unmodified 1980.0404 0.040372032 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 45.694 44.266 3;4 7.7158E-10 21379 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.25 131.33 305140000 30089000 29702000 28234000 0 0 0 13455000 25612000 22149000 0 0 0 16496000 20985000 17772000 0 0 0 32841000 33262000 34538000 0 0 0 11598 691 11292 218432;218433;218434;218435;218436;218437;218438;218439;218440;218441;218442;218443;218444;218445;218446;218447;218448;218449;218450;218451;218452;218453;218454 134083;134084;134085;134086;134087;134088;134089;134090;134091;134092;134093;134094;134095;134096;134097 134091 15 LAEGDYQQVEK Unmodified 1278.6092 0.6091959 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.211 16.862 2 1.221E-05 5929 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 144.77 138.47 197920000 19026000 21652000 0 3558700 3171400 4064300 0 0 27791000 10064000 4662400 4610200 18202000 14991000 13955000 827640 0 0 0 28179000 23163000 0 0 0 11599 717 11293 218455;218456;218457;218458;218459;218460;218461;218462;218463;218464;218465;218466;218467;218468;218469 134098;134099;134100;134101;134102;134103;134104;134105 134099 8 LAEGLDALVMDVK Unmodified 1372.7272 0.72720254 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 49.265 47.897 2;3 9.8159E-07 22352 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 145.55 129.3 745250000 21914000 27364000 24236000 0 0 0 114520000 105630000 109440000 0 0 0 68031000 58366000 57476000 0 0 0 52869000 47952000 57457000 0 0 0 11600 167 11294 218470;218471;218472;218473;218474;218475;218476;218477;218478;218479;218480;218481;218482;218483;218484;218485;218486;218487;218488;218489;218490;218491 134106;134107;134108;134109;134110;134111;134112;134113;134114;134115;134116;134117;134118;134119 134116 13 LAEHALEK Unmodified 909.49198 0.4919813 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.369 11.963 2 0.00023142 2573 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 151.04 100.4 1806400000 0 0 0 2607700 2340100 2914300 195340000 173610000 176520000 214820000 194830000 204910000 86751000 73945000 75704000 33735000 10049000 18979000 75275000 85192000 86095000 31386000 33540000 27833000 11601 1088 11295 218492;218493;218494;218495;218496;218497;218498;218499;218500;218501;218502;218503;218504;218505;218506;218507;218508;218509;218510;218511;218512 134120;134121;134122;134123;134124;134125;134126;134127;134128;134129;134130 134120 11 LAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAK Unmodified 3811.9309 0.93087097 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.389 52.983 3 8.8258E-13 25958 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.49 105.49 227640000 76327000 77290000 74027000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11602 1141 11296 218513;218514;218515 134131;134132;134133 134133 3 LAELESR Unmodified 816.43413 0.43413207 455 P0A8R4 slyX Protein SlyX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 14.317 14.96 2 0.018715 4761 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 94.006 65.692 344490000 41177000 40775000 41379000 0 0 0 7093900 41882000 7237900 0 0 2068300 43211000 0 38921000 2064300 0 1786400 37306000 0 39585000 0 0 0 11603 455 11297 218516;218517;218518;218519;218520;218521;218522;218523;218524;218525;218526;218527;218528 134134;134135;134136;134137;134138;134139;134140 134134 0 LAELGGER Unmodified 843.44503 0.4450311 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.393 15.203 2 6.3142E-05 4970 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 168.45 65.167 1515500000 125940000 115590000 130760000 2492600 2932600 2257500 127970000 130860000 147040000 0 0 0 117500000 94830000 84954000 0 0 0 151320000 142230000 138870000 0 0 0 11604 1503 11298 218529;218530;218531;218532;218533;218534;218535;218536;218537;218538;218539;218540;218541;218542;218543 134141;134142;134143;134144;134145;134146;134147;134148;134149;134150;134151;134152;134153;134154;134155 134146 15 LAELGPQGLITTLK Unmodified 1452.8552 0.85518025 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.372 43.949 2 6.4756E-07 21227 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.32 124.92 939170000 82526000 76157000 69065000 0 0 0 89800000 84857000 78844000 0 0 0 72555000 68351000 67434000 0 0 0 83765000 92398000 73413000 0 0 0 11605 1224 11299 218544;218545;218546;218547;218548;218549;218550;218551;218552;218553;218554;218555 134156;134157;134158;134159;134160;134161;134162;134163;134164;134165;134166;134167 134164 12 LAELLALEEK Unmodified 1127.6438 0.64379049 436 P0A8J2 dnaT Primosomal protein 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 38.773 37.079 2 0.0020782 17868 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.111 67.374 93382000 12097000 8408000 9143000 0 0 0 9293500 9314200 9465500 0 0 0 0 4502700 5754500 0 0 0 8886400 9059800 7457000 0 0 0 11606 436 11300 218556;218557;218558;218559;218560;218561;218562;218563;218564;218565;218566 134168;134169;134170 134168 0 LAELQER Unmodified 857.46068 0.46068117 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.443 14.851 2 1.0328E-07 4746 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.17 58.982 563140000 18259000 16971000 2309800 0 0 0 0 186040000 0 25599000 25210000 24947000 0 0 102780000 5956400 4010600 3843400 0 61829000 73195000 4492700 3855500 3840700 11607 25 11301 218567;218568;218569;218570;218571;218572;218573;218574;218575;218576;218577;218578;218579;218580;218581;218582;218583;218584;218585;218586;218587 134171;134172;134173;134174;134175;134176;134177;134178;134179;134180;134181;134182;134183;134184;134185;134186;134187 134175 17 LAELQYAR Unmodified 962.51853 0.5185304 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 20.975 21.267 2 0.00049393 8427 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 135.87 63.727 175900000 29856000 22232000 21132000 0 0 0 19366000 19881000 24355000 0 0 0 9913000 8864700 8565400 0 0 0 0 0 10263000 0 0 1471000 11608 426 11302 218588;218589;218590;218591;218592;218593;218594;218595;218596;218597;218598 134188;134189;134190;134191;134192;134193;134194 134191 5 LAELTMNK Unmodified 918.48445 0.48445308 724 P0ACE3 hha Hemolysin expression-modulating protein Hha yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 2 1 1 1 1 1 19.504 19.844 2 5.5033E-05 6216 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 170.06 149.5 321980000 18511000 15554000 17382000 4119000 4569800 3439200 22497000 23459000 28874000 8836100 6669000 6327800 16545000 15196000 15081000 0 2523500 0 32435000 30167000 30262000 6562400 6422600 6549200 11609 724 11303 218599;218600;218601;218602;218603;218604;218605;218606;218607;218608;218609;218610;218611;218612;218613;218614;218615;218616;218617;218618;218619;218620;218621;218622;218623;218624;218625;218626;218627 134195;134196;134197;134198;134199;134200;134201;134202;134203;134204;134205;134206;134207 134198 13 LAELVPEAR Unmodified 996.5604 0.56039521 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.391 24.302 2 0.0083752 10932 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 77.732 35.133 158310000 21965000 23083000 16649000 0 0 0 11334000 10445000 10248000 0 0 0 10217000 10358000 7271400 0 0 0 12969000 10967000 12808000 0 0 0 11610 1355 11304 218628;218629;218630;218631;218632;218633;218634;218635;218636;218637;218638;218639 134208;134209;134210;134211;134212;134213;134214;134215 134212 0 LAENASLEEMVR Unmodified 1360.6657 0.66566492 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 31.81 30.458 2 9.3163E-31 13810 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 258.52 170.89 1003200000 78256000 80884000 79858000 0 0 613990 153880000 138090000 143360000 0 0 0 51616000 53503000 55141000 0 0 0 50913000 59870000 57243000 0 0 0 11611 145 11305 218640;218641;218642;218643;218644;218645;218646;218647;218648;218649;218650;218651;218652 134216;134217;134218;134219;134220;134221;134222 134220 7 LAENLRK Unmodified 842.4974 0.49740102 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 1 1 11.362 11.976 2 0.00085317 2299 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 147.69 28.137 24674000000 28577000 23783000 23983000 21994000 3391300 3750800 30233000 26900000 28606000 1376700000 1326000000 1188600000 24851000 21884000 21977000 7054600000 3397200000 3806800000 34207000 37866000 30344000 2254400000 2051100000 1856800000 11612 463 11306 218653;218654;218655;218656;218657;218658;218659;218660;218661;218662;218663;218664;218665;218666;218667;218668;218669;218670;218671;218672;218673;218674;218675;218676;218677;218678;218679;218680;218681;218682;218683;218684;218685;218686;218687;218688;218689;218690;218691;218692;218693;218694 134223;134224;134225;134226;134227;134228;134229;134230;134231;134232 134223 10 LAEPAPTGEQLQNILR Unmodified 1748.9421 0.94209778 756 P0ACY1 ydjA Putative NAD(P)H nitroreductase YdjA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 2 40.713 39.086 2;3 1.0893E-13 18174 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 204.17 200 2018700000 193210000 204870000 223310000 798530 0 0 214720000 166230000 160270000 0 0 0 111250000 118690000 113370000 0 0 0 171640000 163010000 177300000 0 0 0 11613 756 11307 218695;218696;218697;218698;218699;218700;218701;218702;218703;218704;218705;218706;218707;218708;218709;218710;218711;218712;218713;218714;218715;218716;218717;218718 134233;134234;134235;134236;134237;134238;134239;134240;134241;134242;134243;134244;134245;134246;134247;134248;134249;134250;134251;134252;134253;134254;134255 134254 23 LAEPINLADAQK Unmodified 1281.6929 0.69286595 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 29.045 27.681 2 0.00016889 10754 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 88.681 85.829 303260000 36807000 31472000 30638000 1259000 1468600 1319000 15714000 18294000 18423000 4441800 4682900 3305500 15808000 16664000 16815000 0 0 1759400 24533000 24952000 26914000 2844800 2063400 3081500 11614 1459 11308 218719;218720;218721;218722;218723;218724;218725;218726;218727;218728;218729;218730;218731;218732;218733;218734;218735;218736;218737;218738;218739;218740;218741;218742;218743;218744;218745;218746;218747;218748;218749;218750;218751;218752 134256;134257;134258;134259 134256 3 LAEQAMQAVIAR Unmodified 1299.6969 0.69690547 1134 P17109 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 31.808 29.989 2 0.0010208 14297 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.643 53.863 73210000 0 0 0 0 0 0 24776000 22326000 26108000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11615 1134 11309 218753;218754;218755 134260;134261 134261 0 LAEQAYIR Unmodified 962.51853 0.5185304 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.657 18.933 2 0.00031499 5249 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 146.21 70.895 153230000 7055300 6671800 6031200 3839300 4456800 4493500 21145000 21207000 15612000 8094300 7231000 6581400 0 0 0 2807100 2264900 2212500 0 22672000 0 0 6822800 4030400 11616 717 11310 218756;218757;218758;218759;218760;218761;218762;218763;218764;218765;218766;218767;218768;218769;218770;218771;218772;218773 134262;134263;134264;134265;134266;134267 134266 5 LAEQNQLR Unmodified 970.51959 0.51959303 1290 P27129 rfaJ Lipopolysaccharide 1,2-glucosyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.357 12.93 2 0.055552 3160 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 58.604 49.017 64947000 0 8240600 0 0 0 0 4774800 4860600 0 2127900 2430200 1606200 0 0 0 0 0 0 18300000 11023000 10703000 0 0 880370 11617 1290 11311 218774;218775;218776;218777;218778;218779;218780;218781;218782;218783 134268;134269 134268 2 LAEQPIEK Unmodified 926.5073 0.50729701 1737 P69506 ytfE Iron-sulfur cluster repair protein YtfE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.842 13.683 2 0.0074509 4148 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 83.313 48.489 145200000 14851000 11331000 12786000 0 0 0 19449000 19201000 15733000 0 0 0 11106000 8201500 7964900 0 0 0 6944500 9871500 7764600 0 0 0 11618 1737 11312 218784;218785;218786;218787;218788;218789;218790;218791;218792;218793;218794;218795 134270;134271 134270 1 LAESEASNDQAPVQMPR Unmodified 1841.8578 0.8577758 814 P0ADW3 yhcB Inner membrane protein YhcB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 24.636 23.551 2;3 8.8404E-62 10629 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 369.68 369.68 1138600000 36177000 25598000 31595000 8705000 8048600 9376700 131910000 113560000 103940000 36993000 30588000 32814000 84464000 87406000 80556000 0 0 0 87310000 95312000 94993000 13003000 14250000 11977000 11619 814 11313 218796;218797;218798;218799;218800;218801;218802;218803;218804;218805;218806;218807;218808;218809;218810;218811;218812;218813;218814;218815;218816;218817;218818;218819;218820;218821;218822;218823;218824;218825;218826;218827;218828;218829;218830;218831;218832;218833;218834;218835;218836;218837 134272;134273;134274;134275;134276;134277;134278;134279;134280;134281;134282;134283;134284;134285;134286;134287;134288;134289;134290;134291;134292;134293;134294;134295;134296;134297;134298;134299;134300;134301;134302;134303;134304 134278 32 LAEVASEYLR Unmodified 1149.603 0.60298831 1010 P0AGE0 ssb Single-stranded DNA-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.189 28.817 2 2.3885E-12 13464 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 212.58 199.99 2571500000 486050000 416350000 367680000 0 0 0 153740000 157490000 128560000 4890200 5783600 5046400 93237000 100650000 80888000 11033000 6190700 7090400 170370000 185700000 179410000 3491700 3728800 4083800 11620 1010 11314 218838;218839;218840;218841;218842;218843;218844;218845;218846;218847;218848;218849;218850;218851;218852;218853;218854;218855;218856;218857;218858 134305;134306;134307;134308;134309;134310;134311;134312;134313;134314;134315;134316;134317;134318;134319;134320;134321;134322;134323 134315 18 LAEVDTKPQLEIYADDVK Unmodified 2046.0521 0.052101735 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 1 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 34.182 32.698 3 4.1836E-07 15804 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 99.891 91.39 186350000 0 36971000 32363000 0 0 0 0 53524000 41381000 0 0 0 0 0 0 0 0 0 0 22114000 0 0 0 0 11621 1926 11315 218859;218860;218861;218862;218863 134324 134324 1 LAEVEPALAEVAHK Unmodified 1475.7984 0.79839365 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 2 2 2 3 2 1 1 1 2 2 2 2 2 3 28.083 26.757 2;3 3.607E-11 10061 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 172.8 134.5 1621700000 117470000 114130000 93475000 26151000 25156000 27620000 95021000 84577000 83709000 79394000 102380000 74178000 70908000 67554000 55099000 9918700 6345000 7659600 142540000 14212000 146470000 56023000 61056000 60660000 11622 252 11316 218864;218865;218866;218867;218868;218869;218870;218871;218872;218873;218874;218875;218876;218877;218878;218879;218880;218881;218882;218883;218884;218885;218886;218887;218888;218889;218890;218891;218892;218893;218894;218895;218896;218897;218898;218899;218900;218901;218902;218903;218904;218905;218906;218907;218908;218909;218910;218911 134325;134326;134327;134328;134329;134330;134331;134332;134333;134334;134335;134336;134337;134338;134339;134340;134341;134342;134343;134344;134345;134346;134347;134348;134349;134350 134331 26 LAEVLAAANAR Unmodified 1097.6193 0.61930707 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 2 2 2 2 2 2 2 2 2 3 2 2 3 1 2 3 2 3 2 2 2 24.636 23.686 2;3 1.828E-07 10405 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 167.23 125.12 7429500000 898700000 901230000 792260000 56480000 59451000 67864000 338340000 306510000 274110000 76114000 63708000 59353000 411890000 391820000 348410000 35232000 38396000 33518000 677740000 686130000 654740000 86176000 84987000 86378000 11623 364 11317 218912;218913;218914;218915;218916;218917;218918;218919;218920;218921;218922;218923;218924;218925;218926;218927;218928;218929;218930;218931;218932;218933;218934;218935;218936;218937;218938;218939;218940;218941;218942;218943;218944;218945;218946;218947;218948;218949;218950;218951;218952;218953;218954;218955;218956;218957;218958;218959;218960;218961;218962;218963;218964;218965 134351;134352;134353;134354;134355;134356;134357;134358;134359;134360;134361;134362;134363;134364;134365;134366;134367;134368;134369;134370;134371;134372;134373;134374;134375;134376;134377;134378;134379;134380;134381;134382;134383;134384;134385 134365 31 LAEVTGFPCVPAEDLIEATSDCGAYVMVHGALK Unmodified 3519.6724 0.67241314 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.584 53.136 3 1.2892E-33 26256 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 191.51 189.59 1193500000 86456000 87703000 77980000 0 0 0 110550000 113330000 105860000 0 0 0 129990000 133380000 119410000 0 0 0 83286000 70124000 75406000 0 0 0 11624 697 11318 218966;218967;218968;218969;218970;218971;218972;218973;218974;218975;218976;218977 134386;134387;134388;134389;134390;134391;134392;134393;134394;134395;134396;134397 134388 12 LAEVVEK Unmodified 786.44872 0.4487195 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.043 13.907 2 0.0067291 4277 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.262 44.142 591750000 38835000 33080000 30641000 666050 0 0 54439000 59827000 56534000 0 0 0 44022000 47735000 38584000 0 0 0 65929000 63159000 58304000 0 0 0 11625 97 11319 218978;218979;218980;218981;218982;218983;218984;218985;218986;218987;218988;218989;218990 134398;134399;134400;134401;134402;134403;134404 134398 7 LAEYIAQQLNVVVNPK Unmodified 1797.9989 0.99888437 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.999 44.513 2 3.2994E-10 21954 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.62 140.7 81882000 6233300 6982500 7611400 0 0 0 12541000 11423000 9215100 0 0 0 4965600 4912500 4315300 0 0 0 5037300 4407100 4237200 0 0 0 11626 709 11320 218991;218992;218993;218994;218995;218996;218997;218998;218999;219000;219001;219002 134405;134406;134407;134408;134409;134410;134411 134407 3 LAFAGLK Unmodified 718.43776 0.43776088 75;74 P02932;P02931 phoE;ompF Outer membrane pore protein E;Outer membrane protein F no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 3 3 3 1 1 2 1 2 2 2 2 2 2 2 2 27.807 26.514 1;2 0.0074891 12060 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.093 73.206 707770000 9130400 12807000 12217000 10076000 6866400 7776900 15996000 17577000 16946000 51743000 57395000 55012000 19966000 20376000 20059000 15230000 13000000 14585000 76434000 61463000 56925000 50173000 43877000 42142000 11627 75;74 11321 219003;219004;219005;219006;219007;219008;219009;219010;219011;219012;219013;219014;219015;219016;219017;219018;219019;219020;219021;219022;219023;219024;219025;219026;219027;219028;219029;219030;219031;219032;219033;219034;219035;219036;219037;219038;219039;219040;219041;219042;219043;219044 134412;134413;134414;134415;134416;134417;134418;134419;134420;134421;134422;134423;134424;134425;134426;134427;134428;134429;134430;134431;134432;134433;134434;134435;134436 134431 25 LAFALSK Unmodified 748.44833 0.44832557 398 P0A855 tolB Protein TolB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.795 26.545 2 0.0012711 12022 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 132.96 106.48 912900000 66542000 59689000 63157000 15046000 9630600 9943800 64127000 59114000 56613000 14894000 14933000 11273000 50745000 55043000 49749000 0 3423100 4366100 101590000 79126000 84718000 13196000 13183000 12800000 11628 398 11322 219045;219046;219047;219048;219049;219050;219051;219052;219053;219054;219055;219056;219057;219058;219059;219060;219061;219062;219063;219064;219065;219066;219067;219068 134437;134438;134439;134440;134441;134442;134443;134444;134445;134446;134447;134448;134449;134450;134451;134452;134453;134454;134455;134456;134457;134458 134451 22 LAFDEFDELAGDR Unmodified 1496.6783 0.6783381 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.881 47.605 2 2.5582E-12 23124 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.28 184.74 2903900000 184790000 194450000 157770000 5523800 6704300 5891800 244990000 252650000 245610000 14946000 15067000 0 229200000 211580000 198470000 7734200 4983600 0 294690000 287370000 274720000 20077000 25208000 21460000 11629 651 11323 219069;219070;219071;219072;219073;219074;219075;219076;219077;219078;219079;219080;219081;219082;219083;219084;219085;219086;219087;219088;219089;219090 134459;134460;134461;134462;134463;134464;134465;134466;134467;134468;134469;134470;134471;134472;134473;134474;134475 134471 16 LAFELQVR Unmodified 974.55492 0.5549159 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.673 35.109 2 8.1081E-05 16821 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.89 76.863 314560000 63150000 59726000 44425000 1048200 1232100 1193500 0 0 0 0 0 0 10871000 11176000 13562000 0 0 0 40694000 35111000 32374000 0 0 0 11630 65 11324 219091;219092;219093;219094;219095;219096;219097;219098;219099;219100;219101;219102 134476;134477;134478;134479;134480;134481;134482;134483;134484;134485;134486;134487 134481 10 LAFEPGVIPELLK Unmodified 1424.8279 0.82790287 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.898 52.46 2 5.4328E-06 25897 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.42 122.72 462320000 51422000 57529000 48545000 4528200 4220100 3404400 29190000 24410000 28525000 6597100 5981200 4074300 33006000 33741000 29716000 0 0 0 33968000 30534000 32926000 0 0 0 11631 139 11325 219103;219104;219105;219106;219107;219108;219109;219110;219111;219112;219113;219114;219115;219116;219117;219118;219119;219120 134488;134489;134490;134491;134492;134493;134494;134495;134496;134497;134498;134499;134500;134501;134502 134497 15 LAFFPNR Unmodified 863.46537 0.46537261 961 P0AFR2 dauA C4-dicarboxylic acid transporter DauA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 33.285 31.693 2 0.013978 15259 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 83.229 65.462 21789000 0 0 0 0 0 0 4264500 4800400 4839600 0 0 0 1898200 0 2619000 0 0 0 3367800 0 0 0 0 0 11632 961 11326 219121;219122;219123;219124;219125;219126 134503;134504 134504 2 LAFLDCLSNLTR Unmodified 1421.7337 0.7336849 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.577 52.143 2 2.3493E-23 25564 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 236.56 230.01 677900000 142770000 135710000 123590000 0 2570000 2545100 59500000 60508000 54613000 3107600 2922800 3149800 10537000 10525000 9947400 0 0 0 21405000 18397000 16108000 0 0 0 11633 1376 11327 219127;219128;219129;219130;219131;219132;219133;219134;219135;219136;219137;219138;219139;219140;219141;219142;219143 134505;134506;134507;134508;134509;134510;134511;134512;134513;134514;134515;134516 134512 12 LAGDLETLR Unmodified 986.53966 0.53965977 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.723 24.655 2 8.9344E-06 9004 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 168.23 107.88 289500000 24335000 0 17334000 2790500 0 2825600 21659000 20607000 21104000 7741300 10476000 9023500 18270000 18022000 20488000 3238600 2876100 3109300 33130000 34606000 0 6802400 5627500 5435700 11634 486 11328 219144;219145;219146;219147;219148;219149;219150;219151;219152;219153;219154;219155;219156;219157;219158;219159;219160;219161;219162;219163;219164 134517;134518;134519;134520;134521;134522;134523;134524;134525;134526;134527;134528;134529;134530 134520 14 LAGEGEAGEHGAPAGDLYVQVQVK Unmodified 2394.1816 0.18155278 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 31.245 29.328 3 8.4847E-05 11524 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.98 77.927 29322000 0 0 0 1878600 1542000 2228500 0 0 0 5190300 4915500 3586800 0 0 0 0 0 0 0 0 0 1762900 3989700 4227500 11635 190 11329 219165;219166;219167;219168;219169;219170;219171;219172;219173 134531;134532;134533 134531 3 LAGELTPFVLHVAAR Unmodified 1592.9039 0.90386178 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.863 39.999 3 0.058302 16481 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 35.809 30.671 60952000 11510000 0 7033100 0 0 0 4705800 0 5332300 3492800 2981200 0 0 4164000 3716300 0 0 0 7106300 5447000 5463600 0 0 0 11636 1609 11330 219174;219175;219176;219177;219178;219179;219180;219181;219182;219183;219184 134534 134534 1 LAGEQATER Unmodified 973.48287 0.48287317 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 2 2 1 2 2 2 1 1 2 2 2 1 1 1 10.945 11.587 2 4.4453E-08 2719 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 194.44 123.75 1517600000 25447000 22153000 22092000 6308500 7925900 6191200 215780000 184230000 190090000 36910000 36545000 38721000 146330000 146970000 138540000 0 11550000 16757000 76933000 78857000 91275000 5695100 5925300 6367500 11637 25 11331 219185;219186;219187;219188;219189;219190;219191;219192;219193;219194;219195;219196;219197;219198;219199;219200;219201;219202;219203;219204;219205;219206;219207;219208;219209;219210;219211;219212;219213;219214;219215;219216 134535;134536;134537;134538;134539;134540;134541;134542;134543;134544;134545;134546;134547;134548;134549;134550;134551;134552 134551 18 LAGETLSEHEVAQFK Unmodified 1657.8312 0.83115034 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 1 2 2 2 2 2 2 2 2 1 25.466 24.36 2;3 1.4333E-11 11244 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 184.03 177.59 753710000 124440000 115870000 20003000 0 0 0 100470000 83741000 100770000 0 0 0 44690000 46384000 41839000 0 0 0 26382000 25136000 23991000 0 0 0 11638 427 11332 219217;219218;219219;219220;219221;219222;219223;219224;219225;219226;219227;219228;219229;219230;219231;219232;219233;219234;219235;219236;219237;219238 134553;134554;134555;134556;134557 134553 4 LAGGVAVIK Unmodified 826.52764 0.52763852 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 1 1 20.594 20.759 2 0.00077017 6413 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 101.69 60.389 22400000000 1751600000 1774800000 1304300000 77435000 60824000 71072000 2216100000 2171800000 2126100000 72807000 62240000 50011000 1639200000 1328700000 1253600000 0 0 0 2059600000 2127200000 2095100000 54824000 49716000 52611000 11639 240 11333 219239;219240;219241;219242;219243;219244;219245;219246;219247;219248;219249;219250;219251;219252;219253;219254;219255;219256;219257;219258;219259;219260;219261;219262 134558;134559;134560;134561;134562;134563;134564;134565;134566;134567;134568;134569;134570;134571;134572;134573;134574;134575;134576;134577;134578;134579;134580;134581;134582;134583;134584;134585;134586;134587;134588;134589;134590;134591;134592;134593;134594;134595;134596;134597;134598 134566 41 LAGHQTIR Unmodified 894.50355 0.50354903 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.392 11.208 2 9.7654E-05 2439 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 161.6 124.58 1391900000 82759000 88815000 72971000 0 0 0 189310000 224500000 196270000 0 0 0 103770000 94786000 107210000 0 0 0 85859000 78716000 66916000 0 0 0 11640 214 11334 219263;219264;219265;219266;219267;219268;219269;219270;219271;219272;219273;219274 134599;134600;134601;134602;134603;134604;134605;134606;134607;134608 134607 10 LAGINAAR Unmodified 784.45554 0.45553621 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 11.712 12.429 2 0.017381 3619 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 66.994 26.631 339050000 68082000 80301000 71415000 0 0 0 37709000 41110000 40429000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11641 433 11335 219275;219276;219277;219278;219279;219280;219281;219282;219283 134609;134610;134611;134612;134613 134612 5 LAGITVPDR Unmodified 940.53418 0.53418046 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.155 25.005 2 0.00053834 11526 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.66 97.25 595900000 0 59919000 0 9268600 7346000 7012400 152540000 160740000 0 35108000 32163000 32517000 0 0 0 9652200 5143700 6666600 0 0 0 25277000 25667000 26886000 11642 1426 11336 219284;219285;219286;219287;219288;219289;219290;219291;219292;219293;219294;219295;219296;219297;219298 134614;134615;134616;134617;134618;134619 134616 6 LAGITVPDRVNVIR Unmodified 1521.8991 0.89911075 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.254 31.771 3 0.00013798 12053 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 80.312 73.625 151130000 0 0 0 7490200 6354600 7314400 0 0 0 17582000 18753000 17297000 0 0 0 9002400 11883000 8413500 0 0 0 18730000 14399000 13912000 11643 1426 11337 219299;219300;219301;219302;219303;219304;219305;219306;219307;219308;219309;219310 134620;134621 134621 2 LAGLHVLR Unmodified 877.54977 0.54977095 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.877 20.155 2 0.00011502 7798 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 158.16 104.97 482760000 28219000 25698000 28554000 1248300 1069500 1264100 47709000 33445000 36782000 3681500 4193800 2973300 42831000 42598000 32561000 2500200 0 0 44455000 44470000 52217000 2250600 1849200 2191300 11644 294 11338 219311;219312;219313;219314;219315;219316;219317;219318;219319;219320;219321;219322;219323;219324;219325;219326;219327;219328;219329;219330;219331;219332;219333;219334 134622;134623;134624;134625;134626;134627;134628;134629;134630;134631;134632;134633;134634;134635;134636;134637 134631 16 LAGLVGPGR Unmodified 838.50249 0.5024864 764 P0AD12 yeeZ Protein YeeZ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.272 21.62 2 0.00080699 8966 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.74 79.195 716480000 64518000 56730000 55247000 0 0 0 88598000 79240000 88197000 0 0 0 48264000 46952000 50397000 0 0 0 46275000 47820000 44246000 0 0 0 11645 764 11339 219335;219336;219337;219338;219339;219340;219341;219342;219343;219344;219345;219346 134638;134639;134640 134638 3 LAGLYGVK Unmodified 819.48544 0.48543935 1240 P24193 hypE Hydrogenase isoenzymes formation protein HypE yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.442 23.312 2 0.016473 10294 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 68.485 34.969 52586000 0 0 1972500 0 0 0 10109000 7066700 7506300 1639200 1718200 1493400 8808100 2308900 7794100 0 0 0 0 0 0 1046800 1123600 0 11646 1240 11340 219347;219348;219349;219350;219351;219352;219353;219354;219355;219356;219357;219358 134641;134642;134643;134644 134642 4 LAGMTGTADTEAFEFSSIYK Unmodified 2137.9878 0.98778692 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 48.825 47.592 2;3 4.5027E-30 19289 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 151.39 150.15 874070000 34829000 29791000 26246000 4993400 3702000 3752200 44691000 42284000 47037000 72945000 76703000 69579000 39398000 36305000 35802000 19728000 21269000 22784000 48274000 55548000 49001000 29463000 26948000 32999000 11647 1057 11341 219359;219360;219361;219362;219363;219364;219365;219366;219367;219368;219369;219370;219371;219372;219373;219374;219375;219376;219377;219378;219379;219380;219381;219382;219383;219384;219385;219386;219387;219388;219389;219390;219391;219392;219393;219394;219395;219396;219397;219398;219399;219400;219401;219402;219403;219404;219405;219406 134645;134646;134647;134648;134649;134650;134651;134652;134653;134654;134655;134656;134657;134658;134659;134660;134661;134662;134663;134664;134665;134666;134667;134668;134669;134670;134671;134672;134673;134674;134675;134676;134677;134678;134679 134652 35 LAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR Unmodified 3729.8746 0.87461842 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.35 50.41 4 0.11403 20280 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 34.839 33.366 36361000 0 0 0 0 0 2552300 0 0 0 7469600 7976900 0 0 0 0 6131200 0 4215300 0 0 0 0 0 8016000 11648 1057 11342 219407;219408;219409;219410;219411;219412 134680 134680 0 LAGTGEMVAEVTER Unmodified 1461.7133 0.71334339 1003 P0AGB0 serB Phosphoserine phosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 31.351 29.948 2 8.0564E-06 14157 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 109.24 88.366 79236000 7711000 5782400 7869400 0 0 0 9721600 8111900 8118500 0 0 0 9670900 9789000 0 0 0 0 12461000 0 0 0 0 0 11649 1003 11343 219413;219414;219415;219416;219417;219418;219419;219420;219421 134681;134682 134681 2 LAGTGYLSILPVDQGVEHSAGASFAANPLYFDPK Unmodified 3504.7565 0.75653542 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 54.091 52.613 3 1.1871E-18 26041 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.17 136.32 262490000 39203000 38879000 34105000 0 0 0 46186000 48495000 39758000 0 0 0 0 0 0 0 0 0 0 9435700 6429400 0 0 0 11650 498 11344 219422;219423;219424;219425;219426;219427;219428;219429 134683;134684 134684 2 LAGVISTIHPTLDYAGFDR Unmodified 2045.0582 0.058190166 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 43.628 42.258 2;3 2.5211E-22 20484 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 222.79 210.23 565650000 204290000 182420000 169230000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9710600 0 0 0 0 0 11651 1173 11345 219430;219431;219432;219433;219434;219435;219436 134685;134686;134687;134688;134689 134688 5 LAGWVQIQELFWQYAEK Unmodified 2108.0731 0.073111949 1985 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 2 1 2 2 1 1 2 1 1 41.488 39.739 3 0.16417 18203 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 5.2949 0 1061500000 28586000 20172000 18397000 0 0 0 135510000 123310000 158270000 0 0 528300 126990000 118400000 60054000 0 0 0 70025000 130990000 69188000 0 1061500 0 + 11652 1985 11346 219437;219438;219439;219440;219441;219442;219443;219444;219445;219446;219447;219448;219449;219450;219451;219452;219453;219454 134690;134691;134692;134693 134690 4 LAHAMGAHVVAFTTSEAK Unmodified 1839.9302 0.93015288 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 3 3 19.76 20.364 2;3;4 5.3685E-56 7821 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 291.57 273.38 924610000 220190000 320040000 384380000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11653 1762 11347 219455;219456;219457;219458;219459;219460;219461;219462 134694;134695;134696;134697;134698;134699 134695 6 LAHEAQLDVAPLGK Unmodified 1460.7987 0.798728 1003 P0AGB0 serB Phosphoserine phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 24.585 23.59 2;3 1.7034E-06 9844 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.551 95.189 614020000 65119000 57152000 48135000 0 0 0 48367000 53024000 40988000 0 2037800 1830200 43694000 34798000 34411000 0 0 0 64156000 58186000 59341000 2780100 0 0 11654 1003 11348 219463;219464;219465;219466;219467;219468;219469;219470;219471;219472;219473;219474;219475;219476;219477;219478;219479;219480;219481;219482;219483;219484;219485;219486;219487;219488;219489 134700;134701;134702;134703;134704;134705;134706;134707;134708;134709;134710;134711;134712 134712 13 LAHGNGEYLIHGTSAPDSVGLR Unmodified 2263.1345 0.13454301 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 2 1 1 1 24.991 23.812 3;4 2.8855E-15 10804 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.87 106.05 254410000 80579000 29192000 20850000 0 0 991200 21042000 75902000 18699000 2810300 0 0 0 0 0 0 0 0 0 4347900 0 0 0 0 11655 1831 11349 219490;219491;219492;219493;219494;219495;219496;219497;219498;219499;219500 134713;134714;134715;134716 134715 4 LAHPIIPFITETIWQR Unmodified 1934.0778 0.077803396 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 52.689 51.394 2;3 1.1316E-24 24840 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 178.58 162.46 1385200000 124210000 136480000 110080000 0 0 0 106740000 98955000 99591000 1105800 1858900 1870600 93374000 85202000 92677000 0 0 0 157000000 139900000 136130000 0 0 0 11656 158 11350 219501;219502;219503;219504;219505;219506;219507;219508;219509;219510;219511;219512;219513;219514;219515;219516;219517;219518;219519;219520;219521;219522;219523;219524;219525;219526;219527 134717;134718;134719;134720;134721;134722;134723;134724;134725;134726;134727;134728;134729;134730;134731;134732 134723 13 LAHPQLEALLR Unmodified 1259.735 0.73500553 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.319 29.963 3 1.4303E-07 13879 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.78 154.01 350830000 42815000 36098000 31846000 0 0 0 31027000 24747000 24954000 0 0 0 22314000 19656000 18914000 0 0 0 33840000 31983000 32633000 0 0 0 11657 953 11351 219528;219529;219530;219531;219532;219533;219534;219535;219536;219537;219538;219539 134733;134734;134735;134736;134737;134738;134739;134740;134741;134742;134743;134744 134741 12 LAHQERPTAGSTLWLHLAENQLHLFDGETGQR Unmodified 3624.8186 0.8185756 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 2 2 2 2 2 1 2 44.988 43.385 4;5 3.6411E-14 21231 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.57 132.16 575470000 0 0 0 0 0 0 10827000 10070000 0 0 0 6099200 12244000 49297000 50528000 0 0 0 114300000 156190000 130910000 13626000 9578300 11810000 11658 1064 11352 219540;219541;219542;219543;219544;219545;219546;219547;219548;219549;219550;219551;219552;219553;219554;219555;219556;219557;219558 134745;134746;134747;134748;134749;134750;134751;134752 134747 8 LAHQERPTAGSTLWLHLAENQLHLFDGETGQRV Unmodified 3723.887 0.88698952 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 3 3 3 1 1 1 1 3 3 3 46.523 44.654 4;5;6 9.3312E-14 17611 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 127 123.93 269100000 0 0 0 3666300 2476300 2081400 0 0 0 25234000 33924000 27074000 1804800 4279900 0 0 0 0 4781500 6838400 0 46344000 64471000 46123000 11659 1064 11353 219559;219560;219561;219562;219563;219564;219565;219566;219567;219568;219569;219570;219571;219572;219573;219574;219575;219576;219577;219578;219579;219580;219581;219582;219583;219584 134753;134754;134755;134756;134757;134758;134759;134760;134761;134762;134763;134764;134765;134766;134767;134768;134769 134768 16 LAHTTSVDEVLELLAGR Unmodified 1822.9789 0.97887721 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.698 51.521 3 2.1303E-24 24057 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 204.28 193.42 774100000 52987000 43495000 29493000 6488000 3697100 6307800 91526000 84280000 73988000 26123000 23125000 28084000 48990000 41978000 45944000 3324600 6195200 11271000 40979000 45755000 40196000 7487500 7307700 5078100 11660 33 11354 219585;219586;219587;219588;219589;219590;219591;219592;219593;219594;219595;219596;219597;219598;219599;219600;219601;219602;219603;219604;219605;219606;219607;219608 134770;134771;134772;134773;134774;134775;134776;134777;134778;134779;134780;134781;134782;134783;134784;134785 134785 16 LAHTTSVDEVLELLAGRK Unmodified 1951.0738 0.07384023 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 2 1 47.076 45.279 3;4 5.2099E-07 18222 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 104.2 100.53 143930000 0 0 0 8956700 14326000 10910000 0 0 0 25876000 25918000 35273000 0 0 0 0 0 0 0 0 0 6548100 11151000 4968900 11661 33 11355 219609;219610;219611;219612;219613;219614;219615;219616;219617;219618;219619;219620;219621;219622;219623;219624 134786;134787;134788;134789;134790;134791;134792;134793;134794;134795 134788 10 LAHYYCEINVLHPFR Unmodified 1930.9512 0.95122267 1166 P20605 fic Probable adenosine monophosphate-protein transferase fic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 1 2 1 2 34.864 33.397 3;4 6.0862E-07 16467 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.76 108.7 578270000 102550000 85262000 76534000 0 0 0 87420000 74280000 77753000 0 0 0 11249000 8669900 4365100 0 0 0 18909000 13125000 18151000 0 0 0 11662 1166 11356 219625;219626;219627;219628;219629;219630;219631;219632;219633;219634;219635;219636;219637;219638;219639;219640;219641;219642;219643;219644;219645;219646 134796;134797;134798;134799;134800;134801;134802;134803;134804;134805 134797 10 LAIAASSLWK Unmodified 1058.6124 0.61243078 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.292 37.535 2 5.0374E-05 13008 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 135.83 122.25 11624000000 3366900000 2539700000 2635900000 11281000 13160000 12918000 414550000 375830000 407460000 3079100 0 1385200 273730000 246090000 255930000 0 0 0 320270000 380260000 363650000 1601700 0 0 11663 1217 11357 219647;219648;219649;219650;219651;219652;219653;219654;219655;219656;219657;219658;219659;219660;219661;219662;219663;219664;219665;219666;219667 134806;134807;134808;134809;134810;134811;134812;134813;134814;134815;134816;134817;134818;134819;134820;134821;134822;134823;134824;134825;134826;134827;134828 134814 20 LAIAHSADQQALNGGQMGWGR Unmodified 2180.0545 0.054518547 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.58 29.056 3 3.6302E-15 13100 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 137.45 132.83 801170000 78768000 89471000 63622000 0 0 0 59726000 67156000 58317000 1348500 1415600 0 55409000 51881000 56108000 0 0 0 70847000 72207000 74898000 0 0 0 11664 688 11358 219668;219669;219670;219671;219672;219673;219674;219675;219676;219677;219678;219679;219680;219681 134829;134830;134831;134832;134833;134834;134835;134836;134837;134838;134839;134840 134838 12 LAIALAQEGGIGFIHK Unmodified 1636.9301 0.93007653 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 1 1 1 4 3 3 1 1 2 3 2 1 1 3 3 3 1 1 1 41.89 40.252 2;3 9.0702E-31 19567 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 236.77 235.01 3740900000 312780000 307930000 260800000 3141700 2555200 2304800 296480000 269520000 258230000 2709000 0 2098400 315970000 282660000 300330000 2363600 1849800 0 374490000 359600000 364890000 7609600 7466700 5079600 11665 788 11359 219682;219683;219684;219685;219686;219687;219688;219689;219690;219691;219692;219693;219694;219695;219696;219697;219698;219699;219700;219701;219702;219703;219704;219705;219706;219707;219708;219709;219710;219711;219712;219713;219714;219715;219716;219717;219718;219719;219720;219721;219722;219723;219724;219725;219726;219727 134841;134842;134843;134844;134845;134846;134847;134848;134849;134850;134851;134852;134853;134854;134855;134856;134857;134858;134859;134860;134861;134862;134863;134864;134865;134866;134867;134868;134869;134870;134871;134872 134846 29 LAICGTANDVAVSGAIPR Unmodified 1783.9251 0.9250675 1240 P24193 hypE Hydrogenase isoenzymes formation protein HypE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.916 35.148 2 2.8338E-17 17246 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 170.18 146.81 113600000 6580400 4666500 2769100 0 891220 569050 11236000 12388000 12454000 4354100 3906700 3730000 6727500 7297900 8591100 1148300 0 0 7834300 6981300 7672100 1274400 1180500 1343300 11666 1240 11360 219728;219729;219730;219731;219732;219733;219734;219735;219736;219737;219738;219739;219740;219741;219742;219743;219744;219745;219746;219747;219748 134873;134874;134875;134876;134877;134878;134879 134878 7 LAIFHLR Unmodified 868.52831 0.52830722 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.333 27.191 2 0.00065686 13070 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.76 103.19 436080000 35579000 30240000 35045000 0 0 0 0 0 43326000 0 0 0 35265000 30045000 32476000 0 0 0 63616000 64043000 66449000 0 0 0 11667 29 11361 219749;219750;219751;219752;219753;219754;219755;219756;219757;219758;219759;219760 134880;134881;134882;134883;134884;134885;134886 134880 6 LAIIFASR Unmodified 889.53854 0.53853756 1263 P25552 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 36.41 34.911 2 0.0010424 16858 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 112.37 102.19 32488000 4948400 4492900 2509000 0 0 0 2815900 0 0 0 0 0 3076200 2094600 0 0 0 0 4670700 3642300 4238300 0 0 0 11668 1263 11362 219761;219762;219763;219764;219765;219766;219767;219768;219769 134887;134888 134888 2 LAIIGNGMVGHR Unmodified 1236.6761 0.67611045 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 25.03 24.011 3 0.010663 10777 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 54.343 51.042 42533000 0 0 0 0 0 0 3518400 4179900 0 0 0 0 4180900 5971700 3352200 0 0 0 8480900 6143300 6706000 0 0 0 11669 180 11363 219770;219771;219772;219773;219774;219775;219776;219777 134889;134890 134889 2 LAIISVVGDGMR Unmodified 1229.6802 0.68019277 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.239 41.566 2 4.2714E-08 19286 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 157.96 128.87 1061700000 173400000 180910000 166190000 2291000 2460500 2218600 40611000 37624000 29983000 855970 0 0 52558000 50126000 45156000 0 0 0 91871000 95007000 87678000 1126000 828710 839550 11670 34 11364 219778;219779;219780;219781;219782;219783;219784;219785;219786;219787;219788;219789;219790;219791;219792;219793;219794;219795;219796 134891;134892;134893;134894;134895;134896;134897;134898;134899;134900;134901;134902;134903;134904;134905 134905 15 LAILLAVLHR Unmodified 1117.7335 0.73354897 1250 P24554 radA DNA repair protein RadA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.028 43.331 3 0.0052842 20903 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 64.04 64.04 34270000 3770200 3897500 3437000 823090 950410 918340 0 0 0 3898600 4614400 3079500 1014000 0 992930 0 0 0 0 0 1782800 2003200 1843200 1244800 11671 1250 11365 219797;219798;219799;219800;219801;219802;219803;219804;219805;219806;219807;219808;219809;219810;219811 134906;134907 134907 2 LAILNFGTLMPEAAK Unmodified 1587.8695 0.8694501 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.948 52.704 2 0.00010475 25811 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.08 109.18 358660000 25787000 23920000 23958000 6630200 5888800 7216700 16041000 17507000 16069000 6808800 9715600 12057000 23049000 20016000 18632000 4835700 4400000 4394200 26944000 33571000 25353000 8572000 7330500 9968400 11672 1909 11366 219812;219813;219814;219815;219816;219817;219818;219819;219820;219821;219822;219823;219824;219825;219826;219827;219828;219829;219830;219831;219832;219833;219834;219835 134908;134909;134910;134911 134909 4 LAIMEQYVGK Unmodified 1150.6056 0.60563084 1768 P75767 ybhK Putative gluconeogenesis factor yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 32.802 31.537 2 0.037766 14438 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 57.859 54.112 30844000 7307200 8462200 6423700 0 0 0 0 0 0 0 0 0 5044300 0 0 0 0 0 0 0 3606200 0 0 0 11673 1768 11367 219836;219837;219838;219839;219840 134912;134913;134914 134914 1 LAIVGRPNVGK Unmodified 1122.6873 0.68732706 268 P0A6P5 der GTPase Der yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 16.88 17.661 2 0.00035379 6292 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 119.41 102.17 41682000 8645700 9405700 8221800 0 0 0 0 2301000 0 0 0 0 1802800 0 2086700 0 0 0 3147300 3263900 2807000 0 0 0 11674 268 11368 219841;219842;219843;219844;219845;219846;219847;219848;219849 134915;134916;134917 134916 3 LAIVPDHPLLK Unmodified 1214.7387 0.73869393 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 31.574 30.153 2;3 0.0026196 14033 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 76.221 65.057 1716700000 192430000 186900000 167210000 1985700 1469900 1585100 119770000 113950000 112160000 1086200 0 0 107520000 90029000 121000000 0 0 0 174940000 159230000 165410000 0 0 0 11675 1348 11369 219850;219851;219852;219853;219854;219855;219856;219857;219858;219859;219860;219861;219862;219863;219864;219865;219866;219867;219868;219869;219870;219871;219872;219873;219874;219875;219876;219877 134918;134919;134920;134921;134922;134923;134924;134925;134926;134927;134928;134929;134930 134926 13 LALAMPSSALVDTYSR Unmodified 1693.8709 0.87090667 772 P0AD68 ftsI Peptidoglycan synthase FtsI yes yes 0 0 0 By matching By MS/MS 1 1 47.608 45.555 2 0.00044628 18542 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 73.848 65.119 6605300 0 0 0 0 0 0 4498800 0 0 2106500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11676 772 11370 219878;219879 134931 134931 0 LALCDIASGEISQAK Unmodified 1574.7974 0.79740737 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 1 39.318 37.602 2;3 2.4901E-15 17458 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 237.68 214.76 1836400000 86472000 85085000 81644000 0 0 0 225460000 210360000 211990000 0 0 1919500 156660000 161160000 149750000 0 0 0 160870000 149640000 154360000 1024700 0 0 11677 285 11371 219880;219881;219882;219883;219884;219885;219886;219887;219888;219889;219890;219891;219892;219893;219894;219895;219896;219897;219898;219899;219900;219901;219902;219903;219904;219905 134932;134933;134934;134935;134936;134937;134938;134939;134940;134941;134942;134943;134944;134945;134946;134947;134948 134947 16 LALDLEIATYR Unmodified 1276.7027 0.70270235 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.229 44.905 2 1.2608E-06 18019 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 185.81 0 309260000 0 0 0 10952000 10523000 9683400 0 0 0 55508000 54607000 63166000 0 0 0 5804900 5724800 5008300 0 0 0 25334000 33039000 29908000 + 11678 11 11372 219906;219907;219908;219909;219910;219911;219912;219913;219914;219915;219916;219917 134949;134950;134951;134952;134953;134954;134955;134956;134957;134958;134959;134960;134961;134962;134963 134954 12 LALDLLEQIK Unmodified 1154.6911 0.69107503 534 P0A9L5 ppiC Peptidyl-prolyl cis-trans isomerase C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.951 48.715 2 2.2162E-05 24074 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.94 140.05 2211600000 178940000 150870000 132270000 4270900 4132200 3643000 193790000 179030000 176610000 4676100 4171400 3226600 173450000 148900000 145950000 4072500 5236000 5474500 245560000 216310000 221980000 3941700 2374800 2737200 11679 534 11373 219918;219919;219920;219921;219922;219923;219924;219925;219926;219927;219928;219929;219930;219931;219932;219933;219934;219935;219936;219937;219938;219939;219940;219941 134964;134965;134966;134967;134968;134969;134970;134971;134972;134973;134974;134975;134976;134977;134978;134979 134967 16 LALDWQQR Unmodified 1028.5403 0.54032847 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.158 29.803 2 5.0089E-07 11088 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 199.55 106.28 568810000 0 0 0 0 0 0 44504000 44879000 39614000 4030900 0 10510000 53527000 52474000 59996000 13727000 9862500 9541300 63417000 63900000 60734000 13236000 12285000 12574000 11680 1445 11374 219942;219943;219944;219945;219946;219947;219948;219949;219950;219951;219952;219953;219954;219955;219956;219957;219958 134980;134981;134982;134983;134984;134985;134986;134987;134988;134989;134990;134991;134992 134985 13 LALEAGLLTLDDDYSK Unmodified 1735.888 0.88799652 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 52.204 50.943 2 0.12594 24846 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 49.929 34.39 223300000 0 0 0 0 0 0 27085000 25306000 24949000 0 0 0 19376000 17009000 16385000 0 0 0 28384000 32009000 32796000 0 0 0 11681 51 11375 219959;219960;219961;219962;219963;219964;219965;219966;219967 134993 134993 0 LALEELDESQQQR Unmodified 1557.7635 0.76346471 991 P0AG76 sbcD Nuclease SbcCD subunit D yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 30.105 28.78 2 3.871E-12 13400 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 180.67 173.98 62542000 6666000 5956300 4602800 0 0 0 5345300 4883100 0 0 0 0 3806800 4236200 5203400 0 0 0 6700100 7141500 8000200 0 0 0 11682 991 11376 219968;219969;219970;219971;219972;219973;219974;219975;219976;219977;219978 134994;134995;134996;134997;134998;134999 134995 5 LALEGYLAIAPELYFR Unmodified 1837.9978 0.99782174 1614 P56262 ysgA Putative carboxymethylenebutenolidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 55.355 53.888 2 9.4366E-09 26855 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 174.23 168.74 161090000 53061000 48601000 48662000 0 0 0 0 10766000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11683 1614 11377 219979;219980;219981;219982 135000;135001;135002 135000 3 LALFDQFPYTHHMECGVLLTAK Unmodified 2590.2712 0.27123618 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 46.774 45.461 4 6.4488E-05 22013 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 81.884 75.325 166710000 15159000 21864000 21285000 0 0 0 0 0 21351000 0 0 0 16057000 8431500 14662000 0 0 0 26882000 0 21017000 0 0 0 11684 1203 11378 219983;219984;219985;219986;219987;219988;219989;219990;219991 135003;135004;135005;135006;135007;135008;135009;135010;135011 135005 9 LALIGEK Unmodified 742.45889 0.45889025 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 23.166 22.48 2 0.028749 9858 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 68.312 21.51 203280000 7606100 6112200 8119500 0 0 0 5236500 152730000 0 0 0 0 4707900 3516800 3159100 0 0 0 5927600 0 6162000 0 0 0 11685 1172 11379 219992;219993;219994;219995;219996;219997;219998;219999;220000;220001 135012 135012 1 LALKPGSEYHYPR Unmodified 1529.7991 0.79906235 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 17.724 18.051 3;4 1.6716E-05 6876 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.964 67.171 321480000 0 0 0 0 0 0 19123000 54612000 22541000 19655000 14964000 14079000 32797000 30567000 31376000 2946700 2660500 3100200 9163800 26572000 26064000 5708700 2548900 3005300 11686 600 11380 220002;220003;220004;220005;220006;220007;220008;220009;220010;220011;220012;220013;220014;220015;220016;220017;220018;220019;220020;220021;220022;220023;220024;220025;220026;220027;220028;220029;220030;220031;220032 135013;135014;135015;135016;135017;135018;135019;135020;135021 135018 9 LALLEQR Unmodified 841.50215 0.50215205 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 2 2 25.035 24.023 2 2.4177E-12 8656 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 178.02 131.22 2015600000 125010000 143000000 119420000 14260000 13194000 15339000 187550000 195320000 190820000 2200500 34536000 0 147200000 133130000 116630000 8156100 5986800 5266500 160660000 176570000 186760000 3039600 14296000 17212000 11687 1962 11381 220033;220034;220035;220036;220037;220038;220039;220040;220041;220042;220043;220044;220045;220046;220047;220048;220049;220050;220051;220052;220053;220054;220055;220056;220057;220058;220059;220060;220061;220062;220063;220064 135022;135023;135024;135025;135026;135027;135028;135029;135030;135031;135032;135033;135034;135035;135036;135037;135038;135039;135040;135041;135042 135024 21 LALLNLLK Unmodified 896.60589 0.60588884 1985 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 43.426 41.718 2 0.0035039 20719 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 91.584 86.497 36588000 0 0 0 0 0 0 8658800 7702600 9226400 0 0 0 1745500 1772200 0 0 0 0 0 3462400 4019700 0 0 0 + 11688 1985 11382 220065;220066;220067;220068;220069;220070;220071;220072;220073;220074 135043;135044;135045 135044 3 LALMNCLLHDIEGNLDHGGAIR Unmodified 2431.21 0.21003291 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 52.252 51.129 4 1.125E-21 24932 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.04 151.68 485190000 38556000 33310000 34672000 0 0 1359700 42334000 0 33176000 0 0 0 37696000 36769000 37425000 0 0 3732400 65117000 61958000 59088000 0 0 0 11689 194 11383 220075;220076;220077;220078;220079;220080;220081;220082;220083;220084;220085;220086;220087 135046;135047;135048;135049;135050;135051;135052;135053 135047 8 LALMPQR Unmodified 827.46874 0.46874343 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 2 1 1 23.682 22.915 2 0.0012713 9834 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.67 104.36 1608100000 0 0 303760000 0 0 0 460200000 2253100 0 0 0 0 170820000 172750000 153030000 0 0 0 1785700 166500000 177020000 0 0 0 11690 1086 11384 220088;220089;220090;220091;220092;220093;220094;220095;220096;220097;220098;220099;220100;220101 135054;135055;135056;135057;135058;135059;135060;135061;135062;135063;135064;135065 135060 11 LALNGALTVGTLDGANVEIAEK Unmodified 2168.1689 0.16886283 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 49.606 48.047 2;3 3.6808E-07 19119 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 109.81 101.83 29368000 0 0 0 0 0 0 0 0 0 9048500 7730400 7719300 0 0 0 0 0 0 0 0 0 1686400 1751600 1432000 11691 30 11385 220102;220103;220104;220105;220106;220107;220108;220109;220110 135066;135067;135068;135069 135069 4 LALPLHPEYR Unmodified 1207.6713 0.67134264 1067;1156 P11349;P19318 narH;narY Respiratory nitrate reductase 1 beta chain;Respiratory nitrate reductase 2 beta chain no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 2 2 2 28.793 27.409 2;3 0.00012255 10494 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 112.75 111.5 1767600000 48165000 35548000 0 10213000 11945000 13107000 141400000 138640000 135970000 4285300 28526000 4647500 103800000 114510000 106240000 8368000 5831800 6295700 153280000 155080000 142690000 128440000 132000000 138660000 11692 1067;1156 11386 220111;220112;220113;220114;220115;220116;220117;220118;220119;220120;220121;220122;220123;220124;220125;220126;220127;220128;220129;220130;220131;220132;220133;220134;220135;220136;220137;220138;220139;220140;220141;220142;220143;220144;220145;220146;220147;220148;220149 135070;135071;135072;135073;135074;135075;135076;135077;135078;135079;135080;135081;135082;135083;135084;135085;135086;135087;135088;135089;135090;135091;135092;135093;135094;135095;135096 135073 26 LALSEALASQPESPSVPIHNQIR Unmodified 2456.3023 0.30233662 1499 P37767 yfhH Uncharacterized HTH-type transcriptional regulator YfhH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 35.575 35.664 3 1.6522E-07 12202 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 110.38 102.76 34627000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14044000 11115000 9466800 0 0 0 0 0 0 11693 1499 11387 220150;220151;220152 135097;135098;135099 135099 3 LALSMTIDR Unmodified 1018.5481 0.54811597 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.444 32.004 2 0.00014849 15292 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.06 111.29 157330000 8133100 7265900 10525000 0 0 0 20601000 16873000 18146000 0 0 0 11743000 10205000 11371000 0 0 0 13466000 13983000 15015000 0 0 0 11694 1900 11388 220153;220154;220155;220156;220157;220158;220159;220160;220161;220162;220163;220164 135100;135101;135102;135103;135104;135105;135106;135107;135108 135102 2 LALTPAR Unmodified 740.45447 0.45447358 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.557 18.064 2 0.0012721 6114 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 132.94 60.92 777500000 69970000 76050000 68235000 0 514800 0 90452000 89433000 77059000 2299600 311310 2161700 48883000 50172000 49014000 0 0 0 53168000 51910000 47530000 0 337660 0 11695 148 11389 220165;220166;220167;220168;220169;220170;220171;220172;220173;220174;220175;220176;220177;220178;220179;220180;220181 135109;135110;135111;135112;135113;135114;135115;135116;135117;135118;135119 135119 10 LALYEEIK Unmodified 977.54335 0.54334816 1059 P10442 rnhB Ribonuclease HII yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 31.442 30.029 2 0.054607 14098 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 63.565 56.803 39366000 0 2020800 0 0 0 0 3568900 3067100 3662200 0 0 0 4088100 4566700 4114400 0 0 0 7660000 6617300 0 0 0 0 11696 1059 11390 220182;220183;220184;220185;220186;220187;220188;220189;220190 135120;135121 135120 0 LAMELQAEPIIR Unmodified 1382.7592 0.75917137 1530 P39356 yjhU Uncharacterized transcriptional regulator YjhU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.234 39.262 2 0.0004195 15424 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 99.653 95.766 95109000 8232900 14225000 8543900 0 0 0 7701700 6297100 8607100 6658500 5639200 4876700 0 0 0 0 0 0 6144100 5873100 4664700 2656800 2770900 2217900 11697 1530 11391 220191;220192;220193;220194;220195;220196;220197;220198;220199;220200;220201;220202;220203;220204;220205 135122 135122 1 LAMLDNR Unmodified 831.42727 0.42727255 54 P00936 cyaA Adenylate cyclase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 3 2 2 1 1 2 2 1 2 2 2 2 2 1 1 1 2 1 1 20.493 20.72 2 0.025379 7984 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.715 60.153 969290000 140930000 159540000 44011000 5842400 2882400 2107700 141210000 138890000 65127000 4452300 4119400 3070500 70936000 64461000 45615000 0 0 0 21932000 22606000 28488000 0 1204200 1865500 11698 54 11392 220206;220207;220208;220209;220210;220211;220212;220213;220214;220215;220216;220217;220218;220219;220220;220221;220222;220223;220224;220225;220226;220227;220228;220229;220230;220231;220232;220233;220234;220235;220236;220237;220238 135123;135124;135125 135125 3 LAMLSAPLLITGDTGTGK Unmodified 1757.9597 0.95972167 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 51.679 50.474 2 1.0853E-05 24833 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.5 118.77 62343000 23922000 19017000 19403000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11699 162 11393 220239;220240;220241 135126;135127;135128 135126 3 LAMQVVVLR Unmodified 1027.6212 0.62122133 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.686 35.092 2 5.5567E-08 17406 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 192.28 139.6 2575200000 218230000 241040000 195210000 5519600 5461300 4471200 193330000 216770000 203460000 13719000 14431000 13777000 185270000 180840000 185090000 5953200 3925800 3143100 226750000 227550000 212430000 5967800 6431000 6411500 11700 62 11394 220242;220243;220244;220245;220246;220247;220248;220249;220250;220251;220252;220253;220254;220255;220256;220257;220258;220259;220260;220261;220262;220263;220264;220265 135129;135130;135131;135132;135133;135134;135135;135136;135137;135138;135139;135140;135141;135142;135143;135144;135145;135146;135147;135148;135149;135150;135151;135152 135135 24 LAMYIQGVDSVYDLVWSDGPLGK Unmodified 2525.2512 0.25121225 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 2 2 2 1 1 1 55.617 54.143 2;3 4.1855E-15 19994 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 140.2 137.4 697030000 37905000 35793000 25708000 12800000 14642000 11637000 54554000 69698000 66228000 24628000 23635000 26730000 27173000 26561000 24717000 0 0 0 72155000 58743000 59528000 9548700 8095300 6554000 11701 61 11395 220266;220267;220268;220269;220270;220271;220272;220273;220274;220275;220276;220277;220278;220279;220280;220281;220282;220283;220284;220285;220286;220287;220288;220289;220290;220291;220292 135153;135154;135155;135156;135157;135158;135159;135160;135161;135162;135163;135164;135165;135166;135167 135163 15 LANAGIVVSAGHSNATLK Unmodified 1721.9424 0.94243213 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 2 2 21.616 21.69 2;3 2.2456E-13 8810 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.38 162.74 1056500000 131070000 122330000 113320000 0 0 533960 99888000 89413000 104710000 0 0 0 68789000 62115000 59875000 0 0 0 65297000 67460000 71741000 0 0 0 11702 904 11396 220293;220294;220295;220296;220297;220298;220299;220300;220301;220302;220303;220304;220305;220306;220307;220308;220309;220310;220311;220312;220313;220314;220315;220316 135168;135169;135170;135171;135172;135173;135174;135175;135176;135177;135178;135179;135180;135181;135182 135173 15 LANAPFIK Unmodified 872.51199 0.51198846 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.441 24.389 2 0.00074681 8627 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 124.89 104.33 1915600000 134660000 130030000 115800000 25197000 21966000 20586000 147080000 147050000 138580000 45961000 50775000 44517000 103490000 118700000 104770000 11983000 7811900 9264500 139760000 150000000 153390000 32642000 28987000 32603000 11703 245 11397 220317;220318;220319;220320;220321;220322;220323;220324;220325;220326;220327;220328;220329;220330;220331;220332;220333;220334;220335;220336;220337;220338;220339;220340 135183;135184;135185;135186;135187;135188;135189;135190;135191;135192;135193;135194;135195;135196;135197;135198;135199;135200;135201;135202;135203 135189 21 LANAPFIKVEATK Unmodified 1400.8028 0.80275075 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 26.1 24.686 3 0.0086658 7967 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 43.813 40.348 17671000 0 0 0 5593500 5084600 4624100 0 0 0 2368800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11704 245 11398 220341;220342;220343;220344 135204;135205;135206;135207 135207 4 LANAVGIGAVK Unmodified 1011.6077 0.60767976 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.474 21.919 2 7.9741E-05 9397 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.72 83.452 2216500000 134210000 137840000 114820000 0 0 0 199720000 186050000 166080000 0 0 0 203400000 164530000 150860000 0 0 0 258740000 241890000 258370000 0 0 0 11705 1073 11399 220345;220346;220347;220348;220349;220350;220351;220352;220353;220354;220355;220356 135208;135209;135210;135211;135212;135213;135214;135215;135216;135217;135218;135219 135211 12 LANCHIEVACDVDNPLVGAR Unmodified 2222.0572 0.057220663 1901 P77364 glxK Glycerate kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 33.344 31.956 3 7.9565E-05 15487 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 73.21 68.942 82536000 6206900 8841800 6946400 0 0 0 0 15036000 9995000 0 0 0 6839200 5635600 4178600 0 0 0 8173900 0 10683000 0 0 0 11706 1901 11400 220357;220358;220359;220360;220361;220362;220363;220364;220365;220366 135220;135221;135222 135220 2 LANEGFVAR Unmodified 975.51378 0.51377937 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.429 18.876 2 6.17E-06 7117 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.03 154.65 2293500000 162670000 163270000 133120000 1697800 0 0 217660000 214010000 211060000 3811500 1918000 2271400 157890000 167290000 134270000 0 0 0 248240000 238140000 236180000 0 0 0 11707 158 11401 220367;220368;220369;220370;220371;220372;220373;220374;220375;220376;220377;220378;220379;220380;220381;220382 135223;135224;135225;135226;135227;135228;135229;135230;135231;135232;135233;135234;135235;135236 135227 14 LANELSDAAENK Unmodified 1273.615 0.61500956 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.534 17.973 2 1.0269E-16 6523 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 205.59 190.82 7851200000 1090900000 1121300000 966390000 17034000 12799000 14452000 428950000 411620000 406530000 47219000 38982000 38353000 429240000 441200000 409520000 19556000 14833000 15344000 644720000 642630000 578040000 21692000 19562000 20336000 11708 67 11402 220383;220384;220385;220386;220387;220388;220389;220390;220391;220392;220393;220394;220395;220396;220397;220398;220399;220400;220401;220402;220403;220404;220405;220406 135237;135238;135239;135240;135241;135242;135243;135244;135245;135246;135247;135248;135249;135250;135251;135252;135253;135254;135255;135256;135257;135258;135259;135260 135251 24 LANELSDAAENKGTAVK Unmodified 1729.8846 0.88464248 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 17.259 17.48 2;3 2.6172E-14 4915 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 157.07 157.07 321610000 0 0 0 20779000 12868000 13861000 0 0 0 49375000 40732000 32075000 0 0 0 35452000 26282000 27777000 0 0 0 21374000 25649000 15387000 11709 67 11403 220407;220408;220409;220410;220411;220412;220413;220414;220415;220416;220417;220418;220419;220420;220421;220422;220423;220424;220425;220426;220427;220428;220429;220430 135261;135262;135263;135264;135265;135266;135267;135268;135269;135270;135271;135272;135273;135274;135275;135276;135277;135278;135279 135261 19 LANKPGVHIYNLGAGVGNSVLDVVNAFSK Unmodified 2952.5821 0.58214029 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.001 49.706 4 4.3044E-16 24121 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.11 138.11 167000000 54112000 37390000 53765000 0 0 0 0 10084000 8113600 0 0 0 0 0 0 0 0 0 0 3534900 0 0 0 0 11710 202 11404 220431;220432;220433;220434;220435;220436 135280;135281;135282 135282 3 LANQLVSQTGLR Unmodified 1298.7306 0.73064844 1354 P30871 ygiF Inorganic triphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 26.403 25.192 2 2.1072E-17 11352 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 221.68 156.43 111130000 30401000 24124000 28123000 1551700 1134400 1453300 0 0 0 1159300 0 0 0 0 0 0 0 0 7914500 6161500 8260200 0 0 847530 11711 1354 11405 220437;220438;220439;220440;220441;220442;220443;220444;220445;220446;220447 135283;135284;135285 135283 3 LANQVIVALNIAAMSEALTLATK Unmodified 2354.3243 0.32431761 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.893 54.458 3 0.10539 27170 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 35.812 33.088 22311000 5093000 3681600 5342800 0 0 0 0 264460 0 0 0 0 0 3112400 4816400 0 0 0 0 0 0 0 0 0 11712 671 11406 220448;220449;220450;220451;220452;220453 135286;135287 135286 0 LANSALR Unmodified 743.42899 0.42898711 1011 P0AGE4 sstT Serine/threonine transporter SstT yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 15.567 16.421 2 0.088355 5226 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 56.026 5.1281 184660000 6377500 0 0 0 9320900 7809200 41247000 38997000 19650000 0 0 0 24417000 10167000 10860000 0 0 0 15811000 0 0 0 0 0 11713 1011 11407 220454;220455;220456;220457;220458;220459;220460;220461;220462;220463 135288;135289;135290;135291 135291 4 LANVGVEQIFGGDR Unmodified 1473.7576 0.75759147 1430 P33644 yfiH Laccase domain protein YfiH yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.83 40.131 2 5.9964E-08 19881 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 174.4 149.61 329040000 27390000 27455000 28273000 0 0 0 31320000 33381000 27301000 0 0 0 19990000 21520000 24943000 0 0 0 27863000 32470000 27132000 0 0 0 11714 1430 11408 220464;220465;220466;220467;220468;220469;220470;220471;220472;220473;220474;220475 135292;135293;135294;135295 135293 4 LANVNPPELLR Unmodified 1234.7034 0.70337105 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 35.111 33.279 2 9.1363E-05 16153 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.5 116.56 192010000 20459000 17274000 16727000 0 0 0 41335000 42413000 44627000 2145100 2461800 2587800 0 0 1979700 0 0 0 0 0 0 0 0 0 11715 1413 11409 220476;220477;220478;220479;220480;220481;220482;220483;220484;220485 135296;135297;135298;135299;135300 135297 4 LAPALAAGNCVVLKPSEITPLTALK Unmodified 2546.4506 0.45058076 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 48.045 46.636 2;3 8.8469E-60 22874 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 250.41 249.75 1613900000 480590000 466870000 442200000 0 0 0 43419000 37995000 43349000 0 2090900 0 14838000 9759200 13043000 0 0 0 17975000 20274000 21471000 0 0 0 11716 1925 11410 220486;220487;220488;220489;220490;220491;220492;220493;220494;220495;220496;220497;220498;220499;220500;220501 135301;135302;135303;135304;135305;135306;135307;135308 135304 8 LAPALPANDGK Unmodified 1065.5819 0.58185893 1824 P76148 yneG Uncharacterized protein YneG yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 19.129 19.504 2 0.0013155 5772 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 80.688 76.942 16340000 0 0 0 0 0 0 0 0 0 0 0 0 1933100 0 0 2621700 1487200 1585200 2864400 3182400 2666300 0 0 0 11717 1824 11411 220502;220503;220504;220505;220506;220507;220508 135309 135309 1 LAPDGMLLDIKPEGGDPALCQAALAAAK Unmodified 2805.4405 0.44048636 1163 P19934 tolA Protein TolA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 49.499 48.176 3 1.0832E-05 23280 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 78.098 76.041 67817000 5845400 0 4765500 0 0 0 0 0 0 0 3132100 1838000 0 7514500 6845600 0 0 0 11344000 12553000 8623000 2197100 0 3158600 11718 1163 11412 220509;220510;220511;220512;220513;220514;220515;220516;220517;220518;220519 135310 135310 1 LAPENTLASIDVGAK Unmodified 1497.8039 0.80387296 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 2 2 1 2 1 2 1 1 2 2 1 1 1 1 35.203 33.782 2;3 1.4304E-08 15424 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 164.04 136.27 2755100000 62038000 55830000 45628000 1276000 1265700 1794300 9907000 192670000 6296300 0 0 0 270220000 263060000 250860000 1487700 794140 0 532670000 557640000 494740000 1727000 2749200 2391600 11719 1065 11413 220520;220521;220522;220523;220524;220525;220526;220527;220528;220529;220530;220531;220532;220533;220534;220535;220536;220537;220538;220539;220540;220541;220542;220543;220544;220545;220546 135311;135312;135313;135314;135315;135316;135317;135318;135319;135320;135321 135321 11 LAPGSPFTGER Unmodified 1130.572 0.57202253 941 P0AFH2 oppB Oligopeptide transport system permease protein OppB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.691 22.937 2 0.090137 9878 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 42.395 42.395 251240000 53217000 54679000 54448000 0 0 3866700 10942000 9730800 11343000 0 0 0 7506300 6640800 4361400 0 0 0 10879000 10651000 12977000 0 0 0 11720 941 11414 220547;220548;220549;220550;220551;220552;220553;220554;220555;220556;220557;220558;220559 135322;135323;135324 135324 0 LAPLDLIR Unmodified 909.56475 0.56475231 1672 P64463 ydfZ Putative selenoprotein YdfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.115 41.6 2 0.00025974 20685 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 149.4 133.25 2573800000 112210000 124030000 105620000 0 0 0 464130000 445950000 456390000 0 0 0 202670000 218100000 194420000 0 0 0 85687000 77916000 86674000 0 0 0 11721 1672 11415 220560;220561;220562;220563;220564;220565;220566;220567;220568;220569;220570;220571 135325;135326;135327;135328;135329;135330;135331;135332;135333;135334;135335;135336;135337;135338;135339 135325 15 LAPLFGLK Unmodified 857.53747 0.53747492 1285 P26647 plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.435 38.575 2 0.0055045 18738 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 86.512 54.933 225490000 7041000 5010100 4684900 1978800 2818900 2455500 19142000 16451000 25924000 8673900 5346700 7779600 14574000 13054000 13445000 0 0 0 19680000 20640000 19699000 5774000 6281700 5040500 11722 1285 11416 220572;220573;220574;220575;220576;220577;220578;220579;220580;220581;220582;220583;220584;220585;220586;220587;220588;220589;220590;220591;220592 135340;135341;135342;135343;135344;135345;135346;135347;135348;135349;135350;135351;135352;135353;135354;135355;135356;135357;135358 135349 19 LAPNAEIGK Unmodified 911.50763 0.50763136 689 P0AC00 frlB Fructoselysine 6-phosphate deglycase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.555 15.32 2 0.004522 4762 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 77.732 38.434 73890000 5681600 3174600 3334400 0 0 0 7101700 9137300 8794600 0 0 0 10432000 7449900 6678100 0 0 0 4457900 4600500 3046900 0 0 0 11723 689 11417 220593;220594;220595;220596;220597;220598;220599;220600;220601;220602;220603;220604 135359;135360;135361;135362;135363;135364;135365 135364 7 LAPQELEQK Unmodified 1054.5659 0.56587452 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.834 17.53 2 5.2467E-05 6199 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.38 143.7 135570000 22442000 20261000 15725000 0 0 0 11331000 9485200 8858100 0 0 0 4733200 5358000 4885600 0 490790 0 12520000 10337000 9141900 0 0 0 11724 1664 11418 220605;220606;220607;220608;220609;220610;220611;220612;220613;220614;220615;220616;220617 135366;135367;135368;135369;135370;135371;135372;135373 135371 7 LAPSLTLGCGSWGGNSISENVGPK Unmodified 2400.1744 0.17435891 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 2 44.857 43.272 2;3 3.8084E-40 17606 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 264.03 257.59 3882200000 136990000 109880000 171760000 127710000 125980000 125880000 434290000 417730000 400890000 129120000 125160000 121390000 200060000 158420000 168210000 2350500 6342400 10314000 174330000 174220000 173140000 155220000 102300000 130570000 11725 548 11419 220618;220619;220620;220621;220622;220623;220624;220625;220626;220627;220628;220629;220630;220631;220632;220633;220634;220635;220636;220637;220638;220639;220640;220641;220642;220643;220644;220645;220646;220647;220648;220649;220650;220651;220652;220653;220654;220655;220656;220657;220658 135374;135375;135376;135377;135378;135379;135380;135381;135382;135383;135384;135385;135386;135387;135388;135389;135390;135391;135392;135393;135394;135395;135396;135397;135398;135399;135400;135401;135402;135403 135376 30 LAPVMAK Unmodified 728.42548 0.42548163 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.291 15.638 2 0.01319 4323 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 84.025 39.079 330960000 0 0 0 0 0 0 99340000 0 0 8471800 5100900 7312300 67276000 76639000 0 5220900 3477700 2340800 0 29562000 16940000 2667700 2866700 3744400 11726 506 11420 220659;220660;220661;220662;220663;220664;220665;220666;220667;220668;220669;220670;220671;220672 135404;135405;135406;135407;135408;135409 135406 6 LAQALANPLFPALDSALR Unmodified 1880.052 0.051982576 1198 P22524 mukE Chromosome partition protein MukE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.647 53.192 2 1.7104E-17 25070 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 174.21 173.66 436580000 47184000 33832000 30958000 0 0 0 29053000 32414000 24170000 3181600 4403800 0 34624000 27305000 34309000 0 0 0 40393000 41922000 48842000 2480400 0 1505000 11727 1198 11421 220673;220674;220675;220676;220677;220678;220679;220680;220681;220682;220683;220684;220685;220686;220687;220688 135410;135411;135412;135413;135414;135415 135415 4 LAQAQKPR Unmodified 910.53485 0.53484916 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.499 6.3648 2 0.00018967 1078 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 159.19 127.89 948020000 134820000 135870000 107840000 0 0 0 56665000 59583000 55901000 0 0 0 66934000 56712000 55440000 0 0 0 77285000 68911000 72065000 0 0 0 11728 1639 11422 220689;220690;220691;220692;220693;220694;220695;220696;220697;220698;220699;220700 135416;135417;135418;135419;135420;135421;135422;135423;135424;135425;135426;135427 135426 12 LAQEASQEAAR Unmodified 1172.5786 0.57856447 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.276 11.94 2 4.2919E-11 3020 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 200.86 188.9 2684000000 197450000 184640000 198410000 5579700 5764400 9311400 219840000 224250000 213220000 6657600 6558200 6010300 249890000 207700000 209640000 0 0 2335100 242970000 250780000 226100000 7050500 5161200 4636200 11729 561 11423 220701;220702;220703;220704;220705;220706;220707;220708;220709;220710;220711;220712;220713;220714;220715;220716;220717;220718;220719;220720;220721;220722;220723 135428;135429;135430;135431;135432;135433;135434;135435;135436;135437;135438;135439;135440;135441;135442;135443;135444;135445 135441 18 LAQEEVWIR Unmodified 1142.6084 0.60840804 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.885 29.447 2 0.00025096 13840 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 122.13 118.29 299940000 21046000 19942000 19276000 0 515960 0 27412000 24498000 21916000 0 0 0 22619000 25202000 18595000 0 0 0 32607000 32611000 32252000 773330 674400 0 11730 1564 11424 220724;220725;220726;220727;220728;220729;220730;220731;220732;220733;220734;220735;220736;220737;220738 135446;135447;135448;135449;135450;135451;135452;135453;135454;135455;135456 135449 10 LAQENPTR Unmodified 927.47739 0.47739386 1239 P24192 hypD Hydrogenase isoenzymes formation protein HypD yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 10.755 11.63 2 0.0034819 2768 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.59 97.683 47904000 0 0 1842900 0 0 0 0 0 11104000 0 0 0 8095200 6244400 7824700 0 0 0 7725700 5067400 0 0 0 0 11731 1239 11425 220739;220740;220741;220742;220743;220744;220745 135457;135458;135459 135457 0 LAQFTSLQADLENGVNLEQTIR Unmodified 2459.2656 0.26561676 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 53.091 51.669 2;3 2.0315E-88 24216 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 398.79 383.63 6197100000 225300000 212640000 186700000 7883100 6029200 8381600 751930000 742870000 781120000 15623000 10608000 12155000 677610000 647930000 579690000 0 0 0 408000000 438490000 466920000 6168900 4254200 6851600 11732 212 11426 220746;220747;220748;220749;220750;220751;220752;220753;220754;220755;220756;220757;220758;220759;220760;220761;220762;220763;220764;220765;220766;220767;220768;220769;220770;220771;220772;220773;220774;220775;220776;220777;220778;220779;220780;220781;220782;220783 135460;135461;135462;135463;135464;135465;135466;135467;135468;135469;135470;135471;135472;135473;135474;135475;135476;135477;135478;135479;135480;135481;135482;135483;135484;135485 135485 26 LAQGPIALYCGFDPTADSLHLGHLVPLLCLK Unmodified 3388.7676 0.76757458 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.617 53.169 4 1.9414E-13 25150 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 132.12 131.94 2589400000 289770000 267830000 220690000 0 0 0 192780000 165680000 175140000 0 0 0 192220000 191420000 189870000 0 0 0 253800000 234640000 215550000 0 0 0 11733 1024 11427 220784;220785;220786;220787;220788;220789;220790;220791;220792;220793;220794;220795 135486;135487;135488;135489;135490;135491;135492;135493;135494;135495;135496;135497 135496 12 LAQITQYAR Unmodified 1062.5822 0.58219329 1809 P76035 yciW Uncharacterized protein YciW yes yes 0 0 0 By MS/MS By MS/MS 1 1 20.945 21.42 2 0.011016 8563 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 73.26 64.488 25627000 12841000 12786000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11734 1809 11428 220796;220797 135498;135499 135498 0 LAQKEEESK Unmodified 1060.5401 0.5400537 605 P0AAN9 iraP Anti-adapter protein IraP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 6.3377 7.0775 2;3 2.265E-05 993 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 162.49 139.71 490100000 94710000 50215000 48712000 335280 593310 334000 75096000 68582000 70972000 3111200 1395900 1642900 18189000 19130000 16513000 0 0 0 0 17811000 0 1087800 1061100 602550 11735 605 11429 220798;220799;220800;220801;220802;220803;220804;220805;220806;220807;220808;220809;220810;220811;220812;220813;220814;220815;220816;220817;220818;220819;220820;220821;220822;220823 135500;135501;135502;135503;135504;135505;135506;135507;135508;135509;135510;135511;135512 135501 9 LAQKEEESKELCAQVEALEIIVTAMLR Unmodified 3100.6148 0.61482191 605 P0AAN9 iraP Anti-adapter protein IraP yes yes 0 0 2 By matching By MS/MS By MS/MS 1 1 1 55.53 55.585 4 5.1422E-11 20890 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 125 119.22 44325000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8953100 13380000 21992000 0 0 0 0 0 0 11736 605 11430 220824;220825;220826 135513;135514 135513 2 LAQLADEAK Unmodified 957.51311 0.51311067 957 P0AFM9 pspB Phage shock protein B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 1 2 1 2 2 2 2 2 16.198 16.95 2 0.007892 5420 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 66.546 49.999 802800000 34637000 41893000 26108000 575300 550880 658990 169420000 10635000 154510000 0 0 0 1690100 6044200 87279000 0 0 0 89575000 95312000 83916000 0 0 0 11737 957 11431 220827;220828;220829;220830;220831;220832;220833;220834;220835;220836;220837;220838;220839;220840;220841;220842;220843;220844;220845;220846;220847;220848;220849;220850;220851 135515;135516;135517 135515 2 LAQLEFR Unmodified 875.4865 0.48650199 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.924 25.849 2 0.0010277 11228 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 138.48 104.96 2235600000 181860000 179990000 180320000 0 0 1292500 163650000 164040000 166810000 1269300 0 1339200 190240000 176180000 179900000 1424800 605610 762180 224820000 221810000 198220000 0 0 1085600 11738 149 11432 220852;220853;220854;220855;220856;220857;220858;220859;220860;220861;220862;220863;220864;220865;220866;220867;220868;220869;220870 135518;135519;135520;135521;135522;135523;135524;135525;135526;135527 135525 8 LAQLQVAIQNVTQEQTQR Unmodified 2067.1073 0.10726562 1090 P13458 sbcC Nuclease SbcCD subunit C yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 40.44 38.209 3 8.2707E-05 15139 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 72.184 70.674 12000000 0 0 0 1128400 0 1034200 0 0 0 2741300 3770200 3325900 0 0 0 0 0 0 0 0 0 0 0 0 11739 1090 11433 220871;220872;220873;220874;220875 135528 135528 1 LAQLTAK Unmodified 743.45414 0.45413923 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 13.029 13.733 2 0.006056 4160 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.068 27.635 361400000 114150000 0 0 0 0 0 114030000 133210000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11740 1073 11434 220876;220877;220878 135529;135530 135529 2 LAQMEINPGGTLELGVDYGR Unmodified 2132.0572 0.057203888 77 P02943 lamB Maltoporin yes yes 0 0 0 By MS/MS 1 48.624 47.47 2 1.4516E-18 22921 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 186.68 172.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11741 77 11435 220879 135531 135531 1 LAQMQQLSHQDDDSAAAAALAAQTGER Unmodified 2796.3097 0.30968319 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1 1 2 1 1 2 1 1 2 2 1 2 2 1 2 2 2 1 1 1 33.392 31.98 2;3 9.4708E-67 12345 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 307.82 297.76 1486700000 88468000 82938000 59316000 14268000 11908000 9034200 101590000 102910000 92259000 11475000 5639300 5075600 88124000 79223000 90165000 96298000 55211000 55844000 140180000 133780000 150620000 4180800 3629900 4574100 11742 1057 11436 220880;220881;220882;220883;220884;220885;220886;220887;220888;220889;220890;220891;220892;220893;220894;220895;220896;220897;220898;220899;220900;220901;220902;220903;220904;220905;220906;220907;220908;220909;220910;220911;220912;220913;220914 135532;135533;135534;135535;135536;135537;135538;135539;135540;135541;135542;135543;135544;135545;135546;135547;135548;135549;135550;135551;135552;135553 135536 22 LAQQEGQTGLPHPK Unmodified 1502.7841 0.78414057 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 2 2 2 2 2 2 13.464 14.151 2;3 7.941E-07 3717 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 160.98 154.74 896830000 47542000 49097000 41145000 21293000 18191000 19100000 8174200 10720000 7687600 8650100 45419000 46111000 39485000 48160000 31551000 4197600 0 774700 119650000 108180000 92918000 93803000 19306000 15672000 11743 215 11437 220915;220916;220917;220918;220919;220920;220921;220922;220923;220924;220925;220926;220927;220928;220929;220930;220931;220932;220933;220934;220935;220936;220937;220938;220939;220940;220941;220942;220943;220944;220945;220946;220947;220948;220949;220950;220951;220952;220953;220954;220955;220956 135554;135555;135556;135557;135558;135559;135560;135561;135562;135563;135564;135565;135566;135567;135568;135569 135556 15 LAQQNLSEITGEFTSDDLLGR Unmodified 2306.139 0.13901926 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 51.938 50.736 2;3 3.6901E-16 23970 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 200.55 193.35 159940000 19412000 18385000 16625000 0 0 0 0 3468100 5965600 0 0 0 24620000 22530000 23926000 0 0 0 0 12537000 12476000 0 0 0 11744 1256 11438 220957;220958;220959;220960;220961;220962;220963;220964;220965;220966;220967;220968;220969;220970;220971;220972 135570;135571;135572;135573;135574;135575 135575 4 LAQQQAMYESQQER Unmodified 1708.7839 0.78388257 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 15.886 16.666 2;3 1.5259E-19 5785 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 209.97 206.2 55797000 0 0 0 0 0 0 0 0 2896200 908850 0 0 7162400 6867000 5575000 0 0 0 12616000 9509300 10263000 0 0 0 11745 1664 11439 220973;220974;220975;220976;220977;220978;220979;220980;220981 135576;135577;135578;135579 135576 4 LAQSAPPYGNTIAR Unmodified 1457.7627 0.76267685 1367 P31441 ade Adenine deaminase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.882 21.929 2 0.00012422 8656 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.014 75.783 80696000 6269500 4136200 3449700 0 0 0 8598000 6992300 8065900 0 0 0 6306900 6068100 5306500 0 0 0 7205600 9109000 9188100 0 0 0 11746 1367 11440 220982;220983;220984;220985;220986;220987;220988;220989;220990;220991;220992;220993 135580;135581;135582 135580 3 LAQTIADMALR Unmodified 1201.6489 0.64889264 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.422 33.817 2 3.7204E-08 16159 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 177.7 150.45 1958100000 171570000 151640000 142780000 48554000 40540000 41180000 121740000 117510000 97620000 10184000 10264000 9981800 133630000 124410000 123700000 7426400 4114600 0 4198300 180950000 170250000 83362000 76492000 86031000 11747 1628 11441 220994;220995;220996;220997;220998;220999;221000;221001;221002;221003;221004;221005;221006;221007;221008;221009;221010;221011;221012;221013;221014;221015;221016;221017 135583;135584;135585;135586;135587;135588;135589;135590;135591;135592;135593;135594;135595;135596;135597;135598 135589 16 LAQYIQQVDDK Unmodified 1319.6721 0.67213051 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 0 By MS/MS 1 23.326 22.23 2 0.00029136 7656 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 90.108 87.344 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11748 1854 11442 221018 135599 135599 1 LAQYIQQVDDKVNQELEK Unmodified 2160.1063 0.10626257 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.258 35.642 3 2.2344E-22 16495 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 180.81 172.62 475890000 13971000 13338000 13169000 10850000 14360000 12977000 18360000 24330000 19905000 32689000 30925000 27641000 15810000 18153000 16881000 8769800 8456100 8837600 33010000 36537000 34219000 21330000 20002000 21368000 11749 1854 11443 221019;221020;221021;221022;221023;221024;221025;221026;221027;221028;221029;221030;221031;221032;221033;221034;221035;221036;221037;221038;221039;221040;221041;221042 135600;135601;135602;135603;135604;135605;135606;135607;135608;135609;135610;135611;135612;135613;135614;135615;135616;135617;135618 135618 19 LARPGSDVALDDQLYQEPQAAPVAVPMGK Unmodified 3035.5386 0.5386205 436 P0A8J2 dnaT Primosomal protein 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.848 39.183 3 2.759E-07 18960 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.181 83.278 92679000 9587700 11079000 9497900 0 0 0 7554400 9663600 9009300 0 0 0 5424100 4211800 3877900 0 0 0 6233400 8923800 7615900 0 0 0 11750 436 11444 221043;221044;221045;221046;221047;221048;221049;221050;221051;221052;221053;221054 135619 135619 1 LASAHYYDELPTEGNEHGQAFR Unmodified 2504.1357 0.13566522 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 2 2 2 2 1 1 25.969 24.785 3;4 3.6478E-15 11411 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 140.32 140.32 1018900000 10287000 5403300 6517400 0 0 0 174480000 188680000 163300000 3491000 0 2704600 119390000 134630000 136190000 0 0 0 30936000 23859000 19023000 0 0 0 11751 1097 11445 221055;221056;221057;221058;221059;221060;221061;221062;221063;221064;221065;221066;221067;221068;221069;221070;221071;221072;221073;221074;221075 135620;135621;135622;135623;135624;135625;135626;135627;135628;135629;135630;135631;135632;135633;135634 135624 15 LASALCAAEDTPK Unmodified 1345.6548 0.65476588 1362 P31131 ydeJ Protein YdeJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 23.034 22.356 2 9.8016E-18 9575 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 218.52 207.76 112400000 26188000 22421000 24186000 0 0 0 9197100 7855100 9181900 0 0 0 2541700 2459800 2117400 0 0 0 3387900 0 2858600 0 0 0 11752 1362 11446 221076;221077;221078;221079;221080;221081;221082;221083;221084;221085;221086 135635;135636;135637;135638 135636 3 LASAVDTR Unmodified 831.44503 0.4450311 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.999 12.518 2 0.0023384 3547 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.33 62.509 367590000 58141000 28643000 65567000 0 0 0 0 0 88993000 1509400 1418100 1482300 46769000 5066900 13261000 2603600 3091000 3561600 0 47479000 0 0 0 0 11753 44 11447 221087;221088;221089;221090;221091;221092;221093;221094;221095;221096;221097;221098;221099;221100 135639;135640;135641 135639 3 LASAVGSLR Unmodified 872.50797 0.50796571 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.884 18.336 2 9.6568E-06 4920 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 167.24 137.87 122360000 0 0 0 16070000 16707000 15409000 5439500 5728100 7133200 4082400 0 3481600 4330900 0 2533200 0 0 1315500 7504900 4811800 7087900 7604500 5910700 7211500 11754 1899 11448 221101;221102;221103;221104;221105;221106;221107;221108;221109;221110;221111;221112;221113;221114;221115;221116;221117 135642;135643;135644;135645;135646;135647;135648;135649 135649 8 LASEPSGQEFLVFTLGDEEYGIDILK Unmodified 2869.4273 0.42732194 493 P0A964 cheW Chemotaxis protein CheW yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 55.595 54.229 3 0.070584 19983 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 33.156 30.408 45301000 13876000 8182800 10203000 3631800 5729600 2635400 0 0 0 0 0 0 0 0 1042400 0 0 0 0 0 0 0 0 0 11755 493 11449 221118;221119;221120;221121;221122;221123;221124 135650 135650 1 LASGLGLR Unmodified 785.47594 0.4759373 1601 P52062 yggW Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.855 21.203 2 0.0013452 8737 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 109.63 38.914 114830000 8517900 7723500 8063000 0 0 0 12371000 13557000 9202400 0 0 0 7860000 6736200 6505000 0 0 0 11675000 10691000 11931000 0 0 0 11756 1601 11450 221125;221126;221127;221128;221129;221130;221131;221132;221133;221134;221135;221136 135651;135652;135653;135654;135655 135652 1 LASGLYTWLPTGVR Unmodified 1532.8351 0.83511351 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 50.108 48.702 2;3 9.4971E-11 24055 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 199.03 179.04 1518000000 140810000 112540000 116010000 436970 0 0 126140000 116750000 110640000 0 0 0 119080000 113010000 111330000 0 0 0 147090000 158450000 145720000 0 0 0 11757 1120 11451 221137;221138;221139;221140;221141;221142;221143;221144;221145;221146;221147;221148;221149;221150;221151;221152;221153;221154;221155;221156;221157;221158;221159;221160;221161 135656;135657;135658;135659;135660;135661;135662;135663;135664;135665;135666;135667;135668;135669;135670 135658 15 LASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDR Unmodified 4366.9953 0.99529569 1936 P77739 yniA Uncharacterized protein YniA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.644 52.181 4 2.945E-29 25665 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 159.8 158.54 241750000 48872000 43321000 39383000 0 0 0 27163000 31567000 27653000 0 0 0 9516300 0 8901000 0 0 0 5376600 0 0 0 0 0 11758 1936 11452 221162;221163;221164;221165;221166;221167;221168;221169;221170 135671;135672 135672 2 LASILAK Unmodified 714.46398 0.46397563 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 20.02 20.263 1;2 0.00080871 6120 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 144.29 58.988 3300500000 188740000 168950000 143180000 11626000 10550000 11710000 307530000 220180000 239690000 37808000 36571000 41164000 263640000 228190000 201450000 13853000 11480000 14111000 343250000 301070000 320360000 68890000 55455000 61058000 11759 547 11453 221171;221172;221173;221174;221175;221176;221177;221178;221179;221180;221181;221182;221183;221184;221185;221186;221187;221188;221189;221190;221191;221192;221193;221194;221195;221196;221197;221198;221199;221200;221201;221202;221203;221204;221205;221206;221207;221208;221209;221210;221211;221212;221213;221214;221215;221216;221217;221218 135673;135674;135675;135676;135677;135678;135679;135680;135681;135682;135683;135684;135685;135686;135687;135688;135689;135690;135691;135692;135693;135694;135695;135696;135697;135698;135699 135673 23 LASLPGVVPGK Unmodified 1036.6281 0.62808085 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.109 28.713 2 0.0007358 13444 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 85.731 61.88 157050000 41124000 35873000 31821000 3413300 2762200 3607500 5417500 5065600 3742400 0 0 0 2601700 2484600 2436500 0 0 0 6522900 5183800 4993800 0 0 0 11760 592 11454 221219;221220;221221;221222;221223;221224;221225;221226;221227;221228;221229;221230;221231;221232;221233 135700;135701;135702;135703;135704;135705;135706;135707 135704 3 LASLSSALLNSALQK Unmodified 1514.8668 0.86680757 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 44.893 43.447 2;3 7.2353E-27 17167 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 278.51 263.14 1758300000 74024000 67586000 67971000 40472000 41181000 41154000 61903000 53085000 60259000 59488000 71654000 56652000 55661000 15260000 15956000 32887000 22378000 28868000 170480000 183620000 160700000 132410000 125540000 119140000 11761 215 11455 221234;221235;221236;221237;221238;221239;221240;221241;221242;221243;221244;221245;221246;221247;221248;221249;221250;221251;221252;221253;221254;221255;221256;221257;221258;221259;221260;221261;221262;221263;221264;221265;221266;221267;221268;221269;221270;221271;221272;221273;221274;221275;221276;221277;221278;221279 135708;135709;135710;135711;135712;135713;135714;135715;135716;135717;135718;135719;135720;135721;135722;135723;135724;135725;135726;135727;135728;135729;135730;135731;135732;135733;135734;135735;135736;135737;135738;135739;135740;135741;135742;135743;135744;135745;135746 135724 39 LASNATVYR Unmodified 993.52434 0.52434406 2004 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 1 1 1 15.022 15.862 2 0.14954 5350 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 38.133 34.449 12336000000 244860000 264830000 237170000 445470 420420 354200 14018000 5292600000 0 0 0 0 1037400000 981390000 1242400000 0 0 0 1070300000 934480000 1015400000 0 0 0 + 11762 2004 11456 221280;221281;221282;221283;221284;221285;221286;221287;221288;221289;221290;221291;221292;221293;221294 135747 135747 1 LASQGSGK Unmodified 746.39227 0.39226725 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 7.0359 7.5301 2 0.0023006 1320 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.64 77.287 107970000 35348000 40933000 31532000 0 0 0 0 0 0 58342 48741 53289 0 0 0 0 0 0 0 0 0 0 0 0 11763 1172 11457 221295;221296;221297;221298;221299;221300 135748;135749;135750 135749 3 LASQIGAGLVGVMYVLDEPSIGLHQR Unmodified 2722.4476 0.44762065 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 54.243 54.299 3;4 1.317E-50 20405 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 232.87 230.39 331030000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88978000 128210000 113840000 0 0 0 0 0 0 11764 222 11458 221301;221302;221303;221304;221305;221306 135751;135752;135753;135754;135755;135756 135755 6 LASQLSGWELNVMTVDDLQAK Unmodified 2317.1624 0.16239724 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 1 2 2 3 2 2 4 2 6 6 7 1 1 2 4 4 6 53.787 52.769 2;3 9.2347E-75 25537 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 304.28 299.39 5496800000 85203000 81180000 68906000 0 0 0 26282000 13946000 23868000 241940000 276430000 269950000 28823000 41872000 27560000 855140000 717580000 832060000 21990000 22850000 30431000 673130000 560680000 597020000 11765 935 11459 221307;221308;221309;221310;221311;221312;221313;221314;221315;221316;221317;221318;221319;221320;221321;221322;221323;221324;221325;221326;221327;221328;221329;221330;221331;221332;221333;221334;221335;221336;221337;221338;221339;221340;221341;221342;221343;221344;221345;221346;221347;221348;221349;221350;221351;221352;221353;221354;221355;221356;221357;221358;221359;221360;221361;221362;221363;221364;221365;221366;221367;221368;221369;221370;221371;221372;221373 135757;135758;135759;135760;135761;135762;135763;135764;135765;135766;135767;135768;135769;135770;135771;135772;135773;135774;135775;135776;135777;135778;135779;135780;135781;135782;135783;135784;135785;135786;135787;135788;135789;135790;135791;135792;135793;135794;135795;135796;135797;135798;135799;135800;135801;135802;135803 135793 43 LASQLSGWELNVMTVDDLQAK Oxidation (M) 2333.1573 0.15731186 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 51.072 49.823 2;3 4.1859E-15 19801 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 149.3 144.67 27052000 0 0 0 0 0 0 0 0 0 3067200 1923500 3619800 0 0 0 1778900 0 0 0 0 0 11676000 0 4986500 11766 935 11459 221374;221375;221376;221377;221378;221379;221380 135804;135805;135806 135805 421 3 LASSLSLAECELLAR Unmodified 1631.8553 0.8552566 112 P05523 mutM Formamidopyrimidine-DNA glycosylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 45.58 44.369 2 4.6776E-12 15815 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 176.78 164.91 59396000 0 0 2869400 0 0 0 7279700 6759100 4925200 0 0 0 0 4820000 0 0 6289200 8037600 6984600 6344000 5087200 0 0 0 11767 112 11460 221381;221382;221383;221384;221385;221386;221387;221388;221389;221390 135807;135808;135809 135807 1 LASTEWVDIVNEENEVIAQASR Unmodified 2472.2132 0.21324684 1705 P65556 yfcD Uncharacterized Nudix hydrolase YfcD yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.512 53.064 2 4.7426E-43 25935 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 230.97 218.14 247460000 27879000 27396000 29833000 0 0 0 16800000 13231000 11023000 0 0 0 21343000 19495000 18422000 0 0 0 22345000 21975000 17722000 0 0 0 11768 1705 11461 221391;221392;221393;221394;221395;221396;221397;221398;221399;221400;221401;221402 135810;135811 135810 1 LASTWEGIR Unmodified 1031.54 0.53999412 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 27.135 25.808 2 0.00011307 11628 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.15 101.68 1089800000 336440000 291990000 252460000 650250 0 0 0 0 0 1075300 1032300 1084400 59209000 60655000 0 0 0 0 0 85161000 0 0 0 0 11769 401 11462 221403;221404;221405;221406;221407;221408;221409;221410;221411;221412 135812;135813;135814 135812 3 LASTWQGIR Unmodified 1030.556 0.55597854 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.983 23.994 2 7.9438E-08 10118 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 187.63 151.45 12137000000 980440000 1022300000 915130000 0 0 0 1335600000 1253900000 1190900000 0 0 0 886690000 648030000 678570000 0 0 0 1087500000 1035200000 1102500000 0 0 0 11770 402 11463 221413;221414;221415;221416;221417;221418;221419;221420;221421;221422;221423;221424 135815;135816;135817;135818;135819;135820;135821;135822;135823 135822 9 LASVDQFR Unmodified 934.48723 0.48723027 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.557 21.578 2 1.518E-06 9041 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 192.28 157.56 2838800000 349860000 0 269270000 0 3821900 4329000 185270000 172580000 166050000 0 0 0 236260000 231130000 244370000 1583700 1478600 1700100 291960000 336330000 335060000 4107100 3604100 0 11771 561 11464 221425;221426;221427;221428;221429;221430;221431;221432;221433;221434;221435;221436;221437;221438;221439;221440;221441;221442 135824;135825;135826;135827;135828;135829;135830;135831;135832;135833;135834;135835 135825 11 LASVLTPR Unmodified 855.5178 0.51780212 739 P0ACP5 gntR HTH-type transcriptional regulator GntR yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 1 1 2 2 1 2 2 1 1 1 1 1 1 2 1 1 2 21.466 21.49 2 0.01232 6365 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 75.311 52.291 312720000 10860000 19045000 9914100 17747000 21720000 22848000 9935800 4123700 6066600 24167000 23649000 1879200 9188100 8305100 4319100 10208000 6058300 5727100 6854000 4598500 10171000 21888000 24535000 28915000 11772 739 11465 221443;221444;221445;221446;221447;221448;221449;221450;221451;221452;221453;221454;221455;221456;221457;221458;221459;221460;221461;221462;221463;221464;221465;221466;221467;221468;221469;221470;221471;221472;221473;221474;221475;221476;221477 135836;135837;135838;135839;135840;135841;135842;135843;135844;135845;135846;135847;135848;135849;135850 135846 12 LASVNLSR Unmodified 858.49232 0.49231565 676 P0ABS8 holE DNA polymerase III subunit theta yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.705 18.285 2 0.0037231 6751 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.752 27.094 168620000 13110000 13385000 12440000 1347800 1409500 1096800 15697000 14061000 9661900 3722100 0 0 0 11178000 0 0 0 0 24096000 23559000 21353000 0 2500200 0 11773 676 11466 221478;221479;221480;221481;221482;221483;221484;221485;221486;221487;221488;221489;221490;221491;221492 135851 135851 1 LASYLDK Unmodified 808.43307 0.43306943 16;13;6;12 CON__P13645;CON__Q99456;CON__P35527;CON__P02533;CON__Q04695;CON__Q9QWL7;CON__P08779 no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.238 17.459 2 0.0023005 5117 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 114.72 59.934 777440000 0 0 0 9735800 6772400 7045200 0 0 0 183070000 138160000 121940000 0 0 0 28983000 31457000 31920000 0 0 0 82512000 75607000 60242000 + 11774 13;16;6;12 11467 221493;221494;221495;221496;221497;221498;221499;221500;221501;221502;221503;221504 135852;135853;135854;135855;135856;135857;135858;135859;135860 135856 9 LASYLDKVQALEEANNDLENK Unmodified 2376.1809 0.18088408 16 CON__P35527 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 1 1 40.902 39.062 2;3 1.032E-62 15467 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 357.71 346.24 439880000 0 0 0 7718200 7068800 6301300 0 0 0 91191000 81974000 129300000 0 3913500 3099200 5239200 0 4544700 0 0 0 35659000 35018000 28847000 + 11775 16 11468 221505;221506;221507;221508;221509;221510;221511;221512;221513;221514;221515;221516;221517;221518;221519;221520;221521 135861;135862;135863;135864;135865;135866;135867;135868;135869;135870;135871;135872;135873;135874 135868 14 LASYLDKVR Unmodified 1063.6026 0.60259438 13;6;12 CON__P13645;CON__Q99456;CON__P02533;CON__Q04695;CON__Q9QWL7;CON__P08779 no no 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 21.813 21.506 2;3 1.2375E-05 5532 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 170.66 156.51 420490000 40939000 31202000 28449000 18616000 19681000 22362000 4209400 5552100 3448300 18358000 16207000 14023000 4101600 5574600 4711600 35227000 27860000 32188000 9639600 10555000 10554000 23948000 15332000 17750000 + 11776 13;6;12 11469 221522;221523;221524;221525;221526;221527;221528;221529;221530;221531;221532;221533;221534;221535;221536;221537;221538;221539;221540;221541;221542;221543;221544;221545;221546;221547;221548;221549;221550;221551;221552;221553;221554;221555;221556;221557 135875;135876;135877;135878;135879;135880;135881;135882;135883;135884;135885;135886;135887;135888;135889 135876 15 LASYLEK Unmodified 822.44872 0.4487195 4;18 CON__ENSEMBL:ENSP00000377550;CON__P13646-1;CON__P35900;CON__Q6IFU5;CON__Q14525;CON__Q9UE12;CON__Q15323;CON__Q497I4;CON__Q6NTB9;CON__O76009 no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 2 1 1 1 1 1 19.317 19.276 2 0.014893 6607 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 82.305 47.413 33848000 0 0 0 0 2044900 0 0 0 0 12997000 8969700 5929600 0 0 0 458050 370510 0 0 0 1612200 0 1465900 0 + 11777 4;18 11470 221558;221559;221560;221561;221562;221563;221564;221565;221566;221567 135890;135891;135892;135893;135894 135891 5 LATAAAN Unmodified 630.33369 0.33368974 1404 P33015 yeeE UPF0394 inner membrane protein YeeE yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.785 12.482 1 0.13071 3249 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 77.496 77.496 163420000 0 0 0 0 0 0 13242000 14449000 12251000 1432800 447430 368020 15549000 17473000 19370000 0 0 0 24358000 21162000 23317000 0 0 0 11778 1404 11471 221568;221569;221570;221571;221572;221573;221574;221575;221576;221577;221578;221579 135895;135896 135896 0 LATAVAHLIGR Unmodified 1120.6717 0.671677 1879 P76621 csiD Protein CsiD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 1 26.105 24.912 2;3 3.9634E-10 11089 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 205.36 152.19 416850000 96283000 92476000 86909000 0 0 0 39557000 44070000 41790000 0 0 0 2334300 0 1592600 0 0 0 4296600 4129800 3415100 0 0 0 11779 1879 11472 221580;221581;221582;221583;221584;221585;221586;221587;221588;221589;221590;221591;221592;221593;221594;221595;221596 135897;135898;135899;135900;135901;135902;135903;135904;135905;135906 135904 10 LATAWEGFTK Unmodified 1122.571 0.5709599 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.102 32.637 2 3.4007E-07 15398 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 176.79 166.81 31515000000 1226200000 1303500000 1064100000 16486000 15444000 20553000 4268800000 4160600000 3764800000 39261000 36623000 35766000 3207400000 2632800000 2800200000 30537000 17259000 21351000 2251300000 2369500000 2156500000 26417000 24944000 25000000 11780 212 11473 221597;221598;221599;221600;221601;221602;221603;221604;221605;221606;221607;221608;221609;221610;221611;221612;221613;221614;221615;221616;221617;221618;221619;221620 135907;135908;135909;135910;135911;135912;135913;135914;135915;135916;135917;135918;135919;135920;135921;135922;135923;135924 135916 16 LATCDMVISHNPQMTK Unmodified 1844.8583 0.85830985 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 23.47 22.653 2;3 2.7729E-10 9747 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 174.9 172.77 911470000 19549000 18322000 17488000 4657300 5450900 4845200 69245000 65474000 55352000 35787000 29045000 33670000 70312000 53727000 58128000 3727400 5611800 6950400 91532000 106530000 94631000 18213000 18435000 24786000 11781 1492 11474 221621;221622;221623;221624;221625;221626;221627;221628;221629;221630;221631;221632;221633;221634;221635;221636;221637;221638;221639;221640;221641;221642;221643;221644;221645;221646;221647;221648;221649;221650;221651;221652;221653;221654;221655;221656;221657;221658;221659 135925;135926;135927;135928;135929;135930;135931;135932;135933;135934;135935;135936;135937;135938;135939;135940;135941;135942;135943;135944;135945;135946;135947;135948;135949;135950 135942 24 LATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGR Unmodified 4068.0189 0.018851132 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 54.473 53.097 3;4 1.9104E-118 26045 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 323.12 320.99 3471000000 1216900000 975020000 1046700000 4622100 9057100 0 0 0 0 0 0 0 0 18183000 22758000 0 0 0 59603000 57268000 60788000 0 0 0 11782 318 11475 221660;221661;221662;221663;221664;221665;221666;221667;221668;221669;221670;221671;221672;221673;221674;221675;221676;221677;221678 135951;135952;135953;135954;135955 135955 5 LATELAR Unmodified 772.4443 0.44430282 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.839 15.416 2 0.00011623 5055 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.39 72.884 6066600000 772020000 685600000 606020000 44719000 44065000 45232000 253310000 278640000 237710000 66627000 62255000 64387000 363450000 316620000 301190000 33508000 29180000 34550000 555400000 482590000 502090000 93741000 100680000 93075000 11783 569 11476 221679;221680;221681;221682;221683;221684;221685;221686;221687;221688;221689;221690;221691;221692;221693;221694;221695;221696;221697;221698;221699;221700;221701;221702;221703;221704;221705 135956;135957;135958;135959;135960;135961;135962;135963;135964;135965;135966;135967;135968;135969;135970;135971;135972;135973;135974 135965 19 LATFEAK Unmodified 778.4225 0.42250475 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.506 16.313 2 0.0043665 5635 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 104.11 65.74 1504600000 79590000 74425000 72523000 0 0 0 197650000 192140000 195230000 0 0 0 112670000 101520000 112280000 0 0 0 120940000 131140000 114510000 0 0 0 11784 1868 11477 221706;221707;221708;221709;221710;221711;221712;221713;221714;221715;221716;221717 135975;135976;135977;135978;135979;135980;135981;135982;135983;135984;135985 135975 11 LATGANALDTAAAIR Unmodified 1427.7732 0.77324153 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 2 1 1 1 2 2 2 1 31.328 29.746 2;3 1.9319E-11 11665 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 165.58 137.38 231740000 0 0 0 1495500 1086100 994090 0 0 0 23273000 3975700 3846400 3217200 24331000 3175800 5429900 0 0 40719000 56851000 40615000 21170000 1554500 0 11785 1365 11478 221718;221719;221720;221721;221722;221723;221724;221725;221726;221727;221728;221729;221730;221731;221732;221733;221734;221735;221736;221737 135986;135987;135988;135989;135990 135986 3 LATIIDAEEDSTR Unmodified 1432.7046 0.70455285 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 29.75 28.443 2 0.00071516 12789 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 87.363 78.669 50989000 0 0 0 0 0 0 0 3306200 0 0 0 0 6556700 6894200 5525000 0 0 0 8841200 9926800 9939100 0 0 0 11786 1070 11479 221738;221739;221740;221741;221742;221743;221744 135991 135991 1 LATLLSDASR Unmodified 1045.5768 0.57677356 1776 P75818 ybjP Uncharacterized lipoprotein YbjP yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.025 25.702 2 3.5748E-07 9563 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 176.6 125.9 155200000 26317000 22696000 19100000 4150300 0 3533600 13528000 12268000 10955000 11056000 7178400 5450100 0 0 0 0 0 859930 9969600 0 8134100 0 0 0 11787 1776 11480 221745;221746;221747;221748;221749;221750;221751;221752;221753;221754;221755;221756;221757;221758 135992;135993;135994;135995;135996;135997;135998 135993 5 LATLPTYEEAIAR Unmodified 1446.7718 0.77184455 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.924 35.317 2 6.0813E-08 13952 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 156.48 134.49 11168000000 1331700000 1311400000 1193800000 70825000 83967000 76832000 480340000 457780000 472080000 141710000 140470000 137930000 595510000 598170000 622110000 125990000 77112000 81298000 976870000 938910000 878140000 135460000 117970000 121600000 11788 349 11481 221759;221760;221761;221762;221763;221764;221765;221766;221767;221768;221769;221770;221771;221772;221773;221774;221775;221776;221777;221778;221779;221780;221781;221782 135999;136000;136001;136002;136003;136004;136005;136006;136007;136008;136009;136010;136011;136012;136013;136014;136015;136016;136017;136018;136019;136020;136021;136022 136003 24 LATLSEETCQK Unmodified 1278.6126 0.61256672 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 15.995 16.835 2 3.006E-07 5766 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 158.76 127.68 114060000 0 0 18565000 0 0 0 26303000 24783000 0 0 0 0 3732600 4095800 0 0 0 0 28197000 4146400 4238400 0 0 0 11789 1878 11482 221783;221784;221785;221786;221787;221788;221789;221790;221791 136023;136024;136025;136026;136027;136028;136029 136027 7 LATPDLR Unmodified 784.4443 0.44430282 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 18.74 19.284 2 0.0018451 7563 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.79 87.685 357440000 238320000 67706000 47993000 1102100 1185600 1128600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11790 1173 11483 221792;221793;221794;221795;221796;221797;221798 136030;136031;136032;136033 136032 4 LATPFAEGEALR Unmodified 1273.6667 0.6666512 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.456 32.789 2 1.0625E-13 15508 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.97 125.86 1007800000 0 0 220890000 0 0 1815100 126960000 127520000 120490000 1522800 1466800 0 73221000 67768000 71121000 0 0 0 63017000 61000000 70974000 0 0 0 11791 1341 11484 221799;221800;221801;221802;221803;221804;221805;221806;221807;221808;221809;221810;221811;221812;221813 136034;136035;136036;136037;136038;136039;136040;136041;136042;136043;136044;136045 136041 12 LATQCGLDVAPR Unmodified 1299.6605 0.66051996 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.558 22.837 2 1.2682E-11 10152 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 183.67 171.15 299320000 16377000 15799000 15219000 0 0 0 24045000 18511000 24040000 0 0 0 26761000 31536000 29665000 0 0 0 29915000 33130000 34319000 0 0 0 11792 180 11485 221814;221815;221816;221817;221818;221819;221820;221821;221822;221823;221824;221825 136046;136047;136048;136049;136050;136051;136052;136053;136054;136055;136056 136047 11 LATQQSHIPAK Unmodified 1192.6564 0.65642086 291 P0A6Y1 ihfB Integration host factor subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 11.455 12.063 2;3 1.1788E-05 3168 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.98 155.59 4410500000 497130000 538880000 446570000 11133000 3025700 9713700 255890000 268250000 289310000 154430000 130490000 132230000 262090000 220960000 216760000 128770000 121850000 111260000 214170000 186330000 170080000 11475000 8424200 21254000 11793 291 11486 221826;221827;221828;221829;221830;221831;221832;221833;221834;221835;221836;221837;221838;221839;221840;221841;221842;221843;221844;221845;221846;221847;221848;221849;221850;221851;221852;221853;221854;221855;221856;221857;221858;221859;221860;221861;221862;221863;221864;221865;221866;221867;221868;221869;221870 136057;136058;136059;136060;136061;136062;136063;136064;136065;136066;136067;136068;136069;136070;136071;136072;136073;136074;136075;136076;136077;136078;136079;136080;136081;136082;136083;136084;136085;136086;136087;136088;136089;136090;136091;136092;136093;136094 136086 38 LATVWNIPVATNVATADFIIQSPHFNDAVDILIPDYQR Unmodified 4237.1848 0.18479425 305 P0A731 mgsA Methylglyoxal synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.62 54.156 4 8.0809E-08 27037 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 81.304 77.382 388940000 44509000 39225000 25293000 0 1717600 0 31931000 33948000 35633000 0 0 0 24131000 27277000 23342000 0 0 0 39800000 31513000 30624000 0 0 0 11794 305 11487 221871;221872;221873;221874;221875;221876;221877;221878;221879;221880;221881;221882;221883 136095;136096 136096 2 LAVADNEHLR Unmodified 1136.5938 0.5938206 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.596 15.088 3 0.00011419 4797 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.882 83.274 271700000 35310000 34820000 30034000 0 1605500 0 46366000 43898000 0 4685500 3322900 3004100 0 0 0 0 0 0 62110000 0 0 2362700 2225400 1953700 11795 1197 11488 221884;221885;221886;221887;221888;221889;221890;221891;221892;221893;221894;221895;221896;221897;221898;221899 136097;136098;136099;136100;136101;136102;136103;136104;136105;136106 136103 10 LAVCSMPIGQSLPSHSVIVPR Unmodified 2247.1868 0.18677827 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1 3 3 2 4 4 5 3 3 2 1 1 3 3 3 3 2 2 39.664 37.8 2;3;4;5 1.32E-62 15331 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 273.99 260.66 14747000000 186220000 186980000 159110000 3866800 3415800 3931000 141340000 131760000 126560000 524820000 6421300000 5849000000 107110000 103530000 103600000 10275000 5528600 0 171320000 176290000 162550000 55244000 62050000 50802000 11796 497 11489 221900;221901;221902;221903;221904;221905;221906;221907;221908;221909;221910;221911;221912;221913;221914;221915;221916;221917;221918;221919;221920;221921;221922;221923;221924;221925;221926;221927;221928;221929;221930;221931;221932;221933;221934;221935;221936;221937;221938;221939;221940;221941;221942;221943;221944;221945;221946;221947;221948;221949;221950;221951;221952;221953;221954;221955;221956 136107;136108;136109;136110;136111;136112;136113;136114;136115;136116;136117;136118;136119;136120;136121;136122;136123;136124;136125;136126;136127;136128;136129;136130;136131;136132;136133;136134;136135;136136;136137;136138;136139;136140 136109 34 LAVCSMPIGQSLPSHSVIVPR Oxidation (M) 2263.1817 0.1816929 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 6 8 9 36.131 33.654 2;3;4 2.8742E-34 12632 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 210.41 190.3 1517500000 0 0 0 0 0 0 0 0 0 552380000 580890000 384220000 0 0 0 0 0 0 0 0 0 0 0 0 11797 497 11489 221957;221958;221959;221960;221961;221962;221963;221964;221965;221966;221967;221968;221969;221970;221971;221972;221973;221974;221975;221976;221977;221978;221979 136141;136142;136143;136144;136145;136146;136147;136148;136149;136150;136151;136152;136153;136154;136155;136156;136157;136158;136159;136160;136161;136162;136163;136164;136165;136166;136167;136168;136169;136170;136171;136172;136173 136165 293 33 LAVELAK Unmodified 742.45889 0.45889025 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.461 20.785 2 0.0060552 8487 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.071 24.716 6794900000 375820000 417170000 378830000 937710 902260 1029300 556840000 542110000 524360000 0 1220200 0 648590000 652910000 521890000 0 0 0 721840000 694120000 756360000 0 0 0 11798 597 11490 221980;221981;221982;221983;221984;221985;221986;221987;221988;221989;221990;221991;221992;221993;221994;221995 136174;136175;136176;136177;136178;136179;136180;136181;136182;136183;136184 136174 11 LAVFAVR Unmodified 774.47521 0.47520902 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.463 28.198 2 0.0019599 12368 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 120.76 115.93 638070000 23779000 20900000 17829000 11790000 10262000 11375000 60548000 61745000 55621000 61776000 54872000 49942000 16448000 16492000 15274000 8823600 6668000 6185500 41524000 34051000 35579000 0 0 16586000 11799 122 11491 221996;221997;221998;221999;222000;222001;222002;222003;222004;222005;222006;222007;222008;222009;222010;222011;222012;222013;222014;222015;222016;222017 136185;136186;136187;136188;136189;136190;136191;136192;136193 136193 9 LAVGDPEHVPAGIYAK Unmodified 1635.8621 0.86205654 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 28.397 27.392 2;3 2.1297E-13 12532 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 162.49 141.71 939260000 367640000 316300000 255330000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11800 1464 11492 222018;222019;222020;222021;222022;222023 136194;136195;136196;136197;136198 136196 5 LAVGEALTNIAATQIGDIK Unmodified 1897.052 0.052042156 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 51.797 50.549 2;3 6.5996E-10 24818 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.23 111.1 694630000 160330000 155330000 143300000 0 880430 0 20034000 17681000 14138000 0 0 0 29699000 30052000 26519000 0 0 0 34097000 32238000 30324000 0 0 0 11801 1107 11493 222024;222025;222026;222027;222028;222029;222030;222031;222032;222033;222034;222035;222036;222037;222038;222039;222040;222041;222042;222043;222044;222045;222046;222047;222048 136199;136200;136201;136202;136203;136204;136205;136206;136207;136208;136209;136210;136211;136212;136213 136203 15 LAVGEALTNIAATQIGDIKR Unmodified 2053.1532 0.15315318 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 46.106 44.661 3 1.8063E-08 21936 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.66 107.31 100060000 27361000 23634000 16869000 1655600 998650 971830 5799500 0 0 0 0 0 3405000 2452600 2392400 0 0 0 4709300 4136000 5676800 0 0 0 11802 1107 11494 222049;222050;222051;222052;222053;222054;222055;222056;222057;222058;222059;222060;222061 136214;136215 136214 2 LAVGLYDGMNLDWLAYR Unmodified 1968.9768 0.97676872 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 3 1 2 2 2 2 2 2 55.035 53.569 2;3 3.3594E-24 25420 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 250.94 227.26 8122700000 1495000000 1572600000 1521500000 8156900 0 7261100 578050000 467780000 464690000 0 0 1229200 352310000 358900000 311650000 0 0 0 357950000 322030000 303510000 0 0 0 11803 397 11495 222062;222063;222064;222065;222066;222067;222068;222069;222070;222071;222072;222073;222074;222075;222076;222077;222078;222079;222080;222081;222082;222083;222084;222085;222086;222087;222088;222089 136216;136217;136218;136219;136220;136221;136222;136223;136224;136225;136226;136227;136228;136229;136230;136231;136232;136233;136234;136235;136236;136237;136238;136239;136240;136241 136238 26 LAVGYTLDELMNDITGGR Unmodified 1936.9564 0.95642721 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 3 2 1 1 55.52 54.099 2;3 1.8574E-36 26676 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 286.29 278.75 952270000 199370000 221500000 183290000 0 0 0 0 0 0 0 0 0 23356000 22531000 22987000 0 0 0 95139000 89567000 90493000 0 1683200 2349300 11804 65 11496 222090;222091;222092;222093;222094;222095;222096;222097;222098;222099;222100;222101;222102;222103;222104;222105;222106;222107;222108;222109;222110 136242;136243;136244;136245;136246;136247;136248;136249;136250;136251;136252 136244 11 LAVHLMLEQLGCEVINLGIIR Unmodified 2390.3178 0.31779245 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.361 53.888 3 2.1163E-10 26863 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.74 118.86 285650000 30629000 37507000 24344000 0 0 0 31541000 29297000 28336000 0 0 0 18529000 11882000 9189000 0 0 0 30350000 17779000 16269000 0 0 0 11805 1076 11497 222111;222112;222113;222114;222115;222116;222117;222118;222119;222120;222121;222122 136253;136254;136255;136256;136257;136258;136259 136253 6 LAVNAGDFIAK Unmodified 1117.6132 0.61315906 1263 P25552 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 33.756 32.27 2 0.047445 15188 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 52.278 48.166 134300000 16364000 22192000 16111000 0 0 0 11980000 9610200 9068500 0 0 0 0 0 11342000 0 0 0 17231000 0 20400000 0 0 0 11806 1263 11498 222123;222124;222125;222126;222127;222128;222129;222130;222131 136260;136261 136261 0 LAVNFGAEILK Unmodified 1173.6758 0.67575932 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 43.436 41.736 1;2 0.00020622 20466 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.7 68.892 1168500000 242390000 208770000 187980000 976980 890170 995500 178620000 148940000 135680000 990030 1204600 836020 0 4551800 7300100 0 0 0 15287000 15678000 17372000 0 0 0 11807 401 11499 222132;222133;222134;222135;222136;222137;222138;222139;222140;222141;222142;222143;222144;222145;222146;222147;222148;222149;222150;222151;222152;222153;222154 136262;136263;136264;136265 136264 2 LAVNIGLEILK Unmodified 1181.7384 0.73835958 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 1 2 2 3 1 1 1 1 1 1 50.045 48.645 2 1.2322E-05 23819 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 144.65 135.29 4394600000 284440000 209630000 196300000 1926300 1471200 1597900 612480000 603930000 602970000 0 0 0 365360000 265080000 262590000 0 0 0 436010000 313850000 236960000 0 0 0 11808 402 11500 222155;222156;222157;222158;222159;222160;222161;222162;222163;222164;222165;222166;222167;222168;222169;222170;222171;222172;222173;222174;222175;222176;222177;222178 136266;136267;136268;136269;136270;136271;136272;136273;136274;136275;136276;136277;136278;136279;136280;136281;136282;136283;136284;136285;136286;136287;136288;136289;136290;136291;136292;136293;136294;136295;136296;136297;136298;136299;136300;136301;136302;136303;136304;136305;136306;136307 136273 40 LAVPLIK Unmodified 752.51601 0.5160112 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.344 31.004 2 0.0029824 14566 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 109.88 81.242 1633500000 89070000 80985000 65254000 0 0 0 168510000 137930000 136980000 0 0 0 123550000 115700000 120870000 0 0 0 191910000 217330000 185390000 0 0 0 11809 1489 11501 222179;222180;222181;222182;222183;222184;222185;222186;222187;222188;222189;222190 136308;136309;136310;136311;136312;136313;136314;136315;136316;136317;136318;136319 136312 12 LAVPTLIH Unmodified 862.52764 0.52763852 1651 P62672 apaG Protein ApaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.723 35.945 2 0.00080295 17191 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.51 110.87 238100000 30077000 35058000 31438000 1547500 1363200 1283800 25675000 27633000 21298000 0 1825300 3152700 9210900 8907500 6608900 0 0 0 11785000 9876900 10163000 0 0 1193300 11810 1651 11502 222191;222192;222193;222194;222195;222196;222197;222198;222199;222200;222201;222202;222203;222204;222205;222206;222207;222208 136320;136321;136322;136323;136324;136325;136326;136327;136328;136329;136330;136331 136328 12 LAVQNEWEGLVIYGAVR Unmodified 1916.0156 0.01559707 454 P0A8R0 rraA Regulator of ribonuclease activity A yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.34 51.9 2 1.9584E-10 25850 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 142.89 120.17 70040000 8772900 6903500 7680400 0 0 0 4903100 4228800 4686600 0 0 0 5061400 5131300 5367100 0 0 0 5055500 6299900 5949800 0 0 0 11811 454 11503 222209;222210;222211;222212;222213;222214;222215;222216;222217;222218;222219;222220 136332;136333 136332 2 LAVVHDK Unmodified 780.44939 0.4493882 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.124 11.522 2 0.02496 2388 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.138 45.66 727260000 0 0 0 0 0 0 125060000 117010000 115000000 19907000 18880000 20628000 0 0 0 10853000 8026800 5904100 90625000 89284000 84160000 7802800 6882100 7236100 11812 30 11504 222221;222222;222223;222224;222225;222226;222227;222228;222229;222230;222231;222232;222233;222234;222235 136334;136335;136336;136337;136338;136339 136336 6 LAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLK Unmodified 4137.0227 0.022739222 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.392 53.919 3;4 2.7536E-23 26446 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 153.06 151.53 1705000000 271120000 197690000 196100000 0 0 0 79516000 86714000 70134000 0 0 0 94884000 76786000 70422000 0 0 0 174990000 203960000 182720000 0 0 0 11813 28 11505 222236;222237;222238;222239;222240;222241;222242;222243;222244;222245;222246;222247;222248;222249;222250;222251;222252;222253;222254;222255;222256;222257;222258;222259 136340;136341;136342;136343;136344;136345;136346;136347;136348;136349;136350;136351;136352;136353 136345 14 LAVVTIK Unmodified 742.49528 0.49527576 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.154 22.43 2 0.0066956 9696 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 94.401 73.541 294350000 29262000 27287000 26856000 2618200 2538900 2301500 21154000 21924000 22863000 4027200 3288000 0 17720000 14352000 12317000 0 0 0 21657000 27900000 26996000 3376700 2806100 3101800 11814 582 11506 222260;222261;222262;222263;222264;222265;222266;222267;222268;222269;222270;222271;222272;222273;222274;222275;222276;222277;222278;222279 136354;136355;136356;136357 136354 3 LAVYSTK Unmodified 780.43815 0.43815481 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.08 14.921 2 0.0018451 4487 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 122.79 114.97 1034000000 85898000 71535000 64500000 0 0 0 137860000 132580000 131890000 0 0 0 73636000 57655000 48102000 0 0 0 83343000 74793000 72164000 0 0 0 11815 1608 11507 222280;222281;222282;222283;222284;222285;222286;222287;222288;222289;222290;222291 136358;136359;136360;136361;136362;136363;136364;136365;136366 136366 9 LAWSYQTVHHDLWDMDLPAQPTLADITVNGQK Unmodified 3662.7828 0.78276695 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 52.035 50.666 4 0.11287 18382 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 26.167 24.676 14913000 0 0 0 2394000 2678900 4173100 0 0 0 3090500 0 0 0 0 0 0 0 0 0 0 0 0 2576300 0 11816 1115 11508 222292;222293;222294;222295;222296 136367 136367 1 LAYDGLNYNTYR Unmodified 1461.6888 0.6888432 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.61 31.177 2 6.0811E-17 14976 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 256.38 253.62 1450800000 110570000 100250000 100580000 3498600 2628600 2892800 124590000 125170000 125260000 4191600 2633200 0 108330000 110180000 99458000 2208500 0 0 141840000 152170000 134360000 0 0 0 11817 688 11509 222297;222298;222299;222300;222301;222302;222303;222304;222305;222306;222307;222308;222309;222310;222311;222312;222313;222314 136368;136369;136370;136371;136372;136373;136374;136375;136376;136377;136378;136379;136380 136369 11 LAYQLADK Unmodified 920.49673 0.49673232 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.847 20.232 2 0.00081197 8086 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.13 96.302 974810000 38185000 44145000 45103000 21742000 21803000 21732000 46189000 56074000 48688000 0 0 0 45783000 0 43844000 0 0 0 125730000 142570000 126290000 52919000 46386000 47624000 11818 215 11510 222315;222316;222317;222318;222319;222320;222321;222322;222323;222324;222325;222326;222327;222328;222329;222330;222331 136381;136382;136383;136384;136385;136386;136387;136388;136389 136382 8 LAYQLADKLR Unmodified 1189.6819 0.68190733 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 24.478 23.435 2;3 0.0043991 8074 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 78.264 61.593 152690000 0 0 0 8042800 9767300 9266800 0 0 0 8806400 9847000 11174000 0 0 0 2431200 4173500 4180300 0 0 0 29493000 28274000 27236000 11819 215 11511 222332;222333;222334;222335;222336;222337;222338;222339;222340;222341;222342;222343;222344;222345;222346;222347;222348;222349;222350;222351;222352 136390;136391;136392;136393;136394;136395;136396;136397;136398;136399;136400 136395 8 LAYVEAVSK Unmodified 978.5386 0.53859714 1113 P15723 dgt Deoxyguanosinetriphosphate triphosphohydrolase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 21.218 21.72 2 0.1054 8599 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 47.96 23.805 35667000 11087000 8540800 8145000 0 0 0 0 0 0 0 0 0 2379800 0 2778900 0 0 0 0 0 2735800 0 0 0 11820 1113 11512 222353;222354;222355;222356;222357;222358 136401;136402 136402 0 LAYVGVTR Unmodified 877.50215 0.50215205 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.562 20.783 2 0.00093582 6247 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 116.88 83.146 182000000 13504000 12355000 10642000 0 0 0 12066000 0 10223000 0 1695900 0 8688100 9633700 8270300 21735000 14934000 15179000 9395300 10669000 12455000 3524600 3471000 3561900 11821 80 11513 222359;222360;222361;222362;222363;222364;222365;222366;222367;222368;222369;222370;222371;222372;222373;222374;222375;222376 136403;136404;136405;136406;136407 136403 5 LAYVTFESGR Unmodified 1141.5768 0.57677356 398 P0A855 tolB Protein TolB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.935 29.203 2 7.0119E-05 9902 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 133.23 119.52 455640000 0 61396000 58914000 10365000 10676000 10600000 55772000 56306000 0 16959000 15881000 13729000 0 0 0 0 0 0 65246000 0 45101000 10421000 12487000 11786000 11822 398 11514 222377;222378;222379;222380;222381;222382;222383;222384;222385;222386;222387;222388;222389;222390;222391;222392;222393;222394 136408;136409;136410;136411;136412;136413;136414;136415;136416;136417;136418;136419;136420;136421 136419 14 LCANVPAQHAIQTALGGYQSISEFITPGGR Unmodified 3155.5822 0.58221665 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.228 51.773 3 2.0264E-16 25751 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.19 133.64 187040000 0 0 0 1263500 0 0 19361000 19943000 16705000 4329000 0 0 20554000 0 18227000 0 0 0 28162000 23481000 30237000 2949000 0 1826000 11823 491 11515 222395;222396;222397;222398;222399;222400;222401;222402;222403;222404;222405;222406 136422;136423;136424;136425;136426;136427;136428 136422 7 LCDLWLAPK Unmodified 1114.5845 0.58450147 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.878 38.256 2 0.00069069 14949 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 103.74 99.004 965520000 28247000 24916000 25127000 5114300 6898900 5711300 77133000 70126000 67086000 32506000 22558000 20873000 55042000 0 46888000 7863100 4407000 5249300 89164000 97198000 89870000 66267000 60147000 57128000 11824 205 11516 222407;222408;222409;222410;222411;222412;222413;222414;222415;222416;222417;222418;222419;222420;222421;222422;222423;222424;222425;222426;222427;222428;222429 136429;136430;136431;136432;136433;136434;136435;136436;136437;136438;136439;136440;136441;136442;136443;136444;136445 136437 17 LCDQWLAPK Unmodified 1129.559 0.559015 1157 P19319 narZ Respiratory nitrate reductase 2 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 30.77 29.024 2 0.0043927 13982 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.192 67.368 45467000 0 0 0 916830 1467100 1299500 10431000 10843000 12112000 0 1777100 2790500 0 3830600 0 0 0 0 0 0 0 0 0 0 11825 1157 11517 222430;222431;222432;222433;222434;222435;222436;222437;222438 136446;136447;136448 136446 3 LCDRDIEAWLDEGR Unmodified 1746.7995 0.79953264 1315 P28248 dcd Deoxycytidine triphosphate deaminase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.662 40.786 3 1.438E-06 20060 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.75 113.77 287040000 28965000 29916000 33200000 0 0 0 25079000 32211000 26493000 2299700 2447100 2440300 10425000 11774000 10865000 0 0 0 26784000 21809000 22327000 0 0 0 11826 1315 11518 222439;222440;222441;222442;222443;222444;222445;222446;222447;222448;222449;222450;222451;222452;222453 136449;136450;136451;136452;136453;136454;136455;136456;136457;136458;136459;136460 136455 9 LCEGSCTLNDEFGAVTIGNIER Unmodified 2454.1155 0.1155234 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 2 2 47.016 45.606 2;3 7.6217E-35 22555 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 265.46 260.75 514770000 114120000 97107000 96051000 0 0 0 36930000 37746000 27390000 0 0 0 13015000 13479000 12972000 0 0 0 14155000 24845000 26961000 0 0 0 11827 219 11519 222454;222455;222456;222457;222458;222459;222460;222461;222462;222463;222464;222465;222466;222467;222468;222469;222470;222471;222472;222473 136461;136462;136463;136464;136465;136466;136467;136468;136469;136470;136471;136472;136473 136464 12 LCEHCLNPACVATCPSGAIYK Unmodified 2420.0745 0.074526986 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 30.05 28.597 2;3 6.1183E-16 13285 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 190.19 185.64 1117100000 23843000 23530000 21320000 2700700 3110600 3290000 82831000 70666000 75472000 16612000 17427000 17621000 84356000 82408000 83072000 0 3472700 3890300 106310000 99509000 100250000 66531000 61549000 67343000 11828 1067 11520 222474;222475;222476;222477;222478;222479;222480;222481;222482;222483;222484;222485;222486;222487;222488;222489;222490;222491;222492;222493;222494;222495;222496;222497;222498;222499;222500;222501;222502;222503;222504;222505;222506;222507;222508 136474;136475;136476;136477;136478;136479;136480;136481;136482;136483;136484;136485;136486;136487;136488;136489;136490;136491;136492;136493;136494;136495;136496;136497 136490 24 LCEHCLNPACVATCPSGAIYKR Unmodified 2576.1756 0.17563801 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 26.038 24.653 3;4 0.00016222 8647 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 70.452 70.276 139050000 0 0 0 1900900 0 0 0 0 0 9361400 0 13106000 0 0 0 0 0 0 0 0 0 40649000 31767000 42263000 11829 1067 11521 222509;222510;222511;222512;222513;222514;222515;222516 136498;136499;136500;136501;136502;136503;136504 136501 6 LCEMNFSQLR Unmodified 1296.5955 0.59547686 810 P0ADU7 yqiB Uncharacterized protein YqiB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 32.437 31.948 2 7.3607E-05 10550 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 148.05 127.15 48706000 4055300 0 3107900 0 0 0 0 0 0 0 0 0 0 0 0 15883000 11226000 14433000 0 0 0 0 0 0 11830 810 11522 222517;222518;222519;222520;222521 136505;136506;136507 136506 3 LCFHIFTDYFGDDDRK Unmodified 2047.9098 0.90981137 1289 P27128 rfaI Lipopolysaccharide 1,3-galactosyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.66 42.901 4 0.026412 17580 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 40.857 39.76 55443000 0 0 0 0 0 0 6802600 5379500 6192000 5117300 4499100 2889600 3049200 4397700 2548200 0 0 0 4125900 5488100 4953300 0 0 0 11831 1289 11523 222522;222523;222524;222525;222526;222527;222528;222529;222530;222531;222532;222533 136508;136509;136510 136508 3 LCGDGGFTR Unmodified 981.43381 0.43381449 1310 P27833 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.446 16.088 2 0.00031838 5216 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 116.25 104.88 341590000 20986000 21953000 20968000 520110 516920 366690 28713000 31824000 27486000 1373600 827900 733250 29653000 25242000 26837000 0 0 0 38839000 30107000 31833000 978490 945190 891670 11832 1310 11524 222534;222535;222536;222537;222538;222539;222540;222541;222542;222543;222544;222545;222546;222547;222548;222549;222550;222551;222552;222553;222554 136511;136512;136513;136514;136515;136516;136517;136518;136519;136520;136521 136519 11 LCGSSMQALHDAAR Unmodified 1515.6922 0.6922308 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 17.089 17.823 2;3 5.5281E-12 6400 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 179.19 168.37 396040000 122600000 119980000 99966000 1956900 2228500 1574500 6834200 5019100 4486200 0 0 0 2569000 4988500 4470200 0 0 0 7482500 6994200 4895600 0 0 0 11833 1168 11525 222555;222556;222557;222558;222559;222560;222561;222562;222563;222564;222565;222566;222567;222568;222569;222570;222571;222572;222573 136522;136523;136524;136525;136526;136527 136525 6 LCGVIFDWDK Unmodified 1251.5958 0.59579444 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 47.213 45.965 2 0.038962 22832 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 54.066 49.73 48394000 0 0 0 0 0 0 11680000 10333000 8500800 0 0 0 4223500 4483900 5280200 0 0 3892600 0 0 0 0 0 0 11834 520 11526 222574;222575;222576;222577;222578;222579;222580 136528 136528 1 LCGVIFDWDKYNLELCEEISK Unmodified 2630.2397 0.23966128 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 53.627 52.152 3 4.9746E-07 25793 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 102.48 99.598 144270000 0 0 0 0 0 0 31900000 33424000 28926000 0 0 0 17177000 17755000 15085000 0 0 0 0 0 0 0 0 0 11835 520 11527 222581;222582;222583;222584;222585;222586 136529;136530 136530 2 LCISGCPYK Unmodified 1096.5045 0.50453659 1156 P19318 narY Respiratory nitrate reductase 2 beta chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 22.205 21.701 2 0.023958 9014 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 72.485 62.897 36710000 0 0 0 0 0 300650 8900500 7809000 5837700 7296200 2491600 2516900 0 0 0 0 0 0 0 0 0 1557100 0 0 11836 1156 11528 222587;222588;222589;222590;222591;222592;222593;222594 136531;136532 136531 0 LCITQSAVSQR Unmodified 1261.6449 0.6448699 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 20.738 20.46 2 2.16E-10 5891 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 191.85 179.32 78668000 0 0 0 0 0 0 0 0 0 4481700 2500500 3430300 0 0 0 28790000 20460000 19006000 0 0 0 0 0 0 11837 456 11529 222595;222596;222597;222598;222599;222600 136533;136534;136535;136536 136534 4 LCLFHWLR Unmodified 1143.6012 0.60115459 1611 P54901 csiE Stationary phase-inducible protein CsiE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.685 40.833 3 0.001092 16572 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 91.906 83.981 56547000 3136500 3912000 2852900 482800 574570 0 0 7214400 10082000 3723100 4316400 5648500 4630500 2610900 2577400 0 0 0 0 0 4785500 0 0 0 11838 1611 11530 222601;222602;222603;222604;222605;222606;222607;222608;222609;222610;222611;222612;222613;222614 136537;136538;136539 136538 3 LCLGCMTFGEPDR Unmodified 1554.6629 0.6629045 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.328 40.629 2 5.8696E-05 19663 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 90.685 90.685 493450000 90455000 75268000 85054000 0 0 0 45388000 39342000 42132000 0 0 0 18172000 19685000 16162000 0 0 0 19215000 19667000 22913000 0 0 0 11839 1934 11531 222615;222616;222617;222618;222619;222620;222621;222622;222623;222624;222625;222626 136540 136540 0 LCLMDTQR Unmodified 1035.4841 0.4841355 659 P0ABI4 corA Magnesium transport protein CorA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.434 22.677 2 0.00039154 9387 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 141.78 127.01 195690000 8105300 5118300 4944800 977980 1175600 1099400 11247000 8773800 4129800 7334600 6107900 4925100 27860000 25975000 24873000 0 2344300 2068600 7245200 14286000 18373000 2095100 3324700 3307300 11840 659 11532 222627;222628;222629;222630;222631;222632;222633;222634;222635;222636;222637;222638;222639;222640;222641;222642;222643;222644;222645;222646;222647;222648;222649 136541;136542;136543;136544;136545;136546;136547;136548 136546 7 LCMHMQSK Unmodified 1033.4507 0.45072688 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.115 12.799 2 0.0029529 3587 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 96.19 80.037 514290000 44547000 37452000 35005000 0 0 0 38847000 40512000 31102000 5858300 4916300 1218900 38327000 31982000 34170000 0 0 0 52837000 54090000 58365000 0 0 5059400 11841 744 11533 222650;222651;222652;222653;222654;222655;222656;222657;222658;222659;222660;222661;222662;222663;222664;222665 136549;136550;136551;136552;136553;136554;136555;136556;136557;136558 136555 10 LCPSFITSQFTPALK Unmodified 1708.8858 0.88582845 1611 P54901 csiE Stationary phase-inducible protein CsiE yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 48.805 47.367 2 7.1669E-05 23307 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 99.671 94.027 116470000 7137600 7180200 0 0 0 0 14908000 15531000 16506000 5939300 4006500 2462500 6338500 7167900 0 0 0 0 9418900 9183500 10686000 0 0 0 11842 1611 11534 222666;222667;222668;222669;222670;222671;222672;222673;222674;222675;222676;222677;222678 136559;136560 136560 2 LCQMAINELR Unmodified 1246.6162 0.61621231 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 29.299 28.028 2 4.5617E-05 13197 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.91 155.23 2030700000 246950000 251720000 237560000 0 511030 0 215690000 207580000 186370000 0 0 0 84680000 103010000 100240000 0 0 0 115030000 132940000 148430000 0 0 0 11843 1154 11535 222679;222680;222681;222682;222683;222684;222685;222686;222687;222688;222689;222690;222691 136561;136562;136563;136564;136565;136566;136567;136568;136569;136570;136571;136572 136563 11 LCQMAINELRLETGNESLQFIAVR Unmodified 2804.4313 0.43131865 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.907 47.567 4 0.1623 23163 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 15.316 12.875 1127600000 147840000 141920000 133390000 0 0 0 92508000 78296000 83808000 0 0 0 56668000 53381000 54885000 0 0 0 91775000 98244000 94859000 0 0 0 11844 1154 11536 222692;222693;222694;222695;222696;222697;222698;222699;222700;222701;222702;222703 136573;136574 136573 2 LCQSGCTR Unmodified 980.41678 0.41678422 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 5.3806 6.2858 2 0.0011803 1310 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 111.01 103.86 193650000 0 0 0 0 0 0 59997000 49348000 62305000 0 0 0 7123600 5424000 7591500 0 0 0 1856800 0 0 0 0 0 11845 1861 11537 222704;222705;222706;222707;222708;222709;222710 136575;136576;136577;136578;136579 136576 4 LCRPSEVVLEILPDAQK Unmodified 1966.0557 0.055747325 640 P0AB96 arsC Arsenate reductase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 42.383 40.684 3 2.8048E-05 20268 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.94 82.342 199930000 15543000 14891000 15431000 707280 0 0 21019000 21378000 18820000 0 0 0 15344000 14576000 13837000 0 0 0 14858000 15888000 17639000 0 0 0 11846 640 11538 222711;222712;222713;222714;222715;222716;222717;222718;222719;222720;222721;222722;222723 136580;136581;136582;136583;136584;136585 136581 6 LCSHDDTQK Unmodified 1102.4713 0.47132221 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 5.1627 6.0241 2;3 1.1422E-06 955 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 194.22 194.22 1026800000 66835000 86137000 73859000 0 264450 0 167310000 165510000 157050000 0 0 0 52005000 51152000 44594000 0 0 0 57630000 56815000 47621000 0 0 0 11847 145 11539 222724;222725;222726;222727;222728;222729;222730;222731;222732;222733;222734;222735;222736;222737;222738;222739;222740;222741;222742;222743;222744;222745;222746;222747;222748 136586;136587;136588;136589;136590;136591;136592;136593;136594;136595;136596;136597;136598;136599;136600;136601;136602;136603;136604;136605 136591 20 LCSLSVFDAFR Unmodified 1313.6438 0.64380726 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 50.377 49.039 2 4.6806E-05 23959 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.35 144.3 109880000 31981000 34252000 33850000 3120200 3585400 3091300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11848 46 11540 222749;222750;222751;222752;222753;222754 136606;136607;136608;136609 136608 4 LCVEQCK Unmodified 935.42047 0.42047261 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.302 12.929 2 0.0012721 2965 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 132.94 103.37 7227400000 86504000 70108000 75382000 3752600 3799200 3636300 0 90700000 99820000 15610000 0 11538000 74179000 77093000 73658000 2510600000 1835500000 1808500000 122690000 112920000 109970000 14414000 13648000 13344000 11849 36 11541 222755;222756;222757;222758;222759;222760;222761;222762;222763;222764;222765;222766;222767;222768;222769;222770;222771;222772;222773;222774;222775;222776;222777;222778 136610;136611;136612;136613;136614;136615;136616;136617;136618;136619;136620;136621;136622;136623;136624;136625;136626;136627;136628;136629;136630;136631 136612 22 LDAALGQHQIK Unmodified 1192.6564 0.65642086 380 P0A7Y4 rnhA Ribonuclease HI yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 15.195 15.965 2 0.0024659 5363 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 72.23 43.312 16359000 4075300 2922600 3886700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2220500 3254300 0 0 0 11850 380 11542 222779;222780;222781;222782;222783 136632 136632 0 LDAALQDEVAASEGFLK Unmodified 1775.8941 0.89414453 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 48.418 47.19 2;3 6.5657E-11 23123 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 180.54 172.03 861620000 292940000 284190000 270570000 0 0 0 0 0 0 0 0 0 2676800 1823500 1795600 0 0 0 2064400 3084400 2478700 0 0 0 11851 217 11543 222784;222785;222786;222787;222788;222789;222790;222791;222792;222793;222794;222795 136633;136634;136635;136636;136637;136638;136639;136640 136633 8 LDAATMQQPVSDADIQSYYDQHQDQFTQPQR Unmodified 3623.6223 0.62230314 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 41.19 39.356 3;4 1.2274E-54 18607 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 230.12 227.68 697100000 35551000 25511000 19563000 11110000 10873000 9286700 49717000 48987000 43011000 11090000 29893000 27284000 48375000 49650000 51114000 0 0 0 57011000 59377000 65109000 13420000 16739000 14424000 11852 819 11544 222796;222797;222798;222799;222800;222801;222802;222803;222804;222805;222806;222807;222808;222809;222810;222811;222812;222813;222814;222815;222816;222817;222818;222819;222820;222821;222822;222823;222824;222825;222826;222827;222828;222829;222830;222831;222832;222833;222834;222835;222836 136641;136642;136643;136644;136645;136646;136647;136648;136649;136650;136651;136652;136653;136654;136655;136656;136657;136658;136659;136660;136661;136662;136663;136664;136665;136666;136667;136668;136669;136670;136671;136672 136668 32 LDAEGETMLTIPGNPPNLLR Unmodified 2150.1042 0.10415408 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 1 51.511 50.263 2;3 6.6419E-18 24571 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 212.59 191.28 340100000 45492000 41920000 36398000 18131000 21264000 21085000 11897000 14814000 13787000 0 4226500 7696600 16090000 14328000 12749000 0 0 1230200 17596000 16914000 15548000 3130000 3856800 1949100 11853 1807 11545 222837;222838;222839;222840;222841;222842;222843;222844;222845;222846;222847;222848;222849;222850;222851;222852;222853;222854;222855;222856;222857;222858;222859;222860;222861;222862;222863;222864;222865;222866;222867;222868;222869;222870;222871;222872;222873;222874;222875 136673;136674;136675;136676;136677;136678;136679;136680;136681;136682 136680 10 LDAFAELEPQR Unmodified 1287.6459 0.64591575 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 38.416 36.664 2 2.3937E-07 18037 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.16 152.01 282660000 0 0 0 0 0 0 64014000 62850000 60963000 0 0 0 23851000 20864000 23814000 0 0 0 8401600 9101700 8798300 0 0 0 11854 1861 11546 222876;222877;222878;222879;222880;222881;222882;222883;222884 136683;136684;136685;136686;136687 136684 5 LDAHVLITDLSMPGDK Unmodified 1723.8815 0.88147135 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 1 2 2 2 2 2 1 2 1 1 1 2 2 2 2 2 1 45.087 43.58 2;3 2.3043E-18 21357 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 222.99 220.24 1134800000 152520000 137750000 113130000 3415500 2658300 3040400 95928000 15023000 85408000 20091000 15803000 15158000 71882000 10610000 63822000 10758000 7330800 7741700 90750000 96744000 91976000 9474700 7496700 6328800 11855 1050 11547 222885;222886;222887;222888;222889;222890;222891;222892;222893;222894;222895;222896;222897;222898;222899;222900;222901;222902;222903;222904;222905;222906;222907;222908;222909;222910;222911;222912;222913;222914;222915;222916;222917;222918;222919;222920;222921;222922;222923;222924 136688;136689;136690;136691;136692;136693;136694;136695;136696;136697;136698;136699;136700;136701;136702;136703;136704;136705;136706;136707;136708;136709;136710 136701 22 LDAHVLITDLSMPGDKYGDGITLIK Unmodified 2684.4095 0.4095038 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 1 1 2 1 2 2 2 50.993 49.841 3;4 9.2143E-12 19992 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 134.42 133.48 602180000 6059100 0 3991500 29076000 31011000 25589000 20574000 0 0 83167000 81298000 87623000 0 0 0 26842000 34011000 53142000 0 0 5250000 37323000 37151000 40072000 11856 1050 11548 222925;222926;222927;222928;222929;222930;222931;222932;222933;222934;222935;222936;222937;222938;222939;222940;222941;222942;222943;222944;222945;222946;222947;222948;222949;222950 136711;136712;136713;136714;136715;136716;136717;136718;136719;136720;136721;136722;136723;136724;136725;136726 136716 16 LDAIDAWSIR Unmodified 1158.6033 0.60332266 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.497 41.982 2 0.056404 20834 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 47.706 43.813 158800000 15874000 14476000 8308300 0 0 0 11766000 14454000 11627000 0 0 0 10790000 6934500 7744400 0 0 0 17596000 19024000 20203000 0 0 0 11857 1664 11549 222951;222952;222953;222954;222955;222956;222957;222958;222959;222960;222961;222962 136727 136727 1 LDAIMPAHVIYSDVDPR Unmodified 1910.956 0.95603328 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 39.74 38.106 3 0.0045088 18556 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 40.52 40.52 269870000 30884000 23430000 26543000 0 0 0 16716000 22714000 0 0 0 0 21902000 21100000 21544000 0 0 0 30085000 28602000 26350000 0 0 0 11858 1794 11550 222963;222964;222965;222966;222967;222968;222969;222970;222971;222972;222973 136728;136729;136730;136731;136732;136733;136734 136728 7 LDALLER Unmodified 828.47052 0.47051757 430 P0A8H6 yihI Der GTPase-activating protein YihI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.705 23.638 2 0.0013949 10428 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.77 49.384 495920000 95998000 76046000 76532000 0 0 0 32124000 31095000 29743000 1119100 0 0 25026000 20759000 18454000 0 0 0 30954000 28755000 29314000 0 0 0 11859 430 11551 222974;222975;222976;222977;222978;222979;222980;222981;222982;222983;222984;222985;222986 136735;136736;136737;136738;136739;136740;136741;136742;136743;136744 136739 10 LDALLIHSGELFNVFLDDHPYPFK Unmodified 2799.4272 0.42720278 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 54.659 53.206 3;4 4.7135E-16 26385 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 155.44 152.31 1251200000 147190000 143150000 129870000 0 0 0 131350000 116060000 115020000 0 0 0 27673000 68903000 78182000 0 0 0 102760000 103530000 87530000 0 0 0 11860 1170 11552 222987;222988;222989;222990;222991;222992;222993;222994;222995;222996;222997;222998;222999;223000;223001;223002;223003;223004;223005;223006;223007;223008;223009 136745;136746;136747;136748;136749;136750 136745 5 LDALSQQPR Unmodified 1026.5458 0.54580778 1147 P17994 yfaA Uncharacterized protein YfaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 19.685 20.163 2 9.278E-05 5728 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 125.25 110.03 8033700 0 0 0 4488300 3545400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11861 1147 11553 223010;223011;223012;223013 136751;136752;136753;136754 136754 4 LDALYEQSVVALR Unmodified 1475.7984 0.79839365 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.826 40.128 2 6.9725E-09 19850 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.55 139.66 355030000 33918000 29563000 24172000 0 0 0 21231000 30175000 25763000 0 0 0 28723000 24849000 24790000 0 0 0 37261000 40475000 34110000 0 0 0 11862 828 11554 223014;223015;223016;223017;223018;223019;223020;223021;223022;223023;223024;223025 136755;136756;136757;136758;136759;136760;136761;136762 136756 8 LDAPLIVVATQGGK Unmodified 1380.7977 0.79766537 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 42.321 40.622 2;3 3.9757E-08 20160 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 164.04 160.27 10899000000 868110000 798540000 815900000 541440 0 0 1110600000 1133400000 1048100000 0 0 0 828330000 785780000 847190000 0 0 0 859800000 889660000 912830000 0 0 0 11863 771 11555 223026;223027;223028;223029;223030;223031;223032;223033;223034;223035;223036;223037;223038;223039;223040;223041;223042;223043;223044;223045;223046;223047;223048;223049;223050 136763;136764;136765;136766;136767;136768;136769;136770;136771;136772;136773;136774;136775;136776;136777;136778;136779;136780;136781;136782;136783;136784;136785;136786;136787 136765 25 LDAQGIMAR Unmodified 973.5015 0.50150012 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.667 22.901 2 0.00014849 9536 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 131.06 109.76 376340000 44048000 40485000 37611000 0 0 0 25093000 27515000 24374000 0 0 1620500 30146000 29163000 28419000 0 0 0 27841000 30247000 29775000 0 0 0 11864 1550 11556 223051;223052;223053;223054;223055;223056;223057;223058;223059;223060;223061;223062;223063 136788;136789;136790;136791;136792;136793;136794 136794 7 LDATNIVDADVAVVTSIALDHTDWLGPDR Unmodified 3091.5462 0.5462083 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 55.849 54.424 3 0.15445 26728 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 32.675 30.268 28846000 0 4214700 5374300 0 0 0 0 0 0 0 0 0 2538800 3924200 0 0 0 0 4004600 5017900 3771800 0 0 0 11865 177 11557 223064;223065;223066;223067;223068;223069;223070 136795 136795 0 LDAVVFTGGIGENAAMVR Unmodified 1818.9298 0.92981853 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 4 2 2 2 1 1 47.356 45.851 2;3 1.0743E-17 22248 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 225.33 219.61 1590400000 0 0 0 0 0 0 331810000 301640000 253340000 0 0 2063300 239680000 224090000 216040000 0 0 0 9664100 7238600 4816700 0 0 0 11866 224 11558 223071;223072;223073;223074;223075;223076;223077;223078;223079;223080;223081;223082;223083;223084;223085;223086;223087;223088;223089;223090 136796;136797;136798;136799;136800;136801;136802;136803;136804;136805;136806;136807;136808;136809;136810;136811 136800 15 LDCVILALVK Unmodified 1142.6733 0.67331648 741 P0ACQ4 oxyR Hydrogen peroxide-inducible genes activator yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 49.21 47.871 2 0.00033618 23197 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.71 103.97 66706000 10857000 12393000 11533000 0 0 0 3350700 0 5923800 0 0 0 4154000 3676100 2966800 0 0 0 3252500 4582800 4016800 0 0 0 11867 741 11559 223091;223092;223093;223094;223095;223096;223097;223098;223099;223100;223101 136812;136813;136814;136815 136815 4 LDDDRIKDDDVR Unmodified 1473.7059 0.70594983 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 3 2 3 3 3 1 1 3 3 3 12.708 13.14 2;3;4 1.0899E-07 3193 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 191.52 178.16 258890000 0 0 0 4686200 13919000 11013000 0 0 0 61346000 55328000 52338000 0 0 0 0 2332600 1964700 0 0 0 20693000 17135000 18133000 11868 122 11560 223102;223103;223104;223105;223106;223107;223108;223109;223110;223111;223112;223113;223114;223115;223116;223117;223118;223119;223120;223121;223122;223123;223124;223125;223126;223127 136816;136817;136818;136819;136820;136821;136822;136823;136824;136825 136817 10 LDDGTTAESTR Unmodified 1164.5259 0.5258602 871 P0AEM0 fkpB FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.42 12.253 2 2.4698E-10 3078 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 190.24 180.84 647140000 50650000 47803000 53714000 0 0 0 47750000 51691000 48327000 0 0 0 53213000 54531000 46740000 0 0 0 59960000 62623000 70143000 0 0 0 11869 871 11561 223128;223129;223130;223131;223132;223133;223134;223135;223136;223137;223138;223139 136826;136827;136828;136829;136830;136831;136832;136833;136834;136835;136836;136837 136835 12 LDDIAAWTYR Unmodified 1222.5982 0.59823728 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.623 37.937 2 4.5836E-07 18693 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 175.51 175.51 791800000 30592000 26204000 19555000 2459300 2397400 2400700 73688000 64505000 63621000 6131400 4326000 6001900 63988000 55631000 66120000 0 1623900 1159900 96652000 101960000 91340000 4138000 3303700 4002600 11870 1427 11562 223140;223141;223142;223143;223144;223145;223146;223147;223148;223149;223150;223151;223152;223153;223154;223155;223156;223157;223158;223159;223160;223161;223162 136838;136839;136840;136841;136842;136843;136844;136845;136846;136847;136848;136849;136850;136851;136852;136853;136854;136855;136856;136857 136844 17 LDDIQPAK Unmodified 898.476 0.47599688 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.868 14.466 2 0.0009293 4301 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.16 69.311 431960000 21435000 17227000 12825000 6015900 7041000 7035000 39666000 31242000 35501000 10024000 8924500 10447000 28664000 29003000 26061000 1751300 2191300 1757500 39544000 38089000 42284000 5737400 4509500 4985800 11871 819 11563 223163;223164;223165;223166;223167;223168;223169;223170;223171;223172;223173;223174;223175;223176;223177;223178;223179;223180;223181;223182;223183;223184;223185;223186 136858;136859;136860;136861;136862;136863;136864;136865;136866;136867;136868;136869;136870;136871 136869 14 LDDLFIDGLVHVSSLDNDYYR Unmodified 2468.186 0.18596945 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 54.289 53.07 3 0.017676 26254 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 47.392 44.63 69892000 23194000 18607000 18432000 0 0 0 3248000 0 3547300 0 0 0 0 0 0 0 0 2864100 0 0 0 0 0 0 11872 1181 11564 223187;223188;223189;223190;223191;223192 136872;136873;136874 136873 0 LDDLSTGAR Unmodified 946.47197 0.47197413 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 14.672 15.383 2 1.7675E-05 5146 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 157.34 125.23 156930000 0 0 0 0 0 0 37914000 38733000 39256000 0 0 0 0 0 0 0 0 0 15235000 13894000 11901000 0 0 0 11873 600 11565 223193;223194;223195;223196;223197;223198 136875;136876;136877 136875 2 LDDNAVWTGWR Unmodified 1331.6258 0.62584901 1767 P75745 ybgK Uncharacterized protein YbgK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.839 40.141 2 2.7316E-10 19712 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 188.87 168.54 178040000 24841000 22471000 28282000 0 0 0 16583000 14512000 14812000 0 0 0 8704500 7729900 8339800 0 0 0 11649000 10138000 9979900 0 0 0 11874 1767 11566 223199;223200;223201;223202;223203;223204;223205;223206;223207;223208;223209;223210 136878;136879;136880;136881;136882;136883;136884;136885;136886;136887;136888 136883 11 LDDNTIEISVTPNR Unmodified 1585.7948 0.79476484 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 1 2 2 2 1 34.504 32.934 2;3 9.1775E-15 15942 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 231.92 196.41 2167100000 187590000 183890000 151030000 0 0 0 168300000 169880000 155060000 0 0 1317000 185930000 174210000 153750000 0 0 0 216420000 200060000 218670000 1042900 0 0 11875 161 11567 223211;223212;223213;223214;223215;223216;223217;223218;223219;223220;223221;223222;223223;223224;223225;223226;223227;223228;223229;223230 136889;136890;136891;136892;136893;136894;136895;136896;136897;136898;136899;136900;136901;136902 136890 14 LDDPTGYGR Unmodified 992.45632 0.45632407 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.624 17.381 2 6.0871E-06 5917 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 172.14 167.79 684410000 48931000 46453000 43740000 0 0 0 60882000 65708000 60176000 0 0 0 53557000 56258000 47065000 0 0 0 70327000 65040000 66270000 0 0 0 11876 720 11568 223231;223232;223233;223234;223235;223236;223237;223238;223239;223240;223241;223242 136903;136904;136905;136906;136907;136908;136909;136910;136911 136911 7 LDDTSSEFNTQR Unmodified 1411.6216 0.6215515 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.24 18.616 2 1.1233E-23 5674 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 242.83 239.26 988090000 52430000 51331000 46743000 18741000 21384000 18711000 73989000 68787000 74179000 15055000 13962000 14313000 63726000 48505000 46919000 3791300 4821500 2751500 172000000 0 113070000 23596000 21112000 18178000 11877 698 11569 223243;223244;223245;223246;223247;223248;223249;223250;223251;223252;223253;223254;223255;223256;223257;223258;223259;223260;223261;223262;223263;223264;223265 136912;136913;136914;136915;136916;136917;136918;136919;136920;136921;136922;136923;136924;136925;136926;136927;136928;136929;136930;136931;136932;136933 136915 22 LDDVVALIK Unmodified 984.58555 0.58554733 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.358 37.624 2 0.00031699 18759 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.37 45.075 580820000 44531000 49703000 49065000 944410 1657600 1324300 36759000 42301000 41154000 1872700 2492100 2318800 43064000 37711000 35337000 0 0 782080 67856000 60004000 59866000 0 0 2079000 11878 1221 11570 223266;223267;223268;223269;223270;223271;223272;223273;223274;223275;223276;223277;223278;223279;223280;223281;223282;223283;223284;223285 136934;136935;136936;136937;136938;136939;136940;136941;136942 136934 9 LDDVYGDR Unmodified 951.42977 0.42977497 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.183 17.019 2 0.0015802 5927 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.66 75.194 228130000 20295000 15229000 17014000 913040 0 885730 23371000 23522000 24089000 0 0 0 14701000 15607000 12327000 0 0 0 18470000 18873000 22837000 0 0 0 11879 1409 11571 223286;223287;223288;223289;223290;223291;223292;223293;223294;223295;223296;223297;223298;223299 136943;136944;136945 136945 3 LDEAEASAR Unmodified 960.45124 0.45123869 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 1 1 2 2 2 1 1 1 11.64 12.366 2 0.00078717 3295 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.25 75.144 1906100000 288590000 269790000 247380000 2420000 2747300 1473200 27903000 28420000 108790000 5740000 6046400 5005500 168600000 29438000 24458000 0 0 0 228420000 221000000 219870000 6111100 7673400 6183800 11880 143 11572 223300;223301;223302;223303;223304;223305;223306;223307;223308;223309;223310;223311;223312;223313;223314;223315;223316;223317;223318;223319;223320;223321;223322;223323;223324;223325;223326;223327;223328;223329;223330 136946;136947;136948;136949;136950;136951;136952 136948 3 LDEAGVR Unmodified 758.39227 0.39226725 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 1 2 2 1 2 2 2 1 1 11.928 12.764 1;2 0.00015517 3300 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.88 53.563 3117600000 723670000 80283000 611060000 0 0 0 7250400 40194000 247710000 0 0 0 43691000 260930000 255520000 0 0 0 676500000 86218000 84592000 0 0 0 11881 1013 11573 223331;223332;223333;223334;223335;223336;223337;223338;223339;223340;223341;223342;223343;223344;223345;223346;223347;223348;223349 136953;136954;136955;136956;136957;136958;136959 136959 5 LDEALWAR Unmodified 972.50288 0.50288033 1325 P28905 holC DNA polymerase III subunit chi yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.576 30.219 2 1.6766E-05 14117 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 177.65 83.244 126340000 14308000 13408000 14737000 0 0 0 12689000 11671000 10633000 0 0 0 7762000 6647000 5400400 0 0 0 9586500 10021000 9473800 0 0 0 11882 1325 11574 223350;223351;223352;223353;223354;223355;223356;223357;223358;223359;223360;223361 136960;136961;136962;136963;136964;136965;136966;136967 136962 8 LDEAMAR Unmodified 804.37999 0.379988 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.634 13.475 2 0.0015084 3788 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 128.75 110.99 525360000 57979000 46377000 51088000 0 0 0 52962000 53440000 55605000 0 0 0 28317000 29721000 34903000 0 0 0 43625000 38144000 33195000 0 0 0 11883 956 11575 223362;223363;223364;223365;223366;223367;223368;223369;223370;223371;223372;223373 136968;136969;136970;136971;136972;136973;136974 136972 7 LDEAQEAAR Unmodified 1001.4778 0.47778779 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 11.298 12.167 2 2.9156E-05 3193 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.54 118.76 69385000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26615000 23535000 19234000 0 0 0 11884 1197 11576 223374;223375;223376;223377 136975;136976;136977;136978 136975 4 LDEDEQYR Unmodified 1066.4567 0.456718 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 12.804 13.652 2 0.0006403 4077 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.4 118.33 43911000 0 0 0 0 0 0 0 0 0 0 0 1626600 6104700 5417000 3362800 0 0 0 9012000 8270500 10118000 0 0 0 11885 477 11577 223378;223379;223380;223381;223382;223383;223384 136979;136980 136979 2 LDEFETVGNTIR Unmodified 1392.6885 0.68850885 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 33.816 32.089 2;3 6.3535E-17 15557 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 213.31 207.75 3018000000 237220000 243020000 234690000 26157000 23131000 22253000 220480000 219210000 217160000 131020000 115940000 111470000 136060000 135490000 130550000 0 0 0 237480000 231800000 231400000 40036000 36689000 36743000 11886 502 11578 223385;223386;223387;223388;223389;223390;223391;223392;223393;223394;223395;223396;223397;223398;223399;223400;223401;223402;223403;223404;223405;223406;223407;223408;223409;223410;223411;223412;223413;223414;223415;223416;223417;223418;223419 136981;136982;136983;136984;136985;136986;136987;136988;136989;136990;136991;136992;136993;136994;136995;136996;136997;136998;136999;137000;137001;137002;137003 136988 23 LDEGCTER Unmodified 978.40766 0.40765932 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.947 11.504 2 0.0013173 2312 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 109.86 104.2 713730000 10218000 8357800 7515700 0 0 0 114160000 111230000 113150000 8986800 8661000 8780600 68844000 71340000 65079000 1928100 2492100 1510000 39699000 35231000 36545000 0 0 0 11887 25 11579 223420;223421;223422;223423;223424;223425;223426;223427;223428;223429;223430;223431;223432;223433;223434;223435;223436;223437 137004;137005;137006;137007 137007 4 LDEGCTERDDVNFLK Unmodified 1809.8203 0.82032766 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 27.573 26.185 2;3 9.8029E-07 12131 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 126.12 117.11 599340000 2167600 3694700 0 0 0 2965400 67813000 58763000 64400000 72542000 61726000 60835000 38545000 34795000 32636000 0 11525000 0 18978000 16012000 22213000 14805000 14920000 0 11888 25 11580 223438;223439;223440;223441;223442;223443;223444;223445;223446;223447;223448;223449;223450;223451;223452;223453;223454;223455;223456;223457;223458;223459;223460;223461;223462;223463;223464;223465;223466;223467;223468 137008;137009;137010;137011;137012;137013;137014;137015;137016;137017;137018;137019;137020;137021;137022;137023;137024;137025;137026 137020 19 LDEGMSFSEATTLAR Unmodified 1626.7559 0.75593649 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 38.896 37.266 2 1.0266E-05 18096 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 120.55 107.97 170360000 30794000 23478000 28227000 0 0 0 6469400 0 5145500 0 0 0 9202600 7602200 9473700 0 0 0 17350000 16853000 15767000 0 0 0 11889 34 11581 223469;223470;223471;223472;223473;223474;223475;223476;223477;223478;223479 137027;137028;137029;137030;137031;137032;137033 137027 1 LDEHQPVFMPVGAFCPPLEK Unmodified 2310.1177 0.11769565 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 1 2 2 1 1 1 48.359 47.038 2;3 0.00010066 21954 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 68.88 68.093 712890000 107440000 96060000 105400000 0 750970 0 59599000 54169000 63638000 0 0 0 41847000 41785000 37890000 0 0 0 33303000 35717000 35289000 0 0 0 11890 1341 11582 223480;223481;223482;223483;223484;223485;223486;223487;223488;223489;223490;223491;223492;223493;223494;223495;223496;223497;223498 137034;137035;137036;137037;137038;137039;137040;137041;137042;137043;137044;137045;137046 137045 12 LDELAHNALVK Unmodified 1221.6717 0.67173657 1972 Q47146 fadE Acyl-coenzyme A dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 20.582 21.011 3 0.023717 6146 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 45.908 34.376 37153000 7630400 7865300 5812700 3073800 2422900 4217800 0 0 0 0 0 0 0 0 0 0 0 0 6130300 0 0 0 0 0 11891 1972 11583 223499;223500;223501;223502;223503;223504;223505 137047;137048 137047 2 LDELDLIVVDHPQVK Unmodified 1731.9407 0.94070079 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 42.157 40.445 2;3 1.1043E-06 20045 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 109.84 100.79 611830000 41770000 41962000 36945000 0 0 0 79805000 77260000 73828000 0 0 0 47185000 48486000 5215600 0 0 0 51652000 52510000 55209000 0 0 0 11892 1510 11584 223506;223507;223508;223509;223510;223511;223512;223513;223514;223515;223516;223517;223518;223519;223520;223521;223522;223523;223524;223525;223526;223527;223528 137049;137050;137051;137052;137053;137054;137055;137056;137057;137058;137059;137060;137061;137062;137063 137053 15 LDELEGALHQAK Unmodified 1322.683 0.68302954 21 CON__Q7RTS7 no no 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 52.169 50.76 2 0.045223 20321 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 50.473 25.629 10604000 0 0 0 0 0 0 0 0 0 0 0 1334900 0 0 0 0 0 0 0 0 0 2002000 4542600 2724700 + 11893 21 11585 223529;223530;223531;223532 137064 137064 0 LDEPSSNK Unmodified 888.41888 0.41887593 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 10.521 11.39 2 0.0012043 2715 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.81 80.966 370910000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 133450000 109980000 127480000 0 0 0 11894 937 11586 223533;223534;223535 137065;137066;137067 137066 3 LDEQPGETNAR Unmodified 1228.5684 0.56839372 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.668 12.535 2 5.6319E-08 3363 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.33 99.268 369120000 38211000 30391000 30770000 888470 950970 0 32003000 28905000 28664000 0 0 0 25124000 31886000 20631000 0 0 0 33437000 39316000 27943000 0 0 0 11895 1586 11587 223536;223537;223538;223539;223540;223541;223542;223543;223544;223545;223546;223547;223548;223549 137068;137069;137070;137071;137072;137073;137074;137075;137076;137077 137073 10 LDESGIVYIGAEVTGGDILVGK Unmodified 2204.1576 0.15762944 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 4 2 1 2 2 2 5 7 5 4 2 4 3 6 7 6 5 2 3 4 4 4 55.984 54.85 2;3 1.0058E-21 21428 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 222.88 220.39 13286000000 21155000 45374000 43387000 16514000 5358100 13219000 24391000 28942000 24681000 1336900000 1039600000 1020800000 58506000 67340000 73765000 1785000000 2082600000 1841600000 60721000 64080000 55508000 1116900000 1218100000 1241200000 11896 463 11588 223550;223551;223552;223553;223554;223555;223556;223557;223558;223559;223560;223561;223562;223563;223564;223565;223566;223567;223568;223569;223570;223571;223572;223573;223574;223575;223576;223577;223578;223579;223580;223581;223582;223583;223584;223585;223586;223587;223588;223589;223590;223591;223592;223593;223594;223595;223596;223597;223598;223599;223600;223601;223602;223603;223604;223605;223606;223607;223608;223609;223610;223611;223612;223613;223614;223615;223616;223617;223618;223619;223620;223621;223622;223623;223624;223625;223626;223627;223628;223629;223630;223631;223632;223633;223634;223635;223636;223637;223638 137078;137079;137080;137081;137082;137083;137084;137085;137086;137087;137088;137089;137090;137091;137092;137093;137094;137095;137096;137097;137098;137099;137100;137101;137102;137103;137104;137105;137106;137107;137108;137109;137110;137111;137112;137113;137114;137115;137116 137079 39 LDEVIALLPGAER Unmodified 1394.7769 0.77692993 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 1 47.86 46.452 2 5.5467E-05 22683 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 89.171 80.213 74537000 10857000 14920000 9281000 0 0 0 5819500 7232800 5294000 0 0 0 3505700 3320400 2996000 0 0 0 5966000 0 5344700 0 0 0 11897 1632 11589 223639;223640;223641;223642;223643;223644;223645;223646;223647;223648;223649;223650 137117;137118 137118 0 LDEVMEGK Unmodified 919.43208 0.43208315 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.334 15.94 2 0.015232 5116 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 70.525 9.843 267200000 14403000 14904000 14249000 0 267950 229640 34369000 32459000 32230000 6050200 3673200 3991500 30225000 0 0 0 0 0 30541000 25389000 21343000 1399200 0 1475800 11898 345 11590 223651;223652;223653;223654;223655;223656;223657;223658;223659;223660;223661;223662;223663;223664;223665;223666;223667 137119 137119 1 LDEVYALYADPDADFDK Unmodified 1958.8786 0.87855405 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.035 47.687 2 1.9066E-10 23417 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.1 169.09 263970000 26644000 23432000 23595000 0 0 0 17175000 20158000 18014000 0 0 0 22127000 16496000 17077000 0 0 0 26553000 28184000 24514000 0 0 0 11899 561 11591 223668;223669;223670;223671;223672;223673;223674;223675;223676;223677;223678;223679 137120;137121;137122;137123;137124;137125;137126;137127;137128;137129;137130;137131 137126 12 LDEVYALYADPDADFDKLAAEQGR Unmodified 2684.2606 0.26059096 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.809 48.585 3 3.498E-15 23506 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 142.42 141.64 342070000 30750000 35967000 32671000 3647600 0 0 21693000 24337000 24493000 0 0 0 20709000 20319000 22338000 0 629850 629790 30568000 31499000 35544000 0 3264400 3009800 11900 561 11592 223680;223681;223682;223683;223684;223685;223686;223687;223688;223689;223690;223691;223692;223693;223694;223695;223696 137132;137133;137134;137135;137136;137137;137138;137139;137140;137141;137142;137143 137137 12 LDFCNLDVNDTAAFSR Unmodified 1856.8363 0.83631208 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 1 2 2 46.784 45.432 2;3 1.6868E-18 22140 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 235.21 226.8 1125300000 126060000 103280000 99571000 0 0 0 12722000 115910000 16028000 0 0 0 116920000 92563000 91791000 0 0 0 113950000 118260000 118200000 0 0 0 11901 702 11593 223697;223698;223699;223700;223701;223702;223703;223704;223705;223706;223707;223708;223709;223710;223711;223712;223713;223714;223715;223716;223717 137144;137145;137146;137147;137148;137149;137150;137151;137152;137153 137146 8 LDFEEGFEGVDPQPLHER Unmodified 2112.9752 0.9752484 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 2 2 1 2 1 2 2 2 1 2 2 2 1 1 1 41.625 39.839 2;3 2.0893E-36 19433 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 273.74 268.59 1742600000 147180000 144500000 103550000 0 0 0 131930000 120890000 107310000 19457000 18558000 15284000 133640000 130320000 125670000 3800300 0 0 170820000 189280000 159840000 7079300 6373800 7081600 11902 1880 11594 223718;223719;223720;223721;223722;223723;223724;223725;223726;223727;223728;223729;223730;223731;223732;223733;223734;223735;223736;223737;223738;223739;223740;223741;223742;223743;223744;223745;223746;223747;223748 137154;137155;137156;137157;137158;137159;137160;137161;137162;137163;137164;137165;137166;137167;137168;137169;137170;137171;137172;137173;137174 137166 20 LDFFDDEIDSLR Unmodified 1483.6831 0.68308912 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.401 51.953 2 6.3535E-17 25546 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 213.31 209.01 154560000 21204000 18342000 19154000 0 0 0 10676000 10916000 10328000 0 0 0 0 10604000 7995000 0 0 0 13003000 16091000 16248000 0 0 0 11903 1355 11595 223749;223750;223751;223752;223753;223754;223755;223756;223757;223758;223759;223760 137175;137176;137177;137178;137179;137180;137181;137182;137183;137184 137181 9 LDFMMQEFNR Unmodified 1329.5846 0.58457783 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.513 42.998 2 0.0063872 21005 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 67.563 62.598 47545000 5476900 4937200 5419600 0 0 0 2595800 5183800 3359700 0 0 0 3659500 2323300 2842300 0 0 0 3362600 4436600 3948000 0 0 0 11904 1215 11596 223761;223762;223763;223764;223765;223766;223767;223768;223769;223770;223771;223772 137185;137186;137187 137185 0 LDFNVVK Unmodified 833.4647 0.46470391 1288 P27126 rfaS Lipopolysaccharide core biosynthesis protein RfaS yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.271 28.613 2 0.021819 13281 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 75.311 58.756 56832000 1848300 2602900 0 0 0 0 4870100 4918800 5331800 3243700 2926800 3559800 0 2438500 0 0 0 0 6490300 5856500 7371700 2029300 1905200 1438100 11905 1288 11597 223773;223774;223775;223776;223777;223778;223779;223780;223781;223782;223783;223784;223785;223786;223787 137188;137189;137190;137191 137191 4 LDFQGTESLNTLR Unmodified 1492.7522 0.75217174 695 P0AC30 ftsX Cell division protein FtsX yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.791 35.902 2 2.7866E-05 17406 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 105.46 90.317 38158000 0 0 0 1076500 1001600 1053000 0 0 0 1746900 2449300 1995900 3999800 3515700 6603000 0 0 0 4388200 7389500 0 0 1635900 1303200 11906 695 11598 223788;223789;223790;223791;223792;223793;223794;223795;223796;223797;223798;223799;223800 137192;137193 137193 1 LDGASLHFAPLEFPAVADFECTTALVEAAK Unmodified 3189.5693 0.56925192 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 3 2 3 1 1 1 2 2 3 3 2 1 55.256 53.766 3;4 2.0344E-31 25610 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 180.88 179.07 23931000000 635610000 574860000 568730000 0 5571500 0 3962300000 3400200000 3505800000 10921000 0 8862100 1942500000 1782700000 1807300000 0 0 0 1934700000 2008300000 1779300000 2820600 0 0 11907 1079 11599 223801;223802;223803;223804;223805;223806;223807;223808;223809;223810;223811;223812;223813;223814;223815;223816;223817;223818;223819;223820;223821;223822;223823;223824;223825;223826;223827;223828;223829;223830;223831 137194;137195;137196;137197;137198;137199;137200;137201;137202;137203;137204;137205;137206;137207;137208;137209;137210;137211;137212 137208 19 LDGIYLPGSPSNVQPHLYGENGDEPDADPGR Unmodified 3278.5116 0.5116137 1810 P76038 puuD Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 43.374 42.035 3 0.00055366 20372 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 60.348 58.145 35169000 13481000 12314000 9373700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11908 1810 11600 223832;223833;223834 137213 137213 1 LDGKPLLTGK Unmodified 1040.623 0.62299547 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.396 16.211 2 0.00015442 5473 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.46 79.203 812310000 183060000 178670000 167800000 220490 0 0 57588000 68120000 58849000 0 0 0 12343000 11136000 9537100 0 0 0 19642000 22337000 23000000 0 0 0 11909 703 11601 223835;223836;223837;223838;223839;223840;223841;223842;223843;223844;223845;223846;223847 137214;137215;137216;137217;137218;137219;137220;137221 137218 8 LDGLAEHGIIHLINSGSAALDGSCK Unmodified 2547.2751 0.27513559 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.787 41.137 4 6.9974E-05 19975 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.177 77.995 157070000 18072000 17735000 22030000 0 0 0 15205000 11595000 10470000 0 0 0 10001000 8802200 11760000 0 0 0 11443000 11049000 8911800 0 0 0 11910 1758 11602 223848;223849;223850;223851;223852;223853;223854;223855;223856;223857;223858;223859 137222;137223 137223 2 LDGLSDAFSVFR Unmodified 1325.6616 0.66156582 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.552 51.371 2 3.5846E-23 24069 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 230.24 225.27 1404200000 106310000 112600000 90058000 17962000 20516000 19745000 59794000 56412000 57846000 20175000 19588000 20990000 65464000 67399000 75589000 0 7244000 8644900 175870000 158790000 163100000 27490000 26288000 26306000 11911 150 11603 223860;223861;223862;223863;223864;223865;223866;223867;223868;223869;223870;223871;223872;223873;223874;223875;223876;223877;223878;223879;223880;223881;223882 137224;137225;137226;137227;137228;137229;137230;137231;137232;137233;137234;137235;137236;137237;137238;137239;137240;137241;137242;137243;137244 137243 21 LDGPVTGNGK Unmodified 956.49271 0.49270958 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 12.667 13.299 2 6.2068E-09 2981 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 190.51 152.27 14472000000 79423000 87869000 87965000 2635000000 2495000000 2455000000 138960000 120300000 129470000 160670000 129810000 140550000 61953000 62393000 62448000 52560000 40439000 43996000 114970000 122950000 116920000 1738100000 1716900000 1678800000 11912 939 11604 223883;223884;223885;223886;223887;223888;223889;223890;223891;223892;223893;223894;223895;223896;223897;223898;223899;223900;223901;223902;223903;223904;223905;223906;223907;223908;223909 137245;137246;137247;137248;137249;137250;137251;137252;137253;137254;137255;137256;137257;137258;137259;137260;137261;137262;137263;137264;137265;137266;137267;137268 137254 23 LDGRPVMIIGHQK Unmodified 1462.8079 0.8078529 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 2 2 2 17.828 18.281 2;3 2.5717E-05 6690 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 72.681 65.226 1245300000 73087000 109560000 83389000 5472000 5143900 4875200 94744000 99799000 112810000 10496000 11670000 9673400 76737000 87676000 85883000 7364100 5841300 4236700 96730000 101390000 99092000 22080000 20011000 17517000 11913 651 11605 223910;223911;223912;223913;223914;223915;223916;223917;223918;223919;223920;223921;223922;223923;223924;223925;223926;223927;223928;223929;223930;223931;223932;223933;223934;223935;223936;223937;223938;223939;223940 137269;137270;137271;137272;137273;137274;137275;137276;137277;137278;137279;137280;137281;137282;137283;137284;137285;137286;137287;137288;137289;137290 137278 22 LDGTQFQLK Unmodified 1048.5553 0.55530983 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.634 26.444 2 0.00019484 8837 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 127.02 104.53 743040000 46248000 47367000 44388000 13601000 13924000 13974000 40841000 39572000 40784000 36662000 24905000 28027000 26568000 34221000 25953000 8697700 5617200 6090000 63176000 65268000 57117000 23146000 17062000 19831000 11914 252 11606 223941;223942;223943;223944;223945;223946;223947;223948;223949;223950;223951;223952;223953;223954;223955;223956;223957;223958;223959;223960;223961;223962;223963;223964 137291;137292;137293;137294;137295;137296;137297;137298;137299;137300;137301;137302;137303;137304;137305;137306;137307;137308;137309 137305 14 LDGVIPGWTEGLK Unmodified 1383.7398 0.73981614 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.998 44.586 2 6.4361E-06 20694 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 125.74 122.88 7514400000 468650000 501740000 457940000 3009600 0 0 598740000 625220000 631430000 3153600 2746400 0 645370000 654520000 647500000 2508500 1748500 1172700 736930000 758000000 757560000 6413600 5377500 4652600 11915 1572 11607 223965;223966;223967;223968;223969;223970;223971;223972;223973;223974;223975;223976;223977;223978;223979;223980;223981;223982;223983;223984;223985;223986 137310;137311;137312;137313;137314;137315;137316;137317;137318;137319;137320;137321;137322;137323;137324 137324 14 LDGYQYR Unmodified 913.42938 0.42938104 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 0 By MS/MS By matching 1 1 16.742 16.622 2 0.0078297 4850 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 89.673 74.452 10641000 0 0 0 0 0 0 0 0 0 4348000 6293400 0 0 0 0 0 0 0 0 0 0 0 0 0 11916 1447 11608 223987;223988 137325 137325 1 LDHEPSAEEIAEQLDKPVDDVSR Unmodified 2591.2351 0.23510449 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 2 2 2 2 2 2 1 1 3 3 3 2 2 2 2 1 1 37.613 36.12 2;3;4 2.1228E-36 17704 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 224.1 223.26 4790600000 44192000 30452000 13982000 724650 559450 0 193430000 188070000 184350000 46372000 40127000 34984000 44366000 30710000 129340000 1420800000 1099700000 1074400000 72716000 66828000 67127000 3610300 0 3736900 11917 1089 11609 223989;223990;223991;223992;223993;223994;223995;223996;223997;223998;223999;224000;224001;224002;224003;224004;224005;224006;224007;224008;224009;224010;224011;224012;224013;224014;224015;224016;224017;224018;224019;224020;224021;224022;224023;224024;224025;224026;224027 137326;137327;137328;137329;137330;137331;137332;137333;137334;137335;137336;137337;137338;137339;137340;137341;137342;137343;137344;137345;137346;137347;137348;137349;137350;137351;137352;137353;137354;137355;137356;137357;137358;137359;137360 137348 35 LDHFAAHGCK Unmodified 1154.5291 0.52911186 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.721 11.495 2 0.027542 2699 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 58.23 49.999 43299000 6728100 7481500 5366000 0 0 0 1800800 4343300 3765700 0 0 0 0 0 0 0 0 0 3699400 3450800 6663700 0 0 0 11918 427 11610 224028;224029;224030;224031;224032;224033;224034;224035;224036 137361 137361 1 LDHQAPEEMR Unmodified 1224.5557 0.55572054 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 11.887 12.694 2;3 2.8017E-07 3484 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 202.2 175.41 1891200000 205270000 183680000 183510000 0 0 0 166270000 167420000 158470000 0 0 351000 133430000 101430000 111530000 0 0 0 169170000 171830000 138820000 0 0 0 11919 1170 11611 224037;224038;224039;224040;224041;224042;224043;224044;224045;224046;224047;224048;224049;224050;224051;224052;224053;224054;224055;224056;224057;224058;224059;224060;224061 137362;137363;137364;137365;137366;137367;137368;137369;137370;137371;137372;137373;137374;137375;137376;137377;137378;137379;137380;137381;137382;137383;137384 137371 23 LDHWPDTVK Unmodified 1109.5506 0.55055881 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 19.166 19.716 2;3 0.00098547 7523 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.635 90.811 238910000 19996000 8016100 6930200 0 0 0 27446000 24447000 24129000 0 0 0 17791000 19930000 16556000 0 0 0 21915000 23458000 28299000 0 0 0 11920 170 11612 224062;224063;224064;224065;224066;224067;224068;224069;224070;224071;224072;224073;224074;224075;224076;224077;224078;224079;224080;224081;224082;224083 137385;137386;137387;137388;137389;137390;137391;137392;137393;137394;137395;137396;137397;137398;137399 137392 15 LDIATGETVEFAEVLMIANGEEVK Unmodified 2577.2884 0.28838562 985 P0AG48 rplU 50S ribosomal protein L21 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 2 1 2 1 2 2 2 2 2 2 2 1 2 1 2 2 2 1 1 2 55.707 54.259 2;3 2.8729E-84 26910 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 313.51 308.17 804980000 115450000 117240000 50860000 14643000 3291600 12425000 27398000 23543000 26220000 13386000 18247000 22120000 25271000 50888000 17738000 0 0 0 77174000 69511000 87249000 4734400 11091000 16498000 11921 985 11613 224084;224085;224086;224087;224088;224089;224090;224091;224092;224093;224094;224095;224096;224097;224098;224099;224100;224101;224102;224103;224104;224105;224106;224107;224108;224109;224110;224111;224112;224113;224114;224115;224116;224117;224118;224119 137400;137401;137402;137403;137404 137403 5 LDIIAWPGYIER Unmodified 1444.7715 0.77145062 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.647 51.355 2 2.2364E-05 25112 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.24 117.3 707870000 208730000 206920000 200680000 0 0 0 12391000 14881000 13771000 0 0 0 7886100 6491300 8183800 0 0 0 8929400 10365000 8633900 0 0 0 11922 1816 11614 224120;224121;224122;224123;224124;224125;224126;224127;224128;224129;224130;224131 137405;137406;137407;137408;137409;137410 137409 6 LDINEFR Unmodified 905.46068 0.46068117 1190 P21893 recJ Single-stranded-DNA-specific exonuclease RecJ yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.195 29.87 2 0.006056 13503 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.068 53.944 79210000 9239300 5883200 7026500 0 0 0 6541800 6498700 0 0 0 0 5962700 6183500 4377100 0 0 0 9667500 8865900 8964300 0 0 0 11923 1190 11615 224132;224133;224134;224135;224136;224137;224138;224139;224140;224141;224142 137411;137412;137413 137412 2 LDINIDEEVHR Unmodified 1351.6732 0.67319314 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 2 1 1 2 1 2 1 2 2 2 1 28.333 27.011 2;3 1.4461E-19 12484 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 227.99 195.67 1810900000 146330000 138860000 110670000 1481500 361890 0 129760000 121050000 129730000 5799300 4053900 3364200 144560000 135270000 166490000 0 1667400 0 200120000 205030000 160080000 0 0 6237800 11924 651 11616 224143;224144;224145;224146;224147;224148;224149;224150;224151;224152;224153;224154;224155;224156;224157;224158;224159;224160;224161;224162;224163;224164;224165;224166;224167;224168;224169;224170 137414;137415;137416;137417;137418;137419;137420;137421;137422;137423;137424;137425;137426;137427;137428;137429;137430;137431;137432 137418 19 LDITESTVK Unmodified 1004.539 0.53899107 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 21.039 21.574 2 0.00069751 8628 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 103.56 64.757 99962000 22821000 29424000 27318000 0 0 0 0 0 0 0 0 0 7223200 6342800 6833900 0 0 0 0 0 0 0 0 0 11925 908 11617 224171;224172;224173;224174;224175;224176 137433;137434 137433 2 LDKDELGEIAK Unmodified 1229.6503 0.65033243 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 21.354 21.702 2;3 3.0397E-11 8528 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 234.67 188.28 2203400000 352720000 413280000 351660000 0 0 0 265360000 231780000 249820000 0 0 0 44622000 41682000 39290000 0 0 0 68092000 70479000 74667000 0 0 0 11926 1960 11618 224177;224178;224179;224180;224181;224182;224183;224184;224185;224186;224187;224188;224189;224190;224191;224192;224193;224194;224195;224196;224197;224198;224199;224200 137435;137436;137437;137438;137439;137440;137441;137442;137443;137444;137445;137446;137447;137448;137449;137450;137451;137452;137453;137454;137455;137456;137457;137458 137452 24 LDKDQLIAGVQDAFADK Unmodified 1845.9472 0.94724273 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 43.966 42.335 2;3 6.6379E-24 20529 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 248.68 240.92 5823300000 303400000 286510000 303150000 0 0 0 743430000 685900000 671390000 2533400 3129300 0 365700000 390470000 439160000 0 0 0 547500000 540980000 531090000 4472000 4541200 0 11927 1572 11619 224201;224202;224203;224204;224205;224206;224207;224208;224209;224210;224211;224212;224213;224214;224215;224216;224217;224218;224219;224220;224221;224222;224223;224224;224225;224226;224227;224228 137459;137460;137461;137462;137463;137464;137465;137466;137467;137468;137469;137470;137471;137472;137473;137474;137475;137476;137477;137478;137479;137480;137481;137482 137475 24 LDKDTTGLMVVAK Unmodified 1389.7538 0.75375164 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 24.393 23.533 2;3 4.3648E-06 10287 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.63 131.06 339710000 60419000 57996000 43623000 0 0 0 14002000 22453000 17302000 0 0 0 16587000 12375000 15415000 0 0 0 26754000 26940000 25841000 0 0 0 11928 1429 11620 224229;224230;224231;224232;224233;224234;224235;224236;224237;224238;224239;224240;224241;224242;224243;224244;224245;224246;224247;224248;224249 137483;137484;137485;137486;137487;137488 137485 6 LDKGGLPGCVEVCPAGAVIFGTR Unmodified 2372.1981 0.19807124 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 44.792 42.984 3 1.8527E-06 17545 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 93.633 93.633 39379000 0 0 0 0 0 0 2226400 0 0 10468000 10595000 10232000 0 0 0 0 3767800 0 0 0 0 2089800 0 0 11929 600 11621 224250;224251;224252;224253;224254;224255 137489;137490 137489 2 LDKNDAAVLLVDHQAGLLSLVR Unmodified 2359.3223 0.32234378 1179 P21367 ycaC Uncharacterized protein YcaC yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 3 1 2 1 1 1 2 2 2 1 2 1 1 2 2 1 1 1 2 2 2 2 1 2 48.885 47.6 3;4 3.1503E-10 23677 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.47 117.87 2785200000 716410000 267420000 737310000 2044600 1759000 1702800 226260000 200170000 203650000 18710000 31422000 20083000 20385000 45285000 45277000 2809000 3646100 4631700 77265000 69151000 70078000 8206900 5063600 6412800 11930 1179 11622 224256;224257;224258;224259;224260;224261;224262;224263;224264;224265;224266;224267;224268;224269;224270;224271;224272;224273;224274;224275;224276;224277;224278;224279;224280;224281;224282;224283;224284;224285;224286;224287;224288;224289;224290;224291;224292;224293 137491;137492;137493;137494;137495;137496;137497;137498;137499;137500;137501;137502;137503;137504;137505;137506;137507 137497 17 LDKPLLEAAR Unmodified 1124.6554 0.65535823 949 P0AFK4 potB Spermidine/putrescine transport system permease protein PotB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.556 19.029 3 0.00027459 7100 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 81.017 71.682 101390000 3977600 3922100 3746600 678620 603820 744410 7659300 6414100 7879500 2446200 2227700 2501200 7005100 9059100 7479700 0 0 0 10278000 13012000 11750000 0 0 0 11931 949 11623 224294;224295;224296;224297;224298;224299;224300;224301;224302;224303;224304;224305;224306;224307;224308;224309;224310;224311 137508;137509;137510;137511 137511 3 LDKPVMLGGPLAEDR Unmodified 1609.8498 0.84977729 467 P0A8W5 yqgE UPF0301 protein YqgE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 31.757 30.394 2;3 3.463E-08 14350 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.42 120.99 699510000 95639000 87698000 80912000 0 0 1094000 41971000 42573000 43139000 6204100 5338400 3876100 41933000 33268000 41485000 1915000 1627500 1988400 55657000 56798000 50904000 2140700 1285000 2065400 11932 467 11624 224312;224313;224314;224315;224316;224317;224318;224319;224320;224321;224322;224323;224324;224325;224326;224327;224328;224329;224330;224331;224332;224333;224334;224335;224336;224337;224338;224339;224340;224341;224342;224343;224344;224345 137512;137513;137514;137515;137516;137517;137518;137519;137520;137521;137522;137523;137524;137525;137526;137527;137528;137529;137530;137531 137523 19 LDKVTGETGEAIDDLR Unmodified 1730.8687 0.86865806 418 P0A8C4 ygfB UPF0149 protein YgfB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.056 24.946 3 0.00013841 9045 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 70.783 59.996 271270000 16242000 16084000 13119000 5182100 3999900 4610200 16304000 15604000 17084000 12661000 14484000 13630000 10296000 11159000 12142000 7451800 4860300 5393400 18013000 18875000 15913000 6164100 6309800 5686800 11933 418 11625 224346;224347;224348;224349;224350;224351;224352;224353;224354;224355;224356;224357;224358;224359;224360;224361;224362;224363;224364;224365;224366;224367;224368;224369 137532;137533 137532 2 LDLALLVDGLQAER Unmodified 1524.8512 0.8511575 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 54.866 53.405 2;3 9.5046E-11 26236 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 191.33 184.8 1974300000 115440000 135670000 119630000 2140900 1679100 0 142310000 121520000 132220000 2062000 0 1923700 139940000 144630000 137210000 0 0 0 267680000 255970000 252910000 1412600 0 0 11934 1218 11626 224370;224371;224372;224373;224374;224375;224376;224377;224378;224379;224380;224381;224382;224383;224384;224385;224386;224387;224388;224389;224390;224391;224392;224393;224394;224395;224396;224397;224398;224399 137534;137535;137536;137537;137538;137539;137540;137541;137542;137543;137544;137545;137546;137547;137548 137539 15 LDLAQLVAEGDR Unmodified 1298.683 0.68302954 1240 P24193 hypE Hydrogenase isoenzymes formation protein HypE yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 46.242 44.911 2 0.00035478 17988 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 113.47 96.841 9604400 0 0 0 0 0 0 0 0 0 0 5207400 3147600 0 0 0 0 1249400 0 0 0 0 0 0 0 11935 1240 11627 224400;224401;224402 137549;137550 137549 0 LDLAWDGTGEPK Unmodified 1300.6299 0.62993134 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.748 34.969 2 2.6553E-06 16846 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 140.49 138.09 223970000 20447000 21858000 19634000 642720 616530 821510 13854000 14439000 14019000 2363800 1309700 1394900 14324000 12989000 11192000 0 0 0 22853000 22077000 26128000 1812200 1199600 0 11936 806 11628 224403;224404;224405;224406;224407;224408;224409;224410;224411;224412;224413;224414;224415;224416;224417;224418;224419;224420;224421;224422 137551;137552;137553;137554;137555;137556;137557;137558;137559;137560;137561;137562;137563 137555 13 LDLDTASSQLADDVYEVVLR Unmodified 2221.1114 0.11140753 996 P0AG86 secB Protein-export protein SecB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 2 2 2 2 4 2 2 2 2 3 2 2 2 2 2 4 1 2 2 2 2 55.845 54.567 2;3 9.735E-82 21881 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 411.5 406.5 15024000000 786910000 680240000 700130000 191430000 156310000 141440000 616520000 587500000 641920000 204960000 170870000 203970000 738150000 738060000 792720000 1410400000 1748200000 1917400000 891000000 390980000 792490000 192630000 153830000 175780000 11937 996 11629 224423;224424;224425;224426;224427;224428;224429;224430;224431;224432;224433;224434;224435;224436;224437;224438;224439;224440;224441;224442;224443;224444;224445;224446;224447;224448;224449;224450;224451;224452;224453;224454;224455;224456;224457;224458;224459;224460;224461;224462;224463;224464;224465;224466;224467;224468;224469;224470;224471;224472;224473;224474;224475;224476;224477;224478 137564;137565;137566;137567;137568;137569;137570;137571;137572;137573;137574;137575;137576;137577;137578;137579;137580;137581;137582;137583;137584;137585;137586;137587;137588;137589;137590;137591;137592;137593;137594;137595;137596;137597;137598;137599;137600;137601;137602;137603;137604;137605 137565 42 LDLENAILIHDPQLELAPQR Unmodified 2297.2379 0.23794545 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.64 49.217 3 4.5995E-07 24069 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.21 97.243 262480000 43368000 39357000 37977000 1910100 0 0 14473000 14956000 15045000 5131700 3519500 4418000 13751000 9983000 10019000 0 0 0 17827000 13720000 17029000 0 0 0 11938 1213 11630 224479;224480;224481;224482;224483;224484;224485;224486;224487;224488;224489;224490;224491;224492;224493;224494 137606;137607;137608;137609 137609 4 LDLFANEK Unmodified 948.49165 0.49164694 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.738 29.358 2 0.00022739 13726 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 151.27 88.427 1107900000 61188000 46585000 50536000 2450600 2428800 3006100 108700000 101010000 106820000 5016200 5624600 4443400 79075000 81796000 66801000 2597100 2564700 1572100 122060000 137220000 106970000 4804500 4592200 0 11939 499 11631 224495;224496;224497;224498;224499;224500;224501;224502;224503;224504;224505;224506;224507;224508;224509;224510;224511;224512;224513;224514;224515;224516;224517 137610;137611;137612;137613;137614;137615;137616;137617;137618;137619;137620;137621;137622;137623;137624;137625;137626 137616 17 LDLHQAIVDAIIQSDGDAAFK Unmodified 2239.1485 0.14846174 1370 P31475 yieP Uncharacterized HTH-type transcriptional regulator YieP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.57 53.122 3 3.2348E-15 26390 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.26 110.21 343110000 31115000 43873000 34640000 0 0 0 22861000 19587000 23737000 0 0 0 29755000 26808000 29384000 0 0 0 29170000 26884000 25299000 0 0 0 11940 1370 11632 224518;224519;224520;224521;224522;224523;224524;224525;224526;224527;224528;224529 137627;137628;137629 137627 3 LDLLHSVTAESEEPLSAGQIK Unmodified 2236.1587 0.15869207 1848 P76291 cmoB tRNA (mo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 43.624 41.866 3 2.8415E-05 20927 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.054 76.231 88538000 0 0 0 0 0 0 24463000 11020000 0 0 0 0 0 0 8241300 0 0 0 43667000 0 0 0 1146700 0 11941 1848 11633 224530;224531;224532;224533;224534 137630;137631 137630 2 LDLNALNELPK Unmodified 1238.6871 0.68705229 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.341 42.826 2 3.2276E-05 20877 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.78 116.58 757260000 56786000 60449000 57665000 0 0 0 66026000 63966000 48931000 0 0 0 60581000 50603000 56378000 0 0 0 86295000 81030000 68549000 0 0 0 11942 1144 11634 224535;224536;224537;224538;224539;224540;224541;224542;224543;224544;224545;224546 137632;137633;137634;137635;137636;137637;137638 137636 7 LDLNPIGTGPFQLQQYQK Unmodified 2059.0738 0.07384023 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 2 1 1 2 50.644 49.292 2;3 3.7841E-22 24061 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 213.73 159.26 3665900000 1251700000 1193100000 1097500000 0 742770 0 0 37716000 0 0 0 0 0 0 0 0 0 0 21512000 20693000 42877000 0 0 0 11943 1219 11635 224547;224548;224549;224550;224551;224552;224553;224554;224555;224556;224557;224558;224559 137639;137640;137641;137642;137643;137644;137645;137646 137643 8 LDLQNGR Unmodified 814.42972 0.42971539 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.641 14.552 2 0.0021123 4574 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.06 71.705 535310000 78458000 71993000 78089000 710730 504310 515660 35464000 35276000 34424000 0 0 0 26712000 29962000 27638000 0 0 0 42862000 41501000 31198000 0 0 0 11944 1349 11636 224560;224561;224562;224563;224564;224565;224566;224567;224568;224569;224570;224571;224572;224573;224574 137647;137648 137648 2 LDLSASR Unmodified 760.40792 0.40791731 1978 Q47710 yqjK Uncharacterized protein YqjK yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 16.376 16.858 2 0.0019296 5842 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.29 61.651 208720000 0 0 0 0 0 0 76972000 47328000 50924000 6659900 5348600 0 0 0 0 0 0 0 10294000 11196000 0 0 0 0 11945 1978 11637 224575;224576;224577;224578;224579;224580;224581 137649;137650 137650 2 LDLSYSETFNQTHLADAYER Unmodified 2372.0921 0.092069069 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 40.386 38.715 2;3 4.9096E-68 18839 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 354.01 348.54 3286400000 281330000 246810000 233360000 1453100 1325100 1204100 277370000 284390000 275900000 0 0 0 266120000 244650000 230180000 0 0 0 312350000 325190000 304730000 0 0 0 11946 702 11638 224582;224583;224584;224585;224586;224587;224588;224589;224590;224591;224592;224593;224594;224595;224596;224597;224598;224599;224600;224601;224602;224603;224604;224605;224606;224607;224608 137651;137652;137653;137654;137655;137656;137657;137658;137659;137660;137661;137662;137663;137664;137665;137666;137667;137668;137669;137670 137659 20 LDLVDAMIQGADPK Unmodified 1484.7545 0.75447993 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.208 50.969 2 0.14439 24040 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 51.286 46.77 72082000 0 0 0 0 0 0 7907100 0 8961300 0 0 0 8704300 6421800 7023500 0 0 0 12115000 10603000 10346000 0 0 0 11947 118 11639 224609;224610;224611;224612;224613;224614;224615;224616 137671 137671 0 LDLVQFQR Unmodified 1017.5607 0.56072956 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.899 33.353 2 2.7573E-06 16128 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 183.43 161.3 553010000 134360000 134950000 122360000 0 0 0 58393000 52982000 49967000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11948 1376 11640 224617;224618;224619;224620;224621;224622;224623 137672;137673;137674;137675;137676;137677;137678 137674 7 LDLVQFQRPAWDGYLR Unmodified 1976.0268 0.026830458 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 47.883 46.476 3 0.00010917 18693 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 74.772 50.729 38862000 7806600 0 8553700 0 0 0 0 0 0 3172400 4941800 6253100 0 0 4205000 3929100 0 0 0 0 0 0 0 0 11949 1376 11641 224624;224625;224626;224627;224628;224629;224630 137679;137680;137681 137680 3 LDLVSREEFDVQTQVLLR Unmodified 2159.1586 0.15863249 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 47.824 46.056 3 0.0039374 18477 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 52.814 44.32 14006000 0 0 0 1592100 1689500 1704700 0 0 0 3193100 2781500 3045400 0 0 0 0 0 0 0 0 0 0 0 0 11950 1962 11642 224631;224632;224633;224634;224635;224636 137682 137682 1 LDLVVTLDFR Unmodified 1189.6707 0.67067394 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1 1 1 1 1 2 2 1 1 1 53.604 52.175 2 1.324E-06 20772 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 166.16 127.14 71004000 0 0 0 1145600 495320 742070 0 5744400 10147000 4697500 3707500 2437100 4786700 0 3771000 0 0 0 0 7116900 3467200 8351000 8093600 6301100 11951 205 11643 224637;224638;224639;224640;224641;224642;224643;224644;224645;224646;224647;224648;224649;224650;224651;224652;224653;224654;224655 137683;137684;137685;137686;137687;137688 137684 6 LDLYITVK Unmodified 963.56408 0.56408361 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 38.18 36.644 2 0.0023057 16870 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 101.6 93.929 1186200000 126970000 110320000 98241000 7593800 6402000 6623700 84763000 80048000 68754000 0 19075000 18338000 81510000 103040000 86002000 8519900 5407500 6294400 146670000 0 101330000 9974800 10317000 0 11952 378 11644 224656;224657;224658;224659;224660;224661;224662;224663;224664;224665;224666;224667;224668;224669;224670;224671;224672;224673;224674;224675;224676;224677;224678 137689;137690;137691;137692;137693;137694;137695;137696;137697;137698;137699;137700;137701;137702;137703;137704;137705;137706;137707;137708;137709;137710;137711;137712;137713;137714;137715;137716;137717;137718 137717 30 LDMFFSK Unmodified 886.42588 0.42587556 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 37.74 36.026 2 0.0021977 17910 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.54 96.66 494950000 28608000 30732000 25698000 0 0 0 112050000 112690000 110380000 0 0 0 13002000 0 0 0 0 0 19383000 23710000 18690000 0 0 0 11953 522 11645 224679;224680;224681;224682;224683;224684;224685;224686;224687;224688 137719;137720;137721;137722;137723;137724 137719 6 LDMLNEELSDK Unmodified 1305.6122 0.61223236 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 34.306 32.454 2 0.00029335 15749 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 92.538 85.879 38536000 0 0 0 0 0 0 12599000 12721000 13216000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11954 1662 11646 224689;224690;224691 137725;137726;137727 137726 2 LDMLNEELSDKER Unmodified 1590.7559 0.75593649 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 27.666 26.473 2;3 9.943E-24 12449 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 237.37 222.69 865480000 95832000 97729000 93793000 1819900 1630600 1804000 110240000 104630000 117500000 0 0 0 38922000 29837000 31914000 0 0 1224800 52268000 41564000 44773000 0 0 0 11955 1662 11647 224692;224693;224694;224695;224696;224697;224698;224699;224700;224701;224702;224703;224704;224705;224706;224707;224708;224709;224710 137728;137729;137730;137731;137732;137733;137734;137735;137736;137737;137738;137739;137740 137729 13 LDMVGEPCPYPAVATLEAMPQLK Unmodified 2529.2317 0.23173913 572 P0AA31 yedF UPF0033 protein YedF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.297 52.849 2 0.00019225 25000 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 104.45 100.14 216220000 11004000 13326000 13285000 0 0 0 16450000 11955000 11185000 0 0 0 26078000 24018000 25561000 0 0 0 28971000 17668000 16716000 0 0 0 11956 572 11648 224711;224712;224713;224714;224715;224716;224717;224718;224719;224720;224721;224722 137741 137741 1 LDMVPVECVVR Unmodified 1315.6628 0.66282815 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 39.611 38.024 2 0.00017926 18337 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.15 96.922 76598000 18444000 19991000 18992000 0 0 0 0 0 1757100 0 0 0 2664300 0 2311800 0 0 0 2791000 4166300 5481000 0 0 0 11957 334 11649 224723;224724;224725;224726;224727;224728;224729;224730;224731 137742;137743;137744 137744 3 LDNFINRPVK Unmodified 1214.6772 0.6771563 126 P06709 birA Bifunctional ligase/repressor BirA yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 19.214 19.751 3 0.00024407 7612 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.886 76.485 161820000 13049000 11078000 9684300 255530 0 0 15944000 24079000 11106000 0 0 0 11954000 9446500 9788300 0 0 0 14874000 16410000 14148000 0 0 0 11958 126 11650 224732;224733;224734;224735;224736;224737;224738;224739;224740;224741;224742;224743;224744 137745;137746;137747;137748;137749;137750;137751;137752;137753;137754 137748 10 LDNGVGVCGK Unmodified 1017.4913 0.49132937 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 14.626 15.48 2 0.00054181 4249 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.311 73.819 39481000 0 0 19279000 0 0 0 0 5873000 6378000 0 0 0 3712900 2283800 1954700 0 0 0 0 0 0 0 0 0 11959 1019 11651 224745;224746;224747;224748;224749;224750;224751 137755;137756;137757;137758 137756 1 LDNIIWFDHLSTDVIHQVVDK Unmodified 2506.2856 0.28562392 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 53.388 52.005 3;4 5.3774E-07 24464 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 100.94 98.365 621510000 85850000 66323000 96735000 0 0 0 65208000 58080000 52967000 0 3567300 1998400 30820000 40888000 39543000 0 2333500 0 25074000 28918000 23206000 0 0 0 11960 658 11652 224752;224753;224754;224755;224756;224757;224758;224759;224760;224761;224762;224763;224764;224765;224766;224767;224768;224769;224770;224771;224772;224773;224774;224775;224776;224777;224778 137759;137760;137761;137762;137763;137764;137765 137764 6 LDNILFDQGR Unmodified 1189.6091 0.60913632 1480 P37645 yhjG Uncharacterized protein YhjG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.641 35.683 2 0.0044542 12570 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 67.113 50.017 45612000 5411600 4259100 4699900 1986900 2621700 2342000 7489300 6690500 0 3162000 2702200 3404900 0 0 0 0 0 0 0 0 0 0 0 841490 11961 1480 11653 224779;224780;224781;224782;224783;224784;224785;224786;224787;224788;224789;224790 137766;137767 137767 1 LDNLAFPLR Unmodified 1057.592 0.59202969 620 P0AAZ7 ycaR UPF0434 protein YcaR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.01 39.137 2 0.00019889 15572 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 126.67 117.08 1872400000 104740000 100210000 122450000 1239100 0 0 210640000 193790000 183120000 2471100 1868400 1915100 122790000 133770000 115410000 0 0 0 176210000 204710000 194770000 692610 566970 1093000 11962 620 11654 224791;224792;224793;224794;224795;224796;224797;224798;224799;224800;224801;224802;224803;224804;224805;224806;224807;224808;224809 137768;137769;137770;137771;137772 137769 5 LDNLFAR Unmodified 847.4552 0.45520186 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 28.15 27.145 2 4.5868E-05 12407 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 137.83 95.112 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11963 1914 11655 224810;224811;224812 137773;137774;137775 137774 3 LDNLHVAMVGDLK Unmodified 1423.7493 0.74933497 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 32.408 31.074 2;3 2.4334E-07 14709 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 177.81 155.17 5529200000 1636200000 1585000000 1815000000 7394600 9275000 5872400 2746200 2996700 9218400 0 0 0 32889000 34610000 41033000 0 0 0 112430000 116050000 118430000 0 0 0 11964 318 11656 224813;224814;224815;224816;224817;224818;224819;224820;224821;224822;224823;224824;224825;224826;224827;224828;224829;224830;224831;224832;224833;224834;224835;224836;224837;224838;224839 137776;137777;137778;137779;137780;137781;137782;137783;137784;137785;137786;137787;137788;137789;137790;137791;137792;137793;137794;137795;137796;137797;137798;137799;137800;137801;137802;137803 137777 28 LDNLHVAMVGDLK Oxidation (M) 1439.7442 0.74424959 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 2 2 1 26.84 25.926 2;3 4.2106E-05 11681 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 102.87 86.201 81258000 38497000 34897000 7863900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11965 318 11656 224840;224841;224842;224843;224844 137804;137805;137806 137806 142 3 LDNLVFVINCNLQR Unmodified 1716.8981 0.89812447 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 5 3 2 2 2 2 3 2 2 2 2 1 1 1 2 2 2 3 3 2 50.66 49.369 2;3 1.113E-20 20015 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 224.68 218.36 9519900000 303500000 298420000 284070000 1029000000 1082200000 896590000 405230000 373830000 366320000 89207000 67613000 74260000 235290000 212950000 218330000 11729000 6301000 7155700 381620000 406430000 383710000 848510000 758970000 778630000 11966 939 11657 224845;224846;224847;224848;224849;224850;224851;224852;224853;224854;224855;224856;224857;224858;224859;224860;224861;224862;224863;224864;224865;224866;224867;224868;224869;224870;224871;224872;224873;224874;224875;224876;224877;224878;224879;224880;224881;224882;224883;224884;224885;224886;224887;224888;224889;224890;224891;224892;224893;224894;224895;224896;224897 137807;137808;137809;137810;137811;137812;137813;137814;137815;137816;137817;137818;137819;137820;137821;137822;137823;137824;137825;137826;137827;137828;137829;137830;137831;137832;137833;137834;137835;137836;137837;137838;137839;137840;137841;137842;137843;137844;137845;137846;137847;137848;137849;137850;137851;137852;137853;137854;137855;137856;137857;137858 137809 50 LDNMATK Oxidation (M) 807.37965 0.37965365 1740 P69776 lpp Major outer membrane lipoprotein Lpp yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.2988 7.9907 2 0.0092061 1877 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 92.187 81.118 271810000 0 0 0 6364500 6074800 6366700 12307000 0 11086000 62443000 29343000 38752000 7314000 6429000 4761900 0 6844000 0 0 9214900 7261500 19788000 14440000 23018000 11967 1740 11658 224898;224899;224900;224901;224902;224903;224904;224905;224906;224907;224908;224909;224910;224911;224912;224913;224914;224915;224916 137859;137860;137861;137862;137863;137864;137865 137861 597 7 LDNMATK Unmodified 791.38474 0.38473903 1740 P69776 lpp Major outer membrane lipoprotein Lpp yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.231 11.987 2 0.0099634 3136 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.284 64.247 1043100000 11692000 9398000 4893300 89482000 102260000 111110000 0 51018000 43033000 0 0 0 39444000 0 0 0 0 0 62279000 62718000 51838000 138810000 134730000 130430000 11968 1740 11658 224917;224918;224919;224920;224921;224922;224923;224924;224925;224926;224927;224928;224929;224930;224931 137866;137867 137866 2 LDNNDMIDQLEAR Unmodified 1545.7093 0.70932065 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 37.642 35.55 2 3.1516E-24 17456 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 242.45 229.09 129780000 0 0 0 0 0 0 44910000 40905000 42516000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1447900 11969 1649 11659 224932;224933;224934;224935 137868;137869;137870 137870 3 LDNRPLAQLLQMDGPR Unmodified 1835.9676 0.96760102 971 P0AFX9 rseB Sigma-E factor regulatory protein RseB yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 44.079 42.634 2 6.1024E-09 20772 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.8 142.89 34229000 8190600 8109300 5966300 0 0 0 2125100 0 0 0 0 0 0 0 4290300 0 0 0 0 0 5547200 0 0 0 11970 971 11660 224936;224937;224938;224939;224940;224941 137871;137872;137873 137872 3 LDNVVYR Unmodified 877.46577 0.46576654 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.428 17.867 2 0.00029567 5104 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 158.53 104.82 5809000000 674720000 707970000 672590000 26829000 21203000 24262000 306490000 319020000 278160000 65463000 50917000 50633000 339620000 309920000 302730000 33743000 21613000 23310000 475430000 530050000 486060000 30935000 27700000 29597000 11971 375 11661 224942;224943;224944;224945;224946;224947;224948;224949;224950;224951;224952;224953;224954;224955;224956;224957;224958;224959;224960;224961;224962;224963;224964;224965 137874;137875;137876;137877;137878;137879;137880;137881;137882;137883;137884;137885;137886;137887;137888;137889;137890;137891;137892;137893;137894;137895;137896 137874 23 LDPSEYANVK Unmodified 1134.5557 0.55570376 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.398 23.447 2 6.6146E-05 10440 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.26 92.631 9751600 0 0 0 3272900 3410600 3068000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11972 318 11662 224966;224967;224968;224969;224970;224971;224972;224973 137897;137898;137899;137900;137901;137902 137897 5 LDPTPIAHR Unmodified 1018.556 0.55597854 414 P0A8A4 ppsR Phosphoenolpyruvate synthase regulatory protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.797 14.682 2 0.0028277 4368 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 83.753 72.384 157410000 25894000 23292000 23483000 0 0 267530 10027000 8115300 11100000 0 0 0 7594700 8681700 6793800 0 0 0 11237000 9688400 11231000 0 0 0 11973 414 11663 224974;224975;224976;224977;224978;224979;224980;224981;224982;224983;224984;224985;224986 137903;137904;137905;137906 137906 1 LDPTTVTPQQVFNAVCHMR Unmodified 2213.0721 0.072142446 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 50.576 49.134 3 3.5044E-07 23958 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 105.39 105.39 203910000 24334000 22436000 18383000 0 0 0 16616000 21490000 22275000 0 0 0 0 0 0 0 0 0 25013000 29542000 23820000 0 0 0 11974 186 11664 224987;224988;224989;224990;224991;224992;224993;224994;224995 137907;137908;137909;137910 137908 4 LDPVIGR Unmodified 768.44939 0.4493882 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.228 20.617 2 0.0016258 8162 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 126.68 45.677 1564400000 157180000 158160000 130590000 0 0 0 208990000 205170000 208890000 0 0 0 91573000 66644000 60830000 0 0 0 100110000 93238000 83024000 0 0 0 11975 1662 11665 224996;224997;224998;224999;225000;225001;225002;225003;225004;225005;225006;225007 137911;137912;137913;137914;137915;137916;137917;137918;137919;137920;137921;137922 137914 12 LDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYER Unmodified 4228.9535 0.95353326 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 1 2 2 2 50.685 49.366 3;4 1.3254E-37 24054 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 190.48 189.13 5025300000 267260000 213800000 201860000 0 0 4038900 426230000 466000000 380250000 4918500 5860700 6442500 454840000 424550000 418800000 0 3168800 0 619470000 560300000 567550000 0 0 0 11976 337 11666 225008;225009;225010;225011;225012;225013;225014;225015;225016;225017;225018;225019;225020;225021;225022;225023;225024;225025;225026;225027;225028;225029;225030;225031;225032;225033;225034;225035;225036 137923;137924;137925;137926;137927;137928;137929;137930;137931;137932;137933;137934;137935;137936;137937;137938;137939;137940;137941;137942;137943 137929 21 LDQAGRPYNEGEQVVIGGNER Unmodified 2300.1145 0.11453585 1206 P23331 tdk Thymidine kinase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.718 22.952 3 9.0344E-35 10139 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 167.59 163.78 532840000 51987000 49564000 45734000 0 0 0 39353000 35012000 36403000 0 0 0 45022000 44661000 36045000 0 0 0 50471000 40604000 57984000 0 0 0 11977 1206 11667 225037;225038;225039;225040;225041;225042;225043;225044;225045;225046;225047;225048 137944;137945;137946;137947;137948;137949;137950;137951;137952 137946 9 LDQAISLLSSASSQVK Unmodified 1645.8887 0.88866522 1708 P66948 bepA Beta-barrel assembly-enhancing protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 41.334 39.658 2;3 2.544E-06 19194 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.1 121.48 310280000 33678000 34902000 30204000 7698100 5499200 6044400 25258000 26768000 30094000 0 0 0 16775000 14599000 15998000 0 0 0 20599000 20947000 21213000 0 0 0 11978 1708 11668 225049;225050;225051;225052;225053;225054;225055;225056;225057;225058;225059;225060;225061;225062;225063;225064;225065;225066;225067;225068;225069;225070;225071;225072;225073;225074;225075;225076;225077;225078 137953;137954;137955;137956;137957;137958;137959;137960;137961;137962;137963;137964 137964 10 LDQALAEMFPDYSR Unmodified 1654.7661 0.76610725 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 48.794 47.437 2 0.0041353 23493 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.55 63.94 110830000 0 29224000 0 0 0 0 11368000 9182100 8527300 0 0 0 9083200 0 8556200 0 0 0 12208000 12231000 10453000 0 0 0 11979 1429 11669 225079;225080;225081;225082;225083;225084;225085;225086;225087 137965;137966;137967;137968 137965 0 LDQLAEIVKPQR Unmodified 1408.8038 0.80381338 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 27.356 26.055 2;3 3.5413E-05 11360 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.39 93.349 3590000000 293930000 283730000 277370000 8611800 10272000 8962800 279110000 263430000 231630000 10165000 9690500 9043600 299180000 288480000 281180000 8375200 0 6772400 361290000 340050000 293780000 9099800 8253700 7551500 11980 680 11670 225088;225089;225090;225091;225092;225093;225094;225095;225096;225097;225098;225099;225100;225101;225102;225103;225104;225105;225106;225107;225108;225109;225110;225111;225112;225113;225114;225115;225116;225117;225118;225119;225120;225121;225122;225123;225124;225125;225126;225127;225128;225129;225130;225131 137969;137970;137971;137972;137973;137974;137975;137976;137977;137978;137979;137980;137981;137982 137978 12 LDQLPADK Unmodified 898.476 0.47599688 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.641 15.407 2 4.9847E-05 5028 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143.12 76.086 1668500000 212510000 176370000 160560000 0 0 0 122890000 106520000 114930000 0 0 0 84274000 94663000 83476000 0 0 0 163620000 170400000 178270000 0 0 0 11981 28 11671 225132;225133;225134;225135;225136;225137;225138;225139;225140;225141;225142;225143 137983;137984;137985;137986;137987;137988;137989;137990;137991;137992;137993;137994 137991 10 LDQLPADKK Unmodified 1026.571 0.5709599 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.615 12.448 2 1.2966E-05 3373 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.3 145.78 4468100000 570110000 505160000 524790000 0 0 0 297380000 277590000 300760000 0 0 0 236100000 232470000 208940000 0 0 0 471990000 416500000 426290000 0 0 0 11982 28 11672 225144;225145;225146;225147;225148;225149;225150;225151;225152;225153;225154;225155 137995;137996;137997;137998;137999;138000;138001;138002;138003;138004;138005;138006 138001 12 LDQLTVIELDR Unmodified 1313.7191 0.7190807 142 P06992 rsmA Ribosomal RNA small subunit methyltransferase A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 41.976 40.383 2 0.0026121 18979 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 70.977 54.839 149560000 29233000 24683000 23370000 801490 802830 571970 0 0 0 0 0 0 12839000 9815800 10368000 0 0 0 18610000 18460000 0 0 0 0 11983 142 11673 225156;225157;225158;225159;225160;225161;225162;225163;225164;225165;225166 138007;138008;138009;138010;138011;138012 138011 0 LDQMEQDGVVLEAMS Unmodified 1663.7433 0.74332289 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 51.184 49.936 2 0.0035556 23349 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 63.473 57.369 216610000 16629000 13581000 11433000 0 874970 0 8567400 9376300 6907100 0 0 0 23047000 20427000 17817000 0 0 0 28579000 27364000 32009000 0 0 0 11984 744 11674 225167;225168;225169;225170;225171;225172;225173;225174;225175;225176;225177;225178;225179 138013;138014 138014 2 LDRLDEPSSNK Unmodified 1272.631 0.63099397 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 12.035 12.724 3 0.022044 2822 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 47.154 33.042 15029000 0 0 0 1432000 2233100 1561900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3018700 2889200 3893700 11985 937 11675 225180;225181;225182;225183;225184;225185 138015 138015 1 LDSAVTNLNNTTTNLSEAQSR Unmodified 2248.0931 0.093131702 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 30.764 29.375 2;3 4.9119E-63 13859 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 359.86 325.48 263630000 135290000 48704000 47717000 10068000 10581000 11263000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11986 96 11676 225186;225187;225188;225189;225190;225191;225192;225193;225194;225195 138016;138017;138018;138019;138020;138021;138022;138023 138020 7 LDSITWRPVADNNTR Unmodified 1756.8856 0.88564553 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 1 2 2 2 27.945 26.911 2;3 6.1084E-09 12385 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 145.43 126.18 505070000 57424000 56732000 51883000 0 0 0 44135000 33282000 32938000 0 0 0 30600000 23539000 37883000 2547300 0 0 48538000 45952000 39618000 0 0 0 11987 1774 11677 225196;225197;225198;225199;225200;225201;225202;225203;225204;225205;225206;225207;225208;225209;225210;225211;225212;225213;225214;225215;225216 138024;138025;138026;138027;138028;138029;138030;138031;138032;138033;138034;138035;138036 138026 13 LDSLLAHLGD Unmodified 1052.5502 0.55022446 1331 P29217 yceH UPF0502 protein YceH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.025 40.326 2 0.00024202 19690 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.4 107.81 619320000 63386000 62394000 50718000 0 0 0 60286000 54947000 50415000 0 0 0 53255000 42883000 48525000 0 0 0 41756000 46364000 44395000 0 0 0 11988 1331 11678 225217;225218;225219;225220;225221;225222;225223;225224;225225;225226;225227;225228 138037;138038;138039;138040;138041;138042;138043;138044;138045;138046;138047;138048 138040 12 LDSLQLLHFHLGSQMANIR Unmodified 2192.1524 0.15244168 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 44.043 42.489 3;4 2.2185E-14 21031 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 149.09 139.13 672270000 72981000 66227000 64934000 0 0 0 69615000 56543000 51332000 0 0 0 40725000 27343000 0 0 0 0 66385000 79866000 76315000 0 0 0 11989 1172 11679 225229;225230;225231;225232;225233;225234;225235;225236;225237;225238;225239;225240;225241;225242;225243;225244;225245;225246;225247;225248 138049;138050;138051;138052;138053;138054;138055;138056;138057;138058;138059;138060 138051 11 LDTAEFGVVPGVTDK Unmodified 1546.7879 0.78788854 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 41.68 39.948 2 4.4178E-12 19871 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.97 172.45 827450000 0 0 14273000 0 0 0 102910000 110200000 104380000 0 0 0 82606000 79922000 84172000 0 0 0 81901000 82783000 84296000 0 0 0 11990 1323 11680 225249;225250;225251;225252;225253;225254;225255;225256;225257;225258 138061;138062;138063;138064;138065;138066;138067;138068 138061 8 LDTATVASLGEAIGVLEQQSDLK Unmodified 2357.2326 0.2325853 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 55.323 53.848 3 1.079E-29 26780 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 201.61 198.11 237530000 71283000 75294000 66966000 0 0 0 19131000 0 0 0 0 0 0 0 0 0 0 0 4858800 0 0 0 0 0 11991 1173 11681 225259;225260;225261;225262;225263 138069;138070;138071 138069 3 LDTEESGVALR Unmodified 1188.5986 0.59863121 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 2 2 1 2 2 2 1 1 2 2 2 2 1 2 2 2 2 21.626 21.517 2;3 1.5458E-10 6442 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 195.05 149.37 11926000000 0 0 3797500 1022300 1518000 1532500 88257000 76028000 68998000 1524400000 981970000 1027300000 82474000 73523000 74901000 1735900000 1370400000 1235500000 94869000 109680000 90998000 946750000 1139800000 1196800000 11992 1616 11682 225264;225265;225266;225267;225268;225269;225270;225271;225272;225273;225274;225275;225276;225277;225278;225279;225280;225281;225282;225283;225284;225285;225286;225287;225288;225289;225290;225291;225292;225293;225294;225295;225296;225297;225298;225299;225300;225301 138072;138073;138074;138075;138076;138077;138078;138079;138080;138081;138082;138083;138084;138085;138086;138087;138088;138089;138090 138074 17 LDTEESGVALREVFLDSK Unmodified 2007.0161 0.01605058 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 42.551 41.037 3 2.8571E-17 14495 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 158.98 155.74 186200000 0 0 0 0 0 0 0 0 0 14241000 12151000 13343000 0 0 0 35461000 37629000 41255000 0 0 0 11264000 9852500 11007000 11993 1616 11683 225302;225303;225304;225305;225306;225307;225308;225309;225310 138091;138092;138093;138094;138095;138096 138092 6 LDTFEAEK Unmodified 951.45493 0.45492709 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.33 17.786 2 0.0029865 6088 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 95.909 77.179 673670000 28748000 30486000 18851000 0 5131700 5658800 90424000 87122000 77863000 32901000 30830000 30212000 28287000 25760000 24821000 3443100 2896800 2741800 38288000 45244000 40275000 8117100 8485400 7087500 11994 122 11684 225311;225312;225313;225314;225315;225316;225317;225318;225319;225320;225321;225322;225323;225324;225325;225326;225327;225328;225329;225330;225331;225332;225333 138097;138098;138099;138100;138101;138102;138103;138104;138105;138106;138107;138108;138109;138110;138111;138112;138113;138114 138113 15 LDTFEAEKNQQVFYIGTNQPEVLTEIR Unmodified 3181.5932 0.59315849 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 48.95 47.449 3 2.081E-08 19010 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 110.68 106.07 6593900 0 0 0 1756500 1963600 0 0 0 0 0 2873800 0 0 0 0 0 0 0 0 0 0 0 0 0 11995 122 11685 225334;225335;225336 138115;138116 138115 2 LDTFEAEKNQQVFYIGTNQPEVLTEIRR Unmodified 3337.6943 0.69426952 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 43.492 41.692 4 3.3935E-05 14728 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 66.501 65.935 24527000 0 0 0 3888700 3571000 3222500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4391600 5276000 4177600 11996 122 11686 225337;225338;225339;225340;225341;225342 138117;138118;138119;138120 138120 4 LDTLCELNVMEQVYNLGHSTIMQSAWK Unmodified 3179.509 0.50897663 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 55.04 53.583 3 3.5625E-53 26523 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 238.63 235.87 496260000 74484000 76554000 0 0 0 0 0 35452000 0 0 0 0 43820000 37836000 42113000 0 0 0 58399000 65673000 61934000 0 0 0 11997 1639 11687 225343;225344;225345;225346;225347;225348;225349;225350;225351 138121;138122;138123;138124 138123 4 LDTLYPGMMLK Oxidation (M) 1296.6458 0.6457811 1190 P21893 recJ Single-stranded-DNA-specific exonuclease RecJ yes yes 0 1 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 2 2 2 1 2 2 2 1 2 2 31.788 30.439 2 0.10771 11769 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 41.448 39.294 884980000 0 0 0 23324000 50010000 66243000 0 0 0 153640000 130890000 77261000 0 0 0 45244000 21982000 20969000 0 0 0 85522000 101780000 108120000 11998 1190 11688 225352;225353;225354;225355;225356;225357;225358;225359;225360;225361;225362;225363;225364;225365;225366;225367;225368;225369;225370;225371 138125;138126;138127;138128 138126 4 LDTQLVNAGR Unmodified 1085.5829 0.58292157 130 P06721 metC Cystathionine beta-lyase MetC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 21.625 21.785 2 0.00019004 9086 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.19 92.811 81497000 10254000 10651000 9328400 0 0 0 0 0 13429000 0 0 0 30574000 0 7259600 0 0 0 0 0 0 0 0 0 11999 130 11689 225372;225373;225374;225375;225376;225377 138129 138129 1 LDTTGLIDR Unmodified 1002.5346 0.53457439 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.065 26.074 2 3.9581E-11 11739 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206.09 130.78 8941400000 1308100000 1225100000 1177400000 0 0 0 535840000 540210000 511410000 0 0 0 616680000 599960000 557660000 1350100 769450 980280 617550000 639840000 605960000 1327200 1123500 0 12000 489 11690 225378;225379;225380;225381;225382;225383;225384;225385;225386;225387;225388;225389;225390;225391;225392;225393;225394 138130;138131;138132;138133;138134;138135;138136;138137;138138 138135 9 LDTTGLIDRK Unmodified 1130.6295 0.62953741 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 2 20.064 20.447 2;3 3.7581E-12 8036 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 209.19 187.5 1733200000 215850000 234240000 210430000 2987200 3753100 3501400 129920000 122780000 133580000 0 2874500 3168600 114060000 87590000 86839000 0 0 0 130100000 111950000 124660000 5838200 3167800 5877000 12001 489 11691 225395;225396;225397;225398;225399;225400;225401;225402;225403;225404;225405;225406;225407;225408;225409;225410;225411;225412;225413;225414;225415;225416;225417;225418;225419;225420;225421;225422;225423;225424;225425;225426;225427;225428;225429;225430 138139;138140;138141;138142;138143;138144;138145;138146;138147;138148;138149;138150;138151;138152;138153;138154;138155;138156;138157;138158;138159;138160;138161;138162;138163;138164;138165 138146 26 LDTVVVPTNR Unmodified 1112.619 0.61897272 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.977 23.042 2 0.00051539 10096 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.033 74.714 167890000 11968000 13526000 9505500 0 0 0 11737000 13874000 17596000 0 0 1582000 14032000 12183000 11992000 0 0 0 15464000 17755000 14387000 1309700 0 979830 12002 1057 11692 225431;225432;225433;225434;225435;225436;225437;225438;225439;225440;225441;225442;225443;225444;225445 138166;138167 138166 2 LDTVVVPTNRPMIR Unmodified 1609.8974 0.89739619 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 28.363 27.086 2;3 4.7403E-14 10510 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 196.88 196.88 1710000000 60272000 56388000 48159000 10844000 14626000 11194000 56095000 68582000 63002000 137310000 100600000 117630000 65924000 70101000 58453000 92788000 81749000 89197000 96347000 103930000 101530000 70545000 61454000 73292000 12003 1057 11693 225446;225447;225448;225449;225450;225451;225452;225453;225454;225455;225456;225457;225458;225459;225460;225461;225462;225463;225464;225465;225466;225467;225468;225469;225470;225471;225472;225473;225474;225475;225476;225477;225478;225479;225480;225481;225482;225483;225484;225485;225486;225487;225488;225489;225490;225491;225492;225493 138168;138169;138170;138171;138172;138173;138174;138175;138176;138177;138178;138179;138180;138181;138182;138183;138184;138185;138186;138187;138188;138189;138190;138191;138192;138193;138194;138195;138196;138197;138198;138199;138200;138201;138202;138203;138204;138205;138206 138175 39 LDTVVVPTNRPMIR Oxidation (M) 1625.8923 0.89231081 1057 P10408 secA Protein translocase subunit SecA yes yes 0 1 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 25.68 24.466 3 0.0024709 9019 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 62.891 56.728 50347000 2723100 0 0 0 0 0 5686900 4836100 5588000 8475500 7535600 5575400 0 0 0 1234600 1601000 0 0 4251300 0 0 2839100 0 12004 1057 11693 225494;225495;225496;225497;225498;225499;225500;225501;225502;225503;225504 138207 138207 478 1 LDVEIKDR Unmodified 986.53966 0.53965977 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.001 16.817 2 0.00021122 5550 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 157.34 98.361 157060000 5760300 7174500 6435200 0 0 0 16296000 21913000 17796000 0 0 0 12842000 11929000 10783000 0 0 0 15622000 14435000 16078000 0 0 0 12005 1487 11694 225505;225506;225507;225508;225509;225510;225511;225512;225513;225514;225515;225516 138208;138209;138210;138211;138212;138213;138214;138215;138216;138217;138218 138216 10 LDVELGIGDDCALLNIPEK Unmodified 2083.0507 0.050721527 1016 P0AGG0 thiL Thiamine-monophosphate kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.79 52.35 2 0.12965 25748 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 35.018 29.864 67634000 8618900 7729900 6070100 0 0 0 5944700 6121000 5311400 0 0 0 3762100 3985800 2854200 0 0 0 5372600 7193400 4669600 0 0 0 12006 1016 11695 225517;225518;225519;225520;225521;225522;225523;225524;225525;225526;225527;225528 138219 138219 1 LDVIKPDGQVLR Unmodified 1351.7823 0.78234966 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.4 26.054 3 0.036697 9546 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 41.242 37.797 121930000 6508600 9067200 6413400 0 0 0 12228000 13703000 12623000 5855500 4355200 4461800 4603300 6501100 5847600 0 0 0 11052000 9552600 7714000 1440700 0 0 12007 1877 11696 225529;225530;225531;225532;225533;225534;225535;225536;225537;225538;225539;225540;225541;225542;225543;225544 138220 138220 1 LDVKDIVTDSR Unmodified 1259.6721 0.67213051 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 29.186 28.003 3 0.00019024 9456 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 76.522 68.956 25448000 0 0 0 2912800 3200800 2948400 0 0 0 0 3287900 2277900 0 0 0 1237100 1179400 1346000 0 0 0 0 3995100 3062000 12008 648 11697 225545;225546;225547;225548;225549;225550;225551;225552;225553;225554;225555 138221;138222;138223;138224;138225;138226;138227 138226 7 LDVLDER Unmodified 858.4447 0.44469675 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 24.081 23.148 2 0.0042857 10175 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.45 76.341 700280000 124670000 85937000 95355000 0 0 0 50795000 56957000 49761000 0 0 0 32979000 0 0 0 0 0 72855000 67642000 63331000 0 0 0 12009 444 11698 225556;225557;225558;225559;225560;225561;225562;225563;225564;225565 138228;138229;138230;138231;138232 138231 1 LDVLDGLK Unmodified 871.50148 0.50148335 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 35.355 33.679 2 0.00042793 17302 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 139.68 67.964 7077600000 741040000 748760000 799000000 2970700 2534600 2723000 457670000 524540000 442660000 2642800 2995700 2412400 495660000 487150000 482320000 0 0 0 598920000 612340000 667110000 1233000 1696600 1249300 12010 333 11699 225566;225567;225568;225569;225570;225571;225572;225573;225574;225575;225576;225577;225578;225579;225580;225581;225582;225583;225584;225585;225586;225587;225588;225589;225590;225591;225592;225593;225594;225595;225596;225597;225598 138233;138234;138235;138236;138237;138238;138239;138240;138241;138242;138243;138244;138245;138246;138247;138248;138249;138250 138242 16 LDVLTGHTATNTR Unmodified 1397.7263 0.72629134 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 16.66 17.409 2;3 2.6093E-06 5823 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 132.17 121.34 425780000 19576000 0 0 0 0 0 0 0 0 0 0 0 109450000 99219000 94608000 912250 0 1213500 36724000 36151000 27935000 0 0 0 12011 1513 11700 225599;225600;225601;225602;225603;225604;225605;225606;225607;225608;225609;225610;225611;225612;225613;225614 138251;138252;138253;138254;138255;138256;138257;138258;138259;138260 138260 8 LDVPLLVEVGSGENWDQAH Unmodified 2077.0116 0.011633904 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.807 53.359 2 2.8318E-30 25189 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 224.43 218.35 229360000 16237000 19584000 17683000 0 0 0 20931000 21159000 21190000 0 0 0 15831000 16489000 15055000 0 0 0 23282000 24157000 17764000 0 0 0 12012 37 11701 225615;225616;225617;225618;225619;225620;225621;225622;225623;225624;225625;225626 138261;138262;138263;138264 138264 4 LDVQFDNVEEAIAMSAMYAANHLK Unmodified 2679.2673 0.26727302 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.324 53.859 3 2.8515E-22 26404 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 172.34 172.27 1598800000 113030000 103040000 103160000 0 1932800 0 179050000 143590000 159590000 0 0 3861100 141380000 138840000 116840000 0 0 0 149780000 135880000 103520000 5291700 0 0 12013 1184 11702 225627;225628;225629;225630;225631;225632;225633;225634;225635;225636;225637;225638;225639;225640;225641 138265;138266;138267;138268;138269;138270;138271;138272;138273;138274;138275;138276 138270 12 LDVSTTESLLIDK Unmodified 1432.7661 0.76609047 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 42.698 41.008 2 4.385E-07 20299 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.91 118.44 923240000 88699000 89389000 71318000 842000 1485900 866390 137090000 121200000 119690000 0 0 0 48018000 53955000 45211000 0 0 0 44394000 50869000 50209000 0 0 0 12014 1086 11703 225642;225643;225644;225645;225646;225647;225648;225649;225650;225651;225652;225653;225654;225655;225656;225657;225658 138277;138278;138279;138280;138281;138282;138283;138284;138285;138286;138287;138288;138289;138290;138291;138292;138293 138280 17 LDVVNFISHGTR Unmodified 1356.715 0.71499837 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 36.654 34.981 2;3 1.0738E-06 17176 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.39 116.19 577140000 75776000 82779000 73433000 3548800 4495200 4792100 37692000 33266000 30830000 16391000 15669000 16758000 30043000 27109000 30905000 3341500 2340700 4206800 19690000 27138000 25550000 3853400 3871800 3662700 12015 658 11704 225659;225660;225661;225662;225663;225664;225665;225666;225667;225668;225669;225670;225671;225672;225673;225674;225675;225676;225677;225678;225679;225680;225681;225682;225683;225684;225685;225686;225687;225688;225689;225690;225691;225692;225693;225694;225695;225696;225697;225698;225699;225700;225701;225702;225703 138294;138295;138296;138297;138298;138299;138300;138301;138302;138303;138304;138305;138306;138307;138308;138309;138310;138311;138312;138313;138314;138315;138316;138317;138318;138319 138303 26 LDVVNLISK Unmodified 999.59645 0.59644637 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.522 38.635 2 5.1921E-05 19213 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.52 75.275 7173800000 0 0 0 663230 0 0 739780000 622170000 636510000 900580 0 0 721170000 720950000 620060000 0 0 0 1033600000 1073500000 998710000 1780100 2099300 1900500 12016 1324 11705 225704;225705;225706;225707;225708;225709;225710;225711;225712;225713;225714;225715;225716;225717 138320;138321;138322;138323;138324;138325;138326;138327;138328;138329;138330;138331;138332 138320 13 LDVVNLISKDPR Unmodified 1367.7773 0.77726428 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.995 33.505 3 0.0036806 12812 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 53.252 45.882 86856000 0 0 0 1466800 1452600 1563900 7020800 6119300 8046500 3119100 0 2284400 3130800 4720700 4598900 1940900 1806100 1913000 10122000 7960200 8393900 2973900 3462700 4759800 12017 1324 11706 225718;225719;225720;225721;225722;225723;225724;225725;225726;225727;225728;225729;225730;225731;225732;225733;225734;225735;225736;225737 138333;138334;138335;138336 138335 4 LDVVTQVCPFPLIEAK Unmodified 1827.9805 0.98045712 1403 P33014 yeeD UPF0033 protein YeeD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.994 51.567 2 1.7603E-13 25095 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 165.58 153.79 184380000 9321600 9176100 9307800 0 0 0 13039000 15346000 11241000 0 0 0 13097000 15485000 11309000 0 0 0 23438000 28669000 24949000 0 0 0 12018 1403 11707 225738;225739;225740;225741;225742;225743;225744;225745;225746;225747;225748;225749 138337;138338;138339 138339 3 LDVYPHQLSGGMSQR Unmodified 1686.8148 0.81478877 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 26.18 24.994 3 3.0298E-05 11053 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.641 85.218 147360000 20349000 20674000 23929000 0 0 0 3493800 3178200 0 0 0 1600300 0 0 0 0 0 0 6600800 35369000 32165000 0 0 0 12019 592 11708 225750;225751;225752;225753;225754;225755;225756;225757;225758 138340;138341;138342 138342 3 LDYELKPMDFSGIIPALQTK Unmodified 2278.1919 0.19190646 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.124 52.684 2;3 3.7013E-37 24852 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 236.75 223.01 4181500000 743850000 788540000 732490000 0 0 0 117860000 91307000 101690000 0 0 0 360500000 345720000 362140000 0 0 0 193160000 168130000 176140000 0 0 0 12020 877 11709 225759;225760;225761;225762;225763;225764;225765;225766;225767;225768;225769;225770;225771;225772;225773;225774;225775;225776;225777;225778;225779;225780;225781;225782 138343;138344;138345;138346;138347;138348;138349;138350;138351;138352;138353;138354;138355;138356;138357;138358 138356 16 LDYVIPSR Unmodified 961.52328 0.52328142 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.285 27.167 2 0.00027734 12733 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 148.38 119.87 3496900000 247330000 213620000 217340000 1063700 1011200 1075000 289590000 246030000 215980000 0 0 0 340480000 307420000 326970000 909640 813270 833770 355090000 384490000 344690000 0 878810 1297200 12021 1388 11710 225783;225784;225785;225786;225787;225788;225789;225790;225791;225792;225793;225794;225795;225796;225797;225798;225799;225800;225801;225802 138359;138360;138361;138362;138363;138364;138365;138366;138367;138368;138369;138370 138360 12 LDYYGLK Unmodified 870.44872 0.4487195 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.214 26.009 2 0.0053719 11812 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 99.919 71.391 2265200000 246590000 228650000 210060000 0 722280 988520 290110000 277120000 284820000 0 0 0 117870000 119150000 122560000 0 0 0 113230000 128670000 123880000 788130 0 0 12022 1086 11711 225803;225804;225805;225806;225807;225808;225809;225810;225811;225812;225813;225814;225815;225816;225817 138371;138372;138373;138374;138375;138376;138377;138378;138379;138380 138374 10 LDYYSAMQVLDR Unmodified 1472.697 0.69696505 870 P0AEL6 fepB Ferrienterobactin-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 47.555 46.267 2 2.4344E-06 21587 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 141.93 105.24 78146000 0 16509000 0 0 0 0 0 0 0 0 0 0 7865500 9274300 7344500 0 0 0 10973000 11454000 14726000 0 0 0 12023 870 11712 225818;225819;225820;225821;225822;225823;225824 138381;138382;138383;138384;138385;138386 138386 6 LEADKDFYVCSLSNLVNIYK Unmodified 2390.1828 0.18279833 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 52.929 51.517 3 0.0016613 25217 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 39.825 36.984 490930000 92487000 85922000 76081000 0 0 0 38067000 0 41421000 0 0 0 20337000 21684000 19243000 0 0 0 40505000 20955000 34225000 0 0 0 12024 218 11713 225825;225826;225827;225828;225829;225830;225831;225832;225833;225834;225835 138387 138387 1 LEAEQAR Unmodified 815.41373 0.41373097 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.818 11.391 2 0.0060552 2579 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.071 64.957 476400000 0 46039000 41132000 0 0 0 5135100 38876000 26799000 5635800 6717400 0 47426000 42517000 34767000 14989000 12053000 14281000 48805000 50302000 40920000 0 0 0 12025 1445 11714 225836;225837;225838;225839;225840;225841;225842;225843;225844;225845;225846;225847;225848;225849;225850;225851 138388;138389;138390;138391;138392;138393 138391 6 LEAIAQIK Unmodified 884.53312 0.53311783 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 22.735 22.134 2 0.068348 9673 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 55.902 6.2523 136830000 14904000 13047000 11104000 0 0 0 36528000 25671000 20068000 0 0 0 0 0 0 0 0 0 6360400 9144900 0 0 0 0 12026 1476 11715 225852;225853;225854;225855;225856;225857;225858;225859 138394 138394 1 LEALASAVGPVR Unmodified 1181.6768 0.67682195 1998 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 5 5 4 3 3 3 2 2 2 3 4 3 20.86 20.828 2;3 0.0011517 6388 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 75.378 53.915 138110000000 0 0 0 12289000000 12322000000 11167000000 0 0 0 14737000000 15795000000 15190000000 0 0 0 4312700000 3290200000 3197900000 0 0 0 15014000000 15978000000 14821000000 + 12027 1998 11716 225860;225861;225862;225863;225864;225865;225866;225867;225868;225869;225870;225871;225872;225873;225874;225875;225876;225877;225878;225879;225880;225881;225882;225883;225884;225885;225886;225887;225888;225889;225890;225891;225892;225893;225894;225895;225896;225897;225898 138395;138396;138397;138398;138399;138400;138401;138402;138403;138404;138405;138406;138407;138408;138409 138400 12 LEALFYGLGSDGSVSATK Unmodified 1813.9098 0.90979459 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.367 44.877 2 1.5137E-09 22173 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159 151.09 139610000 12002000 11063000 11867000 0 0 0 14876000 13079000 11918000 0 0 0 12217000 9040400 7504500 0 0 0 12232000 12401000 11409000 0 0 0 12028 1609 11717 225899;225900;225901;225902;225903;225904;225905;225906;225907;225908;225909;225910 138410;138411;138412;138413;138414;138415;138416 138412 7 LEALGIK Unmodified 742.45889 0.45889025 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 22.753 22.222 2 0.070299 9797 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.383 6.6684 1447300000 162570000 169490000 137500000 0 1316900 0 144800000 0 180630000 0 0 0 150830000 0 0 0 0 0 145680000 169340000 185140000 0 0 0 12029 111 11718 225911;225912;225913;225914;225915;225916;225917;225918;225919;225920 138417;138418 138417 0 LEALQTQVADASFFSQPHEQTQK Unmodified 2602.2663 0.26634504 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 38.496 36.546 3 1.6867E-15 16869 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 123.61 121.99 239900000 33800000 0 0 0 0 757850 35746000 36789000 37904000 1641800 2316800 0 32197000 29392000 28164000 0 0 0 0 0 0 0 1194600 0 12030 1564 11719 225921;225922;225923;225924;225925;225926;225927;225928;225929;225930;225931 138419;138420;138421;138422;138423;138424 138424 6 LEALREEQMAK Unmodified 1316.6758 0.67583567 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 1 2 2 2 2 15.186 15.962 2;3 1.2821E-19 5381 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 238.01 170.52 2725800000 219500000 172600000 157360000 504540 666340 0 261830000 265450000 250190000 650320 0 0 206990000 80508000 254980000 0 0 0 301970000 289940000 262700000 0 0 0 12031 92 11720 225932;225933;225934;225935;225936;225937;225938;225939;225940;225941;225942;225943;225944;225945;225946;225947;225948;225949;225950;225951;225952;225953;225954;225955;225956;225957 138425;138426;138427;138428;138429;138430;138431;138432;138433;138434;138435;138436;138437;138438;138439;138440;138441;138442;138443;138444;138445;138446;138447 138431 23 LEARPTADLCIDCK Unmodified 1660.7913 0.79127614 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 23.197 22.529 2;3 3.378E-08 9686 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.73 134.51 513790000 38963000 39678000 33912000 0 0 0 41059000 40977000 45962000 0 0 0 44699000 38869000 37531000 2286300 0 3117500 44043000 49834000 52864000 0 0 0 12032 674 11721 225958;225959;225960;225961;225962;225963;225964;225965;225966;225967;225968;225969;225970;225971;225972;225973;225974;225975;225976;225977;225978;225979;225980;225981;225982;225983 138448;138449;138450;138451;138452;138453;138454;138455;138456;138457;138458;138459;138460;138461;138462;138463;138464;138465;138466 138457 19 LEASGGVQDQALSLK Unmodified 1514.794 0.79403656 1983 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 28.918 27.62 3 0.12115 12700 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 14.969 9.0217 92797000 10489000 22575000 0 0 0 0 10793000 12513000 12097000 0 0 0 0 4519400 0 0 0 0 7866200 6210300 5733600 0 0 0 + + 12033 1983 11722 225984;225985;225986;225987;225988;225989;225990;225991;225992;225993 138467 138467 1 LEAVGLR Unmodified 756.44939 0.4493882 1663 P63386 mlaF Probable phospholipid import ATP-binding protein MlaF yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 3 1 3 2 2 1 1 2 1 3 3 3 2 2 2 1 2 2 20.229 20.482 2 0.0006293 6357 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 149.06 53.103 447910000 11776000 13441000 15236000 2107700 0 3402700 64736000 24026000 17689000 10051000 8665200 9574000 62835000 57733000 51888000 0 0 0 26172000 24545000 26396000 5445000 6340800 5854700 12034 1663 11723 225994;225995;225996;225997;225998;225999;226000;226001;226002;226003;226004;226005;226006;226007;226008;226009;226010;226011;226012;226013;226014;226015;226016;226017;226018;226019;226020;226021;226022;226023;226024;226025;226026;226027;226028;226029;226030;226031;226032;226033 138468;138469;138470;138471;138472;138473;138474;138475;138476;138477;138478;138479;138480;138481;138482;138483;138484;138485 138468 16 LEAVIFTPTDWHLLR Unmodified 1809.9778 0.977755 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 52.018 50.869 2;3 5.5731E-15 25013 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 206.97 186.18 2323200000 215000000 206100000 196540000 0 7861300 5147100 288180000 305300000 319500000 4174900 6340500 8739900 139120000 142440000 132510000 3073400 2142700 2721600 111570000 111220000 115480000 0 0 0 12035 585 11724 226034;226035;226036;226037;226038;226039;226040;226041;226042;226043;226044;226045;226046;226047;226048;226049;226050;226051;226052;226053;226054;226055;226056;226057;226058;226059;226060;226061;226062;226063;226064;226065 138486;138487;138488;138489;138490;138491;138492;138493;138494;138495;138496;138497;138498;138499;138500;138501;138502;138503;138504;138505;138506;138507;138508;138509;138510;138511 138501 26 LEAVLAKPECK Unmodified 1256.6799 0.67985842 1205 P23256 malY Protein MalY;Cystathionine beta-lyase MalY;Maltose regulon modulator yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.611 16.418 2 0.00019223 5812 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.7 88.611 62485000 4286900 7085000 4867900 0 0 0 5100000 5184400 5791400 0 0 0 5405400 6155700 5311900 0 0 0 4075400 4970900 4250300 0 0 0 12036 1205 11725 226066;226067;226068;226069;226070;226071;226072;226073;226074;226075;226076;226077 138512;138513;138514;138515;138516;138517;138518;138519 138512 8 LECLDSR Unmodified 891.41202 0.41201641 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By MS/MS 1 13.933 14.732 2 0.050848 4639 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.917 31.75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12037 169 11726 226078 138520 138520 1 LEDAGVR Unmodified 758.39227 0.39226725 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.777 12.422 2 0.078314 3280 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 66.138 31.95 291340000 29100000 29774000 8429400 0 0 0 34296000 29526000 30559000 806100 511920 470890 20074000 0 0 0 0 0 38116000 36163000 33511000 0 0 0 12038 806 11727 226079;226080;226081;226082;226083;226084;226085;226086;226087;226088;226089;226090;226091 138521 138521 0 LEDAQVQLENNR Unmodified 1427.7005 0.70047052 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.999 20.461 2 0.01209 8137 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 62.005 50.515 818110000 55022000 55829000 49496000 0 0 0 89640000 74358000 79987000 0 0 0 58759000 61977000 52319000 0 0 0 87339000 80324000 73056000 0 0 0 12039 1215 11728 226092;226093;226094;226095;226096;226097;226098;226099;226100;226101;226102;226103 138522;138523 138523 0 LEDAVTVLH Unmodified 995.52876 0.52876073 1593 P50466 aer Aerotaxis receptor yes yes 0 0 0 By MS/MS 1 27.801 26.447 2 0.018151 8883 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 64.803 62.228 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12040 1593 11729 226104 138524 138524 1 LEDGLPVGVVDVVEGLDGCHSANISPDNR Unmodified 3032.4509 0.4509277 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 53.162 51.756 3;4 6.3013E-23 25587 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 165.48 164.35 1465500000 491520000 481010000 492950000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12041 1610 11730 226105;226106;226107;226108;226109;226110 138525;138526;138527;138528;138529 138525 5 LEDGQVVVQVVMNNDMEPDSIFR Unmodified 2633.2465 0.24653758 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.59 53.13 3 0.00063058 26078 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 64.962 61.341 326110000 58057000 0 48461000 0 0 0 23965000 22961000 19695000 0 1586700 0 27356000 23170000 20316000 0 0 0 33078000 27944000 19522000 0 0 0 12042 784 11731 226111;226112;226113;226114;226115;226116;226117;226118;226119;226120;226121;226122 138530;138531 138530 1 LEDLNSLAR Unmodified 1029.5455 0.54547343 1803 P76008 ldcA Murein tetrapeptide carboxypeptidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 26.189 25.092 2 5.7689E-05 10781 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 147.04 102.59 136960000 13382000 16735000 12914000 0 0 0 15908000 12292000 0 0 0 0 11973000 10517000 10664000 0 0 0 12052000 12236000 8290900 0 0 0 12043 1803 11732 226123;226124;226125;226126;226127;226128;226129;226130;226131;226132;226133 138532;138533;138534 138534 3 LEDNLPR Unmodified 855.44503 0.4450311 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.304 17.049 2 0.00010302 5962 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 126.24 83.177 1446900000 136130000 126150000 135500000 0 0 0 147720000 138850000 139530000 0 0 0 103350000 104040000 99246000 3361400 0 0 0 152760000 160250000 0 0 0 12044 62 11733 226134;226135;226136;226137;226138;226139;226140;226141;226142;226143;226144;226145;226146 138535;138536;138537;138538;138539;138540;138541;138542;138543;138544 138538 10 LEDTGMGEQMQEYAVSQVLHWFR Unmodified 2753.2578 0.25777096 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.153 53.679 3 1.2408E-28 26756 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 186.01 179.79 622780000 108180000 102630000 89815000 0 0 0 30520000 30916000 25927000 0 0 0 32127000 37845000 28535000 0 0 0 43702000 47417000 45174000 0 0 0 12045 1788 11734 226147;226148;226149;226150;226151;226152;226153;226154;226155;226156;226157;226158 138545;138546;138547;138548;138549;138550 138545 6 LEDWGRR Unmodified 930.46716 0.46716353 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 13.281 13.546 2 0.0021641 3301 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 124.89 83.235 82509000 0 6852100 0 3132600 0 0 0 0 0 18067000 14259000 11217000 0 0 0 8510400 2302800 2573100 0 0 0 0 8091300 7502400 12046 66 11735 226159;226160;226161;226162;226163;226164;226165;226166;226167;226168 138551;138552;138553;138554;138555;138556 138551 6 LEEAGFAFR Unmodified 1038.5134 0.51344502 1941 P77775 yfcH Epimerase family protein YfcH yes yes 0 0 0 By MS/MS 1 32.06 30.908 2 0.081311 14568 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 52.716 45.149 4342400 4342400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12047 1941 11736 226169 138557 138557 0 LEEDDVATPGEGQVLLR Unmodified 1839.9214 0.92142191 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 36.644 35.039 2;3 7.9238E-19 17190 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 238.01 232.4 839870000 111280000 102170000 97147000 0 894070 0 103290000 88952000 104750000 0 0 0 38372000 35402000 31388000 0 0 0 40834000 40581000 44804000 0 0 0 12048 1817 11737 226170;226171;226172;226173;226174;226175;226176;226177;226178;226179;226180;226181;226182;226183;226184;226185;226186;226187;226188;226189;226190;226191;226192;226193;226194 138558;138559;138560;138561;138562;138563;138564;138565;138566;138567;138568;138569;138570;138571;138572;138573 138558 16 LEEDTLR Unmodified 874.43961 0.43961137 1751 P69829 ptsN Nitrogen regulatory protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.242 15.008 2 0.053876 4834 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.035 34.382 403930000 0 0 0 0 0 0 0 60174000 51592000 0 0 290110 44380000 38527000 43979000 0 0 0 51301000 56407000 57274000 0 0 0 12049 1751 11738 226195;226196;226197;226198;226199;226200;226201;226202;226203 138574 138574 0 LEEGLEDGLAHQTLLGVTGSGK Unmodified 2223.1383 0.13829098 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 40.165 38.497 3 1.0527E-21 18842 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.77 158.93 149210000 22681000 21858000 20269000 635700 0 0 15649000 13867000 12231000 0 0 0 6511500 6200400 6214200 0 0 0 6499300 8027600 8560400 0 0 0 12050 426 11739 226204;226205;226206;226207;226208;226209;226210;226211;226212;226213;226214;226215;226216 138575;138576;138577;138578;138579 138578 5 LEEGLNPNAILVPQQGVTR Unmodified 2047.1062 0.10620299 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.901 41.069 2 5.812E-23 20409 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 198.16 188.63 279590000 21292000 15437000 0 1102700 867130 1183500 29653000 28744000 24080000 8330500 8678400 9587100 14321000 10462000 14593000 0 0 0 29723000 28347000 33190000 0 0 0 12051 826 11740 226217;226218;226219;226220;226221;226222;226223;226224;226225;226226;226227;226228;226229;226230;226231;226232;226233 138580;138581;138582;138583;138584;138585;138586;138587 138584 6 LEEGLVELR Unmodified 1056.5815 0.58152458 668 P0ABN5 dcuA Anaerobic C4-dicarboxylate transporter DcuA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.976 30.393 2 0.00021821 14176 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.98 94.798 601210000 12710000 8635100 8913400 1327800 1418500 927190 68844000 63299000 63581000 17014000 11805000 12888000 62722000 57576000 56224000 0 0 0 48546000 47783000 45643000 4215900 3587900 3547500 12052 668 11741 226234;226235;226236;226237;226238;226239;226240;226241;226242;226243;226244;226245;226246;226247;226248;226249;226250;226251;226252;226253;226254 138588;138589;138590;138591;138592;138593;138594;138595;138596;138597 138597 8 LEEGYVK Unmodified 836.42798 0.42798405 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.504 14.37 2 0.0053719 4518 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 99.919 56.919 792730000 37026000 30307000 28864000 0 0 0 64108000 70547000 65054000 0 0 0 76855000 71138000 61620000 0 0 0 109440000 95475000 82295000 0 0 0 12053 311 11742 226255;226256;226257;226258;226259;226260;226261;226262;226263;226264;226265;226266 138598;138599;138600;138601;138602;138603 138600 6 LEEHGMTQLGENHDITLDVSR Unmodified 2393.1281 0.128137 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.016 27.76 4 6.6641E-07 12354 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 98.269 86.313 333020000 21375000 20957000 13994000 0 0 0 51102000 30851000 34710000 0 0 0 27137000 29442000 29225000 0 0 0 27059000 21109000 26060000 0 0 0 12054 1959 11743 226267;226268;226269;226270;226271;226272;226273;226274;226275;226276;226277;226278 138604;138605;138606;138607;138608;138609 138607 6 LEEIIQAHDGHNLNVQLER Unmodified 2227.1345 0.13454301 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 1 1 2 3 3 3 1 3 3 3 3 4 4 28.161 26.959 2;3;4 5.2945E-37 12635 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 231.44 222.94 4049700000 446030000 364460000 404820000 3230900 3753500 6810200 298350000 310370000 296410000 0 5333400 0 259240000 241560000 287730000 0 0 0 385960000 416430000 319180000 0 0 0 12055 561 11744 226279;226280;226281;226282;226283;226284;226285;226286;226287;226288;226289;226290;226291;226292;226293;226294;226295;226296;226297;226298;226299;226300;226301;226302;226303;226304;226305;226306;226307;226308;226309;226310;226311;226312;226313;226314;226315;226316;226317;226318;226319;226320;226321;226322 138610;138611;138612;138613;138614;138615;138616;138617;138618;138619;138620;138621;138622;138623;138624;138625;138626;138627;138628;138629;138630;138631;138632;138633;138634;138635;138636 138613 27 LEEIQECHLVSGDFDYLLK Unmodified 2307.1093 0.10929904 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 1 47.115 46.131 2;3 1.6303E-17 16693 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 198.13 194.81 953780000 93032000 96536000 82422000 0 0 1321300 0 0 14395000 0 1403100 2444500 13722000 11530000 10193000 176730000 188990000 224950000 10249000 12430000 13428000 0 0 0 12056 733 11745 226323;226324;226325;226326;226327;226328;226329;226330;226331;226332;226333;226334;226335;226336;226337;226338;226339;226340;226341;226342;226343;226344 138637;138638;138639;138640;138641;138642;138643;138644;138645;138646;138647;138648;138649;138650;138651;138652;138653 138645 17 LEEITSGDLIVDGLK Unmodified 1600.856 0.85596811 1053 P10346 glnQ Glutamine transport ATP-binding protein GlnQ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.267 44.777 2 0.13382 21855 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 39.394 24.129 74254000 8562200 6876300 8017700 0 0 0 4846200 2895200 4017400 0 0 0 8294400 6192800 6465600 0 0 0 7372100 5604500 5109400 0 0 0 12057 1053 11746 226345;226346;226347;226348;226349;226350;226351;226352;226353;226354;226355;226356 138654 138654 0 LEELFVSLVNEK Unmodified 1418.7657 0.76569654 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 49.661 48.087 2 0.00010549 19198 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 110.39 105.17 17955000 0 0 0 0 0 0 0 0 0 6749200 4526900 3903000 0 0 0 0 0 0 0 0 0 2775800 0 0 12058 1447 11747 226357;226358;226359;226360 138655;138656;138657 138656 3 LEESHIVVR Unmodified 1080.5928 0.59275797 129 P06720 melA Alpha-galactosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 14.012 14.662 2;3 0.0023601 4789 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.378 66.62 123110000 35070000 33160000 33585000 656870 731080 687080 5307900 0 6807600 3356500 2293900 1457300 0 0 0 0 0 0 0 0 0 0 0 0 12059 129 11748 226361;226362;226363;226364;226365;226366;226367;226368;226369;226370;226371;226372;226373;226374;226375;226376;226377 138658;138659;138660;138661 138658 4 LEEVNAELEQPDVWNEPER Unmodified 2295.0655 0.065519968 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 1 2 2 1 2 41.31 39.606 2;3 2.9681E-67 18546 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 357.91 346.65 914160000 58252000 99638000 44045000 0 0 0 80219000 67076000 66739000 0 0 0 91739000 41493000 89086000 0 0 0 101450000 69790000 104630000 0 0 0 12060 149 11749 226378;226379;226380;226381;226382;226383;226384;226385;226386;226387;226388;226389;226390;226391;226392;226393;226394;226395;226396;226397 138662;138663;138664;138665;138666;138667;138668;138669;138670;138671;138672;138673;138674;138675;138676;138677 138675 16 LEEVTAELHQMCLK Unmodified 1699.8273 0.82732729 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 32.444 31.086 2 0.045151 14690 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 63.624 62.575 38236000 5743600 0 6073600 0 0 0 3540600 2878200 0 0 0 0 0 2522400 1772900 0 0 0 5554100 5854900 4295300 0 0 0 12061 806 11750 226398;226399;226400;226401;226402;226403;226404;226405;226406 138678 138678 0 LEFGDIEGLPR Unmodified 1244.6401 0.6401021 1780 P75825 hcp Hydroxylamine reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 44.057 42.456 2 0.0012079 20987 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.044 77.74 48256000 0 0 0 0 0 0 9500300 8676100 7864000 0 0 0 6692000 6419800 5954400 0 0 0 0 0 3149200 0 0 0 12062 1780 11751 226407;226408;226409;226410;226411;226412;226413 138679;138680;138681;138682;138683 138680 2 LEFGLYK Unmodified 868.46945 0.46945494 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.039 32.533 2 0.0067527 15932 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.163 78.942 1235900000 274220000 263340000 227540000 677190 0 0 63691000 60065000 57347000 0 0 1312000 39372000 30896000 37788000 0 0 0 56130000 57756000 65744000 0 0 0 12063 334 11752 226414;226415;226416;226417;226418;226419;226420;226421;226422;226423;226424;226425;226426;226427 138684;138685;138686;138687;138688;138689;138690;138691;138692;138693;138694;138695 138684 12 LEFIGAPTPLEYLPR Unmodified 1714.9294 0.92940782 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.338 52.89 2 0.00062015 25791 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 87.001 81.341 470110000 85734000 82519000 66749000 0 0 0 33415000 33912000 25812000 0 0 0 17871000 19082000 14347000 0 0 0 31710000 32389000 26569000 0 0 0 12064 1850 11753 226428;226429;226430;226431;226432;226433;226434;226435;226436;226437;226438;226439 138696;138697;138698;138699 138698 0 LEFIINR Unmodified 903.5178 0.51780212 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 1 34.181 32.689 1;2 0.00045564 11288 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 153.67 108.7 2364100000 206840000 193270000 184330000 19193000 16283000 17198000 176280000 162160000 155010000 40891000 32097000 31118000 139060000 120400000 140670000 19100000 14635000 15094000 205110000 207940000 196180000 23648000 25500000 22044000 12065 1210 11754 226440;226441;226442;226443;226444;226445;226446;226447;226448;226449;226450;226451;226452;226453;226454;226455;226456;226457;226458;226459;226460;226461;226462;226463;226464;226465;226466;226467;226468;226469;226470;226471;226472;226473;226474;226475;226476;226477;226478;226479 138700;138701;138702;138703;138704;138705;138706;138707;138708;138709;138710;138711;138712;138713;138714;138715;138716;138717;138718;138719;138720;138721;138722;138723;138724 138716 24 LEFNNDNR Unmodified 1020.4625 0.46247208 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.77 15.573 2 2.4781E-06 5287 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 185.42 156.08 2500500000 161460000 169140000 166330000 1037100 637090 0 265320000 240600000 228350000 0 0 0 229650000 199300000 169810000 0 0 0 217600000 217130000 234100000 0 0 0 12066 771 11755 226480;226481;226482;226483;226484;226485;226486;226487;226488;226489;226490;226491;226492;226493 138725;138726;138727;138728;138729;138730;138731;138732;138733 138725 9 LEFNNDNRK Unmodified 1148.5574 0.5574351 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 3 2 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 11.703 12.475 2;3 8.6241E-08 3384 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 198.87 178.35 2868200000 169510000 145880000 219640000 1679800 1692700 1282400 311150000 310660000 277170000 993980 1036800 897870 224140000 209770000 224070000 0 0 1522600 272490000 262840000 231770000 0 0 0 12067 771 11756 226494;226495;226496;226497;226498;226499;226500;226501;226502;226503;226504;226505;226506;226507;226508;226509;226510;226511;226512;226513;226514;226515;226516;226517;226518;226519;226520;226521;226522;226523;226524;226525;226526 138734;138735;138736;138737;138738;138739;138740;138741;138742;138743;138744;138745;138746;138747;138748;138749;138750;138751;138752;138753;138754 138747 21 LEFSIYR Unmodified 926.48617 0.48616764 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.96 33.457 2 0.00011623 16004 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.39 149.77 840700000 54612000 56261000 45771000 13234000 12197000 11000000 36436000 38399000 35240000 15197000 12171000 13479000 43816000 43515000 38067000 6755600 3886000 3819300 101480000 101120000 95446000 19217000 21975000 17601000 12068 150 11757 226527;226528;226529;226530;226531;226532;226533;226534;226535;226536;226537;226538;226539;226540;226541;226542;226543;226544;226545;226546;226547;226548;226549;226550 138755;138756;138757;138758;138759;138760;138761;138762;138763;138764;138765;138766;138767;138768 138762 13 LEFTDGEFR Unmodified 1112.5138 0.51383895 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 33.548 32.183 2 0.00081385 15220 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.302 90.368 32908000 0 0 0 0 0 0 0 0 0 0 0 0 7806500 5407300 0 0 0 0 11084000 8610700 0 0 0 0 12069 1070 11758 226551;226552;226553;226554;226555 138769;138770 138769 2 LEFTGQSVDAPLLSETAR Unmodified 1932.9793 0.97927114 1346 P30750 metN Methionine import ATP-binding protein MetN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.786 43.104 2 7.9432E-07 17547 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 132.86 126.82 127280000 9387000 8381500 10479000 0 0 0 13624000 11590000 11606000 5830400 5400000 5898800 9170700 5580300 6442200 0 0 0 7417000 7640400 8827300 0 0 0 12070 1346 11759 226556;226557;226558;226559;226560;226561;226562;226563;226564;226565;226566;226567;226568;226569;226570 138771;138772;138773 138771 3 LEFYHQGMYFDTPVK Unmodified 1873.8709 0.87090667 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 38.787 37.155 2;3 2.6941E-20 18083 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 215.51 199.97 1566000000 177960000 145080000 155530000 3424200 2421200 2569800 117000000 115540000 112440000 11793000 12406000 12063000 91220000 76712000 91592000 3964400 3278700 2616700 136920000 130190000 124710000 12669000 13027000 10877000 12071 1408 11760 226571;226572;226573;226574;226575;226576;226577;226578;226579;226580;226581;226582;226583;226584;226585;226586;226587;226588;226589;226590;226591;226592;226593;226594;226595;226596;226597;226598;226599;226600;226601;226602;226603;226604;226605;226606 138774;138775;138776;138777;138778;138779;138780;138781;138782;138783;138784;138785;138786;138787;138788;138789;138790;138791;138792;138793;138794;138795;138796;138797;138798;138799;138800;138801 138791 27 LEGDRDK Unmodified 831.40865 0.4086456 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 6.5173 7.2498 1 0.069238 1313 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.252 39.425 9824300 3518100 2971000 3335200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12072 154 11761 226607;226608;226609 138802 138802 1 LEGGNDVSLK Unmodified 1030.5295 0.52948901 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.053 16.677 2 0.00025665 5693 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 116.05 64.263 6841600000 506280000 539000000 484490000 2118700 0 0 720140000 815870000 702940000 0 2290500 0 522840000 532020000 430130000 4126400 3837000 3213400 547720000 529190000 495350000 0 0 0 12073 771 11762 226610;226611;226612;226613;226614;226615;226616;226617;226618;226619;226620;226621;226622;226623;226624;226625;226626 138803;138804;138805;138806;138807;138808;138809;138810;138811;138812;138813;138814 138808 12 LEGILLDPVYTGK Unmodified 1416.7864 0.78643198 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 46.102 44.708 2 1.3805E-05 21933 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.07 128.77 276570000 88234000 87585000 78758000 0 653490 722600 0 0 0 0 0 0 0 0 20611000 0 0 0 0 0 0 0 0 0 12074 1850 11763 226627;226628;226629;226630;226631;226632 138815;138816;138817;138818 138815 4 LEGNGQLAR Unmodified 956.50394 0.50394297 969 P0AFX4 rsd Regulator of sigma D yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.409 12.815 2 0.0047118 2698 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 77.058 54.038 21043000 0 0 0 1913900 2664600 2956400 0 0 0 2665800 1938300 2297000 0 0 0 1146800 1046700 1075400 0 0 0 2538000 800340 0 12075 969 11764 226633;226634;226635;226636;226637;226638;226639;226640;226641;226642;226643 138819 138819 1 LEGNNAELGAK Unmodified 1114.5619 0.56185177 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.076 13.674 2 1.6788E-07 4087 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 193.82 165.65 6234800000 755570000 704670000 725240000 5232500 4199200 4312300 288480000 277100000 0 2226100 1774400 1477900 397180000 345450000 364490000 1242500 868030 835410 776130000 786110000 767400000 6963000 7652600 10177000 12076 392 11765 226644;226645;226646;226647;226648;226649;226650;226651;226652;226653;226654;226655;226656;226657;226658;226659;226660;226661;226662;226663;226664;226665;226666 138820;138821;138822;138823;138824;138825;138826;138827;138828;138829;138830;138831 138827 10 LEGNNPAGSVK Unmodified 1084.5513 0.55128709 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.977 12.81 2 1.3856E-05 3578 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 156.83 138.6 638880000 41862000 49411000 35008000 0 0 0 42247000 50710000 48460000 0 0 0 56058000 50883000 57166000 0 0 0 74441000 72125000 60507000 0 0 0 12077 1133 11766 226667;226668;226669;226670;226671;226672;226673;226674;226675;226676;226677;226678 138832;138833;138834;138835;138836;138837;138838;138839;138840 138834 9 LEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISIEK Unmodified 4188.9294 0.92944378 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 44.065 41.815 4 0.13795 16506 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 11.791 11.779 20995000 0 0 0 0 0 0 0 0 0 1761300 2672200 2686800 0 0 0 0 0 0 0 0 0 3795100 5368900 4710300 12078 1435 11767 226679;226680;226681;226682;226683;226684 138841 138841 1 LEGVTAEVVK Unmodified 1043.5863 0.58627561 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.539 21.985 2 0.00032019 9649 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.76 83.626 1646500000 121220000 126160000 108310000 0 0 0 179720000 168120000 147750000 0 0 0 117210000 117260000 97382000 0 0 0 142740000 160410000 160190000 0 0 0 12079 1215 11768 226685;226686;226687;226688;226689;226690;226691;226692;226693;226694;226695;226696 138842;138843;138844;138845;138846;138847;138848;138849;138850;138851 138842 10 LEGWSESGAQAK Unmodified 1261.5939 0.59388018 610 P0AAS7 ybcJ Uncharacterized protein YbcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 18.413 19.066 2 7.4947E-07 7070 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 152.97 137.09 70825000 20537000 19912000 17825000 0 0 0 0 0 2923800 0 0 0 1592700 0 1104000 0 0 0 2388900 2675700 1866100 0 0 0 12080 610 11769 226697;226698;226699;226700;226701;226702;226703;226704;226705 138852;138853;138854 138854 3 LEGYQEDQAK Unmodified 1179.5408 0.54078198 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.62 13.231 2 2.0876E-06 3873 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 157.91 137.39 517210000 17712000 0 18892000 6849000 7467800 6958700 45627000 53827000 47453000 43462000 43084000 40144000 23508000 20129000 27486000 3796400 1909300 3174900 35785000 27379000 23741000 5936300 5878000 7014000 12081 1944 11770 226706;226707;226708;226709;226710;226711;226712;226713;226714;226715;226716;226717;226718;226719;226720;226721;226722;226723;226724;226725;226726;226727;226728 138855;138856;138857;138858;138859;138860;138861;138862;138863;138864;138865;138866;138867;138868;138869 138860 15 LEGYQEDQAKK Unmodified 1307.6357 0.635745 1944 P77804 ydgA Protein YdgA yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 2 2 2 1 1 1 1 11.163 11.802 2;3 6.2775E-06 2485 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 172.23 164.95 135060000 0 0 0 4983300 1909200 6023700 0 3520800 0 39025000 34842000 32142000 2135300 0 3748500 0 0 0 4022000 2712600 0 0 0 0 12082 1944 11771 226729;226730;226731;226732;226733;226734;226735;226736;226737;226738;226739;226740;226741;226742;226743 138870;138871;138872;138873;138874;138875 138871 6 LEHICQWYNTAMK Unmodified 1692.7752 0.77523214 314 P0A761 nanE Putative N-acetylmannosamine-6-phosphate 2-epimerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 28.746 27.489 3 0.00023371 12174 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 70.438 66.336 184130000 31992000 30895000 24439000 0 0 0 9027200 10012000 6459900 0 0 0 13147000 16785000 15494000 0 0 0 11397000 14481000 0 0 0 0 12083 314 11772 226744;226745;226746;226747;226748;226749;226750;226751;226752;226753;226754 138876;138877;138878;138879 138878 4 LEHIEATETEGITALPGAIALLSHLNK Unmodified 2840.5284 0.52837339 1922 P77625 yfbT Sugar phosphatase YfbT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.619 51.346 4 8.8457E-16 25536 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 137.24 137.22 500900000 38833000 52130000 31004000 0 0 0 59581000 64941000 39131000 0 0 0 35554000 33446000 30685000 0 0 0 43970000 34653000 36972000 0 0 0 12084 1922 11773 226755;226756;226757;226758;226759;226760;226761;226762;226763;226764;226765;226766 138880;138881;138882;138883;138884;138885;138886;138887;138888;138889;138890;138891 138880 12 LEHLCEAEWDLLVVDEAHHLVWSEDAPSR Unmodified 3454.6252 0.62520367 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 3 2 3 3 3 3 3 3 3 3 4 3 4 3 3 3 3 3 51.091 49.992 3;4;5 3.1812E-122 19861 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 347.28 340.09 13176000000 60657000 55084000 17928000 0 0 0 63361000 57165000 66264000 1268600000 1366900000 1378800000 96844000 86585000 90458000 1905100000 1757900000 2422200000 114080000 119450000 110890000 741250000 712390000 684360000 12085 1616 11774 226767;226768;226769;226770;226771;226772;226773;226774;226775;226776;226777;226778;226779;226780;226781;226782;226783;226784;226785;226786;226787;226788;226789;226790;226791;226792;226793;226794;226795;226796;226797;226798;226799;226800;226801;226802;226803;226804;226805;226806;226807;226808;226809;226810;226811;226812;226813;226814;226815;226816;226817;226818;226819;226820;226821;226822;226823;226824;226825;226826;226827 138892;138893;138894;138895;138896;138897;138898;138899;138900;138901;138902;138903;138904;138905;138906;138907;138908;138909;138910;138911;138912;138913;138914;138915;138916;138917;138918;138919;138920;138921;138922;138923;138924;138925;138926;138927;138928;138929;138930;138931;138932;138933;138934;138935;138936;138937;138938 138918 47 LEHNIIELQAK Unmodified 1306.7245 0.72450043 466 P0A8W2 slyA Transcriptional regulator SlyA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 22.248 22.091 2;3 8.8003E-15 9389 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 221.5 211.13 1126800000 102310000 101300000 82893000 650910 952440 867860 130800000 123280000 119600000 0 1320800 1933700 78498000 62348000 72255000 0 0 0 81649000 84275000 81862000 0 0 0 12086 466 11775 226828;226829;226830;226831;226832;226833;226834;226835;226836;226837;226838;226839;226840;226841;226842;226843;226844;226845;226846;226847;226848;226849;226850;226851;226852;226853;226854;226855;226856 138939;138940;138941;138942;138943;138944;138945;138946;138947;138948;138949;138950;138951;138952;138953;138954;138955 138941 17 LEHNPGK Unmodified 793.40825 0.40825167 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 6.4859 7.1924 2 0.0033765 948 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.24 86.691 841700000 116980000 128380000 132710000 1421100 1610000 1603500 34184000 30543000 29129000 1924700 1883900 2072400 46720000 43295000 37485000 0 0 0 83018000 81608000 60053000 3053700 2169700 1860400 12087 696 11776 226857;226858;226859;226860;226861;226862;226863;226864;226865;226866;226867;226868;226869;226870;226871;226872;226873;226874;226875;226876;226877;226878 138956;138957;138958;138959;138960;138961;138962;138963;138964;138965;138966 138959 11 LEHNPGQYIPQELR Unmodified 1692.8584 0.85836815 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 2 2 2 2 2 2 1 1 2 2 27.454 26.332 2;3 3.6302E-11 12316 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.76 163.32 570780000 6087900 4261000 4506800 0 0 0 97366000 94787000 91672000 0 0 0 75268000 71619000 77458000 0 0 665080 13214000 17052000 16820000 0 0 0 12088 1097 11777 226879;226880;226881;226882;226883;226884;226885;226886;226887;226888;226889;226890;226891;226892;226893;226894;226895;226896;226897;226898;226899 138967;138968;138969;138970;138971;138972;138973;138974;138975;138976;138977;138978 138970 12 LEHQLQLLQEAVNSK Unmodified 1748.9421 0.94209778 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.198 32.77 2;3 2.0058E-11 11430 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 192.86 188.69 154800000 3641400 0 2711500 18759000 24364000 20523000 0 0 0 6330700 7820000 6228300 4837600 4747800 4810100 2070200 2591900 3537100 6963300 9033600 6376800 0 9536900 9920400 12089 1899 11778 226900;226901;226902;226903;226904;226905;226906;226907;226908;226909;226910;226911;226912;226913;226914;226915;226916;226917;226918;226919;226920;226921 138979;138980;138981;138982;138983;138984;138985;138986;138987;138988;138989 138987 11 LEHQLQLLQEAVNSKR Unmodified 1905.0432 0.043208804 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 1 1 2 2 2 30.437 28.608 3;4 3.329E-05 9733 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 84.842 83.81 46267000 0 0 0 10287000 8679800 8825000 0 0 0 3271100 1681400 1336900 0 0 0 0 0 0 0 0 0 3370100 4413800 4401400 12090 1899 11779 226922;226923;226924;226925;226926;226927;226928;226929;226930;226931;226932;226933;226934;226935;226936;226937 138990;138991;138992;138993;138994;138995 138993 6 LEHTGLDAHLDLLLSTHTFGYPK Unmodified 2577.3227 0.32273771 1701 P64636 yrfG GMP/IMP nucleotidase YrfG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 43.483 41.931 5 8.5918E-05 20453 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.89 79.314 70606000 0 0 2353500 0 0 0 6173400 9729900 4588400 0 0 0 5692500 6480500 6068000 0 0 0 12707000 8536200 8276500 0 0 0 12091 1701 11780 226938;226939;226940;226941;226942;226943;226944;226945;226946;226947 138996;138997 138996 2 LEHTLREFHEK Unmodified 1437.7365 0.7364621 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 12.64 12.629 2 0.032558 2887 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 55.461 46.768 10886000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7833600 1274300 1778100 0 0 0 0 0 0 12092 1247 11781 226948;226949;226950 138998 138998 1 LEHVEEEK Unmodified 1011.4873 0.48728985 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 1 1 10.379 11.138 2 6.9236E-05 2580 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 167.24 158 123150000 14851000 18185000 25160000 0 0 0 16338000 16562000 16285000 0 0 0 15768000 0 0 0 0 0 0 0 0 0 0 0 12093 1609 11782 226951;226952;226953;226954;226955;226956;226957;226958;226959 138999;139000;139001;139002 139001 4 LEHYAQNDPDAYGYSGALCR Unmodified 2298.9964 0.99639455 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 26.485 25.42 3 1.2766E-23 11377 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 194.19 194.19 213220000 48967000 38326000 36962000 0 0 0 24198000 21612000 19221000 0 0 0 0 3757500 4707700 0 0 0 3751200 4356000 7361200 0 0 0 12094 757 11783 226960;226961;226962;226963;226964;226965;226966;226967;226968;226969;226970 139003;139004;139005;139006;139007;139008 139007 6 LEIEAIAVR Unmodified 1012.5917 0.59169534 1027 P0AGL2 tdcF Putative reactive intermediate deaminase TdcF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 1 2 1 34.189 32.653 2 1.1925E-06 15484 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 178.87 0 10943000000 1582300000 1755300000 1520100000 2107000 2205900 2031300 1177900000 1049900000 1123500000 0 0 0 312440000 288670000 307590000 0 0 0 589350000 611190000 618070000 0 0 0 12095 1027 11784 226971;226972;226973;226974;226975;226976;226977;226978;226979;226980;226981;226982;226983;226984;226985;226986;226987;226988;226989 139009;139010;139011;139012;139013;139014;139015;139016;139017;139018;139019;139020;139021;139022;139023;139024;139025;139026;139027;139028;139029;139030 139022 21 LEILPAGK Unmodified 839.51165 0.5116541 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.4 25.313 2 0.0034654 11506 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.906 68.887 380850000 32701000 32679000 38793000 0 413680 370120 25343000 24216000 25569000 0 0 0 27477000 25644000 26134000 0 0 0 37241000 37356000 46913000 0 0 0 12096 1221 11785 226990;226991;226992;226993;226994;226995;226996;226997;226998;226999;227000;227001;227002;227003 139031;139032;139033;139034;139035;139036;139037;139038;139039;139040;139041 139033 11 LEKEIETYHNLLEGGQEDFESSGAGK Unmodified 2879.3461 0.3461115 16 CON__P35527 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 1 35.811 33.675 3;4 7.5171E-05 13444 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 71.506 71.243 83119000 0 0 0 0 0 0 0 0 0 19930000 21211000 22915000 0 0 0 0 627060 0 0 0 0 6431100 6852500 5152200 + 12097 16 11786 227004;227005;227006;227007;227008;227009;227010;227011;227012;227013;227014;227015 139042;139043 139043 2 LEKGEVLENLIPEAFAVVR Unmodified 2125.1783 0.1783053 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 53.503 52.368 3;4 1.536E-05 20327 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 86.573 86.282 490470000 0 4339700 7594300 4817400 5985400 5727400 4655800 5142300 2902100 34008000 50485000 51098000 0 5650500 4487300 53810000 54568000 108950000 7601700 0 0 24443000 26386000 27823000 12098 1057 11787 227016;227017;227018;227019;227020;227021;227022;227023;227024;227025;227026;227027;227028;227029;227030;227031;227032;227033;227034;227035;227036;227037;227038;227039;227040 139044;139045;139046;139047;139048;139049 139044 6 LELAMVGR Unmodified 887.48987 0.48987281 153 P07023 tyrA T-protein;Chorismate mutase;Prephenate dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.577 29.221 2 0.000249 13015 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.02 93.129 130270000 9766800 10217000 12571000 0 0 0 10402000 12630000 10355000 0 0 0 11129000 11288000 10509000 0 0 0 9268400 8931100 13199000 0 0 0 12099 153 11788 227041;227042;227043;227044;227045;227046;227047;227048;227049;227050;227051;227052 139050;139051;139052;139053;139054;139055;139056;139057;139058 139058 9 LELEWHQALLR Unmodified 1406.767 0.76703394 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.153 36.48 3 1.2859E-05 17532 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.48 115.43 184440000 22310000 20271000 20996000 0 0 0 27875000 32695000 28467000 0 0 0 6440700 4538900 5490300 0 0 0 6236000 5257700 3866200 0 0 0 12100 64 11789 227053;227054;227055;227056;227057;227058;227059;227060;227061;227062;227063;227064 139059;139060;139061;139062;139063;139064 139064 6 LELIENEILR Unmodified 1240.7027 0.70270235 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 42.686 40.965 2 3.776E-05 19857 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.52 112.43 125840000 37356000 26632000 30005000 0 0 0 6494800 4874800 4128100 0 0 0 2269500 0 3038300 0 0 0 3760000 4001900 3276000 0 0 0 12101 1814 11790 227065;227066;227067;227068;227069;227070;227071;227072;227073;227074;227075 139065;139066;139067 139067 3 LELINPPEEAFVDGR Unmodified 1697.8625 0.86245047 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 46.557 45.157 2 2.033E-11 21130 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 164.81 157.55 360140000 42336000 35975000 28298000 0 0 0 46201000 0 41115000 0 0 0 28439000 27214000 20429000 0 0 0 28926000 32516000 28694000 0 0 0 12102 801 11791 227076;227077;227078;227079;227080;227081;227082;227083;227084;227085;227086 139068;139069;139070;139071;139072;139073;139074;139075;139076;139077;139078 139077 10 LELNYDNFMEEFTAILHR Unmodified 2254.0729 0.072853952 683 P0ABU9 tolQ Protein TolQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 55.364 53.877 3 7.2674E-07 26439 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 101.15 96.796 165890000 0 8944700 0 0 0 0 14638000 11049000 7511700 0 0 0 22783000 15241000 15244000 0 0 0 25229000 19189000 26055000 0 0 0 12103 683 11792 227087;227088;227089;227090;227091;227092;227093;227094;227095;227096 139079 139079 1 LELPDGDFVDLAWSENPAQAQHKPR Unmodified 2832.3831 0.38310613 1573 P45524 yheT Putative esterase YheT yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 46.276 44.412 4 0.0021158 17882 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 55.844 55.057 29973000 0 0 0 0 0 0 0 4367500 5145600 0 3751000 7003700 0 0 0 0 0 0 0 0 4942600 0 1740100 3022200 12104 1573 11793 227097;227098;227099;227100;227101;227102;227103 139080 139080 1 LELPSLQDFGALLEEQSK Unmodified 2016.0415 0.041537049 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 4 2 2 2 2 2 3 2 2 2 3 4 4 3 4 55.396 53.944 2;3 5.7099E-37 26444 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 309 288.34 29751000000 990150000 863280000 915800000 2789200000 3174200000 3058400000 949150000 783550000 850800000 317210000 348270000 318860000 841920000 714250000 610940000 0 0 0 1143800000 1195500000 1136200000 3013600000 2898200000 2838100000 12105 939 11794 227104;227105;227106;227107;227108;227109;227110;227111;227112;227113;227114;227115;227116;227117;227118;227119;227120;227121;227122;227123;227124;227125;227126;227127;227128;227129;227130;227131;227132;227133;227134;227135;227136;227137;227138;227139;227140;227141;227142;227143;227144;227145;227146;227147;227148;227149;227150;227151;227152;227153;227154;227155;227156;227157 139081;139082;139083;139084;139085;139086;139087;139088;139089;139090;139091;139092;139093;139094;139095;139096;139097;139098;139099;139100;139101;139102;139103;139104;139105;139106;139107;139108;139109;139110;139111;139112;139113;139114;139115;139116;139117 139102 37 LELPSLQDFGALLEEQSKEISTTIAFVR Unmodified 3133.6547 0.65469611 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 2 2 1 2 3 2 2 55.876 54.497 3;4 7.0601E-67 21911 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 264 263.49 2585400000 0 0 0 763080000 495590000 539810000 0 0 0 13853000 0 12337000 0 0 0 0 0 0 0 0 0 229450000 276600000 254670000 12106 939 11795 227158;227159;227160;227161;227162;227163;227164;227165;227166;227167;227168;227169;227170;227171;227172;227173;227174 139118;139119;139120;139121;139122;139123;139124;139125;139126;139127;139128 139118 11 LELQGYR Unmodified 877.46577 0.46576654 1113 P15723 dgt Deoxyguanosinetriphosphate triphosphohydrolase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 21.092 21.118 2 0.017717 8302 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.454 29.334 26019000 5492500 5137700 7261600 0 0 0 5111700 0 0 0 1241800 1774100 0 0 0 0 0 0 0 0 0 0 0 0 12107 1113 11796 227175;227176;227177;227178;227179;227180 139129 139129 1 LELQQLHR Unmodified 1035.5825 0.58252764 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.254 18.522 2 0.00015358 6530 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 155.53 130.86 326130000 0 0 0 781010 0 0 0 35452000 0 10726000 8730200 7485100 24229000 22924000 22670000 3285100 1685000 1338400 49682000 61140000 46443000 8251900 9199600 12112000 12108 1064 11797 227181;227182;227183;227184;227185;227186;227187;227188;227189;227190;227191;227192;227193;227194;227195;227196;227197 139130;139131;139132;139133;139134;139135;139136;139137;139138;139139;139140;139141;139142 139141 11 LELVIQR Unmodified 869.53345 0.53345218 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.868 27.574 2 0.00019738 12194 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 166.13 88.406 1781900000 145580000 139800000 119190000 4193100 4330300 5019900 143240000 152990000 0 20225000 19802000 20116000 117920000 156100000 125860000 9265000 6478200 7285700 191180000 199810000 170230000 8475900 6480500 8324200 12109 883 11798 227198;227199;227200;227201;227202;227203;227204;227205;227206;227207;227208;227209;227210;227211;227212;227213;227214;227215;227216;227217;227218;227219;227220 139143;139144;139145;139146;139147;139148;139149;139150;139151;139152;139153;139154;139155;139156;139157;139158;139159;139160 139159 18 LELYLPK Unmodified 874.51641 0.51640513 457 P0A8T1 prmA Ribosomal protein L11 methyltransferase no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.813 34.18 2 0.0053367 16859 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.07 68.297 688040000 47432000 43517000 42804000 0 0 0 68107000 69426000 69619000 0 698150 0 51291000 50243000 47507000 0 0 0 61874000 72593000 62934000 0 0 0 + 12110 457 11799 227221;227222;227223;227224;227225;227226;227227;227228;227229;227230;227231;227232;227233 139161;139162;139163;139164;139165;139166;139167 139161 7 LENEIQTYR Unmodified 1164.5775 0.57750184 13;7 CON__P13645;CON__P02535-1 no no 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.977 19.065 2 1.5594E-11 5683 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 218.06 194.63 138440000 0 0 0 8398400 8428600 8056700 0 0 0 14757000 13890000 10721000 0 0 0 6037000 3882500 5113100 0 0 0 19890000 20119000 19151000 + 12111 13;7 11800 227234;227235;227236;227237;227238;227239;227240;227241;227242;227243;227244;227245 139168;139169;139170 139170 3 LENGDDYFAVNPK Unmodified 1480.6834 0.68342347 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.376 29.019 2 6.1556E-07 13914 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143.89 136.24 242960000 39261000 37397000 33585000 0 0 0 25955000 21261000 22245000 0 0 0 10189000 10227000 9538200 0 0 0 9234700 14303000 9763300 0 0 0 12112 510 11801 227246;227247;227248;227249;227250;227251;227252;227253;227254;227255;227256;227257 139171;139172;139173;139174;139175;139176;139177;139178;139179;139180;139181;139182 139171 12 LENIEPVQSR Unmodified 1183.6197 0.619701 281 P0A6U5 rsmG Ribosomal RNA small subunit methyltransferase G yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.093 19.56 2 4.5388E-05 7615 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.08 90.505 333230000 23689000 19541000 18853000 0 0 0 29681000 30626000 33728000 0 1095600 1231200 28791000 23382000 20727000 0 0 0 32979000 35711000 33200000 0 0 0 12113 281 11802 227258;227259;227260;227261;227262;227263;227264;227265;227266;227267;227268;227269;227270;227271 139183;139184;139185;139186;139187;139188;139189;139190 139183 8 LENLQAVGPAFDLDYDQNR Unmodified 2177.0389 0.038911287 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.63 46.029 3 0.0039691 18706 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 50.87 49.336 87264000 0 0 0 1761000 1521500 0 5173200 5085400 6642400 7015600 4579700 5049600 6776600 3279400 5660600 0 0 0 8674000 6980400 8999600 2516000 4296500 3252400 12114 975 11803 227272;227273;227274;227275;227276;227277;227278;227279;227280;227281;227282;227283;227284;227285;227286;227287;227288 139191;139192;139193;139194 139191 2 LENMFANMTEGEVHEVNIVLK Unmodified 2416.1767 0.1766671 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.049 47.906 3 0.00013241 17280 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 68.639 65.916 157310000 0 0 0 1681700 0 999220 0 13454000 16800000 4010800 3587900 2959700 19883000 15139000 19144000 5257900 3760800 3885000 17323000 16347000 11353000 0 1721800 0 12115 297 11804 227289;227290;227291;227292;227293;227294;227295;227296;227297;227298;227299;227300;227301;227302;227303;227304;227305 139195;139196;139197;139198 139196 4 LENQHFDEITK Unmodified 1372.6623 0.6622941 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 16.714 17.223 2;3 2.6613E-14 5814 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 212.72 208.11 2098100000 101950000 108640000 88766000 8914100 11673000 10273000 127630000 125820000 116220000 25554000 11561000 4101400 175170000 152790000 138400000 8412600 6982100 9745500 271720000 286760000 279940000 7932000 8543200 10579000 12116 660 11805 227306;227307;227308;227309;227310;227311;227312;227313;227314;227315;227316;227317;227318;227319;227320;227321;227322;227323;227324;227325;227326;227327;227328;227329;227330;227331;227332;227333;227334;227335;227336;227337;227338;227339;227340;227341;227342;227343;227344;227345;227346;227347;227348;227349;227350;227351 139199;139200;139201;139202;139203;139204;139205;139206;139207;139208;139209;139210;139211;139212;139213;139214;139215;139216;139217;139218;139219;139220;139221;139222;139223;139224;139225 139221 26 LENQLSPATDVAVVPHSSAAKE Unmodified 2262.1492 0.14919002 750 P0ACV4 lapA Lipopolysaccharide assembly protein A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 28.468 26.761 3 0.07835 10066 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 32.227 29.218 21721000 0 0 0 1425300 1622000 1484000 0 0 3081300 2983600 3702900 3507800 0 0 0 0 0 0 0 0 0 2746100 0 1168600 12117 750 11806 227352;227353;227354;227355;227356;227357;227358;227359;227360 139226 139226 1 LENSLGGIK Unmodified 929.5182 0.51819605 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 18.868 19.117 2 0.0001001 6100 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 136.11 52.499 6870500000 840990000 764010000 798530000 11873000 15273000 16551000 354080000 364100000 313710000 73876000 54256000 60248000 415390000 393960000 334580000 45576000 33416000 31248000 626570000 625160000 572980000 50333000 36330000 37497000 12118 373 11807 227361;227362;227363;227364;227365;227366;227367;227368;227369;227370;227371;227372;227373;227374;227375;227376;227377;227378;227379;227380;227381;227382;227383;227384;227385;227386;227387;227388 139227;139228;139229;139230;139231;139232;139233;139234;139235;139236;139237;139238;139239;139240;139241 139230 15 LENSLGGIKDMGGLPDALFVIDADHEHIAIK Unmodified 3287.686 0.68601302 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 2 2 2 2 50.218 49.169 4;5 6.5906E-07 19665 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 70.109 68.16 237240000 0 0 0 0 4312500 11884000 0 0 0 27614000 29448000 27758000 0 0 0 28241000 22837000 33819000 0 0 0 17698000 16626000 16998000 12119 373 11808 227389;227390;227391;227392;227393;227394;227395;227396;227397;227398;227399;227400;227401;227402;227403;227404;227405;227406;227407;227408 139242;139243;139244;139245;139246;139247;139248;139249;139250;139251 139246 10 LENWPPASIADE Unmodified 1340.6248 0.62484596 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 2 2 2 2 1 1 1 1 1 5 3 3 1 1 1 1 2 1 46.684 45.488 1;2 2.7238E-08 17753 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 166.07 166.07 9540900000 35053000 38539000 29830000 5683200 4670700 3062400 38475000 35352000 33031000 485700000 520590000 452720000 34899000 33438000 30149000 3174300000 1196000000 1321500000 34770000 40443000 35151000 669120000 672710000 615670000 12120 383 11809 227409;227410;227411;227412;227413;227414;227415;227416;227417;227418;227419;227420;227421;227422;227423;227424;227425;227426;227427;227428;227429;227430;227431;227432;227433;227434;227435;227436;227437;227438;227439;227440;227441;227442;227443;227444;227445;227446;227447 139252;139253;139254;139255;139256;139257;139258;139259;139260;139261;139262;139263;139264;139265;139266;139267;139268;139269;139270;139271;139272;139273;139274;139275;139276;139277;139278;139279;139280;139281;139282;139283;139284;139285;139286;139287;139288;139289;139290;139291;139292;139293;139294;139295;139296;139297;139298;139299;139300;139301;139302;139303;139304;139305;139306;139307;139308;139309;139310;139311;139312;139313;139314;139315;139316 139269 62 LEPADDFR Unmodified 961.45051 0.45051041 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 21.182 21.4 2 0.024076 6221 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 65.252 60.397 59990000 9943400 10633000 9526900 0 0 0 0 6243800 7778900 0 0 0 0 1338800 0 5977200 4532800 4015100 0 0 0 0 0 0 12121 1247 11810 227448;227449;227450;227451;227452;227453;227454;227455;227456 139317;139318 139317 1 LEPADDFRDEPVK Unmodified 1529.7362 0.73618733 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 22.36 21.915 2;3 1.4418E-08 9527 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.83 141.19 2983500000 284770000 276050000 262240000 0 0 0 149620000 142140000 134250000 0 0 0 171260000 174910000 152460000 309580000 215600000 228640000 176660000 150050000 155270000 0 0 0 12122 1247 11811 227457;227458;227459;227460;227461;227462;227463;227464;227465;227466;227467;227468;227469;227470;227471;227472;227473;227474;227475;227476;227477;227478;227479;227480;227481;227482;227483;227484;227485;227486 139319;139320;139321;139322;139323;139324;139325;139326;139327;139328;139329;139330;139331;139332;139333;139334;139335;139336;139337;139338;139339;139340;139341;139342;139343;139344;139345;139346;139347;139348;139349;139350;139351;139352 139331 34 LEPADDFRDEPVKLTA Unmodified 1814.905 0.90504357 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 33.875 33.491 2;3 0.00089264 11926 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 75.483 75.143 1614400000 0 0 0 1831000 0 2018000 0 0 0 0 0 0 0 0 0 624000000 470480000 516080000 0 0 0 0 0 0 12123 1247 11812 227487;227488;227489;227490;227491;227492;227493;227494 139353;139354;139355;139356;139357 139354 5 LEPANTLQPILEK Unmodified 1464.8188 0.81879474 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 36.372 34.893 2 3.0843E-05 16888 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.61 82.857 157820000 48172000 51576000 48411000 3143200 3508100 3012800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12124 48 11813 227495;227496;227497;227498;227499;227500 139358;139359;139360;139361 139359 2 LEPGELYYFAGIDEAR Unmodified 1841.8836 0.88357984 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 2 2 2 3 2 2 2 2 1 1 1 2 2 49.906 48.78 2;3 6.832E-10 20001 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 136.93 123.53 262800000 6803200 6759300 5557100 943090 529120 849170 5587700 6190300 0 13859000 11701000 13059000 10437000 37509000 40652000 14163000 8211400 7325900 14953000 10270000 9434400 10129000 14760000 13117000 12125 272 11814 227501;227502;227503;227504;227505;227506;227507;227508;227509;227510;227511;227512;227513;227514;227515;227516;227517;227518;227519;227520;227521;227522;227523;227524;227525;227526;227527;227528;227529;227530;227531;227532;227533;227534;227535;227536 139362;139363;139364;139365;139366;139367;139368;139369;139370;139371 139366 10 LEPIVSVLQSDPEQFEQLKEDYAYSQQMQR Unmodified 3597.7297 0.72972832 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 52.664 51.36 3;4 8.7682E-54 24874 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 239.34 238.63 528710000 39457000 32582000 33683000 0 0 0 39758000 32496000 36114000 13916000 13014000 11141000 34424000 38098000 37647000 0 0 0 54827000 47762000 55253000 4458500 0 4073700 12126 1197 11815 227537;227538;227539;227540;227541;227542;227543;227544;227545;227546;227547;227548;227549;227550;227551;227552;227553;227554;227555;227556;227557;227558;227559;227560;227561;227562;227563;227564;227565;227566;227567;227568 139372;139373;139374;139375;139376;139377;139378;139379;139380;139381;139382;139383;139384 139378 13 LEPSALAGMAGPQR Unmodified 1396.7133 0.71328381 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.686 30.33 2 3.6794E-08 14590 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 147.75 140.11 475890000 22926000 18390000 17594000 0 0 0 46077000 57784000 44148000 0 0 0 28770000 25655000 26588000 0 0 0 61766000 63700000 62488000 0 0 0 12127 51 11816 227569;227570;227571;227572;227573;227574;227575;227576;227577;227578;227579;227580 139385;139386;139387;139388;139389;139390;139391;139392;139393;139394;139395;139396 139386 12 LEPVHVAGVLVSNATLHNADEIER Unmodified 2582.3453 0.34526406 1102 P15042 ligA DNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 1 37.674 36.782 3;4 4.3992E-22 17865 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 167.99 161.27 242490000 0 36959000 0 0 0 0 0 38696000 0 0 0 0 12110000 39747000 41255000 17492000 13350000 13780000 0 29102000 0 0 0 0 12128 1102 11817 227581;227582;227583;227584;227585;227586;227587;227588;227589;227590;227591;227592;227593;227594;227595 139397;139398;139399;139400;139401;139402;139403;139404 139401 8 LEPYFTEGR Unmodified 1110.5346 0.53457439 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 27.417 26.21 2 0.00089562 11952 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.458 88.496 169290000 21574000 19559000 21837000 0 0 0 18648000 0 0 1511600 0 0 0 14749000 14240000 0 0 0 23057000 21289000 12826000 0 0 0 12129 62 11818 227596;227597;227598;227599;227600;227601;227602;227603;227604;227605 139405;139406 139406 2 LEQAAYEMTALR Unmodified 1394.6864 0.68640036 1166 P20605 fic Probable adenosine monophosphate-protein transferase fic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.903 30.477 2 9.2983E-05 14505 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 96.229 82.023 237040000 41237000 35453000 37846000 0 0 0 27073000 35386000 29174000 0 0 0 0 0 5930900 0 0 0 6865100 9183700 7236500 0 0 1659500 12130 1166 11819 227606;227607;227608;227609;227610;227611;227612;227613;227614;227615;227616 139407;139408;139409;139410;139411;139412;139413 139409 2 LEQAEAER Unmodified 944.45632 0.45632407 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.832 11.464 2 0.0074984 2775 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.741 76.966 243200000 26077000 17136000 22605000 1496400 1328000 1561700 0 23645000 0 0 2735300 5752000 24691000 20718000 0 0 1309500 2265000 29585000 27518000 27924000 0 3977500 2871600 12131 1197 11820 227617;227618;227619;227620;227621;227622;227623;227624;227625;227626;227627;227628;227629;227630;227631;227632;227633;227634 139414;139415;139416;139417;139418;139419 139417 0 LEQAWPDSLADGQLIK Unmodified 1782.9152 0.91521432 1645 P62517 mdoH Glucans biosynthesis glucosyltransferase H yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 39.867 38.164 2;4 0.033946 21869 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 66.498 60.526 669610000 8011500 3508000 0 0 0 0 18429000 18947000 18191000 61176000 61835000 43605000 10266000 9740900 7594800 0 0 0 18591000 23473000 17939000 118480000 119400000 110420000 12132 1645 11821 227635;227636;227637;227638;227639;227640;227641;227642;227643;227644;227645;227646;227647;227648;227649;227650;227651;227652;227653;227654;227655;227656;227657;227658;227659;227660 139420;139421 139421 1 LEQELPESGVSLR Unmodified 1455.7569 0.75692277 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By MS/MS 1 38.473 36.268 3 0.094057 18026 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 19.781 12.742 8895200 0 0 0 0 0 0 8895200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12133 1937 11822 227661 139422 139422 1 LEQELVLLAQR Unmodified 1310.7558 0.75580056 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 40.27 38.604 2;3 2.7173E-26 18806 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 249.69 220.21 1121900000 82745000 79344000 74487000 0 0 0 111290000 96505000 107660000 0 0 0 77209000 77844000 74592000 0 0 0 109600000 117190000 113460000 0 0 0 12134 1215 11823 227662;227663;227664;227665;227666;227667;227668;227669;227670;227671;227672;227673;227674;227675;227676;227677;227678;227679;227680;227681;227682;227683;227684;227685 139423;139424;139425;139426;139427;139428;139429;139430;139431;139432;139433;139434;139435;139436;139437;139438;139439;139440;139441;139442;139443;139444;139445 139430 23 LEQFEVNQQR Unmodified 1289.6364 0.6364137 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.429 20.583 2 1.3216E-06 6005 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 190.51 186.92 125990000 0 0 0 15670000 16269000 17017000 5445700 0 5273700 4722300 5895400 4281800 4229200 4025400 2859700 1739500 970980 1249100 6147300 5249000 4798400 6486900 6531900 7131100 12135 1899 11824 227686;227687;227688;227689;227690;227691;227692;227693;227694;227695;227696;227697;227698;227699;227700;227701;227702;227703;227704;227705 139446;139447;139448;139449;139450;139451;139452;139453 139452 8 LEQIAADIK Unmodified 999.56006 0.56006086 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.993 22.405 2 0.00029957 9532 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.89 61.988 1112000000 65891000 73451000 65555000 0 0 0 81422000 80347000 76892000 14873000 12140000 0 70045000 63624000 56581000 59526000 48304000 45386000 84986000 78226000 76449000 18289000 19369000 20662000 12136 688 11825 227706;227707;227708;227709;227710;227711;227712;227713;227714;227715;227716;227717;227718;227719;227720;227721;227722;227723;227724;227725 139454;139455;139456;139457;139458;139459;139460;139461;139462 139454 9 LEQILGQHR Unmodified 1092.604 0.60399136 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 14.867 15.626 2;3 6.0865E-06 5375 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 172.15 145.54 366200000 46844000 45752000 37990000 0 0 0 52404000 53968000 44172000 0 0 0 15397000 7927600 5560900 0 0 0 18746000 17315000 20124000 0 0 0 12137 1557 11826 227726;227727;227728;227729;227730;227731;227732;227733;227734;227735;227736;227737;227738;227739;227740;227741;227742;227743;227744;227745;227746;227747 139463;139464;139465;139466;139467;139468;139469;139470;139471;139472;139473;139474;139475;139476 139463 14 LEQMISQIDKLEDVVK Unmodified 1887.0023 0.002314771 786 P0ADF8 ilvN Acetolactate synthase isozyme 1 small subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 44.201 42.832 3 3.2357E-10 20756 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.19 131.35 261120000 62461000 66102000 55889000 0 0 0 0 0 0 0 0 0 13240000 10385000 8895600 0 0 0 16572000 15433000 12140000 0 0 0 12138 786 11827 227748;227749;227750;227751;227752;227753;227754;227755;227756 139477;139478;139479 139479 3 LEQQALMK Unmodified 959.511 0.51100218 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.261 16.845 2 0.00043426 5802 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.31 57.53 1273100000 111740000 124300000 88226000 0 1753900 3076300 176860000 182660000 167970000 2811500 3257200 3166200 73970000 57690000 60405000 1794600 1377700 1162400 70491000 69417000 70964000 0 0 0 12139 1662 11828 227757;227758;227759;227760;227761;227762;227763;227764;227765;227766;227767;227768;227769;227770;227771;227772;227773;227774;227775;227776 139480;139481 139481 2 LEQVLIR Unmodified 869.53345 0.53345218 1317 P28305 pabC Aminodeoxychorismate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 40.851 39.088 2 0.025713 16843 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 71.378 24.611 219340000 37855000 33968000 30991000 0 0 0 14719000 14618000 15200000 908390 773850 0 11803000 10445000 10539000 0 0 0 11725000 13283000 12509000 0 0 0 12140 1317 11829 227777;227778;227779;227780;227781;227782;227783;227784;227785;227786;227787;227788;227789;227790;227791;227792;227793 139482;139483;139484;139485;139486;139487 139484 6 LEQYFDR Unmodified 969.4556 0.45559579 968 P0AFX0 hpf Ribosome hibernation promoting factor yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.345 21.352 2 0.00078843 8875 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 144.83 138.38 2709300000 510500000 498020000 430820000 3261500 3507000 3967700 324470000 262320000 288710000 4429400 6654200 8118600 0 0 0 1398400 1351600 0 167130000 187380000 0 3243500 2156300 1882100 12141 968 11830 227794;227795;227796;227797;227798;227799;227800;227801;227802;227803;227804;227805;227806;227807;227808;227809;227810;227811;227812 139488;139489;139490;139491;139492;139493;139494;139495;139496;139497 139489 10 LEREYDLDLITTAPTVVYEVETTSR Unmodified 2912.4655 0.46549836 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.048 52.008 3 2.3876E-15 20719 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 143.25 135.97 182770000 0 0 0 2992700 3400400 2811900 0 0 0 5681800 3248000 4261600 0 0 0 35678000 23888000 31221000 0 0 0 28376000 20507000 20706000 12142 1633 11831 227813;227814;227815;227816;227817;227818;227819;227820;227821;227822;227823;227824 139498;139499;139500;139501;139502;139503;139504;139505;139506 139501 9 LESAIANISALK Unmodified 1228.7027 0.70270235 1646 P62601 treF Cytoplasmic trehalase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 35.568 34.105 2 0.0074412 16174 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 63.415 45.104 48067000 12224000 10476000 10486000 0 0 0 0 0 10574000 0 0 0 1797300 0 0 0 0 0 0 2509200 0 0 0 0 12143 1646 11832 227825;227826;227827;227828;227829;227830 139507;139508 139508 1 LESAICLFHQR Unmodified 1372.6922 0.69215444 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 2 3 2 1 1 1 1 1 2 1 1 1 30.414 28.776 2;3 2.1867E-14 13241 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 226.46 174.6 317960000 29679000 31335000 25194000 877540 893290 0 57977000 53577000 45858000 1532100 1099300 731030 5252600 5810700 0 0 0 0 41188000 8839300 7524800 0 590210 0 12144 218 11833 227831;227832;227833;227834;227835;227836;227837;227838;227839;227840;227841;227842;227843;227844;227845;227846;227847;227848;227849;227850;227851;227852 139509;139510;139511;139512;139513;139514;139515;139516;139517;139518 139517 10 LESFASEETR Unmodified 1167.5408 0.54078198 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 18.354 18.988 2 0.00038367 7003 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.35 114.49 69348000 9218500 12070000 8879400 0 0 0 5133200 4254100 0 0 0 0 3579100 3403900 3599100 0 0 0 5710600 7720300 5779400 0 0 0 12145 1295 11834 227853;227854;227855;227856;227857;227858;227859;227860;227861;227862;227863 139519;139520 139520 2 LESFVTDFYQR Unmodified 1403.6721 0.67213051 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 42.823 41.45 2 0.029939 20174 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 57.598 28.512 80147000 8653300 6304800 6397600 0 0 0 0 0 0 0 1796500 0 6866800 7730800 7731800 4094100 0 0 9776400 11747000 9048200 0 0 0 12146 395 11835 227864;227865;227866;227867;227868;227869;227870;227871;227872;227873;227874 139521;139522;139523 139522 0 LESGDLPLEEALNEFER Unmodified 1959.9426 0.94255129 429 P0A8G9 xseB Exodeoxyribonuclease 7 small subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 54.713 53.254 2 0.0030255 25363 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 80.522 67.385 143410000 18431000 23043000 15887000 0 0 0 5876000 9889800 6600800 3803600 0 0 9458500 7732200 12266000 0 0 0 9749800 10862000 9807100 0 0 0 12147 429 11836 227875;227876;227877;227878;227879;227880;227881;227882;227883;227884;227885;227886;227887 139524;139525;139526;139527;139528 139527 0 LESGYLYLGSPVK Unmodified 1424.7551 0.75513185 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.806 37.132 2 7.9323E-07 18078 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 139.86 120.07 225080000 23866000 16043000 18089000 0 0 0 22396000 22550000 23518000 0 0 0 16180000 12311000 13885000 0 0 0 19001000 20586000 16660000 0 0 0 12148 563 11837 227888;227889;227890;227891;227892;227893;227894;227895;227896;227897;227898;227899 139529;139530;139531;139532;139533;139534;139535;139536;139537;139538;139539;139540 139535 12 LESIPGFDIFPDDNR Unmodified 1733.8261 0.82606496 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.926 52.486 2 5.4475E-07 24730 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 152.85 148.24 612890000 29675000 30025000 26382000 0 0 0 78614000 80792000 71218000 0 0 0 50856000 70231000 53791000 0 0 0 45895000 36232000 39175000 0 0 0 12149 167 11838 227900;227901;227902;227903;227904;227905;227906;227907;227908;227909;227910;227911 139541;139542;139543;139544;139545;139546;139547;139548;139549;139550;139551;139552 139551 12 LESITVLPADDK Unmodified 1299.6922 0.69219725 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.883 31.443 2 0.00023907 14863 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 86.014 70.352 244650000 24510000 18434000 16333000 0 0 0 21190000 20660000 17954000 0 0 0 16703000 16528000 14529000 0 0 0 27026000 25505000 25277000 0 0 0 12150 158 11839 227912;227913;227914;227915;227916;227917;227918;227919;227920;227921;227922;227923 139553 139553 0 LESITVLPADDKGPVSVTK Unmodified 1968.0779 0.077922555 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 33.411 31.957 2;3 4.5255E-22 15410 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 214.23 203.59 4642100000 398070000 326020000 310720000 3705400 3060900 2349600 419430000 392540000 342790000 4913800 3371900 4372800 316260000 271820000 295410000 2695200 1726800 1652300 495740000 506280000 530300000 3701300 2622800 2500500 12151 158 11840 227924;227925;227926;227927;227928;227929;227930;227931;227932;227933;227934;227935;227936;227937;227938;227939;227940;227941;227942;227943;227944;227945;227946;227947;227948;227949;227950;227951;227952;227953;227954;227955;227956;227957;227958;227959 139554;139555;139556;139557;139558;139559;139560;139561;139562;139563;139564;139565;139566;139567;139568;139569;139570;139571;139572;139573;139574;139575;139576;139577;139578 139560 25 LESLLPLHLGQVAK Unmodified 1516.8977 0.89771377 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 40.853 39.283 3 0.011929 19175 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 44.511 29.349 50622000 6592700 9748500 4855600 0 0 0 5079300 0 0 0 0 0 4825800 3493400 4914900 0 0 0 6105200 0 5006100 0 0 0 12152 843 11841 227960;227961;227962;227963;227964;227965;227966;227967;227968 139579;139580 139579 1 LESLMTGPR Unmodified 1002.5168 0.51681584 1671 P64461 lsrG Autoinducer 2-degrading protein LsrG yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 23.058 22.554 2 0.009924 9626 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.109 58.145 84055000 29806000 31414000 22835000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12153 1671 11842 227969;227970;227971 139581 139581 0 LESLVEDLVNR Unmodified 1285.6878 0.68778057 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 2 3 2 1 1 1 3 3 2 1 2 2 3 2 1 1 1 44.199 42.633 2;3 1.2975E-19 21134 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 230.1 206.68 6252200000 551320000 516260000 504480000 6177900 6659200 5060100 735070000 673270000 625470000 34427000 28512000 24591000 394920000 338990000 453390000 0 1030100 0 461500000 453120000 416160000 7338200 7698500 6743100 12154 293 11843 227972;227973;227974;227975;227976;227977;227978;227979;227980;227981;227982;227983;227984;227985;227986;227987;227988;227989;227990;227991;227992;227993;227994;227995;227996;227997;227998;227999;228000;228001;228002;228003;228004;228005;228006;228007;228008;228009;228010;228011;228012;228013;228014 139582;139583;139584;139585;139586;139587;139588;139589;139590;139591;139592;139593;139594;139595;139596;139597;139598;139599;139600;139601;139602;139603;139604;139605;139606;139607;139608;139609;139610;139611 139587 29 LESPGGMVHGYGLAASQLQR Unmodified 2070.0317 0.03165784 977 P0AG14 sohB Probable protease SohB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.646 31.267 3 2.9718E-10 12449 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 119.31 117.4 417700000 18963000 19966000 19124000 3395100 3015700 4261400 26420000 28949000 32174000 13069000 11906000 11527000 37870000 30935000 29957000 3671800 3454200 2584900 34023000 35094000 39360000 0 4019200 3964700 12155 977 11844 228015;228016;228017;228018;228019;228020;228021;228022;228023;228024;228025;228026;228027;228028;228029;228030;228031;228032;228033;228034;228035;228036;228037 139612;139613;139614;139615;139616;139617;139618;139619;139620;139621;139622 139613 4 LESQISTLYGGR Unmodified 1322.683 0.68302954 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.277 27.836 2 2.964E-08 12402 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 198.72 130.82 284120000 15579000 11061000 10289000 2921900 3321800 2709100 30985000 33836000 34515000 0 4125300 4160900 13947000 18739000 15204000 0 0 0 27094000 22630000 23148000 3032400 3016900 3806300 12156 595 11845 228038;228039;228040;228041;228042;228043;228044;228045;228046;228047;228048;228049;228050;228051;228052;228053;228054;228055;228056;228057 139623;139624;139625;139626;139627;139628;139629;139630;139631;139632;139633;139634 139632 12 LETGNESLQFIAVR Unmodified 1575.8257 0.82567103 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 40.419 38.753 2;3 2.0133E-26 18644 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 271.14 244.63 2258700000 250420000 247700000 234020000 0 0 0 238010000 232840000 236750000 0 0 0 111850000 121430000 114050000 0 0 0 162050000 167080000 142460000 0 0 0 12157 1154 11846 228058;228059;228060;228061;228062;228063;228064;228065;228066;228067;228068;228069;228070;228071;228072;228073;228074;228075;228076;228077;228078;228079;228080;228081 139635;139636;139637;139638;139639;139640;139641;139642;139643;139644;139645;139646;139647;139648;139649;139650;139651;139652 139646 18 LETIEGSK Unmodified 875.46001 0.46001246 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 12.942 13.564 1;2 0.00030917 4005 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.54 28.609 31824000000 828290000 799520000 896190000 2410100000 2375400000 2408800000 1219100000 1293500000 1213300000 441450000 302820000 390640000 792520000 727930000 706240000 70030000 62575000 83497000 1346100000 1345000000 1229300000 3960200000 3714300000 3206800000 12158 939 11847 228082;228083;228084;228085;228086;228087;228088;228089;228090;228091;228092;228093;228094;228095;228096;228097;228098;228099;228100;228101;228102;228103;228104;228105;228106;228107;228108;228109;228110;228111;228112;228113;228114;228115;228116;228117;228118;228119;228120;228121;228122;228123;228124;228125;228126;228127;228128;228129;228130 139653;139654;139655;139656;139657;139658;139659;139660;139661;139662;139663;139664;139665;139666;139667;139668;139669;139670;139671;139672;139673;139674;139675;139676;139677 139674 25 LETLDTGK Unmodified 875.46001 0.46001246 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 14.28 14.964 2 0.0030318 4789 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.531 18.473 256550000 93600000 81302000 78354000 0 0 1667300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1623600 0 12159 1141 11848 228131;228132;228133;228134;228135 139678 139678 1 LETLGWK Unmodified 845.4647 0.46470391 1003 P0AGB0 serB Phosphoserine phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 28.025 26.729 2 0.0053367 12141 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 100.07 69.398 188290000 0 19148000 0 0 0 0 20958000 16935000 0 642870 0 0 13226000 13766000 12857000 0 0 0 34041000 28098000 28612000 0 0 0 12160 1003 11849 228136;228137;228138;228139;228140;228141;228142;228143;228144;228145 139679;139680;139681;139682;139683;139684;139685;139686;139687 139683 9 LETLPLK Unmodified 812.50076 0.50075507 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.125 24.151 2 0.007515 10875 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 90.986 52.615 100500000 6896200 5601000 5278400 0 0 0 10672000 0 11967000 0 0 0 9153800 9202400 6728600 0 0 0 13131000 10648000 11217000 0 0 0 12161 1421 11850 228146;228147;228148;228149;228150;228151;228152;228153;228154;228155;228156;228157 139688;139689;139690;139691;139692;139693 139691 6 LETLPLKK Unmodified 940.59572 0.59571809 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.109 16.925 2 0.0050455 5888 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 88.942 75.954 133140000 9418800 7339600 8777300 0 0 0 12459000 10215000 14446000 0 0 0 11335000 7270300 8497900 0 0 0 14144000 13377000 15858000 0 0 0 12162 1421 11851 228158;228159;228160;228161;228162;228163;228164;228165;228166;228167;228168;228169 139694;139695;139696 139695 3 LETLTWQFR Unmodified 1192.6241 0.6240581 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 42.38 40.682 2 3.8764E-11 19725 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206.5 199.28 170070000 18250000 18269000 18419000 0 0 0 14398000 11853000 11319000 0 0 0 10100000 9893200 10992000 0 0 0 14859000 15835000 15882000 0 0 0 12163 953 11852 228170;228171;228172;228173;228174;228175;228176;228177;228178;228179;228180;228181;228182 139697;139698;139699;139700;139701;139702;139703;139704;139705;139706 139703 10 LETVMWESK Unmodified 1121.5427 0.54269624 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 29.848 28.71 2 0.0054417 13219 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 74.464 60.746 304200000 110140000 101820000 92251000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12164 1374 11853 228183;228184;228185 139707;139708;139709 139709 1 LETWGLPLSEAK Unmodified 1342.7133 0.71326704 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.307 41.804 2 3.0358E-05 20356 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.89 111.92 251200000 8589500 6724700 5177400 2205600 1786400 1300400 0 23480000 23075000 0 0 0 24301000 24439000 21798000 0 0 0 35743000 39361000 33217000 0 0 0 12165 1494 11854 228186;228187;228188;228189;228190;228191;228192;228193;228194;228195;228196;228197;228198;228199 139710;139711;139712;139713;139714;139715;139716;139717 139713 8 LEVAYFDQHR Unmodified 1276.62 0.62003536 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 25.668 24.55 2;3 1.9763E-06 10997 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 159.11 134.96 428820000 29596000 25151000 25016000 0 0 0 45063000 40979000 36488000 1643400 0 0 28754000 30471000 24833000 0 0 0 46901000 47379000 46543000 0 0 0 12166 1564 11855 228200;228201;228202;228203;228204;228205;228206;228207;228208;228209;228210;228211;228212;228213;228214;228215;228216;228217;228218;228219;228220;228221;228222;228223;228224 139718;139719;139720;139721;139722;139723;139724;139725;139726;139727;139728;139729;139730;139731;139732;139733;139734;139735 139724 18 LEVDGGVK Unmodified 815.43888 0.43888309 976 P0AG07 rpe Ribulose-phosphate 3-epimerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.83 15.405 2 0.022067 4985 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 79.469 19.828 443320000 51647000 51494000 56642000 0 0 0 38702000 36723000 36816000 1829600 1319300 1042900 19199000 22674000 19459000 0 0 0 37382000 32492000 33632000 0 1032600 1232700 12167 976 11856 228225;228226;228227;228228;228229;228230;228231;228232;228233;228234;228235;228236;228237;228238;228239;228240;228241 139736;139737;139738;139739;139740 139737 0 LEVFCEDR Unmodified 1066.4753 0.47534495 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.206 24.171 2 0.014638 10281 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.501 53.466 95866000 10770000 14717000 9559600 0 0 0 9377500 9618300 0 0 724090 0 6284300 6738000 5016600 0 0 0 7138200 8507300 7415100 0 0 0 12168 162 11857 228242;228243;228244;228245;228246;228247;228248;228249;228250;228251;228252;228253 139741;139742;139743;139744;139745;139746;139747 139746 3 LEVIDAR Unmodified 814.45487 0.45486751 1366 P31433 yicH Uncharacterized protein YicH yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 20.105 20.205 2 0.006056 6450 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 97.068 39.604 23452000 0 0 0 2213000 1853400 1679800 0 0 0 2644600 3414900 3238200 0 0 3392700 0 0 0 0 0 0 1954800 1611600 1449200 12169 1366 11858 228254;228255;228256;228257;228258;228259;228260;228261;228262;228263 139748;139749;139750;139751;139752 139749 5 LEVNEDR Unmodified 873.41921 0.41921028 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.111 12.824 2 0.0019296 3566 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 121.29 72.532 899770000 100430000 95356000 103690000 0 0 0 141660000 140900000 125360000 0 0 0 0 0 44713000 0 0 0 43945000 53533000 47232000 1834500 1135700 0 12170 1662 11859 228264;228265;228266;228267;228268;228269;228270;228271;228272;228273;228274;228275 139753;139754;139755;139756 139754 4 LEVVVNER Unmodified 956.5291 0.52909508 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.771 20.028 2 7.0657E-05 7977 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.96 107.76 19618000000 1838800000 1668100000 1661800000 54816000 63322000 55187000 1313500000 1349700000 1290100000 16600000 15258000 14642000 1559800000 1409100000 1451300000 215720000 169460000 189400000 1695500000 1752600000 1771300000 19733000 23111000 19070000 12171 728 11860 228276;228277;228278;228279;228280;228281;228282;228283;228284;228285;228286;228287;228288;228289;228290;228291;228292;228293;228294;228295;228296;228297;228298;228299 139757;139758;139759;139760;139761;139762;139763;139764;139765;139766;139767;139768;139769;139770;139771;139772;139773;139774;139775;139776;139777;139778;139779;139780;139781;139782;139783;139784;139785;139786;139787;139788;139789;139790;139791;139792;139793;139794;139795;139796;139797;139798;139799;139800;139801;139802;139803;139804;139805;139806;139807 139789 51 LEYDPNR Unmodified 905.4243 0.42429566 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.335 14.933 2 0.0026472 3854 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 111.28 94.352 3895100000 460210000 392690000 408200000 22771000 21555000 26317000 162550000 158470000 146340000 39438000 36236000 34032000 208330000 210330000 201750000 43332000 28429000 31006000 390690000 366760000 364010000 54543000 44712000 42438000 12172 1620 11861 228300;228301;228302;228303;228304;228305;228306;228307;228308;228309;228310;228311;228312;228313;228314;228315;228316;228317;228318;228319;228320;228321;228322;228323 139808;139809;139810;139811;139812;139813;139814;139815;139816;139817;139818;139819;139820;139821;139822;139823;139824;139825;139826;139827;139828 139808 21 LEYEFPDR Unmodified 1067.4924 0.49237523 185 P08337 mutT 8-oxo-dGTP diphosphatase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.244 27.988 2 0.00093078 12902 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 117.1 116.45 104650000 5298600 4361900 5921600 0 0 0 8071400 7211800 7912100 0 0 0 9279000 10034000 8514900 0 0 0 12161000 13876000 12005000 0 0 0 12173 185 11862 228324;228325;228326;228327;228328;228329;228330;228331;228332;228333;228334;228335 139829;139830;139831;139832;139833;139834;139835 139831 7 LEYLMAMMESEIDLLQVEKR Unmodified 2440.2052 0.20519003 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 55.037 55.093 3 1.9212E-17 21543 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 147.53 118.64 131040000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32496000 45728000 52820000 0 0 0 0 0 0 12174 536 11863 228336;228337;228338 139836 139836 0 LEYQWTNNIGDAHTIGTRPDNGMLSLGVSYR Unmodified 3477.6736 0.67355085 480 P0A910 ompA Outer membrane protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 1 1 1 1 2 1 2 44.278 42.59 3;4 9.8185E-33 16763 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 186.43 184.69 681650000 0 0 0 43149000 40363000 40750000 11309000 13213000 12205000 84986000 70240000 104080000 0 0 0 29251000 25350000 26676000 0 0 3343300 53924000 46739000 76076000 12175 480 11864 228339;228340;228341;228342;228343;228344;228345;228346;228347;228348;228349;228350;228351;228352;228353;228354;228355;228356;228357;228358 139837;139838;139839;139840;139841;139842;139843;139844;139845;139846;139847;139848;139849;139850;139851;139852;139853 139849 17 LEYSDVK Unmodified 852.4229 0.42289868 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.228 15.533 2 0.0067291 4272 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.262 77.335 306740000 13196000 0 0 0 0 0 4963800 0 0 27371000 19382000 15828000 93745000 98456000 0 10760000 6861100 6591800 0 0 0 3217600 3323800 3046200 12176 25 11865 228359;228360;228361;228362;228363;228364;228365;228366;228367;228368;228369;228370;228371 139854;139855;139856;139857;139858 139854 5 LEYVDNFDNLEDIFFK Unmodified 2019.9466 0.94657403 1775 P75809 ybjI Flavin mononucleotide phosphatase YbjI yes yes 0 0 0 By MS/MS 1 55.484 54.094 2 0.00064298 25596 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.214 91.712 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12177 1775 11866 228372 139859 139859 1 LFAAAGQK Unmodified 804.44939 0.4493882 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.1 14.847 2 0.0012626 4791 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.54 60.83 1927900000 182860000 0 163870000 0 0 0 205590000 221170000 194290000 2188000 0 0 145560000 133210000 129540000 0 0 0 183420000 169900000 195090000 0 1215900 0 12178 295 11867 228373;228374;228375;228376;228377;228378;228379;228380;228381;228382;228383;228384;228385;228386 139860;139861;139862;139863;139864;139865;139866;139867 139865 6 LFAAGNLPSKPVWLEQVHGK Unmodified 2190.195 0.19495842 1430 P33644 yfiH Laccase domain protein YfiH yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 1 37.016 35.337 3;4 7.8047E-05 16915 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.809 70.886 584720000 58819000 56131000 70423000 0 0 0 55640000 47440000 50814000 0 0 0 31709000 33778000 33914000 0 0 0 56478000 48779000 40793000 0 0 0 12179 1430 11868 228387;228388;228389;228390;228391;228392;228393;228394;228395;228396;228397;228398;228399;228400;228401;228402;228403;228404;228405;228406;228407;228408;228409 139868;139869;139870;139871;139872;139873;139874;139875 139874 8 LFAAYAR Unmodified 810.43882 0.43882351 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.686 21.733 2 0.00084899 8518 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 143.22 136.84 173200000 11706000 7774600 7899500 0 0 0 16732000 20605000 16882000 0 0 0 14869000 13945000 10785000 0 0 0 18518000 16701000 16785000 0 0 0 12180 1482 11869 228410;228411;228412;228413;228414;228415;228416;228417;228418;228419;228420;228421 139876;139877;139878;139879;139880;139881;139882;139883;139884;139885;139886;139887 139885 12 LFADAFSK Unmodified 897.45962 0.45961853 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.304 29.963 2 0.0010836 14368 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 111.82 89.363 745410000 29906000 24755000 20242000 0 2823500 5154600 72326000 69356000 81037000 12312000 0 9901800 49162000 45970000 45028000 1720700 954590 1727400 90671000 83405000 78302000 8383900 6536700 5739100 12181 648 11870 228422;228423;228424;228425;228426;228427;228428;228429;228430;228431;228432;228433;228434;228435;228436;228437;228438;228439;228440;228441;228442;228443 139888;139889;139890;139891;139892;139893;139894;139895;139896;139897;139898;139899 139890 12 LFADAFSKDPDFYAFIR Unmodified 2021.9887 0.98871362 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 53.01 51.728 2;3 4.7619E-10 18800 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 117.4 116.71 583200000 6113600 6322000 0 44101000 38749000 37291000 10448000 12073000 9794000 61240000 62390000 60690000 7189400 7102500 5621300 11742000 10296000 11660000 12387000 11598000 13940000 50864000 47537000 44053000 12182 648 11871 228444;228445;228446;228447;228448;228449;228450;228451;228452;228453;228454;228455;228456;228457;228458;228459;228460;228461;228462;228463;228464;228465;228466;228467;228468;228469;228470;228471;228472;228473;228474;228475 139900;139901;139902;139903;139904;139905;139906;139907;139908;139909;139910;139911;139912;139913;139914;139915 139912 13 LFAEGFLVTEIAK Unmodified 1436.7915 0.79151736 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.004 50.869 2 4.904E-06 20237 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 151.15 121.67 910930000 52388000 52441000 43622000 14994000 15587000 11983000 64655000 60175000 61161000 34350000 32867000 29098000 57466000 56538000 45175000 17864000 9427700 11079000 57757000 63815000 63879000 14582000 19910000 20118000 12183 1050 11872 228476;228477;228478;228479;228480;228481;228482;228483;228484;228485;228486;228487;228488;228489;228490;228491;228492;228493;228494;228495;228496;228497;228498;228499 139916;139917;139918;139919;139920;139921;139922;139923;139924;139925;139926;139927;139928;139929;139930;139931;139932;139933;139934;139935;139936;139937;139938;139939;139940 139928 24 LFAEMGFK Unmodified 941.46807 0.46807473 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.032 34.476 2 0.0018523 16576 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 105.39 95.084 792840000 62222000 59463000 53888000 0 0 0 64240000 54502000 69126000 0 0 0 66313000 78520000 76443000 0 0 0 71633000 71617000 64869000 0 0 0 12184 1956 11873 228500;228501;228502;228503;228504;228505;228506;228507;228508;228509;228510;228511 139941;139942;139943;139944;139945;139946;139947;139948;139949;139950;139951;139952 139944 12 LFAEQVR Unmodified 861.47085 0.47085192 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 1 2 2 1 2 2 1 1 1 2 2 2 1 1 1 19.315 19.645 2 4.9636E-05 5823 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 177.54 99.789 46455000000 951420000 957210000 769380000 5532400000 5043700000 5728000000 1528800000 1630500000 1501000000 469580000 499840000 479590000 870810000 798930000 751280000 163860000 123200000 127480000 1580000000 1501600000 1443900000 4810800000 4595100000 4596400000 12185 939 11874 228512;228513;228514;228515;228516;228517;228518;228519;228520;228521;228522;228523;228524;228525;228526;228527;228528;228529;228530;228531;228532;228533;228534;228535;228536;228537;228538;228539;228540;228541;228542;228543;228544 139953;139954;139955;139956;139957;139958;139959;139960;139961;139962;139963;139964;139965;139966;139967;139968;139969;139970;139971;139972;139973;139974;139975;139976;139977;139978;139979;139980;139981;139982;139983;139984 139968 32 LFAGAGIVPASSPLGEWR Unmodified 1826.9679 0.9679186 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 51.38 50.2 2 0.00011316 23676 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.39 96.109 181910000 4282000 4999300 3623900 0 0 0 0 0 0 0 0 0 11950000 15994000 15541000 0 0 0 45225000 46151000 34141000 0 0 0 12186 865 11875 228545;228546;228547;228548;228549;228550;228551;228552;228553 139985;139986;139987;139988 139988 0 LFAGNATPELAQR Unmodified 1386.7256 0.72556306 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.734 27.435 2 4.7229E-24 12863 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 239.39 228.86 7626000000 818880000 705780000 567010000 21538000 26719000 27020000 473210000 489230000 454160000 31091000 23526000 20724000 576950000 574780000 610310000 44743000 26643000 27926000 628100000 714800000 582400000 59547000 62691000 58186000 12187 300 11876 228554;228555;228556;228557;228558;228559;228560;228561;228562;228563;228564;228565;228566;228567;228568;228569;228570;228571;228572;228573;228574;228575;228576;228577 139989;139990;139991;139992;139993;139994;139995;139996;139997;139998;139999;140000;140001;140002;140003;140004;140005;140006;140007;140008;140009;140010;140011;140012 139997 24 LFAGQIDR Unmodified 918.49232 0.49231565 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 2 2 2 3 3 2 2 2 2 3 3 3 2 2 2 24.35 23.785 2 0.00045123 6329 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 138.33 121.41 13614000000 128600000 125020000 112730000 1401000 1310200 1649900 134730000 124930000 131880000 1645000000 1644700000 1331400000 138830000 134060000 117750000 1676600000 1426200000 1386900000 176580000 179090000 172360000 828030000 948040000 1046300000 12188 1616 11877 228578;228579;228580;228581;228582;228583;228584;228585;228586;228587;228588;228589;228590;228591;228592;228593;228594;228595;228596;228597;228598;228599;228600;228601;228602;228603;228604;228605;228606;228607;228608;228609;228610;228611;228612;228613;228614;228615;228616;228617;228618;228619;228620;228621;228622;228623;228624;228625;228626;228627;228628;228629;228630;228631;228632;228633 140013;140014;140015;140016;140017;140018;140019;140020;140021;140022;140023;140024;140025;140026;140027;140028;140029;140030;140031;140032;140033;140034;140035;140036;140037;140038;140039;140040;140041;140042;140043 140015 30 LFAIMQLPVADINAQNAIMHDGK Unmodified 2509.2821 0.28213522 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 3 3 3 1 1 53.177 51.743 2;3;4 1.3245E-35 25635 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 168.81 168.3 9991500000 952570000 975620000 889220000 3256900 3736700 4961700 735320000 838920000 801770000 2216600 1697200 1414600 616960000 671500000 578840000 0 0 0 933710000 967140000 1007600000 2218400 0 2770300 12189 954 11878 228634;228635;228636;228637;228638;228639;228640;228641;228642;228643;228644;228645;228646;228647;228648;228649;228650;228651;228652;228653;228654;228655;228656;228657;228658;228659;228660;228661;228662;228663;228664;228665;228666;228667;228668;228669;228670;228671;228672;228673;228674;228675;228676;228677 140044;140045;140046;140047;140048;140049;140050;140051;140052;140053;140054;140055;140056;140057;140058;140059;140060;140061;140062;140063;140064;140065;140066;140067;140068;140069;140070;140071;140072;140073;140074;140075 140046 32 LFAIMQLPVADINAQNAIMHDGK Oxidation (M) 2525.277 0.27704984 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 51.632 50.437 3 6.5616E-05 24357 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 69.27 66.469 1177800000 122200000 137520000 0 1449200 1188300 0 0 0 0 0 0 0 247060000 276640000 222530000 0 0 0 0 20136000 149050000 0 0 0 12190 954 11878 228678;228679;228680;228681;228682;228683;228684;228685;228686 140076;140077;140078 140077 451 2 LFALDAASGK Unmodified 991.53385 0.53384611 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.069 29.473 2 0.00038397 13811 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 106.6 78.177 208700000 18621000 16275000 14811000 4479400 4390300 5094900 13620000 14139000 15177000 4761700 6814500 5681500 9529300 8305900 8127600 0 0 0 14821000 15958000 17563000 3603700 3355000 3573900 12191 1115 11879 228687;228688;228689;228690;228691;228692;228693;228694;228695;228696;228697;228698;228699;228700;228701;228702;228703;228704;228705;228706;228707 140079;140080;140081;140082;140083;140084;140085;140086;140087;140088;140089;140090;140091;140092;140093;140094;140095;140096 140086 18 LFALTTK Unmodified 792.47454 0.47454032 1023 P0AGJ7 trmL tRNA (cytidine(34)-2'-O)-methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.279 26.131 2 0.0012711 11854 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.96 101.66 140770000 11541000 12984000 12100000 0 0 0 10864000 11000000 10735000 0 0 0 13816000 10349000 9108900 0 0 0 14130000 12390000 11753000 0 0 0 12192 1023 11880 228708;228709;228710;228711;228712;228713;228714;228715;228716;228717;228718;228719 140097;140098;140099;140100;140101;140102;140103;140104;140105;140106 140102 10 LFAMATELR Unmodified 1050.5532 0.55320134 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1 1 1 1 1 1 1 1 32.849 31.566 2;3 2.2879E-08 16634 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 223.53 198.9 734410000 219250000 168930000 51536000 0 0 0 30882000 32645000 24868000 0 0 0 31448000 28364000 31574000 0 0 0 31626000 40281000 42299000 0 0 707560 12193 232 11881 228720;228721;228722;228723;228724;228725;228726;228727;228728;228729;228730;228731;228732;228733;228734 140107;140108;140109;140110;140111;140112;140113;140114;140115;140116;140117;140118;140119 140110 13 LFAMDHYADKPDLMTMAK Unmodified 2096.9733 0.9733396 1592 P50457 puuE 4-aminobutyrate aminotransferase PuuE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 36.363 35.023 4 0.0022269 16779 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.712 53.184 60103000 22458000 20029000 17616000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12194 1592 11882 228735;228736;228737 140120;140121;140122 140121 3 LFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVK Unmodified 4190.0743 0.074257521 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.674 49.318 4 8.0994E-13 24036 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 97.539 96.2 223900000 16601000 22467000 19432000 0 0 0 16873000 19297000 16182000 0 0 0 9494500 13862000 12784000 0 0 0 29719000 24156000 23030000 0 0 0 12195 691 11883 228738;228739;228740;228741;228742;228743;228744;228745;228746;228747;228748;228749 140123;140124 140124 2 LFASHSTIELPK Unmodified 1341.7293 0.72925145 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.736 25.629 3 2.6429E-05 11418 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.65 102.88 157290000 26839000 19499000 20155000 0 0 0 5654400 6538500 6917900 3249200 2359500 2266000 7645700 0 0 1125000 799230 1185500 19801000 16554000 16705000 0 0 0 12196 544 11884 228750;228751;228752;228753;228754;228755;228756;228757;228758;228759;228760;228761;228762;228763;228764;228765 140125;140126;140127;140128;140129;140130 140130 6 LFAVDQR Unmodified 847.4552 0.45520186 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.455 21.735 2 0.0015084 8349 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.75 85.982 2378600000 359020000 364250000 352810000 905370 946110 921010 267790000 300550000 301830000 0 0 0 68682000 53245000 50805000 0 0 0 86421000 88847000 81208000 0 384270 0 12197 401 11885 228766;228767;228768;228769;228770;228771;228772;228773;228774;228775;228776;228777;228778;228779;228780;228781 140131;140132;140133;140134;140135;140136;140137;140138;140139;140140;140141;140142 140141 12 LFCTLGGNIETVAIDGDFDACQALVK Unmodified 2826.3568 0.35681631 52 P00934 thrC Threonine synthase yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 54.332 52.961 3 1.17E-05 25957 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.617 83.403 89246000 0 0 36009000 0 0 0 0 0 0 0 0 0 0 20742000 0 0 0 0 0 32495000 0 0 0 0 12198 52 11886 228782;228783;228784 140143 140143 1 LFDAHVVYEAENETPLLYIDR Unmodified 2506.238 0.23800503 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 52.298 51.054 3 8.7785E-07 24969 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.201 86.579 317830000 95081000 89304000 76313000 0 0 2308400 4429000 6468300 5272400 0 0 0 4955200 4856000 6773700 0 0 0 7116300 8587000 6361000 0 0 0 12199 225 11887 228785;228786;228787;228788;228789;228790;228791;228792;228793;228794;228795;228796;228797 140144;140145;140146;140147 140145 3 LFDDAGLILVDFK Unmodified 1464.7864 0.78643198 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 55.112 53.648 2 5.9647E-08 26649 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.51 93.223 1076500000 260470000 227150000 189330000 0 1928200 0 41038000 43342000 44082000 0 0 0 36965000 31112000 34321000 0 0 0 49100000 60389000 57272000 0 0 0 12200 334 11888 228798;228799;228800;228801;228802;228803;228804;228805;228806;228807;228808;228809;228810 140148;140149;140150;140151;140152;140153;140154;140155;140156;140157;140158 140149 11 LFDLGQVPK Unmodified 1015.5702 0.57023162 1673 P64467 cnu OriC-binding nucleoid-associated protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.591 35.913 2 0.0052602 16573 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 75.109 61.53 386780000 33129000 28156000 34871000 319050 0 390040 38067000 33824000 33831000 0 0 0 28251000 27639000 27132000 0 0 0 35155000 34366000 31655000 0 0 0 12201 1673 11889 228811;228812;228813;228814;228815;228816;228817;228818;228819;228820;228821;228822;228823;228824 140159;140160;140161;140162;140163;140164;140165;140166;140167;140168;140169;140170 140170 12 LFDSIDAWR Unmodified 1121.5506 0.55055881 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 44.095 42.662 2 1.7675E-05 20662 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 157.34 136.89 88341000 13654000 11979000 10211000 0 0 0 4803900 0 0 0 0 0 8115800 6135300 5948400 0 0 0 8428000 10602000 8464000 0 0 0 12202 134 11890 228825;228826;228827;228828;228829;228830;228831;228832;228833;228834 140171;140172;140173;140174;140175;140176;140177;140178;140179 140173 9 LFDSLAK Unmodified 792.43815 0.43815481 53 P00935 metB Cystathionine gamma-synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 1 2 2 1 1 24.491 23.695 2 0.0063618 11437 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 95.793 46.945 339370000 11175000 9617100 8588700 0 0 0 20230000 17721000 84542000 0 0 0 5133700 6091600 62324000 0 0 0 98892000 8057600 6997500 0 0 0 12203 53 11891 228835;228836;228837;228838;228839;228840;228841;228842;228843;228844;228845;228846;228847;228848;228849 140180;140181;140182;140183;140184;140185;140186;140187;140188;140189 140183 10 LFDTNGDGK Unmodified 965.44543 0.44542503 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.935 16.75 2 1.4852E-05 5718 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.11 136.58 939880000 82692000 85177000 72805000 0 0 0 90544000 88258000 80008000 0 0 0 57350000 44564000 43445000 0 0 0 103430000 91673000 99932000 0 0 0 12204 954 11892 228850;228851;228852;228853;228854;228855;228856;228857;228858;228859;228860;228861 140190;140191;140192;140193;140194;140195;140196;140197;140198;140199;140200;140201 140198 12 LFDWGGAENLAYATLVDEGIPVR Unmodified 2505.254 0.25398944 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 55.565 54.099 2;3 4.3533E-44 26664 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 305.4 291.99 2278300000 71672000 208340000 174650000 0 0 0 98353000 91810000 86423000 4901200 1381800 6508900 184940000 168790000 173290000 0 0 0 338470000 289470000 307900000 25880000 22027000 23555000 12205 937 11893 228862;228863;228864;228865;228866;228867;228868;228869;228870;228871;228872;228873;228874;228875;228876;228877;228878;228879;228880;228881;228882;228883;228884;228885;228886;228887;228888;228889;228890;228891;228892;228893 140202;140203;140204;140205;140206;140207;140208;140209;140210;140211 140205 9 LFDYLFTHR Unmodified 1210.6135 0.61349341 103 P04995 sbcB Exodeoxyribonuclease I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 41.63 39.938 2;3 2.1137E-05 20039 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 149.94 145.29 204250000 21062000 22581000 19001000 0 0 0 14263000 18078000 17227000 0 0 0 19040000 10769000 11703000 0 0 0 14304000 18412000 17812000 0 0 0 12206 103 11894 228894;228895;228896;228897;228898;228899;228900;228901;228902;228903;228904;228905;228906;228907;228908;228909;228910;228911;228912;228913;228914;228915;228916 140212;140213;140214;140215;140216;140217;140218;140219;140220;140221;140222;140223;140224 140212 12 LFDYLTDTGNLPR Unmodified 1523.762 0.76200815 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 46.363 44.701 2;3 2.8602E-17 22222 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 250.75 209.21 4262600000 40707000 42366000 43932000 1642500 1782000 2259800 653190000 589720000 588890000 243620000 224460000 209230000 242430000 249050000 235530000 0 0 0 252310000 271550000 230680000 48389000 45907000 44982000 12207 501 11895 228917;228918;228919;228920;228921;228922;228923;228924;228925;228926;228927;228928;228929;228930;228931;228932;228933;228934;228935;228936;228937;228938;228939;228940;228941;228942;228943;228944;228945;228946;228947;228948;228949;228950;228951;228952;228953;228954;228955;228956;228957 140225;140226;140227;140228;140229;140230;140231;140232;140233;140234;140235;140236;140237;140238;140239;140240;140241;140242;140243;140244;140245;140246;140247;140248;140249;140250;140251;140252;140253;140254;140255;140256;140257 140232 33 LFEAAAQCSGILAGCTPEEEK Unmodified 2280.0402 0.040233195 769 P0AD57 ispB Octaprenyl-diphosphate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.315 37.642 2 1.575E-34 18409 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 273.38 272.08 189430000 18234000 12046000 13737000 0 0 0 18987000 15256000 18187000 0 0 0 13328000 10652000 7046500 0 0 0 17284000 19630000 25046000 0 0 0 12208 769 11896 228958;228959;228960;228961;228962;228963;228964;228965;228966;228967;228968;228969 140258;140259;140260;140261;140262;140263;140264 140260 7 LFEAVGLHDDVVGLCFQGAVSR Unmodified 2388.1896 0.18961504 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.773 48.372 3 8.2408E-22 23796 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.71 127.11 410620000 42845000 37471000 29562000 0 0 0 48993000 58343000 49430000 0 0 0 31115000 29536000 26029000 0 0 0 22788000 16140000 18366000 0 0 0 12209 218 11897 228970;228971;228972;228973;228974;228975;228976;228977;228978;228979;228980;228981 140265;140266;140267;140268;140269;140270;140271;140272 140269 8 LFEGSENFK Unmodified 1069.508 0.50802529 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.31 23.46 2 3.0058E-06 9861 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 148.04 86.685 977110000 127170000 103340000 0 0 0 0 1519800 169870000 0 0 0 0 0 0 133970000 0 318900 0 152230000 144820000 143870000 0 0 0 12210 1716 11898 228982;228983;228984;228985;228986;228987;228988;228989;228990;228991;228992;228993;228994 140273;140274;140275;140276;140277;140278;140279;140280;140281;140282;140283 140281 11 LFEGSENFKR Unmodified 1225.6091 0.60913632 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 17.765 18.29 2;3 1.8482E-06 6866 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 164.53 143.03 596550000 30613000 28295000 22200000 2914900 2667900 3300100 60736000 59534000 54838000 33806000 26987000 30352000 35179000 34067000 30369000 0 0 0 41892000 41968000 49320000 4080900 3427500 0 12211 1716 11899 228995;228996;228997;228998;228999;229000;229001;229002;229003;229004;229005;229006;229007;229008;229009;229010;229011;229012;229013;229014;229015;229016;229017;229018;229019;229020;229021;229022;229023;229024;229025;229026;229027;229028;229029;229030;229031 140284;140285;140286;140287;140288;140289;140290;140291;140292;140293;140294;140295;140296;140297;140298 140291 15 LFEGTASQMYQSLK Unmodified 1601.7759 0.77594365 708 P0AC84 gloB Hydroxyacylglutathione hydrolase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 38.706 36.832 2 5.0872E-08 18167 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 175.15 146.95 214490000 63481000 0 49651000 0 0 0 35908000 33972000 31475000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12212 708 11900 229032;229033;229034;229035;229036 140299 140299 1 LFELGAR Unmodified 804.44939 0.4493882 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 28.301 27.206 2 0.0019075 9387 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 121.68 59.687 67995000 5590200 5125400 5564600 0 0 0 0 4049700 3388700 780740 0 0 31239000 3257400 3268600 3592400 0 2139100 0 0 0 0 0 0 12213 1845 11901 229037;229038;229039;229040;229041;229042;229043;229044;229045;229046;229047 140300 140300 1 LFESSGCAGK Unmodified 1054.4753 0.47534495 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.244 14.808 2 0.00062856 3922 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 90.657 71.169 440850000 25491000 19546000 18527000 0 0 0 63819000 64265000 61493000 13392000 12126000 11113000 20388000 19982000 18856000 1283900 815660 763840 27770000 30161000 28450000 0 0 2607300 12214 122 11902 229048;229049;229050;229051;229052;229053;229054;229055;229056;229057;229058;229059;229060;229061;229062;229063;229064;229065;229066 140301;140302;140303;140304;140305;140306;140307;140308;140309;140310;140311;140312 140303 12 LFETSENGLDYFTSVPAR Unmodified 2044.9742 0.97418577 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 1 2 2 49.144 47.735 2;3 2.8126E-55 23064 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 280.96 262.82 469520000 11423000 8789500 7104700 15850000 15283000 14889000 5824300 30836000 28081000 27689000 18719000 25744000 28496000 26710000 26826000 0 0 0 38860000 47991000 39669000 12662000 17656000 20420000 12215 1427 11903 229067;229068;229069;229070;229071;229072;229073;229074;229075;229076;229077;229078;229079;229080;229081;229082;229083;229084;229085;229086;229087;229088;229089;229090;229091;229092;229093;229094;229095;229096;229097;229098;229099;229100;229101;229102 140313;140314;140315;140316;140317;140318;140319;140320;140321;140322;140323;140324;140325;140326;140327;140328;140329;140330;140331;140332;140333 140324 19 LFEVEVEVVNTLVVK Unmodified 1715.9709 0.97093829 822 P0ADZ0 rplW 50S ribosomal protein L23 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.038 53.574 2 8.6737E-12 26363 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 173.72 147.6 324440000 50373000 2718900 52170000 3549800 2246600 1984900 25113000 34004000 25072000 4129600 5931000 5196000 0 0 14395000 0 0 0 30106000 32503000 27950000 2819600 2386400 1796000 12216 822 11904 229103;229104;229105;229106;229107;229108;229109;229110;229111;229112;229113;229114;229115;229116;229117;229118;229119;229120;229121 140334;140335;140336;140337;140338 140335 4 LFFESSLVR Unmodified 1096.5917 0.59169534 465 P0A8W0 nanR Transcriptional regulator NanR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.161 40.295 2 0.00062155 19741 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.29 119.29 99491000 7682400 11018000 11917000 517190 472510 426580 8402800 9683900 5601400 2935000 2613700 2396100 5008900 4254100 4575000 0 0 0 5733700 8589300 6141200 1521400 0 0 12217 465 11905 229122;229123;229124;229125;229126;229127;229128;229129;229130;229131;229132;229133;229134;229135;229136;229137;229138;229139;229140 140339;140340;140341;140342;140343;140344;140345;140346;140347 140344 8 LFGGQHLVIAQQSLDR Unmodified 1780.9584 0.95841654 1936 P77739 yniA Uncharacterized protein YniA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 1 1 1 1 32.426 31.073 2;3 1.4666E-13 14705 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 208.51 203.02 572670000 105160000 95296000 85213000 0 0 0 64235000 56138000 60160000 0 0 0 22554000 21549000 24013000 0 0 0 14051000 12565000 11729000 0 0 0 12218 1936 11906 229141;229142;229143;229144;229145;229146;229147;229148;229149;229150;229151;229152;229153;229154;229155;229156;229157;229158;229159;229160 140348;140349;140350;140351;140352;140353;140354;140355;140356;140357;140358 140354 11 LFGKPEIDGSR Unmodified 1217.6404 0.64043645 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 1 1 2 2 2 18.887 19.479 2;3 0.00020837 7357 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.64 116.94 649100000 197030000 196130000 165840000 0 0 0 4572100 7914300 7546500 0 0 0 12849000 7352500 7590200 0 0 0 15348000 14549000 12388000 0 0 0 12219 1412 11907 229161;229162;229163;229164;229165;229166;229167;229168;229169;229170;229171;229172;229173;229174;229175;229176;229177;229178;229179 140359;140360;140361;140362;140363;140364 140359 6 LFGLTIDPER Unmodified 1159.6237 0.62372375 414 P0A8A4 ppsR Phosphoenolpyruvate synthase regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 46.015 44.3 2 2.1569E-05 21695 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.5 104.62 80246000 0 0 0 0 0 0 17816000 19368000 20661000 0 0 0 0 0 0 0 0 0 0 22400000 0 0 0 0 12220 414 11908 229180;229181;229182;229183;229184;229185;229186;229187;229188;229189;229190 140365;140366;140367;140368;140369;140370;140371;140372;140373;140374;140375 140371 11 LFGSIGTR Unmodified 849.47085 0.47085192 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 24.757 23.757 1;2 9.5323E-05 10603 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 162.07 123.86 7343800000 955790000 915230000 795080000 35361000 30246000 35032000 297260000 288840000 242640000 48464000 46611000 40217000 436780000 396060000 352470000 29419000 24387000 25597000 648610000 778870000 756520000 58908000 50242000 55124000 12221 364 11909 229191;229192;229193;229194;229195;229196;229197;229198;229199;229200;229201;229202;229203;229204;229205;229206;229207;229208;229209;229210;229211;229212;229213;229214;229215;229216;229217;229218;229219;229220;229221;229222;229223;229224;229225;229226;229227;229228;229229;229230;229231;229232;229233;229234;229235;229236;229237 140376;140377;140378;140379;140380;140381;140382;140383;140384;140385;140386;140387;140388;140389;140390;140391;140392;140393;140394;140395;140396;140397;140398 140386 23 LFGVGTGMGLR Unmodified 1106.5906 0.59064948 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.836 38.16 2 4.0076E-14 19070 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.09 135.82 747100000 149800000 143160000 136880000 384340 0 0 29037000 27553000 26434000 0 0 0 31041000 27755000 27887000 0 0 0 48155000 50068000 48946000 0 0 0 12222 887 11910 229238;229239;229240;229241;229242;229243;229244;229245;229246;229247;229248;229249;229250 140399;140400;140401;140402;140403;140404;140405;140406;140407;140408;140409;140410 140399 12 LFGVTTLDIIR Unmodified 1246.7285 0.72852317 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 51.668 50.537 2 9.3019E-07 18162 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 156.94 152.49 17706000000 2493600000 2673500000 2563200000 10930000 10550000 9162400 1354500000 1275100000 1327500000 2593000 2095600 2974600 767960000 750290000 729600000 3364300 2266000 2180700 1253000000 1246700000 1219800000 0 2368400 2645300 12223 1642 11911 229251;229252;229253;229254;229255;229256;229257;229258;229259;229260;229261;229262;229263;229264;229265;229266;229267;229268;229269;229270;229271;229272;229273;229274;229275 140411;140412;140413;140414;140415;140416;140417;140418;140419;140420;140421;140422;140423;140424;140425;140426;140427;140428;140429;140430;140431;140432;140433;140434;140435;140436;140437 140426 27 LFHEAVGLTGITLTK Unmodified 1598.9032 0.90319307 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 3 1 2 2 2 38.104 36.383 2;3 4.0334E-15 17963 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 192.15 177.91 600430000 86846000 84387000 72792000 8169400 6975200 7578300 20349000 22304000 21495000 34388000 29160000 32699000 12069000 11873000 11764000 5460200 7576400 7716700 17069000 23784000 17072000 20523000 21015000 17368000 12224 1052 11912 229276;229277;229278;229279;229280;229281;229282;229283;229284;229285;229286;229287;229288;229289;229290;229291;229292;229293;229294;229295;229296;229297;229298;229299;229300;229301;229302;229303;229304;229305;229306;229307;229308;229309;229310;229311;229312;229313 140438;140439;140440;140441;140442;140443;140444;140445;140446;140447;140448;140449;140450;140451;140452;140453;140454;140455;140456;140457;140458;140459;140460 140443 23 LFHFILDVASGK Unmodified 1345.7394 0.73942221 1543 P39829 garD D-galactarate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.723 42.208 3 5.1302E-05 20551 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 90.913 87.794 96229000 10472000 9638800 8256900 0 0 0 11147000 9470300 7509400 0 0 0 7410900 6860600 6544000 0 0 0 4951200 7316300 6652600 0 0 0 12225 1543 11913 229314;229315;229316;229317;229318;229319;229320;229321;229322;229323;229324;229325 140461;140462;140463;140464 140463 4 LFHTVMLFDVPVMTR Unmodified 1804.9368 0.93681816 1698 P64612 zapE Cell division protein ZapE yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.693 50.432 3 4.8768E-06 24739 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.759 83.701 100240000 11912000 10994000 10331000 0 0 0 7341400 5914500 5686700 0 0 0 5750300 4441200 4107200 0 0 0 7815600 9242000 8406200 0 3715200 4577500 12226 1698 11914 229326;229327;229328;229329;229330;229331;229332;229333;229334;229335;229336;229337;229338;229339 140465 140465 1 LFIAGWTR Unmodified 962.53379 0.53378653 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.732 38.058 2 0.0003557 18360 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.85 136.44 650210000 81083000 63768000 69775000 0 0 0 67644000 56189000 59627000 0 0 0 35230000 34240000 30336000 0 0 0 50985000 49614000 51720000 0 0 0 12227 1233 11915 229340;229341;229342;229343;229344;229345;229346;229347;229348;229349;229350;229351 140466;140467;140468;140469;140470;140471;140472;140473;140474;140475;140476;140477 140471 12 LFIDNFDK Unmodified 1010.5073 0.50729701 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 38.017 36.337 2 0.0001799 17523 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 154.01 147.19 3539800000 458330000 460270000 401720000 0 324670 0 275350000 306140000 310940000 0 0 0 209060000 166440000 181000000 0 0 0 290900000 240490000 238790000 0 0 0 12228 1195 11916 229352;229353;229354;229355;229356;229357;229358;229359;229360;229361;229362;229363;229364 140478;140479;140480;140481;140482;140483;140484 140480 7 LFIDNFDKYTDTPAGAALVAAGPK Unmodified 2494.2744 0.27439053 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 3 3 2 2 3 2 2 2 50.075 48.662 2;3;4 6.411E-97 23942 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 326.62 323 1127800000 49600000 53729000 41785000 1820800 2220700 0 210610000 225510000 213100000 0 0 0 19779000 17458000 206830000 0 0 0 25262000 28431000 31661000 0 0 0 12229 1195 11917 229365;229366;229367;229368;229369;229370;229371;229372;229373;229374;229375;229376;229377;229378;229379;229380;229381;229382;229383;229384;229385;229386;229387;229388;229389;229390;229391;229392;229393 140485;140486;140487;140488;140489;140490;140491;140492;140493;140494;140495;140496;140497;140498;140499;140500 140494 16 LFIFSSQPER Unmodified 1222.6346 0.63462279 1066 P11071 aceK Isocitrate dehydrogenase kinase/phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 38.253 36.801 2 5.6617E-05 17703 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.48 99.034 35775000 11011000 13157000 9673600 0 0 0 0 0 0 0 0 0 0 0 1934200 0 0 0 0 0 0 0 0 0 12230 1066 11918 229394;229395;229396;229397 140501;140502;140503 140503 3 LFIVQAR Unmodified 845.51232 0.51232281 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 31.253 29.855 2 0.00084899 11550 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 143.22 115.91 2085500000 150800000 144810000 153050000 0 0 0 208660000 212280000 234280000 4459500 4298800 4736300 153780000 172650000 156350000 790940 432630 752930 167820000 157760000 157210000 597000 0 0 12231 1210 11919 229398;229399;229400;229401;229402;229403;229404;229405;229406;229407;229408;229409;229410;229411;229412;229413;229414;229415;229416;229417;229418;229419;229420;229421;229422;229423;229424;229425;229426;229427;229428;229429;229430;229431 140504;140505;140506;140507;140508;140509;140510;140511;140512;140513;140514;140515;140516;140517;140518;140519;140520;140521;140522;140523;140524;140525;140526;140527;140528 140523 25 LFIVQARPETVR Unmodified 1427.8249 0.82488317 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 2 2 2 26.224 25.071 2;3 6.5581E-06 8060 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 109.6 106.65 3210400000 304260000 266840000 265130000 44126000 44038000 37698000 206190000 204060000 176720000 70367000 70116000 64992000 148100000 161530000 140920000 17581000 18871000 13702000 274480000 262740000 268300000 44901000 52140000 52567000 12232 1210 11920 229432;229433;229434;229435;229436;229437;229438;229439;229440;229441;229442;229443;229444;229445;229446;229447;229448;229449;229450;229451;229452;229453;229454;229455;229456;229457;229458;229459;229460;229461;229462;229463;229464;229465;229466;229467;229468;229469;229470;229471;229472;229473;229474;229475;229476;229477 140529;140530;140531;140532;140533;140534;140535;140536;140537;140538;140539;140540;140541;140542;140543;140544;140545;140546;140547;140548;140549;140550;140551;140552;140553;140554;140555;140556;140557;140558;140559;140560;140561;140562;140563;140564;140565 140529 37 LFLCCADNLISGNAFK Unmodified 1841.8804 0.8804255 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 50.961 49.69 2;3 1.6331E-18 24438 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 244.71 219.86 1963000000 159290000 161830000 142140000 2142200 384860 1804500 167120000 133450000 125280000 0 0 0 176660000 177810000 176740000 0 0 0 175760000 182010000 177870000 2662600 0 0 12233 1456 11921 229478;229479;229480;229481;229482;229483;229484;229485;229486;229487;229488;229489;229490;229491;229492;229493;229494;229495;229496;229497;229498;229499;229500;229501;229502;229503;229504;229505;229506 140566;140567;140568;140569;140570;140571;140572;140573;140574;140575;140576;140577;140578;140579;140580;140581;140582;140583;140584;140585;140586;140587;140588 140570 23 LFLEESFAAGLHALK Unmodified 1644.8875 0.88754301 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 2 1 1 1 1 2 2 2 3 2 3 2 3 2 48.779 47.375 3 7.4586E-09 18721 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 117.92 115.85 1252100000 166640000 190410000 143000000 6640400 6412900 4683500 121690000 107210000 108270000 11978000 14269000 14814000 44091000 41811000 46867000 0 0 0 80178000 78692000 64468000 0 0 0 12234 1211 11922 229507;229508;229509;229510;229511;229512;229513;229514;229515;229516;229517;229518;229519;229520;229521;229522;229523;229524;229525;229526;229527;229528;229529;229530;229531;229532;229533;229534;229535;229536;229537;229538;229539;229540;229541 140589;140590;140591;140592;140593;140594;140595;140596;140597;140598;140599;140600;140601;140602;140603;140604;140605;140606;140607;140608;140609;140610;140611;140612;140613;140614;140615;140616;140617;140618;140619 140591 31 LFLGHGAEVYEGQIIGIHSR Unmodified 2195.1487 0.14873651 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 36.379 34.822 3;4 2.0255E-23 16035 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 188.96 185.01 5305300000 308410000 300350000 285690000 5771900 5017900 6350100 501190000 505850000 546640000 7859400 7007400 7224100 415280000 437850000 427660000 5080500 4757200 5376200 557530000 527710000 421350000 4541400 5356000 5450700 12235 1388 11923 229542;229543;229544;229545;229546;229547;229548;229549;229550;229551;229552;229553;229554;229555;229556;229557;229558;229559;229560;229561;229562;229563;229564;229565;229566;229567;229568;229569;229570;229571;229572;229573;229574;229575;229576;229577 140620;140621;140622;140623;140624;140625;140626;140627;140628;140629;140630;140631;140632;140633;140634;140635;140636;140637;140638;140639;140640;140641;140642;140643;140644;140645;140646;140647;140648;140649;140650;140651;140652;140653 140651 34 LFLMSDAVTAGLR Unmodified 1392.7435 0.74352131 629 P0AB52 ychN Protein YchN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 49.704 48.298 2 2.6673E-12 23708 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187.64 173.44 1038400000 93637000 82030000 80813000 442840 0 0 130780000 125030000 130580000 0 0 0 69184000 60399000 55093000 0 0 0 91623000 63433000 55377000 0 0 0 12236 629 11924 229578;229579;229580;229581;229582;229583;229584;229585;229586;229587;229588;229589;229590 140654;140655;140656;140657;140658;140659;140660;140661;140662;140663;140664;140665 140660 8 LFLPGVGTAQAAMDQVR Unmodified 1772.9243 0.92433922 1624 P60595 hisH Imidazole glycerol phosphate synthase subunit HisH yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 48.238 46.894 2;3 1.2753E-10 23202 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 185.25 174.04 312350000 37829000 32599000 27163000 0 0 0 26784000 25773000 22335000 0 0 0 23751000 23089000 15165000 0 0 0 26733000 22677000 28456000 0 0 0 12237 1624 11925 229591;229592;229593;229594;229595;229596;229597;229598;229599;229600;229601;229602;229603;229604;229605;229606;229607;229608;229609;229610;229611;229612;229613;229614 140666;140667;140668;140669;140670;140671;140672;140673;140674;140675;140676;140677 140668 12 LFLSILR Unmodified 860.54837 0.54837396 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 45.92 44.434 2 0.0006586 21607 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.28 125.24 40318000 7174400 6350100 5377000 991830 731030 828300 3623000 3699300 0 0 0 0 0 0 2451100 0 0 0 2557900 3117100 3416800 0 0 0 12238 1295 11926 229615;229616;229617;229618;229619;229620;229621;229622;229623;229624;229625;229626;229627 140678;140679;140680;140681 140680 4 LFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQR Unmodified 4046.0915 0.091502986 1710 P67095 yfcE Phosphodiesterase YfcE yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 2 3 3 2 1 2 3 2 3 3 1 2 45.371 43.971 4;5;6 5.5903E-18 21377 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.08 129.77 956050000 125050000 171080000 127810000 0 0 0 43696000 33617000 47165000 0 0 0 66437000 62018000 57754000 0 0 0 91793000 47956000 81680000 0 0 0 12239 1710 11927 229628;229629;229630;229631;229632;229633;229634;229635;229636;229637;229638;229639;229640;229641;229642;229643;229644;229645;229646;229647;229648;229649;229650;229651;229652;229653;229654 140682;140683;140684 140683 3 LFLTKPLGIGVLTTAEK Unmodified 1800.0761 0.076072062 1119 P16456 selD Selenide, water dikinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 44.477 42.965 2;3 1.7772E-13 21374 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 177.63 177.63 1740700000 139260000 141250000 122110000 3460800 2770100 3415200 212040000 22963000 199720000 21866000 19224000 17688000 131260000 109420000 107400000 8863400 9585800 9764900 149110000 150300000 139810000 8050400 4718700 6627800 12240 1119 11928 229655;229656;229657;229658;229659;229660;229661;229662;229663;229664;229665;229666;229667;229668;229669;229670;229671;229672;229673;229674;229675;229676;229677;229678;229679;229680;229681;229682;229683;229684;229685;229686;229687;229688;229689;229690;229691 140685;140686;140687;140688;140689;140690;140691;140692;140693;140694;140695;140696;140697;140698;140699;140700;140701;140702;140703;140704;140705;140706;140707;140708;140709;140710;140711;140712;140713 140691 27 LFLTKPLGIGVLTTAEKK Unmodified 1928.171 0.17103508 1119 P16456 selD Selenide, water dikinase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 38.87 36.764 3;4 1.8751E-06 14681 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 90.972 90.972 124650000 0 0 0 8828400 7531100 7230800 0 0 0 21520000 21854000 27923000 0 0 0 0 0 0 0 0 0 12053000 8826900 8879600 12241 1119 11929 229692;229693;229694;229695;229696;229697;229698;229699;229700;229701;229702;229703;229704;229705;229706;229707;229708;229709 140714;140715;140716;140717;140718;140719;140720;140721;140722 140715 9 LFMDAVK Unmodified 822.43096 0.43096094 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.518 27.271 2 0.020298 12593 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 76.847 66.54 209290000 13957000 12214000 11100000 0 0 0 20232000 20252000 21077000 0 0 0 16003000 17882000 18508000 0 0 0 19531000 18320000 20216000 0 0 0 12242 1575 11930 229710;229711;229712;229713;229714;229715;229716;229717;229718;229719;229720;229721 140723;140724;140725;140726;140727;140728;140729;140730 140724 8 LFNDDYFQPLR Unmodified 1426.6881 0.68811492 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 45.701 44.253 2 0.0017534 20830 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 78.334 57.634 62484000 9087700 7870500 9631000 0 0 0 6586900 3958000 5726600 0 0 0 4445500 2742000 3438000 0 0 0 0 4734900 4263300 0 0 0 12243 1830 11931 229722;229723;229724;229725;229726;229727;229728;229729;229730;229731;229732 140731;140732;140733 140732 0 LFNECADFR Unmodified 1170.5128 0.51279309 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.876 27.572 2 0.00020056 12108 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 126.52 126.52 798350000 65790000 69833000 55712000 0 0 0 74191000 78807000 66638000 1228600 1371700 1390800 50068000 50895000 52115000 799650 556200 0 76887000 76733000 74482000 0 0 858260 12244 787 11932 229733;229734;229735;229736;229737;229738;229739;229740;229741;229742;229743;229744;229745;229746;229747;229748;229749;229750 140734;140735;140736;140737;140738 140738 5 LFNELGPR Unmodified 944.50797 0.50796571 984 P0AG44 rplQ 50S ribosomal protein L17 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 27.8 26.538 2 3.7226E-05 8374 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 173.59 132.09 7234200000 836990000 875520000 869780000 40760000 35398000 40909000 332240000 304170000 314700000 58426000 62519000 55637000 474870000 415070000 410140000 0 39088000 0 619100000 636110000 624080000 58232000 64615000 65822000 12245 984 11933 229751;229752;229753;229754;229755;229756;229757;229758;229759;229760;229761;229762;229763;229764;229765;229766;229767;229768;229769;229770;229771;229772;229773;229774;229775;229776;229777 140739;140740;140741;140742;140743;140744;140745;140746;140747;140748;140749;140750;140751;140752;140753;140754;140755;140756;140757;140758;140759;140760 140739 22 LFNHLENNQSQSNGGYPPYNVELVDENHYR Unmodified 3546.6189 0.61887274 1033 P0C054 ibpA Small heat shock protein IbpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 35.66 33.7 4 5.9773E-08 13121 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 94.275 93.744 69549000 0 0 0 2313300 3229000 3176400 0 0 0 10357000 12733000 13762000 0 0 0 0 0 0 2795500 0 3706900 6234700 6661500 4579000 12246 1033 11934 229778;229779;229780;229781;229782;229783;229784;229785;229786;229787;229788 140761;140762;140763;140764;140765;140766;140767;140768;140769 140763 9 LFNLPFNMNTFHQMWGVK Unmodified 2223.0758 0.075771261 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.382 52.952 3 1.3543E-09 25960 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 112.8 108.54 796710000 58923000 59620000 55017000 0 0 0 52299000 0 35068000 0 0 0 70225000 76650000 73178000 0 0 0 126930000 84853000 103950000 0 0 0 12247 1491 11935 229789;229790;229791;229792;229793;229794;229795;229796;229797;229798;229799 140770;140771;140772;140773;140774;140775;140776 140772 7 LFNLVQPDIACFGEK Unmodified 1749.876 0.87599205 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.681 50.434 2;3 1.5297E-08 24885 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 167.3 153.39 1694500000 224100000 208330000 198850000 0 0 0 132980000 125280000 115550000 0 0 0 126250000 120750000 109590000 0 0 0 117210000 102840000 112760000 0 0 0 12248 1375 11936 229800;229801;229802;229803;229804;229805;229806;229807;229808;229809;229810;229811;229812;229813;229814;229815;229816;229817;229818;229819;229820;229821;229822;229823 140777;140778;140779;140780;140781;140782;140783;140784;140785;140786;140787;140788;140789 140778 13 LFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAR Unmodified 4002.0276 0.027565325 128 P06715 gor Glutathione reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.622 46.224 4;5 4.4468E-29 23025 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 168.48 167.03 1878800000 164930000 174920000 169270000 0 0 0 190870000 144610000 190570000 0 0 0 132390000 133520000 115810000 0 0 0 139980000 154620000 167280000 0 0 0 12249 128 11937 229824;229825;229826;229827;229828;229829;229830;229831;229832;229833;229834;229835;229836;229837;229838;229839;229840;229841;229842;229843;229844;229845;229846;229847 140790;140791;140792;140793;140794;140795;140796;140797;140798;140799;140800;140801;140802 140790 13 LFNQNSSLFDEIR Unmodified 1581.7787 0.77872084 1206 P23331 tdk Thymidine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 44.551 43.006 2 1.7932E-32 20987 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 218.11 201.08 284530000 46797000 39084000 0 0 0 0 0 55144000 47538000 0 0 0 0 40900000 0 0 0 0 0 55064000 0 0 0 0 12250 1206 11938 229848;229849;229850;229851;229852;229853;229854;229855;229856;229857;229858 140803;140804;140805;140806;140807;140808;140809;140810;140811;140812 140804 10 LFPEITIK Unmodified 959.56917 0.56916898 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.848 38.167 2 0.013351 18636 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.616 58.395 125960000 8812200 8211100 7390200 0 0 0 8844100 6535100 7168800 3496800 2415500 3102100 7131200 6838900 7018600 0 1081800 1936000 13481000 13182000 14442000 1561900 1651100 1657600 12251 1932 11939 229859;229860;229861;229862;229863;229864;229865;229866;229867;229868;229869;229870;229871;229872;229873;229874;229875;229876;229877;229878 140813;140814;140815 140813 3 LFPFFGFTAENIVAK Unmodified 1699.8974 0.89737941 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.214 53.741 2;3 2.1226E-07 26651 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 131.83 109.83 1672800000 338650000 301660000 293230000 0 0 0 176500000 154790000 161430000 0 0 0 35261000 37378000 33307000 0 0 0 53411000 42452000 44746000 0 0 0 12252 1423 11940 229879;229880;229881;229882;229883;229884;229885;229886;229887;229888;229889;229890;229891;229892;229893;229894;229895;229896;229897;229898;229899;229900;229901;229902 140816;140817;140818;140819;140820;140821;140822;140823;140824 140818 8 LFPNANWYER Unmodified 1308.6251 0.62512073 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.228 36.588 2 5.5379E-05 16999 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 150.28 138.23 363310000 0 0 0 5507200 4728800 5075700 24138000 23526000 27689000 20366000 17916000 18257000 20625000 19129000 18643000 5609100 3669300 3804100 35820000 34661000 32565000 14638000 13155000 13789000 12253 1426 11941 229903;229904;229905;229906;229907;229908;229909;229910;229911;229912;229913;229914;229915;229916;229917;229918;229919;229920;229921;229922;229923 140825;140826;140827;140828;140829;140830;140831;140832;140833;140834;140835;140836;140837;140838;140839;140840;140841;140842;140843;140844;140845 140843 21 LFQLIIEDSVLTQQALLQQHLNK Unmodified 2691.496 0.49595105 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 1 1 1 2 2 2 2 2 2 54.482 53.081 3;4 1.5691E-35 26327 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 212.35 209.87 957740000 250510000 236220000 246460000 2982000 1715600 2918600 12175000 0 12319000 0 0 0 36985000 29316000 31768000 0 0 0 35399000 30855000 28115000 0 0 0 12254 529 11942 229924;229925;229926;229927;229928;229929;229930;229931;229932;229933;229934;229935;229936;229937;229938;229939;229940;229941;229942;229943;229944;229945;229946 140846;140847;140848;140849;140850 140847 5 LFRPFIPPVVDGK Unmodified 1483.8551 0.85512067 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 40.218 38.561 3 0.0014032 18695 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 65.295 63.926 53629000 4660200 4511400 4276000 0 0 0 0 3671100 0 0 1184800 0 4925600 5247300 3760000 0 0 0 6429500 7188500 7774500 0 0 0 12255 1171 11943 229947;229948;229949;229950;229951;229952;229953;229954;229955;229956;229957 140851;140852 140852 2 LFSALVNYR Unmodified 1081.592 0.59202969 230 P0A6C8 argB Acetylglutamate kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.044 35.141 2 0.012093 16833 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 76.774 51.851 30153000 4748900 6176000 0 0 1196200 1378400 2929200 0 2807200 2525300 2390000 1828500 821160 1296300 0 0 0 0 0 0 0 0 876610 1178800 12256 230 11944 229958;229959;229960;229961;229962;229963;229964;229965;229966;229967;229968;229969;229970 140853 140853 1 LFSFNNPAGACPTCDGLGVQQYFDPDR Unmodified 3045.3385 0.33854048 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 53.445 52.909 3 2.0728E-07 19904 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 97.057 97.053 74946000 0 0 0 0 0 0 0 0 0 0 3711700 4305800 0 0 0 27151000 20158000 19620000 0 0 0 0 0 0 12257 222 11945 229971;229972;229973;229974;229975 140854;140855;140856 140856 3 LFSGMQR Unmodified 837.41671 0.41670786 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 18.479 18.798 2 0.0021402 7039 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 117.56 98.897 183970000 0 7988500 8463400 2604700 0 0 0 19902000 24527000 7473800 7753100 6466300 12008000 15267000 0 3882500 0 2347800 19932000 16092000 19705000 2925200 3884400 2749700 12258 1304 11946 229976;229977;229978;229979;229980;229981;229982;229983;229984;229985;229986;229987;229988;229989;229990;229991;229992;229993;229994 140857;140858;140859;140860;140861;140862 140859 2 LFSNLRPAK Unmodified 1044.608 0.60801411 1336 P30125 leuB 3-isopropylmalate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 16.886 17.585 2 0.00077158 6194 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.03 84.087 260060000 88879000 93070000 78112000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12259 1336 11947 229995;229996;229997 140863;140864;140865 140864 3 LFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTK Unmodified 3954.039 0.038981634 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 2 1 2 1 2 54.591 53.138 4;5 1.9942E-22 26088 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 144.55 144.02 2108200000 542370000 565480000 568920000 0 0 1265300 122690000 103930000 105630000 0 0 0 16877000 5303200 0 0 0 0 32383000 17993000 25389000 0 0 0 12260 1373 11948 229998;229999;230000;230001;230002;230003;230004;230005;230006;230007;230008;230009;230010;230011;230012;230013;230014;230015;230016;230017;230018 140866;140867;140868;140869;140870;140871;140872;140873 140873 8 LFSVPNPGAADDFLSVINPESLVIK Unmodified 2641.4003 0.40031933 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 2 2 2 1 2 2 2 1 55.678 54.268 2;3 7.0651E-15 25714 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 176.81 170.64 2135200000 181950000 147690000 168810000 0 826080 0 145660000 141790000 141610000 0 0 187170 180300000 195190000 178080000 0 4756900 0 192910000 229080000 224340000 0 0 2016500 12261 63 11949 230019;230020;230021;230022;230023;230024;230025;230026;230027;230028;230029;230030;230031;230032;230033;230034;230035;230036;230037;230038;230039;230040;230041;230042;230043;230044;230045;230046 140874;140875;140876;140877;140878;140879;140880;140881;140882;140883;140884;140885;140886;140887;140888;140889;140890;140891;140892;140893;140894;140895;140896 140896 22 LFTHINLHFIVTGR Unmodified 1666.9307 0.93074523 816 P0ADX1 yhfA Protein YhfA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 39.241 37.567 3;4 9.4199E-06 18098 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 96.414 83.242 283830000 25955000 26595000 25493000 0 0 0 35006000 24225000 27104000 0 0 0 15597000 17091000 15218000 0 0 0 26875000 23060000 21605000 0 0 0 12262 816 11950 230047;230048;230049;230050;230051;230052;230053;230054;230055;230056;230057;230058;230059;230060;230061;230062;230063;230064;230065;230066;230067;230068;230069;230070 140897;140898;140899;140900;140901;140902;140903;140904;140905;140906;140907;140908;140909;140910;140911;140912 140904 12 LFTLDELIR Unmodified 1118.6336 0.63356015 1490 P37745 rfbC dTDP-4-dehydrorhamnose 3,5-epimerase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 52.724 51.422 2 5.2467E-05 25109 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 148.38 101.96 964740000 60851000 0 48105000 0 0 0 100480000 92063000 0 0 0 0 0 96763000 108530000 0 0 0 172490000 150890000 134590000 0 0 0 12263 1490 11951 230071;230072;230073;230074;230075;230076;230077;230078;230079 140913;140914;140915;140916;140917;140918;140919 140914 2 LFTLNTGHAITAYLGK Unmodified 1718.9356 0.93555583 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.018 39.352 2;3 7.7596E-31 19701 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 238.47 207.59 972880000 72864000 65626000 65714000 0 0 0 153850000 111320000 132210000 0 0 0 66315000 68887000 63123000 0 0 0 60488000 56714000 55770000 0 0 0 12264 214 11952 230080;230081;230082;230083;230084;230085;230086;230087;230088;230089;230090;230091;230092;230093;230094;230095;230096;230097;230098;230099;230100;230101;230102;230103 140920;140921;140922;140923;140924;140925;140926;140927;140928;140929;140930;140931;140932;140933;140934;140935;140936;140937 140920 18 LFTRARPESQELNILR Unmodified 1942.0748 0.074843283 825 P0AE01 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ yes yes 0 0 2 By matching By MS/MS By MS/MS 1 1 1 24.452 22.904 5 0.15265 8118 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 16.886 14.969 11300000 0 0 0 0 0 0 0 0 0 4094200 4247700 2957700 0 0 0 0 0 0 0 0 0 0 0 0 12265 825 11953 230104;230105;230106 140938;140939 140938 0 LFVAVCR Unmodified 863.46874 0.46874343 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.25 24.375 2 7.4284E-05 10837 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.84 101.97 3279600000 349040000 328210000 330950000 0 0 0 284450000 260300000 248210000 0 0 0 268660000 266960000 229430000 8810900 9401100 7099100 337680000 350430000 0 0 0 0 12266 793 11954 230107;230108;230109;230110;230111;230112;230113;230114;230115;230116;230117;230118;230119;230120;230121 140940;140941;140942;140943;140944;140945;140946;140947;140948;140949;140950;140951 140945 12 LFVEPNPIPVK Unmodified 1251.7227 0.72270951 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 37.711 35.989 2 0.00015927 17987 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 109.71 97.867 1943200000 167930000 159350000 136420000 0 0 0 184510000 163920000 171900000 0 0 971640 142280000 134730000 137220000 0 0 0 180180000 182660000 181130000 0 0 0 12267 258 11955 230122;230123;230124;230125;230126;230127;230128;230129;230130;230131;230132;230133;230134 140952;140953;140954;140955;140956;140957;140958;140959;140960;140961;140962;140963 140952 12 LFVPLQAMPFIDGTEVDFVR Unmodified 2293.1817 0.18167612 1924 P77667 sufA Protein SufA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.721 54.28 3 0.0014928 20030 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 60.564 55.235 367570000 44329000 35429000 41594000 3700100 3712800 3226400 38549000 29535000 35916000 4189100 3311800 3969400 19327000 22488000 20866000 0 0 0 14950000 19704000 18030000 2203100 2537200 0 12268 1924 11956 230135;230136;230137;230138;230139;230140;230141;230142;230143;230144;230145;230146;230147;230148;230149;230150;230151;230152;230153;230154 140964 140964 1 LFVVDAFCGANPDTR Unmodified 1680.793 0.7929907 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 45.954 44.415 2;3 1.0791E-11 22070 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.11 202.69 4957300000 634270000 634870000 656900000 2071100 0 0 345510000 333840000 321920000 1919200 1573800 0 311870000 320460000 279460000 0 0 0 372890000 389010000 350750000 0 0 0 12269 1195 11957 230155;230156;230157;230158;230159;230160;230161;230162;230163;230164;230165;230166;230167;230168;230169;230170;230171;230172;230173;230174;230175;230176;230177;230178;230179;230180;230181 140965;140966;140967;140968;140969;140970;140971;140972;140973;140974;140975;140976;140977;140978;140979;140980;140981;140982;140983;140984;140985;140986;140987;140988;140989;140990 140966 25 LFWLSQTPFEQR Unmodified 1550.7882 0.78816332 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.3 51.052 2 3.1109E-17 25337 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 219.7 205.58 649090000 81083000 97174000 82030000 1532000 0 1231700 83874000 85662000 80682000 0 0 0 15210000 15549000 13270000 0 0 0 30729000 28535000 32530000 0 0 0 12270 1174 11958 230182;230183;230184;230185;230186;230187;230188;230189;230190;230191;230192;230193;230194;230195 140991;140992;140993;140994;140995;140996;140997;140998;140999 140991 6 LFWQLPGVYSTAAGYTGGYTPNPTYR Unmodified 2879.3919 0.39187991 309 P0A744 msrA Peptide methionine sulfoxide reductase MsrA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.446 53.017 3 1.8055E-15 25975 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 139.46 138.79 237860000 37847000 39245000 32480000 7793100 7169500 7455400 0 14207000 0 8873900 7817900 13191000 15094000 16656000 0 0 0 0 11078000 11073000 0 3733700 4147000 0 12271 309 11959 230196;230197;230198;230199;230200;230201;230202;230203;230204;230205;230206;230207;230208;230209;230210;230211 141000;141001;141002;141003 141003 4 LFYKPGACSLASHITLR Unmodified 1933.0244 0.024387617 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 30.817 29.374 2;3;4 9.4039E-07 13671 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 76.151 76.151 1689800000 218130000 202060000 269180000 1343600 1115600 1526700 184260000 163720000 156290000 0 0 0 89073000 64023000 57075000 0 0 0 71495000 86363000 66174000 15559000 20216000 22210000 12272 510 11960 230212;230213;230214;230215;230216;230217;230218;230219;230220;230221;230222;230223;230224;230225;230226;230227;230228;230229;230230;230231;230232;230233;230234;230235;230236;230237;230238;230239;230240;230241;230242;230243;230244;230245;230246;230247;230248 141004;141005;141006;141007;141008;141009;141010;141011;141012;141013;141014;141015;141016;141017;141018;141019;141020;141021;141022;141023;141024;141025;141026;141027 141021 19 LFYLISEDMTEPYEAR Unmodified 1975.9237 0.9237301 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 52.096 50.842 2;3 2.2358E-39 24656 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 261.72 243.1 2576700000 800810000 788290000 674700000 27589000 25604000 21981000 40173000 37466000 37382000 0 0 0 21724000 20916000 18700000 0 0 0 17511000 23597000 20289000 0 0 0 12273 921 11961 230249;230250;230251;230252;230253;230254;230255;230256;230257;230258;230259;230260;230261;230262;230263;230264;230265;230266;230267;230268;230269;230270;230271;230272;230273;230274;230275;230276 141028;141029;141030;141031;141032;141033;141034;141035;141036;141037;141038;141039;141040;141041;141042;141043 141039 16 LFYLISEDMTEPYEAR Oxidation (M) 1991.9186 0.91864472 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 47.382 46.11 2 1.8373E-06 22954 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.767 89.161 61986000 19956000 20164000 20753000 0 1113400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12274 921 11961 230277;230278;230279;230280;230281;230282;230283;230284;230285 141044;141045;141046;141047;141048;141049 141049 411 1 LFYNDFQADDADLSDYTNK Unmodified 2253.9702 0.9702226 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 46.991 45.429 2 1.5715E-09 18117 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 116.84 115.54 41331000 0 0 0 0 0 0 0 0 0 2641600 3286700 2465700 5507700 3024300 2526600 0 0 0 6459200 5819700 9600000 0 0 0 12275 486 11962 230286;230287;230288;230289;230290;230291;230292;230293;230294 141050 141050 1 LGAAGVVVAGSGVQAIFGTK Unmodified 1801.0098 0.0097834104 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 48.243 46.941 2;3 4.0854E-18 22858 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.98 154.36 833420000 24997000 22837000 21758000 7062300 18558000 19763000 79450000 75671000 63801000 0 0 49798000 64279000 59369000 50603000 4285100 3049700 0 52608000 62803000 75754000 26170000 25136000 25667000 12276 1742 11963 230295;230296;230297;230298;230299;230300;230301;230302;230303;230304;230305;230306;230307;230308;230309;230310;230311;230312;230313;230314;230315;230316;230317;230318;230319;230320;230321;230322;230323;230324;230325;230326;230327;230328;230329;230330;230331;230332 141051;141052;141053;141054;141055;141056;141057;141058;141059;141060;141061;141062;141063;141064;141065;141066;141067;141068;141069;141070;141071;141072;141073;141074 141059 23 LGAAVATLK Unmodified 842.52255 0.52255314 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.325 19.764 2 0.00031699 7475 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.37 67.615 1591100000 470160000 423080000 407440000 1099000 1010600 1102700 33685000 45118000 43174000 0 0 0 53150000 14535000 13853000 0 0 0 29924000 24734000 25362000 926990 1517000 1261300 12277 1925 11964 230333;230334;230335;230336;230337;230338;230339;230340;230341;230342;230343;230344;230345;230346;230347;230348;230349;230350 141075;141076;141077;141078;141079;141080;141081 141080 5 LGADAVIVHHGYFWK Unmodified 1711.8835 0.88346068 959 P0AFP6 ybgI Putative GTP cyclohydrolase 1 type 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 1 1 3 3 3 2 2 3 2 3 3 3 3 1 32.464 30.994 2;3;4 2.2888E-15 14458 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 196.88 157.26 3047600000 430070000 458960000 456060000 3379500 2927100 3108200 302910000 303750000 273210000 4773100 0 6066900 136820000 110080000 120150000 0 0 0 150440000 146840000 135630000 0 0 2397900 12278 959 11965 230351;230352;230353;230354;230355;230356;230357;230358;230359;230360;230361;230362;230363;230364;230365;230366;230367;230368;230369;230370;230371;230372;230373;230374;230375;230376;230377;230378;230379;230380;230381;230382;230383;230384;230385;230386;230387;230388;230389;230390;230391;230392;230393 141082;141083;141084;141085;141086;141087;141088;141089;141090;141091;141092;141093;141094;141095;141096;141097;141098;141099;141100;141101;141102 141096 21 LGADGDFAQGYVIAHEVGHHVQK Unmodified 2447.1982 0.1982059 1668 P64429 ypfJ Uncharacterized protein YpfJ yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 1 1 1 1 1 1 2 1 1 1 1 1 1 29.633 28.178 4;5 0.0037706 12934 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 51.175 47.96 175960000 15202000 33880000 31777000 1488800 658140 1199400 9413200 12043000 14214000 5397100 0 1612300 7559400 0 6094900 0 0 0 10825000 10436000 14153000 0 0 0 12279 1668 11966 230394;230395;230396;230397;230398;230399;230400;230401;230402;230403;230404;230405;230406;230407;230408;230409;230410;230411;230412 141103;141104 141104 2 LGADGNALFR Unmodified 1032.5352 0.53524309 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 3 2 1 1 1 3 3 2 3 3 3 1 2 1 29.95 28.518 2 1.9352E-12 12666 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 215.1 156.18 8341200000 979690000 928200000 892220000 6822600 6574500 7217200 402950000 393390000 373040000 3586300 2800800 2115200 448120000 400130000 418540000 0 0 0 1083300000 1008800000 963870000 6501500 8168700 5151600 12280 392 11967 230413;230414;230415;230416;230417;230418;230419;230420;230421;230422;230423;230424;230425;230426;230427;230428;230429;230430;230431;230432;230433;230434;230435;230436;230437;230438;230439;230440;230441;230442;230443;230444;230445;230446;230447;230448;230449;230450;230451;230452;230453;230454;230455;230456 141105;141106;141107;141108;141109;141110;141111;141112;141113;141114;141115;141116;141117;141118;141119;141120;141121;141122;141123;141124;141125;141126;141127;141128;141129 141126 21 LGADILR Unmodified 756.44939 0.4493882 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.171 24.161 2 0.00037797 10232 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 155.73 38.036 2723900000 246630000 291900000 242060000 0 0 0 223470000 259370000 220230000 0 0 0 183180000 161520000 135960000 0 0 0 264190000 243410000 252000000 0 0 0 12281 58 11968 230457;230458;230459;230460;230461;230462;230463;230464;230465;230466;230467;230468 141130;141131;141132;141133;141134;141135;141136;141137;141138;141139;141140;141141 141140 12 LGADVVGAIPHFEFTR Unmodified 1727.8995 0.89950468 1257 P25524 codA Cytosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 45.589 44.209 3 4.7161E-07 21520 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.932 85.72 206230000 62683000 73045000 69531000 0 0 967690 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12282 1257 11969 230469;230470;230471;230472 141142;141143;141144 141143 3 LGAEIIGTTLSGYTTPETPEEPDLALVK Unmodified 2914.5063 0.50630054 314 P0A761 nanE Putative N-acetylmannosamine-6-phosphate 2-epimerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.632 52.207 3 0.0020321 25689 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 47.507 45.552 110870000 17398000 15004000 16127000 0 0 0 3966600 5523000 0 0 0 0 9665000 10740000 9713500 0 0 0 7638800 6353600 8739000 0 0 0 12283 314 11970 230473;230474;230475;230476;230477;230478;230479;230480;230481;230482;230483 141145 141145 1 LGAEIVDLGKNALDK Unmodified 1554.8617 0.86172219 469 P0A8X0 yjgA UPF0307 protein YjgA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.233 48.826 2 0.11055 23701 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 40.715 29.182 1651800000 122150000 101650000 92482000 0 0 0 175900000 198790000 178770000 0 0 0 127780000 127230000 131730000 0 0 0 139370000 128020000 127940000 0 0 0 12284 469 11971 230484;230485;230486;230487;230488;230489;230490;230491;230492;230493;230494;230495 141146;141147;141148 141148 3 LGAENIFLGR Unmodified 1088.5978 0.59784335 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.22 36.446 2 3.6285E-12 14753 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 205.7 178.57 591520000 21422000 22812000 24274000 8720900 8655700 9142200 50564000 57888000 58051000 38602000 34731000 31096000 40240000 33640000 30765000 7252000 0 0 29379000 26208000 30293000 8842500 9179000 9763400 12285 33 11972 230496;230497;230498;230499;230500;230501;230502;230503;230504;230505;230506;230507;230508;230509;230510;230511;230512;230513;230514;230515;230516;230517 141149;141150;141151;141152;141153;141154;141155;141156;141157;141158;141159;141160;141161;141162;141163;141164;141165;141166 141149 14 LGAFFIR Unmodified 822.47521 0.47520902 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.2 36.341 2 0.00040886 17975 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.91 154.91 151890000 7882200 6105600 5196700 1251400 1038300 930620 13355000 12423000 15003000 3399000 3314800 2539300 10236000 10736000 10004000 0 0 0 14092000 13292000 14734000 2674600 1438800 2239200 12286 324 11973 230518;230519;230520;230521;230522;230523;230524;230525;230526;230527;230528;230529;230530;230531;230532;230533;230534;230535;230536;230537;230538 141167;141168;141169;141170;141171;141172;141173;141174;141175;141176;141177;141178;141179;141180;141181;141182;141183 141171 17 LGAFSVVEGK Unmodified 1005.5495 0.54949617 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.397 28.383 2 0.00051539 13179 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.033 62.738 596510000 30005000 29117000 22109000 0 0 0 8945000 6787700 7243700 0 0 0 130200000 115360000 111010000 2359400 2263900 1793600 44585000 45471000 39253000 0 0 0 12287 1513 11974 230539;230540;230541;230542;230543;230544;230545;230546;230547;230548;230549;230550;230551;230552;230553 141184;141185;141186;141187 141185 4 LGAIVQR Unmodified 755.46537 0.46537261 1369 P31473 ravA ATPase RavA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 2 2 1 1 1 1 1 14.603 15.314 2 0.0086334 5258 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.627 53.521 162970000 9603500 8188100 8608000 0 596510 0 88849000 19304000 17727000 1026500 0 0 0 1170300 984620 0 0 0 0 6911600 0 0 0 0 12288 1369 11975 230554;230555;230556;230557;230558;230559;230560;230561;230562;230563;230564;230565;230566 141188;141189 141189 2 LGALDYLFVSSKPFAEK Unmodified 1884.0033 0.003301049 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 49.34 48.71 2;3 9.3126E-09 18609 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 113.29 108.08 245340000 2006100 3039700 12512000 0 0 0 0 0 0 0 0 0 0 0 5587000 81160000 74402000 66637000 0 0 0 0 0 0 12289 456 11976 230567;230568;230569;230570;230571;230572;230573;230574 141190;141191;141192;141193;141194;141195 141190 6 LGALEER Unmodified 786.42357 0.42356738 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 2 1 1 1 1 1 2 1 2 1 1 1 14.432 15.135 2 0.00037797 4873 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.73 54.406 3756000000 159270000 231970000 187690000 0 513990 419830 393400000 422780000 419570000 1571900 1025200 878610 300340000 287860000 268430000 0 0 0 335570000 369590000 375080000 0 0 0 12290 441 11977 230575;230576;230577;230578;230579;230580;230581;230582;230583;230584;230585;230586;230587;230588;230589;230590;230591;230592;230593;230594;230595 141196;141197;141198;141199;141200;141201;141202;141203;141204 141199 9 LGALSAGDK Unmodified 830.44978 0.44978213 1202 P22939 ispA Farnesyl diphosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 13.7 14.586 2 0.00034096 4592 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.28 53.521 421800000 37592000 37249000 28553000 539030 0 629440 35524000 40300000 33398000 0 0 0 27497000 25710000 25618000 0 0 0 44472000 42894000 41820000 0 0 0 12291 1202 11978 230596;230597;230598;230599;230600;230601;230602;230603;230604;230605;230606;230607;230608;230609;230610 141205;141206;141207;141208;141209;141210;141211;141212;141213;141214;141215;141216 141207 12 LGAMATINQVIDQETAQLVAEEMGHK Unmodified 2796.3786 0.37861438 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.752 53.523 3 3.0451E-51 26515 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 244.95 238.65 1281100000 160060000 150220000 155140000 10761000 10473000 9312400 51333000 47153000 46802000 31231000 27366000 34004000 71484000 69994000 61314000 35779000 61517000 60912000 67999000 63095000 55169000 0 0 0 12292 297 11979 230611;230612;230613;230614;230615;230616;230617;230618;230619;230620;230621;230622;230623;230624;230625;230626;230627;230628;230629;230630;230631 141217;141218;141219;141220;141221;141222;141223;141224;141225;141226;141227;141228;141229;141230;141231;141232;141233;141234 141229 18 LGAMLDQK Unmodified 874.45824 0.45823833 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.955 18.465 2 0.0011037 6856 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 111.65 75.092 1621200000 83821000 91345000 84248000 0 0 0 189610000 181500000 187190000 0 695800 892060 123410000 129510000 116900000 0 0 0 146270000 154800000 129360000 0 790170 835850 12293 702 11980 230632;230633;230634;230635;230636;230637;230638;230639;230640;230641;230642;230643;230644;230645;230646;230647 141235;141236;141237;141238;141239;141240 141236 5 LGANPVPLQLAIGAEEHFTGVVDLVK Unmodified 2686.4694 0.46940194 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 2 2 1 3 3 3 1 1 1 3 3 5 4 3 3 1 1 1 55.032 53.595 2;3;4 4.2794E-52 26386 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 183.07 180.84 21551000000 1808500000 1867800000 1709100000 63075000 43667000 30285000 1752000000 1730300000 1632000000 22207000 22486000 20301000 1476800000 1508800000 1304800000 0 0 0 2274800000 2129200000 2102200000 19067000 17689000 16089000 12294 264 11981 230648;230649;230650;230651;230652;230653;230654;230655;230656;230657;230658;230659;230660;230661;230662;230663;230664;230665;230666;230667;230668;230669;230670;230671;230672;230673;230674;230675;230676;230677;230678;230679;230680;230681;230682;230683;230684;230685;230686;230687;230688;230689;230690;230691;230692;230693;230694;230695;230696;230697;230698;230699 141241;141242;141243;141244;141245;141246;141247;141248;141249;141250;141251;141252;141253;141254;141255;141256;141257;141258;141259;141260;141261;141262;141263;141264;141265;141266;141267;141268;141269;141270;141271;141272;141273;141274;141275;141276;141277;141278;141279;141280;141281;141282;141283;141284;141285;141286;141287;141288;141289;141290;141291;141292;141293;141294;141295;141296;141297;141298;141299;141300;141301;141302;141303;141304;141305;141306;141307;141308;141309;141310;141311;141312;141313;141314 141254 74 LGAQQCQLVDDSLVR Unmodified 1700.8516 0.85156821 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 1 1 2 2 2 33.838 32.339 2;3 9.2424E-21 14658 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 271.65 265.68 6789400000 365220000 367830000 318200000 1647800 4012000 3666600 557110000 550130000 545720000 6875200 5416800 4042800 593160000 555180000 590630000 3037700 0 2173200 757230000 807410000 750700000 0 0 0 12295 337 11982 230700;230701;230702;230703;230704;230705;230706;230707;230708;230709;230710;230711;230712;230713;230714;230715;230716;230717;230718;230719;230720;230721;230722;230723;230724;230725;230726;230727;230728;230729;230730;230731;230732 141315;141316;141317;141318;141319;141320;141321;141322;141323;141324;141325;141326;141327;141328;141329;141330;141331;141332;141333;141334;141335;141336;141337;141338;141339;141340;141341;141342;141343 141342 29 LGASGVVK Unmodified 729.43849 0.43848916 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.832 13.484 2 0.015552 3431 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 69.998 23.628 2640800000 307220000 0 0 5317300 5720100 4604800 342850000 390980000 316150000 27040000 29569000 28209000 195310000 184260000 192860000 0 0 1134000 191880000 179580000 205130000 11137000 11680000 10137000 12296 210 11983 230733;230734;230735;230736;230737;230738;230739;230740;230741;230742;230743;230744;230745;230746;230747;230748;230749;230750;230751;230752 141344;141345;141346;141347;141348;141349 141344 6 LGASLDGR Unmodified 787.41882 0.41881635 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 15.587 15.994 2 0.00012698 5402 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.77 62.732 169520000 0 0 0 0 0 0 67319000 70744000 0 2134900 2905300 0 0 0 26415000 0 0 0 0 0 0 0 0 0 12297 1262 11984 230753;230754;230755;230756;230757;230758;230759;230760;230761;230762 141350;141351;141352;141353;141354;141355 141353 6 LGASVVGFSDSANTSLGK Unmodified 1708.8632 0.86317875 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 1 1 1 1 1 1 1 1 1 1 1 2 35.331 33.89 2;3 6.0506E-17 16042 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 194.7 181.03 6391700000 2078700000 1907700000 1831000000 6960300 6875500 7223600 13313000 15463000 13716000 0 0 0 36981000 34328000 34984000 0 0 0 136560000 135980000 131900000 0 0 0 12298 318 11985 230763;230764;230765;230766;230767;230768;230769;230770;230771;230772;230773;230774;230775;230776;230777;230778;230779;230780;230781;230782;230783;230784;230785;230786 141356;141357;141358;141359;141360;141361;141362;141363;141364;141365;141366;141367;141368;141369;141370;141371;141372;141373;141374;141375;141376;141377;141378 141364 22 LGAVPGGTER Unmodified 955.50869 0.50869399 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.166 14.694 2 0.00029148 4650 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 112.84 86.24 2389800000 136490000 112840000 105010000 0 0 0 229750000 294190000 221330000 23969000 20216000 19709000 238160000 229200000 244500000 5615800 3205700 3601600 167890000 159140000 152710000 6767100 7965500 7562700 12299 1119 11986 230787;230788;230789;230790;230791;230792;230793;230794;230795;230796;230797;230798;230799;230800;230801;230802;230803;230804;230805;230806;230807 141379;141380;141381;141382;141383;141384;141385;141386;141387;141388;141389;141390;141391;141392;141393 141383 15 LGAWDTLSPK Unmodified 1086.571 0.5709599 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 33.743 32.504 2 3.776E-05 15366 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 141.52 106.71 398740000 134410000 139650000 124680000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12300 1464 11987 230808;230809;230810 141394;141395;141396 141395 3 LGCEVTEGK Unmodified 991.46445 0.46444592 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 12.287 13.183 2 0.00074014 3634 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 102.46 91.637 143200000 0 0 0 0 0 0 24816000 30812000 0 0 0 0 30188000 28222000 29159000 0 0 0 0 0 0 0 0 0 12301 161 11988 230811;230812;230813;230814;230815 141397;141398;141399;141400;141401 141399 4 LGCEVTEGKDEWQAVAPSWR Unmodified 2317.0797 0.079730244 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 37.554 35.837 2;3 4.5474E-68 16571 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 365.39 365.39 3669400000 402230000 333630000 326980000 2071700 0 0 211580000 227900000 183140000 2599300 2925100 3280300 319000000 299650000 299460000 3770700 0 0 349110000 361930000 336970000 0 0 3136500 12302 161 11989 230816;230817;230818;230819;230820;230821;230822;230823;230824;230825;230826;230827;230828;230829;230830;230831;230832;230833;230834;230835;230836;230837;230838;230839;230840;230841;230842;230843;230844;230845 141402;141403;141404;141405;141406;141407;141408;141409;141410;141411;141412;141413;141414;141415;141416;141417;141418;141419;141420;141421;141422;141423;141424;141425;141426 141426 25 LGCGAHVIYLR Unmodified 1257.6652 0.66521141 1618 P60340 truB tRNA pseudouridine synthase B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.206 21.918 3 8.8776E-05 9203 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.556 89.911 190270000 9971500 14188000 10894000 0 0 0 12797000 14717000 17979000 0 0 0 18443000 15441000 14776000 0 3280100 2816300 17571000 19877000 17517000 0 0 0 12303 1618 11990 230846;230847;230848;230849;230850;230851;230852;230853;230854;230855;230856;230857;230858;230859 141427;141428;141429 141429 2 LGCINVHGSLLPR Unmodified 1434.7766 0.77655277 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 29.287 28.048 2;3 1.369E-05 12848 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 131.12 123.47 815230000 79317000 64042000 62131000 0 0 358910 12666000 94786000 80233000 0 0 0 66324000 76050000 71629000 0 0 0 73316000 66098000 68277000 0 0 0 12304 1224 11991 230860;230861;230862;230863;230864;230865;230866;230867;230868;230869;230870;230871;230872;230873;230874;230875;230876;230877;230878;230879;230880;230881;230882;230883 141430;141431;141432;141433;141434;141435;141436;141437;141438;141439;141440;141441;141442;141443 141440 14 LGCVSIHLNHK Unmodified 1276.671 0.67102507 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 14.733 15.514 2;3 2.0723E-26 5140 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 254.82 229.69 1285500000 0 8626400 7260500 0 0 0 55563000 59549000 87371000 0 0 0 121730000 118750000 110980000 0 0 0 165760000 306980000 242960000 0 0 0 12305 1065 11992 230884;230885;230886;230887;230888;230889;230890;230891;230892;230893;230894;230895;230896;230897;230898;230899;230900;230901;230902;230903 141444;141445;141446;141447;141448;141449;141450;141451;141452;141453;141454;141455 141449 12 LGDASLSEGLEQHLLGLK Unmodified 1879.0051 0.005091963 871 P0AEM0 fkpB FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 46.681 45.272 2;3 7.0265E-29 22045 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 206.18 197.78 1850200000 170990000 160700000 150590000 838720 1217400 0 147400000 135830000 145600000 0 0 0 99811000 106870000 103370000 0 0 0 202410000 220710000 203870000 0 0 0 12306 871 11993 230904;230905;230906;230907;230908;230909;230910;230911;230912;230913;230914;230915;230916;230917;230918;230919;230920;230921;230922;230923;230924;230925;230926;230927;230928;230929 141456;141457;141458;141459;141460;141461;141462;141463;141464;141465;141466;141467;141468;141469;141470;141471;141472;141473;141474;141475;141476;141477;141478 141470 23 LGDDFVR Unmodified 820.40792 0.40791731 1135 P17115 gutQ Arabinose 5-phosphate isomerase GutQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.59 21.637 2 0.0006586 8339 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 148.28 119.75 320250000 25513000 21099000 17759000 0 0 0 25361000 23655000 26133000 0 0 0 31881000 26355000 25436000 0 0 0 33987000 32775000 30300000 0 0 0 12307 1135 11994 230930;230931;230932;230933;230934;230935;230936;230937;230938;230939;230940;230941 141479;141480;141481;141482;141483;141484;141485;141486;141487;141488;141489 141489 11 LGDDKQR Unmodified 830.42463 0.42463001 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 7.8757 8.4756 2 0.0041332 1693 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 113.08 52.323 74653000 280250 488630 609330 2521500 2727500 3224300 4002100 3130200 3494200 6542600 6482700 5842200 3253700 504450 0 3262800 1894000 1643000 814250 5060300 0 5954000 6360700 6560800 12308 1267 11995 230942;230943;230944;230945;230946;230947;230948;230949;230950;230951;230952;230953;230954;230955;230956;230957;230958;230959;230960;230961;230962;230963;230964;230965;230966 141490;141491;141492;141493;141494;141495 141491 6 LGDIEYR Unmodified 864.43413 0.43413207 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.6 19.877 2 0.00028714 5916 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 159.19 68.099 35821000000 952010000 981620000 897160000 17758000 16399000 16119000 5800400000 5630100000 5917100000 155920000 129940000 145590000 2999500000 3175200000 3250800000 37411000 28559000 31936000 1878200000 1870500000 1823700000 20479000 21380000 23431000 12309 1717 11996 230967;230968;230969;230970;230971;230972;230973;230974;230975;230976;230977;230978;230979;230980;230981;230982;230983;230984;230985;230986;230987;230988;230989;230990 141496;141497;141498;141499;141500;141501;141502;141503;141504;141505;141506;141507;141508;141509;141510;141511;141512;141513;141514;141515;141516;141517;141518;141519;141520;141521 141496 26 LGDIITYR Unmodified 949.52328 0.52328142 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 28.333 27.275 2 0.0063953 12903 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.997 79.21 2688000000 205290000 190840000 166520000 0 0 0 234390000 257180000 244270000 0 0 0 239830000 250120000 221290000 1300800 576480 0 226710000 233300000 216410000 0 0 0 12310 1456 11997 230991;230992;230993;230994;230995;230996;230997;230998;230999;231000;231001;231002;231003;231004;231005 141522;141523;141524;141525;141526;141527;141528;141529 141522 0 LGDLPTSGQIR Unmodified 1155.6248 0.62478638 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 5 4 3 1 1 1 2 2 2 25.421 24.607 2;3 1.9888E-05 8381 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 168.26 138.79 54820000000 593480000 519510000 439510000 27396000 29251000 32713000 337940000 371200000 331020000 3867700000 2886500000 3093800000 476830000 406530000 427770000 9454500000 7772800000 8088100000 500490000 600200000 548710000 4758500000 4435700000 4820300000 12311 463 11998 231006;231007;231008;231009;231010;231011;231012;231013;231014;231015;231016;231017;231018;231019;231020;231021;231022;231023;231024;231025;231026;231027;231028;231029;231030;231031;231032;231033;231034;231035;231036;231037;231038;231039;231040;231041;231042 141530;141531;141532;141533;141534;141535;141536;141537;141538;141539;141540;141541;141542;141543;141544;141545;141546;141547;141548;141549;141550;141551;141552;141553;141554;141555;141556;141557;141558;141559;141560;141561;141562;141563;141564;141565;141566;141567;141568;141569;141570;141571;141572;141573;141574;141575;141576;141577;141578;141579;141580;141581;141582;141583 141568 52 LGDMIDVALAISLHAPNDEIRDEIVPINKK Unmodified 3298.7595 0.75951231 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 2 By matching By MS/MS By MS/MS By matching 1 1 1 1 52.556 51.155 5 0.0016336 20799 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 50.144 48.376 20467000 0 0 2578900 0 0 0 0 0 0 7503700 0 5566700 0 0 0 0 0 0 0 0 0 4818100 0 0 12312 1451 11999 231043;231044;231045;231046 141584;141585 141584 2 LGDNADVIPGDSNDSSVLKK Unmodified 2043.012 0.012027834 1358 P31069 kch Voltage-gated potassium channel Kch yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.84 25.535 3 0.0064538 9282 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 43.696 39.977 90211000 6480400 6852800 6962400 2392900 2479800 2923900 7440300 4588400 10333000 3528900 3942900 3408400 4411600 3749700 5906600 0 0 0 0 6242700 4591900 1535900 0 2438400 12313 1358 12000 231047;231048;231049;231050;231051;231052;231053;231054;231055;231056;231057;231058;231059;231060;231061;231062;231063;231064;231065 141586;141587;141588 141588 3 LGDQVDGQRPLAVIHAK Unmodified 1815.9955 0.99553033 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 3 3 3 2 1 3 3 3 1 3 3 3 1 1 1 21.398 21.609 2;3;4 4.0747E-10 8973 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.11 147.41 4353200000 154020000 165230000 147370000 0 0 0 678790000 642130000 665790000 3120300 0 1544600 347270000 349730000 348180000 0 1155000 0 301590000 311820000 231420000 1781500 988260 1258000 12314 167 12001 231066;231067;231068;231069;231070;231071;231072;231073;231074;231075;231076;231077;231078;231079;231080;231081;231082;231083;231084;231085;231086;231087;231088;231089;231090;231091;231092;231093;231094;231095;231096;231097;231098;231099;231100;231101;231102;231103;231104;231105;231106;231107;231108 141589;141590;141591;141592;141593;141594;141595;141596;141597;141598;141599;141600;141601;141602;141603;141604;141605;141606;141607;141608;141609;141610;141611;141612;141613;141614;141615;141616;141617;141618;141619;141620 141594 32 LGDSELYDQSR Unmodified 1281.5837 0.58370943 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 21.325 21.364 2 0.0011168 8824 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 82.417 61.678 18209000 0 0 0 810590 0 0 7058000 6215400 4125300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12315 1664 12002 231109;231110;231111;231112 141621 141621 1 LGDWFAR Unmodified 863.42899 0.42898711 1752 P69831 gatC Galactitol permease IIC component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.485 33.048 2 0.00045564 16164 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.67 127.56 559270000 21281000 22845000 17074000 0 0 0 78717000 79656000 74290000 9010800 7044900 5917100 38453000 36999000 38454000 16616000 10912000 12877000 26992000 31967000 26792000 1814200 1557200 0 12316 1752 12003 231113;231114;231115;231116;231117;231118;231119;231120;231121;231122;231123;231124;231125;231126;231127;231128;231129;231130;231131;231132 141622;141623;141624;141625;141626;141627;141628;141629;141630;141631;141632;141633;141634;141635 141624 13 LGDWTFDER Unmodified 1137.5091 0.50908792 1847 P76290 cmoA tRNA (cmo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 35.948 34.455 2 0.0036935 16418 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 80.676 76.742 247740000 25092000 21760000 23869000 0 0 0 0 22826000 23141000 0 0 0 23905000 21347000 20878000 0 0 0 0 32752000 32173000 0 0 0 12317 1847 12004 231133;231134;231135;231136;231137;231138;231139;231140;231141;231142 141636;141637;141638 141638 3 LGEAMQAVQFGNPAER Unmodified 1716.8254 0.82535346 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 35.21 33.74 2;3 4.1424E-39 16131 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 253.54 238.66 4939500000 1180100000 1018500000 967180000 0 1817200 1725400 166360000 171700000 151190000 0 0 0 145700000 139190000 139980000 0 0 0 276560000 298200000 281330000 0 0 0 12318 1264 12005 231143;231144;231145;231146;231147;231148;231149;231150;231151;231152;231153;231154;231155;231156;231157;231158;231159;231160;231161;231162;231163;231164;231165;231166;231167;231168 141639;141640;141641;141642;141643;141644;141645;141646;141647;141648;141649;141650;141651;141652;141653 141645 14 LGEAMQAVQFGNPAER Oxidation (M) 1732.8203 0.82026808 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 1 0 By MS/MS By matching By matching 1 1 1 27.802 26.797 2 4.3278E-10 12180 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.33 132.64 22772000 0 10701000 9550700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2520800 0 0 0 0 0 12319 1264 12005 231169;231170;231171 141654 141654 522 1 LGEELDAAK Unmodified 944.48148 0.48147619 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 17.61 18.1 2 2.1326E-05 6716 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.39 92.633 2796200000 0 0 0 0 0 0 763250000 0 0 1576600 0 0 291270000 289550000 263140000 0 0 4037000 394720000 369070000 417610000 1936700 0 0 12320 441 12006 231172;231173;231174;231175;231176;231177;231178;231179;231180;231181;231182 141655;141656;141657;141658;141659;141660;141661 141656 2 LGEFAPTR Unmodified 889.46577 0.46576654 371 P0A7U3 rpsS 30S ribosomal protein S19 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.855 20.11 2 0.00022699 7666 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.29 109.99 7032300000 1021500000 927640000 910210000 23573000 18712000 24651000 294630000 278100000 277470000 53640000 56150000 44941000 375230000 383620000 364680000 32519000 21042000 24778000 652630000 568190000 589620000 29116000 31546000 28068000 12321 371 12007 231183;231184;231185;231186;231187;231188;231189;231190;231191;231192;231193;231194;231195;231196;231197;231198;231199;231200;231201;231202;231203;231204;231205;231206 141662;141663;141664;141665;141666;141667;141668;141669;141670;141671;141672;141673;141674;141675;141676;141677;141678;141679;141680 141676 19 LGEFDVLVGINLLR Unmodified 1556.8926 0.89262839 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.569 54.095 2 3.0305E-06 26668 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.6 116.81 129660000 19609000 21402000 15998000 0 0 0 12096000 10576000 12394000 0 0 0 6316700 5170200 5112900 0 0 0 6551900 7267400 7162200 0 0 0 12322 426 12008 231207;231208;231209;231210;231211;231212;231213;231214;231215;231216;231217;231218 141681 141681 1 LGEFTMPEHK Unmodified 1187.5645 0.56449431 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 21.8 21.732 2;3 0.013888 8866 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 57.149 56.913 858800000 105770000 107460000 77941000 0 0 0 68922000 71903000 68932000 935190 2049600 1248700 40614000 36806000 39811000 10412000 10796000 11009000 77059000 67048000 60083000 0 0 0 12323 731 12009 231219;231220;231221;231222;231223;231224;231225;231226;231227;231228;231229;231230;231231;231232;231233;231234;231235;231236;231237;231238;231239;231240;231241;231242;231243;231244;231245;231246;231247;231248 141682;141683;141684;141685;141686;141687;141688;141689;141690;141691;141692;141693;141694;141695;141696;141697 141691 14 LGEGDKVVSLIVPR Unmodified 1480.8613 0.86132826 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 1 2 2 2 2 1 2 2 2 1 1 2 1 2 2 2 2 36.801 35.107 2;3 1.2963E-10 13782 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 178.32 167.1 455260000 12489000 10806000 13303000 8171100 8404000 6586000 18427000 15021000 20708000 41944000 41989000 37701000 12019000 13908000 17934000 18117000 11283000 9722600 24279000 19475000 28104000 19902000 21490000 23480000 12324 882 12010 231249;231250;231251;231252;231253;231254;231255;231256;231257;231258;231259;231260;231261;231262;231263;231264;231265;231266;231267;231268;231269;231270;231271;231272;231273;231274;231275;231276;231277;231278;231279;231280;231281;231282;231283;231284;231285;231286;231287;231288;231289 141698;141699;141700;141701;141702;141703;141704;141705;141706;141707;141708;141709;141710;141711;141712;141713;141714 141705 16 LGEGVGELAR Unmodified 999.53491 0.53490874 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 22.689 22.068 2 1.1292E-06 7800 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 168.27 134.01 1852800000 58740000 62169000 62018000 0 0 0 236090000 233450000 210290000 14241000 13055000 12107000 161570000 145270000 161030000 0 0 0 152880000 165660000 160980000 0 3290100 0 12325 1468 12011 231290;231291;231292;231293;231294;231295;231296;231297;231298;231299;231300;231301;231302;231303;231304;231305;231306;231307 141715;141716;141717;141718;141719;141720;141721;141722;141723;141724;141725;141726;141727;141728;141729 141715 15 LGELAIVK Unmodified 841.5273 0.52730417 196 P09029 purK N5-carboxyaminoimidazole ribonucleotide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.299 27.061 2 0.055162 12234 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.687 11.885 376940000 106940000 122870000 90286000 0 0 0 5145600 6244600 5809700 0 0 0 5503800 0 5362900 0 0 0 9959800 9458800 9356300 0 0 0 12326 196 12012 231308;231309;231310;231311;231312;231313;231314;231315;231316;231317;231318 141730;141731;141732 141730 3 LGELLEALK Unmodified 984.58555 0.58554733 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 41.506 39.871 1;2 3.5972E-05 19772 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 152.63 60.724 3611800000 339220000 299310000 297430000 7008300 6074200 6540700 144500000 147740000 147540000 6577300 7195300 6308500 229580000 212820000 182360000 5800600 3681300 4112600 485820000 502110000 496640000 24612000 25902000 22914000 12327 937 12013 231319;231320;231321;231322;231323;231324;231325;231326;231327;231328;231329;231330;231331;231332;231333;231334;231335;231336;231337;231338;231339;231340;231341;231342;231343;231344;231345;231346;231347;231348;231349;231350;231351;231352;231353;231354 141733;141734;141735;141736;141737;141738;141739;141740;141741;141742;141743;141744;141745;141746;141747;141748;141749;141750;141751;141752;141753;141754;141755 141735 21 LGENVPLLIDK Unmodified 1209.6969 0.69688869 1950 Q2M7R5 yibT Uncharacterized protein YibT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.664 38.04 2 9.8911E-05 18526 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.06 100.97 735690000 93808000 0 79040000 4595900 4866800 4521800 92752000 88790000 87498000 6220700 6480000 5691800 45935000 45518000 52731000 3945600 2681700 2027600 34967000 33033000 31792000 3031900 2744700 3021900 12328 1950 12014 231355;231356;231357;231358;231359;231360;231361;231362;231363;231364;231365;231366;231367;231368;231369;231370;231371;231372;231373;231374;231375;231376;231377 141756;141757;141758;141759;141760;141761;141762;141763;141764;141765;141766;141767;141768;141769;141770;141771;141772;141773;141774 141770 17 LGEPVFDVQECQIR Unmodified 1688.8192 0.81920545 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 3 3 2 2 2 4 3 4 2 3 3 3 3 3 39.56 37.972 2;3 1.3972E-26 15033 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 237.93 222.3 37378000000 237340000 222070000 213140000 17600000 18821000 16326000 188880000 169990000 176880000 2298000000 2050700000 2188900000 212550000 197490000 182650000 8174400000 5427000000 5487700000 275320000 252210000 277230000 3046000000 3091200000 2955200000 12329 463 12015 231378;231379;231380;231381;231382;231383;231384;231385;231386;231387;231388;231389;231390;231391;231392;231393;231394;231395;231396;231397;231398;231399;231400;231401;231402;231403;231404;231405;231406;231407;231408;231409;231410;231411;231412;231413;231414;231415;231416;231417;231418;231419;231420;231421;231422;231423;231424;231425;231426;231427;231428;231429;231430;231431;231432;231433;231434;231435;231436;231437;231438 141775;141776;141777;141778;141779;141780;141781;141782;141783;141784;141785;141786;141787;141788;141789;141790;141791;141792;141793;141794;141795;141796;141797;141798;141799;141800;141801;141802;141803;141804;141805;141806;141807;141808;141809;141810;141811;141812;141813;141814;141815;141816;141817;141818;141819;141820;141821;141822;141823;141824;141825;141826;141827;141828;141829;141830;141831;141832;141833;141834;141835;141836;141837;141838;141839;141840;141841;141842;141843;141844;141845;141846;141847 141801 72 LGETGDAIAK Unmodified 973.50803 0.50802529 1689 P64581 yqjD Uncharacterized protein YqjD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 14.346 14.896 2 9.0124E-06 4769 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.49 95.508 14451000000 572000000 551070000 519230000 201790000 210630000 211800000 2938900000 2943400000 2599600000 437270000 434360000 437800000 233120000 260190000 269150000 11990000 9804800 13857000 425780000 384090000 374460000 119960000 150890000 140100000 12330 1689 12016 231439;231440;231441;231442;231443;231444;231445;231446;231447;231448;231449;231450;231451;231452;231453;231454;231455;231456;231457;231458;231459;231460;231461;231462;231463;231464;231465;231466;231467 141848;141849;141850;141851;141852;141853;141854;141855;141856;141857;141858;141859;141860;141861;141862;141863;141864;141865;141866;141867;141868;141869 141861 22 LGETGDAIAKQTR Unmodified 1358.7154 0.7153923 1689 P64581 yqjD Uncharacterized protein YqjD yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 15.776 16.604 3 0.16714 5479 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 12.878 5.9963 58652000 4354500 5485800 5485400 0 0 0 6970900 0 6349000 0 0 0 5301500 6242800 5105300 0 0 0 0 7501900 5854600 0 0 0 12331 1689 12017 231468;231469;231470;231471;231472;231473;231474;231475;231476;231477 141870 141870 1 LGEVATDSKPR Unmodified 1171.6197 0.619701 977 P0AG14 sohB Probable protease SohB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.585 12.223 3 0.00088399 2675 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 60.255 51.011 359480000 13442000 9389200 15813000 6548100 7566700 9248300 36282000 32678000 33249000 14101000 13547000 14076000 26711000 23797000 25192000 0 4215400 5068900 0 27567000 29185000 5036000 6769400 0 12332 977 12018 231478;231479;231480;231481;231482;231483;231484;231485;231486;231487;231488;231489;231490;231491;231492;231493;231494;231495;231496;231497;231498 141871;141872;141873;141874 141871 4 LGEVSDTDIR Unmodified 1103.5459 0.54586736 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 14.39 15.024 2 9.9184E-09 7462 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 182.98 137.9 3494800000 347300000 311490000 313440000 10381000 4450400 4750400 537980000 458100000 479790000 2068300 2006600 1958900 202850000 184510000 190620000 0 0 0 169580000 155010000 111870000 1649700 2288000 2734800 12333 427 12019 231499;231500;231501;231502;231503;231504;231505;231506;231507;231508;231509;231510;231511;231512;231513;231514;231515;231516;231517;231518;231519;231520;231521;231522;231523;231524;231525;231526;231527;231528;231529;231530;231531;231532 141875;141876;141877;141878;141879;141880;141881;141882;141883;141884;141885;141886;141887;141888;141889;141890;141891;141892;141893;141894;141895;141896;141897;141898;141899 141897 25 LGEVTAVPGRPIPVAQLADADALMVR Unmodified 2658.4527 0.45270602 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 49.963 48.557 3 3.85E-22 23568 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.1 159.1 1686100000 169860000 167200000 148840000 872380 0 0 128590000 137780000 121440000 0 0 0 138260000 118280000 117580000 0 0 0 147280000 147230000 142890000 0 0 0 12334 111 12020 231533;231534;231535;231536;231537;231538;231539;231540;231541;231542;231543;231544;231545 141900;141901;141902;141903;141904;141905;141906;141907;141908;141909;141910;141911 141908 12 LGEYGFQNALIVR Unmodified 1478.7882 0.78816332 10 CON__P02769 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 43.72 41.805 2 1.4563E-07 17110 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 154.56 141.2 31283000 0 0 0 5903300 5983900 5427000 0 0 0 13969000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 12335 10 12021 231546;231547;231548;231549 141912;141913;141914;141915 141912 4 LGEYLKPLAER Unmodified 1287.7187 0.71868677 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 1 2 2 2 1 1 2 2 2 2 2 2 2 1 1 26.248 24.991 2;3 0.0001664 10775 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 136.36 125.84 1841500000 91374000 72156000 70513000 1053000 1192400 1673900 305320000 292250000 299440000 2599700 2475100 4636200 147800000 135730000 136800000 0 0 0 90166000 88046000 96212000 1194400 855330 0 12336 554 12022 231550;231551;231552;231553;231554;231555;231556;231557;231558;231559;231560;231561;231562;231563;231564;231565;231566;231567;231568;231569;231570;231571;231572;231573;231574;231575;231576;231577;231578;231579;231580;231581;231582;231583 141916;141917;141918;141919;141920;141921;141922;141923;141924;141925;141926;141927;141928;141929;141930;141931;141932;141933;141934;141935;141936;141937;141938;141939;141940 141935 25 LGFAIAHALDNSAPAVDGIEPELQSK Unmodified 2662.3602 0.36024543 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 47.833 46.454 2;3 1.562E-31 22709 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 269.49 262.03 1748800000 47280000 40947000 48561000 34911000 38185000 41015000 109050000 116490000 99022000 53306000 47740000 53800000 103710000 98157000 92788000 26106000 18646000 16888000 158110000 187290000 156410000 54876000 55779000 49686000 12337 1427 12023 231584;231585;231586;231587;231588;231589;231590;231591;231592;231593;231594;231595;231596;231597;231598;231599;231600;231601;231602;231603;231604;231605;231606;231607;231608;231609;231610;231611;231612;231613;231614;231615;231616;231617;231618 141941;141942;141943;141944;141945;141946;141947;141948;141949;141950;141951;141952;141953;141954;141955;141956;141957;141958;141959;141960;141961;141962;141963;141964;141965 141954 25 LGFFETVDTDTQR Unmodified 1527.7205 0.72053726 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.333 39.641 2 9.2098E-07 18601 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 136.96 127.27 98757000 5305500 5698600 0 0 0 0 0 0 0 0 0 2720500 11273000 9811800 9782900 0 0 0 11637000 15950000 17650000 5685700 3242100 0 12338 486 12024 231619;231620;231621;231622;231623;231624;231625;231626;231627;231628;231629 141966;141967;141968;141969;141970 141969 5 LGFIDFAR Unmodified 937.50215 0.50215205 268 P0A6P5 der GTPase Der yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 44.359 42.833 2 0.0021654 20844 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.77 81.619 143500000 22651000 22631000 23145000 0 689650 0 7725100 7087000 7598900 0 0 0 5918200 6827800 6082500 0 0 0 10225000 11931000 10985000 0 0 0 12339 268 12025 231630;231631;231632;231633;231634;231635;231636;231637;231638;231639;231640;231641;231642 141971;141972;141973;141974;141975;141976 141972 3 LGFLHHIR Unmodified 991.57157 0.57156902 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS 1 16.132 16.879 2 0.11393 5849 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 50.966 31.044 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12340 114 12026 231643 141977 141977 1 LGFLPGDLSQK Unmodified 1173.6394 0.63937381 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.358 38.747 2 0.00016821 19169 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.57 93.419 828260000 94211000 94142000 83993000 4977900 4063400 4173400 68684000 69260000 66926000 7956300 7642200 8109900 38728000 36043000 33098000 2470700 1640800 1735200 59054000 66720000 58240000 4511500 6488600 5386900 12341 530 12027 231644;231645;231646;231647;231648;231649;231650;231651;231652;231653;231654;231655;231656;231657;231658;231659;231660;231661;231662;231663;231664;231665;231666;231667 141978;141979;141980;141981;141982;141983;141984;141985;141986;141987;141988;141989;141990 141979 13 LGFMSFYVK Unmodified 1090.5521 0.55213871 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.021 45.698 2 0.00089562 18159 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 98.458 82.255 2470300000 184050000 181480000 153460000 11786000 12912000 12132000 103490000 89404000 101230000 9446900 12688000 10431000 190610000 166780000 159510000 7412400 6777500 6322100 295940000 320680000 318670000 41457000 37593000 36074000 12342 938 12028 231668;231669;231670;231671;231672;231673;231674;231675;231676;231677;231678;231679;231680;231681;231682;231683;231684;231685;231686;231687;231688;231689;231690;231691 141991;141992;141993;141994;141995;141996;141997;141998;141999;142000;142001;142002;142003;142004;142005;142006;142007;142008;142009;142010;142011;142012 141998 22 LGFNAVHHPAR Unmodified 1217.6418 0.64177385 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 2 1 1 2 2 1 2 12.272 13.111 2;3 1.6506E-06 3657 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 196.95 166.63 1010000000 66586000 75210000 79883000 0 0 0 85798000 100770000 96471000 0 0 0 70871000 67541000 78977000 0 0 0 120540000 70705000 96670000 0 0 0 12343 111 12029 231692;231693;231694;231695;231696;231697;231698;231699;231700;231701;231702;231703;231704;231705;231706;231707;231708 142013;142014;142015;142016;142017;142018;142019 142016 7 LGFPVVVHGVSEDPTR Unmodified 1707.8944 0.8944193 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 1 2 2 2 1 2 2 2 35.253 33.766 2;3 9.745E-14 15577 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 172.17 162.49 1426500000 214140000 186860000 144760000 1918000 1718300 2136100 148460000 142620000 129220000 0 1835900 0 76358000 76552000 72913000 0 913330 0 71555000 80490000 74021000 0 0 0 12344 1341 12030 231709;231710;231711;231712;231713;231714;231715;231716;231717;231718;231719;231720;231721;231722;231723;231724;231725;231726;231727;231728;231729;231730;231731;231732;231733;231734;231735;231736 142020;142021;142022;142023;142024;142025;142026;142027;142028;142029;142030;142031;142032;142033;142034;142035;142036;142037;142038 142033 19 LGFQPDR Unmodified 831.4239 0.42390173 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By MS/MS 1 20.129 20.332 2 0.060126 8049 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 57.453 24.942 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12345 1326 12031 231737 142039 142039 1 LGFVNQGEITTPTTTPIR Unmodified 1944.0316 0.031641064 799 P0ADQ2 yiiD Uncharacterized protein YiiD yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.146 38.47 2 1.9659E-29 18601 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 282.92 272.31 281820000 45137000 38085000 34300000 541630 671120 590830 22568000 18366000 21293000 0 0 0 14322000 15650000 13172000 0 0 0 19305000 18603000 19211000 0 0 0 12346 799 12032 231738;231739;231740;231741;231742;231743;231744;231745;231746;231747;231748;231749;231750;231751;231752 142040;142041;142042;142043;142044;142045 142043 6 LGGAEIAR Unmodified 785.43955 0.43955179 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 13.676 14.323 1;2 1.7682E-06 3638 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 190.49 57.553 5437900000 690400000 676140000 646210000 5071900 0 3974400 24922000 280330000 287170000 61636000 46307000 50290000 341160000 336210000 275870000 24105000 19278000 19557000 555180000 545530000 548600000 0 0 0 12347 374 12033 231753;231754;231755;231756;231757;231758;231759;231760;231761;231762;231763;231764;231765;231766;231767;231768;231769;231770;231771;231772;231773;231774;231775;231776;231777;231778;231779;231780;231781;231782;231783;231784;231785;231786;231787;231788 142046;142047;142048;142049;142050;142051;142052;142053;142054;142055;142056;142057;142058;142059;142060;142061;142062;142063 142048 13 LGGAQQHDSVR Unmodified 1166.5792 0.57923317 482 P0A915 ompW Outer membrane protein W yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 10.588 10.944 2 7.0369E-06 2082 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 150.35 132.97 23688000 0 0 0 0 0 0 4357600 0 0 0 9425100 9905500 0 0 0 0 0 0 0 0 0 0 0 0 12348 482 12034 231789;231790;231791 142064;142065 142065 2 LGGDDGKTEVVDIDGK Unmodified 1616.7893 0.78934511 96 P04949 fliC Flagellin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 21.354 21.746 2;3 1.6034E-88 8657 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 346.46 312.37 710530000 236510000 222120000 218820000 11511000 10778000 10795000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12349 96 12035 231792;231793;231794;231795;231796;231797;231798;231799;231800;231801;231802;231803 142066;142067;142068;142069;142070;142071;142072;142073;142074 142071 9 LGGEVADAAFIINLFDLGGEQR Unmodified 2304.175 0.17501084 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 55.849 54.267 3 0.0034376 26868 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 52.451 48.647 33786000 0 0 0 0 0 0 5158900 3152400 5089800 0 0 0 0 0 0 0 0 0 8995600 11390000 0 0 0 0 12350 1736 12036 231804;231805;231806;231807;231808 142075 142075 1 LGGGDPDANPR Unmodified 1067.4996 0.49958587 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.627 12.511 2 6.7604E-08 3378 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 175.51 170.03 5636000000 353650000 304800000 303220000 1501300 1686700 1548700 610450000 546020000 574010000 0 0 0 445220000 447080000 396420000 0 0 0 558860000 565210000 526340000 0 0 0 12351 412 12037 231809;231810;231811;231812;231813;231814;231815;231816;231817;231818;231819;231820;231821;231822;231823 142076;142077;142078;142079;142080;142081;142082;142083;142084;142085;142086 142080 11 LGGGLSAEALTEK Unmodified 1244.6612 0.66123147 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 2 27.701 26.588 2 5.4039E-09 12338 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 169.65 146.23 4957400000 339080000 290080000 281530000 3857500 3592800 2304800 532000000 480480000 453670000 0 3096500 6793300 455190000 459800000 438430000 2187800 1251700 0 412120000 400270000 391620000 0 0 0 12352 1184 12038 231824;231825;231826;231827;231828;231829;231830;231831;231832;231833;231834;231835;231836;231837;231838;231839;231840;231841;231842;231843;231844;231845;231846 142087;142088;142089;142090;142091;142092;142093;142094;142095;142096;142097;142098 142089 12 LGGGLSAEALTEKDK Unmodified 1487.7831 0.78313752 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.92 21.751 3 0.00014666 9167 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 74.853 69.018 873360000 0 56504000 46643000 2395500 0 0 120220000 113830000 110810000 3909500 4581100 4335700 78676000 68711000 66106000 992880 1362700 1156200 50480000 57088000 82154000 1773300 1635400 0 12353 1184 12039 231847;231848;231849;231850;231851;231852;231853;231854;231855;231856;231857;231858;231859;231860;231861;231862;231863;231864;231865;231866 142099;142100;142101;142102;142103 142102 5 LGGGLSAEALTEKDKADIK Unmodified 1915.0262 0.026221336 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 23.424 22.509 4 0.0028868 7080 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 55.688 46.03 59091000 0 0 0 8745200 8338800 5114400 0 0 0 6280000 5480400 4548800 0 0 0 0 0 0 0 0 0 7280200 9491200 3812000 12354 1184 12040 231867;231868;231869;231870;231871;231872;231873;231874;231875 142104;142105;142106 142105 3 LGGGTVLQQK Unmodified 999.57129 0.57129425 1568 P45464 lpoA Penicillin-binding protein activator LpoA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.632 16.18 2 0.0029948 5213 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 98.933 64.977 108630000 6587800 10410000 6030800 1840800 1491100 1360600 5869000 7187600 6442100 5566800 3992800 4480500 3991500 3956600 3930800 1620200 981550 1030000 8069300 8473500 9000700 1905600 2190000 2221000 12355 1568 12041 231876;231877;231878;231879;231880;231881;231882;231883;231884;231885;231886;231887;231888;231889;231890;231891;231892;231893;231894;231895;231896;231897;231898;231899 142107;142108;142109;142110;142111;142112;142113 142111 1 LGGGVYR Unmodified 720.39187 0.39187332 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 1 1 1 12.811 13.622 2 0.0013909 3840 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 130.84 107.04 880530000 48972000 47087000 43046000 0 0 0 75404000 68895000 64696000 368340 0 0 78361000 82885000 76787000 0 0 0 102920000 100230000 90878000 0 0 0 12356 311 12042 231900;231901;231902;231903;231904;231905;231906;231907;231908;231909;231910;231911;231912;231913;231914 142114;142115;142116;142117;142118;142119;142120;142121 142119 8 LGGLHSAQVLLHSVDFHEIEECQR Unmodified 2773.3606 0.36059655 81 P03813 ygeA Uncharacterized protein YgeA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 38.723 37.05 4 0.031064 18051 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 39.645 32.692 180990000 18652000 18087000 23447000 0 0 0 15274000 20216000 19535000 0 0 0 14839000 12312000 15030000 0 0 0 0 0 23603000 0 0 0 12357 81 12043 231915;231916;231917;231918;231919;231920;231921;231922;231923;231924 142122 142122 1 LGGMVWR Unmodified 817.42688 0.42687862 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.082 26.8 2 0.00084899 8873 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 143.22 143.22 576040000 0 0 0 20532000 19994000 22083000 0 0 0 77814000 71241000 81123000 0 0 0 34784000 24408000 25108000 0 0 0 64291000 68495000 66172000 12358 480 12044 231925;231926;231927;231928;231929;231930;231931;231932;231933;231934;231935;231936;231937;231938;231939 142123;142124;142125;142126;142127;142128;142129;142130;142131;142132;142133;142134;142135;142136;142137 142123 15 LGGMVWR Oxidation (M) 833.42179 0.42179324 480 P0A910 ompA Outer membrane protein A yes yes 0 1 0 By matching By MS/MS 1 1 21.959 21.687 2 0.1435 7122 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 43 39.388 2200700 0 0 0 501670 0 0 0 0 0 0 1699000 0 0 0 0 0 0 0 0 0 0 0 0 0 12359 480 12044 231940;231941 142138 142138 0 LGGNSLLDLVVFGR Unmodified 1458.8195 0.81946344 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 2 3 3 2 2 1 2 2 2 1 1 1 3 2 3 2 1 1 55.403 54.044 2;3 5.2539E-20 21619 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 257.72 239.85 2721500000 148620000 133640000 148720000 87160000 84916000 92766000 90874000 78159000 66127000 46305000 48813000 55145000 180710000 168460000 160340000 11962000 12968000 12916000 255730000 322370000 297630000 79134000 79881000 58174000 12360 698 12045 231942;231943;231944;231945;231946;231947;231948;231949;231950;231951;231952;231953;231954;231955;231956;231957;231958;231959;231960;231961;231962;231963;231964;231965;231966;231967;231968;231969;231970;231971;231972;231973;231974;231975;231976;231977;231978;231979;231980;231981;231982;231983;231984;231985;231986;231987;231988 142139;142140;142141;142142;142143;142144;142145;142146;142147;142148;142149;142150;142151;142152;142153;142154;142155;142156;142157;142158;142159;142160;142161;142162;142163;142164;142165;142166;142167 142150 29 LGGPNFHEIPINRPTCPYHNFQR Unmodified 2763.3452 0.34522126 1174 P21179 katE Catalase HPII yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 3 3 3 1 2 1 1 1 1 2 27.75 26.485 3;4;5 1.0215E-21 12379 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 157.97 154.41 1238200000 175640000 157760000 122380000 1172900 1402400 1625000 208310000 198690000 172600000 0 0 1760100 27930000 9623900 12820000 0 0 0 38102000 39231000 69136000 0 0 0 12361 1174 12046 231989;231990;231991;231992;231993;231994;231995;231996;231997;231998;231999;232000;232001;232002;232003;232004;232005;232006;232007;232008;232009;232010;232011;232012;232013;232014;232015 142168;142169;142170;142171;142172;142173;142174 142169 7 LGGRPEYR Unmodified 946.49846 0.49846366 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.048 11.864 2 0.0030443 3022 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.14 55.509 2205000000 181120000 182230000 183180000 0 0 0 206680000 160600000 196680000 0 0 0 188300000 180610000 165780000 0 0 0 183730000 183330000 192750000 0 0 0 12362 382 12047 232016;232017;232018;232019;232020;232021;232022;232023;232024;232025;232026;232027 142175;142176;142177;142178;142179;142180;142181;142182;142183 142178 9 LGHGVWDLMFER Unmodified 1458.7078 0.70780451 434 P0A8I5 trmB tRNA (guanine-N(7)-)-methyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 48.347 46.572 3 5.1741E-05 18592 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 90.653 82.929 24136000 0 0 0 0 0 0 0 0 0 3635200 4025300 4164700 0 0 0 0 0 0 0 0 0 2948700 5664300 3697700 12363 434 12048 232028;232029;232030;232031;232032;232033 142184;142185;142186 142185 3 LGHNVTVISESGINTYAQVR Unmodified 2157.1178 0.11783031 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 31.129 29.956 3 3.1844E-23 14093 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 180.88 169.45 90711000 27424000 28332000 23847000 0 0 0 0 0 0 0 0 0 2829500 0 2649400 0 0 0 0 3716700 1912900 0 0 0 12364 49 12049 232034;232035;232036;232037;232038;232039;232040 142187;142188;142189 142187 3 LGHTDTLVVCDAGLPIPK Unmodified 1905.003 0.002983473 99 P04982 rbsD D-ribose pyranase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.761 37.088 2 2.5344E-30 18356 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 225.13 216.72 95298000 8224100 5070600 4258100 0 0 0 8688200 9601300 7988500 0 0 0 8911300 7789400 6786600 0 0 0 9855500 9473000 8651200 0 0 0 12365 99 12050 232041;232042;232043;232044;232045;232046;232047;232048;232049;232050;232051;232052 142190;142191;142192;142193 142191 2 LGIAQGDTVK Unmodified 1000.5553 0.55530983 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.629 18.133 2 0.0022125 5297 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 80.219 46.668 135920000 7252700 5311600 6952000 6274400 6113400 5725700 10589000 9530300 9529100 4250400 3851200 4477000 4970500 7026300 6114900 0 0 0 8215100 9599500 10040000 3497200 3369400 3227500 12366 1393 12051 232053;232054;232055;232056;232057;232058;232059;232060;232061;232062;232063;232064;232065;232066;232067;232068;232069;232070;232071;232072;232073 142194;142195 142195 2 LGIDFLK Unmodified 804.47454 0.47454032 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 41.51 39.717 1;2 0.0051746 19839 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.74 57.676 2709400000 135290000 117440000 119830000 555500 0 0 241260000 206900000 218220000 1354300 1731400 984230 209170000 180530000 182160000 0 0 0 341880000 388640000 358870000 1585600 1661500 1301300 12367 1491 12052 232074;232075;232076;232077;232078;232079;232080;232081;232082;232083;232084;232085;232086;232087;232088;232089;232090;232091;232092;232093;232094;232095;232096;232097;232098;232099;232100;232101;232102;232103;232104 142196;142197;142198;142199;142200;142201;142202;142203;142204;142205;142206;142207;142208 142196 12 LGIEINR Unmodified 813.47085 0.47085192 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.804 22.946 2 0.0023929 10134 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.08 50.368 306210000 39309000 42017000 37001000 367390 370180 419490 24480000 26253000 26131000 0 0 0 18670000 14279000 14004000 0 0 0 19487000 21665000 21763000 0 0 0 12368 530 12053 232105;232106;232107;232108;232109;232110;232111;232112;232113;232114;232115;232116;232117;232118;232119 142209;142210;142211;142212;142213;142214;142215;142216;142217 142209 1 LGIELTNCYEHSGLPDIK Unmodified 2058.0092 0.0091910629 131 P06846 ebgR HTH-type transcriptional regulator EbgR yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 40.061 38.534 3 0.015983 18778 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 42.226 41.909 91499000 0 22449000 0 0 0 0 0 0 0 0 0 0 0 13453000 10419000 0 0 0 15783000 17328000 12067000 0 0 0 12369 131 12054 232120;232121;232122;232123;232124;232125 142218 142218 1 LGIFTPK Unmodified 774.46398 0.46397563 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.54 27.242 2 0.0043665 12889 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 104.11 48.085 1364700000 111940000 95818000 104990000 5636700 6631500 5613600 60330000 59553000 70818000 15025000 13727000 13512000 61146000 52375000 55695000 80156000 53526000 58666000 92530000 89178000 79437000 60236000 58553000 59579000 12370 1633 12055 232126;232127;232128;232129;232130;232131;232132;232133;232134;232135;232136;232137;232138;232139;232140;232141;232142;232143;232144;232145;232146;232147;232148;232149 142219;142220;142221;142222;142223;142224;142225;142226;142227;142228;142229;142230;142231;142232;142233;142234;142235;142236;142237;142238;142239;142240;142241;142242 142226 24 LGIGQLKWELEDYCFR Unmodified 2025.9982 0.99823245 980 P0AG20 relA GTP pyrophosphokinase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.512 47.166 3 0.16566 23080 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 7.217 2.4125 975670000 98966000 108030000 98601000 1478000 1557400 1885300 153930000 151570000 130850000 0 0 0 18573000 16661000 0 0 0 0 63585000 67442000 62543000 0 0 0 12371 980 12056 232150;232151;232152;232153;232154;232155;232156;232157;232158;232159;232160;232161;232162;232163 142243;142244;142245 142244 3 LGIKPDQVEQYYIDK Unmodified 1807.9356 0.93561541 116 P05707 srlD Sorbitol-6-phosphate 2-dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 34.4 32.954 2;3 2.9015E-08 15580 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.54 130.32 616940000 53932000 57462000 55220000 0 0 0 80274000 88300000 81763000 0 0 0 47348000 48796000 41335000 0 0 0 7297700 7833400 47379000 0 0 0 12372 116 12057 232164;232165;232166;232167;232168;232169;232170;232171;232172;232173;232174;232175;232176;232177;232178;232179;232180;232181;232182;232183;232184;232185 142246;142247;142248;142249;142250;142251;142252;142253;142254;142255;142256;142257;142258;142259;142260;142261;142262 142256 16 LGILDASECPPTYGVK Unmodified 1718.8549 0.85492225 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.413 38.748 2 6.8241E-10 18195 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 136.96 132.26 71023000 7799800 4829400 6365200 0 0 0 6413100 5769300 7747500 0 0 0 4889700 6113600 4490200 0 0 0 4960400 5544700 6099700 0 0 0 12373 1867 12058 232186;232187;232188;232189;232190;232191;232192;232193;232194;232195;232196;232197 142263;142264;142265 142265 3 LGILDDSQLER Unmodified 1257.6565 0.65648044 675 P0ABS5 dnaG DNA primase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 37.164 35.186 2 9.0155E-05 17023 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.73 93.334 71553000 0 0 11146000 556640 0 0 9265400 8693600 8128900 727070 676750 0 0 0 0 0 0 0 10259000 11450000 10649000 0 0 0 12374 675 12059 232198;232199;232200;232201;232202;232203;232204;232205;232206;232207;232208 142266;142267;142268;142269 142268 4 LGIMPGFGGSVR Unmodified 1189.6278 0.62776327 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 39.503 37.908 2 3.0224E-06 18222 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.08 129.22 328470000 99863000 91584000 96676000 0 1529900 1921000 0 0 6517100 0 0 0 2515000 3251200 2834500 0 0 0 5834600 6139000 9804500 0 0 0 12375 1173 12060 232209;232210;232211;232212;232213;232214;232215;232216;232217;232218;232219;232220;232221 142270;142271;142272;142273;142274 142274 3 LGINPDFYEK Unmodified 1194.5921 0.59208927 536 P0A9M0 lon Lon protease yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.817 33.322 2 0.00035583 16202 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 108.43 77.746 1184800000 108080000 106240000 0 1711500 0 0 124580000 124150000 126230000 13897000 12223000 8841900 86457000 90213000 77003000 38209000 21643000 21643000 0 103210000 100980000 7222000 6853900 5439000 12376 536 12061 232222;232223;232224;232225;232226;232227;232228;232229;232230;232231;232232;232233;232234;232235;232236;232237;232238;232239;232240;232241 142275;142276;142277;142278;142279;142280;142281;142282;142283;142284;142285;142286;142287 142278 11 LGINPDFYEKR Unmodified 1350.6932 0.6932003 536 P0A9M0 lon Lon protease yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 2 2 2 1 1 1 28.093 27.01 2;3 1.2481E-05 8954 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 147.2 142.59 236500000 0 0 0 0 0 837300 0 0 0 23114000 5641400 4040200 0 0 0 71063000 56586000 66742000 0 0 0 3211000 2577500 2691800 12377 536 12062 232242;232243;232244;232245;232246;232247;232248;232249;232250;232251;232252;232253;232254;232255 142288;142289;142290;142291;142292;142293;142294;142295;142296;142297 142288 10 LGIPYVFK Unmodified 935.54804 0.54803961 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 42.623 40.92 2 0.010348 20310 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.847 61.407 4428100 0 0 0 2025700 0 2402300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12378 299 12063 232256;232257;232258;232259;232260;232261;232262;232263;232264;232265;232266 142298;142299;142300;142301;142302;142303;142304;142305;142306;142307 142300 10 LGIQAFEPVLIEGK Unmodified 1512.8552 0.85518025 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 3 4 3 2 2 2 3 3 3 50.91 49.827 2;3 3.2699E-06 19898 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 145.91 135.39 78439000000 661360000 692570000 585250000 44822000 46701000 45204000 430260000 411350000 371300000 5691600000 5527300000 5345800000 503460000 492990000 421700000 12706000000 10365000000 12107000000 665110000 652570000 628820000 6746500000 6600200000 6694700000 12379 458 12064 232267;232268;232269;232270;232271;232272;232273;232274;232275;232276;232277;232278;232279;232280;232281;232282;232283;232284;232285;232286;232287;232288;232289;232290;232291;232292;232293;232294;232295;232296;232297;232298;232299;232300;232301;232302;232303;232304;232305;232306;232307;232308;232309;232310;232311;232312;232313;232314;232315;232316;232317;232318;232319;232320;232321;232322 142308;142309;142310;142311;142312;142313;142314;142315;142316;142317;142318;142319;142320;142321;142322;142323;142324;142325;142326;142327;142328;142329;142330;142331;142332;142333;142334;142335;142336;142337;142338;142339;142340;142341;142342;142343;142344;142345;142346;142347;142348;142349;142350;142351;142352;142353;142354;142355;142356;142357;142358;142359;142360;142361;142362;142363;142364;142365;142366 142327 59 LGISDEQVK Unmodified 987.52368 0.52367535 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 1 2 2 3 3 2 1 1 1 1 1 1 2 1 1 2 1 1 1 18.238 18.687 2 0.00019484 7200 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.02 88.888 1036900000 25392000 22491000 16951000 11802000 9065800 11631000 173810000 207570000 180060000 25050000 19051000 0 48744000 41614000 36925000 4079100 0 5368000 66385000 56347000 59426000 15144000 0 0 12380 819 12065 232323;232324;232325;232326;232327;232328;232329;232330;232331;232332;232333;232334;232335;232336;232337;232338;232339;232340;232341;232342;232343;232344;232345;232346;232347;232348;232349;232350;232351;232352;232353;232354;232355;232356;232357 142367;142368;142369;142370;142371;142372;142373;142374;142375;142376;142377;142378;142379;142380;142381;142382;142383;142384;142385;142386;142387;142388;142389;142390 142379 24 LGIVKPWNSTWFANTK Unmodified 1860.9887 0.98865404 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 42.27 40.476 2;3 1.0519E-30 19535 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 240.65 238.21 3538100000 446530000 394240000 388380000 32004000 31650000 28529000 100790000 103300000 93526000 101000000 80651000 80346000 166830000 155010000 173090000 5353300 1289600 0 305450000 310970000 315620000 80060000 73140000 70364000 12381 374 12066 232358;232359;232360;232361;232362;232363;232364;232365;232366;232367;232368;232369;232370;232371;232372;232373;232374;232375;232376;232377;232378;232379;232380;232381;232382;232383;232384;232385;232386;232387;232388;232389;232390;232391;232392;232393;232394;232395;232396;232397;232398;232399;232400;232401 142391;142392;142393;142394;142395;142396;142397;142398;142399;142400;142401;142402;142403;142404;142405;142406;142407;142408;142409;142410;142411;142412;142413;142414;142415;142416;142417;142418;142419;142420;142421;142422;142423;142424;142425;142426;142427;142428;142429;142430 142424 40 LGIVMDPIANINIK Unmodified 1509.8589 0.85888542 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.284 50.029 2 4.3687E-08 24167 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.9 135.9 1822700000 201950000 173220000 165510000 0 0 0 140520000 136300000 123510000 0 0 0 135120000 144300000 127230000 0 0 0 157640000 156690000 160660000 0 0 0 12382 90 12067 232402;232403;232404;232405;232406;232407;232408;232409;232410;232411;232412;232413 142431;142432;142433;142434;142435;142436;142437;142438;142439;142440;142441;142442 142436 12 LGLALAEDEIDYLQDAFTK Unmodified 2124.0627 0.062666421 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 1 55.444 53.989 2;3 5.1414E-30 26932 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 282.62 279.85 489480000 133380000 101570000 128070000 0 1316400 0 6391700 2574000 9795400 0 0 0 16454000 16554000 16552000 0 0 0 23884000 19656000 13277000 0 0 0 12383 1107 12068 232414;232415;232416;232417;232418;232419;232420;232421;232422;232423;232424;232425;232426;232427;232428;232429;232430;232431;232432;232433;232434;232435 142443;142444;142445;142446 142443 4 LGLAYGGDGYDK Unmodified 1227.5772 0.57716749 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.315 25.979 2 0.00023477 11846 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.789 72.851 194600000 20492000 19268000 17946000 2819100 3087300 2885900 14783000 9810600 10514000 2847300 3125300 2574300 9363100 10639000 8255300 0 0 0 16911000 18059000 18182000 1550000 0 1484500 12384 438 12069 232436;232437;232438;232439;232440;232441;232442;232443;232444;232445;232446;232447;232448;232449;232450;232451;232452;232453;232454;232455 142447;142448;142449;142450;142451;142452;142453;142454;142455;142456;142457;142458 142449 7 LGLDEGKEVLILLK Unmodified 1538.9283 0.92834519 518 P0A9G8 modE Transcriptional regulator ModE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 47.827 46.487 3 1.1937E-05 22642 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 92.65 83.76 27122000 6625300 8944100 11552000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12385 518 12070 232456;232457;232458 142459;142460;142461 142461 3 LGLDTLGIETVER Unmodified 1414.7668 0.76675917 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.31 44.804 2 1.1451E-23 22115 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 226.29 162.25 1877300000 0 141600000 132060000 920150 791530 712630 176200000 170210000 189080000 0 0 0 137900000 134400000 148640000 0 0 0 220360000 222850000 201530000 0 0 0 12386 1073 12071 232459;232460;232461;232462;232463;232464;232465;232466;232467;232468;232469;232470;232471;232472 142462;142463;142464;142465;142466;142467;142468;142469;142470;142471;142472 142464 11 LGLDVLVHGEAER Unmodified 1406.7518 0.75177781 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 2 1 1 1 1 1 1 34.211 32.758 3 2.3355E-05 15463 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.766 90.647 700810000 28542000 29539000 26226000 0 0 0 211180000 180060000 154870000 0 0 0 12051000 8919500 10932000 0 0 0 20878000 0 17616000 0 0 0 12387 1265 12072 232473;232474;232475;232476;232477;232478;232479;232480;232481;232482;232483;232484 142473;142474;142475;142476;142477;142478;142479;142480;142481;142482;142483;142484 142484 12 LGLGAQFGGK Unmodified 946.52362 0.52361577 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 26.176 25.346 2 0.010993 10906 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 64.265 26.131 173850000 0 0 0 0 0 0 0 0 0 0 0 0 63942000 55865000 54046000 0 0 0 0 0 0 0 0 0 12388 1097 12073 232485;232486;232487 142485;142486 142486 1 LGLGGPIGSGR Unmodified 982.55598 0.55597854 1941 P77775 yfcH Epimerase family protein YfcH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 26.314 24.872 2 0.0013977 11462 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 79.974 71.152 126660000 0 0 0 5781300 5348000 6954200 24880000 14968000 24573000 8562900 9331800 9784300 0 0 0 0 0 0 10148000 0 0 1877100 2429300 2021300 12389 1941 12074 232488;232489;232490;232491;232492;232493;232494;232495;232496;232497;232498;232499;232500 142487;142488 142488 2 LGLGVGVIASMAVDPVADPDLVR Unmodified 2263.2246 0.22460357 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By MS/MS 1 55.049 55.161 3 5.9446E-10 20833 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 114.88 112 21931000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21931000 0 0 0 0 0 0 12390 515 12075 232501 142489 142489 1 LGLHCVALLENPIGTTAENYLTNGNR Unmodified 2839.4287 0.42867612 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 50.771 49.417 3 1.2257E-30 24314 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.86 177.3 120820000 18261000 19598000 19189000 0 483300 0 7139100 9401300 8631500 0 3570500 0 0 6936000 4073200 0 0 0 8134000 8552300 6847300 0 0 0 12391 1850 12076 232502;232503;232504;232505;232506;232507;232508;232509;232510;232511;232512;232513;232514 142490;142491;142492;142493 142491 4 LGLIEVQAPILSR Unmodified 1407.8449 0.84494991 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.079 47.686 2 2.6265E-09 23524 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 175.15 168.84 3232200000 310080000 308210000 280200000 7458500 7612300 8832300 592920000 561700000 564430000 17606000 12353000 15483000 84418000 83041000 82113000 0 0 0 94516000 104890000 89095000 2438900 3060000 1723300 12392 64 12077 232515;232516;232517;232518;232519;232520;232521;232522;232523;232524;232525;232526;232527;232528;232529;232530;232531;232532;232533;232534;232535 142494;142495;142496;142497;142498;142499;142500;142501;142502;142503;142504;142505;142506;142507;142508;142509;142510;142511 142498 18 LGLLEQR Unmodified 827.4865 0.48650199 1454 P37005 lasT Uncharacterized tRNA/rRNA methyltransferase LasT yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 23.915 23.044 2 0.025243 10643 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 71.852 32.189 243010000 13169000 17877000 15512000 0 423830 0 29401000 29012000 21650000 3061100 3197800 3666300 12122000 10515000 12088000 0 996390 471410 32934000 19996000 15276000 677320 965460 0 12393 1454 12078 232536;232537;232538;232539;232540;232541;232542;232543;232544;232545;232546;232547;232548;232549;232550;232551;232552;232553;232554;232555;232556;232557;232558;232559;232560;232561;232562;232563;232564;232565;232566;232567 142512;142513;142514 142512 1 LGLMAGYQESR Unmodified 1223.5969 0.59685707 209 P09169 ompT Protease 7 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.224 26.935 2 0.16922 12240 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 45.158 26.378 59070000 9938700 7392400 0 2958100 2459200 2946800 0 0 0 1948300 1741500 1992300 4893700 0 0 2077200 0 1497600 6875500 0 6916500 2450600 2981900 0 12394 209 12079 232568;232569;232570;232571;232572;232573;232574;232575;232576;232577;232578;232579;232580;232581;232582 142515 142515 1 LGLMVHVTAHR Unmodified 1232.6812 0.68119582 1315 P28248 dcd Deoxycytidine triphosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 18.451 19.022 3 0.00049645 7142 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.08 58.775 84243000 14593000 15884000 11413000 0 0 0 8000300 9833900 6056700 0 0 0 2787000 3179200 0 0 0 0 5600000 6895100 0 0 0 0 12395 1315 12080 232583;232584;232585;232586;232587;232588;232589;232590;232591;232592 142516;142517;142518;142519 142517 4 LGLNAHLEEEMAR Unmodified 1481.7297 0.72966216 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.585 26.438 3 0.025221 12113 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 44.989 37.264 192640000 10892000 8155500 8349200 0 0 0 16514000 14622000 16335000 0 0 0 17169000 22112000 16980000 0 0 0 21380000 20579000 19555000 0 0 0 12396 180 12081 232593;232594;232595;232596;232597;232598;232599;232600;232601;232602;232603;232604 142520;142521;142522 142520 0 LGLNITPLTADHISLR Unmodified 1732.9836 0.98356866 1598 P52007 yecM Protein YecM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 44.088 42.635 2;3 0.00013545 21323 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 70.197 67.835 383700000 42200000 44569000 39088000 0 0 0 27808000 29654000 26761000 0 0 0 25766000 26101000 30282000 0 0 0 31540000 29120000 30806000 0 0 0 12397 1598 12082 232605;232606;232607;232608;232609;232610;232611;232612;232613;232614;232615;232616;232617;232618;232619;232620;232621;232622;232623;232624;232625 142523;142524;142525;142526;142527;142528;142529;142530;142531;142532;142533;142534;142535 142523 13 LGLNPDQVYK Unmodified 1145.6081 0.60807369 608 P0AAR3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 28.358 27.216 2 0.00040642 12383 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.14 83.608 288910000 49582000 47756000 38633000 0 0 0 0 0 11782000 0 0 0 18233000 20982000 17324000 0 0 0 31214000 23245000 30155000 0 0 0 12398 608 12083 232626;232627;232628;232629;232630;232631;232632;232633;232634;232635 142536;142537;142538;142539;142540;142541 142539 3 LGLNSEEQKEDTNYLDGIQGLLK Unmodified 2576.297 0.29697647 1151 P18390 yjjA Uncharacterized protein YjjA yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.655 47.498 3 2.0154E-06 22196 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 92.01 90.571 287070000 16862000 35572000 27903000 3372700 4497900 4967300 0 0 51725000 8017200 5053200 5984000 33369000 27672000 27833000 6135000 9400300 9321500 0 0 0 4652400 0 4731300 12399 1151 12084 232636;232637;232638;232639;232640;232641;232642;232643;232644;232645;232646;232647;232648;232649;232650;232651;232652;232653 142542;142543;142544;142545;142546;142547;142548;142549 142548 8 LGLPGSR Unmodified 698.40752 0.40752338 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.553 18.957 2 0.0059588 6972 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 97.473 62.768 133350000 18024000 16988000 19938000 2027800 0 2226400 9048000 0 6939100 1089600 873910 799070 5181000 0 0 0 0 0 19235000 16087000 14897000 0 0 0 12400 198 12085 232654;232655;232656;232657;232658;232659;232660;232661;232662;232663;232664;232665;232666;232667 142550;142551;142552 142551 3 LGLPLFVK Unmodified 885.56878 0.56877505 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.834 44.37 2 0.0057635 21707 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.086 75.949 266700000 20702000 20112000 17839000 0 0 0 20903000 20725000 21827000 0 0 0 27500000 25795000 26077000 0 0 0 21259000 22379000 21580000 0 0 0 12401 253 12086 232668;232669;232670;232671;232672;232673;232674;232675;232676;232677;232678;232679 142553;142554;142555;142556;142557;142558;142559;142560;142561;142562;142563;142564 142559 12 LGLPLFVKPANQGSSVGVSK Unmodified 1997.131 0.13096118 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 38.456 36.745 2;3 1.587E-10 17817 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 163.62 158.82 1798400000 127460000 127430000 139700000 1030600 959130 1143800 167390000 165610000 163770000 0 0 1130600 125570000 139350000 120980000 0 0 0 194820000 165560000 155800000 0 708100 0 12402 253 12087 232680;232681;232682;232683;232684;232685;232686;232687;232688;232689;232690;232691;232692;232693;232694;232695;232696;232697;232698;232699;232700;232701;232702;232703;232704;232705;232706;232707;232708 142565;142566;142567;142568;142569;142570;142571;142572;142573;142574;142575;142576;142577;142578;142579;142580;142581 142571 17 LGLSDAFLIK Unmodified 1075.6277 0.6277465 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.241 46.808 2 4.002E-05 22749 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.5 126.34 305300000 29686000 35078000 34595000 1204800 868770 1055000 35093000 33730000 30751000 0 1650100 2074100 12946000 12800000 15395000 0 0 0 22850000 17045000 17441000 1034400 0 0 12403 1334 12088 232709;232710;232711;232712;232713;232714;232715;232716;232717;232718;232719;232720;232721;232722;232723;232724;232725;232726 142582;142583;142584;142585;142586;142587;142588;142589;142590;142591;142592;142593;142594 142590 12 LGLSYDDDEEEEEDEKQEDMMR Unmodified 2704.064 0.064000922 430 P0A8H6 yihI Der GTPase-activating protein YihI yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.707 30.351 3 7.7399E-54 14342 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 269.16 269.16 409890000 61776000 73802000 64737000 0 0 0 24524000 22146000 21967000 0 0 0 22386000 17752000 21638000 0 0 0 27648000 23994000 27522000 0 0 0 12404 430 12089 232727;232728;232729;232730;232731;232732;232733;232734;232735;232736;232737;232738 142595;142596;142597;142598;142599;142600;142601;142602;142603;142604;142605 142600 11 LGLTNTTFQTVHGLDAPGQFSTAR Unmodified 2531.2769 0.27685015 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 40.692 38.782 3 4.518E-07 15530 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 107.08 103.81 343080000 0 21599000 17981000 4442600 3945600 4410700 52313000 54506000 45461000 8587300 9845100 0 23944000 27003000 24725000 0 0 0 0 0 27687000 6192300 4532800 5903900 12405 189 12090 232739;232740;232741;232742;232743;232744;232745;232746;232747;232748;232749;232750;232751;232752;232753;232754;232755;232756;232757 142606;142607;142608;142609;142610;142611;142612 142607 7 LGMDRDIIVNK Unmodified 1272.686 0.68600643 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 22.636 22.101 2;3 0.00021724 9184 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.88 87.116 4801300000 1381500000 1375100000 1256600000 12440000 15750000 13520000 100750000 109390000 102810000 0 0 0 61558000 61694000 56085000 0 0 0 78763000 92337000 82989000 0 0 0 12406 1217 12091 232758;232759;232760;232761;232762;232763;232764;232765;232766;232767;232768;232769;232770;232771;232772;232773;232774;232775;232776;232777;232778;232779;232780;232781;232782;232783;232784;232785;232786 142613;142614;142615;142616;142617;142618;142619;142620;142621;142622;142623;142624;142625;142626;142627;142628;142629;142630;142631;142632;142633 142632 21 LGMDRDIIVNK Oxidation (M) 1288.6809 0.68092105 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 1 1 By matching By MS/MS By matching 1 1 1 15.838 16.537 2 0.029807 5718 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 55.549 43.022 16895000 5569000 6032500 5293800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12407 1217 12091 232787;232788;232789 142634 142634 508 1 LGMDYVDILQIHR Unmodified 1571.813 0.81299786 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.572 45.114 3 1.7857E-07 21080 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 127.37 113.96 638280000 128680000 115030000 88809000 1964000 1507100 2291500 53933000 48609000 47816000 0 0 0 24301000 23957000 24085000 0 0 0 26312000 26929000 24056000 0 0 0 12408 1934 12092 232790;232791;232792;232793;232794;232795;232796;232797;232798;232799;232800;232801;232802;232803;232804 142635;142636;142637;142638;142639;142640;142641;142642;142643;142644;142645;142646 142645 12 LGMHDASDEALR Unmodified 1313.6034 0.60339901 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 17.08 17.862 2 1.5697E-06 6425 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 106.29 70.846 71622000 16668000 0 16390000 0 0 0 0 0 0 0 0 0 8229000 5023400 6605500 0 0 0 9763000 8943400 0 0 0 0 12409 88 12093 232805;232806;232807;232808;232809;232810;232811;232812;232813;232814 142647;142648;142649;142650;142651;142652;142653;142654 142652 8 LGMKPGEAIEHPWVTK Unmodified 1791.9342 0.93417563 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 1 2 1 25.79 24.711 3;4 7.0643E-07 10935 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105 101.16 2197600000 99012000 97704000 143650000 8100100 6731000 6983700 124660000 124940000 116190000 78233000 73073000 62720000 156850000 132700000 139910000 61395000 44016000 45260000 222150000 176240000 190380000 18586000 47509000 20643000 12410 1057 12094 232815;232816;232817;232818;232819;232820;232821;232822;232823;232824;232825;232826;232827;232828;232829;232830;232831;232832;232833;232834;232835;232836;232837;232838;232839;232840;232841;232842;232843;232844;232845;232846;232847;232848;232849;232850;232851;232852;232853;232854;232855;232856;232857;232858;232859;232860;232861 142655;142656;142657;142658;142659;142660;142661;142662;142663;142664;142665;142666;142667;142668;142669;142670;142671;142672;142673;142674;142675;142676;142677;142678;142679;142680;142681;142682;142683;142684;142685;142686;142687;142688;142689;142690 142682 36 LGMLEMVFAK Unmodified 1137.5926 0.59262332 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.9 49.613 2 0.00045359 24480 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 117.04 100.83 1415000000 208400000 218440000 203330000 765720 775000 777290 107810000 112100000 90298000 0 0 0 66061000 63868000 68621000 0 0 0 85543000 96903000 91288000 0 0 0 12411 43 12095 232862;232863;232864;232865;232866;232867;232868;232869;232870;232871;232872;232873;232874;232875;232876 142691;142692;142693;142694;142695;142696;142697;142698;142699;142700;142701;142702;142703 142693 13 LGMMTTVSGVEMSR Unmodified 1497.699 0.69895566 342 P0A7G2 rbfA Ribosome-binding factor A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.062 34.305 2 1.5781E-05 16767 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.51 119.09 252780000 28449000 31734000 30639000 1321600 0 1078700 20089000 15346000 16769000 8110100 9697600 7505000 11317000 11992000 11301000 0 0 0 16870000 13336000 14652000 0 2568600 0 12412 342 12096 232877;232878;232879;232880;232881;232882;232883;232884;232885;232886;232887;232888;232889;232890;232891;232892;232893;232894 142704;142705;142706;142707;142708 142705 5 LGMVWFMGHDSSK Unmodified 1493.6795 0.67954084 1198 P22524 mukE Chromosome partition protein MukE yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.075 38.328 3 2.5378E-05 18493 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.927 68.848 119110000 10096000 8381100 6891100 623790 866140 994690 7368100 8768700 9486700 0 2102100 0 6786400 7391200 8343000 0 0 0 12075000 12266000 14081000 0 0 2585300 12413 1198 12097 232895;232896;232897;232898;232899;232900;232901;232902;232903;232904;232905;232906;232907;232908;232909;232910;232911 142709;142710;142711;142712;142713;142714;142715;142716;142717;142718 142715 10 LGNECETYAELK Unmodified 1425.6446 0.64459513 77 P02943 lamB Maltoporin yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.337 22.555 2 2.1949E-06 7947 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 143.5 136.9 185450000 0 0 0 955400 1126500 1163700 6390600 0 4655900 10895000 7062200 4710700 10320000 9901400 10271000 5477000 0 3612200 39485000 36890000 0 11062000 10234000 11236000 12414 77 12098 232912;232913;232914;232915;232916;232917;232918;232919;232920;232921;232922;232923;232924;232925;232926;232927;232928;232929 142719;142720;142721;142722;142723;142724;142725;142726;142727 142722 9 LGNFINGELWGR Unmodified 1374.7044 0.70443369 1635 P60955 lgt Prolipoprotein diacylglyceryl transferase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 45.89 44.341 2 5.9739E-05 17523 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 105.2 96.237 37787000 0 0 0 1506600 1496200 0 0 0 0 5306800 5945600 6768300 0 0 0 2561400 1406400 0 0 0 0 3329200 4708000 4758600 12415 1635 12099 232930;232931;232932;232933;232934;232935;232936;232937;232938;232939 142728;142729;142730;142731;142732 142732 5 LGNMPQIR Oxidation (M) 943.49094 0.49093544 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 2 1 2 1 2 1 13.475 14.363 2 0.0035365 4541 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.661 74.507 155130000 0 0 0 0 0 0 7830800 16015000 13660000 0 0 0 11212000 15550000 10807000 0 0 0 29364000 23602000 27085000 0 0 0 12416 993 12100 232940;232941;232942;232943;232944;232945;232946;232947;232948;232949;232950;232951;232952;232953 142733;142734;142735;142736;142737;142738;142739;142740;142741;142742;142743;142744 142733 457 12 LGNMPQIR Unmodified 927.49602 0.49602082 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 22.069 21.993 2 1.3743E-07 9233 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159.19 125.45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12417 993 12100 232954;232955;232956;232957;232958 142745;142746;142747;142748;142749 142747 5 LGNNPNFHR Unmodified 1067.5261 0.52607539 332 P0A7D1 pth Peptidyl-tRNA hydrolase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.627 12.505 3 0.042594 3390 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 43.083 33.869 158910000 20308000 0 16069000 0 297300 470540 16276000 9809600 16119000 0 0 0 16822000 14453000 0 0 0 0 15861000 17465000 14961000 0 0 0 12418 332 12101 232959;232960;232961;232962;232963;232964;232965;232966;232967;232968;232969;232970 142750;142751 142751 2 LGNSVDWER Unmodified 1074.5094 0.50942227 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 2 1 2 3 3 1 1 1 1 2 2 1 1 1 21.788 21.599 2 3.8016E-08 9340 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 214.9 189.16 3962600000 132040000 104700000 106140000 201950000 203550000 196640000 128660000 137730000 131720000 187260000 92561000 172950000 181910000 200170000 166890000 79117000 46193000 50208000 178900000 268470000 250270000 256050000 264230000 224270000 12419 158 12102 232971;232972;232973;232974;232975;232976;232977;232978;232979;232980;232981;232982;232983;232984;232985;232986;232987;232988;232989;232990;232991;232992;232993;232994;232995;232996;232997;232998;232999;233000;233001;233002;233003 142752;142753;142754;142755;142756;142757;142758;142759;142760;142761;142762;142763 142754 12 LGNTLGSDGENLPK Unmodified 1413.71 0.70997257 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 23.598 22.523 2 1.4887E-05 9904 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.87 123.57 92289000 0 0 0 0 0 0 31121000 28997000 30369000 0 0 0 0 0 0 0 0 0 0 0 0 1801200 0 0 12420 194 12103 233004;233005;233006;233007 142764 142764 1 LGNTRPCTTADLALPGSQEPAEVTLR Unmodified 2766.397 0.39704164 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.206 34.511 3 1.9482E-10 16858 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.87 117.14 455100000 0 4088500 0 0 0 0 77447000 63883000 54921000 2428300 2888400 2507900 57346000 57786000 42442000 1917600 0 0 25417000 32502000 29520000 0 0 0 12421 506 12104 233008;233009;233010;233011;233012;233013;233014;233015;233016;233017;233018;233019;233020;233021 142765;142766;142767;142768;142769;142770;142771;142772;142773 142767 9 LGPALAAGNSVILKPSEK Unmodified 1764.0145 0.014534437 1225 P23883 puuC Aldehyde dehydrogenase PuuC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 29.922 28.784 3 7.8305E-08 13335 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.01 108.68 90528000 30501000 35296000 24731000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12422 1225 12105 233022;233023;233024 142774;142775;142776 142775 3 LGPDPDQFGG Unmodified 1001.4454 0.44542503 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.998 33.55 1;2 0.014072 16195 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.838 62.983 375400000 53275000 47969000 48186000 0 0 0 52859000 54743000 51830000 0 0 0 9749800 7683000 8264900 0 0 0 13849000 14338000 12656000 0 0 0 12423 1960 12106 233025;233026;233027;233028;233029;233030;233031;233032;233033;233034;233035;233036;233037;233038;233039;233040;233041;233042;233043;233044;233045;233046;233047;233048 142777;142778;142779;142780 142779 3 LGPEEITADIPNVGEAALSK Unmodified 2023.0474 0.047350708 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 3 3 2 2 2 8 8 5 2 2 2 5 3 2 48.429 47.483 2;3 1.8832E-37 17646 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 293.25 290.6 36020000000 260680000 269840000 249990000 5502700 6728600 9962900 161590000 146630000 144870000 1019700000 1040300000 1361200000 229570000 218490000 225950000 7438000000 6710500000 6729200000 283160000 285850000 270520000 3025400000 2961200000 2965000000 12424 463 12107 233049;233050;233051;233052;233053;233054;233055;233056;233057;233058;233059;233060;233061;233062;233063;233064;233065;233066;233067;233068;233069;233070;233071;233072;233073;233074;233075;233076;233077;233078;233079;233080;233081;233082;233083;233084;233085;233086;233087;233088;233089;233090;233091;233092;233093;233094;233095;233096;233097;233098;233099;233100;233101;233102;233103;233104;233105;233106;233107;233108;233109;233110;233111 142781;142782;142783;142784;142785;142786;142787;142788;142789;142790;142791;142792;142793;142794;142795;142796;142797;142798;142799;142800;142801;142802;142803;142804;142805;142806;142807;142808;142809;142810;142811;142812;142813;142814;142815;142816;142817;142818;142819;142820;142821;142822;142823;142824;142825;142826;142827;142828;142829;142830;142831;142832;142833;142834;142835;142836;142837;142838;142839;142840;142841;142842;142843;142844;142845;142846;142847;142848;142849;142850;142851;142852;142853;142854 142806 72 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK Unmodified 4209.1944 0.19441546 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 55.636 54.682 3;4 2.4854E-43 21136 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 198.06 196.87 2439800000 0 0 0 0 0 0 0 0 0 87488000 75775000 90542000 0 0 0 541480000 527720000 642860000 0 0 0 163970000 168630000 141330000 12425 463 12108 233112;233113;233114;233115;233116;233117;233118;233119;233120;233121;233122;233123;233124;233125;233126;233127;233128;233129 142855;142856;142857;142858;142859;142860;142861;142862;142863;142864;142865;142866;142867;142868;142869;142870 142860 16 LGPFVADIHQWQNLDDYYNQYR Unmodified 2754.2827 0.28266381 1248 P24252 ybgA Uncharacterized protein YbgA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 51.683 50.421 3 0.00012151 24478 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 75.358 71.96 122980000 19503000 19823000 18318000 0 0 0 9834000 11153000 9025000 0 0 0 6101500 7444800 0 0 0 0 9913200 6020900 5846100 0 0 0 12426 1248 12109 233130;233131;233132;233133;233134;233135;233136;233137;233138;233139;233140 142871;142872 142872 2 LGPGVDVNYMLHTQNK Unmodified 1784.888 0.88795372 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 1 1 1 33.393 31.781 2;3 2.9393E-14 14999 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 205.46 196.74 964160000 12175000 109260000 9409400 13835000 13404000 14702000 96006000 108710000 97766000 10746000 8107100 9257400 70023000 67929000 63368000 0 0 0 9928600 119680000 107610000 8122800 7337700 6781900 12427 1146 12110 233141;233142;233143;233144;233145;233146;233147;233148;233149;233150;233151;233152;233153;233154;233155;233156;233157;233158;233159;233160;233161;233162;233163;233164;233165;233166;233167;233168;233169;233170;233171;233172;233173 142873;142874;142875;142876;142877;142878;142879;142880;142881;142882;142883;142884;142885;142886;142887;142888;142889 142878 17 LGPLLYAEEEGEVFLGR Unmodified 1890.9727 0.9727292 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 54.529 53.093 2;3 8.5408E-19 26366 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 224.42 221.65 535030000 16930000 11170000 11010000 13804000 11093000 10495000 43916000 35930000 36262000 32361000 21501000 17584000 35240000 32243000 28550000 0 0 0 48424000 39925000 40815000 20501000 14644000 12636000 12428 595 12111 233174;233175;233176;233177;233178;233179;233180;233181;233182;233183;233184;233185;233186;233187;233188;233189;233190;233191;233192;233193;233194;233195;233196;233197;233198;233199;233200;233201;233202;233203;233204;233205;233206;233207;233208;233209;233210;233211;233212 142890;142891;142892;142893;142894;142895;142896;142897;142898;142899;142900;142901;142902;142903 142893 14 LGPSSLK Unmodified 700.41194 0.41194006 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.029 15.556 2 0.0023307 4282 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 114.19 75.164 3595500000 2126100000 69483000 69068000 2176400 0 1647300 0 178320000 193290000 36337000 29487000 33190000 136730000 111590000 103540000 6933400 5282100 6088700 158100000 158020000 145420000 9056700 9702200 5983800 12429 664 12112 233213;233214;233215;233216;233217;233218;233219;233220;233221;233222;233223;233224;233225;233226;233227;233228;233229;233230;233231;233232;233233;233234 142904;142905;142906;142907;142908 142904 5 LGPVYSVR Unmodified 889.50215 0.50215205 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 22.075 22.127 2 0.0035904 9472 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.862 73.935 662580000 67314000 54976000 54392000 1017300 0 916210 70405000 60202000 0 0 0 0 55169000 51120000 59267000 0 0 0 57154000 65693000 64953000 0 0 0 12430 803 12113 233235;233236;233237;233238;233239;233240;233241;233242;233243;233244;233245;233246;233247 142909 142909 1 LGPYEFICTGR Unmodified 1311.6282 0.6281572 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 39.628 37.755 2 0.012419 18416 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 61.353 30.783 141040000 0 0 0 0 0 0 43331000 46286000 46965000 0 0 0 2035300 2423900 0 0 0 0 0 0 0 0 0 0 12431 1755;1756 12114 233248;233249;233250;233251;233252;233253;233254;233255 142910;142911;142912;142913;142914 142912 5 LGPYEFICTGRPDEGIPAVCFK Unmodified 2525.2083 0.20830158 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 3 3 1 1 1 3 3 3 2 3 2 1 2 1 48.524 47.167 2;3;4 5.8218E-28 23225 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 202.18 191.33 25752000000 2758600000 2681900000 2496400000 6384700 6893600 6305600 5400000000 5790400000 5230600000 0 0 0 277080000 252960000 246930000 0 0 0 3474100 310150000 284440000 0 0 0 12432 1755;1756 12115 233256;233257;233258;233259;233260;233261;233262;233263;233264;233265;233266;233267;233268;233269;233270;233271;233272;233273;233274;233275;233276;233277;233278;233279;233280;233281;233282;233283;233284;233285;233286;233287 142915;142916;142917;142918;142919;142920;142921;142922;142923;142924;142925;142926;142927;142928;142929;142930;142931;142932;142933;142934;142935;142936;142937;142938;142939;142940 142922 26 LGQDAAPEK Unmodified 927.46616 0.46616048 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.041 11.899 2 0.00038023 2975 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 111.74 103.06 876170000 113660000 118040000 0 632420 0 588420 102360000 95074000 100590000 0 0 0 58929000 44926000 55553000 0 0 0 67770000 59653000 58396000 0 0 0 12433 1100 12116 233288;233289;233290;233291;233292;233293;233294;233295;233296;233297;233298;233299;233300 142941;142942;142943 142941 3 LGQDQLLSLAGGDTAVTIK Unmodified 1899.0313 0.031306713 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 1 1 47.601 46.184 2;3 5.0041E-10 21766 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 160.27 154.67 720970000 128390000 122400000 107230000 0 0 0 70920000 72574000 61100000 0 0 0 17315000 30059000 23352000 0 0 0 37536000 25710000 24387000 0 0 0 12434 1420 12117 233301;233302;233303;233304;233305;233306;233307;233308;233309;233310;233311;233312;233313;233314;233315;233316;233317;233318;233319;233320;233321 142944;142945;142946;142947;142948;142949;142950;142951;142952;142953;142954;142955;142956;142957;142958 142956 15 LGQFSSAETQR Unmodified 1222.5942 0.59421454 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.056 16.872 2 3.4605E-20 5806 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 243.65 229.45 534570000 46592000 50766000 38628000 0 0 0 49839000 53244000 49944000 0 0 0 37075000 35526000 33732000 0 0 0 55051000 42822000 41347000 0 0 0 12435 164 12118 233322;233323;233324;233325;233326;233327;233328;233329;233330;233331;233332;233333 142959;142960;142961;142962;142963;142964;142965;142966;142967;142968;142969;142970 142967 12 LGQLLIDYLR Unmodified 1202.7023 0.70230842 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 50.539 49.161 2 0.00025317 24129 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.37 111.01 234500000 24082000 20961000 21161000 0 993770 0 22033000 18162000 18638000 0 0 0 13595000 14789000 15568000 0 0 0 21628000 24438000 18456000 0 0 0 12436 1728 12119 233334;233335;233336;233337;233338;233339;233340;233341;233342;233343;233344;233345;233346 142971;142972;142973;142974;142975;142976;142977 142972 1 LGQSATTLSGGEAQR Unmodified 1474.7376 0.73758431 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 15.735 16.295 2;3 3.8209E-16 5059 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 202.05 183.31 356580000 22813000 21395000 19447000 1991800 1768400 2102300 24348000 22515000 20570000 5267800 6123000 6511000 17874000 18094000 23119000 25041000 23457000 19884000 20404000 18224000 23291000 4411600 3830100 4094100 12437 222 12120 233347;233348;233349;233350;233351;233352;233353;233354;233355;233356;233357;233358;233359;233360;233361;233362;233363;233364;233365;233366;233367;233368;233369;233370;233371;233372 142978;142979;142980;142981;142982;142983;142984;142985;142986;142987;142988;142989;142990;142991;142992;142993;142994 142992 17 LGSAIVAK Unmodified 757.46979 0.46978929 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.009 14.851 2 0.0034654 4899 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.906 48.86 270220000 80423000 73124000 71471000 0 0 0 6577800 7590200 7712900 0 0 0 3758800 5649400 3862700 0 0 0 5301300 0 4744400 0 0 0 12438 71 12121 233373;233374;233375;233376;233377;233378;233379;233380;233381;233382;233383 142995;142996;142997 142995 3 LGSFLDMSDDDRDFHIDINIK Unmodified 2465.1533 0.15328912 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.067 48.66 4 0.00012545 23986 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 70.094 68.965 162260000 12918000 7880100 7669700 0 0 0 18252000 14502000 13728000 0 0 0 15350000 11661000 13504000 0 0 0 15678000 16658000 14456000 0 0 0 12439 1471 12122 233384;233385;233386;233387;233388;233389;233390;233391;233392;233393;233394;233395 142998;142999;143000;143001;143002;143003 143000 6 LGSIGSDLGASIK Unmodified 1216.6663 0.66631685 1732 P69428 tatA Sec-independent protein translocase protein TatA yes yes 0 0 0 By MS/MS By MS/MS 1 1 31.894 30.091 2 6.2502E-07 14581 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.63 91.543 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12440 1732 12123 233396;233397 143004;143005 143004 2 LGSNSLAELVVFGR Unmodified 1460.7987 0.798728 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 51.603 50.465 2;3 4.4427E-68 20195 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 321.92 266.94 1958900000 25181000 25498000 28782000 8355300 9069600 7754200 270790000 221830000 221350000 82264000 73620000 88733000 172270000 179210000 160630000 21677000 17430000 20788000 90461000 90909000 86594000 19824000 18862000 16976000 12441 25 12124 233398;233399;233400;233401;233402;233403;233404;233405;233406;233407;233408;233409;233410;233411;233412;233413;233414;233415;233416;233417;233418;233419;233420;233421;233422;233423;233424;233425;233426;233427;233428;233429;233430;233431;233432;233433;233434;233435;233436;233437;233438;233439;233440;233441;233442;233443;233444 143006;143007;143008;143009;143010;143011;143012;143013;143014;143015;143016;143017;143018;143019;143020;143021;143022;143023;143024;143025;143026;143027;143028;143029;143030;143031;143032;143033;143034;143035;143036;143037;143038;143039;143040;143041;143042;143043;143044 143014 35 LGSPGEYVDYAASK Unmodified 1455.6882 0.6881745 1599 P52037 ygfF Uncharacterized oxidoreductase YgfF yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29 27.744 2 0.00025905 12881 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 96.103 92.055 117860000 7166900 9092200 9119200 0 0 0 10212000 11986000 10987000 0 0 0 7555300 8774400 7677200 0 0 0 13184000 9029100 13081000 0 0 0 12442 1599 12125 233445;233446;233447;233448;233449;233450;233451;233452;233453;233454;233455;233456 143045;143046;143047;143048;143049 143047 5 LGSQFHIPHGLANALLICNVIR Unmodified 2442.3318 0.33180303 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1 1 1 3 2 2 2 2 2 1 1 1 2 2 2 2 2 2 48.29 46.981 2;3;4 2.0232E-15 22065 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 148.01 146.4 2645900000 258370000 0 148480000 81164000 115950000 93724000 207450000 201630000 207780000 92531000 94709000 93663000 91082000 63241000 79210000 9864000 8877700 11355000 120830000 105600000 105290000 162630000 138350000 154100000 12443 548 12126 233457;233458;233459;233460;233461;233462;233463;233464;233465;233466;233467;233468;233469;233470;233471;233472;233473;233474;233475;233476;233477;233478;233479;233480;233481;233482;233483;233484;233485;233486;233487;233488;233489;233490;233491;233492;233493;233494;233495 143050;143051;143052;143053;143054;143055;143056;143057;143058;143059;143060;143061;143062;143063;143064;143065;143066;143067;143068;143069;143070;143071;143072;143073;143074;143075;143076;143077;143078;143079;143080;143081;143082;143083;143084;143085 143081 36 LGSQIYAMAGMQTR Unmodified 1525.7381 0.73811836 661 P0ABJ1 cyoA Cytochrome bo(3) ubiquinol oxidase subunit 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 3 2 2 2 2 2 2 3 2 3 2 1 2 2 2 2 2 2 3 2 34.779 33.225 2;3 7.5049E-07 16287 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 162.49 133.43 447280000 14890000 10576000 14101000 6351900 9589900 7759400 27062000 18783000 20680000 17829000 16949000 18332000 27257000 28646000 21919000 4878300 3942700 3385000 39482000 40945000 34602000 21717000 20016000 17584000 12444 661 12127 233496;233497;233498;233499;233500;233501;233502;233503;233504;233505;233506;233507;233508;233509;233510;233511;233512;233513;233514;233515;233516;233517;233518;233519;233520;233521;233522;233523;233524;233525;233526;233527;233528;233529;233530;233531;233532;233533;233534;233535;233536;233537;233538;233539;233540;233541;233542;233543;233544;233545 143086;143087;143088;143089;143090;143091;143092;143093;143094;143095;143096;143097;143098;143099;143100;143101;143102;143103;143104 143089 19 LGTAEIESALVAHPK Unmodified 1534.8355 0.83550744 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 31.893 30.557 2;3 6.3014E-15 14269 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.99 177.04 4109100000 1374300000 1321500000 1261300000 1900900 2063500 3034200 12756000 12395000 10687000 0 0 0 10470000 10258000 11052000 0 0 0 25997000 23476000 27951000 0 0 0 12445 1305 12128 233546;233547;233548;233549;233550;233551;233552;233553;233554;233555;233556;233557;233558;233559;233560;233561;233562;233563 143105;143106;143107;143108;143109;143110;143111;143112;143113;143114;143115;143116;143117;143118;143119;143120 143114 16 LGTALAMAVDHEINMVSLVR Unmodified 2139.118 0.11803001 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.219 50.897 3 1.1706E-23 20244 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 194.92 185.98 1070300000 0 0 0 28838000 35985000 34829000 58178000 65896000 70422000 56895000 43402000 47407000 60764000 77460000 61583000 0 0 0 106620000 90026000 97005000 49051000 41893000 44010000 12446 1383 12129 233564;233565;233566;233567;233568;233569;233570;233571;233572;233573;233574;233575;233576;233577;233578;233579;233580;233581 143121;143122;143123;143124;143125;143126;143127;143128;143129;143130;143131;143132;143133;143134;143135;143136;143137;143138;143139 143128 19 LGTALAMAVDHEINMVSLVR Oxidation (M) 2155.1129 0.11294463 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.617 48.203 3 0.041974 19478 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 40.432 35.905 26998000 0 0 0 3183000 3114900 0 0 0 4254500 0 3315400 2733000 0 0 0 0 0 0 4867800 0 3066900 0 0 2462800 12447 1383 12129 233582;233583;233584;233585;233586;233587;233588;233589 143140 143140 541 0 LGTDGLQLYSSGK Unmodified 1337.6827 0.68269519 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.685 30.277 2 1.1254E-32 14611 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 226.29 167.13 592330000 42169000 47669000 41513000 2499500 2496300 2288700 0 0 91428000 0 0 0 49958000 39595000 49248000 0 0 0 70900000 69382000 68831000 5335700 3764400 5257800 12448 1916 12130 233590;233591;233592;233593;233594;233595;233596;233597;233598;233599;233600;233601;233602;233603;233604;233605;233606;233607 143141;143142;143143;143144;143145;143146;143147;143148;143149;143150;143151;143152 143141 9 LGTDKMPFFFNLK Unmodified 1556.8061 0.80612157 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 48.131 46.416 3 0.00015113 18539 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 67.749 66.166 68226000 0 0 0 3448800 4397300 0 0 0 0 15522000 13767000 15065000 0 0 0 0 0 0 0 0 0 6239800 5845800 3940400 12449 122 12131 233608;233609;233610;233611;233612;233613;233614;233615;233616 143153;143154;143155;143156;143157;143158;143159;143160;143161 143155 9 LGTEVVSDQQGTIAALLGASPGASTAAPIMLNLLEK Unmodified 3535.8807 0.88074966 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 2 2 2 2 1 2 2 2 55.774 54.352 3;4 3.3267E-17 21907 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 112.81 111.22 131670000 0 0 0 2789500 1981600 1784700 0 0 0 2478200 8174200 8101600 0 0 4848900 0 0 0 17697000 12940000 0 28674000 24786000 17413000 12450 1435 12132 233617;233618;233619;233620;233621;233622;233623;233624;233625;233626;233627;233628;233629;233630;233631;233632;233633;233634;233635 143162;143163 143163 2 LGTGANVFLASAELAAVAALIGK Unmodified 2156.2205 0.22050447 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 2 1 2 2 2 55.846 54.374 2;3 4.6394E-10 26838 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.27 118.19 458190000 38171000 42384000 37187000 0 0 0 22350000 9911800 11822000 0 0 0 43578000 41885000 14789000 0 0 0 62879000 68475000 64755000 0 0 0 12451 1444 12133 233636;233637;233638;233639;233640;233641;233642;233643;233644;233645;233646;233647;233648;233649;233650;233651;233652;233653 143164;143165;143166;143167;143168;143169;143170;143171;143172;143173;143174;143175;143176 143173 13 LGTLAAGK Unmodified 729.43849 0.43848916 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.82 13.674 2 0.0062633 4097 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 85.265 54.653 799690000 62913000 0 301650000 0 0 0 69068000 58748000 61493000 0 0 0 43159000 39582000 44202000 0 0 0 41172000 38273000 39431000 0 0 0 12452 904 12134 233654;233655;233656;233657;233658;233659;233660;233661;233662;233663;233664 143177;143178;143179;143180;143181 143179 5 LGTLDIV Unmodified 729.42726 0.42725577 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 1 1 1 2 2 2 2 2 2 2 1 1 46.429 44.777 1;2 0.051109 20874 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 71.067 71.067 1356500000 0 0 0 698560 0 0 105970000 101210000 94003000 51609000 50626000 48110000 121410000 107610000 123540000 0 0 0 140170000 171060000 140280000 35509000 31627000 33094000 12453 1442 12135 233665;233666;233667;233668;233669;233670;233671;233672;233673;233674;233675;233676;233677;233678;233679;233680;233681;233682;233683;233684;233685;233686;233687;233688;233689;233690 143182;143183;143184;143185;143186;143187;143188 143188 7 LGTQANNMHVWSDATGQK Unmodified 1956.9112 0.91120835 851 P0AEE1 dcrB Protein DcrB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 23 22.321 2;3 1.997E-67 9715 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 308.84 304.66 1189200000 6505100 38072000 40086000 9322600 9880300 0 100190000 103890000 107910000 57911000 29182000 40827000 76978000 68074000 77536000 0 13194000 14619000 96265000 106490000 121860000 26037000 24802000 19599000 12454 851 12136 233691;233692;233693;233694;233695;233696;233697;233698;233699;233700;233701;233702;233703;233704;233705;233706;233707;233708;233709;233710;233711;233712;233713;233714;233715;233716;233717;233718;233719;233720;233721;233722;233723;233724;233725;233726;233727;233728;233729;233730;233731 143189;143190;143191;143192;143193;143194;143195;143196;143197;143198;143199;143200;143201;143202;143203;143204;143205;143206;143207;143208;143209;143210;143211;143212;143213;143214 143201 26 LGTSTVSPIELENAVR Unmodified 1684.8996 0.89956426 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.556 38.696 2 3.5915E-07 15474 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 128.46 114.3 877010000 51810000 52416000 47757000 2864700 3347800 2733700 79614000 74652000 68174000 12342000 12157000 12953000 67201000 63622000 68973000 0 0 0 86520000 77866000 82423000 2816700 3630200 3139000 12455 1880 12137 233732;233733;233734;233735;233736;233737;233738;233739;233740;233741;233742;233743;233744;233745;233746;233747;233748;233749;233750;233751;233752 143215;143216;143217;143218 143216 2 LGTSVLTGGSR Unmodified 1046.572 0.57202253 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.343 20.758 2 6.026E-06 8056 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.44 112.65 841330000 83125000 88785000 83174000 0 0 0 72054000 65990000 62712000 0 0 0 56417000 49553000 48507000 0 0 0 80691000 78456000 71870000 0 0 0 12456 328 12138 233753;233754;233755;233756;233757;233758;233759;233760;233761;233762;233763;233764 143219;143220;143221;143222;143223 143221 4 LGTTTPAGYTDLLVNYTYR Unmodified 2118.0633 0.063335123 69 P02916 malF Maltose transport system permease protein MalF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.18 48.57 2 9.8842E-05 23879 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 103.85 0.19275 51552000 0 0 0 0 0 0 17408000 0 21922000 4079000 4575500 3566800 0 0 0 0 0 0 0 0 0 0 0 0 12457 69 12139 233765;233766;233767;233768;233769 143224;143225 143225 2 LGVALATAESVVDAIER Unmodified 1712.9309 0.93086439 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 1 1 1 54.536 53.133 2;3 1.3888E-19 25989 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 200.82 191.81 505060000 146850000 170380000 151790000 0 0 0 0 0 0 0 0 0 9918600 2808900 6857800 0 0 0 7078700 5429700 0 2233500 0 1714700 12458 1412 12140 233770;233771;233772;233773;233774;233775;233776;233777;233778;233779;233780;233781;233782;233783;233784;233785 143226;143227;143228;143229;143230;143231 143231 6 LGVANMHVTLADER Unmodified 1524.7719 0.77186132 1245 P24224 acpS Holo-[acyl-carrier-protein] synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.648 27.451 3 0.088367 12694 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 25.866 19.137 74240000 7892300 8390600 7035300 0 0 0 0 4858400 4757800 0 0 0 5793400 4519200 8160300 0 0 0 7269500 8617300 6946000 0 0 0 12459 1245 12141 233786;233787;233788;233789;233790;233791;233792;233793;233794;233795;233796 143232 143232 1 LGVAPVLALFSHQR Unmodified 1506.8671 0.86708234 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.421 47.018 3 1.457E-06 22833 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.84 120.06 60815000 0 4269500 0 0 0 0 4309400 4081700 3213400 0 0 0 0 4360800 0 0 0 0 14324000 14296000 11961000 0 0 0 12460 1055 12142 233797;233798;233799;233800;233801;233802;233803;233804 143233;143234 143233 2 LGVAQADFTGLPAK Unmodified 1386.7507 0.75071518 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 35.85 34.481 2 2.542E-06 15822 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 123.8 116.42 139790000 25405000 23205000 21505000 0 0 0 0 0 0 0 0 0 0 20650000 20715000 0 0 0 0 0 28314000 0 0 0 12461 1617 12143 233805;233806;233807;233808;233809;233810 143235 143235 1 LGVATPEK Unmodified 813.45962 0.45961853 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS 1 1 13.656 14.385 2 0.000132 4519 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 130.04 88.737 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12462 1073 12144 233811;233812 143236;143237 143237 2 LGVAYGSDLEK Unmodified 1150.587 0.58700389 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 25.39 24.056 2 0.00011332 8355 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 117.31 100.84 67848000 0 0 0 13077000 11513000 11883000 0 0 0 6718100 5993700 5234600 0 0 0 0 0 0 0 0 0 0 6411800 7016300 12463 1899 12145 233813;233814;233815;233816;233817;233818;233819;233820;233821 143238;143239;143240;143241;143242;143243;143244;143245 143241 7 LGVDTSTASSLLAEQLPK Unmodified 1828.9782 0.97820851 221 P09996 yidB Uncharacterized protein YidB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 2 2 1 1 2 2 2 2 2 2 1 47.802 46.322 2;3 3.2396E-06 22525 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.35 98.66 224400000 35491000 33314000 32495000 6410100 10537000 5613500 11231000 13045000 12588000 1606800 1422200 0 7355100 7801500 7558100 0 0 0 14100000 11254000 11009000 1572100 0 0 12464 221 12146 233822;233823;233824;233825;233826;233827;233828;233829;233830;233831;233832;233833;233834;233835;233836;233837;233838;233839;233840;233841;233842;233843;233844;233845;233846;233847;233848;233849;233850;233851;233852 143246;143247;143248;143249;143250 143250 5 LGVDVYAVSTDTHFTHK Unmodified 1888.9319 0.93192702 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 4 2 3 3 4 4 5 2 2 3 4 5 4 2 2 2 3 5 5 2 2 2 29.767 28.455 2;3;4 9.8534E-14 13410 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 198.33 192.72 59551000000 6781600000 5754100000 4830200000 50936000 48308000 55428000 6142700000 6083900000 5821800000 38352000 39743000 26616000 3048100000 3468400000 2934400000 21021000 16884000 17146000 4816300000 4730900000 4755400000 27378000 18924000 22704000 12465 827 12147 233853;233854;233855;233856;233857;233858;233859;233860;233861;233862;233863;233864;233865;233866;233867;233868;233869;233870;233871;233872;233873;233874;233875;233876;233877;233878;233879;233880;233881;233882;233883;233884;233885;233886;233887;233888;233889;233890;233891;233892;233893;233894;233895;233896;233897;233898;233899;233900;233901;233902;233903;233904;233905;233906;233907;233908;233909;233910;233911;233912;233913;233914;233915;233916;233917;233918;233919;233920;233921;233922;233923;233924;233925;233926;233927;233928;233929;233930;233931 143251;143252;143253;143254;143255;143256;143257;143258;143259;143260;143261;143262;143263;143264;143265;143266;143267;143268;143269;143270;143271;143272;143273;143274;143275;143276;143277;143278;143279;143280;143281;143282;143283;143284;143285;143286;143287;143288;143289;143290;143291;143292;143293;143294;143295;143296;143297;143298;143299;143300;143301;143302;143303;143304;143305;143306;143307;143308;143309;143310;143311;143312;143313;143314;143315;143316;143317;143318;143319;143320;143321;143322;143323;143324;143325;143326;143327;143328;143329;143330;143331;143332;143333;143334;143335;143336;143337;143338 143268 88 LGVEDVLLKPVK Unmodified 1308.8017 0.80168812 889 P0AEV1 rssB Regulator of RpoS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.417 35.724 3 0.00047389 17334 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.593 72.476 132470000 13331000 14274000 11329000 2493700 2715400 2495900 6866600 11490000 11879000 3273600 3457600 3260600 5038100 4111100 4711600 1550200 0 709110 9917400 5004400 9616700 1778800 1902500 1267100 12466 889 12148 233932;233933;233934;233935;233936;233937;233938;233939;233940;233941;233942;233943;233944;233945;233946;233947;233948;233949;233950;233951;233952;233953;233954 143339;143340;143341;143342;143343;143344;143345;143346 143344 8 LGVENDIALLNYLSSVTLSPADKD Unmodified 2546.3116 0.3115639 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 55.775 54.452 2;3 5.2535E-22 21906 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 234.82 229.45 1018500000 74905000 75428000 79214000 27678000 18800000 22458000 29747000 0 50671000 52657000 65565000 53543000 40532000 38093000 50320000 25142000 30651000 35373000 26779000 73253000 49252000 44941000 42613000 10883000 12467 1050 12149 233955;233956;233957;233958;233959;233960;233961;233962;233963;233964;233965;233966;233967;233968;233969;233970;233971;233972;233973;233974;233975;233976;233977;233978;233979;233980;233981;233982;233983;233984;233985;233986;233987;233988;233989;233990;233991;233992;233993;233994;233995;233996 143347;143348;143349;143350;143351;143352;143353;143354;143355;143356;143357;143358;143359;143360;143361;143362;143363 143358 17 LGVEVIAVDR Unmodified 1069.6132 0.61315906 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 33.526 32.238 2 0.00016229 15155 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.74 91.481 138350000 45414000 41463000 40155000 0 0 379220 0 0 0 0 0 0 3710300 3980500 3243800 0 0 0 0 0 0 0 0 0 12468 1412 12150 233997;233998;233999;234000;234001;234002;234003 143364;143365;143366 143366 3 LGVIAFNLGK Unmodified 1030.6175 0.61751616 1906 P77444 sufS Cysteine desulfurase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.796 41.022 2 0.00017373 20560 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 123.69 105.29 109600000 11133000 10176000 7137900 4779800 4360200 4617100 13752000 11107000 10269000 0 0 0 3184600 4501800 0 0 0 0 5495500 7006000 5003700 2711400 2440200 1924900 12469 1906 12151 234004;234005;234006;234007;234008;234009;234010;234011;234012;234013;234014;234015;234016;234017;234018;234019;234020 143367;143368;143369;143370;143371 143367 5 LGVLGDWSHPYLTMDFK Unmodified 1977.9659 0.96586969 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 52.357 51.103 2;3 3.9738E-24 24905 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 254.4 249.97 5606500000 655000000 627100000 614020000 0 2534200 2107000 338590000 332610000 320130000 0 2457800 0 331350000 335960000 370750000 0 0 0 536850000 553030000 584070000 0 0 0 12470 58 12152 234021;234022;234023;234024;234025;234026;234027;234028;234029;234030;234031;234032;234033;234034;234035;234036;234037;234038;234039;234040;234041;234042;234043;234044;234045;234046;234047 143372;143373;143374;143375;143376;143377;143378;143379;143380;143381;143382;143383;143384;143385;143386;143387;143388;143389;143390;143391 143378 20 LGVLGFEVDHER Unmodified 1369.699 0.69901396 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 3 2 1 1 2 2 3 1 1 3 2 2 1 1 1 2 2 2 1 1 1 34.815 33.349 2;3 2.2167E-12 16249 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 190.88 179.73 13046000000 693090000 630640000 581000000 4813800 3533900 3708300 1288100000 1157400000 1124400000 4602200 3634000 0 1432600000 1361000000 1207000000 5737800 5967300 5478000 1241300000 1171400000 1109200000 2917000 4601700 3752100 12471 224 12153 234048;234049;234050;234051;234052;234053;234054;234055;234056;234057;234058;234059;234060;234061;234062;234063;234064;234065;234066;234067;234068;234069;234070;234071;234072;234073;234074;234075;234076;234077;234078;234079;234080;234081;234082;234083;234084;234085;234086;234087 143392;143393;143394;143395;143396;143397;143398;143399;143400;143401;143402;143403;143404;143405;143406;143407;143408;143409;143410;143411;143412;143413;143414;143415;143416;143417;143418;143419;143420 143396 28 LGVLLNNQR Unmodified 1025.5982 0.5981777 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 24.28 23.273 2 0.0018263 9740 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 108.24 88.451 74857000 0 0 0 0 0 0 16777000 14304000 14763000 0 0 0 9707900 8578600 10726000 0 0 0 0 0 0 0 0 0 12472 953 12154 234088;234089;234090;234091;234092;234093 143421;143422;143423 143422 0 LGVNAGTR Unmodified 786.4348 0.43480077 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.322 12.937 2 0.00040535 2730 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 140.98 106.09 967680000 14215000 14146000 10705000 26802000 20960000 26805000 81152000 89671000 82923000 25584000 22460000 22637000 64313000 51165000 58485000 9055800 7307000 6787300 96104000 95551000 86895000 17658000 18585000 17716000 12473 1427 12155 234094;234095;234096;234097;234098;234099;234100;234101;234102;234103;234104;234105;234106;234107;234108;234109;234110;234111;234112;234113;234114;234115;234116;234117 143424;143425;143426;143427;143428;143429;143430;143431;143432;143433;143434;143435;143436 143434 10 LGVPVVCTVIGEGGSGGALAIGVGDK Unmodified 2381.2624 0.26244564 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 2 52.305 51.017 2;3 8.814E-32 24839 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 269.51 268.15 1152700000 71767000 53431000 49642000 0 0 0 104020000 102140000 115120000 5875200 2984300 3889800 72052000 85475000 93471000 0 0 0 141010000 128650000 107250000 5048700 4054000 6780700 12474 651 12156 234118;234119;234120;234121;234122;234123;234124;234125;234126;234127;234128;234129;234130;234131;234132;234133;234134;234135;234136;234137;234138;234139;234140;234141;234142;234143;234144;234145;234146;234147;234148 143437;143438;143439;143440;143441;143442;143443;143444;143445;143446;143447;143448;143449;143450;143451;143452;143453;143454;143455;143456;143457;143458;143459;143460 143446 24 LGVQEVEASIETLR Unmodified 1542.8253 0.82533668 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.33 45.9 3 0.0002148 18702 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 73.887 67.589 55866000 5736000 4630200 6089400 1298200 935270 1720200 0 0 0 3405300 3528700 2664800 5415100 0 0 0 0 1061100 6054200 4147800 5041300 1648800 1348900 1141300 12475 1083 12157 234149;234150;234151;234152;234153;234154;234155;234156;234157;234158;234159;234160;234161;234162;234163;234164;234165 143461;143462;143463;143464 143461 2 LGVRPEQAEAFYHR Unmodified 1671.8481 0.84813781 227 P0A6B4 alr Alanine racemase, biosynthetic yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.903 22.071 4 0.082042 8972 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 23.842 17.113 99295000 13152000 11618000 10491000 0 0 0 0 0 0 0 0 0 8856400 8655700 6460600 0 0 0 15030000 13592000 11439000 0 0 0 12476 227 12158 234166;234167;234168;234169;234170;234171;234172;234173;234174 143465;143466 143465 2 LGVSHTAIANK Unmodified 1109.6193 0.61930707 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.033 32.585 2;3 0.038888 15891 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 42.599 32.612 337790000 22187000 23557000 24471000 0 0 0 40067000 37901000 35208000 0 0 0 31304000 24571000 27493000 0 0 0 21755000 23228000 26048000 0 0 0 12477 162 12159 234175;234176;234177;234178;234179;234180;234181;234182;234183;234184;234185;234186;234187;234188;234189;234190;234191;234192;234193;234194;234195;234196;234197;234198 143467;143468;143469;143470;143471;143472;143473;143474;143475;143476;143477 143469 11 LGVSLLNR Unmodified 870.5287 0.52870115 1352 P30864 yafC Uncharacterized HTH-type transcriptional regulator YafC yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 30.054 28.759 2 0.0083814 13270 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 81.784 45.227 24100000 3996900 0 4853200 0 0 0 0 0 0 2364500 3188100 1726800 0 1428000 1765900 2130700 2645700 0 0 0 0 0 0 0 12478 1352 12160 234199;234200;234201;234202;234203;234204;234205;234206;234207;234208 143478;143479;143480;143481;143482 143482 5 LGVSQPTVAK Unmodified 998.57605 0.57604528 514 P0A9F1 mntR Transcriptional regulator MntR yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 2 2 1 2 2 1 2 2 1 33.8 32.382 2 0.0030688 13881 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 75.213 26.651 614350000 79710000 77622000 21840000 0 0 0 20927000 58828000 66563000 0 0 0 19914000 49286000 54260000 0 0 0 22374000 72047000 70516000 0 463230 0 12479 514 12161 234209;234210;234211;234212;234213;234214;234215;234216;234217;234218;234219;234220;234221;234222;234223;234224;234225;234226;234227;234228;234229 143483;143484;143485;143486;143487;143488;143489;143490;143491 143490 8 LGVVALDPDALSISGLHNYVK Unmodified 2180.1841 0.18411896 782 P0ADC6 lptG Lipopolysaccharide export system permease protein LptG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.517 49.194 3 0.0028322 19996 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 54.658 46.572 201260000 14086000 12914000 10425000 1555400 0 0 17750000 18575000 14067000 8165200 6235400 8501500 14456000 13737000 14708000 0 0 1156300 0 16615000 20556000 2648800 5104200 0 12480 782 12162 234230;234231;234232;234233;234234;234235;234236;234237;234238;234239;234240;234241;234242;234243;234244;234245;234246;234247 143492;143493 143492 2 LGVWQDILSR Unmodified 1185.6506 0.6506072 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.275 45.935 2 0.0029097 16494 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 87.308 85.25 166960000 13200000 11179000 11999000 2213000 4602500 2753200 0 19483000 0 0 0 0 17791000 19003000 14134000 0 0 0 0 26900000 23699000 0 0 0 12481 1260 12163 234248;234249;234250;234251;234252;234253;234254;234255;234256;234257;234258;234259 143494;143495;143496;143497 143494 2 LGWAAGK Unmodified 701.38606 0.38605966 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.92 18.416 2 0.019212 6716 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 77.944 77.944 772890000 60146000 54038000 40280000 0 0 0 106370000 99884000 0 2359000 0 0 97717000 0 83858000 0 0 0 0 114130000 111590000 898730 1613500 0 12482 1360 12164 234260;234261;234262;234263;234264;234265;234266;234267;234268;234269;234270;234271;234272;234273 143498;143499;143500;143501;143502;143503;143504;143505;143506 143502 9 LGWAPFR Unmodified 845.45481 0.45480793 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 36.851 35.551 2 0.00025707 16990 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 161.52 152.27 968490000 0 813890 0 0 0 0 74246000 63308000 65128000 0 0 0 71129000 75227000 64350000 29373000 19572000 19840000 162040000 154090000 169370000 0 0 0 12483 1124 12165 234274;234275;234276;234277;234278;234279;234280;234281;234282;234283;234284;234285;234286 143507;143508;143509;143510;143511;143512;143513;143514;143515 143512 9 LGWFNQDEVEMVAR Unmodified 1692.793 0.7929907 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 47.15 47.206 2;3 4.8612E-11 18001 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 207.34 201.5 105480000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47779000 29808000 27896000 0 0 0 0 0 0 12484 1004 12166 234287;234288;234289;234290;234291;234292 143516;143517;143518;143519;143520 143516 5 LGWHHPPFEIPK Unmodified 1456.7616 0.76155464 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 2 2 2 3 3 2 2 29.412 28.093 2;3;4 7.3698E-05 12975 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.43 93.206 2231200000 476630000 409470000 435010000 0 0 802240 202880000 219320000 214410000 0 0 1554400 34475000 39957000 41083000 0 0 0 51543000 49978000 54113000 0 0 0 12485 1423 12167 234293;234294;234295;234296;234297;234298;234299;234300;234301;234302;234303;234304;234305;234306;234307;234308;234309;234310;234311;234312;234313;234314;234315;234316;234317;234318;234319;234320;234321;234322;234323;234324;234325;234326;234327 143521;143522;143523;143524;143525;143526;143527;143528;143529;143530;143531;143532;143533;143534;143535;143536;143537;143538;143539;143540;143541;143542;143543;143544;143545;143546 143536 23 LGWLTPR Unmodified 841.48102 0.48102268 156 P07102 appA Periplasmic AppA protein;Phosphoanhydride phosphohydrolase;4-phytase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 33.058 31.515 2 0.0023399 15330 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.02 105.68 44365000 0 0 5899200 0 0 0 13143000 9868000 9763700 0 0 0 0 2290300 3401300 0 0 0 0 0 0 0 0 0 12486 156 12168 234328;234329;234330;234331;234332;234333;234334 143547;143548;143549 143548 3 LGWSHGDQEIFTR Unmodified 1544.7372 0.73719038 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 29.621 28.292 2;3 9.5573E-24 13090 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 268.98 262.74 6578400000 411080000 396020000 396500000 970050 1076300 1311600 588170000 577300000 578090000 0 1435700 0 565290000 541280000 477540000 0 0 0 683780000 673640000 683430000 0 1431900 0 12487 92 12169 234335;234336;234337;234338;234339;234340;234341;234342;234343;234344;234345;234346;234347;234348;234349;234350;234351;234352;234353;234354;234355;234356;234357;234358;234359;234360;234361;234362;234363 143550;143551;143552;143553;143554;143555;143556;143557;143558;143559;143560;143561;143562;143563;143564;143565;143566;143567;143568;143569;143570;143571;143572;143573 143563 24 LGYGAMQLAGPGVFGPPR Unmodified 1786.9189 0.91885991 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 48.765 47.526 2 1.8793E-09 23145 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.65 159.34 113480000 39633000 37936000 35910000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12488 1278 12170 234364;234365;234366 143574;143575;143576 143575 3 LGYGGHRDDLQR Unmodified 1385.68 0.68000985 1241 P24202 mrr Mrr restriction system protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.173 17.858 2 0.12746 6480 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 41.448 15.555 92700000 7011200 9678000 7030200 0 0 0 7089100 8383700 7159900 0 0 0 7864000 5945700 5326000 0 0 0 10232000 8546600 8433600 0 0 0 12489 1241 12171 234367;234368;234369;234370;234371;234372;234373;234374;234375;234376;234377;234378 143577 143577 1 LGYIAER Unmodified 820.4443 0.44430282 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.907 18.254 2 0.0061897 4999 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 96.51 72.538 208940000 42668000 0 36001000 9132200 0 10057000 0 0 51353000 7457300 6559400 0 0 0 31490000 0 0 960740 0 0 0 4514600 4811000 3935300 12490 1146 12172 234379;234380;234381;234382;234383;234384;234385;234386;234387;234388;234389;234390 143578;143579;143580;143581;143582 143578 4 LGYMQAFVEYGIR Unmodified 1545.765 0.76498503 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 1 2 2 1 2 1 2 2 2 1 2 2 2 50.245 48.911 2;3 2.7819E-07 23884 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.87 179.22 963600000 72839000 62763000 58986000 0 852920 2701100 88382000 81083000 91046000 0 0 832500 100540000 85987000 77888000 0 0 3959700 82835000 75718000 77186000 0 0 0 12491 876 12173 234391;234392;234393;234394;234395;234396;234397;234398;234399;234400;234401;234402;234403;234404;234405;234406;234407;234408;234409;234410;234411;234412;234413;234414;234415;234416;234417;234418 143583;143584;143585;143586;143587;143588;143589;143590;143591;143592;143593;143594;143595 143590 11 LGYNLVVLDSQNNPAK Unmodified 1743.9155 0.91554867 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 3 2 1 2 1 39.9 38.248 2;3 2.6928E-18 18572 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 244.16 233.84 4292800000 415610000 389130000 347210000 0 0 0 389150000 293190000 303070000 0 0 0 410460000 374850000 337740000 0 0 0 328080000 375980000 328360000 0 0 0 12492 72 12174 234419;234420;234421;234422;234423;234424;234425;234426;234427;234428;234429;234430;234431;234432;234433;234434;234435;234436 143596;143597;143598;143599;143600;143601;143602;143603;143604;143605;143606;143607;143608;143609;143610;143611;143612 143601 15 LGYNVFYHGQK Unmodified 1324.6564 0.65642086 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 24.245 23.377 2;3 0.00012524 9860 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 68.335 67.816 634160000 0 0 0 0 0 585190 57710000 54148000 58839000 0 0 0 54397000 53432000 61498000 2937000 0 0 92017000 108480000 90121000 0 0 0 12493 197 12175 234437;234438;234439;234440;234441;234442;234443;234444;234445;234446;234447 143613;143614;143615;143616;143617;143618 143616 6 LGYPITDDLDIYTR Unmodified 1653.825 0.82500233 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.63 47.398 2 3.2068E-11 23006 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 173.64 166.51 1282200000 32501000 33719000 28029000 40738000 48857000 56382000 42108000 36145000 36666000 133870000 70967000 44465000 60334000 58394000 50199000 36543000 37545000 29708000 63562000 62789000 57592000 72906000 72883000 75264000 12494 480 12176 234448;234449;234450;234451;234452;234453;234454;234455;234456;234457;234458;234459;234460;234461;234462;234463;234464;234465;234466;234467;234468;234469;234470;234471 143619;143620;143621;143622;143623;143624;143625;143626;143627;143628;143629;143630;143631;143632;143633;143634;143635;143636;143637;143638;143639;143640 143629 20 LGYQVVAVSGR Unmodified 1147.635 0.63495714 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 1 1 1 1 1 1 1 2 1 2 26.911 25.752 2 2.4863E-07 11196 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 162.49 135.36 1566100000 145950000 134120000 130140000 0 0 0 182070000 171290000 174210000 571790 0 491440 101040000 104210000 106730000 0 0 0 102010000 107820000 105420000 0 0 0 12495 1284 12177 234472;234473;234474;234475;234476;234477;234478;234479;234480;234481;234482;234483;234484;234485;234486;234487;234488;234489;234490;234491;234492 143641;143642;143643;143644;143645;143646;143647;143648;143649;143650;143651;143652 143650 12 LGYVTPLAAGAFPLTR Unmodified 1645.9192 0.91917749 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.286 49.963 2 3.4794E-09 24125 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 159.94 155.6 292960000 20635000 19848000 19182000 0 0 0 28641000 24884000 22791000 11634000 7448600 8838000 19442000 18660000 18846000 0 0 0 24979000 22921000 22120000 2088400 0 0 12496 1765 12178 234493;234494;234495;234496;234497;234498;234499;234500;234501;234502;234503;234504;234505;234506;234507;234508 143653;143654;143655;143656;143657;143658;143659;143660;143661;143662;143663;143664 143658 12 LHADYGGVVPELASR Unmodified 1582.8104 0.81035532 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 1 30.599 29.431 2;3 5.2697E-07 13734 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.28 146.9 73491000 0 0 0 1736700 1858600 0 0 0 0 0 0 0 0 0 0 1485800 0 0 0 54632000 13778000 0 0 0 12497 121 12179 234509;234510;234511;234512;234513;234514 143665;143666;143667 143667 3 LHAEFRPDQGAK Unmodified 1367.6946 0.69459728 1298 P27298 prlC Oligopeptidase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 2 2 2 3 2 2 3 12.116 12.948 2;3 7.2512E-18 3750 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 225.01 209.42 1370000000 124560000 140660000 132420000 0 0 0 134590000 133350000 117590000 0 0 0 98738000 74469000 79619000 0 0 0 121460000 101340000 111180000 0 0 0 12498 1298 12180 234515;234516;234517;234518;234519;234520;234521;234522;234523;234524;234525;234526;234527;234528;234529;234530;234531;234532;234533;234534;234535;234536;234537;234538;234539;234540;234541;234542 143668;143669;143670;143671;143672;143673;143674;143675;143676;143677;143678;143679;143680;143681;143682;143683;143684;143685;143686;143687;143688;143689 143675 22 LHALESGIQVDYVQETVEEHAAK Unmodified 2565.2711 0.27109607 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 1 1 35.601 33.929 3;4 6.3366E-22 16599 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.21 164.94 1276900000 69309000 81046000 114120000 15402000 12843000 13357000 100360000 89348000 102120000 11609000 13918000 15647000 76202000 80732000 74823000 3048100 0 3165200 128570000 118570000 130320000 10748000 6922700 4732900 12499 1146 12181 234543;234544;234545;234546;234547;234548;234549;234550;234551;234552;234553;234554;234555;234556;234557;234558;234559;234560;234561;234562;234563;234564;234565;234566;234567;234568;234569;234570;234571;234572;234573;234574;234575;234576;234577;234578;234579;234580;234581 143690;143691;143692;143693;143694;143695;143696;143697;143698;143699;143700;143701;143702;143703;143704;143705;143706;143707;143708;143709;143710;143711;143712;143713;143714;143715;143716;143717;143718;143719;143720;143721;143722;143723;143724 143697 35 LHAPDNAWVQQTR Unmodified 1534.7641 0.76407383 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 2 2 2 2 2 20.85 21.2 2;3 1.346E-05 8312 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.93 109.03 265310000 28294000 25577000 27310000 0 0 0 21450000 17560000 20681000 0 0 0 16704000 18144000 19374000 0 0 0 24400000 23611000 22208000 0 0 0 12500 1408 12182 234582;234583;234584;234585;234586;234587;234588;234589;234590;234591;234592;234593;234594;234595;234596;234597;234598;234599;234600;234601;234602;234603;234604 143725;143726;143727;143728;143729;143730;143731;143732;143733;143734;143735;143736;143737;143738;143739 143734 13 LHDMEVVHISFER Unmodified 1610.7875 0.78751139 1369 P31473 ravA ATPase RavA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.051 28.695 4 0.10524 12782 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 28.632 27.11 57376000 4810700 3589000 5845800 0 0 0 5568700 7893600 6515900 0 0 0 4479100 4738200 3106400 0 0 0 4027700 2941000 3860300 0 0 0 12501 1369 12183 234605;234606;234607;234608;234609;234610;234611;234612;234613;234614;234615;234616 143740;143741 143741 2 LHDVSEEVHR Unmodified 1219.5945 0.59454889 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 3 3 2 2 2 2 2 2 2 11.532 12.089 1;2;3 2.7845E-31 3216 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 279.79 270.92 15255000000 214440000 226920000 197640000 4250300 5150100 3226800 149260000 119330000 137520000 44897000 37538000 12479000 130720000 85544000 92538000 5078600000 4007900000 4167500000 160080000 145770000 145070000 35586000 27262000 26066000 12502 36 12184 234617;234618;234619;234620;234621;234622;234623;234624;234625;234626;234627;234628;234629;234630;234631;234632;234633;234634;234635;234636;234637;234638;234639;234640;234641;234642;234643;234644;234645;234646;234647;234648;234649;234650;234651;234652;234653;234654;234655;234656;234657;234658;234659;234660;234661;234662 143742;143743;143744;143745;143746;143747;143748;143749;143750;143751;143752;143753;143754;143755;143756;143757;143758;143759;143760;143761;143762;143763;143764;143765;143766;143767;143768;143769;143770;143771;143772;143773;143774 143765 30 LHDYYKDEVVK Unmodified 1407.7034 0.70343063 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 14.065 14.664 2;3;4 6.7867E-10 3818 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 182.64 172.86 4818800000 632270000 639430000 517010000 17610000 17467000 20182000 234090000 242910000 249470000 51019000 48044000 36562000 245800000 277900000 247420000 29716000 28096000 25895000 437520000 364540000 352080000 32670000 39560000 31540000 12503 1644 12185 234663;234664;234665;234666;234667;234668;234669;234670;234671;234672;234673;234674;234675;234676;234677;234678;234679;234680;234681;234682;234683;234684;234685;234686;234687;234688;234689;234690;234691;234692;234693;234694;234695;234696;234697;234698;234699;234700;234701;234702;234703;234704;234705;234706;234707;234708;234709;234710;234711;234712;234713;234714;234715;234716;234717;234718;234719;234720;234721;234722;234723;234724;234725;234726;234727;234728;234729;234730;234731;234732;234733;234734 143775;143776;143777;143778;143779;143780;143781;143782;143783;143784;143785;143786;143787;143788;143789;143790;143791;143792;143793;143794;143795;143796;143797;143798;143799;143800;143801;143802;143803;143804;143805;143806;143807;143808;143809;143810;143811;143812;143813;143814;143815;143816;143817;143818;143819;143820;143821;143822;143823 143798 49 LHDYYKDEVVKK Unmodified 1535.7984 0.79839365 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 1 2 2 3 3 3 2 2 3 3 3 3 3 3 3 3 3 12.203 12.777 2;3;4 1.08E-07 3001 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 181.68 178.04 1609700000 101820000 90607000 82692000 41096000 40129000 44478000 4771200 31718000 21840000 115810000 103500000 92239000 30867000 0 18172000 106380000 96725000 88904000 74558000 77314000 76042000 82834000 99831000 87406000 12504 1644 12186 234735;234736;234737;234738;234739;234740;234741;234742;234743;234744;234745;234746;234747;234748;234749;234750;234751;234752;234753;234754;234755;234756;234757;234758;234759;234760;234761;234762;234763;234764;234765;234766;234767;234768;234769;234770;234771;234772;234773;234774;234775;234776;234777;234778;234779;234780;234781;234782;234783;234784;234785;234786;234787;234788;234789;234790;234791;234792;234793;234794;234795;234796;234797 143824;143825;143826;143827;143828;143829;143830;143831;143832;143833;143834;143835;143836;143837;143838;143839;143840;143841;143842;143843;143844;143845;143846;143847;143848;143849;143850;143851;143852;143853;143854;143855;143856 143830 31 LHEAVQEIVPHLNEHDHK Unmodified 2144.0763 0.076299846 1881 P77148 ydhS Uncharacterized protein YdhS yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 18.02 18.54 4 8.5508E-05 6798 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 71.263 67.769 71094000 0 24817000 15283000 0 0 0 12963000 7544200 10487000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12505 1881 12187 234798;234799;234800;234801;234802 143857;143858 143858 2 LHECVTMLR Unmodified 1157.5685 0.56853383 1499 P37767 yfhH Uncharacterized HTH-type transcriptional regulator YfhH yes yes 0 0 0 By matching By MS/MS 1 1 17.579 17.992 3 0.00083482 5052 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 70.856 59.323 6766500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 571010 0 0 6195500 0 0 0 0 0 0 12506 1499 12188 234803;234804 143859 143859 1 LHEEAMALPSEEEFAER Unmodified 1986.8993 0.89930626 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 32.503 31.256 2;3 4.7148E-09 14671 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 164.64 158.8 347330000 40356000 38392000 38153000 6050700 5598600 5651000 13958000 14358000 15129000 0 0 0 20884000 17208000 17964000 1667100 1206000 1998500 30313000 33990000 35355000 5212600 0 3882600 12507 1183 12189 234805;234806;234807;234808;234809;234810;234811;234812;234813;234814;234815;234816;234817;234818;234819;234820;234821;234822;234823;234824;234825;234826;234827;234828;234829;234830;234831;234832;234833;234834;234835;234836 143860;143861;143862;143863;143864;143865;143866 143863 7 LHEFGGDITK Unmodified 1115.5611 0.56112349 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 3 1 2 2 2 2 2 2 16.168 16.962 2;3 4.2657E-05 5961 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 112.36 99.741 1436400000 264180000 243520000 256390000 2421700 2320600 0 162040000 162650000 177720000 0 0 807270 31270000 25941000 26860000 0 0 0 30277000 28166000 21844000 0 0 0 12508 757 12190 234837;234838;234839;234840;234841;234842;234843;234844;234845;234846;234847;234848;234849;234850;234851;234852;234853;234854;234855;234856;234857;234858;234859;234860;234861;234862;234863;234864 143867;143868;143869;143870;143871;143872;143873;143874;143875;143876;143877;143878;143879;143880;143881;143882;143883 143871 11 LHELADYEVIQLNDTHPTIAIPELLR Unmodified 3012.592 0.59203628 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 2 1 51.538 50.364 3;4 1.9959E-72 23683 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 281.28 278.87 1577200000 51386000 39565000 45702000 0 0 0 169230000 163090000 150800000 33947000 33185000 40393000 135440000 111050000 95946000 23511000 24512000 25341000 121830000 127890000 154890000 9880000 9557000 10037000 12509 30 12191 234865;234866;234867;234868;234869;234870;234871;234872;234873;234874;234875;234876;234877;234878;234879;234880;234881;234882;234883;234884;234885;234886;234887;234888;234889;234890;234891;234892;234893;234894;234895;234896;234897;234898;234899;234900;234901;234902 143884;143885;143886;143887;143888;143889;143890;143891;143892;143893;143894;143895;143896;143897;143898;143899;143900;143901;143902;143903;143904;143905;143906;143907;143908;143909;143910;143911;143912;143913 143908 30 LHEQMADYNALGITVR Unmodified 1829.9094 0.90941744 858 P0AEG6 dsbC Thiol:disulfide interchange protein DsbC yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 33.686 32.246 2;3 7.3694E-19 15771 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 198.23 181.7 652540000 52814000 42361000 38791000 0 0 0 63741000 69291000 61891000 0 0 0 45419000 44485000 41391000 0 0 0 65757000 68373000 58230000 0 0 0 12510 858 12192 234903;234904;234905;234906;234907;234908;234909;234910;234911;234912;234913;234914;234915;234916;234917;234918;234919;234920;234921;234922;234923;234924;234925;234926 143914;143915;143916;143917;143918;143919;143920;143921;143922;143923;143924;143925;143926;143927;143928;143929;143930 143915 13 LHFEYVVCK Unmodified 1193.5903 0.59031513 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.524 24.353 3 0.045614 11092 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 48.283 43.926 61563000 0 0 1992000 0 0 0 7191400 5329400 6978600 0 1722400 0 4327900 5541400 5291600 0 0 0 7961900 6684600 7084600 0 1457200 0 12511 1494 12193 234927;234928;234929;234930;234931;234932;234933;234934;234935;234936;234937;234938 143931;143932;143933;143934 143932 0 LHFGSYHDVDSSELAFK Unmodified 1950.9112 0.91119158 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 1 1 1 4 4 3 1 1 1 4 4 3 2 2 1 31.892 30.512 2;3;4 3.0652E-51 14383 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 336.1 330.82 38563000000 3286200000 2786500000 2900400000 21757000 23006000 25995000 3073300000 2877800000 2838900000 13990000 14642000 10529000 2465200000 2712400000 2557900000 8564500 4131600 4100800 3977700000 4790700000 4122900000 13588000 21394000 11363000 12512 264 12194 234939;234940;234941;234942;234943;234944;234945;234946;234947;234948;234949;234950;234951;234952;234953;234954;234955;234956;234957;234958;234959;234960;234961;234962;234963;234964;234965;234966;234967;234968;234969;234970;234971;234972;234973;234974;234975;234976;234977;234978;234979;234980;234981;234982;234983;234984;234985;234986;234987;234988;234989;234990;234991;234992;234993;234994;234995 143935;143936;143937;143938;143939;143940;143941;143942;143943;143944;143945;143946;143947;143948;143949;143950;143951;143952;143953;143954;143955;143956;143957;143958;143959;143960;143961;143962;143963;143964;143965;143966;143967;143968;143969;143970;143971;143972;143973;143974;143975;143976;143977;143978;143979;143980;143981;143982;143983;143984;143985 143955 51 LHGAHTVELNLEPSQVGNEFAEK Unmodified 2518.2452 0.24521567 1799 P75960 cobB NAD-dependent protein deacylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 31.491 30.029 3;4 4.927E-15 14076 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.12 123.27 960410000 92458000 104990000 86811000 0 0 0 74853000 71649000 72661000 13745000 10416000 9940200 63730000 57887000 65813000 0 1118900 1620500 89808000 74163000 68758000 0 0 0 12513 1799 12195 234996;234997;234998;234999;235000;235001;235002;235003;235004;235005;235006;235007;235008;235009;235010;235011;235012;235013;235014;235015;235016;235017;235018;235019;235020;235021;235022;235023;235024;235025;235026;235027 143986;143987;143988;143989;143990;143991;143992;143993;143994;143995;143996;143997;143998 143997 13 LHGDLHDFMQWK Unmodified 1525.7136 0.71361816 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 1 1 2 2 2 1 1 1 2 2 2 33.072 31.714 3;4 0.00063278 15118 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 72.152 71.005 213750000 11869000 12740000 10490000 0 186850 495470 9187000 13349000 14243000 1437700 0 1514700 16261000 15031000 14653000 8085700 13639000 14974000 17492000 19313000 18789000 0 0 0 12514 395 12196 235028;235029;235030;235031;235032;235033;235034;235035;235036;235037;235038;235039;235040;235041;235042;235043;235044;235045;235046;235047;235048;235049;235050;235051;235052;235053;235054;235055;235056 143999;144000;144001;144002;144003;144004;144005;144006 144001 8 LHGEDVSLDALKR Unmodified 1451.7732 0.77324153 1201 P22634 murI Glutamate racemase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 20.664 21.062 3;4 0.056367 7974 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 36.955 34.32 172720000 15859000 14829000 13301000 0 0 0 12574000 12360000 16733000 0 0 0 11681000 10475000 11028000 0 0 0 19867000 20247000 13768000 0 0 0 12515 1201 12197 235057;235058;235059;235060;235061;235062;235063;235064;235065;235066;235067;235068;235069;235070;235071;235072;235073;235074;235075;235076;235077;235078;235079;235080 144007;144008;144009;144010 144010 3 LHGENIPAR Unmodified 1005.5356 0.53557744 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.621 12.253 2 0.00021821 3307 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.98 117.75 188650000 9714100 8982700 10070000 0 0 0 14980000 13849000 18345000 0 1074900 0 16864000 13831000 16199000 4278200 3120900 2768000 16846000 19659000 18064000 0 0 0 12516 1102 12198 235081;235082;235083;235084;235085;235086;235087;235088;235089;235090;235091;235092;235093;235094;235095;235096 144011;144012;144013 144012 3 LHGGEPANFLDVGGGATK Unmodified 1738.8638 0.86384745 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 3 1 28.366 27.128 2;3 5.2456E-29 12232 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 254.58 249.48 8852500000 1091700000 1014900000 946020000 3745700 3397700 0 337390000 361320000 325190000 2656900 1449800 1798600 431340000 471560000 486400000 1844500 1624900 1521700 1101100000 1198400000 1066900000 2169300 0 0 12517 392 12199 235097;235098;235099;235100;235101;235102;235103;235104;235105;235106;235107;235108;235109;235110;235111;235112;235113;235114;235115;235116;235117;235118;235119;235120;235121;235122;235123;235124;235125;235126;235127;235128;235129;235130;235131 144014;144015;144016;144017;144018;144019;144020;144021;144022;144023;144024;144025;144026;144027;144028;144029;144030;144031;144032;144033;144034;144035 144029 22 LHGYLPSR Unmodified 941.5083 0.50830006 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 14.512 15.07 2 9.5323E-05 3433 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 162.07 117.46 13613000000 0 3230500 0 1532000000 1606600000 1665700000 734870000 718490000 670830000 106400000 112820000 92718000 350120000 338930000 339900000 45713000 17270000 24663000 658680000 657700000 612710000 1509300000 1014800000 799650000 12518 939 12200 235132;235133;235134;235135;235136;235137;235138;235139;235140;235141;235142;235143;235144;235145;235146;235147;235148;235149;235150;235151;235152;235153;235154;235155;235156;235157;235158 144036;144037;144038;144039;144040;144041;144042;144043;144044;144045;144046;144047;144048;144049;144050;144051;144052;144053;144054;144055;144056;144057;144058;144059;144060;144061;144062;144063;144064;144065;144066;144067;144068 144059 32 LHGYLPSRQPNFTEK Unmodified 1785.9162 0.91621738 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 2 1 1 3 3 3 18.952 19.154 2;3;4 3.1942E-09 5712 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 155.86 150.01 1767600000 0 0 0 366060000 405620000 445440000 2358800 0 0 5211500 1859100 2451500 0 0 0 0 0 0 0 0 0 183200000 174040000 181390000 12519 939 12201 235159;235160;235161;235162;235163;235164;235165;235166;235167;235168;235169;235170;235171;235172;235173;235174;235175;235176;235177;235178;235179;235180;235181 144069;144070;144071;144072;144073;144074;144075;144076;144077;144078;144079;144080;144081;144082;144083 144075 15 LHGYLPSRQPNFTEKLELPSLQDFGALLEEQSK Unmodified 3783.9472 0.94718974 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 51.494 50.288 4;5 2.0936E-25 18207 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 172.11 172.1 628250000 0 0 0 169050000 164650000 124870000 0 0 0 0 0 0 0 0 0 0 0 1783400 0 0 0 57341000 49112000 61439000 12520 939 12202 235182;235183;235184;235185;235186;235187;235188;235189;235190;235191;235192;235193;235194 144084;144085;144086;144087;144088;144089;144090;144091;144092;144093 144091 10 LHHANDTDSFSATNVH Unmodified 1764.7816 0.78157439 1853 P76346 mtfA Protein MtfA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.495 13.259 3 0.046936 3951 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 37.438 33.688 94594000 9905900 9274700 0 0 1670900 2285700 10023000 8345600 10776000 4575100 3991500 0 0 9704700 10524000 0 0 0 6071400 0 7445300 0 0 0 12521 1853 12203 235195;235196;235197;235198;235199;235200;235201;235202;235203;235204;235205;235206;235207 144094 144094 1 LHIAAPTAGK Unmodified 977.56581 0.56581494 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 14.691 15.138 2 0.078142 4174 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 47.603 45.404 13948000 0 0 0 0 0 0 0 0 0 2405500 3338000 3310400 0 2376300 2517900 0 0 0 0 0 0 0 0 0 12522 1877 12204 235208;235209;235210;235211;235212 144095 144095 0 LHIIEPMGFAWDDKR Unmodified 1826.9138 0.91377454 1023 P0AGJ7 trmL tRNA (cytidine(34)-2'-O)-methyltransferase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 2 1 2 1 1 1 1 1 38.394 36.899 3;4 0.016026 17215 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 42.958 37.986 72989000 12567000 11920000 6034700 0 0 0 0 0 0 0 0 0 15324000 5534900 3753800 0 0 0 5666400 7258800 4929100 0 0 0 12523 1023 12205 235213;235214;235215;235216;235217;235218;235219;235220;235221;235222;235223;235224 144096;144097;144098 144097 1 LHILGVMEQAINAPR Unmodified 1660.9083 0.90829523 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 41.872 40.133 2;3 5.8816E-20 19671 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 248.09 242.37 3916400000 206930000 171950000 172710000 29049000 25535000 25200000 346240000 263260000 283470000 19832000 19952000 16242000 335310000 301290000 350790000 5958000 5009700 5726700 432310000 429110000 428260000 15013000 13571000 13679000 12524 107 12206 235225;235226;235227;235228;235229;235230;235231;235232;235233;235234;235235;235236;235237;235238;235239;235240;235241;235242;235243;235244;235245;235246;235247;235248;235249;235250;235251;235252;235253;235254;235255;235256;235257;235258;235259;235260;235261;235262;235263;235264;235265;235266;235267;235268 144099;144100;144101;144102;144103;144104;144105;144106;144107;144108;144109;144110;144111;144112;144113;144114;144115;144116;144117;144118;144119;144120;144121;144122;144123;144124;144125;144126;144127;144128;144129;144130;144131;144132;144133 144123 35 LHKPEEAAAMR Unmodified 1251.6394 0.63939059 717 P0ACB7 hemY Protein HemY yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.238 12.015 3 5.6337E-05 3082 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.95 92.766 183080000 8822500 0 11461000 2015800 1808400 2187200 21043000 25066000 19487000 0 0 5825900 16873000 12066000 12656000 0 0 0 16262000 0 22948000 2548700 2005600 0 12525 717 12207 235269;235270;235271;235272;235273;235274;235275;235276;235277;235278;235279;235280;235281;235282;235283;235284 144134;144135;144136;144137 144134 4 LHLIANEPGTYDGISASYSGPGFSGMK Unmodified 2768.3116 0.31158067 661 P0ABJ1 cyoA Cytochrome bo(3) ubiquinol oxidase subunit 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 2 1 1 1 1 2 2 1 1 1 2 2 2 1 2 1 41.898 40.167 2;3 7.9744E-23 19663 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 237.3 236.03 1650600000 0 57182000 56991000 22581000 21091000 21348000 101090000 94900000 83910000 43225000 44974000 42333000 122400000 86557000 5209500 9197200 10861000 0 227550000 193790000 240050000 56133000 52287000 56934000 12526 661 12208 235285;235286;235287;235288;235289;235290;235291;235292;235293;235294;235295;235296;235297;235298;235299;235300;235301;235302;235303;235304;235305;235306;235307;235308;235309;235310;235311;235312;235313;235314;235315 144138;144139;144140;144141;144142;144143;144144;144145;144146;144147;144148;144149;144150;144151;144152;144153;144154;144155;144156;144157;144158 144149 21 LHLPTAPWQLLAER Unmodified 1643.9148 0.91476081 196 P09029 purK N5-carboxyaminoimidazole ribonucleotide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.918 47.587 3 8.2656E-06 23135 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.814 76.452 139860000 33234000 35134000 28860000 0 0 0 3792700 3118300 3463800 0 0 0 4037100 4223400 2713300 0 0 0 6937200 8067600 6283300 0 0 0 12527 196 12209 235316;235317;235318;235319;235320;235321;235322;235323;235324;235325;235326;235327 144159;144160;144161;144162 144160 3 LHLSEEVLSTLDGISR Unmodified 1767.9367 0.93667805 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 45.909 44.485 2;3 9.8409E-14 21633 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.09 166.25 265310000 48914000 64797000 49339000 0 0 0 10983000 12597000 9351100 1246700 1890000 0 6417800 5932100 8291100 5732000 6420800 9407900 0 5844500 5593900 4774000 3543900 4236500 12528 1278 12210 235328;235329;235330;235331;235332;235333;235334;235335;235336;235337;235338;235339;235340;235341;235342;235343;235344;235345;235346;235347;235348;235349;235350;235351 144163;144164 144164 2 LHLYQIWIMPEENGITPR Unmodified 2209.1354 0.13539463 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.465 49.12 3 1.2663E-07 17712 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 110.22 108.82 111370000 0 9445500 0 17337000 20114000 20800000 0 0 0 0 0 0 0 3319000 0 0 0 0 0 0 0 15221000 12940000 12197000 12529 1587 12211 235352;235353;235354;235355;235356;235357;235358;235359 144165;144166;144167;144168;144169;144170 144168 6 LHMGHVR Unmodified 848.44393 0.44392567 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.387 11.203 2 0.0019599 2596 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.76 95.757 790660000 64789000 52589000 48679000 0 0 0 79126000 68917000 79375000 0 0 0 66428000 58319000 53057000 0 0 0 75465000 67699000 76215000 0 0 0 12530 170 12212 235360;235361;235362;235363;235364;235365;235366;235367;235368;235369;235370;235371 144171;144172;144173;144174;144175;144176;144177;144178 144175 7 LHNASQLGK Unmodified 966.52468 0.52467841 1913 P77529 ydjN Uncharacterized symporter YdjN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.527 11.21 2 0.00026284 2642 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 121.09 90.034 114900000 8170500 5461000 5962700 0 0 0 8887900 10493000 5584400 0 0 0 12425000 8996000 11192000 0 1984800 3148600 9583500 11349000 11666000 0 0 0 12531 1913 12213 235372;235373;235374;235375;235376;235377;235378;235379;235380;235381;235382;235383;235384;235385 144179;144180 144179 2 LHNIEQQLLSMFGDTDGK Unmodified 2044.9888 0.98878997 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 3 3 3 3 3 3 3 49.228 47.883 2;3 6.9643E-15 25382 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 117.78 117.68 883570000 68122000 50831000 54638000 0 0 0 99851000 75701000 73337000 0 0 0 79327000 75675000 85585000 0 0 0 78955000 75857000 65687000 0 0 0 12532 1868 12214 235386;235387;235388;235389;235390;235391;235392;235393;235394;235395;235396;235397;235398;235399;235400;235401;235402;235403;235404;235405;235406;235407;235408;235409;235410;235411;235412;235413;235414;235415;235416;235417;235418;235419 144181;144182;144183;144184;144185;144186;144187;144188;144189;144190;144191;144192;144193;144194 144182 13 LHNIEQQLLSMFGDTDGKR Unmodified 2201.0899 0.089901 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.19 45.8 3;4 1.6713E-14 22850 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.39 149.06 1559000000 88986000 95541000 78325000 0 0 0 200500000 197900000 181520000 0 0 0 101840000 116040000 131670000 0 0 0 132740000 109930000 124020000 0 0 0 12533 1868 12215 235420;235421;235422;235423;235424;235425;235426;235427;235428;235429;235430;235431;235432;235433;235434;235435;235436;235437;235438;235439;235440;235441;235442;235443 144195;144196;144197;144198;144199;144200;144201;144202;144203;144204;144205;144206;144207;144208;144209;144210;144211;144212;144213 144195 18 LHNMEDLFGEVMVPTEEVVEIR Oxidation (M) 2601.2455 0.24547494 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 5 6 5 3 3 3 1 4 4 3 51.763 50.64 2;3;4 1.0497E-52 20774 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 260.25 241.42 4628600000 0 0 0 1850400 2589100 0 0 0 0 1350000000 1129600000 1039700000 0 0 0 38782000 107220000 106580000 0 1702800 0 325940000 266140000 258450000 12534 936 12216 235444;235445;235446;235447;235448;235449;235450;235451;235452;235453;235454;235455;235456;235457;235458;235459;235460;235461;235462;235463;235464;235465;235466;235467;235468;235469;235470;235471;235472;235473;235474;235475;235476;235477;235478;235479;235480;235481;235482 144214;144215;144216;144217;144218;144219;144220;144221;144222;144223;144224;144225;144226;144227;144228;144229;144230;144231;144232;144233;144234;144235;144236;144237;144238;144239;144240;144241;144242;144243;144244;144245;144246;144247;144248;144249;144250;144251;144252;144253;144254;144255;144256;144257 144225 427;428 44 LHNMEDLFGEVMVPTEEVVEIR Unmodified 2585.2506 0.25056032 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1 1 2 1 1 4 3 4 2 2 3 3 2 2 2 2 2 4 3 4 54.336 53.086 2;3;4 2.7914E-88 21174 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 402.46 399.97 49617000000 204090000 222830000 184380000 13078000 15943000 12389000 77151000 59254000 62101000 10492000000 9200000000 8966000000 231950000 204600000 219280000 1869200000 3057800000 2997000000 227530000 252030000 246020000 4233300000 3585000000 2984100000 12535 936 12216 235483;235484;235485;235486;235487;235488;235489;235490;235491;235492;235493;235494;235495;235496;235497;235498;235499;235500;235501;235502;235503;235504;235505;235506;235507;235508;235509;235510;235511;235512;235513;235514;235515;235516;235517;235518;235519;235520;235521;235522;235523;235524;235525;235526;235527;235528;235529;235530;235531;235532;235533;235534;235535;235536;235537;235538 144258;144259;144260;144261;144262;144263;144264;144265;144266;144267;144268;144269;144270;144271;144272;144273;144274;144275;144276;144277;144278;144279;144280;144281;144282;144283;144284;144285;144286;144287;144288;144289;144290;144291;144292;144293;144294;144295;144296;144297;144298 144277 40 LHNMEDLFGEVMVPTEEVVEIR 2 Oxidation (M) 2617.2404 0.24038957 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1 48.619 46.821 3 1.763E-10 18626 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 127.8 126.81 188930000 0 0 0 0 0 0 0 0 0 49303000 57408000 47028000 0 0 0 0 0 0 0 0 0 11702000 13705000 9780200 12536 936 12216 235539;235540;235541;235542;235543;235544;235545;235546;235547;235548 144299;144300;144301;144302;144303;144304;144305;144306;144307;144308;144309;144310;144311 144304 427;428 13 LHNPFLQDEMPVW Unmodified 1624.7708 0.77079869 1783 P75849 ycbL Uncharacterized protein YcbL yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 53.699 52.266 2 4.1144E-07 24787 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 148.52 144.99 569150000 74572000 70596000 65174000 0 2048100 0 25111000 22810000 27199000 0 0 0 48078000 38823000 45430000 0 0 0 49208000 51190000 48906000 0 0 0 12537 1783 12217 235549;235550;235551;235552;235553;235554;235555;235556;235557;235558;235559;235560;235561 144312;144313;144314;144315;144316;144317;144318;144319 144318 3 LHQCGLPK Unmodified 951.49602 0.49602082 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 2 1 2 2 11.202 11.913 2 0.00042035 2581 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 140.12 126.91 20707000000 268420000 309110000 241850000 16729000 19822000 20382000 159310000 160730000 167100000 2102500000 0 1852900000 159280000 175440000 158580000 5544500000 2803700000 3058900000 230990000 201130000 210130000 0 2845600000 0 12538 458 12218 235562;235563;235564;235565;235566;235567;235568;235569;235570;235571;235572;235573;235574;235575;235576;235577;235578;235579;235580;235581;235582;235583;235584;235585;235586;235587;235588;235589;235590;235591;235592 144320;144321;144322;144323;144324;144325;144326;144327;144328;144329;144330;144331;144332;144333;144334;144335;144336;144337;144338 144322 18 LHQCGLPKK Unmodified 1079.591 0.59098383 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 10.797 10.92 2 0.00025487 2001 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 126.28 121.96 864750000 0 0 0 0 0 0 0 0 0 59499000 55568000 58499000 0 0 0 297750000 110500000 65734000 0 0 0 83260000 70754000 63183000 12539 458 12219 235593;235594;235595;235596;235597;235598;235599;235600;235601 144339;144340;144341;144342;144343 144343 4 LHQGDYGK Unmodified 916.44028 0.44028008 1054 P10371 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 9.1257 9.877 2 0.010842 2231 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 77.741 77.741 9505500 0 2615100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2136600 2428700 2325100 0 0 0 12540 1054 12220 235602;235603;235604;235605 144344 144344 1 LHQNQVFGLTVPLITK Unmodified 1807.0356 0.03560423 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 44.058 42.543 2;3 5.9808E-31 21267 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 284.24 235.68 1363900000 110890000 125070000 126350000 0 0 0 147260000 126930000 123420000 0 0 0 102290000 82155000 69841000 0 0 0 123050000 122140000 104470000 0 0 0 12541 1024 12221 235606;235607;235608;235609;235610;235611;235612;235613;235614;235615;235616;235617;235618;235619;235620;235621;235622;235623;235624;235625;235626;235627;235628;235629 144345;144346;144347;144348;144349;144350;144351;144352;144353;144354;144355;144356;144357;144358;144359;144360;144361;144362;144363;144364;144365;144366;144367 144346 23 LHQSGYSLSGGQQQR Unmodified 1644.7968 0.79683052 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 12.537 13.096 2;3 1.3205E-35 3791 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 301.48 298.06 1996000000 0 0 3382500 0 0 0 128640000 139620000 146420000 95066000 93993000 81790000 169620000 143070000 126650000 21923000 15359000 20012000 209170000 228070000 220740000 57774000 44539000 50136000 12542 594 12222 235630;235631;235632;235633;235634;235635;235636;235637;235638;235639;235640;235641;235642;235643;235644;235645;235646;235647;235648;235649;235650;235651;235652;235653;235654;235655;235656;235657;235658;235659;235660;235661;235662;235663;235664 144368;144369;144370;144371;144372;144373;144374;144375;144376;144377;144378;144379;144380;144381;144382;144383;144384;144385;144386;144387;144388;144389;144390 144382 23 LHQWSDQPQFGLDFDNALSTTPQPNTWQR Unmodified 3426.6018 0.60176611 1936 P77739 yniA Uncharacterized protein YniA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.184 48.732 3 1.8812E-11 24020 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.24 121.14 108220000 23757000 25113000 0 0 0 0 12555000 15223000 12665000 0 0 0 0 0 8474400 0 0 0 4045900 0 6382600 0 0 0 12543 1936 12223 235665;235666;235667;235668;235669;235670;235671;235672 144391;144392 144391 2 LHRPYLAANLSR Unmodified 1409.7892 0.78916637 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 2 2 2 2 2 1 1 2 2 2 1 1 2 16.39 16.93 2;3 3.2028E-06 5071 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 132.5 117.82 186950000 0 0 2625800 0 0 0 14259000 11847000 13436000 7375100 3558100 7491800 10736000 10816000 7409000 10071000 9549400 9485900 19609000 17981000 21175000 1940500 2490800 5097200 12544 1781 12224 235673;235674;235675;235676;235677;235678;235679;235680;235681;235682;235683;235684;235685;235686;235687;235688;235689;235690;235691;235692;235693;235694;235695;235696;235697;235698;235699;235700;235701 144393;144394;144395;144396;144397;144398;144399;144400;144401;144402 144396 10 LHSFELAMDVK Unmodified 1288.6486 0.64855829 812 P0ADV5 yhbW Uncharacterized protein YhbW yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.926 29.569 3 7.6928E-05 13880 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 108.47 104.42 134790000 14729000 15088000 10374000 0 0 0 16155000 13301000 13615000 0 0 0 6847700 7513900 5516600 0 0 0 11115000 9163000 11370000 0 0 0 12545 812 12225 235702;235703;235704;235705;235706;235707;235708;235709;235710;235711;235712;235713 144403;144404;144405;144406;144407;144408;144409;144410;144411;144412;144413 144409 10 LHSLLDEGSLVELGSELEPK Unmodified 2164.1263 0.12632931 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 2 2 1 52.103 50.909 2;3 3.0877E-111 25049 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 463 458 3227400000 222160000 229930000 232530000 6637800 5625300 5240800 230830000 245130000 254000000 27241000 26527000 22489000 239880000 213100000 245290000 11039000 17156000 16249000 289390000 299850000 276280000 37762000 37919000 35087000 12546 547 12226 235714;235715;235716;235717;235718;235719;235720;235721;235722;235723;235724;235725;235726;235727;235728;235729;235730;235731;235732;235733;235734;235735;235736;235737;235738;235739;235740;235741;235742;235743;235744;235745;235746;235747;235748;235749;235750;235751;235752 144414;144415;144416;144417;144418;144419;144420;144421;144422;144423;144424;144425;144426;144427;144428;144429;144430;144431;144432;144433;144434;144435;144436;144437;144438;144439;144440;144441;144442;144443;144444;144445;144446;144447;144448;144449 144425 36 LHSQLNYSSLR Unmodified 1316.6837 0.68369824 1165 P20099 bisC Biotin sulfoxide reductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.724 18.35 3 0.00033066 6735 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 85.813 78.909 88062000 0 6936600 6187600 0 0 0 12453000 12723000 11654000 0 0 0 4801200 4859800 5691700 0 0 0 7866200 8311900 5654300 922640 0 0 12547 1165 12227 235753;235754;235755;235756;235757;235758;235759;235760;235761;235762;235763;235764 144450;144451;144452;144453;144454 144453 5 LHTTFWPEEYPEIR Unmodified 1816.8784 0.87843489 472 P0A8Y3 yihX Alpha-D-glucose-1-phosphate phosphatase YihX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 1 2 2 2 1 1 2 39.541 37.82 2;3 2.8696E-26 18449 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 226.71 199.23 959750000 113430000 108100000 88354000 316210 347700 0 103380000 92586000 88427000 1561600 0 1293500 56745000 50586000 48223000 963530 0 0 69441000 65863000 63775000 1675300 2196000 2489600 12548 472 12228 235765;235766;235767;235768;235769;235770;235771;235772;235773;235774;235775;235776;235777;235778;235779;235780;235781;235782;235783;235784;235785;235786;235787;235788;235789;235790;235791;235792;235793;235794;235795;235796;235797 144455;144456;144457;144458;144459;144460;144461;144462;144463;144464;144465;144466;144467;144468;144469;144470;144471;144472;144473;144474;144475;144476;144477 144461 23 LHTVLER Unmodified 866.4974 0.49740102 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.97 13.649 2 0.00047536 4038 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 153.15 90.17 520410000 36575000 40202000 37828000 0 2140000 1637600 53913000 54322000 49135000 4107400 2294100 2680200 29956000 30461000 30253000 0 0 0 48724000 43847000 45080000 1522300 2635100 3094800 12549 245 12229 235798;235799;235800;235801;235802;235803;235804;235805;235806;235807;235808;235809;235810;235811;235812;235813;235814;235815;235816;235817 144478;144479;144480;144481;144482;144483;144484;144485;144486 144482 8 LHVCGNNPTCDGYEIEEGEFR Unmodified 2495.0482 0.048172119 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 31.126 29.75 2;3 1.2775E-34 14227 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 206.64 206.64 1024300000 81431000 65104000 54456000 1221100 0 1246200 75897000 83114000 72543000 8009600 5636000 5270000 81270000 81713000 72796000 8496400 7692600 7776100 100650000 89603000 92443000 8367100 9256900 10275000 12550 124 12230 235818;235819;235820;235821;235822;235823;235824;235825;235826;235827;235828;235829;235830;235831;235832;235833;235834;235835;235836;235837;235838;235839;235840;235841;235842;235843;235844;235845;235846;235847;235848;235849;235850;235851;235852 144487;144488;144489;144490;144491;144492;144493;144494;144495;144496;144497;144498;144499;144500;144501;144502;144503;144504;144505;144506;144507;144508;144509;144510 144495 24 LHVDEAMMDEIK Unmodified 1429.6581 0.6581367 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 1 2 2 2 1 31.029 29.525 2;3 1.7571E-10 13359 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 130.01 126.31 635780000 50313000 43254000 41582000 7615900 7296100 7886100 39077000 32193000 33677000 31383000 37367000 31845000 21185000 17944000 32294000 4231000 3993500 4110000 47822000 33489000 58182000 16876000 19349000 12814000 12551 1009 12231 235853;235854;235855;235856;235857;235858;235859;235860;235861;235862;235863;235864;235865;235866;235867;235868;235869;235870;235871;235872;235873;235874;235875;235876;235877;235878;235879;235880;235881;235882;235883;235884;235885;235886;235887;235888;235889;235890;235891;235892;235893;235894;235895 144511;144512;144513;144514;144515;144516;144517;144518;144519;144520;144521;144522;144523;144524;144525;144526;144527;144528;144529;144530;144531;144532;144533;144534;144535;144536 144533 24 LHVHDENNECGIGDVVEIR Unmodified 2204.028 0.028029025 989 P0AG63 rpsQ 30S ribosomal protein S17 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 26.565 25.459 2;3;4 1.9687E-55 11354 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 318.18 318.18 8696700000 1177100000 1236600000 590790000 33777000 34921000 34952000 374480000 354490000 367720000 123680000 87660000 92577000 517930000 481810000 450050000 62079000 49910000 53648000 806570000 810960000 776160000 54312000 62414000 62111000 12552 989 12232 235896;235897;235898;235899;235900;235901;235902;235903;235904;235905;235906;235907;235908;235909;235910;235911;235912;235913;235914;235915;235916;235917;235918;235919;235920;235921;235922;235923;235924;235925;235926;235927;235928;235929;235930;235931;235932;235933;235934;235935;235936;235937;235938;235939;235940;235941;235942;235943;235944;235945;235946;235947;235948;235949;235950;235951;235952;235953;235954;235955;235956;235957;235958;235959;235960;235961;235962;235963;235964 144537;144538;144539;144540;144541;144542;144543;144544;144545;144546;144547;144548;144549;144550;144551;144552;144553;144554;144555;144556;144557;144558;144559;144560;144561;144562;144563;144564;144565;144566;144567;144568;144569;144570;144571;144572;144573;144574;144575;144576;144577;144578;144579;144580;144581;144582;144583;144584;144585;144586;144587;144588;144589;144590;144591 144582 54 LHVLLRPEDLR Unmodified 1359.7987 0.79866842 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.806 24.544 3 0.001099 8657 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 72.2 67.634 167270000 7030300 7528900 8124100 2437500 2234600 2431500 14891000 9550400 13548000 8613000 5221900 4853300 13916000 0 0 0 0 0 17767000 15261000 17676000 5584200 5076600 5521700 12553 1754 12233 235965;235966;235967;235968;235969;235970;235971;235972;235973;235974;235975;235976;235977;235978;235979;235980;235981;235982;235983 144592;144593;144594;144595;144596;144597;144598 144594 6 LHVPLICITGRPESSMAR Unmodified 2036.0659 0.065934856 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 32.462 31.127 3;4 8.8733E-10 14173 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 120.66 116.14 728380000 75171000 67867000 61726000 0 0 0 0 65436000 60158000 0 1155900 0 59925000 55164000 57775000 0 0 0 71712000 73013000 79281000 0 0 0 12554 1565 12234 235984;235985;235986;235987;235988;235989;235990;235991;235992;235993;235994;235995;235996;235997;235998;235999;236000;236001;236002;236003;236004;236005;236006 144599;144600;144601;144602;144603;144604;144605;144606;144607;144608;144609;144610;144611;144612;144613;144614;144615;144616;144617;144618 144614 19 LHYALVDEVDSILIDEAR Unmodified 2070.0633 0.063335123 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.007 52.763 3 1.9739E-22 21262 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 182.35 172.56 934350000 31866000 31651000 19290000 5320600 4748700 5861200 42384000 36944000 29760000 52298000 38138000 27571000 37367000 32485000 32974000 55200000 131380000 105350000 46742000 49933000 41474000 25424000 26040000 24149000 12555 1057 12235 236007;236008;236009;236010;236011;236012;236013;236014;236015;236016;236017;236018;236019;236020;236021;236022;236023;236024;236025;236026;236027;236028;236029;236030 144619;144620;144621;144622;144623;144624;144625;144626;144627;144628;144629;144630;144631;144632;144633 144622 15 LHYHGDLEAAK Unmodified 1252.62 0.62003536 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 3 2 3 12.664 12.657 2;3 3.6434E-06 2867 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 154.01 154.01 366200000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 147810000 119400000 98998000 0 0 0 0 0 0 12556 1004 12236 236031;236032;236033;236034;236035;236036;236037;236038 144634;144635;144636;144637;144638;144639 144635 6 LHYLLSQELDTETIR Unmodified 1829.9523 0.95232811 492 P0A962 ansA L-asparaginase 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.549 34.984 3 0.0092728 17238 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 46.319 42.003 296360000 26642000 18817000 20431000 0 0 0 22682000 17348000 19594000 0 0 0 25954000 26680000 20963000 0 0 0 27613000 36126000 33508000 0 0 0 12557 492 12237 236039;236040;236041;236042;236043;236044;236045;236046;236047;236048;236049;236050 144640 144640 1 LHYVYPYPHVDDVIPLMAEGK Unmodified 2455.2246 0.22460357 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 2 2 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 1 1 2 45.176 43.699 3;4 4.6638E-16 21341 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 155.01 151.21 639660000 59907000 63591000 31554000 4469600 5441900 4567400 37016000 35239000 36360000 9099300 4120000 5018200 32204000 39131000 42437000 3357500 3271600 2995100 77165000 70063000 61535000 3204600 3367400 4547700 12558 863 12238 236051;236052;236053;236054;236055;236056;236057;236058;236059;236060;236061;236062;236063;236064;236065;236066;236067;236068;236069;236070;236071;236072;236073;236074;236075;236076;236077;236078;236079;236080;236081;236082;236083;236084;236085;236086;236087;236088;236089;236090;236091 144641;144642;144643;144644;144645;144646;144647;144648;144649;144650;144651;144652;144653;144654;144655;144656;144657;144658;144659 144649 19 LHYWSLDDEQAAIK Unmodified 1687.8206 0.82058566 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 33.967 32.519 2;3 1.8735E-26 15531 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 234.3 214.54 1014900000 113670000 103000000 85722000 0 0 0 75037000 81016000 74502000 0 0 0 69470000 63398000 73631000 0 0 0 86230000 98942000 90302000 0 0 0 12559 1085 12239 236092;236093;236094;236095;236096;236097;236098;236099;236100;236101;236102;236103;236104;236105;236106;236107;236108;236109;236110;236111;236112;236113;236114;236115 144660;144661;144662;144663;144664;144665;144666;144667;144668;144669;144670;144671;144672;144673;144674;144675 144669 16 LIAAAEACIAELNLNAVR Unmodified 1911.0248 0.024781548 903 P0AF12 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.133 48.726 2;3 9.736E-10 23971 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119 116.93 1526900000 131850000 117620000 110180000 0 0 0 146160000 144990000 136180000 0 0 0 117630000 108230000 126390000 0 0 0 131360000 131010000 125250000 0 0 0 12560 903 12240 236116;236117;236118;236119;236120;236121;236122;236123;236124;236125;236126;236127;236128;236129;236130;236131;236132;236133;236134;236135;236136;236137;236138;236139 144676;144677;144678;144679;144680;144681;144682;144683;144684;144685;144686;144687;144688 144683 10 LIAAAPTAVAPEESGFYAR Unmodified 1932.9945 0.99452728 123 P06610 btuE Vitamin B12 transport periplasmic protein BtuE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 39.366 37.687 2;3 8.7485E-18 18577 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 220.69 190.89 2124500000 367060000 326420000 301190000 1341900 1772100 1498500 182030000 161260000 148090000 0 0 0 81520000 81338000 81606000 0 0 0 121990000 133520000 133870000 0 0 0 12561 123 12241 236140;236141;236142;236143;236144;236145;236146;236147;236148;236149;236150;236151;236152;236153;236154;236155;236156;236157;236158;236159;236160;236161;236162;236163;236164;236165;236166 144689;144690;144691;144692;144693;144694;144695;144696;144697;144698;144699;144700;144701;144702;144703;144704 144693 16 LIAAENPAKPLSDSK Unmodified 1552.8461 0.84607213 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 2 18.519 18.914 2;3 8.1176E-15 5481 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 190.34 171.71 343370000 23467000 14675000 23830000 1595300 2137100 1918800 8994300 10117000 7615100 0 1301100 947120 6952700 5445000 0 79820000 59931000 54889000 11247000 14663000 13829000 0 0 0 12562 1249 12242 236167;236168;236169;236170;236171;236172;236173;236174;236175;236176;236177;236178;236179;236180;236181;236182;236183;236184;236185;236186;236187;236188;236189;236190;236191 144705;144706;144707;144708;144709;144710 144705 6 LIAAPMAGITDR Unmodified 1227.6645 0.66454271 678 P0ABT5 dusB tRNA-dihydrouridine synthase B yes yes 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 34.282 32.903 2 0.0013918 15573 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.299 58.078 12925000 0 3871000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2732600 3619400 2701700 0 0 0 12563 678 12243 236192;236193;236194;236195 144711;144712 144712 0 LIADQLR Unmodified 827.4865 0.48650199 1362 P31131 ydeJ Protein YdeJ yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 20.646 21.146 2 0.096315 8395 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 54.571 9.5977 38615000 20485000 15125000 0 0 0 0 0 0 0 0 0 0 0 3004500 0 0 0 0 0 0 0 0 0 0 12564 1362 12244 236196;236197;236198 144713;144714 144713 2 LIADVVCFPGCHINHLTPR Unmodified 2218.1139 0.11394768 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 35.858 34.337 3;4 3.5167E-10 16553 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126 122.61 220050000 59194000 72813000 49071000 0 0 0 10575000 7464900 11407000 0 0 0 6033200 0 3488500 0 0 0 0 0 0 0 0 0 12565 1814 12245 236199;236200;236201;236202;236203;236204;236205;236206;236207;236208;236209 144715;144716;144717;144718;144719;144720 144716 6 LIADYELSALLVTR Unmodified 1575.8872 0.88720866 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.125 52.71 2 5.9256E-08 24812 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 141.73 135.75 123770000 9331900 10966000 7154800 872690 0 0 0 13732000 16653000 0 0 0 11544000 10012000 7691500 0 0 0 13660000 11394000 10755000 0 0 0 12566 1880 12246 236210;236211;236212;236213;236214;236215;236216;236217;236218;236219;236220;236221 144721;144722;144723;144724;144725;144726;144727 144726 4 LIAEAMDK Unmodified 889.4579 0.45790397 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.715 18.152 2 0.0026172 6655 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 98.997 86.612 9203100000 978290000 950320000 764690000 47060000 44374000 47018000 0 0 0 43310000 39514000 41377000 1099900000 856810000 836490000 7679600 10726000 11448000 1092500000 1122000000 1101400000 33842000 37900000 36489000 12567 240 12247 236222;236223;236224;236225;236226;236227;236228;236229;236230;236231;236232;236233;236234;236235;236236;236237;236238;236239;236240;236241;236242 144728;144729;144730;144731;144732;144733;144734;144735;144736;144737;144738;144739;144740;144741;144742;144743;144744;144745;144746;144747 144737 19 LIAEAMDK Oxidation (M) 905.45282 0.4528186 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 12.251 13.055 2 0.038788 3848 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.596 46.064 37551000 0 0 0 0 0 0 0 0 37551000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12568 240 12247 236243;236244;236245;236246 144748;144749;144750;144751 144751 101 4 LIAEAMDKVGK Unmodified 1173.6427 0.64274463 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 20.074 20.106 3 0.0010006 5829 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 62.408 47.02 54515000 0 0 0 10152000 11846000 10023000 0 0 0 3304200 3450300 2541100 0 0 0 0 0 0 0 0 0 4309200 4747700 4142300 12569 240 12248 236247;236248;236249;236250;236251;236252;236253;236254;236255 144752;144753;144754;144755;144756;144757 144755 6 LIAETAPDANNLLR Unmodified 1509.8151 0.81510635 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.136 33.694 2 1.0116E-06 16541 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 162.64 135.59 259390000 7928500 7458400 6369200 4212000 4095400 3610600 20133000 20116000 17199000 0 9909600 8882800 15496000 15927000 14854000 3460700 1784600 1545000 25240000 24800000 22936000 9195300 6286000 7952000 12570 975 12249 236256;236257;236258;236259;236260;236261;236262;236263;236264;236265;236266;236267;236268;236269;236270;236271;236272;236273;236274;236275;236276;236277;236278 144758;144759;144760;144761;144762;144763;144764;144765;144766;144767;144768;144769;144770;144771;144772;144773;144774 144760 16 LIAFYDDNGISIDGHVEGWFTDDTAMR Unmodified 3057.3815 0.38145115 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.311 52.863 3 1.4848E-16 25010 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 154.24 153.49 201510000 7365600 8441800 9656400 0 0 0 18146000 13078000 16284000 0 0 0 17384000 19748000 15599000 0 0 0 28396000 25497000 21918000 0 0 0 12571 1299 12250 236279;236280;236281;236282;236283;236284;236285;236286;236287;236288;236289;236290 144775 144775 1 LIAGESDGLPGITIDR Unmodified 1625.8625 0.86245047 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.264 40.823 2 5.0079E-10 19865 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 179.35 173.12 364690000 23570000 26313000 24463000 0 0 0 35602000 30578000 30129000 0 0 0 27534000 23324000 22980000 8594200 0 5230600 34304000 38306000 33763000 0 0 0 12572 1787 12251 236291;236292;236293;236294;236295;236296;236297;236298;236299;236300;236301;236302;236303;236304;236305 144776;144777;144778;144779;144780;144781;144782;144783;144784;144785;144786;144787;144788;144789 144782 14 LIAGILPDLLVK Unmodified 1263.8166 0.8166099 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.636 53.202 2 2.5224E-05 25293 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 118.71 118.71 1178200000 98577000 78835000 79126000 4048700 4779200 4317800 76801000 93440000 72204000 20413000 18071000 19999000 96037000 92406000 87656000 0 0 0 100160000 106680000 111670000 6301800 3609300 3050000 12573 1880 12252 236306;236307;236308;236309;236310;236311;236312;236313;236314;236315;236316;236317;236318;236319;236320;236321;236322;236323;236324;236325;236326 144790;144791;144792;144793;144794;144795;144796;144797;144798;144799;144800;144801;144802;144803;144804 144802 15 LIAGLETVDSGR Unmodified 1229.6616 0.66156582 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 1 2 1 1 1 1 1 1 1 2 1 30.739 29.221 2 3.57E-08 10883 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 161.63 146.37 392610000 15680000 10733000 8929800 5081100 5164000 4624900 31737000 12286000 28128000 16685000 15090000 13126000 33388000 26331000 34153000 3702600 2319800 3128700 29202000 29635000 29265000 10416000 15768000 8033400 12574 1754 12253 236327;236328;236329;236330;236331;236332;236333;236334;236335;236336;236337;236338;236339;236340;236341;236342;236343;236344;236345;236346;236347;236348;236349;236350;236351;236352;236353;236354;236355;236356;236357;236358;236359 144805;144806;144807;144808;144809;144810;144811;144812;144813;144814;144815;144816;144817;144818;144819;144820;144821;144822;144823 144811 18 LIAGPSVYICDECVDLCNDIIR Unmodified 2594.2179 0.21787998 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.812 51.462 2;3 1.6853E-52 25124 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 248.68 246.32 799770000 86707000 68297000 53316000 0 0 0 58931000 49237000 55304000 0 0 0 76787000 63026000 69521000 0 0 0 68247000 72549000 77844000 0 0 0 12575 244 12254 236360;236361;236362;236363;236364;236365;236366;236367;236368;236369;236370;236371;236372;236373;236374;236375;236376;236377;236378;236379;236380;236381;236382;236383 144824;144825;144826;144827;144828;144829;144830;144831;144832;144833;144834;144835;144836;144837;144838;144839;144840;144841;144842;144843;144844 144828 21 LIAGPSVYICDECVDLCNDIIREEIK Unmodified 3093.4821 0.48209317 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52 50.702 3 6.4322E-16 25087 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.47 144.96 398860000 34871000 31569000 28384000 0 0 0 35651000 32879000 38121000 6507000 0 5341400 22779000 20006000 18776000 0 0 0 43577000 44405000 35989000 0 0 0 12576 244 12255 236384;236385;236386;236387;236388;236389;236390;236391;236392;236393;236394;236395;236396;236397 144845;144846;144847;144848;144849;144850;144851;144852;144853 144845 9 LIAHVGCVSTAESQQLAASAK Unmodified 2140.0947 0.094652027 259 P0A6L4 nanA N-acetylneuraminate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 2 1 1 25.104 24.197 2;3 9.1959E-28 10661 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.62 177.19 554540000 76129000 87440000 78187000 0 0 0 0 0 30393000 0 0 0 52517000 51070000 53067000 0 0 0 41707000 46132000 37898000 0 0 0 12577 259 12256 236398;236399;236400;236401;236402;236403;236404;236405;236406;236407;236408;236409;236410;236411;236412 144854;144855;144856;144857;144858;144859;144860;144861;144862;144863 144858 8 LIAIDMDGTLLLPDHTISPAVK Unmodified 2332.2712 0.27121941 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 51.709 50.459 2;3 1.2409E-15 24581 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 122.01 114.9 1341400000 102530000 104690000 98563000 0 0 0 119810000 112660000 109890000 0 0 0 123860000 119620000 108920000 0 0 0 117810000 106320000 116760000 0 0 0 12578 473 12257 236413;236414;236415;236416;236417;236418;236419;236420;236421;236422;236423;236424;236425;236426;236427;236428;236429;236430;236431;236432;236433;236434;236435 144864;144865;144866;144867;144868;144869;144870;144871;144872;144873;144874;144875;144876;144877 144867 14 LIAIGASTGGTEAIR Unmodified 1428.7936 0.79364262 159 P07330 cheB Chemotaxis response regulator protein-glutamate methylesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 30.716 29.371 2 0.00014106 13821 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.479 65.208 28054000 8500500 10074000 5862900 1154500 1222000 1240600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12579 159 12258 236436;236437;236438;236439;236440;236441 144878;144879;144880 144878 0 LIALLSQEGADFR Unmodified 1431.7722 0.7721789 1676 P64483 yeaK Uncharacterized protein YeaK yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.564 42.872 2 3.6999E-12 21201 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 222 193.27 335370000 28832000 28910000 23768000 1807100 0 1616000 40924000 36095000 34753000 3051300 3044000 3315800 20493000 18822000 16580000 0 0 0 26305000 23712000 22266000 0 0 1074100 12580 1676 12259 236442;236443;236444;236445;236446;236447;236448;236449;236450;236451;236452;236453;236454;236455;236456;236457;236458;236459;236460 144881;144882;144883;144884;144885;144886;144887;144888;144889;144890 144883 9 LIAMAENMPIDILR Unmodified 1598.8524 0.85241983 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 52.876 51.492 3 9.5088E-06 25135 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.591 84.676 35612000 6462100 4899700 7162000 0 0 0 0 0 2282400 0 0 0 2544200 2132900 3044500 0 0 0 0 3623400 3460900 0 0 0 12581 1632 12260 236461;236462;236463;236464;236465;236466;236467;236468;236469 144891 144891 1 LIANIADWLELHPAEK Unmodified 1831.9832 0.98323431 1134 P17109 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 50.452 49.074 3 1.4651E-06 24280 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 96.303 96.173 156570000 7614500 6732300 8638200 0 0 0 17605000 17007000 14526000 0 0 611610 13529000 11747000 12699000 0 0 0 16710000 14571000 14576000 0 0 0 12582 1134 12261 236470;236471;236472;236473;236474;236475;236476;236477;236478;236479;236480;236481;236482 144892;144893;144894;144895;144896;144897;144898;144899 144893 8 LIAPLPAQHQAFNQAWTTAVTATQ Unmodified 2577.334 0.3339711 791 P0ADK0 yiaF Uncharacterized protein YiaF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 2 2 2 1 2 2 2 2 2 1 1 2 2 1 2 2 49.827 48.455 2;3 3.7841E-06 23933 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 133.16 120.6 970170000 29412000 26287000 27664000 0 0 1228400 101140000 102230000 92733000 8667400 63198000 69772000 52475000 57141000 49813000 0 0 4943900 65856000 73396000 73178000 19077000 27104000 24852000 12583 791 12262 236483;236484;236485;236486;236487;236488;236489;236490;236491;236492;236493;236494;236495;236496;236497;236498;236499;236500;236501;236502;236503;236504;236505;236506;236507;236508;236509;236510;236511;236512;236513;236514;236515;236516 144900;144901;144902;144903;144904;144905;144906;144907;144908;144909;144910;144911;144912;144913;144914;144915;144916;144917;144918;144919;144920 144907 21 LIAQGLPNK Unmodified 952.57057 0.57056597 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.041 19.42 2 0.00022556 7331 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 124.34 120.41 2745800000 366910000 364310000 293300000 15056000 12641000 11149000 337110000 299270000 289020000 10560000 8256700 7758300 115880000 99882000 88452000 0 0 0 142020000 150580000 124350000 3134700 2944600 3245900 12584 908 12263 236517;236518;236519;236520;236521;236522;236523;236524;236525;236526;236527;236528;236529;236530;236531;236532;236533;236534;236535;236536;236537 144921;144922;144923;144924;144925;144926;144927;144928;144929;144930;144931;144932;144933;144934;144935;144936;144937;144938;144939;144940;144941 144936 21 LIAQNPVSYNFHVPLADGGVLLGASPELLLR Unmodified 3272.7921 0.79213307 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 54.782 53.385 3 4.1209E-09 26220 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 90.299 89.258 70113000 0 0 0 0 0 0 0 0 0 0 0 0 0 5514500 0 0 0 0 28057000 17588000 18954000 0 0 0 12585 865 12264 236538;236539;236540;236541 144942 144942 1 LIAYPIAVEALSLIYNK Unmodified 1890.0866 0.086636748 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 55.816 54.359 2;3 1.3E-14 27122 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.96 130.93 4972500000 51544000 76425000 72275000 1851100 1587700 1809400 125770000 84338000 153710000 0 0 0 898350000 859760000 841650000 0 0 0 386270000 707190000 703800000 2197200 3982800 0 12586 895 12265 236542;236543;236544;236545;236546;236547;236548;236549;236550;236551;236552;236553;236554;236555;236556;236557;236558;236559;236560;236561;236562;236563;236564;236565;236566;236567;236568;236569 144943;144944;144945;144946;144947;144948;144949;144950;144951;144952;144953;144954;144955;144956;144957;144958;144959;144960;144961;144962;144963 144944 21 LIAYVTGVQNVR Unmodified 1331.7561 0.75613491 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 31.794 30.43 2 3.9816E-12 13634 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 196.99 165.92 992940000 127490000 0 124430000 0 0 0 80116000 78271000 88146000 0 0 0 63735000 58310000 59591000 0 0 0 107320000 103700000 101830000 0 0 0 12587 444 12266 236570;236571;236572;236573;236574;236575;236576;236577;236578;236579;236580 144964;144965;144966;144967;144968;144969;144970;144971 144971 3 LICIDPMR Unmodified 1016.5147 0.51470735 1165 P20099 bisC Biotin sulfoxide reductase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 33.615 32.213 2 0.015552 15276 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.998 59.364 65379000 10682000 7845600 6514700 0 0 0 6698300 0 5746100 0 0 0 2926700 4067600 3350100 0 0 0 5462100 6882200 5203200 0 0 0 12588 1165 12267 236581;236582;236583;236584;236585;236586;236587;236588;236589;236590;236591 144972;144973 144973 2 LICYGENR Unmodified 1023.4808 0.48076468 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.756 16.572 2 0.00036652 5401 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 143.23 127.07 3090200000 218560000 224120000 218120000 0 0 0 289430000 275900000 259350000 0 0 0 216220000 212570000 220760000 0 0 0 336980000 325610000 292610000 0 0 0 12589 1236 12268 236592;236593;236594;236595;236596;236597;236598;236599;236600;236601;236602;236603 144974;144975;144976;144977;144978;144979;144980;144981;144982;144983;144984;144985 144983 12 LIDALSQLPAGYPVYSNR Unmodified 1976.0367 0.036726442 1134 P17109 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 48.292 47.067 2 5.4806E-17 22908 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 160.69 151.96 43498000 3316600 3747700 4713200 0 0 0 0 0 0 0 0 0 5252200 6263900 2957200 0 0 0 7067900 6016400 4162600 0 0 0 12590 1134 12269 236604;236605;236606;236607;236608;236609;236610;236611;236612 144986 144986 1 LIDATFADR Unmodified 1020.524 0.52400971 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 27.382 26.318 2 0.00063648 12065 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.14 88.933 968250000 324890000 310960000 299430000 0 0 0 0 0 4044400 0 0 0 0 0 4805200 0 0 0 8106200 8622100 7387500 0 0 0 12591 1919 12270 236613;236614;236615;236616;236617;236618;236619;236620 144987 144987 1 LIDDAVAWAK Unmodified 1100.5866 0.58660996 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.442 33.781 2 0.00043055 16502 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.56 97.904 9337500000 705200000 612280000 559080000 2226700 2340300 1897000 947670000 913440000 800200000 0 0 2430300 736050000 762920000 750390000 0 0 0 839320000 875950000 824070000 884490 1179300 0 12592 402 12271 236621;236622;236623;236624;236625;236626;236627;236628;236629;236630;236631;236632;236633;236634;236635;236636;236637;236638 144988;144989;144990;144991;144992;144993;144994;144995;144996;144997;144998;144999;145000;145001;145002 144989 15 LIDDIVK Unmodified 814.48002 0.48001963 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.494 25.077 2 0.0060552 8858 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 97.071 32.295 73638000 0 0 5056100 2428600 1917700 2509700 10484000 11095000 10997000 5676900 5926700 4891000 4422800 0 0 0 0 0 0 0 0 2281100 3207100 2745100 12593 1300 12272 236639;236640;236641;236642;236643;236644;236645;236646;236647;236648;236649;236650;236651;236652 145003;145004;145005;145006;145007;145008;145009 145006 7 LIDEAIDEAAR Unmodified 1214.6143 0.61428128 332 P0A7D1 pth Peptidyl-tRNA hydrolase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 28.118 26.981 2 3.1389E-06 11907 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 154.56 112.45 318700000 44632000 0 44072000 0 1086300 510610 0 0 0 0 0 0 34672000 32657000 34900000 0 0 0 42780000 44343000 39047000 0 0 0 12594 332 12273 236653;236654;236655;236656;236657;236658;236659;236660;236661;236662 145010;145011;145012;145013;145014;145015;145016;145017 145016 8 LIDEALLDQYAR Unmodified 1418.7405 0.74054442 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 43.406 41.899 2;3 2.3493E-23 20386 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 236.56 223.98 753060000 26429000 26969000 23921000 8576200 9174400 8546800 61429000 54995000 47378000 32908000 33551000 28135000 44991000 44303000 44805000 8066000 5192100 5056200 67780000 57680000 59457000 18083000 19843000 15795000 12595 819 12274 236663;236664;236665;236666;236667;236668;236669;236670;236671;236672;236673;236674;236675;236676;236677;236678;236679;236680;236681;236682;236683;236684;236685;236686;236687 145018;145019;145020;145021;145022;145023;145024;145025;145026;145027;145028;145029;145030;145031;145032;145033;145034;145035 145025 16 LIDEFGR Unmodified 848.43922 0.43921744 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 2 3 6 5 1 1 1 9 10 12 1 1 2 4 5 6 26.675 25.844 2 4.3391E-05 8490 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 178.02 141.43 43507000000 406540000 386420000 354650000 25154000 26513000 25071000 346140000 358360000 332600000 3336500000 3028700000 2824700000 288650000 270990000 297210000 5976900000 6110100000 6185100000 445500000 445180000 456200000 3992000000 3741500000 3846600000 12596 458 12275 236688;236689;236690;236691;236692;236693;236694;236695;236696;236697;236698;236699;236700;236701;236702;236703;236704;236705;236706;236707;236708;236709;236710;236711;236712;236713;236714;236715;236716;236717;236718;236719;236720;236721;236722;236723;236724;236725;236726;236727;236728;236729;236730;236731;236732;236733;236734;236735;236736;236737;236738;236739;236740;236741;236742;236743;236744;236745;236746;236747;236748;236749;236750;236751;236752;236753;236754;236755;236756;236757;236758;236759;236760;236761;236762;236763;236764;236765;236766 145036;145037;145038;145039;145040;145041;145042;145043;145044;145045;145046;145047;145048;145049;145050;145051;145052;145053;145054;145055;145056;145057;145058;145059;145060;145061;145062;145063;145064;145065;145066;145067;145068;145069;145070;145071;145072;145073;145074;145075;145076;145077;145078;145079;145080;145081;145082;145083;145084;145085;145086;145087;145088;145089;145090;145091;145092;145093;145094;145095;145096;145097;145098;145099;145100;145101;145102;145103;145104;145105;145106;145107;145108;145109;145110;145111;145112;145113;145114;145115;145116 145088 80 LIDETGVTPVINQIELHPLMQQR Unmodified 2643.4054 0.40542148 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 2 1 49.487 48.089 2;3 6.0638E-36 23733 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 268.59 263.87 2188400000 384060000 384610000 337780000 0 0 0 248940000 256110000 232250000 0 0 0 60065000 53914000 55253000 0 0 0 62865000 65177000 47397000 0 0 0 12597 1960 12276 236767;236768;236769;236770;236771;236772;236773;236774;236775;236776;236777;236778;236779;236780;236781;236782;236783;236784;236785 145117;145118;145119;145120;145121;145122;145123;145124;145125;145126;145127;145128;145129;145130;145131;145132;145133 145121 17 LIDFNGGTLR Unmodified 1104.5928 0.59275797 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 33.626 31.984 2 4.9311E-19 15226 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 195.27 161.47 1770400000 0 181670000 167500000 1555000 1555100 1608200 216120000 209390000 206520000 2179900 1871500 1784100 99762000 100600000 102610000 0 0 0 160730000 162320000 151750000 0 0 924210 12598 1109 12277 236786;236787;236788;236789;236790;236791;236792;236793;236794;236795;236796;236797;236798;236799;236800;236801;236802;236803;236804;236805 145134;145135;145136;145137;145138;145139;145140;145141;145142;145143;145144;145145 145140 12 LIDGTVFDSSVAR Unmodified 1378.7092 0.70924429 533 P0A9L3 fklB FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 1 2 3 3 2 3 3 3 1 1 1 3 3 3 1 1 1 36.845 35.319 2;3 2.1122E-12 16106 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 190.86 164.34 5449300000 383870000 385440000 313680000 10014000 8858200 9176800 450020000 438250000 422980000 0 0 0 428830000 429040000 440100000 5268000 3920400 4245800 564070000 547530000 583070000 5911300 6944600 8096400 12599 533 12278 236806;236807;236808;236809;236810;236811;236812;236813;236814;236815;236816;236817;236818;236819;236820;236821;236822;236823;236824;236825;236826;236827;236828;236829;236830;236831;236832;236833;236834;236835;236836;236837;236838;236839;236840;236841;236842;236843;236844;236845;236846;236847;236848 145146;145147;145148;145149;145150;145151;145152;145153;145154;145155;145156;145157;145158;145159;145160;145161;145162;145163;145164;145165;145166 145165 19 LIDKTEHPGPLPETVVAHLDK Unmodified 2308.2427 0.24269647 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 27.309 26.238 3;4 3.9796E-15 11780 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.64 136.34 847900000 206900000 193230000 160510000 0 0 0 6920700 7076300 6121300 0 0 0 38572000 40366000 40889000 0 0 0 15094000 70217000 62004000 0 0 0 12600 340 12279 236849;236850;236851;236852;236853;236854;236855;236856;236857;236858;236859;236860;236861;236862;236863;236864;236865;236866;236867;236868 145167;145168;145169;145170;145171;145172;145173;145174 145173 8 LIDLGSDEVATAGK Unmodified 1387.7195 0.71947463 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 31.725 30.297 2 5.1374E-06 10328 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 112.13 107.83 90615000 9800600 0 0 27951000 26592000 26272000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12601 114 12280 236869;236870;236871;236872 145175 145175 1 LIDMGEEIGLATVYR Unmodified 1678.86 0.86000763 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 1 50.633 49.287 2;3 2.5861E-09 23996 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.15 152.64 1132500000 85627000 84937000 64614000 10760000 10052000 9569600 98384000 85172000 76410000 11129000 9354400 12952000 94980000 85280000 82383000 0 1287200 0 99563000 98600000 92111000 6820900 8107400 4388900 12602 503 12281 236873;236874;236875;236876;236877;236878;236879;236880;236881;236882;236883;236884;236885;236886;236887;236888;236889;236890;236891;236892;236893;236894;236895;236896;236897;236898;236899;236900;236901;236902;236903;236904;236905;236906;236907;236908;236909;236910;236911;236912;236913 145176;145177;145178;145179;145180;145181;145182;145183;145184;145185;145186;145187;145188;145189;145190;145191;145192;145193;145194;145195;145196;145197;145198;145199;145200;145201;145202;145203;145204 145198 14 LIDMLEDCDDVQEVYHNGEISDEVAATL Unmodified 3192.4115 0.41149023 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.54 53.108 3 0.14897 25277 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 19.926 19.921 301900000 0 26464000 19219000 0 0 0 0 17797000 20715000 0 0 0 37933000 33303000 27284000 0 0 0 43313000 41060000 34817000 0 0 0 12603 412 12282 236914;236915;236916;236917;236918;236919;236920;236921;236922;236923 145205 145205 1 LIDQATAEIVETAK Unmodified 1500.8035 0.80353861 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 1 1 1 2 3 3 2 1 1 1 1 1 2 2 3 2 2 2 35.087 33.486 2;3 2.0417E-14 16139 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 188.06 181.87 9575900000 1351800000 1362600000 1166300000 32528000 30115000 29997000 399320000 404950000 384740000 132460000 110450000 118310000 554920000 412920000 415420000 27884000 12889000 15564000 797540000 834380000 767450000 76387000 68331000 68604000 12604 365 12283 236924;236925;236926;236927;236928;236929;236930;236931;236932;236933;236934;236935;236936;236937;236938;236939;236940;236941;236942;236943;236944;236945;236946;236947;236948;236949;236950;236951;236952;236953;236954;236955;236956;236957;236958;236959;236960;236961;236962;236963;236964;236965;236966;236967;236968;236969 145206;145207;145208;145209;145210;145211;145212;145213;145214;145215;145216;145217;145218;145219;145220;145221;145222;145223;145224;145225;145226;145227;145228;145229;145230;145231;145232;145233;145234;145235;145236;145237;145238;145239;145240;145241;145242;145243;145244;145245;145246 145216 40 LIDQATAEIVETAKR Unmodified 1656.9046 0.90464964 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 1 1 1 1 1 1 2 2 2 30.433 28.866 2;3 4.6039E-20 11008 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 238.01 220.64 904420000 0 0 6115300 57559000 52263000 52263000 0 0 0 144720000 145000000 138050000 1893000 0 0 4021900 1966400 1608900 2189500 3072500 2505000 104360000 102040000 84784000 12605 365 12284 236970;236971;236972;236973;236974;236975;236976;236977;236978;236979;236980;236981;236982;236983;236984;236985;236986;236987;236988;236989;236990;236991;236992;236993;236994;236995 145247;145248;145249;145250;145251;145252;145253;145254;145255;145256;145257;145258;145259;145260;145261;145262;145263;145264 145250 17 LIDQVEGALYEVK Unmodified 1475.7872 0.78716026 605 P0AAN9 iraP Anti-adapter protein IraP yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 41.009 39.056 2 0.00049639 19459 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.09 64.064 55515000 0 0 0 0 0 0 10775000 9646400 10099000 0 0 2193700 0 0 0 0 0 0 8034300 8481300 6284800 0 0 0 12606 605 12285 236996;236997;236998;236999;237000;237001;237002 145265;145266 145265 1 LIDQVEGALYEVKPDASIPDDDTELLR Unmodified 3013.5132 0.51317683 605 P0AAN9 iraP Anti-adapter protein IraP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 50.542 49.231 3;4 3.2055E-41 24193 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 214.91 209.7 1983300000 241470000 228050000 219150000 2710400 4996300 0 141110000 149910000 165120000 15434000 11657000 10517000 137170000 141250000 107370000 3982800 3618500 3963000 119990000 137050000 129290000 4439400 0 5061200 12607 605 12286 237003;237004;237005;237006;237007;237008;237009;237010;237011;237012;237013;237014;237015;237016;237017;237018;237019;237020;237021;237022;237023;237024;237025;237026;237027;237028;237029;237030;237031;237032;237033;237034;237035;237036;237037;237038 145267;145268;145269;145270;145271;145272;145273;145274;145275;145276;145277;145278;145279;145280;145281;145282;145283;145284;145285;145286;145287;145288 145274 22 LIDSIIPEPLGGAHR Unmodified 1586.878 0.87804096 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 3 2 1 1 1 2 2 1 1 1 2 2 2 2 2 2 39.462 37.748 2;3 1.5971E-17 18334 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.54 117.6 2458200000 237000000 222750000 204520000 2847200 0 3020300 249930000 224040000 202140000 14740000 10385000 9999100 32688000 28717000 226210000 6171500 4115400 4143900 47253000 335980000 333490000 18163000 19404000 20496000 12608 651 12287 237039;237040;237041;237042;237043;237044;237045;237046;237047;237048;237049;237050;237051;237052;237053;237054;237055;237056;237057;237058;237059;237060;237061;237062;237063;237064;237065;237066;237067;237068;237069;237070;237071;237072;237073;237074;237075;237076;237077 145289;145290;145291;145292;145293;145294;145295;145296;145297;145298;145299;145300;145301;145302;145303;145304;145305;145306;145307;145308;145309;145310 145301 21 LIDSIIPEPLGGAHRNPEAMAASLK Unmodified 2599.3792 0.37920673 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 1 1 40.168 38.518 3;4 9.4215E-07 15089 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 97.5 90.851 115050000 0 0 0 6692200 6713600 6134500 0 0 0 0 10386000 11428000 0 0 0 0 4581000 6693300 0 0 0 23087000 16358000 22975000 12609 651 12288 237078;237079;237080;237081;237082;237083;237084;237085;237086;237087;237088;237089;237090;237091 145311;145312;145313;145314;145315;145316;145317;145318;145319 145313 8 LIDSQDVETR Unmodified 1174.583 0.58298115 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.188 17.765 2 3.8693E-12 6346 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 204.36 172.41 6494800000 294920000 329390000 262410000 0 4303000 0 646990000 610860000 575670000 0 0 0 566180000 517950000 496710000 0 2155800 0 745610000 728640000 702290000 3311600 3693300 3728900 12610 337 12289 237092;237093;237094;237095;237096;237097;237098;237099;237100;237101;237102;237103;237104;237105;237106;237107;237108 145320;145321;145322;145323;145324;145325;145326;145327;145328;145329;145330;145331 145328 8 LIDTPVR Unmodified 812.4756 0.47560295 1149 P18196 minC Septum site-determining protein MinC yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.211 18.745 2 0.0022409 7009 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 115.78 51.255 244930000 21371000 29054000 32216000 1895800 1991900 2193500 0 29892000 23104000 818280 0 0 0 0 26010000 0 0 0 23249000 26641000 26492000 0 0 0 12611 1149 12290 237109;237110;237111;237112;237113;237114;237115;237116;237117;237118;237119;237120;237121;237122;237123 145332;145333;145334;145335;145336;145337;145338 145333 6 LIDVHCDEIDDEQSR Unmodified 1842.8054 0.80540588 1257 P25524 codA Cytosine deaminase yes yes 0 0 0 By MS/MS By matching 1 1 23.267 22.787 2 3.5866E-06 9803 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.17 106.87 11996000 0 7448300 4547200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12612 1257 12291 237124;237125 145339 145339 1 LIDWCQSR Unmodified 1076.5073 0.50731378 1180 P21369 pncA Pyrazinamidase/nicotinamidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.548 25.501 2 0.00048964 11450 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 136.11 123.07 371500000 29257000 26109000 27290000 0 0 0 28436000 30714000 33350000 0 0 0 30057000 28763000 24540000 0 0 0 38864000 39151000 34969000 0 0 0 12613 1180 12292 237126;237127;237128;237129;237130;237131;237132;237133;237134;237135;237136;237137 145340;145341;145342;145343;145344;145345 145341 6 LIDYGFHAPTMSFPVAGTLMVEPTESESK Unmodified 3153.5039 0.50387447 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 53.431 52.042 3;4 7.5752E-23 25442 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 162.47 161.86 2959500000 229970000 209890000 204140000 4540700 4777200 5492800 280390000 249520000 244610000 9679500 7176200 6096500 216480000 240560000 222810000 2855900 0 0 280760000 282360000 243650000 4604000 4826000 4329500 12614 1409 12293 237138;237139;237140;237141;237142;237143;237144;237145;237146;237147;237148;237149;237150;237151;237152;237153;237154;237155;237156;237157;237158;237159;237160;237161;237162;237163;237164;237165;237166;237167;237168;237169;237170;237171 145346;145347;145348;145349;145350;145351;145352;145353;145354;145355;145356;145357;145358;145359;145360;145361;145362;145363;145364;145365 145351 20 LIDYGFHAPTMSFPVAGTLMVEPTESESKVELDR Unmodified 3765.827 0.82699953 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.681 50.544 4 6.8655E-11 20306 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 107.95 106.47 155010000 0 0 0 13419000 12207000 12359000 0 0 0 14550000 13486000 15739000 0 5495400 5639000 0 5042900 5562100 0 10615000 0 12891000 14157000 13844000 12615 1409 12294 237172;237173;237174;237175;237176;237177;237178;237179;237180;237181;237182;237183;237184;237185 145366;145367;145368;145369;145370;145371;145372;145373;145374;145375 145368 10 LIEATFAER Unmodified 1048.5553 0.55530983 1150 P18335 argD Acetylornithine/succinyldiaminopimelate aminotransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.276 33.808 2 0.071538 15509 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 47.743 9.6097 255930000 24683000 23380000 19985000 0 0 0 19039000 21343000 21416000 0 0 0 19292000 18399000 15382000 0 0 0 25208000 24762000 23038000 0 0 0 12616 1150 12295 237186;237187;237188;237189;237190;237191;237192;237193;237194;237195;237196;237197 145376;145377;145378;145379;145380;145381;145382;145383;145384 145383 9 LIEATQFSMAHQDVR Oxidation (M) 1760.8516 0.85156821 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 7 9 7 25.327 23.801 2;3 3.0073E-11 7753 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 162.31 143.97 679260000 0 2640000 0 0 0 0 0 4332900 0 286950000 240190000 145150000 0 0 0 0 0 0 0 0 0 0 0 0 12617 497 12296 237198;237199;237200;237201;237202;237203;237204;237205;237206;237207;237208;237209;237210;237211;237212;237213;237214;237215;237216;237217;237218;237219;237220;237221;237222 145385;145386;145387;145388;145389;145390;145391;145392;145393;145394;145395;145396;145397;145398;145399;145400;145401;145402;145403;145404;145405;145406;145407;145408;145409;145410;145411;145412 145386 294 26 LIEATQFSMAHQDVR Unmodified 1744.8567 0.85665359 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 10 12 14 2 1 2 1 1 2 2 2 2 2 2 30.944 29.185 2;3 5.3805E-27 9950 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 233.46 185.18 14490000000 89894000 64818000 61866000 2423200 2000000 2414600 57115000 68164000 65788000 4492000000 4819700000 4289300000 43456000 41864000 38234000 0 6378600 3048500 80681000 78218000 80669000 36870000 32755000 32531000 12618 497 12296 237223;237224;237225;237226;237227;237228;237229;237230;237231;237232;237233;237234;237235;237236;237237;237238;237239;237240;237241;237242;237243;237244;237245;237246;237247;237248;237249;237250;237251;237252;237253;237254;237255;237256;237257;237258;237259;237260;237261;237262;237263;237264;237265;237266;237267;237268;237269;237270;237271;237272;237273;237274;237275;237276;237277;237278;237279;237280;237281;237282;237283;237284;237285;237286;237287;237288;237289;237290;237291;237292 145413;145414;145415;145416;145417;145418;145419;145420;145421;145422;145423;145424;145425;145426;145427;145428;145429;145430;145431;145432;145433;145434;145435;145436;145437;145438;145439;145440;145441;145442;145443;145444;145445;145446;145447;145448;145449;145450;145451;145452;145453;145454;145455;145456;145457;145458;145459;145460;145461;145462;145463;145464;145465;145466;145467;145468;145469;145470;145471;145472;145473;145474;145475;145476;145477;145478;145479;145480;145481;145482;145483;145484;145485;145486 145435 72 LIEEAEER Unmodified 987.48729 0.48728985 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 13.244 14.331 2 0.087512 3414 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 51.854 20.781 4730800 0 0 0 2115800 777400 1837600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12619 1475 12297 237293;237294;237295 145487;145488 145487 2 LIEECMILANISAAR Unmodified 1702.8746 0.87461184 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 48.988 47.728 2 0.00051527 23395 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.958 51.707 43155000 13394000 5091800 11566000 0 0 0 0 0 0 0 0 0 0 0 1875600 0 0 0 3408900 4028200 3790800 0 0 0 12620 1181 12298 237296;237297;237298;237299;237300;237301;237302 145489;145490 145489 0 LIEEEALK Unmodified 943.52261 0.52261272 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 20.467 20.881 2 0.045716 8221 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.682 25.188 230620000 31337000 26511000 28264000 0 0 909480 16354000 12705000 12953000 0 0 0 13584000 9463400 13153000 0 0 0 23668000 23104000 18613000 0 0 0 12621 1183 12299 237303;237304;237305;237306;237307;237308;237309;237310;237311;237312;237313;237314;237315 145491;145492 145491 2 LIEEEALKENTQEVHAIVPVPIASYLLNEK Unmodified 3388.813 0.81298767 1183 P21513 rne Ribonuclease E yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.821 50.531 4 4.705E-06 18179 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 74.65 74.495 105350000 0 19656000 0 6427900 6087700 4331600 7274900 8256800 10725000 7181600 4283300 7156600 0 0 0 0 2363600 0 0 12210000 0 2892500 3310000 3190100 12622 1183 12300 237316;237317;237318;237319;237320;237321;237322;237323;237324;237325;237326;237327;237328;237329;237330 145493;145494 145494 2 LIEGDAGEGK Unmodified 987.48729 0.48728985 1743 P69791 chbA N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.404 12.837 2 0.075958 3689 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 48.157 19.008 222030000 9207400 8251200 6843300 0 0 0 0 0 0 8846000 8124600 9416900 0 50538000 4291200 26200000 18106000 18704000 0 48448000 0 2750500 0 2300200 12623 1743 12301 237331;237332;237333;237334;237335;237336;237337;237338;237339;237340;237341;237342;237343;237344 145495 145495 0 LIEGTVAAVPPQGGR Unmodified 1463.8096 0.80962704 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.289 24.97 2;3 1.8323E-08 11031 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 140.07 130.39 352570000 32313000 21687000 27462000 0 0 0 39727000 27832000 30125000 2742600 3535800 3072500 21927000 20352000 25237000 0 0 0 34231000 26997000 31278000 1272900 1265600 1512300 12624 244 12302 237345;237346;237347;237348;237349;237350;237351;237352;237353;237354;237355;237356;237357;237358;237359;237360;237361;237362;237363 145496;145497;145498;145499;145500;145501;145502;145503;145504;145505;145506;145507;145508;145509;145510;145511;145512;145513;145514;145515;145516;145517;145518;145519;145520;145521;145522;145523;145524;145525;145526;145527;145528 145514 33 LIELAFGR Unmodified 917.53345 0.53345218 1028 P0AGL5 ratA Ribosome association toxin RatA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.05 37.439 2 0.00022905 15258 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 151.17 138.18 181870000 7652100 5086900 6158000 1065300 1355000 1074400 10710000 12644000 11319000 9979600 8630800 9310400 9121800 5528300 5662800 3261400 1949900 2392600 15790000 14256000 14450000 8749900 7730700 7993900 12625 1028 12303 237364;237365;237366;237367;237368;237369;237370;237371;237372;237373;237374;237375;237376;237377;237378;237379;237380;237381;237382;237383;237384;237385;237386;237387 145529;145530;145531;145532;145533;145534;145535;145536;145537;145538;145539;145540;145541;145542 145530 10 LIELALER Unmodified 955.57023 0.57023162 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 35.399 33.858 2 0.00071397 16256 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 126.28 70.602 819580000 66322000 49724000 44891000 0 0 0 82925000 71827000 81427000 0 0 0 67221000 76154000 70885000 0 0 0 67392000 70818000 69992000 0 0 0 12626 253 12304 237388;237389;237390;237391;237392;237393;237394;237395;237396;237397;237398;237399;237400 145543;145544;145545;145546;145547;145548;145549;145550;145551;145552;145553;145554 145546 12 LIELVGGR Unmodified 855.5178 0.51780212 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 27.919 26.713 2 0.000249 11651 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 150.02 123.22 4171400000 17865000 15604000 15866000 3285000 3426200 2519100 375080000 339590000 299300000 138220000 147540000 137300000 332330000 295270000 276920000 30516000 24856000 25413000 479230000 482020000 441410000 96781000 96681000 94408000 12627 1442 12305 237401;237402;237403;237404;237405;237406;237407;237408;237409;237410;237411;237412;237413;237414;237415;237416;237417;237418;237419;237420;237421;237422;237423;237424;237425 145555;145556;145557;145558;145559;145560;145561;145562;145563;145564;145565;145566;145567;145568;145569;145570;145571;145572;145573;145574;145575;145576 145575 21 LIEPLIR Unmodified 852.54329 0.54328858 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.345 29.989 2 0.00055091 13846 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.14 28.644 3239900000 358390000 288810000 314980000 0 0 0 297870000 272210000 299800000 0 0 0 215280000 214910000 183010000 0 0 0 261180000 271260000 262240000 0 0 0 12628 94 12306 237426;237427;237428;237429;237430;237431;237432;237433;237434;237435;237436;237437 145577;145578;145579;145580;145581;145582;145583;145584;145585;145586;145587;145588 145585 12 LIEQQAVIAAL Unmodified 1167.6863 0.68632401 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.087 49.797 2 0.0001292 24646 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.28 112.3 1202400000 91229000 78011000 73018000 1322700 1335500 1604700 111680000 115350000 110250000 0 1163000 0 92395000 84210000 83441000 0 0 0 122500000 128080000 103880000 1261500 1717000 0 12629 158 12307 237438;237439;237440;237441;237442;237443;237444;237445;237446;237447;237448;237449;237450;237451;237452;237453;237454;237455 145589;145590;145591;145592;145593;145594;145595;145596;145597;145598;145599;145600 145589 12 LIESGDWLDRDK Unmodified 1445.7151 0.71505795 833 P0AE48 ytfP Gamma-glutamylcyclotransferase family protein YtfP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.336 27.069 3 5.5537E-06 12272 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.43 102.9 423600000 55533000 52555000 46035000 980630 0 0 28924000 28337000 26647000 0 0 0 25143000 27299000 30482000 0 0 0 30746000 34832000 36079000 0 0 0 12630 833 12308 237456;237457;237458;237459;237460;237461;237462;237463;237464;237465;237466;237467;237468 145601;145602;145603;145604;145605;145606 145603 6 LIEVPVEYIAGK Unmodified 1329.7544 0.75440357 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5 4 4 1 2 1 16 9 15 1 2 1 6 5 8 47.114 46.107 2;3 1.1967E-06 17733 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 111.06 94.859 67763000000 561850000 596080000 466420000 23988000 33762000 24699000 364930000 353790000 345600000 4636200000 4463400000 3549700000 474410000 453960000 463800000 12992000000 11383000000 11018000000 635020000 557550000 569550000 5234600000 4018600000 4542300000 12631 463 12309 237469;237470;237471;237472;237473;237474;237475;237476;237477;237478;237479;237480;237481;237482;237483;237484;237485;237486;237487;237488;237489;237490;237491;237492;237493;237494;237495;237496;237497;237498;237499;237500;237501;237502;237503;237504;237505;237506;237507;237508;237509;237510;237511;237512;237513;237514;237515;237516;237517;237518;237519;237520;237521;237522;237523;237524;237525;237526;237527;237528;237529;237530;237531;237532;237533;237534;237535;237536;237537;237538;237539;237540;237541;237542;237543;237544;237545;237546;237547;237548;237549;237550;237551;237552;237553;237554;237555;237556;237557 145607;145608;145609;145610;145611;145612;145613;145614;145615;145616;145617;145618;145619;145620;145621;145622;145623;145624;145625;145626;145627;145628;145629;145630;145631;145632;145633;145634;145635;145636;145637;145638;145639;145640;145641;145642;145643;145644;145645;145646;145647;145648;145649;145650;145651;145652;145653;145654;145655;145656;145657;145658;145659;145660;145661;145662;145663;145664;145665;145666;145667;145668;145669;145670;145671;145672;145673;145674;145675;145676;145677;145678;145679;145680;145681;145682;145683;145684;145685;145686;145687;145688;145689;145690;145691;145692;145693;145694;145695;145696;145697;145698;145699;145700;145701;145702;145703;145704;145705;145706;145707;145708 145621 94 LIFADIK Unmodified 818.49019 0.49019038 1289 P27128 rfaI Lipopolysaccharide 1,3-galactosyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.943 33.162 2 0.02496 16123 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.138 57.725 99621000 3026200 0 0 0 405880 0 13414000 10367000 12837000 3820800 3180600 3516100 5540000 5525400 6147900 0 0 0 8758300 8805600 10125000 1210900 1617800 1322200 12632 1289 12310 237558;237559;237560;237561;237562;237563;237564;237565;237566;237567;237568;237569;237570;237571;237572;237573;237574 145709;145710;145711;145712;145713 145711 5 LIFDKESHR Unmodified 1143.6037 0.60365701 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 3 3 4 4 5 1 2 1 2 3 3 3 2 3 2 2 2 2 2 3 3 3 4 13.138 13.779 1;2;3 1.3559E-15 3472 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 231.2 210.65 14917000000 27392000 25408000 29648000 2832700000 2938500000 2826300000 15748000 31415000 11129000 218690000 187180000 211530000 18647000 12814000 15528000 86182000 35579000 54304000 29392000 23735000 37194000 1737200000 1759700000 1751400000 12633 542 12311 237575;237576;237577;237578;237579;237580;237581;237582;237583;237584;237585;237586;237587;237588;237589;237590;237591;237592;237593;237594;237595;237596;237597;237598;237599;237600;237601;237602;237603;237604;237605;237606;237607;237608;237609;237610;237611;237612;237613;237614;237615;237616;237617;237618;237619;237620;237621;237622;237623;237624;237625;237626;237627;237628;237629;237630;237631;237632;237633;237634;237635;237636;237637;237638 145714;145715;145716;145717;145718;145719;145720;145721;145722;145723;145724;145725;145726;145727;145728;145729;145730;145731;145732;145733;145734;145735;145736;145737;145738;145739;145740 145727 27 LIFMGVEHTQPEK Unmodified 1527.7755 0.77554972 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.724 25.593 3 0.00025153 11607 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 78.324 76.011 381010000 50380000 48572000 36674000 0 0 0 23929000 27362000 22768000 0 0 0 24554000 28783000 23250000 0 0 0 30398000 27503000 36836000 0 0 0 12634 953 12312 237639;237640;237641;237642;237643;237644;237645;237646;237647;237648;237649;237650 145741;145742;145743;145744;145745;145746 145744 6 LIFPNPK Unmodified 827.49052 0.49052473 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 26.804 25.786 2 0.0029824 12204 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 109.88 98.585 2614700000 234590000 235530000 215850000 0 0 0 236280000 251540000 232650000 0 0 0 188310000 155790000 152740000 0 0 0 245530000 238880000 227040000 0 0 0 12635 1132 12313 237651;237652;237653;237654;237655;237656;237657;237658;237659;237660;237661;237662;237663 145747;145748;145749;145750;145751;145752;145753;145754;145755;145756;145757;145758;145759 145748 13 LIFSGFIAHFTK Unmodified 1379.7602 0.76015765 117 P05719 hsdS Type-1 restriction enzyme EcoKI specificity protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.153 45.703 3 0.0099273 22332 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 55.261 54.847 68177000 4131900 3929100 4730900 487960 0 0 0 6506200 6257600 0 0 745590 5048800 5062000 3606600 0 0 0 8147700 8349700 7769500 1313000 1204500 886350 12636 117 12314 237664;237665;237666;237667;237668;237669;237670;237671;237672;237673;237674;237675;237676;237677;237678;237679 145760;145761;145762 145760 3 LIGDDEHGWDDDGVFNFEGGCYAK Unmodified 2715.1184 0.11836017 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 48.264 46.935 2;3 1.0262E-49 22999 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 300.29 296.32 5183200000 673720000 713350000 607300000 1000300 0 1339700 284660000 276440000 257520000 0 0 0 409240000 337110000 364750000 0 0 0 414140000 444540000 398060000 0 0 0 12637 1195 12315 237680;237681;237682;237683;237684;237685;237686;237687;237688;237689;237690;237691;237692;237693;237694;237695;237696;237697;237698;237699;237700;237701;237702;237703;237704;237705 145763;145764;145765;145766;145767;145768;145769;145770;145771;145772;145773;145774;145775;145776;145777;145778;145779;145780;145781;145782;145783;145784;145785;145786 145776 24 LIGDWLVK Unmodified 942.55385 0.55385327 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1 1 1 1 1 1 1 1 43.441 41.969 1;2 0.0040258 20829 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.942 83.463 804490000 252910000 245980000 225400000 0 0 0 12932000 11073000 11787000 0 0 0 7113100 5597400 5430000 0 0 0 8868800 8470000 8937200 0 0 0 12638 1525 12316 237706;237707;237708;237709;237710;237711;237712;237713;237714;237715;237716;237717;237718;237719;237720;237721 145787;145788;145789;145790;145791;145792;145793;145794;145795;145796;145797;145798;145799 145788 12 LIGGQIAPDHGEILFDGENIPAMSR Unmodified 2649.3221 0.32208578 1663 P63386 mlaF Probable phospholipid import ATP-binding protein MlaF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 46.394 45.144 3 2.3244E-07 18360 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 108.44 95.387 119170000 12285000 15232000 9755400 0 3359900 4551600 0 0 0 13940000 14835000 12699000 0 0 0 5717100 3340500 3871900 0 0 0 0 9840700 9742200 12639 1663 12317 237722;237723;237724;237725;237726;237727;237728;237729;237730;237731;237732;237733;237734 145800;145801;145802;145803;145804;145805 145800 6 LIGHHIADEQVTDILR Unmodified 1828.9795 0.97954591 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 2 2 3 3 3 1 2 3 3 3 1 2 3 3 3 1 1 29.253 27.985 2;3;4 1.4515E-30 13170 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 265.22 235.04 6319500000 569850000 524180000 507530000 3447600 2494600 3846400 432080000 456060000 464250000 0 3792900 4535700 481190000 571050000 502540000 1904400 2423000 0 627980000 588710000 567540000 0 1782300 2255500 12640 161 12318 237735;237736;237737;237738;237739;237740;237741;237742;237743;237744;237745;237746;237747;237748;237749;237750;237751;237752;237753;237754;237755;237756;237757;237758;237759;237760;237761;237762;237763;237764;237765;237766;237767;237768;237769;237770;237771;237772;237773;237774;237775;237776;237777;237778;237779;237780;237781;237782;237783;237784 145806;145807;145808;145809;145810;145811;145812;145813;145814;145815;145816;145817;145818;145819;145820;145821;145822;145823;145824;145825;145826;145827;145828;145829;145830;145831;145832;145833;145834;145835;145836;145837;145838;145839;145840;145841 145814 36 LIGHPTTTLAESVSHLFNVNN Unmodified 2263.1597 0.15969512 1523 P39315 qorB Quinone oxidoreductase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 48.348 47.055 3 7.199E-11 23481 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130.39 126.12 256040000 33615000 37041000 42158000 0 0 0 21976000 0 24817000 0 0 0 16215000 11641000 15743000 0 0 0 19469000 17203000 16167000 0 0 0 12641 1523 12319 237785;237786;237787;237788;237789;237790;237791;237792;237793;237794;237795 145842;145843;145844;145845;145846 145842 5 LIGIMSR Unmodified 788.45784 0.4578444 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.822 25.731 2 0.0018451 11112 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 122.79 105.02 1084500000 53897000 42041000 43381000 0 0 0 102750000 100320000 102430000 22183000 22442000 17389000 100470000 89269000 85082000 11715000 7942400 8808000 89900000 92602000 91869000 0 0 0 12642 1196 12320 237796;237797;237798;237799;237800;237801;237802;237803;237804;237805;237806;237807;237808;237809;237810;237811;237812;237813 145847;145848;145849;145850;145851;145852;145853;145854;145855 145854 7 LIGSDDQSDIALLQIQNPSK Unmodified 2154.1168 0.11682726 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 2 1 2 2 2 1 1 2 2 2 1 1 46.546 44.895 2;3 2.2042E-38 22226 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 307.87 283.58 346990000 44849000 20358000 19886000 4186900 3704100 2014800 48118000 21975000 42382000 8216300 7440200 2372100 10669000 24208000 29091000 0 0 0 31198000 13953000 12371000 0 0 0 12643 1507 12321 237814;237815;237816;237817;237818;237819;237820;237821;237822;237823;237824;237825;237826;237827;237828;237829;237830;237831;237832;237833;237834;237835;237836;237837;237838;237839;237840;237841 145856;145857;145858;145859;145860;145861;145862;145863;145864;145865;145866;145867;145868;145869;145870;145871 145860 15 LIGTVGTAQK Unmodified 986.57605 0.57604528 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.996 15.817 2 0.00028776 5069 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 88.294 72.662 991890000 134290000 111820000 126260000 459590 561180 637830 142240000 160370000 150330000 0 0 0 0 35039000 34926000 0 0 0 34717000 27507000 32744000 0 0 0 12644 1316 12322 237842;237843;237844;237845;237846;237847;237848;237849;237850;237851;237852;237853;237854;237855;237856 145872;145873;145874;145875;145876 145876 5 LIGVDILTMPGVAGHA Unmodified 1562.849 0.84904901 467 P0A8W5 yqgE UPF0301 protein YqgE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 53.632 52.276 2 2.0304E-13 25408 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 163.32 138.1 805660000 108580000 103470000 98187000 6238600 7238800 7797800 34579000 41175000 40530000 6891900 11174000 11553000 44723000 43943000 43800000 4022700 0 0 54877000 56960000 59773000 7507900 5827300 6816200 12645 467 12323 237857;237858;237859;237860;237861;237862;237863;237864;237865;237866;237867;237868;237869;237870;237871;237872;237873;237874;237875;237876;237877;237878;237879 145877;145878;145879;145880;145881;145882;145883;145884;145885;145886;145887;145888;145889;145890 145883 12 LIHEHCER Unmodified 1092.5135 0.51346179 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.987 8.5279 3 0.0012294 1897 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 90.657 88.34 251330000 0 0 0 0 0 0 1748100 935630 5437700 44651000 31557000 24409000 20688000 18091000 15179000 0 7776400 6559600 13003000 13086000 12727000 10814000 16952000 7714100 12646 1739 12324 237880;237881;237882;237883;237884;237885;237886;237887;237888;237889;237890;237891;237892;237893;237894;237895;237896 145891;145892;145893;145894;145895;145896;145897 145892 6 LIHGGLR Unmodified 764.46571 0.46570697 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.857 12.464 2 0.0045348 2832 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 103.41 88.188 2256100000 10091000 9629700 9609500 4308400 3087100 2724900 292200000 282440000 278940000 209270000 175640000 185960000 109740000 113740000 98413000 33421000 8093500 11946000 116040000 100280000 117730000 31627000 24182000 26959000 12647 1088 12325 237897;237898;237899;237900;237901;237902;237903;237904;237905;237906;237907;237908;237909;237910;237911;237912;237913;237914;237915;237916;237917;237918;237919;237920 145898;145899;145900;145901;145902;145903;145904;145905;145906;145907;145908;145909;145910;145911;145912;145913;145914;145915;145916;145917 145902 20 LIHGQVATR Unmodified 993.57196 0.57196295 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.216 11.853 2 4.6943E-05 2525 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 132.08 121.67 3262700000 62192000 75674000 57544000 0 8996900 12206000 431860000 484260000 481630000 87695000 90717000 86491000 203650000 206590000 194550000 171970000 0 0 168510000 190750000 177600000 21019000 24234000 24518000 12648 1745 12326 237921;237922;237923;237924;237925;237926;237927;237928;237929;237930;237931;237932;237933;237934;237935;237936;237937;237938;237939;237940;237941;237942;237943 145918;145919;145920;145921;145922;145923;145924;145925;145926;145927;145928;145929;145930;145931;145932 145920 15 LIHIWSVPVEYLTR Unmodified 1724.9614 0.96137665 1068 P11350 narI Respiratory nitrate reductase 1 gamma chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.358 47.954 3 4.6239E-06 22332 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 107.17 101.7 174960000 6925800 7004000 7135900 1111700 0 0 19316000 16571000 0 7089200 4127800 6341200 15246000 12926000 15465000 0 0 0 14204000 15318000 16454000 4227100 2730300 2769000 12649 1068 12327 237944;237945;237946;237947;237948;237949;237950;237951;237952;237953;237954;237955;237956;237957;237958;237959;237960;237961;237962 145933;145934;145935;145936;145937;145938;145939;145940;145941;145942;145943;145944;145945;145946 145945 6 LIIEELLEDGSDPDALYTIEHHLSADDLETLEK Unmodified 3735.8255 0.82546243 919 P0AF90 rraB Regulator of ribonuclease activity B yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.006 53.532 4 1.3092E-33 25299 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 191.12 189.45 4148700000 563240000 546380000 544520000 0 0 0 327470000 313730000 353200000 0 0 0 174820000 174140000 175780000 0 0 0 363400000 311330000 300710000 0 0 0 12650 919 12328 237963;237964;237965;237966;237967;237968;237969;237970;237971;237972;237973;237974 145947;145948;145949 145949 3 LIIEPVR Unmodified 838.52764 0.52763852 838 P0AE72 mazE Antitoxin MazE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 26.289 25.084 2 0.0071055 11452 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 92.692 62.468 54830000 8885600 7559500 7311100 804400 0 882270 8517500 0 0 0 603460 0 4525800 3808600 4385500 0 0 0 5996100 0 0 794780 0 755510 12651 838 12329 237975;237976;237977;237978;237979;237980;237981;237982;237983;237984;237985;237986;237987 145950;145951;145952;145953;145954 145950 5 LIIGDKEIFGISR Unmodified 1459.8399 0.83986454 126 P06709 birA Bifunctional ligase/repressor BirA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.358 37.661 3 0.02271 17465 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 42.785 40.15 50875000 5476500 0 3568700 0 0 0 5204100 5675500 3503000 0 0 0 3698500 3360400 3084500 0 0 0 5987500 6207700 5108500 0 0 0 12652 126 12330 237988;237989;237990;237991;237992;237993;237994;237995;237996;237997;237998 145955 145955 1 LIISDHLDLLANHDFR Unmodified 1890.9952 0.99519598 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 1 2 1 1 1 1 3 2 2 1 1 1 41.078 39.62 2;3;4 2.8573E-11 14567 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 160.38 149.47 1049600000 27090000 30341000 28144000 4251400 4277200 5382400 15371000 18089000 10927000 4152900 1912700 0 10857000 10170000 9504800 271200000 192320000 361440000 16490000 13992000 13644000 0 0 0 12653 1249 12331 237999;238000;238001;238002;238003;238004;238005;238006;238007;238008;238009;238010;238011;238012;238013;238014;238015;238016;238017;238018;238019;238020;238021;238022;238023;238024;238025;238026;238027;238028 145956;145957;145958;145959;145960;145961;145962;145963;145964;145965;145966;145967;145968;145969;145970;145971 145958 15 LIITHVSSR Unmodified 1024.6029 0.60292873 462 P0A8V0 rbn Ribonuclease BN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.349 15.114 2 0.00029763 4894 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 118.06 81.664 99898000 6981200 7015500 6807700 0 0 0 5135400 9095900 6852400 0 0 0 8452300 6529900 8425400 0 0 0 9926300 9932200 14744000 0 0 0 12654 462 12332 238029;238030;238031;238032;238033;238034;238035;238036;238037;238038;238039;238040 145972;145973;145974;145975;145976;145977;145978;145979;145980;145981;145982 145976 8 LIITITEGIPTLDMLTVK Unmodified 1970.1374 0.13735169 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 55.407 53.94 2;3 2.8524E-17 26891 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 200.21 200.21 5564800000 772100000 655380000 639710000 2466900 1792100 0 236950000 192420000 213320000 1628900 0 0 355610000 287150000 255040000 0 0 0 761340000 654820000 535080000 0 0 0 12655 1013 12333 238041;238042;238043;238044;238045;238046;238047;238048;238049;238050;238051;238052;238053;238054;238055;238056;238057;238058;238059;238060;238061;238062;238063;238064;238065;238066;238067 145983;145984;145985;145986;145987;145988;145989;145990;145991;145992;145993;145994;145995;145996;145997;145998;145999;146000;146001;146002;146003;146004;146005;146006 145995 24 LIKPLLGTLEYGLPHK Unmodified 1791.0658 0.065841726 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 1 3 3 3 2 3 2 38.29 36.579 2;3;4 5.5256E-07 18273 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.6 106.58 2236400000 184140000 165740000 191320000 881810 614060 0 323700000 264700000 282550000 866090 0 0 161620000 165540000 142230000 0 0 0 104890000 122700000 124870000 0 0 0 12656 214 12334 238068;238069;238070;238071;238072;238073;238074;238075;238076;238077;238078;238079;238080;238081;238082;238083;238084;238085;238086;238087;238088;238089;238090;238091;238092;238093;238094;238095;238096;238097;238098;238099;238100;238101;238102;238103;238104 146007;146008;146009;146010;146011;146012;146013;146014;146015;146016;146017;146018;146019;146020;146021;146022;146023;146024;146025;146026;146027;146028;146029;146030 146008 24 LIKPWLK Unmodified 896.58476 0.58475947 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 22.116 21.942 2 0.089422 9202 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 62.715 62.715 91702000 8652200 9351600 0 0 0 0 9922600 11068000 10072000 0 0 0 0 5404600 6489500 0 0 0 8581600 10321000 11839000 0 0 0 12657 1900 12335 238105;238106;238107;238108;238109;238110;238111;238112;238113;238114 146031 146031 1 LILALVFAAK Unmodified 1057.69 0.68995282 1410 P33218 yebE Inner membrane protein YebE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.361 51.93 2 0.0060331 20980 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 66.073 66.073 36860000 0 0 0 2397200 2613300 2772100 2057400 2422900 2386200 2792200 4149000 3180400 0 935150 762390 0 0 0 1846200 1608700 1292800 0 3078900 2565000 12658 1410 12336 238115;238116;238117;238118;238119;238120;238121;238122;238123;238124;238125;238126;238127;238128;238129;238130;238131 146032;146033;146034;146035;146036;146037;146038 146032 7 LILASTSPWR Unmodified 1142.6448 0.64479354 304 P0A729 yceF Maf-like protein YceF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.763 35.105 2 0.00039354 17492 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.08 107.88 644530000 82172000 74480000 72390000 275660 0 0 60925000 69032000 68634000 0 0 0 29377000 32763000 33506000 0 0 0 43399000 41508000 36073000 0 0 0 12659 304 12337 238132;238133;238134;238135;238136;238137;238138;238139;238140;238141;238142;238143;238144 146039;146040;146041;146042;146043;146044 146039 5 LILASTSPWRR Unmodified 1298.7459 0.74590457 304 P0A729 yceF Maf-like protein YceF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.864 39.252 2 0.0031745 19007 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.064 79.283 2196600000 361930000 343630000 326150000 5127700 4935100 6024700 191830000 171410000 162730000 7724900 6499700 7023500 93934000 96975000 102720000 3387100 1792500 1794000 97797000 106270000 92656000 1496300 1368200 1445800 12660 304 12338 238145;238146;238147;238148;238149;238150;238151;238152;238153;238154;238155;238156;238157;238158;238159;238160;238161;238162;238163;238164;238165;238166;238167;238168 146045;146046;146047;146048;146049;146050;146051;146052;146053;146054;146055;146056;146057;146058;146059;146060;146061 146057 17 LILDAAPDLR Unmodified 1095.6288 0.62880913 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.09 36.244 2 0.00011949 14371 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 128.69 73.316 218840000 6017600 4873700 3898700 6070500 3409600 5066200 24464000 26890000 26662000 12730000 11288000 12081000 8817300 7367600 9535500 0 0 0 13795000 10686000 12143000 4019000 5072100 3955600 12661 1476 12339 238169;238170;238171;238172;238173;238174;238175;238176;238177;238178;238179;238180;238181;238182;238183;238184;238185;238186;238187;238188;238189;238190;238191 146062;146063;146064;146065;146066;146067;146068;146069;146070;146071;146072;146073 146063 12 LILLTADRPPELIDCGANQAIR Unmodified 2448.3159 0.31587819 1134 P17109 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.643 43.128 3 4.8618E-10 21062 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 114.88 100.58 238220000 18017000 16839000 18958000 0 0 0 19241000 22904000 23842000 0 0 0 16847000 16035000 13467000 0 0 0 25756000 25309000 21001000 0 0 0 12662 1134 12340 238192;238193;238194;238195;238196;238197;238198;238199;238200;238201;238202;238203 146074;146075 146074 2 LILLVLDAAR Unmodified 1095.7016 0.70158014 969 P0AFX4 rsd Regulator of sigma D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.952 49.599 2 1.5138E-07 24527 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 178.83 178.83 331070000 41445000 48066000 36331000 7212600 8146300 6971200 21220000 17120000 13754000 7613600 9596300 7538800 13820000 9128300 10762000 0 0 0 17436000 17173000 20567000 5480300 6508700 5184000 12663 969 12341 238204;238205;238206;238207;238208;238209;238210;238211;238212;238213;238214;238215;238216;238217;238218;238219;238220;238221;238222;238223;238224 146076;146077;146078;146079;146080;146081;146082;146083;146084;146085;146086;146087;146088;146089;146090;146091;146092;146093;146094;146095;146096 146080 21 LILPLAIGK Unmodified 936.63719 0.63718897 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.011 44.538 2 0.0045383 20653 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 77.674 77.674 715590000 62682000 74056000 67234000 0 0 0 65041000 63345000 65444000 0 0 0 51125000 43377000 43885000 0 0 0 55932000 66061000 57407000 0 0 0 12664 164 12342 238225;238226;238227;238228;238229;238230;238231;238232;238233;238234;238235;238236 146097;146098;146099;146100;146101;146102;146103;146104;146105;146106;146107;146108 146108 12 LILSNQYK Unmodified 977.55458 0.55458155 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 2 1 1 1 1 1 1 1 20.732 21.117 2 0.00075894 8541 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 124.37 107.6 2212900000 219140000 202380000 167500000 0 0 0 260380000 275740000 294900000 0 0 0 131350000 125850000 106540000 0 0 0 142750000 143760000 142570000 0 0 0 12665 468 12343 238237;238238;238239;238240;238241;238242;238243;238244;238245;238246;238247;238248;238249;238250 146109;146110;146111;146112;146113;146114;146115 146111 7 LILSQLGEEGR Unmodified 1213.6667 0.6666512 1619 P60390 rsmH Ribosomal RNA small subunit methyltransferase H yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.758 31.361 2 4.4173E-14 14880 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 204.07 163.04 294090000 33962000 31172000 25246000 0 0 0 29720000 25171000 22572000 0 1604600 0 22040000 18360000 22067000 0 0 1615900 20585000 18949000 21019000 0 0 0 12666 1619 12344 238251;238252;238253;238254;238255;238256;238257;238258;238259;238260;238261;238262;238263;238264 146116;146117;146118;146119;146120;146121;146122;146123;146124;146125;146126;146127 146120 12 LILTAAQLDALK Unmodified 1268.7704 0.77038799 831 P0AE37 astA Arginine N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 43 41.556 2 3.7542E-06 20177 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.68 126.46 177270000 56105000 63170000 57029000 608680 0 355430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12667 831 12345 238265;238266;238267;238268;238269 146128;146129;146130 146129 3 LILVCGR Unmodified 829.48439 0.4843935 403 P0A873 trmD tRNA (guanine-N(1)-)-methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 24.591 23.552 2 0.0019993 10393 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.06 97.021 163300000 0 0 0 0 0 0 7499700 6025000 9133200 0 0 0 18476000 14804000 17407000 0 0 0 30969000 29135000 29848000 0 0 0 12668 403 12346 238270;238271;238272;238273;238274;238275;238276;238277;238278 146131;146132;146133;146134;146135;146136 146132 6 LIMATGSYPWIPPIK Unmodified 1685.9215 0.92148567 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 52.738 51.438 2 0.010736 25159 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 67.022 52.865 85280000 0 0 0 0 0 0 0 0 9725400 0 0 0 16309000 11167000 13568000 0 0 0 9704100 11072000 13735000 0 0 0 12669 180 12347 238279;238280;238281;238282;238283;238284;238285 146137;146138;146139 146138 3 LIMDQIILQMGQK Unmodified 1529.831 0.83095611 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 1 2 2 2 1 52.131 50.924 2;3 7.7189E-09 24861 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 213.03 209.36 1765800000 151410000 160650000 134140000 2636300 2290800 2342900 145590000 131350000 127280000 0 0 0 146000000 137210000 124950000 2307500 0 0 150230000 168870000 176810000 0 0 1697400 12670 688 12348 238286;238287;238288;238289;238290;238291;238292;238293;238294;238295;238296;238297;238298;238299;238300;238301;238302;238303;238304;238305;238306;238307;238308;238309;238310;238311;238312;238313;238314 146140;146141;146142;146143;146144;146145;146146;146147;146148;146149;146150;146151;146152;146153;146154;146155;146156;146157;146158;146159;146160;146161;146162;146163 146154 24 LIMGLADGEVLVDGR Unmodified 1556.8232 0.82322819 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 5 1 1 1 4 4 5 1 2 4 4 3 4 5 5 50.544 49.169 2;3 1.0791E-11 23197 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 206.97 198.39 2985900000 265700000 272950000 247620000 1621800 1355300 1497500 205020000 196570000 197990000 1194800 3753200 0 291800000 343360000 260230000 0 0 0 240770000 231160000 223340000 0 0 0 12671 271 12349 238315;238316;238317;238318;238319;238320;238321;238322;238323;238324;238325;238326;238327;238328;238329;238330;238331;238332;238333;238334;238335;238336;238337;238338;238339;238340;238341;238342;238343;238344;238345;238346;238347;238348;238349;238350;238351;238352;238353;238354;238355;238356;238357;238358;238359;238360;238361;238362;238363;238364;238365;238366;238367;238368;238369;238370;238371;238372;238373 146164;146165;146166;146167;146168;146169;146170;146171;146172;146173;146174;146175;146176;146177;146178;146179;146180;146181;146182;146183;146184;146185;146186;146187;146188;146189;146190;146191;146192;146193;146194;146195;146196;146197;146198;146199;146200;146201;146202;146203;146204;146205;146206;146207;146208;146209;146210;146211;146212;146213;146214;146215 146191 39 LIMGLADGEVLVDGR Oxidation (M) 1572.8181 0.81814282 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 3 3 2 2 43.275 41.859 2 0.00037734 19816 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 68.676 59.672 53446000 12581000 3522500 0 0 0 0 0 7360000 0 0 0 0 2616600 6842400 7350600 0 0 0 0 7914100 5258800 0 0 0 12672 271 12349 238374;238375;238376;238377;238378;238379;238380;238381;238382;238383;238384;238385;238386;238387;238388;238389;238390 146216;146217;146218;146219;146220;146221 146219 130 0 LIMNTNR Unmodified 860.45382 0.45382165 725 P0ACE7 hinT HIT-like protein HinT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.296 14.972 2 0.00055091 4773 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 151.14 99.569 2338600000 235180000 191580000 171760000 4248500 3414400 3402100 239230000 205990000 202990000 3634600 3375400 2930200 177420000 176100000 162260000 0 0 0 187030000 179870000 179740000 2565600 3155100 2734600 12673 725 12350 238391;238392;238393;238394;238395;238396;238397;238398;238399;238400;238401;238402;238403;238404;238405;238406;238407;238408;238409;238410;238411 146222;146223;146224;146225;146226;146227;146228;146229;146230;146231;146232;146233;146234;146235;146236;146237 146224 16 LINAEGK Unmodified 743.41775 0.41775372 1174 P21179 katE Catalase HPII yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.438 12.235 2 0.026174 3218 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 70.912 33.884 393180000 72056000 60675000 9846800 1100800 0 0 63284000 58949000 65014000 0 0 0 0 0 0 0 0 0 25730000 19316000 17208000 0 0 0 12674 1174 12351 238412;238413;238414;238415;238416;238417;238418;238419;238420;238421 146238;146239 146239 2 LINAEGKATFVR Unmodified 1317.7405 0.74048484 1174 P21179 katE Catalase HPII yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 17.346 17.357 3 0.12196 4913 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 21.631 0.40164 72859000 0 0 0 0 0 0 0 0 0 0 3434900 3067700 0 0 0 25925000 16954000 18504000 0 0 0 3177100 0 1796200 12675 1174 12352 238422;238423;238424;238425;238426;238427;238428 146240 146240 1 LINAVQDVYLDSK Unmodified 1476.7824 0.78240924 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37 35.134 2 9.1177E-07 17395 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 137.17 128.42 256380000 21979000 41777000 0 1507100 1965400 1270300 50346000 49754000 51922000 2174500 1703900 1975700 5298200 2867400 0 0 0 0 7248300 7407600 7186700 0 0 0 12676 498 12353 238429;238430;238431;238432;238433;238434;238435;238436;238437;238438;238439;238440;238441;238442;238443;238444 146241;146242;146243;146244;146245;146246 146241 3 LINDAYDSEYFATK Unmodified 1648.7621 0.76206772 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 3 3 2 1 1 1 3 2 3 1 1 1 3 2 2 1 1 1 35.75 34.172 2;3 3.9084E-11 16166 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.17 161.08 12221000000 266110000 251520000 221630000 4687800 4001200 3392300 1250300000 1334700000 1437600000 6436100 6297000 6146600 1308100000 1173600000 1109400000 9470500 5644200 5258900 1313200000 1253700000 1230400000 7284500 6348200 5960600 12677 239 12354 238445;238446;238447;238448;238449;238450;238451;238452;238453;238454;238455;238456;238457;238458;238459;238460;238461;238462;238463;238464;238465;238466;238467;238468;238469;238470;238471;238472;238473;238474;238475;238476;238477;238478;238479;238480;238481;238482;238483;238484;238485 146247;146248;146249;146250;146251;146252;146253;146254;146255;146256;146257;146258;146259;146260;146261;146262;146263;146264;146265;146266;146267;146268;146269;146270;146271;146272;146273 146267 25 LINDVQDVLDEQLAGLAK Unmodified 1953.0419 0.0418714 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 54.48 53.026 2;3 5.1214E-18 25080 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 228.7 208.49 2024900000 38813000 41192000 43682000 0 0 0 261370000 245960000 211440000 0 0 0 227610000 222700000 247430000 0 0 0 162950000 166560000 155150000 0 0 0 12678 1806 12355 238486;238487;238488;238489;238490;238491;238492;238493;238494;238495;238496;238497;238498;238499;238500;238501;238502;238503;238504;238505;238506 146274;146275;146276;146277;146278;146279;146280;146281;146282;146283;146284;146285;146286;146287;146288;146289;146290;146291 146288 18 LINEGIK Unmodified 785.4647 0.46470391 81 P03813 ygeA Uncharacterized protein YgeA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 2 1 1 1 1 1 1 14.68 15.386 2 0.095134 4811 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 54.787 19.586 284120000 23929000 33308000 21379000 0 0 0 26001000 24539000 25884000 0 0 0 15143000 16918000 14383000 0 0 0 21607000 20359000 19364000 11057000 0 10255000 12679 81 12356 238507;238508;238509;238510;238511;238512;238513;238514;238515;238516;238517;238518;238519;238520;238521 146292;146293;146294;146295;146296;146297 146297 6 LINEGIKQR Unmodified 1069.6244 0.62439245 81 P03813 ygeA Uncharacterized protein YgeA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.275 22.472 2 0.11412 7122 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 49.358 0 1891000000 173230000 175920000 178640000 8762400 7684200 8034700 291220000 292040000 308740000 6855300 6175600 3384500 90193000 77260000 76849000 0 0 0 55368000 56154000 69591000 1872000 1454300 1580200 12680 81 12357 238522;238523;238524;238525;238526;238527;238528;238529;238530;238531;238532;238533;238534;238535;238536;238537;238538;238539;238540;238541;238542 146298;146299;146300 146298 3 LINFLLRPDVAK Unmodified 1397.8395 0.83947061 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 39.725 38.002 2;3 2.8777E-08 18530 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 208.15 196.98 1614000000 130260000 126800000 121220000 2728600 1943100 0 107300000 80288000 83015000 1187700 0 0 149820000 150680000 184460000 0 0 0 152110000 164300000 157920000 0 0 0 12681 951 12358 238543;238544;238545;238546;238547;238548;238549;238550;238551;238552;238553;238554;238555;238556;238557;238558;238559;238560;238561;238562;238563;238564;238565;238566;238567;238568;238569 146301;146302;146303;146304;146305;146306;146307;146308;146309;146310;146311;146312;146313 146302 13 LINFNCEK Unmodified 1036.5012 0.50116577 1415 P33230 rcbA Double-strand break reduction protein yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 21.571 21.56 2 0.014992 6744 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 70.919 66.163 10205000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4496600 2864500 2843900 0 0 0 0 0 0 12682 1415 12359 238570;238571;238572 146314 146314 1 LINGSIER Unmodified 900.50288 0.50288033 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 2 2 2 1 2 2 2 1 1 1 16.52 17.222 2 0.0011803 5630 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.01 66.315 224070000 4249900 15669000 15208000 701320 418820 538850 24928000 26173000 48557000 1946000 0 0 17582000 16732000 18929000 0 0 0 12163000 9282000 10988000 0 0 0 12683 520 12360 238573;238574;238575;238576;238577;238578;238579;238580;238581;238582;238583;238584;238585;238586;238587;238588;238589;238590;238591;238592;238593;238594 146315;146316;146317;146318;146319;146320;146321 146315 2 LINKEDAVVVDLR Unmodified 1482.8406 0.84059282 981 P0AG27 yibN Uncharacterized protein YibN yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 2 2 2 2 2 2 28.006 26.617 2;3 1.7276E-12 12097 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 197.3 189.08 671760000 44713000 31339000 32991000 21953000 23787000 19463000 13632000 15791000 14314000 27703000 44881000 29872000 14143000 9307200 8864100 0 0 0 79256000 72171000 69232000 31782000 31502000 35067000 12684 981 12361 238595;238596;238597;238598;238599;238600;238601;238602;238603;238604;238605;238606;238607;238608;238609;238610;238611;238612;238613;238614;238615;238616;238617;238618;238619;238620;238621;238622;238623;238624;238625;238626;238627;238628;238629;238630;238631 146322;146323;146324;146325;146326;146327;146328;146329;146330;146331;146332;146333;146334;146335;146336;146337;146338;146339;146340;146341;146342;146343;146344;146345;146346;146347;146348;146349;146350;146351;146352;146353;146354;146355 146342 32 LINQAVEIVR Unmodified 1153.6819 0.68190733 962 P0AFR4 yciO Uncharacterized protein YciO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.413 28.015 2 7.1331E-05 12982 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.12 115.88 1064900000 182940000 174650000 175730000 9902300 8088600 9510100 50930000 50637000 47578000 0 0 1222200 48765000 52559000 49173000 0 0 0 60733000 72889000 63277000 2562600 1649500 2098300 12685 962 12362 238632;238633;238634;238635;238636;238637;238638;238639;238640;238641;238642;238643;238644;238645;238646;238647;238648;238649;238650 146356;146357;146358;146359;146360;146361;146362;146363;146364;146365;146366;146367;146368;146369;146370 146365 15 LINSVQNYAWGSK Unmodified 1478.7518 0.75177781 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32 30.661 2 1.1086E-08 14496 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.41 155.67 945770000 58322000 54301000 55385000 0 0 0 100890000 110540000 111910000 0 0 0 79613000 73937000 74194000 0 0 0 75786000 75318000 75571000 0 0 0 12686 56 12363 238651;238652;238653;238654;238655;238656;238657;238658;238659;238660;238661;238662 146371;146372;146373;146374;146375;146376;146377;146378;146379;146380;146381;146382 146374 12 LINWSLTDTTTR Unmodified 1419.7358 0.73579339 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 39.825 37.763 2 7.5969E-06 13293 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 131.82 126.04 92262000 0 0 0 13073000 13028000 11900000 3386400 5248500 3932000 6561800 4265200 4959200 0 2009500 0 0 0 0 2845000 0 0 6642100 7308600 7102700 12687 1899 12364 238663;238664;238665;238666;238667;238668;238669;238670;238671;238672;238673;238674;238675;238676;238677 146383;146384;146385;146386;146387;146388;146389;146390;146391 146390 9 LINYLVEEFK Unmodified 1266.686 0.68598966 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.809 44.181 2 3.2507E-05 21809 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 161.92 153.05 2799200000 238520000 232120000 209720000 3874700 1397400 3030900 270440000 265210000 281550000 15155000 16387000 16764000 193210000 167600000 169880000 0 0 0 234580000 245990000 225170000 4973700 0 3658400 12688 293 12365 238678;238679;238680;238681;238682;238683;238684;238685;238686;238687;238688;238689;238690;238691;238692;238693;238694;238695;238696;238697 146392;146393;146394;146395;146396;146397;146398;146399;146400;146401;146402;146403;146404;146405;146406 146397 15 LINYLVEEFKK Unmodified 1394.781 0.78095267 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 2 3 3 4 1 3 2 3 2 3 3 2 1 4 3 3 3 3 2 37.062 35.423 2;3 2.1623E-07 17404 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 167.97 164.08 12594000000 930960000 796500000 924690000 98374000 105230000 95898000 1109400000 1139600000 1175200000 490510000 452100000 474450000 523210000 623620000 582930000 44541000 58730000 41974000 922820000 792410000 741600000 161230000 151830000 155890000 12689 293 12366 238698;238699;238700;238701;238702;238703;238704;238705;238706;238707;238708;238709;238710;238711;238712;238713;238714;238715;238716;238717;238718;238719;238720;238721;238722;238723;238724;238725;238726;238727;238728;238729;238730;238731;238732;238733;238734;238735;238736;238737;238738;238739;238740;238741;238742;238743;238744;238745;238746;238747;238748;238749;238750;238751;238752;238753;238754;238755;238756;238757;238758;238759;238760 146407;146408;146409;146410;146411;146412;146413;146414;146415;146416;146417;146418;146419;146420;146421;146422;146423;146424;146425;146426;146427;146428;146429;146430;146431;146432;146433;146434;146435;146436;146437;146438;146439;146440;146441;146442;146443;146444;146445;146446;146447;146448;146449;146450;146451;146452;146453;146454;146455;146456;146457;146458;146459;146460;146461;146462;146463 146421 50 LIPAADISEQISTAGK Unmodified 1612.8672 0.8672015 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 37.361 35.657 2;3 6.4179E-10 17625 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.42 169.36 2858200000 75278000 67607000 61582000 2268700 2444300 2329600 309770000 306100000 315620000 119250000 108210000 120560000 161930000 160130000 155160000 25080000 33385000 22977000 207500000 229010000 241380000 49064000 40084000 41476000 12690 30 12367 238761;238762;238763;238764;238765;238766;238767;238768;238769;238770;238771;238772;238773;238774;238775;238776;238777;238778;238779;238780;238781;238782;238783;238784;238785;238786;238787;238788;238789;238790;238791;238792;238793;238794;238795;238796;238797;238798;238799;238800;238801 146464;146465;146466;146467;146468;146469;146470;146471;146472;146473;146474;146475;146476;146477;146478;146479;146480;146481;146482;146483;146484;146485;146486;146487;146488;146489;146490;146491;146492;146493;146494;146495;146496;146497 146476 33 LIPAAVEGGLHQIETASGAVLK Unmodified 2173.2107 0.21066806 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 4 3 1 1 1 3 3 3 1 1 1 3 3 3 1 1 3 3 3 1 48.697 47.399 2;3;4 8.4575E-22 23105 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 195.89 178.19 5189100000 247110000 275750000 218330000 2289700 1869500 3352100 657250000 701950000 704290000 7977500 7278500 7172600 372480000 377160000 344370000 0 3075600 3281200 420270000 438670000 391720000 3494800 0 0 12691 1437 12368 238802;238803;238804;238805;238806;238807;238808;238809;238810;238811;238812;238813;238814;238815;238816;238817;238818;238819;238820;238821;238822;238823;238824;238825;238826;238827;238828;238829;238830;238831;238832;238833;238834;238835;238836;238837;238838;238839;238840;238841;238842;238843;238844;238845;238846;238847;238848 146498;146499;146500;146501;146502;146503;146504;146505;146506;146507;146508;146509;146510;146511;146512;146513;146514;146515;146516;146517;146518;146519;146520;146521;146522;146523;146524;146525;146526;146527;146528;146529;146530;146531;146532;146533;146534 146511 36 LIPADWQSR Unmodified 1084.5665 0.56654322 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.19 26.951 2 0.00024392 11812 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 122.74 111.93 1340400000 107180000 147790000 123030000 0 0 0 122540000 105940000 118730000 0 0 0 95752000 96563000 85035000 0 0 0 109510000 120240000 108050000 0 0 0 12692 1132 12369 238849;238850;238851;238852;238853;238854;238855;238856;238857;238858;238859;238860 146535;146536;146537;146538;146539;146540;146541;146542;146543;146544;146545;146546 146544 12 LIPAGTGYAYHQDR Unmodified 1560.7685 0.76849051 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 4 4 3 2 2 2 5 7 7 2 2 3 3 4 4 19.961 20.074 2;3;4 1.0629E-10 6105 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 175.15 169.05 42942000000 478570000 431070000 410300000 35472000 34258000 35668000 398380000 401870000 344540000 3097800000 2733300000 2713000000 351090000 419590000 353670000 7625100000 5613200000 5957100000 529250000 581220000 519210000 3359300000 3179500000 3339800000 12693 458 12370 238861;238862;238863;238864;238865;238866;238867;238868;238869;238870;238871;238872;238873;238874;238875;238876;238877;238878;238879;238880;238881;238882;238883;238884;238885;238886;238887;238888;238889;238890;238891;238892;238893;238894;238895;238896;238897;238898;238899;238900;238901;238902;238903;238904;238905;238906;238907;238908;238909;238910;238911;238912;238913;238914;238915;238916;238917;238918;238919;238920;238921;238922;238923;238924;238925;238926;238927;238928;238929;238930;238931;238932;238933 146547;146548;146549;146550;146551;146552;146553;146554;146555;146556;146557;146558;146559;146560;146561;146562;146563;146564;146565;146566;146567;146568;146569;146570;146571;146572;146573;146574;146575;146576;146577;146578;146579;146580;146581;146582;146583;146584;146585;146586;146587;146588;146589;146590;146591;146592;146593;146594;146595;146596;146597;146598;146599;146600;146601;146602;146603;146604;146605;146606;146607;146608;146609;146610;146611;146612;146613;146614;146615;146616;146617;146618;146619 146577 71 LIPEELVPVQR Unmodified 1291.75 0.7499869 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 39.127 37.44 2;3 5.7352E-05 18198 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 97.456 89.777 712790000 118590000 116010000 109970000 729870 852600 655470 80940000 75337000 72391000 0 0 0 13886000 15370000 14556000 0 0 0 31931000 31319000 30250000 0 0 0 12694 1174 12371 238934;238935;238936;238937;238938;238939;238940;238941;238942;238943;238944;238945;238946;238947;238948;238949;238950;238951;238952;238953;238954;238955;238956;238957;238958;238959 146620;146621;146622;146623;146624;146625;146626;146627;146628;146629;146630;146631;146632;146633;146634 146629 3 LIPITSQNR Unmodified 1040.5978 0.59784335 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.842 20.332 2 4.8267E-06 7682 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 173.88 125.37 1312400000 268170000 293050000 310420000 0 0 0 61975000 55098000 47794000 0 0 0 36317000 39241000 37666000 0 0 0 55864000 53034000 53816000 0 0 0 12695 1501 12372 238960;238961;238962;238963;238964;238965;238966;238967;238968;238969;238970;238971 146635;146636;146637;146638;146639;146640;146641;146642 146639 8 LIPLMILNALAGK Unmodified 1365.8418 0.84177879 1308 P27830 rffG dTDP-glucose 4,6-dehydratase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.572 54.099 2 3.0391E-05 25703 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 104.2 103.67 268710000 12815000 11924000 11930000 0 0 0 18568000 17943000 15529000 0 0 0 26987000 26171000 25978000 0 0 0 38358000 32483000 30023000 0 0 0 12696 1308 12373 238972;238973;238974;238975;238976;238977;238978;238979;238980;238981;238982;238983 146643;146644;146645 146644 3 LIPLTTAEQVGK Unmodified 1268.734 0.73400248 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 31.247 29.906 2 3.2534E-06 13813 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.57 130.26 2253500000 292220000 260960000 254580000 0 0 0 214460000 205370000 215660000 0 0 0 118520000 113840000 103280000 0 0 0 152390000 154360000 167900000 0 0 0 12697 313 12374 238984;238985;238986;238987;238988;238989;238990;238991;238992;238993;238994;238995;238996 146646;146647;146648;146649;146650;146651;146652;146653;146654;146655;146656;146657 146654 12 LIPLVILNALEGK Unmodified 1391.8752 0.87518741 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.371 53.929 2 1.5596E-12 25585 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 194.06 194.06 3135000000 106060000 99021000 99676000 3145000 1815200 1695700 277240000 256150000 238990000 0 0 0 298730000 257440000 264710000 0 0 0 386470000 419620000 424250000 0 0 0 12698 1496 12375 238997;238998;238999;239000;239001;239002;239003;239004;239005;239006;239007;239008;239009;239010;239011 146658;146659;146660;146661;146662;146663;146664;146665;146666;146667;146668;146669 146668 12 LIPPSQTFPR Unmodified 1154.6448 0.64479354 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 27.337 26.189 2 4.0933E-05 12147 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 140.09 134.17 435840000 74497000 80305000 72067000 0 0 0 50929000 47444000 50787000 0 0 0 8167900 6631400 7780000 0 0 0 11959000 12005000 13269000 0 0 0 12699 401 12376 239012;239013;239014;239015;239016;239017;239018;239019;239020;239021;239022;239023;239024 146670;146671;146672;146673;146674;146675;146676;146677;146678;146679;146680;146681;146682;146683;146684 146672 14 LIQANPALSK Unmodified 1053.6182 0.61824444 560 P0A9V5 yiaG Uncharacterized HTH-type transcriptional regulator YiaG yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 19.258 19.191 2 0.0012801 6106 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 85.67 49.275 15373000 0 0 0 0 0 0 2970800 0 2977800 3433600 2724700 3265800 0 0 0 0 0 0 0 0 0 0 0 0 12700 560 12377 239025;239026;239027;239028;239029 146685;146686;146687 146685 3 LIQESILR Unmodified 970.58113 0.58113065 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.369 26.222 2 0.0087981 12333 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.906 48.906 1133400000 19962000 18304000 15499000 0 0 0 137970000 137740000 141240000 0 0 0 100610000 112110000 95527000 0 0 0 130240000 118340000 105820000 0 0 0 12701 1323 12378 239030;239031;239032;239033;239034;239035;239036;239037;239038;239039;239040;239041 146688;146689;146690;146691;146692;146693 146688 0 LIQLMNETVDGDYQTFK Oxidation (M) 2029.9667 0.96665755 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 12 9 12 6 2 2 6 4 5 1 5 4 1 3 11 11 11 40.741 38.811 2;3 1.6165E-39 15171 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 257.79 255.96 1287500000 12161000 0 5524600 219000000 115630000 185510000 33014000 12861000 9006300 15735000 14873000 13196000 3765000 13992000 0 0 0 0 20905000 4896100 13476000 208910000 185500000 199550000 12702 939 12379 239042;239043;239044;239045;239046;239047;239048;239049;239050;239051;239052;239053;239054;239055;239056;239057;239058;239059;239060;239061;239062;239063;239064;239065;239066;239067;239068;239069;239070;239071;239072;239073;239074;239075;239076;239077;239078;239079;239080;239081;239082;239083;239084;239085;239086;239087;239088;239089;239090;239091;239092;239093;239094;239095;239096;239097;239098;239099;239100;239101;239102;239103;239104;239105;239106;239107;239108;239109;239110;239111;239112;239113;239114;239115;239116;239117;239118;239119;239120;239121;239122;239123;239124;239125;239126;239127;239128;239129;239130;239131;239132;239133;239134;239135;239136;239137;239138;239139;239140;239141;239142;239143;239144;239145;239146;239147;239148;239149 146694;146695;146696;146697;146698;146699;146700;146701;146702;146703;146704;146705;146706;146707;146708;146709;146710;146711;146712;146713;146714;146715;146716;146717;146718;146719;146720;146721;146722;146723;146724;146725;146726;146727;146728;146729;146730;146731;146732;146733;146734;146735;146736;146737;146738;146739;146740;146741;146742;146743;146744;146745;146746;146747;146748;146749;146750;146751;146752;146753;146754;146755;146756;146757;146758;146759;146760;146761;146762;146763;146764;146765;146766;146767;146768;146769;146770;146771 146720 437 74 LIQLMNETVDGDYQTFK Unmodified 2013.9717 0.97174292 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 7 8 10 3 3 3 1 2 2 3 2 1 1 3 2 3 4 3 3 46.613 45.211 2;3 6.8107E-50 21313 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 281.73 271.12 35286000000 766320000 727340000 666630000 4406900000 4400100000 4369900000 963880000 896220000 863350000 0 0 292010000 641810000 649330000 599300000 127270000 73714000 71669000 978660000 1039400000 943750000 4074200000 3813200000 3921400000 12703 939 12379 239150;239151;239152;239153;239154;239155;239156;239157;239158;239159;239160;239161;239162;239163;239164;239165;239166;239167;239168;239169;239170;239171;239172;239173;239174;239175;239176;239177;239178;239179;239180;239181;239182;239183;239184;239185;239186;239187;239188;239189;239190;239191;239192;239193;239194;239195;239196;239197;239198;239199;239200;239201;239202;239203;239204;239205;239206;239207;239208;239209;239210;239211;239212;239213;239214;239215;239216;239217;239218;239219;239220 146772;146773;146774;146775;146776;146777;146778;146779;146780;146781;146782;146783;146784;146785;146786;146787;146788;146789;146790;146791;146792;146793;146794;146795;146796;146797;146798;146799;146800;146801;146802;146803;146804;146805;146806;146807;146808;146809;146810;146811;146812;146813;146814;146815;146816;146817;146818;146819;146820;146821;146822;146823;146824;146825;146826;146827;146828;146829;146830;146831;146832;146833;146834;146835;146836;146837;146838;146839;146840;146841;146842;146843;146844;146845;146846;146847;146848;146849;146850;146851 146800 75 LISADGK Unmodified 702.3912 0.39120462 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By MS/MS 1 13.346 13.502 2 0.006288 3350 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 91.584 46.973 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12704 994 12380 239221 146852 146852 1 LISADGKPVSPTEENFANAAK Unmodified 2158.0906 0.090612506 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 25.974 24.874 2;3 3.217E-35 11324 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 276.99 267.94 12490000000 65873000 60288000 59369000 10247000 9367300 9303000 1357600000 1394400000 1360100000 15558000 18769000 17639000 1350300000 1313400000 1268800000 6385400 7900300 8220300 1353100000 1416400000 1294400000 32395000 25800000 34997000 12705 994 12381 239222;239223;239224;239225;239226;239227;239228;239229;239230;239231;239232;239233;239234;239235;239236;239237;239238;239239;239240;239241;239242;239243;239244;239245;239246;239247;239248;239249;239250;239251;239252;239253;239254;239255;239256;239257;239258 146853;146854;146855;146856;146857;146858;146859;146860;146861;146862;146863;146864;146865;146866;146867;146868;146869;146870;146871;146872;146873;146874;146875;146876;146877;146878;146879;146880;146881;146882;146883 146862 31 LISAGTTLPEDVADR Unmodified 1556.8046 0.80460124 387 P0A812 ruvB Holliday junction ATP-dependent DNA helicase RuvB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.949 31.333 2 6.8183E-09 14755 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.1 138.52 296640000 33913000 23657000 30952000 1269800 1507900 1293300 19440000 18541000 21614000 7384000 6641400 7578000 17140000 16010000 18300000 0 0 0 21853000 23316000 26231000 0 0 0 12706 387 12382 239259;239260;239261;239262;239263;239264;239265;239266;239267;239268;239269;239270;239271;239272;239273;239274;239275;239276 146884;146885;146886;146887;146888;146889;146890;146891;146892 146891 9 LISAVMGGR Unmodified 902.50077 0.50077184 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.928 22.358 2 8.7679E-05 7720 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 139.31 61.407 456850000 15440000 19351000 12559000 0 0 0 31256000 29174000 32854000 28228000 0 26158000 31188000 30690000 32981000 5703300 4628100 3998100 41163000 43029000 37017000 16284000 15150000 0 12707 844 12383 239277;239278;239279;239280;239281;239282;239283;239284;239285;239286;239287;239288;239289;239290;239291;239292;239293;239294;239295;239296;239297 146893;146894;146895;146896;146897;146898;146899;146900;146901 146894 9 LISEEIELSR Unmodified 1187.6398 0.63976774 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 31.267 30.034 2 0.00061 14077 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 91.867 43.443 53072000 0 0 0 0 0 0 0 0 0 0 0 0 8136700 8357400 7605000 0 0 0 11015000 9504400 8453400 0 0 0 12708 1459 12384 239298;239299;239300;239301;239302;239303 146902;146903;146904;146905;146906 146903 5 LISEFYPEDSGLFSPLLLNVVK Unmodified 2479.325 0.32502912 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.761 54.288 2;3 2.2608E-21 26000 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 161.21 154.32 933100000 85124000 63716000 63282000 0 0 0 88116000 68151000 75646000 0 0 0 86708000 92878000 95456000 0 0 0 72941000 75967000 65112000 0 0 0 12709 56 12385 239304;239305;239306;239307;239308;239309;239310;239311;239312;239313;239314;239315;239316;239317;239318;239319;239320;239321;239322;239323;239324;239325;239326;239327 146907;146908;146909;146910;146911;146912;146913;146914;146915;146916;146917;146918;146919;146920;146921;146922 146917 16 LISFDIAK Unmodified 905.52222 0.52221879 1656 P63201 gadW HTH-type transcriptional regulator GadW yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 36.239 34.811 2 0.011257 12531 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 77.058 43.319 27404000 0 0 0 0 0 0 3298000 2450700 0 3534100 2911900 2424400 1255700 0 1246100 4912400 2823500 2547300 0 0 0 0 0 0 12710 1656 12386 239328;239329;239330;239331;239332;239333;239334;239335;239336;239337 146923;146924;146925;146926;146927;146928 146923 6 LISFDIAKR Unmodified 1061.6233 0.62332982 1656 P63201 gadW HTH-type transcriptional regulator GadW yes yes 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 28.151 27.042 3 0.028553 8564 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 44.203 38.89 7265200 0 0 0 0 0 0 0 0 0 1354900 0 921390 0 0 0 0 2152500 2836400 0 0 0 0 0 0 12711 1656 12387 239338;239339;239340;239341 146929 146929 1 LISNDLR Unmodified 829.46577 0.46576654 1080 P12994 ybhB UPF0098 protein YbhB yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 16.889 17.578 2 0.072193 6111 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.981 23.876 196420000 1776200 99686000 0 0 0 0 56496000 0 0 0 0 0 0 0 0 0 0 0 0 38460000 0 0 0 0 12712 1080 12388 239342;239343;239344;239345 146930 146930 1 LISVGPDNPK Unmodified 1038.571 0.5709599 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 19.269 19.766 2 5.2218E-05 7651 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135 125.6 435340000 38836000 34626000 35594000 381830 0 0 0 70193000 68930000 0 0 0 47053000 0 0 0 0 0 69428000 70301000 0 0 0 0 12713 1421 12389 239346;239347;239348;239349;239350;239351;239352;239353;239354 146931;146932;146933 146931 3 LISVLRPEEVVLDAEDADITDK Unmodified 2439.2745 0.27445011 1030 P0AGM7 uraA Uracil permease yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 49.695 48.356 3 8.4652E-05 23676 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.369 65.72 99550000 14964000 13713000 11862000 0 1806200 1072100 0 0 5370700 0 0 0 6803200 7696000 7333000 0 0 0 0 14405000 14524000 0 0 0 12714 1030 12390 239355;239356;239357;239358;239359;239360;239361;239362;239363;239364;239365 146934;146935;146936;146937;146938 146935 0 LISVVLGAK Unmodified 898.58515 0.5851534 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.767 30.177 2 0.0028277 14439 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 83.753 46.659 228410000 7605000 8126900 6785500 0 3939500 4892500 27667000 25265000 23775000 21197000 15130000 13030000 9177500 8799100 10192000 0 0 0 12339000 11482000 10582000 4303400 4119800 0 12715 189 12391 239366;239367;239368;239369;239370;239371;239372;239373;239374;239375;239376;239377;239378;239379;239380;239381;239382;239383;239384 146939;146940;146941;146942;146943;146944;146945;146946;146947;146948;146949 146943 11 LISYSTR Unmodified 838.45487 0.45486751 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.455 16.265 2 0.00097355 5216 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.92 121.25 963940000 69374000 63828000 57298000 1052500 829020 893130 120000000 123090000 106940000 0 0 0 78044000 67708000 70302000 0 0 0 76007000 67695000 60251000 0 0 621480 12716 421 12392 239385;239386;239387;239388;239389;239390;239391;239392;239393;239394;239395;239396;239397;239398;239399;239400 146950;146951;146952;146953;146954;146955;146956;146957;146958 146957 9 LITATENGNQLMQQNIK Unmodified 1914.9833 0.98331066 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 1 2 30.653 28.755 2;3 4.7008E-14 9811 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 213.34 200.07 58209000 0 0 0 11729000 9398600 9543100 0 0 0 3951000 2260400 4389900 0 0 0 0 0 0 0 0 0 6684600 3120600 7131300 12717 1899 12393 239401;239402;239403;239404;239405;239406;239407;239408;239409;239410;239411;239412;239413;239414;239415;239416 146959;146960;146961;146962;146963 146961 5 LITCASEVGIWDYQPDEVVEK Unmodified 2450.1675 0.1675422 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 49.693 48.286 2;3 2.0595E-21 23719 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 224.34 221.68 255760000 55461000 42052000 41785000 0 0 0 17172000 19726000 23861000 0 0 0 13732000 14849000 12133000 0 0 0 6797300 0 8188400 0 0 0 12718 218 12394 239417;239418;239419;239420;239421;239422;239423;239424;239425;239426;239427;239428;239429;239430;239431;239432;239433;239434;239435;239436 146964;146965;146966;146967 146964 3 LITDGLAVFEK Unmodified 1204.6703 0.67033959 846 P0AEC3 arcB Aerobic respiration control sensor protein ArcB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.835 44.191 2 0.00016301 21662 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.48 109.28 729020000 78028000 71317000 61396000 5566100 5777800 5082900 65821000 65337000 57673000 9625400 8719200 7986600 41606000 41100000 38936000 0 0 0 50808000 54503000 45070000 4027400 5026900 5607100 12719 846 12395 239437;239438;239439;239440;239441;239442;239443;239444;239445;239446;239447;239448;239449;239450;239451;239452;239453;239454;239455;239456;239457 146968;146969;146970;146971;146972;146973;146974;146975;146976;146977;146978;146979;146980;146981;146982;146983;146984;146985;146986;146987 146982 20 LITFFDK Unmodified 882.48511 0.485105 1862 P76445 lpxT Lipid A 1-diphosphate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.604 36.737 2 0.0028071 17667 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 110.61 96.836 116120000 2169600 2023300 2231600 228910 337470 0 11217000 8721000 8383300 2226300 1980800 2189900 9440800 9594300 8410000 0 0 0 16801000 13200000 11745000 1902800 1668200 1651700 12720 1862 12396 239458;239459;239460;239461;239462;239463;239464;239465;239466;239467;239468;239469;239470;239471;239472;239473;239474;239475;239476;239477 146988;146989;146990;146991;146992;146993;146994;146995;146996;146997;146998 146995 11 LITIAVPR Unmodified 881.56984 0.56983769 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 1 1 1 34.7 33.183 2 6.9182E-05 10957 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 167.25 53.23 8080400000 972780000 836640000 699810000 80500000 75623000 63015000 416480000 355080000 404190000 181930000 182990000 192670000 331440000 261010000 253720000 142360000 88945000 99672000 708980000 707990000 549900000 174110000 146560000 154060000 12721 1644 12397 239478;239479;239480;239481;239482;239483;239484;239485;239486;239487;239488;239489;239490;239491;239492;239493;239494;239495;239496;239497;239498;239499;239500;239501;239502;239503;239504;239505;239506;239507;239508;239509;239510 146999;147000;147001;147002;147003;147004;147005;147006;147007;147008;147009;147010;147011;147012;147013;147014;147015;147016;147017;147018;147019;147020;147021;147022;147023;147024;147025;147026;147027;147028;147029;147030;147031;147032;147033;147034;147035 146999 37 LITLLPNWIDK Unmodified 1324.7755 0.77547336 1871 P76550 yffS Uncharacterized protein YffS yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 53.432 52.002 2 0.00015967 25496 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 109.66 64.503 169180000 23241000 20804000 22707000 0 0 407280 14401000 12683000 11053000 0 0 0 11645000 10975000 10606000 0 0 0 9607000 10385000 10666000 0 0 0 12722 1871 12398 239511;239512;239513;239514;239515;239516;239517;239518;239519;239520;239521;239522;239523 147036;147037;147038;147039 147036 4 LITSSSADGK Unmodified 977.50294 0.50293991 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 1 1 1 11.659 12.473 2 0.0016029 3396 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 83.783 63.228 313080000 42933000 32696000 30648000 0 0 486040 38279000 40201000 40958000 0 0 0 17594000 13168000 13534000 0 0 0 13599000 14770000 14215000 0 0 0 12723 88 12399 239524;239525;239526;239527;239528;239529;239530;239531;239532;239533;239534;239535;239536;239537;239538;239539;239540;239541;239542 147040;147041;147042 147042 3 LIVAVNSDASTK Unmodified 1216.6663 0.66631685 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.659 21.594 2 7.974E-12 8714 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 190.88 178.31 443640000 36318000 31810000 27579000 0 0 0 29992000 32463000 27952000 0 1932700 1786400 42291000 39951000 36316000 0 0 0 45942000 41151000 46680000 0 678110 799340 12724 1880 12400 239543;239544;239545;239546;239547;239548;239549;239550;239551;239552;239553;239554;239555;239556;239557;239558 147043;147044;147045;147046;147047;147048;147049;147050;147051;147052;147053;147054 147050 12 LIVGLANPGAEYAATR Unmodified 1614.873 0.87295558 332 P0A7D1 pth Peptidyl-tRNA hydrolase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.132 36.456 2 1.5958E-08 17565 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 127.17 127.17 417190000 49304000 43359000 42188000 347100 0 0 30823000 26079000 26197000 0 0 0 34746000 27020000 31162000 0 0 0 37354000 31548000 37059000 0 0 0 12725 332 12401 239559;239560;239561;239562;239563;239564;239565;239566;239567;239568;239569;239570;239571 147055;147056;147057;147058;147059;147060 147056 4 LIVGPGAK Unmodified 753.47487 0.47487467 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.427 17.208 2 0.045214 6104 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.788 24.201 424100000 15427000 21868000 15766000 0 0 0 44448000 41031000 39779000 0 0 0 39950000 34718000 38742000 0 0 0 43821000 45896000 42657000 0 0 0 12726 509 12402 239572;239573;239574;239575;239576;239577;239578;239579;239580;239581;239582;239583 147061;147062;147063;147064;147065;147066;147067;147068;147069;147070;147071;147072 147067 12 LIVHHNLPDLMYR Unmodified 1619.8606 0.86061675 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 3 3 3 1 3 3 3 27.197 25.934 2;3;4 3.493E-07 11228 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 117.86 116.28 588230000 3412600 10018000 4101500 692050 0 0 135540000 124950000 142790000 0 1543100 0 38082000 64198000 62908000 0 0 0 0 0 0 0 0 0 12727 520 12403 239584;239585;239586;239587;239588;239589;239590;239591;239592;239593;239594;239595;239596;239597;239598;239599;239600;239601;239602;239603;239604;239605;239606;239607 147073;147074;147075;147076;147077;147078;147079;147080;147081;147082;147083;147084;147085 147082 13 LIVIDPR Unmodified 824.51199 0.51198846 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.356 26.978 2 0.013597 9855 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 83.614 79.761 135550000 9824300 9080100 7186300 3693900 3510100 4644800 9082200 10392000 7866900 5088100 4226200 3708000 0 7291800 7346500 1692500 0 0 10123000 11049000 9562200 3668100 2949200 3562200 12728 1393 12404 239608;239609;239610;239611;239612;239613;239614;239615;239616;239617;239618;239619;239620;239621;239622;239623;239624;239625;239626;239627;239628 147086;147087;147088;147089;147090;147091;147092;147093;147094;147095;147096;147097;147098;147099;147100;147101;147102 147092 17 LIVIEMNPR Unmodified 1083.6111 0.61105057 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 34.683 33.227 2;3 0.00010116 15907 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 135.84 107.74 1399600000 323520000 302980000 261700000 1729900 1435700 1243700 5166100 7337200 3727600 0 0 0 33799000 33734000 32247000 2151300 0 0 112010000 134180000 124720000 6100700 5993000 5802100 12729 65 12405 239629;239630;239631;239632;239633;239634;239635;239636;239637;239638;239639;239640;239641;239642;239643;239644;239645;239646;239647;239648;239649;239650;239651 147103;147104;147105;147106;147107;147108;147109;147110;147111;147112;147113;147114;147115;147116 147108 13 LIVKPNAVNGELSEDDIQLFPLLR Unmodified 2692.48 0.47996663 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 2 2 1 1 1 2 2 2 53.315 51.871 2;3;4 1.3511E-41 25620 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.89 163.64 1516600000 422160000 341490000 336560000 3034900 3095800 3359400 91484000 70785000 76916000 0 0 0 22143000 20153000 20307000 0 0 0 37720000 28193000 39222000 0 0 0 12730 703 12406 239652;239653;239654;239655;239656;239657;239658;239659;239660;239661;239662;239663;239664;239665;239666;239667;239668;239669;239670;239671;239672;239673;239674;239675;239676;239677;239678;239679 147117;147118;147119;147120;147121;147122;147123;147124;147125;147126;147127;147128 147124 7 LIVPQWPQPK Unmodified 1204.6968 0.69682911 1430 P33644 yfiH Laccase domain protein YfiH yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.935 38.262 2 0.006702 17984 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 66.258 65.261 170520000 20720000 17765000 16435000 0 0 0 12197000 12914000 15643000 0 0 0 11927000 8685700 10637000 0 0 0 14708000 15902000 12988000 0 0 0 12731 1430 12407 239680;239681;239682;239683;239684;239685;239686;239687;239688;239689;239690;239691 147129;147130;147131;147132;147133;147134;147135;147136;147137;147138 147136 5 LIVVTGLSGSGK Unmodified 1129.6707 0.67067394 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.435 29.325 2 0.00034407 13743 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.79 97.826 180870000 22647000 16068000 16648000 0 352340 0 14644000 12696000 13989000 0 0 0 11495000 10151000 10159000 6398500 5579800 6122400 10365000 13525000 10034000 0 0 0 12732 222 12408 239692;239693;239694;239695;239696;239697;239698;239699;239700;239701;239702;239703;239704;239705;239706;239707 147139;147140;147141;147142;147143;147144 147140 3 LIVVTHQ Unmodified 808.48069 0.48068833 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.321 18.677 2 0.0026472 5470 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 111.28 49.281 13780000000 50193000 49464000 44271000 2005000 2284200 2675200 60429000 55949000 60218000 1541800000 1270100000 1226700000 63869000 59277000 65236000 2390300000 1898300000 2064100000 97129000 87005000 81253000 969880000 828630000 809380000 12733 1616 12409 239708;239709;239710;239711;239712;239713;239714;239715;239716;239717;239718;239719;239720;239721;239722;239723;239724;239725;239726;239727;239728;239729;239730;239731 147145;147146;147147;147148;147149;147150;147151;147152;147153;147154;147155;147156;147157;147158;147159;147160;147161;147162;147163 147145 19 LIWLTPAPANNTWTIAVR Unmodified 2036.1207 0.12073084 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 54.437 53.023 3 0.07362 25869 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 37.687 36.53 37645000 13236000 13884000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3846500 4243700 2434900 0 0 0 12734 1420 12410 239732;239733;239734;239735;239736 147164 147164 0 LIYLGAGTSGR Unmodified 1106.6084 0.60840804 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.25 26.103 2 9.0649E-05 11691 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.64 90.902 178870000 13143000 14178000 12922000 0 0 0 17215000 15718000 16757000 0 0 0 13621000 14273000 12543000 0 0 0 16721000 18016000 13765000 0 0 0 12735 1867 12411 239737;239738;239739;239740;239741;239742;239743;239744;239745;239746;239747;239748 147165;147166;147167;147168;147169;147170;147171;147172;147173 147172 9 LIYTASDLK Unmodified 1022.5648 0.56481189 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.506 24.344 2 0.0005527 10808 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.29 99.624 11055000000 992770000 1123400000 1001400000 4742200 5569300 5099200 1011900000 961770000 913760000 0 2633900 1927800 1008400000 934260000 750100000 0 0 0 746170000 779700000 806670000 2666000 0 1778800 12736 271 12412 239749;239750;239751;239752;239753;239754;239755;239756;239757;239758;239759;239760;239761;239762;239763;239764;239765;239766;239767 147174;147175;147176;147177;147178;147179;147180;147181;147182;147183;147184;147185;147186;147187;147188;147189 147179 16 LKAEDMAAANAMASHLR Unmodified 1798.8818 0.88182248 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 2 2 2 2 2 2 2 1 26.154 25.024 3;4 1.0521E-10 11276 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 141.13 139.45 855640000 79079000 78103000 70663000 394280 389960 0 37422000 33141000 64520000 0 0 0 68075000 75769000 61579000 0 0 0 100580000 95979000 89295000 0 0 652160 12737 1188 12413 239768;239769;239770;239771;239772;239773;239774;239775;239776;239777;239778;239779;239780;239781;239782;239783;239784;239785;239786;239787;239788;239789;239790;239791;239792 147190;147191;147192;147193;147194;147195;147196;147197;147198;147199;147200;147201;147202;147203;147204 147193 15 LKAEEGIWMTDVPVPELGHNDLLIK Unmodified 2816.4783 0.47825207 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 50.184 48.765 3;4 1.3708E-07 23868 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.06 108.62 2173400000 238580000 204230000 167340000 0 1203700 0 182670000 180180000 160730000 1419500 0 0 149150000 147030000 148370000 0 0 0 213370000 194290000 184820000 0 0 0 12738 172 12414 239793;239794;239795;239796;239797;239798;239799;239800;239801;239802;239803;239804;239805;239806;239807;239808;239809;239810;239811;239812;239813;239814;239815;239816;239817;239818 147205;147206;147207;147208;147209;147210;147211;147212;147213;147214;147215;147216;147217;147218;147219;147220;147221;147222;147223;147224;147225;147226;147227;147228 147220 24 LKAFDHR Unmodified 885.48209 0.48208531 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 10.905 11.929 2 0.045624 2110 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 70.67 46.697 49020000 0 0 0 0 15444000 0 0 0 0 0 0 0 0 0 15198000 0 0 0 0 18378000 0 0 0 0 12739 365 12415 239819;239820;239821 147229 147229 1 LKAGEVDLLEEELGHLTTLTDVVK Unmodified 2621.4164 0.41636332 160 P07363 cheA Chemotaxis protein CheA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 54.031 52.712 4 1.1891E-06 19321 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 99.11 95.896 21698000 0 0 0 5091300 7167800 9438900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12740 160 12416 239822;239823;239824 147230;147231;147232 147231 3 LKANPQPELLK Unmodified 1249.7394 0.73942221 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 17.306 18.049 2 1.3786E-05 6549 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 149.33 129.03 58038000 18291000 19519000 13985000 2382900 2118900 1740600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12741 318 12417 239825;239826;239827;239828;239829;239830 147233;147234;147235 147234 3 LKAPLDIYLK Unmodified 1172.7169 0.71689585 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.451 31.949 3 0.0036468 15573 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 65.5 61.454 465150000 95133000 79981000 82971000 618830 749290 504570 13075000 12634000 14214000 0 0 0 14516000 16247000 13081000 0 0 0 44444000 39632000 36776000 0 575380 0 12742 1326 12418 239831;239832;239833;239834;239835;239836;239837;239838;239839;239840;239841;239842;239843;239844;239845;239846 147236;147237;147238;147239;147240;147241;147242;147243;147244;147245;147246;147247 147237 12 LKASGMK Unmodified 733.41565 0.41564523 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.0339 8.566 2 0.0095004 1456 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.384 53.033 398770000 28873000 36852000 32305000 0 0 0 0 0 0 20474000 20443000 21953000 40191000 34520000 31441000 0 14229000 12149000 27376000 29867000 27938000 10446000 9710600 0 12743 993 12419 239847;239848;239849;239850;239851;239852;239853;239854;239855;239856;239857;239858;239859;239860;239861;239862;239863 147248;147249;147250;147251;147252;147253;147254;147255;147256;147257;147258;147259 147254 12 LKDGALYDEALK Unmodified 1334.7082 0.70818166 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 1 2 2 2 2 2 2 1 2 2 2 22.975 22.224 2;3 4.0432E-05 8928 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 120.06 102.83 377190000 0 0 0 0 2433600 0 65681000 25958000 22489000 35369000 25179000 30714000 32354000 34398000 32256000 0 5418100 0 22299000 21675000 20961000 0 0 0 12744 500 12420 239864;239865;239866;239867;239868;239869;239870;239871;239872;239873;239874;239875;239876;239877;239878;239879;239880;239881;239882;239883;239884;239885;239886;239887;239888 147260;147261;147262;147263;147264;147265;147266;147267;147268;147269;147270 147270 10 LKDGEDPGYTLYDLSER Unmodified 1969.9269 0.92690122 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 34.589 33.024 2;3 3.0503E-50 15789 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 290.87 288.01 18901000000 2167100000 2040300000 1783800000 5339200 5558800 5455700 4072200000 3989200000 3743100000 32425000 32600000 25664000 174960000 180060000 18774000 3057200 2448000 0 197840000 198750000 222420000 0 0 0 12745 1755;1756 12421 239889;239890;239891;239892;239893;239894;239895;239896;239897;239898;239899;239900;239901;239902;239903;239904;239905;239906;239907;239908;239909;239910;239911;239912;239913;239914;239915;239916;239917;239918;239919;239920;239921;239922;239923 147271;147272;147273;147274;147275;147276;147277;147278;147279;147280;147281;147282;147283;147284;147285;147286;147287;147288;147289;147290;147291;147292;147293;147294;147295;147296;147297 147289 27 LKDGLLAIAEK Unmodified 1169.702 0.70197407 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.321 26.174 2;3 0.00036926 11925 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.9 94.683 1348200000 322690000 303060000 269610000 0 0 0 95812000 88280000 94658000 0 0 0 18423000 19424000 17058000 0 0 0 40968000 41248000 36928000 0 0 0 12746 1194 12422 239924;239925;239926;239927;239928;239929;239930;239931;239932;239933;239934;239935;239936;239937;239938;239939;239940;239941;239942;239943;239944;239945;239946;239947 147298;147299;147300;147301;147302;147303;147304;147305;147306;147307;147308;147309;147310;147311;147312 147305 15 LKDGVGLLPTVLDVVENPK Unmodified 2005.1459 0.14594254 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 1 2 2 1 1 1 2 2 2 1 1 1 51.293 50.086 2;3 3.612E-10 19902 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 126.22 126.22 1465200000 131480000 109480000 121460000 26466000 32213000 20161000 90198000 79398000 79480000 86539000 105580000 102090000 33618000 44196000 35611000 15996000 17435000 26023000 70538000 81449000 80089000 26861000 24543000 24343000 12747 1321 12423 239948;239949;239950;239951;239952;239953;239954;239955;239956;239957;239958;239959;239960;239961;239962;239963;239964;239965;239966;239967;239968;239969;239970;239971;239972;239973;239974;239975;239976;239977;239978;239979;239980;239981;239982;239983;239984;239985;239986 147313;147314;147315;147316;147317;147318;147319;147320;147321;147322;147323;147324;147325;147326;147327;147328;147329;147330;147331;147332;147333;147334;147335;147336;147337;147338 147324 26 LKDKFPQTELFR Unmodified 1520.8351 0.83511351 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 24.562 23.587 3;4 0.00065942 9957 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 76.326 75.666 398500000 39701000 38212000 37402000 0 0 0 36451000 32382000 27995000 0 0 0 28787000 19919000 19662000 0 0 0 42682000 36705000 38603000 0 0 0 12748 1132 12424 239987;239988;239989;239990;239991;239992;239993;239994;239995;239996;239997;239998;239999;240000;240001;240002;240003;240004;240005;240006;240007;240008;240009;240010 147339;147340;147341;147342;147343;147344;147345;147346;147347;147348;147349;147350;147351;147352;147353;147354;147355;147356;147357;147358;147359;147360;147361;147362;147363 147359 25 LKDLETQSQDGTFDK Unmodified 1723.8265 0.8264589 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 17.58 18.019 2;3 1.1249E-68 6506 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 330.03 312.22 7144100000 851210000 848780000 837830000 22889000 19142000 20663000 436540000 418690000 377640000 86319000 75147000 64354000 397310000 372300000 378380000 53494000 40053000 39335000 552880000 531580000 566510000 53479000 49270000 50273000 12749 373 12425 240011;240012;240013;240014;240015;240016;240017;240018;240019;240020;240021;240022;240023;240024;240025;240026;240027;240028;240029;240030;240031;240032;240033;240034;240035;240036;240037;240038;240039;240040;240041;240042;240043;240044;240045;240046;240047;240048;240049;240050;240051;240052;240053;240054;240055;240056;240057;240058 147364;147365;147366;147367;147368;147369;147370;147371;147372;147373;147374;147375;147376;147377;147378;147379;147380;147381;147382;147383;147384;147385;147386;147387;147388;147389;147390;147391;147392;147393;147394;147395;147396;147397;147398;147399;147400;147401;147402;147403;147404;147405;147406;147407;147408;147409;147410 147402 47 LKDLETQSQDGTFDKLTK Unmodified 2066.0532 0.053164368 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.458 21.911 3;4 9.0459E-15 7444 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 156.13 151.16 601140000 0 0 0 25077000 21745000 23725000 0 0 0 94450000 78157000 81112000 0 0 0 52398000 42214000 39923000 0 0 0 50148000 51099000 41093000 12750 373 12426 240059;240060;240061;240062;240063;240064;240065;240066;240067;240068;240069;240070;240071;240072;240073;240074;240075;240076;240077;240078;240079;240080;240081;240082 147411;147412;147413;147414;147415;147416;147417;147418;147419;147420;147421;147422;147423;147424;147425;147426;147427;147428;147429;147430;147431;147432;147433 147421 23 LKDLHPELEVIGTNADDAVPHYLR Unmodified 2714.4028 0.40277894 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 37.226 35.552 4;5 2.027E-06 17652 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.946 88.799 657760000 38688000 46240000 37045000 0 0 0 69248000 75403000 57502000 0 0 0 39173000 37212000 38885000 0 0 0 72340000 82199000 63825000 0 0 0 12751 1313 12427 240083;240084;240085;240086;240087;240088;240089;240090;240091;240092;240093;240094;240095;240096;240097;240098;240099;240100;240101;240102;240103;240104;240105;240106 147434;147435;147436;147437;147438;147439 147434 6 LKDLPAITLDGHQVEVCANIGTVR Unmodified 2618.385 0.38502039 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.188 38.63 4 0.0017976 13652 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 59.429 58.396 110300000 0 0 0 8515200 9793800 8498100 0 0 0 13557000 14751000 16965000 0 0 0 3810400 3675400 4712700 0 0 0 9695500 11116000 5204900 12752 192 12428 240107;240108;240109;240110;240111;240112;240113;240114;240115;240116;240117;240118 147440;147441;147442 147440 3 LKDLTNKR Unmodified 986.58728 0.58727866 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 4.8018 5.7893 2 0.0038522 1300 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.9 94.412 41950000 0 0 0 1082400 1141800 1213300 15813000 11598000 11101000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12753 283 12429 240119;240120;240121;240122;240123;240124 147443;147444;147445 147445 3 LKDLVNQDGGENWAK Unmodified 1685.8373 0.83729835 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 22.999 22.329 2;3 5.9962E-22 9796 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 266.97 231.3 1682600000 23893000 24539000 23196000 3987400 3158300 4279100 209040000 214080000 239690000 76725000 43911000 76559000 145220000 129140000 131110000 0 10002000 15140000 86282000 90843000 87920000 16587000 13847000 13402000 12754 25 12430 240125;240126;240127;240128;240129;240130;240131;240132;240133;240134;240135;240136;240137;240138;240139;240140;240141;240142;240143;240144;240145;240146;240147;240148;240149;240150;240151;240152;240153;240154;240155;240156;240157;240158;240159;240160;240161;240162;240163;240164;240165;240166;240167 147446;147447;147448;147449;147450;147451;147452;147453;147454;147455;147456;147457;147458;147459;147460;147461;147462;147463;147464;147465;147466;147467;147468;147469;147470;147471;147472;147473;147474;147475;147476;147477;147478;147479 147456 34 LKDSVPCAVIEGDQQTVNDAAR Unmodified 2385.1594 0.15943713 603 P0AAN3 hypB Hydrogenase isoenzymes nickel incorporation protein HypB yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 27.65 26.34 3 5.7787E-11 12301 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.48 124.53 701780000 20531000 0 0 0 0 0 110680000 105310000 113560000 3789000 0 0 62368000 60892000 55865000 0 0 0 52512000 50687000 65582000 0 0 0 12755 603 12431 240168;240169;240170;240171;240172;240173;240174;240175;240176;240177;240178 147480;147481;147482;147483 147481 4 LKEAAEK Unmodified 787.44397 0.44396847 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 7.7292 8.196 2 0.0026238 1027 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.57 55.527 1175300000 0 0 0 0 0 0 0 0 0 3236800 0 0 150250000 114050000 113250000 16032000 16086000 14292000 206860000 199020000 176390000 59536000 36919000 69378000 12756 293 12432 240179;240180;240181;240182;240183;240184;240185;240186;240187;240188;240189;240190;240191 147484;147485;147486;147487;147488;147489;147490;147491;147492;147493;147494 147491 11 LKEAGAVDATFVTK Unmodified 1448.7875 0.78749461 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 21.723 21.669 3 0.011231 6371 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 46.926 40.042 41788000 0 0 3539200 4585100 4979700 5421800 0 0 0 1573000 1730600 757830 4447900 0 0 0 0 0 5601500 3467200 0 1718100 1826700 2139300 12757 1748 12433 240192;240193;240194;240195;240196;240197;240198;240199;240200;240201;240202;240203;240204 147495;147496 147496 2 LKEDVLK Unmodified 843.50657 0.50656873 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 13.431 13.42 2 0.0024625 3205 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 130.22 69.863 108590000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 51662000 28503000 28428000 0 0 0 0 0 0 12758 1249 12434 240205;240206;240207 147497;147498;147499 147499 3 LKEIIHQQMGGLR Unmodified 1521.845 0.84496669 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 1 3 3 3 2 2 2 3 3 3 3 2 2 3 3 3 3 3 3 17.352 17.848 2;3;4 1.6404E-18 5999 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 237.68 227.31 3541300000 260970000 268530000 285020000 4211200 3637900 2142400 288060000 279990000 231900000 4287800 4405500 4147400 274750000 242180000 280360000 3549600 2497900 2427300 372230000 379850000 309000000 12927000 11847000 12417000 12759 788 12435 240208;240209;240210;240211;240212;240213;240214;240215;240216;240217;240218;240219;240220;240221;240222;240223;240224;240225;240226;240227;240228;240229;240230;240231;240232;240233;240234;240235;240236;240237;240238;240239;240240;240241;240242;240243;240244;240245;240246;240247;240248;240249;240250;240251;240252;240253;240254;240255;240256;240257;240258;240259;240260;240261;240262;240263;240264;240265;240266;240267;240268;240269;240270 147500;147501;147502;147503;147504;147505;147506;147507;147508;147509;147510;147511;147512;147513;147514;147515;147516;147517;147518;147519;147520;147521;147522;147523;147524;147525;147526;147527;147528;147529;147530;147531;147532;147533;147534;147535 147535 36 LKEISYIHAEAYAAGELK Unmodified 2005.052 0.052042156 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.414 22.125 4 0.15172 7216 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 14.276 10.557 941570000 123610000 98893000 119900000 0 3582900 3086400 0 91108000 0 11195000 10031000 17677000 81936000 75267000 76731000 0 0 0 0 109390000 106170000 0 12991000 0 12760 1137 12436 240271;240272;240273;240274;240275;240276;240277;240278;240279;240280;240281;240282;240283;240284;240285 147536 147536 1 LKELAAATSSADEGASVAYK Unmodified 1981.0004 0.0004005156 1391 P32162 yiiS UPF0381 protein YiiS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 1 23.181 22.369 2;3 2.0862E-14 7958 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 188.47 166.91 405800000 34505000 22355000 21048000 4748100 5376200 4887800 72621000 72687000 62820000 33741000 25379000 43134000 0 0 0 0 0 0 0 0 0 0 0 2495400 12761 1391 12437 240286;240287;240288;240289;240290;240291;240292;240293;240294;240295;240296;240297;240298;240299;240300;240301;240302;240303;240304;240305;240306;240307 147537;147538;147539;147540;147541;147542;147543;147544;147545 147537 9 LKELIDAGK Unmodified 985.5808 0.5807963 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 1 By MS/MS 1 15.367 16.023 2 0.12269 5480 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 63.534 51.327 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12762 1097 12438 240308 147546 147546 1 LKENLEALLVALK Unmodified 1452.8916 0.89156576 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 47.292 45.818 2;3 5.5293E-12 22320 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 184.55 149.01 1404800000 206930000 206830000 172910000 0 524590 588270 60241000 60354000 55626000 1402200 1183700 1753100 79783000 96359000 81972000 0 0 0 127480000 128990000 120290000 764080 0 823440 12763 353 12439 240309;240310;240311;240312;240313;240314;240315;240316;240317;240318;240319;240320;240321;240322;240323;240324;240325;240326;240327;240328;240329;240330;240331;240332;240333;240334;240335;240336;240337;240338;240339 147547;147548;147549;147550;147551;147552;147553;147554;147555;147556;147557;147558;147559;147560;147561;147562;147563;147564;147565;147566;147567;147568;147569;147570 147554 24 LKENLEALLVALKK Unmodified 1580.9865 0.98652877 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 2 1 39.672 38.11 3;4 1.3555E-05 13490 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 95.264 90.886 211240000 23852000 23015000 19214000 3052800 3756500 2600300 8034300 6579000 6436200 7319400 7014300 8222400 5254800 6179500 6913900 9919000 7732600 12590000 13165000 13375000 11880000 3522600 1613400 0 12764 353 12440 240340;240341;240342;240343;240344;240345;240346;240347;240348;240349;240350;240351;240352;240353;240354;240355;240356;240357;240358;240359;240360;240361;240362;240363;240364;240365;240366;240367;240368;240369;240370;240371;240372;240373 147571;147572;147573;147574;147575;147576;147577;147578;147579;147580;147581;147582;147583;147584;147585;147586;147587;147588 147571 18 LKEPENSSIYSK Unmodified 1393.7089 0.70890994 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 1 2 2 2 2 2 2 13.069 13.818 2;3 1.6145E-05 4213 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 112.44 105.75 1283200000 221000000 166550000 242350000 4320300 3060800 2407000 190730000 173890000 129640000 2871600 2883100 1339500 26205000 31292000 11111000 0 0 0 24048000 20530000 28958000 0 0 0 12765 757 12441 240374;240375;240376;240377;240378;240379;240380;240381;240382;240383;240384;240385;240386;240387;240388;240389;240390;240391;240392;240393;240394;240395;240396;240397;240398;240399;240400;240401;240402;240403;240404;240405;240406 147589;147590;147591;147592;147593;147594;147595;147596;147597;147598;147599;147600;147601;147602;147603;147604;147605;147606;147607 147590 19 LKEVAEIR Unmodified 956.56548 0.56548059 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.335 13.85 2 0.027467 3610 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 69.423 38.35 54567000 3521100 3972200 0 0 0 0 5158100 0 4861900 3612200 4090200 4370300 0 0 0 0 0 0 6822100 5600200 6535000 1753600 2343200 1927200 12766 1451 12442 240407;240408;240409;240410;240411;240412;240413;240414;240415;240416;240417;240418;240419 147608 147608 1 LKEVMEYHNFQLVNYYK Unmodified 2217.0929 0.092861113 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 1 2 3 2 1 2 1 3 3 3 3 3 3 34.516 32.961 2;3;4 2.9357E-14 15605 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 198.33 192.39 2374200000 226010000 228210000 91148000 0 3596800 1736100 94291000 187000000 83811000 1580400 5817400 1020900 198560000 224740000 182740000 0 0 0 283930000 253870000 306120000 0 0 0 12767 333 12443 240420;240421;240422;240423;240424;240425;240426;240427;240428;240429;240430;240431;240432;240433;240434;240435;240436;240437;240438;240439;240440;240441;240442;240443;240444;240445;240446;240447;240448;240449;240450;240451;240452;240453;240454;240455;240456;240457;240458;240459 147609;147610;147611;147612;147613;147614;147615;147616;147617;147618;147619;147620;147621;147622;147623;147624;147625;147626;147627;147628;147629;147630;147631;147632;147633 147621 25 LKEYNAAPPLQGFGISAPDQVK Unmodified 2342.227 0.22704641 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.761 36.903 3 1.8676E-11 17731 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.09 126.55 371680000 88034000 61590000 62864000 5569600 4369600 0 18281000 20039000 15876000 1592000 1113400 1451200 13223000 12633000 8915200 0 0 0 24481000 17511000 13526000 608150 0 0 12768 404 12444 240460;240461;240462;240463;240464;240465;240466;240467;240468;240469;240470;240471;240472;240473;240474;240475;240476;240477 147634;147635;147636;147637;147638;147639;147640;147641;147642;147643;147644;147645 147642 12 LKEYQYQEVK Unmodified 1326.682 0.68196691 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 13.346 14.241 2;3 1.1554E-10 4477 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 202.96 164.88 1211400000 90104000 79121000 81387000 2900000 2074400 1660900 128820000 138820000 132750000 0 0 0 82941000 73616000 67965000 0 0 0 94636000 115270000 119280000 0 0 0 12769 445 12445 240478;240479;240480;240481;240482;240483;240484;240485;240486;240487;240488;240489;240490;240491;240492;240493;240494;240495;240496;240497;240498;240499;240500;240501;240502;240503;240504;240505 147646;147647;147648;147649;147650;147651;147652;147653;147654;147655;147656;147657;147658;147659;147660;147661;147662;147663;147664;147665;147666;147667 147659 22 LKFYDVLLVDTAGR Unmodified 1608.8875 0.88754301 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 46.61 44.779 3 0.00016131 17902 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 78.615 73.985 49633000 0 0 0 3430600 4519600 2681400 0 0 0 7905300 7925000 8822300 0 0 0 0 0 0 0 0 0 4138900 4323300 5886500 12770 1009 12446 240506;240507;240508;240509;240510;240511;240512;240513;240514 147668;147669 147669 2 LKGDSRPVNPLEQR Unmodified 1607.8744 0.87435256 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.142 14.766 3 0.0088752 4608 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 54.598 36.798 218980000 15386000 17778000 16348000 1636300 1271300 0 18138000 0 19260000 9537100 9684900 8711400 13657000 12131000 14104000 864590 0 453770 16389000 19436000 18395000 0 2708200 3086800 12771 1880 12447 240515;240516;240517;240518;240519;240520;240521;240522;240523;240524;240525;240526;240527;240528;240529;240530;240531;240532;240533;240534 147670;147671;147672;147673;147674;147675;147676 147673 5 LKGGDPFIFGR Unmodified 1205.6557 0.65569258 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 1 By MS/MS 1 31.166 29.316 3 0.14547 14068 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 30.182 19.353 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12772 843 12448 240535 147677 147677 1 LKGILDSFK Unmodified 1019.6015 0.60153174 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 29.35 27.534 2 0.0011841 10058 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 103.87 70.322 80892000 0 0 0 3421000 4952300 4669000 0 0 0 13340000 11347000 10371000 0 0 0 0 0 0 0 0 0 12305000 10205000 10281000 12773 645 12449 240536;240537;240538;240539;240540;240541;240542;240543;240544 147678;147679;147680;147681;147682 147682 5 LKGNTGENLLALLEGR Unmodified 1696.9472 0.94718315 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 46.513 45.112 2;3 2.4143E-61 18285 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 308.84 268.92 3573000000 481500000 441020000 394590000 33158000 37624000 29095000 148430000 141630000 125380000 82376000 85173000 101250000 137470000 153010000 141050000 28628000 75875000 91194000 241570000 216650000 243550000 45588000 50998000 46187000 12774 375 12450 240545;240546;240547;240548;240549;240550;240551;240552;240553;240554;240555;240556;240557;240558;240559;240560;240561;240562;240563;240564;240565;240566;240567;240568;240569;240570;240571;240572;240573;240574;240575;240576;240577;240578;240579;240580;240581;240582;240583;240584;240585;240586;240587;240588;240589;240590;240591 147683;147684;147685;147686;147687;147688;147689;147690;147691;147692;147693;147694;147695;147696;147697;147698;147699;147700;147701;147702;147703;147704;147705;147706;147707;147708;147709;147710;147711;147712;147713;147714;147715;147716;147717;147718;147719;147720;147721;147722;147723;147724;147725;147726;147727 147689 45 LKGVLNDLAK Unmodified 1069.6495 0.64954457 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 2 1 1 1 1 1 1 1 20.536 20.718 2;3 0.046754 6802 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 32.218 25.559 87736000 6074300 6519400 7152600 6033900 5506100 6406600 9623700 0 0 10918000 6232900 7881000 3559900 1252500 1901200 0 0 0 2873500 2248100 0 1656300 671270 1224600 12775 1662 12451 240592;240593;240594;240595;240596;240597;240598;240599;240600;240601;240602;240603;240604;240605;240606;240607;240608;240609;240610;240611;240612;240613;240614;240615;240616;240617;240618;240619 147728;147729 147728 2 LKIEEESTPEIAA Unmodified 1428.7348 0.73479034 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 30.738 29.01 2 0.027409 13980 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 56.043 43.516 60027000 0 0 0 0 0 0 16977000 13233000 19323000 0 0 0 0 0 0 0 0 0 10494000 0 0 0 0 0 12776 953 12452 240620;240621;240622;240623 147730 147730 1 LKKGDGFDLNDFLEQLR Unmodified 2007.0425 0.042540102 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 1 49.863 48.404 3;4 0.001426 19689 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 63.614 54.056 49579000 0 0 0 5601700 5514200 5573700 0 0 0 9738300 5042700 7663200 0 0 0 0 0 0 0 0 0 7810700 2634000 0 12777 1009 12453 240624;240625;240626;240627;240628;240629;240630;240631;240632;240633;240634;240635;240636;240637;240638 147731;147732 147731 2 LKLDHLGK Unmodified 922.56 0.56000128 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.17 13.789 2 0.0013268 4109 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.98 110.99 452010000 27454000 24977000 28223000 11410000 0 0 15907000 5767800 4121400 6682000 6776800 6951000 33799000 38196000 28293000 5323100 0 1464900 69610000 64526000 59261000 0 0 13261000 12778 698 12454 240639;240640;240641;240642;240643;240644;240645;240646;240647;240648;240649;240650;240651;240652;240653;240654;240655;240656;240657 147733;147734;147735;147736;147737;147738;147739;147740;147741;147742 147735 10 LKLDHLGKEVLESR Unmodified 1635.9308 0.93080481 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 1 1 1 1 1 1 22.636 22.094 3;4 0.011015 6920 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 46.964 44.839 31412000 0 0 0 8895400 9060700 4830000 0 0 0 3038000 0 0 0 0 0 882300 1388600 1112100 0 0 0 0 2204700 0 12779 698 12455 240658;240659;240660;240661;240662;240663;240664;240665;240666;240667 147743;147744;147745;147746;147747 147745 5 LKLEFTDGEFR Unmodified 1353.6929 0.69286595 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 34.208 32.764 2 0.0018132 15514 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 83 66.162 26599000 2845100 0 0 0 0 0 0 2537200 0 0 0 0 2498800 0 0 0 0 0 5883300 7292100 5542500 0 0 0 12780 1070 12456 240668;240669;240670;240671;240672;240673;240674 147748;147749 147748 2 LKNDFDLDLPIAEWLDKEPELHEETLR Unmodified 3277.6507 0.65067337 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 52.647 51.486 4;5 9.8577E-17 24291 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 155.45 155.11 2886700000 135790000 120320000 101290000 19951000 9918500 14891000 124020000 137910000 126240000 211210000 196830000 185430000 131820000 120000000 122520000 83987000 136450000 173260000 142940000 159980000 151150000 95650000 95265000 89874000 12781 1057 12457 240675;240676;240677;240678;240679;240680;240681;240682;240683;240684;240685;240686;240687;240688;240689;240690;240691;240692;240693;240694;240695;240696;240697;240698;240699;240700;240701;240702;240703;240704;240705;240706;240707;240708;240709;240710;240711;240712;240713;240714;240715;240716;240717;240718;240719;240720;240721 147750;147751;147752;147753;147754;147755;147756;147757;147758;147759;147760;147761;147762;147763;147764;147765;147766;147767;147768;147769;147770;147771;147772;147773;147774;147775;147776;147777;147778;147779;147780;147781;147782;147783;147784;147785;147786;147787;147788;147789;147790;147791;147792 147789 41 LKNELIVAQK Unmodified 1154.7023 0.70230842 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.696 16.324 2 1.5302E-07 5564 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.51 127.03 128360000 7376600 4108400 3181500 1522900 1206500 1912700 7898900 13926000 8466600 4019800 3438000 4453400 8209900 9458000 6970600 0 0 0 12166000 10968000 12111000 2083500 2631800 2254000 12782 807 12458 240722;240723;240724;240725;240726;240727;240728;240729;240730;240731;240732;240733;240734;240735;240736;240737;240738;240739;240740;240741;240742 147793;147794;147795;147796;147797;147798;147799;147800;147801 147797 9 LKPQTPEEEQHD Unmodified 1449.6736 0.67358707 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 11.414 12.22 2;3 7.337E-08 3242 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 173.39 173.15 443120000 49523000 51117000 50601000 0 0 0 35138000 30984000 33723000 0 2383800 0 33800000 24874000 31760000 0 0 0 32758000 31037000 35416000 0 0 0 12783 1145 12459 240743;240744;240745;240746;240747;240748;240749;240750;240751;240752;240753;240754;240755;240756;240757;240758;240759;240760;240761;240762;240763;240764;240765;240766;240767 147802;147803;147804;147805;147806;147807;147808;147809;147810;147811;147812;147813;147814;147815;147816;147817 147809 14 LKPYSDRYPLHLSGGQQQR Unmodified 2242.1607 0.16069818 591 P0AAF6 artP Arginine transport ATP-binding protein ArtP yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 17.698 18.161 4 0.032147 5022 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 30.684 30.509 16788000 0 0 0 5441900 5351600 4320100 0 0 0 0 0 0 0 0 0 1040400 634100 0 0 0 0 0 0 0 12784 591 12460 240768;240769;240770;240771;240772 147818;147819 147818 2 LKQELANGTLK Unmodified 1213.703 0.7030367 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 2 2 2 2 2 13.466 14.076 2;3 2.8466E-05 3675 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 140.16 113.78 166840000 7729300 7870300 6322700 1406300 1916600 1456300 9918800 11504000 12036000 11351000 10812000 12527000 6170700 6772200 3065200 2671400 2114800 2124300 10966000 11510000 13649000 7290100 0 5660700 12785 826 12461 240773;240774;240775;240776;240777;240778;240779;240780;240781;240782;240783;240784;240785;240786;240787;240788;240789;240790;240791;240792;240793;240794;240795;240796;240797;240798;240799;240800;240801;240802;240803;240804;240805;240806;240807;240808;240809;240810 147820;147821;147822;147823;147824;147825;147826;147827;147828 147822 9 LKQELNYLWR Unmodified 1361.7456 0.74557022 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 3 2 2 2 2 2 30.641 29.301 2;3 1.0956E-08 9372 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 214.9 194.03 619140000 0 3074000 0 906890 750170 652380 0 0 0 79755000 63236000 75606000 0 0 0 95498000 101720000 106830000 0 0 0 29426000 30466000 31221000 12786 1338 12462 240811;240812;240813;240814;240815;240816;240817;240818;240819;240820;240821;240822;240823;240824;240825;240826;240827;240828;240829;240830;240831;240832;240833 147829;147830;147831;147832;147833;147834;147835;147836;147837;147838;147839;147840;147841;147842 147834 14 LKQGIESATQK Unmodified 1201.6667 0.6666512 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 2 2 2 2 2 2 10.882 11.671 2;3 0.0032912 2912 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 50.786 41.504 347180000 23275000 30027000 26541000 0 0 0 51995000 50918000 56548000 0 0 0 0 0 0 0 0 0 31486000 35638000 40755000 0 0 0 12787 423 12463 240834;240835;240836;240837;240838;240839;240840;240841;240842;240843;240844;240845;240846;240847;240848 147843;147844;147845;147846 147845 4 LKQPANATVTAIEMAVEK Unmodified 1913.0292 0.029198223 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 2 2 2 2 2 2 1 1 1 37.195 35.506 2;3 1.5082E-09 16996 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 153.24 144.72 1341000000 297120000 304180000 276660000 1541700 1815600 1286400 0 0 0 1766800 999130 0 26895000 27999000 28543000 0 0 0 112420000 120920000 123290000 5802000 4888900 4894200 12788 65 12464 240849;240850;240851;240852;240853;240854;240855;240856;240857;240858;240859;240860;240861;240862;240863;240864;240865;240866;240867;240868;240869;240870;240871;240872;240873;240874 147847;147848;147849;147850;147851;147852;147853;147854;147855;147856;147857;147858;147859;147860;147861 147852 15 LKSEFVK Unmodified 849.496 0.49600404 945 P0AFJ1 phnA Protein PhnA yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.02 12.885 2 0.039218 3713 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 74.415 45.077 494450000 50540000 51266000 56859000 364350 0 366290 39053000 46410000 44837000 0 0 0 38513000 38366000 39599000 0 0 0 23595000 29606000 35070000 0 0 0 12789 945 12465 240875;240876;240877;240878;240879;240880;240881;240882;240883;240884;240885;240886;240887;240888 147862 147862 1 LKSETFILDLAPK Unmodified 1473.8443 0.84428121 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.011 38.076 3 0.0060832 15099 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 58.32 55.546 88788000 0 0 0 1715300 2220900 2092500 10357000 7645100 7926300 6209000 5091600 6469700 3385200 4142500 3241600 0 0 0 7376600 5082100 5960000 2627700 3207700 4037000 12790 1447 12466 240889;240890;240891;240892;240893;240894;240895;240896;240897;240898;240899;240900;240901;240902;240903;240904;240905;240906 147863;147864;147865;147866 147864 4 LKSEYNVEAVYESVNVATAR Unmodified 2241.1277 0.12772629 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.169 36.495 3 8.4804E-07 17720 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.276 76.186 231030000 15188000 18035000 20081000 0 0 0 17235000 14627000 13089000 0 0 0 20097000 16013000 14763000 0 0 0 26544000 27504000 27851000 0 0 0 12791 346 12467 240907;240908;240909;240910;240911;240912;240913;240914;240915;240916;240917;240918 147867;147868;147869;147870;147871;147872;147873;147874;147875 147870 4 LKSLVSDDK Unmodified 1003.555 0.55497548 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By MS/MS By matching By matching By MS/MS 1 1 1 1 11.179 11.882 2 0.13366 2541 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 46.016 1.4048 608140000 0 0 0 0 377720000 2288600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1993100 0 226140000 12792 1741 12468 240919;240920;240921;240922 147876;147877 147876 2 LKTTSLYVTHDQVEAMTLAQR Unmodified 2404.242 0.24204455 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 31.468 29.604 3 0.063345 10978 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 40.012 36.868 10823000 0 0 0 0 0 0 0 0 0 0 0 2709800 0 0 0 0 0 0 0 0 0 0 4559000 3554100 12793 1064 12469 240923;240924;240925 147878 147878 0 LKVAIANVLK Unmodified 1067.7067 0.70666552 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 28.6 26.887 3 0.14271 10032 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 25.437 25.437 9867100 0 0 0 1028000 1200900 1028600 0 0 0 592080 1409200 2765700 0 0 0 0 0 0 0 0 0 0 1035000 807650 12794 377 12470 240926;240927;240928;240929;240930;240931;240932;240933 147879 147879 1 LKVPGETQTGK Unmodified 1156.6452 0.64518747 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 12.695 13.248 2;3 2.0817E-05 3151 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 122.51 106.37 404470000 17483000 17526000 13169000 10233000 11321000 10087000 7980900 9763200 7803200 48534000 46363000 41941000 8823500 7814700 6280500 8298300 4458800 8839900 10872000 15000000 8612800 28888000 29055000 25324000 12795 190 12471 240934;240935;240936;240937;240938;240939;240940;240941;240942;240943;240944;240945;240946;240947;240948;240949;240950;240951;240952;240953;240954;240955;240956;240957;240958;240959;240960;240961;240962;240963;240964;240965;240966;240967;240968 147880;147881;147882;147883;147884;147885;147886;147887;147888;147889;147890;147891;147892;147893;147894;147895;147896 147882 16 LKVSVSIFGR Unmodified 1104.6655 0.66552898 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 11 12 12 6 8 5 13 9 8 33.544 31.889 2;3 7.4214E-06 12100 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 156.62 114.96 15117000000 0 0 0 11368000 11382000 11961000 0 0 0 3844900000 3897800000 3565000000 0 0 0 294140000 297790000 342860000 0 0 0 1042500000 920490000 876700000 12796 936 12472 240969;240970;240971;240972;240973;240974;240975;240976;240977;240978;240979;240980;240981;240982;240983;240984;240985;240986;240987;240988;240989;240990;240991;240992;240993;240994;240995;240996;240997;240998;240999;241000;241001;241002;241003;241004;241005;241006;241007;241008;241009;241010;241011;241012;241013;241014;241015;241016;241017;241018;241019;241020;241021;241022;241023;241024;241025;241026;241027;241028;241029;241030;241031;241032;241033;241034;241035;241036;241037;241038;241039;241040;241041;241042;241043;241044;241045;241046;241047;241048;241049;241050;241051;241052;241053;241054;241055;241056;241057;241058;241059;241060;241061 147897;147898;147899;147900;147901;147902;147903;147904;147905;147906;147907;147908;147909;147910;147911;147912;147913;147914;147915;147916;147917;147918;147919;147920;147921;147922;147923;147924;147925;147926;147927;147928;147929;147930;147931;147932;147933;147934;147935;147936;147937;147938;147939;147940;147941;147942;147943;147944;147945;147946;147947;147948;147949;147950;147951;147952;147953;147954;147955;147956;147957;147958;147959;147960;147961;147962;147963;147964;147965;147966;147967;147968;147969;147970;147971;147972;147973;147974;147975;147976;147977;147978;147979;147980;147981;147982;147983;147984;147985;147986;147987;147988;147989;147990;147991;147992;147993;147994;147995;147996;147997;147998;147999;148000;148001;148002;148003;148004;148005;148006;148007;148008;148009;148010;148011;148012;148013 147916 117 LKVYAGNEHNHAAQQPQVLDI Unmodified 2344.1924 0.19239224 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 25.303 24.49 4 0.10441 7505 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 27.904 24.98 43793000 0 0 0 6467900 5217000 5257700 0 0 0 0 0 0 0 0 0 0 8806700 8768800 0 0 0 0 9274800 0 12797 569 12473 241062;241063;241064;241065;241066;241067 148014;148015;148016;148017;148018;148019 148015 6 LKYENEVALR Unmodified 1233.6717 0.67173657 13 CON__P13645 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 18.803 18.923 2;3 8.4243E-05 5220 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 123.51 98.659 673100000 0 0 0 49277000 60354000 61999000 0 0 0 40934000 38203000 36307000 0 0 0 17619000 11660000 2128900 0 0 0 127180000 129030000 98412000 + 12798 13 12474 241068;241069;241070;241071;241072;241073;241074;241075;241076;241077;241078;241079;241080;241081;241082;241083;241084;241085;241086;241087;241088;241089;241090 148020;148021;148022;148023;148024;148025;148026;148027;148028;148029;148030;148031;148032;148033;148034;148035 148034 16 LKYPMMR Unmodified 937.48776 0.48776432 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 18.267 18.359 2 0.0080105 5301 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 102.98 29.941 35463000 0 0 0 0 0 0 0 0 0 3018000 3074400 2224800 0 0 0 0 0 0 0 1719500 0 8494500 8664000 8268200 12799 205 12475 241091;241092;241093;241094;241095;241096;241097 148036;148037;148038 148038 3 LLAAFSQASMIHVK Unmodified 1514.8279 0.82791964 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 35.949 34.166 3 1.2725E-05 16703 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 89.629 86.791 171720000 0 2696700 0 0 0 0 36445000 37215000 36641000 1918200 0 0 20637000 15750000 20415000 0 0 0 0 0 0 0 0 0 12800 520 12476 241098;241099;241100;241101;241102;241103;241104;241105 148039;148040;148041;148042 148041 4 LLAAGIGDALATWFEAR Unmodified 1773.9414 0.94136949 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 2 1 2 2 2 2 55.679 54.2 2;3 1.8143E-24 27044 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 276.35 245.63 1182400000 39637000 45152000 43122000 0 751120 0 214580000 202470000 193280000 0 0 2159200 97736000 61923000 83934000 0 0 0 72636000 69585000 55479000 0 0 0 12801 554 12477 241106;241107;241108;241109;241110;241111;241112;241113;241114;241115;241116;241117;241118;241119;241120;241121;241122;241123;241124;241125;241126;241127 148043;148044;148045;148046;148047;148048;148049;148050;148051;148052;148053;148054;148055;148056;148057;148058 148043 16 LLAALIQMADGER Unmodified 1399.7493 0.74933497 101 P04993 recD RecBCD enzyme subunit RecD yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 49.927 48.554 2 5.5467E-05 22745 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 89.171 84.206 17523000 0 2074400 2287300 0 0 0 0 0 2255400 0 0 0 1730100 1629300 0 0 0 0 2583300 2357500 2606100 0 0 0 12802 101 12478 241128;241129;241130;241131;241132;241133;241134;241135 148059;148060 148060 0 LLADAPLVEVADGEYDVIVLPGGIK Unmodified 2565.3942 0.39417132 1970 Q46948 yajL Probable protein deglycase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.388 53.915 3 8.4671E-07 26715 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.74 95.213 377710000 42009000 37487000 30344000 0 0 0 35401000 36530000 34641000 0 0 0 22389000 23645000 23230000 0 0 0 34075000 24998000 32962000 0 0 0 12803 1970 12479 241136;241137;241138;241139;241140;241141;241142;241143;241144;241145;241146;241147 148061;148062;148063;148064;148065;148066 148065 6 LLADDIVPSR Unmodified 1097.6081 0.60807369 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 3 2 2 1 2 2 2 32.478 31.092 2;3 3.9266E-05 14459 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.84 86.292 12266000000 2546700000 2628100000 2512500000 4227800 3893800 4473900 740240000 726320000 741920000 0 0 0 241780000 232160000 218310000 0 0 0 564580000 553770000 547170000 0 0 0 12804 943 12480 241148;241149;241150;241151;241152;241153;241154;241155;241156;241157;241158;241159;241160;241161;241162;241163;241164;241165;241166;241167;241168;241169;241170;241171;241172;241173;241174 148067;148068;148069;148070;148071;148072;148073;148074;148075;148076;148077;148078;148079;148080;148081;148082;148083;148084;148085;148086;148087;148088;148089;148090 148084 23 LLADEGNINAQR Unmodified 1312.6735 0.67352749 832 P0AE45 ytfL UPF0053 inner membrane protein YtfL yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 20.054 20.448 2 2.7325E-06 8156 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.98 100.43 49844000 0 0 0 918820 828720 688590 7148000 9418700 6759200 0 0 0 3084700 2511300 3464200 0 0 0 4559300 4639500 4680500 1142200 0 0 12805 832 12481 241175;241176;241177;241178;241179;241180;241181;241182;241183;241184;241185;241186;241187 148091;148092;148093 148092 3 LLADFCK Unmodified 865.43677 0.4367746 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.709 24.636 2 0.027975 10956 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 69.093 61.27 430950000 25889000 26046000 22252000 0 0 0 36067000 35886000 36803000 4012200 0 0 31389000 30715000 27557000 1152100 0 0 52019000 51344000 49819000 0 0 0 12806 1197 12482 241188;241189;241190;241191;241192;241193;241194;241195;241196;241197;241198;241199;241200;241201 148094;148095;148096;148097;148098;148099;148100;148101 148098 8 LLADIDWQALVAR Unmodified 1482.8195 0.81946344 1803 P76008 ldcA Murein tetrapeptide carboxypeptidase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 50.057 48.64 2;3 0.024661 26109 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.885 73.885 127280000 10556000 16116000 10493000 0 0 0 8403700 8095900 4778900 1040800 1615000 0 8994800 5796100 6209200 6029000 4654900 8810900 10012000 5620300 6146200 1321400 1383000 1201800 12807 1803 12483 241202;241203;241204;241205;241206;241207;241208;241209;241210;241211;241212;241213;241214;241215;241216;241217;241218;241219;241220;241221;241222 148102;148103;148104 148104 2 LLAEAGYTADK Unmodified 1150.587 0.58700389 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 20.204 20.576 2 4.3402E-05 8055 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.66 123.44 110190000 34165000 29910000 25314000 0 0 0 3851200 3825700 2852800 0 0 0 4001700 1910700 1827000 0 0 0 2529100 0 0 0 0 0 12808 1217 12484 241223;241224;241225;241226;241227;241228;241229;241230;241231;241232 148105;148106;148107 148105 3 LLAEAGYTADKPLTINLLYNTSDLHK Unmodified 2873.5175 0.51747435 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 4 4 4 1 2 2 2 3 2 1 2 3 4 1 2 2 4 44.297 42.825 2;3;4;5 1.2613E-111 20824 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 411.13 409.67 26856000000 7396700000 6894000000 6521600000 12418000 12957000 12694000 883620000 828290000 749800000 0 2290700 0 595610000 449390000 420050000 0 1319600 0 724990000 709290000 641370000 0 0 0 12809 1217 12485 241233;241234;241235;241236;241237;241238;241239;241240;241241;241242;241243;241244;241245;241246;241247;241248;241249;241250;241251;241252;241253;241254;241255;241256;241257;241258;241259;241260;241261;241262;241263;241264;241265;241266;241267;241268;241269;241270;241271;241272;241273;241274;241275 148108;148109;148110;148111;148112;148113;148114;148115;148116;148117;148118;148119;148120;148121;148122;148123;148124;148125;148126;148127;148128;148129;148130;148131;148132;148133;148134;148135;148136;148137;148138;148139;148140;148141;148142;148143;148144;148145;148146 148131 39 LLAEAGYTADKPLTINLLYNTSDLHKK Unmodified 3001.6124 0.61243737 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 3 3 3 1 3 3 2 2 3 1 2 2 2 3 2 39.287 37.576 3;4;5 1.2067E-22 18205 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.91 167.86 883240000 207850000 191410000 207710000 7699600 16125000 14953000 22470000 25645000 65969000 0 1805200 0 11888000 0 12809000 0 0 0 22535000 55977000 18391000 0 0 0 12810 1217 12486 241276;241277;241278;241279;241280;241281;241282;241283;241284;241285;241286;241287;241288;241289;241290;241291;241292;241293;241294;241295;241296;241297;241298;241299;241300;241301;241302;241303;241304;241305;241306;241307;241308;241309;241310 148147;148148;148149;148150;148151;148152;148153;148154;148155;148156;148157;148158 148153 12 LLAECEER Unmodified 1018.4753 0.47534495 1396 P32680 yjaG Uncharacterized protein YjaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.672 14.538 2 0.00053602 4595 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.81 121.46 453700000 35767000 37806000 37374000 0 0 0 39223000 38030000 35503000 0 0 0 35985000 35824000 32943000 0 0 0 42014000 45493000 37741000 0 0 0 12811 1396 12487 241311;241312;241313;241314;241315;241316;241317;241318;241319;241320;241321;241322 148159;148160;148161;148162;148163;148164;148165;148166;148167;148168;148169;148170 148162 12 LLAEHNLDASAIK Unmodified 1393.7565 0.75652884 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 1 1 1 2 2 2 2 1 2 2 2 2 1 1 1 1 2 2 22.24 21.965 2;3 2.1425E-18 9431 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 224.24 172.79 7651600000 1641100000 1410500000 1381500000 24415000 27124000 26130000 160260000 164170000 161270000 23847000 25181000 23342000 265840000 230010000 262150000 9750100 7592000 7884400 494480000 543750000 566620000 17615000 88697000 88346000 12812 938 12488 241323;241324;241325;241326;241327;241328;241329;241330;241331;241332;241333;241334;241335;241336;241337;241338;241339;241340;241341;241342;241343;241344;241345;241346;241347;241348;241349;241350;241351;241352;241353;241354;241355;241356;241357;241358;241359;241360;241361;241362;241363 148171;148172;148173;148174;148175;148176;148177;148178;148179;148180;148181;148182;148183;148184;148185;148186;148187;148188;148189;148190;148191;148192;148193;148194;148195;148196;148197;148198;148199;148200;148201;148202;148203;148204 148180 34 LLAFLKEPEPPK Unmodified 1380.8017 0.80168812 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 33.757 31.773 3 0.0052423 12274 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 61.435 60.829 24334000 0 0 0 1615800 2075900 2270400 0 0 0 3127900 2803700 4175900 0 0 0 0 0 0 0 0 0 3402100 2509900 2352200 12813 582 12489 241364;241365;241366;241367;241368;241369;241370;241371;241372 148205;148206;148207;148208;148209 148206 5 LLAFLKEPEPPKGFR Unmodified 1740.9927 0.99267678 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.046 32.971 4 0.0065127 12505 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 53.001 46.42 31964000 0 0 0 3451900 0 2674700 0 0 0 5515500 4714000 4922600 0 0 0 0 0 0 0 0 0 3757400 3375300 3552200 12814 582 12490 241373;241374;241375;241376;241377;241378;241379;241380 148210;148211;148212;148213 148212 4 LLAGDTGK Unmodified 773.42832 0.42831841 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.447 12.972 2 0.0024747 3019 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 100.19 69.743 583660000 17341000 14303000 0 0 0 0 376330000 0 0 3631900 0 3295900 15901000 11271000 14517000 23165000 17992000 20962000 20495000 18022000 18673000 2420600 2671800 2669600 12815 80 12491 241381;241382;241383;241384;241385;241386;241387;241388;241389;241390;241391;241392;241393;241394;241395;241396;241397 148214;148215 148214 2 LLAGELAPVSGEIGLAK Unmodified 1636.94 0.93997251 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.328 43.898 2 2.7717E-06 21509 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 96.23 95.665 156910000 26565000 25772000 23355000 0 0 0 8647700 8597300 8880100 0 0 0 7987800 8383300 6005400 0 0 0 8761300 12858000 11101000 0 0 0 12816 1664 12492 241398;241399;241400;241401;241402;241403;241404;241405;241406;241407;241408;241409 148216;148217;148218;148219 148216 3 LLAIDRDPQAIAVAK Unmodified 1592.925 0.92499115 1619 P60390 rsmH Ribosomal RNA small subunit methyltransferase H yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 29.979 28.58 2;3 0.017829 12808 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 66.056 59.815 532880000 51173000 50895000 48040000 0 1467800 1285400 49205000 40708000 46949000 2696200 2796000 1804400 30662000 33067000 31967000 0 3403800 3636100 42292000 47902000 33583000 2949800 3271400 3125300 12817 1619 12493 241410;241411;241412;241413;241414;241415;241416;241417;241418;241419;241420;241421;241422;241423;241424;241425;241426;241427;241428;241429;241430;241431;241432;241433;241434;241435;241436;241437;241438;241439;241440;241441;241442;241443 148220;148221;148222;148223 148223 4 LLAITHVSNVLGTENPLAEMITLAHQHGAK Unmodified 3177.6969 0.69685247 1906 P77444 sufS Cysteine desulfurase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.083 49.807 5 3.2826E-09 24613 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 111.2 108.39 443420000 55259000 49594000 50614000 9391800 8209100 9802700 38937000 41723000 44932000 0 0 0 13743000 11907000 15587000 0 0 0 32137000 22712000 20897000 5834400 5650700 6487100 12818 1906 12494 241444;241445;241446;241447;241448;241449;241450;241451;241452;241453;241454;241455;241456;241457;241458;241459;241460;241461 148224;148225;148226;148227;148228;148229;148230;148231;148232;148233;148234;148235;148236;148237;148238 148225 15 LLAITPDK Unmodified 869.52222 0.52221879 1804 P76010 ycgR Flagellar brake protein YcgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 24.293 23.527 2 0.0023436 10351 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.28 65.099 108900000 40687000 35839000 31841000 0 533350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12819 1804 12495 241462;241463;241464;241465 148239;148240;148241 148239 3 LLALDSQLTNDFSEK Unmodified 1692.857 0.85703074 1898 P77335 hlyE Hemolysin E, chromosomal yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 45.364 43.547 2 2.0379E-15 17332 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 197.56 194.24 53846000 3239500 0 4331000 538150 0 745540 10679000 8555800 7532800 6579900 6407100 5237500 0 0 0 0 0 0 0 0 0 0 0 0 12820 1898 12496 241466;241467;241468;241469;241470;241471;241472;241473;241474;241475 148242;148243;148244;148245 148244 3 LLALHMYDCAR Unmodified 1361.6584 0.65841147 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 2 2 1 1 1 2 29.174 27.815 2;3 6.037E-05 13175 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.63 112.64 1269900000 147350000 155230000 134240000 0 0 0 196130000 203990000 274260000 4367000 3759200 3871500 22823000 19742000 15854000 0 0 0 26296000 30016000 31992000 0 0 0 12821 1191 12497 241476;241477;241478;241479;241480;241481;241482;241483;241484;241485;241486;241487;241488;241489;241490;241491;241492;241493;241494;241495;241496;241497 148246;148247;148248;148249;148250;148251;148252;148253;148254;148255;148256;148257;148258;148259;148260;148261 148249 16 LLALLAER Unmodified 897.56475 0.56475231 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.744 35.031 2 6.3142E-05 17177 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 168.45 96.502 817440000 210830000 183110000 152270000 3992900 3963900 3522900 16880000 18441000 21277000 1187100 932520 1085000 33812000 30438000 29928000 0 579280 0 29329000 33798000 39326000 802160 825460 1111500 12822 529 12498 241498;241499;241500;241501;241502;241503;241504;241505;241506;241507;241508;241509;241510;241511;241512;241513;241514;241515;241516;241517;241518;241519 148262;148263;148264;148265;148266;148267;148268;148269;148270;148271;148272;148273;148274;148275 148263 14 LLALMGELEGR Unmodified 1200.6536 0.65364367 32 P00547 thrB Homoserine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1 1 3 1 1 1 1 1 1 2 2 2 2 2 2 39.478 38.152 2;3 0.00014256 21230 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.13 117.25 459570000 44936000 45988000 38601000 0 0 0 17109000 10917000 9976500 0 3598500 38952000 14015000 15277000 13525000 20035000 16126000 19298000 29072000 30656000 30211000 21907000 20746000 18622000 12823 32 12499 241520;241521;241522;241523;241524;241525;241526;241527;241528;241529;241530;241531;241532;241533;241534;241535;241536;241537;241538;241539;241540;241541;241542;241543;241544;241545;241546;241547;241548 148276;148277;148278;148279;148280;148281;148282;148283;148284;148285;148286;148287;148288 148282 13 LLALSETSR Unmodified 988.55531 0.55530983 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.411 22.697 2 0.0063099 7828 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 71.379 55.881 161370000 14607000 14289000 11337000 3560700 5819700 5356500 0 0 14506000 0 0 0 15956000 14576000 11403000 0 0 0 0 15006000 0 15316000 10364000 9272100 12824 1964 12500 241549;241550;241551;241552;241553;241554;241555;241556;241557;241558;241559;241560;241561;241562 148289;148290;148291;148292;148293;148294;148295 148289 3 LLANQEEGTQIR Unmodified 1370.7154 0.7153923 1654 P63020 nfuA Fe/S biogenesis protein NfuA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.431 18.749 2 1.5841E-23 7055 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 240.47 222.66 3816000000 268310000 306390000 252740000 0 0 0 340210000 326400000 321400000 30827000 25107000 20070000 284100000 291770000 283110000 5433500 5167300 6137300 366050000 329580000 308810000 13624000 14934000 15865000 12825 1654 12501 241563;241564;241565;241566;241567;241568;241569;241570;241571;241572;241573;241574;241575;241576;241577;241578;241579;241580;241581;241582;241583 148296;148297;148298;148299;148300;148301;148302;148303;148304;148305;148306;148307;148308 148299 13 LLANRPESALAVTLAR Unmodified 1693.9839 0.98390301 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 32.312 30.915 2;3 1.8144E-30 14589 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 234.9 234.9 2332600000 100900000 103580000 86408000 55706000 52089000 44639000 98594000 94099000 86525000 86311000 79788000 83186000 79212000 75406000 71185000 24946000 21622000 20040000 242490000 225720000 229360000 124420000 132870000 113540000 12826 215 12502 241584;241585;241586;241587;241588;241589;241590;241591;241592;241593;241594;241595;241596;241597;241598;241599;241600;241601;241602;241603;241604;241605;241606;241607;241608;241609;241610;241611;241612;241613;241614;241615;241616;241617;241618;241619;241620;241621;241622;241623;241624;241625;241626;241627;241628;241629;241630;241631 148309;148310;148311;148312;148313;148314;148315;148316;148317;148318;148319;148320;148321;148322;148323;148324;148325;148326;148327;148328;148329;148330;148331;148332;148333;148334;148335;148336;148337;148338;148339;148340;148341;148342;148343;148344;148345;148346 148331 38 LLAPLAK Unmodified 724.48471 0.48471107 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 1 2 1 22.483 22.061 2 0.019212 9497 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 77.944 57.806 344710000 46739000 44652000 40652000 0 0 0 26130000 25814000 25886000 0 0 0 21560000 22020000 18019000 0 0 0 24078000 28646000 20513000 0 0 0 12827 1387 12503 241632;241633;241634;241635;241636;241637;241638;241639;241640;241641;241642;241643;241644;241645;241646;241647;241648;241649;241650;241651 148347;148348;148349;148350;148351;148352;148353;148354;148355;148356;148357;148358 148351 11 LLAQICQR Unmodified 1000.5488 0.54878467 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 20.462 20.736 2 0.0050454 8087 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.98 99.588 1074300000 85491000 76489000 81771000 1911700 1956800 1539600 93438000 90905000 83654000 1852200 0 0 76103000 66066000 64029000 0 0 0 105360000 125870000 113390000 1386300 1105100 1935600 12828 1348 12504 241652;241653;241654;241655;241656;241657;241658;241659;241660;241661;241662;241663;241664;241665;241666;241667;241668;241669;241670;241671 148359;148360;148361;148362 148361 1 LLAQICYYFEAVAQLPQETR Unmodified 2412.2148 0.21476716 52 P00934 thrC Threonine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.316 53.864 3 1.9062E-07 26415 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 107.18 100.15 153840000 25081000 19174000 17898000 0 1407600 1264700 8833500 6179500 7800300 0 0 0 7013500 8182400 4168300 0 0 0 19922000 15388000 11524000 0 0 0 12829 52 12505 241672;241673;241674;241675;241676;241677;241678;241679;241680;241681;241682;241683;241684;241685 148363 148363 1 LLASAAQENEPFWR Unmodified 1630.8104 0.81035532 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 38.971 37.292 2;3 4.5968E-56 18557 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 305.7 284.92 3572300000 255980000 253800000 234420000 1104200 847280 1546400 336190000 309690000 324390000 0 0 0 298040000 268130000 267060000 0 0 0 347310000 349810000 324030000 0 0 0 12830 1456 12506 241686;241687;241688;241689;241690;241691;241692;241693;241694;241695;241696;241697;241698;241699;241700;241701;241702;241703;241704;241705;241706;241707;241708;241709;241710;241711;241712;241713 148364;148365;148366;148367;148368;148369;148370;148371;148372;148373;148374;148375;148376;148377;148378;148379;148380;148381;148382;148383;148384;148385;148386 148364 23 LLASDIPLVVIETSR Unmodified 1624.94 0.93997251 1544 P39830 ybaL Inner membrane protein YbaL yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.968 52.522 2 3.1984E-07 21233 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 130.1 118.23 149740000 8138800 6154900 4949700 0 4051800 0 11990000 10481000 7474500 6564000 7076900 7173100 11553000 10519000 8727300 0 0 0 13818000 13912000 12874000 0 0 4281000 12831 1544 12507 241714;241715;241716;241717;241718;241719;241720;241721;241722;241723;241724;241725;241726;241727;241728;241729;241730 148387;148388 148387 2 LLASVFQTLR Unmodified 1146.6761 0.67609367 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.651 41.939 2 0.00012563 20519 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.12 113.96 143860000 41059000 40839000 36365000 0 935680 0 2886600 2721600 3190300 952110 1047100 1066100 2108400 1377500 2040500 0 0 0 2661500 2095900 2516700 0 0 0 12832 49 12508 241731;241732;241733;241734;241735;241736;241737;241738;241739;241740;241741;241742;241743;241744;241745;241746 148389;148390;148391 148389 3 LLAVGHYLESTVDIAESTR Unmodified 2073.0742 0.074234161 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.153 43.81 3 1.4268E-07 21440 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.38 104.17 821300000 214320000 0 203650000 1832600 1979900 1571700 0 0 0 0 0 0 46581000 44831000 43415000 0 0 0 77556000 103820000 81744000 0 0 0 12833 34 12509 241747;241748;241749;241750;241751;241752;241753;241754;241755;241756;241757 148392;148393 148392 2 LLAVLLNNAGK Unmodified 1124.6917 0.69174374 1187 P21866 kdpE KDP operon transcriptional regulatory protein KdpE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 37.338 35.548 2 0.020095 17017 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.59 60.59 25973000 5740000 6850700 4867200 0 0 0 2408700 1079700 2291000 0 0 0 0 0 0 0 0 0 2735400 0 0 0 0 0 12834 1187 12510 241758;241759;241760;241761;241762;241763;241764 148394;148395;148396 148395 0 LLAWLETLK Unmodified 1085.6485 0.64848194 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 3 2 2 2 2 2 2 2 3 2 1 1 1 2 2 2 2 2 2 50.429 49.126 1;2 5.3784E-05 19708 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 148.04 132.38 5980000000 410100000 30797000 399820000 153730000 140720000 136100000 836020000 798260000 735490000 168850000 138190000 153110000 260580000 257990000 16731000 5697800 6615200 9603500 289170000 307040000 278000000 163120000 146280000 137990000 12835 548 12511 241765;241766;241767;241768;241769;241770;241771;241772;241773;241774;241775;241776;241777;241778;241779;241780;241781;241782;241783;241784;241785;241786;241787;241788;241789;241790;241791;241792;241793;241794;241795;241796;241797;241798;241799;241800;241801;241802;241803;241804;241805;241806;241807;241808;241809;241810;241811;241812 148397;148398;148399;148400;148401;148402;148403;148404;148405;148406;148407;148408;148409;148410;148411;148412;148413;148414;148415;148416;148417;148418;148419;148420;148421;148422;148423;148424;148425;148426;148427;148428;148429;148430 148403 31 LLAWLETLKAELGIPK Unmodified 1794.0655 0.065507375 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.052 53.669 3 0.14681 19663 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 21.886 14.656 20932000 0 0 0 4424000 4250200 4105800 0 0 0 0 1892400 0 0 0 0 0 0 0 0 0 0 0 2650200 3609200 12836 548 12512 241813;241814;241815;241816;241817;241818 148431 148431 1 LLAYNCSPSFNWQK Unmodified 1726.8137 0.81372614 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 1 1 2 1 2 1 39.708 38.074 2;3 1.219E-14 18340 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 194.12 184.01 16856000000 4261900000 3940500000 3863400000 10610000 12836000 11110000 724710000 725040000 718040000 3696300 0 3642000 316220000 281150000 299000000 0 6316100 10712000 587890000 542360000 535400000 0 0 1533200 12837 517 12513 241819;241820;241821;241822;241823;241824;241825;241826;241827;241828;241829;241830;241831;241832;241833;241834;241835;241836;241837;241838;241839;241840;241841;241842;241843;241844;241845;241846;241847;241848 148432;148433;148434;148435;148436;148437;148438;148439;148440;148441;148442;148443;148444;148445;148446;148447;148448;148449;148450;148451;148452;148453;148454 148439 23 LLCEWYLR Unmodified 1151.5798 0.57975044 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.093 39.329 2 6.9182E-05 18240 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 167.25 98.831 1227300000 220200000 217220000 215320000 2218900 1882700 2654900 139590000 141650000 126360000 0 1841100 1927500 27315000 22814000 23896000 0 0 0 25874000 30891000 25654000 0 0 0 12838 757 12514 241849;241850;241851;241852;241853;241854;241855;241856;241857;241858;241859;241860;241861;241862;241863;241864;241865 148455;148456;148457;148458;148459;148460;148461;148462;148463 148463 9 LLDAGVR Unmodified 742.43374 0.43373813 1340 P30137 thiE Thiamine-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 3 2 2 2 3 3 2 3 3 3 2 3 2 2 3 2 2 2 2 3 1 2 17.941 18.326 2 0.0016613 7387 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 126.05 69.536 6331200000 506230000 368430000 469040000 13987000 14594000 12481000 557310000 568670000 560280000 10181000 8714000 8956200 433270000 412320000 399720000 84166000 67381000 70989000 587520000 592210000 555540000 12458000 6902800 9899200 12839 1340 12515 241866;241867;241868;241869;241870;241871;241872;241873;241874;241875;241876;241877;241878;241879;241880;241881;241882;241883;241884;241885;241886;241887;241888;241889;241890;241891;241892;241893;241894;241895;241896;241897;241898;241899;241900;241901;241902;241903;241904;241905;241906;241907;241908;241909;241910;241911;241912;241913;241914;241915;241916;241917;241918;241919;241920 148464;148465;148466;148467;148468;148469;148470;148471;148472;148473;148474;148475;148476;148477;148478;148479;148480;148481;148482;148483;148484;148485;148486;148487;148488 148472 25 LLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLR Unmodified 3780.8054 0.80535288 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.584 45.141 5 5.4552E-26 21946 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 176.94 172.67 577780000 34100000 33997000 23152000 0 0 0 37071000 48876000 45954000 0 0 0 48738000 57821000 46517000 0 0 0 64055000 78117000 59379000 0 0 0 12840 505 12516 241921;241922;241923;241924;241925;241926;241927;241928;241929;241930;241931;241932 148489;148490;148491;148492;148493;148494;148495;148496;148497;148498;148499 148493 11 LLDDGKEHFFINISLDTAR Unmodified 2203.1273 0.12733236 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 44.791 43.274 3;4 2.0132E-10 21586 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.88 124.37 775980000 16484000 17213000 15846000 4016900 3219200 4494500 60470000 54590000 51233000 14445000 11054000 10415000 51997000 41630000 42165000 9053200 5834000 4020300 93043000 91545000 95124000 29822000 23071000 25190000 12841 1819 12517 241933;241934;241935;241936;241937;241938;241939;241940;241941;241942;241943;241944;241945;241946;241947;241948;241949;241950;241951;241952;241953;241954;241955;241956;241957;241958;241959;241960;241961;241962;241963;241964;241965;241966;241967;241968;241969;241970;241971;241972;241973;241974;241975;241976 148500;148501;148502;148503;148504;148505;148506;148507;148508;148509;148510;148511;148512;148513;148514;148515;148516;148517;148518;148519;148520;148521;148522;148523;148524;148525;148526;148527;148528;148529 148506 29 LLDEAER Unmodified 844.42905 0.42904669 83 P03841 malM Maltose operon periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.324 14.922 2 0.00019464 4752 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.34 131.23 2259200000 97217000 79760000 87679000 3788000 3047300 4821400 180250000 170440000 164130000 18312000 17159000 16317000 184140000 184750000 164110000 4841000 5606300 5854900 289110000 293060000 258250000 8997900 9130600 8394800 12842 83 12518 241977;241978;241979;241980;241981;241982;241983;241984;241985;241986;241987;241988;241989;241990;241991;241992;241993;241994;241995;241996;241997;241998;241999;242000 148530;148531;148532;148533;148534;148535;148536;148537;148538;148539;148540;148541;148542;148543;148544;148545;148546;148547;148548;148549;148550 148538 19 LLDEGNTVPFIAR Unmodified 1443.7722 0.7721789 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.102 40.252 2 1.0012E-08 20083 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 160.53 119.5 496710000 43458000 33473000 31367000 1044000 887680 1293300 38103000 37678000 38546000 2077300 2312300 1336600 32542000 35568000 41346000 0 0 0 46809000 51497000 57371000 0 0 0 12843 1586 12519 242001;242002;242003;242004;242005;242006;242007;242008;242009;242010;242011;242012;242013;242014;242015;242016;242017;242018 148551 148551 1 LLDELNSTLR Unmodified 1172.6401 0.6401021 743 P0ACR7 yfeR Uncharacterized HTH-type transcriptional regulator YfeR yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 34.33 34.352 2 0.08694 12334 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 45.368 29.726 4102700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1510000 1334900 1257800 0 0 0 0 0 0 12844 743 12520 242019;242020;242021 148552 148552 0 LLDEYKELLDQIAELLR Unmodified 2073.1358 0.13577179 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.851 54.391 3 3.724E-07 26857 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.75 104.6 169400000 6997400 6736300 7330100 0 0 0 7288300 5210500 8210200 6457300 7953500 5763900 18238000 13371000 14038000 0 0 0 19622000 18847000 15910000 0 4556900 2868100 12845 882 12521 242022;242023;242024;242025;242026;242027;242028;242029;242030;242031;242032;242033;242034;242035;242036;242037;242038 148553;148554;148555;148556;148557 148556 3 LLDGGWQTWSDAGLPVER Unmodified 1998.9799 0.97993984 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 51.921 50.642 2 3.3689E-22 24606 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 237.48 230.11 457140000 0 0 9735900 0 0 0 60606000 86130000 51220000 0 0 0 0 97672000 92933000 0 0 0 0 58841000 0 0 0 0 12846 1947 12522 242039;242040;242041;242042;242043;242044;242045 148558;148559 148559 2 LLDGLAK Unmodified 728.44324 0.44324019 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.64 22.919 2 0.001881 9923 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.15 60.157 762850000 37404000 44678000 37823000 0 0 0 71418000 71694000 70279000 0 0 0 77652000 67782000 65372000 0 0 0 76109000 73035000 69603000 0 0 0 12847 1500 12523 242046;242047;242048;242049;242050;242051;242052;242053;242054;242055;242056;242057 148560;148561;148562;148563;148564;148565;148566 148562 7 LLDIVCGAPNCR Unmodified 1386.6748 0.67478982 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 1 1 1 2 1 2 2 2 2 32.909 31.333 2;3 7.8417E-17 14828 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 210.37 207.23 2882900000 251550000 246970000 201130000 1994700 2557500 2643700 188960000 184050000 191930000 2892200 1896700 1986200 270080000 248480000 274950000 0 0 0 255280000 272580000 283000000 0 0 0 12848 161 12524 242058;242059;242060;242061;242062;242063;242064;242065;242066;242067;242068;242069;242070;242071;242072;242073;242074;242075;242076;242077;242078;242079;242080;242081;242082 148567;148568;148569;148570;148571;148572;148573;148574;148575;148576;148577;148578;148579;148580;148581;148582 148573 14 LLDLAAPDIIVR Unmodified 1307.7813 0.78128702 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 1 1 3 3 3 5 4 5 3 3 3 9 14 12 3 3 3 6 6 6 50.1 49.099 1;2;3 2.8614E-23 17858 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 241.13 241.13 66492000000 599200000 535300000 448750000 1010100 1166200 803590 457380000 435790000 430150000 5062100000 4555500000 4103300000 443770000 439910000 407250000 10497000000 9752400000 9591900000 662610000 594440000 591400000 5854800000 5550600000 5474800000 12849 458 12525 242083;242084;242085;242086;242087;242088;242089;242090;242091;242092;242093;242094;242095;242096;242097;242098;242099;242100;242101;242102;242103;242104;242105;242106;242107;242108;242109;242110;242111;242112;242113;242114;242115;242116;242117;242118;242119;242120;242121;242122;242123;242124;242125;242126;242127;242128;242129;242130;242131;242132;242133;242134;242135;242136;242137;242138;242139;242140;242141;242142;242143;242144;242145;242146;242147;242148;242149;242150;242151;242152;242153;242154;242155;242156;242157;242158;242159;242160;242161;242162;242163;242164;242165;242166;242167;242168;242169;242170;242171;242172;242173;242174;242175;242176;242177;242178;242179;242180;242181;242182;242183;242184;242185;242186;242187;242188;242189 148583;148584;148585;148586;148587;148588;148589;148590;148591;148592;148593;148594;148595;148596;148597;148598;148599;148600;148601;148602;148603;148604;148605;148606;148607;148608;148609;148610;148611;148612;148613;148614;148615;148616;148617;148618;148619;148620;148621;148622;148623;148624;148625;148626;148627;148628;148629;148630;148631;148632;148633;148634;148635;148636;148637;148638;148639;148640;148641;148642;148643;148644;148645;148646;148647;148648;148649;148650;148651;148652;148653;148654;148655;148656;148657;148658;148659;148660;148661;148662;148663;148664;148665;148666;148667 148611 69 LLDLTPPTAR Unmodified 1095.6288 0.62880913 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 34.581 32.611 2 0.0030405 16092 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 75.378 32.78 42661000 0 0 0 0 0 0 11936000 10019000 2892200 4220900 4581900 4459100 0 0 0 0 0 0 2679400 1872400 0 0 0 0 12850 1980 12526 242190;242191;242192;242193;242194;242195;242196;242197 148668 148668 1 LLDNAAADLAAISGQK Unmodified 1569.8362 0.83623572 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 1 1 1 1 2 2 1 2 2 2 3 1 1 2 2 2 2 2 2 44.455 42.828 2;3 2.9815E-10 20880 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 137.79 135.64 5358000000 785230000 869390000 722910000 5816400 3995500 3420700 161990000 165560000 226800000 15321000 10743000 15192000 349740000 322880000 315010000 0 6944300 0 456020000 478000000 398760000 14774000 15393000 14066000 12851 1644 12527 242198;242199;242200;242201;242202;242203;242204;242205;242206;242207;242208;242209;242210;242211;242212;242213;242214;242215;242216;242217;242218;242219;242220;242221;242222;242223;242224;242225;242226;242227;242228;242229;242230;242231;242232;242233;242234;242235;242236;242237;242238;242239 148669;148670;148671;148672;148673;148674;148675;148676;148677;148678;148679;148680;148681;148682;148683;148684;148685;148686;148687;148688;148689;148690 148682 19 LLDNAAADLAAISGQKPLITK Unmodified 2122.1998 0.19976903 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 3 3 3 3 45.378 43.936 2;3;4 2.8293E-28 21386 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 259.96 259.87 8127600000 837850000 801710000 739120000 114250000 126780000 120380000 254350000 243790000 222620000 289380000 249930000 236460000 290340000 279430000 262820000 301680000 271490000 355500000 510230000 514980000 473940000 199940000 219260000 211330000 12852 1644 12528 242240;242241;242242;242243;242244;242245;242246;242247;242248;242249;242250;242251;242252;242253;242254;242255;242256;242257;242258;242259;242260;242261;242262;242263;242264;242265;242266;242267;242268;242269;242270;242271;242272;242273;242274;242275;242276;242277;242278;242279;242280;242281;242282;242283;242284;242285;242286;242287;242288;242289;242290;242291;242292;242293;242294;242295;242296;242297;242298;242299;242300;242301;242302;242303;242304;242305;242306;242307;242308;242309 148691;148692;148693;148694;148695;148696;148697;148698;148699;148700;148701;148702;148703;148704;148705;148706;148707;148708;148709;148710;148711;148712;148713;148714;148715;148716;148717;148718;148719;148720;148721;148722;148723;148724;148725;148726;148727;148728;148729;148730;148731;148732;148733;148734;148735;148736;148737;148738;148739;148740;148741;148742;148743;148744;148745;148746;148747;148748;148749;148750;148751 148740 60 LLDNAAEPYR Unmodified 1160.5826 0.58258722 1605 P52108 rstA Transcriptional regulatory protein RstA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 2 1 1 1 1 1 1 1 1 23.026 22.301 2 3.4072E-07 9559 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.78 154.29 355480000 19433000 20876000 19084000 0 0 0 28032000 31621000 37665000 0 1734700 4874500 25227000 25224000 28753000 0 0 0 39565000 36323000 37069000 0 0 0 12853 1605 12529 242310;242311;242312;242313;242314;242315;242316;242317;242318;242319;242320;242321;242322;242323;242324;242325 148752;148753;148754;148755;148756;148757;148758;148759;148760;148761 148758 10 LLDNLLTK Unmodified 928.55933 0.55933258 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.366 33.826 2 0.00024327 13467 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 150.35 63.067 1031400000 27213000 20413000 23326000 23881000 22993000 25145000 90102000 91046000 70341000 53657000 63289000 53391000 50370000 49561000 41935000 13394000 11776000 13322000 55475000 65489000 57208000 33273000 37336000 37422000 12854 595 12530 242326;242327;242328;242329;242330;242331;242332;242333;242334;242335;242336;242337;242338;242339;242340;242341;242342;242343;242344;242345;242346;242347;242348;242349 148762;148763;148764;148765;148766;148767;148768;148769;148770;148771;148772;148773;148774;148775;148776;148777;148778 148762 16 LLDPNRFHDFAQFVEEQK Unmodified 2232.0964 0.096366586 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 4 1 3 2 3 4 3 3 43.242 41.684 2;3;4 1.1126E-28 17101 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 230.86 202.89 12231000000 0 0 0 771430 0 0 0 0 0 1293800000 1199000000 1151700000 0 0 1404900 2358700000 1647600000 1515100000 0 0 0 982470000 1105900000 974040000 12855 1616 12531 242350;242351;242352;242353;242354;242355;242356;242357;242358;242359;242360;242361;242362;242363;242364;242365;242366;242367;242368;242369;242370;242371;242372;242373;242374;242375;242376;242377;242378;242379 148779;148780;148781;148782;148783;148784;148785;148786;148787;148788;148789;148790;148791;148792;148793;148794;148795;148796;148797;148798;148799;148800;148801;148802;148803;148804 148788 26 LLDQFADK Unmodified 948.49165 0.49164694 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 25.585 24.705 2 0.0026172 10911 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.997 63.503 160030000 30710000 23387000 23690000 0 0 0 0 0 0 0 0 0 21275000 20524000 19181000 0 0 0 0 0 21260000 0 0 0 12856 1609 12532 242380;242381;242382;242383;242384;242385;242386 148805;148806;148807 148806 1 LLDQFNNPDNPYAHYTTTGPEIWQQTGGR Unmodified 3332.5487 0.54866791 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.429 44.12 3 3.1338E-31 21481 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.72 183.88 507110000 58396000 56784000 47510000 0 0 0 0 0 0 0 0 0 58675000 0 63088000 0 0 0 69798000 73678000 79187000 0 0 0 12857 1133 12533 242387;242388;242389;242390;242391;242392;242393;242394 148808;148809;148810;148811;148812;148813;148814 148809 6 LLDSCHALMNYGVDR Unmodified 1762.8131 0.81307421 1327 P29013 ycgB Uncharacterized protein YcgB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 31.846 30.521 3 0.022775 14772 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 44.807 44.117 51485000 19918000 0 0 0 0 0 22965000 0 0 0 0 0 0 4102000 4499700 0 0 0 0 0 0 0 0 0 12858 1327 12534 242395;242396;242397;242398 148815;148816 148815 0 LLDSLGK Unmodified 744.43815 0.43815481 231 P0A6D0 argR Arginine repressor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 21.248 21.584 2 0.15534 8628 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 43.814 6.8394 278040000 38600000 36373000 37675000 912560 0 0 20690000 20920000 19664000 0 0 0 19482000 19630000 16253000 0 0 0 18746000 14136000 14956000 0 0 0 12859 231 12535 242399;242400;242401;242402;242403;242404;242405;242406;242407;242408;242409;242410;242411 148817 148817 1 LLDVLDK Unmodified 814.48002 0.48001963 1957 Q46845 yghU Disulfide-bond oxidoreductase YghU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.164 29.808 2 0.0027054 14024 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 111.04 31.582 807650000 147930000 128340000 129470000 0 0 0 58270000 61902000 67806000 0 0 0 22422000 28107000 26548000 0 0 0 46916000 45283000 44650000 0 0 0 12860 1957 12536 242412;242413;242414;242415;242416;242417;242418;242419;242420;242421;242422;242423 148818;148819;148820;148821;148822;148823;148824;148825;148826;148827;148828;148829 148821 12 LLDVPFTMADATTLTEAGYVGEDVENIIQK Unmodified 3252.6112 0.61117632 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.668 54.236 3 1.7428E-11 26617 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 120.93 117.74 719780000 63917000 56420000 54275000 5883400 5169600 5152900 51873000 47241000 0 11473000 6791400 7966100 63115000 67731000 57329000 0 0 0 77146000 66078000 66440000 3237200 2543300 0 12861 244 12537 242424;242425;242426;242427;242428;242429;242430;242431;242432;242433;242434;242435;242436;242437;242438;242439;242440;242441;242442 148830;148831;148832;148833;148834;148835;148836 148832 7 LLDYLKR Unmodified 919.5491 0.54910224 823 P0ADZ4 rpsO 30S ribosomal protein S15 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 22.372 21.945 2 0.064885 7569 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 62.715 45.773 75433000 0 0 0 718370 763120 606720 0 0 0 3464000 3009500 1942100 0 0 0 39948000 12005000 11946000 0 0 0 1029500 0 0 12862 823 12538 242443;242444;242445;242446;242447;242448;242449;242450;242451;242452 148837 148837 1 LLEATQYR Unmodified 992.5291 0.52909508 70 P02919 mrcB Penicillin-binding protein 1B;Penicillin-insensitive transglycosylase;Penicillin-sensitive transpeptidase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 19.331 19.404 2 0.074458 6089 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 54.611 39.23 9717100 0 0 0 731440 1217100 0 0 0 0 1624900 2016400 1678600 0 0 0 0 0 0 0 0 0 819790 587910 1040900 12863 70 12539 242453;242454;242455;242456;242457;242458;242459;242460 148838 148838 1 LLECDDPDLFNWLMNHGK Unmodified 2216.0031 0.0030598275 1686 P64559 cptB Antitoxin CptB yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.473 52.033 3 2.1312E-18 25510 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 136.81 136.81 295430000 19921000 21582000 20645000 0 0 0 30913000 35187000 33217000 0 0 0 20282000 19707000 21408000 0 0 0 24363000 23863000 24346000 0 0 0 12864 1686 12540 242461;242462;242463;242464;242465;242466;242467;242468;242469;242470;242471;242472 148839;148840;148841;148842;148843;148844;148845;148846;148847;148848 148841 9 LLECDDPDLFNWLMNHGKPADAELEMMVR Unmodified 3458.5767 0.57673862 1686 P64559 cptB Antitoxin CptB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.345 52.897 4 2.5509E-31 25927 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 189.2 188.62 1017200000 96514000 91613000 93845000 0 0 0 61456000 47185000 50820000 0 0 0 93631000 87677000 77126000 0 0 0 102580000 120290000 94494000 0 0 0 12865 1686 12541 242473;242474;242475;242476;242477;242478;242479;242480;242481;242482;242483;242484 148849;148850;148851;148852;148853;148854;148855;148856;148857;148858 148856 10 LLEELGQVEK Unmodified 1156.634 0.63395409 316 P0A780 nusB N utilization substance protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.944 29.572 2 0.00028301 10020 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 113.62 99.485 1734100000 146710000 132760000 114370000 0 0 0 136220000 127120000 124350000 28676000 27439000 26357000 109980000 108520000 113060000 10569000 8325900 8679800 161560000 158520000 163560000 8710400 8952900 9665700 12866 316 12542 242485;242486;242487;242488;242489;242490;242491;242492;242493;242494;242495;242496;242497;242498;242499;242500;242501;242502;242503;242504;242505 148859;148860;148861;148862;148863;148864;148865;148866;148867;148868;148869 148860 7 LLEEYVGQPQVR Unmodified 1429.7565 0.75652884 387 P0A812 ruvB Holliday junction ATP-dependent DNA helicase RuvB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.316 30.064 2 8.5421E-06 14194 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.68 134.12 142260000 18377000 19110000 16696000 0 0 0 0 0 13175000 0 0 0 10844000 9658600 10070000 0 0 0 12992000 15535000 15807000 0 0 0 12867 387 12543 242506;242507;242508;242509;242510;242511;242512;242513;242514;242515 148870;148871;148872 148870 3 LLEGEDAHLSSSQFSSGSQSSR Unmodified 2308.0567 0.056746196 6 CON__P02533;CON__Q61782 yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 24.596 23.392 3 1.2026E-15 8367 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 127.5 127.46 33740000 0 0 0 786170 1027900 939210 0 0 0 8186600 7921700 7084000 0 0 0 0 0 0 0 0 0 2424400 2994600 2375600 + 12868 6 12544 242516;242517;242518;242519;242520;242521;242522;242523;242524 148873;148874;148875;148876;148877 148874 5 LLEGEECR Unmodified 1004.4597 0.45969489 17;14;8;21 CON__P35908;CON__Q6NXH9;CON__P48668;CON__P02538;CON__P04259;CON__P13647;CON__Q7RTS7;CON__Q32MB2 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 13.911 14.312 2 0.0039041 3326 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 89.142 85.125 103110000 0 0 0 4727600 5011300 4643800 0 0 0 12974000 10181000 13824000 0 0 0 0 0 2240600 0 0 0 19188000 18290000 12027000 + 12869 17;8;14;21 12545 242525;242526;242527;242528;242529;242530;242531;242532;242533;242534 148878;148879;148880;148881;148882;148883 148882 6 LLEGELK Unmodified 800.46437 0.46436956 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 1 1 20.333 20.658 1;2 0.0063618 7967 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.793 38.691 1082700000 283580000 301130000 232290000 2327000 3406700 2659200 79686000 72645000 69425000 0 0 0 0 0 0 0 0 0 13128000 9585800 12794000 0 0 0 12870 1486 12546 242535;242536;242537;242538;242539;242540;242541;242542;242543;242544;242545;242546;242547;242548;242549;242550;242551;242552;242553 148884;148885;148886;148887;148888;148889;148890;148891 148891 7 LLEIHSNGGEK Unmodified 1195.6197 0.619701 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 3 3 2 1 2 2 3 4 4 2 2 1 4 2 2 13.735 14.172 2;3 6.4045E-08 3674 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 167.09 133 11051000000 15232000 11447000 14704000 0 0 1091900 14282000 10590000 10850000 970030000 574780000 853400000 6488300 11140000 11828000 2288500000 1535400000 2086000000 16994000 15192000 10534000 885400000 894600000 812670000 12871 1616 12547 242554;242555;242556;242557;242558;242559;242560;242561;242562;242563;242564;242565;242566;242567;242568;242569;242570;242571;242572;242573;242574;242575;242576;242577;242578;242579;242580;242581;242582;242583;242584;242585;242586;242587;242588;242589;242590;242591;242592;242593;242594;242595;242596;242597;242598;242599;242600;242601;242602 148892;148893;148894;148895;148896;148897;148898;148899;148900;148901;148902;148903;148904;148905;148906;148907;148908;148909 148901 18 LLEIIACPVCNGK Unmodified 1485.7684 0.76835585 620 P0AAZ7 ycaR UPF0434 protein YcaR yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.343 37.562 2 5.0692E-08 18120 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 183.57 175.04 295760000 23100000 25136000 23769000 0 0 0 30078000 33705000 32398000 0 2438700 2219000 11042000 10826000 9847100 0 0 0 33906000 30832000 26467000 0 0 0 12872 620 12548 242603;242604;242605;242606;242607;242608;242609;242610;242611;242612;242613;242614;242615;242616 148910;148911;148912;148913;148914;148915;148916;148917;148918 148914 9 LLEIPFNPVYR Unmodified 1359.7551 0.75507227 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.292 48.893 2 2.6308E-06 23813 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.1 146.88 459590000 70927000 63475000 61445000 1139900 1003600 1218400 29969000 31623000 29252000 0 0 0 28691000 26976000 29409000 0 0 0 28272000 28250000 27115000 829090 0 0 12873 88 12549 242617;242618;242619;242620;242621;242622;242623;242624;242625;242626;242627;242628;242629;242630;242631;242632 148919;148920;148921;148922;148923;148924;148925;148926;148927;148928;148929;148930 148923 9 LLELAEK Unmodified 814.48002 0.48001963 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 20.677 21.093 2 0.0092992 8540 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 82.305 0 25993000 7235100 0 0 0 0 0 0 6366400 0 0 0 0 0 4796900 0 0 0 0 0 7594700 0 0 0 0 12874 1083 12550 242633;242634;242635;242636;242637;242638 148931;148932;148933 148933 3 LLELGHQITVVTR Unmodified 1477.8617 0.86166261 1941 P77775 yfcH Epimerase family protein YfcH yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 2 1 1 1 1 1 1 1 32.501 30.946 2;3 0.000202 10616 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 78.763 78.763 221570000 32520000 30016000 27228000 6960900 6322600 5882100 13655000 15638000 18698000 10610000 7010700 7289100 3622600 4954400 4452400 0 0 0 8869000 9345300 8491900 0 0 0 12875 1941 12551 242639;242640;242641;242642;242643;242644;242645;242646;242647;242648;242649;242650;242651;242652;242653;242654;242655;242656;242657;242658;242659;242660;242661;242662;242663;242664;242665;242666 148934;148935;148936;148937;148938;148939;148940;148941;148942 148938 7 LLELTFTEQTTK Unmodified 1422.7606 0.76061116 1879 P76621 csiD Protein CsiD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 40.233 38.548 2 4.9223E-06 18790 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.81 125.76 87903000 15616000 15780000 12111000 0 0 0 11827000 8729100 12269000 0 0 0 1309300 0 1308800 0 0 0 3536500 2430800 2985500 0 0 0 12876 1879 12552 242667;242668;242669;242670;242671;242672;242673;242674;242675;242676;242677 148943;148944;148945 148943 3 LLEMVQLAHLADR Unmodified 1507.8181 0.81808324 1121 P16676 cysA Sulfate/thiosulfate import ATP-binding protein CysA yes yes 0 0 0 By MS/MS 1 43.977 41.972 3 0.045111 20899 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 41.092 38.383 8043900 0 0 0 0 0 0 8043900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12877 1121 12553 242678 148946 148946 0 LLENGANTSFVNR Unmodified 1433.7263 0.72629134 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.837 24.743 2 5.6184E-40 11037 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 273.9 182.59 319690000 0 0 0 9554000 10609000 9270900 12060000 13343000 8972200 16837000 18395000 17334000 11500000 11723000 10300000 4858500 2567900 2917300 33880000 35219000 29275000 19190000 19691000 22188000 12878 215 12554 242679;242680;242681;242682;242683;242684;242685;242686;242687;242688;242689;242690;242691;242692;242693;242694;242695;242696;242697;242698;242699;242700;242701 148947;148948;148949;148950;148951;148952;148953;148954;148955;148956;148957;148958;148959;148960;148961;148962;148963;148964;148965;148966 148958 20 LLENLNADDEHYK Unmodified 1572.742 0.74200098 1441 P36667 wbbL Rhamnosyltransferase WbbL yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 22.368 21.92 3 0.0072206 9380 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.157 58.839 40117000 0 0 0 0 0 0 0 0 0 0 0 0 3050700 3064000 3533700 0 0 0 11835000 10143000 8490700 0 0 0 12879 1441 12555 242702;242703;242704;242705;242706;242707 148967;148968 148967 0 LLEQEMVNFLFEGK Unmodified 1695.8542 0.85419397 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.029 53.573 2 4.3113E-08 25400 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 174.42 167.98 2308500000 259130000 231170000 260050000 4969100 4595500 3915300 164440000 144970000 133610000 7271700 6668000 7297900 160150000 136680000 187690000 0 0 0 178220000 206330000 205480000 2698900 3188900 0 12880 451 12556 242708;242709;242710;242711;242712;242713;242714;242715;242716;242717;242718;242719;242720;242721;242722;242723;242724;242725;242726;242727 148969;148970;148971;148972;148973;148974;148975 148975 2 LLEQTLAWAQQK Unmodified 1427.7773 0.77726428 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 38.81 37.23 2 5.3028E-09 18028 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 198.65 170.63 106650000 36638000 37017000 26609000 1887700 2222400 2273300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12881 48 12557 242728;242729;242730;242731;242732;242733 148976;148977 148977 2 LLESAGIAYTVNQR Unmodified 1533.8151 0.81510635 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.714 31.327 2 2.4331E-14 15096 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 185.18 140.02 244100000 20324000 20901000 15603000 0 0 0 21644000 16899000 16480000 0 0 0 15481000 16746000 15592000 0 0 0 31032000 27012000 26386000 0 0 0 12882 1634 12558 242734;242735;242736;242737;242738;242739;242740;242741;242742;242743;242744;242745 148978;148979;148980;148981;148982;148983;148984;148985;148986;148987;148988;148989 148979 12 LLETAEPHPGK Unmodified 1190.6295 0.62953741 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 13.387 14.215 2;3 1.1327E-05 4349 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.72 135.94 1174000000 197380000 191110000 214880000 0 0 0 102510000 87960000 80792000 1091000 0 0 42138000 45373000 41395000 0 0 0 54031000 58817000 56558000 0 0 0 12883 218 12559 242746;242747;242748;242749;242750;242751;242752;242753;242754;242755;242756;242757;242758;242759;242760;242761;242762;242763;242764;242765;242766;242767;242768;242769;242770 148990;148991;148992;148993;148994;148995;148996;148997;148998;148999;149000;149001;149002;149003;149004 149000 15 LLEVTPR Unmodified 826.49125 0.49125301 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.84 20.97 2 0.0026472 6077 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 111.28 66.667 284390000 10685000 11906000 10199000 3305000 0 4806700 26196000 32658000 31777000 10624000 8561600 9273800 0 19272000 0 0 0 0 32494000 29240000 30055000 3890800 4135200 5308500 12884 717 12560 242771;242772;242773;242774;242775;242776;242777;242778;242779;242780;242781;242782;242783;242784;242785;242786;242787;242788 149005;149006;149007;149008;149009;149010;149011 149010 5 LLEYPDAALWQHQQEMFEAIAASK Unmodified 2788.3531 0.35305156 907 P0AF26 narJ Nitrate reductase molybdenum cofactor assembly chaperone NarJ yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.616 52.256 3 0.024656 25714 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 40.756 38.442 220840000 0 22986000 22578000 0 5283400 5652500 0 0 0 0 0 0 31522000 26379000 0 0 0 0 0 53451000 52988000 0 0 0 12885 907 12561 242789;242790;242791;242792;242793;242794;242795;242796 149012 149012 1 LLFEGGYPVLAK Unmodified 1305.7333 0.7332742 1021 P0AGJ2 trmH tRNA (guanosine(18)-2'-O)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.033 43.83 2 7.4905E-05 21369 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.11 97.46 190420000 19172000 18023000 18269000 0 0 0 7740500 8355300 7174200 0 0 0 9888900 9989900 12093000 8900000 4838400 4124900 21701000 19189000 15331000 2695400 2931100 0 12886 1021 12562 242797;242798;242799;242800;242801;242802;242803;242804;242805;242806;242807;242808;242809;242810;242811;242812;242813 149013;149014;149015;149016;149017;149018;149019;149020;149021;149022;149023 149017 11 LLFLDEAAR Unmodified 1046.576 0.57604528 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.406 39.547 2 0.0002835 15551 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 119.29 107.64 500860000 32280000 34651000 27393000 2487800 2067700 1767300 36671000 35256000 35823000 5936600 6746700 5561500 35580000 31189000 32134000 0 0 0 55930000 51133000 49577000 5673000 6473200 6532700 12887 1197 12563 242814;242815;242816;242817;242818;242819;242820;242821;242822;242823;242824;242825;242826;242827;242828;242829;242830;242831;242832;242833;242834;242835 149024;149025;149026;149027;149028;149029;149030;149031;149032 149028 5 LLFMGNEFAQGR Unmodified 1381.6813 0.6812554 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 43.67 42.097 2 0.00030058 19782 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.898 82.447 70212000 0 0 0 0 0 0 13194000 12313000 15163000 0 0 0 6349700 5446400 5274500 0 0 0 3551000 4628000 4292300 0 0 0 12888 169 12564 242836;242837;242838;242839;242840;242841;242842;242843;242844 149033 149033 1 LLFQGVQR Unmodified 959.55525 0.55525025 1242 P24203 yjiA Uncharacterized GTP-binding protein YjiA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 28.112 26.793 2 8.8548E-05 12557 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.41 98.545 582950000 79215000 0 0 0 616050 763940 83019000 78331000 80203000 0 0 0 0 0 0 0 0 0 87411000 93916000 79471000 0 0 0 12889 1242 12565 242845;242846;242847;242848;242849;242850;242851;242852;242853 149034;149035;149036;149037;149038 149035 5 LLFSQDDIK Unmodified 1077.5706 0.57062555 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.197 31.757 2 0.00028369 15107 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.27 86.382 1020200000 75130000 70944000 57842000 0 0 0 83443000 74760000 74154000 0 0 0 90713000 92813000 85086000 0 0 0 108610000 103600000 103070000 0 0 0 12890 558 12566 242854;242855;242856;242857;242858;242859;242860;242861;242862;242863;242864;242865 149039;149040;149041;149042;149043;149044 149040 6 LLGDNTDGVGLLSDLER Unmodified 1785.9109 0.91085723 1114 P15770 aroE Shikimate dehydrogenase (NADP(+)) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 52.175 50.943 2 3.0739E-25 24892 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 224.42 208.53 249220000 26718000 33720000 26078000 0 0 0 0 17787000 16257000 0 0 0 0 20745000 19132000 0 0 0 29745000 30090000 28951000 0 0 0 12891 1114 12567 242866;242867;242868;242869;242870;242871;242872;242873;242874;242875 149045;149046;149047;149048 149047 4 LLGEERPFR Unmodified 1115.6087 0.60874239 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 19.74 20.003 2;3 8.0377E-05 7719 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.89 100.23 3127100000 295480000 242370000 223380000 29075000 31631000 35822000 234460000 233700000 220940000 73408000 54613000 61448000 212810000 220690000 196460000 20089000 15661000 17859000 222770000 206330000 207610000 24164000 21486000 24837000 12892 899 12568 242876;242877;242878;242879;242880;242881;242882;242883;242884;242885;242886;242887;242888;242889;242890;242891;242892;242893;242894;242895;242896;242897;242898;242899;242900;242901;242902;242903;242904;242905;242906;242907;242908;242909;242910;242911;242912;242913;242914;242915;242916;242917;242918;242919;242920;242921;242922;242923 149049;149050;149051;149052;149053;149054;149055;149056;149057;149058;149059;149060;149061;149062;149063;149064;149065;149066;149067;149068;149069;149070;149071;149072;149073;149074;149075;149076;149077;149078;149079;149080;149081;149082;149083;149084;149085;149086;149087;149088;149089 149070 41 LLGETLLR Unmodified 913.55967 0.55966693 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.423 32.975 2 1.2805E-06 11691 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 193.98 109.62 1174600000 102520000 100550000 78967000 1858900 1915600 1874200 20100000 17239000 16488000 2133400 2215500 1878700 0 11715000 0 268000000 225340000 276830000 12791000 15478000 15550000 0 1150700 0 12893 733 12569 242924;242925;242926;242927;242928;242929;242930;242931;242932;242933;242934;242935;242936;242937;242938;242939;242940;242941;242942;242943 149090;149091;149092;149093;149094;149095;149096 149090 4 LLGFSGFR Unmodified 895.49159 0.49158736 745 P0ACS7 rpiR HTH-type transcriptional regulator RpiR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.262 38.494 2 0.00083171 19141 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.29 121.29 60001000 5545800 4354800 4482300 482690 231750 0 5623600 5217000 5370400 0 580970 591660 4281100 4217800 3638500 0 0 0 4304800 5605900 5472100 0 0 0 12894 745 12570 242944;242945;242946;242947;242948;242949;242950;242951;242952;242953;242954;242955;242956;242957;242958;242959 149097;149098;149099;149100;149101;149102;149103 149098 7 LLGGPQAGIIVGK Unmodified 1221.7445 0.74450759 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.723 32.283 2 0.039943 15178 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 51.445 46.994 252850000 26663000 18126000 23834000 0 0 0 22916000 22594000 21137000 0 0 0 22169000 18851000 20631000 0 0 0 19152000 19806000 16971000 0 0 0 12895 389 12571 242960;242961;242962;242963;242964;242965;242966;242967;242968;242969;242970;242971 149104;149105 149105 0 LLGIEPK Unmodified 768.47454 0.47454032 1668 P64429 ypfJ Uncharacterized protein YpfJ yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.858 23.857 2 0.12118 7769 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 50.025 29.47 140390000 10722000 9077600 10580000 1812500 1905700 1662800 12956000 13506000 13868000 0 0 0 8295300 6042600 7874700 0 0 0 16700000 12117000 13268000 0 0 0 12896 1668 12572 242972;242973;242974;242975;242976;242977;242978;242979;242980;242981;242982;242983;242984;242985;242986 149106 149106 1 LLGLDYPGGPLLSK Unmodified 1441.8181 0.81806646 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.35 49.13 2 0.00019631 19693 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 101.93 96.778 369280000 14547000 13974000 16101000 2323900 1931900 2672100 24218000 27903000 21649000 6498400 7136900 5816300 27109000 24159000 28916000 2424900 2687300 2196100 43250000 42831000 40138000 3616500 3155200 4024600 12897 121 12573 242987;242988;242989;242990;242991;242992;242993;242994;242995;242996;242997;242998;242999;243000;243001;243002;243003;243004;243005;243006;243007;243008;243009;243010 149107;149108;149109;149110;149111;149112;149113;149114;149115;149116;149117 149108 10 LLGLEIGADDYICKPYSPR Unmodified 2179.0983 0.098340421 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 45.227 43.754 3 4.4406E-07 21319 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 104.03 100.93 147000000 0 0 0 0 0 0 19173000 18502000 20075000 0 0 0 12229000 8710000 12254000 0 0 0 17830000 21989000 16237000 0 0 0 12898 1728 12574 243011;243012;243013;243014;243015;243016;243017;243018;243019 149118;149119;149120;149121;149122;149123 149121 5 LLGLEPPQFR Unmodified 1168.6604 0.66044361 764 P0AD12 yeeZ Protein YeeZ yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.401 41.87 2 1.0736E-05 20870 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.71 145.77 355530000 36071000 30719000 30965000 321830 346140 0 37500000 35817000 32147000 0 0 0 21057000 22574000 21507000 0 0 0 31952000 26529000 28025000 0 0 0 12899 764 12575 243020;243021;243022;243023;243024;243025;243026;243027;243028;243029;243030;243031;243032;243033 149124;149125;149126;149127;149128;149129;149130;149131;149132;149133 149124 10 LLGLFQNR Unmodified 959.55525 0.55525025 929 P0AFD4 nuoH NADH-quinone oxidoreductase subunit H yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.534 35.967 2 7.4864E-05 17260 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 166.13 101.26 354430000 13312000 13557000 10774000 3895600 4017300 3161400 0 46904000 0 10761000 7836900 9738900 28517000 20856000 23623000 2628600 2801400 2362000 46830000 41890000 42862000 3787400 7563400 6748900 12900 929 12576 243034;243035;243036;243037;243038;243039;243040;243041;243042;243043;243044;243045;243046;243047;243048;243049;243050;243051;243052;243053;243054;243055 149134;149135;149136;149137;149138;149139;149140 149137 7 LLGNELVAINQYFLHAR Unmodified 1970.0738 0.073780651 650 P0ABD3 bfr Bacterioferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 1 2 2 2 2 52.603 51.316 2;3 4.8544E-33 24893 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 248.42 233.55 1527800000 226580000 225700000 202740000 0 1439400 1562300 135710000 145040000 123490000 23697000 22084000 14193000 56529000 52134000 51815000 0 0 0 77862000 87370000 79826000 0 0 0 12901 650 12577 243056;243057;243058;243059;243060;243061;243062;243063;243064;243065;243066;243067;243068;243069;243070;243071;243072;243073;243074;243075;243076;243077;243078;243079;243080;243081;243082;243083 149141;149142;149143;149144;149145;149146;149147;149148;149149;149150;149151;149152;149153;149154 149151 14 LLGPDVGFDSINDRPMAEELSK Unmodified 2402.1788 0.17877559 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.085 42.57 3 1.7178E-10 20844 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.8 116.37 883640000 132840000 148110000 136220000 0 0 0 93505000 64763000 62266000 0 0 0 66068000 54627000 49232000 0 0 0 21356000 24373000 30290000 0 0 0 12902 427 12578 243084;243085;243086;243087;243088;243089;243090;243091;243092;243093;243094;243095 149155;149156;149157;149158;149159;149160;149161;149162;149163 149158 9 LLGPIVPGTVVPNGVR Unmodified 1586.9508 0.95081197 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 44.776 43.321 2 3.6999E-08 21096 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.55 109.74 141770000 47694000 44569000 48491000 560230 450910 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12903 1888 12579 243096;243097;243098;243099;243100 149164;149165 149164 2 LLGSDAR Unmodified 730.39735 0.39735263 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 12.09 12.902 2 0.09748 3555 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 63.287 0 953100000 551020000 80054000 77305000 0 0 0 0 0 113900000 0 0 0 111240000 0 19586000 0 0 0 0 0 0 0 0 0 12904 1262 12580 243101;243102;243103;243104;243105;243106 149166;149167 149166 0 LLGSFNHGSMANAMPQALGAQATEPER Unmodified 2797.3276 0.32758186 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.414 35.581 3 9.6391E-16 17229 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 135.8 135.52 488620000 67415000 73775000 62466000 11693000 14013000 14792000 47842000 52241000 49212000 6870500 6794600 7267600 7735400 9366300 7758500 0 0 0 18189000 17464000 13724000 0 0 0 12905 147 12581 243107;243108;243109;243110;243111;243112;243113;243114;243115;243116;243117;243118;243119;243120;243121;243122;243123;243124 149168;149169;149170;149171;149172;149173;149174;149175;149176;149177 149174 10 LLGTLIHLR Unmodified 1034.66 0.66004968 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.959 31.553 2 0.0001001 10739 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 136.11 136.11 136830000 7426100 7857400 6517400 1102700 1102100 0 12525000 8754100 6929500 2685400 2661500 1970200 5610800 3587100 3605800 18473000 9693600 14642000 6612200 7343200 6000400 0 0 1730900 12906 222 12582 243125;243126;243127;243128;243129;243130;243131;243132;243133;243134;243135;243136;243137;243138;243139;243140;243141;243142;243143;243144;243145 149178;149179;149180;149181;149182 149178 4 LLGTQYISK Unmodified 1021.5808 0.5807963 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.696 24.732 2 0.00077595 9279 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 101.54 74.405 722470000 53996000 40266000 46153000 11201000 0 0 0 0 0 38942000 39989000 34685000 47047000 52673000 45277000 4945000 5351900 5789600 96820000 94271000 90742000 0 14319000 0 12907 826 12583 243146;243147;243148;243149;243150;243151;243152;243153;243154;243155;243156;243157;243158;243159;243160;243161;243162 149183;149184;149185;149186;149187;149188;149189;149190;149191;149192;149193;149194;149195;149196 149185 14 LLGVDVGGIGDAHGR Unmodified 1434.7579 0.75792582 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 2 2 2 2 2 32.024 30.622 2;3 9.7148E-07 14470 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.51 106.71 481580000 17731000 16251000 14242000 0 0 0 42685000 49081000 42537000 0 0 851140 45047000 49307000 43877000 0 0 0 52639000 56887000 50449000 0 0 0 12908 180 12584 243163;243164;243165;243166;243167;243168;243169;243170;243171;243172;243173;243174;243175;243176;243177;243178;243179;243180;243181;243182;243183;243184 149197;149198;149199;149200;149201;149202;149203;149204;149205;149206;149207;149208;149209;149210 149200 9 LLGVNEVR Unmodified 898.52362 0.52361577 347 P0A7I7 ribA GTP cyclohydrolase-2 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 23.596 22.952 2 0.0015887 9465 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 107.59 87.073 540220000 6717300 94105000 82656000 0 0 0 0 0 0 0 0 0 67350000 70554000 61087000 0 0 0 78062000 79689000 0 0 0 0 12909 347 12585 243185;243186;243187;243188;243189;243190;243191;243192 149211;149212;149213;149214;149215;149216 149216 6 LLHAMGCEVTAFSSNPAK Unmodified 1931.9234 0.92335294 1296 P27250 ahr Aldehyde reductase Ahr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 1 1 1 28.761 27.524 2;3 5.8737E-37 12577 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 243.7 234.49 402040000 78628000 86491000 64527000 0 0 0 29628000 27205000 30117000 0 0 0 14741000 16201000 14659000 0 0 0 8696500 15302000 15841000 0 0 0 12910 1296 12586 243193;243194;243195;243196;243197;243198;243199;243200;243201;243202;243203;243204;243205;243206;243207;243208 149217;149218;149219;149220;149221;149222;149223;149224;149225;149226;149227;149228;149229;149230;149231;149232 149229 16 LLHDIEK Unmodified 866.48617 0.48616764 1454 P37005 lasT Uncharacterized tRNA/rRNA methyltransferase LasT yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.488 13.296 2 0.011962 3967 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.265 72.057 64161000 4916200 6779500 5719600 0 0 0 7509700 5632900 7579000 0 0 0 6130900 0 5115800 0 0 0 8832600 5945000 0 0 0 0 12911 1454 12587 243209;243210;243211;243212;243213;243214;243215;243216;243217;243218 149233;149234 149234 2 LLHFFMTHPER Unmodified 1426.718 0.71797526 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 2 2 1 1 1 2 1 1 1 25.828 24.826 2;3;4 0.00019528 10503 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 105.1 94.815 1466700000 7776700 9187500 7398300 878880 640860 543270 121430000 132900000 130810000 4111500 3419600 3589400 124780000 188570000 166930000 7693500 9442700 7613100 180690000 184510000 157670000 5626200 5418000 5112400 12912 946 12588 243219;243220;243221;243222;243223;243224;243225;243226;243227;243228;243229;243230;243231;243232;243233;243234;243235;243236;243237;243238;243239;243240;243241;243242;243243;243244;243245;243246;243247;243248;243249 149235;149236;149237;149238;149239;149240;149241;149242;149243;149244;149245;149246;149247;149248;149249;149250;149251;149252;149253;149254;149255 149255 19 LLHGESK Unmodified 782.42865 0.42865276 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 7.1186 7.9435 2 0.0035973 1720 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.32 44.602 4083400000 1658500000 1358500000 24987000 5549200 5376700 5097200 275700 1862700 367750000 0 0 0 108610000 99996000 127680000 0 0 3168300 108350000 94844000 112860000 0 0 0 12913 517 12589 243250;243251;243252;243253;243254;243255;243256;243257;243258;243259;243260;243261;243262;243263;243264;243265;243266;243267;243268 149256;149257;149258;149259;149260;149261;149262;149263;149264;149265;149266;149267;149268;149269;149270;149271;149272;149273;149274;149275 149265 20 LLHTMLR Unmodified 882.51094 0.5109426 707 P0AC81 gloA Lactoylglutathione lyase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.972 16.787 2 0.00029567 5857 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.53 158.53 1526900000 99112000 132130000 144770000 0 0 0 129630000 146650000 161930000 0 0 0 100960000 116080000 105990000 0 0 0 144870000 125320000 119500000 0 0 0 12914 707 12590 243269;243270;243271;243272;243273;243274;243275;243276;243277;243278;243279;243280 149276;149277;149278;149279;149280;149281;149282;149283 149278 8 LLIDDLSFSIPK Unmodified 1359.765 0.76496826 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.181 52.754 2 0.00011034 24847 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 91.549 77.431 2446600000 239710000 239590000 244620000 4104200 6951600 5171800 165160000 179000000 177520000 0 4143600 8395400 205320000 187790000 155290000 0 0 0 219940000 201870000 193250000 4087500 4673200 0 12915 561 12591 243281;243282;243283;243284;243285;243286;243287;243288;243289;243290;243291;243292;243293;243294;243295;243296;243297;243298;243299;243300 149284;149285;149286;149287;149288;149289;149290;149291;149292;149293;149294;149295;149296;149297 149296 14 LLIDICGGEAGPVIDITNEATLPK Unmodified 2508.3145 0.31454079 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.512 53.064 2 4.7968E-30 25253 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 185.14 184.2 611180000 74517000 61053000 54696000 0 0 0 32072000 35208000 23256000 0 0 0 61930000 49333000 44151000 0 0 0 66045000 59640000 49281000 0 0 0 12916 161 12592 243301;243302;243303;243304;243305;243306;243307;243308;243309;243310;243311;243312 149298;149299;149300;149301;149302;149303;149304;149305;149306 149304 9 LLIDPCAR Unmodified 956.51134 0.51133653 1104 P15067 glgX Glycogen debranching enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 28.087 26.99 2 0.0035689 12436 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.041 81.827 57903000 12577000 10927000 8886700 0 0 0 0 0 0 0 0 0 5347200 0 0 0 0 0 7639700 7256600 5268000 0 0 0 12917 1104 12593 243313;243314;243315;243316;243317;243318;243319 149307;149308;149309;149310;149311;149312;149313 149310 7 LLIEEEAAK Unmodified 1014.5597 0.55972651 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.959 22.35 2 0.0002568 7474 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 121.62 101.98 2876400000 180450000 189010000 198600000 19619000 21318000 19449000 232980000 235200000 231300000 52162000 46386000 65507000 215890000 175240000 187500000 10663000 10671000 10051000 225480000 209580000 219990000 45724000 37505000 36098000 12918 245 12594 243320;243321;243322;243323;243324;243325;243326;243327;243328;243329;243330;243331;243332;243333;243334;243335;243336;243337;243338;243339;243340;243341;243342;243343 149314;149315;149316;149317;149318;149319;149320;149321;149322;149323;149324;149325;149326;149327;149328;149329;149330;149331;149332;149333;149334;149335;149336 149324 23 LLIEPTGLGHPK Unmodified 1273.7394 0.73942221 1407 P33030 yeiR Uncharacterized protein YeiR yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.215 24.936 3 0.00031755 11080 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 81.525 66.963 300200000 0 0 0 1762100 1427200 0 31323000 35991000 34702000 0 2299300 2206000 22642000 18008000 19956000 0 0 0 44037000 45417000 36985000 1076600 2366400 0 12919 1407 12595 243344;243345;243346;243347;243348;243349;243350;243351;243352;243353;243354;243355;243356;243357;243358 149337;149338;149339;149340;149341;149342;149343;149344 149343 7 LLIGPEGGLSADEIAMTAR Unmodified 1912.9928 0.99281272 1029 P0AGL7 rsmE Ribosomal RNA small subunit methyltransferase E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.846 47.515 2 2.3755E-10 22963 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 152.99 152.95 78999000 9802500 10952000 7079900 0 0 0 6635600 6733600 5833100 0 0 0 4321600 3428800 4414000 0 0 0 6549100 6774200 6474500 0 0 0 12920 1029 12596 243359;243360;243361;243362;243363;243364;243365;243366;243367;243368;243369;243370 149345 149345 1 LLILDEPTAGVDIELR Unmodified 1765.9826 0.98256561 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 53.098 51.683 2 2.4816E-06 20745 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 98.407 92.684 14935000 0 0 0 0 0 0 0 0 0 0 3292700 2831800 0 0 0 0 0 0 0 8810800 0 0 0 0 12921 1447 12597 243371;243372;243373 149346 149346 0 LLILGSGPAGYTAAVYAAR Unmodified 1863.0254 0.025433475 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 2 1 1 1 1 2 2 2 2 2 2 49.05 47.746 2;3 6.7347E-07 23078 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 112.51 112.51 189450000 23233000 21895000 18452000 1045200 0 481710 10401000 9074600 6029600 0 0 0 17296000 15372000 12670000 0 0 0 17278000 16892000 19330000 0 0 0 12922 543 12598 243374;243375;243376;243377;243378;243379;243380;243381;243382;243383;243384;243385;243386;243387;243388;243389;243390;243391;243392;243393;243394;243395;243396;243397 149347;149348;149349 149347 1 LLINDIIR Unmodified 968.60187 0.6018661 2003 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 3 1 2 2 1 1 1 1 1 1 1 1 44.307 42.829 2 0.00051593 21009 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.66 27.07 177160000 34536000 27512000 31489000 0 0 0 12532000 21470000 20749000 0 1140700 0 4642400 3387000 3107600 0 0 814420 4931800 5735300 5116000 0 0 0 + 12923 2003 12599 243398;243399;243400;243401;243402;243403;243404;243405;243406;243407;243408;243409;243410;243411;243412;243413;243414;243415;243416;243417 149350;149351;149352;149353;149354 149352 5 LLINGELVSGEGEK Unmodified 1456.7773 0.77732386 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 33.589 32.234 2 2.0709E-07 15387 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.3 131.72 391050000 137700000 121470000 114220000 0 0 0 0 0 10032000 0 0 0 0 0 0 0 0 0 0 0 7629400 0 0 0 12924 1925 12600 243418;243419;243420;243421;243422 149355;149356;149357;149358 149356 3 LLISGDVIFK Unmodified 1103.659 0.65904662 1783 P75849 ycbL Uncharacterized protein YcbL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.457 43.877 2 0.0023399 21673 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.474 61.916 265060000 18468000 16846000 14280000 1741900 1952000 1888900 36931000 29476000 27172000 0 1237100 1294100 17867000 14807000 14647000 0 0 0 23636000 22337000 17916000 1217200 1348300 0 12925 1783 12601 243423;243424;243425;243426;243427;243428;243429;243430;243431;243432;243433;243434;243435;243436;243437;243438;243439;243440;243441 149359;149360;149361;149362;149363;149364;149365;149366;149367;149368;149369;149370;149371;149372 149368 11 LLITGDRPPR Unmodified 1136.6666 0.66659162 1760 P69931 hda DnaA regulatory inactivator Hda yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 17.35 18.083 3 3.1998E-05 6642 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.3 107.06 76616000 10448000 8128600 10893000 0 0 0 0 0 3041900 0 0 0 4584600 4940500 4743100 0 0 0 12824000 8725100 8285900 0 0 0 12926 1760 12602 243442;243443;243444;243445;243446;243447;243448;243449;243450;243451 149373 149373 1 LLIVVTSTQGEGEPPEEAVALHK Unmodified 2416.285 0.28495522 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.696 37.05 3 3.171E-10 17931 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.2 121.66 1231100000 108410000 92201000 88348000 0 0 0 136240000 100070000 96994000 4078300 4145400 4784000 80589000 60747000 72775000 0 1106100 986760 125890000 127850000 115090000 10832000 0 0 12927 1503 12603 243452;243453;243454;243455;243456;243457;243458;243459;243460;243461;243462;243463;243464;243465;243466;243467;243468;243469 149374;149375;149376;149377;149378;149379;149380;149381;149382;149383;149384;149385;149386;149387;149388;149389 149385 16 LLKDENEYQAMSR Unmodified 1595.7614 0.76135622 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 1 2 1 2 1 17.463 18.121 2;3 1.2163E-06 6294 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 141.88 129.26 104030000 11710000 0 3601000 0 0 0 18731000 4746100 20534000 0 0 0 4375000 5238000 15891000 0 0 0 6294300 7545800 5368700 0 0 0 12928 1306 12604 243470;243471;243472;243473;243474;243475;243476;243477;243478;243479;243480;243481;243482;243483;243484;243485 149390;149391;149392;149393;149394;149395;149396;149397;149398 149396 9 LLKEEGYSFDFAYTSVLK Unmodified 2109.067 0.067023518 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 46.829 45.428 2;3 2.5785E-36 22154 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 236.17 222.09 2332900000 177540000 169640000 147290000 1940800 2519600 0 251760000 275450000 233110000 0 0 0 157630000 134120000 119850000 0 0 0 224190000 254240000 181670000 0 0 1968800 12929 1652 12605 243486;243487;243488;243489;243490;243491;243492;243493;243494;243495;243496;243497;243498;243499;243500;243501;243502;243503;243504;243505;243506;243507;243508;243509;243510;243511;243512 149399;149400;149401;149402;149403;149404;149405;149406;149407;149408;149409;149410;149411;149412;149413;149414;149415;149416;149417;149418;149419;149420;149421;149422;149423;149424;149425;149426;149427;149428;149429;149430;149431 149408 32 LLKEYLPASYHEGSK Unmodified 1733.8988 0.89883598 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 21.531 21.32 3;4 0.0038955 6349 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 58.814 55.846 126250000 0 0 0 17664000 21058000 18850000 0 0 0 13230000 6552800 11235000 0 0 0 0 0 0 0 0 0 10114000 14043000 13505000 12930 548 12606 243513;243514;243515;243516;243517;243518;243519;243520;243521;243522;243523;243524;243525;243526;243527;243528;243529 149432;149433;149434;149435;149436;149437;149438;149439;149440;149441;149442;149443;149444 149442 13 LLKEYLPASYHEGSKNPVAR Unmodified 2271.2012 0.20116601 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 1 2 20.887 21.159 4;5 0.099373 6165 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 29.126 25.685 22768000 0 0 0 9352900 3285900 10130000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12931 548 12607 243530;243531;243532;243533;243534 149445;149446;149447;149448;149449 149448 5 LLKPYVGGFPLHNPQDYVYSK Unmodified 2434.2685 0.26851729 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 37.757 36.083 3;4 0.00010467 17488 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.315 70.807 484160000 21698000 21950000 19365000 0 0 0 59851000 56992000 64559000 0 0 0 43920000 38518000 40416000 0 0 0 34077000 45895000 36916000 0 0 0 12932 1961 12608 243535;243536;243537;243538;243539;243540;243541;243542;243543;243544;243545;243546;243547;243548;243549;243550;243551;243552;243553;243554;243555;243556;243557;243558 149450;149451;149452;149453;149454;149455;149456;149457;149458;149459;149460;149461 149453 12 LLLAGVMLR Unmodified 984.61541 0.61540767 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.223 43.808 2 4.0321E-05 21130 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.51 151.51 931880000 67274000 63373000 54948000 0 0 0 84518000 80706000 77757000 0 0 0 73990000 69938000 76962000 0 0 0 89889000 99796000 92726000 0 0 0 12933 720 12609 243559;243560;243561;243562;243563;243564;243565;243566;243567;243568;243569;243570 149462;149463;149464;149465;149466;149467;149468;149469;149470;149471;149472;149473 149467 12 LLLAQGR Unmodified 769.48102 0.48102268 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.123 19.437 2 0.0010757 7582 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 137.2 90.157 1086700000 58810000 54079000 54646000 3526500 3301600 0 116850000 136090000 112160000 7817600 7082000 6274100 120440000 1977800 0 3051900 2191200 0 132420000 132390000 119480000 4040100 4877300 5187500 12934 1117 12610 243571;243572;243573;243574;243575;243576;243577;243578;243579;243580;243581;243582;243583;243584;243585;243586;243587;243588;243589;243590;243591 149474;149475;149476;149477;149478;149479 149477 5 LLLAVIDK Unmodified 883.57425 0.57425436 387 P0A812 ruvB Holliday junction ATP-dependent DNA helicase RuvB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.642 35.851 2 0.039653 14141 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 61.962 30.673 127400000 12611000 10120000 9493600 734600 656400 624840 13183000 14657000 11169000 0 2459800 2907800 6850000 6983000 6097400 0 0 0 10632000 8586200 9087100 548310 0 0 12935 387 12611 243592;243593;243594;243595;243596;243597;243598;243599;243600;243601;243602;243603;243604;243605;243606;243607;243608;243609;243610 149480;149481;149482;149483 149481 4 LLLDALR Unmodified 812.51199 0.51198846 1600 P52061 rdgB dITP/XTP pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.634 36.96 2 0.00023343 17889 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 163.34 29.353 1099400000 59526000 48016000 43759000 0 0 0 101690000 91340000 93706000 0 0 0 81757000 80342000 89615000 0 0 0 156250000 133660000 119780000 0 0 0 12936 1600 12612 243611;243612;243613;243614;243615;243616;243617;243618;243619;243620;243621;243622 149484;149485;149486;149487;149488;149489;149490;149491;149492;149493;149494;149495 149488 12 LLLDPGFGFGK Unmodified 1162.6386 0.63864553 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.386 49.005 2 0.0007358 23775 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 85.731 81.528 600440000 43178000 41531000 40789000 0 0 0 49917000 50952000 51647000 0 0 0 35852000 39625000 34103000 0 0 0 75859000 70073000 66915000 0 0 0 12937 691 12613 243623;243624;243625;243626;243627;243628;243629;243630;243631;243632;243633;243634 149496;149497;149498;149499 149499 1 LLLEKPDMLLLDEPTNHLDAESVAWLER Unmodified 3259.6799 0.67986501 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 53.058 51.641 3;4 2.1206E-80 25687 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 280.47 275.31 6055300000 559660000 560680000 613870000 11333000 14089000 14266000 365110000 401500000 412250000 19202000 14744000 14951000 452030000 489220000 441440000 0 0 0 540110000 528500000 575800000 0 13448000 13034000 12938 561 12614 243635;243636;243637;243638;243639;243640;243641;243642;243643;243644;243645;243646;243647;243648;243649;243650;243651;243652;243653;243654;243655;243656;243657;243658;243659;243660;243661;243662;243663;243664;243665;243666 149500;149501;149502;149503;149504;149505;149506;149507;149508;149509;149510;149511;149512;149513;149514;149515;149516;149517;149518;149519;149520;149521;149522;149523;149524;149525;149526;149527 149501 28 LLLETMR Unmodified 874.49462 0.49462383 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.381 28.086 2 0.00029567 12922 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 158.53 154.86 2036700000 149780000 129840000 128270000 884570 472460 757550 197020000 209310000 202260000 0 0 0 166810000 156970000 160010000 0 0 0 191840000 192110000 150320000 0 0 0 12939 702 12615 243667;243668;243669;243670;243671;243672;243673;243674;243675;243676;243677;243678;243679;243680;243681 149528;149529;149530;149531;149532;149533;149534;149535;149536;149537;149538;149539 149533 12 LLLGGEK Unmodified 728.44324 0.44324019 1825 P76149 sad Succinate semialdehyde dehydrogenase [NAD(P)+] Sad yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 18.144 18.897 2 0.10298 7049 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 53.351 3.3269 78412000 0 37938000 27486000 0 0 0 0 0 0 0 0 0 0 6952700 6035400 0 0 0 0 0 0 0 0 0 12940 1825 12616 243682;243683;243684;243685 149540;149541 149540 2 LLLISSSEVGQR Unmodified 1300.7351 0.73506511 1523 P39315 qorB Quinone oxidoreductase 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.287 32.839 2 1.4266E-11 16096 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.25 170.72 263170000 28821000 29881000 26011000 0 0 0 33448000 33369000 26295000 0 0 0 11183000 13608000 13677000 0 0 0 17169000 14692000 15017000 0 0 0 12941 1523 12617 243686;243687;243688;243689;243690;243691;243692;243693;243694;243695;243696;243697 149542;149543;149544;149545;149546 149542 3 LLLLDESLSALDYK Unmodified 1591.8709 0.87088989 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.468 53.033 2 1.6214E-05 26005 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.353 96.83 214010000 10904000 8993800 8570300 1992400 4088100 3339500 12814000 10494000 8162600 11715000 3911600 4057800 22478000 15256000 17787000 0 0 0 17640000 16441000 17517000 6225000 6328100 5297800 12942 1754 12618 243698;243699;243700;243701;243702;243703;243704;243705;243706;243707;243708;243709;243710;243711;243712;243713;243714;243715;243716;243717;243718 149547;149548 149547 1 LLLLTDQK Unmodified 942.57498 0.57498264 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 31.5 30.068 2 8.8899E-05 13493 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 163.34 153.83 691850000 76802000 72091000 59824000 0 0 0 59463000 53494000 61112000 0 1370100 0 39260000 40083000 43189000 0 0 0 65545000 58497000 61121000 0 0 0 12943 328 12619 243719;243720;243721;243722;243723;243724;243725;243726;243727;243728;243729;243730;243731 149549;149550;149551;149552;149553;149554;149555;149556;149557;149558;149559;149560 149559 12 LLLPIPR Unmodified 820.55346 0.55345934 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.365 38.501 2 0.00084899 19229 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143.22 91.416 321240000 13166000 9327700 9832700 4419500 4692500 4473700 38891000 30140000 31190000 6758400 8271200 9038500 19518000 17499000 13365000 0 0 0 30294000 27811000 27844000 4564300 5565800 4575400 12944 717 12620 243732;243733;243734;243735;243736;243737;243738;243739;243740;243741;243742;243743;243744;243745;243746;243747;243748;243749;243750;243751;243752 149561;149562;149563;149564;149565;149566;149567;149568;149569;149570;149571;149572;149573;149574;149575;149576;149577;149578;149579;149580;149581 149564 21 LLLSEACPLILDYHVALDNAR Unmodified 2395.257 0.25696633 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 1 1 1 52.729 51.484 2;3;4 8.579E-53 24951 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 304.03 302.45 16831000000 1639200000 1754100000 1473400000 9594800 9075700 10551000 1214300000 1067000000 1058900000 9257500 6804500 9394100 1445100000 1249100000 1317100000 8011700 6135800 6983700 1517700000 1514800000 1489300000 5857600 4110600 4870800 12945 333 12621 243753;243754;243755;243756;243757;243758;243759;243760;243761;243762;243763;243764;243765;243766;243767;243768;243769;243770;243771;243772;243773;243774;243775;243776;243777;243778;243779;243780;243781;243782;243783;243784;243785;243786;243787;243788;243789;243790;243791;243792;243793;243794;243795;243796;243797;243798;243799;243800 149582;149583;149584;149585;149586;149587;149588;149589;149590;149591;149592;149593;149594;149595;149596;149597;149598;149599;149600;149601;149602;149603;149604;149605;149606;149607;149608;149609;149610;149611;149612;149613;149614;149615;149616;149617 149597 34 LLLTNPLGSTELELNAQPGNVQLVDNK Unmodified 2889.5448 0.54475173 1638 P61320 lolB Outer-membrane lipoprotein LolB yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 53.734 52.344 3 0.069108 19153 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 33.263 31.04 21267000 0 0 0 0 3196400 0 0 0 0 0 0 0 0 0 0 0 0 0 8059600 5777700 4233100 0 0 0 12946 1638 12622 243801;243802;243803;243804 149618 149618 1 LLLVTPR Unmodified 810.53272 0.5327239 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.306 28.019 2 0.00080871 12776 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 144.29 135.61 582110000 123760000 121920000 152350000 240060 211070 0 13558000 17785000 13926000 0 0 0 19956000 18284000 20096000 0 0 0 25316000 26219000 28488000 0 0 0 12947 1107 12623 243805;243806;243807;243808;243809;243810;243811;243812;243813;243814;243815;243816;243817;243818 149619;149620;149621;149622;149623;149624;149625;149626;149627 149627 9 LLMAIGEPVMVDTAQEPR Unmodified 1969.0013 0.0012689135 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 1 2 2 2 2 48.43 47.091 2;3 1.7549E-22 22898 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 194.7 185.98 1176000000 271910000 233270000 224540000 2052000 3683100 0 98685000 95277000 88511000 0 0 0 31178000 16145000 29032000 0 0 0 27238000 27613000 26861000 0 0 0 12948 757 12624 243819;243820;243821;243822;243823;243824;243825;243826;243827;243828;243829;243830;243831;243832;243833;243834;243835;243836;243837;243838;243839;243840;243841;243842;243843;243844 149628;149629;149630;149631;149632;149633;149634;149635;149636;149637;149638;149639;149640 149637 13 LLMEETGIPVVVAEDPLTCVAR Unmodified 2411.244 0.24401838 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 2 2 2 3 3 2 2 2 2 2 3 1 1 1 2 2 2 2 2 2 54.712 53.359 2;3 1.0104E-21 25952 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 161.55 158.91 1981000000 156850000 149120000 142840000 12258000 24001000 23415000 80533000 79200000 84521000 85771000 89831000 86166000 117560000 108570000 88782000 31564000 33908000 28799000 164080000 132490000 123510000 39157000 49193000 48855000 12949 564 12625 243845;243846;243847;243848;243849;243850;243851;243852;243853;243854;243855;243856;243857;243858;243859;243860;243861;243862;243863;243864;243865;243866;243867;243868;243869;243870;243871;243872;243873;243874;243875;243876;243877;243878;243879;243880;243881;243882;243883;243884;243885;243886;243887;243888;243889;243890;243891;243892;243893 149641;149642;149643;149644;149645;149646;149647;149648;149649;149650;149651;149652;149653;149654;149655;149656;149657;149658;149659;149660;149661;149662;149663;149664;149665;149666;149667;149668;149669;149670;149671;149672;149673;149674;149675;149676;149677;149678;149679 149664 39 LLMLEDGHCLR Unmodified 1355.669 0.66897616 741 P0ACQ4 oxyR Hydrogen peroxide-inducible genes activator yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.822 27.395 3 0.00011543 12454 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.693 77.785 93499000 18282000 18502000 15107000 1227200 1200600 995290 5054600 7151700 5417200 0 1425300 1158700 6439000 0 5473000 0 0 0 0 0 6065200 0 0 0 12950 741 12626 243894;243895;243896;243897;243898;243899;243900;243901;243902;243903;243904;243905;243906;243907 149680;149681;149682;149683 149682 2 LLMPDNMSQER Unmodified 1332.6166 0.61660624 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.517 27.27 2 1.5934E-05 12894 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 140.75 132.83 818900000 63988000 60500000 55957000 0 0 0 55849000 55277000 50034000 0 0 0 79322000 69771000 70175000 0 0 0 87419000 84706000 85900000 0 0 0 12951 1133 12627 243908;243909;243910;243911;243912;243913;243914;243915;243916;243917;243918;243919 149684;149685;149686;149687;149688;149689;149690;149691;149692;149693;149694;149695 149685 12 LLNALSQASYIHVR Unmodified 1583.8784 0.87837531 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 33.899 32.377 3 7.5603E-07 15868 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.53 94.628 97379000 0 0 0 0 0 0 24768000 25060000 26921000 0 0 0 6316000 5349900 5029600 0 0 0 0 3933900 0 0 0 0 12952 1318 12628 243920;243921;243922;243923;243924;243925;243926 149696;149697;149698 149696 3 LLNATPNGVIR Unmodified 1166.6772 0.6771563 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.432 25.186 2 1.1349E-07 10852 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 172.21 159.69 1235800000 128990000 109570000 124660000 1335900 1136300 1214300 129860000 122400000 138250000 1078700 1100200 0 67688000 61449000 62116000 0 0 0 92662000 89578000 102730000 0 0 0 12953 1109 12629 243927;243928;243929;243930;243931;243932;243933;243934;243935;243936;243937;243938;243939;243940;243941;243942;243943 149699;149700;149701;149702;149703;149704;149705;149706;149707;149708;149709;149710 149709 12 LLNDLVR Unmodified 841.50215 0.50215205 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.265 27.056 2 0.0012057 9767 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 134.12 16.557 249330000 4411500 5568700 5001800 1343800 0 1026800 3754700 0 0 9972300 6307400 9735900 4853800 4547300 4206700 25317000 18846000 22862000 8877900 9439500 7880700 31478000 32104000 31791000 12954 1448 12630 243944;243945;243946;243947;243948;243949;243950;243951;243952;243953;243954;243955;243956;243957;243958;243959;243960;243961;243962;243963;243964 149711;149712;149713;149714;149715;149716;149717;149718 149718 6 LLNDTDMAIIDK Unmodified 1360.6908 0.69081704 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.317 35.45 2 2.1422E-07 17547 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 156.48 105.6 2175200000 239880000 219140000 219690000 3854500 3707000 0 120640000 105020000 119890000 3996500 3993500 3717100 195460000 193190000 173510000 0 0 0 179290000 192560000 172230000 8861700 7905600 8623300 12955 300 12631 243965;243966;243967;243968;243969;243970;243971;243972;243973;243974;243975;243976;243977;243978;243979;243980;243981;243982;243983;243984 149719;149720;149721;149722;149723;149724;149725;149726;149727;149728;149729;149730 149719 12 LLNDTDMAIIDKR Unmodified 1516.7919 0.79192806 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 30.513 29.194 2;3 8.7959E-07 10071 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 141.93 138.95 3501800000 354510000 391150000 290940000 27142000 25732000 29707000 213740000 221790000 222420000 24204000 20572000 20521000 221270000 303780000 175130000 54486000 42899000 48709000 215970000 189650000 196030000 72702000 69940000 68780000 12956 300 12632 243985;243986;243987;243988;243989;243990;243991;243992;243993;243994;243995;243996;243997;243998;243999;244000;244001;244002;244003;244004;244005;244006;244007;244008;244009;244010;244011;244012;244013;244014;244015;244016;244017 149731;149732;149733;149734;149735;149736;149737;149738;149739;149740;149741;149742;149743;149744;149745;149746;149747;149748;149749;149750 149731 20 LLNENNALPPLANFK Unmodified 1666.9043 0.90425571 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 44.533 42.935 2 0.0315 21447 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 53.124 41.166 51439000 0 2904400 0 0 0 0 5812400 6132600 5442700 0 0 699400 4634100 3606100 3654400 0 0 0 5088200 7573900 5890500 0 0 0 12957 1047 12633 244018;244019;244020;244021;244022;244023;244024;244025;244026;244027;244028 149751 149751 0 LLNENNALPPLANFKDESGNEPR Unmodified 2551.2667 0.26667939 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 38.265 36.552 3 0.00016186 14771 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 75.184 72.84 40962000 0 0 0 2318000 2065700 1798400 0 0 0 6699900 6583500 3711700 0 0 0 3707400 0 1492100 0 0 0 4021500 4194500 4369500 12958 1047 12634 244029;244030;244031;244032;244033;244034;244035;244036;244037;244038;244039 149752;149753;149754;149755;149756;149757 149752 6 LLNFLESR Unmodified 990.54983 0.54983053 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.217 37.541 2 4.8354E-05 18128 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 171.38 108.73 389500000 40531000 38419000 39713000 0 0 292230 31855000 30948000 28417000 0 0 0 30948000 28538000 25398000 0 0 0 32936000 31327000 30180000 0 0 0 12959 1789 12635 244040;244041;244042;244043;244044;244045;244046;244047;244048;244049;244050;244051;244052 149758;149759;149760;149761;149762;149763;149764;149765;149766;149767;149768 149765 10 LLNGIPIDEEDFFGR Unmodified 1733.8625 0.86245047 187 P08390 usg USG-1 protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 1 1 2 1 1 1 1 1 1 1 2 2 2 36.519 35.918 2;3;4 3.8792E-06 25894 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.49 93.876 255600000 21332000 19263000 18409000 8273800 9599200 13446000 13487000 15568000 13503000 0 9969200 3671200 16142000 15861000 13241000 0 0 0 11828000 7763300 10307000 10939000 11927000 11073000 12960 187 12636 244053;244054;244055;244056;244057;244058;244059;244060;244061;244062;244063;244064;244065;244066;244067;244068;244069;244070;244071;244072;244073;244074;244075;244076;244077;244078 149769;149770;149771;149772;149773;149774;149775;149776;149777;149778;149779;149780 149775 12 LLNHPEVPELIR Unmodified 1428.8089 0.80889876 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.178 30.797 3 3.9032E-05 11914 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 98.182 95.103 238740000 7274900 9662500 0 0 548820 0 16157000 15577000 16421000 17521000 14816000 11202000 13277000 9680900 11491000 3395600 3470800 3698400 22261000 26113000 21234000 6599200 4034400 4302200 12961 143 12637 244079;244080;244081;244082;244083;244084;244085;244086;244087;244088;244089;244090;244091;244092;244093;244094;244095;244096;244097;244098;244099 149781;149782;149783;149784;149785;149786;149787;149788;149789 149782 9 LLNHSELTHAPCAPGTLETLSR Unmodified 2416.2169 0.21689243 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 2 1 3 3 3 2 1 2 2 2 2 2 2 2 28.571 27.164 2;3;4 9.2469E-29 12507 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 248.25 236.46 2939400000 634190000 517020000 578560000 1702600 5197800 4188600 259460000 285900000 270410000 6718700 2802700 5006700 47956000 67964000 63793000 0 0 0 71742000 71951000 44852000 0 0 0 12962 757 12638 244100;244101;244102;244103;244104;244105;244106;244107;244108;244109;244110;244111;244112;244113;244114;244115;244116;244117;244118;244119;244120;244121;244122;244123;244124;244125;244126;244127;244128;244129;244130;244131;244132;244133;244134;244135;244136;244137;244138 149790;149791;149792;149793;149794;149795;149796;149797;149798;149799;149800;149801;149802;149803;149804;149805;149806;149807;149808;149809;149810;149811;149812;149813 149804 24 LLNIDAEEK Unmodified 1043.5499 0.5498901 1518 P39280 epmB L-lysine 2,3-aminomutase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.1 23.18 2 0.11467 10190 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 46.129 36.735 63931000 8135800 7018500 4458000 0 0 368840 0 2430200 0 0 413330 0 0 4424400 6193400 0 0 0 9905500 10130000 10031000 0 422350 0 12963 1518 12639 244139;244140;244141;244142;244143;244144;244145;244146;244147;244148;244149;244150 149814 149814 0 LLNIHPSLLPK Unmodified 1243.7652 0.76524303 175 P08179 purN Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.887 31.431 3 0.0004803 14722 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 82.954 79.835 284130000 44389000 34755000 34637000 0 254900 0 19954000 19119000 15630000 0 0 0 16931000 15607000 16088000 0 0 0 21822000 22951000 21996000 0 0 0 12964 175 12640 244151;244152;244153;244154;244155;244156;244157;244158;244159;244160;244161;244162;244163 149815;149816;149817;149818;149819;149820;149821;149822 149819 8 LLNLEQAGKPVADAASMQR Unmodified 2011.0521 0.052058931 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.124 30.784 3 9.2187E-10 14567 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.82 109.43 201760000 16030000 13487000 17713000 0 0 0 8977300 11818000 8764900 0 0 0 17044000 12387000 14368000 0 0 0 28533000 26947000 25695000 0 0 0 12965 477 12641 244164;244165;244166;244167;244168;244169;244170;244171;244172;244173;244174;244175 149823;149824;149825;149826;149827;149828;149829;149830 149826 8 LLNLNDVQSGVLNIIFR Unmodified 1927.0891 0.089096364 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 1 1 1 1 55.7 54.291 2;3 1.8783E-06 19964 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 128.28 101.15 59978000 4561600 4419400 5001100 9402300 9545700 10811000 2290900 0 2712900 0 0 0 2834800 2075500 0 0 0 0 2250700 1622500 2450600 0 0 0 12966 1528 12642 244176;244177;244178;244179;244180;244181;244182;244183;244184;244185;244186;244187;244188;244189;244190;244191 149831;149832;149833 149833 3 LLNLPLSILVK Unmodified 1221.806 0.80604521 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.483 53.24 2 0.053779 26105 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 50.353 47.599 293230000 10598000 9037200 12771000 4309400 0 6705600 21604000 22538000 15735000 14675000 10299000 9529400 15617000 15383000 15627000 4082300 4208300 3286200 26087000 21148000 22769000 8195700 10273000 8752800 12967 324 12643 244192;244193;244194;244195;244196;244197;244198;244199;244200;244201;244202;244203;244204;244205;244206;244207;244208;244209;244210;244211;244212;244213;244214 149834;149835 149834 0 LLNLQTYFTAGVK Unmodified 1466.8133 0.81331543 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.15 47.758 2 2.3622E-06 23043 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 157.24 150.12 558120000 47572000 39946000 36379000 3215100 1979000 2888000 47189000 45806000 46378000 2874100 2866300 2707000 39348000 34252000 34756000 0 0 0 52202000 56745000 56916000 2060400 0 2041800 12968 680 12644 244215;244216;244217;244218;244219;244220;244221;244222;244223;244224;244225;244226;244227;244228;244229;244230;244231;244232;244233;244234 149836;149837;149838;149839;149840;149841;149842;149843;149844;149845;149846;149847;149848;149849;149850;149851;149852 149842 17 LLNSEEMALLDSAASEVA Unmodified 1861.8979 0.89790928 493 P0A964 cheW Chemotaxis protein CheW yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 55.253 53.873 2 2.0781E-09 26645 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 119.45 107.58 150550000 52281000 44944000 48302000 0 0 5021300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12969 493 12645 244235;244236;244237;244238 149853;149854;149855 149854 3 LLPEDAPSADR Unmodified 1182.5881 0.58806652 1271 P25742 rfaQ Lipopolysaccharide core heptosyltransferase RfaQ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.958 20.242 2 0.0060138 7967 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 65.224 56.692 69318000 0 3867100 2716100 766580 561050 746100 7419900 7140500 5435500 5071200 3732000 3381900 0 4044200 3906200 0 0 0 7475000 6556300 4385700 0 1390200 722420 12970 1271 12646 244239;244240;244241;244242;244243;244244;244245;244246;244247;244248;244249;244250;244251;244252;244253;244254;244255;244256 149856;149857;149858;149859;149860;149861;149862;149863 149859 8 LLPEHDVAYDGNPLAQQHGPR Unmodified 2326.1454 0.14544204 574 P0AA43 rsuA Ribosomal small subunit pseudouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 1 1 2 1 2 1 1 26.163 24.874 3;4 9.1959E-28 11030 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.62 177.2 355480000 70342000 70409000 67299000 12088000 8877300 7879900 5888100 5649200 0 13194000 12687000 14331000 0 10199000 8300900 0 0 0 0 21169000 4664300 7567700 6671500 8262200 12971 574 12647 244257;244258;244259;244260;244261;244262;244263;244264;244265;244266;244267;244268;244269;244270;244271;244272;244273;244274;244275;244276;244277;244278;244279;244280;244281;244282;244283;244284;244285 149864;149865;149866;149867;149868;149869;149870 149869 7 LLPGPTGER Unmodified 938.51853 0.5185304 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.528 17.967 2 0.00087472 4762 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 98.997 91.767 1257400000 45267000 45809000 43818000 35249000 32847000 30290000 62556000 50167000 57703000 39918000 34349000 32763000 42148000 42839000 42069000 13071000 8562900 8236300 124550000 133570000 126280000 69912000 71942000 63527000 12972 215 12648 244286;244287;244288;244289;244290;244291;244292;244293;244294;244295;244296;244297;244298;244299;244300;244301;244302;244303;244304;244305;244306;244307;244308;244309 149871;149872;149873;149874;149875;149876;149877;149878;149879;149880;149881;149882;149883;149884;149885;149886;149887;149888;149889;149890;149891;149892;149893 149888 23 LLPHIPADQFPAQALACELYK Unmodified 2394.2406 0.24058798 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 2 2 3 3 3 1 1 3 3 3 3 3 3 1 1 1 50.394 48.988 2;3;4 3.1394E-21 23723 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 199.33 192.44 57064000000 8614100000 7421600000 7229500000 72177000 75448000 81711000 4969500000 5165200000 4867000000 24645000 19713000 0 3238300000 2849200000 3171100000 0 0 0 3028200000 3183900000 2990200000 23138000 20261000 19271000 12973 397 12649 244310;244311;244312;244313;244314;244315;244316;244317;244318;244319;244320;244321;244322;244323;244324;244325;244326;244327;244328;244329;244330;244331;244332;244333;244334;244335;244336;244337;244338;244339;244340;244341;244342;244343;244344;244345;244346;244347;244348;244349;244350;244351;244352;244353;244354;244355;244356 149894;149895;149896;149897;149898;149899;149900;149901;149902;149903;149904;149905;149906;149907;149908;149909;149910;149911;149912;149913;149914;149915;149916;149917;149918;149919;149920;149921;149922;149923;149924;149925;149926;149927;149928;149929;149930;149931;149932;149933;149934;149935;149936;149937;149938;149939;149940;149941;149942;149943;149944;149945;149946 149934 52 LLPHLEISR Unmodified 1076.6342 0.63422886 795 P0ADP0 yigB Flavin mononucleotide phosphatase YigB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 26.863 25.764 2;3 0.0014291 11616 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 82.645 78.944 370920000 45222000 40477000 33816000 0 0 0 21712000 20149000 20637000 0 0 0 25221000 22889000 20339000 0 0 0 41407000 40214000 38833000 0 0 0 12974 795 12650 244357;244358;244359;244360;244361;244362;244363;244364;244365;244366;244367;244368;244369;244370;244371;244372;244373;244374;244375;244376;244377;244378 149947;149948;149949;149950;149951;149952;149953;149954;149955;149956;149957;149958;149959 149952 11 LLPLGDDVIFIPGHGPLSTLGYER Unmodified 2578.3795 0.3795243 1783 P75849 ycbL Uncharacterized protein YcbL yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 54.179 52.74 3 3.4032E-10 25905 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 122.73 120.48 1210900000 143710000 145830000 141580000 0 0 0 72883000 68668000 57877000 0 0 0 100530000 85058000 98511000 0 0 0 106630000 87945000 101640000 0 0 0 12975 1783 12651 244379;244380;244381;244382;244383;244384;244385;244386;244387;244388;244389;244390;244391;244392;244393 149960;149961;149962;149963;149964;149965;149966;149967;149968;149969 149962 9 LLPLLQDDDIIWIHDYHLLPFAHELR Unmodified 3194.6917 0.69169074 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.452 53.016 5 7.4246E-07 26311 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.397 93.32 671720000 125870000 169520000 128870000 3490400 0 3911100 44998000 47260000 38093000 0 4512000 0 20401000 14245000 11261000 0 0 0 17827000 19263000 22200000 0 0 0 12976 1376 12652 244394;244395;244396;244397;244398;244399;244400;244401;244402;244403;244404;244405;244406;244407;244408 149970;149971;149972 149970 3 LLPNFIFVANIESK Unmodified 1603.8974 0.89737941 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.483 53.029 2 1.8225E-05 25057 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 99.215 98.402 1610000000 180530000 155980000 148510000 0 0 1721200 112860000 99873000 97323000 7358800 3985100 1835600 133090000 116660000 125780000 0 0 0 142660000 141160000 139010000 0 1704400 0 12977 62 12653 244409;244410;244411;244412;244413;244414;244415;244416;244417;244418;244419;244420;244421;244422;244423;244424;244425 149973;149974;149975;149976;149977;149978;149979 149978 4 LLPNFIFVANIESKDPQQIISGNEK Unmodified 2813.4963 0.49634498 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.812 51.594 3 3.1068E-15 20807 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 138.93 138.18 309090000 12816000 19154000 0 15162000 9774500 13321000 14056000 14376000 10327000 30128000 22381000 22859000 6884200 7639800 7234700 8310800 7643200 10704000 12639000 10512000 12189000 10207000 17232000 13534000 12978 62 12654 244426;244427;244428;244429;244430;244431;244432;244433;244434;244435;244436;244437;244438;244439;244440;244441;244442;244443;244444;244445;244446;244447;244448 149980;149981;149982;149983;149984;149985;149986;149987;149988;149989;149990 149983 11 LLPNKPVEVIDSLLYGK Unmodified 1897.0925 0.092450407 1744 P69795 chbB N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 2 2 2 1 1 2 2 2 52.102 50.941 2;3 1.2172E-06 24651 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.579 97.579 855830000 47230000 50238000 45725000 2674500 2608000 1873000 70039000 88571000 93066000 0 0 2496200 94720000 96258000 100530000 1780800 0 2222200 53189000 51398000 51218000 0 0 0 12979 1744 12655 244449;244450;244451;244452;244453;244454;244455;244456;244457;244458;244459;244460;244461;244462;244463;244464;244465;244466;244467;244468;244469;244470;244471;244472;244473;244474;244475 149991;149992;149993;149994;149995;149996;149997;149998;149999;150000;150001;150002;150003;150004;150005;150006 149997 16 LLPSLYQLEK Unmodified 1202.6911 0.69107503 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.845 39.045 2 5.6617E-05 18973 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.48 130.37 1936000000 152370000 130010000 143120000 798980 815230 1047200 201720000 168870000 187570000 1991400 1162300 0 137340000 125540000 122010000 0 0 0 185890000 189740000 186000000 0 0 0 12980 702 12656 244476;244477;244478;244479;244480;244481;244482;244483;244484;244485;244486;244487;244488;244489;244490;244491;244492 150007;150008;150009;150010;150011;150012;150013;150014;150015 150011 9 LLPTEIMAGSPIR Unmodified 1396.7748 0.77482144 1286 P26648 ftsP Cell division protein FtsP yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.075 42.56 2 0.028117 21092 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 47.288 34.332 189470000 15869000 14505000 17122000 0 0 0 13711000 12205000 13368000 0 0 0 12671000 13793000 15313000 0 0 0 18046000 19975000 22892000 0 0 0 12981 1286 12657 244493;244494;244495;244496;244497;244498;244499;244500;244501;244502;244503;244504 150016;150017 150017 2 LLPWIDGLLDAGEK Unmodified 1538.8344 0.83444481 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 3 2 2 3 2 2 2 2 2 1 1 1 55.416 53.962 2;3 3.607E-11 26809 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.8 167.46 22817000000 1643600000 1520100000 1629500000 5283900 5195100 3976600 2400700000 2344400000 2271800000 0 0 0 1898200000 1684200000 1653900000 0 0 0 2064600000 1933700000 1745500000 4390700 4221200 3272800 12982 634 12658 244505;244506;244507;244508;244509;244510;244511;244512;244513;244514;244515;244516;244517;244518;244519;244520;244521;244522;244523;244524;244525;244526;244527;244528;244529;244530;244531;244532;244533;244534;244535;244536 150018;150019;150020;150021;150022;150023;150024;150025;150026;150027;150028;150029;150030;150031;150032;150033;150034;150035;150036;150037;150038;150039;150040;150041;150042;150043;150044;150045;150046 150021 28 LLQAVLAK Unmodified 854.55894 0.55893865 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.557 24.378 2 0.0032142 11285 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.006 28.109 277140000 20141000 25304000 0 1833900 1202000 0 23807000 21648000 27003000 0 2004700 1304500 22147000 19268000 14377000 0 0 0 30289000 34498000 29501000 1494700 1320600 0 12983 303 12659 244537;244538;244539;244540;244541;244542;244543;244544;244545;244546;244547;244548;244549;244550;244551;244552;244553 150047;150048;150049;150050;150051;150052;150053;150054;150055;150056;150057 150047 11 LLQDEDREYGYVIER Unmodified 1896.9218 0.92175626 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 30.488 28.918 2;3 3.5831E-20 13606 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 217.88 184 701710000 0 0 0 18838000 9282300 14158000 5894500 46499000 50060000 29382000 28492000 28278000 35525000 33432000 31823000 5868800 4186200 4900600 88825000 94103000 85228000 30382000 30982000 25565000 12984 1094 12660 244554;244555;244556;244557;244558;244559;244560;244561;244562;244563;244564;244565;244566;244567;244568;244569;244570;244571;244572;244573;244574;244575;244576;244577;244578;244579;244580;244581;244582;244583;244584;244585;244586 150058;150059;150060;150061;150062;150063;150064;150065;150066;150067;150068;150069;150070;150071;150072;150073;150074;150075;150076;150077;150078;150079;150080;150081;150082 150072 25 LLQDVAR Unmodified 813.47085 0.47085192 276 P0A6S7 gpsA Glycerol-3-phosphate dehydrogenase [NAD(P)+] yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.471 17.252 2 0.0053719 5753 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 99.919 68.861 441180000 45424000 44849000 37665000 0 864790 461450 34202000 34583000 29748000 0 0 0 28733000 31727000 28545000 0 0 0 39069000 44583000 40722000 0 0 0 12985 276 12661 244587;244588;244589;244590;244591;244592;244593;244594;244595;244596;244597;244598;244599;244600 150083;150084 150084 2 LLQEEEEGLPLVGR Unmodified 1580.841 0.84098675 330 P0A7C2 lexA LexA repressor yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.632 38.773 2 4.605E-11 15699 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 170.72 165.82 181590000 18116000 16981000 15001000 3569300 4631500 3644500 9947400 13145000 10622000 4862500 5461600 3701500 6687700 8117800 7029500 0 0 0 12882000 14309000 15248000 3311300 2197200 2128000 12986 330 12662 244601;244602;244603;244604;244605;244606;244607;244608;244609;244610;244611;244612;244613;244614;244615;244616;244617;244618;244619;244620;244621 150085;150086;150087;150088;150089;150090;150091 150085 7 LLQESGIPEAK Unmodified 1183.6449 0.64485312 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.971 22.383 2 2.606E-06 7695 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 109.66 97.457 531080000 7820500 7315000 8012300 4823300 5771900 4973500 17032000 15706000 17306000 11516000 10424000 0 20872000 16576000 17024000 5756300 3971200 5064500 79147000 72174000 72629000 46451000 40613000 40104000 12987 1435 12663 244622;244623;244624;244625;244626;244627;244628;244629;244630;244631;244632;244633;244634;244635;244636;244637;244638;244639;244640;244641;244642;244643;244644;244645 150092;150093;150094;150095;150096;150097;150098;150099;150100;150101;150102 150093 11 LLQFEETLTVVAR Unmodified 1517.8453 0.84534384 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 50.014 48.678 2 5.5747E-05 23795 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.549 72.418 44138000 6180300 7230800 4598900 0 0 0 0 0 0 0 0 0 0 0 7833500 0 0 0 10100000 0 8194800 0 0 0 12988 1073 12664 244646;244647;244648;244649;244650;244651;244652 150103;150104;150105 150103 3 LLQLSTLELQQELQQALESNPLLEQIDTHEEIDTR Unmodified 4087.0961 0.0960984 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 55.784 55.84 3;4 3.5112E-56 21018 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 240.39 239.21 708200000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 155600000 256100000 296500000 0 0 0 0 0 0 12989 1249 12665 244653;244654;244655;244656;244657;244658 150106;150107;150108 150107 3 LLQNLLNVPK Unmodified 1150.7074 0.7073938 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 39.318 37.739 2 3.2515E-05 18280 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.89 107.49 145370000 45800000 47532000 49588000 917640 709400 817990 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12990 46 12666 244659;244660;244661;244662;244663;244664 150109;150110;150111 150110 3 LLQQLLK Unmodified 854.55894 0.55893865 2001 yes yes 0 0 0 By MS/MS 1 25.027 24.17 2 0.0074891 10655 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 91.093 3.0646 22244000 0 0 22244000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 12991 2001 12667 244665 150112 150112 1 LLQQSGTFDSR Unmodified 1250.6255 0.62551466 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 19.844 20.142 2 1.9545E-10 7714 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.92 187.18 4124500000 250910000 256830000 245380000 4720000 4045600 5180600 335180000 304390000 305850000 7669200 5615600 4919300 365560000 372380000 356200000 3539500 2599100 2629100 458290000 412460000 420190000 0 0 0 12992 1388 12668 244666;244667;244668;244669;244670;244671;244672;244673;244674;244675;244676;244677;244678;244679;244680;244681;244682;244683;244684;244685;244686;244687;244688 150113;150114;150115;150116;150117;150118;150119;150120;150121;150122;150123;150124;150125;150126;150127;150128;150129;150130;150131;150132 150129 20 LLQTLIEEEWPDR Unmodified 1640.841 0.84098675 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.517 48.113 2 8.5653E-07 17300 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 164.64 162.13 129710000 17118000 0 11889000 3200200 2555900 2278600 8797800 9491800 7338300 3247800 2930300 0 6790100 6161000 7067800 0 0 0 12488000 15517000 12837000 0 0 0 12993 438 12669 244689;244690;244691;244692;244693;244694;244695;244696;244697;244698;244699;244700;244701;244702;244703;244704 150133;150134 150133 1 LLQVGGAR Unmodified 812.48684 0.48683634 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.239 17.063 2 0.010693 5614 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 77.984 65.453 181620000 5294700 7146700 6176200 0 0 0 11425000 11659000 9429600 0 0 0 14415000 12049000 11752000 0 0 0 26738000 30305000 35226000 0 0 0 12994 1055 12670 244705;244706;244707;244708;244709;244710;244711;244712;244713;244714;244715;244716 150135 150135 1 LLQYAER Unmodified 891.48142 0.48141661 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 2 1 1 2 2 1 1 17.357 17.918 2 0.0018451 6139 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 122.79 105.86 1174600000 44768000 48717000 41499000 0 0 682110 167530000 169880000 154630000 548080 627980 703460 97908000 94537000 88164000 0 0 0 88567000 86779000 88324000 702490 0 0 12995 1959 12671 244717;244718;244719;244720;244721;244722;244723;244724;244725;244726;244727;244728;244729;244730;244731;244732;244733;244734;244735;244736 150136;150137;150138;150139;150140;150141;150142 150142 7 LLRDYQELMNTK Unmodified 1522.7814 0.78136338 11;3 CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 1 2 2 2 28.886 27.308 2;3 4.4402E-08 10549 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 166.87 129.32 260310000 0 0 0 4348800 7770300 7540100 0 0 0 71195000 56026000 59614000 0 0 0 0 3541900 3300800 0 0 0 15658000 15810000 15504000 + 12996 11;3 12672 244737;244738;244739;244740;244741;244742;244743;244744;244745;244746;244747;244748;244749;244750;244751;244752;244753;244754;244755 150143;150144;150145;150146;150147;150148;150149;150150;150151;150152;150153;150154;150155;150156;150157 150145 15 LLSAAGLSK Unmodified 858.51747 0.51746776 1390 P32157 yiiM Protein YiiM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.719 21.111 2 0.00077595 8656 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 101.54 50.576 469350000 44858000 50885000 41043000 0 1227400 0 57000000 60666000 54010000 0 0 0 29220000 24130000 20954000 0 0 0 26727000 33794000 24834000 0 0 0 12997 1390 12673 244756;244757;244758;244759;244760;244761;244762;244763;244764;244765;244766;244767;244768 150158;150159;150160;150161;150162;150163;150164;150165;150166;150167 150159 8 LLSDTECLVK Unmodified 1176.606 0.60602477 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.557 26.453 2 0.00014418 12084 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.41 102.98 2356600000 568630000 502930000 514180000 6330100 4246200 6894000 89599000 95432000 94185000 0 0 0 64064000 68749000 61997000 1655800 0 0 96771000 96772000 84163000 0 0 0 12998 334 12674 244769;244770;244771;244772;244773;244774;244775;244776;244777;244778;244779;244780;244781;244782;244783;244784;244785 150168;150169;150170;150171;150172;150173;150174;150175;150176;150177;150178;150179 150172 12 LLSENGYDPVYGAR Unmodified 1552.7522 0.75217174 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.479 29.974 2 2.9159E-14 14016 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 181.62 171.62 589190000 78716000 67711000 61497000 1334200 0 0 72777000 68767000 71217000 0 4741300 3630500 31302000 27778000 28835000 0 0 0 37833000 33053000 0 0 0 0 12999 1662 12675 244786;244787;244788;244789;244790;244791;244792;244793;244794;244795;244796;244797;244798;244799 150180;150181;150182;150183;150184;150185;150186;150187;150188 150185 9 LLSEQLGEGEIELR Unmodified 1584.8359 0.83590137 1936 P77739 yniA Uncharacterized protein YniA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.939 38.265 2 1.5303E-26 18689 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 280.19 236.88 350540000 63847000 63006000 54011000 0 0 0 35367000 29016000 32591000 0 0 0 18407000 12501000 13661000 0 0 0 8288300 10248000 9597300 0 0 0 13000 1936 12676 244800;244801;244802;244803;244804;244805;244806;244807;244808;244809;244810;244811 150189;150190;150191;150192;150193;150194;150195;150196;150197;150198;150199 150194 11 LLSHRPVR Unmodified 976.59303 0.59303274 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 10.454 11.272 2 0.0028012 2632 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.32 77.132 380790000 97022000 115870000 97069000 0 0 0 0 0 0 0 0 0 19321000 0 14319000 0 0 0 0 18457000 18731000 0 0 0 13001 529 12677 244812;244813;244814;244815;244816;244817;244818 150200;150201 150200 2 LLSLCGPFDDNIK Unmodified 1490.7439 0.74391524 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.579 44.05 2 3.9045E-07 21491 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 118.4 92.284 562180000 77555000 84370000 79873000 0 0 0 49610000 47257000 44477000 0 0 8352700 33588000 30613000 26631000 0 0 0 0 36434000 40089000 3332500 0 0 13002 530 12678 244819;244820;244821;244822;244823;244824;244825;244826;244827;244828;244829;244830;244831;244832 150202;150203;150204;150205;150206;150207;150208;150209;150210;150211;150212;150213;150214 150206 13 LLSLDGPTGALTHGTFTDLLDK Unmodified 2284.1951 0.19507758 341 P0A7F9 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.622 50.375 3 1.1307E-23 24513 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 180.13 174.55 608420000 47164000 55080000 41148000 0 0 0 36591000 40598000 35455000 0 0 0 57674000 50950000 40880000 0 0 0 58989000 68017000 75872000 0 0 0 13003 341 12679 244833;244834;244835;244836;244837;244838;244839;244840;244841;244842;244843;244844 150215;150216;150217;150218;150219;150220;150221;150222;150223;150224;150225;150226;150227 150218 13 LLSNFFAQTEALAFGK Unmodified 1755.9196 0.91957142 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 2 2 2 54.74 53.353 2;3 6.2425E-19 26523 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 198.97 176.25 5481300000 430540000 416670000 383760000 0 0 1595600 757170000 687080000 667300000 0 0 0 335510000 357320000 303880000 4258300 0 0 348410000 420220000 367570000 0 0 0 13004 277 12680 244845;244846;244847;244848;244849;244850;244851;244852;244853;244854;244855;244856;244857;244858;244859;244860;244861;244862;244863;244864;244865;244866;244867;244868;244869;244870 150228;150229;150230;150231;150232;150233;150234;150235;150236;150237;150238;150239;150240;150241;150242;150243;150244;150245;150246;150247;150248;150249;150250;150251 150228 24 LLSPEFK Unmodified 832.46945 0.46945494 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.221 24.19 2 0.0060552 10762 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 97.071 71.513 427110000 15039000 11781000 14711000 0 0 0 52799000 49485000 47182000 0 0 0 24675000 27854000 21651000 0 0 0 46569000 53594000 61771000 0 0 0 13005 51 12681 244871;244872;244873;244874;244875;244876;244877;244878;244879;244880;244881;244882 150252;150253;150254;150255;150256;150257;150258;150259;150260;150261;150262 150256 11 LLSPEVANDK Unmodified 1084.5764 0.57643921 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.275 19.794 2 0.0002692 7135 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 114.89 104.03 498380000 40085000 35985000 32021000 0 0 0 28525000 34506000 24902000 0 0 0 53985000 49206000 46956000 0 0 0 49128000 54343000 48740000 0 0 0 13006 951 12682 244883;244884;244885;244886;244887;244888;244889;244890;244891;244892;244893;244894 150263;150264;150265;150266;150267;150268;150269;150270;150271 150271 7 LLSQLGAK Unmodified 828.5069 0.50690308 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 1 1 1 18.634 19.147 1;2 0.00079634 7342 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.79 47.479 1498500000 79835000 85326000 85193000 1312500 776730 0 121880000 135110000 123090000 0 994160 0 124620000 128330000 112700000 0 0 0 174110000 174590000 147510000 1361000 902720 907590 13007 311 12683 244895;244896;244897;244898;244899;244900;244901;244902;244903;244904;244905;244906;244907;244908;244909;244910;244911;244912;244913;244914;244915;244916;244917;244918;244919;244920;244921;244922;244923;244924 150272;150273;150274;150275;150276;150277;150278;150279;150280;150281;150282;150283;150284;150285;150286 150274 14 LLSQPSR Unmodified 799.4552 0.45520186 1311 P27836 wecG UDP-N-acetyl-D-mannosaminuronic acid transferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 15.653 16.258 2 0.013978 5772 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.229 36.878 995520000 10383000 136160000 112960000 0 0 6162700 15423000 15308000 19061000 0 3423100 4568800 115530000 98670000 94279000 25319000 19214000 21256000 98968000 191460000 0 4596200 0 2791600 13008 1311 12684 244925;244926;244927;244928;244929;244930;244931;244932;244933;244934;244935;244936;244937;244938;244939;244940;244941;244942;244943;244944;244945;244946;244947;244948 150287;150288;150289;150290;150291;150292;150293 150288 7 LLSSGPR Unmodified 728.41809 0.41808807 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.314 12.971 2 0.00019738 3596 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.13 166.13 3791100000 248990000 215120000 240720000 0 0 0 540890000 517380000 537480000 1246500 1264000 1490100 366250000 0 361730000 0 0 0 257810000 256310000 242380000 2083600 0 0 13009 697 12685 244949;244950;244951;244952;244953;244954;244955;244956;244957;244958;244959;244960;244961;244962;244963 150294;150295;150296;150297 150296 4 LLTCSWQPGVR Unmodified 1315.6707 0.67069072 1520 P39298 yjfP Esterase YjfP yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 31.497 30.092 2 9.8424E-05 14365 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.15 83.759 76074000 20014000 16241000 13936000 0 0 0 11984000 0 13898000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13010 1520 12686 244964;244965;244966;244967;244968 150298;150299 150298 2 LLTETIESLNTR Unmodified 1388.7511 0.75110911 609 P0AAS0 ylaC Inner membrane protein YlaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.107 34.648 2 1.1018E-06 16678 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.66 118.34 446430000 0 0 0 3417500 2767700 2637000 0 0 0 13873000 15283000 0 45674000 46066000 49420000 6544200 3780000 5817500 45451000 65731000 67471000 23399000 23524000 25569000 13011 609 12687 244969;244970;244971;244972;244973;244974;244975;244976;244977;244978;244979;244980;244981;244982;244983;244984;244985 150300;150301;150302;150303;150304;150305;150306;150307;150308;150309;150310;150311;150312;150313;150314 150306 12 LLTGDSPFAANALGK Unmodified 1473.7827 0.78274359 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.019 37.275 2 4.3869E-06 18526 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.32 95.091 1226300000 0 0 0 1319700 1810500 1849400 314820000 292440000 318300000 0 0 0 38628000 35266000 33663000 0 0 0 61954000 66117000 60123000 0 0 0 13012 1373 12688 244986;244987;244988;244989;244990;244991;244992;244993;244994;244995;244996;244997 150315 150315 1 LLTGIHNEDTIEQYHAHGR Unmodified 2203.077 0.077028128 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 3 3 2 2 3 3 3 3 3 3 2 3 3 3 3 2 2 17.894 18.469 3;4;5 5.2945E-37 6828 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 231.44 223.35 1546700000 144170000 165660000 175400000 20874000 27063000 27758000 147060000 151210000 150720000 0 0 0 77217000 72404000 39521000 0 0 0 105920000 127190000 82847000 13546000 9329300 8828700 13013 235 12689 244998;244999;245000;245001;245002;245003;245004;245005;245006;245007;245008;245009;245010;245011;245012;245013;245014;245015;245016;245017;245018;245019;245020;245021;245022;245023;245024;245025;245026;245027;245028;245029;245030;245031;245032;245033;245034;245035;245036;245037;245038;245039;245040;245041;245042;245043;245044;245045;245046 150316;150317;150318;150319;150320;150321;150322;150323;150324;150325;150326;150327;150328;150329;150330;150331;150332;150333;150334;150335;150336;150337;150338;150339;150340;150341;150342 150331 25 LLTIMQRLRDPENGCPWDK Unmodified 2341.1671 0.16710546 896 P0AEY3 mazG Nucleoside triphosphate pyrophosphohydrolase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.762 28.439 4 0.16097 12659 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 8.8232 4.9464 2170500000 19539000 26575000 26387000 0 0 0 12655000 16330000 14100000 558550000 410280000 473890000 34213000 31146000 35230000 39276000 47422000 56756000 29960000 53117000 33271000 126590000 125260000 0 13014 896 12690 245047;245048;245049;245050;245051;245052;245053;245054;245055;245056;245057;245058;245059;245060;245061;245062;245063;245064;245065;245066 150343 150343 1 LLTNNPK Unmodified 798.45995 0.45995289 347 P0A7I7 ribA GTP cyclohydrolase-2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.629 12.522 2 0.0019075 3182 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 121.68 99.553 747220000 70149000 50717000 52011000 1431700 1565700 1545900 72833000 0 72281000 0 0 0 65806000 60189000 66830000 0 0 0 78261000 74903000 78695000 0 0 0 13015 347 12691 245067;245068;245069;245070;245071;245072;245073;245074;245075;245076;245077;245078;245079;245080 150344;150345;150346;150347 150347 4 LLTPIDVNK Unmodified 1011.5964 0.59644637 1470 P37387 xylF D-xylose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.384 28.118 2 0.0021684 13069 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.095 83.005 256890000 86063000 73430000 60664000 0 0 0 5580100 6640000 6341100 0 0 0 4097900 3031400 2836900 0 0 0 3687400 4517200 0 0 0 0 13016 1470 12692 245081;245082;245083;245084;245085;245086;245087;245088;245089;245090;245091 150348;150349;150350 150348 3 LLTPSQFTFVFQQPQR Unmodified 1936.0207 0.020682448 381 P0A7Y8 rnpA Ribonuclease P protein component yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 53.225 51.834 2;3 1.6539E-18 20683 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 241.03 211.23 73237000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2263900 0 0 25516000 22854000 22602000 13017 381 12693 245092;245093;245094;245095;245096;245097;245098 150351;150352;150353;150354;150355 150353 5 LLTPVEGVEHEDNLIVR Unmodified 1932.0316 0.031641065 1647 P62615 ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 37.282 35.588 3 7.6043E-09 16581 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 116.35 113.6 308640000 0 50981000 38672000 0 0 0 23290000 21136000 28701000 0 0 0 18211000 21152000 17105000 0 0 0 29688000 30890000 28814000 0 0 0 13018 1647 12694 245099;245100;245101;245102;245103;245104;245105;245106;245107;245108;245109 150356;150357;150358;150359 150357 4 LLTQDDTVNLSK Unmodified 1345.7089 0.70890994 747 P0ACU0 ybiH Uncharacterized HTH-type transcriptional regulator YbiH yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 26.516 25.07 2 2.7043E-06 11407 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.16 110.75 70767000 28002000 0 0 472260 481670 445990 13045000 12639000 13393000 0 1503000 785140 0 0 0 0 0 0 0 0 0 0 0 0 13019 747 12695 245110;245111;245112;245113;245114;245115;245116;245117;245118 150360;150361;150362;150363 150363 4 LLTQLYGDR Unmodified 1077.5819 0.58185893 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.989 27.573 2 9.8613E-08 12976 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 183.9 119.1 604550000 58170000 52489000 57993000 0 1023300 900830 50124000 59728000 54824000 2219300 1369800 1745900 38005000 44433000 33788000 681540 0 0 47024000 51119000 46378000 1167600 1367600 0 13020 1609 12696 245119;245120;245121;245122;245123;245124;245125;245126;245127;245128;245129;245130;245131;245132;245133;245134;245135;245136;245137;245138 150364;150365;150366;150367;150368;150369;150370;150371;150372;150373;150374;150375;150376;150377 150368 13 LLTSQGPGTAIDFGLK Unmodified 1616.8774 0.87737225 1970 Q46948 yajL Probable protein deglycase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 43.246 41.863 2 1.5387E-13 20224 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 167.44 142.59 517050000 102490000 96916000 83257000 0 0 0 0 0 0 0 0 0 38419000 0 0 0 0 0 73032000 60450000 62487000 0 0 0 13021 1970 12697 245139;245140;245141;245142;245143;245144;245145 150378;150379;150380 150380 3 LLTTCNIPVPSDVR Unmodified 1583.8341 0.83412723 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 3 2 1 2 1 2 2 2 1 1 1 2 2 2 1 1 1 37.261 35.587 2;3 7.5622E-11 17374 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 205.13 184.85 26454000000 2399400000 2487900000 2045400000 10048000 10391000 9377400 3221900000 3055000000 3142000000 5202900 8853600 5407800 1542500000 1549900000 1538300000 2619800 2353800 2276200 1791200000 1845200000 1770900000 2476700 2259300 2672700 13022 321 12698 245146;245147;245148;245149;245150;245151;245152;245153;245154;245155;245156;245157;245158;245159;245160;245161;245162;245163;245164;245165;245166;245167;245168;245169;245170;245171;245172;245173;245174;245175;245176;245177;245178;245179;245180;245181;245182;245183;245184;245185;245186 150381;150382;150383;150384;150385;150386;150387;150388;150389;150390;150391;150392;150393;150394;150395;150396;150397;150398;150399;150400;150401;150402;150403;150404;150405;150406;150407;150408;150409;150410;150411;150412;150413;150414;150415;150416;150417;150418;150419;150420;150421;150422;150423;150424;150425;150426;150427;150428;150429 150392 47 LLTWGFR Unmodified 891.49667 0.49667274 844;189 P0AEB2;P08506 dacA;dacC D-alanyl-D-alanine carboxypeptidase DacA;D-alanyl-D-alanine carboxypeptidase DacC no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.842 39.23 2 0.0007365 13525 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 146.21 62.984 529780000 14942000 13297000 12985000 6542700 8171400 7288500 45126000 43712000 43787000 29107000 22010000 25428000 28477000 24084000 25860000 8842200 5273900 4536900 40851000 41442000 41320000 12179000 12587000 11935000 13023 844;189 12699 245187;245188;245189;245190;245191;245192;245193;245194;245195;245196;245197;245198;245199;245200;245201;245202;245203;245204;245205;245206;245207;245208;245209;245210 150430;150431;150432;150433;150434;150435;150436;150437;150438;150439;150440;150441;150442;150443;150444;150445;150446;150447;150448;150449;150450;150451;150452;150453 150432 24 LLVAAQAVPR Unmodified 1036.6393 0.63931423 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.396 25.273 2 1.3666E-05 10855 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 152.39 127.76 761210000 24168000 21436000 22530000 10756000 11936000 10926000 76984000 72636000 89043000 25320000 24947000 19094000 36486000 42459000 38491000 3583700 2456000 2802700 60953000 59679000 63346000 13719000 13719000 13741000 13024 201 12700 245211;245212;245213;245214;245215;245216;245217;245218;245219;245220;245221;245222;245223;245224;245225;245226;245227;245228;245229;245230;245231;245232;245233;245234 150454;150455;150456;150457;150458;150459;150460;150461;150462;150463;150464;150465;150466;150467 150466 14 LLVAGCGPVFQLCR Unmodified 1588.8218 0.82178841 450 P0A8N7 epmA Elongation factor P--(R)-beta-lysine ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 45.324 43.848 2 0.053463 21151 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 61.78 60.144 151250000 10371000 9847900 9178300 0 0 0 17163000 14239000 14736000 0 0 0 0 0 0 0 0 0 25548000 26194000 23971000 0 0 0 13025 450 12701 245235;245236;245237;245238;245239;245240;245241;245242;245243 150468 150468 0 LLVANTHDHILCFSSR Unmodified 1881.952 0.95195096 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 4 3 2 2 3 4 4 3 3 2 2 3 4 3 3 2 3 28.717 27.423 2;3;4 1.3334E-30 12554 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 274.39 261.96 3086200000 191720000 210280000 197450000 9432700 8884100 10500000 211470000 242890000 250910000 68940000 68968000 68278000 176060000 194910000 185220000 23118000 15130000 19001000 295530000 291200000 250380000 35846000 32487000 27584000 13026 882 12702 245244;245245;245246;245247;245248;245249;245250;245251;245252;245253;245254;245255;245256;245257;245258;245259;245260;245261;245262;245263;245264;245265;245266;245267;245268;245269;245270;245271;245272;245273;245274;245275;245276;245277;245278;245279;245280;245281;245282;245283;245284;245285;245286;245287;245288;245289;245290;245291;245292;245293;245294;245295;245296;245297;245298;245299;245300;245301;245302;245303;245304;245305;245306;245307;245308;245309;245310;245311 150469;150470;150471;150472;150473;150474;150475;150476;150477;150478;150479;150480;150481;150482;150483;150484;150485;150486;150487;150488;150489;150490;150491;150492;150493;150494;150495;150496;150497;150498;150499;150500;150501;150502;150503;150504;150505;150506;150507;150508;150509;150510;150511;150512;150513;150514;150515;150516;150517;150518;150519 150509 51 LLVDACYSPVER Unmodified 1420.7021 0.70205043 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 3 2 3 4 9 9 12 2 3 2 19 28 25 3 2 2 12 11 8 38.602 37.488 2;3 3.0507E-23 11579 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 232.97 215.11 94698000000 1239100000 1163400000 1057600000 67848000 60001000 67443000 804870000 743270000 745170000 6437100000 5920700000 6682900000 944890000 918790000 850120000 14536000000 14042000000 14692000000 1149100000 1127300000 1110700000 7254600000 6414700000 6668300000 13027 383 12703 245312;245313;245314;245315;245316;245317;245318;245319;245320;245321;245322;245323;245324;245325;245326;245327;245328;245329;245330;245331;245332;245333;245334;245335;245336;245337;245338;245339;245340;245341;245342;245343;245344;245345;245346;245347;245348;245349;245350;245351;245352;245353;245354;245355;245356;245357;245358;245359;245360;245361;245362;245363;245364;245365;245366;245367;245368;245369;245370;245371;245372;245373;245374;245375;245376;245377;245378;245379;245380;245381;245382;245383;245384;245385;245386;245387;245388;245389;245390;245391;245392;245393;245394;245395;245396;245397;245398;245399;245400;245401;245402;245403;245404;245405;245406;245407;245408;245409;245410;245411;245412;245413;245414;245415;245416;245417;245418;245419;245420;245421;245422;245423;245424;245425;245426;245427;245428;245429;245430;245431;245432;245433;245434;245435;245436;245437;245438;245439;245440;245441;245442;245443;245444;245445;245446;245447;245448;245449;245450;245451;245452;245453;245454;245455;245456;245457;245458;245459;245460;245461;245462;245463;245464;245465;245466;245467;245468;245469;245470;245471;245472;245473;245474;245475;245476;245477;245478;245479;245480;245481;245482 150520;150521;150522;150523;150524;150525;150526;150527;150528;150529;150530;150531;150532;150533;150534;150535;150536;150537;150538;150539;150540;150541;150542;150543;150544;150545;150546;150547;150548;150549;150550;150551;150552;150553;150554;150555;150556;150557;150558;150559;150560;150561;150562;150563;150564;150565;150566;150567;150568;150569;150570;150571;150572;150573;150574;150575;150576;150577;150578;150579;150580;150581;150582;150583;150584;150585;150586;150587;150588;150589;150590;150591;150592;150593;150594;150595;150596;150597;150598;150599;150600;150601;150602;150603;150604;150605;150606;150607;150608;150609;150610;150611;150612;150613;150614;150615;150616;150617;150618;150619;150620;150621;150622;150623;150624;150625;150626;150627;150628;150629;150630;150631;150632;150633;150634;150635;150636;150637;150638;150639;150640;150641;150642;150643;150644;150645;150646;150647;150648;150649;150650;150651;150652;150653;150654;150655;150656;150657;150658;150659;150660;150661;150662;150663;150664;150665;150666;150667;150668;150669;150670;150671;150672;150673;150674;150675;150676;150677;150678;150679;150680;150681;150682;150683;150684;150685;150686;150687;150688;150689;150690 150521 145 LLVDIQHGHK Unmodified 1158.6509 0.65094155 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.847 15.333 2 0.0033475 5117 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 80.165 48.936 77186000 0 0 0 0 0 0 5935600 6767500 10051000 0 1465800 1393200 6793000 0 7011200 5437900 756050 0 10499000 9477000 8594800 1506100 0 1496700 13028 1787 12704 245483;245484;245485;245486;245487;245488;245489;245490;245491;245492;245493;245494;245495;245496 150691;150692;150693 150691 0 LLVDNNSEGEYAIIPASVADK Unmodified 2217.1165 0.11649291 1594 P51024 yaiL Uncharacterized protein YaiL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 1 2 2 2 2 45.834 44.377 2;3 1.6074E-21 21509 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 210.09 196.41 255110000 19635000 19423000 15092000 0 0 0 15555000 17756000 13487000 0 0 0 24821000 13729000 28218000 0 0 0 27504000 31211000 28675000 0 0 0 13029 1594 12705 245497;245498;245499;245500;245501;245502;245503;245504;245505;245506;245507;245508;245509;245510;245511;245512;245513;245514 150694;150695;150696;150697;150698;150699;150700;150701;150702;150703;150704 150698 11 LLVETDSPYLAPVPHR Unmodified 1805.9676 0.96758424 960 P0AFQ7 ycfH Uncharacterized deoxyribonuclease YcfH yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 2 1 2 1 2 1 1 2 36.424 34.887 2;3 0.00011579 16081 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 73.022 68.851 338550000 46183000 37980000 30053000 0 0 0 24153000 23113000 21285000 0 0 0 26821000 17969000 21106000 0 0 0 31532000 26332000 32022000 0 0 0 13030 960 12706 245515;245516;245517;245518;245519;245520;245521;245522;245523;245524;245525;245526;245527;245528;245529;245530;245531 150705;150706 150706 1 LLVGGVR Unmodified 712.45956 0.45955895 1991 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 2 1 1 18.687 19.26 2 0.0023513 6945 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 113.82 73.458 185130000 0 33562000 5808900 0 0 0 12847000 13648000 63396000 0 0 0 14834000 22938000 8475800 0 0 0 0 0 9622000 0 0 0 + 13031 1991 12707 245532;245533;245534;245535;245536;245537;245538;245539;245540;245541 150707 150707 1 LLVHPSTSPVPK Unmodified 1273.7394 0.73942221 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 17.861 18.406 2;3 3.3235E-08 6632 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 179.09 125.32 30487000000 7489800000 7518500000 6345500000 35610000 35325000 40562000 1170200000 1276100000 1215600000 5602400 6772800 5629700 817330000 663520000 716060000 0 0 0 1126400000 1038800000 969570000 2991700 3549600 3382200 13032 1217 12708 245542;245543;245544;245545;245546;245547;245548;245549;245550;245551;245552;245553;245554;245555;245556;245557;245558;245559;245560;245561;245562;245563;245564;245565;245566;245567;245568;245569;245570;245571;245572;245573;245574;245575;245576;245577;245578;245579;245580 150708;150709;150710;150711;150712;150713;150714;150715;150716;150717;150718;150719;150720;150721;150722;150723;150724;150725;150726;150727;150728;150729;150730;150731;150732;150733;150734;150735;150736;150737;150738;150739;150740;150741;150742;150743;150744;150745;150746;150747;150748;150749;150750 150736 43 LLVIIGPCSIHDLTAAMEYATR Unmodified 2443.2603 0.26033715 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 54.705 53.214 3 0.0046535 26371 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 61.136 58.523 175640000 2389800 67995000 0 0 0 0 15597000 14447000 11128000 0 0 0 0 0 0 0 0 0 21426000 23479000 19175000 0 0 0 13033 44 12709 245581;245582;245583;245584;245585;245586;245587;245588 150751;150752;150753;150754;150755 150755 0 LLVILGNPPALK Unmodified 1246.8013 0.80129418 1833 P76215 astE Succinylglutamate desuccinylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 46.091 44.751 2 6.579E-05 21743 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.56 103.56 69880000 24693000 22679000 22509000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13034 1833 12710 245589;245590;245591 150756;150757;150758 150758 3 LLVLEFSK Unmodified 947.56917 0.56916898 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.748 39.083 2 0.015232 19620 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 70.525 70.525 81073000 5011500 4796000 4715800 0 0 0 9807100 7479700 6904700 0 0 0 5637400 5253300 5241000 0 0 0 9218900 8661400 8346500 0 0 0 13035 408 12711 245592;245593;245594;245595;245596;245597;245598;245599;245600;245601;245602;245603 150759;150760;150761 150759 2 LLVLEFSKPIIEPLSK Unmodified 1825.0965 0.096473153 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 2 1 1 49.921 48.613 2;3 4.6218E-13 24091 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 193.28 192.03 1289100000 62797000 66683000 56151000 30279000 24021000 27609000 83782000 92239000 91979000 56619000 58129000 49794000 58735000 63856000 62437000 8313000 14029000 8506800 109770000 102700000 101590000 23180000 19775000 16142000 13036 408 12712 245604;245605;245606;245607;245608;245609;245610;245611;245612;245613;245614;245615;245616;245617;245618;245619;245620;245621;245622;245623;245624;245625;245626;245627;245628;245629;245630;245631;245632;245633;245634;245635;245636;245637;245638;245639;245640;245641;245642;245643;245644 150762;150763;150764;150765;150766;150767;150768;150769;150770;150771;150772;150773;150774;150775;150776;150777;150778;150779;150780;150781;150782;150783;150784;150785;150786;150787;150788;150789 150771 28 LLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVK Unmodified 4541.3624 0.36236596 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 2 55.879 54.459 4;5 4.2595E-13 20133 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 95.571 95.548 751010000 7166700 29105000 31479000 163570000 122880000 144070000 8186400 22843000 30218000 0 0 0 10025000 3906200 3026600 0 0 0 382530 0 21115000 56912000 45357000 50763000 13037 542 12713 245645;245646;245647;245648;245649;245650;245651;245652;245653;245654;245655;245656;245657;245658;245659;245660;245661;245662;245663;245664;245665;245666;245667;245668;245669;245670;245671;245672;245673 150790;150791;150792;150793;150794;150795;150796;150797 150794 8 LLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVK Oxidation (M) 4557.3573 0.35728058 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 1 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 1 55.643 54.297 4;5 4.1767E-13 19993 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 97.874 94.621 171020000 0 3808000 0 47896000 35006000 62155000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11615000 10545000 13038 542 12713 245674;245675;245676;245677;245678;245679;245680;245681;245682 150798;150799;150800;150801;150802;150803 150803 327;328;329 6 LLVNTGSLAESTQQSGYSHAIPR Unmodified 2428.2347 0.23465098 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.818 31.28 3 9.5025E-54 14811 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 237.37 233.56 793060000 80128000 58727000 63332000 1954700 1204100 1852300 65159000 51692000 50460000 5022600 0 3816600 64041000 51317000 55419000 0 0 0 87598000 72246000 76833000 2254700 0 0 13039 1482 12714 245683;245684;245685;245686;245687;245688;245689;245690;245691;245692;245693;245694;245695;245696;245697;245698;245699;245700 150804;150805;150806;150807;150808;150809;150810;150811;150812;150813;150814;150815 150810 12 LLVPGALGGLAGLLVANK Unmodified 1675.0396 0.039626976 1410 P33218 yebE Inner membrane protein YebE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.306 53.852 2 3.0658E-09 21648 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 112.13 112.13 148220000 6032000 4100600 5928400 3779200 4604100 4052900 10978000 7323700 10590000 11573000 9768500 10436000 4112700 5051500 6569400 0 0 0 9262200 8594700 8038900 6060200 6111900 5250400 13040 1410 12715 245701;245702;245703;245704;245705;245706;245707;245708;245709;245710;245711;245712;245713;245714;245715;245716;245717;245718;245719;245720;245721 150816;150817;150818;150819 150816 4 LLVPPAWQNNPDMDPELR Unmodified 2104.0412 0.041159893 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 1 2 2 2 49.031 47.742 2;3 1.4543E-13 23607 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 165.7 162.57 379950000 70480000 65560000 63548000 0 0 366840 29525000 26042000 20938000 0 0 0 17157000 13481000 17621000 0 0 1911600 15218000 19568000 18534000 0 0 0 13041 218 12716 245722;245723;245724;245725;245726;245727;245728;245729;245730;245731;245732;245733;245734;245735;245736;245737;245738;245739;245740;245741;245742;245743;245744;245745;245746;245747 150820;150821;150822;150823;150824;150825;150826;150827;150828;150829;150830;150831;150832;150833;150834;150835;150836;150837;150838;150839 150822 20 LLVSELSGVEPK Unmodified 1269.718 0.71801807 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 36.504 35.03 2 1.3575E-05 16663 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.34 126.9 2827900000 392730000 347780000 354040000 0 0 0 607110000 0 0 0 0 0 362940000 402840000 360470000 0 0 0 0 0 0 0 0 0 13042 59 12717 245748;245749;245750;245751;245752;245753;245754 150840;150841;150842;150843;150844;150845 150842 6 LLVSGLCVK Unmodified 987.57869 0.57868781 1607 P52129 rnlA mRNA endoribonuclease LS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 32.219 30.836 2 0.12927 14453 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 43.246 22.964 204660000 23362000 24302000 24112000 0 0 0 26060000 28413000 25755000 0 0 0 10503000 0 0 0 0 0 13965000 15046000 13140000 0 0 0 13043 1607 12718 245755;245756;245757;245758;245759;245760;245761;245762;245763;245764 150846 150846 0 LLVVCGPCSIHDPETALEYAR Unmodified 2399.1614 0.16135138 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 41.625 39.896 3 3.328E-07 19561 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.32 91.869 160850000 0 26390000 29237000 0 0 0 0 53387000 44676000 1974700 0 0 0 0 0 0 0 3717900 0 0 0 0 1465100 0 13044 45 12719 245765;245766;245767;245768;245769;245770;245771 150847;150848;150849;150850 150849 4 LLVVIGPCSIHDPVAAK Unmodified 1787.9968 0.99677588 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 1 1 1 2 2 2 38.922 37.415 2;3 3.1815E-14 17982 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 173.72 168.22 2329200000 415180000 390670000 396600000 5685900 7548100 4915600 113810000 104240000 113730000 0 0 0 122130000 112050000 97274000 4231400 2676200 3197800 146370000 132450000 156430000 0 0 0 13045 639 12720 245772;245773;245774;245775;245776;245777;245778;245779;245780;245781;245782;245783;245784;245785;245786;245787;245788;245789;245790;245791;245792;245793;245794;245795;245796;245797;245798;245799;245800;245801;245802 150851;150852;150853;150854;150855;150856;150857;150858;150859;150860;150861;150862;150863;150864;150865;150866;150867;150868;150869;150870;150871;150872;150873;150874 150871 23 LLWGTANCFTNPR Unmodified 1548.7507 0.75073195 55 P00944 xylA Xylose isomerase yes yes 0 0 0 By matching By MS/MS 1 1 40.296 38.866 2 0.0011816 18840 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.672 63.139 14768000 7439900 7328000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13046 55 12721 245803;245804 150875 150875 0 LLWLNHHYINALPPEYVATHLQWHIEQENIDTR Unmodified 4063.0493 0.04930382 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 3 3 2 3 3 3 3 47.614 46.197 4;5;6 1.3691E-18 22477 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 145.57 144.08 1223900000 45279000 53485000 51422000 0 0 0 165840000 74297000 148630000 0 0 0 113580000 56986000 82965000 0 0 0 128820000 170830000 131790000 0 0 0 13047 92 12722 245805;245806;245807;245808;245809;245810;245811;245812;245813;245814;245815;245816;245817;245818;245819;245820;245821;245822;245823;245824;245825;245826;245827;245828;245829;245830;245831;245832;245833;245834;245835 150876;150877;150878;150879;150880;150881;150882;150883;150884;150885;150886;150887;150888;150889;150890;150891;150892;150893;150894;150895;150896 150886 21 LLWSSNLNVDGMK Unmodified 1475.7442 0.74424959 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.972 42.178 2 5.5574E-07 19708 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 145.25 139.28 257660000 14964000 10689000 11180000 6508700 7224200 5243900 30706000 29440000 23638000 17861000 17983000 16769000 14786000 15482000 0 0 0 0 18848000 0 0 9331600 0 7000300 13048 189 12723 245836;245837;245838;245839;245840;245841;245842;245843;245844;245845;245846;245847;245848;245849;245850;245851;245852 150897;150898;150899;150900;150901;150902;150903;150904 150904 8 LLWWPLLR Unmodified 1095.6593 0.6593214 1223 P23871 hemH Ferrochelatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.327 53.871 2 0.00091658 21768 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 117.7 117.7 55451000 3052600 2070600 1761000 2642700 2524200 2548200 2876200 4650800 3989000 5490400 3552300 5311900 0 2226300 1975600 0 0 0 3741800 0 3559200 0 1698000 1780700 13049 1223 12724 245853;245854;245855;245856;245857;245858;245859;245860;245861;245862;245863;245864;245865;245866;245867;245868;245869;245870 150905 150905 1 LLYCSFCGK Unmodified 1146.5202 0.52018666 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.35 27.073 2 0.0009812 12436 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.253 94.282 948460000 54514000 56403000 52908000 3829300 4218400 3766000 77743000 81295000 66651000 12626000 9244500 11234000 73616000 64658000 81361000 4749600 3501400 3602300 91297000 92876000 86244000 3805300 3529400 4793100 13050 244 12725 245871;245872;245873;245874;245875;245876;245877;245878;245879;245880;245881;245882;245883;245884;245885;245886;245887;245888;245889;245890;245891;245892;245893;245894 150906;150907;150908;150909;150910;150911;150912;150913;150914;150915;150916;150917;150918;150919;150920;150921;150922;150923 150916 18 LLYECNPMAFLAEQAGGK Unmodified 2010.9543 0.95431872 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 53.274 51.833 2;3 1.1066E-29 25667 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 222.74 217.02 1382400000 86527000 80168000 75813000 1817400 1599800 1371000 99751000 99991000 107750000 6635000 6297500 3764600 125460000 124030000 121230000 0 0 0 146090000 143270000 150860000 0 0 0 13051 499 12726 245895;245896;245897;245898;245899;245900;245901;245902;245903;245904;245905;245906;245907;245908;245909;245910;245911;245912;245913;245914;245915;245916;245917;245918;245919;245920;245921;245922;245923;245924;245925;245926 150924;150925;150926;150927;150928;150929;150930;150931;150932;150933;150934;150935;150936;150937;150938;150939;150940;150941;150942;150943;150944;150945;150946;150947;150948 150927 25 LLYSPEWLETQQQFK Unmodified 1908.9622 0.96216452 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 48.51 47.043 2;3 3.4014E-07 16901 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 152.7 143.81 117270000 0 0 0 27230000 30020000 29624000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9547800 10299000 10547000 13052 1904 12727 245927;245928;245929;245930;245931;245932;245933;245934;245935;245936;245937;245938 150949;150950;150951;150952;150953;150954;150955;150956;150957;150958;150959;150960 150958 12 LMAEWATDAVCR Unmodified 1421.6432 0.64315534 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.583 34.758 2 1.8295E-05 16966 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 123.86 118.08 616040000 4929200 3107700 0 0 0 0 107210000 95812000 96297000 4977400 3809400 4497300 60237000 60790000 48512000 0 0 0 40586000 43495000 38138000 1779600 1869400 0 13053 506 12728 245939;245940;245941;245942;245943;245944;245945;245946;245947;245948;245949;245950;245951;245952;245953;245954 150961;150962;150963;150964;150965 150965 5 LMAITPAMR Unmodified 1002.5354 0.53544279 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.972 28.536 2 0.00019889 10574 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 126.67 116.2 306730000 19960000 19782000 20501000 3266100 4454900 5256100 17921000 19109000 21326000 7690300 9039200 8478600 16309000 17533000 14243000 4015100 0 2595600 24637000 25305000 23410000 6800800 7030900 8067600 13054 1909 12729 245955;245956;245957;245958;245959;245960;245961;245962;245963;245964;245965;245966;245967;245968;245969;245970;245971;245972;245973;245974;245975;245976;245977 150966;150967;150968;150969;150970;150971;150972;150973;150974;150975;150976;150977;150978;150979;150980;150981;150982;150983;150984;150985 150972 7 LMANWLK Unmodified 874.47349 0.47349446 1865 P76502 sixA Phosphohistidine phosphatase SixA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.626 31.271 2 0.014119 14774 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.087 58.731 177310000 19956000 18779000 15567000 631440 713880 451060 0 6847100 10064000 0 0 0 13669000 13610000 12766000 0 0 0 19795000 21689000 22775000 0 0 0 13055 1865 12730 245978;245979;245980;245981;245982;245983;245984;245985;245986;245987;245988;245989;245990;245991;245992 150986;150987;150988;150989;150990;150991;150992;150993;150994;150995 150990 10 LMAPLLK Unmodified 784.48808 0.48808189 1101 P15038 helD Helicase IV yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 30.023 29.12 2 0.0075261 13691 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.939 90.939 19219000 5964400 6154500 4782100 0 0 0 0 0 0 0 0 0 1849400 0 0 0 468500 0 0 0 0 0 0 0 13056 1101 12731 245993;245994;245995;245996;245997 150996;150997 150996 2 LMASHPGLVVELVPMVTR Unmodified 1948.0638 0.063809591 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 3 2 46.329 44.906 2;3 1.385E-09 21910 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 112.3 109.01 500080000 69760000 67245000 55411000 0 0 0 33567000 26453000 29056000 0 0 0 33356000 27138000 28820000 0 0 0 38336000 48462000 42476000 0 0 0 13057 137 12732 245998;245999;246000;246001;246002;246003;246004;246005;246006;246007;246008;246009;246010;246011;246012;246013;246014;246015;246016;246017;246018;246019 150998;150999;151000;151001;151002;151003;151004 151002 7 LMATQAWLEAR Unmodified 1288.6598 0.65979168 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 37.211 35.666 2 3.7689E-10 17315 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.47 147.08 746070000 173050000 164590000 131840000 0 0 0 0 0 102400000 0 0 0 62379000 55106000 56704000 0 0 0 0 0 0 0 0 0 13058 43 12733 246020;246021;246022;246023;246024;246025;246026 151005;151006;151007;151008 151005 4 LMDDTIAQVQTSGEAEK Unmodified 1834.8619 0.86185812 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 29.502 28.246 2;3 1.2423E-61 12980 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 299.2 283.83 800730000 173510000 200280000 193790000 0 0 0 20504000 21972000 22477000 0 0 0 29122000 24142000 20646000 0 0 0 32987000 26819000 34488000 0 0 0 13059 1501 12734 246027;246028;246029;246030;246031;246032;246033;246034;246035;246036;246037;246038;246039;246040;246041;246042;246043;246044;246045;246046;246047;246048;246049;246050 151009;151010;151011;151012;151013;151014;151015;151016;151017;151018;151019;151020;151021;151022;151023;151024 151020 15 LMDEQQQQVK Unmodified 1245.6023 0.60233638 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.733 13.573 2 2.4777E-09 4035 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 198.07 186.48 162090000 12149000 14478000 10949000 0 0 0 13015000 13131000 11844000 0 0 0 15075000 10903000 12477000 0 0 0 15178000 15065000 17828000 0 0 0 13060 1617 12735 246051;246052;246053;246054;246055;246056;246057;246058;246059;246060;246061;246062 151025;151026;151027;151028;151029;151030;151031;151032;151033 151029 9 LMDLGCYR Unmodified 1026.4627 0.46267178 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.443 28.133 2 4.6205E-09 12923 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 204.37 200.44 4826000000 655250000 643200000 532360000 17519000 15058000 18992000 222810000 223930000 208800000 44015000 41338000 40913000 264440000 263410000 257570000 25687000 21618000 22078000 415830000 436790000 376270000 24392000 24861000 28897000 13061 368 12736 246063;246064;246065;246066;246067;246068;246069;246070;246071;246072;246073;246074;246075;246076;246077;246078;246079;246080;246081;246082;246083;246084;246085;246086;246087 151034;151035;151036;151037;151038;151039;151040;151041;151042;151043;151044;151045;151046;151047;151048;151049;151050;151051;151052;151053;151054;151055 151051 21 LMDLSINK Unmodified 932.5001 0.50010314 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.088 27.628 2 6.927E-05 13059 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 167.24 133.5 14477000000 1420000000 1414300000 1285900000 2629000 2648700 2731100 3070100000 3065100000 3195300000 30587000 28918000 25635000 145880000 138610000 135910000 0 0 0 168780000 176710000 166780000 0 0 0 13062 1755;1756 12737 246088;246089;246090;246091;246092;246093;246094;246095;246096;246097;246098;246099;246100;246101;246102;246103;246104;246105 151056;151057;151058;151059;151060;151061;151062;151063;151064;151065;151066;151067;151068;151069;151070;151071 151060 16 LMDLSINK Oxidation (M) 948.49502 0.49501776 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 2 1 23.93 23.543 2 0.016513 8606 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 74.255 60.988 260230000 15016000 13741000 16940000 0 0 0 68818000 74764000 68011000 0 0 0 0 0 0 0 0 0 0 2942700 0 0 0 0 13063 1755;1756 12737 246106;246107;246108;246109;246110;246111;246112;246113;246114;246115;246116 151072;151073;151074;151075;151076 151072 609 5 LMDLSINKNWIDK Oxidation (M) 1604.8232 0.82322819 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 1 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 29.56 28.114 2 0.062832 13210 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 42.001 22.869 37534000 12080000 11168000 11044000 521510 663550 0 0 0 0 2056200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13064 1755;1756 12738 246117;246118;246119;246120;246121;246122 151077;151078 151077 609 2 LMDLSINKNWIDKEEYPQSAAIDLR Unmodified 2961.4906 0.49060767 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 2 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 45.084 43.142 4 0.071124 17322 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 33.594 31.281 21361000 0 0 0 2171600 1896100 1922300 0 0 0 7618400 7752500 0 0 0 0 0 0 0 0 0 0 0 0 0 13065 1755;1756 12739 246123;246124;246125;246126;246127 151079 151079 1 LMDLTTLNDDDTDEK Unmodified 1737.7615 0.76147538 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.232 35.558 2 5.9308E-27 17376 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 231.92 228.97 2717400000 100750000 91380000 81212000 0 0 0 366090000 388670000 348260000 0 0 0 240170000 211670000 163000000 0 0 0 258060000 248020000 220070000 0 0 0 13066 257 12740 246128;246129;246130;246131;246132;246133;246134;246135;246136;246137;246138;246139 151080;151081;151082;151083;151084;151085;151086;151087;151088;151089;151090;151091 151081 12 LMDLTTLNDDDTDEKVIALCHQAK Unmodified 2758.3153 0.31534542 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 38.527 36.84 3 1.5739E-06 17153 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 95.48 95.107 75804000 2924900 4254400 0 0 0 0 12714000 12319000 12908000 0 0 0 5983900 6343600 4185700 0 0 0 0 7707500 6463100 0 0 0 13067 257 12741 246140;246141;246142;246143;246144;246145;246146;246147;246148;246149 151092 151092 1 LMDSIAK Unmodified 776.41023 0.4102255 824 P0ADZ7 yajC UPF0092 membrane protein YajC yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 1 2 2 1 16.952 17.447 1;2 0.0013364 6253 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.02 39.191 1938600000 0 0 0 8235400 6734400 6595300 266340000 271950000 219950000 56988000 50816000 35277000 142380000 138130000 153210000 5057400 4421600 4810100 250310000 253450000 33485000 12039000 11467000 6937700 13068 824 12742 246150;246151;246152;246153;246154;246155;246156;246157;246158;246159;246160;246161;246162;246163;246164;246165;246166;246167;246168;246169;246170;246171;246172;246173;246174;246175;246176;246177;246178;246179;246180;246181;246182;246183;246184;246185;246186;246187;246188 151093;151094;151095;151096;151097;151098;151099;151100;151101;151102;151103;151104;151105;151106;151107;151108;151109 151106 16 LMDSIAKGDEVLTNGGLVGR Unmodified 2044.0623 0.062289266 824 P0ADZ7 yajC UPF0092 membrane protein YajC yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 1 1 1 2 2 2 38.032 36.395 2;3 8.2193E-15 14072 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 148.15 143.88 233080000 0 0 0 29419000 1914000 1746900 0 0 0 29259000 0 32366000 0 0 0 12440000 8578500 9726400 0 0 0 31660000 36394000 39571000 13069 824 12743 246189;246190;246191;246192;246193;246194;246195;246196;246197;246198;246199;246200;246201;246202;246203;246204;246205 151110;151111;151112;151113;151114;151115;151116;151117;151118 151117 8 LMDWNMSAR Unmodified 1122.495 0.49503454 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.178 31.739 2 0.00033848 14889 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.5 110.56 296600000 37546000 36672000 35091000 0 0 0 25237000 28089000 23665000 0 0 0 19088000 19194000 18432000 0 0 0 19371000 17632000 16583000 0 0 0 13070 1830 12744 246206;246207;246208;246209;246210;246211;246212;246213;246214;246215;246216;246217 151119;151120;151121;151122;151123;151124;151125 151123 4 LMEAAVNK Unmodified 874.45824 0.45823833 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 13.447 14.311 2 0.0045816 4428 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 88.029 56.093 778850000 72231000 0 0 0 0 0 0 0 105850000 0 0 0 0 0 96265000 0 0 0 163930000 172640000 167940000 0 0 0 13071 1489 12745 246218;246219;246220;246221;246222;246223 151126;151127;151128;151129;151130 151126 5 LMEANPNAGIIQSSPK Unmodified 1668.8505 0.85050558 1645 P62517 mdoH Glucans biosynthesis glucosyltransferase H yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.565 26.374 2 2.3535E-10 12219 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 150.49 141.16 104710000 0 0 7827800 0 0 0 9588900 9731700 9568800 0 0 0 10112000 9758400 6066000 0 0 0 11833000 15163000 15058000 0 0 0 13072 1645 12746 246224;246225;246226;246227;246228;246229;246230;246231;246232;246233;246234 151131;151132;151133;151134;151135;151136;151137;151138;151139;151140;151141 151133 11 LMEEEGILAGISSGAAVAAALK Unmodified 2100.1137 0.11365613 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1 1 2 2 2 1 2 2 2 2 3 54.609 53.179 2;3 1.0129E-21 26404 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 161.51 160.05 4118300000 509900000 435320000 400290000 9114100 4818400 2582500 344660000 326990000 352580000 0 0 0 123500000 289640000 285260000 0 0 0 345530000 319390000 368750000 0 0 0 13073 666 12747 246235;246236;246237;246238;246239;246240;246241;246242;246243;246244;246245;246246;246247;246248;246249;246250;246251;246252;246253;246254;246255;246256;246257;246258;246259;246260;246261;246262;246263 151142;151143;151144;151145;151146;151147;151148;151149;151150;151151;151152;151153;151154;151155;151156;151157;151158;151159;151160;151161;151162;151163;151164;151165;151166 151142 25 LMEIAQQQHAQQQTAGADASANNAK Unmodified 2623.2409 0.24087535 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 2 3 3 1 1 2 3 3 3 1 1 3 3 3 16.564 17.213 2;3;4 8.1637E-127 6204 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 459.77 414.65 3707800000 359370000 340810000 291330000 0 0 0 318150000 363600000 336370000 10924000 4249800 6388000 262390000 282400000 259020000 918380 1207200 0 282460000 310010000 278160000 0 0 0 13074 293 12748 246264;246265;246266;246267;246268;246269;246270;246271;246272;246273;246274;246275;246276;246277;246278;246279;246280;246281;246282;246283;246284;246285;246286;246287;246288;246289;246290;246291;246292;246293;246294;246295;246296;246297;246298;246299;246300;246301;246302;246303;246304 151167;151168;151169;151170;151171;151172;151173;151174;151175;151176;151177;151178;151179;151180;151181;151182;151183;151184;151185;151186;151187;151188;151189;151190;151191;151192;151193;151194;151195;151196;151197;151198;151199 151170 33 LMEIAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVK Unmodified 4113.8822 0.88215923 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 2 3 2 3 3 3 3 3 3 1 1 1 32.958 31.346 3;4;5 2.7628E-72 14852 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 249.41 242.1 5179200000 505740000 370070000 368830000 5496600 5326000 7445600 445730000 429030000 409060000 52717000 55839000 56936000 376260000 338080000 281020000 0 0 0 510330000 454290000 470320000 13309000 11121000 12238000 13075 293 12749 246305;246306;246307;246308;246309;246310;246311;246312;246313;246314;246315;246316;246317;246318;246319;246320;246321;246322;246323;246324;246325;246326;246327;246328;246329;246330;246331;246332;246333;246334;246335;246336;246337;246338;246339;246340;246341;246342;246343;246344;246345;246346;246347;246348;246349;246350;246351;246352;246353 151200;151201;151202;151203;151204;151205;151206;151207;151208;151209;151210;151211;151212;151213;151214;151215;151216;151217;151218;151219;151220;151221;151222;151223;151224;151225;151226;151227 151222 28 LMEIAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVK Oxidation (M) 4129.8771 0.87707386 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 1 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 29.211 27.91 4 2.5709E-07 12906 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.933 66.904 85710000 9239100 0 5275700 0 0 0 11586000 8509900 10639000 0 0 0 8077100 0 7459700 0 0 0 7754300 8449600 8719400 0 0 0 13076 293 12749 246354;246355;246356;246357;246358;246359;246360;246361;246362;246363 151228 151228 135 1 LMEIAQQQHAQQQTAGADASANNAKDDDVVDAEFEEVKDK Unmodified 4357.0041 0.0040652832 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 30.672 29.099 4;5 2.1657E-38 13576 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 197.35 197.08 2495300000 227150000 199410000 191070000 2157900 0 3347500 226950000 215050000 225060000 17784000 19840000 15849000 151480000 154910000 127320000 0 0 0 254750000 207440000 252680000 3027000 0 0 13077 293 12750 246364;246365;246366;246367;246368;246369;246370;246371;246372;246373;246374;246375;246376;246377;246378;246379;246380;246381;246382;246383;246384;246385;246386;246387;246388;246389;246390;246391;246392;246393;246394;246395;246396 151229;151230;151231;151232;151233;151234;151235;151236;151237;151238;151239;151240;151241;151242;151243;151244;151245;151246;151247;151248;151249;151250;151251;151252;151253 151244 25 LMEQITTSDELIDFLTLPGYR Unmodified 2454.2352 0.23522783 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 55.745 54.264 2;3 8.5369E-75 26750 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 305.23 301.16 3599000000 1284200000 483890000 522210000 0 0 0 269930000 72006000 235910000 0 0 0 106690000 114520000 105840000 0 0 0 133740000 118450000 151570000 0 0 0 13078 195 12751 246397;246398;246399;246400;246401;246402;246403;246404;246405;246406;246407;246408;246409;246410;246411;246412;246413;246414;246415;246416;246417;246418 151254;151255;151256;151257;151258;151259;151260;151261;151262;151263;151264;151265;151266;151267;151268;151269;151270;151271 151266 18 LMEQITTSDELIDFLTLPGYR Oxidation (M) 2470.2301 0.23014246 195 P08997 aceB Malate synthase A yes yes 0 1 0 By MS/MS By matching By matching 1 1 1 55.481 54.075 2 2.0924E-05 26950 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.54 77.103 24126000 8155400 7415400 8555300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13079 195 12751 246419;246420;246421 151272 151272 65 0 LMERPIVVANGK Unmodified 1325.7489 0.74894104 1874 P76569 yfgD Uncharacterized protein YfgD yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.459 18.944 3 0.0022048 7076 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 65.03 62.243 90813000 9370900 8669800 8671600 0 0 0 4707900 10914000 7686600 521340 0 0 0 10848000 8526000 0 0 0 12232000 0 8664700 0 0 0 13080 1874 12752 246422;246423;246424;246425;246426;246427;246428;246429;246430;246431;246432;246433 151273;151274;151275 151273 3 LMEVIREELELVR Unmodified 1627.8967 0.89672749 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 47.58 46.077 2;3 1.1587E-09 21396 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 174.1 159.94 667320000 47238000 36761000 36010000 0 0 0 50189000 51108000 42351000 18522000 17797000 21606000 48456000 42527000 43529000 0 0 0 66209000 52674000 59341000 11300000 10349000 11356000 13081 882 12753 246434;246435;246436;246437;246438;246439;246440;246441;246442;246443;246444;246445;246446;246447;246448;246449;246450;246451;246452;246453;246454;246455;246456;246457;246458;246459;246460;246461;246462;246463;246464;246465;246466 151276;151277;151278;151279;151280;151281;151282;151283;151284;151285;151286;151287;151288;151289;151290;151291;151292 151292 17 LMFASDIHGSLPATER Unmodified 1743.8614 0.86140461 1710 P67095 yfcE Phosphodiesterase YfcE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 1 33.435 31.917 2;3 1.2517E-30 15116 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 251.3 250.89 1090700000 153620000 135430000 131550000 3596500 0 1586200 78993000 80856000 72349000 0 0 0 77853000 71912000 63788000 0 0 0 66071000 69558000 77699000 2826800 1905900 1162100 13082 1710 12754 246467;246468;246469;246470;246471;246472;246473;246474;246475;246476;246477;246478;246479;246480;246481;246482;246483;246484;246485;246486;246487;246488;246489;246490;246491;246492;246493;246494;246495;246496 151293;151294;151295;151296;151297;151298;151299;151300;151301;151302;151303;151304;151305;151306;151307;151308;151309 151302 17 LMFHHWFG Unmodified 1073.4905 0.49054151 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.225 33.504 3 0.13448 15822 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 26.796 26.796 188510000 6681600 5821600 4417000 1482800 1646200 1816300 12707000 14476000 14843000 6501400 8048600 7796900 10785000 8817700 10706000 0 0 0 17529000 22389000 17305000 6051200 3850300 4833600 13083 844 12755 246497;246498;246499;246500;246501;246502;246503;246504;246505;246506;246507;246508;246509;246510;246511;246512;246513;246514;246515;246516;246517 151310;151311;151312;151313;151314;151315;151316;151317;151318 151315 9 LMFTIGK Unmodified 808.4517 0.45169638 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.862 32.423 2 0.017236 15444 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 79.939 55.435 143390000 11531000 13611000 14622000 0 0 0 16679000 16308000 18717000 0 0 0 9191100 8325400 9102100 0 0 0 8419500 8549800 8338000 0 0 0 13084 709 12756 246518;246519;246520;246521;246522;246523;246524;246525;246526;246527;246528;246529 151319;151320;151321;151322;151323;151324;151325;151326;151327;151328;151329;151330 151325 12 LMFTIGKDPVVANK Unmodified 1531.8432 0.84323535 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.571 32.132 3 7.7167E-06 15658 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 101.32 99.694 202020000 20597000 18738000 15421000 0 0 0 21365000 22194000 26292000 0 0 0 14634000 13842000 10844000 0 0 0 11736000 12352000 14006000 0 0 0 13085 709 12757 246530;246531;246532;246533;246534;246535;246536;246537;246538;246539;246540;246541 151331;151332;151333;151334;151335;151336;151337;151338;151339 151332 9 LMGAEVIPVHSGSATLK Unmodified 1708.9182 0.91819121 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 2 2 2 2 2 1 1 2 2 2 1 2 2 2 1 1 1 29.603 28.199 2;3 9.3843E-14 13062 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 200.82 197.93 1892600000 444200000 416130000 397110000 9045200 6853200 7999700 76296000 68840000 64561000 10767000 8728500 7907100 52677000 53564000 45483000 0 3090000 0 62350000 65555000 80403000 3569700 4406600 3096700 13086 405 12758 246542;246543;246544;246545;246546;246547;246548;246549;246550;246551;246552;246553;246554;246555;246556;246557;246558;246559;246560;246561;246562;246563;246564;246565;246566;246567;246568;246569;246570;246571;246572;246573;246574;246575;246576;246577;246578 151340;151341;151342;151343;151344;151345;151346;151347;151348;151349;151350;151351;151352;151353;151354;151355;151356;151357;151358;151359;151360;151361;151362;151363;151364;151365;151366 151357 27 LMGEQFVTGETIAEALANAR Unmodified 2120.0572 0.057203888 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 54.437 53.118 2;3 5.2701E-46 21252 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 261.67 244.08 908480000 25514000 43945000 49212000 19191000 22341000 21602000 23355000 7037300 10630000 20973000 18216000 33529000 41485000 30837000 31590000 10931000 10873000 12929000 82796000 87118000 85139000 82352000 70222000 66668000 13087 215 12759 246579;246580;246581;246582;246583;246584;246585;246586;246587;246588;246589;246590;246591;246592;246593;246594;246595;246596;246597;246598;246599;246600;246601;246602;246603;246604;246605;246606;246607;246608;246609;246610;246611;246612;246613;246614;246615;246616;246617;246618;246619;246620 151367;151368;151369;151370;151371;151372;151373;151374;151375;151376;151377;151378;151379;151380;151381;151382;151383;151384;151385;151386;151387;151388;151389;151390;151391 151378 24 LMGESSGQTYR Unmodified 1227.5554 0.55538619 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.576 15.363 2 0.0022754 5172 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.258 77.477 92313000 22639000 28716000 21899000 387920 352270 0 3413400 2951400 3838100 0 0 0 1288500 0 1917500 0 0 0 2286700 2622600 0 0 0 0 13088 1181 12760 246621;246622;246623;246624;246625;246626;246627;246628;246629;246630;246631;246632 151392 151392 1 LMGFEAPGEAK Unmodified 1148.5536 0.55359527 850 P0AED9 dcm DNA-cytosine methyltransferase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 13.404 14.203 3 0.17187 4369 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 10.549 5.6082 292080000 109940000 98199000 83946000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13089 850 12761 246633;246634;246635 151393 151393 1 LMGFGHR Unmodified 816.40648 0.40647753 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 15.351 15.99 2 0.0015509 5283 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128 128 597950000 0 220420000 212130000 1073300 1066000 0 5335900 0 0 0 3020900 3778700 37593000 32827000 0 0 0 0 0 79339000 0 1362000 0 0 13090 657 12762 246636;246637;246638;246639;246640;246641;246642;246643;246644;246645;246646 151394;151395;151396;151397 151394 4 LMGFSGR Unmodified 766.37959 0.37959407 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 22.074 22.071 2 0.0089075 6553 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 88.35 88.35 105130000 0 0 0 0 16943000 14242000 0 0 0 0 0 0 0 32987000 29991000 0 5932100 5032200 0 0 0 0 0 0 13091 1383 12763 246647;246648;246649;246650;246651;246652 151398;151399;151400;151401 151398 3 LMGGGAGFAQQPLFSSK Unmodified 1694.845 0.84502627 805 P0ADT2 ygiB UPF0441 protein YgiB yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.107 38.197 2 4.2135E-14 15123 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 171.57 163.09 271510000 11085000 0 0 2105600 2334400 1680900 28212000 20370000 30105000 11857000 15594000 15925000 16098000 13822000 15004000 0 0 0 21297000 24865000 23971000 5758900 6106000 5318500 13092 805 12764 246653;246654;246655;246656;246657;246658;246659;246660;246661;246662;246663;246664;246665;246666;246667;246668;246669;246670;246671 151402;151403;151404;151405;151406;151407;151408;151409;151410;151411;151412;151413 151405 10 LMGMTPTGNGR Unmodified 1133.5321 0.53214833 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 20.077 20.475 2 0.0036388 7566 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 66.299 40.472 52724000 0 0 0 0 0 0 5155100 5068800 6712700 0 0 0 5836000 4429400 4101000 0 0 0 6177200 7567600 7676300 0 0 0 13093 1019 12765 246672;246673;246674;246675;246676;246677;246678;246679;246680 151414;151415;151416;151417 151417 2 LMGNDVTDEQAK Unmodified 1319.6027 0.60273031 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.847 16.663 2 7.6803E-09 5921 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.33 170.46 165530000 19177000 21772000 22666000 0 0 0 13472000 12805000 12043000 0 0 0 10301000 8737000 8587900 0 0 0 12454000 10866000 12652000 0 0 0 13094 1006 12766 246681;246682;246683;246684;246685;246686;246687;246688;246689;246690;246691;246692 151418;151419;151420;151421;151422;151423;151424;151425;151426 151418 9 LMHIHENRPGVLTALNK Unmodified 1942.0571 0.057084729 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 1 1 2 3 2 2 2 4 2 2 2 20.129 20.563 2;3;4;5 1.4385E-18 8087 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 185.32 176.57 1872300000 375010000 558190000 379080000 0 1275500 1160900 120580000 116260000 86689000 0 0 0 62369000 26907000 48228000 0 0 0 34895000 30629000 30981000 0 0 0 13095 555 12767 246693;246694;246695;246696;246697;246698;246699;246700;246701;246702;246703;246704;246705;246706;246707;246708;246709;246710;246711;246712;246713;246714;246715;246716;246717;246718;246719;246720;246721;246722;246723;246724;246725;246726 151427;151428;151429;151430;151431;151432;151433;151434;151435;151436;151437;151438;151439;151440;151441;151442;151443;151444;151445;151446;151447;151448 151445 22 LMIIDWVR Oxidation (M) 1060.5739 0.57393679 1456 P37095 pepB Peptidase B yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 45.789 44.329 2 0.012372 22517 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 79.597 70.009 107940000 7233500 8130200 4227300 0 0 0 12910000 10988000 9713200 0 0 0 9349400 9852600 8461600 0 0 0 9396400 9279000 8397900 0 0 0 13096 1456 12768 246727;246728;246729;246730;246731;246732;246733;246734;246735;246736;246737;246738;246739;246740;246741;246742;246743;246744;246745;246746;246747;246748;246749 151449;151450;151451;151452;151453;151454;151455;151456 151450 555 5 LMIIDWVR Unmodified 1044.579 0.57902216 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 50.377 49.095 2 8.2926E-05 23097 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 164.53 143.97 2191700000 107260000 107930000 99390000 0 0 0 228890000 211320000 206230000 0 0 0 208040000 179170000 212930000 2296000 0 0 212720000 204930000 210630000 0 0 0 13097 1456 12768 246750;246751;246752;246753;246754;246755;246756;246757;246758;246759;246760;246761;246762 151457;151458;151459;151460;151461;151462;151463;151464;151465;151466;151467;151468 151466 12 LMIQEMEDTLVEVR Unmodified 1704.8426 0.84264301 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 2 2 1 2 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 2 1 2 2 2 51.455 50.239 2;3 1.6802E-08 24644 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.12 149.1 336130000 18895000 15415000 6069600 19061000 21135000 20085000 23847000 24591000 24030000 5616300 18832000 22233000 10738000 9612100 11640000 3516800 1785900 1883800 11868000 19541000 12156000 11751000 13202000 8629400 13098 956 12769 246763;246764;246765;246766;246767;246768;246769;246770;246771;246772;246773;246774;246775;246776;246777;246778;246779;246780;246781;246782;246783;246784;246785;246786;246787;246788;246789;246790;246791;246792;246793;246794;246795;246796;246797;246798;246799;246800 151469;151470;151471;151472;151473;151474;151475;151476;151477;151478;151479;151480 151480 11 LMLANGQHEVEFPVDQCMNFHADNLSLHENGMR Unmodified 3852.7229 0.72290236 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 41.23 39.323 5 0.10269 13783 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 28.443 26.833 40634000 0 0 0 4652000 0 4818800 0 0 0 0 1496400 1810900 0 0 0 0 0 0 8461700 8513300 8279700 0 2601600 0 13099 1343 12770 246801;246802;246803;246804;246805;246806;246807;246808 151481 151481 1 LMLEYIADNER Unmodified 1365.6599 0.65985126 1036 P0C079 relB Antitoxin RelB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.908 37.211 2 1.9897E-07 17226 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 166.07 145.37 260110000 24635000 21335000 23352000 1632900 1980400 2166900 25047000 25006000 25325000 0 0 0 17006000 15360000 15988000 0 0 0 22730000 19282000 17447000 0 0 1816900 13100 1036 12771 246809;246810;246811;246812;246813;246814;246815;246816;246817;246818;246819;246820;246821;246822;246823;246824 151482;151483;151484;151485;151486;151487;151488;151489;151490;151491;151492;151493 151493 12 LMLEYIADNERLPFK Unmodified 1850.9601 0.96005603 1036 P0C079 relB Antitoxin RelB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 46.734 45.065 3 5.4206E-06 16014 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 80.706 75.535 33129000 0 0 0 7672500 8454100 7593000 0 0 0 0 0 2450700 0 0 0 0 0 0 0 0 0 4066200 0 2892000 13101 1036 12772 246825;246826;246827;246828;246829;246830 151494;151495;151496;151497 151497 4 LMLGQLQADSGR Unmodified 1287.6605 0.66051996 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.146 29.61 2 9.5995E-05 13262 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 113.93 56.645 253410000 0 0 0 1530200 0 0 31673000 34430000 0 0 0 0 27954000 30599000 32093000 0 0 0 46430000 0 45194000 1220700 1447000 840940 13102 1564 12773 246831;246832;246833;246834;246835;246836;246837;246838;246839;246840;246841 151498;151499 151499 2 LMLLAPIIK Unmodified 1010.6562 0.65620985 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.934 47.74 2 0.0011835 17735 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 91.041 91.041 437520000 28013000 28113000 21827000 2038900 2146400 1988400 23820000 21048000 17291000 7465700 6182400 8338900 19575000 16270000 17029000 57743000 40194000 48735000 16480000 20119000 21876000 4355500 3338800 3531300 13103 222 12774 246842;246843;246844;246845;246846;246847;246848;246849;246850;246851;246852;246853;246854;246855;246856;246857;246858;246859;246860;246861;246862;246863;246864;246865 151500;151501;151502;151503;151504;151505;151506;151507;151508;151509;151510;151511;151512;151513;151514;151515;151516;151517;151518 151500 19 LMLPAWLGAGTALQK Unmodified 1568.8749 0.87486983 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 53.409 51.97 2;3 9.5067E-07 24348 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 141.08 140.82 1755200000 227990000 220970000 242080000 694670 0 0 135540000 134310000 125570000 0 0 0 110560000 127740000 118100000 0 0 0 89578000 106710000 115400000 0 0 0 13104 43 12775 246866;246867;246868;246869;246870;246871;246872;246873;246874;246875;246876;246877;246878;246879;246880;246881;246882;246883;246884;246885;246886;246887;246888;246889;246890 151519;151520;151521;151522;151523;151524;151525;151526;151527;151528;151529;151530;151531;151532;151533;151534;151535;151536;151537;151538;151539;151540;151541 151540 23 LMLPISLSFDHR Unmodified 1427.7595 0.75950572 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 5 7 3 4 4 4 4 4 4 3 2 2 2 2 5 3 4 3 6 5 48.272 46.896 2;3 7.5854E-09 22476 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 171.62 170.24 42439000000 1450000000 1378500000 1189000000 4483100000 4015500000 3923400000 1234400000 1204700000 1248600000 544480000 599060000 598370000 973060000 868760000 787950000 367670000 317650000 476330000 1517400000 1223600000 1362400000 4366800000 4783000000 3525000000 13105 133 12776 246891;246892;246893;246894;246895;246896;246897;246898;246899;246900;246901;246902;246903;246904;246905;246906;246907;246908;246909;246910;246911;246912;246913;246914;246915;246916;246917;246918;246919;246920;246921;246922;246923;246924;246925;246926;246927;246928;246929;246930;246931;246932;246933;246934;246935;246936;246937;246938;246939;246940;246941;246942;246943;246944;246945;246946;246947;246948;246949;246950;246951;246952;246953;246954;246955;246956;246957;246958;246959;246960;246961;246962;246963;246964;246965;246966;246967;246968;246969;246970;246971;246972;246973;246974;246975;246976;246977 151542;151543;151544;151545;151546;151547;151548;151549;151550;151551;151552;151553;151554;151555;151556;151557;151558;151559;151560;151561;151562;151563;151564;151565;151566;151567;151568;151569;151570;151571;151572;151573;151574;151575;151576;151577;151578;151579;151580;151581;151582;151583;151584;151585;151586;151587;151588;151589;151590;151591;151592;151593;151594;151595;151596;151597;151598;151599;151600;151601;151602;151603;151604;151605;151606;151607;151608;151609;151610;151611;151612;151613;151614;151615;151616;151617;151618;151619;151620 151609 76 LMLPISLSFDHR Oxidation (M) 1443.7544 0.75442035 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 5 7 7 4 2 2 1 2 2 2 3 4 1 2 1 2 2 2 4 5 4 46.039 44.562 2;3 1.5866E-15 15546 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 171.56 145.94 2359800000 34645000 48747000 40379000 261480000 217440000 258110000 62852000 62346000 55505000 293750000 1803000 5817600 30371000 30393000 33681000 5683100 9082900 5191500 50070000 47904000 44980000 297600000 230400000 231570000 13106 133 12776 246978;246979;246980;246981;246982;246983;246984;246985;246986;246987;246988;246989;246990;246991;246992;246993;246994;246995;246996;246997;246998;246999;247000;247001;247002;247003;247004;247005;247006;247007;247008;247009;247010;247011;247012;247013;247014;247015;247016;247017;247018;247019;247020;247021;247022;247023;247024;247025;247026;247027;247028;247029;247030;247031;247032;247033;247034;247035;247036;247037;247038;247039;247040;247041;247042;247043;247044;247045;247046;247047 151621;151622;151623;151624;151625;151626;151627;151628;151629;151630;151631;151632;151633;151634;151635;151636;151637;151638;151639;151640;151641;151642;151643;151644;151645;151646;151647;151648;151649;151650;151651;151652;151653;151654;151655;151656;151657;151658;151659;151660;151661;151662;151663;151664;151665;151666;151667;151668;151669;151670;151671;151672;151673;151674;151675;151676;151677;151678;151679;151680;151681;151682;151683;151684;151685;151686;151687 151657 44 64 LMLQSAQHIADEVGGVVLDDQR Unmodified 2393.2009 0.20090801 1882 P77173 zipA Cell division protein ZipA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.993 47.642 3 1.6017E-10 23543 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 127.92 125.35 734050000 56356000 58161000 53913000 2005800 1718500 1936300 61654000 60619000 62600000 0 0 0 47106000 55031000 53553000 0 0 0 72323000 73079000 70410000 0 3582800 0 13107 1882 12777 247048;247049;247050;247051;247052;247053;247054;247055;247056;247057;247058;247059;247060;247061;247062;247063 151688;151689;151690;151691 151689 4 LMLQSAQHIADEVGGVVLDDQRR Unmodified 2549.302 0.30201904 1882 P77173 zipA Cell division protein ZipA yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1 2 2 1 1 1 1 1 1 2 2 2 45.079 43.308 3;4 5.0531E-10 17280 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 117.74 110.21 200010000 0 5665600 4315000 11500000 9447600 10944000 0 6709900 6136200 24336000 29204000 19502000 3779500 2756200 3365800 0 0 0 0 5796500 5038900 20183000 14140000 17193000 13108 1882 12778 247064;247065;247066;247067;247068;247069;247070;247071;247072;247073;247074;247075;247076;247077;247078;247079;247080;247081;247082;247083;247084;247085;247086;247087;247088;247089 151692;151693;151694;151695;151696;151697;151698;151699;151700 151696 9 LMNLPAPNPEAPR Unmodified 1418.734 0.73401926 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.595 31.197 2 1.0188E-08 14996 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.18 156.4 2657300000 195060000 188970000 189810000 7528900 6945200 7578100 176410000 163970000 182830000 28120000 28700000 29140000 179510000 181300000 181230000 12856000 6501000 7776000 270020000 257520000 259820000 34878000 32015000 28775000 13109 547 12779 247090;247091;247092;247093;247094;247095;247096;247097;247098;247099;247100;247101;247102;247103;247104;247105;247106;247107;247108;247109;247110;247111;247112;247113 151701;151702;151703;151704;151705;151706;151707;151708;151709;151710;151711;151712;151713;151714;151715;151716;151717;151718;151719;151720;151721;151722;151723;151724 151708 24 LMNLPAPNPEAPR Oxidation (M) 1434.7289 0.72893388 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 1 0 By MS/MS 1 25.443 24.537 2 0.043258 10936 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 42.395 37.979 11551000 0 11551000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13110 547 12779 247114 151725 151725 0 LMNNEEISEEAQHEMAAEAGINPVR Unmodified 2781.2698 0.26979221 752 P0ACV8 ymjA Uncharacterized protein YmjA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.332 38.666 3 9.8028E-31 18909 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 192.45 191.49 280840000 36743000 31136000 30217000 0 0 0 15824000 15994000 19657000 0 0 0 21092000 23077000 20893000 0 0 0 19967000 24778000 21462000 0 0 0 13111 752 12780 247115;247116;247117;247118;247119;247120;247121;247122;247123;247124;247125;247126 151726;151727 151727 2 LMPEFWQFPTVSMGLGPIGAIYQAK Unmodified 2780.407 0.40700138 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 1 2 2 2 2 1 55.81 54.476 2;3;4 1.5348E-30 21888 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 152.88 149.95 14166000000 67676000 275360000 236380000 1568000000 1192400000 1319800000 8801300 0 59500000 137730000 35939000 162170000 172060000 181320000 189990000 0 9417200 14328000 64495000 357890000 343360000 3102600000 3402800000 1263800000 13112 939 12781 247127;247128;247129;247130;247131;247132;247133;247134;247135;247136;247137;247138;247139;247140;247141;247142;247143;247144;247145;247146;247147;247148;247149;247150;247151;247152;247153;247154;247155;247156;247157;247158;247159;247160;247161;247162;247163 151728;151729;151730;151731;151732;151733;151734;151735;151736;151737;151738;151739;151740;151741;151742;151743;151744;151745;151746;151747;151748 151732 19 LMPEFWQFPTVSMGLGPIGAIYQAK Oxidation (M) 2796.4019 0.40191601 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 3 2 2 1 3 2 4 3 4 4 55.552 54.093 2;3 4.3184E-15 19903 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 147.83 144.48 2095400000 0 8874200 0 292690000 229180000 338290000 7979500 11946000 10530000 24518000 16224000 8972900 0 0 2409800 0 0 0 23240000 16567000 26068000 356640000 389790000 331510000 13113 939 12781 247164;247165;247166;247167;247168;247169;247170;247171;247172;247173;247174;247175;247176;247177;247178;247179;247180;247181;247182;247183;247184;247185;247186;247187;247188;247189;247190;247191;247192;247193;247194;247195;247196;247197;247198;247199;247200;247201;247202;247203;247204 151749;151750;151751;151752;151753;151754;151755;151756;151757;151758;151759;151760;151761 151756 438;439 13 LMPEFWQFPTVSMGLGPIGAIYQAK 2 Oxidation (M) 2812.3968 0.39683063 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 2 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 55.14 53.773 3 2.6442E-07 19791 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 108.25 106.09 94522000 0 0 0 15836000 21657000 23626000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9486300 12198000 11718000 13114 939 12781 247205;247206;247207;247208;247209;247210 151762;151763;151764;151765;151766 151765 438;439 5 LMPGEEEVAENPR Unmodified 1469.682 0.68204326 1619 P60390 rsmH Ribosomal RNA small subunit methyltransferase H yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.296 21.93 2 1.0892E-08 9344 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.79 156.06 265320000 25239000 30666000 33599000 0 0 823520 17035000 21310000 20208000 0 1620700 0 17589000 17886000 16111000 1491100 0 711400 21702000 21282000 16408000 1636500 0 0 13115 1619 12782 247211;247212;247213;247214;247215;247216;247217;247218;247219;247220;247221;247222;247223;247224;247225;247226;247227 151767;151768;151769;151770;151771;151772;151773;151774;151775;151776;151777;151778 151769 12 LMPLHNK Unmodified 851.46874 0.46874343 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.788 12.62 2 0.025077 3536 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.021 59.468 831770000 61848000 48270000 46044000 0 0 0 68629000 59713000 65798000 0 0 0 90925000 117350000 100740000 0 0 0 58372000 60320000 53763000 0 0 0 13116 258 12783 247228;247229;247230;247231;247232;247233;247234;247235;247236;247237;247238;247239 151779;151780;151781;151782 151780 4 LMPPLGVLLDR Unmodified 1222.7108 0.71076462 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.223 51.783 2 0.00022226 24410 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.65 101.65 317230000 2650400 2507000 1870500 0 0 0 35525000 33770000 35436000 0 0 0 32412000 33674000 35873000 0 0 0 32606000 33987000 36921000 0 0 0 13117 785 12784 247240;247241;247242;247243;247244;247245;247246;247247;247248;247249;247250;247251 151783;151784;151785;151786;151787;151788;151789;151790;151791 151789 9 LMPSELSGGMAR Unmodified 1247.6002 0.60022789 1663 P63386 mlaF Probable phospholipid import ATP-binding protein MlaF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.496 27.277 2 0.00011272 10258 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 90.906 89.712 175700000 0 6311000 0 954460 1070000 0 0 0 0 7254900 6870800 6718700 19942000 22786000 23533000 2245000 1367200 2072300 0 22878000 36724000 4986100 5113100 4875100 13118 1663 12785 247252;247253;247254;247255;247256;247257;247258;247259;247260;247261;247262;247263;247264;247265;247266;247267;247268 151792;151793;151794;151795 151794 4 LMPSEQWK Unmodified 1017.4954 0.49535211 538 P0A9M5 gpt Xanthine phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.55 22.057 2 0.00089325 8849 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 118.69 104.53 2075200000 176330000 172440000 169570000 0 0 0 132010000 150510000 133240000 0 0 0 157230000 163670000 188400000 0 0 2131000 195920000 203850000 229860000 0 0 0 13119 538 12786 247269;247270;247271;247272;247273;247274;247275;247276;247277;247278;247279;247280;247281 151796;151797;151798;151799;151800;151801;151802;151803;151804 151804 9 LMPSPVK Unmodified 770.43605 0.43604632 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 16.481 17.268 2 0.021786 6041 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 74.439 74.439 83765000 0 0 0 0 0 0 0 50780000 0 0 0 0 0 31731000 0 0 0 0 1253000 0 0 0 0 0 13120 1224 12787 247282;247283;247284;247285;247286;247287;247288;247289;247290 151805;151806;151807;151808;151809;151810;151811 151808 7 LMQMAER Unmodified 877.41499 0.4149933 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 1 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 2 1 15.318 15.876 2 0.0070744 5413 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.822 76.267 1327300000 74651000 58922000 59632000 3605800 3308000 3297700 104610000 120800000 113040000 7030600 8906100 8043400 109260000 106250000 95388000 2823800 2595100 2585100 162570000 134380000 129080000 14216000 0 2286100 13121 651 12788 247291;247292;247293;247294;247295;247296;247297;247298;247299;247300;247301;247302;247303;247304;247305;247306;247307;247308;247309;247310;247311;247312;247313;247314;247315;247316;247317;247318 151812;151813;151814;151815;151816;151817;151818;151819;151820;151821;151822;151823;151824;151825;151826;151827;151828;151829 151824 11 LMQPGSSDINLER Unmodified 1458.7137 0.71367774 872 P0AEM4 flgM Negative regulator of flagellin synthesis yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.071 26.894 2 1.974E-07 12326 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 180.36 172.43 201990000 57401000 55905000 47927000 1151300 971760 1259300 6731000 0 4745500 0 0 0 0 4379500 5445600 0 0 0 6549500 0 9525800 0 0 0 13122 872 12789 247319;247320;247321;247322;247323;247324;247325;247326;247327;247328;247329;247330 151830;151831;151832 151830 3 LMQQYFQCACSVADILR Unmodified 2101.9747 0.97473659 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 52.038 50.919 2;3 9.6007E-32 24799 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 279.12 254.82 715840000 16740000 14293000 13331000 0 0 0 60706000 55576000 57857000 48681000 36166000 42735000 35874000 39941000 19035000 27803000 27738000 23115000 54490000 55533000 54445000 11064000 9889700 10821000 13123 30 12790 247331;247332;247333;247334;247335;247336;247337;247338;247339;247340;247341;247342;247343;247344;247345;247346;247347;247348;247349;247350;247351;247352;247353;247354;247355;247356;247357;247358;247359;247360;247361;247362;247363;247364;247365;247366;247367;247368;247369;247370;247371 151833;151834;151835;151836;151837;151838;151839;151840;151841;151842;151843;151844;151845;151846;151847;151848;151849;151850;151851;151852;151853;151854;151855;151856;151857;151858 151850 26 LMQQYFQCACSVADILRR Unmodified 2258.0758 0.075847615 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 48.199 46.51 3 1.4154E-09 18749 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 114.69 110.07 46598000 0 0 0 0 0 0 9813100 9207600 7427900 4682900 5160000 6263100 2478500 1565300 0 0 0 0 0 0 0 0 0 0 13124 30 12791 247372;247373;247374;247375;247376;247377;247378;247379 151859;151860;151861 151860 3 LMSDLNR Unmodified 847.42219 0.42218717 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.551 16.229 2 0.0022199 4650 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 105.27 60.738 26019000 0 0 0 681270 1107300 1180500 0 0 0 0 8257500 0 0 0 0 0 0 0 10802000 0 0 0 0 3989600 13125 143 12792 247380;247381;247382;247383;247384;247385;247386;247387;247388;247389;247390;247391 151862;151863;151864;151865;151866;151867;151868;151869;151870 151862 9 LMSGEIKGDQDMILLLSK Unmodified 1990.0479 0.047884755 513 P0A9E5 fnr Fumarate and nitrate reduction regulatory protein yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 42.799 42.921 3 0.03395 15320 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 39.523 35.62 23384000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9974200 5860400 7549400 0 0 0 0 0 0 13126 513 12793 247392;247393;247394 151871;151872 151872 2 LMSVGLIAQQLHWVDR Unmodified 1864.9982 0.99817287 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.575 49.17 3 1.4185E-09 23947 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 133.66 128.66 410870000 55072000 57080000 52320000 0 0 0 20453000 22880000 22160000 0 0 0 26855000 25290000 27777000 0 0 0 36246000 32009000 32730000 0 0 0 13127 1272 12794 247395;247396;247397;247398;247399;247400;247401;247402;247403;247404;247405;247406 151873;151874;151875;151876;151877;151878;151879;151880;151881;151882;151883;151884 151877 12 LMSVGLIAQQLHWVDREPFTGTMR Unmodified 2784.4204 0.42036004 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.159 49.907 4 2.5644E-30 24103 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 182.39 181.63 769500000 90948000 92050000 89792000 0 6361500 3066800 35209000 31774000 21884000 0 0 0 65018000 48072000 59724000 0 0 0 73337000 77193000 75067000 0 0 0 13128 1272 12795 247407;247408;247409;247410;247411;247412;247413;247414;247415;247416;247417;247418;247419;247420 151885;151886;151887;151888;151889;151890;151891;151892 151886 7 LMSWGLVDTFR Unmodified 1323.6645 0.66454271 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.848 49.848 2 8.7237E-21 24768 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 203.35 168.54 948710000 74724000 68632000 67105000 0 0 0 0 79013000 0 0 0 0 101950000 94640000 99353000 0 5684300 5116000 116410000 119510000 116560000 0 0 0 13129 197 12796 247421;247422;247423;247424;247425;247426;247427;247428;247429;247430;247431;247432;247433;247434;247435 151893;151894;151895;151896;151897;151898;151899;151900;151901;151902;151903;151904;151905;151906 151895 14 LMTEFNYNSVMQVPR Unmodified 1827.8648 0.86477543 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 45.309 43.817 2;3 5.0758E-46 17856 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 289.22 282.78 2690600000 359140000 309120000 327310000 27302000 26816000 28421000 35868000 29374000 88391000 61986000 64532000 65051000 155460000 154990000 144560000 27623000 19939000 20560000 213400000 214180000 197500000 43250000 38696000 37131000 13130 1644 12797 247436;247437;247438;247439;247440;247441;247442;247443;247444;247445;247446;247447;247448;247449;247450;247451;247452;247453;247454;247455;247456;247457;247458;247459;247460;247461;247462;247463;247464;247465;247466;247467;247468;247469;247470;247471;247472;247473;247474;247475;247476;247477;247478;247479;247480 151907;151908;151909;151910;151911;151912;151913;151914;151915;151916;151917;151918;151919;151920;151921;151922;151923;151924;151925;151926;151927;151928;151929;151930;151931;151932;151933;151934;151935;151936;151937;151938;151939;151940;151941;151942;151943;151944;151945;151946;151947;151948;151949;151950;151951 151912 45 LMTEFNYNSVMQVPR Oxidation (M) 1843.8597 0.85969005 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 42.192 40.537 2 0.0001963 19751 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.342 72.37 28919000 6772400 5286800 4867000 0 0 0 2192000 0 0 0 0 0 0 3310000 0 0 0 0 3038100 0 3452400 0 0 0 13131 1644 12797 247481;247482;247483;247484;247485;247486;247487 151952;151953;151954;151955 151953 584 0 LMTHSKERDWSR Unmodified 1544.7518 0.75179458 2004 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.88 47.469 3 0.14422 23170 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 22.474 10.092 636440000 23942000 46782000 31514000 1056100 0 557380 23618000 20521000 16393000 39345000 40783000 40306000 21937000 23498000 18384000 0 0 0 26700000 28298000 29753000 104160000 98896000 0 + 13132 2004 12798 247488;247489;247490;247491;247492;247493;247494;247495;247496;247497;247498;247499;247500;247501;247502;247503;247504;247505;247506;247507;247508 151956;151957 151956 2 LMTLEQGKPLAEAK Unmodified 1527.8331 0.8330646 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 22.538 21.952 2;3 5.6712E-08 9245 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.86 145.67 2237200000 400830000 426140000 389620000 0 0 0 181740000 202840000 188470000 0 3987700 0 46433000 47545000 37207000 0 0 0 112500000 93942000 105910000 0 0 0 13133 1258 12799 247509;247510;247511;247512;247513;247514;247515;247516;247517;247518;247519;247520;247521;247522;247523;247524;247525;247526;247527;247528;247529;247530;247531;247532;247533 151958;151959;151960;151961;151962;151963;151964;151965;151966;151967 151963 10 LMTLLPQLLER Unmodified 1325.7741 0.77409316 165 P07648 recC RecBCD enzyme subunit RecC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 52.856 51.495 2 0.13222 25037 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 40.386 10.577 25161000 0 0 0 0 0 0 0 0 0 0 0 0 5481900 4385400 3563300 0 0 0 3837200 0 7893600 0 0 0 13134 165 12800 247534;247535;247536;247537;247538 151968 151968 0 LMTNHGGGNFK Unmodified 1174.5553 0.55532661 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 11.504 12.336 2;3 0.0010092 3224 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 72.848 66.846 832810000 67569000 49424000 40799000 0 0 0 69928000 57929000 61432000 0 0 0 72211000 67004000 72988000 0 0 0 106270000 88582000 78668000 0 0 0 13135 1634 12801 247539;247540;247541;247542;247543;247544;247545;247546;247547;247548;247549;247550;247551;247552;247553;247554;247555;247556;247557;247558;247559;247560;247561;247562 151969;151970;151971;151972;151973;151974;151975;151976;151977;151978;151979 151970 11 LMVEQILTDLQK Unmodified 1429.7851 0.78505177 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 2 2 1 52.673 51.363 2;3 2.0315E-06 25368 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 169.37 139.9 437040000 109880000 129500000 96692000 0 0 0 22095000 16132000 16663000 0 0 0 6403900 6866700 6860300 0 0 0 8618500 9359200 7963900 0 0 0 13136 202 12802 247563;247564;247565;247566;247567;247568;247569;247570;247571;247572;247573;247574;247575;247576;247577;247578;247579;247580;247581;247582;247583;247584 151980;151981;151982;151983;151984;151985;151986;151987;151988;151989 151982 10 LMYVMGR Unmodified 868.42992 0.42991509 575 P0AA47 plaP Low-affinity putrescine importer PlaP yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 26.738 25.611 2 0.0019993 11559 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.06 63.803 65652000 0 0 1303400 0 0 0 0 0 0 0 0 0 5080400 0 5490200 0 0 0 14591000 15487000 14947000 2482500 3152100 3117600 13137 575 12803 247585;247586;247587;247588;247589;247590;247591;247592;247593 151990;151991;151992;151993 151992 3 LNAAQAR Unmodified 742.40859 0.40858602 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.567 11.379 2 0.065672 2565 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.258 55.211 545490000 19473000 18741000 98312000 0 0 0 34975000 27942000 27857000 0 0 0 12509000 1262600 95044000 0 0 0 187540000 21834000 0 0 0 0 13138 688 12804 247594;247595;247596;247597;247598;247599;247600;247601;247602;247603;247604 151994 151994 0 LNADDDVSEIFK Unmodified 1364.646 0.64597533 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 39.396 37.674 2 3.5279E-06 17567 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 134.84 128.81 701770000 14197000 0 0 0 0 0 84680000 77674000 82091000 0 0 0 75501000 70580000 66074000 0 0 0 80042000 75236000 75693000 0 0 0 13139 1323 12805 247605;247606;247607;247608;247609;247610;247611;247612;247613;247614 151995;151996;151997;151998;151999 151998 5 LNADTLVIADHNK Unmodified 1422.7467 0.74669243 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 23.095 22.427 2;3 1.0795E-23 9200 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 279.49 262.65 5378400000 450170000 548040000 455440000 2685700 4241900 2805500 364100000 350470000 358490000 6645100 2650900 0 483240000 427360000 441460000 0 0 0 473070000 510910000 496600000 0 0 0 13140 161 12806 247615;247616;247617;247618;247619;247620;247621;247622;247623;247624;247625;247626;247627;247628;247629;247630;247631;247632;247633;247634;247635;247636;247637;247638;247639;247640;247641;247642;247643 152000;152001;152002;152003;152004;152005;152006;152007;152008;152009;152010;152011;152012;152013;152014;152015;152016;152017;152018;152019;152020 152017 21 LNAIESNYVGK Unmodified 1206.6245 0.62445203 1913 P77529 ydjN Uncharacterized symporter YdjN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.136 21.902 2 0.00013265 6793 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 113.62 79.369 516600000 33488000 28424000 30000000 12181000 0 11207000 3923600 0 0 37155000 36574000 28282000 70435000 59595000 0 7389200 4594200 4842600 0 81665000 0 23931000 20156000 22756000 13141 1913 12807 247644;247645;247646;247647;247648;247649;247650;247651;247652;247653;247654;247655;247656;247657;247658;247659;247660;247661 152021;152022;152023;152024;152025;152026;152027;152028;152029;152030;152031;152032;152033;152034;152035 152021 11 LNAKPAR Unmodified 768.46062 0.46062159 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5.0032 5.9135 2 0.0032947 1245 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.68 103.8 201110000 0 0 0 0 0 0 25981000 22023000 24338000 0 0 0 23131000 18946000 19086000 0 0 0 22876000 21926000 22800000 0 0 0 13142 702 12808 247662;247663;247664;247665;247666;247667;247668;247669;247670 152036;152037;152038;152039;152040 152037 5 LNALAER Unmodified 785.43955 0.43955179 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 1 1 1 1 1 1 1 1 1 1 14.726 15.492 2 0.0019731 4742 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.52 48.383 259540000 28450000 0 0 1248000 8240000 2179300 31137000 34274000 0 0 0 0 0 24889000 29158000 0 0 0 42069000 21596000 36304000 0 0 0 13143 1197 12809 247671;247672;247673;247674;247675;247676;247677;247678;247679;247680;247681;247682 152041;152042;152043;152044 152041 3 LNALPDVLEQFIHLR Unmodified 1776.9887 0.98865404 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 3 3 2 2 2 3 2 2 1 1 1 3 3 3 2 2 2 54.934 53.57 2;3 3.5935E-15 21534 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 181.67 177.95 5289800000 153100000 142350000 132920000 55933000 55099000 52811000 382560000 338440000 328940000 151440000 161740000 143160000 435430000 391130000 430070000 59339000 92138000 90442000 438450000 437420000 397250000 125480000 152990000 141140000 13144 643 12810 247683;247684;247685;247686;247687;247688;247689;247690;247691;247692;247693;247694;247695;247696;247697;247698;247699;247700;247701;247702;247703;247704;247705;247706;247707;247708;247709;247710;247711;247712;247713;247714;247715;247716;247717;247718;247719;247720;247721;247722;247723;247724;247725;247726;247727;247728;247729;247730;247731;247732;247733 152045;152046;152047;152048;152049;152050;152051;152052;152053;152054;152055;152056;152057;152058;152059;152060;152061;152062;152063;152064;152065;152066;152067;152068;152069;152070;152071;152072;152073;152074;152075;152076;152077 152049 33 LNAPVDEQGR Unmodified 1097.5465 0.54653606 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.965 14.858 2 3.0321E-09 4512 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 196.95 182.31 5235700000 263080000 274310000 286780000 2300700 0 2825800 621160000 604270000 512770000 0 0 0 493580000 481360000 406420000 0 0 0 501540000 396800000 388540000 0 0 0 13145 539 12811 247734;247735;247736;247737;247738;247739;247740;247741;247742;247743;247744;247745;247746;247747 152078;152079;152080;152081;152082;152083;152084;152085;152086;152087 152086 10 LNAQPHGASLYLPMEGLNCYR Unmodified 2403.1464 0.14637002 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 40.878 39.164 3 1.6952E-15 19117 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 148.19 147.59 851680000 99113000 82222000 98536000 0 0 0 77697000 76562000 64301000 0 0 1042500 45640000 39367000 50789000 0 0 0 73948000 77508000 64954000 0 0 0 13146 91 12812 247748;247749;247750;247751;247752;247753;247754;247755;247756;247757;247758;247759;247760 152088;152089;152090;152091;152092;152093;152094;152095;152096;152097;152098;152099 152091 12 LNAVPTTAYPTPAR Unmodified 1470.7831 0.78307794 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 26.871 25.739 2 4.1808E-09 12013 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 156.51 142.01 1337000000 65089000 77050000 63022000 0 0 0 102300000 103060000 124500000 0 0 0 96324000 91210000 105160000 0 0 0 170550000 174870000 163880000 0 0 0 13147 1497 12813 247761;247762;247763;247764;247765;247766;247767;247768;247769;247770;247771;247772;247773 152100;152101;152102;152103;152104;152105;152106;152107;152108;152109;152110 152100 10 LNDHKPASIGQASR Unmodified 1492.7746 0.77463852 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 10.872 11.688 2;3 8.8589E-09 2895 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.33 133.01 347040000 25599000 23228000 25969000 0 0 0 30720000 26664000 30104000 0 0 0 22097000 19342000 21295000 0 0 0 42481000 43426000 36118000 0 0 0 13148 280 12814 247774;247775;247776;247777;247778;247779;247780;247781;247782;247783;247784;247785;247786 152111;152112;152113;152114;152115;152116;152117;152118 152115 8 LNDLEDALQQAK Unmodified 1356.6885 0.68850885 11 CON__P04264 yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 34.273 32.287 2 1.3548E-11 12751 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 213.31 165.7 205560000 0 0 0 2176900 1557100 2959800 3309800 0 0 54131000 49513000 49258000 0 0 0 0 0 0 0 0 0 18585000 11238000 12829000 + 13149 11 12815 247787;247788;247789;247790;247791;247792;247793;247794;247795;247796;247797 152119;152120;152121;152122;152123;152124;152125;152126 152120 8 LNDLEDALQQAKEDLAR Unmodified 1940.9803 0.98033378 11 CON__P04264 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 47.48 45.752 3 3.657E-12 18060 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 157.03 151.93 59034000 0 0 0 2401700 2126800 1675500 0 0 0 13301000 12179000 13070000 0 0 0 0 0 0 0 0 0 4131500 4971200 5177500 + 13150 11 12816 247798;247799;247800;247801;247802;247803;247804;247805;247806 152127;152128;152129;152130;152131 152130 5 LNDLEEALQQAK Unmodified 1370.7042 0.70415892 17 CON__P35908 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 35.716 33.855 2 0.03241 13015 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 64.103 57.79 19701000 0 0 0 1366500 1198800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4800200 7182000 5153000 + 13151 17 12817 247807;247808;247809;247810;247811 152132 152132 1 LNDMVNWGR Unmodified 1103.5182 0.51821282 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.175 28.993 2 4.1259E-05 13714 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 151.27 144.12 878270000 38564000 39372000 30641000 0 0 0 70035000 74270000 67478000 26881000 0 0 66441000 67225000 61033000 7583300 4840400 5179000 106940000 110590000 101200000 0 0 0 13152 927 12818 247812;247813;247814;247815;247816;247817;247818;247819;247820;247821;247822;247823;247824;247825;247826;247827 152133;152134;152135;152136;152137;152138;152139;152140;152141;152142;152143;152144;152145;152146 152139 9 LNDSNLFR Unmodified 977.49304 0.49304393 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.927 23.768 2 1.4481E-25 10362 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 217.64 194.6 507860000 0 0 174410000 0 485960 620780 89665000 95878000 98906000 0 0 0 0 0 0 0 0 0 47891000 0 0 0 0 0 13153 1258 12819 247828;247829;247830;247831;247832;247833;247834;247835;247836;247837;247838;247839;247840;247841 152147;152148;152149;152150;152151;152152;152153;152154;152155;152156;152157;152158 152154 11 LNDVEYHESIDEMK Unmodified 1720.7614 0.7614158 650 P0ABD3 bfr Bacterioferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 23.231 22.444 2;3 1.6518E-27 9592 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 247.32 230.69 784410000 101890000 112260000 99245000 0 0 0 76476000 71062000 73209000 5358900 4227500 0 37280000 34076000 32848000 0 0 0 45040000 44588000 46860000 0 0 0 13154 650 12820 247842;247843;247844;247845;247846;247847;247848;247849;247850;247851;247852;247853;247854;247855;247856;247857;247858;247859;247860;247861;247862;247863;247864;247865;247866;247867 152159;152160;152161;152162;152163;152164;152165;152166;152167;152168;152169;152170;152171 152165 13 LNEAEQVLDMFGDHFGLNIVHVPAEDR Unmodified 3064.4713 0.47126921 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 2 1 2 2 2 3 2 2 2 1 2 1 1 1 54.549 53.113 3;4 1.9427E-41 26220 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 218.86 212.63 7357800000 737010000 768340000 712510000 0 2408100 0 391050000 397450000 359260000 0 0 0 740670000 688970000 656730000 0 0 0 726170000 529400000 632110000 2962700 8331900 4419500 13155 86 12821 247868;247869;247870;247871;247872;247873;247874;247875;247876;247877;247878;247879;247880;247881;247882;247883;247884;247885;247886;247887;247888;247889;247890;247891;247892;247893;247894;247895;247896 152172;152173;152174;152175;152176;152177;152178;152179;152180;152181;152182;152183;152184;152185;152186;152187;152188;152189;152190 152183 19 LNEALAAQGDNVVINLASDEYFK Unmodified 2493.2387 0.23873331 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 52.988 51.568 2 0.038435 24294 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 49.463 45.159 69406000 0 5578000 3357300 0 0 0 6880500 8453200 6231300 0 0 0 6290200 5807500 4785900 0 0 0 7108000 8622700 6291300 0 0 0 13156 433 12822 247897;247898;247899;247900;247901;247902;247903;247904;247905;247906;247907 152191 152191 0 LNEFPEQFEPLFGLR Unmodified 1834.9254 0.92538508 761 P0AD05 yecA Uncharacterized protein YecA yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 33.105 31.573 3 0.15825 15623 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 14.564 10.785 1521000000 0 0 0 0 0 0 675060000 0 0 0 0 0 0 0 371810000 0 0 0 0 474160000 0 0 0 0 13157 761 12823 247908;247909;247910 152192 152192 1 LNEGLVITQGFIGSENK Unmodified 1817.9523 0.95232811 191 P08660 lysC Lysine-sensitive aspartokinase 3 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 44.489 42.98 2 0.0059191 19995 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 63.181 52.992 23311000 0 0 0 0 0 0 0 6353300 0 0 0 0 3978800 0 3540100 0 0 0 5652600 3786200 0 0 0 0 13158 191 12824 247911;247912;247913;247914;247915 152193 152193 0 LNEIVAIYQK Unmodified 1189.6707 0.67067394 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.134 30.781 2 2.3077E-07 13909 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 177.97 132.89 1151600000 6186600 4080600 5207900 0 0 0 92776000 116930000 108180000 0 17152000 20472000 115890000 103040000 115690000 5329400 5355000 0 135880000 128550000 137340000 12203000 11358000 9991700 13159 723 12825 247916;247917;247918;247919;247920;247921;247922;247923;247924;247925;247926;247927;247928;247929;247930;247931;247932;247933;247934 152194;152195;152196;152197;152198;152199;152200;152201;152202;152203;152204 152203 11 LNELGASSINFVVR Unmodified 1517.8202 0.82019173 1042 P0C0S1 mscS Small-conductance mechanosensitive channel yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.536 40.734 2 1.6546E-06 19157 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 161.67 140.67 1672000000 60289000 56933000 54865000 10834000 1200800 0 178870000 158070000 139990000 30484000 26748000 23124000 138940000 136690000 132540000 4019400 0 0 165410000 165570000 165050000 7311300 9330400 5774600 13160 1042 12826 247935;247936;247937;247938;247939;247940;247941;247942;247943;247944;247945;247946;247947;247948;247949;247950;247951;247952;247953;247954;247955 152205;152206;152207;152208;152209;152210 152210 6 LNELGLQFMQGAR Unmodified 1475.7555 0.75548298 1851 P76329 yedP Putative mannosyl-3-phosphoglycerate phosphatase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 43.444 41.815 2 1.6785E-17 20650 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 213.31 165.7 268120000 67951000 64530000 58440000 3864400 0 0 21658000 23170000 20991000 0 0 0 0 0 0 0 0 0 7520600 0 0 0 0 0 13161 1851 12827 247956;247957;247958;247959;247960;247961;247962;247963;247964 152211;152212;152213;152214 152211 4 LNELGYDCHDETNNPAFR Unmodified 2163.928 0.92798063 98 P04968 ilvA L-threonine dehydratase biosynthetic IlvA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.681 25.559 3 1.9892E-06 11529 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 89.261 89.257 127190000 21236000 21807000 23644000 0 0 0 6358000 6578100 6962700 0 0 0 5805100 5542700 6864400 0 0 0 6675900 6533000 9186900 0 0 0 13162 98 12828 247965;247966;247967;247968;247969;247970;247971;247972;247973;247974;247975;247976 152215;152216 152215 1 LNELLEFPTPFTYK Unmodified 1710.8869 0.88687431 437 P0A8J4 ybeD UPF0250 protein YbeD yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.368 53.003 2 2.5887E-14 19439 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 184.03 178.06 543970000 41338000 45768000 28290000 28658000 26673000 24741000 41663000 40010000 32323000 7172200 10965000 15448000 42003000 0 0 0 12757000 0 57994000 0 53928000 10052000 10361000 13827000 13163 437 12829 247977;247978;247979;247980;247981;247982;247983;247984;247985;247986;247987;247988;247989;247990;247991;247992;247993;247994;247995 152217;152218;152219;152220;152221;152222;152223;152224 152221 8 LNEMGIVLEDGPQGTTWR Unmodified 2014.9782 0.97822529 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 47.218 45.477 3 0.015963 22466 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 34.174 29.735 51107000 0 0 0 0 0 0 12341000 12882000 9400600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16484000 13164 1188 12830 247996;247997;247998;247999 152225;152226;152227 152227 0 LNETWGK Unmodified 846.42357 0.42356738 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS 1 1 15.295 16.298 2 0.017277 5266 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 76.847 56.925 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13165 660 12831 248000;248001 152228;152229 152229 2 LNEVAHK Unmodified 809.43955 0.43955179 1710 P67095 yfcE Phosphodiesterase YfcE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 5.8296 6.669 2 0.0059588 1651 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 97.473 20.099 304320000 54839000 56202000 52430000 0 0 0 20156000 0 22982000 0 0 0 21599000 18381000 21467000 0 0 0 15108000 12065000 9085400 0 0 0 13166 1710 12832 248002;248003;248004;248005;248006;248007;248008;248009;248010;248011;248012 152230;152231;152232;152233;152234;152235;152236;152237;152238 152234 9 LNEVDLVLHSLEQITVTK Unmodified 2050.131 0.13102076 1922 P77625 yfbT Sugar phosphatase YfbT yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.982 53.509 3 2.5409E-10 26577 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 112.55 108.95 422860000 44224000 41681000 28436000 0 0 0 43290000 42761000 37863000 0 0 0 31840000 25335000 31953000 0 0 0 33073000 27753000 34650000 0 0 0 13167 1922 12833 248013;248014;248015;248016;248017;248018;248019;248020;248021;248022;248023;248024 152239;152240;152241;152242;152243;152244;152245 152239 7 LNEVEFR Unmodified 905.46068 0.46068117 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.843 21.138 2 4.1729E-06 8217 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 195.98 102.39 2904900000 279210000 239840000 226060000 0 0 2550500 228020000 206540000 198330000 0 676360 0 266070000 226790000 206450000 0 0 0 248400000 295470000 280500000 0 0 0 13168 161 12834 248025;248026;248027;248028;248029;248030;248031;248032;248033;248034;248035;248036;248037;248038;248039 152246;152247;152248;152249;152250;152251;152252;152253;152254;152255;152256;152257;152258 152254 13 LNEVIELLQPAWQK Unmodified 1679.9247 0.9246568 798 P0ADP9 yihD Protein YihD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 52.723 51.424 2;3 5.7977E-11 25177 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.22 168.22 1675400000 257270000 260790000 224150000 1976200 1582000 3825700 127780000 119520000 107380000 0 0 0 102790000 98385000 103750000 0 0 0 85710000 87621000 92827000 0 0 0 13169 798 12835 248040;248041;248042;248043;248044;248045;248046;248047;248048;248049;248050;248051;248052;248053;248054;248055;248056;248057;248058;248059;248060;248061;248062;248063;248064;248065;248066;248067 152259;152260;152261;152262;152263;152264;152265;152266;152267;152268;152269;152270;152271;152272 152265 8 LNFAEIATYNDHR Unmodified 1562.7478 0.74775506 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.778 32.339 3 0.0049539 15745 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 59.607 57.774 493380000 64824000 49619000 50472000 0 0 0 32315000 32134000 31502000 0 0 0 35649000 30105000 26554000 0 0 0 46127000 43899000 50179000 0 0 0 13170 232 12836 248068;248069;248070;248071;248072;248073;248074;248075;248076;248077;248078;248079 152273 152273 1 LNFDQFK Unmodified 910.45487 0.45486751 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.082 29.584 2 0.0031978 13679 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 108.98 100.3 662990000 68025000 58130000 46938000 1927400 1809900 2109900 56469000 57992000 53934000 0 0 1428200 41392000 43527000 44484000 0 0 0 56696000 54792000 63570000 2677800 3585300 3498400 13171 1649 12837 248080;248081;248082;248083;248084;248085;248086;248087;248088;248089;248090;248091;248092;248093;248094;248095;248096;248097;248098 152274;152275;152276;152277;152278;152279;152280;152281;152282;152283;152284;152285;152286;152287;152288;152289;152290 152287 17 LNFQIVYPNDRDDLLK Unmodified 1962.0211 0.021076378 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 1 1 1 1 1 43.902 42.189 2;3 1.1219E-30 20874 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 240.12 221.5 583670000 0 0 0 0 0 1093300 132000000 122550000 128910000 2752100 0 3534700 71247000 56845000 61717000 0 3032900 0 0 0 0 0 0 0 13172 520 12838 248099;248100;248101;248102;248103;248104;248105;248106;248107;248108;248109;248110;248111 152291;152292;152293;152294;152295;152296 152293 6 LNFSHGDYAEHGQR Unmodified 1629.7284 0.72841661 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 3 3 3 1 2 2 3 3 3 3 2 3 1 13.02 13.774 2;3;4 8.4927E-56 4081 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 296.28 284.41 12195000000 841210000 767310000 656790000 3828100 0 0 620140000 1529300000 1550500000 2607900 4822300 4773800 1275700000 1092600000 932970000 0 0 0 1184400000 718180000 1009000000 1025300 0 0 13173 771 12839 248112;248113;248114;248115;248116;248117;248118;248119;248120;248121;248122;248123;248124;248125;248126;248127;248128;248129;248130;248131;248132;248133;248134;248135;248136;248137;248138;248139;248140;248141;248142;248143;248144;248145;248146;248147;248148;248149;248150;248151;248152;248153 152297;152298;152299;152300;152301;152302;152303;152304;152305;152306;152307;152308;152309;152310;152311;152312;152313;152314;152315;152316;152317;152318;152319;152320;152321;152322;152323;152324;152325;152326;152327;152328;152329;152330 152300 34 LNGDVAATER Unmodified 1044.52 0.51998696 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 13.027 13.321 2 0.00063698 3145 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 90.108 70.631 24728000 0 0 0 0 0 0 0 0 0 0 0 1489800 0 0 0 0 0 0 0 0 0 7790100 7556200 7891400 13174 1435 12840 248154;248155;248156;248157 152331 152331 1 LNGEDLK Unmodified 787.40758 0.40758296 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS 1 1 12.553 13.275 2 0.030016 3868 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 67.032 1.7799 148720000 0 77340000 71376000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13175 94 12841 248158;248159 152332;152333 152332 2 LNGPLPADTLFQPK Unmodified 1509.8191 0.81912909 1158 P19624 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.774 41.121 2 0.0096084 20179 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.179 63.238 96260000 12128000 15201000 11770000 0 0 0 3464500 5115000 3190600 0 0 0 5062200 6658200 5979900 0 0 0 9217100 8926500 9546400 0 0 0 13176 1158 12842 248160;248161;248162;248163;248164;248165;248166;248167;248168;248169;248170;248171 152334;152335;152336 152334 3 LNHLVDDK Unmodified 952.49779 0.49779495 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 1 2 1 1 2 2 1 1 1 3 2 2 1 1 1 2 2 2 12.049 12.609 2 4.6494E-07 2669 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 199.8 165.1 29106000000 247900000 186540000 192350000 13372000 14245000 18639000 163330000 171700000 181400000 1153500000 1991200000 1031100000 166470000 184650000 152630000 5911100000 3354100000 4171000000 230730000 233900000 219800000 3703600000 2234100000 3178600000 13177 463 12843 248172;248173;248174;248175;248176;248177;248178;248179;248180;248181;248182;248183;248184;248185;248186;248187;248188;248189;248190;248191;248192;248193;248194;248195;248196;248197;248198;248199;248200;248201;248202;248203;248204;248205;248206;248207;248208;248209;248210;248211;248212 152337;152338;152339;152340;152341;152342;152343;152344;152345;152346;152347;152348 152337 12 LNHLVDDKMHAR Oxidation (M) 1463.7303 0.73033086 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 2 2 3 3 3 11.325 11.45 2;3;4 1.3167E-06 2138 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 107.83 86.743 457580000 0 0 0 0 0 0 0 0 0 35390000 32266000 27883000 0 0 0 75714000 97032000 119190000 0 0 0 28825000 14824000 26461000 13178 463 12844 248213;248214;248215;248216;248217;248218;248219;248220;248221;248222;248223;248224;248225;248226;248227;248228;248229;248230;248231;248232;248233;248234;248235;248236 152349;152350;152351;152352;152353;152354;152355;152356;152357;152358;152359;152360;152361;152362;152363;152364;152365 152363 268 17 LNHLVDDKMHAR Unmodified 1447.7354 0.73541624 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 3 3 3 3 3 3 3 3 12.124 12.387 2;3;4 5.143E-31 2805 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 267.24 253.03 7320000000 0 0 0 3710900 4478500 3487400 0 0 0 673360000 587010000 526150000 0 0 0 1436600000 548740000 550050000 0 0 0 1038400000 937200000 1010800000 13179 463 12844 248237;248238;248239;248240;248241;248242;248243;248244;248245;248246;248247;248248;248249;248250;248251;248252;248253;248254;248255;248256;248257;248258;248259;248260;248261;248262;248263;248264;248265;248266;248267 152366;152367;152368;152369;152370;152371;152372;152373;152374;152375;152376;152377;152378;152379;152380;152381;152382;152383;152384;152385;152386;152387;152388;152389;152390;152391 152382 26 LNHSATHLMHAALR Unmodified 1570.8151 0.81506354 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 1 1 1 1 3 3 3 1 1 1 3 3 3 3 3 3 1 1 1 13.063 13.834 2;3;4 3.0467E-35 4354 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 313.36 309.69 2817700000 198290000 109930000 105430000 0 1813200 2494600 259440000 284870000 282220000 3780600 4430500 6218600 186580000 184120000 176190000 0 0 0 393660000 374780000 229960000 5084800 5717800 2653300 13180 59 12845 248268;248269;248270;248271;248272;248273;248274;248275;248276;248277;248278;248279;248280;248281;248282;248283;248284;248285;248286;248287;248288;248289;248290;248291;248292;248293;248294;248295;248296;248297;248298;248299;248300;248301;248302;248303;248304;248305;248306;248307 152392;152393;152394;152395;152396;152397;152398;152399;152400;152401;152402;152403;152404;152405;152406;152407;152408 152399 17 LNHTVTADQLQAFDETILASGIVPR Unmodified 2708.4133 0.41334363 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 53.359 51.926 3 7.769E-23 25668 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 177.38 176.4 112500000 32696000 30220000 33836000 0 0 0 4279900 0 0 0 0 0 0 2788900 0 0 0 0 3933300 4746900 0 0 0 0 13181 1554 12846 248308;248309;248310;248311;248312;248313;248314 152409;152410;152411 152409 3 LNIDQNPGTAPK Unmodified 1266.6568 0.65681479 571 P0AA25 trxA Thioredoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.949 18.385 2 9.8114E-17 6615 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206.49 197.96 14107000000 1166600000 1110100000 980110000 13822000 18018000 17754000 1426700000 1354900000 1305000000 18323000 15871000 15878000 992250000 1014200000 933950000 8756100 4154900 4715300 1275200000 1245100000 1150800000 12177000 9995400 12225000 13182 571 12847 248315;248316;248317;248318;248319;248320;248321;248322;248323;248324;248325;248326;248327;248328;248329;248330;248331;248332;248333;248334;248335;248336;248337;248338;248339 152412;152413;152414;152415;152416;152417;152418;152419;152420;152421;152422;152423;152424;152425;152426;152427;152428;152429;152430;152431;152432;152433;152434;152435 152432 24 LNIGEDVEEMLR Unmodified 1416.6919 0.69187967 650 P0ABD3 bfr Bacterioferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.233 48.806 2 2.272E-05 19854 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 145.25 130.57 898770000 123550000 115940000 101670000 653670 1052000 642980 97698000 88466000 76679000 9971900 9666600 10557000 40856000 39266000 41045000 0 0 0 46518000 46256000 48276000 0 0 0 13183 650 12848 248340;248341;248342;248343;248344;248345;248346;248347;248348;248349;248350;248351;248352;248353;248354;248355;248356;248357 152436;152437;152438;152439;152440;152441;152442;152443;152444;152445;152446 152436 11 LNIKPGQTTFDGR Unmodified 1445.7627 0.76267685 928 P0AFD1 nuoE NADH-quinone oxidoreductase subunit E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 2 20.938 21.121 2;3 7.9856E-07 7958 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 147.37 137.41 1352700000 57644000 60710000 61800000 7233900 11533000 9479900 99322000 89644000 93746000 13597000 19228000 13314000 129030000 99692000 99943000 0 0 0 145890000 156620000 150100000 13100000 9938700 11180000 13184 928 12849 248358;248359;248360;248361;248362;248363;248364;248365;248366;248367;248368;248369;248370;248371;248372;248373;248374;248375;248376;248377;248378;248379;248380;248381;248382;248383;248384;248385;248386;248387;248388;248389;248390;248391;248392;248393;248394;248395 152447;152448;152449;152450;152451;152452;152453;152454;152455;152456;152457;152458;152459;152460;152461;152462;152463;152464;152465;152466;152467;152468;152469 152467 23 LNIPMLSAAMDTVTEAR Unmodified 1831.9172 0.91720493 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 2 2 3 2 54.547 53.099 2;3 4.4418E-11 25138 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 150.28 148.21 1342200000 0 0 0 0 0 0 41814000 29523000 31953000 0 0 6294900 307490000 66232000 71152000 0 0 0 293520000 255860000 238350000 0 0 0 13185 788 12850 248396;248397;248398;248399;248400;248401;248402;248403;248404;248405;248406;248407;248408;248409;248410;248411;248412 152470;152471;152472;152473;152474;152475;152476;152477;152478 152477 9 LNIPVIFVSGGPMEAGK Unmodified 1727.928 0.92802762 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 52.976 51.573 2 1.1434E-10 25168 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.02 141.41 152990000 33602000 33296000 26423000 0 0 0 0 0 6805500 0 0 0 7456400 7297000 8491700 0 0 0 10837000 9835200 8951100 0 0 0 13186 118 12851 248413;248414;248415;248416;248417;248418;248419;248420;248421;248422 152479;152480;152481;152482;152483;152484 152484 6 LNITLLSR Unmodified 928.57057 0.57056597 1881 P77148 ydhS Uncharacterized protein YdhS yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 36.116 34.549 2 2.7135E-06 16426 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 183.74 125.14 107700000 25539000 24454000 21224000 0 0 0 9787400 8727500 6481600 0 0 0 2876000 0 2069600 0 0 0 0 2905900 3636800 0 0 0 13187 1881 12852 248423;248424;248425;248426;248427;248428;248429;248430;248431;248432 152485;152486;152487;152488 152488 1 LNKEPIIEYLNSNIVLLK Unmodified 2112.2194 0.21944183 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 2 2 2 51.023 49.898 2;3 5.2815E-24 24309 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 244.57 227.37 5096500000 906150000 703530000 768580000 3877700 6843800 5672300 184030000 200690000 181410000 0 0 0 254130000 245230000 260070000 5186600 5536200 8793200 478610000 455300000 422900000 0 0 0 13188 1444 12853 248433;248434;248435;248436;248437;248438;248439;248440;248441;248442;248443;248444;248445;248446;248447;248448;248449;248450;248451;248452;248453;248454;248455;248456;248457;248458;248459;248460;248461;248462 152489;152490;152491;152492;152493;152494;152495;152496;152497;152498;152499;152500;152501;152502;152503;152504;152505;152506;152507;152508;152509;152510;152511;152512;152513;152514;152515;152516 152497 28 LNKPDLQVK Unmodified 1053.6182 0.61824444 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 14.205 15.011 2;3 0.00011226 4894 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.16 131.58 671850000 175530000 161620000 151680000 325050 0 0 22169000 34122000 22401000 0 0 0 6144500 17237000 15526000 0 0 0 19983000 22395000 22717000 0 0 0 13189 1501 12854 248463;248464;248465;248466;248467;248468;248469;248470;248471;248472;248473;248474;248475;248476;248477;248478;248479;248480;248481;248482;248483;248484;248485;248486 152517;152518;152519;152520;152521;152522 152520 6 LNLEGLEHIAAFMQR Unmodified 1740.8981 0.89812447 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 51.724 50.426 2;3 4.2088E-37 24608 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 270.93 244.89 1607000000 229360000 270540000 235440000 1045200 1102100 1082100 123370000 130650000 131640000 1478300 2002700 1614100 92699000 75254000 70031000 0 0 0 62974000 67289000 70899000 12189000 13383000 12957000 13190 510 12855 248487;248488;248489;248490;248491;248492;248493;248494;248495;248496;248497;248498;248499;248500;248501;248502;248503;248504;248505;248506;248507;248508;248509;248510;248511;248512;248513;248514;248515;248516;248517;248518;248519;248520;248521;248522 152523;152524;152525;152526;152527;152528;152529;152530;152531;152532;152533;152534;152535;152536;152537;152538;152539;152540;152541;152542 152536 20 LNLIPSMASIQTTLVNNEVSKPLFDMAK Unmodified 3073.6192 0.619179 1944 P77804 ydgA Protein YdgA yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.661 53.206 3 1.8677E-07 26389 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.721 92.497 239940000 0 0 8757400 2069800 0 0 18534000 27533000 21507000 35574000 38919000 0 18964000 11126000 11830000 0 0 0 20773000 16401000 0 0 0 7952100 13191 1944 12856 248523;248524;248525;248526;248527;248528;248529;248530;248531;248532;248533;248534;248535 152543 152543 1 LNLLADDSLADR Unmodified 1314.6779 0.67794416 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.538 36.703 2 0.0015186 17697 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 82.261 71.737 196620000 17929000 15094000 13795000 0 0 0 0 23180000 0 952360 981230 1378600 16011000 15071000 15836000 0 0 0 27397000 22735000 25453000 804760 0 0 13192 1197 12857 248536;248537;248538;248539;248540;248541;248542;248543;248544;248545;248546;248547;248548;248549 152544;152545;152546;152547;152548;152549;152550;152551 152549 7 LNLLADDSLADRVDEIR Unmodified 1927.0011 0.0010692176 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.241 41.734 3 5.1448E-14 20743 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.22 130.69 511610000 35417000 32891000 25259000 2272000 2462000 1730300 31608000 28051000 29991000 11831000 11840000 11118000 33890000 25485000 34109000 5423900 6181400 7035900 50628000 48040000 51006000 7029000 8918600 9392300 13193 1197 12858 248550;248551;248552;248553;248554;248555;248556;248557;248558;248559;248560;248561;248562;248563;248564;248565;248566;248567;248568;248569;248570;248571;248572;248573 152552;152553;152554;152555;152556;152557;152558;152559;152560;152561;152562;152563;152564 152555 12 LNLLADDSLADRVDEIRER Unmodified 2212.1448 0.14477334 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 38.594 37.623 4 0.11499 12978 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 31.111 22.511 13872000 0 0 0 0 0 0 0 0 0 0 0 2205800 0 0 0 2096500 1443400 2105400 0 0 0 0 3539500 2481900 13194 1197 12859 248574;248575;248576;248577;248578;248579 152565 152565 0 LNLLVTDK Unmodified 914.54368 0.54368251 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 29.772 28.407 2 0.00029228 13308 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 147.52 86.759 1224600000 0 65626000 72311000 0 0 0 144770000 140530000 120630000 0 0 0 85232000 84475000 101580000 0 0 0 134440000 133570000 141400000 0 0 0 13195 63 12860 248580;248581;248582;248583;248584;248585;248586;248587;248588;248589;248590 152566;152567;152568;152569;152570;152571;152572;152573;152574;152575 152568 10 LNLQVEDETR Unmodified 1215.6095 0.60953025 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 2 2 2 1 1 2 1 2 1 1 24.32 23.421 2;3 1.8734E-05 7495 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 172.23 166.03 110130000 4766000 7540700 5067700 1450400 1346600 1225100 2639400 0 3432400 5084000 3595300 3213600 0 2192000 2150000 24257000 17533000 17536000 3732500 3367600 0 0 0 0 13196 456 12861 248591;248592;248593;248594;248595;248596;248597;248598;248599;248600;248601;248602;248603;248604;248605;248606;248607;248608;248609;248610;248611;248612;248613 152576;152577;152578;152579 152576 3 LNLVQSIITR Unmodified 1155.6976 0.69755739 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 40.81 38.923 2 1.5871E-06 16434 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 163.32 149.74 694210000 3999700 6192400 6407100 57733000 57198000 51756000 94505000 99398000 104360000 15158000 19877000 21432000 12227000 11533000 13126000 0 0 0 6754400 5244500 4296500 32104000 36914000 33986000 13197 722 12862 248614;248615;248616;248617;248618;248619;248620;248621;248622;248623;248624;248625;248626;248627;248628;248629;248630;248631;248632;248633;248634;248635;248636;248637;248638;248639;248640;248641;248642;248643;248644;248645;248646;248647 152580;152581;152582;152583;152584;152585;152586;152587;152588;152589;152590;152591;152592;152593;152594 152582 15 LNLVYIYGESLER Unmodified 1567.8246 0.8246084 1536 P39401 mdoB Phosphoglycerol transferase I yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 49.29 47.865 2 4.6797E-05 22450 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 96.015 88.635 60342000 0 0 0 0 0 0 0 7673800 0 3426800 0 2722600 7677200 0 0 0 0 0 10800000 9850900 11608000 2616900 1735600 2230000 13198 1536 12863 248648;248649;248650;248651;248652;248653;248654;248655;248656;248657 152595 152595 1 LNMMNAEHR Unmodified 1114.5012 0.50118255 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 13.064 13.935 2;3 0.00014799 4224 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 137.9 137.9 413160000 45323000 46249000 49665000 639640 0 0 29019000 27906000 29600000 0 0 0 26573000 32667000 25261000 0 0 0 32986000 34908000 32367000 0 0 0 13199 451 12864 248658;248659;248660;248661;248662;248663;248664;248665;248666;248667;248668;248669;248670;248671;248672;248673;248674;248675;248676;248677;248678;248679;248680;248681;248682 152596;152597;152598;152599;152600;152601;152602;152603;152604;152605;152606;152607 152601 11 LNNALAAIK Unmodified 926.55492 0.5549159 1350 P30860 artJ ABC transporter arginine-binding protein 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 22.419 22.112 1;2 0.00064019 9394 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.04 24.746 143140000 38116000 36922000 37235000 0 0 0 0 0 0 0 0 0 10022000 10682000 10164000 0 0 0 0 0 0 0 0 0 13200 1350 12865 248683;248684;248685;248686;248687;248688;248689 152608;152609;152610;152611;152612;152613 152608 5 LNNALSAMSSVSK Unmodified 1320.6708 0.6707503 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 27.342 26.057 2 7.2175E-06 11347 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 124.42 117.27 837030000 0 0 0 0 0 0 63898000 66393000 58685000 0 0 1167100 83674000 75551000 71685000 0 0 0 127130000 144610000 144240000 0 0 0 13201 1124 12866 248690;248691;248692;248693;248694;248695;248696;248697;248698;248699 152614;152615 152614 2 LNNAPADSWR Unmodified 1142.5469 0.54687041 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.492 18.986 2 9.9864E-10 7130 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 201.07 201.07 232520000 0 0 0 513960 494990 494250 27910000 30796000 25111000 0 1129200 948930 24265000 18273000 17001000 0 0 0 28392000 28931000 26612000 0 0 1647300 13202 1586 12867 248700;248701;248702;248703;248704;248705;248706;248707;248708;248709;248710;248711;248712;248713;248714 152616;152617;152618;152619;152620;152621;152622 152617 7 LNNEVLHEVQAS Unmodified 1351.6732 0.67319314 913 P0AF54 yjcH Inner membrane protein YjcH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 25.067 24.139 2 9.9738E-13 10618 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 201.56 190.73 173350000 50114000 56709000 47833000 5960500 5684100 7045600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13203 913 12868 248715;248716;248717;248718;248719;248720 152623;152624;152625;152626;152627;152628 152627 6 LNNQGHSIGIALGACTVPAAGK Unmodified 2148.111 0.11097079 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.281 28.007 3 1.041E-06 12479 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.776 93.424 240720000 0 7306200 8112300 0 0 0 38263000 31175000 34749000 0 0 0 23530000 23667000 24838000 0 0 0 17499000 13545000 18034000 0 0 0 13204 1806 12869 248721;248722;248723;248724;248725;248726;248727;248728;248729;248730;248731 152629;152630;152631;152632;152633;152634 152632 6 LNPGDLLVFNNTR Unmodified 1471.7783 0.77832691 341 P0A7F9 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.966 46.551 2 3.7578E-07 22695 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 149.33 124.48 163800000 14832000 12268000 12281000 0 0 0 9553000 9050600 8982300 0 0 0 8940500 11659000 8986300 0 0 0 21219000 21093000 24937000 0 0 0 13205 341 12870 248732;248733;248734;248735;248736;248737;248738;248739;248740;248741;248742;248743 152635;152636;152637;152638;152639;152640;152641;152642;152643;152644 152638 10 LNPGLKLPSQNIAVVR Unmodified 1718.0203 0.020288517 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.099 31.76 3 5.1412E-05 14570 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 82.651 82.616 287910000 0 0 0 1939900 1777500 1802900 35425000 24466000 27734000 0 0 0 26880000 27186000 20827000 2210100 1758800 1636200 35026000 29758000 36755000 4759200 4510700 3457200 13206 994 12871 248744;248745;248746;248747;248748;248749;248750;248751;248752;248753;248754;248755;248756;248757;248758;248759;248760;248761 152645;152646;152647;152648;152649;152650;152651;152652 152650 7 LNPLALR Unmodified 795.49667 0.49667274 1645 P62517 mdoH Glucans biosynthesis glucosyltransferase H yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.96 27.444 2 0.0052872 10451 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 100.27 22.329 155890000 6714200 0 8648300 2363300 2169500 2017700 13433000 11137000 12393000 5141800 5982000 4580800 10253000 7321600 8268100 0 0 0 14993000 14849000 14690000 4238300 3336100 3359700 13207 1645 12872 248762;248763;248764;248765;248766;248767;248768;248769;248770;248771;248772;248773;248774;248775;248776;248777;248778;248779;248780;248781 152653;152654;152655;152656;152657 152654 5 LNPQIDMGQR Unmodified 1170.5815 0.58154136 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 22.513 21.949 2 0.00025448 7271 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 116.25 91.431 38452000 0 0 0 1966700 0 0 0 0 0 7864400 7784100 5542300 0 0 0 2088500 1630400 1518300 0 0 0 5979700 4077400 0 13208 1197 12873 248782;248783;248784;248785;248786;248787;248788;248789;248790 152658;152659;152660 152660 3 LNPSEIR Unmodified 827.45012 0.45011648 1578 P45748 tsaC Threonylcarbamoyl-AMP synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 15.011 15.869 2 0.00084363 5331 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.37 84.763 199110000 13001000 11009000 13017000 0 0 0 0 0 0 0 0 0 22797000 16270000 21438000 0 0 0 36410000 30988000 34178000 0 0 0 13209 1578 12874 248791;248792;248793;248794;248795;248796;248797;248798;248799 152661;152662;152663;152664;152665;152666;152667;152668 152665 8 LNPTHPNIDYVMYMR Unmodified 1862.8808 0.88075985 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 37.689 35.389 3 2.5994E-06 14314 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 102.28 100.54 34299000 0 0 0 0 0 0 0 0 0 8261300 6926800 6962200 0 0 0 0 0 0 0 0 0 4190000 4170200 3788300 13210 690 12875 248800;248801;248802;248803;248804;248805 152669 152669 1 LNQLHER Unmodified 908.48281 0.48281359 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 10.426 11.252 2 0.13009 2650 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 58.917 54.601 229640000 21970000 19251000 14777000 0 0 0 0 19799000 18171000 0 0 0 22596000 19602000 17810000 0 0 0 25475000 26467000 23718000 0 0 0 13211 1794 12876 248806;248807;248808;248809;248810;248811;248812;248813;248814;248815;248816 152670;152671 152670 0 LNQLHERWQEEKAGH Unmodified 1873.9183 0.91834264 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 2 By matching By matching By MS/MS By matching 1 1 1 1 39.554 37.937 4 0.16464 17740 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 10.634 6.6663 64245000 0 0 8185700 0 0 0 0 0 16411000 0 0 0 18975000 20673000 0 0 0 0 0 0 0 0 0 0 13212 1794 12877 248817;248818;248819;248820 152672 152672 1 LNQLSNQVDNLR Unmodified 1412.7372 0.73719038 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.375 23.341 2 1.115E-11 10189 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 214.58 197.15 432440000 18959000 14485000 11863000 5552800 6548300 5635100 43080000 39999000 37747000 12839000 14174000 13231000 21771000 22379000 22801000 0 0 0 40035000 42692000 35168000 7189100 8831100 7456800 13213 201 12878 248821;248822;248823;248824;248825;248826;248827;248828;248829;248830;248831;248832;248833;248834;248835;248836;248837;248838;248839;248840;248841 152673;152674;152675;152676;152677;152678;152679;152680;152681;152682;152683;152684;152685;152686;152687;152688;152689;152690;152691 152683 19 LNQQNPQPK Unmodified 1065.5567 0.55670682 102 P04994 xseA Exodeoxyribonuclease 7 large subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.242 20.635 2 0.14741 8158 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 38.322 23.546 369560000 25744000 27348000 26991000 0 0 0 48272000 36222000 41738000 0 0 0 26854000 25011000 20139000 0 0 0 29411000 31907000 29919000 0 0 0 13214 102 12879 248842;248843;248844;248845;248846;248847;248848;248849;248850;248851;248852;248853 152692;152693;152694 152692 3 LNQVEQSNQQR Unmodified 1342.6589 0.65894006 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 10.762 11.633 2 2.5842E-07 2187 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 161.79 150.96 26514000 4973100 4471200 4496900 0 6946300 5626500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13215 152 12880 248854;248855;248856;248857;248858 152695 152695 1 LNQYDVFVR Unmodified 1152.5928 0.59275797 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.825 31.385 2 2.502E-11 14775 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 213.35 203.77 316230000 4258100 3450600 4164400 0 0 0 33239000 32659000 31877000 0 0 0 33600000 35051000 33647000 0 0 0 34973000 34445000 34861000 0 0 0 13216 1424 12881 248859;248860;248861;248862;248863;248864;248865;248866;248867;248868;248869;248870 152696;152697;152698;152699;152700;152701;152702;152703 152701 8 LNSAAISDYAPNGLQVEGK Unmodified 1945.9745 0.97452012 959 P0AFP6 ybgI Putative GTP cyclohydrolase 1 type 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 36.138 34.57 2;3 1.0474E-35 16850 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 209.39 200.88 427660000 88243000 81642000 65405000 2412700 2064900 2687700 28961000 28489000 0 1888100 0 0 16462000 22745000 22664000 0 0 0 19534000 24415000 20051000 0 0 0 13217 959 12882 248871;248872;248873;248874;248875;248876;248877;248878;248879;248880;248881;248882;248883;248884;248885;248886;248887;248888;248889;248890;248891;248892;248893;248894 152704;152705;152706;152707;152708;152709;152710;152711;152712;152713;152714;152715;152716 152706 13 LNSAFKPSGDQPEAIR Unmodified 1728.8795 0.87949752 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 2 1 2 1 1 2 1 2 19.864 20.358 2;3 2.9731E-10 7778 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 152.4 144.29 318800000 40088000 40340000 39966000 697410 0 0 31457000 33218000 23242000 0 0 0 17978000 13530000 14270000 0 0 0 22807000 17811000 23392000 0 0 0 13218 426 12883 248895;248896;248897;248898;248899;248900;248901;248902;248903;248904;248905;248906;248907;248908;248909;248910;248911;248912;248913;248914 152717;152718;152719;152720;152721;152722;152723 152723 5 LNSAVFPGGQGGPLMHVIAGK Unmodified 2049.083 0.082965129 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 42.921 41.322 2;3 7.8011E-22 19989 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 174.72 162.36 5154800000 893890000 820170000 789780000 2236500 2404900 2062000 363540000 344080000 317980000 0 0 0 226320000 223480000 219040000 0 0 0 314730000 314230000 320860000 0 0 0 13219 391 12884 248915;248916;248917;248918;248919;248920;248921;248922;248923;248924;248925;248926;248927;248928;248929;248930;248931;248932;248933;248934;248935;248936;248937;248938;248939;248940 152724;152725;152726;152727;152728;152729;152730;152731;152732;152733;152734;152735;152736;152737;152738;152739;152740;152741;152742 152732 19 LNSCAVAAQVYIGSEYEHQSIK Unmodified 2466.1849 0.1849236 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.668 33.215 3 6.6018E-07 15666 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.02 100.34 299360000 101020000 81499000 84541000 0 0 0 4898000 4463600 4074500 0 0 0 3260000 3530200 2928100 0 0 0 5025300 0 4127000 0 0 0 13220 1822 12885 248941;248942;248943;248944;248945;248946;248947;248948;248949;248950;248951 152743;152744;152745 152745 3 LNSEYYNFNLEKPPFNDVR Unmodified 2358.1281 0.12806065 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 41.342 39.608 3 5.6882E-10 19623 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.26 117.82 133550000 0 0 0 1482400 0 2425700 15848000 3553700 18865000 0 0 0 14796000 15461000 15717000 0 0 0 13134000 16731000 15536000 0 0 0 13221 1961 12886 248952;248953;248954;248955;248956;248957;248958;248959;248960;248961;248962 152746;152747;152748;152749;152750;152751;152752 152746 7 LNSLEDVR Unmodified 944.49271 0.49270958 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 1 2 17.69 18.303 2 1.2422E-06 7251 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 194.25 104.88 2134500000 498060000 438060000 398250000 0 0 0 211930000 181130000 213960000 0 0 346450 47294000 43220000 12355000 0 0 0 89898000 0 0 0 0 0 13222 1174 12887 248963;248964;248965;248966;248967;248968;248969;248970;248971;248972;248973;248974;248975;248976;248977;248978;248979;248980;248981;248982 152753;152754;152755;152756;152757;152758;152759;152760;152761;152762;152763 152754 11 LNSLEDVRK Unmodified 1072.5877 0.58767259 1174 P21179 katE Catalase HPII yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 13.031 13.856 2 0.00026131 4247 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146.27 108.11 124530000 27172000 26255000 24291000 0 0 0 13290000 12326000 11973000 0 0 0 2430100 2241700 0 0 0 0 4550600 0 0 0 0 0 13223 1174 12888 248983;248984;248985;248986;248987;248988;248989;248990;248991 152764 152764 1 LNSLGHPR Unmodified 892.4879 0.48789897 381 P0A7Y8 rnpA Ribonuclease P protein component yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 11.363 11.543 2 0.00033509 2374 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 145.04 119.43 27886000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3085100 0 0 0 0 6675700 6099300 12026000 13224 381 12889 248992;248993;248994;248995 152765;152766;152767 152767 3 LNSLLDGALK Unmodified 1042.6023 0.60226003 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.348 33.727 2 9.7114E-05 16448 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 130.75 43.915 995200000 75087000 60512000 65320000 466430 555250 0 104060000 86647000 96419000 841490 0 1144300 80340000 77602000 79834000 0 0 0 82919000 89768000 93688000 0 0 0 13225 803 12890 248996;248997;248998;248999;249000;249001;249002;249003;249004;249005;249006;249007;249008;249009;249010;249011 152768;152769;152770;152771;152772;152773;152774;152775;152776;152777;152778;152779 152769 12 LNSNLNLVAR Unmodified 1112.6302 0.63020611 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.667 24.595 2 4.7772E-09 11266 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 193.41 147.73 263670000 18499000 20317000 15627000 0 0 0 26033000 23177000 24785000 0 0 0 22957000 20695000 21642000 0 0 0 26646000 21653000 21635000 0 0 0 13226 1482 12891 249012;249013;249014;249015;249016;249017;249018;249019;249020;249021;249022;249023 152780;152781;152782 152781 3 LNSQQPEVAEQLWK Unmodified 1668.8471 0.84713476 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.664 33.215 2 6.7911E-11 16107 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.14 161.04 283190000 36320000 26762000 24844000 0 0 0 23303000 24285000 23071000 0 0 0 16920000 16355000 16929000 0 0 0 24362000 25152000 24884000 0 0 0 13227 1609 12892 249024;249025;249026;249027;249028;249029;249030;249031;249032;249033;249034;249035 152783;152784;152785;152786;152787;152788;152789;152790;152791;152792;152793 152785 3 LNTALEK Unmodified 787.44397 0.44396847 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.682 13.522 2 0.0023695 4085 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.5 52.7 2743400000 413030000 403720000 381250000 0 0 0 201800000 215520000 182960000 0 0 0 147560000 155920000 132330000 0 0 0 177310000 169290000 162690000 0 0 0 13228 1349 12893 249036;249037;249038;249039;249040;249041;249042;249043;249044;249045;249046;249047 152794;152795;152796;152797;152798;152799;152800;152801 152798 5 LNTEVGR Unmodified 787.41882 0.41881635 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 2 1 1 1 2 2 2 2 2 2 2 2 11.997 12.855 2 0.00045787 3493 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 153.61 69.588 871390000 131920000 131230000 129770000 931200 0 0 54186000 59509000 61610000 0 0 0 43077000 49445000 61264000 0 0 0 47969000 47180000 53285000 0 0 0 13229 219 12894 249048;249049;249050;249051;249052;249053;249054;249055;249056;249057;249058;249059;249060;249061;249062;249063;249064;249065;249066;249067;249068;249069 152802;152803;152804;152805;152806;152807 152805 6 LNTIHNLR Unmodified 979.55631 0.55631289 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 12.97 13.376 2 2.6916E-06 3238 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 183.9 89.49 59335000 0 7606500 0 0 0 0 0 8088400 0 0 0 0 0 0 7021000 18815000 8789300 9014900 0 0 0 0 0 0 13230 395 12895 249070;249071;249072;249073;249074;249075;249076 152808;152809;152810;152811 152808 4 LNTINHR Unmodified 866.47225 0.47224891 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.223 11.038 2 7.0406E-05 2511 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 175.93 115.58 736620000 246300000 266560000 216930000 0 0 0 0 1459000 0 0 0 0 1000500 713770 372210 0 0 0 0 0 3284300 0 0 0 13231 1919 12896 249077;249078;249079;249080;249081;249082;249083;249084 152812;152813;152814 152814 3 LNTLSPAEGSK Unmodified 1115.5823 0.58225287 68 P02413 rplO 50S ribosomal protein L15 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.418 15.731 2 2.4698E-10 4012 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 190.24 166.08 606670000 0 0 0 26224000 24766000 25763000 0 0 0 64036000 56186000 57942000 0 0 0 56862000 40694000 39882000 0 0 0 72135000 70542000 71639000 13232 68 12897 249085;249086;249087;249088;249089;249090;249091;249092;249093;249094;249095;249096 152815;152816;152817;152818;152819;152820;152821;152822;152823;152824;152825 152815 11 LNTWIADAPIALR Unmodified 1452.8089 0.80889876 70 P02919 mrcB Penicillin-binding protein 1B;Penicillin-insensitive transglycosylase;Penicillin-sensitive transpeptidase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 48.22 47.002 2 0.0011033 21923 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 70.977 61.29 11272000 0 4721100 3370500 0 0 0 0 0 0 0 0 0 0 0 3180500 0 0 0 0 0 0 0 0 0 13233 70 12898 249097;249098;249099 152826;152827 152827 0 LNVIHLILPPLR Unmodified 1396.8918 0.89184053 1949 Q06065 atoC Acetoacetate metabolism regulatory protein AtoC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 49.194 47.815 3 5.5615E-06 23771 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.69 112.5 51670000 7437800 7460200 6872200 0 0 0 4581800 3418900 3058200 0 0 0 4159900 3305300 3053200 0 0 0 3263700 0 5059400 0 0 0 13234 1949 12899 249100;249101;249102;249103;249104;249105;249106;249107;249108;249109;249110 152828;152829;152830;152831;152832 152828 2 LNVLTLNLPPLR Unmodified 1361.8395 0.83947061 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.618 51.347 2 0.0010905 24013 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 71.451 71.451 64156000 8385300 8577100 9105700 0 0 0 3887600 4591800 3850100 0 0 0 3452400 2605700 3126000 0 0 0 5759500 5563200 5251300 0 0 0 13235 162 12900 249111;249112;249113;249114;249115;249116;249117;249118;249119;249120;249121;249122 152833;152834 152834 0 LNVLVNVLGK Unmodified 1067.6703 0.67028001 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.644 41.02 2 4.8438E-09 20422 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 193.28 190.02 2454900000 201960000 176840000 158920000 3827100 3634100 3984000 121650000 119360000 102940000 4981200 3825200 3855500 159330000 153020000 166210000 4032200 2552000 3661200 339440000 355600000 334290000 11200000 11185000 8570700 13236 937 12901 249123;249124;249125;249126;249127;249128;249129;249130;249131;249132;249133;249134;249135;249136;249137;249138;249139;249140;249141;249142;249143;249144;249145;249146 152835;152836;152837;152838;152839;152840;152841;152842;152843;152844;152845;152846;152847;152848;152849;152850;152851 152839 15 LNVPANVSTEQMK Unmodified 1429.7235 0.72351415 1884 P77202 dsbG Thiol:disulfide interchange protein DsbG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.211 24.191 2 5.3502E-09 10781 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.76 165.46 371610000 37668000 39834000 39401000 0 0 0 28301000 28383000 28347000 0 0 0 23530000 21224000 26245000 0 0 0 33277000 33071000 32331000 0 0 0 13237 1884 12902 249147;249148;249149;249150;249151;249152;249153;249154;249155;249156;249157;249158 152852;152853;152854;152855;152856;152857;152858;152859;152860;152861;152862;152863;152864 152859 13 LNVPENPIIPYIEGDGIGVDVTPAMLK Unmodified 2863.5041 0.50413247 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 55.244 53.782 2;3 5.1515E-31 26791 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 196.71 193.89 8243600000 1194600000 1224500000 1079300000 0 3860500 3908200 368700000 326860000 335730000 0 0 0 501810000 513920000 489790000 0 0 0 733290000 754410000 712930000 0 0 0 13238 179 12903 249159;249160;249161;249162;249163;249164;249165;249166;249167;249168;249169;249170;249171;249172;249173;249174;249175;249176;249177;249178;249179;249180;249181;249182;249183;249184 152865;152866;152867;152868;152869;152870;152871;152872;152873;152874;152875;152876;152877;152878;152879;152880;152881;152882;152883;152884;152885;152886;152887;152888 152877 24 LNVTLTR Unmodified 815.4865 0.48650199 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 1 2 2 2 1 20.8 21.088 2 0.00010693 8009 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 173.11 128.69 1490800000 94993000 88041000 79886000 971680 639150 678650 138440000 135870000 135550000 0 0 644110 118890000 121250000 110660000 0 0 0 166410000 149240000 147830000 0 0 846440 13239 1073 12904 249185;249186;249187;249188;249189;249190;249191;249192;249193;249194;249195;249196;249197;249198;249199;249200;249201;249202;249203;249204;249205;249206;249207;249208;249209;249210 152889;152890;152891;152892;152893;152894;152895;152896;152897;152898;152899 152898 10 LNVVDCGDLVYAFGDAR Unmodified 1882.8883 0.88834765 1626 P60651 speB Agmatinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 2 2 2 2 1 2 2 50.623 49.256 2;3 1.8089E-19 23123 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 200.13 192.4 452310000 26794000 20896000 24203000 0 0 0 36428000 43334000 39356000 0 0 0 42341000 37420000 36346000 0 0 0 42610000 51114000 51470000 0 0 0 13240 1626 12905 249211;249212;249213;249214;249215;249216;249217;249218;249219;249220;249221;249222;249223;249224;249225;249226;249227;249228;249229;249230;249231;249232 152900;152901;152902;152903;152904;152905;152906;152907;152908;152909;152910;152911 152910 10 LNVVEVK Unmodified 799.48035 0.48035398 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 19.246 19.543 2 0.023497 6921 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 73.616 28.924 215810000 0 0 0 3952900 0 0 50169000 59156000 51000000 2538600 2886400 0 3019800 39908000 0 0 0 0 0 0 3180000 0 0 0 13241 1812 12906 249233;249234;249235;249236;249237;249238;249239;249240;249241 152912;152913;152914 152914 3 LNWFSNH Unmodified 916.41915 0.4191507 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.475 32.035 2 7.0296E-05 15280 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 175.94 172.1 72260000 6971300 6056700 6555100 0 0 0 7481300 6757300 5208900 0 0 0 4047900 4296000 4291700 0 0 0 7676200 6911700 6005700 0 0 0 13242 843 12907 249242;249243;249244;249245;249246;249247;249248;249249;249250;249251;249252;249253 152915;152916;152917;152918 152915 4 LNWLVNEGYYDESVLNR Unmodified 2083.0011 0.0010692176 1542 P39452 nrdE Ribonucleoside-diphosphate reductase 2 subunit alpha yes yes 0 0 0 By MS/MS 1 50.655 49.348 2 0.095091 24149 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 48.467 43.388 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13243 1542 12908 249254 152919 152919 1 LNYHFDISDIAQLMQNTGK Unmodified 2207.0681 0.068102925 1390 P32157 yiiM Protein YiiM yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.904 52.465 3 9.3308E-11 25961 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.51 127.3 373960000 56819000 48067000 45896000 0 0 0 30447000 29247000 32090000 0 0 0 27468000 22637000 21178000 0 0 0 20345000 21093000 18674000 0 0 0 13244 1390 12909 249255;249256;249257;249258;249259;249260;249261;249262;249263;249264;249265;249266 152920;152921;152922;152923;152924;152925;152926;152927 152921 8 LNYSGEGNEPVER Unmodified 1462.6688 0.66883604 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.889 17.646 2 1.2903E-05 6330 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.86 111.37 78312000 12518000 12113000 9183000 0 0 0 6965500 5371000 4685800 0 0 0 3261000 5078900 3343500 0 0 0 6207400 5704300 3880600 0 0 0 13245 1295 12910 249267;249268;249269;249270;249271;249272;249273;249274;249275;249276;249277;249278 152928;152929 152929 2 LPAAEIDPTYR Unmodified 1244.6401 0.6401021 178 P08194 glpT Glycerol-3-phosphate transporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 28.385 26.906 2 0.00063307 12436 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.247 69.976 141220000 0 0 0 0 0 0 0 0 0 0 4982700 5372000 0 46963000 0 0 0 0 23498000 31265000 26191000 2948600 0 0 13246 178 12911 249279;249280;249281;249282;249283;249284;249285;249286 152930;152931;152932;152933;152934;152935;152936 152933 3 LPAAEIDPTYRR Unmodified 1400.7412 0.74121312 178 P08194 glpT Glycerol-3-phosphate transporter yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 21.868 21.62 3 0.010862 7358 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 54.286 40.322 41828000 0 0 0 0 0 0 0 0 0 12642000 9469400 7998700 4019400 0 0 0 0 0 0 1868600 0 0 0 5830000 13247 178 12912 249287;249288;249289;249290;249291;249292 152937;152938;152939;152940 152937 4 LPAALEK Unmodified 740.44324 0.44324019 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 16.525 17.102 2 0.011869 5940 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 85.359 0 92249000 12436000 11526000 10571000 1891900 0 0 0 0 0 0 0 1666500 0 3427600 0 2065200 1953100 0 21958000 24754000 0 0 0 0 13248 477 12913 249293;249294;249295;249296;249297;249298;249299;249300;249301;249302;249303 152941;152942;152943 152943 3 LPAAQSFAALSGMEEGGK Unmodified 1762.856 0.85598488 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 41.825 40.17 2;3 1.7336E-29 19572 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 220.99 215.01 331370000 32891000 33054000 26793000 0 0 0 7775000 8447900 26737000 0 0 0 33781000 25303000 22971000 0 0 0 36902000 37609000 39109000 0 0 0 13249 1794 12914 249304;249305;249306;249307;249308;249309;249310;249311;249312;249313;249314;249315;249316;249317;249318;249319;249320;249321;249322;249323;249324;249325 152944;152945;152946;152947;152948;152949;152950;152951;152952;152953;152954;152955 152952 8 LPADDKTAIESALTALETALKGEDK Unmodified 2599.3592 0.35924237 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.879 53.414 4 0.014396 26122 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 50.432 46.77 407740000 36637000 31469000 33420000 0 0 0 42173000 38484000 38101000 0 0 0 24911000 34153000 28987000 0 0 0 31569000 27587000 40247000 0 0 0 13250 293 12915 249326;249327;249328;249329;249330;249331;249332;249333;249334;249335;249336;249337 152956;152957;152958;152959;152960 152957 1 LPAGDLVLYPSSSLHCVTPVTR Unmodified 2381.2413 0.24131626 1770 P75779 ybiX PKHD-type hydroxylase YbiX yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 42.292 40.172 3 0.0021646 19999 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.015 49.731 43998000 0 0 0 0 0 0 21430000 21495000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1073200 13251 1770 12916 249338;249339;249340 152961;152962 152962 2 LPAGLNASQSQGK Unmodified 1269.6677 0.66771383 870 P0AEL6 fepB Ferrienterobactin-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.463 17.221 2 3.0673E-12 6050 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.33 180.54 169830000 17641000 17475000 20857000 0 0 0 11098000 10258000 10418000 0 0 0 12166000 9336100 9263700 0 0 0 16074000 17011000 18233000 0 0 0 13252 870 12917 249341;249342;249343;249344;249345;249346;249347;249348;249349;249350;249351;249352 152963;152964;152965;152966;152967;152968;152969;152970;152971;152972;152973;152974 152970 8 LPAIADK Unmodified 726.42759 0.42759012 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 16.489 17.246 1;2 0.007582 6244 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.706 40.167 1308800000 42372000 41553000 46644000 0 0 0 191770000 181160000 159560000 0 0 0 138550000 121270000 100780000 0 0 0 98266000 101750000 85070000 0 0 0 13253 1805 12918 249353;249354;249355;249356;249357;249358;249359;249360;249361;249362;249363;249364;249365;249366;249367;249368;249369;249370;249371;249372;249373;249374;249375;249376 152975;152976;152977;152978;152979;152980;152981;152982;152983;152984;152985;152986 152976 9 LPAIADKDIGFILK Unmodified 1512.8916 0.89156576 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 1 43.838 42.245 2;3 4.7807E-14 20965 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 182.71 182.71 1268900000 35783000 40426000 36499000 1616200 0 1377500 170660000 153530000 164280000 0 2925500 2909100 136870000 107730000 98512000 0 0 0 106370000 103050000 105140000 0 0 1220300 13254 1805 12919 249377;249378;249379;249380;249381;249382;249383;249384;249385;249386;249387;249388;249389;249390;249391;249392;249393;249394;249395;249396;249397;249398;249399;249400;249401;249402;249403;249404;249405 152987;152988;152989;152990;152991;152992;152993;152994;152995;152996;152997;152998;152999;153000;153001;153002;153003;153004;153005;153006;153007;153008;153009 152991 23 LPALFCFPQILQHR Unmodified 1738.9341 0.93411605 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.441 51.297 3 1.2781E-08 24877 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.09 143.68 852830000 62720000 66305000 59238000 3173100 2536100 3567400 55196000 55229000 54087000 8824000 8539600 6388100 68034000 68242000 69119000 4273600 3632900 3251500 82152000 79041000 77173000 3909700 3729900 4466800 13255 1172 12920 249406;249407;249408;249409;249410;249411;249412;249413;249414;249415;249416;249417;249418;249419;249420;249421;249422;249423;249424;249425;249426;249427;249428;249429 153010;153011;153012;153013;153014;153015;153016;153017;153018;153019;153020;153021;153022;153023;153024;153025;153026;153027;153028 153025 19 LPALGGSGGLIAIDHEGNVALPFNTEGMYR Unmodified 3068.539 0.53895485 1473 P37595 iaaA Isoaspartyl peptidase;Isoaspartyl peptidase subunit alpha;Isoaspartyl peptidase subunit beta yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 52.415 51.163 3 2.6097E-23 25297 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 168.22 165.66 224630000 33233000 28326000 24818000 0 0 0 23889000 17610000 22766000 0 0 0 21858000 15079000 14235000 0 0 0 0 0 22817000 0 0 0 13256 1473 12921 249430;249431;249432;249433;249434;249435;249436;249437;249438;249439 153029;153030;153031;153032 153030 4 LPALSLGLWHNFGHVNALESQR Unmodified 2458.287 0.28696132 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 46.237 44.746 3;4 1.1307E-23 21648 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 180.13 176.15 801130000 177420000 164110000 173060000 658880 0 0 60637000 56095000 48357000 0 0 0 18648000 18754000 18450000 0 0 0 25276000 21956000 17694000 0 0 0 13257 1958 12922 249440;249441;249442;249443;249444;249445;249446;249447;249448;249449;249450;249451;249452;249453;249454;249455;249456;249457;249458;249459;249460;249461;249462;249463;249464 153033;153034;153035;153036;153037;153038;153039;153040;153041;153042 153042 10 LPANPETPVIMIGPGTGIAPFR Unmodified 2247.2086 0.20855957 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 53.721 52.289 2;3 2.2929E-88 25475 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 322.39 316.9 1530800000 183000000 137900000 160590000 0 1618300 1511700 96938000 95506000 100800000 0 0 0 109140000 110570000 102700000 0 0 0 137620000 146730000 143610000 2571400 0 0 13258 1503 12923 249465;249466;249467;249468;249469;249470;249471;249472;249473;249474;249475;249476;249477;249478;249479;249480;249481;249482;249483;249484;249485;249486;249487;249488;249489;249490;249491 153043;153044;153045;153046;153047;153048;153049;153050;153051;153052;153053;153054;153055;153056;153057;153058;153059;153060;153061;153062;153063;153064;153065 153058 22 LPAPLIGELPYLPR Unmodified 1547.9076 0.90755017 237 P0A6E9 bioD2 ATP-dependent dethiobiotin synthetase BioD 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.212 52.772 2 0.00015176 26214 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.958 84.456 85694000 0 0 1889200 0 0 0 16122000 9859300 12908000 0 0 0 9858000 11453000 10569000 0 0 0 0 5871300 7164400 0 0 0 13259 237 12924 249492;249493;249494;249495;249496;249497;249498;249499;249500 153066 153066 0 LPAQIAR Unmodified 767.46537 0.46537261 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.099 15.668 2 0.0018609 4261 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 122.51 54.75 351720000 8547100 9165900 9803500 2726000 1970200 3245100 23136000 23771000 19786000 16451000 13464000 11741000 22408000 19974000 15860000 10248000 0 12341000 40533000 33159000 32924000 6907400 8526700 5029800 13260 1781 12925 249501;249502;249503;249504;249505;249506;249507;249508;249509;249510;249511;249512;249513;249514;249515;249516;249517;249518;249519;249520;249521;249522;249523 153067;153068;153069;153070;153071;153072;153073;153074;153075;153076 153070 10 LPASILVHENSYQPLDK Unmodified 1923.0102 0.010177341 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 32.558 31.206 2;3 1.2998E-39 14031 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 290.1 277.54 3291200000 318930000 279900000 277970000 1328200 0 1021900 270830000 250890000 234240000 0 0 0 232170000 220940000 225510000 0 0 0 333390000 314650000 329410000 0 0 0 13261 1136 12926 249524;249525;249526;249527;249528;249529;249530;249531;249532;249533;249534;249535;249536;249537;249538;249539;249540;249541;249542;249543;249544;249545;249546;249547;249548;249549 153077;153078;153079;153080;153081;153082;153083;153084;153085;153086;153087;153088;153089;153090;153091;153092;153093;153094;153095 153095 19 LPATDGQVK Unmodified 927.50255 0.50254598 398 P0A855 tolB Protein TolB yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.673 13.287 2 0.0029513 3288 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 83.313 35.198 844730000 62725000 65161000 70301000 6187000 5390800 7661800 5773600 80795000 70475000 14864000 16654000 14255000 50507000 46819000 51041000 3903200 4378400 3615700 77452000 85365000 73008000 7782300 10296000 10320000 13262 398 12927 249550;249551;249552;249553;249554;249555;249556;249557;249558;249559;249560;249561;249562;249563;249564;249565;249566;249567;249568;249569;249570;249571;249572;249573 153096;153097;153098;153099;153100;153101;153102;153103;153104;153105;153106;153107;153108 153098 7 LPATIILR Unmodified 895.58549 0.58548775 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.546 32.091 2 8.1081E-05 12365 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 164.89 97.857 8755700000 89013000 84044000 67121000 0 2133400 2425200 59045000 62813000 60837000 389430000 486870000 365020000 72309000 63961000 56786000 2030800000 1338800000 1675100000 78992000 94106000 88977000 487030000 554330000 545720000 13263 463 12928 249574;249575;249576;249577;249578;249579;249580;249581;249582;249583;249584;249585;249586;249587;249588;249589;249590;249591;249592;249593;249594;249595;249596 153109;153110;153111;153112;153113;153114;153115;153116;153117;153118;153119;153120;153121;153122;153123;153124;153125;153126;153127;153128;153129;153130 153114 21 LPAVNNIYELR Unmodified 1300.7139 0.71393574 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.912 36.296 2 1.5859E-05 17848 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 140.83 122.97 1012800000 99643000 99938000 97890000 1626900 1547900 1174700 57936000 60318000 56653000 4508000 4911100 4620600 58560000 54124000 52367000 17346000 14557000 18949000 80491000 80251000 85962000 19167000 19747000 20486000 13264 1633 12929 249597;249598;249599;249600;249601;249602;249603;249604;249605;249606;249607;249608;249609;249610;249611;249612;249613;249614;249615;249616;249617;249618;249619;249620 153131;153132;153133;153134;153135;153136;153137;153138;153139;153140;153141;153142;153143;153144;153145 153134 12 LPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEK Unmodified 4180.1523 0.15231361 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 53.562 53.183 4 9.5381E-08 19831 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 81.718 77.87 20947000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7395000 5998400 0 0 0 0 0 7553300 13265 1633 12930 249621;249622;249623 153146;153147 153146 2 LPAWPTTTIGSFPQTTEIR Unmodified 2115.1001 0.10005498 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 2 2 2 2 2 1 2 2 1 50.829 49.519 2;3 1.7169E-17 24444 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 204.35 193.09 490650000 41346000 37951000 35847000 2900600 0 0 99272000 105660000 100650000 0 0 0 8873500 10440000 5057100 0 0 0 16391000 18507000 7745600 0 0 0 13266 1265 12931 249624;249625;249626;249627;249628;249629;249630;249631;249632;249633;249634;249635;249636;249637;249638;249639;249640;249641;249642;249643;249644;249645;249646 153148;153149;153150;153151;153152;153153;153154 153150 7 LPAWVMK Unmodified 843.46768 0.4676808 770 P0AD59 ivy Inhibitor of vertebrate lysozyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.43 31.744 2 0.034366 14917 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 65.897 65.897 256790000 36423000 32511000 31680000 1811200 1712400 1774800 26845000 28881000 28265000 8528100 7425600 10766000 5849800 7344000 6993900 0 0 0 7291900 0 6362200 2149000 2338100 1840400 13267 770 12932 249647;249648;249649;249650;249651;249652;249653;249654;249655;249656;249657;249658;249659;249660;249661;249662;249663;249664;249665;249666 153155;153156;153157;153158;153159;153160;153161;153162;153163;153164;153165 153161 11 LPCSLMLLPTLPPSVLGIR Unmodified 2076.1839 0.18392473 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.56 54.064 2 5.271E-14 26854 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 180.54 175.26 156460000 0 0 0 0 0 0 22291000 20119000 23695000 0 0 0 20939000 18686000 19918000 0 0 0 11282000 9674600 9853600 0 0 0 13268 1087 12933 249667;249668;249669;249670;249671;249672;249673;249674;249675 153166;153167 153166 2 LPDAPYVSDR Unmodified 1131.556 0.55603811 1369 P31473 ravA ATPase RavA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 25.488 24.378 2 0.002163 11211 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 93.649 51.997 110780000 5360200 4199200 0 0 0 0 16859000 22150000 20000000 0 0 0 6750500 7009000 7941600 0 0 0 6900100 6536000 7075800 0 0 0 13269 1369 12934 249676;249677;249678;249679;249680;249681;249682;249683;249684;249685;249686 153168;153169 153168 1 LPDAVAVSMEDHINPNCHGR Unmodified 2231.0212 0.021169508 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.174 26.945 3 0.014783 12302 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 49.973 49.851 175840000 17821000 20601000 20820000 0 0 0 11137000 12514000 13006000 0 0 0 10121000 15473000 13704000 0 0 0 15694000 15048000 9905400 0 0 0 13270 1192 12935 249687;249688;249689;249690;249691;249692;249693;249694;249695;249696;249697;249698 153170 153170 0 LPDAVEEAIEAEMEK Unmodified 1672.7866 0.78656792 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.911 49.655 3 5.6528E-07 24395 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 95.854 92.813 446180000 39281000 44238000 30280000 0 0 0 25172000 31034000 29455000 0 0 0 39582000 35586000 35240000 0 0 0 47886000 45486000 42942000 0 0 0 13271 1360 12936 249699;249700;249701;249702;249703;249704;249705;249706;249707;249708;249709;249710 153171;153172;153173;153174;153175;153176;153177;153178;153179 153173 8 LPDGAYLLNLAR Unmodified 1314.7296 0.7295858 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.626 47.247 2 2.3947E-06 23294 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 178.55 171.65 670080000 101920000 94047000 86908000 1733800 1909800 2375500 46092000 45980000 44711000 2318900 0 0 32686000 30047000 27082000 0 0 0 48675000 50378000 51196000 0 1022100 993700 13272 1788 12937 249711;249712;249713;249714;249715;249716;249717;249718;249719;249720;249721;249722;249723;249724;249725;249726;249727;249728 153180;153181;153182;153183;153184;153185;153186;153187;153188;153189;153190;153191 153182 12 LPDGTVK Unmodified 728.40685 0.40685468 536 P0A9M0 lon Lon protease yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.443 12.981 2 0.030055 3054 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 66.993 40.884 449730000 5945000 5152900 0 0 0 0 75885000 3509600 79006000 13801000 10407000 11338000 79190000 2531800 48455000 31663000 22585000 26680000 3922700 4140700 4515100 8206900 6744100 6049400 13273 536 12938 249729;249730;249731;249732;249733;249734;249735;249736;249737;249738;249739;249740;249741;249742;249743;249744;249745;249746;249747;249748 153192;153193;153194 153192 3 LPDLAVQAQQK Unmodified 1209.6717 0.67173657 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By matching 1 1 25.311 24.39 2 0.12184 10313 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 40.882 36.235 22375000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6652000 0 0 0 0 0 15723000 0 0 0 13274 1355 12939 249749;249750 153195 153195 0 LPDQPLAGK Unmodified 937.52328 0.52328142 1012 P0AGE6 chrR Chromate reductase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.126 18.742 2 0.0001886 7071 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.56 98.227 190480000 14032000 15574000 10958000 0 0 0 26824000 20904000 29337000 0 0 0 14863000 12218000 12052000 0 0 0 11523000 9795100 12400000 0 0 0 13275 1012 12940 249751;249752;249753;249754;249755;249756;249757;249758;249759;249760;249761;249762 153196;153197;153198;153199;153200;153201;153202;153203 153198 4 LPDQPLAGKPVLIQTSSMGVIGGAR Unmodified 2504.3785 0.37847845 1012 P0AGE6 chrR Chromate reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.044 40.345 3 1.5722E-10 20123 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.41 120.91 2121000000 155410000 144020000 135660000 0 0 0 258750000 270920000 245190000 0 0 0 155200000 132010000 150810000 0 0 0 156710000 158630000 157680000 0 0 0 13276 1012 12941 249763;249764;249765;249766;249767;249768;249769;249770;249771;249772;249773;249774 153204;153205;153206;153207;153208;153209;153210;153211;153212;153213;153214;153215 153204 12 LPDQPLAGKPVLIQTSSMGVIGGAR Oxidation (M) 2520.3734 0.37339307 1012 P0AGE6 chrR Chromate reductase yes yes 0 1 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.305 35.631 3 0.00082091 16517 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 63.272 62.174 185110000 16003000 17125000 14523000 0 0 0 23268000 26073000 23788000 0 0 0 12845000 12487000 10376000 0 0 0 10005000 11828000 6794200 0 0 0 13277 1012 12941 249775;249776;249777;249778;249779;249780;249781;249782;249783;249784;249785;249786 153216;153217 153217 461 2 LPDWDAK Unmodified 843.41267 0.41266834 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.173 23.098 2 0.0070744 10332 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 92.822 75.055 698810000 89257000 81289000 79846000 1317500 1084800 0 69088000 70087000 62079000 2294900 1953100 1674100 0 0 0 0 0 0 84389000 75789000 75944000 1358400 1354600 0 13278 561 12942 249787;249788;249789;249790;249791;249792;249793;249794;249795;249796;249797;249798;249799;249800;249801;249802;249803;249804;249805 153218;153219;153220;153221;153222;153223;153224;153225;153226;153227;153228;153229 153218 12 LPDYFAIGR Unmodified 1050.5498 0.54983053 200 P09126 hemD Uroporphyrinogen-III synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 40.857 39.147 2 0.0065504 19027 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 70.525 63.045 36127000 0 9647000 0 0 0 0 0 5973700 4621400 0 0 0 4421000 0 5004100 0 0 0 6459500 0 0 0 0 0 13279 200 12943 249806;249807;249808;249809;249810;249811 153230;153231 153231 2 LPEAGEDLELK Unmodified 1212.6238 0.62378333 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.819 28.312 2 1.8427E-07 13071 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 167.12 155.27 1965200000 187770000 169060000 156230000 7248800 6614800 6390000 161070000 154960000 147810000 7569600 5101500 3882600 136780000 137690000 154980000 0 0 0 174830000 174650000 163670000 2920000 2486500 3504500 13280 784 12944 249812;249813;249814;249815;249816;249817;249818;249819;249820;249821;249822;249823;249824;249825;249826;249827;249828;249829;249830;249831;249832 153232;153233;153234;153235;153236;153237;153238;153239;153240;153241;153242;153243;153244;153245 153237 14 LPEEHTK Unmodified 852.43413 0.43413207 1809 P76035 yciW Uncharacterized protein YciW yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 8.1888 8.9977 2 0.0066942 1837 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.407 77.48 7818300 2045500 1864900 2455000 0 0 0 0 0 0 0 0 0 0 434560 0 0 0 0 742530 0 275810 0 0 0 13281 1809 12945 249833;249834;249835;249836;249837;249838 153246 153246 1 LPEGDVTVDVHWSSLNYK Unmodified 2058.0058 0.0058202445 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 39.931 38.402 3 0.11623 18996 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 25.544 21.276 68860000 23286000 0 20660000 0 0 0 0 0 0 0 0 0 10720000 0 0 0 0 0 14194000 0 0 0 0 0 13282 1284 12946 249839;249840;249841;249842 153247 153247 1 LPELGALLK Unmodified 952.59572 0.59571809 889 P0AEV1 rssB Regulator of RpoS yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 43.716 42.143 2 0.00089562 21039 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.458 87.09 65206000 0 0 0 0 0 0 10818000 8478700 8074600 0 0 0 4177600 4655400 3685400 0 0 0 7256300 8736700 9323400 0 0 0 13283 889 12947 249843;249844;249845;249846;249847;249848;249849;249850;249851 153248;153249;153250;153251 153248 4 LPELMSLLR Unmodified 1070.6158 0.6158016 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.313 50.065 2 9.4327E-07 23392 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 179.21 136.09 645420000 63859000 48406000 54610000 0 0 0 71239000 70167000 81751000 0 0 0 41154000 41412000 38399000 0 0 0 46714000 45838000 41874000 0 0 0 13284 256 12948 249852;249853;249854;249855;249856;249857;249858;249859;249860;249861;249862;249863 153252;153253;153254;153255;153256;153257;153258;153259;153260;153261;153262 153261 11 LPEMINSVR Unmodified 1057.559 0.559015 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.725 26.545 2 1.2092E-05 10157 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 163.9 153.43 833720000 72977000 64193000 62005000 9775500 7847800 7255500 54938000 44555000 45735000 11406000 10825000 10392000 42521000 40528000 37992000 6197200 5940700 5349300 92247000 86142000 85924000 10647000 8709600 9615400 13285 862 12949 249864;249865;249866;249867;249868;249869;249870;249871;249872;249873;249874;249875;249876;249877;249878;249879;249880;249881;249882;249883;249884;249885;249886;249887;249888 153263;153264;153265;153266;153267;153268;153269;153270;153271;153272;153273;153274;153275;153276;153277;153278;153279;153280;153281;153282;153283;153284;153285 153266 23 LPENLKPK Unmodified 937.55967 0.55966693 285 P0A6V8 glk Glucokinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.349 13.182 2 0.0014005 3708 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.18 118.19 701350000 39345000 44252000 44422000 0 0 0 76911000 78331000 74075000 0 0 0 67375000 66751000 53870000 0 0 0 60186000 51275000 44560000 0 0 0 13286 285 12950 249889;249890;249891;249892;249893;249894;249895;249896;249897;249898;249899;249900 153286;153287;153288;153289;153290;153291;153292;153293;153294;153295;153296;153297 153288 12 LPEPLAEESLSAQAK Unmodified 1581.825 0.82500233 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.283 31.843 2 1.9148E-08 15069 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.29 130.53 123770000 16879000 17052000 16776000 0 0 0 9373100 7352000 12605000 0 0 0 5174000 6886500 4602800 0 0 0 7672500 9446800 9953000 0 0 0 13287 1353 12951 249901;249902;249903;249904;249905;249906;249907;249908;249909;249910;249911;249912 153298;153299;153300;153301;153302;153303 153303 6 LPEYLGFFAGK Unmodified 1240.6492 0.64921022 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.162 48.742 2 0.00027022 24259 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 95.502 92.238 626600000 21736000 24493000 19096000 1880700 1576400 1800300 63614000 66891000 60371000 9559500 8740500 7375300 60041000 52465000 51387000 0 0 0 57862000 54638000 51478000 4263900 3911300 3422900 13288 1742 12952 249913;249914;249915;249916;249917;249918;249919;249920;249921;249922;249923;249924;249925;249926;249927;249928;249929;249930;249931;249932;249933 153304;153305;153306;153307 153304 2 LPEYTPDVNQLYDALYNK Unmodified 2155.0474 0.047350708 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 52.943 51.516 2;3 4.4386E-22 24196 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 228.7 214.93 252720000 14499000 7804500 7195700 0 0 0 24059000 26053000 29984000 0 0 0 32776000 25368000 25099000 0 0 0 20545000 19267000 20070000 0 0 0 13289 213 12953 249934;249935;249936;249937;249938;249939;249940;249941;249942;249943;249944;249945;249946;249947;249948;249949;249950;249951;249952;249953;249954;249955 153308;153309;153310;153311;153312;153313;153314;153315;153316;153317;153318 153318 9 LPFAYAK Unmodified 808.44833 0.44832557 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.417 24.365 2 0.025731 11219 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 71.359 26.556 17849000000 528580000 544820000 471420000 21666000 22210000 19732000 2409100000 2424800000 2462800000 32683000 37327000 33239000 1704400000 1817600000 1594600000 23713000 14971000 16335000 1175900000 1230300000 1199300000 22315000 21038000 20328000 13290 212 12954 249956;249957;249958;249959;249960;249961;249962;249963;249964;249965;249966;249967;249968;249969;249970;249971;249972;249973;249974;249975;249976;249977;249978;249979 153319;153320;153321;153322;153323;153324;153325;153326;153327;153328;153329;153330;153331;153332;153333;153334;153335;153336;153337;153338;153339;153340;153341 153325 23 LPFDDGVMSQYK Unmodified 1398.649 0.64895222 1866 P76507 yfdI Uncharacterized protein YfdI yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 39.052 37.48 2 2.2979E-06 18081 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 142.83 139.24 121410000 6282300 5557500 5570600 0 0 0 0 0 7801700 0 0 0 12811000 11613000 13324000 0 0 0 21379000 18684000 18384000 0 0 0 13291 1866 12955 249980;249981;249982;249983;249984;249985;249986;249987;249988;249989 153342;153343 153342 2 LPFICELAK Unmodified 1089.5893 0.5892525 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.449 40.817 2 0.001001 16397 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 95.741 61.945 941180000 13024000 15396000 15458000 2780500 2888500 2925800 120200000 115170000 115560000 36070000 39382000 41909000 90764000 78741000 76713000 7876100 5683100 5190100 49369000 40462000 44441000 7428100 7985200 5755800 13292 25 12956 249990;249991;249992;249993;249994;249995;249996;249997;249998;249999;250000;250001;250002;250003;250004;250005;250006;250007;250008;250009;250010;250011;250012;250013 153344;153345;153346;153347;153348;153349;153350;153351;153352;153353;153354;153355;153356;153357;153358;153359;153360;153361;153362;153363;153364;153365;153366 153348 18 LPFTYAK Unmodified 838.45889 0.45889025 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 25.061 24.101 2 0.028578 10242 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 68.485 68.485 42521000 0 0 0 0 0 0 0 6385200 0 0 0 0 15495000 10337000 10303000 0 0 0 0 0 0 0 0 0 13293 1559 12957 250014;250015;250016;250017 153367;153368 153368 2 LPGAIGYVEYAYAK Unmodified 1513.7817 0.78168095 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1 3 3 2 1 1 1 3 2 2 1 1 1 2 3 3 1 1 1 42.308 40.65 2;3 3.1747E-11 18845 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 173.71 166.74 5973200000 25401000 29833000 24560000 4348900 5177300 4766300 669340000 671590000 611040000 9823500 12839000 9222000 636770000 602160000 547930000 10875000 7498100 7755900 689160000 663540000 679570000 17672000 15468000 16892000 13294 994 12958 250018;250019;250020;250021;250022;250023;250024;250025;250026;250027;250028;250029;250030;250031;250032;250033;250034;250035;250036;250037;250038;250039;250040;250041;250042;250043;250044;250045;250046;250047;250048;250049;250050;250051;250052;250053;250054;250055;250056;250057 153369;153370;153371;153372;153373;153374;153375;153376;153377;153378;153379;153380;153381;153382;153383;153384;153385;153386;153387;153388;153389;153390;153391;153392;153393;153394;153395 153394 24 LPGCSMCLAMNNDR Unmodified 1637.6782 0.67823699 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 30.301 28.961 2 9.9742E-20 13536 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 215.46 198.44 93170000 30387000 30539000 28733000 0 0 0 0 0 0 0 0 0 0 0 1884400 0 0 0 0 0 0 726550 901040 0 13295 225 12959 250058;250059;250060;250061;250062;250063 153396;153397;153398 153397 3 LPGEEGLWQIHLQDGK Unmodified 1818.9264 0.92644771 1257 P25524 codA Cytosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 39.933 38.413 2;3 9.4615E-07 18664 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.53 127.33 118480000 39581000 40449000 37203000 311570 932770 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13296 1257 12960 250064;250065;250066;250067;250068;250069;250070 153399;153400;153401;153402 153401 4 LPGEVAFFIAK Unmodified 1190.6699 0.66994566 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.102 45.565 2 8.1656E-05 22690 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 123.35 109.64 71755000 7341100 7394500 7130900 974870 926370 1077700 4241200 5325200 4430200 5542400 0 4568700 2711000 0 0 0 0 0 6661500 5104400 4494600 1869900 1960100 0 13297 78 12961 250071;250072;250073;250074;250075;250076;250077;250078;250079;250080;250081;250082;250083;250084;250085;250086;250087 153403;153404;153405;153406;153407;153408;153409;153410;153411 153405 7 LPGGQLEQAR Unmodified 1067.5724 0.57235688 659 P0ABI4 corA Magnesium transport protein CorA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.16 17.65 2 3.8221E-12 6315 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 204.62 190.47 316270000 6464100 7532600 5034900 1547300 2478200 1126600 32473000 31203000 26635000 7144000 5989900 6171000 30610000 24782000 27090000 2731600 1765500 2404800 27296000 27365000 25576000 3999800 4760300 4088800 13298 659 12962 250088;250089;250090;250091;250092;250093;250094;250095;250096;250097;250098;250099;250100;250101;250102;250103;250104;250105;250106;250107;250108;250109;250110;250111 153412;153413;153414;153415;153416;153417;153418;153419;153420;153421;153422;153423;153424;153425;153426;153427;153428;153429 153425 18 LPGGVITTK Unmodified 884.53312 0.53311783 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.625 19.925 2 0.00031838 7246 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 116.25 84.315 1593000000 133580000 150370000 128420000 1151800 1076700 1061800 121310000 121020000 106920000 1340100 1210600 1213200 110130000 97268000 101760000 0 0 0 162700000 176680000 169640000 2264900 2253400 1663300 13299 1143 12963 250112;250113;250114;250115;250116;250117;250118;250119;250120;250121;250122;250123;250124;250125;250126;250127;250128;250129;250130;250131;250132 153430;153431;153432;153433;153434;153435;153436;153437;153438;153439;153440;153441;153442 153442 13 LPGHMNVLLAEAK Unmodified 1391.7595 0.75950572 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 29.746 28.235 2;3 0.00053689 9551 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 57.804 48.914 821030000 25522000 14728000 16528000 11441000 10428000 13586000 85105000 69004000 68700000 34761000 31118000 36397000 53039000 54595000 55556000 0 0 0 65243000 63543000 57075000 15595000 21804000 17265000 13300 633 12964 250133;250134;250135;250136;250137;250138;250139;250140;250141;250142;250143;250144;250145;250146;250147;250148;250149;250150;250151;250152;250153;250154;250155;250156;250157;250158;250159;250160;250161;250162;250163;250164;250165;250166;250167;250168;250169;250170 153443;153444;153445;153446;153447;153448;153449;153450;153451;153452;153453;153454;153455 153450 9 LPGILELSR Unmodified 996.59678 0.59678072 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.33 38.718 2 4.4453E-08 19219 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 194.44 157.35 2463800000 153550000 131570000 117380000 44476000 44092000 42742000 91465000 95664000 101680000 37580000 21771000 27667000 145600000 144320000 131170000 12736000 9874800 5421600 321850000 324010000 288960000 55357000 60887000 54012000 13301 698 12965 250171;250172;250173;250174;250175;250176;250177;250178;250179;250180;250181;250182;250183;250184;250185;250186;250187;250188;250189;250190;250191;250192;250193;250194 153456;153457;153458;153459;153460;153461;153462;153463;153464;153465;153466;153467;153468;153469;153470;153471;153472;153473 153462 18 LPGKPLVDINGKPMIVHVLER Unmodified 2324.3402 0.34024245 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 35.207 33.774 4 0.079802 16247 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 32.081 32.081 88683000 14143000 0 0 0 0 0 12859000 0 0 0 0 0 5469800 8007200 8581100 0 0 0 12953000 12667000 14003000 0 0 0 13302 97 12966 250195;250196;250197;250198;250199;250200;250201;250202 153474 153474 1 LPGMGQIPDNVK Unmodified 1267.6595 0.65945733 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.199 29.805 2 1.1762E-11 11079 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 185.08 165.29 732720000 61158000 46606000 42750000 8327900 9608000 7601400 38457000 32859000 37761000 39728000 42238000 38313000 28124000 29655000 26889000 7203400 3929500 4118100 52159000 52494000 52676000 21768000 23826000 24471000 13303 1009 12967 250203;250204;250205;250206;250207;250208;250209;250210;250211;250212;250213;250214;250215;250216;250217;250218;250219;250220;250221;250222;250223;250224;250225;250226 153475;153476;153477;153478;153479;153480;153481;153482;153483;153484;153485;153486;153487;153488;153489;153490;153491;153492;153493;153494;153495;153496;153497;153498 153485 19 LPGQANR Unmodified 754.40859 0.40858602 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.973 11.697 2 0.0013909 2816 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130.84 112.17 521940000 0 0 0 0 0 619460 62030000 64003000 55382000 0 2296500 2388400 44706000 43299000 40126000 0 0 0 74538000 68217000 62671000 1663300 0 0 13304 828 12968 250227;250228;250229;250230;250231;250232;250233;250234;250235;250236;250237;250238;250239 153499;153500;153501;153502;153503 153499 5 LPGSAYIPCYEICT Unmodified 1642.7371 0.7371153 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.653 49.293 2 0.029761 23144 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 54.539 43.782 241480000 19613000 19774000 13139000 0 0 0 26091000 24919000 22782000 0 0 0 21422000 17748000 21471000 0 0 0 19060000 19646000 15810000 0 0 0 13305 801 12969 250240;250241;250242;250243;250244;250245;250246;250247;250248;250249;250250;250251 153504;153505 153505 1 LPGVEEYIK Unmodified 1046.5648 0.56481189 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.909 31.384 2 0.0039101 14409 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 79.906 54.17 1021100000 62597000 67456000 61854000 5130500 4108400 4481800 114680000 99660000 99813000 16009000 15066000 16762000 70643000 75116000 67233000 4041100 3111100 0 66186000 76267000 72236000 5627200 7064500 5988200 13306 1119 12970 250252;250253;250254;250255;250256;250257;250258;250259;250260;250261;250262;250263;250264;250265;250266;250267;250268;250269;250270;250271;250272;250273;250274 153506;153507;153508;153509;153510;153511;153512;153513;153514;153515;153516;153517 153517 12 LPGVNDTR Unmodified 870.45593 0.45593014 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.866 15.495 2 0.00083122 3926 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 121.31 108.32 455300000 61782000 72909000 74434000 1407300 0 0 12517000 10909000 10837000 0 0 0 5222400 5274900 5488500 67611000 46686000 52535000 10651000 8462500 8570900 0 0 0 13307 733 12971 250275;250276;250277;250278;250279;250280;250281;250282;250283;250284;250285;250286;250287;250288;250289;250290 153518;153519;153520;153521;153522;153523 153519 6 LPGVPLLASGGR Unmodified 1135.6713 0.67134264 1930 P77713 yagH Putative beta-xylosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 39.025 37.585 2 8.6239E-05 18337 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.048 92.567 25977000 9385500 8779900 7811600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13308 1930 12972 250291;250292;250293 153524;153525;153526 153524 3 LPHFAVSIAVR Unmodified 1208.703 0.70297712 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.22 32.624 3 9.5723E-05 15889 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.18 99.859 238610000 18134000 10523000 10900000 838240 553910 0 27529000 32199000 22703000 0 1662600 1703000 16064000 12216000 11246000 0 0 0 23616000 24422000 22721000 1581300 0 0 13309 787 12973 250294;250295;250296;250297;250298;250299;250300;250301;250302;250303;250304;250305;250306;250307;250308;250309;250310 153527;153528;153529;153530;153531;153532;153533;153534;153535;153536;153537;153538 153528 12 LPHFEQLVYPQWLHDLQQGK Unmodified 2475.2699 0.26991428 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 49.901 48.493 3;4 2.6645E-10 22820 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 120.92 120.84 1565500000 6270200 26259000 44140000 0 0 0 202400000 165640000 184760000 0 0 0 200690000 176570000 189890000 0 0 0 118190000 117660000 133050000 0 0 0 13310 1947 12974 250311;250312;250313;250314;250315;250316;250317;250318;250319;250320;250321;250322;250323;250324;250325;250326;250327;250328;250329;250330;250331;250332;250333 153539;153540;153541;153542;153543;153544;153545;153546;153547;153548;153549;153550;153551;153552;153553 153548 14 LPHRPHLR Unmodified 1024.6043 0.60426613 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 10.65 11.485 2 0.0027647 2810 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.49 81.322 194820000 1959400 0 0 0 0 0 29510000 30243000 33525000 0 0 0 13140000 14865000 16215000 0 0 0 19458000 19154000 16748000 0 0 0 13311 1088 12975 250334;250335;250336;250337;250338;250339;250340;250341;250342;250343 153554 153554 1 LPHRPHLRPAWMIR Unmodified 1778.9991 0.99911634 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.373 20.494 4 0.011382 8175 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 42.209 35.629 92686000 0 0 0 0 0 0 15126000 18112000 8952900 0 13350000 12589000 0 0 3737500 0 1394200 0 5373600 4268000 5242600 2056700 0 2483800 13312 1088 12976 250344;250345;250346;250347;250348;250349;250350;250351;250352;250353;250354;250355 153555;153556;153557;153558 153558 3 LPHYVDFQAELELLK Unmodified 1813.9614 0.96143623 1127 P16687 phnI Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 50.057 48.722 3 0.096758 23696 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 29.341 26.435 26581000 0 0 4783100 0 0 0 0 0 0 0 0 0 3088500 0 2691000 0 0 0 6520500 4502600 4995600 0 0 0 13313 1127 12977 250356;250357;250358;250359;250360;250361 153559 153559 1 LPIDLSQLK Unmodified 1025.6121 0.61209643 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.785 39.173 2 1.2194E-06 18312 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 178.83 153 3307100000 412450000 374190000 336660000 5791300 5838800 6897300 264880000 232790000 238480000 5112400 4531400 4072800 171140000 168160000 194080000 2379100 1541700 1683300 286960000 309290000 258010000 7049900 7334700 7785400 13314 228 12978 250362;250363;250364;250365;250366;250367;250368;250369;250370;250371;250372;250373;250374;250375;250376;250377;250378;250379;250380;250381;250382;250383;250384;250385 153560;153561;153562;153563;153564;153565;153566;153567;153568;153569;153570;153571;153572;153573;153574;153575;153576;153577;153578;153579;153580 153578 20 LPIHIVK Unmodified 818.53781 0.53780928 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.346 18.731 2 0.0023035 5264 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 114.67 114.67 2465500000 10867000 11273000 8911400 0 490700 0 0 0 38994000 17611000 0 0 26806000 24167000 23640000 1337800000 442920000 470190000 15441000 13280000 16005000 2399500 2525000 2149100 13315 1089 12979 250386;250387;250388;250389;250390;250391;250392;250393;250394;250395;250396;250397;250398;250399;250400;250401;250402;250403 153581;153582;153583;153584;153585;153586 153582 5 LPIIGVGGIDSVIAAR Unmodified 1549.9192 0.91917749 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.401 51.165 2 1.5958E-08 18509 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 127.17 122.92 370960000 46443000 40141000 42847000 9892500 11021000 10422000 11552000 10121000 9785100 5213100 4556300 3977700 16815000 18330000 16100000 0 0 1800200 28659000 31187000 32162000 5941700 5914600 8077400 13316 335 12980 250404;250405;250406;250407;250408;250409;250410;250411;250412;250413;250414;250415;250416;250417;250418;250419;250420;250421;250422;250423;250424;250425 153587;153588;153589;153590;153591;153592;153593 153589 4 LPIRVELQALTTSDFER Unmodified 1987.0738 0.07384023 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 45.763 43.857 3 4.11E-09 17656 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 117.18 101.78 60465000 0 0 0 5096500 4879400 4466000 0 0 0 13762000 10015000 9186300 0 0 0 0 0 0 0 0 0 3744300 4731500 4585000 13317 245 12981 250426;250427;250428;250429;250430;250431;250432;250433;250434 153594;153595;153596 153595 2 LPITVVR Unmodified 796.51707 0.51707383 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.302 24.252 2 0.00019738 10594 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.13 100.23 476220000 48016000 54764000 38772000 0 0 0 37328000 42274000 38953000 0 0 0 36784000 37126000 34147000 0 0 0 38595000 34750000 34716000 0 0 0 13318 1256 12982 250435;250436;250437;250438;250439;250440;250441;250442;250443;250444;250445;250446 153597;153598;153599;153600;153601;153602;153603;153604;153605;153606;153607;153608 153605 12 LPIVEQTPLFK Unmodified 1283.7489 0.74892426 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.815 41.174 2 1.0528E-07 19209 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 200.05 144.68 1230900000 113210000 105980000 98620000 0 0 0 99749000 95184000 77577000 0 0 0 90109000 87097000 83489000 0 0 0 128130000 132980000 118760000 0 0 0 13319 1634 12983 250447;250448;250449;250450;250451;250452;250453;250454;250455;250456;250457;250458 153609;153610;153611;153612;153613;153614;153615;153616;153617;153618;153619;153620 153619 12 LPIVIPAR Unmodified 877.57492 0.57492306 1518 P39280 epmB L-lysine 2,3-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.561 32.121 2 0.0005566 15263 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.94 93.723 132180000 14496000 12090000 10005000 0 0 0 8474900 13315000 9955100 0 0 0 8045300 6287600 7267300 0 0 0 13237000 13926000 15083000 0 0 0 13320 1518 12984 250459;250460;250461;250462;250463;250464;250465;250466;250467;250468;250469;250470 153621;153622;153623;153624;153625;153626;153627;153628;153629;153630;153631;153632 153625 12 LPIVVYTPDNVDVK Unmodified 1570.8607 0.86065956 1212 P23827 eco Ecotin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 42.595 40.839 2;3 3.7238E-11 19941 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.56 159.98 4491500000 341060000 312000000 312360000 6641800 7584700 5641100 484920000 482710000 460550000 12891000 12339000 12097000 306270000 288110000 271040000 0 0 2119300 395660000 385100000 365680000 9225400 9247100 8247300 13321 1212 12985 250471;250472;250473;250474;250475;250476;250477;250478;250479;250480;250481;250482;250483;250484;250485;250486;250487;250488;250489;250490;250491;250492;250493;250494;250495;250496;250497;250498;250499;250500;250501;250502;250503;250504 153633;153634;153635;153636;153637;153638;153639;153640;153641;153642;153643;153644;153645;153646;153647;153648;153649;153650;153651;153652;153653;153654;153655;153656;153657;153658;153659;153660;153661;153662;153663 153645 30 LPIYLDYSATTPVDPR Unmodified 1819.9356 0.93561541 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 1 1 1 1 1 1 1 2 2 2 1 46.642 45.18 2;3 2.1697E-06 22029 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128.85 125.44 2055400000 389500000 338370000 320540000 2151100 3931000 4231000 0 33689000 34266000 2361900 1988400 0 37070000 36413000 32527000 0 0 0 274790000 280170000 260770000 0 0 2620300 13322 228 12986 250505;250506;250507;250508;250509;250510;250511;250512;250513;250514;250515;250516;250517;250518;250519;250520;250521;250522;250523;250524;250525;250526;250527;250528;250529 153664;153665;153666;153667;153668;153669;153670;153671;153672;153673;153674;153675;153676 153666 12 LPKPYVMLFDLHGMDER Unmodified 2060.0223 0.022338707 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.387 43.758 4 0.00010789 17243 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 70.802 66.961 96792000 4587400 3300500 0 2595500 2358000 2433500 0 3581100 3577300 11412000 8644900 9060900 4449500 3938800 2919600 0 0 0 5511600 6051100 4194800 5709500 7236300 5229700 13323 1426 12987 250530;250531;250532;250533;250534;250535;250536;250537;250538;250539;250540;250541;250542;250543;250544;250545;250546;250547;250548 153677;153678;153679;153680;153681;153682;153683;153684 153680 8 LPLAEFHR Unmodified 981.5396 0.53960019 1456 P37095 pepB Peptidase B yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.54 22.028 2 1.7379E-06 9330 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 190.71 91.326 979120000 83310000 86702000 67162000 0 0 0 80313000 92988000 74242000 0 0 0 94805000 82234000 71140000 332910 0 0 86993000 73504000 85398000 0 0 0 13324 1456 12988 250549;250550;250551;250552;250553;250554;250555;250556;250557;250558;250559;250560;250561 153685;153686;153687;153688;153689;153690;153691;153692 153689 8 LPLALDSRPPSEAPEETLLHEQR Unmodified 2597.3449 0.34492971 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 35.78 34.205 4 5.435E-15 16725 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 135.42 131.79 626790000 0 72665000 66165000 0 0 0 65477000 52272000 59758000 0 0 0 49082000 49175000 55656000 0 0 0 48907000 55420000 52215000 0 0 0 13325 1609 12989 250562;250563;250564;250565;250566;250567;250568;250569;250570;250571;250572 153693;153694;153695;153696;153697;153698;153699;153700;153701;153702;153703 153694 11 LPLFYNLSPVNQR Unmodified 1559.846 0.84601255 1310 P27833 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 2 2 2 2 2 2 2 47.734 46.266 2;3 8.6397E-11 22882 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 211.79 202.36 272990000 15976000 13927000 12962000 0 0 0 24996000 25417000 24656000 1750500 2300500 0 26889000 20911000 17203000 0 0 0 28334000 27646000 28219000 0 0 1804800 13326 1310 12990 250573;250574;250575;250576;250577;250578;250579;250580;250581;250582;250583;250584;250585;250586;250587;250588;250589;250590;250591;250592;250593;250594;250595;250596;250597 153704;153705;153706;153707;153708;153709;153710;153711;153712 153707 9 LPLGDEYQEQLESNFADMANIGGR Unmodified 2666.2282 0.22824497 1725 P68767 pepA Cytosol aminopeptidase yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 38.823 36.77 3 0.1697 17870 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 10.119 6.7045 82700000 0 0 0 0 0 0 15945000 12713000 14873000 0 0 0 0 0 0 0 0 0 39169000 0 0 0 0 0 13327 1725 12991 250598;250599;250600;250601 153713 153713 1 LPLGNATQVQHLSDLLNMSDVVSLHVPENPSTK Unmodified 3552.8246 0.82463176 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 1 1 2 1 2 52.708 51.413 3;4 6.1663E-56 25362 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 244.87 233.22 2458900000 705570000 722580000 557100000 0 0 0 0 11340000 99135000 0 0 0 129030000 0 5397200 0 0 0 98248000 5450300 125020000 0 0 0 13328 555 12992 250602;250603;250604;250605;250606;250607;250608;250609;250610;250611;250612;250613;250614;250615;250616;250617 153714;153715;153716;153717;153718 153715 5 LPLLMATVLK Unmodified 1097.6882 0.68823826 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.299 48.918 2 0.00035108 24190 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 108.74 108.74 563090000 97907000 94544000 98145000 0 0 0 57694000 58932000 50605000 0 0 0 16886000 13800000 16338000 0 0 0 18830000 19151000 20254000 0 0 0 13329 1817 12993 250618;250619;250620;250621;250622;250623;250624;250625;250626;250627;250628;250629 153719;153720;153721;153722;153723;153724;153725;153726;153727;153728;153729;153730 153721 12 LPLMINPK Unmodified 924.54666 0.5466594 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.516 30.449 2 0.000107 13782 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 159.75 113.4 454280000 44372000 43702000 43892000 0 0 0 38390000 37332000 35631000 0 0 0 33388000 27787000 29334000 1927700 1534600 1123900 37822000 39218000 38829000 0 0 0 13330 37 12994 250630;250631;250632;250633;250634;250635;250636;250637;250638;250639;250640;250641;250642;250643;250644 153731;153732;153733;153734;153735;153736;153737;153738;153739;153740;153741;153742 153740 12 LPLPTQYQTAIK Unmodified 1371.7762 0.77620165 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 34.676 33.163 2;3 5.8303E-07 12869 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 149.49 146.86 22716000000 0 0 68206000 0 0 0 87082000 87022000 85201000 2695000000 2690800000 2597100000 80489000 78214000 67665000 3479800000 2396800000 2837900000 100180000 107190000 104110000 1788500000 1781900000 1583100000 13331 1616 12995 250645;250646;250647;250648;250649;250650;250651;250652;250653;250654;250655;250656;250657;250658;250659;250660;250661;250662;250663;250664;250665;250666;250667;250668;250669;250670;250671;250672 153743;153744;153745;153746;153747;153748;153749;153750;153751;153752;153753;153754;153755;153756;153757;153758;153759;153760;153761;153762;153763;153764;153765 153749 23 LPLTLDPVR Unmodified 1022.6124 0.61243078 625 P0AB28 yceD Uncharacterized protein YceD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.024 35.35 2 0.00015814 17139 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.22 128.62 250940000 36158000 40681000 34167000 0 0 0 11492000 12930000 11954000 0 0 0 16991000 14605000 15384000 0 0 0 20549000 17799000 18235000 0 0 0 13332 625 12996 250673;250674;250675;250676;250677;250678;250679;250680;250681;250682;250683;250684 153766;153767;153768;153769;153770;153771;153772;153773;153774;153775;153776 153771 11 LPLVHLHWYDK Unmodified 1419.7663 0.76630566 196 P09029 purK N5-carboxyaminoimidazole ribonucleotide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 1 2 2 31.997 30.785 3;4 0.0010892 14494 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 70.942 61.454 212720000 53759000 54297000 58673000 0 0 0 0 0 0 0 0 0 4803000 0 0 0 0 0 5861800 15009000 20314000 0 0 0 13333 196 12997 250685;250686;250687;250688;250689;250690;250691;250692;250693;250694;250695;250696 153777;153778;153779;153780;153781;153782 153777 6 LPMPAMAVVK Unmodified 1055.5871 0.58714401 1059 P10442 rnhB Ribonuclease HII yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 36.076 34.549 2 0.0034028 16664 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.26 54.936 52021000 3347900 0 3523800 0 0 0 0 3067400 3589600 0 0 0 4897900 4214000 5255700 0 0 0 8904900 6969300 8250000 0 0 0 13334 1059 12998 250697;250698;250699;250700;250701;250702;250703;250704;250705;250706 153783;153784 153783 2 LPMSFPR Unmodified 846.44219 0.44219433 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.836 28.454 2 0.0010668 13284 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.44 103.75 317240000 20377000 19241000 18132000 0 0 0 35682000 32753000 32747000 0 0 0 25389000 24284000 0 0 0 0 35372000 37678000 34890000 0 0 691720 13335 1421 12999 250707;250708;250709;250710;250711;250712;250713;250714;250715;250716;250717;250718 153785;153786;153787;153788;153789;153790;153791;153792;153793;153794;153795 153788 11 LPMTPITDSGR Unmodified 1186.6016 0.6016081 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.561 26.413 2 2.2896E-10 11988 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 191.17 187.06 3212100000 247860000 240670000 255740000 0 0 0 293590000 303610000 282210000 0 0 0 245090000 252400000 240350000 0 0 0 301330000 296550000 252750000 0 0 0 13336 258 13000 250719;250720;250721;250722;250723;250724;250725;250726;250727;250728;250729;250730 153796;153797;153798 153798 3 LPNGANYGFPVSTMHIVANK Unmodified 2129.0728 0.072794373 954 P0AFM2 proX Glycine betaine-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.81 37.137 3 0.0019427 18375 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 58.592 58.408 950700000 99991000 82679000 78083000 0 0 0 79298000 77355000 87870000 0 0 0 49899000 38720000 46759000 0 0 0 97438000 104100000 108520000 0 0 0 13337 954 13001 250731;250732;250733;250734;250735;250736;250737;250738;250739;250740;250741;250742 153799;153800;153801;153802;153803;153804;153805;153806 153801 8 LPNGVLR Unmodified 767.46537 0.46537261 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.991 19.322 2 0.0010258 5709 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 138.53 77.205 1142000000 121340000 128780000 105930000 20980000 22720000 21662000 45073000 46071000 41556000 25002000 21261000 18875000 50240000 45992000 41411000 13729000 9559300 11328000 93322000 92592000 84369000 27300000 24330000 28607000 13338 364 13002 250743;250744;250745;250746;250747;250748;250749;250750;250751;250752;250753;250754;250755;250756;250757;250758;250759;250760;250761;250762;250763;250764;250765;250766 153807;153808;153809;153810;153811;153812;153813;153814;153815;153816;153817;153818;153819;153820;153821;153822;153823;153824;153825;153826;153827;153828;153829;153830 153807 24 LPNNSSPFYSTMGFLVR Unmodified 1928.9455 0.94546859 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.726 51.42 2;3 5.822E-31 25147 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 229.75 214.21 1470200000 142590000 134820000 126450000 0 0 0 121700000 121770000 115410000 0 0 0 111330000 101110000 100680000 0 0 0 127430000 133390000 133480000 0 0 0 13339 1132 13003 250767;250768;250769;250770;250771;250772;250773;250774;250775;250776;250777;250778;250779;250780;250781;250782;250783;250784;250785;250786;250787;250788;250789;250790 153831;153832;153833;153834;153835;153836;153837;153838;153839;153840;153841;153842;153843;153844;153845;153846;153847;153848;153849;153850;153851;153852;153853;153854 153845 24 LPNPTLAVTDGK Unmodified 1224.6714 0.67140222 1598 P52007 yecM Protein YecM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.909 27.653 2 2.3909E-05 12246 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 138.25 126.02 185700000 19858000 20624000 17996000 0 0 0 13749000 15204000 11618000 0 0 0 12526000 14194000 13808000 0 0 0 16160000 15603000 14358000 0 0 0 13340 1598 13004 250791;250792;250793;250794;250795;250796;250797;250798;250799;250800;250801;250802 153855;153856;153857;153858;153859;153860;153861;153862 153860 8 LPPASSSTTSGASNTSSTSQGDIMDQR Unmodified 2682.2039 0.20388072 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 23.281 22.454 3 2.7197E-16 9763 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.45 147.8 187460000 5771300 5406700 0 5006400 3329500 3322300 15403000 11522000 13219000 5437400 2274400 7294900 9992700 8423400 10281000 0 0 0 17094000 18702000 14775000 11366000 9011900 9828800 13341 649 13005 250803;250804;250805;250806;250807;250808;250809;250810;250811;250812;250813;250814;250815;250816;250817;250818;250819;250820;250821;250822;250823;250824;250825 153863;153864;153865;153866;153867;153868;153869;153870;153871;153872;153873;153874;153875;153876;153877;153878;153879;153880 153865 17 LPPEQVVAEVSSR Unmodified 1409.7514 0.75144346 685 P0ABV6 tolR Protein TolR yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 31.811 30.122 2 0.0010454 11275 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 68.069 57.545 19283000 0 0 0 1198200 917140 970830 0 0 0 3803500 3092500 3144000 0 0 0 718650 0 0 0 0 0 0 2551000 2887500 13342 685 13006 250826;250827;250828;250829;250830;250831;250832;250833;250834 153881;153882;153883 153883 3 LPPEVNLIAVAHYLQALECQR Unmodified 2433.2838 0.28384978 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.989 53.533 3 5.3243E-22 26642 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.89 144.24 1647800000 0 0 9183700 1228800 1744500 1430500 151310000 133470000 147540000 43698000 41977000 43113000 154260000 144130000 134490000 0 0 0 172960000 185260000 174250000 40352000 32825000 34545000 13343 723 13007 250835;250836;250837;250838;250839;250840;250841;250842;250843;250844;250845;250846;250847;250848;250849;250850;250851;250852;250853 153884;153885;153886;153887;153888;153889;153890;153891;153892;153893;153894;153895;153896;153897;153898 153887 15 LPPFIEIYR Unmodified 1146.6437 0.64373091 1229 P23908 argE Acetylornithine deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.193 45.748 2 5.2467E-05 22689 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 148.38 139.52 210270000 25863000 25687000 28263000 0 592730 418450 17976000 15945000 16040000 0 0 0 14827000 12978000 11612000 0 0 0 11151000 12701000 12854000 1122400 1177900 1059000 13344 1229 13008 250854;250855;250856;250857;250858;250859;250860;250861;250862;250863;250864;250865;250866;250867;250868;250869;250870 153899;153900;153901;153902;153903;153904;153905;153906;153907;153908;153909;153910 153900 12 LPPVDVETQPGVR Unmodified 1405.7565 0.75652884 140 P06988 hisD Histidinol dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.137 26.931 2 3.9228E-07 12340 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 148.96 121.63 176540000 29817000 24199000 20016000 0 0 0 10475000 15193000 12894000 0 0 0 10517000 8829200 9622000 0 0 0 13869000 10938000 10169000 0 0 0 13345 140 13009 250871;250872;250873;250874;250875;250876;250877;250878;250879;250880;250881;250882 153911;153912;153913;153914;153915;153916;153917;153918;153919;153920;153921;153922 153917 12 LPPVVPAGPNNPLGR Unmodified 1496.8463 0.8463469 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.751 35.005 2 2.9249E-11 17045 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.99 156.58 552270000 91581000 76512000 71466000 0 503330 485050 75830000 67068000 73510000 953550 1252400 1329400 15148000 18463000 14944000 0 0 0 16711000 14647000 11861000 0 0 0 13346 1831 13010 250883;250884;250885;250886;250887;250888;250889;250890;250891;250892;250893;250894;250895;250896;250897;250898;250899 153923;153924;153925;153926;153927;153928;153929;153930;153931;153932;153933;153934 153925 12 LPQEDWGYDMR Unmodified 1408.6082 0.60815004 1902 P77376 ydgJ Uncharacterized oxidoreductase YdgJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.015 33.558 2 1.9453E-05 15906 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.96 136.96 98322000 13872000 13131000 8649800 0 0 0 6684700 8692400 7804600 0 0 0 4032100 4160800 5674900 0 0 0 8116700 9785600 7716500 0 0 0 13347 1902 13011 250900;250901;250902;250903;250904;250905;250906;250907;250908;250909;250910;250911 153935;153936;153937 153937 3 LPQEVQAVLNQK Unmodified 1365.7616 0.76161421 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.482 33.034 2 9.8156E-17 15585 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206.48 195.26 224310000 25501000 25040000 20051000 0 0 0 15502000 19466000 15904000 0 0 0 18317000 12747000 12847000 0 0 0 20013000 18785000 20133000 0 0 0 13348 1609 13012 250912;250913;250914;250915;250916;250917;250918;250919;250920;250921;250922;250923 153938;153939;153940;153941;153942;153943;153944;153945;153946;153947;153948;153949 153946 3 LPQHVLPLFGLCLGWPADNPDLKPR Unmodified 2852.516 0.51597498 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.961 51.529 3;4 7.8566E-23 25442 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 177.5 177.5 3216300000 329700000 339030000 345110000 0 0 0 201880000 222090000 187910000 0 0 0 239680000 240240000 236080000 0 0 0 267470000 317990000 289170000 0 0 0 13349 1136 13013 250924;250925;250926;250927;250928;250929;250930;250931;250932;250933;250934;250935;250936;250937;250938;250939;250940;250941;250942;250943;250944;250945;250946;250947 153950;153951;153952;153953;153954;153955;153956;153957;153958;153959;153960;153961;153962;153963;153964;153965;153966;153967;153968 153960 16 LPQLGIEFSGPGAK Unmodified 1412.7664 0.76636524 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 41.76 40.243 2;3 1.1693E-14 14886 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 194.48 183.65 5557100000 368000000 314530000 346270000 1248300 1195700 1240900 299650000 294090000 274090000 1780300 1964200 1994100 407250000 366770000 344060000 615000000 394650000 393570000 356530000 381220000 384400000 2462500 2736100 2445900 13350 712 13014 250948;250949;250950;250951;250952;250953;250954;250955;250956;250957;250958;250959;250960;250961;250962;250963;250964;250965;250966;250967;250968;250969;250970;250971;250972;250973;250974;250975;250976;250977;250978;250979;250980;250981;250982;250983;250984;250985;250986 153969;153970;153971;153972;153973;153974;153975;153976;153977;153978;153979;153980;153981;153982;153983;153984;153985;153986;153987 153969 19 LPQNITLTEV Unmodified 1126.6234 0.6233894 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.021 43.586 2 0.00097829 21245 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 87.435 86.052 547290000 44324000 44521000 37386000 0 0 0 61307000 61191000 64036000 0 0 0 33937000 31596000 30675000 0 0 0 45715000 51979000 40627000 0 0 0 13351 1505 13015 250987;250988;250989;250990;250991;250992;250993;250994;250995;250996;250997;250998 153988;153989;153990;153991;153992 153989 3 LPQPVAEQAHK Unmodified 1216.6564 0.65642086 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 1 2 2 1 1 2 2 2 2 2 12.805 13.456 2;3 4.1265E-05 3351 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 96.626 89.608 1156000000 39386000 48651000 48530000 42610000 37260000 41893000 8327200 8929200 0 78667000 57311000 63480000 7544800 36349000 39203000 0 1209200 0 35077000 136610000 144980000 115740000 90329000 73902000 13352 215 13016 250999;251000;251001;251002;251003;251004;251005;251006;251007;251008;251009;251010;251011;251012;251013;251014;251015;251016;251017;251018;251019;251020;251021;251022;251023;251024;251025;251026;251027;251028;251029;251030;251031;251032;251033;251034;251035 153993;153994;153995;153996;153997;153998;153999;154000;154001;154002;154003;154004;154005;154006 153996 14 LPQSVLDAEIAR Unmodified 1310.7194 0.71941505 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.078 33.483 2 3.9028E-06 16304 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 134.57 120.36 812010000 3948200 3966400 3272900 0 0 0 186960000 179510000 178450000 0 4235800 4792000 60675000 61564000 53077000 0 0 0 22789000 24651000 24109000 0 0 0 13353 1861 13017 251036;251037;251038;251039;251040;251041;251042;251043;251044;251045;251046;251047;251048;251049;251050 154007;154008;154009;154010;154011;154012;154013;154014;154015;154016;154017 154011 9 LPQVASPLTFATEEEIR Unmodified 1899.9942 0.99419293 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 49.278 47.912 2;3 5.4432E-31 22509 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 265.22 260.05 2455700000 187450000 170530000 171620000 475320 0 0 237690000 201500000 197250000 0 0 0 196090000 181510000 195750000 0 0 0 246460000 254330000 215000000 0 0 0 13354 1120 13018 251051;251052;251053;251054;251055;251056;251057;251058;251059;251060;251061;251062;251063;251064;251065;251066;251067;251068;251069;251070;251071;251072;251073;251074;251075 154018;154019;154020;154021;154022;154023;154024;154025;154026;154027;154028;154029;154030;154031;154032 154030 15 LPQVEGTGGDVQPSQDLVR Unmodified 1994.0069 0.006882877 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 32.208 30.751 2;3 1.5803E-46 14570 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 334.79 331.66 1656800000 213810000 199200000 186720000 1548500 0 0 186510000 186630000 179220000 3738600 3173500 2805900 88144000 80062000 75293000 0 0 0 79075000 86054000 84806000 0 0 0 13355 1662 13019 251076;251077;251078;251079;251080;251081;251082;251083;251084;251085;251086;251087;251088;251089;251090;251091;251092;251093;251094;251095;251096;251097;251098;251099;251100;251101;251102;251103 154033;154034;154035;154036;154037;154038;154039;154040;154041;154042;154043;154044;154045;154046;154047;154048;154049;154050;154051 154041 19 LPSAAINLVTAHDGFTLR Unmodified 1895.0265 0.026496107 1104 P15067 glgX Glycogen debranching enzyme yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 44.185 42.575 3 0.0026537 20584 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 56.936 47.53 117100000 21617000 0 0 0 0 0 29120000 17858000 17803000 0 0 0 9063600 12234000 0 0 0 0 0 0 9404700 0 0 0 13356 1104 13020 251104;251105;251106;251107;251108;251109;251110 154052;154053;154054 154054 3 LPSAALTFTPHDGR Unmodified 1481.7627 0.76267685 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.371 27.123 3 1.2252E-05 12499 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 73.887 73.724 285240000 32517000 23863000 22623000 0 0 0 28896000 23820000 28961000 0 0 0 16990000 19718000 21720000 0 0 0 19569000 26012000 20550000 0 0 0 13357 389 13021 251111;251112;251113;251114;251115;251116;251117;251118;251119;251120;251121;251122 154055;154056;154057;154058 154056 4 LPSALDNRPLK Unmodified 1222.7034 0.70337105 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 19.588 20.078 2;3 1.7221E-05 7762 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 158.57 147.41 406400000 58775000 55986000 47961000 0 0 0 42604000 41225000 37398000 0 0 0 25396000 18967000 20365000 0 0 0 22895000 19059000 15773000 0 0 0 13358 426 13022 251123;251124;251125;251126;251127;251128;251129;251130;251131;251132;251133;251134;251135;251136;251137;251138;251139;251140;251141;251142;251143;251144;251145;251146 154059;154060;154061;154062;154063 154061 5 LPSCGFSAQAVQALAACGER Unmodified 2091.983 0.98299309 705 P0AC69 grxD Glutaredoxin-4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 2 2 2 2 2 2 2 1 3 2 2 2 1 1 2 3 3 1 1 2 43.754 42.225 2;3 5.1514E-82 19615 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 335.23 329.74 5758100000 689120000 572020000 527070000 9555500 8915900 8528300 413780000 378110000 393590000 9927400 9721300 5889100 459040000 370560000 363870000 5525300 2542200 2858200 522990000 499980000 483970000 5761500 3708500 11063000 13359 705 13023 251147;251148;251149;251150;251151;251152;251153;251154;251155;251156;251157;251158;251159;251160;251161;251162;251163;251164;251165;251166;251167;251168;251169;251170;251171;251172;251173;251174;251175;251176;251177;251178;251179;251180;251181;251182;251183;251184;251185;251186;251187;251188;251189;251190;251191;251192;251193 154064;154065;154066;154067;154068;154069;154070;154071;154072;154073;154074;154075;154076;154077;154078;154079;154080;154081;154082;154083;154084;154085;154086;154087;154088;154089;154090;154091;154092;154093;154094;154095;154096;154097 154097 32 LPSDAGSNITYR Unmodified 1292.6361 0.63607935 1379 P31697 fimC Chaperone protein FimC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 20.91 21.332 2 1.8391E-05 8528 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 123.79 114.93 57135000 8443200 7492000 7977000 0 0 0 0 0 4994400 0 0 0 3265800 3631700 3762100 0 0 0 4556600 6516700 6495400 0 0 0 13360 1379 13024 251194;251195;251196;251197;251198;251199;251200;251201;251202;251203 154098;154099;154100;154101;154102;154103 154099 5 LPSDWLLSAGLINGR Unmodified 1610.878 0.87804096 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 54.484 52.972 2 1.3497E-08 26342 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 144.7 122.14 104570000 5999900 8521100 6124200 0 0 0 29558000 29474000 24887000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13361 1265 13025 251204;251205;251206;251207;251208;251209 154104 154104 1 LPSPQVVGAESEEEDASHAA Unmodified 2021.9178 0.9177931 758 P0ACY9 yebG Uncharacterized protein YebG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 28.937 27.898 2 5.2042E-23 12854 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 186.56 186.56 44375000 16656000 11535000 16185000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13362 758 13026 251210;251211;251212 154105;154106;154107 154106 3 LPSQNIAVVR Unmodified 1095.64 0.64004252 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.44 22.623 2 1.3132E-05 10015 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 152.63 113.84 7723700000 45755000 0 0 4749000 0 0 916320000 867560000 769670000 18059000 15834000 13875000 841270000 779760000 754180000 0 4566100 5413300 771280000 917320000 947070000 15721000 15966000 19359000 13363 994 13027 251213;251214;251215;251216;251217;251218;251219;251220;251221;251222;251223;251224;251225;251226;251227;251228;251229;251230;251231 154108;154109;154110;154111;154112;154113;154114;154115;154116;154117;154118;154119;154120;154121 154111 14 LPSQPLPIIGSGK Unmodified 1305.7656 0.76563696 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.094 35.313 2 1.6738E-09 16872 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 177.04 175.97 913820000 127360000 116930000 99266000 0 0 0 77162000 83734000 80528000 0 1432800 1282000 50434000 44205000 48744000 0 0 0 58845000 59913000 63990000 0 0 0 13364 1830 13028 251232;251233;251234;251235;251236;251237;251238;251239;251240;251241;251242;251243;251244;251245 154122;154123;154124;154125;154126;154127;154128;154129;154130;154131;154132;154133 154130 11 LPTGSGANISIDK Unmodified 1271.6721 0.67213051 1647 P62615 ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 23.356 22.727 2 0.00055225 10101 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 80.245 67.153 74823000 13609000 14595000 11766000 0 0 0 9252800 0 0 0 0 0 4241400 4428500 4599500 0 0 0 0 7631000 4698900 0 0 0 13365 1647 13029 251246;251247;251248;251249;251250;251251;251252;251253;251254;251255;251256 154134;154135;154136 154135 3 LPTGSGANISIDKR Unmodified 1427.7732 0.77324153 1647 P62615 ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase yes yes 0 0 1 By MS/MS 1 17.726 18.441 3 0.085066 6515 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 23.055 14.262 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13366 1647 13030 251257 154137 154137 1 LPTGVGYDWTGMSYQER Unmodified 1958.8833 0.88326227 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 44.158 42.342 2 2.3591E-10 16929 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 172.57 129.76 112110000 5525100 5612900 0 0 0 0 13784000 13216000 11815000 6181500 6389500 5103000 0 10495000 10033000 0 0 0 9645300 0 10600000 0 3706700 0 13367 1365 13031 251258;251259;251260;251261;251262;251263;251264;251265;251266;251267;251268;251269;251270 154138;154139;154140 154139 3 LPTIIDAPAQEFATIYVSGGK Unmodified 2190.1572 0.15723551 608 P0AAR3 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK yes yes 0 0 0 By MS/MS By matching 1 1 54.365 52.935 3 0.16093 26224 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 30 26.142 10812000 5845600 4966600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13368 608 13032 251271;251272 154141 154141 0 LPTLTADQK Unmodified 985.54441 0.5444108 791 P0ADK0 yiaF Uncharacterized protein YiaF yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.116 20.512 2 4.2164E-05 8300 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 151.04 131.33 482650000 16153000 16627000 12304000 2038500 1712400 1299200 66864000 64750000 62053000 0 0 0 38978000 31818000 30354000 0 0 0 47435000 43255000 47010000 0 0 0 13369 791 13033 251273;251274;251275;251276;251277;251278;251279;251280;251281;251282;251283;251284;251285;251286;251287 154142;154143;154144;154145;154146;154147;154148;154149;154150;154151 154143 10 LPTLTADQKK Unmodified 1113.6394 0.63937381 791 P0ADK0 yiaF Uncharacterized protein YiaF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 15.247 15.386 2 0.00064594 4220 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 98.033 90.744 17562000 0 0 0 0 0 0 0 0 0 3544100 4047200 4964500 0 0 0 0 0 0 0 0 0 1722200 1430000 1853500 13370 791 13034 251288;251289;251290;251291;251292;251293 154152;154153;154154 154152 3 LPTPEEYQTYVAQVDK Unmodified 1879.9204 0.92035928 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 40.489 38.787 2;3 2.4878E-18 18568 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 218.31 188.77 3447500000 544300000 519990000 470230000 1963700 1830300 1679200 149870000 133140000 160910000 0 0 0 166520000 169120000 152330000 0 0 0 319200000 325000000 327410000 1504300 2526700 0 13371 1444 13035 251294;251295;251296;251297;251298;251299;251300;251301;251302;251303;251304;251305;251306;251307;251308;251309;251310;251311;251312;251313;251314;251315;251316;251317;251318;251319;251320;251321;251322;251323 154155;154156;154157;154158;154159;154160;154161;154162;154163;154164;154165;154166;154167;154168;154169;154170;154171;154172;154173;154174;154175;154176;154177;154178;154179;154180;154181;154182;154183 154175 29 LPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLAR Unmodified 4217.1044 0.10443544 347 P0A7I7 ribA GTP cyclohydrolase-2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.347 53.899 5 1.2481E-22 26787 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.29 138.21 1065900000 82288000 72193000 72688000 1554500 0 2161500 106560000 96448000 105270000 0 0 0 78344000 62716000 59203000 0 0 0 131390000 102580000 92512000 0 0 0 13372 347 13036 251324;251325;251326;251327;251328;251329;251330;251331;251332;251333;251334;251335;251336;251337 154184;154185;154186;154187;154188;154189;154190;154191 154185 8 LPTQSSQLYGTNLVNLLK Unmodified 1988.0942 0.094241321 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.24 49.914 2 5.1217E-29 20319 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 211.51 203.41 420690000 0 0 0 1808700 1971500 1701900 51390000 59713000 56147000 6843900 6603700 4847800 31739000 31985000 27845000 0 0 0 47754000 41115000 46791000 2438600 0 0 13373 146 13037 251338;251339;251340;251341;251342;251343;251344;251345;251346;251347;251348;251349;251350;251351;251352;251353 154192;154193;154194;154195;154196;154197;154198 154192 2 LPTRDELAAYK Unmodified 1275.6823 0.68230126 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 1 1 19.979 20.484 2;3 0.028816 8011 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.398 39.528 127510000 46182000 40609000 37686000 1162300 1074800 798240 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13374 1374 13038 251354;251355;251356;251357;251358;251359;251360;251361;251362;251363 154199;154200;154201 154200 3 LPVEFVPVR Unmodified 1054.6175 0.61751616 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.578 36.804 2 9.5966E-05 18372 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 137.18 137.18 2648900000 372680000 364590000 355420000 891590 982640 924980 247130000 216410000 207620000 1769000 1769000 1746700 125290000 137830000 114110000 532390 0 0 167610000 164210000 164280000 1064700 972400 1051700 13375 43 13039 251364;251365;251366;251367;251368;251369;251370;251371;251372;251373;251374;251375;251376;251377;251378;251379;251380;251381;251382;251383;251384;251385 154202;154203;154204;154205;154206;154207;154208;154209;154210;154211;154212 154202 11 LPVHNIYAEYVHFADLNAPLNDDEHAQLER Unmodified 3502.6906 0.69058112 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 2 2 2 2 2 2 44.504 42.999 4;5 1.1241E-31 20910 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 190.6 187.87 1073200000 269240000 234930000 248940000 0 1501700 0 19830000 32172000 13025000 0 0 0 34413000 30994000 27401000 0 0 0 49425000 65928000 45429000 0 0 0 13376 1107 13040 251386;251387;251388;251389;251390;251391;251392;251393;251394;251395;251396;251397;251398;251399;251400;251401;251402;251403;251404;251405;251406;251407;251408;251409 154213;154214;154215;154216;154217;154218;154219;154220;154221;154222;154223;154224 154219 12 LPVLFAIDR Unmodified 1042.6175 0.61751616 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.533 46.004 2 2.6786E-05 22446 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155 145.78 232920000 18311000 13678000 11921000 6046900 5710400 5547300 11452000 10064000 11620000 11977000 10499000 11883000 7618600 8361500 9513900 0 0 0 15115000 17640000 16499000 10572000 9675400 9214200 13377 1909 13041 251410;251411;251412;251413;251414;251415;251416;251417;251418;251419;251420;251421;251422;251423;251424;251425;251426;251427;251428;251429;251430 154225;154226;154227;154228;154229;154230;154231;154232;154233;154234;154235;154236;154237;154238;154239;154240 154235 16 LPVLSAAAPFK Unmodified 1112.6594 0.65938097 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.508 37.835 2 7.4209E-06 17568 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 149.94 149.94 410770000 52609000 51007000 51846000 0 0 0 39444000 32102000 28028000 0 0 0 24249000 25157000 24259000 0 0 0 26313000 25708000 30045000 0 0 0 13378 184 13042 251431;251432;251433;251434;251435;251436;251437;251438;251439;251440;251441;251442 154241;154242;154243;154244;154245;154246;154247;154248;154249;154250;154251;154252 154251 12 LPVPAPMAVGAIQTR Unmodified 1519.8545 0.85446874 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 1 1 2 2 1 41.501 39.79 2;3 2.4311E-06 19305 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.01 124.03 296710000 59382000 55763000 47503000 0 0 0 21471000 20923000 19724000 0 0 0 7238000 8671400 8758600 0 0 0 16820000 16861000 13595000 0 0 0 13379 218 13043 251443;251444;251445;251446;251447;251448;251449;251450;251451;251452;251453;251454;251455;251456;251457;251458;251459;251460;251461;251462 154253;154254;154255;154256;154257;154258;154259;154260;154261 154258 9 LPVTILSR Unmodified 897.56475 0.56475231 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.962 30.623 2 0.00018486 14460 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.73 101.04 228340000 26572000 21388000 22436000 0 0 0 24589000 17583000 19764000 0 0 0 13806000 10215000 11456000 0 0 0 21437000 18459000 20638000 0 0 0 13380 127 13044 251463;251464;251465;251466;251467;251468;251469;251470;251471;251472;251473;251474 154262;154263;154264 154263 3 LPVVATLNELSEEALIQILK Unmodified 2192.2668 0.26678596 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.857 54.384 3 1.6407E-14 26856 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.73 137.58 148520000 10375000 11677000 12196000 0 0 0 8590800 6738100 8324100 0 0 0 13475000 13506000 14335000 0 0 0 16640000 16834000 15830000 0 0 0 13381 244 13045 251475;251476;251477;251478;251479;251480;251481;251482;251483;251484;251485;251486 154265;154266;154267;154268;154269;154270 154265 6 LPVVATLNELSEEALIQILKEPK Unmodified 2546.4571 0.45710592 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.54 54.075 3 9.7545E-36 21855 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 190.19 190.19 60090000 0 0 0 0 8207300 0 0 2802100 0 0 15903000 0 0 0 0 0 0 0 0 0 0 11144000 10218000 11816000 13382 244 13046 251487;251488;251489;251490;251491;251492 154271;154272 154271 2 LPYGVQADEQDCQDAIAFIQPDR Unmodified 2648.2177 0.21768029 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.691 47.36 2;3 2.0401E-89 23429 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 334.51 328.61 681880000 74641000 66599000 64292000 0 0 0 69111000 59067000 67418000 0 0 0 42154000 36313000 36788000 0 0 0 56721000 51392000 57379000 0 0 0 13383 1154 13047 251493;251494;251495;251496;251497;251498;251499;251500;251501;251502;251503;251504;251505;251506;251507;251508;251509;251510;251511;251512;251513;251514;251515;251516 154273;154274;154275;154276;154277;154278;154279;154280;154281;154282;154283;154284;154285;154286;154287;154288;154289;154290;154291;154292;154293;154294 154274 20 LPYITFPEGSEEHTYLHAQR Unmodified 2387.1546 0.15460975 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 4 4 4 3 3 2 2 2 2 3 3 3 2 1 2 3 3 3 3 3 4 35.288 33.734 2;3;4;5 3.8768E-38 16133 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 204.05 198.96 22307000000 1494500000 1186700000 1114800000 1055100000 1036500000 997030000 1766200000 1703600000 368130000 123250000 106540000 130700000 807590000 893440000 867040000 35097000 24284000 30159000 1657700000 1483600000 1653600000 1205700000 1338500000 1227200000 13384 939 13048 251517;251518;251519;251520;251521;251522;251523;251524;251525;251526;251527;251528;251529;251530;251531;251532;251533;251534;251535;251536;251537;251538;251539;251540;251541;251542;251543;251544;251545;251546;251547;251548;251549;251550;251551;251552;251553;251554;251555;251556;251557;251558;251559;251560;251561;251562;251563;251564;251565;251566;251567;251568;251569;251570;251571;251572;251573;251574;251575;251576;251577;251578;251579;251580;251581;251582;251583;251584 154295;154296;154297;154298;154299;154300;154301;154302;154303;154304;154305;154306;154307;154308;154309;154310;154311;154312;154313;154314;154315;154316;154317;154318;154319;154320;154321;154322;154323;154324;154325;154326;154327;154328;154329;154330;154331;154332;154333;154334;154335;154336;154337;154338;154339;154340;154341;154342;154343;154344;154345;154346;154347;154348;154349;154350;154351;154352;154353 154322 59 LPYSKPHPQVYLDCAAK Unmodified 1986.0033 0.003317824 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 2 2 1 2 2 1 1 2 20.835 21.189 3;4 0.00010691 8384 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 71.601 67.38 178670000 7196300 7153300 13817000 530620 568920 0 17672000 18524000 19117000 0 0 0 8021300 17109000 17243000 0 0 0 11625000 12641000 27451000 0 0 0 13385 1889 13049 251585;251586;251587;251588;251589;251590;251591;251592;251593;251594;251595;251596;251597;251598;251599;251600;251601;251602;251603;251604;251605 154354;154355;154356;154357;154358 154357 4 LQAAATSAQK Unmodified 987.53491 0.53490874 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 10.726 11.426 2 1.0141E-08 2716 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.53 103.08 500390000 189020000 152510000 158870000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13386 1450 13050 251606;251607;251608 154359;154360;154361 154361 3 LQAADVACR Unmodified 1002.4917 0.49166372 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.185 15.008 2 4.973E-06 4874 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 173.68 167.22 679690000 70662000 73309000 78316000 1176700 1076400 899350 59041000 62562000 59354000 0 0 0 36923000 35343000 27935000 0 0 0 51759000 59717000 61616000 0 0 0 13387 328 13051 251609;251610;251611;251612;251613;251614;251615;251616;251617;251618;251619;251620;251621;251622;251623 154362;154363;154364;154365;154366;154367;154368;154369;154370 154363 9 LQADAAHSALK Unmodified 1123.5986 0.59857163 791 P0ADK0 yiaF Uncharacterized protein YiaF yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.223 12.837 2 7.8991E-05 2983 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 123.86 97.407 434480000 17374000 13984000 11894000 5186600 5438500 4333200 44948000 39223000 38116000 21837000 15959000 20222000 27169000 25692000 22784000 4570200 986950 1232000 34558000 24359000 34565000 5992700 6671800 7384500 13388 791 13052 251624;251625;251626;251627;251628;251629;251630;251631;251632;251633;251634;251635;251636;251637;251638;251639;251640;251641;251642;251643;251644;251645;251646;251647 154371;154372;154373;154374;154375;154376;154377 154373 7 LQADIIK Unmodified 799.48035 0.48035398 1216 P23842 yfeA Uncharacterized protein YfeA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.181 18.797 2 0.00097355 6906 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.92 12.799 4941100000 1449500000 1649600000 1462800000 0 0 0 7255800 6987700 6621500 0 0 0 34160000 38254000 30832000 0 0 0 87141000 92247000 75614000 0 0 0 13389 1216 13053 251648;251649;251650;251651;251652;251653;251654;251655;251656;251657;251658;251659 154378;154379;154380;154381 154380 4 LQAEGLFDQQYK Unmodified 1438.7092 0.70924429 102 P04994 xseA Exodeoxyribonuclease 7 large subunit yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 33.454 32.236 2 1.237E-05 15294 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.27 126.86 17209000 0 8052600 7377000 0 0 0 0 0 0 0 0 0 0 0 1779200 0 0 0 0 0 0 0 0 0 13390 102 13054 251660;251661;251662 154382 154382 1 LQAFEGVVIAIR Unmodified 1314.766 0.76597131 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 8 3 2 2 1 1 3 3 3 2 6 5 5 1 1 1 4 4 7 3 4 4 48.896 47.515 2;3 2.6732E-18 22718 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 183.47 115.48 1030900000 139940000 161950000 127200000 14274000 14769000 13786000 29534000 28119000 31541000 21038000 20074000 19530000 57430000 45938000 34511000 11511000 2133700 6721600 61549000 68552000 55920000 21296000 22499000 21051000 13391 352 13055 251663;251664;251665;251666;251667;251668;251669;251670;251671;251672;251673;251674;251675;251676;251677;251678;251679;251680;251681;251682;251683;251684;251685;251686;251687;251688;251689;251690;251691;251692;251693;251694;251695;251696;251697;251698;251699;251700;251701;251702;251703;251704;251705;251706;251707;251708;251709;251710;251711;251712;251713;251714;251715;251716;251717;251718;251719;251720;251721;251722;251723;251724;251725;251726;251727;251728;251729;251730;251731;251732;251733;251734;251735;251736;251737;251738;251739;251740;251741;251742;251743;251744;251745;251746;251747 154383;154384;154385;154386;154387;154388;154389;154390;154391;154392;154393;154394;154395;154396;154397;154398;154399;154400;154401;154402;154403;154404;154405;154406;154407;154408;154409;154410;154411;154412;154413;154414;154415;154416;154417;154418;154419;154420;154421;154422;154423;154424;154425;154426;154427;154428;154429;154430;154431;154432;154433;154434;154435;154436;154437;154438;154439;154440;154441;154442;154443;154444;154445;154446;154447 154431 52 LQAGGYGFVISDWNMPNMDGLELLK Unmodified 2767.335 0.33495865 837 P0AE67 cheY Chemotaxis protein CheY yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.678 54.262 3 0.1471 26804 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 21.039 17.84 148910000 31844000 27632000 27927000 0 13011000 0 0 0 0 5748500 7685700 6565200 0 0 0 0 0 0 0 0 0 9055800 9905300 9533800 13392 837 13056 251748;251749;251750;251751;251752;251753;251754;251755;251756;251757 154448 154448 1 LQAHAEK Unmodified 795.4239 0.42390173 1626 P60651 speB Agmatinase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 2 2 1 1 5.1803 6.0502 2 0.0035704 1043 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.43 75.316 492340000 27796000 36528000 35633000 0 0 747710 43028000 43309000 39223000 0 0 0 36105000 42058000 37522000 0 0 0 55342000 47590000 47459000 0 0 0 13393 1626 13057 251758;251759;251760;251761;251762;251763;251764;251765;251766;251767;251768;251769;251770;251771;251772;251773 154449;154450;154451;154452;154453;154454;154455;154456;154457;154458 154452 10 LQAHPEMLNPSVPLFR Unmodified 1847.9716 0.97162377 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 1 40.468 38.725 2;3 8.7223E-14 18908 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 184.21 182.07 1217300000 204900000 181830000 158930000 1745800 2584500 1885300 82839000 74248000 80413000 2378600 0 0 57478000 61304000 49169000 0 0 0 78116000 94875000 81333000 1704600 1583300 0 13394 1788 13058 251774;251775;251776;251777;251778;251779;251780;251781;251782;251783;251784;251785;251786;251787;251788;251789;251790;251791;251792;251793;251794;251795;251796;251797;251798;251799;251800;251801;251802;251803 154459;154460;154461;154462;154463;154464;154465;154466;154467;154468;154469;154470;154471;154472;154473;154474;154475;154476 154469 18 LQAIGFTVER Unmodified 1132.6241 0.6240581 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 34.023 32.379 2 2.6293E-05 15213 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 146.69 123.26 145540000 0 0 0 0 0 0 29084000 29191000 30597000 0 0 0 0 0 0 0 0 0 3797700 30479000 22395000 0 0 0 13395 849 13059 251804;251805;251806;251807;251808;251809 154477 154477 1 LQALEIINER Unmodified 1197.6717 0.67173657 136 P06974 fliM Flagellar motor switch protein FliM yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.571 34.222 2 0.012749 12126 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 74.464 54.678 1457300000 7141800 7331200 6142100 2613100 2749200 2448200 125740000 0 106630000 0 0 0 125840000 120130000 125920000 908450 0 522300 268850000 290780000 263560000 0 0 0 13396 136 13060 251810;251811;251812;251813;251814;251815;251816;251817;251818;251819;251820;251821;251822;251823;251824;251825 154478;154479;154480 154479 2 LQALLGR Unmodified 769.48102 0.48102268 909 P0AF36 zapB Cell division protein ZapB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.446 21.939 2 8.7693E-08 7458 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 154.29 54.782 10034000000 635330000 726940000 607020000 0 0 0 1025100000 916730000 865720000 0 14033000 0 909850000 834420000 829960000 0 0 0 1020100000 798050000 850600000 0 0 0 13397 909 13061 251826;251827;251828;251829;251830;251831;251832;251833;251834;251835;251836;251837;251838;251839;251840;251841;251842;251843;251844;251845;251846;251847;251848;251849 154481;154482;154483;154484;154485;154486;154487;154488;154489;154490;154491;154492;154493;154494;154495;154496;154497;154498;154499;154500;154501;154502;154503;154504 154486 24 LQALVYR Unmodified 861.50724 0.50723743 772 P0AD68 ftsI Peptidoglycan synthase FtsI yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 22.945 22.295 2 0.040308 9709 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 79.454 45.715 23133000 0 0 0 0 0 0 0 4692700 4252500 0 0 0 4149200 0 0 0 0 0 5977900 4060400 0 0 0 0 13398 772 13062 251850;251851;251852;251853;251854 154505;154506 154506 0 LQALYLR Unmodified 875.52289 0.52288749 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.987 26.844 2 0.0061523 10457 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 96.666 49.864 116940000 11472000 0 0 0 0 0 7423700 9644100 9150100 4664900 3955300 0 11974000 0 8123400 2330100 1743900 2122100 14006000 12931000 15442000 0 0 1959000 13399 1932 13063 251855;251856;251857;251858;251859;251860;251861;251862;251863;251864;251865;251866;251867;251868;251869;251870 154507;154508;154509;154510;154511;154512;154513 154507 6 LQANLLR Unmodified 826.50249 0.5024864 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 1 1 22.736 22.519 2 0.0028253 8866 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 110.54 25.229 168580000 0 10401000 0 0 0 0 21033000 20734000 25128000 0 0 0 13066000 12481000 14583000 0 0 0 16938000 16198000 18019000 0 0 0 13400 1617 13064 251871;251872;251873;251874;251875;251876;251877;251878;251879;251880;251881;251882;251883;251884;251885;251886 154514;154515;154516;154517;154518;154519;154520;154521;154522;154523;154524 154516 11 LQANPAK Unmodified 740.41809 0.41808807 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 2 2 2 1 2 1 2 2 2 1 10.645 11.435 2 0.0021123 2584 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.06 81.469 6482700000 347710000 325880000 257160000 0 0 0 685620000 614410000 690240000 0 0 0 539730000 526650000 458640000 0 0 0 651660000 784980000 597620000 0 0 2372800 13401 1299 13065 251887;251888;251889;251890;251891;251892;251893;251894;251895;251896;251897;251898;251899;251900;251901;251902;251903;251904;251905;251906;251907 154525;154526;154527;154528;154529;154530;154531;154532;154533 154530 9 LQAVLDNGK Unmodified 956.5291 0.52909508 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 15.94 16.762 2 1.412E-05 5848 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 161.11 105.67 427000000 13341000 14844000 0 0 0 0 62955000 73489000 73049000 0 0 0 31116000 32230000 28532000 0 0 0 34803000 30699000 31938000 0 0 0 13402 167 13066 251908;251909;251910;251911;251912;251913;251914;251915;251916;251917;251918 154534;154535;154536;154537;154538;154539;154540;154541 154536 8 LQAYALPESHDIPQNK Unmodified 1822.9214 0.92136233 789 P0ADI4 entB Enterobactin synthase component B;Isochorismatase;Aryl carrier protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 1 2 2 2 2 25.175 24.185 2;3 6.6249E-06 10840 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.98 110.61 474220000 25550000 32810000 23533000 0 0 0 18763000 13828000 15876000 0 0 0 41115000 31120000 35798000 0 0 0 70652000 89650000 75528000 0 0 0 13403 789 13067 251919;251920;251921;251922;251923;251924;251925;251926;251927;251928;251929;251930;251931;251932;251933;251934;251935;251936 154542;154543;154544;154545;154546;154547;154548 154545 7 LQDAFPVLYTGR Unmodified 1378.7245 0.72450043 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.768 41.249 2 7.1988E-17 20043 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 211.64 148.07 756030000 67639000 57774000 54652000 0 0 0 99887000 79817000 73301000 0 9074200 9286300 38937000 33420000 35200000 8346800 3217300 4289800 77000000 74160000 0 8883800 9583700 11560000 13404 1409 13068 251937;251938;251939;251940;251941;251942;251943;251944;251945;251946;251947;251948;251949;251950;251951;251952;251953;251954;251955 154549;154550;154551;154552;154553;154554;154555;154556;154557;154558;154559;154560;154561;154562;154563 154561 14 LQDALGDR Unmodified 886.45084 0.45084476 1799 P75960 cobB NAD-dependent protein deacylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.861 15.295 2 7.5143E-05 4701 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 138.26 72.124 263590000 48815000 34734000 41600000 0 0 0 34872000 0 35165000 7488800 7942500 8224300 0 0 0 0 0 0 35419000 0 0 4690500 0 4641400 13405 1799 13069 251956;251957;251958;251959;251960;251961;251962;251963;251964;251965;251966;251967;251968;251969;251970 154564;154565;154566;154567;154568;154569;154570;154571;154572;154573;154574 154574 11 LQDGDLLFTR Unmodified 1176.6139 0.61388734 117 P05719 hsdS Type-1 restriction enzyme EcoKI specificity protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.926 35.269 2 0.00061434 17087 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.584 63.366 92146000 6727500 3923500 7966300 0 0 0 7734400 9083200 9033400 0 0 0 5321900 6996200 4454200 0 0 0 12111000 9854600 8940600 0 0 0 13406 117 13070 251971;251972;251973;251974;251975;251976;251977;251978;251979;251980;251981;251982 154575 154575 1 LQDGNTPCLAATPSEPR Unmodified 1825.8629 0.86286118 1201 P22634 murI Glutamate racemase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.489 23.527 2 1.5119E-06 10258 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.31 104.33 45597000 4804400 5186600 3186200 0 0 0 3517900 2677200 5291000 0 0 0 2571900 2472200 3238600 0 0 0 3892800 3822500 4935800 0 0 0 13407 1201 13071 251983;251984;251985;251986;251987;251988;251989;251990;251991;251992;251993;251994 154576;154577;154578 154577 3 LQDGNWR Unmodified 887.42496 0.42496436 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 15.025 15.419 2 0.0025188 4235 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 111.81 85.704 37067000 0 0 0 1442000 1441000 0 0 0 0 6817800 4228700 3520000 0 0 0 0 0 0 0 0 12985000 2397700 1952300 2282000 13408 690 13072 251995;251996;251997;251998;251999;252000;252001;252002;252003;252004;252005 154579;154580;154581;154582;154583 154580 5 LQDGTLLNR Unmodified 1028.5615 0.56145784 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.572 20.993 2 1.0489E-07 8157 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.68 101.04 784120000 152680000 154150000 133150000 0 0 1158800 54613000 59851000 54320000 0 0 0 24375000 20327000 19712000 0 0 0 36608000 34919000 38252000 0 0 0 13409 1091 13073 252006;252007;252008;252009;252010;252011;252012;252013;252014;252015;252016;252017;252018 154584;154585;154586;154587;154588;154589;154590;154591;154592;154593;154594 154592 11 LQDLKER Unmodified 900.50288 0.50288033 802 P0ADS2 zapA Cell division protein ZapA yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 18.208 18.611 2 0.16679 7056 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 54.525 1.842 57991000 15037000 0 0 0 0 0 24044000 18910000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13410 802 13074 252019;252020;252021 154595 154595 1 LQDPLAELVK Unmodified 1124.6441 0.64412484 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.996 42.481 2 0.00059672 20549 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 92.732 82.264 181240000 15197000 13649000 11890000 0 0 0 17302000 19450000 20640000 0 0 0 10679000 7448300 12397000 0 0 0 20069000 17086000 15433000 0 0 0 13411 1586 13075 252022;252023;252024;252025;252026;252027;252028;252029;252030;252031;252032;252033 154596;154597;154598;154599;154600;154601;154602;154603;154604;154605;154606 154601 11 LQDYAAQGAEVLHLVDLTGAK Unmodified 2211.1535 0.15354711 1054 P10371 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.179 48.773 3 1.1678E-21 23740 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128.41 127.86 396230000 46269000 43245000 38708000 0 0 0 31743000 25652000 26978000 0 0 0 29700000 29035000 31464000 0 0 0 28303000 31477000 33652000 0 0 0 13412 1054 13076 252034;252035;252036;252037;252038;252039;252040;252041;252042;252043;252044;252045 154607;154608;154609;154610;154611;154612;154613;154614;154615;154616;154617;154618 154611 12 LQEDESFTNK Unmodified 1209.5513 0.55134667 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 15.521 16.135 2 1.324E-06 5230 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 166.16 158.51 14433000000 1311800000 1413000000 1292500000 14004000 13463000 12774000 1232700000 1390200000 1303600000 8320600 8222400 8840500 940680000 807310000 887850000 0 2231100 1325700 1293000000 1263400000 1212900000 5284100 4486000 5394000 13413 666 13077 252046;252047;252048;252049;252050;252051;252052;252053;252054;252055;252056;252057;252058;252059;252060;252061;252062;252063;252064;252065;252066;252067;252068;252069;252070 154619;154620;154621;154622;154623;154624;154625;154626;154627;154628;154629;154630;154631;154632;154633;154634;154635 154633 17 LQEDHDNAAWMAEQLR Unmodified 1925.869 0.86900919 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 31.279 29.938 2;3 8.5379E-31 14086 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 250.52 226.05 792800000 74152000 59200000 54463000 0 0 0 78196000 78030000 16372000 0 0 0 62862000 70418000 57979000 0 0 0 81650000 80366000 79110000 0 0 0 13414 1778 13078 252071;252072;252073;252074;252075;252076;252077;252078;252079;252080;252081;252082;252083;252084;252085;252086;252087;252088;252089;252090;252091;252092;252093 154636;154637;154638;154639;154640;154641;154642;154643;154644;154645;154646;154647;154648;154649;154650;154651;154652;154653;154654 154647 19 LQEFLQHVS Unmodified 1099.5662 0.56620887 1053 P10346 glnQ Glutamine transport ATP-binding protein GlnQ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.408 27.007 2 0.0072899 11909 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 67.897 63.785 159320000 17748000 18434000 19351000 7449500 6196300 6496400 4100700 5413700 0 3793700 3671600 2949100 15360000 14387000 0 2848700 0 0 12097000 0 9682800 3849900 2705000 2783200 13415 1053 13079 252094;252095;252096;252097;252098;252099;252100;252101;252102;252103;252104;252105;252106;252107;252108;252109;252110;252111;252112 154655;154656;154657;154658 154658 4 LQELGATR Unmodified 886.48723 0.48723027 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.203 14.801 2 2.8941E-05 4621 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 175.24 94.859 5349100000 643450000 577090000 552160000 42477000 42638000 44693000 218710000 235280000 216090000 62998000 56474000 55436000 288440000 285030000 263290000 71998000 46611000 53949000 462850000 489320000 459270000 60789000 61591000 58446000 13416 1031 13080 252113;252114;252115;252116;252117;252118;252119;252120;252121;252122;252123;252124;252125;252126;252127;252128;252129;252130;252131;252132;252133;252134;252135;252136 154659;154660;154661;154662;154663;154664;154665;154666;154667;154668;154669;154670;154671;154672;154673;154674;154675;154676;154677;154678 154670 18 LQELKDELGDNLYIAQLDVR Unmodified 2344.2274 0.22744034 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 47.555 46.073 2;3 1.457E-96 22797 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 419.08 414.91 3428500000 351350000 310140000 316170000 1902500 1995100 1680100 339840000 353880000 306940000 3662900 2382500 2704100 236740000 215810000 209160000 0 0 0 262740000 251400000 251740000 1961700 2470600 3824000 13417 1545 13081 252137;252138;252139;252140;252141;252142;252143;252144;252145;252146;252147;252148;252149;252150;252151;252152;252153;252154;252155;252156;252157;252158;252159;252160;252161;252162;252163;252164;252165;252166;252167;252168;252169 154679;154680;154681;154682;154683;154684;154685;154686;154687;154688;154689;154690;154691;154692;154693;154694;154695;154696;154697;154698;154699;154700;154701 154682 23 LQEMQSEEYLK Unmodified 1396.6544 0.65443153 1698 P64612 zapE Cell division protein ZapE yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 1 1 1 1 1 1 1 1 1 1 24.757 23.714 2 9.0161E-06 10332 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.12 110.17 60357000 10062000 8674400 8095800 0 0 314290 4193000 3727300 3058900 0 605490 0 4163800 3224900 2820700 0 0 0 6221900 5194300 0 0 0 0 13418 1698 13082 252170;252171;252172;252173;252174;252175;252176;252177;252178;252179;252180;252181;252182;252183 154702;154703 154703 2 LQEMQSEEYLKR Unmodified 1552.7555 0.75554256 1698 P64612 zapE Cell division protein ZapE yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.472 19.729 3 0.00023038 6088 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 69.451 64.884 45356000 4365900 0 2719800 4374600 3082600 2684200 2652800 0 0 3602300 3826100 3357100 1699900 0 0 0 2130100 1604000 0 0 3276200 3453800 2526200 0 13419 1698 13083 252184;252185;252186;252187;252188;252189;252190;252191;252192;252193;252194;252195;252196;252197;252198 154704;154705;154706;154707;154708;154709;154710;154711 154706 8 LQEMVADVSHHFPLR Unmodified 1777.8934 0.89337344 54 P00936 cyaA Adenylate cyclase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 31.385 30.11 3 1.2555E-06 14097 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.07 104.77 34483000 9168200 6176700 6759300 0 0 1281100 0 0 0 0 0 0 0 0 0 0 0 0 3950200 2374100 4773100 0 0 0 13420 54 13084 252199;252200;252201;252202;252203;252204;252205 154712 154712 1 LQENSLFDIVNTIR Unmodified 1660.8784 0.87843489 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.134 32.685 3 0.17065 15568 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 6.298 1.9947 88302000 9003000 7153300 6996000 0 0 0 8173400 6556400 7281700 0 0 0 4834100 4122200 3399700 0 0 0 10222000 11874000 8686900 0 0 0 13421 188 13085 252206;252207;252208;252209;252210;252211;252212;252213;252214;252215;252216;252217 154713 154713 1 LQEQNIDSLR Unmodified 1214.6255 0.62551466 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.136 21.26 2 5.964E-07 7068 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 174.02 134.87 403690000 15134000 13970000 13142000 3923700 3815100 4663900 28072000 30843000 32950000 9476200 11488000 8568100 26594000 24617000 21079000 2255600 0 1554300 45339000 43439000 48027000 5938800 4366700 4437300 13422 997 13086 252218;252219;252220;252221;252222;252223;252224;252225;252226;252227;252228;252229;252230;252231;252232;252233;252234;252235;252236;252237;252238;252239;252240 154714;154715;154716;154717;154718;154719;154720;154721;154722;154723;154724;154725;154726;154727;154728;154729;154730;154731;154732;154733;154734 154715 21 LQESSPLPVLGAVPWSFDLIATR Unmodified 2495.3424 0.34241052 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 55.828 54.428 3 4.1133E-05 25768 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 77.894 74.282 174530000 0 0 0 0 957770 0 0 0 0 14792000 0 0 0 2170300 156610000 0 0 0 0 0 0 0 0 0 13423 539 13087 252241;252242;252243;252244 154735 154735 0 LQEYVAMLHTAAR Unmodified 1501.7711 0.77113304 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 28.58 27.511 2;3 1.6866E-05 12686 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 82.069 76.99 767360000 88499000 79842000 72382000 0 0 0 59262000 58738000 70241000 0 0 0 59917000 54562000 48329000 2894500 2589400 3932400 54735000 52991000 57356000 0 1090000 0 13424 1845 13088 252245;252246;252247;252248;252249;252250;252251;252252;252253;252254;252255;252256;252257;252258;252259;252260;252261;252262 154736;154737;154738;154739;154740;154741;154742;154743;154744;154745 154740 10 LQFALEQLLHTR Unmodified 1467.8198 0.8197978 1785 P75867 ycbZ Putative Lon protease homolog yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.548 44.927 3 1.107E-05 18065 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 119.39 114.11 152140000 4943700 4865400 3883800 2044800 3024200 2284700 10895000 8404700 9203700 11702000 12262000 9632100 5153000 6656700 8444700 0 0 0 12991000 13341000 12289000 3048800 3472100 3593000 13425 1785 13089 252263;252264;252265;252266;252267;252268;252269;252270;252271;252272;252273;252274;252275;252276;252277;252278;252279;252280;252281;252282;252283 154746;154747;154748;154749;154750;154751;154752;154753;154754;154755;154756;154757;154758;154759;154760 154748 13 LQFNAYTDNNPK Unmodified 1423.6732 0.67319314 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.724 23.727 2 2.711E-23 10609 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 234.71 232.77 283000000 24004000 18876000 18778000 0 0 0 25097000 26270000 25119000 0 0 0 22120000 19648000 14389000 0 0 0 32111000 29799000 26794000 0 0 0 13426 1548 13090 252284;252285;252286;252287;252288;252289;252290;252291;252292;252293;252294;252295 154761;154762;154763;154764;154765 154762 5 LQGCLYR Unmodified 908.45382 0.45382165 1385 P32099 lplA Lipoate-protein ligase A yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.322 16.911 2 0.0028253 5845 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 110.54 94.382 163780000 8859900 9471000 8823900 0 0 0 17718000 15269000 14198000 0 0 965220 16753000 11736000 0 2353300 1782000 1370100 20418000 18294000 15773000 0 0 0 13427 1385 13091 252296;252297;252298;252299;252300;252301;252302;252303;252304;252305;252306;252307;252308;252309;252310 154766;154767 154767 2 LQGCPVGCAWCDTK Unmodified 1650.6953 0.69526726 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.665 25.55 2 6.5358E-08 11891 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.09 134.24 422940000 34558000 30288000 29401000 0 0 0 34025000 36727000 40668000 0 0 0 27059000 29801000 28409000 0 0 0 47562000 44543000 39894000 0 0 0 13428 1685 13092 252311;252312;252313;252314;252315;252316;252317;252318;252319;252320;252321;252322 154768;154769;154770;154771;154772;154773;154774;154775;154776;154777;154778;154779 154768 12 LQGEIAHVK Unmodified 993.56073 0.56072956 17 CON__P35908 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.424 12.862 2 0.041739 2686 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 56.547 51.067 66791000 0 0 0 2490500 2814500 2935400 0 0 0 5268600 5236500 3993200 0 0 0 2670500 0 1023300 0 0 0 12413000 13411000 14534000 + 13429 17 13093 252323;252324;252325;252326;252327;252328;252329;252330;252331;252332;252333 154780 154780 1 LQGEVTISGAK Unmodified 1101.603 0.60298831 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.585 18.178 2 5.2824E-05 6620 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.86 108.72 444790000 21400000 22644000 15752000 0 1003600 0 39981000 32363000 39536000 0 534830 554740 42303000 40974000 41408000 0 0 0 47477000 48016000 50846000 0 0 0 13430 311 13094 252334;252335;252336;252337;252338;252339;252340;252341;252342;252343;252344;252345;252346;252347;252348 154781;154782;154783;154784;154785;154786;154787;154788;154789;154790;154791;154792 154786 12 LQGFIIAQDYGHR Unmodified 1516.7787 0.77866126 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.808 30.468 2;3 1.3354E-12 14554 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 195.36 157.05 790690000 136690000 136810000 136670000 0 0 0 71643000 77882000 78600000 0 0 0 24703000 21622000 23036000 0 0 0 26773000 30546000 25717000 0 0 0 13431 1817 13095 252349;252350;252351;252352;252353;252354;252355;252356;252357;252358;252359;252360;252361;252362;252363;252364;252365;252366;252367;252368;252369;252370;252371;252372 154793;154794;154795;154796;154797;154798;154799;154800;154801;154802;154803;154804;154805;154806;154807;154808;154809;154810 154798 18 LQGFNVLSYLSSHDTR Unmodified 1835.9166 0.91661131 1268 P25718 malS Alpha-amylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 47.016 45.614 3 0.075981 21433 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 32.55 31.951 120090000 0 3989000 2265300 0 0 0 8818200 11243000 9113600 0 0 0 10729000 9003300 9258500 0 0 0 20151000 19259000 16258000 0 0 0 13432 1268 13096 252373;252374;252375;252376;252377;252378;252379;252380;252381;252382;252383 154811;154812 154811 1 LQGFSPASVCIVGTHTLR Unmodified 1942.0095 0.0094658344 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 36.992 35.483 3 9.2009E-07 17001 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.227 94.502 319000000 56759000 53190000 43916000 0 0 307680 0 0 0 0 0 0 23156000 26565000 23637000 0 0 0 0 44354000 47118000 0 0 0 13433 953 13097 252384;252385;252386;252387;252388;252389;252390;252391;252392 154813;154814;154815;154816;154817;154818;154819 154817 7 LQGIAQQNSFK Unmodified 1232.6513 0.65133548 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 19.766 20.108 2 5.8469E-11 7960 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 200.05 196.46 19134000000 1697600000 1698000000 1614200000 4191400 5421600 4886800 4312200000 4199300000 4484200000 19771000 20382000 17102000 157200000 156130000 152170000 0 0 0 200430000 198800000 192150000 0 0 0 13434 1755;1756 13098 252393;252394;252395;252396;252397;252398;252399;252400;252401;252402;252403;252404;252405;252406;252407;252408;252409;252410;252411;252412;252413 154820;154821;154822;154823;154824;154825;154826;154827;154828;154829;154830;154831;154832;154833;154834;154835;154836;154837;154838;154839;154840;154841;154842;154843 154827 24 LQGNMGIGHVR Unmodified 1180.6135 0.61351019 978 P0AG16 purF Amidophosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.413 15.179 2 1.5492E-05 5102 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.23 136.9 125180000 26389000 30908000 24897000 0 0 0 3594100 4400100 3830500 0 0 0 4641400 4389400 3630400 0 0 0 5804000 5909800 6783100 0 0 0 13435 978 13099 252414;252415;252416;252417;252418;252419;252420;252421;252422;252423;252424;252425 154844;154845;154846;154847;154848;154849;154850;154851;154852;154853 154848 10 LQGQILK Unmodified 798.49634 0.49633839 1767 P75745 ybgK Uncharacterized protein YbgK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.409 16.216 2 0.0019519 5559 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 120.9 88.832 136660000 15914000 16438000 14282000 0 0 0 14091000 14574000 10867000 0 0 0 9322600 5306300 5534300 0 0 0 10811000 8563100 10959000 0 0 0 13436 1767 13100 252426;252427;252428;252429;252430;252431;252432;252433;252434;252435;252436;252437 154854;154855;154856;154857;154858;154859 154858 6 LQGTAFLVVTHDLQLAK Unmodified 1853.0411 0.041083539 1796 P75957 lolD Lipoprotein-releasing system ATP-binding protein LolD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.795 44.149 3 5.4815E-07 21487 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 105.28 101.42 173090000 9821100 12373000 9836800 0 5976000 3140000 8752100 8016800 6692200 7956500 7237400 8427200 7292400 8899000 7668200 0 0 0 14351000 15109000 11188000 7048100 7237800 6066800 13437 1796 13101 252438;252439;252440;252441;252442;252443;252444;252445;252446;252447;252448;252449;252450;252451;252452;252453;252454;252455;252456;252457 154860;154861;154862;154863;154864;154865;154866;154867;154868;154869;154870;154871 154868 12 LQGVDSVMTPPER Unmodified 1427.7079 0.70786408 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.769 27.513 2 1.076E-06 12489 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.75 130.41 732570000 83874000 78789000 62684000 0 0 0 80603000 79791000 79992000 0 0 0 49436000 49314000 42679000 0 0 0 42670000 39231000 43503000 0 0 0 13438 1284 13102 252458;252459;252460;252461;252462;252463;252464;252465;252466;252467;252468;252469 154872;154873;154874;154875;154876;154877;154878;154879;154880;154881;154882;154883 154879 10 LQHIDFVR Unmodified 1026.5611 0.56106391 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 20.954 21.096 2 0.00023409 7949 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.88 124.28 2613600000 402040000 358650000 301870000 2794700 3060700 2871300 102660000 104250000 94193000 6475900 3759400 4020500 151300000 157050000 151790000 9161600 2631500 2882100 226470000 269390000 232680000 8529200 6632500 8477000 13439 1726 13103 252470;252471;252472;252473;252474;252475;252476;252477;252478;252479;252480;252481;252482;252483;252484;252485;252486;252487;252488;252489;252490;252491;252492;252493;252494;252495 154884;154885;154886;154887;154888;154889;154890;154891;154892;154893;154894;154895;154896;154897;154898;154899;154900;154901;154902 154902 19 LQHIDFVRA Unmodified 1097.5982 0.5981777 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.248 22.5 2 0.045171 7014 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 58.23 56.041 136540000 0 0 0 8113100 8539200 8107000 0 0 0 11402000 11438000 9423600 0 0 0 17797000 4628600 6282600 0 0 0 19059000 14438000 17308000 13440 1726 13104 252496;252497;252498;252499;252500;252501;252502;252503;252504;252505;252506;252507 154903 154903 1 LQHQNLLYPDK Unmodified 1367.7197 0.7197494 117 P05719 hsdS Type-1 restriction enzyme EcoKI specificity protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.273 37.51 3 0.17138 18048 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 10.925 4.2272 994150000 80160000 66293000 72058000 2016300 2079200 1741000 132090000 126810000 138570000 3149300 6418100 4357700 64708000 59451000 0 1075600 0 0 81125000 82375000 68524000 0 1149900 0 13441 117 13105 252508;252509;252510;252511;252512;252513;252514;252515;252516;252517;252518;252519;252520;252521;252522;252523;252524;252525;252526 154904;154905;154906 154904 3 LQHYAATTPIVDMVR Unmodified 1713.8872 0.88722543 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 2 1 1 2 31.876 30.456 2;3 1.7232E-09 13791 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 186.46 170.92 2615300000 251620000 265840000 239100000 3940000 2784800 3019600 175990000 195960000 225020000 0 3965300 4528500 168340000 161980000 172570000 0 2917200 0 215120000 257040000 251770000 5154400 3586000 5009400 13442 1503 13106 252527;252528;252529;252530;252531;252532;252533;252534;252535;252536;252537;252538;252539;252540;252541;252542;252543;252544;252545;252546;252547;252548;252549;252550;252551;252552;252553;252554;252555;252556;252557;252558;252559;252560 154907;154908;154909;154910;154911;154912;154913;154914;154915;154916;154917;154918;154919;154920;154921;154922;154923;154924;154925;154926;154927;154928;154929;154930;154931;154932;154933;154934;154935;154936 154931 30 LQHYYQFQVVIKPSPDNIQELYLGSLK Unmodified 3219.6968 0.6968357 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 49.064 47.75 3;4 2.5743E-23 23114 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 177.52 177.24 2683600000 154230000 123420000 120600000 46575000 42756000 41563000 245480000 207870000 182500000 148120000 121330000 165070000 106460000 66425000 118490000 22658000 18416000 18902000 155840000 178600000 145410000 85731000 80527000 86594000 13443 61 13107 252561;252562;252563;252564;252565;252566;252567;252568;252569;252570;252571;252572;252573;252574;252575;252576;252577;252578;252579;252580;252581;252582;252583;252584;252585;252586;252587;252588;252589;252590;252591;252592;252593;252594;252595;252596;252597;252598;252599;252600;252601;252602;252603;252604;252605 154937;154938;154939;154940;154941;154942;154943;154944;154945;154946;154947;154948;154949;154950;154951;154952;154953;154954;154955;154956;154957;154958;154959;154960;154961;154962;154963;154964;154965;154966;154967;154968;154969;154970;154971;154972;154973;154974;154975;154976;154977 154962 41 LQIALALER Unmodified 1025.6233 0.62332982 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.491 36.809 2 0.00083512 18002 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.02 66.014 60000000 11731000 13619000 10016000 266330 351260 0 2595300 2823800 2638400 0 0 0 2963400 2377000 2315500 0 0 0 2938900 2922000 2441800 0 0 0 13444 204 13108 252606;252607;252608;252609;252610;252611;252612;252613;252614;252615;252616;252617;252618;252619 154978;154979;154980 154978 1 LQIINELAER Unmodified 1197.6717 0.67173657 1288 P27126 rfaS Lipopolysaccharide core biosynthesis protein RfaS yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.71 35.031 2 0.00024889 13762 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 131.44 69.44 52373000 0 0 0 655870 570610 390390 4311400 0 2941500 4748000 5126900 4510900 2323200 2553300 0 690620 0 754950 4364600 5852500 5583800 2225200 2283400 2485500 13445 1288 13109 252620;252621;252622;252623;252624;252625;252626;252627;252628;252629;252630;252631;252632;252633;252634;252635;252636;252637 154981;154982 154982 2 LQIIVAER Unmodified 940.57057 0.57056597 306 P0A734 minE Cell division topological specificity factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.96 26.54 2 0.00085144 12554 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.46 62.29 1388300000 157520000 133980000 118960000 0 0 0 149850000 140370000 133040000 5325700 5245600 5867500 102780000 0 0 0 0 0 147190000 145090000 132780000 4107700 3006300 3183400 13446 306 13110 252638;252639;252640;252641;252642;252643;252644;252645;252646;252647;252648;252649;252650;252651;252652;252653 154983;154984;154985;154986;154987;154988;154989 154983 7 LQILADEYLPVDEGGIPHDGLK Unmodified 2391.2322 0.23219137 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 47.462 46.052 2;3 5.1764E-10 22568 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.02 164.63 1658100000 254440000 237810000 215170000 0 0 0 121080000 134490000 125560000 0 0 1108000 79983000 80189000 84583000 0 0 0 107430000 102890000 113360000 0 0 0 13447 507 13111 252654;252655;252656;252657;252658;252659;252660;252661;252662;252663;252664;252665;252666;252667;252668;252669;252670;252671;252672;252673;252674;252675;252676;252677;252678 154990;154991;154992;154993;154994;154995;154996;154997;154998;154999;155000 154997 11 LQINQHYASMCNNAR Unmodified 1818.8254 0.82537023 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 1 1 1 2 2 2 1 18.601 18.831 2;3 2.9075E-27 5412 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 240.41 233.28 206640000 2384300 13387000 13938000 1698400 1941800 1979300 0 0 4011700 1929300 1390900 1232600 0 0 0 50418000 55675000 48096000 8556500 0 0 0 0 0 13448 1249 13112 252679;252680;252681;252682;252683;252684;252685;252686;252687;252688;252689;252690;252691;252692;252693;252694;252695;252696 155001;155002;155003;155004;155005;155006;155007;155008;155009;155010 155002 10 LQINSNVLQIENELYAPIRPK Unmodified 2451.3486 0.34855853 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.212 48.8 3 1.1918E-21 22761 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 162.42 145.83 917140000 124740000 112220000 86671000 0 1374700 1081700 0 81872000 66922000 2470800 0 4873000 51718000 0 76706000 0 0 0 97686000 100200000 108600000 0 0 0 13449 289 13113 252697;252698;252699;252700;252701;252702;252703;252704;252705;252706;252707;252708;252709;252710 155011;155012;155013;155014 155014 4 LQIQGRPLSCYR Unmodified 1489.7824 0.78236643 1607 P52129 rnlA mRNA endoribonuclease LS yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 21.528 21.613 3 0.016838 7459 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 47.712 42.535 56059000 6539000 0 0 1165300 1631600 1134100 0 0 0 3231200 2827900 1441900 6665900 6156300 7838100 0 0 0 9251300 0 6906000 0 1270600 0 13450 1607 13114 252711;252712;252713;252714;252715;252716;252717;252718;252719;252720;252721;252722;252723 155015 155015 1 LQISFECAAPEVDETPR Unmodified 1960.92 0.9200417 304 P0A729 yceF Maf-like protein YceF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 1 41.438 39.838 2;3 2.0088E-19 18645 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 199.8 190.01 545570000 94896000 86849000 87455000 0 0 0 33372000 34662000 31152000 0 0 0 33586000 31329000 24125000 0 0 0 28603000 33252000 26289000 0 0 0 13451 304 13115 252724;252725;252726;252727;252728;252729;252730;252731;252732;252733;252734;252735;252736;252737;252738;252739;252740;252741;252742 155016;155017;155018;155019;155020;155021;155022;155023;155024;155025;155026;155027;155028 155026 12 LQLAMPLLPQEVQQQGVSVEK Unmodified 2334.2617 0.26171736 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 2 1 1 2 2 2 1 1 1 2 2 1 2 1 2 51.393 50.134 2;3 9.1927E-22 24372 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 173.71 144.03 219610000 6896100 7368800 6487500 0 4325400 3106200 31554000 9533800 7546200 0 13561000 12214000 17790000 6017000 8672600 0 3530900 0 14438000 27389000 11294000 13325000 5794600 8765800 13452 1365 13116 252743;252744;252745;252746;252747;252748;252749;252750;252751;252752;252753;252754;252755;252756;252757;252758;252759;252760;252761;252762;252763;252764;252765;252766;252767;252768;252769;252770 155029;155030;155031;155032;155033;155034;155035 155033 5 LQLDYIDLYLMHWPVPAIDHYVEAWK Unmodified 3227.6154 0.61541425 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.279 53.801 4 6.6511E-05 26833 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 72.425 70.511 320150000 37918000 30886000 28002000 0 0 0 73830000 59808000 53596000 0 0 0 11058000 6894700 0 0 0 0 10847000 0 7305900 0 0 0 13453 1960 13117 252771;252772;252773;252774;252775;252776;252777;252778;252779;252780 155036;155037;155038 155036 3 LQLIVAIADPTAWIAEGSK Unmodified 1995.1041 0.10407773 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.453 53.98 2 1.1975E-09 26607 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 121.13 119.41 386000000 41675000 44304000 37236000 0 0 0 22997000 24060000 19268000 0 0 0 26274000 27692000 19201000 0 0 0 46875000 42712000 33703000 0 0 0 13454 1348 13118 252781;252782;252783;252784;252785;252786;252787;252788;252789;252790;252791;252792 155039;155040;155041;155042;155043;155044;155045 155039 7 LQLKDEMLK Unmodified 1116.6213 0.62128091 754 P0ACW6 ydcH Uncharacterized protein YdcH yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 21.503 21.738 3 0.16638 8393 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 18.681 4.007 41928000 8628200 6028100 6365700 0 0 0 0 0 0 0 0 0 4923200 6194600 9787800 0 0 0 0 0 0 0 0 0 13455 754 13119 252793;252794;252795;252796;252797;252798 155046 155046 1 LQLKPGMR Unmodified 941.54806 0.54805639 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.93 14.69 2 0.00018967 4682 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 159.19 148.89 402530000 27935000 0 0 856090 917440 993250 90419000 82036000 91924000 6085200 11231000 8521700 13686000 12593000 11479000 0 0 0 13802000 14246000 15802000 0 0 0 13456 522 13120 252799;252800;252801;252802;252803;252804;252805;252806;252807;252808;252809;252810;252811;252812;252813;252814 155047;155048;155049;155050;155051 155049 5 LQLLHDEGR Unmodified 1079.5724 0.57235688 630 P0AB55 yciI Protein YciI yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 2 2 2 2 2 2 16.782 17.583 2;3 1.0067E-05 6519 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.68 147.58 1616200000 176480000 205610000 164890000 0 0 0 100320000 101800000 100160000 0 0 0 103910000 102180000 98669000 0 0 0 174480000 146870000 140810000 0 0 0 13457 630 13121 252815;252816;252817;252818;252819;252820;252821;252822;252823;252824;252825;252826;252827;252828;252829;252830;252831;252832 155052;155053;155054;155055;155056 155052 4 LQLQALEALLR Unmodified 1266.766 0.76597131 1965 Q46919 yqcC Uncharacterized protein YqcC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.299 52.851 2 0.00011332 25776 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 117.31 98.872 410980000 29315000 26644000 38177000 0 0 0 25048000 32006000 26687000 0 0 0 33804000 31477000 34220000 0 0 0 48932000 46521000 38149000 0 0 0 13458 1965 13122 252833;252834;252835;252836;252837;252838;252839;252840;252841;252842;252843;252844 155057;155058;155059;155060;155061;155062;155063;155064;155065;155066;155067 155062 11 LQLTDSYQLLEK Unmodified 1449.7715 0.7715102 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.688 39.985 2 1.3672E-11 19594 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.16 163.84 1102700000 307070000 283150000 263910000 789550 612530 0 45700000 41327000 39796000 0 0 0 18322000 19306000 19028000 0 0 0 20964000 19366000 23331000 0 0 0 13459 1160 13123 252845;252846;252847;252848;252849;252850;252851;252852;252853;252854;252855;252856;252857;252858 155068;155069;155070;155071;155072;155073;155074;155075;155076;155077;155078 155073 11 LQLVAVGTK Unmodified 927.57532 0.57531699 435 P0A8I8 rlmH Ribosomal RNA large subunit methyltransferase H yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.234 25.12 2 0.00029763 11201 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.06 83.235 173030000 14462000 16122000 14208000 0 0 0 12430000 10821000 16781000 0 0 0 9647600 10890000 8451400 0 0 0 21877000 18152000 19191000 0 0 0 13460 435 13124 252859;252860;252861;252862;252863;252864;252865;252866;252867;252868;252869;252870 155079;155080;155081;155082;155083;155084;155085 155082 7 LQLVGVGYR Unmodified 1003.5815 0.581465 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.497 30.107 2 3.6544E-08 14350 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 195.98 164.7 3935100000 461050000 503020000 397460000 12375000 10921000 10791000 195560000 173120000 201660000 30488000 21263000 26186000 242230000 230430000 207260000 11681000 11884000 11231000 367780000 348940000 389150000 20813000 22513000 27342000 13461 987 13125 252871;252872;252873;252874;252875;252876;252877;252878;252879;252880;252881;252882;252883;252884;252885;252886;252887;252888;252889;252890;252891;252892;252893;252894 155086;155087;155088;155089;155090;155091;155092;155093;155094;155095;155096;155097;155098;155099;155100;155101;155102;155103;155104;155105;155106;155107;155108;155109 155094 24 LQMELVPER Oxidation (M) 1129.5801 0.58014438 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 3 3 7 7 8 1 1 1 11 8 9 1 1 2 8 8 9 25.343 24.51 2 0.00030391 10112 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 123.21 101.25 1352900000 0 24769000 6015600 3698700 3146200 0 52234000 51553000 48852000 97770000 81653000 87773000 9190000 5985400 2214600 222380000 134280000 149410000 7569200 8049300 15209000 146670000 99892000 94553000 13462 463 13126 252895;252896;252897;252898;252899;252900;252901;252902;252903;252904;252905;252906;252907;252908;252909;252910;252911;252912;252913;252914;252915;252916;252917;252918;252919;252920;252921;252922;252923;252924;252925;252926;252927;252928;252929;252930;252931;252932;252933;252934;252935;252936;252937;252938;252939;252940;252941;252942;252943;252944;252945;252946;252947;252948;252949;252950;252951;252952;252953;252954;252955;252956;252957;252958;252959;252960;252961;252962;252963;252964;252965;252966;252967;252968;252969;252970;252971;252972;252973;252974;252975;252976;252977;252978;252979;252980;252981;252982;252983;252984;252985;252986;252987;252988;252989 155110;155111;155112;155113;155114;155115;155116;155117;155118;155119;155120;155121;155122;155123;155124;155125;155126;155127;155128;155129;155130;155131;155132;155133;155134;155135;155136;155137;155138;155139;155140;155141;155142;155143;155144;155145;155146;155147;155148;155149;155150;155151;155152;155153;155154;155155;155156;155157;155158;155159;155160;155161;155162;155163;155164;155165;155166;155167;155168;155169;155170;155171;155172;155173;155174;155175;155176;155177;155178;155179;155180;155181;155182;155183;155184;155185;155186;155187 155133 257 73 LQMELVPER Unmodified 1113.5852 0.58522975 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 1 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 32.201 30.839 2;3 1.1634E-07 10702 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 180.45 127.81 36189000000 377230000 332850000 328470000 10739000 11946000 8620500 222600000 254840000 236100000 2154500000 2100000000 2010600000 297130000 275860000 254340000 6578800000 6172700000 6808000000 351900000 332920000 351620000 2240300000 2212300000 2264000000 13463 463 13126 252990;252991;252992;252993;252994;252995;252996;252997;252998;252999;253000;253001;253002;253003;253004;253005;253006;253007;253008;253009;253010;253011;253012;253013;253014;253015;253016;253017;253018;253019;253020;253021;253022;253023;253024;253025;253026;253027;253028;253029 155188;155189;155190;155191;155192;155193;155194;155195;155196;155197;155198;155199;155200;155201;155202;155203;155204;155205;155206;155207;155208;155209;155210;155211;155212;155213;155214;155215;155216;155217;155218;155219;155220;155221;155222;155223;155224;155225;155226;155227;155228;155229;155230;155231 155188 44 LQMQLIIAAPENISPEK Unmodified 1894.0234 0.023384564 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 48.628 47.236 2 1.0457E-08 23459 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 157.56 151.61 134390000 0 0 0 570190 0 0 14561000 13063000 12959000 0 0 0 11118000 10554000 9319300 0 0 0 18959000 19105000 16508000 2425000 2192300 3057400 13464 1197 13127 253030;253031;253032;253033;253034;253035;253036;253037;253038;253039;253040;253041;253042 155232;155233;155234;155235;155236;155237;155238;155239 155232 8 LQMQQLQQNNIVYFDLDKYDIR Unmodified 2784.3905 0.3904997 481 P0A912 pal Peptidoglycan-associated lipoprotein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 49.948 48.515 3 0.040077 19245 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 38.583 31.784 148750000 31143000 29891000 0 0 3720700 0 0 0 0 9344200 3609300 0 0 0 0 0 0 0 0 55158000 0 5110100 4471000 6304000 13465 481 13128 253043;253044;253045;253046;253047;253048;253049;253050;253051 155240 155240 1 LQNQLQR Unmodified 898.49846 0.49846366 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.782 12.457 2 0.00027992 3366 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159.75 153.3 1337400000 841680000 0 0 0 0 0 85282000 85297000 83778000 1140200 1343000 1260900 64967000 53621000 60148000 0 0 0 28866000 0 30048000 0 0 0 13466 1087 13129 253052;253053;253054;253055;253056;253057;253058;253059;253060;253061;253062;253063 155241;155242;155243;155244;155245 155243 5 LQPDEDGIGATLQPA Unmodified 1523.7468 0.74675201 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 40.603 38.865 2 0.0045423 18253 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 62.466 43.335 167770000 9390800 9251900 11241000 544130 804680 0 26748000 24305000 20813000 0 0 4327000 13934000 13627000 15588000 0 0 0 17198000 0 0 0 0 0 13467 1916 13130 253064;253065;253066;253067;253068;253069;253070;253071;253072;253073;253074;253075;253076 155246;155247;155248;155249;155250 155249 5 LQPDEGVDIQVLNK Unmodified 1566.8253 0.82533668 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 35.875 34.307 2;3 1.8967E-08 16667 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 152.54 144.5 1820700000 158570000 143590000 144420000 0 0 0 182040000 166560000 156690000 0 0 0 142570000 125120000 126690000 0 0 0 146140000 163780000 164480000 0 0 0 13468 702 13131 253077;253078;253079;253080;253081;253082;253083;253084;253085;253086;253087;253088;253089;253090;253091;253092;253093;253094;253095;253096;253097;253098;253099 155251;155252;155253;155254;155255;155256;155257;155258;155259;155260;155261;155262;155263 155253 13 LQPVCGR Unmodified 828.42761 0.4276069 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.181 12.869 2 0.014935 3368 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 82.263 63.308 244000000 0 0 0 0 0 0 0 44816000 0 0 0 0 34356000 29967000 29671000 0 0 0 49532000 0 0 19076000 18035000 18549000 13469 1192 13132 253100;253101;253102;253103;253104;253105;253106;253107;253108 155264;155265;155266 155266 3 LQQAEQR Unmodified 871.45118 0.45117911 429 P0A8G9 xseB Exodeoxyribonuclease 7 small subunit yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 5.2432 6.2163 2 0.0033765 1145 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 108.24 53.713 14847000 0 0 0 0 0 0 0 0 0 0 0 0 0 6542800 7915200 0 0 0 0 0 389110 0 0 0 13470 429 13133 253109;253110;253111 155267 155267 1 LQQAGIDVSHGLMMSEAEQLNK Unmodified 2398.1621 0.16207966 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.769 37.095 3 4.491E-10 17196 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 115.42 111.47 368800000 39463000 30736000 31471000 0 0 0 20142000 25666000 21244000 0 0 0 32492000 24913000 30365000 0 0 0 37535000 39864000 34904000 0 0 0 13471 1262 13134 253112;253113;253114;253115;253116;253117;253118;253119;253120;253121;253122;253123 155268;155269;155270 155270 3 LQQAVSK Unmodified 772.4443 0.44430282 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 10.335 11.075 2 0.0079027 2534 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 89.369 54.264 478440000 0 176330000 0 0 0 0 97065000 93285000 111760000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13472 1258 13135 253124;253125;253126;253127 155271 155271 1 LQQDPPR Unmodified 852.44537 0.44536545 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.807 11.622 2 0.018546 2830 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.616 64.203 346910000 20413000 20443000 22655000 0 0 0 22049000 20828000 20284000 0 0 0 29153000 27139000 24530000 0 0 0 45504000 47228000 46682000 0 0 0 13473 1564 13136 253128;253129;253130;253131;253132;253133;253134;253135;253136;253137;253138;253139 155272 155272 1 LQQESWFVGTSNYDLAR Unmodified 2012.9592 0.9592044 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 45.093 43.479 2 1.8727E-24 21056 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 217.21 199.54 53846000 6825500 0 0 0 0 0 8185900 6444900 4883600 0 0 0 0 7119900 0 0 0 0 10371000 0 10015000 0 0 0 13474 1148 13137 253140;253141;253142;253143;253144;253145;253146 155273;155274;155275;155276;155277 155275 5 LQQIEEETGLTIEQVK Unmodified 1856.9731 0.97312313 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 2 1 2 1 1 1 2 2 2 35 38 39 2 2 1 1 1 1 41.502 41.233 2;3 2.8231E-24 16984 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 251.3 231.66 4778700000 35113000 24901000 21380000 0 704000 0 61912000 35886000 59250000 3767300 3804200 3768000 43407000 40989000 38949000 1754500000 1229100000 1251700000 68989000 56079000 34689000 3577800 3324700 2922100 13475 36 13138 253147;253148;253149;253150;253151;253152;253153;253154;253155;253156;253157;253158;253159;253160;253161;253162;253163;253164;253165;253166;253167;253168;253169;253170;253171;253172;253173;253174;253175;253176;253177;253178;253179;253180;253181;253182;253183;253184;253185;253186;253187;253188;253189;253190;253191;253192;253193;253194;253195;253196;253197;253198;253199;253200;253201;253202;253203;253204;253205;253206;253207;253208;253209;253210;253211;253212;253213;253214;253215;253216;253217;253218;253219;253220;253221;253222;253223;253224;253225;253226;253227;253228;253229;253230;253231;253232;253233;253234;253235;253236;253237;253238;253239;253240;253241;253242;253243;253244;253245;253246;253247;253248;253249;253250;253251;253252;253253;253254;253255;253256;253257;253258;253259;253260;253261;253262;253263;253264;253265;253266;253267;253268;253269;253270;253271;253272;253273;253274;253275;253276;253277;253278;253279;253280;253281;253282;253283;253284;253285 155278;155279;155280;155281;155282;155283;155284;155285;155286;155287;155288;155289;155290;155291;155292;155293;155294;155295;155296;155297;155298;155299;155300;155301;155302;155303;155304;155305;155306;155307;155308;155309;155310;155311;155312;155313;155314;155315;155316;155317;155318;155319;155320;155321;155322;155323;155324;155325;155326;155327;155328;155329;155330;155331;155332;155333;155334;155335;155336;155337;155338;155339;155340;155341;155342;155343;155344;155345;155346;155347;155348;155349;155350;155351;155352;155353;155354;155355;155356;155357;155358;155359;155360;155361;155362;155363;155364;155365;155366;155367;155368;155369;155370;155371;155372;155373;155374;155375;155376;155377;155378;155379;155380;155381;155382;155383;155384;155385;155386;155387;155388;155389;155390;155391;155392;155393;155394;155395;155396;155397;155398;155399;155400;155401;155402;155403;155404;155405;155406;155407;155408;155409 155393 115 LQQIEEETGLTIEQVKDINR Unmodified 2355.2282 0.22816862 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 6 5 5 1 1 36.617 36.28 2;3;4 1.3255E-67 12314 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 346.63 331.46 892560000 0 0 0 0 0 0 0 0 0 1566600 0 0 0 0 0 308440000 291350000 288690000 0 0 0 1468600 1040000 0 13476 36 13139 253286;253287;253288;253289;253290;253291;253292;253293;253294;253295;253296;253297;253298;253299;253300;253301;253302;253303;253304 155410;155411;155412;155413;155414;155415;155416;155417;155418;155419;155420;155421 155419 12 LQQIEEETGLTIEQVKDINRR Unmodified 2511.3293 0.32927965 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 5 6 7 1 34.196 33.806 2;4 1.9898E-63 11142 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 287.65 284.08 4470700000 0 0 0 0 0 0 0 0 0 4997300 6073300 0 0 0 0 1085300000 1723900000 1645000000 0 0 0 0 5541600 0 13477 36 13140 253305;253306;253307;253308;253309;253310;253311;253312;253313;253314;253315;253316;253317;253318;253319;253320;253321;253322;253323;253324;253325;253326 155422;155423;155424;155425;155426;155427;155428;155429;155430;155431;155432;155433;155434;155435;155436;155437;155438;155439;155440 155422 18 LQQLGGGEAIPLEGR Unmodified 1536.826 0.82600539 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.482 32.042 2 1.3043E-12 15613 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 179.35 173.75 758570000 67962000 70395000 50960000 0 0 0 60656000 61155000 54616000 0 0 0 51608000 48080000 44372000 0 0 0 91534000 72818000 84408000 0 0 0 13478 1650 13141 253327;253328;253329;253330;253331;253332;253333;253334;253335;253336;253337;253338 155441;155442;155443;155444;155445;155446;155447;155448;155449;155450 155441 10 LQQPDIVETLITLPETQLK Unmodified 2178.2148 0.21475039 1750 P69828 gatA Galactitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 1 2 2 2 2 2 2 2 55.093 53.626 2;3 1.9251E-17 26250 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 168.1 163.39 4762900000 396750000 419480000 409430000 4382700 12694000 5183500 510890000 435790000 437470000 14066000 4580400 10652000 348250000 386240000 364550000 0 0 0 313270000 358200000 331060000 0 0 0 13479 1750 13142 253339;253340;253341;253342;253343;253344;253345;253346;253347;253348;253349;253350;253351;253352;253353;253354;253355;253356;253357;253358;253359;253360;253361;253362;253363;253364;253365;253366;253367;253368;253369;253370;253371 155451;155452;155453;155454;155455;155456;155457;155458;155459;155460;155461;155462;155463;155464;155465;155466;155467;155468;155469 155455 19 LQQVAGR Unmodified 770.43989 0.43988615 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 2 2 2 2 2 2 1 1 1 1 2 1 2 2 2 2 12.173 12.66 2 0.0022284 2917 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 116 67.756 6360700000 30224000 28473000 25470000 1665900 1831900 0 37990000 49142000 45027000 600920000 602900000 593750000 27398000 27355000 28231000 1010800000 874720000 954350000 46904000 0 43441000 461730000 438430000 429960000 13480 1197 13143 253372;253373;253374;253375;253376;253377;253378;253379;253380;253381;253382;253383;253384;253385;253386;253387;253388;253389;253390;253391;253392;253393;253394;253395;253396;253397;253398;253399;253400;253401;253402;253403;253404;253405;253406 155470;155471;155472;155473;155474;155475;155476;155477;155478;155479;155480;155481;155482;155483;155484;155485;155486;155487;155488;155489;155490 155483 20 LQQVGDK Unmodified 786.42357 0.42356738 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 10.953 11.377 2 0.0021977 2242 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 116.54 21.873 459890000 0 0 0 0 0 0 224810000 208310000 0 0 10670000 12143000 0 0 0 0 0 0 0 0 0 0 0 3965300 13481 936 13144 253407;253408;253409;253410;253411 155491;155492 155492 2 LQQVGDKPR Unmodified 1039.5774 0.57744226 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.699 11.218 2 1.2375E-05 2174 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 170.66 126.22 2399900000 57686000 52118000 51325000 0 0 0 31250000 30189000 23256000 527910000 458190000 429640000 53501000 63132000 66816000 42676000 20537000 25355000 55797000 45849000 43598000 94010000 89053000 137970000 13482 936 13145 253412;253413;253414;253415;253416;253417;253418;253419;253420;253421;253422;253423;253424;253425;253426;253427;253428;253429;253430;253431;253432 155493;155494;155495;155496;155497;155498;155499;155500;155501;155502;155503;155504;155505 155498 13 LQQVGDKPRPK Unmodified 1264.7252 0.72516913 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 5 6 2 2 2 2 2 2 2 2 2 4 2 3 9.9498 10.499 1;2;3 1.1534E-25 1958 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 249.03 234.35 40465000000 196140000 187580000 201160000 8335500 17149000 8322100 142380000 94686000 124310000 11896000000 6871100000 5824500000 273410000 236580000 201320000 1307000000 940790000 1104300000 265640000 278260000 274020000 3705000000 3324300000 2982700000 13483 936 13146 253433;253434;253435;253436;253437;253438;253439;253440;253441;253442;253443;253444;253445;253446;253447;253448;253449;253450;253451;253452;253453;253454;253455;253456;253457;253458;253459;253460;253461;253462;253463;253464;253465;253466;253467;253468;253469;253470;253471;253472;253473;253474;253475;253476;253477;253478;253479;253480;253481;253482;253483;253484;253485;253486;253487;253488;253489;253490;253491 155506;155507;155508;155509;155510;155511;155512;155513;155514;155515;155516;155517;155518;155519;155520;155521;155522;155523;155524;155525;155526;155527;155528;155529;155530;155531;155532;155533;155534;155535;155536;155537;155538;155539;155540;155541;155542;155543;155544;155545;155546;155547;155548;155549;155550;155551;155552;155553;155554;155555;155556 155533 51 LQSGDEYFR Unmodified 1113.5091 0.50908792 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.424 21.751 2 2.5811E-08 8268 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 198.07 166.78 1484200000 93308000 99401000 90345000 0 0 0 111420000 125520000 0 0 0 0 164770000 150110000 128730000 0 0 0 158530000 183250000 178860000 0 0 0 13484 1073 13147 253492;253493;253494;253495;253496;253497;253498;253499;253500;253501;253502 155557;155558;155559;155560;155561;155562;155563;155564;155565;155566 155566 10 LQSHPLK Unmodified 821.47594 0.4759373 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 10.252 11.078 2 0.011149 2474 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.086 49.499 17504000 0 0 0 0 0 0 1868300 4967900 3201600 0 0 0 0 3974100 3491600 0 0 0 0 0 0 0 0 0 13485 389 13148 253503;253504;253505;253506;253507 155567 155567 1 LQTDYLDLYQVHWPQR Unmodified 2074.0272 0.027224389 556 P0A9T4 tas Protein tas yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 46.981 45.583 3 1.947E-06 21458 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 76.548 75.121 119080000 11316000 12178000 9875900 0 0 0 12999000 14281000 9322800 0 0 0 9797900 8652800 8519000 0 0 0 10722000 0 11413000 0 0 0 13486 556 13149 253508;253509;253510;253511;253512;253513;253514;253515;253516;253517;253518 155568;155569 155569 2 LQTDYLDLYQVHWPQRPTNCFGK Unmodified 2878.3861 0.38608302 556 P0A9T4 tas Protein tas yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.866 42.351 3;4 2.4234E-15 20493 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 148.04 141.88 1208200000 113060000 114220000 100920000 0 0 0 134530000 109850000 109830000 0 0 0 84490000 63990000 85585000 0 0 0 99863000 101010000 90806000 0 0 0 13487 556 13150 253519;253520;253521;253522;253523;253524;253525;253526;253527;253528;253529;253530;253531;253532;253533;253534;253535;253536;253537;253538;253539;253540;253541;253542 155570;155571;155572;155573;155574;155575;155576;155577;155578;155579;155580;155581;155582;155583;155584;155585;155586;155587;155588;155589;155590;155591;155592 155586 23 LQTETTNK Unmodified 933.47673 0.47672516 1175 P21338 rna Ribonuclease I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 9.4396 10.18 2 0.045716 2191 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.682 54.227 15144000 4396300 2804300 1873700 0 0 26526 0 0 0 0 0 0 0 0 0 0 0 0 1783100 1855300 1473400 0 931270 0 13488 1175 13151 253543;253544;253545;253546;253547;253548;253549;253550 155593;155594;155595;155596 155595 4 LQTHPFLGPK Unmodified 1136.6342 0.63422886 142 P06992 rsmA Ribosomal RNA small subunit methyltransferase A yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 17.61 18.248 2;3 0.00037608 6628 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.71 110.56 346380000 44364000 37281000 49074000 1235100 1078000 1109300 20004000 18721000 19431000 0 2443500 2028000 23642000 19867000 19454000 0 0 0 27915000 26909000 31821000 0 0 0 13489 142 13152 253551;253552;253553;253554;253555;253556;253557;253558;253559;253560;253561;253562;253563;253564;253565;253566;253567;253568;253569;253570;253571;253572;253573;253574;253575;253576;253577;253578;253579 155597;155598;155599;155600 155600 4 LQTIIER Unmodified 871.51272 0.51271674 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.363 19.796 2 9.6304E-05 7091 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 173.93 113.57 2081700000 184130000 189620000 161230000 0 1365400 0 286770000 288190000 296810000 2970300 751710 0 107740000 107190000 96203000 0 0 0 120780000 115490000 122430000 0 0 0 13490 468 13153 253580;253581;253582;253583;253584;253585;253586;253587;253588;253589;253590;253591;253592;253593;253594 155601;155602;155603;155604;155605;155606;155607;155608;155609;155610;155611;155612;155613;155614 155614 14 LQTLGLTQGTVVTISAEGEDEQK Unmodified 2416.2333 0.23331358 568 P0AA04 ptsH Phosphocarrier protein HPr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 13 13 10 2 1 1 11 14 12 13 12 14 11 12 11 47.403 45.944 2;3 1.92E-118 20402 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 373.71 368.24 3671400000 214040000 173730000 155670000 7181400 1665600 2706900 367480000 396130000 344650000 0 0 0 347300000 293890000 371070000 0 0 0 310900000 356660000 328360000 0 0 0 13491 568 13154 253595;253596;253597;253598;253599;253600;253601;253602;253603;253604;253605;253606;253607;253608;253609;253610;253611;253612;253613;253614;253615;253616;253617;253618;253619;253620;253621;253622;253623;253624;253625;253626;253627;253628;253629;253630;253631;253632;253633;253634;253635;253636;253637;253638;253639;253640;253641;253642;253643;253644;253645;253646;253647;253648;253649;253650;253651;253652;253653;253654;253655;253656;253657;253658;253659;253660;253661;253662;253663;253664;253665;253666;253667;253668;253669;253670;253671;253672;253673;253674;253675;253676;253677;253678;253679;253680;253681;253682;253683;253684;253685;253686;253687;253688;253689;253690;253691;253692;253693;253694;253695;253696;253697;253698;253699;253700;253701;253702;253703;253704;253705;253706;253707;253708;253709;253710;253711;253712;253713;253714;253715;253716;253717;253718;253719;253720;253721;253722;253723;253724;253725;253726;253727;253728;253729;253730;253731;253732;253733;253734;253735;253736;253737;253738;253739;253740;253741;253742;253743;253744 155615;155616;155617;155618;155619;155620;155621;155622;155623;155624;155625;155626;155627;155628;155629;155630;155631;155632;155633;155634;155635;155636;155637;155638;155639;155640;155641;155642;155643;155644;155645;155646;155647;155648;155649;155650;155651;155652;155653;155654;155655;155656;155657;155658;155659;155660;155661;155662;155663;155664;155665;155666;155667;155668;155669;155670;155671;155672;155673;155674;155675;155676;155677;155678;155679;155680;155681;155682;155683;155684;155685;155686;155687;155688;155689;155690;155691;155692;155693;155694;155695;155696;155697;155698;155699;155700;155701;155702;155703;155704;155705;155706;155707;155708;155709;155710;155711;155712;155713;155714;155715;155716;155717;155718;155719;155720;155721;155722;155723;155724;155725;155726;155727;155728;155729;155730;155731;155732;155733;155734;155735;155736;155737;155738;155739;155740;155741;155742;155743;155744;155745;155746;155747;155748;155749;155750;155751;155752;155753;155754;155755;155756;155757;155758 155615 129 LQTLGLTQGTVVTISAEGEDEQKAVEHLVK Unmodified 3192.6878 0.68778715 568 P0AA04 ptsH Phosphocarrier protein HPr yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.857 43.318 4 1.9805E-23 21485 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 171.31 169.6 983790000 43052000 37751000 46378000 8833200 6941900 9463600 126730000 101330000 69787000 4968900 6781500 5040400 76316000 56187000 62956000 8737200 12212000 0 88234000 104960000 93695000 5503400 3839300 4089300 13492 568 13155 253745;253746;253747;253748;253749;253750;253751;253752;253753;253754;253755;253756;253757;253758;253759;253760;253761;253762;253763;253764;253765;253766;253767 155759;155760;155761;155762;155763;155764;155765;155766;155767;155768 155760 10 LQTLMDVGLTYIR Unmodified 1521.8225 0.82249991 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 51.697 50.762 2 5.7156E-06 19600 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 149.23 145.34 68612000 0 0 9209500 0 0 0 0 0 0 1693100 1135600 1960600 0 0 0 13745000 6875100 6798200 9643500 8740300 8810600 0 0 0 13493 222 13156 253768;253769;253770;253771;253772;253773;253774;253775;253776;253777 155769;155770;155771;155772 155769 3 LQTMVSHFTIDPSR Unmodified 1630.8137 0.81372614 1512 P39177 uspG Universal stress protein G yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 31.804 30.278 2;3 1.7409E-26 13559 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 235.31 225.88 2574600000 72239000 68168000 53402000 59368000 53229000 53748000 464930000 421440000 411970000 62390000 51917000 51799000 140100000 122920000 140460000 10567000 17454000 0 78657000 75991000 79337000 28384000 26820000 29276000 13494 1512 13157 253778;253779;253780;253781;253782;253783;253784;253785;253786;253787;253788;253789;253790;253791;253792;253793;253794;253795;253796;253797;253798;253799;253800;253801;253802;253803;253804;253805;253806;253807;253808;253809;253810;253811;253812;253813;253814;253815;253816;253817;253818;253819;253820;253821;253822;253823 155773;155774;155775;155776;155777;155778;155779;155780;155781;155782;155783;155784;155785;155786;155787;155788;155789;155790;155791;155792;155793;155794;155795;155796;155797;155798;155799;155800;155801;155802;155803;155804;155805;155806;155807;155808;155809 155808 36 LQTVLFQQQLGTLR Unmodified 1643.9359 0.93589019 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 44.582 42.97 2;3 4.0715E-45 21299 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 283.52 268.84 4374100000 312560000 323030000 232710000 10957000 7224600 9876800 407170000 405470000 383340000 27098000 24978000 25763000 314110000 291660000 286460000 8181400 0 6280200 417570000 432040000 407780000 12866000 12362000 14669000 13495 62 13158 253824;253825;253826;253827;253828;253829;253830;253831;253832;253833;253834;253835;253836;253837;253838;253839;253840;253841;253842;253843;253844;253845;253846;253847;253848;253849;253850;253851;253852;253853;253854;253855;253856;253857;253858;253859;253860;253861;253862;253863;253864;253865;253866 155810;155811;155812;155813;155814;155815;155816;155817;155818;155819;155820;155821;155822;155823;155824;155825;155826;155827;155828;155829;155830;155831;155832;155833;155834;155835;155836;155837;155838;155839;155840;155841;155842;155843;155844;155845;155846;155847;155848;155849 155821 40 LQVAFQGQGIK Unmodified 1187.6663 0.66625727 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 27.823 26.658 2 0.00084934 12556 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.743 79.541 111920000 14422000 11924000 10008000 0 0 0 9791100 10479000 8870300 0 0 0 7087600 0 6958600 0 0 0 11940000 11328000 9109600 0 0 0 13496 80 13159 253867;253868;253869;253870;253871;253872;253873;253874;253875;253876;253877 155850;155851 155850 2 LQVDAGGTATNVTLK Unmodified 1486.7991 0.79912193 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.327 26.349 2 2.6427E-11 11383 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 160.15 150.74 461170000 22273000 22574000 21601000 0 0 0 7081000 5955300 8701300 0 0 0 93089000 89466000 89806000 0 995450 1048200 32324000 36381000 29874000 0 0 0 13497 1513 13160 253878;253879;253880;253881;253882;253883;253884;253885;253886;253887;253888;253889;253890;253891 155852;155853;155854;155855;155856;155857;155858;155859;155860 155860 9 LQVDGGLK Unmodified 828.47052 0.47051757 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.395 18.079 2 0.0021725 6665 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 102.71 35.72 696060000 96683000 96762000 87907000 1037000 0 0 86176000 75684000 66623000 0 0 0 27222000 34024000 28832000 0 0 0 30349000 30355000 34411000 0 0 0 13498 218 13161 253892;253893;253894;253895;253896;253897;253898;253899;253900;253901;253902;253903;253904 155861;155862;155863;155864;155865;155866;155867 155862 7 LQVEAIKR Unmodified 955.58147 0.581465 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 13.328 14.27 2 0.00014442 4522 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 158.12 95.402 438230000 197970000 180810000 0 0 2862900 3108300 0 0 0 0 0 0 0 4334800 3870300 0 0 0 13082000 18580000 13607000 0 0 0 13499 339 13162 253905;253906;253907;253908;253909;253910;253911;253912;253913;253914 155868;155869;155870;155871;155872;155873;155874 155873 7 LQVEQIIAVSNETHIYR Unmodified 2012.0691 0.069089203 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.729 39.047 3 1.1851E-10 19039 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.05 136.13 269740000 5405900 6985500 5702700 1772700 2064100 2013400 14177000 14043000 14905000 25172000 18390000 20271000 15597000 12462000 13416000 0 3330800 3462700 23293000 23302000 21508000 8808400 6961300 6695900 13500 1781 13163 253915;253916;253917;253918;253919;253920;253921;253922;253923;253924;253925;253926;253927;253928;253929;253930;253931;253932;253933;253934;253935;253936;253937 155875;155876;155877;155878;155879;155880;155881;155882;155883;155884;155885;155886 155882 12 LQVGDLDNR Unmodified 1028.5251 0.52507234 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.211 21.858 2 0.00021821 7290 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 124.98 67.424 54399000 0 0 0 0 0 0 8838500 7078500 8455700 7086200 6875000 5078000 0 0 0 2116400 1596200 1715600 0 0 0 1893400 1781700 1884000 13501 477 13164 253938;253939;253940;253941;253942;253943;253944;253945;253946;253947;253948;253949 155887;155888;155889;155890 155889 4 LQVPALDGER Unmodified 1096.5877 0.58767259 281 P0A6U5 rsmG Ribosomal RNA small subunit methyltransferase G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 29.895 28.497 2 0.00031558 13201 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 126.41 46.815 127330000 2030800 9306200 7668900 0 0 0 15944000 13414000 12559000 0 0 641310 8776800 8291600 10012000 0 0 0 13493000 11120000 14071000 0 0 0 13502 281 13165 253950;253951;253952;253953;253954;253955;253956;253957;253958;253959;253960;253961;253962 155891;155892;155893;155894;155895;155896;155897 155894 7 LQVVTLLGSLR Unmodified 1197.7445 0.74450759 1012 P0AGE6 chrR Chromate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.013 48.569 2 1.4417E-19 23963 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 228.05 176.2 2664400000 219470000 177600000 168340000 0 0 0 364670000 329480000 318570000 1792000 1353800 0 207130000 145930000 143560000 0 0 0 194650000 192080000 199810000 0 0 0 13503 1012 13166 253963;253964;253965;253966;253967;253968;253969;253970;253971;253972;253973;253974;253975;253976 155898;155899;155900;155901;155902;155903;155904;155905;155906;155907;155908;155909 155900 12 LQYFFDK Unmodified 959.47527 0.4752686 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 33.91 32.17 2 0.0075651 15701 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.777 60.058 156420000 0 0 1233700 0 0 0 48506000 49616000 42303000 2199600 2183000 0 4727300 3426800 2224900 0 0 0 0 0 0 0 0 0 13504 722 13167 253977;253978;253979;253980;253981;253982;253983;253984;253985 155910;155911;155912 155910 3 LQYGCTWVNTHFMLVSEMPHGGQK Unmodified 2819.2982 0.29819599 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 1 1 1 42 40.069 3;4 2.4519E-15 19438 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146.39 146.39 741990000 283340000 231510000 176330000 0 0 0 21220000 19431000 3654800 2872400 1430400 2206100 0 0 0 0 0 0 0 0 0 0 0 0 13505 1925 13168 253986;253987;253988;253989;253990;253991;253992;253993;253994;253995;253996;253997;253998 155913;155914;155915;155916;155917;155918 155915 6 LQYVNEALKDEHWICGQR Unmodified 2258.0902 0.090235351 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 34.049 32.507 3;4 2.0966E-22 15321 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.18 174 1776200000 264060000 269280000 241510000 0 0 0 153700000 185560000 135600000 0 0 0 89605000 88017000 93177000 0 0 0 75616000 90420000 71040000 5146900 6780700 6705000 13506 510 13169 253999;254000;254001;254002;254003;254004;254005;254006;254007;254008;254009;254010;254011;254012;254013;254014;254015;254016;254017;254018;254019;254020;254021;254022;254023;254024;254025;254026;254027;254028 155919;155920;155921;155922;155923;155924;155925;155926;155927;155928;155929;155930;155931;155932;155933;155934;155935;155936;155937;155938;155939;155940;155941 155935 23 LRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVAR Unmodified 4095.0987 0.098681357 1402 P33012 sbmC DNA gyrase inhibitor yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 55.236 53.825 3 0.001359 19657 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 50.85 49.447 39854000 0 0 0 9549400 8434500 8182300 0 0 3872500 0 0 0 0 3853400 0 0 0 0 5962400 0 0 0 0 0 13507 1402 13170 254029;254030;254031;254032;254033;254034 155942 155942 1 LRDDKQPVWLDEYR Unmodified 1831.9217 0.92169668 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 2 27.002 25.842 3;4 3.5087E-06 9716 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 109.84 105.22 264680000 2447600 3651500 3134800 16056000 16692000 19352000 0 0 0 28115000 25395000 25563000 5448600 0 3906400 8695100 6965600 6656800 0 9709100 12269000 26779000 19637000 24205000 13508 1383 13171 254035;254036;254037;254038;254039;254040;254041;254042;254043;254044;254045;254046;254047;254048;254049;254050;254051;254052;254053;254054;254055;254056;254057;254058;254059;254060;254061;254062;254063;254064;254065;254066 155943;155944;155945;155946;155947;155948 155945 6 LRDDSDGYGPR Unmodified 1249.5687 0.56872807 1436 P34209 ydcF Protein YdcF yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.877 12.679 2 6.8081E-20 3485 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 242.97 223.99 80160000 14471000 13852000 19688000 0 0 0 5087100 8861100 5592900 0 0 0 3596700 2710700 0 0 0 0 6300100 0 0 0 0 0 13509 1436 13172 254067;254068;254069;254070;254071;254072;254073;254074;254075 155949;155950 155950 2 LRDELAK Unmodified 843.48142 0.48141661 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.266 11.977 2 0.0040926 2510 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 113.5 50.352 260460000 28359000 20685000 17602000 0 0 0 0 0 0 0 0 0 17883000 12165000 0 0 0 0 20319000 14533000 0 0 62543000 66375000 13510 1433 13173 254076;254077;254078;254079;254080;254081;254082;254083;254084 155951;155952 155952 2 LRDELNFSIFVDTPLDICLMR Unmodified 2566.2924 0.29236556 425 P0A8F4 udk Uridine kinase yes yes 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 55.177 53.603 3 4.6111E-11 21886 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 132.14 128.48 25571000 0 0 0 0 0 0 0 6178500 0 7755600 9729700 1907200 0 0 0 0 0 0 0 0 0 0 0 0 13511 425 13174 254085;254086;254087;254088 155953 155953 1 LRDELPGVK Unmodified 1025.5869 0.58694431 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.34 17.13 2 0.00055386 5592 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 116.05 83.21 491730000 53705000 51321000 51830000 0 0 0 33281000 35775000 31596000 0 0 0 26347000 32500000 36569000 0 0 0 49562000 43245000 46000000 0 0 0 13512 1634 13175 254089;254090;254091;254092;254093;254094;254095;254096;254097;254098;254099;254100 155954;155955;155956;155957;155958;155959;155960;155961;155962;155963;155964;155965 155965 12 LRDLGGLIVIDFIDMTPVR Unmodified 2142.1871 0.18709585 1183 P21513 rne Ribonuclease E yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 55.288 53.904 3 0.00074062 19863 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 64.2 60.595 15824000 0 0 0 0 6216500 6511000 0 0 0 0 0 3096500 0 0 0 0 0 0 0 0 0 0 0 0 13513 1183 13176 254101;254102;254103 155966;155967 155966 2 LRDLSPLWEMYK Unmodified 1549.7963 0.79628516 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.724 40.092 3 5.2372E-05 19638 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.858 88.907 195250000 15812000 15074000 11242000 5602100 4982800 5096700 9741700 10232000 8554100 3266000 3359900 2464300 6968300 6156800 6363200 16954000 5568800 5357100 11238000 12694000 11943000 5401500 5534800 5643300 13514 228 13177 254104;254105;254106;254107;254108;254109;254110;254111;254112;254113;254114;254115;254116;254117;254118;254119;254120;254121;254122;254123;254124;254125;254126;254127 155968;155969;155970;155971;155972;155973;155974;155975;155976;155977;155978;155979 155978 12 LRDNPECADQEHQAK Unmodified 1809.8064 0.80640893 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 3 1 1 1 1 1 1 1 1 10.491 11.279 2;3 7.0497E-09 2634 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.05 123.39 287840000 74703000 79979000 60024000 0 0 0 9380700 14621000 6482700 0 0 0 11000000 6488400 5754200 0 0 0 11017000 8391000 0 0 0 0 13515 1107 13178 254128;254129;254130;254131;254132;254133;254134;254135;254136;254137;254138;254139;254140;254141;254142 155980;155981;155982;155983;155984 155980 4 LRDQGNTIVVIEHNLDVIK Unmodified 2175.2012 0.20116601 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 2 2 3 1 1 38.422 37.253 3;4 1.0725E-06 12653 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 92.563 89.521 279430000 0 0 7704000 1121300 837360 851770 2851700 0 0 3794100 3367500 3717300 0 0 0 76080000 53491000 121120000 0 0 0 2000100 0 2488400 13516 222 13179 254143;254144;254145;254146;254147;254148;254149;254150;254151;254152;254153;254154;254155;254156;254157;254158;254159 155985;155986;155987;155988;155989;155990;155991;155992 155990 8 LRDQYDLHPVYK Unmodified 1545.794 0.79397698 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 3 3 3 2 2 2 2 3 3 2 2 2 17.825 18.452 2;3;4 0.00047208 6740 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 77.644 76.265 500180000 94528000 88296000 97713000 0 0 0 0 0 0 0 0 0 14505000 17214000 14121000 0 0 0 60026000 56241000 49751000 2980000 2287800 2513200 13517 65 13180 254160;254161;254162;254163;254164;254165;254166;254167;254168;254169;254170;254171;254172;254173;254174;254175;254176;254177;254178;254179;254180;254181;254182;254183;254184;254185;254186;254187;254188 155993;155994;155995;155996;155997;155998;155999;156000 156000 8 LRDTPILTFMNK Unmodified 1447.7857 0.78572048 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 35.775 34.219 2;3 5.3035E-06 16494 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 115.57 102.45 139980000 12718000 10481000 7585200 0 0 0 8952400 8695400 8874600 0 0 0 8645800 10671000 9983800 0 0 0 23023000 16796000 13552000 0 0 0 13518 346 13181 254189;254190;254191;254192;254193;254194;254195;254196;254197;254198;254199;254200;254201 156001;156002;156003;156004;156005;156006;156007;156008;156009;156010 156002 10 LRDTSSSHQR Unmodified 1185.585 0.58504683 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 4.2006 5.1249 2 0.0058853 797 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 73.233 63.839 10531000 0 0 0 0 0 185320 3290800 2752100 2707300 0 0 0 1595800 0 0 0 0 0 0 0 0 0 0 0 13519 320 13182 254202;254203;254204;254205;254206 156011;156012;156013 156013 3 LRDVVIGMGACTDSK Unmodified 1620.7964 0.79636152 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 23.735 22.939 2;3 9.1378E-36 9929 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 266.35 261.04 1110400000 22364000 21262000 22201000 0 480960 0 255080000 235950000 221710000 0 0 0 24204000 15824000 15825000 0 0 0 87452000 88634000 99365000 0 0 0 13520 669 13183 254207;254208;254209;254210;254211;254212;254213;254214;254215;254216;254217;254218;254219;254220;254221;254222;254223;254224;254225;254226;254227;254228;254229;254230;254231 156014;156015;156016;156017;156018;156019;156020;156021;156022;156023;156024;156025;156026;156027;156028;156029;156030;156031;156032;156033;156034;156035;156036;156037;156038;156039;156040 156031 27 LRDWGVSR Unmodified 987.52501 0.52501276 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 14.723 15.5 2 1.7506E-06 4882 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 195.88 163.27 821950000 53953000 45179000 49151000 642970 0 0 54280000 70283000 74562000 0 0 0 65899000 68121000 63176000 0 0 0 96560000 91963000 88181000 0 0 0 13521 170 13184 254232;254233;254234;254235;254236;254237;254238;254239;254240;254241;254242;254243;254244 156041;156042;156043;156044;156045;156046;156047;156048;156049;156050;156051;156052 156050 12 LREEFGVYAVASGR Unmodified 1552.7998 0.79979063 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 28.314 27.067 2;3 1.1461E-34 12771 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 254.4 239.72 455280000 50847000 43992000 38740000 0 0 0 45820000 47807000 39196000 0 0 0 24213000 24627000 26406000 0 0 0 40452000 39328000 33847000 0 0 0 13522 31 13185 254245;254246;254247;254248;254249;254250;254251;254252;254253;254254;254255;254256;254257;254258;254259;254260;254261;254262;254263;254264;254265;254266;254267;254268 156053;156054;156055;156056;156057;156058;156059;156060;156061;156062;156063;156064;156065;156066;156067;156068;156069;156070;156071;156072;156073 156055 21 LREEIAEQHR Unmodified 1279.6633 0.66329715 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 4 3 4 3 2 1 1 4 3 3 11.004 11.767 1;2;3 2.7079E-12 2872 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 243.65 229.88 34378000000 1633300000 1657500000 1699000000 20531000 20019000 14591000 4377300000 4150300000 3940600000 0 0 0 3443600000 3642900000 3120200000 42247000 28777000 27153000 2096400000 2025300000 2438700000 0 0 0 13523 212 13186 254269;254270;254271;254272;254273;254274;254275;254276;254277;254278;254279;254280;254281;254282;254283;254284;254285;254286;254287;254288;254289;254290;254291;254292;254293;254294;254295;254296;254297;254298;254299;254300;254301;254302;254303;254304;254305;254306;254307;254308;254309;254310;254311;254312;254313;254314 156074;156075;156076;156077;156078;156079;156080;156081;156082;156083;156084;156085;156086;156087;156088;156089;156090;156091;156092;156093;156094;156095;156096;156097;156098;156099;156100;156101;156102;156103;156104;156105;156106;156107 156078 32 LREELAEHR Unmodified 1151.6047 0.60471964 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 10.946 11.843 2 0.028283 2771 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 64.04 52.327 23147000 0 0 0 0 0 0 0 0 3602200 0 0 0 3967600 6648300 3915400 0 0 0 3050700 1962500 0 0 0 0 13524 1559 13187 254315;254316;254317;254318;254319;254320 156108;156109;156110 156110 3 LREELDFLK Unmodified 1161.6394 0.63937381 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 1 1 2 2 2 1 2 2 2 1 2 2 3 3 2 2 2 2 30.968 29.674 2;3 2.7352E-05 14392 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 158.76 106.04 4449300000 300100000 256760000 223630000 1373400 1390800 0 333040000 332780000 329770000 721530 0 0 387270000 365530000 404040000 2669400 9812200 12329000 492570000 501730000 479250000 4908100 4373600 5245500 13525 288 13188 254321;254322;254323;254324;254325;254326;254327;254328;254329;254330;254331;254332;254333;254334;254335;254336;254337;254338;254339;254340;254341;254342;254343;254344;254345;254346;254347;254348;254349;254350;254351;254352;254353;254354;254355;254356;254357;254358;254359;254360;254361 156111;156112;156113;156114;156115;156116;156117;156118;156119;156120;156121;156122;156123;156124;156125;156126;156127;156128;156129;156130;156131;156132;156133;156134;156135 156113 25 LREFIQR Unmodified 960.5505 0.55049923 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 2 2 1 1 1 3 2 2 15.242 15.585 1;2 0.00028383 4070 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 169.37 148.82 7180500000 0 0 0 4991400 4621300 5794500 2360800 0 0 4461700 5643600 752190000 0 0 2825800 2202100000 696040000 683920000 4234400 3947100 3233700 905180000 1001500000 897470000 13526 463 13189 254362;254363;254364;254365;254366;254367;254368;254369;254370;254371;254372;254373;254374;254375;254376;254377;254378;254379;254380;254381;254382;254383;254384;254385;254386 156136;156137;156138;156139;156140;156141;156142;156143;156144;156145;156146;156147;156148 156141 12 LREGNSAGK Unmodified 930.48829 0.4882929 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 7.9454 8.3621 2 0.0044877 772 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 84.568 64.047 32383000 0 0 0 2864600 2924000 2513200 0 0 0 1090600 1123600 1242400 0 2364200 0 1640500 775690 813520 0 0 0 4478700 5175300 5376700 13527 938 13190 254387;254388;254389;254390;254391;254392;254393;254394;254395;254396;254397;254398;254399 156149;156150;156151;156152;156153;156154;156155 156155 7 LREILQTQGLNIEALFR Unmodified 2013.1371 0.13710919 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 50.433 49.877 2;3 3.4867E-50 18276 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 325.46 325.46 688650000 0 0 0 0 0 0 3605300 4283300 0 0 6554700 4810000 0 0 0 184350000 157140000 327910000 0 0 0 0 0 0 13528 1089 13191 254400;254401;254402;254403;254404;254405;254406;254407;254408;254409 156156;156157;156158;156159;156160;156161;156162 156160 7 LREILQTQGLNIEALFRE Unmodified 2142.1797 0.17970229 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 2 1 7 8 6 1 1 1 52.036 51.587 2;3;4 2.0941E-55 19345 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 323.77 321.06 7588900000 0 0 0 7025200 1723900 1284600 0 0 0 37281000 34583000 37976000 0 0 0 1818400000 2408200000 3228300000 0 0 0 4054800 4525000 5538100 13529 1089 13192 254410;254411;254412;254413;254414;254415;254416;254417;254418;254419;254420;254421;254422;254423;254424;254425;254426;254427;254428;254429;254430;254431;254432;254433;254434;254435;254436;254437;254438;254439;254440;254441 156163;156164;156165;156166;156167;156168;156169;156170;156171;156172;156173;156174;156175;156176;156177;156178;156179;156180;156181;156182;156183;156184;156185;156186;156187 156165 21 LRELLTTLNLK Unmodified 1312.8078 0.80783613 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 1 4 5 8 34.096 33.411 2;3 3.0415E-07 11337 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 192.38 150.5 2885000000 0 1368200 0 1879600 2433000 2924900 0 0 0 2051500 2046100 2227900 1249800 0 0 1023200000 838780000 1006900000 0 0 0 0 0 0 13530 1247 13193 254442;254443;254444;254445;254446;254447;254448;254449;254450;254451;254452;254453;254454;254455;254456;254457;254458;254459;254460;254461;254462;254463;254464;254465;254466;254467;254468 156188;156189;156190;156191;156192;156193;156194;156195;156196;156197;156198;156199;156200;156201;156202;156203;156204;156205;156206;156207;156208 156190 19 LRENFAVFLK Unmodified 1235.7026 0.70264277 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 33.532 32.116 3 0.0014358 15300 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.652 71.136 66422000 7750900 10939000 6120900 0 0 0 5669100 5974600 0 0 0 0 5642900 4870100 4052900 0 0 0 3964100 6427800 5009200 0 0 0 13531 1244 13194 254469;254470;254471;254472;254473;254474;254475;254476;254477;254478;254479 156209;156210;156211;156212 156209 4 LREQQEAER Unmodified 1157.5789 0.57889882 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 6.2519 7.0867 2 0.0003118 1655 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.27 95.429 34493000 4223400 4289100 5863700 0 0 0 0 8429900 5511400 0 0 0 2138100 0 2701800 0 0 0 0 0 1335100 0 0 0 13532 1197 13195 254480;254481;254482;254483;254484;254485;254486;254487 156213;156214;156215;156216 156215 4 LREYQDIIR Unmodified 1204.6564 0.65642086 1882 P77173 zipA Cell division protein ZipA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 20.062 20.349 3 0.024558 6761 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 53.751 29.721 41858000 0 0 0 0 0 0 5998900 6992400 7158100 0 0 3839400 5087900 3984400 3628500 0 1983800 0 3184100 0 0 0 0 0 13533 1882 13196 254488;254489;254490;254491;254492;254493;254494;254495;254496;254497 156217;156218 156218 2 LRGDALDHLLIFGPPGLGK Unmodified 1988.1207 0.12073084 387 P0A812 ruvB Holliday junction ATP-dependent DNA helicase RuvB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 1 1 2 1 2 2 2 2 2 2 2 1 2 2 2 2 49.18 47.736 3;4 0.0023262 19416 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 57.745 56.054 138160000 18599000 5707200 7348100 2840500 1189100 3136700 11368000 10835000 10909000 7638100 7869600 8276700 5585900 0 0 0 0 0 11324000 11168000 9747000 4617300 0 0 13534 387 13197 254498;254499;254500;254501;254502;254503;254504;254505;254506;254507;254508;254509;254510;254511;254512;254513;254514;254515;254516;254517;254518;254519;254520;254521;254522;254523;254524;254525;254526;254527 156219;156220 156219 2 LRGEGAICLQTSAK Unmodified 1502.7875 0.78751139 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 16.939 17.684 3 0.015584 6441 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 54.44 49.161 34486000 0 0 0 0 0 0 0 10375000 13272000 0 0 0 0 0 2927600 0 0 0 0 7912000 0 0 0 0 13535 1916 13198 254528;254529;254530;254531 156221;156222;156223 156222 0 LRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIR Unmodified 4153.9936 0.99362394 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 52.881 51.471 3;4 3.913E-38 25590 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 197.63 195.84 2021700000 177410000 156940000 169180000 2098400 0 0 146520000 138950000 118850000 0 0 0 156830000 163650000 169340000 0 0 0 199610000 210370000 211950000 0 0 0 13536 161 13199 254532;254533;254534;254535;254536;254537;254538;254539;254540;254541;254542;254543;254544;254545;254546;254547;254548;254549;254550;254551;254552;254553;254554;254555;254556 156224;156225;156226;156227;156228;156229;156230;156231;156232;156233;156234;156235;156236 156224 13 LRGETASFDIEANGK Unmodified 1606.7951 0.79509919 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 2 2 3 2 2 2 2 12 15 12 3 3 2 27 21 14 2 3 2 15 13 15 28.072 27.376 2;3 2.8315E-35 5970 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 269.93 257.35 16447000000 21617000 20151000 16915000 9852900 11198000 9207200 22532000 22020000 15785000 809240000 1129300000 987710000 24256000 30265000 23630000 3172100000 2700100000 2733200000 35647000 40720000 29435000 1801800000 1422600000 1357800000 13537 463 13200 254557;254558;254559;254560;254561;254562;254563;254564;254565;254566;254567;254568;254569;254570;254571;254572;254573;254574;254575;254576;254577;254578;254579;254580;254581;254582;254583;254584;254585;254586;254587;254588;254589;254590;254591;254592;254593;254594;254595;254596;254597;254598;254599;254600;254601;254602;254603;254604;254605;254606;254607;254608;254609;254610;254611;254612;254613;254614;254615;254616;254617;254618;254619;254620;254621;254622;254623;254624;254625;254626;254627;254628;254629;254630;254631;254632;254633;254634;254635;254636;254637;254638;254639;254640;254641;254642;254643;254644;254645;254646;254647;254648;254649;254650;254651;254652;254653;254654;254655;254656;254657;254658;254659;254660;254661;254662;254663;254664;254665;254666;254667;254668;254669;254670;254671;254672;254673;254674;254675;254676;254677;254678;254679;254680;254681;254682;254683;254684;254685;254686;254687;254688;254689;254690;254691;254692;254693;254694;254695;254696;254697;254698;254699;254700;254701;254702;254703;254704;254705;254706;254707;254708;254709;254710;254711;254712;254713;254714;254715;254716;254717;254718;254719;254720;254721;254722;254723;254724;254725;254726;254727;254728;254729;254730;254731;254732;254733;254734;254735 156237;156238;156239;156240;156241;156242;156243;156244;156245;156246;156247;156248;156249;156250;156251;156252;156253;156254;156255;156256;156257;156258;156259;156260;156261;156262;156263;156264;156265;156266;156267;156268;156269;156270;156271;156272;156273;156274;156275;156276;156277;156278;156279;156280;156281;156282;156283;156284;156285;156286;156287;156288;156289;156290;156291;156292;156293;156294;156295;156296;156297;156298;156299;156300;156301;156302;156303;156304;156305;156306;156307;156308;156309;156310;156311;156312;156313;156314;156315;156316;156317;156318;156319;156320;156321;156322;156323;156324;156325;156326;156327;156328;156329;156330;156331;156332;156333;156334;156335;156336;156337;156338;156339;156340;156341;156342;156343;156344;156345;156346;156347;156348;156349;156350;156351;156352;156353;156354;156355;156356;156357;156358;156359;156360;156361;156362;156363;156364;156365;156366;156367;156368;156369;156370;156371;156372;156373;156374;156375;156376;156377;156378;156379;156380;156381;156382;156383;156384;156385;156386;156387;156388;156389;156390;156391;156392;156393 156270 146 LRGSVNPECTLAQLGAAK Unmodified 1883.9887 0.98873039 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 31.317 29.764 3 0.0013375 10196 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 62.203 58.423 14100000 0 0 0 3621100 6031100 4447400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13538 517 13201 254736;254737;254738 156394 156394 1 LRGVHAVTR Unmodified 1007.5988 0.5988464 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 11.097 11.307 2 8.2809E-22 2241 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 251.23 214.14 4273700000 0 0 0 5359500 0 0 0 0 0 335000000 248210000 281550000 0 0 0 1486200000 341160000 360590000 0 0 0 425110000 388950000 401530000 13539 458 13202 254739;254740;254741;254742;254743;254744;254745;254746;254747;254748 156395;156396;156397;156398;156399;156400;156401;156402;156403 156395 9 LRHEEAMTPDAVVR Unmodified 1622.8199 0.81987415 881 P0AES2 gudD Glucarate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 15.158 15.811 2;3 0.0012636 5269 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 55.885 53.459 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13540 881 13203 254749;254750;254751 156404;156405;156406 156405 3 LRPCTPR Unmodified 898.48071 0.4807051 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 10.697 11.474 2 0.004419 2780 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.65 95.494 321650000 96807000 76119000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79465000 69260000 0 0 0 0 13541 1237 13204 254752;254753;254754;254755 156407 156407 1 LRPGAELLEGAHVGNFVEMK Unmodified 2166.1256 0.12555822 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 1 2 2 1 37.086 35.345 3;4 5.0348E-15 17386 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 151.82 147.71 1296200000 72817000 65609000 54489000 0 0 0 143440000 164280000 134210000 0 0 0 73288000 74959000 80805000 0 0 0 229620000 105550000 97110000 0 0 0 13542 720 13205 254756;254757;254758;254759;254760;254761;254762;254763;254764;254765;254766;254767;254768;254769;254770;254771;254772;254773 156408;156409;156410;156411;156412;156413;156414;156415;156416;156417;156418;156419 156412 8 LRPQTGWQPLAFALDWQRPAR Unmodified 2506.3346 0.33458022 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 1 2 2 2 47.402 45.882 3;4 3.7436E-35 18193 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 176.11 174.5 338050000 0 0 0 3123300 3652500 2908100 0 0 0 14515000 17156000 19904000 0 0 0 8597700 0 8193100 0 0 0 87979000 91907000 80117000 13543 205 13206 254774;254775;254776;254777;254778;254779;254780;254781;254782;254783;254784;254785;254786;254787;254788;254789 156420;156421;156422;156423;156424;156425;156426;156427;156428;156429;156430 156427 11 LRPSGAAGMLVTSAEAFADYQK Unmodified 2282.1365 0.13651684 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 45.926 44.587 3 0.00018939 21916 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.552 64.201 95901000 34102000 30018000 31781000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13544 1353 13207 254790;254791;254792 156431;156432;156433 156431 3 LRPSPVDEAK Unmodified 1110.6033 0.60332266 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 11.831 12.599 2;3 2.2508E-12 3387 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 218.6 192.87 2171800000 323240000 319910000 270620000 1203600 424480 1247400 183900000 174460000 157300000 2608700 2551800 2813600 120690000 107560000 96549000 0 0 0 134920000 135500000 131200000 1812000 1747800 1490400 13545 43 13208 254793;254794;254795;254796;254797;254798;254799;254800;254801;254802;254803;254804;254805;254806;254807;254808;254809;254810;254811;254812;254813;254814;254815;254816;254817;254818;254819;254820;254821;254822;254823;254824;254825;254826;254827 156434;156435;156436;156437;156438;156439;156440;156441;156442;156443;156444;156445;156446 156443 13 LRSEIDNVK Unmodified 1072.5877 0.58767259 11 CON__P04264 no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 12.624 12.881 3 0.0017698 3016 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 80.688 62.249 53240000 0 0 0 0 0 0 0 0 0 15485000 9842800 14734000 0 0 0 0 0 0 0 0 0 5857100 2977000 4343500 + 13546 11 13209 254828;254829;254830;254831;254832;254833 156447;156448;156449 156448 3 LRSEIDNVKK Unmodified 1200.6826 0.68263561 11 CON__P04264 no no 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 2 1 2 11.234 11.689 2;3 4.0807E-06 2389 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 171.99 129.88 795150000 0 0 0 15842000 22165000 24006000 0 0 0 187880000 190540000 176070000 0 0 2063400 7438200 8290300 9465400 0 0 0 67034000 20547000 63805000 + 13547 11 13210 254834;254835;254836;254837;254838;254839;254840;254841;254842;254843;254844;254845;254846;254847;254848;254849;254850;254851;254852;254853;254854 156450;156451;156452;156453;156454;156455;156456;156457;156458;156459;156460;156461;156462;156463;156464 156456 15 LRVSVADVSK Unmodified 1072.6241 0.6240581 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 1 1 2 1 2 17.543 17.515 2;3 0.0013516 5145 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 64.374 51.758 25631000 0 0 0 0 0 0 0 0 0 5601900 5581700 4974000 0 0 0 1076300 0 1330600 0 0 0 3851300 1735500 1479400 13548 1742 13211 254855;254856;254857;254858;254859;254860;254861;254862;254863;254864;254865;254866;254867 156465;156466;156467;156468;156469 156468 5 LRWPVSEEIYR Unmodified 1446.7619 0.76194857 112 P05523 mutM Formamidopyrimidine-DNA glycosylase yes yes 0 0 1 By matching By MS/MS 1 1 31.586 31.613 3 7.2058E-05 10450 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 94.616 91.295 8893000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4942900 3950200 0 0 0 0 0 0 0 13549 112 13212 254868;254869 156470 156470 1 LSAAEVALITTLLLR Unmodified 1582.9658 0.96579333 1331 P29217 yceH UPF0502 protein YceH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.844 54.371 2 0.017947 27019 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.674 56.402 130950000 14701000 12989000 12076000 0 0 0 7057100 5393500 7348200 0 0 0 14974000 13371000 10993000 0 0 0 11032000 10764000 10256000 0 0 0 13550 1331 13213 254870;254871;254872;254873;254874;254875;254876;254877;254878;254879;254880;254881 156471;156472 156472 0 LSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEK Unmodified 4057.0579 0.057879175 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By matching By MS/MS 1 1 54.762 53.311 4 1.1434E-59 26419 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 245.24 228.23 131470000 0 0 0 5473500 0 0 0 0 126000000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13551 1608 13214 254882;254883 156473 156473 1 LSAEDIWDR Unmodified 1103.5247 0.52473799 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.722 34.962 2 5.7115E-05 16949 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 147.19 134.6 209140000 16715000 19632000 15501000 0 416300 0 11840000 11716000 17899000 2148500 1331800 1632700 15238000 16873000 15660000 0 0 0 19347000 21845000 21343000 0 0 0 13552 1164 13215 254884;254885;254886;254887;254888;254889;254890;254891;254892;254893;254894;254895;254896;254897;254898;254899 156474;156475;156476;156477;156478;156479;156480;156481;156482 156478 9 LSAELSR Unmodified 774.42357 0.42356738 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.512 15.055 2 1.2794E-05 3917 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 181.2 100.82 5482000000 28395000 26407000 22052000 4014200 2946000 0 43198000 44138000 43184000 809930000 807250000 759500000 38519000 31257000 28497000 460590000 478890000 403250000 58151000 51756000 50486000 453400000 423440000 412700000 13553 1616 13216 254900;254901;254902;254903;254904;254905;254906;254907;254908;254909;254910;254911;254912;254913;254914;254915;254916;254917;254918;254919;254920;254921;254922 156483;156484;156485;156486;156487;156488;156489;156490;156491 156489 9 LSAFTQLK Unmodified 906.51747 0.51746776 1955 Q46822 idi Isopentenyl-diphosphate Delta-isomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.28 24.241 2 0.0036566 11177 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.308 58.181 159290000 25488000 20365000 15856000 0 0 0 17182000 16401000 17893000 0 0 0 7873800 6947700 8310100 0 0 0 10107000 6333800 6530100 0 0 0 13554 1955 13217 254923;254924;254925;254926;254927;254928;254929;254930;254931;254932;254933;254934 156492;156493;156494 156493 3 LSAHQVQQTLR Unmodified 1279.6997 0.69968266 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 14.466 15.256 2;3 0.00010057 5163 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 82.362 68.958 336460000 27843000 28818000 34832000 235820 376400 239160 37830000 34221000 36168000 0 0 0 19702000 16534000 17916000 0 0 0 29672000 24388000 27679000 0 0 0 13555 35 13218 254935;254936;254937;254938;254939;254940;254941;254942;254943;254944;254945;254946;254947;254948;254949;254950;254951;254952;254953;254954;254955;254956;254957;254958;254959;254960;254961 156495;156496;156497;156498;156499;156500;156501;156502;156503;156504;156505;156506 156495 9 LSALCSEGAHDQVYETVR Unmodified 2033.9477 0.94765344 464 P0A8V6 fadR Fatty acid metabolism regulator protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 24.224 23.324 2;3 5.6846E-17 10256 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 178.23 164.83 413810000 28696000 22435000 24373000 1208700 1347600 1497400 34797000 30780000 28302000 6038000 6715900 5627400 26574000 24465000 26201000 1794700 3195200 1907500 42577000 43423000 41168000 3707700 3106100 3878200 13556 464 13219 254962;254963;254964;254965;254966;254967;254968;254969;254970;254971;254972;254973;254974;254975;254976;254977;254978;254979;254980;254981;254982;254983;254984;254985;254986;254987;254988;254989;254990;254991 156507;156508;156509;156510;156511;156512;156513;156514;156515;156516;156517 156513 8 LSALHPR Unmodified 792.46062 0.46062159 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.716 12.371 2 0.0010644 2735 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 137.5 129.35 605070000 22155000 0 6365300 14416000 13722000 16312000 22983000 21608000 0 29355000 21815000 26945000 22184000 24913000 19629000 0 0 2245500 70170000 66159000 59609000 42538000 51199000 50748000 13557 215 13220 254992;254993;254994;254995;254996;254997;254998;254999;255000;255001;255002;255003;255004;255005;255006;255007;255008;255009;255010;255011 156518;156519;156520;156521;156522;156523;156524;156525;156526;156527;156528;156529;156530;156531;156532 156523 15 LSALPDDTLVCCAHEYTLSNMK Unmodified 2537.16 0.16003075 708 P0AC84 gloB Hydroxyacylglutathione hydrolase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 42.399 40.708 3 3.9026E-15 19978 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 139.11 131.49 362840000 87124000 0 71450000 0 0 0 41814000 50220000 0 0 0 0 0 15369000 17189000 0 0 0 23652000 22536000 33483000 0 0 0 13558 708 13221 255012;255013;255014;255015;255016;255017;255018;255019;255020 156533;156534 156533 2 LSALTFAAPDYDRYPCLK Unmodified 2100.035 0.035011883 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 42.255 40.318 3 1.5275E-06 19047 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 90.223 81.404 108930000 0 0 0 0 0 0 7939900 8181200 0 5563100 0 0 21120000 0 13465000 0 0 0 26127000 26534000 0 0 0 0 13559 1575 13222 255021;255022;255023;255024;255025;255026;255027 156535;156536 156536 2 LSALVEIYR Unmodified 1062.6073 0.6073454 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 8 6 7 1 1 1 16 15 16 1 1 1 8 5 6 40.973 39.887 2;3 4.0619E-11 12652 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 205.57 195.58 33330000000 169690000 169880000 132610000 0 0 0 245240000 242460000 248060000 2093200000 1630500000 1765100000 183320000 191540000 184560000 5262200000 5118800000 5540500000 261270000 181950000 195650000 3348900000 3104300000 3060100000 13560 463 13223 255028;255029;255030;255031;255032;255033;255034;255035;255036;255037;255038;255039;255040;255041;255042;255043;255044;255045;255046;255047;255048;255049;255050;255051;255052;255053;255054;255055;255056;255057;255058;255059;255060;255061;255062;255063;255064;255065;255066;255067;255068;255069;255070;255071;255072;255073;255074;255075;255076;255077;255078;255079;255080;255081;255082;255083;255084;255085;255086;255087;255088;255089;255090;255091;255092;255093;255094;255095;255096;255097;255098;255099;255100;255101;255102;255103;255104;255105;255106;255107;255108;255109;255110;255111;255112;255113;255114;255115;255116;255117;255118;255119;255120;255121;255122;255123;255124;255125;255126;255127 156537;156538;156539;156540;156541;156542;156543;156544;156545;156546;156547;156548;156549;156550;156551;156552;156553;156554;156555;156556;156557;156558;156559;156560;156561;156562;156563;156564;156565;156566;156567;156568;156569;156570;156571;156572;156573;156574;156575;156576;156577;156578;156579;156580;156581;156582;156583;156584;156585;156586;156587;156588;156589;156590;156591;156592;156593;156594;156595;156596;156597;156598;156599;156600;156601;156602;156603;156604;156605;156606;156607;156608;156609;156610;156611;156612;156613;156614;156615;156616;156617;156618;156619;156620;156621;156622;156623;156624;156625;156626;156627;156628;156629;156630;156631;156632;156633;156634;156635;156636;156637;156638;156639;156640;156641;156642;156643;156644;156645;156646;156647;156648;156649;156650;156651;156652;156653;156654;156655;156656;156657;156658;156659;156660;156661;156662;156663;156664;156665;156666;156667;156668;156669;156670;156671;156672;156673;156674;156675;156676;156677;156678 156567 133 LSANWMAAAGHPGEDAGLYEAVK Unmodified 2357.111 0.11103037 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 39.765 38.175 3 0.0023517 18328 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 57.566 56.356 233440000 0 112940000 119240000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1269500 13561 1107 13224 255128;255129;255130 156679;156680 156680 2 LSAPTMK Unmodified 746.39966 0.39966081 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.992 15.782 2 0.0059588 5341 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 97.473 43.918 410110000 23140000 30550000 25605000 0 0 0 37606000 35603000 32435000 0 0 0 39295000 32452000 38135000 0 0 0 37806000 40377000 37106000 0 0 0 13562 1421 13225 255131;255132;255133;255134;255135;255136;255137;255138;255139;255140;255141;255142 156681;156682;156683;156684;156685;156686;156687;156688 156682 8 LSASYVGEDNER Unmodified 1338.6052 0.60517315 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.182 17.751 2 3.7691E-23 6593 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 266.24 266.24 2047400000 0 0 180780000 2852800 2411200 2042500 275090000 0 239660000 4314100 3653700 2781200 212930000 202170000 200200000 0 0 0 247520000 226410000 240840000 3739800 0 0 13563 445 13226 255143;255144;255145;255146;255147;255148;255149;255150;255151;255152;255153;255154;255155;255156;255157;255158;255159 156689;156690;156691;156692;156693;156694;156695;156696;156697;156698;156699;156700;156701 156689 13 LSAYFPASLK Unmodified 1095.5964 0.59644637 1478 P37637 mdtF Multidrug resistance protein MdtF yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 36.391 34.355 2 0.014947 13571 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 62.823 54.001 44777000 0 0 3234200 0 992970 831220 12024000 8397600 10275000 3689500 3054600 2278400 0 0 0 0 0 0 0 0 0 0 0 0 13564 1478 13227 255160;255161;255162;255163;255164;255165;255166;255167;255168 156702;156703;156704 156702 3 LSCPITAEDTSGTLYDK Unmodified 1869.8666 0.86660915 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.059 29.702 2 4.1906E-24 14055 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 206.53 202.52 751460000 69330000 56714000 52954000 0 0 0 75580000 68809000 60096000 0 0 0 57951000 58922000 55116000 0 0 0 68329000 68568000 59088000 0 0 0 13565 1224 13228 255169;255170;255171;255172;255173;255174;255175;255176;255177;255178;255179;255180 156705;156706;156707;156708;156709;156710;156711;156712;156713;156714;156715;156716 156707 12 LSCQLYQR Unmodified 1066.523 0.52296385 407 P0A884 thyA Thymidylate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.252 17.934 2 1.1284E-06 6110 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 195.06 185.08 626610000 40946000 42752000 37325000 0 0 0 49434000 50827000 46984000 0 0 0 51155000 49679000 55193000 0 0 0 65854000 68355000 68109000 0 0 0 13566 407 13229 255181;255182;255183;255184;255185;255186;255187;255188;255189;255190;255191;255192 156717;156718;156719;156720;156721;156722;156723;156724 156724 8 LSDAEVDELFALVK Unmodified 1547.8083 0.80828964 1337 P30126 leuD 3-isopropylmalate dehydratase small subunit yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 54.884 53.47 2 4.6813E-11 26428 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.2 109.85 119930000 51982000 0 50990000 0 0 0 0 0 0 0 0 0 0 0 6110100 0 0 0 10846000 0 0 0 0 0 13567 1337 13230 255193;255194;255195;255196;255197 156725;156726 156726 2 LSDEELK Unmodified 832.41781 0.4178133 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 13.97 14.203 2 0.0017557 3602 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 124.37 68.348 300450000 0 0 0 0 0 0 88681000 93268000 0 0 21889000 24239000 0 0 0 18977000 10022000 15822000 0 0 0 0 12175000 15381000 13568 1057 13231 255198;255199;255200;255201;255202;255203;255204;255205;255206 156727;156728;156729;156730;156731;156732;156733;156734;156735 156727 9 LSDEVTDSPMVDK Unmodified 1434.6548 0.65482546 479 P0A908 mipA MltA-interacting protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.341 23.36 2 3.4883E-07 10295 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.94 134.33 155430000 15391000 16216000 12230000 3819900 4042000 3845100 0 0 0 7153300 7138100 7345800 6326400 5352600 7574000 0 0 0 12963000 13174000 13830000 6868800 5988600 6176500 13569 479 13232 255207;255208;255209;255210;255211;255212;255213;255214;255215;255216;255217;255218;255219;255220;255221;255222;255223;255224;255225;255226 156736;156737;156738;156739;156740;156741;156742;156743;156744;156745;156746;156747 156745 12 LSDFVEQVYK Unmodified 1226.6183 0.61830402 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.792 32.202 2 3.2067E-05 15588 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 144.09 111.2 1711300000 8684500 6990400 8733000 0 0 0 176460000 167170000 141600000 14382000 14543000 14226000 165000000 158280000 160610000 0 4542000 0 209810000 223840000 207830000 9572600 9268900 9810600 13570 723 13233 255227;255228;255229;255230;255231;255232;255233;255234;255235;255236;255237;255238;255239;255240;255241;255242;255243;255244;255245;255246 156748;156749;156750;156751;156752;156753;156754;156755;156756;156757;156758 156753 10 LSDGLCMEDEQFSVK Unmodified 1756.7648 0.76478662 525 P0A9I8 nirD Nitrite reductase (NADH) small subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.377 35.703 2 7.8971E-15 17695 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.66 181.66 284070000 15505000 15575000 15715000 0 0 0 28486000 23527000 27889000 0 0 0 26402000 23842000 22878000 0 0 0 29365000 27230000 27658000 0 0 0 13571 525 13234 255247;255248;255249;255250;255251;255252;255253;255254;255255;255256;255257;255258 156759;156760;156761 156759 3 LSDIAPTMLSLMGMEIPQEMTGK Unmodified 2492.2035 0.20347547 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 2 2 1 2 1 1 55.528 54.039 2;3 1.8615E-15 25592 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 208.66 203.94 625460000 18403000 14327000 17595000 0 0 0 90011000 32372000 73659000 0 0 0 114380000 107240000 34287000 0 0 0 80720000 23935000 18528000 0 0 0 13572 1487 13235 255259;255260;255261;255262;255263;255264;255265;255266;255267;255268;255269;255270;255271;255272;255273;255274;255275;255276 156762;156763;156764;156765;156766 156766 5 LSDLGYTNK Unmodified 1009.508 0.50802529 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.866 17.624 2 3.4027E-11 6219 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 208.86 174.04 577580000 47730000 47512000 46132000 0 0 0 61026000 51819000 57315000 0 0 0 33003000 31429000 28186000 0 0 0 61884000 57034000 54507000 0 0 0 13573 289 13236 255277;255278;255279;255280;255281;255282;255283;255284;255285;255286;255287;255288 156767;156768;156769;156770;156771;156772;156773;156774 156773 8 LSDQEIEQTLQAFEAR Unmodified 1876.9167 0.91667089 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 2 1 53.361 52.057 2;3 6.7412E-89 25360 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 350.8 338.03 5271200000 326940000 306110000 303550000 1307600 1326200 988050 430220000 460680000 413210000 1633900 0 1265900 474470000 432000000 438690000 2261700 1380400 1672900 507490000 579390000 579970000 1270600 3169300 2238100 13574 1572 13237 255289;255290;255291;255292;255293;255294;255295;255296;255297;255298;255299;255300;255301;255302;255303;255304;255305;255306;255307;255308;255309;255310;255311;255312;255313;255314;255315;255316;255317;255318;255319;255320;255321;255322;255323;255324 156775;156776;156777;156778;156779;156780;156781;156782;156783;156784;156785;156786;156787;156788;156789;156790;156791;156792;156793;156794;156795;156796 156789 22 LSDQIIK Unmodified 815.47527 0.4752686 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.867 18.499 2 0.0027054 6802 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.04 39.321 163150000 25902000 26462000 22684000 0 369850 0 14255000 0 13786000 0 0 0 7202100 10169000 8043800 0 0 0 13894000 11635000 8743900 0 0 0 13575 118 13238 255325;255326;255327;255328;255329;255330;255331;255332;255333;255334;255335;255336 156797;156798;156799;156800;156801 156800 5 LSDQPVLSVQR Unmodified 1240.6776 0.67755023 112 P05523 mutM Formamidopyrimidine-DNA glycosylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.882 23.907 2 1.4383E-05 7827 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 142.43 123.65 100900000 5939500 0 0 0 0 0 8106400 9789400 7792300 1589100 1172300 1536800 5996300 6741900 5848500 6624000 5142500 5769600 7999100 8500800 7012700 2241100 1484800 1617900 13576 112 13239 255337;255338;255339;255340;255341;255342;255343;255344;255345;255346;255347;255348;255349;255350;255351;255352;255353;255354;255355 156802;156803 156802 2 LSDSPGK Unmodified 702.35482 0.35481911 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1 1 1 2 1 1 2 9.1794 10.006 2 0.091209 1956 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 55.504 42.297 921940000 220120000 294650000 5456100 0 0 0 119310000 105660000 108780000 0 0 0 8476500 7586500 9187600 0 0 0 458110 20554000 21695000 0 0 0 13577 1148 13240 255356;255357;255358;255359;255360;255361;255362;255363;255364;255365;255366;255367;255368;255369;255370 156804;156805;156806 156806 1 LSDSVHDGDR Unmodified 1099.4894 0.48941511 1606 P52119 ratB UPF0125 protein RatB yes yes 0 0 0 By MS/MS 1 10.476 11.28 2 0.013482 2607 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 62.823 39.752 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13578 1606 13241 255371 156807 156807 1 LSDYGVQLR Unmodified 1049.5506 0.55055881 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.012 24.919 2 1.729E-11 11471 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 217.21 190.61 8747100000 1170300000 1205100000 1060300000 34007000 31041000 24315000 399710000 376620000 394550000 66547000 61945000 64143000 505800000 512010000 496370000 43185000 37986000 38810000 720330000 732120000 641180000 44072000 41646000 44981000 13579 375 13242 255372;255373;255374;255375;255376;255377;255378;255379;255380;255381;255382;255383;255384;255385;255386;255387;255388;255389;255390;255391;255392;255393;255394;255395 156808;156809;156810;156811;156812;156813;156814;156815;156816;156817;156818;156819;156820;156821;156822;156823;156824;156825;156826;156827;156828;156829 156814 22 LSEDAFDDQCTGANPR Unmodified 1794.7479 0.747891 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 23.55 22.741 2;3 4.7072E-89 9424 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 354.27 354.27 4533100000 460380000 444430000 450700000 14901000 18961000 20737000 593220000 564690000 549740000 18806000 28318000 14584000 246090000 233410000 211200000 0 0 0 203930000 203650000 201130000 15257000 15823000 23101000 13580 548 13243 255396;255397;255398;255399;255400;255401;255402;255403;255404;255405;255406;255407;255408;255409;255410;255411;255412;255413;255414;255415;255416;255417;255418;255419;255420;255421;255422;255423;255424;255425;255426;255427;255428;255429;255430;255431;255432;255433;255434;255435;255436 156830;156831;156832;156833;156834;156835;156836;156837;156838;156839;156840;156841;156842;156843;156844;156845;156846;156847;156848;156849;156850;156851;156852;156853;156854;156855;156856;156857;156858;156859;156860;156861;156862 156859 33 LSELEQR Unmodified 873.4556 0.45559579 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 13.501 14.032 2 0.00043013 4161 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 154.35 42.536 332260000 22539000 21541000 24481000 263050 0 243620 25466000 24708000 25934000 10184000 10666000 9214900 18616000 20302000 19787000 2596400 2065800 2086000 24972000 26642000 22249000 6438700 5340200 5923100 13581 1197 13244 255437;255438;255439;255440;255441;255442;255443;255444;255445;255446;255447;255448;255449;255450;255451;255452;255453;255454;255455;255456;255457;255458;255459;255460;255461;255462;255463 156863;156864;156865;156866;156867;156868;156869;156870;156871;156872;156873;156874 156868 11 LSELGNQYSNNVLDATMGWTK Unmodified 2340.1056 0.10561064 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 2 2 2 2 2 2 2 2 2 1 50.396 48.98 2;3 9.8864E-43 23975 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 302.74 301.22 518640000 34792000 31238000 14965000 0 1287900 0 49279000 48740000 52769000 0 0 0 40645000 38074000 38520000 0 0 0 62265000 51373000 52314000 2375700 0 0 13582 1298 13245 255464;255465;255466;255467;255468;255469;255470;255471;255472;255473;255474;255475;255476;255477;255478;255479;255480;255481;255482;255483;255484;255485;255486;255487;255488 156875;156876;156877;156878;156879;156880;156881;156882;156883;156884;156885;156886;156887;156888;156889;156890 156883 16 LSEPADRETMAAELQR Unmodified 1815.8785 0.87851124 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 22.713 22.275 3 0.0089947 9490 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 44.312 33.458 20885000 0 0 0 0 0 0 0 0 0 0 0 0 4174000 2834700 0 0 0 0 0 6976400 6899700 0 0 0 13583 1230 13246 255489;255490;255491;255492 156891 156891 1 LSEQIQNDLLLR Unmodified 1440.7936 0.79364262 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.424 37.6 2 1.4966E-30 18780 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 250.76 239.55 264090000 27810000 28414000 24109000 0 0 0 58193000 49670000 53592000 2113000 1741000 0 3697100 2531100 3790100 0 0 0 3287100 2821800 2317500 0 0 0 13584 1413 13247 255493;255494;255495;255496;255497;255498;255499;255500;255501;255502;255503;255504;255505;255506 156892;156893 156892 1 LSEQSPLGTGR Unmodified 1143.5884 0.58840088 1697 P64610 yrbL Uncharacterized protein YrbL yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 17.59 17.981 2 0.00010599 5437 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 118.71 102.51 59069000 0 0 0 0 0 0 7680800 6204400 7800500 3084800 3944400 4194900 3887600 4932000 0 0 0 0 5481300 4626600 3828000 2047400 0 1355900 13585 1697 13248 255507;255508;255509;255510;255511;255512;255513;255514;255515;255516;255517;255518;255519 156894;156895 156895 2 LSETVIKPFYYQR Unmodified 1642.8719 0.87189295 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.162 30.664 3 0.1035 14436 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 30.059 29.391 124870000 20075000 15585000 15499000 3480100 0 0 5761400 7132500 8106000 3238000 0 0 0 0 5483500 0 0 0 15152000 14895000 10465000 0 0 0 13586 198 13249 255520;255521;255522;255523;255524;255525;255526;255527;255528;255529;255530;255531 156896 156896 0 LSEVAHLLK Unmodified 1008.5968 0.59678072 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.747 21.128 2 6.4273E-05 8051 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 145.34 88.795 1230900000 98397000 122060000 102740000 0 0 0 88423000 99743000 112670000 0 0 0 93447000 91621000 90977000 0 0 0 105240000 110220000 115350000 0 0 0 13587 59 13250 255532;255533;255534;255535;255536;255537;255538;255539;255540;255541;255542;255543 156897;156898;156899;156900;156901;156902;156903;156904 156902 7 LSEVEGVNNR Unmodified 1115.5571 0.55710075 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.561 14.426 2 1.5892E-12 4255 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 217.02 193.95 935300000 69775000 54701000 46228000 0 0 0 78215000 79457000 85748000 0 0 0 81854000 76520000 67856000 0 0 0 94762000 109950000 90232000 0 0 0 13588 720 13251 255544;255545;255546;255547;255548;255549;255550;255551;255552;255553;255554;255555 156905;156906;156907;156908;156909;156910;156911;156912 156912 8 LSEVMPGAGGR Unmodified 1072.5335 0.53352853 1175 P21338 rna Ribonuclease I yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 10.458 11.27 3 0.080832 2594 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 26.118 10.73 371340000 0 0 92449000 0 0 0 2122100 0 0 0 0 0 0 0 0 0 0 0 96459000 88106000 92202000 0 0 0 13589 1175 13252 255556;255557;255558;255559;255560 156913 156913 1 LSFDINEDVAAPYIATGAR Unmodified 2022.0058 0.0058202445 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 2 1 1 2 2 2 2 2 2 34.855 34.517 2;4 2.2948E-29 24370 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 268.93 263.45 283850000 49068000 41905000 37222000 0 0 0 20794000 15647000 11302000 0 0 0 19311000 12481000 15645000 0 0 0 22448000 18161000 19865000 0 0 0 13590 1107 13253 255561;255562;255563;255564;255565;255566;255567;255568;255569;255570;255571;255572;255573;255574;255575;255576;255577;255578;255579;255580 156914;156915;156916;156917;156918;156919;156920 156915 7 LSFDKEK Unmodified 865.45453 0.45453316 401 P0A867 talA Transaldolase A yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 11.869 12.671 2 0.04483 3532 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 71.134 36.417 179880000 58550000 46222000 2224200 0 0 0 0 31311000 34539000 0 0 0 0 1845200 0 0 0 0 0 5190600 0 0 0 0 13591 401 13254 255581;255582;255583;255584;255585;255586;255587 156921 156921 1 LSFETSMHR Unmodified 1106.5179 0.51787847 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 1 1 2 2 2 2 2 2 2 2 2 1 18.915 19.442 2;3 2.8407E-06 7243 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.15 132.04 4931400000 1730100000 1528900000 1250400000 4811900 6113500 4276500 6695700 10890000 10565000 0 0 0 32344000 28589000 28139000 0 0 0 96830000 92707000 98242000 1021500 799980 0 13592 318 13255 255588;255589;255590;255591;255592;255593;255594;255595;255596;255597;255598;255599;255600;255601;255602;255603;255604;255605;255606;255607;255608;255609;255610;255611;255612;255613;255614;255615;255616;255617 156922;156923;156924;156925;156926;156927;156928;156929;156930;156931;156932;156933;156934;156935;156936;156937;156938;156939;156940 156934 19 LSFGQVVR Unmodified 904.51305 0.51305109 287 P0A6W3 mraY Phospho-N-acetylmuramoyl-pentapeptide-transferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 1 2 2 2 2 2 2 28.462 27.117 2 0.0008022 12847 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.54 90.072 233290000 0 6233300 6142500 802840 854940 1133000 23196000 21514000 18995000 0 1912000 2193400 18874000 18912000 19186000 0 0 0 30232000 32821000 30286000 0 0 0 13593 287 13256 255618;255619;255620;255621;255622;255623;255624;255625;255626;255627;255628;255629;255630;255631;255632;255633;255634;255635;255636;255637;255638;255639;255640;255641;255642 156941;156942;156943;156944;156945;156946;156947 156941 7 LSFIRPGLR Unmodified 1057.6396 0.63964859 1114 P15770 aroE Shikimate dehydrogenase (NADP(+)) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.078 24.955 3 0.0001088 11029 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.23 109.29 219900000 21579000 16949000 18995000 0 0 0 11004000 13550000 15445000 0 0 0 16105000 15898000 12887000 0 0 0 25078000 25119000 27292000 0 0 0 13594 1114 13257 255643;255644;255645;255646;255647;255648;255649;255650;255651;255652;255653;255654 156948;156949;156950;156951;156952;156953;156954;156955;156956;156957;156958;156959 156956 12 LSFMTQTTLSVDDTSDVIDALR Unmodified 2427.1839 0.18392054 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.495 48.186 3 0.14619 22568 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 20.921 18.08 159930000 24679000 16083000 23615000 0 0 0 0 0 0 0 0 0 0 15930000 11253000 0 0 0 19651000 25439000 23280000 0 0 0 13595 1650 13258 255655;255656;255657;255658;255659;255660;255661;255662 156960;156961 156961 2 LSFSLPADMTDQSGK Unmodified 1595.7501 0.75012283 851 P0AEE1 dcrB Protein DcrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.417 41.843 2 7.6593E-07 20666 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 147.71 128.57 1058700000 0 0 0 5866500 5751900 5236800 128440000 153750000 149870000 46820000 47935000 42119000 0 0 0 17529000 12148000 10740000 190960000 0 181620000 20895000 18247000 20784000 13596 851 13259 255663;255664;255665;255666;255667;255668;255669;255670;255671;255672;255673;255674;255675;255676;255677;255678;255679 156962;156963;156964;156965;156966;156967;156968;156969;156970;156971;156972;156973;156974;156975;156976;156977;156978 156969 17 LSFTGSTEIGR Unmodified 1166.5932 0.5931519 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.434 27.186 2 0.00010056 12756 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.75 102.36 218270000 39595000 36402000 37018000 0 0 0 21966000 23933000 16675000 0 0 0 5663000 5784300 5801300 0 0 0 9159100 8119000 8149300 0 0 0 13597 1258 13260 255680;255681;255682;255683;255684;255685;255686;255687;255688;255689;255690;255691 156979;156980 156980 2 LSGANNFR Unmodified 877.44061 0.44061443 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.16 13.762 2 0.000249 3489 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 150.02 133.87 112380000 0 0 0 0 0 0 8939800 8491500 0 13241000 11640000 12281000 5210500 4198300 5089900 0 0 0 9265700 8767300 11153000 6151300 4329300 3625900 13598 143 13261 255692;255693;255694;255695;255696;255697;255698;255699;255700;255701;255702;255703;255704;255705 156981;156982;156983;156984 156983 4 LSGAQVMATDLR Unmodified 1260.6496 0.64962092 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 28.676 27.303 2 7.045E-31 12440 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 261.65 239.56 1449300000 110330000 93469000 92279000 0 1131500 0 96927000 100810000 99758000 1466400 1168200 1397500 128470000 123780000 120170000 0 819340 0 152130000 169870000 153110000 0 953750 1258500 13599 311 13262 255706;255707;255708;255709;255710;255711;255712;255713;255714;255715;255716;255717;255718;255719;255720;255721;255722;255723;255724;255725 156985;156986;156987;156988;156989;156990;156991;156992;156993;156994 156990 10 LSGDTLDGETAFR Unmodified 1380.6521 0.65212334 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 1 1 1 2 2 2 2 1 1 1 2 2 2 2 3 3 1 1 1 29.014 27.622 2 4.2823E-31 13177 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 248.88 243.1 3371500000 326320000 314890000 258410000 4896200 3997800 4796200 247620000 260310000 282870000 10429000 8640200 10585000 226500000 230350000 228920000 0 0 0 301660000 321230000 315250000 3996500 5373500 4523300 13600 59 13263 255726;255727;255728;255729;255730;255731;255732;255733;255734;255735;255736;255737;255738;255739;255740;255741;255742;255743;255744;255745;255746;255747;255748;255749;255750;255751;255752;255753;255754;255755;255756;255757;255758;255759;255760;255761 156995;156996;156997;156998;156999;157000;157001;157002;157003;157004;157005;157006;157007;157008;157009;157010;157011;157012;157013;157014 157005 19 LSGEALQGTEGFGIDASILDR Unmodified 2148.0699 0.069877064 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.77 49.428 2;3 2.8826E-52 24309 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 314.52 303.26 374750000 26042000 31766000 29318000 0 0 0 31179000 36101000 28658000 0 0 0 28508000 22717000 20757000 0 0 0 39715000 45491000 34499000 0 0 0 13601 338 13264 255762;255763;255764;255765;255766;255767;255768;255769;255770;255771;255772;255773;255774;255775;255776;255777;255778;255779;255780;255781;255782;255783;255784;255785 157015;157016;157017;157018;157019;157020;157021;157022;157023;157024;157025;157026;157027;157028 157017 12 LSGEDSGR Unmodified 819.37226 0.37226009 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.603 6.4688 2 0.0001799 1600 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.01 130.22 1061600000 81892000 82897000 93958000 0 0 0 43583000 55670000 45240000 0 0 0 84368000 75676000 72493000 0 0 0 151400000 143690000 130750000 0 0 0 13602 937 13265 255786;255787;255788;255789;255790;255791;255792;255793;255794;255795;255796;255797 157029;157030;157031;157032;157033;157034;157035 157034 7 LSGELTMAADK Unmodified 1134.5591 0.55907458 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 22.402 22.251 2 0.0021028 8629 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 73.841 57.508 217450000 0 0 0 0 0 0 45957000 46575000 49342000 0 1160400 0 16379000 16954000 21903000 0 0 0 5777600 6106800 7298400 0 0 0 13603 1861 13266 255798;255799;255800;255801;255802;255803;255804;255805;255806;255807 157036 157036 1 LSGETLEHAVEVSK Unmodified 1497.7675 0.76748745 1396 P32680 yjaG Uncharacterized protein YjaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 24.798 23.806 2;3 2.3312E-26 10827 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 230.81 225.03 989150000 92794000 75406000 70966000 0 620940 0 87608000 88488000 82062000 0 0 0 70832000 66395000 63618000 0 0 0 95058000 101180000 94125000 0 0 0 13604 1396 13267 255808;255809;255810;255811;255812;255813;255814;255815;255816;255817;255818;255819;255820;255821;255822;255823;255824;255825;255826;255827;255828;255829;255830;255831;255832 157037;157038;157039;157040;157041;157042;157043;157044;157045;157046;157047;157048;157049;157050;157051;157052;157053;157054;157055;157056 157038 20 LSGEVAQHTLR Unmodified 1209.6466 0.64658446 1255 P25519 hflX GTPase HflX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 12.925 13.639 2;3 1.5532E-07 4262 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 178.55 144.75 81866000 24157000 17120000 19135000 0 0 0 0 6183600 2154500 1429500 0 714030 0 4682900 3390800 0 0 0 0 0 2898500 0 0 0 13605 1255 13268 255833;255834;255835;255836;255837;255838;255839;255840;255841;255842;255843;255844;255845 157057;157058;157059;157060 157058 4 LSGFGNFDLR Unmodified 1124.5615 0.56145784 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.588 38.746 2 3.4007E-07 18869 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.79 116.2 1856100000 268310000 260720000 253470000 0 0 0 148050000 143980000 148860000 12271000 12062000 0 132090000 121740000 116000000 0 0 0 115320000 115460000 0 0 0 7763200 13606 290 13269 255846;255847;255848;255849;255850;255851;255852;255853;255854;255855;255856;255857;255858;255859 157061;157062;157063;157064;157065;157066;157067;157068 157066 6 LSGGFLFK Unmodified 867.48544 0.48543935 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.923 34.37 2 0.00094389 16515 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.54 80.736 1319500000 35445000 35839000 25313000 15096000 16690000 15818000 119710000 116080000 122500000 61275000 63771000 62409000 78812000 71822000 73869000 17817000 11947000 11983000 103810000 92346000 84427000 28187000 26335000 28217000 13607 1742 13270 255860;255861;255862;255863;255864;255865;255866;255867;255868;255869;255870;255871;255872;255873;255874;255875;255876;255877;255878;255879;255880;255881;255882;255883 157069;157070;157071;157072;157073;157074;157075;157076;157077;157078;157079;157080;157081;157082;157083;157084;157085;157086;157087;157088;157089;157090;157091;157092 157087 24 LSGGSRRICSR Unmodified 1247.6517 0.65168661 22 CON__Q7Z3Y9 yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 44.175 42.704 2 0.11448 20783 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 55.37 28.986 101870000 17706000 14530000 18742000 0 0 0 0 3401100 3804900 0 0 0 5381100 4828800 4551100 0 0 0 10696000 9217300 9011500 0 0 0 + 13608 22 13271 255884;255885;255886;255887;255888;255889;255890;255891;255892;255893;255894 157093;157094;157095 157095 3 LSGHALK Unmodified 724.42317 0.42317345 1231 P23917 mak Fructokinase yes yes 0 0 0 By matching By MS/MS 1 1 8.5668 9.3471 2 0.073803 2009 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 58.687 56.894 9964200 0 0 0 0 0 0 0 4599500 5364800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13609 1231 13272 255895;255896 157096 157096 1 LSGLVLDEADEMLR Unmodified 1559.7865 0.78650834 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.886 48.466 2 1.8963E-06 23433 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 155.48 127.28 269400000 30495000 27567000 29192000 2882300 3526800 3313100 11198000 9679000 12323000 6193800 5577400 5019600 15738000 14424000 10677000 0 0 0 25449000 22449000 20476000 3689100 4979500 4550700 13610 544 13273 255897;255898;255899;255900;255901;255902;255903;255904;255905;255906;255907;255908;255909;255910;255911;255912;255913;255914;255915;255916;255917 157097;157098;157099;157100;157101;157102;157103 157098 7 LSGNTASGLPAR Unmodified 1142.6044 0.60438529 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.754 15.564 2 7.974E-12 5223 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 190.88 152.09 1039800000 83933000 103810000 90450000 0 671160 687660 105260000 98260000 86770000 0 0 0 86525000 64265000 51455000 0 0 0 89085000 79050000 99583000 0 0 0 13611 1076 13274 255918;255919;255920;255921;255922;255923;255924;255925;255926;255927;255928;255929;255930;255931 157104;157105;157106;157107;157108;157109;157110;157111;157112;157113;157114;157115 157107 12 LSGQHNYTNALAALALADAAGLPR Unmodified 2407.2608 0.26080615 1098 P14900 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 50.815 49.489 3 4.6568E-07 23272 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 106.93 102.17 352890000 27403000 27397000 25479000 0 701260 0 20067000 24889000 19077000 0 0 0 32234000 31212000 27506000 0 0 0 37150000 37237000 42540000 0 0 0 13612 1098 13275 255932;255933;255934;255935;255936;255937;255938;255939;255940;255941;255942;255943;255944 157116;157117;157118;157119;157120;157121;157122;157123;157124;157125;157126;157127 157125 12 LSGSVTVGETPVIR Unmodified 1413.7827 0.78274359 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 3 1 1 1 3 1 3 1 1 1 2 4 4 1 1 1 2 2 1 1 1 1 30.49 29.157 2 1.2646E-29 13513 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 237.93 219.15 15251000000 1813500000 1696600000 1685200000 21835000 20050000 21210000 1851200000 0 1667000000 13958000 13413000 13560000 1242400000 1197700000 1167700000 8374100 5081100 6977900 6563200 1434300000 1336400000 9383000 9062000 9181300 13613 1741 13276 255945;255946;255947;255948;255949;255950;255951;255952;255953;255954;255955;255956;255957;255958;255959;255960;255961;255962;255963;255964;255965;255966;255967;255968;255969;255970;255971;255972;255973;255974;255975;255976;255977;255978;255979;255980;255981;255982;255983;255984;255985;255986 157128;157129;157130;157131;157132;157133;157134;157135;157136;157137;157138;157139;157140;157141;157142;157143;157144;157145;157146;157147;157148;157149;157150;157151;157152;157153;157154;157155;157156;157157;157158;157159;157160;157161;157162;157163;157164;157165;157166 157133 39 LSGVEVSGNLAGHSAEIEQLTK Unmodified 2238.1492 0.14919002 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.248 33.68 3 1.8685E-15 16106 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 148.75 135.69 288110000 16286000 16540000 18876000 2686600 3908100 3040700 12326000 14264000 15132000 8880100 7943800 6670500 12018000 14989000 14906000 4266500 3386000 0 27684000 31837000 30849000 6793600 7697500 7126800 13614 486 13277 255987;255988;255989;255990;255991;255992;255993;255994;255995;255996;255997;255998;255999;256000;256001;256002;256003;256004;256005;256006;256007;256008;256009 157167;157168;157169;157170;157171;157172;157173;157174;157175;157176;157177;157178;157179;157180;157181;157182;157183;157184 157175 17 LSGYAGSAGVAK Unmodified 1079.5611 0.56112349 1250 P24554 radA DNA repair protein RadA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.9 15.299 2 0.0052653 4239 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 77.379 57.892 28766000 4486400 3560700 0 0 0 0 0 1788700 0 2845200 2521600 2890200 0 0 0 0 0 0 3752100 2257200 0 1398100 1792500 1473200 13615 1250 13278 256010;256011;256012;256013;256014;256015;256016;256017;256018;256019;256020 157185 157185 1 LSGYTEDEK Unmodified 1040.4662 0.46622005 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.371 12.961 2 0.00025028 3687 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.19 121.5 273210000 17897000 19220000 22499000 0 0 0 27786000 29340000 26658000 2137600 1517200 1559300 18309000 18106000 15954000 3315700 2903900 2468700 22180000 21544000 19813000 0 0 0 13616 536 13279 256021;256022;256023;256024;256025;256026;256027;256028;256029;256030;256031;256032;256033;256034;256035;256036;256037;256038 157186;157187;157188;157189;157190;157191 157189 6 LSGYTEDEKLNIAK Unmodified 1579.8094 0.80935227 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 21.548 21.586 2;3 9.2702E-20 8751 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 220.25 210.7 1006100000 61223000 62881000 55872000 988560 732840 656910 12223000 9397500 64473000 45049000 34921000 20763000 50037000 49761000 40334000 91323000 69110000 72810000 60063000 72289000 64462000 21130000 20749000 24803000 13617 536 13280 256039;256040;256041;256042;256043;256044;256045;256046;256047;256048;256049;256050;256051;256052;256053;256054;256055;256056;256057;256058;256059;256060;256061;256062;256063;256064;256065;256066;256067;256068;256069;256070;256071;256072;256073;256074;256075;256076;256077;256078;256079;256080;256081 157192;157193;157194;157195;157196;157197;157198;157199;157200;157201;157202;157203;157204;157205;157206;157207;157208;157209;157210;157211;157212;157213;157214;157215;157216;157217;157218;157219;157220;157221;157222;157223;157224 157216 33 LSGYTEDEKLNIAKR Unmodified 1735.9105 0.9104633 536 P0A9M0 lon Lon protease yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 17.785 17.74 3 1.4048E-07 5058 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 131.53 127.14 13138000 0 0 0 0 0 0 0 0 0 0 2377800 0 0 0 0 4860700 3469400 2430000 0 0 0 0 0 0 13618 536 13281 256082;256083;256084;256085 157225;157226;157227 157225 3 LSHGALPVHLIEATAPESHAHPGFDGR Unmodified 2815.4154 0.41540931 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 27.304 26.166 5 0.080987 11402 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 34.125 34.106 149070000 13352000 12035000 10192000 0 0 0 22759000 17127000 0 0 0 0 10594000 11657000 0 0 0 0 17872000 19170000 14309000 0 0 0 13619 1259 13282 256086;256087;256088;256089;256090;256091;256092;256093;256094;256095 157228;157229;157230 157230 0 LSHNIATLK Unmodified 995.57638 0.57637963 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.311 14.008 2 1.3114E-05 4175 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 162.49 92.495 990940000 101330000 75721000 101660000 1237800 0 0 80470000 76360000 79704000 0 1830400 2331700 82987000 80746000 81975000 2629800 0 0 80719000 77029000 63171000 0 0 1029900 13620 902 13283 256096;256097;256098;256099;256100;256101;256102;256103;256104;256105;256106;256107;256108;256109;256110;256111;256112 157231;157232;157233;157234;157235;157236;157237;157238;157239 157233 9 LSHVGQQVTLCGWVNR Unmodified 1852.9366 0.93663524 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 30.58 29.202 2;3 7.9396E-76 13033 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 338.34 332.86 3266300000 191110000 208160000 191760000 962810 1033300 1317600 277490000 288110000 357140000 0 0 0 245530000 349810000 263140000 0 0 0 273450000 290120000 327190000 0 0 0 13621 1189 13284 256113;256114;256115;256116;256117;256118;256119;256120;256121;256122;256123;256124;256125;256126;256127;256128;256129;256130;256131;256132;256133;256134;256135;256136;256137;256138;256139 157240;157241;157242;157243;157244;157245;157246;157247;157248;157249;157250;157251;157252;157253;157254;157255;157256;157257;157258;157259;157260;157261;157262;157263 157263 24 LSIAYGIAQAMHR Unmodified 1429.75 0.75000367 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 3 3 3 1 1 2 3 2 3 1 1 1 2 3 3 2 2 2 36.351 34.724 2;3 4.6718E-24 17101 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 239.49 194.32 6101700000 443760000 454180000 428030000 5978600 6837700 5981400 597810000 562380000 574250000 6302800 5869500 7267100 471910000 440470000 396790000 4014000 2873800 2427400 546640000 559790000 558670000 6612100 6279200 6619000 13622 869 13285 256140;256141;256142;256143;256144;256145;256146;256147;256148;256149;256150;256151;256152;256153;256154;256155;256156;256157;256158;256159;256160;256161;256162;256163;256164;256165;256166;256167;256168;256169;256170;256171;256172;256173;256174;256175;256176;256177;256178;256179;256180;256181;256182;256183;256184;256185;256186;256187;256188;256189;256190 157264;157265;157266;157267;157268;157269;157270;157271;157272;157273;157274;157275;157276;157277;157278;157279;157280;157281;157282;157283;157284;157285;157286;157287;157288;157289;157290;157291;157292;157293;157294;157295;157296;157297;157298 157268 34 LSIISFHSLEDR Unmodified 1415.7409 0.74087877 1619 P60390 rsmH Ribosomal RNA small subunit methyltransferase H yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.2 35.808 3 3.8799E-07 17396 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.39 103.44 174850000 17215000 20799000 20023000 0 0 0 19217000 15066000 15810000 0 0 2759700 8913900 11070000 6617800 2393700 2386700 2191200 0 15683000 12453000 0 0 2249700 13623 1619 13286 256191;256192;256193;256194;256195;256196;256197;256198;256199;256200;256201;256202;256203;256204;256205;256206;256207 157299;157300;157301;157302;157303;157304 157303 6 LSILLLEK Unmodified 927.60047 0.60046911 711 P0ACA1 yibF Uncharacterized GST-like protein YibF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.065 41.554 2 0.00014978 20167 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.75 155.75 105330000 11480000 11042000 12138000 0 0 0 10431000 8816200 8689300 0 0 0 4081300 3867500 3558200 0 0 0 9923500 10506000 10802000 0 0 0 13624 711 13287 256208;256209;256210;256211;256212;256213;256214;256215;256216;256217;256218;256219 157305;157306;157307;157308;157309;157310;157311;157312;157313;157314;157315 157312 11 LSINPRPPVER Unmodified 1276.7252 0.72516913 1315 P28248 dcd Deoxycytidine triphosphate deaminase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 19.791 20.281 2;3 2.4729E-05 7686 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.47 72.189 927010000 121470000 118080000 134870000 810890 532910 913770 76686000 72197000 78352000 0 0 0 44361000 40321000 38738000 0 0 0 74329000 62659000 62688000 0 0 0 13625 1315 13288 256220;256221;256222;256223;256224;256225;256226;256227;256228;256229;256230;256231;256232;256233;256234;256235;256236;256237;256238;256239;256240;256241;256242;256243;256244;256245;256246 157316;157317;157318;157319;157320;157321;157322;157323;157324;157325;157326;157327;157328;157329;157330;157331;157332;157333;157334;157335;157336;157337 157326 22 LSIPGGCCSFDLPTLHIWLHLPQAQR Unmodified 3015.5211 0.52113671 1443 P36680 zapD Cell division protein ZapD yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 53.374 51.877 4 0.0011769 25479 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.92 56.89 75518000 19634000 19608000 18758000 0 0 0 5188500 3285800 3466200 0 0 0 0 0 0 0 0 0 0 5577200 0 0 0 0 13626 1443 13289 256247;256248;256249;256250;256251;256252;256253 157338 157338 1 LSIPLITGLDFGHEQR Unmodified 1794.9628 0.96283322 1803 P76008 ldcA Murein tetrapeptide carboxypeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.128 49.872 3 5.6133E-09 23436 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 129.01 127.04 210680000 16890000 16530000 16439000 0 0 0 16887000 15926000 18405000 0 0 0 14184000 14050000 12949000 0 0 0 25772000 21488000 21159000 0 0 0 13627 1803 13290 256254;256255;256256;256257;256258;256259;256260;256261;256262;256263;256264;256265 157339;157340;157341;157342;157343;157344;157345;157346;157347;157348;157349 157347 10 LSIVDVNAGAQPLYNQQK Unmodified 1957.0269 0.026890038 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 1 2 2 38.881 37.108 2;3 1.9566E-22 14692 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 193.73 176.56 1150500000 152910000 134580000 132410000 0 0 1824100 181370000 197950000 189960000 3072200 3857100 3468400 24302000 22947000 20533000 0 0 0 22587000 29552000 29142000 0 0 0 13628 1191 13291 256266;256267;256268;256269;256270;256271;256272;256273;256274;256275;256276;256277;256278;256279;256280;256281;256282;256283;256284;256285;256286;256287;256288;256289;256290;256291;256292 157350;157351;157352;157353;157354;157355 157351 5 LSKEYDHIKDVNDLPELLK Unmodified 2268.2002 0.20016296 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.618 32.178 4 1.1965E-06 15277 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.913 88.731 276860000 15898000 15833000 12828000 0 0 0 27585000 17920000 22104000 0 0 0 22560000 17915000 21814000 0 0 0 30966000 32314000 39122000 0 0 0 13629 325 13292 256293;256294;256295;256296;256297;256298;256299;256300;256301;256302;256303;256304 157356;157357;157358;157359;157360;157361;157362;157363 157358 8 LSLAATR Unmodified 730.43374 0.43373813 77 P02943 lamB Maltoporin yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.293 16.833 2 0.00059316 4713 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 150.02 115.31 164000000 0 0 0 0 0 0 4462000 0 3672000 3740800 5690400 8189000 7098800 7201900 5526800 0 0 0 25526000 27577000 22608000 12373000 13304000 17029000 13630 77 13293 256305;256306;256307;256308;256309;256310;256311;256312;256313;256314;256315;256316;256317;256318 157364;157365;157366;157367;157368;157369 157367 4 LSLAGVR Unmodified 714.43882 0.43882351 1441 P36667 wbbL Rhamnosyltransferase WbbL yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 18.259 18.828 2 0.073945 7299 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 58.661 1.1973 87677000 0 0 0 0 0 0 19730000 18688000 0 0 0 0 0 9259200 0 0 0 0 13985000 13022000 12994000 0 0 0 13631 1441 13294 256319;256320;256321;256322;256323;256324 157370;157371 157370 2 LSLDSALPDR Unmodified 1085.5717 0.57168818 0 A0A385XJE6;P76071;P0CE58;P0CE57;P0CE56;P0CE55;P0CE54;P0CE53;P0CE52;P0CE51;P0CE50;P0CE49 insH5;insH11;insH10;insH9;insH8;insH7;insH6;insH4;insH3;insH2;insH1 Transposase InsH for insertion sequence element IS5Y;Transposase InsH for insertion sequence element IS5T;Transposase InsH for insertion sequence element IS5R;Transposase InsH for insertion sequence element IS5LO;Transposase InsH for insertion sequence element IS5K;Transposase InsH for insertion sequence element IS5I;Transposase InsH for insertion sequence element IS5H;Transposase InsH for insertion sequence element IS5F;Transposase InsH for insertion sequence element IS5D;Transposase InsH for insertion sequence element IS5B;Transposase InsH for insertion sequence element IS5A yes no 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 32.593 31.132 2 0.0053696 14103 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 73.985 64.397 62941000 0 8491800 0 907880 1332300 970880 4513900 4138300 5053000 0 0 0 4584900 0 0 0 0 0 10464000 11938000 10547000 0 0 0 13632 0 13295 256325;256326;256327;256328;256329;256330;256331;256332;256333;256334;256335;256336;256337 157372;157373;157374 157374 3 LSLEPLIAHR Unmodified 1147.6713 0.67134264 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 2 2 1 31.943 30.593 2;3 1.3504E-05 14417 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.17 137.29 503760000 94272000 87127000 84665000 0 0 0 43572000 41073000 46736000 0 0 0 15424000 14023000 15506000 0 0 0 17306000 19793000 22468000 0 0 1794400 13633 553 13296 256338;256339;256340;256341;256342;256343;256344;256345;256346;256347;256348;256349;256350;256351;256352;256353;256354;256355;256356;256357;256358;256359;256360;256361 157375;157376;157377;157378;157379;157380;157381;157382;157383;157384;157385;157386;157387;157388;157389 157381 14 LSLFDPLTGQIVSTIPR Unmodified 1856.0407 0.040749188 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.039 53.577 2 1.284E-10 26371 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.96 144.92 170770000 28122000 25607000 31488000 0 0 0 0 13724000 15092000 0 0 0 11679000 8334700 7315500 0 0 0 10183000 8462600 10762000 0 0 0 13634 426 13297 256362;256363;256364;256365;256366;256367;256368;256369;256370;256371;256372 157390 157390 1 LSLGDLDTLMPQDMINAK Unmodified 1973.9802 0.98019912 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 54.731 53.493 2;3 2.5153E-36 21377 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 287.45 249.45 5188300000 109060000 92734000 106630000 0 0 0 46612000 42953000 50525000 223710000 204580000 193610000 136650000 111450000 106760000 770910000 873860000 868750000 102550000 132900000 133970000 300130000 316130000 263850000 13635 463 13298 256373;256374;256375;256376;256377;256378;256379;256380;256381;256382;256383;256384;256385;256386;256387;256388;256389;256390;256391;256392;256393;256394;256395;256396;256397;256398;256399;256400;256401;256402;256403;256404;256405;256406;256407;256408;256409;256410;256411;256412;256413;256414 157391;157392;157393;157394;157395;157396;157397;157398;157399;157400;157401;157402;157403;157404;157405;157406;157407;157408;157409;157410;157411;157412;157413 157391 23 LSLGDLDTLMPQDMINAKPISAAVK 2 Oxidation (M) 2672.3765 0.37648912 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 2 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 44.932 44.035 3 1.7173E-10 15891 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 126.88 123.31 117360000 0 0 0 0 0 0 0 0 0 13282000 13600000 0 0 0 0 33780000 24665000 32038000 0 0 0 0 0 0 13636 463 13299 256415;256416;256417;256418;256419 157414;157415;157416;157417;157418 157416 260;261 5 LSLGDLDTLMPQDMINAKPISAAVK Oxidation (M) 2656.3816 0.38157449 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 4 5 5 2 1 8 9 7 1 1 6 6 5 50.846 49.963 2;3;4 3.4049E-40 19167 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 204.13 197.69 6126400000 3802000 0 3978300 1029200 1123300 0 6430500 4489500 0 407950000 379920000 331190000 10220000 8054500 0 1381300000 1144300000 1231700000 4971100 0 2749600 412060000 406840000 384390000 13637 463 13299 256420;256421;256422;256423;256424;256425;256426;256427;256428;256429;256430;256431;256432;256433;256434;256435;256436;256437;256438;256439;256440;256441;256442;256443;256444;256445;256446;256447;256448;256449;256450;256451;256452;256453;256454;256455;256456;256457;256458;256459;256460;256461;256462;256463;256464;256465;256466;256467;256468;256469;256470;256471;256472;256473;256474;256475;256476;256477;256478;256479;256480;256481;256482;256483;256484;256485 157419;157420;157421;157422;157423;157424;157425;157426;157427;157428;157429;157430;157431;157432;157433;157434;157435;157436;157437;157438;157439;157440;157441;157442;157443;157444;157445;157446;157447;157448;157449;157450;157451;157452;157453;157454;157455;157456;157457;157458;157459;157460;157461;157462;157463;157464;157465 157423 260;261 47 LSLGDLDTLMPQDMINAKPISAAVK Unmodified 2640.3867 0.38665987 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 5 5 5 2 3 2 6 6 7 2 3 3 4 4 5 52.987 51.93 2;3;4;5 3.4333E-40 21044 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 268.93 266.57 50637000000 224060000 186590000 172670000 0 0 0 0 3540400 93077000 5007300000 4354100000 4355800000 128350000 141180000 117820000 886900000 11802000000 11270000000 166670000 191850000 178430000 406740000 5274900000 5674300000 13638 463 13299 256486;256487;256488;256489;256490;256491;256492;256493;256494;256495;256496;256497;256498;256499;256500;256501;256502;256503;256504;256505;256506;256507;256508;256509;256510;256511;256512;256513;256514;256515;256516;256517;256518;256519;256520;256521;256522;256523;256524;256525;256526;256527;256528;256529;256530;256531;256532;256533;256534;256535;256536;256537;256538;256539;256540;256541;256542;256543;256544;256545;256546;256547;256548;256549;256550;256551;256552;256553;256554;256555;256556;256557;256558;256559 157466;157467;157468;157469;157470;157471;157472;157473;157474;157475;157476;157477;157478;157479;157480;157481;157482;157483;157484;157485;157486;157487;157488;157489;157490;157491;157492;157493;157494;157495;157496;157497;157498;157499;157500;157501;157502;157503;157504;157505;157506;157507;157508;157509;157510;157511;157512;157513;157514;157515 157489 50 LSLITNDK Unmodified 902.5073 0.50729701 1419 P33343 yehD Uncharacterized fimbrial-like protein YehD yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 22.03 21.989 2 0.00056544 9211 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.57 82.26 119400000 0 0 0 0 550900 0 25935000 29726000 26157000 0 0 0 13371000 0 0 0 0 0 11277000 12378000 0 0 0 0 13639 1419 13300 256560;256561;256562;256563;256564;256565;256566 157516;157517;157518 157518 3 LSLLNDILPVYQQVLAELAK Unmodified 2239.2828 0.28277037 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 55.854 54.302 3 0.00059496 27001 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.5 62.795 33188000 0 0 0 0 0 0 11773000 7303900 12480000 0 0 0 0 1630900 0 0 0 0 0 0 0 0 0 0 13640 1265 13301 256567;256568;256569;256570 157519;157520 157520 2 LSLNDASLFYEPESSSALGFGFR Unmodified 2506.2016 0.20161952 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.876 33.894 2;4 4.9304E-53 21501 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 249.41 235.33 269150000 32062000 28859000 33159000 0 0 0 15326000 13223000 11381000 0 0 0 8050600 14095000 9617700 35219000 21541000 26580000 10004000 10033000 0 0 0 0 13641 1633 13302 256571;256572;256573;256574;256575;256576;256577;256578;256579;256580;256581;256582;256583;256584 157521;157522;157523;157524 157521 4 LSLNYLPK Unmodified 946.54877 0.54876789 1612 P55135 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.954 31.646 2 0.042517 15292 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 61.357 39.83 51367000 4872000 4674400 3813700 0 0 0 3900200 4518400 3118700 0 1270500 0 2824600 2974000 2450500 2705500 0 2409300 4926300 3539400 3369100 0 0 0 13642 1612 13303 256585;256586;256587;256588;256589;256590;256591;256592;256593;256594;256595;256596;256597;256598;256599 157525 157525 1 LSLQYILPK Unmodified 1073.6485 0.64848194 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.198 41.691 2 0.00028369 20163 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 119.27 101.89 225870000 8320800 8113900 7254700 2630000 3159400 3033000 21404000 17800000 17751000 8195100 9472200 7325000 11055000 11569000 9755000 2334300 1739500 3989500 20009000 15747000 16929000 6155000 6336600 5797400 13643 439 13304 256600;256601;256602;256603;256604;256605;256606;256607;256608;256609;256610;256611;256612;256613;256614;256615;256616;256617;256618;256619;256620;256621;256622;256623 157526;157527;157528;157529;157530;157531;157532;157533;157534;157535;157536;157537;157538;157539;157540;157541 157535 16 LSLTFNPAHAQQK Unmodified 1453.7678 0.76776222 1837 P76223 ynjB Protein YnjB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 2 2 2 24.373 23.437 2;3 1.3835E-05 10335 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.805 82.923 227740000 6390200 8051400 6888700 0 0 0 31643000 27528000 29967000 0 0 0 21933000 21271000 19078000 0 0 0 19602000 20089000 15298000 0 0 0 13644 1837 13305 256624;256625;256626;256627;256628;256629;256630;256631;256632;256633;256634;256635;256636;256637;256638;256639;256640;256641;256642;256643;256644 157542;157543;157544;157545;157546;157547;157548;157549;157550 157546 9 LSLTGTIIVGR Unmodified 1128.6867 0.68665836 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 39.535 37.763 2 8.1656E-05 18675 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 123.35 122.03 58048000 0 0 0 0 0 0 13333000 11754000 11348000 0 0 0 6597300 6280300 7355800 0 0 0 0 0 1380500 0 0 0 13645 1097 13306 256645;256646;256647;256648;256649;256650;256651 157551;157552;157553;157554;157555;157556 157552 6 LSLTPMGTQAHEWFQAHQQISPDLANSQR Unmodified 3290.5891 0.58909294 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 41.123 39.439 4 1.763E-08 19291 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 109.45 109.24 323840000 19285000 21063000 0 0 0 0 28750000 24050000 20263000 0 0 0 28995000 33084000 27669000 0 0 0 36389000 37987000 46305000 0 0 0 13646 1148 13307 256652;256653;256654;256655;256656;256657;256658;256659;256660;256661;256662 157557;157558;157559 157557 3 LSLWTGLLATVVYNQNR Unmodified 1947.0578 0.057796236 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 55.22 53.726 3 0.0027309 26893 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 41.284 38.045 100610000 16095000 14116000 13682000 0 0 0 6356000 2882600 3986200 0 0 0 5823800 0 0 0 0 0 14701000 10513000 12458000 0 0 0 13647 161 13308 256663;256664;256665;256666;256667;256668;256669;256670;256671;256672 157560;157561;157562 157561 0 LSMAPSYFSSK Unmodified 1216.5798 0.57981002 1581 P45799 nudE ADP compounds hydrolase NudE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.546 30.189 2 0.061873 13554 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 47.894 44.485 132610000 15882000 16597000 15694000 0 0 0 5730400 9265900 6954500 0 0 0 7091400 6564200 7603600 0 0 0 11844000 14090000 15289000 0 0 0 13648 1581 13309 256673;256674;256675;256676;256677;256678;256679;256680;256681;256682;256683;256684 157563 157563 0 LSMGVQDFNK Unmodified 1137.5488 0.54884425 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 27.727 26.524 2 0.019267 12054 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 62.558 46.264 241070000 40908000 32928000 35970000 1114400 658300 0 0 27371000 27175000 0 0 0 0 0 0 0 0 0 24642000 23920000 26378000 0 0 0 13649 1387 13310 256685;256686;256687;256688;256689;256690;256691;256692;256693;256694 157564;157565 157565 0 LSMQLSIVAGELKR Unmodified 1543.8756 0.87559811 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 39.013 37.227 3 0.10627 18608 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 26.435 25.647 24735000 0 0 1726500 0 1055900 0 3905200 2998400 0 0 0 0 2477400 3072400 2050100 0 0 0 2763300 0 0 2743000 1942300 0 13650 1617 13311 256695;256696;256697;256698;256699;256700;256701;256702;256703;256704 157566 157566 0 LSNAGIR Unmodified 729.41334 0.41333704 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.602 12.435 2 0.00043229 3205 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 154.29 95.741 2693500000 179420000 180420000 7408000 0 0 0 313090000 293650000 307180000 0 0 0 216810000 214340000 195120000 0 0 0 276390000 258450000 251290000 0 0 0 13651 445 13312 256705;256706;256707;256708;256709;256710;256711;256712;256713;256714;256715;256716 157567;157568;157569;157570;157571 157570 5 LSNAQVIDVTK Unmodified 1186.6558 0.65575216 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 26.636 26.142 2 1.1304E-05 9158 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 145.75 130.09 3782000000 217230000 220010000 221490000 1651600 0 0 309900000 336090000 335970000 0 1713700 0 362940000 315430000 357590000 23072000 6143400 0 326520000 359410000 370880000 15965000 0 0 13652 288 13313 256717;256718;256719;256720;256721;256722;256723;256724;256725;256726;256727;256728;256729;256730;256731;256732;256733;256734;256735;256736 157572;157573;157574;157575;157576;157577;157578;157579;157580;157581;157582;157583;157584 157582 12 LSNAQVIDVTKMPNNGR Unmodified 1855.9574 0.95743026 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 1 By MS/MS 1 26.896 25.347 4 0.13932 11734 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 16.685 12.717 17199000 0 0 0 0 0 0 0 17199000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13653 288 13314 256737 157585 157585 1 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSAR Unmodified 3902.7786 0.77860536 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 2 2 2 2 1 2 2 2 55.775 54.679 3;4 2.1736E-37 21848 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 190.84 189.31 5961900000 0 0 0 0 0 0 5313300 0 0 532020000 428630000 365160000 0 0 4439800 899750000 1366400000 1213600000 12754000 16101000 9141800 333820000 371080000 403610000 13654 1616 13315 256738;256739;256740;256741;256742;256743;256744;256745;256746;256747;256748;256749;256750;256751;256752;256753;256754;256755;256756;256757;256758;256759;256760;256761;256762 157586;157587;157588;157589;157590;157591;157592;157593;157594;157595;157596;157597;157598;157599;157600;157601;157602;157603 157600 18 LSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSAR Oxidation (M) 3918.7735 0.77351999 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By matching By MS/MS By matching 1 1 1 55.529 55.585 3 1.6595E-22 20887 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 147.54 147.19 54471000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18659000 17093000 18720000 0 0 0 0 0 0 13655 1616 13315 256763;256764;256765 157604 157604 563 1 LSNNTACVFTGK Unmodified 1310.6289 0.62888548 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.851 21.172 2 1.1762E-11 8363 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 185.08 169.93 372020000 111550000 99315000 84958000 0 0 0 10087000 9916000 11751000 0 0 0 7986800 5502000 4839300 1527800 0 0 7131700 9187000 8267900 0 0 0 13656 26 13316 256766;256767;256768;256769;256770;256771;256772;256773;256774;256775;256776;256777;256778 157605;157606;157607;157608;157609;157610;157611;157612;157613;157614 157609 10 LSNVSQSQNDLMTR Unmodified 1591.7624 0.76241885 1090 P13458 sbcC Nuclease SbcCD subunit C yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.82 20.936 2 1.1333E-05 6911 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 106.01 99.119 51879000 5227200 3944600 3389500 0 0 0 3752400 3524600 3106000 2307900 2856400 1948600 0 4020200 0 0 0 0 5980000 4154900 4681000 1576000 1409100 0 13657 1090 13317 256779;256780;256781;256782;256783;256784;256785;256786;256787;256788;256789;256790;256791;256792;256793 157615;157616 157615 1 LSPEIAR Unmodified 784.4443 0.44430282 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 15.352 15.978 2 0.00029567 5511 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 158.53 89.144 1855900000 95892000 251020000 252320000 7345100 6790100 6431200 174720000 172720000 170340000 24973000 19765000 21171000 102010000 75438000 89470000 0 0 7712400 120510000 117740000 114500000 8068000 9223000 7775200 13658 1119 13318 256794;256795;256796;256797;256798;256799;256800;256801;256802;256803;256804;256805;256806;256807;256808;256809;256810;256811;256812;256813;256814;256815;256816;256817;256818;256819 157617;157618;157619;157620;157621;157622;157623;157624;157625;157626;157627;157628;157629;157630;157631;157632;157633 157618 17 LSPEMVSASTLAGDPITAR Unmodified 1914.9721 0.97207728 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 2 2 2 42.27 40.609 2;3 1.3909E-18 19114 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 212.17 203.65 1747500000 122510000 120250000 104810000 0 0 0 134980000 137360000 123760000 0 0 0 172310000 112870000 165870000 0 0 0 195720000 184760000 172250000 0 0 0 13659 1450 13319 256820;256821;256822;256823;256824;256825;256826;256827;256828;256829;256830;256831;256832;256833;256834;256835;256836 157634;157635;157636;157637;157638;157639;157640;157641;157642;157643;157644;157645;157646;157647;157648;157649 157645 16 LSPFFDEMQATPAPVEDIHGAR Unmodified 2427.1529 0.15289519 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 2 1 2 1 2 2 1 44.286 42.731 2;3;4 3.6042E-22 20794 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 231.13 225.41 3539000000 884740000 870070000 835230000 0 2071900 0 187940000 169560000 161740000 0 0 0 48875000 44170000 39593000 0 0 0 102420000 99407000 93191000 0 0 0 13660 1254 13320 256837;256838;256839;256840;256841;256842;256843;256844;256845;256846;256847;256848;256849;256850;256851;256852;256853;256854;256855;256856;256857;256858;256859;256860;256861;256862;256863 157650;157651;157652;157653;157654;157655;157656;157657;157658;157659;157660;157661;157662;157663;157664;157665;157666 157660 17 LSPGYTVTTGWK Unmodified 1308.6714 0.67140222 69 P02916 malF Maltose transport system permease protein MalF yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.358 29.651 2 1.8295E-05 11283 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 123.86 117.26 335450000 0 0 0 1986900 1036600 0 29960000 26144000 27526000 13322000 13384000 12670000 24449000 34332000 27632000 0 0 0 45612000 0 45033000 11349000 10804000 10212000 13661 69 13321 256864;256865;256866;256867;256868;256869;256870;256871;256872;256873;256874;256875;256876;256877;256878;256879 157667;157668;157669;157670;157671;157672;157673 157668 7 LSPIAEQLDK Unmodified 1112.6077 0.60773933 1725 P68767 pepA Cytosol aminopeptidase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.956 24.843 2 0.053007 11200 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 62.201 53.932 94895000 14782000 15955000 14372000 0 0 0 6685100 6042900 6575500 0 0 0 3142900 3274200 2808500 0 0 0 6873200 8160100 6223300 0 0 0 13662 1725 13322 256880;256881;256882;256883;256884;256885;256886;256887;256888;256889;256890;256891 157674 157674 1 LSPLHSVYVDQWDWER Unmodified 2028.9694 0.96937516 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 43.587 41.961 2;3 1.6921E-31 20536 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 295.78 292.46 2988200000 343790000 293510000 264920000 0 0 0 471220000 544860000 520870000 6119000 5991000 5356100 86175000 83705000 78456000 0 0 0 99318000 94921000 89018000 0 0 0 13663 64 13323 256892;256893;256894;256895;256896;256897;256898;256899;256900;256901;256902;256903;256904;256905;256906;256907;256908;256909;256910;256911;256912;256913;256914;256915;256916;256917;256918 157675;157676;157677;157678;157679;157680;157681;157682;157683;157684;157685;157686;157687;157688;157689;157690;157691;157692;157693;157694;157695;157696;157697;157698;157699 157689 25 LSPPAFR Unmodified 786.43882 0.43882351 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.107 22.388 2 0.0034949 9340 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.74 92.523 1126500000 56078000 49231000 52665000 0 0 0 111810000 102280000 113350000 0 0 0 112360000 113790000 116880000 0 0 0 99455000 95518000 103050000 0 0 0 13664 539 13324 256919;256920;256921;256922;256923;256924;256925;256926;256927;256928;256929;256930 157700;157701;157702;157703;157704;157705;157706;157707;157708;157709;157710;157711;157712;157713;157714;157715;157716;157717 157711 18 LSPQGTDTFAMLDAFR Unmodified 1768.8454 0.8454202 1571 P45475 yhbV Uncharacterized protein YhbV yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 52.732 51.402 2 3.4103E-06 25103 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 114.82 103.6 39205000 0 0 0 0 0 0 0 8836800 0 0 0 0 10093000 8492100 0 0 0 0 6048700 5734500 0 0 0 0 13665 1571 13325 256931;256932;256933;256934;256935 157718 157718 1 LSPSLGESSHHVCPR Unmodified 1661.7944 0.79438768 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.789 13.526 3 1.6545E-06 4077 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 102.52 101.03 210240000 24425000 36739000 34428000 0 0 3815600 21917000 0 12294000 0 5510700 5104900 0 12233000 17535000 0 0 0 20445000 0 15796000 0 0 0 13666 1183 13326 256936;256937;256938;256939;256940;256941;256942;256943;256944;256945;256946;256947 157719;157720 157720 2 LSPTLAMYR Unmodified 1050.5532 0.55320134 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.814 28.453 2 6.9009E-05 12655 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 165.11 149.67 6064200000 387680000 388930000 344730000 127940000 127730000 136180000 691540000 712830000 714840000 132130000 116130000 114810000 290470000 274130000 289580000 7854800 6768000 6257200 261790000 258450000 255210000 148210000 133380000 136620000 13667 548 13327 256948;256949;256950;256951;256952;256953;256954;256955;256956;256957;256958;256959;256960;256961;256962;256963;256964;256965;256966;256967;256968;256969;256970;256971 157721;157722;157723;157724;157725;157726;157727;157728;157729;157730;157731;157732;157733;157734;157735;157736;157737;157738 157737 18 LSPTLAMYR Oxidation (M) 1066.5481 0.54811597 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 1 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 2 24.345 23.272 2 0.0033098 10558 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.568 74.337 102620000 0 0 9817300 3266800 4899500 4939000 17264000 15941000 14938000 1957800 4707700 2090600 5496700 2629200 0 0 0 0 0 5517000 0 1924400 2748500 4478400 13668 548 13327 256972;256973;256974;256975;256976;256977;256978;256979;256980;256981;256982;256983;256984;256985;256986;256987;256988;256989;256990;256991 157739;157740;157741;157742;157743;157744 157740 333 6 LSPYDAACAGCVAHGAAADVLAAR Unmodified 2386.1158 0.11579817 1381 P31806 nnr Bifunctional NAD(P)H-hydrate repair enzyme Nnr;ADP-dependent (S)-NAD(P)H-hydrate dehydratase;NAD(P)H-hydrate epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.622 36.938 3 7.929E-07 17979 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 103.29 97.974 196320000 38252000 37196000 43864000 0 0 0 0 0 17808000 0 0 1413800 6275900 7780400 0 0 0 0 14399000 15874000 12140000 0 1321500 0 13669 1381 13328 256992;256993;256994;256995;256996;256997;256998;256999;257000;257001;257002 157745;157746;157747 157745 3 LSPYTNNIIQVWTSGTGVNK Unmodified 2191.1273 0.12733236 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 51.089 49.828 2;3 6.9346E-05 23453 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 112.02 102.97 101010000 0 0 0 0 0 0 17487000 14508000 13069000 0 0 0 9721900 10797000 11201000 0 0 0 8163200 9637600 6429400 0 0 0 13670 600 13329 257003;257004;257005;257006;257007;257008;257009;257010;257011;257012;257013;257014;257015;257016;257017;257018;257019;257020 157748;157749 157748 2 LSQAFHAHLEETHGQIER Unmodified 2102.0293 0.029349654 1177 P21362 yciF Protein YciF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 2 2 15.279 16.126 3;4 2.6586E-17 5496 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142.23 140.8 219210000 111810000 40954000 48666000 6417000 5676700 5685200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13671 1177 13330 257021;257022;257023;257024;257025;257026;257027;257028;257029;257030;257031;257032 157750;157751;157752;157753;157754;157755;157756;157757 157755 8 LSQAGAQLMTWFGVACELHR Unmodified 2274.1038 0.10377693 1179 P21367 ycaC Uncharacterized protein YcaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 1 1 1 1 1 1 1 53.096 51.709 2;3 1.2676E-46 25353 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 332.7 325.33 1950100000 456530000 430190000 346600000 0 0 0 174870000 164670000 153640000 0 12105000 0 30151000 27683000 27906000 0 0 0 45528000 41780000 38465000 0 0 0 13672 1179 13331 257033;257034;257035;257036;257037;257038;257039;257040;257041;257042;257043;257044;257045;257046;257047;257048;257049;257050;257051;257052;257053;257054;257055;257056;257057 157758;157759;157760;157761;157762;157763;157764;157765;157766;157767;157768;157769;157770;157771;157772;157773 157765 15 LSQPGGSEDQR Unmodified 1172.5422 0.54217896 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.156 11.868 2 2.8102E-07 3033 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 160.16 151.47 278660000 22310000 15625000 16500000 1344700 1651900 2616500 25484000 23347000 23040000 4539600 4093800 5148300 13715000 14997000 17311000 0 0 0 23206000 24851000 28166000 0 6686300 4028200 13673 1197 13332 257058;257059;257060;257061;257062;257063;257064;257065;257066;257067;257068;257069;257070;257071;257072;257073;257074;257075;257076;257077 157774;157775;157776;157777;157778;157779;157780;157781;157782;157783;157784;157785;157786;157787;157788;157789 157783 16 LSQQLAMTPQLQQAIR Unmodified 1824.988 0.98800211 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 37.891 36.481 2;3 5.9716E-31 12516 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 240.8 225.93 432930000 23097000 24216000 12401000 1453600 1768700 677230 0 15091000 9377400 963550 2107200 842630 0 3730600 5959400 144220000 82195000 95409000 0 3638500 4313700 0 776090 693170 13674 1249 13333 257078;257079;257080;257081;257082;257083;257084;257085;257086;257087;257088;257089;257090;257091;257092;257093;257094;257095;257096;257097;257098;257099;257100;257101;257102;257103;257104 157790;157791;157792;157793;157794;157795;157796;157797;157798;157799;157800 157794 11 LSQSGHK Unmodified 755.3926 0.3926016 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6.152 6.7768 2 0.0023399 1445 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 114.02 87.914 5057900000 109570000 110030000 77428000 529190 636570 0 103220000 86501000 94736000 480580000 309240000 267110000 103340000 95566000 75132000 763620000 459840000 358280000 143830000 163890000 134250000 353220000 313730000 453620000 13675 463 13334 257105;257106;257107;257108;257109;257110;257111;257112;257113;257114;257115;257116;257117;257118;257119;257120;257121;257122;257123;257124;257125;257126;257127;257128;257129 157801;157802;157803;157804;157805;157806;157807;157808;157809;157810;157811;157812;157813;157814;157815;157816;157817 157806 17 LSQSGHKR Unmodified 911.49371 0.49371263 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 6.3826 6.9464 2 0.00010935 1404 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 163.67 158.19 5048900000 0 0 0 2321000 2196600 2490700 0 0 0 427530000 496040000 417930000 972360 1243300 652960 1176300000 699270000 409110000 3085200 2845400 2007100 431220000 475630000 498080000 13676 463 13335 257130;257131;257132;257133;257134;257135;257136;257137;257138;257139;257140;257141;257142;257143;257144;257145;257146;257147;257148 157818;157819;157820;157821;157822;157823;157824;157825;157826;157827;157828;157829;157830;157831;157832 157823 15 LSQVDESDLTNPK Unmodified 1444.7046 0.70455285 782 P0ADC6 lptG Lipopolysaccharide export system permease protein LptG yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 22.643 21.834 2 0.051527 7588 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 47.154 43.898 18232000 0 0 0 0 0 0 0 3845800 0 3294600 2223800 0 0 0 0 0 0 0 5873900 2994300 0 0 0 0 13677 782 13336 257149;257150;257151;257152;257153 157833 157833 0 LSSLTELTAK Unmodified 1061.5968 0.5968403 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.127 25.98 2 1.4588E-05 12029 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 151.97 134.73 599220000 43252000 41366000 34744000 0 0 0 51445000 49197000 48465000 0 0 0 60758000 43123000 47312000 0 0 0 57510000 64148000 57899000 0 0 0 13678 1889 13337 257154;257155;257156;257157;257158;257159;257160;257161;257162;257163;257164;257165 157834;157835;157836;157837;157838;157839;157840;157841;157842 157834 9 LSSPATLNSR Unmodified 1044.5564 0.55637247 5 CON__P00761 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.925 16.473 2 1.5768E-05 4668 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 151.44 124.19 769430000 23067000 24090000 19233000 39351000 39827000 36799000 31646000 34350000 32028000 53363000 42777000 32894000 41886000 36342000 35206000 10233000 11217000 10419000 36012000 42794000 31963000 34761000 33676000 35491000 + 13679 5 13338 257166;257167;257168;257169;257170;257171;257172;257173;257174;257175;257176;257177;257178;257179;257180;257181;257182;257183;257184;257185;257186;257187;257188;257189 157843;157844;157845;157846;157847;157848;157849;157850;157851;157852;157853;157854;157855;157856;157857 157847 15 LSSPIEAAESSR Unmodified 1245.6201 0.62009493 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.39 22.598 2 4.0508E-05 8099 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 110.38 42.011 96907000 0 0 0 0 0 0 0 0 0 8844100 8457600 5595500 8686900 9400800 7759500 0 0 1436600 0 17364000 16832000 3765900 3635400 5129300 13680 143 13339 257190;257191;257192;257193;257194;257195;257196;257197;257198;257199;257200;257201 157858;157859;157860;157861;157862 157858 5 LSSPIMPAIAIR Unmodified 1267.7322 0.73222834 511 P0A9D4 cysE Serine acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.756 42.181 2 0.0008184 20638 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.608 95.608 255750000 39298000 35288000 33141000 0 0 0 15082000 14446000 12225000 0 0 699440 13432000 11839000 12776000 0 0 0 20748000 24325000 22450000 0 0 0 13681 511 13340 257202;257203;257204;257205;257206;257207;257208;257209;257210;257211;257212;257213;257214 157863;157864;157865;157866;157867;157868;157869;157870;157871;157872;157873;157874 157869 9 LSSTDPNLQNIPVR Unmodified 1552.8209 0.82092001 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.442 29.191 2 1.3282E-11 13518 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 177.57 168.38 878570000 80969000 99154000 68470000 0 0 453330 83843000 74853000 75062000 3410700 0 2477300 48592000 55389000 41134000 13911000 9006200 9070800 74172000 68603000 70002000 0 0 0 13682 37 13341 257215;257216;257217;257218;257219;257220;257221;257222;257223;257224;257225;257226;257227;257228;257229;257230;257231;257232 157875;157876;157877;157878;157879;157880;157881;157882;157883;157884;157885;157886;157887 157883 11 LSSTDPNLQNIPVRNEEGR Unmodified 2138.0716 0.071608399 37 P00582 polA DNA polymerase I yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 23.9 23.855 3 0.082598 7298 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 31.801 27.362 6674500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2594200 2098300 1981900 0 0 0 0 0 0 13683 37 13342 257233;257234;257235 157888 157888 1 LSSTDPNLQNIPVRNEEGRR Unmodified 2294.1727 0.17271943 37 P00582 polA DNA polymerase I yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 19.764 19.753 4 0.0017089 5693 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 59.872 51.584 12743000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4413000 4065200 4264300 0 0 0 0 0 0 13684 37 13343 257236;257237;257238 157889;157890;157891 157890 3 LSSVSHPEYIGR Unmodified 1343.6834 0.68336389 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 16.288 16.87 3 3.5901E-05 5866 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.04 97.251 662310000 111990000 100120000 86989000 0 0 0 127110000 119080000 115720000 0 0 0 0 0 0 0 0 1301300 0 0 0 0 0 0 13685 1341 13344 257239;257240;257241;257242;257243;257244;257245 157892;157893;157894 157892 3 LSTALTVAQVCGVQR Unmodified 1601.8559 0.85592531 1809 P76035 yciW Uncharacterized protein YciW yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.769 31.34 2 0.042202 14340 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 48.741 42.081 97360000 14234000 12842000 13749000 0 0 0 6953000 6406100 4301300 0 0 0 6217000 3738000 4048300 0 0 0 7921300 8938800 8010900 0 0 0 13686 1809 13345 257246;257247;257248;257249;257250;257251;257252;257253;257254;257255;257256;257257 157895;157896;157897;157898 157898 0 LSTDEVK Unmodified 790.40725 0.40724861 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.002 12.641 2 0.011962 3345 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 85.265 36.504 925400000 179250000 158670000 167840000 4121600 4140600 4746900 48935000 38626000 32426000 0 16311000 13973000 48060000 36126000 0 0 15993000 16905000 42319000 43791000 38289000 4868500 5354600 4642400 13687 297 13346 257258;257259;257260;257261;257262;257263;257264;257265;257266;257267;257268;257269;257270;257271;257272;257273;257274;257275;257276;257277;257278 157899;157900;157901;157902;157903 157902 5 LSTLEVMK Unmodified 919.50485 0.50485417 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.157 24.158 2 0.001419 10563 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.01 81.875 462960000 41870000 45389000 45280000 0 0 0 39827000 32313000 38678000 5069900 4750800 6132000 26326000 22923000 27981000 3686500 2501900 2687100 30664000 36227000 31164000 4264500 7573600 7654600 13688 944 13347 257279;257280;257281;257282;257283;257284;257285;257286;257287;257288;257289;257290;257291;257292;257293;257294;257295;257296;257297;257298;257299 157904;157905;157906;157907;157908;157909;157910 157908 7 LSTLYQLPTMQR Unmodified 1449.765 0.76498503 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.721 38.047 2 0.00046168 18845 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 100.48 92.242 93656000 12836000 7235500 8703600 0 0 0 6401600 6824900 7086900 0 0 0 6146900 5478700 5283500 0 0 0 9902500 10198000 7557300 0 0 0 13689 1355 13348 257300;257301;257302;257303;257304;257305;257306;257307;257308;257309;257310;257311 157911;157912 157911 2 LSTMLNVFGLH Unmodified 1230.6431 0.64307898 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 52.32 51.223 2 8.7833E-05 25024 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 122.18 118.23 166410000 5948400 4984100 3123000 0 0 0 0 6512200 0 0 0 0 10790000 12126000 11151000 2613700 0 0 37382000 35092000 36690000 0 0 0 13690 865 13349 257312;257313;257314;257315;257316;257317;257318;257319;257320;257321;257322 157913;157914;157915;157916;157917;157918;157919 157914 2 LSTRPEK Unmodified 829.46577 0.46576654 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 6.1652 7.0319 2 0.0060989 1365 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.59 27.131 792010000 116180000 122350000 90776000 50164 0 0 254600 0 0 0 0 0 97275000 80453000 86999000 0 0 0 81017000 66900000 49764000 0 0 0 13691 445 13350 257323;257324;257325;257326;257327;257328;257329;257330;257331;257332;257333 157920;157921;157922;157923;157924;157925;157926;157927;157928 157920 8 LSVAMMGR Unmodified 863.43573 0.43572874 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.058 24.069 2 0.00018212 10677 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.88 145.2 1082700000 49958000 55187000 45621000 0 0 0 85388000 75822000 84340000 0 0 0 101200000 93890000 116050000 0 0 0 126280000 129600000 119380000 0 0 0 13692 1489 13351 257334;257335;257336;257337;257338;257339;257340;257341;257342;257343;257344;257345 157929;157930;157931;157932;157933;157934;157935;157936;157937;157938;157939;157940 157935 12 LSVEWMNELSHWPNLNVLLTR Unmodified 2550.3053 0.3053135 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.009 53.899 3 4.6625E-07 21826 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 102.6 83.562 174760000 0 0 0 2419900 0 2847900 0 0 0 11620000 10557000 9587900 14390000 12364000 0 7985300 19743000 26410000 0 31023000 15179000 0 5701900 4929300 13693 1781 13352 257346;257347;257348;257349;257350;257351;257352;257353;257354;257355;257356;257357;257358;257359 157941;157942 157942 2 LSVFKPIAQPR Unmodified 1254.7448 0.74484194 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 24.918 23.838 2;3 3.7734E-07 10287 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 177.97 177.53 8833000000 542660000 467640000 450120000 6013900 4196400 4968600 926290000 967270000 939240000 9935300 8969300 58998000 788980000 752060000 798460000 2264500 0 0 731850000 678200000 677100000 6527500 4885200 6413600 13694 539 13353 257360;257361;257362;257363;257364;257365;257366;257367;257368;257369;257370;257371;257372;257373;257374;257375;257376;257377;257378;257379;257380;257381;257382;257383;257384;257385;257386;257387;257388;257389;257390;257391;257392;257393;257394;257395;257396;257397;257398;257399 157943;157944;157945;157946;157947;157948;157949;157950;157951;157952;157953;157954;157955;157956;157957;157958;157959;157960;157961;157962;157963;157964;157965;157966;157967;157968;157969;157970;157971;157972 157966 30 LSVHFGDESAPFR Unmodified 1460.7048 0.70482762 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 1 1 1 1 1 1 1 32.21 31.013 2;3 5.2872E-06 14540 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 117.03 114.08 161730000 41051000 32877000 43787000 7420000 5355400 1478600 0 0 0 0 0 0 3264100 0 3019900 720110 0 0 8318800 7179500 7258100 0 0 0 13695 592 13354 257400;257401;257402;257403;257404;257405;257406;257407;257408;257409;257410;257411;257412;257413;257414;257415 157973;157974;157975;157976;157977;157978 157978 4 LSVLHGINAPEFFDK Unmodified 1685.8777 0.8777066 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 1 2 2 2 2 2 2 1 1 2 42.375 40.589 2;3 4.2346E-06 20233 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.007 88.468 440890000 14793000 13490000 13903000 7077600 5031700 6405800 45513000 46850000 46935000 0 0 1805000 31524000 29682000 28733000 0 0 0 39866000 40293000 39239000 9075600 9950400 10717000 13696 324 13355 257416;257417;257418;257419;257420;257421;257422;257423;257424;257425;257426;257427;257428;257429;257430;257431;257432;257433;257434;257435;257436;257437;257438;257439;257440;257441;257442;257443;257444;257445 157979;157980;157981;157982;157983;157984;157985;157986;157987;157988;157989;157990;157991;157992;157993;157994;157995;157996 157980 18 LSVMHGAVK Unmodified 940.51642 0.51642191 1677 P64488 yeaR Uncharacterized protein YeaR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 13.116 13.815 2 0.0019607 4218 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 86.833 42.141 39330000 13791000 13094000 12444000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13697 1677 13356 257446;257447;257448 157997;157998;157999 157998 3 LSVRPAHLAR Unmodified 1118.6673 0.66726032 630 P0AB55 yciI Protein YciI yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.154 12.986 2;3 0.00011352 3737 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.38 98.168 1400800000 112920000 119760000 115320000 0 0 0 163110000 161340000 155530000 0 0 0 91138000 97135000 96954000 0 0 0 120200000 79615000 87803000 0 0 0 13698 630 13357 257449;257450;257451;257452;257453;257454;257455;257456;257457;257458;257459;257460;257461;257462;257463;257464;257465;257466;257467;257468;257469;257470;257471;257472 158000;158001;158002;158003;158004;158005;158006;158007;158008;158009;158010;158011;158012;158013;158014;158015;158016 158012 17 LSVSVLVEEDGKR Unmodified 1429.7777 0.77765821 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 2 1 2 28.665 27.453 3 0.011539 11968 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 43.813 42.668 166540000 19311000 14047000 18132000 0 0 0 21466000 22513000 18870000 0 0 0 9343700 15264000 11161000 0 0 0 0 0 16437000 0 0 0 13699 1019 13358 257473;257474;257475;257476;257477;257478;257479;257480;257481;257482;257483;257484;257485;257486;257487;257488 158017;158018;158019;158020;158021;158022;158023;158024;158025;158026;158027 158024 1 LSVYDNLMAVLQIRDDLSAEQREDR Unmodified 2948.4662 0.46618384 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 54.068 52.657 4 0.022474 19253 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 41.084 38.255 37273000 0 0 0 7016300 6257400 6646000 0 0 0 7264500 0 10089000 0 0 0 0 0 0 0 0 0 0 0 0 13700 559 13359 257489;257490;257491;257492;257493 158028;158029 158028 2 LSWNGGQLISK Unmodified 1201.6455 0.64552182 1804 P76010 ycgR Flagellar brake protein YcgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 33.352 31.957 2 0.0026717 15239 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.893 46.153 38952000 12908000 10965000 13070000 0 975820 1033800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13701 1804 13360 257494;257495;257496;257497;257498 158030;158031;158032 158030 3 LSYDTEASIAK Unmodified 1196.5925 0.5924832 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 4 1 1 1 1 4 2 1 1 1 1 1 4 3 1 1 1 1 1 2 1 1 1 22.564 22.255 2 5.0073E-05 9611 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.38 127.17 11803000000 820080000 680690000 695250000 4359300 4017900 3196600 1184300000 1134300000 1063900000 4181300 3310600 3015500 966940000 974250000 993030000 1829300 816650 1033600 1034100000 1144300000 1080300000 2142900 2013300 1491500 13702 402 13361 257499;257500;257501;257502;257503;257504;257505;257506;257507;257508;257509;257510;257511;257512;257513;257514;257515;257516;257517;257518;257519;257520;257521;257522;257523;257524;257525;257526;257527;257528;257529;257530;257531;257532;257533;257534;257535;257536;257537 158033;158034;158035;158036;158037;158038;158039;158040;158041;158042;158043;158044;158045;158046;158047;158048;158049;158050;158051;158052;158053;158054;158055;158056;158057;158058;158059;158060;158061;158062;158063;158064;158065;158066;158067;158068;158069;158070;158071;158072;158073;158074;158075;158076;158077;158078 158034 45 LSYTGEVK Unmodified 895.4651 0.46509784 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.447 16.238 2 0.0010158 5261 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.5 106.09 4646500000 271260000 262670000 267190000 700820 653320 0 486160000 495810000 409400000 0 0 0 441540000 366370000 389260000 0 0 0 453780000 420520000 380600000 0 599740 0 13703 402 13362 257538;257539;257540;257541;257542;257543;257544;257545;257546;257547;257548;257549;257550;257551;257552 158079;158080;158081;158082;158083;158084;158085;158086;158087;158088;158089;158090 158088 12 LTAADYEDNVAQDK Unmodified 1551.7053 0.70528113 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 22.543 22.24 2 1.8861E-20 9326 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 223.87 214.98 333630000 120990000 97127000 115510000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13704 1888 13363 257553;257554;257555 158091;158092;158093 158092 3 LTAADYEDNVAQDKR Unmodified 1707.8064 0.80639216 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 17.98 18.611 2;3 1.3756E-56 6923 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 307.03 287.9 810350000 283430000 273910000 250510000 0 952610 1545800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13705 1888 13364 257556;257557;257558;257559;257560;257561;257562;257563 158094;158095;158096;158097;158098;158099 158095 6 LTAAPGNGASIGGLK Unmodified 1325.7303 0.73031409 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.186 23.285 2 8.9863E-05 9838 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.97 106.93 338920000 27590000 27042000 22046000 0 534420 0 34836000 39450000 25108000 0 0 0 20547000 21101000 23964000 0 0 0 29602000 37038000 30061000 0 0 0 13706 1450 13365 257564;257565;257566;257567;257568;257569;257570;257571;257572;257573;257574;257575;257576 158100;158101;158102;158103;158104;158105;158106 158105 4 LTADQTQYHFLSGFTAK Unmodified 1926.9476 0.94757708 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 37.471 35.694 2;3 1.1354E-103 17552 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 363.82 346.71 8035500000 1088900000 1104600000 939200000 3008800 3211400 3134500 584950000 571100000 565680000 1586100 1779000 1662000 492530000 489260000 494630000 0 0 0 621050000 461000000 607260000 0 987530 0 13707 1195 13366 257577;257578;257579;257580;257581;257582;257583;257584;257585;257586;257587;257588;257589;257590;257591;257592;257593;257594;257595;257596;257597;257598;257599;257600;257601;257602;257603;257604;257605;257606;257607 158107;158108;158109;158110;158111;158112;158113;158114;158115;158116;158117;158118;158119;158120;158121;158122;158123;158124;158125;158126;158127;158128;158129;158130;158131 158112 25 LTAEGVK Unmodified 716.40685 0.40685468 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 3 3 3 1 1 2 2 2 2 2 2 3 3 3 2 2 3 2 2 2 2 2 3 12.504 13.112 2 0.010377 3295 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.866 10.02 11301000000 740700000 637000000 641740000 43609000 29168000 38692000 1010900000 989670000 975240000 54520000 48919000 43561000 930800000 872930000 739330000 51016000 44321000 46412000 1111900000 1072000000 1020000000 55318000 51879000 51487000 13708 1299 13367 257608;257609;257610;257611;257612;257613;257614;257615;257616;257617;257618;257619;257620;257621;257622;257623;257624;257625;257626;257627;257628;257629;257630;257631;257632;257633;257634;257635;257636;257637;257638;257639;257640;257641;257642;257643;257644;257645;257646;257647;257648;257649;257650;257651;257652;257653;257654;257655;257656;257657;257658;257659;257660;257661 158132;158133;158134;158135;158136;158137;158138;158139 158132 8 LTAEIVAR Unmodified 871.51272 0.51271674 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 19.751 20.153 2 3.7226E-05 7639 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 173.59 139.41 619300000 128800000 125330000 119140000 0 0 0 51374000 46942000 49878000 0 2379600 0 12900000 12112000 0 0 0 0 22897000 22379000 25167000 0 0 0 13709 1194 13368 257662;257663;257664;257665;257666;257667;257668;257669;257670;257671;257672;257673;257674 158140;158141;158142;158143;158144;158145;158146;158147;158148;158149;158150;158151 158148 12 LTAEPVR Unmodified 784.4443 0.44430282 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 12.729 13.332 2 0.11613 2893 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 60.788 28.317 71702000 13701000 9817800 10198000 1694500 1465400 0 0 0 0 14704000 0 12952000 0 0 0 0 0 0 0 0 0 7168400 0 0 13710 326 13369 257675;257676;257677;257678;257679;257680;257681;257682 158152 158152 0 LTAFEYTIMETLIR Unmodified 1699.8855 0.8854941 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 55.426 54.169 2;3 1.1175E-14 20740 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 230.95 224.76 1635100000 164760000 139800000 146710000 4176900 5628600 6401800 119770000 112530000 110480000 10011000 7632300 7505500 108310000 115460000 105230000 20705000 33805000 20008000 144600000 123590000 123250000 2975800 0 1713900 13711 1214 13370 257683;257684;257685;257686;257687;257688;257689;257690;257691;257692;257693;257694;257695;257696;257697;257698;257699;257700;257701;257702;257703;257704;257705;257706;257707;257708;257709;257710;257711;257712;257713;257714;257715;257716;257717;257718;257719;257720;257721;257722;257723;257724;257725;257726;257727 158153;158154;158155;158156;158157;158158;158159;158160;158161;158162;158163;158164;158165;158166;158167;158168;158169;158170;158171;158172;158173;158174 158155 21 LTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSK Unmodified 4000.0438 0.043809015 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 3 4 2 2 3 3 3 3 2 2 2 1 1 1 2 2 3 3 4 3 54.612 53.259 3;4;5 2.2842E-48 26380 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 219.81 218.5 12658000000 360730000 211510000 351910000 1616200000 1709000000 1744300000 264820000 274160000 311580000 119950000 99230000 91959000 200210000 173970000 167540000 31014000 30696000 33972000 384540000 349360000 371220000 1249800000 1266400000 1243900000 13712 133 13371 257728;257729;257730;257731;257732;257733;257734;257735;257736;257737;257738;257739;257740;257741;257742;257743;257744;257745;257746;257747;257748;257749;257750;257751;257752;257753;257754;257755;257756;257757;257758;257759;257760;257761;257762;257763;257764;257765;257766;257767;257768;257769;257770;257771;257772;257773;257774;257775;257776;257777;257778;257779;257780;257781;257782;257783;257784 158175;158176;158177;158178;158179;158180;158181;158182;158183;158184;158185;158186;158187;158188;158189;158190;158191;158192;158193;158194;158195;158196;158197;158198;158199;158200;158201;158202;158203;158204;158205;158206;158207;158208;158209;158210;158211;158212;158213;158214;158215;158216;158217;158218;158219;158220 158181 46 LTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSK Oxidation (M) 4016.0387 0.038723637 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 2 2 1 1 1 1 1 1 2 2 2 54.333 52.93 3;4 3.2203E-23 19423 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 148.1 146.73 444590000 6513900 0 0 40842000 103320000 101550000 0 0 6274700 9172700 8393400 0 0 0 5998800 0 0 0 0 17755000 9461400 48749000 50718000 35844000 13713 133 13371 257785;257786;257787;257788;257789;257790;257791;257792;257793;257794;257795;257796;257797;257798;257799;257800;257801;257802 158221;158222;158223;158224;158225;158226;158227;158228 158225 40 8 LTAGLEQKR Unmodified 1014.5822 0.58219329 1992 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 1 1 13.559 13.625 2 0.00067501 3319 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 107.66 81.921 84076000 0 0 0 0 0 0 0 0 0 7178800 3132900 0 0 0 0 22575000 21496000 22609000 0 0 0 3169300 3915200 0 + 13714 1992 13372 257803;257804;257805;257806;257807;257808;257809;257810;257811;257812 158229;158230;158231 158229 3 LTAHFYDR Unmodified 1021.4981 0.49812931 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.697 16.505 2 0.0074509 5322 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 83.313 78.957 128090000 12736000 13499000 12075000 0 0 0 13165000 10348000 11282000 0 0 0 8814000 9222900 7680900 0 0 0 10371000 9876800 9015300 0 0 0 13715 1246 13373 257813;257814;257815;257816;257817;257818;257819;257820;257821;257822;257823;257824 158232;158233;158234 158233 3 LTALGDELR Unmodified 986.53966 0.53965977 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.826 25.678 2 7.9632E-06 11949 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.57 95.153 3389000000 381110000 339230000 293840000 0 0 0 305840000 300650000 265170000 0 0 0 201470000 183770000 201760000 0 0 0 338510000 292120000 285550000 0 0 0 13716 58 13374 257825;257826;257827;257828;257829;257830;257831;257832;257833;257834;257835;257836 158235;158236;158237;158238;158239;158240;158241;158242;158243;158244 158235 9 LTAMGVGER Unmodified 932.47495 0.47495102 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.362 18.032 2 0.0001886 6273 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 127.56 114.58 1310800000 140410000 136510000 154830000 1188900 983780 1193500 0 0 0 1531100 0 0 157670000 0 152790000 0 0 0 188170000 189680000 185870000 0 0 0 13717 170 13375 257837;257838;257839;257840;257841;257842;257843;257844;257845;257846;257847;257848 158245;158246;158247;158248;158249;158250;158251;158252 158252 2 LTAMGVGERK Unmodified 1060.5699 0.56991404 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By MS/MS 1 12.289 12.302 3 0.082887 2726 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 28.956 0 2242700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2242700 0 0 0 0 0 0 13718 170 13376 257849 158253 158253 0 LTAPESNLEVSYQNYHR Unmodified 2019.965 0.96501806 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 3 3 1 1 1 3 3 3 2 2 2 2 2 3 1 1 1 3 3 3 1 2 1 33.324 32.026 2;3 1.3452E-31 9895 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 195.54 190.08 2334300000 97911000 80701000 76399000 15734000 16313000 10913000 233370000 216750000 211670000 177550000 145600000 136120000 118090000 95541000 104750000 14953000 9826600 10290000 158520000 149670000 166140000 26908000 28540000 31998000 13719 1944 13377 257850;257851;257852;257853;257854;257855;257856;257857;257858;257859;257860;257861;257862;257863;257864;257865;257866;257867;257868;257869;257870;257871;257872;257873;257874;257875;257876;257877;257878;257879;257880;257881;257882;257883;257884;257885;257886;257887;257888;257889;257890;257891;257892;257893;257894;257895;257896;257897;257898;257899;257900 158254;158255;158256;158257;158258;158259;158260;158261;158262;158263;158264;158265;158266;158267;158268;158269;158270;158271;158272;158273;158274;158275;158276;158277;158278;158279;158280;158281;158282;158283;158284;158285;158286;158287;158288;158289 158259 35 LTARPILDIALQYR Unmodified 1641.9566 0.95662563 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 41.546 40.9 3 3.6051E-08 14492 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 137.46 126.02 29943000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12552000 0 14730000 0 0 0 2661200 0 0 13720 731 13378 257901;257902;257903 158290;158291 158291 2 LTAVKPIIIDVK Unmodified 1308.8381 0.83807362 1570 P45470 yhbO Protein YhbO yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 1 2 31.261 29.872 2;3 4.7332E-05 14270 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 117.09 117.09 387850000 79579000 58593000 69194000 0 0 0 49845000 42379000 49458000 0 0 0 5811400 4474200 4285100 0 0 0 8853500 6035800 9345400 0 0 0 13721 1570 13379 257904;257905;257906;257907;257908;257909;257910;257911;257912;257913;257914;257915;257916;257917;257918;257919;257920;257921;257922 158292;158293;158294;158295;158296;158297 158296 5 LTCDIPQVKPLNIVIK Unmodified 1850.0699 0.069940826 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 2 2 2 2 2 2 40.78 39.067 2;3 0.00031601 19357 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 66.246 66.246 579770000 39116000 30195000 26634000 0 0 0 51044000 44364000 41977000 0 1072400 0 56053000 39411000 47227000 0 0 0 67919000 68250000 66511000 0 0 0 13722 1148 13380 257923;257924;257925;257926;257927;257928;257929;257930;257931;257932;257933;257934;257935;257936;257937;257938;257939;257940;257941;257942;257943;257944;257945;257946 158298;158299;158300;158301;158302;158303;158304;158305;158306;158307;158308;158309;158310 158301 12 LTDAAIK Unmodified 730.4225 0.42250475 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 2 2 2 2 12.292 13.184 2 0.007515 3948 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 90.986 9.6044 8110700000 487450000 440800000 487350000 1310500 1612200 1614800 540830000 612070000 638620000 0 0 0 793470000 476600000 719330000 0 0 0 1029600000 972250000 907830000 0 0 0 13723 385 13381 257947;257948;257949;257950;257951;257952;257953;257954;257955;257956;257957;257958;257959;257960;257961;257962;257963;257964;257965;257966 158311;158312;158313;158314;158315;158316;158317;158318;158319;158320 158313 5 LTDAGHQVNNVEVIAR Unmodified 1734.9013 0.90129559 1803 P76008 ldcA Murein tetrapeptide carboxypeptidase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 20.86 21.262 2 0.0046278 8087 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 61.435 55.942 10774000 0 0 0 0 0 0 0 0 0 0 0 0 0 3178800 0 0 0 0 3115100 4480600 0 0 0 0 13724 1803 13382 257967;257968;257969 158321 158321 1 LTDAMQGLDER Unmodified 1247.5816 0.58160094 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 24.433 23.722 2 1.6788E-07 7825 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 193.82 164.74 199760000 0 0 0 0 0 0 0 0 2507100 0 0 0 1588800 1453000 2046900 64870000 52624000 57189000 4341500 5723800 6289900 0 1125700 0 13725 1004 13383 257970;257971;257972;257973;257974;257975;257976;257977;257978;257979;257980 158322;158323;158324;158325;158326 158322 4 LTDDDMTIIEGK Oxidation (M) 1365.6334 0.63336174 1720 P68206 yjbJ UPF0337 protein YjbJ yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 3 3 2 4 3 3 1 2 1 1 1 24.22 23.31 2 1.5922E-10 9761 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.25 121.09 326460000 75236000 61936000 61369000 0 0 0 45559000 18055000 46387000 0 0 0 0 1380400 5578700 0 0 0 2931300 3929800 4094400 0 0 0 13726 1720 13384 257981;257982;257983;257984;257985;257986;257987;257988;257989;257990;257991;257992;257993;257994;257995;257996;257997;257998;257999;258000;258001;258002;258003;258004 158327;158328;158329;158330;158331;158332;158333;158334;158335;158336;158337;158338;158339;158340;158341;158342;158343;158344;158345;158346 158329 590 17 LTDDDMTIIEGK Unmodified 1349.6384 0.63844712 1720 P68206 yjbJ UPF0337 protein YjbJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 1 1 2 1 1 1 1 1 1 1 32.8 31.342 2;3 9.8516E-14 14347 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 154.35 143.82 10472000000 4048500000 2994400000 3405200000 941880 771300 736200 8908100 5493200 5671200 0 0 0 0 0 0 0 0 0 1711200 0 0 0 0 0 13727 1720 13384 258005;258006;258007;258008;258009;258010;258011;258012;258013;258014;258015;258016;258017;258018;258019;258020;258021 158347;158348;158349;158350;158351;158352;158353;158354;158355;158356;158357;158358;158359 158357 11 LTDDDMTIIEGKR Unmodified 1505.7396 0.73955814 1720 P68206 yjbJ UPF0337 protein YjbJ yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 26.036 24.839 3 0.0044906 8262 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 49.929 47.295 26766000 3228600 4912300 3315500 3619300 3318800 2941200 2632400 2798300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13728 1720 13385 258022;258023;258024;258025;258026;258027;258028;258029 158360;158361;158362 158360 3 LTDGQGR Unmodified 745.37187 0.37186616 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 7.8816 8.2472 2 0.0045644 1602 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 103.29 50.101 103360000 93126000 4737500 3463300 0 0 0 0 0 0 231160 186500 178280 0 0 0 319520 390660 218590 250240 0 0 87060 93019 77421 13729 1662 13386 258030;258031;258032;258033;258034;258035;258036;258037;258038;258039;258040;258041;258042 158363 158363 1 LTDILAAGLQQK Unmodified 1269.7293 0.72925145 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 3 2 3 2 2 2 1 1 1 2 2 2 2 3 2 2 2 36.813 35.148 2;3 1.157E-06 17314 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 102.42 90.968 2968200000 30545000 22346000 16876000 18979000 18008000 17989000 37316000 508690000 510600000 28079000 24531000 21564000 28464000 27721000 24460000 6360300 6941700 7120900 491400000 501890000 558610000 19123000 18894000 21720000 13730 1409 13387 258043;258044;258045;258046;258047;258048;258049;258050;258051;258052;258053;258054;258055;258056;258057;258058;258059;258060;258061;258062;258063;258064;258065;258066;258067;258068;258069;258070;258071;258072;258073;258074;258075;258076;258077;258078;258079;258080;258081;258082;258083;258084;258085;258086;258087;258088 158364;158365;158366;158367;158368;158369;158370;158371;158372;158373;158374;158375;158376;158377;158378;158379;158380;158381;158382;158383;158384;158385;158386;158387;158388;158389;158390;158391;158392 158373 28 LTDLAINNVNK Unmodified 1213.6667 0.6666512 1177 P21362 yciF Protein YciF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 24.5 23.527 2 1.812E-05 10382 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.4 91.209 593100000 201550000 187030000 173440000 0 746690 0 5390400 7867100 6959300 0 0 0 0 0 2377300 0 0 0 3057600 4675700 0 0 0 0 13731 1177 13388 258089;258090;258091;258092;258093;258094;258095;258096;258097;258098 158393;158394;158395 158393 3 LTDLAINNVNKK Unmodified 1341.7616 0.76161421 1177 P21362 yciF Protein YciF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 17.321 18.053 2;3 4.1345E-05 6611 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.31 98.22 246200000 82002000 87054000 74548000 0 1676400 918940 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13732 1177 13389 258099;258100;258101;258102;258103;258104;258105;258106 158396;158397;158398 158396 1 LTDMVTVGK Unmodified 962.51067 0.51066783 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.788 21.634 2 0.0011984 6471 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 90.657 62.55 223190000 13750000 0 11058000 0 4907600 6160200 30721000 20105000 20108000 21158000 16946000 11636000 19062000 18934000 0 0 0 0 0 0 22015000 0 6627200 0 13733 189 13390 258107;258108;258109;258110;258111;258112;258113;258114;258115;258116;258117;258118;258119;258120 158399;158400;158401;158402;158403;158404;158405;158406;158407;158408 158404 10 LTDNSVQSGDVLSSLVMR Unmodified 1919.9622 0.96224087 1419 P33343 yehD Uncharacterized fimbrial-like protein YehD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 47.814 46.374 2 4.3653E-55 22898 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 273.72 239.85 106020000 0 0 0 0 0 0 16325000 17156000 17102000 0 0 0 9333500 10503000 10318000 0 0 0 9008900 7854600 8421600 0 0 0 13734 1419 13391 258121;258122;258123;258124;258125;258126;258127;258128;258129 158409;158410;158411;158412;158413;158414 158411 6 LTDTPAIVSTDADEMSTQMAK Unmodified 2224.0239 0.023914429 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 38.995 37.265 2;3 1.7027E-34 18155 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 251.63 251.63 1857200000 172120000 158000000 149490000 1791500 2240100 3507900 152280000 142180000 134380000 0 1529000 903940 143420000 132940000 141250000 0 0 0 180440000 176600000 164120000 0 0 0 13735 295 13392 258130;258131;258132;258133;258134;258135;258136;258137;258138;258139;258140;258141;258142;258143;258144;258145;258146;258147;258148;258149;258150;258151;258152;258153;258154;258155;258156;258157;258158;258159 158415;158416;158417;158418;158419;158420;158421;158422;158423;158424;158425;158426;158427 158420 5 LTEAGVTSVVGLLGTDSISR Unmodified 1974.0633 0.063335123 1533 P39377 iadA Isoaspartyl dipeptidase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.711 50.464 2 5.7762E-56 24810 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 276.19 262.79 125730000 13462000 13830000 15121000 0 0 0 12194000 13298000 9758100 0 0 0 9384200 8170100 6308300 0 0 0 8984800 7368200 7853700 0 0 0 13736 1533 13393 258160;258161;258162;258163;258164;258165;258166;258167;258168;258169;258170;258171 158428;158429;158430;158431 158428 4 LTEAVAVFR Unmodified 1004.5655 0.56548059 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 30.09 28.744 2 4.2936E-05 13287 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.84 99.871 125920000 28995000 23760000 26436000 16979000 15074000 14678000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13737 76 13394 258172;258173;258174;258175;258176;258177 158432;158433;158434;158435;158436 158436 5 LTEAVDVFR Unmodified 1048.5553 0.55530983 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 32.355 30.836 2 7.1648E-06 10589 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 170.66 149.36 39040000 0 0 0 14259000 12035000 12746000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13738 114 13395 258178;258179;258180 158437;158438;158439 158437 3 LTEDNVK Unmodified 817.41815 0.41814765 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.08 11.74 2 0.007515 2974 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 90.986 41.579 387170000 21691000 21426000 25823000 0 0 0 90851000 30907000 26218000 7989300 6343900 5458000 17145000 17665000 16382000 0 0 0 34353000 27934000 34131000 0 0 2850000 13739 1009 13396 258181;258182;258183;258184;258185;258186;258187;258188;258189;258190;258191;258192;258193;258194;258195;258196 158440;158441;158442;158443;158444;158445;158446;158447 158440 8 LTEDNVKDTLR Unmodified 1302.6779 0.67794416 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 16.528 17.01 3 0.00026289 4839 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 87.363 78.963 60883000 0 0 0 4944900 0 5236800 4535600 4981200 4509800 3480800 0 10743000 0 0 0 0 0 0 4767000 0 0 5098700 5475900 7108500 13740 1009 13397 258197;258198;258199;258200;258201;258202;258203;258204;258205;258206;258207 158448 158448 1 LTEDRFVSQGELVR Unmodified 1647.858 0.8580338 737 P0ACN4 allR HTH-type transcriptional repressor AllR yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 24.628 24.629 3 1.4585E-05 7585 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 88.507 77.237 11088000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2627400 3282600 5177900 0 0 0 0 0 0 13741 737 13398 258208;258209;258210 158449;158450 158449 1 LTEELTSR Unmodified 947.49238 0.49237523 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.456 16.031 2 0.00038151 5361 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.36 119.47 427660000 31080000 32458000 26842000 1927700 1792700 0 38675000 38679000 39067000 5835500 3320100 4194300 27122000 21079000 25936000 2278800 1721600 1553800 43625000 40948000 36291000 0 0 3236200 13742 1197 13399 258211;258212;258213;258214;258215;258216;258217;258218;258219;258220;258221;258222;258223;258224;258225;258226;258227;258228;258229;258230;258231 158451;158452;158453;158454;158455;158456;158457;158458;158459 158456 9 LTEFVYK Unmodified 898.48002 0.48001963 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.939 23.851 2 0.020298 10871 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 76.847 46.402 2134700000 336140000 304010000 270230000 738010 1008200 984920 155340000 154110000 155170000 1146700 0 1089800 92871000 93145000 75610000 0 0 0 157240000 175430000 157950000 826720 848200 823280 13743 1872 13400 258232;258233;258234;258235;258236;258237;258238;258239;258240;258241;258242;258243;258244;258245;258246;258247;258248;258249;258250;258251 158460;158461;158462;158463;158464;158465;158466;158467;158468;158469 158460 10 LTEGIATLGAAFYPK Unmodified 1550.8344 0.83444481 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 1 2 1 2 2 2 2 2 2 2 47.677 46.189 2;3 1.9581E-08 22264 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 165.11 161.22 1278700000 147670000 133670000 111280000 10659000 12211000 9895700 87419000 91516000 80948000 17257000 17840000 14377000 79133000 63106000 70999000 0 0 0 104350000 108430000 103350000 14606000 0 0 13744 1210 13401 258252;258253;258254;258255;258256;258257;258258;258259;258260;258261;258262;258263;258264;258265;258266;258267;258268;258269;258270;258271;258272;258273;258274;258275;258276;258277;258278;258279;258280;258281;258282;258283;258284;258285 158470;158471;158472;158473;158474;158475;158476;158477;158478;158479;158480;158481;158482;158483;158484;158485;158486;158487;158488;158489;158490;158491;158492 158478 22 LTEINVTSPTCIR Unmodified 1502.7763 0.776278 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 31.576 30.209 2 1.2047E-31 14029 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 265.01 219.64 1816600000 194660000 155680000 143000000 0 0 710700 147340000 160480000 156810000 0 0 0 132760000 128570000 130130000 0 0 0 157860000 160380000 148220000 0 0 0 13745 90 13402 258286;258287;258288;258289;258290;258291;258292;258293;258294;258295;258296;258297;258298 158493;158494;158495;158496;158497;158498;158499;158500;158501;158502;158503;158504 158501 12 LTEMGFPCIGLPGTIDNDIK Unmodified 2190.0701 0.07007676 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 3 2 3 2 1 54.067 52.62 2;3 5.1481E-18 25726 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 209.21 191.62 2274500000 205290000 181830000 190690000 0 0 0 226260000 283950000 279290000 0 0 0 174140000 182210000 158300000 0 0 0 146410000 138790000 107410000 0 0 0 13746 320 13403 258299;258300;258301;258302;258303;258304;258305;258306;258307;258308;258309;258310;258311;258312;258313;258314;258315;258316;258317;258318;258319;258320;258321;258322;258323;258324 158505;158506;158507;158508;158509;158510;158511;158512;158513;158514;158515;158516;158517;158518;158519;158520;158521;158522;158523;158524;158525 158518 21 LTENSFR Unmodified 865.42938 0.42938104 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.464 15.156 2 0.00097355 4663 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.92 59.539 234310000 6108600 8229400 7471000 236410 0 362690 19160000 16582000 18878000 0 0 0 20646000 18035000 16343000 0 0 0 33157000 30028000 34407000 1477100 1622300 1561600 13747 1307 13404 258325;258326;258327;258328;258329;258330;258331;258332;258333;258334;258335;258336;258337;258338;258339;258340;258341 158526 158526 1 LTENVSMTVAGLQVPGPLMGGPAR Unmodified 2394.2399 0.23993606 1286 P26648 ftsP Cell division protein FtsP yes yes 0 0 0 By MS/MS 1 50.241 48.883 3 0.16886 23880 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 10.543 2.6459 6611200000 0 0 6611200000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13748 1286 13405 258342 158527 158527 1 LTERPAAK Unmodified 884.50797 0.50796571 1938 P77754 spy Spheroplast protein Y yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1 1 7.9718 8.8014 2 0.00093451 2087 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 133.6 93.497 42862000 0 0 0 0 0 0 0 0 0 0 0 0 6377000 3815300 5324800 0 0 0 6080100 5841100 5935200 9488400 0 0 13749 1938 13406 258343;258344;258345;258346;258347;258348;258349;258350 158528;158529;158530;158531;158532;158533 158530 6 LTESFAMWPGASVSGWYFSHPDSK Unmodified 2686.2162 0.21622373 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.622 51.354 3 0.00038004 20628 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 65.901 63.139 115830000 12700000 13796000 7462100 0 3128400 3171800 4451300 7303700 6173000 0 3807100 4398000 6618700 5389100 7928800 0 0 0 8674500 11111000 9718100 0 0 0 13750 1083 13407 258351;258352;258353;258354;258355;258356;258357;258358;258359;258360;258361;258362;258363;258364;258365;258366 158534;158535 158534 1 LTETDQR Unmodified 861.41921 0.41921028 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 8.6792 9.5882 2 0.00037797 2461 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.73 112.96 3834100000 1359100000 1297500000 1102700000 3718900 7000900 4176900 0 0 0 0 0 0 29830000 18016000 12077000 0 0 0 0 0 0 0 0 0 13751 339 13408 258367;258368;258369;258370;258371;258372;258373;258374;258375 158536;158537;158538;158539;158540;158541 158541 6 LTFDGDHLATIVNMENNR Unmodified 2058.9793 0.97928792 70 P02919 mrcB Penicillin-binding protein 1B;Penicillin-insensitive transglycosylase;Penicillin-sensitive transpeptidase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 42.478 40.109 3 0.14066 16084 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 30.945 26.419 9856900 0 0 0 0 0 0 0 0 0 2549800 3046700 2025300 0 0 0 0 0 0 0 0 0 0 1164300 1070800 13752 70 13409 258376;258377;258378;258379;258380 158542 158542 0 LTFSEALAK Unmodified 978.5386 0.53859714 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.172 28.742 2 0.0032424 13472 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 82.279 59.787 440850000 33678000 33874000 26521000 0 0 0 35711000 32955000 0 8619300 8702900 7134200 28613000 27859000 27006000 1760400 0 2130400 53746000 48118000 45003000 7847600 6074700 5498400 13753 1197 13410 258381;258382;258383;258384;258385;258386;258387;258388;258389;258390;258391;258392;258393;258394;258395;258396;258397;258398;258399 158543;158544;158545;158546;158547;158548 158544 5 LTGAGIAEER Unmodified 1015.5298 0.52982336 1126 P16686 phnH Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 15.373 16.207 2 4.8742E-05 5473 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.57 119.79 206040000 0 0 1030700 0 0 0 9310600 12644000 11168000 0 0 0 17280000 15700000 13614000 0 0 0 43602000 39231000 42463000 0 0 0 13754 1126 13411 258400;258401;258402;258403;258404;258405;258406;258407;258408;258409 158549;158550;158551;158552;158553;158554 158552 5 LTGALEEAANEFR Unmodified 1419.6994 0.69940789 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 38.426 36.798 2 7.392E-07 17902 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.08 133.44 97611000 23015000 19625000 15005000 0 0 0 0 0 0 0 6161200 0 6783700 4935200 8663900 0 0 0 13421000 0 0 0 0 0 13755 1459 13412 258410;258411;258412;258413;258414;258415;258416;258417 158555;158556;158557;158558 158556 4 LTGALEEAANEFRR Unmodified 1575.8005 0.80051892 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 33.276 31.307 3 3.9722E-06 12441 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 86.944 82.884 12224000 0 0 0 1377700 1096900 1248100 0 0 0 2792700 3516900 2191800 0 0 0 0 0 0 0 0 0 0 0 0 13756 1459 13413 258418;258419;258420;258421;258422;258423 158559;158560;158561 158559 3 LTGDQTAALR Unmodified 1044.5564 0.55637247 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.046 15.772 2 3.4384E-07 5396 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.75 120.2 4343500000 0 0 0 818740 822280 936080 421090000 461940000 404030000 0 0 0 468890000 458280000 476000000 0 0 1172500 583200000 537830000 523770000 0 2525900 2211200 13757 38 13414 258424;258425;258426;258427;258428;258429;258430;258431;258432;258433;258434;258435;258436;258437;258438 158562;158563;158564;158565;158566;158567;158568;158569;158570;158571 158563 9 LTGEPYASK Unmodified 964.48656 0.48656157 1430 P33644 yfiH Laccase domain protein YfiH yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.987 13.659 2 0.059108 4127 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 51.415 45.935 129990000 20174000 15865000 14385000 0 0 0 0 0 13149000 0 0 0 0 0 13293000 0 0 0 15513000 16852000 13761000 2091000 2419700 2484800 13758 1430 13415 258439;258440;258441;258442;258443;258444;258445;258446;258447;258448;258449 158572;158573;158574 158572 3 LTGFEVEFAQQLAK Unmodified 1579.8246 0.8246084 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 2 2 2 2 48.262 46.936 2;3 5.6126E-11 21866 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 208.6 202.43 1703000000 145800000 146580000 130770000 0 0 0 213580000 208040000 176140000 0 0 0 114130000 87374000 77730000 0 0 0 141340000 130360000 131190000 0 0 0 13759 874 13416 258450;258451;258452;258453;258454;258455;258456;258457;258458;258459;258460;258461;258462;258463;258464;258465;258466;258467;258468;258469;258470;258471;258472;258473;258474 158575;158576;158577;158578;158579;158580;158581;158582;158583;158584;158585;158586;158587;158588;158589;158590;158591;158592;158593;158594;158595;158596;158597 158595 23 LTGGLQLPNDETGDCQLFTQNLAR Unmodified 2660.2864 0.28642856 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 1 1 1 2 2 2 2 2 48.674 47.382 2;3 8.685E-50 23085 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 233.62 222.99 590870000 36656000 35440000 28246000 13231000 16501000 22398000 42802000 12592000 11375000 13647000 30346000 30736000 23282000 21105000 23906000 9246700 7631500 7222400 14776000 64082000 58341000 23892000 22107000 21305000 13760 252 13417 258475;258476;258477;258478;258479;258480;258481;258482;258483;258484;258485;258486;258487;258488;258489;258490;258491;258492;258493;258494;258495;258496;258497;258498;258499;258500;258501;258502;258503;258504;258505;258506;258507;258508;258509;258510;258511;258512;258513;258514;258515 158598;158599;158600;158601;158602;158603;158604;158605;158606;158607;158608;158609;158610;158611;158612;158613;158614;158615;158616;158617;158618;158619;158620;158621;158622;158623;158624;158625;158626;158627;158628;158629;158630 158627 33 LTGLEGEQLGIVSLR Unmodified 1583.8883 0.88827129 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 46.168 44.667 2;3 3.882E-27 21891 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 237.67 223.25 2612600000 431820000 444230000 446150000 8715600 10034000 7250300 128010000 111240000 124430000 29517000 30538000 26948000 141830000 130300000 132380000 13125000 7710600 9307600 117030000 113210000 116860000 10071000 11904000 9974500 13761 298 13418 258516;258517;258518;258519;258520;258521;258522;258523;258524;258525;258526;258527;258528;258529;258530;258531;258532;258533;258534;258535;258536;258537;258538;258539;258540;258541;258542;258543;258544;258545;258546;258547;258548;258549;258550;258551;258552;258553;258554;258555;258556 158631;158632;158633;158634;158635;158636;158637;158638;158639;158640;158641;158642;158643;158644;158645;158646;158647;158648;158649;158650;158651;158652;158653;158654;158655;158656;158657;158658;158659;158660 158649 30 LTGLEHEK Unmodified 925.4869 0.48689592 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.092 12.022 2 0.0015526 3125 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.9 68.232 1117000000 0 0 0 1880200 1557300 2114500 112960000 113030000 105190000 0 0 0 131500000 117270000 127220000 0 0 0 140220000 129570000 134520000 0 0 0 13762 882 13419 258557;258558;258559;258560;258561;258562;258563;258564;258565;258566;258567;258568 158661;158662;158663;158664;158665;158666;158667;158668;158669 158664 9 LTGLEPGELFVHR Unmodified 1466.7882 0.78816332 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 38.292 36.506 2;3 2.8565E-13 17659 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 158.3 155.1 2617700000 357520000 355890000 317960000 2179000 2433000 2651600 162990000 177520000 148580000 1674000 1600600 1609200 152700000 120940000 139490000 0 0 0 249740000 213140000 204860000 1365500 1643800 1225700 13763 1639 13420 258569;258570;258571;258572;258573;258574;258575;258576;258577;258578;258579;258580;258581;258582;258583;258584;258585;258586;258587;258588;258589;258590;258591;258592;258593;258594;258595;258596;258597;258598;258599;258600;258601;258602;258603;258604 158670;158671;158672;158673;158674;158675;158676;158677;158678;158679;158680;158681;158682;158683;158684;158685;158686;158687;158688 158680 19 LTGMAFR Unmodified 794.41089 0.4108942 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 22.387 21.959 2 0.00045564 9559 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.67 146.26 36245000000 2278900000 1697200000 1763100000 9067300 9337100 10035000 3921700000 4129300000 3685500000 11389000 9794900 11546000 3094200000 3309100000 2466500000 8044600 4571200 5254300 3049000000 3467200000 3287800000 5123200 5402200 6233500 13764 504 13421 258605;258606;258607;258608;258609;258610;258611;258612;258613;258614;258615;258616;258617;258618;258619;258620;258621;258622;258623;258624;258625;258626;258627;258628;258629 158689;158690;158691;158692;158693;158694;158695;158696;158697;158698;158699;158700;158701;158702;158703;158704;158705;158706;158707;158708;158709;158710;158711;158712 158694 24 LTGMAFR Oxidation (M) 810.40581 0.40580882 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 3 2 2 3 4 3 3 4 2 18.4 18.641 2 0.005908 5341 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 102.98 102.98 685370000 35972000 9032800 16583000 0 0 0 60159000 55393000 53210000 0 0 0 63440000 82354000 57147000 0 0 0 92740000 89589000 69745000 0 0 0 13765 504 13421 258630;258631;258632;258633;258634;258635;258636;258637;258638;258639;258640;258641;258642;258643;258644;258645;258646;258647;258648;258649;258650;258651;258652;258653;258654;258655;258656;258657;258658;258659;258660;258661;258662 158713;158714;158715;158716;158717;158718;158719;158720;158721;158722;158723;158724;158725;158726;158727;158728;158729;158730 158713 309 14 LTGMVQDAQQNK Unmodified 1331.6503 0.65034921 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.699 15.465 2 6.0516E-12 4832 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 193.82 167.15 1613400000 88437000 105150000 94936000 0 0 0 162300000 193850000 182680000 0 0 0 139430000 129580000 130010000 0 0 0 145100000 112660000 129300000 0 0 0 13766 213 13422 258663;258664;258665;258666;258667;258668;258669;258670;258671;258672;258673;258674 158731;158732;158733;158734;158735;158736;158737;158738;158739;158740;158741;158742 158742 12 LTGNNLLNLGWYQDVQDSLK Unmodified 2290.1594 0.15936077 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 54.517 53.273 2;3 6.684E-18 21193 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 230.5 225.78 945480000 36309000 35070000 27210000 0 0 0 67923000 58268000 63443000 21857000 21812000 28481000 56340000 53653000 58053000 39358000 41464000 49556000 88125000 75498000 77123000 18302000 16544000 11090000 13767 30 13423 258675;258676;258677;258678;258679;258680;258681;258682;258683;258684;258685;258686;258687;258688;258689;258690;258691;258692;258693;258694;258695;258696;258697;258698;258699;258700;258701;258702;258703;258704;258705;258706;258707;258708;258709;258710;258711;258712;258713;258714;258715;258716;258717 158743;158744;158745;158746;158747;158748;158749;158750;158751;158752;158753;158754 158743 12 LTGNTLEVAQLHSTLGR Unmodified 1808.9745 0.97446054 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 3 3 3 2 2 2 1 1 1 2 2 2 2 2 2 30.965 29.396 2;3 8.9871E-136 13731 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 414.01 398.12 3580900000 21510000 18133000 14352000 1836100 1819600 2365400 315480000 285740000 306400000 51268000 74653000 68041000 363230000 280180000 307070000 12399000 13887000 12285000 414190000 443080000 410690000 48081000 50180000 64074000 13768 723 13424 258718;258719;258720;258721;258722;258723;258724;258725;258726;258727;258728;258729;258730;258731;258732;258733;258734;258735;258736;258737;258738;258739;258740;258741;258742;258743;258744;258745;258746;258747;258748;258749;258750;258751;258752;258753;258754;258755;258756;258757;258758;258759 158755;158756;158757;158758;158759;158760;158761;158762;158763;158764;158765;158766;158767;158768;158769;158770;158771;158772;158773;158774;158775;158776;158777;158778;158779;158780;158781;158782;158783;158784;158785;158786;158787;158788;158789 158781 35 LTGPASEQQAMEK Unmodified 1388.6606 0.66057954 1945 P77808 yfaY NMN amidohydrolase-like protein YfaY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.097 15.904 2 2.3086E-17 5101 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 208.6 200.38 317590000 26644000 26059000 23830000 0 0 0 34250000 27934000 23223000 0 0 0 26681000 22401000 24295000 0 0 0 31713000 26671000 23889000 0 0 0 13769 1945 13425 258760;258761;258762;258763;258764;258765;258766;258767;258768;258769;258770;258771 158790;158791;158792;158793;158794;158795 158793 6 LTGRPICVTAAADILR Unmodified 1725.956 0.9559737 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 1 2 1 2 2 2 2 1 1 1 35.604 33.89 2;3 5.5955E-18 16074 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 174.95 152.41 698260000 104330000 78075000 75060000 5316300 5416100 4281200 58317000 65469000 61139000 6125400 7623600 6656800 27299000 24762000 27943000 0 0 0 36891000 42004000 41495000 4864400 8741200 6452500 13770 530 13426 258772;258773;258774;258775;258776;258777;258778;258779;258780;258781;258782;258783;258784;258785;258786;258787;258788;258789;258790;258791;258792;258793;258794;258795;258796;258797;258798;258799;258800;258801;258802;258803;258804 158796;158797;158798;158799;158800;158801;158802;158803;158804;158805;158806;158807;158808;158809;158810;158811;158812;158813 158813 18 LTGVSEELGATR Unmodified 1231.6408 0.64083038 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.395 22.667 2 1.1642E-05 9611 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.81 116 596190000 110510000 120390000 94861000 1466200 2120200 1740200 50766000 40701000 41920000 0 0 0 17622000 16985000 17842000 0 0 0 26805000 27742000 24726000 0 0 0 13771 1934 13427 258805;258806;258807;258808;258809;258810;258811;258812;258813;258814;258815;258816;258817;258818;258819 158814;158815;158816;158817;158818;158819;158820;158821;158822;158823 158820 10 LTGYDAVCMQPNSGAQGEYAGLLAIR Unmodified 2754.3105 0.31053482 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 1 2 2 2 1 1 1 50.666 49.326 2;3 2.606E-84 24012 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 307.32 295.88 997240000 49186000 38876000 45810000 9343500 10338000 8883200 100360000 89813000 86132000 15099000 14190000 7952100 79974000 72948000 58717000 0 2967400 0 103220000 90905000 88125000 6806800 8298800 9285700 13772 1409 13428 258820;258821;258822;258823;258824;258825;258826;258827;258828;258829;258830;258831;258832;258833;258834;258835;258836;258837;258838;258839;258840;258841;258842;258843;258844;258845;258846;258847;258848;258849;258850;258851;258852;258853;258854 158824;158825;158826;158827;158828;158829;158830;158831;158832;158833;158834;158835;158836;158837;158838;158839;158840;158841;158842;158843;158844;158845;158846;158847;158848;158849 158831 26 LTIAPALLK Unmodified 938.61645 0.61645353 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.703 35.879 2 0.00043569 17822 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.31 104.27 15569000000 981620000 993300000 939120000 4961700 5814400 5158300 1695900000 1789100000 1559600000 3761500 0 5242500 1214500000 1142400000 1118900000 0 0 0 1462600000 1430500000 1207800000 2378500 3471400 2535500 13773 402 13429 258855;258856;258857;258858;258859;258860;258861;258862;258863;258864;258865;258866;258867;258868;258869;258870;258871;258872;258873;258874 158850;158851;158852;158853;158854;158855;158856;158857;158858;158859;158860;158861;158862;158863;158864;158865;158866;158867;158868;158869;158870;158871;158872 158851 22 LTIAPNLLK Unmodified 981.62227 0.62226719 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.504 34.742 2 0.00020006 15969 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 126.57 110.9 1994500000 363040000 345670000 269480000 0 0 0 237670000 244140000 249140000 1356200 1108200 1461600 42462000 40732000 40346000 0 0 0 60878000 48918000 48153000 0 0 0 13774 401 13430 258875;258876;258877;258878;258879;258880;258881;258882;258883;258884;258885;258886;258887;258888;258889 158873;158874;158875;158876;158877;158878;158879;158880;158881;158882;158883;158884 158883 12 LTIEPSVK Unmodified 885.51713 0.51713341 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.128 21.225 2 0.0019293 8625 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 104.75 90.971 676830000 35880000 0 29544000 11847000 11350000 12590000 0 54624000 0 13731000 22691000 22702000 60662000 50681000 48719000 5641300 3023800 3833700 82260000 84966000 65638000 20681000 17556000 18211000 13775 1854 13431 258890;258891;258892;258893;258894;258895;258896;258897;258898;258899;258900;258901;258902;258903;258904;258905;258906;258907;258908;258909;258910;258911 158885;158886;158887;158888;158889;158890;158891;158892;158893;158894;158895;158896;158897;158898;158899;158900;158901;158902;158903 158892 18 LTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNK Unmodified 3837.7812 0.78123113 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.525 53.091 4 0.013232 26206 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 41.936 37.404 222910000 20029000 32567000 23294000 0 0 0 0 15627000 12799000 0 0 0 20115000 24949000 21219000 0 0 0 18759000 16690000 16864000 0 0 0 13776 681 13432 258912;258913;258914;258915;258916;258917;258918;258919;258920;258921;258922 158904 158904 1 LTIPEVELPNAELLGK Unmodified 1734.9768 0.97675195 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.798 51.462 2 0.00034255 25375 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.252 62.706 188600000 22154000 20031000 17033000 1936100 1657600 1922100 9576600 6598600 7503400 2818600 0 2522600 12895000 10863000 10426000 0 0 0 19294000 17727000 19582000 2188900 0 1874000 13777 544 13433 258923;258924;258925;258926;258927;258928;258929;258930;258931;258932;258933;258934;258935;258936;258937;258938;258939;258940;258941 158905;158906;158907 158906 1 LTIPVDMATEFMTQVAK Unmodified 1893.958 0.95800712 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 2 1 2 1 54.221 52.79 2;3 7.7101E-19 25560 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 190.46 189.15 1459700000 45144000 41906000 40538000 16927000 15067000 11109000 105420000 118370000 111390000 93143000 100530000 113560000 107990000 94537000 100880000 0 0 0 98809000 98834000 91907000 15535000 17613000 20503000 13778 1944 13434 258942;258943;258944;258945;258946;258947;258948;258949;258950;258951;258952;258953;258954;258955;258956;258957;258958;258959;258960;258961;258962;258963;258964;258965;258966;258967;258968;258969;258970;258971;258972;258973;258974;258975;258976;258977;258978;258979;258980;258981 158908;158909;158910;158911;158912;158913;158914;158915;158916;158917;158918;158919;158920;158921;158922 158920 15 LTIQVRPPMDDLLEADDHTIAR Unmodified 2518.285 0.28497199 1243 P24205 lpxM Lipid A biosynthesis myristoyltransferase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.765 40.857 4 0.14534 14480 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 21.616 14.627 100110000 0 0 0 1677300 0 2464600 0 8916700 5073400 5163200 7037200 8193900 6745600 6098300 7301700 0 0 0 15076000 10094000 12866000 0 0 3399100 13779 1243 13435 258982;258983;258984;258985;258986;258987;258988;258989;258990;258991;258992;258993;258994;258995 158923 158923 1 LTISEGR Unmodified 774.42357 0.42356738 574 P0AA43 rsuA Ribosomal small subunit pseudouridine synthase A yes yes 0 0 0 By MS/MS 1 13.682 14.787 2 0.14307 3477 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 46.021 33.76 5108700 0 0 0 0 0 5108700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13780 574 13436 258996 158924 158924 1 LTITPETINHALQSQDMVATWPADTK Unmodified 2880.4328 0.43275844 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.377 48.932 3 0.0012045 24121 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.877 56.404 260350000 17898000 15695000 13706000 0 0 0 19729000 19859000 22543000 3220000 14500000 0 19808000 20326000 23120000 0 0 0 24293000 25828000 19827000 0 0 0 13781 1482 13437 258997;258998;258999;259000;259001;259002;259003;259004;259005;259006;259007;259008;259009;259010 158925 158925 1 LTIVESTR Unmodified 917.5182 0.51819605 810 P0ADU7 yqiB Uncharacterized protein YqiB yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 18.512 18.745 2 1.5426E-06 5254 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 192.11 122.72 81143000 3174900 0 3368300 0 0 0 0 0 0 0 0 0 0 0 0 29215000 20520000 24865000 0 0 0 0 0 0 13782 810 13438 259011;259012;259013;259014;259015 158926;158927;158928;158929 158927 3 LTIVPAQTSAEDVLK Unmodified 1583.877 0.8770379 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 38.952 37.419 2 3.1014E-09 18030 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.66 138.77 2395000000 609240000 550140000 537680000 0 0 2481600 0 0 0 0 0 0 43742000 40780000 40146000 0 0 0 182930000 187790000 200040000 0 0 0 13783 238 13439 259016;259017;259018;259019;259020;259021;259022;259023;259024;259025 158930;158931;158932;158933;158934;158935;158936;158937;158938;158939 158932 8 LTIYALLDSPR Unmodified 1260.7078 0.70778773 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.139 47.891 2 2.9388E-10 23624 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.59 139.68 384140000 41181000 40189000 0 3898000 2901200 2846500 29631000 34771000 0 20144000 21113000 22532000 22944000 0 22884000 0 4435800 6180200 28504000 0 33252000 14428000 16732000 15574000 13784 1408 13440 259026;259027;259028;259029;259030;259031;259032;259033;259034;259035;259036;259037;259038;259039;259040;259041;259042;259043;259044;259045;259046;259047 158940;158941;158942;158943;158944;158945;158946;158947;158948;158949;158950;158951;158952;158953;158954;158955;158956;158957 158944 11 LTKPATTLEFTPAEVAAQR Unmodified 2043.1001 0.10005498 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.755 31.352 3 2.2748E-10 15298 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.42 128.27 472800000 14581000 10286000 9276300 0 0 0 45854000 40517000 39776000 0 0 0 45539000 36506000 35623000 0 0 0 63106000 66415000 65325000 0 0 0 13785 1371 13441 259048;259049;259050;259051;259052;259053;259054;259055;259056;259057;259058;259059 158958;158959;158960;158961;158962;158963;158964;158965;158966;158967 158958 10 LTKPVELIATLDDSAK Unmodified 1712.956 0.95601651 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 38.812 37.033 2;3 8.0879E-12 18263 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 198.48 180.21 4140600000 245100000 167310000 172870000 2850700 0 0 519700000 440960000 401660000 7858500 9057800 7180900 324800000 299940000 341680000 0 0 0 436080000 383600000 376800000 0 3124400 0 13786 1437 13442 259060;259061;259062;259063;259064;259065;259066;259067;259068;259069;259070;259071;259072;259073;259074;259075;259076;259077;259078;259079;259080;259081;259082;259083;259084;259085;259086;259087;259088 158968;158969;158970;158971;158972;158973;158974;158975;158976;158977;158978;158979;158980;158981;158982;158983;158984;158985;158986;158987;158988;158989;158990;158991 158973 24 LTLCDVSAPAVEASR Unmodified 1587.7927 0.79265635 1537 P39406 rsmC Ribosomal RNA small subunit methyltransferase C yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 35.659 34.225 2 0.00016906 16507 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.617 67.085 45884000 13799000 14025000 11440000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3826200 2795000 0 0 0 0 13787 1537 13443 259089;259090;259091;259092;259093 158992 158992 0 LTLDITNLTDKPQK Unmodified 1598.8879 0.88793694 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 35.009 32.936 3 6.4841E-06 12875 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 103.85 102.6 46488000 0 0 0 2075800 0 1309900 0 0 0 11312000 12810000 11302000 0 0 0 0 0 0 0 0 0 4535500 0 3144100 13788 1877 13444 259094;259095;259096;259097;259098;259099;259100 158993;158994;158995 158994 3 LTLDLGGEK Unmodified 944.51786 0.51786169 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 29.318 27.99 2 8.9731E-05 12386 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 138.78 59.478 1019600000 0 0 0 0 0 0 120110000 102090000 107350000 0 0 0 96674000 104610000 95362000 0 0 0 131940000 136360000 125130000 0 0 0 13789 60 13445 259101;259102;259103;259104;259105;259106;259107;259108;259109 158996;158997;158998;158999;159000;159001;159002 159001 6 LTLDLGGEKR Unmodified 1100.619 0.61897272 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 1 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 1 1 2 21.782 21.666 2;3 2.3257E-05 9029 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.7 70.511 566750000 38094000 45597000 26981000 867750 1336000 930270 52804000 54380000 44896000 4638500 2737700 4233500 36123000 36677000 35949000 2189300 1189900 1297100 59911000 56862000 49800000 2805900 3181000 3269200 13790 60 13446 259110;259111;259112;259113;259114;259115;259116;259117;259118;259119;259120;259121;259122;259123;259124;259125;259126;259127;259128;259129;259130;259131;259132;259133;259134;259135;259136;259137;259138;259139;259140;259141;259142;259143;259144;259145;259146;259147;259148;259149 159003;159004;159005;159006;159007;159008;159009;159010;159011;159012;159013;159014;159015;159016;159017;159018;159019;159020 159007 18 LTLDQINTLVTLPGVGALK Unmodified 1965.151 0.15102792 259 P0A6L4 nanA N-acetylneuraminate lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.959 53.485 2 0.00043473 25520 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 99.669 99.253 272310000 33195000 35615000 30730000 0 0 0 12926000 10471000 11884000 0 0 0 28812000 21133000 23083000 0 0 0 22238000 21016000 21205000 0 0 0 13791 259 13447 259150;259151;259152;259153;259154;259155;259156;259157;259158;259159;259160;259161 159021 159021 1 LTLGLLR Unmodified 784.51707 0.51707383 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.867 35.251 2 0.00016514 11773 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 168.62 30.233 2867100000 159750000 160870000 131760000 17314000 15280000 19339000 191170000 208240000 208160000 89434000 105980000 91034000 143760000 149770000 153930000 24020000 20415000 19510000 292230000 262630000 258640000 50662000 47605000 45593000 13792 1044 13448 259162;259163;259164;259165;259166;259167;259168;259169;259170;259171;259172;259173;259174;259175;259176;259177;259178;259179;259180;259181;259182;259183;259184;259185 159022;159023;159024;159025;159026;159027;159028;159029;159030;159031;159032;159033;159034;159035;159036;159037;159038;159039;159040;159041;159042;159043;159044;159045 159023 24 LTLLQTWSEDDFRR Unmodified 1778.8951 0.89514758 459 P0A8U0 syd Protein Syd yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.09 41.436 3 4.0881E-15 20582 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 196.57 190.54 166650000 17044000 16366000 0 1143400 834360 923550 18698000 17027000 14222000 0 0 0 13102000 9931000 10810000 0 0 0 12854000 15225000 11602000 2083000 3163900 1620900 13793 459 13449 259186;259187;259188;259189;259190;259191;259192;259193;259194;259195;259196;259197;259198;259199;259200;259201;259202 159046;159047;159048;159049;159050;159051;159052;159053;159054;159055 159047 10 LTLLYNTSENHQK Unmodified 1559.7944 0.79437091 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 2 2 2 1 1 1 3 3 3 3 3 3 20.345 20.679 2;3 2.2982E-19 8530 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 225.66 219 656160000 59037000 56016000 31601000 2031800 761690 0 53295000 52517000 41424000 23503000 21642000 16448000 50721000 50258000 46070000 0 0 0 43561000 52050000 55223000 0 0 0 13794 1900 13450 259203;259204;259205;259206;259207;259208;259209;259210;259211;259212;259213;259214;259215;259216;259217;259218;259219;259220;259221;259222;259223;259224;259225;259226;259227;259228;259229;259230;259231;259232;259233;259234;259235;259236;259237;259238;259239 159056;159057;159058;159059;159060;159061;159062;159063;159064;159065;159066;159067;159068;159069;159070;159071;159072;159073;159074;159075 159068 20 LTLMSDDLTNVTVK Unmodified 1548.8069 0.80690943 1356 P31063 yedD Uncharacterized lipoprotein YedD yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 42.244 40.162 2 0.00066536 16339 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 84.479 56.466 42725000 0 0 0 0 769320 0 4215900 0 3660700 3433000 0 2556200 0 0 0 0 0 0 11332000 0 11210000 1385300 1802500 2360400 13795 1356 13451 259240;259241;259242;259243;259244;259245;259246;259247;259248;259249 159076 159076 1 LTLNAEQSPAQ Unmodified 1170.5881 0.58806652 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.236 24.948 2 0.00053512 8992 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 87.476 79.536 100500000 7054400 5064900 7100400 2923500 2127800 2898900 12081000 10593000 13529000 7200100 0 7352900 0 5778000 6024200 0 0 0 0 0 0 3871200 3911100 2993800 13796 1304 13452 259250;259251;259252;259253;259254;259255;259256;259257;259258;259259;259260;259261;259262;259263;259264;259265 159077;159078;159079;159080 159077 4 LTLNGDTAVELDVLK Unmodified 1599.872 0.87195253 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 47.202 45.584 2 3.4006E-08 22019 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.1 138.52 200170000 45128000 58284000 55056000 0 0 0 16666000 0 0 1695500 2371500 0 0 0 0 0 0 0 20968000 0 0 0 0 0 13797 657 13453 259266;259267;259268;259269;259270;259271;259272;259273;259274 159081;159082;159083;159084;159085;159086;159087;159088;159089;159090;159091 159084 9 LTLQDNPAIAR Unmodified 1210.667 0.66698555 1527 P39337 yjgM Uncharacterized N-acetyltransferase YjgM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 26.547 25.428 2 2.9404E-14 11583 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 211.35 178.51 215230000 32714000 28481000 26217000 0 0 0 17512000 18948000 14851000 0 0 0 9410400 11028000 9172200 0 0 0 16257000 16033000 14605000 0 0 0 13798 1527 13454 259275;259276;259277;259278;259279;259280;259281;259282;259283;259284;259285;259286;259287;259288;259289 159092;159093;159094;159095;159096;159097;159098;159099;159100;159101;159102;159103 159098 12 LTLTMPETMSIER Unmodified 1520.7579 0.75785074 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 43.259 41.601 2;3 1.7622E-12 19338 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 147.24 142.35 11713000000 1237500000 1122800000 1135900000 9108300 9732900 8847100 1008200000 947820000 959980000 9363900 9059400 7483900 711560000 725830000 758290000 0 0 0 1009000000 1003500000 1024200000 5267600 4847900 4863800 13799 666 13455 259290;259291;259292;259293;259294;259295;259296;259297;259298;259299;259300;259301;259302;259303;259304;259305;259306;259307;259308;259309;259310;259311;259312;259313;259314;259315;259316;259317;259318;259319;259320;259321;259322 159104;159105;159106;159107;159108;159109;159110;159111;159112;159113;159114;159115;159116;159117;159118;159119;159120;159121;159122;159123;159124;159125;159126;159127;159128;159129 159129 23 LTLTMPETMSIER Oxidation (M) 1536.7528 0.75276537 666 P0ABK5 cysK Cysteine synthase A yes yes 0 1 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 3 1 2 1 1 1 2 2 3 36.56 34.918 2 0.00048019 16365 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 82.261 80.32 348450000 16684000 20268000 14255000 415090 461230 0 100000000 8089800 83025000 0 0 0 12190000 11310000 10880000 0 0 0 18343000 16406000 36121000 0 0 0 13800 666 13455 259323;259324;259325;259326;259327;259328;259329;259330;259331;259332;259333;259334;259335;259336;259337;259338;259339;259340;259341;259342;259343;259344 159130;159131;159132;159133;159134;159135;159136;159137;159138 159132 365;366 9 LTLTYAETR Unmodified 1066.5659 0.56587452 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.496 23.792 2 1.6488E-05 7317 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 157.86 155.68 123100000 16282000 3603600 8909700 0 0 0 11094000 0 0 0 0 0 8408900 6645900 6304900 9731900 13748000 12951000 13239000 0 12181000 0 0 0 13801 80 13456 259345;259346;259347;259348;259349;259350;259351;259352;259353;259354;259355;259356 159139;159140;159141;159142;159143 159140 4 LTLTYAETRR Unmodified 1222.667 0.66698555 80 P03018 uvrD DNA helicase II yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 2 1 1 1 1 1 2 22.674 22.273 3 0.17174 9567 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 13.091 4.8667 422970000 39762000 35215000 63293000 0 0 0 0 0 0 0 0 0 35857000 35513000 30938000 0 0 0 45915000 41823000 94652000 0 0 0 13802 80 13457 259357;259358;259359;259360;259361;259362;259363;259364;259365;259366;259367 159144;159145 159144 2 LTLVNHLGIDLGETPEQILSK Unmodified 2289.258 0.25801219 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.72 49.33 3 3.8331E-11 20072 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 132.48 128.17 967690000 29279000 24068000 29528000 13505000 12594000 0 100480000 103320000 100470000 80113000 83913000 76588000 43858000 42869000 34978000 0 0 0 63541000 51790000 47879000 15870000 13044000 0 13803 122 13458 259368;259369;259370;259371;259372;259373;259374;259375;259376;259377;259378;259379;259380;259381;259382;259383;259384;259385;259386 159146;159147;159148;159149;159150;159151;159152;159153;159154;159155;159156;159157;159158 159146 13 LTMEKGDSVFSPDDR Unmodified 1695.7774 0.77740021 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 24.799 23.75 3 0.0082297 7710 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 49.595 48.77 18334000 0 0 0 4390800 4752100 4742400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1835300 2612900 13804 235 13459 259387;259388;259389;259390;259391 159159;159160;159161 159159 3 LTMLLLQLPHIGQVQCGVWPAAVR Unmodified 2699.4768 0.4767527 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.518 53.083 3 1.3549E-30 26370 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 191.95 191.91 776380000 101180000 104500000 112010000 2989200 2758500 0 119310000 117090000 104600000 0 0 2099700 20043000 14851000 17182000 0 0 0 21712000 19431000 16603000 0 0 0 13805 64 13460 259392;259393;259394;259395;259396;259397;259398;259399;259400;259401;259402;259403;259404;259405;259406 159162;159163;159164;159165;159166;159167 159162 6 LTMLLTGTDNIR Unmodified 1346.7228 0.72278587 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 38.884 37.21 2;3 3.783E-12 18386 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 231.23 225.45 2343100000 137470000 121260000 115490000 0 0 0 242680000 211650000 218050000 0 0 0 226800000 217900000 222810000 0 0 0 247330000 212310000 169350000 0 0 0 13806 1189 13461 259407;259408;259409;259410;259411;259412;259413;259414;259415;259416;259417;259418;259419;259420;259421;259422;259423;259424;259425;259426;259427;259428;259429;259430 159168;159169;159170;159171;159172;159173;159174;159175;159176;159177;159178;159179;159180;159181;159182 159169 15 LTMLLTGTDNIR Oxidation (M) 1362.7177 0.71770049 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 32.157 30.907 2 0.0074999 14516 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 64.297 56.077 16777000 0 3004800 0 0 0 0 0 3655600 0 0 0 0 3186000 3616300 3314000 0 0 0 0 0 0 0 0 0 13807 1189 13461 259431;259432;259433;259434;259435 159183 159183 502 1 LTNANVVDDVIDFMLGR Unmodified 1890.9509 0.9509479 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.839 54.365 2 0.00035103 26816 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.865 98.668 268430000 21896000 20823000 20675000 0 0 0 16359000 11320000 15294000 0 0 0 27081000 10296000 26534000 0 0 0 32247000 32748000 33159000 0 0 0 13808 62 13462 259436;259437;259438;259439;259440;259441;259442;259443;259444;259445;259446;259447 159184;159185;159186;159187 159187 0 LTNGFEVTSYIGGEGHNLQEHSVILIR Unmodified 2982.5199 0.51993397 367 P0A7S3 rpsL 30S ribosomal protein S12 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.543 41.969 4 3.8908E-11 17158 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 121.72 119.36 365750000 0 37323000 40485000 14092000 13414000 10267000 0 0 25122000 43987000 33794000 24153000 0 12300000 15020000 0 2519800 2209800 34139000 0 0 17745000 18418000 20766000 13809 367 13463 259448;259449;259450;259451;259452;259453;259454;259455;259456;259457;259458;259459;259460;259461;259462;259463;259464 159188;159189;159190;159191;159192;159193;159194;159195;159196;159197;159198;159199 159188 12 LTNHSLYLYGHCAEGDCR Unmodified 2164.9419 0.94185655 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 1 2 2 1 1 1 2 2 2 2 2 2 2 1 18.782 19.224 3;4 2.1299E-17 7248 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 163.56 162.06 611960000 48388000 59187000 51409000 1008600 1127300 0 27313000 43333000 42908000 2651500 2108900 1433000 56105000 45449000 45395000 0 0 0 60703000 55046000 65915000 1775800 0 702110 13810 503 13464 259465;259466;259467;259468;259469;259470;259471;259472;259473;259474;259475;259476;259477;259478;259479;259480;259481;259482;259483;259484;259485;259486;259487;259488;259489;259490;259491;259492;259493;259494;259495 159200;159201;159202;159203;159204;159205;159206;159207;159208;159209 159205 9 LTNHSLYLYGHCAEGDCREDEHAHEGK Unmodified 3197.3679 0.36794313 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 3 3 3 2 2 2 3 3 3 4 3 2 3 3 1 1 4 3 3 4 2 2 13.715 14.356 3;4;5;6 3.1856E-08 4394 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.97 109.97 1214100000 124750000 56554000 59006000 33256000 20696000 32752000 51189000 79595000 38924000 28664000 25096000 21823000 71732000 75702000 69241000 0 10583000 16129000 118630000 110420000 121620000 26578000 10000000 11116000 13811 503 13465 259496;259497;259498;259499;259500;259501;259502;259503;259504;259505;259506;259507;259508;259509;259510;259511;259512;259513;259514;259515;259516;259517;259518;259519;259520;259521;259522;259523;259524;259525;259526;259527;259528;259529;259530;259531;259532;259533;259534;259535;259536;259537;259538;259539;259540;259541;259542;259543;259544;259545;259546;259547;259548;259549;259550;259551;259552;259553;259554;259555;259556;259557;259558 159210;159211;159212;159213;159214;159215;159216;159217;159218;159219;159220;159221;159222;159223;159224;159225;159226;159227;159228;159229;159230;159231;159232;159233;159234;159235;159236;159237;159238;159239;159240;159241;159242 159222 33 LTNIDNTWNQR Unmodified 1373.6688 0.66877646 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.02 23.771 2 1.678E-28 10448 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 224.86 205.55 33723000 0 0 0 1416000 2085800 1791900 0 0 0 6581200 5378400 5821200 0 0 0 0 0 0 0 0 0 4060700 3397000 3190700 13812 807 13466 259559;259560;259561;259562;259563;259564;259565;259566;259567;259568;259569;259570;259571;259572;259573;259574;259575 159243;159244;159245;159246;159247;159248;159249;159250;159251;159252;159253;159254;159255;159256 159252 14 LTPALGQQK Unmodified 954.54983 0.54983053 83 P03841 malM Maltose operon periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.917 15.457 2 0.00026055 4797 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 121.29 108.26 4052500000 214440000 214800000 164850000 9490500 7683300 9211600 350060000 374750000 343830000 21645000 20097000 20357000 267110000 278570000 255590000 11461000 7985800 8065700 512030000 457840000 479970000 7503200 9432600 5772100 13813 83 13467 259576;259577;259578;259579;259580;259581;259582;259583;259584;259585;259586;259587;259588;259589;259590;259591;259592;259593;259594;259595;259596;259597;259598;259599 159257;159258;159259;159260;159261;159262;159263;159264;159265;159266;159267;159268;159269;159270;159271;159272;159273;159274;159275 159273 19 LTPDADDTVLVK Unmodified 1285.6765 0.67654718 789 P0ADI4 entB Enterobactin synthase component B;Isochorismatase;Aryl carrier protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.057 26.803 2 0.00030058 11829 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.898 70.227 655490000 31226000 24386000 28773000 1114500 925730 1125200 39001000 33570000 39981000 0 0 0 45842000 49433000 46649000 0 0 0 111690000 96169000 100150000 1621200 1843200 1990300 13814 789 13468 259600;259601;259602;259603;259604;259605;259606;259607;259608;259609;259610;259611;259612;259613;259614;259615;259616;259617 159276;159277;159278;159279 159279 4 LTPEQAEQIK Unmodified 1155.6136 0.61355299 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.824 18.469 2 3.785E-05 6756 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.48 116.66 995010000 58716000 59738000 53562000 0 0 0 133590000 125210000 117100000 0 0 0 61528000 61970000 64487000 0 0 0 92808000 84373000 81931000 0 0 0 13815 1505 13469 259618;259619;259620;259621;259622;259623;259624;259625;259626;259627;259628;259629 159280;159281;159282;159283;159284;159285;159286;159287;159288;159289 159284 10 LTPLGIGITDYYIR Unmodified 1593.8766 0.87664397 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.921 50.579 2 2.5826E-06 23578 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 123.62 104.84 207810000 14755000 15710000 15239000 1303700 999710 1309300 24202000 21987000 22169000 3041200 3499900 3868800 0 0 17956000 0 0 0 27913000 27346000 0 2224900 2096000 2192000 13816 1617 13470 259630;259631;259632;259633;259634;259635;259636;259637;259638;259639;259640;259641;259642;259643;259644;259645;259646;259647 159290;159291;159292;159293;159294;159295;159296 159296 7 LTPNFSTWRPCDQVEAAVGWK Unmodified 2461.1849 0.18486402 1423 P33570 tktB Transketolase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 46.521 45.053 3 1.9111E-15 21932 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.53 143.28 758080000 151040000 135540000 114990000 1668800 0 0 80718000 85799000 74425000 0 0 0 13565000 15712000 11749000 0 0 0 25542000 26345000 20993000 0 0 0 13817 1423 13471 259648;259649;259650;259651;259652;259653;259654;259655;259656;259657;259658;259659;259660 159297;159298;159299;159300;159301;159302;159303;159304;159305;159306;159307;159308 159304 12 LTPQQGEIHYENR Unmodified 1583.7692 0.76921879 1122 P16678 phnK Putative phosphonates utilization ATP-binding protein PhnK yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 2 2 2 1 1 2 15.063 15.617 2;3 1.1928E-05 5209 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.011 88.352 103190000 0 0 0 0 0 0 4082700 0 3915800 0 0 0 5948800 5485300 3289100 3303700 2672200 2104300 17028000 16316000 18398000 5986700 6951700 7702900 13818 1122 13472 259661;259662;259663;259664;259665;259666;259667;259668;259669;259670;259671;259672;259673;259674;259675;259676;259677;259678 159309;159310;159311;159312;159313;159314;159315 159312 3 LTPSGEAHR Unmodified 966.48829 0.4882929 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.367 11.275 2 0.0010929 2473 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.374 82.948 66513000 18815000 17309000 15621000 1665900 1826400 2211900 0 0 0 0 0 0 8863400 200010 0 0 0 0 0 0 0 0 0 0 13819 1814 13473 259679;259680;259681;259682;259683;259684;259685;259686 159316 159316 1 LTPTYLGESIAVPHGTVEAK Unmodified 2082.0997 0.09972063 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 1 2 1 1 1 35.045 33.468 2;3 5.4013E-07 16445 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.132 90.308 1077700000 59804000 44976000 46710000 975560 0 1154400 112620000 137280000 119200000 43076000 40024000 41612000 73592000 64966000 76963000 7555000 8212900 6013200 49496000 61942000 56528000 11945000 13051000 0 13820 33 13474 259687;259688;259689;259690;259691;259692;259693;259694;259695;259696;259697;259698;259699;259700;259701;259702;259703;259704;259705;259706;259707;259708;259709;259710;259711;259712;259713;259714;259715;259716;259717;259718;259719;259720 159317;159318;159319;159320;159321;159322;159323;159324;159325;159326;159327;159328;159329;159330;159331;159332;159333 159325 17 LTPYYQGIGPAWTK Unmodified 1593.8191 0.81912909 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 40.27 38.648 2;3 7.8971E-11 19243 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.83 149.14 3660200000 8882400 9757300 11876000 4994300 6530700 5060000 359570000 361420000 364200000 381760000 397310000 452760000 152610000 151640000 131760000 45522000 30023000 29348000 169380000 172970000 170170000 79079000 80217000 83299000 13821 1088 13475 259721;259722;259723;259724;259725;259726;259727;259728;259729;259730;259731;259732;259733;259734;259735;259736;259737;259738;259739;259740;259741;259742;259743;259744;259745;259746;259747;259748;259749;259750;259751;259752;259753;259754;259755;259756;259757;259758;259759;259760;259761;259762;259763;259764 159334;159335;159336;159337;159338;159339;159340;159341;159342;159343;159344;159345;159346;159347;159348;159349;159350;159351;159352;159353;159354;159355;159356;159357;159358;159359;159360;159361;159362;159363;159364;159365 159343 32 LTQAQLINGR Unmodified 1112.6302 0.63020611 1594 P51024 yaiL Uncharacterized protein YaiL yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.889 20.379 2 2.8609E-05 8017 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 145.65 127.59 98223000 7661000 6188700 5938500 0 0 0 11554000 9492000 7884500 0 0 0 8762400 8082100 6197700 0 0 0 9952400 7241300 9268500 0 0 0 13822 1594 13476 259765;259766;259767;259768;259769;259770;259771;259772;259773;259774;259775;259776 159366;159367;159368;159369 159367 4 LTQAVGR Unmodified 743.42899 0.42898711 1095 P14176 proW Glycine betaine/L-proline transport system permease protein ProW yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 11.357 11.876 2 0.0061523 2813 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 96.666 47.26 460860000 0 18254000 14571000 0 0 0 37113000 46160000 41659000 8976900 11605000 11446000 31186000 32592000 31139000 13928000 17280000 17243000 48241000 22224000 46759000 3679000 0 6800800 13823 1095 13477 259777;259778;259779;259780;259781;259782;259783;259784;259785;259786;259787;259788;259789;259790;259791;259792;259793;259794;259795;259796;259797;259798;259799;259800;259801;259802;259803;259804;259805;259806;259807;259808;259809;259810 159370;159371;159372;159373;159374;159375;159376;159377;159378 159377 8 LTQAVSAFR Unmodified 991.54508 0.5450795 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 20.663 21.072 2 6.5335E-06 8306 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 171.53 152.8 306900000 58519000 52785000 53970000 47654000 43031000 50943000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13824 151 13478 259811;259812;259813;259814;259815;259816 159379;159380;159381;159382;159383;159384 159382 6 LTQDSSLLHQHVLK Unmodified 1617.8839 0.88385462 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 1 19.405 19.871 3;4 0.00030481 7888 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 66.989 60.691 567980000 66116000 56876000 71320000 0 544310 515790 42184000 47296000 49612000 0 0 0 44207000 32999000 37604000 0 280440 0 32201000 32927000 52795000 0 0 501600 13825 88 13479 259817;259818;259819;259820;259821;259822;259823;259824;259825;259826;259827;259828;259829;259830;259831;259832;259833;259834;259835;259836;259837;259838;259839;259840;259841;259842;259843;259844 159385;159386;159387;159388;159389;159390;159391;159392;159393;159394;159395;159396;159397 159387 13 LTQDVLDIAR Unmodified 1142.6295 0.62953741 693 P0AC19 folX D-erythro-7,8-dihydroneopterin triphosphate epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 34.185 32.736 2 7.7291E-06 14876 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 155.07 138.29 1125700000 115300000 102420000 107540000 0 1060900 0 71351000 73684000 78559000 0 0 0 85271000 77772000 83077000 0 0 0 103390000 110770000 115470000 0 0 0 13826 693 13480 259845;259846;259847;259848;259849;259850;259851;259852;259853;259854;259855;259856;259857;259858 159398;159399;159400;159401;159402;159403;159404;159405;159406;159407;159408;159409 159409 11 LTQEQLDNFR Unmodified 1262.6255 0.62551466 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 4 5 4 4 4 3 4 2 2 3 2 2 1 1 1 5 3 4 3 3 4 25.067 24.082 2;3 2.9591E-25 8496 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 271.19 252.09 29240000000 1330000000 1262500000 1218700000 1794100000 1640400000 1722200000 1798300000 1824400000 1821500000 211930000 194090000 193500000 948110000 948150000 876820000 46976000 32827000 34212000 1596200000 1675400000 1632600000 2233500000 2007800000 2195800000 13827 939 13481 259859;259860;259861;259862;259863;259864;259865;259866;259867;259868;259869;259870;259871;259872;259873;259874;259875;259876;259877;259878;259879;259880;259881;259882;259883;259884;259885;259886;259887;259888;259889;259890;259891;259892;259893;259894;259895;259896;259897;259898;259899;259900;259901;259902;259903;259904;259905;259906;259907;259908;259909;259910;259911;259912;259913;259914;259915;259916;259917;259918;259919;259920;259921;259922;259923;259924;259925;259926;259927;259928;259929;259930;259931;259932;259933 159410;159411;159412;159413;159414;159415;159416;159417;159418;159419;159420;159421;159422;159423;159424;159425;159426;159427;159428;159429;159430;159431;159432;159433;159434;159435;159436;159437;159438;159439;159440;159441;159442;159443;159444;159445;159446;159447;159448;159449;159450;159451;159452;159453;159454;159455;159456;159457;159458;159459;159460;159461;159462;159463;159464;159465;159466;159467;159468;159469;159470;159471 159433 59 LTQEQLDNFRQEVHGNGLSSYPHPK Unmodified 2893.4107 0.41071787 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 6 6 6 1 1 4 3 4 3 2 2 1 1 1 6 7 7 28.233 26.822 2;3;4;5;6 1.523E-40 9910 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 203.82 201.71 24082000000 8007100 0 0 3929400000 3567300000 3981900000 0 5863000 6055200 473590000 336740000 351810000 0 0 0 107440000 129800000 124930000 12125000 11132000 7902200 3946500000 3809200000 3272000000 13828 939 13482 259934;259935;259936;259937;259938;259939;259940;259941;259942;259943;259944;259945;259946;259947;259948;259949;259950;259951;259952;259953;259954;259955;259956;259957;259958;259959;259960;259961;259962;259963;259964;259965;259966;259967;259968;259969;259970;259971;259972;259973;259974;259975;259976;259977;259978;259979;259980;259981;259982;259983;259984;259985;259986;259987;259988;259989;259990;259991;259992;259993;259994;259995 159472;159473;159474;159475;159476;159477;159478;159479;159480;159481;159482;159483;159484;159485;159486;159487;159488;159489;159490;159491;159492;159493;159494;159495;159496;159497;159498;159499;159500;159501;159502;159503;159504;159505;159506;159507;159508;159509;159510;159511;159512;159513;159514;159515;159516;159517;159518;159519;159520;159521;159522;159523;159524;159525 159491 54 LTQIAIADSDK Unmodified 1173.6241 0.62411768 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 22.673 22.155 2 2.2916E-05 9743 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.57 91.967 503310000 48210000 49715000 38480000 0 0 0 69422000 62562000 61574000 0 0 0 32018000 31692000 31576000 0 0 0 0 41246000 36816000 0 0 0 13829 1507 13483 259996;259997;259998;259999;260000;260001;260002;260003;260004;260005;260006 159526 159526 1 LTQIAIADSDKLR Unmodified 1442.8093 0.80929269 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.402 24.189 3 0.00015363 8727 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 83.53 80.664 98016000 0 0 0 4579600 2242900 5215300 13302000 15106000 12761000 8590700 10398000 10361000 0 0 0 0 2635900 0 0 5746300 7077600 0 0 0 13830 1507 13484 260007;260008;260009;260010;260011;260012;260013;260014;260015;260016;260017;260018 159527;159528;159529;159530;159531 159528 4 LTQLISAAQK Unmodified 1071.6288 0.62880913 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.114 21.32 2 1.0855E-06 8677 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 189.13 171.75 1599800000 132480000 113050000 109040000 1060100 957120 1060000 202320000 220610000 221900000 0 1792300 1848600 100000000 91972000 91315000 0 0 0 107200000 104310000 98919000 0 0 0 13831 145 13485 260019;260020;260021;260022;260023;260024;260025;260026;260027;260028;260029;260030;260031;260032;260033;260034;260035 159532;159533;159534;159535;159536;159537;159538;159539;159540;159541;159542;159543 159534 10 LTQPEWFGWSQEK Unmodified 1634.7729 0.77290718 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 44.516 42.97 2;3 2.3053E-17 20957 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 208.63 196.57 19101000000 5138400000 5097000000 4763000000 9226200 6929000 9581400 563790000 548670000 491330000 0 0 0 363470000 334260000 321930000 0 0 0 498440000 481480000 470510000 2630200 0 0 13832 1217 13486 260036;260037;260038;260039;260040;260041;260042;260043;260044;260045;260046;260047;260048;260049;260050;260051;260052;260053;260054;260055;260056;260057;260058;260059;260060;260061;260062;260063;260064;260065 159544;159545;159546;159547;159548;159549;159550;159551;159552;159553;159554;159555;159556;159557;159558;159559;159560;159561;159562;159563;159564;159565;159566;159567;159568;159569;159570 159556 27 LTQSDIR Unmodified 831.44503 0.4450311 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.298 12.834 2 0.0017267 3007 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 124.89 45.434 495740000 12254000 62900000 0 3883300 2673200 3437300 92559000 97751000 22933000 41656000 34100000 37702000 16937000 0 0 4440700 3804800 3703600 28517000 0 0 9213200 9479600 7796600 13833 1747 13487 260066;260067;260068;260069;260070;260071;260072;260073;260074;260075;260076;260077;260078;260079;260080;260081;260082;260083;260084 159571;159572;159573;159574;159575 159573 5 LTQSELR Unmodified 845.46068 0.46068117 1983 yes no 0 0 0 By MS/MS By matching By matching 2 1 1 16.249 16.191 2 0.11154 4724 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 51.787 21.98 6331000 0 0 0 0 0 0 0 0 0 3645900 1448000 1237100 0 0 0 0 0 0 0 0 0 0 0 0 + + 13834 1983 13488 260085;260086;260087;260088 159576 159576 1 LTQYSHGAGCGCK Unmodified 1437.6129 0.61291784 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 10.649 11.343 2;3 8.9055E-09 2642 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.68 147.99 915760000 55412000 57611000 50781000 0 0 0 112830000 98565000 112290000 7016000 0 0 77273000 56982000 57289000 2590600 4060900 4207000 84939000 69493000 64419000 0 0 0 13835 1119 13489 260089;260090;260091;260092;260093;260094;260095;260096;260097;260098;260099;260100;260101;260102;260103;260104;260105;260106;260107;260108;260109;260110;260111;260112;260113;260114;260115;260116;260117 159577;159578;159579;159580;159581;159582;159583;159584;159585;159586;159587;159588;159589;159590;159591;159592;159593;159594;159595;159596;159597;159598;159599 159582 22 LTRPWGETTAR Unmodified 1286.6731 0.67313356 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 14.902 15.714 2;3 4.5343E-06 5262 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.56 94.33 656270000 126020000 158320000 118450000 1019300 1093500 882600 46953000 46221000 43002000 0 0 0 16472000 13686000 18713000 0 0 0 19444000 23658000 22343000 0 0 0 13836 1934 13490 260118;260119;260120;260121;260122;260123;260124;260125;260126;260127;260128;260129;260130;260131;260132;260133;260134;260135;260136;260137;260138;260139;260140;260141;260142;260143;260144 159600;159601;159602;159603;159604;159605;159606;159607;159608;159609 159602 9 LTSENPIDLVR Unmodified 1255.6772 0.67721588 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 35.797 34.174 2 4.3402E-05 16703 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 130.66 107.23 359510000 46605000 38801000 36189000 1865800 1757500 1847700 95183000 50298000 49517000 0 0 0 5386700 4330900 6595700 0 0 0 4682300 9856600 6591000 0 0 0 13837 498 13491 260145;260146;260147;260148;260149;260150;260151;260152;260153;260154;260155;260156;260157;260158;260159;260160;260161 159610;159611;159612;159613;159614 159611 4 LTSGPALPGK Unmodified 939.53893 0.53893149 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.481 17.938 2 0.011934 6469 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 64.42 53.953 106090000 9167500 8949600 11716000 0 0 0 9287700 11642000 9581500 1476700 958490 1045900 6803700 6415600 7228000 500960 0 482820 7009600 7231600 6592900 0 0 0 13838 1164 13492 260162;260163;260164;260165;260166;260167;260168;260169;260170;260171;260172;260173;260174;260175;260176;260177;260178 159615;159616 159616 0 LTSLADLSR Unmodified 974.53966 0.53965977 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.268 27.02 2 0.00083512 12627 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 100.02 76.494 695450000 110990000 100350000 99558000 0 0 0 61706000 61992000 52644000 0 0 0 27841000 27982000 33644000 0 0 0 43755000 40681000 34306000 0 0 0 13839 1420 13493 260179;260180;260181;260182;260183;260184;260185;260186;260187;260188;260189;260190 159617;159618;159619;159620;159621;159622;159623;159624;159625;159626;159627;159628 159619 11 LTSLLSEQGIMVAR Unmodified 1516.8283 0.82831357 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 40.549 40.672 2 2.4787E-45 14305 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 287.65 257.87 252480000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94558000 83999000 73921000 0 0 0 0 0 0 13840 1249 13494 260191;260192;260193 159629;159630;159631 159631 3 LTSNFWLPEK Unmodified 1233.6394 0.63937381 1458 P37146 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.963 38.289 2 0.013684 18699 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.283 40.543 78780000 9006000 8073800 4439600 0 0 0 3468200 3889600 3134800 0 0 0 5154600 7336200 5146200 0 0 0 9380900 9969900 9779900 0 0 0 13841 1458 13495 260194;260195;260196;260197;260198;260199;260200;260201;260202;260203;260204;260205 159632;159633;159634 159634 3 LTSQGLFDGEK Unmodified 1193.5928 0.59281755 1367 P31441 ade Adenine deaminase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.822 24.583 2 0.0022395 11201 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.652 57.111 111410000 0 6780500 5589400 0 0 0 9085700 11780000 10513000 2233400 1499400 1187200 9007800 9127100 9432100 0 0 0 10579000 11936000 11610000 0 0 1047400 13842 1367 13496 260206;260207;260208;260209;260210;260211;260212;260213;260214;260215;260216;260217;260218;260219;260220 159635 159635 1 LTSSDTR Unmodified 778.3821 0.38209649 893 P0AEX3 kgtP Alpha-ketoglutarate permease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5.7221 6.5698 2 0.00085673 1195 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143.02 125.46 173750000 38521000 41632000 25197000 4686600 0 0 974100 0 0 0 0 0 4866900 0 2753800 0 0 0 0 27786000 27337000 0 0 0 13843 893 13497 260221;260222;260223;260224;260225;260226;260227;260228;260229 159636;159637;159638;159639;159640 159636 5 LTSTEEFGK Unmodified 1010.492 0.49204087 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.524 16.082 2 0.0011292 4475 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 92.439 84.749 183740000 10808000 12143000 9809700 4177900 4226900 4216200 22992000 24912000 26848000 13173000 10845000 12569000 16743000 0 0 0 0 2314700 0 0 0 0 7963800 0 13844 1365 13498 260230;260231;260232;260233;260234;260235;260236;260237;260238;260239;260240;260241;260242;260243;260244 159641;159642;159643;159644;159645 159641 5 LTTAELPVIASLGIAEVPVIR Unmodified 2161.2722 0.27220569 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.442 53.969 2 4.1167E-43 25802 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 239.75 239.75 519780000 64354000 64975000 58612000 0 0 0 37958000 38390000 36457000 0 0 0 33754000 40145000 31080000 0 0 0 35730000 34334000 43989000 0 0 0 13845 1076 13499 260245;260246;260247;260248;260249;260250;260251;260252;260253;260254;260255;260256 159646;159647;159648;159649;159650;159651;159652;159653 159651 8 LTTAESCTGGK Unmodified 1123.5179 0.51793805 1362 P31131 ydeJ Protein YdeJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 10.911 11.611 2 0.00030292 2883 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.8 103.94 44890000 16712000 14725000 13454000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13846 1362 13500 260257;260258;260259 159654;159655;159656 159654 3 LTTCVHSNWQLK Unmodified 1485.7398 0.73983291 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 21.4 21.7 2 0.0018672 8808 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 64.064 59.726 27874000 7495000 5762500 5852100 0 0 0 0 0 0 0 0 0 0 1544200 834060 0 0 0 2819800 0 3566700 0 0 0 13847 1326 13501 260260;260261;260262;260263;260264;260265;260266 159657 159657 0 LTTDASEWEVLLDGEK Unmodified 1804.8731 0.87307474 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.937 50.69 2 6.8884E-19 25006 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 198.55 183.73 234410000 12544000 19254000 13095000 0 0 0 21778000 20201000 17160000 0 0 0 19551000 21865000 16601000 0 0 0 24048000 24279000 24036000 0 0 0 13848 1500 13502 260267;260268;260269;260270;260271;260272;260273;260274;260275;260276;260277;260278 159658;159659;159660;159661;159662 159658 5 LTTDIGPVIDSEAK Unmodified 1457.7613 0.76133944 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.348 31.939 2 1.1073E-08 12256 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 154.66 150.36 1036200000 43407000 49322000 45339000 21370000 20308000 20396000 35414000 39828000 37446000 0 34588000 34263000 34872000 0 34453000 13182000 6409500 8886500 114280000 131860000 124990000 62018000 57137000 66473000 13849 215 13503 260279;260280;260281;260282;260283;260284;260285;260286;260287;260288;260289;260290;260291;260292;260293;260294;260295;260296;260297;260298;260299;260300;260301 159663;159664;159665;159666;159667;159668;159669;159670;159671;159672;159673;159674;159675;159676;159677 159667 15 LTTDKGEWLLYR Unmodified 1493.7878 0.78782897 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 3 2 2 2 2 1 1 1 1 2 2 2 2 2 2 33.173 31.581 2;3 8.2591E-12 15417 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 231.42 221.99 1303500000 95036000 85456000 85177000 7396500 7527600 8258600 138380000 135630000 124440000 18307000 14593000 15961000 65848000 69882000 47930000 7966200 5177700 6414600 118840000 110380000 102050000 10749000 10902000 11209000 13850 62 13504 260302;260303;260304;260305;260306;260307;260308;260309;260310;260311;260312;260313;260314;260315;260316;260317;260318;260319;260320;260321;260322;260323;260324;260325;260326;260327;260328;260329;260330;260331;260332;260333;260334;260335;260336;260337;260338;260339;260340;260341;260342;260343 159678;159679;159680;159681;159682;159683;159684;159685;159686;159687;159688;159689;159690;159691;159692;159693;159694;159695;159696;159697;159698;159699;159700;159701;159702;159703;159704;159705;159706 159685 28 LTTGCSVIVTGK Unmodified 1234.6591 0.65912298 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.311 21.522 2 1.251E-05 8624 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.17 90.079 1018700000 105390000 116070000 97791000 1445000 1877000 1588700 75254000 77696000 81124000 0 915780 0 61883000 56597000 63870000 0 0 0 104790000 89491000 81001000 0 947040 1013500 13851 444 13505 260344;260345;260346;260347;260348;260349;260350;260351;260352;260353;260354;260355;260356;260357;260358;260359;260360;260361 159707;159708;159709;159710;159711;159712;159713;159714;159715;159716;159717;159718 159712 12 LTTLGCK Unmodified 791.42112 0.42112454 1288 P27126 rfaS Lipopolysaccharide core biosynthesis protein RfaS yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 12.955 13.608 2 0.062312 3511 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 60.788 46.006 17930000 0 0 0 0 0 0 3834000 0 2455600 2433500 0 0 0 0 0 0 0 0 0 4592800 4613900 0 0 0 13852 1288 13506 260362;260363;260364;260365;260366 159719 159719 1 LTTLQDNTITTSLQYANGQITLNGQK Unmodified 2835.4614 0.46141603 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 48.488 46.505 3 2.0346E-10 18856 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 118.37 115.93 39325000 0 0 0 0 0 0 0 0 0 12610000 10798000 15917000 0 0 0 0 0 0 0 0 0 0 0 0 13853 1944 13507 260367;260368;260369 159720 159720 1 LTTLTPFAPALTDEQAAEQVEIQVK Unmodified 2712.4222 0.42217698 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.115 51.681 3 6.0925E-05 25730 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 80.683 78.339 83521000 6789400 0 7128700 0 0 0 13356000 0 8514100 0 0 0 10482000 0 10643000 0 0 0 13272000 0 13336000 0 0 0 13854 280 13508 260370;260371;260372;260373;260374;260375;260376;260377 159721 159721 1 LTTPNTIVLAVR Unmodified 1296.7765 0.776536 1803 P76008 ldcA Murein tetrapeptide carboxypeptidase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.066 36.393 2 4.4885E-06 17669 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 147.2 140.3 103830000 12577000 10605000 7354600 0 0 0 10136000 9574400 6952700 0 0 0 7556700 6680800 6012300 0 0 0 9705200 9139500 7531400 0 0 0 13855 1803 13509 260378;260379;260380;260381;260382;260383;260384;260385;260386;260387;260388;260389 159722;159723;159724;159725;159726;159727;159728;159729;159730;159731 159726 10 LTVADSAR Unmodified 831.44503 0.4450311 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.843 13.52 2 0.0010424 3939 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 112.37 51.571 553910000 19289000 28596000 21682000 7410900 9533600 7761900 51953000 65365000 50304000 14336000 13747000 15894000 35934000 33653000 31049000 0 4164800 0 42937000 38843000 43644000 10302000 0 7506100 13856 210 13510 260390;260391;260392;260393;260394;260395;260396;260397;260398;260399;260400;260401;260402;260403;260404;260405;260406;260407;260408;260409;260410;260411;260412 159732;159733;159734;159735;159736;159737;159738;159739;159740;159741;159742;159743;159744;159745;159746;159747 159739 14 LTVAGPR Unmodified 712.42317 0.42317345 1963 Q46871 yqjH NADPH-dependent ferric-chelate reductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 14.086 14.515 2 0.11944 4405 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.344 29.9 14783000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 814330 756680 1371500 3785200 4822000 3233000 0 0 0 13857 1963 13511 260413;260414;260415;260416;260417;260418 159748;159749 159748 0 LTVDQHR Unmodified 867.45626 0.45626449 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 2 1 1 2 10.744 11.481 2 0.026174 2692 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 70.912 61.672 332180000 32494000 50793000 51369000 0 0 0 27383000 5854100 31814000 4049100 0 2832600 18855000 14171000 21388000 0 0 0 8039100 20210000 42925000 0 0 0 13858 1609 13512 260419;260420;260421;260422;260423;260424;260425;260426;260427;260428;260429;260430;260431;260432;260433;260434;260435;260436;260437;260438;260439;260440 159750;159751;159752 159752 3 LTVELGR Unmodified 786.45995 0.45995289 1105 P15070 fliN Flagellar motor switch protein FliN yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 22.509 21.982 2 0.005062 6832 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 101.21 56.681 67464000 9546700 9605800 9635000 0 3578700 2471900 0 0 9785800 0 0 0 0 0 0 0 0 0 11012000 11828000 0 0 0 0 13859 1105 13513 260441;260442;260443;260444;260445;260446;260447;260448;260449 159753;159754;159755 159755 3 LTVLDSLSK Unmodified 974.56481 0.56481189 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 3 2 2 2 2 2 2 2 2 33.439 31.993 1;2 0.00020183 14515 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 126.41 53.92 23666000000 2033200000 1716700000 1450500000 0 0 284950 3356600000 3142500000 2765700000 0 0 0 1359800000 1152500000 1317200000 0 0 0 1884600000 1889600000 1596600000 0 0 0 13860 321 13514 260450;260451;260452;260453;260454;260455;260456;260457;260458;260459;260460;260461;260462;260463;260464;260465;260466;260467;260468;260469;260470;260471;260472;260473;260474;260475 159756;159757;159758;159759;159760;159761;159762;159763;159764;159765;159766;159767;159768;159769;159770;159771;159772;159773;159774;159775;159776;159777;159778;159779;159780;159781;159782;159783;159784;159785 159781 23 LTVPHYDMK Unmodified 1102.5481 0.54811597 1279 P26281 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 22.013 22.082 3 0.081418 9041 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 35.541 33.017 81165000 9358500 11102000 10494000 0 0 0 4019200 4728000 0 0 0 0 6412300 4511900 4177100 0 0 0 9340900 10058000 6964600 0 0 0 13861 1279 13515 260476;260477;260478;260479;260480;260481;260482;260483;260484;260485;260486 159786;159787;159788;159789;159790;159791;159792 159787 7 LTVSMLGK Unmodified 847.48372 0.48372479 859 P0AEH1 rseP Regulator of sigma-E protease RseP yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 27.311 25.849 2 0.11011 11949 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 47.082 35.433 31848000 0 0 0 773470 0 0 0 4544300 3010700 1693700 2378500 0 0 3441500 0 0 0 0 4487500 5453000 5060000 0 0 1005200 13862 859 13516 260487;260488;260489;260490;260491;260492;260493;260494;260495;260496 159793 159793 1 LTVTVFK Unmodified 806.49019 0.49019038 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 1 28.775 27.455 1;2 0.010377 12435 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.866 42.255 6549400000 995710000 834730000 801310000 10070000 10025000 8553800 358810000 391130000 342360000 4168600 3224400 3167500 298820000 283810000 274370000 2511600 1861700 2082600 679080000 621570000 604000000 7269200 5712100 5082400 13863 1444 13517 260497;260498;260499;260500;260501;260502;260503;260504;260505;260506;260507;260508;260509;260510;260511;260512;260513;260514;260515;260516;260517;260518;260519;260520;260521;260522;260523;260524;260525;260526;260527;260528;260529;260530;260531;260532;260533;260534;260535;260536;260537 159794;159795;159796;159797;159798;159799;159800;159801;159802;159803;159804;159805;159806;159807;159808;159809;159810;159811;159812 159809 17 LTWLNVNDALSIDGK Unmodified 1657.8675 0.86753585 770 P0AD59 ivy Inhibitor of vertebrate lysozyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.846 50.561 2 2.092E-08 24698 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 137.59 132.69 156860000 26832000 26521000 26017000 0 0 0 14353000 13947000 14165000 7551900 0 0 5148400 5769200 5973300 0 0 0 0 5226900 5357200 0 0 0 13864 770 13518 260538;260539;260540;260541;260542;260543;260544;260545;260546;260547;260548;260549 159813;159814;159815;159816 159815 4 LTWTQLLDEVDEALALGHK Unmodified 2151.1212 0.12118435 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 55.73 54.261 3 2.0145E-29 27064 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 203.89 203.05 1847600000 0 0 0 1206400 0 0 541810000 476900000 490340000 4523000 4561300 4909600 40977000 39989000 34141000 0 0 0 64490000 70137000 73655000 0 0 0 13865 1265 13519 260550;260551;260552;260553;260554;260555;260556;260557;260558;260559;260560;260561;260562 159817;159818;159819;159820;159821;159822;159823;159824;159825 159817 9 LTYAGNR Unmodified 793.40825 0.40825167 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.721 12.57 2 0.0007365 3408 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.21 121.21 1053900000 0 48565000 33845000 0 0 0 86524000 98329000 81752000 0 0 0 102010000 91576000 93221000 0 0 0 147310000 138050000 132750000 0 0 0 13866 1496 13520 260563;260564;260565;260566;260567;260568;260569;260570;260571;260572;260573 159826;159827;159828;159829;159830;159831;159832;159833;159834;159835;159836 159826 11 LVAAIDGIDR Unmodified 1041.5819 0.58185893 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 2 1 2 2 2 2 1 1 1 29.575 28.297 2 7.6498E-06 10361 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 155.1 109.39 1564200000 116310000 102840000 112000000 18141000 15695000 16828000 91885000 104180000 95158000 21107000 15777000 18502000 92224000 98877000 84423000 13707000 9480900 12328000 154330000 152600000 165410000 18063000 17188000 17125000 13867 862 13521 260574;260575;260576;260577;260578;260579;260580;260581;260582;260583;260584;260585;260586;260587;260588;260589;260590;260591;260592;260593;260594;260595;260596;260597;260598;260599;260600;260601;260602;260603;260604;260605;260606;260607;260608;260609;260610;260611;260612 159837;159838;159839;159840;159841;159842;159843;159844;159845;159846;159847;159848;159849;159850;159851;159852;159853;159854;159855 159843 19 LVADGLLAK Unmodified 898.54877 0.54876789 156 P07102 appA Periplasmic AppA protein;Phosphoanhydride phosphohydrolase;4-phytase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 28.838 27.478 2 0.15604 13051 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 37.558 6.269 133860000 11489000 11172000 7046700 864680 690130 858480 24236000 44716000 25094000 0 0 0 0 4029900 3662700 0 0 0 0 0 0 0 0 0 13868 156 13522 260613;260614;260615;260616;260617;260618;260619;260620;260621;260622;260623;260624 159856 159856 1 LVADHLIAANLAGHDSHGIGMIPSYVR Unmodified 2826.4599 0.45991667 1342 P30178 ybiC Uncharacterized oxidoreductase YbiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 2 3 2 3 1 3 3 3 39.975 38.297 3;4;5 5.033E-31 18447 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 189.39 178.08 1564300000 264470000 287540000 260510000 265850 0 683170 111120000 94700000 123160000 0 0 0 50729000 73440000 33542000 0 0 0 83710000 84354000 96075000 0 0 0 13869 1342 13523 260625;260626;260627;260628;260629;260630;260631;260632;260633;260634;260635;260636;260637;260638;260639;260640;260641;260642;260643;260644;260645;260646;260647;260648;260649;260650;260651;260652;260653;260654;260655;260656;260657;260658 159857;159858;159859;159860;159861;159862;159863;159864;159865;159866;159867;159868;159869;159870;159871;159872;159873;159874;159875;159876;159877;159878;159879 159874 23 LVADINAER Unmodified 999.53491 0.53490874 1813 P76076 ydbL Uncharacterized protein YdbL yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 18.796 19.269 2 0.0015495 7259 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 88.294 27.612 43727000 0 0 4292900 0 0 0 5004700 4723300 5359700 0 0 0 0 0 0 0 0 0 7992500 10516000 5838000 0 0 0 13870 1813 13524 260659;260660;260661;260662;260663;260664;260665 159880 159880 1 LVADLIR Unmodified 798.49634 0.49633839 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 2 1 1 1 28.196 26.956 2 0.0007365 12310 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 146.21 76.823 8176000000 898260000 868310000 877290000 40176000 42543000 41077000 390000000 374540000 351880000 83530000 88780000 81803000 479650000 473770000 465350000 83848000 61895000 69038000 691930000 703910000 694850000 106620000 110370000 96585000 13871 1636 13525 260666;260667;260668;260669;260670;260671;260672;260673;260674;260675;260676;260677;260678;260679;260680;260681;260682;260683;260684;260685;260686;260687;260688;260689;260690;260691;260692;260693;260694;260695;260696;260697;260698;260699 159881;159882;159883;159884;159885;159886;159887;159888;159889;159890;159891;159892;159893;159894;159895;159896;159897;159898;159899;159900;159901;159902;159903;159904;159905;159906;159907;159908;159909;159910;159911;159912;159913;159914;159915;159916 159912 36 LVADLPESFYTQAAK Unmodified 1651.8457 0.84573777 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.443 40.744 2 6.8875E-06 19846 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.34 118.37 1388400000 116450000 108300000 101720000 0 0 0 192600000 175120000 170900000 0 0 0 93889000 83785000 77206000 0 0 0 93281000 87315000 87805000 0 0 0 13872 1284 13526 260700;260701;260702;260703;260704;260705;260706;260707;260708;260709;260710;260711 159917;159918;159919;159920;159921;159922;159923;159924;159925;159926;159927;159928 159921 12 LVADPLLFER Unmodified 1171.6601 0.66010926 1676 P64483 yeaK Uncharacterized protein YeaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.831 42.298 2 0.00023357 19901 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 118.18 78.074 617040000 75690000 77182000 72747000 2445900 0 1607600 61064000 63432000 57331000 2317300 0 0 33944000 28919000 22165000 1625800 0 0 37850000 36201000 41558000 0 957350 0 13873 1676 13527 260712;260713;260714;260715;260716;260717;260718;260719;260720;260721;260722;260723;260724;260725;260726;260727;260728 159929;159930;159931;159932;159933;159934;159935;159936;159937;159938;159939 159938 11 LVADSITSQLER Unmodified 1330.7092 0.70924429 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 2 2 2 1 1 2 3 3 2 1 1 1 2 2 2 1 1 2 33.528 32.084 2;3 5.9354E-19 15232 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 192.12 167.34 9861700000 1489600000 1596900000 1330400000 1371600 205340 47385000 493960000 500240000 456670000 91093000 1966600 2281800 652820000 572860000 541720000 74039000 58178000 66679000 8863400 884190000 984210000 1829600 2273800 1966200 13874 374 13528 260729;260730;260731;260732;260733;260734;260735;260736;260737;260738;260739;260740;260741;260742;260743;260744;260745;260746;260747;260748;260749;260750;260751;260752;260753;260754;260755;260756;260757;260758;260759;260760;260761;260762;260763;260764;260765;260766;260767;260768;260769 159940;159941;159942;159943;159944;159945;159946;159947;159948;159949;159950;159951;159952;159953;159954;159955;159956;159957;159958;159959;159960;159961;159962;159963;159964 159950 25 LVAEFHDLIHTFPMLNPK Unmodified 2121.1081 0.10811725 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 2 2 1 2 2 2 2 2 48.855 47.532 3;4 0.00010336 23486 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 67.416 62.207 142800000 16024000 17245000 20049000 0 0 0 6455300 11946000 13054000 0 0 0 5041500 7722200 8843900 0 0 0 10093000 14335000 11989000 0 0 0 13875 134 13529 260770;260771;260772;260773;260774;260775;260776;260777;260778;260779;260780;260781;260782;260783;260784;260785;260786;260787;260788;260789;260790;260791 159965;159966;159967 159965 2 LVAEHFDWCHTIDR Unmodified 1797.8257 0.82568781 1709 P67080 yggS UPF0001 protein YggS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 29.902 28.546 3;4 1.4329E-06 13727 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.21 99.609 593800000 20091000 20917000 20486000 0 0 0 63322000 57730000 65902000 0 0 0 31956000 38773000 36356000 0 0 0 78671000 77705000 81893000 0 0 0 13876 1709 13530 260792;260793;260794;260795;260796;260797;260798;260799;260800;260801;260802;260803;260804;260805;260806;260807;260808;260809;260810;260811;260812;260813;260814;260815 159968;159969;159970;159971;159972;159973;159974;159975;159976;159977;159978;159979;159980;159981;159982;159983 159968 16 LVAEQIEAAGGVAK Unmodified 1354.7456 0.7456298 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.67 26.523 2 2.1461E-11 12190 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 175.86 168.49 215880000 43407000 37564000 38027000 0 0 0 13393000 12464000 10240000 0 0 0 6030400 8026200 5607800 0 0 0 13378000 10462000 17282000 0 0 0 13877 118 13531 260816;260817;260818;260819;260820;260821;260822;260823;260824;260825;260826;260827 159984;159985;159986;159987;159988;159989;159990;159991 159987 8 LVAIDIAPVDYHVR Unmodified 1579.8722 0.8722273 1766 P75736 ybfF Esterase YbfF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 39.62 37.927 2;3 2.1395E-06 18388 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.25 124.85 782010000 94628000 102970000 79577000 1193700 1229900 1158400 66976000 61332000 61539000 0 0 0 41260000 44256000 47736000 0 0 0 61427000 60538000 54930000 0 1262500 0 13878 1766 13532 260828;260829;260830;260831;260832;260833;260834;260835;260836;260837;260838;260839;260840;260841;260842;260843;260844;260845;260846;260847;260848;260849;260850;260851;260852;260853;260854;260855 159992;159993;159994;159995;159996;159997;159998;159999;160000;160001;160002;160003;160004;160005;160006;160007;160008 160003 17 LVALEDGVSLLNR Unmodified 1397.7878 0.78782897 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 2 2 2 2 1 1 2 1 1 45.127 43.639 2;3 5.4252E-05 21246 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.02 112.77 335340000 8350100 8341300 8841600 0 0 0 40172000 31324000 37268000 0 0 0 27984000 21089000 18640000 0 0 0 48986000 39807000 44542000 0 0 0 13879 1371 13533 260856;260857;260858;260859;260860;260861;260862;260863;260864;260865;260866;260867;260868;260869;260870;260871;260872 160009;160010;160011 160010 3 LVAMGGIGHTSCLYTDQDNQPAR Unmodified 2503.1584 0.15839127 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 4 2 3 3 3 3 3 4 4 3 3 3 1 1 1 3 3 3 3 3 3 29.85 28.39 2;3;4 5.6389E-103 13432 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 440.12 428.65 7485600000 523160000 515920000 471450000 270570000 214830000 224830000 811190000 789030000 730450000 176970000 159400000 164970000 315560000 321420000 308560000 6103800 5468000 3929000 298200000 303490000 306080000 182970000 180490000 200560000 13880 548 13534 260873;260874;260875;260876;260877;260878;260879;260880;260881;260882;260883;260884;260885;260886;260887;260888;260889;260890;260891;260892;260893;260894;260895;260896;260897;260898;260899;260900;260901;260902;260903;260904;260905;260906;260907;260908;260909;260910;260911;260912;260913;260914;260915;260916;260917;260918;260919;260920;260921;260922;260923;260924;260925;260926;260927;260928;260929;260930;260931;260932;260933;260934;260935;260936;260937;260938;260939;260940;260941 160012;160013;160014;160015;160016;160017;160018;160019;160020;160021;160022;160023;160024;160025;160026;160027;160028;160029;160030;160031;160032;160033;160034;160035;160036;160037;160038;160039;160040;160041;160042;160043;160044;160045;160046;160047;160048;160049;160050;160051;160052;160053;160054;160055;160056;160057;160058;160059;160060;160061;160062;160063;160064;160065;160066;160067;160068;160069;160070;160071;160072;160073;160074;160075 160030 63 LVAMGGIGHTSCLYTDQDNQPAR Oxidation (M) 2519.1533 0.15330589 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 1 1 3 1 3 3 3 1 26.13 24.619 3 7.1797E-07 8228 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 105 97.286 78514000 0 0 0 7563300 3132400 2781600 34212000 9153700 0 8121800 6623100 5723000 0 0 0 0 0 0 0 0 0 1203000 0 0 13881 548 13534 260942;260943;260944;260945;260946;260947;260948;260949;260950;260951;260952;260953;260954;260955;260956;260957;260958;260959;260960 160076;160077;160078;160079;160080;160081;160082;160083;160084 160076 334 8 LVAPQACWPEAALVTECR Unmodified 2070.0027 0.002665897 89 P04391 argI Ornithine carbamoyltransferase chain I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 46.576 45.337 2 7.9432E-07 22240 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.86 127.86 23344000 7299600 9206300 6838200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13882 89 13535 260961;260962;260963 160085;160086;160087 160085 3 LVASQPADWDR Unmodified 1256.6149 0.61494998 1516 P39265 alsB D-allose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS 1 1 24.359 23.531 2 3.5976E-07 10313 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.48 120.51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13883 1516 13536 260964;260965 160088;160089 160089 2 LVASQPADWDRIK Unmodified 1497.794 0.79397698 1516 P39265 alsB D-allose-binding periplasmic protein yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 46.279 46.401 3 0.10754 17679 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 21.301 17.723 12772000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3544800 4037300 5189800 0 0 0 0 0 0 13884 1516 13537 260966;260967;260968 160090 160090 1 LVATDTIYPHTGQAAK Unmodified 1684.8784 0.87843489 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 20.639 21.041 2;3 1.8416E-13 7956 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 164.9 156.6 1253700000 99546000 90790000 77056000 0 0 0 116550000 106700000 92703000 0 0 0 87773000 94267000 86449000 0 0 0 136950000 125280000 139630000 0 0 0 13885 1586 13538 260969;260970;260971;260972;260973;260974;260975;260976;260977;260978;260979;260980;260981;260982;260983;260984;260985;260986;260987;260988;260989;260990;260991;260992 160091;160092;160093;160094;160095;160096;160097;160098;160099;160100;160101 160101 11 LVAVGNTFVYPIAGYSK Unmodified 1797.9665 0.96652161 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 47.366 45.911 2;3 2.4154E-09 22478 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 158.2 154.09 357470000 29330000 30038000 27288000 17038000 17072000 16032000 1547700 0 0 39728000 35293000 33965000 8792200 7974100 10471000 4313800 0 2981900 11072000 15519000 17512000 10418000 11069000 10015000 13886 1321 13539 260993;260994;260995;260996;260997;260998;260999;261000;261001;261002;261003;261004;261005;261006;261007;261008;261009;261010;261011;261012;261013;261014;261015;261016;261017;261018;261019;261020 160102;160103;160104;160105;160106;160107;160108;160109;160110;160111;160112;160113;160114;160115;160116;160117;160118 160113 17 LVAVGNTFVYPIAGYSKK Unmodified 1926.0615 0.06148463 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 36.141 34.245 3;4 0.11617 14918 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 25.824 25.824 18386000 0 0 0 1958800 2189200 2143900 0 0 0 3501100 3135200 3029300 0 0 0 0 0 0 0 0 0 1340900 0 1087200 13887 1321 13540 261021;261022;261023;261024;261025;261026;261027;261028 160119;160120 160119 2 LVAVPHSK Unmodified 849.50724 0.50723743 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.876 12.615 2 0.0031357 3416 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.662 91.418 1343900000 94863000 67145000 69321000 2372000 1574400 1606400 77427000 95677000 101670000 2447400 1940300 1363700 148220000 175300000 170840000 0 0 0 105440000 113630000 112210000 0 855720 0 13888 325 13541 261029;261030;261031;261032;261033;261034;261035;261036;261037;261038;261039;261040;261041;261042;261043;261044;261045;261046;261047 160121;160122;160123;160124;160125;160126;160127;160128;160129;160130;160131 160121 9 LVAVVPSPSWGR Unmodified 1266.7085 0.70845643 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.922 37.248 2 5.0798E-07 18429 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.56 143.4 1280900000 138220000 133200000 116480000 0 0 0 96912000 101910000 111720000 0 0 0 79794000 86095000 84366000 0 0 0 115400000 119860000 96908000 0 0 0 13889 1298 13542 261048;261049;261050;261051;261052;261053;261054;261055;261056;261057;261058;261059 160132;160133;160134;160135;160136;160137;160138;160139;160140;160141 160133 7 LVCGDVGFGK Unmodified 1050.5168 0.51681584 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.791 23.042 2 0.00062224 9937 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 91.069 73.704 182800000 26233000 22070000 16683000 0 0 0 16521000 12895000 11216000 0 0 480170 9342000 10111000 10672000 2105400 1569200 2273200 12983000 13432000 14216000 0 0 0 13890 1355 13543 261060;261061;261062;261063;261064;261065;261066;261067;261068;261069;261070;261071;261072;261073;261074;261075 160142;160143;160144;160145;160146;160147;160148 160145 7 LVCVGSEEK Unmodified 1019.4957 0.49574604 128 P06715 gor Glutathione reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.368 14.256 2 7.9119E-05 4155 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 141.52 125.37 1264100000 44271000 113760000 99736000 0 581130 0 130430000 129210000 125070000 0 0 0 122090000 83492000 72512000 0 0 0 110080000 120830000 112060000 0 0 0 13891 128 13544 261076;261077;261078;261079;261080;261081;261082;261083;261084;261085;261086;261087;261088 160149 160149 1 LVDAEGLINR Unmodified 1098.6033 0.60332266 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.633 29.041 2 9.4878E-07 13065 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 170.22 135.41 334270000 38691000 37551000 32150000 13095000 13535000 13357000 12782000 13052000 11975000 6530900 1114700 1004800 14852000 14133000 14476000 0 0 0 24478000 27150000 22546000 7757000 7167900 6870700 13892 335 13545 261089;261090;261091;261092;261093;261094;261095;261096;261097;261098;261099;261100;261101;261102;261103;261104;261105;261106;261107;261108;261109 160150;160151;160152;160153;160154;160155;160156;160157;160158;160159;160160;160161;160162 160161 12 LVDAGVK Unmodified 700.41194 0.41194006 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.228 13.044 2 0.019776 3793 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.374 8.9757 535990000 27738000 24620000 28089000 2762400 0 0 0 27015000 26555000 0 0 0 27529000 107590000 122450000 0 0 0 46122000 44405000 41659000 0 9457300 0 13893 863 13546 261110;261111;261112;261113;261114;261115;261116;261117;261118;261119;261120;261121;261122 160163 160163 1 LVDAINQLR Unmodified 1040.5978 0.59784335 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 2 1 2 1 28.577 27.119 2 2.9459E-05 11788 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 154.31 84.04 3422200000 0 0 0 0 0 0 680630000 680830000 651090000 3190400 0 5231500 429700000 0 415110000 0 0 4315500 80528000 456660000 0 0 11849000 3093300 13894 697 13547 261123;261124;261125;261126;261127;261128;261129;261130;261131;261132;261133;261134;261135;261136;261137;261138;261139;261140 160164;160165;160166;160167;160168;160169;160170;160171;160172;160173;160174;160175 160174 8 LVDALASSAEIEK Unmodified 1344.7137 0.71366097 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 30.903 28.762 2 3.9666E-06 10995 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 129.89 102.77 35004000 0 0 0 2777600 0 0 0 0 0 8923800 8877000 8890000 0 0 0 0 0 0 0 0 0 5535800 0 0 13895 188 13548 261141;261142;261143;261144;261145 160176;160177;160178 160177 3 LVDAVVNAVEHYNEIKPQLLTTGGTSDGR Unmodified 3095.5887 0.58874181 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 47.91 46.47 4 2.5907E-16 22603 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 145.87 145.14 317800000 0 0 0 0 0 0 25987000 40092000 29468000 0 0 0 26371000 29133000 22273000 0 0 0 48807000 52141000 43526000 0 0 0 13896 849 13549 261146;261147;261148;261149;261150;261151;261152;261153;261154 160179;160180 160179 2 LVDCVIVATPNYLHK Unmodified 1740.9233 0.92327659 1529 P39353 yjhC Uncharacterized oxidoreductase YjhC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.984 33.527 3 0.00015249 15956 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.415 73.415 153030000 19716000 22586000 16782000 0 0 0 16543000 15324000 15554000 0 0 0 5872000 5302900 7843900 0 0 0 9174600 9832900 8500700 0 0 0 13897 1529 13550 261155;261156;261157;261158;261159;261160;261161;261162;261163;261164;261165;261166 160181;160182;160183;160184;160185;160186 160185 1 LVDGDELIGVDLTSGEDEVMLFSAEGK Unmodified 2837.3528 0.35283637 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.304 53.851 2 4.777E-07 25750 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 131.18 123.95 108580000 8828000 11801000 13266000 0 0 0 8777700 0 4701400 0 0 0 14088000 3736900 10042000 0 0 0 19311000 0 14026000 0 0 0 13898 882 13551 261167;261168;261169;261170;261171;261172;261173;261174;261175;261176 160187 160187 1 LVDGRFPDYR Unmodified 1236.6251 0.62512073 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 3 4 1 1 1 24.363 23.01 2;3 8.1805E-05 8406 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 98.249 89.736 2361100000 0 0 0 0 0 0 0 0 0 1016500000 643000000 696110000 0 0 0 0 0 0 0 1432800 0 4037400 0 0 13899 497 13552 261177;261178;261179;261180;261181;261182;261183;261184;261185;261186;261187;261188;261189 160188;160189;160190;160191;160192;160193;160194;160195;160196;160197;160198 160196 11 LVDGRFPDYRR Unmodified 1392.7262 0.72623176 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 18.663 18.484 3 0.00013989 5704 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 100.72 90.67 819160000 0 0 0 0 0 0 0 0 0 245190000 310970000 263000000 0 0 0 0 0 0 0 0 0 0 0 0 13900 497 13553 261190;261191;261192 160199;160200;160201 160199 3 LVDIEQVSSTHAK Unmodified 1425.7464 0.74635808 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 4 3 2 6 3 5 14 17 17 5 3 4 38 42 34 4 4 4 17 21 19 28.558 28.097 2;3;4 9.653E-11 6702 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 155.15 128.04 135030000000 1859600000 1535800000 1700400000 141000000 115890000 141220000 1435800000 1431700000 1529500000 9212500000 8375500000 6986200000 1581600000 1486900000 1671900000 22250000000 18086000000 18413000000 1620400000 1517900000 1828900000 11102000000 10451000000 10558000000 13901 383 13554 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160202;160203;160204;160205;160206;160207;160208;160209;160210;160211;160212;160213;160214;160215;160216;160217;160218;160219;160220;160221;160222;160223;160224;160225;160226;160227;160228;160229;160230;160231;160232;160233;160234;160235;160236;160237;160238;160239;160240;160241;160242;160243;160244;160245;160246;160247;160248;160249;160250;160251;160252;160253;160254;160255;160256;160257;160258;160259;160260;160261;160262;160263;160264;160265;160266;160267;160268;160269;160270;160271;160272;160273;160274;160275;160276;160277;160278;160279;160280;160281;160282;160283;160284;160285;160286;160287;160288;160289;160290;160291;160292;160293;160294;160295;160296;160297;160298;160299;160300;160301;160302;160303;160304;160305;160306;160307;160308;160309;160310;160311;160312;160313;160314;160315;160316;160317;160318;160319;160320;160321;160322;160323;160324;160325;160326;160327;160328;160329;160330;160331;160332;160333;160334;160335;160336;160337;160338;160339;160340;160341;160342;160343;160344;160345;160346;160347;160348;160349;160350;160351;160352;160353;160354;160355;160356;160357;160358;160359;160360;160361;160362;160363;160364;160365;160366;160367;160368;160369;160370;160371;160372;160373;160374;160375;160376;160377;160378;160379;160380;160381;160382;160383;160384;160385;160386;160387;160388;160389;160390;160391;160392;160393;160394;160395;160396;160397;160398;160399;160400;160401;160402;160403;160404;160405;160406;160407;160408;160409;160410;160411;160412;160413;160414;160415;160416;160417;160418;160419;160420 160247 211 LVDITMTQNQITYDR Unmodified 1809.8931 0.89309867 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.02 36.346 2 7.6112E-27 16857 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 227.2 212.05 447920000 29604000 26000000 27219000 0 0 0 32075000 35252000 31038000 0 0 0 49748000 39834000 40216000 0 0 0 49417000 43401000 44115000 0 0 0 13902 1073 13555 261466;261467;261468;261469;261470;261471;261472;261473;261474;261475;261476;261477 160421;160422;160423;160424;160425;160426;160427;160428;160429 160429 5 LVDIVEPTEK Unmodified 1141.6231 0.62305505 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.838 25.678 2 5.0638E-05 9681 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 135.71 88.644 9708500000 1228400000 1180000000 1083800000 60406000 64067000 58212000 450770000 403770000 367350000 223820000 205820000 185320000 463870000 474240000 509840000 58340000 41886000 42416000 787790000 786800000 758530000 99150000 93469000 80412000 13903 365 13556 261478;261479;261480;261481;261482;261483;261484;261485;261486;261487;261488;261489;261490;261491;261492;261493;261494;261495;261496;261497;261498;261499;261500;261501 160430;160431;160432;160433;160434;160435;160436;160437;160438;160439;160440;160441;160442;160443;160444;160445;160446;160447;160448;160449 160432 20 LVDKVIGITNEEAISTAR Unmodified 1928.0579 0.057855815 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 32.128 30.476 3 6.3002E-05 14761 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 77.031 72.592 41475000 0 0 0 0 0 0 11449000 7493900 5836300 4954000 0 0 2431700 4485800 0 0 0 0 0 4824600 0 0 0 0 13904 666 13557 261502;261503;261504;261505;261506;261507;261508;261509 160450;160451;160452 160452 3 LVDLIGR Unmodified 784.48069 0.48068833 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.445 28.15 2 0.0012721 13080 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.94 36.984 975890000 179330000 140230000 142380000 843730 917700 903160 93366000 77479000 71612000 0 0 0 33345000 37262000 36350000 0 0 0 56518000 56039000 49308000 0 0 0 13905 218 13558 261510;261511;261512;261513;261514;261515;261516;261517;261518;261519;261520;261521;261522;261523;261524 160453;160454;160455 160453 3 LVDLPGYGYAEVPEEMK Unmodified 1908.9179 0.91791644 269 P0A6P7 engB Probable GTP-binding protein EngB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 45.904 44.384 2 1.4012E-08 21797 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.39 106.38 90470000 15832000 13338000 12651000 0 0 0 4852700 3962200 6201300 0 0 1733600 5056300 5078800 4596300 0 0 0 5752900 6800700 4614800 0 0 0 13906 269 13559 261525;261526;261527;261528;261529;261530;261531;261532;261533;261534;261535;261536;261537 160456;160457;160458 160456 3 LVDLPGYGYAEVPEEMKR Unmodified 2065.019 0.019027468 269 P0A6P7 engB Probable GTP-binding protein EngB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.364 37.753 3 1.0348E-09 18296 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.24 117.83 515720000 69124000 76301000 47258000 1997600 2036000 2441700 27166000 24279000 22759000 17972000 15634000 9441800 27523000 25234000 23748000 7397100 6183100 5603600 22322000 29405000 27850000 9473600 6986100 7587900 13907 269 13560 261538;261539;261540;261541;261542;261543;261544;261545;261546;261547;261548;261549;261550;261551;261552;261553;261554;261555;261556;261557;261558;261559;261560;261561 160459;160460;160461;160462;160463;160464;160465;160466;160467;160468;160469;160470;160471;160472;160473;160474;160475;160476;160477;160478;160479;160480 160476 21 LVDNGAIAFIPAPFLHAVR Unmodified 2020.1258 0.12581622 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.957 51.52 3 4.5496E-10 25438 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 123.4 123.24 633220000 61661000 63050000 65680000 0 0 0 39171000 44092000 41414000 0 0 0 39389000 38553000 41568000 0 0 0 61670000 68440000 68537000 0 0 0 13908 1348 13561 261562;261563;261564;261565;261566;261567;261568;261569;261570;261571;261572;261573 160481;160482;160483;160484;160485;160486;160487;160488;160489;160490;160491;160492 160487 12 LVDQSLR Unmodified 829.46577 0.46576654 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 1 2 1 2 2 2 1 1 2 1 2 1 1 1 14.191 14.968 2 0.0017774 4868 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 123.99 31.296 791280000 127630000 107180000 103070000 701260 0 0 71136000 71201000 65025000 0 1150400 939060 41251000 30955000 35415000 0 0 0 46693000 46582000 42353000 0 0 0 13909 218 13562 261574;261575;261576;261577;261578;261579;261580;261581;261582;261583;261584;261585;261586;261587;261588;261589;261590;261591;261592;261593;261594;261595 160493;160494;160495;160496 160494 3 LVDRPTVQANEVSK Unmodified 1554.8366 0.83657007 519 P0A9H1 mug G/U mismatch-specific DNA glycosylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 2 2 2 14.598 15.361 2;3 2.4675E-08 5198 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 175.48 145.74 746140000 138830000 98060000 99478000 1695600 2037400 1795900 70965000 77574000 70365000 0 0 0 28350000 26182000 25752000 0 0 727890 37869000 35024000 31434000 0 0 0 13910 519 13563 261596;261597;261598;261599;261600;261601;261602;261603;261604;261605;261606;261607;261608;261609;261610;261611;261612;261613;261614;261615;261616;261617;261618;261619;261620;261621;261622;261623 160497;160498;160499;160500;160501;160502;160503;160504;160505;160506;160507;160508;160509;160510;160511;160512;160513;160514;160515;160516;160517;160518;160519 160497 23 LVDSILVTQ Unmodified 986.56481 0.56481189 1516 P39265 alsB D-allose-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.423 42.069 2 0.0011499 20658 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.906 88.335 22147000 4730300 4892700 4468600 0 0 0 0 0 0 0 0 0 2014400 0 0 0 0 0 0 3124000 2917100 0 0 0 13911 1516 13564 261624;261625;261626;261627;261628;261629 160520;160521 160520 2 LVDTATLEVEVLR Unmodified 1456.8137 0.81370936 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.46 43.732 2 7.0087E-07 17505 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 141.95 134.31 48867000 0 0 0 1354900 1110200 1280700 4999100 5077800 3113300 4353200 5411800 3452400 2105900 2555200 3760500 0 0 0 0 0 3074100 3331500 1990400 1895700 13912 1447 13565 261630;261631;261632;261633;261634;261635;261636;261637;261638;261639;261640;261641;261642;261643;261644;261645 160522;160523;160524;160525;160526;160527;160528 160523 3 LVDTHAIAK Unmodified 966.54983 0.54983053 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.484 13.317 2 8.5488E-05 3884 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.88 70.446 609420000 117420000 101190000 111090000 0 0 0 47309000 47105000 47258000 0 0 0 22269000 20409000 17356000 0 0 0 23951000 26562000 27497000 0 0 0 13913 218 13566 261646;261647;261648;261649;261650;261651;261652;261653;261654;261655;261656;261657 160529;160530;160531;160532;160533;160534;160535;160536;160537;160538;160539;160540 160529 12 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK Oxidation (M) 3557.6576 0.65755094 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 3 1 1 1 4 2 2 1 4 2 3 49.188 48.181 3;4 2.3927E-11 19149 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 111.24 110.6 159800000 0 0 4458700 0 0 0 0 0 0 22151000 10151000 7507100 2825800 0 0 25341000 7529500 12013000 4522800 0 0 25118000 19666000 18519000 13914 458 13567 261658;261659;261660;261661;261662;261663;261664;261665;261666;261667;261668;261669;261670;261671;261672;261673;261674;261675;261676;261677;261678;261679;261680;261681;261682 160541;160542;160543;160544;160545;160546;160547;160548;160549;160550 160546 238;239 9 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK Unmodified 3541.6626 0.66263632 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 51.414 50.29 3;4 2.0751E-44 20110 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 223.61 220.42 6080900000 193480000 172680000 201490000 0 0 0 110090000 130160000 116440000 239770000 252170000 319280000 198150000 160660000 148170000 914740000 645860000 474580000 187430000 198740000 204390000 464820000 386710000 361050000 13915 458 13567 261683;261684;261685;261686;261687;261688;261689;261690;261691;261692;261693;261694;261695;261696;261697;261698;261699;261700;261701;261702;261703;261704;261705;261706;261707;261708;261709;261710;261711;261712;261713;261714;261715;261716;261717;261718;261719;261720;261721;261722;261723;261724 160551;160552;160553;160554;160555;160556;160557;160558;160559;160560;160561;160562;160563;160564;160565;160566;160567;160568;160569;160570;160571;160572;160573;160574;160575;160576;160577;160578;160579;160580;160581;160582;160583;160584;160585;160586;160587;160588;160589;160590;160591;160592;160593;160594 160561 44 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR Unmodified 4036.9432 0.94316827 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1 2 1 4 4 3 1 1 1 4 4 5 2 2 2 4 3 3 49.525 48.439 3;4;5;6 9.8063E-48 17746 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 219.47 218.02 7826000000 118550000 106970000 75849000 0 4047900 2832200 74578000 54641000 0 746210000 624930000 577150000 70160000 56754000 66851000 987740000 1138900000 946330000 93180000 86420000 98690000 670440000 619850000 604920000 13916 458 13568 261725;261726;261727;261728;261729;261730;261731;261732;261733;261734;261735;261736;261737;261738;261739;261740;261741;261742;261743;261744;261745;261746;261747;261748;261749;261750;261751;261752;261753;261754;261755;261756;261757;261758;261759;261760;261761;261762;261763;261764;261765;261766;261767;261768;261769;261770;261771;261772;261773;261774;261775;261776;261777;261778;261779 160595;160596;160597;160598;160599;160600;160601;160602;160603;160604;160605;160606;160607;160608;160609;160610;160611;160612;160613;160614;160615;160616;160617;160618;160619;160620;160621;160622;160623;160624;160625;160626;160627;160628;160629;160630;160631;160632;160633;160634;160635;160636;160637;160638;160639;160640;160641;160642;160643;160644;160645 160612 50 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR Oxidation (M) 4052.9381 0.93808289 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 48.055 46.151 4 2.9772E-17 18801 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 112.73 111.92 70253000 0 0 0 0 0 0 0 0 0 19110000 12450000 14410000 0 0 0 0 0 0 0 0 0 13375000 0 10909000 13917 458 13568 261780;261781;261782;261783;261784 160646;160647;160648;160649;160650 160646 238;239 5 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 2 Oxidation (M) 4340.0611 0.061051577 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 2 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 39.843 38.335 5 1.2557E-17 14906 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 115.71 114.53 101120000 0 0 0 0 0 0 0 0 0 15658000 0 13383000 0 0 0 6129800 0 9876900 0 0 0 23012000 0 33058000 13918 458 13569 261785;261786;261787;261788;261789;261790 160651;160652;160653;160654;160655 160655 238;239 5 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR Oxidation (M) 4324.0661 0.066136954 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 6 7 6 5 3 5 8 43.89 42.528 4;5;6 6.9972E-38 15053 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 194.06 190.68 2354800000 0 0 0 0 0 0 0 0 0 252190000 194390000 203490000 0 0 0 443030000 355720000 338950000 0 0 0 183130000 175740000 208180000 13919 458 13569 261791;261792;261793;261794;261795;261796;261797;261798;261799;261800;261801;261802;261803;261804;261805;261806;261807;261808;261809;261810;261811;261812;261813;261814;261815;261816;261817;261818;261819;261820;261821;261822;261823;261824;261825;261826;261827;261828;261829;261830;261831;261832;261833;261834;261835;261836;261837;261838;261839;261840 160656;160657;160658;160659;160660;160661;160662;160663;160664;160665;160666;160667;160668;160669;160670;160671;160672;160673;160674;160675;160676;160677;160678;160679;160680;160681;160682;160683;160684;160685;160686;160687;160688;160689;160690;160691;160692;160693;160694;160695;160696;160697;160698;160699;160700;160701;160702;160703;160704;160705;160706;160707;160708 160675 238;239 50 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR Unmodified 4308.0712 0.071222332 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 1 7 10 7 1 1 9 11 11 1 1 1 9 9 10 48.88 47.772 3;4;5;6 3.5707E-137 17702 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 344.89 341.28 19575000000 9944700 0 0 16248000 10572000 16732000 0 0 7125900 2298700000 1685700000 1690400000 9458500 6422100 0 1333700000 665320000 4656100000 18653000 13760000 14824000 2283000000 2665300000 2173600000 13920 458 13569 261841;261842;261843;261844;261845;261846;261847;261848;261849;261850;261851;261852;261853;261854;261855;261856;261857;261858;261859;261860;261861;261862;261863;261864;261865;261866;261867;261868;261869;261870;261871;261872;261873;261874;261875;261876;261877;261878;261879;261880;261881;261882;261883;261884;261885;261886;261887;261888;261889;261890;261891;261892;261893;261894;261895;261896;261897;261898;261899;261900;261901;261902;261903;261904;261905;261906;261907;261908;261909;261910;261911;261912;261913;261914;261915;261916;261917;261918;261919;261920;261921;261922;261923;261924;261925;261926;261927;261928;261929;261930;261931;261932;261933;261934;261935;261936 160709;160710;160711;160712;160713;160714;160715;160716;160717;160718;160719;160720;160721;160722;160723;160724;160725;160726;160727;160728;160729;160730;160731;160732;160733;160734;160735;160736;160737;160738;160739;160740;160741;160742;160743;160744;160745;160746;160747;160748;160749;160750;160751;160752;160753;160754;160755;160756;160757;160758;160759;160760;160761;160762;160763;160764;160765;160766;160767;160768;160769;160770;160771;160772;160773;160774;160775;160776;160777;160778;160779;160780;160781;160782;160783;160784;160785;160786;160787;160788;160789;160790;160791;160792;160793;160794;160795;160796;160797;160798;160799;160800 160784 87 LVEEGTDPAYAEK Unmodified 1420.6722 0.67219008 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 18.003 18.606 2 5.0811E-06 6900 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.01 91.321 260250000 53644000 54420000 46725000 0 0 0 21707000 21196000 19200000 0 0 0 6216100 5974300 5956400 0 0 0 7459900 9049600 8705700 0 0 0 13921 119 13570 261937;261938;261939;261940;261941;261942;261943;261944;261945;261946;261947;261948;261949 160801;160802;160803;160804;160805;160806;160807;160808;160809;160810;160811;160812 160807 12 LVEESDPVAELALR Unmodified 1539.8144 0.81443765 1231 P23917 mak Fructokinase yes yes 0 0 0 By MS/MS By MS/MS 1 1 42.973 40.822 2 1.413E-16 19879 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 149.96 110.94 61403000 0 0 0 0 0 0 0 61403000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13922 1231 13571 261950;261951 160813;160814 160814 2 LVEGDHNIDCK Unmodified 1298.5925 0.59249998 945 P0AFJ1 phnA Protein PhnA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 11.876 12.709 2;3 3.7211E-10 3493 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 183.72 144.76 4301300000 398220000 408410000 380110000 0 0 0 425630000 444440000 396190000 0 0 0 382410000 296580000 297770000 0 0 0 264370000 321810000 285370000 0 0 0 13923 945 13572 261952;261953;261954;261955;261956;261957;261958;261959;261960;261961;261962;261963;261964;261965;261966;261967;261968;261969;261970;261971;261972;261973;261974;261975 160815;160816;160817;160818;160819;160820;160821;160822;160823;160824;160825;160826;160827;160828;160829;160830 160820 16 LVEGGVK Unmodified 700.41194 0.41194006 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 3 4 4 3 3 2 3 3 2 3 2 2 2 4 4 2 2 2 2 2 2 2 2 3 11.888 12.525 1;2 0.002549 2421 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 111.69 24.106 7584800000 99067000 2102200000 1882900000 24336000 24345000 16067000 512540000 451400000 388430000 138210000 112810000 119810000 174470000 211990000 218260000 166070000 155650000 153960000 191390000 167520000 160280000 37129000 39152000 36860000 13924 1745 13573 261976;261977;261978;261979;261980;261981;261982;261983;261984;261985;261986;261987;261988;261989;261990;261991;261992;261993;261994;261995;261996;261997;261998;261999;262000;262001;262002;262003;262004;262005;262006;262007;262008;262009;262010;262011;262012;262013;262014;262015;262016;262017;262018;262019;262020;262021;262022;262023;262024;262025;262026;262027;262028;262029;262030;262031;262032;262033;262034;262035;262036;262037;262038 160831;160832;160833;160834;160835;160836;160837;160838;160839;160840;160841;160842;160843;160844 160838 13 LVEGTQGIGVVLAETR Unmodified 1640.9097 0.90973501 1043 P0C0U4 rimK Ribosomal protein S6--L-glutamate ligase yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 41.76 39.872 2 2.7389E-08 15705 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 121.4 107.89 16263000 0 2236400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4617600 4702100 4706700 13925 1043 13574 262039;262040;262041;262042 160845 160845 1 LVELAAR Unmodified 770.46504 0.46503826 1791 P75931 yceM Putative oxidoreductase YceM yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 15.618 16.3 2 0.0059292 5677 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.596 16.598 215070000 0 8925600 4342700 0 0 0 201800000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13926 1791 13575 262043;262044;262045 160846 160846 1 LVELGAK Unmodified 728.44324 0.44324019 1102 P15042 ligA DNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 2 2 1 1 1 1 1 1 16.495 17.092 2 0.011149 5631 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.086 19.093 387920000 20501000 20017000 26967000 0 0 0 40636000 35381000 42977000 1316700 0 1313000 32722000 27950000 24554000 5668900 6843500 7099700 32076000 31282000 30616000 0 0 0 13927 1102 13576 262046;262047;262048;262049;262050;262051;262052;262053;262054;262055;262056;262057;262058;262059;262060;262061;262062;262063;262064;262065 160847;160848;160849;160850;160851;160852;160853;160854;160855;160856;160857;160858;160859 160857 11 LVELMPQSR Unmodified 1071.5747 0.57466507 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 27.506 26.519 2 0.00043328 11635 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 112.84 75.821 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13928 1509 13577 262066;262067;262068;262069;262070;262071;262072 160860;160861;160862;160863;160864;160865;160866 160864 7 LVENLFSR Unmodified 976.53418 0.53418046 711 P0ACA1 yibF Uncharacterized GST-like protein YibF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.53 31.063 2 0.000824 14887 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.62 47.284 484330000 47715000 51081000 45393000 1895600 1242800 842600 48175000 39899000 37441000 2095200 1489700 1577200 23083000 22353000 25741000 0 0 572980 44492000 46216000 43028000 0 0 0 13929 711 13578 262073;262074;262075;262076;262077;262078;262079;262080;262081;262082;262083;262084;262085;262086;262087;262088;262089;262090;262091 160867;160868;160869;160870;160871;160872;160873;160874;160875;160876 160869 10 LVEQLCQR Unmodified 1044.5386 0.53861391 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.762 17.519 2 0.00099954 6373 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.19 71.062 106440000 13747000 10876000 9864400 0 0 0 10731000 12325000 10673000 0 0 0 3785600 3215800 3529200 0 0 0 10192000 10473000 7024500 0 0 0 13930 134 13579 262092;262093;262094;262095;262096;262097;262098;262099;262100;262101;262102;262103 160877;160878;160879;160880;160881;160882;160883;160884;160885 160878 2 LVEVIHQR Unmodified 992.57671 0.57671398 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.671 14.537 2 6.3491E-05 4531 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 168.38 126.88 399550000 40973000 65265000 52751000 0 0 0 33561000 35991000 31838000 0 0 0 20395000 19325000 16962000 0 0 0 27218000 23864000 31403000 0 0 0 13931 1233 13580 262104;262105;262106;262107;262108;262109;262110;262111;262112;262113;262114;262115 160886;160887;160888;160889;160890;160891;160892;160893;160894;160895;160896;160897 160891 12 LVEVLESPR Unmodified 1040.5866 0.58660996 1035 P0C077 relE mRNA interferase RelE yes yes 0 0 0 By MS/MS 1 26.605 25.716 2 0.00071249 11096 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 101.72 72.305 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13932 1035 13581 262116 160898 160898 1 LVEVPVGFK Unmodified 986.58007 0.58006802 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 1 1 1 35.207 33.761 2 0.00092123 15118 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 97.798 83.263 1226800000 123550000 122210000 65735000 0 0 0 115550000 109950000 105500000 0 0 0 80589000 86189000 82209000 0 0 0 121710000 108870000 104730000 0 0 0 13933 1450 13582 262117;262118;262119;262120;262121;262122;262123;262124;262125;262126;262127;262128;262129;262130 160899;160900;160901;160902;160903;160904;160905;160906;160907;160908;160909;160910;160911 160910 13 LVEYHQMTAPLIGYYSK Oxidation (M) 2028.0026 0.002649122 1733 P69441 adk Adenylate kinase yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 32.174 30.813 3 0.00010412 13900 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 72.184 68.69 168160000 12292000 0 7585900 0 0 0 15315000 15133000 17327000 0 0 0 19501000 20707000 18909000 0 0 0 12729000 14858000 13801000 0 0 0 13934 1733 13583 262131;262132;262133;262134;262135;262136;262137;262138;262139;262140;262141 160912;160913;160914;160915;160916;160917;160918;160919 160918 594 8 LVEYHQMTAPLIGYYSK Unmodified 2012.0077 0.0077344999 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 38.299 36.624 2;3 2.005E-32 18243 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 247.93 243.96 8891900000 767380000 793720000 808320000 897280 0 0 702030000 665070000 646650000 0 0 0 653820000 710940000 578760000 0 0 0 841760000 900310000 822230000 0 0 0 13935 1733 13583 262142;262143;262144;262145;262146;262147;262148;262149;262150;262151;262152;262153;262154;262155;262156;262157;262158;262159;262160;262161;262162;262163;262164;262165;262166 160920;160921;160922;160923;160924;160925;160926;160927;160928;160929;160930;160931;160932;160933;160934;160935;160936;160937;160938;160939;160940;160941;160942;160943 160920 24 LVFDLQSK Unmodified 948.52803 0.52803245 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.09 31.441 2 0.0010066 14973 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.89 101.36 189670000 14557000 12751000 14016000 0 0 1037600 14442000 11539000 10045000 3412400 3284400 2901900 14039000 15509000 15166000 0 0 0 16789000 18534000 18660000 0 2981500 0 13936 1617 13584 262167;262168;262169;262170;262171;262172;262173;262174;262175;262176;262177;262178;262179;262180;262181;262182;262183 160944;160945;160946;160947;160948;160949;160950;160951;160952;160953;160954;160955 160947 9 LVFFFDEAHLLFNDAPQVLLDK Unmodified 2590.3472 0.34716154 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.507 54.05 3 0.12444 26966 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 33.794 31.182 169800000 38803000 30072000 37076000 0 0 0 0 12899000 17447000 0 0 0 8515400 4352100 3744800 0 0 0 7853000 0 9042800 0 0 0 13937 1528 13585 262184;262185;262186;262187;262188;262189;262190;262191;262192;262193 160956 160956 0 LVFITDTVQPVINQGGTK Unmodified 1929.0571 0.057127533 1931 P77717 ybaY Uncharacterized lipoprotein YbaY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 1 45.553 43.841 2;3 1.5527E-29 21785 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 266.85 266.85 933350000 187870000 160090000 147230000 33738000 29667000 29356000 50205000 34188000 34737000 28556000 26968000 31502000 10755000 11010000 10189000 0 0 0 32203000 24565000 34297000 5686400 5058300 5478600 13938 1931 13586 262194;262195;262196;262197;262198;262199;262200;262201;262202;262203;262204;262205;262206;262207;262208;262209;262210;262211;262212;262213;262214;262215;262216;262217;262218;262219;262220;262221;262222;262223 160957;160958;160959;160960;160961;160962;160963;160964;160965;160966;160967;160968;160969;160970;160971;160972;160973;160974;160975;160976;160977;160978;160979 160962 21 LVFSKPQDR Unmodified 1088.5978 0.59784335 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 14.413 14.979 2;3 0.00016832 3901 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 136.8 123.76 7868600000 37512000 40995000 38515000 1700900 1365300 1518800 59681000 69527000 62336000 845970000 674680000 744200000 51054000 48721000 53989000 1258700000 854380000 947980000 85019000 70876000 75146000 630280000 620480000 593900000 13939 1616 13587 262224;262225;262226;262227;262228;262229;262230;262231;262232;262233;262234;262235;262236;262237;262238;262239;262240;262241;262242;262243;262244;262245;262246;262247;262248;262249;262250;262251;262252;262253;262254;262255;262256;262257;262258;262259;262260;262261;262262;262263;262264;262265;262266;262267;262268 160980;160981;160982;160983;160984;160985;160986;160987;160988;160989;160990;160991;160992;160993;160994;160995;160996;160997;160998;160999;161000;161001;161002;161003;161004;161005;161006;161007;161008;161009;161010;161011;161012;161013;161014;161015;161016;161017;161018;161019;161020;161021 160981 42 LVFVDGR Unmodified 804.44939 0.4493882 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.693 25.52 2 0.064543 11880 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 71.715 46.096 215040000 23914000 22914000 19138000 396980 0 0 23918000 23625000 26779000 0 1010100 0 8866600 9334500 8766900 0 0 0 13051000 15897000 17431000 0 0 0 13940 1926 13588 262269;262270;262271;262272;262273;262274;262275;262276;262277;262278;262279;262280;262281;262282 161022 161022 0 LVGAAAER Unmodified 785.43955 0.43955179 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.802 12.412 2 0.00062514 3304 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130.04 67.701 3763800000 0 0 0 3369800 2914100 4363800 538770000 519960000 510700000 9922500 11496000 11427000 375800000 351650000 292640000 4523300 3535200 3136600 383920000 350960000 367370000 0 9378400 7996200 13941 1806 13589 262283;262284;262285;262286;262287;262288;262289;262290;262291;262292;262293;262294;262295;262296;262297;262298;262299;262300;262301;262302 161023;161024;161025;161026;161027;161028;161029;161030;161031 161023 9 LVGAPPGYVGYEEGGYLTEAVR Unmodified 2296.1376 0.1375627 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 1 2 2 2 2 2 2 1 1 1 45.969 44.318 2;3 6.5305E-15 21908 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 197.06 190.33 612340000 39910000 32768000 65488000 2511800 3372900 1232500 108910000 111990000 51456000 7695900 4872900 5915800 35809000 36332000 37131000 0 0 0 19367000 23713000 23859000 0 0 0 13942 1662 13590 262303;262304;262305;262306;262307;262308;262309;262310;262311;262312;262313;262314;262315;262316;262317;262318;262319;262320;262321;262322;262323;262324;262325;262326;262327;262328;262329;262330;262331 161032;161033;161034;161035;161036;161037;161038;161039;161040;161041;161042;161043;161044;161045;161046;161047;161048;161049;161050;161051 161038 17 LVGEGSSVR Unmodified 902.48214 0.48214489 419 P0A8D0 nrdR Transcriptional repressor NrdR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.302 13.034 2 1.7675E-05 3672 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.34 97.702 461890000 36750000 47921000 47519000 0 0 0 36269000 41087000 39388000 0 1080900 0 35450000 31276000 30985000 2869400 0 0 41783000 32465000 37053000 0 0 0 13943 419 13591 262332;262333;262334;262335;262336;262337;262338;262339;262340;262341;262342;262343;262344;262345 161052;161053;161054 161054 3 LVGFNLLVGGGLSIEHGNK Unmodified 1923.0578 0.057796236 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.917 47.586 3 0.0042538 22129 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 49.708 45.322 80685000 5940000 6288600 4770400 0 0 0 12685000 7992200 7742400 0 0 0 4913000 3521400 4252700 0 0 0 7310700 7829100 7439400 0 0 0 13944 1143 13592 262346;262347;262348;262349;262350;262351;262352;262353;262354;262355;262356;262357 161055;161056 161056 2 LVGFNLLVGGGLSIEHGNKK Unmodified 2051.1528 0.15275925 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.195 40.312 4 1.3493E-14 20091 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.13 141.13 368180000 22471000 20629000 17163000 584390 2599300 2216200 45025000 36070000 30443000 3021900 3169700 3008200 16230000 15575000 19279000 0 0 0 40047000 39306000 42115000 3358100 3829900 2041500 13945 1143 13593 262358;262359;262360;262361;262362;262363;262364;262365;262366;262367;262368;262369;262370;262371;262372;262373;262374;262375;262376;262377;262378 161057;161058;161059;161060;161061;161062;161063;161064;161065;161066;161067;161068;161069;161070;161071 161059 15 LVGLTGIDDAAR Unmodified 1199.651 0.65100113 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.686 32.251 2 1.1497E-06 12752 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 150.35 135.2 1853600000 104120000 95363000 94516000 0 3248300 3611100 181070000 183560000 1368600 16762000 15907000 18561000 192000000 193350000 169370000 1571900 1127100 2114100 185340000 186830000 196800000 3783500 0 3201500 13946 1880 13594 262379;262380;262381;262382;262383;262384;262385;262386;262387;262388;262389;262390;262391;262392;262393;262394;262395;262396;262397;262398;262399;262400 161072;161073;161074;161075;161076;161077;161078;161079;161080;161081;161082;161083;161084;161085;161086;161087;161088;161089 161072 17 LVGLVMTEK Unmodified 988.5627 0.5627034 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.048 28.668 2 6.314E-05 13831 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 145.63 128.67 3889900000 269140000 269100000 242890000 0 987180 881080 379100000 344160000 310780000 0 0 0 306290000 310690000 319170000 0 0 0 352010000 398450000 386250000 0 0 0 13947 1294 13595 262401;262402;262403;262404;262405;262406;262407;262408;262409;262410;262411;262412;262413;262414 161090;161091;161092;161093;161094;161095;161096;161097;161098;161099;161100;161101 161090 12 LVGPLIDVMGSAGEDLK Unmodified 1712.9019 0.90187244 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 51.945 50.576 2 0.00025706 24954 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 68.83 55.874 86248000 0 0 0 0 0 0 34316000 32501000 0 0 0 0 0 19430000 0 0 0 0 0 0 0 0 0 0 13948 59 13596 262415;262416;262417 161102;161103 161102 2 LVGPLIDVMGSAGEDLKR Unmodified 1869.003 0.002983473 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 1 2 2 2 1 1 1 2 2 2 1 4 2 3 1 1 1 44.764 43.201 2;3 8.4216E-14 17416 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 126.63 124.84 3796800000 394790000 327500000 329560000 4352500 4278000 4719200 309980000 283180000 262480000 10944000 10988000 11015000 275310000 231090000 252930000 3346700 0 0 361390000 356210000 342040000 6771000 6853700 7086100 13949 59 13597 262418;262419;262420;262421;262422;262423;262424;262425;262426;262427;262428;262429;262430;262431;262432;262433;262434;262435;262436;262437;262438;262439;262440;262441;262442;262443;262444;262445;262446;262447;262448;262449;262450;262451;262452;262453;262454;262455;262456 161104;161105;161106;161107;161108;161109;161110;161111;161112;161113;161114;161115;161116;161117;161118;161119;161120;161121;161122;161123;161124;161125;161126;161127;161128;161129;161130;161131 161105 27 LVGQNQTYTVQEGDK Unmodified 1678.8162 0.81622856 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 18.327 18.934 2 1.8741E-11 6764 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 206.97 193.88 388380000 49051000 61497000 49732000 0 0 0 57946000 65441000 51789000 0 0 0 11559000 7279100 10723000 0 0 0 9701000 0 13665000 0 0 0 13950 1831 13598 262457;262458;262459;262460;262461;262462;262463;262464;262465;262466;262467 161132;161133;161134;161135;161136;161137;161138 161137 7 LVGQNQTYTVQEGDKNLQAIAR Unmodified 2445.2612 0.26120008 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.872 27.418 3 2.6137E-43 12898 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 228.35 224.18 348440000 54356000 40306000 39535000 4310700 4242100 4616900 43274000 54257000 41413000 5748900 4530400 4289700 7383000 7568000 10169000 0 0 0 8788500 6733800 6916300 0 0 0 13951 1831 13599 262468;262469;262470;262471;262472;262473;262474;262475;262476;262477;262478;262479;262480;262481;262482;262483;262484;262485 161139;161140;161141;161142;161143;161144;161145;161146;161147;161148;161149;161150;161151;161152;161153 161143 15 LVGSSHLLTDPAK Unmodified 1336.7351 0.73506511 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 19.728 20.025 2;3 3.4692E-12 7632 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 183 173.22 1530200000 73580000 50253000 56230000 25357000 22268000 25159000 183910000 197740000 195490000 74919000 63554000 53009000 75885000 71804000 55832000 0 1170400 0 75931000 86127000 85951000 17619000 19974000 18411000 13952 122 13600 262486;262487;262488;262489;262490;262491;262492;262493;262494;262495;262496;262497;262498;262499;262500;262501;262502;262503;262504;262505;262506;262507;262508;262509;262510;262511;262512;262513;262514;262515;262516;262517;262518;262519;262520;262521;262522;262523;262524;262525;262526;262527;262528 161154;161155;161156;161157;161158;161159;161160;161161;161162;161163;161164;161165;161166;161167;161168;161169;161170;161171;161172;161173;161174;161175;161176;161177;161178;161179;161180;161181;161182;161183 161178 28 LVGSYTSPFVR Unmodified 1224.6503 0.65027285 711 P0ACA1 yibF Uncharacterized GST-like protein YibF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 2 2 2 1 2 1 1 1 27.935 27.119 2 0.00074164 14974 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.629 85.846 425040000 53365000 55768000 50212000 1005300 0 1556300 37205000 34256000 34775000 1934800 1162300 0 30351000 24151000 23899000 0 0 0 15189000 44357000 12415000 0 1382600 2055800 13953 711 13601 262529;262530;262531;262532;262533;262534;262535;262536;262537;262538;262539;262540;262541;262542;262543;262544;262545;262546;262547;262548;262549;262550;262551;262552;262553 161184;161185;161186;161187 161184 1 LVGTVNAGEEVTLLQTDANTNYAQVK Unmodified 2747.3978 0.39775314 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.367 43.686 3 1.4296E-30 17466 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 180.66 173.7 58673000 0 0 0 0 0 0 0 0 0 6023700 9465400 5661700 6347000 4663300 3528900 0 0 0 3366600 4880400 7913800 3728900 3093200 0 13954 807 13602 262554;262555;262556;262557;262558;262559;262560;262561;262562;262563;262564 161188;161189;161190 161189 3 LVGVEYDDACDPK Unmodified 1479.6552 0.65515981 93 P04816 livK Leucine-specific-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 25.179 24.274 2 0.00053296 10783 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.058 91.675 27491000 11117000 9692700 6680400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13955 93 13603 262565;262566;262567 161191;161192;161193 161192 3 LVGVIPEDQSVLR Unmodified 1423.8035 0.80347903 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.218 36.607 2 6.7002E-09 16858 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 167.09 156.34 4109800000 400260000 401230000 401580000 22983000 23549000 22602000 230870000 237690000 232010000 79950000 78043000 68318000 264840000 273570000 238350000 23725000 13470000 15467000 320460000 332400000 334130000 31140000 32541000 30580000 13956 899 13604 262568;262569;262570;262571;262572;262573;262574;262575;262576;262577;262578;262579;262580;262581;262582;262583;262584;262585;262586;262587;262588;262589;262590;262591 161194;161195;161196;161197;161198;161199;161200;161201;161202;161203;161204;161205;161206;161207;161208;161209;161210;161211;161212;161213;161214;161215;161216;161217 161217 24 LVGVVVR Unmodified 740.49086 0.49085908 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.806 21.027 2 0.017341 8228 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.833 59.485 143200000 16117000 14668000 17753000 0 0 0 8781500 9454600 10806000 2550200 0 0 8308800 7125200 7344000 1378600 1419800 1160700 13143000 10854000 10283000 0 0 2057600 13957 1459 13605 262592;262593;262594;262595;262596;262597;262598;262599;262600;262601;262602;262603;262604;262605;262606;262607;262608 161218;161219;161220;161221;161222;161223 161221 6 LVHGEEGLQAAK Unmodified 1250.6619 0.66190017 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 12.271 13.034 2;3 2.5298E-08 3732 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 167.09 155.73 3824800000 343200000 331610000 290840000 0 0 0 405120000 394640000 138840000 975510 579550 661900 338730000 304600000 317720000 0 0 0 337680000 327920000 291720000 0 0 0 13958 1024 13606 262609;262610;262611;262612;262613;262614;262615;262616;262617;262618;262619;262620;262621;262622;262623;262624;262625;262626;262627;262628;262629;262630;262631;262632;262633;262634;262635 161224;161225;161226;161227;161228;161229;161230;161231;161232;161233;161234;161235;161236;161237;161238;161239;161240;161241;161242 161231 19 LVHIPEEELLPGLEK Unmodified 1714.9505 0.9505372 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 1 1 2 2 2 1 1 2 42.567 40.617 2;3 7.2237E-05 16273 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 82.102 78.846 551810000 0 0 0 7642800 6779200 6860100 58591000 52512000 60825000 23672000 27695000 26696000 0 0 33322000 0 2603000 0 60395000 74522000 70689000 12147000 13028000 13832000 13959 1304 13607 262636;262637;262638;262639;262640;262641;262642;262643;262644;262645;262646;262647;262648;262649;262650;262651;262652;262653;262654;262655;262656;262657;262658;262659;262660;262661;262662;262663 161243;161244;161245;161246;161247;161248;161249;161250;161251;161252;161253;161254;161255 161244 13 LVHLVYDVR Unmodified 1112.6342 0.63422886 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 24.981 23.992 2;3 5.7689E-05 10977 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 147.04 147.04 1055100000 95072000 90895000 85673000 0 0 0 108970000 108660000 92464000 0 0 0 70749000 58224000 64942000 0 0 0 107680000 81545000 90219000 0 0 0 13960 111 13608 262664;262665;262666;262667;262668;262669;262670;262671;262672;262673;262674;262675;262676;262677;262678;262679;262680;262681;262682;262683;262684;262685;262686;262687 161256;161257;161258;161259;161260;161261;161262;161263;161264;161265;161266;161267;161268;161269;161270;161271;161272;161273;161274;161275;161276 161259 20 LVHRDPLPGAQQTVNTVVPPSLSAHCLK Unmodified 3033.6182 0.61820822 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 2 1 2 2 2 1 1 1 1 1 29.801 28.819 4;5 1.1092E-11 9266 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 131.94 131.32 213190000 0 0 0 0 0 0 0 0 0 0 3167700 3162400 0 60687000 28129000 29257000 21533000 28424000 0 6407100 7110700 8149200 7276000 9888800 13961 647 13609 262688;262689;262690;262691;262692;262693;262694;262695;262696;262697;262698;262699;262700;262701;262702;262703 161277;161278;161279;161280;161281;161282;161283;161284;161285 161282 9 LVHSFHSYFLRPGDSK Unmodified 1888.9584 0.95841654 1017 P0AGG2 tesB Acyl-CoA thioesterase 2 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 20.641 21.073 3 0.081581 8593 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 31.089 23.374 37515000 8039300 6628400 4925400 0 0 0 0 0 3830500 0 0 0 0 2655000 0 0 0 0 3459200 2769100 5208200 0 0 0 13962 1017 13610 262704;262705;262706;262707;262708;262709;262710;262711 161286 161286 0 LVIAVER Unmodified 798.49634 0.49633839 1240 P24193 hypE Hydrogenase isoenzymes formation protein HypE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 23.418 22.715 2 0.0028071 10137 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.61 45.349 157900000 6272700 4963500 3032100 535510 876150 849550 14791000 14243000 14302000 3345800 2193300 2909900 19119000 11343000 11925000 5496000 4040900 3974800 10603000 10360000 8385900 1839300 1187500 1307200 13963 1240 13611 262712;262713;262714;262715;262716;262717;262718;262719;262720;262721;262722;262723;262724;262725;262726;262727;262728;262729;262730;262731;262732;262733;262734;262735;262736 161287;161288;161289;161290;161291;161292;161293;161294;161295;161296 161288 10 LVIDGGR Unmodified 728.41809 0.41808807 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 15.734 16.437 2 0.10187 5370 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 53.554 24.216 25645000 0 0 0 0 497230 0 6081800 0 0 0 0 1171700 0 17894000 0 0 0 0 0 0 0 0 0 0 13964 1513 13612 262737;262738;262739;262740 161297 161297 1 LVIDLFVK Unmodified 945.5899 0.58990443 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.461 48.235 2 0.0040258 19473 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 88.942 69.096 256440000 6994000 5538600 5714600 5718700 5683700 5746200 20116000 22118000 17658000 14650000 16125000 16990000 12986000 10636000 10991000 3452400 1950800 2773900 15496000 18789000 15946000 7655300 6060900 6646100 13965 439 13613 262741;262742;262743;262744;262745;262746;262747;262748;262749;262750;262751;262752;262753;262754;262755;262756;262757;262758;262759;262760;262761;262762;262763;262764 161298;161299;161300;161301;161302;161303;161304;161305;161306;161307;161308;161309;161310;161311;161312;161313;161314;161315;161316;161317;161318 161302 21 LVIEMETNGTIDPEEAIR Unmodified 2029.0038 0.003771334 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 1 2 3 3 2 2 2 8 8 4 2 2 2 3 3 3 47.325 46.246 2;3 1.1676E-80 17834 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 324.78 311.1 924190000 8304400 9719300 6347600 0 336270 0 12720000 7777400 6770400 102050000 83724000 73615000 12279000 10263000 14715000 182800000 97060000 69050000 12745000 11914000 11032000 65688000 61189000 64087000 13966 383 13614 262765;262766;262767;262768;262769;262770;262771;262772;262773;262774;262775;262776;262777;262778;262779;262780;262781;262782;262783;262784;262785;262786;262787;262788;262789;262790;262791;262792;262793;262794;262795;262796;262797;262798;262799;262800;262801;262802;262803;262804;262805;262806;262807;262808;262809;262810;262811;262812;262813;262814;262815;262816;262817;262818;262819;262820;262821;262822 161319;161320;161321;161322;161323;161324;161325;161326;161327;161328;161329;161330;161331;161332;161333;161334;161335;161336;161337;161338;161339;161340;161341;161342;161343;161344;161345;161346;161347;161348;161349;161350;161351;161352;161353;161354;161355;161356;161357;161358;161359;161360;161361;161362;161363;161364;161365;161366;161367;161368;161369;161370;161371;161372;161373;161374;161375;161376;161377;161378;161379;161380;161381;161382;161383;161384;161385;161386;161387;161388;161389;161390;161391;161392;161393 161365 68 LVIEMETNGTIDPEEAIRR Oxidation (M) 2201.0998 0.099796984 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 1 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 2 2 34.513 33.01 3 9.301E-07 10948 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 94.882 89.672 50582000 0 0 0 0 0 0 0 0 0 3525900 1088500 0 0 0 0 9050800 7226700 8440400 0 0 0 6016200 7459800 7773900 13967 383 13615 262823;262824;262825;262826;262827;262828;262829;262830;262831;262832 161394;161395;161396;161397;161398 161396 167 5 LVIEMETNGTIDPEEAIRR Unmodified 2185.1049 0.10488236 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 10 7 5 1 11 11 11 5 5 6 43.91 42.706 2;3;4 1.1695E-23 14408 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 200.94 184.19 2378500000 0 0 0 0 2757200 2314900 26175000 0 0 204710000 184050000 176060000 0 0 1316300 394050000 337130000 422540000 0 0 0 209300000 183390000 234670000 13968 383 13615 262833;262834;262835;262836;262837;262838;262839;262840;262841;262842;262843;262844;262845;262846;262847;262848;262849;262850;262851;262852;262853;262854;262855;262856;262857;262858;262859;262860;262861;262862;262863;262864;262865;262866;262867;262868;262869;262870;262871;262872;262873;262874;262875;262876;262877;262878;262879;262880;262881;262882;262883;262884;262885;262886;262887;262888;262889;262890;262891;262892;262893;262894;262895;262896;262897;262898;262899;262900;262901;262902;262903;262904;262905;262906;262907;262908 161399;161400;161401;161402;161403;161404;161405;161406;161407;161408;161409;161410;161411;161412;161413;161414;161415;161416;161417;161418;161419;161420;161421;161422;161423;161424;161425;161426;161427;161428;161429;161430;161431;161432;161433;161434;161435;161436;161437;161438;161439;161440;161441;161442;161443;161444;161445;161446;161447;161448;161449;161450;161451;161452;161453;161454;161455;161456;161457;161458;161459 161400 53 LVIENYQGEGEMVTMPNHPNKPEMGSR Unmodified 3056.4154 0.41541059 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 30.518 29.162 3;4 6.3051E-53 13886 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 231.29 229.18 3594500000 266550000 320740000 266350000 0 0 0 307840000 271200000 280550000 0 0 0 279970000 314200000 219130000 0 0 0 372190000 291670000 404090000 0 0 0 13969 63 13616 262909;262910;262911;262912;262913;262914;262915;262916;262917;262918;262919;262920;262921;262922;262923;262924;262925;262926;262927;262928;262929;262930;262931;262932 161460;161461;161462;161463;161464;161465;161466;161467;161468;161469;161470;161471;161472;161473;161474;161475;161476;161477;161478;161479;161480;161481 161461 22 LVIESGDSAQSR Unmodified 1260.631 0.63099397 1826 P76170 ynfB UPF0482 protein YnfB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.059 16.643 2 1.1325E-08 5545 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 174.41 169.8 134060000 6741700 5820700 4700800 0 401600 0 9958700 9187800 10498000 2078700 1377800 1981500 12182000 10214000 8781800 551830 0 0 17726000 14808000 14820000 638060 844660 746710 13970 1826 13617 262933;262934;262935;262936;262937;262938;262939;262940;262941;262942;262943;262944;262945;262946;262947;262948;262949;262950;262951;262952 161482;161483;161484;161485;161486;161487;161488;161489;161490;161491;161492 161492 11 LVIGADGANSQVR Unmodified 1298.6943 0.69426293 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.605 21.648 2 1.8255E-17 8929 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 212.21 190.75 365310000 28471000 23687000 27688000 7230000 7728300 7564200 34117000 35429000 33391000 14053000 5903400 9532500 24389000 20778000 19093000 0 0 0 18480000 22404000 19756000 2796300 2819800 0 13971 1765 13618 262953;262954;262955;262956;262957;262958;262959;262960;262961;262962;262963;262964;262965;262966;262967;262968;262969;262970;262971;262972 161493;161494;161495;161496;161497;161498;161499;161500;161501;161502;161503;161504;161505;161506;161507 161498 15 LVIGADGANSWLR Unmodified 1370.7306 0.73064844 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.05 40.167 2 3.073E-12 19589 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.29 171.94 249430000 10255000 12062000 8221700 3078600 2566300 2889200 22063000 18605000 21333000 5156900 5463400 4557700 18337000 16912000 20647000 0 0 0 21882000 26673000 22488000 1723000 2153400 2366300 13972 1260 13619 262973;262974;262975;262976;262977;262978;262979;262980;262981;262982;262983;262984;262985;262986;262987;262988;262989;262990;262991;262992;262993 161508;161509;161510;161511;161512;161513 161510 6 LVIGIAAR Unmodified 811.52797 0.52797287 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.218 26.98 2 0.00031488 10057 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 146.21 117.68 345750000 9775100 10601000 7865800 8358600 7977700 7888100 33859000 31531000 33567000 25521000 20594000 21558000 17202000 17910000 14543000 3705500 3836800 4504600 13794000 17430000 14326000 7702800 6142500 5557500 13973 33 13620 262994;262995;262996;262997;262998;262999;263000;263001;263002;263003;263004;263005;263006;263007;263008;263009;263010;263011;263012;263013;263014;263015;263016;263017 161514;161515;161516;161517;161518;161519;161520;161521;161522;161523;161524;161525;161526;161527;161528;161529;161530;161531;161532;161533;161534;161535;161536;161537 161519 24 LVIIGGDHGTAGAIR Unmodified 1448.81 0.80996139 1381 P31806 nnr Bifunctional NAD(P)H-hydrate repair enzyme Nnr;ADP-dependent (S)-NAD(P)H-hydrate dehydratase;NAD(P)H-hydrate epimerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 25.024 23.914 3 0.019343 10433 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 37.555 34.688 136950000 0 39808000 28551000 0 0 0 14662000 17938000 14596000 0 0 0 0 0 0 0 0 0 10877000 10520000 0 0 0 0 13974 1381 13621 263018;263019;263020;263021;263022;263023;263024 161538;161539 161539 0 LVILDILSR Unmodified 1040.6594 0.65938097 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.22 51.981 2 4.3875E-16 25358 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 238.31 234.56 922300000 50523000 45854000 44222000 27484000 23530000 27523000 29913000 32222000 32261000 77743000 66378000 71510000 14005000 15442000 13544000 28418000 28539000 30871000 41775000 42294000 44561000 43772000 46967000 42948000 13975 1691 13622 263025;263026;263027;263028;263029;263030;263031;263032;263033;263034;263035;263036;263037;263038;263039;263040;263041;263042;263043;263044;263045;263046;263047;263048 161540;161541;161542;161543;161544;161545;161546;161547;161548;161549;161550;161551;161552;161553;161554;161555;161556;161557;161558;161559;161560;161561;161562 161552 21 LVIMGGSAGR Unmodified 959.52224 0.52223557 1200 P22564 rihC Non-specific ribonucleoside hydrolase RihC yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.773 21.829 2 0.00034545 8753 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.11 80.598 324540000 59817000 61644000 48292000 0 0 0 24119000 21689000 20943000 0 0 0 15924000 16807000 14536000 0 0 0 0 20406000 20357000 0 0 0 13976 1200 13623 263049;263050;263051;263052;263053;263054;263055;263056;263057;263058;263059 161563;161564;161565 161565 3 LVIQELQQTEK Unmodified 1327.7347 0.73473076 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 23.779 22.921 2 0.08997 6869 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 41.029 20.888 51316000 0 0 0 0 0 0 0 0 0 5382600 3940300 2826700 0 0 0 6873700 9582400 10169000 0 0 0 4294800 4035000 4211100 13977 154 13624 263060;263061;263062;263063;263064;263065;263066;263067;263068 161566;161567 161566 2 LVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMAR Unmodified 4484.1489 0.1488958 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 2 2 2 1 2 2 2 2 40.108 38.458 5;6 8.1886E-25 18806 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155.07 154.89 849420000 125930000 137230000 90826000 0 0 0 58709000 78041000 72727000 0 0 0 38271000 36724000 32938000 0 0 0 62703000 56578000 58735000 0 0 0 13978 154 13625 263069;263070;263071;263072;263073;263074;263075;263076;263077;263078;263079;263080;263081;263082;263083;263084;263085;263086;263087;263088;263089;263090 161568;161569;161570;161571;161572;161573;161574 161570 7 LVISIAK Unmodified 742.49528 0.49527576 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 25.803 24.734 1;2 0.0018344 11440 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.98 37.918 14546000000 146880000 152920000 135190000 7552300 6907200 6359100 191660000 196010000 198930000 31575000 28061000 28540000 154580000 136460000 125920000 2770300000 4702700000 4778200000 248180000 227370000 190600000 26589000 26114000 28053000 13979 36 13626 263091;263092;263093;263094;263095;263096;263097;263098;263099;263100;263101;263102;263103;263104;263105;263106;263107;263108;263109;263110;263111;263112;263113;263114;263115;263116;263117;263118;263119;263120;263121;263122;263123;263124;263125;263126;263127;263128;263129;263130;263131;263132;263133;263134;263135;263136;263137;263138;263139;263140;263141 161575;161576;161577;161578;161579;161580;161581;161582;161583;161584;161585;161586;161587;161588;161589;161590;161591;161592;161593;161594;161595;161596;161597;161598;161599;161600;161601;161602;161603;161604;161605;161606;161607;161608 161592 33 LVITPVDGSDPYEEMIPK Oxidation (M) 2017.9918 0.99180966 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 5 5 4 6 6 6 4 4 42.329 40.914 2;3 2.3326E-09 16103 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 121.28 120.94 933840000 0 0 0 0 1001900 0 0 0 0 85108000 75458000 82818000 0 0 0 200590000 104980000 103250000 0 0 0 103140000 92495000 84989000 13980 458 13627 263142;263143;263144;263145;263146;263147;263148;263149;263150;263151;263152;263153;263154;263155;263156;263157;263158;263159;263160;263161;263162;263163;263164;263165;263166;263167;263168;263169;263170;263171;263172;263173;263174;263175;263176;263177;263178;263179;263180;263181;263182;263183;263184;263185;263186 161609;161610;161611;161612;161613;161614;161615;161616;161617;161618;161619;161620;161621;161622;161623;161624;161625;161626;161627;161628;161629;161630;161631;161632;161633;161634;161635;161636;161637;161638;161639;161640;161641;161642;161643;161644;161645;161646;161647;161648;161649;161650;161651;161652;161653;161654;161655 161614 240 47 LVITPVDGSDPYEEMIPK Unmodified 2001.9969 0.99689504 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 3 4 4 2 2 2 5 4 3 2 2 2 3 4 4 49.663 48.54 2;3 6.3415E-10 19192 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 130.15 127.38 34301000000 298230000 295290000 256110000 19000000 19150000 16827000 189640000 171200000 171960000 2560700000 2391900000 2474100000 226160000 201300000 202760000 6069100000 3948500000 4242600000 281570000 288370000 263280000 3331700000 3195700000 3186100000 13981 458 13627 263187;263188;263189;263190;263191;263192;263193;263194;263195;263196;263197;263198;263199;263200;263201;263202;263203;263204;263205;263206;263207;263208;263209;263210;263211;263212;263213;263214;263215;263216;263217;263218;263219;263220;263221;263222;263223;263224;263225;263226;263227;263228;263229;263230;263231;263232;263233;263234;263235;263236;263237;263238;263239;263240;263241;263242;263243;263244;263245;263246;263247;263248 161656;161657;161658;161659;161660;161661;161662;161663;161664;161665;161666;161667;161668;161669;161670;161671;161672;161673;161674;161675;161676;161677;161678;161679;161680;161681;161682;161683;161684;161685;161686;161687;161688;161689;161690;161691;161692;161693;161694;161695;161696;161697;161698;161699;161700;161701;161702;161703;161704;161705;161706;161707;161708;161709;161710;161711;161712;161713;161714;161715;161716;161717;161718;161719 161660 64 LVITSDEGVR Unmodified 1087.5873 0.58733824 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 22.464 22.22 2 0.00015969 8960 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.98 90.176 2531100000 933340000 805200000 726270000 2176100 2796100 3513800 8804600 3112500 0 0 0 0 0 0 0 0 0 0 17479000 15687000 12757000 0 0 0 13982 1305 13628 263249;263250;263251;263252;263253;263254;263255;263256;263257;263258;263259;263260;263261;263262 161720;161721;161722;161723;161724;161725;161726;161727;161728 161728 7 LVIWINGDK Unmodified 1056.5968 0.59678072 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 1 1 1 38.074 36.349 2 3.1513E-05 17824 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.78 149.84 2202300000 34901000 31188000 21954000 392720 519080 368090 180570000 190910000 193220000 0 0 0 218360000 187000000 196150000 0 0 0 327000000 293430000 321410000 1305900 1983800 1620600 13983 895 13629 263263;263264;263265;263266;263267;263268;263269;263270;263271;263272;263273;263274;263275;263276;263277;263278;263279;263280;263281;263282;263283;263284;263285;263286;263287;263288 161729;161730;161731;161732;161733;161734;161735;161736;161737;161738;161739;161740;161741;161742;161743;161744;161745;161746;161747 161732 16 LVIWINGDKGYNGLAEVGK Unmodified 2045.0946 0.094575672 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 2 2 1 2 2 2 1 1 42.093 40.32 2;3 6.0581E-07 20148 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.08 95.537 334460000 0 0 0 1291700 0 0 26363000 25720000 26665000 0 0 459680 32717000 36080000 26232000 0 0 0 50039000 51789000 54192000 1465200 1449900 0 13984 895 13630 263289;263290;263291;263292;263293;263294;263295;263296;263297;263298;263299;263300;263301;263302;263303;263304;263305;263306 161748;161749;161750;161751;161752;161753;161754;161755;161756;161757 161748 9 LVKEVLR Unmodified 855.55419 0.55418762 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 33.276 31.89 2 0.11846 15615 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 59.641 0.82185 69000000 2607100 2887400 0 0 0 0 36515000 0 0 0 0 0 3754800 4645100 3950200 0 0 0 4202100 4822900 5615300 0 0 0 13985 953 13631 263307;263308;263309;263310;263311;263312;263313;263314;263315 161758 161758 1 LVKGEVVASTFDEPASR Unmodified 1803.9367 0.93667805 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 1 1 1 24.157 23.112 2;3 2.1982E-06 8148 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 121.24 96.386 159270000 0 0 0 12605000 11954000 11951000 0 0 0 37016000 35516000 35693000 0 0 0 2181900 0 1583500 0 0 0 3941500 4030700 2798800 13986 982 13632 263316;263317;263318;263319;263320;263321;263322;263323;263324;263325;263326;263327;263328;263329;263330;263331 161759;161760;161761;161762;161763;161764;161765;161766;161767;161768;161769 161763 11 LVKPWVGGYTGK Unmodified 1303.7289 0.72885752 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 23.231 22.502 2;3 0.00016591 9328 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 100.48 91.944 11446000000 3322000000 2890300000 3373600000 0 0 571450 279800000 264680000 202450000 0 0 0 169940000 156530000 164350000 0 0 0 169660000 232540000 219140000 0 0 0 13987 1217 13633 263332;263333;263334;263335;263336;263337;263338;263339;263340;263341;263342;263343;263344;263345;263346;263347;263348;263349;263350;263351;263352;263353;263354;263355;263356 161770;161771;161772;161773;161774;161775;161776;161777;161778;161779;161780;161781;161782;161783;161784 161782 13 LVKPWVGGYTGKDPLDNTYTR Unmodified 2379.2223 0.22229538 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 2 3 1 2 2 3 2 3 2 32.595 31.19 2;3;4 4.2324E-27 14620 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 254.72 250.17 20787000000 5777500000 5420600000 5154300000 22267000 21213000 27704000 592350000 585600000 591320000 3336900 0 0 391450000 345910000 307140000 0 0 0 516380000 480030000 550050000 0 0 0 13988 1217 13634 263357;263358;263359;263360;263361;263362;263363;263364;263365;263366;263367;263368;263369;263370;263371;263372;263373;263374;263375;263376;263377;263378;263379;263380;263381;263382;263383;263384;263385;263386;263387;263388;263389;263390;263391;263392;263393;263394 161785;161786;161787;161788;161789;161790;161791;161792;161793;161794;161795;161796;161797;161798;161799;161800;161801;161802;161803;161804;161805;161806;161807;161808;161809;161810;161811;161812;161813;161814;161815;161816;161817 161808 33 LVLADEPTGNLDAR Unmodified 1482.7678 0.7678218 1796 P75957 lolD Lipoprotein-releasing system ATP-binding protein LolD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 28.633 27.431 2;3 2.2272E-06 11640 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 125.22 104.38 470150000 15992000 9531700 13050000 3351600 3870800 3328700 27520000 28615000 28582000 11521000 12572000 11269000 39148000 41141000 36981000 10959000 12803000 10076000 34799000 33866000 36775000 15446000 13302000 15657000 13989 1796 13635 263395;263396;263397;263398;263399;263400;263401;263402;263403;263404;263405;263406;263407;263408;263409;263410;263411;263412;263413;263414;263415;263416;263417;263418;263419;263420;263421;263422;263423;263424;263425;263426;263427;263428;263429;263430;263431;263432;263433;263434;263435 161818;161819;161820;161821;161822;161823;161824;161825;161826;161827;161828;161829;161830;161831;161832 161818 10 LVLADGLIDASAQKPEMIIDAATLTGAAK Unmodified 2895.5627 0.56270998 1456 P37095 pepB Peptidase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 53.778 52.339 2;3;4 9.6499E-67 25630 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 200.47 200.45 3417700000 186480000 192540000 180130000 0 0 0 347080000 294780000 294650000 0 0 0 362950000 337310000 311420000 0 0 0 324650000 292530000 293140000 0 0 0 13990 1456 13636 263436;263437;263438;263439;263440;263441;263442;263443;263444;263445;263446;263447;263448;263449;263450;263451;263452;263453;263454;263455;263456;263457;263458;263459;263460;263461;263462;263463;263464;263465;263466;263467;263468;263469;263470;263471 161833;161834;161835;161836;161837;161838;161839;161840;161841;161842;161843;161844;161845;161846;161847;161848;161849;161850;161851;161852;161853;161854;161855;161856;161857;161858;161859;161860;161861 161840 29 LVLANAQMVVR Unmodified 1212.7013 0.70126256 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 3 2 2 2 1 2 1 1 1 1 2 1 1 1 1 33.981 32.388 2;3 4.1964E-10 15692 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 209.12 197.27 3287800000 10960000 10225000 8488600 4448600 5295100 4166500 313840000 333980000 313880000 448550000 391260000 402950000 129980000 121590000 115460000 36828000 27520000 28656000 121880000 130650000 127070000 66665000 68989000 64489000 13991 1088 13637 263472;263473;263474;263475;263476;263477;263478;263479;263480;263481;263482;263483;263484;263485;263486;263487;263488;263489;263490;263491;263492;263493;263494;263495;263496;263497;263498;263499;263500;263501;263502;263503 161862;161863;161864;161865;161866;161867;161868;161869;161870;161871;161872;161873;161874;161875;161876;161877;161878;161879;161880;161881;161882;161883;161884;161885;161886;161887;161888;161889;161890;161891;161892;161893;161894;161895;161896;161897 161878 33 LVLANAQMVVR Oxidation (M) 1228.6962 0.69617719 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 1 1 3 2 2 28.167 26.481 2 0.00011561 9958 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 121.62 110.79 147090000 0 0 0 0 0 0 25024000 14479000 18679000 26352000 23146000 20404000 0 0 1588200 0 0 0 0 0 3378000 5365000 5280600 3397600 13992 1088 13637 263504;263505;263506;263507;263508;263509;263510;263511;263512;263513;263514;263515;263516;263517;263518;263519;263520;263521;263522;263523;263524;263525;263526 161898;161899;161900;161901;161902;161903;161904;161905;161906;161907;161908;161909;161910;161911;161912;161913 161903 485 13 LVLCDVLTYVER Unmodified 1478.7803 0.78030075 1725 P68767 pepA Cytosol aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.692 52.244 2 3.9304E-12 25671 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 236.32 230.59 134180000 22008000 21527000 21917000 0 0 0 11688000 11846000 0 0 0 0 6267700 0 0 0 0 0 15826000 11488000 11607000 0 0 0 13993 1725 13638 263527;263528;263529;263530;263531;263532;263533;263534;263535 161914;161915 161915 2 LVLDGIEVVGSLVGTR Unmodified 1625.9352 0.93522148 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.56 53.084 3 6.3363E-08 26356 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.64 100.79 83115000 23946000 16372000 15623000 0 0 0 4088300 4748900 5326100 0 0 0 0 0 0 0 0 0 3891200 5689700 3429600 0 0 0 13994 1541 13639 263536;263537;263538;263539;263540;263541;263542;263543;263544 161916 161916 1 LVLEVQQQLGGGIVR Unmodified 1607.9359 0.93589019 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 3 2 4 6 5 7 4 4 5 6 5 6 2 2 2 5 6 5 4 3 4 45.126 43.493 2;3 2.7235E-30 18886 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 241.58 216.72 2138300000 8447000 5246700 32239000 24796000 23137000 23196000 260170000 50406000 61282000 127750000 132620000 114410000 185220000 45474000 158070000 33515000 20636000 18996000 184200000 199070000 181100000 91244000 81639000 75428000 13995 646 13640 263545;263546;263547;263548;263549;263550;263551;263552;263553;263554;263555;263556;263557;263558;263559;263560;263561;263562;263563;263564;263565;263566;263567;263568;263569;263570;263571;263572;263573;263574;263575;263576;263577;263578;263579;263580;263581;263582;263583;263584;263585;263586;263587;263588;263589;263590;263591;263592;263593;263594;263595;263596;263597;263598;263599;263600;263601;263602;263603;263604;263605;263606;263607;263608;263609;263610;263611;263612;263613;263614;263615;263616;263617;263618;263619;263620;263621;263622;263623;263624;263625;263626;263627;263628;263629;263630;263631;263632;263633;263634;263635;263636;263637;263638;263639;263640;263641;263642;263643 161917;161918;161919;161920;161921;161922;161923;161924;161925;161926;161927;161928;161929;161930;161931;161932;161933;161934;161935;161936;161937;161938;161939;161940;161941;161942;161943;161944;161945;161946;161947;161948;161949;161950;161951;161952;161953;161954;161955;161956;161957;161958;161959;161960;161961;161962;161963;161964;161965;161966;161967;161968;161969;161970;161971;161972;161973;161974;161975;161976;161977;161978;161979;161980;161981;161982;161983;161984;161985;161986 161983 53 LVLGNHDLHLLAVFAGISR Unmodified 2044.1582 0.15817898 113 P05637 apaH Bis(5'-nucleosyl)-tetraphosphatase [symmetrical] yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.557 50.309 4 4.4193E-05 24502 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 80.238 80.238 119120000 13551000 17551000 12320000 0 0 0 7304600 9402000 7197500 0 0 0 6549400 5604200 6331900 0 0 0 11123000 11417000 10771000 0 0 0 13996 113 13641 263644;263645;263646;263647;263648;263649;263650;263651;263652;263653;263654;263655 161987;161988 161987 2 LVLHGDEVPER Unmodified 1262.6619 0.66190017 1915 P77544 yfcF Glutathione S-transferase YfcF yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.424 18.106 3 0.024248 6551 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 49.934 40.827 214820000 20782000 28141000 25482000 0 0 0 24458000 21311000 22142000 0 0 0 10264000 10332000 9068000 0 0 0 16085000 12481000 14275000 0 0 0 13997 1915 13642 263656;263657;263658;263659;263660;263661;263662;263663;263664;263665;263666;263667 161989 161989 0 LVLIGAGHVNR Unmodified 1147.6826 0.68257603 1953 Q46808 yqeB Uncharacterized protein YqeB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 20.642 20.772 2;3 0.00025501 6459 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 87.258 80.655 36209000 0 0 0 0 0 0 0 0 0 0 0 0 1570600 0 1286700 0 0 0 1701200 0 2230800 9995500 9296100 10128000 13998 1953 13643 263668;263669;263670;263671;263672;263673;263674;263675;263676;263677 161990;161991;161992;161993;161994 161993 5 LVLINPELLEK Unmodified 1279.7751 0.77513901 255 P0A6K3 def Peptide deformylase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.599 46.209 2 0.00015967 22948 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 109.66 98.906 970070000 98823000 82230000 87072000 0 0 0 92353000 101070000 87439000 0 0 0 68437000 55788000 57303000 0 0 0 79036000 83032000 77495000 0 0 0 13999 255 13644 263678;263679;263680;263681;263682;263683;263684;263685;263686;263687;263688;263689 161995;161996;161997;161998;161999;162000;162001;162002 161996 8 LVLLSDPVTMAR Unmodified 1313.7377 0.73770765 1645 P62517 mdoH Glucans biosynthesis glucosyltransferase H yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 43.999 41.96 2 0.037239 17204 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 63.283 44.04 29950000 0 0 0 2445100 2024200 2599300 0 0 0 5190800 4021700 5131100 0 0 0 0 0 0 0 0 0 2293100 3160300 3084000 14000 1645 13645 263690;263691;263692;263693;263694;263695;263696;263697;263698 162003;162004 162003 1 LVLLVQAVNPEFK Unmodified 1468.8654 0.865351 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.934 47.603 2;3 1.2534E-07 22998 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.71 182.71 1340400000 117210000 114610000 113060000 0 0 0 107090000 99035000 90178000 0 0 0 93011000 88882000 84669000 0 0 0 145300000 151570000 135810000 0 0 0 14001 1634 13646 263699;263700;263701;263702;263703;263704;263705;263706;263707;263708;263709;263710;263711;263712;263713;263714;263715;263716;263717;263718;263719;263720;263721;263722 162005;162006;162007;162008;162009;162010;162011;162012;162013;162014;162015;162016;162017;162018;162019;162020;162021;162022;162023;162024;162025;162026;162027;162028 162021 24 LVLNMLSTGLMIK Unmodified 1431.8193 0.81932879 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.266 51.826 2 8.7614E-07 24546 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 137.98 130.85 116030000 9713500 10165000 6737800 0 0 0 6834800 9557900 10249000 0 0 0 10707000 8810700 9405600 0 0 0 10909000 10643000 12294000 0 0 0 14002 1867 13647 263723;263724;263725;263726;263727;263728;263729;263730;263731;263732;263733;263734 162029;162030;162031;162032;162033;162034;162035;162036;162037;162038 162036 10 LVLVESPSNPLLR Unmodified 1435.8399 0.83986454 53 P00935 metB Cystathionine gamma-synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 43.267 41.653 2 1.1313E-08 20686 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 157.96 148.27 193750000 17995000 16773000 18840000 0 0 0 27048000 26830000 22192000 510510 0 0 8650700 8831500 8837000 0 0 0 15523000 10556000 11166000 0 0 0 14003 53 13648 263735;263736;263737;263738;263739;263740;263741;263742;263743;263744;263745;263746;263747 162039;162040;162041;162042;162043 162040 5 LVLVLNCGSSSLK Unmodified 1388.7697 0.76973606 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 3 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 36.914 35.327 2 3.0371E-13 17167 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 201.33 194.44 7868100000 365310000 315900000 306130000 4132200 3907900 3664500 833760000 917680000 868460000 5961400 4807600 4055900 795740000 882540000 811390000 7336300 4667200 3242800 590520000 543090000 585120000 3594400 3555100 3533900 14004 224 13649 263748;263749;263750;263751;263752;263753;263754;263755;263756;263757;263758;263759;263760;263761;263762;263763;263764;263765;263766;263767;263768;263769;263770;263771;263772;263773;263774;263775;263776;263777;263778;263779;263780;263781 162044;162045;162046;162047;162048;162049;162050;162051;162052;162053;162054;162055;162056;162057;162058;162059;162060;162061;162062;162063;162064;162065;162066;162067 162049 19 LVMAGGVSANR Unmodified 1073.5652 0.56516301 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.218 18.696 2 0.0003061 6723 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 90.906 84.081 257120000 13217000 14126000 12482000 2447800 1631900 1915500 16464000 13820000 19782000 2611600 1557700 1760700 21126000 19698000 16946000 0 0 0 38606000 28685000 30242000 0 0 0 14005 121 13650 263782;263783;263784;263785;263786;263787;263788;263789;263790;263791;263792;263793;263794;263795;263796;263797;263798;263799 162068;162069 162069 2 LVMAHAGITPQWDLQTAK Unmodified 1979.0299 0.029866925 113 P05637 apaH Bis(5'-nucleosyl)-tetraphosphatase [symmetrical] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 35.739 34.145 3 9.2763E-05 16213 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.697 71.697 174400000 29092000 29049000 17704000 0 0 0 13733000 14669000 13787000 0 0 0 0 8621000 0 0 0 0 15283000 18769000 13697000 0 0 0 14006 113 13651 263800;263801;263802;263803;263804;263805;263806;263807;263808;263809 162070;162071;162072 162072 0 LVMLTGDNPTTANAIAK Unmodified 1728.908 0.90802046 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.009 33.336 2 9.7001E-09 13007 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 158.04 143.88 93302000 4611600 5155100 5721800 2231000 2196300 2056500 12657000 11108000 9669300 7981900 6820300 8308200 2842700 2887100 2448700 0 0 0 0 3550300 3056100 0 0 0 14007 1980 13652 263810;263811;263812;263813;263814;263815;263816;263817;263818;263819;263820;263821;263822;263823;263824;263825;263826 162073;162074;162075;162076;162077;162078 162074 6 LVMNDPSEK Unmodified 1031.4957 0.49574604 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.781 15.382 2 7.9621E-05 5053 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 141.39 126.72 351660000 18587000 18838000 19372000 1463700 0 0 27753000 34359000 27140000 1284700 0 1081000 26782000 28634000 22318000 609410 0 748140 40727000 39324000 42640000 0 0 0 14008 1564 13653 263827;263828;263829;263830;263831;263832;263833;263834;263835;263836;263837;263838;263839;263840;263841;263842;263843 162079;162080;162081;162082;162083;162084;162085;162086;162087;162088;162089;162090 162083 12 LVMSCMTPASDGTFISIDDEEAK Unmodified 2516.1121 0.11207751 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 48.178 46.828 2;3 5.9378E-29 22640 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 199.37 199.37 337710000 13103000 14332000 12730000 7181700 8829600 6799700 16445000 20221000 8936600 16423000 11587000 15633000 22928000 26879000 25094000 3174300 1795200 2217800 25624000 31949000 32375000 4757200 3928000 4767400 14009 1427 13654 263844;263845;263846;263847;263848;263849;263850;263851;263852;263853;263854;263855;263856;263857;263858;263859;263860;263861;263862;263863;263864;263865;263866;263867;263868;263869;263870;263871;263872;263873;263874;263875;263876;263877;263878;263879;263880;263881;263882;263883;263884 162091;162092;162093;162094;162095;162096;162097;162098;162099;162100;162101;162102;162103;162104;162105;162106;162107 162100 16 LVMVISK Unmodified 788.483 0.48299651 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.534 23.611 2 0.0015294 8591 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 128.38 67.057 3003500000 38231000 32833000 27557000 4170900 4188300 4312900 302370000 306050000 237520000 38911000 36614000 43098000 241540000 206970000 210850000 10912000 8578300 7100300 350470000 386190000 384270000 41400000 41335000 37989000 14010 531 13655 263885;263886;263887;263888;263889;263890;263891;263892;263893;263894;263895;263896;263897;263898;263899;263900;263901;263902;263903;263904;263905;263906;263907;263908 162108;162109;162110;162111;162112;162113;162114;162115;162116;162117;162118;162119;162120;162121;162122;162123;162124;162125 162109 18 LVNADIEK Unmodified 900.49165 0.49164694 627 P0AB43 ycgL Protein YcgL yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 14.869 15.723 2 0.0033112 5336 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.195 70.671 505810000 54067000 61751000 47235000 2188100 2655500 2967700 38962000 35296000 31325000 0 0 0 44596000 32090000 34352000 0 0 0 43628000 36929000 37766000 0 0 0 14011 627 13656 263909;263910;263911;263912;263913;263914;263915;263916;263917;263918;263919;263920;263921;263922;263923;263924;263925 162126;162127;162128;162129;162130;162131 162129 6 LVNADSLVIDAR Unmodified 1284.7038 0.70376498 1988 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 51.153 49.846 2 8.6255E-05 18024 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 98.044 89.819 58175000 0 0 0 9476800 21373000 9587400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6983900 5618700 5135300 + 14012 1988 13657 263926;263927;263928;263929;263930;263931;263932 162132 162132 1 LVNAGDYK Unmodified 878.44978 0.44978213 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.53 14.188 2 0.00069413 4334 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 127.12 113.91 1449000000 148370000 140620000 118170000 2886600 2871300 2598700 142720000 132070000 124060000 4056200 4455500 4069000 87670000 69644000 66592000 1808300 0 0 125240000 121150000 134470000 5056900 5391300 5077700 14013 1503 13658 263933;263934;263935;263936;263937;263938;263939;263940;263941;263942;263943;263944;263945;263946;263947;263948;263949;263950;263951;263952;263953;263954;263955 162133;162134;162135;162136;162137;162138;162139;162140 162139 7 LVNAVQQDVHAILQLGEAQIEK Unmodified 2415.3122 0.31217302 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 2 3 1 3 1 3 4 3 3 3 3 3 4 4 4 3 3 3 3 3 3 53.232 52.076 2;3;4 2.0449E-75 21251 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 373.78 354.02 27820000000 60323000 57174000 62991000 0 0 3801600 64791000 43930000 46882000 2726100000 2676500000 2222000000 74096000 83602000 71656000 3560700000 4042700000 5529900000 90940000 94428000 112320000 2277100000 1919100000 1999300000 14014 1616 13659 263956;263957;263958;263959;263960;263961;263962;263963;263964;263965;263966;263967;263968;263969;263970;263971;263972;263973;263974;263975;263976;263977;263978;263979;263980;263981;263982;263983;263984;263985;263986;263987;263988;263989;263990;263991;263992;263993;263994;263995;263996;263997;263998;263999;264000;264001;264002;264003;264004;264005;264006;264007;264008;264009;264010;264011;264012;264013;264014;264015;264016;264017;264018;264019;264020 162141;162142;162143;162144;162145;162146;162147;162148;162149;162150;162151;162152;162153;162154;162155;162156;162157;162158;162159;162160;162161;162162;162163;162164;162165;162166;162167;162168;162169;162170;162171;162172;162173;162174;162175;162176;162177;162178 162155 37 LVNCVWK Unmodified 917.47931 0.47930812 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.646 22.1 2 0.0066314 8863 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 94.669 94.669 409860000 37016000 30995000 31069000 0 0 0 44486000 41590000 46851000 0 0 0 29279000 26574000 27237000 0 0 0 35944000 30143000 28675000 0 0 0 14015 880 13660 264021;264022;264023;264024;264025;264026;264027;264028;264029;264030;264031;264032 162179 162179 1 LVNERPATTLR Unmodified 1268.7201 0.72008375 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 13.25 14.105 2;3 1.1361E-07 4310 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 175.65 140.35 1335900000 260890000 265770000 207880000 1369800 2372200 1433800 72892000 94855000 101880000 2328000 0 0 51070000 55494000 46249000 0 0 0 64203000 63415000 43826000 0 0 0 14016 218 13661 264033;264034;264035;264036;264037;264038;264039;264040;264041;264042;264043;264044;264045;264046;264047;264048;264049;264050;264051;264052;264053;264054;264055;264056;264057;264058;264059;264060 162180;162181;162182;162183;162184;162185;162186;162187;162188;162189;162190 162185 11 LVNEVTEFAK Unmodified 1148.6077 0.60773933 9 CON__P02768-1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 28.546 26.829 2 0.0012791 10068 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 85.676 55.509 117320000 0 0 0 9316100 5835700 6715700 0 0 0 15803000 22724000 19187000 0 0 0 0 0 0 0 0 0 14461000 12798000 10485000 + 14017 9 13662 264061;264062;264063;264064;264065;264066;264067;264068;264069 162191;162192;162193;162194;162195 162191 5 LVNKVHEGR Unmodified 1050.5934 0.59342667 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.665 13.463 3 0.0716 4010 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 42.599 24.159 241070000 19340000 21682000 28363000 0 0 0 27860000 22586000 22190000 0 0 0 0 0 14198000 0 0 0 26177000 29303000 29375000 0 0 0 14018 65 13663 264070;264071;264072;264073;264074;264075;264076;264077;264078;264079 162196;162197;162198;162199;162200;162201 162199 0 LVNNAAATMIDIVSSVTR Unmodified 1873.9931 0.99314707 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1 54.98 53.605 2;3 1.7818E-13 19714 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 176.25 170.41 36830000 3984400 0 2487600 6938300 8129700 9038600 0 6251000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14019 152 13664 264080;264081;264082;264083;264084;264085;264086;264087;264088 162202;162203;162204 162202 3 LVNNHLDEMMPVIYTPTVGAACER Unmodified 2729.2975 0.29752729 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 1 1 2 2 2 1 3 3 3 2 3 3 1 1 44.978 43.458 2;3;4 2.2862E-40 21220 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 278.88 268.54 2169000000 129670000 102090000 124840000 1026300 0 1344500 154100000 134400000 141940000 1507700 0 0 228090000 216930000 190340000 0 0 0 228810000 263790000 246580000 1328000 0 2183300 14020 1283 13665 264089;264090;264091;264092;264093;264094;264095;264096;264097;264098;264099;264100;264101;264102;264103;264104;264105;264106;264107;264108;264109;264110;264111;264112;264113;264114;264115;264116;264117;264118;264119;264120;264121;264122;264123;264124 162205;162206;162207;162208;162209;162210;162211;162212;162213;162214;162215;162216;162217;162218;162219;162220 162211 16 LVNPEELK Unmodified 940.52295 0.52294707 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.288 21.511 2 0.0010836 8767 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 111.82 93.78 2484300000 200310000 193460000 186360000 8242300 8744700 0 219160000 189930000 191360000 0 0 0 221060000 195220000 203280000 0 0 0 199190000 197100000 218010000 21088000 15276000 16537000 14021 245 13666 264125;264126;264127;264128;264129;264130;264131;264132;264133;264134;264135;264136;264137;264138;264139;264140;264141;264142;264143;264144 162221;162222;162223;162224;162225;162226;162227;162228;162229;162230;162231;162232;162233;162234;162235;162236;162237;162238;162239 162225 19 LVNPEELKQDAIDAVEQHGIVFIDEIDKICK Unmodified 3577.8338 0.83379946 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.537 53.489 5 1.1894E-12 21397 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 119.26 113.66 210080000 0 0 0 11663000 8600400 11067000 0 0 0 27176000 24448000 18523000 0 0 0 16390000 27209000 24454000 0 0 0 9450500 16783000 14310000 14022 245 13667 264145;264146;264147;264148;264149;264150;264151;264152;264153;264154;264155;264156 162240;162241;162242 162241 3 LVNQEWK Unmodified 915.48142 0.48141661 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.075 16.87 2 0.00026773 6000 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 160.69 85.86 11177000000 3112600000 3113100000 2394000000 9255900 6328800 6311300 413190000 390840000 324060000 0 0 1421100 233980000 189150000 183560000 0 0 0 284330000 247910000 266800000 0 0 0 14023 1217 13668 264157;264158;264159;264160;264161;264162;264163;264164;264165;264166;264167;264168;264169;264170;264171;264172;264173 162243;162244;162245;162246;162247;162248;162249;162250;162251;162252;162253;162254;162255;162256;162257 162243 15 LVNSQFSQR Unmodified 1077.5567 0.55670682 1277 P25894 loiP Metalloprotease LoiP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.823 15.411 2 0.032251 4268 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 59.35 55.778 130200000 12946000 9491300 10506000 1396100 1086200 1501200 7664900 8881500 8736700 2352800 1935800 1653400 5516700 5343000 5305200 0 880880 0 14679000 12616000 12919000 1475600 1581100 1733900 14024 1277 13669 264174;264175;264176;264177;264178;264179;264180;264181;264182;264183;264184;264185;264186;264187;264188;264189;264190;264191;264192;264193;264194;264195 162258;162259 162259 2 LVNTNVDQAAAASGR Unmodified 1485.7536 0.75356872 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.039 18.421 2 1.7799E-45 6848 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 277.06 248.86 367480000 13076000 10784000 8573500 5086400 4526800 3906300 34052000 35629000 33549000 8216700 10506000 7288700 20432000 19233000 17719000 786180 1084300 1160900 36709000 38434000 38269000 5972700 6525400 5963500 14025 997 13670 264196;264197;264198;264199;264200;264201;264202;264203;264204;264205;264206;264207;264208;264209;264210;264211;264212;264213;264214;264215;264216;264217;264218;264219 162260;162261;162262;162263;162264;162265;162266;162267;162268;162269;162270;162271;162272;162273;162274;162275;162276;162277;162278;162279;162280 162270 21 LVNWDPK Unmodified 870.45995 0.45995289 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 2 2 2 2 22.784 22.291 1;2 0.012974 9304 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.244 72.682 1827400000 143740000 152660000 133290000 0 0 0 160780000 149460000 152400000 0 0 0 136650000 109580000 117070000 0 0 0 194400000 203270000 174130000 0 0 0 14026 158 13671 264220;264221;264222;264223;264224;264225;264226;264227;264228;264229;264230;264231;264232;264233;264234;264235;264236;264237;264238;264239;264240;264241;264242;264243;264244;264245;264246 162281;162282;162283;162284;162285;162286;162287;162288;162289;162290;162291;162292;162293 162290 12 LVPEGIEGR Unmodified 968.5291 0.52909508 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.142 20.508 2 9.5966E-05 7718 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 137.18 101.55 4534700000 418300000 387220000 321380000 553860 645640 414640 314940000 303610000 284350000 0 0 0 423470000 368190000 374530000 0 0 0 451730000 449250000 434390000 0 1699000 0 14027 788 13672 264247;264248;264249;264250;264251;264252;264253;264254;264255;264256;264257;264258;264259;264260;264261;264262 162294;162295;162296;162297;162298;162299;162300;162301;162302;162303;162304;162305 162303 12 LVPEHDPVHK Unmodified 1169.6193 0.61930707 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 11.392 12.022 2;3 0.00035853 2586 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 82.279 73.43 1937500000 53485000 46506000 46148000 47318000 46534000 51849000 159760000 176680000 167230000 85321000 48385000 76411000 122020000 109110000 110410000 25877000 12309000 14104000 134740000 121750000 126990000 56590000 45734000 52254000 14028 595 13673 264263;264264;264265;264266;264267;264268;264269;264270;264271;264272;264273;264274;264275;264276;264277;264278;264279;264280;264281;264282;264283;264284;264285;264286;264287;264288;264289;264290;264291;264292;264293;264294;264295;264296;264297;264298;264299;264300;264301;264302;264303;264304;264305;264306;264307;264308;264309 162306;162307;162308;162309;162310;162311;162312;162313;162314;162315;162316;162317;162318;162319;162320;162321;162322;162323;162324;162325 162308 20 LVPETWGAK Unmodified 999.53893 0.53893149 1701 P64636 yrfG GMP/IMP nucleotidase YrfG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.346 23.449 2 0.04299 10321 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 56.177 46.266 145360000 3732900 4670400 4576700 0 0 0 12993000 13803000 10853000 0 0 0 13397000 11568000 14513000 0 0 0 20665000 18406000 16183000 0 0 0 14029 1701 13674 264310;264311;264312;264313;264314;264315;264316;264317;264318;264319;264320;264321 162326 162326 1 LVPFEDLPDEEVGSR Unmodified 1700.8257 0.82573061 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 44.079 42.686 2 2.3674E-07 20502 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 131.43 125.46 309950000 115180000 102300000 90177000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2294300 0 0 0 0 0 14030 218 13675 264322;264323;264324;264325 162327;162328;162329 162329 3 LVPFLDGQVIK Unmodified 1227.7227 0.72270951 379 P0A7X6 rimM Ribosome maturation factor RimM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.628 45.193 2 0.0018164 21976 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.287 72.929 209990000 28331000 27050000 26367000 1102900 1157400 1040500 25948000 15203000 24731000 0 0 0 9367800 7567000 7927800 0 0 0 12759000 9284600 12156000 0 0 0 14031 379 13676 264326;264327;264328;264329;264330;264331;264332;264333;264334;264335;264336;264337;264338;264339;264340 162330;162331;162332;162333;162334;162335;162336;162337;162338;162339 162337 10 LVPHATMPHPVK Unmodified 1325.7278 0.72781167 142 P06992 rsmA Ribosomal RNA small subunit methyltransferase A yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 1 14.162 15.012 2;3 0.014217 4995 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 72.643 61.814 201560000 24769000 25606000 31246000 0 0 0 8041900 0 6411800 0 0 0 17387000 19793000 16595000 0 0 0 20132000 17096000 14480000 0 0 0 14032 142 13677 264341;264342;264343;264344;264345;264346;264347;264348;264349;264350;264351;264352;264353;264354;264355;264356;264357 162340;162341;162342 162341 3 LVPIIADEAR Unmodified 1095.6288 0.62880913 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 5 8 5 1 1 3 1 2 2 3 4 2 2 2 2 2 2 3 7 6 8 33.55 32.095 1;2;3 1.2432E-08 10478 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 190.26 165.44 49277000000 1223200000 1220900000 1189300000 4782200000 4534800000 4768600000 1822400000 1610400000 1730600000 651650000 632610000 629660000 960150000 977010000 875040000 219250000 180770000 162850000 1598400000 1512800000 1562800000 5365000000 5263600000 5803200000 14033 939 13678 264358;264359;264360;264361;264362;264363;264364;264365;264366;264367;264368;264369;264370;264371;264372;264373;264374;264375;264376;264377;264378;264379;264380;264381;264382;264383;264384;264385;264386;264387;264388;264389;264390;264391;264392;264393;264394;264395;264396;264397;264398;264399;264400;264401;264402;264403;264404;264405;264406;264407;264408;264409;264410;264411;264412;264413;264414;264415;264416;264417;264418;264419;264420;264421;264422;264423;264424;264425;264426;264427;264428;264429;264430;264431;264432;264433;264434;264435;264436 162343;162344;162345;162346;162347;162348;162349;162350;162351;162352;162353;162354;162355;162356;162357;162358;162359;162360;162361;162362;162363;162364;162365;162366;162367;162368;162369;162370;162371;162372;162373;162374;162375;162376;162377;162378;162379;162380;162381;162382;162383;162384;162385;162386;162387;162388;162389;162390;162391;162392;162393;162394;162395;162396;162397;162398;162399;162400;162401;162402;162403;162404;162405;162406;162407;162408;162409;162410;162411;162412;162413;162414;162415;162416;162417;162418;162419;162420;162421;162422;162423;162424;162425;162426;162427 162389 84 LVPLQGFELDSLR Unmodified 1485.8191 0.81912909 1853 P76346 mtfA Protein MtfA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.226 49.941 2 7.6835E-06 23355 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.43 133.89 230970000 0 28377000 27329000 1595900 1655100 1408100 20147000 19459000 16250000 1840800 0 0 19453000 17145000 16369000 0 0 0 18692000 19859000 21392000 0 0 0 14034 1853 13679 264437;264438;264439;264440;264441;264442;264443;264444;264445;264446;264447;264448;264449;264450;264451;264452 162428;162429;162430;162431;162432;162433;162434 162433 7 LVPYSLR Unmodified 846.49634 0.49633839 168 P07654 pstA Phosphate transport system permease protein PstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 26.579 24.981 2 0.0030249 9403 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 109.7 68.495 23782000 0 0 0 0 0 0 0 0 0 5252200 3751800 3732700 0 0 0 0 0 0 0 0 0 4143000 3986700 2915500 14035 168 13680 264453;264454;264455;264456;264457;264458 162435;162436;162437 162435 3 LVPYYTVK Unmodified 981.55352 0.55351892 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.285 25.114 2 0.0016084 11281 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.43 107.43 10508000000 628820000 531280000 584170000 4456900 3879500 3853000 1064900000 1037000000 1025900000 4180800 3860000 3179500 894200000 964340000 838640000 2620200 1930100 0 949160000 945410000 1012000000 3906300 0 0 14036 24 13681 264459;264460;264461;264462;264463;264464;264465;264466;264467;264468;264469;264470;264471;264472;264473;264474;264475;264476;264477;264478;264479;264480 162438;162439;162440;162441;162442;162443;162444;162445;162446;162447;162448;162449;162450;162451 162443 12 LVQAVFHNVSTTITEPK Unmodified 1883.0153 0.015262719 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 1 2 2 2 31.988 30.682 2;3 9.9765E-19 14381 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 202.13 198.59 449800000 20435000 18726000 19663000 0 0 0 44018000 38016000 38019000 0 0 0 35111000 31819000 35332000 858240 0 0 60704000 54358000 52742000 0 0 0 14037 194 13682 264481;264482;264483;264484;264485;264486;264487;264488;264489;264490;264491;264492;264493;264494;264495;264496;264497;264498;264499;264500;264501;264502 162452;162453;162454;162455;162456;162457;162458;162459;162460;162461;162462;162463 162460 12 LVQDAGIIR Unmodified 983.57638 0.57637963 108 P05100 tag DNA-3-methyladenine glycosylase 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.611 22.166 2 0.00036516 8925 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 112.17 66.453 127790000 0 10125000 10050000 0 0 0 17512000 12746000 13986000 0 0 0 11147000 9760000 9531700 3906700 0 4881400 0 12465000 11676000 0 0 0 14038 108 13683 264503;264504;264505;264506;264507;264508;264509;264510;264511;264512;264513;264514 162464;162465;162466;162467 162467 1 LVQEYLY Unmodified 926.47493 0.47493425 187 P08390 usg USG-1 protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 40.569 38.635 2 0.12066 19150 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 50.12 35.707 49257000 0 0 6145500 0 0 0 9316700 9877700 9549000 0 0 1328900 0 0 13039000 0 0 0 0 0 0 0 0 0 14039 187 13684 264515;264516;264517;264518;264519;264520 162468;162469 162468 2 LVQQDLTDTLATLDK Unmodified 1672.8883 0.88833087 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS 1 45.7 44.198 2 9.9988E-05 15681 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 95.401 78.769 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14040 1899 13685 264521 162470 162470 1 LVQQDLTDTLATLDKIDR Unmodified 2057.1004 0.10044891 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 47.951 46.708 3 5.6066E-10 16772 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 126.19 121.57 88959000 0 0 0 16834000 11390000 15004000 0 0 0 8132800 9380900 0 0 0 0 3141000 0 5937300 0 0 0 0 10218000 8921400 14041 1899 13686 264522;264523;264524;264525;264526;264527;264528;264529;264530 162471;162472;162473;162474;162475;162476;162477 162476 7 LVQQFADAGIR Unmodified 1216.6564 0.65642086 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 2 1 1 1 1 1 2 3 2 1 1 1 1 2 1 1 28.104 26.969 2;3 1.1323E-07 12514 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 172.23 142.07 3997400000 378090000 317860000 257800000 838810 0 0 258310000 264030000 236920000 13398000 14140000 13871000 379990000 379310000 393570000 29818000 19168000 21391000 340480000 341850000 334380000 0 0 2127100 14042 297 13687 264531;264532;264533;264534;264535;264536;264537;264538;264539;264540;264541;264542;264543;264544;264545;264546;264547;264548;264549;264550;264551;264552;264553;264554;264555;264556;264557;264558;264559 162478;162479;162480;162481;162482;162483;162484;162485;162486;162487;162488;162489;162490;162491 162483 12 LVQQFADAGIRK Unmodified 1344.7514 0.75138388 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 1 1 1 19.903 19.896 2;3 1.4662E-06 6559 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 115.71 107.79 73344000 0 0 0 2521100 1336000 1395400 0 0 0 9984300 11330000 9305700 0 0 0 17878000 7844600 9574800 0 0 0 2174300 0 0 14043 297 13688 264560;264561;264562;264563;264564;264565;264566;264567;264568;264569;264570;264571;264572;264573 162492;162493;162494;162495;162496;162497;162498;162499 162497 8 LVQQFTK Unmodified 862.49125 0.49125301 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.962 15.542 2 0.0014353 5124 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.05 85.248 7173500000 853880000 956750000 941920000 0 0 2785700 335620000 305860000 267300000 3512600 2947600 3772400 358150000 355010000 316580000 0 0 0 849280000 798860000 804630000 5435100 4826100 6370500 14044 392 13689 264574;264575;264576;264577;264578;264579;264580;264581;264582;264583;264584;264585;264586;264587;264588;264589;264590;264591;264592 162500;162501;162502;162503;162504;162505;162506;162507;162508;162509;162510;162511;162512;162513 162509 12 LVQQHPR Unmodified 876.49298 0.49298435 1039 P0C0L7 proP Proline/betaine transporter yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.0429 7.7161 2 0.0018969 1244 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.87 104.11 233170000 11552000 11099000 8901000 7231700 0 0 0 22090000 0 18556000 15908000 16402000 18885000 15010000 18972000 0 0 0 17382000 17764000 18332000 0 6630700 8457900 14045 1039 13690 264593;264594;264595;264596;264597;264598;264599;264600;264601;264602;264603;264604;264605;264606;264607;264608 162514;162515;162516;162517;162518;162519;162520;162521;162522;162523 162518 9 LVSAHSK Unmodified 740.41809 0.41808807 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 4.4714 5.2807 2 0.0092255 1001 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 88.029 59.5 46516000 1068100 1044100 797350 0 0 0 17343000 744710 15455000 0 0 0 0 0 0 0 0 0 0 10064000 0 0 0 0 14046 1774 13691 264609;264610;264611;264612;264613;264614;264615 162524 162524 1 LVSEALAER Unmodified 986.53966 0.53965977 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.268 19.651 2 1.059E-07 6232 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 151.04 93.572 1441700000 97750000 0 0 0 0 0 0 0 0 0 0 1380000 2087100 0 245990000 0 0 0 377880000 356340000 0 127220000 124750000 108340000 14047 1088 13692 264616;264617;264618;264619;264620;264621;264622;264623;264624;264625;264626 162525;162526;162527;162528;162529;162530;162531;162532 162525 5 LVSEALAEREVLLK Unmodified 1568.9138 0.91375776 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 34.015 31.826 2 6.9669E-06 12380 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 117.09 105.88 19788000 0 0 0 0 0 0 0 0 0 5251600 5777800 5368900 0 0 0 0 0 0 0 0 0 0 1513500 1876400 14048 1088 13693 264627;264628;264629;264630;264631 162533;162534;162535 162534 3 LVSEPGVGTIATGVAK Unmodified 1497.8403 0.84025847 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.755 29.373 2 5.949E-10 14009 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 169.23 145.24 1621700000 320160000 289220000 281980000 0 1187000 1438500 102130000 99369000 106690000 0 0 2871300 70136000 56058000 53340000 0 1040500 0 75668000 76899000 81367000 0 1425900 762820 14049 218 13694 264632;264633;264634;264635;264636;264637;264638;264639;264640;264641;264642;264643;264644;264645;264646;264647;264648;264649 162536;162537;162538;162539;162540;162541;162542;162543;162544;162545;162546;162547 162537 7 LVSEYNATQK Unmodified 1151.5823 0.58225287 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.636 14.16 2 3.6489E-05 3214 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 120.15 107.2 1428500000 103450000 103810000 87320000 0 0 0 89064000 106560000 102130000 50533000 45145000 42928000 77545000 78652000 80371000 19305000 11381000 12059000 139730000 109040000 103190000 23127000 21890000 21219000 14050 883 13695 264650;264651;264652;264653;264654;264655;264656;264657;264658;264659;264660;264661;264662;264663;264664;264665;264666;264667;264668;264669;264670;264671;264672 162548;162549;162550;162551;162552;162553;162554;162555;162556;162557;162558;162559;162560 162557 13 LVSFAVHWIK Unmodified 1198.6863 0.68626443 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 35.149 35.238 3 0.0027464 11867 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 53.751 53.751 214010000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80596000 61726000 71689000 0 0 0 0 0 0 14051 1004 13696 264673;264674;264675 162561;162562;162563 162562 3 LVSGRPGEEVK Unmodified 1169.6404 0.64043645 828 P0AE12 amn AMP nucleosidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 11.676 12.312 2;3 0.00029867 3265 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.03 85.17 519930000 79895000 87873000 94475000 0 0 0 37623000 33963000 32568000 912360 664450 0 25179000 22395000 31095000 1603800 344240 0 0 33189000 38150000 0 0 0 14052 828 13697 264676;264677;264678;264679;264680;264681;264682;264683;264684;264685;264686;264687;264688;264689;264690;264691;264692;264693 162564;162565;162566;162567;162568 162564 5 LVSHANSVK Unmodified 953.52943 0.52942943 1708 P66948 bepA Beta-barrel assembly-enhancing protease yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 10.102 10.91 2 0.0071981 2354 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 68.224 58.983 47623000 9946900 11954000 4969900 0 0 0 0 0 0 0 0 0 0 1073100 0 0 0 0 5951500 5524500 8203300 0 0 0 14053 1708 13698 264694;264695;264696;264697;264698;264699;264700 162569 162569 1 LVSHQDGK Unmodified 882.45593 0.45593014 1303 P27431 roxA 50S ribosomal protein L16 arginine hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 5.2699 6.1557 2 7.9978E-05 942 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 165.11 148.57 365500000 27968000 34134000 32540000 513730 743300 609100 32480000 31474000 29269000 0 0 0 29455000 28127000 26423000 0 0 0 30095000 32535000 29136000 0 0 0 14054 1303 13699 264701;264702;264703;264704;264705;264706;264707;264708;264709;264710;264711;264712;264713;264714;264715;264716;264717 162570;162571;162572;162573;162574;162575;162576;162577;162578;162579;162580 162578 11 LVSIDEKPNFR Unmodified 1316.7089 0.70885036 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 23.028 22.424 2;3 6.6999E-11 9878 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 201.07 191.29 2924100000 276130000 296030000 249940000 669650 0 0 264170000 242890000 269320000 0 0 0 227730000 187350000 195420000 0 0 0 211960000 252470000 250040000 0 0 0 14055 963 13700 264718;264719;264720;264721;264722;264723;264724;264725;264726;264727;264728;264729;264730;264731;264732;264733;264734;264735;264736;264737;264738;264739;264740;264741;264742 162581;162582;162583;162584;162585;162586;162587;162588;162589;162590;162591;162592;162593;162594;162595;162596;162597;162598;162599;162600;162601;162602 162584 22 LVSNEFVAMMDLQK Unmodified 1623.8 0.80004991 934 P0AFF2 nupC Nucleoside permease NupC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 49.838 48.403 2;3 4.1749E-11 23562 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 171.62 166.82 363040000 0 2431900 0 2974100 2596100 4100300 31468000 29029000 25023000 33611000 25616000 28335000 23630000 18669000 20836000 0 0 0 34643000 29648000 23020000 8078500 9135300 10198000 14056 934 13701 264743;264744;264745;264746;264747;264748;264749;264750;264751;264752;264753;264754;264755;264756;264757;264758;264759;264760;264761;264762;264763;264764;264765;264766;264767;264768;264769;264770;264771;264772;264773;264774 162603;162604;162605;162606;162607;162608;162609;162610;162611;162612;162613;162614;162615;162616 162611 14 LVSNIDER Unmodified 944.49271 0.49270958 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.434 15.031 2 0.00018486 4940 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.73 105.22 6803000000 679120000 641900000 668410000 11250000 11067000 12218000 344180000 384760000 320040000 17762000 13291000 14108000 582460000 517550000 507660000 0 6327500 7367800 691180000 682650000 679930000 3238700 2944000 3630300 14057 424 13702 264775;264776;264777;264778;264779;264780;264781;264782;264783;264784;264785;264786;264787;264788;264789;264790;264791;264792;264793;264794;264795;264796;264797;264798 162617;162618;162619;162620;162621;162622;162623;162624;162625;162626;162627;162628;162629;162630;162631;162632;162633 162620 15 LVSSAGTGHFYTTTK Unmodified 1568.7835 0.78347187 360 P0A7N9 rpmG 50S ribosomal protein L33 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 16.433 16.981 2;3 3.1835E-20 5955 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 213.63 208.32 8308000000 1168500000 1083500000 263040000 42418000 40638000 46681000 426170000 420290000 396650000 67076000 50841000 80900000 537340000 460540000 438020000 82034000 71013000 65820000 813900000 890540000 675540000 53574000 65762000 67178000 14058 360 13703 264799;264800;264801;264802;264803;264804;264805;264806;264807;264808;264809;264810;264811;264812;264813;264814;264815;264816;264817;264818;264819;264820;264821;264822;264823;264824;264825;264826;264827;264828;264829;264830;264831;264832;264833;264834;264835;264836;264837;264838;264839;264840;264841;264842;264843;264844;264845;264846 162634;162635;162636;162637;162638;162639;162640;162641;162642;162643;162644;162645;162646;162647;162648;162649;162650;162651;162652;162653;162654;162655;162656;162657;162658;162659;162660;162661;162662;162663;162664;162665;162666;162667;162668;162669;162670;162671;162672;162673;162674;162675;162676;162677;162678;162679;162680;162681 162671 48 LVSSEVK Unmodified 760.43307 0.43306943 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.57 12.347 2 0.017717 3110 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 79.454 44.348 865890000 59907000 54143000 48310000 0 0 0 78370000 73765000 76519000 2069700 0 0 70070000 63871000 56497000 0 0 0 94516000 91350000 96501000 0 0 0 14059 883 13704 264847;264848;264849;264850;264851;264852;264853;264854;264855;264856;264857;264858;264859 162682;162683;162684;162685;162686;162687;162688;162689;162690 162689 9 LVSTHNEASLSR Unmodified 1312.6735 0.67352749 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 12.398 12.814 2;3 6.876E-17 2909 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 212.28 198.07 927260000 0 0 0 42549000 37474000 45686000 0 0 0 62735000 49900000 54892000 0 0 0 15254000 14708000 11977000 330890000 0 0 86998000 86099000 88106000 14060 215 13705 264860;264861;264862;264863;264864;264865;264866;264867;264868;264869;264870;264871;264872;264873;264874;264875;264876;264877;264878;264879;264880;264881;264882;264883;264884;264885 162691;162692;162693;162694;162695;162696;162697;162698;162699;162700;162701;162702;162703;162704;162705;162706;162707;162708 162699 18 LVSVHINDEPWTAWK Unmodified 1793.9101 0.91006937 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 41.579 39.902 2;3 7.0638E-27 19505 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 237.53 215.86 2033700000 228790000 229660000 202310000 0 0 0 145330000 166590000 152700000 0 0 0 145830000 147690000 147120000 0 0 0 150470000 147020000 170220000 0 0 0 14061 94 13706 264886;264887;264888;264889;264890;264891;264892;264893;264894;264895;264896;264897;264898;264899;264900;264901;264902;264903;264904;264905;264906;264907;264908 162709;162710;162711;162712;162713;162714;162715;162716;162717;162718;162719;162720;162721;162722;162723;162724;162725;162726;162727;162728;162729 162715 21 LVSVHINDEPWTAWKEEEGALVISNLPER Unmodified 3330.6885 0.68845586 94 P04825 pepN Aminopeptidase N yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 50.629 49.176 3;4 1.1292E-53 24376 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 242.5 238.8 633890000 32845000 0 23260000 0 0 3131200 20297000 171790000 200940000 0 0 0 0 0 0 0 0 0 181630000 0 0 0 0 0 14062 94 13707 264909;264910;264911;264912;264913;264914;264915;264916;264917 162730;162731;162732;162733;162734;162735;162736;162737 162730 8 LVSVLPNGPDYHPTVR Unmodified 1762.9366 0.93661847 1920 P77596 yagF Uncharacterized protein YagF yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 30.934 29.795 3 1.0422E-06 13859 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.57 91.845 29217000 9643500 9099500 10474000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14063 1920 13708 264918;264919;264920 162738;162739 162739 2 LVSWYDNETGYSNK Unmodified 1674.7526 0.75256567 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 1 1 1 4 4 3 1 1 1 5 4 3 1 1 1 5 3 4 1 32.413 31.04 2;3 1.7647E-14 14449 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 232.88 221.02 34786000000 1972600000 1875100000 1704900000 12860000 13234000 10337000 4035300000 3900800000 4016300000 12687000 8793100 8446200 2768800000 2585200000 2521300000 5595100 3783000 3548500 3104300000 3230600000 2986400000 0 0 4651100 14064 504 13709 264921;264922;264923;264924;264925;264926;264927;264928;264929;264930;264931;264932;264933;264934;264935;264936;264937;264938;264939;264940;264941;264942;264943;264944;264945;264946;264947;264948;264949;264950;264951;264952;264953;264954;264955;264956;264957;264958;264959;264960;264961;264962;264963;264964;264965;264966;264967;264968;264969;264970;264971;264972;264973;264974;264975 162740;162741;162742;162743;162744;162745;162746;162747;162748;162749;162750;162751;162752;162753;162754;162755;162756;162757;162758;162759;162760;162761;162762;162763;162764;162765;162766;162767;162768;162769;162770;162771;162772;162773;162774;162775;162776;162777;162778;162779;162780;162781;162782;162783;162784;162785;162786;162787;162788;162789;162790;162791;162792;162793 162768 49 LVTAENFDENAVR Unmodified 1476.7209 0.72087161 840 P0AE85 cpxP Periplasmic protein CpxP yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.102 26.935 2 1.6638E-31 12277 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 262.61 215.41 176760000 17568000 11245000 12276000 0 0 0 13394000 8766400 12402000 0 0 0 14479000 10485000 13230000 0 0 0 20728000 19358000 22831000 0 0 0 14065 840 13710 264976;264977;264978;264979;264980;264981;264982;264983;264984;264985;264986;264987 162794;162795;162796;162797;162798;162799;162800;162801 162796 8 LVTDEAELAGMPESALAAAK Unmodified 1985.998 0.99795767 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 2 2 2 1 1 1 45.523 44.056 2;3 4.0663E-14 21320 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 167.89 149.08 578130000 64461000 63472000 54877000 0 0 0 49300000 50155000 79663000 0 0 0 34118000 23125000 27168000 0 0 0 43652000 44275000 43865000 0 0 0 14066 1298 13711 264988;264989;264990;264991;264992;264993;264994;264995;264996;264997;264998;264999;265000;265001;265002;265003;265004;265005;265006 162802;162803;162804;162805;162806;162807;162808;162809;162810;162811;162812;162813;162814;162815;162816;162817;162818;162819;162820 162814 19 LVTDELVIALVK Unmodified 1311.8014 0.80135376 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 53.524 52.221 2;3 1.1654E-08 25399 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 205.09 193.94 12941000000 1192100000 981010000 1050500000 9044900 6286300 7979700 1012000000 1041800000 1027300000 1952500 2210100 2498400 876080000 902110000 912500000 5780200 3644200 5554400 1373800000 1314700000 1204100000 2790600 2623100 2070400 14067 1733 13712 265007;265008;265009;265010;265011;265012;265013;265014;265015;265016;265017;265018;265019;265020;265021;265022;265023;265024;265025;265026;265027;265028;265029;265030;265031;265032;265033;265034;265035;265036;265037;265038;265039;265040;265041;265042;265043 162821;162822;162823;162824;162825;162826;162827;162828;162829;162830;162831;162832;162833;162834;162835;162836;162837;162838;162839;162840;162841;162842;162843;162844;162845;162846;162847;162848;162849;162850;162851;162852;162853;162854 162844 34 LVTGLQR Unmodified 785.47594 0.4759373 1906 P77444 sufS Cysteine desulfurase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.537 16.277 2 0.0021791 5690 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.87 60.362 226240000 20208000 20568000 21939000 2817900 1946400 3067800 26605000 29203000 26378000 0 0 0 12093000 10375000 8720200 0 0 0 11777000 13160000 12132000 1474600 2427300 1351000 14068 1906 13713 265044;265045;265046;265047;265048;265049;265050;265051;265052;265053;265054;265055;265056;265057;265058;265059;265060;265061 162855;162856;162857;162858;162859;162860 162855 6 LVTHLDVSR Unmodified 1038.5822 0.58219329 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.052 16.868 2 1.4737E-05 5553 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 160.26 156.28 321760000 21298000 29207000 33139000 0 0 0 29777000 35105000 35397000 0 0 0 22036000 15799000 20685000 0 0 0 29356000 23874000 26090000 0 0 0 14069 1778 13714 265062;265063;265064;265065;265066;265067;265068;265069;265070;265071;265072;265073 162861;162862;162863;162864;162865;162866;162867;162868;162869 162867 7 LVTIDNIQK Unmodified 1042.6023 0.60226003 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 24.209 23.344 2 0.00056384 10596 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.01 80.593 394870000 28130000 29080000 25816000 4739200 4737300 4692400 21136000 17846000 16320000 20801000 19390000 18426000 20422000 17449000 20079000 3673400 2482100 2921300 28448000 29376000 29208000 9368500 10698000 9628300 14070 78 13715 265074;265075;265076;265077;265078;265079;265080;265081;265082;265083;265084;265085;265086;265087;265088;265089;265090;265091;265092;265093;265094;265095;265096;265097;265098;265099;265100;265101;265102;265103;265104;265105;265106 162870;162871;162872;162873;162874;162875;162876;162877;162878;162879;162880;162881;162882;162883 162871 14 LVTLAER Unmodified 800.4756 0.47560295 1853 P76346 mtfA Protein MtfA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 17.917 18.455 2 0.0075927 6827 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 90.661 30.317 158100000 14140000 20024000 16009000 0 0 0 19998000 16205000 0 2340400 0 2921500 14396000 0 10490000 0 0 0 15419000 14871000 11285000 0 0 0 14071 1853 13716 265107;265108;265109;265110;265111;265112;265113;265114;265115;265116;265117;265118;265119 162884;162885;162886 162885 3 LVTLEVLSEPGASAIDR Unmodified 1768.9571 0.95707914 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.82 45.265 2 7.9922E-14 18178 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 198.49 187.58 104420000 8045600 5761500 7169200 1730000 2044700 1579200 7362900 9472200 7640400 4557400 4462000 5095800 7197900 7891400 5902400 0 0 0 8940400 9565100 0 0 0 0 14072 1475 13717 265120;265121;265122;265123;265124;265125;265126;265127;265128;265129;265130;265131;265132;265133;265134;265135;265136 162887;162888;162889;162890 162888 4 LVTPGIRPQGSEAGDQR Unmodified 1779.9228 0.92275932 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 17.259 17.941 2;3 2.1845E-09 6114 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 130.06 122.65 2158800000 242550000 227540000 290810000 0 0 0 129490000 121890000 125800000 0 0 0 156250000 158910000 164080000 0 0 0 200600000 177060000 163820000 0 0 0 14073 181 13718 265137;265138;265139;265140;265141;265142;265143;265144;265145;265146;265147;265148;265149;265150;265151;265152;265153;265154;265155;265156;265157;265158;265159;265160 162891;162892;162893;162894;162895;162896;162897;162898;162899;162900;162901;162902;162903;162904;162905;162906;162907;162908;162909;162910;162911 162908 21 LVTYPGNYDQYLLEK Unmodified 1814.9091 0.90906631 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.724 40.855 2 8.3712E-07 20318 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.07 137.33 252520000 17437000 12968000 15398000 0 0 0 17495000 18760000 17724000 1620900 1537400 1403600 19801000 18872000 19928000 0 0 0 31308000 30255000 28015000 0 0 0 14074 1564 13719 265161;265162;265163;265164;265165;265166;265167;265168;265169;265170;265171;265172;265173;265174;265175 162912;162913;162914;162915;162916;162917;162918;162919;162920;162921;162922;162923 162914 12 LVTYPGNYDQYLLEKEEALR Unmodified 2413.2165 0.2165413 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.53 39.836 3 0.01718 19519 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 50.226 48.649 159590000 13692000 8325900 7069100 0 0 0 13412000 13193000 14786000 0 0 0 13844000 0 15994000 0 0 0 21195000 20790000 17292000 0 0 0 14075 1564 13720 265176;265177;265178;265179;265180;265181;265182;265183;265184;265185;265186 162924;162925 162924 0 LVTYQTDANGQPVNQILVEAATDIAK Unmodified 2771.4341 0.43413865 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 54.217 52.775 2;3 7.1247E-51 25816 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 317 313.36 2321200000 326940000 304700000 298550000 0 0 0 69059000 74454000 25266000 0 0 0 132110000 127550000 123520000 0 0 0 275360000 268700000 294970000 0 0 0 14076 392 13721 265187;265188;265189;265190;265191;265192;265193;265194;265195;265196;265197;265198;265199;265200;265201;265202;265203;265204;265205;265206;265207;265208;265209 162926;162927;162928;162929;162930;162931;162932;162933;162934;162935;162936;162937;162938;162939;162940;162941;162942;162943;162944;162945 162939 20 LVVATDTAFVPFEFK Unmodified 1682.892 0.89195969 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 53.507 52.118 2;3 5.6504E-20 25449 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 204.17 180.32 4200500000 1452400000 1316800000 1429900000 0 0 0 0 0 0 0 0 0 0 0 1336900 0 0 0 0 0 0 0 0 0 14077 877 13722 265210;265211;265212;265213;265214;265215;265216 162946;162947;162948;162949;162950;162951 162950 6 LVVAVDQEGGR Unmodified 1141.6091 0.60913632 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.556 20.939 2 2.0609E-05 8514 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 135.71 109.61 458760000 40062000 28893000 28706000 0 0 286900 42432000 45288000 38431000 0 0 0 39850000 35620000 35864000 0 0 0 41231000 42053000 40047000 0 0 0 14078 1794 13723 265217;265218;265219;265220;265221;265222;265223;265224;265225;265226;265227;265228;265229 162952;162953;162954;162955;162956;162957;162958;162959;162960;162961;162962 162952 10 LVVDADNDIR Unmodified 1128.5775 0.57750184 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 22.892 22.314 2 0.0014606 9203 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 84.615 74.2 117360000 0 0 0 3025400 3117600 2785400 19387000 16040000 22310000 0 0 0 14953000 0 12635000 0 0 8390500 14718000 0 0 0 0 0 14079 1475 13724 265230;265231;265232;265233;265234;265235;265236;265237;265238;265239 162963;162964;162965;162966;162967;162968 162968 5 LVVDPITR Unmodified 911.54402 0.54401687 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 26.652 25.275 2 0.0062957 9335 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 85.212 61.239 196450000 1847800 0 0 0 0 0 58706000 48023000 63601000 3887800 3916000 3942000 5599300 4046100 2885600 0 0 0 0 0 0 0 0 0 14080 722 13725 265240;265241;265242;265243;265244;265245;265246;265247;265248;265249 162969;162970;162971 162970 3 LVVDQEDADGR Unmodified 1215.5731 0.57314474 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.43 17.196 2 4.5638E-14 6047 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 203.35 191.14 2502900000 209070000 199610000 179950000 423920 0 0 256960000 269980000 254700000 0 0 0 174080000 152020000 141440000 0 0 0 228260000 219360000 217060000 0 0 0 14081 1505 13726 265250;265251;265252;265253;265254;265255;265256;265257;265258;265259;265260;265261;265262 162972;162973;162974;162975;162976;162977;162978;162979;162980;162981 162974 10 LVVGGFER Unmodified 875.4865 0.48650199 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.166 24.116 2 0.00040535 10557 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.98 91.672 8972800000 625270000 572590000 589000000 0 0 0 1073500000 1088000000 917120000 0 3965000 0 616020000 688050000 550270000 0 0 0 694860000 770480000 767590000 0 16125000 0 14082 448;449 13727 265263;265264;265265;265266;265267;265268;265269;265270;265271;265272;265273;265274;265275;265276 162982;162983;162984;162985;162986;162987;162988;162989;162990;162991;162992;162993 162989 12 LVVGLEIGTAK Unmodified 1098.6649 0.66486028 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 1 1 1 2 1 2 1 1 1 1 1 2 2 1 36.064 34.496 2 0.0020655 16866 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 74.165 53.54 78050000 3096300 0 4303700 2856800 2974500 2792800 6922600 3895500 5634900 2343200 4751900 5069800 4258500 4442500 2797600 1001300 709220 765910 3906300 7613400 6050700 1862500 0 0 14083 656 13728 265277;265278;265279;265280;265281;265282;265283;265284;265285;265286;265287;265288;265289;265290;265291;265292;265293;265294;265295;265296;265297;265298;265299;265300;265301;265302 162994;162995;162996;162997;162998;162999;163000;163001;163002;163003 162997 6 LVVLFGNNPGETR Unmodified 1414.7569 0.75686319 1152 P18775 dmsA Dimethyl sulfoxide reductase DmsA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 37.773 35.895 2 5.5169E-07 14138 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 145.34 142.34 34660000 0 0 0 0 377710 0 0 0 0 0 3043300 5097100 7997900 6540900 6299500 0 0 0 0 0 0 5303500 0 0 14084 1152 13729 265303;265304;265305;265306;265307;265308;265309 163004;163005 163005 2 LVVNEHGR Unmodified 922.49846 0.49846366 742 P0ACR4 yeiE Uncharacterized HTH-type transcriptional regulator YeiE yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.91 11.702 2 0.0097902 2921 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.469 75.152 71445000 8623400 8645400 7001300 0 0 0 8451800 6260800 10138000 0 0 0 4955400 0 0 0 0 0 5315000 6539700 5513500 0 0 0 14085 742 13730 265310;265311;265312;265313;265314;265315;265316;265317;265318;265319 163006 163006 1 LVVNSATR Unmodified 858.49232 0.49231565 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 1 15.204 15.793 2 0.000154 3687 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 155.51 105.39 3673200000 197270000 194600000 201090000 37355000 0 24022000 376750000 371910000 311290000 853620 654470 1048800 294930000 292300000 309000000 0 0 1181800 334890000 333300000 330560000 20127000 20230000 19814000 14086 1294 13731 265320;265321;265322;265323;265324;265325;265326;265327;265328;265329;265330;265331;265332;265333;265334;265335;265336;265337;265338;265339;265340;265341;265342;265343;265344;265345;265346 163007;163008;163009;163010;163011;163012;163013;163014;163015;163016;163017;163018;163019;163020;163021;163022;163023;163024 163024 13 LVVQIDNAK Unmodified 998.57605 0.57604528 18 CON__Q14525;CON__Q9UE12;CON__Q15323;CON__Q497I4;CON__Q6NTB9;CON__O76009;CON__A2A5Y0;CON__REFSEQ:XP_986630;CON__Q9D646 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 2 1 2 1 1 1 2 1 1 2 1 1 1 1 33.421 31.797 2 0.0010429 15086 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.662 26.682 2071200000 172170000 182920000 205070000 2587000 2366900 2031600 200560000 159800000 168980000 2929700 2818000 3369800 160590000 130940000 110950000 0 0 0 221320000 167130000 170210000 2309800 2126700 0 + 14087 18 13732 265347;265348;265349;265350;265351;265352;265353;265354;265355;265356;265357;265358;265359;265360;265361;265362;265363;265364;265365;265366;265367;265368;265369;265370;265371 163025;163026;163027;163028;163029;163030;163031;163032;163033;163034;163035;163036;163037;163038;163039;163040 163036 16 LVVSAEVPLYEIYQGDR Unmodified 1950.0098 0.0098429899 1698 P64612 zapE Cell division protein ZapE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 51.109 49.865 2 1.2912E-08 24292 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.13 132.82 57682000 6686900 5350800 6978100 2032900 1995300 2091000 0 0 0 2307100 0 0 2943200 3085900 2881200 0 0 0 6321700 8867200 6140400 0 0 0 14088 1698 13733 265372;265373;265374;265375;265376;265377;265378;265379;265380;265381;265382;265383;265384 163041 163041 1 LVVTGFISR Unmodified 990.58622 0.58621603 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.329 33.677 2 9.4327E-07 16387 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 179.21 170.94 170510000 16269000 9670100 12604000 0 556100 509920 16790000 15882000 13770000 1505000 1374500 0 9360400 10837000 9393500 0 0 0 18066000 16077000 16897000 0 0 947550 14089 35 13734 265385;265386;265387;265388;265389;265390;265391;265392;265393;265394;265395;265396;265397;265398;265399;265400;265401 163042;163043;163044;163045;163046;163047;163048 163044 7 LVVVCTHADSHFEYAK Unmodified 1874.8985 0.8985184 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 2 2 2 2 1 2 1 1 21.996 21.967 3;4 1.3603E-06 9325 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 97.45 95.627 302580000 14752000 13162000 11664000 0 0 0 62755000 50244000 45979000 0 0 0 24091000 17231000 13276000 0 0 0 21308000 12781000 15332000 0 0 0 14090 1588 13735 265402;265403;265404;265405;265406;265407;265408;265409;265410;265411;265412;265413;265414;265415;265416;265417;265418;265419 163049;163050;163051;163052;163053;163054;163055;163056;163057;163058 163051 10 LVVVPNTHYWDNAK Unmodified 1654.8467 0.84674083 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 31.056 29.682 2 2.3494E-05 13937 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.93 87.238 69945000 5679700 4702900 5264200 0 0 0 8754300 6362200 7416000 0 0 0 0 3555300 3708400 0 0 0 8329300 7064600 9108700 0 0 0 14091 1900 13736 265420;265421;265422;265423;265424;265425;265426;265427;265428;265429;265430 163059 163059 1 LVVVSNR Unmodified 785.47594 0.4759373 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.26 14.974 2 0.0021148 4776 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 118.01 61.985 578930000 122030000 100600000 87965000 0 1980700 0 52482000 60217000 56271000 2103200 1700700 1910400 13422000 12002000 11171000 0 0 0 15863000 19959000 19248000 0 0 0 14092 1376 13737 265431;265432;265433;265434;265435;265436;265437;265438;265439;265440;265441;265442;265443;265444;265445;265446 163060;163061;163062;163063;163064 163061 3 LVYDMYSTFGFEK Unmodified 1598.7327 0.73268185 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.602 48.22 2 3.2098E-05 22732 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 103.35 98.701 502660000 34661000 30430000 30019000 1844100 1777300 1876200 54892000 49567000 45426000 0 0 0 39110000 38814000 41199000 0 0 0 45748000 45888000 41411000 0 0 0 14093 445 13738 265447;265448;265449;265450;265451;265452;265453;265454;265455;265456;265457;265458;265459;265460;265461 163065;163066;163067;163068;163069;163070;163071;163072;163073;163074;163075;163076 163074 12 LVYEHTAK Unmodified 959.50763 0.50763136 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.913 11.788 2 0.0037045 2885 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 87.754 39.839 1446100000 135740000 122880000 127020000 868850 1192000 929820 146600000 148210000 0 0 0 0 116320000 114470000 105290000 0 0 0 159170000 139560000 127850000 0 0 0 14094 170 13739 265462;265463;265464;265465;265466;265467;265468;265469;265470;265471;265472;265473;265474;265475;265476 163077;163078;163079;163080;163081;163082;163083;163084;163085 163079 9 LVYSTETGR Unmodified 1024.5189 0.51892433 182 P08245 yciH Uncharacterized protein YciH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 14.56 15.341 2 0.00010549 4836 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 134.81 124.9 204690000 24332000 21997000 18909000 0 0 0 0 18855000 12537000 0 0 0 15677000 14103000 10625000 0 0 0 21476000 24203000 21976000 0 0 0 14095 182 13740 265477;265478;265479;265480;265481;265482;265483;265484;265485;265486;265487 163086;163087;163088;163089;163090;163091;163092;163093 163091 8 LVYTLSTFNADMLLEK Unmodified 1856.9594 0.95938732 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 2 2 2 2 2 2 1 2 2 2 53.684 52.306 2;3 0.012316 24531 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 53.828 46.598 442670000 14813000 12333000 13345000 0 0 0 62636000 40410000 47792000 0 0 0 43828000 41671000 43087000 0 0 8895500 38977000 40212000 34674000 0 0 0 14096 1468 13741 265488;265489;265490;265491;265492;265493;265494;265495;265496;265497;265498;265499;265500;265501;265502;265503;265504;265505;265506;265507;265508;265509;265510;265511 163094;163095;163096;163097 163097 0 LWANARQFREQMSAAGFTLAGADHAIIPVMLGDAVVAQK Unmodified 4153.1354 0.13535841 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 53.377 51.864 4 0.16707 25658 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 2.5481 1.1923 235030000 8523400 10462000 8337300 0 0 0 71300000 67411000 68995000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14097 635 13742 265512;265513;265514;265515;265516;265517 163098 163098 1 LWCVFGCGGDR Unmodified 1325.5645 0.56451109 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.194 38.529 2 0.0023776 18555 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.451 68.771 79862000 8924100 9445900 7512100 0 0 0 6241000 6351300 7139300 0 0 0 4815300 3986200 4344300 0 0 0 7361400 6485900 7255600 0 0 0 14098 1192 13743 265518;265519;265520;265521;265522;265523;265524;265525;265526;265527;265528;265529 163099;163100;163101 163101 3 LWDAVTGQHDK Unmodified 1268.6149 0.61494998 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 1 1 2 1 19.224 19.725 2;3 1.116E-05 7504 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.9 103.79 147200000 41159000 38209000 32619000 0 1320800 987500 9542100 7558900 13473000 0 0 0 0 0 0 0 0 0 0 2331600 0 0 0 0 14099 783 13744 265530;265531;265532;265533;265534;265535;265536;265537;265538;265539;265540;265541;265542 163102;163103;163104;163105 163103 3 LWDAVTGQHDKDDQAK Unmodified 1825.8595 0.85949036 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 3 3 3 2 2 2 16.397 16.985 2;3;4 2.3031E-30 6064 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 273.72 252.93 9812100000 1887400000 1903100000 1838100000 348730000 309110000 322710000 608210000 706160000 665900000 57462000 72864000 148740000 127990000 115450000 120110000 11228000 11015000 12887000 193580000 141840000 149910000 17491000 19310000 22765000 14100 783 13745 265543;265544;265545;265546;265547;265548;265549;265550;265551;265552;265553;265554;265555;265556;265557;265558;265559;265560;265561;265562;265563;265564;265565;265566;265567;265568;265569;265570;265571;265572;265573;265574;265575;265576;265577;265578;265579;265580;265581;265582;265583;265584;265585;265586;265587;265588;265589;265590;265591;265592;265593;265594;265595;265596;265597;265598;265599;265600;265601;265602;265603;265604;265605;265606;265607;265608 163106;163107;163108;163109;163110;163111;163112;163113;163114;163115;163116;163117;163118;163119;163120;163121;163122;163123;163124;163125;163126;163127;163128;163129;163130;163131;163132;163133;163134;163135;163136;163137;163138;163139;163140;163141;163142;163143;163144;163145;163146;163147;163148;163149;163150;163151;163152;163153;163154;163155;163156;163157;163158;163159;163160;163161;163162;163163;163164;163165;163166;163167;163168;163169;163170 163124 65 LWDAVTGQHDKDDQAKK Unmodified 1953.9545 0.95445338 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 4 2 4 4 4 4 3 2 2 4 4 4 1 1 1 2 2 1 2 13.368 13.988 2;3;4;5 1.9261E-13 4365 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 206.2 200.92 826310000 103640000 26932000 99016000 110240000 96401000 126370000 42722000 19384000 20460000 57519000 46189000 43814000 2643800 0 4493700 2280100 6412600 5219900 0 4214200 8358700 0 0 0 14101 783 13746 265609;265610;265611;265612;265613;265614;265615;265616;265617;265618;265619;265620;265621;265622;265623;265624;265625;265626;265627;265628;265629;265630;265631;265632;265633;265634;265635;265636;265637;265638;265639;265640;265641;265642;265643;265644;265645;265646;265647;265648;265649;265650;265651;265652;265653;265654;265655;265656;265657;265658;265659 163171;163172;163173;163174;163175;163176;163177;163178;163179;163180;163181;163182;163183;163184;163185;163186;163187;163188;163189;163190;163191;163192 163188 22 LWDKETLEK Unmodified 1160.6077 0.60773933 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 18.38 18.882 2;3 1.7845E-07 7018 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.98 155.85 1209900000 282720000 238920000 214600000 6603500 7434700 7771500 58884000 63323000 48685000 2808600 2090200 1970500 35096000 40872000 37162000 0 0 1222000 51799000 52376000 55578000 0 0 0 14102 334 13747 265660;265661;265662;265663;265664;265665;265666;265667;265668;265669;265670;265671;265672;265673;265674;265675;265676;265677;265678;265679;265680;265681;265682;265683;265684;265685;265686;265687;265688;265689;265690;265691;265692;265693;265694 163193;163194;163195;163196;163197;163198;163199;163200;163201;163202;163203;163204;163205;163206;163207;163208 163205 16 LWDQQGK Unmodified 873.43447 0.43446642 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.309 14.048 2 0.0077747 4256 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.903 0 1049100000 278900000 281730000 267040000 30496000 33998000 37420000 7159300 5807000 6181200 4596800 3104300 2949200 6290900 5359600 4603500 0 0 0 8188200 6448800 6301200 20967000 16535000 14969000 14103 1919 13748 265695;265696;265697;265698;265699;265700;265701;265702;265703;265704;265705;265706;265707;265708;265709;265710;265711;265712;265713;265714;265715;265716;265717;265718;265719;265720;265721 163209;163210;163211;163212;163213 163209 5 LWEQGVEGIEK Unmodified 1286.6507 0.65066678 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.704 29.086 2 2.6058E-07 12998 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 161.63 151.67 1424800000 0 153380000 117710000 3440100 3373400 3164000 119490000 119590000 104190000 12162000 14269000 11604000 101830000 106970000 103500000 0 0 0 142540000 147540000 145990000 4482300 4712200 4804500 14104 1144 13749 265722;265723;265724;265725;265726;265727;265728;265729;265730;265731;265732;265733;265734;265735;265736;265737;265738;265739;265740;265741 163214;163215;163216;163217;163218;163219;163220;163221;163222;163223;163224;163225;163226;163227;163228 163228 15 LWFSDVVAR Unmodified 1091.5764 0.57637963 1923 P77649 ydiU UPF0061 protein YdiU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 45.015 43.509 2 0.0008931 21146 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.523 85.256 84919000 8216400 9146100 11013000 0 0 0 4113400 4765900 5378600 0 0 0 5849200 4107900 3995900 0 0 0 11000000 9189100 7604600 539270 0 0 14105 1923 13750 265742;265743;265744;265745;265746;265747;265748;265749;265750;265751;265752;265753;265754 163229;163230;163231;163232;163233;163234;163235;163236 163233 8 LWGAQTQR Unmodified 958.49846 0.49846366 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 16.451 17.203 2 0.00094964 6089 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 116.3 99.335 657190000 98936000 94131000 107540000 0 0 0 49969000 39810000 44329000 0 0 0 44871000 34278000 0 0 0 0 47346000 49358000 46626000 0 0 0 14106 106 13751 265755;265756;265757;265758;265759;265760;265761;265762;265763;265764;265765 163237;163238;163239;163240 163237 4 LWHAVAEATGLK Unmodified 1294.7034 0.70337105 1701 P64636 yrfG GMP/IMP nucleotidase YrfG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 1 2 2 2 26.071 24.93 2;3 1.0927E-05 11218 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.06 135.06 189420000 0 0 5232300 0 0 0 8523400 21086000 21543000 0 0 0 26200000 8230200 6655500 0 0 439050 11532000 42665000 37314000 0 0 0 14107 1701 13752 265766;265767;265768;265769;265770;265771;265772;265773;265774;265775;265776;265777;265778;265779;265780;265781;265782;265783 163241;163242;163243;163244;163245 163243 5 LWICPSWR Unmodified 1116.5539 0.55387005 457 P0A8T1 prmA Ribosomal protein L11 methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 42.465 40.762 2 0.0001056 20435 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 160.03 154.25 518460000 28120000 27746000 23338000 566600 0 0 46099000 45596000 42357000 0 0 0 41149000 37654000 42289000 0 0 0 65971000 59497000 58081000 0 0 0 14108 457 13753 265784;265785;265786;265787;265788;265789;265790;265791;265792;265793;265794;265795;265796;265797 163246;163247;163248;163249;163250;163251;163252;163253;163254 163246 9 LWLALAGGK Unmodified 927.55419 0.55418762 1698 P64612 zapE Cell division protein ZapE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.592 38.676 2 0.0033817 18752 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.784 66.847 62952000 0 0 0 1713300 1546400 1325800 6092800 4908000 4972700 3853800 2057400 2709100 3732400 3025800 2769100 0 0 0 6472900 7094800 6929300 0 1731900 2016900 14109 1698 13754 265798;265799;265800;265801;265802;265803;265804;265805;265806;265807;265808;265809;265810;265811;265812;265813;265814 163255;163256;163257;163258;163259 163258 5 LWLITDAATHVQLK Unmodified 1607.9035 0.90352742 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.724 42.327 3 3.1791E-06 16960 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 110.29 103.56 480990000 24047000 20276000 0 0 0 0 71362000 63330000 64022000 15182000 9791600 9566700 29170000 0 30964000 9785200 9918200 12856000 34190000 37001000 39527000 0 0 0 14110 1916 13755 265815;265816;265817;265818;265819;265820;265821;265822;265823;265824;265825;265826;265827;265828;265829;265830 163260;163261;163262;163263;163264;163265;163266;163267;163268;163269;163270;163271;163272;163273;163274 163263 15 LWPELAER Unmodified 1012.5342 0.53418046 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 34.716 33.349 2 0.016212 15185 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 68.915 53.476 261790000 38542000 37552000 35265000 0 0 0 0 36239000 0 0 0 0 14809000 14228000 13754000 0 0 0 24401000 22536000 24468000 0 0 0 14111 1282 13756 265831;265832;265833;265834;265835;265836;265837;265838;265839;265840 163275;163276;163277;163278;163279;163280;163281;163282 163282 8 LWQAGQR Unmodified 857.45079 0.45078518 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.601 15.171 2 0.00547 4256 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 99.511 90.27 180150000 0 0 0 2058400 1841800 2392800 0 0 0 9122900 8805500 8438000 5121900 3548000 5992200 2397900 0 0 22758000 24611000 21478000 19085000 21882000 20613000 14112 1435 13757 265841;265842;265843;265844;265845;265846;265847;265848;265849;265850;265851;265852;265853;265854;265855;265856 163283;163284;163285;163286;163287;163288 163283 6 LWQASGLGYTDLITR Unmodified 1692.8835 0.88352026 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 2 2 2 2 2 2 48.214 46.912 2;3 5.6117E-20 22783 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 204.32 195.81 837750000 60891000 64571000 56050000 0 0 0 71275000 68241000 65336000 0 0 0 78744000 74903000 61212000 0 0 0 76786000 77729000 82014000 0 0 0 14113 253 13758 265857;265858;265859;265860;265861;265862;265863;265864;265865;265866;265867;265868;265869;265870;265871;265872;265873;265874;265875;265876;265877 163289;163290;163291;163292;163293;163294;163295;163296;163297;163298;163299;163300;163301;163302;163303 163293 15 LWQATHAHPFDLTK Unmodified 1663.8471 0.84707518 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 1 3 3 3 3 3 3 3 3 3 2 2 2 3 4 3 2 2 3 25.577 24.455 2;3;4 1.3795E-26 11142 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 269.93 256.12 3497800000 112900000 96706000 80230000 1136700 2748600 2349700 367090000 359150000 351130000 94168000 104500000 116080000 231400000 213030000 185520000 37446000 40967000 43412000 317830000 346650000 312690000 32944000 20861000 26833000 14114 30 13759 265878;265879;265880;265881;265882;265883;265884;265885;265886;265887;265888;265889;265890;265891;265892;265893;265894;265895;265896;265897;265898;265899;265900;265901;265902;265903;265904;265905;265906;265907;265908;265909;265910;265911;265912;265913;265914;265915;265916;265917;265918;265919;265920;265921;265922;265923;265924;265925;265926;265927;265928;265929;265930;265931;265932;265933;265934;265935;265936;265937;265938;265939;265940 163304;163305;163306;163307;163308;163309;163310;163311;163312;163313;163314;163315;163316;163317;163318;163319;163320;163321;163322;163323;163324;163325;163326;163327;163328;163329;163330;163331;163332;163333;163334;163335;163336;163337;163338;163339;163340;163341;163342;163343;163344;163345;163346;163347;163348;163349;163350;163351;163352;163353;163354;163355;163356 163326 53 LWQDYPTSVLASDR Unmodified 1649.8049 0.80493559 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 41.971 40.107 2 1.3945E-05 19477 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 103.43 13.628 228720000 97724000 0 0 1678100 1493600 1350100 0 0 0 2388600 2757900 1487500 22416000 0 19314000 0 0 0 24864000 24466000 26778000 0 0 1996800 14115 1171 13760 265941;265942;265943;265944;265945;265946;265947;265948;265949;265950;265951;265952;265953 163357 163357 1 LWQQAGLPPGVLNLVQGGR Unmodified 2002.1112 0.11122879 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 53.261 51.862 2;3 7.0372E-10 25346 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 117.13 113.64 215870000 71985000 65239000 76812000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1832500 0 0 0 14116 1835 13761 265954;265955;265956;265957;265958;265959;265960 163358;163359;163360;163361;163362;163363 163363 6 LWSAQASSEINLGK Unmodified 1502.7729 0.77290718 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.055 32.603 2 1.1888E-05 15859 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 105.46 90.195 72956000 5782200 4942400 5151400 0 0 0 13846000 15479000 11948000 0 0 0 5161400 5169500 5475900 0 0 0 0 0 0 0 0 0 14117 709 13762 265961;265962;265963;265964;265965;265966;265967;265968;265969 163364;163365 163364 2 LWTFESDGK Unmodified 1081.508 0.50802529 1772 P75791 ybiU Uncharacterized protein YbiU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 33.027 31.724 2 0.0039101 14950 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.906 69.818 88160000 11386000 11579000 12087000 0 0 0 0 0 0 0 0 0 7021000 6150000 5883800 0 0 0 11441000 10420000 12192000 0 0 0 14118 1772 13763 265970;265971;265972;265973;265974;265975;265976;265977;265978 163366 163366 1 LWTTLVR Unmodified 887.52289 0.52288749 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1 1 1 1 1 1 1 33.14 31.694 2 0.0011398 15050 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 135.5 108.38 309910000 47540000 39966000 31091000 0 0 0 42302000 40095000 37646000 0 0 0 11014000 8257200 8186900 0 0 0 14025000 14760000 15026000 0 0 0 14119 1557 13764 265979;265980;265981;265982;265983;265984;265985;265986;265987;265988;265989;265990;265991;265992;265993 163367;163368;163369;163370;163371;163372;163373;163374;163375;163376;163377;163378 163371 12 LWVAPPTR Unmodified 938.53379 0.53378653 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.726 26.484 2 0.00057661 12410 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.09 119.6 6500400000 935040000 805090000 838710000 6913400 5372100 6136600 386450000 377520000 403550000 3050300 3140100 4305900 305980000 316130000 279940000 0 995000 1559400 636530000 579900000 589630000 5079400 4337800 5044100 14120 1444 13765 265994;265995;265996;265997;265998;265999;266000;266001;266002;266003;266004;266005;266006;266007;266008;266009;266010;266011;266012;266013;266014;266015;266016 163379;163380;163381;163382;163383;163384;163385;163386;163387;163388;163389;163390 163380 8 LWVASTDYTGEMAVSDEILK Unmodified 2227.0719 0.071850899 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 52.274 50.995 2 0.15815 24929 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 38.337 35.628 59485000 7185800 5289500 0 0 0 0 6986800 5546700 4746300 0 0 0 0 0 9182000 0 0 0 7233300 6972000 6343000 0 0 0 14121 58 13766 266017;266018;266019;266020;266021;266022;266023;266024;266025 163391 163391 0 LWVASTDYTGEMAVSDEILKR Unmodified 2383.173 0.17296193 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 46.939 45.532 3 3.3674E-15 22132 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 139.17 136.12 242030000 23993000 0 19180000 0 0 0 26233000 27340000 21316000 0 0 0 17159000 17127000 15566000 0 0 0 26129000 21646000 26340000 0 0 0 14122 58 13767 266026;266027;266028;266029;266030;266031;266032;266033;266034;266035;266036;266037 163392;163393;163394;163395;163396;163397;163398;163399;163400;163401;163402 163395 10 LWVNPDCGLK Unmodified 1200.5961 0.59612879 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.506 31.167 2 0.00031388 14194 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 111.17 111.17 1701000000 57141000 59717000 58399000 0 0 0 464010000 432340000 416890000 0 0 0 26396000 24828000 24512000 0 0 0 46833000 49413000 40512000 0 0 0 14123 1265 13768 266038;266039;266040;266041;266042;266043;266044;266045;266046;266047;266048;266049 163403;163404;163405;163406;163407;163408;163409;163410;163411;163412 163410 10 LWYIGPMFR Unmodified 1181.6056 0.60557126 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.221 50.974 2 3.0286E-05 24813 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.09 147.99 537290000 26104000 30644000 31697000 0 0 0 39663000 37094000 40975000 0 0 0 50549000 50217000 46524000 0 0 0 64529000 60714000 58583000 0 0 0 14124 1634 13769 266050;266051;266052;266053;266054;266055;266056;266057;266058;266059;266060;266061 163413;163414;163415;163416;163417;163418;163419;163420;163421;163422;163423;163424 163417 12 LYAADSR Unmodified 794.39227 0.39226725 217;887 P09551;P0AEU0 argT;hisJ Lysine/arginine/ornithine-binding periplasmic protein;Histidine-binding periplasmic protein no no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 2 2 2 11.644 12.474 1;2 0.00066643 3316 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 148.07 96.501 1619900000 430820000 382830000 419730000 568400 489840 502320 48337000 34360000 34459000 0 0 0 33737000 32266000 33314000 0 0 1276100 56595000 58857000 51805000 0 0 0 14125 217;887 13770 266062;266063;266064;266065;266066;266067;266068;266069;266070;266071;266072;266073;266074;266075;266076;266077;266078;266079;266080;266081;266082;266083;266084;266085;266086;266087;266088;266089 163425;163426;163427;163428;163429;163430;163431;163432;163433;163434;163435;163436 163427 11 LYAASSSGVPVNLLVR Unmodified 1644.9199 0.91990577 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.623 42.108 2 0.00048622 20415 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 67.153 66.67 108650000 19549000 17784000 17860000 0 0 0 11479000 9675100 8979700 0 0 0 3521700 3906300 2460700 0 0 0 3921100 4378100 5130400 0 0 0 14126 326 13771 266090;266091;266092;266093;266094;266095;266096;266097;266098;266099;266100;266101 163437 163437 0 LYAIHGTNANFGIGLR Unmodified 1715.9107 0.91073807 617;1511 P0AAX8;P39176 ybiS;erfK Probable L,D-transpeptidase YbiS;Probable L,D-transpeptidase ErfK/SrfK no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 35.011 33.438 2;3 1.3306E-18 16420 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 183.81 181.75 1645200000 151180000 164800000 132570000 2874000 3141400 2638700 159120000 136790000 137870000 3238700 0 1394100 113200000 105250000 98811000 0 0 0 136790000 149510000 144630000 1356500 0 0 14127 617;1511 13772 266102;266103;266104;266105;266106;266107;266108;266109;266110;266111;266112;266113;266114;266115;266116;266117;266118;266119;266120;266121;266122;266123;266124;266125;266126;266127;266128;266129;266130;266131 163438;163439;163440;163441;163442;163443;163444;163445;163446;163447;163448;163449;163450;163451;163452;163453;163454;163455;163456;163457;163458;163459;163460;163461;163462;163463;163464 163438 27 LYAIQPEETLTLDVK Unmodified 1731.9295 0.9294674 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 45.65 44.204 2;3 1.282E-06 21398 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.08 134.7 1220900000 44201000 40671000 34477000 0 0 1868400 135230000 132710000 116270000 13164000 10445000 9796500 114230000 110670000 105540000 3888400 2884700 2752800 113470000 114240000 107450000 2715200 0 4279600 14128 1468 13773 266132;266133;266134;266135;266136;266137;266138;266139;266140;266141;266142;266143;266144;266145;266146;266147;266148;266149;266150;266151;266152;266153;266154;266155;266156;266157;266158;266159;266160;266161;266162;266163 163465;163466;163467;163468;163469;163470;163471;163472;163473;163474;163475;163476;163477;163478;163479;163480;163481 163475 17 LYASGTK Unmodified 738.3912 0.39120462 141 P06989 hisI Histidine biosynthesis bifunctional protein HisIE;Phosphoribosyl-AMP cyclohydrolase;Phosphoribosyl-ATP pyrophosphatase yes yes 0 0 0 By MS/MS 1 10.662 11.514 2 0.026093 2804 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 72.138 50.592 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14129 141 13774 266164 163482 163482 1 LYDGAWSEWGAR Unmodified 1409.6364 0.6364137 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 40.677 39.151 2 7.3889E-17 18985 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 211.27 207.68 1141300000 115600000 101220000 107360000 0 0 0 119380000 114040000 105040000 0 0 0 85452000 74307000 72628000 0 1330100 0 80004000 85399000 79570000 0 0 0 14130 1364 13775 266165;266166;266167;266168;266169;266170;266171;266172;266173;266174;266175;266176;266177 163483;163484;163485;163486;163487;163488;163489;163490;163491;163492;163493;163494 163490 12 LYDHLNYTLTDDQELINMYR Unmodified 2529.1846 0.18458925 1673 P64467 cnu OriC-binding nucleoid-associated protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.185 46.836 3 1.3735E-15 22719 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.94 148.73 346170000 28699000 29301000 26912000 0 0 0 28190000 29373000 29185000 0 0 0 32115000 26729000 25758000 0 0 0 34474000 26675000 28755000 0 0 0 14131 1673 13776 266178;266179;266180;266181;266182;266183;266184;266185;266186;266187;266188;266189 163495;163496;163497;163498;163499;163500;163501;163502 163499 8 LYDKIPSSVWK Unmodified 1334.7234 0.72343779 724 P0ACE3 hha Hemolysin expression-modulating protein Hha yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.081 28.664 3 0.0090409 10690 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 59.418 57.945 122100000 3504700 0 5321400 2564800 3603700 3538100 4068000 3367700 3441300 11241000 10066000 7786700 0 0 2459900 6577600 5231800 5394100 3830500 4242500 5145000 10075000 9505500 11137000 14132 724 13777 266190;266191;266192;266193;266194;266195;266196;266197;266198;266199;266200;266201;266202;266203;266204;266205;266206;266207;266208;266209;266210 163503;163504 163503 2 LYDLDIESPGHEQK Unmodified 1642.7839 0.7838658 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 1 2 2 1 1 2 2 2 1 1 1 27.901 26.689 2;3 2.4051E-06 12215 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 145.28 121.67 396860000 46239000 44048000 37590000 4572900 5203500 5124000 23248000 27909000 26816000 3531500 0 3605800 19103000 21249000 16420000 1545400 0 1591900 30735000 36340000 32308000 2931500 3235700 3510200 14133 1183 13778 266211;266212;266213;266214;266215;266216;266217;266218;266219;266220;266221;266222;266223;266224;266225;266226;266227;266228;266229;266230;266231;266232;266233;266234;266235;266236;266237;266238;266239;266240;266241;266242;266243;266244;266245;266246;266247 163505;163506;163507;163508;163509;163510;163511;163512;163513;163514;163515;163516;163517;163518;163519;163520;163521;163522;163523;163524;163525 163515 19 LYDLSLGGMGALLETAKPAELQEGMR Unmodified 2762.3983 0.39828719 1804 P76010 ycgR Flagellar brake protein YcgR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 54.093 52.687 3 9.7176E-11 25771 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 127.38 125.04 107230000 37899000 35349000 33978000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14134 1804 13779 266248;266249;266250 163526;163527;163528 163528 3 LYDQMLEPK Unmodified 1135.5583 0.5583463 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.522 27.245 2 8.9115E-06 12392 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 168.27 157.04 1079500000 51666000 47798000 39010000 9934400 9560000 6327800 59886000 70616000 66890000 27493000 26398000 23560000 74973000 78906000 76296000 9699500 5990200 6410000 112430000 114050000 107830000 17440000 15494000 20843000 14135 927 13780 266251;266252;266253;266254;266255;266256;266257;266258;266259;266260;266261;266262;266263;266264;266265;266266;266267;266268;266269;266270;266271;266272;266273;266274 163529;163530;163531;163532;163533;163534;163535;163536;163537;163538;163539;163540;163541;163542;163543;163544;163545;163546;163547;163548;163549;163550 163547 22 LYDTYGFPVDLTADVCR Unmodified 2003.9299 0.92987811 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 53.02 51.594 2;3 7.8643E-11 25231 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 151.7 151.63 1100600000 84953000 85016000 74295000 0 0 2189200 94307000 91160000 74945000 4377200 3277700 4653900 92145000 81452000 78786000 0 0 0 104150000 117120000 105180000 2603400 0 0 14136 59 13781 266275;266276;266277;266278;266279;266280;266281;266282;266283;266284;266285;266286;266287;266288;266289;266290;266291;266292;266293;266294;266295;266296;266297;266298;266299;266300;266301;266302;266303 163551;163552;163553;163554;163555;163556;163557;163558 163551 7 LYDWVLDNITIPVHPR Unmodified 1950.0363 0.036332512 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 3 3 3 3 3 3 52.44 51.192 2;3;4 6.4009E-19 24142 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 250.48 244.99 5340400000 450130000 390080000 424130000 0 1852400 0 459180000 465180000 481830000 0 0 0 383770000 326260000 357590000 0 0 0 523830000 557730000 518810000 0 0 0 14137 63 13782 266304;266305;266306;266307;266308;266309;266310;266311;266312;266313;266314;266315;266316;266317;266318;266319;266320;266321;266322;266323;266324;266325;266326;266327;266328;266329;266330;266331;266332;266333;266334;266335;266336;266337;266338;266339;266340 163559;163560;163561;163562;163563;163564;163565;163566;163567;163568;163569;163570;163571;163572;163573;163574;163575;163576;163577;163578;163579;163580;163581;163582;163583;163584;163585;163586;163587 163581 29 LYEAGYITYMR Unmodified 1378.6591 0.65912298 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.89 35.504 2 7.9319E-05 12058 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 139.96 110.88 70015000 5865100 4563300 3675100 0 0 731160 5291400 5923600 6280700 0 0 0 5193800 5625300 0 5189700 3828600 3127800 0 7175000 0 3823900 0 3720500 14138 124 13783 266341;266342;266343;266344;266345;266346;266347;266348;266349;266350;266351;266352;266353;266354;266355;266356 163588;163589;163590;163591;163592;163593;163594;163595;163596;163597 163589 10 LYEGETLGVVGESGCGK Unmodified 1753.8193 0.81926503 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 1 1 1 1 1 1 1 2 2 2 31.12 29.492 2;3 2.814E-31 13708 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 239.48 238.23 612880000 105850000 90381000 82158000 28406000 24865000 26329000 18615000 22364000 19219000 17325000 17441000 13510000 17918000 17187000 14888000 0 0 0 24205000 25129000 20365000 8876000 9378700 8466300 14139 1935 13784 266357;266358;266359;266360;266361;266362;266363;266364;266365;266366;266367;266368;266369;266370;266371;266372;266373;266374;266375;266376;266377;266378;266379;266380;266381;266382;266383;266384;266385;266386;266387;266388 163598;163599;163600;163601;163602;163603;163604;163605;163606;163607;163608;163609;163610;163611;163612;163613;163614;163615;163616 163613 17 LYELCEIAR Unmodified 1165.5801 0.58014438 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.639 32.055 2 4.2762E-05 15396 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 150.88 118.04 5586100000 489310000 413320000 389340000 0 0 0 752610000 683560000 643060000 1135700 0 1122400 362380000 332940000 328730000 0 0 0 389490000 397300000 401770000 0 0 0 14140 256 13785 266389;266390;266391;266392;266393;266394;266395;266396;266397;266398;266399;266400;266401;266402 163617;163618;163619;163620;163621;163622;163623;163624;163625;163626;163627;163628 163619 12 LYELEMQK Unmodified 1052.5212 0.52123251 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 26.571 25.499 2 0.00094389 11816 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.54 111.81 1503800000 0 145960000 136700000 0 0 0 117950000 121420000 125840000 0 0 0 136750000 128440000 130950000 0 0 0 164400000 149280000 146140000 0 0 0 14141 149 13786 266403;266404;266405;266406;266407;266408;266409;266410;266411;266412;266413 163629;163630;163631;163632 163629 4 LYFEGELIDAATNKPVIK Unmodified 2020.0881 0.088093311 1669 P64451 ydcL Uncharacterized lipoprotein YdcL yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 42.784 41.247 3 0.003386 14478 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 54.805 54.288 47334000 0 23674000 0 7416100 7639500 7509500 0 0 0 0 0 0 0 0 1095000 0 0 0 0 0 0 0 0 0 14142 1669 13787 266414;266415;266416;266417;266418 163633;163634;163635;163636 163635 4 LYGLGTADMK Unmodified 1067.5321 0.53213155 1229 P23908 argE Acetylornithine deacetylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 28.894 27.741 2 0.00031842 12875 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.87 103.2 219410000 34857000 35051000 38769000 0 0 0 0 0 0 0 0 0 17452000 17318000 16698000 0 0 0 18060000 19874000 20326000 0 0 1006600 14143 1229 13788 266419;266420;266421;266422;266423;266424;266425;266426;266427;266428 163637;163638 163637 2 LYGPTGIGVLYGK Unmodified 1336.7391 0.73908786 1967 Q46925 csdA Cysteine desulfurase CsdA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.852 39.187 2 2.8397E-05 18898 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.2 102.46 88577000 7188200 7314400 7556400 0 0 0 6246800 6109600 6689700 0 0 0 5577800 6227600 6861700 0 0 0 9257200 10991000 8556200 0 0 0 14144 1967 13789 266429;266430;266431;266432;266433;266434;266435;266436;266437;266438;266439;266440 163639 163639 1 LYHDAMVAEVCSSQQIFR Unmodified 2153.0034 0.0033941785 810 P0ADU7 yqiB Uncharacterized protein YqiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 35.301 35.39 3 7.4648E-23 12738 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 156.5 151.5 41371000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14607000 15371000 11392000 0 0 0 0 0 0 14145 810 13790 266441;266442;266443 163640;163641;163642 163640 3 LYHEEEVTVYDPQDVEFK Unmodified 2239.0321 0.032094574 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 35.977 34.293 2;3 2.1406E-22 16502 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 236.92 226.87 1466000000 103240000 134250000 98280000 5269900 4167100 4809000 140440000 120090000 120530000 5143200 4209600 4296500 92326000 82678000 87509000 0 0 0 143950000 156850000 149340000 0 3863900 4808700 14146 292 13791 266444;266445;266446;266447;266448;266449;266450;266451;266452;266453;266454;266455;266456;266457;266458;266459;266460;266461;266462;266463;266464;266465;266466;266467;266468;266469;266470;266471;266472;266473;266474;266475 163643;163644;163645;163646;163647;163648;163649;163650;163651;163652;163653;163654;163655;163656;163657;163658;163659;163660;163661;163662;163663;163664;163665;163666;163667 163652 23 LYHFPHGGDVIDSPGVR Unmodified 1864.922 0.92203104 1519 P39286 rsgA Putative ribosome biogenesis GTPase RsgA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 26.693 25.553 3;4 0.00010606 11514 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 70.783 68.96 298060000 43935000 40154000 36809000 0 0 0 21240000 20928000 19205000 0 0 0 18077000 15911000 18549000 0 0 0 20299000 17215000 25735000 0 0 0 14147 1519 13792 266476;266477;266478;266479;266480;266481;266482;266483;266484;266485;266486;266487;266488;266489;266490;266491;266492;266493;266494;266495;266496;266497;266498;266499 163668;163669;163670;163671 163671 4 LYHPSLPENQGHEIAAR Unmodified 1930.965 0.96495848 53 P00935 metB Cystathionine gamma-synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 19.563 20.022 3 0.11273 8034 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 33.697 29.526 52728000 6605300 6408000 4401800 0 0 0 9885000 8941300 5292500 0 0 0 0 2655600 4303400 0 0 0 0 0 4234800 0 0 0 14148 53 13793 266500;266501;266502;266503;266504;266505;266506;266507;266508 163672 163672 0 LYHVLNK Unmodified 885.50724 0.50723743 1912 P77526 yfcG Disulfide-bond oxidoreductase YfcG yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 13.29 14.111 2 0.019212 4419 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.944 42.138 48874000 16349000 12782000 13240000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3546600 0 2956200 0 0 0 14149 1912 13794 266509;266510;266511;266512;266513 163673 163673 1 LYIETMEK Unmodified 1025.5103 0.51033348 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 26.155 24.7 2 0.00074805 8030 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 124.83 109.4 181090000 0 0 0 10837000 12756000 12147000 49470000 0 0 20689000 20955000 18142000 0 0 0 0 0 0 0 0 0 14257000 9830400 12009000 14150 649 13795 266514;266515;266516;266517;266518;266519;266520;266521;266522;266523 163674;163675;163676;163677;163678 163678 5 LYILQER Unmodified 933.52837 0.5283668 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.932 26.717 2 0.00084363 11964 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143.37 53.694 982610000 80253000 73706000 58001000 7200600 7345900 8211200 63975000 67927000 54369000 9851900 12926000 11629000 60949000 59312000 54033000 9223500 5826000 6659800 94600000 99467000 104770000 10223000 11966000 10184000 14151 862 13796 266524;266525;266526;266527;266528;266529;266530;266531;266532;266533;266534;266535;266536;266537;266538;266539;266540;266541;266542;266543;266544;266545;266546;266547 163679;163680;163681;163682;163683;163684;163685;163686;163687;163688;163689;163690;163691;163692;163693;163694;163695;163696;163697;163698;163699;163700 163697 22 LYINADNEASIR Unmodified 1377.6888 0.6888432 799 P0ADQ2 yiiD Uncharacterized protein YiiD yes yes 0 0 0 By MS/MS 1 27.05 26.098 2 0.0072704 11373 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 67.726 59.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14152 799 13797 266548 163701 163701 1 LYIVSNK Unmodified 835.48035 0.48035398 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.354 18.71 2 0.00045787 7085 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.61 133.77 1640200000 40786000 44388000 38346000 13875000 15338000 14018000 133970000 140270000 114740000 38384000 28203000 25247000 130600000 118470000 108510000 15772000 10079000 11452000 175490000 165260000 173250000 25642000 27636000 30493000 14153 644 13798 266549;266550;266551;266552;266553;266554;266555;266556;266557;266558;266559;266560;266561;266562;266563;266564;266565;266566;266567;266568;266569;266570;266571;266572 163702;163703;163704;163705;163706;163707;163708;163709;163710;163711;163712;163713;163714;163715;163716;163717;163718;163719;163720;163721;163722;163723;163724;163725;163726 163711 22 LYIYDHCPYCLK Unmodified 1643.7476 0.74762041 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 30.627 29.225 2;3 5.1536E-07 13688 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 140.75 133.19 1975700000 481470000 508400000 397360000 1390900 1471800 1640400 125740000 141460000 167360000 0 0 0 13150000 24873000 13746000 0 0 0 35975000 25183000 36521000 0 0 0 14154 703 13799 266573;266574;266575;266576;266577;266578;266579;266580;266581;266582;266583;266584;266585;266586;266587;266588;266589;266590;266591;266592;266593;266594;266595;266596;266597 163727;163728;163729;163730;163731;163732;163733;163734;163735;163736;163737;163738;163739;163740;163741;163742;163743;163744;163745;163746 163736 20 LYKEDLIYR Unmodified 1211.655 0.65502388 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 3 2 1 1 1 2 2 2 1 2 2 2 1 22.297 22.069 2;3 8.4774E-06 9031 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.4 133.46 2134000000 173890000 160100000 166120000 0 0 1225900 169110000 175770000 179220000 2056700 1897100 1950500 143950000 124220000 148230000 0 759820 0 210240000 259170000 214670000 1406800 0 0 14155 158 13800 266598;266599;266600;266601;266602;266603;266604;266605;266606;266607;266608;266609;266610;266611;266612;266613;266614;266615;266616;266617;266618;266619;266620;266621;266622;266623;266624;266625;266626;266627;266628 163747;163748;163749;163750;163751;163752;163753;163754;163755;163756;163757;163758;163759;163760;163761;163762;163763;163764;163765;163766;163767;163768 163761 22 LYLHPEALSEK Unmodified 1298.6871 0.68705229 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.252 22.522 2 0.00028537 9623 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.309 85.777 72953000 8814200 10087000 8383700 0 0 0 6694000 5908000 3294500 0 0 0 5919500 6127700 5309500 0 0 0 3952700 5027300 3434900 0 0 0 14156 389 13801 266629;266630;266631;266632;266633;266634;266635;266636;266637;266638;266639;266640 163769;163770;163771;163772;163773 163772 5 LYLISHIPGADYIDTNEVESEPLWNK Unmodified 3015.4866 0.48656815 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 52.239 50.987 3 5.6322E-16 23786 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 151.94 141.04 1126100000 22182000 0 23568000 0 0 0 105080000 109090000 102280000 0 0 0 166440000 147230000 153560000 0 0 0 100480000 99538000 96655000 0 0 0 14157 1947 13802 266641;266642;266643;266644;266645;266646;266647;266648;266649;266650;266651 163774;163775;163776;163777;163778;163779;163780;163781;163782;163783 163783 10 LYLIVDKENEK Unmodified 1362.7395 0.73948179 488 P0A951 speG Spermidine N(1)-acetyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 2 23.116 22.609 2;3 0.00013654 9603 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 85.821 80.433 130940000 31339000 45540000 26074000 0 0 0 0 0 0 0 0 0 0 9674800 18315000 0 0 0 0 0 0 0 0 0 14158 488 13803 266652;266653;266654;266655;266656;266657;266658 163784;163785;163786 163786 3 LYLPDIK Unmodified 860.50076 0.50075507 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.744 33.245 2 0.0028071 11782 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 110.61 41.222 1031700000 93614000 86135000 82434000 1609500 924490 754070 94179000 85806000 85382000 3792400 3030000 4486200 61204000 56435000 54782000 26476000 23829000 23653000 73825000 85058000 79140000 1904000 1827400 1422100 14159 37 13804 266659;266660;266661;266662;266663;266664;266665;266666;266667;266668;266669;266670;266671;266672;266673;266674;266675;266676;266677;266678;266679;266680;266681;266682 163787;163788;163789;163790;163791;163792;163793;163794;163795;163796;163797;163798;163799;163800;163801 163787 15 LYNDAGISNDR Unmodified 1236.5735 0.57347909 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 2 2 2 1 1 2 2 1 16.898 17.575 2 1.3413E-19 6065 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 229.48 213.01 9023800000 559110000 558220000 494820000 0 0 0 956310000 938200000 902360000 0 0 0 804900000 739030000 879580000 1971200 1778600 0 729840000 731950000 725770000 0 0 0 14160 402 13805 266683;266684;266685;266686;266687;266688;266689;266690;266691;266692;266693;266694;266695;266696;266697;266698;266699;266700;266701;266702;266703 163802;163803;163804;163805;163806;163807;163808;163809;163810;163811;163812;163813;163814;163815;163816 163811 15 LYNIVPYGIDATGHIDYADLEK Unmodified 2479.2271 0.22710599 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 49.628 48.221 2;3 6.9626E-10 23560 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142.19 140.21 11662000000 1836600000 1802300000 1766900000 13934000 15698000 11174000 843120000 731450000 644770000 4472900 4962700 3915000 614770000 597960000 561360000 0 0 0 808470000 714610000 682150000 3771200 0 0 14161 391 13806 266704;266705;266706;266707;266708;266709;266710;266711;266712;266713;266714;266715;266716;266717;266718;266719;266720;266721;266722;266723;266724;266725;266726;266727;266728;266729;266730;266731;266732;266733;266734 163817;163818;163819;163820;163821;163822;163823;163824;163825;163826;163827;163828;163829;163830;163831;163832;163833;163834;163835;163836;163837;163838;163839;163840;163841;163842;163843;163844;163845 163836 28 LYNLPADVLPR Unmodified 1269.7081 0.70812208 1694 P64602 mlaB Probable phospholipid ABC transporter-binding protein MlaB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 42.908 41.279 2 7.9009E-05 19436 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 123.86 95.686 105640000 3263400 0 0 1069400 951220 905570 10759000 13081000 7934800 0 0 0 11631000 9611300 12006000 0 0 0 10980000 11332000 12117000 0 0 0 14162 1694 13807 266735;266736;266737;266738;266739;266740;266741;266742;266743;266744;266745;266746;266747 163846;163847;163848;163849;163850;163851;163852 163851 7 LYPANATTNSSHGVTSIDAIMPVLER Unmodified 2756.3803 0.38032894 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 45.277 43.974 3 4.4071E-16 21486 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.17 150.34 932850000 193640000 193120000 174080000 0 0 0 0 0 0 0 0 0 48910000 56570000 49387000 0 0 0 67460000 74077000 75608000 0 0 0 14163 104 13808 266748;266749;266750;266751;266752;266753;266754;266755;266756 163853;163854;163855;163856;163857;163858;163859;163860;163861 163856 9 LYPDQPVEVLAADLR Unmodified 1697.8988 0.89883598 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 1 50.695 49.352 2;3 1.4196E-06 24338 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 112.43 103.43 1000900000 98049000 96850000 83025000 0 0 0 99764000 102000000 99835000 0 0 0 78069000 69156000 76912000 0 0 0 66863000 76600000 53808000 0 0 0 14164 801 13809 266757;266758;266759;266760;266761;266762;266763;266764;266765;266766;266767;266768;266769;266770;266771;266772;266773;266774;266775;266776;266777;266778;266779 163862;163863;163864;163865;163866;163867;163868;163869;163870;163871;163872;163873;163874;163875;163876;163877;163878;163879;163880 163866 19 LYPENNEAR Unmodified 1104.52 0.51998696 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.951 13.579 2 0.0013108 3323 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 89.142 86.136 312270000 0 4715700 3880200 0 0 0 38220000 44691000 35696000 25100000 21860000 22781000 15987000 18318000 17428000 0 0 0 13590000 19660000 15496000 4846100 5056500 4947900 14165 1747 13810 266780;266781;266782;266783;266784;266785;266786;266787;266788;266789;266790;266791;266792;266793;266794;266795;266796 163881;163882;163883;163884;163885;163886;163887 163882 5 LYPFTWDAVR Unmodified 1266.6397 0.63970816 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.07 46.642 2 3.3129E-05 22427 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.61 137.31 3194200000 62317000 62735000 52258000 0 0 0 259380000 241590000 233450000 0 0 0 335250000 286230000 275940000 0 0 0 422290000 474340000 479690000 3253600 3097400 2400800 14166 895 13811 266797;266798;266799;266800;266801;266802;266803;266804;266805;266806;266807;266808;266809;266810;266811 163888;163889;163890;163891;163892;163893;163894;163895;163896;163897;163898;163899;163900;163901;163902;163903;163904;163905;163906 163898 19 LYPNGPADINHFQAAGGVPVLVR Unmodified 2404.2652 0.26516325 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 42.913 41.317 3 2.8193E-15 20573 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 145.88 144.04 479570000 0 5751400 3384300 0 0 0 70328000 66108000 57154000 0 0 0 43070000 39508000 41046000 0 0 0 53323000 51984000 47912000 0 0 0 14167 785 13812 266812;266813;266814;266815;266816;266817;266818;266819;266820;266821;266822 163907;163908;163909;163910;163911;163912;163913;163914;163915 163907 9 LYPNVDFYSGIILK Unmodified 1640.8814 0.881395 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 2 1 1 2 2 2 1 1 1 2 1 1 1 2 2 1 1 53.109 51.71 2;3 2.1863E-05 25436 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.77 104.76 2612400000 683130000 612710000 454320000 2976000 0 0 152220000 144660000 137310000 3537300 4465900 4742500 68528000 63078000 0 0 738220 0 134740000 0 140190000 0 2619100 2435800 14168 657 13813 266823;266824;266825;266826;266827;266828;266829;266830;266831;266832;266833;266834;266835;266836;266837;266838;266839;266840;266841;266842;266843;266844;266845;266846;266847;266848 163916;163917;163918;163919;163920;163921;163922;163923;163924;163925;163926;163927;163928;163929;163930;163931;163932;163933;163934;163935 163926 17 LYPVANTPAAMLELGVEGVK Unmodified 2071.1024 0.10236317 637 P0AB83 nth Endonuclease III yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 52.654 52.709 2 5.2042E-23 20453 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 186.56 181.49 42210000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14207000 10588000 17414000 0 0 0 0 0 0 14169 637 13814 266849;266850;266851 163936;163937 163936 2 LYPVTMAVSK Unmodified 1107.5998 0.59981719 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.772 28.362 2 0.0030405 13089 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 75.378 72.54 1725000000 82404000 83104000 83880000 767430 809600 735730 134250000 146360000 139540000 0 1115700 1127700 147060000 158510000 139170000 0 0 0 196950000 205990000 203240000 0 0 0 14170 1489 13815 266852;266853;266854;266855;266856;266857;266858;266859;266860;266861;266862;266863;266864;266865;266866;266867;266868 163938;163939;163940;163941;163942;163943;163944;163945;163946;163947;163948;163949 163943 12 LYPWEFMLR Unmodified 1253.6267 0.62670064 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.689 53.25 2 0.00030794 25092 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 117.16 80.001 249970000 28528000 23814000 22407000 0 1501300 1733500 17668000 14193000 10255000 0 3380000 2766700 15805000 11899000 13853000 0 0 0 29329000 26249000 20425000 3056200 3110700 0 14171 806 13816 266869;266870;266871;266872;266873;266874;266875;266876;266877;266878;266879;266880;266881;266882;266883;266884;266885;266886 163950;163951;163952;163953;163954 163954 5 LYQGINVHNAER Unmodified 1412.7161 0.71606101 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 1 1 1 15.845 16.508 2;3 9.2862E-06 5612 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 150.08 136.48 324090000 11496000 16026000 13708000 4914000 4604500 3630100 33160000 29605000 31725000 4800400 8787100 5221900 20028000 18897000 22164000 0 2464600 0 32180000 26089000 21618000 6238900 3743700 2984200 14172 324 13817 266887;266888;266889;266890;266891;266892;266893;266894;266895;266896;266897;266898;266899;266900;266901;266902;266903;266904;266905;266906;266907;266908;266909;266910;266911;266912;266913;266914;266915;266916;266917;266918;266919;266920;266921;266922;266923;266924;266925 163955;163956;163957;163958;163959;163960;163961;163962;163963;163964;163965;163966 163960 11 LYQGLEAFCPLR Unmodified 1465.7388 0.73877028 1336 P30125 leuB 3-isopropylmalate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 44.902 43.299 2 2.1511E-06 21024 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.8 165.82 255080000 68031000 78391000 66833000 0 0 0 8878200 6827700 7147000 0 0 0 0 0 0 0 0 0 8468700 10500000 0 0 0 0 14173 1336 13818 266926;266927;266928;266929;266930;266931;266932;266933 163967;163968 163968 2 LYQLIWR Unmodified 990.56509 0.56508666 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.799 39.203 2 0.00016514 18228 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 168.62 149.89 948830000 58625000 59450000 62448000 0 0 0 82154000 72346000 81102000 5290100 4643200 5753700 66086000 63983000 68101000 10594000 6987400 7488800 86961000 96876000 89506000 6850000 6559700 7024300 14174 124 13819 266934;266935;266936;266937;266938;266939;266940;266941;266942;266943;266944;266945;266946;266947;266948;266949;266950;266951;266952;266953;266954 163969;163970;163971;163972;163973;163974;163975;163976;163977;163978;163979;163980;163981;163982;163983;163984;163985;163986 163985 16 LYQPQDATTNPSLILNAAQIPEYR Unmodified 2715.3868 0.38679453 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 1 2 2 2 50.935 49.772 2;3 1.6502E-71 24433 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 278.85 268 10166000000 537050000 446520000 420770000 3678300 3451400 3262400 984090000 926200000 846500000 0 0 0 985380000 885380000 928220000 0 1905000 1311600 1146800000 1074400000 971020000 0 0 0 14175 402 13820 266955;266956;266957;266958;266959;266960;266961;266962;266963;266964;266965;266966;266967;266968;266969;266970;266971;266972;266973;266974;266975;266976;266977;266978;266979;266980;266981;266982;266983 163987;163988;163989;163990;163991;163992;163993;163994;163995;163996;163997;163998;163999;164000;164001;164002;164003;164004;164005;164006;164007;164008;164009;164010 163992 24 LYQTVGQLIK Unmodified 1161.6758 0.67575932 1231 P23917 mak Fructokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.597 30.241 2 0.00064327 14280 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.698 63.593 543560000 71539000 58304000 47811000 0 0 0 61907000 54204000 56249000 0 0 0 28956000 28179000 27205000 0 0 0 40206000 32172000 36825000 0 0 0 14176 1231 13821 266984;266985;266986;266987;266988;266989;266990;266991;266992;266993;266994;266995 164011;164012;164013;164014;164015;164016;164017;164018;164019;164020;164021;164022 164014 12 LYRPGTSILEVTGEVVR Unmodified 1888.0418 0.04181182 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 38.932 37.256 2;3 2.0159E-24 18077 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 220.46 207.26 2911400000 407200000 347710000 311970000 1011100 0 1158100 290290000 256800000 287340000 0 0 0 153240000 138510000 146830000 0 0 0 212060000 185790000 171520000 0 0 0 14177 1100 13822 266996;266997;266998;266999;267000;267001;267002;267003;267004;267005;267006;267007;267008;267009;267010;267011;267012;267013;267014;267015;267016;267017;267018;267019;267020;267021 164023;164024;164025;164026;164027;164028;164029;164030;164031;164032;164033;164034;164035;164036;164037;164038;164039;164040;164041;164042;164043;164044;164045;164046 164032 24 LYSGYSDSNQDNPLLYFCQHR Unmodified 2576.139 0.13903604 767 P0AD42 pgpC Phosphatidylglycerophosphatase C yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.221 43.403 3 0.00012167 17728 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 70.335 70.335 75580000 0 0 0 875260 1238600 0 14734000 9388200 6395200 4248200 5483500 4426200 7970700 4765500 5647000 0 0 0 4437300 0 0 1816200 2185300 1969200 14178 767 13823 267022;267023;267024;267025;267026;267027;267028;267029;267030;267031;267032;267033;267034;267035;267036 164047;164048;164049 164047 3 LYSIASSQAEVENEVHVTVGVVR Unmodified 2485.2813 0.28126682 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.734 40.867 3 6.7087E-07 20213 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 105.06 102.91 318270000 0 25121000 25377000 1992500 1881300 1307400 34014000 32682000 28160000 2564000 2176500 2891600 20612000 23063000 19558000 0 0 0 36609000 27613000 32646000 0 0 0 14179 1503 13824 267037;267038;267039;267040;267041;267042;267043;267044;267045;267046;267047;267048;267049;267050;267051;267052;267053 164050;164051;164052;164053;164054;164055;164056 164053 2 LYTDYSLLTADAR Unmodified 1500.746 0.74602373 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 41.011 39.495 2 0.00088115 19198 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.363 81.123 65877000 15298000 17686000 14528000 0 1265600 0 0 0 0 0 0 0 3977200 3609800 3594700 0 0 0 5918300 0 0 0 0 0 14180 326 13825 267054;267055;267056;267057;267058;267059;267060;267061 164057 164057 0 LYTGEIPLFSHYQIESQIESAFQR Unmodified 2855.413 0.41300928 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.798 52.578 3 4.012E-15 25842 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.26 130.67 231460000 37554000 40473000 33370000 0 0 0 13360000 0 11116000 0 5577700 0 13279000 12132000 11499000 4042600 5028900 0 20188000 18811000 0 0 0 5025600 14181 1183 13826 267062;267063;267064;267065;267066;267067;267068;267069;267070;267071;267072;267073;267074;267075 164058;164059 164059 2 LYTSLGDAAVGR Unmodified 1221.6354 0.63535107 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 28.225 26.983 2;3 4.0644E-09 12555 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 178.22 157.32 7647300000 698920000 746080000 644450000 20736000 18683000 22178000 464480000 437910000 432680000 18820000 21306000 19189000 666810000 642730000 603510000 50825000 31040000 32934000 641790000 677930000 606850000 51217000 46531000 49752000 14182 300 13827 267076;267077;267078;267079;267080;267081;267082;267083;267084;267085;267086;267087;267088;267089;267090;267091;267092;267093;267094;267095;267096;267097;267098;267099;267100;267101;267102;267103;267104;267105;267106;267107;267108;267109;267110;267111 164060;164061;164062;164063;164064;164065;164066;164067;164068;164069;164070;164071;164072;164073;164074;164075;164076;164077 164064 18 LYTSSWR Unmodified 911.45012 0.45011648 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.363 20.53 2 0.0008957 6671 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 141.98 137.77 763920000 56937000 54023000 49663000 1547000 1778600 1536300 62017000 56670000 54094000 10905000 10128000 8175500 66747000 47560000 46046000 11155000 9854200 8979300 62383000 64462000 64445000 4551700 5360400 4904100 14183 1576 13828 267112;267113;267114;267115;267116;267117;267118;267119;267120;267121;267122;267123;267124;267125;267126;267127;267128;267129;267130;267131;267132;267133;267134;267135 164078;164079;164080;164081;164082;164083;164084;164085;164086;164087;164088;164089 164082 12 LYTTNADGELITIDTADNK Unmodified 2067.0008 0.0007944461 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 1 2 2 2 2 3 2 2 2 2 2 3 3 2 2 2 38.285 36.709 2;3 1.4504E-45 18100 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 327.82 322.73 1262000000 70161000 66618000 48909000 3430200 3191100 3579900 55338000 57503000 55654000 6773700 6617700 7711000 93679000 92921000 84168000 11187000 6040800 8442300 170400000 181690000 160030000 25135000 22760000 20054000 14184 1819 13829 267136;267137;267138;267139;267140;267141;267142;267143;267144;267145;267146;267147;267148;267149;267150;267151;267152;267153;267154;267155;267156;267157;267158;267159;267160;267161;267162;267163;267164;267165;267166;267167;267168;267169;267170;267171;267172;267173;267174;267175;267176;267177;267178;267179;267180;267181;267182 164090;164091;164092;164093;164094;164095;164096;164097;164098;164099;164100;164101;164102;164103;164104;164105;164106;164107;164108;164109;164110;164111;164112;164113;164114;164115;164116;164117;164118 164097 29 LYVLVFTTEK Unmodified 1211.6802 0.680176 83 P03841 malM Maltose operon periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 45.092 43.484 1;2 0.0001514 21076 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 144.09 141.69 1633100000 90950000 94328000 85007000 2336100 2181700 2147400 152750000 136800000 126340000 11191000 14065000 10516000 124700000 99203000 93857000 0 0 0 202010000 183040000 185730000 6003700 5339600 4645800 14185 83 13830 267183;267184;267185;267186;267187;267188;267189;267190;267191;267192;267193;267194;267195;267196;267197;267198;267199;267200;267201;267202;267203;267204;267205;267206;267207;267208;267209;267210;267211;267212;267213;267214 164119;164120;164121;164122;164123;164124;164125;164126;164127;164128;164129;164130;164131;164132;164133;164134;164135;164136;164137;164138;164139 164132 17 LYVPVSSLHLISR Unmodified 1482.8558 0.85584895 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.325 37.837 3 7.8125E-06 18262 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 110.8 106.46 331830000 36667000 35249000 34006000 641830 779370 945610 22853000 20922000 20625000 0 0 1909800 18293000 16402000 18073000 10281000 4447700 9740300 27403000 23101000 27179000 1109700 0 1197700 14186 1355 13831 267215;267216;267217;267218;267219;267220;267221;267222;267223;267224;267225;267226;267227;267228;267229;267230;267231;267232;267233;267234;267235 164140;164141;164142;164143;164144;164145;164146;164147;164148;164149;164150;164151;164152 164147 11 LYVQDGVYDR Unmodified 1226.5932 0.5931519 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.657 23.563 2 5.0462E-05 10301 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 135.79 102.95 1167700000 214920000 239930000 195940000 0 0 0 113800000 102720000 97923000 2714900 3100700 2438400 22989000 16971000 18133000 0 0 0 46876000 47814000 41376000 0 0 0 14187 1258 13832 267236;267237;267238;267239;267240;267241;267242;267243;267244;267245;267246;267247;267248;267249;267250 164153;164154;164155;164156;164157;164158;164159;164160;164161;164162;164163 164160 3 LYVSENQLK Unmodified 1092.5815 0.58152458 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 21.455 21.44 2 4.1169E-05 6720 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 151.29 126.66 11431000000 74784000 0 63188000 2368600 1528000 1657300 0 0 0 2315300000 4249500000 4216100000 58941000 54888000 51262000 0 0 0 94296000 92420000 87888000 27401000 19850000 19335000 14188 497 13833 267251;267252;267253;267254;267255;267256;267257;267258;267259;267260;267261;267262;267263;267264;267265;267266;267267;267268;267269;267270 164164;164165;164166;164167;164168;164169;164170;164171;164172;164173;164174;164175;164176;164177;164178;164179;164180;164181;164182;164183;164184 164178 19 LYWSAQPPVHCPLAR Unmodified 1793.9035 0.9035442 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 2 1 1 1 2 2 2 2 2 2 33.091 31.689 2;3 4.0089E-10 15097 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 157.24 137.48 389650000 4465500 59240000 0 0 0 0 4298700 3866200 2750200 0 0 0 46121000 46101000 40917000 0 0 0 50198000 64513000 67183000 0 0 0 14189 1548 13834 267271;267272;267273;267274;267275;267276;267277;267278;267279;267280;267281;267282;267283;267284;267285;267286;267287;267288 164185;164186 164185 1 LYYGHFMCYVFHQDYIVK Unmodified 2382.0966 0.096566282 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.786 43.029 4 0.0055282 17129 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 45.618 42.866 170710000 0 0 3177000 2472200 3794600 3045600 13752000 9395200 9991600 26175000 27854000 28114000 4741000 3960400 3646400 0 0 0 5592300 5321300 5870800 3855300 5562800 4390000 14190 122 13835 267289;267290;267291;267292;267293;267294;267295;267296;267297;267298;267299;267300;267301;267302;267303;267304;267305;267306;267307 164187;164188;164189;164190;164191;164192 164189 6 MAAEEFTQAMNGVR Unmodified 1553.6966 0.69664747 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 34.985 33.655 2 0.00086449 16046 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 71.524 64.318 29433000 0 3328400 0 0 0 0 0 0 0 0 0 0 2402700 2012800 3157400 0 0 0 6104900 6222800 6203600 0 0 0 14191 1203 13836 267308;267309;267310;267311;267312;267313;267314 164193 164193 0 MAALGQSIGGIFPSDEIVK Unmodified 1932.0026 0.002649122 1178 P21363 yciE Protein YciE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.732 49.395 2 2.8672E-18 24260 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 242.48 234.87 520050000 161030000 150580000 155710000 2352500 2054100 1820900 10099000 9531300 11789000 0 0 0 2605100 0 0 0 0 0 5331000 7144900 0 0 0 0 14192 1178 13837 267315;267316;267317;267318;267319;267320;267321;267322;267323;267324;267325;267326 164194;164195;164196 164194 3 MAALIQSGLDLSPIITHR Unmodified 1935.0612 0.061167054 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 1 1 1 1 1 1 1 48.565 47.246 2;3 6.0775E-18 23463 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 194.24 188.4 3589400000 339980000 355280000 381880000 0 1362900 1834800 306930000 300680000 267190000 0 0 0 304200000 243980000 217440000 0 0 0 315100000 278350000 275190000 0 0 0 14193 172 13838 267327;267328;267329;267330;267331;267332;267333;267334;267335;267336;267337;267338;267339;267340;267341;267342;267343 164197;164198;164199;164200;164201;164202;164203;164204;164205;164206;164207;164208;164209;164210;164211 164199 14 MAAQGTAGR Unmodified 861.41269 0.41268512 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 8.0518 8.8177 2 0.001843 2067 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.251 42.64 32540000 299110 3657500 5325300 0 0 0 0 10363000 0 0 0 0 0 0 0 0 0 0 3980100 4200000 4715400 0 0 0 14194 121 13839 267344;267345;267346;267347;267348;267349;267350;267351 164212;164213;164214;164215;164216;164217 164215 6 MAASGLETR Unmodified 934.45422 0.45421558 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 13.542 14.533 2 8.9344E-06 3278 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 168.23 147.68 64971000 0 0 0 19137000 20064000 17999000 0 2835400 0 0 0 0 0 1412300 1589000 0 0 0 0 0 1932900 0 0 0 14195 1904 13840 267352;267353;267354;267355;267356;267357;267358 164218;164219;164220 164219 3 MAASRPYAETMR Unmodified 1382.6435 0.64348969 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 1 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 13.539 14.11 2;3 3.0388E-06 3754 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 158.79 146.74 900530000 22686000 17657000 18390000 17102000 15610000 18481000 14361000 54269000 12035000 54015000 60727000 57538000 15861000 18267000 50814000 20922000 13854000 16327000 63030000 59167000 74149000 67405000 68611000 69257000 14196 644 13841 267359;267360;267361;267362;267363;267364;267365;267366;267367;267368;267369;267370;267371;267372;267373;267374;267375;267376;267377;267378;267379;267380;267381;267382;267383;267384;267385;267386;267387;267388;267389;267390;267391;267392;267393;267394;267395;267396;267397;267398;267399;267400;267401;267402 164221;164222;164223;164224;164225;164226;164227;164228;164229;164230;164231;164232 164225 12 MADAIDAYQPDYVVLAK Unmodified 1881.9183 0.91825079 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.311 43.875 2 9.9925E-09 21476 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 123.92 112.66 978940000 186580000 159540000 150140000 0 0 0 49266000 42107000 43908000 0 0 0 51591000 50961000 46019000 0 0 0 68165000 69038000 61621000 0 0 0 14197 1455 13842 267403;267404;267405;267406;267407;267408;267409;267410;267411;267412;267413;267414 164233;164234;164235;164236;164237;164238;164239;164240;164241;164242;164243;164244 164239 12 MADLLDATHGYQLTDVAEEADVLLLNTCSIR Unmodified 3446.6698 0.6697706 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.436 53.985 3 9.6658E-18 26602 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143.07 141.15 445930000 40367000 33144000 34782000 11607000 12691000 11300000 0 18502000 19716000 7975900 10232000 11452000 0 26756000 33414000 0 0 0 55756000 40947000 47027000 10016000 10565000 9685100 14198 862 13843 267415;267416;267417;267418;267419;267420;267421;267422;267423;267424;267425;267426;267427;267428;267429;267430;267431;267432;267433 164245 164245 1 MADSDALR Unmodified 877.39637 0.39636635 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.357 13.968 2 0.00019486 3516 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 153.15 130.22 1460800000 83317000 64012000 68511000 13354000 11977000 12977000 90341000 103160000 95656000 32231000 29195000 33339000 134560000 110920000 103020000 8784600 8822000 8549200 127060000 127480000 139800000 18306000 17687000 17765000 14199 1044 13844 267434;267435;267436;267437;267438;267439;267440;267441;267442;267443;267444;267445;267446;267447;267448;267449;267450;267451;267452;267453;267454;267455;267456;267457 164246;164247;164248;164249;164250;164251;164252;164253;164254;164255;164256;164257;164258;164259;164260;164261;164262;164263;164264;164265;164266;164267;164268;164269 164251 24 MADSDALR Oxidation (M) 893.39128 0.39128097 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.415 12.315 2 0.1149 3204 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 42.396 21.132 117100000 0 0 0 1462700 1619700 0 19471000 17537000 16272000 0 0 0 12589000 0 8204400 0 0 0 16385000 12155000 11403000 0 0 0 14200 1044 13844 267458;267459;267460;267461;267462;267463;267464;267465;267466;267467 164270 164270 0 MAEENKWTDNAEPTEDSSDYHVTTSQHAR Unmodified 3348.4225 0.4225407 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 18.802 19.124 4;5 3.3023E-11 6075 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 121.72 119.96 729290000 52363000 60924000 49717000 7093600 7025100 4019300 34214000 27037000 20431000 49199000 35613000 35807000 53969000 40589000 41797000 29452000 28946000 28023000 39963000 34724000 23375000 9632200 5332600 10039000 14201 297 13845 267468;267469;267470;267471;267472;267473;267474;267475;267476;267477;267478;267479;267480;267481;267482;267483;267484;267485;267486;267487;267488;267489;267490;267491;267492;267493;267494;267495;267496;267497;267498;267499;267500;267501;267502;267503;267504;267505;267506;267507;267508;267509;267510;267511;267512 164271;164272;164273;164274;164275;164276;164277;164278;164279;164280;164281;164282;164283;164284;164285;164286;164287;164288;164289;164290;164291;164292;164293;164294;164295;164296 164278 26 MAEFGSCHR Oxidation (M) 1109.4382 0.43824794 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 1 1 10.8 11.613 2;3 1.0614E-05 2819 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.06 169.06 269280000 19461000 15977000 18636000 0 0 0 20100000 38940000 38970000 0 0 0 27387000 22249000 21908000 0 0 0 18628000 14219000 12805000 0 0 0 14202 445 13846 267513;267514;267515;267516;267517;267518;267519;267520;267521;267522;267523;267524;267525;267526;267527;267528;267529;267530;267531;267532 164297;164298;164299;164300;164301;164302;164303;164304;164305;164306;164307;164308;164309 164297 215 13 MAEFGSCHR Unmodified 1093.4433 0.44333332 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 12.124 12.756 2;3 2.2879E-08 3539 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 190.08 189.29 2791900000 198280000 214820000 162620000 0 0 2776700 253880000 258080000 239070000 5177000 0 5427000 259140000 207260000 212010000 2341100 1661400 1045900 240430000 255860000 268870000 1410900 662900 1061900 14203 445 13846 267533;267534;267535;267536;267537;267538;267539;267540;267541;267542;267543;267544;267545;267546;267547;267548;267549;267550;267551;267552;267553;267554;267555;267556;267557;267558;267559;267560;267561;267562;267563;267564;267565;267566;267567;267568 164310;164311;164312;164313;164314;164315;164316;164317;164318;164319;164320;164321;164322;164323;164324;164325;164326;164327;164328 164318 19 MAEMIQADWAK Unmodified 1292.5893 0.58932885 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 35.091 33.576 2 1.5934E-05 16106 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.75 138.35 3191300000 1017600000 1046500000 887960000 1125100 1089700 969530 32920000 23950000 23920000 0 0 0 16118000 13230000 15662000 0 0 0 39530000 35890000 34826000 0 0 0 14204 1219 13847 267569;267570;267571;267572;267573;267574;267575;267576;267577;267578;267579;267580;267581;267582;267583;267584;267585 164329;164330;164331;164332;164333;164334;164335;164336;164337;164338;164339;164340;164341;164342;164343 164340 14 MAEMIQADWAK Oxidation (M) 1308.5842 0.58424348 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 29.053 27.993 2 0.00016315 13962 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.5 108.96 185500000 68858000 57674000 54746000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4224900 0 0 0 0 0 14205 1219 13847 267586;267587;267588;267589;267590;267591;267592;267593;267594;267595 164344;164345;164346;164347;164348;164349;164350;164351 164345 512;513 6 MAENPQQVLDFLTDLAK Unmodified 1931.9663 0.96626362 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.673 54.199 2;3 5.7501E-35 26607 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 207.97 193.1 1585600000 193970000 178090000 199990000 0 0 0 114990000 100350000 120420000 0 0 0 111810000 108090000 119600000 0 0 0 150210000 150740000 37331000 0 0 0 14206 1298 13848 267596;267597;267598;267599;267600;267601;267602;267603;267604;267605;267606;267607;267608;267609;267610;267611;267612;267613;267614;267615;267616;267617;267618;267619 164352;164353;164354;164355;164356;164357;164358;164359;164360;164361;164362;164363;164364;164365;164366;164367;164368;164369 164359 18 MAEQAGVK Unmodified 832.41129 0.41128813 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 10.639 11.586 1 0.0073255 2735 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.698 53.303 29200000 0 0 7939500 0 1099000 1229100 0 0 0 0 0 0 2972200 0 1938400 0 0 0 0 8339500 5682200 0 0 0 14207 252 13849 267620;267621;267622;267623;267624;267625;267626 164370 164370 1 MAEQQLYIHGGYTSATSGR Unmodified 2068.9636 0.96363785 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 23.314 22.81 3 2.4761E-16 9794 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.51 155.47 98537000 28845000 37913000 31779000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14208 1141 13850 267627;267628;267629 164371;164372 164371 2 MAERPEVQDALSAEGLK Unmodified 1842.9146 0.9145624 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 1 2 1 29.073 27.715 2;3 2.2526E-31 12665 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 244.36 228.97 2488100000 392960000 347030000 329410000 0 1043000 1064500 233990000 230950000 218050000 0 2681300 0 107500000 112010000 109280000 0 0 0 121570000 122770000 119730000 13036000 14127000 10881000 14209 510 13851 267630;267631;267632;267633;267634;267635;267636;267637;267638;267639;267640;267641;267642;267643;267644;267645;267646;267647;267648;267649;267650;267651;267652;267653;267654;267655;267656;267657;267658;267659;267660 164373;164374;164375;164376;164377;164378;164379;164380;164381;164382;164383;164384;164385;164386;164387;164388 164384 16 MAERPEVQDALSAEGLK Oxidation (M) 1858.9095 0.90947702 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 1 1 By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 27.127 25.91 3 0.024463 11879 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 41.323 39.253 61962000 9168800 12924000 7151600 0 0 0 10559000 8392100 7889200 0 0 0 0 5876400 0 0 0 0 0 0 0 0 0 0 14210 510 13851 267661;267662;267663;267664;267665;267666;267667 164389;164390 164390 313 1 MAFAEQGITELSK Unmodified 1423.7017 0.70171607 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.839 34.293 2 8.0454E-09 16452 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 164.43 159.1 1924500000 134280000 134670000 108580000 21658000 18433000 20176000 126120000 126170000 114730000 82272000 84874000 71790000 115370000 111840000 110100000 13208000 11083000 14629000 136460000 126270000 129500000 40142000 35986000 36179000 14211 502 13852 267668;267669;267670;267671;267672;267673;267674;267675;267676;267677;267678;267679;267680;267681;267682;267683;267684;267685;267686;267687;267688;267689;267690;267691 164391;164392;164393;164394;164395;164396;164397;164398;164399;164400;164401;164402;164403;164404;164405;164406;164407;164408;164409 164398 17 MAGDGVGEAK Unmodified 933.42258 0.4225811 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.561 11.976 2 7.6395E-05 3102 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.87 96.336 191420000 0 0 0 5093500 5835500 8187000 0 0 0 46557000 37807000 38667000 0 0 0 0 7101300 6601400 0 0 0 13404000 11428000 10739000 14212 122 13853 267692;267693;267694;267695;267696;267697;267698;267699;267700;267701;267702;267703;267704;267705;267706;267707;267708;267709;267710 164410;164411;164412;164413;164414;164415;164416;164417;164418;164419;164420;164421;164422 164413 13 MAGMAIDGK Unmodified 892.41466 0.41465895 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.343 18.72 2 0.0010908 5622 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 93.429 91.92 526110000 26783000 28759000 22637000 8953200 8506200 8057200 42901000 36112000 37687000 21120000 16419000 15296000 0 7396200 6320400 3135300 0 0 64676000 64585000 76278000 9973800 10432000 10083000 14213 930 13854 267711;267712;267713;267714;267715;267716;267717;267718;267719;267720;267721;267722;267723;267724;267725;267726;267727;267728;267729;267730;267731;267732;267733 164423;164424;164425;164426;164427;164428;164429;164430;164431;164432;164433;164434 164428 12 MAGQMGNER Unmodified 992.41678 0.41678422 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.221 11.815 2 4.4453E-08 2474 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 194.44 194.44 3597000000 496090000 475100000 490270000 22128000 24016000 24667000 0 123170000 122680000 37122000 34183000 34540000 222050000 203920000 192940000 26509000 35768000 32402000 337030000 289080000 254320000 36933000 41053000 41083000 14214 1621 13855 267734;267735;267736;267737;267738;267739;267740;267741;267742;267743;267744;267745;267746;267747;267748;267749;267750;267751;267752;267753;267754;267755;267756 164435;164436;164437;164438;164439;164440;164441;164442;164443;164444;164445;164446;164447;164448;164449;164450;164451 164437 4 MAGQMGNER Oxidation (M) 1008.4117 0.41169884 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 1 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 3 1 1 2 2 2 1 2 2 7.9712 8.7574 2 0.0048881 2373 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.165 76.773 157120000 32932000 35230000 13292000 0 0 0 4767000 5400500 4741300 5531200 0 0 3787000 12176000 6000200 0 0 0 8105100 7159300 18003000 0 0 0 14215 1621 13855 267757;267758;267759;267760;267761;267762;267763;267764;267765;267766;267767;267768;267769;267770;267771;267772;267773;267774;267775;267776;267777;267778 164452;164453;164454;164455;164456;164457;164458;164459;164460 164459 579 9 MAGTADIEIR Unmodified 1075.5332 0.53319418 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.355 23.347 2 1.0528E-06 10238 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.09 121.35 983950000 78371000 72349000 74529000 2199000 2267100 2512000 99925000 85269000 77255000 989120 955390 0 83196000 75957000 78796000 0 0 0 87956000 80711000 77655000 0 1709900 1344900 14216 1658 13856 267779;267780;267781;267782;267783;267784;267785;267786;267787;267788;267789;267790;267791;267792;267793;267794;267795;267796;267797 164461;164462;164463;164464;164465;164466;164467;164468;164469;164470;164471;164472;164473;164474;164475;164476;164477;164478;164479;164480;164481;164482;164483;164484 164467 24 MAHQHDR Unmodified 893.39262 0.39261838 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 1 2 2 2 4.2461 5.1344 2 0.0040595 853 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.39 79.564 370100000 20190000 16115000 15984000 226510 246050 251090 31897000 35089000 32430000 0 0 0 42709000 34091000 11375000 0 0 0 45072000 40820000 43607000 0 0 0 14217 585 13857 267798;267799;267800;267801;267802;267803;267804;267805;267806;267807;267808;267809;267810;267811;267812;267813;267814;267815;267816;267817 164485;164486;164487;164488;164489;164490;164491;164492;164493 164488 9 MAHQHDR Oxidation (M) 909.38753 0.387533 585 P0AAC0 uspE Universal stress protein E yes yes 0 1 0 By MS/MS By matching By matching 1 1 1 4.9024 5.635 2 0.079378 862 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.788 56.935 4297300 1700900 1449300 1147100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14218 585 13857 267818;267819;267820 164494 164494 1 MAICGSCGMMVNNVPK Unmodified 1767.7599 0.75985813 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.354 30.859 2 7.9142E-14 13878 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 173.71 167.87 292100000 3513500 4880100 3636200 0 0 0 32403000 28414000 31299000 15140000 12998000 16329000 33292000 28526000 27167000 0 3745400 0 10263000 14079000 11394000 5230000 4852800 4937500 14219 700 13858 267821;267822;267823;267824;267825;267826;267827;267828;267829;267830;267831;267832;267833;267834;267835;267836;267837;267838;267839 164495;164496;164497;164498;164499;164500;164501;164502;164503;164504;164505 164505 11 MAIGPVIDNGFYYDVDLDR Unmodified 2172.0198 0.019755749 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 33.389 33.063 2;3 2.0497E-10 25945 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.99 147.36 861610000 54388000 58993000 52899000 32223000 28548000 31484000 70331000 52015000 66745000 0 0 0 47711000 42924000 44552000 0 0 0 71231000 56511000 56962000 27568000 32336000 34192000 14220 445 13859 267840;267841;267842;267843;267844;267845;267846;267847;267848;267849;267850;267851;267852;267853;267854;267855;267856;267857;267858;267859;267860;267861;267862;267863;267864;267865;267866;267867;267868;267869 164506;164507;164508;164509;164510;164511;164512 164511 7 MAINWVESWEVVLADEEHK Unmodified 2284.0834 0.083418639 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 0 By MS/MS 1 54.667 53.217 3 0.0015558 21322 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 51.348 49.987 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14221 1754 13860 267870 164513 164513 1 MAIPEQPLEILR Unmodified 1408.7748 0.77482144 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 48.47 46.792 2 7.2898E-05 18658 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 101.65 89.599 119100000 0 0 0 0 0 0 34099000 34854000 36654000 4004900 0 4004100 0 0 5483500 0 0 0 0 0 0 0 0 0 14222 722 13861 267871;267872;267873;267874;267875;267876 164514 164514 1 MALAPCHAFFQFYVADGK Unmodified 2071.9648 0.96482383 407 P0A884 thyA Thymidylate synthase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.46 46.07 3 1.1415E-06 22275 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.882 93.31 200820000 20554000 15864000 15893000 0 0 0 13880000 14675000 11661000 0 0 0 14649000 13869000 16067000 0 0 0 21184000 20748000 21775000 0 0 0 14223 407 13862 267877;267878;267879;267880;267881;267882;267883;267884;267885;267886;267887;267888 164515;164516;164517;164518;164519;164520;164521;164522;164523 164520 9 MALELFK Unmodified 850.46226 0.46226107 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 2 1 1 2 2 2 2 2 2 2 2 1 1 38.857 37.416 1;2 0.013597 18520 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 83.614 62.754 673430000 34223000 29618000 32925000 0 0 0 0 21894000 25981000 1962600 2049100 22258000 23271000 19537000 23788000 98710000 69989000 73537000 46185000 40894000 41011000 32078000 2777800 30742000 14224 458 13863 267889;267890;267891;267892;267893;267894;267895;267896;267897;267898;267899;267900;267901;267902;267903;267904;267905;267906;267907;267908;267909;267910;267911;267912;267913;267914;267915;267916;267917;267918;267919;267920 164524;164525;164526;164527;164528;164529;164530;164531;164532;164533;164534;164535 164526 12 MALELFKPFIYGK Oxidation (M) 1571.8422 0.84217272 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 4 7 6 1 10 11 9 2 1 1 4 5 6 46.882 45.893 2;3 9.8853E-09 16384 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 162.36 152.87 1678200000 0 2767400 0 0 0 1135900 2205200 2360800 3179700 72133000 75157000 70897000 0 1736100 0 465550000 341660000 368550000 5537900 4159000 1282900 80949000 89955000 89007000 14225 458 13864 267921;267922;267923;267924;267925;267926;267927;267928;267929;267930;267931;267932;267933;267934;267935;267936;267937;267938;267939;267940;267941;267942;267943;267944;267945;267946;267947;267948;267949;267950;267951;267952;267953;267954;267955;267956;267957;267958;267959;267960;267961;267962;267963;267964;267965;267966;267967;267968;267969;267970;267971;267972;267973;267974;267975;267976;267977;267978;267979;267980;267981;267982;267983;267984;267985;267986;267987;267988;267989;267990;267991;267992 164536;164537;164538;164539;164540;164541;164542;164543;164544;164545;164546;164547;164548;164549;164550;164551;164552;164553;164554;164555;164556;164557;164558;164559;164560;164561;164562;164563;164564;164565;164566;164567;164568;164569;164570;164571;164572;164573;164574;164575;164576;164577;164578;164579;164580;164581;164582;164583;164584;164585;164586;164587;164588;164589;164590;164591;164592;164593;164594;164595;164596;164597;164598;164599;164600;164601 164537 236 66 MALELFKPFIYGK Unmodified 1555.8473 0.8472581 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 3 4 4 1 1 3 8 7 7 1 1 1 4 4 6 50.294 49.333 2;3 1.8057E-08 19355 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 177.44 160.53 42159000000 167030000 152180000 131310000 14566000 12701000 13304000 100550000 105060000 102920000 2176400000 1930200000 1983600000 118090000 117990000 126630000 8996400000 7829300000 8299400000 201240000 196720000 190570000 3348400000 3168800000 2675800000 14226 458 13864 267993;267994;267995;267996;267997;267998;267999;268000;268001;268002;268003;268004;268005;268006;268007;268008;268009;268010;268011;268012;268013;268014;268015;268016;268017;268018;268019;268020;268021;268022;268023;268024;268025;268026;268027;268028;268029;268030;268031;268032;268033;268034;268035;268036;268037;268038;268039;268040;268041;268042;268043;268044;268045;268046;268047;268048;268049;268050;268051;268052;268053;268054;268055;268056;268057;268058;268059 164602;164603;164604;164605;164606;164607;164608;164609;164610;164611;164612;164613;164614;164615;164616;164617;164618;164619;164620;164621;164622;164623;164624;164625;164626;164627;164628;164629;164630;164631;164632;164633;164634;164635;164636;164637;164638;164639;164640;164641;164642;164643;164644;164645;164646;164647;164648;164649;164650;164651;164652;164653;164654;164655;164656;164657;164658;164659;164660;164661;164662;164663;164664;164665;164666;164667;164668;164669;164670;164671;164672 164659 71 MALGGVR Unmodified 702.38468 0.38467945 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.255 16.845 2 0.0020458 5923 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.23 26.955 592790000 49620000 44275000 40745000 0 0 0 63940000 63868000 60625000 0 0 3733800 47389000 38782000 32742000 9647600 6596700 8820500 41332000 40545000 38068000 2065900 0 0 14227 536 13865 268060;268061;268062;268063;268064;268065;268066;268067;268068;268069;268070;268071;268072;268073;268074;268075;268076 164673;164674;164675;164676;164677;164678;164679;164680;164681;164682;164683;164684;164685 164677 13 MALGGVRDEAEIR Unmodified 1415.7191 0.71909747 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 2 2 2 2 1 1 1 2 1 21.746 21.631 2;3 2.0624E-07 7500 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 155.15 137.33 416510000 10919000 7786500 7915900 1421400 0 0 11895000 0 0 9225700 6135400 6184900 7479100 21529000 27372000 88345000 78726000 74772000 0 25681000 8834700 4546600 13601000 4144400 14228 536 13866 268077;268078;268079;268080;268081;268082;268083;268084;268085;268086;268087;268088;268089;268090;268091;268092;268093;268094;268095;268096;268097;268098;268099;268100;268101 164686;164687;164688;164689;164690;164691;164692;164693;164694;164695;164696;164697;164698;164699;164700;164701;164702;164703;164704;164705;164706;164707 164692 22 MALIPVK Unmodified 770.47243 0.47243183 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.133 27.826 2 0.0066314 13228 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.669 67.607 1891600000 129050000 144220000 118110000 37707000 30976000 32322000 106020000 111400000 113280000 7402000 7414500 8171900 113590000 126520000 120270000 5745300 3042300 3569900 147730000 159450000 138780000 76806000 75026000 74988000 14229 1628 13867 268102;268103;268104;268105;268106;268107;268108;268109;268110;268111;268112;268113;268114;268115;268116;268117;268118;268119;268120;268121;268122;268123;268124;268125 164708;164709;164710;164711;164712;164713;164714;164715;164716;164717;164718;164719;164720;164721;164722;164723;164724;164725;164726;164727;164728;164729 164713 22 MALIVDPMLATGGSVIATIDLLK Unmodified 2341.3001 0.3000767 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 55.857 54.41 3 1.1019E-06 26733 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 100.53 96.906 158800000 14928000 18414000 15268000 0 0 0 0 3070200 0 0 0 0 17878000 18289000 13802000 0 0 0 19020000 20434000 17694000 0 0 0 14230 424 13868 268126;268127;268128;268129;268130;268131;268132;268133;268134;268135 164730;164731;164732;164733;164734;164735;164736;164737 164732 8 MALIVDPMLATGGSVIATIDLLKK Unmodified 2469.395 0.39503971 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.309 53.874 3 5.4953E-10 19769 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 115.55 115.55 131170000 4200900 6186500 4716300 8987900 7510700 6920500 0 0 0 15520000 15513000 13803000 0 0 5161500 0 0 0 10314000 6698400 4923100 8081700 5646500 6983600 14231 424 13869 268136;268137;268138;268139;268140;268141;268142;268143;268144;268145;268146;268147;268148;268149;268150;268151 164738;164739;164740 164740 3 MALLEADVALPVVR Unmodified 1495.8432 0.84323535 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 2 1 1 1 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 1 2 2 51.445 50.352 2;3 1.6454E-11 19988 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 169.37 143.72 593610000 39571000 46481000 2538000 1226200 1422400 1076200 32616000 25174000 32460000 51886000 50162000 57544000 28656000 25958000 852970 15876000 9291200 10640000 51111000 51418000 49661000 2439400 2433400 3114700 14232 1009 13870 268152;268153;268154;268155;268156;268157;268158;268159;268160;268161;268162;268163;268164;268165;268166;268167;268168;268169;268170;268171;268172;268173;268174;268175;268176;268177;268178;268179;268180;268181;268182;268183;268184;268185;268186;268187;268188;268189;268190 164741;164742;164743;164744;164745;164746;164747;164748;164749;164750 164747 8 MALNEAHLVQTK Unmodified 1353.7075 0.70747015 1743 P69791 chbA N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 20.221 20.56 2 1.6211E-06 7647 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 158.05 149.83 32461000 0 0 0 0 0 0 2213800 3778600 3008200 0 0 0 7034700 7106400 6192700 0 0 0 3126300 0 0 0 0 0 14233 1743 13871 268191;268192;268193;268194;268195;268196;268197 164751;164752;164753 164752 3 MALTQHLTPSR Unmodified 1253.655 0.65504065 1832 P76194 sufE Cysteine desulfuration protein SufE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 17.722 18.423 2;3 0.0001186 6435 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 116.3 104.81 210670000 13676000 18043000 19500000 0 0 0 23274000 25831000 25933000 0 0 0 14745000 13499000 12726000 0 0 0 14515000 14755000 14175000 0 0 0 14234 1832 13872 268198;268199;268200;268201;268202;268203;268204;268205;268206;268207;268208;268209;268210;268211;268212;268213;268214;268215;268216;268217;268218 164754;164755;164756;164757 164757 1 MALWGGR Unmodified 789.39558 0.39557849 1069 P11447 argH Argininosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.188 24.158 2 0.010894 11080 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.344 86.344 437080000 30405000 28805000 26740000 0 0 0 43195000 46224000 37716000 0 0 0 39478000 36624000 31044000 0 0 0 36603000 39855000 40396000 0 0 0 14235 1069 13873 268219;268220;268221;268222;268223;268224;268225;268226;268227;268228;268229;268230 164758;164759;164760;164761;164762;164763;164764;164765;164766;164767;164768 164759 10 MAMHGVDTPIDYLNSHGTSTPVGDVK Oxidation (M) 2757.2738 0.27381496 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 3 3 3 3 3 2 2 3 2 2 3 2 34.095 32.648 3;4 1.933E-10 15662 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.08 113.65 386500000 81464000 43215000 45439000 0 0 0 39941000 29250000 17167000 0 0 0 18280000 26710000 8941900 0 0 0 18260000 37145000 20688000 0 0 0 14236 489 13874 268231;268232;268233;268234;268235;268236;268237;268238;268239;268240;268241;268242;268243;268244;268245;268246;268247;268248;268249;268250;268251;268252;268253;268254;268255;268256;268257;268258;268259;268260;268261 164769;164770;164771;164772;164773;164774;164775 164775 288;289 6 MAMHGVDTPIDYLNSHGTSTPVGDVK Unmodified 2741.2789 0.27890034 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 1 3 2 3 3 3 3 2 3 3 36.489 34.937 2;3;4 3.3354E-31 16685 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 197.86 197.79 10920000000 1711700000 1455800000 1545100000 4628000 3742700 1280500 567930000 531770000 551320000 0 0 0 777890000 801770000 792620000 0 0 0 732760000 706650000 735430000 0 0 0 14237 489 13874 268262;268263;268264;268265;268266;268267;268268;268269;268270;268271;268272;268273;268274;268275;268276;268277;268278;268279;268280;268281;268282;268283;268284;268285;268286;268287;268288;268289;268290;268291;268292;268293;268294;268295;268296;268297;268298;268299;268300 164776;164777;164778;164779;164780;164781;164782;164783;164784;164785;164786;164787;164788;164789;164790;164791;164792;164793;164794;164795;164796;164797;164798;164799;164800;164801 164791 26 MANQANIPVITLDR Unmodified 1554.8188 0.81881152 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 39.171 37.489 2;3 2.0998E-14 17497 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 233.13 227.29 6750300000 660420000 642760000 647820000 1441300 1696800 1314500 480130000 461950000 486200000 0 0 0 602730000 581840000 561600000 0 0 0 537400000 534390000 548610000 0 0 0 14238 72 13875 268301;268302;268303;268304;268305;268306;268307;268308;268309;268310;268311;268312;268313;268314;268315;268316;268317;268318;268319;268320;268321;268322;268323;268324;268325;268326;268327;268328 164802;164803;164804;164805;164806;164807;164808;164809;164810;164811;164812;164813;164814;164815;164816;164817;164818;164819;164820;164821;164822;164823;164824;164825 164820 24 MANQANIPVITLDR Oxidation (M) 1570.8137 0.81372614 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 1 0 By MS/MS By MS/MS 1 1 36.995 35.54 2 4.5529E-12 16474 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 179.6 173.07 60681000 0 0 27264000 0 0 0 0 0 0 0 0 0 33418000 0 0 0 0 0 0 0 0 0 0 0 14239 72 13875 268329;268330 164826;164827 164827 32 1 MANVEIYTK Unmodified 1067.5321 0.53213155 704 P0AC62 grxC Glutaredoxin-3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.192 22.16 2 4.5977E-05 9108 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 150.05 131.27 409630000 48632000 0 36932000 0 0 0 23904000 19524000 21380000 0 0 0 42720000 35349000 36721000 0 0 0 50611000 47897000 45960000 0 0 0 14240 704 13876 268331;268332;268333;268334;268335;268336;268337;268338;268339;268340;268341;268342 164828;164829;164830;164831;164832;164833;164834;164835;164836;164837;164838 164832 11 MAPALAAGNCVVLKPAR Unmodified 1737.9382 0.93821515 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 1 1 1 1 28.086 26.741 2;3 5.1259E-24 12001 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 270.72 257.71 1796800000 567630000 479450000 431730000 0 785930 0 95197000 92524000 91071000 1894500 1446700 2910800 6577500 7056200 5284700 0 0 0 0 0 13229000 0 0 0 14241 1486 13877 268343;268344;268345;268346;268347;268348;268349;268350;268351;268352;268353;268354;268355;268356;268357;268358;268359;268360;268361;268362 164839;164840;164841;164842;164843;164844;164845;164846 164846 8 MAPALLTGNTIVIK Unmodified 1440.8374 0.83742169 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 1 1 1 2 1 42.83 41.27 2;3 7.8472E-06 20038 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.22 135.49 372260000 94964000 85324000 78791000 0 0 0 11214000 10054000 10013000 0 0 0 6808800 8092700 9391000 0 0 0 19054000 22605000 15950000 0 0 0 14242 1264 13878 268363;268364;268365;268366;268367;268368;268369;268370;268371;268372;268373;268374;268375;268376;268377;268378 164847;164848;164849;164850;164851;164852;164853;164854;164855;164856 164853 9 MAPALLTGNTIVIK Oxidation (M) 1456.8323 0.83233632 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 1 0 By MS/MS By matching 1 1 38.697 38.074 2 0.05998 18445 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 40.883 36.585 5431500 0 0 3126800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2304700 0 0 0 0 0 0 14243 1264 13878 268379;268380 164857 164857 523 0 MAPALLTGNTIVIKPSEFTPNNAIAFAK Unmodified 2928.5783 0.57830047 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 1 1 2 3 2 2 3 3 3 51.535 50.312 2;3;4 2.1762E-30 24391 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 246.27 242.49 3898400000 862790000 903990000 894390000 2867900 2477000 2061600 95043000 108930000 108580000 0 0 0 124360000 105510000 75800000 0 0 0 182670000 194790000 234190000 0 0 0 14244 1264 13879 268381;268382;268383;268384;268385;268386;268387;268388;268389;268390;268391;268392;268393;268394;268395;268396;268397;268398;268399;268400;268401;268402;268403;268404;268405;268406;268407;268408;268409;268410;268411;268412 164858;164859;164860;164861;164862;164863;164864;164865;164866;164867;164868;164869;164870;164871;164872;164873;164874;164875;164876;164877;164878;164879 164874 22 MAPALLTGNTIVIKPSEFTPNNAIAFAK Oxidation (M) 2944.5732 0.57321509 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 50.585 49.242 3 0.0017025 24332 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.963 47.411 99842000 22772000 23181000 23345000 0 0 0 0 5818600 0 0 0 0 2670700 2359500 3517000 0 0 0 5466800 4770000 5940600 0 0 0 14245 1264 13879 268413;268414;268415;268416;268417;268418;268419;268420;268421;268422 164880;164881;164882 164880 523 1 MAPHIAFPMR Unmodified 1169.5838 0.58378997 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 28.626 27.273 2;3 4.2728E-05 10728 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 139.28 122.5 1443100000 0 0 0 2749300 2297300 3598200 118790000 150020000 115290000 175260000 165350000 204430000 42808000 48770000 49011000 28815000 22954000 27050000 54764000 51991000 51873000 40297000 47522000 39450000 14246 1088 13880 268423;268424;268425;268426;268427;268428;268429;268430;268431;268432;268433;268434;268435;268436;268437;268438;268439;268440;268441;268442;268443;268444;268445;268446;268447;268448;268449;268450;268451;268452;268453 164883;164884;164885;164886;164887;164888;164889;164890;164891;164892;164893;164894;164895;164896;164897;164898;164899;164900;164901;164902;164903;164904;164905;164906;164907;164908 164888 26 MAPHIAFPMR Oxidation (M) 1185.5787 0.57870459 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 1 3 3 2 1 1 1 2 1 2 2 2 25.705 24.336 2;3 0.00087416 9635 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 89.142 89.142 137890000 0 0 0 0 0 0 21055000 15569000 9967600 27565000 19000000 13735000 2474300 2134900 2489400 0 0 0 6015600 4825500 8917000 2018600 2127300 0 14247 1088 13880 268454;268455;268456;268457;268458;268459;268460;268461;268462;268463;268464;268465;268466;268467;268468;268469;268470;268471;268472;268473;268474;268475;268476;268477;268478 164909;164910;164911;164912;164913;164914;164915;164916;164917;164918;164919 164912 486;487 9 MAPLVHALAK Unmodified 1049.6056 0.60557126 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 20.256 20.617 3 0.12265 8503 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 33.19 20.954 244260000 18474000 15503000 0 0 0 0 23370000 21237000 22078000 0 0 0 23865000 27130000 0 0 0 0 26136000 34361000 32107000 0 0 0 14248 1306 13881 268479;268480;268481;268482;268483;268484;268485;268486;268487;268488 164920;164921 164920 0 MAPPQISAEVLK Unmodified 1282.6955 0.69550848 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 1 1 1 34.857 33.345 2;3 7.555E-05 13318 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 121.73 112.87 10296000000 965760000 995400000 835890000 10680000 9477700 10664000 888760000 806510000 849120000 65123000 57253000 54089000 674480000 662080000 636390000 6783000 3651200 5219600 878880000 928860000 895280000 16877000 19478000 18947000 14249 293 13882 268489;268490;268491;268492;268493;268494;268495;268496;268497;268498;268499;268500;268501;268502;268503;268504;268505;268506;268507;268508;268509;268510;268511;268512;268513;268514;268515;268516;268517;268518;268519;268520;268521;268522;268523;268524;268525;268526 164922;164923;164924;164925;164926;164927;164928;164929;164930;164931;164932;164933;164934;164935;164936;164937;164938;164939;164940;164941;164942;164943;164944;164945;164946;164947;164948;164949;164950;164951;164952;164953;164954 164925 33 MAPPQISAEVLKK Unmodified 1410.7905 0.7904715 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 27.128 25.967 2;3 2.7515E-05 12165 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.629 87.136 4496400000 292000000 296120000 252610000 52847000 49888000 76591000 246210000 236480000 219490000 297120000 326810000 285620000 205430000 171980000 180980000 35765000 21766000 27557000 298800000 294620000 304680000 116710000 116030000 90335000 14250 293 13883 268527;268528;268529;268530;268531;268532;268533;268534;268535;268536;268537;268538;268539;268540;268541;268542;268543;268544;268545;268546;268547;268548;268549;268550;268551;268552;268553;268554;268555;268556;268557;268558;268559;268560;268561;268562;268563;268564;268565;268566;268567;268568;268569;268570;268571 164955;164956;164957;164958;164959;164960;164961;164962;164963;164964;164965;164966;164967;164968;164969;164970;164971;164972;164973;164974;164975;164976;164977;164978;164979;164980;164981;164982;164983;164984;164985;164986;164987 164963 33 MAPPQISAEVLKK Oxidation (M) 1426.7854 0.78538612 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 1 1 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 3 1 1 1 1 1 1 1 1 26.427 25.163 3 0.00046098 9611 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 68.809 66.248 80414000 0 0 1725500 2765000 556080 3553000 2919300 3548900 0 16803000 12161000 15364000 2314600 1940000 0 1251200 1012700 0 0 3764900 0 3110900 4739100 2884500 14251 293 13883 268572;268573;268574;268575;268576;268577;268578;268579;268580;268581;268582;268583;268584;268585;268586;268587;268588;268589;268590;268591;268592 164988;164989;164990;164991;164992 164990 136 5 MAPVIQR Unmodified 813.45309 0.45309337 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.651 16.173 2 0.0016613 4444 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 126.05 122.19 1050500000 46047000 64023000 68378000 11840000 9633900 12010000 84417000 85593000 0 36700000 36441000 34479000 0 66046000 68336000 6784500 4697800 5412400 120780000 109030000 115150000 22114000 21220000 21358000 14252 927 13884 268593;268594;268595;268596;268597;268598;268599;268600;268601;268602;268603;268604;268605;268606;268607;268608;268609;268610;268611;268612;268613;268614;268615;268616 164993;164994;164995;164996;164997;164998;164999;165000;165001;165002;165003;165004;165005;165006;165007;165008;165009;165010;165011;165012 164993 19 MAQEIELK Acetyl (Protein N-term);Oxidation (M) 1018.5005 0.50049707 1354 P30871 ygiF Inorganic triphosphatase yes yes 1 1 0 By MS/MS 1 24.48 23.674 2 0.056452 10409 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 48.561 21.307 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14253 1354 13885 268617 165013 165013 1 MAQENPGVDVPVYGVPINTR Unmodified 2155.0732 0.073188303 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 42.161 40.323 2;3 2.5954E-15 19707 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.17 148.45 63766000 17308000 12153000 18036000 0 0 0 0 0 0 1132500 1861600 1085500 2535400 0 2145400 0 0 0 0 0 4814200 1531600 1162300 0 14254 1213 13886 268618;268619;268620;268621;268622;268623;268624;268625;268626;268627;268628;268629;268630;268631 165014;165015 165014 1 MAQILDTTPQPAQNIAPSAVIDATAK Unmodified 2664.3793 0.37926631 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 2 2 2 2 1 1 2 1 2 1 2 2 2 2 1 1 46.509 44.92 2;3 2.0581E-30 22331 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 239.18 234.61 1015600000 91190000 28242000 18148000 3400300 3179400 3411000 96003000 87826000 79379000 16115000 10102000 8254300 94689000 16694000 78486000 0 7833600 0 126170000 111760000 107090000 9223700 7993200 10402000 14255 1185 13887 268632;268633;268634;268635;268636;268637;268638;268639;268640;268641;268642;268643;268644;268645;268646;268647;268648;268649;268650;268651;268652;268653;268654;268655;268656;268657;268658;268659;268660;268661;268662;268663;268664 165016;165017;165018;165019;165020;165021;165022;165023;165024;165025;165026;165027;165028;165029;165030;165031;165032;165033;165034 165020 19 MAQLNSQNGVWSCTFVGYCSEVCPK Unmodified 2921.2605 0.26048986 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 0 By MS/MS By matching 1 1 47.252 45.229 3 0.14085 18172 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 22.096 22.043 11800000 0 0 0 0 0 0 0 0 0 0 5836400 5963400 0 0 0 0 0 0 0 0 0 0 0 0 14256 700 13888 268665;268666 165035 165035 1 MAQLVTELVPTMDMVR Unmodified 1832.9198 0.91984747 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 53.434 52.228 2;3 2.1772E-24 25387 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 221.8 205.86 1928500000 145170000 143940000 133950000 6160000 0 3807100 138270000 127410000 152970000 22285000 24351000 22038000 131800000 132150000 150050000 13180000 9687000 11532000 214680000 179270000 157150000 4264900 4382000 0 14257 1227 13889 268667;268668;268669;268670;268671;268672;268673;268674;268675;268676;268677;268678;268679;268680;268681;268682;268683;268684;268685;268686;268687;268688;268689;268690;268691;268692;268693;268694;268695;268696;268697;268698;268699;268700;268701;268702;268703;268704;268705;268706 165036;165037;165038;165039;165040;165041;165042;165043;165044;165045;165046;165047;165048;165049;165050;165051;165052;165053;165054;165055;165056;165057;165058;165059;165060;165061;165062;165063;165064;165065 165059 30 MAQQQGVAVK Unmodified 1058.5543 0.55426398 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.756 12.584 2 4.2653E-05 3414 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.31 120.53 2066700000 118050000 124700000 0 0 1084500 987880 121130000 147610000 134700000 619150 0 0 242010000 244460000 218650000 0 0 0 216070000 234760000 261930000 0 0 0 14258 1283 13890 268707;268708;268709;268710;268711;268712;268713;268714;268715;268716;268717;268718;268719;268720 165066;165067;165068;165069;165070;165071;165072;165073;165074;165075 165067 8 MAQQSPYSAAMAEQR Unmodified 1667.7396 0.73957492 406 P0A881 trpR Trp operon repressor yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.225 13.079 4 0.16606 3719 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 5.9041 1.1028 144150000 0 7282800 0 0 0 0 20406000 20607000 13923000 0 0 0 31742000 10511000 17285000 0 0 0 11922000 0 10476000 0 0 0 14259 406 13891 268721;268722;268723;268724;268725;268726;268727;268728;268729 165076 165076 1 MAQVSAETINPAHPGSK Unmodified 1736.8516 0.85156821 110 P05458 ptrA Protease 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.662 19.227 3 1.2678E-06 7261 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.153 88.372 194910000 16696000 16129000 12320000 0 0 0 18212000 15155000 16005000 0 0 0 13815000 11798000 13058000 0 0 0 21441000 20064000 20215000 0 0 0 14260 110 13892 268730;268731;268732;268733;268734;268735;268736;268737;268738;268739;268740;268741 165077;165078;165079;165080;165081;165082;165083;165084;165085;165086;165087 165080 11 MAQVVDK Unmodified 789.40547 0.40547447 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 11.771 12.47 2 0.0030082 3337 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.69 50.654 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14261 1305 13893 268742;268743;268744 165088;165089;165090 165090 3 MASGEPLNDDDR Unmodified 1318.5459 0.54594371 1589 P46859 gntK Thermoresistant gluconokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.58 15.368 2 4.1124E-08 5079 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.79 157.79 82515000 0 0 0 0 0 0 8702600 8920700 9284200 0 0 0 8399500 9519400 8317200 0 0 0 9506900 10421000 9442800 0 0 0 14262 1589 13894 268745;268746;268747;268748;268749;268750;268751;268752;268753 165091;165092;165093;165094;165095;165096 165093 5 MASGEPLNDDDRKPWLQALNDAAFAMQR Unmodified 3159.4866 0.4866017 1589 P46859 gntK Thermoresistant gluconokinase yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 49.435 48.165 3;4 1.8843E-18 23783 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.18 144.43 394130000 0 6526600 5322800 0 0 2579200 33143000 39730000 36665000 0 0 0 48480000 39603000 39486000 0 0 3729800 50172000 43784000 44913000 0 0 0 14263 1589 13895 268754;268755;268756;268757;268758;268759;268760;268761;268762;268763;268764;268765;268766;268767 165097;165098;165099;165100;165101;165102;165103;165104;165105;165106 165100 10 MASPGQEDR Unmodified 989.42364 0.42364373 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.816 11.632 2 1.1629E-05 2832 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.53 157.62 692280000 66223000 55327000 63396000 0 0 0 68684000 73201000 68136000 0 0 0 58693000 44763000 44920000 0 0 0 57261000 44669000 47006000 0 0 0 14264 1364 13896 268768;268769;268770;268771;268772;268773;268774;268775;268776;268777;268778;268779 165107;165108;165109;165110;165111;165112;165113;165114;165115;165116;165117;165118 165107 12 MASVSSGMQLPPGFK Unmodified 1535.7476 0.74762041 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 1 2 2 1 2 37.71 36.105 2;3 1.9745E-08 12324 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 138.71 136.68 172120000 0 0 0 0 0 329390 0 0 3009700 36824000 24523000 26230000 3313400 0 0 29517000 12030000 14656000 0 0 0 8400800 5496900 7791000 14265 416 13897 268780;268781;268782;268783;268784;268785;268786;268787;268788;268789;268790;268791;268792;268793;268794;268795;268796;268797;268798;268799 165119;165120;165121;165122;165123;165124;165125;165126;165127;165128;165129;165130;165131;165132;165133;165134;165135;165136;165137;165138;165139;165140 165123 22 MASVSSGMQLPPGFK Oxidation (M) 1551.7425 0.74253503 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1 1 35.605 33.351 2 0.0002302 12963 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 81.017 74.913 33916000 0 0 0 0 0 0 0 0 0 9521700 7906700 4275500 0 0 0 0 0 0 2572600 3707300 0 3321600 2610400 0 14266 416 13897 268800;268801;268802;268803;268804;268805;268806;268807;268808 165141;165142;165143;165144;165145 165143 199 5 MATLNFNATGGDGYPR Unmodified 1683.7675 0.76750423 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.018 33.562 2 2.1527E-13 15466 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 198.57 195.84 319980000 39081000 25568000 29436000 0 0 0 35859000 31636000 34362000 0 0 0 17545000 15658000 17744000 0 0 0 24919000 26117000 22058000 0 0 0 14267 154 13898 268809;268810;268811;268812;268813;268814;268815;268816;268817;268818;268819;268820 165146;165147;165148;165149;165150;165151;165152;165153;165154;165155;165156;165157 165155 12 MATRIEFHK Unmodified 1131.5859 0.58589846 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.903 35.145 2 0.12751 17305 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 47.067 17.729 5088900000 82600000 82676000 70183000 0 0 0 587370000 643410000 651160000 0 1032800 0 553510000 480420000 463280000 0 0 0 554430000 486380000 430850000 553120 1045800 0 14268 1316 13899 268821;268822;268823;268824;268825;268826;268827;268828;268829;268830;268831;268832;268833;268834;268835 165158;165159 165158 2 MATYYSNDFR Unmodified 1266.5339 0.53392246 265 P0A6N4 efp Elongation factor P yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.443 16.138 2 0.061856 5181 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 45.718 45.718 152560000 13652000 15220000 14199000 598110 387150 0 12997000 11327000 12162000 1147000 744570 849710 12040000 8931900 11217000 0 0 0 12651000 12378000 12064000 0 0 0 14269 265 13900 268836;268837;268838;268839;268840;268841;268842;268843;268844;268845;268846;268847;268848;268849;268850;268851;268852 165160 165160 1 MAVAESGMGIVEDK Unmodified 1435.6687 0.66870139 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 3 2 4 2 2 2 2 2 1 1 1 1 2 2 2 3 30.299 28.849 2;3 5.5335E-17 10601 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 192.3 184.37 3433100000 403480000 23841000 408650000 122800000 102490000 94355000 422530000 421340000 433160000 107500000 8177600 88753000 215230000 186900000 136410000 6202000 4107800 4031400 9626200 8299500 9285900 105400000 104950000 5584000 14270 548 13901 268853;268854;268855;268856;268857;268858;268859;268860;268861;268862;268863;268864;268865;268866;268867;268868;268869;268870;268871;268872;268873;268874;268875;268876;268877;268878;268879;268880;268881;268882;268883;268884;268885;268886;268887;268888;268889;268890;268891;268892;268893;268894;268895;268896;268897;268898;268899;268900 165161;165162;165163;165164;165165;165166;165167;165168;165169;165170;165171;165172;165173;165174;165175;165176;165177;165178;165179;165180;165181;165182;165183;165184;165185;165186;165187;165188;165189;165190;165191;165192;165193;165194;165195;165196;165197;165198;165199;165200;165201;165202;165203;165204;165205;165206;165207;165208;165209;165210;165211 165187 51 MAVAESGMGIVEDK Oxidation (M) 1451.6636 0.66361601 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1 2 2 3 1 23.715 22.871 2 4.0254E-06 11195 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.02 117.26 70900000 8425900 2024100 0 3856700 4518800 2928200 17128000 12323000 18452000 1243200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14271 548 13901 268901;268902;268903;268904;268905;268906;268907;268908;268909;268910;268911;268912;268913;268914;268915;268916 165212;165213;165214;165215;165216;165217;165218;165219;165220 165212 335;336 7 MAVHPDDPPRPILGLPR Unmodified 1880.0091 0.0090719039 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 29.745 28.389 3;4 4.7386E-07 13537 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 106.52 101.91 1626300000 237820000 230840000 206890000 0 0 0 134260000 121870000 111980000 0 0 0 99302000 115580000 97704000 0 0 0 92596000 85020000 92470000 0 0 0 14272 1244 13902 268917;268918;268919;268920;268921;268922;268923;268924;268925;268926;268927;268928;268929;268930;268931;268932;268933;268934;268935;268936;268937;268938;268939;268940 165221;165222;165223;165224;165225;165226;165227;165228;165229;165230;165231;165232;165233;165234;165235;165236;165237 165223 17 MAVMPEEELWK Unmodified 1361.6359 0.63594469 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.813 40.17 2 0.00010878 14920 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 118.18 117.87 619250000 0 0 0 685630 742860 0 5322600 5054900 5262000 2640900 2761900 3308700 134530000 137530000 146280000 27377000 16599000 13021000 28850000 31754000 32504000 8067000 8219100 8740700 14273 647 13903 268941;268942;268943;268944;268945;268946;268947;268948;268949;268950;268951;268952;268953;268954;268955;268956;268957;268958;268959;268960 165238;165239;165240;165241;165242;165243;165244;165245 165238 7 MAWLATQENGEQVEHEETPYPLVDDLER Unmodified 3298.5088 0.50883651 825 P0AE01 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 48.717 47.41 3 5.2678E-32 22304 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 201.16 200.39 176850000 13389000 12188000 10463000 0 0 0 13389000 10897000 0 0 0 0 18086000 15294000 19521000 0 0 0 22680000 21298000 19643000 0 0 0 14274 825 13904 268961;268962;268963;268964;268965;268966;268967;268968;268969;268970;268971 165246;165247;165248;165249;165250;165251 165249 6 MAWLAVVVSHK Unmodified 1239.6798 0.67979884 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 1 1 1 1 2 38.41 36.778 2;3 0.00065274 18239 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 79.659 79.576 194450000 15214000 12021000 13289000 0 0 0 27488000 31399000 25344000 0 0 0 10774000 11750000 9040000 4188600 0 0 12421000 12278000 9243600 0 0 0 14275 709 13905 268972;268973;268974;268975;268976;268977;268978;268979;268980;268981;268982;268983;268984;268985;268986;268987;268988;268989;268990 165252;165253;165254;165255;165256;165257;165258;165259;165260 165255 9 MAYAMDFINK Unmodified 1202.5464 0.54640141 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.264 36.65 2 0.00058416 14265 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 93.551 88.767 136100000 4654500 6440300 5267800 2573900 1668900 2348700 6416700 7646700 8358000 3864200 4065600 4218500 8881300 10088000 10500000 1880500 1374600 1377800 10157000 12185000 11093000 4472200 3119100 3451700 14276 1631 13906 268991;268992;268993;268994;268995;268996;268997;268998;268999;269000;269001;269002;269003;269004;269005;269006;269007;269008;269009;269010;269011;269012;269013;269014 165261;165262;165263;165264;165265;165266 165264 6 MCAPLGSR Unmodified 890.41024 0.41024228 737 P0ACN4 allR HTH-type transcriptional repressor AllR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.52 16.067 2 0.0079998 5390 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.262 91.278 128240000 27429000 24239000 22524000 507680 527010 567800 5809300 4813400 0 1535200 1045500 876620 3799800 3817500 3390100 8307800 4784000 5307100 0 4179900 3606600 0 548290 620160 14277 737 13907 269015;269016;269017;269018;269019;269020;269021;269022;269023;269024;269025;269026;269027;269028;269029;269030;269031;269032;269033;269034;269035 165267;165268;165269;165270 165270 1 MCDTIHPQIHDSDR Unmodified 1723.7406 0.74063755 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 2 2 2 1 1 1 2 2 2 1 2 13.307 14.176 2;3 8.6337E-06 4413 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 108.67 104.65 191300000 14544000 16795000 15375000 0 0 0 15874000 3661800 13321000 0 0 0 16960000 16755000 18422000 0 0 0 18068000 16113000 25410000 0 0 0 14278 1548 13908 269036;269037;269038;269039;269040;269041;269042;269043;269044;269045;269046;269047;269048;269049;269050;269051;269052;269053;269054 165271;165272 165271 2 MCGLVMLLPHGYEGQGPEHSSAR Unmodified 2525.1614 0.16136816 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 36.658 34.92 3;4 9.2382E-22 16783 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.74 159.54 3815600000 399260000 386200000 338180000 7087700 7696100 7065300 129360000 136120000 143380000 6617200 7684900 7159600 243520000 245930000 241110000 0 0 0 526210000 503340000 409120000 20050000 24432000 26124000 14279 937 13909 269055;269056;269057;269058;269059;269060;269061;269062;269063;269064;269065;269066;269067;269068;269069;269070;269071;269072;269073;269074;269075;269076;269077;269078;269079;269080;269081;269082;269083;269084;269085;269086;269087;269088;269089;269090;269091;269092;269093;269094 165273;165274;165275;165276;165277;165278;165279;165280;165281;165282;165283;165284;165285;165286;165287;165288;165289;165290;165291;165292;165293;165294;165295;165296;165297;165298;165299;165300;165301;165302;165303 165284 31 MCITGCPYK Unmodified 1128.4766 0.47660728 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.477 20.685 2 0.0019717 8157 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.794 84.114 437390000 9202000 10641000 11798000 724900 529120 399140 0 25160000 32169000 4185500 2959600 4104400 47596000 41283000 39824000 0 0 538900 54010000 61145000 58320000 12374000 9703300 10726000 14280 1067 13910 269095;269096;269097;269098;269099;269100;269101;269102;269103;269104;269105;269106;269107;269108;269109;269110;269111;269112;269113;269114;269115 165304;165305;165306;165307;165308 165305 5 MCITGCPYKK Unmodified 1256.5716 0.5715703 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 1 1 1 1 1 2 2 2 2 14.573 15.05 2;3 0.0054557 3941 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 71.692 67.393 133820000 0 0 0 1966300 3926800 4807600 0 0 0 11996000 8655800 6668200 1330300 1485100 0 3830100 3740200 2766600 2711600 3178200 0 28330000 23613000 24813000 14281 1067 13911 269116;269117;269118;269119;269120;269121;269122;269123;269124;269125;269126;269127;269128;269129;269130;269131;269132;269133;269134;269135;269136;269137;269138;269139;269140 165309;165310;165311;165312;165313;165314;165315;165316;165317 165314 9 MCSSPETGLSLETAAK Unmodified 1680.7699 0.76987199 1175 P21338 rna Ribonuclease I yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 28.386 27.245 2 3.2407E-08 12571 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.87 116.39 71707000 17528000 14128000 13395000 0 0 0 0 0 4065500 0 0 0 3781500 2433400 3346600 0 0 0 3522500 5250200 4255600 0 0 0 14282 1175 13912 269141;269142;269143;269144;269145;269146;269147;269148;269149;269150 165318 165318 1 MCVAGLNTANVQR Unmodified 1432.6915 0.69150251 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.545 25.482 2 1.2645E-13 10962 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 202.36 188.15 560290000 58218000 51226000 47405000 0 466810 0 46244000 57504000 47918000 0 0 0 32447000 36605000 37097000 0 0 0 43769000 52623000 48772000 0 0 0 14283 91 13913 269151;269152;269153;269154;269155;269156;269157;269158;269159;269160;269161;269162;269163 165319;165320;165321;165322;165323;165324;165325;165326;165327;165328 165328 10 MDAAQLTEEGYYSVFGK Unmodified 1907.8611 0.86112984 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 1 2 1 51.818 50.572 2;3 5.7006E-31 25006 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 230.14 229.15 4900200000 673890000 745180000 613110000 6424600 6857100 6345500 247360000 197110000 201960000 1855600 0 2672400 295630000 258550000 236060000 0 0 1641600 446200000 481200000 469070000 2585900 5198700 1302600 14284 1444 13914 269164;269165;269166;269167;269168;269169;269170;269171;269172;269173;269174;269175;269176;269177;269178;269179;269180;269181;269182;269183;269184;269185;269186;269187;269188;269189;269190;269191;269192;269193;269194;269195;269196;269197;269198;269199;269200 165329;165330;165331;165332;165333;165334;165335;165336;165337;165338;165339;165340;165341;165342;165343;165344;165345;165346;165347;165348;165349;165350;165351;165352;165353;165354;165355 165329 27 MDALELLINR Unmodified 1186.638 0.63799361 756 P0ACY1 ydjA Putative NAD(P)H nitroreductase YdjA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.801 50.554 2 2.1962E-09 24671 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 198.65 185.07 1572700000 124740000 132240000 146420000 0 0 0 189310000 158000000 164560000 0 0 0 102710000 92994000 102010000 0 0 0 127010000 115160000 117590000 0 0 0 14285 756 13915 269201;269202;269203;269204;269205;269206;269207;269208;269209;269210;269211;269212 165356;165357;165358;165359;165360;165361;165362;165363;165364;165365;165366;165367 165363 12 MDAWLSGPNANK Unmodified 1302.6027 0.60267073 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.51 27.262 2 2.7016E-08 12419 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 166.19 166.19 1112800000 321690000 298650000 269050000 0 0 0 20328000 22226000 21525000 0 0 0 24994000 18096000 18932000 0 0 0 34851000 29321000 33111000 0 0 0 14286 852 13916 269213;269214;269215;269216;269217;269218;269219;269220;269221;269222;269223;269224 165368;165369;165370;165371;165372;165373;165374;165375;165376;165377;165378 165374 11 MDAWLSGPNANK Oxidation (M) 1318.5976 0.59758535 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 24.2 23.496 2 0.0048532 10210 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 63.283 63.283 16913000 6459000 5460700 4992800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14287 852 13916 269225;269226;269227 165379;165380;165381 165380 395 0 MDCSSECAMAGLLALR Unmodified 1783.7725 0.77253131 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.314 48.908 2;3 2.414E-18 24282 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 234.65 234.65 884770000 99389000 75491000 76111000 0 0 0 68124000 69002000 71085000 0 0 0 61810000 69665000 68579000 0 0 0 71841000 77761000 75913000 0 0 0 14288 1450 13917 269228;269229;269230;269231;269232;269233;269234;269235;269236;269237;269238;269239;269240;269241;269242;269243;269244;269245;269246;269247;269248;269249;269250;269251 165382;165383;165384;165385;165386;165387;165388;165389;165390;165391;165392;165393;165394;165395;165396;165397;165398;165399;165400;165401 165382 20 MDDLLQGFVAQHR Unmodified 1528.7456 0.74564657 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.525 37.805 3 4.4267E-07 17526 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.66 107.8 609480000 58379000 51270000 53227000 737870 0 0 59053000 48654000 44916000 0 0 466160 43681000 47962000 44111000 0 0 0 53725000 49865000 53435000 0 0 0 14289 801 13918 269252;269253;269254;269255;269256;269257;269258;269259;269260;269261;269262;269263;269264;269265 165402;165403;165404 165404 3 MDEVIYEEFK Unmodified 1301.585 0.58495498 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.037 36.204 2 0.00030947 17521 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.46 108.3 517610000 85107000 74788000 73588000 2425100 2651200 2487600 33776000 31769000 35548000 10634000 9726500 9257500 20311000 20752000 19638000 0 0 0 33307000 26810000 25031000 0 0 0 14290 982 13919 269266;269267;269268;269269;269270;269271;269272;269273;269274;269275;269276;269277;269278;269279;269280;269281;269282;269283 165405;165406;165407;165408;165409;165410;165411;165412;165413;165414;165415;165416;165417 165415 9 MDEVIYEEFKGTGNMELHLSR Unmodified 2497.1617 0.16174531 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 41.474 39.098 4 0.00010409 15492 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 73.405 73.39 30608000 0 0 0 0 1200600 0 0 0 0 10877000 10022000 8508600 0 0 0 0 0 0 0 0 0 0 0 0 14291 982 13920 269284;269285;269286;269287 165418;165419;165420 165420 3 MDFADTQNFWAWR Unmodified 1686.7249 0.72491113 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.194 52.752 2 6.7312E-05 25862 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.4 107.4 160110000 9886000 10615000 11276000 0 0 0 12234000 11587000 16136000 0 0 0 12643000 9618400 10321000 0 0 0 18774000 17977000 19038000 0 0 0 14292 849 13921 269288;269289;269290;269291;269292;269293;269294;269295;269296;269297;269298;269299 165421;165422;165423;165424;165425 165421 0 MDFCMDER Unmodified 1102.3882 0.3881862 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.506 26.358 2 0.00057683 11585 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 132.08 132.08 231510000 16461000 21270000 20649000 0 0 0 22735000 23361000 21035000 0 0 0 19225000 22699000 17221000 0 0 0 14385000 17331000 15143000 0 0 0 14293 880 13922 269300;269301;269302;269303;269304;269305;269306;269307;269308;269309;269310;269311 165426;165427;165428;165429 165427 4 MDFPQQLEACVK Unmodified 1464.6741 0.67412112 1202 P22939 ispA Farnesyl diphosphate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.048 37.367 2 1.0449E-09 17498 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 179.8 158.93 265160000 27500000 17455000 21624000 0 970120 401040 16955000 17120000 19752000 0 0 0 21850000 15657000 17364000 0 0 0 26677000 29206000 32629000 0 0 0 14294 1202 13923 269312;269313;269314;269315;269316;269317;269318;269319;269320;269321;269322;269323;269324;269325 165430;165431;165432;165433;165434;165435;165436;165437;165438;165439;165440 165438 11 MDGNKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHR Unmodified 4555.3605 0.36054356 224 P0A6A3 ackA Acetate kinase yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 2 2 2 2 2 2 1 2 1 2 2 2 53.626 52.395 5;6 3.0023E-35 25946 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 174.69 173.6 1074700000 39992000 38171000 43097000 0 2632500 0 93274000 108450000 100820000 0 0 0 109920000 96494000 89902000 5227600 9944300 8478500 122680000 101000000 104580000 0 0 0 14295 224 13924 269326;269327;269328;269329;269330;269331;269332;269333;269334;269335;269336;269337;269338;269339;269340;269341;269342;269343;269344;269345;269346;269347;269348;269349;269350;269351;269352;269353;269354 165441;165442;165443;165444;165445;165446;165447;165448;165449 165442 9 MDHFMDWLAK Unmodified 1292.5682 0.56819948 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 2 1 1 41.495 39.89 2;3 3.7049E-08 19695 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 203.35 196.45 24743000000 1051300000 1044100000 998520000 7965700 7558700 8140900 2746800000 2574100000 2713000000 20656000 19744000 20955000 2816000000 2880900000 2544800000 13025000 9583800 9808000 1633900000 1847600000 1727300000 18759000 14947000 13664000 14296 212 13925 269355;269356;269357;269358;269359;269360;269361;269362;269363;269364;269365;269366;269367;269368;269369;269370;269371;269372;269373;269374;269375;269376;269377;269378;269379;269380;269381;269382;269383;269384;269385;269386;269387;269388;269389;269390;269391;269392 165450;165451;165452;165453;165454;165455;165456;165457;165458;165459;165460;165461;165462;165463;165464;165465;165466;165467;165468;165469;165470;165471;165472;165473;165474;165475;165476;165477;165478;165479;165480;165481;165482;165483;165484;165485;165486;165487;165488;165489;165490;165491;165492;165493;165494;165495 165464 46 MDHFMDWLAK Oxidation (M) 1308.5631 0.5631141 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 8 8 1 11 10 13 1 13 11 9 11 9 8 1 37.991 36.361 2;3 1.7547E-05 19751 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 152.34 144.77 2048600000 79454000 64214000 73462000 0 265930 0 319510000 310220000 268670000 869510 0 0 220350000 187170000 154750000 0 0 0 127360000 133950000 107660000 0 0 648770 14297 212 13925 269393;269394;269395;269396;269397;269398;269399;269400;269401;269402;269403;269404;269405;269406;269407;269408;269409;269410;269411;269412;269413;269414;269415;269416;269417;269418;269419;269420;269421;269422;269423;269424;269425;269426;269427;269428;269429;269430;269431;269432;269433;269434;269435;269436;269437;269438;269439;269440;269441;269442;269443;269444;269445;269446;269447;269448;269449;269450;269451;269452;269453;269454;269455;269456;269457;269458;269459;269460;269461;269462;269463;269464;269465;269466;269467;269468;269469;269470;269471;269472;269473;269474;269475;269476;269477;269478;269479;269480;269481;269482;269483;269484;269485;269486;269487;269488;269489;269490;269491;269492;269493;269494;269495;269496;269497;269498;269499;269500;269501;269502;269503;269504;269505;269506;269507;269508;269509;269510;269511;269512;269513;269514;269515 165496;165497;165498;165499;165500;165501;165502;165503;165504;165505;165506;165507;165508;165509;165510;165511;165512;165513;165514;165515;165516;165517;165518;165519;165520;165521;165522;165523;165524;165525;165526;165527;165528;165529;165530;165531;165532;165533;165534;165535;165536;165537;165538;165539;165540;165541;165542;165543;165544;165545;165546;165547;165548;165549;165550;165551;165552;165553;165554;165555;165556;165557;165558;165559;165560;165561;165562;165563;165564;165565;165566;165567;165568;165569;165570;165571;165572;165573;165574;165575;165576;165577;165578;165579;165580;165581;165582;165583;165584 165528 74;75 85 MDHLPIFCQLR Unmodified 1428.7006 0.70061064 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.795 36.121 3 0.00018056 17361 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.681 72.543 79852000 8024600 8081800 7895700 0 0 0 5866200 5461200 7387000 0 0 0 4356300 4721100 5402100 0 0 0 7721400 8079600 6855000 0 0 0 14298 843 13926 269516;269517;269518;269519;269520;269521;269522;269523;269524;269525;269526;269527 165585;165586;165587;165588 165587 1 MDHSLNSLNNFDFLAR Unmodified 1892.8839 0.88393097 1287 P26649 glgS Glycogen synthesis protein GlgS yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 1 1 1 45.417 43.944 2;3 1.8224E-10 21842 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 145.49 141.89 533050000 11116000 11524000 8517900 0 0 0 99674000 100560000 108710000 0 0 0 44467000 46428000 34140000 0 0 0 21362000 25720000 20829000 0 0 0 14299 1287 13927 269528;269529;269530;269531;269532;269533;269534;269535;269536;269537;269538;269539;269540;269541;269542;269543;269544;269545 165589;165590;165591;165592;165593;165594;165595;165596;165597;165598;165599;165600 165589 12 MDIDEAVR Unmodified 947.43823 0.43823117 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.881 22.292 2 1.518E-06 9520 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 192.28 175.73 2665700000 29650000 22555000 34090000 3163400 0 0 280210000 271680000 245630000 30039000 26751000 21981000 188060000 189870000 190950000 7714500 6718500 6512900 342990000 353290000 363800000 16482000 16594000 16922000 14300 531 13928 269546;269547;269548;269549;269550;269551;269552;269553;269554;269555;269556;269557;269558;269559;269560;269561;269562;269563;269564;269565;269566;269567 165601;165602;165603;165604;165605;165606;165607;165608;165609;165610;165611;165612;165613;165614;165615;165616;165617 165609 17 MDIISVALK Unmodified 988.5627 0.5627034 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.379 40.68 1;2 0.00069069 19677 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.74 79.536 2029800000 167740000 181250000 149970000 0 0 0 216010000 193800000 183080000 0 0 0 128950000 123240000 121950000 0 0 0 194840000 184830000 184170000 0 0 0 14301 1505 13929 269568;269569;269570;269571;269572;269573;269574;269575;269576;269577;269578;269579;269580;269581;269582;269583;269584;269585;269586;269587;269588;269589;269590;269591 165618;165619;165620;165621;165622;165623;165624;165625;165626;165627;165628;165629;165630;165631 165628 12 MDLASLR Unmodified 804.41637 0.41637351 1724 P68739 nfi Endonuclease V yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.843 26.899 2 0.0017557 9153 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 124.37 69.848 145470000 17452000 18493000 17511000 691790 0 0 13055000 12350000 10626000 0 0 0 5595000 4789500 4745300 4095700 3129700 3334800 8963900 10471000 10163000 0 0 0 14302 1724 13930 269592;269593;269594;269595;269596;269597;269598;269599;269600;269601;269602;269603;269604;269605;269606;269607 165632;165633;165634 165632 3 MDLSQLTPR Unmodified 1059.5383 0.53827956 974 P0AFZ3 sspB Stringent starvation protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.7 33.042 2 4.3704E-11 16132 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 204.03 179.18 421870000 29941000 29877000 25818000 1532300 1510800 1330500 30534000 29550000 31180000 4289800 3856500 3189300 34189000 32751000 31958000 0 0 0 42181000 44672000 41200000 0 0 2305400 14303 974 13931 269608;269609;269610;269611;269612;269613;269614;269615;269616;269617;269618;269619;269620;269621;269622;269623;269624;269625;269626 165635;165636;165637;165638;165639;165640;165641;165642;165643;165644;165645;165646;165647;165648;165649;165650;165651 165638 17 MDLVDYSEETFTR Unmodified 1604.7028 0.70283829 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.379 43.744 2 1.3385E-17 21229 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 215.84 211.55 1397100000 82151000 71230000 72661000 2160700 2320800 2129900 102120000 93338000 95033000 3236200 2212800 2599900 99469000 93881000 85334000 0 0 0 208810000 203740000 168140000 2122500 2168800 2213200 14304 1218 13932 269627;269628;269629;269630;269631;269632;269633;269634;269635;269636;269637;269638;269639;269640;269641;269642;269643;269644;269645;269646;269647 165652;165653;165654;165655;165656;165657;165658;165659;165660;165661;165662;165663 165660 12 MDMDLNNR Unmodified 1007.4164 0.41644987 443 P0A8L7 yciU UPF0263 protein YciU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.754 20.244 2 0.0019651 7757 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.45 98.968 181670000 16592000 15676000 15991000 0 0 0 17178000 13188000 13612000 0 0 0 12325000 14208000 15143000 0 0 0 17832000 16696000 13231000 0 0 0 14305 443 13933 269648;269649;269650;269651;269652;269653;269654;269655;269656;269657;269658;269659 165664;165665;165666;165667;165668;165669;165670 165667 4 MDMHSGTFNPQDFAWQGLTLTPAAAIHIR Unmodified 3225.5488 0.54880803 1924 P77667 sufA Protein SufA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 2 53.258 51.824 3;4 1.0276E-11 25642 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 130.69 130.22 914100000 100470000 96074000 112140000 5410300 5896200 4868500 96397000 99515000 104460000 15468000 13900000 14460000 34568000 43887000 41300000 0 0 0 44398000 44235000 36650000 0 0 0 14306 1924 13934 269660;269661;269662;269663;269664;269665;269666;269667;269668;269669;269670;269671;269672;269673;269674;269675;269676;269677;269678;269679;269680;269681;269682;269683;269684;269685;269686;269687;269688;269689;269690 165671;165672;165673;165674;165675;165676;165677;165678;165679;165680;165681;165682;165683 165674 13 MDNAVDR Unmodified 819.3545 0.35450154 414 P0A8A4 ppsR Phosphoenolpyruvate synthase regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.792 11.613 2 0.0055025 2809 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 99.375 52.33 121170000 18134000 21556000 21864000 0 0 0 6813100 0 10402000 0 0 0 7306800 5126400 5896500 0 0 0 11336000 5561300 7179100 0 0 0 14307 414 13935 269691;269692;269693;269694;269695;269696;269697;269698;269699;269700;269701 165684;165685;165686 165686 3 MDNFLALTLTGK Unmodified 1322.6904 0.69042311 1833 P76215 astE Succinylglutamate desuccinylase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 51.167 49.962 2 7.9922E-05 24413 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.752 95.336 39053000 14202000 12103000 12748000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14308 1833 13936 269702;269703;269704 165687;165688 165687 2 MDPLDILIR Unmodified 1084.5951 0.59506616 1646 P62601 treF Cytoplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.918 52.47 2 0.0017177 25644 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.696 50.138 72430000 11845000 9704600 10090000 0 0 0 9539900 11270000 8086300 0 0 0 844470 0 2483800 0 0 0 2892100 3152800 2520500 0 0 0 14309 1646 13937 269705;269706;269707;269708;269709;269710;269711;269712;269713;269714;269715 165689;165690;165691 165691 3 MDPNTQFLK Unmodified 1092.5274 0.52738052 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 26.518 25.358 2 0.00011938 11736 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.6 127.94 714560000 70918000 0 0 0 0 0 87485000 89154000 86325000 0 0 0 68039000 71129000 0 0 0 0 78212000 82465000 79643000 0 1193900 0 14310 473 13938 269716;269717;269718;269719;269720;269721;269722;269723;269724;269725;269726 165692;165693;165694;165695;165696;165697;165698;165699;165700 165692 9 MDQAGIIR Unmodified 902.46439 0.46438634 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.123 18.599 2 0.00031499 6929 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.21 96.079 529950000 54930000 56004000 47670000 0 0 0 58004000 55417000 49441000 0 0 0 25515000 23330000 23366000 6341700 5299600 5511600 40940000 37508000 40674000 0 0 0 14311 731 13939 269727;269728;269729;269730;269731;269732;269733;269734;269735;269736;269737;269738;269739;269740;269741 165701;165702;165703;165704;165705;165706;165707;165708;165709;165710;165711;165712 165708 12 MDQALLDGGYR Unmodified 1237.5761 0.57612163 915 P0AF59 yjdI Uncharacterized protein YjdI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.308 27.979 2 2.7827E-07 13312 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 160.36 154.33 191430000 0 0 0 0 0 0 40374000 39197000 38569000 0 0 0 12332000 12835000 12398000 0 0 0 12421000 11419000 11888000 0 0 0 14312 915 13940 269742;269743;269744;269745;269746;269747;269748;269749;269750 165713;165714;165715;165716;165717 165713 2 MDQFECINVADAHQK Unmodified 1804.7873 0.78725339 284 P0A6V5 glpE Thiosulfate sulfurtransferase GlpE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 25.702 24.62 2;3 4.6741E-06 11380 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.811 65.179 467220000 31279000 30839000 28977000 0 0 0 29564000 33938000 33897000 0 0 0 33704000 38747000 29875000 0 0 0 59278000 59098000 58028000 0 0 0 14313 284 13941 269751;269752;269753;269754;269755;269756;269757;269758;269759;269760;269761;269762;269763;269764;269765;269766;269767;269768;269769;269770;269771;269772;269773 165718;165719;165720;165721;165722;165723;165724;165725;165726;165727 165718 10 MDQTYSLESFLNHVQK Unmodified 1938.9146 0.9145624 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 45.278 43.728 2;3 9.7375E-19 21218 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 196.67 192.8 1157800000 318570000 288350000 310570000 993020 983830 0 38678000 32641000 31081000 2888800 1914900 1593100 17286000 16124000 14077000 0 0 0 29540000 27326000 25160000 0 0 0 14314 26 13942 269774;269775;269776;269777;269778;269779;269780;269781;269782;269783;269784;269785;269786;269787;269788;269789;269790;269791;269792;269793;269794 165728;165729;165730;165731;165732;165733;165734;165735;165736;165737;165738;165739;165740 165736 9 MDSFRDVWMLR Unmodified 1454.6799 0.6798752 835 P0AE60 cedA Cell division activator CedA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 40.886 41.008 3 0.00079716 14366 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 77.674 71.769 65528000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18493000 17690000 29345000 0 0 0 0 0 0 14315 835 13943 269795;269796;269797 165741;165742;165743 165742 3 MDSLNLNK Unmodified 933.45897 0.45896661 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 18.973 19.314 2 0.00011588 5745 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 157.99 113.46 2390200000 22155000 24369000 19459000 3671800 4186300 3934200 237400000 233060000 198030000 38904000 34901000 31112000 199170000 163060000 154930000 6076900 5062700 5825000 319610000 300380000 310500000 24942000 26504000 22986000 14316 531 13944 269798;269799;269800;269801;269802;269803;269804;269805;269806;269807;269808;269809;269810;269811;269812;269813;269814;269815;269816;269817;269818;269819;269820;269821;269822 165744;165745;165746;165747;165748;165749;165750;165751;165752;165753;165754;165755;165756;165757;165758;165759;165760;165761;165762 165752 19 MDSSFTPIEQMLK Unmodified 1525.7157 0.71565158 744 P0ACR9 mprA Transcriptional repressor MprA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.075 47.852 2 0.00043741 19135 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 102.53 96.496 1490300000 135490000 124640000 123440000 4113800 3547200 4056600 92288000 92736000 99589000 12973000 9618200 11645000 106560000 98078000 97637000 4804200 2413700 5466900 144580000 146980000 141790000 10012000 8640500 9250400 14317 744 13945 269823;269824;269825;269826;269827;269828;269829;269830;269831;269832;269833;269834;269835;269836;269837;269838;269839;269840;269841;269842;269843;269844;269845;269846 165763;165764 165764 2 MDSYVDLLQSHGGSMIMLAK Unmodified 2195.0425 0.042481801 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.771 48.325 3 1.6005E-10 22597 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 108.17 107.64 434430000 4941700 0 0 0 0 0 65783000 67012000 61605000 1447600 1146500 0 76505000 66421000 57695000 0 0 0 12134000 9994900 9748900 0 0 0 14318 1097 13946 269847;269848;269849;269850;269851;269852;269853;269854;269855;269856;269857;269858 165765;165766;165767;165768;165769;165770 165769 6 MDSYVDQLQAQGGSMIMLAK Unmodified 2185.0217 0.021746359 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 50.395 48.977 2;3 3.8336E-37 23857 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 227.42 220.22 467290000 50167000 44495000 34910000 0 0 0 17812000 20560000 18512000 0 2116300 0 47999000 37394000 42797000 0 0 0 49658000 51340000 49529000 0 0 0 14319 696 13947 269859;269860;269861;269862;269863;269864;269865;269866;269867;269868;269869;269870;269871;269872;269873;269874;269875;269876;269877;269878;269879;269880;269881;269882;269883 165771;165772;165773;165774;165775;165776;165777;165778;165779;165780;165781;165782;165783 165779 13 MDTLAGIFGIGQHPK Unmodified 1583.813 0.81299786 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 1 1 1 2 2 2 1 2 2 42.783 41.086 2;3 5.8035E-09 20068 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.07 144.42 4153300000 381830000 375940000 358050000 5327600 6380200 5854600 372590000 328960000 302880000 21994000 20258000 19120000 261840000 261100000 275030000 6550000 4741300 4437800 365310000 377770000 372800000 8650300 7200900 8725900 14320 62 13948 269884;269885;269886;269887;269888;269889;269890;269891;269892;269893;269894;269895;269896;269897;269898;269899;269900;269901;269902;269903;269904;269905;269906;269907;269908;269909;269910;269911;269912;269913;269914;269915;269916;269917;269918;269919;269920;269921;269922;269923;269924;269925;269926;269927;269928;269929 165784;165785;165786;165787;165788;165789;165790;165791;165792;165793;165794;165795;165796;165797;165798;165799;165800;165801;165802;165803;165804;165805;165806;165807;165808;165809 165796 23 MDVSYLLDSLNDK Unmodified 1511.7178 0.71776007 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 53.318 51.937 2 1.3407E-06 25359 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.3 128.99 64362000 10428000 11139000 11916000 0 0 0 0 0 0 0 1194700 0 0 5136600 4895200 0 0 0 0 0 10563000 3497600 2687100 2904700 14321 80 13949 269930;269931;269932;269933;269934;269935;269936;269937;269938;269939 165810 165810 1 MDVSYLLDSLNDKQR Unmodified 1795.8774 0.87744861 80 P03018 uvrD DNA helicase II yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 45.892 45.374 3 1.1282E-11 17205 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 162.37 155.64 41036000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14965000 24169000 0 0 0 0 0 0 1902100 14322 80 13950 269940;269941;269942;269943 165811;165812;165813 165811 3 MDYEFLR Unmodified 972.4375 0.43750288 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.622 34.069 2 0.00084363 12971 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 143.37 143.37 14051000000 31955000 30513000 23907000 851400 911840 860360 25270000 20981000 22127000 1084300000 950280000 1011400000 20890000 18431000 19666000 467570000 409200000 351840000 13785000 17995000 16205000 3173200000 2993300000 3346000000 14323 422 13951 269944;269945;269946;269947;269948;269949;269950;269951;269952;269953;269954;269955;269956;269957;269958;269959;269960;269961;269962;269963;269964;269965;269966;269967 165814;165815;165816;165817;165818;165819;165820;165821;165822;165823;165824;165825;165826;165827;165828;165829;165830;165831;165832 165823 18 MDYEFLR Oxidation (M) 988.43242 0.43241751 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 4 4 4 4 4 3 4 4 4 32.53 31.055 2 0.00084895 11629 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 148.07 137 687970000 0 0 0 0 0 0 0 0 0 76683000 61640000 58992000 0 0 0 16280000 9972800 9151700 0 0 0 178240000 114560000 162440000 14324 422 13951 269968;269969;269970;269971;269972;269973;269974;269975;269976;269977;269978;269979;269980;269981;269982;269983;269984;269985;269986;269987;269988;269989;269990;269991;269992;269993;269994;269995;269996;269997;269998;269999;270000;270001;270002 165833;165834;165835;165836;165837;165838;165839;165840;165841;165842;165843;165844;165845;165846;165847;165848;165849;165850;165851;165852;165853;165854;165855;165856;165857 165835 205 23 MDYTLTR Unmodified 898.42185 0.42185282 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.537 21.597 2 0.00047536 8751 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 153.15 135.59 957330000 42405000 34169000 37898000 10793000 11277000 11680000 62550000 61685000 52144000 29381000 18471000 25385000 82452000 65904000 64915000 10359000 6839600 6739900 81841000 95825000 91260000 27023000 26333000 0 14325 927 13952 270003;270004;270005;270006;270007;270008;270009;270010;270011;270012;270013;270014;270015;270016;270017;270018;270019;270020;270021;270022;270023;270024;270025 165858;165859;165860;165861;165862;165863;165864;165865;165866;165867;165868;165869 165866 12 MEAAGKPTDKPNLVCGPVQICWHK Unmodified 2735.3346 0.3345815 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 2 1 2 4 4 4 3 2 2 3 3 3 3 3 3 28.534 27.118 2;3;4;5 3.2496E-49 12922 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 244.97 230.8 26216000000 3398400000 2929200000 2675700000 5650000 2788600 4867500 5066400000 5237400000 5197100000 69840000 47284000 49466000 213520000 222470000 272100000 0 0 0 283420000 287310000 253260000 0 0 0 14326 1755;1756 13953 270026;270027;270028;270029;270030;270031;270032;270033;270034;270035;270036;270037;270038;270039;270040;270041;270042;270043;270044;270045;270046;270047;270048;270049;270050;270051;270052;270053;270054;270055;270056;270057;270058;270059;270060;270061;270062;270063;270064;270065;270066;270067;270068;270069;270070;270071;270072;270073;270074;270075;270076;270077;270078;270079 165870;165871;165872;165873;165874;165875;165876;165877;165878;165879;165880;165881;165882;165883;165884;165885;165886;165887;165888;165889;165890;165891;165892;165893;165894;165895;165896;165897;165898;165899;165900;165901;165902;165903;165904;165905;165906;165907;165908;165909;165910;165911;165912;165913;165914 165880 45 MEAAGKPTDKPNLVCGPVQICWHK Oxidation (M) 2751.3295 0.32949612 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 1 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 4 4 4 3 4 3 1 1 2 1 27.438 26.217 3;4;5 4.1447E-15 12063 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.45 141.44 1834800000 201810000 167030000 189730000 0 0 0 438660000 433900000 365540000 0 0 0 0 0 3829600 0 0 0 7483200 19160000 7707500 0 0 0 14327 1755;1756 13953 270080;270081;270082;270083;270084;270085;270086;270087;270088;270089;270090;270091;270092;270093;270094;270095;270096;270097;270098;270099;270100;270101;270102;270103;270104;270105;270106 165915;165916;165917;165918;165919;165920;165921;165922;165923;165924;165925;165926;165927;165928;165929;165930 165919 610 16 MEAIINSMTMK Unmodified 1267.5975 0.5974507 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.061 32.595 2 1.115E-05 12992 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 168.83 168.83 327130000 20911000 20456000 17192000 4530600 3803000 4150500 9513300 14665000 12243000 24183000 19615000 22414000 13895000 13809000 13746000 4932200 3013400 4801500 19557000 17249000 23286000 15796000 9515000 13854000 14328 1009 13954 270107;270108;270109;270110;270111;270112;270113;270114;270115;270116;270117;270118;270119;270120;270121;270122;270123;270124;270125;270126;270127;270128;270129;270130 165931;165932;165933;165934;165935;165936;165937;165938;165939;165940;165941;165942 165934 12 MEAPAVR Unmodified 772.39016 0.39015876 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.737 14.412 2 0.0014403 4207 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 129.96 113.79 4784000000 598470000 468740000 394880000 5007800 0 0 503290000 456320000 424290000 4190100 2821600 2489600 328320000 325740000 284630000 0 0 1752300 322400000 343110000 317580000 0 0 0 14329 1577 13955 270131;270132;270133;270134;270135;270136;270137;270138;270139;270140;270141;270142;270143;270144;270145;270146;270147 165943;165944;165945;165946;165947;165948;165949;165950;165951;165952;165953 165953 8 MECCGVCHTDLHVK Unmodified 1744.7154 0.71535078 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 2 1 1 1 1 1 13.635 14.454 2;3 2.0597E-06 4577 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.97 125.97 229530000 58949000 59417000 36728000 0 0 0 13543000 17505000 10784000 0 0 0 0 5084900 0 0 0 0 6442500 9648600 11429000 0 0 0 14330 1541 13956 270148;270149;270150;270151;270152;270153;270154;270155;270156;270157;270158;270159;270160;270161 165954;165955;165956;165957;165958;165959 165957 6 MEDGDLDVLR Unmodified 1161.5336 0.53358811 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 32.695 31.228 2 9.9398E-05 14246 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 105.52 98.327 589690000 72736000 60544000 0 0 0 0 99517000 89577000 80138000 0 0 0 0 0 0 0 0 0 87292000 99889000 0 0 0 0 14331 1956 13957 270162;270163;270164;270165;270166;270167;270168;270169;270170;270171;270172 165960;165961;165962;165963;165964;165965;165966;165967;165968;165969 165967 8 MEDGDLDVLR Oxidation (M) 1177.5285 0.52850274 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 28.882 27.48 2 0.0077447 12886 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 64.04 56.473 18381000 0 0 0 0 0 0 5680200 3905100 0 0 0 0 2086100 2288000 0 0 0 0 4421800 0 0 0 0 0 14332 1956 13957 270173;270174;270175;270176;270177 165970 165970 614 0 MEFPEPVISIAVEPK Unmodified 1684.8746 0.87459506 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 3 3 2 2 2 2 2 2 2 1 1 2 2 3 1 2 2 51.763 50.553 2;3 5.6662E-06 24528 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 125.54 125.14 24645000000 2265300000 2093400000 2299900000 23272000 21842000 20073000 1650300000 1401200000 1394200000 17234000 18131000 22305000 2257400000 2140500000 1844000000 18224000 7860100 9575900 2343700000 2290200000 2460100000 13561000 16684000 15767000 14333 264 13958 270178;270179;270180;270181;270182;270183;270184;270185;270186;270187;270188;270189;270190;270191;270192;270193;270194;270195;270196;270197;270198;270199;270200;270201;270202;270203;270204;270205;270206;270207;270208;270209;270210;270211;270212;270213;270214;270215;270216;270217;270218;270219;270220;270221;270222;270223;270224;270225;270226 165971;165972;165973;165974;165975;165976;165977;165978;165979;165980;165981;165982;165983;165984;165985;165986;165987;165988;165989;165990;165991;165992;165993;165994;165995;165996;165997;165998;165999;166000;166001;166002;166003;166004;166005;166006;166007 165985 36 MEFPEPVISIAVEPK Oxidation (M) 1700.8695 0.86950968 264 P0A6M8 fusA Elongation factor G yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 47.879 46.511 2 1.5064E-06 22972 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.24 108.11 495650000 40637000 40001000 34879000 1101700 0 0 47265000 39313000 32639000 0 0 0 39921000 35879000 31579000 0 0 0 52329000 50262000 49844000 0 0 0 14334 264 13958 270227;270228;270229;270230;270231;270232;270233;270234;270235;270236;270237;270238;270239;270240;270241;270242;270243;270244;270245;270246;270247;270248;270249;270250;270251 166008;166009;166010;166011;166012;166013;166014;166015;166016;166017;166018;166019;166020;166021;166022;166023;166024;166025;166026;166027;166028;166029;166030 166008 116 23 MEFTIQK Unmodified 895.44734 0.44733929 1029 P0AGL7 rsmE Ribosomal RNA small subunit methyltransferase E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 24.618 23.647 2 0.0064822 10335 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 90.986 84.632 68435000 10754000 0 8590600 0 0 0 4239400 0 6316200 0 0 0 5543700 3880200 4048600 0 0 0 7739900 8850200 8472300 0 0 0 14335 1029 13959 270252;270253;270254;270255;270256;270257;270258;270259;270260;270261;270262 166031;166032;166033 166032 3 MEGIEEPLAR Unmodified 1143.5594 0.55940893 1972 Q47146 fadE Acyl-coenzyme A dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 27.112 25.939 2 0.0027927 8584 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 76.827 74.124 22982000 7503000 0 10345000 1511900 1646600 1975500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14336 1972 13960 270263;270264;270265;270266;270267 166034 166034 1 MEGVANVHLDALEHGDTIAFMHSVQDGAASK Unmodified 3249.5183 0.51829576 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 42.063 40.229 4 0.16223 19608 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 13.513 11.654 80033000 0 0 10735000 0 0 0 0 0 0 1188100 0 1307800 9601700 11419000 0 0 0 0 17457000 13933000 14391000 0 0 0 14337 1230 13961 270268;270269;270270;270271;270272;270273;270274;270275 166035 166035 1 MEIYENENDQVEAVK Unmodified 1809.8091 0.80909427 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.627 26.462 2 5.7405E-20 11608 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 203.83 200.3 109760000 0 5093300 3887700 0 0 0 9348000 9939000 10647000 0 0 0 10509000 8276200 9429500 0 0 0 17470000 12739000 12421000 0 0 0 14338 1876 13962 270276;270277;270278;270279;270280;270281;270282;270283;270284;270285;270286 166036;166037;166038 166037 3 MEIYENENDQVEAVKR Unmodified 1965.9102 0.9102053 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.285 22.014 3 0.0013003 6424 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 63.631 62.238 219030000 0 5628100 7307800 6142100 6277100 6228100 10436000 0 11555000 20800000 16007000 18877000 10697000 10046000 0 3363800 3275500 2423000 15952000 14535000 15575000 12077000 8397300 13427000 14339 1876 13963 270287;270288;270289;270290;270291;270292;270293;270294;270295;270296;270297;270298;270299;270300;270301;270302;270303;270304;270305;270306;270307 166039 166039 1 MEKDAADNEAK Unmodified 1220.5343 0.53431639 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 4.8954 5.7874 2 0.0020061 1039 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 82.029 72.814 64066000 0 0 0 0 0 0 5697000 0 4213500 0 0 0 6620000 7634800 8079400 0 0 0 10995000 11279000 9547200 0 0 0 14340 1572 13964 270308;270309;270310;270311;270312;270313;270314;270315 166040;166041 166040 2 MELHCPQCQHVLDQDNGHAR Unmodified 2444.0532 0.053214693 1875 P76575 yfgJ Uncharacterized protein YfgJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 14.802 15.611 5 0.16377 5266 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 17.031 16.804 85832000 0 0 0 0 0 0 8145400 9828900 11780000 0 0 0 5656800 10823000 4138100 0 0 0 11800000 10853000 12806000 0 0 0 14341 1875 13965 270316;270317;270318;270319;270320;270321;270322;270323;270324 166042 166042 0 MELIAPAHVDNPFR Unmodified 1608.8082 0.80824683 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.584 36.846 3 0.00045579 17830 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.034 63.486 129250000 18780000 16381000 15059000 440450 580860 549040 9985900 7065600 6867200 0 593360 0 4700300 5593100 6777500 0 0 0 11817000 13044000 11019000 0 0 0 14342 1664 13966 270325;270326;270327;270328;270329;270330;270331;270332;270333;270334;270335;270336;270337;270338;270339;270340 166043;166044;166045;166046;166047;166048;166049;166050;166051;166052 166049 0 MELIFLGTSAGVPTR Unmodified 1590.844 0.84396364 462 P0A8V0 rbn Ribonuclease BN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 50.786 49.457 2 1.7075E-11 24102 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 167.3 157.35 81421000 7234900 6709100 0 0 0 0 5212100 5748100 7144600 0 0 0 7886500 6330900 5743000 0 0 0 8543100 11288000 9581400 0 0 0 14343 462 13967 270341;270342;270343;270344;270345;270346;270347;270348;270349;270350;270351 166053;166054 166053 2 MELLLLSNSTLPGK Unmodified 1514.8378 0.83781563 331 P0A7C6 pepE Peptidase E yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.524 48.158 2 1.7956E-05 23873 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.45 119.45 450210000 22934000 19372000 21773000 0 0 0 58773000 51213000 52695000 0 0 0 44715000 44638000 42793000 0 0 0 30038000 31126000 30143000 0 0 0 14344 331 13968 270352;270353;270354;270355;270356;270357;270358;270359;270360;270361;270362;270363 166055;166056;166057;166058;166059;166060;166061;166062 166055 8 MELSSLTAVSPVDGR Unmodified 1560.7818 0.78175731 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 40.342 38.627 2;3 1.4685E-20 19191 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 265.61 253.03 2228600000 286370000 266360000 243020000 219030 0 0 97001000 100970000 94839000 2703900 0 0 178120000 176280000 165830000 0 0 0 212710000 215610000 188550000 0 0 0 14345 638 13969 270364;270365;270366;270367;270368;270369;270370;270371;270372;270373;270374;270375;270376;270377;270378;270379;270380;270381;270382;270383;270384;270385;270386;270387;270388;270389 166063;166064;166065;166066;166067;166068;166069;166070;166071;166072;166073;166074;166075;166076;166077;166078;166079;166080;166081 166063 18 MEMLEEHR Unmodified 1073.4634 0.46340006 1405 P33018 yeiG S-formylglutathione hydrolase YeiG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.187 15.003 3 0.0014976 4856 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.374 93.374 168450000 38320000 43339000 34833000 0 0 0 6431100 6741400 5485100 0 0 0 3392000 4192900 4025500 0 0 0 6557000 9332700 5803600 0 0 0 14346 1405 13970 270390;270391;270392;270393;270394;270395;270396;270397;270398;270399;270400;270401 166082;166083;166084 166084 3 MEMTNAQR Oxidation (M) 995.41645 0.41644987 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 1 0 By MS/MS By MS/MS By matching 1 1 1 10.182 10.952 2 0.0011605 2463 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.93 117.93 11269000 0 0 0 0 0 0 4202900 5130800 0 0 0 0 0 0 0 0 0 0 1934900 0 0 0 0 0 14347 468 13971 270402;270403;270404 166085;166086 166085 283 2 MEMTNAQR Unmodified 979.42154 0.42153524 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.606 12.459 2 9.9959E-07 3396 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 195.98 195.98 1058600000 106740000 90726000 82741000 0 0 977320 131420000 125800000 132390000 0 0 0 69927000 69893000 63407000 0 0 0 68786000 56638000 59170000 0 0 0 14348 468 13971 270405;270406;270407;270408;270409;270410;270411;270412;270413;270414;270415;270416;270417 166087;166088;166089;166090;166091;166092;166093;166094;166095;166096;166097;166098 166093 12 MEMVSFSELVLNPVAQVK Unmodified 2020.0373 0.037320069 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 1 54.769 53.319 2;3 2.8627E-19 25173 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 180.24 162.11 691680000 19231000 0 14048000 3909800 3780700 4102400 97111000 91690000 99707000 36019000 38237000 35999000 41555000 56214000 43902000 0 0 0 37990000 29861000 34727000 0 3599700 0 14349 664 13972 270418;270419;270420;270421;270422;270423;270424;270425;270426;270427;270428;270429;270430;270431;270432;270433;270434;270435;270436;270437;270438;270439;270440;270441;270442;270443;270444;270445;270446;270447;270448 166099;166100;166101;166102;166103;166104;166105;166106 166106 8 MEMVYCLPAELGVPTTSSPLK Unmodified 2322.131 0.13096246 231 P0A6D0 argR Arginine repressor yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.197 51.772 2 4.0132E-10 25293 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.72 146.67 82634000 15723000 15643000 18776000 0 0 0 2968900 0 6576600 0 0 0 4705600 6029400 6518000 0 0 0 0 5693600 0 0 0 0 14350 231 13973 270449;270450;270451;270452;270453;270454;270455;270456;270457 166107 166107 1 MENDSTLLPSMLCAPTR Unmodified 1934.89 0.8900039 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1 1 2 2 2 45.957 44.963 2;3 1.526E-09 17121 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 156.5 142.84 117460000 2893900 0 0 0 0 0 0 0 0 0 0 0 0 0 1925900 16531000 13037000 13659000 5904900 4142800 3256800 18442000 18244000 19420000 14351 1448 13974 270458;270459;270460;270461;270462;270463;270464;270465;270466;270467;270468;270469;270470;270471;270472;270473;270474 166108;166109;166110;166111;166112;166113;166114;166115;166116 166108 9 MENFTTNLNQLAR Unmodified 1550.7511 0.75112588 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.876 35.186 2 1.3362E-10 17032 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 212.72 208.71 254160000 47018000 43326000 37350000 2087500 2726600 2795200 14607000 14010000 14090000 0 0 0 12091000 12035000 15348000 0 0 0 11569000 10873000 12048000 0 2181600 0 14352 658 13975 270475;270476;270477;270478;270479;270480;270481;270482;270483;270484;270485;270486;270487;270488;270489;270490 166117;166118;166119;166120;166121;166122;166123;166124 166119 6 MEPFFPSGLK Unmodified 1151.5685 0.56851706 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42 40.053 2 0.00062776 19353 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 90.709 77.442 233540000 0 0 0 2506200 2425800 2215000 20454000 29337000 23602000 8721300 8506700 8456200 22013000 22105000 20242000 0 0 0 0 26287000 27818000 4696700 4152100 0 14353 1365 13976 270491;270492;270493;270494;270495;270496;270497;270498;270499;270500;270501;270502;270503;270504;270505;270506 166125;166126;166127;166128;166129;166130;166131;166132;166133 166128 9 MEQEGYAR Unmodified 982.41783 0.41783007 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 11.459 12.277 2 0.00011928 3283 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.52 138.79 118200000 34636000 24924000 28157000 0 0 626110 0 0 0 0 0 0 0 0 0 0 0 0 16996000 0 12855000 0 0 0 14354 1085 13977 270507;270508;270509;270510;270511;270512 166134;166135;166136 166134 3 MEQELHHR Oxidation (M) 1094.4927 0.49272635 1662 P63284 clpB Chaperone protein ClpB yes yes 0 1 0 By MS/MS By matching By matching 1 1 1 4.6834 5.5713 2 0.0046487 1039 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.37 87.363 15776000 0 0 0 0 0 0 5991900 4863700 4920400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14355 1662 13978 270513;270514;270515 166137 166137 586 1 MEQELHHR Unmodified 1078.4978 0.49781173 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 2 2 5.9481 6.8141 2;3 0.00010521 1632 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.11 156.17 910820000 138660000 124450000 125860000 0 1414200 2639300 131580000 149420000 155040000 0 0 0 11128000 10598000 14495000 0 0 0 19261000 15452000 10828000 0 0 0 14356 1662 13978 270516;270517;270518;270519;270520;270521;270522;270523;270524;270525;270526;270527;270528;270529;270530;270531;270532;270533;270534;270535;270536;270537;270538 166138;166139;166140;166141;166142;166143;166144;166145;166146;166147;166148;166149;166150;166151;166152;166153 166150 10 MEQFRPNLVVSGASAWEEDRWK Unmodified 2634.2649 0.26490525 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 40.61 38.897 4 0.00010615 18962 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.575 74.747 209250000 22423000 26707000 19213000 1208700 0 0 19086000 17710000 19919000 0 0 0 17236000 0 0 0 0 0 25063000 21841000 18844000 0 0 0 14357 1784 13979 270539;270540;270541;270542;270543;270544;270545;270546;270547;270548;270549 166154 166154 1 MEQNLELLATAETWDNGKPIR Unmodified 2428.2057 0.20565904 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 45.5 43.916 3 0.0057388 21792 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 60.735 53.374 426660000 132710000 121700000 114110000 0 0 0 22204000 19858000 16083000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14358 1486 13980 270550;270551;270552;270553;270554;270555 166155;166156 166155 0 MEQNPQSQLK Oxidation (M) 1217.571 0.57103625 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 2 2 1 1 1 12.188 12.565 2 4.1676E-12 2689 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 207.68 174.84 378300000 0 0 0 0 0 0 16784000 14960000 14754000 1318800 0 0 0 0 0 95163000 96141000 102520000 12951000 11852000 11855000 0 0 0 14359 36 13981 270556;270557;270558;270559;270560;270561;270562;270563;270564;270565;270566;270567;270568 166157;166158;166159;166160;166161;166162;166163;166164;166165 166161 19 8 MEQNPQSQLK Unmodified 1201.5761 0.57612163 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 3 3 2 1 1 1 1 13.13 13.577 2 5.5476E-09 3132 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 191.85 160.77 11006000000 0 0 0 5883800 4444200 4610000 63512000 73543000 73941000 27839000 25608000 26205000 77539000 69384000 89929000 3395600000 3308200000 3595600000 0 0 101460000 19962000 20874000 22135000 14360 36 13981 270569;270570;270571;270572;270573;270574;270575;270576;270577;270578;270579;270580;270581;270582;270583;270584;270585;270586;270587;270588;270589;270590;270591;270592 166166;166167;166168;166169;166170;166171;166172;166173 166166 7 MEQSHWLLDGK Unmodified 1342.634 0.63397086 1884 P77202 dsbG Thiol:disulfide interchange protein DsbG yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.698 24.626 2 6.6781E-05 10919 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 126.19 104.73 83013000 7598700 8438400 10552000 0 0 0 5196800 5835700 6747600 0 0 0 5233500 5428700 4664800 0 0 0 8535300 7868300 6912400 0 0 0 14361 1884 13982 270593;270594;270595;270596;270597;270598;270599;270600;270601;270602;270603;270604 166174;166175;166176;166177;166178 166177 4 MEQVVIVDAIR Unmodified 1271.6908 0.69075746 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 38.008 36.405 2 1.8533E-07 17577 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.28 81.471 74687000 53183000 0 0 1128700 896900 1140500 0 0 0 0 0 0 2973100 3155400 0 0 0 0 4662500 4663700 2883000 0 0 0 14362 1168 13983 270605;270606;270607;270608;270609;270610;270611;270612;270613;270614 166179;166180 166180 2 MESIEQQLTELR Unmodified 1475.729 0.72899346 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.578 40.243 2 1.8116E-23 14206 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 239.31 218.44 276680000 19843000 17007000 21450000 0 0 0 17757000 20155000 20495000 0 0 0 22511000 17170000 24730000 8294900 7003500 7940800 19985000 25328000 27014000 0 0 0 14363 1102 13984 270615;270616;270617;270618;270619;270620;270621;270622;270623;270624;270625;270626;270627;270628;270629 166181;166182;166183;166184;166185;166186;166187;166188;166189 166183 8 MESLASLYK Unmodified 1040.5212 0.52123251 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.549 30.193 2 0.00069751 14645 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.56 74.225 1380100000 163910000 166500000 138020000 0 0 0 134700000 120590000 118630000 0 0 0 70726000 81546000 68619000 0 0 0 115890000 97005000 103980000 0 0 0 14364 1170 13985 270630;270631;270632;270633;270634;270635;270636;270637;270638;270639;270640;270641 166190;166191 166190 2 MESLLTLPLAGEAR Unmodified 1499.8018 0.80176447 890 P0AEW4 cpdA 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 50.491 49.112 2 2.6919E-07 23799 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 147.62 129.76 124630000 19714000 0 16371000 0 0 0 0 13430000 11712000 0 0 0 9802800 9721600 11150000 0 0 0 17074000 15654000 0 0 0 0 14365 890 13986 270642;270643;270644;270645;270646;270647;270648;270649;270650;270651;270652 166192;166193;166194;166195;166196;166197;166198;166199;166200 166194 9 MESLTLQPIAR Unmodified 1257.6751 0.67510739 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.213 32.937 2 7.4209E-06 15065 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 149.94 136.17 310580000 86128000 0 81529000 0 0 0 0 0 0 0 0 0 34194000 33296000 32758000 0 0 0 0 0 42674000 0 0 0 14366 232 13987 270653;270654;270655;270656;270657;270658;270659 166201;166202;166203;166204;166205 166204 5 MESPLGSDLAR Unmodified 1174.5652 0.56522259 466 P0A8W2 slyA Transcriptional regulator SlyA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.529 27.36 2 9.7492E-05 12684 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.33 119.7 485230000 66257000 47138000 42767000 0 0 333180 46726000 49146000 52722000 0 0 0 29586000 30531000 27635000 0 0 906150 31977000 31487000 28022000 0 0 0 14367 466 13988 270660;270661;270662;270663;270664;270665;270666;270667;270668;270669;270670;270671;270672;270673 166206;166207;166208;166209;166210;166211;166212;166213 166209 3 METDLQAK Unmodified 934.44298 0.44298219 888 P0AEU7 skp Chaperone protein Skp yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.299 13.905 2 0.00075373 4142 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 124.59 64.3 3894500000 328410000 316570000 294490000 7594500 8808400 8573300 290850000 334220000 328850000 86240000 72187000 64406000 246080000 282300000 233270000 48397000 29330000 42139000 263010000 249680000 240670000 40701000 39191000 38479000 14368 888 13989 270674;270675;270676;270677;270678;270679;270680;270681;270682;270683;270684;270685;270686;270687;270688;270689;270690;270691;270692;270693;270694;270695;270696;270697 166214;166215;166216;166217;166218;166219;166220;166221;166222;166223;166224;166225;166226;166227;166228;166229;166230;166231;166232 166221 18 METDLQAK Oxidation (M) 950.4379 0.43789681 888 P0AEU7 skp Chaperone protein Skp yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.603 12.183 2 0.0063839 3087 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 87.323 42.601 361570000 0 0 0 0 0 0 63060000 68475000 64880000 4649700 17015000 0 7349400 18340000 17014000 28071000 12286000 11093000 6968100 20517000 21853000 0 0 0 14369 888 13989 270698;270699;270700;270701;270702;270703;270704;270705;270706;270707;270708;270709;270710;270711 166233;166234;166235;166236 166235 407 3 METTKPSFQDVLEFVR Unmodified 1925.9557 0.95569893 446 P0A8M6 yeeX UPF0265 protein YeeX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 47.417 45.991 2;3 1.8704E-13 22169 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 187.11 181.27 2330200000 0 0 0 14289000 13733000 14406000 70371000 67253000 55591000 133650000 122910000 121540000 256330000 236250000 240850000 29773000 36993000 43633000 280410000 246220000 260380000 31652000 28766000 25220000 14370 446 13990 270712;270713;270714;270715;270716;270717;270718;270719;270720;270721;270722;270723;270724;270725;270726;270727;270728;270729;270730;270731;270732;270733;270734;270735;270736;270737;270738;270739;270740;270741;270742;270743;270744;270745 166237;166238;166239;166240;166241;166242;166243;166244;166245;166246;166247;166248;166249;166250;166251;166252;166253;166254;166255;166256;166257;166258;166259;166260;166261;166262;166263;166264;166265;166266;166267;166268;166269;166270 166260 32 METTKPSFQDVLEFVR Oxidation (M) 1941.9506 0.95061355 446 P0A8M6 yeeX UPF0265 protein YeeX yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 1 1 46.743 45.173 3 2.234E-10 22214 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143.97 140.58 276340000 19613000 21051000 15834000 0 0 0 25269000 25029000 27135000 12167000 12958000 9379400 18805000 17166000 14881000 0 0 0 16071000 18608000 16404000 4180300 1783400 0 14371 446 13990 270746;270747;270748;270749;270750;270751;270752;270753;270754;270755;270756;270757;270758;270759;270760;270761;270762;270763;270764;270765;270766;270767;270768;270769;270770;270771;270772;270773;270774;270775 166271;166272;166273;166274;166275;166276;166277;166278;166279;166280;166281;166282;166283;166284;166285;166286;166287 166274 216 16 METTQTSTIASK Unmodified 1296.6231 0.6231314 589 P0AAD6 sdaC Serine transporter yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.859 13.462 2 4.187E-08 3983 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.29 171.09 408600000 15034000 11929000 12964000 7636900 6120400 5022000 26672000 21366000 19757000 9194400 6921300 6827200 36010000 33416000 37606000 4996100 3404300 3784600 44758000 38563000 34768000 9560900 5845600 6445000 14372 589 13991 270776;270777;270778;270779;270780;270781;270782;270783;270784;270785;270786;270787;270788;270789;270790;270791;270792;270793;270794;270795;270796;270797;270798;270799 166288;166289;166290;166291;166292;166293;166294;166295;166296;166297;166298;166299;166300;166301;166302;166303;166304;166305;166306;166307;166308;166309;166310 166307 14 MEVAEVEALYR Unmodified 1308.6384 0.63838754 414 P0A8A4 ppsR Phosphoenolpyruvate synthase regulatory protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 37.668 36.627 2 0.00014568 17640 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.46 97.248 103440000 37578000 33069000 32090000 0 0 0 0 0 0 0 0 0 0 0 0 0 706270 0 0 0 0 0 0 0 14373 414 13992 270800;270801;270802;270803 166311;166312 166311 2 MEVFTAPGKPTVVVDYAHTPDALEK Unmodified 2714.3626 0.36255361 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 2 2 2 37.572 35.804 3;4 2.0736E-15 17222 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.14 131.95 1068600000 116640000 110390000 126620000 2097200 2233800 3368000 70886000 74896000 92935000 3045300 2334400 2109700 76359000 61315000 79589000 0 0 0 77084000 82669000 84015000 0 0 0 14374 1192 13993 270804;270805;270806;270807;270808;270809;270810;270811;270812;270813;270814;270815;270816;270817;270818;270819;270820;270821;270822;270823;270824;270825;270826;270827;270828;270829;270830;270831;270832;270833;270834 166313;166314;166315;166316;166317;166318;166319;166320;166321;166322 166321 10 MFAAVGNHVVELHR Unmodified 1578.8089 0.80891553 574 P0AA43 rsuA Ribosomal small subunit pseudouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 24.062 23.097 3;4 2.3365E-06 8591 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 106.13 105.34 262640000 57052000 44209000 36064000 5021000 5620300 5668400 15503000 10350000 0 3350700 11002000 4505400 7406600 6250300 4636000 0 0 0 11203000 8574300 9808300 5577400 4869100 5966100 14375 574 13994 270835;270836;270837;270838;270839;270840;270841;270842;270843;270844;270845;270846;270847;270848;270849;270850;270851;270852;270853;270854;270855;270856;270857;270858;270859;270860;270861;270862;270863;270864;270865;270866;270867;270868;270869;270870;270871;270872 166323;166324;166325;166326;166327;166328;166329;166330;166331;166332;166333;166334;166335 166323 13 MFAGLPSLTHEQQQK Unmodified 1713.8508 0.85083993 1711 P67338 yoaH UPF0181 protein YoaH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 2 2 2 1 2 2 30.573 29.165 2;3 1.42E-06 13570 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.74 119.74 629250000 86949000 134380000 63586000 0 0 0 30772000 35144000 32203000 1656800 0 0 53172000 47133000 50499000 0 0 0 4133000 49901000 39723000 0 0 0 14376 1711 13995 270873;270874;270875;270876;270877;270878;270879;270880;270881;270882;270883;270884;270885;270886;270887;270888;270889;270890;270891;270892;270893;270894;270895;270896 166336;166337;166338;166339;166340;166341;166342;166343;166344;166345;166346;166347;166348;166349 166341 13 MFCVQCEQTIR Unmodified 1470.6418 0.64177513 1780 P75825 hcp Hydroxylamine reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.444 26.215 2 5.0073E-05 12331 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.38 127.57 62036000 0 0 0 0 0 0 9141700 8271900 8980800 0 0 0 7340800 7495000 5352700 0 0 0 5506800 5514500 4431600 0 0 0 14377 1780 13996 270897;270898;270899;270900;270901;270902;270903;270904;270905 166350;166351;166352 166350 3 MFDGSSIGGWK Unmodified 1183.5332 0.53319418 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.224 34.506 2 2.8113E-05 16586 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.57 132.78 3036000000 398360000 416070000 374770000 1419300 1446300 1450000 156010000 159690000 163790000 1358300 0 2454800 216320000 190320000 191100000 0 0 0 228970000 264650000 264780000 0 1520200 1579500 14378 508 13997 270906;270907;270908;270909;270910;270911;270912;270913;270914;270915;270916;270917;270918;270919;270920;270921;270922;270923;270924 166353;166354;166355;166356;166357;166358;166359;166360;166361;166362;166363;166364 166357 9 MFDGSSIGGWK Oxidation (M) 1199.5281 0.5281088 508 P0A9C5 glnA Glutamine synthetase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 1 1 2 1 2 30.943 29.624 2 0.0013942 14032 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 72.643 69.072 96491000 14369000 14135000 14161000 0 0 0 2731000 0 11618000 0 0 0 0 7190800 4222500 0 0 0 9580900 7864100 10618000 0 0 0 14379 508 13997 270925;270926;270927;270928;270929;270930;270931;270932;270933;270934;270935;270936;270937;270938;270939;270940 166365;166366;166367;166368;166369;166370;166371 166365 312 3 MFDNLTDR Unmodified 1010.4491 0.4491302 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.201 25.949 2 2.6916E-06 9725 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 183.9 168.27 152420000 0 0 0 4411900 3561700 3130300 27269000 21944000 0 17006000 17225000 13513000 0 0 0 5431500 5083300 4440500 0 0 0 7397100 9327300 12684000 14380 1009 13998 270941;270942;270943;270944;270945;270946;270947;270948;270949;270950;270951;270952;270953;270954 166372;166373;166374;166375;166376;166377 166375 6 MFDSLDLIIAGFHEPVFAPHDK Unmodified 2498.2304 0.23041723 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.401 52.97 4 1.5138E-06 26275 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.884 88.122 638620000 74642000 93725000 71525000 0 2103200 2579600 36820000 33669000 30494000 0 0 0 39630000 50267000 55442000 0 0 0 50994000 46207000 50519000 0 0 0 14381 1789 13999 270955;270956;270957;270958;270959;270960;270961;270962;270963;270964;270965;270966;270967;270968 166378;166379;166380;166381;166382;166383;166384;166385;166386;166387 166382 10 MFDSTLNPLWQR Unmodified 1506.7289 0.72893388 1558 P42626 yhaM UPF0597 protein YhaM yes yes 0 0 0 By MS/MS 1 48.491 46.543 2 0.0022183 18649 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 77.677 67.446 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14382 1558 14000 270969 166388 166388 1 MFEINPVNNR Unmodified 1232.5972 0.59719142 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 1 1 1 31.172 29.849 2 1.5449E-06 13455 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 163.77 160.2 1521900000 135170000 129650000 117950000 0 0 0 90846000 92511000 89781000 0 0 0 137210000 136710000 125290000 0 0 0 151700000 158270000 156800000 0 0 0 14383 149 14001 270970;270971;270972;270973;270974;270975;270976;270977;270978;270979;270980;270981;270982;270983 166389;166390;166391;166392;166393;166394;166395;166396;166397;166398;166399;166400 166398 12 MFELYPEQR Unmodified 1211.5645 0.56449431 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 2 1 1 36.112 34.49 2 1.6488E-05 16500 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 157.86 150.64 2364000000 6725500 7615100 7293100 2855600 2707300 2756600 154770000 153510000 149300000 86917000 102320000 95081000 173210000 172490000 165390000 35576000 29419000 27123000 247320000 261940000 264070000 69162000 70799000 75635000 14384 594 14002 270984;270985;270986;270987;270988;270989;270990;270991;270992;270993;270994;270995;270996;270997;270998;270999;271000;271001;271002;271003;271004;271005;271006;271007;271008;271009;271010;271011 166401;166402;166403;166404;166405;166406;166407;166408;166409;166410;166411;166412;166413;166414;166415;166416;166417;166418;166419;166420 166415 18 MFELYPEQR Oxidation (M) 1227.5594 0.55940893 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 32.09 30.227 2 0.00026368 11708 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 125.96 121.35 67833000 0 0 0 0 0 0 8963900 9698100 0 6957000 4798100 3624600 0 0 0 0 0 0 9572900 9605900 10058000 2904300 1650900 0 14385 594 14002 271012;271013;271014;271015;271016;271017;271018;271019;271020;271021 166421;166422;166423;166424;166425 166422 343 3 MFENITAAPADPILGLADLFR Unmodified 2274.1718 0.17183972 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 1 2 2 1 1 2 1 2 2 2 55.837 54.354 2;3 5.0007E-10 27168 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.24 140.88 217460000 36361000 18130000 2507200 0 0 0 19867000 14241000 8550100 0 0 0 8794400 9357300 9205000 0 0 0 31920000 29943000 28581000 0 0 0 14386 31 14003 271022;271023;271024;271025;271026;271027;271028;271029;271030;271031;271032;271033;271034;271035;271036;271037;271038;271039;271040;271041 166426;166427 166426 2 MFEPMELTNDAVIK Unmodified 1636.7841 0.7840655 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 46.995 45.606 2;3 1.7071E-06 18621 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 118.37 116 2031400000 177730000 164130000 166100000 20806000 22462000 2704600 102670000 86712000 105070000 72184000 79681000 80536000 126190000 116040000 113920000 16133000 12748000 7298100 154930000 159950000 149710000 31723000 32861000 29100000 14387 502 14004 271042;271043;271044;271045;271046;271047;271048;271049;271050;271051;271052;271053;271054;271055;271056;271057;271058;271059;271060;271061;271062;271063;271064;271065;271066;271067;271068;271069;271070;271071;271072;271073;271074;271075;271076;271077;271078;271079;271080;271081;271082;271083;271084;271085;271086 166428;166429;166430;166431;166432;166433;166434;166435;166436;166437;166438;166439;166440;166441;166442;166443;166444;166445;166446;166447;166448 166431 20 MFEPMELTNDAVIK Oxidation (M) 1652.779 0.77898012 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.611 41.824 2 0.0003421 17020 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.979 77.877 83182000 11237000 8113100 3525800 469450 601170 0 6956400 5964600 6093700 4144600 3349700 2123200 0 3790200 0 0 0 0 4635500 10663000 9768600 808720 937540 0 14388 502 14004 271087;271088;271089;271090;271091;271092;271093;271094;271095;271096;271097;271098;271099;271100;271101;271102;271103 166449 166449 305 1 MFFKEDWIPK Unmodified 1339.6635 0.66348007 929 P0AFD4 nuoH NADH-quinone oxidoreductase subunit H yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.368 37.712 3 0.04885 14782 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 41.08 39.661 93829000 2646500 0 0 1615800 1827500 2150100 6714500 4820100 5499200 0 7324500 6679600 5135900 4961300 4599700 3315800 1515500 0 7286400 6158900 6593600 5233700 4692600 5057300 14389 929 14005 271104;271105;271106;271107;271108;271109;271110;271111;271112;271113;271114;271115;271116;271117;271118;271119;271120;271121;271122;271123 166450;166451;166452;166453;166454;166455;166456;166457 166452 8 MFIGFDYGTANCSVAVMR Unmodified 2037.9111 0.9110737 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 50.12 49.113 2 3.5704E-29 19459 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 215.85 206.66 35638000 3657800 0 0 0 0 0 0 0 0 1470000 1719300 1887100 0 0 0 3808700 1196900 1337000 0 0 0 5999400 7792300 6769800 14390 1448 14006 271124;271125;271126;271127;271128;271129;271130;271131;271132;271133 166458;166459;166460;166461 166461 4 MFIVGKPTIMGER Unmodified 1477.7785 0.77852661 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 2 2 2 2 2 2 1 1 32.467 31.084 2;3 5.3798E-06 14106 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 95.417 95.01 1377100000 132450000 144690000 151180000 0 0 0 83262000 79172000 83093000 0 1920600 0 104060000 95047000 94200000 0 0 0 139550000 136870000 127850000 2681300 1027400 0 14391 829 14007 271134;271135;271136;271137;271138;271139;271140;271141;271142;271143;271144;271145;271146;271147;271148;271149;271150;271151;271152;271153;271154;271155;271156;271157 166462;166463;166464;166465;166466;166467;166468;166469;166470;166471;166472;166473;166474;166475;166476;166477;166478;166479;166480;166481 166476 20 MFKGEPLPLLSQVAER Unmodified 1813.976 0.97604044 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 42.109 40.362 3 1.2135E-06 19690 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 85.473 83.111 70759000 0 0 0 456410 0 0 6066100 4714400 5219200 0 0 0 4831900 6254400 4700800 0 0 0 12845000 15024000 10647000 0 0 0 14392 1065 14008 271158;271159;271160;271161;271162;271163;271164;271165;271166;271167 166482;166483;166484 166482 3 MFKPELLSPAGTLK Unmodified 1530.848 0.84798638 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 35.258 33.75 2;3 9.2568E-06 15948 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 77.42 75.741 760620000 62504000 62905000 51625000 0 1140000 943560 55910000 53552000 49981000 0 0 0 57462000 60832000 63946000 0 0 0 82513000 80216000 75337000 0 0 1753400 14393 1856 14009 271168;271169;271170;271171;271172;271173;271174;271175;271176;271177;271178;271179;271180;271181;271182;271183;271184;271185;271186;271187;271188;271189;271190;271191;271192;271193;271194 166485;166486;166487;166488;166489;166490;166491;166492 166488 6 MFLAQEIIR Unmodified 1119.6111 0.61105057 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.036 40.16 2 3.6592E-05 19991 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 152.47 143.53 1827000000 72175000 75044000 66452000 0 0 0 220110000 237390000 211140000 1377200 1456900 1197000 153020000 136430000 152940000 0 0 0 184210000 169430000 144630000 0 0 0 14394 167 14010 271195;271196;271197;271198;271199;271200;271201;271202;271203;271204;271205;271206;271207;271208;271209 166493;166494;166495;166496;166497;166498;166499;166500;166501;166502;166503;166504 166494 12 MFLAQEIIR Oxidation (M) 1135.606 0.6059652 167 P07650 deoA Thymidine phosphorylase yes yes 0 1 0 By MS/MS By MS/MS 1 1 37.67 35.492 2 0.051337 17674 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 51.193 47.784 8271800 0 0 0 0 0 0 3821200 4450500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14395 167 14010 271210;271211 166505;166506 166505 0 MFLPQVVK Unmodified 960.54666 0.5466594 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.273 34.495 2 0.0086264 13986 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 81.381 71.394 177980000 21503000 16678000 16977000 3467500 2791900 3097100 9334000 6420600 7890800 5251200 5103200 5796400 8427100 8399600 7809600 0 0 0 14239000 14988000 11897000 2412600 3128100 2365000 14396 1083 14011 271212;271213;271214;271215;271216;271217;271218;271219;271220;271221;271222;271223;271224;271225;271226;271227;271228;271229;271230;271231;271232 166507;166508;166509;166510;166511;166512;166513;166514;166515;166516;166517;166518;166519 166507 11 MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLK Unmodified 3757.7966 0.79657911 800 P0ADQ7 ygaM Uncharacterized protein YgaM yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.121 53.694 4 6.0826E-34 19752 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 197.81 196.36 441140000 0 0 0 74933000 75039000 63734000 0 0 0 50903000 58362000 57763000 0 0 0 0 0 0 0 0 0 21862000 19561000 18982000 14397 800 14012 271233;271234;271235;271236;271237;271238;271239;271240;271241 166520;166521;166522;166523;166524;166525 166524 6 MFNSDNLR Unmodified 995.44946 0.44946455 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.647 20.137 2 6.6301E-05 7667 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 167.82 142 1734400000 262210000 245250000 249010000 0 0 0 244680000 227380000 226480000 0 0 0 46995000 40996000 40697000 0 0 0 49130000 52565000 49014000 0 0 0 14398 886 14013 271242;271243;271244;271245;271246;271247;271248;271249;271250;271251;271252;271253 166526;166527;166528;166529;166530;166531;166532;166533;166534;166535;166536;166537 166533 12 MFNSDNLR Oxidation (M) 1011.4444 0.44437918 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 1 0 By matching By matching By MS/MS 1 1 1 15.635 16.271 2 0.10103 5670 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 45.081 41.89 9750400 2642800 0 0 0 0 0 3392900 3714700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14399 886 14013 271254;271255;271256 166538 166538 0 MFNTAFDALGAK Unmodified 1284.6173 0.61725816 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.762 39.096 2 2.9776E-05 18842 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.27 120.79 345460000 58956000 56778000 53194000 0 0 0 31910000 33156000 35229000 0 0 0 11448000 11938000 10602000 0 0 0 13625000 17118000 11510000 0 0 0 14400 1557 14014 271257;271258;271259;271260;271261;271262;271263;271264;271265;271266;271267;271268 166539;166540;166541;166542;166543;166544;166545;166546;166547;166548;166549;166550 166547 12 MFPQILVNVR Unmodified 1215.6798 0.67979884 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 45.823 44.286 2 0.00015677 21351 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.25 122.98 788340000 59958000 55470000 53486000 0 0 0 61230000 54146000 52995000 964150 0 0 69459000 64954000 68988000 0 0 0 78637000 87475000 80577000 0 0 0 14401 1360 14015 271269;271270;271271;271272;271273;271274;271275;271276;271277;271278;271279;271280;271281 166551;166552;166553;166554;166555;166556;166557;166558;166559;166560;166561;166562;166563 166557 13 MFPQILVNVR Oxidation (M) 1231.6747 0.67471346 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 1 0 By MS/MS 1 43.128 40.977 2 0.090266 20466 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 40.045 35.842 4724900 0 0 0 0 0 0 0 4724900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14402 1360 14015 271282 166564 166564 0 MFQDNPLLAQLK Unmodified 1416.7435 0.74352131 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.938 44.464 2 3.0417E-06 21526 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 137.95 133.26 729110000 73236000 78913000 76424000 0 872980 1324700 44138000 44370000 47141000 0 0 0 50368000 47052000 53242000 0 0 0 69828000 70619000 71583000 0 0 0 14403 1348 14016 271283;271284;271285;271286;271287;271288;271289;271290;271291;271292;271293;271294;271295;271296 166565;166566;166567;166568;166569;166570;166571;166572;166573;166574;166575;166576 166570 12 MFQLSVQDIHPGEK Unmodified 1627.8028 0.8028271 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 34.101 32.59 2;3 4.564E-06 15524 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 144.55 140.96 843220000 81163000 78400000 72922000 5146400 6387600 5477400 51015000 54542000 43308000 3266100 2473100 3168200 76365000 63747000 63833000 0 1282000 1549500 64930000 76192000 79004000 3516700 2842200 2687800 14404 1748 14017 271297;271298;271299;271300;271301;271302;271303;271304;271305;271306;271307;271308;271309;271310;271311;271312;271313;271314;271315;271316;271317;271318;271319;271320;271321;271322;271323;271324;271325;271326;271327;271328;271329;271330;271331;271332;271333;271334 166577;166578;166579;166580;166581;166582;166583;166584;166585;166586;166587;166588;166589;166590;166591;166592;166593;166594;166595;166596 166585 18 MFQQEVTITAPNGLHTR Oxidation (M) 1957.968 0.96799495 568 P0AA04 ptsH Phosphocarrier protein HPr yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 28.13 26.913 3 5.9931E-07 11882 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 105.06 100.06 264250000 0 14587000 0 0 0 0 36836000 35801000 30448000 0 0 0 20908000 20536000 26035000 0 0 0 30010000 28756000 20331000 0 0 0 14405 568 14018 271335;271336;271337;271338;271339;271340;271341;271342;271343;271344 166597;166598;166599;166600;166601;166602;166603;166604;166605;166606 166605 340 10 MFQQEVTITAPNGLHTR Unmodified 1941.9731 0.97308033 568 P0AA04 ptsH Phosphocarrier protein HPr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 4 1 1 4 2 3 2 3 3 31.304 29.863 2;3;4 3.1723E-31 13614 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 289.45 276.95 11108000000 669020000 656290000 646710000 2673000 2568000 1784500 1062800000 961690000 1036400000 0 1218000 1710500 1130300000 917820000 887540000 0 0 0 1023600000 1106200000 999760000 0 0 0 14406 568 14018 271345;271346;271347;271348;271349;271350;271351;271352;271353;271354;271355;271356;271357;271358;271359;271360;271361;271362;271363;271364;271365;271366;271367;271368;271369;271370;271371;271372;271373;271374;271375;271376;271377;271378;271379;271380;271381;271382;271383;271384 166607;166608;166609;166610;166611;166612;166613;166614;166615;166616;166617;166618;166619;166620;166621;166622;166623;166624;166625;166626;166627;166628;166629;166630;166631;166632;166633 166624 26 MFQQEVTITAPNGLHTRPAAQFVK Unmodified 2683.3904 0.39044012 568 P0AA04 ptsH Phosphocarrier protein HPr yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 2 2 2 1 1 2 1 1 1 1 1 1 1 32.804 31.251 3;4 2.7427E-10 14979 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 125.58 124.7 669690000 11721000 12595000 75307000 6644200 6387000 9481300 104740000 109230000 116720000 4283000 2547700 0 109050000 14403000 12491000 0 0 0 21021000 17679000 25869000 4025200 5488500 0 14407 568 14019 271385;271386;271387;271388;271389;271390;271391;271392;271393;271394;271395;271396;271397;271398;271399;271400;271401;271402;271403;271404;271405;271406;271407;271408 166634;166635;166636;166637;166638;166639;166640;166641;166642;166643;166644;166645;166646;166647;166648;166649 166639 16 MFRSQVAPR Unmodified 1090.5706 0.57058274 1547 P39838 rcsD Phosphotransferase RcsD yes yes 0 0 1 By MS/MS By matching 1 1 14.343 15.174 3 0.12794 4993 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 31.074 16.407 2829900 0 0 1089200 0 0 0 0 0 0 0 0 0 0 0 1740700 0 0 0 0 0 0 0 0 0 14408 1547 14020 271409;271410 166650 166650 0 MFSNTEELLPVISFNAK Unmodified 1938.9761 0.97610002 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 1 2 1 1 1 1 1 53.795 52.367 2;3 4.8859E-31 25580 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 232.78 229.73 509370000 115930000 108470000 108020000 0 0 0 34908000 38373000 37129000 0 0 0 14627000 11486000 9217100 0 0 0 11199000 9043200 10974000 0 0 0 14409 757 14021 271411;271412;271413;271414;271415;271416;271417;271418;271419;271420;271421;271422;271423;271424;271425;271426 166651;166652;166653;166654;166655;166656;166657;166658;166659 166659 9 MFSVDPATHLAR Unmodified 1343.6656 0.66560534 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.624 26.476 3 1.017E-05 12452 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 120.86 119.6 450900000 39861000 37782000 32356000 0 0 0 39186000 27171000 38610000 0 0 0 34273000 41209000 29636000 0 0 0 44923000 47333000 38554000 0 0 0 14410 1548 14022 271427;271428;271429;271430;271431;271432;271433;271434;271435;271436;271437;271438 166660;166661;166662 166661 3 MFTGIVQGTAK Unmodified 1151.6009 0.60087982 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.613 25.533 2 4.3542E-06 10926 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 153.24 145.57 1461300000 168420000 162950000 149530000 0 0 0 104530000 106220000 119190000 0 0 0 103460000 105650000 100740000 0 0 0 111800000 110950000 117910000 0 0 0 14411 963 14023 271439;271440;271441;271442;271443;271444;271445;271446;271447;271448;271449;271450 166663;166664;166665;166666;166667;166668;166669;166670;166671;166672;166673 166673 9 MFTGSIVAIVTPMDEK Unmodified 1737.8681 0.86812948 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.172 49.915 2;3 2.7656E-14 24713 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 222.25 221.99 1427500000 108470000 81046000 91309000 0 0 0 124790000 128480000 114850000 0 0 0 129870000 130950000 121430000 0 0 0 132940000 132710000 130680000 0 0 0 14412 258 14024 271451;271452;271453;271454;271455;271456;271457;271458;271459;271460;271461;271462;271463;271464;271465;271466;271467;271468;271469;271470;271471;271472;271473;271474 166674;166675;166676;166677;166678;166679;166680;166681;166682;166683;166684;166685;166686;166687;166688;166689;166690;166691;166692;166693;166694 166674 21 MFTHNPELK Unmodified 1115.5434 0.54336494 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 14.115 15.01 2 0.055497 4565 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 52.482 27.706 94276000 13904000 15342000 0 0 0 0 0 0 0 0 0 0 22574000 19953000 22503000 0 0 0 0 0 0 0 0 0 14413 1246 14025 271475;271476;271477;271478;271479 166695;166696;166697 166695 3 MFTINAEVR Unmodified 1079.5434 0.54336494 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 31.674 30.3 2 7.1648E-06 9856 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 170.66 152.63 3311100000 409260000 453260000 332160000 21473000 20802000 21089000 152450000 136580000 151480000 36324000 29951000 29411000 182460000 168920000 153650000 19777000 13086000 13514000 278600000 288000000 292380000 33290000 35757000 37472000 14414 1726 14026 271480;271481;271482;271483;271484;271485;271486;271487;271488;271489;271490;271491;271492;271493;271494;271495;271496;271497;271498;271499;271500;271501;271502;271503;271504;271505;271506;271507 166698;166699;166700;166701;166702;166703;166704;166705;166706;166707;166708;166709;166710;166711;166712;166713;166714;166715;166716;166717;166718;166719;166720;166721 166700 20 MFTINAEVR Oxidation (M) 1095.5383 0.53827956 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.398 26.16 2 0.015631 11861 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 63.419 54.955 70380000 11554000 0 9106400 0 0 0 5914500 0 5289100 1230500 0 0 6160100 3590900 4622700 0 0 0 7909500 8268400 6733800 0 0 0 14415 1726 14026 271508;271509;271510;271511;271512;271513;271514;271515;271516;271517;271518 166722;166723 166722 592 0 MFTINAEVRK Unmodified 1207.6383 0.63832796 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 22.598 21.94 3 0.014053 7259 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 57.174 41.797 57497000 0 0 0 0 0 8240000 0 0 0 5715800 6965400 5348800 0 0 0 0 0 316870 0 0 0 10522000 10423000 9965700 14416 1726 14027 271519;271520;271521;271522;271523;271524;271525;271526 166724;166725 166725 2 MFVCSDTDYCR Unmodified 1452.5472 0.54720604 1128 P16688 phnJ Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 25.204 24.238 2 1.7583E-05 10844 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.98 138.98 32821000 0 0 0 0 0 0 0 0 0 0 0 0 3863100 4362300 3884700 0 0 0 6234200 9319900 5157300 0 0 0 14417 1128 14028 271527;271528;271529;271530;271531;271532 166726;166727;166728 166727 3 MGADETR Unmodified 778.32795 0.32795243 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 1 1 1 1 1 8.7948 9.5972 2 0.0015294 2337 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.38 120.97 250350000 83281000 54330000 31173000 0 0 0 18044000 16402000 16026000 0 0 0 4033300 3461000 0 0 0 0 8449100 7815600 7337800 0 0 0 14418 1258 14029 271533;271534;271535;271536;271537;271538;271539;271540;271541;271542;271543;271544;271545 166729;166730;166731;166732;166733;166734;166735 166735 7 MGAEAIQALLK Oxidation (M) 1159.6271 0.62709457 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 2 1 2 4 4 4 1 2 2 4 4 4 2 1 2 4 4 3 38.268 36.712 2 4.9206E-10 14043 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 182.98 135.41 2054700000 6461000 10757000 9240000 859550 1105800 848110 11575000 5123000 8712800 186590000 176880000 144140000 1808000 3739100 5502800 327260000 272650000 274390000 9864200 3837500 9123700 195920000 195100000 193240000 14419 458 14030 271546;271547;271548;271549;271550;271551;271552;271553;271554;271555;271556;271557;271558;271559;271560;271561;271562;271563;271564;271565;271566;271567;271568;271569;271570;271571;271572;271573;271574;271575;271576;271577;271578;271579;271580;271581;271582;271583;271584;271585;271586;271587;271588;271589;271590;271591;271592;271593;271594;271595;271596;271597;271598;271599;271600;271601;271602;271603;271604 166736;166737;166738;166739;166740;166741;166742;166743;166744;166745;166746;166747;166748;166749;166750;166751;166752;166753;166754;166755;166756;166757;166758;166759;166760;166761;166762;166763;166764;166765;166766;166767;166768;166769;166770;166771;166772;166773;166774;166775;166776;166777;166778;166779;166780;166781;166782;166783;166784;166785;166786;166787;166788;166789;166790;166791;166792;166793;166794;166795;166796;166797;166798;166799;166800 166780 241 63 MGAEAIQALLK Unmodified 1143.6322 0.63217995 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4 7 5 1 1 1 10 7 13 1 1 1 10 7 5 45.422 44.103 2;3 4.0215E-10 14425 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 152.34 119.08 46729000000 357790000 354860000 313310000 21529000 20465000 23666000 302580000 263500000 235420000 2834700000 2756700000 2993800000 294990000 268850000 276520000 10165000000 13366000000 31753000 367880000 411050000 389530000 3508400000 3633800000 3536100000 14420 458 14030 271605;271606;271607;271608;271609;271610;271611;271612;271613;271614;271615;271616;271617;271618;271619;271620;271621;271622;271623;271624;271625;271626;271627;271628;271629;271630;271631;271632;271633;271634;271635;271636;271637;271638;271639;271640;271641;271642;271643;271644;271645;271646;271647;271648;271649;271650;271651;271652;271653;271654;271655;271656;271657;271658;271659;271660;271661;271662;271663;271664;271665;271666;271667;271668;271669;271670;271671;271672;271673;271674;271675;271676;271677;271678;271679;271680;271681;271682;271683;271684;271685;271686;271687 166801;166802;166803;166804;166805;166806;166807;166808;166809;166810;166811;166812;166813;166814;166815;166816;166817;166818;166819;166820;166821;166822;166823;166824;166825;166826;166827;166828;166829;166830;166831;166832;166833;166834;166835;166836;166837;166838;166839;166840;166841;166842;166843;166844;166845;166846;166847;166848;166849;166850;166851;166852;166853;166854;166855;166856;166857;166858;166859;166860;166861;166862;166863;166864;166865;166866;166867;166868;166869;166870;166871;166872;166873;166874;166875;166876;166877;166878;166879;166880;166881;166882;166883;166884;166885;166886;166887;166888;166889;166890;166891;166892;166893;166894;166895;166896 166833 92 MGAHAEIESNTVICHGVEK Unmodified 2080.967 0.96700867 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 1 17.424 18.06 3;4 6.9353E-18 6672 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 129.05 119.4 539530000 32305000 34098000 25413000 0 0 0 67434000 66926000 54195000 0 0 0 34679000 40745000 44117000 0 277130 0 44768000 49643000 43501000 0 1429600 0 14421 311 14031 271688;271689;271690;271691;271692;271693;271694;271695;271696;271697;271698;271699;271700;271701;271702;271703;271704;271705;271706;271707;271708;271709;271710;271711;271712;271713 166897;166898;166899;166900;166901;166902;166903;166904;166905;166906;166907;166908;166909;166910;166911;166912 166899 16 MGANFLK Oxidation (M) 795.39491 0.39490979 264 P0A6M8 fusA Elongation factor G yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 2 1 2 2 2 2 1 2 2 2 2 16.88 17.614 2 0.020492 6532 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 81.1 38.053 318410000 12064000 19147000 9065800 0 0 0 43956000 40926000 36569000 0 0 0 23327000 20607000 25067000 0 0 0 29719000 28809000 29149000 0 0 0 14422 264 14032 271714;271715;271716;271717;271718;271719;271720;271721;271722;271723;271724;271725;271726;271727;271728;271729;271730;271731;271732;271733;271734 166913;166914;166915;166916 166914 117 4 MGANFLK Unmodified 779.4 0.39999517 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 1 22.426 21.953 2 0.017341 9047 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.833 32.788 11665000000 1002000000 1031300000 922590000 12386000 9222600 11280000 975360000 804730000 749590000 0 7604300 11218000 899860000 827760000 776330000 7357400 7705000 6311100 1180100000 1194400000 1207300000 10535000 0 10229000 14423 264 14032 271735;271736;271737;271738;271739;271740;271741;271742;271743;271744;271745;271746;271747;271748;271749;271750;271751;271752;271753;271754;271755;271756;271757;271758;271759 166917;166918;166919;166920;166921;166922;166923;166924;166925;166926 166922 10 MGAQVVELGPVNATIHK Unmodified 1762.94 0.93998929 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.714 30.366 2;3 7.9311E-08 14334 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 111.22 111.22 526350000 35266000 34278000 38864000 0 0 0 51140000 43261000 36519000 0 0 0 34026000 31488000 34480000 0 0 0 57797000 64804000 64426000 0 0 0 14424 849 14033 271760;271761;271762;271763;271764;271765;271766;271767;271768;271769;271770;271771;271772;271773;271774;271775;271776;271777;271778;271779;271780;271781;271782;271783 166927;166928;166929;166930;166931;166932;166933;166934;166935;166936;166937 166930 11 MGATDQLSK Unmodified 949.45388 0.45388123 1103 P15047 entA 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 12.672 13.577 2 0.00085803 4082 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.069 44.698 44285000 0 0 0 0 0 0 0 8691700 0 0 0 0 0 8820500 0 0 0 0 0 26773000 0 0 0 0 14425 1103 14034 271784;271785;271786;271787;271788 166938;166939;166940 166938 3 MGATICWGDDYISCTR Unmodified 1904.7855 0.78553883 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.023 40.324 2 0.02935 18848 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 53.252 53.252 66670000 5896900 6355700 4528900 0 0 0 4986300 5083100 4673500 0 0 0 5812700 5147100 4582100 0 0 0 7495000 5988100 6120900 0 0 0 14426 232 14035 271789;271790;271791;271792;271793;271794;271795;271796;271797;271798;271799;271800 166941;166942;166943;166944;166945;166946 166946 0 MGAYAIDLLLAGYGGR Unmodified 1639.8392 0.83921261 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.756 53.308 2;3 1.0894E-30 26439 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 234.39 229.45 3221300000 272480000 266570000 269470000 0 0 0 308000000 296870000 313030000 0 0 0 271720000 263740000 266040000 0 0 0 222720000 250340000 220320000 0 0 0 14427 320 14036 271801;271802;271803;271804;271805;271806;271807;271808;271809;271810;271811;271812;271813;271814;271815;271816;271817;271818;271819;271820;271821;271822;271823;271824 166947;166948;166949;166950;166951;166952;166953;166954;166955;166956;166957;166958;166959;166960;166961;166962;166963;166964;166965;166966;166967;166968;166969 166949 23 MGDPLVLTFGK Unmodified 1176.6213 0.62128091 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By matching 1 1 45.758 44.032 2 0.029325 15705 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 57.785 51.472 15769000 0 0 0 10180000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5589300 0 0 14428 1904 14037 271825;271826 166970 166970 0 MGDQLSTAK Unmodified 949.45388 0.45388123 1734 P69451 fadD Long-chain-fatty-acid--CoA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.411 13.181 2 0.09651 3156 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 49.715 26.644 94779000 19185000 16788000 19159000 0 0 990360 0 5179900 5417400 0 1627600 1500700 0 3582000 2700400 0 0 0 5499200 6182000 6967400 0 0 0 14429 1734 14038 271827;271828;271829;271830;271831;271832;271833;271834;271835;271836;271837;271838;271839 166971 166971 0 MGDTLPMPTK Unmodified 1089.5199 0.5198523 1894 P77304 dtpA Dipeptide and tripeptide permease A yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 26.215 25.092 2 0.00070245 11319 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.047 76.07 53561000 0 0 0 0 0 787430 5332200 0 6770600 0 0 0 7828500 4599500 4230900 0 0 0 9764600 6758000 7489700 0 0 0 14430 1894 14039 271840;271841;271842;271843;271844;271845;271846;271847;271848 166972;166973;166974 166972 3 MGEIIIDAK Unmodified 988.52632 0.52631789 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.862 27.544 2 0.00086921 13094 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 99.139 86.091 1914300000 123130000 115410000 90531000 1119100 0 1188500 204630000 218430000 199180000 2268100 2466400 2371000 156700000 153960000 150580000 791100 0 669820 162120000 162970000 164840000 0 0 995390 14431 1437 14040 271849;271850;271851;271852;271853;271854;271855;271856;271857;271858;271859;271860;271861;271862;271863;271864;271865;271866;271867;271868 166975;166976;166977;166978;166979;166980;166981;166982;166983;166984;166985;166986 166976 8 MGEIVTDR Unmodified 919.44332 0.44331654 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.548 17.306 2 0.00071969 6170 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 126.04 109.49 636280000 43453000 40601000 41796000 0 0 0 50102000 53578000 44226000 0 0 0 63561000 64994000 50510000 0 0 0 59303000 63312000 60846000 0 0 0 14432 124 14041 271869;271870;271871;271872;271873;271874;271875;271876;271877;271878;271879;271880 166987;166988;166989;166990;166991;166992;166993;166994;166995;166996;166997;166998 166989 12 MGEIVTDRLEENFR Unmodified 1707.825 0.82501911 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.814 33.333 3 1.2871E-14 15930 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 154.47 152.17 195470000 9747900 6298300 7109100 0 0 0 11414000 13143000 13144000 5697300 5598400 3846200 10643000 10099000 9892300 9103800 8392400 8568000 13537000 15913000 13340000 6254800 7989500 5738200 14433 124 14042 271881;271882;271883;271884;271885;271886;271887;271888;271889;271890;271891;271892;271893;271894;271895;271896;271897;271898;271899;271900;271901 166999;167000;167001;167002;167003;167004 167003 6 MGELMAESHASMR Unmodified 1448.621 0.62103969 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 1 1 1 1 2 18.951 19.495 2;3 2.552E-07 7330 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.07 148.81 203390000 32476000 39686000 24663000 0 0 0 6457200 30281000 23234000 0 0 0 8365900 6932500 6651000 0 0 0 7376400 8061100 9205800 0 0 0 14434 278 14043 271902;271903;271904;271905;271906;271907;271908;271909;271910;271911;271912;271913;271914;271915;271916;271917;271918;271919;271920 167005;167006;167007;167008;167009;167010;167011;167012 167011 6 MGEVYWAEYQR Unmodified 1430.6289 0.62888548 1844 P76256 tsaB tRNA threonylcarbamoyladenosine biosynthesis protein TsaB yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.413 33.857 2 2.4586E-05 16141 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.25 130.23 240220000 13750000 16237000 14820000 0 0 0 18563000 19381000 15322000 0 0 0 23305000 21231000 20367000 0 0 0 25768000 23754000 27718000 0 0 0 14435 1844 14044 271921;271922;271923;271924;271925;271926;271927;271928;271929;271930;271931;271932 167013;167014;167015;167016;167017;167018;167019;167020 167016 7 MGFAIAAAAAR Unmodified 1048.5488 0.54878467 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 32.402 30.966 2 0.0027935 14050 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 69.423 63.32 208770000 28533000 4385300 0 0 0 0 22305000 21175000 20875000 0 0 0 18798000 16644000 16629000 0 0 0 20230000 18949000 16679000 2166900 1397500 0 14436 670 14045 271933;271934;271935;271936;271937;271938;271939;271940;271941;271942;271943;271944;271945 167021;167022 167021 0 MGFALVVVTNQSGIAR Unmodified 1661.8923 0.89231081 1659 P63228 gmhB D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase yes yes 0 0 0 By MS/MS By matching 1 1 47.753 45.976 2 4.0808E-06 22843 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.146 84.832 6959000 0 0 0 0 0 0 3092800 3866200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14437 1659 14046 271946;271947 167023 167023 0 MGFETILPLR Unmodified 1175.6373 0.63726532 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 49.592 48.226 2 0.00014298 23539 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 126.52 126.52 106280000 4631600 5914200 3750800 0 0 0 4158600 0 4718500 0 0 0 12626000 10485000 11622000 0 0 0 11707000 16783000 19879000 0 0 0 14438 1070 14047 271948;271949;271950;271951;271952;271953;271954;271955;271956;271957;271958 167024;167025;167026;167027;167028;167029 167024 6 MGFGATR Unmodified 738.34829 0.34829395 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.317 15.891 2 0.0012711 5267 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.96 132.96 3520200000 364550000 499580000 517770000 15893000 14454000 14239000 171180000 149240000 163910000 32744000 0 35263000 221300000 205970000 187790000 17707000 14669000 15842000 288090000 282510000 248610000 21512000 19430000 17930000 14439 375 14048 271959;271960;271961;271962;271963;271964;271965;271966;271967;271968;271969;271970;271971;271972;271973;271974;271975;271976;271977;271978;271979;271980;271981 167030;167031;167032;167033;167034;167035;167036;167037;167038;167039;167040;167041;167042;167043;167044;167045;167046 167043 17 MGFGATR Oxidation (M) 754.34321 0.34320857 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.914 12.761 2 0.06364 3457 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 61.561 61.561 232280000 33178000 21582000 21501000 7399900 5945600 6542600 14763000 16528000 15658000 0 0 0 9875000 10522000 10899000 0 0 0 18766000 16801000 20169000 0 0 2151300 14440 375 14048 271982;271983;271984;271985;271986;271987;271988;271989;271990;271991;271992;271993;271994;271995;271996;271997 167047;167048;167049 167049 1 MGFLSGK Unmodified 738.37345 0.37344606 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.819 22.242 1;2 0.007515 9862 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.986 71.139 1164800000 58386000 49401000 49019000 0 0 0 63651000 50613000 64868000 0 0 0 141740000 114620000 114620000 0 0 0 156840000 129750000 171320000 0 0 0 14441 869 14049 271998;271999;272000;272001;272002;272003;272004;272005;272006;272007;272008;272009;272010;272011;272012;272013;272014;272015;272016;272017;272018;272019;272020;272021 167050;167051;167052;167053;167054;167055;167056;167057;167058;167059 167051 9 MGFNNLGVDNLVENVKK Unmodified 1889.9669 0.96693232 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 39.95 38.23 3 7.5939E-05 13483 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 76.341 72.68 27648000 0 0 0 9585400 9831700 8230500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14442 335 14050 272022;272023;272024 167060;167061;167062 167061 3 MGGFNLK Unmodified 765.38435 0.3843451 483 P0A917 ompX Outer membrane protein X yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 2 2 1 1 1 1 1 2 1 1 1 2 2 2 22.148 21.838 1;2 0.014265 7766 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 82.939 82.939 395760000 0 0 0 23456000 1412800 1527300 0 12961000 0 31249000 64287000 56084000 10753000 8843300 8329200 11427000 7876500 9027300 16420000 14283000 12537000 34883000 31085000 39319000 14443 483 14051 272025;272026;272027;272028;272029;272030;272031;272032;272033;272034;272035;272036;272037;272038;272039;272040;272041;272042;272043;272044;272045;272046;272047;272048;272049 167063;167064;167065;167066;167067 167064 4 MGHAGAIIAGGK Oxidation (M) 1097.5652 0.56516301 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 2 2 1 2 1 11.374 12.22 2;3 1.6002E-06 3272 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.65 130.67 670310000 50181000 92445000 79984000 0 0 0 40960000 51042000 50730000 0 0 0 46064000 33785000 34402000 0 0 0 54591000 89163000 46966000 0 0 0 14444 1013 14052 272050;272051;272052;272053;272054;272055;272056;272057;272058;272059;272060;272061;272062;272063;272064;272065;272066;272067;272068;272069 167068;167069;167070;167071;167072;167073;167074;167075;167076;167077 167074 462 10 MGHAGAIIAGGK Unmodified 1081.5702 0.57024839 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 3 3 2 12.371 13.251 2;3 1.4024E-10 3777 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 133.86 118.23 7700200000 895040000 583400000 565930000 2742100 3061200 865940 394530000 203920000 441380000 0 0 0 477530000 471390000 514780000 0 0 0 1082000000 1014600000 1049000000 0 0 0 14445 1013 14052 272070;272071;272072;272073;272074;272075;272076;272077;272078;272079;272080;272081;272082;272083;272084;272085;272086;272087;272088;272089;272090;272091;272092;272093;272094;272095;272096;272097;272098;272099;272100 167078;167079;167080;167081;167082;167083;167084;167085;167086;167087;167088;167089;167090;167091;167092;167093;167094;167095;167096;167097;167098;167099;167100;167101 167081 24 MGHIELASPTAHIWFLK Oxidation (M) 1966.0135 0.01348858 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 3 1 1 1 9 8 7 2 1 1 9 8 7 2 2 3 8 6 7 41.056 39.516 2;3;4 2.7045E-24 15148 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 216.06 216.06 5286700000 10329000 9020800 10253000 2401800 2914500 2728700 8911800 5828700 6687100 646890000 487070000 310910000 14860000 8779900 11050000 990690000 513760000 792410000 30138000 22401000 44696000 590390000 248030000 515520000 14446 458 14053 272101;272102;272103;272104;272105;272106;272107;272108;272109;272110;272111;272112;272113;272114;272115;272116;272117;272118;272119;272120;272121;272122;272123;272124;272125;272126;272127;272128;272129;272130;272131;272132;272133;272134;272135;272136;272137;272138;272139;272140;272141;272142;272143;272144;272145;272146;272147;272148;272149;272150;272151;272152;272153;272154;272155;272156;272157;272158;272159;272160;272161;272162;272163;272164;272165;272166;272167;272168;272169;272170;272171;272172;272173;272174;272175;272176;272177;272178;272179;272180;272181;272182;272183;272184;272185;272186;272187;272188;272189;272190;272191;272192;272193;272194 167102;167103;167104;167105;167106;167107;167108;167109;167110;167111;167112;167113;167114;167115;167116;167117;167118;167119;167120;167121;167122;167123;167124;167125;167126;167127;167128;167129;167130;167131;167132;167133;167134;167135;167136;167137;167138;167139;167140;167141;167142;167143;167144;167145;167146;167147;167148;167149;167150;167151;167152;167153;167154;167155;167156;167157;167158;167159;167160;167161;167162;167163;167164;167165;167166;167167;167168;167169;167170;167171;167172;167173;167174;167175;167176;167177;167178;167179;167180;167181 167152 226 78 MGHIELASPTAHIWFLK Unmodified 1950.0186 0.018573958 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 3 2 3 2 6 10 9 2 2 3 12 16 16 3 2 2 9 9 8 44.247 43.01 2;3;4 2.3572E-31 16050 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 194.49 191.89 78362000000 466250000 297080000 439640000 29363000 28306000 28112000 353800000 335310000 252720000 3729700000 3841800000 3172000000 198740000 221240000 301490000 16289000000 16583000000 17954000000 497520000 308140000 353830000 3835400000 4528600000 4316400000 14447 458 14053 272195;272196;272197;272198;272199;272200;272201;272202;272203;272204;272205;272206;272207;272208;272209;272210;272211;272212;272213;272214;272215;272216;272217;272218;272219;272220;272221;272222;272223;272224;272225;272226;272227;272228;272229;272230;272231;272232;272233;272234;272235;272236;272237;272238;272239;272240;272241;272242;272243;272244;272245;272246;272247;272248;272249;272250;272251;272252;272253;272254;272255;272256;272257;272258;272259;272260;272261;272262;272263;272264;272265;272266;272267;272268;272269;272270;272271;272272;272273;272274;272275;272276;272277;272278;272279;272280;272281;272282;272283;272284;272285;272286;272287;272288;272289;272290;272291;272292;272293;272294;272295;272296;272297;272298;272299;272300;272301;272302;272303;272304;272305;272306;272307;272308;272309;272310;272311;272312;272313;272314;272315;272316;272317;272318;272319;272320;272321;272322;272323;272324;272325 167182;167183;167184;167185;167186;167187;167188;167189;167190;167191;167192;167193;167194;167195;167196;167197;167198;167199;167200;167201;167202;167203;167204;167205;167206;167207;167208;167209;167210;167211;167212;167213;167214;167215;167216;167217;167218;167219;167220;167221;167222;167223;167224;167225;167226;167227;167228;167229;167230;167231;167232;167233;167234;167235;167236;167237;167238;167239;167240;167241;167242;167243;167244;167245;167246;167247;167248;167249;167250;167251;167252;167253;167254;167255;167256;167257;167258;167259;167260;167261;167262;167263;167264;167265;167266;167267;167268;167269;167270;167271;167272;167273;167274;167275;167276;167277;167278;167279;167280;167281;167282;167283;167284;167285;167286;167287;167288;167289;167290;167291;167292;167293;167294;167295;167296;167297;167298;167299;167300;167301;167302;167303;167304;167305;167306;167307;167308;167309;167310;167311;167312;167313;167314;167315;167316;167317;167318;167319;167320;167321;167322;167323;167324;167325;167326;167327 167285 144 MGIAALPHWVVESFER Unmodified 1840.9294 0.9294246 516 P0A9F9 metR HTH-type transcriptional regulator MetR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 51.352 50.618 3 0.076947 18625 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 32.387 28.145 30680000 3105200 3849300 0 0 0 0 0 4582200 4928600 0 0 0 0 0 0 6100400 3741400 4372900 0 0 0 0 0 0 14448 516 14054 272326;272327;272328;272329;272330;272331;272332 167328 167328 1 MGIDTNPANYEPNSINDNWPR Unmodified 2417.0706 0.070622121 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 43.799 42.223 2;3 3.8167E-28 20604 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 198.85 193.77 220000000 42288000 31003000 32803000 0 0 0 25561000 24907000 29413000 0 0 0 0 0 0 0 0 0 10377000 14496000 9156400 0 0 0 14449 1174 14055 272333;272334;272335;272336;272337;272338;272339;272340;272341;272342;272343;272344;272345;272346;272347;272348;272349;272350 167329;167330;167331;167332;167333;167334 167331 6 MGIMDEER Unmodified 979.4103 0.41030186 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.813 21.16 2 0.00069413 8326 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.12 122.76 388770000 79284000 60993000 62039000 0 0 0 23423000 21948000 22332000 0 0 0 14605000 14222000 15157000 0 0 0 24725000 26036000 24011000 0 0 0 14450 1465 14056 272351;272352;272353;272354;272355;272356;272357;272358;272359;272360;272361;272362 167335;167336;167337 167336 3 MGISTIASYR Unmodified 1097.5539 0.55392962 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.1 28.744 2 7.7291E-06 12777 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 155.07 140.91 791170000 149000000 143410000 123630000 0 0 0 53074000 54470000 49275000 0 0 0 37277000 39110000 28739000 0 0 0 37537000 37674000 37977000 0 0 0 14451 218 14057 272363;272364;272365;272366;272367;272368;272369;272370;272371;272372;272373;272374 167338;167339;167340;167341;167342;167343;167344;167345;167346;167347;167348;167349 167349 12 MGLALGR Unmodified 716.40033 0.40032952 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.543 22.767 2 0.00040886 8299 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 154.91 109.97 16369000000 1280700000 1378600000 1156100000 10569000 11243000 12210000 1233200000 1176000000 1176200000 14175000 12935000 13356000 1420000000 1124600000 1246600000 8046600 6747700 7527000 1514800000 1689900000 1844700000 12962000 8578000 8822500 14452 264 14058 272375;272376;272377;272378;272379;272380;272381;272382;272383;272384;272385;272386;272387;272388;272389;272390;272391;272392;272393;272394;272395;272396;272397;272398 167350;167351;167352;167353;167354;167355;167356;167357;167358;167359;167360;167361;167362;167363;167364;167365;167366;167367;167368;167369;167370;167371;167372;167373;167374;167375;167376;167377;167378;167379;167380;167381 167353 32 MGLALGR Oxidation (M) 732.39524 0.39524414 264 P0A6M8 fusA Elongation factor G yes yes 0 1 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 2 1 1 1 2 1 3 2 1 1 22.043 21.524 2 0.0015541 6329 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 112.27 71.058 232340000 9788300 7213800 7066500 0 0 0 19741000 21494000 12874000 30568000 0 29796000 16077000 0 0 0 0 0 13262000 15210000 0 49251000 0 0 14453 264 14058 272399;272400;272401;272402;272403;272404;272405;272406;272407;272408;272409;272410;272411;272412;272413;272414;272415;272416;272417;272418;272419 167382;167383;167384;167385;167386;167387;167388;167389;167390;167391 167386 118 9 MGLDATNKWPGETQR Unmodified 1702.8097 0.80970339 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 26.208 24.692 3 0.00022638 8868 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 67.095 66.831 37968000 0 0 0 0 0 0 0 0 0 7047700 7802000 7257300 0 0 0 0 0 0 0 0 0 4854600 5113500 5892900 14454 582 14059 272420;272421;272422;272423;272424;272425 167392;167393;167394;167395;167396 167394 3 MGLEYVDIFYSHR Unmodified 1628.7657 0.76571331 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.43 44.932 3 3.4851E-07 22003 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.99 113.69 273900000 54854000 60994000 56290000 0 0 0 21997000 20784000 22813000 0 0 0 5668000 6360600 0 0 0 0 8371400 7588300 8180700 0 0 0 14455 1958 14060 272426;272427;272428;272429;272430;272431;272432;272433;272434;272435;272436;272437 167397;167398;167399;167400;167401;167402;167403;167404;167405;167406;167407;167408 167403 12 MGLPILTEGK Unmodified 1057.5842 0.58416712 1149 P18196 minC Septum site-determining protein MinC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 39.268 37.54 2 0.00015659 18219 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.442 80.711 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14456 1149 14061 272438;272439;272440;272441 167409;167410;167411;167412 167411 4 MGLQNYLQAQIR Unmodified 1433.7449 0.74491829 650 P0ABD3 bfr Bacterioferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 1 40.5 38.826 2;3 2.2982E-23 18945 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 236.82 220.49 701490000 93939000 86331000 87597000 0 315490 0 75909000 79219000 75603000 0 0 0 30785000 32933000 27153000 0 0 0 33413000 42236000 36060000 0 0 0 14457 650 14062 272442;272443;272444;272445;272446;272447;272448;272449;272450;272451;272452;272453;272454;272455;272456;272457;272458;272459;272460;272461;272462;272463;272464;272465 167413;167414;167415;167416;167417;167418;167419;167420;167421;167422;167423;167424;167425;167426;167427 167419 15 MGLVEPLK Unmodified 885.49937 0.49937486 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.552 27.378 2 0.0035438 12599 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.55 68.69 2512300000 0 203650000 205220000 0 0 0 242050000 0 0 0 0 0 286490000 333260000 305320000 0 0 0 349060000 326560000 260660000 0 0 0 14458 86 14063 272466;272467;272468;272469;272470;272471;272472;272473;272474;272475;272476;272477 167428;167429;167430;167431;167432;167433;167434;167435;167436;167437;167438;167439 167434 12 MGLVEPLK Oxidation (M) 901.49429 0.49428948 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 1 0 By MS/MS 1 22.776 22.288 2 0.1335 9119 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 49.442 32.894 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14459 86 14063 272478 167440 167440 1 MGLVEPLKELFK Unmodified 1402.7894 0.78940887 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 2 2 2 2 2 2 2 1 47.344 45.94 2;3 2.725E-05 22438 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 125.74 100.96 988150000 81846000 73411000 57237000 0 0 0 80758000 64153000 59024000 0 0 0 82700000 90046000 109610000 0 0 0 96541000 92972000 99415000 436210 0 0 14460 86 14064 272479;272480;272481;272482;272483;272484;272485;272486;272487;272488;272489;272490;272491;272492;272493;272494;272495;272496;272497;272498;272499;272500 167441;167442;167443;167444;167445;167446;167447;167448;167449;167450;167451;167452;167453;167454;167455 167445 15 MGLVEPLKELFKDEVR Unmodified 1902.0285 0.028469942 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 46.636 45.04 3;4 1.8021E-08 20978 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 120.3 119.16 810340000 61419000 51263000 52522000 2539100 1641900 2118700 49130000 45398000 45090000 3136300 5049700 3350500 71953000 60761000 66116000 0 0 0 87983000 107040000 88916000 1867100 1450700 1600800 14461 86 14065 272501;272502;272503;272504;272505;272506;272507;272508;272509;272510;272511;272512;272513;272514;272515;272516;272517;272518;272519;272520;272521;272522;272523;272524;272525;272526;272527;272528;272529;272530;272531;272532;272533;272534;272535;272536 167456;167457;167458;167459;167460;167461;167462;167463;167464;167465;167466;167467;167468;167469;167470;167471 167469 16 MGMELNLVQLIAYTDWNETQQK Unmodified 2624.2615 0.26145936 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.663 54.18 3 4.1937E-15 25697 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 137.73 136.65 363730000 27776000 29028000 0 0 0 0 26783000 26337000 34026000 0 0 0 44349000 47616000 43253000 0 0 0 33347000 26491000 24722000 0 0 0 14462 213 14066 272537;272538;272539;272540;272541;272542;272543;272544;272545;272546;272547 167472;167473;167474;167475 167475 4 MGMNIINDDITGR Unmodified 1448.6752 0.67518375 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 2 1 1 1 1 1 1 1 1 38.961 37.184 2 2.0168E-31 18410 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 260.76 256.71 3663000000 1041400000 857650000 885980000 0 0 0 201580000 203830000 197650000 0 1196300 0 36440000 34779000 31986000 0 0 0 58066000 58737000 53672000 0 0 0 14463 1373 14067 272548;272549;272550;272551;272552;272553;272554;272555;272556;272557;272558;272559;272560;272561;272562;272563 167476;167477;167478;167479;167480;167481;167482;167483;167484;167485;167486;167487 167476 10 MGMNIINDDITGR Oxidation (M) 1464.6701 0.67009837 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 2 2 1 32.82 31.625 2 6.8305E-05 15459 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.611 81.853 46056000 22579000 17463000 6013200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14464 1373 14067 272564;272565;272566;272567;272568 167488;167489;167490 167489 537;538 2 MGNAEIEPPK Unmodified 1084.5223 0.52229515 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 17.115 17.793 2 0.0037166 6429 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 71.425 63.194 112640000 0 0 0 0 0 0 21730000 19130000 19485000 0 0 0 0 0 0 0 0 0 17206000 19699000 15390000 0 0 0 14465 1323 14068 272569;272570;272571;272572;272573;272574 167491;167492 167492 2 MGNNVVVLGTQWGDEGK Unmodified 1802.8621 0.8621329 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 39.707 38.009 2 8.7425E-40 18464 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 262 258.68 187130000 5650100 0 3849900 0 0 0 7047600 8174300 8764700 0 0 0 25246000 21789000 26863000 0 0 0 29997000 27070000 22679000 0 0 0 14466 333 14069 272575;272576;272577;272578;272579;272580;272581;272582;272583;272584;272585 167493;167494;167495;167496;167497;167498 167494 6 MGPEPIIK Unmodified 883.48372 0.48372479 452 P0A8Q0 frdC Fumarate reductase subunit C yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.391 21.976 2 0.097952 6857 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 49.65 43.195 198640000 4214200 4284900 3902400 0 0 0 24294000 25219000 18176000 10183000 9442400 8928000 20622000 20994000 18368000 2413300 1748800 1628300 0 13250000 10970000 0 0 0 14467 452 14070 272586;272587;272588;272589;272590;272591;272592;272593;272594;272595;272596;272597;272598;272599;272600;272601;272602 167499;167500 167499 2 MGPGLHYLYEAINPAELR Unmodified 2043.0248 0.024781548 1818 P76114 mcbR HTH-type transcriptional regulator McbR yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 46.716 45.477 3 1.3159E-06 22064 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 63.827 55.605 39611000 12930000 14535000 12145000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14468 1818 14071 272603;272604;272605 167501;167502 167502 2 MGPVMLDVEGYELDAEER Unmodified 2051.918 0.91799279 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.639 49.283 2 1.0905E-13 23022 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 180.28 174.44 148640000 13869000 9817900 9710100 0 0 0 11947000 10089000 12612000 0 0 0 14187000 12450000 12008000 0 0 0 15189000 12693000 14072000 0 0 0 14469 1794 14072 272606;272607;272608;272609;272610;272611;272612;272613;272614;272615;272616;272617 167503;167504 167504 2 MGPVTEDER Unmodified 1032.4546 0.45460951 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.198 14.084 2 0.080277 3225 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 45.161 43.378 136040000 19885000 20472000 16520000 4339800 0 4894300 9315500 15821000 9121000 0 0 0 4669500 5004200 0 0 0 0 4665100 21331000 0 0 0 0 14470 1528 14073 272618;272619;272620;272621;272622;272623;272624;272625;272626;272627;272628;272629 167505 167505 1 MGQQTLLLTHNIDTLGQMSCNPAIGGIGK Unmodified 3067.5253 0.52529539 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.311 45.874 3 8.9934E-23 22323 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 159.13 157.26 354770000 37595000 27642000 28144000 705200 0 0 28265000 27662000 22071000 0 1255300 0 22204000 25251000 17191000 0 0 0 40180000 41393000 35212000 0 0 0 14471 280 14074 272630;272631;272632;272633;272634;272635;272636;272637;272638;272639;272640;272641;272642;272643 167506;167507;167508;167509;167510;167511;167512;167513;167514;167515;167516 167509 11 MGRPLMFYGQR Unmodified 1354.6638 0.6638312 1738 P69739 hyaA Hydrogenase-1 small chain yes yes 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 26.74 25.1 3 0.00014795 9436 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 70.412 64.206 13083000 0 0 0 538980 466210 0 0 0 0 3586500 4225700 4265600 0 0 0 0 0 0 0 0 0 0 0 0 14472 1738 14075 272644;272645;272646;272647;272648 167517 167517 1 MGSEVFHHLAK Unmodified 1254.6179 0.61792687 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 15.172 15.781 2;3 2.6342E-10 5290 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 189.38 180.47 17721000000 413190000 383790000 1271300000 15874000 2776000 2516400 2354000000 2779200000 2941300000 2868900 1913000 3483300 633470000 625750000 546410000 3132000 1938800 7232400 1875300000 2039200000 1811100000 2230100 1461400 1295000 14473 270 14076 272649;272650;272651;272652;272653;272654;272655;272656;272657;272658;272659;272660;272661;272662;272663;272664;272665;272666;272667;272668;272669;272670;272671;272672;272673;272674;272675;272676;272677;272678;272679;272680 167518;167519;167520;167521;167522;167523;167524;167525;167526;167527;167528;167529;167530;167531;167532;167533;167534;167535;167536 167522 19 MGSEVFHHLAK Oxidation (M) 1270.6128 0.61284149 270 P0A6P9 eno Enolase yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 3 3 3 3 3 1 2 3 2 13.296 14.127 2;3 7.3852E-11 3686 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 200.07 193.41 1616900000 11200000 9502700 0 0 1180200 0 105260000 326940000 352040000 0 0 0 160250000 186040000 132740000 411550 0 0 66857000 201820000 62610000 0 0 0 14474 270 14076 272681;272682;272683;272684;272685;272686;272687;272688;272689;272690;272691;272692;272693;272694;272695;272696;272697;272698;272699;272700;272701;272702;272703;272704;272705;272706;272707;272708 167537;167538;167539;167540;167541;167542;167543;167544;167545;167546;167547;167548;167549;167550;167551;167552;167553;167554;167555;167556 167539 127 20 MGSSYGIR Unmodified 869.40654 0.40653711 379 P0A7X6 rimM Ribosome maturation factor RimM yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 14.802 15.56 2 0.060138 5141 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 62.717 61.639 65258000 13701000 0 12653000 0 0 1008400 9477700 8602300 10846000 0 0 0 3332800 0 0 0 0 0 0 0 5637800 0 0 0 14475 379 14077 272709;272710;272711;272712;272713;272714;272715;272716 167557 167557 0 MGTIDLR Unmodified 804.41637 0.41637351 796 P0ADP2 yigI Uncharacterized protein YigI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.211 21.974 2 0.006056 9175 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.068 42.542 138060000 23157000 21382000 18782000 0 0 0 8157400 2658900 0 0 0 6258500 9265100 9229600 6133000 2467400 0 2294000 0 13917000 14359000 0 0 0 14476 796 14078 272717;272718;272719;272720;272721;272722;272723;272724;272725;272726;272727;272728;272729 167558;167559;167560;167561;167562;167563;167564;167565 167561 7 MGTIEWMSTR Unmodified 1210.5475 0.54746404 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.557 33.852 2 0.00043081 11836 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 103.55 98.18 543550000 104270000 90588000 86595000 8038600 7230200 7764300 47667000 50998000 44935000 5975600 5045300 5156100 13038000 9770700 12159000 0 0 0 13844000 15079000 15402000 0 0 0 14477 147 14079 272730;272731;272732;272733;272734;272735;272736;272737;272738;272739;272740;272741;272742;272743;272744;272745;272746;272747 167566;167567;167568 167567 2 MGTLDPLGTNIK Unmodified 1258.6591 0.65912298 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.706 33.258 2 1.831E-06 16328 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 145.89 141.69 562460000 42366000 35883000 33919000 0 0 0 46218000 46240000 45642000 0 0 0 47139000 45352000 40454000 0 0 0 60390000 61347000 57508000 0 0 0 14478 1509 14080 272748;272749;272750;272751;272752;272753;272754;272755;272756;272757;272758;272759 167569;167570;167571;167572;167573 167569 5 MGTMDPTFNPVITDDSAAFSEQAVAAMEK Unmodified 3073.3719 0.37187402 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 54.439 53.047 3 6.7896E-07 26310 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.481 88.481 186520000 65462000 62116000 51860000 0 0 0 0 0 0 0 0 0 3783300 0 3302400 0 0 0 0 0 0 0 0 0 14479 1160 14081 272760;272761;272762;272763;272764 167574 167574 1 MGTPMVENDSGYK Unmodified 1427.6061 0.60610113 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 21.293 21.131 2 1.248E-05 6496 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 115.57 115.57 41088000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13881000 9225500 9556600 0 0 0 3206300 2987000 2230700 14480 80 14082 272765;272766;272767;272768;272769;272770 167575;167576;167577;167578;167579 167575 5 MGVDPWHNWEAHYEVLPGK Unmodified 2264.0473 0.047307904 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 1 2 1 40.966 39.332 3;4 6.0363E-05 19476 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 77.037 77.037 1955300000 140920000 126150000 127760000 0 0 0 163560000 143200000 147850000 5664800 9523500 8136700 156580000 171860000 150110000 17502000 10818000 8791900 178220000 172300000 188600000 4184100 13426000 10166000 14481 124 14083 272771;272772;272773;272774;272775;272776;272777;272778;272779;272780;272781;272782;272783;272784;272785;272786;272787;272788;272789;272790;272791;272792;272793;272794;272795;272796;272797;272798;272799;272800;272801;272802;272803;272804;272805;272806;272807 167580;167581;167582;167583;167584;167585;167586;167587;167588;167589;167590;167591;167592;167593;167594;167595;167596;167597 167583 18 MGVEMTLLR Unmodified 1048.5409 0.5409221 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.14 36.455 2 0.00024392 17582 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.74 112.96 89381000 11215000 11207000 9763300 656790 721480 767320 0 6741200 5505300 0 2150400 2221000 6371100 5332100 4968200 0 540110 0 0 9304100 8687400 1129900 1228100 871610 14482 127 14084 272808;272809;272810;272811;272812;272813;272814;272815;272816;272817;272818;272819;272820;272821;272822;272823;272824;272825;272826 167598;167599;167600;167601;167602;167603 167600 6 MGVITQYQSHTLVQHIQR Unmodified 2138.1055 0.10549148 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 1 2 2 24.654 23.627 3;4 6.7804E-23 10329 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 195.84 194.33 1368700000 121210000 125170000 104690000 0 884460 0 210850000 206180000 156910000 0 1626400 0 76463000 77456000 70445000 0 0 0 62172000 77022000 77620000 0 0 0 14483 283 14085 272827;272828;272829;272830;272831;272832;272833;272834;272835;272836;272837;272838;272839;272840;272841;272842;272843;272844;272845;272846;272847;272848;272849;272850;272851 167604;167605;167606;167607;167608;167609;167610;167611;167612;167613;167614;167615;167616;167617;167618;167619;167620;167621;167622;167623;167624;167625 167616 19 MGVTPSEALR Unmodified 1059.5383 0.53827956 1036 P0C079 relB Antitoxin RelB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.561 21.962 2 2.6035E-05 9529 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.81 129.42 403040000 37692000 39337000 34406000 5287000 3698300 0 35902000 31043000 34439000 1147500 0 1924200 32599000 28883000 26467000 0 0 0 13594000 39942000 32977000 0 3700600 0 14484 1036 14086 272852;272853;272854;272855;272856;272857;272858;272859;272860;272861;272862;272863;272864;272865;272866;272867;272868;272869 167626;167627;167628;167629;167630;167631;167632;167633;167634;167635;167636;167637;167638;167639 167628 14 MGWLPSAPQLGTNPLTIAGEAEK Unmodified 2380.2097 0.20968178 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.224 52.776 2 3.1315E-10 25868 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.86 181.14 460800000 13507000 9864000 8756900 0 0 0 27583000 25388000 25835000 8997000 10054000 11704000 34036000 28092000 28242000 0 0 0 43920000 44124000 43619000 0 47146000 49936000 14485 205 14087 272870;272871;272872;272873;272874;272875;272876;272877;272878;272879;272880;272881;272882;272883;272884;272885;272886 167640;167641;167642;167643;167644;167645;167646;167647;167648;167649 167645 10 MGWVPPMGSHSDALTHVANGQIVICAR Unmodified 2903.3993 0.39930702 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 40.943 39.673 4 0.013395 14582 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 42.106 39.427 77394000 13837000 0 0 0 0 0 0 0 0 0 0 2083300 0 18923000 0 8083700 6907200 0 19398000 0 0 0 8162800 0 14486 1445 14088 272887;272888;272889;272890;272891;272892;272893 167650;167651;167652 167650 3 MGYMQAFVK Unmodified 1073.5038 0.50380831 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.972 31.607 2 0.0033817 15063 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.784 75.145 227340000 13228000 13180000 13272000 0 0 0 25821000 23120000 21428000 2338200 1726400 2275500 20215000 0 14240000 2454500 1742700 1908000 28839000 22909000 18645000 0 0 0 14487 583 14089 272894;272895;272896;272897;272898;272899;272900;272901;272902;272903;272904;272905;272906;272907;272908;272909;272910;272911 167653;167654;167655;167656;167657;167658;167659;167660;167661 167653 9 MHAEGRPVDILAVTGNMDEEHR Unmodified 2476.1587 0.15872562 1287 P26649 glgS Glycogen synthesis protein GlgS yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 2 2 2 2 2 2 1 2 2 28.163 26.939 4;5 4.2101E-07 12601 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 106.73 103.64 386450000 0 8978100 10743000 0 0 0 66568000 83734000 66880000 0 0 0 34648000 34726000 34054000 0 0 0 11758000 16654000 17707000 0 0 0 14488 1287 14090 272912;272913;272914;272915;272916;272917;272918;272919;272920;272921;272922;272923;272924;272925;272926;272927;272928;272929;272930;272931 167662;167663;167664;167665;167666;167667;167668;167669;167670 167666 9 MHCPFCFAVDTK Unmodified 1511.636 0.63596147 419 P0A8D0 nrdR Transcriptional repressor NrdR yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 30.972 29.7 2 9.3304E-05 13764 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.143 93.14 68175000 8185200 10835000 7590100 0 0 0 5527300 0 0 0 0 0 5026300 4685600 4720900 0 0 0 7931000 6900800 6772600 0 0 0 14489 419 14091 272932;272933;272934;272935;272936;272937;272938;272939;272940;272941 167671;167672;167673;167674;167675 167674 4 MHDANIR Unmodified 855.40212 0.40212043 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By MS/MS 1 10.353 11.268 2 0.0022251 2407 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 105.22 83.289 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14490 85 14092 272942 167676 167676 1 MHEHATK Unmodified 852.39122 0.39122139 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 4.0991 4.9981 2 0.0021628 715 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.16 112.76 106320000 13950000 14495000 9859600 50717 44633 48603 0 0 0 0 0 0 6778000 6057600 5260100 0 0 0 19339000 15128000 15313000 0 0 0 14491 543 14093 272943;272944;272945;272946;272947;272948;272949;272950;272951;272952;272953;272954 167677;167678;167679;167680;167681;167682;167683;167684;167685 167677 9 MHELAEK Unmodified 856.41129 0.41128813 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.468 11.284 2 0.0079027 2681 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.369 63.26 1198300000 122280000 121650000 98590000 0 0 0 107420000 94879000 110160000 0 0 0 89864000 79890000 83516000 0 0 0 97661000 102400000 89937000 0 0 0 14492 445 14094 272955;272956;272957;272958;272959;272960;272961;272962;272963;272964;272965;272966 167686;167687;167688;167689;167690 167686 5 MHENAAWLDGQR Unmodified 1426.6412 0.6411815 175 P08179 purN Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 19.031 19.557 3 0.089826 7371 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 32.068 30.593 128650000 17398000 17761000 16843000 0 0 0 11145000 11155000 8986800 0 0 0 9276500 11491000 0 0 0 0 11665000 0 12927000 0 0 0 14493 175 14095 272967;272968;272969;272970;272971;272972;272973;272974;272975;272976 167691;167692;167693;167694 167693 4 MHENQQPQTEAFELSAAER Unmodified 2214.9964 0.99639455 928 P0AFD1 nuoE NADH-quinone oxidoreductase subunit E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 2 2 2 2 1 1 1 2 2 2 1 1 1 25.772 24.645 2;3 1.3543E-36 11021 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 271.2 266.31 1282000000 0 0 0 13049000 12871000 11865000 82534000 89779000 93632000 15746000 23397000 0 128450000 125040000 117100000 7920500 6788600 7005400 171280000 174170000 157810000 14942000 12792000 15862000 14494 928 14096 272977;272978;272979;272980;272981;272982;272983;272984;272985;272986;272987;272988;272989;272990;272991;272992;272993;272994;272995;272996;272997;272998;272999;273000;273001;273002;273003;273004;273005;273006;273007 167695;167696;167697;167698;167699;167700;167701;167702;167703;167704;167705;167706;167707;167708;167709;167710;167711;167712;167713;167714;167715;167716;167717;167718;167719 167708 25 MHENQQPQTEAFELSAAER Oxidation (M) 2230.9913 0.99130917 928 P0AFD1 nuoE NADH-quinone oxidoreductase subunit E yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.966 23.762 3 0.0013233 10567 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 64.203 64.199 109280000 0 0 0 0 0 0 9503100 10566000 10719000 3104200 2828500 1938500 8814100 6372900 5346000 0 0 0 17390000 16466000 12870000 1842800 0 1518500 14495 928 14096 273008;273009;273010;273011;273012;273013;273014;273015;273016;273017;273018;273019;273020;273021 167720;167721 167721 413 1 MHFFGDSEGR Unmodified 1181.4924 0.492392 1014 P0AGF2 csdE Sulfur acceptor protein CsdE yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 1 2 2 2 2 2 2 20.963 21.307 2;3 0.0026983 8529 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 88.948 82.778 149260000 16335000 16108000 16036000 0 0 0 10526000 11574000 6283100 0 0 0 10066000 7678600 9170700 0 0 0 14135000 17115000 14229000 0 0 0 14496 1014 14097 273022;273023;273024;273025;273026;273027;273028;273029;273030;273031;273032;273033;273034;273035;273036;273037;273038;273039;273040;273041;273042;273043;273044 167722;167723;167724;167725;167726;167727 167724 4 MHGPQEVAFANK Unmodified 1327.6343 0.63430521 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.39 17.176 2;3 3.0012E-06 6007 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.22 131.55 734630000 152350000 147970000 136130000 0 0 0 37843000 35848000 38140000 0 0 0 25947000 17199000 20663000 0 0 0 34423000 47392000 40725000 0 0 0 14497 1465 14098 273045;273046;273047;273048;273049;273050;273051;273052;273053;273054;273055;273056;273057;273058;273059;273060;273061;273062;273063;273064;273065;273066;273067;273068 167728;167729;167730;167731;167732;167733;167734;167735;167736;167737;167738;167739;167740;167741;167742;167743 167734 16 MHIDEFQELGFSVAWR Unmodified 1963.9251 0.9250675 1506 P38521 yggL Uncharacterized protein YggL yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.836 39.171 3 0.11745 19170 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 23.481 21.338 622000000 196570000 189750000 174020000 0 0 0 5542900 4967700 4183200 0 0 0 3668600 4094000 2851200 0 0 0 11291000 12995000 12070000 0 0 0 14498 1506 14099 273069;273070;273071;273072;273073;273074;273075;273076;273077;273078;273079;273080 167744;167745 167744 0 MHNQAPIQR Unmodified 1093.5451 0.54509627 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 1 2 1 2 2 2 2 10.656 11.516 2;3 4.2185E-05 2627 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 133.81 119.14 933720000 120080000 105680000 108360000 2429400 2803700 4267400 52511000 98055000 54472000 0 0 0 42359000 41796000 83961000 0 0 0 60480000 51603000 104870000 0 0 0 14499 1649 14100 273081;273082;273083;273084;273085;273086;273087;273088;273089;273090;273091;273092;273093;273094;273095;273096;273097;273098;273099;273100;273101;273102;273103;273104;273105;273106;273107 167746;167747;167748;167749;167750;167751;167752;167753;167754;167755;167756;167757;167758;167759 167757 14 MHNQAPIQR Oxidation (M) 1109.54 0.5400109 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 10.316 11.172 2 0.10534 2590 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 44.447 35.534 22996000 0 0 0 0 0 0 0 5466000 4820900 0 0 0 2712100 0 2809800 0 0 0 7186800 0 0 0 0 0 14500 1649 14100 273108;273109;273110;273111;273112 167760 167760 1 MHPAWFR Unmodified 943.44868 0.44867669 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.091 20.575 2 0.0012713 8218 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 114.67 93.513 162390000 15471000 14217000 16214000 1791300 1700600 2116200 0 0 0 0 0 0 18916000 18348000 22603000 0 0 0 0 23844000 27173000 0 0 0 14501 1426 14101 273113;273114;273115;273116;273117;273118;273119;273120;273121;273122;273123;273124 167761;167762 167761 2 MHPDQDTLK Unmodified 1083.5019 0.50189405 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 11.502 12.207 2;3 0.00091474 3073 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.72 96.987 755240000 38052000 42826000 42716000 14397000 15402000 13582000 68606000 51887000 67098000 20392000 14697000 22240000 47297000 43127000 51708000 0 0 0 55011000 60304000 62543000 3793400 11365000 8199000 14502 408 14102 273125;273126;273127;273128;273129;273130;273131;273132;273133;273134;273135;273136;273137;273138;273139;273140;273141;273142;273143;273144;273145;273146;273147;273148;273149;273150;273151;273152;273153;273154;273155;273156;273157;273158;273159;273160;273161;273162;273163;273164;273165 167763;167764;167765;167766;167767;167768;167769;167770;167771;167772;167773;167774;167775;167776;167777;167778;167779;167780;167781;167782;167783;167784;167785;167786;167787;167788;167789;167790;167791 167787 29 MHPMLNIAVR Unmodified 1180.6209 0.62090375 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 2 2 2 1 1 1 1 1 1 26.098 25.099 2;3 0.00020907 10710 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 80.219 69.411 210590000 31697000 23866000 28775000 681240 510850 0 6940900 9775300 6286400 0 0 0 18207000 27636000 19991000 0 2341100 1893500 10925000 11289000 9481400 0 0 289780 14503 787 14103 273166;273167;273168;273169;273170;273171;273172;273173;273174;273175;273176;273177;273178;273179;273180;273181;273182;273183;273184;273185;273186;273187;273188 167792;167793;167794;167795;167796;167797;167798;167799;167800;167801;167802;167803;167804;167805;167806;167807 167806 14 MHQFDKVEMVQIVRPEDSMAALEEMTGHAEK Unmodified 3585.6724 0.67242992 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.78 42.25 5 1.3451E-12 19726 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 117.22 115.49 433760000 0 25843000 23893000 0 0 0 48685000 49368000 41068000 0 0 0 39316000 32621000 34922000 0 0 0 41300000 43803000 52944000 0 0 0 14504 441 14104 273189;273190;273191;273192;273193;273194;273195;273196;273197;273198;273199 167808;167809;167810;167811;167812 167811 5 MHQIALHGYFK Unmodified 1343.6809 0.68086147 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 20.151 20.302 3 0.10355 6766 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 30.392 26.048 62648000 0 0 0 670520 0 0 12749000 0 12146000 2375900 3085500 3072500 4948200 0 7670900 0 0 0 7574200 0 7063100 0 0 1291500 14505 27 14105 273200;273201;273202;273203;273204;273205;273206;273207;273208;273209;273210 167813;167814 167813 2 MIAALQR Unmodified 801.45309 0.45309337 1228 P23894 htpX Protease HtpX yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.987 19.366 2 0.025731 6890 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 71.359 55.92 179180000 4714500 5908200 4895200 3304600 3156400 2425500 19218000 18704000 18296000 5686900 5318200 5149200 10709000 9058500 8023000 0 0 0 17675000 13527000 14113000 3377900 2838800 3082500 14506 1228 14106 273211;273212;273213;273214;273215;273216;273217;273218;273219;273220;273221;273222;273223;273224;273225;273226;273227;273228;273229;273230;273231 167815;167816 167816 2 MIAEFESR Unmodified 981.45897 0.45896661 1684 P64540 yfcL Uncharacterized protein YfcL yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.817 22.288 2 0.00077509 9065 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 123.69 94.314 622810000 44866000 44105000 40431000 0 0 0 30288000 35946000 39769000 0 0 0 56168000 46048000 49039000 0 0 0 84101000 74846000 77205000 0 0 0 14507 1684 14107 273232;273233;273234;273235;273236;273237;273238;273239;273240;273241;273242;273243 167817;167818;167819;167820;167821 167820 5 MIAGELYR Unmodified 951.48479 0.48478743 1943 P77791 maa Maltose O-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.539 23.524 2 0.060138 10205 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 62.717 48.304 247400000 12413000 14036000 12938000 0 0 0 27671000 25295000 25078000 1068100 1167000 0 14530000 11918000 14556000 0 0 0 30280000 28846000 27605000 0 0 0 14508 1943 14108 273244;273245;273246;273247;273248;273249;273250;273251;273252;273253;273254;273255;273256;273257 167822;167823 167823 0 MIAGLETITSGDLFIGEK Unmodified 1893.9758 0.97576567 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.951 52.648 2 4.9167E-18 21395 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 178.58 169.29 94259000 0 0 0 0 0 0 0 0 3849100 23831000 8590300 13890000 4053300 5219600 4465800 0 0 1468100 7918900 6057800 7147800 0 0 7766300 14509 1718 14109 273258;273259;273260;273261;273262;273263;273264;273265;273266;273267;273268;273269 167824;167825;167826;167827;167828;167829;167830 167824 1 MIAGLETITSGDLFIGEKR Unmodified 2050.0769 0.076876698 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.596 47.482 3 8.4453E-10 18969 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 113.88 111.45 129130000 0 0 0 1812000 1544200 2219600 0 0 0 21802000 23690000 26620000 0 0 0 5161100 3211000 5775500 0 0 0 13312000 11748000 12240000 14510 1718 14110 273270;273271;273272;273273;273274;273275;273276;273277;273278;273279;273280;273281 167831;167832;167833;167834 167834 4 MIAITGATGQLGHYVIESLMK Unmodified 2232.1646 0.16464585 1523 P39315 qorB Quinone oxidoreductase 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.344 51.904 3 2.9845E-07 25453 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 106.03 97.316 360980000 50132000 40874000 44620000 0 0 0 38645000 30346000 29045000 0 0 0 18762000 21978000 18627000 0 0 0 19396000 24543000 24010000 0 0 0 14511 1523 14111 273282;273283;273284;273285;273286;273287;273288;273289;273290;273291;273292;273293 167835;167836;167837 167835 3 MIALGADTVLLGR Unmodified 1328.7486 0.74860669 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.293 45.758 2 5.5574E-07 22146 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.25 129.99 184630000 9805800 6837700 9095600 5197200 4196100 3772600 8364400 11084000 11473000 7929700 8326200 8987100 5590600 9105800 8715700 0 0 0 17080000 14058000 11936000 7930200 7450200 7690600 14512 1417 14112 273294;273295;273296;273297;273298;273299;273300;273301;273302;273303;273304;273305;273306;273307;273308;273309;273310;273311;273312;273313;273314 167838;167839;167840;167841;167842;167843;167844 167844 7 MIALIQR Unmodified 843.50004 0.50004356 263 P0A6M4 dtd D-aminoacyl-tRNA deacylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.995 26.847 2 0.0016613 12323 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.05 126.05 268080000 50229000 46836000 44090000 0 0 0 11320000 14693000 11480000 0 0 0 12071000 13660000 13281000 0 0 0 20143000 16246000 14032000 0 0 0 14513 263 14113 273315;273316;273317;273318;273319;273320;273321;273322;273323;273324;273325;273326 167845;167846;167847;167848;167849;167850;167851 167847 7 MIAPILDEIADEYQGK Unmodified 1804.8917 0.89170169 571 P0AA25 trxA Thioredoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 2 2 2 2 3 2 1 2 2 3 2 2 1 1 1 2 2 2 1 2 1 54.39 53.054 2;3 1.024E-18 24906 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 247.79 244.75 11154000000 1538600000 1488800000 1317700000 14721000 13707000 15846000 719230000 624560000 555090000 8216800 18872000 19149000 750210000 770930000 769960000 7076100 5720900 8479100 895380000 785210000 786070000 14406000 14439000 11217000 14514 571 14114 273327;273328;273329;273330;273331;273332;273333;273334;273335;273336;273337;273338;273339;273340;273341;273342;273343;273344;273345;273346;273347;273348;273349;273350;273351;273352;273353;273354;273355;273356;273357;273358;273359;273360;273361;273362;273363;273364;273365;273366;273367;273368;273369;273370;273371 167852;167853;167854;167855;167856;167857;167858;167859;167860;167861;167862;167863;167864;167865;167866;167867;167868;167869;167870;167871;167872;167873;167874;167875;167876;167877;167878;167879;167880;167881;167882;167883 167882 32 MIAPILDEIADEYQGK Oxidation (M) 1820.8866 0.88661631 571 P0AA25 trxA Thioredoxin-1 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 2 2 2 2 1 2 52.352 51.11 2 7.3093E-10 25462 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.24 134.64 312640000 28135000 40745000 22569000 0 0 0 17724000 29351000 25237000 0 0 0 23468000 21897000 25895000 0 0 0 30134000 16587000 30903000 0 0 0 14515 571 14114 273372;273373;273374;273375;273376;273377;273378;273379;273380;273381;273382;273383;273384;273385;273386;273387;273388;273389;273390;273391 167884;167885;167886;167887;167888;167889;167890;167891;167892;167893;167894;167895;167896;167897;167898 167884 341 11 MIAVTTTSGTGSEVTPFAVVTDDATGQK Unmodified 2783.3535 0.35350507 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 1 2 2 2 2 2 2 2 1 1 1 48.651 47.306 2;3 7.6826E-41 23339 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 299.38 292.24 1211200000 127510000 35800000 33485000 2397800 10165000 12091000 206040000 45916000 193400000 0 0 0 95053000 84110000 84090000 0 0 0 86561000 85653000 80658000 10203000 7994700 10030000 14516 548 14115 273392;273393;273394;273395;273396;273397;273398;273399;273400;273401;273402;273403;273404;273405;273406;273407;273408;273409;273410;273411;273412;273413;273414;273415;273416;273417;273418 167899;167900;167901;167902;167903;167904;167905;167906;167907;167908;167909;167910;167911;167912;167913;167914;167915;167916;167917;167918;167919;167920;167921;167922;167923 167901 25 MIDTTLPLTDIHR Unmodified 1524.797 0.79701344 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 2 35.801 34.2 2;3 2.867E-06 13338 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 100.38 97.742 2559500000 137990000 126700000 151990000 7812400 6976600 7846500 220260000 230300000 229290000 47536000 52279000 41027000 214010000 209560000 234740000 25970000 18340000 16203000 164590000 202940000 190320000 7641400 7577400 7639700 14517 1196 14116 273419;273420;273421;273422;273423;273424;273425;273426;273427;273428;273429;273430;273431;273432;273433;273434;273435;273436;273437;273438;273439;273440;273441;273442;273443;273444;273445;273446;273447;273448;273449;273450;273451;273452;273453;273454;273455;273456;273457;273458;273459;273460;273461;273462 167924;167925;167926;167927;167928;167929;167930;167931;167932;167933;167934;167935;167936;167937;167938;167939;167940;167941;167942;167943;167944;167945;167946;167947;167948;167949;167950;167951;167952;167953;167954;167955;167956;167957;167958;167959 167933 26 MIDTTLPLTDIHR Oxidation (M) 1540.7919 0.79192806 1196 P22333 add Adenosine deaminase yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 32.724 31.473 3 0.0019883 15182 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.441 53.229 76542000 8101200 7239800 5583500 0 734980 477630 17822000 15771000 14559000 0 0 0 0 5091900 0 630140 0 530800 0 0 0 0 0 0 14518 1196 14116 273463;273464;273465;273466;273467;273468;273469;273470;273471;273472;273473 167960;167961;167962 167962 504 3 MIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK Unmodified 4040.8812 0.88121994 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 1 54.147 52.703 3;4 2.6196E-37 25958 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.33 187.01 5984300000 744890000 748020000 687950000 0 0 0 1153100000 1128200000 1181600000 0 0 0 60689000 56529000 48801000 0 0 0 67628000 63346000 43501000 0 0 0 14519 1755;1756 14117 273474;273475;273476;273477;273478;273479;273480;273481;273482;273483;273484;273485;273486;273487;273488;273489;273490;273491;273492;273493;273494;273495;273496 167963;167964;167965;167966;167967;167968;167969;167970;167971;167972;167973;167974;167975;167976 167971 13 MIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK Oxidation (M) 4056.8761 0.87613456 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 1 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 53.97 52.446 3 1.9506E-12 25929 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 100.64 99.373 138630000 0 12160000 13742000 0 0 0 41692000 34474000 36558000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14520 1755;1756 14117 273497;273498;273499;273500;273501 167977 167977 611 1 MIEDGELDKR Unmodified 1204.5758 0.57578728 55 P00944 xylA Xylose isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 14.307 15.103 2 6.4896E-05 5030 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.07 87.233 20470000 0 5701300 7107300 0 0 0 0 2957600 0 0 0 0 0 1143600 1281500 0 0 0 0 2278800 0 0 0 0 14521 55 14118 273502;273503;273504;273505;273506;273507;273508 167978;167979;167980 167978 3 MIEFDAK Unmodified 852.40514 0.40514012 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.814 22.956 2 0.0089075 9624 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 88.35 73.33 1441300000 27535000 25823000 25721000 632850 495580 0 94891000 88426000 95508000 0 0 0 151190000 109730000 129850000 0 0 0 220210000 232660000 237470000 0 0 1118900 14522 1065 14119 273509;273510;273511;273512;273513;273514;273515;273516;273517;273518;273519;273520;273521;273522;273523 167981;167982;167983;167984;167985;167986;167987;167988;167989 167987 9 MIEFVYPHTQLVAGVDEVGR Unmodified 2259.1358 0.13578856 1059 P10442 rnhB Ribonuclease HII yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 44.864 43.533 3 2.764E-10 21260 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 120.4 106.97 63915000 3781800 6062100 0 0 0 0 0 0 0 0 0 0 9109900 0 9962600 0 0 0 10675000 11493000 12830000 0 0 0 14523 1059 14120 273524;273525;273526;273527;273528;273529;273530 167990;167991;167992 167990 3 MIEGSCK Unmodified 823.35681 0.35680972 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.802 11.392 2 0.0021148 2746 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 118.01 108.24 11341000000 378930000 391320000 329360000 7525800 8581300 9471700 1508400000 1373700000 1550000000 18112000 12556000 14980000 1161800000 1238700000 1094800000 5872600 5976600 7873700 787190000 701670000 713090000 9690200 6380900 5414500 14524 212 14121 273531;273532;273533;273534;273535;273536;273537;273538;273539;273540;273541;273542;273543;273544;273545;273546;273547;273548;273549;273550;273551;273552;273553;273554 167993;167994;167995;167996;167997;167998;167999;168000;168001;168002;168003;168004;168005 167997 13 MIEGSCK Oxidation (M) 839.35172 0.35172434 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 7.136 8.0378 2 0.013219 1294 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.866 78.713 450460000 0 0 0 0 0 0 105320000 95634000 83003000 0 0 0 40579000 35241000 25337000 0 0 0 26782000 23272000 15290000 0 0 0 14525 212 14121 273555;273556;273557;273558;273559;273560;273561;273562;273563;273564;273565;273566;273567;273568;273569;273570 168006;168007;168008;168009;168010;168011;168012;168013;168014;168015;168016;168017 168010 76 12 MIELVIVSR Unmodified 1058.6158 0.6158016 907 P0AF26 narJ Nitrate reductase molybdenum cofactor assembly chaperone NarJ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.597 39.77 2 0.00084346 15607 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 99.802 74.065 85488000 0 0 0 1502500 1323500 1091300 6149200 7040100 7266900 2527200 2392600 2354000 5129800 4251000 3660400 550550 0 0 9366200 11057000 10486000 2974100 3222800 3143600 14526 907 14122 273571;273572;273573;273574;273575;273576;273577;273578;273579;273580;273581;273582;273583;273584;273585;273586;273587;273588;273589 168018;168019;168020;168021;168022;168023;168024;168025 168022 3 MIESNLR Oxidation (M) 877.43275 0.43275186 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 3 14.46 14.823 2 0.0023369 3199 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 122.98 88.155 102590000 0 0 0 0 0 0 8815600 7992000 7154600 0 0 0 2077700 1545300 2133600 25244000 22670000 24957000 0 0 0 0 0 0 14527 1089 14123 273590;273591;273592;273593;273594;273595;273596;273597;273598;273599;273600;273601;273602 168026;168027;168028;168029;168030;168031 168026 491 6 MIESNLR Unmodified 861.43784 0.43783723 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.186 15.572 2 0.00080871 4186 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 144.29 96.121 2955700000 11925000 13194000 13834000 496900 0 0 89720000 95544000 0 25494000 24205000 23666000 0 0 0 980760000 796800000 827140000 23381000 0 21441000 2574700 3121200 2421900 14528 1089 14123 273603;273604;273605;273606;273607;273608;273609;273610;273611;273612;273613;273614;273615;273616;273617;273618;273619;273620;273621;273622;273623 168032;168033;168034;168035;168036;168037;168038;168039;168040 168032 9 MIEVTGVTLK Unmodified 1089.6104 0.61038187 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 33.509 32.142 2 0.0015294 15317 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.213 80.278 81555000 27971000 25405000 20745000 0 0 0 2092300 0 0 0 0 0 0 1817200 1201100 0 0 0 0 2323800 0 0 0 0 14529 1554 14124 273624;273625;273626;273627;273628;273629;273630 168041;168042;168043 168041 3 MIFLMTK Unmodified 882.47072 0.47071727 1657 P63204 gadE Transcriptional regulator GadE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 37.313 35.908 2 0.0041051 14666 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 105.2 98.814 33222000 0 0 0 500460 659060 431210 0 0 0 6274500 3988600 5335100 0 0 0 7376300 4442900 4213700 0 0 0 0 0 0 14530 1657 14125 273631;273632;273633;273634;273635;273636;273637;273638;273639 168044;168045;168046;168047;168048 168047 5 MIGDGVAFAVR Unmodified 1134.5856 0.5855641 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.852 35.329 2 1.6168E-05 16403 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 140.5 130.91 921780000 0 0 0 0 0 0 0 0 0 40963000 44225000 44378000 86036000 79409000 95526000 12468000 6669900 6492900 139860000 140170000 131290000 30186000 32377000 31718000 14531 1442 14126 273640;273641;273642;273643;273644;273645;273646;273647;273648;273649;273650;273651;273652;273653;273654 168049;168050;168051;168052;168053;168054;168055;168056;168057;168058;168059;168060 168058 11 MIGDGVAFAVR Oxidation (M) 1150.5805 0.58047873 1442 P36672 treB PTS system trehalose-specific EIIBC component;Trehalose-specific phosphotransferase enzyme IIB component;Trehalose permease IIC component yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 33.439 31.491 2 0.024499 11987 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 59.245 50.382 66734000 0 0 0 10872000 10553000 10742000 0 0 0 3255100 3118800 1604900 0 0 0 0 0 0 0 0 0 8591700 9795800 8199900 14532 1442 14126 273655;273656;273657;273658;273659;273660;273661;273662;273663;273664;273665;273666;273667;273668;273669;273670;273671 168061;168062 168061 548 2 MIGLVGK Unmodified 716.42548 0.42548163 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 2 3 3 3 3 3 2 2 2 3 3 3 2 1 1 4 3 4 3 2 3 22.424 21.988 1;2 0.030054 9570 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 66.994 62.776 5757400000 666390000 626740000 640440000 13726000 16276000 18151000 262440000 268380000 236400000 38853000 39107000 31576000 376750000 318940000 305600000 29388000 17745000 18647000 546160000 612850000 556080000 44716000 36165000 35874000 14533 1621 14127 273672;273673;273674;273675;273676;273677;273678;273679;273680;273681;273682;273683;273684;273685;273686;273687;273688;273689;273690;273691;273692;273693;273694;273695;273696;273697;273698;273699;273700;273701;273702;273703;273704;273705;273706;273707;273708;273709;273710;273711;273712;273713;273714;273715;273716;273717;273718;273719;273720;273721;273722;273723;273724;273725;273726;273727;273728;273729;273730;273731;273732;273733;273734;273735;273736;273737;273738 168063;168064;168065;168066;168067;168068;168069;168070;168071;168072;168073;168074;168075;168076;168077;168078;168079;168080;168081;168082;168083;168084;168085;168086;168087;168088;168089;168090;168091;168092 168083 27 MIGLVGK Oxidation (M) 732.4204 0.42039626 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 1 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 23.033 22.423 2 0.1273 9804 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 46.766 31.13 12205000 0 0 0 0 0 0 0 0 0 0 0 0 2708600 3104800 2695500 0 0 0 3696200 0 0 0 0 0 14534 1621 14127 273739;273740;273741;273742 168093;168094 168093 0 MIGLVGKK Unmodified 844.52044 0.52044465 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 13.766 14.853 2 0.016295 3498 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 74.191 71.286 20360000 0 0 0 5496000 7138500 7725000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14535 1621 14128 273743;273744;273745 168095;168096;168097 168097 3 MIGNLVMEQLK Unmodified 1274.6727 0.67266455 419 P0A8D0 nrdR Transcriptional repressor NrdR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 41.263 39.549 2 2.7515E-07 19321 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.59 152.66 420820000 44733000 53608000 44954000 0 0 0 27352000 28860000 28520000 0 0 571980 32870000 28913000 32483000 0 0 0 29685000 35943000 32331000 0 0 0 14536 419 14129 273746;273747;273748;273749;273750;273751;273752;273753;273754;273755;273756;273757;273758 168098;168099;168100;168101;168102;168103;168104;168105;168106 168101 9 MIGPNCPGVITPGECK Oxidation (M) 1744.7946 0.79464696 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.837 25.69 2 3.8711E-11 11189 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 156.69 156.69 192980000 29131000 21531000 22580000 0 0 0 11222000 9935900 9901900 0 0 0 7678400 7823500 7102800 0 0 0 22593000 20525000 22953000 0 0 0 14537 1013 14130 273759;273760;273761;273762;273763;273764;273765;273766;273767;273768;273769;273770 168107;168108;168109;168110;168111;168112;168113;168114;168115;168116;168117 168116 463 11 MIGPNCPGVITPGECK Unmodified 1728.7997 0.79973233 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 2 2 2 1 1 29.982 28.523 2;3 1.2357E-13 13270 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.98 167.56 6278300000 770230000 834240000 732990000 1802300 2071300 2034700 226770000 214440000 271240000 2333600 1428300 1565800 324740000 319440000 319270000 0 0 0 744750000 749120000 757290000 1412500 0 1124100 14538 1013 14130 273771;273772;273773;273774;273775;273776;273777;273778;273779;273780;273781;273782;273783;273784;273785;273786;273787;273788;273789;273790;273791;273792;273793;273794;273795;273796;273797;273798;273799;273800 168118;168119;168120;168121;168122;168123;168124;168125;168126;168127;168128;168129;168130;168131;168132;168133;168134;168135;168136;168137 168127 20 MIHTLLGEENFQK Unmodified 1558.7814 0.78136338 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 1 1 2 2 2 1 1 2 1 28.729 27.479 2;3 7.8558E-62 12650 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 329.49 325.15 3521900000 495450000 421230000 390270000 1952000 1332400 2197000 297050000 271790000 263830000 0 0 0 207390000 217120000 220180000 0 0 0 242470000 239770000 248230000 0 0 1644100 14539 94 14131 273801;273802;273803;273804;273805;273806;273807;273808;273809;273810;273811;273812;273813;273814;273815;273816;273817;273818;273819;273820;273821;273822;273823;273824 168138;168139;168140;168141;168142;168143;168144;168145;168146;168147;168148;168149;168150;168151;168152;168153;168154;168155;168156;168157 168146 20 MIIGGFSAYSGVVDWAK Unmodified 1799.8916 0.89164211 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 1 4 2 3 3 2 3 3 4 3 53.638 52.198 2;3 7.798E-14 24535 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 164.11 164.11 943630000 148530000 123920000 123970000 2379400 0 0 63119000 46295000 61731000 0 0 0 58132000 52577000 56986000 0 0 0 66269000 70913000 68800000 0 0 0 14540 391 14132 273825;273826;273827;273828;273829;273830;273831;273832;273833;273834;273835;273836;273837;273838;273839;273840;273841;273842;273843;273844;273845;273846;273847;273848;273849;273850;273851;273852;273853;273854;273855;273856;273857;273858;273859;273860;273861;273862;273863 168158;168159;168160;168161;168162;168163;168164;168165;168166;168167;168168;168169;168170;168171;168172;168173;168174;168175;168176;168177;168178;168179;168180;168181;168182;168183;168184;168185;168186 168182 25 MIIGNIHNLQPWLPQELR Unmodified 2171.1674 0.16736346 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 49.87 48.479 2;3;4 2.4556E-45 23784 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 264.55 243.32 8390300000 2796800000 2446800000 2270700000 69123000 68355000 64544000 109150000 104640000 106260000 0 0 0 54609000 63641000 54885000 0 0 0 56611000 62560000 61595000 0 0 0 14541 921 14133 273864;273865;273866;273867;273868;273869;273870;273871;273872;273873;273874;273875;273876;273877;273878;273879;273880;273881;273882;273883;273884;273885;273886;273887;273888;273889;273890;273891;273892;273893;273894;273895;273896;273897 168187;168188;168189;168190;168191;168192;168193;168194;168195;168196;168197;168198;168199;168200;168201;168202;168203;168204;168205;168206;168207;168208;168209 168199 23 MIIGNIHNLQPWLPQELR Oxidation (M) 2187.1623 0.16227808 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 1 0 By MS/MS 1 46.977 45.724 3 0.0015891 22435 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.82 60.506 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14542 921 14133 273898 168210 168210 412 1 MIIPALDLIDGTVVR Unmodified 1624.9222 0.92221396 1054 P10371 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.239 53.744 2 0.00036319 26674 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 77.64 53.79 72134000 0 0 0 0 0 0 8105700 8000300 7044700 0 0 0 8924400 8528400 6838000 0 0 0 8395700 7744000 8553000 0 0 0 14543 1054 14134 273899;273900;273901;273902;273903;273904;273905;273906;273907 168211 168211 0 MIIRDENYFTDKYELTR Unmodified 2206.0729 0.072853952 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 32.885 31.445 3;4 7.7956E-05 14311 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 79.311 76.12 303450000 40599000 31784000 24525000 0 0 0 28219000 23125000 28398000 0 0 0 22819000 21138000 18005000 0 0 0 19510000 20934000 24391000 0 0 0 14544 1252 14135 273908;273909;273910;273911;273912;273913;273914;273915;273916;273917;273918;273919;273920;273921;273922;273923;273924;273925;273926;273927;273928;273929;273930;273931 168212;168213 168213 2 MIISAASDYR Unmodified 1125.5488 0.54884425 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.63 24.416 2 9.1959E-05 10863 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 131.22 126.81 255800000 13951000 12369000 11523000 4097300 5310000 5107500 17055000 16832000 14885000 8448000 7615200 7810500 13272000 11764000 11669000 0 0 0 23998000 24949000 24656000 7814100 6233700 6439500 14545 1417 14136 273932;273933;273934;273935;273936;273937;273938;273939;273940;273941;273942;273943;273944;273945;273946;273947;273948;273949;273950;273951;273952 168214;168215;168216;168217;168218;168219;168220;168221;168222;168223;168224;168225;168226;168227 168221 12 MIIVTGGAGFIGSNIVK Unmodified 1675.9331 0.93311299 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 48.044 46.513 2;3 2.0141E-07 18618 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 133.71 113.68 608420000 4236600 4959600 7002000 1691600 1574700 0 44855000 48968000 49340000 20775000 20896000 22996000 72782000 66796000 54539000 0 0 0 69155000 64590000 53264000 0 0 0 14546 1716 14137 273953;273954;273955;273956;273957;273958;273959;273960;273961;273962;273963;273964;273965;273966;273967;273968;273969;273970;273971;273972;273973;273974;273975;273976;273977;273978;273979;273980;273981 168228;168229;168230;168231;168232;168233;168234;168235;168236;168237;168238 168232 11 MIIYLHGFDSNSPGNHEK Unmodified 2057.9629 0.96290957 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.184 26.981 3 2.1362E-14 11814 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 152.94 152.45 742180000 93084000 77092000 93200000 0 0 0 66623000 59678000 59329000 0 0 0 50400000 50409000 54641000 0 0 0 34306000 56347000 47071000 0 0 0 14547 421 14138 273982;273983;273984;273985;273986;273987;273988;273989;273990;273991;273992;273993 168239;168240;168241;168242;168243;168244;168245;168246;168247 168246 9 MILNETAWFGR Unmodified 1336.6598 0.65979168 552 P0A9S1 fucO Lactaldehyde reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.891 45.346 2 0.00028469 22443 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 93.649 81.602 36541000 0 0 0 0 0 0 8638600 7276500 7821600 0 0 0 0 0 0 0 0 0 4559700 5374700 2869900 0 0 0 14548 552 14139 273994;273995;273996;273997;273998;273999 168248;168249 168248 1 MILSLPVTNPDVPHAGR Unmodified 1815.9665 0.96653839 602 P0AAN1 hybE Hydrogenase-2 operon protein HybE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.206 37.486 3 1.7602E-05 17332 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 86.548 85.647 236290000 0 0 0 0 0 0 23883000 30487000 34520000 4494300 3662200 2851300 0 0 32296000 0 1129300 1323200 0 51229000 49181000 1235800 0 0 14549 602 14140 274000;274001;274002;274003;274004;274005;274006;274007;274008;274009;274010;274011 168250;168251;168252;168253;168254;168255 168255 3 MILTDGKPEIDDDTGLVSYHDQQGNAMQINR Unmodified 3473.6191 0.61913202 1703 P65294 ygdR Uncharacterized lipoprotein YgdR yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.829 35.931 4 0.0015737 14108 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 49.101 49.098 156610000 15246000 0 0 1615800 834130 1302700 11554000 13869000 0 3392300 4290500 4548100 0 13825000 19830000 0 0 0 20154000 22800000 23344000 0 0 0 14550 1703 14141 274012;274013;274014;274015;274016;274017;274018;274019;274020;274021;274022;274023;274024;274025 168256;168257;168258 168257 3 MILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER Unmodified 4529.1439 0.14387 1703 P65294 ygdR Uncharacterized lipoprotein YgdR yes yes 0 0 2 By matching By MS/MS By matching By matching 1 1 1 1 43.032 41.315 5 0.15853 14633 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 7.1435 6.9147 12955000 0 0 0 3662500 3105300 2888300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3298500 14551 1703 14142 274026;274027;274028;274029 168259 168259 1 MIMLFTNSHTIR Unmodified 1462.7425 0.74247545 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 2 1 1 1 1 1 1 33.56 32.1 3 0.0036474 15767 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 63.091 62.751 444200000 53126000 43209000 48963000 0 0 0 63172000 50649000 61612000 0 0 0 19200000 16750000 21121000 0 0 0 24771000 20758000 20869000 0 0 0 14552 449 14143 274030;274031;274032;274033;274034;274035;274036;274037;274038;274039;274040;274041;274042 168260;168261;168262;168263 168260 3 MIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSR Unmodified 3729.7095 0.7095009 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 39.438 37.876 6 0.00045563 18223 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 61.555 61.554 263640000 98525000 72776000 69997000 0 0 1780800 0 0 0 0 0 0 0 0 0 0 0 0 6658500 5709300 8191300 0 0 0 14553 1168 14144 274043;274044;274045;274046;274047;274048;274049 168264;168265;168266 168266 3 MIPGFEDGIK Unmodified 1105.5478 0.54778161 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 1 2 2 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 34.808 33.312 2 0.00063698 15385 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 90.657 80.189 12924000000 925670000 904430000 785330000 12410000 13332000 14150000 863190000 890230000 906800000 40263000 42548000 38254000 1097400000 959030000 964720000 19532000 12906000 14402000 1488200000 1466600000 1395700000 26196000 22426000 20417000 14554 396 14145 274050;274051;274052;274053;274054;274055;274056;274057;274058;274059;274060;274061;274062;274063;274064;274065;274066;274067;274068;274069;274070;274071;274072;274073;274074;274075;274076;274077;274078;274079;274080;274081 168267;168268;168269;168270;168271;168272;168273;168274;168275;168276;168277;168278;168279;168280;168281;168282;168283;168284;168285;168286;168287;168288;168289;168290;168291;168292;168293;168294;168295 168293 28 MIPGFEDGIK Oxidation (M) 1121.5427 0.54269624 396 P0A850 tig Trigger factor yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 31.075 29.707 2 0.0010943 13930 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 79.906 66.64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14555 396 14145 274082;274083;274084;274085;274086;274087;274088;274089;274090 168296;168297;168298;168299;168300;168301;168302;168303;168304 168299 181 9 MIPGFEDGIKGHK Unmodified 1427.7231 0.72312022 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 20.097 20.483 4 0.12046 5974 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 16.472 16.472 7521100 0 0 0 2051400 2261700 3208000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14556 396 14146 274091;274092;274093 168305;168306 168305 2 MIPGVSYQK Unmodified 1021.5267 0.52665224 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.716 21.83 2 0.0072007 8776 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 68.214 65.637 75578000 21796000 19986000 16935000 0 0 0 0 0 0 0 0 0 0 0 3193000 1704400 0 948420 3900100 3447300 3667700 0 0 0 14557 1554 14147 274094;274095;274096;274097;274098;274099;274100;274101;274102 168307;168308 168308 2 MIQEQTMLNVADNSGAR Unmodified 1876.8771 0.87713103 820 P0ADY3 rplN 50S ribosomal protein L14 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 32.807 31.369 2;3 1.2377E-39 14807 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 324.41 322.43 4061600000 515090000 480410000 449590000 23123000 22128000 21447000 129030000 126900000 135080000 36578000 41613000 39608000 248750000 242400000 240140000 39154000 29008000 34369000 335990000 362920000 359580000 53233000 44764000 50747000 14558 820 14148 274103;274104;274105;274106;274107;274108;274109;274110;274111;274112;274113;274114;274115;274116;274117;274118;274119;274120;274121;274122;274123;274124;274125;274126;274127;274128;274129;274130;274131;274132;274133;274134;274135;274136;274137;274138;274139;274140;274141;274142;274143;274144;274145;274146;274147;274148;274149;274150 168309;168310;168311;168312;168313;168314;168315;168316;168317;168318;168319;168320;168321;168322;168323;168324;168325;168326;168327;168328;168329;168330;168331;168332;168333;168334;168335;168336;168337;168338;168339;168340;168341;168342;168343;168344;168345;168346;168347;168348;168349;168350;168351;168352;168353;168354;168355;168356 168334 48 MISAITLK Unmodified 875.51502 0.51502492 168 P07654 pstA Phosphate transport system permease protein PstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.737 27.41 2 0.012361 10291 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 75.243 72.237 570420000 0 0 0 0 0 0 47759000 47797000 41654000 10657000 11298000 10409000 47701000 57137000 54050000 2805600 1846000 1924700 72241000 78954000 56910000 10058000 8326900 8891000 14559 168 14149 274151;274152;274153;274154;274155;274156;274157;274158;274159;274160;274161;274162;274163;274164;274165;274166;274167;274168 168357;168358;168359;168360;168361;168362;168363;168364;168365;168366;168367;168368;168369;168370;168371;168372 168361 16 MISGILASPGIAFGK Unmodified 1460.8061 0.80612157 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 47.945 46.619 2;3 2.871E-11 21922 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 158.41 158.41 7227800000 488310000 461280000 469880000 10098000 7856100 7370500 626830000 639410000 48789000 15654000 18124000 15445000 867750000 786450000 755710000 12473000 7965700 10387000 565470000 665590000 718480000 11113000 9174300 8163100 14560 192 14150 274169;274170;274171;274172;274173;274174;274175;274176;274177;274178;274179;274180;274181;274182;274183;274184;274185;274186;274187;274188;274189;274190;274191;274192;274193;274194;274195;274196;274197;274198;274199;274200;274201;274202;274203;274204 168373;168374;168375;168376;168377;168378;168379;168380;168381;168382;168383;168384;168385;168386;168387;168388;168389;168390;168391;168392;168393;168394;168395;168396;168397;168398;168399;168400;168401;168402;168403;168404;168405;168406;168407;168408 168402 36 MISGILASPGIAFGK Oxidation (M) 1476.801 0.80103619 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 2 2 44.955 43.562 2 1.9458E-08 21327 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143 141.71 298730000 11958000 11294000 0 0 0 0 33427000 24962000 22843000 1024700 0 0 38411000 31698000 34607000 1478500 0 0 18317000 34568000 34141000 0 0 0 14561 192 14150 274205;274206;274207;274208;274209;274210;274211;274212;274213;274214;274215;274216;274217;274218;274219;274220;274221;274222 168409;168410;168411;168412;168413;168414;168415;168416;168417;168418;168419;168420;168421;168422;168423 168412 58 8 MISGQEQPDSGTITLGETVK Unmodified 2090.0201 0.02014968 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 32.568 31.204 2;3 1.3581E-23 15077 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 198.78 184.75 1519500000 143400000 139520000 137210000 0 0 985040 115690000 107490000 108640000 0 0 0 116680000 111860000 108350000 0 0 0 140870000 139330000 148140000 0 0 1278900 14562 561 14151 274223;274224;274225;274226;274227;274228;274229;274230;274231;274232;274233;274234;274235;274236;274237;274238;274239;274240;274241;274242;274243;274244;274245;274246;274247;274248 168424;168425;168426;168427;168428;168429;168430;168431;168432;168433;168434;168435;168436;168437;168438;168439;168440;168441;168442;168443 168424 20 MISLFDMFK Unmodified 1130.5504 0.55042415 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.222 53.743 2 0.00061972 26713 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 105.57 100.89 1090400000 65249000 60638000 57725000 0 0 0 78955000 82413000 74088000 0 2934000 0 101940000 124100000 119660000 0 0 0 123800000 95507000 103400000 0 0 0 14563 1117 14152 274249;274250;274251;274252;274253;274254;274255;274256;274257;274258;274259;274260;274261;274262 168444;168445;168446;168447;168448;168449;168450;168451;168452;168453;168454;168455;168456;168457;168458 168446 15 MISLIAALAVDR Unmodified 1271.7271 0.72714296 672 P0ABQ4 folA Dihydrofolate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.27 51.83 2 7.2979E-07 24526 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 153.1 151.07 187380000 11795000 10861000 9601600 0 0 0 13791000 12569000 14931000 0 0 0 18792000 17130000 17531000 0 0 0 19543000 19175000 21660000 0 0 0 14564 672 14153 274263;274264;274265;274266;274267;274268;274269;274270;274271;274272;274273;274274 168459;168460;168461;168462;168463;168464;168465;168466;168467;168468;168469;168470 168468 11 MISVFDIFK Unmodified 1098.5784 0.57835346 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 55.04 53.59 2 0.0032424 26390 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 82.279 44.118 419400000 27426000 24562000 26212000 8123700 9633400 11349000 24466000 17454000 17915000 4121000 3234600 0 29361000 33127000 25489000 0 0 0 49143000 47501000 53692000 4356900 0 2231300 14565 1343 14154 274275;274276;274277;274278;274279;274280;274281;274282;274283;274284;274285;274286;274287;274288;274289;274290;274291;274292;274293;274294 168471;168472;168473;168474;168475;168476;168477;168478;168479 168471 9 MITEGSNTASAEIDR Unmodified 1593.7305 0.73045002 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.115 20.508 2 1.9634E-20 8122 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 258.92 243.72 102130000 8695800 7310100 5281200 0 0 0 7998700 8722000 8724300 0 0 0 9445300 7844000 7471900 0 0 0 10431000 8588700 11620000 0 0 0 14566 1867 14155 274295;274296;274297;274298;274299;274300;274301;274302;274303;274304;274305;274306 168480;168481;168482;168483;168484;168485;168486;168487;168488;168489;168490;168491 168483 12 MITGIQITK Unmodified 1003.5736 0.57360243 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 2 2 1 1 1 2 1 2 1 1 1 1 2 2 1 1 1 28.379 27.139 2 0.00017574 9994 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 128.69 113.54 29425000000 1188600000 954780000 903900000 18564000 17604000 15532000 4501300000 4869200000 4420200000 143540000 149020000 143000000 2444000000 2493600000 2271000000 55132000 43021000 46793000 1546100000 1590600000 1547900000 19805000 20880000 21101000 14567 1717 14156 274307;274308;274309;274310;274311;274312;274313;274314;274315;274316;274317;274318;274319;274320;274321;274322;274323;274324;274325;274326;274327;274328;274329;274330;274331;274332;274333;274334;274335;274336;274337 168492;168493;168494;168495;168496;168497;168498;168499;168500;168501;168502;168503;168504;168505;168506;168507;168508;168509;168510;168511;168512;168513;168514;168515;168516;168517;168518;168519;168520;168521;168522;168523;168524;168525;168526;168527;168528;168529;168530;168531;168532;168533;168534;168535;168536;168537;168538;168539;168540;168541;168542;168543 168496 52 MITGIQITK Oxidation (M) 1019.5685 0.56851706 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 3 3 2 2 2 2 2 4 1 1 2 2 1 1 25.297 24.292 2 0.00045537 10962 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 112.84 97.691 1459500000 30649000 25972000 22278000 0 828140 920080 347730000 328950000 289940000 10213000 9200000 7085000 62456000 66861000 123730000 1137400 0 0 38344000 46215000 44936000 1051700 1019800 0 14568 1717 14156 274338;274339;274340;274341;274342;274343;274344;274345;274346;274347;274348;274349;274350;274351;274352;274353;274354;274355;274356;274357;274358;274359;274360;274361;274362;274363;274364;274365;274366;274367;274368;274369;274370;274371;274372;274373;274374;274375;274376;274377 168544;168545;168546;168547;168548;168549;168550;168551;168552;168553;168554;168555;168556;168557;168558;168559;168560;168561;168562;168563;168564;168565;168566;168567;168568;168569;168570;168571;168572;168573;168574;168575;168576;168577;168578;168579;168580;168581;168582 168562 589 34 MITHISPLGSMDMLSQLEVDMLK Unmodified 2588.2722 0.27222374 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.031 53.558 3 6.4047E-22 26664 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.06 162.65 747860000 65627000 89058000 64412000 0 0 0 57192000 56540000 63690000 0 0 0 56894000 54109000 56326000 0 0 0 61680000 62849000 59480000 0 0 0 14569 801 14157 274378;274379;274380;274381;274382;274383;274384;274385;274386;274387;274388;274389 168583;168584;168585;168586;168587;168588;168589;168590 168583 8 MITLWGR Unmodified 875.46874 0.46874343 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.099 36.417 2 0.00023343 18024 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.34 151.62 537600000 79282000 73014000 67835000 0 427190 416450 40501000 40895000 36646000 0 0 0 31736000 31955000 28362000 0 0 0 35412000 38192000 32931000 0 0 0 14570 713 14158 274390;274391;274392;274393;274394;274395;274396;274397;274398;274399;274400;274401;274402;274403 168591;168592;168593;168594;168595;168596;168597;168598;168599;168600;168601;168602 168592 12 MITVAAK Unmodified 732.4204 0.42039626 725 P0ACE7 hinT HIT-like protein HinT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 14.702 15.317 1;2 0.00030393 5086 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 135.5 104.76 2664700000 243270000 242100000 213940000 5994900 6055100 6280500 258190000 278980000 277890000 6945900 6716800 7282300 183520000 167710000 153460000 0 0 1494600 228810000 188320000 169990000 4509000 6992700 6277800 14571 725 14159 274404;274405;274406;274407;274408;274409;274410;274411;274412;274413;274414;274415;274416;274417;274418;274419;274420;274421;274422;274423;274424;274425;274426;274427;274428;274429;274430;274431;274432;274433;274434;274435;274436;274437;274438;274439;274440;274441;274442;274443;274444;274445 168603;168604;168605;168606;168607;168608;168609;168610;168611;168612;168613;168614;168615;168616;168617;168618;168619 168609 14 MIVQPLAIIGSHFDSIAAGNLAR Unmodified 2393.2889 0.28893516 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 53.979 52.625 3 0.022753 19263 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 43.799 43.362 20740000 5871500 0 6027400 4709900 0 4131200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14572 152 14160 274446;274447;274448;274449 168620;168621 168620 0 MIVTGYSSGMVECR Unmodified 1588.7048 0.70476932 1681 P64517 yodC Uncharacterized protein YodC yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 30.581 29.118 2 0.00056248 13893 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.64 71.4 65921000 0 0 0 0 0 0 16428000 10602000 15557000 0 0 0 0 5725600 4114700 0 0 0 5704300 4931600 2857700 0 0 0 14573 1681 14161 274450;274451;274452;274453;274454;274455;274456;274457 168622;168623 168622 0 MIWNYAGNCLINQHSEINR Unmodified 2332.0841 0.084104116 1152 P18775 dmsA Dimethyl sulfoxide reductase DmsA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 38.472 36.631 3 5.6227E-07 17101 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 88.565 80.761 63768000 0 0 0 0 0 0 0 5922900 7555900 0 4363500 4218700 6793800 8942600 6900200 0 0 0 5990300 7549800 5530600 0 0 0 14574 1152 14162 274458;274459;274460;274461;274462;274463;274464;274465;274466;274467 168624;168625;168626;168627;168628 168627 5 MIYPDEAMLYAPVEWHDCSEGFEDIR Unmodified 3172.3616 0.36164369 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 53.701 52.291 3 3.2354E-22 25981 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 161.53 161.25 2147000000 127020000 114260000 112970000 11182000 8177500 10105000 187590000 163790000 155780000 0 0 0 231600000 204540000 181830000 0 0 0 178450000 198590000 181900000 24806000 27148000 27257000 14575 679 14163 274468;274469;274470;274471;274472;274473;274474;274475;274476;274477;274478;274479;274480;274481;274482;274483;274484;274485;274486 168629;168630;168631;168632;168633;168634;168635;168636;168637;168638;168639;168640;168641;168642;168643;168644;168645;168646 168629 18 MIYPDEAMLYAPVEWHDCSEGFEDIRYEK Unmodified 3592.5625 0.56252834 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 2 2 2 51.085 49.799 3;4 5.6618E-23 19780 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 167.23 167.23 596810000 0 0 0 54151000 45872000 54607000 0 0 0 0 6737000 5478600 30842000 21825000 23715000 0 0 0 0 0 0 123660000 122190000 107740000 14576 679 14164 274487;274488;274489;274490;274491;274492;274493;274494;274495;274496;274497;274498;274499;274500;274501;274502;274503;274504;274505 168647;168648;168649;168650;168651;168652;168653;168654 168647 8 MIYSTLAEELSTTVHALALHTYTIK Unmodified 2805.4623 0.46226766 653 P0ABE2 bolA Protein BolA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.728 53.27 4 2.4763E-15 26365 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.64 138.51 732220000 81388000 70226000 71627000 0 0 1391900 82490000 60825000 69496000 5956000 3631600 5768900 53152000 49204000 47316000 0 0 0 49780000 43291000 36674000 0 0 0 14577 653 14165 274506;274507;274508;274509;274510;274511;274512;274513;274514;274515;274516;274517;274518;274519;274520;274521 168655;168656;168657;168658;168659;168660;168661;168662 168657 8 MKADNPFDLLLPAAMAK Unmodified 1844.9529 0.95286216 694 P0AC23 focA Probable formate transporter 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 52.617 51.488 3 9.1743E-06 21046 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 88.133 72.249 47985000 0 0 0 1992100 1873500 2828300 0 0 0 6309300 13155000 9500300 0 0 0 0 2809500 3652400 0 0 0 2489400 3375800 0 14578 694 14166 274522;274523;274524;274525;274526;274527;274528;274529;274530;274531;274532 168663;168664;168665 168663 3 MKAKELR Acetyl (Protein N-term) 916.51642 0.51642191 357 P0A7M6 rpmC 50S ribosomal protein L29 yes yes 1 0 2 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.818 28.292 2 0.10988 13182 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 43.066 18.068 695800000 8468700 8304800 9067500 147410000 120260000 143300000 3136100 0 0 5075300 0 6634300 1467800 0 0 0 0 0 0 4890900 0 79588000 78912000 79286000 14579 357 14167 274533;274534;274535;274536;274537;274538;274539;274540;274541;274542;274543;274544;274545;274546 168666 168666 0 MKDDAIIILDPVNQDVITDGLNNGIR Unmodified 2851.475 0.47495761 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 52.449 51.197 3 3.9037E-22 24893 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 158.8 154.25 1271500000 210670000 187400000 179740000 0 0 4473900 82444000 67533000 78282000 0 0 0 68178000 63102000 55375000 0 0 0 84039000 96568000 93669000 0 0 0 14580 549 14168 274547;274548;274549;274550;274551;274552;274553;274554;274555;274556;274557;274558;274559 168667;168668;168669;168670;168671;168672;168673;168674;168675;168676;168677;168678 168671 12 MKDEEWNDIIETNLSSVFR Unmodified 2325.0947 0.094711606 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 2 2 2 54.092 52.76 2;3 1.2283E-95 25938 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 438.46 433.57 4943900000 325800000 324790000 320550000 4166100 2953000 3594700 311840000 277810000 252590000 0 1483400 0 557230000 514510000 520730000 9109800 0 7911700 554950000 470380000 483470000 0 0 0 14581 868 14169 274560;274561;274562;274563;274564;274565;274566;274567;274568;274569;274570;274571;274572;274573;274574;274575;274576;274577;274578;274579;274580;274581;274582;274583;274584;274585;274586;274587;274588;274589 168679;168680;168681;168682;168683;168684;168685;168686;168687;168688;168689;168690;168691;168692;168693;168694;168695;168696;168697;168698;168699;168700;168701;168702;168703 168695 24 MKDEEWNDIIETNLSSVFR Oxidation (M) 2341.0896 0.089626228 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 1 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.586 52.146 3 1.1346E-14 25541 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 153.68 150.62 278460000 23629000 24780000 21801000 0 0 0 13720000 11716000 10779000 0 0 0 22687000 27927000 28377000 0 0 0 31320000 31965000 29763000 0 0 0 14582 868 14169 274590;274591;274592;274593;274594;274595;274596;274597;274598;274599;274600;274601 168704;168705;168706;168707 168704 397 4 MKDIDTLISNNALWSK Unmodified 1847.9451 0.94513424 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 42.85 41.243 2;3 9.0223E-24 19980 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 216.15 206.26 820930000 115870000 95498000 95639000 1503200 1616600 1154600 51605000 51441000 38790000 0 0 0 44541000 46921000 45089000 0 0 0 73744000 71475000 86048000 0 0 0 14583 1639 14170 274602;274603;274604;274605;274606;274607;274608;274609;274610;274611;274612;274613;274614;274615;274616;274617;274618;274619;274620;274621;274622;274623;274624;274625;274626;274627;274628 168708;168709;168710;168711;168712;168713;168714;168715;168716;168717;168718;168719;168720;168721;168722;168723;168724;168725;168726;168727 168722 20 MKDLIPR Unmodified 871.49496 0.49495818 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.601 17.126 2 0.015935 4826 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 88.029 75.598 108570000 6576400 6278600 6242200 0 0 1330400 3869100 0 4379200 2708500 0 0 6749200 0 5491600 25006000 8652600 0 0 6859900 0 6949000 5912000 11569000 14584 1633 14171 274629;274630;274631;274632;274633;274634;274635;274636;274637;274638;274639;274640;274641;274642;274643 168728 168728 1 MKDVVDK Unmodified 833.43169 0.43168922 1391 P32162 yiiS UPF0381 protein YiiS yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 10.522 11.376 2 0.021854 2667 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.568 57.606 158830000 0 47627000 39986000 0 0 0 0 0 0 0 0 0 22137000 23150000 25933000 0 0 0 0 0 0 0 0 0 14585 1391 14172 274644;274645;274646;274647;274648 168729;168730 168729 2 MKEEVASGQIK Unmodified 1218.6278 0.62782285 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 12.116 12.582 2 0.00027409 2928 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 109.79 98.427 31946000 0 0 0 0 0 1584900 0 8116600 0 8190000 6815800 7238400 0 0 0 0 0 0 0 0 0 0 0 0 14586 1477 14173 274649;274650;274651;274652;274653 168731;168732;168733 168731 3 MKEGQEK Unmodified 848.4062 0.40620276 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 4.712 5.6194 2 0.0026238 1113 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.57 91.979 255480000 35936000 45018000 34485000 171990 161090 181720 0 0 0 0 0 0 18908000 535090 20555000 0 0 0 34595000 33550000 31385000 0 0 0 14587 295 14174 274654;274655;274656;274657;274658;274659;274660;274661;274662;274663;274664;274665 168734;168735;168736;168737;168738;168739;168740 168736 7 MKETVTVEPK Unmodified 1160.6111 0.61111015 425 P0A8F4 udk Uridine kinase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 2 2 2 2 1 1 2 2 2 1 1 2 1 2 1 2 2 2 12.473 13.057 2;3 0.016398 3067 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 55.806 45.498 286390000 0 4795100 2664600 12698000 14355000 11332000 15449000 6111800 7408500 35388000 36782000 36701000 0 5160100 3571400 11072000 0 6901200 9493600 5075400 0 20392000 20580000 20459000 14588 425 14175 274666;274667;274668;274669;274670;274671;274672;274673;274674;274675;274676;274677;274678;274679;274680;274681;274682;274683;274684;274685;274686;274687;274688;274689;274690;274691;274692;274693;274694;274695;274696;274697 168741;168742;168743 168741 3 MKFTVER Oxidation (M) 925.46914 0.46913736 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS 1 1 1 12.492 12.709 2 0.0044159 2924 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 105.39 96.043 35174000 0 0 0 0 0 0 0 0 0 14903000 11009000 9262100 0 0 0 0 0 0 0 0 0 0 0 0 14589 497 14176 274698;274699;274700 168744;168745;168746 168746 295 3 MKFTVER Unmodified 909.47422 0.47422274 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 15.755 15.81 2 0.00025295 4288 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 170.06 164.52 492720000 0 0 0 0 0 0 0 0 0 170390000 165270000 157060000 0 0 0 0 0 0 0 0 0 0 0 0 14590 497 14176 274701;274702;274703 168747;168748;168749 168749 3 MKGEMPSDFDAK Unmodified 1354.5897 0.58972278 1299 P27302 tktA Transketolase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 1 17.256 17.88 2;3 6.6437E-08 6479 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 184.24 184.24 4755400000 226660000 215460000 211080000 845820 895310 1270300 476250000 483360000 457520000 979980 1374700 0 423280000 405580000 416200000 0 0 0 474200000 480200000 479110000 1106600 0 0 14591 1299 14177 274704;274705;274706;274707;274708;274709;274710;274711;274712;274713;274714;274715;274716;274717;274718;274719;274720;274721;274722;274723;274724;274725;274726;274727;274728;274729;274730;274731;274732;274733;274734 168750;168751;168752;168753;168754;168755;168756;168757;168758;168759;168760;168761;168762;168763;168764;168765;168766 168757 17 MKGEMPSDFDAK Oxidation (M) 1370.5846 0.58463741 1299 P27302 tktA Transketolase 1 yes yes 0 1 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 2 2 2 2 2 2 2 2 1 15.753 16.481 2;3 0.019464 6181 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 45.357 45.357 85328000 2850100 0 4242200 0 0 0 10074000 12391000 11891000 0 0 0 8038300 7712300 6607000 0 0 0 9022900 8321300 4177100 0 0 0 14592 1299 14177 274735;274736;274737;274738;274739;274740;274741;274742;274743;274744;274745;274746;274747;274748;274749;274750;274751;274752;274753 168767;168768 168768 528 2 MKGENWYR Unmodified 1082.4967 0.4967491 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 13.628 14.494 3 0.052811 4636 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 47.082 38.219 125120000 18061000 16692000 15860000 0 0 0 31503000 0 0 0 0 0 0 15308000 9941800 0 0 0 9267400 8484600 0 0 0 0 14593 283 14178 274754;274755;274756;274757;274758;274759;274760;274761 168769 168769 1 MKHESNYLR Unmodified 1176.571 0.57097667 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.622 11.394 2 0.13179 2743 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 49.57 40.707 187860000 22383000 18307000 19904000 0 0 0 14205000 14444000 12228000 0 0 0 11504000 11368000 9654600 0 0 0 19742000 16028000 16320000 1769700 0 0 14594 1143 14179 274762;274763;274764;274765;274766;274767;274768;274769;274770;274771;274772;274773;274774 168770;168771 168770 2 MKLPIYLDYSATTPVDPR Unmodified 2079.0711 0.071063038 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.729 43.11 3 0.0033394 15261 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 54.974 52.23 216120000 21576000 23300000 17066000 7520500 5645500 8177700 13400000 9416200 11725000 3004300 3342700 2906400 6617300 8305600 5846100 2958000 0 0 16358000 15115000 13029000 6818000 5998200 7997900 14595 228 14180 274775;274776;274777;274778;274779;274780;274781;274782;274783;274784;274785;274786;274787;274788;274789;274790;274791;274792;274793;274794;274795;274796 168772;168773;168774;168775;168776;168777;168778;168779;168780;168781 168777 10 MKNIDWLDGEGNDQVQESVK Unmodified 2304.0692 0.069225137 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 34.109 32.07 3 1.0865E-10 12221 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 129.46 126.32 27675000 0 0 0 0 0 0 0 0 0 0 1865400 1402100 0 0 0 0 0 0 0 0 0 8220700 8071300 8115500 14596 205 14181 274797;274798;274799;274800;274801 168782;168783;168784 168782 3 MKNLIAELLFK Unmodified 1318.7683 0.7682795 605 P0AAN9 iraP Anti-adapter protein IraP yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 47.982 48.038 3 0.067015 17457 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 37.18 36.989 6853400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2167000 2678800 2007500 0 0 0 0 0 0 14597 605 14182 274802;274803;274804 168785 168785 1 MKPFIFGAR Unmodified 1065.5794 0.57935651 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 28.186 26.955 2;3 0.00034924 8681 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 85.161 81.667 2281100000 152760000 183100000 165690000 22626000 20878000 22461000 66620000 68494000 60930000 99195000 89454000 78813000 111330000 89045000 85764000 84894000 60312000 75434000 208970000 202170000 150870000 57101000 58916000 65265000 14598 373 14183 274805;274806;274807;274808;274809;274810;274811;274812;274813;274814;274815;274816;274817;274818;274819;274820;274821;274822;274823;274824;274825;274826;274827;274828;274829;274830;274831;274832;274833;274834;274835;274836;274837;274838;274839;274840;274841;274842;274843;274844;274845;274846;274847;274848;274849 168786;168787;168788;168789;168790;168791;168792;168793;168794;168795;168796;168797;168798;168799;168800;168801;168802;168803;168804;168805;168806;168807;168808;168809;168810;168811;168812;168813;168814;168815;168816;168817;168818;168819 168786 34 MKPFIFGAR Oxidation (M) 1081.5743 0.57427114 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 1 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.251 22.489 3 0.029424 8165 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 51.346 38.309 24995000 0 2347900 3037200 1426000 1523700 316830 0 899040 0 2348100 0 1565400 1736300 1180400 0 0 0 0 2515600 3302400 0 0 0 2796300 14599 373 14183 274850;274851;274852;274853;274854;274855;274856;274857;274858;274859;274860;274861;274862 168820 168820 159 1 MKPFTFWLAK Unmodified 1267.6787 0.67873621 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 43.019 40.89 3 0.1439 16892 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 25.238 12.282 20925000 0 0 0 1650100 1027100 869170 0 0 0 4267900 3934600 2846700 0 0 0 0 0 0 0 0 0 1828000 2363000 2138600 14600 1058 14184 274863;274864;274865;274866;274867;274868;274869;274870;274871 168821 168821 1 MKPSVILYK Unmodified 1077.6256 0.62563801 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 1 1 19.764 20.231 2;3 0.0051212 7697 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 83.265 73.278 1096700000 112600000 99626000 104300000 0 0 0 104490000 93344000 105980000 0 0 0 89113000 92654000 87704000 0 0 0 92538000 74416000 39692000 0 0 259240 14601 1485 14185 274872;274873;274874;274875;274876;274877;274878;274879;274880;274881;274882;274883;274884;274885;274886;274887;274888;274889;274890;274891;274892;274893;274894;274895 168822;168823;168824;168825;168826;168827;168828;168829;168830;168831;168832;168833;168834;168835;168836;168837;168838 168834 17 MKQTVAAYIAK Unmodified 1222.6744 0.67437911 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 16.749 17.243 3 0.022894 4523 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 46.352 41.293 20370000 0 0 0 4981700 5399800 6871600 0 0 0 0 2827800 0 0 0 0 0 289530 0 0 0 0 0 0 0 14602 147 14186 274896;274897;274898;274899;274900 168839;168840 168839 2 MKTPLVTR Unmodified 944.54772 0.54772204 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 14.552 14.63 2 0.015891 3592 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 80.438 69.565 51074000 0 0 0 0 0 0 0 0 0 7963500 5732900 6088600 0 0 0 13122000 4411000 2041300 0 0 0 3546900 4130000 4037500 14603 1338 14187 274901;274902;274903;274904;274905;274906;274907;274908;274909 168841;168842;168843;168844;168845;168846;168847;168848 168842 8 MKVDEMVTVR Unmodified 1206.6101 0.6100643 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 21.931 21.743 2;3 0.0019282 9281 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.65 59.127 412130000 51521000 41607000 40604000 5911800 4292400 5819400 30063000 23275000 22573000 7706200 6474800 6278000 16223000 15281000 0 0 2494400 1553500 35416000 42811000 39858000 4282500 3730500 4351900 14604 279 14188 274910;274911;274912;274913;274914;274915;274916;274917;274918;274919;274920;274921;274922;274923;274924;274925;274926;274927;274928;274929;274930;274931;274932;274933;274934;274935;274936;274937;274938;274939;274940;274941;274942;274943;274944;274945;274946;274947;274948;274949;274950 168849;168850;168851;168852;168853;168854;168855;168856;168857;168858;168859;168860;168861 168853 13 MLAALSQASLIHIK Unmodified 1494.8592 0.85921977 1602 P52095 ldcC Lysine decarboxylase, constitutive yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.83 36.939 3 0.008998 14625 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 50.088 48.24 75140000 9701700 6057800 6375500 0 402670 0 10402000 10491000 8817000 1935200 1386000 3295900 2719000 2538300 0 0 0 0 3820200 4180600 2302100 715430 0 0 14605 1602 14189 274951;274952;274953;274954;274955;274956;274957;274958;274959;274960;274961;274962;274963;274964;274965;274966 168862 168862 1 MLADCGGAQR Unmodified 1077.4695 0.46954807 1546 P39835 gntT High-affinity gluconate transporter yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.537 13.13 2 0.00019016 3034 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 122.18 119.47 436210000 24884000 25008000 21058000 0 0 0 37072000 29715000 0 12357000 11050000 11394000 40905000 41503000 38547000 0 2749500 0 34482000 37168000 44866000 7309300 9073200 7067700 14606 1546 14190 274967;274968;274969;274970;274971;274972;274973;274974;274975;274976;274977;274978;274979;274980;274981;274982;274983;274984;274985 168863;168864;168865;168866;168867;168868;168869;168870;168871;168872;168873;168874;168875 168870 13 MLAESEPR Unmodified 931.44332 0.44331654 1238 P24188 yceA UPF0176 protein YceA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 12.845 13.81 2 0.0019937 4181 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 104.21 80.01 42469000 0 0 0 0 0 0 0 0 0 0 0 0 5527300 4135800 4792600 0 0 0 13095000 0 14919000 0 0 0 14607 1238 14191 274986;274987;274988;274989;274990;274991 168876;168877;168878;168879;168880 168876 5 MLAHCEAVTPIR Oxidation (M) 1412.6904 0.69043988 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 4 4 3 4 3 3 3 16.422 17.157 2;3 9.8589E-07 5603 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.81 146.51 432460000 38332000 32439000 26416000 0 0 0 48330000 43116000 41319000 0 0 0 32917000 21701000 34076000 0 0 0 41260000 36901000 35653000 0 0 0 14608 869 14192 274992;274993;274994;274995;274996;274997;274998;274999;275000;275001;275002;275003;275004;275005;275006;275007;275008;275009;275010;275011;275012;275013;275014;275015;275016;275017;275018;275019;275020;275021;275022;275023;275024;275025;275026;275027;275028;275029 168881;168882;168883;168884;168885;168886;168887;168888;168889;168890;168891;168892;168893;168894;168895;168896;168897;168898;168899;168900;168901;168902;168903;168904;168905;168906 168895 399 26 MLAHCEAVTPIR Unmodified 1396.6955 0.69552526 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 17.896 18.509 2;3 3.7935E-23 6819 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 229.17 217.32 14164000000 1234900000 1251100000 1063900000 0 0 0 949960000 955560000 1120300000 0 0 0 1226500000 1121500000 1030200000 0 0 0 1197500000 1484700000 1527600000 0 0 0 14609 869 14192 275030;275031;275032;275033;275034;275035;275036;275037;275038;275039;275040;275041;275042;275043;275044;275045;275046;275047;275048;275049;275050;275051;275052;275053 168907;168908;168909;168910;168911;168912;168913;168914;168915;168916;168917;168918;168919;168920;168921;168922;168923;168924;168925;168926;168927;168928;168929;168930 168916 24 MLAHCEAVTPIRR Unmodified 1552.7966 0.79663629 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 2 2 2 1 1 2 2 2 3 3 3 2 1 2 3 3 1 1 14.029 14.745 2;3;4 1.4688E-17 4774 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 255.7 241.45 1593500000 193070000 181540000 96465000 6238600 4893100 5770000 168350000 64508000 77739000 4862300 3012200 4743900 108110000 105510000 103270000 6775300 0 2138100 107900000 166200000 177570000 2381800 2479800 0 14610 869 14193 275054;275055;275056;275057;275058;275059;275060;275061;275062;275063;275064;275065;275066;275067;275068;275069;275070;275071;275072;275073;275074;275075;275076;275077;275078;275079;275080;275081;275082;275083;275084;275085;275086;275087;275088;275089;275090;275091;275092;275093;275094;275095;275096;275097;275098;275099;275100 168931;168932;168933;168934;168935;168936;168937;168938;168939;168940;168941;168942;168943;168944;168945;168946;168947;168948;168949;168950;168951;168952;168953 168942 23 MLAMVLHGMQGTPYIYQGEEIGMTNPHFTR Unmodified 3421.608 0.60797917 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 46.76 45.306 3;4;5 6.3465E-67 22013 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 250.95 248.73 1411400000 0 0 0 0 0 0 115070000 125710000 144550000 0 0 0 166570000 133400000 133680000 0 0 0 194300000 175140000 222940000 0 0 0 14611 1324 14194 275101;275102;275103;275104;275105;275106;275107;275108;275109;275110;275111;275112;275113;275114;275115;275116;275117;275118;275119;275120;275121;275122;275123;275124;275125;275126;275127 168954;168955;168956;168957;168958;168959;168960;168961;168962;168963 168959 9 MLDAGMNVMR Oxidation (M) 1152.509 0.50897004 771 P0AD61 pykF Pyruvate kinase I yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 4 3 3 3 4 3 6 6 5 1 1 1 4 4 4 24.216 23.461 2 8.4987E-05 11119 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.55 131.36 1533300000 142380000 119510000 107980000 0 0 0 111140000 113730000 117480000 0 0 0 103360000 112390000 90159000 4008600 2229300 2582100 166680000 174670000 164990000 0 0 0 14612 771 14195 275128;275129;275130;275131;275132;275133;275134;275135;275136;275137;275138;275139;275140;275141;275142;275143;275144;275145;275146;275147;275148;275149;275150;275151;275152;275153;275154;275155;275156;275157;275158;275159;275160;275161;275162;275163;275164;275165;275166;275167;275168;275169;275170;275171;275172;275173;275174;275175;275176;275177;275178;275179 168964;168965;168966;168967;168968;168969;168970;168971;168972;168973;168974;168975;168976;168977;168978;168979;168980;168981;168982 168974 383;384 17 MLDAGMNVMR Unmodified 1136.5141 0.51405542 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 30.279 29.05 2 6.4784E-09 13466 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 163.77 153.36 5057500000 41263000 405680000 381890000 0 1153900 0 496640000 462970000 463150000 0 0 1726700 511220000 518490000 420280000 1064200 839460 901900 445980000 450460000 451160000 1751100 0 867960 14613 771 14195 275180;275181;275182;275183;275184;275185;275186;275187;275188;275189;275190;275191;275192;275193;275194;275195;275196;275197;275198;275199;275200;275201;275202;275203;275204;275205;275206;275207 168983;168984;168985;168986;168987;168988;168989;168990;168991;168992;168993;168994;168995;168996 168989 14 MLDAQTIATVK Unmodified 1189.6377 0.63765925 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 29.142 27.883 2 9.0155E-05 12277 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 121.73 107.74 465730000 47292000 48249000 42540000 0 1107400 1118200 37396000 36197000 35082000 0 0 0 34928000 39844000 31013000 0 0 0 33431000 43688000 33844000 0 0 0 14614 1246 14196 275208;275209;275210;275211;275212;275213;275214;275215;275216;275217;275218;275219;275220;275221;275222 168997;168998;168999;169000;169001;169002;169003;169004;169005 169005 9 MLDASHVVVFCAK Unmodified 1475.7265 0.72649104 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.74 31.334 2 2.3218E-13 14831 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 201.75 200.49 297660000 30295000 22670000 21850000 0 0 0 34922000 24750000 30810000 0 0 0 14802000 17228000 16974000 0 0 0 29462000 28114000 25785000 0 0 0 14615 1505 14197 275223;275224;275225;275226;275227;275228;275229;275230;275231;275232;275233;275234 169006;169007;169008;169009;169010;169011;169012;169013;169014;169015;169016 169010 11 MLDGGDNPLR Oxidation (M) 1102.5077 0.50770771 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching 4 6 5 1 22.132 21.351 2 3.2106E-05 6179 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 147.19 121.29 479560000 0 0 0 0 0 0 0 0 0 175780000 159020000 144000000 0 0 0 0 0 0 0 0 0 756300 0 0 14616 497 14198 275235;275236;275237;275238;275239;275240;275241;275242;275243;275244;275245;275246;275247;275248;275249;275250 169017;169018;169019;169020;169021;169022;169023;169024;169025;169026;169027;169028;169029;169030;169031;169032;169033 169029 296 13 MLDGGDNPLR Unmodified 1086.5128 0.51279309 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 3 2 2 1 1 1 1 1 1 1 1 1 25.052 23.835 2;3 9.4878E-07 8582 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 170.22 141.07 8701900000 68949000 56030000 52517000 0 1914800 0 0 71438000 0 3015700000 2521000000 2576400000 44458000 37529000 35595000 0 0 0 56353000 59110000 55525000 17368000 16024000 15954000 14617 497 14198 275251;275252;275253;275254;275255;275256;275257;275258;275259;275260;275261;275262;275263;275264;275265;275266;275267;275268;275269;275270;275271;275272;275273 169034;169035;169036;169037;169038;169039;169040;169041;169042;169043;169044;169045;169046;169047;169048;169049;169050;169051;169052;169053;169054;169055;169056;169057;169058 169034 25 MLDLICPK Unmodified 988.50856 0.50855934 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.856 33.4 2 0.0016084 15790 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.43 90.874 456770000 97626000 97484000 76766000 0 0 0 27313000 32760000 27829000 0 0 0 14294000 14288000 14194000 0 0 0 18755000 16970000 18490000 0 0 0 14618 1091 14199 275274;275275;275276;275277;275278;275279;275280;275281;275282;275283;275284;275285 169059;169060;169061;169062;169063;169064;169065;169066;169067;169068;169069;169070 169067 12 MLDMGFAQDIEHIAGETR Unmodified 2032.9346 0.93464591 1182 P21507 srmB ATP-dependent RNA helicase SrmB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.446 49.12 3 2.6117E-07 24064 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 108.18 107.34 77741000 20927000 21752000 23445000 903330 0 0 0 0 0 0 0 0 2174100 0 1593200 0 0 0 0 4143400 2802000 0 0 0 14619 1182 14200 275286;275287;275288;275289;275290;275291;275292;275293 169071;169072;169073 169072 3 MLDMGFIHDIR Unmodified 1346.6475 0.64751243 1275 P25888 rhlE ATP-dependent RNA helicase RhlE yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 41.357 39.868 3 0.00056488 19568 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.451 66.322 31612000 7687500 6164100 7222900 0 0 0 0 0 0 0 0 0 2068300 0 1735600 0 0 0 0 3449700 3283600 0 0 0 14620 1275 14201 275294;275295;275296;275297;275298;275299;275300 169074 169074 1 MLDNVLR Unmodified 859.45857 0.45857268 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 26.576 25.448 2 0.0010277 11012 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 138.48 96.005 215930000 0 0 0 0 0 0 24135000 23664000 21715000 0 0 0 21536000 22938000 20564000 0 0 0 27223000 28461000 25692000 0 0 0 14621 137 14202 275301;275302;275303;275304;275305;275306;275307;275308;275309 169075;169076;169077;169078 169076 4 MLDPFMQYSCAYWK Unmodified 1838.783 0.78301964 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.901 51.544 2 3.4235E-09 25417 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 156.71 155.64 308660000 16540000 20772000 15565000 0 0 0 56108000 57909000 52612000 8583900 10337000 9880900 10356000 9300900 7671200 0 0 0 11225000 9777000 12025000 0 0 0 14622 522 14203 275310;275311;275312;275313;275314;275315;275316;275317;275318;275319;275320;275321;275322;275323;275324 169079;169080;169081;169082;169083;169084;169085;169086;169087;169088;169089;169090 169084 12 MLDPNLLR Unmodified 970.52699 0.52698659 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 33.805 32.261 2 0.00017849 15666 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.09 135.29 4586600000 332810000 312200000 277800000 0 0 0 388020000 445980000 465800000 1334900 0 0 375670000 373230000 373510000 0 0 0 390600000 431390000 418250000 0 0 0 14623 441 14204 275325;275326;275327;275328;275329;275330;275331;275332;275333;275334;275335;275336;275337 169091;169092;169093;169094;169095;169096;169097;169098;169099;169100;169101;169102 169092 12 MLDPNLLR Oxidation (M) 986.5219 0.52190122 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 2 2 2 2 2 1 2 30.74 29.412 2 0.039029 12412 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 61.561 59.501 156530000 6901200 2964100 7221400 0 0 0 20696000 24979000 21072000 0 0 0 10781000 10359000 11257000 0 0 0 15764000 12394000 12139000 0 0 0 14624 441 14204 275338;275339;275340;275341;275342;275343;275344;275345;275346;275347;275348;275349;275350;275351;275352;275353;275354;275355;275356 169103;169104;169105;169106 169106 214 2 MLDQVCQLAR Unmodified 1232.6006 0.60056224 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 29.423 28.086 2 2.0923E-06 13248 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.86 135.77 526670000 92388000 91803000 110390000 1770000 1196900 1419000 46210000 38015000 40457000 0 0 0 1277000 0 0 0 0 0 32372000 33705000 35667000 0 0 0 14625 1193 14205 275357;275358;275359;275360;275361;275362;275363;275364;275365;275366;275367;275368;275369 169107;169108 169108 1 MLDTNMK Unmodified 851.38811 0.38810985 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.87 15.582 2 0.00097355 4888 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.92 85.391 1016500000 66121000 55787000 59421000 1459700 0 1024400 122250000 114470000 115960000 1439500 0 0 89599000 74524000 65092000 0 0 0 83142000 85533000 79755000 0 0 935200 14626 1437 14206 275370;275371;275372;275373;275374;275375;275376;275377;275378;275379;275380;275381;275382;275383;275384;275385 169109;169110;169111;169112;169113;169114;169115;169116;169117;169118 169117 10 MLDTTLAMATVAFR Unmodified 1539.7789 0.77892054 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 52.459 51.18 2 3.2157E-06 24710 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 120.77 93.656 94943000 0 0 2253700 0 0 0 2239000 6100300 0 0 0 0 11400000 9863400 12774000 0 0 0 18914000 17386000 14012000 0 0 0 14627 505 14207 275386;275387;275388;275389;275390;275391;275392;275393;275394 169119;169120 169119 2 MLEAGESALDVVTEAVR Unmodified 1788.8928 0.89276432 1473 P37595 iaaA Isoaspartyl peptidase;Isoaspartyl peptidase subunit alpha;Isoaspartyl peptidase subunit beta yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 2 2 2 2 2 2 2 50.872 49.65 2;3 2.4154E-09 23154 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 158.2 130.72 165090000 13686000 22584000 22610000 0 0 0 0 7129400 14535000 0 0 0 13954000 11302000 12550000 0 0 0 15854000 12821000 18066000 0 0 0 14628 1473 14208 275395;275396;275397;275398;275399;275400;275401;275402;275403;275404;275405;275406;275407;275408;275409;275410;275411;275412;275413;275414 169121;169122;169123 169123 3 MLEDELGIQIFSR Unmodified 1549.781 0.78102903 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 1 52.176 51.571 2;3 6.0678E-24 20064 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 236.77 229.64 184300000 0 0 0 0 0 0 0 0 0 3599900 2836200 2960000 0 0 4094200 56956000 59892000 50533000 0 0 0 3427300 0 0 14629 515 14209 275415;275416;275417;275418;275419;275420;275421;275422;275423;275424;275425 169124;169125;169126;169127;169128;169129 169124 6 MLEDQNLISAHGK Unmodified 1454.7188 0.71876312 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 20.991 21.188 2;3 9.7847E-24 8406 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 229.53 213.99 800560000 180050000 137980000 38147000 0 5255700 5871700 46226000 46543000 54886000 4403700 6937700 6893500 7849600 39430000 36409000 0 0 0 56342000 56850000 57969000 5532000 3778700 3199400 14630 734 14210 275426;275427;275428;275429;275430;275431;275432;275433;275434;275435;275436;275437;275438;275439;275440;275441;275442;275443;275444;275445;275446;275447;275448;275449;275450;275451;275452;275453;275454;275455;275456 169130;169131;169132;169133;169134;169135;169136;169137;169138;169139;169140;169141;169142;169143 169137 14 MLEEISSVK Unmodified 1034.5318 0.5317972 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.422 23.454 2 0.0011011 10237 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.162 86.338 6555700000 1384800000 1326800000 1281300000 4841000 4285200 4571300 327060000 312110000 282200000 8146200 8944100 9597800 152040000 152490000 168390000 0 1205500 0 382620000 380760000 363470000 0 0 0 14631 657 14211 275457;275458;275459;275460;275461;275462;275463;275464;275465;275466;275467;275468;275469;275470;275471;275472;275473;275474;275475 169144;169145;169146;169147;169148;169149;169150;169151;169152;169153;169154;169155;169156;169157;169158 169153 13 MLEEISSVK Oxidation (M) 1050.5267 0.52671182 657 P0ABH7 gltA Citrate synthase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 18.343 18.923 2 0.00098344 6936 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.64 92.403 39816000 7649100 8226200 9062200 0 0 0 0 0 3491400 0 0 0 0 0 0 0 0 0 0 11387000 0 0 0 0 14632 657 14211 275476;275477;275478;275479;275480 169159;169160;169161 169161 361 3 MLEEYRK Unmodified 967.4797 0.47970205 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.037 12.819 2 0.0016102 3610 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.72 116.01 1305300000 178120000 197660000 217410000 2169500 2419900 2110100 67097000 60134000 58637000 0 1721300 1531400 55648000 52591000 69299000 0 0 0 123840000 107950000 105230000 1703400 0 0 14633 1444 14212 275481;275482;275483;275484;275485;275486;275487;275488;275489;275490;275491;275492;275493;275494;275495;275496;275497;275498 169162;169163;169164;169165;169166;169167;169168;169169;169170;169171;169172 169165 11 MLEGVDVK Unmodified 889.4579 0.45790397 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.299 21.465 2 0.0039041 8275 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 89.142 31.679 1528700000 64790000 57563000 56888000 864200 0 735900 125800000 119310000 137070000 0 832550 0 145440000 122530000 128580000 0 0 0 196420000 181890000 185150000 1535000 1506900 1788500 14634 1491 14213 275499;275500;275501;275502;275503;275504;275505;275506;275507;275508;275509;275510;275511;275512;275513;275514;275515;275516 169173;169174;169175;169176;169177;169178;169179;169180 169178 8 MLEMGLNK Unmodified 934.46161 0.46160914 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 1 25.071 24.094 1;2 0.00063391 10703 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.67 116.68 676030000 99345000 95492000 101300000 0 0 0 49315000 41090000 38841000 0 0 0 54994000 4540200 39590000 0 0 0 67421000 79268000 4838600 0 0 0 14635 444 14214 275517;275518;275519;275520;275521;275522;275523;275524;275525;275526;275527;275528;275529;275530;275531;275532;275533;275534;275535;275536;275537;275538 169181;169182;169183;169184;169185;169186;169187;169188;169189;169190;169191;169192 169185 10 MLEMGLNKEDYWWYR Unmodified 2032.9175 0.91753928 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 46.439 45.024 3 0.037499 21964 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 39.629 37.938 49496000 9027000 5805800 5328100 0 0 0 3416200 0 0 0 0 0 3491200 3086100 0 0 0 0 5831900 7707800 5801800 0 0 0 14636 444 14215 275539;275540;275541;275542;275543;275544;275545;275546;275547 169193 169193 1 MLEQMGIAAK Unmodified 1090.5515 0.55148678 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 25.718 24.882 2 0.00048495 10687 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 100.02 61.225 132230000 0 0 0 0 0 0 0 0 0 0 0 0 46468000 46226000 39538000 0 0 0 0 0 0 0 0 0 14637 148 14216 275548;275549;275550 169194;169195;169196 169195 3 MLEVLDIPR Unmodified 1084.5951 0.59506616 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 3 3 2 1 1 3 3 2 1 2 3 2 1 1 1 43.417 41.703 2;3 0.00019484 20103 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.02 117.43 8087000000 178360000 158900000 160560000 2999700 2798000 0 1024300000 973510000 864970000 6866000 5966300 0 784470000 791800000 751680000 0 0 0 797330000 802940000 769530000 5000000 1625400 3447700 14638 239 14217 275551;275552;275553;275554;275555;275556;275557;275558;275559;275560;275561;275562;275563;275564;275565;275566;275567;275568;275569;275570;275571;275572;275573;275574;275575;275576;275577;275578;275579;275580;275581;275582;275583;275584 169197;169198;169199;169200;169201;169202;169203;169204;169205;169206;169207;169208;169209;169210;169211;169212;169213;169214;169215;169216;169217;169218;169219;169220;169221;169222;169223 169215 25 MLEVLDIPR Oxidation (M) 1100.59 0.58998078 239 P0A6F3 glpK Glycerol kinase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 4 4 2 3 2 3 2 38.649 36.9 2 0.00043434 17016 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 114.28 104.69 449790000 6366500 7429700 0 0 0 0 58705000 61520000 58781000 0 0 0 43099000 35582000 37147000 0 0 0 43806000 54174000 43177000 0 0 0 14639 239 14217 275585;275586;275587;275588;275589;275590;275591;275592;275593;275594;275595;275596;275597;275598;275599;275600;275601;275602;275603;275604;275605;275606;275607;275608;275609;275610;275611;275612 169224;169225;169226;169227;169228;169229;169230;169231;169232;169233;169234;169235;169236;169237;169238;169239;169240;169241;169242;169243;169244;169245;169246;169247;169248;169249 169249 90 22 MLFGLAQEGVAPK Unmodified 1359.7221 0.72205759 590 P0AAE0 cycA D-serine/D-alanine/glycine transporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 41.017 39.24 2 7.6918E-06 13835 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 123.63 121.68 40703000 0 0 0 10835000 9748400 10874000 0 0 0 0 0 0 0 0 0 0 0 0 4204100 3552600 0 1488800 0 0 14640 590 14218 275613;275614;275615;275616;275617;275618;275619;275620 169250;169251;169252;169253;169254;169255 169251 6 MLGADGVTAGSVLLVDSVNNR Unmodified 2087.0681 0.068102925 626 P0AB38 lpoB Penicillin-binding protein activator LpoB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 2 2 2 2 2 2 2 1 1 1 1 2 2 2 2 2 1 1 49.944 48.511 2;3 3.514E-15 19669 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 148.72 144.01 148450000 6016200 7761400 7919800 4654800 5441000 3781300 10421000 7363300 11284000 14698000 7465300 7168800 4340000 2927300 7064000 0 0 0 10280000 10727000 7776500 4552700 4555800 2255400 14641 626 14219 275621;275622;275623;275624;275625;275626;275627;275628;275629;275630;275631;275632;275633;275634;275635;275636;275637;275638;275639;275640;275641;275642;275643;275644;275645;275646;275647;275648;275649;275650;275651;275652;275653;275654;275655 169256;169257;169258;169259;169260 169256 5 MLGADSALEIIAAGK Unmodified 1458.7752 0.77521537 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 49.813 48.505 2 2.0681E-06 23748 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.66 88.576 273650000 101340000 88214000 72383000 1417100 1487900 1850800 0 0 0 0 0 0 2474100 2595200 1881700 0 0 0 0 0 0 0 0 0 14642 1173 14220 275656;275657;275658;275659;275660;275661;275662;275663;275664 169261;169262;169263 169262 3 MLGFGYDWSR Unmodified 1230.5492 0.5491786 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.031 44.528 2 1.41E-07 21714 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 178.94 178.94 1793000000 140200000 162610000 134330000 1299500 1128100 1009300 109490000 124090000 114570000 0 0 0 181460000 166960000 166800000 0 0 0 157360000 172710000 157110000 0 0 1829100 14643 170 14221 275665;275666;275667;275668;275669;275670;275671;275672;275673;275674;275675;275676;275677;275678;275679;275680 169264;169265;169266;169267;169268;169269;169270;169271;169272;169273;169274;169275 169267 12 MLGTTQR Unmodified 805.41162 0.41162248 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.032 12.625 2 0.0061523 2856 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 96.666 61.417 450850000 34547000 0 36155000 4845000 5092800 5932900 30199000 27980000 0 9783000 8489000 7306400 37596000 39948000 42195000 5574300 5728600 5339700 38569000 41444000 40818000 7856100 7041100 8411200 14644 862 14222 275681;275682;275683;275684;275685;275686;275687;275688;275689;275690;275691;275692;275693;275694;275695;275696;275697;275698;275699;275700;275701;275702 169276 169276 1 MLHDMTGADSSVSK Unmodified 1477.6541 0.65411395 1700 P64624 yheO Uncharacterized protein YheO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 14.641 15.299 2;3 4.6102E-15 5030 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 199.7 191.23 314420000 32264000 35945000 29960000 1539100 1680300 1368000 30006000 30412000 29160000 1912600 1312700 2420500 19404000 17505000 14767000 0 0 0 20971000 19760000 20452000 1407200 894500 1282400 14645 1700 14223 275703;275704;275705;275706;275707;275708;275709;275710;275711;275712;275713;275714;275715;275716;275717;275718;275719;275720;275721;275722;275723;275724;275725;275726;275727;275728;275729;275730;275731;275732;275733;275734;275735;275736 169277;169278;169279;169280;169281;169282;169283;169284;169285;169286;169287;169288;169289 169279 12 MLHLTVEQAR Unmodified 1196.6336 0.63357693 315 P0A763 ndk Nucleoside diphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 1 3 2 2 3 2 3 3 1 2 27.364 27.327 2;3 1.713E-07 8193 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 154.56 149.61 7201800000 1213400000 1188100000 1028200000 3640100 3447900 2468700 491310000 454110000 413680000 0 0 0 322930000 203820000 261900000 0 0 0 714710000 503860000 396220000 0 0 0 14646 315 14224 275737;275738;275739;275740;275741;275742;275743;275744;275745;275746;275747;275748;275749;275750;275751;275752;275753;275754;275755;275756;275757;275758;275759;275760;275761;275762;275763;275764;275765;275766;275767;275768;275769;275770;275771 169290;169291;169292;169293;169294;169295;169296;169297;169298;169299;169300;169301;169302;169303;169304;169305;169306;169307;169308;169309;169310;169311;169312;169313;169314;169315;169316;169317;169318;169319 169297 26 MLIDHVEK Unmodified 983.511 0.51100218 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.844 16.66 2 0.010487 5365 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 78.324 71.937 574770000 59371000 65231000 61370000 0 0 0 69506000 75117000 66788000 0 0 0 33947000 40760000 30329000 0 0 0 24618000 24409000 23325000 0 0 0 14647 283 14225 275772;275773;275774;275775;275776;275777;275778;275779;275780;275781;275782;275783 169320;169321;169322;169323;169324;169325 169325 6 MLIIETLPLLR Unmodified 1310.7996 0.79957963 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.889 53.44 2 9.721E-09 26276 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.68 176.11 1160100000 121040000 120680000 113990000 560610 0 725720 94736000 90669000 95652000 0 0 0 67693000 75118000 73455000 0 0 0 114940000 94104000 96736000 0 0 0 14648 1375 14226 275784;275785;275786;275787;275788;275789;275790;275791;275792;275793;275794;275795;275796;275797 169326;169327;169328;169329;169330;169331;169332;169333;169334;169335;169336;169337 169329 12 MLIIETLPLLR Oxidation (M) 1326.7945 0.79449425 1375 P31663 panC Pantothenate synthetase yes yes 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.728 52.303 2 0.0016572 25702 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 68.735 63.794 31817000 4713700 4339200 4842400 0 0 0 0 2549800 2676500 0 0 0 917770 2162200 1718100 0 0 0 2956500 2625500 2315200 0 0 0 14649 1375 14226 275798;275799;275800;275801;275802;275803;275804;275805;275806;275807;275808 169338;169339;169340;169341 169338 540 0 MLIITGPNMGGK Unmodified 1230.6464 0.6464498 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 35.026 33.653 2 0.0013461 15409 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 85.67 82.938 45367000 0 8091900 0 694380 791410 0 0 0 0 0 0 0 9415900 7860100 6764900 0 0 0 0 0 11748000 0 0 0 14650 1230 14227 275809;275810;275811;275812;275813;275814;275815 169342;169343;169344 169343 0 MLILISPAK Unmodified 984.60417 0.60417428 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.776 36.431 2 0.00024392 17569 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 122.74 122.74 207990000 16428000 16081000 20105000 149060 0 0 18038000 17806000 14077000 0 0 0 14293000 12862000 12282000 8060200 5535800 4827700 16741000 15184000 15520000 0 0 0 14651 433 14228 275816;275817;275818;275819;275820;275821;275822;275823;275824;275825;275826;275827;275828;275829;275830;275831 169345;169346;169347;169348;169349;169350;169351;169352;169353;169354;169355;169356;169357;169358;169359 169353 13 MLILVNIEK Unmodified 1071.6362 0.63620269 493 P0A964 cheW Chemotaxis protein CheW yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 41.875 40.246 2 0.00033848 19727 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.5 114.5 226290000 61564000 67215000 65607000 10705000 11167000 10027000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14652 493 14229 275832;275833;275834;275835;275836;275837 169360;169361;169362;169363;169364;169365 169363 6 MLINATQQEELR Unmodified 1444.7344 0.73441319 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.07 26.855 2 9.7303E-32 12311 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 269.99 253.98 227350000 21991000 24631000 18740000 5424500 6017600 5505500 11399000 12145000 9465500 4613500 5340300 5089100 7513300 10300000 8381600 1515700 753940 1335000 16881000 16148000 22598000 3756900 4489700 3319900 14653 1183 14230 275838;275839;275840;275841;275842;275843;275844;275845;275846;275847;275848;275849;275850;275851;275852;275853;275854;275855;275856;275857;275858;275859;275860;275861 169366;169367;169368;169369;169370;169371;169372;169373;169374;169375;169376;169377;169378;169379;169380;169381;169382;169383 169378 18 MLKPEMIEK Oxidation (M) 1133.5825 0.58245256 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 1 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 2 2 2 2 3 1 1 1 2 1 15.324 15.874 2;3 0.039804 4488 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 45.161 25.399 76005000 0 0 0 536770 496490 571520 14242000 17643000 12868000 6873600 7133700 1893900 3961500 2908000 0 0 0 0 0 6295700 0 0 581320 0 14654 501 14231 275862;275863;275864;275865;275866;275867;275868;275869;275870;275871;275872;275873;275874;275875;275876;275877;275878;275879;275880;275881 169384;169385;169386 169384 304 3 MLKPEMIEK Unmodified 1117.5875 0.58753794 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 18.266 18.662 2;3 0.00034592 6885 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 126.55 110.21 4435900000 55835000 57787000 43657000 1623300 2266800 1500600 772430000 747320000 642950000 176680000 154700000 128440000 234370000 256850000 209130000 0 0 0 263880000 270490000 299620000 39678000 38525000 38119000 14655 501 14231 275882;275883;275884;275885;275886;275887;275888;275889;275890;275891;275892;275893;275894;275895;275896;275897;275898;275899;275900;275901;275902;275903;275904;275905;275906;275907;275908;275909;275910;275911;275912;275913;275914;275915;275916;275917;275918;275919;275920;275921 169387;169388;169389;169390;169391;169392;169393;169394;169395;169396;169397;169398;169399;169400;169401;169402;169403;169404;169405;169406;169407;169408;169409;169410 169400 23 MLLDKNGNNLAAQVEFETFNR Unmodified 2423.1903 0.19034333 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1 2 2 2 44.196 42.653 2;3 1.5192E-62 15975 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 339.3 325.58 951740000 0 0 2356900 0 0 0 0 0 0 78614000 97126000 79539000 0 0 0 136520000 145160000 169170000 0 0 0 82182000 75229000 85838000 14656 1616 14232 275922;275923;275924;275925;275926;275927;275928;275929;275930;275931;275932;275933;275934;275935;275936;275937 169411;169412;169413;169414;169415;169416;169417;169418;169419;169420 169412 10 MLLEQGWLVGAR Unmodified 1371.7333 0.73329097 1084 P13016 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.92 46.514 2 1.3206E-06 21715 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 161.92 144.1 144810000 12339000 14536000 12081000 0 0 0 9836600 10265000 11114000 0 0 0 11149000 10920000 11384000 0 0 0 12755000 13528000 14901000 0 0 0 14657 1084 14233 275938;275939;275940;275941;275942;275943;275944;275945;275946;275947;275948;275949 169421;169422;169423;169424;169425;169426 169425 6 MLLNALASLGHK Unmodified 1266.7118 0.71182725 1696 P64606 mlaE Probable phospholipid ABC transporter permease protein MlaE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.387 36.525 3 8.3105E-05 15009 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.29 68.646 76752000 0 2026400 1639000 666560 936340 641470 0 4103900 4198200 3678500 4255100 5486500 5400100 5764800 6325900 0 0 0 7033400 7883400 7174600 3895500 3080100 2562600 14658 1696 14234 275950;275951;275952;275953;275954;275955;275956;275957;275958;275959;275960;275961;275962;275963;275964;275965;275966;275967;275968 169427;169428;169429;169430;169431;169432;169433 169427 7 MLLPDTVGTGGDSHTR Unmodified 1655.7937 0.79371898 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 25.231 24.225 2;3 6.2422E-24 10756 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 214.26 209.16 10327000000 1559900000 1454500000 1302000000 3743600 0 4913900 520710000 488610000 500960000 3148200 3573800 0 528890000 552210000 499120000 1685500 2117200 950100 931800000 987180000 971110000 4102400 5607100 0 14659 1444 14235 275969;275970;275971;275972;275973;275974;275975;275976;275977;275978;275979;275980;275981;275982;275983;275984;275985;275986;275987;275988;275989;275990;275991;275992;275993;275994;275995;275996;275997;275998;275999;276000;276001 169434;169435;169436;169437;169438;169439;169440;169441;169442;169443;169444;169445;169446;169447;169448;169449;169450;169451;169452;169453;169454;169455;169456;169457 169442 24 MLLPDTVGTGGDSHTR Oxidation (M) 1671.7886 0.7886336 1444 P36683 acnB Aconitate hydratase B yes yes 0 1 0 By MS/MS By MS/MS 1 1 23.275 22.925 2;3 0.016944 8853 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 44.543 38.159 9572700 0 0 0 0 0 0 0 0 0 0 0 0 0 3594200 0 0 0 0 5978500 0 0 0 0 0 14660 1444 14235 276002;276003 169458;169459 169458 549 0 MLLQLYHAGILPR Unmodified 1523.8646 0.8646395 1803 P76008 ldcA Murein tetrapeptide carboxypeptidase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.612 39.938 3 5.1905E-05 19386 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 88.155 85.459 116710000 13305000 13682000 13481000 0 0 0 9144600 7527600 8426800 0 0 0 9023800 7243200 7058000 0 0 0 10039000 9659400 8121500 0 0 0 14661 1803 14236 276004;276005;276006;276007;276008;276009;276010;276011;276012;276013;276014;276015 169460;169461;169462;169463 169460 4 MLLTPLAK Unmodified 885.53576 0.53576037 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 32.283 30.954 2 0.014763 14539 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 71.296 60 40096000 10998000 10616000 9813400 3541800 2724000 2403500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14662 151 14237 276016;276017;276018;276019;276020;276021 169464;169465;169466;169467 169466 4 MLMPEDK 2 Oxidation (M) 894.38269 0.38269012 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 2 0 By MS/MS By MS/MS By MS/MS 1 1 1 11.88 11.868 2 0.0099491 2453 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 100.74 100.74 21469000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8387400 5793200 7288800 0 0 0 0 0 0 14663 36 14238 276022;276023;276024 169468;169469;169470 169469 20;21 3 MLMPEDK Oxidation (M) 878.38778 0.3877755 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 5 7 8 15.749 15.853 2 0.0070069 4191 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 99.384 95.992 268410000 3230600 0 0 0 0 0 0 0 0 0 0 0 0 2298300 690260 63831000 83187000 115170000 0 0 0 0 0 0 14664 36 14238 276025;276026;276027;276028;276029;276030;276031;276032;276033;276034;276035;276036;276037;276038;276039;276040;276041;276042;276043;276044;276045;276046;276047 169471;169472;169473;169474;169475;169476;169477;169478;169479;169480;169481;169482;169483;169484;169485;169486;169487 169473 20;21 13 MLMPEDK Unmodified 862.39286 0.39286088 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.104 18.488 2 0.0059588 5367 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 97.473 97.473 4629600000 70117000 89435000 59878000 4020000 3113100 3053400 102540000 93787000 79383000 14323000 14532000 12400000 79913000 83719000 72808000 1049900000 1223100000 1173700000 128160000 117500000 114560000 15323000 13216000 11213000 14665 36 14238 276048;276049;276050;276051;276052;276053;276054;276055;276056;276057;276058;276059;276060;276061;276062;276063;276064;276065;276066;276067;276068;276069;276070;276071;276072 169488;169489;169490;169491;169492;169493;169494;169495;169496;169497;169498;169499;169500;169501;169502;169503;169504;169505;169506;169507;169508;169509;169510;169511;169512 169488 25 MLMPEDKIR Oxidation (M) 1147.573 0.57295051 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 1 By MS/MS By MS/MS By MS/MS 2 2 3 18.186 18.178 3 0.0037827 5799 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 66.692 59.804 59326000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17907000 19752000 21668000 0 0 0 0 0 0 14666 36 14239 276073;276074;276075;276076;276077;276078;276079 169513;169514;169515;169516;169517;169518 169518 20;21 6 MLMPEDKIR Unmodified 1131.578 0.57803589 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 20.025 19.987 2;3 8.3792E-05 6025 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 149.4 124.48 1411600000 0 0 0 0 0 0 0 0 0 0 0 1382100 0 0 0 491720000 459730000 458770000 0 0 0 0 0 0 14667 36 14239 276080;276081;276082;276083;276084;276085;276086 169519;169520;169521;169522;169523;169524 169520 6 MLNELFTTTAI Unmodified 1252.6373 0.6373249 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 55.088 53.64 2 0.0010491 26404 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.005 82.655 207580000 9962500 7794400 8556000 0 0 0 0 19711000 0 0 0 0 25179000 23405000 22719000 0 0 0 32897000 27800000 29554000 0 0 0 14668 1497 14240 276087;276088;276089;276090;276091;276092;276093;276094;276095;276096 169525;169526;169527;169528;169529 169525 5 MLNETPALAPDGQPYR Unmodified 1771.8563 0.85631924 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.052 30.713 2 2.4733E-18 14814 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 230.59 218.73 461240000 64420000 58691000 57534000 0 0 0 38946000 37891000 37299000 0 0 0 25789000 24759000 24994000 0 0 0 28814000 34620000 27479000 0 0 0 14669 507 14241 276097;276098;276099;276100;276101;276102;276103;276104;276105;276106;276107;276108 169530;169531;169532;169533;169534;169535;169536;169537;169538;169539;169540;169541 169530 12 MLNKPVEELNIITCHLGNGGSVSAIR Unmodified 2821.4579 0.45786776 224 P0A6A3 ackA Acetate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 41.548 39.782 3;4 2.7238E-22 19336 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.79 164.38 1762200000 122990000 96730000 95429000 1485700 2065800 1748900 146340000 143760000 110930000 1842000 0 1527200 174790000 175500000 167130000 0 0 0 174570000 166430000 175310000 2344900 1301700 0 14670 224 14242 276109;276110;276111;276112;276113;276114;276115;276116;276117;276118;276119;276120;276121;276122;276123;276124;276125;276126;276127;276128;276129;276130;276131;276132;276133;276134;276135;276136;276137;276138;276139 169542;169543;169544;169545;169546;169547;169548;169549;169550;169551;169552;169553;169554;169555;169556;169557;169558;169559;169560;169561 169554 20 MLNNAMSVVILAAGK Unmodified 1530.8262 0.82620508 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 49.026 47.686 2;3 6.0005E-06 22167 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 127.83 121.54 449880000 33462000 30642000 27089000 0 0 0 30536000 33078000 28197000 0 0 0 46837000 38559000 40561000 0 0 0 45966000 46710000 48238000 0 0 0 14671 720 14243 276140;276141;276142;276143;276144;276145;276146;276147;276148;276149;276150;276151;276152;276153;276154;276155;276156;276157;276158;276159;276160;276161;276162;276163 169562;169563;169564;169565;169566;169567;169568;169569;169570;169571;169572;169573;169574;169575;169576;169577;169578 169577 13 MLNPFTPHICFTLWQELK Unmodified 2274.133 0.13295179 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.24 52.807 3 9.244E-10 25873 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 119.8 115.18 905120000 90962000 112140000 101520000 0 0 0 0 49056000 47403000 0 0 0 62890000 72136000 62778000 0 0 0 98024000 105050000 103150000 0 0 0 14672 170 14244 276164;276165;276166;276167;276168;276169;276170;276171;276172;276173;276174 169579;169580;169581;169582;169583;169584;169585;169586 169580 8 MLNPIVR Unmodified 841.48439 0.4843935 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.597 23.645 2 0.0010227 10389 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.61 74.335 3301200000 203100000 186580000 158330000 21959000 18352000 20306000 254390000 254220000 252120000 10819000 0 0 318300000 295810000 236640000 3858900 2680300 3086100 342680000 344840000 345010000 10623000 9293800 8183200 14673 107 14245 276175;276176;276177;276178;276179;276180;276181;276182;276183;276184;276185;276186;276187;276188;276189;276190;276191;276192;276193;276194;276195;276196;276197;276198;276199;276200 169587;169588;169589;169590;169591;169592;169593;169594;169595;169596;169597;169598;169599;169600;169601;169602;169603;169604;169605;169606 169596 20 MLNQGLQNVSFGQVNSVR Unmodified 1990.0054 0.005443089 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.447 36.603 2 6.0304E-23 17827 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 200.21 192.6 119190000 9474200 9839400 11921000 0 0 0 0 0 0 2967300 2947000 2204800 13155000 16079000 12678000 0 0 0 11936000 0 17778000 2333400 2950300 2925600 14674 1197 14246 276201;276202;276203;276204;276205;276206;276207;276208;276209;276210;276211;276212;276213;276214 169607;169608;169609;169610 169610 3 MLNQLDNLTER Unmodified 1345.666 0.66599927 969 P0AFX4 rsd Regulator of sigma D yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.891 30.299 2 1.3012E-10 14337 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 196.32 180.12 451280000 82055000 73608000 68023000 6463400 6062500 6187300 19233000 16737000 18518000 7947400 6694100 5172100 13422000 11129000 13327000 0 0 0 26144000 24415000 26526000 5811700 5850700 7953200 14675 969 14247 276215;276216;276217;276218;276219;276220;276221;276222;276223;276224;276225;276226;276227;276228;276229;276230;276231;276232;276233;276234;276235 169611;169612;169613;169614;169615;169616;169617;169618;169619;169620;169621;169622;169623;169624 169619 13 MLNTCYR Oxidation (M) 972.41572 0.41572158 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 4 4 4 1 7 6 8 1 2 1 5 4 3 14.533 14.791 2 7.9927E-05 3429 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 129.96 104.96 1798800000 5117800 0 3189000 361550 412790 0 41682000 53968000 51570000 249080000 141080000 135320000 0 0 3750400 226930000 190060000 198310000 5339800 5653600 4748200 173410000 163000000 145800000 14676 458 14248 276236;276237;276238;276239;276240;276241;276242;276243;276244;276245;276246;276247;276248;276249;276250;276251;276252;276253;276254;276255;276256;276257;276258;276259;276260;276261;276262;276263;276264;276265;276266;276267;276268;276269;276270;276271;276272;276273;276274;276275;276276;276277;276278;276279;276280;276281;276282;276283;276284;276285;276286;276287;276288;276289;276290;276291;276292;276293;276294 169625;169626;169627;169628;169629;169630;169631;169632;169633;169634;169635;169636;169637;169638;169639;169640;169641;169642;169643;169644;169645;169646;169647;169648;169649;169650;169651 169638 242 19 MLNTCYR Unmodified 956.42081 0.42080696 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 4 1 1 1 2 1 3 15.672 16.124 2 1.1017E-05 4303 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 184.24 162.7 19455000000 106230000 132010000 123300000 10777000 11792000 12601000 160050000 137660000 136920000 1578600000 1316300000 1388400000 154150000 149240000 168910000 3029500000 2813700000 3157400000 197600000 194670000 190110000 1521300000 1449500000 1314500000 14677 458 14248 276295;276296;276297;276298;276299;276300;276301;276302;276303;276304;276305;276306;276307;276308;276309;276310;276311;276312;276313;276314;276315;276316;276317;276318;276319;276320;276321;276322;276323;276324;276325 169652;169653;169654;169655;169656;169657;169658;169659;169660;169661;169662;169663;169664;169665;169666;169667;169668;169669;169670;169671;169672;169673;169674;169675;169676;169677;169678;169679;169680;169681;169682;169683;169684 169666 29 MLNVWHACPR Unmodified 1282.6063 0.60631632 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 23.268 22.54 2;3 3.4214E-05 10028 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 143.12 139.55 2444200000 227960000 234440000 220780000 0 0 1401300 308250000 309430000 328530000 0 0 0 135220000 126420000 119240000 0 0 0 124860000 146490000 161230000 0 0 0 14678 468 14249 276326;276327;276328;276329;276330;276331;276332;276333;276334;276335;276336;276337;276338;276339;276340;276341;276342;276343;276344;276345;276346;276347;276348;276349;276350 169685;169686;169687;169688;169689;169690;169691;169692;169693;169694;169695;169696;169697;169698;169699;169700;169701;169702 169690 18 MLPDDIGDWYVR Unmodified 1478.6864 0.68640036 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.785 48.373 2 0.00018256 19251 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 88.496 82.255 101660000 0 0 0 2783300 2068200 2189500 0 0 0 6770400 6777300 8812400 0 21702000 0 0 0 0 0 18238000 16464000 6025600 5119600 4715000 14679 1365 14250 276351;276352;276353;276354;276355;276356;276357;276358;276359;276360;276361;276362 169703;169704;169705;169706;169707;169708;169709;169710 169705 7 MLPDNINQWYVR Unmodified 1547.7555 0.75548298 1478 P37637 mdtF Multidrug resistance protein MdtF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 44.463 41.946 2 0.0010273 17154 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 95.502 95.502 9629700 0 0 0 0 0 0 0 0 0 3264700 2831100 3533900 0 0 0 0 0 0 0 0 0 0 0 0 14680 1478 14251 276363;276364;276365 169711;169712;169713 169711 3 MLPHIPQMR Unmodified 1121.5838 0.58378997 1648 P62617 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.046 24.848 3 0.019655 11139 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.129 39 114560000 6075100 4943600 7719200 0 0 0 9036600 12726000 12611000 353810 0 0 9322000 8936700 11416000 0 0 0 12189000 8724300 10507000 0 0 0 14681 1648 14252 276366;276367;276368;276369;276370;276371;276372;276373;276374;276375;276376;276377;276378 169714;169715;169716;169717;169718;169719;169720;169721 169718 7 MLPNNKPTATTVTAPVTVPTASTTEPTVSSTSTSTPISTWR Unmodified 4230.1366 0.13658301 777 P0ADA3 nlpD Murein hydrolase activator NlpD yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 41.202 39.442 4 8.6477E-08 19154 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 77.788 72.604 172430000 24282000 13642000 16583000 0 0 0 12218000 10050000 9873200 1887600 0 0 10415000 13410000 11852000 0 0 0 10761000 17454000 20000000 0 0 0 14682 777 14253 276379;276380;276381;276382;276383;276384;276385;276386;276387;276388;276389;276390;276391 169722;169723;169724 169722 3 MLPTQLVNVK Unmodified 1141.6529 0.65291539 1568 P45464 lpoA Penicillin-binding protein activator LpoA yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 35.126 32.892 2 0.0085446 12701 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 82.241 63.458 11091000 0 0 0 0 0 0 0 0 4291800 2875700 0 3923600 0 0 0 0 0 0 0 0 0 0 0 0 14683 1568 14254 276392;276393;276394 169725 169725 1 MLQEAVDALLDNGR Unmodified 1543.7664 0.7664416 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 3 4 2 5 3 4 2 1 2 12 13 12 2 1 2 4 3 3 48.69 47.818 2;3 1.3474E-29 22222 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 196.88 186.93 25356000000 38656000 39064000 27119000 7066500 6686900 6484800 92508000 100550000 88391000 1187300000 1181100000 1076300000 101490000 46279000 25614000 4336400000 6190500000 6166300000 134240000 54384000 122610000 1511000000 1464000000 1352300000 14684 458 14255 276395;276396;276397;276398;276399;276400;276401;276402;276403;276404;276405;276406;276407;276408;276409;276410;276411;276412;276413;276414;276415;276416;276417;276418;276419;276420;276421;276422;276423;276424;276425;276426;276427;276428;276429;276430;276431;276432;276433;276434;276435;276436;276437;276438;276439;276440;276441;276442;276443;276444;276445;276446;276447;276448;276449;276450;276451;276452;276453;276454;276455;276456;276457;276458;276459;276460;276461;276462;276463;276464;276465;276466;276467;276468;276469;276470;276471;276472;276473;276474;276475;276476;276477;276478;276479;276480;276481;276482 169726;169727;169728;169729;169730;169731;169732;169733;169734;169735;169736;169737;169738;169739;169740;169741;169742;169743;169744;169745;169746;169747;169748;169749;169750;169751;169752;169753;169754;169755;169756;169757;169758;169759;169760;169761;169762;169763;169764;169765;169766;169767;169768;169769;169770;169771;169772;169773;169774;169775;169776;169777;169778;169779;169780;169781;169782;169783;169784;169785;169786;169787;169788;169789;169790;169791;169792;169793;169794;169795;169796;169797;169798;169799;169800;169801;169802;169803;169804;169805;169806;169807;169808;169809;169810;169811;169812;169813;169814;169815;169816;169817 169817 81 MLQEAVDALLDNGR Oxidation (M) 1559.7614 0.76135622 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 7 5 7 7 7 6 4 44.095 42.638 2;3 1.0263E-29 16464 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 202.16 191.79 679910000 0 0 0 0 0 0 0 0 0 74315000 66287000 54831000 0 0 0 114670000 84131000 111130000 0 0 0 68366000 72822000 33354000 14685 458 14255 276483;276484;276485;276486;276487;276488;276489;276490;276491;276492;276493;276494;276495;276496;276497;276498;276499;276500;276501;276502;276503;276504;276505;276506;276507;276508;276509;276510;276511;276512;276513;276514;276515;276516;276517;276518;276519;276520;276521;276522;276523;276524;276525;276526;276527;276528;276529;276530;276531;276532;276533;276534;276535;276536;276537;276538 169818;169819;169820;169821;169822;169823;169824;169825;169826;169827;169828;169829;169830;169831;169832;169833;169834;169835;169836;169837;169838;169839;169840;169841;169842;169843;169844;169845;169846;169847;169848;169849;169850;169851;169852;169853;169854;169855;169856;169857;169858;169859;169860;169861;169862;169863;169864;169865;169866;169867;169868;169869;169870;169871;169872;169873;169874;169875;169876 169876 243 56 MLQEAVDALLDNGRR Oxidation (M) 1715.8625 0.86246725 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 6 7 5 9 10 10 5 5 6 37.894 36.505 2;3 1.4709E-13 12792 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 148.91 134.95 1426100000 0 0 0 0 291150 743440 0 0 0 166370000 142230000 127080000 0 0 0 182230000 231700000 341660000 0 0 0 79345000 79518000 74931000 14686 458 14256 276539;276540;276541;276542;276543;276544;276545;276546;276547;276548;276549;276550;276551;276552;276553;276554;276555;276556;276557;276558;276559;276560;276561;276562;276563;276564;276565;276566;276567;276568;276569;276570;276571;276572;276573;276574;276575;276576;276577;276578;276579;276580;276581;276582;276583;276584;276585;276586;276587;276588;276589;276590;276591;276592;276593;276594;276595;276596;276597;276598;276599;276600;276601;276602;276603 169877;169878;169879;169880;169881;169882;169883;169884;169885;169886;169887;169888;169889;169890;169891;169892;169893;169894;169895;169896;169897;169898;169899;169900;169901;169902;169903;169904;169905;169906;169907;169908;169909;169910;169911;169912;169913;169914;169915;169916;169917;169918;169919;169920;169921;169922;169923;169924;169925;169926;169927;169928;169929;169930;169931;169932;169933;169934;169935 169901 243 58 MLQEAVDALLDNGRR Unmodified 1699.8676 0.86755262 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 3 1 1 1 9 9 10 1 1 1 16 15 17 1 1 1 11 8 8 42.593 41.359 2;3;4 4.9591E-27 16013 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 259.47 226.53 34029000000 24188000 26863000 16962000 11000000 13708000 12075000 17973000 17991000 21010000 1903500000 1956800000 1844900000 18179000 16344000 12756000 7854700000 5968800000 7045800000 28568000 26487000 28146000 2426200000 2384400000 2351300000 14687 458 14256 276604;276605;276606;276607;276608;276609;276610;276611;276612;276613;276614;276615;276616;276617;276618;276619;276620;276621;276622;276623;276624;276625;276626;276627;276628;276629;276630;276631;276632;276633;276634;276635;276636;276637;276638;276639;276640;276641;276642;276643;276644;276645;276646;276647;276648;276649;276650;276651;276652;276653;276654;276655;276656;276657;276658;276659;276660;276661;276662;276663;276664;276665;276666;276667;276668;276669;276670;276671;276672;276673;276674;276675;276676;276677;276678;276679;276680;276681;276682;276683;276684;276685;276686;276687;276688;276689;276690;276691;276692;276693;276694;276695;276696;276697;276698;276699;276700;276701;276702;276703;276704;276705;276706;276707;276708;276709;276710;276711;276712;276713;276714;276715;276716;276717;276718;276719;276720;276721;276722;276723;276724;276725 169936;169937;169938;169939;169940;169941;169942;169943;169944;169945;169946;169947;169948;169949;169950;169951;169952;169953;169954;169955;169956;169957;169958;169959;169960;169961;169962;169963;169964;169965;169966;169967;169968;169969;169970;169971;169972;169973;169974;169975;169976;169977;169978;169979;169980;169981;169982;169983;169984;169985;169986;169987;169988;169989;169990;169991;169992;169993;169994;169995;169996;169997;169998;169999;170000;170001;170002;170003;170004;170005;170006;170007;170008;170009;170010;170011;170012;170013;170014;170015;170016;170017;170018;170019;170020;170021;170022;170023 169988 66 MLQHFIK Unmodified 915.50004 0.50004356 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.696 17.178 2 0.005062 4882 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 101.21 101.21 429620000 20405000 27844000 0 11591000 8409100 9045300 0 23972000 21297000 34123000 36934000 24319000 29419000 0 23539000 10785000 6589400 6069500 31501000 21423000 41152000 14644000 13626000 12934000 14688 564 14257 276726;276727;276728;276729;276730;276731;276732;276733;276734;276735;276736;276737;276738;276739;276740;276741;276742;276743;276744;276745;276746 170024;170025;170026;170027;170028;170029;170030;170031;170032;170033 170032 6 MLQHTPIR Unmodified 994.53822 0.53821998 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 12.276 13.068 2 0.0026816 3772 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.458 93.603 1064400000 191720000 192890000 177220000 0 0 0 139900000 121610000 123500000 0 0 0 21252000 0 0 0 0 0 27702000 33165000 35473000 0 0 0 14689 886 14258 276747;276748;276749;276750;276751;276752;276753;276754;276755;276756 170034;170035;170036;170037;170038;170039 170039 1 MLQHTPIR Oxidation (M) 1010.5331 0.5331346 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 11.381 12.124 2 0.0043286 3254 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.47 80.21 131660000 28000000 27102000 28484000 0 0 0 18160000 19042000 0 0 0 0 0 0 0 0 0 0 0 10871000 0 0 0 0 14690 886 14258 276757;276758;276759;276760;276761;276762 170040 170040 406 1 MLQHTPIRR Unmodified 1150.6393 0.63933101 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.058 11.851 2 0.0013337 2944 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.114 88.011 86189000 16885000 20238000 13076000 0 0 0 8715400 10566000 10988000 0 0 0 0 2023500 1471500 0 0 0 0 2226300 0 0 0 0 14691 886 14259 276763;276764;276765;276766;276767;276768;276769;276770;276771 170041 170041 1 MLQIPQNYIHTR Unmodified 1512.7871 0.78711746 1677 P64488 yeaR Uncharacterized protein YeaR yes yes 0 0 0 By MS/MS By matching 1 1 29.792 28.66 3 0.10578 13295 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 34.75 33.282 34919000 0 15697000 19222000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14692 1677 14260 276772;276773 170042 170042 0 MLQLNVDERPLICGVGLGGYWAER Unmodified 2745.3731 0.37307549 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.24 50.993 2;3 3.2771E-50 24834 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 209.56 206.34 1668000000 178730000 150280000 148540000 0 0 0 140010000 143220000 133880000 0 0 0 129010000 131350000 127360000 0 0 0 129170000 120360000 136060000 0 0 0 14693 421 14261 276774;276775;276776;276777;276778;276779;276780;276781;276782;276783;276784;276785;276786;276787;276788;276789;276790;276791;276792;276793;276794;276795;276796;276797 170043;170044;170045;170046;170047;170048;170049;170050;170051;170052;170053 170046 11 MLQLQEK Unmodified 888.47389 0.47388839 247 P0A6I0 cmk Cytidylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 1 17.568 18.23 2 0.0035704 6724 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.43 84.12 1117300000 67992000 72440000 68310000 0 2057500 1307500 66851000 68311000 70783000 0 2130400 0 97713000 102720000 101130000 0 0 0 134730000 128130000 131780000 0 936350 0 14694 247 14262 276798;276799;276800;276801;276802;276803;276804;276805;276806;276807;276808;276809;276810;276811;276812;276813;276814;276815;276816;276817;276818;276819;276820;276821;276822 170054;170055;170056;170057;170058;170059;170060 170060 7 MLQNPIHLR Unmodified 1120.6175 0.61753293 1396 P32680 yjaG Uncharacterized protein YjaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 2 2 2 2 23.575 22.814 2;3 0.00015821 9888 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 113.71 105.78 577080000 54354000 51422000 41458000 0 0 0 51731000 51437000 57059000 0 0 0 39888000 41193000 36162000 0 0 0 55702000 50565000 46107000 0 0 0 14695 1396 14263 276823;276824;276825;276826;276827;276828;276829;276830;276831;276832;276833;276834;276835;276836;276837;276838;276839;276840;276841;276842;276843;276844;276845;276846;276847 170061;170062;170063;170064;170065;170066;170067;170068;170069;170070;170071;170072;170073;170074;170075;170076;170077;170078;170079;170080 170065 12 MLQQTIEQALLEQGR Unmodified 1756.9142 0.91416847 802 P0ADS2 zapA Cell division protein ZapA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 47.35 45.905 2;3 6.2392E-27 22828 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 231.05 224 1073700000 89908000 95656000 71717000 0 0 783400 82626000 89490000 84474000 0 1710700 1344600 90888000 90430000 92812000 0 0 0 89851000 96326000 92268000 0 0 3455100 14696 802 14264 276848;276849;276850;276851;276852;276853;276854;276855;276856;276857;276858;276859;276860;276861;276862;276863;276864;276865;276866;276867;276868;276869;276870;276871;276872;276873;276874;276875;276876 170081;170082;170083;170084;170085;170086;170087;170088;170089;170090 170081 10 MLQSNEYFSGK Unmodified 1302.5914 0.59143734 1032 P0C037 yaiE UPF0345 protein YaiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.174 23.277 2 1.382E-05 10473 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.03 138.39 1354800000 145900000 126370000 123880000 0 0 655180 125950000 123700000 113610000 0 0 0 98079000 110890000 104080000 0 0 0 92088000 96917000 92667000 0 0 0 14697 1032 14265 276877;276878;276879;276880;276881;276882;276883;276884;276885;276886;276887;276888;276889 170091;170092;170093;170094;170095;170096;170097;170098;170099;170100;170101;170102 170092 12 MLSFEEIGTSTLQSR Unmodified 1697.8294 0.82943578 900 P0AEZ9 moaB Molybdenum cofactor biosynthesis protein B yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.293 43.132 2 6.6509E-09 21458 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.26 142.3 87901000 9570400 9359400 11156000 0 0 0 9394900 9337100 12203000 0 0 0 3547200 3179000 2799000 4481400 2468500 2626300 0 3445800 4333900 0 0 0 14698 900 14266 276890;276891;276892;276893;276894;276895;276896;276897;276898;276899;276900;276901;276902;276903 170103;170104;170105 170103 2 MLSFGGDHFVTLPLLR Unmodified 1801.9549 0.95491107 1626 P60651 speB Agmatinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.365 51.117 2;3 2.7438E-18 24921 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 215.53 209.56 1577500000 104030000 93317000 88860000 0 0 0 132050000 117800000 116000000 0 0 0 110370000 131800000 136510000 0 0 0 184910000 172830000 189070000 0 0 0 14699 1626 14267 276904;276905;276906;276907;276908;276909;276910;276911;276912;276913;276914;276915;276916;276917;276918;276919;276920;276921;276922;276923;276924;276925;276926;276927 170106;170107;170108;170109;170110;170111;170112;170113;170114;170115;170116;170117;170118;170119;170120;170121;170122;170123 170111 18 MLSFGGDHFVTLPLLR Oxidation (M) 1817.9498 0.94982569 1626 P60651 speB Agmatinase yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 50.831 49.53 3 0.0049947 23068 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 54.501 48.338 63060000 0 4787800 3374200 0 0 0 0 12443000 13047000 0 0 0 3775300 5530900 4253200 0 0 0 7552300 3324400 4972400 0 0 0 14700 1626 14267 276928;276929;276930;276931;276932;276933;276934;276935;276936;276937 170124 170124 580 1 MLSGLYGVLRPLDLMQPYR Unmodified 2221.1752 0.17515095 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 53.6 53.04 3 4.3552E-24 19743 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 168.69 159.42 61731000 0 0 6889800 0 0 0 5838800 0 0 0 0 0 0 0 0 13060000 12217000 23726000 0 0 0 0 0 0 14701 433 14268 276938;276939;276940;276941;276942 170125;170126;170127 170126 3 MLSLEQK Unmodified 847.44734 0.44733929 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.306 19.671 2 0.018396 7695 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.401 70.215 350010000 27077000 18551000 20316000 0 2396000 0 28616000 32905000 0 6233800 5454100 5332500 29687000 21982000 22429000 0 0 0 40530000 40154000 33976000 5114800 4652700 4604800 14702 1197 14269 276943;276944;276945;276946;276947;276948;276949;276950;276951;276952;276953;276954;276955;276956;276957;276958;276959;276960 170128;170129;170130;170131;170132 170129 0 MLSSQEVATLITALGCGIGR Unmodified 2076.0707 0.070745462 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 3 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 1 55.454 54.095 2;3 1.4255E-81 25673 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 327.58 313.9 1932700000 143180000 152780000 135280000 2777500 2782600 3136500 130050000 106990000 127110000 30307000 29141000 34987000 134060000 138180000 126090000 7931700 8985300 13357000 212020000 173120000 190630000 8691200 12795000 8364700 14703 883 14270 276961;276962;276963;276964;276965;276966;276967;276968;276969;276970;276971;276972;276973;276974;276975;276976;276977;276978;276979;276980;276981;276982;276983;276984;276985;276986;276987;276988;276989;276990;276991;276992;276993;276994;276995;276996;276997;276998;276999;277000;277001 170133;170134;170135;170136;170137;170138;170139;170140;170141;170142;170143;170144;170145;170146;170147;170148;170149;170150;170151;170152;170153;170154;170155;170156;170157;170158;170159;170160 170158 28 MLSSQEVATLITALGCGIGRDEYNPDKLR Unmodified 3206.6064 0.60638249 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 53.759 53.045 4 7.6498E-23 21459 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 162.91 158.22 184480000 0 0 0 8704700 0 0 0 0 0 35772000 45284000 0 0 0 0 19787000 40867000 34063000 0 0 0 0 0 0 14704 883 14271 277002;277003;277004;277005;277006;277007 170161;170162;170163;170164 170163 4 MLTEANLNSLR Unmodified 1260.6496 0.64962092 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.094 29.747 2 0.14823 14132 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 39.622 29.669 384330000 88515000 89036000 79157000 0 0 0 27753000 26533000 27927000 0 0 0 10203000 8237100 8023700 0 0 0 0 9083100 9864100 0 0 0 14705 1958 14272 277008;277009;277010;277011;277012;277013;277014;277015;277016;277017;277018 170165 170165 0 MLTEDQIK Unmodified 976.48993 0.48993238 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 18.107 18.467 2 0.00091102 6586 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.93 60.47 1193400000 23362000 29245000 22575000 22367000 20890000 20501000 126780000 125500000 108370000 34903000 23966000 31236000 67064000 68467000 61455000 5334100 3568500 3774400 107130000 101890000 102870000 26466000 27111000 28614000 14706 595 14273 277019;277020;277021;277022;277023;277024;277025;277026;277027;277028;277029;277030;277031;277032;277033;277034;277035;277036;277037;277038;277039;277040;277041;277042;277043;277044 170166;170167;170168;170169;170170;170171;170172;170173;170174;170175;170176;170177;170178;170179 170177 14 MLTLLNR Unmodified 859.49496 0.49495818 1552 P41409 rihA Pyrimidine-specific ribonucleoside hydrolase RihA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.854 29.498 2 0.015157 14209 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.415 85.426 72294000 7051800 5753900 3976700 0 0 0 6843100 7341900 5088700 0 0 0 4113800 4255000 2887700 0 0 0 7300300 8581000 9100400 0 0 0 14707 1552 14274 277045;277046;277047;277048;277049;277050;277051;277052;277053;277054;277055;277056 170180 170180 0 MLTLSDGHLHGGVGHE Unmodified 1658.7835 0.78348864 551 P0A9R7 ftsE Cell division ATP-binding protein FtsE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 21.133 21.233 3 0.11045 8827 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 23.697 13.212 61155000 0 5794200 3725000 0 0 0 11245000 9232600 13225000 1439200 0 0 0 8278200 0 0 0 0 8216100 0 0 0 0 0 14708 551 14275 277057;277058;277059;277060;277061;277062;277063;277064 170181;170182 170181 2 MLTVIAEIR Oxidation (M) 1060.5951 0.59506616 808 P0ADU2 ygiN Probable quinol monooxygenase YgiN yes yes 0 1 0 By MS/MS By matching 1 1 33.959 32.256 2 0.00018916 15784 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.06 126.71 9643800 0 0 0 0 0 0 6177600 0 0 0 0 0 0 0 0 0 0 0 0 3466200 0 0 0 0 14709 808 14276 277065;277066 170183 170183 388 1 MLTVIAEIR Unmodified 1044.6002 0.60015154 808 P0ADU2 ygiN Probable quinol monooxygenase YgiN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.565 36.884 2 1.4386E-05 17111 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 160.75 151.16 819470000 51276000 39692000 41259000 0 684030 878280 100190000 97873000 92151000 0 0 0 67105000 81549000 73371000 0 0 0 66140000 56347000 50956000 0 0 0 14710 808 14276 277067;277068;277069;277070;277071;277072;277073;277074;277075;277076;277077;277078;277079;277080 170184;170185;170186;170187;170188;170189;170190;170191;170192;170193;170194;170195;170196;170197;170198 170196 15 MLVEEDPGFFEK Unmodified 1439.6643 0.66426794 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.953 39.203 2 6.3053E-06 19136 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.78 127.56 2323300000 300140000 274350000 251130000 1313700 0 1576900 152110000 131020000 138180000 0 0 864580 158040000 139110000 154550000 0 0 0 216190000 199830000 202750000 1002500 0 1100500 14711 1639 14277 277081;277082;277083;277084;277085;277086;277087;277088;277089;277090;277091;277092;277093;277094;277095;277096;277097 170199;170200;170201;170202;170203;170204;170205;170206;170207;170208;170209;170210 170202 12 MLVFGQDK Unmodified 936.47389 0.47388839 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.082 26.919 2 0.00073819 9989 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 125.25 118.1 185200000 26371000 30223000 25445000 2494600 2205300 1803900 11832000 0 11628000 8751100 7749800 8054500 8587300 8173000 5682000 1808200 1916500 1197400 5846400 8049300 5788200 1589200 0 0 14712 658 14278 277098;277099;277100;277101;277102;277103;277104;277105;277106;277107;277108;277109;277110;277111;277112;277113;277114;277115;277116;277117;277118;277119 170211;170212;170213;170214;170215;170216 170211 6 MLVHLGEDDKK Unmodified 1283.6544 0.65437195 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 14.218 15.045 2 0.05977 5009 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 72.643 57.492 34821000 0 0 0 0 0 0 0 2605600 0 0 0 0 5766100 3566300 4524300 0 0 0 6727000 5122500 6509300 0 0 0 14713 194 14279 277120;277121;277122;277123;277124;277125;277126 170217 170217 0 MLVSQDK Unmodified 819.41604 0.41603916 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.271 12.948 2 0.070812 3713 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 69.176 32.082 158470000 0 10547000 11149000 0 0 2657100 7959800 0 0 3026800 0 2774600 17046000 2765500 13745000 0 0 0 29013000 28194000 23909000 2232100 1781900 1666500 14714 1343 14280 277127;277128;277129;277130;277131;277132;277133;277134;277135;277136;277137;277138;277139;277140;277141 170218 170218 0 MLVSQDKTTTDPMAVVDWINMFALAVNEENAAGGR Unmodified 3793.8114 0.81136624 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.625 38.745 4 0.17032 18149 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 3.0262 0.56606 271450000 20033000 15636000 13425000 9622300 7600900 12233000 15069000 11860000 12355000 24742000 10150000 10089000 20143000 0 15506000 0 0 0 14744000 17569000 10642000 13628000 6789200 9615600 14715 1343 14281 277142;277143;277144;277145;277146;277147;277148;277149;277150;277151;277152;277153;277154;277155;277156;277157;277158;277159;277160;277161 170219 170219 1 MLVSSDK Unmodified 778.38949 0.38949006 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 12.312 12.938 2 0.006056 3702 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 97.068 82.655 122330000 0 0 0 0 0 0 0 61021000 60661000 0 0 0 0 0 0 0 0 0 0 0 0 0 643030 0 14716 1117 14282 277162;277163;277164 170220;170221 170220 2 MLVSSNVTMQFGSKPLFENISVK Unmodified 2555.3128 0.31276665 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 47.702 46.281 3 0.049556 21809 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 37.228 31.434 121850000 0 10304000 7262300 0 0 0 15137000 11834000 10702000 0 0 0 10987000 10714000 9840700 0 0 0 11378000 9024800 14667000 0 0 0 14717 558 14283 277165;277166;277167;277168;277169;277170;277171;277172;277173;277174;277175 170222 170222 1 MLYGLIYK Unmodified 999.54633 0.54632505 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 38.843 37.067 2 0.10616 17309 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 47.916 39.322 85589000 0 0 0 0 0 0 7390900 7925000 7845800 0 0 0 9694300 8015600 6478100 0 0 0 13184000 12306000 11280000 0 1469200 0 14718 1494 14284 277176;277177;277178;277179;277180;277181;277182;277183;277184;277185 170223;170224 170223 2 MLYVIYAQDK Unmodified 1242.6318 0.63184559 630 P0AB55 yciI Protein YciI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 35.474 34.038 2 0.0012791 16701 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.676 81.136 624870000 83995000 66790000 65894000 0 0 0 60806000 58431000 57711000 0 0 0 37514000 36711000 34272000 0 0 1050800 44445000 40375000 36873000 0 0 0 14719 630 14285 277186;277187;277188;277189;277190;277191;277192;277193;277194;277195;277196;277197;277198 170225;170226;170227;170228;170229;170230;170231;170232;170233;170234 170226 3 MMALAAR Unmodified 762.38805 0.38805027 789 P0ADI4 entB Enterobactin synthase component B;Isochorismatase;Aryl carrier protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.111 18.692 2 0.00078206 6941 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 145 137.59 270610000 0 0 0 982840 703690 762090 16282000 12572000 15098000 0 0 0 23921000 23056000 22353000 0 0 0 49251000 53848000 51022000 0 760690 0 14720 789 14286 277199;277200;277201;277202;277203;277204;277205;277206;277207;277208;277209;277210;277211 170235;170236;170237;170238;170239;170240;170241;170242 170239 8 MMDLISK Unmodified 836.4136 0.41359632 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 1 1 1 1 2 2 2 1 1 1 1 1 1 26.638 25.574 1;2 0.0055591 9372 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 99.139 94.315 2287100000 0 61547000 47090000 9526800 9035600 9226600 231200000 234710000 247260000 93566000 86730000 81247000 143590000 129660000 137590000 104620000 71349000 75056000 144760000 152550000 144360000 23497000 25990000 22952000 14721 1745 14287 277212;277213;277214;277215;277216;277217;277218;277219;277220;277221;277222;277223;277224;277225;277226;277227;277228;277229;277230;277231;277232;277233;277234;277235;277236;277237;277238;277239 170243;170244;170245;170246;170247;170248;170249;170250;170251;170252;170253;170254;170255;170256;170257;170258;170259;170260;170261;170262;170263 170248 21 MMDVIQEIER Unmodified 1262.5999 0.59989354 523 P0A9H9 cheZ Protein phosphatase CheZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 40.868 39.213 2 4.5836E-07 19177 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.51 171.22 185840000 58802000 47779000 58430000 7049400 6270700 5411700 0 0 2099600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14722 523 14288 277240;277241;277242;277243;277244;277245;277246 170264;170265;170266;170267;170268 170266 5 MMETVFFALDDAEQLFAHHQPTPVTSVDLLGQGR Unmodified 3799.8338 0.83381624 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 55.206 53.741 4 1.1234E-43 26601 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 206.16 206.15 519400000 164000000 171460000 151450000 0 0 0 0 15045000 0 0 0 0 0 0 0 0 0 0 0 0 17454000 0 0 0 14723 1107 14289 277247;277248;277249;277250;277251 170269 170269 1 MMGAEGLK Unmodified 835.3932 0.39319523 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 16.858 17.573 1;2 0.0036006 6278 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 90.777 83.209 921000000 62641000 59105000 53220000 0 0 0 98565000 94789000 86482000 802110 0 0 60328000 57349000 58086000 0 0 0 101580000 97743000 90308000 0 0 0 14724 1409 14290 277252;277253;277254;277255;277256;277257;277258;277259;277260;277261;277262;277263;277264;277265;277266;277267;277268;277269;277270;277271;277272;277273;277274;277275;277276 170270;170271;170272;170273;170274;170275;170276;170277;170278;170279;170280;170281;170282 170274 12 MMGAEGLKK Unmodified 963.48816 0.48815825 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.376 13.027 2 0.01608 3057 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 73.248 68.932 321140000 26408000 24032000 26948000 4465600 0 0 27451000 26290000 29970000 4450800 4263200 3831400 0 26199000 31959000 0 0 0 34542000 36432000 0 5969600 7930500 0 14725 1409 14291 277277;277278;277279;277280;277281;277282;277283;277284;277285;277286;277287;277288;277289;277290;277291;277292;277293 170283;170284;170285 170285 3 MMGGLWSK Unmodified 908.42483 0.42482971 932 P0AFE8 nuoM NADH-quinone oxidoreductase subunit M yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.313 28.672 2 0.12595 10669 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 43.808 41.12 176460000 0 0 4408700 1397400 1135500 1567100 14345000 16868000 15574000 4410500 4994600 4240000 12878000 14216000 12298000 0 0 0 17133000 19927000 18358000 4662500 3664600 4381700 14726 932 14292 277294;277295;277296;277297;277298;277299;277300;277301;277302;277303;277304;277305;277306;277307;277308;277309;277310;277311;277312 170286 170286 1 MMIPMVNEVVR Unmodified 1317.6607 0.66071966 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.015 43.776 2 8.1656E-05 21161 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.35 119.78 108810000 37347000 33205000 38261000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14727 1173 14293 277313;277314;277315 170287;170288;170289 170289 3 MMLEDARPSLLITTDDQLPR Unmodified 2314.1661 0.16610241 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 45.447 43.999 3 4.3519E-18 20679 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 158.74 154.48 132170000 5647700 7591500 0 0 0 0 6157100 4844500 6233300 0 0 0 16051000 15335000 10976000 0 0 0 17447000 22484000 19403000 0 0 0 14728 1070 14294 277316;277317;277318;277319;277320;277321;277322;277323;277324;277325;277326 170290;170291 170291 2 MMLEHYQQTK Unmodified 1307.6002 0.60022789 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.473 15.103 3 0.00019815 4907 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.26 102.56 589970000 154950000 195910000 171220000 2100200 0 2291300 42129000 4410200 3647200 750200 1161500 743390 0 0 0 0 0 0 6009000 4656200 0 0 0 0 14729 1486 14295 277327;277328;277329;277330;277331;277332;277333;277334;277335;277336;277337;277338;277339 170292;170293;170294 170294 3 MMLFDEPTSALDPELR Unmodified 1863.8747 0.87467142 1053 P10346 glnQ Glutamine transport ATP-binding protein GlnQ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 52.422 51.128 2 6.5668E-14 23995 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 174.84 169.52 129320000 4407800 26596000 0 5744800 7073400 5658600 7139200 8126000 0 0 3278400 4816800 16343000 19383000 17970000 0 0 0 0 0 0 0 0 2784100 14730 1053 14296 277340;277341;277342;277343;277344;277345;277346;277347;277348;277349;277350;277351;277352 170295;170296;170297;170298;170299;170300;170301 170300 7 MMLTDSVSSVQIEDAASQSAAYVVMPMR Oxidation (M) 3032.3963 0.39631464 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 2 2 2 53.494 52.013 3 1.2271E-41 21294 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 220.23 220.23 142010000 0 0 0 0 0 0 0 0 0 60223000 34080000 47705000 0 0 0 0 0 0 0 0 0 0 0 0 14731 497 14297 277353;277354;277355;277356;277357;277358 170302;170303;170304;170305;170306;170307 170303 297;298;299;300 6 MMLTDSVSSVQIEDAASQSAAYVVMPMR Unmodified 3016.4014 0.40140001 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 3 3 3 54.482 52.948 2;3;4 7.6489E-154 21304 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 393.05 382.71 1505000000 0 2738700 0 0 0 0 0 0 0 488180000 507660000 506430000 0 0 0 0 0 0 0 0 0 0 0 0 14732 497 14297 277359;277360;277361;277362;277363;277364;277365;277366;277367;277368 170308;170309;170310;170311;170312;170313;170314;170315;170316 170315 9 MMLTDSVSSVQIEDAASQSAAYVVMPMRL Oxidation (M) 3145.4804 0.48037862 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 1 1 By MS/MS By matching By MS/MS 1 1 1 54.929 53.381 3 1.7026E-16 21728 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 150.03 149.42 48161000 0 0 0 0 0 0 0 0 0 16308000 18987000 12865000 0 0 0 0 0 0 0 0 0 0 0 0 14733 497 14298 277369;277370;277371 170317;170318 170317 297;298;299;300 2 MMLTDSVSSVQIEDAASQSAAYVVMPMRL Unmodified 3129.4855 0.48546399 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By matching By MS/MS By MS/MS 3 3 3 55.172 53.624 2;3;4 4.5841E-54 21650 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 336.31 318.07 700160000 0 0 0 0 0 0 0 0 0 193860000 241560000 264740000 0 0 0 0 0 0 0 0 0 0 0 0 14734 497 14298 277372;277373;277374;277375;277376;277377;277378;277379;277380 170319;170320;170321;170322;170323 170321 3 MMMDSSNQQSNAK Unmodified 1470.5901 0.59013349 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 12.175 13.068 2 9.9711E-24 2799 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 229.17 224.26 94425000 13726000 11596000 16281000 17640000 18519000 16664000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14735 151 14299 277381;277382;277383;277384;277385;277386 170324;170325;170326;170327;170328 170324 5 MMNDSFCR Unmodified 1059.3936 0.39360593 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.955 18.515 2 3.1386E-06 6580 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 180.7 180.7 235700000 17143000 14816000 12796000 0 393720 0 20911000 20829000 20263000 0 0 0 19236000 16903000 16102000 0 0 0 27019000 21723000 26053000 779120 735880 0 14736 1586 14300 277387;277388;277389;277390;277391;277392;277393;277394;277395;277396;277397;277398;277399;277400;277401 170329;170330;170331;170332;170333;170334;170335;170336;170337;170338;170339;170340 170338 12 MMPGYVSVLESNLTAQDK Unmodified 1981.9489 0.94889899 846 P0AEC3 arcB Aerobic respiration control sensor protein ArcB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 2 2 2 2 2 2 2 49.232 47.88 2;3 1.6567E-13 23340 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 178.15 172.87 251050000 25786000 28107000 24469000 566050 0 455830 28523000 14205000 25378000 0 0 0 16421000 14609000 16900000 0 0 0 17895000 18723000 19009000 0 0 0 14737 846 14301 277402;277403;277404;277405;277406;277407;277408;277409;277410;277411;277412;277413;277414;277415;277416;277417;277418;277419;277420;277421;277422;277423;277424;277425;277426 170341;170342;170343;170344;170345;170346;170347;170348;170349;170350;170351;170352 170343 12 MMQFMTMDGTFGNPASR Unmodified 1920.7991 0.79908041 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.094 46.699 2 5.6874E-25 23065 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 223.22 223.22 300200000 35127000 40505000 35692000 2336900 2640500 2769900 20118000 22664000 20292000 0 0 0 16269000 21952000 20933000 0 0 0 20750000 17680000 18391000 0 2083900 0 14738 228 14302 277427;277428;277429;277430;277431;277432;277433;277434;277435;277436;277437;277438;277439;277440;277441;277442 170353;170354;170355;170356;170357;170358;170359;170360;170361;170362;170363;170364;170365 170355 13 MMRPGEPPTR 2 Oxidation (M) 1202.5536 0.55361205 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 2 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 10.78 11.116 2;3 0.0091721 2130 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 71.379 60.669 98722000 0 0 0 0 0 0 4093100 0 5328700 11621000 8408500 6414400 0 0 0 14018000 7458700 7489600 0 1180100 1161600 10097000 8218900 13233000 14739 463 14303 277443;277444;277445;277446;277447;277448;277449;277450;277451;277452;277453;277454;277455;277456 170366;170367;170368;170369;170370;170371 170367 269;270 6 MMRPGEPPTR Oxidation (M) 1186.5587 0.55869743 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 2 3 3 2 3 3 4 1 1 1 4 4 6 1 2 2 3 5 5 11.916 12.325 2;3 0.00035668 2965 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 88.948 80.728 6148600000 60963000 49932000 31837000 0 0 0 61251000 59679000 46267000 577860000 353570000 128910000 18324000 21603000 20868000 1418300000 1000700000 1380800000 29824000 34884000 27240000 141240000 356710000 327790000 14740 463 14303 277457;277458;277459;277460;277461;277462;277463;277464;277465;277466;277467;277468;277469;277470;277471;277472;277473;277474;277475;277476;277477;277478;277479;277480;277481;277482;277483;277484;277485;277486;277487;277488;277489;277490;277491;277492;277493;277494;277495;277496;277497;277498;277499;277500;277501;277502;277503;277504;277505;277506;277507;277508;277509;277510;277511;277512;277513;277514;277515;277516;277517 170372;170373;170374;170375;170376;170377;170378;170379;170380;170381;170382;170383;170384;170385;170386;170387;170388;170389;170390;170391;170392;170393;170394;170395;170396;170397;170398 170377 269;270 27 MMRPGEPPTR Unmodified 1170.5638 0.5637828 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 3 3 2 2 2 3 4 6 2 2 2 4 3 3 12.694 13.202 1;2;3 1.4658E-05 3006 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 144.77 140.85 43364000000 360060000 343640000 331530000 33306000 30029000 28290000 226420000 222390000 241470000 1789900000 2128200000 2355600000 360450000 339560000 336110000 10165000000 8164900000 8386400000 314550000 332380000 350640000 1433100000 2475800000 2614900000 14741 463 14303 277518;277519;277520;277521;277522;277523;277524;277525;277526;277527;277528;277529;277530;277531;277532;277533;277534;277535;277536;277537;277538;277539;277540;277541;277542;277543;277544;277545;277546;277547;277548;277549;277550;277551;277552;277553;277554;277555;277556;277557;277558;277559;277560;277561;277562;277563;277564;277565;277566;277567;277568;277569;277570;277571;277572;277573;277574;277575;277576;277577;277578;277579 170399;170400;170401;170402;170403;170404;170405;170406;170407;170408;170409;170410;170411;170412;170413;170414;170415;170416;170417;170418;170419;170420;170421;170422;170423;170424;170425;170426;170427;170428;170429 170405 30 MMSALNLPLSGIQSTLGR Unmodified 1887.991 0.99103858 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 53.522 51.947 2 8.075E-07 25677 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 95.264 95.055 44011000 0 0 0 0 0 0 11177000 12016000 17250000 0 3567400 0 0 0 0 0 0 0 0 0 0 0 0 0 14742 722 14304 277580;277581;277582;277583 170430;170431 170431 0 MMSPMSAEATVVR Unmodified 1408.6513 0.65127718 536 P0A9M0 lon Lon protease yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 31.744 30.565 2;3 1.1077E-05 12078 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 141.88 123.1 325290000 18711000 20266000 14820000 0 2177500 1744500 13629000 0 11212000 18100000 15295000 14275000 12578000 11937000 10176000 54079000 24204000 31014000 0 14114000 14829000 8433700 7493300 6203400 14743 536 14305 277584;277585;277586;277587;277588;277589;277590;277591;277592;277593;277594;277595;277596;277597;277598;277599;277600;277601;277602;277603;277604;277605;277606;277607 170432;170433;170434;170435;170436;170437;170438;170439;170440;170441 170436 9 MMSQAMR Unmodified 853.36085 0.36084924 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.436 13.066 2 0.00013484 3079 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 170.96 163.54 1791700000 89298000 92379000 83205000 14592000 12738000 15793000 102720000 105720000 109410000 134630000 148850000 131290000 80224000 82284000 86093000 21782000 20672000 25491000 90398000 92725000 90568000 52075000 52877000 55864000 14744 343 14306 277608;277609;277610;277611;277612;277613;277614;277615;277616;277617;277618;277619;277620;277621;277622;277623;277624;277625;277626;277627;277628;277629;277630;277631;277632 170442;170443;170444;170445;170446;170447;170448;170449;170450;170451;170452;170453;170454;170455;170456;170457;170458;170459;170460;170461;170462;170463;170464 170442 22 MMSQAMR Oxidation (M) 869.35576 0.35576386 343 P0A7G6 recA Protein RecA yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 10.85 11.279 2 0.074455 2346 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 61.494 61.494 57587000 0 0 0 0 0 0 23463000 16843000 0 9729600 7551500 0 0 0 0 0 0 0 0 0 0 0 0 0 14745 343 14306 277633;277634;277635;277636 170465;170466;170467 170466 3 MMSQAMRKLAGNLK 2 Oxidation (M) 1609.8102 0.81023744 343 P0A7G6 recA Protein RecA yes yes 0 2 2 By matching By matching By matching By MS/MS 1 1 1 1 14.932 15.786 2 0.0537 5312 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 40.715 29.182 15426000 0 0 0 0 0 0 0 0 2548800 0 0 0 2228400 0 0 0 0 0 0 4720900 5928000 0 0 0 14746 343 14307 277637;277638;277639;277640 170468 170468 1 MMTMLDPANAER Unmodified 1378.6043 0.60432699 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.054 31.614 2 3.432E-08 15248 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 162.36 159.38 1116200000 111070000 121550000 107910000 0 0 0 121780000 116880000 127000000 0 0 0 65941000 67330000 66388000 0 0 0 64633000 73889000 71846000 0 0 0 14747 468 14308 277641;277642;277643;277644;277645;277646;277647;277648;277649;277650;277651;277652 170469;170470;170471;170472;170473;170474;170475;170476;170477;170478;170479;170480 170470 12 MMTSYVIGQAMK Unmodified 1358.6396 0.63964986 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.73 33.164 2 7.3424E-12 13026 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 191.85 183.81 249570000 6470900 4640700 6661300 4534900 4353600 4159400 11916000 9750600 12732000 15272000 15713000 16367000 11498000 12362000 12271000 4398800 0 2434700 18721000 18295000 18330000 12116000 12628000 13942000 14748 844 14309 277653;277654;277655;277656;277657;277658;277659;277660;277661;277662;277663;277664;277665;277666;277667;277668;277669;277670;277671;277672;277673;277674;277675 170481;170482;170483;170484;170485;170486;170487 170481 7 MMYADPQALHALLDK Unmodified 1715.8375 0.83749805 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.911 42.396 3 3.721E-06 21003 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.529 80.758 416760000 39755000 35347000 29044000 0 0 0 37335000 42635000 37463000 0 0 0 23967000 22063000 28482000 0 0 0 37588000 42462000 40622000 0 0 0 14749 1332 14310 277676;277677;277678;277679;277680;277681;277682;277683;277684;277685;277686;277687 170488;170489;170490;170491;170492;170493;170494 170489 7 MNAIIIDDHPLAIAAIR Unmodified 1846.0135 0.01348858 759 P0ACZ4 evgA Positive transcription regulator EvgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 45.333 43.877 3 2.4862E-07 21840 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 109.07 108.52 687920000 58396000 47055000 44566000 0 0 0 74920000 77321000 66835000 0 0 0 39029000 38668000 37159000 0 0 0 72921000 67714000 59770000 3569600 0 0 14750 759 14311 277688;277689;277690;277691;277692;277693;277694;277695;277696;277697;277698;277699;277700 170495;170496;170497;170498;170499;170500;170501;170502;170503;170504;170505;170506 170495 12 MNAPDIK Unmodified 787.38982 0.38982441 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.863 15.63 2 0.0079027 5340 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.369 82.982 328680000 50135000 2441800 59150000 1038500 0 0 67309000 61617000 56035000 0 0 0 11988000 8985100 0 0 0 0 0 9975100 0 0 0 0 14751 1831 14312 277701;277702;277703;277704;277705;277706;277707;277708;277709;277710 170507;170508;170509;170510 170507 4 MNDIAHNLAQVR Unmodified 1380.6932 0.69321707 1709 P67080 yggS UPF0001 protein YggS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.675 22.146 3 0.16178 8963 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 21.759 20.569 246420000 15672000 13218000 9201000 0 0 0 18768000 20728000 21284000 0 0 0 18567000 18712000 18696000 0 0 0 31235000 30290000 30047000 0 0 0 14752 1709 14313 277711;277712;277713;277714;277715;277716;277717;277718;277719;277720;277721;277722 170511 170511 0 MNDSEFHR Unmodified 1034.424 0.42397808 1312 P27838 cyaY Protein CyaY yes yes 0 0 0 By MS/MS By MS/MS 1 1 11.64 12.624 2 0.00016401 3203 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 126.28 117.41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14753 1312 14314 277723;277724 170512;170513 170513 2 MNDTPPAER Unmodified 1029.4549 0.45494386 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.782 12.501 2 2.5208E-12 2722 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 178.94 171.27 558620000 0 0 4770000 3697400 2679700 2735300 28102000 30857000 27698000 43540000 41281000 41728000 38178000 35187000 31956000 0 0 0 49808000 56296000 58617000 31198000 30287000 0 14754 1718 14315 277725;277726;277727;277728;277729;277730;277731;277732;277733;277734;277735;277736;277737;277738;277739;277740;277741;277742;277743 170514;170515;170516;170517;170518;170519;170520;170521 170517 8 MNDTSFENCIK Unmodified 1357.5642 0.56423631 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.45 23.519 2 1.062E-19 10480 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 233.46 228.26 224960000 0 0 0 0 0 0 27446000 29848000 26033000 18091000 17325000 18232000 13192000 15162000 13736000 3284600 2206900 2053900 8128000 8133600 9599500 4301400 4514400 3671300 14755 500 14316 277744;277745;277746;277747;277748;277749;277750;277751;277752;277753;277754;277755;277756;277757;277758;277759;277760;277761 170522;170523;170524;170525;170526;170527;170528;170529;170530;170531;170532;170533;170534;170535;170536 170529 15 MNELDGIK Unmodified 918.44807 0.44806757 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 19.994 20.441 2 0.0012043 7925 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.81 78.337 1323700000 230710000 219240000 234420000 235380 0 0 174040000 163530000 191960000 0 0 0 33032000 29753000 0 0 0 0 0 46815000 0 0 0 0 14756 401 14317 277762;277763;277764;277765;277766;277767;277768;277769;277770;277771 170537;170538 170537 2 MNELMALHTGQSLEQIER Unmodified 2099.014 0.013958865 243 P0A6G7 clpP ATP-dependent Clp protease proteolytic subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 36.109 34.518 2;3 1.6032E-55 16896 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 329.65 320.46 7485500000 649160000 721050000 566940000 1889000 1740300 1775800 590430000 644210000 623410000 2698700 2428500 2008900 729670000 604140000 611480000 2469500 0 1624000 519490000 618950000 585880000 2658200 1376600 0 14757 243 14318 277772;277773;277774;277775;277776;277777;277778;277779;277780;277781;277782;277783;277784;277785;277786;277787;277788;277789;277790;277791;277792;277793;277794;277795;277796;277797;277798;277799;277800;277801;277802;277803;277804;277805 170539;170540;170541;170542;170543;170544;170545;170546;170547;170548;170549;170550;170551;170552;170553;170554;170555;170556;170557;170558;170559;170560;170561;170562;170563 170542 25 MNELMALHTGQSLEQIER Oxidation (M) 2115.0089 0.0088734869 243 P0A6G7 clpP ATP-dependent Clp protease proteolytic subunit yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 33.625 32.256 3 7.4286E-14 15455 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 142.3 139.55 108570000 19353000 16753000 22764000 0 0 0 0 9003400 0 0 0 0 0 6211900 6718500 0 0 0 4447100 7189300 16129000 0 0 0 14758 243 14318 277806;277807;277808;277809;277810;277811;277812;277813;277814 170564;170565;170566;170567 170565 104 4 MNEQSQAK Unmodified 934.41783 0.41783007 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.7327 5.6208 2 0.00029541 950 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 147.34 122.71 379640000 0 0 0 0 0 0 53586000 52243000 65465000 0 0 0 31846000 32441000 27878000 0 0 0 36905000 37092000 42185000 0 0 0 14759 902 14319 277815;277816;277817;277818;277819;277820;277821;277822;277823 170568;170569;170570;170571;170572;170573 170572 6 MNEQYSALR Unmodified 1110.5128 0.51279309 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.552 18.05 2 9.3542E-16 6264 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 226.68 207.04 1190800000 144950000 170450000 135800000 0 0 0 119980000 107170000 115740000 808480 1459600 649190 58953000 63485000 54807000 0 0 0 77565000 73286000 64964000 0 770070 0 14760 43 14320 277824;277825;277826;277827;277828;277829;277830;277831;277832;277833;277834;277835;277836;277837;277838;277839 170574;170575;170576;170577;170578;170579;170580;170581;170582;170583;170584 170582 11 MNFLPVK Unmodified 847.4626 0.46259542 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.418 31.068 2 0.0071055 12077 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 92.692 77.471 895790000 0 12013000 6696700 0 3321200 3344600 0 0 0 48530000 55527000 57926000 68275000 67924000 68308000 13104000 11821000 14426000 113170000 109830000 111580000 44375000 45280000 40336000 14761 1718 14321 277840;277841;277842;277843;277844;277845;277846;277847;277848;277849;277850;277851;277852;277853;277854;277855;277856;277857;277858;277859;277860 170585;170586;170587;170588;170589;170590;170591;170592;170593;170594;170595;170596;170597;170598;170599;170600;170601;170602;170603;170604 170589 20 MNFSHGSPEDHK Oxidation (M) 1400.5779 0.57791254 1184 P21599 pykA Pyruvate kinase II yes yes 0 1 0 By MS/MS By matching 1 1 10.017 10.746 3 0.0098234 2530 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 56.087 56.087 23310000 0 0 0 0 0 0 23103000 206500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14762 1184 14322 277861;277862 170605 170605 498 1 MNFSHGSPEDHK Unmodified 1384.583 0.58299792 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 11.236 11.938 2;3 8.956E-17 2848 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 208.17 208.17 2514300000 167480000 131330000 129520000 5143500 3894800 2195900 267310000 267770000 288780000 12756000 0 6203000 241260000 230930000 241660000 3689600 3009900 4113900 166600000 169350000 160230000 2526600 3713900 4838600 14763 1184 14322 277863;277864;277865;277866;277867;277868;277869;277870;277871;277872;277873;277874;277875;277876;277877;277878;277879;277880;277881;277882;277883;277884;277885;277886;277887;277888;277889;277890;277891;277892;277893;277894;277895;277896;277897;277898;277899;277900 170606;170607;170608;170609;170610;170611;170612;170613;170614;170615;170616;170617;170618;170619;170620;170621;170622;170623;170624;170625;170626;170627;170628;170629 170627 24 MNHDIPLK Unmodified 966.49569 0.49568646 752 P0ACV8 ymjA Uncharacterized protein YmjA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.579 14.445 2 0.13786 4508 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 50.805 28.182 98822000 12966000 11885000 11831000 0 0 0 8745700 5285200 7992500 0 0 0 6382900 7111600 6148600 0 0 0 6353600 8536100 5583600 0 0 0 14764 752 14323 277901;277902;277903;277904;277905;277906;277907;277908;277909;277910;277911;277912 170630 170630 0 MNIAGASFANIEGVK Unmodified 1520.7657 0.76571331 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.595 38.984 2 1.0824E-08 15506 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 147.26 129.82 1624800000 115360000 96778000 104540000 5066600 4690000 5728100 167110000 178320000 154490000 20496000 18386000 20650000 115590000 108170000 101100000 5869800 4090800 4151000 119940000 132330000 114570000 10073000 8731000 8604300 14765 1119 14324 277913;277914;277915;277916;277917;277918;277919;277920;277921;277922;277923;277924;277925;277926;277927;277928;277929;277930;277931;277932;277933;277934;277935;277936 170631;170632;170633;170634;170635;170636;170637;170638;170639;170640;170641;170642;170643;170644;170645;170646 170633 9 MNIDTDTQWATWEGVLNYYK Unmodified 2447.1104 0.11036167 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 54.94 53.48 2;3 3.2762E-68 26289 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 387.87 386.17 5736000000 367050000 335050000 411150000 2640800 0 1646000 630660000 564250000 522450000 0 0 0 496410000 467250000 494750000 0 0 0 510560000 478600000 453490000 0 0 0 14766 634 14325 277937;277938;277939;277940;277941;277942;277943;277944;277945;277946;277947;277948;277949;277950;277951;277952;277953;277954;277955;277956;277957;277958;277959;277960;277961;277962 170647;170648;170649;170650;170651;170652;170653;170654;170655;170656;170657;170658;170659;170660;170661;170662;170663;170664;170665;170666;170667;170668;170669;170670 170655 24 MNIEELKK Unmodified 1003.5372 0.53721693 710 P0AC92 gnsA Protein GnsA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.561 16.368 2 0.0029372 5258 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 101.28 86.502 338350000 25376000 25201000 17793000 0 0 0 26837000 28928000 30705000 0 0 0 32860000 24467000 25694000 0 0 0 34485000 34992000 31008000 0 0 0 14767 710 14326 277963;277964;277965;277966;277967;277968;277969;277970;277971;277972;277973;277974 170671;170672;170673;170674;170675 170674 5 MNIFDHYR Unmodified 1094.4967 0.4967491 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 25.141 24.098 2;3 4.827E-09 10538 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 203.41 184.63 1235500000 235440000 229540000 235390000 2053400 0 0 117960000 114660000 125080000 0 1853500 1921800 26589000 23696000 25897000 0 0 0 32374000 28935000 34067000 0 0 0 14768 757 14327 277975;277976;277977;277978;277979;277980;277981;277982;277983;277984;277985;277986;277987;277988;277989;277990;277991;277992;277993;277994;277995;277996;277997;277998;277999;278000;278001 170676;170677;170678;170679;170680;170681;170682;170683;170684;170685;170686;170687;170688;170689;170690;170691;170692;170693;170694 170689 19 MNIGQILETHLGMAAK 2 Oxidation (M) 1757.8804 0.8804255 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 3 3 5 2 1 2 35.267 34.24 3 0.00016806 13394 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 67.326 62.324 164340000 0 0 0 0 0 0 0 0 0 0 12765000 11678000 0 0 0 25970000 20091000 39878000 0 0 0 24120000 9799500 20041000 14769 463 14328 278002;278003;278004;278005;278006;278007;278008;278009;278010;278011;278012;278013;278014;278015;278016;278017;278018;278019;278020;278021;278022 170695;170696;170697;170698;170699;170700;170701;170702;170703;170704 170703 271;272 10 MNIGQILETHLGMAAK Oxidation (M) 1741.8855 0.88551087 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 6 2 4 3 2 5 4 6 13 13 12 4 4 4 16 22 15 4 6 5 13 13 14 42.356 40.915 2;3 2.0015E-19 14053 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 202.05 187.15 8809800000 5937900 26577000 8695300 5975600 3529500 3608100 31533000 28019000 25715000 537530000 514980000 460490000 20371000 15557000 19485000 1731000000 1468600000 2064400000 26100000 35841000 36951000 608460000 587750000 542800000 14770 463 14328 278023;278024;278025;278026;278027;278028;278029;278030;278031;278032;278033;278034;278035;278036;278037;278038;278039;278040;278041;278042;278043;278044;278045;278046;278047;278048;278049;278050;278051;278052;278053;278054;278055;278056;278057;278058;278059;278060;278061;278062;278063;278064;278065;278066;278067;278068;278069;278070;278071;278072;278073;278074;278075;278076;278077;278078;278079;278080;278081;278082;278083;278084;278085;278086;278087;278088;278089;278090;278091;278092;278093;278094;278095;278096;278097;278098;278099;278100;278101;278102;278103;278104;278105;278106;278107;278108;278109;278110;278111;278112;278113;278114;278115;278116;278117;278118;278119;278120;278121;278122;278123;278124;278125;278126;278127;278128;278129;278130;278131;278132;278133;278134;278135;278136;278137;278138;278139;278140;278141;278142;278143;278144;278145;278146;278147;278148;278149;278150;278151;278152;278153;278154;278155;278156;278157;278158;278159;278160;278161;278162;278163;278164;278165;278166;278167;278168;278169;278170;278171;278172;278173;278174;278175;278176;278177;278178;278179;278180;278181;278182;278183;278184;278185;278186;278187;278188;278189;278190;278191;278192;278193;278194;278195;278196;278197;278198;278199;278200;278201;278202;278203;278204;278205;278206;278207;278208;278209;278210;278211;278212;278213 170705;170706;170707;170708;170709;170710;170711;170712;170713;170714;170715;170716;170717;170718;170719;170720;170721;170722;170723;170724;170725;170726;170727;170728;170729;170730;170731;170732;170733;170734;170735;170736;170737;170738;170739;170740;170741;170742;170743;170744;170745;170746;170747;170748;170749;170750;170751;170752;170753;170754;170755;170756;170757;170758;170759;170760;170761;170762;170763;170764;170765;170766;170767;170768;170769;170770;170771;170772;170773;170774;170775;170776;170777;170778;170779;170780;170781;170782;170783;170784;170785;170786;170787;170788;170789;170790;170791;170792;170793;170794;170795;170796;170797;170798;170799;170800;170801;170802;170803;170804;170805;170806;170807;170808;170809;170810;170811;170812;170813;170814;170815;170816;170817;170818;170819;170820;170821;170822;170823;170824;170825;170826;170827;170828;170829;170830;170831;170832;170833;170834;170835;170836;170837;170838;170839;170840;170841;170842;170843 170708 271;272 138 MNIGQILETHLGMAAK Unmodified 1725.8906 0.89059625 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 6 7 8 2 2 2 15 14 12 3 2 2 6 10 11 48.368 47.319 2;3;4 4.9212E-24 15700 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 249.75 247.06 84944000000 463950000 516440000 438440000 37054000 44148000 33311000 359680000 337650000 334900000 4590900000 3897700000 4510100000 498380000 438650000 434760000 12127000000 18120000000 19082000000 495400000 471480000 470230000 5660300000 6142700000 5438500000 14771 463 14328 278214;278215;278216;278217;278218;278219;278220;278221;278222;278223;278224;278225;278226;278227;278228;278229;278230;278231;278232;278233;278234;278235;278236;278237;278238;278239;278240;278241;278242;278243;278244;278245;278246;278247;278248;278249;278250;278251;278252;278253;278254;278255;278256;278257;278258;278259;278260;278261;278262;278263;278264;278265;278266;278267;278268;278269;278270;278271;278272;278273;278274;278275;278276;278277;278278;278279;278280;278281;278282;278283;278284;278285;278286;278287;278288;278289;278290;278291;278292;278293;278294;278295;278296;278297;278298;278299;278300;278301;278302;278303;278304;278305;278306;278307;278308;278309;278310;278311;278312;278313;278314;278315;278316;278317;278318;278319;278320;278321;278322;278323;278324;278325;278326;278327;278328;278329;278330;278331;278332;278333 170844;170845;170846;170847;170848;170849;170850;170851;170852;170853;170854;170855;170856;170857;170858;170859;170860;170861;170862;170863;170864;170865;170866;170867;170868;170869;170870;170871;170872;170873;170874;170875;170876;170877;170878;170879;170880;170881;170882;170883;170884;170885;170886;170887;170888;170889;170890;170891;170892;170893;170894;170895;170896;170897;170898;170899;170900;170901;170902;170903;170904;170905;170906;170907;170908;170909;170910;170911;170912;170913;170914;170915;170916;170917;170918;170919;170920;170921;170922;170923;170924;170925;170926;170927;170928;170929;170930;170931;170932;170933;170934;170935;170936;170937;170938;170939;170940;170941;170942;170943;170944;170945;170946;170947;170948;170949;170950;170951;170952;170953;170954;170955;170956;170957;170958;170959;170960;170961;170962;170963;170964;170965;170966;170967;170968;170969;170970;170971;170972;170973;170974;170975;170976;170977;170978;170979;170980;170981;170982;170983;170984;170985;170986;170987;170988;170989;170990;170991;170992;170993;170994;170995;170996;170997 170889 150 MNIIEANVATPDAR Unmodified 1513.7559 0.75587691 1640 P61714 ribE 6,7-dimethyl-8-ribityllumazine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 2 1 33.181 31.683 2;3 3.9421E-11 15392 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 201.6 200.23 4913200000 445640000 397350000 380580000 3509200 3063700 2993600 411280000 428690000 427420000 7935300 7042300 6577100 367980000 335590000 309230000 1666800 1080600 1166100 433000000 474110000 458540000 2263900 3939800 2581200 14772 1640 14329 278334;278335;278336;278337;278338;278339;278340;278341;278342;278343;278344;278345;278346;278347;278348;278349;278350;278351;278352;278353;278354;278355;278356;278357;278358;278359;278360;278361;278362;278363;278364;278365;278366;278367;278368;278369;278370;278371 170998;170999;171000;171001;171002;171003;171004;171005;171006;171007;171008;171009;171010;171011;171012;171013;171014;171015;171016;171017;171018;171019;171020 171001 23 MNIIEANVATPDAR Oxidation (M) 1529.7508 0.75079153 1640 P61714 ribE 6,7-dimethyl-8-ribityllumazine synthase yes yes 0 1 0 By matching By matching By MS/MS 1 1 1 28.563 27.027 2 0.0056498 12381 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 62.338 56.235 11811000 0 0 0 0 0 0 4620900 2759300 0 0 0 0 0 0 0 0 0 0 0 0 4431300 0 0 0 14773 1640 14329 278372;278373;278374 171021 171021 582 0 MNILGFFQR Unmodified 1124.5801 0.5800848 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 52.567 51.238 2 3.4538E-11 25466 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 208.61 189.13 76616000 0 4446900 5237700 1190600 1476600 0 9980600 8813100 7010000 0 3290700 5011900 0 0 3557500 0 0 0 6972800 6926300 7767700 1667600 1772700 1492900 14774 210 14330 278375;278376;278377;278378;278379;278380;278381;278382;278383;278384;278385;278386;278387;278388;278389;278390;278391;278392 171022;171023;171024 171023 3 MNILLFGK Unmodified 934.53101 0.53100934 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.248 42.733 2 0.00089325 20055 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 118.69 118.69 803630000 27186000 30387000 22950000 0 0 0 67842000 63331000 58227000 0 0 0 69632000 61863000 67748000 0 0 0 111550000 115520000 107400000 0 0 0 14775 1497 14331 278393;278394;278395;278396;278397;278398;278399;278400;278401;278402;278403;278404 171025;171026;171027;171028;171029;171030;171031 171031 7 MNIPVFHDDQHGTAIISTAAILNGLR Unmodified 2803.4439 0.44393225 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 1 1 1 2 1 1 2 2 2 2 1 50.952 49.696 3;4 5.1554E-11 24123 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 130.6 124.1 586780000 109530000 56487000 85675000 1898500 1684600 1581400 31938000 32132000 30353000 0 0 0 26827000 25004000 33005000 0 0 0 47795000 49771000 50508000 2595600 0 0 14776 1872 14332 278405;278406;278407;278408;278409;278410;278411;278412;278413;278414;278415;278416;278417;278418;278419;278420;278421;278422;278423;278424;278425;278426;278427 171032;171033;171034;171035;171036;171037 171035 6 MNIQALLSEK Unmodified 1145.6114 0.6114445 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.572 38.896 2 3.0102E-09 18765 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 196.99 180.79 1307400000 85352000 91898000 70434000 452560 400840 558240 109570000 89990000 92027000 0 0 0 99689000 118510000 108330000 0 0 0 140840000 161700000 137670000 0 0 0 14777 1073 14333 278428;278429;278430;278431;278432;278433;278434;278435;278436;278437;278438;278439;278440;278441;278442 171038;171039;171040;171041;171042;171043;171044;171045;171046;171047;171048;171049 171043 12 MNIRPLHDR Oxidation (M) 1166.5979 0.59786013 241 P0A6F9 groS 10 kDa chaperonin yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 1 2 1 1 1 1 10.692 11.506 2;3 0.00016153 2844 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.06 107.11 1059200000 98263000 87891000 25976000 0 0 493250 220160000 179610000 165630000 0 0 0 28225000 74020000 26445000 0 0 0 52585000 50978000 48945000 0 0 0 14778 241 14334 278443;278444;278445;278446;278447;278448;278449;278450;278451;278452;278453;278454;278455;278456;278457;278458;278459;278460;278461 171050;171051;171052;171053;171054;171055;171056;171057;171058;171059;171060;171061;171062;171063;171064 171058 103 15 MNIRPLHDR Unmodified 1150.6029 0.6029455 241 P0A6F9 groS 10 kDa chaperonin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 1 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 12.304 13.024 2;3 2.2052E-05 3641 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 162.97 162.97 15911000000 1577200000 1620300000 1511600000 4560500 5298500 6012600 1267400000 1254900000 1299500000 4337900 5363200 0 1119100000 1167600000 1026800000 0 3141700 0 1522100000 1219900000 1287600000 3162200 2460200 2571700 14779 241 14334 278462;278463;278464;278465;278466;278467;278468;278469;278470;278471;278472;278473;278474;278475;278476;278477;278478;278479;278480;278481;278482;278483;278484;278485;278486;278487;278488;278489;278490;278491;278492;278493;278494;278495;278496;278497 171065;171066;171067;171068;171069;171070;171071;171072;171073;171074;171075;171076;171077;171078;171079;171080;171081;171082;171083;171084;171085;171086;171087;171088;171089;171090;171091 171066 27 MNIVITGGTGLIGR Unmodified 1400.781 0.78096945 1941 P77775 yfcH Epimerase family protein YfcH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.305 40.322 2 1.1181E-05 16159 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 106.16 80.219 84359000 8546000 8809100 7248700 3960600 3100600 4049900 7788600 6899200 7172300 7233400 6966100 5302800 0 0 0 0 0 0 0 4500500 0 1320600 0 1460300 14780 1941 14335 278498;278499;278500;278501;278502;278503;278504;278505;278506;278507;278508;278509;278510;278511;278512 171092;171093;171094;171095;171096 171093 5 MNKDEAGGNWK Oxidation (M) 1264.5506 0.55063516 1720 P68206 yjbJ UPF0337 protein YjbJ yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 10.695 11.421 2 2.1442E-14 2787 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 216.12 209.23 104150000 24624000 17156000 24541000 0 0 0 12781000 10309000 14741000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14781 1720 14336 278513;278514;278515;278516;278517;278518 171097;171098;171099;171100;171101 171099 591 5 MNKDEAGGNWK Unmodified 1248.5557 0.55572054 1720 P68206 yjbJ UPF0337 protein YjbJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 11.352 12.184 2;3 2.4479E-26 3165 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 260.04 251.58 4130900000 1132700000 1165800000 1001400000 0 0 0 234030000 187050000 218940000 0 0 0 33958000 24485000 23127000 0 0 0 33813000 40739000 34920000 0 0 0 14782 1720 14336 278519;278520;278521;278522;278523;278524;278525;278526;278527;278528;278529;278530;278531;278532;278533;278534;278535;278536;278537;278538;278539;278540;278541;278542 171102;171103;171104;171105;171106;171107;171108;171109;171110;171111;171112;171113;171114;171115;171116 171114 15 MNKEILAVVEAVSNEK Unmodified 1772.9342 0.93423521 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 3 3 2 3 3 43.677 42.325 2;3 3.118E-49 14732 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 280.91 273.86 4482800000 0 0 0 0 2247400 1894400 0 0 0 218310000 185030000 163370000 0 0 0 636300000 824010000 942140000 0 0 0 502050000 416540000 590910000 14783 935 14337 278543;278544;278545;278546;278547;278548;278549;278550;278551;278552;278553;278554;278555;278556;278557;278558;278559;278560;278561;278562;278563;278564;278565;278566 171117;171118;171119;171120;171121;171122;171123;171124;171125;171126;171127;171128;171129;171130;171131;171132;171133;171134;171135;171136;171137;171138;171139;171140;171141;171142 171126 26 MNKEILAVVEAVSNEK Oxidation (M) 1788.9291 0.92914983 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 1 1 By matching By MS/MS By matching By MS/MS 1 1 1 1 36.406 36.495 2;3 0.004737 14385 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 58.487 52.763 22816000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9593800 11496000 1725500 0 0 0 0 0 0 14784 935 14337 278567;278568;278569;278570 171143;171144 171144 422 2 MNKTQLIDVIAEK Unmodified 1501.8174 0.81741453 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 29.76 28.618 2;3 9.6402E-06 9611 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 127.17 110.5 106200000 0 0 0 2197600 1615000 1572400 0 0 0 3798000 2858800 2676400 0 0 0 27511000 22305000 26883000 0 0 0 5056100 5277800 4454600 14785 726 14338 278571;278572;278573;278574;278575;278576;278577;278578;278579;278580;278581;278582;278583;278584;278585 171145;171146;171147;171148;171149;171150;171151 171145 7 MNLEMAVTEEMLAIAVETKPHFCCLVPEK Unmodified 3389.6202 0.62018334 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 55.006 53.546 4 4.2265E-11 26204 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 118.05 116.14 1490800000 132970000 142520000 150500000 0 0 1315800 106060000 121140000 89844000 0 0 0 126400000 110650000 120230000 0 0 0 135200000 117040000 136980000 0 0 0 14786 319 14339 278586;278587;278588;278589;278590;278591;278592;278593;278594;278595;278596;278597;278598 171152;171153;171154;171155;171156;171157 171154 6 MNLHEYQAK Oxidation (M) 1148.5284 0.52844316 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.017 11.833 2 4.8389E-05 3027 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.11 151.47 210460000 25699000 22206000 25285000 0 0 0 11389000 11433000 11056000 0 0 0 10062000 9871500 7970000 0 0 0 29134000 25477000 20873000 0 0 0 14787 392 14340 278599;278600;278601;278602;278603;278604;278605;278606;278607;278608;278609;278610 171158;171159;171160;171161;171162 171159 177 5 MNLHEYQAK Unmodified 1132.5335 0.53352853 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 13.017 13.749 2;3 0.00011181 4083 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.26 117.48 8619100000 1269600000 938270000 983590000 3357300 5486700 4132300 331520000 369340000 297150000 1723000 1516800 1343400 543240000 487210000 476370000 0 0 0 954620000 914470000 1024600000 3607700 3780900 4200700 14788 392 14340 278611;278612;278613;278614;278615;278616;278617;278618;278619;278620;278621;278622;278623;278624;278625;278626;278627;278628;278629;278630;278631;278632;278633;278634;278635;278636;278637;278638;278639;278640;278641;278642;278643;278644;278645;278646;278647;278648 171163;171164;171165;171166;171167;171168;171169;171170;171171;171172;171173;171174;171175;171176;171177;171178;171179;171180;171181;171182 171172 19 MNLQHHFLIAMPALQDPIFR Unmodified 2391.2344 0.23439717 467 P0A8W5 yqgE UPF0301 protein YqgE yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 49.5 48.099 3;4 4.8959E-05 23439 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.311 79.163 552080000 76419000 85772000 73091000 2530100 3364700 4498600 30450000 31006000 22929000 8455000 6605700 8144500 27961000 18878000 22089000 0 0 0 42055000 43374000 38001000 3437900 3017000 0 14789 467 14341 278649;278650;278651;278652;278653;278654;278655;278656;278657;278658;278659;278660;278661;278662;278663;278664;278665;278666;278667;278668;278669;278670;278671;278672;278673;278674;278675;278676;278677;278678;278679;278680;278681;278682;278683;278684 171183;171184;171185;171186;171187;171188 171185 6 MNLTELK Unmodified 847.44734 0.44733929 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 24.117 23.249 2 0.006056 7439 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 97.068 37.427 328620000 0 133680000 0 12151000 11073000 10755000 0 0 0 51230000 43365000 45457000 0 0 0 3463300 1469200 1199600 0 0 0 5215200 5280300 4275600 14790 982 14342 278685;278686;278687;278688;278689;278690;278691;278692;278693;278694;278695;278696;278697 171189;171190;171191;171192;171193 171191 4 MNMDGVR Unmodified 821.35239 0.35239305 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 2 1 2 1 2 1 1 1 1 1 2 2 2 2 13.992 14.626 2 0.00029567 3876 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 158.53 132.43 15890000000 365980000 405550000 370280000 1336000000 1470300000 1498700000 495520000 459680000 427990000 169560000 164230000 143100000 368460000 350660000 305420000 27937000 23808000 26629000 515610000 527820000 494090000 2086800000 1967500000 1888400000 14791 939 14343 278698;278699;278700;278701;278702;278703;278704;278705;278706;278707;278708;278709;278710;278711;278712;278713;278714;278715;278716;278717;278718;278719;278720;278721;278722;278723;278724;278725;278726;278727;278728;278729;278730;278731 171194;171195;171196;171197;171198;171199;171200;171201;171202;171203;171204;171205;171206;171207;171208;171209;171210;171211;171212;171213;171214;171215;171216;171217;171218;171219;171220;171221;171222;171223;171224 171206 30 MNMDGVR Oxidation (M) 837.34731 0.34730767 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 3 3 3 2 2 2 2 2 1 3 3 4 4 4 3 11.83 12.491 2 0.0018284 2383 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 130.05 110.2 2063100000 61850000 57492000 48955000 222410000 235710000 258370000 92053000 92315000 85120000 57561000 51803000 54859000 36403000 29840000 24834000 0 0 1113900 75364000 66100000 92873000 123320000 170020000 124710000 14792 939 14343 278732;278733;278734;278735;278736;278737;278738;278739;278740;278741;278742;278743;278744;278745;278746;278747;278748;278749;278750;278751;278752;278753;278754;278755;278756;278757;278758;278759;278760;278761;278762;278763;278764;278765;278766;278767;278768;278769;278770;278771;278772;278773;278774;278775;278776;278777;278778;278779;278780;278781;278782;278783;278784;278785;278786;278787;278788;278789 171225;171226;171227;171228;171229;171230;171231;171232;171233;171234;171235;171236;171237;171238;171239;171240;171241;171242;171243;171244;171245;171246;171247;171248;171249;171250;171251;171252;171253;171254;171255 171246 435;436 26 MNNDVFPNK Unmodified 1077.4913 0.49132937 1208 P23522 garL 5-keto-4-deoxy-D-glucarate aldolase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 18.662 19.224 2 4.2164E-05 7231 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 151.04 144.8 215420000 18630000 0 14554000 0 0 0 24638000 27232000 21391000 0 0 0 18843000 20693000 18875000 0 0 0 18664000 16767000 15127000 0 0 0 14793 1208 14344 278790;278791;278792;278793;278794;278795;278796;278797;278798;278799;278800 171256;171257;171258;171259;171260;171261 171259 6 MNNEETFYQAMR Unmodified 1532.6388 0.63879824 1738 P69739 hyaA Hydrogenase-1 small chain yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 31.218 29.117 2 3.0258E-05 14024 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.97 113.56 30523000 0 0 0 0 0 0 9196000 4744000 6440500 3650700 3356800 3135100 0 0 0 0 0 0 0 0 0 0 0 0 14794 1738 14345 278801;278802;278803;278804;278805;278806 171262 171262 1 MNNFNLHTPTR Unmodified 1343.6405 0.64045322 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.563 19.153 3 0.0054211 7427 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 47.154 45.715 973010000 44923000 45242000 38965000 0 0 0 133140000 128560000 117280000 0 0 0 88525000 82434000 78831000 0 0 0 69306000 73044000 72756000 0 0 0 14795 1959 14346 278807;278808;278809;278810;278811;278812;278813;278814;278815;278816;278817;278818 171263;171264;171265;171266;171267;171268;171269;171270;171271;171272 171264 9 MNNGWDEFSIPK Unmodified 1436.6395 0.63945017 830 P0AE22 aphA Class B acid phosphatase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.434 39.76 2 0.010008 18695 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 61.958 60.584 177900000 19342000 18841000 17002000 0 0 0 12406000 10035000 11280000 0 0 0 17529000 14660000 14934000 0 0 0 13318000 15246000 13306000 0 0 0 14796 830 14347 278819;278820;278821;278822;278823;278824;278825;278826;278827;278828;278829;278830 171273;171274;171275;171276;171277;171278;171279;171280 171278 8 MNNIAPQSPVMR Unmodified 1356.6642 0.66422513 1527 P39337 yjgM Uncharacterized N-acetyltransferase YjgM yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 24.327 23.258 2 0.10001 10520 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 41.399 39.429 27601000 0 0 5427900 0 0 0 6379200 3762800 4433800 0 0 0 0 0 0 0 0 0 3700900 0 3896700 0 0 0 14797 1527 14348 278831;278832;278833;278834;278835;278836 171281 171281 0 MNNMNVIIADDHPIVLFGIR Unmodified 2281.1711 0.17112821 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 51.54 50.649 3 1.2634E-14 19466 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 142.3 139.29 544860000 83874000 87643000 79836000 12878000 0 0 0 50720000 0 0 0 0 25267000 0 0 42879000 27471000 32073000 53107000 49109000 0 0 0 0 14798 1050 14349 278837;278838;278839;278840;278841;278842;278843;278844;278845;278846;278847 171282;171283;171284;171285;171286;171287;171288;171289;171290 171282 9 MNNMNVIIADDHPIVLFGIRK Unmodified 2409.2661 0.26609123 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 45.12 43.57 4 0.047932 15536 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 36.805 33.707 20459000 0 0 0 1991400 2563000 2784600 0 0 0 0 3333700 0 0 0 0 0 1950000 0 0 0 0 3241600 1985400 2609600 14799 1050 14350 278848;278849;278850;278851;278852;278853;278854;278855 171291;171292 171292 2 MNNNDLVAK Unmodified 1017.4913 0.49132937 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 13.395 14.018 2 0.017618 4301 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.673 36.536 60467000 16345000 16596000 0 0 0 0 0 11097000 14984000 1444900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14800 194 14351 278856;278857;278858;278859;278860;278861 171293;171294 171293 2 MNNPAMTIK Unmodified 1018.494 0.49397191 747 P0ACU0 ybiH Uncharacterized HTH-type transcriptional regulator YbiH yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 18.915 19.416 2 0.037298 7292 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 57.859 51.556 73407000 13930000 15885000 8247700 0 0 0 6949500 5201500 6736300 0 0 0 5705600 0 0 0 0 0 6058700 0 4693000 0 0 0 14801 747 14352 278862;278863;278864;278865;278866;278867;278868;278869;278870 171295 171295 1 MNPDGIFLSNGPGDPAPCDYAITAIQK Unmodified 2861.3364 0.33641522 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 51.767 50.584 2 3.5947E-41 24730 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 219.96 212.37 164190000 42385000 40954000 39308000 0 0 0 0 0 0 0 0 0 3420700 0 2719900 0 0 0 12351000 9946100 13104000 0 0 0 14802 238 14353 278871;278872;278873;278874;278875;278876;278877;278878 171296;171297;171298;171299 171298 4 MNPETNSIANR Unmodified 1245.5772 0.57718426 926 P0AFC3 nuoA NADH-quinone oxidoreductase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.136 14.714 2 2.5842E-07 3806 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 161.79 159.73 612220000 22663000 0 0 8633100 9582400 9746900 41243000 40590000 37034000 24629000 23272000 22585000 50270000 40345000 41413000 6166800 4359600 4079500 61800000 57429000 56898000 15867000 15522000 18086000 14803 926 14354 278879;278880;278881;278882;278883;278884;278885;278886;278887;278888;278889;278890;278891;278892;278893;278894;278895;278896;278897;278898;278899;278900;278901 171300;171301;171302;171303;171304;171305;171306;171307;171308;171309;171310;171311;171312;171313;171314;171315;171316;171317;171318;171319;171320;171321 171309 21 MNPQLLR Unmodified 870.47456 0.47455709 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.375 20.783 2 0.0038447 8381 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 106.29 96.536 345410000 4070100 4526600 4279900 564980 581930 477960 39857000 44047000 45329000 0 0 0 29524000 31087000 25615000 0 0 0 44327000 35827000 35298000 0 0 0 14804 785 14355 278902;278903;278904;278905;278906;278907;278908;278909;278910;278911;278912;278913;278914;278915;278916 171322;171323;171324;171325;171326;171327;171328;171329;171330 171324 9 MNQAIQFPDREEWDENKK Unmodified 2277.0484 0.048430116 1580 P45795 yrdB Uncharacterized protein YrdB yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 26.764 25.647 3 0.00012784 11652 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 69.485 65.046 55570000 4254700 8918700 5555500 0 0 0 5157700 0 4198400 0 0 0 0 3751500 4262800 0 0 0 6563700 6628900 6277700 0 0 0 14805 1580 14356 278917;278918;278919;278920;278921;278922;278923;278924;278925;278926 171331 171331 1 MNQLLVS Unmodified 803.42112 0.42112454 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.355 31.879 2 0.16199 15218 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 43.066 42.152 199780000 18549000 17409000 14382000 377380 319940 428140 14275000 16093000 17008000 0 0 0 17129000 10949000 11043000 0 0 0 19177000 25214000 17432000 0 0 0 14806 295 14357 278927;278928;278929;278930;278931;278932;278933;278934;278935;278936;278937;278938;278939;278940;278941 171332 171332 1 MNQNLLVTK Unmodified 1059.5747 0.57466507 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.054 21.382 2 0.0020274 8485 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.893 56.963 682140000 29567000 28216000 24092000 0 0 0 50842000 54788000 52543000 0 0 0 93830000 85009000 80172000 0 0 0 183080000 0 0 0 0 0 14807 29 14358 278942;278943;278944;278945;278946;278947;278948;278949;278950;278951;278952 171333;171334;171335;171336;171337;171338;171339 171335 7 MNQTLLSSFGTPFER Unmodified 1726.8349 0.83485551 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 49.045 47.7 2;3 6.2833E-37 22201 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 270.74 263.61 1466700000 58714000 58570000 50851000 0 0 0 172650000 174940000 178520000 0 0 0 128900000 130950000 110450000 0 0 0 137300000 129030000 135830000 0 0 0 14808 348 14359 278953;278954;278955;278956;278957;278958;278959;278960;278961;278962;278963;278964;278965;278966;278967;278968;278969;278970;278971;278972;278973;278974;278975 171340;171341;171342;171343;171344;171345;171346;171347;171348;171349;171350;171351;171352;171353;171354;171355;171356;171357;171358;171359 171358 20 MNQVAVVIGGGQTLGAFLCHGLAAEGYR Unmodified 2888.4426 0.44255204 116 P05707 srlD Sorbitol-6-phosphate 2-dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.156 52.708 3 1.7965E-31 26155 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 196.49 178.19 441560000 33228000 34510000 32276000 0 0 0 76392000 54559000 47971000 0 0 0 37192000 25607000 31938000 0 0 0 35061000 32825000 0 0 0 0 14809 116 14360 278976;278977;278978;278979;278980;278981;278982;278983;278984;278985;278986 171360;171361;171362;171363 171360 4 MNSIEQALK Unmodified 1032.5274 0.52738052 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 24.096 22.915 2 0.00097575 7811 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 82.452 62.816 19182000 0 0 0 0 0 0 0 0 0 0 3979300 4983200 0 0 0 0 0 0 0 10219000 0 0 0 0 14810 975 14361 278987;278988;278989;278990 171364;171365;171366;171367 171366 2 MNSLIAQYPLVK Unmodified 1375.7534 0.75335771 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.249 38.584 2 2.646E-05 18632 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 140.16 136.91 320740000 13896000 13321000 12472000 0 0 0 32210000 34507000 38625000 0 0 0 19900000 18089000 15172000 0 0 0 45828000 36644000 40081000 0 0 0 14811 51 14362 278991;278992;278993;278994;278995;278996;278997;278998;278999;279000;279001;279002 171368;171369;171370;171371;171372;171373;171374;171375;171376 171373 9 MNTALAQQIANEGGVEAWMIAQQHK Unmodified 2738.3269 0.32685358 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 3 2 2 3 3 3 1 2 2 49.205 47.849 2;3;4 4.591E-72 23217 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 279.79 277.44 1966000000 143820000 118160000 127170000 0 0 3821600 122840000 122160000 120490000 0 0 0 159870000 128460000 157150000 0 0 0 246320000 268390000 232860000 4540900 4805500 5161500 14812 1218 14363 279003;279004;279005;279006;279007;279008;279009;279010;279011;279012;279013;279014;279015;279016;279017;279018;279019;279020;279021;279022;279023;279024;279025;279026;279027;279028;279029;279030;279031;279032;279033;279034;279035;279036 171377;171378;171379;171380;171381;171382;171383;171384;171385;171386;171387;171388;171389;171390;171391;171392 171383 16 MNTEATHDQNEALTTGAR Unmodified 1958.8752 0.87521678 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.5 14.133 3 1.828E-22 4364 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 183.88 181.22 387220000 18913000 21254000 18188000 5017800 4284400 5808000 28710000 23199000 23987000 19191000 16484000 19346000 23096000 14093000 19355000 0 1877900 1801600 37400000 29877000 34287000 7483400 6345800 7221200 14813 1304 14364 279037;279038;279039;279040;279041;279042;279043;279044;279045;279046;279047;279048;279049;279050;279051;279052;279053;279054;279055;279056;279057;279058;279059 171393;171394;171395;171396;171397;171398;171399;171400;171401;171402;171403;171404;171405;171406;171407;171408;171409;171410;171411;171412;171413 171403 21 MNTISSLETTDLPAAYHIEQR Unmodified 2389.1584 0.1583745 487 P0A944 rimI Ribosomal-protein-alanine acetyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.856 38.182 3 8.4431E-07 19052 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.885 92.926 177610000 18043000 19822000 17985000 0 0 0 12036000 12264000 10563000 0 0 0 13605000 11756000 9570600 0 0 0 17062000 16957000 17943000 0 0 0 14814 487 14365 279060;279061;279062;279063;279064;279065;279066;279067;279068;279069;279070;279071 171414;171415;171416;171417;171418 171414 5 MNTQQLAK Unmodified 932.47495 0.47495102 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.128 12.842 2 0.0020298 3576 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.91 93.215 204640000 9072500 8041000 8769500 0 0 0 17313000 12158000 16481000 1654800 0 1597200 20469000 17656000 14683000 0 0 0 23658000 27159000 24291000 0 1633400 0 14815 1145 14366 279072;279073;279074;279075;279076;279077;279078;279079;279080;279081;279082;279083;279084;279085;279086 171419;171420;171421;171422 171419 3 MNTTPSQR Unmodified 933.43381 0.43381449 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 10.38 11.467 2 0.0010062 2010 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 113.91 75.114 28462000 0 0 0 11376000 6946100 10140000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14816 114 14367 279087;279088;279089 171423;171424;171425 171425 3 MNTTTPMGMLQQPR Oxidation (M) 1620.7422 0.74221746 1446 P36837 dtpB Dipeptide and tripeptide permease B yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 25.297 24.321 2 0.030301 10415 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 46.606 31.915 32475000 4408100 0 3574600 1156900 855050 0 0 0 0 0 0 0 7994400 4246000 5785100 0 0 0 0 0 4454900 0 0 0 14817 1446 14368 279090;279091;279092;279093;279094;279095;279096;279097 171426 171426 553;554 1 MNTVCTHCQAINR Unmodified 1603.7017 0.70174962 1018 P0AGG4 trxC Thioredoxin-2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 12.388 13.234 3 0.12448 3642 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 32.567 32.567 182180000 36998000 30686000 0 0 0 0 0 0 0 0 0 0 20601000 0 13921000 0 0 0 32116000 26790000 21068000 0 0 0 14818 1018 14369 279098;279099;279100;279101;279102;279103;279104 171427;171428 171428 1 MNVIAILNHMGVYFK Unmodified 1748.9106 0.91060341 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 54.507 53.015 3 4.8633E-06 25245 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 75.589 73.792 76632000 0 0 0 0 0 0 14286000 12660000 10174000 0 0 0 14144000 14148000 11219000 0 0 0 0 0 0 0 0 0 14819 520 14370 279105;279106;279107;279108;279109;279110 171429 171429 1 MNVPFQLADSALDK Unmodified 1547.7654 0.76537896 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 3 1 1 1 1 1 2 2 1 2 1 46.278 44.713 2;3 7.7584E-08 18280 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 136.81 126.28 3562200000 531920000 543490000 540900000 11111000 10628000 8669000 240150000 226680000 212360000 11829000 11036000 7070800 192790000 192840000 188680000 0 0 0 203330000 215630000 213100000 0 0 0 14820 1211 14371 279111;279112;279113;279114;279115;279116;279117;279118;279119;279120;279121;279122;279123;279124;279125;279126;279127;279128;279129;279130;279131;279132;279133;279134;279135;279136;279137;279138 171430;171431;171432;171433;171434;171435;171436;171437;171438;171439;171440;171441;171442;171443;171444;171445;171446;171447;171448 171430 19 MNVPFQLADSALDKLFLEESFAAGLHALK Unmodified 3174.6424 0.64235729 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 55.06 53.603 4 3.8672E-16 21846 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 140.09 138.08 503940000 18998000 25759000 26123000 51153000 72512000 57271000 6915800 4898500 7545700 62101000 72052000 60096000 0 3269200 0 0 0 0 0 7861500 10057000 7592000 4901100 4838000 14821 1211 14372 279139;279140;279141;279142;279143;279144;279145;279146;279147;279148;279149;279150;279151;279152;279153;279154;279155;279156;279157 171449;171450;171451;171452;171453;171454 171449 6 MNYEIKQEEKR Unmodified 1466.7188 0.71876312 1402 P33012 sbmC DNA gyrase inhibitor yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 3 3 3 3 1 3 1 2 1 1 11.885 12.457 2;3;4 4.0711E-05 2527 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 126.19 113.77 178950000 0 0 0 45850000 48996000 42684000 0 0 0 13215000 6239800 10926000 0 0 0 0 0 788480 0 0 0 5107200 930930 4209600 14822 1402 14373 279158;279159;279160;279161;279162;279163;279164;279165;279166;279167;279168;279169;279170;279171;279172;279173;279174;279175;279176;279177;279178 171455;171456;171457;171458;171459;171460;171461;171462;171463;171464;171465 171457 11 MNYQNDDLR Unmodified 1167.4979 0.49787131 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.15 16.783 2 9.6568E-06 5519 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 167.24 160.51 967620000 163650000 154200000 137810000 4892000 4147300 4234100 46501000 55248000 51107000 6886700 8141800 4499600 54675000 53696000 50035000 0 0 0 56211000 46280000 49475000 5917900 5803300 4205800 14823 639 14374 279179;279180;279181;279182;279183;279184;279185;279186;279187;279188;279189;279190;279191;279192;279193;279194;279195;279196;279197;279198;279199 171466;171467;171468;171469;171470;171471;171472;171473;171474;171475;171476;171477;171478;171479;171480 171480 15 MNYVPEPEK Unmodified 1105.5114 0.51139611 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.03 20.422 2 0.00078717 7940 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.25 89.298 170940000 28312000 25857000 30542000 0 0 0 8900800 6713600 9297500 0 0 2668600 7511100 0 6855900 0 0 0 13853000 14351000 16079000 0 0 0 14824 198 14375 279200;279201;279202;279203;279204;279205;279206;279207;279208;279209;279210;279211 171481;171482;171483;171484 171482 4 MPAMTQYIDGTGPLWK Unmodified 1807.8637 0.8637128 1535 P39396 yjiY Inner membrane protein YjiY yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.78 48.321 2 4.3861E-10 23488 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.99 167.15 76827000 0 0 0 0 0 0 8527700 7285200 7410100 0 0 0 7272900 0 0 0 0 0 13049000 16681000 16601000 0 0 0 14825 1535 14376 279212;279213;279214;279215;279216;279217;279218 171485;171486;171487 171486 3 MPDAVSLAQR Unmodified 1086.5492 0.5491786 718 P0ACC1 prmC Release factor glutamine methyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.368 24.279 2 0.034189 10339 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 59.153 48.443 69068000 9743500 7114600 6270700 0 0 0 3993200 4737800 4244300 0 0 0 6478100 3909600 5318600 0 0 0 7501900 3583400 6171800 0 0 0 14826 718 14377 279219;279220;279221;279222;279223;279224;279225;279226;279227;279228;279229;279230 171488;171489;171490 171490 2 MPDGSLLNR Unmodified 1001.4964 0.49641475 1646 P62601 treF Cytoplasmic trehalase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 24.681 23.624 2 0.12446 10794 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 40.352 28.583 34110000 5048300 5031800 5753500 0 0 0 8827400 0 7042200 0 0 1085500 0 0 0 0 0 0 1321800 0 0 0 0 0 14827 1646 14378 279231;279232;279233;279234;279235;279236;279237 171491 171491 1 MPDWVQTGFTEYLR Unmodified 1741.8134 0.81339179 435 P0A8I8 rlmH Ribosomal RNA large subunit methyltransferase H yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.129 51.689 2 1.6615E-19 24277 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 208.56 204.79 176510000 21678000 16846000 15018000 0 0 0 11182000 10766000 8922000 0 0 0 13386000 11815000 13922000 0 0 0 18313000 17485000 17177000 0 0 0 14828 435 14379 279238;279239;279240;279241;279242;279243;279244;279245;279246;279247;279248;279249 171492;171493;171494;171495;171496;171497;171498;171499;171500;171501;171502 171502 11 MPEDLLTR Unmodified 973.49027 0.49026674 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.425 27.039 2 0.0053093 11991 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.833 65.305 287870000 40910000 0 33966000 839470 1026200 956920 38788000 26081000 28843000 1579100 0 0 14821000 16373000 15207000 0 0 0 24548000 22649000 21285000 0 0 0 14829 1910 14380 279250;279251;279252;279253;279254;279255;279256;279257;279258;279259;279260;279261;279262;279263;279264;279265 171503;171504;171505;171506;171507;171508;171509;171510 171508 8 MPEEVEELEQQR Unmodified 1515.6875 0.68752257 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 3 2 2 2 2 2 2 3 2 2 2 2 3 2 2 2 2 2 30.363 28.972 2;3 1.1319E-16 13568 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 239.93 214.04 1081700000 79540000 66853000 61743000 3701600 3268600 4090600 74641000 72267000 69724000 33289000 31299000 30621000 57543000 58305000 56662000 24228000 16101000 18927000 86650000 84197000 80442000 21145000 24010000 22467000 14830 1057 14381 279266;279267;279268;279269;279270;279271;279272;279273;279274;279275;279276;279277;279278;279279;279280;279281;279282;279283;279284;279285;279286;279287;279288;279289;279290;279291;279292;279293;279294;279295;279296;279297;279298;279299;279300;279301;279302;279303;279304;279305;279306;279307;279308;279309;279310;279311;279312;279313;279314;279315;279316;279317;279318 171511;171512;171513;171514;171515;171516;171517;171518;171519;171520;171521;171522;171523;171524;171525;171526;171527;171528;171529;171530;171531;171532;171533;171534;171535;171536;171537;171538;171539;171540;171541;171542 171530 32 MPEEVEELEQQRR Unmodified 1671.7886 0.7886336 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 24.93 23.922 2;3 2.6629E-07 7334 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 128.85 120.93 448710000 3577000 8125400 0 5942500 6288000 5515600 4188300 6222000 0 56353000 62213000 53054000 0 0 0 47469000 37104000 37409000 4763700 0 0 36063000 37841000 36583000 14831 1057 14382 279319;279320;279321;279322;279323;279324;279325;279326;279327;279328;279329;279330;279331;279332;279333;279334;279335;279336;279337;279338;279339;279340;279341;279342;279343;279344;279345 171543;171544;171545;171546;171547;171548;171549;171550;171551;171552;171553;171554;171555;171556;171557;171558;171559 171546 17 MPEVNEAIPMPLGHGALEIGER Unmodified 2359.1664 0.16643676 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.481 44.853 3 0.0020939 17709 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 58.324 56.959 232600000 17412000 12498000 14805000 3234500 4472600 3928300 10908000 8931400 10398000 12246000 10184000 12312000 11246000 9341600 8021300 0 0 0 19718000 24034000 17445000 6441300 7270000 7755400 14832 1488 14383 279346;279347;279348;279349;279350;279351;279352;279353;279354;279355;279356;279357;279358;279359;279360;279361;279362;279363;279364;279365;279366 171560;171561;171562;171563;171564;171565;171566;171567;171568 171562 3 MPFFFNLK Unmodified 1042.531 0.53100934 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.395 50.197 2 0.00036739 20165 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 143.18 136.35 676250000 28860000 26578000 24566000 6679400 6656900 6178700 67577000 64311000 66311000 40457000 45928000 50647000 27575000 26170000 25306000 4740200 2573700 0 38921000 35498000 33948000 15107000 17226000 14441000 14833 122 14384 279367;279368;279369;279370;279371;279372;279373;279374;279375;279376;279377;279378;279379;279380;279381;279382;279383;279384;279385;279386;279387;279388;279389 171569;171570;171571;171572;171573;171574;171575;171576;171577;171578;171579;171580;171581;171582;171583;171584;171585;171586;171587;171588;171589 171572 21 MPFTLGQR Unmodified 948.48512 0.48512178 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 29.86 28.535 2 8.1081E-05 9096 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 164.89 132.42 410840000 0 0 0 0 0 0 0 0 0 25358000 23096000 23950000 0 0 0 93548000 63156000 69377000 0 0 0 40329000 35925000 36101000 14834 1616 14385 279390;279391;279392;279393;279394;279395;279396;279397;279398 171590;171591;171592;171593;171594;171595;171596;171597 171591 8 MPGDLSEYSVIQTK Unmodified 1566.76 0.75995923 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 2 2 2 2 2 2 1 37.94 36.309 2;3 7.4269E-11 17667 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.81 149.18 1546100000 106260000 97715000 80881000 925490 678560 833430 124310000 122740000 127680000 0 0 0 137930000 115530000 123180000 0 0 0 177730000 169450000 159140000 0 0 1079300 14835 583 14386 279399;279400;279401;279402;279403;279404;279405;279406;279407;279408;279409;279410;279411;279412;279413;279414;279415;279416;279417;279418;279419;279420;279421;279422;279423 171598;171599;171600;171601;171602;171603;171604;171605;171606;171607;171608;171609;171610;171611 171605 13 MPGVSADDQR Unmodified 1074.4764 0.47640759 947 P0AFJ7 pitA Low-affinity inorganic phosphate transporter 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.144 14.831 2 0.043864 3542 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 52.278 50.137 189510000 6082800 6636300 5824700 2027700 0 0 17780000 18707000 16806000 0 0 0 0 19061000 15412000 1387600 828630 1075300 27741000 24463000 25672000 0 0 0 14836 947 14387 279424;279425;279426;279427;279428;279429;279430;279431;279432;279433;279434;279435;279436;279437;279438 171612;171613;171614 171613 2 MPIITFIDTPGAYPGVGAEER Unmodified 2233.1089 0.10890511 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 53.59 52.156 2;3 4.0927E-88 25834 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 321.85 309.22 2185700000 178250000 138800000 127640000 0 0 0 163400000 187340000 185670000 0 0 0 154250000 123240000 111320000 0 0 0 276860000 275600000 241530000 11397000 5202300 5242500 14837 651 14388 279439;279440;279441;279442;279443;279444;279445;279446;279447;279448;279449;279450;279451;279452;279453;279454;279455;279456;279457;279458;279459;279460;279461;279462;279463;279464;279465;279466 171615;171616;171617;171618;171619;171620;171621;171622;171623;171624;171625;171626;171627;171628;171629;171630;171631;171632;171633;171634;171635;171636;171637;171638;171639 171617 23 MPILPAVQK Unmodified 995.58377 0.58377319 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 30.726 29.41 2 0.00028045 13589 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.56 119.56 60881000 22431000 19823000 16298000 0 0 0 0 2328800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14838 1554 14389 279467;279468;279469;279470 171640;171641;171642 171642 3 MPLVEIIR Unmodified 969.56812 0.56812313 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 39.597 37.986 2 3.5934E-05 18369 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 173.85 138.65 295270000 94877000 92572000 74337000 1301900 1250800 966480 0 1885800 0 0 0 0 3491900 2360400 4269000 0 0 0 4888000 6878200 6188400 0 0 0 14839 1173 14390 279471;279472;279473;279474;279475;279476;279477;279478;279479;279480;279481;279482;279483 171643;171644;171645;171646;171647 171646 5 MPMVQKK Unmodified 860.46122 0.46121521 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.37 11.789 2 0.0023322 2511 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 122.51 108.84 234190000 0 0 0 12467000 14631000 14788000 0 0 0 44933000 50008000 41453000 0 0 0 5888300 0 2515000 0 0 0 17280000 15576000 14646000 14840 293 14391 279484;279485;279486;279487;279488;279489;279490;279491;279492;279493;279494 171648;171649;171650;171651;171652;171653;171654;171655;171656 171649 9 MPNLLPFQTK Unmodified 1187.6373 0.63726532 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.579 42.064 2 1.2821E-06 20533 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.61 163.36 1596200000 80245000 80923000 68186000 0 0 0 116050000 109310000 114070000 0 0 0 148330000 155710000 148830000 0 0 0 198440000 188970000 187140000 0 0 0 14841 1283 14392 279495;279496;279497;279498;279499;279500;279501;279502;279503;279504;279505;279506 171657;171658;171659;171660;171661;171662;171663;171664 171657 8 MPPAEGETGGQVLGSQVLK Unmodified 1896.9615 0.96151259 998 P0AG93 secF Protein translocase subunit SecF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.562 31.929 2 1.5918E-09 15228 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 139.3 131.19 64895000 0 0 2275500 825610 0 649110 4569400 6267600 4891600 3109700 1727700 1873100 4922300 2692300 3248000 525270 0 0 7159600 7626900 7177800 2446900 1709300 1197600 14842 998 14393 279507;279508;279509;279510;279511;279512;279513;279514;279515;279516;279517;279518;279519;279520;279521;279522;279523;279524;279525 171665 171665 1 MPQHDQLHR Unmodified 1160.5509 0.55090993 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 10.433 11.265 2 0.0335 2489 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 58.981 48.994 65935000 14537000 0 0 0 0 0 5750700 4825500 4512600 0 0 0 6804500 6116200 5115900 0 0 0 0 7861900 10411000 0 0 0 14843 292 14394 279526;279527;279528;279529;279530;279531;279532;279533;279534 171666;171667 171667 2 MPQPYIK Unmodified 875.45751 0.45751004 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.536 19.766 2 0.0073714 6160 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 91.584 72.9 208800000 0 3021400 3150900 12369000 12148000 11935000 9273200 12222000 9786100 16997000 13798000 14058000 0 0 6468400 5818600 3031200 3397900 12098000 12528000 11930000 10499000 11092000 13180000 14844 1427 14395 279535;279536;279537;279538;279539;279540;279541;279542;279543;279544;279545;279546;279547;279548;279549;279550;279551;279552;279553;279554;279555 171668;171669;171670;171671;171672;171673;171674;171675;171676 171670 9 MPSAVGYQPTLAEEMGVLQER Unmodified 2305.1083 0.10825318 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 49.652 48.416 2;3 3.808E-35 23525 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 271.2 259.05 6260600000 166050000 150410000 136880000 50137000 50944000 47464000 407640000 419130000 423090000 184730000 142490000 143150000 544980000 522870000 466180000 55965000 44932000 46930000 623070000 577020000 596730000 152420000 157050000 150290000 14845 646 14396 279556;279557;279558;279559;279560;279561;279562;279563;279564;279565;279566;279567;279568;279569;279570;279571;279572;279573;279574;279575;279576;279577;279578;279579;279580;279581;279582;279583;279584;279585;279586;279587;279588;279589;279590;279591;279592;279593;279594;279595;279596;279597;279598;279599;279600;279601;279602;279603 171677;171678;171679;171680;171681;171682;171683;171684;171685;171686;171687;171688;171689;171690;171691;171692;171693;171694;171695;171696;171697;171698;171699;171700;171701;171702;171703;171704;171705;171706;171707;171708;171709;171710;171711;171712;171713;171714;171715;171716;171717;171718;171719;171720;171721;171722 171703 46 MPSYVDDK Unmodified 953.41643 0.41643309 1866 P76507 yfdI Uncharacterized protein YfdI yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.328 16.925 2 0.082388 5904 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 52.937 42.511 99375000 0 0 0 0 0 0 9020800 8183900 8320300 0 0 1882500 11132000 9930600 9212300 1104800 690950 778450 12215000 14250000 12653000 0 0 0 14846 1866 14397 279604;279605;279606;279607;279608;279609;279610;279611;279612;279613;279614;279615;279616 171723;171724;171725 171723 3 MPTISGLR Unmodified 873.47422 0.47422274 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.571 25.515 2 8.8899E-05 11836 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.34 135.17 1642200000 119460000 139900000 102880000 0 0 0 142630000 136660000 135650000 0 0 0 129090000 128330000 113440000 0 0 0 176850000 159900000 157420000 0 0 0 14847 63 14398 279617;279618;279619;279620;279621;279622;279623;279624;279625;279626;279627;279628 171726;171727;171728;171729;171730;171731;171732;171733;171734 171726 9 MPTMAAMCYK Unmodified 1202.4956 0.49562816 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.819 27.327 2 0.00027586 12916 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.28 111.86 2407500000 552480000 474150000 424900000 1917300 2104700 1964200 111650000 123190000 116960000 4630500 4294400 3929400 70396000 59058000 56823000 0 0 0 133990000 134120000 126700000 1658100 1136900 1429900 14848 657 14399 279629;279630;279631;279632;279633;279634;279635;279636;279637;279638;279639;279640;279641;279642;279643;279644;279645;279646;279647;279648;279649 171735;171736;171737;171738;171739;171740;171741;171742;171743;171744;171745;171746 171738 9 MPTMAAMCYK Oxidation (M) 1218.4905 0.49054279 657 P0ABH7 gltA Citrate synthase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 20.933 21.306 2 0.0031895 8305 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.516 78.516 23321000 5345000 5327400 10851000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1797700 0 0 0 14849 657 14399 279650;279651;279652;279653;279654 171747;171748;171749 171748 362 2 MPTSLIHALALTK Unmodified 1394.7956 0.79555688 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 1 2 2 2 2 1 1 1 38.431 36.644 2;3 4.5312E-07 17559 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.58 147.58 567620000 114170000 104340000 128360000 1377800 1021300 1375000 27695000 23746000 26162000 1161100 1559000 0 12141000 9409800 12949000 0 0 0 30291000 33178000 33295000 2074300 1705700 1608500 14850 106 14400 279655;279656;279657;279658;279659;279660;279661;279662;279663;279664;279665;279666;279667;279668;279669;279670;279671;279672;279673;279674;279675;279676;279677;279678;279679;279680;279681;279682;279683;279684;279685 171750;171751;171752;171753;171754;171755;171756;171757;171758;171759;171760;171761;171762;171763;171764 171761 15 MPVVPLHGWLPDAHSQAPTAGSVDLAGILLK Unmodified 3189.7009 0.70087522 932 P0AFE8 nuoM NADH-quinone oxidoreductase subunit M yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.267 51.816 4 0.00070404 25364 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.498 58.497 336540000 11990000 11473000 10980000 0 0 0 20180000 20716000 24126000 2832700 2526700 0 37231000 38377000 35596000 0 0 0 35799000 41241000 41585000 1887200 0 0 14851 932 14401 279686;279687;279688;279689;279690;279691;279692;279693;279694;279695;279696;279697;279698;279699;279700 171765;171766;171767;171768;171769;171770;171771;171772 171767 8 MPYKGSVENGAYK Unmodified 1442.6864 0.68640036 480 P0A910 ompA Outer membrane protein A yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 1 2 2 2 1 1 2 2 2 13.81 14.147 2;3 7.9852E-06 3119 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 102.62 100.61 96116000 0 0 0 9866800 2149700 11480000 0 0 0 1873300 10702000 10509000 0 0 0 6133900 3601100 4361000 0 0 0 13154000 10667000 11619000 14852 480 14402 279701;279702;279703;279704;279705;279706;279707;279708;279709;279710;279711;279712;279713;279714;279715;279716;279717;279718;279719;279720 171773;171774;171775;171776;171777;171778;171779;171780;171781 171781 8 MPYSGLR Unmodified 822.40581 0.40580882 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 2 2 2 18.455 18.739 2 0.00013484 5538 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 170.96 134.37 8323800000 0 34308000 0 0 0 0 51113000 59964000 43735000 1100500000 947160000 774350000 39201000 58808000 36829000 1243200000 1002100000 1189700000 45267000 43031000 38844000 542920000 553880000 519000000 14853 1616 14403 279721;279722;279723;279724;279725;279726;279727;279728;279729;279730;279731;279732;279733;279734;279735;279736;279737;279738;279739;279740;279741;279742;279743;279744 171782;171783;171784;171785;171786;171787;171788;171789;171790;171791;171792;171793;171794;171795;171796;171797 171790 16 MPYSGLR Oxidation (M) 838.40072 0.40072345 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 16.419 16.614 2 0.0020407 3535 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 127.1 98.568 867780000 122030000 130060000 107270000 0 0 0 0 0 0 49719000 40892000 36179000 12706000 12079000 12577000 48316000 34583000 41351000 43471000 51132000 50550000 26684000 23465000 24702000 14854 1616 14403 279745;279746;279747;279748;279749;279750;279751;279752;279753;279754;279755;279756;279757;279758;279759;279760;279761;279762;279763;279764;279765;279766;279767;279768;279769;279770;279771;279772;279773;279774;279775;279776;279777;279778;279779;279780 171798;171799;171800;171801;171802;171803;171804;171805;171806;171807;171808 171799 564 11 MQAAGAQAYLVNTGWNGTGK Unmodified 2036.9738 0.97380861 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.431 35.757 2 6.4734E-68 17360 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 299.64 286.24 235240000 30970000 31816000 34528000 0 0 0 17212000 19086000 16598000 0 0 0 11368000 12608000 11355000 0 0 0 19156000 12718000 17828000 0 0 0 14855 1195 14404 279781;279782;279783;279784;279785;279786;279787;279788;279789;279790;279791;279792 171809;171810;171811;171812;171813;171814;171815;171816;171817;171818;171819 171814 11 MQAASGQLQQSHLLK Unmodified 1638.8512 0.85117428 357 P0A7M6 rpmC 50S ribosomal protein L29 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 18.906 19.228 2;3 5.8527E-36 7580 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 265.82 258.44 14298000000 1705200000 1886800000 1573000000 101810000 21978000 92005000 526540000 578780000 510700000 139270000 124020000 118140000 888860000 900440000 699710000 84217000 72474000 77346000 1267600000 1299500000 1219100000 127310000 143920000 139430000 14856 357 14405 279793;279794;279795;279796;279797;279798;279799;279800;279801;279802;279803;279804;279805;279806;279807;279808;279809;279810;279811;279812;279813;279814;279815;279816;279817;279818;279819;279820;279821;279822;279823;279824;279825;279826;279827;279828;279829;279830;279831;279832;279833;279834;279835;279836;279837;279838;279839 171820;171821;171822;171823;171824;171825;171826;171827;171828;171829;171830;171831;171832;171833;171834;171835;171836;171837;171838;171839;171840;171841;171842;171843;171844;171845;171846;171847;171848;171849;171850;171851;171852;171853;171854;171855;171856;171857;171858;171859;171860;171861;171862;171863;171864;171865 171832 45 MQAASGQLQQSHLLK Oxidation (M) 1654.8461 0.8460889 357 P0A7M6 rpmC 50S ribosomal protein L29 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 2 2 2 3 1 2 2 2 2 1 1 3 3 3 1 2 1 17.552 18.048 2;3 4.5634E-06 5891 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.18 94.084 375310000 44374000 37079000 40825000 4232900 4494400 3385000 16900000 17889000 18302000 6806900 4775800 6429900 15900000 20715000 21806000 2915200 0 611240 32889000 31445000 26942000 4638000 7542000 4413500 14857 357 14405 279840;279841;279842;279843;279844;279845;279846;279847;279848;279849;279850;279851;279852;279853;279854;279855;279856;279857;279858;279859;279860;279861;279862;279863;279864;279865;279866;279867;279868;279869;279870;279871;279872;279873;279874;279875;279876;279877;279878;279879;279880;279881;279882;279883;279884 171866;171867;171868;171869;171870;171871;171872;171873;171874;171875;171876;171877;171878;171879;171880;171881;171882;171883;171884 171876 155 17 MQAFSDK Unmodified 825.36909 0.36908897 811 P0ADV1 lptA Lipopolysaccharide export system protein LptA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 2 1 1 1 2 1 1 1 13.16 13.955 1;2 0.0017557 4329 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.37 95.845 660690000 83096000 77929000 68309000 0 0 0 55009000 39424000 47708000 613610 0 0 50034000 47672000 51561000 0 0 0 47829000 43233000 48273000 0 0 0 14858 811 14406 279885;279886;279887;279888;279889;279890;279891;279892;279893;279894;279895;279896;279897;279898;279899;279900;279901;279902;279903;279904;279905 171885;171886;171887;171888;171889;171890;171891;171892;171893;171894;171895 171885 11 MQAHSEETVIVGDNLR Unmodified 1797.8679 0.86794655 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 2 2 2 1 2 1 1 1 1 2 2 2 22.688 22.131 2;3 2.7809E-08 6916 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 142.57 140.99 220580000 12890000 17669000 12682000 15825000 15326000 13700000 15750000 23619000 10714000 0 0 0 9468900 9205500 9489700 0 0 0 17518000 18118000 18599000 0 0 0 14859 906 14407 279906;279907;279908;279909;279910;279911;279912;279913;279914;279915;279916;279917;279918;279919;279920;279921;279922;279923;279924;279925;279926;279927;279928 171896;171897;171898;171899;171900 171897 5 MQAIPMTLR Unmodified 1059.5569 0.55690651 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 31.406 31.109 2 0.0031097 14713 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 82.75 67.38 116730000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5303800 3882400 3450700 0 0 104090000 0 0 0 14860 288 14408 279929;279930;279931;279932 171901 171901 1 MQALGFCFSMVPAIR Unmodified 1726.8357 0.83572391 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 54.413 52.967 2 2.6706E-11 26193 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159.94 149.01 277100000 0 0 0 0 2696000 3962600 41827000 45939000 38988000 0 0 0 0 22413000 29528000 0 0 0 30191000 31878000 29678000 0 0 0 14861 1747 14409 279933;279934;279935;279936;279937;279938;279939;279940;279941;279942 171902;171903;171904;171905;171906 171904 5 MQALLLEQQDGK Unmodified 1372.7021 0.70205043 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 30.643 29.264 2 8.6992E-19 13036 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 225.66 208.54 1031400000 108860000 0 99358000 0 0 0 141760000 143030000 135070000 0 0 0 79407000 73857000 64379000 0 0 0 61338000 58930000 65385000 0 0 0 14862 1284 14410 279943;279944;279945;279946;279947;279948;279949;279950;279951;279952;279953 171907;171908;171909;171910;171911;171912;171913 171913 7 MQAVGLDLPFQTR Unmodified 1474.7602 0.76023401 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.675 45.269 2 1.3509E-12 22156 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 195.27 191.38 1415300000 139510000 136390000 112970000 951510 0 1231600 113110000 109380000 97395000 0 0 0 110300000 95643000 93015000 0 0 0 124680000 149580000 131140000 0 0 0 14863 1759 14411 279954;279955;279956;279957;279958;279959;279960;279961;279962;279963;279964;279965;279966;279967 171914;171915;171916;171917;171918;171919;171920;171921;171922;171923;171924;171925;171926 171921 12 MQDEYYMAR Unmodified 1205.4845 0.48452943 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.503 21.665 2 0.00016567 8783 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.56 126.56 182070000 18179000 14378000 16355000 0 0 0 9305000 13562000 14073000 0 0 0 14389000 17553000 15219000 0 0 0 14278000 18134000 16641000 0 0 0 14864 1262 14412 279968;279969;279970;279971;279972;279973;279974;279975;279976;279977;279978;279979 171927;171928;171929;171930;171931;171932;171933;171934;171935;171936 171930 10 MQDKDFFSWR Unmodified 1358.6078 0.60775611 155 P07026 sdiA Regulatory protein SdiA yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.592 33.074 3 0.077328 16259 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 30.55 26.905 34127000 0 0 0 0 0 0 2972300 3413000 4497500 0 0 0 4192500 3289800 3341300 0 0 0 3675600 4131600 4613400 0 0 0 14865 155 14413 279980;279981;279982;279983;279984;279985;279986;279987;279988 171937 171937 1 MQDLSLEAR Unmodified 1061.5175 0.51754412 455 P0A8R4 slyX Protein SlyX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 23.678 22.946 2 0.0017337 9765 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.639 68.949 470710000 44532000 50025000 47741000 967220 0 0 32954000 35120000 32678000 0 0 0 57706000 65266000 58646000 0 0 0 45078000 0 0 0 0 0 14866 455 14414 279989;279990;279991;279992;279993;279994;279995;279996;279997;279998;279999 171938;171939;171940;171941;171942;171943;171944 171944 5 MQDPQFAGQTK Unmodified 1249.5761 0.57612163 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 16.367 17.097 2 4.0218E-07 6110 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.18 113.82 80687000 0 0 0 0 0 0 0 0 0 0 0 1242400 12716000 10424000 11705000 546020 0 0 15408000 15245000 13399000 0 0 0 14867 1164 14415 280000;280001;280002;280003;280004;280005;280006;280007;280008;280009;280010 171945;171946;171947;171948;171949 171945 5 MQDSILTTVVK Unmodified 1233.6639 0.663874 123 P06610 btuE Vitamin B12 transport periplasmic protein BtuE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.543 33.983 2 2.076E-05 16286 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 135.55 124.84 1382600000 234260000 214100000 186190000 0 0 663630 117310000 112080000 108280000 0 0 0 54660000 58889000 55820000 0 0 0 77345000 80936000 82067000 0 0 0 14868 123 14416 280011;280012;280013;280014;280015;280016;280017;280018;280019;280020;280021;280022;280023 171950;171951;171952;171953;171954;171955;171956;171957;171958;171959;171960;171961 171954 11 MQDYTLEADEGR Unmodified 1426.6035 0.60345859 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.561 22.761 2 1.4234E-06 9820 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 148.56 148.56 600720000 42750000 44456000 40901000 2842600 2871800 3603700 24696000 22368000 26075000 5563000 4756600 3015400 40073000 38551000 38054000 1982400 0 0 77240000 92434000 77429000 3732800 3223700 4095800 14869 150 14417 280024;280025;280026;280027;280028;280029;280030;280031;280032;280033;280034;280035;280036;280037;280038;280039;280040;280041;280042;280043;280044;280045 171962;171963;171964;171965;171966;171967;171968;171969;171970;171971;171972;171973;171974;171975;171976;171977;171978;171979 171969 18 MQEALMSLMQMAK Unmodified 1510.7016 0.70159819 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 2 2 1 1 1 1 2 2 2 2 2 2 1 2 50.736 49.384 2;3 9.6883E-18 24399 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 218.6 206.97 1201700000 88573000 80213000 72739000 6318800 7631600 6133600 63281000 75783000 72454000 26071000 25729000 28294000 87341000 77719000 92379000 0 0 0 98704000 104430000 100520000 28315000 28621000 30424000 14870 547 14418 280046;280047;280048;280049;280050;280051;280052;280053;280054;280055;280056;280057;280058;280059;280060;280061;280062;280063;280064;280065;280066;280067;280068;280069;280070;280071;280072;280073;280074;280075;280076;280077;280078;280079;280080 171980;171981;171982;171983;171984;171985;171986;171987;171988;171989;171990;171991;171992;171993;171994;171995 171984 15 MQEEIAQLEVTGESGAGLVK Unmodified 2088.0409 0.040885122 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 3 1 2 3 2 3 2 2 2 3 2 2 2 2 2 2 2 2 3 41.842 40.196 2;3 7.0253E-30 19433 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 266.15 264.45 2216000000 116510000 120040000 112480000 20752000 25640000 23751000 67506000 124800000 104500000 177570000 163130000 156240000 98367000 85624000 95528000 62544000 47780000 44076000 137610000 125170000 128430000 60300000 59107000 58595000 14871 416 14419 280081;280082;280083;280084;280085;280086;280087;280088;280089;280090;280091;280092;280093;280094;280095;280096;280097;280098;280099;280100;280101;280102;280103;280104;280105;280106;280107;280108;280109;280110;280111;280112;280113;280114;280115;280116;280117;280118;280119;280120;280121;280122;280123;280124;280125;280126;280127;280128;280129;280130;280131;280132;280133 171996;171997;171998;171999;172000;172001;172002;172003;172004;172005;172006;172007;172008;172009;172010;172011;172012;172013;172014;172015;172016;172017;172018;172019;172020;172021;172022;172023;172024;172025;172026;172027;172028;172029;172030;172031;172032;172033;172034;172035;172036;172037;172038;172039;172040;172041;172042 172023 47 MQEEIAQLEVTGESGAGLVK Oxidation (M) 2104.0358 0.035799744 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 39.437 37.293 2;3 1.4239E-37 14692 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 242.41 239.63 128200000 0 0 0 910240 765900 1260200 0 0 0 37370000 26891000 9178400 0 0 0 0 0 0 0 0 0 15385000 19348000 17092000 14872 416 14419 280134;280135;280136;280137;280138;280139;280140;280141;280142;280143;280144;280145;280146;280147;280148 172043;172044;172045;172046;172047;172048;172049;172050;172051;172052;172053 172046 200 11 MQEGQNR Unmodified 861.3763 0.37629961 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.2651 6.1142 2 0.00066643 1010 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 148.07 148.07 1724600000 118570000 110780000 101900000 0 0 0 174690000 172690000 178610000 0 0 0 132700000 158600000 142430000 0 0 0 139480000 143380000 150800000 0 0 0 14873 674 14420 280149;280150;280151;280152;280153;280154;280155;280156;280157;280158;280159;280160 172054;172055;172056;172057;172058;172059;172060;172061;172062;172063;172064;172065 172055 12 MQEGQNR Oxidation (M) 877.37121 0.37121423 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 4.2102 5.0505 2 0.0028546 810 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 115.78 115.78 55250000 0 0 0 0 0 0 0 0 0 0 0 0 10613000 0 0 0 0 0 16685000 14351000 13601000 0 0 0 14874 674 14420 280161;280162;280163;280164 172066;172067;172068 172068 371 3 MQEGQNRK Unmodified 989.47126 0.47126263 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 9.1297 9.3476 2 0.010618 1585 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 81.635 55.032 12755000 0 0 0 0 0 0 0 0 0 3154500 0 0 0 0 477120 6684500 2439400 0 0 0 0 0 0 0 14875 674 14421 280165;280166;280167;280168 172069 172069 1 MQELAQVSQK Unmodified 1160.586 0.58595803 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.263 16.864 2 3.8582E-12 6001 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 204.42 191.16 11101000000 841690000 856950000 726220000 52548000 50866000 54729000 1181600000 1175600000 1100100000 96565000 105940000 0 731740000 683180000 614310000 23948000 18085000 16782000 919190000 903400000 913650000 34332000 0 0 14876 293 14422 280169;280170;280171;280172;280173;280174;280175;280176;280177;280178;280179;280180;280181;280182;280183;280184;280185;280186;280187;280188;280189 172070;172071;172072;172073;172074;172075;172076;172077;172078;172079;172080;172081;172082;172083;172084;172085;172086;172087;172088;172089;172090 172075 21 MQELAQVSQK Oxidation (M) 1176.5809 0.58087266 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.076 13.771 2 0.00088783 3581 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 89.08 73.418 329800000 31667000 34250000 33035000 1029200 1435200 1597800 28504000 32649000 29482000 13989000 7845900 8610200 13210000 14529000 11215000 0 0 0 19958000 18422000 20246000 2590900 3393400 2142300 14877 293 14422 280190;280191;280192;280193;280194;280195;280196;280197;280198;280199;280200;280201;280202;280203;280204;280205;280206;280207;280208;280209;280210 172091 172091 137 1 MQENQQITK Unmodified 1118.539 0.53900784 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.237 12.07 2 0.00012472 3168 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.4 95.85 368060000 26501000 28680000 23751000 0 0 0 19803000 28036000 25308000 0 0 0 37780000 35661000 34402000 0 0 0 36627000 32883000 38628000 0 0 0 14878 1812 14423 280211;280212;280213;280214;280215;280216;280217;280218;280219;280220;280221;280222 172092;172093;172094;172095;172096;172097;172098;172099;172100;172101 172094 10 MQEQYRPEEIESK Unmodified 1665.7668 0.76683553 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 15.776 16.592 2;3 3.5434E-31 5789 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 260.57 257.45 3169000000 261530000 295540000 261540000 0 0 0 244700000 257480000 225350000 0 0 0 262470000 236120000 249280000 0 0 0 306160000 283920000 284900000 0 0 0 14879 170 14424 280223;280224;280225;280226;280227;280228;280229;280230;280231;280232;280233;280234;280235;280236;280237;280238;280239;280240;280241;280242;280243;280244;280245;280246 172102;172103;172104;172105;172106;172107;172108;172109;172110;172111;172112;172113;172114;172115;172116;172117;172118;172119;172120;172121;172122;172123;172124;172125 172105 24 MQEWFESGLQQWDISR Unmodified 2038.9207 0.92071041 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.725 51.402 2;3 5.2775E-25 25050 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 267.67 266.36 1136800000 75890000 76416000 65650000 0 0 0 86882000 91980000 103310000 0 0 0 99975000 87320000 88558000 0 0 0 123060000 120160000 117550000 0 0 0 14880 60 14425 280247;280248;280249;280250;280251;280252;280253;280254;280255;280256;280257;280258;280259;280260;280261;280262;280263;280264;280265;280266;280267;280268;280269;280270 172126;172127;172128;172129;172130;172131;172132 172129 6 MQFGSGWWFNDQK Unmodified 1629.7034 0.70344741 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.226 48.819 2 5.5456E-09 24273 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.37 169.37 277160000 39125000 34124000 32922000 0 0 0 29675000 32761000 27158000 0 0 0 18619000 17360000 16817000 0 0 0 9020100 10013000 9560800 0 0 0 14881 427 14426 280271;280272;280273;280274;280275;280276;280277;280278;280279;280280;280281;280282 172133;172134;172135 172133 3 MQGSVTEFLK Unmodified 1138.5692 0.56924534 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.547 31.177 2 0.00012278 10903 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 128.38 95.543 96630000 5104000 4637400 6136700 0 0 0 0 0 0 3059200 4755900 4290400 0 0 0 18300000 13479000 15121000 4540600 0 0 6902300 5570500 4732800 14882 383 14427 280283;280284;280285;280286;280287;280288;280289;280290;280291;280292;280293;280294;280295 172136;172137;172138;172139;172140;172141;172142;172143 172136 8 MQGSVTEFLKPR Unmodified 1391.7231 0.72312022 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 3 2 10 12 13 2 2 2 32 29 28 2 2 2 12 17 15 34.702 33.584 1;2;3 1.5767E-16 8815 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 244.27 230.06 94205000000 1041700000 931800000 869270000 53930000 57448000 63381000 698010000 702630000 610330000 5075900000 5089500000 5373800000 631810000 579030000 596430000 18298000000 14480000000 15160000000 894350000 924650000 747100000 7339800000 6867700000 7118800000 14883 383 14428 280296;280297;280298;280299;280300;280301;280302;280303;280304;280305;280306;280307;280308;280309;280310;280311;280312;280313;280314;280315;280316;280317;280318;280319;280320;280321;280322;280323;280324;280325;280326;280327;280328;280329;280330;280331;280332;280333;280334;280335;280336;280337;280338;280339;280340;280341;280342;280343;280344;280345;280346;280347;280348;280349;280350;280351;280352;280353;280354;280355;280356;280357;280358;280359;280360;280361;280362;280363;280364;280365;280366;280367;280368;280369;280370;280371;280372;280373;280374;280375;280376;280377;280378;280379;280380;280381;280382;280383;280384;280385;280386;280387;280388;280389;280390;280391;280392;280393;280394;280395;280396;280397;280398;280399;280400;280401;280402;280403;280404;280405;280406;280407;280408;280409;280410;280411;280412;280413;280414;280415;280416;280417;280418;280419;280420;280421;280422;280423;280424;280425;280426;280427;280428;280429;280430;280431;280432;280433;280434;280435;280436;280437;280438;280439;280440;280441;280442;280443;280444;280445;280446;280447;280448;280449;280450;280451;280452;280453;280454;280455;280456;280457;280458;280459;280460;280461;280462;280463;280464;280465;280466;280467;280468;280469;280470;280471;280472;280473;280474;280475;280476;280477;280478;280479;280480;280481;280482;280483;280484;280485;280486;280487;280488;280489;280490;280491;280492;280493;280494 172144;172145;172146;172147;172148;172149;172150;172151;172152;172153;172154;172155;172156;172157;172158;172159;172160;172161;172162;172163;172164;172165;172166;172167;172168;172169;172170;172171;172172;172173;172174;172175;172176;172177;172178;172179;172180;172181;172182;172183;172184;172185;172186;172187;172188;172189;172190;172191;172192;172193;172194;172195;172196;172197;172198;172199;172200;172201;172202;172203;172204;172205;172206;172207;172208;172209;172210;172211;172212;172213;172214;172215;172216;172217;172218;172219;172220;172221;172222;172223;172224;172225;172226;172227;172228;172229;172230;172231;172232;172233;172234;172235;172236;172237;172238;172239;172240;172241;172242;172243;172244;172245;172246;172247;172248;172249;172250;172251;172252;172253;172254;172255;172256;172257;172258;172259;172260;172261;172262;172263;172264;172265;172266;172267;172268;172269;172270;172271;172272;172273;172274;172275;172276;172277;172278;172279;172280;172281;172282;172283;172284;172285;172286;172287;172288;172289;172290;172291;172292;172293;172294;172295;172296;172297;172298;172299;172300;172301;172302;172303;172304;172305;172306;172307;172308;172309;172310;172311;172312;172313;172314;172315;172316;172317;172318;172319;172320;172321;172322;172323;172324;172325;172326;172327;172328;172329;172330;172331;172332;172333;172334;172335;172336;172337;172338;172339;172340;172341;172342;172343;172344 172147 196 MQGSVTEFLKPR Oxidation (M) 1407.718 0.71803484 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 1 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 3 1 3 3 3 9 8 6 2 1 11 12 11 4 3 8 11 8 26.472 25.425 2;3 1.2219E-23 8820 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 242.83 236.8 7537400000 43119000 33379000 0 2417400 9124200 2839300 37283000 35673000 35031000 698570000 588700000 522790000 19475000 12639000 0 1368200000 1061100000 1002300000 46221000 0 41272000 823540000 692190000 461480000 14884 383 14428 280495;280496;280497;280498;280499;280500;280501;280502;280503;280504;280505;280506;280507;280508;280509;280510;280511;280512;280513;280514;280515;280516;280517;280518;280519;280520;280521;280522;280523;280524;280525;280526;280527;280528;280529;280530;280531;280532;280533;280534;280535;280536;280537;280538;280539;280540;280541;280542;280543;280544;280545;280546;280547;280548;280549;280550;280551;280552;280553;280554;280555;280556;280557;280558;280559;280560;280561;280562;280563;280564;280565;280566;280567;280568;280569;280570;280571;280572;280573;280574;280575;280576;280577;280578;280579;280580;280581;280582;280583;280584;280585;280586;280587;280588;280589;280590;280591;280592;280593;280594;280595;280596;280597;280598;280599;280600;280601;280602;280603;280604;280605;280606;280607 172345;172346;172347;172348;172349;172350;172351;172352;172353;172354;172355;172356;172357;172358;172359;172360;172361;172362;172363;172364;172365;172366;172367;172368;172369;172370;172371;172372;172373;172374;172375;172376;172377;172378;172379;172380;172381;172382;172383;172384;172385;172386;172387;172388;172389;172390;172391;172392;172393;172394;172395;172396;172397;172398;172399;172400;172401;172402;172403;172404;172405;172406;172407;172408;172409;172410;172411;172412;172413;172414;172415;172416;172417;172418;172419;172420;172421;172422;172423;172424;172425;172426;172427;172428;172429;172430;172431;172432;172433;172434;172435;172436;172437;172438;172439;172440;172441;172442;172443;172444;172445;172446;172447 172397 168 100 MQGSVTEFLKPR Acetyl (Protein N-term) 1433.7337 0.7336849 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 1 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 44.054 42.635 2 9.8388E-31 15998 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 261.16 253.51 233040000 0 0 1324500 0 0 0 0 0 0 10960000 10543000 11385000 0 0 0 62537000 46688000 51809000 0 0 0 14280000 10157000 13359000 14885 383 14428 280608;280609;280610;280611;280612;280613;280614;280615;280616;280617 172448;172449;172450;172451;172452;172453;172454;172455;172456 172448 9 MQHSYPCCWR Unmodified 1423.5584 0.55837985 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 1 16.208 16.966 2;3 5.601E-07 5995 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 198.65 198.65 1907500000 210170000 193210000 213150000 0 0 0 149170000 152330000 143830000 0 0 2493500 114450000 111400000 114200000 0 0 0 180660000 157520000 161420000 0 3472000 0 14886 58 14429 280618;280619;280620;280621;280622;280623;280624;280625;280626;280627;280628;280629;280630;280631;280632;280633;280634;280635;280636;280637;280638;280639;280640;280641;280642;280643 172457;172458;172459;172460;172461;172462;172463;172464;172465;172466;172467;172468;172469;172470;172471;172472;172473;172474;172475;172476;172477;172478;172479 172459 23 MQIDSKPEELDR Unmodified 1459.6977 0.69769333 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 18.284 18.806 2;3 3.8515E-12 6928 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 199.68 193.48 1896300000 181840000 251740000 161790000 0 0 3146100 257670000 240890000 216030000 8763600 5617700 3931300 106450000 98662000 89946000 0 0 0 94578000 90750000 84446000 0 0 0 14887 1662 14430 280644;280645;280646;280647;280648;280649;280650;280651;280652;280653;280654;280655;280656;280657;280658;280659;280660;280661;280662;280663;280664;280665;280666;280667;280668;280669;280670;280671 172480;172481;172482;172483;172484;172485;172486;172487;172488;172489;172490;172491;172492;172493;172494;172495;172496;172497;172498;172499;172500;172501;172502;172503 172496 24 MQILLANPR Unmodified 1054.5957 0.59573486 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.364 30.008 2 0.00017712 14618 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.57 124.99 489290000 49989000 44422000 40232000 0 0 0 41620000 36391000 37610000 0 0 0 33337000 35268000 31622000 0 0 0 44162000 46707000 47928000 0 0 0 14888 1650 14431 280672;280673;280674;280675;280676;280677;280678;280679;280680;280681;280682;280683 172504;172505;172506;172507;172508;172509;172510 172504 3 MQINASK Unmodified 790.40072 0.40072345 1730 P69411 rcsF Outer membrane lipoprotein RcsF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.743 12.392 2 0.0079027 2506 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 89.369 40.609 78706000 0 0 0 2408100 3422400 2398000 6618500 0 3915400 4686900 3433700 3668600 4884100 7230100 0 0 923800 0 10915000 7918100 9064700 3135500 4082800 0 14889 1730 14432 280684;280685;280686;280687;280688;280689;280690;280691;280692;280693;280694;280695;280696;280697;280698;280699 172511;172512;172513;172514 172513 2 MQLGENADVVEHLGELLK Unmodified 1994.0143 0.014276441 1563 P43671 pqiB Paraquat-inducible protein B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 50.334 48.867 3 0.14581 23832 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 30.428 26.879 72486000 6364400 4398700 0 0 0 0 5671100 7947100 5074400 2044500 0 0 6371800 5085800 0 0 0 0 11178000 8970600 9379600 0 0 0 14890 1563 14433 280700;280701;280702;280703;280704;280705;280706;280707;280708;280709;280710 172515 172515 0 MQLIGGTWYGGEMK Unmodified 1569.732 0.73197035 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.049 41.5 2 4.5557E-06 19358 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 141.08 139.35 2773100000 373140000 316750000 327700000 0 689260 0 182550000 186990000 167680000 0 0 0 186690000 188670000 181800000 0 0 0 215980000 218620000 225830000 0 0 0 14891 1195 14434 280711;280712;280713;280714;280715;280716;280717;280718;280719;280720;280721;280722;280723 172516;172517;172518;172519;172520;172521;172522;172523;172524;172525;172526;172527 172526 12 MQLNEELR Unmodified 1031.507 0.50697943 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.485 21.954 2 5.3719E-05 9165 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 170.32 134.44 1853300000 138130000 141990000 145480000 4401500 4133900 3662900 190760000 176620000 180290000 19796000 21365000 17982000 145930000 123970000 0 0 1986200 0 156460000 176140000 172710000 11285000 9574500 10576000 14892 245 14435 280724;280725;280726;280727;280728;280729;280730;280731;280732;280733;280734;280735;280736;280737;280738;280739;280740;280741;280742;280743;280744;280745 172528;172529;172530;172531;172532;172533;172534;172535;172536;172537;172538;172539;172540;172541;172542;172543;172544;172545 172540 14 MQLNEELRHEVTPK Unmodified 1722.8723 0.87230365 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 20.812 20.729 3 0.0050763 6418 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 58.04 48.591 47782000 0 0 0 3408200 2722000 3131000 0 0 0 8054000 6873300 7324600 0 0 0 0 0 0 0 0 0 5963300 5132000 5174100 14893 245 14436 280746;280747;280748;280749;280750;280751;280752;280753;280754 172546;172547;172548;172549;172550;172551;172552;172553;172554 172551 9 MQLNITGNNVEITEALR Unmodified 1914.9833 0.98331066 968 P0AFX0 hpf Ribosome hibernation promoting factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 3 2 1 1 1 2 2 2 2 2 2 45.598 44.046 2;3 1.7351E-39 21407 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 302.58 290.72 2482000000 391090000 362170000 318710000 0 730640 0 249950000 238980000 223880000 3446700 2274700 4300800 135070000 136060000 110470000 0 0 0 103550000 105940000 95414000 0 0 0 14894 968 14437 280755;280756;280757;280758;280759;280760;280761;280762;280763;280764;280765;280766;280767;280768;280769;280770;280771;280772;280773;280774;280775;280776;280777;280778;280779;280780;280781;280782;280783 172555;172556;172557;172558;172559;172560;172561;172562;172563;172564;172565;172566;172567;172568;172569;172570;172571 172566 17 MQLNSTEISELIK Unmodified 1504.7807 0.78069468 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 2 3 2 2 2 2 2 2 2 2 1 1 1 2 2 3 2 3 2 44.58 42.972 2;3 3.1098E-12 20042 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 185.08 175.72 7385100000 203930000 231000000 205790000 49455000 39272000 41591000 561100000 578880000 505090000 204420000 181830000 180540000 637480000 581700000 515360000 69884000 53587000 59710000 667550000 727890000 671220000 131130000 133650000 153030000 14895 645 14438 280784;280785;280786;280787;280788;280789;280790;280791;280792;280793;280794;280795;280796;280797;280798;280799;280800;280801;280802;280803;280804;280805;280806;280807;280808;280809;280810;280811;280812;280813;280814;280815;280816;280817;280818;280819;280820;280821;280822;280823;280824;280825;280826;280827;280828;280829;280830;280831 172572;172573;172574;172575;172576;172577;172578;172579;172580;172581;172582;172583;172584;172585;172586;172587;172588;172589;172590;172591;172592;172593;172594;172595;172596;172597;172598;172599 172597 28 MQLNSTEISELIK Oxidation (M) 1520.7756 0.7756093 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 1 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 2 1 40.566 38.404 2 0.018475 15400 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 57.019 49.891 21573000 0 0 0 0 419200 0 0 0 0 3795400 1907100 1846000 0 0 10549000 0 0 0 0 0 0 1668800 1387700 0 14896 645 14438 280832;280833;280834;280835;280836;280837;280838;280839 172600;172601 172600 350 2 MQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGK Unmodified 4481.2438 0.24378247 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 53.45 51.993 4 1.8856E-27 25900 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.24 134.74 159740000 7053200 12449000 0 0 0 0 22725000 20706000 19919000 0 0 0 11486000 21622000 12490000 0 0 0 13021000 18271000 0 0 0 0 14897 528 14439 280840;280841;280842;280843;280844;280845;280846;280847;280848;280849 172602;172603;172604 172602 3 MQNSALK Unmodified 790.40072 0.40072345 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.985 11.645 2 0.0049584 2873 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.64 29.623 1450800000 123900000 99373000 111880000 0 0 0 66179000 66823000 61603000 0 3407000 0 108800000 94656000 0 0 0 0 221540000 225160000 237160000 10601000 9563400 10173000 14898 937 14440 280850;280851;280852;280853;280854;280855;280856;280857;280858;280859;280860;280861;280862;280863;280864 172605;172606;172607;172608;172609 172609 5 MQPGITLR Unmodified 914.50077 0.50077184 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.918 22.338 2 0.0019749 9353 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.37 85.987 3832400000 520080000 560450000 481050000 4350600 4553000 3288000 201180000 183460000 181660000 0 0 0 207300000 175010000 184190000 0 0 0 375430000 385100000 365330000 0 0 0 14899 1444 14441 280865;280866;280867;280868;280869;280870;280871;280872;280873;280874;280875;280876;280877;280878;280879;280880 172610;172611;172612;172613;172614;172615;172616;172617;172618;172619;172620;172621;172622;172623 172619 14 MQPNDITFFQR Unmodified 1395.6605 0.66051996 1713 P67603 yqfB UPF0267 protein YqfB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 38.831 37.317 2 8.8341E-08 18140 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 174.02 159.82 425240000 76458000 61791000 65489000 0 0 0 0 0 0 0 0 0 34388000 35361000 31659000 0 0 0 41150000 40376000 38566000 0 0 0 14900 1713 14442 280881;280882;280883;280884;280885;280886;280887;280888;280889;280890 172624;172625;172626;172627;172628;172629;172630;172631;172632;172633 172625 10 MQQASEDEFNR Unmodified 1353.5619 0.56192813 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.008 15.688 2 1.4237E-19 5244 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 228.31 228.31 135500000 4205500 5653200 5861100 1794900 1612000 1440000 13987000 11541000 13752000 2528900 2183800 2679200 14766000 10471000 11594000 0 0 0 7707400 11877000 10565000 0 0 1281500 14901 1260 14443 280891;280892;280893;280894;280895;280896;280897;280898;280899;280900;280901;280902;280903;280904;280905;280906;280907;280908;280909 172634;172635;172636;172637;172638;172639;172640;172641;172642 172637 5 MQQASEDEFNRALNIAFDNR Unmodified 2368.0866 0.086606536 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.62 53.204 3 0.10741 19499 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 18.538 10.451 354690000 0 0 0 57210000 63228000 56758000 0 0 0 20287000 29522000 24060000 0 0 0 0 0 0 0 0 0 49433000 49250000 4942200 14902 1260 14444 280910;280911;280912;280913;280914;280915;280916;280917;280918 172643 172643 1 MQQLDSIISAK Unmodified 1232.6435 0.64347291 851 P0AEE1 dcrB Protein DcrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.31 30.936 2 1.221E-05 13978 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 144.77 129.62 908620000 28224000 34542000 24262000 5324000 3431100 5697400 73751000 82659000 77833000 29357000 25046000 26374000 64533000 61384000 55065000 12522000 7944600 8828800 86492000 83354000 82086000 9634200 8166500 12114000 14903 851 14445 280919;280920;280921;280922;280923;280924;280925;280926;280927;280928;280929;280930;280931;280932;280933;280934;280935;280936;280937;280938;280939;280940;280941;280942 172644;172645;172646;172647;172648;172649;172650;172651;172652;172653;172654;172655;172656;172657;172658;172659;172660 172659 14 MQQLQNIIETAFER Unmodified 1719.8614 0.86140461 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 2 2 2 2 2 2 2 2 52.526 51.289 2;3 2.8852E-26 24999 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 268.77 250.96 4173900000 565570000 557480000 543830000 1472100 650150 3235600 69695000 269180000 249870000 0 0 0 273580000 263320000 293290000 0 0 0 366020000 362370000 354320000 0 0 0 14904 512 14446 280943;280944;280945;280946;280947;280948;280949;280950;280951;280952;280953;280954;280955;280956;280957;280958;280959;280960;280961;280962;280963;280964;280965;280966;280967;280968;280969 172661;172662;172663;172664;172665;172666;172667;172668;172669;172670;172671;172672;172673;172674;172675;172676 172664 16 MQQLQNIIETAFER Oxidation (M) 1735.8563 0.85631924 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.005 48.59 2 9.6574E-06 23843 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.911 85.698 32440000 5890300 5677700 5157300 0 0 0 3512400 4616100 0 0 0 0 0 0 2104000 0 0 0 0 3035800 2446600 0 0 0 14905 512 14446 280970;280971;280972;280973;280974;280975;280976;280977 172677 172677 314 0 MQQNQSGFDLR Unmodified 1322.6037 0.60373336 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.59 21.648 2 1.0057E-19 8820 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 234.26 234.26 529150000 109740000 98239000 98554000 0 0 0 36370000 31203000 30410000 0 0 0 20178000 18082000 16734000 0 0 0 18447000 26919000 24271000 0 0 0 14906 1091 14447 280978;280979;280980;280981;280982;280983;280984;280985;280986;280987;280988;280989 172678;172679;172680;172681;172682;172683;172684;172685;172686;172687;172688;172689 172683 12 MQQQLGDQYSELAANEGYMK Unmodified 2303.0198 0.019832104 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 37.564 35.672 2;3 1.2561E-14 17298 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 197.19 192.28 277620000 10546000 0 5404300 5531800 5468300 5188300 19994000 26040000 22839000 16110000 12691000 13815000 14593000 15662000 14725000 0 0 0 24690000 19685000 20776000 8911000 7151800 7797700 14907 819 14448 280990;280991;280992;280993;280994;280995;280996;280997;280998;280999;281000;281001;281002;281003;281004;281005;281006;281007;281008;281009;281010;281011;281012;281013;281014;281015;281016;281017;281018;281019;281020;281021;281022;281023;281024;281025;281026;281027;281028 172690;172691;172692;172693;172694;172695;172696;172697;172698;172699;172700;172701;172702 172696 11 MQSDEGEINPVDILR Unmodified 1714.8196 0.81959938 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.195 42.68 2 5.4316E-27 20100 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 233.32 227.22 919610000 101530000 94192000 75815000 0 0 0 53060000 65054000 65186000 0 0 0 74214000 62512000 67257000 0 0 0 93559000 85546000 81693000 0 0 0 14908 1215 14449 281029;281030;281031;281032;281033;281034;281035;281036;281037;281038;281039;281040 172703;172704;172705;172706;172707;172708;172709;172710;172711;172712;172713 172711 11 MQSFDADIPK Unmodified 1150.5329 0.53285983 109 P05194 aroD 3-dehydroquinate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.748 27.501 2 0.00060717 12208 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 92.051 90.791 221850000 33945000 30518000 26213000 0 0 0 16020000 21136000 13833000 0 0 0 13337000 13065000 14575000 0 0 0 13511000 13414000 12286000 0 0 0 14909 109 14450 281041;281042;281043;281044;281045;281046;281047;281048;281049;281050;281051;281052 172714;172715;172716;172717 172717 4 MQSLALAPVGNLDSYIR Unmodified 1846.9611 0.96111866 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 1 1 1 50.343 49.875 2;3 9.2228E-19 18261 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 187.98 174.32 248990000 0 0 0 0 0 0 0 0 3391400 0 0 0 0 0 0 73658000 72646000 87711000 3572500 4741000 3265700 0 0 0 14910 1004 14451 281053;281054;281055;281056;281057;281058;281059;281060;281061;281062 172718;172719;172720;172721;172722;172723;172724 172720 7 MQSVTPTSQYLK Unmodified 1381.6912 0.69115139 1698 P64612 zapE Cell division protein ZapE yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.802 23.776 2 0.0012141 10316 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 74.533 65.15 89468000 14006000 3033800 11942000 370700 0 0 6417700 4896100 6479900 1417100 1380200 1092400 3344800 5054400 0 378320 0 331880 9385600 7576900 11780000 580540 0 0 14911 1698 14452 281063;281064;281065;281066;281067;281068;281069;281070;281071;281072;281073;281074;281075;281076;281077;281078;281079;281080 172725;172726;172727;172728;172729;172730 172730 3 MQTEHVILLNAQGVPTGTLEK Unmodified 2278.1991 0.1991171 1955 Q46822 idi Isopentenyl-diphosphate Delta-isomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.307 34.646 3 3.1005E-07 16522 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.816 89.686 160690000 29624000 30734000 22151000 0 0 0 15429000 11831000 15773000 4922800 0 0 5731300 5715700 5784400 0 0 0 0 6351800 6647000 0 0 0 14912 1955 14453 281081;281082;281083;281084;281085;281086;281087;281088;281089;281090;281091;281092 172731;172732;172733;172734 172733 2 MQTFQADLAIVGAGGAGLR Unmodified 1874.9673 0.96726667 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 3 3 2 3 1 2 1 2 2 2 49.257 47.779 2;3 4.2465E-29 19320 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 278.84 268.23 284850000 2440400 0 0 0 0 0 29596000 27419000 35475000 40434000 45934000 44318000 10880000 12195000 7953100 0 0 0 8768500 10595000 8837400 0 0 0 14913 25 14454 281093;281094;281095;281096;281097;281098;281099;281100;281101;281102;281103;281104;281105;281106;281107;281108;281109;281110;281111;281112;281113;281114;281115;281116;281117;281118 172735;172736;172737;172738;172739;172740;172741;172742;172743;172744;172745;172746;172747;172748 172735 14 MQTLIYQR Unmodified 1051.5485 0.54845032 773 P0AD70 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 23.769 23.044 2 0.0031357 7048 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 94.662 86.752 31748000 0 0 0 0 0 0 0 0 0 1172300 0 1280800 0 0 0 4729500 3395800 2903100 5387000 5224400 6385800 0 1269200 0 14914 773 14455 281119;281120;281121;281122;281123;281124;281125;281126;281127 172749;172750;172751 172751 3 MQTPHILIVEDELVTR Unmodified 1893.003 0.002983473 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 42.836 40.684 3 2.383E-09 14374 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 132.59 131.44 27438000 0 0 0 5284600 6346900 5532100 0 0 0 3353400 3414200 3506600 0 0 0 0 0 0 0 0 0 0 0 0 14915 546 14456 281128;281129;281130;281131;281132;281133 172752;172753;172754 172752 3 MQTQKPTLELLTCEGAYR Unmodified 2138.05 0.05001002 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 34.097 32.792 2;3 9.7071E-10 15641 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.85 115.41 218810000 74012000 79205000 63605000 0 1984400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14916 46 14457 281134;281135;281136;281137;281138;281139 172755;172756;172757;172758 172755 4 MQTQMQTQQIQQK Unmodified 1619.776 0.77596042 818 P0ADX7 yhhA Uncharacterized protein YhhA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.543 15.253 2 5.747E-40 4974 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 273.44 267.21 223630000 53055000 47804000 55085000 271480 474370 521340 16328000 16641000 13699000 517480 789090 0 4637900 3485200 4624000 0 0 0 0 2437600 3265500 0 0 0 14917 818 14458 281140;281141;281142;281143;281144;281145;281146;281147;281148;281149;281150;281151;281152;281153;281154;281155 172759;172760;172761;172762;172763;172764;172765;172766 172763 8 MQTQVLFEHPLNEK Unmodified 1712.8556 0.85559095 1443 P36680 zapD Cell division protein ZapD yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 28.84 27.738 3 0.0074471 12842 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 53.038 48.134 76281000 24974000 24669000 20123000 0 458120 0 0 0 0 0 0 0 0 3311100 2745200 0 0 0 0 0 0 0 0 0 14918 1443 14459 281156;281157;281158;281159;281160;281161 172767;172768 172767 2 MQTVIFGR Unmodified 950.50077 0.50077184 1722 P68688 grxA Glutaredoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.623 27.375 2 0.0001056 12583 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 160.03 145.36 504890000 34864000 33769000 32792000 0 0 0 37806000 33761000 40921000 0 0 0 41972000 46816000 41478000 0 0 0 52945000 57876000 49894000 0 0 0 14919 1722 14460 281162;281163;281164;281165;281166;281167;281168;281169;281170;281171;281172;281173 172769;172770;172771;172772;172773;172774;172775;172776;172777;172778 172772 10 MQVFIMR Unmodified 923.47211 0.47211425 1865 P76502 sixA Phosphohistidine phosphatase SixA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 33.91 32.493 2 8.7693E-08 15495 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 154.29 117.63 60165000 0 10036000 8008800 0 0 0 4475100 0 4735500 0 0 0 5615100 4453600 4162900 0 0 0 4873700 6531300 7272200 0 0 0 14920 1865 14461 281174;281175;281176;281177;281178;281179;281180;281181;281182;281183;281184 172779;172780;172781;172782;172783;172784;172785 172780 7 MQVILLDK Unmodified 958.55214 0.55213871 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 33.898 32.404 1;2 0.00092392 15424 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.39 96.729 6167800000 842130000 734890000 651330000 34869000 30037000 32016000 254810000 253450000 241280000 34175000 32128000 35529000 332740000 360540000 357520000 67706000 48345000 48048000 577940000 558290000 502130000 39051000 47730000 51088000 14921 364 14462 281185;281186;281187;281188;281189;281190;281191;281192;281193;281194;281195;281196;281197;281198;281199;281200;281201;281202;281203;281204;281205;281206;281207;281208;281209;281210;281211;281212;281213;281214;281215;281216;281217;281218;281219;281220;281221;281222;281223;281224;281225;281226;281227;281228;281229;281230;281231 172786;172787;172788;172789;172790;172791;172792;172793;172794;172795;172796;172797;172798;172799;172800;172801;172802;172803;172804;172805;172806;172807 172803 20 MQVLHVCSEMFPLLK Unmodified 1830.9195 0.91945354 282 P0A6U8 glgA Glycogen synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 48.106 46.513 3 3.6933E-06 23019 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.82 73.216 60557000 5629800 0 4483400 0 0 0 16711000 16034000 17700000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14922 282 14463 281232;281233;281234;281235;281236 172808;172809 172809 2 MQVSVETTQGLGR Unmodified 1404.7031 0.70311306 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 1 1 1 1 1 1 2 2 1 2 2 1 1 26.005 24.889 2 5.6963E-24 10464 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 266.24 253.15 2415900000 125110000 120870000 91392000 9637200 8136200 0 193380000 192640000 183200000 21181000 17899000 19428000 244560000 202170000 198720000 10973000 6663200 9346300 250240000 244350000 225460000 15100000 12774000 12684000 14923 396 14464 281237;281238;281239;281240;281241;281242;281243;281244;281245;281246;281247;281248;281249;281250;281251;281252;281253;281254;281255;281256;281257;281258;281259;281260;281261;281262;281263;281264;281265;281266;281267;281268;281269;281270 172810;172811;172812;172813;172814;172815;172816;172817;172818;172819;172820;172821;172822;172823;172824;172825;172826;172827 172825 12 MQVSVETTQGLGR Oxidation (M) 1420.698 0.69802768 396 P0A850 tig Trigger factor yes yes 0 1 0 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 20.358 20.63 2 0.00029072 7448 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 85.958 73.382 19201000 0 0 0 0 0 0 6895400 5491600 1957000 0 0 0 0 2465600 0 0 0 0 0 0 2391200 0 0 0 14924 396 14464 281271;281272;281273;281274;281275;281276 172828;172829 172829 182 2 MQYNPLGK Unmodified 949.46914 0.46913736 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 21.942 22.016 2 0.0031836 8679 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 94.262 83.286 252480000 70679000 63815000 51946000 0 0 0 0 38353000 0 0 0 0 13079000 0 0 0 0 0 14610000 0 0 0 0 0 14925 1934 14465 281277;281278;281279;281280;281281;281282;281283 172830;172831;172832;172833;172834;172835;172836 172835 6 MQYVKPELVPEDLAFLQYTGGTTGVAK Unmodified 2954.5099 0.50994613 1734 P69451 fadD Long-chain-fatty-acid--CoA ligase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 51.73 50.451 3 2.2696E-07 24743 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 96.466 90.305 130780000 32607000 32535000 22562000 2256700 0 1509900 0 9722800 9262200 0 0 0 0 0 0 0 0 0 0 0 14141000 0 6185200 0 14926 1734 14466 281284;281285;281286;281287;281288;281289;281290;281291;281292 172837;172838 172837 2 MRHYEIVFMVHPDQSEQVPGMIER Unmodified 2927.3881 0.38807363 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 1 2 2 2 37.467 35.888 4;5 0.00010183 12687 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 79.445 76.403 88974000 0 0 0 13570000 9969100 12046000 0 0 0 0 4066400 9423400 0 0 0 0 7985600 4061600 0 0 0 8608400 8923300 10320000 14927 66 14467 281293;281294;281295;281296;281297;281298;281299;281300;281301;281302;281303;281304;281305;281306;281307;281308;281309 172839;172840;172841;172842;172843;172844;172845;172846;172847 172844 9 MRLEFSIYR Unmodified 1213.6278 0.62776327 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 34.321 32.337 3 1.5114E-05 12351 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 135.71 100.96 52533000 0 0 0 6170400 6427100 4600500 0 0 0 6098900 4249500 4277200 0 0 0 0 0 0 0 0 0 11702000 6144100 2864100 14928 150 14468 281310;281311;281312;281313;281314;281315;281316;281317;281318 172848;172849;172850;172851;172852;172853;172854 172851 7 MRPNQPLTVK Unmodified 1182.6543 0.65431237 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By MS/MS 1 13.836 14.043 3 0.12308 3580 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 28.708 20.488 6618800 0 0 0 0 0 0 0 0 0 0 0 6618800 0 0 0 0 0 0 0 0 0 0 0 0 14929 1877 14469 281319 172855 172855 1 MRPSLDIEQVATGEHWYGQQAVEK Unmodified 2771.3337 0.3337131 977 P0AG14 sohB Probable protease SohB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 1 1 2 1 2 2 2 2 2 2 1 1 2 2 2 2 36.96 35.101 3;4 2.0781E-10 14183 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 127.83 126.88 301220000 14851000 0 0 5774500 6708600 651340 7069500 40341000 8199200 21581000 20433000 16899000 27791000 35055000 28388000 0 0 3366200 7712500 30664000 0 8131400 10512000 7087100 14930 977 14470 281320;281321;281322;281323;281324;281325;281326;281327;281328;281329;281330;281331;281332;281333;281334;281335;281336;281337;281338;281339;281340;281341;281342;281343;281344;281345;281346;281347;281348;281349;281350;281351 172856;172857;172858;172859;172860 172856 5 MRQLFVNTLQEK Unmodified 1505.8024 0.80243317 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By matching 1 2 1 5.1284 6.2321 3 0.15048 1050 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 23.226 17.742 10613000 0 0 0 2419600 6172000 2020900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14931 31 14471 281352;281353;281354;281355 172861;172862 172861 2 MSADLLIVPFIDK Unmodified 1460.7949 0.79488818 584 P0AAB8 uspD Universal stress protein D yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.904 53.448 2 5.154E-07 26525 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.16 142.67 1057000000 76357000 82240000 72060000 9347600 8846300 7817400 170690000 156980000 166540000 15113000 12615000 10983000 51212000 54909000 46664000 0 0 0 36712000 36387000 36154000 3521300 1814600 0 14932 584 14472 281356;281357;281358;281359;281360;281361;281362;281363;281364;281365;281366;281367;281368;281369;281370;281371;281372;281373;281374;281375 172863;172864;172865;172866;172867;172868;172869;172870;172871;172872;172873;172874 172866 12 MSDEPSYSPPVDIGGVMVGGTVSR Unmodified 2436.1301 0.13011083 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 47.642 46.24 2 5.931E-15 22715 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 189.81 188.82 79482000 13400000 16230000 12588000 0 0 0 9160200 9223400 0 0 0 0 0 4859600 2059900 0 0 0 3829900 4197400 3934300 0 0 0 14933 1817 14473 281376;281377;281378;281379;281380;281381;281382;281383;281384;281385 172875;172876;172877;172878 172876 3 MSDNDTIVAQATPPGR Unmodified 1671.7886 0.7886336 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 24.866 24.033 2 2.6149E-13 10658 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 158.42 154.4 28996000 4405800 0 0 0 0 0 0 0 0 0 0 0 3816200 6634300 2890300 0 0 0 0 6411500 4838000 0 0 0 14934 1256 14474 281386;281387;281388;281389;281390;281391 172879 172879 1 MSDSQTLVVK Unmodified 1106.5642 0.56415996 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 18.351 18.839 2 0.059815 6598 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 46.462 39.311 5746300 0 0 0 0 0 0 0 0 0 0 0 553650 0 2155500 0 0 0 0 0 3037200 0 0 0 0 14935 328 14475 281392;281393;281394 172880 172880 1 MSEIAIVLDEAER Unmodified 1474.7337 0.73374448 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 2 3 2 3 2 1 1 1 1 1 2 3 3 1 2 2 1 2 3 47.315 45.848 2;3 3.8354E-12 21275 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 180.88 172.95 670090000 49838000 45750000 45363000 16065000 15461000 14787000 37906000 37752000 34788000 4234000 3464200 3110600 62104000 60950000 66519000 0 0 0 51039000 48486000 46163000 6905100 9642600 9756600 14936 1172 14476 281395;281396;281397;281398;281399;281400;281401;281402;281403;281404;281405;281406;281407;281408;281409;281410;281411;281412;281413;281414;281415;281416;281417;281418;281419;281420;281421;281422;281423;281424;281425;281426;281427;281428;281429;281430;281431;281432;281433;281434;281435 172881;172882;172883;172884;172885;172886;172887;172888;172889;172890;172891;172892;172893;172894;172895;172896;172897 172896 16 MSELNEK Unmodified 849.39022 0.39021834 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 1 13.298 14.202 1;2 0.056131 4371 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 68.485 27.912 948400000 0 0 0 0 0 0 73688000 69840000 73308000 0 0 0 99823000 87429000 61655000 0 0 0 167960000 180860000 133840000 0 0 0 14937 212 14477 281436;281437;281438;281439;281440;281441;281442;281443;281444;281445;281446;281447;281448;281449 172898;172899;172900;172901;172902;172903;172904;172905;172906 172903 9 MSELQYGK Unmodified 954.44807 0.44806757 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.991 16.635 2 0.000847 5699 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 120.65 112.93 1094900000 134330000 142110000 115940000 0 0 0 122030000 129080000 129180000 3620000 3769000 4509000 57879000 51585000 43834000 0 0 0 53676000 51815000 51548000 0 0 0 14938 1662 14478 281450;281451;281452;281453;281454;281455;281456;281457;281458;281459;281460;281461;281462;281463;281464 172907;172908;172909 172909 3 MSGECAPNVSVSVSTSHTTISGGGSR Unmodified 2564.1595 0.15951348 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 2 24.162 23.18 2;3 9.7472E-31 7874 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 187.79 187.75 662010000 0 0 0 8793700 9898000 9306600 0 0 0 204170000 152330000 156380000 0 0 0 6205900 3348700 2223500 0 0 0 34670000 37798000 36888000 + 14939 11 14479 281465;281466;281467;281468;281469;281470;281471;281472;281473;281474;281475;281476;281477;281478;281479;281480 172910;172911;172912;172913;172914;172915;172916;172917;172918;172919;172920;172921;172922;172923;172924;172925;172926;172927;172928 172925 19 MSGECAPNVSVSVSTSHTTISGGGSR Oxidation (M) 2580.1544 0.1544281 11 CON__P04264 yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 2 1 2 23.523 22.548 3 2.8452E-07 7430 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 105.03 105.01 32159000 0 0 0 0 994450 0 0 0 0 11413000 5836000 8568600 0 0 0 0 0 0 0 0 0 0 1393900 3953600 + 14940 11 14479 281481;281482;281483;281484;281485;281486;281487;281488;281489 172929;172930;172931;172932 172931 1 4 MSGGETDTRK Unmodified 1080.487 0.48697227 716 P0ACB4 hemG Protoporphyrinogen IX dehydrogenase [menaquinone] yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 10.075 10.302 2;3 0.078726 1805 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 45.368 40.677 6146900 0 0 0 0 0 0 0 0 0 0 5253100 0 0 0 0 0 0 0 0 0 0 0 0 893800 14941 716 14480 281490;281491;281492 172933;172934 172934 2 MSGIDSYLLR Unmodified 1153.5801 0.58014438 764 P0AD12 yeeZ Protein YeeZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.312 37.638 2 1.8698E-06 18332 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.26 130.89 469120000 47336000 43674000 44790000 0 0 0 45926000 42711000 48318000 0 0 0 29379000 27771000 29320000 0 0 0 36883000 35824000 37190000 0 0 0 14942 764 14481 281493;281494;281495;281496;281497;281498;281499;281500;281501;281502;281503;281504 172935;172936;172937;172938;172939;172940;172941 172937 4 MSGINFVANPLVNIHLQGR Unmodified 2079.1048 0.1047632 1257 P25524 codA Cytosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 48.597 47.358 3 1.2791E-06 23236 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.344 87.917 73239000 26601000 23774000 22863000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14943 1257 14482 281505;281506;281507 172942;172943;172944 172942 3 MSGINIDNR Unmodified 1018.4866 0.48657834 84 P03960 kdpB Potassium-transporting ATPase B chain yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 19.854 20.296 2 0.0074035 5862 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 67.494 62.759 10297000 0 0 3973700 1852600 1486800 1498800 0 0 1484600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14944 84 14483 281508;281509;281510;281511;281512 172945 172945 1 MSHLDEVIAR Unmodified 1169.5863 0.58629239 1670 P64455 ydcY Uncharacterized protein YdcY yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 1 2 19.49 19.969 2;3 0.0010072 7757 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 65.627 62.488 281690000 17990000 19363000 18425000 503110 534640 478720 22288000 19710000 21796000 0 0 0 29537000 22838000 24722000 0 0 0 29006000 21857000 32640000 0 0 0 14945 1670 14484 281513;281514;281515;281516;281517;281518;281519;281520;281521;281522;281523;281524;281525;281526;281527;281528;281529;281530;281531;281532;281533;281534;281535;281536;281537;281538 172946;172947;172948;172949;172950;172951;172952 172947 7 MSIAIMAGVLEAR Unmodified 1360.7207 0.72067738 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.541 50.293 2 0.00074619 24534 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 76.927 74.075 107150000 12353000 16968000 15001000 946700 1138300 751460 4559200 4658300 4264800 0 0 0 4889600 6003100 6630100 0 0 0 9437900 11157000 8390900 0 0 0 14946 34 14485 281539;281540;281541;281542;281543;281544;281545;281546;281547;281548;281549;281550;281551;281552;281553 172953;172954 172953 0 MSIGEAK Oxidation (M) 750.35819 0.35818993 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 3 2 2 12.617 12.579 1;2 0.0035052 3332 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 110.14 57.038 184590000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66252000 58498000 59835000 0 0 0 0 0 0 14947 36 14486 281554;281555;281556;281557;281558;281559;281560 172955;172956;172957;172958;172959;172960;172961 172957 22 7 MSIGEAK Unmodified 734.36328 0.36327531 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.239 13.598 2 0.023142 4050 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.975 38.169 6231500000 83756000 84103000 0 3132500 0 2642600 0 0 0 16297000 16122000 15581000 0 0 0 1782900000 1999100000 2194900000 0 0 0 13173000 9764700 10012000 14948 36 14486 281561;281562;281563;281564;281565;281566;281567;281568;281569;281570;281571;281572;281573 172962;172963;172964;172965;172966 172966 5 MSLAPFIER Unmodified 1062.5532 0.55320134 1680 P64506 yebY Uncharacterized protein YebY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 41.587 39.906 2 1.6621E-05 19513 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.68 153.74 883780000 75201000 72063000 69374000 290350 0 0 58054000 49835000 52057000 0 0 0 86979000 77263000 83251000 0 0 0 85265000 81943000 92201000 0 0 0 14949 1680 14487 281574;281575;281576;281577;281578;281579;281580;281581;281582;281583;281584;281585;281586 172967;172968;172969;172970;172971;172972;172973;172974;172975;172976;172977;172978 172973 10 MSLHQNSFSEVLALADIR Unmodified 2030.0255 0.025509829 1161 P19930 hyaD Hydrogenase 1 maturation protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 50.681 49.029 3 4.23E-10 24322 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.97 119.02 26206000 0 0 0 0 0 0 8275400 9401600 8529200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14950 1161 14488 281587;281588;281589 172979;172980;172981 172979 3 MSMGHEVVGHWFNEEVK Unmodified 2014.903 0.90295185 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 3 3 3 2 2 2 2 2 2 3 3 3 31.223 29.732 2;3;4 5.5272E-20 11125 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 240.11 236.98 3982500000 0 23627000 23000000 0 0 0 20308000 17795000 14240000 419670000 250310000 283960000 16720000 17570000 19096000 100170000 88906000 83561000 0 0 0 790090000 952420000 861060000 14951 422 14489 281590;281591;281592;281593;281594;281595;281596;281597;281598;281599;281600;281601;281602;281603;281604;281605;281606;281607;281608;281609;281610;281611;281612;281613;281614;281615;281616;281617;281618;281619;281620;281621;281622;281623;281624;281625;281626;281627;281628 172982;172983;172984;172985;172986;172987;172988;172989;172990;172991;172992;172993;172994;172995;172996;172997;172998;172999;173000;173001;173002;173003;173004;173005 173002 24 MSMGHEVVGHWFNEEVK Oxidation (M) 2030.8979 0.89786647 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 1 0 By matching By matching By MS/MS By matching By MS/MS 1 2 2 1 2 30.197 28.257 3 3.1383E-05 11068 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 84.41 82.791 48080000 0 0 0 0 0 0 0 0 0 3575500 5647400 0 0 0 0 0 0 0 0 0 0 16184000 6705500 15968000 14952 422 14489 281629;281630;281631;281632;281633;281634;281635;281636 173006;173007;173008;173009 173009 206;207 4 MSMGHEVVGHWFNEEVKENLALLDEVEQAAHALK Oxidation (M) 3875.8611 0.86109362 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 4 5 6 6 4 5 53.507 52.627 3;4;5;6 1.3359E-43 20934 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 205.37 204.21 2864300000 0 0 0 0 0 0 0 0 0 245920000 278300000 189200000 0 0 0 54883000 114340000 146870000 0 0 0 733920000 539150000 561700000 14953 422 14490 281637;281638;281639;281640;281641;281642;281643;281644;281645;281646;281647;281648;281649;281650;281651;281652;281653;281654;281655;281656;281657;281658;281659;281660;281661;281662;281663;281664;281665;281666;281667;281668;281669;281670;281671;281672;281673;281674;281675;281676;281677 173010;173011;173012;173013;173014;173015;173016;173017;173018;173019;173020;173021;173022;173023;173024;173025;173026;173027;173028;173029;173030;173031;173032;173033;173034;173035;173036;173037;173038 173037 206;207 29 MSMGHEVVGHWFNEEVKENLALLDEVEQAAHALK Unmodified 3859.8662 0.866179 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 4 4 4 1 1 1 4 4 3 2 1 1 5 5 5 54.147 53.022 3;4;5;6 1.2834E-98 21134 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 310.2 308.99 32868000000 18621000 6315000 7719900 0 0 0 5222600 0 9453400 2478800000 2848800000 2792100000 4984900 4099600 6470700 1155400000 1463500000 2566500000 13678000 6984400 5016100 6365500000 6043700000 7064900000 14954 422 14490 281678;281679;281680;281681;281682;281683;281684;281685;281686;281687;281688;281689;281690;281691;281692;281693;281694;281695;281696;281697;281698;281699;281700;281701;281702;281703;281704;281705;281706;281707;281708;281709;281710;281711;281712;281713;281714;281715;281716;281717;281718;281719;281720;281721;281722;281723;281724;281725;281726;281727;281728 173039;173040;173041;173042;173043;173044;173045;173046;173047;173048;173049;173050;173051;173052;173053;173054;173055;173056;173057;173058;173059;173060;173061;173062;173063;173064;173065;173066;173067;173068;173069;173070;173071;173072;173073 173072 35 MSMGHEVVGHWFNEEVKENLALLDEVEQAAHALK 2 Oxidation (M) 3891.856 0.85600824 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 2 1 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 3 3 3 53.594 52.409 4;5;6 8.8145E-11 20859 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 107.52 107.51 366920000 0 0 0 5152500 0 0 0 0 0 16495000 18866000 19739000 0 0 0 1184500 14761000 0 0 0 0 90042000 105810000 94877000 14955 422 14490 281729;281730;281731;281732;281733;281734;281735;281736;281737;281738;281739;281740;281741;281742;281743;281744;281745;281746;281747 173074;173075;173076;173077;173078;173079;173080;173081;173082;173083;173084 173079 206;207 11 MSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSER Unmodified 4289.0634 0.063375258 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 1 3 3 3 53.306 52.225 4;5;6 8.1152E-87 20826 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 286.02 284.89 3099300000 0 0 0 0 0 0 0 0 0 255000000 123630000 143500000 0 0 0 65211000 92688000 78862000 0 0 0 752440000 814900000 773020000 14956 422 14491 281748;281749;281750;281751;281752;281753;281754;281755;281756;281757;281758;281759;281760;281761;281762;281763;281764;281765;281766;281767;281768 173085;173086;173087;173088;173089;173090;173091;173092;173093;173094;173095;173096;173097;173098;173099;173100;173101;173102 173096 18 MSMGHEVVGHWFNEEVKENLALLDEVEQAAHALKGSER Oxidation (M) 4305.0583 0.058289881 422 P0A8E5 yacL UPF0231 protein YacL yes yes 0 1 2 By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 53.194 51.74 5;6 4.9322E-18 20557 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 129.63 129.33 112970000 0 0 0 0 0 0 0 0 0 10814000 0 0 0 0 0 0 0 0 0 0 0 23770000 48351000 30034000 14957 422 14491 281769;281770;281771;281772;281773;281774 173103;173104;173105;173106 173106 206;207 4 MSNLDAMDITAPYTPGVLR Unmodified 2064.002 0.001997195 1368 P31455 yidR Uncharacterized protein YidR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 50.518 49.129 2 2.4315E-17 24283 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 164.88 151.9 67791000 10371000 7994000 10019000 0 0 0 6344000 5696400 0 0 0 0 5079700 6389600 5102000 0 0 0 5371300 0 5424000 0 0 0 14958 1368 14492 281775;281776;281777;281778;281779;281780;281781;281782;281783;281784 173107;173108 173107 2 MSNLVTSVVK Unmodified 1076.59 0.58998078 342 P0A7G2 rbfA Ribosome-binding factor A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.282 26.891 2 0.00048805 12210 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.815 91.396 423730000 55559000 60213000 49584000 1838400 2300300 1437100 29777000 34976000 30113000 12664000 11154000 13033000 14315000 13684000 13476000 0 0 0 25807000 27446000 23882000 2469400 0 0 14959 342 14493 281785;281786;281787;281788;281789;281790;281791;281792;281793;281794;281795;281796;281797;281798;281799;281800;281801;281802;281803 173109;173110;173111;173112;173113;173114;173115;173116 173114 7 MSNWPYPR Unmodified 1049.4753 0.47528537 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.281 25.936 2 0.00025974 11716 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 149.4 146.7 96506000 0 0 0 0 0 0 4999700 3251100 0 2212700 1697600 1324300 9475700 9326700 9554700 0 0 5137000 16911000 15106000 14314000 1804500 1390000 0 14960 1065 14494 281804;281805;281806;281807;281808;281809;281810;281811;281812;281813;281814;281815;281816;281817 173117;173118;173119;173120;173121;173122 173120 5 MSPEAFEESVDAIR Unmodified 1579.7188 0.7188227 761 P0AD05 yecA Uncharacterized protein YecA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.898 40.199 2 5.1569E-08 19586 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.79 140.03 111030000 15694000 13555000 13090000 0 0 0 10918000 8563400 8987100 0 0 0 8399400 5871200 6672400 0 0 0 6417600 7202700 5660600 0 0 0 14961 761 14495 281818;281819;281820;281821;281822;281823;281824;281825;281826;281827;281828;281829 173123;173124;173125;173126 173123 4 MSPTTVTDPMQQK Unmodified 1462.6796 0.67960042 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.984 23.025 2 1.7991E-05 9533 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.39 110.39 236940000 13248000 9856300 9013300 1684100 1620500 2000400 12393000 12171000 14062000 4455500 3824100 4304200 21012000 20831000 18340000 1457300 0 0 29689000 20442000 24477000 4244700 3744100 4071800 14962 1267 14496 281830;281831;281832;281833;281834;281835;281836;281837;281838;281839;281840;281841;281842;281843;281844;281845;281846;281847;281848;281849;281850;281851 173127;173128;173129;173130;173131;173132;173133;173134;173135;173136;173137 173137 11 MSTEQLNAWIK Unmodified 1319.6544 0.65437195 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.136 36.463 2 2.664E-06 17545 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 155.07 155.07 494290000 9791900 8425300 8108300 0 0 0 61508000 58200000 57586000 0 0 0 63527000 58582000 57095000 0 0 0 37926000 37289000 36254000 0 0 0 14963 1947 14497 281852;281853;281854;281855;281856;281857;281858;281859;281860;281861;281862;281863 173138;173139;173140;173141;173142;173143;173144;173145;173146 173143 9 MSTGLALDSEGK Unmodified 1207.5755 0.57545293 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.789 22.977 2 2.4249E-06 10190 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 142 137.03 807810000 49280000 53689000 47513000 768940 594360 0 39257000 31465000 37024000 2120900 2629500 3205800 66539000 76511000 64689000 1473400 0 1611700 99079000 108460000 106710000 5107000 4762900 5317800 14964 1819 14498 281864;281865;281866;281867;281868;281869;281870;281871;281872;281873;281874;281875;281876;281877;281878;281879;281880;281881;281882;281883;281884;281885 173147;173148;173149;173150;173151;173152;173153;173154;173155;173156;173157;173158;173159;173160;173161 173149 15 MSTGLALDSEGKR Unmodified 1363.6766 0.67656396 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 17.434 17.878 2;3 2.5658E-07 6067 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 117.2 109.16 1628500000 69523000 76509000 67855000 6594200 5318300 5994500 93288000 95165000 85220000 13875000 13116000 11633000 107540000 105510000 110150000 10774000 11453000 8770500 216570000 210000000 197430000 37006000 33493000 35669000 14965 1819 14499 281886;281887;281888;281889;281890;281891;281892;281893;281894;281895;281896;281897;281898;281899;281900;281901;281902;281903;281904;281905;281906;281907;281908;281909;281910;281911;281912;281913;281914;281915;281916;281917;281918;281919;281920;281921;281922;281923;281924;281925;281926;281927;281928;281929;281930;281931;281932;281933 173162;173163;173164;173165;173166;173167;173168;173169;173170;173171;173172;173173;173174;173175;173176;173177;173178;173179;173180;173181;173182;173183;173184;173185;173186;173187;173188;173189;173190;173191 173191 29 MSTIEER Unmodified 864.40112 0.40111738 226 P0A6A8 acpP Acyl carrier protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.31 12.901 2 0.0022589 3416 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 115.46 107.52 12588000000 529680000 464910000 493650000 2488500 0 3284800 716870000 755590000 700820000 12701000 7830400 10157000 1510200000 1324900000 1191100000 8615500 5670300 6425600 1597300000 1599100000 1600700000 15984000 13714000 16371000 14966 226 14500 281934;281935;281936;281937;281938;281939;281940;281941;281942;281943;281944;281945;281946;281947;281948;281949;281950;281951;281952;281953;281954;281955;281956 173192;173193;173194;173195;173196;173197;173198;173199;173200;173201;173202;173203;173204;173205 173204 13 MSTIEER Oxidation (M) 880.39603 0.396032 226 P0A6A8 acpP Acyl carrier protein yes yes 0 1 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 10.731 11.559 1;2 0.064068 2828 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 53.891 53.891 177740000 3732700 0 0 0 0 0 9333800 9245900 0 0 0 0 12766000 14072000 0 0 0 0 0 16578000 112010000 0 0 0 14967 226 14500 281957;281958;281959;281960;281961;281962;281963;281964 173206;173207;173208 173207 0 MSVEADINGLRR Unmodified 1359.6929 0.69288272 6 CON__P02533;CON__Q9QWL7;CON__Q6IFX2 no no 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 25.328 24.064 3 0.023685 8763 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 35.737 28.012 17928000 0 0 0 0 969020 0 0 0 0 4879400 5036600 4095200 0 0 0 664560 0 0 0 0 0 0 2283200 0 + 14968 6 14501 281965;281966;281967;281968;281969;281970 173209 173209 0 MSVHDQEMVIGR Unmodified 1400.6541 0.65405438 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 20.623 21.025 2;3 5.9799E-31 7833 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 263.11 255.46 1965900000 139480000 137400000 104500000 237790 0 0 178110000 149620000 143450000 0 0 0 197650000 185160000 173990000 0 0 0 190840000 194120000 171380000 0 0 0 14969 1868 14502 281971;281972;281973;281974;281975;281976;281977;281978;281979;281980;281981;281982;281983;281984;281985;281986;281987;281988;281989;281990;281991;281992;281993;281994;281995 173210;173211;173212;173213;173214;173215;173216;173217;173218;173219;173220;173221;173222;173223;173224;173225;173226;173227;173228;173229;173230;173231;173232;173233 173232 24 MSVMLQSLNNIR Unmodified 1404.7217 0.72174001 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 38.045 38.167 2 0.016604 14004 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 60.434 56.279 9773000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4502800 2506000 2764300 0 0 0 0 0 0 14970 729 14503 281996;281997;281998 173234;173235 173234 0 MSVVPVADVLQGR Unmodified 1369.7388 0.73877028 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS 1 43.607 42.316 2 0.00028314 19707 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 85.958 76.271 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14971 444 14504 281999 173236 173236 1 MSVVVAENTEHHQLVCK Unmodified 1979.9557 0.9557157 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 2 1 3 3 3 2 1 1 2 2 3 1 1 17.681 18.236 2;3;4 1.6395E-24 6353 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 236.28 228.36 997120000 0 0 0 1380700 1929700 1198500 6730700 18083000 15991000 2815800 0 0 255670000 231330000 236210000 23188000 8229900 10512000 53912000 55851000 58035000 6478700 0 9567200 14972 647 14505 282000;282001;282002;282003;282004;282005;282006;282007;282008;282009;282010;282011;282012;282013;282014;282015;282016;282017;282018;282019;282020;282021;282022;282023;282024;282025;282026;282027;282028;282029;282030 173237;173238;173239;173240;173241;173242;173243;173244;173245;173246;173247;173248;173249;173250;173251;173252;173253;173254 173251 18 MSWTQSETGSAITWK Unmodified 1711.7876 0.78757097 1911 P77522 sufB FeS cluster assembly protein SufB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.864 36.19 2 3.803E-06 17566 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.67 100.67 128240000 14463000 11327000 12505000 0 0 0 14117000 13094000 15207000 0 0 0 6525600 6998300 6775400 0 0 0 9023800 8541200 9658300 0 0 0 14973 1911 14506 282031;282032;282033;282034;282035;282036;282037;282038;282039;282040;282041;282042 173255;173256;173257;173258;173259;173260;173261;173262;173263 173260 4 MSYVEGLLSSNQK Unmodified 1454.7075 0.70752973 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 1 1 2 2 2 1 1 2 36.587 34.939 2;3 1.9543E-09 16109 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 176.48 174.97 3343600000 204810000 182420000 172540000 914350 911280 912180 270080000 262690000 277110000 16479000 16985000 15872000 347500000 362460000 369160000 1753500 1682400 0 240470000 269040000 324640000 1410100 1402400 2326100 14974 539 14507 282043;282044;282045;282046;282047;282048;282049;282050;282051;282052;282053;282054;282055;282056;282057;282058;282059;282060;282061;282062;282063;282064;282065;282066;282067;282068;282069;282070;282071;282072;282073;282074;282075;282076;282077;282078;282079;282080 173264;173265;173266;173267;173268;173269;173270;173271;173272;173273;173274;173275;173276;173277;173278;173279;173280;173281;173282;173283;173284;173285;173286 173283 23 MSYVEGLLSSNQK Oxidation (M) 1470.7024 0.70244436 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 32.57 31.169 2 0.0063444 15257 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 62.166 59.079 29990000 0 0 0 0 0 0 5262200 5636300 0 0 0 0 3047200 3801000 2164500 0 0 0 5740000 4339000 0 0 0 0 14975 539 14507 282081;282082;282083;282084;282085;282086;282087 173287 173287 321 0 MTAHTPCFR Unmodified 1119.4954 0.49536889 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 13.619 14.428 2;3 2.1526E-11 4463 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 215.1 211.16 3122000000 241460000 233270000 187640000 0 0 824250 338150000 315140000 294540000 0 0 0 262470000 250310000 215780000 0 585250 800440 279030000 260430000 241620000 0 0 0 14976 441 14508 282088;282089;282090;282091;282092;282093;282094;282095;282096;282097;282098;282099;282100;282101;282102;282103;282104;282105;282106;282107;282108;282109;282110;282111;282112;282113;282114 173288;173289;173290;173291;173292;173293;173294;173295;173296;173297;173298;173299;173300;173301;173302;173303;173304;173305;173306;173307;173308;173309;173310;173311 173299 24 MTANLQPGEYDMTCGLLTNPK Unmodified 2353.0752 0.075238493 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.385 42.87 2 3.1231E-21 20896 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.82 155.69 98865000 13972000 14593000 10050000 0 0 0 4768900 4481500 4761700 0 0 0 6954300 6558000 5973100 0 0 0 9675200 10069000 7008100 0 0 0 14977 623 14509 282115;282116;282117;282118;282119;282120;282121;282122;282123;282124;282125;282126 173312;173313;173314;173315;173316;173317 173313 6 MTATAQQLEYLK Unmodified 1395.7068 0.70680145 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 29.897 28.52 2 3.853E-08 12813 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 188.04 177.52 405990000 4575400 0 5505400 0 0 0 9910200 12270000 9433200 0 0 0 40362000 44593000 40564000 0 0 0 86104000 74588000 78084000 0 0 0 14978 1736 14510 282127;282128;282129;282130;282131;282132;282133;282134;282135;282136;282137;282138 173318;173319;173320;173321;173322;173323;173324;173325 173324 7 MTDEAGEDAK Oxidation (M) 1081.4234 0.42336896 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 7.7731 8.6246 2 0.0012739 2421 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 87.308 87.308 87456000 3010500 2558900 2867500 0 0 0 12384000 9132600 7093200 0 0 0 8074700 8601500 6569800 0 0 0 7499100 10524000 9139800 0 0 0 14979 325 14511 282139;282140;282141;282142;282143;282144;282145;282146;282147;282148;282149;282150;282151;282152;282153;282154;282155;282156;282157;282158;282159 173326;173327;173328;173329;173330;173331;173332;173333;173334 173328 150 9 MTDEAGEDAK Unmodified 1065.4285 0.42845434 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.498 11.314 2 1.8423E-06 2606 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 160.56 160.56 2398700000 139730000 140690000 139950000 0 0 0 192690000 203530000 189260000 0 0 0 244440000 254510000 224280000 0 0 0 253000000 174030000 242610000 0 0 0 14980 325 14511 282160;282161;282162;282163;282164;282165;282166;282167;282168;282169;282170;282171 173335;173336;173337;173338;173339;173340;173341;173342;173343;173344;173345 173336 11 MTDEAGEDAKLVAVPHSK Unmodified 1896.9251 0.92512708 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.554 19.145 3 0.00010781 6794 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 62.203 60.552 97827000 7476300 3706400 6257000 0 0 0 10429000 9874500 8839200 0 0 0 9339700 6362300 5640300 0 0 0 10057000 11000000 8845800 0 0 0 14981 325 14512 282172;282173;282174;282175;282176;282177;282178;282179;282180;282181;282182;282183 173346;173347;173348;173349;173350;173351;173352;173353 173353 8 MTDFGLPLPHMGWNR Unmodified 1770.8334 0.83341572 1624 P60595 hisH Imidazole glycerol phosphate synthase subunit HisH yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.552 47.25 3 0.007143 22032 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 48.704 44.602 65924000 9469700 9389600 8507400 0 0 0 4240800 0 6079500 0 0 0 4798600 3134700 3570900 0 0 0 4803700 7260400 4669000 0 0 0 14982 1624 14513 282184;282185;282186;282187;282188;282189;282190;282191;282192;282193;282194 173354 173354 1 MTDLDLAGK Oxidation (M) 978.4692 0.46919694 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 3 2 19.423 19.941 2 0.00068166 7700 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.44 70.887 662110000 55668000 46543000 44677000 0 0 0 103960000 106180000 91439000 0 0 0 32706000 14819000 27119000 0 0 0 49669000 44358000 44976000 0 0 0 14983 321 14514 282195;282196;282197;282198;282199;282200;282201;282202;282203;282204;282205;282206;282207;282208;282209;282210;282211;282212;282213;282214;282215;282216;282217;282218 173355;173356;173357;173358;173359;173360;173361;173362;173363;173364;173365;173366;173367 173361 146 11 MTDLDLAGK Unmodified 962.47428 0.47428232 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.185 23.257 2 0.00063648 10426 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 105.14 71.493 15880000000 1387800000 1209500000 1086700000 1048100 1069300 1252100 2036400000 1942600000 1783400000 0 0 1220500 983580000 1099500000 1009400000 0 0 0 1078700000 1198800000 1059100000 0 0 0 14984 321 14514 282219;282220;282221;282222;282223;282224;282225;282226;282227;282228;282229;282230;282231;282232;282233;282234 173368;173369;173370;173371;173372;173373;173374;173375;173376;173377;173378;173379 173369 12 MTDLDLAGKR Unmodified 1118.5754 0.57539335 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 17.613 18.093 2;3 3.6025E-09 6689 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 228.39 181.33 2811600000 200960000 227620000 194050000 6873800 4869900 5971100 399040000 365170000 331680000 5918300 5554800 5502100 135500000 154250000 131510000 2901400 1774000 1599200 183740000 220290000 222250000 1277100 1423300 1842400 14985 321 14515 282235;282236;282237;282238;282239;282240;282241;282242;282243;282244;282245;282246;282247;282248;282249;282250;282251;282252;282253;282254;282255;282256;282257;282258;282259;282260;282261;282262;282263;282264;282265;282266;282267;282268;282269;282270;282271;282272;282273;282274;282275;282276;282277 173380;173381;173382;173383;173384;173385;173386;173387;173388;173389;173390;173391;173392;173393;173394;173395;173396;173397;173398;173399;173400;173401;173402;173403 173384 24 MTDLDLAGKR Oxidation (M) 1134.5703 0.57030797 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 1 1 By MS/MS 1 14.294 14.998 2 0.0021203 4894 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.827 51.09 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14986 321 14515 282278 173404 173404 146 1 MTDLFSSPDHTLDALGLR Unmodified 1987.9673 0.96732625 409 P0A890 tusA Sulfurtransferase TusA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 50.188 48.961 3 2.8476E-17 23828 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 157.91 155.31 81779000 0 0 0 0 0 0 0 4692400 3852600 0 0 0 11110000 7421000 9579800 0 0 959520 12467000 15349000 16348000 0 0 0 14987 409 14516 282279;282280;282281;282282;282283;282284;282285;282286;282287 173405;173406;173407;173408;173409 173406 5 MTDLIQRPR Unmodified 1128.6074 0.60736218 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 16.574 17.348 3 0.0073379 6186 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 57.859 49.933 86896000 0 0 1984900 0 0 0 6631200 5239700 4723400 0 0 0 9792400 9371600 9349700 0 0 0 14682000 12674000 12448000 0 0 0 14988 715 14517 282288;282289;282290;282291;282292;282293;282294;282295;282296;282297 173410;173411;173412 173410 0 MTDVTIK Unmodified 806.42079 0.42079019 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 15.118 15.936 2 0.025794 5399 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 71.296 50.311 188870000 2034500 0 1769200 0 0 0 8198300 8909500 6046200 0 0 0 28233000 22507000 30331000 0 0 0 29866000 27089000 23891000 0 0 0 14989 297 14518 282298;282299;282300;282301;282302;282303;282304;282305;282306;282307;282308 173413;173414;173415;173416 173413 4 MTEEIAGFQTSPK Unmodified 1437.681 0.68098063 602 P0AAN1 hybE Hydrogenase-2 operon protein HybE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 28.501 27.056 2 6.7453E-05 12529 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 94.791 88.756 80564000 0 0 0 0 0 0 7861900 0 0 2949300 0 3896200 9238700 8621700 5861800 0 0 0 13680000 13971000 14484000 0 0 0 14990 602 14519 282309;282310;282311;282312;282313;282314;282315;282316;282317 173417;173418 173417 1 MTELPIDENTPR Unmodified 1414.6762 0.67622961 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 29.283 28.02 2 3.0358E-05 12940 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.89 111.13 52798000 0 5063800 0 0 0 0 4212800 3602300 0 0 0 0 4403600 4588600 3994100 0 0 0 6861000 9907400 10164000 0 0 0 14991 1728 14520 282318;282319;282320;282321;282322;282323;282324;282325;282326 173419;173420;173421;173422;173423 173421 4 MTENIHK Unmodified 871.42219 0.42218717 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 10.337 11.173 2 0.0072259 2430 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 92.191 80.629 959210000 58836000 57399000 61730000 0 0 0 0 0 0 0 0 0 125490000 135340000 132640000 0 0 0 122870000 148980000 115930000 0 0 0 14992 86 14521 282327;282328;282329;282330;282331;282332;282333;282334;282335 173424;173425;173426;173427;173428;173429 173427 6 MTESFAQLFEESLK Unmodified 1658.7862 0.78617399 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 54.124 52.814 2;3 2.2409E-35 25674 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 265.61 257.14 4125400000 474070000 466420000 478300000 0 6507100 0 245220000 187840000 132800000 12708000 6020800 7850500 359680000 337340000 310650000 3847000 4262600 2855400 354910000 367460000 334040000 7164700 9105600 16298000 14993 990 14522 282336;282337;282338;282339;282340;282341;282342;282343;282344;282345;282346;282347;282348;282349;282350;282351;282352;282353;282354;282355;282356;282357;282358;282359;282360;282361;282362;282363;282364;282365;282366;282367;282368;282369 173430;173431;173432;173433;173434;173435;173436;173437;173438;173439;173440;173441;173442;173443;173444;173445;173446;173447;173448;173449;173450;173451;173452;173453;173454;173455;173456 173442 27 MTESFAQLFEESLK Oxidation (M) 1674.7811 0.78108861 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 1 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 53.249 51.84 2 2.4903E-05 24589 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.911 94.057 167750000 27966000 24921000 23187000 0 0 0 13460000 0 0 0 0 0 16958000 19081000 18015000 0 0 0 24157000 0 0 0 0 0 14994 990 14522 282370;282371;282372;282373;282374;282375;282376;282377 173457;173458 173458 452 2 MTESFAQLFEESLKEIETR Unmodified 2287.1042 0.10421366 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.055 53.591 3 1.2944E-17 26374 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 163.18 159.79 642010000 76140000 66040000 61520000 2120200 0 1617200 32783000 23982000 31984000 4614800 3085900 0 49266000 42110000 45977000 0 0 0 72236000 66357000 62175000 0 0 0 14995 990 14523 282378;282379;282380;282381;282382;282383;282384;282385;282386;282387;282388;282389;282390;282391;282392;282393 173459;173460;173461;173462;173463;173464;173465;173466 173460 8 MTESFAQLFEESLKEIETRPGSIVR Unmodified 2896.4641 0.46405857 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 54.4 53.313 3;4 8.2961E-72 21134 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 283.48 278.03 1506300000 0 0 0 45509000 50675000 42166000 0 7924100 0 38087000 52857000 99612000 0 3708600 4015600 202370000 361150000 314240000 0 0 0 93574000 98330000 92055000 14996 990 14524 282394;282395;282396;282397;282398;282399;282400;282401;282402;282403;282404;282405;282406;282407;282408;282409;282410;282411;282412;282413;282414;282415;282416;282417;282418;282419 173467;173468;173469;173470;173471;173472;173473;173474;173475;173476;173477;173478;173479;173480;173481;173482 173468 16 MTETGGNFDK Oxidation (M) 1114.4601 0.46008882 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.476 12.309 2 0.00014256 3220 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 129.38 128.59 419130000 25184000 28134000 23268000 0 0 0 45335000 35521000 42437000 0 0 0 35318000 33491000 35801000 0 0 0 38892000 42607000 33142000 0 0 0 14997 271 14525 282420;282421;282422;282423;282424;282425;282426;282427;282428;282429;282430;282431 173483;173484;173485;173486;173487;173488;173489;173490 173484 131 8 MTETGGNFDK Unmodified 1098.4652 0.4651742 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.664 13.505 2 1.324E-06 3963 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.16 162.75 5016500000 558580000 546080000 492450000 0 0 0 350430000 354370000 288610000 0 0 0 461830000 481580000 481610000 0 0 0 331680000 334320000 334930000 0 0 0 14998 271 14525 282432;282433;282434;282435;282436;282437;282438;282439;282440;282441;282442;282443 173491;173492;173493;173494;173495;173496;173497;173498;173499;173500;173501;173502 173499 9 MTGDNPDAPR Unmodified 1072.4608 0.46075752 1436 P34209 ydcF Protein YdcF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.318 12.121 2 0.0099258 3141 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 64.654 62.788 154770000 40376000 30721000 29077000 0 0 0 10685000 7364300 8048100 0 0 0 6140300 0 5697800 0 0 0 6566900 0 10092000 0 0 0 14999 1436 14526 282444;282445;282446;282447;282448;282449;282450;282451;282452;282453 173503 173503 1 MTGDNTLIHSHGINR Unmodified 1664.8053 0.80528672 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 14.559 15.19 3 0.0043606 5022 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 57.328 52.802 17198000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4753800 7114000 4414800 0 915560 0 15000 1739 14527 282454;282455;282456;282457 173504;173505 173504 2 MTGLESYDVK Unmodified 1141.5325 0.53252548 1928;710 P77695;P0AC92 gnsB;gnsA Protein GnsB;Protein GnsA no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.997 23.914 2 0.00029157 10599 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.5 123.56 2278900000 266640000 293830000 242850000 0 0 0 214960000 201560000 201900000 604690 0 560260 126500000 102200000 92141000 0 0 0 182920000 180470000 171810000 0 0 0 15001 1928;710 14528 282458;282459;282460;282461;282462;282463;282464;282465;282466;282467;282468;282469;282470;282471 173506;173507;173508;173509;173510;173511;173512 173510 7 MTGNGNEWMPIGK Unmodified 1433.6432 0.64315534 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 32.458 31.259 2 3.0756E-07 14256 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 120.09 118.6 45682000 0 0 0 0 0 0 0 0 0 0 0 0 0 9420300 11531000 0 0 0 0 12039000 12691000 0 0 0 15002 785 14529 282472;282473;282474;282475;282476;282477 173513;173514;173515;173516;173517 173515 5 MTHLPHWWQNGVIYQIYPK Unmodified 2410.2045 0.20447725 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 43.303 41.696 4 1.6447E-06 19645 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 89.261 87.218 189390000 0 0 0 0 0 0 15429000 11227000 16399000 0 0 0 20876000 23231000 13616000 0 0 0 32126000 29558000 25479000 0 0 1451900 15003 1324 14530 282478;282479;282480;282481;282482;282483;282484;282485;282486;282487 173518;173519;173520;173521;173522 173520 5 MTIGEIIAEPLR Unmodified 1341.7326 0.73262227 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 48.64 47.275 2;3 1.2108E-11 16967 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 216.45 216.45 801130000 119360000 108510000 107000000 38906000 33643000 41839000 28036000 29952000 26387000 28378000 24072000 8929400 27466000 26866000 20360000 0 0 0 34597000 33379000 33019000 9543100 10003000 10885000 15004 1935 14531 282488;282489;282490;282491;282492;282493;282494;282495;282496;282497;282498;282499;282500;282501;282502;282503;282504;282505;282506;282507;282508;282509;282510;282511;282512;282513;282514;282515;282516;282517 173523;173524;173525;173526;173527;173528;173529;173530;173531;173532;173533;173534;173535;173536;173537;173538;173539;173540;173541;173542;173543;173544 173535 22 MTILVGNSGDR Unmodified 1161.5812 0.58120701 1613 P56258 wecF TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase yes yes 0 0 0 By matching By MS/MS 1 1 25.082 24.205 2 0.043446 10736 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 53.493 37.878 11557000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6155600 5401200 0 0 0 15005 1613 14532 282518;282519 173545 173545 0 MTISELLQYCMAK Unmodified 1586.7507 0.75065688 911 P0AF50 yjbR Uncharacterized protein YjbR yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 52.464 51.189 2 2.6806E-17 25381 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 205.83 205.57 181930000 45818000 40539000 39840000 0 0 0 33244000 0 5788800 0 0 0 9771200 6930400 0 0 0 0 0 0 0 0 0 0 15006 911 14533 282520;282521;282522;282523;282524;282525;282526 173546;173547 173546 2 MTISELLQYCMAKPGAEQSVHNDWK Unmodified 2935.3667 0.36666949 911 P0AF50 yjbR Uncharacterized protein YjbR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 45.004 43.385 4 0.11079 15383 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 27.203 15.787 10789000 0 0 0 3832500 3386800 3569600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15007 911 14534 282527;282528;282529 173548;173549;173550 173550 3 MTISVEGK Unmodified 863.44225 0.44225391 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 1 1 1 1 2 2 1 1 24.187 23.782 2 0.00077509 5453 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 123.69 105.84 705290000 0 0 0 11015000 36286000 39282000 88913000 92631000 87547000 61815000 58431000 55955000 0 0 29133000 0 0 0 43857000 0 46280000 34635000 9494000 10015000 15008 1944 14535 282530;282531;282532;282533;282534;282535;282536;282537;282538;282539;282540;282541;282542;282543;282544;282545;282546;282547;282548;282549;282550;282551 173551;173552;173553;173554;173555;173556;173557;173558;173559;173560;173561;173562;173563;173564;173565 173558 15 MTKPIVFSGAQPSGELTIGNYMGALR Unmodified 2737.3931 0.39314223 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.854 46.439 3 2.1212E-10 22620 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 118.54 109.45 172610000 4152500 5444400 6035400 0 0 0 7441600 9042500 8397700 0 0 0 22148000 22594000 19310000 0 0 0 26183000 21167000 20694000 0 0 0 15009 57 14536 282552;282553;282554;282555;282556;282557;282558;282559;282560;282561;282562;282563 173566;173567;173568;173569;173570;173571 173567 6 MTLCNMAIEMGAK Unmodified 1468.6546 0.654648 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.546 38.094 2 5.0811E-06 18471 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.01 116.66 142720000 44599000 38496000 35134000 0 0 0 0 3004400 4359400 0 0 0 2977700 2752900 3521600 0 781010 0 0 3668700 3425700 0 0 0 15010 225 14537 282564;282565;282566;282567;282568;282569;282570;282571;282572;282573;282574 173572;173573;173574 173573 3 MTLDDFR Unmodified 896.4062 0.40620276 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 31.009 29.564 2 0.00037797 11440 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 155.73 132.7 1053900000 0 0 0 14489000 13812000 15839000 0 0 0 288400000 237070000 229770000 0 0 0 10271000 8026400 7619800 0 0 0 75244000 74844000 78518000 + 15011 16 14538 282575;282576;282577;282578;282579;282580;282581;282582;282583;282584;282585;282586;282587 173575;173576;173577;173578;173579;173580;173581;173582;173583;173584;173585 173577 11 MTLDDFR Oxidation (M) 912.40112 0.40111738 16 CON__P35527 yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 2 2 1 2 1 2 25.539 24.503 2 0.020244 6745 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 81.297 77.444 42703000 0 0 0 830300 1571600 0 0 0 0 7670600 8570000 7445000 0 0 0 1426600 0 0 0 0 0 6800900 4151800 4235700 + 15012 16 14538 282588;282589;282590;282591;282592;282593;282594;282595;282596;282597;282598;282599;282600;282601;282602 173586;173587;173588;173589;173590;173591;173592 173592 5 7 MTLEAIR Unmodified 832.44767 0.44767364 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 24.244 23.186 2 0.0021148 8244 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 118.01 83.823 322070000 31971000 0 24286000 1685400 1392700 3025100 27286000 24958000 29457000 7827900 7514300 6239100 25858000 27437000 0 0 0 0 38020000 0 42872000 8309400 7362100 6575000 15013 1197 14539 282603;282604;282605;282606;282607;282608;282609;282610;282611;282612;282613;282614;282615;282616;282617;282618;282619;282620;282621 173593;173594;173595;173596;173597;173598;173599;173600;173601;173602 173594 10 MTLEQALEFIDDDELVEVTPTSIR Unmodified 2763.3524 0.35244244 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 55.823 54.391 3 6.353E-10 26018 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 112.23 109.45 757140000 0 59569000 69173000 4002400 0 0 0 76487 0 0 0 0 101780000 110540000 73404000 0 0 0 110500000 115720000 112380000 0 0 0 15014 1388 14540 282622;282623;282624;282625;282626;282627;282628;282629;282630;282631 173603;173604;173605;173606 173605 4 MTLGIRPEHIALSSQAEGGVPMVMDTLEILGADNLAHGR Unmodified 4099.0653 0.065289514 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1 1 2 2 2 1 1 2 53.964 52.614 4;5 3.9523E-30 25761 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 177.69 175.06 588180000 0 0 0 0 0 0 0 34786000 12979000 0 11022000 0 15646000 17879000 14242000 11539000 0 0 146290000 136430000 131700000 18078000 12703000 24885000 15015 1064 14541 282632;282633;282634;282635;282636;282637;282638;282639;282640;282641;282642;282643;282644;282645;282646;282647;282648;282649 173607;173608;173609;173610;173611 173608 5 MTLPSGHPK Oxidation (M) 982.4906 0.49060109 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 11.376 11.298 2 0.004981 2285 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 79.906 75.172 18765000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10072000 3688000 5004600 0 0 0 0 0 0 15016 1247 14542 282650;282651;282652 173612;173613;173614 173612 518 3 MTLPSGHPK Unmodified 966.49569 0.49568646 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.587 13.228 2 0.0031935 3123 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 82.452 75.628 644020000 14155000 18798000 16020000 0 0 0 0 0 0 0 0 0 32772000 32482000 25043000 236260000 90602000 84128000 33381000 31999000 28379000 0 0 0 15017 1247 14542 282653;282654;282655;282656;282657;282658;282659;282660;282661;282662;282663;282664 173615;173616;173617 173616 3 MTLQQQIIK Unmodified 1101.6216 0.62161526 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 26.458 25.405 1;2 6.5425E-05 11225 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.04 132.25 2019700000 250920000 220540000 189170000 0 0 362650 184120000 206970000 216270000 0 0 0 125760000 111220000 110680000 0 0 0 126460000 132140000 145090000 0 0 0 15018 1154 14543 282665;282666;282667;282668;282669;282670;282671;282672;282673;282674;282675;282676;282677;282678;282679;282680;282681;282682;282683;282684;282685;282686;282687;282688;282689 173618;173619;173620;173621;173622;173623;173624;173625;173626;173627;173628 173626 5 MTLTEIVAK Unmodified 1004.5576 0.55761802 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 2 2 2 2 1 1 2 2 3 1 1 1 2 1 1 31.381 30.04 2 0.00099453 14162 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 95.909 84.26 2250200000 165430000 166290000 142600000 0 0 0 345950000 320460000 332530000 4264900 4654700 0 240090000 247380000 261300000 0 1090200 1446900 0 5063900 6421500 0 2445700 2818600 15019 1437 14544 282690;282691;282692;282693;282694;282695;282696;282697;282698;282699;282700;282701;282702;282703;282704;282705;282706;282707;282708;282709;282710;282711;282712;282713;282714;282715 173629;173630;173631;173632;173633 173631 4 MTMNITSK Acetyl (Protein N-term);2 Oxidation (M) 998.44127 0.44126763 768 P0AD49 raiA Ribosome-associated inhibitor A yes yes 1 2 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 11.97 12.484 2 0.00094695 2578 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 117.93 94.915 113720000 0 0 0 24606000 0 27445000 0 0 0 1519700 0 0 0 0 0 0 0 0 0 0 0 18952000 19392000 21802000 15020 768 14545 282716;282717;282718;282719;282720;282721 173634;173635;173636 173635 380;381 3 MTNIGTFR Unmodified 938.46439 0.46438634 611 P0AAT4 ybdG Miniconductance mechanosensitive channel YbdG yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 21.769 21.829 2 0.0052395 8580 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 102.41 60.011 23013000 0 0 0 0 0 0 0 0 4111800 0 0 0 5552700 4781200 0 0 0 0 4548700 0 4018400 0 0 0 15021 611 14546 282722;282723;282724;282725;282726 173637;173638 173637 0 MTNLFVR Unmodified 879.46366 0.46365805 1750 P69828 gatA Galactitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.52 27.083 2 0.00014163 12390 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 170.43 119.4 711200000 34025000 38073000 33270000 663610 0 0 54138000 67439000 55051000 1212900 1446800 1043600 68238000 62985000 61623000 0 0 0 78207000 80024000 73760000 0 0 0 15022 1750 14547 282727;282728;282729;282730;282731;282732;282733;282734;282735;282736;282737;282738;282739;282740;282741;282742 173639;173640;173641;173642;173643;173644;173645;173646 173643 6 MTNLNYQQTHFVMSAPDIR Unmodified 2265.0671 0.067057068 269 P0A6P7 engB Probable GTP-binding protein EngB yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 37.095 35.03 3 0.0037365 13519 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 51.819 48.379 8794400 0 0 0 0 0 0 0 0 0 0 0 2960000 0 0 0 0 0 0 0 0 0 0 2334100 3500300 15023 269 14548 282743;282744;282745 173647 173647 1 MTNNDTTLQLSSVLNR Unmodified 1805.8942 0.89416131 1751 P69829 ptsN Nitrogen regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.802 38.128 2 1.1632E-30 18985 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 307.59 292.62 349190000 31639000 20279000 22682000 0 0 0 23148000 25279000 25096000 0 0 0 28065000 27237000 26453000 0 0 0 40747000 42958000 35605000 0 0 0 15024 1751 14549 282746;282747;282748;282749;282750;282751;282752;282753;282754;282755;282756;282757 173648;173649;173650;173651;173652;173653;173654;173655 173648 8 MTNNPPSAQIKPGEYGFPLK Unmodified 2188.0987 0.098674772 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 33.514 32.114 2;3 5.5748E-18 15102 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206.2 200.92 873790000 216610000 223120000 196240000 0 0 0 65254000 60565000 56944000 0 0 0 6192000 5484800 6881200 0 0 0 11274000 12144000 13083000 0 0 0 15025 1486 14550 282758;282759;282760;282761;282762;282763;282764;282765;282766;282767;282768;282769;282770;282771;282772 173656;173657;173658;173659;173660;173661;173662;173663;173664 173664 9 MTNPQFAGHPFGTTVTAETLR Unmodified 2275.1056 0.10555106 1014 P0AGF2 csdE Sulfur acceptor protein CsdE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 34.174 32.763 3 9.0693E-05 15518 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 75.224 74.696 129970000 7867600 7675300 5929600 0 0 0 7628400 0 9531100 0 0 0 12539000 9479200 13109000 0 0 0 20479000 20146000 15582000 0 0 0 15026 1014 14551 282773;282774;282775;282776;282777;282778;282779;282780;282781;282782;282783 173665;173666 173666 2 MTNTYMLPGK Unmodified 1154.5464 0.54640141 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.992 23.887 2 0.00011191 10440 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 129.38 124.08 367960000 34666000 44016000 29872000 0 0 0 30410000 23711000 32330000 4901100 0 519120 22188000 18680000 20734000 0 0 0 34066000 37549000 34315000 0 0 0 15027 1019 14552 282784;282785;282786;282787;282788;282789;282790;282791;282792;282793;282794;282795;282796;282797 173667;173668;173669;173670;173671;173672;173673;173674;173675 173671 8 MTPEHLPTEQYEAQLAEK Unmodified 2113.999 0.99902031 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.864 27.608 3 2.5687E-14 12723 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.8 118.27 314210000 35950000 28789000 22792000 0 0 0 18244000 17084000 19489000 0 0 0 19955000 22305000 19656000 0 0 0 34246000 38650000 37046000 0 0 0 15028 1203 14553 282798;282799;282800;282801;282802;282803;282804;282805;282806;282807;282808;282809 173676;173677;173678;173679;173680;173681;173682;173683;173684;173685;173686;173687 173682 12 MTPHPVEFELYYSV Unmodified 1710.7963 0.79634474 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.691 48.275 2 8.0465E-07 23784 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.62 131.51 1468700000 157150000 137810000 120980000 2761900 2226700 3105200 170240000 137420000 136690000 3001900 1801500 1785400 101780000 85075000 79263000 0 0 0 120920000 104440000 102200000 0 0 0 15029 508 14554 282810;282811;282812;282813;282814;282815;282816;282817;282818;282819;282820;282821;282822;282823;282824;282825;282826;282827 173688;173689;173690;173691;173692;173693;173694;173695;173696;173697;173698;173699;173700;173701;173702;173703;173704 173699 17 MTPITGGFANK Unmodified 1135.5696 0.56957969 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 24.667 23.765 2 4.292E-05 8438 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 130.75 122.53 119380000 0 0 0 0 0 0 0 0 0 17478000 16166000 18706000 0 0 0 5422300 2986600 4157900 0 0 0 17232000 18624000 18612000 15030 75 14555 282828;282829;282830;282831;282832;282833;282834;282835;282836 173705;173706;173707;173708;173709;173710 173707 6 MTPPGLDK Unmodified 857.43169 0.43168922 1098 P14900 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 17.165 17.84 2 0.084541 6152 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 52.482 49.794 106250000 7807700 9868000 8789800 0 0 0 12672000 8401900 11287000 0 0 0 8155100 0 8484200 0 0 0 9279000 10411000 11096000 0 0 0 15031 1098 14556 282837;282838;282839;282840;282841;282842;282843;282844;282845;282846;282847 173711;173712 173712 2 MTPPGLDKLPEAVER Unmodified 1651.8603 0.86034198 1098 P14900 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.073 31.633 3 0.0065104 14918 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 42.813 40.513 168540000 17217000 17303000 13352000 0 0 0 14465000 14592000 14460000 0 0 0 10034000 11691000 9381600 0 0 0 14371000 17821000 13847000 0 0 0 15032 1098 14557 282848;282849;282850;282851;282852;282853;282854;282855;282856;282857;282858;282859 173713;173714;173715;173716 173714 4 MTPTIELICGHR Unmodified 1426.7061 0.70608995 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 30.588 29.226 2;3 4.0197E-08 13604 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 159.28 157.86 1908200000 245760000 254080000 219190000 0 0 637410 119540000 102990000 118530000 0 0 0 151650000 166450000 166610000 0 0 0 116890000 118590000 127270000 0 0 0 15033 1136 14558 282860;282861;282862;282863;282864;282865;282866;282867;282868;282869;282870;282871;282872;282873;282874;282875;282876;282877;282878;282879;282880;282881;282882;282883;282884 173717;173718;173719;173720;173721;173722;173723;173724;173725;173726;173727;173728;173729;173730;173731;173732;173733;173734;173735;173736;173737;173738 173726 22 MTPVPDCGEK Unmodified 1132.4893 0.48928046 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.446 15.146 2 0.0032788 4990 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 73.985 49.83 641990000 148110000 124500000 115300000 0 463890 0 70994000 69760000 65783000 0 570130 755160 7294600 6570000 6047600 0 0 0 9001100 8614700 8223400 0 0 0 15034 995 14559 282885;282886;282887;282888;282889;282890;282891;282892;282893;282894;282895;282896;282897;282898;282899 173739;173740;173741;173742;173743;173744;173745;173746 173739 6 MTQDDAADK Unmodified 993.40732 0.40732497 1894 P77304 dtpA Dipeptide and tripeptide permease A yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 5.5584 6.4581 2 0.000772 1207 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.64 89.875 65761000 5907700 5987000 0 0 2260000 0 7700300 5204100 5322800 0 0 0 5883700 6021700 4737800 0 0 0 6135900 5998800 4600700 0 0 0 15035 1894 14560 282900;282901;282902;282903;282904;282905;282906;282907;282908;282909;282910;282911;282912 173747;173748;173749;173750;173751 173747 5 MTQDELKK Unmodified 991.50083 0.50083142 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.635 11.457 2 0.00082708 2684 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.57 108.01 1562000000 155250000 170850000 0 0 0 0 163900000 150240000 164800000 0 0 0 124140000 121570000 133150000 0 0 0 143070000 111930000 123050000 0 0 0 15036 382 14561 282913;282914;282915;282916;282917;282918;282919;282920;282921;282922;282923;282924 173752;173753;173754;173755;173756;173757;173758;173759;173760;173761;173762;173763 173754 12 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMK Unmodified 4460.2872 0.28722718 382 P0A7Z0 rpiA Ribose-5-phosphate isomerase A yes yes 0 0 2 By matching By MS/MS 1 1 42.294 39.567 5 0.15309 15835 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 6.3983 5.3829 38853000 0 0 0 0 0 0 0 0 0 15431000 23422000 0 0 0 0 0 0 0 0 0 0 0 0 0 15037 382 14562 282925;282926 173764 173764 1 MTQQPQAK Unmodified 930.4593 0.45930096 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 6.8564 7.715 2 0.0012605 1721 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.34 98.144 110150000 22280000 21574000 19777000 0 0 0 0 0 0 0 0 0 9622300 8474700 12758000 0 0 0 4780300 5335900 5545000 0 0 0 15038 94 14563 282927;282928;282929;282930;282931;282932;282933;282934;282935 173765;173766;173767;173768;173769;173770;173771;173772;173773;173774 173770 10 MTQTLSQLENSGAFIER Unmodified 1923.936 0.93602612 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 2 2 2 2 2 2 1 40.866 39.189 2;3 1.236E-49 19070 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 330.03 290.4 272860000 15675000 13964000 13882000 0 0 0 10250000 8117800 7061000 0 2089900 1629500 24747000 26587000 22718000 0 0 0 40089000 42588000 42028000 0 0 1436300 15039 1409 14564 282936;282937;282938;282939;282940;282941;282942;282943;282944;282945;282946;282947;282948;282949;282950;282951;282952;282953;282954;282955;282956;282957;282958;282959 173775;173776;173777;173778;173779;173780;173781;173782;173783;173784;173785 173778 11 MTSCNQQATAQALK Unmodified 1550.7181 0.71811119 955 P0AFM4 psiF Phosphate starvation-inducible protein PsiF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.515 14.38 2 5.6995E-45 4449 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 279.3 273 720210000 66339000 49232000 41408000 0 0 0 81077000 68700000 72550000 0 0 0 60122000 69863000 66113000 0 0 0 49272000 46371000 49166000 0 0 0 15040 955 14565 282960;282961;282962;282963;282964;282965;282966;282967;282968;282969;282970;282971 173786;173787;173788;173789;173790;173791;173792;173793;173794;173795;173796;173797 173788 12 MTSENPLLALR Unmodified 1243.6595 0.65945733 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 37.957 36.993 2 3.6296E-14 17918 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 207.95 202.17 87411000 24642000 19192000 22409000 0 0 0 0 0 3424000 0 0 0 0 0 0 2333800 1571800 2188200 0 0 11651000 0 0 0 15041 529 14566 282972;282973;282974;282975;282976;282977;282978;282979;282980;282981 173798;173799;173800;173801;173802;173803 173800 6 MTSVGSQDTTGPMTR Unmodified 1567.697 0.6970414 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 17.759 18.328 2;3 4.0339E-82 6434 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 349.55 308.83 5173600000 619120000 673810000 559590000 3416400 6079700 4670200 291040000 308320000 282230000 2648100 3405900 2281800 299210000 275460000 260540000 0 0 0 550670000 517310000 499590000 5185000 4254400 4789100 15042 1444 14567 282982;282983;282984;282985;282986;282987;282988;282989;282990;282991;282992;282993;282994;282995;282996;282997;282998;282999;283000;283001;283002;283003;283004;283005;283006;283007;283008;283009;283010;283011;283012;283013;283014 173804;173805;173806;173807;173808;173809;173810;173811;173812;173813;173814;173815;173816;173817;173818;173819;173820;173821;173822;173823;173824;173825;173826;173827;173828 173826 25 MTSVGSQDTTGPMTR Oxidation (M) 1583.692 0.69195602 1444 P36683 acnB Aconitate hydratase B yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 1 1 14.09 14.898 2 3.1549E-06 4340 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.72 107.22 51535000 8284900 20639000 9036900 0 0 0 0 3254600 4123700 0 0 0 3231900 2963800 0 0 0 0 0 0 0 0 0 0 15043 1444 14567 283015;283016;283017;283018;283019;283020;283021;283022;283023 173829;173830;173831;173832;173833;173834 173832 550;551 4 MTTEELAECLGVAK Unmodified 1550.732 0.73202992 1291 P27238 yfeD Uncharacterized protein YfeD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 2 2 1 1 1 42.806 41.907 2;3 9.3664E-09 15011 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 155.11 129.88 61496000 4115900 3167700 2880000 0 0 0 0 0 2547900 0 0 0 3812500 1991200 2452800 9913200 9968400 10460000 3560800 3959600 2665100 0 0 0 15044 1291 14568 283024;283025;283026;283027;283028;283029;283030;283031;283032;283033;283034;283035;283036;283037;283038 173835;173836;173837;173838 173837 4 MTTNYIFVTGGVVSSLGK Unmodified 1872.9655 0.96553533 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 1 2 2 2 2 2 2 49.876 48.467 2;3 2.1058E-13 23430 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 177.38 175.06 599890000 17545000 21816000 16544000 0 0 0 60722000 38231000 53787000 1575900 0 0 68619000 54105000 44644000 0 0 0 83747000 76047000 62508000 0 0 0 15045 337 14569 283039;283040;283041;283042;283043;283044;283045;283046;283047;283048;283049;283050;283051;283052;283053;283054;283055;283056;283057;283058;283059;283060 173839;173840;173841;173842;173843;173844;173845;173846;173847;173848;173849;173850;173851;173852 173845 14 MTVEYYAPAR Unmodified 1199.5645 0.56449431 475 P0A8Z3 ybgC Acyl-CoA thioester hydrolase YbgC yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 25.37 24.358 2 2.4973E-05 10918 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 147.29 139.72 87072000 8016500 8676700 7320200 0 0 0 7146100 0 0 0 0 0 7031200 8453700 9152100 0 0 0 9461000 10630000 11185000 0 0 0 15046 475 14570 283061;283062;283063;283064;283065;283066;283067;283068;283069;283070 173853;173854;173855;173856;173857;173858;173859 173854 7 MTVQDYLLK Unmodified 1109.5791 0.57908174 1673 P64467 cnu OriC-binding nucleoid-associated protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.09 36.535 2 0.00012493 17766 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.12 116.61 269740000 28140000 21256000 21649000 0 220520 260710 20120000 24866000 29546000 0 0 0 19936000 24199000 18797000 0 0 480310 21381000 20088000 18801000 0 0 0 15047 1673 14571 283071;283072;283073;283074;283075;283076;283077;283078;283079;283080;283081;283082;283083;283084;283085 173860;173861;173862;173863;173864;173865;173866;173867 173862 8 MVAFSNYFFDTTQGHSQINGCTVR Unmodified 2779.2483 0.24826891 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 1 1 1 2 2 1 2 1 2 1 1 44.668 43.032 2;3 2.4645E-71 21072 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 358.12 354.34 2280900000 426930000 390860000 375950000 13060000 10838000 15211000 161870000 161480000 151380000 3978700 3137700 3867700 97713000 83210000 69883000 0 0 0 107080000 97852000 98307000 4425400 3819800 0 15048 397 14572 283086;283087;283088;283089;283090;283091;283092;283093;283094;283095;283096;283097;283098;283099;283100;283101;283102;283103;283104;283105;283106;283107;283108;283109;283110;283111;283112;283113;283114 173868;173869;173870;173871;173872;173873;173874;173875;173876;173877;173878;173879;173880;173881;173882;173883;173884;173885;173886;173887;173888 173883 21 MVAGLER Unmodified 774.40581 0.40580882 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.029 16.402 2 0.0017267 4497 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 124.89 102.99 368920000 0 0 0 1447200 1375900 2033000 0 0 0 21049000 20477000 19126000 0 0 0 9093300 4873500 6537400 101080000 98887000 0 28273000 26168000 28504000 15049 1064 14573 283115;283116;283117;283118;283119;283120;283121;283122;283123;283124;283125;283126;283127;283128;283129;283130 173889;173890;173891;173892;173893;173894;173895;173896;173897;173898 173894 10 MVALAAR Unmodified 730.41598 0.41597958 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 16.451 17.182 1;2 0.0016613 5713 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 126.05 42.817 1936200000 36259000 35760000 33832000 0 1049400 0 155590000 132730000 115120000 0 0 0 180480000 149440000 160840000 971700 0 811750 321910000 282140000 329270000 0 0 0 15050 1065 14574 283131;283132;283133;283134;283135;283136;283137;283138;283139;283140;283141;283142;283143;283144;283145;283146;283147;283148;283149;283150;283151;283152;283153;283154;283155;283156;283157 173899;173900;173901;173902 173902 3 MVAPVDGTIGK Unmodified 1086.5743 0.57433072 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 1 1 2 1 1 2 2 1 1 1 1 2 2 2 1 1 1 1 2 1 1 1 1 23.772 22.96 2 0.00011029 9518 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 117.89 104.31 24088000000 2100400000 2262400000 2061100000 14722000 21047000 24746000 2369200000 2147700000 2197600000 15017000 15111000 14607000 2042500000 1777900000 1597100000 14753000 9412500 8704100 1791800000 1835200000 1738900000 10058000 7736200 10224000 15051 1741 14575 283158;283159;283160;283161;283162;283163;283164;283165;283166;283167;283168;283169;283170;283171;283172;283173;283174;283175;283176;283177;283178;283179;283180;283181;283182;283183;283184;283185;283186;283187;283188;283189;283190 173903;173904;173905;173906;173907;173908;173909;173910;173911;173912;173913;173914;173915;173916;173917;173918;173919;173920;173921;173922;173923;173924;173925;173926;173927;173928;173929;173930;173931;173932;173933;173934;173935;173936;173937;173938;173939 173938 36 MVAPVDGTIGK Oxidation (M) 1102.5692 0.56924534 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1 2 1 2 2 1 1 20.715 20.681 2 0.0013893 6841 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.645 65.869 220000000 0 33396000 22852000 1066600 0 0 40280000 38488000 5071900 0 0 0 22047000 11125000 24550000 0 0 0 7016000 6332800 7777200 0 0 0 15052 1741 14575 283191;283192;283193;283194;283195;283196;283197;283198;283199;283200;283201;283202;283203;283204;283205;283206 173940;173941;173942;173943 173940 599 3 MVASVAK Unmodified 704.3891 0.38909613 1907 P77454 glsA1 Glutaminase 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.574 12.4 1 0.01382 3359 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.61 74.025 242900000 38896000 32942000 35660000 0 0 0 38156000 32351000 31728000 0 0 0 7794500 7628800 7802600 0 0 0 4943900 0 5001100 0 0 0 15053 1907 14576 283207;283208;283209;283210;283211;283212;283213;283214;283215;283216;283217 173944 173944 0 MVDFHGWMMPLHYGSQIDEHHAVR Unmodified 2892.3047 0.30467835 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 3 3 3 3 3 2 3 3 3 37.843 36.157 4;5;6 6.5285E-22 17370 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 161.68 160.93 4077400000 308400000 284210000 164680000 1158000 0 0 377640000 374610000 363660000 0 0 0 409740000 331790000 225530000 0 0 0 397390000 412130000 426520000 0 0 0 15054 1294 14577 283218;283219;283220;283221;283222;283223;283224;283225;283226;283227;283228;283229;283230;283231;283232;283233;283234;283235;283236;283237;283238;283239;283240;283241;283242;283243;283244;283245;283246;283247;283248;283249;283250;283251;283252 173945;173946;173947;173948;173949;173950;173951;173952;173953;173954;173955;173956;173957;173958;173959;173960;173961;173962;173963;173964;173965;173966;173967;173968;173969;173970;173971;173972;173973;173974 173957 30 MVDTSDEWIVTR Unmodified 1450.6762 0.67622961 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.864 35.042 2 1.1623E-11 16789 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 185.29 182.9 1756500000 111930000 99815000 109830000 1535200 1224500 843210 139470000 120860000 122400000 1041700 589710 0 183480000 165330000 178510000 0 0 0 187700000 171240000 157330000 1102300 1199500 1020800 15055 273 14578 283253;283254;283255;283256;283257;283258;283259;283260;283261;283262;283263;283264;283265;283266;283267;283268;283269;283270;283271;283272 173975;173976;173977;173978;173979;173980;173981;173982;173983;173984;173985 173979 9 MVEDILAPGLR Unmodified 1212.6536 0.65364367 519 P0A9H1 mug G/U mismatch-specific DNA glycosylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.282 38.606 2 2.989E-05 18868 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.23 129.07 273100000 47568000 47416000 38851000 811830 727650 645630 21919000 19181000 25340000 0 0 0 8887000 9435900 11945000 0 0 0 14499000 13941000 11936000 0 0 0 15056 519 14579 283273;283274;283275;283276;283277;283278;283279;283280;283281;283282;283283;283284;283285;283286;283287 173986;173987;173988;173989;173990;173991;173992;173993;173994;173995 173992 9 MVEEDPAHPR Unmodified 1179.5343 0.53425682 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 1 2 2 1 1 1 11.75 12.386 2;3 1.8162E-05 3335 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 150.36 147.35 1385600000 208200000 181280000 163090000 9303100 9953100 8771600 100950000 32560000 116260000 9739600 7594100 7991400 55801000 71759000 70526000 29376000 32231000 23066000 93486000 82436000 67596000 0 1653700 1919800 15057 570 14580 283288;283289;283290;283291;283292;283293;283294;283295;283296;283297;283298;283299;283300;283301;283302;283303;283304;283305;283306;283307;283308;283309;283310;283311;283312;283313;283314;283315;283316;283317;283318;283319;283320;283321;283322;283323;283324;283325;283326;283327 173996;173997;173998;173999;174000;174001;174002;174003;174004;174005;174006;174007;174008;174009;174010;174011;174012;174013;174014;174015;174016;174017;174018;174019;174020;174021;174022 174018 25 MVEEDPAHPR Oxidation (M) 1195.5292 0.52917144 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 1 0 By MS/MS 1 10.774 11.625 2 0.056838 2860 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 42.864 40.466 4097900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4097900 0 0 0 15058 570 14580 283328 174023 174023 0 MVEQCLEFSPR Unmodified 1394.6323 0.6322563 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 30.673 29.244 2 1.8509E-05 13883 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.98 133.36 149090000 0 0 0 0 0 0 18297000 22596000 17303000 0 0 0 15894000 13639000 13802000 0 0 0 16819000 15807000 14932000 0 0 0 15059 1575 14581 283329;283330;283331;283332;283333;283334;283335;283336;283337 174024;174025;174026 174026 1 MVEREEAVVWDILDEVIR Oxidation (M) 2216.1147 0.11471877 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 1 3 1 2 2 2 54.623 53.546 2;3 2.638E-22 21615 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 191.49 158.29 4281600000 0 0 0 0 0 0 5093800 329870 172130 110970000 135110000 113510000 0 0 0 489020000 1203700000 1711700000 6882400 0 0 133540000 191550000 179980000 15060 458 14582 283338;283339;283340;283341;283342;283343;283344;283345;283346;283347;283348;283349;283350;283351;283352;283353;283354;283355;283356;283357;283358;283359 174027;174028;174029;174030;174031;174032;174033;174034;174035;174036;174037;174038;174039;174040;174041;174042 174042 237 16 MVEREEAVVWDILDEVIR Unmodified 2200.1198 0.11980414 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 2 1 2 6 6 5 1 1 1 3 4 4 3 2 4 6 6 5 55.599 54.376 2;3;4 3.6904E-45 21775 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 307.87 293.84 31247000000 28380000 24136000 34351000 11498000 11210000 10851000 32190000 18481000 27182000 1680200000 1437000000 1743400000 27395000 22976000 24424000 3365600000 9291100000 6710200000 42076000 43933000 52707000 2046500000 2155500000 2405800000 15061 458 14582 283360;283361;283362;283363;283364;283365;283366;283367;283368;283369;283370;283371;283372;283373;283374;283375;283376;283377;283378;283379;283380;283381;283382;283383;283384;283385;283386;283387;283388;283389;283390;283391;283392;283393;283394;283395;283396;283397;283398;283399;283400;283401;283402;283403;283404;283405;283406;283407;283408;283409;283410;283411;283412;283413;283414;283415;283416;283417;283418;283419;283420;283421;283422;283423;283424;283425;283426;283427;283428;283429;283430 174043;174044;174045;174046;174047;174048;174049;174050;174051;174052;174053;174054;174055;174056;174057;174058;174059;174060;174061;174062;174063;174064;174065;174066;174067;174068;174069;174070 174056 28 MVEREEAVVWDILDEVIREHPVLLNR Unmodified 3158.6547 0.65465331 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 3 3 2 2 2 54.859 54.021 3;4;5 7.6462E-73 20680 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 290.41 280.44 3526700000 0 0 0 0 1199300 0 0 0 0 108690000 102980000 91003000 0 0 0 589560000 771950000 1005700000 0 0 0 262580000 277610000 315470000 15062 458 14583 283431;283432;283433;283434;283435;283436;283437;283438;283439;283440;283441;283442;283443;283444;283445;283446;283447;283448;283449;283450;283451;283452 174071;174072;174073;174074;174075;174076;174077;174078;174079;174080;174081;174082;174083;174084;174085;174086;174087 174078 17 MVEREEAVVWDILDEVIREHPVLLNR Oxidation (M) 3174.6496 0.64956793 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 2 By matching By MS/MS By MS/MS 2 2 2 54.643 54.698 4;5 7.2833E-12 20435 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 134.31 129.76 130450000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17316000 47983000 65155000 0 0 0 0 0 0 15063 458 14583 283453;283454;283455;283456;283457;283458 174088;174089;174090 174089 237 3 MVEVNACLK Unmodified 1062.5202 0.52018666 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 22.198 22.099 2 0.00078595 9474 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.28 97.172 746070000 94680000 88695000 80466000 799870 852400 600570 71661000 66455000 66783000 0 0 0 46333000 36739000 40016000 0 0 0 49658000 49638000 52696000 0 0 0 15064 43 14584 283459;283460;283461;283462;283463;283464;283465;283466;283467;283468;283469;283470;283471;283472;283473;283474 174091;174092;174093;174094;174095;174096;174097;174098;174099;174100;174101;174102 174091 12 MVGGVTPGK Unmodified 844.44767 0.44767364 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 13.156 13.901 2 0.0010929 4221 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 93.374 70.354 5402200000 585870000 569520000 614990000 3160800 0 400110 251020000 254040000 270450000 1993900 1581300 1294000 335240000 337200000 282960000 0 0 0 657560000 611980000 622990000 0 0 0 15065 1013 14585 283475;283476;283477;283478;283479;283480;283481;283482;283483;283484;283485;283486;283487;283488;283489;283490;283491;283492;283493 174103;174104;174105;174106;174107;174108;174109;174110;174111;174112;174113;174114;174115;174116 174103 14 MVGKDPR Unmodified 801.41671 0.41670786 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 10.344 10.755 2 0.035059 2355 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 76.847 43.108 105950000 0 0 0 0 0 0 0 10196000 9602200 20546000 24509000 25121000 0 0 0 6782600 0 0 0 0 9193300 0 0 0 15066 1044 14586 283494;283495;283496;283497;283498;283499;283500 174117;174118 174118 2 MVGTTDDPIDSLEHHAEIAK Unmodified 2178.0263 0.02629769 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.118 31.678 4 5.2911E-07 15324 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.169 96.435 707720000 95261000 108820000 96035000 0 0 0 70966000 74149000 73573000 0 0 0 46116000 40378000 39322000 0 0 0 22136000 20952000 20012000 0 0 0 15067 427 14587 283501;283502;283503;283504;283505;283506;283507;283508;283509;283510;283511;283512 174119;174120;174121;174122;174123;174124;174125;174126;174127;174128 174120 10 MVHEVSFDGFTTQSAPWK Unmodified 2065.9568 0.95676156 1967 Q46925 csdA Cysteine desulfurase CsdA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.023 38.358 3 0.0058796 18716 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 44.662 43.956 92419000 7666600 8654400 8018800 0 0 0 5526700 5939500 5116200 0 0 0 6445200 6653700 5053100 0 0 0 10662000 13472000 9211100 0 0 0 15068 1967 14588 283513;283514;283515;283516;283517;283518;283519;283520;283521;283522;283523;283524 174129 174129 1 MVHNGIEYGDMQLIAEAYSLLK Unmodified 2494.2236 0.22361729 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.831 53.397 3 4.1304E-15 26398 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.03 137.79 1609800000 127710000 116250000 101900000 1340500 0 1915100 127980000 113910000 108040000 0 0 0 161300000 122660000 125510000 0 0 0 167400000 181560000 152330000 0 0 0 15069 24 14589 283525;283526;283527;283528;283529;283530;283531;283532;283533;283534;283535;283536;283537;283538 174130;174131;174132;174133;174134;174135;174136;174137;174138;174139;174140;174141 174137 12 MVHPDIILSPQLFGSEILAR Unmodified 2235.2086 0.20855957 1358 P31069 kch Voltage-gated potassium channel Kch yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.501 52.312 3 3.2254E-06 19027 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 95.205 93.936 194900000 24302000 25285000 14132000 6030300 4503300 0 13227000 13725000 16902000 3595200 5649900 3523400 11591000 0 13024000 3435600 2648000 4892200 0 15195000 13236000 0 0 0 15070 1358 14590 283539;283540;283541;283542;283543;283544;283545;283546;283547;283548;283549;283550;283551;283552;283553;283554;283555;283556;283557 174142;174143;174144 174142 1 MVIATVK Unmodified 760.4517 0.45169638 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.962 18.455 2 0.016718 5779 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.462 74.076 149340000 11151000 9307200 8856200 2889200 3578400 2987100 10503000 9452900 10766000 6973400 4519000 5307800 7178000 6760000 6509600 0 0 0 11581000 11186000 10232000 3511000 3271100 2822600 15071 1083 14591 283558;283559;283560;283561;283562;283563;283564;283565;283566;283567;283568;283569;283570;283571;283572;283573;283574;283575;283576;283577;283578 174145;174146;174147;174148;174149;174150;174151;174152;174153;174154 174145 10 MVINALNANVK Unmodified 1185.654 0.65397802 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.038 27.743 2 8.0239E-05 12787 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.63 142.06 7115500000 1835800000 1690400000 1709100000 1979600 1439500 1574600 369960000 389170000 371110000 0 0 0 106320000 101760000 109250000 0 0 0 135450000 147530000 144630000 0 0 0 15072 195 14592 283579;283580;283581;283582;283583;283584;283585;283586;283587;283588;283589;283590;283591;283592;283593 174155;174156;174157;174158;174159;174160;174161;174162;174163;174164;174165 174161 11 MVINALNANVK Oxidation (M) 1201.6489 0.64889264 195 P08997 aceB Malate synthase A yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 23.389 22.606 2 0.00028358 9785 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.6 89.426 55730000 9616600 19518000 14754000 0 0 0 8466600 0 3374400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15073 195 14592 283594;283595;283596;283597;283598;283599 174166;174167;174168;174169 174169 66 3 MVINCAFIGFGK Unmodified 1355.673 0.6729989 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.91 44.387 2 2.3392E-05 21541 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 120.07 116.49 338130000 19139000 22148000 20211000 0 1607500 0 35715000 39958000 34971000 0 0 1978400 28216000 30283000 26158000 0 0 0 27612000 24940000 25198000 0 0 0 15074 1588 14593 283600;283601;283602;283603;283604;283605;283606;283607;283608;283609;283610;283611;283612;283613 174170;174171;174172;174173;174174;174175 174174 6 MVKPGINLR Unmodified 1026.6008 0.60082024 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 17.366 17.941 2 0.0011006 6666 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 105.12 101.71 304860000 42276000 47631000 55579000 0 394480 0 39981000 34893000 0 0 0 0 0 0 25244000 0 0 0 0 0 57061000 993880 806730 0 15075 829 14594 283614;283615;283616;283617;283618;283619;283620;283621;283622;283623 174176;174177;174178;174179;174180;174181 174177 6 MVLDFLLQEK Unmodified 1234.6631 0.66314572 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.963 51.615 2 6.6438E-05 25274 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 133.57 124.36 360320000 28081000 27713000 29128000 0 1876700 0 22077000 21522000 21860000 3111600 3831700 3577600 26942000 22974000 28248000 0 4611200 0 39539000 33803000 35310000 2658700 3453300 0 15076 491 14595 283624;283625;283626;283627;283628;283629;283630;283631;283632;283633;283634;283635;283636;283637;283638;283639;283640;283641;283642 174182;174183;174184;174185;174186;174187;174188;174189;174190;174191;174192;174193;174194;174195 174191 14 MVLETGEHPGALK Unmodified 1380.7071 0.7071358 535 P0A9L8 proC Pyrroline-5-carboxylate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 19.224 19.764 2;3 9.6944E-07 7730 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 135.86 133.7 2943500000 456590000 446830000 380650000 664560 889150 1296600 226830000 212550000 224590000 0 0 0 161210000 157430000 138950000 0 0 0 178340000 166630000 188760000 0 0 1350400 15077 535 14596 283643;283644;283645;283646;283647;283648;283649;283650;283651;283652;283653;283654;283655;283656;283657;283658;283659;283660;283661;283662;283663;283664;283665;283666;283667;283668;283669;283670 174196;174197;174198;174199;174200;174201;174202;174203;174204;174205;174206;174207;174208;174209;174210;174211;174212;174213;174214;174215;174216;174217;174218 174201 23 MVLSGEGSDEVFGGYLYFHK Unmodified 2234.0354 0.035405813 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.908 46.373 3 1.7665E-14 22921 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 136.2 136.2 514270000 56274000 58616000 50639000 0 0 0 93792000 98123000 95590000 5105500 3967200 6672800 7591800 8118300 2188300 0 0 0 9608000 9119400 8865300 0 0 0 15078 1191 14597 283671;283672;283673;283674;283675;283676;283677;283678;283679;283680;283681;283682;283683;283684;283685 174219;174220;174221;174222;174223;174224;174225;174226;174227;174228 174222 10 MVLTVTDDDLVR Unmodified 1375.7017 0.70171607 254 P0A6K1 dapF Diaminopimelate epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 38.966 37.397 2 3.8127E-08 18013 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.36 149.53 92432000 19875000 14097000 21971000 0 0 0 0 15777000 0 0 0 0 0 11847000 8863600 0 0 0 0 0 0 0 0 0 15079 254 14598 283686;283687;283688;283689;283690;283691 174229;174230;174231;174232 174231 4 MVMLFTNSHTIR Unmodified 1448.7268 0.72682539 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 30.577 29.199 2;3 8.396E-12 13653 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 190.24 183.93 901200000 94352000 83191000 75049000 945980 1066200 928430 59061000 60096000 65747000 0 0 0 84852000 81774000 78767000 0 0 0 49236000 71148000 94990000 0 0 0 15080 448 14599 283692;283693;283694;283695;283696;283697;283698;283699;283700;283701;283702;283703;283704;283705;283706;283707;283708;283709;283710;283711;283712;283713;283714;283715;283716;283717;283718 174233;174234;174235;174236;174237;174238;174239;174240;174241;174242;174243;174244 174239 12 MVMVSEFFNEDDPDFDHSLDQK Unmodified 2644.1098 0.10976932 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.569 49.132 3 4.1197E-10 23166 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.03 116.98 310610000 12224000 13606000 11057000 2851600 0 0 11846000 14878000 12753000 11612000 10551000 10879000 28863000 29948000 31041000 0 0 0 28174000 30003000 27054000 8613200 7165800 7488200 15081 1754 14600 283719;283720;283721;283722;283723;283724;283725;283726;283727;283728;283729;283730;283731;283732;283733;283734;283735;283736;283737 174245;174246;174247;174248;174249;174250;174251;174252 174250 8 MVNADELAR Unmodified 1017.4913 0.49132937 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 19.838 20.089 2 0.0003052 7586 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 117.4 106.33 48429000 0 28361000 0 0 0 0 10793000 9275400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15082 1814 14601 283738;283739;283740 174253;174254 174254 2 MVNLVIVSHSSR Unmodified 1340.7235 0.72345457 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1 2 2 2 2 1 1 1 2 2 24.805 23.992 2;3 3.6808E-05 10241 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 99.5 91.396 700060000 33865000 8735300 5860500 0 0 0 73790000 61670000 55502000 0 0 0 97590000 73350000 88847000 2156100 2294200 1543700 43829000 66458000 84572000 0 0 0 15083 1468 14602 283741;283742;283743;283744;283745;283746;283747;283748;283749;283750;283751;283752;283753;283754;283755;283756;283757;283758;283759;283760;283761;283762;283763 174255;174256;174257;174258;174259;174260;174261;174262;174263;174264 174261 9 MVNSGTEATMSAIR Unmodified 1466.6857 0.68574843 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.098 22.432 2 1.671E-19 9142 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 208.46 194.32 1831800000 130260000 139590000 130870000 4112200 2834000 3604600 128670000 121650000 126840000 19204000 15755000 18180000 155880000 141710000 138280000 7326400 5755600 5053900 152620000 185750000 170880000 9749500 8930000 8260700 15084 1227 14603 283764;283765;283766;283767;283768;283769;283770;283771;283772;283773;283774;283775;283776;283777;283778;283779;283780;283781;283782;283783;283784;283785;283786;283787 174265;174266;174267;174268;174269;174270;174271;174272;174273;174274;174275;174276;174277;174278;174279;174280;174281;174282;174283 174282 19 MVNYQLIPVNLK Unmodified 1430.7956 0.79555688 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.772 43.257 2 2.6892E-09 20932 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 178.94 176.43 537960000 57913000 61490000 49380000 0 0 0 63629000 58534000 53906000 0 0 0 28103000 27246000 26438000 0 0 0 35910000 38801000 36612000 0 0 0 15085 154 14604 283788;283789;283790;283791;283792;283793;283794;283795;283796;283797;283798;283799 174284;174285;174286;174287;174288;174289;174290;174291;174292;174293;174294;174295 174289 12 MVPCDFIAPAITHNPLSDHHQK Unmodified 2527.21 0.21003291 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 3 3 3 3 3 3 3 3 36.938 35.258 3;4;5 2.2559E-10 17065 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 125.09 121.69 8033600000 744770000 721470000 666950000 0 0 0 1030300000 1068600000 935310000 0 0 0 396260000 442440000 429150000 0 0 0 516820000 521570000 560000000 0 0 0 15086 277 14605 283800;283801;283802;283803;283804;283805;283806;283807;283808;283809;283810;283811;283812;283813;283814;283815;283816;283817;283818;283819;283820;283821;283822;283823;283824;283825;283826;283827;283828;283829;283830;283831;283832;283833;283834 174296;174297;174298;174299;174300;174301;174302;174303;174304;174305;174306;174307;174308;174309;174310;174311;174312;174313;174314;174315;174316;174317;174318;174319;174320;174321;174322;174323;174324;174325;174326;174327;174328;174329 174307 34 MVPCDFIAPAITHNPLSDHHQK Oxidation (M) 2543.2049 0.20494753 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 36.972 35.305 4 0.00017526 17404 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 69.398 61.952 153200000 11647000 12924000 16246000 0 0 0 17244000 12816000 23558000 0 0 0 14055000 13579000 12319000 0 0 0 0 8437100 10380000 0 0 0 15087 277 14605 283835;283836;283837;283838;283839;283840;283841;283842;283843;283844;283845 174330;174331;174332 174332 133 3 MVPVVALVGR Unmodified 1039.6212 0.62122133 268 P0A6P5 der GTPase Der yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 39.533 37.916 2 0.080193 18205 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 47.082 43.673 25259000 7309300 5657300 4354700 0 0 0 2416400 0 0 0 0 0 0 0 1637700 0 0 0 1912600 0 1970800 0 0 0 15088 268 14606 283846;283847;283848;283849;283850;283851;283852 174333 174333 0 MVPVVALVGRPNVGK Unmodified 1534.9018 0.90175329 268 P0A6P5 der GTPase Der yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.005 32.529 3 0.00011689 15496 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 77.912 76.88 150120000 31674000 23498000 21994000 1408100 1260200 1438800 5531700 6487100 4695600 0 0 0 6858400 7286400 6648700 0 0 0 11528000 10143000 9670400 0 0 0 15089 268 14607 283853;283854;283855;283856;283857;283858;283859;283860;283861;283862;283863;283864;283865;283866;283867 174334;174335;174336;174337;174338;174339;174340;174341;174342 174337 9 MVQAPIFHVNADDPEAVAFVTR Unmodified 2426.2053 0.20526511 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 46.961 45.61 2;3 1.2363E-52 22275 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 302.64 291.69 5022300000 433120000 409970000 378400000 11935000 12137000 12122000 192990000 190270000 196510000 12635000 10155000 12193000 350170000 322200000 347510000 7257600 4084300 4196900 670950000 664380000 660220000 39000000 39787000 40112000 15090 937 14608 283868;283869;283870;283871;283872;283873;283874;283875;283876;283877;283878;283879;283880;283881;283882;283883;283884;283885;283886;283887;283888;283889;283890;283891;283892;283893;283894;283895;283896;283897;283898;283899;283900;283901;283902;283903 174343;174344;174345;174346;174347;174348;174349;174350;174351;174352;174353;174354;174355;174356;174357;174358;174359;174360;174361;174362;174363;174364;174365;174366;174367;174368;174369;174370;174371;174372 174354 26 MVQAYPR Unmodified 863.43236 0.43235793 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 13.596 14.612 2 0.0031257 4408 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.33 77.357 12987000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12987000 0 0 0 0 0 0 0 0 0 15091 1203 14609 283904;283905;283906;283907;283908 174373;174374;174375;174376;174377;174378 174375 6 MVQIPQNPLILVDGSSYLYR Unmodified 2305.214 0.21403888 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.758 53.48 2;3 0.00011296 21354 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 106.42 64.78 119070000 10798000 13191000 13960000 0 0 0 0 14982000 0 0 0 0 11855000 10877000 0 6548600 0 0 11096000 11785000 13974000 0 0 0 15092 37 14610 283909;283910;283911;283912;283913;283914;283915;283916;283917;283918 174379;174380 174379 2 MVQLETFAQR Unmodified 1221.6176 0.61759251 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 32.436 30.644 2 7.1249E-09 11734 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 162.97 158.19 30192000 0 0 0 0 2637500 4035000 0 0 0 0 6058900 0 0 0 0 0 0 0 0 0 0 5047500 6989600 5423300 15093 1754 14611 283919;283920;283921;283922;283923;283924;283925 174381;174382;174383;174384 174381 4 MVQLFFPDPWHK Unmodified 1543.7646 0.7645911 434 P0A8I5 trmB tRNA (guanine-N(7)-)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 2 2 2 2 2 2 2 1 50.032 48.665 2;3 5.017E-05 22686 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 76.522 76.522 389470000 41422000 32090000 29134000 955070 0 493810 20687000 0 23868000 0 0 0 38893000 32773000 29514000 0 0 0 47143000 38232000 48268000 0 5991900 0 15094 434 14612 283926;283927;283928;283929;283930;283931;283932;283933;283934;283935;283936;283937;283938;283939;283940;283941;283942;283943;283944;283945;283946;283947;283948;283949;283950 174385;174386;174387;174388;174389;174390;174391;174392;174393;174394;174395;174396;174397;174398;174399;174400 174400 14 MVQLLDIHYR Unmodified 1286.6805 0.68052712 940 P0AFH0 ogt Methylated-DNA--protein-cysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 35.04 33.715 3 0.00090549 16068 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 81.525 76.209 55763000 12683000 8759200 10740000 0 748280 0 0 0 0 0 0 0 5029900 3585000 3945300 0 0 0 0 4475800 5796300 0 0 0 15095 940 14613 283951;283952;283953;283954;283955;283956;283957;283958;283959 174401;174402;174403 174402 3 MVSLTGSIATGEHIISHTASSIK Unmodified 2339.2155 0.21549544 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 2 1 1 1 1 41.195 39.536 3;4 4.8544E-15 19341 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.42 129.97 1814600000 512910000 545070000 499190000 0 0 0 46625000 36942000 42789000 0 0 0 17802000 39128000 17768000 0 0 0 18140000 18522000 19761000 0 0 0 15096 1925 14614 283960;283961;283962;283963;283964;283965;283966;283967;283968;283969;283970;283971;283972;283973;283974;283975;283976;283977;283978 174404;174405;174406;174407;174408;174409;174410;174411;174412;174413;174414;174415;174416 174410 13 MVSNASALGR Unmodified 1004.5073 0.50731378 699 P0AC44 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.47 15.28 2 1.5138E-07 3710 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 178.83 156.7 596580000 45372000 43773000 35223000 16810000 17010000 17478000 23949000 28052000 27378000 0 0 0 38588000 37343000 37225000 0 0 0 86250000 72043000 70087000 0 0 0 15097 699 14615 283979;283980;283981;283982;283983;283984;283985;283986;283987;283988;283989;283990;283991;283992;283993 174417;174418;174419;174420;174421;174422;174423;174424;174425;174426;174427 174422 11 MVTFHTNHGDIVIK Unmodified 1610.8239 0.8238969 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 1 3 3 3 3 3 3 25.774 24.678 2;3;4 1.5294E-20 11010 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 224.25 207.33 8638500000 868240000 801540000 870630000 3611900 3971000 2727800 740740000 724200000 692660000 0 0 1690200 627070000 602420000 567370000 0 0 0 744470000 719700000 667470000 0 0 0 15098 1222 14616 283994;283995;283996;283997;283998;283999;284000;284001;284002;284003;284004;284005;284006;284007;284008;284009;284010;284011;284012;284013;284014;284015;284016;284017;284018;284019;284020;284021;284022;284023;284024;284025;284026;284027;284028;284029;284030;284031;284032;284033;284034;284035;284036 174428;174429;174430;174431;174432;174433;174434;174435;174436;174437;174438;174439;174440;174441;174442;174443;174444;174445;174446;174447;174448;174449;174450;174451;174452;174453;174454;174455;174456;174457;174458;174459;174460;174461;174462;174463;174464;174465;174466;174467;174468;174469;174470;174471;174472;174473 174444 46 MVTLEHLR Unmodified 997.53789 0.53788563 1618 P60340 truB tRNA pseudouridine synthase B yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 18.982 19.579 2 0.0019937 7115 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 104.21 96.92 38695000 4774200 0 0 0 0 0 0 0 0 0 0 0 5899000 4934800 4383600 855620 0 0 6747800 5226600 5873000 0 0 0 15099 1618 14617 284037;284038;284039;284040;284041;284042;284043;284044 174474;174475 174475 1 MVTLYGIK Unmodified 923.51502 0.51502492 1235 P24178 yffB Protein YffB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.245 30.905 2 0.0018523 13932 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 105.39 98.368 354770000 30408000 21347000 21531000 0 0 0 38562000 38971000 37543000 0 0 0 23729000 23368000 21533000 0 0 0 34419000 32164000 31194000 0 0 0 15100 1235 14618 284045;284046;284047;284048;284049;284050;284051;284052;284053;284054;284055;284056 174476;174477;174478;174479;174480;174481;174482;174483;174484;174485;174486;174487 174486 12 MVVDCAR Unmodified 849.38369 0.38369317 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.789 13.579 2 0.0021324 4011 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 117.7 61.189 616680000 44073000 50285000 45592000 1967500 1673600 3176900 55679000 56002000 41774000 0 0 0 49997000 44229000 42652000 0 0 0 60174000 55876000 53048000 3675800 3388900 3415600 15101 1649 14619 284057;284058;284059;284060;284061;284062;284063;284064;284065;284066;284067;284068;284069;284070;284071;284072;284073;284074 174488;174489;174490;174491;174492;174493;174494;174495;174496;174497 174492 10 MVVQQISIASTVPIGTLHMPLK Unmodified 2362.3116 0.31164444 1917 P77554 yahJ Uncharacterized protein YahJ yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 49.649 48.31 3 0.0013989 23665 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 61.361 60.223 53079000 17624000 19474000 15982000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15102 1917 14620 284075;284076;284077 174498 174498 1 MVVSGAGAAAIACMNLLVALGLQK Unmodified 2357.2633 0.26331403 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.722 54.28 3 1.5598E-30 27089 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 139.11 136.89 501660000 87288000 91612000 76038000 2574100 1682500 1257500 24328000 26203000 18915000 0 0 0 21002000 27440000 21244000 0 0 0 32776000 34675000 34625000 0 0 0 15103 1872 14621 284078;284079;284080;284081;284082;284083;284084;284085;284086;284087;284088;284089;284090;284091;284092 174499;174500;174501 174499 3 MVVTLIHPIAMDDGLR Unmodified 1779.9375 0.93754644 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 6 3 3 4 5 5 8 1 3 2 6 6 7 2 2 2 6 4 5 2 2 2 45.11 43.649 2;3 1.352E-30 20565 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 275.01 264.96 120660000000 10228000000 9437400000 9028100000 150280000 188350000 132860000 9774600000 9510200000 9691200000 121830000 128860000 111130000 10278000000 8941700000 9933100000 161370000 99871000 114170000 10913000000 11034000000 10430000000 97851000 72165000 81844000 15104 1048 14622 284093;284094;284095;284096;284097;284098;284099;284100;284101;284102;284103;284104;284105;284106;284107;284108;284109;284110;284111;284112;284113;284114;284115;284116;284117;284118;284119;284120;284121;284122;284123;284124;284125;284126;284127;284128;284129;284130;284131;284132;284133;284134;284135;284136;284137;284138;284139;284140;284141;284142;284143;284144;284145;284146;284147;284148;284149;284150;284151;284152;284153;284154;284155;284156;284157;284158;284159;284160;284161;284162;284163;284164;284165;284166;284167;284168;284169;284170;284171;284172;284173;284174;284175;284176;284177;284178;284179;284180;284181;284182;284183;284184;284185;284186;284187 174502;174503;174504;174505;174506;174507;174508;174509;174510;174511;174512;174513;174514;174515;174516;174517;174518;174519;174520;174521;174522;174523;174524;174525;174526;174527;174528;174529;174530;174531;174532;174533;174534;174535;174536;174537;174538;174539;174540;174541;174542;174543;174544;174545;174546;174547;174548;174549;174550;174551;174552;174553;174554;174555;174556;174557;174558;174559;174560;174561;174562;174563;174564;174565;174566;174567;174568;174569;174570;174571;174572;174573;174574;174575;174576;174577;174578;174579;174580;174581;174582;174583;174584;174585;174586;174587;174588;174589;174590;174591;174592;174593;174594;174595;174596;174597;174598;174599;174600;174601;174602;174603;174604;174605;174606;174607;174608;174609;174610;174611;174612;174613;174614;174615 174559 110 MVVTLIHPIAMDDGLR Oxidation (M) 1795.9325 0.93246107 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 8 7 10 5 6 5 10 9 7 1 4 4 9 10 11 1 10 8 11 2 3 3 40.301 38.587 2;3 1.4599E-24 19613 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.71 206.77 14297000000 894550000 664780000 1082200000 21313000 20259000 17162000 1553600000 1393100000 1354000000 4647800 12363000 11089000 1099400000 1047100000 946570000 1759300 0 0 1451800000 1387500000 1306000000 7657000 9874500 10512000 15105 1048 14622 284188;284189;284190;284191;284192;284193;284194;284195;284196;284197;284198;284199;284200;284201;284202;284203;284204;284205;284206;284207;284208;284209;284210;284211;284212;284213;284214;284215;284216;284217;284218;284219;284220;284221;284222;284223;284224;284225;284226;284227;284228;284229;284230;284231;284232;284233;284234;284235;284236;284237;284238;284239;284240;284241;284242;284243;284244;284245;284246;284247;284248;284249;284250;284251;284252;284253;284254;284255;284256;284257;284258;284259;284260;284261;284262;284263;284264;284265;284266;284267;284268;284269;284270;284271;284272;284273;284274;284275;284276;284277;284278;284279;284280;284281;284282;284283;284284;284285;284286;284287;284288;284289;284290;284291;284292;284293;284294;284295;284296;284297;284298;284299;284300;284301;284302;284303;284304;284305;284306;284307;284308;284309;284310;284311;284312;284313;284314;284315;284316;284317;284318;284319;284320;284321;284322;284323;284324;284325;284326;284327;284328;284329;284330;284331 174616;174617;174618;174619;174620;174621;174622;174623;174624;174625;174626;174627;174628;174629;174630;174631;174632;174633;174634;174635;174636;174637;174638;174639;174640;174641;174642;174643;174644;174645;174646;174647;174648;174649;174650;174651;174652;174653;174654;174655;174656;174657;174658;174659;174660;174661;174662;174663;174664;174665;174666;174667;174668;174669;174670;174671;174672;174673;174674;174675;174676;174677;174678;174679;174680;174681;174682;174683;174684;174685;174686;174687;174688;174689;174690;174691;174692;174693;174694;174695;174696;174697;174698;174699;174700;174701;174702;174703;174704;174705;174706;174707;174708;174709;174710;174711;174712;174713;174714;174715;174716;174717;174718;174719;174720;174721;174722;174723;174724;174725;174726;174727;174728;174729;174730;174731;174732;174733;174734;174735;174736;174737;174738;174739;174740;174741;174742;174743;174744;174745;174746;174747;174748;174749;174750;174751;174752;174753;174754;174755;174756;174757;174758;174759;174760;174761;174762;174763;174764;174765;174766 174625 471;472 150 MVVTLIHPIAMDDGLR 2 Oxidation (M) 1811.9274 0.92737569 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 2 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 2 1 2 2 2 2 2 1 1 34.166 32.687 2;3 4.4222E-06 14905 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 100.88 86.915 268170000 0 51930000 6173500 2844500 0 2790500 24649000 7488500 8147200 0 0 0 22852000 49395000 49667000 0 0 0 30341000 6061000 5829500 0 0 0 15106 1048 14622 284332;284333;284334;284335;284336;284337;284338;284339;284340;284341;284342;284343;284344;284345;284346;284347;284348;284349;284350;284351 174767;174768;174769;174770 174770 471;472 3 MVYAPTQEHGK Unmodified 1259.5969 0.59685707 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 12.267 12.881 2;3 1.2503E-07 3660 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.95 103.14 2476500000 106350000 237920000 247420000 14199000 19264000 20635000 167330000 154690000 169710000 27267000 27911000 26926000 179600000 158780000 163800000 12185000 10818000 10026000 215920000 213440000 228100000 21676000 20132000 22443000 15107 1210 14623 284352;284353;284354;284355;284356;284357;284358;284359;284360;284361;284362;284363;284364;284365;284366;284367;284368;284369;284370;284371;284372;284373;284374;284375;284376;284377;284378;284379;284380;284381;284382;284383;284384;284385;284386;284387;284388;284389;284390;284391;284392;284393;284394;284395;284396;284397;284398;284399 174771;174772;174773;174774;174775;174776;174777;174778;174779;174780;174781;174782;174783;174784;174785;174786;174787;174788;174789;174790;174791;174792;174793;174794;174795;174796;174797;174798;174799;174800;174801 174793 25 MVYEAHSTDYQTR Unmodified 1599.6988 0.69875596 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 14.205 14.792 2;3 1.0795E-23 4748 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 254.53 252.38 7187900000 503470000 141440000 460410000 2720800 19454000 20203000 1064700000 1025400000 936520000 63960000 58213000 58668000 465550000 443230000 491000000 19586000 19292000 13677000 423950000 447740000 450480000 22332000 17801000 17985000 15108 1046 14624 284400;284401;284402;284403;284404;284405;284406;284407;284408;284409;284410;284411;284412;284413;284414;284415;284416;284417;284418;284419;284420;284421;284422;284423;284424;284425;284426;284427;284428;284429;284430;284431;284432;284433;284434;284435;284436;284437;284438;284439;284440;284441;284442;284443 174802;174803;174804;174805;174806;174807;174808;174809;174810;174811;174812;174813;174814;174815;174816;174817;174818;174819;174820;174821;174822;174823;174824;174825;174826;174827;174828;174829;174830;174831;174832;174833;174834 174809 32 MVYSYTEK Oxidation (M) 1035.4583 0.45829791 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 4 3 4 4 5 4 4 5 15.035 15.157 2 0.00010188 3470 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 165.11 165.11 774450000 4249500 0 0 0 0 0 0 2990700 0 76969000 53874000 45933000 0 0 0 129390000 125150000 131190000 0 0 0 78700000 60585000 65422000 15109 463 14625 284444;284445;284446;284447;284448;284449;284450;284451;284452;284453;284454;284455;284456;284457;284458;284459;284460;284461;284462;284463;284464;284465;284466;284467;284468;284469;284470;284471;284472;284473;284474;284475;284476;284477;284478;284479;284480;284481 174835;174836;174837;174838;174839;174840;174841;174842;174843;174844;174845;174846;174847;174848;174849;174850;174851;174852;174853;174854;174855;174856;174857;174858;174859 174839 273 25 MVYSYTEK Unmodified 1019.4634 0.46338328 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 3 2 2 2 4 3 3 2 2 2 2 2 2 16.964 17.376 1;2 0.00069413 5043 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 127.12 127.12 19571000000 135870000 117020000 119900000 0 2868000 4170800 129790000 132620000 115020000 1528500000 1264100000 600400000 157650000 154310000 145240000 4199700000 3678500000 3660500000 187230000 176730000 185200000 1179700000 864010000 831960000 15110 463 14625 284482;284483;284484;284485;284486;284487;284488;284489;284490;284491;284492;284493;284494;284495;284496;284497;284498;284499;284500;284501;284502;284503;284504;284505;284506;284507;284508;284509;284510;284511;284512;284513;284514;284515;284516;284517;284518;284519;284520;284521;284522;284523;284524;284525;284526;284527;284528;284529;284530 174860;174861;174862;174863;174864;174865;174866;174867;174868;174869;174870;174871;174872;174873;174874;174875;174876;174877;174878;174879;174880;174881;174882;174883;174884;174885;174886;174887;174888;174889;174890;174891;174892;174893 174870 33 MVYSYTEK Acetyl (Protein N-term) 1061.4739 0.47394797 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 1 0 0 By MS/MS 1 36.412 36.566 2 0.053281 12456 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 53.968 53.968 10064000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10064000 0 0 0 0 0 0 0 15111 463 14625 284531 174894 174894 0 MVYSYTEKK Unmodified 1147.5583 0.5583463 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 13.148 13.304 2;3 0.0013689 3078 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 73.985 70.142 411250000 0 0 0 0 0 0 0 0 0 32831000 27363000 26663000 0 0 0 81122000 74365000 58999000 0 0 0 32132000 43690000 34083000 15112 463 14626 284532;284533;284534;284535;284536;284537;284538;284539;284540;284541;284542;284543;284544;284545;284546;284547;284548;284549 174895;174896;174897;174898;174899;174900;174901;174902;174903;174904;174905;174906;174907;174908 174899 14 MWDFHVEDFMPER Unmodified 1737.7279 0.7279476 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.051 49.581 3 6.5117E-06 19870 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 112.51 107.66 43582000 0 0 0 0 0 0 7354600 8103400 8182500 4504400 5073600 6378000 0 0 3985100 0 0 0 0 0 0 0 0 0 15113 1877 14627 284550;284551;284552;284553;284554;284555;284556 174909;174910;174911;174912 174910 4 MWEFFER Unmodified 1043.4535 0.4534873 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.37 43.963 2 0.0011261 17342 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 135.87 135.87 3517900000 360960000 352640000 362000000 24908000 24968000 24109000 124460000 117360000 124140000 73419000 72467000 66361000 174800000 155070000 130250000 75051000 47506000 53480000 322200000 372350000 312880000 50003000 48342000 48192000 15114 1644 14628 284557;284558;284559;284560;284561;284562;284563;284564;284565;284566;284567;284568;284569;284570;284571;284572;284573;284574;284575;284576;284577;284578;284579;284580 174913;174914;174915;174916;174917;174918;174919;174920;174921;174922;174923;174924;174925;174926;174927;174928;174929;174930;174931;174932;174933;174934;174935;174936;174937;174938;174939 174922 27 MWEFFER Oxidation (M) 1059.4484 0.44840192 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 1 2 2 1 2 1 2 2 2 2 1 2 1 41.219 39.373 2 0.0020554 19834 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.43 103.86 177930000 22394000 22096000 14275000 1495900 1339200 1520800 1463600 8630600 7359300 5738800 5077000 2559500 8254300 7568500 9599000 0 0 0 17692000 16120000 16528000 2232900 3538900 2446400 15115 1644 14628 284581;284582;284583;284584;284585;284586;284587;284588;284589;284590;284591;284592;284593;284594;284595;284596;284597;284598;284599;284600;284601;284602;284603;284604;284605;284606;284607;284608;284609;284610;284611;284612;284613;284614;284615;284616 174940;174941;174942;174943;174944;174945;174946;174947;174948;174949;174950;174951;174952;174953;174954;174955;174956;174957;174958;174959;174960;174961 174945 585 20 MWPDLQK Unmodified 916.44767 0.44767364 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 30.209 28.844 2 0.088256 13834 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.523 43.259 88456000 0 0 0 0 0 0 12213000 0 13389000 0 0 0 10844000 12341000 9484300 0 0 0 0 15341000 14842000 0 0 0 15116 37 14629 284617;284618;284619;284620;284621;284622;284623 174962;174963 174962 0 MWQAISR Unmodified 890.44326 0.44325696 1936 P77739 yniA Uncharacterized protein YniA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 22.018 22.001 2 0.015808 9406 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.381 69.819 233240000 47631000 42560000 43555000 0 0 0 21675000 17795000 19034000 0 0 419070 10087000 8205400 6373000 0 0 0 5475300 4914400 5513600 0 0 0 15117 1936 14630 284624;284625;284626;284627;284628;284629;284630;284631;284632;284633;284634;284635;284636 174964;174965;174966 174964 3 MYALTQGR Unmodified 938.46439 0.46438634 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.387 19.002 2 0.00011588 7395 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 157.99 126.03 362970000 40078000 42389000 33330000 0 0 0 32060000 27983000 32532000 0 0 0 23088000 19150000 21043000 0 0 0 35251000 26076000 29992000 0 0 0 15118 904 14631 284637;284638;284639;284640;284641;284642;284643;284644;284645;284646;284647;284648 174967;174968;174969;174970;174971;174972;174973;174974;174975 174967 9 MYAVFQSGGK Unmodified 1086.5168 0.51681584 985 P0AG48 rplU 50S ribosomal protein L21 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.224 24.225 2 4.0534E-07 11014 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 176.09 158.7 2892500000 346320000 366960000 322850000 15258000 15959000 17156000 110720000 112320000 96412000 32275000 35775000 0 168590000 177270000 148550000 42571000 25137000 25793000 225590000 254630000 255680000 35560000 30043000 31087000 15119 985 14632 284649;284650;284651;284652;284653;284654;284655;284656;284657;284658;284659;284660;284661;284662;284663;284664;284665;284666;284667;284668;284669;284670;284671 174976;174977;174978;174979;174980;174981;174982;174983;174984;174985;174986;174987;174988;174989;174990;174991;174992;174993;174994;174995;174996;174997;174998 174983 23 MYDLGFIK Unmodified 985.49429 0.49428948 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.382 39.597 2 0.0062633 19265 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 85.265 74.196 171510000 19746000 17638000 16604000 1836000 1671500 1538500 9386400 9453600 8063400 1367700 0 1225500 8735500 6673900 7935400 0 0 0 20163000 22711000 16760000 0 0 0 15120 438 14633 284672;284673;284674;284675;284676;284677;284678;284679;284680;284681;284682;284683;284684;284685;284686;284687;284688 174999;175000;175001;175002;175003;175004;175005;175006;175007;175008;175009 175002 11 MYDYLRDELPALVQSQFNVSDR Unmodified 2658.2748 0.27480124 1405 P33018 yeiG S-formylglutathione hydrolase YeiG yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 53.279 51.845 3 4.8951E-07 25484 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.72 98.917 96476000 22952000 21773000 24996000 0 0 0 4713100 0 3298500 0 0 0 4078600 2013300 0 0 0 0 5600800 3373400 3677500 0 0 0 15121 1405 14634 284689;284690;284691;284692;284693;284694;284695;284696;284697;284698 175010 175010 1 MYFLNDLNFSR Unmodified 1418.6653 0.66527099 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.317 49.029 2 8.3001E-08 19597 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 174.41 166.48 340240000 5681700 5214100 3718800 2639100 2831300 3425800 19662000 20850000 18732000 17212000 19111000 18578000 20661000 19309000 21077000 5687600 2902900 0 33254000 33110000 30300000 11242000 12267000 12769000 15122 1492 14635 284699;284700;284701;284702;284703;284704;284705;284706;284707;284708;284709;284710;284711;284712;284713;284714;284715;284716;284717;284718;284719;284720;284721 175011;175012;175013;175014;175015;175016;175017;175018;175019;175020;175021;175022;175023;175024;175025;175026;175027;175028;175029 175014 19 MYFLPAIR Unmodified 1009.5419 0.54190838 1527 P39337 yjgM Uncharacterized N-acetyltransferase YjgM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.612 43.097 2 0.00031488 21074 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 146.21 126.74 153260000 20873000 19292000 16544000 0 0 0 12100000 10049000 12116000 0 0 0 8953400 9008500 8052400 0 0 0 12193000 11861000 12214000 0 0 0 15123 1527 14636 284722;284723;284724;284725;284726;284727;284728;284729;284730;284731;284732;284733 175030;175031;175032;175033;175034;175035;175036 175034 7 MYGEKQENVYYYITTLNENYHMPAMPEGAEEGIR Unmodified 4039.8067 0.80667479 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 49.97 48.573 3;4;5 1.3366E-55 19208 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 236.33 236.33 2432300000 0 0 0 444890000 439970000 427070000 0 0 0 12692000 7459100 10580000 0 0 0 0 0 0 0 0 0 347670000 362960000 379000000 15124 939 14637 284734;284735;284736;284737;284738;284739;284740;284741;284742;284743;284744;284745;284746;284747;284748;284749;284750;284751;284752;284753;284754 175037;175038;175039;175040;175041;175042;175043;175044;175045;175046;175047;175048;175049;175050;175051;175052;175053;175054 175041 18 MYGEKQENVYYYITTLNENYHMPAMPEGAEEGIR Oxidation (M) 4055.8016 0.80158941 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 3 3 1 1 1 48.705 47.312 3;4 1.4656E-18 17148 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 139.54 139.54 154460000 0 0 0 44375000 35295000 37461000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10587000 14052000 12692000 15125 939 14637 284755;284756;284757;284758;284759;284760;284761;284762;284763;284764;284765;284766 175055;175056;175057;175058;175059;175060;175061;175062;175063;175064 175063 440;441;442 10 MYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRK Unmodified 4167.9016 0.90163781 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 1 2 2 1 4 3 3 46.001 44.28 3;4;5;6 1.6634E-19 17465 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 152.23 152.23 4198000000 0 0 0 745520000 804630000 714840000 0 0 0 15299000 20655000 18251000 0 0 0 0 0 11297000 0 0 0 639840000 555330000 672320000 15126 939 14638 284767;284768;284769;284770;284771;284772;284773;284774;284775;284776;284777;284778;284779;284780;284781;284782;284783;284784;284785;284786;284787;284788;284789;284790;284791;284792;284793;284794 175065;175066;175067;175068;175069;175070;175071;175072;175073;175074;175075;175076;175077;175078;175079;175080;175081;175082;175083;175084;175085;175086;175087;175088;175089;175090;175091 175069 27 MYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRK Oxidation (M) 4183.8966 0.89655243 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 4 4 1 1 44.201 42.467 4;5 1.5132E-11 15497 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 110.09 110.09 225260000 0 0 0 62036000 32088000 73899000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31868000 19664000 5706000 15127 939 14638 284795;284796;284797;284798;284799;284800;284801;284802;284803;284804;284805;284806;284807;284808;284809;284810;284811;284812;284813 175092;175093;175094;175095;175096;175097;175098;175099;175100;175101;175102;175103;175104;175105 175097 440;441;442 14 MYGLPAAAIAIWHSAKPENR Unmodified 2195.131 0.13097795 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 43.699 42.116 3;4 1.6938E-14 16612 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 137.45 136.76 1474900000 65507000 60047000 46538000 18983000 23662000 21487000 82236000 82510000 97719000 93586000 73492000 55992000 105030000 96241000 94321000 18425000 13218000 12125000 99562000 108250000 124620000 26127000 27516000 27680000 15128 1742 14639 284814;284815;284816;284817;284818;284819;284820;284821;284822;284823;284824;284825;284826;284827;284828;284829;284830;284831;284832;284833;284834;284835;284836;284837;284838;284839;284840;284841;284842;284843;284844;284845;284846;284847;284848;284849;284850;284851;284852;284853;284854;284855;284856;284857 175106;175107;175108;175109;175110;175111;175112;175113;175114;175115;175116;175117;175118;175119;175120;175121;175122;175123;175124;175125;175126;175127;175128;175129;175130;175131;175132;175133;175134;175135;175136 175121 31 MYKNIVDGNHQMEPGMPESFNVLLK Unmodified 2890.3816 0.38159127 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 41.318 39.972 4 0.015573 13900 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 42.106 41.284 32763000 0 0 0 0 0 0 0 0 0 0 0 1475700 0 0 0 0 10180000 8933300 0 0 0 5174700 3452900 3546600 15129 463 14640 284858;284859;284860;284861;284862;284863 175137;175138;175139 175137 3 MYNIADR Unmodified 881.40654 0.40653711 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 17.792 18.491 2 0.004947 6849 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.69 61.005 187980000 68774000 63658000 55550000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15130 1374 14641 284864;284865;284866 175140;175141;175142 175140 3 MYPDILNYDQVVK Unmodified 1596.7858 0.78578005 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 46.248 44.755 2 7.5923E-06 21017 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 123.79 120.67 484060000 11693000 8733500 9754500 0 0 0 95084000 75504000 76893000 0 0 0 54803000 49709000 47799000 0 0 0 0 0 54083000 0 0 0 15131 1323 14642 284867;284868;284869;284870;284871;284872;284873;284874;284875;284876;284877 175143;175144;175145;175146;175147;175148;175149 175148 7 MYPEEPVYLPPR Unmodified 1489.7275 0.72753689 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 1 2 1 1 1 1 2 1 1 2 1 2 1 2 1 1 36.958 35.304 2 8.6296E-05 14156 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 98.033 95.879 147270000 8335200 10896000 4934200 2498900 2683600 3913700 13504000 30253000 12467000 7196500 7497100 5997900 0 0 0 4305500 611760 0 0 0 16030000 7079500 4323300 4738000 15132 930 14643 284878;284879;284880;284881;284882;284883;284884;284885;284886;284887;284888;284889;284890;284891;284892;284893;284894;284895;284896;284897;284898;284899;284900;284901;284902;284903;284904;284905;284906 175150;175151;175152;175153;175154;175155;175156;175157;175158;175159;175160;175161;175162;175163;175164;175165;175166;175167;175168;175169;175170;175171 175150 12 MYPHEFSGGMR Unmodified 1310.5536 0.55361205 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.411 18.852 3 0.0004691 6994 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.069 68.069 185760000 27347000 22692000 24372000 7726000 8731300 5936200 0 11799000 9243300 3100700 4209500 2993900 6936100 11425000 10009000 0 0 0 9061200 9045000 7900800 1661600 1570700 0 15133 1807 14644 284907;284908;284909;284910;284911;284912;284913;284914;284915;284916;284917;284918;284919;284920;284921;284922;284923;284924;284925 175172;175173;175174;175175;175176;175177;175178;175179;175180;175181;175182;175183 175180 12 MYPVDLHMHTVASTHAYSTLSDYIAQAK Unmodified 3149.495 0.49504112 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.737 39.064 4 0.1527 19537 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 16.601 15.719 132550000 12026000 14093000 13116000 1153900 0 0 13359000 15803000 13487000 0 0 0 10669000 6562600 6849200 0 0 0 12233000 0 13201000 0 0 0 15134 1789 14645 284926;284927;284928;284929;284930;284931;284932;284933;284934;284935;284936;284937 175184 175184 1 MYQDLIR Unmodified 937.46914 0.46913736 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.054 24.879 2 0.0014403 11174 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.96 104.96 2693300000 309280000 252710000 251880000 1729100 1635400 1350400 237070000 241690000 227850000 0 0 0 204930000 172750000 177260000 0 0 0 205960000 214090000 193090000 0 0 0 15135 1658 14646 284938;284939;284940;284941;284942;284943;284944;284945;284946;284947;284948;284949;284950;284951;284952 175185;175186;175187;175188;175189;175190;175191;175192;175193;175194;175195;175196 175190 12 MYQHHNWQGALLDYPVSK Unmodified 2186.0367 0.036743217 1802 P76004 ycgM Uncharacterized protein YcgM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 1 29.493 28.233 3;4 9.2009E-07 13014 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.227 97.538 377510000 68127000 68154000 54835000 0 0 0 26758000 24782000 34457000 0 0 0 20533000 21707000 10665000 0 0 0 16725000 17892000 12870000 0 0 0 15136 1802 14647 284953;284954;284955;284956;284957;284958;284959;284960;284961;284962;284963;284964;284965;284966;284967;284968;284969;284970;284971;284972;284973;284974;284975 175197;175198;175199;175200;175201 175198 5 MYQVVASDLDGTLLSPDHTLSPYAK Unmodified 2720.3367 0.33673279 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.481 47.15 3 2.8654E-22 22757 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 169.42 168.67 597640000 30531000 32843000 31842000 0 0 0 50710000 54219000 53433000 0 0 0 47911000 44429000 45057000 0 0 0 71788000 70736000 64143000 0 0 0 15137 1313 14648 284976;284977;284978;284979;284980;284981;284982;284983;284984;284985;284986;284987 175202;175203;175204;175205;175206;175207;175208;175209;175210;175211 175205 10 MYTNPLR Unmodified 893.44292 0.44292261 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.42 19.96 2 0.0019894 7339 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.55 96.576 510080000 53014000 54635000 51083000 0 252680 0 0 48930000 0 0 0 0 0 43464000 49669000 0 0 0 69852000 74668000 64511000 0 0 0 15138 1634 14649 284988;284989;284990;284991;284992;284993;284994;284995;284996;284997;284998;284999 175212;175213;175214;175215;175216;175217;175218;175219;175220;175221 175219 10 MYVDEIFSGLDYANFPK Unmodified 2007.9288 0.92881548 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.924 53.475 2 1.3179E-10 26641 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 147.71 147.1 633790000 76203000 72531000 73144000 5115700 3538200 4172800 29968000 37548000 32645000 7258100 6764500 0 45073000 36471000 40922000 0 0 0 48269000 51416000 51990000 5528600 0 5227800 15139 279 14650 285000;285001;285002;285003;285004;285005;285006;285007;285008;285009;285010;285011;285012;285013;285014;285015;285016;285017;285018 175222;175223;175224;175225;175226;175227 175225 6 MYVVSTK Unmodified 826.42588 0.42587556 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.674 16.222 2 0.0028729 4604 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 110.34 90.491 4135600000 224320000 241780000 226610000 23974000 25816000 29276000 515830000 535040000 529700000 63459000 53602000 64062000 286580000 253410000 232980000 8895000 9003500 7147300 292120000 244610000 242870000 7042200 9718600 7801800 15140 1045 14651 285019;285020;285021;285022;285023;285024;285025;285026;285027;285028;285029;285030;285031;285032;285033;285034;285035;285036;285037;285038;285039;285040;285041;285042 175228;175229;175230;175231;175232;175233;175234;175235;175236;175237;175238;175239;175240;175241;175242;175243 175228 12 MYVVSTK Oxidation (M) 842.42079 0.42079019 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 12.366 13.195 2 0.061966 3904 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 63.287 54.604 92004000 0 0 0 0 0 0 29691000 28617000 25880000 0 0 0 0 7816900 0 0 0 0 0 0 0 0 0 0 15141 1045 14651 285043;285044;285045;285046 175244 175244 1 MYYPFVR Unmodified 974.46841 0.46840908 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 35.167 33.808 2 0.0040528 16019 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.42 100.56 49623000 10602000 8621300 8934200 0 0 0 0 0 0 0 0 0 0 0 4404600 0 0 0 5659200 4790000 6611700 0 0 0 15142 335 14652 285047;285048;285049;285050;285051;285052;285053 175245;175246;175247;175248 175248 4 NAADEDRDALR Unmodified 1244.5745 0.57454173 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 1 1 2 2 2 2 2 2 1 1 1 11.535 12.291 2;3 1.4566E-14 3225 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 221.68 200.78 2053900000 197110000 153220000 159180000 43858000 49214000 38900000 80345000 76091000 72218000 53647000 50709000 47854000 136210000 138160000 117230000 0 0 0 203840000 188350000 191190000 18975000 18321000 19235000 15143 502 14653 285054;285055;285056;285057;285058;285059;285060;285061;285062;285063;285064;285065;285066;285067;285068;285069;285070;285071;285072;285073;285074;285075;285076;285077;285078;285079;285080;285081;285082;285083;285084;285085;285086;285087 175249;175250;175251;175252;175253;175254;175255;175256;175257;175258;175259;175260;175261;175262;175263;175264;175265;175266;175267;175268;175269;175270;175271;175272 175269 24 NAADLYLYPNTLIVVK Unmodified 1805.9927 0.99273636 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.785 50.538 2 3.9293E-07 25057 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.38 95.818 231510000 26790000 30400000 26934000 0 0 0 20749000 17082000 16358000 0 0 0 18243000 17401000 13754000 0 0 0 14498000 13921000 15373000 0 0 0 15144 184 14654 285088;285089;285090;285091;285092;285093;285094;285095;285096;285097;285098;285099 175273;175274;175275;175276 175273 4 NAAEQVLAALHSHPLGK Unmodified 1754.9428 0.94276648 1240 P24193 hypE Hydrogenase isoenzymes formation protein HypE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 2 2 2 2 2 2 1 1 1 1 1 1 2 2 2 37.171 35.213 3;4 0.00076364 14364 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 64.537 59.989 216770000 8863600 5501300 5038200 0 0 783770 27730000 32440000 30063000 7485200 7342800 6142300 10727000 18556000 13809000 0 0 0 9742800 12567000 12748000 1833000 2807900 2591800 15145 1240 14655 285100;285101;285102;285103;285104;285105;285106;285107;285108;285109;285110;285111;285112;285113;285114;285115;285116;285117;285118;285119;285120;285121;285122;285123;285124;285125;285126;285127 175277;175278;175279;175280;175281;175282 175277 6 NAALLAEVPHSVPAVTVNR Unmodified 1957.0745 0.074508932 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 37.175 35.659 2;3 1.542E-36 17190 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 225.86 214.95 386180000 134660000 121830000 109250000 2003200 2256700 2691900 0 0 0 0 0 0 4601600 5714800 3178100 0 0 0 0 0 0 0 0 0 15146 1168 14656 285128;285129;285130;285131;285132;285133;285134;285135;285136;285137;285138;285139 175283;175284;175285;175286;175287;175288;175289 175286 4 NAATTAQAGGVQVSTMTHTMQEIATSSQK Unmodified 2948.3968 0.39678364 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 39.216 37.496 3;4 3.21E-11 13195 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 121.86 121.78 29264000 0 0 0 9414000 10170000 9680300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15147 152 14657 285140;285141;285142;285143;285144;285145 175290;175291;175292;175293;175294;175295 175292 6 NADALTLQAPAQR Unmodified 1367.7157 0.71572665 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS 1 25.058 24.207 2 8.4763E-15 10770 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.09 157.17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15148 1160 14658 285146 175296 175296 1 NADEMAAHLK Unmodified 1098.5128 0.51279309 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 13.363 14.163 2;3 0.00040695 4321 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.1 101.08 1662400000 522290000 572540000 567610000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15149 1762 14659 285147;285148;285149;285150;285151;285152 175297;175298;175299;175300 175299 4 NADHAEQPVVNYLLAAEAAQQR Unmodified 2407.188 0.18803514 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 44.205 42.234 3 0.00016442 16830 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 70.345 67.229 96694000 0 0 3359300 3154200 2044700 2170800 20417000 23070000 22440000 7174300 4815000 4734100 0 0 0 0 0 0 0 0 0 3315200 0 0 15150 717 14660 285153;285154;285155;285156;285157;285158;285159;285160;285161;285162;285163 175301;175302;175303 175301 1 NADLPLAQAAIDR Unmodified 1366.7205 0.72047768 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.154 33.656 2 1.2627E-05 16000 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 115.33 94.627 131430000 0 0 6577200 2662600 2407600 2213700 0 0 8191200 7917700 6671700 7720700 6629000 9193700 0 2429600 2093200 1708500 15924000 16879000 18531000 4839700 3812900 5031000 15151 690 14661 285164;285165;285166;285167;285168;285169;285170;285171;285172;285173;285174;285175;285176;285177;285178;285179;285180;285181;285182 175304;175305;175306 175306 3 NADTVVIGR Unmodified 943.50869 0.50869399 1385 P32099 lplA Lipoate-protein ligase A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 16.934 17.601 2 0.00029459 6037 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 118.32 69.537 106590000 0 0 0 0 0 1357600 0 0 0 0 1381300 968800 23135000 17499000 15620000 0 0 0 0 23584000 23043000 0 0 0 15152 1385 14662 285183;285184;285185;285186;285187;285188;285189;285190 175307;175308;175309;175310;175311 175310 5 NAEFLQAYGVAIADGPLK Unmodified 1875.9731 0.97306355 400 P0A862 tpx Thiol peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 4 3 2 2 2 3 3 3 1 2 2 3 4 2 1 3 2 4 1 1 2 51.798 50.568 2;3 1.8299E-36 24679 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 292.76 278.8 11730000000 1177200000 1132400000 1005800000 10853000 8628700 8318100 833080000 799190000 802000000 0 2670900 2387000 947660000 839960000 866360000 2713300 1420900 0 1183200000 1087500000 1011700000 1973800 1905500 2549900 15153 400 14663 285191;285192;285193;285194;285195;285196;285197;285198;285199;285200;285201;285202;285203;285204;285205;285206;285207;285208;285209;285210;285211;285212;285213;285214;285215;285216;285217;285218;285219;285220;285221;285222;285223;285224;285225;285226;285227;285228;285229;285230;285231;285232;285233;285234;285235;285236;285237;285238;285239;285240;285241;285242;285243 175312;175313;175314;175315;175316;175317;175318;175319;175320;175321;175322;175323;175324;175325;175326;175327;175328;175329;175330;175331;175332;175333;175334;175335;175336;175337;175338;175339;175340;175341;175342;175343;175344;175345;175346;175347;175348 175316 35 NAELACEVTLQPLR Unmodified 1612.8243 0.82429083 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.093 36.419 2 1.1321E-20 18103 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 224.66 216.44 370840000 36948000 32796000 30149000 0 0 0 28603000 32289000 35286000 0 0 0 27730000 23642000 25771000 0 0 0 37233000 29910000 30484000 0 0 0 15154 1332 14664 285244;285245;285246;285247;285248;285249;285250;285251;285252;285253;285254;285255 175349;175350;175351;175352;175353;175354;175355;175356;175357;175358;175359;175360 175349 12 NAFANLQK Unmodified 904.47667 0.47666558 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.758 18.167 2 0.0004557 6234 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 138.07 128.83 1347100000 32643000 0 0 23136000 21665000 20201000 145690000 128230000 123160000 78943000 65806000 65243000 96003000 107110000 4952100 10136000 9324800 9117300 87483000 117690000 109060000 29434000 33990000 28028000 15155 1742 14665 285256;285257;285258;285259;285260;285261;285262;285263;285264;285265;285266;285267;285268;285269;285270;285271;285272;285273;285274;285275;285276;285277 175361;175362;175363;175364;175365;175366;175367;175368;175369;175370;175371;175372;175373 175373 12 NAFRPLTVK Unmodified 1044.608 0.60801411 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.104 17.642 2 7.0107E-05 4637 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 151.44 131.74 1272700000 0 0 0 22103000 16461000 15620000 121710000 131700000 137500000 2257100 2053900 2069800 96206000 110900000 112760000 0 0 0 111390000 126760000 113330000 47022000 55036000 47804000 15156 679 14666 285278;285279;285280;285281;285282;285283;285284;285285;285286;285287;285288;285289;285290;285291;285292;285293;285294;285295 175374;175375;175376;175377;175378;175379;175380;175381;175382;175383;175384;175385 175381 12 NAFSQALK Unmodified 877.46577 0.46576654 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.173 19.503 2 0.0008507 7674 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.49 108.93 5715600000 358310000 307890000 251860000 34904000 31997000 32095000 790900000 791150000 698170000 79358000 74074000 74786000 373010000 313900000 311430000 9499800 6092800 6454300 369960000 395570000 356190000 18002000 13530000 16426000 15157 1045 14667 285296;285297;285298;285299;285300;285301;285302;285303;285304;285305;285306;285307;285308;285309;285310;285311;285312;285313;285314;285315;285316;285317;285318;285319 175386;175387;175388;175389;175390;175391;175392;175393;175394;175395;175396;175397;175398;175399;175400;175401;175402;175403;175404;175405;175406;175407;175408;175409 175392 24 NAGAEFYDQEVVVDKDQLVTSR Unmodified 2482.1976 0.19759677 1570 P45470 yhbO Protein YhbO yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.003 34.443 3 4.9967E-28 16625 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.09 176.53 485210000 81137000 90159000 82756000 678260 0 0 53249000 53262000 51107000 0 0 0 10690000 11330000 8122500 0 0 0 12478000 14614000 15630000 0 0 0 15158 1570 14668 285320;285321;285322;285323;285324;285325;285326;285327;285328;285329;285330;285331;285332 175410;175411;175412;175413;175414;175415 175413 6 NAGDAIMQVYDGTKPMDVVSK Unmodified 2238.0661 0.066054015 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 1 2 2 2 39.906 38.188 2;3 1.6021E-42 18684 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 274.48 263.04 1103500000 202390000 197770000 166790000 0 0 0 69818000 86449000 73986000 0 0 1055200 48571000 51678000 38325000 0 0 0 51882000 59340000 55407000 0 0 0 15159 1193 14669 285333;285334;285335;285336;285337;285338;285339;285340;285341;285342;285343;285344;285345;285346;285347;285348;285349;285350;285351;285352;285353;285354;285355 175416;175417;175418;175419;175420;175421;175422;175423;175424;175425;175426;175427;175428;175429 175423 14 NAGDTASIPTIEAILNEEK Unmodified 1984.9953 0.99531514 1178 P21363 yciE Protein YciE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 1 1 1 52.354 51.078 2;3 8.3157E-14 24948 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.19 185.24 324220000 98374000 90274000 104690000 0 0 0 6491100 7291000 6080700 0 0 0 0 0 2619800 0 0 0 3534500 4871600 0 0 0 0 15160 1178 14670 285356;285357;285358;285359;285360;285361;285362;285363;285364;285365;285366;285367;285368 175430;175431;175432;175433;175434 175433 5 NAGELDTVLAK Unmodified 1129.5979 0.59790293 890 P0AEW4 cpdA 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 26.79 25.688 2 0.00029184 11671 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 92.732 66.627 207280000 28424000 26692000 19087000 0 0 0 21736000 0 13652000 0 0 0 12498000 13441000 16505000 0 0 0 18719000 20405000 16118000 0 0 0 15161 890 14671 285369;285370;285371;285372;285373;285374;285375;285376;285377;285378;285379 175435 175435 1 NAGIEVVEALK Unmodified 1141.6343 0.63428844 246 P0A6H8 clsA Cardiolipin synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 29.741 28.402 2;3 0.00078642 16156 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.29 53.163 55014000 0 0 0 2551700 2666800 2149600 23981000 0 7926200 0 6190500 6379300 0 0 0 0 0 0 0 0 0 3168900 0 0 15162 246 14672 285380;285381;285382;285383;285384;285385;285386;285387;285388 175436;175437;175438;175439;175440;175441;175442;175443 175439 7 NAGQTCVCANR Unmodified 1249.5292 0.52918821 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.84 11.656 2 2.421E-35 2829 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 291.42 262.26 806230000 168740000 132900000 121140000 0 0 0 82493000 76214000 74628000 0 0 0 13571000 19010000 14245000 0 0 0 33878000 30198000 39214000 0 0 0 15163 1258 14673 285389;285390;285391;285392;285393;285394;285395;285396;285397;285398;285399;285400 175444;175445;175446;175447;175448;175449;175450;175451;175452;175453;175454;175455 175451 12 NAHLVSTVVSGK Unmodified 1210.667 0.66698555 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 14.447 15.151 2 3.496E-14 4890 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 165.63 158.81 107130000 0 0 0 0 0 0 0 47104000 20425000 0 0 0 0 0 0 0 0 0 39599000 0 0 0 0 0 15164 1586 14674 285401;285402;285403;285404;285405;285406 175456;175457;175458;175459;175460;175461 175460 6 NAHLVSTVVSGKEEEGAK Unmodified 1853.9483 0.94830537 1586 P46837 yhgF Protein YhgF yes yes 0 0 1 By MS/MS 1 13.887 14.685 3 3.0708E-08 4614 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.087 76.267 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15165 1586 14675 285407 175462 175462 1 NAIAHTVDR Unmodified 995.51484 0.514842 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 10.874 11.799 2 0.059343 2215 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 51.346 33.981 54734000 0 0 12083000 3452300 2697200 2996700 0 11921000 8519400 0 0 0 0 0 0 0 0 0 0 13064000 0 0 0 0 15166 1964 14676 285408;285409;285410;285411;285412;285413;285414 175463;175464;175465 175463 3 NAIASVK Unmodified 701.40719 0.40718903 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.909 12.501 2 0.023497 3372 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 73.616 39.878 613100000 0 0 0 2166300 1178400 633720 84640000 89433000 91977000 3446500 3719400 3350800 0 65398000 80100000 4070800 0 2598600 90349000 0 82104000 2414300 2408200 3114800 15167 1117 14677 285415;285416;285417;285418;285419;285420;285421;285422;285423;285424;285425;285426;285427;285428;285429;285430;285431;285432 175466;175467;175468;175469;175470;175471 175466 6 NAIDWLSR Unmodified 973.49813 0.49812931 1012 P0AGE6 chrR Chromate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.74 35.083 2 9.3119E-05 17335 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 162.5 125.92 1308100000 91526000 78330000 74614000 0 0 0 163030000 175820000 185580000 0 0 0 99781000 80153000 72318000 0 0 0 102550000 93112000 91346000 0 0 0 15168 1012 14678 285433;285434;285435;285436;285437;285438;285439;285440;285441;285442;285443;285444 175472;175473;175474;175475;175476;175477;175478;175479;175480;175481;175482;175483 175472 12 NAIGNYITSGELPDENAR Unmodified 1932.9177 0.91773352 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 36.997 35.34 2;3 1.0066E-55 17436 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 289.38 276.37 765150000 63835000 60521000 63487000 0 0 0 62974000 59930000 56885000 0 0 0 52276000 53149000 51349000 0 0 0 76783000 82212000 81748000 0 0 0 15169 828 14679 285445;285446;285447;285448;285449;285450;285451;285452;285453;285454;285455;285456;285457;285458;285459;285460;285461;285462;285463;285464;285465;285466;285467;285468 175484;175485;175486;175487;175488;175489;175490;175491;175492;175493;175494;175495;175496 175484 13 NAIIFSPHPR Unmodified 1150.6247 0.6247268 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 20.036 20.273 2;3 7.015E-09 7375 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 208.37 198.98 8882900000 699900000 670880000 589410000 209380000 199010000 194770000 1143100000 714790000 1144100000 181110000 149330000 140940000 374150000 341480000 335130000 13700000 10028000 13026000 401590000 326310000 397930000 213660000 206360000 212810000 15170 548 14680 285469;285470;285471;285472;285473;285474;285475;285476;285477;285478;285479;285480;285481;285482;285483;285484;285485;285486;285487;285488;285489;285490;285491;285492;285493;285494;285495;285496;285497;285498;285499;285500;285501;285502;285503;285504;285505;285506;285507;285508;285509;285510;285511;285512;285513;285514;285515;285516 175497;175498;175499;175500;175501;175502;175503;175504;175505;175506;175507;175508;175509;175510;175511;175512;175513;175514;175515;175516;175517;175518;175519;175520;175521;175522;175523;175524;175525;175526;175527;175528;175529;175530;175531;175532;175533;175534;175535;175536;175537;175538;175539;175540;175541;175542 175542 45 NAILIVEFAK Unmodified 1116.6543 0.6542956 1365 P31224;P24181 acrB;acrF Multidrug efflux pump subunit AcrB;Multidrug export protein AcrF yes no 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 43.788 42.254 2 0.015933 20606 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 62.463 58.529 68756000 2906000 0 2761700 0 0 0 7810700 6780200 7115000 0 0 0 5698400 7100400 5306300 0 0 0 8238500 7754500 7284500 0 0 0 15171 1365 14681 285517;285518;285519;285520;285521;285522;285523;285524;285525;285526;285527 175543 175543 1 NAIPSGIPDESVPLYLQR Unmodified 1968.0316 0.031641065 1950 Q2M7R5 yibT Uncharacterized protein YibT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 1 1 1 46.465 44.997 2;3 2.9835E-17 21822 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 193.81 193.81 491920000 67707000 56576000 51326000 3812500 4017700 3762900 66045000 52722000 50739000 0 0 2740200 27292000 25256000 24237000 0 0 1779500 20032000 16504000 15863000 0 0 1514100 15172 1950 14682 285528;285529;285530;285531;285532;285533;285534;285535;285536;285537;285538;285539;285540;285541;285542;285543;285544;285545;285546;285547;285548;285549;285550;285551;285552;285553;285554;285555;285556;285557;285558 175544;175545;175546;175547;175548;175549;175550;175551;175552;175553;175554;175555;175556 175553 12 NAISAVPVMPWR Unmodified 1339.7071 0.70707622 842 P0AE91 creA Protein CreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.304 42.609 2 1.2459E-06 20838 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.72 138.57 263420000 29536000 27045000 26035000 0 0 0 26749000 27749000 23001000 3880100 3216500 3394300 15464000 11926000 13078000 0 0 0 19108000 15208000 18034000 0 0 0 15173 842 14683 285559;285560;285561;285562;285563;285564;285565;285566;285567;285568;285569;285570;285571;285572;285573 175557;175558;175559;175560;175561;175562;175563;175564;175565;175566;175567 175563 10 NAITTGSR Unmodified 818.42463 0.42463001 1672 P64463 ydfZ Putative selenoprotein YdfZ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.664 11.438 2 0.0010178 2729 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.41 93.775 1413600000 90634000 65408000 76291000 0 0 0 359890000 315830000 335440000 0 0 0 0 0 0 0 0 0 59847000 56708000 53584000 0 0 0 15174 1672 14684 285574;285575;285576;285577;285578;285579;285580;285581;285582 175568;175569;175570 175569 3 NALATIAQAQEESLGDNKPADDLLNLEGVDR Unmodified 3279.6219 0.62189243 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 51.07 49.96 3;4 1.7485E-109 24214 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 322.32 320.29 7416500000 469250000 352150000 194790000 0 0 0 184560000 89930000 80311000 254260000 197680000 219600000 314810000 260180000 310610000 771850000 693700000 842080000 316720000 291000000 263210000 492710000 427810000 389250000 15175 935 14685 285583;285584;285585;285586;285587;285588;285589;285590;285591;285592;285593;285594;285595;285596;285597;285598;285599;285600;285601;285602;285603;285604;285605;285606;285607;285608;285609;285610;285611;285612;285613;285614;285615;285616;285617;285618;285619;285620;285621 175571;175572;175573;175574;175575;175576;175577;175578;175579;175580;175581;175582;175583;175584;175585;175586;175587;175588;175589;175590;175591;175592;175593;175594;175595 175592 25 NALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFK Unmodified 3853.9334 0.93339017 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 3 3 3 1 1 1 4 4 4 1 1 3 3 4 52.097 51.122 3;4;5 3.0411E-118 20287 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 327.98 326.53 10823000000 27619000 24994000 23541000 5803700 4497000 6740200 9843000 9715600 10344000 962110000 997220000 818050000 18122000 13754000 16589000 316810000 310990000 455100000 0 21980000 24478000 2209800000 2488100000 2046600000 15176 935 14686 285622;285623;285624;285625;285626;285627;285628;285629;285630;285631;285632;285633;285634;285635;285636;285637;285638;285639;285640;285641;285642;285643;285644;285645;285646;285647;285648;285649;285650;285651;285652;285653;285654;285655;285656;285657;285658;285659;285660;285661;285662;285663;285664;285665;285666 175596;175597;175598;175599;175600;175601;175602;175603;175604;175605;175606;175607;175608;175609;175610;175611;175612;175613;175614;175615;175616;175617;175618;175619;175620;175621;175622 175618 27 NALAYLAYSDK Unmodified 1227.6136 0.61355299 842 P0AE91 creA Protein CreA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.407 32.873 2 2.4687E-05 15994 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 134.23 128 167040000 19918000 23337000 20163000 0 936320 0 15751000 14977000 13093000 0 1499400 0 8320000 9210200 6047500 0 0 0 11345000 10962000 11476000 0 0 0 15177 842 14687 285667;285668;285669;285670;285671;285672;285673;285674;285675;285676;285677;285678;285679;285680 175623;175624;175625;175626;175627;175628;175629 175624 7 NALAYLAYSDKVVEGSPK Unmodified 1923.9942 0.99419293 842 P0AE91 creA Protein CreA yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 37.931 35.78 3 0.16041 12473 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 16.654 16.623 21421000 0 0 0 2425300 0 2809300 0 0 0 3600300 2570000 2620800 0 0 0 0 0 0 0 0 0 2713700 3006200 1675800 15178 842 14688 285681;285682;285683;285684;285685;285686;285687;285688 175630 175630 1 NALDCALWDLAAR Unmodified 1487.7191 0.71909747 1596 P51981 ycjG L-Ala-D/L-Glu epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.44 51.192 2 9.5005E-07 24156 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 152.7 138.49 168320000 20189000 21781000 17931000 0 0 0 17103000 19808000 16826000 0 0 0 7688600 8602300 9248300 0 0 0 9896000 10409000 8839600 0 0 0 15179 1596 14689 285689;285690;285691;285692;285693;285694;285695;285696;285697;285698;285699;285700 175631;175632;175633;175634;175635;175636;175637;175638 175638 5 NALDKIPLDADLR Unmodified 1452.7936 0.79364262 469 P0A8X0 yjgA UPF0307 protein YjgA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.978 33.518 3 0.00017746 15968 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.352 59.3 92300000 15730000 14493000 15371000 0 0 333200 8348800 5599100 7235000 0 0 0 4568700 3643800 4748500 0 0 0 0 6222500 6005900 0 0 0 15180 469 14690 285701;285702;285703;285704;285705;285706;285707;285708;285709;285710;285711;285712 175639;175640;175641 175640 3 NALEVEGLTK Unmodified 1072.5764 0.57643921 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.335 25.227 2 0.00032019 10859 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 110.76 78.996 656770000 46425000 46187000 41604000 692070 441550 501960 46224000 45723000 46454000 0 0 0 60315000 60774000 61935000 0 0 0 68290000 60832000 70374000 0 0 0 15181 558 14691 285713;285714;285715;285716;285717;285718;285719;285720;285721;285722;285723;285724;285725;285726;285727 175642;175643;175644;175645;175646;175647;175648;175649;175650 175649 4 NALFGIIQGSVYEDLRDISVK Unmodified 2336.2376 0.23761109 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 54.986 54.418 3 1.0989E-34 21179 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 210.17 207.95 352560000 0 5604800 0 0 0 0 0 0 293440 0 0 0 0 0 0 83757000 149530000 113380000 0 0 0 0 0 0 15182 395 14692 285728;285729;285730;285731;285732 175651;175652;175653 175651 3 NALPEGYAPAK Unmodified 1129.5768 0.57677356 1710 P67095 yfcE Phosphodiesterase YfcE yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.391 19.827 2 0.00025046 7618 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 98.033 91.394 699860000 88938000 67048000 67674000 1395200 1298800 1148500 60095000 56580000 55928000 0 0 2310500 47738000 56839000 39320000 0 0 0 49713000 53631000 47145000 3057500 0 0 15183 1710 14693 285733;285734;285735;285736;285737;285738;285739;285740;285741;285742;285743;285744;285745;285746;285747;285748;285749 175654;175655;175656;175657;175658;175659;175660;175661;175662 175658 7 NALQALGPEGGEIILR Unmodified 1649.9101 0.91006937 924 P0AFB5 glnL Nitrogen regulation protein NR(II) yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 44.812 42.96 2 4.0717E-05 17156 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 87.001 74.787 19575000 5574600 0 5252600 0 0 0 0 0 0 2007800 2050900 2365600 0 2323200 0 0 0 0 0 0 0 0 0 0 15184 924 14694 285750;285751;285752;285753;285754;285755 175663;175664 175663 1 NALQELIIDGIK Unmodified 1325.7555 0.7554662 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 1 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 1 1 1 50.122 48.868 2;3 1.4393E-05 24506 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.95 138.73 4373700000 245240000 255120000 226000000 5416200 7031800 5191400 369830000 331780000 319390000 7980400 6089300 8214700 356130000 320100000 360320000 3519700 3580700 2904300 538750000 485410000 485060000 10891000 10388000 9360700 15185 1236 14695 285756;285757;285758;285759;285760;285761;285762;285763;285764;285765;285766;285767;285768;285769;285770;285771;285772;285773;285774;285775;285776;285777;285778;285779;285780;285781;285782;285783;285784;285785;285786;285787;285788;285789;285790;285791;285792;285793;285794;285795;285796;285797;285798;285799;285800;285801;285802;285803;285804 175665;175666;175667;175668;175669;175670;175671;175672;175673;175674;175675;175676;175677;175678;175679;175680;175681;175682;175683;175684;175685;175686;175687;175688;175689;175690;175691;175692;175693 175684 28 NALQFCSR Unmodified 994.46545 0.46544897 1954 Q46810 mocA Molybdenum cofactor cytidylyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 19.718 19.71 2 0.0026172 6201 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 98.997 88.69 9487800 0 0 0 0 0 0 0 0 0 2296800 2127400 2265000 0 0 0 0 0 0 0 2798600 0 0 0 0 15186 1954 14696 285805;285806;285807;285808 175694;175695 175694 2 NALQLLHFWNAEIPLAQGAAVPLVR Unmodified 2740.5177 0.51768954 1200 P22564 rihC Non-specific ribonucleoside hydrolase RihC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 54.906 53.431 3 4.95E-22 26429 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 161.47 154.96 423440000 83145000 66407000 79676000 0 0 0 31258000 27303000 26531000 0 0 0 16710000 0 17997000 0 0 0 29369000 25684000 19361000 0 0 0 15187 1200 14697 285809;285810;285811;285812;285813;285814;285815;285816;285817;285818;285819 175696;175697;175698 175698 3 NALTTLPMGGGK Unmodified 1158.6067 0.60669348 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 2 1 1 1 1 1 2 1 1 28.226 27.04 2 0.0013312 12220 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 67.334 60.114 843080000 246390000 208460000 212350000 932930 0 0 25458000 29563000 0 0 0 0 21122000 17092000 23208000 0 0 0 28601000 0 29901000 0 0 0 15188 26 14698 285820;285821;285822;285823;285824;285825;285826;285827;285828;285829;285830;285831;285832 175699;175700 175700 0 NAMPLLNR Unmodified 927.49602 0.49602082 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.427 24.338 2 0.00017816 10984 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 154.11 134.27 1417900000 74101000 75911000 70416000 0 0 0 107420000 94437000 103220000 0 0 0 142600000 149120000 126560000 0 0 0 156760000 148710000 168640000 0 0 0 15189 1283 14699 285833;285834;285835;285836;285837;285838;285839;285840;285841;285842;285843;285844 175701;175702;175703;175704;175705;175706;175707;175708;175709;175710;175711;175712 175704 12 NAMSIANVER Unmodified 1103.5393 0.53934219 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 21.516 21.704 2 2.227E-09 8596 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 198.58 137.99 696300000 81042000 74791000 68278000 0 0 0 86843000 64086000 75464000 0 0 0 89689000 81684000 74418000 0 0 0 0 0 0 0 0 0 15190 1252 14700 285845;285846;285847;285848;285849;285850;285851;285852;285853 175713;175714;175715;175716;175717;175718;175719;175720 175718 8 NANDGISVAQTTEGALSEINNNLQR Unmodified 2628.2739 0.27394961 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 48.514 47.237 2;3 2.7979E-111 22944 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 342.42 334.64 147130000 48493000 47290000 35455000 4651200 4948200 6292000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15191 96 14701 285854;285855;285856;285857;285858;285859;285860;285861;285862 175721;175722;175723;175724;175725;175726;175727;175728 175728 8 NANLVVVMGGNAAEAHPVGFR Unmodified 2122.0742 0.074191356 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 37.241 35.329 3 1.2984E-05 14347 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 87.49 83.996 79070000 0 0 5958800 4316100 3827900 4365600 0 0 0 5497600 4923100 0 0 0 0 0 0 0 11559000 16296000 15796000 2909700 0 3619900 15192 1393 14702 285863;285864;285865;285866;285867;285868;285869;285870;285871;285872;285873 175729;175730;175731;175732;175733;175734;175735 175729 7 NANSTWLNGQPFDK Unmodified 1590.7427 0.74266969 1231 P23917 mak Fructokinase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 34.223 32.781 2 0.0025039 15719 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.605 78.572 49383000 5073500 6895700 5205800 0 0 0 4908600 5481300 4927700 0 0 0 3993500 2719500 3538000 0 0 0 0 0 6639400 0 0 0 15193 1231 14703 285874;285875;285876;285877;285878;285879;285880;285881;285882;285883 175736 175736 1 NAPLLESWQR Unmodified 1212.6251 0.62512073 1327 P29013 ycgB Uncharacterized protein YcgB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 34.087 32.64 2 1.0065E-08 15478 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 182.69 170.46 131310000 22586000 22083000 20064000 0 0 0 17153000 14084000 14950000 0 0 0 4049100 3958100 5501900 0 0 0 0 6878700 0 0 0 0 15194 1327 14704 285884;285885;285886;285887;285888;285889;285890;285891;285892;285893 175737;175738;175739;175740 175739 3 NAPPPTKPVETQTQSTVPDKNDR Unmodified 2519.2616 0.26159401 794 P0ADN6 yifL Uncharacterized lipoprotein YifL yes yes 0 0 2 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 1 1 2 1 1 1 2 2 2 1 12.42 13.014 3;4 9.4693E-11 3740 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.48 126.32 302990000 14545000 19511000 16115000 4580200 0 3486200 25554000 27124000 24947000 11054000 12365000 12073000 17000000 8243400 10185000 3138200 1284800 1765700 18657000 30253000 30124000 0 7911900 3069400 15195 794 14705 285894;285895;285896;285897;285898;285899;285900;285901;285902;285903;285904;285905;285906;285907;285908;285909;285910;285911;285912;285913;285914;285915;285916;285917;285918;285919;285920;285921;285922;285923;285924;285925;285926;285927;285928;285929 175741;175742;175743;175744;175745;175746;175747;175748 175745 8 NAPSYTAQTLK Unmodified 1192.6088 0.60880197 312 P0A752 nadD Nicotinate-nucleotide adenylyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.73 17.21 2 6.93E-05 5751 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 125.71 109.51 121970000 9880000 0 0 0 0 0 6479900 7414800 6243400 9385300 6306900 3151000 12325000 8498900 7421700 4533100 2474000 1499600 12830000 13428000 10103000 0 0 0 15196 312 14706 285930;285931;285932;285933;285934;285935;285936;285937;285938;285939;285940;285941;285942;285943;285944;285945 175749;175750;175751;175752;175753;175754;175755 175753 7 NAQPDTLDAVLAK Unmodified 1354.7092 0.70924429 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.809 31.307 2 5.5129E-05 14805 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 111.06 85.249 1073200000 72287000 67364000 57399000 804250 657130 825810 80763000 69447000 71053000 0 0 1756000 99332000 95338000 93784000 0 0 0 117930000 120500000 122210000 0 0 1753700 15197 311 14707 285946;285947;285948;285949;285950;285951;285952;285953;285954;285955;285956;285957;285958;285959;285960;285961;285962 175756;175757;175758;175759;175760;175761;175762;175763;175764;175765 175760 10 NAQQGYEK Unmodified 936.43011 0.43010932 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 5.966 6.8237 2 0.00029228 1423 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 147.52 119.99 114510000 21619000 22099000 22280000 0 0 0 21390000 0 0 0 0 0 4030600 3849200 5589400 0 0 0 4978600 4133300 4544400 0 0 0 15198 1420 14708 285963;285964;285965;285966;285967;285968;285969;285970;285971;285972 175766;175767;175768;175769;175770;175771 175768 6 NAQYDALLNQATQITDATK Unmodified 2078.028 0.02801225 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 45.763 44.28 2;3 4.0244E-29 21997 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 259.1 249.97 214930000 5767700 5308200 0 0 0 0 21630000 26359000 24669000 0 0 0 22498000 20434000 25304000 0 0 0 20212000 24024000 18721000 0 0 0 15199 1961 14709 285973;285974;285975;285976;285977;285978;285979;285980;285981;285982;285983;285984;285985;285986;285987;285988;285989;285990;285991;285992 175772;175773;175774;175775;175776;175777;175778;175779;175780 175773 9 NASLFNK Unmodified 792.413 0.41300269 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.229 16.872 2 0.010727 5870 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.512 74.791 353750000 47844000 49115000 0 0 0 0 36288000 41235000 38025000 0 0 0 18466000 21308000 16052000 1384800 789730 1152900 31280000 25934000 24873000 0 0 0 15200 1233 14710 285993;285994;285995;285996;285997;285998;285999;286000;286001;286002;286003;286004;286005;286006 175781;175782;175783;175784;175785;175786;175787;175788;175789;175790 175782 10 NASMAVLR Unmodified 860.45382 0.45382165 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.92 18.519 2 0.065294 5433 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 56.547 29.38 779100000 151760000 173290000 161930000 1510300 1523200 1354000 0 0 0 0 0 0 0 0 23671000 0 0 0 92889000 99490000 67389000 0 746740 3545400 15201 65 14711 286007;286008;286009;286010;286011;286012;286013;286014;286015;286016;286017;286018 175791 175791 1 NASVNREELFITTK Unmodified 1620.8471 0.84713476 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 1 2 2 2 2 1 2 2 2 2 24.21 23.307 2;3 1.6797E-19 10010 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 215.72 199.47 416150000 56170000 55975000 59196000 0 0 526570 58821000 61043000 54484000 0 0 0 10729000 8019500 7204300 0 0 0 16075000 13893000 14010000 0 0 0 15202 1960 14712 286019;286020;286021;286022;286023;286024;286025;286026;286027;286028;286029;286030;286031;286032;286033;286034;286035;286036;286037;286038;286039;286040;286041;286042 175792;175793;175794;175795;175796;175797;175798;175799;175800;175801;175802;175803;175804;175805 175804 14 NATGCSAEQAEAALIACER Unmodified 2020.8942 0.89423766 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 33.483 32.053 2 1.0857E-17 15555 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 173.44 159.63 75062000 7586500 6518500 5501000 0 0 0 8950100 8865400 5581500 0 0 0 6928800 5112500 5688500 0 0 0 0 6489100 7840100 0 0 0 15203 1867 14713 286043;286044;286045;286046;286047;286048;286049;286050;286051;286052;286053 175806 175806 1 NATLEVAEALER Unmodified 1314.6779 0.67794416 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 36.278 34.625 2 0.00041053 16610 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83.081 70.845 88028000 15551000 13898000 9550000 0 0 0 0 0 0 2041400 2608500 0 5113300 6335900 7222400 0 0 0 0 13785000 11922000 0 0 0 15204 544 14714 286054;286055;286056;286057;286058;286059;286060;286061;286062;286063 175807;175808;175809 175808 1 NATLIEAIK Unmodified 971.56515 0.56514624 1514 P39187 ytfJ Uncharacterized protein YtfJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.38 27.06 1;2 0.0013655 12278 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.948 56.338 429930000 83208000 91505000 90692000 1749500 2098700 1837400 15342000 19874000 19709000 0 5278300 0 0 14307000 0 0 0 0 28578000 21663000 22607000 4098100 3448300 3934100 15205 1514 14715 286064;286065;286066;286067;286068;286069;286070;286071;286072;286073;286074;286075;286076;286077;286078;286079;286080;286081;286082;286083 175810;175811;175812;175813;175814;175815;175816;175817;175818;175819 175814 8 NAVDEEIER Unmodified 1073.4989 0.49891717 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.854 16.67 2 0.0004588 5472 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 109.71 90.237 112410000 7315700 8273500 6254700 0 0 0 9799100 10860000 9661700 0 0 0 8346500 7051900 8090300 0 0 0 11814000 11718000 13222000 0 0 0 15206 1197 14716 286084;286085;286086;286087;286088;286089;286090;286091;286092;286093;286094;286095 175820;175821 175821 2 NAVDNASR Unmodified 845.39914 0.39914354 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 1 1 1 1 1 2 2 2 2 1 2 5.4424 6.3228 1;2 0.00039611 1175 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.52 110.21 1306200000 207530000 206470000 179220000 1003600 1198400 0 175640000 154450000 166070000 0 0 0 42810000 36391000 39040000 0 0 0 43083000 10527000 42753000 0 0 0 15207 423 14717 286096;286097;286098;286099;286100;286101;286102;286103;286104;286105;286106;286107;286108;286109;286110;286111;286112;286113;286114;286115;286116;286117 175822;175823;175824;175825;175826 175823 5 NAVENHFDTSYELESLLEQR Unmodified 2393.1135 0.11353279 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 47.416 46.064 2;3 3.939E-128 22836 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 399.44 379.76 2288400000 143530000 132040000 128810000 5255100 6765600 5986800 177070000 173180000 144640000 6205700 6199400 6233200 209920000 184670000 195660000 9463800 8003000 10110000 258290000 244290000 216990000 5389000 5093600 4644400 15208 583 14718 286118;286119;286120;286121;286122;286123;286124;286125;286126;286127;286128;286129;286130;286131;286132;286133;286134;286135;286136;286137;286138;286139;286140;286141;286142;286143;286144;286145;286146;286147;286148;286149;286150;286151;286152;286153 175827;175828;175829;175830;175831;175832;175833;175834;175835;175836;175837;175838;175839;175840;175841;175842;175843;175844;175845;175846;175847;175848;175849;175850;175851;175852;175853;175854;175855;175856;175857;175858;175859;175860 175836 31 NAVIEAAER Unmodified 971.50361 0.50360861 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.442 16.003 2 2.6369E-05 5395 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 155.1 120.28 2575100000 176330000 163260000 137210000 6259400 5672600 4987100 253750000 234290000 209780000 24132000 21417000 21208000 178680000 154650000 167780000 10401000 9615200 9763000 261520000 247870000 250990000 9434500 7887600 8250900 15209 1227 14719 286154;286155;286156;286157;286158;286159;286160;286161;286162;286163;286164;286165;286166;286167;286168;286169;286170;286171;286172;286173;286174;286175;286176;286177 175861;175862;175863;175864;175865;175866;175867;175868;175869;175870;175871;175872 175865 11 NAVNAELTMAR Unmodified 1188.5921 0.59210605 110 P05458 ptrA Protease 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 23.058 22.32 2 0.048884 10072 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 61.65 56.954 81231000 0 0 0 0 0 0 9436900 7428700 8059200 0 0 0 7027200 7135000 7544900 0 0 0 10846000 13294000 10459000 0 0 0 15210 110 14720 286178;286179;286180;286181;286182;286183;286184;286185;286186 175873;175874;175875;175876 175873 0 NAVPTQSILTITSNVVYGQK Unmodified 2132.1477 0.14773345 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1 50.137 48.835 2;3 3.0145E-05 23045 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.35 105.62 32639000 0 0 0 0 0 0 0 0 0 0 0 0 9451800 7945400 3208400 0 0 0 4130600 4614700 3288200 0 0 0 15211 1559 14721 286187;286188;286189;286190;286191;286192;286193;286194 175877;175878 175877 2 NAVTEGR Unmodified 745.37187 0.37186616 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 8.2984 9.0356 2 0.0028019 1868 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.63 82.105 37815000 12962000 11519000 13216000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 119410 0 0 0 15212 1935 14722 286195;286196;286197;286198 175879;175880;175881 175881 3 NAVTEGRK Unmodified 873.46683 0.46682918 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 4.7429 5.8302 2 0.00094464 858 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 124.59 81.528 24358000 0 0 0 8736600 7292400 8329300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15213 1935 14723 286199;286200;286201 175882;175883;175884 175884 3 NAVWAAIK Unmodified 871.49159 0.49158736 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 27.313 26.233 1;2 0.010309 11334 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 78.616 65.277 301450000 37565000 35390000 30835000 0 0 0 21657000 24324000 21435000 0 0 0 17560000 17449000 18650000 0 0 0 23940000 28987000 23659000 0 0 0 15214 740 14724 286202;286203;286204;286205;286206;286207;286208;286209;286210;286211;286212;286213;286214;286215;286216;286217;286218;286219;286220;286221;286222 175885;175886;175887;175888;175889;175890;175891;175892;175893;175894;175895 175894 9 NAWLALER Unmodified 971.51886 0.51886475 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 34.993 33.141 2 0.017208 16221 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 67.277 50.351 23733000 0 0 0 0 0 0 8078500 7671100 7983100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15215 1300 14725 286223;286224;286225 175896;175897 175896 2 NAYGILGGIPQSEFQHATIAK Unmodified 2214.1433 0.14331678 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 2 2 2 2 2 2 1 1 1 1 40.974 39.187 2;3 2.8148E-10 19598 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 170.74 170.04 823270000 0 0 8915300 0 0 0 190540000 175000000 177230000 0 0 0 82122000 82505000 88749000 0 0 0 6177200 10212000 0 948170 0 863950 15216 520 14726 286226;286227;286228;286229;286230;286231;286232;286233;286234;286235;286236;286237;286238;286239;286240;286241;286242 175898;175899;175900;175901;175902;175903;175904;175905 175898 8 NCDQTGGLSGR Unmodified 1163.4989 0.49893394 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 11.48 12.217 2 0.012747 3175 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 62.823 62.823 27025000 7740800 6157500 8343700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4783000 0 0 0 15217 335 14727 286243;286244;286245;286246 175906;175907;175908 175908 0 NCDQTGGLSGRPLQLK Unmodified 1742.8734 0.87336628 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.175 21.334 3 0.00013553 6249 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 69.331 67.348 187780000 14927000 13338000 14315000 13285000 13813000 13639000 15947000 11612000 13432000 0 3869200 5168400 5856900 6266900 4092100 0 0 0 0 10695000 9497900 7513800 5071300 5439100 15218 335 14728 286247;286248;286249;286250;286251;286252;286253;286254;286255;286256;286257;286258;286259;286260;286261;286262;286263;286264;286265 175909;175910;175911 175911 3 NCDTSHYMENK Unmodified 1397.534 0.53399882 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 1 2 1 2 2 2 2 2 2 1 1 1 2 3 2 2 2 2 11.452 12.054 2;3 1.6571E-14 3152 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 173.64 173.64 455050000 34489000 31879000 23750000 9962100 0 9789000 9085800 13398000 8570400 36725000 32252000 31448000 18391000 20247000 13065000 4706800 6362800 7498400 27154000 28751000 18125000 22646000 20337000 26415000 15219 252 14729 286266;286267;286268;286269;286270;286271;286272;286273;286274;286275;286276;286277;286278;286279;286280;286281;286282;286283;286284;286285;286286;286287;286288;286289;286290;286291;286292;286293;286294;286295;286296;286297;286298;286299;286300;286301;286302;286303;286304;286305;286306;286307 175912;175913;175914;175915;175916;175917;175918;175919 175913 8 NCGKPLHSAFNDEIPAIVDVFR Unmodified 2498.2376 0.23762787 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 3 3 3 1 2 2 2 2 2 46.011 44.569 2;3;4 3.1818E-34 21743 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 246.95 237.67 967930000 299220000 286190000 291350000 0 0 0 15704000 22171000 24337000 0 0 0 9722200 11056000 8184900 0 0 0 0 0 0 0 0 0 15220 1925 14730 286308;286309;286310;286311;286312;286313;286314;286315;286316;286317;286318;286319;286320;286321;286322;286323;286324;286325;286326;286327 175920;175921;175922;175923;175924;175925;175926 175924 7 NCGSLAAAAATLHQTQSALSHQFSDLEQR Unmodified 3111.4792 0.47920814 516 P0A9F9 metR HTH-type transcriptional regulator MetR yes yes 0 0 0 By MS/MS 1 43.3 43.513 4 1.7921E-08 15576 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 109.41 107.33 8767300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8767300 0 0 0 0 0 0 15221 516 14731 286328 175927 175927 1 NCSLAVLNSGSLTDNSK Unmodified 1778.8469 0.84687676 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.974 31.534 2 5.3411E-76 15231 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 337.53 322.33 228870000 23359000 19585000 18326000 0 0 0 24397000 20480000 23268000 0 0 0 17418000 13999000 15996000 0 0 0 17905000 19353000 14788000 0 0 0 15222 801 14732 286329;286330;286331;286332;286333;286334;286335;286336;286337;286338;286339;286340 175928;175929;175930;175931;175932;175933;175934;175935;175936;175937;175938;175939 175929 12 NCTDDVWVYDLR Unmodified 1554.6773 0.67729224 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.254 41.739 2 2.9795E-06 20371 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.36 128.41 144030000 8781500 6223300 6949500 0 0 0 11020000 11169000 10034000 0 0 0 12763000 10584000 12498000 0 0 0 19238000 18737000 16027000 0 0 0 15223 194 14733 286341;286342;286343;286344;286345;286346;286347;286348;286349;286350;286351;286352 175940;175941;175942;175943;175944;175945;175946 175941 7 NCVNPHVAD Unmodified 1024.4396 0.43962815 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.118 12.95 2 0.0039374 3636 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.809 79.017 836550000 97180000 89636000 90705000 0 0 0 70392000 71593000 63337000 0 0 0 64989000 59411000 54087000 0 0 0 57776000 58370000 59071000 0 0 0 15224 1485 14734 286353;286354;286355;286356;286357;286358;286359;286360;286361;286362;286363;286364 175947;175948;175949 175949 3 NDAADLGAAGGMGGMGGMGGMM Unmodified 1927.7355 0.73549387 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 1 1 1 1 2 2 2 2 3 2 1 1 1 53.3 51.881 2;3 6.9521E-49 25618 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 221.77 221.77 1029100000 153960000 150460000 129460000 5257600 3679100 4989700 85683000 6507900 4032500 4966500 4978400 5835700 176500000 125340000 127270000 0 0 0 9594500 9721100 9411700 4202500 3591600 3694700 15225 240 14735 286365;286366;286367;286368;286369;286370;286371;286372;286373;286374;286375;286376;286377;286378;286379;286380;286381;286382;286383;286384;286385;286386;286387;286388;286389;286390;286391;286392;286393;286394;286395;286396;286397 175950;175951;175952;175953;175954;175955;175956;175957;175958;175959;175960;175961;175962;175963;175964;175965;175966 175952 17 NDAAVLLVDHQAGLLSLVR Unmodified 2003.1164 0.11637375 1179 P21367 ycaC Uncharacterized protein YcaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 1 1 1 50.59 49.164 2;3 1.3381E-17 24168 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 161.65 160.08 739080000 213550000 192130000 181800000 0 0 0 34492000 33856000 34064000 0 2425400 0 5370900 5531500 7466800 0 0 0 9106700 11564000 7724400 0 0 0 15226 1179 14736 286398;286399;286400;286401;286402;286403;286404;286405;286406;286407;286408;286409;286410;286411;286412;286413;286414;286415;286416 175967;175968;175969;175970;175971;175972;175973;175974 175970 6 NDAMHDPMVNESYCETFGWVSK Unmodified 2616.0719 0.071944029 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 43.823 42.329 2;3 2.5626E-15 20559 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 180.88 178.64 528700000 125360000 115050000 101850000 1698300 0 1562700 20983000 19856000 23655000 0 0 0 14788000 12914000 13860000 0 0 0 25772000 26368000 24985000 0 0 0 15227 334 14737 286417;286418;286419;286420;286421;286422;286423;286424;286425;286426;286427;286428;286429;286430;286431;286432;286433 175975;175976;175977;175978;175979;175980;175981;175982;175983;175984 175981 9 NDANDTR Unmodified 804.33621 0.33620893 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 5.3528 6.0854 2 0.062465 940 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.76 50.454 6747300 2531400 2490700 1725300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15228 1233 14738 286434;286435;286436 175985;175986;175987 175986 3 NDAPGETVSYQVANAQYR Unmodified 1981.913 0.91298249 810 P0ADU7 yqiB Uncharacterized protein YqiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 27.153 27.175 3 1.3576E-06 9122 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 91.616 89.699 30807000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11559000 9036200 10212000 0 0 0 0 0 0 15229 810 14739 286437;286438;286439 175988;175989;175990 175988 3 NDDNTWTVTVADLK Unmodified 1590.7526 0.75256567 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.593 40.884 2 1.2189E-19 16006 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 213.16 206.63 180390000 0 0 0 2111100 2055700 1924400 8854100 0 0 6714800 6091900 8465300 6659200 7397700 0 3527400 0 6981800 22945000 22957000 20364000 18251000 20135000 14953000 15230 1435 14740 286440;286441;286442;286443;286444;286445;286446;286447;286448;286449;286450;286451;286452;286453;286454;286455;286456 175991;175992;175993;175994;175995;175996;175997 175996 6 NDDVLGVIALQDTLR Unmodified 1640.8733 0.87334951 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By MS/MS 1 52.941 51.588 2 0.010701 18855 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 61.641 52.637 2493100 0 0 0 0 2493100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15231 1475 14741 286457 175998 175998 0 NDDYLILDAVNNQVYVNPTNEVIDK Unmodified 2877.4032 0.40323245 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 53.982 52.536 2;3 4.9814E-50 25988 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 312.63 302.84 3008500000 188610000 177560000 149180000 0 0 0 225370000 199270000 188170000 8954900 5222800 0 429040000 285080000 300620000 0 0 0 269420000 300530000 281530000 0 0 0 15232 192 14742 286458;286459;286460;286461;286462;286463;286464;286465;286466;286467;286468;286469;286470;286471;286472;286473;286474;286475;286476;286477;286478;286479;286480;286481;286482;286483 175999;176000;176001;176002;176003;176004;176005;176006;176007;176008;176009;176010;176011;176012;176013;176014;176015;176016 176001 18 NDEAFLQQVMK Unmodified 1321.6336 0.63363651 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.172 37.498 2 2.2303E-07 18115 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 196.99 192.53 820140000 69041000 62450000 60991000 0 0 0 65295000 61281000 70753000 0 0 0 76076000 67372000 65842000 0 0 0 71852000 73080000 76109000 0 0 0 15233 57 14743 286484;286485;286486;286487;286488;286489;286490;286491;286492;286493;286494;286495 176017;176018;176019;176020;176021;176022;176023 176019 7 NDEALNSQR Unmodified 1045.4789 0.47885043 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.814 11.714 2 8.9518E-16 2728 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 227.62 215.9 779520000 0 0 89925000 1523300 1574100 1419600 100190000 89748000 91039000 0 0 0 73483000 63887000 61332000 0 0 0 67988000 68407000 68996000 0 0 0 15234 421 14744 286496;286497;286498;286499;286500;286501;286502;286503;286504;286505;286506;286507;286508;286509;286510 176024;176025;176026;176027;176028;176029;176030;176031;176032;176033;176034;176035 176033 12 NDELVAYAR Unmodified 1049.5142 0.5141733 860 P0AEH3 elaA Protein ElaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.663 22.133 2 4.7451E-08 9292 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 193.86 176.9 308930000 21262000 19033000 22914000 0 0 0 50758000 46034000 43978000 0 0 0 13710000 11853000 14295000 0 0 0 22367000 23738000 18988000 0 0 0 15235 860 14745 286511;286512;286513;286514;286515;286516;286517;286518;286519;286520;286521;286522 176036;176037;176038;176039;176040;176041;176042 176041 3 NDFAAMNK Unmodified 909.40145 0.40145173 845 P0AEB7 yoaB RutC family protein YoaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.992 15.791 2 0.0009293 5321 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.16 110.71 490460000 50637000 58615000 47680000 0 0 0 43831000 37749000 37925000 0 0 0 34422000 31442000 32378000 0 0 0 39287000 38978000 37513000 0 0 0 15236 845 14746 286523;286524;286525;286526;286527;286528;286529;286530;286531;286532;286533;286534 176043;176044;176045;176046;176047;176048;176049;176050;176051;176052;176053;176054 176046 12 NDGCHLLFIQCPVCAEK Unmodified 2059.9278 0.92778639 1238 P24188 yceA UPF0176 protein YceA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 36.018 34.511 3 5.2681E-09 16621 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 122.14 121.58 149440000 5173200 7130800 4554500 0 0 0 0 6695200 0 0 0 0 11399000 8990500 12273000 0 0 0 27742000 34349000 30195000 0 0 942390 15237 1238 14747 286535;286536;286537;286538;286539;286540;286541;286542;286543;286544;286545 176055;176056;176057;176058;176059 176055 5 NDGDSQFIR Unmodified 1050.473 0.47303677 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.467 17.956 2 0.00015756 6556 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.27 126.34 284550000 15981000 0 13810000 2165200 1810800 2212200 9140300 8074400 8504200 1282500 0 0 4850400 4914900 4979000 68214000 57417000 53338000 9906900 8032000 8527000 827880 565410 0 15238 1249 14748 286546;286547;286548;286549;286550;286551;286552;286553;286554;286555;286556;286557;286558;286559;286560;286561;286562;286563;286564;286565 176060;176061;176062;176063 176063 4 NDGHAIATIHGK Unmodified 1232.6262 0.62618337 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 2 2 1 2 1 2 2 10.785 11.621 2;3 0.00096779 2834 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 77.867 65.82 161780000 14919000 9476600 10579000 0 0 0 10440000 14268000 15941000 0 0 0 14281000 6466000 12330000 0 0 0 14985000 20971000 17129000 0 0 0 15239 1664 14749 286566;286567;286568;286569;286570;286571;286572;286573;286574;286575;286576;286577;286578;286579;286580;286581;286582 176064;176065;176066;176067;176068;176069 176068 6 NDGPESHFSKR Unmodified 1272.5847 0.58471248 287 P0A6W3 mraY Phospho-N-acetylmuramoyl-pentapeptide-transferase yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 24.264 23.171 2 0.11276 10416 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 41.029 32.166 212380000 0 0 0 0 0 0 55284000 51946000 46707000 0 0 0 0 0 0 0 0 0 18140000 19887000 20415000 0 0 0 15240 287 14750 286583;286584;286585;286586;286587;286588 176070;176071 176070 2 NDGRDADELLAILASK Unmodified 1699.8741 0.87407779 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.492 47.057 3 2.1948E-08 22912 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 112.12 109.98 227930000 0 0 0 1262000 0 0 23118000 17474000 23514000 0 0 1815800 20629000 17421000 15251000 0 0 0 32913000 30259000 31612000 3626500 5292200 3741900 15241 1324 14751 286589;286590;286591;286592;286593;286594;286595;286596;286597;286598;286599;286600;286601;286602 176072;176073;176074;176075;176076;176077;176078;176079;176080 176075 9 NDHFYGK Unmodified 879.38752 0.38751622 759 P0ACZ4 evgA Positive transcription regulator EvgA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 11.021 11.863 2 0.0073613 2945 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.626 77.63 84474000 8094000 0 0 0 0 0 14176000 0 13323000 0 0 0 8406400 9735400 8436700 0 0 0 0 11910000 10393000 0 0 0 15242 759 14752 286603;286604;286605;286606;286607;286608;286609;286610 176081;176082 176082 2 NDHHDGGDDHES Unmodified 1333.4555 0.4555488 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 3.4313 4.3195 3 0.15874 606 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 18.858 18.858 18213000 0 0 0 0 0 0 0 0 0 0 0 0 2202600 2564700 1319500 0 0 0 4177300 3852600 4096700 0 0 0 15243 600 14753 286611;286612;286613;286614;286615;286616 176083;176084 176083 2 NDHLMLAR Unmodified 968.48618 0.48618441 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.471 15.246 2 0.0043811 5150 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.358 84.002 317060000 33314000 25782000 24356000 0 0 0 46569000 0 55734000 0 0 0 29249000 20575000 20907000 0 0 0 20170000 19217000 21190000 0 0 0 15244 283 14754 286617;286618;286619;286620;286621;286622;286623;286624;286625;286626;286627 176085;176086;176087;176088;176089 176087 5 NDIAMGPLINAAALER Unmodified 1667.8665 0.86648999 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 1 2 2 2 2 48.264 46.933 2;3 1.3795E-11 22856 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.99 135.77 2441000000 783540000 64465000 646340000 1537900 1556000 1472200 8923000 100290000 100190000 0 0 0 82474000 8535700 66296000 0 0 0 195310000 199260000 180770000 0 0 0 15245 1264 14755 286628;286629;286630;286631;286632;286633;286634;286635;286636;286637;286638;286639;286640;286641;286642;286643;286644;286645;286646;286647;286648;286649;286650;286651;286652 176090;176091;176092;176093;176094;176095;176096;176097;176098;176099;176100;176101;176102 176097 11 NDIAVLLDVVVNHK Unmodified 1547.8671 0.86714192 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.966 50.719 2;3 1.1966E-10 24730 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 157.56 155.06 478660000 54413000 55993000 51333000 0 0 0 58310000 59398000 54729000 0 0 0 19431000 21616000 15857000 0 0 0 26354000 30178000 31047000 0 0 0 15246 1282 14756 286653;286654;286655;286656;286657;286658;286659;286660;286661;286662;286663;286664;286665;286666;286667;286668;286669;286670;286671;286672;286673;286674;286675;286676 176103;176104;176105;176106;176107;176108;176109;176110;176111;176112;176113;176114;176115 176107 13 NDIEGLATLFSNHIPDYR Unmodified 2074.012 0.011968255 1179 P21367 ycaC Uncharacterized protein YcaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 51.927 50.615 2;3 2.5019E-55 24848 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 340.47 326.81 2085200000 493090000 496160000 449600000 1164200 1041800 0 154650000 117980000 147980000 8104700 10307000 8365000 33931000 35986000 30917000 0 0 0 0 41679000 47104000 1454100 2165600 3537600 15247 1179 14757 286677;286678;286679;286680;286681;286682;286683;286684;286685;286686;286687;286688;286689;286690;286691;286692;286693;286694;286695;286696;286697;286698;286699 176116;176117;176118;176119;176120;176121;176122;176123;176124;176125;176126;176127;176128;176129 176123 12 NDIEILAELTEGGSAVQR Unmodified 1913.9694 0.96943474 759 P0ACZ4 evgA Positive transcription regulator EvgA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 52.826 51.463 2 0.00015041 25021 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 90.334 82.423 61960000 4938200 0 2777300 0 0 0 8323100 5879100 6138500 0 0 0 5408800 4398200 6104200 0 0 0 7042300 6637100 4313400 0 0 0 15248 759 14758 286700;286701;286702;286703;286704;286705;286706;286707;286708;286709;286710 176130;176131;176132;176133;176134 176131 1 NDIGWYSLDEGDNQQER Unmodified 2037.8664 0.86642623 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 39.075 37.031 2 1.2674E-18 18026 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 182.33 181.02 27373000 0 0 0 0 0 0 0 6560700 0 3256600 0 3365400 0 0 0 0 0 0 4004800 5804400 4381200 0 0 0 15249 143 14759 286711;286712;286713;286714;286715;286716 176135;176136 176136 2 NDINHWQECFISDLK Unmodified 1917.8679 0.86794655 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 43.152 41.621 2;3 2.7436E-38 20624 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 232.37 227.09 562760000 119890000 114560000 110260000 677300 637530 0 52125000 34431000 52284000 0 0 0 8490000 9408700 6850700 0 0 0 14968000 21248000 16938000 0 0 0 15250 1376 14760 286717;286718;286719;286720;286721;286722;286723;286724;286725;286726;286727;286728;286729;286730;286731;286732;286733;286734;286735;286736;286737;286738;286739 176137;176138;176139;176140;176141;176142;176143;176144;176145;176146 176139 10 NDIQAAK Unmodified 758.39227 0.39226725 1394 P32662 gph Phosphoglycolate phosphatase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 1 1 1 1 1 1 1 1 9.6067 10.289 2 0.011149 2375 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.086 50.981 5825400000 2909000000 2500600000 27677000 0 0 0 57714000 40892000 38109000 0 0 0 19302000 9793700 9269800 29506000 26096000 107400000 17959000 17328000 14688000 0 0 0 15251 1394 14761 286740;286741;286742;286743;286744;286745;286746;286747;286748;286749;286750;286751;286752;286753;286754;286755;286756;286757;286758 176147;176148;176149;176150;176151;176152;176153;176154;176155 176151 9 NDLQGATLAIVPGDPDR Unmodified 1750.885 0.88497683 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 4 3 2 2 2 3 3 3 40.647 38.921 2;3 6.0476E-31 18219 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 283.21 277.24 15845000000 371060000 358600000 326010000 0 0 0 2577700000 2426100000 2683400000 0 0 0 1281200000 1145000000 1088200000 0 0 0 1164200000 1223000000 1200600000 0 0 0 15252 1079 14762 286759;286760;286761;286762;286763;286764;286765;286766;286767;286768;286769;286770;286771;286772;286773;286774;286775;286776;286777;286778;286779;286780;286781;286782;286783;286784;286785;286786;286787;286788;286789 176156;176157;176158;176159;176160;176161;176162;176163;176164;176165;176166;176167;176168;176169;176170;176171;176172;176173;176174;176175;176176;176177;176178 176173 21 NDLQGATLAIVPGDPDRVEK Unmodified 2107.0909 0.090946857 1079 P12758 udp Uridine phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 1 4 3 4 2 1 2 4 3 3 2 1 1 3 3 3 1 1 1 35.343 33.788 2;3;4 3.5619E-81 16417 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 322.23 307.2 15398000000 392430000 337550000 336400000 9991500 1051500 0 2724900000 2400000000 2465000000 15088000 12688000 12227000 1003000000 1049800000 1011600000 12718000 7269700 7445700 1220800000 1192800000 1168100000 5520800 5408600 6145500 15253 1079 14763 286790;286791;286792;286793;286794;286795;286796;286797;286798;286799;286800;286801;286802;286803;286804;286805;286806;286807;286808;286809;286810;286811;286812;286813;286814;286815;286816;286817;286818;286819;286820;286821;286822;286823;286824;286825;286826;286827;286828;286829;286830;286831;286832;286833;286834;286835;286836;286837;286838;286839;286840 176179;176180;176181;176182;176183;176184;176185;176186;176187;176188;176189;176190;176191;176192;176193;176194;176195;176196;176197;176198;176199;176200;176201;176202;176203;176204;176205;176206;176207;176208;176209;176210;176211;176212 176191 34 NDMGLTNVEIMIPFVR Unmodified 1847.9274 0.92737569 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.097 53.64 2 0.006777 19761 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 65.563 58.3 538400000 70779000 58100000 59838000 0 6706000 5909600 29716000 30636000 31101000 0 0 0 45888000 40260000 0 0 0 0 59724000 50168000 49571000 0 0 0 15254 1210 14764 286841;286842;286843;286844;286845;286846;286847;286848;286849;286850;286851;286852;286853 176213 176213 1 NDNKPLSPETWQHLK Unmodified 1805.906 0.90604662 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 22.49 21.936 2;3;4 2.5091E-15 9141 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 199.15 197.89 3060500000 402180000 387600000 370130000 0 0 0 246630000 222680000 206330000 0 0 0 179080000 184750000 143180000 0 0 0 248410000 234780000 234760000 0 0 0 15255 1195 14765 286854;286855;286856;286857;286858;286859;286860;286861;286862;286863;286864;286865;286866;286867;286868;286869;286870;286871;286872;286873;286874;286875;286876;286877;286878;286879;286880;286881;286882;286883;286884;286885;286886;286887;286888;286889 176214;176215;176216;176217;176218;176219;176220;176221;176222;176223;176224;176225;176226;176227;176228;176229;176230;176231;176232;176233;176234;176235;176236;176237;176238;176239;176240;176241;176242;176243;176244;176245 176236 32 NDNPQAASRPWDK Unmodified 1497.6961 0.69605384 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.46 14.326 3 2.8583E-05 4507 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.629 77.464 2077800000 84078000 105790000 96826000 0 0 0 224370000 223270000 193300000 0 0 0 203860000 218240000 183720000 0 0 0 189040000 166580000 188760000 0 0 0 15256 596 14766 286890;286891;286892;286893;286894;286895;286896;286897;286898;286899;286900;286901 176246;176247;176248;176249 176247 4 NDPCPCGSGK Unmodified 1090.4172 0.41717815 1057;761 P10408;P0AD05 secA;yecA Protein translocase subunit SecA;Uncharacterized protein YecA no no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9.37 9.9479 2 0.00056666 1980 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 94.692 94.001 214470000 26759000 18773000 6189800 0 0 0 15722000 11050000 9440800 11825000 9528100 7744900 7064400 5932900 0 0 9366700 10036000 12741000 17903000 24673000 0 9716700 0 15257 1057;761 14767 286902;286903;286904;286905;286906;286907;286908;286909;286910;286911;286912;286913;286914;286915;286916;286917;286918 176250;176251;176252;176253;176254;176255;176256;176257;176258;176259;176260 176250 11 NDPCPCGSGKK Unmodified 1218.5121 0.51214116 1057;761 P10408;P0AD05 secA;yecA Protein translocase subunit SecA;Uncharacterized protein YecA no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 10.293 10.416 2;3 9.8999E-05 1813 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 123.86 106.48 350020000 0 0 0 0 0 0 0 0 0 51734000 42619000 45367000 0 0 0 32472000 43207000 47047000 0 0 0 26081000 32855000 28642000 15258 1057;761 14768 286919;286920;286921;286922;286923;286924;286925;286926;286927;286928;286929;286930;286931;286932;286933;286934;286935;286936 176261;176262;176263;176264;176265;176266;176267;176268;176269;176270 176263 9 NDPFSPEEDSR Unmodified 1291.5317 0.53167386 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.146 21.494 2 1.4783E-05 8720 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 142 131.28 138460000 21261000 18858000 16507000 0 0 0 11129000 11288000 12817000 0 0 0 6589800 8273100 6466500 0 0 0 7769800 9229800 8271300 0 0 0 15259 88 14769 286937;286938;286939;286940;286941;286942;286943;286944;286945;286946;286947;286948 176271;176272;176273;176274;176275;176276;176277;176278;176279 176273 9 NDPLAMQR Unmodified 943.45455 0.45454993 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.681 18.12 2 0.00024649 5243 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 150.17 139.98 7148300000 438610000 412630000 430280000 49418000 43747000 49918000 751050000 781740000 670300000 199620000 174480000 181800000 484870000 392550000 362490000 19104000 14853000 14742000 497440000 519870000 504110000 55805000 49224000 49654000 15260 293 14770 286949;286950;286951;286952;286953;286954;286955;286956;286957;286958;286959;286960;286961;286962;286963;286964;286965;286966;286967;286968;286969;286970;286971;286972 176280;176281;176282;176283;176284;176285;176286;176287;176288;176289;176290;176291;176292;176293;176294;176295;176296;176297;176298;176299;176300;176301;176302;176303 176289 24 NDPLAMQR Oxidation (M) 959.44946 0.44946455 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.782 13.524 2 0.0060492 4081 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 87.754 70.828 224530000 15471000 13365000 12630000 1284900 1129600 0 26854000 24461000 24775000 11834000 7671800 7839500 11174000 8937000 9343100 0 0 0 16918000 18729000 12116000 0 0 0 15261 293 14770 286973;286974;286975;286976;286977;286978;286979;286980;286981;286982;286983;286984;286985;286986;286987;286988;286989 176304;176305;176306;176307;176308 176305 138 4 NDPQFNR Unmodified 889.40423 0.40422892 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.072 12.558 2 0.019405 2864 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 77.748 70.037 222860000 18821000 25572000 20057000 0 0 0 0 53657000 68080000 5138000 4930400 5139200 5211100 0 0 780650 701230 467740 0 8850600 5458100 0 0 0 15262 1440 14771 286990;286991;286992;286993;286994;286995;286996;286997;286998;286999;287000;287001;287002;287003 176309;176310;176311;176312;176313;176314 176311 5 NDQLKEPMFFGQPVNVAR Unmodified 2089.0415 0.041494244 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 38.641 36.992 2;3 5.5268E-37 18291 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 245.92 240.61 1121700000 103790000 82614000 76641000 0 0 0 69419000 74230000 82065000 2173800 3128300 3109300 93508000 69518000 77702000 2368800 0 2183400 137640000 123900000 117710000 0 0 0 15263 1759 14772 287004;287005;287006;287007;287008;287009;287010;287011;287012;287013;287014;287015;287016;287017;287018;287019;287020;287021;287022;287023;287024;287025;287026;287027;287028;287029;287030;287031;287032 176315;176316;176317;176318;176319;176320;176321;176322;176323;176324;176325;176326;176327;176328;176329;176330;176331;176332;176333 176318 19 NDSVPTLAQMTDK Unmodified 1418.6711 0.67114423 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.185 29.754 2 2.2563E-06 13888 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.76 131.03 1619600000 0 0 0 2503200 1510900 1775600 118690000 110390000 124020000 3264000 3236300 2730500 199560000 215550000 201880000 5114700 2947000 3220000 197360000 208040000 205110000 4480900 3829200 4385400 15264 38 14773 287033;287034;287035;287036;287037;287038;287039;287040;287041;287042;287043;287044;287045;287046;287047;287048;287049;287050;287051;287052;287053 176334;176335;176336;176337;176338;176339;176340;176341;176342;176343;176344;176345;176346;176347;176348;176349;176350 176343 16 NDTEWYEHLPPEIDSQLVHK Unmodified 2449.155 0.15500368 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 1 1 2 1 2 2 2 2 2 2 2 1 1 2 1 2 2 2 2 2 41.883 39.961 3;4 6.2544E-05 16051 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 76.704 76.267 254630000 15272000 5807300 7004500 3356400 1597100 3132500 27127000 21513000 23281000 18367000 19679000 16347000 7243100 6421500 12970000 0 0 0 7999400 19742000 18045000 6589800 5568500 7562400 15265 122 14774 287054;287055;287056;287057;287058;287059;287060;287061;287062;287063;287064;287065;287066;287067;287068;287069;287070;287071;287072;287073;287074;287075;287076;287077;287078;287079;287080;287081;287082;287083;287084;287085;287086;287087;287088;287089 176351;176352;176353;176354;176355;176356;176357;176358;176359;176360;176361 176354 11 NDTSAGDGAR Unmodified 962.40535 0.40535113 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.1516 6.0407 2 2.7865E-12 1425 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 210.37 208.91 537100000 120750000 123190000 116310000 342120 307410 0 19041000 19002000 17295000 0 0 0 17886000 17066000 15679000 0 0 0 24008000 22820000 23402000 0 0 0 15266 334 14775 287090;287091;287092;287093;287094;287095;287096;287097;287098;287099;287100;287101;287102;287103 176362;176363;176364;176365;176366;176367;176368;176369;176370;176371;176372 176369 11 NDTYLEYEAFAK Unmodified 1462.6616 0.6616254 484 P0A927 tsx Nucleoside-specific channel-forming protein tsx yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.785 36.308 2 0.00075383 13381 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 80.763 78.009 175260000 6458300 6308800 5678700 1618200 1612700 1645000 7981600 9156400 6927300 0 0 0 12610000 11120000 12000000 3817100 2377100 2602700 25222000 23779000 24320000 3737800 3352800 2932900 15267 484 14776 287104;287105;287106;287107;287108;287109;287110;287111;287112;287113;287114;287115;287116;287117;287118;287119;287120;287121;287122;287123;287124 176373;176374;176375;176376 176373 1 NDVEIIAR Unmodified 928.49779 0.49779495 1981 Q93K97 nudF ADP-ribose pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 20.61 21.008 2 0.044705 8580 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 60.895 9.1082 188570000 0 0 0 0 0 0 24445000 26919000 23489000 0 0 0 16827000 14206000 13719000 0 0 0 24149000 25770000 19050000 0 0 0 15268 1981 14777 287125;287126;287127;287128;287129;287130;287131;287132;287133 176377;176378 176377 2 NDVESSVQEENLER Unmodified 1646.7384 0.73837217 1400 P32703 yjcE Uncharacterized Na(+)/H(+) exchanger YjcE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 20.986 21.293 2 1.5457E-06 8171 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.28 121.43 36620000 0 3701300 2357400 0 0 0 4576700 5089400 5402700 0 0 0 0 2431200 2960000 0 0 0 2634200 3420900 4046000 0 0 0 15269 1400 14778 287134;287135;287136;287137;287138;287139;287140;287141;287142;287143 176379 176379 1 NDVEWLGFHWSGNVR Unmodified 1814.8489 0.84886609 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 2 2 2 2 2 45.941 44.482 2;3 7.5344E-12 22032 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 188.91 183.07 678280000 32666000 43314000 44647000 0 0 0 48077000 63419000 61705000 0 0 0 53343000 54135000 58340000 0 0 0 78526000 74996000 65112000 0 0 0 15270 63 14779 287144;287145;287146;287147;287148;287149;287150;287151;287152;287153;287154;287155;287156;287157;287158;287159;287160;287161;287162;287163;287164;287165 176380;176381;176382;176383;176384;176385;176386;176387;176388;176389;176390;176391;176392 176384 13 NDVNPEITDR Unmodified 1171.5469 0.54692999 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.623 16.431 2 2.08E-06 5770 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 157.99 153.26 525260000 36567000 41546000 35769000 0 0 0 67820000 69810000 68904000 0 0 0 36667000 30426000 29290000 0 0 0 34181000 39852000 34430000 0 0 0 15271 448;449 14780 287166;287167;287168;287169;287170;287171;287172;287173;287174;287175;287176;287177 176393;176394;176395;176396;176397;176398 176393 1 NDVSDSEKK Unmodified 1020.4724 0.47236807 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.3692 7.0139 2 2.2846E-05 1301 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.2 157.2 639900000 170570000 172420000 146720000 4224000 4819300 4354500 26826000 31554000 30903000 6757400 7544800 6617800 0 0 2520200 0 0 317010 8056100 6492300 7509900 668980 487920 546170 15272 677 14781 287178;287179;287180;287181;287182;287183;287184;287185;287186;287187;287188;287189;287190;287191;287192;287193;287194;287195;287196;287197 176399;176400;176401;176402;176403;176404;176405;176406;176407;176408;176409 176408 11 NDYDQTHTPMFHQMEGLIVDTNISFTNLK Unmodified 3408.5755 0.57547629 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.107 50.86 3;4 8.86E-54 25107 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 243.55 243.38 1467500000 114590000 95959000 100770000 0 0 0 93601000 105090000 110300000 0 0 0 99578000 124100000 144730000 0 0 0 172530000 158920000 147380000 0 0 0 15273 183 14782 287198;287199;287200;287201;287202;287203;287204;287205;287206;287207;287208;287209;287210;287211;287212;287213;287214;287215;287216;287217;287218;287219;287220;287221 176410;176411;176412;176413;176414;176415;176416;176417;176418;176419;176420;176421;176422;176423;176424;176425;176426;176427;176428;176429;176430;176431 176412 22 NDYGMPEQVQFWSVADNVR Unmodified 2254.0113 0.011316328 187 P08390 usg USG-1 protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 1 1 1 1 2 2 2 1 2 2 2 1 2 2 2 2 2 2 51.556 50.318 2;3 5.2935E-14 24815 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 194.59 180.63 337370000 30238000 28009000 18578000 1247400 979780 1554600 32762000 30044000 32199000 0 0 1621400 34058000 30758000 28969000 0 0 4614000 14639000 17608000 16505000 4533700 4219500 4234600 15274 187 14783 287222;287223;287224;287225;287226;287227;287228;287229;287230;287231;287232;287233;287234;287235;287236;287237;287238;287239;287240;287241;287242;287243;287244;287245;287246;287247;287248;287249;287250;287251;287252;287253;287254;287255 176432;176433;176434;176435;176436;176437;176438 176434 6 NDYPDDYNEK Unmodified 1271.4942 0.49422572 178 P08194 glpT Glycerol-3-phosphate transporter yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.139 14.974 2 0.0038984 4618 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 70.363 70.363 52212000 0 0 0 0 0 0 6889300 7266400 7060800 0 0 0 8322700 5726800 5291000 0 0 0 4079700 3525700 4049900 0 0 0 15275 178 14784 287256;287257;287258;287259;287260;287261;287262;287263;287264 176439;176440;176441 176441 3 NEADEKLSAELSR Unmodified 1460.7107 0.71070086 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 6 5 5 8 5 7 5 3 5 20.373 20.195 2;3 5.7759E-24 5548 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 274.43 236.87 5112900000 0 0 0 886970 1216600 0 0 0 0 679470000 567170000 610450000 0 0 0 629580000 524410000 547650000 0 0 0 504000000 538670000 509440000 15276 1616 14785 287265;287266;287267;287268;287269;287270;287271;287272;287273;287274;287275;287276;287277;287278;287279;287280;287281;287282;287283;287284;287285;287286;287287;287288;287289;287290;287291;287292;287293;287294;287295;287296;287297;287298;287299;287300;287301;287302;287303;287304;287305;287306;287307;287308;287309;287310;287311;287312;287313;287314;287315 176442;176443;176444;176445;176446;176447;176448;176449;176450;176451;176452;176453;176454;176455;176456;176457;176458;176459;176460;176461;176462;176463;176464;176465;176466;176467;176468;176469;176470;176471;176472;176473;176474;176475;176476;176477;176478;176479;176480;176481;176482;176483;176484 176443 42 NEADNGLR Unmodified 887.40971 0.40970823 952 P0AFL3 ppiA Peptidyl-prolyl cis-trans isomerase A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.91 11.713 2 0.085812 2894 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.782 53.244 227870000 20940000 19626000 21491000 0 0 0 21862000 16021000 18518000 0 0 0 13636000 0 17965000 0 0 0 26761000 24811000 26241000 0 0 0 15277 952 14786 287316;287317;287318;287319;287320;287321;287322;287323;287324;287325;287326 176485;176486 176485 0 NEAELNALWDSK Unmodified 1388.6572 0.65720872 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.585 35.853 2 0.033736 17233 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 54.471 50.708 245520000 29701000 29777000 27381000 0 840500 742350 15686000 16547000 13826000 0 0 0 16350000 0 15123000 0 0 0 26325000 27019000 24154000 2043000 0 0 15278 1221 14787 287327;287328;287329;287330;287331;287332;287333;287334;287335;287336;287337;287338;287339;287340 176487;176488;176489;176490;176491;176492 176492 0 NEALMTEILHDHAIDTVIHFAGLK Unmodified 2687.3741 0.37412135 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 3 3 3 2 3 2 2 2 3 2 52.619 51.348 3;4;5 1.6503E-10 24941 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.98 123.85 555420000 71492000 168120000 159100000 0 0 0 42081000 29996000 26071000 0 0 0 8316200 9362100 9026700 0 0 0 19138000 12718000 0 0 0 0 15279 202 14788 287341;287342;287343;287344;287345;287346;287347;287348;287349;287350;287351;287352;287353;287354;287355;287356;287357;287358;287359;287360;287361;287362;287363;287364;287365;287366;287367 176493;176494;176495;176496;176497;176498;176499;176500 176498 8 NEANNGLK Unmodified 858.41954 0.41954463 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 8.0477 8.8951 2 0.026418 1990 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 64.757 36.185 75972000 8179100 7455400 14316000 0 0 0 0 0 0 0 0 0 7045700 5531700 8569600 0 0 0 8476300 7822900 8574900 0 0 0 15280 1222 14789 287368;287369;287370;287371;287372;287373;287374;287375;287376 176501;176502;176503;176504;176505;176506 176502 6 NEAPLGIVYGSDAVASK Unmodified 1689.8574 0.85736509 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 37.081 35.642 2;3 1.8759E-08 17145 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.83 133.18 406310000 149760000 135670000 120890000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15281 1464 14790 287377;287378;287379;287380;287381;287382 176507;176508;176509;176510;176511 176509 5 NEAVETETAE Unmodified 1091.4619 0.46186296 1705 P65556 yfcD Uncharacterized Nudix hydrolase YfcD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.323 15.088 2 0.083829 4946 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 46.158 43.999 166210000 9954100 10488000 8600100 0 0 0 10833000 10504000 9708400 0 0 0 18780000 18228000 13600000 0 0 0 17566000 18575000 19369000 0 0 0 15282 1705 14791 287383;287384;287385;287386;287387;287388;287389;287390;287391;287392;287393;287394 176512 176512 0 NEAWDVAR Unmodified 959.44609 0.44609374 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.117 21.285 2 0.0004427 8486 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.83 126.47 347040000 26654000 20170000 23933000 1724000 0 0 33004000 30870000 33670000 0 5615500 5567200 26940000 21397000 26076000 0 0 0 0 43965000 30677000 6594000 4242400 5936400 15283 1197 14792 287395;287396;287397;287398;287399;287400;287401;287402;287403;287404;287405;287406;287407;287408;287409;287410;287411;287412 176513;176514;176515;176516;176517;176518;176519;176520;176521 176515 9 NEAWTWEHQALVR Unmodified 1638.7903 0.79028858 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 31.614 30.305 3 0.064341 14708 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 30.998 26.682 58666000 0 0 0 0 0 0 14847000 0 0 0 0 0 6827200 8081400 8734200 0 0 0 0 7679900 12497000 0 0 0 15284 1353 14793 287413;287414;287415;287416;287417;287418 176522 176522 1 NEAYVTHR Unmodified 988.47264 0.47264284 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.656 11.228 2 0.0001182 2626 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 157.58 153.22 1195500000 97013000 87106000 96734000 0 3809900 2884600 62834000 61804000 68216000 5242300 5017400 3722200 77265000 60570000 68025000 10667000 5721100 5217800 154700000 131000000 144120000 12857000 11240000 19762000 15285 1819 14794 287419;287420;287421;287422;287423;287424;287425;287426;287427;287428;287429;287430;287431;287432;287433;287434;287435;287436;287437;287438;287439;287440;287441 176523;176524;176525;176526;176527;176528;176529;176530;176531;176532;176533;176534;176535 176525 11 NECQVMPYPNPADIAR Unmodified 1873.8451 0.84510262 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 37.953 36.245 2;3 3.3445E-39 17661 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 256.96 256.48 2222400000 730100000 664620000 659100000 386670 1570600 1000100 19320000 19468000 22993000 0 0 0 8363300 6748400 6021700 0 0 0 28863000 26845000 26999000 0 0 0 15286 1219 14795 287442;287443;287444;287445;287446;287447;287448;287449;287450;287451;287452;287453;287454;287455;287456;287457;287458;287459;287460;287461;287462;287463;287464;287465;287466 176536;176537;176538;176539;176540;176541;176542;176543;176544;176545;176546;176547;176548;176549;176550;176551 176546 16 NECQVMPYPNPADIAR Oxidation (M) 1889.84 0.84001724 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 1 0 By MS/MS By MS/MS By matching 1 1 1 32.547 31.374 2 3.7144E-10 14753 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.78 148.78 28251000 7562200 9901900 10787000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15287 1219 14795 287467;287468;287469 176552;176553 176553 514 2 NEDEVRK Unmodified 888.43011 0.43010932 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 4.5555 5.4435 2 0.0024642 903 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.65 62.451 254260000 0 0 0 0 0 0 20124000 20807000 20334000 0 0 0 31032000 22057000 20927000 0 0 0 38495000 41019000 39468000 0 0 0 15288 158 14796 287470;287471;287472;287473;287474;287475;287476;287477;287478 176554;176555;176556 176556 3 NEDIFIPLQVR Unmodified 1342.7245 0.72450043 1666 P63883 amiC N-acetylmuramoyl-L-alanine amidase AmiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.893 45.596 2 0.001381 22199 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.25 59.894 47586000 9081200 11579000 6739400 474580 0 0 0 0 0 0 0 0 0 4369700 0 0 0 0 5706400 5178000 4458100 0 0 0 15289 1666 14797 287479;287480;287481;287482;287483;287484;287485;287486 176557;176558;176559;176560;176561;176562 176561 0 NEEALELLFGHLR Unmodified 1539.8045 0.80454166 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 50.45 49.039 2;3 1.6524E-50 24369 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 310.49 276.53 2860700000 330650000 273860000 294770000 2653100 1995800 2843900 291070000 204560000 218040000 2691500 1650600 6805600 205910000 171330000 182990000 0 0 0 225730000 236640000 201680000 2523000 0 2343700 15290 1903 14798 287487;287488;287489;287490;287491;287492;287493;287494;287495;287496;287497;287498;287499;287500;287501;287502;287503;287504;287505;287506;287507;287508;287509 176563;176564;176565;176566;176567;176568;176569;176570;176571;176572;176573;176574;176575;176576;176577;176578 176565 16 NEEALELLFGHLRK Unmodified 1667.8995 0.89950468 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 1 By MS/MS 1 42.669 40.967 3 0.060522 14415 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 37.954 29.777 1555000 0 0 0 0 0 1555000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15291 1903 14799 287510 176579 176579 0 NEEIAQAAAAVK Unmodified 1213.6303 0.63026569 1769 P75777 ybhG UPF0194 membrane protein YbhG yes yes 0 0 0 By MS/MS By MS/MS 1 1 21.169 21.543 2 1.1655E-06 8534 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.46 102.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15292 1769 14800 287511;287512 176580;176581 176581 2 NEEPEIEEEIDESEDETVDEERVER Unmodified 3047.2851 0.28508697 1072 P11557 damX Cell division protein DamX yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 37.808 35.677 3 3.0026E-10 14293 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 120.64 120.64 19049000 0 0 0 1002500 1223000 1341200 0 0 0 4286700 3830900 3266400 0 0 0 0 0 0 0 0 0 2651500 1447200 0 15293 1072 14801 287513;287514;287515;287516;287517;287518;287519;287520 176582;176583;176584 176582 3 NEETLEPVPYFQK Unmodified 1592.7722 0.77223848 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 1 2 2 2 1 1 1 37.572 35.814 2;3 8.0636E-24 16568 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 232.88 231.29 3682800000 408320000 382850000 343710000 6740000 6822400 7263900 216620000 227380000 197810000 10522000 10006000 10057000 277720000 276070000 260100000 3020500 0 0 360330000 344210000 317840000 5778400 4372100 5224900 15294 424 14802 287521;287522;287523;287524;287525;287526;287527;287528;287529;287530;287531;287532;287533;287534;287535;287536;287537;287538;287539;287540;287541;287542;287543;287544;287545;287546;287547;287548;287549;287550;287551;287552;287553;287554;287555;287556;287557;287558 176585;176586;176587;176588;176589;176590;176591;176592;176593;176594;176595;176596;176597;176598;176599;176600;176601;176602;176603;176604;176605;176606 176604 22 NEFCIQVTGTVR Unmodified 1422.6925 0.69254837 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 1 3 2 2 2 2 2 1 1 1 37.104 35.482 2 0.00024235 15344 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 85.958 76.77 762930000 64627000 74500000 80594000 0 0 216020 101020000 47685000 55438000 0 0 0 58710000 68016000 58531000 0 0 0 54556000 55111000 43927000 0 0 0 15295 1189 14803 287559;287560;287561;287562;287563;287564;287565;287566;287567;287568;287569;287570;287571;287572;287573;287574;287575;287576;287577;287578;287579;287580;287581;287582;287583;287584 176607;176608;176609;176610;176611;176612;176613;176614;176615;176616 176614 3 NEFLVEK Unmodified 877.45453 0.45453316 1968 Q46938 kduI 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 20.859 21.189 2 0.037896 8095 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 65.252 35.914 77125000 4327000 3633700 0 0 0 0 6806600 9554600 8759500 0 0 0 6893700 7036500 5278500 0 0 0 9166400 7494200 8174000 0 0 0 15296 1968 14804 287585;287586;287587;287588;287589;287590;287591;287592;287593;287594;287595 176617;176618;176619;176620;176621;176622;176623 176622 7 NEGISVR Unmodified 773.40317 0.40316629 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 2 1 1 1 1 12.453 13.352 2 0.0014724 3856 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.39 103.83 3096000000 244480000 242640000 244150000 0 764500 425500 0 0 590970000 0 0 0 285660000 279480000 250430000 0 0 0 339850000 330970000 286190000 0 0 0 15297 448;449 14805 287596;287597;287598;287599;287600;287601;287602;287603;287604;287605;287606;287607;287608;287609 176624;176625;176626;176627;176628;176629;176630;176631 176627 8 NEGVVASSAWPYQANALK Unmodified 1903.9428 0.94282606 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 38.01 36.57 2 1.8213E-13 17691 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.15 168.3 42327000 13672000 13621000 15035000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15298 1816 14806 287610;287611;287612 176632;176633;176634 176633 3 NEHGLHAR Unmodified 932.45766 0.45766147 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 5.6376 6.4317 2 0.00093536 1436 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.9 101.46 101930000 13417000 14663000 13194000 0 0 0 0 0 0 0 0 0 13303000 0 0 0 0 0 15746000 16162000 15447000 0 0 0 15299 1748 14807 287613;287614;287615;287616;287617;287618;287619 176635;176636;176637;176638 176637 2 NEHGLHARPGTMLVNTIK Unmodified 1987.0422 0.042162946 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 17.597 18.088 4 0.008758 4790 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 43.454 33.893 40601000 0 0 0 4805700 5424400 4954900 0 0 0 0 3429600 2837100 0 4908200 4844600 0 0 0 0 0 5001900 2363500 2031300 0 15300 1748 14808 287620;287621;287622;287623;287624;287625;287626;287627;287628;287629 176639;176640;176641 176641 3 NEIIPTGGHDADGVLK Unmodified 1634.8264 0.82639932 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 26.05 24.87 2;3 2.6777E-14 11244 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 178.1 171.86 498900000 171110000 162990000 153390000 0 0 0 1870700 2543200 2446400 0 0 0 0 0 0 0 0 0 0 2643100 1916700 0 0 0 15301 1168 14809 287630;287631;287632;287633;287634;287635;287636;287637;287638;287639;287640 176642;176643;176644;176645;176646;176647;176648 176644 7 NEITAIFASLK Unmodified 1205.6656 0.66558856 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 51.871 50.642 2 0.0028059 18384 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 67.726 58.512 30859000 7719100 6854200 6755000 3291200 3321300 2918100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15302 152 14810 287641;287642;287643;287644;287645;287646 176649 176649 1 NEIVNFVLR Unmodified 1102.6135 0.61349341 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 41.752 40.053 2 1.7636E-06 19446 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 178.08 159.76 1045900000 224320000 191940000 183990000 0 0 700660 108760000 112310000 104910000 0 0 0 20674000 18577000 19898000 0 0 0 21228000 20848000 17781000 0 0 0 15303 757 14811 287647;287648;287649;287650;287651;287652;287653;287654;287655;287656;287657;287658;287659 176650;176651;176652;176653;176654;176655;176656;176657;176658;176659;176660;176661 176657 12 NELALHSK Unmodified 910.48723 0.48723027 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.355 12.188 2 0.0026273 3177 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 110.12 102.43 146520000 8816100 17304000 11033000 0 0 0 6831000 6062800 5843500 0 0 0 14892000 11585000 10216000 0 0 0 22576000 15400000 15962000 0 0 0 15304 1343 14812 287660;287661;287662;287663;287664;287665;287666;287667;287668;287669;287670;287671 176662;176663;176664;176665 176664 0 NELALHSKEELEQHLANVWEVMR Unmodified 2774.381 0.38099764 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 43.352 41.83 4 0.0025566 14797 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 56.882 56.198 22821000 0 0 0 5950500 5384600 6978900 0 0 0 0 0 0 0 2211600 0 0 0 0 0 2295100 0 0 0 0 15305 1343 14813 287672;287673;287674;287675;287676 176666;176667;176668 176667 3 NELEDLLEK Unmodified 1101.5554 0.55536941 973 P0AFZ1 sseB Protein SseB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 40.552 38.691 2 0.00025088 18144 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 122.13 88.492 122640000 0 0 0 0 0 0 23826000 21847000 26066000 0 0 0 27034000 0 23868000 0 0 0 0 0 0 0 0 0 15306 973 14814 287677;287678;287679;287680;287681;287682;287683;287684;287685;287686 176669;176670;176671;176672;176673;176674;176675;176676;176677;176678 176676 10 NELFTATR Unmodified 950.48214 0.48214489 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.652 21.058 2 0.00049564 8284 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.77 103.45 786220000 58554000 62062000 51829000 0 0 0 67930000 63043000 73635000 0 0 0 54073000 39803000 45879000 0 0 0 100030000 91092000 78298000 0 0 0 15307 787 14815 287687;287688;287689;287690;287691;287692;287693;287694;287695;287696;287697;287698 176679;176680 176679 2 NELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKK Unmodified 4014.1161 0.11610556 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 2 By MS/MS 1 53.464 53.518 4 1.3274E-22 19913 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 136.82 132.37 9428700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9428700 0 0 0 0 0 0 0 15308 297 14816 287699 176681 176681 1 NELLDVSDVSETINSIR Unmodified 1902.9535 0.95345032 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 51.545 50.406 2;3 4.0463E-89 24461 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 345.15 339.42 970920000 41563000 51544000 40318000 3187400 2518400 3233300 67040000 64855000 61209000 34019000 37366000 36665000 63395000 56558000 56236000 16680000 25218000 19559000 81535000 76111000 69122000 23190000 21008000 18791000 15309 1057 14817 287700;287701;287702;287703;287704;287705;287706;287707;287708;287709;287710;287711;287712;287713;287714;287715;287716;287717;287718;287719;287720;287721;287722;287723;287724;287725;287726;287727;287728;287729;287730;287731;287732;287733;287734;287735;287736;287737;287738;287739;287740;287741;287742;287743;287744;287745;287746;287747 176682;176683;176684;176685;176686;176687;176688;176689;176690;176691;176692;176693;176694;176695;176696;176697;176698;176699;176700 176695 19 NELLDVSDVSETINSIREDVFK Unmodified 2521.2548 0.2547773 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.286 54.105 3 6.0426E-53 21646 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 254.39 250.5 1022800000 0 0 0 13934000 14934000 14734000 0 268820 3302700 94962000 98347000 103880000 0 4132900 2422300 96614000 169860000 198340000 0 109030 0 69121000 71964000 65862000 15310 1057 14818 287748;287749;287750;287751;287752;287753;287754;287755;287756;287757;287758;287759;287760;287761;287762;287763;287764 176701;176702;176703;176704;176705;176706;176707;176708;176709;176710;176711;176712 176706 12 NELNEAAETLANFLK Unmodified 1675.8417 0.84171503 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.061 53.588 2;3 3.1912E-27 26606 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 293.8 277.42 3136500000 330980000 311600000 334340000 0 0 0 266430000 221900000 236710000 0 0 0 229460000 230700000 220770000 0 0 0 253360000 266090000 234130000 0 0 0 15311 1658 14819 287765;287766;287767;287768;287769;287770;287771;287772;287773;287774;287775;287776;287777;287778;287779;287780;287781;287782;287783;287784;287785;287786;287787;287788 176713;176714;176715;176716;176717;176718;176719;176720;176721;176722;176723;176724;176725;176726;176727;176728;176729;176730;176731;176732;176733;176734;176735;176736 176715 24 NELNEAAETLANFLKDDANIHAIQR Unmodified 2809.3995 0.39948448 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.632 52.467 4 2.4413E-15 25972 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 142.42 140.08 632960000 65822000 66756000 59570000 2445100 0 0 67833000 50452000 57252000 0 0 4372100 40044000 33283000 25208000 2641400 4776400 5729300 50230000 49303000 47239000 0 0 0 15312 1658 14820 287789;287790;287791;287792;287793;287794;287795;287796;287797;287798;287799;287800;287801;287802;287803;287804;287805 176737;176738;176739;176740;176741;176742 176738 5 NELPDLVMHHFPATAK Unmodified 1818.9087 0.90868916 1595 P51025 frmB S-formylglutathione hydrolase FrmB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 33.391 31.891 3;4 5.4648E-07 15152 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 106.36 100.09 736440000 32987000 33611000 28744000 0 0 0 85391000 81294000 74327000 0 1046600 897470 64128000 62515000 60317000 0 0 0 72108000 67268000 71803000 0 0 0 15313 1595 14821 287806;287807;287808;287809;287810;287811;287812;287813;287814;287815;287816;287817;287818;287819;287820;287821;287822;287823;287824;287825;287826;287827;287828;287829;287830;287831 176743;176744;176745;176746;176747;176748;176749;176750;176751;176752;176753;176754;176755;176756;176757;176758;176759;176760;176761;176762;176763 176747 21 NELPDTLGLR Unmodified 1126.5982 0.59823728 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.271 31.831 2 0.00049848 14591 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 99.136 83.696 140660000 11325000 12171000 9262900 0 0 0 13110000 8652100 10448000 0 0 0 11240000 10322000 11267000 0 0 0 15007000 13573000 14279000 0 0 0 15314 1889 14822 287832;287833;287834;287835;287836;287837;287838;287839;287840;287841;287842;287843 176764;176765;176766;176767;176768 176768 4 NELSQYGILPEEWGGESQFVHVSAK Unmodified 2803.3453 0.34532364 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.075 47.093 3 2.2458E-15 22813 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.38 137.22 523760000 90179000 70698000 83035000 0 0 1748400 0 0 29847000 0 0 0 42732000 36046000 38339000 8141100 6566600 4090600 37395000 38444000 36500000 0 0 0 15315 297 14823 287844;287845;287846;287847;287848;287849;287850;287851;287852;287853;287854;287855;287856;287857 176769;176770;176771;176772;176773;176774;176775;176776;176777;176778;176779;176780;176781 176775 13 NELSSYK Unmodified 839.4025 0.40249759 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 12.439 13.24 2 0.0015598 3842 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 127.84 117.54 671760000 107590000 95140000 114010000 0 0 0 0 0 129220000 0 0 0 0 110850000 0 0 0 0 0 0 114950000 0 0 0 15316 1120 14824 287858;287859;287860;287861;287862;287863 176782;176783;176784;176785 176784 4 NELTYGFQSAQK Unmodified 1384.6623 0.6622941 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 24.936 24.083 2 6.7989E-05 10943 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.74 111.24 976090000 26702000 20114000 24228000 617680 1460300 1561800 0 13247000 0 0 901860 0 0 0 0 394810000 241620000 248400000 0 0 0 0 1548700 881400 15317 658 14825 287864;287865;287866;287867;287868;287869;287870;287871;287872;287873;287874;287875;287876 176786;176787;176788;176789 176787 4 NELYESINYYQYEEK Unmodified 1983.8738 0.87380302 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 38.844 37.405 2 1.6699E-20 17984 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 219.43 215.45 102240000 39413000 26269000 36554000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15318 1914 14826 287877;287878;287879 176790;176791;176792 176792 3 NEMVPGVEGGMTR Unmodified 1375.6224 0.6224199 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.409 25.443 2 5.2636E-07 11460 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.91 141.3 585010000 163430000 142190000 143770000 0 0 0 24230000 21918000 23047000 0 0 0 8055800 5573800 7532200 1605700 0 0 14940000 15438000 13275000 0 0 0 15319 1254 14827 287880;287881;287882;287883;287884;287885;287886;287887;287888;287889;287890;287891;287892 176793;176794;176795;176796;176797;176798;176799;176800;176801;176802;176803 176799 11 NEMVPGVEGGMTR Oxidation (M) 1391.6173 0.61733452 1254 P25516 acnA Aconitate hydratase A yes yes 0 1 0 By matching By MS/MS 1 1 21.192 21.714 2 0.0013061 8647 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 67.726 67.726 10620000 0 6104100 4515700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15320 1254 14827 287893;287894 176804 176804 520 1 NENHAAR Unmodified 810.37326 0.37326314 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 3.0304 3.97 2 0.040351 526 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 64.803 61.559 15548000 0 0 35410 0 0 0 0 0 0 0 0 0 989810 1186900 764490 0 0 0 4076500 3888400 4606500 0 0 0 15321 717 14828 287895;287896;287897;287898;287899;287900;287901 176805;176806 176805 2 NENNEIFITR Unmodified 1248.6099 0.6098646 185 P08337 mutT 8-oxo-dGTP diphosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.111 24.947 2 0.00029946 11490 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 112.11 105.95 122650000 7165300 6012500 6237600 0 0 0 6460100 6521100 7080600 0 0 0 13417000 13720000 10945000 0 0 0 13880000 14588000 16621000 0 0 0 15322 185 14829 287902;287903;287904;287905;287906;287907;287908;287909;287910;287911;287912;287913 176807 176807 1 NENYWGEKPAIK Unmodified 1447.7096 0.70957864 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 19.981 20.325 2 4.9314E-05 7848 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.75 118.37 58068000 0 0 0 0 0 0 10228000 6487700 9268100 0 0 0 0 0 0 0 0 0 9129400 12064000 10892000 0 0 0 15323 1424 14830 287914;287915;287916;287917;287918;287919 176808;176809;176810;176811;176812 176812 5 NEPDAVAEK Unmodified 971.45599 0.45598972 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.14 12.023 2 0.011551 3016 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 65.465 64.387 2299400000 132630000 114350000 130400000 1041600 1991700 1075000 267770000 258940000 258250000 0 0 0 215890000 168220000 177300000 0 0 0 206080000 191230000 174260000 0 0 0 15324 441 14831 287920;287921;287922;287923;287924;287925;287926;287927;287928;287929;287930;287931;287932;287933;287934 176813;176814;176815;176816;176817;176818;176819;176820;176821;176822;176823 176815 11 NEPSGSLHGLMR Unmodified 1296.6245 0.62446881 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 17.867 18.442 2;3 2.1032E-06 6857 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.75 143.46 1497200000 78995000 84925000 71462000 626700 1508900 0 159810000 163680000 169660000 2647200 0 1499000 121980000 105580000 111280000 0 0 0 146480000 139710000 135370000 1066600 899060 0 15325 445 14832 287935;287936;287937;287938;287939;287940;287941;287942;287943;287944;287945;287946;287947;287948;287949;287950;287951;287952;287953;287954;287955;287956;287957;287958;287959;287960;287961;287962;287963;287964 176824;176825;176826;176827;176828;176829;176830;176831;176832;176833;176834;176835;176836;176837;176838;176839;176840;176841;176842;176843;176844;176845;176846;176847 176830 24 NEQDGGDLVYFQGHISPGVYAR Unmodified 2421.1349 0.13493694 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 5 7 6 8 4 4 5 2 3 3 3 3 4 2 2 2 3 4 5 7 7 8 40.489 38.793 2;3;4 5.7833E-75 18542 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 373.51 368.44 29658000000 751250000 752570000 631010000 2797900000 3207200000 2993300000 1039400000 979420000 925070000 279960000 250420000 220600000 524800000 455060000 461060000 111480000 69868000 75379000 1014900000 1016000000 969980000 3282900000 3407200000 3441300000 15326 939 14833 287965;287966;287967;287968;287969;287970;287971;287972;287973;287974;287975;287976;287977;287978;287979;287980;287981;287982;287983;287984;287985;287986;287987;287988;287989;287990;287991;287992;287993;287994;287995;287996;287997;287998;287999;288000;288001;288002;288003;288004;288005;288006;288007;288008;288009;288010;288011;288012;288013;288014;288015;288016;288017;288018;288019;288020;288021;288022;288023;288024;288025;288026;288027;288028;288029;288030;288031;288032;288033;288034;288035;288036;288037;288038;288039;288040;288041;288042;288043;288044;288045;288046;288047;288048;288049;288050;288051;288052;288053;288054;288055;288056;288057;288058;288059;288060;288061;288062;288063;288064;288065;288066;288067;288068;288069;288070;288071;288072 176848;176849;176850;176851;176852;176853;176854;176855;176856;176857;176858;176859;176860;176861;176862;176863;176864;176865;176866;176867;176868;176869;176870;176871;176872;176873;176874;176875;176876;176877;176878;176879;176880;176881;176882;176883;176884;176885;176886;176887;176888;176889;176890;176891;176892;176893;176894;176895;176896;176897;176898;176899;176900;176901;176902;176903;176904;176905;176906;176907;176908;176909;176910;176911;176912;176913;176914;176915;176916;176917;176918;176919;176920;176921;176922;176923;176924;176925;176926;176927;176928;176929;176930;176931;176932;176933;176934;176935;176936;176937;176938;176939;176940;176941;176942;176943;176944;176945;176946;176947;176948 176865 98 NESAGEQLR Unmodified 1002.473 0.47303677 187 P08390 usg USG-1 protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.425 12.098 2 0.0068604 2522 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 69.423 25.616 220390000 36242000 0 27052000 0 0 3318500 0 26851000 22854000 0 2208200 3393900 37636000 29832000 26927000 0 4071800 0 0 0 0 0 0 0 15327 187 14834 288073;288074;288075;288076;288077;288078;288079;288080;288081;288082;288083;288084 176949;176950 176949 2 NETNELFIPPGPR Unmodified 1482.7467 0.74669243 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 1 1 1 2 2 1 2 1 36.528 34.881 2;3 9.8016E-18 17251 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 218.52 217.53 768930000 120090000 57170000 42813000 0 0 688650 90558000 92463000 41593000 2183300 0 0 34507000 37793000 57199000 0 0 0 48334000 90725000 52815000 0 0 0 15328 561 14835 288085;288086;288087;288088;288089;288090;288091;288092;288093;288094;288095;288096;288097;288098;288099;288100;288101;288102;288103;288104 176951;176952;176953;176954;176955;176956;176957;176958;176959;176960;176961;176962;176963;176964;176965;176966;176967;176968;176969 176952 19 NEVCDTR Unmodified 892.37088 0.37087988 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 9.9801 10.806 2 0.12367 2159 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 49.57 31.803 45279000 11786000 8938400 6705400 0 0 0 0 0 0 0 0 0 1879300 1789100 0 0 0 0 3277800 4192300 6710800 0 0 0 15329 1926 14836 288105;288106;288107;288108;288109;288110;288111;288112 176970 176970 1 NEYGEYGLAAQK Unmodified 1341.6201 0.62009493 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.784 21.831 2 4.2643E-08 8883 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.99 141.84 492120000 53951000 53592000 39121000 0 0 0 53616000 55614000 52142000 0 0 0 28317000 25795000 23771000 0 0 0 36896000 36240000 33068000 0 0 0 15330 154 14837 288113;288114;288115;288116;288117;288118;288119;288120;288121;288122;288123;288124 176971;176972;176973;176974;176975;176976;176977;176978;176979;176980;176981;176982 176977 12 NEYTVPTAPAEDAPR Unmodified 1629.7635 0.76346471 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.899 24.69 2 2.2197E-13 10531 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 180.18 175.29 986620000 84810000 75325000 69988000 1764400 1476900 1672200 71341000 75220000 64768000 3128100 2898700 3644600 80337000 84549000 86912000 0 0 0 93605000 88064000 97120000 0 0 0 15331 1172 14838 288125;288126;288127;288128;288129;288130;288131;288132;288133;288134;288135;288136;288137;288138;288139;288140;288141;288142 176983;176984;176985;176986;176987;176988;176989;176990;176991;176992;176993;176994;176995;176996;176997 176997 15 NFAGGDQPSMQYIGK Unmodified 1611.7351 0.73514147 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.045 28.405 2 8.8865E-07 13326 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 120.96 114.99 67535000 0 0 0 0 0 0 5328400 7306700 6137800 3806100 4377300 3897200 5130300 4342600 3270900 0 0 0 6970100 6798800 7008300 1647500 0 1512800 15332 188 14839 288143;288144;288145;288146;288147;288148;288149;288150;288151;288152;288153;288154;288155;288156 176998;176999;177000;177001;177002;177003 177001 6 NFAPIFEDVAQER Unmodified 1534.7416 0.74160705 1018 P0AGG4 trxC Thioredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.546 43.031 2 2.4355E-12 20822 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 188.99 182.45 386040000 46903000 41789000 38524000 0 0 0 23440000 25411000 22219000 0 0 0 22879000 22878000 17861000 0 0 0 39066000 41960000 43111000 0 0 0 15333 1018 14840 288157;288158;288159;288160;288161;288162;288163;288164;288165;288166;288167;288168 177004;177005;177006;177007;177008;177009;177010;177011;177012 177006 9 NFASLSLPGLSEER Unmodified 1518.7678 0.7678218 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.082 44.594 2 3.4842E-11 21804 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 196.24 179.21 180060000 22188000 22816000 18527000 0 0 0 9408400 13015000 12362000 0 0 0 11325000 12430000 12309000 0 0 0 14788000 15923000 14964000 0 0 0 15334 953 14841 288169;288170;288171;288172;288173;288174;288175;288176;288177;288178;288179;288180 177013;177014;177015;177016;177017;177018;177019;177020;177021 177015 9 NFASYGHLMGEMPR Unmodified 1608.7177 0.71771726 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 32.997 31.361 2;3 1.6866E-26 15155 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 235.73 229.19 1455900000 107050000 86451000 86961000 4532100 3529400 6193500 141930000 143850000 145510000 23192000 21616000 22787000 104230000 100700000 95466000 0 0 0 109910000 108890000 114240000 11330000 10273000 7233300 15335 1119 14842 288181;288182;288183;288184;288185;288186;288187;288188;288189;288190;288191;288192;288193;288194;288195;288196;288197;288198;288199;288200;288201;288202;288203;288204;288205;288206;288207;288208;288209;288210;288211;288212;288213;288214;288215;288216;288217;288218;288219 177022;177023;177024;177025;177026;177027;177028;177029;177030;177031;177032;177033;177034;177035;177036;177037;177038;177039;177040;177041;177042;177043;177044;177045;177046;177047;177048;177049;177050;177051;177052 177028 31 NFDDYILGGR Unmodified 1168.5513 0.55128709 157 P07117 putP Sodium/proline symporter yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 40.661 39.021 2 0.10403 18251 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 42.599 26.937 21574000 0 0 0 932220 0 0 2983600 0 0 0 0 0 2542600 2106300 1295100 0 0 0 3503400 4933400 3277000 0 0 0 15336 157 14843 288220;288221;288222;288223;288224;288225;288226;288227 177053 177053 0 NFDEIVHDLAPENR Unmodified 1667.7903 0.79034816 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 40.048 38.381 2;3 8.7876E-35 18647 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 248.91 241.53 1097000000 210970000 198580000 181840000 393950 0 0 57256000 55519000 64180000 0 0 0 37020000 36206000 41231000 0 0 0 70187000 72628000 71035000 0 0 0 15337 1465 14844 288228;288229;288230;288231;288232;288233;288234;288235;288236;288237;288238;288239;288240;288241;288242;288243;288244;288245;288246;288247;288248;288249;288250;288251;288252 177054;177055;177056;177057;177058;177059;177060;177061;177062;177063;177064;177065;177066;177067;177068;177069;177070;177071;177072;177073;177074 177061 21 NFDIDELEALHQELEAR Unmodified 2040.9752 0.9752484 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 1 50.089 48.79 2;3 1.1165E-61 23624 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 300.98 293.26 839310000 51121000 48461000 50074000 3167700 3663200 3260400 58349000 56784000 57112000 12472000 13536000 12291000 52183000 47906000 59108000 5468000 8558900 9100300 90087000 79852000 75434000 14312000 14894000 12116000 15338 1197 14845 288253;288254;288255;288256;288257;288258;288259;288260;288261;288262;288263;288264;288265;288266;288267;288268;288269;288270;288271;288272;288273;288274;288275;288276;288277;288278;288279;288280;288281;288282;288283;288284;288285;288286;288287;288288;288289;288290 177075;177076;177077;177078;177079;177080;177081;177082;177083;177084;177085;177086;177087;177088;177089;177090;177091;177092;177093;177094;177095;177096 177088 22 NFDLSPLMR Unmodified 1091.5434 0.54336494 1034 P0C058 ibpB Small heat shock protein IbpB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.43 42.007 2 0.0059988 16842 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 72.485 66.826 27772000 0 0 0 1097300 1706900 0 0 0 0 3103000 2649200 2976200 1701500 1696200 2065000 2011500 1208100 1627200 1313600 1708700 0 1767900 0 1139600 15339 1034 14846 288291;288292;288293;288294;288295;288296;288297;288298;288299;288300;288301;288302;288303;288304;288305 177097;177098 177097 2 NFDLSPLYR Unmodified 1123.5662 0.56620887 1033 P0C054 ibpA Small heat shock protein IbpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.964 39.336 2 8.7157E-08 19588 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 186.13 178.2 291520000 7677000 0 0 5309600 5289800 4968200 19125000 22199000 14805000 32920000 32358000 29747000 8597600 10828000 9895400 5374900 4033200 4361000 14732000 15832000 14366000 10793000 8763400 9544400 15340 1033 14847 288306;288307;288308;288309;288310;288311;288312;288313;288314;288315;288316;288317;288318;288319;288320;288321;288322;288323;288324;288325;288326;288327;288328 177099;177100;177101;177102;177103;177104;177105;177106;177107;177108;177109;177110;177111;177112;177113;177114;177115;177116 177102 18 NFDNIQK Unmodified 877.42938 0.42938104 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 13.715 14.603 2 0.020298 4610 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 76.847 62.183 91655000 0 0 0 0 0 0 8588900 11523000 10876000 0 0 0 8942100 8296000 6680300 0 0 0 12202000 13302000 11245000 0 0 0 15341 1067 14848 288329;288330;288331;288332;288333;288334;288335;288336;288337 177117;177118;177119;177120;177121 177117 5 NFDNMREDEGLADR Unmodified 1680.7162 0.71619694 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 22.282 22.058 2;3 5.5101E-68 9056 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 333.77 333.77 25439000000 2879400000 2388600000 2317100000 29900000 27906000 26287000 2232800000 2179300000 2204700000 20633000 19708000 17043000 1576200000 1382700000 1358000000 11868000 9855100 8920000 2182400000 2168200000 2355700000 16034000 11992000 14005000 15342 827 14849 288338;288339;288340;288341;288342;288343;288344;288345;288346;288347;288348;288349;288350;288351;288352;288353;288354;288355;288356;288357;288358;288359;288360;288361;288362;288363;288364;288365;288366;288367;288368;288369;288370;288371;288372;288373;288374;288375;288376;288377;288378;288379;288380;288381;288382;288383;288384;288385;288386 177122;177123;177124;177125;177126;177127;177128;177129;177130;177131;177132;177133;177134;177135;177136;177137;177138;177139;177140;177141;177142;177143;177144;177145;177146;177147;177148;177149;177150;177151;177152;177153;177154;177155;177156;177157;177158;177159;177160;177161;177162;177163;177164 177152 42 NFDNMREDEGLADR Oxidation (M) 1696.7111 0.71111156 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 1 1 4 3 5 2 4 3 4 3 2 16.573 17.321 2;3 1.1134E-05 6240 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.09 107.09 445700000 37230000 52619000 50934000 427600 388840 0 64508000 38516000 52694000 0 0 0 14758000 24083000 14492000 0 0 0 42370000 28185000 24495000 0 0 0 15343 827 14849 288387;288388;288389;288390;288391;288392;288393;288394;288395;288396;288397;288398;288399;288400;288401;288402;288403;288404;288405;288406;288407;288408;288409;288410;288411;288412;288413;288414;288415;288416;288417;288418;288419;288420;288421;288422;288423;288424;288425;288426;288427;288428;288429;288430;288431 177165;177166;177167;177168;177169;177170;177171;177172;177173;177174;177175;177176;177177;177178;177179;177180;177181;177182;177183;177184;177185;177186;177187;177188;177189;177190;177191;177192;177193;177194 177173 390 30 NFEPQHSVFK Unmodified 1231.5986 0.59857163 117 P05719 hsdS Type-1 restriction enzyme EcoKI specificity protein yes yes 0 0 0 By MS/MS 1 18.158 18.709 2 0.022636 7020 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.019 50.625 4074700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4074700 0 0 0 0 0 15344 117 14850 288432 177195 177195 1 NFFDHVDIPAENINLLNGNAPDIDAECR Unmodified 3182.4727 0.47272578 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 53.228 51.808 3 4.4728E-23 25622 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 173.36 173.36 363070000 53364000 53761000 46877000 0 0 0 32805000 0 28096000 0 0 0 17967000 22192000 20582000 0 0 0 31600000 29440000 26387000 0 0 0 15345 313 14851 288433;288434;288435;288436;288437;288438;288439;288440;288441;288442;288443 177196;177197;177198;177199;177200;177201;177202 177199 7 NFFEEDLQIR Unmodified 1309.6303 0.63026569 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.707 41.011 2 4.6476E-07 19306 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 175.44 170.83 2065100000 215480000 184750000 170130000 0 1556300 1735300 156410000 131490000 131430000 0 0 0 180040000 156210000 163380000 0 0 0 197960000 186770000 187790000 0 0 0 15346 183 14852 288444;288445;288446;288447;288448;288449;288450;288451;288452;288453;288454;288455;288456;288457 177203;177204;177205;177206;177207;177208;177209;177210;177211;177212;177213;177214 177212 11 NFFEQLGVPTHLSDYGLDGSSIPALLK Unmodified 2917.4862 0.48617422 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.799 53.347 3 3.6249E-11 26450 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 127.66 126.89 817330000 60773000 0 29103000 0 0 0 97582000 102930000 77124000 0 0 0 78045000 68515000 72304000 0 0 0 85021000 66943000 78996000 0 0 0 15347 1959 14853 288458;288459;288460;288461;288462;288463;288464;288465;288466;288467;288468 177215;177216;177217;177218;177219;177220;177221;177222;177223;177224 177216 10 NFGGEQAAR Unmodified 948.44134 0.44134271 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 11.408 12.437 2 1.5211E-05 3304 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.61 135.94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15348 698 14854 288469;288470;288471;288472 177225;177226;177227;177228 177225 4 NFGKHPVTPWGVQTK Unmodified 1694.8893 0.88927434 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 1 2 3 3 3 19.138 19.25 2;3;4 0.00013398 5754 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 76.156 71.913 432520000 0 0 0 27303000 22769000 24342000 0 0 0 36983000 31827000 31945000 0 0 0 63548000 42730000 40354000 0 0 0 40351000 38187000 32185000 15349 1620 14855 288473;288474;288475;288476;288477;288478;288479;288480;288481;288482;288483;288484;288485;288486;288487;288488;288489;288490;288491;288492;288493;288494;288495;288496;288497;288498;288499 177229;177230;177231;177232;177233;177234;177235;177236;177237;177238;177239;177240;177241;177242;177243;177244;177245 177240 17 NFGLYNER Unmodified 1011.4774 0.47739386 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 24.16 23.234 2 0.000824 9684 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 121.62 105.15 2131900000 216460000 213440000 209780000 1068300 626520 804330 243960000 220350000 220720000 0 445720 0 116530000 126500000 120620000 0 0 0 145800000 140160000 154640000 0 0 0 15350 31 14856 288500;288501;288502;288503;288504;288505;288506;288507;288508;288509;288510;288511;288512;288513;288514;288515;288516;288517 177246;177247;177248;177249;177250;177251;177252;177253 177253 3 NFGMPAPEGYR Unmodified 1237.555 0.55499226 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30 28.439 2 7.5327E-06 13111 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 149.82 149.82 866740000 66124000 63666000 54316000 0 0 603490 74313000 72499000 72003000 1668900 1934400 1567100 67482000 64356000 61710000 0 0 0 83580000 90294000 83848000 2483000 1964500 2331200 15351 651 14857 288518;288519;288520;288521;288522;288523;288524;288525;288526;288527;288528;288529;288530;288531;288532;288533;288534;288535;288536 177254;177255;177256;177257;177258;177259;177260;177261;177262;177263;177264;177265 177259 12 NFGMPAPEGYRK Unmodified 1365.65 0.64995528 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.453 21.457 3 0.0085118 7022 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 57.175 53.643 114180000 5787600 4423900 4878600 1605300 1891100 1645300 5425600 7647000 6008500 6475700 5170700 4102200 0 0 0 2349400 2938300 0 6970200 5390600 12580000 10361000 8576000 9949100 15352 651 14858 288537;288538;288539;288540;288541;288542;288543;288544;288545;288546;288547;288548;288549;288550;288551;288552;288553;288554;288555;288556;288557 177266;177267;177268;177269;177270;177271;177272;177273 177269 7 NFGSGWTWLVK Unmodified 1293.6506 0.6506072 1008 P0AGD3 sodB Superoxide dismutase [Fe] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 1 1 1 1 2 1 1 2 2 50.532 49.188 2 4.6491E-06 23024 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 103.55 97.242 4878200000 463610000 444940000 389240000 4152200 3283300 3820500 581790000 663020000 624090000 0 0 0 344200000 2198500 0 0 0 0 472790000 472620000 408420000 0 0 0 15353 1008 14859 288558;288559;288560;288561;288562;288563;288564;288565;288566;288567;288568;288569;288570;288571;288572;288573;288574;288575;288576;288577 177274;177275;177276;177277;177278;177279;177280;177281;177282;177283;177284;177285;177286;177287;177288 177287 15 NFHNLADMPNIDVIDGQAEFINNHSLR Unmodified 3093.4727 0.4726662 1886 P77212 rclA Probable pyridine nucleotide-disulfide oxidoreductase RclA yes yes 0 0 0 By MS/MS By matching By MS/MS 2 1 2 47.134 45.888 3;4 8.1214E-08 22493 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.11 103.86 108210000 42058000 27718000 38438000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15354 1886 14860 288578;288579;288580;288581;288582 177289;177290;177291 177289 3 NFIDAIIK Unmodified 932.53312 0.53311783 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.948 42.453 2 0.0034319 19895 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 92.187 71.632 9399500000 693640000 677600000 625750000 13419000 10222000 12153000 902300000 780630000 743410000 29197000 25904000 18594000 655520000 567780000 543880000 33498000 24879000 28762000 915080000 1119000000 931330000 14581000 16715000 15659000 15355 396 14861 288583;288584;288585;288586;288587;288588;288589;288590;288591;288592;288593;288594;288595;288596;288597;288598;288599;288600;288601;288602;288603;288604;288605;288606 177292;177293;177294;177295;177296;177297;177298;177299;177300;177301;177302;177303;177304;177305;177306;177307;177308;177309;177310;177311;177312;177313;177314;177315;177316;177317;177318;177319;177320;177321;177322 177319 31 NFIEGDKVNQGDSLYQIDPAPLQAELNSAK Unmodified 3273.6154 0.61535049 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 47.879 46.068 3 9.5824E-12 18401 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 127.59 125.73 34234000 0 6384000 0 2001400 0 0 0 0 0 9796700 7209000 8843300 0 0 0 0 0 0 0 0 0 0 0 0 15356 1477 14862 288607;288608;288609;288610;288611 177323;177324;177325 177325 3 NFITLFTGNETSDTWFNAAIAMNKPWSEK Unmodified 3332.5812 0.58121359 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 54.94 54.996 3 1.3048E-66 21499 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 250.95 248.92 449900000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123110000 168600000 158190000 0 0 0 0 0 0 15357 36 14863 288612;288613;288614 177326;177327;177328 177326 3 NFKEGSDIEAGVSLYQIDPATYQATYDSAK Unmodified 3280.5412 0.5411825 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 46.019 43.702 3 3.0328E-08 17543 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 103.68 101.77 16621000 0 0 0 0 0 0 0 0 0 5024500 6991400 4605400 0 0 0 0 0 0 0 0 0 0 0 0 15358 826 14864 288615;288616;288617 177329;177330 177329 2 NFKPGFR Unmodified 864.46062 0.46062159 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 13.2 14.08 2 0.11846 4374 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 59.641 32.845 425700000 34844000 35348000 33450000 0 0 0 0 52082000 44328000 0 0 0 43570000 38447000 38539000 0 0 0 41867000 27865000 35361000 0 0 0 15359 671 14865 288618;288619;288620;288621;288622;288623;288624;288625;288626;288627;288628 177331 177331 1 NFLDYCR Unmodified 986.428 0.42800083 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 1 2 2 2 28.673 27.416 1;2 1.7197E-05 12829 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 155.51 109.16 6549600000 792490000 690020000 475170000 1370100 1853500 1494600 563300000 541030000 502770000 0 878920 0 400760000 408890000 467070000 802300 0 0 577140000 643120000 481440000 0 0 0 15360 1222 14866 288629;288630;288631;288632;288633;288634;288635;288636;288637;288638;288639;288640;288641;288642;288643;288644;288645;288646;288647;288648;288649;288650;288651;288652;288653;288654;288655;288656;288657 177332;177333;177334;177335;177336;177337;177338;177339;177340;177341;177342;177343 177335 11 NFLVPQGK Unmodified 901.50215 0.50215205 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 23.8 22.995 1;2 0.0068847 10246 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.244 81.26 5581000000 676200000 688730000 601840000 42855000 39394000 32018000 249370000 252950000 256690000 44114000 44112000 46194000 318950000 277830000 266570000 47704000 32167000 32365000 491650000 477400000 494300000 58932000 51500000 57137000 15361 364 14867 288658;288659;288660;288661;288662;288663;288664;288665;288666;288667;288668;288669;288670;288671;288672;288673;288674;288675;288676;288677;288678;288679;288680;288681;288682;288683;288684;288685;288686;288687;288688;288689;288690;288691;288692;288693;288694;288695;288696;288697;288698;288699;288700;288701;288702;288703;288704;288705 177344;177345;177346;177347;177348;177349;177350;177351;177352;177353;177354;177355;177356;177357;177358;177359;177360;177361;177362;177363 177351 19 NFNDDVGPYEQSLVGTPVADPNKPLEVVR Unmodified 3168.5728 0.5727574 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 2 2 2 1 2 2 1 2 1 2 2 1 1 46.363 44.727 3;4 1.8426E-41 22220 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 213.05 210.92 1447500000 8434700 6499100 0 1404500 1161400 0 123740000 114050000 131120000 38037000 24711000 35037000 155750000 107770000 120900000 7139400 0 0 192750000 203120000 150740000 0 0 25141000 15362 723 14868 288706;288707;288708;288709;288710;288711;288712;288713;288714;288715;288716;288717;288718;288719;288720;288721;288722;288723;288724;288725;288726;288727;288728;288729;288730;288731;288732 177364;177365;177366;177367;177368;177369;177370;177371;177372;177373;177374;177375 177368 11 NFPGTLDYAEQQR Unmodified 1537.7161 0.71612058 103 P04995 sbcB Exodeoxyribonuclease I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.564 30.207 2 4.7208E-05 14161 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 95.81 85.578 57246000 7452600 5656900 5244200 0 0 0 4192200 4938400 4060900 0 0 0 4116500 3346300 3632300 0 0 0 5322100 4232400 5051100 0 0 0 15363 103 14869 288733;288734;288735;288736;288737;288738;288739;288740;288741;288742;288743;288744 177376;177377;177378;177379;177380;177381;177382;177383;177384;177385 177380 2 NFPMIPGIDFAGTVR Unmodified 1633.8286 0.82864792 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.304 52.856 2 3.4333E-16 24876 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 202.16 194.35 918570000 84521000 74796000 97244000 0 0 0 103100000 89400000 79713000 0 0 0 69347000 68392000 77307000 0 0 0 58632000 62632000 53487000 0 0 0 15364 1284 14870 288745;288746;288747;288748;288749;288750;288751;288752;288753;288754;288755;288756 177386;177387;177388;177389;177390;177391;177392;177393;177394;177395 177395 10 NFQFASHMVMFDLPFNPDLLEQR Oxidation (M) 2811.3149 0.31489191 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 54.574 53.504 3 1.3608E-15 20399 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 152.27 151.39 508150000 0 5448600 0 0 0 0 0 0 0 45640000 33703000 32115000 3315200 0 0 85713000 67077000 77427000 0 2673000 0 129100000 0 25940000 15365 1616 14871 288757;288758;288759;288760;288761;288762;288763;288764;288765;288766;288767;288768 177396;177397;177398;177399;177400;177401;177402;177403 177398 565;566 8 NFQFASHMVMFDLPFNPDLLEQR Unmodified 2795.32 0.31997729 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 3 3 3 3 3 3 1 3 3 3 54.918 53.872 2;3;4 7.2695E-103 21471 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 424.06 419.67 11636000000 6570300 6097000 0 0 0 0 10600000 0 9681000 1403300000 1504800000 1253000000 0 0 0 1199000000 1957700000 1821700000 20849000 0 0 867080000 776160000 799880000 15366 1616 14871 288769;288770;288771;288772;288773;288774;288775;288776;288777;288778;288779;288780;288781;288782;288783;288784;288785;288786;288787;288788;288789;288790;288791;288792;288793;288794;288795;288796;288797;288798;288799;288800 177404;177405;177406;177407;177408;177409;177410;177411;177412;177413;177414;177415;177416;177417;177418;177419;177420;177421;177422;177423 177417 18 NFQFASHMVMFDLPFNPDLLEQR 2 Oxidation (M) 2827.3098 0.30980653 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 2 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 53.494 52.797 3 2.8379E-10 19796 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 126.04 125.85 94294000 0 0 0 0 0 0 0 0 0 0 13935000 10219000 0 0 0 20434000 18914000 22120000 0 0 0 0 0 8671600 15367 1616 14871 288801;288802;288803;288804;288805;288806 177424;177425;177426;177427 177425 565;566 4 NFSIIAHIDHGK Unmodified 1350.7044 0.70443369 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 3 3 3 22.783 22.247 2;3 2.0315E-06 9853 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 156.48 144.43 998630000 54776000 61185000 68507000 19519000 21644000 18773000 43101000 40376000 40337000 0 0 3101500 50128000 27395000 36894000 61556000 53788000 54263000 60542000 51876000 58640000 61790000 55773000 54664000 15368 1633 14872 288807;288808;288809;288810;288811;288812;288813;288814;288815;288816;288817;288818;288819;288820;288821;288822;288823;288824;288825;288826;288827;288828;288829;288830;288831;288832;288833;288834;288835;288836;288837;288838;288839;288840;288841;288842;288843;288844;288845;288846;288847;288848;288849;288850;288851;288852 177428;177429;177430;177431;177432;177433;177434;177435;177436;177437;177438;177439;177440;177441;177442;177443;177444;177445;177446;177447;177448;177449;177450;177451;177452;177453;177454;177455;177456 177437 29 NFTQCDSMLIGANCGAHTFPYVECR Unmodified 2947.251 0.2509878 1911 P77522 sufB FeS cluster assembly protein SufB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.091 40.392 3 0.007057 19740 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 59.678 57.101 103670000 10278000 11906000 10880000 0 0 0 10363000 10886000 9190600 0 0 0 5767200 6155200 3355700 0 0 0 8135900 7667600 9079600 0 0 0 15369 1911 14873 288853;288854;288855;288856;288857;288858;288859;288860;288861;288862;288863;288864 177457 177457 0 NFVFDER Unmodified 925.42938 0.42938104 1238 P24188 yceA UPF0176 protein YceA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 27.983 26.808 2 0.0023307 12275 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.19 106.77 98177000 3266300 2506900 0 0 0 0 3624100 3757200 0 0 0 0 7124000 6874400 7184400 0 0 0 22798000 19658000 20445000 0 0 937800 15370 1238 14874 288865;288866;288867;288868;288869;288870;288871;288872;288873;288874;288875 177458 177458 1 NFVLSHTDLMGSVSTPFAPIVNTATSLKPVR Unmodified 3298.7384 0.73838294 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 1 1 1 1 1 51.727 50.513 3;4 3.1713E-24 24889 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.75 155.96 556460000 0 0 0 0 0 0 82127000 68407000 70728000 39299000 39273000 50796000 39287000 41972000 28614000 10518000 0 7518400 18095000 18907000 16804000 7873300 7184000 9053000 15371 500 14875 288876;288877;288878;288879;288880;288881;288882;288883;288884;288885;288886;288887;288888;288889;288890;288891;288892;288893;288894;288895;288896;288897;288898;288899 177459;177460;177461;177462;177463;177464;177465;177466;177467;177468;177469;177470;177471 177465 12 NFYYFQMLK Unmodified 1252.5951 0.59506616 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.899 45.637 2 0.0020622 16969 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 86.472 78.541 166330000 5352300 5055000 5169200 1716500 1375900 1445100 0 0 0 4736200 3827000 3443000 5469100 4200300 5556200 42127000 29924000 24913000 5097100 6166000 4353200 1637800 2704900 2066200 15372 222 14876 288900;288901;288902;288903;288904;288905;288906;288907;288908;288909;288910;288911;288912;288913;288914;288915;288916;288917;288918;288919;288920 177472;177473;177474;177475;177476 177472 3 NGADFGK Unmodified 707.32385 0.32385333 688;534 P0A9L5;P0ABZ6 ppiC;surA Peptidyl-prolyl cis-trans isomerase C;Chaperone SurA no no 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.037 11.905 2 0.10298 2839 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 53.351 46.965 351950000 43532000 48016000 39918000 0 1294300 0 0 0 0 0 0 0 33752000 28990000 25489000 0 0 0 48936000 39023000 42997000 0 0 0 15373 534;688 14877 288921;288922;288923;288924;288925;288926;288927;288928;288929;288930 177477 177477 1 NGAEGVGLYR Unmodified 1034.5145 0.51450765 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.428 19.577 2 6.6933E-07 7454 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 173.23 163.65 3097900000 191600000 171370000 33267000 0 3938800 0 323010000 322660000 371570000 11412000 7772300 7248000 0 326340000 275810000 2630500 3018100 2744900 339370000 336550000 354190000 4492800 4316400 4609800 15374 192 14878 288931;288932;288933;288934;288935;288936;288937;288938;288939;288940;288941;288942;288943;288944;288945;288946;288947;288948;288949;288950;288951;288952;288953;288954 177478;177479;177480;177481;177482;177483;177484;177485;177486;177487;177488;177489;177490;177491;177492;177493;177494 177482 15 NGAGIENYNFITTAGLK Unmodified 1781.8948 0.89481323 209 P09169 ompT Protease 7 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.559 41.823 2 3.7244E-06 16468 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 90.731 85.072 45451000 4014500 5880600 3946700 1851200 2082800 1981400 0 0 0 2568000 2167300 1659300 0 1720400 1768600 0 0 0 0 4207200 3898900 2523500 2769800 2411100 15375 209 14879 288955;288956;288957;288958;288959;288960;288961;288962;288963;288964;288965;288966;288967;288968;288969;288970 177495 177495 1 NGALNAAIVGQPAYK Unmodified 1485.794 0.79397698 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 29.267 27.809 2;3 2.9212E-11 10533 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 178.84 132.38 2340800000 177590000 177020000 171140000 87722000 97104000 97675000 275860000 294610000 265080000 65868000 8158300 6779100 81351000 83237000 87091000 0 0 0 93228000 82090000 87244000 8340600 84191000 9429000 15376 548 14880 288971;288972;288973;288974;288975;288976;288977;288978;288979;288980;288981;288982;288983;288984;288985;288986;288987;288988;288989;288990;288991;288992;288993;288994;288995;288996;288997;288998;288999;289000;289001;289002;289003;289004;289005;289006;289007;289008;289009;289010 177496;177497;177498;177499;177500;177501;177502;177503;177504;177505;177506;177507;177508;177509;177510;177511;177512;177513;177514;177515;177516;177517;177518;177519;177520;177521;177522 177497 26 NGANAIYSGASEIATGNNDLSSR Unmodified 2281.0571 0.057080547 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 34.555 32.936 2;3 3.8438E-10 11459 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 168.41 164.61 42299000 0 0 0 13295000 14580000 14424000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15377 76 14881 289011;289012;289013;289014;289015;289016 177523;177524;177525;177526;177527;177528 177526 6 NGASLGEMIK Unmodified 1018.5117 0.51173046 1535 P39396 yjiY Inner membrane protein YjiY yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 24.576 23.488 2 0.0033493 10285 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.573 54.767 22945000 0 0 0 0 0 0 0 6479800 3385100 0 0 0 0 0 0 0 0 0 4797200 0 8283000 0 0 0 15378 1535 14882 289017;289018;289019;289020 177529 177529 1 NGCGFTFGDGCHGSDTK Unmodified 1815.6941 0.69408129 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 1 1 2 2 2 2 2 18.603 18.887 2;3 1.8527E-08 5560 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 141.38 141.38 214500000 0 0 0 1558400 1527700 1335100 6856600 9300000 7945100 12719000 12346000 10657000 7122900 6214800 7352000 0 0 1476500 9593300 15939000 23970000 27768000 24972000 25851000 15379 1067 14883 289021;289022;289023;289024;289025;289026;289027;289028;289029;289030;289031;289032;289033;289034;289035;289036;289037;289038;289039;289040;289041;289042;289043;289044;289045;289046;289047 177530;177531;177532;177533;177534;177535;177536;177537 177537 8 NGDMLNQPSTPQPDIPLK Unmodified 1963.9673 0.96732625 818 P0ADX7 yhhA Uncharacterized protein YhhA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 36.617 34.954 2 2.0397E-22 16917 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 193.34 184.05 87002000 25659000 19505000 23570000 0 0 0 5191700 6358000 6718100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15380 818 14884 289048;289049;289050;289051;289052;289053 177538;177539;177540 177538 3 NGDSLTLRPEGTAGCVR Unmodified 1801.8741 0.87409456 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 20.329 20.737 2;3 4.8784E-07 8243 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 106.36 104.05 629040000 51665000 45710000 46533000 533710 569260 432540 45891000 44645000 46936000 0 0 0 48638000 47103000 42204000 0 0 0 68366000 68561000 71256000 0 0 0 15381 1634 14885 289054;289055;289056;289057;289058;289059;289060;289061;289062;289063;289064;289065;289066;289067;289068;289069;289070;289071;289072;289073;289074;289075;289076;289077;289078;289079;289080 177541;177542;177543;177544;177545;177546;177547;177548;177549;177550;177551;177552;177553;177554 177543 14 NGDTSNGVELGK Unmodified 1189.5575 0.55749468 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.499 14.156 2 2.125E-06 4407 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.96 132.74 120790000 6828600 10247000 8344100 0 1330000 1719500 8169300 8312100 9308600 3808000 2743800 3104700 7627700 9917900 8752500 0 0 728500 8861300 7338000 9835100 1733300 1106900 969400 15382 244 14886 289081;289082;289083;289084;289085;289086;289087;289088;289089;289090;289091;289092;289093;289094;289095;289096;289097;289098;289099;289100;289101 177555;177556;177557;177558;177559;177560;177561;177562;177563 177561 7 NGEDPVAIR Unmodified 969.48796 0.48795855 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.854 17.519 2 0.0011292 5010 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 92.439 87.584 383190000 33609000 29677000 23863000 2647700 0 0 0 0 28681000 0 0 0 23707000 19997000 22498000 0 0 0 64655000 61795000 59320000 5162100 4453400 3123000 15383 698 14887 289102;289103;289104;289105;289106;289107;289108;289109;289110;289111;289112;289113;289114;289115 177564;177565;177566 177564 2 NGEDPVAIRK Unmodified 1097.5829 0.58292157 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 1 1 1 1 2 1 1 1 1 1 1 2 2 1 12.029 12.704 2;3 4.6006E-05 2951 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 157.91 154.5 361600000 40638000 40279000 75824000 21759000 21761000 23214000 0 4657300 0 6769100 5764100 5535100 7689300 15794000 5135500 0 579980 4903100 7031700 9580200 6068100 27391000 22415000 8814300 15384 698 14888 289116;289117;289118;289119;289120;289121;289122;289123;289124;289125;289126;289127;289128;289129;289130;289131;289132;289133;289134;289135;289136;289137;289138;289139;289140;289141;289142;289143 177567;177568;177569;177570;177571;177572;177573;177574;177575;177576;177577;177578 177570 12 NGEFIEITEK Unmodified 1178.5819 0.58191851 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 29.498 28.227 2 3.1408E-06 13074 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187.82 174.84 11394000000 993670000 974500000 997270000 0 1893300 0 1139600000 1119000000 1115200000 0 0 0 707130000 655480000 605230000 0 0 0 1048700000 1018900000 1017400000 0 0 0 15385 827 14889 289144;289145;289146;289147;289148;289149;289150;289151;289152;289153;289154;289155;289156 177579;177580;177581;177582;177583;177584;177585;177586;177587;177588;177589;177590;177591;177592;177593;177594;177595;177596;177597;177598;177599;177600;177601;177602;177603;177604 177592 26 NGEFIEITEKDTEGR Unmodified 1736.8217 0.82170787 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 1 2 1 1 2 2 2 1 26.751 25.601 2;3 2.5771E-56 11649 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 303.51 301.76 1579000000 168340000 143100000 134300000 4162400 0 7563000 174860000 176780000 169390000 6326900 7337600 8685500 84391000 19338000 13120000 4651200 3329400 3748300 165180000 141910000 138130000 4345500 0 0 15386 827 14890 289157;289158;289159;289160;289161;289162;289163;289164;289165;289166;289167;289168;289169;289170;289171;289172;289173;289174;289175;289176;289177;289178;289179;289180;289181;289182;289183;289184;289185;289186;289187;289188;289189;289190;289191 177605;177606;177607;177608;177609;177610;177611;177612;177613;177614;177615;177616;177617 177608 12 NGELVVPAPEKPVPQGAAK Unmodified 1900.0418 0.04181182 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 23.981 22.856 3 0.0044082 7287 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 49.993 49.415 16093000 0 0 0 2176200 2228900 2003800 0 0 0 3542800 3491400 0 0 0 0 0 0 0 0 0 0 2650400 0 0 15387 1115 14891 289192;289193;289194;289195;289196;289197 177618 177618 1 NGENALAFYSHYYQPLPLVLR Unmodified 2464.2539 0.25392986 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 52.428 51.185 3 3.3202E-15 25048 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.17 138.19 265350000 50832000 47139000 38490000 2374300 2668500 2568600 5548200 4908200 6507100 0 0 0 9252600 9066100 10564000 0 0 0 22576000 24421000 28434000 0 0 0 15388 34 14892 289198;289199;289200;289201;289202;289203;289204;289205;289206;289207;289208;289209;289210;289211;289212;289213 177619;177620;177621;177622;177623 177622 5 NGERDIDALVEQAR Unmodified 1584.7856 0.78559713 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 28.61 27.158 3 3.3037E-06 9151 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 88.075 69.252 11709000 0 0 0 5121200 3563200 3024300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15389 613 14893 289214;289215;289216 177624;177625;177626 177624 3 NGETYPVQDDAHWLER Unmodified 1928.8653 0.86530402 260 P0A6L7 uxaB Altronate oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 31.84 30.464 3 0.022304 14761 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 44.005 41.861 41465000 0 2560300 2047900 0 0 0 9496100 9800000 7299300 0 0 0 3097600 3726600 3437100 0 0 0 0 0 0 0 0 0 15390 260 14894 289217;289218;289219;289220;289221;289222;289223;289224 177627 177627 0 NGEVAATK Unmodified 788.40283 0.40283194 571 P0AA25 trxA Thioredoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 1 1 2 2 2 2 2 4.7878 5.6833 2 0.053903 1111 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 63.673 56.522 1114400000 0 0 0 0 0 0 132770000 132970000 128380000 0 0 0 105010000 103680000 96675000 0 0 0 139910000 137220000 137750000 0 0 0 15391 571 14895 289225;289226;289227;289228;289229;289230;289231;289232;289233;289234;289235;289236;289237;289238;289239;289240 177628;177629 177629 0 NGEVAPPKEDPVPLPELPCEK Unmodified 2314.1515 0.1514982 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.514 35.041 3 0.00013164 16796 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 69.818 68.06 379010000 27928000 27931000 21067000 1189900 1104800 633430 26465000 25410000 27160000 4261100 0 0 29423000 25064000 36393000 7053000 4434700 4500500 37906000 26037000 34911000 0 4748500 5387900 15392 124 14896 289241;289242;289243;289244;289245;289246;289247;289248;289249;289250;289251;289252;289253;289254;289255;289256;289257;289258;289259;289260;289261 177630;177631;177632;177633;177634;177635;177636;177637 177634 8 NGEWQNDVGAASSIYEEYYQK Unmodified 2450.0662 0.066248249 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 2 2 2 2 2 2 2 2 2 2 46.734 45.368 2;3 1.8947E-15 21242 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 189.37 189.17 215420000 9994900 19533000 12582000 0 0 0 12578000 10533000 0 0 0 0 31104000 23625000 20589000 0 0 0 26682000 25982000 22218000 0 0 0 15393 951 14897 289262;289263;289264;289265;289266;289267;289268;289269;289270;289271;289272;289273;289274;289275;289276;289277;289278;289279;289280;289281;289282 177638;177639;177640 177640 1 NGEYTYIINTTSGR Unmodified 1587.7529 0.75290002 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 31.461 30.245 2 5.9291E-27 14045 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 244.06 238.06 278080000 64819000 70178000 59132000 0 0 0 0 0 0 0 0 0 0 0 8372400 0 0 0 25898000 24374000 25309000 0 0 0 15394 65 14898 289283;289284;289285;289286;289287;289288;289289 177641;177642;177643;177644;177645;177646 177645 4 NGFAGYPVVTEENELVGIITGR Unmodified 2334.1856 0.18557552 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 2 1 1 2 1 2 2 2 1 55.047 53.571 2;3 4.461E-11 26261 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 188 187.72 545340000 40575000 43105000 37445000 0 0 0 29894000 19550000 22271000 0 0 0 66055000 22244000 62149000 0 0 0 80017000 75576000 46461000 0 0 0 15395 788 14899 289290;289291;289292;289293;289294;289295;289296;289297;289298;289299;289300;289301;289302;289303;289304;289305;289306 177647;177648;177649;177650 177647 4 NGFLLDGFPR Unmodified 1134.5822 0.58219329 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 2 1 46.222 44.707 2 4.5015E-13 21828 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 202.28 172.11 2356600000 0 248240000 234060000 2780300 1825100 0 200330000 192210000 195450000 0 0 0 195070000 196650000 186930000 0 0 0 225790000 236850000 240450000 0 0 0 15396 1733 14900 289307;289308;289309;289310;289311;289312;289313;289314;289315;289316;289317;289318;289319;289320;289321;289322 177651;177652;177653;177654;177655;177656;177657;177658;177659;177660;177661;177662;177663;177664;177665 177659 15 NGFSCQIETSGTHEVR Unmodified 1820.8112 0.81115996 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.137 18.752 3 0.00010191 6592 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 75.018 72.04 172050000 15535000 13036000 11405000 0 0 0 11499000 13097000 15971000 0 0 0 13197000 11656000 9086900 0 0 0 16979000 19115000 21470000 0 0 0 15397 1685 14901 289323;289324;289325;289326;289327;289328;289329;289330;289331;289332;289333;289334 177666 177666 1 NGGGVILTITSMAAENK Unmodified 1674.8611 0.86107026 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 44.351 43.376 2 6.6304E-09 21291 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.71 118.28 105160000 34207000 30129000 26914000 0 0 0 0 0 0 0 0 0 2514800 3686900 2924200 2464300 0 2322900 0 0 0 0 0 0 15398 886 14902 289335;289336;289337;289338;289339;289340;289341;289342 177667;177668;177669 177667 3 NGHLFVTDGVVK Unmodified 1284.6826 0.68263561 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 23.337 22.595 3 0.00040452 6710 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 62.338 56.836 58231000 0 0 0 0 1008200 0 0 0 0 4353700 2366600 3282800 0 0 0 13605000 14601000 15692000 0 0 0 0 0 3321800 15399 395 14903 289343;289344;289345;289346;289347;289348;289349;289350 177670;177671;177672 177671 3 NGHVVIAGDGQATLGNTVMK Unmodified 1981.0051 0.005108738 329 P0A7B8 hslV ATP-dependent protease subunit HslV yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.711 24.618 3 1.6272E-07 11316 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.91 102.25 264640000 0 26533000 2921100 0 0 2001200 29088000 26836000 33261000 0 0 0 28640000 20153000 23840000 0 0 0 34613000 1994400 34754000 0 0 0 15400 329 14904 289351;289352;289353;289354;289355;289356;289357;289358;289359;289360;289361;289362 177673;177674;177675;177676;177677;177678 177673 6 NGIEIEHACEK Unmodified 1298.5925 0.59249998 550 P0A9R4 fdx 2Fe-2S ferredoxin yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 12.944 13.814 2 0.019624 4241 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 59.067 57.259 65979000 13783000 13400000 10807000 0 0 0 0 0 0 0 0 0 12413000 6470700 9105700 0 0 0 0 0 0 0 0 0 15401 550 14905 289363;289364;289365;289366;289367;289368 177679;177680 177679 2 NGIIDLK Unmodified 771.44905 0.44905385 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.066 24.069 2 0.0059278 10213 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 97.602 69.073 622140000 84389000 69992000 74443000 2754100 0 0 36197000 42369000 43301000 0 0 0 36203000 30615000 34160000 0 0 0 52256000 56016000 59443000 0 0 0 15402 228 14906 289369;289370;289371;289372;289373;289374;289375;289376;289377;289378;289379;289380;289381 177681;177682;177683;177684;177685;177686;177687;177688;177689 177688 9 NGIIHTTIGK Unmodified 1052.5978 0.59784335 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 14.917 15.453 2;3 1.0162E-05 5076 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.97 144.06 2665700000 561620000 236400000 232330000 20389000 20036000 24261000 113490000 118760000 104680000 37799000 35301000 31752000 134870000 115330000 109320000 31877000 26921000 26398000 209150000 192390000 219490000 19090000 23024000 21076000 15403 353 14907 289382;289383;289384;289385;289386;289387;289388;289389;289390;289391;289392;289393;289394;289395;289396;289397;289398;289399;289400;289401;289402;289403;289404;289405;289406;289407;289408;289409;289410;289411;289412;289413;289414;289415;289416;289417;289418;289419;289420;289421;289422;289423;289424;289425;289426;289427;289428;289429;289430 177690;177691;177692;177693;177694;177695;177696;177697;177698;177699;177700;177701;177702;177703;177704;177705;177706;177707;177708;177709;177710;177711;177712;177713 177708 24 NGKGEVDDIDHLGNR Unmodified 1637.7758 0.77576073 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 1 1 2 3 3 3 3 3 1 3 3 3 1 2 3 3 3 3 14.796 15.272 2;3;4 1.4605E-68 4029 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 327.18 320.89 7214200000 26201000 27740000 22564000 2644900 3359200 2918400 14858000 20766000 16077000 615700000 518130000 558150000 25078000 25346000 15039000 994270000 891370000 1401100000 20529000 25741000 38866000 636470000 629990000 681320000 15404 463 14908 289431;289432;289433;289434;289435;289436;289437;289438;289439;289440;289441;289442;289443;289444;289445;289446;289447;289448;289449;289450;289451;289452;289453;289454;289455;289456;289457;289458;289459;289460;289461;289462;289463;289464;289465;289466;289467;289468;289469;289470;289471;289472;289473;289474;289475;289476;289477;289478;289479;289480;289481;289482;289483;289484;289485;289486;289487 177714;177715;177716;177717;177718;177719;177720;177721;177722;177723;177724;177725;177726;177727;177728;177729;177730;177731;177732;177733;177734;177735;177736;177737;177738;177739;177740;177741;177742;177743;177744;177745 177736 32 NGKGEVDDIDHLGNRR Unmodified 1793.8769 0.87687176 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 3 4 3 1 1 3 7 6 6 1 3 1 9 7 9 2 2 1 6 7 7 12.88 13.269 2;3;4;5 9.8502E-49 3085 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 349.06 339.95 30925000000 7629900 10398000 10110000 25042000 30471000 22211000 7314200 4054000 14953000 3403300000 2435600000 2633600000 4905100 13450000 4267200 4826600000 4593300000 4688500000 16256000 13315000 9113600 3163800000 2409400000 2577100000 15405 463 14909 289488;289489;289490;289491;289492;289493;289494;289495;289496;289497;289498;289499;289500;289501;289502;289503;289504;289505;289506;289507;289508;289509;289510;289511;289512;289513;289514;289515;289516;289517;289518;289519;289520;289521;289522;289523;289524;289525;289526;289527;289528;289529;289530;289531;289532;289533;289534;289535;289536;289537;289538;289539;289540;289541;289542;289543;289544;289545;289546;289547;289548;289549;289550;289551;289552;289553;289554;289555;289556;289557;289558;289559;289560;289561;289562;289563;289564;289565;289566;289567;289568;289569;289570;289571;289572;289573;289574;289575;289576;289577;289578;289579;289580 177746;177747;177748;177749;177750;177751;177752;177753;177754;177755;177756;177757;177758;177759;177760;177761;177762;177763;177764;177765;177766;177767;177768;177769;177770;177771;177772;177773;177774;177775;177776;177777;177778;177779;177780;177781;177782;177783;177784;177785;177786;177787;177788;177789;177790;177791;177792;177793;177794;177795 177750 48 NGLACITPISALNQPGKK Unmodified 1881.0142 0.014216861 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 33.157 31.45 2;3 5.1177E-17 11856 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 165.7 152.27 475730000 21758000 19287000 16400000 30576000 26651000 34638000 6622000 7398400 8708700 20183000 22151000 23051000 13623000 12961000 9524800 0 0 0 33737000 32768000 30692000 35045000 34161000 35796000 15406 150 14910 289581;289582;289583;289584;289585;289586;289587;289588;289589;289590;289591;289592;289593;289594;289595;289596;289597;289598;289599;289600;289601;289602;289603;289604;289605;289606;289607;289608;289609;289610;289611;289612;289613;289614;289615 177796;177797;177798;177799;177800;177801;177802;177803;177804;177805;177806;177807 177801 12 NGLDLILSGDTGSSTISLLK Unmodified 2003.0787 0.078650837 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 2 2 2 2 1 2 2 2 54.559 53.425 2;3 5.4646E-46 21243 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 194.19 194.19 7792000000 10550000 0 2017600 0 0 0 8519400 7712900 2719600 330060000 337370000 396690000 11100000 0 0 1547800000 1686900000 2101500000 0 14427000 6215700 436710000 414560000 477110000 15407 1616 14911 289616;289617;289618;289619;289620;289621;289622;289623;289624;289625;289626;289627;289628;289629;289630;289631;289632;289633;289634;289635;289636;289637;289638;289639;289640;289641;289642;289643 177808;177809;177810;177811;177812;177813;177814;177815;177816;177817;177818;177819;177820;177821;177822;177823;177824;177825 177825 18 NGLDVVR Unmodified 771.4239 0.42390173 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 17.252 17.738 2 0.12062 4733 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 50.127 27.504 25360000 0 0 0 2600400 1716000 2459600 4636400 4565100 0 0 0 0 0 0 0 0 0 0 0 0 0 3452600 2787000 3143200 15408 1417 14912 289644;289645;289646;289647;289648;289649;289650;289651 177826 177826 1 NGLGFWR Unmodified 848.42932 0.42932146 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 34.011 32.772 2 0.0010644 15457 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.5 130.48 73372000 24328000 25495000 23548000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15409 1173 14913 289652;289653;289654 177827;177828;177829 177829 3 NGLHSVCEEASCPNLAECFNHGTATFMILGAICTR Unmodified 3936.7474 0.74740255 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 50.33 48.951 4 7.8532E-11 17552 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 100.33 100.29 48836000 0 0 0 6429600 7351700 9692400 0 0 0 0 0 0 0 0 0 0 0 0 4212400 0 0 8679300 7473700 4997200 15410 1628 14914 289655;289656;289657;289658;289659;289660;289661 177830;177831;177832;177833 177833 4 NGLHVRPASR Unmodified 1105.6105 0.61047372 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.674 11.235 3 0.021717 2236 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 51.762 48.623 158230000 6019000 5728100 3950700 0 1870500 0 13823000 14684000 13048000 6309900 6401700 5767800 7777600 11389000 8445900 1775500 3533500 2708600 12892000 13502000 12405000 0 2980100 3220100 15411 1468 14915 289662;289663;289664;289665;289666;289667;289668;289669;289670;289671;289672;289673;289674;289675;289676;289677;289678;289679;289680;289681;289682 177834;177835;177836 177834 3 NGLLLAR Unmodified 755.46537 0.46537261 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.25 22.492 2 0.0010644 9383 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.5 37.994 577860000 88432000 97802000 76144000 3822900 5877100 4738200 54168000 45026000 44845000 4547600 2845900 3693000 24832000 23548000 0 1893500 0 0 30892000 36967000 27786000 0 0 0 15412 546 14916 289683;289684;289685;289686;289687;289688;289689;289690;289691;289692;289693;289694;289695;289696;289697;289698;289699;289700 177837;177838;177839;177840;177841;177842;177843;177844;177845;177846;177847;177848;177849 177848 11 NGLPSETYITCAEANEMAK Unmodified 2097.9347 0.93470549 628 P0AB46 ymgD Uncharacterized protein YmgD yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 36.724 35.034 2 1.459E-09 16149 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 118.13 112.29 54985000 0 0 0 0 0 0 5195100 5647600 5613300 0 0 0 8905900 8332600 8084200 0 0 0 5602200 4183400 3421000 0 0 0 15413 628 14917 289701;289702;289703;289704;289705;289706;289707;289708;289709 177850;177851 177851 2 NGLRPAR Unmodified 782.45112 0.45111953 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 9.9409 10.584 2 0.069949 2348 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 64.776 55.027 100030000 23439000 24099000 12109000 0 0 0 0 0 0 9274400 8970500 7911700 2161600 1599400 0 0 0 0 3042100 3741800 3678100 0 0 0 15414 218 14918 289710;289711;289712;289713;289714;289715;289716;289717;289718;289719;289720 177852;177853;177854;177855 177855 4 NGLVTWETQQTDYPR Unmodified 1806.8537 0.8536767 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.445 33.897 2 1.0214E-35 16143 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 261.72 252.72 185930000 5654800 5472000 5940400 2252600 0 1983800 14688000 9496300 10031000 7596500 6892100 7519700 8751400 9177900 7519700 2321700 1672200 1605800 15963000 14108000 18734000 10305000 7877200 10369000 15415 205 14919 289721;289722;289723;289724;289725;289726;289727;289728;289729;289730;289731;289732;289733;289734;289735;289736;289737;289738;289739;289740;289741;289742;289743 177856;177857;177858;177859;177860;177861;177862;177863;177864;177865;177866;177867;177868;177869;177870;177871;177872 177867 17 NGLWHALTPQFFPR Unmodified 1682.8681 0.86814497 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 45.469 43.988 3 0.040154 17387 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 41.476 35.394 62082000 3331500 0 5686900 0 0 0 0 7450300 0 0 0 0 5363600 5946300 4051700 0 0 0 9394300 0 7056800 5629400 8171500 0 15416 1964 14920 289744;289745;289746;289747;289748;289749;289750;289751;289752;289753 177873 177873 0 NGMECGIGVK Unmodified 1063.4791 0.47905012 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.903 17.671 2 0.00015969 6355 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 124.98 115.59 305610000 48258000 47421000 45589000 0 0 2028100 18181000 20611000 16193000 0 0 0 15594000 14890000 15293000 0 0 0 20029000 21539000 19987000 0 0 0 15417 297 14921 289754;289755;289756;289757;289758;289759;289760;289761;289762;289763;289764;289765;289766;289767;289768;289769 177874;177875;177876;177877;177878;177879;177880;177881;177882;177883;177884;177885 177881 11 NGMFEAIINHESEQIRPLDNAYTDILNK Unmodified 3244.5823 0.58227623 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 50.971 49.726 3;4 3.953E-11 17987 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 124.45 124.19 85148000 0 7536400 0 25564000 26672000 25376000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15418 114 14922 289770;289771;289772;289773;289774;289775;289776 177886;177887;177888;177889;177890;177891 177888 6 NGNEAVLIGQLECK Unmodified 1543.7664 0.7664416 737 P0ACN4 allR HTH-type transcriptional repressor AllR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.618 33.394 2 0.00021302 15813 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.718 75.759 53620000 13762000 8469900 8038000 0 0 0 2304400 0 2270800 0 0 0 0 0 1094800 4527400 3294100 4486100 0 0 0 1742000 1790900 1839500 15419 737 14923 289777;289778;289779;289780;289781;289782;289783;289784;289785;289786;289787;289788 177892;177893;177894;177895 177894 1 NGNIDLTDLR Unmodified 1129.5728 0.57275081 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.765 29.266 2 4.6626E-07 13138 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 173.48 148.55 1135500000 83377000 74219000 71133000 4978400 4689700 0 128450000 116510000 101480000 0 0 4605000 71050000 77474000 66645000 0 0 0 99638000 106910000 111590000 3986500 4051200 4710800 15420 1409 14924 289789;289790;289791;289792;289793;289794;289795;289796;289797;289798;289799;289800;289801;289802;289803;289804;289805;289806 177896;177897;177898;177899;177900;177901;177902;177903 177902 7 NGNLATASTEK Unmodified 1104.5411 0.54111633 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 11.177 11.931 2 0.00068411 3053 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.18 73.973 48160000 0 0 0 0 0 0 18826000 13966000 15368000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15421 722 14925 289807;289808;289809 177904 177904 1 NGNNLAAQVEFETFNR Unmodified 1822.8598 0.85982471 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 1 1 1 5 4 3 1 1 2 3 3 40.584 39.236 2;3 3.864E-75 15814 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 333.63 310.72 3379900000 4398400 0 0 0 0 0 0 0 0 342460000 288690000 304010000 5187700 3939400 3210300 602280000 447500000 520940000 7180500 4581500 0 270050000 292260000 283240000 15422 1616 14926 289810;289811;289812;289813;289814;289815;289816;289817;289818;289819;289820;289821;289822;289823;289824;289825;289826;289827;289828;289829;289830;289831;289832;289833;289834;289835;289836;289837;289838;289839;289840;289841;289842;289843 177905;177906;177907;177908;177909;177910;177911;177912;177913;177914;177915;177916;177917;177918;177919;177920;177921;177922;177923;177924;177925;177926;177927;177928;177929;177930;177931;177932;177933;177934;177935;177936;177937;177938;177939;177940;177941;177942;177943;177944;177945;177946;177947;177948;177949;177950 177921 44 NGNPSGEGFTSGVTNNGR Unmodified 1763.7823 0.78230267 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 18.031 18.353 2;3 2.2698E-22 5618 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 255.24 254.45 159070000 0 0 0 12284000 10511000 11716000 2421100 2540400 0 24770000 24270000 24818000 0 2322900 0 4535100 0 3412000 3328300 4457700 4190400 8465700 6649500 8375200 15423 144 14927 289844;289845;289846;289847;289848;289849;289850;289851;289852;289853;289854;289855;289856;289857;289858;289859;289860;289861;289862;289863;289864;289865;289866;289867 177951;177952;177953;177954;177955;177956;177957;177958;177959;177960;177961;177962;177963;177964;177965 177954 15 NGNVVDYQTGPIIWGEPGTNGQHAFYQLIHQGTK Unmodified 3738.8179 0.8179069 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 47.245 45.916 4 6.7983E-19 22278 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 148.02 146.53 154270000 27043000 0 18037000 0 0 0 0 34261000 0 0 0 0 9690200 11635000 6896500 0 0 0 17744000 13990000 14974000 0 0 0 15424 277 14928 289868;289869;289870;289871;289872;289873;289874;289875;289876 177966;177967;177968 177968 3 NGPQLADLVK Unmodified 1053.5819 0.58185893 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 2 2 2 3 3 1 1 1 2 2 2 1 2 1 24.65 24.134 2;3 0.00068127 14337 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 104.2 93.786 3248100000 257640000 237230000 222720000 5386600 0 2339200 254530000 252190000 255680000 9365600 9893800 9523000 231900000 255000000 255980000 3931400 3414000 4265500 332880000 317120000 312940000 4009400 6365100 3747300 15425 92 14929 289877;289878;289879;289880;289881;289882;289883;289884;289885;289886;289887;289888;289889;289890;289891;289892;289893;289894;289895;289896;289897;289898;289899;289900;289901;289902;289903;289904;289905;289906;289907;289908;289909;289910;289911;289912;289913;289914;289915;289916;289917;289918 177969;177970;177971;177972;177973;177974;177975;177976;177977;177978;177979;177980;177981;177982;177983 177969 15 NGPTLLAIPLLR Unmodified 1276.7867 0.78670675 1712 P67601 yobD UPF0266 membrane protein YobD yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.353 51.902 2 0.00094237 25906 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 73.985 72.485 28611000 0 0 0 0 0 0 3488600 3317600 2849700 0 0 0 3144900 3180800 3083700 0 0 0 3274200 3007800 3263500 0 0 0 15426 1712 14930 289919;289920;289921;289922;289923;289924;289925;289926;289927 177984;177985 177984 0 NGQAVGTNTIGSSEACMLGGMAMK Unmodified 2384.0593 0.059270852 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 40.841 39.073 2;3 3.7602E-84 19364 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 312.49 312.49 2828000000 368640000 321320000 317780000 0 0 0 553690000 567450000 525530000 2439700 3250700 2898900 27521000 25764000 31659000 0 0 0 27161000 25845000 27061000 0 0 0 15427 1755;1756 14931 289928;289929;289930;289931;289932;289933;289934;289935;289936;289937;289938;289939;289940;289941;289942;289943;289944;289945;289946;289947;289948;289949;289950;289951;289952;289953;289954;289955 177986;177987;177988;177989;177990;177991;177992;177993;177994;177995;177996;177997;177998;177999;178000;178001;178002 177990 17 NGSDYSAAVLAACLR Unmodified 1566.746 0.7460405 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.734 38.085 2 1.4506E-08 18597 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.73 136.88 138970000 22906000 21797000 20802000 890200 1431700 735760 5012300 0 5231600 0 0 0 6934200 6005900 5181700 0 0 0 16420000 15140000 10482000 0 0 0 15428 34 14932 289956;289957;289958;289959;289960;289961;289962;289963;289964;289965;289966;289967;289968;289969 178003;178004;178005;178006;178007 178006 1 NGSFLFPGGYIENADLSSYRPITSHSDEYLIK Unmodified 3589.7365 0.73652826 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 50.046 48.732 3;4 6.2452E-11 19310 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 110.4 105.45 1370100000 0 5878100 4449800 0 0 0 101770000 102900000 96426000 42983000 43509000 50077000 124000000 91352000 113780000 10133000 9239700 9109500 154820000 145720000 157130000 38007000 35132000 33663000 15429 723 14933 289970;289971;289972;289973;289974;289975;289976;289977;289978;289979;289980;289981;289982;289983;289984;289985;289986;289987;289988;289989;289990;289991;289992;289993;289994;289995;289996;289997;289998;289999;290000;290001;290002;290003 178008;178009;178010;178011;178012;178013;178014;178015;178016;178017;178018;178019;178020;178021;178022;178023;178024;178025;178026;178027;178028 178021 21 NGSTAIAGIMAESFLR Unmodified 1636.8243 0.82429083 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 52.129 50.881 2 3.1377E-08 24684 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.39 104.82 121650000 24977000 21096000 18470000 0 0 0 7049600 7519900 0 0 0 0 5779800 8513800 0 0 0 0 8134000 10141000 9968200 0 0 0 15430 44 14934 290004;290005;290006;290007;290008;290009;290010;290011;290012;290013 178029;178030;178031 178031 3 NGTAISLEEKPLEPK Unmodified 1624.8672 0.8672015 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 23.497 22.797 2;3 9.4405E-15 9824 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 188.26 180.86 729380000 37349000 33074000 41074000 0 0 0 55639000 67459000 66856000 0 0 0 61331000 49300000 47053000 0 0 0 89239000 94841000 86161000 0 0 0 15431 1489 14935 290014;290015;290016;290017;290018;290019;290020;290021;290022;290023;290024;290025;290026;290027;290028;290029;290030;290031;290032;290033;290034;290035;290036 178032;178033;178034;178035;178036;178037;178038;178039;178040;178041;178042;178043;178044;178045;178046 178038 14 NGTDGSLATAINAMR Unmodified 1490.7147 0.71474038 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 36.266 34.584 2 0.0003019 16943 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 75.045 59.779 37990000 2913500 5077800 0 0 0 0 8192900 7248200 6127400 0 0 0 0 0 0 0 0 0 4427900 4002400 0 0 0 0 15432 45 14936 290037;290038;290039;290040;290041;290042;290043 178047 178047 1 NGTDGTIK Unmodified 804.39775 0.39774656 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.344 11.118 2 0.013568 2360 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.26 48.628 1333900000 50800000 48919000 36767000 0 0 0 273110000 236460000 210810000 0 0 0 0 0 0 0 0 0 160890000 168470000 147630000 0 0 0 15433 639 14937 290044;290045;290046;290047;290048;290049;290050;290051;290052 178048 178048 1 NGTFVTTYLSPR Unmodified 1354.6881 0.68811492 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.383 34.583 2 4.9223E-06 13669 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 133.81 121.28 73433000 0 2598000 2116600 1625400 1844600 1872400 3686300 3233000 3332200 5590600 4797200 5573200 4232200 3526200 3999300 0 0 0 5895300 5159900 5719600 2735900 3385800 2509400 15434 439 14938 290053;290054;290055;290056;290057;290058;290059;290060;290061;290062;290063;290064;290065;290066;290067;290068;290069;290070;290071;290072 178049;178050;178051;178052;178053;178054;178055 178049 7 NGTLPWLRPDAK Unmodified 1366.7357 0.73573382 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 1 2 2 2 2 2 2 2 1 1 30.254 28.698 2;3 2.0799E-05 13875 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.51 122.73 848930000 65903000 76272000 58058000 3847400 3805000 3184100 93272000 92724000 85394000 16466000 11313000 12056000 39190000 35491000 39770000 0 0 0 65993000 69774000 73555000 1836000 1022800 0 15435 388 14939 290073;290074;290075;290076;290077;290078;290079;290080;290081;290082;290083;290084;290085;290086;290087;290088;290089;290090;290091;290092;290093;290094;290095;290096;290097;290098;290099;290100;290101;290102;290103;290104;290105;290106 178056;178057;178058;178059;178060;178061 178058 5 NGVAQPLR Unmodified 853.477 0.47699993 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.262 13.781 2 0.00029417 3851 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 124.89 120.87 523950000 13327000 9349100 12996000 0 1125900 0 49938000 41930000 47856000 45408000 39192000 37648000 26274000 0 0 19645000 14085000 13860000 44921000 39708000 39099000 10376000 9665800 7548000 15436 30 14940 290107;290108;290109;290110;290111;290112;290113;290114;290115;290116;290117;290118;290119;290120;290121;290122;290123;290124;290125;290126;290127;290128 178062;178063;178064;178065;178066;178067;178068;178069;178070;178071;178072;178073;178074;178075;178076;178077 178077 16 NGVFTDR Unmodified 807.38752 0.38751622 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 14.31 14.918 2 0.0022589 4904 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 115.46 104.48 601500000 55464000 59493000 54126000 917170 928520 870820 60432000 72276000 64353000 7007200 5616800 6393200 57801000 23900000 22078000 12046000 10103000 10907000 26346000 27080000 21829000 0 0 1533400 15437 1086 14941 290129;290130;290131;290132;290133;290134;290135;290136;290137;290138;290139;290140;290141;290142;290143;290144;290145;290146;290147;290148;290149;290150;290151;290152 178078;178079;178080;178081;178082;178083;178084;178085;178086;178087 178085 10 NGVIGGIMLGLGR Unmodified 1255.7071 0.70707622 1020 P0AGH8 pstC Phosphate transport system permease protein PstC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.767 46.548 2 2.7994E-05 18438 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 105.4 65.395 109360000 0 0 0 0 0 0 7510400 0 9105300 5443100 4632800 8014500 10432000 11061000 10619000 2913600 2400200 3925700 0 0 16142000 6845400 4185100 6130600 15438 1020 14942 290153;290154;290155;290156;290157;290158;290159;290160;290161;290162;290163;290164;290165;290166;290167 178088;178089;178090;178091;178092;178093;178094 178091 7 NGVIVVGHR Unmodified 949.54575 0.5457482 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 12.742 13.522 2 0.014693 4002 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 67.032 52.256 290110000 76235000 76531000 86881000 0 0 0 0 14933000 0 0 0 0 0 0 0 0 0 0 12238000 11724000 11567000 0 0 0 15439 1501 14943 290168;290169;290170;290171;290172;290173;290174 178095;178096;178097;178098 178096 0 NGVMIVNTSR Unmodified 1089.5601 0.56007764 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.308 20.705 2 2.8738E-07 7670 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 177.36 148.05 383430000 28122000 30283000 28551000 0 0 0 40612000 39963000 39246000 0 0 0 31170000 31478000 28886000 0 0 0 29573000 29592000 25956000 0 0 0 15440 1608 14944 290175;290176;290177;290178;290179;290180;290181;290182;290183;290184;290185;290186 178099;178100;178101;178102 178102 3 NGVNLFAGDK Unmodified 1033.5193 0.51925868 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.629 25.515 2 0.00051522 11415 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.044 94.472 982440000 52362000 46967000 46175000 0 0 5103000 134410000 133480000 130570000 9700300 7508300 11084000 55160000 56324000 48391000 618180 0 605830 87485000 76422000 78586000 0 0 1490100 15441 508 14945 290187;290188;290189;290190;290191;290192;290193;290194;290195;290196;290197;290198;290199;290200;290201;290202;290203;290204;290205 178103;178104;178105;178106;178107;178108;178109;178110 178106 8 NGVVNEIWTR Unmodified 1186.6095 0.60947067 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 32.089 30.713 2 0.0041528 13837 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 76.827 60.945 146970000 0 4457500 0 0 0 0 24503000 27447000 22715000 0 0 0 15415000 11735000 11794000 0 0 0 7341500 11592000 9969000 0 0 0 15442 1087 14946 290206;290207;290208;290209;290210;290211;290212;290213;290214;290215 178111;178112;178113;178114 178113 0 NGYEGAR Unmodified 765.34057 0.34056603 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 1 1 1 1 7.9841 8.8934 2 0.062312 1072 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 60.788 50.482 26338000 0 0 0 1338700 1694900 1353300 5557500 3853800 3246300 0 0 0 0 0 0 0 0 0 4807200 4486800 0 0 0 0 15443 1383 14947 290216;290217;290218;290219;290220;290221;290222;290223;290224 178115;178116 178116 1 NGYQDSLFTSPEVAR Unmodified 1682.79 0.79001381 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 36.185 34.633 2;3 1.6154E-16 16716 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 202.65 200.14 245290000 74730000 69149000 59457000 0 0 0 8544600 10460000 8466600 0 0 0 3514000 4099600 3042400 0 0 0 0 0 3831500 0 0 0 15444 1160 14948 290225;290226;290227;290228;290229;290230;290231;290232;290233;290234;290235 178117;178118;178119;178120;178121;178122;178123;178124 178119 5 NGYWGHPQYK Unmodified 1248.5676 0.56760585 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 15.082 15.548 2 0.00059012 5268 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 93.162 82.333 12996000 0 0 0 0 0 0 4295300 3983200 3969500 747830 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15445 722 14949 290236;290237;290238;290239 178125;178126 178125 2 NHADIPLRPR Unmodified 1187.6523 0.65233854 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 2 2 2 2 2 1 1 1 12.391 13.251 2;3 7.7185E-05 3620 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 138.4 122.26 747300000 0 6261900 7232100 0 0 0 150160000 133360000 159330000 0 0 0 83928000 93596000 89310000 0 0 0 9260500 8117100 6738200 0 0 0 15446 1087 14950 290240;290241;290242;290243;290244;290245;290246;290247;290248;290249;290250;290251;290252;290253;290254;290255;290256 178127;178128;178129;178130;178131;178132 178132 4 NHAVTEEIK Unmodified 1039.5298 0.52982336 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.177 12.01 2 5.76E-06 3065 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.59 132.49 388300000 54801000 45678000 35035000 0 0 0 48900000 42183000 42268000 0 0 0 18337000 20236000 15087000 0 0 0 24558000 19705000 21510000 0 0 0 15447 1282 14951 290257;290258;290259;290260;290261;290262;290263;290264;290265;290266;290267;290268 178133;178134;178135;178136 178135 4 NHCEILQGNAR Unmodified 1310.615 0.61496675 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 12.136 12.84 2;3 3.4829E-16 3606 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 225.66 220.3 624550000 69982000 89049000 151180000 6596200 5861900 2813600 26519000 15282000 21886000 3278700 2639300 2679500 19357000 14971000 19977000 936020 5500600 0 61474000 37437000 59631000 5636200 0 1855500 15448 1302 14952 290269;290270;290271;290272;290273;290274;290275;290276;290277;290278;290279;290280;290281;290282;290283;290284;290285;290286;290287;290288;290289;290290;290291;290292;290293;290294;290295;290296 178137;178138;178139;178140;178141;178142;178143;178144;178145 178143 7 NHDIADVVDK Unmodified 1124.5462 0.54620171 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 15.654 16.394 2 1.0264E-08 5671 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.28 174.72 178310000 58127000 50430000 46051000 0 0 0 4401900 3406300 3209400 0 0 0 0 0 0 0 0 0 4515700 4329300 3842100 0 0 0 15449 49 14953 290297;290298;290299;290300;290301;290302;290303;290304;290305 178146;178147;178148;178149;178150;178151 178149 6 NHDTGVSPVFAGGVEYAITPEIATR Unmodified 2600.2871 0.28708048 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1 2 1 1 2 2 2 1 1 2 1 1 1 1 2 1 1 1 2 45.751 44.217 2;3 3.8939E-60 18037 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 316.14 299.48 1751400000 37215000 29224000 28249000 62764000 50069000 46080000 41977000 37391000 35302000 177230000 190790000 171730000 59092000 65667000 68039000 29801000 23067000 40916000 74606000 68634000 60312000 117890000 119340000 116050000 15450 480 14954 290306;290307;290308;290309;290310;290311;290312;290313;290314;290315;290316;290317;290318;290319;290320;290321;290322;290323;290324;290325;290326;290327;290328;290329;290330;290331;290332;290333;290334;290335;290336;290337 178152;178153;178154;178155;178156;178157;178158;178159;178160;178161;178162;178163 178152 12 NHEAGGIYLFTDEK Unmodified 1592.7471 0.74708636 755 P0ACX3 ydhR Putative monooxygenase YdhR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 1 2 1 30.184 28.815 2;3 8.0703E-45 13484 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 273.15 269.66 190050000 38544000 35286000 28085000 0 0 0 14171000 11974000 11901000 0 0 0 11715000 11450000 8438100 0 0 0 6245500 8602600 3639400 0 0 0 15451 755 14955 290338;290339;290340;290341;290342;290343;290344;290345;290346;290347;290348;290349;290350;290351;290352;290353;290354;290355;290356;290357;290358 178164;178165;178166;178167;178168;178169;178170;178171;178172;178173;178174;178175;178176;178177;178178;178179 178170 15 NHEEEMK Unmodified 915.37563 0.37563091 13;4 CON__P13645;CON__Q7Z3Y7;CON__Q7Z3Y8;CON__Q2M2I5;CON__ENSEMBL:ENSP00000377550;CON__P13646-1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 8.1361 8.6674 2 0.00099753 1777 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 139.28 122.35 63629000 0 0 0 3363900 3669800 3120500 0 0 0 0 0 5066500 0 0 0 0 0 2374500 0 0 0 13504000 14684000 17845000 + 15452 13;4 14956 290359;290360;290361;290362;290363;290364;290365;290366 178180;178181;178182;178183;178184;178185 178180 6 NHEEEMKDLR Unmodified 1299.5877 0.58774895 13 CON__P13645 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 11.534 11.946 2;3 4.157E-23 2508 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 259.82 254.85 489250000 0 0 0 27511000 31343000 31586000 0 0 0 30767000 37890000 30712000 0 0 0 24001000 25020000 26439000 0 0 0 70647000 83108000 70228000 + 15453 13 14957 290367;290368;290369;290370;290371;290372;290373;290374;290375;290376;290377;290378;290379;290380;290381;290382;290383;290384;290385;290386;290387;290388 178186;178187;178188;178189;178190;178191;178192;178193;178194 178187 9 NHEEEMNALR Unmodified 1241.5459 0.54588413 6 CON__P02533;CON__Q04695;CON__Q9QWL7;CON__Q6IFX2 yes no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 12.839 13.318 2 7.1202E-09 3280 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 188.66 183.67 31463000 0 0 0 902780 0 713580 0 0 0 8541300 9702200 8606500 0 0 0 0 0 0 0 0 0 0 0 2997100 + 15454 6 14958 290389;290390;290391;290392;290393;290394;290395;290396 178195;178196;178197;178198;178199 178196 5 NHEIIGDIVPLAK Unmodified 1417.7929 0.79291434 1627 P60664 hisF Imidazole glycerol phosphate synthase subunit HisF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.454 33.897 2;3 1.2821E-09 15671 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 212.82 173.19 376160000 46793000 48199000 39227000 0 0 0 31376000 30711000 27456000 0 0 0 22189000 21850000 22068000 0 0 0 31282000 26800000 28205000 0 0 0 15455 1627 14959 290397;290398;290399;290400;290401;290402;290403;290404;290405;290406;290407;290408;290409;290410;290411;290412;290413;290414;290415;290416;290417;290418;290419;290420 178200;178201;178202;178203;178204;178205;178206;178207;178208;178209;178210;178211;178212;178213;178214;178215;178216;178217;178218;178219;178220;178221 178217 18 NHETGELLATFELK Unmodified 1600.8097 0.80968662 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 1 2 2 2 2 2 3 1 3 3 2 1 38.976 37.367 2;3 8.2411E-35 17899 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 297.18 292.24 2739900000 353240000 249040000 248010000 3280900 3274500 3528500 137340000 106960000 111340000 0 0 0 158690000 138570000 169700000 0 605280 0 393710000 342160000 320490000 0 0 0 15456 1444 14960 290421;290422;290423;290424;290425;290426;290427;290428;290429;290430;290431;290432;290433;290434;290435;290436;290437;290438;290439;290440;290441;290442;290443;290444;290445;290446;290447;290448;290449;290450;290451;290452;290453;290454;290455;290456 178222;178223;178224;178225;178226;178227;178228;178229;178230;178231;178232;178233;178234;178235;178236;178237;178238;178239;178240;178241;178242;178243;178244;178245;178246;178247;178248;178249;178250;178251;178252;178253;178254;178255;178256;178257;178258;178259;178260;178261 178252 36 NHFASEYIYNAYK Unmodified 1618.7416 0.74160705 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 1 26.76 25.56 2;3 8.5436E-75 11888 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 346.92 337.23 1487100000 154500000 146690000 134960000 0 1493700 0 213270000 209320000 212370000 2575800 0 0 66578000 68324000 64228000 0 0 0 69057000 71736000 62079000 5941000 0 3944900 15457 548 14961 290457;290458;290459;290460;290461;290462;290463;290464;290465;290466;290467;290468;290469;290470;290471;290472;290473;290474;290475;290476;290477;290478;290479;290480;290481;290482;290483;290484;290485 178262;178263;178264;178265;178266;178267;178268;178269;178270;178271;178272;178273;178274;178275;178276;178277;178278;178279;178280;178281;178282;178283;178284;178285 178263 24 NHFASEYIYNAYKDEK Unmodified 1990.9061 0.9061062 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 3 3 3 3 3 4 3 3 3 4 3 3 1 1 1 3 3 3 3 3 3 24.674 23.658 2;3;4 1.4663E-23 10590 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 236.92 236.21 5746900000 520660000 473270000 389950000 128780000 149220000 157800000 677980000 629670000 511930000 149050000 144210000 158300000 204150000 162430000 171490000 9259800 7162600 7317300 211130000 227380000 212630000 150340000 161780000 131030000 15458 548 14962 290486;290487;290488;290489;290490;290491;290492;290493;290494;290495;290496;290497;290498;290499;290500;290501;290502;290503;290504;290505;290506;290507;290508;290509;290510;290511;290512;290513;290514;290515;290516;290517;290518;290519;290520;290521;290522;290523;290524;290525;290526;290527;290528;290529;290530;290531;290532;290533;290534;290535;290536;290537;290538;290539;290540;290541;290542;290543;290544;290545;290546;290547;290548;290549;290550;290551;290552;290553;290554 178286;178287;178288;178289;178290;178291;178292;178293;178294;178295;178296;178297;178298;178299;178300;178301;178302;178303;178304;178305;178306;178307;178308;178309;178310;178311;178312;178313;178314;178315;178316;178317;178318;178319;178320;178321;178322;178323;178324;178325;178326;178327 178298 42 NHFVTILGTIQGEQPGFINK Unmodified 2212.1641 0.16405222 1462 P37194 slp Outer membrane protein slp yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 2 1 1 44.387 42.576 2;3 1.2284E-14 17102 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 142.72 139.53 364630000 25260000 29692000 28388000 5346500 5093800 0 45671000 35312000 33278000 54409000 50998000 44861000 6320200 0 0 0 0 0 0 0 0 0 0 0 15459 1462 14963 290555;290556;290557;290558;290559;290560;290561;290562;290563;290564;290565;290566;290567 178328;178329;178330;178331;178332;178333;178334;178335 178329 8 NHGFQFQLGSVIDIDR Unmodified 1844.9169 0.91694566 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 1 2 1 1 1 1 1 1 1 1 46.612 44.821 3 1.9419E-10 17835 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 106.3 104.18 231760000 0 0 0 0 0 0 43643000 38006000 39481000 15711000 10360000 12652000 7809300 9185800 9193200 0 0 0 12006000 16474000 11474000 2162700 0 3606700 15460 27 14964 290568;290569;290570;290571;290572;290573;290574;290575;290576;290577;290578;290579;290580;290581;290582;290583;290584;290585;290586 178336;178337;178338;178339;178340;178341;178342;178343;178344;178345;178346;178347 178337 11 NHGGEFVLR Unmodified 1027.5199 0.51992738 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 15.228 16.055 2 1.1418E-07 5488 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.87 167.2 2424300000 206400000 184800000 139070000 0 0 0 0 213170000 234980000 0 0 0 229370000 205550000 191090000 0 0 0 263890000 277380000 278640000 0 0 0 15461 92 14965 290587;290588;290589;290590;290591;290592;290593;290594;290595;290596;290597 178348;178349;178350;178351;178352;178353;178354;178355;178356 178352 9 NHGHIINIGSTAGSWPYAGGNVYGATK Unmodified 2741.331 0.33101098 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 1 33.362 31.891 3;4 2.7312E-23 14973 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 177.18 176.43 3264800000 297780000 260290000 254400000 0 0 0 355680000 353570000 355590000 0 0 0 165310000 204130000 177860000 0 0 0 249200000 283130000 305420000 0 1541600 944080 15462 1545 14966 290598;290599;290600;290601;290602;290603;290604;290605;290606;290607;290608;290609;290610;290611;290612;290613;290614;290615;290616;290617;290618;290619;290620;290621;290622;290623 178357;178358;178359;178360;178361;178362;178363;178364;178365;178366;178367;178368;178369;178370;178371;178372;178373;178374;178375;178376;178377;178378;178379;178380 178368 24 NHGLLHSGAR Unmodified 1060.5526 0.55262449 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 2 1 1 2 2 2 2 2 2 10.198 10.969 2;3 4.4209E-05 2343 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 113.93 95.151 823750000 6392000 7078100 5458500 0 0 0 43331000 77582000 50274000 6774200 9584800 0 143390000 102730000 107150000 0 0 0 87959000 93384000 82661000 0 0 0 15463 506 14967 290624;290625;290626;290627;290628;290629;290630;290631;290632;290633;290634;290635;290636;290637;290638;290639;290640;290641;290642;290643;290644;290645;290646 178381;178382;178383;178384;178385;178386;178387;178388;178389;178390;178391;178392;178393 178392 12 NHGLSPR Unmodified 779.40383 0.40383499 1766 P75736 ybfF Esterase YbfF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 10.133 10.97 2 0.025794 2494 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 71.296 67.443 217550000 45666000 40695000 43189000 0 0 0 0 0 0 0 0 0 5362500 5188500 2890800 0 0 0 26012000 21426000 27120000 0 0 0 15464 1766 14968 290647;290648;290649;290650;290651;290652;290653;290654;290655 178394 178394 1 NHGYTVLDIQQDGPTIR Unmodified 1925.9595 0.95953875 572 P0AA31 yedF UPF0033 protein YedF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 32.606 31.227 2;3 5.6757E-40 15089 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 320.57 315.26 1421500000 85939000 77396000 71137000 3153000 2539600 3688500 114250000 108030000 114000000 6633300 8523500 5815000 127730000 135220000 130770000 3382100 3441300 5609600 125410000 122510000 155020000 5177800 2567300 3519500 15465 572 14969 290656;290657;290658;290659;290660;290661;290662;290663;290664;290665;290666;290667;290668;290669;290670;290671;290672;290673;290674;290675;290676;290677;290678;290679;290680;290681;290682;290683;290684;290685;290686;290687;290688;290689;290690;290691 178395;178396;178397;178398;178399;178400;178401;178402;178403;178404;178405;178406;178407;178408;178409;178410;178411;178412;178413;178414 178398 20 NHIATLQER Unmodified 1080.5676 0.56760585 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 1 1 1 1 1 11.606 12.456 2 8.7865E-09 3202 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 201.39 156.7 1776000000 184760000 182700000 160620000 253410 380450 0 188920000 173820000 163550000 0 0 0 111280000 92583000 97172000 0 0 0 140380000 147800000 131800000 0 0 0 15466 1170 14970 290692;290693;290694;290695;290696;290697;290698;290699;290700;290701;290702;290703;290704;290705;290706;290707 178415;178416;178417;178418;178419;178420;178421;178422;178423;178424;178425;178426 178424 12 NHIGGNAYTEDCEGIQIHK Unmodified 2154.9753 0.97526517 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 17.732 18.407 3;4 5.1726E-46 6485 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 265.77 264.87 1389700000 38803000 39820000 36576000 0 0 0 130090000 177320000 166540000 0 0 0 106180000 110230000 103080000 0 0 0 173550000 157710000 149840000 0 0 0 15467 1491 14971 290708;290709;290710;290711;290712;290713;290714;290715;290716;290717;290718;290719;290720;290721;290722;290723;290724;290725;290726;290727;290728;290729;290730;290731 178427;178428;178429;178430;178431;178432;178433;178434;178435;178436;178437;178438;178439;178440;178441;178442;178443;178444;178445;178446 178441 20 NHIPAQTLIER Unmodified 1290.7044 0.70443369 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 18.841 19.434 2 6.7443E-05 7341 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.07 118.14 98334000 35172000 31918000 24330000 2149900 2969800 1794400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15468 48 14972 290732;290733;290734;290735;290736;290737 178447;178448;178449;178450 178448 4 NHKEEMSQLTGQNSGDVNVEINVAPGK Unmodified 2894.3828 0.38284814 16 CON__P35527 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 27.614 25.969 3;4 8.7775E-31 9806 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 180.42 179.61 310210000 0 0 0 2248100 0 2079200 0 0 0 89592000 79468000 74816000 0 0 0 0 0 0 0 0 0 15566000 19914000 26522000 + 15469 16 14973 290738;290739;290740;290741;290742;290743;290744;290745;290746;290747;290748;290749;290750;290751;290752 178451;178452;178453;178454;178455;178456;178457;178458;178459;178460;178461 178451 11 NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unmodified 3351.6365 0.63649664 16 CON__P35527 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 2 2 2 28.714 26.759 3;4;5 1.3135E-12 10001 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 117.33 115.32 293020000 0 0 0 0 0 0 0 0 0 62793000 87855000 85433000 0 0 0 0 0 0 0 0 0 20868000 19116000 16951000 + 15470 16 14974 290753;290754;290755;290756;290757;290758;290759;290760;290761;290762;290763;290764;290765;290766;290767 178462;178463;178464;178465;178466;178467;178468;178469;178470 178464 9 NHLDDYVIGQEQAK Unmodified 1628.7794 0.77944912 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 22.377 21.858 2;3 1.7032E-81 9372 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 347.7 347.7 2420500000 183810000 192550000 163340000 3948500 1577100 6939500 211610000 220990000 222430000 17514000 15287000 13290000 166310000 161070000 154650000 5886400 2955500 4487600 211100000 245470000 210890000 0 4416600 0 15471 244 14975 290768;290769;290770;290771;290772;290773;290774;290775;290776;290777;290778;290779;290780;290781;290782;290783;290784;290785;290786;290787;290788;290789;290790;290791;290792;290793;290794;290795;290796;290797;290798;290799;290800;290801;290802;290803;290804;290805;290806;290807;290808 178471;178472;178473;178474;178475;178476;178477;178478;178479;178480;178481;178482;178483;178484;178485;178486;178487;178488;178489;178490;178491 178481 21 NHLNGNGVEIIDISPMGCR Unmodified 2094.9939 0.99389212 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.93 40.272 3 0.0097374 18814 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 55.33 52.433 93506000 8808800 10094000 11697000 0 0 0 8916200 0 9315600 0 0 0 7240400 6788900 7027600 0 0 0 7377900 9736800 6503100 0 0 0 15472 1577 14976 290809;290810;290811;290812;290813;290814;290815;290816;290817;290818;290819 178492;178493;178494;178495 178495 0 NHLNMHFVSNVDGTHIAEVLK Unmodified 2374.1852 0.18519837 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 2 3 3 3 3 3 32.694 31.306 3;4;5 3.0846E-43 15118 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 234.04 227.78 4842300000 396360000 323120000 328570000 1200300 758950 862320 730290000 631770000 651280000 0 0 0 298460000 218200000 238050000 0 0 0 372540000 311530000 339310000 0 0 0 15473 277 14977 290820;290821;290822;290823;290824;290825;290826;290827;290828;290829;290830;290831;290832;290833;290834;290835;290836;290837;290838;290839;290840;290841;290842;290843;290844;290845;290846;290847;290848;290849;290850;290851;290852;290853;290854;290855;290856;290857 178496;178497;178498;178499;178500;178501;178502;178503;178504;178505;178506;178507;178508;178509;178510;178511;178512;178513;178514;178515;178516;178517;178518;178519;178520 178499 24 NHLNMHFVSNVDGTHIAEVLK Oxidation (M) 2390.1801 0.18011299 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 32.53 31.306 4 0.0056439 14098 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 43.823 39.828 45868000 0 0 0 0 0 0 0 0 0 0 0 0 10373000 0 14097000 0 0 0 0 9163500 12235000 0 0 0 15474 277 14977 290858;290859;290860;290861 178521 178521 134 1 NHLNMHFVSNVDGTHIAEVLKK Unmodified 2502.2802 0.28016139 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 2 2 2 2 2 2 2 29.081 27.801 4;5 3.5428E-10 12817 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.37 114.71 1101100000 66666000 80062000 94216000 1225000 0 1029900 160240000 195880000 143440000 0 0 0 44383000 47897000 46853000 0 0 0 76548000 67534000 75161000 0 0 0 15475 277 14978 290862;290863;290864;290865;290866;290867;290868;290869;290870;290871;290872;290873;290874;290875;290876;290877;290878;290879;290880;290881;290882;290883;290884;290885;290886 178522;178523;178524;178525;178526;178527;178528;178529;178530;178531;178532;178533;178534;178535;178536;178537;178538 178531 17 NHLTGETQALHAPVVVNAAGIWGQHIAEYADLR Unmodified 3550.8069 0.80694828 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 2 2 1 2 2 2 2 1 2 46.2 44.659 4;5 1.543E-43 22224 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 208.99 207.46 668380000 9516700 4260300 4108400 0 0 0 110110000 60980000 111910000 0 7945700 5638700 63637000 83314000 63525000 0 0 0 53096000 34457000 55871000 0 0 0 15476 506 14979 290887;290888;290889;290890;290891;290892;290893;290894;290895;290896;290897;290898;290899;290900;290901;290902;290903;290904;290905;290906;290907;290908;290909 178539;178540;178541;178542;178543;178544;178545;178546;178547;178548;178549;178550;178551;178552;178553 178539 15 NHMLVGGVRPHLYCLPILK Unmodified 2216.2075 0.20745414 104 P05020 pyrC Dihydroorotase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.776 33.319 4 1.4034E-07 15833 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.48 105.28 224930000 46595000 42886000 37634000 0 0 0 11585000 8836200 7734500 0 0 0 10873000 7083100 8823100 0 0 0 13791000 14205000 14885000 0 0 0 15477 104 14980 290910;290911;290912;290913;290914;290915;290916;290917;290918;290919;290920;290921 178554;178555 178555 2 NHMSLHDLCSGMK Unmodified 1528.6585 0.65848783 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 1 18.607 19.144 2;3 8.0662E-26 6891 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 248.42 248.42 1699900000 124570000 146200000 102080000 439880 0 851280 151100000 118940000 150410000 0 0 872810 163540000 138790000 113420000 0 0 0 149160000 154630000 184090000 0 0 828770 15478 1360 14981 290922;290923;290924;290925;290926;290927;290928;290929;290930;290931;290932;290933;290934;290935;290936;290937;290938;290939;290940;290941;290942;290943;290944;290945;290946;290947;290948;290949 178556;178557;178558;178559;178560;178561;178562;178563;178564;178565;178566;178567;178568;178569;178570;178571;178572;178573;178574;178575;178576;178577;178578;178579 178575 24 NHNLGDSVNALTLEHYPGMTEK Unmodified 2439.1489 0.14887244 1345 P30749 moaE Molybdopterin synthase catalytic subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.496 31.156 3 4.1206E-28 14644 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.71 182.71 199600000 25821000 28444000 26250000 0 0 0 17831000 13414000 17059000 0 0 0 10697000 12113000 9879000 0 0 0 11130000 12750000 14209000 0 0 0 15479 1345 14982 290950;290951;290952;290953;290954;290955;290956;290957;290958;290959;290960;290961 178580;178581;178582;178583;178584;178585;178586;178587;178588;178589 178586 10 NHPFAGEIR Unmodified 1039.5199 0.51992738 1127 P16687 phnI Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 13.126 14.061 2 0.074012 4327 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 54.157 48.118 31335000 0 0 0 0 0 0 0 0 0 0 0 0 0 3523600 3090700 0 0 0 9627400 7443200 7650600 0 0 0 15480 1127 14983 290962;290963;290964;290965;290966 178590 178590 0 NHPGVMTHVCGLFAR Unmodified 1694.8133 0.81334898 786 P0ADF8 ilvN Acetolactate synthase isozyme 1 small subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 24.682 23.689 2;3 8.1419E-05 10338 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.353 93.653 279920000 7681600 76774000 73098000 1124400 1018400 936290 14024000 16168000 13997000 0 0 0 18949000 0 8392800 0 0 0 23492000 12813000 11455000 0 0 0 15481 786 14984 290967;290968;290969;290970;290971;290972;290973;290974;290975;290976;290977;290978;290979;290980;290981;290982;290983;290984;290985 178591;178592;178593;178594;178595;178596;178597;178598;178599 178596 9 NHSENVSR Unmodified 941.43151 0.4315063 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 4.8533 5.6791 2 1.002E-05 841 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 178.99 157.06 202200000 20065000 20755000 15362000 0 0 0 29979000 27293000 26343000 0 0 0 11387000 10280000 9944700 0 0 0 11083000 10657000 9054500 0 0 0 15482 709 14985 290986;290987;290988;290989;290990;290991;290992;290993;290994;290995;290996;290997;290998;290999;291000 178600;178601;178602;178603;178604;178605;178606 178602 7 NHSHLWKPLLHEVATGSLDEGVDALSYLAHAR Unmodified 3535.796 0.79604925 27 P00393 ndh NADH dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 2 1 1 2 1 1 47.18 45.509 5 0.0010629 18039 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 55.413 53.811 77452000 0 0 0 0 0 0 9584800 16771000 9437400 0 10620000 6256300 0 0 4092600 0 0 0 11598000 0 5982800 0 0 3108900 15483 27 14986 291001;291002;291003;291004;291005;291006;291007;291008;291009;291010;291011;291012 178607;178608;178609;178610 178609 4 NHTIVSNESAEIIR Unmodified 1581.8111 0.8110836 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 2 2 1 1 1 1 1 2 20.116 20.478 2;3 2.2031E-14 7945 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 186.87 180.64 139110000 12175000 12389000 11327000 0 0 0 27136000 24698000 23812000 0 0 0 2593000 3772000 1555600 0 0 0 3887700 2211500 13557000 0 0 0 15484 1557 14987 291013;291014;291015;291016;291017;291018;291019;291020;291021;291022;291023;291024;291025;291026;291027;291028 178611;178612;178613;178614;178615;178616 178615 5 NHTTIFSEWYALDLVK Unmodified 1935.9731 0.97306355 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 1 1 1 1 1 1 2 2 2 51.679 50.342 2;3 1.5219E-30 20032 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 265.03 251.06 1187700000 64588000 0 48895000 38329000 37876000 36645000 0 0 69736000 28902000 23425000 24551000 108570000 89471000 84939000 0 0 0 123580000 93615000 176200000 40817000 51777000 45773000 15485 698 14988 291029;291030;291031;291032;291033;291034;291035;291036;291037;291038;291039;291040;291041;291042;291043;291044;291045;291046;291047;291048;291049;291050;291051;291052;291053;291054;291055 178617;178618;178619;178620;178621;178622;178623;178624;178625;178626;178627;178628;178629;178630;178631;178632;178633;178634;178635;178636;178637;178638;178639;178640 178625 24 NHVNPAWLIGLLQK Unmodified 1601.9042 0.90419613 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.897 47.662 3 4.6239E-06 23233 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.17 106.55 159710000 14848000 12650000 16757000 0 0 0 14519000 7306100 15551000 1003500 0 1029400 9018700 8578700 7347800 0 3003600 4572500 13223000 16233000 11614000 1002300 1450800 0 15486 1355 14989 291056;291057;291058;291059;291060;291061;291062;291063;291064;291065;291066;291067;291068;291069;291070;291071;291072;291073 178641;178642;178643;178644;178645;178646;178647;178648;178649;178650;178651 178645 11 NHVPVLAIAAHIPSSEIGSGYFQETHPQELFR Unmodified 3543.7899 0.78990124 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 45.902 44.277 4;5 3.1225E-33 21947 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 182.51 181.01 2248000000 318600000 291480000 288730000 23958000 26672000 20440000 370530000 273250000 254130000 18131000 17556000 19075000 43325000 56702000 58907000 0 0 0 33131000 94424000 38922000 0 0 0 15487 147 14990 291074;291075;291076;291077;291078;291079;291080;291081;291082;291083;291084;291085;291086;291087;291088;291089;291090;291091;291092;291093;291094;291095;291096;291097;291098;291099;291100;291101;291102;291103;291104;291105;291106;291107 178652;178653;178654;178655;178656;178657;178658;178659;178660;178661;178662;178663;178664;178665;178666;178667;178668;178669;178670;178671;178672;178673;178674;178675;178676;178677;178678;178679;178680;178681;178682 178657 31 NHYEYEVGHFENALEIPADTFR Unmodified 2650.2088 0.20883016 1238 P24188 yceA UPF0176 protein YceA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.186 41.506 3 8.817E-22 20103 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 163.95 162.25 83710000 0 0 0 0 0 0 7215500 0 0 5238300 4259300 4663000 3126500 4227300 7372300 0 0 3814000 15025000 14463000 12439000 0 0 1866500 15488 1238 14991 291108;291109;291110;291111;291112;291113;291114;291115;291116;291117;291118;291119 178683;178684 178683 2 NHYHGLPFK Unmodified 1111.5563 0.55631289 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 2 2 1 1 2 13.64 14.496 2;3 0.00011938 4657 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.6 125.26 495870000 96556000 81803000 96537000 0 0 0 36701000 37097000 42796000 0 0 0 15598000 15812000 16591000 0 0 0 13577000 15741000 27059000 0 0 0 15489 218 14992 291120;291121;291122;291123;291124;291125;291126;291127;291128;291129;291130;291131;291132;291133;291134;291135;291136;291137;291138;291139;291140 178685;178686;178687;178688;178689 178689 5 NIADAVNSVLTDTIADMSQDTSIHEFIK Unmodified 3047.4757 0.47574547 778 P0ADA5 yajG Uncharacterized lipoprotein YajG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.682 54.258 3 3.6119E-16 26626 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 146.57 140.41 352210000 0 17351000 18052000 4488300 5113600 0 0 0 15147000 12986000 13607000 19992000 19990000 18677000 20292000 0 0 0 42983000 51569000 49364000 14607000 11543000 16453000 15490 778 14993 291141;291142;291143;291144;291145;291146;291147;291148;291149;291150;291151;291152;291153;291154;291155;291156;291157 178690 178690 1 NIADKLER Unmodified 957.52434 0.52434406 1988 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 40.109 38.487 2 0.030348 18717 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 66.682 39.157 122380000 3881200 3163800 3898900 0 0 0 6505800 5937200 6162800 0 0 0 14753000 10740000 16225000 0 0 0 17360000 17740000 16017000 0 0 0 + 15491 1988 14994 291158;291159;291160;291161;291162;291163;291164;291165;291166;291167;291168;291169;291170;291171;291172;291173;291174;291175 178691;178692;178693;178694;178695;178696 178692 6 NIADSFLPALSK Unmodified 1274.6871 0.68705229 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.482 46.092 2 0.000104 22819 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 93.258 87.477 593630000 66111000 62238000 62994000 0 0 0 52811000 50242000 44572000 0 0 0 43216000 36083000 39892000 0 0 0 45553000 45012000 44907000 0 0 0 15492 148 14995 291176;291177;291178;291179;291180;291181;291182;291183;291184;291185;291186;291187 178697;178698;178699;178700;178701;178702;178703;178704;178705;178706 178698 10 NIAEEIPIWK Unmodified 1211.655 0.65502388 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 44.205 42.253 2 0.0038208 20872 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 70.816 70.816 92389000 0 0 0 0 0 0 32704000 29590000 30094000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15493 1609 14996 291188;291189;291190 178707 178707 1 NIAELRK Unmodified 842.4974 0.49740102 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 1 By matching By matching By MS/MS By MS/MS 1 1 1 1 12.585 12.816 2 0.041425 2746 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 66.138 15.599 20309000 0 0 0 0 0 0 0 0 0 0 0 601940 0 0 0 1323100 0 0 0 0 0 0 9493000 8891200 15494 1044 14997 291191;291192;291193;291194 178708;178709 178708 2 NIAELSGGEK Unmodified 1016.5138 0.51383895 1891 P77279 fetA Probable iron export ATP-binding protein FetA yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.062 16.897 2 0.00053204 6076 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 96.948 78.165 81076000 5571300 0 0 0 0 0 13643000 11101000 10876000 0 0 0 5696700 5100500 5749700 0 0 0 8003800 9040800 6292500 0 0 0 15495 1891 14998 291195;291196;291197;291198;291199;291200;291201;291202;291203;291204 178710;178711 178710 2 NIAHQVK Unmodified 808.45554 0.45553621 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 4 3 4 2 4 3 2 2 2 3 2 1 1 1 1 3 1 1 3 3 2 8.7989 9.4821 2 0.0014353 1885 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 130.05 116.06 20294000000 187140000 165450000 223280000 1971200000 1857500000 1758500000 656910000 597090000 594930000 296810000 321880000 255830000 61457000 80592000 80496000 148180000 93344000 95657000 187910000 229100000 290540000 3370100000 3005500000 3765100000 15496 939 14999 291205;291206;291207;291208;291209;291210;291211;291212;291213;291214;291215;291216;291217;291218;291219;291220;291221;291222;291223;291224;291225;291226;291227;291228;291229;291230;291231;291232;291233;291234;291235;291236;291237;291238;291239;291240;291241;291242;291243;291244;291245;291246;291247;291248;291249;291250;291251;291252;291253;291254;291255;291256;291257;291258;291259;291260 178712;178713;178714;178715;178716;178717;178718;178719;178720;178721;178722;178723;178724;178725;178726;178727;178728;178729;178730;178731;178732;178733;178734;178735;178736;178737;178738;178739;178740;178741;178742;178743;178744;178745;178746;178747;178748;178749;178750 178722 39 NIAHQVKK Unmodified 936.5505 0.55049923 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 9.2033 9.6161 2 3.5785E-07 868 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 153.15 141.59 2987000000 0 0 0 751260000 560750000 0 482390 0 610840 32771000 28509000 36333000 0 0 0 15078000 4024100 0 0 0 0 504630000 513920000 538630000 15497 939 15000 291261;291262;291263;291264;291265;291266;291267;291268;291269;291270;291271;291272;291273 178751;178752;178753;178754;178755;178756;178757;178758;178759 178759 9 NIAIEHSGYSVFAGVGER Unmodified 1904.9381 0.93807503 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 2 2 2 2 34.569 33.035 2;3 2.7452E-45 13264 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 263.75 261.43 4171400000 0 56769000 45004000 42267000 50236000 53098000 337090000 321750000 356120000 232410000 224430000 206740000 195410000 201300000 225050000 50842000 33157000 39725000 352310000 299510000 352990000 168130000 168690000 158380000 15498 646 15001 291274;291275;291276;291277;291278;291279;291280;291281;291282;291283;291284;291285;291286;291287;291288;291289;291290;291291;291292;291293;291294;291295;291296;291297;291298;291299;291300;291301;291302;291303;291304;291305;291306;291307;291308;291309;291310;291311;291312;291313;291314 178760;178761;178762;178763;178764;178765;178766;178767;178768;178769;178770;178771;178772;178773;178774;178775;178776;178777;178778;178779;178780;178781;178782;178783;178784;178785;178786;178787;178788;178789;178790;178791;178792;178793;178794;178795;178796 178766 31 NIAIIAHVDHGK Unmodified 1286.7095 0.70951906 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 1 2 1 2 1 2 1 1 16.012 16.693 2;3 7.2713E-07 5773 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.018 84.113 1070400000 71001000 255180000 49749000 1461000 0 1095500 73981000 72451000 74951000 0 3390800 1489100 74238000 78259000 69555000 0 0 0 68529000 87116000 86272000 0 1735400 0 15499 1388 15002 291315;291316;291317;291318;291319;291320;291321;291322;291323;291324;291325;291326;291327;291328;291329;291330;291331;291332;291333;291334;291335;291336;291337;291338;291339;291340;291341 178797;178798;178799;178800;178801;178802;178803;178804;178805;178806;178807;178808;178809;178810;178811;178812;178813;178814;178815;178816 178812 20 NIALIFEK Unmodified 946.54877 0.54876789 89 P04391;P06960 argI;argF Ornithine carbamoyltransferase chain I;Ornithine carbamoyltransferase chain F yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 38.219 36.602 2 0.039653 17793 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 61.962 44.692 31802000 9792600 8985000 10322000 0 0 0 0 2703000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15500 89 15003 291342;291343;291344;291345 178817;178818;178819 178817 3 NIALQAAQPLVHGVSLTLQR Unmodified 2128.2117 0.21167112 1425 P33593 nikD Nickel import ATP-binding protein NikD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 45.08 43.047 3 1.3172E-07 17187 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 108.71 103.73 34952000 0 0 0 0 0 0 0 0 0 7826900 7234400 7830200 0 0 0 0 0 0 0 0 5496300 0 2995400 3568700 15501 1425 15004 291346;291347;291348;291349;291350;291351 178820;178821;178822;178823 178822 4 NIAQAESEIK Unmodified 1101.5666 0.5666028 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 17.077 17.82 2 9.1959E-05 4804 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 131.22 100.66 92045000 8685300 8606700 8391000 24359000 20280000 21723000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15502 114 15005 291352;291353;291354;291355;291356;291357 178824;178825;178826 178824 3 NICECSKPHIANGPVHDK Unmodified 2074.9677 0.96767737 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 11.791 12.597 4 0.16789 3287 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 10.687 7.8739 124460000 0 0 0 0 0 0 17791000 22981000 19225000 0 0 1110800 16105000 15304000 10450000 0 0 0 0 10551000 10938000 0 0 0 15503 1467 15006 291358;291359;291360;291361;291362;291363;291364;291365;291366 178827 178827 1 NICFNNAR Unmodified 1007.4607 0.46069794 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 15.884 16.918 2 0.014996 5633 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 70.912 66.058 32188000 0 0 0 0 0 0 0 0 0 0 0 0 16629000 0 15560000 0 0 0 0 0 0 0 0 0 15504 427 15007 291367;291368;291369 178828;178829;178830 178828 3 NICMVYAHNDDMVIGAIQAIK Unmodified 2375.1436 0.14359283 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 47.53 46.096 3 8.4663E-05 22346 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 76.176 75.389 290110000 92173000 99277000 91673000 0 0 0 0 3596800 3394200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15505 1525 15008 291370;291371;291372;291373;291374 178831;178832 178832 2 NICWFGDEA Unmodified 1110.444 0.44404482 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 50.057 48.829 1;2 0.0094468 19013 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 66.087 66.087 3498200000 39768000 40825000 35682000 955700 935640 816240 21952000 19506000 16245000 176840000 158700000 153430000 39975000 35626000 34352000 661890000 355460000 468130000 42481000 35383000 38788000 348800000 415790000 355860000 15506 935 15009 291375;291376;291377;291378;291379;291380;291381;291382;291383;291384;291385;291386;291387;291388;291389;291390;291391;291392;291393;291394;291395;291396;291397;291398;291399;291400;291401;291402;291403;291404;291405;291406;291407;291408;291409;291410;291411;291412;291413;291414;291415;291416;291417;291418;291419 178833;178834;178835;178836;178837;178838;178839;178840;178841 178833 9 NIDFTNHPAAADPVTMR Unmodified 1868.8839 0.88393097 763 P0AD10 yecJ Uncharacterized protein YecJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 1 1 1 29.74 28.366 2;3 3.1391E-31 13147 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 238.43 237.12 908570000 60358000 48412000 44047000 4879500 4012900 0 75389000 76603000 68926000 10546000 10432000 10413000 60506000 60493000 54744000 4195800 1798400 3148700 103800000 94134000 90544000 5713200 6761200 8713600 15507 763 15010 291420;291421;291422;291423;291424;291425;291426;291427;291428;291429;291430;291431;291432;291433;291434;291435;291436;291437;291438;291439;291440;291441;291442;291443;291444;291445;291446;291447;291448;291449;291450;291451;291452;291453;291454;291455;291456;291457 178842;178843;178844;178845;178846;178847;178848;178849;178850;178851;178852;178853;178854;178855;178856;178857;178858;178859;178860;178861;178862;178863;178864;178865;178866 178852 25 NIDNEHMYLDPIK Unmodified 1600.7555 0.75554256 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 2 2 2 1 1 1 30.552 29.12 2;3 3.6392E-12 13133 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 213.38 203 553330000 5109400 4322000 4303800 0 0 0 108430000 111700000 111780000 0 0 1826600 67164000 63042000 63573000 0 0 0 3508700 4188900 4382000 0 0 0 15508 520 15011 291458;291459;291460;291461;291462;291463;291464;291465;291466;291467;291468;291469;291470;291471;291472;291473;291474;291475;291476 178867;178868;178869;178870;178871;178872;178873;178874;178875;178876;178877;178878 178874 12 NIDVLIADTAGR Unmodified 1256.6725 0.67246486 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 38.174 36.423 2 1.4627E-05 17645 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 164.85 126.28 561620000 39998000 38959000 33342000 3282000 3664500 3056500 47459000 54981000 49212000 18135000 14004000 11553000 34915000 25562000 30081000 0 0 5137800 49449000 40344000 37567000 8861300 5704500 6348000 15509 1052 15012 291477;291478;291479;291480;291481;291482;291483;291484;291485;291486;291487;291488;291489;291490;291491;291492;291493;291494;291495;291496;291497;291498;291499;291500 178879;178880;178881;178882;178883;178884;178885;178886;178887;178888;178889;178890;178891;178892;178893;178894;178895;178896;178897 178888 12 NIDWLDGEGNDQVQESVK Unmodified 2044.9338 0.93377751 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 40.146 38.253 2;3 1.0066E-55 18634 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 289.38 287.14 556630000 11851000 9002200 9045400 1108500 1263600 1273100 30471000 35477000 30593000 17421000 15410000 13802000 27110000 27515000 29259000 0 0 0 52243000 50046000 47644000 50146000 50805000 45144000 15510 205 15013 291501;291502;291503;291504;291505;291506;291507;291508;291509;291510;291511;291512;291513;291514;291515;291516;291517;291518;291519;291520;291521;291522;291523;291524;291525;291526;291527;291528;291529;291530;291531;291532;291533;291534;291535;291536;291537 178898;178899;178900;178901;178902;178903;178904;178905;178906;178907;178908;178909;178910;178911;178912;178913;178914;178915;178916;178917;178918;178919 178909 20 NIEFFEAR Unmodified 1024.4978 0.49779495 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.661 33.165 2 0.00065895 12973 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 128.61 36.137 4779200000 597810000 521760000 467500000 22307000 23036000 21992000 223100000 221140000 228820000 37909000 35725000 40930000 274920000 253890000 230350000 50745000 33137000 33202000 447120000 444810000 434600000 46750000 46505000 41150000 15511 364 15014 291538;291539;291540;291541;291542;291543;291544;291545;291546;291547;291548;291549;291550;291551;291552;291553;291554;291555;291556;291557;291558;291559;291560;291561 178920;178921;178922;178923;178924;178925;178926;178927;178928;178929;178930;178931;178932;178933;178934;178935;178936;178937;178938;178939;178940;178941;178942;178943;178944 178924 25 NIELMASPSIMQR Unmodified 1488.7429 0.74286938 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.078 38.413 2 1.6021E-12 18000 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 219.03 183.09 281120000 31002000 29147000 28039000 0 0 0 26526000 23515000 21439000 0 0 0 18395000 18092000 17984000 0 0 0 22665000 22633000 21686000 0 0 0 15512 1774 15015 291562;291563;291564;291565;291566;291567;291568;291569;291570;291571;291572;291573 178945;178946;178947;178948;178949 178947 5 NIETFHTAQK Unmodified 1187.5935 0.59348625 140 P06988 hisD Histidinol dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 12.564 13.239 2 9.7813E-06 3832 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.55 90.1 52277000 25830000 26447000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15513 140 15016 291574;291575;291576 178950;178951 178951 2 NIFGLANPDDVR Unmodified 1329.6677 0.66771383 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.775 38.796 2 2.7077E-06 13682 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 167.67 156.45 99594000 0 0 0 25586000 27901000 23841000 0 0 0 0 994600 0 0 0 0 0 0 0 0 0 0 8558400 7212600 5499300 15514 1904 15017 291577;291578;291579;291580;291581;291582;291583 178952;178953;178954;178955;178956;178957;178958 178956 7 NIFGYQYTIPTHQGR Unmodified 1793.8849 0.88491725 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 2 4 4 2 1 1 3 2 3 1 1 1 3 2 2 2 2 2 33.938 32.411 2;3;4 1.326E-57 15250 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 315.64 300.95 32198000000 5416300000 4778500000 4363500000 43068000 48370000 51285000 3058500000 3084200000 2693300000 12498000 7467400 5411600 1353800000 1422200000 1425700000 7925700 8043100 7453200 1520800000 1481800000 1362200000 17957000 11207000 16616000 15515 397 15018 291584;291585;291586;291587;291588;291589;291590;291591;291592;291593;291594;291595;291596;291597;291598;291599;291600;291601;291602;291603;291604;291605;291606;291607;291608;291609;291610;291611;291612;291613;291614;291615;291616;291617;291618;291619;291620;291621;291622;291623;291624;291625;291626;291627;291628;291629;291630;291631;291632;291633;291634;291635 178959;178960;178961;178962;178963;178964;178965;178966;178967;178968;178969;178970;178971;178972;178973;178974;178975;178976;178977;178978;178979;178980;178981;178982;178983;178984;178985;178986;178987;178988;178989;178990;178991;178992;178993;178994;178995;178996;178997;178998;178999 178989 41 NIFLVGPMGAGK Unmodified 1202.6482 0.64816436 233 P0A6D7 aroK Shikimate kinase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.491 40.722 2 0.00026623 18894 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 102.61 100.42 1012100000 94214000 78958000 86008000 1942500 1885300 1621400 78830000 83090000 75125000 3988000 2901000 4358700 77513000 71978000 70838000 2388600 0 0 89603000 91490000 93556000 0 1836800 0 15516 233 15019 291636;291637;291638;291639;291640;291641;291642;291643;291644;291645;291646;291647;291648;291649;291650;291651;291652;291653;291654;291655 179000;179001;179002;179003;179004;179005;179006;179007;179008;179009;179010;179011;179012;179013;179014 179014 14 NIFQSDHPVAMMK Unmodified 1516.7167 0.71665463 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 27.772 26.793 2;3 4.5103E-07 12141 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.62 121.97 297620000 99344000 108770000 86084000 0 0 727990 0 0 0 0 0 0 0 0 0 0 0 0 0 2700500 0 0 0 0 15517 1822 15020 291656;291657;291658;291659;291660;291661;291662;291663 179015;179016;179017;179018 179016 4 NIGDALK Unmodified 729.4021 0.40210366 1547 P39838 rcsD Phosphotransferase RcsD yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 17.567 18.206 1 0.0099424 6627 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.21 19.83 1162300000 10251000 9372500 6486500 0 0 0 508170000 7912100 8440700 0 0 0 277180000 12356000 258120000 0 0 0 19773000 20874000 22342000 0 1027900 0 15518 1547 15021 291664;291665;291666;291667;291668;291669;291670;291671;291672;291673;291674;291675;291676 179019;179020;179021;179022;179023 179019 5 NIGEILELAGCDR Unmodified 1458.7137 0.71367774 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 3 1 2 1 1 1 2 3 2 1 1 2 2 2 1 1 1 2 2 2 1 47.547 46.214 2;3 8.9055E-09 22391 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 194.17 186.01 13193000000 955280000 861080000 876380000 7108100 3337000 2756000 1292500000 1215400000 989180000 2181900 1680500 0 1353400000 1098100000 1061900000 3387100 1649300 1789200 1113500000 1216500000 1134200000 2152900 0 0 15519 402 15022 291677;291678;291679;291680;291681;291682;291683;291684;291685;291686;291687;291688;291689;291690;291691;291692;291693;291694;291695;291696;291697;291698;291699;291700;291701;291702;291703;291704;291705;291706;291707;291708;291709;291710 179024;179025;179026;179027;179028;179029;179030;179031;179032;179033;179034;179035;179036;179037;179038;179039;179040;179041;179042;179043;179044;179045;179046;179047;179048 179044 25 NIGISAHIDAGK Unmodified 1194.6357 0.63568542 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 8 6 6 2 1 2 6 7 6 1 1 5 7 6 1 1 6 7 8 1 1 1 20.887 20.933 2;3 1.746E-05 7646 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.29 111.02 6829500000 638560000 593240000 530060000 13479000 4968500 12089000 761120000 725350000 608220000 2762500 2149200 0 461010000 384610000 341220000 0 605270 650450 559140000 560660000 624810000 2140400 245490 2429600 15520 264 15023 291711;291712;291713;291714;291715;291716;291717;291718;291719;291720;291721;291722;291723;291724;291725;291726;291727;291728;291729;291730;291731;291732;291733;291734;291735;291736;291737;291738;291739;291740;291741;291742;291743;291744;291745;291746;291747;291748;291749;291750;291751;291752;291753;291754;291755;291756;291757;291758;291759;291760;291761;291762;291763;291764;291765;291766;291767;291768;291769;291770;291771;291772;291773;291774;291775;291776;291777;291778;291779;291780;291781;291782;291783;291784;291785;291786;291787;291788;291789;291790;291791;291792;291793;291794;291795;291796;291797;291798;291799;291800 179049;179050;179051;179052;179053;179054;179055;179056;179057;179058;179059;179060;179061;179062;179063;179064;179065;179066;179067;179068;179069;179070;179071;179072;179073;179074;179075;179076;179077;179078;179079;179080;179081;179082;179083;179084;179085;179086;179087;179088;179089;179090;179091;179092;179093;179094;179095;179096;179097;179098;179099;179100;179101;179102;179103;179104;179105;179106;179107;179108;179109;179110;179111;179112;179113;179114;179115;179116;179117;179118;179119;179120;179121;179122;179123;179124;179125;179126;179127;179128;179129;179130;179131;179132;179133;179134;179135;179136;179137;179138;179139 179050 85 NIGIYPEIK Unmodified 1045.5808 0.5807963 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.309 30.969 2 0.0032424 13895 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 82.279 71.21 1062300000 53911000 59581000 48514000 0 0 0 95897000 96340000 99941000 0 0 0 129960000 113860000 114090000 0 0 0 87202000 80355000 82700000 0 0 0 15521 213 15024 291801;291802;291803;291804;291805;291806;291807;291808;291809;291810;291811;291812 179140;179141;179142;179143;179144;179145;179146;179147;179148;179149;179150 179150 11 NIGLLNK Unmodified 770.46504 0.46503826 347 P0A7I7 ribA GTP cyclohydrolase-2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 21.851 21.765 2 0.033053 9231 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 66.138 33.667 259740000 0 0 38008000 1086400 0 0 58304000 57629000 0 0 0 1190000 53360000 0 48168000 1046200 565570 383700 0 0 0 0 0 0 15522 347 15025 291813;291814;291815;291816;291817;291818;291819;291820;291821;291822 179151;179152;179153;179154 179152 2 NIGPAGLTIVIVR Unmodified 1321.8082 0.80817048 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 46.589 45.162 2;3 2.0637E-05 21827 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.745 92.229 1621900000 187200000 167560000 150710000 28214000 35810000 28854000 135740000 116520000 116530000 38361000 36200000 38171000 71646000 74044000 64384000 4413600 2433700 3114600 109440000 108640000 94692000 2184300 3588300 3485100 15523 1211 15026 291823;291824;291825;291826;291827;291828;291829;291830;291831;291832;291833;291834;291835;291836;291837;291838;291839;291840;291841;291842;291843;291844;291845;291846;291847;291848;291849;291850;291851;291852;291853;291854;291855;291856;291857;291858;291859;291860;291861 179155;179156;179157;179158;179159;179160;179161;179162;179163;179164;179165;179166;179167;179168;179169;179170;179171;179172;179173;179174;179175;179176;179177;179178;179179 179177 23 NIGPAGLTIVIVREDLLGK Unmodified 1977.1623 0.16226131 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 53.66 52.342 3 3.2733E-07 19119 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 106.16 106.16 18873000 0 0 0 5237400 5938200 7697900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15524 1211 15027 291862;291863;291864 179180;179181;179182 179181 3 NIGVNDWQPHANPVVVWDIFGEK Unmodified 2633.3027 0.30267097 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.846 52.475 3 8.1421E-08 25965 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.26 110.11 144250000 36642000 31958000 39755000 0 0 0 0 0 0 0 0 0 6436500 7042500 7372100 0 0 0 0 7916100 7132000 0 0 0 15525 1528 15028 291865;291866;291867;291868;291869;291870;291871;291872 179183;179184;179185 179183 3 NIGVNVK Unmodified 742.43374 0.43373813 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.966 14.869 2 0.028663 3486 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 68.398 41.602 7935900000 2149700000 2013600000 1834000000 6758500 353680 8160600 0 323750000 281840000 0 0 0 203760000 221420000 176400000 0 0 0 253200000 255740000 207180000 0 0 0 15526 1217 15029 291873;291874;291875;291876;291877;291878;291879;291880;291881;291882;291883;291884;291885;291886 179186;179187;179188;179189;179190;179191;179192;179193 179190 8 NIHDWNDLVR Unmodified 1280.6262 0.62618337 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 28.644 27.386 2;3 3.2465E-05 12669 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.91 125.6 2737300000 280280000 231940000 197490000 837880 0 0 248790000 269780000 266590000 0 0 0 180910000 174070000 159100000 0 0 0 254780000 244420000 228270000 0 0 0 15527 1132 15030 291887;291888;291889;291890;291891;291892;291893;291894;291895;291896;291897;291898;291899;291900;291901;291902;291903;291904;291905;291906;291907;291908;291909;291910;291911 179194;179195;179196;179197;179198;179199;179200;179201;179202;179203;179204;179205;179206;179207;179208;179209;179210;179211;179212;179213;179214;179215;179216;179217 179201 24 NIHHDNCK Unmodified 1036.4509 0.45086154 1847 P76290 cmoA tRNA (cmo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 4.2259 5.089 2 0.013351 963 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.616 73.616 46275000 5013100 4380900 3928300 65265 0 0 0 0 0 0 0 0 3162100 3328000 2744200 0 0 0 8521500 7556800 7575000 0 0 0 15528 1847 15031 291912;291913;291914;291915;291916;291917;291918;291919;291920;291921 179218;179219;179220;179221;179222;179223;179224;179225;179226 179222 9 NIHQQALR Unmodified 978.53591 0.5359118 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.619 11.435 2 0.0008022 2738 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.54 117 1009900000 203770000 211310000 189230000 0 0 0 28008000 29003000 31883000 0 0 0 46190000 47682000 43808000 0 0 0 61689000 64937000 52395000 0 0 0 15529 104 15032 291922;291923;291924;291925;291926;291927;291928;291929;291930;291931;291932;291933 179227;179228;179229;179230;179231;179232;179233;179234;179235;179236;179237;179238 179235 12 NIIAGLPGAEEGYTLDQFR Unmodified 2063.0324 0.032369346 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 50.777 49.442 2;3 5.6093E-23 24050 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 198.33 192.68 740480000 75785000 81747000 74515000 0 777210 0 57327000 64834000 62838000 0 0 0 62733000 55139000 54921000 0 0 0 47643000 55006000 47212000 0 0 0 15530 1244 15033 291934;291935;291936;291937;291938;291939;291940;291941;291942;291943;291944;291945;291946;291947;291948;291949;291950;291951;291952;291953;291954;291955;291956;291957;291958 179239;179240;179241;179242;179243;179244;179245;179246;179247;179248;179249;179250;179251;179252;179253 179243 15 NIIAGLPGAEEGYTLDQFRK Unmodified 2191.1273 0.12733236 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 43.187 41.648 3 4.6648E-07 20399 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.21 92.12 119880000 23348000 15923000 5579300 0 0 0 11212000 9634200 10312000 0 0 0 0 7847900 7230600 0 0 0 12417000 8314700 8061700 0 0 0 15531 1244 15034 291959;291960;291961;291962;291963;291964;291965;291966;291967;291968;291969 179254 179254 1 NIIAVSSGK Unmodified 887.50763 0.50763136 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.728 17.265 2 0.00069069 6221 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.74 89.204 1325600000 100170000 115580000 102630000 3514400 3858200 5061500 151020000 125800000 129460000 7784400 5992900 2392000 96646000 95391000 74784000 2473000 1799300 2297900 99756000 106530000 92662000 0 0 0 15532 902 15035 291970;291971;291972;291973;291974;291975;291976;291977;291978;291979;291980;291981;291982;291983;291984;291985;291986;291987;291988;291989;291990 179255;179256;179257;179258;179259;179260;179261;179262;179263;179264;179265 179256 11 NIIFAINK Unmodified 931.5491 0.54910224 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 33.667 32.236 2 0.0008022 12313 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 122.54 87.048 1500200000 45832000 47037000 39120000 0 0 0 168090000 148950000 130520000 40503000 33875000 29179000 85268000 91583000 78596000 35047000 28121000 29362000 139790000 149270000 151580000 11346000 8476500 8678800 15533 30 15036 291991;291992;291993;291994;291995;291996;291997;291998;291999;292000;292001;292002;292003;292004;292005;292006;292007;292008;292009;292010;292011;292012;292013 179266;179267;179268;179269;179270;179271;179272;179273;179274;179275;179276;179277;179278;179279;179280;179281;179282;179283;179284;179285 179274 19 NIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTK Unmodified 4154.1225 0.12252834 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 2 2 2 2 53.343 51.972 4;5 3.8631E-29 21171 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 166.88 165.63 432970000 0 0 0 0 0 0 32345000 34970000 27001000 46711000 37839000 38721000 20625000 17437000 15894000 0 6338700 0 14838000 21987000 39785000 27664000 24343000 26474000 15534 723 15037 292014;292015;292016;292017;292018;292019;292020;292021;292022;292023;292024;292025;292026;292027;292028;292029;292030;292031;292032;292033;292034;292035;292036 179286;179287;179288;179289;179290;179291;179292;179293;179294;179295;179296 179288 11 NIILLIGDGMGDSEITAAR Unmodified 1958.0143 0.014276441 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 53.185 52.03 2;3 8.5109E-56 25653 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 287.04 266.25 1573600000 0 0 0 1563100 1255400 1265600 83941000 100340000 96783000 1569800 0 1960400 228550000 224060000 213840000 7424800 5171800 6007900 193400000 201720000 194920000 2951900 2966100 3952500 15535 38 15038 292037;292038;292039;292040;292041;292042;292043;292044;292045;292046;292047;292048;292049;292050;292051;292052;292053;292054;292055;292056;292057;292058;292059;292060;292061;292062;292063;292064;292065;292066;292067;292068 179297;179298;179299;179300;179301;179302;179303;179304;179305;179306;179307;179308;179309;179310;179311;179312;179313;179314;179315 179302 19 NIILSSQPGTDDR Unmodified 1414.7052 0.70522155 672 P0ABQ4 folA Dihydrofolate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.922 23.025 2 2.9809E-31 9703 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 255.7 245.75 798590000 58164000 54692000 54309000 0 0 0 64225000 56983000 61957000 0 0 0 69288000 58788000 61371000 0 0 0 84371000 89690000 84749000 0 0 0 15536 672 15039 292069;292070;292071;292072;292073;292074;292075;292076;292077;292078;292079;292080 179316;179317;179318;179319;179320;179321;179322;179323;179324;179325;179326;179327 179325 12 NIIQHVENNR Unmodified 1235.6371 0.6370824 693 P0AC19 folX D-erythro-7,8-dihydroneopterin triphosphate epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 13.296 14.162 2;3 0.00019392 4446 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.23 114.84 990230000 100510000 93041000 86857000 0 0 0 78497000 88326000 72793000 0 0 0 74908000 68960000 58251000 0 0 0 97978000 86291000 83818000 0 0 0 15537 693 15040 292081;292082;292083;292084;292085;292086;292087;292088;292089;292090;292091;292092;292093;292094;292095;292096;292097;292098;292099;292100;292101;292102;292103;292104 179328;179329;179330;179331;179332;179333;179334;179335;179336;179337;179338;179339;179340;179341;179342 179337 13 NIIQLVDAGMK Unmodified 1200.6536 0.65364367 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.496 41.981 2 0.00072636 20365 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.65 50.58 522780000 154400000 173080000 145560000 0 0 0 8803400 9021600 8254300 0 0 0 4404500 4242700 745360 0 0 0 4204300 5519400 4539500 0 0 0 15538 1822 15041 292105;292106;292107;292108;292109;292110;292111;292112;292113;292114;292115;292116 179343;179344;179345 179344 3 NIKEQIAVLK Unmodified 1154.7023 0.70230842 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 20.71 20.958 2;3 0.0019325 6169 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 67.704 44.331 36417000 0 0 0 9134500 9147900 9120400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4734900 4279300 0 15539 1899 15042 292117;292118;292119;292120;292121;292122;292123;292124 179346;179347;179348;179349;179350 179346 3 NIKVDEAGFEAAMEEQR Unmodified 1935.8996 0.89964061 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 33.54 31.965 3 0.14641 12429 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 32.55 27.007 12769000 0 0 0 1300600 1344800 0 0 0 0 0 3483300 0 0 0 0 0 0 1016700 0 0 0 3818300 0 1805400 15540 59 15043 292125;292126;292127;292128;292129;292130 179351 179351 0 NILDWALR Unmodified 999.55016 0.55016488 1858 P76418 yegU Uncharacterized protein YegU yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.016 48.61 2 0.0004415 24023 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.9 91.828 78871000 6377800 5822600 5454400 0 0 0 7773100 6971900 7793600 0 0 0 7517800 5394700 4922900 0 0 0 7818900 7027400 5996300 0 0 0 15541 1858 15044 292131;292132;292133;292134;292135;292136;292137;292138;292139;292140;292141;292142 179352;179353;179354 179354 3 NILGDVFHR Unmodified 1069.5669 0.56687757 129 P06720 melA Alpha-galactosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 33.25 32.011 2;3 0.0003982 15263 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 96.948 93.376 42150000 15603000 13721000 12826000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15542 129 15045 292143;292144;292145;292146;292147 179355;179356;179357;179358;179359 179357 5 NILLVADHTK Unmodified 1122.6397 0.63970816 1389 P32144 yihW Uncharacterized HTH-type transcriptional regulator YihW yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 20.64 21.026 2 0.13702 8283 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 40.994 37.586 43619000 9379300 10027000 9538000 0 0 0 1822900 0 0 0 0 0 0 0 0 0 0 0 3586900 4926900 4338100 0 0 0 15543 1389 15046 292148;292149;292150;292151;292152;292153;292154 179360 179360 0 NILMIGPTGVGK Unmodified 1198.6744 0.67437911 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.234 36.618 2 8.0032E-06 17631 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.52 122.98 1792500000 119140000 136540000 146890000 11897000 10769000 11228000 137640000 138380000 129470000 37542000 36901000 37809000 103590000 122890000 100720000 14946000 7779600 8219200 134940000 137070000 138180000 22635000 23188000 24104000 15544 245 15047 292155;292156;292157;292158;292159;292160;292161;292162;292163;292164;292165;292166;292167;292168;292169;292170;292171;292172;292173;292174;292175;292176;292177;292178 179361;179362;179363;179364;179365;179366;179367;179368;179369;179370;179371;179372;179373;179374;179375;179376;179377;179378;179379 179376 18 NILNELQK Unmodified 970.54475 0.54474515 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.575 27.286 2 0.0019749 12564 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.37 54.239 485610000 118140000 114670000 100290000 1169700 1731100 1663800 20749000 20630000 19856000 0 0 0 14070000 11681000 12885000 0 0 0 14878000 16050000 17154000 0 0 0 15545 733 15048 292179;292180;292181;292182;292183;292184;292185;292186;292187;292188;292189;292190;292191;292192;292193 179380;179381;179382;179383;179384;179385;179386;179387 179384 8 NILVVVPSHVFGEVLR Unmodified 1777.025 0.025039544 276 P0A6S7 gpsA Glycerol-3-phosphate dehydrogenase [NAD(P)+] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 49.48 48.116 2;3 7.2727E-10 23392 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 135.6 135.6 852650000 103900000 105290000 81803000 0 690650 0 58083000 55853000 56868000 0 0 0 57421000 45829000 54449000 0 0 0 86952000 76401000 69106000 0 0 0 15546 276 15049 292194;292195;292196;292197;292198;292199;292200;292201;292202;292203;292204;292205;292206;292207;292208;292209;292210;292211;292212;292213;292214;292215;292216;292217;292218 179388;179389;179390;179391;179392;179393;179394;179395;179396;179397;179398;179399;179400;179401;179402;179403;179404;179405;179406;179407;179408;179409 179396 21 NIMGTGFDFELFVHTGAGR Unmodified 2067.9836 0.98364501 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 52.512 51.266 3 2.808E-10 18551 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 127.78 127.74 125740000 0 0 0 8575600 16215000 15008000 9168100 0 0 18232000 16601000 16048000 0 0 0 1529000 0 0 0 0 0 12779000 0 11589000 15547 1383 15050 292219;292220;292221;292222;292223;292224;292225;292226;292227;292228 179410;179411;179412;179413;179414;179415;179416;179417;179418 179417 9 NINLDIAK Unmodified 899.50763 0.50763136 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 3 3 2 2 2 2 2 2 2 2 2 3 2 3 2 2 2 25.142 24.373 1;2 0.0010158 11597 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 113.5 18.147 2302000000 10633000 13444000 9553000 0 0 0 174930000 200220000 203560000 10306000 111600000 88866000 207620000 19466000 169620000 40940000 33805000 37628000 336590000 31620000 307780000 99128000 90228000 104460000 15548 594 15051 292229;292230;292231;292232;292233;292234;292235;292236;292237;292238;292239;292240;292241;292242;292243;292244;292245;292246;292247;292248;292249;292250;292251;292252;292253;292254;292255;292256;292257;292258;292259;292260;292261;292262;292263;292264;292265;292266;292267;292268;292269;292270;292271 179419;179420;179421;179422;179423;179424;179425;179426;179427;179428;179429;179430;179431;179432;179433 179426 13 NINLDIAKNQVTAFIGPSGCGK Unmodified 2316.1896 0.18961504 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 1 By MS/MS By MS/MS 1 1 37.705 36.233 4 0.16976 16852 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 7.5332 0 33681000 0 0 0 0 0 0 0 0 0 0 0 0 0 17072000 16609000 0 0 0 0 0 0 0 0 0 15549 594 15052 292272;292273 179434;179435 179434 2 NINLTAQDVVVGIAASGR Unmodified 1796.9745 0.97446054 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 46.686 45.293 2 5.5268E-29 22209 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 210.38 193.46 67895000 8512600 7328100 6127200 0 0 0 8864500 9016100 0 0 0 0 0 4819000 0 0 0 0 9224100 7900000 6103300 0 0 0 15550 1867 15053 292274;292275;292276;292277;292278;292279;292280;292281;292282 179436;179437;179438;179439;179440 179438 3 NINLVIPR Unmodified 937.5709 0.57090032 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.519 32.064 2 0.00030221 15307 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 146.94 142.19 461770000 34739000 25904000 21993000 0 2235900 1733800 23171000 27586000 27383000 6400700 6688100 6438400 16046000 15662000 14694000 55530000 48354000 54046000 22816000 18669000 20435000 4020600 3921000 3301000 15551 222 15054 292283;292284;292285;292286;292287;292288;292289;292290;292291;292292;292293;292294;292295;292296;292297;292298;292299;292300;292301;292302;292303;292304;292305 179441;179442;179443;179444;179445;179446;179447;179448;179449;179450;179451;179452;179453;179454;179455;179456;179457;179458;179459;179460 179452 20 NINMTSYASSK Unmodified 1214.5601 0.56013721 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.974 19.54 2 8.3411E-06 7399 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 148.94 146.52 957220000 166370000 161960000 142210000 0 0 0 102980000 118100000 108010000 0 0 0 24665000 18995000 21492000 0 0 0 32064000 28827000 31541000 0 0 0 15552 886 15055 292306;292307;292308;292309;292310;292311;292312;292313;292314;292315;292316;292317 179461;179462;179463;179464;179465;179466;179467;179468;179469;179470;179471;179472 179467 12 NINPTQTAAWQALQK Unmodified 1682.874 0.87401821 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 35.807 34.231 2;3 1.958E-16 16655 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 202.56 198.67 6346500000 639960000 552970000 508750000 2149600 1301500 2184200 854920000 788670000 739610000 2039400 2784000 2138100 351580000 342830000 354700000 1469100 0 608230 391090000 404710000 400860000 0 1189300 0 15553 277 15056 292318;292319;292320;292321;292322;292323;292324;292325;292326;292327;292328;292329;292330;292331;292332;292333;292334;292335;292336;292337;292338;292339;292340;292341;292342;292343;292344;292345;292346;292347;292348;292349;292350;292351;292352 179473;179474;179475;179476;179477;179478;179479;179480;179481;179482;179483;179484;179485;179486;179487;179488;179489;179490;179491;179492;179493;179494;179495;179496 179477 24 NIPFTLK Unmodified 831.48544 0.48543935 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 32.31 30.935 2 0.028578 14557 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.485 50.79 200190000 69422000 62878000 56358000 0 0 0 3499200 2751200 0 0 0 0 0 0 0 0 0 0 0 2874500 2403800 0 0 0 15554 1822 15057 292353;292354;292355;292356;292357;292358;292359 179497;179498;179499 179497 3 NIPLRVDLK Unmodified 1066.6499 0.64987892 1776 P75818 ybjP Uncharacterized lipoprotein YbjP yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 26.602 25.068 3 0.11493 8257 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 30.167 16.575 12234000 0 0 0 2606800 2074100 1683000 0 0 0 1761900 2446000 1662500 0 0 0 0 0 0 0 0 0 0 0 0 15555 1776 15058 292360;292361;292362;292363;292364;292365 179500;179501 179500 2 NIPLTVTVDK Unmodified 1098.6285 0.62847478 977 P0AG14 sohB Probable protease SohB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.44 28.78 2 0.014947 13917 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 62.823 53.901 109520000 10146000 0 0 0 1729200 1546100 29891000 0 0 9424900 9958300 8051300 0 0 0 2211200 0 0 0 0 25056000 3624300 4023500 3859400 15556 977 15059 292366;292367;292368;292369;292370;292371;292372;292373;292374;292375;292376;292377 179502;179503 179502 2 NIPVELHVLLNDDAETPTR Unmodified 2145.1066 0.10659692 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 2 2 2 2 2 2 43.131 41.545 2;3 1.9196E-29 20159 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 273.39 269.92 1625600000 106800000 100910000 93341000 2552500 2360600 2303800 299250000 286570000 243020000 0 1973300 0 53536000 51906000 45673000 0 0 0 104960000 112360000 118090000 0 0 0 15557 703 15060 292378;292379;292380;292381;292382;292383;292384;292385;292386;292387;292388;292389;292390;292391;292392;292393;292394;292395;292396;292397;292398;292399;292400;292401;292402 179504;179505;179506;179507;179508;179509;179510;179511;179512;179513;179514;179515;179516;179517;179518 179514 15 NIPVGSTVHNVEMK Unmodified 1523.7766 0.77661235 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 19.614 20.104 2;3 4.499E-08 7647 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.55 140.24 468600000 79462000 65583000 60996000 0 0 0 16039000 19063000 14288000 0 0 0 26880000 31131000 30621000 0 0 0 43319000 42127000 39095000 0 0 0 15558 1620 15061 292403;292404;292405;292406;292407;292408;292409;292410;292411;292412;292413;292414;292415;292416;292417;292418;292419;292420;292421;292422;292423;292424;292425;292426 179519;179520;179521;179522;179523;179524;179525;179526;179527;179528;179529;179530;179531;179532;179533;179534;179535;179536 179532 18 NIPVGSTVHNVEMKPGK Oxidation (M) 1821.9407 0.94071757 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 1 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.103 14.571 3 0.0001397 4444 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.826 65.729 158660000 33437000 33195000 0 0 0 0 9992000 7218400 0 3884700 2957000 3235100 0 9601800 6015900 5778700 2873200 2819300 0 20112000 13382000 4162600 0 0 15559 1620 15062 292427;292428;292429;292430;292431;292432;292433;292434;292435;292436;292437;292438;292439;292440;292441 179537;179538;179539;179540;179541;179542;179543;179544 179540 578 8 NIPVGSTVHNVEMKPGK Unmodified 1805.9458 0.94580295 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 17.119 17.589 2;3;4 1.7422E-18 6349 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 186.56 181.92 12120000000 1856500000 1756900000 1566000000 49456000 27056000 24432000 202950000 278050000 547010000 110720000 105870000 88774000 584450000 588760000 622160000 119960000 96420000 98741000 1005600000 991870000 1006800000 140130000 132250000 119010000 15560 1620 15062 292442;292443;292444;292445;292446;292447;292448;292449;292450;292451;292452;292453;292454;292455;292456;292457;292458;292459;292460;292461;292462;292463;292464;292465;292466;292467;292468;292469;292470;292471;292472;292473;292474;292475;292476;292477;292478;292479;292480;292481;292482;292483;292484;292485;292486;292487;292488;292489;292490;292491;292492;292493;292494;292495;292496;292497;292498;292499;292500;292501;292502;292503;292504;292505;292506;292507;292508 179545;179546;179547;179548;179549;179550;179551;179552;179553;179554;179555;179556;179557;179558;179559;179560;179561;179562;179563;179564;179565;179566;179567;179568;179569;179570;179571;179572;179573;179574;179575;179576;179577;179578;179579;179580;179581;179582;179583;179584;179585;179586;179587;179588;179589;179590;179591;179592;179593;179594;179595;179596;179597;179598;179599;179600;179601 179563 57 NIPYMSGPQWLHDFVLR Unmodified 2072.0302 0.030201277 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.097 51.648 3 5.8216E-09 25526 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.77 105 852520000 55064000 46541000 45491000 0 0 0 59604000 76862000 63928000 1685200 2625100 1647100 83236000 77866000 79952000 0 0 0 75238000 91696000 91089000 0 0 0 15561 1500 15063 292509;292510;292511;292512;292513;292514;292515;292516;292517;292518;292519;292520;292521;292522;292523 179602;179603;179604;179605;179606;179607;179608 179604 7 NIQDTNETLFYR Unmodified 1512.7209 0.72087161 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.035 31.449 2 8.5793E-31 14317 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 259.54 253.37 1956800000 124000000 95191000 83498000 1126500 0 0 162350000 138820000 139780000 0 1108800 0 176510000 155360000 157920000 0 0 0 235550000 245080000 237680000 1115400 736730 978500 15562 1283 15064 292524;292525;292526;292527;292528;292529;292530;292531;292532;292533;292534;292535;292536;292537;292538;292539;292540 179609;179610;179611;179612;179613;179614;179615;179616;179617;179618;179619;179620 179619 12 NIQFAILER Unmodified 1102.6135 0.61349341 191 P08660 lysC Lysine-sensitive aspartokinase 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 40.495 38.727 2 0.031343 19445 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 62.582 52.595 110200000 6463100 0 5951500 1605200 0 1951800 15378000 14324000 16240000 0 0 0 0 0 0 0 0 0 17764000 15424000 15095000 0 0 0 15563 191 15065 292541;292542;292543;292544;292545;292546;292547;292548;292549;292550 179621;179622;179623;179624;179625;179626 179621 3 NISDDLR Unmodified 831.40865 0.4086456 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.072 17.804 2 0.0059588 6056 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.473 53.066 1674500000 336700000 339650000 291770000 0 0 0 183680000 159970000 148440000 0 0 0 25407000 23520000 24656000 0 0 0 47835000 44015000 48890000 0 0 0 15564 703 15066 292551;292552;292553;292554;292555;292556;292557;292558;292559;292560;292561;292562 179627;179628;179629;179630;179631;179632;179633;179634;179635;179636;179637 179637 11 NISLSFFPGAK Unmodified 1179.6288 0.62880913 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.597 43.975 2 0.00021018 21875 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.19 99.446 2004100000 158660000 165360000 166770000 6202800 6499000 0 170770000 152620000 163800000 8751300 6830200 6292100 120330000 108500000 106260000 0 0 0 217900000 231140000 200130000 3076600 4176800 0 15565 561 15067 292563;292564;292565;292566;292567;292568;292569;292570;292571;292572;292573;292574;292575;292576;292577;292578;292579;292580;292581 179638;179639;179640;179641;179642;179643;179644;179645;179646;179647;179648;179649;179650 179638 13 NISPHLQR Unmodified 963.52501 0.52501276 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.004 12.838 2 0.00050284 3641 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.35 80.825 565100000 52477000 55034000 55397000 0 544520 934220 47187000 49968000 56668000 0 421570 0 40434000 45214000 45444000 0 0 0 42277000 38904000 34199000 0 0 0 15566 421 15068 292582;292583;292584;292585;292586;292587;292588;292589;292590;292591;292592;292593;292594;292595;292596 179651;179652;179653;179654;179655;179656;179657 179651 7 NISVTEVHAR Unmodified 1124.5938 0.5938206 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 3 2 1 2 2 2 2 2 1 1 1 2 2 2 13.974 14.666 2;3 3.1496E-07 4710 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187 174.47 2856200000 293500000 248960000 219290000 2589600 524010 0 247450000 274900000 264740000 1342100 1521600 1757800 180160000 213330000 178070000 712560 759790 748070 238650000 258850000 228290000 0 0 0 15567 688 15069 292597;292598;292599;292600;292601;292602;292603;292604;292605;292606;292607;292608;292609;292610;292611;292612;292613;292614;292615;292616;292617;292618;292619;292620;292621;292622;292623;292624;292625;292626;292627;292628;292629;292630;292631;292632 179658;179659;179660;179661;179662;179663;179664;179665;179666;179667;179668;179669;179670;179671;179672;179673;179674;179675;179676;179677;179678;179679;179680 179671 23 NITDIDDK Unmodified 932.44509 0.44509068 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.192 17.008 2 0.01206 5954 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.738 58.373 830440000 60959000 48898000 57094000 0 0 0 76217000 84656000 89419000 0 0 0 63269000 65519000 63340000 0 0 0 73611000 78748000 68707000 0 0 0 15568 1188 15070 292633;292634;292635;292636;292637;292638;292639;292640;292641;292642;292643;292644 179681;179682 179681 2 NITFDGLVAAYR Unmodified 1338.6932 0.6932003 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.022 45.498 2 1.1501E-06 18622 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 111.65 99.064 101940000 12160000 0 12952000 2001000 1876400 1861800 7700300 8835000 0 0 5577700 3738600 7872800 5540400 5710000 0 0 0 9555400 0 8878000 2044400 2396600 3239500 15569 1083 15071 292645;292646;292647;292648;292649;292650;292651;292652;292653;292654;292655;292656;292657;292658;292659;292660;292661;292662 179683;179684;179685;179686 179683 4 NITGIVMDLK Unmodified 1102.6056 0.60563084 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 40.757 38.762 2 0.0020509 15406 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 81.163 74.524 51711000 0 0 0 0 1773300 0 0 0 0 5626400 4675500 5159100 10039000 8602700 7104200 0 0 0 0 0 0 3281100 2961100 2488700 15570 188 15072 292663;292664;292665;292666;292667;292668;292669;292670;292671;292672 179687;179688;179689;179690;179691;179692 179689 6 NIVAAGLADR Unmodified 998.55089 0.55089316 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.151 22.418 2 3.785E-05 8015 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 141.48 101.38 5383600000 382640000 447840000 372670000 0 0 0 668740000 671290000 635170000 34587000 20015000 17847000 323820000 302200000 321750000 0 0 0 344350000 422670000 417970000 0 0 0 15571 388 15073 292673;292674;292675;292676;292677;292678;292679;292680;292681;292682;292683;292684;292685;292686;292687 179693;179694;179695;179696;179697;179698;179699;179700;179701;179702;179703;179704;179705 179693 6 NIVDAIDK Unmodified 886.476 0.47599688 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 24.055 23.173 2 0.0086781 10391 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 81.296 61.936 553130000 57357000 56957000 0 356000 0 0 0 69655000 66740000 0 0 0 44144000 43616000 43132000 0 0 0 54389000 61128000 55651000 0 0 0 15572 253 15074 292688;292689;292690;292691;292692;292693;292694;292695;292696;292697;292698 179706;179707;179708;179709;179710;179711;179712;179713;179714;179715 179706 10 NIVDGNHQMEPGMPESFNVLLK 2 Oxidation (M) 2500.1726 0.17264435 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 2 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 2 2 1 3 1 1 1 38.193 36.757 3 0.0027082 16050 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 56.529 53.767 204670000 0 0 0 793820 598830 0 0 0 0 12931000 14023000 15851000 0 0 0 44666000 3126800 45586000 0 0 0 29805000 33444000 3845200 15573 463 15075 292699;292700;292701;292702;292703;292704;292705;292706;292707;292708;292709;292710;292711;292712;292713;292714;292715;292716 179716;179717;179718;179719;179720;179721;179722;179723;179724;179725;179726 179720 274;275 11 NIVDGNHQMEPGMPESFNVLLK Oxidation (M) 2484.1777 0.17772973 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 3 2 1 1 1 5 7 8 2 3 2 11 9 11 2 2 2 10 9 9 42.802 41.462 2;3 6.1611E-22 17264 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 176.25 168.72 6157800000 7857600 9738300 12754000 4074100 0 0 5887900 4317700 5366000 211500000 487750000 437990000 10071000 12800000 11810000 1253000000 989360000 1010200000 8342100 9556500 6319800 592620000 525360000 541170000 15574 463 15075 292717;292718;292719;292720;292721;292722;292723;292724;292725;292726;292727;292728;292729;292730;292731;292732;292733;292734;292735;292736;292737;292738;292739;292740;292741;292742;292743;292744;292745;292746;292747;292748;292749;292750;292751;292752;292753;292754;292755;292756;292757;292758;292759;292760;292761;292762;292763;292764;292765;292766;292767;292768;292769;292770;292771;292772;292773;292774;292775;292776;292777;292778;292779;292780;292781;292782;292783;292784;292785;292786;292787;292788;292789;292790;292791;292792;292793;292794;292795;292796;292797;292798;292799;292800;292801;292802;292803;292804;292805;292806;292807;292808;292809;292810;292811;292812;292813;292814;292815;292816;292817;292818;292819 179727;179728;179729;179730;179731;179732;179733;179734;179735;179736;179737;179738;179739;179740;179741;179742;179743;179744;179745;179746;179747;179748;179749;179750;179751;179752;179753;179754;179755;179756;179757;179758;179759;179760;179761;179762;179763;179764;179765;179766;179767;179768;179769;179770;179771;179772;179773;179774;179775;179776;179777;179778;179779;179780;179781;179782;179783;179784;179785;179786;179787;179788;179789;179790;179791;179792;179793;179794;179795;179796;179797;179798;179799;179800;179801;179802;179803;179804;179805;179806;179807;179808;179809;179810;179811;179812;179813;179814;179815;179816;179817;179818;179819;179820;179821;179822 179772 274;275 96 NIVDGNHQMEPGMPESFNVLLK Unmodified 2468.1828 0.18281511 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 1 3 2 3 5 4 4 2 2 2 7 8 9 3 2 2 4 5 5 46.109 44.926 2;3;4 7.9226E-35 17827 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 279.44 272.56 52074000000 512270000 456870000 443800000 32373000 30635000 0 335010000 290770000 313120000 3633000000 3514300000 3129800000 374070000 372250000 399280000 11591000000 11228000000 1084600000 495400000 510500000 457280000 4294200000 4316300000 4259000000 15575 463 15075 292820;292821;292822;292823;292824;292825;292826;292827;292828;292829;292830;292831;292832;292833;292834;292835;292836;292837;292838;292839;292840;292841;292842;292843;292844;292845;292846;292847;292848;292849;292850;292851;292852;292853;292854;292855;292856;292857;292858;292859;292860;292861;292862;292863;292864;292865;292866;292867;292868;292869;292870;292871;292872;292873;292874;292875;292876;292877;292878;292879;292880;292881;292882;292883;292884;292885;292886;292887;292888;292889;292890;292891;292892;292893;292894;292895;292896;292897;292898;292899;292900;292901 179823;179824;179825;179826;179827;179828;179829;179830;179831;179832;179833;179834;179835;179836;179837;179838;179839;179840;179841;179842;179843;179844;179845;179846;179847;179848;179849;179850;179851;179852;179853;179854;179855;179856;179857;179858;179859;179860;179861;179862;179863;179864;179865;179866;179867;179868;179869;179870;179871;179872;179873;179874;179875;179876;179877;179878;179879;179880;179881;179882;179883;179884;179885;179886;179887;179888;179889;179890;179891;179892;179893;179894;179895;179896;179897;179898 179858 74 NIVDGNHQMEPGMPESFNVLLKEIR Unmodified 2866.4106 0.41058321 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By MS/MS 1 1 46.523 46.6 4 0.0033821 16810 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 48.867 48.147 10949000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3317400 7631700 0 0 0 0 0 0 0 15576 463 15076 292902;292903 179899 179899 1 NIVNDPSVVFDDIVTNEQIQK Unmodified 2386.2016 0.20161952 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 53.529 52.095 2;3 1.4381E-34 25802 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 216 213.34 966560000 64848000 65819000 65054000 0 0 0 89283000 78457000 87650000 0 0 0 70226000 84195000 80086000 0 0 0 96177000 98940000 81178000 0 0 4651500 15577 1759 15077 292904;292905;292906;292907;292908;292909;292910;292911;292912;292913;292914;292915;292916;292917;292918;292919;292920;292921;292922;292923;292924;292925;292926;292927;292928 179900;179901;179902;179903;179904;179905;179906;179907;179908;179909;179910;179911;179912;179913;179914;179915;179916;179917;179918;179919;179920;179921;179922;179923 179903 24 NIVPDYR Unmodified 875.45012 0.45011648 572 P0AA31 yedF UPF0033 protein YedF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.621 21.567 2 0.0026472 8431 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 111.28 93.512 693980000 48537000 41522000 38321000 0 841620 0 46452000 41322000 45415000 3148500 0 1519800 71589000 74167000 76273000 1471800 1135300 1018500 62898000 68658000 65771000 1527000 1251400 1142000 15578 572 15078 292929;292930;292931;292932;292933;292934;292935;292936;292937;292938;292939;292940;292941;292942;292943;292944;292945;292946;292947;292948;292949 179924;179925 179925 2 NIVSLNYAVR Unmodified 1147.635 0.63495714 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 32.265 30.87 2 0.00047012 13888 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 100.98 79.52 87139000 0 0 17688000 0 0 0 12044000 6952000 0 0 0 0 10314000 0 7938700 0 0 0 17867000 0 14336000 0 0 0 15579 1221 15079 292950;292951;292952;292953;292954;292955;292956;292957 179926;179927;179928;179929 179929 3 NIVTVGNDIETR Unmodified 1329.6888 0.6888432 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.063 24.913 2 1.1623E-11 11250 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 185.29 179.51 1000100000 111420000 108450000 102890000 1394900 1241800 1528700 0 77216000 84676000 0 0 0 79414000 78640000 84086000 0 0 0 83350000 93196000 92586000 0 0 0 15580 948 15080 292958;292959;292960;292961;292962;292963;292964;292965;292966;292967;292968;292969;292970;292971 179930;179931;179932;179933;179934;179935;179936 179934 7 NIVVILPSSGER Unmodified 1282.7245 0.72450043 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 2 2 1 2 2 1 2 2 4 4 1 1 1 2 2 2 2 1 1 35.734 34.146 2;3 7.974E-12 16603 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 190.88 150.88 12603000000 1462100000 1340200000 1169600000 13593000 14911000 13635000 998300000 951920000 896870000 8413200 5402500 9148000 776080000 755830000 780440000 3780800 2045800 2321900 1084800000 1080600000 1218500000 5597300 4926300 4266400 15581 666 15081 292972;292973;292974;292975;292976;292977;292978;292979;292980;292981;292982;292983;292984;292985;292986;292987;292988;292989;292990;292991;292992;292993;292994;292995;292996;292997;292998;292999;293000;293001;293002;293003;293004;293005;293006;293007;293008;293009;293010;293011;293012;293013;293014;293015;293016;293017;293018 179937;179938;179939;179940;179941;179942;179943;179944;179945;179946;179947;179948;179949;179950;179951;179952;179953;179954;179955;179956;179957;179958;179959;179960;179961;179962;179963;179964;179965;179966;179967;179968;179969;179970;179971;179972 179946 26 NIYDYYK Unmodified 977.44945 0.44944778 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 25.463 24.364 1;2 0.015557 11197 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.635 76.155 1484600000 244250000 242920000 214600000 0 0 0 193000000 184450000 170460000 0 0 0 30653000 30540000 31920000 0 0 0 47788000 44932000 49082000 0 0 0 15582 401 15082 293019;293020;293021;293022;293023;293024;293025;293026;293027;293028;293029;293030;293031;293032;293033;293034;293035;293036;293037;293038;293039;293040;293041 179973;179974;179975;179976;179977;179978;179979 179973 6 NIYTDPLNVLQAELLHR Unmodified 2008.0742 0.074174581 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 54.152 52.815 3 9.4773E-11 25774 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 141.97 141.79 2338600000 281450000 300590000 251950000 0 0 0 237250000 200040000 174860000 0 0 0 147480000 120090000 133470000 3705900 0 0 163150000 152670000 171900000 0 0 0 15583 43 15083 293042;293043;293044;293045;293046;293047;293048;293049;293050;293051;293052;293053;293054 179980;179981;179982;179983;179984;179985;179986;179987;179988 179985 9 NKAELDEYREELVSHFAR Unmodified 2205.0814 0.081444804 814 P0ADW3 yhcB Inner membrane protein YhcB yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 3 3 1 3 2 3 3 3 3 3 2 2 2 2 2 2 1 34.286 32.565 3;4;5 1.3268E-09 15823 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.72 114.61 892830000 18534000 22684000 15027000 10790000 16445000 20087000 8566200 150120000 7570600 63817000 56068000 40979000 78218000 71430000 67865000 0 0 0 67846000 69159000 54448000 21655000 16956000 14571000 15584 814 15084 293055;293056;293057;293058;293059;293060;293061;293062;293063;293064;293065;293066;293067;293068;293069;293070;293071;293072;293073;293074;293075;293076;293077;293078;293079;293080;293081;293082;293083;293084;293085;293086;293087;293088;293089;293090;293091;293092;293093;293094;293095;293096;293097;293098;293099 179989;179990;179991;179992;179993;179994;179995;179996;179997;179998;179999;180000;180001;180002;180003;180004 179995 16 NKDGIPAVVER Unmodified 1196.6513 0.65133548 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 16.795 17.266 2;3 0.00021542 5191 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 130.94 122.72 1789400000 216170000 232980000 238720000 11417000 15155000 16456000 32593000 30906000 34933000 46621000 42634000 19317000 114650000 103990000 85161000 36052000 30013000 30105000 155810000 72360000 166080000 20455000 17376000 19486000 15585 1620 15085 293100;293101;293102;293103;293104;293105;293106;293107;293108;293109;293110;293111;293112;293113;293114;293115;293116;293117;293118;293119;293120;293121;293122;293123;293124;293125;293126;293127;293128;293129;293130;293131;293132;293133;293134;293135;293136;293137;293138;293139;293140;293141;293142;293143 180005;180006;180007;180008;180009;180010;180011;180012;180013;180014;180015;180016;180017;180018;180019;180020;180021;180022;180023;180024;180025;180026;180027;180028;180029;180030;180031;180032;180033;180034;180035;180036;180037;180038;180039 180012 35 NKDQAMK Unmodified 833.40654 0.40653711 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 4.8835 5.7198 2 0.0032149 1140 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.5 108.95 184470000 18858000 27467000 19663000 0 0 0 0 0 0 0 0 0 16050000 17916000 21355000 0 0 0 22074000 21533000 19554000 0 0 0 15586 149 15086 293144;293145;293146;293147;293148;293149;293150;293151;293152 180040;180041;180042 180042 3 NKDTPVEQGKDDYLICMEK Unmodified 2282.0559 0.055883259 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 1 2 2 2 1 2 1 24.673 23.613 3;4 0.00052449 7657 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 65.47 64.109 138110000 15684000 14259000 15276000 8883800 7501000 11332000 0 4163800 0 3945300 4883100 4062600 2748100 0 0 0 0 0 10886000 10742000 9333000 2869500 8096400 3440400 15587 335 15087 293153;293154;293155;293156;293157;293158;293159;293160;293161;293162;293163;293164;293165;293166;293167;293168;293169;293170;293171;293172;293173;293174;293175;293176;293177;293178;293179;293180;293181;293182 180043;180044;180045;180046;180047;180048;180049 180046 7 NKEGALK Unmodified 758.42865 0.42865276 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 4.7533 5.6911 2 0.050051 1030 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 68.081 36.791 149050000 0 0 0 661840 732100 416970 16264000 14310000 14511000 0 0 0 18384000 21759000 15332000 0 0 0 15490000 15903000 15287000 0 0 0 15588 951 15088 293183;293184;293185;293186;293187;293188;293189;293190;293191;293192;293193;293194 180050;180051 180050 2 NKELMDNMR Unmodified 1149.5271 0.52706295 396 P0A850 tig Trigger factor yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 13.295 13.906 2;3 0.00010117 3511 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 146.81 143.24 784760000 39815000 41776000 38229000 11198000 10052000 11265000 46775000 53534000 49919000 24509000 21018000 22090000 53243000 49742000 49145000 18514000 8807600 12348000 66490000 58963000 68787000 11542000 7909700 9087400 15589 396 15089 293195;293196;293197;293198;293199;293200;293201;293202;293203;293204;293205;293206;293207;293208;293209;293210;293211;293212;293213;293214;293215;293216;293217;293218;293219;293220;293221;293222;293223;293224;293225;293226;293227;293228;293229;293230;293231;293232;293233;293234;293235;293236;293237;293238;293239;293240;293241;293242 180052;180053;180054;180055;180056;180057;180058;180059;180060;180061;180062;180063;180064;180065;180066 180052 12 NKFPAFTGELPNGDQYYGFPAENDALK Unmodified 3002.4087 0.40865218 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.356 45.967 3 2.3156E-06 21479 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 87.792 87.133 116050000 11439000 13811000 11576000 0 0 0 7787200 8710600 8964500 0 0 0 9827000 9859400 8122400 0 0 0 10028000 9135900 6785600 0 0 0 15590 1550 15090 293243;293244;293245;293246;293247;293248;293249;293250;293251;293252;293253;293254 180067;180068;180069 180068 3 NKLNDLEDALQQAK Unmodified 1598.8264 0.82639932 11 CON__P04264 yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 33.62 32.174 2;3 3.6364E-26 12397 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 276.95 273.46 712280000 0 0 0 0 0 3767800 0 0 0 182690000 157860000 150820000 0 0 0 12737000 11293000 13948000 0 0 0 61342000 60286000 57542000 + 15591 11 15091 293255;293256;293257;293258;293259;293260;293261;293262;293263;293264;293265;293266;293267;293268;293269;293270;293271;293272;293273;293274 180070;180071;180072;180073;180074;180075;180076;180077;180078;180079;180080;180081;180082;180083 180077 14 NKLNDLEDALQQAKEDLAR Unmodified 2183.1182 0.11822424 11 CON__P04264 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 3 1 2 1 1 1 1 45.57 43.963 3;4 2.6484E-23 17908 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 199.41 194.79 355670000 0 0 0 6600200 6277900 7170800 0 0 0 93734000 77021000 73322000 0 0 0 13213000 11614000 13880000 0 0 0 16256000 18448000 18135000 + 15592 11 15092 293275;293276;293277;293278;293279;293280;293281;293282;293283;293284;293285;293286;293287;293288;293289;293290;293291;293292;293293 180084;180085;180086;180087;180088;180089;180090;180091;180092;180093;180094;180095;180096;180097 180086 12 NKLNDLEEALQQAK Unmodified 1612.842 0.84204938 17 CON__P35908 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 35.99 33.917 2 3.5746E-14 13032 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 187.85 170.05 35813000 0 0 0 2350100 2894500 2151500 0 0 0 3495100 2544600 2133400 0 0 0 0 0 0 0 0 0 5501300 7166100 7576300 + 15593 17 15093 293294;293295;293296;293297;293298;293299;293300;293301;293302 180098;180099;180100;180101;180102 180101 5 NKLPPFIEIYR Unmodified 1388.7816 0.78162138 1229 P23908 argE Acetylornithine deacetylase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 37.864 35.921 3 0.012284 13940 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 56.359 52.055 10729000 0 0 0 625550 0 664490 4891500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1389600 1832200 1326000 15594 1229 15094 293303;293304;293305;293306;293307;293308 180103 180103 1 NKNESNITSTLNISQQTLK Unmodified 2132.1073 0.1073252 1657 P63204 gadE Transcriptional regulator GadE yes yes 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 27.118 26.501 3 7.5304E-07 8422 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 98.391 96.881 18636000 0 0 0 0 841260 0 0 0 0 0 0 4460800 0 0 0 5134900 3565500 4633900 0 0 0 0 0 0 15595 1657 15095 293309;293310;293311;293312;293313 180104 180104 1 NKPATLSTGLVIQVPEYLSPGEK Unmodified 2440.3213 0.32134072 266 P0A6N8 yeiP Elongation factor P-like protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 44.676 43.157 2;3 6.7258E-53 21539 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 254.02 250.94 2437200000 156270000 162600000 160770000 1509800 0 0 221420000 199510000 180890000 0 0 0 206200000 173000000 177740000 0 0 0 260930000 272430000 263960000 0 0 0 15596 266 15096 293314;293315;293316;293317;293318;293319;293320;293321;293322;293323;293324;293325;293326;293327;293328;293329;293330;293331;293332;293333;293334;293335;293336;293337;293338 180105;180106;180107;180108;180109;180110;180111;180112;180113;180114;180115;180116;180117;180118;180119;180120;180121;180122;180123;180124;180125 180106 21 NKPILVIK Unmodified 923.61679 0.61678788 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.305 17.109 2 0.027727 6073 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.176 32.082 67319000 11900000 18824000 15004000 0 0 0 2947700 2087700 0 0 0 0 2542900 3825700 2600900 0 0 0 0 2825700 4760300 0 0 0 15597 1878 15097 293339;293340;293341;293342;293343;293344;293345;293346;293347;293348 180126 180126 1 NKSEITDEEYK Unmodified 1354.6252 0.62523989 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 11.788 12.596 2 0.00011738 3455 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.97 108.15 73916000 9050900 10495000 11304000 0 0 0 11178000 0 0 0 0 0 8509600 0 8147800 0 0 0 6612700 0 8617800 0 0 0 15598 295 15098 293349;293350;293351;293352;293353;293354;293355;293356 180127;180128;180129;180130;180131 180127 4 NKSEITDEEYKEFYK Unmodified 1921.8945 0.89453846 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.227 21.454 3 4.6693E-07 8059 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 122.93 119.33 611380000 64468000 55665000 53978000 4063400 5088900 4778300 46786000 32053000 37885000 0 0 0 39722000 32262000 42139000 0 0 0 61742000 64857000 56815000 2946500 3070100 3062900 15599 295 15099 293357;293358;293359;293360;293361;293362;293363;293364;293365;293366;293367;293368;293369;293370;293371;293372;293373;293374;293375;293376 180132;180133;180134;180135;180136;180137;180138;180139;180140;180141;180142;180143;180144;180145;180146 180146 15 NKVHIINLEK Unmodified 1206.7085 0.70845643 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 14.528 14.899 2;3 3.005E-06 4052 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 172.59 151.72 326000000 0 0 0 24443000 17315000 20346000 0 0 0 31786000 21817000 37488000 0 0 0 28554000 31286000 24535000 0 0 0 30705000 30425000 27294000 15600 373 15100 293377;293378;293379;293380;293381;293382;293383;293384;293385;293386;293387;293388;293389;293390;293391;293392;293393;293394;293395;293396;293397;293398 180147;180148;180149;180150;180151;180152;180153;180154;180155;180156;180157;180158;180159;180160;180161;180162;180163;180164;180165;180166;180167 180155 21 NKVTDAEIAEVLAR Unmodified 1527.8257 0.82567103 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 33.642 31.622 3 0.0026578 10900 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 49.482 30.751 11814000 0 0 0 0 3269000 4690500 0 0 0 3854200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15601 1662 15101 293399;293400;293401 180168;180169 180168 2 NKYEDEINKR Unmodified 1307.647 0.64697839 11;14;8 CON__P04264;CON__H-INV:HIT000016045;CON__P48668;CON__P02538;CON__P04259;CON__Q8VED5;CON__P05787;CON__P13647 no no 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.633 12.052 2 0.00010085 2563 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 147.51 127.72 725240000 0 0 0 9783700 9474000 7902600 0 0 0 192930000 153430000 138710000 0 0 0 7787200 0 2210500 0 0 0 64333000 66041000 72647000 + 15602 11;8;14 15102 293402;293403;293404;293405;293406;293407;293408;293409;293410;293411;293412 180170;180171;180172;180173;180174;180175;180176 180173 7 NKYELSDNELAVFYSAADHR Unmodified 2341.0975 0.097488798 724 P0ACE3 hha Hemolysin expression-modulating protein Hha yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 2 1 1 2 1 2 2 1 1 2 2 2 1 1 2 2 1 2 38.825 37.255 3;4 7.0245E-15 14516 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 149.53 133.51 296880000 16353000 14936000 14444000 5452600 7962400 6022700 5699600 7452700 26957000 8351100 11995000 13466000 0 9482000 7956200 12857000 9564600 10560000 23789000 20928000 26879000 12772000 9383600 13617000 15603 724 15103 293413;293414;293415;293416;293417;293418;293419;293420;293421;293422;293423;293424;293425;293426;293427;293428;293429;293430;293431;293432;293433;293434;293435;293436;293437;293438;293439;293440;293441;293442;293443;293444;293445;293446;293447;293448 180177;180178;180179;180180;180181;180182;180183;180184;180185;180186;180187;180188;180189;180190;180191;180192;180193;180194;180195;180196;180197;180198;180199;180200 180189 24 NLADDFAFCSPDTR Unmodified 1627.6937 0.69367058 1656 P63201 gadW HTH-type transcriptional regulator GadW yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 42.735 40.151 2 0.00012907 16326 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 85.845 83.904 7950100 0 0 0 0 0 0 0 0 0 3471200 2632500 1846400 0 0 0 0 0 0 0 0 0 0 0 0 15604 1656 15104 293449;293450;293451 180201 180201 1 NLAEGVPR Unmodified 854.46102 0.46101552 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.906 16.4 2 0.0009293 5606 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.16 99.393 1957100000 144710000 131880000 121200000 32541000 24596000 24853000 173470000 187490000 179860000 88942000 91346000 109980000 117540000 109150000 0 16943000 14018000 13587000 201550000 0 0 59759000 56484000 57205000 15605 564 15105 293452;293453;293454;293455;293456;293457;293458;293459;293460;293461;293462;293463;293464;293465;293466;293467;293468;293469;293470;293471;293472 180202;180203;180204;180205;180206;180207;180208;180209;180210;180211;180212;180213;180214 180207 12 NLAELHIGQPVVHLEHGVGR Unmodified 2174.1709 0.17086893 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 28.304 27.707 5 0.0045413 8723 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 48.112 46.718 40963000 16051000 0 0 0 0 0 0 0 9169100 0 0 0 0 0 8368000 2637600 2649100 2087600 0 0 0 0 0 0 15606 1355 15106 293473;293474;293475;293476;293477;293478 180215;180216;180217;180218 180215 4 NLAELPASAAHSHQHVVK Unmodified 1907.9966 0.99659296 1407 P33030 yeiR Uncharacterized protein YeiR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.863 14.725 3 9.5797E-10 4657 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.502 97.502 164120000 16485000 6580400 11023000 218150 0 0 13905000 10711000 17529000 0 0 0 10938000 12175000 10912000 0 0 0 16564000 21814000 15268000 0 0 0 15607 1407 15107 293479;293480;293481;293482;293483;293484;293485;293486;293487;293488;293489;293490;293491 180219;180220;180221;180222;180223;180224;180225;180226;180227 180224 9 NLAEQLGMSITPVR Unmodified 1527.8079 0.80791248 1818 P76114 mcbR HTH-type transcriptional regulator McbR yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 44.298 42.893 2 0.00058767 21064 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.846 63.743 29967000 10863000 0 12670000 0 0 0 0 0 0 0 0 0 0 3021400 0 0 0 0 3412700 0 0 0 0 0 15608 1818 15108 293492;293493;293494;293495 180228 180228 1 NLAGETQLDQAVILIAACK Unmodified 2027.0721 0.072125671 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 52.955 51.564 3 0.0015937 20779 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 60.564 58.873 50263000 0 0 0 2460200 1970400 1917400 0 0 0 6994200 6741200 8447400 0 0 0 0 0 0 5686400 5488100 0 3104400 4382600 3070300 15609 1488 15109 293496;293497;293498;293499;293500;293501;293502;293503;293504;293505;293506 180229;180230 180230 1 NLALHVDGAR Unmodified 1064.5727 0.57269123 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.703 17.461 2;3 0.00019392 6207 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.87 74.992 956040000 68643000 83564000 53241000 0 0 0 123850000 119250000 114440000 0 0 0 60174000 60122000 49700000 0 0 0 73253000 82662000 67144000 0 0 0 15610 1778 15110 293507;293508;293509;293510;293511;293512;293513;293514;293515;293516;293517;293518;293519;293520;293521;293522;293523;293524;293525;293526;293527;293528;293529;293530 180231;180232;180233;180234;180235;180236;180237;180238;180239;180240;180241;180242;180243;180244;180245;180246;180247;180248;180249;180250 180240 17 NLALICESDLLGER Unmodified 1601.8083 0.80830641 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.67 45.574 2 0.0006164 21439 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 88.338 68.131 141520000 24472000 22349000 17541000 0 0 0 10035000 8382700 0 0 0 0 11923000 12110000 12224000 0 3614900 2385200 0 9026700 7461300 0 0 0 15611 1355 15111 293531;293532;293533;293534;293535;293536;293537;293538;293539;293540;293541;293542 180251;180252;180253;180254 180252 0 NLALLLDSVANDK Unmodified 1384.7562 0.75619449 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 49.306 47.921 2;3 6.7618E-08 23337 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.95 115.22 4278600000 448810000 466090000 490200000 3044300 1893300 1890000 470420000 466460000 432790000 2137100 2117100 3235600 265710000 262820000 234190000 0 0 0 228880000 242470000 255400000 0 0 0 15612 1109 15112 293543;293544;293545;293546;293547;293548;293549;293550;293551;293552;293553;293554;293555;293556;293557;293558;293559;293560;293561;293562;293563;293564;293565;293566;293567;293568;293569;293570;293571;293572 180255;180256;180257;180258;180259;180260;180261;180262;180263;180264;180265;180266;180267;180268;180269;180270;180271;180272;180273;180274 180259 14 NLALNIESR Unmodified 1028.5615 0.56145784 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.279 26.089 2 3.6846E-06 11621 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 175.44 126.88 10263000000 656440000 629870000 574700000 3265800 3429100 3487100 1001900000 915730000 878070000 3074600 2326900 1956000 898380000 807430000 819480000 2115700 1356200 1203400 1101800000 955040000 994670000 2959000 2309400 2155500 15613 24 15113 293573;293574;293575;293576;293577;293578;293579;293580;293581;293582;293583;293584;293585;293586;293587;293588;293589;293590;293591;293592;293593;293594;293595;293596 180275;180276;180277;180278;180279;180280;180281;180282;180283;180284;180285;180286;180287;180288;180289;180290 180285 16 NLAQCGIR Unmodified 930.47053 0.47053435 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.816 14.682 2 0.00062486 4742 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.05 121.72 680720000 91912000 80932000 74548000 0 0 0 64381000 58484000 56839000 0 0 0 36884000 44359000 41320000 0 0 0 45991000 40274000 44800000 0 0 0 15614 1244 15114 293597;293598;293599;293600;293601;293602;293603;293604;293605;293606;293607;293608 180291;180292;180293;180294;180295;180296;180297;180298;180299 180295 9 NLCPLIK Unmodified 856.48406 0.48405915 1534 P39384 yjiM Uncharacterized protein YjiM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.645 23.529 2 0.0077747 10638 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.903 76.565 124570000 0 0 0 0 0 0 24693000 25435000 25639000 2499400 1304500 1516900 8341400 9785800 8714900 0 0 0 5101500 5893400 5645300 0 0 0 15615 1534 15115 293609;293610;293611;293612;293613;293614;293615;293616;293617;293618;293619;293620 180300;180301;180302 180301 3 NLDAGKAGVEVDDR Unmodified 1457.711 0.71103521 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 15.609 16.249 2;3 4.7715E-08 4052 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 150.21 142.65 78286000 0 0 0 19779000 23972000 22733000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3469200 2853700 5478500 15616 542 15116 293621;293622;293623;293624;293625;293626;293627;293628;293629;293630;293631 180303;180304;180305;180306;180307;180308 180308 6 NLDAGKAGVEVDDRGFIR Unmodified 1930.9861 0.98608786 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 26.148 24.896 3 1.6975E-06 8175 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 92.977 86.248 20684000 0 0 0 7463500 5629000 7591300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15617 542 15117 293632;293633;293634 180309;180310;180311 180311 3 NLDITDTR Unmodified 946.47197 0.47197413 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.261 19.735 2 2.2101E-06 7658 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 187.34 137.22 548400000 65212000 64516000 58710000 10905000 9898500 10057000 58898000 60088000 48231000 0 0 0 27673000 26251000 23713000 0 0 0 0 33381000 39958000 4335800 2879900 3688200 15618 235 15118 293635;293636;293637;293638;293639;293640;293641;293642;293643;293644;293645;293646;293647;293648;293649;293650;293651 180312;180313;180314;180315;180316;180317;180318;180319;180320;180321;180322;180323;180324;180325;180326 180314 15 NLDLDSIIAEVK Unmodified 1328.7187 0.71874635 17;14;8 CON__P35908;CON__P48668;CON__P02538;CON__P04259;CON__Q8VED5;CON__P13647 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.195 52.156 2 2.1949E-06 20924 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 143.5 123.51 671800000 0 0 0 28518000 24204000 28154000 0 0 0 53460000 51416000 46802000 0 0 0 39779000 56055000 63117000 0 0 0 106980000 91098000 82213000 + 15619 17;8;14 15119 293652;293653;293654;293655;293656;293657;293658;293659;293660;293661;293662;293663 180327;180328;180329;180330;180331;180332;180333;180334;180335;180336;180337;180338 180331 12 NLDLHNVSTR Unmodified 1167.5996 0.59963426 323 P0A7A5 pcm Protein-L-isoaspartate O-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 2 1 1 2 2 1 1 1 1 2 2 16.283 17.104 2;3 0.00123 6018 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 92.051 74.656 104890000 5483200 0 11709000 403340 0 0 7884900 12397000 13707000 0 0 0 7982100 5717800 6573800 0 0 0 9580400 12600000 10849000 0 0 0 15620 323 15120 293664;293665;293666;293667;293668;293669;293670;293671;293672;293673;293674;293675;293676;293677;293678;293679;293680 180339;180340;180341 180340 2 NLDLICANDVSQPTQGFNSDNNALHLFWQDGDK Unmodified 3745.7067 0.70670147 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.231 51.791 3 1.0246E-18 24413 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 148.76 147.23 185680000 15925000 15441000 13569000 0 0 0 15059000 14129000 14422000 0 0 0 15676000 13910000 13954000 0 0 0 18412000 18942000 16240000 0 0 0 15621 670 15121 293681;293682;293683;293684;293685;293686;293687;293688;293689;293690;293691;293692 180342;180343;180344;180345 180345 4 NLDLIMGCER Unmodified 1219.5689 0.56892776 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.947 34.402 2 4.9691E-13 13746 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 223.08 220.07 1316900000 141020000 138270000 113270000 9417300 8075300 7454500 87936000 82592000 81352000 29376000 33778000 23625000 83376000 73537000 65437000 11411000 7857400 7346900 86387000 105190000 86714000 11080000 11003000 11354000 15622 899 15122 293693;293694;293695;293696;293697;293698;293699;293700;293701;293702;293703;293704;293705;293706;293707;293708;293709;293710;293711;293712;293713;293714;293715;293716 180346;180347;180348;180349;180350;180351;180352;180353;180354;180355;180356;180357;180358;180359;180360;180361;180362;180363;180364 180347 16 NLDNDDIEYK Unmodified 1237.5463 0.54626129 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.369 20.778 2 2.6293E-05 8033 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.69 142.77 2666500000 217740000 172360000 176830000 964280 744940 1051600 219350000 203540000 235340000 0 0 0 227740000 202540000 237520000 0 0 0 246680000 275800000 248320000 0 0 0 15623 1120 15123 293717;293718;293719;293720;293721;293722;293723;293724;293725;293726;293727;293728;293729;293730;293731 180365;180366;180367;180368;180369;180370;180371;180372;180373;180374;180375 180372 11 NLDQAQVILLGVSR Unmodified 1524.8624 0.86239089 414 P0A8A4 ppsR Phosphoenolpyruvate synthase regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 46.415 44.958 2;3 4.2808E-11 21823 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.95 128.79 328160000 53524000 48985000 46409000 604750 0 0 19569000 20250000 22155000 0 0 0 15443000 16278000 14308000 0 0 0 23132000 22990000 24513000 0 0 0 15624 414 15124 293732;293733;293734;293735;293736;293737;293738;293739;293740;293741;293742;293743;293744;293745;293746;293747;293748;293749;293750;293751;293752;293753;293754 180376;180377;180378;180379;180380;180381;180382;180383;180384;180385;180386;180387;180388;180389;180390;180391 180389 15 NLDVPVAR Unmodified 882.49232 0.49231565 1101 P15038 helD Helicase IV yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 22.028 21.823 2 0.16643 8953 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.426 29.871 24164000 8484800 6163300 4303200 0 0 0 2656300 0 0 757300 479860 0 1319300 0 0 0 0 0 0 0 0 0 0 0 15625 1101 15125 293755;293756;293757;293758;293759;293760;293761 180392 180392 0 NLELCFPEMSEQER Unmodified 1780.776 0.77602 749 P0ACV0 lpxL Lipid A biosynthesis lauroyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.688 43.026 2 2.9177E-05 20818 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 88.441 88.441 87791000 4133500 5846800 4217800 0 0 0 6962400 5999600 7342400 2366500 0 2571800 7057700 5698500 4794900 0 0 0 8593900 9260100 10664000 2281900 0 0 15626 749 15126 293762;293763;293764;293765;293766;293767;293768;293769;293770;293771;293772;293773;293774;293775;293776 180393;180394;180395;180396;180397 180396 1 NLESNYR Unmodified 894.41954 0.41954463 160 P07363 cheA Chemotaxis protein CheA yes yes 0 0 0 By MS/MS 1 12.046 13.05 2 0.15122 2816 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 44.531 24.049 3248400 0 0 0 3248400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15627 160 15127 293777 180398 180398 1 NLEVCPK Unmodified 858.42694 0.4269382 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.34 14.915 2 0.0081421 4100 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 89.123 75.137 2266500000 151740000 140870000 136430000 0 0 0 196060000 189210000 199410000 16626000 0 0 177300000 164850000 173230000 14813000 13147000 10974000 214210000 210250000 192860000 23085000 20518000 20934000 15628 547 15128 293778;293779;293780;293781;293782;293783;293784;293785;293786;293787;293788;293789;293790;293791;293792;293793;293794;293795;293796 180399;180400;180401;180402;180403;180404;180405;180406;180407;180408;180409;180410;180411;180412;180413;180414;180415;180416 180401 18 NLEVMVK Unmodified 831.45242 0.45242467 366 P0A7R9 rpsK 30S ribosomal protein S11 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.908 21.683 2 0.011869 6652 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 85.359 61.564 2765900000 782800000 678260000 643550000 0 16635000 19694000 169070000 182880000 0 50868000 46520000 30610000 1491600 0 1484800 24632000 19122000 19933000 3477300 0 0 15589000 26477000 32767000 15629 366 15129 293797;293798;293799;293800;293801;293802;293803;293804;293805;293806;293807;293808;293809;293810;293811;293812;293813;293814;293815 180417;180418;180419;180420;180421;180422;180423;180424;180425;180426;180427;180428;180429;180430 180417 14 NLFCSCVPISEYQ Unmodified 1615.7011 0.70106415 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.165 48.744 2 1.031E-05 23680 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.22 119.22 838700000 57644000 46880000 44525000 2772600 3303500 3463700 73940000 65395000 76856000 2754000 3150300 0 58779000 61768000 62367000 0 0 0 85971000 88452000 92897000 1536400 3111600 3137200 15630 1409 15130 293816;293817;293818;293819;293820;293821;293822;293823;293824;293825;293826;293827;293828;293829;293830;293831;293832;293833;293834;293835 180431;180432;180433;180434;180435;180436;180437;180438;180439;180440;180441;180442 180439 12 NLGFSHLEIINDFTAVSMAIPMLK Unmodified 2660.3706 0.37061588 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 55.352 53.909 3 6.9153E-07 26440 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 104.41 98.423 281290000 17529000 18978000 16739000 0 0 0 33943000 0 0 0 0 0 34920000 38007000 35934000 0 0 0 27344000 29183000 28710000 0 0 0 15631 285 15131 293836;293837;293838;293839;293840;293841;293842;293843;293844;293845 180443;180444;180445 180443 3 NLGIELTDDQLNITPPPDVNGLKK Unmodified 2603.3806 0.38064652 1174 P21179 katE Catalase HPII yes yes 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 45.945 44.478 3 0.051614 21688 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 36.576 34.068 45920000 15150000 11607000 11733000 0 0 0 0 7429100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15632 1174 15132 293846;293847;293848;293849 180446 180446 1 NLGLMAAER Unmodified 973.5015 0.50150012 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.798 23.724 2 0.00019484 10699 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.02 118.68 182860000 12209000 15435000 14389000 4452700 4401900 4842400 22797000 23818000 19491000 5891800 6244700 5888800 8949200 0 8979100 643400 0 0 11044000 0 8567900 1514800 1735200 1564400 15633 1765 15133 293850;293851;293852;293853;293854;293855;293856;293857;293858;293859;293860;293861;293862;293863;293864;293865;293866;293867;293868;293869 180447;180448;180449;180450;180451;180452;180453;180454;180455 180449 7 NLGQENFDAAEK Unmodified 1334.6103 0.61025853 1263 P25552 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.805 20.326 2 2.1335E-05 7864 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.6 90.53 131540000 16079000 13510000 13715000 0 0 0 9505000 0 9739300 0 0 0 8952200 9116100 8440500 0 0 0 15434000 13742000 13307000 0 0 0 15634 1263 15134 293870;293871;293872;293873;293874;293875;293876;293877;293878;293879;293880 180456;180457;180458;180459;180460;180461;180462;180463;180464;180465 180461 10 NLGVDVK Unmodified 743.41775 0.41775372 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 1 1 1 15.943 16.73 2 0.027079 6031 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.998 25.306 302790000 21002000 28246000 21841000 0 0 0 31729000 36458000 33306000 0 0 0 17067000 14349000 15762000 0 0 0 29482000 28030000 25513000 0 0 0 15635 1900 15135 293881;293882;293883;293884;293885;293886;293887;293888;293889;293890;293891;293892;293893;293894;293895;293896 180466;180467;180468;180469;180470;180471;180472;180473;180474;180475;180476;180477 180466 12 NLGVEEVVAK Unmodified 1056.5815 0.58152458 755 P0ACX3 ydhR Putative monooxygenase YdhR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.734 23.727 2 0.0042997 10441 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.016 53.178 402650000 67249000 59996000 57564000 492700 415410 559190 28537000 21359000 23187000 0 0 0 27997000 27592000 28534000 0 0 0 21349000 19336000 18480000 0 0 0 15636 755 15136 293897;293898;293899;293900;293901;293902;293903;293904;293905;293906;293907;293908;293909;293910;293911 180478;180479 180478 2 NLHDLLMAAPAGLR Unmodified 1490.8028 0.80276752 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.053 41.479 3 8.0872E-06 19465 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 99.669 91.328 322550000 37309000 0 36238000 994930 1049900 684980 39769000 40570000 37412000 0 0 0 29993000 25626000 32477000 0 0 0 0 0 40421000 0 0 0 15637 1586 15137 293912;293913;293914;293915;293916;293917;293918;293919;293920;293921;293922;293923;293924;293925;293926 180480;180481;180482;180483;180484;180485;180486;180487;180488;180489;180490;180491 180489 12 NLIAELLFK Unmodified 1059.6328 0.63283187 605 P0AAN9 iraP Anti-adapter protein IraP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.308 53.059 2 0.00061972 26223 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.57 103.14 1506600000 185850000 175380000 174020000 3913700 3796500 5082600 99082000 103220000 89309000 24158000 14664000 8410900 87593000 81847000 86185000 12273000 24930000 18907000 102610000 82832000 93382000 7586800 10884000 10691000 15638 605 15138 293927;293928;293929;293930;293931;293932;293933;293934;293935;293936;293937;293938;293939;293940;293941;293942;293943;293944;293945;293946;293947;293948;293949;293950 180492;180493;180494;180495;180496;180497;180498;180499;180500;180501;180502;180503;180504;180505;180506;180507;180508;180509;180510;180511;180512;180513;180514;180515 180500 24 NLIEGIAAAMHFR Unmodified 1441.75 0.75000367 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 50.953 49.736 2;3 1.9993E-17 24578 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 248.87 242.83 2531700000 186990000 218670000 189830000 627760 0 557860 373030000 367240000 259660000 0 0 0 193100000 172630000 180550000 1853800 0 0 117080000 129290000 140550000 0 0 0 15639 214 15139 293951;293952;293953;293954;293955;293956;293957;293958;293959;293960;293961;293962;293963;293964;293965;293966;293967;293968;293969;293970;293971;293972;293973;293974;293975;293976;293977 180516;180517;180518;180519;180520;180521;180522;180523;180524;180525;180526;180527;180528;180529;180530;180531;180532;180533;180534;180535;180536;180537 180519 22 NLIEWLPGSTIWAGKR Unmodified 1839.9996 0.99955308 77 P02943 lamB Maltoporin yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.469 48.415 3 0.0081208 18861 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 45.723 40.35 1458300000 381620000 315960000 0 0 0 0 204730000 178890000 217120000 0 0 1660900 0 0 0 3750300 3059900 3199200 53505000 50223000 44548000 0 0 0 15640 77 15140 293978;293979;293980;293981;293982;293983;293984;293985;293986;293987;293988;293989 180538;180539 180538 2 NLIPPTMWGYNDDVQDYTYDPEK Unmodified 2773.2218 0.22176261 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 2 1 1 53.04 51.635 2;3 1.288E-11 25311 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 183.76 181.69 383850000 128600000 122120000 117970000 0 0 0 0 0 0 0 0 0 1829600 0 0 0 0 0 7007000 2975900 3352000 0 0 0 15641 1219 15141 293990;293991;293992;293993;293994;293995;293996;293997;293998;293999;294000 180540;180541;180542;180543;180544;180545;180546;180547;180548;180549;180550;180551 180544 12 NLITHQFAGGTIGNTMHNYSVLADDR Unmodified 2844.3613 0.36132483 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 37.604 35.89 3 2.5126E-05 17393 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.216 76.567 142550000 0 14135000 16520000 0 0 0 11900000 10945000 11885000 0 0 0 11813000 10072000 0 0 0 0 22404000 16944000 15934000 0 0 0 15642 891 15142 294001;294002;294003;294004;294005;294006;294007;294008;294009;294010 180552;180553;180554 180552 3 NLKPEGIFLLHTIGSK Unmodified 1766.0091 0.0090551289 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 3 3 2 2 2 3 3 3 3 3 3 3 3 3 2 3 3 2 2 2 36.471 34.695 2;3;4 4.5969E-09 17108 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130.39 130.32 2180000000 106460000 112110000 80956000 4453000 5407300 4583300 450690000 441860000 476910000 49673000 42285000 46951000 53199000 59803000 48087000 0 0 0 58490000 59421000 63895000 4289500 6333500 4133000 15643 522 15143 294011;294012;294013;294014;294015;294016;294017;294018;294019;294020;294021;294022;294023;294024;294025;294026;294027;294028;294029;294030;294031;294032;294033;294034;294035;294036;294037;294038;294039;294040;294041;294042;294043;294044;294045;294046;294047;294048;294049;294050;294051;294052;294053;294054;294055;294056;294057;294058;294059;294060;294061;294062;294063;294064;294065;294066 180555;180556;180557;180558;180559;180560;180561;180562;180563;180564;180565;180566;180567;180568;180569;180570;180571;180572;180573;180574;180575;180576;180577;180578;180579 180559 25 NLKPSAR Unmodified 784.45554 0.45553621 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 5.6564 6.5339 2 0.0099019 1449 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 98.415 49.204 238310000 0 0 0 0 0 0 0 0 0 0 0 0 45883000 34125000 38574000 0 0 0 43846000 40018000 35868000 0 0 0 15644 1489 15144 294067;294068;294069;294070;294071;294072;294073;294074 180580;180581;180582;180583 180580 4 NLLAQPAAGTTEAK Unmodified 1383.7358 0.73579339 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.547 20.966 2 3.8311E-11 8480 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.34 144.59 275040000 13994000 14040000 10640000 0 0 0 27201000 30914000 30492000 0 0 0 22511000 18102000 21700000 0 0 0 23726000 34350000 27368000 0 0 0 15645 201 15145 294075;294076;294077;294078;294079;294080;294081;294082;294083;294084;294085;294086 180584;180585;180586;180587;180588;180589;180590;180591;180592;180593;180594;180595 180585 12 NLLAQPAAGTTEAKPAPAPQADTPAAAPQGE Unmodified 2953.4781 0.47812873 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.043 29.442 3 0.050988 11391 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 36.767 34.245 120410000 0 2561800 5201300 4246800 5028500 4822400 7058300 0 0 11634000 10590000 9770000 5666700 7025600 4978400 0 0 0 6747900 13989000 8441800 3809600 3329900 5506000 15646 201 15146 294087;294088;294089;294090;294091;294092;294093;294094;294095;294096;294097;294098;294099;294100;294101;294102;294103;294104 180596;180597;180598;180599;180600 180596 5 NLLDTAVLEGTDEESAR Unmodified 1831.88 0.87995103 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 1 2 42.883 41.482 2;3 9.4385E-50 19258 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 276.97 265.44 666340000 0 0 0 821180 0 1015800 7620900 11300000 5236900 3617600 3954600 0 148690000 138800000 149850000 24748000 21658000 21728000 35007000 36774000 35382000 6792000 5405200 7937200 15647 647 15147 294105;294106;294107;294108;294109;294110;294111;294112;294113;294114;294115;294116;294117;294118;294119;294120;294121;294122;294123;294124;294125;294126;294127;294128;294129;294130;294131;294132;294133;294134;294135 180601;180602;180603;180604;180605;180606;180607;180608;180609;180610;180611;180612;180613;180614;180615;180616 180615 16 NLLEITYGK Unmodified 1049.5757 0.57571092 1657 P63204 gadE Transcriptional regulator GadE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 34.793 33.456 2 0.10117 11975 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 48.794 40.854 32686000 0 2631900 0 0 0 0 0 0 2317300 5588100 4248900 5544700 0 0 0 4392500 4177200 3785700 0 0 0 0 0 0 15648 1657 15148 294136;294137;294138;294139;294140;294141;294142;294143 180617 180617 0 NLLGITTSVHCVAGVVDYVVK Unmodified 2243.1984 0.19838882 1543 P39829 garD D-galactarate dehydratase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.565 49.141 3 3.129E-10 23955 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 115.46 109.88 158390000 11536000 11562000 15056000 0 0 0 17502000 11250000 15803000 0 0 0 13104000 12694000 15019000 0 0 0 8980100 13664000 12223000 0 0 0 15649 1543 15149 294144;294145;294146;294147;294148;294149;294150;294151;294152;294153;294154;294155 180618;180619;180620;180621 180618 4 NLLGLMQGTLQEK Unmodified 1443.7755 0.77554972 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 1 2 47.31 45.965 2;3 2.5219E-12 22225 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 188.49 151.14 1167800000 243970000 221690000 196620000 0 0 0 52661000 57353000 54427000 0 0 0 47490000 43953000 41563000 0 0 0 66080000 70727000 71275000 0 0 0 15650 1465 15150 294156;294157;294158;294159;294160;294161;294162;294163;294164;294165;294166;294167;294168;294169;294170;294171;294172;294173;294174 180622;180623;180624;180625;180626;180627;180628;180629;180630;180631;180632;180633 180630 12 NLLGSGDR Unmodified 830.42463 0.42463001 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 14.968 15.841 2 0.0039159 5334 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.123 50.305 101530000 0 18990000 16493000 250200 0 0 0 0 0 0 0 0 15917000 16086000 0 0 0 0 0 16906000 16888000 0 0 0 15651 345 15151 294175;294176;294177;294178;294179;294180;294181;294182 180634;180635 180635 2 NLLPAAFAK Unmodified 943.5491 0.54910224 1660 P63235 gadC Probable glutamate/gamma-aminobutyrate antiporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.042 33.218 2 0.0028277 15711 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83.753 61.261 1524900000 55480000 60684000 52281000 19361000 21562000 23485000 306070000 316870000 333140000 174460000 160800000 741970 0 0 0 0 0 0 0 0 0 0 0 0 15652 1660 15152 294183;294184;294185;294186;294187;294188;294189;294190;294191;294192;294193;294194 180636;180637;180638;180639;180640;180641;180642;180643;180644;180645;180646 180645 11 NLLQLLR Unmodified 868.54944 0.54943659 1982 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 2 2 1 1 1 2 2 2 2 2 1 1 1 1 1 1 37.958 36.028 2 0.0019075 17960 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.68 0 184810000 14874000 38537000 31352000 1548000 1697800 1548200 16015000 19045000 17580000 6231400 6104600 1583500 3654500 0 3831900 0 0 0 6601300 7707800 6902500 0 0 0 + 15653 1982 15153 294195;294196;294197;294198;294199;294200;294201;294202;294203;294204;294205;294206;294207;294208;294209;294210;294211;294212;294213;294214;294215;294216;294217;294218 180647;180648;180649;180650;180651;180652;180653 180649 7 NLLTLLNLEK Unmodified 1169.702 0.70197407 1017 P0AGG2 tesB Acyl-CoA thioesterase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.063 50.911 2 2.558E-12 24792 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 243.03 209.76 527900000 61654000 56333000 58151000 0 0 1066500 43383000 43367000 45776000 0 0 0 32077000 35032000 31597000 0 676880 0 38336000 36043000 44409000 0 0 0 15654 1017 15154 294219;294220;294221;294222;294223;294224;294225;294226;294227;294228;294229;294230;294231;294232 180654;180655;180656;180657;180658;180659;180660;180661;180662;180663;180664;180665 180658 12 NLMPLLGMGGETEK Unmodified 1488.7316 0.73163599 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 44.873 43.42 2 1.1333E-05 17202 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 106.01 103.61 65924000 4497900 0 4955900 0 0 0 0 0 0 0 0 0 4625400 3360700 0 0 0 0 7304300 0 6595900 34584000 0 0 15655 1448 15155 294233;294234;294235;294236;294237;294238;294239;294240 180666;180667 180666 2 NLMSDGNVQIVK Unmodified 1316.6758 0.67583567 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 29.372 28.194 2 2.6019E-06 12532 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 140.83 68.35 729740000 36763000 30770000 31285000 2683700 1381500 1291300 76393000 91463000 80247000 8690400 9953800 8469700 45570000 47095000 42919000 13442000 7319000 12025000 51997000 62296000 58623000 0 4934600 4130600 15656 1916 15156 294241;294242;294243;294244;294245;294246;294247;294248;294249;294250;294251;294252;294253;294254;294255;294256;294257;294258;294259;294260;294261;294262;294263;294264;294265 180668;180669;180670;180671;180672;180673;180674;180675;180676;180677;180678;180679;180680;180681;180682;180683 180681 16 NLMTSYDTLTK Unmodified 1285.6224 0.62240312 1179 P21367 ycaC Uncharacterized protein YcaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.906 31.294 2 5.865E-07 14207 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 123.88 113.65 2431800000 604330000 527330000 519750000 1289300 1205500 0 148520000 142520000 151790000 10345000 10615000 8597800 52227000 0 48983000 0 0 0 70390000 66889000 64425000 0 2610500 0 15657 1179 15157 294266;294267;294268;294269;294270;294271;294272;294273;294274;294275;294276;294277;294278;294279;294280;294281;294282;294283 180684;180685;180686;180687;180688;180689;180690;180691;180692;180693;180694;180695;180696 180695 13 NLNFYYGK Unmodified 1017.492 0.4919813 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.722 27.419 2 0.0026001 12961 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.139 91.468 2070000000 6750300 5604800 4083800 2038800 2590200 2317800 142370000 148790000 142560000 116340000 91783000 84688000 127120000 124930000 143800000 35160000 20002000 24592000 216940000 257270000 189310000 63925000 59180000 57846000 15658 594 15158 294284;294285;294286;294287;294288;294289;294290;294291;294292;294293;294294;294295;294296;294297;294298;294299;294300;294301;294302;294303;294304;294305;294306;294307 180697;180698;180699;180700;180701;180702;180703;180704;180705;180706;180707;180708;180709;180710;180711;180712 180701 15 NLNLDLQTLTEEAVR Unmodified 1727.9054 0.90537792 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 51.669 50.467 2;3 1.3716E-45 24460 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 343.81 304.18 2194400000 197000000 173450000 200280000 7510800 7622200 6507100 189340000 205420000 152890000 12436000 12056000 13948000 153900000 135870000 147760000 4444500 5868000 4493700 189660000 175520000 181110000 5385500 5532000 6461800 15659 62 15159 294308;294309;294310;294311;294312;294313;294314;294315;294316;294317;294318;294319;294320;294321;294322;294323;294324;294325;294326;294327;294328;294329;294330;294331;294332;294333;294334;294335;294336;294337;294338;294339;294340;294341;294342;294343;294344;294345;294346;294347;294348 180713;180714;180715;180716;180717;180718;180719;180720;180721;180722;180723;180724;180725;180726;180727;180728;180729;180730;180731;180732;180733;180734;180735;180736;180737;180738;180739;180740;180741;180742;180743 180736 30 NLNMNFELSDEMK Unmodified 1583.696 0.69597877 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 42.081 40.423 2 3.9666E-06 19836 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 129.89 129.89 172290000 54112000 44697000 43778000 0 0 0 0 6770900 1533400 0 0 0 7856700 7374600 6167800 0 0 0 0 0 0 0 0 0 15660 1501 15160 294349;294350;294351;294352;294353;294354;294355;294356 180744;180745;180746;180747;180748;180749;180750 180745 3 NLPGDLAIQGR Unmodified 1152.6251 0.62512073 464 P0A8V6 fadR Fatty acid metabolism regulator protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1 1 1 1 1 1 1 29.504 28.248 2 0.0071476 13301 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 64.711 49.451 218170000 15120000 13945000 12513000 0 0 0 14964000 18135000 14619000 0 0 0 14191000 18071000 14850000 0 0 0 25902000 27315000 28548000 0 0 0 15661 464 15161 294357;294358;294359;294360;294361;294362;294363;294364;294365;294366;294367;294368;294369 180751;180752;180753 180751 2 NLPIETNIMDLEAAK Unmodified 1670.8549 0.85492225 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 2 2 1 1 1 2 2 2 2 2 2 1 1 1 48.676 47.305 2;3 0.0001523 22083 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 56.514 52.412 1805200000 137310000 138270000 141630000 2472200 3858900 3500700 138820000 129660000 130210000 8065700 5183200 3115700 162810000 132690000 132470000 0 0 0 176650000 176810000 171490000 3676500 3968800 2531000 15662 59 15162 294370;294371;294372;294373;294374;294375;294376;294377;294378;294379;294380;294381;294382;294383;294384;294385;294386;294387;294388;294389;294390;294391;294392;294393;294394;294395;294396;294397;294398;294399;294400;294401 180754;180755;180756;180757;180758;180759;180760;180761;180762;180763;180764;180765 180763 1 NLPQLGIANLR Unmodified 1207.7037 0.70370541 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.909 38.276 2 1.9644E-05 15326 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 136.75 134.59 199810000 0 0 5342200 933550 1819800 1079400 16733000 16727000 13689000 17418000 12451000 10492000 8542600 7724100 8884800 4168000 2764500 4489700 17803000 20485000 17555000 4082400 3041800 3587800 15663 143 15163 294402;294403;294404;294405;294406;294407;294408;294409;294410;294411;294412;294413;294414;294415;294416;294417;294418;294419;294420;294421;294422;294423 180766;180767;180768;180769;180770;180771;180772;180773;180774;180775;180776;180777;180778;180779;180780 180770 15 NLPTAQGYCDSK Unmodified 1352.6031 0.60306466 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.213 17.754 2 1.831E-06 6416 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.89 144.48 274190000 26892000 23515000 17310000 917680 918070 789420 24283000 18719000 20985000 1605800 1222200 1290200 20372000 17521000 18311000 0 0 0 25883000 24037000 22707000 2347200 2293100 2273100 15664 491 15164 294424;294425;294426;294427;294428;294429;294430;294431;294432;294433;294434;294435;294436;294437;294438;294439;294440;294441;294442;294443;294444 180781;180782;180783;180784;180785;180786;180787;180788;180789;180790;180791 180789 11 NLPVPTNLNLIHLKPLR Unmodified 1951.1731 0.17310076 136 P06974 fliM Flagellar motor switch protein FliM yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 41.687 40.057 4 1.1722E-06 19385 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.631 97.631 37170000 9646400 12188000 8461300 2416400 2559600 1898000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15665 136 15165 294445;294446;294447;294448;294449;294450 180792 180792 1 NLPWTLK Unmodified 870.49634 0.49633839 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.674 34.117 2 0.011149 16418 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 86.086 77.314 756530000 44442000 42810000 37755000 0 0 0 90043000 91896000 87104000 0 0 0 53955000 50062000 47128000 0 0 0 68174000 73674000 69492000 0 0 0 15666 1510 15166 294451;294452;294453;294454;294455;294456;294457;294458;294459;294460;294461;294462 180793;180794;180795;180796;180797;180798;180799;180800;180801;180802;180803;180804 180796 12 NLQDSLR Unmodified 844.44028 0.44028008 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 16.751 17.189 2 0.0051746 6014 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 100.74 84.588 154320000 0 0 0 8061400 8824900 0 31165000 27401000 29061000 7336300 0 0 0 0 0 4516400 3371700 3794500 0 30787000 0 0 0 0 15667 1854 15167 294463;294464;294465;294466;294467;294468;294469;294470;294471;294472 180805;180806;180807 180807 3 NLQEEDIK Unmodified 987.48729 0.48728985 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.668 14.496 2 0.0010158 4626 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.5 96.403 1278500000 182450000 165160000 158880000 0 1493900 0 118830000 114950000 106710000 0 2745000 0 65718000 72162000 61727000 0 0 0 75614000 74254000 77772000 0 0 0 15668 43 15168 294473;294474;294475;294476;294477;294478;294479;294480;294481;294482;294483;294484;294485;294486 180808;180809;180810;180811;180812;180813;180814;180815;180816;180817;180818 180808 11 NLQQSAPINFSLVAVNLDQK Unmodified 2198.1695 0.16953153 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 51.912 50.662 2;3 7.7487E-30 24669 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 211.45 199.65 315200000 23196000 20361000 15156000 458690 814880 0 22351000 23855000 21699000 0 0 0 24070000 26504000 22119000 0 0 0 36360000 36952000 41303000 0 0 0 15669 1812 15169 294487;294488;294489;294490;294491;294492;294493;294494;294495;294496;294497;294498;294499;294500;294501;294502;294503;294504;294505;294506;294507;294508;294509;294510;294511;294512 180819;180820;180821;180822;180823;180824;180825;180826 180821 8 NLQTTLDSMNK Unmodified 1263.6129 0.61290107 1563 P43671 pqiB Paraquat-inducible protein B yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 27.388 25.952 2 0.00063306 11775 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.624 70.659 71788000 2765400 0 2603100 0 0 0 4963900 0 7146400 1869800 1811700 1889900 3728900 0 0 0 0 0 30246000 6237200 5973100 1401400 1151400 0 15670 1563 15170 294513;294514;294515;294516;294517;294518;294519;294520;294521;294522;294523;294524;294525 180827;180828;180829 180829 2 NLRPHWER Unmodified 1106.5734 0.57335993 1090 P13458 sbcC Nuclease SbcCD subunit C yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 12.392 12.889 3 0.071682 3002 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 46.462 29.686 31481000 0 4474800 4390700 0 0 0 0 0 0 0 0 8981500 0 0 0 0 0 0 0 0 3814300 3135000 3008000 3676500 15671 1090 15171 294526;294527;294528;294529;294530;294531;294532 180830 180830 1 NLSDGEVR Unmodified 888.43011 0.43010932 966 P0AFW4 rnk Regulator of nucleoside diphosphate kinase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 12.321 13.226 2 0.16643 3854 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 46.426 41.339 398620000 0 0 0 0 0 0 0 62147000 64886000 0 0 0 60496000 59259000 49379000 0 0 0 52448000 50007000 0 0 0 0 15672 966 15172 294533;294534;294535;294536;294537;294538;294539 180831;180832 180831 0 NLSEMQFYVTQNHGTEPPFTGR Unmodified 2552.1754 0.17542154 310 P0A746 msrB Peptide methionine sulfoxide reductase MsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 1 1 2 2 2 1 2 2 2 1 1 1 39.739 38.071 2;3 4.5813E-75 18466 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 373.71 367.55 1459800000 188030000 172640000 183910000 3767000 4794100 4543000 69694000 60104000 63538000 0 2644800 0 108320000 86319000 102200000 0 0 1996400 144480000 131460000 116100000 5062300 5525000 4676700 15673 310 15173 294540;294541;294542;294543;294544;294545;294546;294547;294548;294549;294550;294551;294552;294553;294554;294555;294556;294557;294558;294559;294560;294561;294562;294563;294564;294565;294566;294567;294568;294569;294570 180833;180834;180835;180836;180837;180838;180839;180840;180841;180842;180843;180844;180845;180846;180847;180848;180849;180850;180851;180852;180853;180854 180849 22 NLSESNDYVPR Unmodified 1292.5997 0.59969384 434 P0A8I5 trmB tRNA (guanine-N(7)-)-methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.324 20.738 2 1.7583E-05 8339 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.98 136.58 334070000 31070000 29010000 27056000 0 0 0 19175000 22647000 22019000 0 0 0 23900000 22676000 22697000 0 0 0 40181000 37850000 35789000 0 0 0 15674 434 15174 294571;294572;294573;294574;294575;294576;294577;294578;294579;294580;294581;294582 180855;180856;180857;180858;180859;180860;180861;180862;180863;180864 180856 8 NLSETTK Unmodified 791.4025 0.40249759 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 2 1 1 1 1 1 10.218 11.018 2 0.004947 2365 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.69 66.799 216350000 7993000 6223400 6024900 0 0 0 33469000 29155000 17915000 0 0 0 49624000 34080000 28863000 0 0 0 3004500 0 0 0 0 0 15675 1124 15175 294583;294584;294585;294586;294587;294588;294589;294590;294591;294592;294593;294594 180865;180866;180867;180868;180869;180870 180868 4 NLSHNYSLLAR Unmodified 1286.6731 0.67313356 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 1 2 2 1 1 2 2 2 20.628 21.072 2;3 6.0474E-05 8363 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 127.4 119.24 119500000 10668000 12560000 11700000 0 0 0 0 4976100 10541000 0 0 0 8233100 1950400 4868000 0 0 0 17511000 19937000 16558000 0 0 0 15676 691 15176 294595;294596;294597;294598;294599;294600;294601;294602;294603;294604;294605;294606;294607;294608;294609;294610;294611;294612;294613 180871;180872;180873;180874;180875;180876 180873 4 NLSLESAIDKESDLLEPLR Unmodified 2141.1216 0.12157828 410 P0A894 rapZ RNase adapter protein RapZ yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 49.772 48.398 3 0.022441 23864 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 45.347 42.661 165350000 32544000 29493000 0 913110 1294600 915030 0 14484000 15578000 0 0 0 15336000 10656000 9381800 0 0 0 14931000 8687300 11138000 0 0 0 15677 410 15177 294614;294615;294616;294617;294618;294619;294620;294621;294622;294623;294624;294625;294626 180877 180877 0 NLSLLQAR Unmodified 913.53451 0.53451481 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.603 26.421 2 0.00081197 10192 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 122.13 95.244 181020000 7575600 9307400 0 0 0 0 8560100 8661700 8979900 7706100 7255000 8430900 13861000 10699000 11382000 6108100 3929800 5335500 15269000 14863000 12765000 7484700 6886500 5963800 15678 73 15178 294627;294628;294629;294630;294631;294632;294633;294634;294635;294636;294637;294638;294639;294640;294641;294642;294643;294644;294645;294646 180878;180879;180880;180881;180882;180883;180884;180885 180881 8 NLSNFASLGSECTVDR Unmodified 1768.805 0.80501195 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.229 33.74 2 5.3351E-89 16172 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 353.2 353.2 1149200000 95636000 80640000 72448000 1410700 1815400 1004400 142600000 138120000 135590000 0 0 0 74330000 80867000 75059000 0 0 0 81844000 85687000 82179000 0 0 0 15679 681 15179 294647;294648;294649;294650;294651;294652;294653;294654;294655;294656;294657;294658;294659;294660;294661 180886;180887;180888;180889;180890;180891;180892;180893;180894;180895;180896;180897 180892 12 NLSYVLAEK Unmodified 1035.5601 0.56006086 1370 P31475 yieP Uncharacterized HTH-type transcriptional regulator YieP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.262 25.971 2 0.0037605 11797 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.438 71.666 311230000 28109000 27971000 23231000 0 516720 0 22795000 25721000 25435000 1386700 0 0 28407000 22462000 26106000 0 0 0 25557000 27754000 24532000 641590 604160 0 15680 1370 15180 294662;294663;294664;294665;294666;294667;294668;294669;294670;294671;294672;294673;294674;294675;294676;294677 180898;180899;180900;180901;180902;180903;180904;180905;180906;180907 180902 10 NLTCVFVDNGLLR Unmodified 1519.7817 0.78169773 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 47.508 46.083 2;3 2.9223E-12 22785 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 221.52 181.17 2297400000 194440000 173120000 155990000 3373400 2015700 1767400 167680000 162150000 135950000 0 0 0 223730000 200930000 200040000 0 0 0 234140000 222860000 213570000 2031100 2373300 1277700 15681 86 15181 294678;294679;294680;294681;294682;294683;294684;294685;294686;294687;294688;294689;294690;294691;294692;294693;294694;294695;294696;294697;294698;294699;294700;294701;294702;294703;294704;294705;294706;294707 180908;180909;180910;180911;180912;180913;180914;180915;180916;180917;180918;180919;180920;180921;180922;180923;180924;180925;180926;180927;180928;180929;180930;180931 180912 24 NLTDYGAFVDLGGVDGLLHITDMAWK Unmodified 2820.3793 0.37926631 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 2 2 2 2 4 3 2 2 2 4 3 3 2 1 2 4 3 3 2 2 2 55.859 54.535 2;3 2.3707E-50 27023 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 300.28 283.2 7691900000 1007400000 882740000 820980000 44117000 43814000 48707000 366710000 328170000 371740000 90381000 77163000 93987000 489810000 464930000 387130000 124230000 159720000 204570000 583220000 474870000 461980000 58996000 52728000 53837000 15682 990 15182 294708;294709;294710;294711;294712;294713;294714;294715;294716;294717;294718;294719;294720;294721;294722;294723;294724;294725;294726;294727;294728;294729;294730;294731;294732;294733;294734;294735;294736;294737;294738;294739;294740;294741;294742;294743;294744;294745;294746;294747;294748;294749;294750;294751;294752;294753;294754;294755;294756;294757;294758;294759;294760;294761;294762;294763;294764;294765;294766;294767;294768;294769;294770 180932;180933;180934;180935;180936;180937;180938;180939;180940;180941;180942;180943;180944;180945;180946;180947;180948;180949;180950;180951;180952;180953;180954;180955;180956;180957;180958;180959;180960;180961;180962;180963;180964;180965;180966 180938 34 NLTDYGAFVDLGGVDGLLHITDMAWKR Unmodified 2976.4804 0.48037734 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 54.938 53.538 4 9.9701E-11 19666 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 114.91 114.59 83430000 0 0 0 11040000 14898000 13648000 0 0 0 6535800 10477000 0 0 0 0 0 0 0 0 0 0 0 11637000 15195000 15683 990 15183 294771;294772;294773;294774;294775;294776;294777 180967 180967 1 NLTLVAGINWPSR Unmodified 1439.7885 0.78849767 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 3 3 3 2 2 1 1 1 1 1 1 48.475 47.127 2;3 1.7325E-32 23026 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 252.3 238.95 57673000 11163000 8839500 10119000 0 0 0 6208900 5339100 5322500 0 0 0 0 2006700 2022800 0 0 0 2216800 2584400 1849700 0 0 0 15684 703 15184 294778;294779;294780;294781;294782;294783;294784;294785;294786;294787;294788;294789;294790;294791;294792;294793;294794;294795;294796 180968;180969;180970;180971;180972;180973;180974;180975;180976;180977;180978;180979;180980 180980 13 NLTSQMVEYGQVK Unmodified 1495.7341 0.73407884 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 30.371 28.936 2;3 2.2153E-12 13772 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 239.36 234.91 2621000000 164770000 163620000 136030000 14837000 12642000 19350000 222540000 203930000 210770000 68950000 63438000 64649000 148690000 164020000 143860000 12700000 9168000 8054500 200520000 230010000 221820000 45109000 46602000 44889000 15685 1044 15185 294797;294798;294799;294800;294801;294802;294803;294804;294805;294806;294807;294808;294809;294810;294811;294812;294813;294814;294815;294816;294817;294818;294819;294820;294821;294822;294823;294824;294825;294826;294827;294828;294829;294830;294831;294832;294833;294834;294835 180981;180982;180983;180984;180985;180986;180987;180988;180989;180990;180991;180992;180993;180994;180995;180996;180997;180998;180999;181000;181001;181002;181003;181004;181005;181006 180991 25 NLVEHCGIALDEVLR Unmodified 1736.888 0.88795372 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 1 1 1 2 1 37.995 36.332 2;3 1.5906E-08 17573 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.86 146 336940000 70056000 91164000 77734000 0 0 0 14310000 14407000 10391000 0 0 0 44237000 0 0 0 0 0 14637000 0 0 0 0 0 15686 904 15186 294836;294837;294838;294839;294840;294841;294842;294843;294844;294845;294846 181007;181008;181009;181010;181011;181012;181013 181011 7 NLVELVQK Unmodified 941.55458 0.55458155 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 2 1 1 24.918 23.816 2 0.014508 10860 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 71.715 55.571 55596000 2183700 0 1981500 738850 817320 787120 12396000 10737000 18596000 0 0 0 0 0 0 0 0 0 3783700 0 3574700 0 0 0 15687 162 15187 294847;294848;294849;294850;294851;294852;294853;294854;294855;294856;294857 181014;181015 181014 2 NLVLDIDYNDAVVVIHTSPGAAQLIAR Unmodified 2876.5396 0.53960677 231 P0A6D0 argR Arginine repressor yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 53.631 52.199 3 0.047677 25453 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 41.423 35.196 59235000 9528800 7689400 5654700 0 0 0 0 6154900 7369200 0 0 0 5719900 4391400 3440000 0 0 0 4604300 4682700 0 0 0 0 15688 231 15188 294858;294859;294860;294861;294862;294863;294864;294865;294866;294867 181016 181016 0 NLVLVHAAR Unmodified 991.5927 0.59269839 1322 P28861 fpr Ferredoxin--NADP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.107 16.923 2 0.0001854 5862 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 127.84 119.25 169330000 22258000 28925000 26161000 0 0 0 8972100 11164000 11401000 0 0 0 6323400 7115000 6770600 0 0 0 13387000 12592000 14265000 0 0 0 15689 1322 15189 294868;294869;294870;294871;294872;294873;294874;294875;294876;294877;294878;294879 181017;181018;181019;181020;181021;181022;181023;181024;181025;181026 181020 4 NLVMLFQPHR Unmodified 1253.6703 0.67029679 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.342 33.798 3 0.00018232 16752 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.52 104.08 210630000 17810000 20087000 16257000 0 0 0 19868000 16953000 16061000 0 0 1425300 13799000 10607000 12044000 0 0 0 22504000 24437000 18774000 0 0 0 15690 1145 15190 294880;294881;294882;294883;294884;294885;294886;294887;294888;294889;294890;294891;294892 181027;181028;181029;181030;181031;181032;181033;181034;181035;181036;181037 181027 11 NLVQQVAK Unmodified 898.52362 0.52361577 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 1 1 1 3 3 3 1 1 1 3 2 3 1 1 1 19.747 19.799 2 6.6301E-05 5761 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 167.82 84.537 13328000000 1529000000 1877700000 1844400000 16975000 11845000 11175000 999200000 1184500000 1149400000 15165000 12119000 11633000 531550000 502240000 434440000 3625500 2464900 4085500 1204800000 944650000 1010800000 9485000 7972900 8896200 15691 1642 15191 294893;294894;294895;294896;294897;294898;294899;294900;294901;294902;294903;294904;294905;294906;294907;294908;294909;294910;294911;294912;294913;294914;294915;294916;294917;294918;294919;294920;294921;294922;294923;294924;294925;294926;294927;294928;294929;294930;294931;294932;294933;294934 181038;181039;181040;181041;181042;181043;181044;181045;181046;181047;181048;181049;181050;181051;181052 181043 13 NLYDIWLK Unmodified 1063.5702 0.57023162 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.553 47.222 2 0.02379 23492 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.313 57.373 363950000 42111000 42564000 48011000 0 0 0 41772000 43745000 38546000 0 0 0 24580000 22182000 23977000 0 0 0 9979700 12566000 13917000 0 0 0 15692 427 15192 294935;294936;294937;294938;294939;294940;294941;294942;294943;294944;294945;294946 181053;181054;181055;181056 181053 4 NLYDLPPEEAK Unmodified 1287.6347 0.63468237 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS 1 31.808 29.904 2 0.073295 14455 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 51.927 41.403 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15693 508 15193 294947 181057 181057 1 NMAFDLGEK Unmodified 1023.4695 0.46953129 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 2 29.927 28.491 2 5.7115E-05 13051 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.19 138.84 716900000 204070000 179640000 173110000 0 445080 0 157500000 2132200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15694 886 15194 294948;294949;294950;294951;294952;294953;294954 181058;181059;181060;181061;181062 181062 5 NMAGSLVR Unmodified 846.43817 0.43817159 984 P0AG44 rplQ 50S ribosomal protein L17 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.773 17.28 2 6.927E-05 4805 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 167.24 152.22 4882300000 659240000 609560000 560320000 15718000 30085000 28418000 232830000 220770000 227320000 70170000 65778000 40141000 283950000 262650000 196320000 0 48325000 53488000 394190000 427830000 382440000 27332000 25890000 19493000 15695 984 15195 294955;294956;294957;294958;294959;294960;294961;294962;294963;294964;294965;294966;294967;294968;294969;294970;294971;294972;294973;294974;294975;294976;294977 181063;181064;181065;181066;181067;181068;181069;181070;181071;181072;181073;181074 181064 12 NMAQNDQQR Unmodified 1103.4778 0.47780457 605 P0AAN9 iraP Anti-adapter protein IraP yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.5295 6.4223 2 6.6406E-06 1285 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 171.38 171.38 323380000 42117000 35792000 37763000 1145900 0 2483300 22534000 19607000 22271000 0 0 0 24663000 23793000 25486000 0 0 0 25088000 21335000 19298000 0 0 0 15696 605 15196 294978;294979;294980;294981;294982;294983;294984;294985;294986;294987;294988;294989;294990;294991 181075;181076;181077;181078;181079 181076 5 NMATGASTCELAILLIDAR Unmodified 2019.0129 0.012896232 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.53 53.089 3 1.0417E-14 25246 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 153.68 148.78 256580000 21155000 17390000 15846000 1557300 0 0 20316000 19526000 20260000 0 0 1719500 20723000 19077000 18692000 0 0 0 35571000 29016000 15727000 0 0 0 15697 1218 15197 294992;294993;294994;294995;294996;294997;294998;294999;295000;295001;295002;295003;295004;295005 181080;181081;181082;181083 181083 3 NMEQIAEHPLEENLAALR Unmodified 2077.0262 0.026238111 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 39.945 38.152 2;3 1.4186E-37 19020 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 271.73 264 556270000 0 0 0 0 0 0 138720000 131690000 138440000 0 0 0 49658000 43625000 37201000 0 0 0 0 16948000 0 0 0 0 15698 1276 15198 295006;295007;295008;295009;295010;295011;295012;295013;295014;295015;295016;295017;295018 181084;181085;181086;181087;181088;181089;181090;181091;181092;181093 181085 10 NMFIRPSDEELAGFKPDFIVMNGAK Unmodified 2825.3881 0.38805686 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 47.979 46.578 3;4 2.2676E-22 22590 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 173.89 167.38 536070000 73499000 69877000 117700000 0 0 0 21389000 28145000 18643000 0 0 0 28196000 31466000 29995000 0 0 0 40424000 39562000 37175000 0 0 0 15699 1195 15199 295019;295020;295021;295022;295023;295024;295025;295026;295027;295028;295029;295030;295031 181094;181095;181096;181097;181098;181099;181100;181101;181102;181103;181104;181105 181102 12 NMGEQIDTR Unmodified 1062.4764 0.47640759 586 P0AAC4 ybhL Inner membrane protein YbhL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 13.758 14.329 2 0.00016784 3745 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 122.52 114.95 36848000 0 0 0 3366200 3533400 4178900 0 0 0 13261000 0 10202000 0 0 0 0 0 0 0 0 0 2306900 0 0 15700 586 15200 295032;295033;295034;295035;295036;295037;295038 181106;181107;181108;181109;181110 181107 5 NMGGDITVTSEQGK Unmodified 1435.6613 0.66130782 846 P0AEC3 arcB Aerobic respiration control sensor protein ArcB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 18.92 19.244 2 0.00030639 7333 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 79.659 74.457 13474000 0 0 0 0 1075400 977300 0 0 0 1615800 1662900 1329500 0 0 1443800 0 0 0 0 3124400 2245000 0 0 0 15701 846 15201 295039;295040;295041;295042;295043;295044;295045;295046 181111 181111 1 NMGGMASLMGK Unmodified 1095.4875 0.48750632 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.86 28.41 2 0.0022405 12616 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 72.643 70.665 271700000 13539000 19428000 12315000 4328500 3143300 2344700 12523000 12471000 11927000 15568000 15141000 17496000 15158000 13803000 12563000 4261700 0 0 20129000 19724000 19030000 8512700 8685300 9605300 15702 1009 15202 295047;295048;295049;295050;295051;295052;295053;295054;295055;295056;295057;295058;295059;295060;295061;295062;295063;295064;295065;295066;295067;295068 181112;181113;181114;181115;181116;181117;181118;181119;181120;181121;181122;181123;181124 181123 10 NMINVALNNGTLQHPVK Unmodified 1861.9833 0.98325108 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 31.146 29.758 2;3 1.6443E-39 14007 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 253.79 250.46 2729300000 444540000 365330000 346850000 14620000 14806000 15028000 76794000 74060000 74345000 66925000 40205000 35980000 112790000 137640000 104820000 45534000 38815000 44723000 191820000 194470000 176100000 34777000 39478000 38867000 15703 376 15203 295069;295070;295071;295072;295073;295074;295075;295076;295077;295078;295079;295080;295081;295082;295083;295084;295085;295086;295087;295088;295089;295090;295091;295092;295093;295094;295095;295096;295097;295098;295099;295100;295101;295102;295103;295104;295105;295106;295107;295108;295109;295110;295111;295112;295113;295114;295115 181125;181126;181127;181128;181129;181130;181131;181132;181133;181134;181135;181136;181137;181138;181139;181140;181141;181142;181143;181144;181145;181146;181147;181148;181149;181150;181151;181152;181153;181154;181155;181156;181157;181158;181159;181160;181161;181162;181163;181164;181165;181166 181156 41 NMITGAAQMDGAILVVAATDGPMPQTR Unmodified 2728.3346 0.33464108 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 4 3 3 2 4 8 6 5 4 5 5 4 3 1 55.261 53.813 2;3;4 4.3196E-107 26305 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 413.21 410.97 10540000000 137690000 744430000 729990000 273860000 153780000 83122000 384510000 961880000 913520000 0 0 0 1400100000 985850000 859830000 0 0 0 1034000000 1043900000 830630000 0 3102700 0 15704 1048 15204 295116;295117;295118;295119;295120;295121;295122;295123;295124;295125;295126;295127;295128;295129;295130;295131;295132;295133;295134;295135;295136;295137;295138;295139;295140;295141;295142;295143;295144;295145;295146;295147;295148;295149;295150;295151;295152;295153;295154;295155;295156;295157;295158;295159;295160;295161;295162;295163;295164;295165;295166;295167;295168;295169;295170;295171;295172;295173;295174;295175;295176;295177;295178 181167;181168;181169;181170;181171;181172;181173;181174;181175;181176;181177;181178;181179;181180;181181;181182;181183;181184;181185;181186;181187;181188;181189;181190;181191;181192;181193;181194;181195;181196;181197;181198;181199;181200;181201;181202;181203;181204;181205;181206;181207;181208;181209;181210;181211;181212;181213;181214;181215;181216;181217;181218;181219;181220;181221;181222;181223;181224;181225;181226;181227;181228;181229;181230;181231;181232;181233;181234;181235;181236;181237;181238;181239;181240;181241;181242;181243;181244;181245;181246;181247;181248;181249;181250;181251;181252;181253 181168 86 NMITGAAQMDGAILVVAATDGPMPQTR Oxidation (M) 2744.3296 0.3295557 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 1 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 4 1 1 2 3 1 2 3 3 2 2 1 52.16 50.853 3 1.6243E-22 24716 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 162.61 160.27 400470000 12039000 22334000 20447000 26102000 7825900 4720900 23188000 44176000 19573000 0 0 0 35077000 53253000 43622000 0 0 0 28536000 33923000 25657000 0 0 0 15705 1048 15204 295179;295180;295181;295182;295183;295184;295185;295186;295187;295188;295189;295190;295191;295192;295193;295194;295195;295196;295197;295198;295199;295200;295201;295202;295203;295204;295205;295206;295207;295208 181254;181255;181256;181257;181258;181259;181260;181261;181262;181263;181264;181265;181266 181256 473;474 12 NMLANLEQVNATYGPLLHPGK Unmodified 2279.1732 0.1732367 1734 P69451 fadD Long-chain-fatty-acid--CoA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 49.554 48.184 3 0.00013043 23544 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.952 65.713 134280000 28025000 20526000 25440000 626150 0 0 0 7011100 9572600 0 0 0 10144000 6991600 8772900 0 0 0 7872600 0 9299700 0 0 0 15706 1734 15205 295209;295210;295211;295212;295213;295214;295215;295216;295217;295218;295219 181267;181268 181268 2 NMLENPGWYTAYTPYQPEVSQGR Unmodified 2700.2279 0.22785104 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 1 49.374 47.978 2;3 4.2403E-89 23372 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 329.06 325.23 1102100000 65890000 60012000 59390000 7086700 5854400 6578800 88957000 77434000 88077000 6541100 7154200 4723800 100580000 87127000 90310000 0 0 0 108670000 112320000 100970000 9220900 8948100 6238900 15707 1409 15206 295220;295221;295222;295223;295224;295225;295226;295227;295228;295229;295230;295231;295232;295233;295234;295235;295236;295237;295238;295239;295240;295241;295242;295243;295244;295245;295246;295247;295248;295249;295250;295251;295252;295253;295254;295255;295256 181269;181270;181271;181272;181273;181274;181275;181276;181277;181278;181279;181280;181281;181282;181283;181284;181285;181286;181287;181288;181289;181290;181291 181275 23 NMLPSLYR Unmodified 992.51134 0.51133653 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 32.721 31.315 2 0.0003557 15120 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.85 121.72 201610000 2710900 0 0 0 0 0 38641000 43172000 41705000 0 0 0 22633000 22992000 23149000 0 0 0 2197700 1827800 2582000 0 0 0 15708 520 15207 295257;295258;295259;295260;295261;295262;295263;295264;295265;295266 181292;181293;181294;181295;181296;181297 181293 6 NMNPDGK Unmodified 774.33304 0.33303781 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 3 1 2 8.0396 8.8759 2 0.0033765 2170 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 108.24 108.24 348040000 20421000 19377000 19340000 0 0 0 40526000 33926000 31968000 0 0 0 24182000 27467000 17773000 0 0 0 34700000 37233000 41130000 0 0 0 15709 1388 15208 295267;295268;295269;295270;295271;295272;295273;295274;295275;295276;295277;295278;295279;295280;295281 181298;181299;181300;181301;181302;181303;181304;181305;181306;181307;181308;181309;181310;181311;181312;181313;181314;181315;181316 181307 19 NMNVPGEDQYR Unmodified 1321.5721 0.57209888 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.327 20.682 2 1.1715E-10 7788 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 196.99 196.99 2049900000 111070000 109260000 99515000 1017200 851510 991440 243420000 211940000 224070000 0 2126000 0 175830000 162550000 155050000 0 0 0 184290000 183180000 184780000 0 0 0 15710 1437 15209 295282;295283;295284;295285;295286;295287;295288;295289;295290;295291;295292;295293;295294;295295;295296;295297 181317;181318;181319;181320;181321;181322;181323;181324;181325;181326;181327;181328 181326 12 NMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTR Unmodified 3544.6353 0.6353329 32 P00547 thrB Homoserine kinase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 52.588 51.341 4 4.9451E-11 25033 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 109.11 107.51 330980000 55366000 52459000 52332000 0 0 0 12102000 0 8692300 0 0 0 22043000 15666000 18156000 0 0 0 32070000 28389000 33701000 0 0 0 15711 32 15210 295298;295299;295300;295301;295302;295303;295304;295305;295306;295307;295308 181329 181329 1 NMQDLVEDFK Unmodified 1237.5649 0.56488824 14 CON__P13647 no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 41.512 39.283 2 0.0005526 15966 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 95.608 6.6598 20186000 0 0 0 0 0 694020 0 0 0 3815000 3629700 3994200 0 0 0 0 0 0 0 0 0 3367100 2443000 2243300 + 15712 14 15211 295309;295310;295311;295312;295313;295314;295315 181330;181331;181332;181333 181330 3 NMQDMVEDYR Unmodified 1299.5224 0.5223715 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 29.612 28.206 2 3.1472E-12 10302 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 208.37 208.37 882720000 0 0 0 16230000 16471000 18346000 0 0 0 212100000 183330000 187180000 0 0 0 9081400 6379500 9408100 0 0 0 80438000 76975000 66780000 + 15713 11 15212 295316;295317;295318;295319;295320;295321;295322;295323;295324;295325;295326;295327;295328 181334;181335;181336;181337;181338;181339;181340;181341;181342;181343;181344;181345 181341 12 NMQDMVEDYR Oxidation (M) 1315.5173 0.51728612 11 CON__P04264 yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 4 4 3 2 2 24.26 23.258 2 0.0016175 6849 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 85.731 85.731 64565000 0 0 0 0 0 1257000 0 0 0 12256000 12828000 13337000 0 0 0 0 0 0 0 0 0 11234000 7059200 6593400 + 15714 11 15212 295329;295330;295331;295332;295333;295334;295335;295336;295337;295338;295339;295340;295341;295342;295343;295344;295345;295346;295347;295348 181346;181347;181348;181349;181350;181351;181352;181353;181354;181355 181353 2;3 10 NMQPGETLLIIADDPATTR Unmodified 2055.0307 0.030654787 409 P0A890 tusA Sulfurtransferase TusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.277 47.912 2 1.2422E-18 23345 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 179.56 174.4 152840000 14611000 15625000 12456000 0 0 0 17175000 14466000 13086000 0 0 0 10121000 9886600 10586000 0 0 0 11785000 13094000 9945200 0 0 0 15715 409 15213 295349;295350;295351;295352;295353;295354;295355;295356;295357;295358;295359;295360 181356;181357;181358;181359;181360;181361;181362;181363;181364;181365 181361 10 NMQTLYNTGR Unmodified 1196.5608 0.56080592 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.712 19.977 2 0.0003404 7995 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 109.44 105.5 167970000 24836000 20286000 18622000 947590 845820 1020200 32000000 33591000 30782000 2966600 0 2072800 0 0 0 0 0 0 0 0 0 0 0 0 15716 498 15214 295361;295362;295363;295364;295365;295366;295367;295368;295369;295370;295371 181366;181367;181368;181369 181367 4 NMSDLSLETTLFNEK Unmodified 1740.824 0.82401605 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.572 47.268 2 3.6734E-20 22827 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 260.22 251.82 124560000 6584700 7036700 8282900 3646900 3251200 3183600 6751100 5345000 7196400 0 0 2346800 7941300 5523100 6439700 2118100 0 0 12772000 14330000 12955000 2913900 2523500 3422300 15717 1417 15215 295372;295373;295374;295375;295376;295377;295378;295379;295380;295381;295382;295383;295384;295385;295386;295387;295388;295389;295390;295391 181370;181371;181372;181373;181374 181372 5 NMSTYVDYK Unmodified 1119.4907 0.49066067 144 P06996 ompC Outer membrane protein C no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.577 21.618 2 0.00035747 6385 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 112.84 80.907 741040000 44956000 41747000 40660000 0 19172000 23521000 23427000 22578000 29213000 76611000 49799000 39291000 24236000 22665000 23473000 26082000 19616000 20301000 31358000 32237000 28098000 31314000 33218000 37469000 15718 144 15216 295392;295393;295394;295395;295396;295397;295398;295399;295400;295401;295402;295403;295404;295405;295406;295407;295408;295409;295410;295411;295412;295413;295414 181375;181376;181377;181378;181379;181380;181381;181382;181383;181384;181385;181386;181387;181388;181389;181390;181391;181392;181393;181394;181395;181396;181397 181391 23 NMVGAVVGVQPFGGEGLSGTGPK Unmodified 2157.0888 0.088838367 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 45.378 43.875 2;3 9.3099E-44 17306 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 286.93 278.33 839070000 37955000 33170000 32786000 21208000 23233000 18799000 13271000 13707000 27963000 36558000 34234000 33485000 30245000 31898000 28467000 6298500 3479400 3508000 80525000 88960000 81444000 53027000 50981000 53873000 15719 215 15217 295415;295416;295417;295418;295419;295420;295421;295422;295423;295424;295425;295426;295427;295428;295429;295430;295431;295432;295433;295434;295435;295436;295437;295438;295439;295440;295441;295442;295443;295444;295445;295446;295447;295448;295449;295450;295451;295452;295453;295454;295455;295456;295457 181398;181399;181400;181401;181402;181403;181404;181405;181406;181407;181408;181409;181410;181411;181412;181413;181414;181415;181416;181417;181418;181419;181420;181421;181422;181423;181424;181425;181426;181427;181428;181429;181430;181431;181432 181410 34 NMVTQWGFSEK Unmodified 1325.6074 0.60742176 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.103 34.602 2 3.7036E-06 15813 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 177.06 166.23 743720000 22604000 26254000 20444000 12612000 0 12700000 62113000 48339000 43836000 37806000 30042000 31921000 52851000 44011000 43734000 13454000 10615000 9019300 52265000 73645000 64085000 31370000 0 0 15720 595 15218 295458;295459;295460;295461;295462;295463;295464;295465;295466;295467;295468;295469;295470;295471;295472;295473;295474;295475;295476;295477;295478 181433;181434;181435;181436;181437;181438;181439;181440;181441;181442;181443;181444;181445;181446;181447;181448;181449;181450;181451 181451 19 NMYFSGDGAR Unmodified 1116.4658 0.4658429 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 20.691 21.03 2 0.00032554 8154 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.41 106.19 1502100000 545730000 492820000 424320000 0 0 0 4851800 4093600 2144700 0 0 0 0 0 0 0 0 0 11751000 8567300 7783100 0 0 0 15721 1305 15219 295479;295480;295481;295482;295483;295484;295485;295486;295487 181452;181453;181454 181454 3 NMYFSGDGAR Oxidation (M) 1132.4608 0.46075752 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 1 0 By MS/MS By matching 1 1 15.96 16.635 2 0.062954 5811 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 42.348 42.348 18438000 8012200 10426000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15722 1305 15219 295488;295489 181455 181455 0 NNAGETVLLGR Unmodified 1142.6044 0.60438529 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.6 22.879 2 3.006E-07 9920 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 158.76 144.46 203820000 18224000 16825000 15749000 0 0 0 18895000 20801000 15709000 0 0 0 14910000 11117000 12334000 0 0 0 20226000 19321000 19714000 0 0 0 15723 35 15220 295490;295491;295492;295493;295494;295495;295496;295497;295498;295499;295500;295501 181456;181457;181458;181459;181460;181461;181462 181457 7 NNAGGHANHSLFWK Unmodified 1551.7331 0.73310805 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 3 3 3 3 3 3 14.796 15.578 2;3;4 3.2525E-20 5288 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 228.74 215.78 6827400000 505130000 882360000 604390000 1576000 1395800 1304400 335910000 294980000 289700000 0 0 0 437080000 424830000 380980000 0 0 0 772820000 1016700000 878270000 0 0 0 15724 28 15221 295502;295503;295504;295505;295506;295507;295508;295509;295510;295511;295512;295513;295514;295515;295516;295517;295518;295519;295520;295521;295522;295523;295524;295525;295526;295527;295528;295529;295530;295531;295532;295533;295534;295535;295536;295537;295538;295539;295540 181463;181464;181465;181466;181467;181468;181469;181470;181471;181472;181473;181474;181475;181476;181477;181478;181479;181480;181481;181482;181483;181484;181485;181486;181487;181488;181489;181490;181491 181479 29 NNASPADPQVH Unmodified 1148.521 0.52104959 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.929 12.623 2 0.00028243 3492 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.938 93.938 577560000 35572000 35244000 31097000 3007500 2826700 3679600 45339000 49601000 50514000 3876900 2106400 2701500 40996000 40645000 40280000 0 0 0 65613000 62792000 55595000 2665100 1916300 1495300 15725 292 15222 295541;295542;295543;295544;295545;295546;295547;295548;295549;295550;295551;295552;295553;295554;295555;295556;295557;295558;295559;295560;295561 181492;181493;181494;181495;181496;181497;181498;181499;181500;181501 181497 10 NNATEFR Unmodified 850.39333 0.39332988 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.991 12.606 2 0.1351 3376 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 58.246 45.038 238670000 0 0 0 0 0 0 34093000 44731000 30681000 2380800 1474300 1644500 28877000 22527000 26163000 0 0 0 12765000 11117000 19436000 968900 1074700 737690 15726 1087 15223 295562;295563;295564;295565;295566;295567;295568;295569;295570;295571;295572;295573;295574;295575;295576 181502;181503 181503 0 NNDTVHDFTK Unmodified 1189.5364 0.53636531 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 2 2 2 2 12.258 13.088 2;3 2.0056E-12 3764 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 214.71 213.06 2121100000 200800000 171170000 187910000 0 0 0 254690000 224860000 247530000 0 0 0 142060000 139890000 105610000 0 0 0 146580000 154400000 145600000 0 0 0 15727 1109 15224 295577;295578;295579;295580;295581;295582;295583;295584;295585;295586;295587;295588;295589;295590;295591;295592;295593;295594;295595;295596;295597;295598;295599;295600;295601 181504;181505;181506;181507;181508;181509;181510;181511;181512;181513;181514;181515;181516;181517;181518;181519;181520;181521;181522;181523;181524;181525;181526;181527 181505 24 NNDTVHDFTKDPIQPYIDGEWVK Unmodified 2730.2926 0.29255979 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 42.407 40.706 3;4 6.7741E-22 18970 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 166.01 163.47 3141700000 293960000 308500000 257580000 0 1523100 1354600 287790000 324690000 348730000 0 0 0 175860000 177620000 177640000 0 0 0 261690000 220500000 304290000 0 0 0 15728 1109 15225 295602;295603;295604;295605;295606;295607;295608;295609;295610;295611;295612;295613;295614;295615;295616;295617;295618;295619;295620;295621;295622;295623;295624;295625;295626;295627 181528;181529;181530;181531;181532;181533;181534;181535;181536;181537;181538;181539;181540;181541;181542;181543;181544;181545;181546;181547;181548 181548 21 NNDTVTTSAPVTAFGATTTNNIK Unmodified 2337.1448 0.14483292 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 34.401 32.972 2;3 1.2289E-28 15721 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 243.69 241.13 260050000 80998000 76348000 78585000 7956600 8865900 7294000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15729 96 15226 295628;295629;295630;295631;295632;295633;295634;295635;295636;295637;295638;295639 181549;181550;181551;181552;181553;181554;181555;181556;181557 181555 9 NNDYSLVYTVENNQLGLYK Unmodified 2246.0855 0.085527129 1897 P77318 ydeN Uncharacterized sulfatase YdeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 49.197 47.857 3 4.3572E-07 23547 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 103.75 94.469 28266000 9381000 10802000 8083200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15730 1897 15227 295640;295641;295642 181558;181559;181560 181558 3 NNEAFLDR Unmodified 977.45666 0.45665842 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.942 19.375 2 0.0001182 7301 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.58 148.18 913010000 173070000 153660000 125730000 1267400 1403600 1218100 105230000 114160000 109070000 1276200 814810 817030 20348000 22321000 17948000 0 0 0 20424000 22228000 22015000 0 0 0 15731 757 15228 295643;295644;295645;295646;295647;295648;295649;295650;295651;295652;295653;295654;295655;295656;295657;295658;295659;295660 181561;181562;181563;181564;181565;181566;181567;181568;181569;181570;181571;181572 181567 12 NNEFNHENLQLGINEAHALGK Unmodified 2361.1462 0.14617033 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 2 1 2 2 2 29.987 28.578 3;4 1.1312E-21 13385 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 162.42 159.95 966000000 77875000 93598000 25569000 0 0 0 82357000 68324000 73147000 0 0 1873800 77673000 73279000 21773000 0 0 0 117120000 135220000 118190000 0 0 0 15732 1856 15229 295661;295662;295663;295664;295665;295666;295667;295668;295669;295670;295671;295672;295673;295674;295675;295676;295677;295678;295679;295680;295681;295682;295683 181573;181574;181575;181576;181577;181578;181579;181580;181581;181582;181583;181584 181575 12 NNEHIQVITSLTNALDDESVIER Unmodified 2609.2933 0.29328807 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.778 46.597 3 5.7666E-29 23207 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 195.15 191.89 220800000 5976600 6774300 8250500 6927200 0 6670000 28844000 28455000 23390000 0 0 0 12533000 14632000 10658000 5771600 6022000 7942900 15328000 8464300 12206000 0 5792700 6162100 15733 33 15230 295684;295685;295686;295687;295688;295689;295690;295691;295692;295693;295694;295695;295696;295697;295698;295699;295700;295701;295702 181585;181586;181587;181588;181589;181590;181591;181592 181587 8 NNEVYLIEVNPR Unmodified 1458.7467 0.74669243 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 1 2 3 2 2 1 1 1 36.121 34.569 2;3 7.1288E-17 16554 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 211.78 205.47 1042600000 221620000 248720000 218030000 1479600 898140 1391400 0 2690300 0 0 0 0 31229000 21262000 22390000 0 0 0 81369000 89145000 92219000 4027900 3273700 2883300 15734 65 15231 295703;295704;295705;295706;295707;295708;295709;295710;295711;295712;295713;295714;295715;295716;295717;295718;295719;295720;295721;295722;295723;295724;295725;295726;295727 181593;181594;181595;181596;181597;181598;181599;181600;181601;181602;181603;181604 181597 12 NNFMTPEQFR Unmodified 1282.5765 0.57645598 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.09 29.675 2 0.00018646 11339 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 122.52 119.11 246630000 17461000 13986000 15558000 1657600 1816700 0 25235000 23187000 26321000 4567300 3990200 4634000 954280 0 0 1242000 944340 669590 34090000 30843000 29892000 3009400 3582500 2984800 15735 819 15232 295728;295729;295730;295731;295732;295733;295734;295735;295736;295737;295738;295739;295740;295741;295742;295743;295744;295745;295746;295747;295748 181605;181606;181607 181607 2 NNGFDGTDAVLEFNKPEQVK Unmodified 2221.0651 0.065126037 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 1 1 1 2 3 2 3 3 3 1 1 1 3 3 3 1 1 1 35.711 34.244 2;3 1.2487E-67 15733 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 350.97 347.17 7788100000 72605000 82155000 70495000 3754400 3324600 4465700 599990000 579400000 555760000 0 0 0 616820000 568670000 641920000 3126400 2152000 1558200 1308000000 1322800000 1341200000 3194000 3531000 3224900 15736 993 15233 295749;295750;295751;295752;295753;295754;295755;295756;295757;295758;295759;295760;295761;295762;295763;295764;295765;295766;295767;295768;295769;295770;295771;295772;295773;295774;295775;295776;295777;295778;295779;295780;295781;295782;295783;295784;295785;295786;295787;295788;295789 181608;181609;181610;181611;181612;181613;181614;181615;181616;181617;181618;181619;181620;181621;181622;181623;181624;181625;181626;181627;181628;181629;181630;181631;181632 181630 25 NNGIDPQVMVER Unmodified 1370.6612 0.66124824 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 28.188 27.004 2 3.0012E-06 11908 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 138.22 124.87 322070000 49851000 48227000 0 0 0 0 26486000 0 0 0 0 0 29006000 25157000 31077000 0 0 0 34176000 40551000 37540000 0 0 0 15737 170 15234 295790;295791;295792;295793;295794;295795;295796;295797;295798 181633;181634;181635 181635 2 NNGSEVQSLDPHK Unmodified 1423.6692 0.66917039 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.639 13.472 2;3 5.8936E-09 3954 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 168.69 156.07 3556200000 980820000 988670000 981970000 0 0 0 86449000 81785000 58880000 0 0 0 55310000 50832000 53689000 0 0 0 73386000 74364000 70034000 0 0 0 15738 1217 15235 295799;295800;295801;295802;295803;295804;295805;295806;295807;295808;295809;295810;295811;295812;295813;295814;295815;295816;295817;295818;295819;295820;295821;295822 181636;181637;181638;181639;181640;181641;181642;181643;181644;181645;181646;181647;181648;181649;181650;181651;181652;181653;181654;181655;181656;181657;181658 181639 23 NNGSEVQSLDPHKIEGVPESNISR Unmodified 2605.2732 0.27322133 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 27.038 25.876 2;3;4 8.1214E-84 11781 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 375.55 363.4 2895600000 847660000 876410000 735420000 16938000 14787000 17232000 43761000 47180000 52838000 0 0 0 34223000 31193000 30345000 0 0 0 52257000 54652000 40729000 0 0 0 15739 1217 15236 295823;295824;295825;295826;295827;295828;295829;295830;295831;295832;295833;295834;295835;295836;295837;295838;295839;295840;295841;295842;295843;295844;295845;295846;295847;295848;295849;295850;295851;295852;295853;295854;295855 181659;181660;181661;181662;181663;181664;181665;181666;181667;181668;181669;181670;181671;181672;181673;181674;181675;181676;181677;181678;181679;181680;181681;181682;181683;181684;181685 181675 27 NNIAHMLVLPSLMAAIVTQHR Unmodified 2328.2559 0.25586089 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.673 52.243 4 2.8728E-10 21085 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 116.73 113.2 111720000 7334300 5656400 4476300 2987000 0 4812700 6732600 6870100 5584900 7191800 5136300 6343500 4668200 4342300 4210800 0 0 0 8374600 7932000 10008000 5155000 3908000 0 15740 324 15237 295856;295857;295858;295859;295860;295861;295862;295863;295864;295865;295866;295867;295868;295869;295870;295871;295872;295873;295874 181686;181687;181688;181689 181687 4 NNIAIITSYNDMLSAHQPYEHYPEIIR Unmodified 3201.5553 0.55533319 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 2 2 1 45.741 44.259 3;4 2.8283E-41 20717 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 215.68 199.78 778080000 9838400 9193400 5448600 0 0 0 73339000 99379000 98158000 0 0 0 80780000 95726000 94433000 0 0 0 86194000 110410000 15183000 0 0 0 15741 785 15238 295875;295876;295877;295878;295879;295880;295881;295882;295883;295884;295885;295886;295887;295888;295889;295890;295891;295892;295893;295894 181690;181691;181692;181693;181694;181695;181696;181697;181698;181699;181700;181701;181702 181700 13 NNIEAVTK Unmodified 887.47125 0.47124585 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 12.116 12.955 2 0.0067301 3481 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 84.498 65.715 637900000 62859000 66567000 60838000 0 0 0 75878000 0 0 0 0 0 60266000 0 94058000 0 0 0 81368000 66251000 69820000 0 0 0 15742 1136 15239 295895;295896;295897;295898;295899;295900;295901;295902;295903;295904;295905;295906 181703;181704;181705;181706;181707;181708;181709;181710;181711;181712;181713 181713 11 NNIPVIAQHTGADSASVIFDAIQAAK Unmodified 2650.3715 0.37147881 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 3 1 1 2 2 3 2 2 1 2 3 3 3 1 1 1 3 3 3 1 1 1 50.678 49.425 2;3;4 2.0935E-40 24063 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 267.6 250.09 1290000000 69416000 81498000 73866000 7793000 7657900 8553700 94862000 101010000 97792000 39059000 35130000 27237000 80923000 87290000 79763000 9501500 8451300 7034000 110740000 106960000 108760000 13777000 16839000 16126000 15743 1052 15240 295907;295908;295909;295910;295911;295912;295913;295914;295915;295916;295917;295918;295919;295920;295921;295922;295923;295924;295925;295926;295927;295928;295929;295930;295931;295932;295933;295934;295935;295936;295937;295938;295939;295940;295941;295942;295943;295944;295945;295946;295947;295948;295949;295950;295951 181714;181715;181716;181717;181718;181719;181720;181721;181722;181723;181724;181725;181726;181727;181728;181729;181730 181718 17 NNISASDFK Unmodified 994.47197 0.47197413 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.681 17.261 2 0.00028218 6138 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 119.41 114.83 641220000 0 0 0 0 0 0 56453000 56951000 50940000 0 0 0 58323000 53371000 49831000 958090 1010500 1169400 106570000 103020000 102610000 0 0 0 15744 1124 15241 295952;295953;295954;295955;295956;295957;295958;295959;295960;295961;295962;295963 181731;181732;181733;181734;181735;181736;181737 181733 7 NNKGEVITK Unmodified 1001.5506 0.55055881 1871 P76550 yffS Uncharacterized protein YffS yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 9.8611 10.613 2 0.00030998 2376 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.36 82.643 26281000 7814900 6411400 3027300 0 0 0 0 0 0 0 2679900 0 859040 595520 0 0 0 0 1868300 1424100 1600100 0 0 0 15745 1871 15242 295964;295965;295966;295967;295968;295969;295970;295971;295972 181738;181739 181739 2 NNLDNAVEQLR Unmodified 1284.6422 0.64222736 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.143 26.901 2 7.4003E-06 9169 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 174.41 170.84 164280000 0 8593400 0 1945300 2159300 2157300 9518400 7352700 6611900 7889900 12044000 9881500 10597000 10630000 13136000 5821300 3565200 3532200 0 13625000 12948000 6455700 8751600 7058100 15746 73 15243 295973;295974;295975;295976;295977;295978;295979;295980;295981;295982;295983;295984;295985;295986;295987;295988;295989;295990;295991;295992;295993 181740;181741;181742;181743;181744;181745;181746;181747;181748;181749 181740 5 NNLFFVIR Unmodified 1021.5709 0.57090032 1536 P39401 mdoB Phosphoglycerol transferase I yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.134 43.435 2 0.00010981 21148 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 159.19 159.19 91892000 4099200 4206800 3477400 0 0 0 8088400 8422700 9292600 3278300 2109700 1639600 5138100 5289200 5651500 0 0 0 8650100 8670800 8393800 2265200 1450000 1768300 15747 1536 15244 295994;295995;295996;295997;295998;295999;296000;296001;296002;296003;296004;296005;296006;296007;296008;296009;296010;296011 181750;181751;181752;181753;181754;181755;181756;181757;181758;181759 181754 9 NNLGVISLNLPR Unmodified 1308.7514 0.75138388 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.59 42.075 2 3.1115E-08 19616 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 195.79 192.81 711700000 11247000 11542000 10207000 0 0 0 95843000 83096000 80148000 0 0 0 67221000 63222000 64279000 0 0 0 80604000 74001000 70289000 0 0 0 15748 1323 15245 296012;296013;296014;296015;296016;296017;296018;296019;296020;296021;296022;296023 181760;181761;181762;181763;181764;181765 181764 5 NNLTSAYIR Unmodified 1050.5458 0.54580778 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 21.732 21.929 2 0.0012095 8999 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.37 80.953 70711000 25686000 23881000 21144000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15749 636 15246 296024;296025;296026 181766;181767 181766 2 NNMTIGIGAGQMSR Unmodified 1448.6864 0.68641714 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.424 27.176 2 1.2446E-19 12509 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 212.89 208.59 533490000 168050000 141550000 127760000 0 0 0 7869300 7376300 7305600 0 0 0 8460000 6947700 8177200 0 0 0 17622000 15993000 16370000 0 0 0 15750 1111 15247 296027;296028;296029;296030;296031;296032;296033;296034;296035;296036;296037;296038 181768;181769;181770;181771;181772 181770 3 NNPGVSCWWMADAGVEDR Unmodified 2062.8625 0.8625436 1474 P37613 panM PanD maturation factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.152 44.662 2 7.4813E-14 21858 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.16 144.89 49494000 4549100 5056200 4505200 0 0 0 4448700 3924600 4333300 0 0 0 4153600 2913900 3150900 0 0 0 4862000 4008100 3588800 0 0 0 15751 1474 15248 296039;296040;296041;296042;296043;296044;296045;296046;296047;296048;296049;296050 181773;181774 181773 2 NNPLLVGESGVGK Unmodified 1282.6881 0.68811492 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.63 26.427 2 3.418E-07 11562 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 150.1 142.88 230740000 32230000 33110000 33815000 1965400 2186100 2550300 18470000 17409000 14286000 7362300 6575600 8330500 8761800 9001300 7970400 2246600 0 1977500 8338600 6353000 7805200 0 0 0 15752 658 15249 296051;296052;296053;296054;296055;296056;296057;296058;296059;296060;296061;296062;296063;296064;296065;296066;296067;296068;296069;296070 181775;181776;181777;181778;181779 181778 5 NNPSELTIFYPAVPR Unmodified 1716.8835 0.88352026 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 2 1 2 2 2 2 1 2 2 2 1 47.897 46.364 2;3 3.88E-27 22889 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 237.68 224.67 217370000 3730200 4166600 0 0 0 0 16695000 24682000 19666000 3355400 6116300 5476300 20031000 19562000 12819000 0 0 0 25791000 24427000 27791000 0 3061800 0 15753 1494 15250 296071;296072;296073;296074;296075;296076;296077;296078;296079;296080;296081;296082;296083;296084;296085;296086;296087;296088;296089;296090;296091;296092;296093;296094 181780;181781;181782;181783;181784;181785;181786 181783 6 NNPVIAYEDDCVTR Unmodified 1664.7464 0.74643444 866 P0AEJ6 eutB Ethanolamine ammonia-lyase heavy chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.096 27.767 2 8.0564E-06 12379 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 109.24 107.83 62259000 6035100 5783800 6178600 0 0 1276800 5437100 5101700 4129600 0 0 0 4334000 3836200 3584900 0 0 0 4427500 4880800 3546400 2049800 0 1657000 15754 866 15251 296095;296096;296097;296098;296099;296100;296101;296102;296103;296104;296105;296106;296107;296108;296109 181787;181788 181788 2 NNPVLIGEPGVGK Unmodified 1292.7089 0.70885036 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.203 26.817 2 7.6559E-07 12271 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.49 136.24 1725200000 208940000 199120000 183320000 1621100 1900800 1614600 206710000 204400000 214320000 4185600 4058500 3564400 76518000 72641000 73559000 0 0 0 85743000 90299000 91294000 650200 743630 0 15755 1662 15252 296110;296111;296112;296113;296114;296115;296116;296117;296118;296119;296120;296121;296122;296123;296124;296125;296126;296127;296128;296129 181789;181790;181791;181792;181793;181794;181795;181796;181797;181798;181799 181794 11 NNQHDVAIVR Unmodified 1164.6 0.59996862 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 2 2 1 1 1 2 1 1 1 2 2 2 1 1 1 12.108 12.812 2;3 5.1724E-17 3528 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 234.81 230.45 1873700000 90029000 93553000 78106000 2425000 2363300 2180100 101990000 120190000 109260000 3692900 2128100 0 60294000 130440000 75361000 905000 0 1125000 336640000 328090000 310320000 8794700 7656700 8168400 15756 937 15253 296130;296131;296132;296133;296134;296135;296136;296137;296138;296139;296140;296141;296142;296143;296144;296145;296146;296147;296148;296149;296150;296151;296152;296153;296154;296155;296156;296157;296158 181800;181801;181802;181803;181804;181805;181806;181807;181808;181809;181810;181811;181812;181813;181814 181803 15 NNSAQLEHEATTSR Unmodified 1556.7179 0.7179115 1911 P77522 sufB FeS cluster assembly protein SufB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.67 12.527 3 0.046179 3397 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 32.285 25.598 202380000 16437000 17052000 19210000 465410 631040 0 30721000 28050000 25018000 0 0 0 14163000 6651100 0 0 0 0 15626000 15603000 12751000 0 0 0 15757 1911 15254 296159;296160;296161;296162;296163;296164;296165;296166;296167;296168;296169;296170;296171 181815 181815 1 NNSLSQEVQNAQHQR Unmodified 1751.8299 0.82992156 909 P0AF36 zapB Cell division protein ZapB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 15.312 15.934 2;3 1.249E-96 5293 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 381.56 365.67 9964000000 535190000 671450000 525940000 8024200 7207000 6994500 1137800000 798740000 865810000 13347000 11013000 13894000 890840000 839740000 1086400000 14246000 12960000 15651000 946790000 782610000 770610000 0 4008200 4700600 15758 909 15255 296172;296173;296174;296175;296176;296177;296178;296179;296180;296181;296182;296183;296184;296185;296186;296187;296188;296189;296190;296191;296192;296193;296194;296195;296196;296197;296198;296199;296200;296201;296202;296203;296204;296205;296206;296207;296208;296209;296210;296211;296212;296213;296214 181816;181817;181818;181819;181820;181821;181822;181823;181824;181825;181826;181827;181828;181829;181830;181831;181832;181833;181834;181835;181836;181837;181838;181839;181840;181841;181842;181843;181844;181845;181846;181847;181848;181849;181850;181851;181852 181846 37 NNTAPAPWTYDNIAYMK Unmodified 1968.904 0.90399771 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.212 41.637 2 7.7564E-11 20104 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.78 146.69 1107700000 100440000 86154000 84948000 0 0 0 86873000 88466000 85967000 0 0 1187900 83788000 75741000 72758000 0 0 0 121420000 112300000 107640000 0 0 0 15759 170 15256 296215;296216;296217;296218;296219;296220;296221;296222;296223;296224;296225;296226;296227 181853;181854;181855;181856;181857;181858;181859;181860;181861;181862;181863;181864 181861 12 NNTPGNYTFILK Unmodified 1380.7038 0.70376498 962 P0AFR4 yciO Uncharacterized protein YciO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.85 34.254 2 2.8146E-05 16445 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 136.63 126.85 275200000 47269000 44226000 43720000 4426800 3880300 4137900 14629000 11765000 13531000 0 0 0 9881600 10465000 10945000 0 0 0 17230000 21381000 16289000 0 1425700 0 15760 962 15257 296228;296229;296230;296231;296232;296233;296234;296235;296236;296237;296238;296239;296240;296241;296242;296243 181865;181866;181867;181868;181869;181870;181871;181872;181873;181874;181875;181876;181877;181878;181879 181874 15 NNVDVIK Unmodified 800.43922 0.43921744 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.342 14.207 2 0.010377 4453 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.866 61.868 758380000 63013000 55329000 54265000 0 0 0 87125000 78070000 73581000 0 0 0 56747000 61544000 50317000 0 0 0 66196000 57353000 54844000 0 0 0 15761 128 15258 296244;296245;296246;296247;296248;296249;296250;296251;296252;296253;296254;296255 181880;181881;181882;181883;181884;181885;181886;181887;181888;181889;181890 181880 11 NNVGTGSTVK Unmodified 975.49852 0.49852324 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.507 11.12 2 4.6504E-06 2532 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.4 124.62 3586100000 19442000 0 0 0 546420 0 0 443430000 0 0 0 7218800 474980000 492540000 464090000 0 5395000 5709500 554950000 566630000 540950000 0 4772400 5465400 15762 994 15259 296256;296257;296258;296259;296260;296261;296262;296263;296264;296265;296266;296267;296268;296269;296270;296271 181891;181892;181893 181893 3 NNVIGLLEDPK Unmodified 1210.6558 0.65575216 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 37.566 35.886 2 0.00020622 17723 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.7 93.904 1683100000 151150000 133090000 105470000 0 284500 0 167500000 159340000 138810000 0 0 0 126390000 123420000 113850000 0 0 0 158210000 153690000 151820000 0 0 0 15763 57 15260 296272;296273;296274;296275;296276;296277;296278;296279;296280;296281;296282;296283;296284 181894;181895;181896;181897;181898;181899;181900;181901;181902;181903;181904;181905 181895 12 NNVLALGDLAK Unmodified 1126.6346 0.63462279 1179 P21367 ycaC Uncharacterized protein YcaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 1 2 1 1 1 2 2 2 1 2 2 1 1 1 2 1 1 2 2 2 42.561 41.054 2 0.00031406 17063 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.886 64.942 2057500000 429520000 406520000 398220000 4578500 1664300 4399800 149300000 166360000 175920000 21755000 21506000 27102000 29356000 28607000 28380000 1263000 1709200 2150700 57422000 42845000 35339000 8825000 7215800 7544200 15764 1179 15261 296285;296286;296287;296288;296289;296290;296291;296292;296293;296294;296295;296296;296297;296298;296299;296300;296301;296302;296303;296304;296305;296306;296307;296308;296309;296310;296311;296312;296313;296314;296315;296316;296317;296318;296319;296320 181906;181907;181908;181909;181910;181911;181912;181913;181914;181915;181916;181917;181918;181919 181909 5 NNVLSGLFCGLR Unmodified 1348.6922 0.69215444 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.492 49.102 2 2.2212E-23 23957 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 237.21 222.06 494980000 70835000 71955000 73890000 0 0 0 41158000 36109000 32732000 0 0 0 18957000 14438000 17187000 0 0 0 41096000 38966000 37654000 0 0 0 15765 1465 15262 296321;296322;296323;296324;296325;296326;296327;296328;296329;296330;296331;296332 181920;181921;181922;181923;181924;181925;181926;181927;181928;181929;181930 181926 11 NNVVVSR Unmodified 786.4348 0.43480077 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 11.775 11.981 2 0.00073675 3204 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 146.21 117.06 2127000000 0 0 0 0 0 0 0 0 0 423220000 385630000 338380000 0 0 0 93352000 68741000 62256000 398310000 0 0 354310000 2772400 0 15766 990 15263 296333;296334;296335;296336;296337;296338;296339;296340;296341 181931;181932 181932 2 NNWGQTEQQQEPSAAR Unmodified 1842.8245 0.82450184 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 15.892 16.496 2;3 3.0054E-39 5741 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 313.05 309.52 1195400000 73560000 83497000 67696000 10644000 11782000 13325000 93167000 86480000 84788000 22574000 23258000 23108000 83122000 75567000 73807000 4025100 0 2051800 96438000 105210000 99457000 19934000 20733000 21188000 15767 245 15264 296342;296343;296344;296345;296346;296347;296348;296349;296350;296351;296352;296353;296354;296355;296356;296357;296358;296359;296360;296361;296362;296363;296364;296365;296366;296367;296368;296369;296370;296371;296372;296373;296374;296375;296376;296377;296378;296379;296380;296381;296382;296383;296384;296385 181933;181934;181935;181936;181937;181938;181939;181940;181941;181942;181943;181944;181945;181946;181947;181948;181949;181950;181951;181952;181953;181954;181955;181956;181957;181958;181959;181960;181961;181962;181963;181964;181965;181966;181967;181968;181969;181970;181971;181972 181941 40 NNYGQYLYK Unmodified 1161.5455 0.54547343 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 2 2 1 23.315 22.638 2 1.491E-05 10119 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.03 142.79 973890000 47304000 46971000 41940000 0 0 0 80458000 75495000 81771000 0 0 0 84954000 89490000 69805000 0 0 0 117340000 132270000 106090000 0 0 0 15768 1489 15265 296386;296387;296388;296389;296390;296391;296392;296393;296394;296395;296396;296397;296398;296399;296400 181973;181974;181975;181976;181977;181978;181979;181980;181981;181982;181983;181984 181974 12 NPAADKVNVTINTTSVDTNHAER Unmodified 2466.2099 0.20989279 470 P0A8X2 yceI Protein YceI yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 2 1 1 1 2 2 2 19.879 20.357 3;4 4.1993E-10 8001 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 121.47 114.02 110530000 9203800 8268600 11688000 0 0 0 10652000 10879000 6022400 0 0 0 4962000 0 4925800 0 0 0 15637000 15191000 13100000 0 0 0 15769 470 15266 296401;296402;296403;296404;296405;296406;296407;296408;296409;296410;296411;296412;296413;296414;296415;296416 181985;181986 181985 2 NPAQALNLQDR Unmodified 1238.6367 0.63674805 1129 P16689 phnM Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 22.015 22.03 2 2.8418E-07 9144 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 173.37 162.22 60292000 0 0 0 0 0 0 0 0 4366700 0 0 0 3290900 3526200 4369300 907020 0 462310 17230000 11777000 13006000 0 1357400 0 15770 1129 15267 296417;296418;296419;296420;296421;296422;296423;296424;296425;296426 181987;181988;181989 181988 3 NPDIVAGVAALK Unmodified 1166.6659 0.66592292 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.127 33.659 2 3.7349E-08 16337 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 160.77 158.84 472780000 35768000 36476000 28703000 0 0 593570 42091000 44042000 44552000 0 0 0 38326000 34757000 37472000 0 0 0 43570000 43228000 43200000 0 0 0 15771 670 15268 296427;296428;296429;296430;296431;296432;296433;296434;296435;296436;296437;296438;296439 181990;181991;181992;181993;181994;181995;181996;181997;181998;181999;182000;182001 181992 12 NPDKHLEAGCDLLK Unmodified 1608.793 0.7929907 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 2 3 3 3 1 1 1 1 1 1 1 3 3 3 17.958 18.214 2;3;4 1.4934E-34 5480 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 249.28 180.62 9301400000 3915300 0 0 0 0 0 4801200 5935000 7266500 1628600000 3615500000 3931900000 2133400 3303300 2930000 2911100 0 0 7681600 3742700 5620400 23896000 22793000 28438000 15772 497 15269 296440;296441;296442;296443;296444;296445;296446;296447;296448;296449;296450;296451;296452;296453;296454;296455;296456;296457;296458;296459;296460;296461;296462;296463;296464;296465;296466;296467;296468;296469 182002;182003;182004;182005;182006;182007;182008;182009;182010;182011;182012;182013;182014 182009 13 NPDLIIGVGGCVASQEGEHIR Unmodified 2220.0957 0.095714659 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.059 34.543 3 3.8081E-15 16605 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.46 127.67 128440000 13592000 11724000 8070800 1738200 1826300 2479400 0 0 7643500 0 3320700 3496700 9876400 6511400 8447000 919520 941850 0 15318000 11003000 12889000 3900400 2295300 2444500 15773 862 15270 296470;296471;296472;296473;296474;296475;296476;296477;296478;296479;296480;296481;296482;296483;296484;296485;296486;296487;296488;296489 182015 182015 1 NPDMPADELEK Unmodified 1257.5547 0.55471749 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.243 22.063 2 2.3627E-07 9132 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 163.38 151.43 963910000 70494000 57369000 59788000 0 0 0 67342000 62127000 65588000 0 0 0 88550000 87720000 75505000 0 0 0 105640000 118970000 104810000 0 0 0 15774 1073 15271 296490;296491;296492;296493;296494;296495;296496;296497;296498;296499;296500;296501 182016;182017;182018;182019;182020;182021;182022;182023;182024;182025;182026;182027;182028 182021 13 NPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGR Unmodified 3776.7972 0.79717146 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 52.455 51.193 4 7.8765E-19 25229 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.5 145.95 384550000 54538000 44184000 27848000 0 0 0 43691000 44413000 49917000 0 0 0 14506000 12239000 0 0 0 0 31846000 29124000 32245000 0 0 0 15775 1174 15272 296502;296503;296504;296505;296506;296507;296508;296509;296510;296511;296512 182029;182030;182031;182032;182033;182034;182035 182031 7 NPDSSLNQQHMLPER Unmodified 1764.8213 0.82133071 818 P0ADX7 yhhA Uncharacterized protein YhhA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 1 1 1 19.39 19.855 2;3 4.5262E-82 7524 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 347.99 331.74 619080000 165340000 139860000 145980000 0 0 0 38771000 33679000 37954000 0 0 0 10449000 13099000 12055000 0 0 0 6612600 7045300 8233700 0 0 0 15776 818 15273 296513;296514;296515;296516;296517;296518;296519;296520;296521;296522;296523;296524;296525;296526;296527;296528;296529;296530;296531;296532 182036;182037;182038;182039;182040 182040 5 NPEAIADVIAAGAETASTAK Unmodified 1898.9585 0.9585357 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 47.102 45.699 2;3 6.7488E-46 21258 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 258.96 244.08 870380000 74341000 78684000 80098000 0 0 0 65546000 76860000 71657000 0 0 0 81073000 75783000 80483000 0 0 0 60762000 60543000 63081000 0 0 1466500 15777 671 15274 296533;296534;296535;296536;296537;296538;296539;296540;296541;296542;296543;296544;296545;296546;296547;296548;296549;296550;296551;296552;296553;296554;296555;296556;296557 182041;182042;182043;182044;182045;182046;182047;182048;182049;182050;182051;182052;182053;182054;182055;182056;182057;182058;182059;182060;182061 182060 18 NPEAMAASLK Unmodified 1030.5117 0.51173046 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 19.875 20.154 2 0.00016161 7662 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.81 117.13 1573900000 124510000 97154000 107100000 2157700 1693900 2084300 133160000 136450000 136640000 5372900 4641300 5243300 128270000 117340000 108750000 1851000 1466100 1409600 136040000 150570000 150230000 7873200 7001300 6862400 15778 651 15275 296558;296559;296560;296561;296562;296563;296564;296565;296566;296567;296568;296569;296570;296571;296572;296573;296574;296575;296576;296577;296578;296579;296580;296581;296582;296583 182062;182063;182064;182065;182066;182067;182068;182069;182070;182071;182072;182073;182074 182071 13 NPEGVAMGINPFVHGSAK Unmodified 1823.8989 0.89885275 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 2 2 2 1 2 2 2 2 2 2 1 1 2 34.179 32.598 2;3 7.2076E-56 15381 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 290.71 284.99 2393300000 164160000 153620000 159240000 1143400 0 2868400 163230000 171440000 145530000 2809500 0 0 168180000 162580000 167010000 0 0 0 295360000 304870000 319520000 3407300 3697600 4652800 15779 1169 15276 296584;296585;296586;296587;296588;296589;296590;296591;296592;296593;296594;296595;296596;296597;296598;296599;296600;296601;296602;296603;296604;296605;296606;296607;296608;296609;296610;296611;296612 182075;182076;182077;182078;182079;182080;182081;182082;182083;182084;182085;182086;182087;182088;182089;182090;182091;182092;182093;182094;182095 182086 21 NPESLALDAIER Unmodified 1326.6779 0.67794416 615 P0AAV4 ybgJ Uncharacterized protein YbgJ yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 39.325 37.172 2 0.00097688 18382 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.744 65.117 41711000 0 0 0 0 0 0 13441000 15115000 13155000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15780 615 15277 296613;296614;296615 182096 182096 1 NPEVQALLNDAPALGDYLDEESR Unmodified 2528.2031 0.20307608 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 1 2 1 1 2 2 2 2 2 1 52.47 51.133 3 7.866E-29 25835 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 192.27 191.24 647950000 54773000 53042000 49526000 0 0 0 27410000 27913000 39999000 2471000 0 0 35224000 64857000 64875000 0 0 0 75741000 78147000 71184000 0 0 2791200 15781 1634 15278 296616;296617;296618;296619;296620;296621;296622;296623;296624;296625;296626;296627;296628;296629;296630;296631;296632;296633;296634;296635;296636;296637;296638 182097;182098;182099 182098 3 NPEVQALLNDAPALGDYLDEESREHFAGLCK Unmodified 3470.6412 0.64124767 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 52.545 51.375 4 0.019392 25047 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 50.071 47.846 274630000 28671000 29045000 24135000 0 0 0 23405000 23972000 0 0 0 0 21990000 23097000 27780000 5660100 0 0 32993000 33880000 0 0 0 0 15782 1634 15279 296639;296640;296641;296642;296643;296644;296645;296646;296647;296648;296649 182100;182101 182101 0 NPEYFSTYMQEELK Unmodified 1777.7869 0.78690227 1678 P64490 yoaC Uncharacterized protein YoaC yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 42.333 40.638 2 2.5887E-14 19148 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 184.03 178.19 136250000 0 0 0 0 0 0 0 35880000 34959000 0 0 0 11026000 14138000 10960000 0 0 0 9721800 9653200 9911700 0 0 0 15783 1678 15280 296650;296651;296652;296653;296654;296655;296656;296657 182102;182103;182104;182105;182106 182104 5 NPFGFIGGIDAHCFNEEYLR Unmodified 2355.0743 0.074250936 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 50.261 48.841 3 3.7571E-07 23657 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 102.39 100.24 83796000 6609300 5155400 5426800 0 0 0 5584600 5912600 5056600 0 0 0 0 7149600 8218400 0 0 0 13924000 9864000 10895000 0 0 0 15784 1171 15281 296658;296659;296660;296661;296662;296663;296664;296665;296666;296667;296668 182107;182108 182107 2 NPGADTATR Unmodified 901.42536 0.42535829 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 4 4 4 2 2 3 1 1 1 6.3722 7.2715 1;2 5.2471E-35 1178 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 250.47 226.49 3538500000 33681000 36322000 41369000 725130 1125800 741700 715810000 657370000 633850000 0 0 0 215240000 164980000 282340000 0 0 0 250660000 232950000 271350000 0 0 0 15785 993 15282 296669;296670;296671;296672;296673;296674;296675;296676;296677;296678;296679;296680;296681;296682;296683;296684;296685;296686;296687;296688;296689;296690;296691;296692;296693;296694;296695;296696 182109;182110;182111;182112;182113;182114;182115;182116;182117;182118;182119;182120;182121;182122;182123;182124;182125;182126;182127;182128;182129;182130;182131 182112 22 NPGDEPIFTSTLELDMNDVEASLAGPK Unmodified 2859.3484 0.34841969 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 55.436 53.994 2;3 4.2615E-80 26732 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 355.27 353.53 435320000 152410000 127890000 138160000 0 0 0 0 7971000 0 0 0 0 0 0 3786500 0 0 0 0 5103200 0 0 0 0 15786 1254 15283 296697;296698;296699;296700;296701;296702;296703;296704;296705 182132;182133;182134;182135;182136 182134 5 NPGEDITEVVEEHFGIGAGK Unmodified 2097.0015 0.0014631481 589 P0AAD6 sdaC Serine transporter yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 50.407 48.804 3 0.13993 24206 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 21.569 15.989 45261000 0 0 0 0 0 0 20256000 16532000 0 0 0 0 0 0 0 0 0 0 8473200 0 0 0 0 0 15787 589 15284 296706;296707;296708 182137 182137 1 NPGSDASEPMSFEDYK Unmodified 1772.7199 0.71994491 1434 P33937 napA Periplasmic nitrate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 30.641 29.382 2 1.9256E-10 13276 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 151.78 151.78 27177000 7460400 4198000 0 0 0 0 3406200 0 0 0 0 0 4979500 4086000 3046300 0 0 0 0 0 0 0 0 0 15788 1434 15285 296709;296710;296711;296712;296713;296714 182138 182138 1 NPINGDPIFLDPEK Unmodified 1567.7882 0.7882229 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.267 40.693 2 9.6506E-11 15311 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 160.16 156.66 120120000 6214200 4809100 5234400 0 0 0 3801300 4432000 3426700 3913800 0 1858200 3816300 4431900 4298000 18046000 16793000 17933000 3993300 5692900 6221500 1624500 1915500 1665700 15789 395 15286 296715;296716;296717;296718;296719;296720;296721;296722;296723;296724;296725;296726;296727;296728;296729;296730;296731;296732;296733;296734 182139;182140;182141;182142 182139 4 NPLFLLDEIDK Unmodified 1315.7024 0.702368 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.088 51.853 2 2.6567E-07 25268 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 161.27 157.16 1536300000 106330000 104320000 92979000 2376900 0 2292100 117760000 130220000 129400000 19712000 15731000 16301000 100590000 89710000 103240000 63486000 56794000 79531000 96964000 84121000 96246000 9216500 9085800 9907200 15790 536 15287 296735;296736;296737;296738;296739;296740;296741;296742;296743;296744;296745;296746;296747;296748;296749;296750;296751;296752;296753;296754;296755;296756;296757 182143;182144;182145;182146;182147;182148;182149;182150;182151;182152;182153;182154;182155;182156;182157;182158;182159;182160;182161;182162;182163 182156 21 NPLFLLDEIDKMSSDMR Unmodified 2022.9754 0.97544809 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 54.415 54.47 3 2.7359E-14 20481 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 168.47 158.27 205160000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 58695000 71632000 74834000 0 0 0 0 0 0 15791 536 15288 296758;296759;296760 182164;182165;182166 182166 3 NPLGLAAGLDK Unmodified 1067.5975 0.597509 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 32.581 31.302 2 0.023425 14791 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 57.348 49.166 40828000 6679900 6096800 5414000 455150 0 0 0 2191500 0 0 0 0 2467600 2000800 1692600 0 0 0 4609100 5018400 4201700 0 0 0 15792 335 15289 296761;296762;296763;296764;296765;296766;296767;296768;296769;296770;296771 182167 182167 1 NPLYEEIADVTIR Unmodified 1531.7882 0.7882229 233 P0A6D7 aroK Shikimate kinase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 49.047 47.702 2;3 6.9454E-09 23157 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 186.87 169.85 639550000 60834000 58847000 58086000 0 0 0 52519000 57684000 49780000 0 0 0 55458000 11422000 48594000 0 0 0 60005000 61334000 64988000 0 0 0 15793 233 15290 296772;296773;296774;296775;296776;296777;296778;296779;296780;296781;296782;296783;296784;296785;296786;296787;296788;296789;296790;296791;296792;296793;296794;296795 182168;182169;182170;182171;182172;182173;182174;182175;182176;182177;182178;182179;182180;182181;182182;182183;182184;182185;182186;182187;182188;182189;182190 182176 23 NPLYSTAIGK Unmodified 1062.571 0.5709599 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.586 22.864 2 0.00038268 9703 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 106.68 95.818 418920000 47298000 42485000 43238000 0 0 0 37924000 34585000 33893000 0 0 0 26426000 29606000 24780000 0 0 0 31142000 32650000 34889000 0 0 0 15794 1845 15291 296796;296797;296798;296799;296800;296801;296802;296803;296804;296805;296806;296807 182191;182192;182193;182194;182195;182196;182197 182195 7 NPMDFVLWK Unmodified 1148.5689 0.56885141 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.011 49.755 2 0.00033686 24412 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.64 95.002 625030000 50483000 41656000 46301000 0 0 0 51357000 46130000 51812000 0 0 0 53895000 52866000 52107000 0 0 0 54114000 62421000 61892000 0 0 0 15795 1188 15292 296808;296809;296810;296811;296812;296813;296814;296815;296816;296817;296818;296819 182198;182199;182200;182201;182202;182203;182204;182205;182206;182207;182208;182209 182204 12 NPMELTDVADLLK Unmodified 1457.7436 0.74358089 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.017 51.585 2 1.0296E-17 24287 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 218.15 207.63 4704100000 289320000 274790000 253650000 0 0 0 367280000 395450000 378700000 0 0 0 451460000 461570000 420390000 0 0 0 417960000 478240000 515290000 0 0 0 15796 1189 15293 296820;296821;296822;296823;296824;296825;296826;296827;296828;296829;296830;296831 182210;182211;182212;182213;182214;182215;182216;182217;182218;182219;182220;182221 182220 12 NPNDIELYMFAQANSEHCR Unmodified 2308.0001 9.97146E-05 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.483 39.81 3 1.2038E-29 19234 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 212.72 212.72 261100000 66847000 54425000 54100000 0 0 0 6598300 7363600 5923200 0 0 0 8957100 8234700 8249700 0 0 0 14537000 15602000 10266000 0 0 0 15797 1107 15294 296832;296833;296834;296835;296836;296837;296838;296839;296840;296841;296842;296843 182222;182223;182224 182224 3 NPNNEHYLDTK Unmodified 1343.6106 0.61059288 347 P0A7I7 ribA GTP cyclohydrolase-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 1 1 1 2 2 2 2 2 2 11.963 12.735 2;3 4.8826E-20 3561 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 241.63 224.6 693730000 49375000 55771000 56843000 0 1717100 0 50174000 28790000 58271000 1038900 632970 728290 62983000 54045000 53900000 0 0 0 74418000 74699000 70344000 0 0 0 15798 347 15295 296844;296845;296846;296847;296848;296849;296850;296851;296852;296853;296854;296855;296856;296857;296858;296859;296860;296861;296862;296863;296864;296865;296866;296867;296868;296869;296870 182225;182226;182227;182228;182229;182230;182231;182232;182233;182234;182235;182236;182237;182238;182239;182240;182241 182231 17 NPNVTSVEHVVVLK Unmodified 1533.8515 0.85149185 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 27.559 26.604 2;3 5.6662E-11 11939 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 198.57 147.48 1576000000 590040000 514890000 465160000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5862500 0 0 0 0 0 15799 1305 15296 296871;296872;296873;296874;296875;296876;296877 182242;182243;182244;182245;182246;182247 182246 6 NPPAGEEEFLLDLLTNR Unmodified 1926.9687 0.96870646 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 1 1 2 2 3 3 2 2 3 3 3 55.398 53.951 2;3 7.7458E-40 26777 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 344.24 340.92 6579800000 937790000 899110000 836500000 4891300 2160700 1887700 292910000 248600000 257840000 0 0 0 397020000 360270000 351740000 0 0 0 680660000 647500000 660950000 0 0 0 15800 1444 15297 296878;296879;296880;296881;296882;296883;296884;296885;296886;296887;296888;296889;296890;296891;296892;296893;296894;296895;296896;296897;296898;296899;296900;296901;296902;296903;296904;296905;296906;296907;296908;296909;296910;296911;296912;296913 182248;182249;182250;182251;182252;182253;182254;182255;182256;182257;182258;182259;182260;182261;182262;182263;182264 182256 15 NPPSGITPLPLFEGDK Unmodified 1680.8723 0.87228688 1828 P76176 ydgD Uncharacterized serine protease YdgD yes yes 0 0 0 By MS/MS By matching 1 1 53.705 52.301 3 0.17106 24587 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 7.5738 1.4918 69113000 0 0 0 0 0 0 0 0 0 0 0 0 0 67962000 0 0 0 0 1151000 0 0 0 0 0 15801 1828 15298 296914;296915 182265 182265 1 NPQALVQLCLGAFK Unmodified 1557.8337 0.8337333 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 48.405 47.054 2;3 1.6475E-14 22083 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 190.96 184.72 271090000 0 0 0 0 0 0 38216000 32263000 31531000 0 0 0 32724000 29242000 29358000 0 0 0 21416000 29462000 26873000 0 0 0 15802 1467 15299 296916;296917;296918;296919;296920;296921;296922;296923;296924;296925;296926;296927;296928;296929;296930;296931;296932;296933 182266;182267;182268;182269;182270;182271;182272;182273;182274;182275 182272 7 NPQEHYNELAK Unmodified 1341.6313 0.63132832 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 12.057 12.901 2;3 8.9103E-21 3418 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 247.31 247.31 1942500000 232840000 191900000 205350000 0 0 0 93124000 88012000 94305000 0 0 0 195290000 156430000 152760000 0 0 0 160210000 180360000 191920000 0 0 0 15803 1450 15300 296934;296935;296936;296937;296938;296939;296940;296941;296942;296943;296944;296945;296946;296947;296948;296949;296950;296951;296952;296953;296954 182276;182277;182278;182279;182280;182281;182282;182283;182284;182285;182286;182287;182288 182287 13 NPQGEQTWSNNDK Unmodified 1516.6542 0.65424861 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 12.363 13.208 2 4.3236E-06 3817 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.83 161.67 40594000 0 0 0 0 0 0 8577900 10707000 8618100 0 0 0 0 2811200 0 0 0 0 5294300 4585500 0 0 0 0 15804 600 15301 296955;296956;296957;296958;296959;296960 182289 182289 1 NPQTGKEIK Unmodified 1013.5506 0.55055881 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 10.673 10.595 2 0.069165 1925 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 57.047 41.385 18485000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8797000 5234300 4453300 0 0 0 0 0 0 15805 726 15302 296961;296962;296963 182290;182291 182290 2 NPQTGKEITIAAAK Unmodified 1440.7936 0.79364262 727 P0ACF4 hupB DNA-binding protein HU-beta yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 1 2 2 1 2 2 2 1 2 2 2 14.78 15.109 2;3 0.00034416 3927 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 83.397 54.439 64938000 0 0 0 4061500 2077400 3502100 0 0 0 2897000 1526900 2539700 0 0 0 15802000 15191000 8064800 0 0 0 3911400 2690900 2672900 15806 727 15303 296964;296965;296966;296967;296968;296969;296970;296971;296972;296973;296974;296975;296976;296977;296978;296979;296980;296981;296982;296983;296984 182292;182293;182294;182295 182292 4 NPQVAAMLK Unmodified 970.52699 0.52698659 746 P0ACT6 uidR HTH-type transcriptional regulator UidR yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 22.582 22.016 2 0.0019268 8914 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 86.953 67.476 77368000 6328700 0 8930800 0 0 0 9502400 9497300 8640400 0 0 0 10179000 7178300 7698400 0 0 0 0 0 9412500 0 0 0 15807 746 15304 296985;296986;296987;296988;296989;296990;296991;296992;296993;296994 182296;182297;182298 182298 3 NPQVASR Unmodified 770.4035 0.40350064 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 9.5087 10.282 2 0.0004087 1926 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 154.92 137.07 371220000 96458000 38671000 22815000 0 0 0 0 0 0 0 0 114680 29548000 31178000 16418000 0 0 0 45109000 41905000 49008000 0 0 0 15808 94 15305 296995;296996;296997;296998;296999;297000;297001;297002;297003;297004 182299;182300;182301;182302;182303;182304;182305;182306;182307;182308 182308 10 NPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYR Unmodified 4423.0445 0.04445676 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 3 3 3 2 3 2 1 1 1 1 1 54.119 52.655 3;4;5 8.3591E-48 25770 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 214.98 214.98 1710400000 525080000 467480000 410310000 0 0 0 91095000 91913000 76322000 0 0 0 8493500 10040000 8755300 0 0 0 0 8322500 12632000 0 0 0 15809 1373 15306 297005;297006;297007;297008;297009;297010;297011;297012;297013;297014;297015;297016;297017;297018;297019;297020;297021;297022;297023;297024;297025 182309;182310;182311;182312;182313;182314;182315;182316;182317;182318 182317 10 NPQVFFQVLR Unmodified 1246.6822 0.68224168 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.314 42.799 2 0.0066982 20928 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.046 73.934 86370000 10705000 8888700 9878000 0 0 0 7097600 7532300 7070500 0 0 0 3031500 4550900 4475400 0 0 0 7675800 7279700 8185000 0 0 0 15810 134 15307 297026;297027;297028;297029;297030;297031;297032;297033;297034;297035;297036;297037 182319;182320;182321;182322;182323;182324 182319 1 NPSFSVK Unmodified 777.4021 0.40210366 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.476 16.05 2 0.040602 5492 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.757 29.865 8651700000 775330000 688480000 575170000 8571700 8531600 7030300 1009500000 920260000 823470000 5328100 5765800 5809400 523840000 416640000 508910000 1812400 0 1555900 790750000 800380000 766220000 3095200 2584400 2752200 15811 666 15308 297038;297039;297040;297041;297042;297043;297044;297045;297046;297047;297048;297049;297050;297051;297052;297053;297054;297055;297056;297057;297058;297059;297060 182325;182326;182327;182328;182329;182330;182331;182332;182333;182334;182335;182336;182337;182338 182327 14 NPSISTHLLGSNASSVIR Unmodified 1851.9803 0.9802742 1512 P39177 uspG Universal stress protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 1 2 2 2 2 2 2 30.222 28.78 2;3 1.144E-67 12873 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 312.25 290.69 3269300000 74880000 72405000 62851000 67148000 60238000 58446000 578320000 578780000 570700000 74360000 81148000 15881000 158700000 213150000 140290000 17672000 14933000 15615000 103730000 111860000 93324000 41328000 30921000 32640000 15812 1512 15309 297061;297062;297063;297064;297065;297066;297067;297068;297069;297070;297071;297072;297073;297074;297075;297076;297077;297078;297079;297080;297081;297082;297083;297084;297085;297086;297087;297088;297089;297090;297091;297092;297093;297094;297095;297096;297097;297098;297099;297100;297101;297102;297103;297104;297105 182339;182340;182341;182342;182343;182344;182345;182346;182347;182348;182349;182350;182351;182352;182353;182354;182355;182356;182357;182358;182359;182360;182361;182362;182363;182364;182365;182366;182367;182368;182369;182370;182371;182372;182373;182374;182375;182376;182377;182378 182375 35 NPTIDAWWK Unmodified 1129.5556 0.55564418 789 P0ADI4 entB Enterobactin synthase component B;Isochorismatase;Aryl carrier protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 40.268 38.529 2 0.0031935 19133 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.452 77.25 345900000 0 0 16580000 0 823050 475850 22637000 22946000 20880000 0 0 0 0 29332000 26727000 0 0 0 74042000 69163000 62300000 0 0 0 15813 789 15310 297106;297107;297108;297109;297110;297111;297112;297113;297114;297115;297116 182379;182380;182381 182380 3 NPTLLQCFHWYYPEGGK Unmodified 2108.9778 0.97783136 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.157 44.772 3 7.9311E-08 21839 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 111.22 108.89 113560000 0 0 0 0 0 0 0 0 0 0 0 0 14507000 11494000 16223000 0 0 0 26214000 23331000 21796000 0 0 0 15814 1282 15311 297117;297118;297119;297120;297121;297122 182382;182383;182384;182385;182386;182387 182383 6 NPVFWEK Unmodified 918.45995 0.45995289 830 P0AE22 aphA Class B acid phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.391 27.144 2 0.023786 11965 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 73.324 58.911 852540000 88430000 77442000 64210000 0 0 0 66346000 71377000 68148000 0 0 0 70430000 68412000 71414000 0 0 0 69928000 69811000 66591000 0 0 0 15815 830 15312 297123;297124;297125;297126;297127;297128;297129;297130;297131;297132;297133;297134 182388;182389;182390;182391;182392;182393;182394;182395;182396 182394 9 NPVGLSGVR Unmodified 897.50321 0.50321468 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.683 18.325 2 0.014438 6647 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 67.464 41.355 263790000 13910000 20447000 15961000 1525700 1158200 1250700 38422000 39252000 37745000 0 0 0 18294000 16260000 0 0 0 503620 26444000 32623000 0 0 0 0 15816 656 15313 297135;297136;297137;297138;297139;297140;297141;297142;297143;297144;297145;297146;297147;297148 182397 182397 0 NPVMVGAIPFDPR Unmodified 1411.7282 0.7282056 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 44.456 42.97 2 0.0036061 21011 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 64.906 47.675 142580000 0 0 0 0 0 0 0 0 6728700 0 0 0 14177000 11599000 0 0 0 0 36908000 37087000 36077000 0 0 0 15817 865 15314 297149;297150;297151;297152;297153;297154 182398;182399;182400 182399 0 NPVSGEVLWQGNDADAAQVEQACR Unmodified 2613.1878 0.18777714 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 37.768 36.329 3 3.019E-10 17684 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 124.1 121.1 101180000 36615000 33647000 30920000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15818 1835 15315 297155;297156;297157 182401;182402;182403 182401 3 NPVTNSGR Unmodified 843.41988 0.41987898 764 P0AD12 yeeZ Protein YeeZ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.258 11.781 2 0.0036566 2452 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 90.308 79.841 335140000 45164000 47643000 36316000 0 0 0 12847000 11171000 9977300 8897500 7792100 10093000 7341800 8279500 6848300 16794000 12474000 13636000 21316000 20958000 19063000 6952300 6019500 5559000 15819 764 15316 297158;297159;297160;297161;297162;297163;297164;297165;297166;297167;297168;297169;297170;297171;297172;297173;297174;297175;297176;297177;297178;297179;297180 182404;182405;182406;182407;182408;182409 182407 5 NPVVSAETAK Unmodified 1014.5346 0.53457439 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.753 13.46 2 0.00054607 3937 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 96.034 83.045 335990000 24696000 21017000 26257000 0 0 0 28182000 26605000 28804000 0 1019600 1045200 29177000 27403000 20109000 0 0 0 27815000 39800000 33236000 827940 0 0 15820 186 15317 297181;297182;297183;297184;297185;297186;297187;297188;297189;297190;297191;297192;297193;297194;297195 182410 182410 1 NPVVVSAVQNQLAK Unmodified 1465.8253 0.8252771 1553 P42588 patA Putrescine aminotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 30.818 29.372 2 7.2523E-11 14180 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 165.18 162.51 62546000 5000300 7691200 4503700 0 0 0 15594000 13763000 13888000 0 0 0 0 0 0 0 0 0 0 0 2105700 0 0 0 15821 1553 15318 297196;297197;297198;297199;297200;297201;297202 182411;182412 182411 2 NPYLTYAR Unmodified 996.50288 0.50288033 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.991 21.804 2 1.6486E-05 8990 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 177.71 153.08 960240000 55081000 48018000 46035000 9267000 8554400 7062000 68780000 64159000 69323000 26721000 24994000 25766000 57900000 53380000 55935000 16842000 13353000 13351000 85574000 86959000 74389000 21016000 14589000 13185000 15822 1185 15319 297203;297204;297205;297206;297207;297208;297209;297210;297211;297212;297213;297214;297215;297216;297217;297218;297219;297220;297221;297222;297223;297224;297225;297226 182413;182414;182415;182416;182417;182418;182419;182420;182421;182422;182423;182424;182425;182426;182427;182428;182429;182430;182431 182423 19 NQAILPLK Unmodified 895.5491 0.54910224 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.758 24.677 2 0.01425 10367 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 72.138 59.707 1333100000 106540000 99209000 92266000 5299200 4961400 4513100 98379000 103240000 88739000 24198000 25868000 25994000 89582000 88696000 75875000 5477100 7448700 9739100 124270000 111200000 107570000 14769000 9514900 9748500 15823 883 15320 297227;297228;297229;297230;297231;297232;297233;297234;297235;297236;297237;297238;297239;297240;297241;297242;297243;297244;297245;297246;297247;297248;297249;297250 182432;182433;182434;182435;182436;182437;182438;182439;182440;182441;182442;182443;182444 182444 12 NQAILPLKGK Unmodified 1080.6655 0.66552898 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 17.566 17.571 3 0.095959 5157 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 33.229 28.13 14938000 0 0 0 0 0 0 0 0 0 3188500 2416800 2793600 0 0 0 0 0 0 0 0 0 3320200 1335100 1884200 15824 883 15321 297251;297252;297253;297254;297255;297256 182445;182446 182445 2 NQASNDLPN Unmodified 971.43084 0.4308376 885 P0AET2 hdeB Acid stress chaperone HdeB yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.885 15.638 2 0.0045196 5303 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 77.741 74.757 2038900000 304090000 322230000 307390000 0 0 908850 296590000 278010000 246570000 0 1267900 0 74428000 72243000 53501000 0 0 0 25738000 27131000 28834000 0 0 0 15825 885 15322 297257;297258;297259;297260;297261;297262;297263;297264;297265;297266;297267;297268;297269;297270 182447;182448;182449;182450;182451;182452;182453;182454 182447 8 NQDLGPFISHEMNR Unmodified 1656.7678 0.76783858 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.708 28.365 3 5.4117E-06 10525 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 103.76 103.23 547130000 18083000 20367000 16957000 10090000 7444100 8269600 38402000 43884000 44851000 13713000 12802000 13504000 32177000 36155000 39952000 3753500 2583500 3049800 47334000 51348000 50416000 11553000 10194000 10243000 15826 1427 15323 297271;297272;297273;297274;297275;297276;297277;297278;297279;297280;297281;297282;297283;297284;297285;297286;297287;297288;297289;297290;297291;297292;297293;297294 182455;182456;182457;182458;182459;182460;182461;182462;182463;182464;182465;182466;182467;182468;182469;182470;182471;182472;182473;182474;182475 182461 21 NQFLDASLTLAR Unmodified 1347.7147 0.71466402 581 P0AA97 yaeQ Uncharacterized protein YaeQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.78 41.128 2 9.2862E-06 19265 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 155.42 140.48 132220000 8933900 8910800 5885200 0 0 0 14621000 12324000 12658000 0 0 0 11530000 9018300 9154200 0 0 0 12692000 13765000 12728000 0 0 0 15827 581 15324 297295;297296;297297;297298;297299;297300;297301;297302;297303;297304;297305;297306 182476;182477;182478 182477 3 NQGDHLLHSTR Unmodified 1276.6272 0.627246 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 11.023 11.604 2;3 2.0364E-26 2788 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 255.11 247.46 14729000000 1094300000 1114400000 1066000000 80148000 60212000 56962000 1532800000 1444200000 1480800000 189910000 158420000 148700000 881820000 885470000 764360000 22031000 19258000 17039000 1435600000 795380000 1331700000 55312000 51910000 42340000 15828 293 15325 297307;297308;297309;297310;297311;297312;297313;297314;297315;297316;297317;297318;297319;297320;297321;297322;297323;297324;297325;297326;297327;297328;297329;297330;297331;297332;297333;297334;297335;297336;297337;297338;297339;297340;297341;297342;297343;297344;297345;297346;297347;297348;297349;297350;297351 182479;182480;182481;182482;182483;182484;182485;182486;182487;182488;182489;182490;182491;182492;182493;182494;182495;182496;182497;182498;182499;182500;182501;182502;182503;182504;182505;182506;182507;182508;182509;182510;182511;182512;182513;182514;182515 182491 37 NQGDHLLHSTRK Unmodified 1404.7222 0.72220902 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 2 1 1 2 9.3042 9.7382 3;4 0.0019208 2023 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 71.268 70.739 136750000 0 0 0 1238600 3072900 1106600 0 0 0 42980000 23639000 26684000 0 0 0 0 0 0 0 0 0 10612000 11068000 16351000 15829 293 15326 297352;297353;297354;297355;297356;297357;297358;297359;297360;297361;297362;297363 182516;182517;182518;182519;182520;182521 182518 6 NQGLFFPHDLPEFSLTEIDEMLK Unmodified 2719.3204 0.32035445 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 1 2 1 55.308 53.892 3 1.7496E-10 26630 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.98 126.29 894480000 146920000 126350000 135300000 0 0 0 0 0 0 0 0 0 77469000 62156000 70859000 0 0 0 85449000 108090000 81889000 0 0 0 15830 52 15327 297364;297365;297366;297367;297368;297369;297370;297371;297372;297373;297374;297375;297376;297377 182522;182523;182524;182525;182526;182527;182528;182529 182526 8 NQGLSMSSDEHADEYSR Unmodified 1924.7857 0.78573307 1715 P67826 cutC Copper homeostasis protein CutC yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.684 17.441 3 1.4215E-06 6218 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 94.203 94.203 111980000 9228000 8419400 9096200 0 0 0 10074000 10222000 10324000 0 0 0 7452300 9378400 9590700 0 0 0 8895700 10460000 8834800 0 0 0 15831 1715 15328 297378;297379;297380;297381;297382;297383;297384;297385;297386;297387;297388;297389 182530;182531;182532;182533;182534 182531 5 NQHATVLIR Unmodified 1050.5934 0.59342667 249 P0A6I6 coaD Phosphopantetheine adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS 1 1 12.435 13.439 3 0.050344 3732 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 46.158 12.896 42466000 0 0 0 0 0 0 0 0 0 0 0 0 25673000 16792000 0 0 0 0 0 0 0 0 0 0 15832 249 15329 297390;297391 182535;182536 182535 0 NQIADLVGADPR Unmodified 1267.6521 0.65206377 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 1 31.984 30.469 2;3 1.9285E-06 14222 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.25 134.1 2652300000 279990000 273440000 256480000 10436000 10511000 11328000 222280000 216280000 215170000 5258400 4362600 3569600 146510000 124830000 110710000 0 0 0 227520000 267680000 238180000 9160100 10131000 8456000 15833 228 15330 297392;297393;297394;297395;297396;297397;297398;297399;297400;297401;297402;297403;297404;297405;297406;297407;297408;297409;297410;297411;297412;297413;297414;297415;297416;297417;297418;297419;297420;297421;297422;297423;297424;297425;297426;297427;297428;297429 182537;182538;182539;182540;182541;182542;182543;182544;182545;182546;182547;182548;182549;182550;182551;182552;182553;182554;182555;182556;182557;182558 182555 22 NQIFLINER Unmodified 1145.6193 0.61930707 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.404 32.153 2 0.00017574 15326 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.69 65.207 94936000 14363000 14377000 12797000 0 0 0 7323400 7497900 10347000 1780300 0 0 3328400 4190400 2804700 2380100 1570500 1483500 3244400 3169700 4278700 0 0 0 15834 326 15331 297430;297431;297432;297433;297434;297435;297436;297437;297438;297439;297440;297441;297442;297443;297444;297445 182559;182560;182561;182562 182561 4 NQIIGVLDIDSTVFGR Unmodified 1745.9312 0.93119874 1846 P76270 msrC Free methionine-R-sulfoxide reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 54.484 53.044 2 2.7088E-10 25099 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 149.41 143.57 408240000 53472000 51201000 34687000 0 591670 0 28494000 26366000 20265000 0 0 0 29718000 24958000 24544000 0 0 0 41773000 44064000 28109000 0 0 0 15835 1846 15332 297446;297447;297448;297449;297450;297451;297452;297453;297454;297455;297456;297457;297458 182563;182564;182565;182566;182567;182568;182569;182570;182571;182572;182573;182574 182573 4 NQILNLTTDNANILLQIDNAR Unmodified 2366.2554 0.25538642 13 CON__P13645 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 2 2 2 53.661 52.603 2;3 1.6924E-34 20966 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 269.4 264.93 175140000 0 0 0 7962000 10819000 9717300 0 0 0 0 0 7887700 0 0 0 7526900 7639500 8847000 0 0 0 43359000 33671000 37713000 + 15836 13 15333 297459;297460;297461;297462;297463;297464;297465;297466;297467;297468;297469;297470;297471;297472 182575;182576;182577;182578;182579;182580;182581 182580 7 NQILTMGCYGIGVTR Unmodified 1681.828 0.827996 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 41.295 39.65 2;3 1.3392E-11 19684 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 209.19 200.61 1526600000 133590000 122130000 108420000 0 0 0 115040000 117750000 117050000 0 0 0 129980000 125600000 102630000 0 0 0 146610000 160190000 147630000 0 0 0 15837 1120 15334 297473;297474;297475;297476;297477;297478;297479;297480;297481;297482;297483;297484;297485;297486;297487;297488;297489;297490;297491;297492;297493;297494;297495 182582;182583;182584;182585;182586;182587;182588;182589;182590;182591;182592;182593;182594;182595;182596 182583 15 NQIPWINSTNYSVEEIATK Unmodified 2206.0906 0.090612506 414 P0A8A4 ppsR Phosphoenolpyruvate synthase regulatory protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.677 46.262 2 2.0205E-06 22693 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.22 112.86 62392000 10389000 9793400 8993300 0 0 0 3503300 6019400 2857000 0 0 0 3791900 3147700 2396600 0 0 0 3144600 3581900 4774300 0 0 0 15838 414 15335 297496;297497;297498;297499;297500;297501;297502;297503;297504;297505;297506;297507 182597 182597 1 NQIQVNR Unmodified 870.46716 0.46716353 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.606 12.37 2 0.00087141 3312 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 142.63 135.22 464080000 131910000 116620000 134610000 0 0 0 0 0 0 0 0 0 13927000 9520200 13903000 594040 0 0 25347000 17653000 0 0 0 0 15839 26 15336 297508;297509;297510;297511;297512;297513;297514;297515;297516 182598;182599;182600 182598 3 NQITLPVILK Unmodified 1137.7121 0.71214483 708 P0AC84 gloB Hydroxyacylglutathione hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.34 41.675 2 0.0010965 20170 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 86.744 73.707 515280000 79337000 84168000 80733000 445760 0 385190 53137000 48162000 49318000 600910 519610 0 16579000 15503000 12934000 0 0 0 20139000 27255000 26061000 0 0 0 15840 708 15337 297517;297518;297519;297520;297521;297522;297523;297524;297525;297526;297527;297528;297529;297530;297531;297532 182601;182602;182603;182604;182605;182606;182607 182603 7 NQLEVMR Unmodified 888.44874 0.44873627 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.204 17.884 2 0.00084363 6640 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.37 107.18 2095600000 601620000 575700000 0 1155200 855800 1095400 205550000 178410000 173920000 0 0 0 56553000 51916000 55715000 0 0 0 69522000 62038000 60787000 0 0 797940 15841 195 15338 297533;297534;297535;297536;297537;297538;297539;297540;297541;297542;297543;297544;297545;297546;297547 182608;182609;182610;182611;182612;182613 182609 5 NQLGSTIIVLATVVEGK Unmodified 1740.9986 0.99855002 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 55.034 53.548 2;3 9.7205E-12 26349 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 156 153.53 2337500000 172270000 173360000 154770000 0 0 0 195630000 214890000 176990000 3945600 2260400 3888900 177440000 173530000 167850000 0 0 0 249510000 251690000 219420000 0 0 0 15842 59 15339 297548;297549;297550;297551;297552;297553;297554;297555;297556;297557;297558;297559;297560;297561;297562;297563;297564;297565;297566;297567;297568;297569;297570;297571;297572;297573;297574;297575;297576 182614;182615;182616;182617;182618;182619;182620;182621;182622;182623;182624;182625;182626;182627;182628;182629;182630;182631;182632;182633;182634;182635;182636 182622 23 NQLLAEAAK Unmodified 956.5291 0.52909508 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.456 17.901 2 0.0039646 6093 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 79.713 27.076 342240000 7023400 10630000 8786000 4818900 2916900 3903500 30914000 29759000 25609000 9975300 9467400 9678700 20967000 21469000 18853000 1778900 1847400 2605700 31042000 34274000 35636000 7823000 7198500 5265900 15843 1365 15340 297577;297578;297579;297580;297581;297582;297583;297584;297585;297586;297587;297588;297589;297590;297591;297592;297593;297594;297595;297596;297597;297598;297599;297600 182637;182638;182639;182640;182641;182642;182643;182644;182645;182646;182647;182648;182649;182650 182649 11 NQLPELIEQINASGYGLTLGVHTR Unmodified 2622.3766 0.37656419 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.57 51.466 3 2.2678E-30 20947 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 184.45 177.46 817280000 22953000 25690000 19011000 31571000 18976000 20885000 0 0 0 60625000 49488000 42060000 21244000 22819000 18008000 22113000 28553000 34726000 65957000 65911000 71517000 60777000 59488000 54907000 15844 215 15341 297601;297602;297603;297604;297605;297606;297607;297608;297609;297610;297611;297612;297613;297614;297615;297616;297617;297618;297619;297620;297621 182651;182652;182653;182654;182655;182656;182657;182658;182659;182660;182661;182662 182654 12 NQLRDEVDR Unmodified 1143.5632 0.56324876 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 11.93 12.537 2;3 0.00014417 3247 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 151.44 105.72 2182900000 188280000 191890000 179140000 2777900 3089500 2528600 181140000 155380000 159700000 8574500 8161900 7478400 176280000 203210000 160590000 16238000 6006700 4777100 159740000 168040000 184580000 4434300 4935700 5930500 15845 674 15342 297622;297623;297624;297625;297626;297627;297628;297629;297630;297631;297632;297633;297634;297635;297636;297637;297638;297639;297640;297641;297642;297643;297644;297645;297646 182663;182664;182665;182666;182667;182668;182669 182669 4 NQLTAAALFPLYVNAAAK Unmodified 1875.0254 0.025433475 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 53.533 52.094 2;3 1.4599E-22 25731 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 196.11 191.59 296510000 59374000 56590000 54139000 0 0 0 19631000 20730000 26453000 0 0 0 7940200 8384000 7821300 0 0 0 12513000 12821000 10117000 0 0 0 15846 1091 15343 297647;297648;297649;297650;297651;297652;297653;297654;297655;297656;297657;297658;297659;297660;297661;297662;297663;297664;297665;297666;297667;297668;297669;297670 182670;182671;182672;182673;182674;182675 182670 6 NQLTFNQIALEEAGR Unmodified 1702.8638 0.86384745 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 2 2 1 1 1 2 2 2 2 2 2 2 2 2 39.517 38.113 2;3 4.2892E-20 13226 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 255.3 242.73 688830000 59640000 52897000 42843000 0 0 0 51798000 58577000 56530000 1116000 1992000 1784700 44967000 37996000 41970000 15226000 10340000 11341000 66283000 66394000 67140000 0 0 0 15847 37 15344 297671;297672;297673;297674;297675;297676;297677;297678;297679;297680;297681;297682;297683;297684;297685;297686;297687;297688;297689;297690;297691;297692;297693;297694;297695;297696;297697;297698;297699;297700;297701 182676;182677;182678;182679;182680;182681;182682;182683 182678 5 NQLTSDLLDEWAK Unmodified 1531.7518 0.75183739 1708 P66948 bepA Beta-barrel assembly-enhancing protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 49.308 48.01 2 2.3087E-07 23405 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.62 132.63 164110000 28140000 22745000 21834000 2838500 3971300 3170600 0 0 0 0 0 1707800 12883000 9315200 9401200 0 0 0 13808000 19819000 14472000 0 0 0 15848 1708 15345 297702;297703;297704;297705;297706;297707;297708;297709;297710;297711;297712;297713;297714 182684;182685;182686;182687;182688;182689;182690;182691;182692 182684 9 NQLTSNQSILMNLVDGPFKK Unmodified 2246.1729 0.17290235 1028 P0AGL5 ratA Ribosome association toxin RatA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.641 49.16 3 5.3107E-05 19631 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 78.794 77.367 59304000 0 0 0 0 0 0 0 0 0 14192000 9865500 9933100 0 0 0 0 0 0 0 0 0 7127500 8726400 9459700 15849 1028 15346 297715;297716;297717;297718;297719;297720 182693;182694;182695 182695 3 NQLVVSVPSGNFGDLTAGLLAK Unmodified 2199.1899 0.18993262 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 54.286 52.854 2;3 6.8115E-15 26055 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142.91 137.23 564570000 74355000 68153000 67568000 0 0 0 15655000 17224000 19288000 0 0 0 40894000 37776000 43683000 0 0 0 59906000 67507000 52556000 0 0 0 15850 52 15347 297721;297722;297723;297724;297725;297726;297727;297728;297729;297730;297731;297732;297733;297734;297735;297736;297737;297738;297739;297740;297741;297742 182696;182697;182698;182699;182700;182701;182702;182703;182704 182700 5 NQNLLVTK Unmodified 928.53418 0.53418046 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 16.525 17.247 1;2 0.0066875 6072 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.568 65.474 762420000 66845000 87817000 72307000 0 0 0 94149000 73267000 69292000 0 1069600 0 51585000 50690000 37071000 0 0 0 55245000 52220000 50866000 0 0 0 15851 29 15348 297743;297744;297745;297746;297747;297748;297749;297750;297751;297752;297753;297754;297755;297756;297757;297758;297759;297760;297761;297762;297763;297764;297765;297766;297767 182705;182706;182707 182706 2 NQPELSEDTIKK Unmodified 1400.7147 0.7147236 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 14.067 14.927 2;3 0.00014164 4773 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 90.827 85.046 519580000 32621000 23214000 29536000 0 0 0 65607000 56358000 54542000 0 0 0 37320000 35697000 32093000 0 0 0 54554000 48793000 49250000 0 0 0 15852 43 15349 297768;297769;297770;297771;297772;297773;297774;297775;297776;297777;297778;297779;297780;297781;297782;297783;297784;297785;297786;297787;297788;297789 182708;182709;182710;182711;182712;182713;182714;182715;182716;182717;182718;182719;182720;182721;182722;182723;182724;182725 182714 18 NQQGAVASR Unmodified 929.46789 0.46789181 1315 P28248 dcd Deoxycytidine triphosphate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 5.1308 6.0089 2 0.00070166 1269 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 102.51 78.99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15853 1315 15350 297790;297791;297792;297793 182726;182727;182728;182729 182727 4 NQQLPLTVSYVGQTAEGAQMK Unmodified 2262.1314 0.13143146 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 40.439 38.584 2;3 1.532E-27 18812 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.05 185.64 342160000 11909000 13524000 8067200 7639600 8379400 8316400 17733000 16119000 17552000 18196000 14881000 11827000 20815000 22884000 17090000 0 0 0 35105000 34807000 32489000 8655600 7643900 8530000 15854 1854 15351 297794;297795;297796;297797;297798;297799;297800;297801;297802;297803;297804;297805;297806;297807;297808;297809;297810;297811;297812;297813;297814;297815;297816;297817;297818;297819;297820;297821;297822;297823;297824;297825;297826;297827;297828;297829;297830;297831 182730;182731;182732;182733;182734;182735;182736;182737;182738;182739;182740;182741;182742 182739 13 NQQVFYIGTNQPEVLTEIR Unmodified 2248.1488 0.14879609 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 1 48.145 46.692 2;3 6.367E-46 23096 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 331.1 317.7 241920000 10574000 8601700 11689000 0 0 0 37062000 31584000 29415000 12036000 10798000 16293000 12596000 4867300 11113000 0 1003000 0 16842000 13660000 11241000 0 0 2542900 15855 122 15352 297832;297833;297834;297835;297836;297837;297838;297839;297840;297841;297842;297843;297844;297845;297846;297847;297848;297849;297850;297851;297852;297853;297854;297855;297856;297857;297858;297859;297860;297861;297862 182743;182744;182745;182746;182747;182748;182749;182750;182751;182752;182753;182754;182755 182750 11 NQQVFYIGTNQPEVLTEIRR Unmodified 2404.2499 0.24990712 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 41.184 39.466 3 2.17E-30 16064 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 217.11 214.42 136840000 0 0 0 7385400 5060100 4795700 0 0 0 31616000 27433000 28866000 0 0 0 4894600 4477000 0 0 0 0 7293100 9240200 5784400 15856 122 15353 297863;297864;297865;297866;297867;297868;297869;297870;297871;297872;297873 182756;182757;182758;182759;182760;182761;182762;182763;182764 182756 9 NQRPELWHNYNGQINK Unmodified 2009.982 0.98200553 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 18.447 18.994 3;4 3.1475E-10 7177 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.75 133.91 427940000 22165000 32848000 28085000 1676600 1767500 2135900 33353000 34515000 25497000 936990 1067500 1283000 25612000 20582000 16432000 0 0 0 71391000 53963000 54631000 0 0 0 15857 1169 15354 297874;297875;297876;297877;297878;297879;297880;297881;297882;297883;297884;297885;297886;297887;297888;297889;297890;297891;297892;297893;297894;297895;297896;297897;297898;297899;297900;297901;297902;297903;297904;297905;297906 182765;182766;182767;182768;182769;182770;182771;182772;182773;182774;182775;182776;182777;182778;182779 182769 15 NQRPGRNPK Unmodified 1065.5792 0.57917359 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 9.1736 9.229 3 0.03162 1624 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 53.968 45.01 27075000 0 0 0 0 0 0 0 0 0 2015900 2839200 3027200 0 0 0 6550600 5367700 7274800 0 0 0 0 0 0 15858 290 15355 297907;297908;297909;297910;297911;297912 182780;182781 182781 2 NQSALSSSIER Unmodified 1190.5891 0.58912916 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 15.625 16.455 2 3.6305E-05 5647 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.01 119.48 375460000 109280000 123300000 117220000 8772600 8969700 7916000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15859 96 15356 297913;297914;297915;297916;297917;297918;297919 182782;182783;182784;182785;182786;182787 182787 6 NQSDPTMFNK Unmodified 1180.5183 0.5182724 786 P0ADF8 ilvN Acetolactate synthase isozyme 1 small subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 16.865 17.564 2 0.0043201 6307 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.897 58.481 153570000 48508000 52884000 52178000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15860 786 15357 297920;297921;297922 182788;182789;182790 182788 3 NQSSDWQQYNIK Unmodified 1509.6848 0.68482046 1637 P61316 lolA Outer-membrane lipoprotein carrier protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 25.457 24.355 2 1.2073E-08 10720 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 174.02 174.02 575050000 52791000 44525000 44236000 0 0 0 63731000 69778000 67548000 0 0 0 46403000 43526000 43373000 0 0 0 43956000 55183000 0 0 0 0 15861 1637 15358 297923;297924;297925;297926;297927;297928;297929;297930;297931;297932;297933 182791;182792;182793;182794;182795;182796 182794 6 NQTLDECLDVIIESAHSR Unmodified 2098.9953 0.99533191 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.054 44.46 3 9.2466E-18 22035 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.14 130.64 894330000 97131000 127200000 89847000 5409800 4331700 4939000 85315000 72040000 61856000 1451400 1990000 0 53339000 51380000 45958000 0 0 0 65004000 65552000 61591000 0 0 0 15862 839 15359 297934;297935;297936;297937;297938;297939;297940;297941;297942;297943;297944;297945;297946;297947;297948;297949;297950 182797;182798;182799;182800;182801;182802;182803;182804;182805;182806;182807;182808;182809;182810;182811 182798 15 NQVALVSQNVHLFNDTVANNIAYAR Unmodified 2770.4151 0.41507496 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.248 43.75 3 1.6706E-30 21692 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 184.95 175.11 155710000 0 0 4681500 2304300 2774100 3397300 11257000 11162000 8874300 7180900 9383900 6949600 11677000 7990600 10330000 3474300 0 2072800 13877000 12326000 12318000 5424100 5134400 3119200 15863 1631 15360 297951;297952;297953;297954;297955;297956;297957;297958;297959;297960;297961;297962;297963;297964;297965;297966;297967;297968;297969;297970;297971 182812;182813;182814;182815;182816;182817;182818 182814 7 NQVDINEIQTAVENQLMSGPYK Unmodified 2490.2061 0.20605297 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.394 52.931 2 6.4475E-53 26214 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 262.66 253.86 139360000 0 0 0 0 0 0 11708000 17899000 10410000 0 0 0 17962000 14849000 17952000 0 0 0 17826000 13364000 17394000 0 0 0 15864 1323 15361 297972;297973;297974;297975;297976;297977;297978;297979;297980 182819 182819 1 NQVTAFIGPSGCGK Unmodified 1434.6925 0.69254837 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 2 2 2 1 1 2 1 1 1 1 2 2 2 27.395 26.123 2;3 9.1501E-11 8693 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 202.31 184.79 1677800000 3377900 0 0 2893800 2189900 2959500 67674000 68970000 65867000 176300000 157980000 155300000 69388000 60588000 60093000 39256000 29425000 24347000 104430000 90033000 99060000 141210000 130530000 125970000 15865 594 15362 297981;297982;297983;297984;297985;297986;297987;297988;297989;297990;297991;297992;297993;297994;297995;297996;297997;297998;297999;298000;298001;298002;298003;298004;298005;298006;298007;298008;298009;298010;298011 182820;182821;182822;182823;182824;182825;182826;182827;182828;182829;182830;182831;182832;182833;182834;182835;182836;182837;182838 182820 19 NQVVGTINFQLDGK Unmodified 1531.7995 0.79945628 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.316 36.766 2 4.0336E-06 14269 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 117.09 111.25 40695000 0 0 0 2088100 1806700 1725900 0 0 0 5950800 5118800 5492000 0 0 0 1404700 963470 1575100 0 0 0 5397300 4053200 5118600 15866 844 15363 298012;298013;298014;298015;298016;298017;298018;298019;298020;298021;298022;298023 182839;182840;182841 182839 3 NQWAALR Unmodified 857.45079 0.45078518 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.364 21.562 2 0.0022284 8595 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 116 105.02 256540000 21760000 21162000 17016000 0 0 0 18181000 23798000 21765000 0 0 1978400 17405000 13843000 16224000 1954000 1368000 1593800 29616000 26507000 22374000 0 0 0 15867 248 15364 298024;298025;298026;298027;298028;298029;298030;298031;298032;298033;298034;298035;298036;298037;298038;298039 182842;182843;182844;182845;182846;182847;182848;182849;182850;182851;182852 182845 11 NQWFGTITAR Unmodified 1192.5989 0.59890598 518 P0A9G8 modE Transcriptional regulator ModE yes yes 0 0 0 By matching By MS/MS 1 1 34.532 33.277 2 0.037368 15686 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 57.96 54.412 35871000 19651000 0 16220000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15868 518 15365 298040;298041 182853 182853 0 NQYYGITAGPAYR Unmodified 1472.7048 0.70482762 483 P0A917 ompX Outer membrane protein X yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.88 27.573 2 4.5551E-08 10645 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 156.83 151.05 342990000 13174000 13097000 9909600 7688800 8240600 7071100 11424000 12567000 12184000 40518000 39336000 31122000 6024100 7639100 6964100 12337000 6774400 6261300 14523000 14728000 14929000 15928000 13210000 17335000 15869 483 15366 298042;298043;298044;298045;298046;298047;298048;298049;298050;298051;298052;298053;298054;298055;298056;298057;298058;298059;298060;298061;298062;298063;298064;298065 182854;182855;182856;182857;182858;182859;182860;182861;182862;182863;182864;182865;182866;182867;182868;182869;182870;182871;182872;182873 182856 11 NRDELLALIR Unmodified 1211.6986 0.69862003 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 35.628 33.956 2;3 5.617E-05 16239 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128.91 111.47 860570000 93452000 102710000 80035000 11157000 9902900 11707000 92254000 87564000 90159000 3984900 0 1809300 38983000 38228000 33191000 0 0 0 50985000 60983000 53462000 0 0 0 15870 839 15367 298066;298067;298068;298069;298070;298071;298072;298073;298074;298075;298076;298077;298078;298079;298080;298081;298082;298083;298084;298085;298086;298087;298088;298089;298090;298091;298092;298093;298094;298095;298096;298097;298098 182874;182875;182876;182877;182878;182879;182880;182881;182882;182883;182884;182885;182886 182876 12 NRIAGLGK Unmodified 827.49774 0.49773538 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 15.877 15.883 2 0.12182 4203 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 55.441 31.469 16307000 0 0 0 0 0 0 0 0 0 0 1579100 0 0 0 0 4458200 4609300 5660100 0 0 0 0 0 0 15871 1323 15368 298099;298100;298101;298102 182887 182887 1 NRPTFAYGR Unmodified 1080.5465 0.54647648 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 13.829 14.403 2;3 1.0404E-05 4394 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.23 154.99 341550000 0 0 0 0 0 0 49237000 38294000 23341000 16180000 11518000 11932000 28714000 30760000 27516000 0 0 0 26767000 28021000 29518000 6113000 6352100 7289100 15872 1739 15369 298103;298104;298105;298106;298107;298108;298109;298110;298111;298112;298113;298114;298115;298116;298117;298118;298119;298120;298121;298122;298123;298124;298125;298126;298127;298128;298129;298130;298131 182888;182889;182890;182891;182892;182893;182894;182895;182896;182897;182898;182899 182896 11 NRVNQLGVAEPVVQR Unmodified 1677.9275 0.92745076 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 21.439 21.224 3 4.9899E-07 7204 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 118.52 112.98 29529000 0 0 0 0 3027400 4814500 0 0 0 3489200 4799100 3463900 0 0 0 0 0 0 0 0 0 3063200 2810800 4061300 15873 997 15370 298132;298133;298134;298135;298136;298137;298138;298139;298140 182900;182901;182902;182903 182900 4 NSAHTLAK Unmodified 840.44537 0.44536545 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS 1 4.7677 5.6722 2 0.0079908 1053 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 82.426 74.085 144650000 0 0 0 0 0 0 0 0 144650000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15874 1341 15371 298141 182904 182904 1 NSDIAAK Unmodified 717.36572 0.36571815 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 7.1747 7.9853 2 0.15034 1681 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 44.692 12.579 83508000 0 17857000 15328000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16749000 15575000 17998000 0 0 0 15875 696 15372 298142;298143;298144;298145;298146 182905 182905 1 NSDIQPTVESLK Unmodified 1329.6776 0.67760981 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 21.888 21.394 2;3 1.1699E-11 9968 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 185.18 169.3 709210000 184680000 153520000 151230000 0 0 0 22796000 63570000 0 0 0 0 0 26539000 31602000 0 0 0 41366000 33903000 0 0 0 0 15876 887 15373 298147;298148;298149;298150;298151;298152;298153;298154;298155 182906;182907;182908;182909;182910;182911;182912;182913 182911 8 NSEAAWGVAQEAIAIGAK Unmodified 1784.9057 0.90571227 1786 P75874 yccU Uncharacterized protein YccU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 46.041 44.554 2;3 1.6608E-17 21577 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 174.39 165.98 759930000 96340000 93899000 80493000 0 846120 0 90631000 80557000 86562000 0 0 0 36958000 35886000 35486000 0 0 0 39973000 41145000 41158000 0 0 0 15877 1786 15374 298156;298157;298158;298159;298160;298161;298162;298163;298164;298165;298166;298167;298168;298169;298170;298171;298172;298173;298174;298175;298176;298177;298178;298179;298180 182914;182915;182916;182917;182918;182919;182920;182921;182922;182923;182924;182925;182926;182927;182928 182925 15 NSEAGIDVHK Unmodified 1068.52 0.51998696 1974 Q47150 dinJ Antitoxin DinJ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 11.234 12.079 2 0.00029148 2321 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 112.84 112.32 35467000 5408900 0 0 9629500 6956900 7554500 0 0 0 3174900 0 0 0 2742600 0 0 0 0 0 0 0 0 0 0 15878 1974 15375 298181;298182;298183;298184;298185;298186 182929;182930;182931 182931 3 NSEGLTQVFNDVHK Unmodified 1586.7689 0.76888444 1532 P39371 nanM N-acetylneuraminate epimerase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.129 27.854 3 0.00049426 12906 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.771 49.382 168090000 35287000 27894000 29729000 0 0 0 13368000 11526000 15933000 0 0 0 8079100 0 8698900 0 0 0 8210400 7302500 2065400 0 0 0 15879 1532 15376 298187;298188;298189;298190;298191;298192;298193;298194;298195;298196;298197 182932 182932 1 NSETLENFSEK Unmodified 1296.5834 0.58337508 942 P0AFH6 oppC Oligopeptide transport system permease protein OppC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.511 20.733 2 4.3252E-14 8125 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 204.52 204.52 304940000 48489000 49170000 51357000 7840300 6424000 6162000 13229000 11515000 12850000 4593300 3087700 2994600 11825000 14225000 11806000 0 0 0 15302000 14000000 15986000 1621200 1028600 1436500 15880 942 15377 298198;298199;298200;298201;298202;298203;298204;298205;298206;298207;298208;298209;298210;298211;298212;298213;298214;298215;298216;298217;298218 182933;182934;182935;182936;182937;182938;182939;182940;182941;182942;182943;182944 182941 12 NSETLENFSEKLEVEGR Unmodified 1979.9436 0.94361392 942 P0AFH6 oppC Oligopeptide transport system permease protein OppC yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 33.618 31.999 2 8.996E-07 11096 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 109.22 106.35 6583600 0 0 0 2391400 2180300 2011900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15881 942 15378 298219;298220;298221 182945 182945 1 NSGDAPAAAPGNNETTEPVGTTK Unmodified 2198.0087 0.0087333705 1695 P64604 mlaD Probable phospholipid ABC transporter-binding protein MlaD yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 16.41 17.189 2;3 6.5293E-16 5749 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 199.65 199.57 180550000 4620400 0 0 0 0 0 16584000 14074000 16811000 0 0 0 22130000 18785000 23348000 0 0 0 19827000 21725000 22644000 0 0 0 15882 1695 15379 298222;298223;298224;298225;298226;298227;298228;298229;298230;298231;298232;298233;298234;298235;298236;298237;298238;298239;298240 182946;182947;182948;182949;182950;182951;182952;182953;182954;182955;182956;182957;182958;182959;182960;182961;182962 182959 17 NSGPDKLTLQR Unmodified 1227.6571 0.65714914 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 2 2 2 2 1 14.911 14.98 2;3 6.1427E-05 3796 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 110.66 100.34 98108000 0 0 0 0 0 0 0 0 0 9746800 9899800 4026100 0 0 0 23809000 17864000 21231000 0 0 0 4017200 3964300 3550200 15883 297 15380 298241;298242;298243;298244;298245;298246;298247;298248;298249;298250;298251;298252;298253;298254;298255;298256 182963;182964;182965;182966;182967;182968;182969;182970 182968 8 NSGTEPTIIHYLETPPTR Unmodified 2025.0167 0.016719282 640 P0AB96 arsC Arsenate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.883 36.209 3 5.3059E-06 16721 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 88.56 83.242 197480000 20736000 18240000 17636000 0 0 0 15919000 14821000 14215000 0 0 0 15540000 10686000 12739000 0 0 0 19378000 17856000 19716000 0 0 0 15884 640 15381 298257;298258;298259;298260;298261;298262;298263;298264;298265;298266;298267;298268 182971;182972;182973;182974;182975;182976;182977;182978;182979;182980;182981 182981 10 NSGYQNYFVQGANLR Unmodified 1729.8172 0.81723161 1536 P39401 mdoB Phosphoglycerol transferase I yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.173 33.56 2 1.4949E-07 15495 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.52 111.8 45217000 0 2159700 0 0 0 870960 6080100 0 0 0 0 1472800 3519200 3087200 3910900 0 0 0 6173800 9787300 5518200 1140300 1496500 0 15885 1536 15382 298269;298270;298271;298272;298273;298274;298275;298276;298277;298278;298279;298280 182982;182983;182984;182985;182986;182987 182985 2 NSHSVIITPGYGMAVAQAQYPVAEITEK Unmodified 2973.4906 0.49060767 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.71 42.992 3 1.085E-22 17538 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 163.39 158.1 707590000 22634000 21746000 20009000 5102500 5403600 5456300 71192000 68420000 77998000 30065000 25111000 28448000 50607000 47049000 40720000 0 0 0 55177000 55128000 51491000 8274800 6810700 10746000 15886 633 15383 298281;298282;298283;298284;298285;298286;298287;298288;298289;298290;298291;298292;298293;298294;298295;298296;298297;298298;298299;298300;298301 182988;182989;182990;182991;182992;182993;182994;182995;182996;182997;182998;182999;183000;183001;183002 182988 15 NSIENHFDTSFELEAMLEK Unmodified 2253.026 0.025963339 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 1 2 48.701 47.362 3 2.4095E-14 22802 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 124.63 123.06 215280000 12964000 13492000 16522000 0 0 0 26905000 18356000 24731000 0 0 0 16377000 18600000 15659000 0 0 0 21647000 14274000 15758000 0 0 0 15887 876 15384 298302;298303;298304;298305;298306;298307;298308;298309;298310;298311;298312;298313;298314;298315;298316;298317;298318;298319;298320;298321;298322;298323 183003;183004;183005;183006;183007;183008;183009;183010;183011;183012;183013;183014;183015;183016 183007 14 NSKIEISELNR Unmodified 1301.6939 0.69392858 11 CON__P04264 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 1 18.641 18.733 2;3 2.7012E-08 5915 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 147.62 28.289 119140000 0 0 0 2957500 6768300 961930 0 0 0 32774000 28421000 22739000 0 0 0 0 0 0 0 0 0 10583000 10253000 3678500 + 15888 11 15385 298324;298325;298326;298327;298328;298329;298330;298331;298332;298333;298334;298335;298336;298337;298338 183017;183018;183019;183020;183021;183022;183023;183024;183025;183026 183017 10 NSLDALCAR Unmodified 1018.4866 0.48657834 79 P03007 dnaQ DNA polymerase III subunit epsilon yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.559 21.75 2 0.023112 8872 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.207 49.543 91477000 7955500 8577800 7370200 606770 651940 452070 3229000 5054600 5551000 0 0 0 5110300 4733300 5038900 7006500 4934400 6964600 0 6515400 8274800 1312600 1103500 1033400 15889 79 15386 298339;298340;298341;298342;298343;298344;298345;298346;298347;298348;298349;298350;298351;298352;298353;298354;298355;298356;298357;298358 183027;183028;183029 183029 0 NSLMITLSQSGETADTLAGLR Unmodified 2177.0998 0.099796984 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 51.1 49.698 3 8.9726E-07 24311 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.804 87.848 202080000 0 0 0 0 0 0 7135600 5635800 180060000 0 0 0 0 0 0 0 0 0 0 0 9250000 0 0 0 15890 1137 15387 298359;298360;298361;298362 183030 183030 1 NSLYLAANGYDVDAWDK Unmodified 1913.8796 0.8795571 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 45.582 44.219 2 2.0183E-08 20611 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 112.42 108.56 71694000 8859000 9824600 6271900 0 0 0 6663100 0 0 0 0 0 7827900 7111700 6365900 0 0 0 5509700 7502800 5757700 0 0 0 15891 1252 15388 298363;298364;298365;298366;298367;298368;298369;298370;298371;298372 183031;183032 183032 2 NSMQGDIR Unmodified 919.41816 0.41816443 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.901 12.734 2 0.045022 3584 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.828 50.522 228340000 29194000 27750000 25129000 0 0 0 14211000 16006000 14656000 0 0 0 14858000 14465000 11961000 0 0 0 18178000 20946000 20990000 0 0 0 15892 232 15389 298373;298374;298375;298376;298377;298378;298379;298380;298381;298382;298383;298384 183033;183034;183035 183034 3 NSPQVSYLR Unmodified 1062.5458 0.54580778 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.053 19.39 2 0.00031838 7575 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 116.25 108.32 230160000 0 3799000 0 468880 396910 0 22022000 21961000 17978000 14552000 12125000 12585000 4450300 4008500 4880800 0 0 0 8327800 10417000 10279000 27241000 27853000 26817000 15893 1318 15390 298385;298386;298387;298388;298389;298390;298391;298392;298393;298394;298395;298396;298397;298398;298399;298400;298401;298402 183036;183037;183038;183039 183036 4 NSPVPIGTVPIYQALEK Unmodified 1824.9986 0.99855002 1339 P30136 thiC Phosphomethylpyrimidine synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 48.475 47.118 2 0.0082501 22765 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 71.548 71.064 38168000 0 0 0 0 0 0 3305000 4493300 5214900 0 0 0 2316800 1518300 2496200 0 0 0 7085500 5415700 6322200 0 0 0 15894 1339 15391 298403;298404;298405;298406;298407;298408;298409;298410;298411 183040;183041 183041 2 NSPYVNILVAR Unmodified 1244.6877 0.68772099 95 P04846 nlpA Lipoprotein 28 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.078 35.17 2 0.025161 16860 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 56.563 44.97 76260000 0 8239900 0 1802600 1745400 1953700 5506200 8035400 8217000 4434400 3487900 2848600 2356500 0 3372000 0 0 0 7936700 6758500 5885500 1101800 1001200 1576900 15895 95 15392 298412;298413;298414;298415;298416;298417;298418;298419;298420;298421;298422;298423;298424;298425;298426;298427;298428;298429 183042 183042 1 NSQGELVGFDIDLAK Unmodified 1604.8046 0.80460124 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.402 44.912 2 1.8493E-09 21879 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.86 152 428690000 85745000 72097000 65493000 0 0 0 20627000 22283000 19925000 0 0 0 19641000 14694000 15100000 0 0 0 31802000 31629000 29655000 0 0 0 15896 887 15393 298430;298431;298432;298433;298434;298435;298436;298437;298438;298439;298440;298441 183043;183044;183045;183046;183047;183048;183049;183050;183051 183044 9 NSQGESALNLSLFLK Unmodified 1619.8519 0.85188578 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 50.783 49.603 2 2.3112E-11 20211 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 162.68 156.02 343080000 18914000 17873000 16380000 0 955390 765110 42997000 36100000 29431000 15818000 15461000 15979000 24386000 23918000 24354000 1343200 666690 0 0 27659000 30074000 0 0 0 15897 1944 15394 298442;298443;298444;298445;298446;298447;298448;298449;298450;298451;298452;298453;298454;298455;298456;298457;298458;298459;298460 183052;183053;183054;183055;183056;183057;183058;183059;183060;183061;183062 183052 11 NSQGESALNLSLFLKDPATTK Unmodified 2233.159 0.15902642 1944 P77804 ydgA Protein YdgA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 2 1 1 1 1 2 2 2 1 1 1 1 1 2 2 2 45.336 43.543 2;3 7.31E-88 17836 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 321.25 319.23 471500000 0 3740900 3107800 7828600 8982700 8503400 13463000 13728000 11873000 105890000 121960000 81039000 5824300 5003500 0 0 0 0 8141300 8237200 9870900 21052000 15925000 17335000 15898 1944 15395 298461;298462;298463;298464;298465;298466;298467;298468;298469;298470;298471;298472;298473;298474;298475;298476;298477;298478;298479;298480;298481;298482;298483;298484;298485;298486 183063;183064;183065;183066;183067;183068;183069 183063 6 NSSGGPSMGGPGFR Unmodified 1306.5724 0.57243324 1668 P64429 ypfJ Uncharacterized protein YpfJ yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.015 19.351 2 1.5446E-05 7482 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 101.95 81.434 44708000 2622800 3674800 0 959380 0 684240 0 7371300 4893400 1835500 1925400 1795300 0 2967400 2433600 0 0 0 2515100 4694300 3743500 855940 711100 1024600 15899 1668 15396 298487;298488;298489;298490;298491;298492;298493;298494;298495;298496;298497;298498;298499;298500;298501;298502;298503 183070;183071;183072 183070 3 NSTAMLTTFNEVNMK Unmodified 1699.7909 0.79094179 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.003 36.33 2 2.8694E-11 17655 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.42 154.56 217600000 23756000 18975000 18788000 0 0 0 14024000 9077200 11543000 0 0 0 12512000 9179100 10944000 0 0 0 35892000 28250000 24664000 0 0 0 15900 938 15397 298504;298505;298506;298507;298508;298509;298510;298511;298512;298513;298514;298515 183073;183074;183075 183074 3 NSTAMLTTFNEVNMKPIMDLR Unmodified 2425.1804 0.18037227 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 2 2 2 1 1 1 2 3 2 2 1 2 2 3 2 2 2 48.881 47.603 2;3 6.7266E-102 23187 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 381.5 369.71 6474700000 638720000 613020000 547980000 11331000 9865300 11852000 253590000 236430000 250710000 12386000 11695000 10018000 454010000 384360000 423610000 0 10817000 8508800 837680000 815020000 767180000 63708000 52728000 49492000 15901 938 15398 298516;298517;298518;298519;298520;298521;298522;298523;298524;298525;298526;298527;298528;298529;298530;298531;298532;298533;298534;298535;298536;298537;298538;298539;298540;298541;298542;298543;298544;298545;298546;298547;298548;298549;298550;298551;298552;298553;298554;298555;298556;298557;298558;298559 183076;183077;183078;183079;183080;183081;183082;183083;183084;183085;183086;183087;183088;183089;183090;183091;183092;183093;183094;183095;183096;183097;183098;183099;183100;183101;183102;183103;183104;183105;183106;183107;183108 183089 32 NSTAQAGCK Unmodified 935.41308 0.41307905 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 4.8406 5.6898 2 0.00022858 1280 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 124.08 78.361 255020000 35235000 38686000 25573000 0 0 0 6688800 9489200 8786200 0 0 0 17700000 19372000 17670000 0 0 0 24855000 28294000 22672000 0 0 0 15902 1119 15399 298560;298561;298562;298563;298564;298565;298566;298567;298568;298569;298570;298571 183109;183110;183111;183112;183113;183114;183115;183116;183117;183118;183119;183120;183121;183122;183123 183118 15 NSTLSALMPSETSSQISNATNGIEPPR Unmodified 2801.3502 0.35015102 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 2 2 1 1 2 1 1 1 1 45.153 43.604 3 0.0015207 21387 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 53.209 50.523 160570000 7906800 0 12801000 0 0 0 29777000 23183000 14346000 0 0 0 12273000 11875000 11181000 0 0 0 4622100 17639000 14964000 0 0 0 15903 29 15400 298572;298573;298574;298575;298576;298577;298578;298579;298580;298581;298582;298583;298584;298585 183124;183125;183126 183126 3 NSVIDEVVVCDTIPLSDEIK Unmodified 2244.1195 0.11952937 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 1 1 1 2 1 1 2 2 2 2 2 2 2 1 1 2 2 2 52.661 51.545 2;3 1.3274E-81 25327 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 328.41 290.79 2851800000 277050000 211750000 164920000 12946000 14527000 11406000 120100000 122410000 133710000 12280000 8717300 9588800 307680000 277390000 271520000 41091000 26176000 41740000 312590000 200950000 187100000 24876000 31676000 29551000 15904 300 15401 298586;298587;298588;298589;298590;298591;298592;298593;298594;298595;298596;298597;298598;298599;298600;298601;298602;298603;298604;298605;298606;298607;298608;298609;298610;298611;298612;298613;298614;298615;298616;298617;298618;298619;298620;298621;298622;298623 183127;183128;183129;183130;183131;183132;183133;183134;183135;183136;183137;183138;183139;183140;183141;183142;183143;183144;183145;183146;183147;183148;183149;183150;183151;183152;183153;183154;183155;183156;183157;183158 183138 28 NSVPNDPK Unmodified 869.4243 0.42429566 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 10.487 11.291 2 0.00034667 2590 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 144.38 140.16 5002800000 908070000 1029300000 908400000 0 0 0 403240000 351960000 350060000 0 0 0 263030000 271570000 247680000 0 0 0 0 0 269410000 0 0 0 15905 391 15402 298624;298625;298626;298627;298628;298629;298630;298631;298632;298633 183159;183160;183161;183162;183163;183164;183165;183166;183167;183168 183165 10 NTADGAAVNAMR Unmodified 1189.551 0.55096951 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 14.271 15.205 2 1.3615E-32 4714 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 234.81 199.36 51088000 0 0 0 0 0 0 0 0 0 0 0 0 23223000 0 27865000 0 0 0 0 0 0 0 0 0 15906 509 15403 298634;298635;298636;298637;298638;298639 183169;183170;183171;183172;183173;183174 183173 6 NTALLKPNNSNQLR Unmodified 1581.8587 0.8587025 1289 P27128 rfaI Lipopolysaccharide 1,3-galactosyltransferase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 15.507 15.957 3 0.010846 4574 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 47.621 47.281 22173000 0 0 0 793760 630690 960530 0 0 4143500 4331500 3205900 3386300 0 0 0 0 0 0 0 0 0 1387800 1423000 1910100 15907 1289 15404 298640;298641;298642;298643;298644;298645;298646;298647;298648;298649 183175;183176 183175 2 NTANIAK Unmodified 730.39735 0.39735263 306 P0A734 minE Cell division topological specificity factor yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 1 2 1 1 1 1 1 8.6822 9.3726 2 0.048538 2309 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 63.306 21.804 456090000 229490000 0 0 0 89174 0 41666000 26408000 30458000 0 0 0 36040000 36285000 0 2300400 4927600 0 48422000 0 0 0 0 0 15908 306 15405 298650;298651;298652;298653;298654;298655;298656;298657;298658;298659;298660;298661 183177;183178;183179;183180;183181;183182 183180 6 NTDGSLTLELEDGR Unmodified 1518.7162 0.71618016 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 34.009 32.533 2 5.0472E-35 15694 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 258.45 251.76 201320000 12990000 13454000 13894000 0 0 0 23862000 21461000 16719000 0 0 0 18334000 15715000 17292000 0 0 0 16129000 14720000 15588000 0 0 1160100 15909 128 15406 298662;298663;298664;298665;298666;298667;298668;298669;298670;298671;298672;298673;298674 183183;183184;183185;183186;183187;183188;183189;183190;183191;183192;183193 183185 11 NTDIAEELELPPVK Unmodified 1566.8141 0.8141033 721 P0ACD4 iscU Iron-sulfur cluster assembly scaffold protein IscU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 43.883 42.282 2;3 1.9566E-19 20616 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 205.49 203.26 995200000 109360000 90483000 81474000 890130 0 1695900 83210000 69153000 69514000 2092800 2177200 0 61798000 56089000 59637000 0 0 0 107240000 99792000 100600000 0 0 0 15910 721 15407 298675;298676;298677;298678;298679;298680;298681;298682;298683;298684;298685;298686;298687;298688;298689;298690;298691;298692;298693;298694;298695;298696;298697;298698;298699;298700;298701;298702 183194;183195;183196;183197;183198;183199;183200;183201;183202;183203;183204;183205;183206;183207;183208;183209;183210;183211;183212;183213;183214;183215;183216;183217;183218;183219;183220 183212 27 NTEATDDVK Unmodified 991.44582 0.44581896 1911 P77522 sufB FeS cluster assembly protein SufB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 10.417 11.169 2 0.00085745 2576 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.442 89.455 88199000 14424000 11132000 10918000 0 0 0 14668000 14540000 16259000 0 0 0 0 0 0 0 0 0 0 6256700 0 0 0 0 15911 1911 15408 298703;298704;298705;298706;298707;298708;298709 183221;183222;183223 183222 3 NTEDLSSYLK Unmodified 1168.5612 0.56118307 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.866 30.517 2 0.00023357 14408 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 118.18 110.61 1020600000 255450000 257390000 227320000 854340 1016100 1277700 2712500 0 3076000 0 0 0 21072000 14307000 15790000 0 0 0 67895000 78349000 74096000 0 0 0 15912 238 15409 298710;298711;298712;298713;298714;298715;298716;298717;298718;298719;298720;298721;298722;298723 183224;183225;183226;183227;183228;183229;183230;183231;183232 183224 9 NTELEQLINEK Unmodified 1329.6776 0.67760981 959 P0AFP6 ybgI Putative GTP cyclohydrolase 1 type 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.435 33.818 2 6.3493E-20 16613 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 239.54 218.84 1601500000 279050000 219030000 245180000 977070 0 1094000 136480000 125770000 127350000 0 1186500 0 76979000 66932000 74647000 0 0 0 73850000 86218000 86714000 0 0 0 15913 959 15410 298724;298725;298726;298727;298728;298729;298730;298731;298732;298733;298734;298735;298736;298737;298738 183233;183234;183235;183236;183237;183238;183239;183240;183241;183242;183243;183244 183233 12 NTELKLIDEFGR Unmodified 1433.7514 0.75144346 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 35.133 34.011 3 0.018625 11380 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 33.968 30.771 10646000 0 0 0 0 0 0 0 0 0 1109700 0 0 0 0 0 1757600 2386100 2755600 0 0 0 0 1420800 1216200 15914 458 15411 298739;298740;298741;298742;298743;298744 183245 183245 1 NTFAPLTQWEDK Unmodified 1448.6936 0.69359423 1014 P0AGF2 csdE Sulfur acceptor protein CsdE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 1 1 1 40.503 38.868 2 1.7213E-05 18099 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 124.67 103.8 143230000 17931000 15759000 14450000 0 0 0 8627600 9730600 9972900 0 0 0 11038000 12934000 10552000 0 0 0 10818000 12606000 8813000 0 0 0 15915 1014 15412 298745;298746;298747;298748;298749;298750;298751;298752;298753;298754;298755;298756;298757;298758 183246;183247;183248;183249;183250;183251 183251 3 NTFETTPDHVLSAYK Unmodified 1721.8261 0.82606496 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 2 2 1 1 2 2 2 2 2 2 29.589 28.263 2;3 6.5713E-15 12946 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206.18 195.81 552470000 133500000 128500000 124570000 0 0 0 11470000 7117100 13473000 1537400 0 1051700 18712000 16186000 15454000 0 0 0 27390000 24671000 28842000 0 0 0 15916 1107 15413 298759;298760;298761;298762;298763;298764;298765;298766;298767;298768;298769;298770;298771;298772;298773;298774;298775;298776;298777;298778;298779;298780;298781;298782;298783 183252;183253;183254;183255;183256;183257;183258 183256 7 NTGMTLLSSVGGASGPLFGTFFIR Unmodified 2429.2413 0.24131626 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 55.576 54.099 2;3 4.6719E-30 25894 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 185.61 173.33 610520000 24869000 23351000 23065000 0 0 0 85106000 63810000 62080000 2294100 3104000 4994700 56192000 47588000 49218000 0 0 0 57033000 51675000 56139000 0 0 0 15917 1805 15414 298784;298785;298786;298787;298788;298789;298790;298791;298792;298793;298794;298795;298796;298797;298798;298799;298800;298801;298802;298803;298804;298805;298806;298807;298808;298809;298810 183259;183260;183261 183261 3 NTGNFDVIR Unmodified 1034.5145 0.51450765 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 23.293 22.774 2 4.2048E-05 10192 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 133.86 99.61 45645000 0 0 0 0 0 0 0 0 0 0 0 0 0 23750000 21895000 0 0 0 0 0 0 0 0 0 15918 1900 15415 298811;298812;298813;298814;298815;298816;298817;298818;298819 183262;183263;183264;183265;183266;183267;183268;183269 183263 8 NTGNPQAPGTLIGASR Unmodified 1552.7958 0.79576789 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 2 2 2 1 2 23.182 22.498 2;3 9.7309E-24 9673 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 252.42 250.29 886810000 167530000 149430000 142550000 841300 870210 996950 24177000 26927000 26062000 0 0 0 39844000 37435000 43038000 0 0 0 77370000 74378000 75368000 0 0 0 15919 34 15416 298820;298821;298822;298823;298824;298825;298826;298827;298828;298829;298830;298831;298832;298833;298834;298835;298836;298837;298838;298839;298840;298841;298842 183270;183271;183272;183273;183274;183275;183276;183277;183278;183279;183280;183281;183282;183283;183284 183275 15 NTGNPQAPGTLIGASRDEDELPVK Unmodified 2478.235 0.23504491 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 31.415 30.047 3 1.7486E-06 14014 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.633 90.624 147590000 30193000 20638000 21089000 0 0 1988300 6846900 4693900 6574900 0 0 0 4983200 3270000 7131600 0 0 0 14683000 13672000 11824000 0 0 0 15920 34 15417 298843;298844;298845;298846;298847;298848;298849;298850;298851;298852;298853;298854;298855 183285;183286;183287 183287 3 NTHFQTVHGLDADGQYSSAR Unmodified 2203.0043 0.0042571151 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 18.249 18.638 3;4 2.3035E-18 7053 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 168.3 164.04 595820000 16520000 21038000 6130200 7539000 6177800 5477200 53294000 46208000 41755000 40401000 17994000 12272000 39856000 33572000 32831000 4943200 4654400 5071800 48028000 67746000 64361000 6763200 4543200 8647300 15921 844 15418 298856;298857;298858;298859;298860;298861;298862;298863;298864;298865;298866;298867;298868;298869;298870;298871;298872;298873;298874;298875;298876;298877;298878;298879;298880;298881;298882;298883;298884;298885;298886;298887;298888;298889;298890;298891;298892;298893;298894;298895 183288;183289;183290;183291;183292;183293;183294;183295;183296;183297;183298;183299;183300;183301;183302 183294 15 NTIGVGVNR Unmodified 928.50903 0.50902834 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.889 15.697 2 0.10137 5333 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 48.756 24.783 40407000 6830100 5277100 4794100 0 0 0 2563300 0 0 0 0 0 5375100 4129200 3329000 0 0 0 0 4852300 3256400 0 0 0 15922 172 15419 298896;298897;298898;298899;298900;298901;298902;298903;298904 183303 183303 0 NTIGVGVNRPGCFAEYLVIPAFNAFK Unmodified 2853.4636 0.46360506 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.38 52.932 3 1.2578E-12 25834 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.76 128.46 1733000000 233560000 201500000 212500000 0 0 0 101970000 92315000 78418000 0 0 0 117480000 144500000 109470000 0 0 0 151000000 146700000 143600000 0 0 0 15923 172 15420 298905;298906;298907;298908;298909;298910;298911;298912;298913;298914;298915;298916 183304;183305;183306;183307;183308;183309;183310;183311 183305 8 NTKVEISELNR Unmodified 1301.6939 0.69392858 3 CON__ENSEMBL:ENSBTAP00000038253 yes yes 0 0 1 By MS/MS By MS/MS 1 1 18.31 18.711 3 0.00088013 5514 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 59.265 2.714 10150000 0 0 0 0 0 4559700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5590600 + 15924 3 15421 298917;298918 183312;183313 183312 1 NTLEIVQEGVEAR Unmodified 1456.7522 0.75217174 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 32.985 31.714 2 5.9236E-50 14356 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 294.13 280.36 281210000 21056000 21362000 19137000 0 0 0 0 0 0 0 0 0 40613000 40405000 37550000 0 0 0 0 51746000 49338000 0 0 0 15925 180 15422 298919;298920;298921;298922;298923;298924;298925;298926;298927 183314;183315;183316;183317;183318;183319;183320;183321;183322 183322 9 NTLLHEQWCDLLEENSVDAVK Unmodified 2512.1904 0.19040291 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 4 2 2 2 6 8 8 2 2 2 12 14 12 2 3 2 8 8 8 47.681 46.573 2;3;4 1.3545E-117 21895 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 405.66 398.11 53385000000 439490000 461500000 429840000 30579000 27368000 36900000 317100000 301280000 286040000 3351500000 3113900000 3304400000 364780000 332320000 340670000 9337800000 10220000000 10178000000 544250000 530920000 449130000 3848000000 4596500000 542480000 15926 458 15423 298928;298929;298930;298931;298932;298933;298934;298935;298936;298937;298938;298939;298940;298941;298942;298943;298944;298945;298946;298947;298948;298949;298950;298951;298952;298953;298954;298955;298956;298957;298958;298959;298960;298961;298962;298963;298964;298965;298966;298967;298968;298969;298970;298971;298972;298973;298974;298975;298976;298977;298978;298979;298980;298981;298982;298983;298984;298985;298986;298987;298988;298989;298990;298991;298992;298993;298994;298995;298996;298997;298998;298999;299000;299001;299002;299003;299004;299005;299006;299007;299008;299009;299010;299011;299012;299013;299014;299015;299016;299017;299018;299019;299020;299021;299022;299023;299024;299025;299026;299027;299028;299029;299030;299031;299032;299033;299034;299035;299036;299037;299038;299039;299040;299041;299042;299043;299044 183323;183324;183325;183326;183327;183328;183329;183330;183331;183332;183333;183334;183335;183336;183337;183338;183339;183340;183341;183342;183343;183344;183345;183346;183347;183348;183349;183350;183351;183352;183353;183354;183355;183356;183357;183358;183359;183360;183361;183362;183363;183364;183365;183366;183367;183368;183369;183370;183371;183372;183373;183374;183375;183376;183377;183378;183379;183380;183381;183382;183383;183384;183385;183386;183387;183388;183389;183390;183391;183392;183393;183394;183395;183396;183397;183398;183399;183400;183401;183402;183403;183404;183405;183406;183407;183408;183409;183410;183411 183405 86 NTLLHEQWCDLLEENSVDAVKVR Unmodified 2767.3599 0.35992785 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 42.698 42.203 4 2.3369E-35 14938 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 206.11 200.04 56958000 0 0 0 0 0 0 0 0 0 0 3958200 0 0 0 0 15376000 19786000 17839000 0 0 0 0 0 0 15927 458 15424 299045;299046;299047;299048 183412;183413;183414 183414 3 NTLLYTEMVTTGAIIHGK Unmodified 1961.0292 0.029198223 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 43.811 42.375 3 0.070337 20701 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 38.017 34.577 62092000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18153000 22372000 21566000 0 0 0 15928 1399 15425 299049;299050;299051 183415 183415 0 NTLNKPVIMGR Unmodified 1241.6914 0.69142616 672 P0ABQ4 folA Dihydrofolate reductase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.625 17.383 2 5.7647E-10 6166 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.72 180 234650000 18235000 16712000 17208000 0 0 0 18245000 16875000 17905000 0 0 0 21611000 18423000 15053000 0 0 0 26123000 25941000 22317000 0 0 0 15929 672 15426 299052;299053;299054;299055;299056;299057;299058;299059;299060;299061;299062;299063 183416;183417;183418;183419;183420;183421;183422;183423;183424 183420 9 NTLSLQGR Unmodified 887.48248 0.48247924 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.409 16.152 2 0.024104 4054 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 65.246 49.865 64595000 0 0 4602100 6321100 6948200 6892300 0 0 3543100 0 0 0 4392200 0 2764800 0 0 0 6013500 4453500 5297900 4896800 4097500 4372200 15930 1933 15427 299064;299065;299066;299067;299068;299069;299070;299071;299072;299073;299074;299075;299076 183425 183425 1 NTLWNQIKANMLDIPVK Oxidation (M) 2013.0717 0.07173174 1071 P11553 fucK L-fuculokinase yes yes 0 1 1 By MS/MS By matching 1 1 30.636 30.663 2 0.028496 10680 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 43.084 26.947 19361000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11640000 7721500 0 0 0 0 0 0 0 15931 1071 15428 299077;299078 183426 183426 479 1 NTLWQVGTDHAGIATQMVVER Unmodified 2325.1536 0.15356389 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 2 2 1 1 1 2 2 1 2 2 2 40.87 39.067 2;3 1.1398E-62 19409 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 326.37 303.38 3041800000 237900000 216730000 198400000 1969600 1578900 0 253490000 251570000 247840000 3879300 2597400 1929400 257820000 196290000 198750000 0 0 0 328340000 333430000 309320000 0 0 0 15932 158 15429 299079;299080;299081;299082;299083;299084;299085;299086;299087;299088;299089;299090;299091;299092;299093;299094;299095;299096;299097;299098;299099;299100;299101;299102 183427;183428;183429;183430;183431;183432;183433;183434;183435;183436;183437;183438 183429 12 NTMLTVFSR Unmodified 1067.5434 0.54336494 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 35.869 33.796 2 0.0004588 13190 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 109.71 92.329 19177000 0 0 0 866300 1011100 1095000 0 0 0 4141400 3199600 3318000 0 0 0 0 0 0 0 0 0 1555400 1861500 2128700 15933 1047 15430 299103;299104;299105;299106;299107;299108;299109;299110;299111 183439;183440;183441 183441 3 NTMLTVFSRQTDKQYYMNQQR Unmodified 2651.2584 0.25843967 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 2 By matching By matching By MS/MS 1 1 1 53.658 53.714 3 0.13387 20144 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 28.325 27.247 56124000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19587000 20073000 16463000 0 0 0 0 0 0 15934 1047 15431 299112;299113;299114 183442 183442 1 NTNFEDAK Unmodified 937.41412 0.4141249 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.863 12.49 2 0.0013173 3389 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.86 101.52 4690500000 223230000 205550000 0 6428900 7198500 6642600 476730000 533400000 381740000 11117000 9407100 8790300 517750000 404760000 393930000 4299100 6164300 0 512680000 470020000 492560000 5599100 6606900 5891400 15935 192 15432 299115;299116;299117;299118;299119;299120;299121;299122;299123;299124;299125;299126;299127;299128;299129;299130;299131;299132;299133;299134;299135;299136;299137 183443;183444;183445;183446;183447;183448;183449;183450;183451;183452;183453;183454;183455 183448 13 NTNITGVIVNK Unmodified 1171.6561 0.65608651 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.678 22.908 2 2.7187E-07 10184 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 160.82 156.41 3810500000 208250000 192980000 211310000 2764300 1553500 1523400 373210000 379720000 376830000 38573000 30688000 30818000 363560000 361630000 335080000 3841200 2944000 2454800 288580000 290430000 308490000 2522200 2772400 0 15936 539 15433 299138;299139;299140;299141;299142;299143;299144;299145;299146;299147;299148;299149;299150;299151;299152;299153;299154;299155;299156;299157;299158;299159;299160 183456;183457;183458;183459;183460;183461;183462;183463;183464;183465;183466;183467;183468;183469;183470;183471;183472;183473;183474 183459 19 NTPVSELITLGENMGLENLAR Unmodified 2270.1576 0.15764621 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 1 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 55.618 54.169 2;3 2.0568E-43 21913 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 180.08 167.23 1090100000 134260000 132900000 80901000 24342000 26828000 26388000 44153000 44025000 48821000 49423000 86844000 127930000 42288000 37460000 37883000 0 0 0 47881000 47216000 50519000 0 0 0 15937 982 15434 299161;299162;299163;299164;299165;299166;299167;299168;299169;299170;299171;299172;299173;299174;299175;299176;299177;299178;299179;299180;299181;299182;299183;299184;299185;299186;299187;299188;299189;299190;299191;299192;299193 183475;183476;183477;183478;183479;183480 183475 6 NTQAVLDGSLDQFIEASLK Unmodified 2048.0426 0.042599681 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 2 1 54.788 53.332 2 1.3542E-15 26085 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 157.37 152.66 429810000 37816000 38079000 36532000 0 0 0 37218000 21573000 24577000 0 0 0 45340000 47852000 39204000 0 0 0 40781000 33956000 26877000 0 0 0 15938 149 15435 299194;299195;299196;299197;299198;299199;299200;299201;299202;299203;299204;299205;299206;299207;299208;299209;299210 183481;183482;183483;183484;183485 183484 1 NTQGVILIR Unmodified 1012.6029 0.60292873 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.036 24.938 2 0.00014849 11603 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.06 91.52 2330800000 153410000 153090000 138170000 0 6600200 6110800 162040000 163740000 155660000 18013000 23509000 21970000 180020000 180830000 168100000 12718000 9875300 12249000 220850000 252410000 233640000 19748000 17987000 20036000 15939 882 15436 299211;299212;299213;299214;299215;299216;299217;299218;299219;299220;299221;299222;299223;299224;299225;299226;299227;299228;299229;299230;299231;299232;299233 183486;183487;183488;183489;183490;183491;183492;183493;183494;183495;183496;183497;183498;183499;183500;183501 183489 16 NTSDRFEAR Unmodified 1094.5105 0.51048491 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 11.082 11.781 2 0.097938 2970 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 52.126 13.334 32896000 12593000 11459000 8843800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15940 1107 15437 299234;299235;299236 183502 183502 1 NTSFAPGNVSIK Unmodified 1233.6354 0.63535107 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 25.746 24.805 2 6.2232E-05 10917 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.52 103.94 2586800000 897410000 849150000 779440000 0 2111800 2100000 0 0 0 0 0 0 6494400 6878200 6151400 0 0 0 0 20124000 16981000 0 0 0 15941 1305 15438 299237;299238;299239;299240;299241;299242;299243;299244;299245;299246 183503;183504;183505;183506;183507 183507 5 NTSPEIAEAIFEVAGYDEK Unmodified 2081.9793 0.97933072 622 P0AB14 yccJ Uncharacterized protein YccJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.236 52.788 2;3 2.7319E-37 26130 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 244.56 216.88 2060100000 257700000 266970000 260550000 0 0 0 321270000 263680000 281890000 0 0 0 88948000 74099000 76243000 0 0 0 58318000 49835000 60622000 0 0 0 15942 622 15439 299247;299248;299249;299250;299251;299252;299253;299254;299255;299256;299257;299258;299259;299260;299261;299262;299263;299264;299265;299266;299267;299268;299269;299270 183508;183509;183510;183511;183512;183513;183514;183515;183516;183517;183518;183519;183520;183521;183522;183523;183524 183510 17 NTTHLVWATGGGMVPEEEMNQYLAK Unmodified 2775.2996 0.29963578 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.678 43.163 3 9.0728E-16 21072 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 151.85 151.73 393220000 18114000 16144000 15035000 0 0 0 31940000 37227000 35943000 0 0 0 29021000 29852000 26927000 0 0 0 50777000 52292000 49946000 0 0 0 15943 51 15440 299271;299272;299273;299274;299275;299276;299277;299278;299279;299280;299281;299282 183525;183526;183527;183528;183529;183530;183531;183532;183533 183527 9 NTTIPTK Unmodified 773.42832 0.42831841 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 2 2 2 1 1 1 2 2 2 11.834 12.343 2 0.0035973 3198 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.32 55.745 11235000000 776920000 635880000 631000000 87099000 85780000 82983000 1201100000 1009700000 1044700000 177540000 165840000 177400000 599800000 970190000 536420000 47267000 42414000 45653000 902940000 885880000 896890000 80098000 82346000 68929000 15944 293 15441 299283;299284;299285;299286;299287;299288;299289;299290;299291;299292;299293;299294;299295;299296;299297;299298;299299;299300;299301;299302;299303;299304;299305;299306;299307;299308;299309;299310;299311;299312;299313;299314;299315 183534;183535;183536;183537;183538;183539;183540;183541;183542;183543;183544;183545;183546;183547;183548;183549;183550 183540 15 NTTIPVAR Unmodified 870.49232 0.49231565 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.133 15.808 2 0.01425 4951 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 72.138 58.63 701760000 35459000 0 29815000 1962000 1941300 1860600 5090100 76393000 63180000 6040800 3486000 3702600 82005000 67635000 67672000 0 0 0 97925000 72130000 84976000 0 490650 0 15945 294 15442 299316;299317;299318;299319;299320;299321;299322;299323;299324;299325;299326;299327;299328;299329;299330;299331;299332;299333 183551;183552 183552 1 NTTQNHALVLADWLR Unmodified 1750.9115 0.91146635 1840 P76243 yeaO Uncharacterized protein YeaO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 41.56 39.874 2;3 7.5483E-15 19249 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 223.46 207.72 431740000 56837000 54572000 58859000 0 0 0 44781000 42568000 41994000 0 0 0 22501000 17601000 15767000 0 0 0 25480000 27580000 23200000 0 0 0 15946 1840 15443 299334;299335;299336;299337;299338;299339;299340;299341;299342;299343;299344;299345;299346;299347;299348;299349;299350;299351;299352;299353;299354;299355;299356 183553;183554;183555;183556;183557;183558;183559;183560;183561;183562;183563 183560 11 NTVSQIITLLR Unmodified 1256.7452 0.74523587 579 P0AA89 dosC Diguanylate cyclase DosC yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 50.487 49.143 2 2.8618E-07 24217 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 159.79 146.82 26495000 8342100 8831800 9321100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15947 579 15444 299357;299358;299359 183564 183564 1 NTVVIMTSNLGSDLIQER Unmodified 1989.0201 0.0200901 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 2 2 2 1 2 2 2 2 2 1 2 47.02 45.481 2;3 1.0701E-67 22017 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 366.28 357.09 705130000 75960000 52770000 48760000 1965200 1431700 0 100500000 100690000 87689000 8976000 4174700 6863200 39261000 31898000 33731000 0 0 0 41468000 31690000 37302000 0 0 0 15948 1662 15445 299360;299361;299362;299363;299364;299365;299366;299367;299368;299369;299370;299371;299372;299373;299374;299375;299376;299377;299378;299379;299380;299381;299382;299383;299384;299385;299386;299387 183565;183566;183567;183568;183569;183570;183571;183572;183573;183574;183575;183576;183577;183578;183579;183580;183581;183582;183583;183584;183585 183576 20 NTWTLLPR Unmodified 999.55016 0.55016488 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.976 35.361 2 0.0018523 12422 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 105.39 101.03 794240000 33406000 35609000 30393000 14484000 15857000 15616000 25327000 27464000 22832000 28187000 25725000 27140000 25134000 24863000 29547000 10473000 6823900 8003200 83022000 82608000 87497000 43629000 45193000 45406000 15949 215 15446 299388;299389;299390;299391;299392;299393;299394;299395;299396;299397;299398;299399;299400;299401;299402;299403;299404;299405;299406;299407;299408;299409;299410;299411 183586;183587;183588;183589;183590;183591;183592;183593;183594;183595;183596;183597;183598;183599;183600;183601;183602;183603;183604;183605;183606;183607 183600 22 NTYASPEQWQEK Unmodified 1479.663 0.66302238 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 21.641 21.685 2 2.1637E-23 9090 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 237.51 233.62 2709900000 399260000 316370000 309240000 0 0 528810 188340000 146250000 160110000 0 0 0 192270000 178220000 161030000 0 0 0 219530000 215460000 223330000 0 0 0 15950 1195 15447 299412;299413;299414;299415;299416;299417;299418;299419;299420;299421;299422;299423;299424 183608;183609;183610;183611;183612;183613;183614;183615;183616;183617;183618;183619 183608 12 NTYGALASLELAQQFVDKNELEK Unmodified 2580.3071 0.30714722 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.087 50.967 3 1.4858E-29 25296 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 201.15 197.88 695110000 20864000 18089000 0 0 8458600 6183200 48892000 51429000 51835000 36743000 31083000 25694000 45218000 0 56441000 12176000 12243000 6776200 85897000 75568000 65340000 18719000 16399000 1058900 15951 1876 15448 299425;299426;299427;299428;299429;299430;299431;299432;299433;299434;299435;299436;299437;299438;299439;299440;299441;299442;299443;299444;299445 183620;183621;183622;183623;183624;183625;183626;183627;183628 183623 9 NTYGTGCFMLMNTGEK Unmodified 1822.7688 0.76882614 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 38.416 36.771 2;3 1.4704E-49 17666 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 283.35 283.35 2785700000 57064000 52091000 52436000 1490500 1446800 1391200 276080000 297380000 298770000 2955900 3071300 2940900 277450000 258910000 270000000 3911200 2192200 2025400 314540000 308390000 290000000 3181600 3488100 4478300 15952 239 15449 299446;299447;299448;299449;299450;299451;299452;299453;299454;299455;299456;299457;299458;299459;299460;299461;299462;299463;299464;299465;299466;299467;299468;299469;299470;299471;299472;299473;299474;299475;299476;299477;299478;299479 183629;183630;183631;183632;183633;183634;183635;183636;183637;183638;183639;183640;183641;183642;183643;183644;183645;183646;183647;183648;183649;183650;183651 183642 23 NTYGTGCFMLMNTGEK Oxidation (M) 1838.7637 0.76374076 239 P0A6F3 glpK Glycerol kinase yes yes 0 1 0 By MS/MS 1 34.265 32.975 2 0.021145 14957 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 50.088 50.088 4672000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4672000 0 0 0 0 0 0 0 0 0 15953 239 15449 299480 183652 183652 91 0 NVAAALGKPLSELTVTILAK Unmodified 2008.1932 0.19322708 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.454 50.207 3 1.603E-14 24759 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 139.17 139.17 375400000 19972000 14386000 17052000 0 0 0 34518000 31161000 30880000 0 0 0 30071000 26320000 36218000 0 0 0 45656000 50635000 38534000 0 0 0 15954 509 15450 299481;299482;299483;299484;299485;299486;299487;299488;299489;299490;299491;299492 183653;183654;183655;183656;183657;183658;183659 183655 7 NVAKPLVSYIDK Unmodified 1345.7606 0.76055158 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 24.752 23.755 2;3 3.6955E-05 10446 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.28 125.92 1345700000 417140000 320690000 295560000 0 0 596510 58274000 62763000 50849000 0 0 0 20112000 20978000 19550000 0 0 0 29857000 25094000 24215000 0 0 0 15955 1160 15451 299493;299494;299495;299496;299497;299498;299499;299500;299501;299502;299503;299504;299505;299506;299507;299508;299509;299510;299511;299512;299513;299514;299515;299516;299517 183660;183661;183662;183663;183664;183665;183666;183667 183662 7 NVALEEQAVEAVLAK Unmodified 1582.8566 0.85663681 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 3 3 3 3 2 2 2 2 2 4 2 2 3 2 3 3 2 2 2 47.422 46.116 2;3 2.7896E-15 22444 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.34 145.12 14958000000 1179400000 1167000000 1011000000 25264000 19959000 21779000 931970000 919090000 981450000 47397000 47672000 41773000 1264700000 1284200000 1124700000 28289000 22061000 24818000 1565900000 1583100000 1593000000 26916000 24391000 21801000 15956 396 15452 299518;299519;299520;299521;299522;299523;299524;299525;299526;299527;299528;299529;299530;299531;299532;299533;299534;299535;299536;299537;299538;299539;299540;299541;299542;299543;299544;299545;299546;299547;299548;299549;299550;299551;299552;299553;299554;299555;299556;299557;299558;299559;299560;299561;299562;299563;299564;299565;299566;299567;299568;299569;299570;299571;299572;299573;299574;299575;299576 183668;183669;183670;183671;183672;183673;183674;183675;183676;183677;183678;183679;183680;183681;183682;183683;183684;183685;183686;183687;183688;183689;183690;183691;183692;183693;183694;183695;183696;183697;183698;183699;183700;183701;183702;183703;183704;183705;183706;183707;183708;183709;183710;183711;183712;183713;183714;183715;183716;183717;183718;183719;183720;183721;183722;183723;183724;183725;183726 183709 54 NVAVFDTAFHQTMPEESYLYALPYNLYK Unmodified 3323.5849 0.58490199 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.336 52.887 3 8.1057E-11 25810 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 113.13 108.13 696450000 46503000 48825000 32678000 0 0 0 55742000 50935000 45168000 0 0 0 75914000 62862000 62746000 0 0 0 66921000 73183000 74974000 0 0 0 15957 224 15453 299577;299578;299579;299580;299581;299582;299583;299584;299585;299586;299587;299588 183727;183728;183729;183730;183731;183732;183733 183730 7 NVDDALK Unmodified 773.39193 0.3919329 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS 1 1 13.548 14.347 2 0.013965 4446 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 78.616 56.913 120410000 0 120410000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15958 1305 15454 299589;299590 183734;183735 183734 2 NVDDALKNPNVTSVEHVVVLK Unmodified 2289.2329 0.23286007 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 3 3 3 2 2 2 1 2 2 1 2 2 2 2 36.002 34.452 2;3;4 3.3311E-27 16449 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 231.41 228.44 3525200000 1114300000 1241500000 1049200000 1992200 2633300 2330000 6345000 9977300 12216000 0 0 0 0 6499100 12326000 0 0 0 25930000 21395000 18539000 0 0 0 15959 1305 15455 299591;299592;299593;299594;299595;299596;299597;299598;299599;299600;299601;299602;299603;299604;299605;299606;299607;299608;299609;299610;299611;299612;299613;299614;299615;299616;299617;299618;299619 183736;183737;183738;183739;183740;183741;183742 183742 7 NVDGEIDCSGK Unmodified 1192.503 0.50301627 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.903 13.785 2 3.4189E-10 3949 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 185.29 185.29 339790000 30365000 29068000 33765000 0 1063500 1246900 32655000 31385000 25499000 0 0 0 29961000 25968000 21520000 0 0 0 22945000 27355000 26994000 0 0 0 15960 1789 15456 299620;299621;299622;299623;299624;299625;299626;299627;299628;299629;299630;299631;299632;299633 183743;183744;183745;183746;183747;183748;183749;183750;183751;183752;183753 183752 11 NVDIILNAQTTEVK Unmodified 1556.841 0.84098675 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.383 33.827 2 2.0603E-28 16572 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 248.42 242.7 1102800000 56077000 53058000 45397000 0 0 0 108540000 106770000 111910000 0 0 0 86385000 82871000 97907000 0 0 0 113360000 116760000 123800000 0 0 0 15961 1437 15457 299634;299635;299636;299637;299638;299639;299640;299641;299642;299643;299644;299645 183754;183755;183756;183757;183758;183759;183760;183761;183762;183763;183764;183765 183754 11 NVDKQTQDFAAR Unmodified 1391.6793 0.67934115 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.7 12.867 3 0.032674 2863 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 36.284 21.408 21831000 0 0 0 0 0 0 0 0 0 5235000 3313300 2593200 0 0 0 1542300 1137900 1578200 0 0 0 1299900 2067400 3063500 15962 294 15458 299646;299647;299648;299649;299650;299651;299652;299653;299654 183766 183766 0 NVDKTDAAQK Unmodified 1088.5462 0.54620171 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 4.7192 5.6237 3 0.014765 945 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 54.066 37.928 103170000 0 0 0 0 0 0 25861000 0 20039000 0 0 0 9015600 11094000 9511800 0 0 0 14520000 0 13128000 0 0 0 15963 688 15459 299655;299656;299657;299658;299659;299660;299661 183767;183768 183768 2 NVDLALAGITITDER Unmodified 1599.8468 0.84680041 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 2 3 2 3 2 2 48.579 47.266 2;3 1.6675E-24 22769 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 225.23 206.27 1337800000 242720000 215500000 248960000 0 0 0 54940000 3189500 3071200 0 0 0 144820000 126580000 122500000 0 0 0 87388000 82646000 5438500 0 0 0 15964 877 15460 299662;299663;299664;299665;299666;299667;299668;299669;299670;299671;299672;299673;299674;299675;299676;299677;299678;299679;299680;299681;299682;299683;299684;299685;299686;299687;299688 183769;183770;183771;183772;183773;183774;183775;183776;183777;183778;183779;183780;183781;183782;183783;183784;183785 183774 16 NVEASFELNDASK Unmodified 1422.6627 0.66268803 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 1 1 1 1 2 1 29.004 27.658 2 1.0509E-10 12339 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 159.09 153.55 573370000 83347000 71770000 62857000 0 0 0 65077000 73631000 65435000 0 0 0 44562000 0 0 0 0 0 52291000 50686000 0 0 0 3710500 15965 423 15461 299689;299690;299691;299692;299693;299694;299695;299696;299697;299698;299699;299700;299701;299702;299703;299704 183786;183787;183788;183789;183790;183791;183792;183793;183794;183795;183796;183797;183798;183799 183791 13 NVEDLSEVALR Unmodified 1243.6408 0.64083038 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.513 32.895 2 0.00011332 15114 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 117.31 85.551 187530000 0 0 0 4419500 4374700 4054600 11082000 9493000 12012000 0 0 0 13412000 12235000 11342000 0 0 0 26806000 28147000 30290000 6900900 5943600 7012400 15966 1417 15462 299705;299706;299707;299708;299709;299710;299711;299712;299713;299714;299715;299716;299717;299718;299719 183800;183801;183802;183803;183804;183805;183806 183805 7 NVEVFDTGGR Unmodified 1092.52 0.51998696 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.075 22.345 2 2.0455E-06 9099 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 158.37 142.16 2037700000 169840000 156400000 158960000 0 0 0 189660000 185060000 180300000 0 0 0 139080000 132180000 139570000 0 0 0 200170000 194720000 191770000 0 0 0 15967 1132 15463 299720;299721;299722;299723;299724;299725;299726;299727;299728;299729;299730;299731 183807;183808;183809;183810;183811;183812;183813;183814;183815 183815 9 NVEVLDSGAR Unmodified 1058.5356 0.53563702 992 P0AG78 sbp Sulfate-binding protein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 18.089 18.711 2 9.3232E-05 7019 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.11 92.945 106740000 0 9882300 9021400 0 0 0 11016000 8641300 8858000 0 0 0 9118900 6628800 5505300 0 0 0 11234000 13800000 13039000 0 0 0 15968 992 15464 299732;299733;299734;299735;299736;299737;299738;299739;299740;299741;299742 183816;183817;183818;183819;183820;183821;183822;183823;183824 183819 9 NVEYLVVEAAGETR Unmodified 1548.7784 0.77838649 967 P0AFW8 rof Protein rof yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 40.018 38.267 2;3 1.7296E-14 17769 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 190.36 184.12 284980000 23797000 24010000 23940000 763920 636680 1496500 37455000 36280000 35291000 959010 553860 0 22537000 16921000 17879000 0 0 0 8135200 18067000 16258000 0 0 0 15969 967 15465 299743;299744;299745;299746;299747;299748;299749;299750;299751;299752;299753;299754;299755;299756;299757;299758;299759;299760;299761;299762;299763;299764;299765;299766;299767;299768;299769;299770 183825;183826;183827;183828;183829;183830;183831;183832;183833;183834;183835;183836;183837;183838;183839;183840;183841;183842;183843;183844 183843 17 NVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENK Unmodified 3950.9335 0.93353028 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.034 53.853 4 8.1741E-29 26437 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.74 153.82 541190000 102980000 97222000 100900000 0 0 0 40867000 32965000 29582000 0 5383700 0 17730000 0 13632000 10787000 13416000 11924000 28303000 14383000 21114000 0 0 0 15970 553 15466 299771;299772;299773;299774;299775;299776;299777;299778;299779;299780;299781;299782;299783;299784;299785 183845;183846;183847 183847 3 NVFSGIR Unmodified 791.42899 0.42898711 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 1 3 3 3 1 1 1 3 3 3 1 1 1 3 4 4 1 18.519 18.5 1;2 0.00027072 9428 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 170.73 79.74 2370600000 249370000 115110000 105820000 2524600 2948900 2907100 186250000 196970000 209300000 8098000 6199600 10298000 161530000 138770000 151020000 7874900 5700600 4474700 265740000 284900000 252530000 0 2293000 0 15971 60 15467 299786;299787;299788;299789;299790;299791;299792;299793;299794;299795;299796;299797;299798;299799;299800;299801;299802;299803;299804;299805;299806;299807;299808;299809;299810;299811;299812;299813;299814;299815;299816;299817;299818;299819;299820;299821;299822;299823;299824;299825;299826;299827;299828;299829;299830;299831 183848;183849;183850;183851;183852;183853;183854;183855;183856;183857;183858;183859;183860;183861;183862;183863;183864;183865;183866;183867;183868;183869;183870 183855 23 NVFYPQMAR Unmodified 1124.5437 0.54369929 764 P0AD12 yeeZ Protein YeeZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.852 27.422 2 5.2681E-05 12524 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.33 139.91 396200000 40254000 38846000 31623000 0 0 0 0 48952000 48833000 588540 817110 790980 26695000 25722000 28201000 0 0 0 35141000 40699000 29041000 0 0 0 15972 764 15468 299832;299833;299834;299835;299836;299837;299838;299839;299840;299841;299842;299843;299844;299845 183871;183872;183873;183874;183875;183876;183877;183878;183879;183880;183881 183877 11 NVGDDLNEGKPTLPLLHAMHHGTPEQAQMIR Unmodified 3418.6874 0.68742677 769 P0AD57 ispB Octaprenyl-diphosphate synthase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 2 3 3 2 31.901 30.58 4;5;6 1.4618E-12 14385 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 115.02 114.52 935320000 88291000 85914000 97516000 0 0 0 61026000 60249000 56528000 0 0 0 41544000 47316000 63769000 0 0 0 116310000 142460000 74396000 0 0 0 15973 769 15469 299846;299847;299848;299849;299850;299851;299852;299853;299854;299855;299856;299857;299858;299859;299860;299861;299862;299863;299864;299865;299866;299867;299868;299869;299870;299871;299872;299873;299874 183882;183883;183884;183885;183886;183887;183888;183889;183890;183891;183892;183893 183885 12 NVGDRPLLWSTLGQSLMK Unmodified 2014.067 0.066980713 717 P0ACB7 hemY Protein HemY yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.178 47.749 3 0.00043273 19015 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 65.47 61.436 69705000 0 0 0 3569700 3019700 3401600 0 0 0 5802300 6974300 6941000 0 0 0 0 0 0 5973000 10475000 7178200 5370000 5756900 5243000 15974 717 15470 299875;299876;299877;299878;299879;299880;299881;299882;299883;299884;299885;299886 183894;183895;183896;183897 183894 4 NVGEAIADFNMIEEGDR Unmodified 1878.8418 0.84179138 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.451 46.061 2 3.0236E-19 22587 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 198.14 175.94 187590000 13216000 11756000 12003000 0 0 0 10586000 12425000 12947000 0 0 0 20524000 15992000 15211000 0 0 0 19133000 21949000 21852000 0 0 0 15975 1812 15471 299887;299888;299889;299890;299891;299892;299893;299894;299895;299896;299897;299898 183898;183899;183900;183901;183902;183903;183904;183905;183906;183907;183908 183903 9 NVGENALAISR Unmodified 1142.6044 0.60438529 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 22.428 22.006 2 5.4044E-06 8879 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 152.11 129.04 1099600000 109070000 101950000 91979000 0 0 0 0 0 0 0 0 0 115260000 98558000 126380000 0 0 0 152480000 149070000 154870000 0 0 0 15976 720 15472 299899;299900;299901;299902;299903;299904;299905;299906;299907 183909 183909 1 NVGFIGWR Unmodified 947.49774 0.49773538 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.414 35.602 2 0.00015955 17041 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.19 141.41 2288000000 299150000 289840000 266230000 0 0 0 198530000 211700000 201840000 0 1134900 1165100 97841000 110680000 106450000 0 0 0 165410000 176550000 160340000 477530 0 661750 15977 549 15473 299908;299909;299910;299911;299912;299913;299914;299915;299916;299917;299918;299919;299920;299921;299922;299923 183910;183911;183912;183913;183914;183915;183916;183917;183918;183919;183920;183921 183917 11 NVGIDPEVYSGFAFGMGMER Unmodified 2174.9765 0.97651073 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.481 53.033 2 5.8363E-30 26028 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 215 212.05 485830000 46959000 47066000 43489000 0 0 0 29834000 24467000 27464000 0 0 0 45568000 41948000 43289000 0 0 0 50813000 45869000 39068000 0 0 0 15978 183 15474 299924;299925;299926;299927;299928;299929;299930;299931;299932;299933;299934;299935 183922;183923;183924;183925;183926;183927;183928;183929;183930 183924 9 NVGSFDNNDENVGSGMVGAPACGDVMK Unmodified 2740.1527 0.15271355 721 P0ACD4 iscU Iron-sulfur cluster assembly scaffold protein IscU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 37.734 35.997 2;3 3.7612E-22 17435 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 211.16 211.16 2100400000 245390000 214300000 207360000 3444400 3297100 4126400 73200000 92324000 80276000 0 2734600 4136300 182840000 161360000 173330000 0 0 0 198820000 213560000 237310000 0 2616200 0 15979 721 15475 299936;299937;299938;299939;299940;299941;299942;299943;299944;299945;299946;299947;299948;299949;299950;299951;299952;299953;299954;299955;299956;299957;299958;299959;299960;299961;299962;299963;299964;299965;299966;299967;299968 183931;183932;183933;183934;183935;183936;183937;183938;183939;183940;183941;183942;183943;183944;183945;183946;183947;183948;183949;183950;183951;183952;183953 183938 23 NVGVAAPFGPVNVQK Unmodified 1495.8147 0.81471242 1368 P31455 yidR Uncharacterized protein YidR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.036 33.579 2 0.00035982 16356 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.744 74.766 182550000 19937000 20017000 17711000 0 0 0 15929000 15995000 18922000 0 0 0 9863800 10237000 10748000 0 0 0 12923000 15508000 14760000 0 0 0 15980 1368 15476 299969;299970;299971;299972;299973;299974;299975;299976;299977;299978;299979;299980 183954 183954 0 NVHLSGGVGIGGVLEPLQANPTIIEDNCFIGAR Unmodified 3416.7511 0.75107289 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 52.811 51.471 3;4 5.2536E-44 25123 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 220.2 215.78 1517000000 187330000 133340000 113690000 0 3495000 1937900 146660000 144600000 146350000 0 0 0 107480000 95514000 90686000 0 0 0 108880000 107030000 130030000 0 0 0 15981 512 15477 299981;299982;299983;299984;299985;299986;299987;299988;299989;299990;299991;299992;299993;299994;299995;299996;299997;299998;299999;300000;300001;300002;300003;300004;300005;300006 183955;183956;183957;183958;183959;183960;183961;183962;183963;183964;183965;183966;183967;183968;183969;183970;183971;183972;183973 183960 19 NVICDIDGVLMHDNVAVPGAAEFLHGIMDK Unmodified 3249.5621 0.56207483 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.8 53.387 4 0.0012533 25289 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 53.073 53.042 961160000 100260000 85020000 96244000 48355000 40344000 49470000 67857000 0 57557000 0 0 0 66233000 71417000 54924000 0 0 0 69061000 77823000 76593000 0 0 0 15982 906 15478 300007;300008;300009;300010;300011;300012;300013;300014;300015;300016;300017;300018;300019;300020 183974;183975;183976;183977;183978;183979;183980;183981;183982;183983;183984 183983 11 NVIEVAPLAYMR Unmodified 1374.733 0.73295662 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.692 44.191 2 9.2606E-05 15716 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 96.331 95.828 177830000 22614000 23449000 22061000 2311400 2187600 2940000 11838000 12763000 13087000 0 0 0 9481400 7677400 7552100 0 0 0 10326000 11025000 10481000 0 4383400 3646900 15983 530 15479 300021;300022;300023;300024;300025;300026;300027;300028;300029;300030;300031;300032;300033;300034;300035;300036;300037 183985;183986 183986 1 NVIGNIFAR Unmodified 1002.5611 0.56106391 315 P0A763 ndk Nucleoside diphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.897 35.225 2 4.5862E-06 16164 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 174.21 160.7 5128400000 714990000 750040000 688440000 0 2277200 3156500 254090000 259780000 248230000 0 0 0 177040000 175250000 168360000 0 0 0 572370000 554700000 559720000 0 0 0 15984 315 15480 300038;300039;300040;300041;300042;300043;300044;300045;300046;300047;300048;300049;300050;300051;300052 183987;183988;183989;183990;183991;183992;183993;183994;183995;183996;183997;183998;183999 183999 13 NVISELLAEGVHWPAPIVINAEEIDSPFAGK Unmodified 3314.7187 0.71869335 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 55.53 55.585 3 4.0375E-09 21090 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 90.741 88.86 42853000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8982700 12858000 21011000 0 0 0 0 0 0 15985 1102 15481 300053;300054;300055 184000 184000 1 NVKPDILIGVSGQTGLFTEEIIR Unmodified 2498.3744 0.37443893 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.469 50.22 3 1.4483E-15 23654 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 151.89 151.52 623860000 19834000 21112000 21369000 5462000 3179200 1746800 50778000 48190000 44246000 0 0 0 68644000 55573000 54686000 0 0 0 79725000 70978000 78333000 0 0 0 15986 1283 15482 300056;300057;300058;300059;300060;300061;300062;300063;300064;300065;300066;300067;300068;300069;300070 184001;184002;184003;184004;184005;184006;184007;184008;184009;184010 184008 10 NVKPVHQMLHSVGLDALATANDMNR Unmodified 2730.3694 0.3693871 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 34.514 33.054 3;4 1.2224E-40 15715 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 208.16 205.85 1194800000 123690000 141120000 115390000 1650000 0 3627600 77006000 89515000 93334000 0 0 0 81744000 77037000 66431000 0 0 0 99854000 97670000 126680000 0 0 0 15987 1143 15483 300071;300072;300073;300074;300075;300076;300077;300078;300079;300080;300081;300082;300083;300084;300085;300086;300087;300088;300089;300090;300091;300092;300093;300094;300095;300096 184011;184012;184013;184014;184015;184016;184017;184018;184019;184020;184021;184022;184023;184024;184025;184026;184027;184028;184029;184030;184031;184032 184019 22 NVLCTSNPYESQLHAEAYEWAK Unmodified 2609.1857 0.18565188 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 2 2 2 1 1 1 39.47 37.817 2;3 3.1229E-22 18170 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 152.32 152.06 2212200000 236400000 221710000 206150000 2951200 2893200 3840300 153640000 138210000 139160000 3508200 0 4175800 147030000 127850000 118150000 0 2082100 1448200 228520000 237020000 216010000 7107600 7451500 6892600 15988 1143 15484 300097;300098;300099;300100;300101;300102;300103;300104;300105;300106;300107;300108;300109;300110;300111;300112;300113;300114;300115;300116;300117;300118;300119;300120;300121;300122;300123;300124;300125;300126;300127;300128;300129;300130 184033;184034;184035;184036;184037;184038;184039;184040;184041;184042;184043;184044;184045;184046;184047;184048;184049;184050;184051;184052;184053;184054 184049 22 NVLGSYGYSEIR Unmodified 1356.6674 0.66737948 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.831 30.492 2 9.0162E-07 14254 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 179.8 168.64 1148500000 102500000 99771000 96082000 0 0 0 91450000 93709000 82790000 0 0 0 77727000 76039000 72782000 0 0 0 114730000 123650000 117220000 0 0 0 15989 1634 15485 300131;300132;300133;300134;300135;300136;300137;300138;300139;300140;300141;300142 184055;184056;184057;184058;184059;184060;184061 184057 4 NVLIEAAR Unmodified 884.50797 0.50796571 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.255 20.596 2 0.00040535 7939 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.98 106.8 2121400000 185950000 176230000 153300000 1833800 1639300 1832600 248890000 247880000 259000000 0 0 0 147500000 121810000 117660000 0 712790 0 155490000 146750000 154180000 0 724550 0 15990 681 15486 300143;300144;300145;300146;300147;300148;300149;300150;300151;300152;300153;300154;300155;300156;300157;300158;300159 184062;184063;184064;184065;184066;184067;184068;184069;184070;184071;184072;184073 184069 12 NVLINASPIVR Unmodified 1194.7085 0.70845643 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.518 31.955 2 1.5261E-05 14444 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 141.48 129.89 815220000 65401000 57606000 57293000 547210 518190 0 92999000 86167000 82919000 0 594360 0 51168000 58209000 60261000 0 0 0 67321000 65445000 67404000 0 591780 781100 15991 1778 15487 300160;300161;300162;300163;300164;300165;300166;300167;300168;300169;300170;300171;300172;300173;300174;300175;300176 184074;184075;184076;184077;184078;184079 184079 6 NVLQPIGWDAFGLPAEGAAVK Unmodified 2152.1317 0.13168946 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 1 1 1 2 2 1 1 54.415 52.958 2;3 2.0924E-05 26103 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.69 103.08 2257600000 212500000 216900000 181970000 0 0 0 140850000 157690000 121080000 5300800 0 0 178320000 138800000 240670000 0 0 0 271360000 200950000 191200000 0 0 0 15992 170 15488 300177;300178;300179;300180;300181;300182;300183;300184;300185;300186;300187;300188;300189;300190;300191;300192;300193;300194;300195 184080;184081;184082;184083;184084;184085;184086;184087;184088;184089;184090;184091 184085 12 NVLSLIK Unmodified 785.50109 0.50108942 1271 P25742 rfaQ Lipopolysaccharide core heptosyltransferase RfaQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.985 31.537 2 0.022706 12217 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 74.415 18.974 67681000 0 0 0 0 0 0 8279000 7258800 7950100 4709000 3870800 4173200 3367200 6083800 3183700 781000 671970 765830 3933500 4338800 5018900 1536400 0 1759100 15993 1271 15489 300196;300197;300198;300199;300200;300201;300202;300203;300204;300205;300206;300207;300208;300209;300210;300211;300212 184092;184093;184094;184095;184096 184093 5 NVLSSGK Unmodified 703.38645 0.38645359 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.108 12.001 2 0.004947 3103 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.69 94.278 2079200000 371280000 376180000 381670000 14119000 12179000 11037000 0 0 0 0 0 0 173420000 0 0 0 0 0 266180000 224200000 248990000 0 0 0 15994 1625 15490 300213;300214;300215;300216;300217;300218;300219;300220;300221;300222;300223 184097;184098;184099;184100;184101;184102;184103;184104 184097 8 NVLTLVR Unmodified 813.50724 0.50723743 881 P0AES2 gudD Glucarate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.995 26.848 2 0.00097355 12542 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 139.92 91.743 190810000 25748000 27597000 21486000 0 0 0 17202000 17582000 18295000 0 0 0 11538000 11216000 11088000 0 0 0 10274000 9512700 9268800 0 0 0 15995 881 15491 300224;300225;300226;300227;300228;300229;300230;300231;300232;300233;300234;300235 184105;184106;184107;184108;184109;184110;184111;184112;184113;184114;184115 184107 11 NVLVEKPFTPTLAQAK Unmodified 1754.9931 0.99307071 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 30.81 29.454 2;3 1.0873E-24 13712 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 253.79 239.85 1643800000 99818000 104680000 100380000 0 0 0 226290000 186620000 185770000 0 0 0 134560000 123530000 108920000 0 0 0 123550000 126290000 123440000 0 0 0 15996 1588 15492 300236;300237;300238;300239;300240;300241;300242;300243;300244;300245;300246;300247;300248;300249;300250;300251;300252;300253;300254;300255;300256;300257;300258;300259 184116;184117;184118;184119;184120;184121;184122;184123;184124;184125;184126;184127;184128;184129;184130;184131;184132;184133;184134;184135;184136;184137;184138;184139 184126 24 NVMGVPAVFVNGK Unmodified 1330.7067 0.70674187 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 41.087 39.241 2 0.047464 18305 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 64.841 46.529 150400000 0 0 0 0 0 0 23533000 20546000 23840000 0 1619000 0 15555000 14436000 16499000 0 0 0 14992000 0 19375000 0 0 0 15997 1437 15493 300260;300261;300262;300263;300264;300265;300266;300267;300268 184140;184141 184141 0 NVMHINVTR Unmodified 1082.5655 0.56549736 166 P07649 truA tRNA pseudouridine synthase A yes yes 0 0 0 By MS/MS 1 15.484 16.336 3 0.15278 5581 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 28.177 16.809 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15998 166 15494 300269 184142 184142 1 NVNMMEVAIDEACVR Unmodified 1749.7848 0.78481055 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 2 1 2 2 2 2 2 2 1 45.566 44.06 2;3 2.5758E-20 21904 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 270.67 270.67 1163300000 15198000 7765400 12212000 0 0 0 106090000 102770000 110170000 4248800 0 0 111330000 106330000 106530000 0 0 0 166260000 162980000 147390000 0 0 4027000 15999 531 15495 300270;300271;300272;300273;300274;300275;300276;300277;300278;300279;300280;300281;300282;300283;300284;300285;300286;300287;300288;300289;300290;300291;300292;300293;300294 184143;184144;184145;184146;184147;184148;184149;184150;184151;184152;184153;184154;184155;184156;184157;184158;184159;184160;184161;184162 184143 20 NVNPQIVENYR Unmodified 1344.6786 0.67861287 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.917 23.893 2 2.6201E-06 10130 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 186.76 155.34 1055800000 119710000 107140000 90239000 0 0 0 126840000 122200000 119790000 0 0 848130 70927000 78188000 65007000 0 0 0 53374000 51352000 50222000 0 0 0 16000 1333 15496 300295;300296;300297;300298;300299;300300;300301;300302;300303;300304;300305;300306;300307 184163;184164;184165;184166;184167;184168;184169;184170;184171;184172 184171 10 NVNVEFR Unmodified 876.44537 0.44536545 1801 P76002 pliG Inhibitor of g-type lysozyme yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 1 1 2 2 2 1 1 1 2 2 2 22.351 22.019 2 0.0023005 7507 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.72 100.73 304460000 26130000 7215900 16499000 0 0 0 59129000 46185000 50106000 0 0 0 0 5797300 2441900 0 0 0 27619000 34643000 28691000 0 0 0 16001 1801 15497 300308;300309;300310;300311;300312;300313;300314;300315;300316;300317;300318;300319;300320;300321;300322;300323;300324;300325;300326 184173;184174;184175;184176 184175 4 NVPFESGIDSVGSAR Unmodified 1533.7423 0.74233534 926 P0AFC3 nuoA NADH-quinone oxidoreductase subunit A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.397 31.936 2 1.0816E-06 12212 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 117.86 107.63 879210000 35486000 32521000 37836000 5042100 4316100 4075200 66436000 51562000 64051000 16948000 11657000 15818000 62818000 55432000 64776000 5766200 2809800 2866200 92129000 98249000 113170000 12202000 11371000 11877000 16002 926 15498 300327;300328;300329;300330;300331;300332;300333;300334;300335;300336;300337;300338;300339;300340;300341;300342;300343;300344;300345;300346;300347;300348;300349;300350 184177;184178;184179;184180;184181;184182;184183;184184;184185;184186;184187 184181 11 NVPLFEQALEFAR Unmodified 1532.7987 0.798728 1533 P39377 iadA Isoaspartyl dipeptidase yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 53.987 52.594 2 1.6362E-06 26044 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.81 129.34 56382000 19563000 13419000 17102000 0 0 0 0 0 0 0 0 0 0 6297800 0 0 0 0 0 0 0 0 0 0 16003 1533 15499 300351;300352;300353;300354 184188 184188 1 NVPQQVAR Unmodified 910.49846 0.49846366 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.554 12.387 2 0.0086264 3098 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 81.381 69.87 1242800000 127700000 104700000 104510000 0 0 0 161070000 156390000 166000000 0 0 0 61710000 58912000 63132000 0 0 0 81791000 81628000 75211000 0 0 0 16004 1154 15500 300355;300356;300357;300358;300359;300360;300361;300362;300363;300364;300365;300366 184189;184190;184191;184192 184192 4 NVPYSTDSTVPSASASELIDHALQMNK Unmodified 2874.3706 0.37055212 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.223 47.858 3 2.8492E-07 22566 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 91.416 86.619 147960000 7667600 9526100 8630500 0 0 0 16821000 17473000 16104000 0 0 0 10749000 9095600 10209000 0 0 0 14888000 14284000 12516000 0 0 0 16005 324 15501 300367;300368;300369;300370;300371;300372;300373;300374;300375;300376;300377;300378 184193;184194;184195;184196;184197 184195 5 NVPYSVFMTPPLSR Unmodified 1606.8177 0.81774889 1886 P77212 rclA Probable pyridine nucleotide-disulfide oxidoreductase RclA yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 48.794 47.555 2 0.0056881 23371 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.944 57.703 17049000 5396700 5866800 5785400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16006 1886 15502 300379;300380;300381 184198 184198 0 NVQALEIELQSQLALK Unmodified 1796.0044 0.0043636815 13 CON__P13645 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 51.779 50.514 2 3.4519E-12 20072 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 140.24 136.23 36242000 0 0 0 2769000 2293400 1840400 0 0 0 3591000 2226400 3201700 0 0 0 1740900 0 0 0 0 0 6661300 5065600 6852100 + 16007 13 15503 300382;300383;300384;300385;300386;300387;300388;300389;300390;300391 184199 184199 0 NVQANGTEK Unmodified 959.46722 0.46722311 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 5.3916 6.2408 2 0.00020056 1540 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.52 87.704 239760000 28605000 28977000 23490000 0 0 0 22226000 20215000 21955000 0 0 0 15301000 13746000 17432000 0 0 0 16086000 13484000 18245000 0 0 0 16008 1132 15504 300392;300393;300394;300395;300396;300397;300398;300399;300400;300401;300402;300403 184200;184201;184202;184203;184204;184205;184206;184207 184203 6 NVQDAIADAEQR Unmodified 1328.6321 0.6320566 17 CON__P35908 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 25.396 24.009 2 0.00066302 8779 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 90.685 90.685 29020000 0 0 0 0 0 0 0 0 0 2300300 0 3824200 0 0 0 0 0 0 0 0 0 7348300 7772900 7774100 + 16009 17 15505 300404;300405;300406;300407;300408 184208 184208 0 NVQDAIADAEQRGEHALKDAR Unmodified 2306.1363 0.13633392 17 CON__P35908 yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 32.91 32.272 4 0.15727 11280 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 17.595 16.44 11104000 0 0 0 0 2118200 3640700 0 0 0 0 0 0 0 0 0 2189000 1619300 1536800 0 0 0 0 0 0 + 16010 17 15506 300409;300410;300411;300412;300413 184209;184210 184209 2 NVQNIFSVER Unmodified 1204.62 0.62003536 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 32.312 30.796 2 6.9668E-07 14854 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.94 149.51 454490000 101840000 102760000 98970000 0 0 0 41456000 45166000 46497000 0 0 2016700 0 0 0 0 0 0 15786000 0 0 0 0 0 16011 1376 15507 300414;300415;300416;300417;300418;300419;300420;300421 184211;184212;184213 184212 3 NVSALFLVR Unmodified 1017.5971 0.59711507 1581 P45799 nudE ADP compounds hydrolase NudE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 41.324 39.634 2 0.034295 19203 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 61.999 51.585 41780000 4617900 6590500 5435900 0 0 0 3085500 3418400 2352900 0 0 0 1987800 973960 0 0 0 0 4373800 4161600 4781200 0 0 0 16012 1581 15508 300422;300423;300424;300425;300426;300427;300428;300429;300430;300431;300432 184214 184214 0 NVSNNAK Unmodified 745.37187 0.37186616 1700 P64624 yheO Uncharacterized protein YheO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2.7515 3.6394 2 0.16199 549 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 43.066 23.22 214870000 65818000 60403000 56955000 0 0 0 227500 234960 0 0 0 0 2210000 2404300 1708100 0 0 0 6575600 8971100 9364000 0 0 0 16013 1700 15509 300433;300434;300435;300436;300437;300438;300439;300440;300441;300442;300443;300444;300445 184215;184216;184217;184218;184219;184220;184221 184219 7 NVSTGDVNVEMNAAPGVDLTQLLNNMR Unmodified 2871.3855 0.38549067 13 CON__P13645 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 54.905 53.506 3 1.9385E-22 19590 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 157.9 155.46 167320000 0 0 0 18116000 15304000 18520000 0 0 0 19119000 0 12973000 0 0 0 0 0 0 0 0 0 26759000 25741000 30785000 + 16014 13 15510 300446;300447;300448;300449;300450;300451;300452;300453 184222;184223 184223 2 NVSVNEPFFQGHFPGK Unmodified 1802.874 0.87401821 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 35.686 34.254 3 0.14423 16372 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 20.939 10.742 45096000 7212500 0 4977800 0 0 0 0 0 0 0 0 0 5492100 6019500 0 0 0 0 7836400 5572300 7985000 0 0 0 16015 272 15511 300454;300455;300456;300457;300458;300459;300460 184224;184225 184224 2 NVSVYDGGWYEWSSDPK Unmodified 1987.8588 0.85882166 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 45.554 44.08 2 5.2196E-06 20576 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 108.17 108.11 151910000 0 0 0 0 0 0 18949000 15302000 12327000 0 0 0 24010000 23682000 20710000 0 0 0 11388000 10899000 14644000 0 0 0 16016 1947 15512 300461;300462;300463;300464;300465;300466;300467;300468;300469 184226;184227;184228;184229 184229 3 NVTCYVSR Unmodified 997.46511 0.46511462 842 P0AE91 creA Protein CreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.895 15.471 2 0.0026611 5108 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.629 70.893 150590000 16854000 17743000 15837000 2283800 1763700 2534500 14585000 14643000 15473000 3064400 4061800 4113400 0 8116200 0 0 0 0 10317000 9465200 0 3478900 3290800 2963400 16017 842 15513 300470;300471;300472;300473;300474;300475;300476;300477;300478;300479;300480;300481;300482;300483;300484;300485;300486;300487;300488 184230;184231;184232;184233;184234;184235;184236 184232 6 NVTDKDK Unmodified 818.4134 0.41339662 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.1594 6.7829 2 0.025724 1486 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 82.305 68.53 223270000 0 975250 0 1749700 2137000 2196100 9792500 0 0 7812400 7444300 5990300 21899000 20789000 19082000 522490 0 524680 41855000 37826000 36650000 2610100 0 3416700 16018 408 15514 300489;300490;300491;300492;300493;300494;300495;300496;300497;300498;300499;300500;300501;300502;300503;300504;300505;300506 184237;184238;184239;184240;184241;184242;184243 184238 7 NVTFTYPGR Unmodified 1053.5243 0.52434406 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.546 25.426 2 0.0011292 9055 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 92.439 75.054 125390000 66925000 0 0 1907100 2224700 2193200 0 0 0 7354600 4738400 4348500 0 0 0 2016300 1204900 1491800 0 0 18711000 3414600 4058600 4803800 16019 1631 15515 300507;300508;300509;300510;300511;300512;300513;300514;300515;300516;300517;300518;300519;300520 184244;184245;184246;184247;184248;184249;184250;184251;184252;184253 184249 8 NVTIAIAR Unmodified 856.51305 0.51305109 1280 P26365 amiB N-acetylmuramoyl-L-alanine amidase AmiB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.169 19.165 2 0.0072677 9233 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.614 46.586 319740000 32973000 33262000 0 0 0 0 19113000 15873000 13605000 3924600 2870500 3140700 23057000 18858000 18057000 5574000 9320300 8183200 34685000 26908000 34544000 5621100 4765300 5400400 16020 1280 15516 300521;300522;300523;300524;300525;300526;300527;300528;300529;300530;300531;300532;300533;300534;300535;300536;300537;300538;300539;300540 184254;184255;184256;184257 184255 3 NVTVMAMDSVPR Unmodified 1318.6373 0.63734168 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1 1 1 2 2 1 1 1 1 1 1 1 1 1 30.385 29.053 2 1.8156E-06 14016 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.99 138.34 322840000 0 11493000 9356100 10025000 9732400 10658000 46652000 2559900 0 3221000 17666000 18783000 30025000 27918000 27883000 0 1604200 1141900 30337000 30081000 28188000 0 5515600 0 16021 146 15517 300541;300542;300543;300544;300545;300546;300547;300548;300549;300550;300551;300552;300553;300554;300555;300556;300557;300558;300559;300560;300561;300562;300563;300564 184258;184259;184260;184261;184262;184263;184264;184265;184266;184267;184268 184268 10 NVVAGDPSPDGQGR Unmodified 1367.643 0.64295564 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 13.7 14.383 2 2.7277E-06 4531 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 129.82 125.57 2180100000 177850000 137260000 106150000 1081400 1077000 1151100 206680000 202070000 188400000 1201400 843310 1089200 182040000 188030000 176830000 0 595280 0 188930000 218150000 198690000 978820 0 1006600 16022 1120 15518 300565;300566;300567;300568;300569;300570;300571;300572;300573;300574;300575;300576;300577;300578;300579;300580;300581;300582;300583;300584;300585;300586 184269;184270;184271;184272;184273;184274;184275;184276;184277;184278;184279;184280 184270 12 NVVITDVNEYR Unmodified 1320.6674 0.66737948 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.63 27.336 2 2.9045E-14 12940 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 211.52 200.77 3214000000 312650000 278870000 283610000 0 1092200 0 282340000 311910000 279540000 0 0 0 219930000 225710000 193590000 0 0 0 262800000 298550000 262420000 0 1021900 0 16023 172 15519 300587;300588;300589;300590;300591;300592;300593;300594;300595;300596;300597;300598;300599;300600 184281;184282;184283;184284;184285;184286;184287;184288;184289;184290;184291;184292 184281 12 NVVMITAQNHGFAVDEATLPANLR Unmodified 2580.3119 0.31185545 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 3 3 3 1 1 1 1 1 1 1 3 3 3 42.749 41.201 2;3;4 1.6768E-83 20083 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 340.52 329.04 1124100000 310270000 230220000 244620000 2224900 2238000 1677500 0 0 3040400 0 0 0 22038000 15803000 22997000 0 0 0 93628000 84115000 91212000 0 0 0 16024 238 15520 300601;300602;300603;300604;300605;300606;300607;300608;300609;300610;300611;300612;300613;300614;300615;300616;300617;300618;300619;300620;300621;300622;300623;300624;300625 184293;184294;184295;184296;184297;184298;184299 184296 7 NVVVETLEQLGIR Unmodified 1468.8249 0.82494275 301 P0A720 tmk Thymidylate kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.486 53.038 2 1.0213E-05 25244 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 143.96 134.47 201450000 19263000 18512000 16679000 0 0 0 14457000 13644000 11853000 0 0 0 17278000 19826000 18641000 0 0 0 17082000 18730000 15486000 0 0 0 16025 301 15521 300626;300627;300628;300629;300630;300631;300632;300633;300634;300635;300636;300637 184300;184301 184300 2 NVWGDTPR Unmodified 943.45118 0.45117911 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 19.245 19.8 2 0.0034662 7522 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 91.9 83.078 200210000 27560000 24995000 24153000 427460 0 0 0 0 0 0 0 0 16486000 14198000 15806000 0 0 0 26326000 24691000 25093000 0 472990 0 16026 1609 15522 300638;300639;300640;300641;300642;300643;300644;300645;300646;300647;300648 184302;184303;184304;184305;184306;184307 184304 6 NVWLGDISR Unmodified 1058.5509 0.55089316 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.792 33.554 2 0.06798 12856 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 48.794 32.018 2712600000 83750000 82941000 75909000 0 5655000 5151900 0 0 33731000 0 0 0 553370000 555950000 554130000 13499000 9675000 9253000 3716700 354680000 354490000 8183200 8534600 0 16027 1167 15523 300649;300650;300651;300652;300653;300654;300655;300656;300657;300658;300659;300660;300661;300662;300663;300664;300665 184308;184309;184310 184309 2 NVWVTGAGK Unmodified 930.49232 0.49231565 1103 P15047 entA 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.119 19.685 2 0.0025982 7155 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 84.568 69.129 238490000 0 13360000 15007000 0 0 0 18013000 16196000 14983000 0 0 0 18959000 14698000 14328000 0 0 0 39994000 35938000 37014000 0 0 0 16028 1103 15524 300666;300667;300668;300669;300670;300671;300672;300673;300674;300675;300676 184311;184312;184313;184314;184315 184313 4 NVYAPLK Unmodified 803.45414 0.45413923 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 17.638 18.218 2 0.1313 6268 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 48.174 29.509 93778000 0 0 0 0 987890 1501100 0 0 0 0 2956600 0 19180000 20817000 16946000 0 540570 0 0 0 30849000 0 0 0 16029 1617 15525 300677;300678;300679;300680;300681;300682;300683;300684 184316;184317 184317 2 NVYFIPSALALK Unmodified 1334.7598 0.7598233 1848 P76291 cmoB tRNA (mo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.903 48.497 2 0.0005244 24051 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 83.869 82.272 155440000 12053000 12062000 10008000 0 0 0 12561000 13332000 14138000 0 0 0 12696000 9628300 12648000 0 0 0 15904000 15795000 14619000 0 0 0 16030 1848 15526 300685;300686;300687;300688;300689;300690;300691;300692;300693;300694;300695;300696 184318;184319;184320;184321;184322;184323;184324;184325;184326;184327;184328 184318 11 NWADYEALPR Unmodified 1233.5778 0.57783619 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 35.499 34.019 2 0.00059041 11878 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 93.143 92.076 100010000 24582000 21864000 18203000 11093000 12217000 12050000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16031 76 15527 300697;300698;300699;300700;300701;300702 184329;184330;184331;184332;184333;184334 184330 3 NWADYEALPRDPR Unmodified 1601.7587 0.7586541 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 30.663 29.11 3 0.12639 9958 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 20.096 15.205 8312100 0 0 0 2691700 2500200 3120200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16032 76 15528 300703;300704;300705 184335 184335 1 NWEDQEEWQGGWVR Unmodified 1817.7758 0.77576073 1156 P19318 narY Respiratory nitrate reductase 2 beta chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 43.061 41.237 2 0.00057539 20556 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 77.379 77.379 18404000 3276600 0 0 976700 526860 939030 3575800 4348700 4759900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16033 1156 15529 300706;300707;300708;300709;300710;300711;300712 184336;184337 184336 0 NWEEDDGEEYCTAAADLADAQAVCDK Unmodified 2945.1604 0.16036092 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 45.666 44.221 2;3 1.0575E-17 21740 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 212.72 212.72 255770000 29205000 8845900 20999000 0 0 0 15828000 17011000 12824000 0 0 0 22481000 25583000 22496000 0 0 0 25258000 26941000 28299000 0 0 0 16034 1272 15530 300713;300714;300715;300716;300717;300718;300719;300720;300721;300722;300723;300724;300725;300726;300727;300728;300729;300730;300731;300732;300733;300734;300735 184338;184339;184340;184341;184342;184343;184344 184339 7 NWFNLMMEHQDDLAR Unmodified 1918.8454 0.84543697 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 1 2 2 2 47.465 45.994 2;3 1.392E-20 22813 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 220.5 218.91 1151000000 250530000 209470000 190160000 919180 748260 837400 92519000 89482000 82977000 3852000 2850700 2132200 29770000 25795000 19507000 0 0 0 49948000 51622000 47859000 0 0 0 16035 1258 15531 300736;300737;300738;300739;300740;300741;300742;300743;300744;300745;300746;300747;300748;300749;300750;300751;300752;300753;300754;300755;300756;300757;300758;300759;300760;300761;300762;300763;300764 184345;184346;184347;184348;184349;184350;184351;184352;184353;184354;184355;184356;184357;184358 184346 11 NWGIGDFGDLK Unmodified 1220.5826 0.58258722 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.707 45.214 2 0.0016805 22015 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 118.71 78.443 65198000 3979800 4147800 6436900 0 0 0 6689300 4381300 4869300 1225500 1886600 1205800 0 3400700 4057500 1930900 0 0 7317500 6453400 7216200 0 0 0 16036 1116 15532 300765;300766;300767;300768;300769;300770;300771;300772;300773;300774;300775;300776;300777;300778;300779 184359;184360;184361 184361 2 NWIDKEEYPQSAAIDLR Unmodified 2047.0011 0.0010692176 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 3 1 2 3 1 2 2 3 1 1 1 1 1 1 1 1 36.895 35.151 2;3 8.3371E-51 16763 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 327.94 325.15 14111000000 418270000 311940000 3013900000 0 728010 0 4399100000 4954300000 696400000 60130000 53542000 58609000 21546000 21256000 20631000 0 2863700 2948100 26472000 21203000 27630000 0 0 0 16037 1755;1756 15533 300780;300781;300782;300783;300784;300785;300786;300787;300788;300789;300790;300791;300792;300793;300794;300795;300796;300797;300798;300799;300800;300801;300802;300803;300804;300805;300806;300807 184362;184363;184364;184365;184366;184367;184368;184369;184370;184371;184372;184373;184374;184375;184376;184377;184378;184379;184380;184381;184382;184383 184377 20 NWLTADGAPGPTGTGGFIAEK Unmodified 2059.0011 0.0010692176 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.987 42.475 2 3.1592E-34 20843 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 204.23 175.9 164230000 28800000 26155000 19063000 0 0 0 20697000 20288000 18696000 0 0 0 7727900 5982400 5659800 0 0 0 0 6547000 4607600 0 0 0 16038 1557 15534 300808;300809;300810;300811;300812;300813;300814;300815;300816;300817;300818 184384;184385;184386;184387;184388;184389;184390 184388 7 NWQALALAR Unmodified 1041.572 0.57196295 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.942 33.456 2 0.11317 16049 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 46.426 41.886 171090000 0 14954000 16495000 0 0 665130 20826000 20307000 16537000 0 0 0 10914000 11601000 11501000 0 0 0 16017000 16592000 14682000 0 0 0 16039 1609 15535 300819;300820;300821;300822;300823;300824;300825;300826;300827;300828;300829;300830 184391 184391 0 NWQPSAETR Unmodified 1087.5047 0.50467125 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.014 15.814 2 3.1513E-05 5253 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.78 149.84 1152900000 150570000 172160000 140860000 869600 540170 722880 106760000 97700000 89035000 0 0 0 62205000 53156000 68296000 0 0 0 75590000 70011000 63574000 813440 0 0 16040 43 15536 300831;300832;300833;300834;300835;300836;300837;300838;300839;300840;300841;300842;300843;300844;300845;300846 184392;184393;184394;184395;184396;184397;184398;184399;184400;184401;184402;184403 184400 12 NWSISELR Unmodified 1003.5087 0.50869399 866 P0AEJ6 eutB Ethanolamine ammonia-lyase heavy chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 33.797 32.345 2 0.097129 14759 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 57.047 11.032 71823000 6597700 7750400 6364900 1151500 0 0 5999000 5908500 6310400 0 0 0 5466200 5605700 5238000 0 0 0 6163400 3921100 5346200 0 0 0 16041 866 15537 300847;300848;300849;300850;300851;300852;300853;300854;300855;300856;300857;300858;300859 184404;184405 184404 0 NWTHAIYFR Unmodified 1206.5934 0.59342667 1289 P27128 rfaI Lipopolysaccharide 1,3-galactosyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 28.825 27.102 3 0.019827 10583 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 59.245 52.804 20068000 0 0 0 0 0 0 0 0 4260700 2963400 2529200 1912300 0 0 0 0 0 0 3329400 0 3670300 0 0 1402800 16042 1289 15538 300860;300861;300862;300863;300864;300865;300866 184406 184406 1 NWVMIPHVTHFDK Unmodified 1622.8028 0.80276752 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 4 3 3 3 3 3 3 3 3 3 3 3 1 1 1 3 3 4 3 4 4 32.346 30.823 2;3;4 9.4374E-09 14703 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 161.67 158.54 12723000000 664710000 716250000 743870000 579510000 671550000 799460000 632200000 706720000 649790000 110500000 114620000 96760000 405820000 423920000 470720000 18379000 23036000 20689000 864200000 860900000 735650000 952050000 787230000 674110000 16043 133 15539 300867;300868;300869;300870;300871;300872;300873;300874;300875;300876;300877;300878;300879;300880;300881;300882;300883;300884;300885;300886;300887;300888;300889;300890;300891;300892;300893;300894;300895;300896;300897;300898;300899;300900;300901;300902;300903;300904;300905;300906;300907;300908;300909;300910;300911;300912;300913;300914;300915;300916;300917;300918;300919;300920;300921;300922;300923;300924;300925;300926;300927;300928;300929;300930;300931;300932;300933;300934;300935;300936 184407;184408;184409;184410;184411;184412;184413;184414;184415;184416;184417;184418;184419;184420;184421;184422;184423;184424;184425;184426;184427;184428;184429;184430;184431;184432;184433;184434;184435;184436;184437;184438;184439;184440;184441;184442;184443;184444;184445;184446;184447;184448;184449;184450;184451;184452;184453;184454;184455;184456;184457;184458;184459;184460;184461;184462;184463 184422 55 NWVMIPHVTHFDK Oxidation (M) 1638.7977 0.79768214 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 4 2 1 4 3 4 2 1 1 1 1 2 2 1 2 1 1 1 1 3 2 30.442 28.947 2;3;4 0.00048822 9784 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 68.034 66.928 383860000 35056000 23844000 7913500 51455000 20522000 44591000 17910000 3471600 10545000 4815500 3663900 4325500 12324000 3334800 17593000 0 0 0 15150000 4964800 23988000 14911000 22207000 41270000 16044 133 15539 300937;300938;300939;300940;300941;300942;300943;300944;300945;300946;300947;300948;300949;300950;300951;300952;300953;300954;300955;300956;300957;300958;300959;300960;300961;300962;300963;300964;300965;300966;300967;300968;300969;300970;300971;300972;300973;300974;300975;300976 184464;184465;184466;184467;184468;184469;184470;184471;184472;184473;184474;184475;184476;184477;184478;184479;184480 184469 45 15 NWVMIPHVTHFDKTDITELEAFR Unmodified 2798.385 0.38502039 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 4 4 4 3 3 2 3 3 3 2 2 2 2 2 2 2 3 3 4 4 4 46.846 45.42 2;3;4;5 1.3658E-43 17936 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 262.19 243.36 7523400000 53217000 37450000 29484000 1074800000 1127500000 988370000 62628000 73746000 47238000 113190000 129880000 107740000 18119000 24920000 25660000 37551000 42197000 42327000 52070000 46420000 64481000 1162600000 985760000 1176100000 16045 133 15540 300977;300978;300979;300980;300981;300982;300983;300984;300985;300986;300987;300988;300989;300990;300991;300992;300993;300994;300995;300996;300997;300998;300999;301000;301001;301002;301003;301004;301005;301006;301007;301008;301009;301010;301011;301012;301013;301014;301015;301016;301017;301018;301019;301020;301021;301022;301023;301024;301025;301026;301027;301028;301029;301030;301031;301032;301033;301034;301035;301036;301037;301038;301039;301040;301041;301042;301043;301044 184481;184482;184483;184484;184485;184486;184487;184488;184489;184490;184491;184492;184493;184494;184495;184496;184497;184498;184499;184500;184501;184502;184503;184504;184505;184506;184507;184508;184509;184510;184511;184512;184513;184514;184515;184516;184517;184518;184519;184520;184521;184522;184523;184524;184525;184526;184527;184528;184529;184530;184531;184532;184533;184534;184535;184536;184537;184538;184539 184514 58 NWVMIPHVTHFDKTDITELEAFR Oxidation (M) 2814.3799 0.37993501 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 4 5 4 1 4 2 3 46.131 44.469 3;4;5 3.9643E-07 17997 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 108.4 105.58 234540000 0 0 0 39520000 52110000 43725000 0 0 0 0 1151100 0 0 0 0 0 0 0 0 0 0 46851000 28300000 22887000 16046 133 15540 301045;301046;301047;301048;301049;301050;301051;301052;301053;301054;301055;301056;301057;301058;301059;301060;301061;301062;301063;301064;301065;301066;301067 184540;184541;184542;184543;184544;184545;184546;184547;184548;184549;184550;184551;184552;184553;184554;184555;184556;184557;184558 184541 45 19 NWVMIPHVTHFDKTDITELEAFRK Unmodified 2926.48 0.47998341 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 4 6 6 1 1 1 3 3 5 1 3 3 3 2 1 1 6 7 9 42.034 40.307 2;3;4;5;6 8.4304E-31 15861 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 197.92 197.77 19138000000 7886200 0 0 2490400000 3198400000 2895700000 6546800 4224500 5923700 182520000 215230000 368100000 0 2626500 0 150190000 126070000 161770000 10582000 4593100 10413000 3280700000 3328000000 2688600000 16047 133 15541 301068;301069;301070;301071;301072;301073;301074;301075;301076;301077;301078;301079;301080;301081;301082;301083;301084;301085;301086;301087;301088;301089;301090;301091;301092;301093;301094;301095;301096;301097;301098;301099;301100;301101;301102;301103;301104;301105;301106;301107;301108;301109;301110;301111;301112;301113;301114;301115;301116;301117;301118;301119;301120;301121;301122;301123;301124;301125;301126;301127;301128;301129;301130;301131;301132;301133;301134 184559;184560;184561;184562;184563;184564;184565;184566;184567;184568;184569;184570;184571;184572;184573;184574;184575;184576;184577;184578;184579;184580;184581;184582;184583;184584;184585;184586;184587;184588;184589;184590;184591;184592;184593;184594;184595;184596;184597;184598;184599;184600;184601;184602;184603;184604;184605;184606;184607;184608;184609;184610;184611 184578 53 NWVMIPHVTHFDKTDITELEAFRK Oxidation (M) 2942.4749 0.47489803 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 5 6 4 3 2 3 5 5 5 41.256 39.217 3;4;5;6 2.9264E-15 13579 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 145.28 145.05 1080000000 0 0 0 189200000 192490000 196420000 0 0 0 31937000 16150000 15889000 0 0 0 0 0 0 0 0 0 176590000 124110000 137160000 16048 133 15541 301135;301136;301137;301138;301139;301140;301141;301142;301143;301144;301145;301146;301147;301148;301149;301150;301151;301152;301153;301154;301155;301156;301157;301158;301159;301160;301161;301162;301163;301164;301165;301166;301167;301168;301169;301170;301171;301172 184612;184613;184614;184615;184616;184617;184618;184619;184620;184621;184622;184623;184624;184625;184626;184627;184628;184629;184630;184631;184632;184633;184634;184635;184636 184633 45 25 NWVSPVDAIVER Unmodified 1383.7147 0.71466402 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 3 3 3 3 3 3 3 3 3 39.329 37.762 2;3 1.2932E-06 20693 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 179.42 176.17 2441100000 224250000 216680000 202760000 0 0 0 62769000 61867000 240150000 0 0 0 216950000 198680000 197620000 0 0 0 289080000 253910000 276390000 0 0 0 16049 170 15542 301173;301174;301175;301176;301177;301178;301179;301180;301181;301182;301183;301184;301185;301186;301187;301188;301189;301190;301191;301192;301193;301194;301195;301196;301197;301198;301199;301200;301201;301202;301203;301204;301205;301206 184637;184638;184639;184640;184641;184642;184643;184644;184645;184646;184647;184648;184649;184650;184651;184652 184648 16 NWVSPVDAIVERDEK Unmodified 1755.8792 0.87916317 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.368 36.562 3 0.00014556 17648 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 74.966 70.724 120100000 8008400 6570800 9649600 1358600 1451100 1427900 9231500 8170200 8737800 0 2125000 1004000 8374300 6930700 7773100 0 0 0 8154100 10807000 15571000 1291500 1622000 1840200 16050 170 15543 301207;301208;301209;301210;301211;301212;301213;301214;301215;301216;301217;301218;301219;301220;301221;301222;301223;301224;301225;301226 184653;184654 184653 2 NYAEGAGGFFK Unmodified 1159.5298 0.52982336 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 29.829 28.455 2 2.6846E-06 13229 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 109.11 106.27 1819800000 0 0 0 2789600 1809500 1203900 174090000 213030000 195670000 2838000 2754000 2538700 282120000 282560000 309210000 4663800 3239400 4133500 0 325140000 0 3578800 4814600 3589600 16051 38 15544 301227;301228;301229;301230;301231;301232;301233;301234;301235;301236;301237;301238;301239;301240;301241;301242;301243;301244;301245;301246;301247;301248 184655;184656;184657;184658;184659;184660;184661;184662;184663 184658 9 NYAEGAGGFFKGIDALPLTGQYTHYALNKK Unmodified 3243.6353 0.63529807 38 P00634 phoA Alkaline phosphatase yes yes 0 0 2 By MS/MS By matching By matching 1 1 1 44.017 42.468 4 0.097657 21263 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 29.617 27.831 28219000 0 0 0 0 0 0 16103000 0 0 0 0 0 6927100 0 5188500 0 0 0 0 0 0 0 0 0 16052 38 15545 301249;301250;301251 184664 184664 1 NYAGRPTALTK Unmodified 1190.6408 0.6407708 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.1 12.873 2 0.00049918 3042 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 93.096 82.865 207280000 44855000 39912000 39334000 2748000 2324100 2701400 8924300 10401000 6624900 4148300 2992600 3351300 7080200 4632000 6022700 0 0 0 6623900 6777100 7826500 0 0 0 16053 405 15546 301252;301253;301254;301255;301256;301257;301258;301259;301260;301261;301262;301263;301264;301265;301266;301267;301268;301269 184665 184665 1 NYAGYGLPQADLIQEGNIGLMK Unmodified 2364.1784 0.17838166 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 50.118 50.174 2;3 1.6022E-28 19324 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 149.53 148.13 213730000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 86438000 66277000 61011000 0 0 0 0 0 0 16054 1004 15547 301270;301271;301272;301273;301274;301275 184666;184667;184668;184669;184670;184671 184666 6 NYAVGMLFLNK Unmodified 1268.6587 0.65872905 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.853 44.363 2 0.034017 22074 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 67.993 66.295 157420000 34359000 28700000 31728000 0 0 0 9837700 11685000 9171900 0 0 0 6008300 5141500 0 0 0 0 6276300 7674800 6839900 0 0 0 16055 218 15548 301276;301277;301278;301279;301280;301281;301282;301283;301284;301285;301286 184672;184673;184674 184673 0 NYAVGMLFLNKDPELAAAAR Unmodified 2163.1147 0.11465919 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 2 45.897 44.412 2;3 1.4202E-45 21584 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 295.01 286.19 743520000 134950000 138090000 137270000 0 0 0 50487000 48458000 50271000 0 0 0 27047000 22819000 26731000 0 0 0 32290000 41115000 33987000 0 0 0 16056 218 15549 301287;301288;301289;301290;301291;301292;301293;301294;301295;301296;301297;301298;301299;301300;301301;301302;301303;301304;301305;301306;301307;301308 184675;184676;184677;184678;184679;184680;184681 184680 7 NYCLICWK Unmodified 1155.5205 0.52052101 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.99 36.209 2 0.00075894 17438 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.37 124.37 812780000 96786000 83837000 0 0 0 0 97505000 100620000 0 0 631250 0 106330000 99595000 0 0 0 0 0 111710000 115220000 0 548100 0 16057 1024 15550 301309;301310;301311;301312;301313;301314;301315;301316;301317;301318;301319;301320;301321 184682;184683;184684;184685;184686;184687;184688;184689 184684 7 NYDQVPANKPIVDAIK Unmodified 1783.9468 0.9468488 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 26.783 25.7 2;3 1.0532E-08 11569 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 163.71 150.71 569970000 185220000 186420000 171900000 0 0 0 4175300 0 4656800 0 0 0 2625400 0 0 0 0 0 4686000 5241800 5052300 0 0 0 16058 774 15551 301322;301323;301324;301325;301326;301327;301328;301329;301330;301331;301332;301333 184690;184691;184692;184693;184694;184695 184693 6 NYDTYFAVVDR Unmodified 1361.6252 0.62518031 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.649 37.596 2 3.1773E-05 18351 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.88 117.25 595900000 36822000 35151000 40595000 0 0 0 146850000 137430000 143890000 18713000 14463000 16055000 0 0 0 0 0 0 0 0 0 3305200 0 2633300 16059 522 15552 301334;301335;301336;301337;301338;301339;301340;301341;301342;301343;301344 184696;184697;184698;184699;184700;184701;184702;184703 184701 8 NYELIISAAR Unmodified 1148.619 0.61897272 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.975 33.259 2 3.785E-05 12672 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 141.48 127.32 155370000 2251000 2344200 3025200 1993000 913180 1456500 13277000 10917000 10660000 7361100 5855500 6763000 11131000 9848900 8019900 0 0 0 15919000 13834000 13258000 5643700 5359800 5541600 16060 1494 15553 301345;301346;301347;301348;301349;301350;301351;301352;301353;301354;301355;301356;301357;301358;301359;301360;301361;301362;301363;301364;301365 184704;184705;184706;184707;184708;184709;184710;184711;184712;184713;184714;184715;184716;184717 184711 14 NYETPDAVEASQK Unmodified 1450.6576 0.65760265 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.356 17.837 2 8.2072E-09 6597 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 164.1 155.88 545530000 45737000 38722000 39638000 1441600 970240 1646800 46844000 46552000 45855000 2951600 2342300 2744300 34118000 34294000 31781000 2164500 0 0 51858000 57835000 53379000 1905700 1416300 1334300 16061 787 15554 301366;301367;301368;301369;301370;301371;301372;301373;301374;301375;301376;301377;301378;301379;301380;301381;301382;301383;301384;301385;301386;301387 184718;184719;184720;184721;184722;184723;184724;184725;184726;184727;184728;184729;184730;184731;184732 184722 13 NYFDLVAR Unmodified 996.50288 0.50288033 1551 P41407 azoR FMN-dependent NADH-azoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.914 36.24 2 8.8899E-05 17881 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.34 129.54 632300000 79039000 68704000 70325000 0 0 0 58008000 59927000 61875000 0 0 0 31520000 29352000 26894000 0 0 0 54764000 47997000 43894000 0 0 0 16062 1551 15555 301388;301389;301390;301391;301392;301393;301394;301395;301396;301397;301398;301399 184733;184734;184735;184736;184737;184738;184739;184740;184741;184742;184743;184744 184734 12 NYFNQQPAYVLR Unmodified 1511.7521 0.75211216 624 P0AB26 yceB Uncharacterized lipoprotein YceB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 35.951 33.822 2 8.8451E-05 16470 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128 126.4 51556000 0 0 7753100 0 0 0 8396400 10497000 9710500 4884300 5232400 5082300 0 0 0 0 0 0 0 0 0 0 0 0 16063 624 15556 301400;301401;301402;301403;301404;301405;301406;301407 184745;184746 184745 2 NYGAAQPGR Unmodified 932.44643 0.44642809 805 P0ADT2 ygiB UPF0441 protein YgiB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 11.257 11.811 2 6.9701E-05 2497 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 143.94 127.84 96371000 9899700 6540800 9618700 0 0 0 0 0 0 14577000 12216000 11656000 20248000 0 11614000 0 0 0 0 0 0 0 0 0 16064 805 15557 301408;301409;301410;301411;301412;301413;301414;301415 184747;184748;184749 184748 3 NYGITAPIDVHLMVKPVDR Unmodified 2137.1354 0.13539463 976 P0AG07 rpe Ribulose-phosphate 3-epimerase yes yes 0 0 1 By MS/MS 1 39.152 37.699 3 6.4125E-08 17557 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 110.96 105.86 22660000 0 0 0 0 0 0 0 0 0 0 0 0 0 22660000 0 0 0 0 0 0 0 0 0 0 16065 976 15558 301416 184750 184750 1 NYGSLIGEATAER Unmodified 1379.6681 0.66810776 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.465 29.115 2 9.0556E-24 13572 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 230.95 225.31 1957300000 170450000 151180000 147330000 20107000 23705000 24826000 0 0 154270000 82718000 73195000 71314000 107200000 110290000 113080000 21735000 12985000 14467000 162280000 190340000 185560000 43511000 35264000 41533000 16066 564 15559 301417;301418;301419;301420;301421;301422;301423;301424;301425;301426;301427;301428;301429;301430;301431;301432;301433;301434;301435;301436;301437;301438;301439;301440 184751;184752;184753;184754;184755;184756;184757;184758;184759;184760;184761;184762;184763;184764;184765;184766;184767;184768;184769;184770;184771;184772;184773;184774 184764 24 NYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQR Unmodified 3659.6151 0.6150925 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.571 54.162 3 9.6E-26 22058 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 177.53 175.61 110180000 4305800 4241500 0 6336000 6553500 4540900 0 0 0 27318000 24034000 19602000 3533100 4504600 0 0 0 0 0 0 0 0 5205100 0 16067 144 15560 301441;301442;301443;301444;301445;301446;301447;301448;301449;301450;301451 184775;184776;184777 184775 3 NYHIAVLPGDGIGPEVMTQALK Unmodified 2322.2042 0.20420248 1336 P30125 leuB 3-isopropylmalate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 47.421 46.129 3 5.5412E-05 22458 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 83.082 74.768 137880000 46202000 45626000 36874000 0 0 0 0 0 0 0 0 0 0 5486300 3695100 0 0 0 0 0 0 0 0 0 16068 1336 15561 301452;301453;301454;301455;301456 184778;184779;184780 184780 3 NYIDIFDGGPTLECDIDR Unmodified 2111.947 0.94698474 831 P0AE37 astA Arginine N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 53.148 51.742 2 4.8611E-45 25309 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 257.91 245.52 75670000 25108000 25588000 24974000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16069 831 15562 301457;301458;301459 184781;184782;184783 184783 3 NYITESGK Unmodified 910.43961 0.43961137 370 P0A7T7 rpsR 30S ribosomal protein S18 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 12.596 13.286 1;2 0.001419 3681 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 109.01 92.048 3916700000 571010000 487880000 522130000 19803000 23300000 20460000 180570000 153820000 172730000 68582000 56773000 54385000 218060000 192580000 188640000 0 27264000 0 280650000 299480000 289300000 32927000 30658000 25652000 16070 370 15563 301460;301461;301462;301463;301464;301465;301466;301467;301468;301469;301470;301471;301472;301473;301474;301475;301476;301477;301478;301479;301480;301481;301482;301483;301484;301485;301486;301487;301488;301489;301490;301491;301492;301493;301494;301495;301496;301497;301498;301499;301500;301501;301502;301503 184784;184785;184786;184787;184788;184789;184790;184791;184792;184793;184794;184795;184796;184797;184798;184799;184800 184798 17 NYLGIDGIPEFGR Unmodified 1449.7252 0.72522871 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.934 47.589 2 2.6789E-07 22178 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 178.08 174.06 4314700000 487670000 446150000 404820000 1726900 1543200 0 366470000 346460000 360300000 0 0 0 291730000 286740000 282100000 0 0 0 350800000 364570000 323580000 0 0 0 16071 31 15564 301504;301505;301506;301507;301508;301509;301510;301511;301512;301513;301514;301515;301516;301517 184801;184802;184803;184804;184805;184806;184807;184808;184809;184810;184811 184811 11 NYLQNQEGFVHICR Unmodified 1776.8366 0.83658685 32 P00547 thrB Homoserine kinase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 28.707 27.541 2 3.0879E-14 12650 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 180.36 160.15 44830000 0 0 15463000 0 0 0 0 0 3868200 0 0 0 4079800 3958300 3175800 0 0 0 6772300 0 7512200 0 0 0 16072 32 15565 301518;301519;301520;301521;301522;301523;301524 184812;184813 184812 1 NYLSDAFK Unmodified 956.46035 0.46034682 69 P02916 malF Maltose transport system permease protein MalF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.056 29.601 2 0.0033979 14304 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 92.47 81.597 224470000 3214100 2245700 3349000 677580 887410 813120 21236000 20334000 18540000 4724200 5911300 6371600 15233000 16004000 14089000 0 1128700 736550 26961000 24234000 23151000 5071200 5073100 4488500 16073 69 15566 301525;301526;301527;301528;301529;301530;301531;301532;301533;301534;301535;301536;301537;301538;301539;301540;301541;301542;301543;301544;301545;301546;301547 184814;184815;184816;184817;184818;184819;184820;184821;184822;184823;184824;184825 184817 12 NYLTEHPEATDPR Unmodified 1541.711 0.71103521 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 17.013 17.544 2;3 4.3019E-10 6383 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 215.08 207.87 8958200000 592370000 552820000 500580000 31827000 20415000 18235000 1314900000 1242800000 1297700000 84270000 76394000 53805000 491800000 426860000 483270000 2264000 874720 948390 618140000 592890000 534040000 9135100 7895600 3925500 16074 1045 15567 301548;301549;301550;301551;301552;301553;301554;301555;301556;301557;301558;301559;301560;301561;301562;301563;301564;301565;301566;301567;301568;301569;301570;301571;301572;301573;301574;301575;301576;301577;301578;301579;301580;301581;301582;301583;301584;301585;301586;301587;301588;301589;301590;301591 184826;184827;184828;184829;184830;184831;184832;184833;184834;184835;184836;184837;184838;184839;184840;184841;184842;184843;184844;184845;184846;184847;184848;184849;184850;184851;184852;184853;184854;184855;184856;184857;184858;184859;184860;184861;184862;184863;184864 184836 39 NYLTEHPEATDPRDYLQSAK Unmodified 2347.1081 0.10805348 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 1 31.549 29.838 3;4 0.0037458 11699 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 51.524 43.721 113710000 0 0 0 11759000 14847000 16806000 0 0 0 16377000 19694000 15431000 0 0 0 2300100 2262900 0 0 0 0 3797900 7706000 2731200 16075 1045 15568 301592;301593;301594;301595;301596;301597;301598;301599;301600;301601;301602;301603;301604;301605;301606;301607;301608;301609 184865;184866;184867;184868;184869;184870;184871 184865 7 NYLVAQGR Unmodified 919.48756 0.48756462 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 16.12 16.621 2 6.3782E-06 4475 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 148.21 103.67 169950000 4452900 5254600 4602600 0 0 0 5613600 0 0 0 0 0 0 0 0 67490000 73311000 0 0 0 9225400 0 0 0 16076 1005 15569 301610;301611;301612;301613;301614;301615;301616;301617 184872;184873;184874;184875 184874 3 NYRPVADAVAMLLAGNK Oxidation (M) 1817.9458 0.94580295 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 2 2 4 4 5 1 1 1 3 44.543 43.56 2;3 8.5577E-09 17648 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 126.32 117.59 803630000 0 0 0 0 0 0 8012400 0 7750800 82523000 84021000 70880000 0 4910400 0 137970000 163420000 189710000 0 0 3909900 4031500 21788000 24696000 16077 1616 15570 301618;301619;301620;301621;301622;301623;301624;301625;301626;301627;301628;301629;301630;301631;301632;301633;301634;301635;301636;301637;301638;301639;301640;301641;301642;301643;301644;301645;301646;301647 184876;184877;184878;184879;184880;184881;184882;184883;184884;184885;184886;184887;184888;184889;184890;184891;184892;184893;184894;184895;184896;184897;184898;184899;184900 184890 567 25 NYRPVADAVAMLLAGNK Unmodified 1801.9509 0.95088832 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 1 1 2 1 2 2 3 2 2 2 2 1 1 1 48.722 47.593 2;3 3.4343E-11 23270 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 177.42 156.58 18402000000 50089000 35789000 50164000 0 0 0 64830000 54936000 55785000 1461200000 1605200000 1710300000 58898000 9827700 53302000 2630600000 2849700000 3926600000 69980000 77312000 71362000 1182200000 1257700000 1126100000 16078 1616 15570 301648;301649;301650;301651;301652;301653;301654;301655;301656;301657;301658;301659;301660;301661;301662;301663;301664;301665;301666;301667;301668;301669;301670;301671;301672;301673;301674;301675;301676;301677;301678;301679;301680;301681;301682 184901;184902;184903;184904;184905;184906;184907;184908;184909;184910;184911;184912;184913;184914;184915;184916;184917;184918;184919;184920;184921;184922;184923;184924;184925;184926;184927;184928 184919 27 NYSIQSIGPMPGSR Unmodified 1505.7297 0.72966216 1607 P52129 rnlA mRNA endoribonuclease LS yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 34.699 32.313 2 4.1547E-06 12841 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 116.55 111.93 17288000 0 0 0 0 0 0 4586700 0 0 7616100 5085500 0 0 0 0 0 0 0 0 0 0 0 0 0 16079 1607 15571 301683;301684;301685 184929;184930 184929 2 NYSPYYNTIDDLK Unmodified 1604.7359 0.73585297 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 36.48 34.151 2 0.00011682 13699 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 110.84 104.17 15749000 0 0 0 0 0 0 0 0 0 4689000 4191000 3824100 0 0 0 0 0 0 0 0 0 0 940840 2104200 + 16080 16 15572 301686;301687;301688;301689;301690 184931;184932 184931 2 NYSPYYNTIDDLKDQIVDLTVGNNK Unmodified 2901.4032 0.40323245 16 CON__P35527 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 2 1 1 1 1 1 1 2 54.149 53.013 2;3 1.4771E-49 21445 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 281.61 277.71 777000000 0 0 0 9669300 9992700 10063000 0 0 0 197820000 181140000 184430000 0 0 0 7302800 9496400 11995000 0 0 0 51670000 46668000 56753000 + 16081 16 15573 301691;301692;301693;301694;301695;301696;301697;301698;301699;301700;301701;301702;301703;301704;301705 184933;184934;184935;184936;184937;184938;184939;184940;184941;184942;184943 184937 11 NYTAGGEGGATLINDK Unmodified 1579.7478 0.74781464 1310 P27833 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.499 21.945 2 1.1984E-23 9326 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 203.61 197.61 206390000 12417000 12321000 12973000 0 0 0 15321000 15545000 15343000 0 0 0 17036000 16781000 17075000 0 0 0 23161000 24820000 23599000 0 0 0 16082 1310 15574 301706;301707;301708;301709;301710;301711;301712;301713;301714;301715;301716;301717 184944;184945;184946;184947;184948;184949;184950;184951;184952;184953;184954;184955 184948 12 NYTDDVEFSCEDAGR Unmodified 1776.6897 0.68970742 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 28.605 27.485 2 4.4452E-20 12624 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 208.79 208.79 80119000 22772000 27319000 21810000 0 0 0 0 0 2400800 0 0 0 2602000 3215800 0 0 0 0 0 0 0 0 0 0 16083 204 15575 301718;301719;301720;301721;301722;301723 184956;184957;184958 184957 3 NYTGDILNFETATELLHDSGVK Unmodified 2436.1809 0.18088408 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.145 51.705 2;3 7.5591E-53 25320 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 329.65 323.35 3990600000 128290000 116480000 130530000 0 0 0 483370000 544040000 434620000 0 0 0 449370000 450000000 419560000 0 0 0 268790000 271840000 293750000 0 0 0 16084 1806 15576 301724;301725;301726;301727;301728;301729;301730;301731;301732;301733;301734;301735;301736;301737;301738;301739;301740;301741;301742;301743;301744;301745;301746;301747 184959;184960;184961;184962;184963;184964;184965;184966;184967;184968;184969;184970;184971;184972;184973;184974;184975;184976 184966 18 NYTIGDVIAR Unmodified 1120.5877 0.58767259 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.775 31.336 2 0.00027971 15108 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 130.75 118.22 2614800000 233870000 194170000 170240000 1941900 1655500 1751100 224790000 219720000 212390000 0 0 0 202580000 181610000 184240000 0 0 0 249040000 260510000 276290000 0 0 0 16085 170 15577 301748;301749;301750;301751;301752;301753;301754;301755;301756;301757;301758;301759;301760;301761;301762 184977;184978;184979;184980;184981;184982;184983;184984;184985;184986;184987;184988 184978 12 NYTITQR Unmodified 894.45593 0.45593014 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.365 14.057 2 0.05176 4278 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 62.717 41.171 96664000 9211300 0 0 1367500 1155800 1492900 6386900 5133100 3375100 4160800 3597700 3174800 6976100 4913500 6079100 0 0 0 10355000 11664000 10944000 2755100 1801100 2119000 16086 477 15578 301763;301764;301765;301766;301767;301768;301769;301770;301771;301772;301773;301774;301775;301776;301777;301778;301779;301780;301781 184989;184990 184990 2 NYTPYEGDESFLAGATEATTTLWDK Unmodified 2779.2501 0.25008585 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 54.425 52.986 2;3 2.6238E-40 26219 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 270.32 268.49 5937800000 312960000 273860000 240250000 0 975100 2398900 688340000 595660000 569140000 0 0 0 843980000 681900000 428610000 0 0 0 420100000 435700000 443870000 0 0 0 16087 212 15579 301782;301783;301784;301785;301786;301787;301788;301789;301790;301791;301792;301793;301794;301795;301796;301797;301798;301799;301800;301801;301802;301803;301804;301805;301806;301807 184991;184992;184993;184994;184995;184996;184997;184998;184999;185000;185001;185002;185003;185004;185005 184993 15 NYVVYETTR Unmodified 1143.556 0.55603811 1072 P11557 damX Cell division protein DamX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.07 20.168 2 0.0012471 6444 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 89.401 85.466 113560000 0 0 0 4433500 4599900 4442900 0 0 0 16014000 14372000 12567000 0 18976000 13560000 2440600 1801600 1553100 0 0 0 6504700 6046600 6250700 16088 1072 15580 301808;301809;301810;301811;301812;301813;301814;301815;301816;301817;301818;301819;301820;301821 185006;185007;185008;185009;185010;185011;185012;185013;185014;185015 185007 9 NYWSALDSDK Unmodified 1197.5302 0.53021729 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 31.152 29.755 2 0.00023877 13326 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 117.7 116.44 177770000 0 6203700 0 0 0 0 18796000 15736000 13788000 0 0 0 17183000 20005000 17397000 0 0 0 23430000 22853000 22374000 0 0 0 16089 1496 15581 301822;301823;301824;301825;301826;301827;301828;301829;301830;301831 185016;185017;185018;185019;185020;185021;185022;185023;185024 185024 9 NYWSALDSDKK Unmodified 1325.6252 0.62518031 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.785 22.256 2;3 1.0454E-05 9815 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 148.94 146.91 1449200000 62963000 56429000 54952000 0 0 0 109630000 105540000 123640000 0 0 0 141080000 119380000 118790000 0 0 0 176360000 188470000 191980000 0 0 0 16090 1496 15582 301832;301833;301834;301835;301836;301837;301838;301839;301840;301841;301842;301843;301844;301845;301846;301847;301848;301849;301850;301851;301852;301853;301854;301855 185025;185026;185027;185028;185029;185030;185031;185032;185033;185034;185035;185036;185037;185038;185039;185040;185041;185042;185043;185044 185027 20 NYYPTTDGR Unmodified 1085.4778 0.47778779 487 P0A944 rimI Ribosomal-protein-alanine acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.155 16.024 2 0.00063648 5359 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.14 95.548 27532000 0 5435000 0 0 0 0 4061200 0 0 0 0 0 3010200 3560000 2752400 0 0 0 0 4036800 4676000 0 0 0 16091 487 15583 301856;301857;301858;301859;301860;301861;301862;301863;301864 185045;185046;185047 185046 3 PAAEPTPPGAQPTAPGSLK Unmodified 1785.9261 0.92611336 1174 P21179 katE Catalase HPII yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 22.967 22.298 2 3.9012E-07 9441 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.81 132.09 18408000 7667400 0 7125600 0 0 0 0 0 3615000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16092 1174 15584 301865;301866;301867 185048 185048 1 PAAQFVK Unmodified 759.42792 0.42792448 568 P0AA04 ptsH Phosphocarrier protein HPr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.386 14.174 2 0.0010644 4465 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.5 118.82 36250000000 2680400000 2499000000 2130100000 0 1445800 1110300 3584300000 3577400000 3547200000 1271000 1422200 0 2965700000 3223000000 2824000000 0 0 0 3043300000 3416700000 2753300000 0 0 0 16093 568 15585 301868;301869;301870;301871;301872;301873;301874;301875;301876;301877;301878;301879;301880;301881;301882;301883 185049;185050;185051;185052;185053;185054;185055;185056;185057;185058;185059;185060;185061;185062 185055 14 PAAQQSEDELLR Unmodified 1355.6681 0.66810776 711 P0ACA1 yibF Uncharacterized GST-like protein YibF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.889 21.229 2 6.3266E-31 8659 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 262.63 246.09 313070000 41182000 36668000 26407000 0 0 0 18882000 21192000 25980000 0 0 0 22714000 14819000 16032000 0 0 0 29066000 29679000 30448000 0 0 0 16094 711 15586 301884;301885;301886;301887;301888;301889;301890;301891;301892;301893;301894;301895 185063;185064;185065;185066;185067;185068 185063 6 PAARFNAEVDEPRPGLR Unmodified 1893.9809 0.9809429 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 19.455 19.87 4 0.16287 7996 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 9.4152 7.546 199420000 0 0 0 0 0 0 45331000 20130000 32274000 0 0 0 0 0 2521100 0 0 0 33462000 27803000 37895000 0 0 0 16095 1364 15587 301896;301897;301898;301899;301900;301901;301902 185069 185069 1 PACELRPATQYDTDAVYALICELK Unmodified 2796.3463 0.34625162 1131 P16691 phnO Protein PhnO yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.48 52.043 3 1.5E-10 25296 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.78 129.38 170470000 9477900 8324200 11516000 0 0 0 18894000 19982000 16723000 0 1588400 3917700 8151400 9372600 7409600 0 0 0 16253000 20743000 18115000 0 0 0 16096 1131 15588 301903;301904;301905;301906;301907;301908;301909;301910;301911;301912;301913;301914;301915;301916 185070 185070 1 PADAELEMMVR Unmodified 1260.5842 0.58424348 1686 P64559 cptB Antitoxin CptB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 35.414 33.853 2 0.020727 16294 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.398 57.718 42110000 0 5496100 6748700 0 0 0 0 7477100 5294000 0 0 0 0 0 0 0 0 0 6133500 5830600 5130000 0 0 0 16097 1686 15589 301917;301918;301919;301920;301921;301922;301923 185071;185072;185073;185074 185073 0 PADDLLNLEGVDR Unmodified 1425.71 0.70997257 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 23.977 22.696 4 0.15887 8189 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 15.545 5.2191 22253000 0 0 0 0 0 0 0 0 0 8257500 7124100 4391100 0 0 0 0 0 0 0 0 0 2480700 0 0 16098 935 15590 301924;301925;301926;301927 185075 185075 1 PADFDAR Unmodified 790.36097 0.36096712 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.776 13.616 2 0.040602 4021 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.757 64.757 185210000 16593000 13488000 14206000 0 0 0 17293000 17007000 17201000 0 0 0 16976000 11583000 12097000 0 0 0 13392000 15559000 19818000 0 0 0 16099 62 15591 301928;301929;301930;301931;301932;301933;301934;301935;301936;301937;301938;301939 185076;185077;185078 185077 2 PADIIHVPFNDLHAVK Unmodified 1784.9574 0.95735391 1150 P18335 argD Acetylornithine/succinyldiaminopimelate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 1 1 2 1 34.935 33.448 3;4 1.2901E-05 15855 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 65.113 62.562 309460000 53361000 45101000 35451000 0 0 0 23665000 25054000 24948000 0 0 0 10173000 15703000 12871000 0 0 0 20653000 20511000 21970000 0 0 0 16100 1150 15592 301940;301941;301942;301943;301944;301945;301946;301947;301948;301949;301950;301951;301952;301953;301954;301955;301956;301957;301958 185079;185080;185081;185082;185083;185084;185085;185086;185087;185088;185089 185085 10 PAEAVEYISR Unmodified 1133.5717 0.57168818 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 22.338 21.813 2 0.0025038 9433 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 78.516 70.949 165360000 0 9438800 35295000 0 0 0 17656000 0 14623000 0 0 0 13641000 12201000 10953000 0 0 0 15658000 18319000 17570000 0 0 0 16101 1788 15593 301959;301960;301961;301962;301963;301964;301965;301966;301967;301968 185090;185091;185092;185093;185094;185095 185091 2 PAESFVPHNLAGEGPR Unmodified 1676.8271 0.82706802 1325 P28905 holC DNA polymerase III subunit chi yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.247 24.204 3 2.9026E-05 10349 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 85.493 83.254 224230000 27872000 29315000 23705000 0 0 0 17770000 18236000 18795000 0 0 0 13426000 11105000 11321000 0 0 0 13822000 21652000 17215000 0 0 0 16102 1325 15594 301969;301970;301971;301972;301973;301974;301975;301976;301977;301978;301979;301980 185096;185097;185098 185097 3 PAFDEGMQQK Unmodified 1149.5125 0.51245874 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.002 17.751 2 9.1741E-09 6301 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 184.49 137.41 215660000 26669000 27788000 20790000 0 0 0 25079000 22832000 22967000 0 0 0 7832600 6993500 12122000 0 0 0 14110000 14690000 13790000 0 0 0 16103 1233 15595 301981;301982;301983;301984;301985;301986;301987;301988;301989;301990;301991;301992 185099;185100;185101;185102;185103;185104 185103 6 PAGAYLDIVR Unmodified 1073.5869 0.58694431 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.888 31.436 2 2.5203E-05 14838 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.19 130.09 491270000 53194000 39477000 38618000 685100 0 0 46281000 43008000 38075000 0 0 0 38419000 39723000 35823000 0 0 0 39970000 39963000 38029000 0 0 0 16104 715 15596 301993;301994;301995;301996;301997;301998;301999;302000;302001;302002;302003;302004;302005 185105;185106;185107;185108;185109;185110;185111;185112;185113 185109 9 PAGQVIAQYYEFLR Unmodified 1653.8515 0.85149185 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 5 1 4 4 4 2 2 2 2 2 2 3 3 3 49.989 48.593 2;3 1.8057E-26 23375 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 285.83 281.64 14350000000 305640000 1586100000 1524100000 0 0 710560 3544400000 3223500000 3418800000 13041000 14221000 15101000 148510000 127610000 135720000 0 0 0 25876000 128200000 138040000 0 0 0 16105 1755;1756 15597 302006;302007;302008;302009;302010;302011;302012;302013;302014;302015;302016;302017;302018;302019;302020;302021;302022;302023;302024;302025;302026;302027;302028;302029;302030;302031;302032;302033;302034;302035;302036;302037;302038;302039;302040;302041;302042;302043;302044;302045;302046;302047 185114;185115;185116;185117;185118;185119;185120;185121;185122;185123;185124;185125;185126;185127;185128;185129;185130;185131;185132;185133;185134;185135;185136;185137;185138;185139;185140;185141;185142;185143;185144;185145;185146;185147;185148;185149;185150;185151;185152 185135 37 PAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR Unmodified 4163.0826 0.082637363 538 P0A9M5 gpt Xanthine phosphoribosyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 1 1 1 2 2 2 2 2 2 55.491 54.019 3;4 1.7352E-17 26617 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.12 118.57 1076900000 96147000 90948000 86127000 0 0 0 68378000 65106000 30553000 0 3579200 6404600 102370000 78365000 77403000 0 0 0 120830000 113490000 137250000 0 0 0 16106 538 15598 302048;302049;302050;302051;302052;302053;302054;302055;302056;302057;302058;302059;302060;302061;302062;302063;302064;302065;302066;302067;302068;302069;302070;302071;302072 185153;185154;185155;185156;185157;185158;185159;185160;185161 185157 9 PAGVLCELTNDDGTMAR Unmodified 1818.824 0.82403283 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 37.455 35.733 2 3.1883E-40 17727 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 267.93 250.56 120190000 0 0 5108500 0 0 0 20240000 17012000 20153000 0 0 0 11678000 8989400 8332800 0 0 0 8966300 8766500 10942000 0 0 0 16107 348 15599 302073;302074;302075;302076;302077;302078;302079;302080;302081;302082 185162;185163;185164 185162 3 PAHQQQVADILR Unmodified 1374.7368 0.73679645 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 1 1 1 1 18.283 18.913 2;3 2.6104E-06 7037 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.78 129.42 240150000 45073000 42559000 44693000 0 0 0 7566500 0 6269200 0 0 0 16675000 16184000 13348000 0 0 0 16273000 15639000 15866000 0 0 0 16108 696 15600 302083;302084;302085;302086;302087;302088;302089;302090;302091;302092;302093;302094;302095;302096 185165;185166;185167;185168;185169;185170;185171;185172;185173;185174;185175 185170 11 PAHQQQVADILRDPEASENDK Unmodified 2360.1357 0.13566522 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 22.435 21.932 3;4 1.1797E-34 9268 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 209.01 198.33 627870000 119040000 97218000 95229000 0 0 0 8133900 10827000 7784300 0 0 0 36796000 36155000 34165000 0 0 0 65352000 50030000 67142000 0 0 0 16109 696 15601 302097;302098;302099;302100;302101;302102;302103;302104;302105;302106;302107;302108;302109;302110;302111;302112;302113;302114;302115;302116;302117 185176;185177;185178;185179;185180;185181;185182;185183;185184;185185;185186;185187;185188;185189;185190;185191 185181 16 PAHQQQVADILRDPEASENDKYVALQFLR Unmodified 3350.7008 0.70075188 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.933 40.234 4;5 9.9535E-23 19728 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.66 155.19 556780000 82472000 88849000 75605000 0 0 0 23536000 20918000 24912000 0 0 0 32811000 31312000 30905000 0 0 0 45001000 51426000 49032000 0 0 0 16110 696 15602 302118;302119;302120;302121;302122;302123;302124;302125;302126;302127;302128;302129;302130;302131;302132;302133;302134;302135;302136;302137;302138;302139;302140;302141 185192;185193;185194;185195;185196;185197;185198;185199;185200;185201 185196 10 PAIGDNPFVVVLPDVVIDDASADPLR Unmodified 2703.4119 0.41194665 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 1 2 2 1 55.789 54.38 2;3 2.6335E-84 26795 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 307.22 288.01 1416300000 60437000 52939000 130330000 0 0 0 122880000 103480000 122660000 0 0 0 122060000 145360000 158030000 0 2438300 0 140680000 198040000 56998000 0 0 0 16111 583 15603 302142;302143;302144;302145;302146;302147;302148;302149;302150;302151;302152;302153;302154;302155;302156;302157;302158;302159;302160;302161;302162;302163 185202;185203;185204;185205;185206;185207;185208;185209;185210;185211;185212;185213;185214;185215;185216;185217 185206 15 PAIGVGAGNTPVVIDETADIK Unmodified 2036.079 0.078985188 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 1 2 2 2 2 2 2 2 2 2 41.706 40.008 2;3 8.7133E-63 19630 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 337.89 323.71 682090000 83573000 67234000 58274000 1609500 2010700 799270 96865000 94399000 84263000 0 0 0 39647000 32590000 30133000 0 0 0 31486000 30557000 28655000 0 0 0 16112 548 15604 302164;302165;302166;302167;302168;302169;302170;302171;302172;302173;302174;302175;302176;302177;302178;302179;302180;302181;302182;302183;302184;302185;302186;302187;302188;302189;302190;302191;302192;302193 185218;185219;185220;185221;185222;185223;185224;185225;185226;185227;185228;185229;185230;185231;185232;185233;185234 185226 17 PAIGVGAGNTPVVIDETADIKR Unmodified 2192.1801 0.18009622 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 1 1 1 35.28 33.64 2;3 4.1144E-63 16391 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 285.43 271.71 3547500000 343860000 321670000 279490000 10259000 9649300 9315800 499190000 520960000 473570000 10823000 10267000 9334400 184190000 169440000 173180000 0 0 0 162880000 152990000 170150000 14278000 10755000 11216000 16113 548 15605 302194;302195;302196;302197;302198;302199;302200;302201;302202;302203;302204;302205;302206;302207;302208;302209;302210;302211;302212;302213;302214;302215;302216;302217;302218;302219;302220;302221;302222;302223;302224 185235;185236;185237;185238;185239;185240;185241;185242;185243;185244;185245;185246;185247;185248;185249;185250;185251;185252;185253;185254;185255;185256;185257 185241 23 PAIIALQIVR Unmodified 1092.7019 0.70191449 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.056 41.394 2 8.0995E-09 20693 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 186.67 175.98 569950000 72669000 58947000 56170000 0 0 257660 78039000 65185000 54870000 1079300 0 0 29011000 24862000 25851000 0 0 0 34207000 35659000 33146000 0 0 0 16114 1507 15606 302225;302226;302227;302228;302229;302230;302231;302232;302233;302234;302235;302236;302237;302238 185258;185259;185260;185261;185262;185263;185264;185265;185266;185267;185268;185269 185258 12 PAISASESITR Unmodified 1130.5932 0.5931519 140 P06988 hisD Histidinol dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 18.01 18.736 2 0.00057273 6605 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 87.149 79.478 54607000 11653000 0 0 0 0 0 0 0 0 0 0 0 7293800 5062700 5548800 0 0 0 6787100 9686800 8574600 0 0 0 16115 140 15607 302239;302240;302241;302242;302243;302244;302245 185270;185271 185271 1 PALDLIR Unmodified 796.48069 0.48068833 1870 P76541 eutL Ethanolamine utilization protein EutL yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 31.586 30.107 2 0.0073714 13974 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 91.584 35.074 39689000 10303000 8323800 7426800 0 0 0 4746300 3696600 5192400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16116 1870 15608 302246;302247;302248;302249;302250;302251 185272;185273;185274 185274 3 PALFTHDEVITLFHEFGHGLHHMLTR Unmodified 3054.5287 0.52866493 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 1 2 2 2 2 50.411 48.979 5;6 1.5293E-15 23808 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 142.94 140.74 403770000 38615000 40984000 24138000 0 0 0 51478000 51130000 60618000 0 0 0 19126000 9969600 19896000 0 0 0 22613000 35276000 29922000 0 0 0 16117 1298 15609 302252;302253;302254;302255;302256;302257;302258;302259;302260;302261;302262;302263;302264;302265;302266;302267;302268;302269;302270;302271;302272;302273;302274 185275;185276;185277;185278;185279;185280;185281;185282 185278 7 PALNGYFR Unmodified 936.48175 0.48175096 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 26.673 25.659 2 2.5384E-05 11525 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 175.94 160.5 55583000 18323000 16119000 13186000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3119400 4836200 0 0 0 0 16118 1107 15610 302275;302276;302277;302278;302279 185283;185284 185283 2 PANQGSSVGVSK Unmodified 1129.5728 0.57275081 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 10.733 11.528 2 7.8099E-14 2804 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.97 145.74 109780000 0 11172000 0 0 0 0 18533000 18024000 17615000 0 0 0 21492000 0 0 0 0 0 22941000 0 0 0 0 0 16119 253 15611 302280;302281;302282;302283;302284;302285;302286;302287 185285;185286;185287;185288;185289;185290 185289 6 PANQLLTQPVK Unmodified 1207.6925 0.69247202 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.272 21.947 2 5.9361E-20 9397 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 240.13 219.99 2283900000 155740000 148720000 144480000 0 0 0 303870000 270070000 253310000 0 0 0 179720000 167580000 156810000 0 0 0 157620000 185110000 160910000 0 0 0 16120 56 15612 302288;302289;302290;302291;302292;302293;302294;302295;302296;302297;302298;302299 185291;185292;185293;185294;185295;185296;185297;185298;185299;185300;185301;185302 185293 12 PAPANTGVIYR Unmodified 1157.6193 0.61930707 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 18.683 19.21 2 0.0010308 7173 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.309 90.375 67097000 9681000 7607600 6026000 0 0 0 4941300 6876700 5698900 0 0 0 0 0 3350400 0 0 0 7199100 6886800 8829700 0 0 0 16121 303 15613 302300;302301;302302;302303;302304;302305;302306;302307;302308;302309 185303;185304;185305;185306;185307;185308;185309;185310 185308 0 PAPAPQADTPAAAPQGE Unmodified 1587.7529 0.75290002 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.017 22.004 2 1.6766E-10 9174 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 145.01 140.4 108710000 5914800 4355000 3707400 0 0 0 14652000 12415000 14663000 0 927330 0 6014500 10284000 7355600 0 0 0 11785000 8588700 8052600 0 0 0 16122 201 15614 302310;302311;302312;302313;302314;302315;302316;302317;302318;302319;302320;302321;302322 185311;185312;185313;185314;185315 185312 5 PAPFLIHQESNVIVR Unmodified 1718.9468 0.94678922 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 32.335 30.879 3 3.4614E-07 14444 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.35 102.03 246700000 2744200 0 47221000 2319700 2539800 0 21543000 23686000 0 0 2760500 0 29542000 18093000 19076000 0 0 0 43740000 0 33433000 0 0 0 16123 1183 15615 302323;302324;302325;302326;302327;302328;302329;302330;302331;302332;302333;302334;302335;302336;302337 185316;185317;185318;185319;185320;185321;185322;185323;185324;185325;185326 185322 11 PAPISDK Unmodified 726.3912 0.39120462 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 11.613 11.836 2 0.0059588 2498 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 97.473 97.473 82650000 0 0 0 0 0 0 0 0 0 23727000 20824000 20038000 0 0 0 0 0 0 0 0 0 5896400 5649200 6515700 16124 936 15616 302338;302339;302340;302341;302342;302343 185327;185328;185329;185330 185330 4 PAPISDKEVDAIMNR Unmodified 1654.8349 0.83485551 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 1 1 1 1 2 2 2 31.293 29.726 2;3 1.1549E-08 11654 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 181.66 172.33 875770000 3060600 0 0 0 0 0 0 0 0 232090000 204970000 206280000 4258900 0 2595600 10148000 11905000 14042000 0 0 3008300 56648000 57309000 69464000 16125 936 15617 302344;302345;302346;302347;302348;302349;302350;302351;302352;302353;302354;302355;302356;302357;302358;302359;302360;302361;302362 185331;185332;185333;185334;185335;185336;185337;185338;185339;185340;185341;185342;185343;185344 185335 12 PAPISDKEVDAIMNR Oxidation (M) 1670.8298 0.82977013 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 1 1 By MS/MS By matching By matching By matching 1 1 1 1 22.59 21.781 3 0.0043845 7598 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 58.079 49.902 11508000 0 0 0 0 0 0 0 0 0 5891900 0 0 0 0 0 0 0 0 0 0 0 2525800 1356700 1733400 16126 936 15617 302363;302364;302365;302366 185345 185345 424 1 PAPITVEWAK Unmodified 1110.6073 0.6073454 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 33.146 31.599 2 0.00042581 15383 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.87 87.096 961360000 0 0 0 0 0 0 295160000 279360000 288770000 0 0 0 14455000 13499000 0 0 0 0 23710000 20437000 25973000 0 0 0 16127 1265 15618 302367;302368;302369;302370;302371;302372;302373;302374 185346;185347;185348;185349;185350;185351;185352 185346 5 PAPMSEAEFR Unmodified 1133.5175 0.51754412 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.411 21.918 2 5.2218E-05 8770 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 135 135 2600500000 485350000 462140000 416390000 646260 941510 681440 260700000 279650000 249770000 0 0 0 68859000 56782000 56935000 0 0 0 88382000 90916000 81040000 0 1316200 0 16128 401 15619 302375;302376;302377;302378;302379;302380;302381;302382;302383;302384;302385;302386;302387;302388;302389;302390 185353;185354;185355;185356;185357;185358;185359;185360;185361;185362;185363;185364 185364 12 PAPMSEAEFR Oxidation (M) 1149.5125 0.51245874 401 P0A867 talA Transaldolase A yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 15.987 16.646 2 0.017119 5722 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 58.433 49.521 24931000 6671000 0 2997900 0 0 0 3155700 5200500 5912000 0 0 0 0 0 0 0 0 0 0 0 993660 0 0 0 16129 401 15619 302391;302392;302393;302394;302395;302396;302397;302398;302399;302400;302401 185365;185366;185367;185368;185369 185365 193 4 PAPTPQAPAQNTTPVTK Unmodified 1717.8999 0.89989861 1149 P18196 minC Septum site-determining protein MinC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 16.881 17.639 2;3 8.8243E-15 6346 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 208.68 208.68 356850000 40752000 35487000 19864000 0 0 0 26261000 26889000 25553000 0 0 0 22061000 21965000 22135000 0 0 0 43546000 34387000 37945000 0 0 0 16130 1149 15620 302402;302403;302404;302405;302406;302407;302408;302409;302410;302411;302412;302413;302414;302415;302416;302417;302418;302419;302420;302421;302422;302423;302424 185370;185371;185372;185373;185374;185375;185376;185377;185378;185379;185380;185381;185382;185383;185384;185385 185374 16 PASASPAVGYMSVHQK Unmodified 1628.7981 0.79807608 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 2 3 3 2 18.072 18.664 2;3 2.8942E-18 6636 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 211.26 209.26 1556100000 141170000 131940000 116270000 0 0 0 73579000 100530000 80051000 0 0 0 100730000 99884000 83767000 0 0 0 205450000 198740000 224030000 0 0 0 16131 937 15621 302425;302426;302427;302428;302429;302430;302431;302432;302433;302434;302435;302436;302437;302438;302439;302440;302441;302442;302443;302444;302445;302446;302447;302448;302449;302450;302451 185386;185387;185388;185389;185390;185391;185392;185393;185394;185395;185396;185397;185398;185399;185400;185401;185402;185403;185404;185405;185406;185407;185408;185409 185406 23 PASGSPYWLK Unmodified 1104.5604 0.56039521 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.393 26.246 2 0.00014602 11967 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.24 111.09 397070000 37799000 36642000 37603000 0 0 0 29139000 28854000 28626000 0 0 0 23136000 28021000 27920000 0 0 0 37915000 41960000 39459000 0 0 0 16132 1794 15622 302452;302453;302454;302455;302456;302457;302458;302459;302460;302461;302462;302463 185410;185411;185412;185413;185414;185415;185416;185417;185418 185411 7 PASRPVTK Unmodified 854.4974 0.49740102 434 P0A8I5 trmB tRNA (guanine-N(7)-)-methyltransferase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 4.7073 5.5978 2 0.11556 1011 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 67.464 49.085 53989000 0 0 0 0 0 0 0 0 8078300 0 0 0 6026400 6563200 3702400 0 0 0 9102300 8309100 12207000 0 0 0 16133 434 15623 302464;302465;302466;302467;302468;302469;302470 185419 185419 0 PATFYQMQDNGKPVEGHASQMHYELAK Unmodified 3076.4171 0.41712515 811 P0ADV1 lptA Lipopolysaccharide export system protein LptA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.802 23.805 5 2.84E-05 10468 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 67.655 64.828 278350000 35235000 27769000 23176000 0 0 0 21329000 21569000 24115000 0 0 0 20078000 16978000 16086000 0 0 0 26668000 20405000 24943000 0 0 0 16134 811 15624 302471;302472;302473;302474;302475;302476;302477;302478;302479;302480;302481;302482 185420;185421;185422;185423;185424 185421 5 PATLSTGAVVK Unmodified 1042.6023 0.60226003 265 P0A6N4 efp Elongation factor P yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 2 2 2 1 1 2 17.752 18.422 2 1.206E-08 7003 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 179.51 106.26 5219900000 351620000 334510000 297630000 528500 0 372820 520560000 488870000 440420000 0 0 0 446030000 398520000 395590000 0 0 0 539850000 504850000 500510000 0 0 0 16135 265 15625 302483;302484;302485;302486;302487;302488;302489;302490;302491;302492;302493;302494;302495;302496;302497;302498;302499;302500;302501 185425;185426;185427;185428;185429;185430;185431;185432;185433;185434;185435;185436;185437;185438;185439 185426 15 PATTTTVTR Unmodified 946.50836 0.50835964 805 P0ADT2 ygiB UPF0441 protein YgiB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.003 11.709 2 4.2164E-05 2415 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 151.04 112.66 715770000 38042000 33663000 35788000 1509000 1870400 1004100 91535000 93006000 78544000 15103000 17077000 13905000 37667000 41162000 41732000 0 0 0 64832000 48229000 53573000 0 2829700 4698600 16136 805 15626 302502;302503;302504;302505;302506;302507;302508;302509;302510;302511;302512;302513;302514;302515;302516;302517;302518;302519;302520;302521 185440;185441;185442;185443;185444;185445;185446 185442 7 PAVEAGEK Unmodified 799.40758 0.40758296 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 10.398 11.125 2 0.01206 2532 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 75.738 58.044 308570000 59779000 56292000 55120000 0 0 0 48816000 48887000 39673000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16137 530 15627 302522;302523;302524;302525;302526;302527;302528 185447;185448;185449;185450 185448 4 PAVEAVENGDIQFVPK Unmodified 1711.8781 0.87810054 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.721 36.047 2 3.2672E-12 17753 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.13 126.23 122920000 10831000 10415000 9268200 0 0 0 9890500 7992400 10171000 0 0 0 10088000 8705200 8995600 0 0 0 14167000 12143000 10248000 0 0 0 16138 158 15628 302529;302530;302531;302532;302533;302534;302535;302536;302537;302538;302539;302540 185451;185452;185453;185454;185455;185456;185457;185458;185459;185460 185451 7 PAVNPGISVSR Unmodified 1095.6037 0.60365701 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 20.244 20.47 2 2.4285E-05 7555 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 147.4 136.71 4434000000 167010000 139890000 139510000 2025100 1578500 1819000 426740000 432400000 419720000 10118000 6888100 8103700 505110000 407660000 394110000 0 0 0 456330000 405580000 490210000 7118300 6416300 5624700 16139 645 15629 302541;302542;302543;302544;302545;302546;302547;302548;302549;302550;302551;302552;302553;302554;302555;302556;302557;302558;302559;302560;302561;302562 185461;185462;185463;185464;185465;185466;185467;185468;185469;185470;185471;185472;185473;185474;185475;185476;185477;185478;185479;185480 185480 20 PAVVESVAR Unmodified 926.51853 0.5185304 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.008 15.798 2 9.1763E-05 5286 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.26 87.296 392080000 16187000 17072000 17338000 0 0 0 36046000 36782000 30066000 0 0 0 39545000 35448000 32642000 0 0 0 44372000 43293000 43286000 0 0 0 16140 1509 15630 302563;302564;302565;302566;302567;302568;302569;302570;302571;302572;302573;302574 185481;185482;185483;185484;185485;185486;185487;185488;185489;185490;185491;185492 185485 12 PAVVIPTNEELVIAQDASR Unmodified 2021.0793 0.079319539 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 45.248 43.808 2;3 4.4407E-29 20362 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 203.82 198.52 294090000 11417000 9104200 11981000 0 0 0 29700000 23743000 25119000 0 0 0 36264000 34829000 30826000 0 0 0 23708000 29867000 27538000 0 0 0 16141 224 15631 302575;302576;302577;302578;302579;302580;302581;302582;302583;302584;302585;302586;302587;302588;302589;302590;302591;302592;302593;302594;302595 185493;185494;185495;185496;185497;185498;185499;185500;185501;185502 185502 10 PAWDGYLR Unmodified 976.47667 0.47666558 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 33.101 31.799 2 0.00083171 15025 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.29 108.3 453950000 133210000 123660000 100320000 0 0 0 0 0 0 0 0 0 12026000 12883000 10148000 0 0 0 22509000 19951000 19244000 0 0 0 16142 1376 15632 302596;302597;302598;302599;302600;302601;302602;302603;302604 185503;185504;185505;185506;185507 185503 5 PAYDALQGQVK Unmodified 1188.6139 0.61388734 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 22.35 22.034 2 0.043199 9212 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.04 48.78 29599000 0 0 0 0 0 0 9571000 11029000 8998300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16143 1265 15633 302605;302606;302607 185508;185509;185510 185510 0 PCDQVESAVAWK Unmodified 1388.6395 0.63945017 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.158 26.011 2 2.2925E-17 11269 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 221.32 214.42 382150000 19291000 20306000 16503000 0 0 0 39121000 41384000 47095000 0 0 0 31926000 33610000 33242000 0 0 0 31018000 34233000 34417000 0 0 0 16144 1299 15634 302608;302609;302610;302611;302612;302613;302614;302615;302616;302617;302618;302619 185511;185512;185513;185514;185515;185516;185517;185518;185519;185520;185521;185522 185522 12 PCSEEGTK Unmodified 906.3753 0.37529656 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 4.6835 5.5711 2 0.035307 1320 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 62.88 50.327 63141000 0 0 17771000 0 0 0 2824900 3487700 4120200 0 0 0 4544300 6413100 4666100 0 0 0 10002000 9312100 0 0 0 0 16145 179 15635 302620;302621;302622;302623;302624;302625;302626;302627;302628 185523;185524 185524 2 PCSEEGTKR Unmodified 1062.4764 0.47640759 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 4.9052 5.7393 3 4.1859E-05 1270 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.57 132.99 124670000 22681000 22119000 16160000 0 0 0 6644100 8776500 7436500 0 0 0 5513600 6249300 0 0 0 0 10188000 9690400 9212500 0 0 0 16146 179 15636 302629;302630;302631;302632;302633;302634;302635;302636;302637;302638;302639 185525;185526;185527;185528 185528 4 PDEGIPAVCFK Unmodified 1231.5907 0.59070906 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 33.94 32.422 2 5.1922E-06 15622 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 152.34 144.4 242500000 24631000 19107000 24030000 0 0 0 62086000 54432000 56619000 0 0 0 0 0 0 0 0 0 0 0 1590400 0 0 0 16147 1755;1756 15637 302640;302641;302642;302643;302644;302645;302646 185529;185530;185531;185532;185533;185534 185531 6 PDFVALK Unmodified 788.44324 0.44324019 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.697 25.528 2 0.0018451 11579 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 122.79 78.179 879230000 2599100 0 2484800 0 0 0 91098000 82219000 90601000 0 0 0 84722000 77560000 81839000 0 0 0 122250000 119360000 123720000 0 0 780450 16148 1324 15638 302647;302648;302649;302650;302651;302652;302653;302654;302655;302656;302657;302658 185535;185536;185537;185538;185539;185540;185541 185539 7 PDGSIIETPITANFR Unmodified 1629.8362 0.83623572 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 1 1 2 2 2 2 1 1 2 2 2 2 44.481 43.078 2;3 2.4996E-36 16952 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 268.98 262.32 1444700000 74356000 77296000 66299000 0 0 0 0 46080000 1522600 71498000 58866000 64934000 47018000 43338000 48420000 181510000 135670000 131180000 58739000 65182000 63881000 65136000 62756000 81055000 16149 458 15639 302659;302660;302661;302662;302663;302664;302665;302666;302667;302668;302669;302670;302671;302672;302673;302674;302675;302676;302677;302678;302679;302680;302681;302682;302683;302684;302685;302686;302687;302688;302689;302690;302691 185542;185543;185544;185545;185546;185547;185548;185549;185550;185551;185552;185553 185549 12 PDIPLHALAMLK Unmodified 1317.7479 0.74787841 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 42.082 40.429 3 2.0433E-06 19689 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.13 128.65 124490000 14776000 20787000 17697000 0 0 0 0 9027400 5256200 0 0 0 7282200 7329100 4963400 0 0 0 10876000 12727000 13768000 0 0 0 16150 1444 15640 302692;302693;302694;302695;302696;302697;302698;302699;302700;302701;302702 185554;185555;185556;185557;185558;185559 185558 6 PDTHGYSTSRGIPRLR Unmodified 1811.9391 0.93907808 1905 P77434 alaC Glutamate-pyruvate aminotransferase AlaC yes yes 0 0 2 By matching By MS/MS 1 1 11.634 12.49 5 0.1495 3066 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 18.138 13.59 7673800 0 2996400 0 0 0 0 0 0 0 0 0 0 0 0 4677400 0 0 0 0 0 0 0 0 0 16151 1905 15641 302703;302704 185560 185560 0 PEATPFQVMIVDDHPLMR Unmodified 2095.0231 0.023066988 1380 P31802 narP Nitrate/nitrite response regulator protein NarP yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 45.047 45.169 3 8.7807E-14 17120 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 110.37 105.46 24042000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10654000 6417200 6970700 0 0 0 0 0 0 16152 1380 15642 302705;302706;302707 185561 185561 1 PEEIEALMVAARK Unmodified 1455.7755 0.77554972 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 16.668 17.421 3 0.15768 6275 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 12.42 6.7002 1074600000 239950000 332200000 211590000 0 0 0 0 0 0 0 0 0 0 0 290870000 0 0 0 0 0 0 0 0 0 16153 1100 15643 302708;302709;302710;302711 185562;185563;185564 185562 3 PEFIKPEDVSAEVVEK Unmodified 1814.9302 0.93019569 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.801 31.369 3 7.0695E-14 14845 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 162.41 151.75 321920000 23276000 15805000 24016000 0 0 0 26465000 21359000 24340000 0 0 0 24993000 26873000 24822000 0 0 0 37338000 31281000 41354000 0 0 0 16154 267 15644 302712;302713;302714;302715;302716;302717;302718;302719;302720;302721;302722;302723 185565;185566;185567;185568;185569;185570;185571;185572;185573 185566 9 PELPEVETSR Unmodified 1155.5772 0.57716749 112 P05523 mutM Formamidopyrimidine-DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS 1 1 22.916 22.617 2 0.0063449 6870 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 72.643 69.072 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16155 112 15645 302724;302725 185574;185575 185574 2 PEMAEHLAAVK Unmodified 1194.6067 0.60669348 336 P0A7E3 pyrE Orotate phosphoribosyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 32.966 31.537 3 0.17058 14484 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 11.533 1.5281 37235000 0 0 0 0 129590 0 0 0 8066900 0 0 0 7053500 4190700 5018400 0 0 0 6235300 6541000 0 0 0 0 16156 336 15646 302726;302727;302728;302729;302730;302731;302732 185576 185576 1 PENAAEWHQK Unmodified 1208.5574 0.5574351 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 11.255 12.107 2;3 1.749E-05 3173 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.66 145.32 1228600000 12023000 4102600 6043900 0 0 0 86335000 89531000 78633000 0 0 0 129510000 132730000 129190000 0 0 0 188180000 181750000 190580000 0 0 0 16157 993 15647 302733;302734;302735;302736;302737;302738;302739;302740;302741;302742;302743;302744;302745;302746;302747;302748;302749;302750;302751;302752;302753 185577;185578;185579;185580;185581;185582;185583;185584;185585;185586;185587 185578 11 PEQVDAAVR Unmodified 983.50361 0.50360861 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.76 13.614 2 0.0070913 4092 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.906 75.052 67979000 4102900 0 5408000 0 0 0 6526300 6438600 7171700 0 0 0 3909300 5471500 7379100 0 0 0 5350600 6998100 9222900 0 0 0 16158 1586 15648 302754;302755;302756;302757;302758;302759;302760;302761;302762;302763;302764 185588;185589;185590;185591;185592;185593;185594;185595 185591 0 PESWVEDIATAK Unmodified 1344.6561 0.65614609 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS 1 22.558 22.208 3 0.16849 9112 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 7.0192 0 6978500 0 0 0 0 0 0 0 0 0 0 0 0 6978500 0 0 0 0 0 0 0 0 0 0 0 16159 1091 15649 302765 185596 185596 1 PETINYR Unmodified 891.44503 0.4450311 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 2 2 2 2 15.245 15.358 2 0.064661 4112 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 60.358 7.6751 18742000 0 1027200 0 0 0 0 0 0 0 905460 0 0 0 0 0 4827600 5205600 4951800 0 0 0 0 0 1824300 16160 458 15650 302766;302767;302768;302769;302770;302771;302772;302773;302774;302775 185597;185598;185599 185599 3 PFDMPMADFR Unmodified 1225.526 0.52600031 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.432 42.917 2 0.00062183 20881 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.98 96.019 99785000 17676000 16129000 12890000 0 0 0 10380000 11773000 11961000 0 0 0 3814000 2172500 2697300 0 0 0 3797600 4496200 1998700 0 0 0 16161 886 15651 302776;302777;302778;302779;302780;302781;302782;302783;302784;302785;302786;302787 185600;185601;185602;185603;185604;185605;185606 185605 2 PFEAVWWLQK Unmodified 1302.6761 0.67609367 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 2 1 51.38 50.134 2 1.3216E-06 24346 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 190.51 184.95 639190000 0 0 0 0 0 0 65008000 66577000 52217000 0 0 0 69915000 72681000 64706000 0 0 0 89075000 79680000 79335000 0 0 0 16162 1324 15652 302788;302789;302790;302791;302792;302793;302794;302795;302796;302797;302798 185607;185608;185609;185610;185611;185612;185613;185614 185610 6 PFFGVQPALVDNEGNPLEGATEGSLVITDSWPGQAR Unmodified 3767.8431 0.8431186 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By matching By MS/MS 2 1 2 55.19 53.784 3;4 7.3982E-29 26436 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.25 154.98 227910000 95190000 39061000 93659000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16163 1305 15653 302799;302800;302801;302802;302803 185615;185616 185616 2 PFILDYLHK Unmodified 1144.6281 0.62808085 1136 P17117 nfsA Oxygen-insensitive NADPH nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.528 38.862 3 9.0541E-05 19488 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 112.84 105.71 256410000 30004000 31058000 21427000 0 0 0 18921000 21448000 13981000 0 0 0 20213000 16932000 14784000 0 0 0 19915000 24744000 22987000 0 0 0 16164 1136 15654 302804;302805;302806;302807;302808;302809;302810;302811;302812;302813;302814;302815 185617;185618;185619;185620;185621;185622;185623;185624;185625;185626;185627;185628 185617 12 PFIPVLR Unmodified 840.52216 0.52215921 1834 P76216 astB N-succinylarginine dihydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 37.691 36.252 2 0.0011046 17433 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.44 130.05 46888000 15592000 15965000 15331000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16165 1834 15655 302816;302817;302818 185629;185630;185631 185631 3 PFITHHNALDLDMYLR Unmodified 1954.9724 0.97235205 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 5 4 6 5 1 1 4 3 3 5 3 3 39.149 37.409 2;3;4 3.0062E-61 18244 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 338.79 330.28 5910100000 433560000 329510000 361420000 0 0 0 773900000 720780000 712000000 0 1302000 1302000 369250000 387770000 364120000 0 0 0 541000000 448040000 466140000 0 0 0 16166 448;449 15656 302819;302820;302821;302822;302823;302824;302825;302826;302827;302828;302829;302830;302831;302832;302833;302834;302835;302836;302837;302838;302839;302840;302841;302842;302843;302844;302845;302846;302847;302848;302849;302850;302851;302852;302853;302854;302855;302856;302857;302858;302859;302860;302861;302862;302863;302864;302865;302866;302867;302868;302869 185632;185633;185634;185635;185636;185637;185638;185639;185640;185641;185642;185643;185644;185645;185646;185647;185648;185649;185650;185651;185652;185653;185654;185655;185656;185657;185658;185659;185660;185661;185662 185644 26 PFITHHNALDLDMYLR Oxidation (M) 1970.9673 0.96726667 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 36.747 35.066 3 0.000126 17247 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.583 69.09 74950000 5877700 0 0 0 0 0 7580700 13275000 15417000 0 0 0 4373900 3815900 6174100 0 0 0 7839200 5320200 5276900 0 0 0 16167 448;449 15656 302870;302871;302872;302873;302874;302875;302876;302877;302878;302879;302880 185663;185664;185665 185665 218 3 PFKPLVTAGIESLLNTFLYR Unmodified 2278.2725 0.27254004 797 P0ADP7 ubiJ Ubiquinone biosynthesis protein UbiJ yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.609 54.177 3 3.4652E-10 22106 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 117.65 117.65 181090000 11065000 11343000 10822000 8117400 9214300 7759500 10800000 0 13985000 20128000 17097000 17499000 0 5847100 0 0 0 0 10036000 12934000 0 0 7976200 6467100 16168 797 15657 302881;302882;302883;302884;302885;302886;302887;302888;302889;302890;302891;302892;302893;302894;302895;302896 185666;185667 185666 2 PFLADAELLSK Unmodified 1202.6547 0.65468953 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 41.767 40.044 2 0.00015288 19493 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.53 99.171 116840000 31791000 27358000 27639000 0 0 0 5490500 6540100 4197700 0 0 0 2444300 3751300 2929700 0 0 0 4695200 0 0 0 0 0 16169 1554 15658 302897;302898;302899;302900;302901;302902;302903;302904;302905;302906 185668;185669;185670 185669 3 PFLLPIEDVFSISGR Unmodified 1688.9138 0.91375776 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.705 54.232 2 2.1131E-11 26624 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 191.53 187.44 878570000 70054000 66322000 69367000 0 0 0 55948000 56767000 59914000 0 0 0 80404000 87946000 70344000 0 0 0 82227000 86635000 92641000 0 0 0 16170 1048 15659 302907;302908;302909;302910;302911;302912;302913;302914;302915;302916;302917;302918 185671;185672;185673;185674;185675;185676;185677;185678;185679;185680;185681 185675 11 PFNFEGK Unmodified 837.4021 0.40210366 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 2 2 2 2 2 2 21.58 21.759 2 0.004947 9338 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.69 74.57 113680000 0 0 0 0 0 0 9025600 7491000 7174700 0 0 0 16914000 13036000 12722000 0 0 0 13812000 17715000 15789000 0 0 0 16171 502 15660 302919;302920;302921;302922;302923;302924;302925;302926;302927;302928;302929;302930;302931;302932;302933 185682;185683;185684;185685;185686 185682 5 PFTAATLEEK Unmodified 1105.5655 0.56554017 837 P0AE67 cheY Chemotaxis protein CheY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 23.514 23.01 2 2.2238E-05 9897 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.52 122.96 65157000 25028000 21599000 18529000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16172 837 15661 302934;302935;302936 185687;185688;185689 185688 3 PFTLGQR Unmodified 817.44464 0.44463717 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 4 2 1 1 1 4 2 1 1 1 1 2 1 2 20.705 20.723 2 0.00019738 6011 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 166.13 143.5 13562000000 56571000 1442900 51507000 1664100 1584300 1243800 0 0 0 1647100000 1422200000 1407400000 63270000 56070000 45720000 2184600000 1669000000 1716200000 74476000 75182000 85253000 1026500000 1059600000 915170000 16173 1616 15662 302937;302938;302939;302940;302941;302942;302943;302944;302945;302946;302947;302948;302949;302950;302951;302952;302953;302954;302955;302956;302957;302958;302959;302960;302961;302962;302963;302964;302965;302966;302967;302968;302969 185690;185691;185692;185693;185694;185695;185696;185697;185698;185699;185700;185701;185702;185703;185704;185705;185706;185707;185708;185709;185710;185711;185712;185713;185714;185715;185716;185717;185718;185719;185720 185690 30 PFTPTLAQAK Unmodified 1072.5917 0.59169534 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 24.186 23.197 2 0.0035365 9785 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 82.563 73.216 83910000 0 7673500 0 0 0 0 17141000 13191000 13806000 0 0 0 8884300 0 0 0 0 0 8194000 7840100 7180600 0 0 0 16174 1588 15663 302970;302971;302972;302973;302974;302975;302976;302977 185721;185722;185723;185724;185725;185726 185726 6 PFVLGPTHEEVITDLIR Unmodified 1935.0466 0.046562847 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.73 46.316 3 4.3419E-09 21541 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 124.43 122.52 532810000 41955000 42771000 43520000 0 0 0 46933000 46243000 47266000 0 0 0 43487000 45906000 35132000 0 0 0 47330000 41909000 50356000 0 0 0 16175 1120 15664 302978;302979;302980;302981;302982;302983;302984;302985;302986;302987;302988;302989 185727;185728;185729;185730;185731;185732;185733;185734;185735;185736;185737;185738 185738 12 PFWHILSFFHR Unmodified 1485.767 0.76697436 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 47.479 45.862 4 0.0030885 22255 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 64.82 59.336 38166000 0 1751200 0 0 0 0 4480200 0 0 3416000 3115900 3385800 0 0 1969500 0 0 0 6408800 4983400 5815800 1470100 1369100 0 16176 1492 15665 302990;302991;302992;302993;302994;302995;302996;302997;302998;302999;303000 185739;185740 185739 2 PFYQVVVADSR Unmodified 1279.6561 0.65608651 369 P0A7T3 rpsP 30S ribosomal protein S16 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.559 32.119 2 1.591E-05 15103 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.34 114.48 78689000 12160000 11102000 10999000 0 0 0 2690700 3453100 2650500 0 0 0 5120900 5620600 5507800 0 0 0 6066400 5712000 7606200 0 0 0 16177 369 15666 303001;303002;303003;303004;303005;303006;303007;303008;303009;303010;303011;303012 185741;185742;185743;185744;185745;185746;185747 185746 5 PGADYNWSLK Unmodified 1149.5455 0.54547343 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.635 28.351 2 0.00016577 12559 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 140.16 128.12 164040000 11394000 16794000 11212000 0 0 0 12719000 10529000 10816000 0 0 0 12700000 12556000 15490000 0 0 0 14669000 17710000 17447000 0 0 0 16178 1628 15667 303013;303014;303015;303016;303017;303018;303019;303020;303021;303022;303023;303024 185748;185749;185750;185751;185752;185753;185754;185755;185756;185757 185757 8 PGAEQSVHNDWK Unmodified 1366.6266 0.6265773 911 P0AF50 yjbR Uncharacterized protein YjbR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 3 3 2 2 2 2 2 2 2 2 12.285 13.109 2;3 1.1464E-74 3835 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 356.9 351.42 1059900000 160310000 169200000 160270000 0 0 0 127230000 136290000 138280000 0 0 0 25831000 26526000 24690000 0 0 0 30633000 33401000 27220000 0 0 0 16179 911 15668 303025;303026;303027;303028;303029;303030;303031;303032;303033;303034;303035;303036;303037;303038;303039;303040;303041;303042;303043;303044;303045;303046;303047;303048;303049;303050 185758;185759;185760;185761;185762;185763;185764;185765;185766;185767;185768;185769;185770;185771;185772;185773 185766 16 PGALLEQLLK Unmodified 1080.6543 0.6542956 1952 Q46803 ygeW Uncharacterized protein YgeW yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 46.502 44.65 2 0.00058265 22041 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.649 90.24 11735000 0 0 0 0 0 0 3492500 4834700 3407600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16180 1952 15669 303051;303052;303053 185774 185774 1 PGDGVIHSWLNR Unmodified 1349.684 0.6840326 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 1 1 1 29.488 28.265 2;3 2.8875E-12 13030 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 159.94 159.94 391900000 48306000 43044000 46295000 0 0 0 20240000 20468000 17794000 0 0 0 22936000 32692000 27575000 0 0 0 38613000 36830000 37109000 0 0 0 16181 1444 15670 303054;303055;303056;303057;303058;303059;303060;303061;303062;303063;303064;303065;303066;303067 185775;185776;185777;185778;185779;185780;185781;185782;185783;185784;185785;185786;185787 185780 12 PGEAIEHPWVTK Unmodified 1362.6932 0.6932003 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 21.1 21.091 2;3 3.0439E-05 8411 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.83 104.31 42041000 0 0 0 0 0 0 0 0 0 3335300 3582300 0 0 0 7207500 0 0 0 9491600 11391000 0 0 3098700 3935100 16182 1057 15671 303068;303069;303070;303071;303072;303073;303074 185788;185789;185790;185791 185790 4 PGEFSER Unmodified 820.37153 0.37153181 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 12.066 12.897 2 0.08045 3696 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 57.471 34.849 33951000 0 0 0 0 0 0 6502700 6761600 0 0 0 0 0 0 6810900 0 0 0 13876000 0 0 0 0 0 16183 1256 15672 303075;303076;303077;303078 185792 185792 1 PGENILLFK Unmodified 1029.5859 0.58588168 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.202 36.505 2 0.00068817 17596 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.8 71.449 107370000 30601000 25584000 26451000 0 210430 0 0 3588300 0 0 0 540310 2711700 0 4099300 0 0 0 6471900 5717700 1129000 0 262180 0 16184 1264 15673 303079;303080;303081;303082;303083;303084;303085;303086;303087;303088;303089;303090 185793 185793 1 PGEPPTR Unmodified 752.3817 0.38170256 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 10.434 11.001 2 0.0042857 2455 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 104.45 92.063 527830000 28858000 21478000 19186000 0 0 0 17860000 15978000 20196000 0 13063000 13531000 31026000 27831000 26969000 53997000 53172000 67831000 29178000 31699000 28249000 0 25688000 2040800 16185 463 15674 303091;303092;303093;303094;303095;303096;303097;303098;303099;303100;303101;303102;303103;303104;303105;303106;303107;303108;303109;303110 185794;185795;185796;185797;185798;185799;185800;185801;185802 185800 4 PGEVHGEHYFFVNHDEFK Unmodified 2186.981 0.98100248 1622 P60546 gmk Guanylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.758 22.928 4 3.1645E-05 9928 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 82.865 79.578 492160000 38919000 35950000 28936000 0 0 0 46130000 40892000 48451000 0 0 0 35367000 43775000 38323000 0 0 0 40057000 41733000 53624000 0 0 0 16186 1622 15675 303111;303112;303113;303114;303115;303116;303117;303118;303119;303120;303121;303122 185803;185804;185805;185806;185807;185808;185809;185810;185811;185812;185813;185814 185809 12 PGFIPGDWIK Unmodified 1128.5968 0.59678072 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 46.812 45.413 2 0.00025317 21317 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 116.37 100.74 737620000 96501000 86430000 87949000 2797200 0 0 57961000 62782000 53903000 0 0 0 41203000 43625000 36153000 0 0 0 61588000 64218000 42511000 0 0 0 16187 1237 15676 303123;303124;303125;303126;303127;303128;303129;303130;303131;303132;303133;303134;303135 185815;185816;185817;185818;185819;185820;185821;185822;185823;185824;185825;185826 185824 12 PGGDVFFSTLNR Unmodified 1308.6463 0.64625011 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 39.722 38.008 2 0.0013554 18812 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 66.92 58.388 34885000 7284200 8934300 5342400 0 0 0 0 6000200 7324200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16188 1146 15677 303136;303137;303138;303139;303140 185827 185827 0 PGIAAPIIGTSR Unmodified 1151.6663 0.66625727 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.426 30.07 2 3.3294E-05 14343 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 112.71 95.471 572160000 101430000 115050000 86996000 0 0 0 53339000 48148000 49040000 0 0 0 17142000 15999000 15515000 0 0 0 25471000 25306000 18721000 0 0 0 16189 1934 15678 303141;303142;303143;303144;303145;303146;303147;303148;303149;303150;303151;303152 185828;185829;185830;185831;185832;185833;185834;185835;185836;185837;185838;185839 185830 7 PGIILYGASPSGQWR Unmodified 1600.8362 0.83617614 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 41.308 39.697 2 1.7504E-11 19176 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.97 159.4 57117000 12901000 14231000 12512000 0 0 0 1817500 0 0 0 0 0 0 1202200 0 0 0 0 5239400 5614000 3600400 0 0 0 16190 1326 15679 303153;303154;303155;303156;303157;303158;303159;303160 185840;185841 185841 2 PGLMNVDFADVR Unmodified 1332.6496 0.64962092 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.779 42.264 2 9.2634E-12 20582 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 208.6 188.61 828370000 83692000 83065000 75594000 0 0 0 75501000 60869000 68922000 0 0 0 52867000 52212000 53691000 0 0 0 76671000 75503000 69781000 0 0 0 16191 502 15680 303161;303162;303163;303164;303165;303166;303167;303168;303169;303170;303171;303172 185842;185843;185844;185845;185846;185847;185848;185849;185850;185851;185852;185853 185846 12 PGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLK Unmodified 3235.5568 0.55678976 1174 P21179 katE Catalase HPII yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 27.313 26.15 4 2.9092E-07 11756 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.881 71.662 104710000 28553000 26949000 27473000 0 0 0 7566700 0 8803600 0 0 0 0 0 0 0 0 0 0 0 5362500 0 0 0 16192 1174 15681 303173;303174;303175;303176;303177;303178 185854;185855 185855 2 PGNINAWDNEDFVK Unmodified 1617.7423 0.74233534 1179 P21367 ycaC Uncharacterized protein YcaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.801 35.007 2 1.8884E-19 16665 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 242.82 237.28 3031300000 752700000 671880000 650970000 0 610760 782850 172740000 190240000 166260000 7702100 5310000 5974800 50632000 57791000 49833000 0 0 0 81724000 79091000 82493000 1776500 1566100 1239600 16193 1179 15682 303179;303180;303181;303182;303183;303184;303185;303186;303187;303188;303189;303190;303191;303192;303193;303194;303195;303196;303197;303198 185856;185857;185858;185859;185860;185861;185862;185863;185864;185865;185866 185864 11 PGNVVLTPTILR Unmodified 1278.766 0.76597131 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.588 36.914 2 4.6309E-07 17841 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 154.85 143.69 1178400000 99940000 79895000 81519000 0 0 0 138170000 128540000 121590000 0 0 0 79385000 77886000 70457000 0 0 0 113580000 97199000 90199000 0 0 0 16194 634 15683 303199;303200;303201;303202;303203;303204;303205;303206;303207;303208;303209;303210 185867;185868;185869;185870;185871;185872;185873;185874;185875;185876;185877;185878 185874 12 PGPVWIDIPK Unmodified 1120.6281 0.62808085 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 42.635 40.914 2 4.5617E-05 19902 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.91 153.98 181450000 41124000 37011000 31040000 0 0 0 8260200 7448200 6736400 0 0 0 8173100 0 8183700 0 0 0 13051000 10381000 10046000 0 0 0 16195 173 15684 303211;303212;303213;303214;303215;303216;303217;303218;303219;303220;303221 185879;185880;185881;185882;185883;185884;185885;185886;185887 185884 9 PGQDFFPLTVNYQER Unmodified 1809.8686 0.86859848 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.828 45.439 2 4.2984E-06 22624 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.21 131.58 93998000 6217500 4767800 4371900 0 0 0 7356300 8211900 6844200 0 0 0 7923500 8626400 8160800 0 0 0 10551000 10156000 10810000 0 0 0 16196 107 15685 303222;303223;303224;303225;303226;303227;303228;303229;303230;303231;303232;303233 185888;185889 185888 2 PGQSIQTGEPEYVIPDVLVR Unmodified 2196.1426 0.14264808 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 49.215 48.215 2;3 6.0745E-30 18386 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 262.23 235.26 125570000 19528000 17787000 17384000 0 0 0 0 0 6174400 0 0 0 6357200 6842300 5614300 12009000 6468100 6327800 9786100 11287000 0 0 0 0 16197 1249 15686 303234;303235;303236;303237;303238;303239;303240;303241;303242;303243;303244;303245;303246 185890;185891;185892;185893;185894;185895;185896;185897 185890 8 PGRFELKPTLEK Unmodified 1413.798 0.79799972 1522 P39310 ytfB Uncharacterized protein YtfB yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 19.003 19.008 4 0.14869 6120 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 23.092 15.727 25664000 0 0 0 0 0 3731400 0 0 0 5049500 5302700 4342700 0 0 0 0 0 0 0 0 0 1940500 2781400 2515800 16198 1522 15687 303247;303248;303249;303250;303251;303252;303253 185898 185898 1 PGSLGHR Unmodified 722.38237 0.38237127 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 9.8774 10.492 2 0.00085075 2360 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143.18 114.31 21814000 3787000 0 1950800 0 0 0 0 0 0 2390500 1150400 0 0 0 0 0 0 0 3852900 4582200 4100200 0 0 0 16199 256 15688 303254;303255;303256;303257;303258;303259;303260;303261 185899;185900;185901;185902;185903 185900 4 PGTADILVPR Unmodified 1037.5869 0.58694431 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1 1 1 1 28.519 27.26 2 1.9483E-13 14885 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 187 173.42 21431000 0 0 0 0 0 0 0 0 0 1748100 1561400 1665000 0 0 0 5279600 2730700 3217000 0 0 0 1443100 1712900 2072700 16200 458 15689 303262;303263;303264;303265;303266;303267;303268;303269;303270;303271 185904;185905;185906;185907 185904 1 PGTIKPHTK Unmodified 977.56581 0.56581494 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 4 4 3 1 1 1 1 2 1 1 2 2 1 1 6.5861 7.3078 1;2 2.6142E-25 1504 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 219.54 176.63 4981000000 0 0 0 5787800 0 8808000 2460200000 97899000 123430000 10178000 6673300 7283400 102490000 1782900000 101500000 0 0 0 80958000 82569000 98962000 4312400 0 7048300 16201 1048 15690 303272;303273;303274;303275;303276;303277;303278;303279;303280;303281;303282;303283;303284;303285;303286;303287;303288;303289;303290;303291;303292;303293;303294;303295;303296;303297;303298;303299;303300;303301;303302 185908;185909;185910;185911;185912;185913;185914;185915;185916;185917;185918;185919;185920;185921;185922;185923;185924;185925;185926;185927;185928 185923 20 PGTISPWSSK Unmodified 1058.5397 0.53965977 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 23.464 22.347 2 6.5315E-06 9419 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.05 115.28 36704000 0 0 0 0 0 0 12598000 12059000 12048000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16202 1107 15691 303303;303304;303305;303306;303307 185929;185930;185931;185932 185931 4 PGTMLVNTIK Unmodified 1072.5951 0.59506616 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.943 24.744 2 0.078314 11026 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 55.549 55.549 571300000 54542000 48665000 43478000 2119700 1739600 2077900 37275000 37856000 40173000 2433900 0 2382300 49294000 44973000 44036000 0 0 0 56663000 52007000 49105000 1303700 0 1175200 16203 1748 15692 303308;303309;303310;303311;303312;303313;303314;303315;303316;303317;303318;303319;303320;303321;303322;303323;303324;303325;303326 185933;185934 185933 0 PGTPAADMVDDVPEEEK Unmodified 1798.7931 0.79310986 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.253 27.997 2 2.0224E-39 12917 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 249.75 241.26 150500000 17711000 11359000 11770000 0 0 0 8883200 11059000 9702400 0 0 0 9798900 11059000 7096500 0 0 0 16558000 18823000 16678000 0 0 0 16204 862 15693 303327;303328;303329;303330;303331;303332;303333;303334;303335;303336;303337;303338 185935;185936;185937;185938;185939;185940;185941;185942;185943;185944;185945 185941 11 PGTPAADMVDDVPEEEKK Unmodified 1926.8881 0.88807287 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 2 1 2 2 2 2 1 1 1 23.476 22.687 2;3 2.5084E-29 9369 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 174.87 174.56 1620200000 174740000 160410000 141890000 2918700 2863700 2014500 83150000 78791000 74979000 9989700 7082900 7911500 107930000 101660000 90483000 0 0 0 176280000 196870000 189770000 3788900 2723600 3920200 16205 862 15694 303339;303340;303341;303342;303343;303344;303345;303346;303347;303348;303349;303350;303351;303352;303353;303354;303355;303356;303357;303358;303359;303360;303361;303362;303363;303364;303365;303366;303367 185946;185947;185948;185949;185950;185951;185952;185953;185954;185955;185956;185957;185958 185957 13 PGTSILEVTGEVVR Unmodified 1455.7933 0.79330827 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 40.553 38.895 2 0.016885 18727 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 59.57 55.925 70135000 9050200 8831400 7882700 0 0 0 7694600 6020900 9069600 0 0 0 3948900 3084300 3696800 0 0 0 0 6748800 4107100 0 0 0 16206 1100 15695 303368;303369;303370;303371;303372;303373;303374;303375;303376;303377;303378 185959 185959 0 PGTTITIPSQLLLPDAPR Unmodified 1889.0622 0.062212911 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 1 51.977 50.725 2;3 4.0281E-17 25130 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.18 186.1 783380000 120510000 126250000 115740000 0 0 0 112660000 126850000 119460000 0 0 0 9492300 12940000 10265000 0 0 0 5787800 13916000 9508200 0 0 0 16207 1831 15696 303379;303380;303381;303382;303383;303384;303385;303386;303387;303388;303389;303390;303391;303392;303393;303394;303395;303396;303397;303398;303399;303400 185960;185961;185962;185963;185964;185965;185966;185967;185968;185969;185970;185971;185972;185973 185960 12 PGTVLIDMSSIAPLASR Unmodified 1726.9288 0.9287559 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.259 51.011 2;3 1.3108E-19 25196 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 239.39 229.96 777520000 60978000 68174000 67449000 0 0 0 67271000 69616000 65993000 0 0 0 64784000 73066000 67200000 0 0 0 59162000 58829000 54993000 0 0 0 16208 671 15697 303401;303402;303403;303404;303405;303406;303407;303408;303409;303410;303411;303412;303413;303414;303415;303416;303417;303418;303419;303420;303421;303422;303423;303424 185974;185975;185976;185977;185978;185979;185980;185981;185982;185983;185984;185985 185975 12 PGVITGDDVQK Unmodified 1127.5823 0.58225287 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.06 16.876 2 3.0499E-10 5930 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 187.22 175.26 1363900000 80661000 74683000 75251000 0 0 0 181370000 177330000 144030000 0 0 0 108280000 95976000 98985000 0 0 0 110760000 109460000 107150000 0 0 0 16209 634 15698 303425;303426;303427;303428;303429;303430;303431;303432;303433;303434;303435;303436 185986;185987;185988;185989;185990;185991;185992 185987 7 PGWHIECSAMNCK Unmodified 1588.6585 0.65848783 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.289 21.951 3 4.7738E-08 9204 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.48 145.14 910190000 74465000 56454000 57609000 0 0 0 75128000 69283000 67897000 0 0 0 73193000 93537000 58729000 0 0 0 88031000 104540000 91333000 0 0 0 16210 1188 15699 303437;303438;303439;303440;303441;303442;303443;303444;303445;303446;303447;303448 185993;185994;185995;185996;185997;185998;185999;186000;186001;186002;186003;186004 185997 12 PGWVEHDPMEIWATQSSTLVEVLAK Oxidation (M) 2838.3898 0.38983099 239 P0A6F3 glpK Glycerol kinase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 53.833 52.416 3 3.5099E-15 25731 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.64 134.14 240410000 0 0 0 0 0 0 28979000 24730000 26059000 0 0 0 24155000 23837000 30135000 0 0 0 30532000 24537000 27442000 0 0 0 16211 239 15700 303449;303450;303451;303452;303453;303454;303455;303456;303457;303458;303459;303460;303461;303462;303463 186005;186006;186007;186008;186009;186010;186011;186012 186009 92 7 PGWVEHDPMEIWATQSSTLVEVLAK Unmodified 2822.3949 0.39491637 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 55.006 53.53 2;3 2.474E-111 26208 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 344.72 332.7 8574700000 160340000 133360000 133660000 0 0 0 932980000 866210000 920580000 0 0 0 981250000 966180000 879020000 0 0 0 896370000 857730000 847060000 0 0 0 16212 239 15700 303464;303465;303466;303467;303468;303469;303470;303471;303472;303473;303474;303475;303476;303477;303478;303479;303480;303481;303482;303483;303484;303485;303486 186013;186014;186015;186016;186017;186018;186019;186020;186021;186022;186023;186024;186025;186026;186027;186028;186029;186030;186031;186032 186024 20 PGYLEHFWALVNWEFVAK Unmodified 2205.1047 0.10474643 1008 P0AGD3 sodB Superoxide dismutase [Fe] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 2 2 2 1 2 2 1 2 2 1 1 53.858 52.354 2;3 1.4917E-17 26746 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 140.02 137.8 650710000 49467000 55589000 52939000 0 0 592830 86729000 86971000 79095000 0 0 0 31182000 32966000 29588000 0 0 0 52130000 47624000 41062000 0 3616000 1157200 16213 1008 15701 303487;303488;303489;303490;303491;303492;303493;303494;303495;303496;303497;303498;303499;303500;303501;303502;303503;303504;303505;303506;303507;303508;303509;303510 186033;186034;186035;186036;186037;186038;186039;186040;186041;186042;186043;186044 186035 11 PGYQCQHNLNYWR Unmodified 1734.7685 0.76850728 1601 P52062 yggW Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.641 21.688 3 0.082511 8936 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 26.541 26.138 90540000 6627500 7706000 7241700 0 0 0 8654800 5708000 7027300 0 0 0 5080700 6694500 5787900 0 0 0 10025000 10972000 9015400 0 0 0 16214 1601 15702 303511;303512;303513;303514;303515;303516;303517;303518;303519;303520;303521;303522 186045 186045 0 PHDTGMVTLISQDLSEFALHVR Unmodified 2465.2373 0.23729352 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.08 52.674 4 3.656E-28 25749 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 187.39 186.1 113130000 36260000 42030000 34840000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16215 1412 15703 303523;303524;303525 186046;186047;186048 186048 3 PHFCCLVPEK Unmodified 1285.5947 0.59474858 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 20.769 21.188 3 0.0019601 8096 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 55.064 51.852 43126000 5190600 0 5221100 0 0 0 3568800 0 0 0 0 0 6768300 3188700 4635800 0 0 0 5676900 5447900 3427700 0 0 0 16216 319 15704 303526;303527;303528;303529;303530;303531;303532;303533;303534 186049 186049 1 PHGAPVPENFR Unmodified 1219.6098 0.60980502 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 1 1 2 2 2 15.483 16.268 2;3 6.5037E-05 5584 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 90.15 82.225 560870000 94564000 84316000 75065000 0 0 0 77957000 62466000 61537000 0 0 0 13548000 12739000 10347000 0 0 0 20715000 25527000 22091000 0 0 0 16217 1817 15705 303535;303536;303537;303538;303539;303540;303541;303542;303543;303544;303545;303546;303547;303548;303549;303550;303551;303552;303553;303554;303555 186050;186051;186052;186053;186054;186055;186056;186057;186058;186059;186060;186061 186054 12 PHGAPVPENFRLEEDDVATPGEGQVLLR Unmodified 3041.5207 0.52066225 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.129 36.435 4 2.5287E-08 17960 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 109.68 104.63 265310000 48046000 49256000 40837000 0 0 0 28823000 27919000 21817000 0 0 0 9843200 0 8029100 0 0 0 11168000 10015000 9556400 0 0 0 16218 1817 15706 303556;303557;303558;303559;303560;303561;303562;303563;303564;303565;303566 186062;186063;186064;186065;186066;186067;186068 186064 6 PHLYCLPILK Unmodified 1252.7002 0.70019993 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 34.856 33.568 3 0.054283 15927 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 32.415 32.415 31017000 8218600 6788100 6745700 0 0 0 0 0 0 0 0 0 0 2423800 0 0 0 0 0 3372200 3468800 0 0 0 16219 104 15707 303567;303568;303569;303570;303571;303572 186069;186070 186070 0 PHPQVYLDCAAK Unmodified 1397.6762 0.67617003 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 16.753 17.51 2;3 0.00027103 6265 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.298 77.502 264590000 16722000 14219000 15405000 0 0 0 23948000 26195000 23299000 0 0 0 20279000 20885000 23270000 0 0 0 29521000 27678000 23170000 0 0 0 16220 1889 15708 303573;303574;303575;303576;303577;303578;303579;303580;303581;303582;303583;303584;303585;303586;303587;303588;303589;303590;303591;303592;303593;303594;303595;303596 186071;186072;186073 186073 2 PHSYDYDAIVIGSGPGGEGAAMGLVK Unmodified 2560.2268 0.22678841 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 2 2 1 1 1 43.133 41.577 2;3 1.6698E-40 20398 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 272.16 269.4 1166300000 203350000 173470000 137290000 5725400 6276100 4729500 57278000 61454000 55264000 0 7628900 8584000 38650000 50293000 47298000 4732500 0 0 105890000 97731000 89776000 2939200 4080300 3886600 16221 1302 15709 303597;303598;303599;303600;303601;303602;303603;303604;303605;303606;303607;303608;303609;303610;303611;303612;303613;303614;303615;303616;303617;303618;303619;303620;303621;303622;303623;303624 186074;186075;186076;186077;186078;186079;186080;186081;186082;186083;186084;186085;186086;186087;186088;186089 186084 16 PHVNVGTIGHVDHGK Unmodified 1565.8063 0.806273 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.044 12.879 3 0.15939 3437 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 13.976 7.2895 160870000 17149000 9122400 9445100 0 0 0 13678000 14929000 0 0 0 0 23033000 18280000 14425000 0 0 0 12439000 15260000 13111000 0 0 0 16222 1048 15710 303625;303626;303627;303628;303629;303630;303631;303632;303633;303634;303635 186090;186091 186090 1 PIADFDVYIDK Unmodified 1294.6445 0.64451877 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 2 1 2 43.341 41.856 2 1.8509E-05 20593 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.98 130.33 444130000 63593000 65300000 52432000 0 0 0 36472000 37067000 30426000 0 0 0 19536000 21442000 22186000 0 0 0 31401000 31707000 32564000 0 0 0 16223 1872 15711 303636;303637;303638;303639;303640;303641;303642;303643;303644;303645;303646;303647;303648;303649;303650;303651 186092;186093;186094;186095;186096;186097;186098;186099;186100;186101;186102;186103;186104;186105;186106;186107;186108 186094 15 PIAQALAEGK Unmodified 996.5604 0.56039521 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 1 2 1 1 1 1 1 1 1 18.075 18.579 2 4.3403E-05 6507 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 138.98 114.05 593410000 69344000 76706000 69504000 0 0 0 28065000 27549000 24349000 0 0 0 31786000 34662000 29469000 11549000 7395500 10014000 63042000 51097000 58879000 0 0 0 16224 729 15712 303652;303653;303654;303655;303656;303657;303658;303659;303660;303661;303662;303663;303664;303665;303666;303667;303668;303669;303670 186109;186110;186111;186112;186113;186114;186115;186116 186116 8 PIAVYGAGTGLGVAHLVHVDK Unmodified 2073.1371 0.13710919 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.16 33.696 3 3.6171E-10 16441 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 112.44 103.84 122800000 7387200 6914100 6299400 0 0 0 16088000 10880000 12045000 0 0 0 10825000 13124000 10143000 0 0 0 9425300 7635100 12034000 0 0 0 16225 285 15713 303671;303672;303673;303674;303675;303676;303677;303678;303679;303680;303681;303682 186117;186118;186119;186120;186121;186122 186119 6 PIAVYGAGTGLGVAHLVHVDKR Unmodified 2229.2382 0.23822022 285 P0A6V8 glk Glucokinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 30.866 29.479 4;5 1.4038E-10 14161 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.32 127.05 525180000 15419000 20568000 14719000 0 0 0 67519000 72118000 66999000 0 0 0 41181000 38639000 35075000 0 0 0 49302000 63922000 39720000 0 0 0 16226 285 15714 303683;303684;303685;303686;303687;303688;303689;303690;303691;303692;303693;303694;303695;303696;303697;303698;303699;303700;303701;303702;303703 186123;186124;186125;186126;186127;186128;186129;186130;186131;186132;186133;186134;186135 186124 12 PICVTAAADILR Unmodified 1298.7017 0.70165649 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 41.212 39.508 2 2.337E-05 19590 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.09 84.646 120740000 15822000 15929000 12641000 0 0 0 16370000 14885000 14506000 0 0 0 7383000 6783400 0 0 0 0 7871500 8551400 0 0 0 0 16227 530 15715 303704;303705;303706;303707;303708;303709;303710;303711;303712;303713 186136;186137 186137 2 PIDPNAMFLVATNNYR Unmodified 1834.9036 0.90360378 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 1 1 49.633 48.339 2;3 5.9914E-10 24166 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 139.48 130.75 151140000 12287000 10874000 9520100 0 0 0 10604000 51848000 11464000 0 0 0 6604100 7914800 8923300 0 0 0 7607600 7003300 6494400 0 0 0 16228 184 15716 303714;303715;303716;303717;303718;303719;303720;303721;303722;303723;303724;303725;303726 186138;186139;186140;186141;186142;186143 186141 6 PIFSQAR Unmodified 817.44464 0.44463717 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.629 20.355 2 0.00085075 5495 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 143.18 104.98 747010000 93282000 85468000 89557000 0 0 0 53705000 62525000 57558000 0 0 0 44027000 36164000 36594000 0 4525800 4876400 62527000 60012000 56187000 0 0 0 16229 1872 15717 303727;303728;303729;303730;303731;303732;303733;303734;303735;303736;303737;303738;303739;303740 186144;186145;186146;186147;186148;186149;186150 186150 7 PIGEVLSEAK Unmodified 1041.5706 0.57062555 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.769 22.964 2 0.00035783 10027 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 108.3 96.348 287710000 26947000 34323000 25743000 0 0 0 17594000 17596000 15944000 0 0 0 20158000 18883000 19106000 0 0 0 29599000 27095000 34717000 0 0 0 16230 863 15718 303741;303742;303743;303744;303745;303746;303747;303748;303749;303750;303751;303752 186151;186152;186153;186154 186154 2 PIGGWLFGR Unmodified 1001.5447 0.54468557 893 P0AEX3 kgtP Alpha-ketoglutarate permease yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.454 44.856 2 4.27E-06 21691 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 174.64 163.77 191670000 17047000 20192000 20603000 0 0 0 15709000 12226000 10433000 0 941480 1640300 11745000 10027000 11590000 0 0 0 19691000 22064000 14708000 1503800 1547000 0 16231 893 15719 303753;303754;303755;303756;303757;303758;303759;303760;303761;303762;303763;303764;303765;303766;303767;303768 186155;186156;186157;186158;186159;186160;186161;186162 186160 8 PIHGNPWEEMFYLDIQANLESAEMQK Unmodified 3089.4263 0.42629286 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.867 53.421 3 1.6776E-22 26404 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 170.59 164.7 242030000 60047000 62511000 62528000 0 0 0 0 5045000 0 0 0 0 8478700 0 8749800 0 0 0 9365900 12183000 13124000 0 0 0 16232 529 15720 303769;303770;303771;303772;303773;303774;303775;303776;303777 186163 186163 1 PIIDELQER Unmodified 1111.5873 0.58733824 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 2 2 2 24.484 23.843 2;3 0.14098 6243 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 19.094 6.0863 353940000 20187000 24653000 21975000 0 0 0 24422000 20331000 24069000 0 0 0 32433000 26747000 29488000 865760 0 0 42264000 44199000 42310000 0 0 0 16233 1172 15721 303778;303779;303780;303781;303782;303783;303784;303785;303786;303787;303788;303789;303790;303791;303792;303793 186164;186165;186166 186164 3 PIIEPLSK Unmodified 895.53787 0.53786886 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.194 24.162 2 0.0032013 10800 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 94.114 94.114 94703000 6393700 4986800 7597000 0 0 0 9434800 9449400 10829000 0 0 0 6636800 6467000 4875700 0 0 0 8812600 10273000 8947600 0 0 0 16234 408 15722 303794;303795;303796;303797;303798;303799;303800;303801;303802;303803;303804;303805 186167;186168;186169 186167 3 PIIIDVK Unmodified 796.50584 0.50584045 1570 P45470 yhbO Protein YhbO yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 28.34 27.007 2 0.0066942 12267 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.407 24.975 47518000 0 12759000 12908000 0 0 0 6077300 6489500 7205600 0 0 0 2078300 0 0 0 0 0 0 0 0 0 0 0 16235 1570 15723 303806;303807;303808;303809;303810;303811 186170;186171 186170 2 PILDIALQYR Unmodified 1200.6867 0.68665836 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.697 44.181 2 4.0142E-05 21963 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.53 121.29 151360000 0 13214000 0 0 0 0 28874000 28558000 25139000 0 0 0 0 8995100 0 0 0 0 16456000 16423000 13702000 0 0 0 16236 731 15724 303812;303813;303814;303815;303816;303817;303818;303819 186172;186173;186174;186175;186176;186177 186172 6 PILIGRPNVIEMR Unmodified 1506.8705 0.87045316 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 33.673 32.251 2;3 3.0637E-06 15119 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.82 125.82 1094000000 180090000 170000000 134990000 0 0 0 72797000 65314000 61005000 0 0 0 49182000 50184000 50915000 0 0 0 85119000 81964000 92399000 0 0 0 16237 1872 15725 303820;303821;303822;303823;303824;303825;303826;303827;303828;303829;303830;303831;303832;303833;303834;303835;303836;303837;303838;303839;303840;303841;303842 186178;186179;186180;186181;186182;186183;186184;186185;186186;186187;186188;186189;186190 186186 13 PIMAIAILGWPINK Unmodified 1535.8898 0.88979162 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.231 53.757 2 3.0247E-11 26488 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 174.02 161.41 471320000 42327000 34739000 44885000 0 0 0 50257000 44764000 38464000 0 0 0 41588000 32893000 34633000 0 0 0 41649000 31202000 33923000 0 0 0 16238 1119 15726 303843;303844;303845;303846;303847;303848;303849;303850;303851;303852;303853;303854 186191;186192;186193;186194;186195;186196;186197;186198;186199 186194 9 PINFQGLGGDEANTQAQGILER Unmodified 2327.1506 0.150587 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 43.935 42.243 3 0.0045766 16624 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 47.472 44.074 34794000 0 0 0 0 0 0 0 3057200 0 0 0 0 0 0 0 0 0 0 9110900 8440100 5392100 0 4330600 4463000 16239 1448 15727 303855;303856;303857;303858;303859;303860 186200 186200 1 PIPVAQLADADALMVR Unmodified 1678.9076 0.90762652 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.728 49.397 3 0.0043719 24120 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 61.641 61.233 99807000 10631000 10588000 10072000 0 0 0 7131200 6488700 5507500 0 0 0 8776900 8024000 8965000 0 0 0 8996000 5840600 8786400 0 0 0 16240 111 15728 303861;303862;303863;303864;303865;303866;303867;303868;303869;303870;303871;303872 186201;186202;186203 186202 1 PIQLPFIPHEDPR Unmodified 1557.8304 0.83036248 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 3 2 2 1 1 1 3 4 3 1 1 3 3 3 2 2 2 40.872 39.141 2;3 4.8678E-09 13900 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 170.72 133.24 16183000000 1454100000 1319700000 1175100000 244120000 206940000 218140000 1354100000 1259100000 1255000000 37544000 27783000 30761000 883210000 819280000 895980000 0 0 11799000 1378000000 1457700000 1340600000 298680000 272830000 242620000 16241 542 15729 303873;303874;303875;303876;303877;303878;303879;303880;303881;303882;303883;303884;303885;303886;303887;303888;303889;303890;303891;303892;303893;303894;303895;303896;303897;303898;303899;303900;303901;303902;303903;303904;303905;303906;303907;303908;303909;303910;303911;303912;303913;303914;303915;303916;303917;303918;303919;303920;303921;303922 186204;186205;186206;186207;186208;186209;186210;186211;186212;186213;186214;186215;186216;186217;186218;186219;186220;186221;186222;186223;186224;186225;186226;186227;186228;186229;186230;186231;186232;186233;186234;186235;186236;186237;186238;186239;186240;186241;186242;186243;186244;186245;186246;186247;186248;186249;186250;186251;186252;186253;186254 186238 50 PIQLPFIPHEDPRIWDSTDALELK Unmodified 2829.4701 0.47013023 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 52.705 51.403 4 0.0031241 18675 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 53.342 50.461 27949000 0 0 0 8701300 8737700 6574100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3935900 0 0 16242 542 15730 303923;303924;303925;303926 186255;186256;186257 186255 3 PITEPGVYSSGIPLQPNK Unmodified 1895.9993 0.9992783 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 1 1 1 2 2 2 2 2 2 1 1 37.496 35.725 2;3 7.2549E-45 17553 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 251.3 246.2 718280000 85475000 53712000 53612000 0 0 0 52908000 51607000 53981000 534100 1374100 1505000 56003000 56607000 49723000 0 0 0 77409000 63200000 57569000 0 1481000 1583200 16243 1185 15731 303927;303928;303929;303930;303931;303932;303933;303934;303935;303936;303937;303938;303939;303940;303941;303942;303943;303944;303945;303946;303947;303948;303949;303950 186258;186259;186260;186261;186262;186263;186264;186265;186266;186267;186268;186269;186270;186271;186272;186273;186274;186275;186276 186259 19 PIVMPLSNPTSR Unmodified 1310.7017 0.70165649 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.518 32.078 2 1.1341E-08 15255 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 174.41 171.15 1280900000 70044000 65403000 58484000 0 0 0 92428000 88842000 89509000 0 0 0 126190000 122270000 111380000 0 0 0 152030000 143860000 160410000 0 0 0 16244 1283 15732 303951;303952;303953;303954;303955;303956;303957;303958;303959;303960;303961;303962 186277;186278;186279;186280;186281;186282;186283;186284;186285;186286;186287 186281 9 PIVNLLPLEQDER Unmodified 1534.8355 0.83550744 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 47.263 46.015 2 0.056915 21675 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 45.158 40.458 6378100 0 0 0 0 0 0 0 0 0 0 0 0 2046300 0 1823400 0 0 0 0 2508400 0 0 0 0 16245 882 15733 303963;303964;303965 186288;186289 186288 0 PIVVINK Unmodified 781.50617 0.5061748 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.532 20.022 2 0.00078206 7721 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145 132.57 171060000 11500000 11986000 9438000 0 0 0 12897000 14008000 14546000 0 0 0 19200000 14072000 15121000 0 0 0 15381000 17828000 15086000 0 0 0 16246 1388 15734 303966;303967;303968;303969;303970;303971;303972;303973;303974;303975;303976;303977 186290;186291;186292;186293;186294;186295;186296;186297 186294 8 PIYDIANK Unmodified 932.49673 0.49673232 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.241 22.034 2 0.00096947 8802 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 115.46 98.904 143370000 19243000 14225000 17180000 0 0 0 9167600 11052000 12485000 0 0 0 12254000 8660400 11062000 0 0 0 8411800 10289000 9344700 0 0 0 16247 184 15735 303978;303979;303980;303981;303982;303983;303984;303985;303986;303987;303988;303989 186298;186299;186300 186299 3 PIYDIANKK Unmodified 1060.5917 0.59169534 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 15.386 16.199 2 0.035636 5253 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 60.478 37.764 46555000 4265700 6756000 5373400 0 0 0 7705500 8274600 0 0 0 0 2566900 2543800 2236600 0 0 0 3119600 3712500 0 0 0 0 16248 184 15736 303990;303991;303992;303993;303994;303995;303996;303997;303998;303999 186301 186301 1 PIYNAIVWQCR Unmodified 1418.7129 0.71288988 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 39.484 37.791 2 1.7733E-08 18403 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 219.7 201.84 196490000 4501200 5034400 0 0 0 0 23347000 21273000 21529000 0 0 0 18410000 21857000 16899000 0 0 0 19760000 22573000 21310000 0 0 0 16249 239 15737 304000;304001;304002;304003;304004;304005;304006;304007;304008;304009;304010 186302;186303;186304;186305 186302 4 PKEPAILAEISGIVSFGK Unmodified 1855.0455 0.045500215 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 53.023 52.702 3 1.3706E-06 20454 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 92.474 92.451 47874000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9206500 15738000 19899000 0 0 0 3030900 0 0 16250 458 15738 304011;304012;304013;304014 186306;186307;186308 186306 3 PKPTDKR Unmodified 840.48175 0.48175096 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 2 By matching By matching By MS/MS 1 1 1 5.7436 6.4427 2 0.072903 1044 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.469 36.468 41869000 14314000 15640000 11914000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16251 1408 15739 304015;304016;304017 186309 186309 1 PKTLFEPGEMVR Unmodified 1402.7279 0.72787125 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 1 By MS/MS By MS/MS 1 1 28.421 26.321 3 0.013827 9672 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 39.73 35.009 16656000 0 0 0 0 0 0 0 0 0 9192700 0 7463100 0 0 0 0 0 0 0 0 0 0 0 0 16252 936 15740 304018;304019 186310;186311 186311 2 PLAVIHAK Unmodified 847.52797 0.52797287 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 12.774 13.662 2 0.00088062 4060 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.22 102.52 178310000 0 0 0 0 0 0 31133000 21923000 26154000 0 0 0 20521000 21173000 14624000 0 0 0 14344000 12518000 15917000 0 0 0 16253 167 15741 304020;304021;304022;304023;304024;304025;304026;304027;304028 186312;186313;186314;186315;186316;186317;186318;186319 186314 7 PLCAVGAPAQVR Unmodified 1237.6601 0.66012603 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.961 22.017 2 6.8509E-12 8976 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 192.6 155.84 848370000 295280000 262990000 212840000 0 0 0 15458000 13290000 15140000 0 0 0 7100500 6665200 5897900 0 0 0 0 6338600 7374900 0 0 0 16254 921 15742 304029;304030;304031;304032;304033;304034;304035;304036;304037;304038;304039 186320;186321;186322 186320 3 PLCDDESDSPQAITR Unmodified 1702.7468 0.74682837 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.784 21.669 2 1.4965E-68 9065 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 317.65 317.65 87240000 0 0 0 0 0 0 13350000 11991000 12324000 0 1160000 1269400 6591700 8780200 6998100 0 0 0 7267100 10527000 6981500 0 0 0 16255 1088 15743 304040;304041;304042;304043;304044;304045;304046;304047;304048;304049;304050 186323;186324;186325;186326;186327;186328;186329;186330;186331 186324 9 PLDANQMAALVELLK Unmodified 1624.8858 0.88582845 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.208 53.735 2;3 2.2501E-35 26438 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 292.03 288.69 10634000000 1622800000 1496100000 1459300000 0 0 0 479840000 460680000 372530000 0 0 0 639200000 621410000 649800000 0 0 0 890900000 975880000 965660000 0 0 0 16256 1444 15744 304051;304052;304053;304054;304055;304056;304057;304058;304059;304060;304061;304062;304063;304064;304065;304066;304067;304068;304069;304070;304071;304072;304073;304074 186332;186333;186334;186335;186336;186337;186338;186339;186340;186341;186342;186343;186344;186345;186346;186347;186348 186343 17 PLDIDLPQLIVK Unmodified 1362.8123 0.8122528 1074 P11880 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.079 51.639 2 3.7542E-06 24466 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 134.68 134.68 431050000 46612000 36129000 33861000 0 0 0 32751000 33538000 31207000 0 0 0 36260000 35128000 33561000 0 0 0 35392000 37375000 39241000 0 0 0 16257 1074 15745 304075;304076;304077;304078;304079;304080;304081;304082;304083;304084;304085;304086 186349;186350;186351;186352;186353;186354;186355;186356 186354 8 PLDYTPR Unmodified 860.43922 0.43921744 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 0 By MS/MS By MS/MS 1 1 16.778 17.453 2 0.0083089 6198 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.357 64.486 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16258 1193 15746 304087;304088 186357;186358 186358 2 PLELQER Unmodified 883.47633 0.47633123 1983 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 2 2 1 1 1 1 1 32.181 30.605 2 0.0058251 10465 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 98.03 73.211 212870000 4434600 0 0 39191000 43289000 46067000 7348800 0 0 0 0 0 0 0 0 0 0 0 0 5129400 0 24564000 19582000 23260000 + + 16259 1983 15747 304089;304090;304091;304092;304093;304094;304095;304096;304097;304098;304099;304100 186359;186360;186361;186362 186360 3 PLELYHYPADR Unmodified 1372.6776 0.67755023 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 26.172 24.935 3 0.00034529 11295 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 80.245 71.544 86883000 0 0 0 0 0 0 9043100 7750000 7914000 0 0 929470 8765400 6668400 8296900 0 0 0 9060500 12703000 15218000 0 0 534120 16260 1718 15748 304101;304102;304103;304104;304105;304106;304107;304108;304109;304110;304111 186363;186364;186365;186366;186367;186368;186369;186370 186365 7 PLFDMAK Unmodified 820.41531 0.41531088 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 29.877 28.345 2 0.11613 12613 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 60.788 57.781 46984000 0 2125600 0 0 0 0 5628200 5523900 7019300 910200 750980 703910 4759000 3924000 3613600 0 0 0 4358800 4073400 3592700 0 0 0 16261 1944 15749 304112;304113;304114;304115;304116;304117;304118;304119;304120;304121;304122;304123;304124 186371 186371 0 PLFIVAEYWSHEVDK Unmodified 1831.9145 0.91448604 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.049 48.642 3 1.0642E-11 24034 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 162.48 161.29 347000000 32513000 21647000 22591000 0 0 0 47789000 50365000 41837000 0 0 0 19801000 15914000 16788000 0 0 0 28796000 24448000 24509000 0 0 0 16262 1282 15750 304125;304126;304127;304128;304129;304130;304131;304132;304133;304134;304135;304136 186372;186373;186374;186375;186376;186377;186378;186379;186380;186381;186382;186383 186374 12 PLFSSHMIDLSEESLQENIEICSK Unmodified 2805.3201 0.32009645 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 2 3 3 4 3 4 3 3 3 51.223 49.824 3;4 1.4513E-40 23851 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 208.92 208.04 3994400000 187030000 173160000 189510000 3185100 0 0 381470000 429230000 442240000 0 0 0 409150000 377170000 339440000 0 0 0 382370000 345980000 334500000 0 0 0 16263 634 15751 304137;304138;304139;304140;304141;304142;304143;304144;304145;304146;304147;304148;304149;304150;304151;304152;304153;304154;304155;304156;304157;304158;304159;304160;304161;304162;304163;304164;304165;304166;304167;304168;304169;304170;304171;304172 186384;186385;186386;186387;186388;186389;186390;186391;186392;186393;186394;186395;186396;186397;186398;186399;186400;186401;186402;186403;186404;186405;186406 186392 21 PLFTAEHYAR Unmodified 1203.6037 0.60365701 415 P0A8A8 rimP Ribosome maturation factor RimP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 19.535 19.891 3 0.0008468 7311 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 68.893 55.123 126050000 0 0 19722000 0 0 0 17687000 18275000 19080000 0 0 0 29052000 0 0 0 0 0 22238000 0 0 0 0 0 16264 415 15752 304173;304174;304175;304176;304177;304178 186407;186408;186409;186410;186411;186412 186412 6 PLGFMCIAPAMLPK Unmodified 1544.7917 0.79173383 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.295 51.855 2 2.3119E-11 25617 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.51 168.39 247860000 22827000 22972000 24288000 0 0 0 19182000 17474000 19360000 0 0 0 21112000 22968000 22060000 0 0 0 15257000 19458000 20899000 0 0 0 16265 681 15753 304179;304180;304181;304182;304183;304184;304185;304186;304187;304188;304189;304190 186413;186414;186415;186416;186417;186418;186419;186420;186421 186418 4 PLGIGVLTTAEK Unmodified 1197.6969 0.69688869 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.783 35.126 2 4.3273E-08 17338 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 157.66 135.58 547940000 40680000 32561000 36584000 0 0 0 59192000 62354000 60161000 0 0 0 48235000 37046000 34329000 0 0 0 45712000 44821000 46267000 0 0 0 16266 1119 15754 304191;304192;304193;304194;304195;304196;304197;304198;304199;304200;304201;304202 186422;186423;186424;186425;186426;186427;186428;186429;186430;186431;186432 186423 11 PLGPMLAHK Unmodified 962.53716 0.53715735 725 P0ACE7 hinT HIT-like protein HinT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.168 16.984 2 0.00026055 5604 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 121.29 111.11 771260000 114350000 107860000 94803000 0 0 0 64201000 66025000 74411000 0 0 0 41668000 42020000 43970000 0 0 0 36167000 45151000 40634000 0 0 0 16267 725 15755 304203;304204;304205;304206;304207;304208;304209;304210;304211;304212;304213;304214 186433;186434;186435;186436;186437;186438;186439;186440;186441;186442;186443;186444 186442 12 PLGPMLAHK Oxidation (M) 978.53207 0.53207197 725 P0ACE7 hinT HIT-like protein HinT yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 13.008 13.851 2 0.064063 4236 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 46.835 35.962 52301000 4482100 5733000 5595400 0 0 0 8923000 7070600 7766400 0 0 0 2633300 2472800 2946600 0 0 0 4677200 0 0 0 0 0 16268 725 15755 304215;304216;304217;304218;304219;304220;304221;304222;304223;304224 186445;186446;186447 186445 1 PLHNLTR Unmodified 849.48209 0.48208531 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.052 11.888 2 0.0017557 3002 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.37 111.82 238270000 45911000 57401000 40819000 0 0 0 0 0 0 0 0 0 12051000 14138000 11906000 0 0 0 21934000 15927000 18183000 0 0 0 16269 1850 15756 304225;304226;304227;304228;304229;304230;304231;304232;304233 186448;186449;186450 186450 3 PLHSAFNDEIPAIVDVFR Unmodified 2039.0476 0.04762548 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 52.213 51.045 3 4.3375E-14 25086 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.57 112.16 353480000 111090000 110670000 109930000 0 0 0 0 0 0 0 0 0 6718900 8682400 6394300 0 0 0 0 0 0 0 0 0 16270 1925 15757 304234;304235;304236;304237;304238;304239 186451;186452;186453 186451 3 PLKEETGISELDIAK Unmodified 1641.8825 0.88251721 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 28.702 27.455 2;3 1.2347E-14 12725 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 204.13 173.57 614370000 53191000 48284000 39070000 0 0 0 57798000 57229000 53384000 0 0 0 41037000 44265000 41249000 0 0 0 58404000 64521000 55939000 0 0 0 16271 1409 15758 304240;304241;304242;304243;304244;304245;304246;304247;304248;304249;304250;304251;304252;304253;304254;304255;304256;304257;304258;304259;304260;304261;304262;304263 186454;186455;186456;186457;186458;186459;186460;186461;186462;186463;186464;186465;186466;186467;186468;186469;186470 186460 14 PLLDSFTVDHTR Unmodified 1399.7096 0.70957864 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 3 3 1 2 2 2 1 1 1 1 1 2 2 2 1 1 1 31.547 30.081 2;3 3.1092E-18 14144 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.29 147.82 14697000000 1981600000 1766500000 1648200000 13118000 13064000 12540000 1456200000 1369400000 1527800000 20082000 18668000 11182000 633250000 605890000 758300000 7925800 6591700 5119300 978410000 791850000 1053200000 5298300 6428800 6500500 16272 1577 15759 304264;304265;304266;304267;304268;304269;304270;304271;304272;304273;304274;304275;304276;304277;304278;304279;304280;304281;304282;304283;304284;304285;304286;304287;304288;304289;304290;304291;304292;304293;304294;304295;304296;304297;304298;304299;304300;304301;304302;304303;304304 186471;186472;186473;186474;186475;186476;186477;186478;186479;186480;186481;186482;186483;186484;186485;186486;186487;186488;186489;186490;186491;186492;186493;186494;186495;186496;186497;186498;186499;186500;186501;186502 186486 31 PLLDVWMSHGDK Unmodified 1396.6809 0.68092105 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 2 2 2 2 2 37.599 35.932 2;3 2.7236E-05 17945 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.17 104.93 614110000 52338000 45548000 47928000 0 940220 356930 31317000 45381000 42936000 0 0 0 61141000 56451000 53288000 0 0 0 62425000 60358000 53705000 0 0 0 16273 86 15760 304305;304306;304307;304308;304309;304310;304311;304312;304313;304314;304315;304316;304317;304318;304319;304320;304321;304322;304323;304324;304325;304326;304327;304328 186503;186504;186505;186506;186507;186508;186509;186510;186511;186512;186513;186514;186515;186516;186517 186503 15 PLLGTLEYGLPHK Unmodified 1436.8028 0.80275075 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.438 35.764 3 1.12E-05 17842 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.09 105.15 150740000 11757000 11035000 8876100 0 0 0 18527000 23825000 17924000 0 0 0 8449700 10560000 8071800 0 0 0 12100000 10600000 9018000 0 0 0 16274 214 15761 304329;304330;304331;304332;304333;304334;304335;304336;304337;304338;304339;304340 186518;186519;186520;186521;186522;186523 186518 6 PLLHEVATGSLDEGVDALSYLAHAR Unmodified 2633.3449 0.34492971 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 49.798 48.38 4 3.6258E-22 23863 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.27 159.62 295890000 10060000 10829000 9665100 0 0 0 41505000 38934000 38001000 0 2679700 0 26207000 19460000 18974000 0 0 0 22284000 26200000 31090000 0 0 0 16275 27 15762 304341;304342;304343;304344;304345;304346;304347;304348;304349;304350;304351;304352;304353 186524;186525;186526;186527;186528;186529;186530;186531 186526 8 PLLIYGKPEAQQASGE Unmodified 1699.8781 0.87810054 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 30.358 28.898 2 5.0948E-11 13885 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 193.15 192.36 817340000 55255000 62752000 55736000 0 0 0 75342000 71446000 81401000 1051900 0 0 63484000 66313000 54509000 0 0 0 75300000 74850000 79898000 0 0 0 16276 244 15763 304354;304355;304356;304357;304358;304359;304360;304361;304362;304363;304364;304365;304366 186532;186533;186534;186535;186536;186537;186538;186539;186540;186541;186542 186532 11 PLLMHHITATSR Unmodified 1375.7394 0.73943898 1296 P27250 ahr Aldehyde reductase Ahr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 14.321 15.108 2;3 0.00010545 5058 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.838 84.618 121010000 18981000 30277000 26817000 0 0 0 0 0 13145000 0 0 0 0 9465400 0 0 0 0 8763900 6684500 6873400 0 0 0 16277 1296 15764 304367;304368;304369;304370;304371;304372;304373;304374;304375;304376;304377 186543;186544;186545;186546 186544 4 PLPGLPVIR Unmodified 960.61204 0.61203685 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.052 38.37 2 0.00010307 18520 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.35 125.36 113420000 9702300 10231000 9134300 211960 327790 0 5720800 4207000 5530700 0 0 0 6789900 6513000 6194500 0 0 0 16270000 17279000 15308000 0 0 0 16278 150 15765 304378;304379;304380;304381;304382;304383;304384;304385;304386;304387;304388;304389;304390;304391 186547;186548;186549;186550;186551;186552;186553;186554;186555;186556 186550 10 PLSAQQLAAQK Unmodified 1153.6455 0.64552182 1370 P31475 yieP Uncharacterized HTH-type transcriptional regulator YieP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.077 18.474 2 1.2099E-10 7128 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 196.79 189.23 732520000 53531000 52966000 42454000 1477400 1246100 1404200 72184000 82006000 66536000 2112200 1637100 2386500 58328000 58996000 52731000 1511300 1299000 1226000 59517000 56335000 59471000 2081400 0 1087100 16279 1370 15766 304392;304393;304394;304395;304396;304397;304398;304399;304400;304401;304402;304403;304404;304405;304406;304407;304408;304409;304410;304411;304412;304413;304414 186557;186558;186559;186560;186561;186562;186563;186564;186565;186566;186567;186568 186557 12 PLSELTVTILAK Unmodified 1283.7701 0.77005364 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 44.96 43.371 2 7.6835E-05 20148 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 100.58 64.028 55440000 7528100 0 0 0 0 0 7188900 8780600 6291200 0 0 0 6844300 0 5747900 0 0 0 6625600 6433200 0 0 0 0 16280 509 15767 304415;304416;304417;304418;304419;304420;304421;304422 186569;186570;186571;186572;186573;186574 186574 6 PLTESDWK Unmodified 974.47091 0.4709115 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.952 20.434 2 9.7266E-05 7835 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 161.68 150.31 830550000 65624000 62018000 54630000 0 0 0 82463000 81864000 90705000 0 0 0 63414000 54843000 58744000 0 0 0 74492000 66615000 75140000 0 0 0 16281 90 15768 304423;304424;304425;304426;304427;304428;304429;304430;304431;304432;304433;304434 186575;186576;186577;186578;186579 186578 5 PLTINLLYNTSDLHK Unmodified 1740.941 0.94103514 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 41.298 39.776 3 1.9872E-07 19304 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.22 124.19 265210000 83842000 87376000 70561000 0 0 0 0 0 0 0 0 0 3239000 0 3767800 0 0 0 5642600 6073500 4704800 0 0 0 16282 1217 15769 304435;304436;304437;304438;304439;304440;304441;304442 186580;186581;186582 186581 3 PLVASDDDPSGR Unmodified 1227.5731 0.57314474 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.091 16.729 2 1.6136E-07 5792 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 156.83 118.53 252120000 0 0 0 0 0 0 37591000 37033000 31553000 0 0 0 23328000 19221000 17426000 35926000 6659900 11657000 10210000 9805900 11709000 0 0 0 16283 506 15770 304443;304444;304445;304446;304447;304448;304449;304450;304451;304452;304453;304454 186583;186584;186585;186586;186587;186588;186589;186590 186585 8 PLVINSSSTIR Unmodified 1185.6717 0.67173657 327 P0A7B3 nadK NAD kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.415 23.488 2 7.6212E-06 10684 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 149.72 142.07 152310000 15621000 14576000 15234000 0 0 0 11774000 17810000 11849000 0 0 0 10171000 8647000 9125700 0 0 0 11202000 12861000 13443000 0 0 0 16284 327 15771 304455;304456;304457;304458;304459;304460;304461;304462;304463;304464;304465;304466 186591;186592;186593;186594;186595;186596;186597;186598;186599;186600 186592 8 PLVLLSPQATR Unmodified 1193.7132 0.71320746 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.88 33.424 2 0.12515 16033 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 40.724 32.192 49926000 6878900 6225300 6366200 0 0 0 2926200 3606500 3518700 0 0 0 2144500 3003300 3193900 0 0 0 3666300 4433100 3962800 0 0 0 16285 1295 15772 304467;304468;304469;304470;304471;304472;304473;304474;304475;304476;304477;304478 186601 186601 0 PLVPLDGGR Unmodified 922.52362 0.52361577 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.46 25.398 2 0.00012493 8447 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 133.12 80.433 416330000 23652000 17831000 19538000 0 0 0 14725000 0 13028000 17305000 14552000 13966000 13977000 14422000 14416000 50151000 29253000 30985000 18400000 21012000 19001000 19556000 23535000 27025000 16286 458 15773 304479;304480;304481;304482;304483;304484;304485;304486;304487;304488;304489;304490;304491;304492;304493;304494;304495;304496;304497;304498 186602;186603;186604;186605;186606;186607;186608;186609;186610;186611;186612;186613;186614 186602 6 PLVSYIDK Unmodified 933.51713 0.51713341 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 25.612 24.573 1;2 0.00071969 10774 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.04 109.07 580980000 167730000 152320000 134350000 0 0 0 24559000 22720000 20986000 0 0 0 10488000 7301600 8558000 0 0 0 11171000 9841100 10957000 0 0 0 16287 1160 15774 304499;304500;304501;304502;304503;304504;304505;304506;304507;304508;304509;304510;304511;304512;304513 186615;186616;186617;186618;186619;186620;186621;186622;186623;186624;186625;186626 186623 3 PLVVLQEIPEGNFFGK Unmodified 1785.9665 0.96652161 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 53.891 52.444 3 0.00013119 24893 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 48.351 46.865 56128000 0 2914800 0 0 0 0 5029200 4074700 4263800 0 0 0 5529200 4929200 6336400 0 0 0 10278000 6979700 5792700 0 0 0 16288 844 15775 304514;304515;304516;304517;304518;304519;304520;304521;304522;304523 186627 186627 1 PMDIEWAK Unmodified 988.4688 0.46880301 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.031 30.448 2 0.00029545 14725 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.34 139.66 1363800000 157390000 153340000 150220000 904930 1159500 1104000 83923000 88031000 89611000 2242700 2086100 2485100 92905000 84054000 86117000 0 0 0 114150000 130360000 119390000 1520400 1265600 1514100 16289 1210 15776 304524;304525;304526;304527;304528;304529;304530;304531;304532;304533;304534;304535;304536;304537;304538;304539;304540;304541;304542;304543;304544 186628;186629;186630;186631;186632;186633;186634;186635;186636;186637;186638;186639 186628 12 PMFGDNGSGMHCHMSLSK Unmodified 1991.811 0.81104208 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 1 2 2 2 2 3 2 20.813 21.169 2;3;4 1.9246E-17 8378 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 173.44 167.95 1674400000 254930000 240820000 209470000 0 0 0 90586000 113230000 90217000 0 1589900 0 110710000 87468000 99247000 0 0 0 132220000 136860000 107080000 0 0 0 16290 508 15777 304545;304546;304547;304548;304549;304550;304551;304552;304553;304554;304555;304556;304557;304558;304559;304560;304561;304562;304563;304564;304565;304566;304567;304568;304569;304570;304571;304572;304573 186640;186641;186642;186643;186644;186645;186646;186647;186648;186649;186650;186651;186652;186653;186654;186655 186646 14 PMGPNDYMVIGLAR Unmodified 1532.748 0.74795476 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 44.887 43.45 2;3 8.8342E-11 20429 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 181.53 167.32 604790000 20199000 0 0 0 0 0 98990000 90069000 91326000 2562700 2539200 3203200 63639000 44828000 46271000 3471100 1742100 1819300 43008000 46856000 44267000 0 0 0 16291 1745 15778 304574;304575;304576;304577;304578;304579;304580;304581;304582;304583;304584;304585;304586;304587;304588;304589;304590;304591;304592;304593;304594;304595;304596;304597;304598 186656;186657;186658;186659;186660;186661;186662;186663;186664;186665;186666;186667;186668;186669;186670;186671 186669 14 PMIVHVLER Unmodified 1092.6114 0.61138492 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 2 2 2 2 2 2 23.869 22.988 2;3 0.0071041 10201 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 78.516 72.756 266780000 27185000 22212000 18606000 0 0 0 17509000 18905000 19674000 0 0 0 18342000 19283000 19863000 0 0 0 30098000 22430000 32668000 0 0 0 16292 97 15779 304599;304600;304601;304602;304603;304604;304605;304606;304607;304608;304609;304610;304611;304612;304613;304614;304615;304616;304617;304618;304619;304620;304621 186672;186673;186674;186675;186676;186677;186678 186672 4 PMNCPGHVQIFNQGLK Unmodified 1838.892 0.89199324 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 27.049 25.893 2;3 1.8853E-14 12207 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.87 173.03 764760000 62931000 63235000 53524000 0 0 0 68760000 65717000 79510000 0 0 0 50224000 56851000 52835000 0 0 0 70538000 72739000 67899000 0 0 0 16293 445 15780 304622;304623;304624;304625;304626;304627;304628;304629;304630;304631;304632;304633;304634;304635;304636;304637;304638;304639;304640;304641;304642;304643;304644 186679;186680;186681;186682;186683;186684;186685;186686;186687;186688;186689;186690;186691 186679 13 PMNMHSFTWSPYLNHEWDEEYPNKVEMK Unmodified 3538.5421 0.54206767 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 41.675 40.023 5 1.4744E-05 19500 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 74.287 74.287 229740000 30573000 16900000 18343000 0 0 0 0 11055000 11157000 0 0 0 13982000 11414000 16696000 0 0 0 35987000 31201000 32436000 0 0 0 16294 937 15781 304645;304646;304647;304648;304649;304650;304651;304652;304653;304654;304655 186692 186692 1 PMSMELLLAGCTTTVTHR Unmodified 2016.9795 0.97948761 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.66 40.978 3 2.9656E-18 19928 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 178.01 172.34 476450000 38438000 38517000 34912000 0 0 0 45778000 40896000 35896000 0 0 0 35701000 40699000 34769000 0 0 0 46274000 45617000 38954000 0 0 0 16295 1237 15782 304656;304657;304658;304659;304660;304661;304662;304663;304664;304665;304666;304667 186693;186694;186695;186696;186697;186698;186699;186700;186701;186702;186703;186704 186700 12 PMTDRPGLDFSFSGLK Unmodified 1766.8662 0.86615564 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 41.333 39.486 3 1.432E-06 19205 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 90.561 89.662 626010000 42844000 39310000 41364000 0 0 0 46332000 35975000 44213000 4300300 2502500 3080700 48776000 41132000 39923000 0 0 0 81030000 76305000 78924000 0 0 0 16296 121 15783 304668;304669;304670;304671;304672;304673;304674;304675;304676;304677;304678;304679;304680;304681;304682;304683;304684 186705;186706;186707;186708;186709;186710;186711;186712;186713 186709 9 PMTPDGTPVVGR Unmodified 1225.6125 0.61250714 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 22.007 22.185 2 0.0011579 9149 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.294 64.143 62396000 9916400 8175500 6990900 0 0 0 0 0 0 0 0 0 12715000 12877000 11721000 0 0 0 0 0 0 0 0 0 16297 252 15784 304685;304686;304687;304688;304689;304690 186714 186714 1 PMTSTWWK Unmodified 1035.4848 0.48478743 452 P0A8Q0 frdC Fumarate reductase subunit C yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 32.285 30.843 2 0.0039041 13891 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 89.142 76.105 64476000 0 0 0 0 0 0 13051000 10695000 14254000 0 0 0 10634000 10103000 5738600 0 0 0 0 0 0 0 0 0 16298 452 15785 304691;304692;304693;304694;304695;304696 186715;186716;186717;186718;186719 186718 5 PMVAIVGGSK Oxidation (M) 973.52665 0.52665224 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1 1 1 1 17.512 18.07 2 0.0015889 6740 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.862 74.451 189910000 22900000 17191000 0 0 0 0 29176000 24305000 23874000 0 0 0 16339000 18956000 13541000 0 0 0 23633000 0 0 0 0 0 16299 321 15786 304697;304698;304699;304700;304701;304702;304703;304704;304705;304706 186720;186721;186722;186723;186724;186725 186720 145 2 PMVAIVGGSK Unmodified 957.53174 0.53173762 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.805 22.276 2 3.848E-05 9406 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.2 134.37 5507700000 457830000 456070000 359990000 0 0 0 708770000 615540000 647250000 0 0 0 391030000 376930000 340790000 0 0 0 383960000 358570000 411010000 0 0 0 16300 321 15786 304707;304708;304709;304710;304711;304712;304713;304714;304715;304716;304717;304718 186726;186727;186728;186729;186730;186731;186732;186733 186729 8 PMVDVIGWR Unmodified 1071.5535 0.55353569 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.685 39.994 2 2.9539E-11 19437 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 211.1 201.74 292020000 37506000 31130000 27635000 0 0 0 20226000 18478000 21288000 0 0 0 19156000 18786000 18906000 0 0 0 24982000 27293000 26630000 0 0 0 16301 1221 15787 304719;304720;304721;304722;304723;304724;304725;304726;304727;304728;304729;304730 186734;186735;186736;186737;186738;186739;186740;186741;186742;186743;186744;186745 186741 12 PMVIHNFLQSVR Unmodified 1439.7707 0.77073911 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 1 2 2 1 1 2 2 2 2 34.454 33.005 2;3 3.9953E-08 15741 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 159.4 149.75 341620000 88437000 77988000 67739000 0 0 0 13120000 14888000 15108000 0 0 0 2353800 0 7659500 0 0 0 16452000 20099000 17778000 0 0 0 16302 106 15788 304731;304732;304733;304734;304735;304736;304737;304738;304739;304740;304741;304742;304743;304744;304745;304746;304747;304748;304749;304750;304751 186746;186747;186748;186749;186750;186751;186752;186753;186754 186749 9 PNIELLPEGQFK Unmodified 1383.7398 0.73981614 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.807 39.142 2 2.4415E-06 18871 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.89 113.68 196050000 31920000 36399000 28423000 0 0 0 10237000 12085000 14263000 0 0 0 7122800 7504500 6322000 0 0 0 13810000 13183000 14776000 0 0 0 16303 198 15789 304752;304753;304754;304755;304756;304757;304758;304759;304760;304761;304762;304763 186755;186756;186757;186758;186759;186760;186761 186760 4 PNPAVLICR Unmodified 1038.5644 0.56443473 195 P08997 aceB Malate synthase A yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.317 25.228 2 0.00015189 11233 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 130.77 127.76 269390000 65998000 58345000 62647000 0 0 0 15517000 15602000 17878000 0 0 0 5814400 4254100 4291300 0 0 0 6102600 5896100 7044900 0 0 0 16304 195 15790 304764;304765;304766;304767;304768;304769;304770;304771;304772;304773;304774;304775 186762;186763;186764;186765;186766 186765 4 PNPTQATPIDK Unmodified 1180.6088 0.60880197 1738 P69739 hyaA Hydrogenase-1 small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 14.084 14.728 2 0.0016584 4770 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 79.148 69.934 60762000 0 0 0 0 0 0 19353000 20216000 18363000 924390 0 0 1905300 0 0 0 0 0 0 0 0 0 0 0 16305 1738 15791 304776;304777;304778;304779;304780 186767;186768;186769 186767 0 PNVIEMR Unmodified 857.44292 0.44292261 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.073 19.638 2 0.11634 7438 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.76 52.027 649500000 102400000 92207000 89292000 0 0 0 44114000 43509000 35622000 0 0 0 34585000 34452000 30319000 0 0 0 50047000 50599000 42352000 0 0 0 16306 1872 15792 304781;304782;304783;304784;304785;304786;304787;304788;304789;304790;304791;304792 186770;186771;186772;186773 186771 0 PNVTVDVASLCLK Unmodified 1414.749 0.74900062 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 40.173 38.678 2 5.5593E-05 18672 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 108.7 100.16 243510000 64589000 56833000 56422000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37986000 27685000 0 0 0 16307 148 15793 304793;304794;304795;304796;304797 186774;186775;186776;186777;186778 186778 0 PQDHSQK Unmodified 838.39333 0.39332988 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2.6089 3.5208 2 0.0020492 448 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 119.17 110.49 48593000 14450000 15080000 11752000 0 0 0 0 0 0 0 0 0 0 3853700 3288400 0 0 0 0 167930 0 0 0 0 16308 1630 15794 304798;304799;304800;304801;304802;304803 186779;186780;186781;186782 186780 4 PQETFESGIR Unmodified 1162.5619 0.56185177 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.384 19.86 2 0.00018902 7288 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 122.28 97.358 136800000 3587800 2983000 2887700 0 0 0 10250000 11027000 16162000 0 0 0 12355000 11153000 11838000 0 0 0 19350000 17744000 17461000 0 0 0 16309 1496 15795 304804;304805;304806;304807;304808;304809;304810;304811;304812;304813;304814;304815 186783;186784;186785;186786;186787 186786 3 PQGGIGLLTVK Unmodified 1081.6495 0.64954457 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.614 31.264 2 6.1766E-08 14029 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 175.93 167.17 332370000 22773000 20339000 12801000 0 0 0 28018000 24222000 25696000 0 0 0 28092000 30731000 28135000 0 0 0 38147000 36770000 36644000 0 0 0 16310 720 15796 304816;304817;304818;304819;304820;304821;304822;304823;304824;304825;304826;304827 186788;186789;186790;186791;186792;186793;186794;186795;186796;186797;186798;186799 186799 12 PQHVICHLTDENASISMR Unmodified 2106.9939 0.99389212 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 2 1 2 2 2 2 1 2 21.475 21.247 3;4 1.0222E-13 6178 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 135.27 126.96 91493000 0 3142900 0 0 0 0 0 2669200 0 6714800 2754900 5860700 0 0 3256100 14512000 16607000 15931000 0 0 0 9714800 2848700 7480300 16311 383 15797 304828;304829;304830;304831;304832;304833;304834;304835;304836;304837;304838;304839;304840;304841;304842;304843;304844;304845;304846 186800;186801;186802;186803;186804;186805;186806 186804 7 PQIDTLVFSITPDASVR Unmodified 1857.9836 0.98362824 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 52.354 51.148 2;3 7.843E-19 25185 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 234.82 217.15 178730000 63946000 57219000 57563000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16312 1219 15798 304847;304848;304849;304850;304851;304852 186807;186808;186809;186810;186811;186812 186807 6 PQINAEEEIR Unmodified 1197.599 0.59896556 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.503 19.99 2 0.01343 7862 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.04 60.294 195010000 20594000 21096000 13487000 0 0 0 25287000 24955000 24299000 0 0 0 11035000 11792000 7552800 0 0 0 10504000 11480000 12927000 0 0 0 16313 1154 15799 304853;304854;304855;304856;304857;304858;304859;304860;304861;304862;304863;304864 186813;186814 186814 0 PQINAEEEIRR Unmodified 1353.7001 0.70007659 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 2 2 2 15.372 16.164 2;3 3.6239E-10 5652 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 188.04 170.81 687240000 72597000 77297000 82432000 0 0 0 77464000 86780000 75650000 0 0 0 36463000 26964000 24291000 0 0 0 42773000 42003000 42526000 0 0 0 16314 1154 15800 304865;304866;304867;304868;304869;304870;304871;304872;304873;304874;304875;304876;304877;304878;304879;304880;304881;304882;304883;304884;304885;304886;304887;304888;304889 186815;186816;186817;186818;186819;186820;186821;186822;186823;186824;186825;186826;186827;186828;186829;186830;186831 186815 17 PQQNYLDELTPAFTSLLAIK Unmodified 2261.1943 0.1943493 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.54 54.053 2 5.4451E-46 26881 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 261.35 254.76 206370000 0 1979800 0 0 0 0 44945000 40050000 43561000 0 0 0 23129000 15224000 17822000 0 0 0 6177900 8029500 5449300 0 0 0 16315 1861 15801 304890;304891;304892;304893;304894;304895;304896;304897;304898;304899 186832;186833;186834;186835 186833 4 PQSQEAYGCMLR Unmodified 1438.6333 0.63331893 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.027 22.377 2 8.012E-40 9391 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 286.53 275.51 202380000 47402000 52009000 44306000 0 0 0 6251400 3742600 6662700 0 0 0 5172100 5253600 6462200 0 0 0 6534600 11161000 7417900 0 0 0 16316 1501 15802 304900;304901;304902;304903;304904;304905;304906;304907;304908;304909;304910;304911 186836;186837;186838;186839;186840 186838 3 PRPPMPASVWVQVDVADSPHLIER Unmodified 2695.3904 0.39044012 524 P0A9I3 gcvR Glycine cleavage system transcriptional repressor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 1 2 1 2 43.291 41.778 3;4 2.5204E-10 20685 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 126.04 123.35 687820000 115680000 96798000 75968000 0 0 0 52235000 68001000 14852000 0 0 0 43561000 39160000 30644000 0 0 0 52805000 44864000 53250000 0 0 0 16317 524 15803 304912;304913;304914;304915;304916;304917;304918;304919;304920;304921;304922;304923;304924;304925;304926;304927;304928;304929;304930;304931;304932 186841;186842;186843;186844;186845;186846;186847;186848;186849;186850;186851;186852;186853 186842 13 PSAHSVK Unmodified 724.38679 0.38678794 488 P0A951 speG Spermidine N(1)-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 6.4537 7.1863 2 0.049064 1284 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 63.21 44.525 47395000 20390000 15926000 11079000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16318 488 15804 304933;304934;304935 186854;186855;186856 186855 3 PSANYVGPEDRPFVALDK Unmodified 1973.9847 0.98469087 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 31.63 30.491 3 2.3613E-05 14192 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.94 80.46 128030000 42234000 39261000 46531000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16319 1374 15805 304936;304937;304938 186857;186858 186858 2 PSATSLAQVPGK Unmodified 1154.6295 0.62953741 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.621 20.111 2 1.1623E-11 7423 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 185.29 157.41 100210000 7306200 5584500 6053500 0 0 0 9836300 9543400 10230000 0 0 0 9901700 8204600 10488000 0 0 0 7490600 8152500 7423000 0 0 0 16320 253 15806 304939;304940;304941;304942;304943;304944;304945;304946;304947;304948;304949;304950 186859;186860 186860 2 PSAWYAADYCAWPMASLESDSLTLPATLNPGLDFSDEVVR Unmodified 4415.0402 0.04023978 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 1 2 2 2 2 1 2 1 1 1 52.647 51.595 4 0.16051 20407 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 1.1251 1.1251 380820000 0 0 0 47431000 30718000 43175000 0 0 0 51498000 65454000 68173000 0 0 0 7179000 14669000 12729000 0 0 0 17703000 0 22094000 16321 1835 15807 304951;304952;304953;304954;304955;304956;304957;304958;304959;304960;304961;304962;304963;304964;304965;304966;304967 186861;186862 186861 2 PSDEELAGFKPDFIVMNGAK Unmodified 2164.0511 0.051055878 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.71 43.195 3 1.2993E-14 20943 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.66 139.38 348080000 54309000 48073000 43504000 0 0 0 21826000 19206000 20969000 0 0 0 19158000 20882000 20309000 0 0 0 27043000 30124000 22683000 0 0 0 16322 1195 15808 304968;304969;304970;304971;304972;304973;304974;304975;304976;304977;304978;304979 186863;186864;186865;186866;186867;186868;186869;186870;186871;186872 186869 10 PSDLIPELQGR Unmodified 1223.651 0.65100113 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 35.209 33.728 2;3 7.1146E-06 16515 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.27 147.87 1559600000 144530000 126420000 107240000 3121300 2852800 2887500 139950000 121380000 136650000 14058000 13024000 13845000 107150000 104240000 96280000 2575100 1523800 1622200 135330000 135430000 129530000 6878500 5960000 7130400 16323 245 15809 304980;304981;304982;304983;304984;304985;304986;304987;304988;304989;304990;304991;304992;304993;304994;304995;304996;304997;304998;304999;305000;305001;305002;305003;305004;305005;305006 186873;186874;186875;186876;186877;186878;186879;186880;186881;186882;186883;186884;186885;186886;186887;186888;186889;186890;186891;186892;186893;186894 186877 21 PSDLNRPGHVFPLR Unmodified 1603.8583 0.85830857 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 21.004 21.335 2;3;4 9.8498E-15 8082 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 150.49 144.19 2319700000 92903000 89195000 84620000 0 0 0 322290000 289360000 310670000 0 0 0 177640000 157790000 186870000 0 0 0 207990000 212040000 188350000 0 0 0 16324 348 15810 305007;305008;305009;305010;305011;305012;305013;305014;305015;305016;305017;305018;305019;305020;305021;305022;305023;305024;305025;305026;305027;305028;305029;305030;305031;305032;305033;305034;305035;305036;305037;305038;305039;305040;305041;305042 186895;186896;186897;186898;186899;186900;186901;186902;186903;186904;186905;186906;186907;186908;186909;186910;186911;186912;186913;186914;186915;186916;186917;186918;186919;186920;186921;186922;186923;186924;186925 186918 31 PSEGETLIAR Unmodified 1071.556 0.55603812 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 2 2 2 18.318 18.959 2 2.1962E-09 7336 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 198.65 158.54 440210000 16958000 18308000 17448000 0 0 0 38781000 36876000 38789000 0 0 0 45463000 41947000 31159000 0 0 0 49095000 54620000 50766000 0 0 0 16325 107 15811 305043;305044;305045;305046;305047;305048;305049;305050;305051;305052;305053;305054;305055;305056;305057;305058;305059 186926;186927;186928;186929;186930;186931;186932;186933;186934;186935;186936 186926 11 PSFDIVSEVDLQEAR Unmodified 1703.8366 0.83662965 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 5 3 6 4 1 1 2 1 3 3 3 3 49.504 48.135 2 1.6052E-15 22739 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 237.49 236.24 398180000 70012000 52792000 69385000 0 0 0 44064000 9167200 25559000 0 0 0 19935000 6314300 23754000 0 0 0 19989000 31767000 25444000 0 0 0 16326 423 15812 305060;305061;305062;305063;305064;305065;305066;305067;305068;305069;305070;305071;305072;305073;305074;305075;305076;305077;305078;305079;305080;305081;305082;305083;305084;305085;305086;305087;305088;305089;305090;305091;305092;305093;305094 186937;186938;186939;186940;186941;186942;186943;186944;186945;186946;186947;186948;186949;186950;186951;186952;186953;186954;186955;186956;186957 186946 16 PSFQDVLEFVR Unmodified 1335.6823 0.68230126 446 P0A8M6 yeeX UPF0265 protein YeeX yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.453 52.013 2 8.4065E-11 25483 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 198.72 196.66 337070000 30797000 29508000 30379000 0 0 0 39796000 38775000 37216000 0 0 0 23514000 22870000 23705000 0 0 0 20127000 19396000 20985000 0 0 0 16327 446 15813 305095;305096;305097;305098;305099;305100;305101;305102;305103;305104;305105;305106 186958;186959;186960;186961;186962;186963;186964;186965;186966 186961 9 PSFTLADNEMEFGVGIHGEPGIDR Unmodified 2587.2013 0.20130194 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 46.662 45.184 3 5.5326E-31 22303 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 198.54 198.5 171970000 0 0 0 0 0 0 33024000 28111000 30562000 0 0 0 12420000 15913000 17024000 0 0 0 12519000 13222000 9180900 0 0 0 16328 1806 15814 305107;305108;305109;305110;305111;305112;305113;305114;305115 186967;186968;186969;186970;186971;186972 186969 5 PSFTMGGSGGGIAYNR Unmodified 1570.7198 0.71982575 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 30.281 29.079 2 6.7413E-10 13595 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 174.42 173.01 258990000 63404000 57449000 50225000 0 0 0 0 0 0 0 0 0 6675700 4581500 6240300 0 0 0 23266000 24897000 22249000 0 0 0 16329 65 15815 305116;305117;305118;305119;305120;305121;305122;305123;305124 186973;186974;186975;186976;186977 186974 5 PSFTMGGSGGGIAYNREEFEEICAR Unmodified 2734.2115 0.21154905 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 38.878 37.364 3 1.1258E-40 18125 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 209.56 209.56 214310000 44388000 44503000 36597000 0 0 0 0 0 0 0 0 0 6036400 5621900 4749200 0 0 0 26799000 19451000 26169000 0 0 0 16330 65 15816 305125;305126;305127;305128;305129;305130;305131;305132;305133 186978;186979;186980;186981;186982;186983 186982 6 PSGASFTGETIER Unmodified 1350.6416 0.64155866 1368 P31455 yidR Uncharacterized protein YidR yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 21.802 21.705 2 0.00021851 9075 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 85.813 73.587 41916000 0 0 0 0 0 0 5787100 5789400 7621400 0 0 0 0 0 9370500 0 0 0 7169300 6178500 0 0 0 0 16331 1368 15817 305134;305135;305136;305137;305138;305139 186984 186984 1 PSGILAPVEADAR Unmodified 1294.6881 0.68811492 1208 P23522 garL 5-keto-4-deoxy-D-glucarate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.378 29.022 2 4.9129E-07 13876 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.71 136.48 477010000 44864000 35475000 34591000 0 0 0 39254000 42621000 43786000 0 0 0 43503000 43015000 40354000 0 0 0 35637000 41182000 32730000 0 0 0 16332 1208 15818 305140;305141;305142;305143;305144;305145;305146;305147;305148;305149;305150;305151 186985;186986;186987;186988;186989;186990;186991;186992;186993;186994;186995;186996 186986 12 PSHPDIPGVEYGIDSDGFFALPALPER Unmodified 2895.4079 0.4079239 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.108 52.668 3 6.6814E-23 26086 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 172.61 171.79 823910000 75908000 80801000 64214000 0 0 0 65429000 69681000 54998000 0 0 0 65115000 74415000 71782000 0 0 0 71082000 66568000 63915000 0 0 0 16333 128 15819 305152;305153;305154;305155;305156;305157;305158;305159;305160;305161;305162;305163 186997;186998;186999;187000;187001;187002;187003;187004;187005;187006;187007;187008 187003 12 PSLLITTDDQLPR Unmodified 1467.7933 0.79330827 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 39.718 38.016 2 2.4552E-05 18505 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.11 97.699 43722000 0 0 0 0 0 0 3286700 0 1991100 0 0 0 6079200 5070000 4551400 0 0 0 7223700 9038700 6481300 0 0 0 16334 1070 15820 305164;305165;305166;305167;305168;305169;305170;305171 187009;187010 187009 2 PSLLMCK Unmodified 847.42958 0.42958073 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By matching By MS/MS 1 1 22.197 21.824 2 0.11717 9124 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 60.648 43.283 11039000 0 0 0 0 0 0 5932900 5106200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16335 1299 15821 305172;305173 187011 187011 0 PSLQGYITTR Unmodified 1134.6033 0.60332266 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.567 26.42 2 0.00014792 11874 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.07 121.08 266490000 42071000 42487000 42007000 0 0 0 33006000 32411000 33889000 0 0 0 6025600 8139200 8233000 0 0 0 5258100 6574900 6394100 0 0 0 16336 1316 15822 305174;305175;305176;305177;305178;305179;305180;305181;305182;305183;305184;305185 187012;187013;187014;187015;187016;187017 187017 6 PSPIMTDEQAR Unmodified 1243.5867 0.58668632 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 1 1 1 1 1 1 1 1 1 1 2 17.155 17.864 2 0.00010091 6583 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.68 115.76 109760000 12187000 8935900 7046800 0 0 0 9011300 8858100 8033700 0 0 0 7544400 5507000 7268200 0 0 0 8060100 8535200 18772000 0 0 0 16337 688 15823 305186;305187;305188;305189;305190;305191;305192;305193;305194;305195;305196;305197;305198;305199 187018;187019;187020 187018 3 PSPQHQYQPPYASAQPR Unmodified 1950.9337 0.93365835 1882 P77173 zipA Cell division protein ZipA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.018 16.834 3 1.3681E-06 5936 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 94.882 89.777 135240000 12029000 10652000 7739200 0 0 0 13204000 11706000 14913000 0 0 0 8355500 7970300 10541000 0 0 0 13728000 13965000 10434000 0 0 0 16338 1882 15824 305200;305201;305202;305203;305204;305205;305206;305207;305208;305209;305210;305211 187021;187022;187023;187024;187025;187026 187022 6 PSPWIIR Unmodified 867.49667 0.49667274 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 31.909 30.557 2 0.0017585 14393 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 124.32 124.32 211050000 18014000 19325000 18603000 1234700 0 0 16480000 16625000 15864000 0 0 0 17101000 17379000 15167000 0 0 0 19272000 18304000 17678000 0 0 0 16339 906 15825 305212;305213;305214;305215;305216;305217;305218;305219;305220;305221;305222;305223;305224 187027;187028;187029;187030;187031;187032;187033 187031 7 PSSEVSMIHAR Unmodified 1212.5921 0.59210605 779 P0ADB1 osmE Osmotically-inducible lipoprotein E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 13.938 14.805 2 0.001381 4415 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 81.525 61.748 268540000 44373000 48298000 44339000 0 0 0 35378000 32020000 32457000 0 0 0 4075500 3141700 3050100 0 0 0 9898300 11513000 0 0 0 0 16340 779 15826 305225;305226;305227;305228;305229;305230;305231;305232;305233;305234;305235 187034;187035;187036 187035 0 PSTSMSADGPFNLYNAVVTAADK Unmodified 2355.1053 0.10527629 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 53.641 52.197 2;3 5.2741E-103 25782 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 431.17 428.54 1438100000 0 3789600 3086400 0 0 0 148120000 156200000 169090000 0 0 0 190950000 194410000 203800000 0 0 0 121020000 121050000 126580000 0 0 0 16341 40 15827 305236;305237;305238;305239;305240;305241;305242;305243;305244;305245;305246;305247;305248;305249;305250;305251;305252;305253;305254;305255 187037;187038;187039;187040;187041;187042;187043;187044;187045;187046;187047;187048;187049;187050;187051;187052;187053;187054 187041 18 PSTYASIISTIQDR Unmodified 1550.794 0.79403656 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 42.235 40.606 2;3 1.7429E-14 19745 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 190.26 172.89 311550000 27190000 22765000 24264000 0 0 0 0 6459000 34176000 0 0 0 35015000 30032000 33164000 0 0 0 35932000 29031000 33526000 0 0 0 16342 124 15828 305256;305257;305258;305259;305260;305261;305262;305263;305264;305265;305266;305267;305268;305269;305270;305271;305272;305273;305274;305275;305276 187055;187056;187057;187058;187059;187060;187061;187062;187063 187058 9 PSVDTGMGLER Unmodified 1160.5496 0.54957253 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.749 22.229 2 3.5693E-14 9687 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 208.25 190.02 386350000 37116000 34633000 30443000 0 0 0 42526000 35354000 40341000 0 0 0 45302000 33435000 36297000 0 0 0 0 0 50897000 0 0 0 16343 59 15829 305277;305278;305279;305280;305281;305282;305283;305284;305285;305286;305287;305288 187064;187065;187066;187067;187068;187069;187070;187071;187072;187073;187074;187075 187065 12 PSVLALNIQR Unmodified 1109.6557 0.65569258 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.817 32.377 2 4.2675E-09 15856 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 194.44 186.96 219040000 17345000 16574000 14860000 0 0 0 21202000 19070000 18135000 0 0 0 18407000 18164000 14246000 0 0 0 23288000 18412000 19332000 0 0 0 16344 1044 15830 305289;305290;305291;305292;305293;305294;305295;305296;305297;305298;305299;305300 187076;187077;187078;187079;187080;187081;187082;187083;187084;187085;187086 187076 6 PSWDHSR Unmodified 883.39366 0.39366423 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.951 11.749 2 0.14188 3002 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 48.561 48.561 101260000 19253000 23833000 0 0 0 0 12400000 10389000 11962000 0 0 0 4208400 0 0 0 0 0 6253500 6425400 6535800 0 0 0 16345 1508 15831 305301;305302;305303;305304;305305;305306;305307;305308;305309 187087 187087 0 PSYGLTDSEIASMIK Unmodified 1610.7862 0.78617399 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.558 44.118 2 5.4316E-27 21536 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 233.32 223.66 449050000 34009000 32654000 24870000 0 0 0 28348000 32683000 32823000 0 0 0 39102000 45609000 40154000 0 0 0 48592000 45120000 45088000 0 0 0 16346 294 15832 305310;305311;305312;305313;305314;305315;305316;305317;305318;305319;305320;305321 187088;187089;187090 187089 2 PSYVLGGR Unmodified 847.4552 0.45520186 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.456 19.055 2 3.1942E-05 7205 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 174.64 149.08 820290000 169940000 162760000 131560000 0 0 0 16537000 17216000 20069000 0 0 0 18698000 18923000 18046000 0 0 0 90684000 83810000 72049000 0 0 0 16347 65 15833 305322;305323;305324;305325;305326;305327;305328;305329;305330;305331;305332;305333 187091;187092;187093;187094;187095;187096;187097;187098;187099 187091 9 PTADLCIDCK Unmodified 1191.5264 0.52639425 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 1 2 1 1 1 2 2 2 1 1 1 2 3 2 1 1 1 3 3 3 1 1 1 21.609 21.632 2 3.4455E-31 8798 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 276.39 276.39 5436400000 359160000 302280000 312570000 996430 1322200 939510 365120000 330790000 323600000 2533000 1450900 1758800 663110000 630730000 619370000 3308200 2062600 2031200 494900000 517490000 498020000 1030700 813640 1057900 16348 674 15834 305334;305335;305336;305337;305338;305339;305340;305341;305342;305343;305344;305345;305346;305347;305348;305349;305350;305351;305352;305353;305354;305355;305356;305357;305358;305359;305360;305361;305362;305363;305364;305365;305366;305367;305368;305369;305370;305371;305372;305373 187100;187101;187102;187103;187104;187105;187106;187107;187108;187109;187110;187111;187112;187113;187114;187115;187116;187117;187118;187119;187120;187121;187122;187123;187124;187125;187126;187127;187128;187129;187130;187131;187132;187133;187134;187135;187136;187137;187138;187139;187140 187110 39 PTAGSTLWLHLAENQLHLFDGETGQR Unmodified 2890.4362 0.43620434 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 52.069 50.807 4 0.10028 24712 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 55.358 53.014 129600000 0 0 0 0 0 0 9679900 10029000 9120600 0 0 0 7060400 9503300 11558000 0 0 0 26771000 27291000 18584000 0 0 0 16349 1064 15835 305374;305375;305376;305377;305378;305379;305380;305381;305382 187141 187141 0 PTDKPNLVCGPVQICWHK Unmodified 2148.0608 0.060849478 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 3 3 3 1 2 2 2 2 2 2 30.758 29.335 2;3;4 8.7443E-23 13936 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 213.67 208.17 4874700000 472900000 481100000 438130000 0 0 0 1131600000 999670000 1126800000 1574300 0 0 35917000 32943000 30804000 0 0 0 40127000 43002000 40130000 0 0 0 16350 1755;1756 15836 305383;305384;305385;305386;305387;305388;305389;305390;305391;305392;305393;305394;305395;305396;305397;305398;305399;305400;305401;305402;305403;305404;305405;305406;305407;305408;305409;305410;305411;305412;305413 187142;187143;187144;187145;187146;187147;187148;187149;187150;187151;187152;187153;187154;187155;187156;187157;187158;187159;187160 187150 18 PTEGEYNEEFSLLPVVNYLK Unmodified 2340.1525 0.15254406 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 3 2 2 2 2 2 2 54.954 53.484 2;3 1.9832E-82 26323 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 426 423.4 3130600000 239980000 284210000 241860000 0 0 0 284970000 377770000 324690000 0 0 0 215200000 226030000 203120000 0 0 0 249960000 248040000 234820000 0 0 0 16351 321 15837 305414;305415;305416;305417;305418;305419;305420;305421;305422;305423;305424;305425;305426;305427;305428;305429;305430;305431;305432;305433;305434;305435;305436;305437;305438;305439;305440;305441 187161;187162;187163;187164;187165;187166;187167;187168;187169;187170;187171;187172;187173;187174;187175;187176;187177;187178;187179;187180;187181;187182;187183 187166 23 PTFIDEVKPVNVEAVR Unmodified 1811.9781 0.97814893 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.684 35.012 3 0.0066159 17141 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 50.324 48.501 83644000 4514100 0 4482500 0 0 0 9617300 4164600 9004900 0 800240 0 5567700 6529900 7922500 0 0 0 11416000 10698000 8926500 0 0 0 16352 649 15838 305442;305443;305444;305445;305446;305447;305448;305449;305450;305451;305452;305453 187184;187185;187186;187187 187184 4 PTILPLAGDQQR Unmodified 1307.7197 0.7197494 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.835 31.395 2 2.9336E-08 14943 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.97 152.44 131400000 20003000 15847000 15023000 0 0 0 12646000 9741000 8764400 0 0 0 6305000 7969700 7652300 0 0 0 9859200 8503600 9089300 0 0 0 16353 1632 15839 305454;305455;305456;305457;305458;305459;305460;305461;305462;305463;305464;305465 187188;187189;187190 187188 3 PTIMGER Unmodified 802.40072 0.40072345 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.182 15.006 2 0.087831 4977 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 56.122 40.683 145270000 16185000 15865000 14949000 0 0 0 10343000 12314000 10391000 0 0 0 8821700 9583600 9032200 0 0 0 12761000 11694000 13328000 0 0 0 16354 829 15840 305466;305467;305468;305469;305470;305471;305472;305473;305474;305475;305476;305477 187191;187192 187191 2 PTLAANRPAIVR Unmodified 1277.7568 0.75680361 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 16.779 17.554 3 0.064456 6252 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 36.847 27.16 53212000 6959200 7350500 7379100 0 0 0 5352100 0 3892500 0 0 0 3845000 3293200 2837700 0 0 0 2792900 5316100 4194100 0 0 0 16355 1210 15841 305478;305479;305480;305481;305482;305483;305484;305485;305486;305487;305488 187193 187193 1 PTNPTGNVITDEELLK Unmodified 1739.8941 0.89414453 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.827 35.17 2 2.3667E-13 17011 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 160.5 155.22 209730000 38348000 29571000 27215000 0 0 0 11529000 14325000 12418000 0 0 0 7729900 8889000 11339000 0 0 0 15124000 16677000 16561000 0 0 0 16356 198 15842 305489;305490;305491;305492;305493;305494;305495;305496;305497;305498;305499;305500 187194;187195;187196;187197;187198;187199 187196 6 PTQEQYDEFK Unmodified 1283.567 0.56699673 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By matching 1 1 18.222 18.821 2 0.00045359 7049 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.06 98.652 16065000 10317000 0 5747600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16357 657 15843 305501;305502 187200 187200 1 PTQHSVK Unmodified 795.4239 0.42390173 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS 1 4.0447 4.9493 2 9.8562E-05 773 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.83 101.18 1674500 0 0 0 0 0 0 0 0 1674500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16358 337 15844 305503 187201 187201 0 PTSHENALQQR Unmodified 1279.6269 0.62691165 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 2 2 2 10.516 11.307 2;3 5.2353E-20 2487 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 241.13 229.76 655100000 0 0 2722600 0 730480 0 56962000 56250000 46983000 0 4252600 0 93906000 86849000 110190000 0 1439400 0 61827000 67270000 65724000 0 0 0 16359 1467 15845 305504;305505;305506;305507;305508;305509;305510;305511;305512;305513;305514;305515;305516;305517;305518;305519;305520;305521;305522 187202;187203;187204;187205;187206;187207;187208;187209;187210;187211 187210 10 PTSLPFEK Unmodified 917.48583 0.48583328 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.721 23.723 2 0.00087625 9951 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 119.41 86.049 357270000 38438000 37609000 37035000 0 0 0 29636000 25337000 24615000 0 0 0 29400000 25262000 26113000 0 0 0 30624000 27009000 26186000 0 0 0 16360 289 15846 305523;305524;305525;305526;305527;305528;305529;305530;305531;305532;305533;305534 187212;187213;187214;187215;187216;187217;187218;187219 187219 6 PTTVIDLTDDTPVVVR Unmodified 1739.9305 0.93053004 962 P0AFR4 yciO Uncharacterized protein YciO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.279 43.832 2 1.1333E-23 21208 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 248.32 235.96 109580000 21032000 19341000 16846000 0 0 0 0 6608000 4710900 0 0 3876100 0 8213100 5820600 0 0 0 7464600 7988500 7682500 0 0 0 16361 962 15847 305535;305536;305537;305538;305539;305540;305541;305542;305543;305544;305545 187220;187221;187222 187222 3 PVAPDANEPVK Unmodified 1135.5873 0.58733824 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.036 14.832 2 8.8339E-08 4438 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 174.02 161.74 1212800000 91100000 103670000 98896000 1912300 1492300 2276000 86996000 90191000 80027000 0 0 0 97760000 96486000 102260000 0 0 0 127400000 113130000 109410000 4133800 3006600 2652400 16362 1628 15848 305546;305547;305548;305549;305550;305551;305552;305553;305554;305555;305556;305557;305558;305559;305560;305561;305562;305563 187223;187224;187225;187226;187227;187228;187229;187230;187231;187232;187233 187233 10 PVATLDDILHR Unmodified 1248.6826 0.68263561 799 P0ADQ2 yiiD Uncharacterized protein YiiD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.785 33.319 3 1.0153E-07 15955 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.33 153.12 107490000 19504000 18880000 15204000 0 0 0 7745800 8629000 7572500 0 0 0 5296900 0 5685500 0 0 0 6215900 6672600 6083500 0 0 0 16363 799 15849 305564;305565;305566;305567;305568;305569;305570;305571;305572;305573;305574;305575 187234;187235;187236;187237;187238;187239;187240;187241;187242;187243 187239 10 PVDDLELTVR Unmodified 1155.6136 0.61355299 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.596 31.204 2 1.2626E-09 11087 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 200.54 187.58 165120000 6254700 5996100 0 0 0 0 4054200 4993000 5023000 7102700 8912100 8920100 7376200 5127500 5717400 15528000 13069000 14130000 8924100 8279500 6891900 8507200 9779600 10531000 16364 383 15850 305576;305577;305578;305579;305580;305581;305582;305583;305584;305585;305586;305587;305588;305589;305590;305591;305592;305593;305594;305595 187244;187245;187246;187247;187248;187249;187250;187251;187252;187253 187244 10 PVDILAVTGNMDEEHR Unmodified 1794.857 0.85704752 1287 P26649 glgS Glycogen synthesis protein GlgS yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 36.338 34.763 3 1.136E-08 17163 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.63 121.94 342710000 0 7170900 6262300 0 0 0 72235000 71728000 70628000 0 0 0 29443000 25708000 20670000 0 0 0 16348000 13762000 8757200 0 0 0 16365 1287 15851 305596;305597;305598;305599;305600;305601;305602;305603;305604;305605;305606 187254;187255;187256;187257;187258;187259 187254 6 PVDLHISGLEQLGATIK Unmodified 1789.9938 0.993799 311 P0A749 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 44.783 43.303 3 1.5214E-11 20924 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 155.1 153.85 303630000 29522000 23535000 21045000 0 0 0 24768000 29248000 0 0 0 0 29250000 24845000 22007000 0 0 0 36474000 35600000 27335000 0 0 0 16366 311 15852 305607;305608;305609;305610;305611;305612;305613;305614;305615;305616;305617 187260;187261;187262;187263;187264;187265;187266;187267;187268;187269;187270 187264 11 PVDLILR Unmodified 824.51199 0.51198846 1864 P76501 yfcR Uncharacterized fimbrial-like protein YfcR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.885 53.57 2 0.002439 21803 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 112.27 90.03 304020000 6793100 6305500 4739300 2914800 4433100 4334100 17308000 19747000 19053000 12908000 12909000 11842000 20074000 27422000 27052000 0 5189500 3704500 24833000 25700000 20709000 11258000 6566900 8220600 16367 1864 15853 305618;305619;305620;305621;305622;305623;305624;305625;305626;305627;305628;305629;305630;305631;305632;305633;305634;305635;305636;305637;305638;305639;305640 187271;187272;187273;187274;187275;187276;187277;187278;187279;187280;187281;187282;187283 187272 13 PVDVNTHHTLPDFIMNR Unmodified 2004.984 0.98397937 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.543 31.228 3;4 3.1287E-14 14757 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.04 156.29 4071700000 602690000 583020000 543130000 0 0 0 113810000 186010000 202610000 0 0 0 224780000 200470000 195210000 0 0 0 400310000 424110000 395510000 0 0 0 16368 1444 15854 305641;305642;305643;305644;305645;305646;305647;305648;305649;305650;305651;305652;305653;305654;305655;305656;305657;305658;305659;305660;305661;305662;305663;305664 187284;187285;187286;187287;187288;187289;187290;187291;187292;187293;187294;187295;187296;187297;187298;187299;187300;187301;187302;187303;187304;187305;187306 187290 23 PVFAICHGPQLLISADVIR Unmodified 2105.1456 0.14556539 1570 P45470 yhbO Protein YhbO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.752 47.409 3 3.155E-14 23234 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.18 122.03 155190000 27723000 28737000 24460000 0 0 0 23561000 16957000 19858000 0 0 0 2015400 2451600 1652600 0 0 0 4712400 0 3065000 0 0 0 16369 1570 15855 305665;305666;305667;305668;305669;305670;305671;305672;305673;305674;305675 187307;187308;187309;187310;187311;187312 187310 3 PVFQGVR Unmodified 801.44972 0.44972255 1095 P14176 proW Glycine betaine/L-proline transport system permease protein ProW yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 17.425 18.207 2 0.0013568 6716 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.82 84.955 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16370 1095 15856 305676;305677;305678;305679;305680 187313;187314;187315;187316;187317 187313 5 PVHTVTLLLGDK Unmodified 1291.75 0.7499869 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 28.486 27.236 2;3 9.8744E-12 11994 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 187.97 163.45 1071800000 104990000 97845000 79801000 0 0 563440 109990000 98265000 88644000 0 0 0 66256000 63165000 66729000 0 0 0 104920000 100280000 90346000 0 0 0 16371 62 15857 305681;305682;305683;305684;305685;305686;305687;305688;305689;305690;305691;305692;305693;305694;305695;305696;305697;305698;305699;305700;305701;305702;305703;305704;305705 187318;187319;187320;187321;187322;187323;187324;187325;187326;187327;187328;187329;187330;187331;187332;187333;187334;187335;187336;187337;187338;187339;187340 187335 23 PVHVLTPIASVR Unmodified 1287.7663 0.76630566 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 24.971 23.982 2;3 3.3789E-08 11059 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 162.64 158.34 3621200000 541720000 567130000 493990000 0 0 0 179350000 204990000 222720000 0 0 0 197980000 188940000 175000000 0 0 0 314310000 255680000 279380000 0 0 0 16372 1872 15858 305706;305707;305708;305709;305710;305711;305712;305713;305714;305715;305716;305717;305718;305719;305720;305721;305722;305723;305724;305725;305726;305727;305728;305729 187341;187342;187343;187344;187345;187346;187347;187348;187349;187350;187351;187352;187353;187354;187355;187356;187357;187358 187341 18 PVHWCVDCR Unmodified 1227.5277 0.52773165 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 17.279 17.961 2;3 7.9119E-05 6570 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.52 138.15 1019800000 85795000 91154000 79572000 0 0 0 115510000 100380000 102600000 0 0 0 64055000 60964000 54784000 0 0 0 90060000 94851000 80031000 0 0 0 16373 58 15859 305730;305731;305732;305733;305734;305735;305736;305737;305738;305739;305740;305741;305742;305743;305744;305745;305746;305747;305748;305749;305750;305751;305752;305753 187359;187360;187361;187362;187363;187364;187365;187366;187367;187368 187362 10 PVITLPDGSQR Unmodified 1181.6404 0.64043645 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 29.215 27.934 2;3 3.8663E-14 12926 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 206.78 198.25 4637900000 368100000 367530000 399260000 3525000 4151800 3913500 416900000 413130000 392880000 4479900 5310700 6828200 326030000 315850000 316640000 2346500 1259900 1017300 423820000 458100000 394810000 4171500 3912400 3906400 16374 445 15860 305754;305755;305756;305757;305758;305759;305760;305761;305762;305763;305764;305765;305766;305767;305768;305769;305770;305771;305772;305773;305774;305775;305776;305777;305778;305779;305780;305781;305782;305783;305784;305785;305786;305787;305788 187369;187370;187371;187372;187373;187374;187375;187376;187377;187378;187379;187380;187381;187382;187383;187384;187385;187386;187387;187388;187389;187390 187384 21 PVIVTGSQIPLAELR Unmodified 1591.9297 0.92974218 492 P0A962 ansA L-asparaginase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.075 43.66 2 7.0989E-08 21576 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.17 124.49 173570000 17262000 13790000 16986000 0 0 0 12968000 14064000 9902400 0 0 0 12699000 12352000 10726000 0 0 0 16608000 18929000 17282000 0 0 0 16375 492 15861 305789;305790;305791;305792;305793;305794;305795;305796;305797;305798;305799;305800 187391;187392;187393;187394;187395;187396;187397;187398;187399;187400 187393 4 PVLDPAR Unmodified 766.43374 0.43373813 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.88 15.67 2 0.017717 5017 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 79.454 50.116 344580000 36656000 35215000 33124000 0 0 0 31314000 30842000 31491000 0 0 0 22083000 21558000 17355000 0 0 0 27033000 29899000 28008000 0 0 0 16376 1143 15862 305801;305802;305803;305804;305805;305806;305807;305808;305809;305810;305811;305812 187401;187402;187403;187404;187405 187403 4 PVLIQTSSMGVIGGAR Unmodified 1584.8658 0.86576171 1012 P0AGE6 chrR Chromate reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 39.043 37.234 2 1.3804E-06 18578 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 131.43 120.11 58202000 0 0 0 0 0 0 13581000 11832000 10993000 0 0 0 6457200 7791700 7546500 0 0 0 0 0 0 0 0 0 16377 1012 15863 305813;305814;305815;305816;305817;305818 187406;187407 187406 2 PVLLEPIMK Unmodified 1038.6147 0.61473897 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.767 37.093 2 0.00011997 18026 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.55 133.55 579260000 53442000 44108000 37598000 0 0 0 46107000 38210000 43534000 0 0 0 41428000 43695000 42576000 0 0 0 58687000 65241000 64636000 0 0 0 16378 264 15864 305819;305820;305821;305822;305823;305824;305825;305826;305827;305828;305829;305830 187408;187409;187410;187411;187412;187413;187414;187415;187416;187417;187418;187419 187411 12 PVMIIGHQK Unmodified 1021.5743 0.57427114 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.413 15.178 2 8.9486E-05 5046 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.85 132.39 134870000 10351000 10784000 9297600 0 0 0 11843000 9653300 11586000 0 0 0 11194000 10157000 11877000 0 0 0 10729000 14802000 12591000 0 0 0 16379 651 15865 305831;305832;305833;305834;305835;305836;305837;305838;305839;305840;305841;305842 187420;187421;187422;187423;187424;187425;187426 187420 7 PVNPLEQR Unmodified 951.51378 0.51377937 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 17.966 18.62 2 0.00015532 6933 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 126.67 112.89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16380 1880 15866 305843;305844;305845;305846;305847;305848 187427;187428;187429;187430;187431;187432 187429 6 PVPALNQPGGIVEK Unmodified 1417.7929 0.79291434 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.406 27.158 2 2.1583E-06 11983 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 154.24 152.91 215640000 32490000 29740000 27500000 0 0 0 6870400 10232000 9581000 0 0 0 13712000 10071000 11845000 0 0 0 21420000 19265000 22910000 0 0 0 16381 1625 15867 305849;305850;305851;305852;305853;305854;305855;305856;305857;305858;305859;305860 187433;187434;187435;187436;187437;187438;187439;187440;187441 187441 9 PVSLGLR Unmodified 740.45447 0.45447358 641 P0AB98 atpB ATP synthase subunit a yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 21.797 21.76 2 0.00027992 8917 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 159.75 150.28 161670000 6058500 5853300 6264200 0 0 0 10156000 8058100 11916000 0 454980 0 20175000 17897000 16423000 0 0 0 23433000 19106000 15878000 0 0 0 16382 641 15868 305861;305862;305863;305864;305865;305866;305867;305868;305869;305870;305871;305872;305873 187442;187443;187444;187445;187446;187447 187443 6 PVSPTEENFANAAK Unmodified 1473.71 0.70997257 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 22.07 22.067 2 5.9101E-11 9141 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 185.18 180.28 97771000 0 0 0 0 0 0 13575000 11404000 12563000 0 0 0 13939000 8813400 9466400 0 0 0 10249000 8916200 8845300 0 0 0 16383 994 15869 305874;305875;305876;305877;305878;305879;305880;305881;305882 187448;187449;187450;187451;187452;187453 187450 6 PVSTHVLPPASPLDEPR Unmodified 1810.9577 0.95774784 1761 P75682 yagE Probable 2-keto-3-deoxy-galactonate aldolase YagE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 27.912 26.953 3 1.7637E-06 12225 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.866 85.623 27989000 9409700 11223000 7356400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16384 1761 15870 305883;305884;305885 187454;187455;187456 187456 3 PVTGGYYFAPSLDK Unmodified 1513.7453 0.74529545 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.268 36.594 2 9.3069E-15 18217 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 196.24 194.91 160580000 10896000 10170000 8256900 0 0 0 17262000 17219000 15900000 0 0 0 11918000 12825000 12762000 0 0 0 16908000 12576000 13884000 0 0 0 16385 1868 15871 305886;305887;305888;305889;305890;305891;305892;305893;305894;305895;305896;305897 187457;187458;187459;187460;187461;187462;187463;187464;187465;187466;187467;187468 187457 11 PVTQSVDPAQTLK Unmodified 1382.7405 0.74054442 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.569 22.032 2 5.5173E-24 8920 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 237.84 233.92 1233900000 159970000 147320000 137250000 0 0 0 66030000 56284000 55842000 0 0 0 94725000 84293000 96113000 0 0 0 127430000 104850000 103820000 0 0 0 16386 181 15872 305898;305899;305900;305901;305902;305903;305904;305905;305906;305907;305908;305909 187469;187470;187471;187472;187473;187474;187475;187476;187477;187478;187479;187480 187479 12 PVTVGYMYMLK Unmodified 1300.656 0.65595186 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.435 40.975 2 0.00023947 14239 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 99.442 88.576 554000000 12337000 11297000 12300000 0 0 0 0 2424700 3673800 0 0 15201000 10749000 9813200 9976900 154440000 95813000 83747000 9897300 10371000 10184000 32930000 35277000 33560000 16387 463 15873 305910;305911;305912;305913;305914;305915;305916;305917;305918;305919;305920;305921;305922;305923;305924;305925;305926;305927 187481;187482 187481 1 PVVGYIAGVTAPK Unmodified 1270.7285 0.72852317 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.316 31.876 2 4.3099E-05 15170 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.77 112.47 370070000 45235000 48528000 47441000 0 0 0 16590000 13203000 14285000 0 0 0 18379000 19003000 17218000 0 0 0 41363000 43868000 44951000 0 0 0 16388 1013 15874 305928;305929;305930;305931;305932;305933;305934;305935;305936;305937;305938;305939 187483;187484;187485;187486 187484 3 PVVIFPEGR Unmodified 1012.5706 0.57056597 1359 P31119 aas Bifunctional protein Aas;2-acylglycerophosphoethanolamine acyltransferase;Acyl-[acyl-carrier-protein] synthetase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 32.853 31.322 2 0.097989 15476 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 49.423 32.037 46736000 0 0 0 0 0 0 2216700 2363700 0 0 0 0 0 0 9609200 0 0 0 14231000 0 18315000 0 0 0 16389 1359 15875 305940;305941;305942;305943;305944 187487 187487 0 PVYDVFK Unmodified 866.4538 0.45380487 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 30.326 28.929 2 0.0051746 13942 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.74 80.895 249980000 0 6761400 0 0 0 0 20919000 18181000 19596000 0 0 0 22827000 18970000 20378000 0 0 0 42591000 40626000 39132000 0 0 0 16390 993 15876 305945;305946;305947;305948;305949;305950;305951;305952;305953;305954 187488;187489;187490;187491;187492;187493;187494;187495;187496 187488 9 PWNSTWFANTK Unmodified 1350.6357 0.63568542 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 37.554 36.041 2 0.001383 17519 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.102 74.754 30102000 7855300 8002300 7621300 0 0 0 0 0 0 0 0 0 0 0 2864900 0 0 0 3758200 0 0 0 0 0 16391 374 15877 305955;305956;305957;305958;305959 187497 187497 1 PWVGGYTGK Unmodified 963.48142 0.48141661 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.509 21.66 2 5.3784E-05 8612 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 148.04 140.33 304630000 89766000 92706000 77231000 0 0 0 4990000 5078400 0 0 0 0 5096000 7151100 6369900 0 0 0 4155600 5342900 6742400 0 0 0 16392 1217 15878 305960;305961;305962;305963;305964;305965;305966;305967;305968;305969;305970 187498;187499;187500 187500 3 PYAETMR Unmodified 866.39564 0.39563807 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.631 13.29 2 7.0296E-05 3806 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 175.94 163.56 1025400000 31879000 29036000 37233000 0 0 683290 88036000 90625000 82188000 4489200 5021200 3970200 93518000 118630000 102120000 0 0 0 118550000 100410000 105030000 4055900 4435000 5469100 16393 644 15879 305971;305972;305973;305974;305975;305976;305977;305978;305979;305980;305981;305982;305983;305984;305985;305986;305987;305988;305989 187501;187502;187503;187504;187505;187506;187507;187508;187509;187510;187511 187503 11 PYAGVHNYLK Unmodified 1160.5978 0.59784335 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.233 17.066 3 0.00013953 5656 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 109.48 101.91 588170000 39939000 30120000 23267000 0 0 0 65322000 69094000 64303000 0 0 0 44661000 39613000 36398000 0 0 0 63871000 56436000 55145000 0 0 0 16394 473 15880 305990;305991;305992;305993;305994;305995;305996;305997;305998;305999;306000;306001 187512;187513;187514;187515;187516;187517;187518;187519;187520;187521;187522 187520 11 PYHPTDVDFTHPR Unmodified 1580.7372 0.73719038 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 1 1 2 2 3 2 2 2 3 3 3 3 1 1 18.029 18.562 2;3;4 2.0914E-07 6797 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.24 145.93 1863100000 285300000 294820000 284040000 1954100 2121200 1818900 97741000 94119000 90672000 4332500 0 0 67531000 73988000 62883000 0 0 0 163820000 174890000 160060000 0 2304100 689570 16395 1302 15881 306002;306003;306004;306005;306006;306007;306008;306009;306010;306011;306012;306013;306014;306015;306016;306017;306018;306019;306020;306021;306022;306023;306024;306025;306026;306027;306028;306029;306030;306031;306032;306033;306034;306035;306036;306037;306038;306039;306040;306041 187523;187524;187525;187526;187527;187528;187529;187530;187531;187532;187533;187534;187535;187536;187537;187538;187539;187540;187541;187542;187543;187544;187545;187546;187547;187548;187549 187538 27 PYHQAYER Unmodified 1062.4883 0.4882929 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 10.509 11.325 2;3 0.0011708 2646 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 87.696 84.718 860960000 180430000 178530000 130600000 0 0 0 46174000 52281000 41212000 0 0 0 42853000 34602000 39986000 0 0 0 42911000 33435000 37955000 0 0 0 16396 1455 15882 306042;306043;306044;306045;306046;306047;306048;306049;306050;306051;306052;306053;306054;306055;306056;306057;306058;306059;306060;306061;306062;306063;306064;306065 187550;187551;187552;187553;187554;187555;187556 187550 6 PYLFCGDTLFSGGCGR Unmodified 1805.7865 0.78652511 708 P0AC84 gloB Hydroxyacylglutathione hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.793 47.461 2 5.1439E-19 22979 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 199.7 199.7 138000000 25738000 23473000 19463000 0 0 0 11990000 13575000 13089000 0 0 0 3973400 4262500 3454500 0 0 0 6199000 5562700 7221800 0 0 0 16397 708 15883 306066;306067;306068;306069;306070;306071;306072;306073;306074;306075;306076;306077 187557;187558;187559;187560;187561;187562;187563;187564 187563 8 PYNADKPNK Unmodified 1045.5193 0.51925868 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 1 By MS/MS By MS/MS 1 1 5.2269 6.0283 2 0.0049805 1268 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.909 81.913 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16398 1421 15884 306078;306079 187565;187566 187565 2 PYNEGEQVVIGGNER Unmodified 1659.7853 0.78526278 1206 P23331 tdk Thymidine kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.342 24.027 3 0.16172 8596 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 9.788 9.788 88711000 0 0 0 3491900 4171200 4889800 0 0 0 23297000 18408000 19232000 0 0 0 0 0 0 0 0 0 5349000 4552400 5318700 16399 1206 15885 306080;306081;306082;306083;306084;306085;306086;306087;306088 187567 187567 1 PYNPNAR Unmodified 830.4035 0.40350064 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.631 11.464 2 0.0022284 2710 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116 76.237 1838300000 586130000 583610000 521880000 0 0 0 0 0 21663000 0 0 0 12819000 11202000 12505000 0 0 0 32537000 30571000 25388000 0 0 0 16400 1219 15886 306089;306090;306091;306092;306093;306094;306095;306096;306097;306098 187568;187569;187570 187569 3 PYQAGTWGPVASVAMITR Unmodified 1903.9615 0.96145301 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 48.747 47.446 2 0.00018361 23232 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 73.887 68.502 42878000 5013800 3995200 0 0 0 0 0 4806900 5059200 0 0 0 3622200 3811300 3065300 0 0 0 4267000 4516700 4720100 0 0 0 16401 702 15887 306099;306100;306101;306102;306103;306104;306105;306106;306107;306108 187571;187572 187572 0 PYSAEDVVK Unmodified 1006.4971 0.49712625 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 18.021 18.618 2 0.00033393 6619 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.89 102.41 1250700000 0 0 0 0 0 0 226900000 191560000 213690000 0 0 0 72581000 76066000 63867000 0 0 0 129420000 135960000 140670000 0 0 0 16402 517 15888 306109;306110;306111;306112;306113;306114;306115;306116;306117 187573;187574;187575;187576;187577;187578;187579;187580 187578 8 PYTAPVAATAPVAASGPK Unmodified 1667.8883 0.88827129 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 26.934 25.765 2 1.8838E-13 11797 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.87 133.26 132140000 10130000 0 6698900 0 0 0 11910000 11098000 10852000 0 0 0 11451000 11562000 10533000 0 0 0 16209000 17417000 14279000 0 0 0 16403 1167 15889 306118;306119;306120;306121;306122;306123;306124;306125;306126;306127;306128 187581;187582;187583;187584;187585;187586;187587;187588 187584 8 PYTLDYVR Unmodified 1025.5182 0.51819605 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 28.015 26.756 2 0.039273 12239 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 66.682 61.023 114850000 13561000 0 12303000 0 0 0 12013000 11526000 14930000 0 0 0 0 0 0 0 0 0 15344000 18565000 16606000 0 0 0 16404 651 15890 306129;306130;306131;306132;306133;306134;306135;306136 187589;187590;187591;187592 187591 0 PYVMLFDLHGMDER Unmodified 1721.7905 0.79054786 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.61 46.149 3 1.0788E-05 22525 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 93.823 89.58 244110000 11832000 10482000 10372000 0 0 0 18491000 20765000 18214000 0 1848500 0 23719000 21456000 19929000 0 0 0 28685000 27828000 28032000 0 1468800 985740 16405 1426 15891 306137;306138;306139;306140;306141;306142;306143;306144;306145;306146;306147;306148;306149;306150;306151 187593;187594;187595;187596;187597;187598 187596 5 QAAAQAAAGDSLDK Unmodified 1315.6368 0.63680763 39 P00803 lepB Signal peptidase I yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.835 13.551 2 7.1465E-08 4015 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.45 65.521 143680000 4830100 0 4751800 1101100 1144600 0 8694200 13208000 12468000 7272800 4567200 5081300 12324000 9274200 11197000 0 0 0 15363000 16971000 11695000 3740600 0 0 16406 39 15892 306152;306153;306154;306155;306156;306157;306158;306159;306160;306161;306162;306163;306164;306165;306166;306167;306168 187599 187599 1 QAADHPVIATYPEGLYLK Unmodified 1985.0258 0.025827405 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.764 35.152 3 3.2219E-05 17255 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 82.865 77.864 244480000 24726000 0 0 861660 0 0 18842000 19548000 19182000 5324500 5820200 5253900 14996000 14250000 14970000 7816100 4681800 5348300 26437000 22351000 22694000 4560100 3382300 3429600 16407 1787 15893 306169;306170;306171;306172;306173;306174;306175;306176;306177;306178;306179;306180;306181;306182;306183;306184;306185;306186;306187;306188 187600;187601;187602 187602 3 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR Unmodified 4022.0457 0.045734584 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 53.847 52.407 3;4 2.5185E-86 25660 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 274.76 270.98 922800000 102590000 81370000 79974000 0 0 0 68163000 69691000 66630000 0 0 0 73355000 60878000 69820000 0 0 0 86333000 78494000 85503000 0 0 0 16408 1903 15894 306189;306190;306191;306192;306193;306194;306195;306196;306197;306198;306199;306200;306201;306202;306203;306204;306205;306206;306207;306208;306209;306210;306211;306212 187603;187604;187605;187606;187607;187608;187609 187605 7 QAAFSDTIFVVGTR Unmodified 1510.778 0.77799256 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 2 1 1 1 1 44.766 43.294 2;3 6.0958E-11 21042 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 167.6 161.36 411770000 99984000 88853000 90880000 0 0 0 16579000 16294000 16387000 0 0 0 9709800 9996100 8665600 0 0 0 16210000 19128000 19083000 0 0 0 16409 1501 15895 306213;306214;306215;306216;306217;306218;306219;306220;306221;306222;306223;306224;306225;306226;306227;306228 187610;187611;187612;187613 187611 4 QAATHAR Unmodified 753.38818 0.38818493 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 3.9042 4.7405 2 0.0089075 819 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.35 73.937 57383000 11855000 12796000 9596400 0 0 0 0 0 0 0 0 0 1921600 1347600 1570400 0 0 0 5774500 6333300 6188900 0 0 0 16410 1326 15896 306229;306230;306231;306232;306233;306234;306235;306236;306237 187614;187615;187616;187617;187618;187619;187620 187619 7 QAAVLIPIVR Unmodified 1078.6863 0.68626443 1562 P43337 nudL Uncharacterized Nudix hydrolase NudL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 39.491 37.618 2 0.0016832 18302 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.313 79.567 29933000 8376900 5743700 7614300 0 0 672190 2049600 0 2230100 873900 0 0 0 0 0 0 0 0 2372100 0 0 0 0 0 16411 1562 15897 306238;306239;306240;306241;306242;306243;306244;306245 187621;187622;187623 187621 3 QADGTMEPLPKPSVDTGMGLER Unmodified 2328.109 0.10898146 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 34.098 32.593 2;3 1.1724E-09 15437 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 159.14 154.59 296640000 10004000 8553300 6655900 1098600 1440100 2179000 80062000 79289000 69802000 0 0 0 7154200 6477500 6557700 0 0 0 4792400 5175200 7403400 0 0 0 16412 59 15898 306246;306247;306248;306249;306250;306251;306252;306253;306254;306255;306256;306257;306258;306259;306260;306261 187624;187625;187626;187627 187627 4 QADGVVIVTPEYNYSVPGGLK Unmodified 2205.1317 0.13174904 1012 P0AGE6 chrR Chromate reductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.628 44.192 2;3 6.5883E-22 21828 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 238.06 236.74 617850000 41212000 53074000 47260000 0 0 0 72528000 63435000 67192000 0 0 0 45670000 42233000 40216000 0 0 0 47737000 49963000 47327000 0 0 0 16413 1012 15899 306262;306263;306264;306265;306266;306267;306268;306269;306270;306271;306272;306273;306274;306275;306276;306277;306278;306279;306280;306281;306282;306283;306284;306285 187628;187629;187630;187631;187632;187633;187634;187635;187636;187637;187638;187639;187640;187641;187642;187643;187644 187629 17 QADLMVVAGTCFTK Unmodified 1539.7425 0.74253503 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 40.613 38.548 2 2.9577E-26 15043 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 226.04 223.52 84427000 0 0 0 3773300 4053700 3930000 3090400 0 0 13875000 11868000 11281000 0 2031600 0 0 0 0 0 0 0 10210000 10415000 9900100 16414 927 15900 306286;306287;306288;306289;306290;306291;306292;306293;306294;306295;306296 187645;187646;187647;187648;187649;187650;187651;187652 187649 8 QADTNQEQAK Unmodified 1131.5156 0.51562986 1732 P69428 tatA Sec-independent protein translocase protein TatA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.0547 5.943 2 1.5768E-05 946 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.44 146.45 349630000 22242000 25785000 18166000 540640 462560 486130 37093000 33970000 38218000 0 0 0 26869000 22894000 0 0 0 0 45499000 41617000 35793000 0 0 0 16415 1732 15901 306297;306298;306299;306300;306301;306302;306303;306304;306305;306306;306307;306308;306309;306310;306311 187653;187654;187655;187656;187657;187658;187659;187660;187661;187662 187653 10 QADYGDEAALTSALQGVEK Unmodified 1964.9327 0.93271488 1523 P39315 qorB Quinone oxidoreductase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 43.583 41.982 2 1.7919E-09 20346 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.31 113.74 38258000 0 0 0 0 0 0 5819500 7037800 6317700 0 0 0 0 3325800 3364800 0 0 0 3517700 3756400 5118700 0 0 0 16416 1523 15902 306312;306313;306314;306315;306316;306317;306318;306319 187663 187663 1 QAEDESDREVEGGR Unmodified 1575.6761 0.67610626 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.804 11.436 3 4.4232E-07 2194 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 116.51 116.51 606890000 69543000 52998000 71843000 0 0 0 0 40125000 64812000 0 0 0 49296000 38070000 28441000 17464000 29820000 28123000 45930000 33505000 36923000 0 0 0 16417 297 15903 306320;306321;306322;306323;306324;306325;306326;306327;306328;306329;306330;306331;306332;306333 187664;187665;187666;187667;187668;187669 187665 6 QAEFQILYGEGINFYGELVDLGVK Unmodified 2701.3639 0.36393382 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.924 54.613 3 7.8247E-22 21976 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 158.37 152.15 221270000 16908000 0 0 6571600 6943100 8505200 140020 107590 0 48562000 46352000 37371000 0 0 0 13454000 0 0 0 0 0 14341000 11379000 10632000 16418 343 15904 306334;306335;306336;306337;306338;306339;306340;306341;306342;306343;306344;306345;306346 187670;187671;187672 187672 3 QAEGDFFVCTPEEGSK Unmodified 1799.7672 0.76722946 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.748 32.071 2 1.6407E-24 15542 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 222.79 222.79 276010000 12219000 13524000 9453600 0 2418300 2850900 29677000 27896000 27290000 19136000 16005000 15048000 9165000 9928800 10695000 0 0 0 19101000 17522000 17166000 6396200 5385200 5132500 16419 122 15905 306347;306348;306349;306350;306351;306352;306353;306354;306355;306356;306357;306358;306359;306360;306361;306362;306363;306364;306365;306366;306367 187673;187674;187675;187676;187677;187678;187679;187680;187681;187682;187683;187684;187685;187686;187687;187688;187689;187690;187691;187692 187677 20 QAETEIADFIAQK Unmodified 1462.7304 0.73037367 710 P0AC92 gnsA Protein GnsA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 1 1 1 39.296 37.688 2;3 1.7856E-07 18741 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 190.57 178.52 640670000 49376000 41587000 38970000 0 0 0 45086000 46012000 45697000 0 0 0 63394000 61157000 56827000 0 0 0 61075000 65003000 66481000 0 0 0 16420 710 15906 306368;306369;306370;306371;306372;306373;306374;306375;306376;306377;306378;306379;306380;306381;306382;306383;306384 187693;187694;187695;187696;187697;187698;187699;187700;187701;187702;187703;187704;187705;187706 187693 14 QAFDDEELK Unmodified 1093.4928 0.49276916 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 20.608 21.118 2 0.0011272 8339 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 92.491 86.388 365570000 79284000 0 78764000 0 0 0 0 0 0 0 0 0 37386000 37671000 33393000 0 0 0 0 45069000 54000000 0 0 0 16421 52 15907 306385;306386;306387;306388;306389;306390;306391 187707;187708;187709;187710;187711;187712;187713 187708 7 QAFHDASFMLR Unmodified 1321.6237 0.62374052 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.519 27.271 3 0.00080097 12434 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 64.439 36.426 425550000 73426000 64812000 56051000 0 0 0 15077000 14363000 19871000 0 0 0 24854000 23754000 25467000 0 0 0 36968000 37446000 33462000 0 0 0 16422 696 15908 306392;306393;306394;306395;306396;306397;306398;306399;306400;306401;306402;306403 187714;187715;187716;187717;187718;187719;187720;187721;187722 187718 9 QAFHSAHVQPVFAVLDPVYTYTLPPR Unmodified 2952.5286 0.52864816 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.47 47.147 4 1.3994E-15 23336 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.29 140.3 169660000 13561000 8434200 8467600 0 0 0 22446000 21402000 16983000 0 0 0 12032000 9786200 11808000 0 0 0 13856000 16469000 14415000 0 0 0 16423 1959 15909 306404;306405;306406;306407;306408;306409;306410;306411;306412;306413;306414;306415 187723;187724;187725;187726;187727 187723 5 QAFIDSFR Unmodified 982.48723 0.48723027 153 P07023 tyrA T-protein;Chorismate mutase;Prephenate dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 2 1 1 32.845 31.42 2 0.023063 14033 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 78.728 70.135 45569000 0 0 5868600 0 1621400 2050900 0 5899300 6081700 0 0 0 0 3792000 9757100 0 0 0 0 5235300 5263100 0 0 0 16424 153 15910 306416;306417;306418;306419;306420;306421;306422;306423;306424;306425 187728;187729 187729 0 QAFLDFFHSK Unmodified 1238.6084 0.60840804 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 41.019 39.283 2;3 0.0014198 19439 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 65.278 61.956 2130000000 162980000 145210000 149470000 1641000 1658300 1587300 225030000 198180000 178110000 5067500 5042200 4172300 128730000 132260000 127180000 3095900 0 0 218640000 208230000 224220000 3813700 2229600 3442000 16425 59 15911 306426;306427;306428;306429;306430;306431;306432;306433;306434;306435;306436;306437;306438;306439;306440;306441;306442;306443;306444;306445;306446;306447;306448;306449;306450;306451;306452;306453;306454;306455;306456;306457;306458;306459 187730;187731;187732;187733;187734;187735;187736;187737;187738;187739;187740;187741;187742;187743;187744;187745;187746 187733 15 QAFNKPGELNIDR Unmodified 1500.7685 0.76849051 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 1 1 1 20.643 20.876 2;3 9.7359E-08 8374 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 156.58 119.39 1250800000 89243000 73855000 75062000 0 0 0 99131000 95899000 92196000 8038000 6899500 3587700 105690000 104800000 87676000 9822800 6286100 7577800 128260000 116810000 118910000 6844600 8001900 6166000 16426 124 15912 306460;306461;306462;306463;306464;306465;306466;306467;306468;306469;306470;306471;306472;306473;306474;306475;306476;306477;306478;306479;306480;306481;306482;306483;306484;306485;306486;306487;306488;306489;306490;306491;306492;306493 187747;187748;187749;187750;187751;187752;187753;187754;187755;187756;187757;187758;187759;187760;187761;187762;187763;187764;187765;187766;187767;187768;187769;187770;187771;187772;187773;187774;187775;187776;187777 187761 30 QAFTVSESNKG Unmodified 1166.5568 0.5567664 683 P0ABU9 tolQ Protein TolQ yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.577 15.136 2 0.00012603 4649 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 119.75 119.75 102250000 0 2949300 2455100 1564000 1521700 1652600 0 5032800 7632400 5060900 5288500 5423400 6322600 4783300 5802400 1541700 0 1198400 10819000 13986000 9722600 3930500 4364300 1199500 16427 683 15913 306494;306495;306496;306497;306498;306499;306500;306501;306502;306503;306504;306505;306506;306507;306508;306509;306510;306511;306512;306513;306514 187778;187779;187780;187781;187782 187780 5 QAGATGVVTALHHIPNGEVWSVEEILK Unmodified 2854.4977 0.49774196 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 48.053 46.676 4 0.13676 21788 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 22.081 20.025 152160000 23168000 24713000 21634000 0 0 0 26639000 0 21820000 0 0 0 8068700 13651000 12464000 0 0 0 0 0 0 0 0 0 16428 1244 15914 306515;306516;306517;306518;306519;306520;306521;306522 187783;187784 187784 2 QAGELQEK Unmodified 901.45051 0.45051041 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 1 2 1 2 2 2 1 1 1 2 2 1 1 1 1 10.833 11.469 2 0.00057683 2261 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 132.08 85.09 2761000000 310310000 301200000 234630000 0 17110000 16462000 115040000 115070000 113960000 48065000 30021000 31565000 237450000 227750000 139870000 36727000 31818000 30067000 217050000 263280000 185350000 20558000 18931000 18731000 16429 376 15915 306523;306524;306525;306526;306527;306528;306529;306530;306531;306532;306533;306534;306535;306536;306537;306538;306539;306540;306541;306542;306543;306544;306545;306546;306547;306548;306549;306550;306551;306552;306553;306554;306555;306556;306557 187785;187786;187787;187788;187789;187790;187791;187792;187793;187794;187795;187796;187797;187798;187799;187800;187801;187802;187803;187804;187805;187806;187807;187808 187790 24 QAGIALAGGHSIDAPEPIFGLAVTGIVPTER Unmodified 3056.6295 0.62948441 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.827 52.409 3 3.8971E-43 25954 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 217.26 216.24 982120000 52746000 34444000 31858000 5243900 4903000 9510500 100620000 116970000 111120000 12196000 20380000 13607000 72352000 66252000 58223000 0 0 0 81488000 90169000 88379000 0 7825400 3831100 16430 1119 15916 306558;306559;306560;306561;306562;306563;306564;306565;306566;306567;306568;306569;306570;306571;306572;306573;306574;306575;306576;306577 187809;187810;187811;187812;187813;187814;187815;187816;187817;187818;187819 187811 11 QAGIAMPQVAIYHAPDINAFATGAR Unmodified 2582.3064 0.30637614 1228 P23894 htpX Protease HtpX yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 47.795 46.362 3 6.7726E-07 22593 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.42 98.731 203370000 10147000 10907000 8454100 0 0 0 20756000 18245000 19170000 0 0 0 17553000 14211000 12331000 0 0 0 22878000 21325000 23362000 4033000 0 0 16431 1228 15917 306578;306579;306580;306581;306582;306583;306584;306585;306586;306587;306588;306589;306590 187820;187821;187822;187823;187824;187825;187826;187827;187828;187829;187830 187824 11 QAGIDLLPVGDFAWYDHVLTTSLLLGNVPAR Unmodified 3350.7663 0.76631225 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.792 54.318 3 1.811E-24 27099 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.75 164.77 347720000 24657000 26567000 19785000 0 0 0 88560000 60026000 53183000 0 0 0 10910000 7299900 8035500 0 0 0 15408000 16307000 16980000 0 0 0 16432 1265 15918 306591;306592;306593;306594;306595;306596;306597;306598;306599;306600;306601;306602 187831;187832;187833 187831 3 QAGLELFSEENLQILSEK Unmodified 2047.0474 0.047350708 1613 P56258 wecF TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 33.136 31.492 3 0.16134 15407 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 8.8192 3.8173 51973000 0 0 0 0 0 0 10675000 8060800 8068800 0 0 0 0 0 0 0 0 0 7121900 9765800 8280900 0 0 0 16433 1613 15919 306603;306604;306605;306606;306607;306608 187834 187834 1 QAGLGGEIICYVA Unmodified 1349.6649 0.66493664 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.773 50.629 2 1.2046E-05 20274 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 116.3 114.66 1135400000 143660000 132360000 120900000 11942000 10313000 10677000 52510000 33914000 39338000 17321000 17348000 20577000 65206000 62977000 68572000 9649700 7997800 9056700 87189000 87251000 86978000 13084000 12924000 13635000 16434 377 15920 306609;306610;306611;306612;306613;306614;306615;306616;306617;306618;306619;306620;306621;306622;306623;306624;306625;306626;306627;306628;306629;306630;306631;306632 187835;187836;187837;187838;187839;187840;187841;187842;187843;187844;187845;187846;187847;187848;187849;187850;187851;187852;187853;187854;187855;187856;187857 187838 18 QAGMSFSQLVVR Unmodified 1321.6813 0.6812554 171 P07862 ddlB D-alanine--D-alanine ligase B yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.166 36.492 2 4.2956E-05 17745 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 135.43 126.57 179000000 19347000 18911000 17508000 0 0 0 17486000 13867000 13516000 0 0 0 11779000 11026000 10056000 0 0 0 16210000 16041000 13252000 0 0 0 16435 171 15921 306633;306634;306635;306636;306637;306638;306639;306640;306641;306642;306643;306644 187858 187858 1 QAGTPIDVVWPK Unmodified 1309.703 0.7030367 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 40.482 38.829 2 0.00090194 18900 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 78.759 65.485 364790000 32937000 35366000 28165000 0 328150 0 20378000 18520000 19890000 0 0 0 33648000 37883000 34677000 0 0 0 34728000 34231000 34038000 0 0 0 16436 951 15922 306645;306646;306647;306648;306649;306650;306651;306652;306653;306654;306655;306656;306657;306658 187859;187860;187861;187862;187863;187864;187865;187866 187861 7 QAGYDASVSHPK Unmodified 1258.5942 0.59421454 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 1 2 1 1 2 2 2 2 2 2 11.282 12.062 2;3 0.017429 3082 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 39.394 36.054 1374100000 168510000 138000000 142560000 0 0 0 216290000 165150000 186580000 3435100 1692800 0 61060000 65019000 46143000 0 0 0 59114000 63904000 56657000 0 0 0 16437 1980 15923 306659;306660;306661;306662;306663;306664;306665;306666;306667;306668;306669;306670;306671;306672;306673;306674;306675;306676;306677;306678;306679;306680;306681;306682;306683 187867;187868;187869;187870;187871;187872 187868 6 QAGYTVVTTSSEQGKPLFK Unmodified 2040.0528 0.052770437 1022 P0AGJ5 yfiF Uncharacterized tRNA/rRNA methyltransferase YfiF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 26.577 25.524 3 0.00048876 11404 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 65.175 61.937 53882000 13489000 14319000 13593000 1541300 0 0 0 0 0 0 0 1053600 0 0 0 0 0 0 0 7245200 2640700 0 0 0 16438 1022 15924 306684;306685;306686;306687;306688;306689;306690 187873;187874;187875 187874 3 QAHWNMR Unmodified 941.429 0.42900388 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 12.201 12.798 2 0.0068195 3037 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 93.885 83.193 324430000 85213000 98258000 89864000 0 2312800 0 15719000 17208000 0 5609000 5285700 4956500 0 0 0 0 0 0 0 0 0 0 0 0 16439 677 15925 306691;306692;306693;306694;306695;306696;306697;306698;306699 187876;187877;187878;187879 187877 4 QAIAMPS Unmodified 716.35271 0.35271062 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 25.652 24.748 1;2 0.038114 10985 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 77.748 77.748 426990000 156560000 137160000 133260000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16440 1305 15926 306700;306701;306702;306703;306704;306705 187880;187881;187882;187883 187881 4 QAIANAR Unmodified 742.40859 0.40858602 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.425 11.256 2 0.014935 2489 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 82.263 67.681 1113300000 132550000 93714000 16871000 1505200 0 0 141470000 122960000 137760000 0 0 0 129550000 110450000 11083000 0 0 0 18909000 8003100 188510000 0 0 0 16441 1890 15927 306706;306707;306708;306709;306710;306711;306712;306713;306714;306715;306716;306717;306718 187884;187885 187884 2 QAIANSFAR Unmodified 976.50903 0.50902834 765 P0AD24 yejL UPF0352 protein YejL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 17.683 17.846 2 5.653E-05 6684 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.34 137.59 184130000 0 0 0 0 0 0 87380000 82723000 0 5801100 0 0 0 0 0 0 0 0 0 0 0 4258400 0 3970700 16442 765 15928 306719;306720;306721;306722;306723;306724;306725;306726 187886;187887;187888;187889;187890;187891;187892 187887 6 QAIECAVAR Unmodified 1016.5073 0.50731378 736 P0ACM2 rspR HTH-type transcriptional repressor RspR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.632 15.21 2 0.0010569 4690 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.302 83.888 83022000 10158000 10320000 9879600 0 591880 688390 6837000 6970200 0 2474900 1612200 1098400 7635600 5856200 6108500 0 0 0 7200200 0 0 1763400 1841100 1987200 16443 736 15929 306727;306728;306729;306730;306731;306732;306733;306734;306735;306736;306737;306738;306739;306740;306741;306742;306743 187893;187894;187895;187896;187897 187896 4 QAIEHIK Unmodified 837.47085 0.47085192 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 10.784 11.578 2 0.0082181 2798 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.046 17.026 1391400000 468840000 415400000 449950000 0 0 0 0 0 19790000 0 0 0 0 9547100 0 0 0 0 14969000 0 12868000 0 0 0 16444 921 15930 306744;306745;306746;306747;306748;306749;306750 187898;187899;187900;187901;187902;187903 187902 6 QAIFATPAFQVDGK Unmodified 1491.7722 0.7721789 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 41.766 39.648 2 8.1282E-08 15759 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 170.89 168.27 76328000 0 0 0 5417500 5518000 5154400 0 0 0 13304000 11083000 11983000 0 0 0 0 0 0 0 0 0 7311100 8639600 7917200 16445 819 15931 306751;306752;306753;306754;306755;306756;306757;306758;306759 187904;187905;187906;187907;187908;187909;187910;187911;187912 187906 9 QAIHPGDDPQPLIER Unmodified 1684.8533 0.85328277 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 21.827 21.842 3 1.8439E-07 8886 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.73 124.69 135820000 36307000 33534000 21434000 0 0 0 11273000 7197700 7939900 0 0 0 3687900 3689600 0 0 0 0 4936400 0 5819100 0 0 0 16446 1814 15932 306760;306761;306762;306763;306764;306765;306766;306767;306768;306769 187913;187914;187915;187916;187917 187915 5 QAILAFK Unmodified 789.47487 0.47487467 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.175 26.195 2 0.051776 11460 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 62.714 40.817 165230000 16249000 17626000 14170000 0 0 0 12722000 10335000 10897000 0 0 0 11557000 10634000 10726000 3470900 2375600 0 15012000 15220000 14236000 0 0 0 16447 433 15933 306770;306771;306772;306773;306774;306775;306776;306777;306778;306779;306780;306781;306782;306783 187918;187919;187920;187921;187922;187923;187924 187922 7 QAIPEQTTFEQMVAR Unmodified 1747.8563 0.85631924 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 38.986 37.449 2 1.6616E-08 18194 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.71 132.16 83012000 3769000 0 0 0 0 0 0 0 0 0 0 0 7059300 6011100 5302600 0 0 0 18978000 18862000 23029000 0 0 0 16448 865 15934 306784;306785;306786;306787;306788;306789;306790 187925;187926;187927 187925 3 QAITSAGTGCMAALDAER Unmodified 1821.8349 0.83493187 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 2 2 1 2 1 2 2 2 29.844 28.492 2;3 3.1513E-17 13317 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.04 164.15 340870000 14325000 20205000 9958500 0 0 0 30074000 35628000 31643000 0 0 0 7431300 42257000 7853400 0 0 0 45435000 54597000 41464000 0 0 0 16449 543 15935 306791;306792;306793;306794;306795;306796;306797;306798;306799;306800;306801;306802;306803;306804;306805;306806;306807;306808;306809;306810 187928;187929;187930;187931;187932 187930 3 QAIVAEVSEVAK Unmodified 1242.682 0.68196691 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.124 27.817 2 2.337E-05 13257 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.09 100.83 6859700000 770970000 774920000 722500000 58144000 54992000 60793000 276070000 303900000 292140000 80766000 90764000 84631000 346120000 320330000 359270000 59008000 50109000 49231000 635700000 621680000 566490000 94975000 95925000 90247000 16450 349 15936 306811;306812;306813;306814;306815;306816;306817;306818;306819;306820;306821;306822;306823;306824;306825;306826;306827;306828;306829;306830;306831;306832;306833;306834 187933;187934;187935;187936;187937;187938;187939;187940;187941;187942;187943;187944;187945;187946;187947;187948;187949;187950;187951;187952;187953 187937 20 QAIVAVR Unmodified 755.46537 0.46537261 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.916 15.736 2 0.0046795 4961 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 102.81 47.349 889430000 99845000 113270000 98875000 674440 0 709020 0 74652000 69156000 0 0 0 77485000 0 59166000 0 0 0 98151000 95501000 101940000 0 0 0 16451 158 15937 306835;306836;306837;306838;306839;306840;306841;306842;306843;306844;306845;306846;306847 187954;187955;187956;187957;187958;187959 187959 6 QAIVEQER Unmodified 971.50361 0.50360861 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.047 12.675 2 0.00085144 3506 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.46 98.71 761060000 38951000 35975000 30043000 0 0 0 201220000 208930000 188600000 1122900 801550 894780 15297000 0 0 0 0 0 21043000 18172000 0 0 0 0 16452 1265 15938 306848;306849;306850;306851;306852;306853;306854;306855;306856;306857;306858;306859 187960 187960 1 QALAILQGLK Unmodified 1053.6546 0.65462995 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.041 38.282 2 6.5476E-05 18588 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 113.41 106.26 1465200000 188310000 0 165870000 0 0 0 223350000 180500000 206130000 0 0 0 132330000 0 137620000 0 0 0 231110000 0 0 0 0 0 16453 1132 15939 306860;306861;306862;306863;306864;306865;306866;306867;306868;306869;306870;306871 187961;187962;187963;187964;187965;187966;187967;187968;187969;187970;187971;187972;187973 187965 13 QALDAAGFK Unmodified 919.47633 0.47633123 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.443 20.857 2 0.00069069 8424 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.74 78.289 1210100000 103240000 102040000 86996000 0 0 0 97346000 95454000 95504000 0 0 0 100710000 88814000 95709000 0 0 0 113550000 118360000 112400000 0 0 0 16454 715 15940 306872;306873;306874;306875;306876;306877;306878;306879;306880;306881;306882;306883 187974;187975;187976;187977;187978;187979;187980;187981;187982;187983 187975 10 QALDDGELEFLEGR Unmodified 1590.7526 0.75256567 1693 P64599 yhbT Uncharacterized protein YhbT yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 46.898 45.329 2 3.837E-06 22081 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 117.98 112.13 37406000 0 0 0 0 0 0 0 0 0 1029000 1134300 0 0 5348000 5694400 0 0 0 7864400 7414200 8921900 0 0 0 16455 1693 15941 306884;306885;306886;306887;306888;306889;306890 187984;187985 187985 1 QALDMGLVNTVVPLADLEK Unmodified 2025.0816 0.081627725 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 54.676 53.256 2;3 9.7129E-81 26148 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 317.77 317.77 1372700000 98013000 81299000 79855000 9743800 6170400 7984300 117660000 111020000 99473000 0 0 0 106000000 126010000 120750000 0 0 0 127090000 104930000 106140000 27787000 25188000 17599000 16456 679 15942 306891;306892;306893;306894;306895;306896;306897;306898;306899;306900;306901;306902;306903;306904;306905;306906;306907;306908;306909;306910;306911;306912;306913;306914;306915;306916;306917;306918;306919;306920;306921;306922;306923;306924 187986;187987;187988;187989;187990;187991;187992;187993;187994;187995;187996;187997;187998;187999;188000;188001;188002;188003;188004 187993 19 QALDMGLVNTVVPLADLEKETVR Unmodified 2510.3414 0.34142424 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 2 1 2 53.41 52.243 2;3 2.7202E-35 20837 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 203.64 197.23 421450000 0 0 0 44817000 45304000 49374000 0 0 0 3852500 2909400 0 0 0 0 0 4339600 4929700 0 0 0 90624000 87336000 87963000 16457 679 15943 306925;306926;306927;306928;306929;306930;306931;306932;306933;306934;306935;306936;306937;306938 188005;188006;188007;188008;188009;188010;188011 188005 7 QALEDSVK Unmodified 888.45526 0.45526144 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 12.907 13.631 2 0.011249 4049 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.072 49.367 565650000 56804000 48032000 52895000 0 0 965190 127410000 140450000 126700000 3372700 0 0 0 9021400 0 0 0 0 0 0 0 0 0 0 16458 1191 15944 306939;306940;306941;306942;306943;306944;306945;306946;306947 188012;188013;188014 188013 3 QALELPR Unmodified 825.47085 0.47085192 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 22.443 22.059 2 0.0023307 6975 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 114.19 34.732 6762000000 464090000 479620000 443030000 6233100 8061400 8015600 483890000 475940000 463930000 10866000 10880000 12661000 600220000 482070000 534760000 9622800 6542700 7109100 802550000 754710000 666510000 11599000 8448200 10642000 16459 396 15945 306948;306949;306950;306951;306952;306953;306954;306955;306956;306957;306958;306959;306960;306961;306962;306963;306964;306965;306966;306967;306968;306969;306970;306971;306972;306973;306974;306975;306976;306977;306978;306979 188015;188016;188017;188018;188019;188020;188021;188022;188023;188024;188025;188026;188027;188028;188029;188030;188031;188032;188033;188034;188035;188036;188037;188038 188015 24 QALELVR Unmodified 827.4865 0.48650199 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 21.993 21.921 2 0.0014353 8947 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.05 61.652 1292300000 194100000 186310000 199720000 1117100 1169700 623130 87467000 90023000 71078000 1417300 0 985060 59401000 51890000 54781000 0 0 0 90434000 95935000 105890000 0 0 0 16460 1872 15946 306980;306981;306982;306983;306984;306985;306986;306987;306988;306989;306990;306991;306992;306993;306994;306995;306996;306997;306998 188039;188040;188041;188042;188043;188044;188045;188046;188047;188048;188049;188050 188045 12 QALENVSTWVR Unmodified 1301.6728 0.67279921 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.341 32.576 2 0.00013393 12995 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 135.43 131.13 135490000 0 0 0 3551200 3469000 3010700 0 0 20622000 7786900 5668800 6763500 17741000 11880000 14310000 0 0 0 0 0 28504000 4393400 4455700 3334500 16461 201 15947 306999;307000;307001;307002;307003;307004;307005;307006;307007;307008;307009;307010;307011;307012 188051;188052;188053;188054;188055;188056 188051 4 QALIDANLR Unmodified 1012.5665 0.56654322 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.141 24.98 2 0.00028218 11227 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.41 41.666 331020000 76094000 77318000 59657000 590990 648700 746270 13238000 15689000 16215000 0 0 0 10594000 11968000 8355200 0 0 0 11698000 13972000 14233000 0 0 0 16462 1107 15948 307013;307014;307015;307016;307017;307018;307019;307020;307021;307022;307023;307024;307025;307026;307027 188057;188058;188059 188057 3 QALILNLPGQPK Unmodified 1290.766 0.76597131 901 P0AF03 mog Molybdopterin adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.927 37.254 2 1.5523E-08 17895 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.21 170.06 399670000 43459000 41080000 37777000 0 0 0 22754000 28800000 27159000 0 0 0 35311000 26970000 26820000 0 0 0 39473000 37542000 32522000 0 0 0 16463 901 15949 307028;307029;307030;307031;307032;307033;307034;307035;307036;307037;307038;307039 188060;188061;188062;188063;188064;188065;188066;188067;188068;188069;188070 188067 11 QALLALVLNR Unmodified 1109.6921 0.69207809 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1 1 1 1 1 2 1 2 1 2 47.882 46.508 2;3 1.3307E-06 22559 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 199.07 190.65 3736100000 1114400000 1124600000 1153000000 6114000 4165100 5372000 4893700 4942800 4899600 0 0 0 20311000 22992000 18331000 0 0 0 78656000 89585000 83792000 0 0 0 16464 318 15950 307040;307041;307042;307043;307044;307045;307046;307047;307048;307049;307050;307051;307052;307053;307054;307055;307056;307057;307058;307059;307060;307061 188071;188072;188073;188074;188075;188076;188077;188078;188079;188080;188081;188082;188083;188084;188085 188079 12 QALSDITAILPDGNK Unmodified 1554.8253 0.82533668 69 P02916 malF Maltose transport system permease protein MalF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.271 43.558 2 1.3957E-07 21695 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 118.87 115.19 158960000 0 0 0 733850 645620 0 14126000 10661000 16598000 6838100 7553000 6657400 11723000 9962900 10223000 0 0 0 17418000 17298000 13953000 5176900 4589300 4803800 16465 69 15951 307062;307063;307064;307065;307066;307067;307068;307069;307070;307071;307072;307073;307074;307075;307076;307077;307078 188086;188087;188088;188089;188090;188091;188092;188093;188094;188095;188096;188097;188098;188099;188100 188089 12 QALTYAVNK Unmodified 1006.5447 0.54474515 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.704 17.461 2 6.3081E-05 6107 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.65 135.57 2169100000 674530000 659780000 666330000 0 0 0 27714000 23467000 20585000 0 0 0 5902800 7347700 9892400 0 0 0 24355000 24436000 24791000 0 0 0 16466 1219 15952 307079;307080;307081;307082;307083;307084;307085;307086;307087;307088;307089;307090 188101;188102;188103 188103 3 QALVEQMQPGSAALIFAAPEVTR Unmodified 2426.2628 0.26277999 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 52.615 51.357 2;3 4.6156E-53 25095 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 313.51 288.33 921070000 114560000 114790000 105390000 0 744590 0 73080000 78344000 71585000 0 0 1499400 52714000 47424000 50814000 0 0 0 68619000 65283000 76221000 0 0 0 16467 1100 15953 307091;307092;307093;307094;307095;307096;307097;307098;307099;307100;307101;307102;307103;307104;307105;307106;307107;307108;307109;307110;307111;307112;307113;307114;307115;307116 188104;188105;188106;188107;188108;188109;188110;188111;188112;188113;188114;188115;188116;188117;188118;188119;188120;188121;188122;188123;188124;188125 188118 22 QAMAAGEK Unmodified 804.37999 0.379988 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 7.8641 8.682 2 0.014712 1878 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 71.379 54.453 160790000 28095000 23627000 28935000 0 0 0 0 0 0 0 0 0 154890 0 0 0 0 0 0 41376000 38602000 0 0 0 16468 937 15954 307117;307118;307119;307120;307121;307122 188126;188127 188126 2 QAMEDNKSDIGWGSQIR Unmodified 1933.8952 0.89522394 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.912 23.923 3 6.5552E-05 10575 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 78.597 77.6 222790000 19364000 16569000 19130000 0 0 0 16891000 15298000 18083000 0 0 0 20219000 12815000 16119000 0 0 0 26106000 18615000 23583000 0 0 0 16469 149 15955 307123;307124;307125;307126;307127;307128;307129;307130;307131;307132;307133;307134 188128;188129;188130;188131 188130 3 QAMIAAGAPADCEPQVR Unmodified 1783.8345 0.83453794 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 26.065 24.901 2;3 1.936E-39 11156 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 250.67 247.9 672650000 18648000 15452000 16090000 0 0 0 55421000 58204000 54348000 0 0 0 68155000 68585000 63918000 0 0 0 83215000 80918000 89695000 0 0 0 16470 1073 15956 307135;307136;307137;307138;307139;307140;307141;307142;307143;307144;307145;307146;307147;307148;307149;307150;307151;307152;307153;307154;307155 188132;188133;188134;188135;188136;188137;188138;188139;188140;188141;188142 188139 11 QAMWYINSQK Unmodified 1267.6019 0.60194245 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 29.034 28.169 2 0.015933 9008 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 62.463 62.463 14429000 0 0 0 0 0 629220 0 0 0 2198400 0 0 0 0 0 3983200 2152900 2511500 0 0 2953300 0 0 0 16471 80 15957 307156;307157;307158;307159;307160;307161 188143;188144;188145 188145 3 QANDLDYASLPDSVVEQVR Unmodified 2118.0229 0.022926872 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 2 2 2 45.936 44.331 2;3 2.4506E-110 21472 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 367.86 347.2 3168400000 20890000 9733500 17373000 2144700 2223200 2342400 286160000 277960000 272970000 0 2488800 5831700 394790000 367270000 359800000 0 0 0 354270000 397290000 369980000 8647200 7579900 8635700 16472 994 15958 307162;307163;307164;307165;307166;307167;307168;307169;307170;307171;307172;307173;307174;307175;307176;307177;307178;307179;307180;307181;307182;307183;307184;307185;307186;307187;307188;307189;307190;307191;307192;307193;307194;307195;307196;307197;307198 188146;188147;188148;188149;188150;188151;188152;188153;188154;188155;188156;188157;188158;188159;188160;188161;188162;188163;188164;188165;188166;188167 188160 21 QANELPGAPSQEEAVIAFGK Unmodified 2055.0273 0.027283968 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 41.109 39.506 2;3 2.5147E-23 19477 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 195.1 189.72 869390000 118310000 115550000 92414000 5382700 7390900 7608500 58656000 59008000 53350000 9568800 8367100 8136900 22848000 37529000 19873000 30133000 16042000 17857000 54811000 55802000 56206000 6338200 4454800 3752900 16473 570 15959 307199;307200;307201;307202;307203;307204;307205;307206;307207;307208;307209;307210;307211;307212;307213;307214;307215;307216;307217;307218;307219;307220;307221;307222;307223;307224;307225;307226;307227;307228;307229;307230;307231;307232;307233;307234;307235;307236;307237;307238;307239;307240;307241;307242;307243 188168;188169;188170;188171;188172;188173;188174;188175;188176;188177;188178;188179;188180;188181;188182;188183;188184;188185;188186;188187;188188;188189;188190;188191;188192;188193;188194;188195;188196;188197;188198 188181 31 QANLTPLLAILLHK Unmodified 1543.945 0.94499831 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.931 52.491 3 5.0131E-06 25753 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 106.32 106.32 363850000 44508000 43450000 46075000 0 0 0 37166000 33528000 37798000 0 0 0 18509000 21515000 18044000 0 0 0 24781000 19602000 18876000 0 0 0 16474 1341 15960 307244;307245;307246;307247;307248;307249;307250;307251;307252;307253;307254;307255 188199;188200;188201;188202;188203;188204;188205;188206;188207;188208;188209;188210 188206 12 QAPQHEDALMTLAQR Unmodified 1707.8363 0.8362525 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.703 24.534 3 3.9155E-07 10848 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.42 118.27 127500000 23692000 31171000 23506000 0 0 1511000 16414000 12940000 10201000 0 0 0 0 0 0 0 0 0 3466700 4600500 0 0 0 0 16475 1377 15961 307256;307257;307258;307259;307260;307261;307262;307263;307264 188211;188212 188211 2 QAQDGHLPTLDLTASTGISDTSYSGSK Unmodified 2749.3042 0.30424669 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 38.946 36.89 3 1.1114E-05 14842 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.359 79.639 33698000 0 0 0 0 0 0 0 0 0 4821400 3793900 4602600 0 2253900 4875200 0 0 0 5455400 0 0 2376300 2607700 2911700 16476 73 15962 307265;307266;307267;307268;307269;307270;307271;307272;307273 188213;188214 188213 2 QAQEILDTDHYGLER Unmodified 1786.8486 0.84859132 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 28.351 27.1 2;3 2.1943E-35 12307 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 250.7 244.04 1287400000 82727000 81580000 72710000 3693200 3434100 3151100 89452000 87259000 75934000 24268000 4560200 23614000 69045000 58635000 75068000 85249000 66897000 64152000 90611000 97548000 84141000 15506000 13631000 14561000 16477 536 15963 307274;307275;307276;307277;307278;307279;307280;307281;307282;307283;307284;307285;307286;307287;307288;307289;307290;307291;307292;307293;307294;307295;307296;307297;307298;307299;307300;307301;307302;307303;307304;307305;307306;307307;307308;307309;307310;307311;307312;307313;307314;307315;307316;307317;307318 188215;188216;188217;188218;188219;188220;188221;188222;188223;188224;188225;188226;188227;188228;188229;188230;188231;188232;188233;188234 188230 20 QAQINGLEMAFLSAEEKR Unmodified 2034.0204 0.020424451 1196 P22333 add Adenosine deaminase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 44.838 42.958 3 1.4561E-14 17209 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 154.47 148.89 62371000 0 0 0 0 2045400 0 3874200 4628500 2816600 12267000 12236000 12238000 2126400 0 0 0 0 0 2979100 4972700 0 0 0 2187400 16478 1196 15964 307319;307320;307321;307322;307323;307324;307325;307326;307327;307328;307329 188235;188236 188236 2 QAQQELR Unmodified 871.45118 0.45117911 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.641 11.304 2 0.000966 2027 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 140.12 115.3 973750000 147470000 157570000 144960000 21924000 18157000 17127000 62596000 74918000 68861000 14971000 11951000 9347500 0 0 0 0 0 1664100 74394000 72071000 75785000 0 0 0 16479 1211 15965 307330;307331;307332;307333;307334;307335;307336;307337;307338;307339;307340;307341;307342;307343;307344;307345 188237;188238;188239;188240;188241;188242;188243;188244 188240 8 QAQQMQEK Unmodified 989.46003 0.46002924 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.1781 7.7944 2 3.8777E-05 1908 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 173.28 170.28 1246300000 100310000 107320000 78751000 1785800 3219900 2825700 65755000 78619000 68960000 44213000 60446000 48517000 56927000 56651000 47792000 17232000 25190000 48358000 87644000 83102000 83150000 28188000 27612000 23695000 16480 416 15966 307346;307347;307348;307349;307350;307351;307352;307353;307354;307355;307356;307357;307358;307359;307360;307361;307362;307363;307364;307365;307366;307367;307368;307369;307370 188245;188246;188247;188248;188249;188250;188251;188252;188253;188254;188255;188256;188257;188258;188259;188260 188246 16 QAQQMQEK Oxidation (M) 1005.4549 0.45494386 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 6.7941 7.2803 2 0.021298 812 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 68.081 60.171 40634000 0 0 0 0 0 0 0 0 0 6879300 2460700 3290400 2891900 2593100 2287900 809530 2404800 0 4484700 4372400 4994400 1161900 2003100 0 16481 416 15966 307371;307372;307373;307374;307375;307376;307377;307378;307379;307380;307381;307382;307383 188261;188262;188263 188263 201 3 QAQQQTAETR Unmodified 1159.5582 0.55816338 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 4.8608 5.7356 2 0.054655 1020 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 61.65 45.11 44904000 0 0 0 0 0 1209100 5975200 4469000 0 0 0 0 0 4487800 0 0 0 0 8448400 10033000 10281000 0 0 0 16482 1183 15967 307384;307385;307386;307387;307388;307389;307390 188264 188264 0 QAQSLAGK Unmodified 801.43447 0.43446642 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.182 10.373 2 0.073629 1800 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 54.787 18.086 1052900000 0 0 0 0 0 0 0 0 0 255040000 199650000 201660000 0 0 0 38684000 18090000 16934000 0 910620 0 116520000 107330000 98050000 16483 1408 15968 307391;307392;307393;307394;307395;307396;307397;307398;307399;307400 188265;188266 188266 2 QAQVVMHDQAPALIIAHSTVFEPVR Unmodified 2756.4432 0.44320397 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 2 1 1 1 2 2 1 2 40.597 38.985 3;4 3.6368E-72 18834 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 282.76 281.8 2858500000 993210000 944920000 756840000 0 0 0 15673000 19249000 15292000 0 0 0 9741800 9312800 11026000 0 0 0 31351000 25312000 26522000 0 0 0 16484 1219 15969 307401;307402;307403;307404;307405;307406;307407;307408;307409;307410;307411;307412;307413;307414;307415;307416;307417;307418;307419;307420;307421;307422 188267;188268;188269;188270;188271;188272;188273;188274;188275;188276;188277 188275 11 QAQVVMHDQAPALIIAHSTVFEPVRK Unmodified 2884.5382 0.53816699 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 3 3 3 2 2 2 2 1 1 1 1 1 1 2 2 35.258 33.784 3;4;5 2.004E-84 15996 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 301 297.88 2271900000 788580000 679260000 658860000 5187800 6262900 4247100 20886000 9194400 14338000 0 0 0 4675700 3614300 4936800 0 0 0 13196000 28612000 30048000 0 0 0 16485 1219 15970 307423;307424;307425;307426;307427;307428;307429;307430;307431;307432;307433;307434;307435;307436;307437;307438;307439;307440;307441;307442;307443;307444;307445;307446;307447;307448;307449 188278;188279;188280;188281;188282;188283;188284;188285;188286;188287;188288;188289;188290 188290 13 QAQYNFVGASEQLESAHR Unmodified 2033.9555 0.95551601 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.904 28.451 3 6.6479E-07 10547 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 102.08 98.107 157380000 7518700 0 0 1631800 1696800 1919500 6158300 5056700 7439000 10003000 7403800 8774500 10051000 11135000 11904000 0 5513100 3920200 13208000 14513000 15752000 4659200 4814000 4306100 16486 73 15971 307450;307451;307452;307453;307454;307455;307456;307457;307458;307459;307460;307461;307462;307463;307464;307465;307466;307467;307468;307469;307470 188291;188292;188293;188294;188295;188296;188297;188298;188299;188300;188301 188297 11 QASDTIDYSVGFTDMAR Unmodified 1875.8309 0.83089235 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 42.214 40.26 2 1.4089E-24 19887 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 219.35 216.16 128390000 0 0 0 0 0 0 32645000 32860000 25663000 0 0 0 0 0 0 0 0 0 20178000 0 17044000 0 0 0 16487 167 15972 307471;307472;307473;307474;307475 188302;188303;188304 188304 3 QASFDPSVLAIK Unmodified 1274.6871 0.68705229 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 40.428 38.917 2 0.017271 18733 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 52.6 41.77 42497000 16186000 0 13654000 0 842990 0 0 0 0 0 0 0 3488400 0 3697600 0 0 0 0 0 4628800 0 0 0 16488 326 15973 307476;307477;307478;307479;307480;307481 188305 188305 1 QASHLALSASETAQR Unmodified 1568.7907 0.79068251 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 13.852 14.795 3 1.1598E-11 3479 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 119.63 98.678 53884000 9533500 8723800 7435300 10205000 9228300 8758000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16489 76 15974 307482;307483;307484;307485;307486;307487 188306;188307;188308 188306 3 QASQLAQSASDTAQHGGK Unmodified 1783.8449 0.84490293 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 2 2 1 2 1 1 1 1 12.165 12.967 2;3 7.7215E-30 3609 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.42 172.3 388690000 59925000 67236000 61961000 61102000 60106000 67064000 0 0 0 0 1864000 1481400 0 0 0 0 0 0 0 3696500 4259200 0 0 0 16490 151 15975 307488;307489;307490;307491;307492;307493;307494;307495;307496;307497;307498;307499;307500;307501 188309;188310;188311;188312;188313;188314;188315 188314 7 QATAALTALSDVDNDEETRK Unmodified 2147.0342 0.034219839 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.198 27.869 3 1.7625E-18 9438 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 161.95 153.56 209420000 0 8547500 0 19569000 23604000 21175000 7030600 9343000 8372900 8208500 7791100 8358800 3988900 7345300 4785700 2115600 1825100 2371500 8599900 8685500 9830900 15108000 13128000 9629500 16491 1899 15976 307502;307503;307504;307505;307506;307507;307508;307509;307510;307511;307512;307513;307514;307515;307516;307517;307518;307519;307520;307521;307522;307523 188316;188317;188318 188318 3 QATDSALR Unmodified 860.43519 0.4351947 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.518 11.933 2 2.692E-06 2318 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 183.89 163.34 147470000 0 0 0 13142000 11684000 11464000 0 0 0 25821000 21047000 15900000 0 0 0 0 3138600 4866900 0 0 0 11831000 14766000 13809000 16492 649 15977 307524;307525;307526;307527;307528;307529;307530;307531;307532;307533;307534 188319;188320;188321;188322;188323;188324;188325 188324 7 QATEVALLVDHSK Unmodified 1409.7514 0.75144346 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 25.149 24.121 3 0.00019912 7910 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 80.905 77.867 65626000 7330400 10546000 4025300 6798600 6009100 5921600 0 4711800 0 0 0 0 0 0 0 0 0 0 0 5548700 4887500 5531700 4314900 0 16493 1933 15978 307535;307536;307537;307538;307539;307540;307541;307542;307543;307544;307545 188326;188327;188328 188327 3 QATFEEMIAR Unmodified 1194.5703 0.57030797 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 33.04 31.656 2 5.6482E-06 11129 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 156.01 139.8 1530300000 274250000 207860000 205820000 17717000 16724000 17198000 21893000 21961000 22227000 34760000 0 36702000 64147000 55823000 58390000 34032000 20475000 24961000 102140000 108920000 109540000 0 35478000 39258000 16494 569 15979 307546;307547;307548;307549;307550;307551;307552;307553;307554;307555;307556;307557;307558;307559;307560;307561;307562;307563;307564;307565;307566;307567;307568;307569 188329;188330;188331;188332;188333;188334;188335;188336;188337;188338;188339;188340;188341;188342;188343;188344;188345;188346;188347 188329 13 QATGADQLVPAPEAGATQPAEFHCHPSNTINALNR Unmodified 3682.7547 0.75465472 947 P0AFJ7 pitA Low-affinity inorganic phosphate transporter 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 32.204 30.663 4 0.0010599 12072 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 54.375 54.049 135140000 0 0 0 2301800 0 0 0 13653000 10568000 7443900 0 0 17590000 8293000 0 0 0 0 25872000 27411000 22008000 0 0 0 16495 947 15980 307570;307571;307572;307573;307574;307575;307576;307577;307578 188348 188348 1 QATQGDELTIK Unmodified 1202.6143 0.61428128 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.646 18.249 2 0.00022211 6329 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 101.66 87.17 270500000 19427000 14446000 11518000 678040 668800 0 29577000 26947000 26854000 0 390480 0 22393000 21694000 19430000 0 0 0 24019000 29422000 21823000 1217200 0 0 16496 670 15981 307579;307580;307581;307582;307583;307584;307585;307586;307587;307588;307589;307590;307591;307592;307593;307594 188349;188350;188351;188352;188353;188354 188353 3 QATTTPPTLTLITDDSHWTLR Unmodified 2367.207 0.20703925 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 47.528 46.248 3 3.2488E-10 22432 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.72 108.41 170880000 32479000 36578000 29240000 0 0 0 0 0 0 0 0 0 19051000 16067000 13796000 0 0 0 0 0 23667000 0 0 0 16497 953 15982 307595;307596;307597;307598;307599;307600;307601 188355;188356;188357;188358 188355 4 QAVEGMK Unmodified 761.37417 0.37417435 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.109 11.87 2 0.12961 2919 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 58.981 32.872 887630000 0 91258000 84979000 0 0 0 94158000 82511000 81699000 0 0 0 97885000 73325000 68405000 13653000 0 0 102070000 9791600 87897000 0 0 0 16498 1294 15983 307602;307603;307604;307605;307606;307607;307608;307609;307610;307611;307612;307613 188359 188359 0 QAVLDQFAK Unmodified 1018.5447 0.54474515 808 P0ADU2 ygiN Probable quinol monooxygenase YgiN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.87 24.798 2 0.00044672 11094 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.03 99.947 1782600000 160500000 153990000 137500000 0 0 0 195490000 185930000 204130000 0 0 0 129500000 113980000 106490000 0 0 0 138760000 127330000 129000000 0 0 0 16499 808 15984 307614;307615;307616;307617;307618;307619;307620;307621;307622;307623;307624;307625 188360;188361;188362;188363;188364;188365;188366;188367;188368;188369;188370;188371 188366 12 QAVPTLR Unmodified 783.46029 0.46028724 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 2 2 1 1 2 1 1 1 1 1 2 3 2 3 1 1 1 1 1 1 16.806 17.318 2 0.00022692 4758 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 163.84 94.751 19510000000 205370000 184710000 172820000 26025000 25857000 30473000 171300000 162140000 143680000 1486600000 705980000 602590000 174880000 147310000 142690000 4191800000 3394900000 3653900000 210340000 242350000 207400000 910770000 916180000 1399800000 16500 463 15985 307626;307627;307628;307629;307630;307631;307632;307633;307634;307635;307636;307637;307638;307639;307640;307641;307642;307643;307644;307645;307646;307647;307648;307649;307650;307651;307652;307653;307654;307655;307656;307657;307658;307659;307660;307661;307662 188372;188373;188374;188375;188376;188377;188378;188379;188380;188381;188382;188383;188384;188385;188386;188387;188388;188389;188390;188391;188392;188393;188394;188395;188396;188397;188398;188399;188400;188401;188402;188403;188404;188405;188406;188407;188408;188409;188410 188372 36 QAVPTLRADKPLVGTGMER Unmodified 2038.0993 0.099343474 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.953 23.962 4 0.091797 7218 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 30.094 29.516 41329000 0 0 0 0 0 0 0 0 0 5629800 4646800 4124100 0 0 0 4093900 6047800 4665500 0 0 0 3707500 3832900 4580300 16501 463 15986 307663;307664;307665;307666;307667;307668;307669;307670;307671 188411;188412;188413;188414 188412 4 QAVTMDKPFLNAYSR Unmodified 1739.8665 0.86648999 195 P08997 aceB Malate synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 1 2 1 2 29.539 28.246 2;3 5.2531E-20 12919 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 216.06 200.52 2001400000 534170000 452050000 516340000 1956900 1710600 1556300 104110000 96166000 101950000 0 0 0 31172000 29610000 22126000 0 0 0 44277000 8813600 55432000 0 0 0 16502 195 15987 307672;307673;307674;307675;307676;307677;307678;307679;307680;307681;307682;307683;307684;307685;307686;307687;307688;307689;307690;307691;307692;307693;307694;307695;307696 188415;188416;188417;188418;188419;188420;188421;188422;188423 188421 9 QAVTNPQNTLFAIK Unmodified 1543.8358 0.83584179 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 36.11 34.564 2;3 4.9193E-10 16470 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 187.42 171.83 6999700000 597770000 621240000 519190000 22872000 22430000 22518000 644340000 649840000 502810000 159400000 122950000 142150000 425000000 378980000 374600000 15590000 9947900 9421900 452890000 547590000 630710000 46681000 39804000 40946000 16503 293 15988 307697;307698;307699;307700;307701;307702;307703;307704;307705;307706;307707;307708;307709;307710;307711;307712;307713;307714;307715;307716;307717;307718;307719;307720;307721;307722;307723;307724;307725;307726;307727;307728;307729;307730;307731;307732;307733;307734;307735;307736;307737;307738;307739;307740;307741;307742;307743 188424;188425;188426;188427;188428;188429;188430;188431;188432;188433;188434;188435;188436;188437;188438;188439;188440;188441;188442;188443;188444;188445;188446;188447;188448;188449;188450;188451 188447 28 QAVTNPQNTLFAIKR Unmodified 1699.937 0.93695282 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 28.862 27.113 3 4.8419E-05 10243 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 84.753 82.683 219980000 0 0 0 17411000 15993000 17573000 0 0 0 45882000 35780000 36655000 0 0 0 0 0 0 0 0 0 18663000 14347000 17674000 16504 293 15989 307744;307745;307746;307747;307748;307749;307750;307751;307752 188452;188453;188454;188455;188456;188457;188458 188453 7 QAVVAAAAGADFIAPSAAMDGQVQAIR Unmodified 2598.3224 0.32242013 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.291 46.968 3 8.1759E-31 23028 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 180.84 178.53 248380000 21504000 19200000 16724000 0 0 0 26390000 19989000 20800000 0 0 0 21157000 19212000 15793000 0 0 0 25472000 21658000 20482000 0 0 0 16505 715 15990 307753;307754;307755;307756;307757;307758;307759;307760;307761;307762;307763;307764 188459;188460;188461;188462;188463;188464;188465;188466;188467;188468;188469 188465 11 QAVVVPESK Unmodified 955.53385 0.53384611 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.507 15.122 2 0.0007976 4977 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.98 96.966 341930000 29957000 34830000 28265000 3707800 3991100 0 32121000 34909000 26978000 1417400 1170100 839210 16981000 14901000 16622000 0 0 0 29194000 31119000 33587000 648840 689520 0 16506 839 15991 307765;307766;307767;307768;307769;307770;307771;307772;307773;307774;307775;307776;307777;307778;307779;307780;307781;307782;307783 188470;188471;188472;188473;188474;188475;188476;188477;188478;188479 188476 10 QAYEQGFSQR Unmodified 1212.5523 0.55234972 519 P0A9H1 mug G/U mismatch-specific DNA glycosylase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.766 15.54 2 0.0017084 5320 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.761 86.827 129530000 18804000 26194000 22853000 0 0 0 12837000 8865500 8689700 0 0 0 3712100 3570500 3767600 0 0 0 7858000 5665100 6714100 0 0 0 16507 519 15992 307784;307785;307786;307787;307788;307789;307790;307791;307792;307793;307794;307795 188480;188481;188482 188480 0 QAYGQALAMYHGQTYQIAPEQPLGDK Unmodified 2877.3756 0.37557791 813 P0ADV7 mlaC Probable phospholipid-binding protein MlaC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 37.814 36.161 3 2.8735E-05 17574 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 82.302 79.794 117680000 13017000 9047400 15792000 0 0 0 12730000 14789000 0 0 0 0 4721300 0 10794000 0 0 0 13280000 11132000 12380000 0 0 0 16508 813 15993 307796;307797;307798;307799;307800;307801;307802;307803;307804;307805 188483;188484 188483 2 QAYILQNEDK Unmodified 1220.6037 0.60371659 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.493 19.726 2 4.3403E-05 7717 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.98 134.36 213110000 0 0 0 0 0 0 41249000 41648000 40460000 3935500 4381400 5268400 17573000 18165000 12194000 300450 0 518640 14618000 0 12145000 650900 0 0 16509 1088 15994 307806;307807;307808;307809;307810;307811;307812;307813;307814;307815;307816;307817;307818;307819 188485;188486;188487;188488;188489;188490 188487 6 QAYILQNEDKR Unmodified 1376.7048 0.70482762 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 14.79 15.322 2;3 5.5362E-14 4189 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 204.07 185.29 1923100000 5744700 5283900 3868700 3217800 3558700 4420400 201640000 228870000 225710000 230080000 187210000 174970000 90295000 74789000 64903000 25347000 19770000 21445000 80880000 77125000 87506000 34660000 38648000 33196000 16510 1088 15995 307820;307821;307822;307823;307824;307825;307826;307827;307828;307829;307830;307831;307832;307833;307834;307835;307836;307837;307838;307839;307840;307841;307842;307843;307844;307845;307846;307847;307848;307849;307850;307851;307852;307853;307854;307855;307856;307857;307858;307859;307860;307861;307862;307863;307864;307865 188491;188492;188493;188494;188495;188496;188497;188498;188499;188500;188501;188502;188503;188504;188505;188506;188507;188508;188509;188510;188511;188512;188513;188514;188515;188516;188517;188518;188519;188520;188521;188522;188523;188524;188525 188499 35 QCAAFVSGVVK Unmodified 1164.5961 0.59612879 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.009 23.874 2 0.0013977 10833 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 79.974 70.58 122780000 9866000 11180000 10022000 0 219320 0 9382200 8471700 9549500 1122900 1054100 1045300 9281000 6405800 7403400 0 0 0 11265000 12489000 14024000 0 0 0 16511 1164 15996 307866;307867;307868;307869;307870;307871;307872;307873;307874;307875;307876;307877;307878;307879;307880;307881 188526;188527;188528;188529;188530 188527 5 QCANCTK Unmodified 880.35312 0.35312133 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 4.2681 5.2419 2 0.027894 773 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 69.176 67.383 10434000 0 0 0 0 0 0 0 0 0 0 0 0 3228700 3992000 3213700 0 0 0 0 0 0 0 0 0 16512 1097 15997 307882;307883;307884 188531;188532;188533 188531 3 QCAQLHAAGHR Unmodified 1247.5942 0.59417173 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 2 2 7.8477 8.6641 2;3 9.9719E-06 1666 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.19 117.71 41193000 4849700 5431200 9701600 0 0 0 0 0 0 0 0 0 169880 0 1828800 0 0 0 4369500 6326400 8515400 0 0 0 16513 328 15998 307885;307886;307887;307888;307889;307890;307891;307892;307893;307894;307895 188534;188535;188536;188537;188538;188539 188538 6 QCEPMTITVNAGK Unmodified 1447.6799 0.67993477 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 24.696 23.726 2 1.0797E-05 10342 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.4 114.64 69027000 9874400 9778800 9009400 0 0 0 4490000 4321300 0 0 0 0 4555200 4525000 2678300 0 0 0 6499200 6744700 6550600 0 0 0 16514 623 15999 307896;307897;307898;307899;307900;307901;307902;307903;307904;307905;307906 188540;188541;188542 188542 3 QCMHCVDPNCVSVCPVSALK Unmodified 2360.0204 0.020382926 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.573 28.905 3 8.3171E-07 13041 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 90.581 90.115 191370000 0 0 0 0 0 0 24697000 22988000 28190000 6208900 5166500 5936200 21399000 18324000 15716000 0 0 0 13930000 15872000 12938000 0 0 0 16515 600 16000 307907;307908;307909;307910;307911;307912;307913;307914;307915;307916;307917;307918 188543;188544;188545;188546;188547;188548;188549 188548 7 QCNPALAALLDK Unmodified 1312.6809 0.68092105 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.433 37.738 2 6.7061E-05 18247 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.22 97.739 1404100000 41466000 38751000 32916000 1383600 1249400 1448500 131510000 118330000 124940000 49157000 47632000 48100000 83003000 79008000 74586000 29652000 20343000 0 146890000 136590000 150660000 14619000 16401000 15479000 16516 30 16001 307919;307920;307921;307922;307923;307924;307925;307926;307927;307928;307929;307930;307931;307932;307933;307934;307935;307936;307937;307938;307939;307940;307941 188550;188551;188552;188553;188554;188555;188556;188557;188558;188559;188560;188561;188562 188561 11 QCQLAER Unmodified 903.42325 0.4232498 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.157 12.002 2 0.0058863 3050 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.822 69.893 152790000 16472000 0 15466000 0 0 0 13830000 13435000 12387000 0 0 0 14250000 13936000 12597000 0 0 0 12632000 14851000 12933000 0 0 0 16517 137 16002 307942;307943;307944;307945;307946;307947;307948;307949;307950;307951;307952;307953 188563;188564;188565 188564 3 QDAAPPPPHAIEDGYR Unmodified 1732.8169 0.81689726 1361 P31130 ydeI Uncharacterized protein YdeI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 1 19.119 19.591 2;3 3.1996E-18 7385 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 181.98 179.47 395230000 99252000 96078000 85198000 0 0 0 34115000 39807000 35256000 0 0 0 5529100 0 0 0 0 0 0 0 0 0 0 0 16518 1361 16003 307954;307955;307956;307957;307958;307959;307960;307961;307962;307963;307964;307965 188566;188567;188568;188569;188570;188571 188570 6 QDAIDAVEQHGIVFIDEIDK Unmodified 2254.1117 0.11174188 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 53.307 51.877 2;3 3.6253E-96 25814 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 358.02 334.19 2312300000 150590000 145530000 153780000 3405900 2610200 3112200 168130000 200410000 187730000 14567000 11992000 11292000 182250000 197330000 194870000 0 0 0 212050000 225600000 227030000 6742200 5532500 7795000 16519 245 16004 307966;307967;307968;307969;307970;307971;307972;307973;307974;307975;307976;307977;307978;307979;307980;307981;307982;307983;307984;307985;307986;307987;307988;307989;307990;307991;307992;307993;307994;307995;307996;307997;307998 188572;188573;188574;188575;188576;188577;188578;188579;188580;188581;188582;188583;188584;188585;188586;188587;188588;188589;188590;188591;188592;188593 188576 22 QDAIDAVEQHGIVFIDEIDKICK Unmodified 2655.3214 0.32141708 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 53.749 52.355 4 0.0009348 21299 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 63.726 60.964 75174000 0 0 0 4539300 3239300 3628800 0 0 0 14994000 14515000 16282000 0 0 0 0 0 0 0 0 0 5077400 7775500 5121500 16520 245 16005 307999;308000;308001;308002;308003;308004;308005;308006;308007 188594;188595;188596;188597;188598 188594 5 QDAKYPVDAQLK Unmodified 1374.7143 0.71432967 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.818 18.014 3 0.0037644 5438 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 49.025 41.481 54956000 0 0 0 6155400 5163400 4573000 0 0 0 3836600 3195700 3839900 0 0 0 1689700 1690800 1862800 0 0 0 7415000 8164300 7369300 16521 215 16006 308008;308009;308010;308011;308012;308013;308014;308015;308016;308017;308018;308019 188599;188600;188601;188602;188603;188604;188605 188600 7 QDASLVSIR Unmodified 987.53491 0.53490874 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.656 22.934 2 6.5335E-06 10196 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 171.53 135.35 607140000 9727100 10508000 11073000 0 0 0 59844000 70393000 62182000 0 0 0 79422000 83595000 68476000 0 0 0 51233000 55700000 44984000 0 0 0 16522 1947 16007 308020;308021;308022;308023;308024;308025;308026;308027;308028;308029;308030;308031 188606;188607;188608;188609;188610;188611;188612;188613;188614;188615;188616 188607 11 QDAVQHAQQLLK Unmodified 1377.7365 0.7364621 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 20.824 20.89 2;3 7.5225E-07 6751 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 134.51 90.16 100390000 0 0 0 0 0 0 0 22244000 19227000 8237300 6564300 0 0 5640200 7006900 0 2963900 3022000 25484000 0 0 0 0 0 16523 143 16008 308032;308033;308034;308035;308036;308037;308038;308039;308040;308041 188617;188618 188618 2 QDDAMVAFQNFIK Unmodified 1525.7235 0.72351415 1583 P45955 ybgF Uncharacterized protein YbgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 51.31 50.163 2 3.0778E-24 24256 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 242.59 242.59 309220000 36328000 36032000 28978000 0 0 0 16869000 16717000 20761000 0 0 0 21989000 24911000 25592000 0 3826400 0 29028000 24907000 23281000 0 0 0 16524 1583 16009 308042;308043;308044;308045;308046;308047;308048;308049;308050;308051;308052;308053;308054 188619;188620;188621;188622;188623;188624;188625;188626;188627;188628;188629;188630 188624 12 QDDYAPNYFLPTK Unmodified 1570.7304 0.73037367 1538 P39407 yjjU Uncharacterized protein YjjU yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 40.608 38.024 2 0.016208 15169 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 55.801 55.395 11226000 0 0 0 0 0 0 0 0 0 4166500 3730700 3328400 0 0 0 0 0 0 0 0 0 0 0 0 16525 1538 16010 308055;308056;308057 188631;188632 188631 2 QDEKLDINIDEEVHR Unmodified 1851.8963 0.8962698 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 1 2 2 2 1 2 2 2 2 2 2 2 2 25.762 24.563 3;4 0.0053804 8692 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 55.656 51.688 186820000 11604000 9579700 11722000 0 2208100 1701100 7657900 7864200 7061100 8199600 7260700 7366600 5515600 8690700 6648600 0 0 0 17205000 15560000 14853000 14241000 11170000 10715000 16526 651 16011 308058;308059;308060;308061;308062;308063;308064;308065;308066;308067;308068;308069;308070;308071;308072;308073;308074;308075;308076;308077;308078;308079;308080;308081;308082;308083;308084;308085;308086;308087;308088;308089;308090;308091 188633;188634;188635;188636 188635 4 QDGPTALILSR Unmodified 1169.6404 0.64043645 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 33.887 32.05 2 2.7622E-06 15288 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 125.75 79.321 1773100000 0 0 0 0 0 0 458850000 407250000 445210000 0 0 0 0 0 0 0 0 0 449950000 0 0 4004600 4023400 3854600 16527 1299 16012 308092;308093;308094;308095;308096;308097;308098;308099;308100;308101;308102 188637;188638;188639;188640;188641 188638 5 QDGTYDK Unmodified 825.35046 0.35046202 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 7.1069 7.8394 2 0.0058808 1558 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.798 66.509 139530000 47329000 45003000 47199000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16528 217 16013 308103;308104;308105 188642;188643;188644 188644 3 QDHAANPCGQIGETVDLDEAVQR Unmodified 2522.1456 0.14557798 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 31.676 30.247 3 1.8088E-35 14204 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 210.29 206.76 544750000 0 0 0 0 0 0 44132000 37414000 36299000 0 0 0 61540000 64563000 54106000 0 0 0 86726000 81616000 78358000 0 0 0 16529 38 16014 308106;308107;308108;308109;308110;308111;308112;308113;308114 188645;188646;188647;188648;188649;188650;188651;188652;188653 188649 9 QDIESNLQYDAGDK Unmodified 1594.7111 0.71109479 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.288 24.225 2 2.2848E-26 10879 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 231.17 231.17 206910000 21641000 15577000 12601000 0 0 0 17792000 17784000 16249000 0 0 0 16356000 16769000 11356000 0 0 0 21423000 20882000 18482000 0 0 0 16530 1137 16015 308115;308116;308117;308118;308119;308120;308121;308122;308123;308124;308125;308126 188654;188655;188656;188657;188658;188659;188660;188661;188662;188663;188664;188665 188657 12 QDIGEILIDNPK Unmodified 1353.714 0.71399532 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.232 36.333 2 2.0759E-06 17627 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 175.65 166.31 151970000 20422000 0 0 3457400 3066000 3124800 12475000 14084000 10336000 3251000 3654300 2540800 8224800 6444900 8614700 0 0 0 19458000 15265000 15011000 2539600 0 0 16531 1183 16016 308127;308128;308129;308130;308131;308132;308133;308134;308135;308136;308137;308138;308139;308140;308141;308142;308143 188666;188667;188668;188669;188670;188671;188672;188673;188674 188668 8 QDIIFAILK Unmodified 1059.6328 0.63283187 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.89 50.578 2 0.00030936 20357 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 117.04 99.65 85716000 7103500 8775600 11171000 1933300 2649300 2011300 5486400 4025000 5863100 8533500 6098500 7263200 1456600 3379300 2710200 0 0 0 0 3293400 3098800 0 863340 0 16532 982 16017 308144;308145;308146;308147;308148;308149;308150;308151;308152;308153;308154;308155;308156;308157;308158;308159;308160;308161 188675;188676;188677;188678;188679;188680;188681;188682 188676 8 QDLDQLQAGAR Unmodified 1213.6051 0.60511357 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 19.968 20.452 2 6.9848E-11 8007 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 199.46 185.69 913960000 0 71446000 56542000 0 0 0 76904000 79633000 82044000 0 0 0 82228000 71832000 71226000 0 0 0 102130000 97548000 122430000 0 0 0 16533 1188 16018 308162;308163;308164;308165;308166;308167;308168;308169;308170;308171;308172 188683;188684;188685 188684 3 QDLEMEALTFKPEEWGMK Unmodified 2181.0122 0.01222753 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.734 48.307 3 1.1424E-09 22626 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 117.2 117.2 420170000 21641000 22031000 22329000 2748000 0 0 22591000 24164000 35114000 7117900 6650900 6187300 47599000 37152000 38110000 0 0 0 55236000 0 51940000 7520500 6986300 5055500 16534 1426 16019 308173;308174;308175;308176;308177;308178;308179;308180;308181;308182;308183;308184;308185;308186;308187;308188;308189;308190 188686;188687;188688;188689;188690;188691;188692;188693;188694 188693 9 QDLMLAGVICGNR Unmodified 1445.7119 0.7119036 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 41.949 40.268 2;3 2.1533E-31 19738 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 260.04 256.02 1378100000 122190000 116400000 102220000 466020 581430 0 78107000 82072000 78802000 0 0 0 130350000 121960000 141100000 0 0 0 135460000 132330000 136060000 0 0 0 16535 161 16020 308191;308192;308193;308194;308195;308196;308197;308198;308199;308200;308201;308202;308203;308204;308205;308206;308207;308208;308209;308210;308211;308212;308213;308214;308215 188695;188696;188697;188698;188699;188700;188701;188702;188703;188704;188705;188706;188707 188702 13 QDLQALLGK Unmodified 984.5604 0.56039521 447 P0A8N0 matP Macrodomain Ter protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 33.77 32.349 2 0.076053 15477 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 53.754 34.24 17253000 3403500 5138000 2589400 0 0 0 0 1772500 2764100 0 0 0 0 1585500 0 0 0 0 0 0 0 0 0 0 16536 447 16021 308216;308217;308218;308219;308220;308221 188708 188708 0 QDLTEAFQFAAEGK Unmodified 1553.7362 0.73618733 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 44.789 43.213 2 3.837E-06 21210 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.98 112.33 133950000 25512000 26933000 27980000 0 0 0 10191000 10110000 9959500 0 0 0 0 0 0 0 0 0 7950900 8231400 7085700 0 0 0 16537 1541 16022 308222;308223;308224;308225;308226;308227;308228;308229;308230 188709;188710;188711;188712;188713;188714 188712 6 QDLVYEKEDLLISGPGK Unmodified 1902.9939 0.99385857 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.313 33.788 3 2.2067E-06 16237 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.311 87.394 280410000 11099000 7764100 8276000 2130800 0 2698900 21679000 19038000 19662000 9594900 9729100 11515000 13327000 16987000 13343000 2167400 1843500 2078200 30253000 32160000 24437000 7210100 6823800 6593300 16538 930 16023 308231;308232;308233;308234;308235;308236;308237;308238;308239;308240;308241;308242;308243;308244;308245;308246;308247;308248;308249;308250;308251;308252;308253 188715;188716;188717;188718;188719;188720;188721;188722;188723;188724;188725;188726;188727;188728;188729 188724 14 QDLVYEKEDLLISGPGKYPEYNFYR Unmodified 3035.4917 0.49165353 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 43.237 41.342 4 2.8247E-10 16495 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 121.25 118.88 86416000 0 0 0 3701300 4140900 3899300 0 0 0 13156000 14274000 12554000 0 0 0 5370900 0 0 0 0 0 9552700 10656000 9111400 16539 930 16024 308254;308255;308256;308257;308258;308259;308260;308261;308262;308263 188730;188731;188732;188733;188734;188735;188736 188732 7 QDNLLAAIWQDSK Unmodified 1500.7573 0.75725712 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.179 50.931 2 1.4073E-09 23889 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 177.57 162.87 129580000 10204000 12017000 8567600 0 0 0 9539400 11559000 9708300 0 0 0 10941000 10826000 7332800 0 0 0 11387000 15411000 12082000 0 0 0 16540 1230 16025 308264;308265;308266;308267;308268;308269;308270;308271;308272;308273;308274;308275 188737;188738;188739;188740;188741;188742 188741 6 QDNTIEMASLESCIR Unmodified 1765.7975 0.79748373 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 39.526 37.852 2;3 2.1744E-45 18795 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 273.3 264.34 954540000 71509000 59691000 56649000 0 0 0 80396000 74085000 65838000 0 0 0 88754000 68053000 80011000 0 0 0 99334000 105670000 104550000 0 0 0 16541 63 16026 308276;308277;308278;308279;308280;308281;308282;308283;308284;308285;308286;308287;308288;308289;308290;308291;308292;308293;308294;308295;308296;308297;308298;308299 188743;188744;188745;188746;188747;188748;188749;188750;188751;188752;188753;188754;188755;188756;188757;188758 188743 14 QDQFAFEEFTVLDTVIMGHK Unmodified 2354.1253 0.12528345 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 54.965 53.476 3 0.01517 26397 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 49.559 42.226 209340000 23802000 23792000 19647000 0 1842600 0 17642000 19339000 0 0 32011000 0 0 0 0 0 0 0 27148000 19166000 24951000 0 0 0 16542 558 16027 308300;308301;308302;308303;308304;308305;308306;308307;308308;308309 188759;188760;188761 188761 0 QDTAGSELLPQAK Unmodified 1356.6885 0.68850885 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.127 23.223 2 3.0277E-05 10452 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 127.51 114.24 342940000 41095000 49434000 39737000 0 0 0 30470000 34462000 37046000 0 0 0 20665000 13296000 19688000 0 0 0 17883000 15679000 21388000 0 1200400 892810 16543 1341 16028 308310;308311;308312;308313;308314;308315;308316;308317;308318;308319;308320;308321;308322;308323 188762;188763;188764;188765;188766;188767 188763 5 QDTNMLFVR Unmodified 1122.5492 0.5491786 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.166 30.826 2 0.00022858 14948 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.08 106.69 340430000 31672000 28325000 27275000 0 0 0 34542000 34768000 32408000 0 0 0 20914000 22456000 23989000 0 0 0 26749000 30623000 26712000 0 0 0 16544 1778 16029 308324;308325;308326;308327;308328;308329;308330;308331;308332;308333;308334;308335 188768;188769;188770;188771;188772;188773;188774;188775;188776;188777;188778;188779 188768 12 QDVLGDLMSR Unmodified 1132.5547 0.55465791 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 40.301 38.664 2 3.7337E-12 18778 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.12 171.32 7088200000 555640000 490040000 485200000 11015000 13189000 10963000 518600000 468540000 485840000 20304000 16696000 14185000 526430000 539190000 443330000 18073000 10527000 14059000 820640000 811610000 775670000 11205000 12186000 15050000 16545 396 16030 308336;308337;308338;308339;308340;308341;308342;308343;308344;308345;308346;308347;308348;308349;308350;308351;308352;308353;308354;308355;308356;308357;308358;308359;308360;308361;308362;308363 188780;188781;188782;188783;188784;188785;188786;188787;188788;188789;188790;188791;188792;188793;188794;188795;188796;188797;188798;188799;188800 188796 18 QDVPSFR Unmodified 847.41882 0.41881635 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 19.421 19.868 2 2.394E-05 7258 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 143.23 107.42 316680000 71089000 71475000 55724000 0 0 236880 0 18220000 12981000 0 0 0 0 0 0 0 0 0 41108000 45848000 0 0 0 0 16546 352 16031 308364;308365;308366;308367;308368;308369;308370;308371;308372;308373;308374 188801;188802;188803;188804;188805;188806;188807;188808 188808 8 QDVPSFRPGDTVEVK Unmodified 1672.842 0.84204938 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 2 2 2 26.867 25.669 2;3 1.3658E-35 11619 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 263.89 251.33 6741000000 1003800000 916310000 712730000 12221000 17064000 19285000 268400000 271130000 259490000 52640000 47518000 48648000 344160000 341210000 363170000 43208000 35740000 43194000 589650000 598440000 601320000 60708000 52274000 38645000 16547 352 16032 308375;308376;308377;308378;308379;308380;308381;308382;308383;308384;308385;308386;308387;308388;308389;308390;308391;308392;308393;308394;308395;308396;308397;308398;308399;308400;308401;308402;308403;308404;308405;308406;308407;308408;308409;308410;308411;308412;308413;308414;308415;308416 188809;188810;188811;188812;188813;188814;188815;188816;188817;188818;188819;188820;188821;188822;188823;188824;188825;188826;188827;188828;188829;188830;188831;188832;188833;188834;188835;188836;188837;188838;188839;188840;188841;188842;188843;188844;188845;188846;188847;188848 188829 40 QDVVDCEVK Unmodified 1090.4965 0.49647433 816 P0ADX1 yhfA Protein YhfA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.831 15.618 2 0.00029962 5148 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 117.89 99.85 164020000 12855000 14182000 14065000 0 0 0 21553000 17265000 15906000 0 0 0 9795600 10040000 8305100 0 0 0 12954000 12913000 14190000 0 0 0 16548 816 16033 308417;308418;308419;308420;308421;308422;308423;308424;308425;308426;308427;308428 188849;188850;188851;188852;188853;188854;188855;188856;188857;188858 188855 10 QDYTVVIVTHNMQQAAR Unmodified 1972.9789 0.97889399 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 31.806 30.313 2;3 5.2149E-31 14271 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 247.88 233.92 1718400000 0 0 0 0 0 852300 124620000 123770000 120310000 69516000 50535000 47824000 130860000 113240000 127310000 16754000 8212800 10502000 221040000 229650000 227840000 33745000 29398000 32442000 16549 594 16034 308429;308430;308431;308432;308433;308434;308435;308436;308437;308438;308439;308440;308441;308442;308443;308444;308445;308446;308447;308448;308449;308450;308451;308452;308453;308454;308455;308456;308457;308458;308459;308460;308461;308462;308463 188859;188860;188861;188862;188863;188864;188865;188866;188867;188868;188869;188870;188871;188872;188873;188874;188875;188876;188877;188878;188879;188880;188881;188882;188883;188884;188885;188886;188887;188888;188889;188890 188881 31 QDYYEILGVSK Unmodified 1313.6503 0.65033243 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.62 37.761 2 0.002687 14717 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 68.76 57.609 133920000 11320000 10951000 10945000 1248500 1617300 1176000 5750700 6285800 7822900 4375800 4250300 2716600 7128300 5597100 6316200 0 0 0 12839000 14887000 11781000 2587100 2344400 1980100 16550 190 16035 308464;308465;308466;308467;308468;308469;308470;308471;308472;308473;308474;308475;308476;308477;308478;308479;308480;308481;308482;308483;308484 188891;188892 188891 1 QEAAAPAPAAK Unmodified 1023.5349 0.53490874 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 11.186 11.862 2 5.4162E-05 2208 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 128.6 122.94 15759000000 753010000 614970000 766940000 1061400000 1170900000 1122700000 849600000 808910000 760610000 141090000 148160000 138280000 463930000 430910000 413910000 35806000 28376000 37823000 890440000 844160000 752870000 1192100000 1170800000 1161800000 16551 133 16036 308485;308486;308487;308488;308489;308490;308491;308492;308493;308494;308495;308496;308497;308498;308499;308500;308501;308502;308503;308504;308505;308506;308507;308508;308509;308510;308511;308512;308513;308514;308515;308516;308517 188893;188894;188895;188896;188897;188898;188899;188900;188901;188902;188903;188904;188905;188906 188903 12 QEAAPAAAPAPAAGVK Unmodified 1418.7518 0.75177781 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 4 3 4 3 3 3 2 4 3 3 3 3 2 2 2 3 3 3 4 4 4 19.156 19.21 2;3 4.2991E-08 6011 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 151.13 127.77 24484000000 753210000 700070000 634840000 3106900000 2961300000 2749100000 809690000 844460000 855290000 161100000 164010000 245480000 544130000 442240000 438800000 95532000 63866000 62187000 804040000 937440000 993950000 1719700000 2175200000 2222000000 16552 133 16037 308518;308519;308520;308521;308522;308523;308524;308525;308526;308527;308528;308529;308530;308531;308532;308533;308534;308535;308536;308537;308538;308539;308540;308541;308542;308543;308544;308545;308546;308547;308548;308549;308550;308551;308552;308553;308554;308555;308556;308557;308558;308559;308560;308561;308562;308563;308564;308565;308566;308567;308568;308569;308570;308571;308572;308573;308574;308575;308576;308577;308578;308579;308580;308581;308582;308583;308584;308585;308586;308587;308588;308589;308590;308591 188907;188908;188909;188910;188911;188912;188913;188914;188915;188916;188917;188918;188919;188920;188921;188922;188923;188924;188925;188926;188927;188928;188929;188930;188931;188932;188933;188934;188935;188936;188937;188938;188939;188940;188941;188942;188943;188944;188945;188946;188947;188948;188949;188950;188951;188952;188953;188954;188955;188956;188957;188958;188959;188960;188961;188962;188963;188964;188965;188966;188967;188968 188941 62 QEAAPAAAPAPAAGVKEVNVPDIGGDEVEVTEVMVK Unmodified 3557.7923 0.79232858 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1 46.034 44.363 3;4 7.086E-08 15826 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 83.874 82.171 89362000 0 0 0 27771000 23875000 19010000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7861000 4926100 5918800 16553 133 16038 308592;308593;308594;308595;308596;308597;308598;308599;308600;308601 188969;188970;188971;188972;188973;188974;188975 188970 7 QEAEADDYSYDLLR Unmodified 1686.7373 0.73730954 1277 P25894 loiP Metalloprotease LoiP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 37.626 35.924 2 1.765E-05 17305 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.163 93.518 41712000 8487200 5754400 4555800 0 0 0 0 0 0 0 852670 1207500 0 3160600 1777700 0 0 0 5943500 4265800 5706900 0 0 0 16554 1277 16039 308602;308603;308604;308605;308606;308607;308608;308609;308610;308611 188976;188977;188978;188979 188978 1 QEANNDILK Unmodified 1043.5247 0.52473799 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.618 15.208 2 0.00031698 4900 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 116.37 87.21 891050000 104310000 91048000 84495000 4951900 4386100 4918900 88616000 94580000 85354000 9153500 8758700 7999700 47773000 42863000 44990000 1150700 0 0 42504000 43187000 39422000 15452000 12182000 12953000 16555 1653 16040 308612;308613;308614;308615;308616;308617;308618;308619;308620;308621;308622;308623;308624;308625;308626;308627;308628;308629;308630;308631;308632;308633 188980;188981;188982;188983;188984;188985;188986;188987;188988;188989;188990;188991;188992;188993;188994;188995;188996;188997 188987 18 QECYDLFVQAAQQEK Unmodified 1855.8411 0.8410631 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.842 37.168 2 1.6475E-06 18161 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.63 105.91 58888000 4757300 3604200 4455300 0 0 0 7509800 3874600 3590100 0 0 0 4769300 3790700 3752900 0 0 0 7520200 7020800 4243300 0 0 0 16556 1759 16041 308634;308635;308636;308637;308638;308639;308640;308641;308642;308643;308644;308645 188998 188998 1 QEDANFSNNAMAEAFK Unmodified 1785.7628 0.76281278 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.726 33.99 2 1.2983E-30 16358 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 231.67 231.5 2118200000 344740000 334330000 280610000 1836900 2572000 2025200 115300000 120690000 117610000 4218400 2025700 0 158920000 127900000 123430000 0 0 0 185720000 191690000 0 0 4574200 0 16557 990 16042 308646;308647;308648;308649;308650;308651;308652;308653;308654;308655;308656;308657;308658;308659;308660;308661;308662;308663;308664 188999;189000;189001;189002;189003;189004;189005;189006;189007;189008;189009;189010;189011;189012 189007 13 QEDSHLQR Unmodified 1011.4734 0.47337112 1881 P77148 ydhS Uncharacterized protein YdhS yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 7.2383 7.9708 2 0.025091 1650 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 65.038 39.144 23082000 9969000 7337600 5775200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16558 1881 16043 308665;308666;308667 189013 189013 1 QEEHIELIASENYTSPR Unmodified 2014.9596 0.95959833 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 3 3 3 2 3 2 3 2 3 29.266 27.954 2;3 1.1631E-39 12864 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 318.49 315.54 1059800000 144150000 150620000 145840000 0 0 0 99385000 89832000 82085000 0 0 0 47336000 54354000 40502000 0 0 0 72285000 65169000 68260000 0 0 0 16559 391 16044 308668;308669;308670;308671;308672;308673;308674;308675;308676;308677;308678;308679;308680;308681;308682;308683;308684;308685;308686;308687;308688;308689;308690;308691;308692;308693;308694;308695;308696;308697 189014;189015;189016;189017;189018;189019;189020;189021;189022;189023;189024;189025;189026;189027;189028 189023 13 QEEVHVR Unmodified 895.45118 0.45117911 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 10.549 11.314 2 0.0013649 2661 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.3 114.37 676990000 47422000 58159000 48792000 0 0 0 54712000 41246000 48394000 0 1558300 0 57923000 43768000 49860000 0 0 0 79636000 69397000 76124000 0 0 0 16560 1236 16045 308698;308699;308700;308701;308702;308703;308704;308705;308706;308707;308708;308709;308710 189029;189030;189031;189032;189033;189034;189035;189036;189037;189038 189033 10 QEEVINIANIQSR Unmodified 1512.7896 0.78961988 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.168 32.57 2 1.2096E-18 15945 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 178.67 142.24 112730000 0 4601700 0 1960900 1856800 2143400 0 11817000 12323000 0 0 3753500 8012200 6974200 6138300 0 0 0 13119000 14969000 17025000 2391500 2832300 2808600 16561 997 16046 308711;308712;308713;308714;308715;308716;308717;308718;308719;308720;308721;308722;308723;308724;308725;308726;308727 189039;189040;189041;189042;189043;189044;189045;189046;189047;189048;189049 189040 7 QEFDVIGTVNALEQR Unmodified 1717.8635 0.8635131 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 2 2 1 1 1 1 48.924 47.583 2;3 5.8234E-24 22402 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 178.95 168.77 120340000 10574000 8310300 6901500 0 1198300 0 9371300 8446500 10027000 0 0 0 10599000 8151400 8529100 0 0 0 11793000 15639000 10798000 0 0 0 16562 1649 16047 308728;308729;308730;308731;308732;308733;308734;308735;308736;308737;308738;308739;308740;308741;308742;308743 189050;189051;189052;189053;189054;189055;189056;189057;189058;189059;189060 189058 11 QEGDDEQAVR Unmodified 1145.4949 0.49489442 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.765 11.581 2 4.8232E-05 2794 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 136.8 120.64 275970000 22055000 13785000 17722000 0 0 0 19719000 25407000 20210000 0 0 0 25641000 28200000 24975000 0 0 0 26023000 26786000 25447000 0 0 0 16563 558 16048 308744;308745;308746;308747;308748;308749;308750;308751;308752;308753;308754;308755 189061;189062;189063;189064 189061 4 QEGEWPTGLR Unmodified 1171.5622 0.56218613 39 P00803 lepB Signal peptidase I yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 28.055 26.933 2 0.12242 11726 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 51.066 42.534 83744000 0 3179300 3910700 0 0 0 0 7794600 7503100 0 0 0 9570300 8952400 8121500 0 0 0 12988000 10332000 11392000 0 0 0 16564 39 16049 308756;308757;308758;308759;308760;308761;308762;308763;308764;308765 189065;189066 189066 0 QEGNVILFIDELHTMVGAGK Unmodified 2170.1092 0.10923946 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 54.675 53.151 3 3.7991E-10 26304 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.99 105.25 522540000 152730000 0 142480000 0 0 0 0 107480000 116800000 0 0 0 0 0 0 0 0 0 3052300 0 0 0 0 0 16565 1662 16050 308766;308767;308768;308769;308770 189067;189068 189067 2 QEGTQKSVIDTMQTR Unmodified 1720.8414 0.84139745 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 23.932 23.055 3 0.13742 9887 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 22.475 11.659 74956000 11068000 11455000 12157000 580010 0 0 0 6458500 7413700 882260 0 0 8935700 6820600 0 0 0 0 9184200 0 0 0 0 0 16566 1914 16051 308771;308772;308773;308774;308775;308776;308777;308778;308779;308780 189069 189069 1 QEIECQNQEYSLLLSIK Unmodified 2094.0303 0.030320436 16 CON__P35527 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 47.908 46.08 2 9.8153E-25 18498 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 267.67 259.56 115630000 0 0 0 1810100 0 0 0 0 0 32859000 35956000 33892000 0 0 0 0 0 0 0 0 0 2677700 4688200 3743700 + 16567 16 16052 308781;308782;308783;308784;308785;308786;308787 189070;189071 189070 2 QEIGQIVGCSR Unmodified 1245.6136 0.61356977 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 0 By MS/MS By MS/MS 1 1 21.978 22.004 2 0.013309 9126 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 69.672 45.152 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16568 734 16053 308788;308789 189072;189073 189072 2 QEISVMR Unmodified 861.43784 0.43783723 759 P0ACZ4 evgA Positive transcription regulator EvgA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.887 17.645 2 0.00047536 6327 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 153.15 81.789 215550000 17076000 14459000 12873000 0 0 0 20984000 25000000 21493000 0 0 0 12571000 10378000 13532000 0 0 0 22254000 25393000 19533000 0 0 0 16569 759 16054 308790;308791;308792;308793;308794;308795;308796;308797;308798;308799;308800;308801 189074;189075;189076;189077;189078;189079 189075 6 QEITAALWK Unmodified 1058.576 0.57604528 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.95 32.502 2 0.00078026 14804 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 101.43 84.045 681520000 144740000 132300000 108900000 0 0 0 18998000 20885000 18646000 0 0 0 28896000 31319000 34227000 0 0 0 48341000 48097000 46173000 0 0 0 16570 340 16055 308802;308803;308804;308805;308806;308807;308808;308809;308810;308811;308812;308813 189080;189081;189082;189083;189084;189085;189086;189087;189088;189089 189088 10 QEIVTDPLEQEVNK Unmodified 1640.8257 0.82573061 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 33.58 32.02 2;3 2.0397E-35 15182 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 266.12 263.81 814820000 31068000 33712000 31930000 5737200 5419200 5848000 57576000 57249000 49319000 18923000 16680000 20234000 54137000 50749000 46926000 4385400 2705500 3046400 90831000 85156000 95430000 15931000 16169000 15655000 16571 927 16056 308814;308815;308816;308817;308818;308819;308820;308821;308822;308823;308824;308825;308826;308827;308828;308829;308830;308831;308832;308833;308834;308835;308836;308837;308838;308839;308840;308841;308842;308843;308844;308845;308846;308847;308848;308849;308850;308851;308852;308853;308854;308855;308856;308857;308858 189090;189091;189092;189093;189094;189095;189096;189097;189098;189099;189100;189101;189102;189103;189104;189105;189106;189107;189108;189109;189110;189111;189112;189113 189109 24 QEIVTDPLEQEVNKNVFMGK Unmodified 2317.1624 0.16239724 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.807 40.241 3 2.1604E-18 15977 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 143.39 140.59 87854000 0 0 0 5036600 4495100 3912500 0 0 0 9303800 8312900 8765200 0 0 0 6335200 3902300 6810600 0 0 0 10662000 9558200 10760000 16572 927 16057 308859;308860;308861;308862;308863;308864;308865;308866;308867;308868;308869;308870 189114;189115;189116;189117;189118;189119;189120;189121;189122;189123 189117 10 QEKEDSETFQGEGHFSVDEK Unmodified 2325.0033 0.0033136416 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 19.066 19.189 3 0.0047379 5795 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 47.397 47.106 44455000 0 0 0 0 0 0 0 0 0 7569400 4774300 6354900 0 0 0 2943600 0 0 4785600 4416400 3187700 2819500 4183500 3420400 16573 1057 16058 308871;308872;308873;308874;308875;308876;308877;308878;308879;308880 189124;189125;189126;189127;189128;189129;189130 189127 7 QELANAR Unmodified 800.41407 0.41406533 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By MS/MS 1 11.077 11.376 2 0.048092 2244 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 60.39 18.887 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16574 73 16059 308881 189131 189131 1 QELDLYICLR Unmodified 1321.67 0.67002202 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 47.009 45.593 2 0.0016248 22206 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.308 83.009 14484000 4557100 5732400 0 0 0 0 0 1846200 0 0 0 0 0 0 0 0 0 0 2348300 0 0 0 0 0 16575 179 16060 308882;308883;308884;308885 189132;189133 189133 0 QELDLYICLRPVR Unmodified 1673.8923 0.89231081 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.376 39.71 2;3 9.6868E-50 19757 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 285.28 269.74 1917900000 284410000 262790000 223500000 0 0 0 150540000 134230000 110280000 0 0 0 83149000 82159000 81062000 0 0 0 171620000 171390000 162780000 0 0 0 16576 179 16061 308886;308887;308888;308889;308890;308891;308892;308893;308894;308895;308896;308897;308898;308899;308900;308901;308902;308903;308904;308905;308906;308907;308908;308909 189134;189135;189136;189137;189138;189139;189140;189141;189142;189143;189144;189145;189146;189147;189148;189149;189150;189151;189152;189153;189154;189155;189156;189157;189158;189159;189160;189161;189162 189137 29 QELEINQQLSQR Unmodified 1484.7583 0.75831975 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.387 24.092 2 2.951E-10 7849 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 210.27 200.04 51456000 0 0 0 5640700 7807500 7488300 2215900 0 3529000 3265300 2868100 3599500 2186000 0 0 0 0 0 4387700 0 0 4537400 3930400 0 16577 1899 16062 308910;308911;308912;308913;308914;308915;308916;308917;308918;308919;308920;308921 189163;189164;189165;189166;189167;189168 189167 6 QELFHLIR Unmodified 1054.5924 0.59236404 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1 2 2 2 1 1 1 2 1 1 1 2 2 2 1 1 1 26.304 25.203 3 0.032107 13808 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.917 53.977 452240000 11677000 9509700 4559500 55144000 48624000 48935000 26759000 28476000 30184000 1435900 1827500 1036200 13805000 10905000 11459000 0 0 622000 26265000 26541000 27440000 24217000 19127000 23692000 16578 180 16063 308922;308923;308924;308925;308926;308927;308928;308929;308930;308931;308932;308933;308934;308935;308936;308937;308938;308939;308940;308941;308942;308943;308944;308945;308946;308947;308948;308949;308950;308951;308952 189169;189170;189171;189172;189173;189174;189175;189176;189177;189178;189179;189180;189181;189182 189170 14 QELHAGGR Unmodified 866.43586 0.4358634 519 P0A9H1 mug G/U mismatch-specific DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 2 1 1 1 1 1 1 1 1 1 1 1 7.2399 7.7284 2 0.00084046 1640 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 120.92 92.667 74440000 17825000 22855000 23226000 0 0 748740 0 0 0 140110 129360 139100 0 4057300 0 165300 385070 201690 0 4515300 0 0 0 51741 16579 519 16064 308953;308954;308955;308956;308957;308958;308959;308960;308961;308962;308963;308964;308965;308966;308967 189183;189184;189185;189186;189187 189185 5 QELLTTLQNLSNDELLPVAR Unmodified 2266.2169 0.21687565 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 54.604 53.156 2;3 3.5947E-68 26406 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 227.46 224.17 941020000 148310000 132700000 142240000 0 0 0 70824000 67997000 63255000 0 0 0 48319000 42853000 47451000 0 0 0 64313000 56654000 56111000 0 0 0 16580 43 16065 308968;308969;308970;308971;308972;308973;308974;308975;308976;308977;308978;308979;308980;308981;308982;308983;308984;308985;308986;308987;308988;308989;308990;308991 189188;189189;189190;189191;189192;189193 189190 6 QELMDSAR Unmodified 948.43348 0.43348014 1794 P75949 nagZ Beta-hexosaminidase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 13.78 14.655 2 0.00014869 4412 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 155.82 131.84 155570000 19683000 0 0 0 0 0 14447000 16806000 13584000 0 0 0 13255000 11006000 11684000 0 0 0 16370000 18762000 19972000 0 0 0 16581 1794 16066 308992;308993;308994;308995;308996;308997;308998;308999;309000;309001 189194;189195 189195 1 QELNYLWR Unmodified 1120.5665 0.56654322 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 35.953 34.582 2 0.0009293 11701 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 117.16 99.125 20572000 0 0 0 0 0 0 0 0 0 2858800 1948400 1659700 0 0 0 4814800 4735400 3414800 0 0 0 0 0 1140200 16582 1338 16067 309002;309003;309004;309005;309006;309007;309008 189196;189197;189198 189198 3 QELRDEGK Unmodified 973.48287 0.48287317 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 2 2 2 1 1 1 4.9856 5.9369 2 0.00079219 1125 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 137.9 40.302 448490000 0 0 0 1808000 0 1257500 33019000 0 37655000 0 0 0 92268000 79593000 78669000 0 0 0 40813000 39324000 44082000 0 0 0 16583 192 16068 309009;309010;309011;309012;309013;309014;309015;309016;309017;309018;309019;309020;309021 189199;189200;189201 189201 3 QELVSMLMDR Oxidation (M) 1236.5842 0.58424348 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 8 7 6 8 7 6 6 6 4 35.803 34.353 2 3.7577E-05 13932 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 145.25 140.64 528900000 0 0 0 0 0 0 1510600 0 0 81257000 64416000 52623000 0 0 0 88706000 61488000 62811000 0 0 0 40617000 42657000 32810000 16584 1616 16069 309022;309023;309024;309025;309026;309027;309028;309029;309030;309031;309032;309033;309034;309035;309036;309037;309038;309039;309040;309041;309042;309043;309044;309045;309046;309047;309048;309049;309050;309051;309052;309053;309054;309055;309056;309057;309058;309059;309060;309061;309062;309063;309064;309065;309066;309067;309068;309069;309070;309071;309072;309073;309074;309075;309076;309077;309078;309079;309080 189202;189203;189204;189205;189206;189207;189208;189209;189210;189211;189212;189213;189214;189215;189216;189217;189218;189219;189220;189221;189222;189223;189224;189225;189226;189227;189228;189229;189230;189231;189232;189233;189234;189235;189236;189237;189238;189239;189240;189241;189242;189243;189244;189245;189246;189247;189248;189249;189250;189251;189252;189253;189254;189255;189256;189257 189224 568;569 48 QELVSMLMDR Unmodified 1220.5893 0.58932885 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 2 44.905 43.296 2 8.3043E-17 16145 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 226.47 217.05 9999100000 25503000 22880000 22259000 816900 1024000 1026100 26961000 20986000 21238000 852840000 785940000 800580000 24698000 23729000 26904000 1991900000 1661500000 2097200000 33993000 34270000 33200000 463080000 507780000 518800000 16585 1616 16069 309081;309082;309083;309084;309085;309086;309087;309088;309089;309090;309091;309092;309093;309094;309095;309096;309097;309098;309099;309100;309101;309102;309103;309104;309105;309106;309107;309108;309109 189258;189259;189260;189261;189262;189263;189264;189265;189266;189267;189268;189269;189270;189271;189272;189273;189274;189275;189276;189277;189278;189279;189280;189281;189282 189270 25 QENIHYECFGPHK Unmodified 1657.7307 0.73072479 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 2 1 1 15.682 16.472 2;3 3.0349E-05 5660 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.22 101.49 142410000 14629000 17294000 13701000 0 0 0 11866000 8411800 10885000 0 0 0 9154400 10086000 9614900 0 0 0 12307000 13439000 11018000 0 0 0 16586 1246 16070 309110;309111;309112;309113;309114;309115;309116;309117;309118;309119;309120;309121;309122;309123;309124;309125 189283;189284;189285;189286;189287;189288;189289;189290 189289 7 QENQTDEAPK Unmodified 1158.5153 0.51529551 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 10.174 10.975 2 0.025484 2388 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 58.981 53.322 11224000 3468300 3887700 2300500 0 0 0 0 0 0 0 0 0 725830 842090 0 0 0 0 0 0 0 0 0 0 16587 1664 16071 309126;309127;309128;309129;309130 189291 189291 1 QENVYYYITTLNENYHMPAMPEGAEEGIR Unmodified 3431.5438 0.54384181 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 3 2 1 2 2 2 2 2 2 2 2 3 2 3 3 3 51.736 50.575 3;4;5 3.7066E-68 20106 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 270.72 270.72 17052000000 385920000 343240000 327090000 2284800000 1707100000 1821400000 468800000 434130000 441240000 133530000 33628000 138900000 293390000 332070000 327360000 59771000 50670000 54010000 666160000 627150000 452670000 1980500000 1805500000 1882700000 16588 939 16072 309131;309132;309133;309134;309135;309136;309137;309138;309139;309140;309141;309142;309143;309144;309145;309146;309147;309148;309149;309150;309151;309152;309153;309154;309155;309156;309157;309158;309159;309160;309161;309162;309163;309164;309165;309166;309167;309168;309169;309170;309171;309172;309173;309174;309175;309176;309177;309178;309179;309180;309181;309182;309183;309184;309185 189292;189293;189294;189295;189296;189297;189298;189299;189300;189301;189302;189303;189304;189305;189306;189307;189308;189309;189310;189311;189312;189313;189314;189315;189316;189317;189318;189319;189320;189321;189322;189323;189324;189325;189326;189327;189328;189329;189330;189331;189332;189333;189334;189335;189336;189337;189338;189339;189340;189341;189342;189343 189313 52 QENVYYYITTLNENYHMPAMPEGAEEGIR Oxidation (M) 3447.5388 0.53875643 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 4 4 5 1 1 1 1 1 1 1 3 2 4 4 3 49.526 48.146 3;4 3.2435E-16 19071 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 143.5 143.17 496470000 0 2853400 0 93528000 90670000 70793000 0 0 4563600 1994000 2343500 3467500 0 3377400 3873800 0 0 0 6416300 14375000 10403000 61291000 66117000 60400000 16589 939 16072 309186;309187;309188;309189;309190;309191;309192;309193;309194;309195;309196;309197;309198;309199;309200;309201;309202;309203;309204;309205;309206;309207;309208;309209;309210;309211;309212;309213;309214;309215;309216;309217;309218;309219;309220;309221;309222 189344;189345;189346;189347;189348;189349;189350;189351;189352;189353;189354;189355;189356;189357;189358;189359;189360;189361;189362 189345 441;442 19 QENVYYYITTLNENYHMPAMPEGAEEGIR 2 Oxidation (M) 3463.5337 0.53367105 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 2 0 By MS/MS By matching By matching 1 1 1 45.731 43.978 3 0.00082842 15725 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 59.046 58.954 17593000 0 0 0 6688300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3985500 0 6919500 16590 939 16072 309223;309224;309225 189363 189363 441;442 1 QENVYYYITTLNENYHMPAMPEGAEEGIRK Unmodified 3559.6388 0.63880483 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 4 4 1 1 3 3 2 3 2 1 2 2 2 2 1 1 1 4 3 4 47.993 46.655 3;4;5;6 1.1432E-31 18457 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 190.79 190.31 13453000000 96762000 84260000 114830000 1397500000 2183400000 1947500000 78662000 64600000 95341000 219960000 212090000 150450000 56662000 59805000 54762000 84990000 69814000 72131000 113150000 137590000 117820000 1911200000 1939000000 2191100000 16591 939 16073 309226;309227;309228;309229;309230;309231;309232;309233;309234;309235;309236;309237;309238;309239;309240;309241;309242;309243;309244;309245;309246;309247;309248;309249;309250;309251;309252;309253;309254;309255;309256;309257;309258;309259;309260;309261;309262;309263;309264;309265;309266;309267;309268;309269;309270;309271;309272;309273;309274;309275;309276;309277;309278;309279 189364;189365;189366;189367;189368;189369;189370;189371;189372;189373;189374;189375;189376;189377;189378;189379;189380;189381;189382;189383;189384;189385;189386;189387;189388;189389;189390;189391;189392;189393;189394;189395;189396;189397;189398;189399;189400;189401;189402;189403;189404;189405;189406;189407;189408;189409;189410;189411;189412;189413;189414;189415;189416;189417;189418;189419 189392 56 QENVYYYITTLNENYHMPAMPEGAEEGIRK 2 Oxidation (M) 3591.6286 0.62863407 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 2 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 40.607 38.687 4 4.6347E-06 15120 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 74.766 73.124 77755000 0 0 0 16159000 15225000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18237000 14411000 13723000 16592 939 16073 309280;309281;309282;309283;309284 189420;189421;189422;189423;189424 189420 441;442 5 QENVYYYITTLNENYHMPAMPEGAEEGIRK Oxidation (M) 3575.6337 0.63371945 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 4 6 3 1 1 1 1 3 4 4 44.639 42.82 3;4 3.8589E-17 16713 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 154.14 153.99 470940000 0 0 0 78757000 91332000 75673000 3230300 0 0 2867500 3170500 2395300 0 0 0 0 0 0 0 0 0 55331000 84242000 73938000 16593 939 16073 309285;309286;309287;309288;309289;309290;309291;309292;309293;309294;309295;309296;309297;309298;309299;309300;309301;309302;309303;309304;309305;309306;309307;309308;309309;309310;309311;309312 189425;189426;189427;189428;189429;189430;189431;189432;189433;189434;189435;189436;189437;189438;189439;189440;189441;189442;189443;189444;189445;189446;189447 189425 441;442 23 QEPLHQVWLATK Unmodified 1448.7776 0.77759863 1312 P27838 cyaY Protein CyaY yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.978 25.83 2 1.3423E-11 11827 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 182.54 170.82 172730000 18240000 15288000 11278000 0 0 0 16882000 16851000 18476000 0 0 0 8801000 10243000 8048700 0 0 0 18194000 17577000 12852000 0 0 0 16594 1312 16074 309313;309314;309315;309316;309317;309318;309319;309320;309321;309322;309323;309324 189448;189449;189450;189451;189452;189453;189454;189455 189451 8 QEPYENVTLDVEEQHQGSVMQALGER Unmodified 2985.3774 0.37742841 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.524 39.848 3 4.1808E-41 18763 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 216.8 207.59 393650000 30447000 26064000 22040000 0 0 0 25438000 28004000 18293000 0 0 0 44533000 36099000 37228000 0 0 0 42943000 45431000 37129000 0 0 0 16595 1388 16075 309325;309326;309327;309328;309329;309330;309331;309332;309333;309334;309335;309336 189456;189457;189458;189459;189460;189461;189462;189463;189464;189465;189466;189467 189465 12 QEQLENLVNHYLFDK Unmodified 1888.9319 0.93192702 55 P00944 xylA Xylose isomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.873 48.477 3 0.0061181 23528 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 60.324 56.222 34701000 8596700 7854100 6826300 0 0 0 3145200 3584600 0 0 0 0 0 1457100 1923600 0 0 0 0 0 1313900 0 0 0 16596 55 16076 309337;309338;309339;309340;309341;309342;309343;309344 189468;189469 189469 0 QEQQEQEAAELQAVTAIAEGR Unmodified 2298.1088 0.10878177 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 48.086 46.874 2;3 2.0386E-173 17736 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 535.72 528.83 6294200000 76357000 75865000 65639000 0 0 0 17586000 16051000 15307000 278260000 272310000 272650000 67115000 63221000 53504000 1359500000 1122400000 1192400000 93847000 92095000 84396000 366080000 380860000 328750000 16597 384 16077 309345;309346;309347;309348;309349;309350;309351;309352;309353;309354;309355;309356;309357;309358;309359;309360;309361;309362;309363;309364;309365;309366;309367;309368;309369;309370;309371;309372;309373;309374;309375;309376;309377;309378;309379;309380;309381;309382;309383 189470;189471;189472;189473;189474;189475;189476;189477;189478;189479;189480;189481;189482;189483;189484;189485;189486;189487;189488;189489;189490;189491;189492;189493;189494;189495;189496;189497;189498;189499;189500;189501;189502;189503;189504 189472 35 QEQQEQEAAELQAVTAIAEGRR Unmodified 2454.2099 0.20989279 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 3 3 3 3 3 41.14 39.677 2;3;4 1.6281E-75 15587 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 308.54 284.31 2191800000 0 0 0 0 0 0 0 0 0 92593000 90336000 74473000 0 0 0 600810000 399650000 416360000 0 0 0 156890000 183640000 177040000 16598 384 16078 309384;309385;309386;309387;309388;309389;309390;309391;309392;309393;309394;309395;309396;309397;309398;309399;309400;309401;309402;309403;309404;309405;309406;309407;309408;309409 189505;189506;189507;189508;189509;189510;189511;189512;189513;189514;189515;189516;189517;189518;189519 189516 14 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEK Unmodified 4418.1224 0.1223895 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 49.562 48.126 4 8.4268E-19 19254 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 112.46 112.19 176950000 15644000 14990000 11995000 0 0 0 18898000 15856000 17927000 10969000 7901700 5813400 0 20301000 12392000 0 0 0 0 19862000 0 0 0 4401900 16599 883 16079 309410;309411;309412;309413;309414;309415;309416;309417;309418;309419;309420;309421;309422 189520;189521;189522 189521 3 QESGVALR Unmodified 858.45593 0.45593014 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 2 2 2 2 2 1 2 12.27 13.142 2 0.00094389 3894 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.54 84.072 2772800000 257570000 232550000 239890000 0 1100100 1857800 303220000 304250000 251880000 0 0 0 214470000 195150000 179140000 0 0 0 192290000 217420000 181990000 0 0 0 16600 874 16080 309423;309424;309425;309426;309427;309428;309429;309430;309431;309432;309433;309434;309435;309436;309437;309438;309439;309440;309441;309442;309443;309444 189523;189524;189525;189526;189527;189528;189529;189530;189531;189532;189533 189525 10 QEVCDNER Unmodified 1048.4244 0.42437202 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 8.2581 9.0169 2 0.0017368 2375 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 106.36 106.36 45657000 15899000 12510000 8889800 0 0 0 2951700 1908100 1805300 0 0 0 0 0 0 0 0 0 0 0 1693600 0 0 0 16601 1887 16081 309445;309446;309447;309448;309449;309450;309451 189534;189535;189536 189536 3 QEVHGNGLSSYPHPK Unmodified 1648.7958 0.79576789 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 3 3 3 3 3 12.467 13.106 2;3;4 5.8014E-46 2741 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 288.53 283.63 5844300000 166660000 150950000 147350000 695480000 637060000 705640000 161330000 146080000 160660000 49887000 52630000 52300000 103310000 97433000 77343000 13816000 15034000 15306000 153770000 156700000 170050000 652060000 665040000 598470000 16602 939 16082 309452;309453;309454;309455;309456;309457;309458;309459;309460;309461;309462;309463;309464;309465;309466;309467;309468;309469;309470;309471;309472;309473;309474;309475;309476;309477;309478;309479;309480;309481;309482;309483;309484;309485;309486;309487;309488;309489;309490;309491;309492;309493;309494;309495;309496;309497;309498;309499;309500;309501;309502;309503;309504;309505;309506;309507;309508;309509;309510;309511;309512;309513;309514;309515;309516;309517;309518;309519 189537;189538;189539;189540;189541;189542;189543;189544;189545;189546;189547;189548;189549;189550;189551;189552;189553;189554;189555;189556;189557;189558;189559;189560;189561;189562;189563;189564;189565;189566;189567;189568;189569;189570;189571;189572;189573;189574;189575;189576;189577 189561 41 QEVTTEGGLDVAGQR Unmodified 1558.7587 0.75871368 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.27 22.17 2 2.5267E-20 9422 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 259.55 242.52 336200000 25736000 19457000 20168000 785560 0 0 35485000 30567000 30716000 0 1723200 0 27269000 23754000 22848000 0 0 0 35082000 29458000 33147000 0 0 0 16603 319 16083 309520;309521;309522;309523;309524;309525;309526;309527;309528;309529;309530;309531;309532;309533 189578;189579;189580;189581;189582;189583;189584 189578 7 QEWQEENTLHEWDEGEFQLEPPLDTEEGR Unmodified 3569.5495 0.54951535 1269 P25738 msyB Acidic protein MsyB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.362 48.93 3 1.6775E-41 24216 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 213.57 213.57 453600000 78153000 52207000 58183000 0 0 0 38524000 31572000 29912000 14262000 15335000 20455000 9757500 7075700 9926000 0 0 0 16619000 15338000 11735000 15106000 14399000 15038000 16604 1269 16084 309534;309535;309536;309537;309538;309539;309540;309541;309542;309543;309544;309545;309546;309547;309548;309549;309550;309551 189585;189586;189587;189588;189589;189590;189591;189592;189593;189594;189595;189596;189597;189598 189588 14 QEYDQALADAQQANAAVTAAK Unmodified 2176.0396 0.039639568 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 2 2 2 35.466 33.69 2;3 1.9378E-27 15660 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 230.86 222.54 396100000 13370000 20619000 19986000 8028700 6488300 6772600 23578000 21653000 22053000 26203000 25102000 24188000 17587000 20477000 14474000 0 0 0 28083000 29820000 26674000 13854000 14498000 12586000 16605 826 16085 309552;309553;309554;309555;309556;309557;309558;309559;309560;309561;309562;309563;309564;309565;309566;309567;309568;309569;309570;309571;309572;309573;309574;309575;309576;309577;309578;309579;309580;309581;309582;309583;309584;309585;309586 189599;189600;189601;189602;189603;189604;189605;189606;189607;189608;189609;189610;189611;189612;189613;189614;189615;189616;189617 189615 19 QEYEQLIAK Unmodified 1120.5764 0.57643921 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 23.515 22.774 2 3.7348E-06 7991 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 175.38 164.67 587630000 0 0 0 3888800 6821200 7497700 0 0 0 171020000 143770000 136880000 0 0 0 3557400 2272000 2228400 0 0 0 34903000 31191000 43595000 + 16606 16 16086 309587;309588;309589;309590;309591;309592;309593;309594;309595;309596;309597;309598;309599 189618;189619;189620;189621;189622;189623;189624;189625;189626;189627;189628;189629 189622 12 QEYTSLLYIPSQAPWDMWNR Unmodified 2497.1736 0.17363063 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 2 2 2 2 2 2 55.047 53.608 2;3 1.052E-46 26448 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 269.4 266.97 357780000 22814000 34704000 11660000 1133700 1245100 1544100 10275000 8498200 19150000 0 0 0 37409000 35251000 35185000 0 0 0 51061000 46433000 41416000 0 0 0 16607 295 16087 309600;309601;309602;309603;309604;309605;309606;309607;309608;309609;309610;309611;309612;309613;309614;309615;309616;309617;309618;309619;309620;309621;309622 189630;189631;189632;189633;189634;189635 189631 6 QFAEEVQTENR Unmodified 1349.6212 0.62115757 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 16.467 17.134 2 7.1146E-06 6040 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 150.27 139.74 38797000 7700300 6828700 7509800 0 0 0 4116500 8444300 0 0 0 0 0 0 0 0 0 0 4197000 0 0 0 0 0 16608 1295 16088 309623;309624;309625;309626;309627;309628 189636 189636 1 QFAQTPALYR Unmodified 1193.6193 0.61930707 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.34 25.507 2 4.0534E-07 11468 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.09 138.93 305680000 30179000 31475000 27148000 0 0 0 32474000 24325000 26752000 0 0 0 14397000 16306000 13431000 6431900 3774800 3032400 28238000 22903000 24817000 0 0 0 16609 731 16089 309629;309630;309631;309632;309633;309634;309635;309636;309637;309638;309639;309640;309641;309642;309643 189637;189638;189639;189640;189641;189642;189643;189644;189645;189646;189647;189648;189649;189650;189651 189646 6 QFAVTLR Unmodified 833.47594 0.4759373 308 P0A742 mscL Large-conductance mechanosensitive channel yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.482 25.17 2 0.025243 11081 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.852 49.721 165490000 18215000 15572000 19211000 1269500 1072900 1334100 19926000 0 21842000 2678400 2507300 2305100 10803000 0 0 0 0 0 19122000 16261000 12334000 0 0 1037100 16610 308 16090 309644;309645;309646;309647;309648;309649;309650;309651;309652;309653;309654;309655;309656;309657;309658;309659 189652;189653;189654;189655;189656 189656 5 QFDALLQEQSAQR Unmodified 1532.7583 0.75831975 1704 P65367 yqcA Uncharacterized protein YqcA yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.131 29.775 2 3.2133E-25 14261 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 247.96 238.04 333730000 44999000 36605000 24933000 0 0 0 38663000 30595000 36114000 0 0 0 14936000 17286000 18584000 0 0 0 22170000 23578000 25269000 0 0 0 16611 1704 16091 309660;309661;309662;309663;309664;309665;309666;309667;309668;309669;309670;309671 189657;189658;189659;189660 189658 4 QFDDMQR Unmodified 938.39162 0.39161532 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.612 15.197 2 0.0040887 4945 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 105.27 105.27 173490000 9190000 8867500 6560500 2549600 3034800 2618400 9519700 11283000 9865600 12311000 11482000 11862000 10247000 8819600 7533200 2969200 2667200 3454300 10945000 14010000 13702000 0 0 0 16612 1009 16092 309672;309673;309674;309675;309676;309677;309678;309679;309680;309681;309682;309683;309684;309685;309686;309687;309688;309689;309690;309691;309692 189661 189661 1 QFDLDQAFSAK Unmodified 1268.6037 0.60371659 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.222 37.585 2 7.8991E-05 18249 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.86 115.64 227910000 24240000 23835000 19300000 661990 0 1253800 0 15758000 16473000 0 0 0 16484000 11944000 13466000 0 0 0 29660000 28257000 26580000 0 0 0 16613 1221 16093 309693;309694;309695;309696;309697;309698;309699;309700;309701;309702;309703;309704;309705 189662;189663;189664;189665;189666;189667;189668 189666 6 QFDYLVNSMR Oxidation (M) 1287.5918 0.59177169 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 5 5 6 31.333 31.367 2 0.00017796 13187 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 126.82 126.56 179080000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75980000 54274000 48822000 0 0 0 0 0 0 16614 36 16094 309706;309707;309708;309709;309710;309711;309712;309713;309714;309715;309716;309717;309718;309719;309720;309721 189669;189670;189671;189672;189673;189674;189675;189676;189677;189678;189679;189680;189681;189682;189683;189684 189674 23 14 QFDYLVNSMR Unmodified 1271.5969 0.59685707 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 37.479 35.928 2;3 8.5784E-07 13174 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 135.43 132.11 8042900000 29734000 29032000 31493000 2423900 2370100 2316100 28199000 30719000 26233000 11510000 10420000 12269000 22456000 20850000 27782000 2697500000 2458700000 2433000000 51188000 47744000 37246000 9792200 10439000 9537200 16615 36 16094 309722;309723;309724;309725;309726;309727;309728;309729;309730;309731;309732;309733;309734;309735;309736;309737;309738;309739;309740;309741;309742;309743;309744;309745;309746 189685;189686;189687;189688;189689;189690;189691;189692;189693;189694;189695;189696;189697;189698;189699;189700;189701;189702 189687 14 QFEADNIDQMEAVGR Unmodified 1721.7679 0.76789816 1037 P0C0K3 rdoA Protein RdoA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 34.66 33.31 2 0.0007194 15253 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 82.543 78.656 24688000 0 0 0 0 0 0 0 0 0 0 0 0 4051200 3006600 3779100 0 0 0 5651900 8199700 0 0 0 0 16616 1037 16095 309747;309748;309749;309750;309751 189703;189704;189705 189705 0 QFEQQGK Unmodified 863.41373 0.41373097 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 10.176 11.081 2 0.0021148 2343 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 118.01 98.164 105200000 0 0 0 0 0 0 0 0 0 0 0 0 14991000 14192000 6715600 0 0 0 25725000 19977000 23604000 0 0 0 16617 1052 16096 309752;309753;309754;309755;309756;309757;309758 189706;189707;189708;189709;189710 189708 4 QFFDDGMHLPSPYGIR Unmodified 1878.8723 0.87230365 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 1 2 2 1 1 1 1 2 1 2 1 45.429 43.936 2;3 1.385E-19 21813 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 202.18 189.68 1344500000 3234900 0 5094600 0 0 0 128060000 115800000 114350000 209990000 187650000 186190000 40032000 30663000 29576000 25351000 17486000 18625000 51321000 54284000 53269000 22053000 29705000 21737000 16618 1088 16097 309759;309760;309761;309762;309763;309764;309765;309766;309767;309768;309769;309770;309771;309772;309773;309774;309775;309776;309777;309778;309779;309780;309781;309782;309783;309784;309785;309786;309787;309788;309789 189711;189712;189713;189714;189715;189716;189717;189718;189719;189720;189721;189722;189723;189724;189725;189726;189727;189728;189729;189730;189731;189732 189723 22 QFFDEHQATYPTR Unmodified 1638.7427 0.74266969 1027 P0AGL2 tdcF Putative reactive intermediate deaminase TdcF yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.756 22.934 3 0.011004 9602 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 45.28 38.396 105080000 4611500 5534900 8652900 0 0 0 8049000 9759500 7666900 0 0 0 10754000 13881000 12680000 0 0 0 7194400 6193900 10101000 0 0 0 16619 1027 16098 309790;309791;309792;309793;309794;309795;309796;309797;309798;309799;309800;309801 189733;189734;189735;189736 189735 2 QFFMFGPR Unmodified 1028.4902 0.49020716 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 44.828 42.939 2 0.0020054 17182 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 104.11 99.256 21774000 0 0 0 0 0 0 0 2685500 2456200 2561800 2748900 2591000 0 0 0 0 0 0 2446300 2881600 3402200 0 0 0 16620 1877 16099 309802;309803;309804;309805;309806;309807;309808;309809 189737;189738;189739 189739 3 QFGENYVQEGVDK Unmodified 1511.6892 0.68923713 1709 P67080 yggS UPF0001 protein YggS yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 25.481 24.551 2 1.2594E-07 10564 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 155 147.12 125800000 9918300 11004000 8952300 0 0 0 0 0 0 0 0 0 0 19448000 17657000 0 0 0 29701000 29116000 0 0 0 0 16621 1709 16100 309810;309811;309812;309813;309814;309815;309816 189740 189740 1 QFGLTPLGHFTVNPEIQPGAQR Unmodified 2406.2444 0.24442781 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.802 42.287 3 4.6789E-07 19907 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 105.67 90.581 550560000 32841000 33401000 30204000 0 0 0 46122000 46399000 38981000 0 0 0 46941000 39798000 45398000 0 0 0 65175000 60101000 65197000 0 0 0 16622 1509 16101 309817;309818;309819;309820;309821;309822;309823;309824;309825;309826;309827;309828 189741;189742 189741 2 QFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQR Unmodified 3650.7915 0.79149792 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 55.134 53.727 4 4.9465E-12 26572 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.81 110.17 154980000 57063000 49736000 48186000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16623 1173 16102 309829;309830;309831 189743 189743 1 QFHEANNMTDALAALSAAVAAQLPCR Unmodified 2769.3327 0.33266724 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.884 53.419 3 2.6384E-41 26256 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 220.13 213.18 937260000 95834000 92027000 87078000 0 0 0 80132000 78972000 73107000 0 0 0 69770000 71234000 63752000 0 0 0 82704000 74409000 68240000 0 0 0 16624 94 16103 309832;309833;309834;309835;309836;309837;309838;309839;309840;309841;309842;309843 189744;189745;189746;189747;189748;189749;189750;189751;189752;189753;189754;189755 189752 12 QFHHGDGQSFNAEDFDDIFSSIFGQHAR Unmodified 3208.4023 0.40233803 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 1 2 52.263 51.09 4;5 2.589E-23 25184 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 176.23 175.54 793500000 48416000 57517000 39535000 0 5924700 0 149800000 172870000 158530000 22253000 14522000 12164000 17363000 15260000 19606000 1859800 2807500 3256300 20269000 10293000 21262000 0 0 0 16625 1440 16104 309844;309845;309846;309847;309848;309849;309850;309851;309852;309853;309854;309855;309856;309857;309858;309859;309860;309861;309862;309863;309864;309865;309866;309867;309868;309869;309870;309871;309872;309873;309874;309875;309876 189756;189757;189758;189759;189760;189761;189762;189763;189764 189764 9 QFIDGLALPEEEK Unmodified 1487.7508 0.75077476 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 42.977 41.36 2 5.1906E-06 19391 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 127.83 113.71 1232100000 155910000 131790000 136140000 0 0 0 66792000 64397000 52413000 0 0 1018700 91072000 92765000 91934000 0 0 0 117910000 121360000 108570000 0 0 0 16626 638 16105 309877;309878;309879;309880;309881;309882;309883;309884;309885;309886;309887;309888;309889 189765;189766;189767 189766 3 QFLSLMEKPDVDHIEGLSPAISIEQK Unmodified 2923.5001 0.50010973 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 2 2 2 2 2 1 1 1 2 2 2 2 2 1 2 1 1 1 47.389 46.192 3;4 6.8584E-16 16646 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 151.06 148.65 472740000 8824600 31276000 31995000 0 0 0 22890000 26267000 22257000 4524700 3704000 4947300 17809000 0 15068000 75769000 72965000 91571000 4929500 24947000 3449600 4024100 0 5519000 16627 222 16106 309890;309891;309892;309893;309894;309895;309896;309897;309898;309899;309900;309901;309902;309903;309904;309905;309906;309907;309908;309909;309910;309911;309912;309913;309914;309915;309916;309917;309918;309919 189768;189769;189770;189771;189772;189773 189773 6 QFMNELNSGLDLR Unmodified 1535.7402 0.74022685 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 1 1 1 1 2 1 2 1 1 1 41.882 40.042 2;3 2.3821E-12 19872 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 227.14 222.84 3055200000 46162000 42444000 38951000 0 0 0 491590000 459990000 392760000 0 2490000 2751400 278250000 254090000 262850000 0 0 0 275360000 266450000 238810000 2251200 0 0 16628 654 16107 309920;309921;309922;309923;309924;309925;309926;309927;309928;309929;309930;309931;309932;309933;309934;309935;309936;309937;309938 189774;189775;189776;189777;189778;189779;189780;189781;189782;189783;189784;189785;189786 189776 13 QFMNELNSGLDLR Oxidation (M) 1551.7351 0.73514147 654 P0ABF6 cdd Cytidine deaminase yes yes 0 1 0 By MS/MS 1 36.857 34.907 2 6.735E-05 17094 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.568 82.628 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16629 654 16107 309939 189787 189787 358 1 QFNANFEK Unmodified 996.46649 0.46649483 1938 P77754 spy Spheroplast protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.447 18.889 2 0.00093956 7011 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.73 90.617 262740000 23396000 22014000 16156000 0 878170 1023200 31989000 33480000 29400000 3254800 2437600 2014300 13522000 15971000 10410000 0 0 0 20564000 16322000 18949000 957120 0 0 16630 1938 16108 309940;309941;309942;309943;309944;309945;309946;309947;309948;309949;309950;309951;309952;309953;309954;309955;309956;309957 189788;189789;189790;189791;189792;189793;189794;189795;189796;189797;189798;189799 189794 12 QFNDSLR Unmodified 878.42463 0.42463001 1069 P11447 argH Argininosuccinate lyase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.497 16.305 2 0.13862 5655 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.835 37.595 94199000 9210000 7519500 7201900 0 0 0 11207000 9170000 7467200 0 0 0 5286700 4671600 4786500 0 0 0 10278000 7977200 9422900 0 0 0 16631 1069 16109 309958;309959;309960;309961;309962;309963;309964;309965;309966;309967;309968;309969 189800 189800 1 QFNYSAEELDSVIR Unmodified 1669.7948 0.79476484 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 42.513 40.806 2 1.3918E-11 19780 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 177.44 167.13 481550000 82088000 69727000 78589000 0 0 0 42169000 41038000 38762000 0 0 0 23717000 23415000 20647000 0 0 0 31050000 0 30348000 0 0 0 16632 218 16110 309970;309971;309972;309973;309974;309975;309976;309977;309978;309979;309980 189801;189802;189803;189804;189805;189806;189807;189808;189809 189806 9 QFPNGIEPHGTDALR Unmodified 1650.8114 0.81141795 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.227 25.071 3 0.00076084 11423 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 52.823 44.508 122100000 14581000 8788200 0 0 0 0 12700000 10591000 10862000 0 0 0 7341200 8430700 8795200 0 0 0 14046000 12892000 13068000 0 0 0 16633 158 16111 309981;309982;309983;309984;309985;309986;309987;309988;309989;309990;309991;309992 189810;189811;189812;189813;189814;189815;189816;189817 189810 8 QFPNIDNAYMELGTNR Unmodified 1881.8679 0.86794655 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 45.639 44.26 2;3 9.6451E-24 21362 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 207.95 206.2 1258800000 284290000 263670000 259620000 0 0 0 20997000 23609000 21169000 0 0 0 94646000 81604000 79644000 0 0 0 39504000 42495000 47499000 0 0 0 16634 877 16112 309993;309994;309995;309996;309997;309998;309999;310000;310001;310002;310003;310004;310005;310006;310007;310008;310009;310010;310011;310012 189818;189819;189820;189821;189822;189823;189824;189825;189826;189827;189828;189829;189830;189831;189832 189826 15 QFQEALSR Unmodified 977.49304 0.49304393 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.946 17.402 2 5.0958E-05 6170 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 170.87 154.57 1007600000 26585000 24046000 25910000 0 0 0 124430000 116670000 111610000 47999000 47699000 20040000 53161000 50825000 55931000 17678000 11062000 11682000 81372000 91950000 85522000 3403500 0 0 16635 30 16113 310013;310014;310015;310016;310017;310018;310019;310020;310021;310022;310023;310024;310025;310026;310027;310028;310029;310030;310031;310032 189833;189834;189835;189836;189837;189838;189839;189840;189841;189842;189843;189844;189845;189846;189847;189848;189849;189850 189845 18 QFSGTQPLYTLDGDGTLTNNQSGVK Unmodified 2640.2667 0.26673897 69 P02916 malF Maltose transport system permease protein MalF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.122 39.151 3 4.4059E-10 19129 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 112.88 111.06 112750000 0 0 0 0 0 0 6122800 7485800 6892300 6679600 6506400 5601600 7803800 9128700 8538700 0 0 0 9618100 9429000 12282000 5530300 5252300 5880200 16636 69 16114 310033;310034;310035;310036;310037;310038;310039;310040;310041;310042;310043;310044;310045;310046;310047 189851;189852;189853;189854;189855;189856;189857;189858;189859 189857 9 QFSLNLR Unmodified 876.48175 0.48175096 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.85 29.364 2 0.00087141 14043 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 142.63 104.26 1939900000 178250000 145920000 137770000 0 1031800 725930 260380000 216610000 236510000 0 1100300 1399400 101360000 115100000 92195000 0 0 0 144350000 156070000 151130000 0 0 0 16637 1545 16115 310048;310049;310050;310051;310052;310053;310054;310055;310056;310057;310058;310059;310060;310061;310062;310063 189860;189861;189862;189863;189864;189865;189866;189867;189868;189869;189870;189871 189861 12 QFTDDLIAR Unmodified 1077.5455 0.54547343 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.437 29.885 2 0.0012119 13970 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 90.308 80.229 243970000 15111000 13573000 0 5727400 4350800 4153800 10619000 11764000 11064000 2337500 0 0 18216000 19733000 12443000 0 0 0 37279000 36705000 32436000 2620600 3473600 2364700 16638 1343 16116 310064;310065;310066;310067;310068;310069;310070;310071;310072;310073;310074;310075;310076;310077;310078;310079;310080;310081 189872;189873;189874;189875;189876;189877;189878;189879 189876 7 QFTINVGR Unmodified 933.50321 0.50321468 1637 P61316 lolA Outer-membrane lipoprotein carrier protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 26.611 25.483 2 0.00011523 11771 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 158.12 141.56 629030000 0 0 0 0 0 0 79177000 73919000 77510000 0 0 0 64479000 56868000 60298000 0 0 0 74820000 82762000 59196000 0 0 0 16639 1637 16117 310082;310083;310084;310085;310086;310087;310088;310089;310090 189880;189881 189880 2 QFTTVVADSGDIESIR Unmodified 1736.8581 0.85809337 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 37.762 36.092 2;3 4.1921E-24 17525 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 218.06 182.84 1386900000 251990000 216870000 199080000 0 0 0 153670000 150690000 170060000 0 0 0 32683000 30482000 31401000 0 0 0 51025000 51760000 47238000 0 0 0 16640 401 16118 310091;310092;310093;310094;310095;310096;310097;310098;310099;310100;310101;310102;310103;310104;310105;310106;310107;310108;310109;310110;310111;310112;310113 189882;189883;189884;189885;189886;189887;189888;189889;189890;189891;189892;189893;189894;189895;189896;189897;189898 189891 15 QFVACQMTPAK Unmodified 1279.6053 0.60531327 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.537 21.474 2 1.2765E-05 9023 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.02 159.9 272330000 28187000 0 0 365940 375130 733200 47204000 48029000 45359000 2121600 1310700 1964700 24272000 0 0 4640400 3849600 3642100 46377000 0 0 4291600 4925500 4686400 16641 124 16119 310114;310115;310116;310117;310118;310119;310120;310121;310122;310123;310124;310125;310126;310127;310128;310129;310130;310131;310132 189899;189900;189901;189902;189903;189904;189905;189906;189907;189908;189909;189910;189911 189903 12 QFVDDLVEK Unmodified 1091.5499 0.5498901 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.014 29.505 2 0.003201 11433 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 82.426 70.657 189800000 0 0 0 1360700 1344600 1342200 50362000 51342000 61186000 3622700 2762100 3467000 0 0 0 3649600 1986300 1826700 0 0 0 2154100 1589300 1806200 16642 1117 16120 310133;310134;310135;310136;310137;310138;310139;310140;310141;310142;310143;310144;310145;310146;310147;310148;310149;310150;310151;310152 189912;189913;189914;189915;189916;189917;189918;189919;189920;189921;189922 189913 11 QFVEAAHESGK Unmodified 1201.5728 0.57275081 1555 P42599 ygjR Uncharacterized oxidoreductase YgjR yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.421 12.208 3 0.15942 3216 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 20.096 16.423 107290000 19859000 24803000 21840000 0 0 0 7704800 8214700 9705700 0 0 0 0 0 6700200 0 0 0 5349300 0 3112700 0 0 0 16643 1555 16121 310153;310154;310155;310156;310157;310158;310159;310160;310161 189923 189923 1 QFVEVIIAPSASEEALK Unmodified 1829.9775 0.97748023 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.54 44.101 2 1.5033E-08 21508 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.39 146.87 559880000 159270000 157080000 132090000 0 0 0 7605700 9505400 8443000 0 0 0 12581000 10235000 10426000 0 0 0 14871000 19266000 18505000 0 0 0 16644 1111 16122 310162;310163;310164;310165;310166;310167;310168;310169;310170;310171;310172;310173 189924;189925;189926 189925 3 QFVFGGECETPVR Unmodified 1524.7031 0.70311306 1231 P23917 mak Fructokinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 33.486 32.057 2 1.5487E-07 15547 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.35 150.05 274550000 32402000 30982000 31815000 0 0 0 34280000 31177000 30010000 0 0 0 14359000 14297000 16228000 0 0 0 0 19834000 19170000 0 0 0 16645 1231 16123 310174;310175;310176;310177;310178;310179;310180;310181;310182;310183;310184 189927;189928;189929;189930;189931;189932;189933;189934 189928 8 QFVFGGECETPVRK Unmodified 1652.7981 0.79807608 1231 P23917 mak Fructokinase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.452 23.446 3 0.0069638 10731 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 45.863 37.686 63472000 11226000 3355400 9048800 0 0 0 8202700 9251100 7807500 0 0 0 0 0 0 0 0 0 3796800 5952500 4831900 0 0 0 16646 1231 16124 310185;310186;310187;310188;310189;310190;310191;310192;310193 189935;189936 189935 2 QFWAHQVER Unmodified 1199.5836 0.58359027 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 17.32 17.5 2 0.00077595 4965 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 101.54 94.647 28790000 0 0 0 0 0 0 3245400 0 0 1714200 1406300 1438700 0 0 0 0 0 0 0 10298000 0 3807900 3986500 2892800 16647 1435 16125 310194;310195;310196;310197;310198;310199;310200;310201 189937;189938;189939 189939 3 QGADIVFGSAQR Unmodified 1247.6258 0.62584901 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.35 25.252 2 8.9172E-07 11285 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 152.04 144.67 1596900000 108220000 88932000 93759000 6805600 6605400 6636600 171160000 172980000 167040000 7145500 6661600 6971300 88287000 96546000 89141000 4676700 2101100 2756500 147890000 157900000 143010000 6712000 7132800 7793500 16648 1409 16126 310202;310203;310204;310205;310206;310207;310208;310209;310210;310211;310212;310213;310214;310215;310216;310217;310218;310219;310220;310221;310222;310223;310224;310225 189940;189941;189942;189943;189944;189945;189946;189947;189948;189949 189945 7 QGADQQLGK Unmodified 943.47231 0.47230849 1202 P22939 ispA Farnesyl diphosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.602 11.429 2 0.00097679 2732 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.367 75.668 118900000 14946000 16078000 11149000 0 0 0 0 0 0 0 0 0 8733900 8422600 0 0 0 0 20447000 19382000 19742000 0 0 0 16649 1202 16127 310226;310227;310228;310229;310230;310231;310232;310233 189950;189951;189952 189952 3 QGAEEIYR Unmodified 964.46141 0.46140945 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 13.873 14.675 2 0.0027006 3506 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 98.299 62.419 37700000 5256500 3584200 4626600 6088500 7490600 8646700 0 0 0 0 0 0 0 0 0 0 2007100 0 0 0 0 0 0 0 16650 114 16128 310234;310235;310236;310237;310238;310239;310240 189953;189954;189955 189953 3 QGAFIAR Unmodified 761.41842 0.41842242 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.545 15.355 2 0.0063224 4784 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 95.957 65.289 2186900000 293760000 312110000 295620000 1234100 1290500 1278600 153190000 149710000 130620000 0 0 0 121390000 110280000 87532000 0 0 0 175540000 178570000 174760000 0 0 0 16651 512 16129 310241;310242;310243;310244;310245;310246;310247;310248;310249;310250;310251;310252;310253;310254;310255 189956;189957;189958;189959;189960;189961;189962;189963;189964;189965 189964 10 QGAPTDLPK Unmodified 925.4869 0.48689592 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 1 1 2 2 2 1 1 1 1 2 2 1 1 1 14.592 15.192 1;2 0.00073823 3834 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 102.51 92.376 1039700000 87042000 68093000 73270000 10207000 9790900 10980000 69178000 64598000 69735000 35374000 32491000 28678000 54094000 48150000 46117000 24741000 18955000 20384000 73492000 72334000 71129000 16871000 18446000 15516000 16652 1050 16130 310256;310257;310258;310259;310260;310261;310262;310263;310264;310265;310266;310267;310268;310269;310270;310271;310272;310273;310274;310275;310276;310277;310278;310279;310280;310281;310282;310283;310284;310285;310286;310287;310288;310289;310290;310291 189966;189967;189968;189969;189970;189971;189972;189973;189974;189975;189976;189977;189978;189979;189980;189981;189982;189983;189984;189985;189986;189987 189967 21 QGCTIVQPLDMEVGAGTSHPMTCLR Unmodified 2757.2707 0.27066061 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.597 37.981 3 2.6578E-23 18820 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 179.33 172.77 2437900000 227990000 182380000 184470000 22534000 21750000 22749000 143270000 144820000 147300000 70925000 78736000 70261000 142220000 117980000 124070000 29327000 20208000 21029000 193100000 183810000 168200000 43179000 36346000 41190000 16653 61 16131 310292;310293;310294;310295;310296;310297;310298;310299;310300;310301;310302;310303;310304;310305;310306;310307;310308;310309;310310;310311;310312;310313;310314;310315 189988;189989;189990;189991;189992;189993;189994;189995;189996;189997;189998;189999;190000;190001;190002;190003;190004;190005;190006;190007 189995 20 QGDDLHIETQNVAPPDSR Unmodified 1990.9344 0.93444622 1407 P33030 yeiR Uncharacterized protein YeiR yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.307 23.364 3 0.12306 10511 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 32.716 23.432 140510000 11094000 9099900 10665000 0 0 0 13557000 13743000 12259000 0 0 1128800 5453100 6344300 4500300 0 0 0 16355000 17197000 16770000 0 1247600 1091100 16654 1407 16132 310316;310317;310318;310319;310320;310321;310322;310323;310324;310325;310326;310327;310328;310329;310330 190008 190008 0 QGDLICLDGK Unmodified 1117.5438 0.54375887 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 2 2 2 28.441 27.161 2 0.00031552 12359 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.06 105.4 3898200000 441380000 545090000 451980000 0 0 0 147090000 142770000 138030000 1198200 1218300 1446100 189450000 188110000 160790000 712840 0 0 512860000 510160000 465890000 0 0 0 16655 392 16133 310331;310332;310333;310334;310335;310336;310337;310338;310339;310340;310341;310342;310343;310344;310345;310346;310347;310348;310349;310350;310351;310352 190009;190010;190011;190012;190013;190014;190015 190012 6 QGEEDFLAFSR Unmodified 1297.5939 0.59388018 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 39.867 38.023 2 1.595E-19 17696 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 225.87 221.71 373520000 14438000 19662000 13964000 0 0 503570 0 18943000 15596000 2835600 2669500 2526700 16715000 13038000 14379000 0 0 0 27122000 21186000 29634000 57033000 50785000 52492000 16656 1433 16134 310353;310354;310355;310356;310357;310358;310359;310360;310361;310362;310363;310364;310365;310366;310367;310368;310369;310370;310371;310372 190016;190017;190018;190019;190020;190021;190022;190023;190024;190025;190026;190027 190027 11 QGEPDPELNTSLK Unmodified 1426.694 0.69398816 413 P0A8A2 yeeN Probable transcriptional regulatory protein YeeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.551 22.83 2 8.7187E-06 9855 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.9 109.85 1228800000 65551000 71520000 46504000 0 0 0 117470000 109300000 109270000 0 0 0 91357000 104150000 92280000 0 0 0 126700000 157730000 136940000 0 0 0 16657 413 16135 310373;310374;310375;310376;310377;310378;310379;310380;310381;310382;310383;310384 190028;190029;190030;190031;190032;190033;190034;190035;190036;190037 190031 6 QGEPLGLGHSILCAR Unmodified 1606.825 0.82495953 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 31.525 30.06 2;3 3.4165E-27 13521 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 238.98 235.09 1518300000 89055000 96124000 79707000 1756300 1689600 1443400 129860000 120020000 134860000 3141700 2583400 0 114660000 113510000 110610000 0 0 0 190400000 156130000 169570000 0 3194700 0 16658 583 16136 310385;310386;310387;310388;310389;310390;310391;310392;310393;310394;310395;310396;310397;310398;310399;310400;310401;310402;310403;310404;310405;310406;310407;310408;310409;310410;310411;310412;310413;310414 190038;190039;190040;190041;190042;190043;190044;190045;190046;190047;190048;190049;190050;190051;190052;190053;190054 190052 17 QGEVLVR Unmodified 799.4552 0.45520186 1303 P27431 roxA 50S ribosomal protein L16 arginine hydroxylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.101 14.731 2 0.028364 4650 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 68.7 36.635 518450000 0 0 36040000 0 0 0 0 0 0 1080400 0 0 93064000 93669000 85156000 0 0 0 0 101770000 100980000 3241700 2265200 1184300 16659 1303 16137 310415;310416;310417;310418;310419;310420;310421;310422;310423;310424 190055;190056;190057;190058;190059 190056 4 QGEVVGIVGESGSGK Unmodified 1401.71 0.70997257 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 22.475 21.904 2 0.11546 9202 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 52.863 45.464 48053000 12966000 10102000 9629500 3554400 5435700 2249400 4116300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16660 592 16138 310425;310426;310427;310428;310429;310430;310431 190060 190060 1 QGFAEPSLK Unmodified 975.50255 0.50254598 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.214 22.111 2 0.0011963 8974 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 90.709 82.478 1585100000 132290000 110470000 101490000 0 0 0 134410000 144770000 139090000 0 0 0 118760000 107710000 113870000 0 0 0 152420000 166010000 163870000 0 0 0 16661 63 16139 310432;310433;310434;310435;310436;310437;310438;310439;310440;310441;310442;310443 190061;190062;190063;190064;190065;190066;190067;190068;190069;190070 190067 10 QGFELDATHGTAIVLGEAGINPR Unmodified 2365.2026 0.20262257 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.944 44.442 3 2.1649E-10 21598 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 127.58 127.05 669430000 145160000 150580000 124350000 0 0 0 0 0 0 0 0 0 16284000 0 16480000 0 0 0 63588000 72508000 67776000 3885700 4893900 3924400 16662 65 16140 310444;310445;310446;310447;310448;310449;310450;310451;310452;310453;310454 190071;190072;190073;190074;190075;190076;190077;190078;190079;190080;190081;190082 190080 12 QGFFAVQQTCPHCQGR Unmodified 1919.8519 0.85191933 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.421 21.93 3 2.9822E-07 9155 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.07 108.77 289190000 19715000 16411000 20671000 6839000 6654700 6052500 16570000 14060000 12533000 12399000 12761000 12859000 7318900 8445200 5786300 6145900 5763900 5675900 19906000 21820000 21578000 10890000 9299000 9039800 16663 190 16141 310455;310456;310457;310458;310459;310460;310461;310462;310463;310464;310465;310466;310467;310468;310469;310470;310471;310472;310473;310474;310475;310476;310477;310478 190083;190084;190085;190086;190087;190088;190089;190090;190091;190092;190093;190094;190095;190096;190097;190098;190099;190100;190101;190102 190099 20 QGFVDLLADR Unmodified 1132.5877 0.58767259 1552 P41409 rihA Pyrimidine-specific ribonucleoside hydrolase RihA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.477 42.962 2 0.00064039 20820 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 89.886 72.79 63705000 5117600 6182500 4870700 0 0 0 6161300 6680900 5357400 0 0 0 3175200 3862400 3622200 0 0 0 5200200 6670800 6803500 0 0 0 16664 1552 16142 310479;310480;310481;310482;310483;310484;310485;310486;310487;310488;310489;310490 190103;190104;190105;190106;190107;190108 190106 4 QGGDPYLVMADFAAYVEAQK Unmodified 2172.0198 0.019755749 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 55.204 53.726 2;3 6.3409E-11 21718 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 131.54 128.44 483170000 6788500 14451000 13035000 0 0 0 47134000 17136000 36199000 27750000 28802000 24852000 37509000 33770000 35847000 0 0 0 58386000 45416000 49953000 0 3240000 2903500 16665 30 16143 310491;310492;310493;310494;310495;310496;310497;310498;310499;310500;310501;310502;310503;310504;310505;310506;310507;310508;310509;310510;310511;310512;310513;310514;310515;310516;310517;310518;310519;310520 190109;190110;190111;190112 190109 4 QGGSDVMSNTTR Unmodified 1251.5514 0.55136344 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 12.188 12.804 2 1.0405E-16 3562 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 205.32 193.83 103000000 9197300 9907100 9843700 0 0 0 23995000 22526000 24010000 0 1790300 1733900 0 0 0 0 0 0 0 0 0 0 0 0 16666 1413 16144 310521;310522;310523;310524;310525;310526;310527;310528 190113;190114 190114 2 QGGTLQLFR Unmodified 1018.556 0.55597854 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.378 29.923 2 0.00017664 11216 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 128.61 97.304 449980000 29123000 23044000 21806000 6664200 7698800 7004000 28932000 26886000 27951000 22338000 14451000 16081000 16433000 15943000 15754000 4912100 0 4711700 42280000 44643000 35537000 14265000 9932600 13589000 16667 252 16145 310529;310530;310531;310532;310533;310534;310535;310536;310537;310538;310539;310540;310541;310542;310543;310544;310545;310546;310547;310548;310549;310550;310551 190115;190116;190117;190118;190119;190120;190121;190122;190123;190124;190125;190126;190127;190128;190129;190130;190131;190132;190133;190134;190135 190124 21 QGGVWMPGDEVK Unmodified 1301.6074 0.60742176 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 31.304 29.876 2 1.9307E-05 14330 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 123.11 113.33 268410000 0 0 0 0 0 0 38775000 36618000 42825000 0 0 0 32926000 31744000 29657000 0 0 0 17871000 16692000 21305000 0 0 0 16668 1087 16146 310552;310553;310554;310555;310556;310557;310558;310559;310560 190136;190137;190138;190139;190140;190141;190142;190143 190137 8 QGGYHFDLK Unmodified 1063.5087 0.50869399 1312 P27838 cyaY Protein CyaY yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 2 2 1 1 1 2 2 2 1 14.985 15.602 2 0.009469 7746 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 72.928 55.688 455170000 42413000 39889000 32277000 0 0 0 40687000 35806000 38513000 1729600 0 0 26661000 42301000 33709000 1952200 1129000 1515100 39702000 36682000 39185000 1015800 0 0 16669 1312 16147 310561;310562;310563;310564;310565;310566;310567;310568;310569;310570;310571;310572;310573;310574;310575;310576;310577;310578;310579;310580;310581;310582;310583;310584;310585 190144;190145;190146;190147;190148 190146 5 QGIKPLKK Unmodified 910.59639 0.59638679 37 P00582 polA DNA polymerase I yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 9.0555 9.8394 2 0.0066793 2481 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.32 69.672 130730000 13192000 17366000 15142000 0 0 0 6605900 5541400 6419500 0 0 0 4675600 2733600 3408500 11896000 0 0 14669000 12222000 16861000 0 0 0 16670 37 16148 310586;310587;310588;310589;310590;310591;310592;310593;310594;310595;310596;310597;310598 190149;190150;190151;190152 190150 4 QGIPLDAGSWQAICDAAR Unmodified 1927.921 0.92104476 1342 P30178 ybiC Uncharacterized oxidoreductase YbiC yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 48.039 46.771 2 1.0248E-06 22789 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.83 104.55 164300000 52714000 50817000 49957000 0 0 0 0 0 0 0 0 0 0 0 10808000 0 0 0 0 0 0 0 0 0 16671 1342 16149 310599;310600;310601;310602 190153 190153 0 QGITSYSLVPFPGH Unmodified 1501.7565 0.75652884 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.465 46.075 2 3.771E-08 22407 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 147.51 144.99 457950000 43206000 39507000 34478000 0 0 0 29321000 29646000 26601000 0 0 0 37183000 32572000 33721000 0 0 0 52122000 50897000 48697000 0 0 0 16672 1736 16150 310603;310604;310605;310606;310607;310608;310609;310610;310611;310612;310613;310614 190154;190155;190156;190157;190158;190159;190160;190161;190162 190155 9 QGIVLATGGGSVK Unmodified 1185.6717 0.67173657 233 P0A6D7 aroK Shikimate kinase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.41 21.906 2 6.4429E-07 8880 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 143.24 122.54 813230000 71611000 68846000 62331000 0 0 0 69113000 64215000 79033000 0 0 0 56071000 53910000 54506000 0 0 0 83913000 77140000 72543000 0 0 0 16673 233 16151 310615;310616;310617;310618;310619;310620;310621;310622;310623;310624;310625;310626 190163;190164;190165;190166;190167;190168;190169;190170;190171;190172;190173;190174 190172 12 QGIWIEK Unmodified 872.4756 0.47560295 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.428 24.33 2 0.021916 10837 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 75.213 45.406 929500000 150220000 145080000 114360000 2294900 2481100 1683800 40166000 42820000 32496000 0 0 0 49895000 60318000 43305000 0 0 0 74524000 85205000 77720000 1820100 2165000 2954700 16674 696 16152 310627;310628;310629;310630;310631;310632;310633;310634;310635;310636;310637;310638;310639;310640;310641;310642;310643;310644 190175;190176;190177;190178 190176 4 QGLDSDAEK Unmodified 961.43525 0.43525428 858 P0AEG6 dsbC Thiol:disulfide interchange protein DsbC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 11.125 11.914 2 0.075891 3084 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.457 34.25 194620000 28933000 26463000 27882000 0 0 0 0 51226000 3845300 0 0 0 0 0 21040000 0 0 0 0 0 35232000 0 0 0 16675 858 16153 310645;310646;310647;310648;310649;310650;310651 190179;190180 190179 1 QGLEIISQCFDEAK Unmodified 1636.7767 0.77667193 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.819 39.956 2 5.1313E-20 19688 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 220.5 214.78 364730000 85730000 81138000 76274000 0 0 0 22430000 21766000 19355000 3883700 3914500 3824600 6454800 6586900 6414000 0 0 0 0 14450000 12505000 0 0 0 16676 1194 16154 310652;310653;310654;310655;310656;310657;310658;310659;310660;310661;310662;310663;310664;310665 190181;190182;190183;190184;190185;190186 190183 6 QGLEIISQCFDEAKQ Unmodified 1764.8352 0.83524944 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 1 1 1 1 1 41.411 39.717 2;3 3.1968E-20 19203 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 216.06 216.06 246230000 60649000 55916000 53532000 0 0 0 14879000 17189000 14653000 0 0 0 0 2827200 3601800 0 0 0 7700300 5361600 9921600 0 0 0 16677 1194 16155 310666;310667;310668;310669;310670;310671;310672;310673;310674;310675;310676;310677;310678;310679;310680;310681 190187;190188;190189;190190;190191 190191 4 QGLFLQR Unmodified 860.48684 0.48683634 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 26.618 25.21 2 0.025147 9121 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 71.949 54.183 19398000 0 0 0 0 0 0 0 0 0 5668300 5729200 6848400 0 0 0 0 0 1152300 0 0 0 0 0 0 16678 143 16156 310682;310683;310684;310685 190192;190193;190194 190194 3 QGLITLQDDELHINPAHSR Unmodified 2156.0974 0.097429219 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 1 2 2 1 2 2 2 1 1 2 1 1 32.732 31.158 3;4 1.0178E-05 14626 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 87.49 84.203 284090000 7506800 9532100 5167100 2762000 2329300 1950900 28051000 21861000 20940000 10669000 10437000 6448500 24307000 23168000 23435000 0 0 0 19025000 23179000 32410000 0 6010300 4905700 16679 324 16157 310686;310687;310688;310689;310690;310691;310692;310693;310694;310695;310696;310697;310698;310699;310700;310701;310702;310703;310704;310705;310706;310707;310708;310709;310710;310711;310712 190195;190196;190197;190198;190199;190200;190201;190202;190203;190204 190200 10 QGLLTVEK Unmodified 886.51238 0.51238239 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 21.146 21.376 2 0.031553 8366 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.673 35.566 911350000 853640000 12544000 0 0 0 0 20071000 6595800 8652600 0 0 0 3428500 0 0 0 0 0 6415000 0 0 0 0 0 16680 1444 16158 310713;310714;310715;310716;310717;310718;310719 190205 190205 1 QGLNAELTR Unmodified 1000.5302 0.53015772 1273 P25746 hflD High frequency lysogenization protein HflD yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 18.217 18.764 2 0.0022709 6999 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 85.731 61.775 46304000 6543100 5086800 0 1751500 1841100 1671600 0 0 0 1648600 0 0 5344600 0 0 0 0 0 7751100 5714100 8951700 0 0 0 16681 1273 16159 310720;310721;310722;310723;310724;310725;310726;310727;310728;310729 190206;190207;190208;190209 190207 4 QGLPDAIQAEVFLHLTESLAQSVTHIAVK Unmodified 3114.6713 0.67134923 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.634 54.161 4 1.9394E-06 27039 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.304 85.562 271470000 31583000 28894000 29234000 0 0 0 36831000 25295000 24389000 0 0 0 11529000 11938000 11969000 0 0 0 18540000 21868000 19404000 0 0 0 16682 1926 16160 310730;310731;310732;310733;310734;310735;310736;310737;310738;310739;310740;310741 190210 190210 1 QGMWLNADQQSR Unmodified 1432.6517 0.65174619 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.199 26.01 2 9.9509E-18 11207 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 223.87 221.36 1277100000 6917900 6001800 5402400 1865200 1628300 1761300 144730000 125670000 156720000 133030000 115960000 118640000 63713000 55815000 49348000 19098000 8206600 13438000 63569000 62295000 62881000 24713000 19988000 15694000 16683 1088 16161 310742;310743;310744;310745;310746;310747;310748;310749;310750;310751;310752;310753;310754;310755;310756;310757;310758;310759;310760;310761;310762;310763;310764;310765 190211;190212;190213;190214;190215;190216;190217;190218;190219;190220;190221;190222;190223;190224;190225;190226;190227 190227 17 QGMWLNADQQSR Oxidation (M) 1448.6467 0.64666081 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 2 2 1 1 1 1 21.546 21.405 2 0.00034526 7466 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 87.298 85.887 38414000 0 0 0 0 0 0 0 5362100 7324600 3638000 5782100 4295900 1900300 2568100 3068500 0 0 0 4474600 0 0 0 0 0 16684 1088 16161 310766;310767;310768;310769;310770;310771;310772;310773;310774;310775;310776;310777 190228;190229;190230;190231;190232;190233 190228 488 6 QGNALGWATAGGSGFR Unmodified 1548.7433 0.74333839 366 P0A7R9 rpsK 30S ribosomal protein S11 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 35.772 34.134 2;3 4.0898E-39 15764 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 253.76 236.29 4010600000 589140000 577050000 519560000 14875000 11258000 15405000 151760000 123310000 147900000 41938000 40372000 32176000 224210000 197160000 191310000 25703000 12951000 14018000 345200000 340630000 328870000 23065000 22950000 19765000 16685 366 16162 310778;310779;310780;310781;310782;310783;310784;310785;310786;310787;310788;310789;310790;310791;310792;310793;310794;310795;310796;310797;310798;310799;310800;310801;310802;310803;310804;310805;310806;310807;310808;310809;310810;310811;310812;310813;310814;310815;310816;310817 190234;190235;190236;190237;190238;190239;190240;190241;190242;190243;190244;190245;190246;190247;190248;190249;190250;190251;190252;190253;190254;190255;190256;190257;190258;190259;190260;190261;190262;190263;190264;190265;190266 190262 33 QGNEFGATTGR Unmodified 1136.521 0.52104959 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 13.132 13.859 2 2.4299E-26 4172 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 251.98 251.98 3102300000 308270000 288370000 312160000 0 0 0 273880000 298910000 266070000 0 0 0 0 0 292690000 0 0 546360 346110000 356860000 358390000 0 0 0 16686 333 16163 310818;310819;310820;310821;310822;310823;310824;310825;310826;310827;310828 190267;190268;190269;190270;190271;190272;190273;190274;190275;190276 190272 10 QGNLSSSGNQEGSQK Unmodified 1519.6863 0.68627702 20 CON__Q5D862 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 33.797 32.094 2 0.05323 15654 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 41.54 22.76 37671000 0 0 0 0 0 0 11592000 10949000 8128200 0 0 0 0 0 0 0 0 0 3852300 3150100 0 0 0 0 + 16687 20 16164 310829;310830;310831;310832;310833 190277 190277 1 QGNTELQQK Unmodified 1044.52 0.51998696 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.442 11.258 2 0.00027013 2620 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.46 95.007 1651800000 243790000 257690000 235470000 0 0 0 124550000 93674000 113120000 0 0 0 101970000 86495000 78973000 0 0 0 114710000 108640000 92695000 0 0 0 16688 1349 16165 310834;310835;310836;310837;310838;310839;310840;310841;310842;310843;310844;310845 190278;190279;190280;190281;190282;190283;190284;190285;190286;190287;190288 190283 11 QGPQIVVGTPGR Unmodified 1207.6673 0.6673199 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.924 22.337 2 3.0439E-05 9506 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.83 109.05 134440000 14736000 15957000 13115000 1621600 0 1659200 5678900 4725400 4691600 0 0 0 7480100 6253500 8520900 0 0 0 14396000 16168000 12903000 2445200 2303400 1788600 16689 544 16166 310846;310847;310848;310849;310850;310851;310852;310853;310854;310855;310856;310857;310858;310859;310860;310861;310862 190289;190290;190291;190292;190293;190294;190295;190296;190297;190298;190299 190293 9 QGQVATVLSAPAK Unmodified 1268.7089 0.70885036 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.671 21.705 2 4.3718E-05 8496 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.47 93.711 712260000 134200000 108640000 111140000 910780 1256800 1237200 29973000 27051000 28718000 0 0 0 29467000 30426000 23532000 0 0 0 69944000 63683000 52075000 0 0 0 16690 34 16167 310863;310864;310865;310866;310867;310868;310869;310870;310871;310872;310873;310874;310875;310876;310877 190300;190301;190302;190303;190304;190305;190306 190304 7 QGQVVESGLTDR Unmodified 1287.6419 0.64189301 1122 P16678 phnK Putative phosphonates utilization ATP-binding protein PhnK yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 17.235 17.747 2 0.049454 5058 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 43.297 35.925 29738000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3534000 0 0 0 7096500 6055900 6318700 2401500 2289900 2041900 16691 1122 16168 310878;310879;310880;310881;310882;310883;310884 190307 190307 1 QGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGK Unmodified 3926.9664 0.96636205 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.307 41.792 4;5 1.4655E-29 20362 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 175.42 174.17 1187400000 117030000 91679000 79991000 0 0 0 68457000 111380000 100800000 0 0 0 91656000 92114000 72121000 0 0 0 116320000 125690000 120210000 0 0 0 16692 253 16169 310885;310886;310887;310888;310889;310890;310891;310892;310893;310894;310895;310896;310897;310898;310899;310900;310901;310902;310903;310904;310905;310906;310907;310908 190308;190309;190310;190311;190312;190313;190314;190315;190316;190317;190318;190319;190320;190321;190322;190323;190324 190311 17 QGSGSGQSPGHGQR Unmodified 1338.6025 0.60248781 23 CON__Q86YZ3 yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 2 2 1 1 1 2 9.0583 9.2575 2;3 3.2699E-06 1521 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 143.79 139.49 59993000 0 0 0 0 0 0 612840 0 0 17110000 15345000 16568000 0 0 0 0 659890 529000 0 0 0 3896000 5272900 0 + 16693 23 16170 310909;310910;310911;310912;310913;310914;310915;310916;310917;310918;310919;310920 190325;190326;190327;190328;190329;190330;190331 190328 7 QGSGSGQSPSR Unmodified 1046.4741 0.4740994 23 CON__Q86YZ3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 9.303 9.5258 2 0.00030081 1612 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.584 88.215 8927700 0 0 0 0 0 0 0 0 0 2622100 2122900 1998800 0 0 0 0 0 0 0 0 0 769230 770730 643820 + 16694 23 16171 310921;310922;310923;310924;310925;310926 190332;190333;190334 190332 3 QGSVTEFLKPR Unmodified 1260.6826 0.68263561 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 3 2 2 1 1 2 2 2 23.982 23.094 2;3 1.0934E-13 8834 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 195.79 189.75 246100000 6842400 7021000 5338300 0 0 0 0 2544400 0 17615000 16704000 15513000 883390 0 0 41397000 36424000 35227000 2450500 0 1591100 20578000 17266000 18709000 16695 383 16172 310927;310928;310929;310930;310931;310932;310933;310934;310935;310936;310937;310938;310939;310940;310941;310942;310943;310944;310945;310946;310947;310948;310949;310950;310951;310952 190335;190336;190337;190338;190339;190340;190341;190342;190343;190344;190345;190346;190347 190336 13 QGTDAAMALAMGHVMLR Unmodified 1771.8532 0.85316489 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 2 2 1 1 1 2 1 2 2 2 2 42.366 40.674 2;3 7.9238E-19 16038 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 234.92 217.18 748210000 12919000 13020000 13193000 5304100 4082500 3497200 36095000 33697000 29789000 23172000 22278000 23118000 32828000 30567000 33792000 8284600 6509600 9452300 47788000 45149000 58286000 83340000 84942000 87103000 16696 205 16173 310953;310954;310955;310956;310957;310958;310959;310960;310961;310962;310963;310964;310965;310966;310967;310968;310969;310970;310971;310972;310973;310974;310975;310976;310977;310978;310979;310980;310981;310982;310983;310984 190348;190349;190350;190351;190352;190353;190354;190355;190356;190357;190358;190359;190360;190361;190362;190363;190364;190365;190366;190367;190368;190369;190370;190371 190357 24 QGTHQAMDDIR Unmodified 1270.5724 0.57243324 317 P0A784 orn Oligoribonuclease yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.841 12.674 2 1.1143E-08 3533 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.57 164.19 252230000 22588000 19855000 17262000 0 0 0 20568000 22488000 22724000 0 0 0 19728000 17554000 13433000 0 0 0 25136000 23953000 26940000 0 0 0 16697 317 16174 310985;310986;310987;310988;310989;310990;310991;310992;310993;310994;310995;310996 190372;190373;190374;190375;190376;190377;190378;190379;190380 190375 9 QGTHTAR Unmodified 769.3831 0.38309955 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 4.2243 4.9918 2 0.12812 721 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 48.756 33.535 17353000 2900200 3052100 3014900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2511000 2605000 3269400 0 0 0 16698 1814 16175 310997;310998;310999;311000;311001;311002 190381;190382 190381 2 QGTTCCMIPHLQIEK Unmodified 1814.8477 0.84774516 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 30.158 29.015 3 0.00016574 9221 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 71.98 65.817 50467000 0 0 0 0 779730 809170 0 0 0 0 2502100 1567600 0 0 0 13760000 9964500 19725000 0 0 0 0 0 1359900 16699 456 16176 311003;311004;311005;311006;311007;311008;311009;311010 190383;190384;190385 190384 3 QGVDADINGLR Unmodified 1156.5836 0.58364985 16 CON__P35527 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.791 23.843 2 7.4834E-20 8156 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 237.92 224.88 678860000 0 0 0 8647000 10352000 11242000 0 0 0 172740000 154750000 150980000 0 0 0 5655300 4159400 4950900 0 0 0 56159000 50815000 48416000 + 16700 16 16177 311011;311012;311013;311014;311015;311016;311017;311018;311019;311020;311021;311022 190386;190387;190388;190389;190390;190391;190392 190391 7 QGVDLNSIEWAHH Unmodified 1504.7059 0.70589025 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 2 2 2 1 33.707 32.38 2;3 1.6483E-17 15450 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 213.53 207.53 1822800000 222080000 209310000 204820000 4831000 3807500 4833300 133040000 116640000 116610000 0 0 0 104730000 111730000 101160000 1484400 1075800 2113800 161840000 159930000 157960000 0 0 4848900 16701 228 16178 311023;311024;311025;311026;311027;311028;311029;311030;311031;311032;311033;311034;311035;311036;311037;311038;311039;311040;311041;311042;311043;311044;311045;311046;311047;311048;311049;311050;311051;311052;311053 190393;190394;190395;190396;190397;190398;190399;190400;190401;190402;190403;190404;190405;190406;190407;190408;190409;190410;190411;190412;190413;190414;190415;190416;190417;190418;190419 190409 26 QGVLEEFGVTMIGATADAIDK Unmodified 2164.0722 0.07218525 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 55.034 53.589 2 7.588E-53 26693 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 265.43 253.37 164960000 34632000 31645000 29996000 0 0 0 0 0 0 0 0 0 0 0 3805600 0 0 0 20943000 23943000 19992000 0 0 0 16702 65 16179 311054;311055;311056;311057;311058;311059;311060 190420 190420 1 QGVLEEFGVTMIGATADAIDKAEDR Unmodified 2635.2799 0.27994619 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 2 1 1 1 1 2 2 54.74 53.328 3 1.2028E-22 26615 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.99 172.33 510540000 115980000 94276000 100040000 0 0 0 0 0 0 0 0 0 16753000 13787000 12154000 0 0 0 61312000 51511000 44728000 0 0 0 16703 65 16180 311061;311062;311063;311064;311065;311066;311067;311068;311069;311070;311071;311072 190421;190422;190423;190424;190425 190423 5 QGVLLLNTVLTVR Unmodified 1424.8715 0.87149901 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.542 50.295 2 3.9289E-10 24976 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 179.57 179.57 196590000 12764000 12249000 10116000 0 0 0 26138000 20327000 18659000 0 0 0 12114000 12207000 11879000 0 0 0 19230000 23216000 17692000 0 0 0 16704 1078 16181 311073;311074;311075;311076;311077;311078;311079;311080;311081;311082;311083;311084 190426;190427;190428;190429;190430;190431;190432;190433 190426 8 QGYPIGCK Unmodified 921.43784 0.43783723 1644 P62399 rplE 50S ribosomal protein L5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.377 14.975 2 0.0017297 4856 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.42 93.984 2322200000 241650000 232540000 220410000 18670000 18868000 19166000 87181000 90201000 77420000 49501000 41031000 42654000 113100000 114490000 106960000 44527000 35386000 40547000 228500000 215880000 204490000 27187000 25774000 26031000 16705 1644 16182 311085;311086;311087;311088;311089;311090;311091;311092;311093;311094;311095;311096;311097;311098;311099;311100;311101;311102;311103;311104;311105;311106;311107;311108 190434;190435;190436;190437;190438;190439;190440;190441;190442;190443;190444;190445;190446;190447;190448;190449;190450;190451;190452;190453 190448 20 QHEFSHATGELTALLSAIK Unmodified 2052.064 0.064003825 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 3 3 3 1 1 3 2 2 1 1 1 2 3 3 1 1 45.207 43.812 2;3;4 5.4644E-46 21346 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 302.63 268.24 1523000000 92928000 94374000 98819000 0 0 1803700 164450000 172110000 132980000 0 2890400 4659500 117360000 66837000 73241000 2813300 2392300 2593400 130090000 204070000 154520000 2319600 0 1770500 16706 499 16183 311109;311110;311111;311112;311113;311114;311115;311116;311117;311118;311119;311120;311121;311122;311123;311124;311125;311126;311127;311128;311129;311130;311131;311132;311133;311134;311135;311136;311137;311138;311139;311140;311141;311142;311143;311144;311145;311146;311147;311148;311149 190454;190455;190456;190457;190458;190459;190460;190461;190462;190463;190464;190465;190466;190467;190468;190469;190470;190471;190472;190473;190474;190475;190476;190477;190478;190479;190480;190481;190482;190483 190466 30 QHGHEEFIYLSGGILEVQPGNVTVLADTAIR Unmodified 3362.7259 0.725904 236 P0A6E6 atpC ATP synthase epsilon chain yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 2 2 1 1 1 1 2 2 2 2 2 2 1 1 1 51.801 50.495 3;4 3.5857E-09 20548 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 92.788 88.099 346290000 0 0 0 6477000 6058400 4252200 36088000 32063000 22231000 16951000 13848000 14477000 20954000 29330000 22727000 0 0 0 32062000 32640000 23425000 12322000 8703800 11681000 16707 236 16184 311150;311151;311152;311153;311154;311155;311156;311157;311158;311159;311160;311161;311162;311163;311164;311165;311166;311167;311168;311169;311170;311171;311172;311173;311174;311175 190484;190485;190486 190484 2 QHHYETIVMGASFR Unmodified 1674.7937 0.7936594 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 3 2 2 2 2 3 1 1 1 1 1 2 23.395 22.627 2;3 1.2042E-06 10060 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.82 122.25 308800000 31157000 45959000 42760000 0 0 0 48722000 43607000 36436000 0 0 0 7538400 7207900 6844600 0 0 0 11719000 13084000 13766000 0 0 0 16708 401 16185 311176;311177;311178;311179;311180;311181;311182;311183;311184;311185;311186;311187;311188;311189;311190;311191;311192;311193;311194;311195;311196 190487;190488;190489;190490;190491;190492;190493 190488 5 QHIDILCAR Unmodified 1124.5761 0.57606205 1843 P76251 dmlA D-malate dehydrogenase [decarboxylating] yes yes 0 0 0 By MS/MS By matching 1 1 19.665 20.288 2 0.12841 7800 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 40.002 24.34 6868300 0 3365600 3502700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16709 1843 16186 311197;311198 190494 190494 1 QHITPILINPDTDLVQFLK Unmodified 2204.2205 0.22050447 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.849 51.472 3 2.876E-14 25285 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146.76 142.41 82273000 18630000 18589000 17983000 0 0 0 0 9890300 0 0 0 0 5794500 4162300 2443500 0 0 0 0 0 4780600 0 0 0 16710 326 16187 311199;311200;311201;311202;311203;311204;311205;311206 190495;190496;190497 190496 3 QHLNEEGVIQFLLK Unmodified 1666.9043 0.90425571 1766 P75736 ybfF Esterase YbfF yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 46.542 45.09 3 7.293E-06 21861 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.39 99.598 114730000 12770000 11997000 12135000 554540 0 0 9177600 8086600 8754200 0 0 0 6724500 5612000 7477800 0 0 0 12729000 9425000 9284400 0 0 0 16711 1766 16188 311207;311208;311209;311210;311211;311212;311213;311214;311215;311216;311217;311218;311219 190498;190499 190499 2 QHLNLLHILALYK Unmodified 1574.9297 0.9296826 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 3 3 3 3 3 3 3 3 3 3 2 3 3 3 3 3 2 3 42.6 40.983 2;3;4 5.4836E-25 20593 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 247.51 243.47 1384300000 27062000 16725000 25404000 0 1993100 1251200 130620000 126360000 113720000 69504000 68358000 74443000 52093000 53510000 50381000 60231000 46957000 97518000 106540000 98330000 106780000 24421000 14779000 17300000 16712 30 16189 311220;311221;311222;311223;311224;311225;311226;311227;311228;311229;311230;311231;311232;311233;311234;311235;311236;311237;311238;311239;311240;311241;311242;311243;311244;311245;311246;311247;311248;311249;311250;311251;311252;311253;311254;311255;311256;311257;311258;311259;311260;311261;311262;311263;311264;311265;311266;311267;311268;311269;311270;311271;311272;311273;311274;311275;311276;311277;311278;311279;311280;311281;311282;311283 190500;190501;190502;190503;190504;190505;190506;190507;190508;190509;190510;190511;190512;190513;190514;190515;190516;190517;190518;190519;190520;190521;190522;190523;190524;190525;190526;190527;190528;190529;190530;190531;190532;190533;190534;190535;190536;190537;190538;190539;190540;190541;190542;190543 190517 44 QHLYSISDEQLRPYFPENK Unmodified 2363.1546 0.15460975 1298 P27298 prlC Oligopeptidase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.157 32.709 3;4 1.0418E-14 15563 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 153.75 151.27 997990000 104530000 99764000 121010000 0 0 0 93380000 94929000 79812000 0 0 0 57684000 51708000 50006000 0 0 0 81316000 92291000 71568000 0 0 0 16713 1298 16190 311284;311285;311286;311287;311288;311289;311290;311291;311292;311293;311294;311295;311296;311297;311298;311299;311300;311301;311302;311303;311304;311305;311306;311307 190544;190545;190546;190547;190548;190549;190550;190551;190552;190553;190554;190555 190549 12 QHNIPVYYTAQPK Unmodified 1557.794 0.79397698 789 P0ADI4 entB Enterobactin synthase component B;Isochorismatase;Aryl carrier protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 19.044 19.638 2;3 1.1213E-05 7493 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143.24 140.92 377130000 17666000 23220000 27895000 0 0 0 12466000 19710000 5316700 0 0 0 23776000 24762000 25110000 0 0 0 64303000 73081000 59828000 0 0 0 16714 789 16191 311308;311309;311310;311311;311312;311313;311314;311315;311316;311317;311318;311319;311320;311321;311322;311323;311324;311325;311326;311327;311328;311329 190556;190557;190558;190559;190560;190561;190562;190563;190564;190565;190566;190567;190568;190569;190570;190571;190572;190573 190563 18 QHNLIIFADEIYDK Unmodified 1717.8675 0.86753585 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 1 41.443 39.71 2;3 3.3472E-08 19334 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 112.42 107.21 250800000 25819000 19052000 19103000 0 689410 0 20417000 18467000 15805000 0 1657400 0 18165000 17249000 13310000 0 0 0 24178000 28246000 25728000 1595100 1318700 0 16715 491 16192 311330;311331;311332;311333;311334;311335;311336;311337;311338;311339;311340;311341;311342;311343;311344;311345;311346;311347;311348;311349;311350;311351;311352;311353;311354;311355;311356;311357 190574;190575;190576;190577;190578;190579;190580;190581;190582;190583 190578 10 QHPIFER Unmodified 925.477 0.47699993 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 13.639 13.835 2 0.072193 3337 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 58.981 54.764 17731000 0 0 0 0 0 0 0 0 0 6265300 2863700 3101400 0 0 0 0 0 0 0 0 0 0 3421500 2079000 16716 190 16193 311358;311359;311360;311361;311362 190584;190585;190586 190586 3 QHQHLMQAWAIVR Unmodified 1616.8358 0.83579899 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 24.971 23.941 3 6.3187E-06 10697 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.018 88.581 92627000 3784800 0 0 0 0 0 9954300 11080000 9127400 0 0 0 6568000 5830000 6731600 0 0 0 15612000 9920300 14019000 0 0 0 16717 1073 16194 311363;311364;311365;311366;311367;311368;311369;311370;311371;311372 190587;190588 190587 2 QHQQDVR Unmodified 909.44168 0.44167706 1638 P61320 lolB Outer-membrane lipoprotein LolB yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 4.2121 5.0778 2 0.13162 913 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 48.115 41.661 6597400 0 0 0 0 0 628000 303950 0 0 0 0 0 0 0 0 0 0 0 0 4040200 1625200 0 0 0 16718 1638 16195 311373;311374;311375;311376 190589 190589 1 QHTHDAPR Unmodified 960.45258 0.4525761 1026 P0AGK8 iscR HTH-type transcriptional regulator IscR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 4.3195 5.2076 2 0.022069 858 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 65.676 58.005 39994000 0 0 0 0 0 0 0 0 0 0 0 0 2913000 3609400 3545200 0 0 0 11054000 10522000 8351000 0 0 0 16719 1026 16196 311377;311378;311379;311380;311381;311382 190590;190591 190591 2 QHVPVFVTDEMVGHK Unmodified 1721.8559 0.85592531 371 P0A7U3 rpsS 30S ribosomal protein S19 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 2 3 2 3 3 3 2 2 2 3 3 3 3 2 2 25.811 24.71 2;3;4 2.8004E-09 10996 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 151.74 148.98 6541300000 969790000 944900000 893880000 21686000 18282000 15686000 235580000 238720000 235640000 56914000 49348000 43727000 367850000 320990000 303750000 25986000 23655000 24901000 532040000 550290000 560650000 41031000 29936000 36027000 16720 371 16197 311383;311384;311385;311386;311387;311388;311389;311390;311391;311392;311393;311394;311395;311396;311397;311398;311399;311400;311401;311402;311403;311404;311405;311406;311407;311408;311409;311410;311411;311412;311413;311414;311415;311416;311417;311418;311419;311420;311421;311422;311423;311424;311425;311426;311427;311428;311429;311430;311431;311432;311433;311434;311435;311436;311437;311438;311439;311440;311441;311442;311443;311444 190592;190593;190594;190595;190596;190597;190598;190599;190600;190601;190602;190603;190604;190605;190606;190607;190608;190609;190610;190611;190612;190613;190614;190615;190616;190617;190618;190619;190620;190621;190622;190623;190624;190625;190626;190627;190628;190629;190630;190631;190632;190633;190634;190635;190636;190637;190638;190639;190640;190641;190642;190643;190644;190645;190646 190629 52 QHVPVFVTDEMVGHK Oxidation (M) 1737.8508 0.85083993 371 P0A7U3 rpsS 30S ribosomal protein S19 yes yes 0 1 0 By MS/MS By matching 1 1 19.632 20.265 3 0.0022339 7911 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 62.378 58.276 17776000 8851200 0 0 0 0 0 0 0 0 0 0 0 0 0 8925000 0 0 0 0 0 0 0 0 0 16721 371 16197 311445;311446 190647 190647 156 1 QIAADNLTQLTAFR Unmodified 1560.826 0.82600539 1142 P17802 mutY A/G-specific adenine glycosylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.335 41.82 2 3.7174E-11 20244 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 207.29 188.16 65360000 6353600 5441600 4868700 0 0 0 3835700 5440800 4503100 0 0 0 3912400 4217100 4166100 0 0 0 6292000 8332600 7996400 0 0 0 16722 1142 16198 311447;311448;311449;311450;311451;311452;311453;311454;311455;311456;311457;311458 190648;190649;190650;190651 190650 4 QIADDYQQALR Unmodified 1319.647 0.64697839 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.363 24.219 2 1.5033E-10 10953 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 230.7 222.17 8785500000 523890000 538850000 482550000 0 0 0 785720000 756140000 754700000 1809200 0 0 717410000 764210000 661000000 0 0 0 1036100000 903360000 859720000 0 0 0 16723 24 16199 311459;311460;311461;311462;311463;311464;311465;311466;311467;311468;311469;311470;311471 190652;190653;190654;190655;190656;190657;190658;190659;190660;190661;190662;190663 190654 12 QIAEIVFVPTGENLAIIEHTDVDESLK Unmodified 2979.5441 0.54408303 1517 P39274 yjdJ Uncharacterized protein YjdJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.127 51.687 3 5.1011E-11 24361 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 124.73 122.92 376940000 38582000 31437000 47608000 0 0 0 51974000 57248000 49670000 0 0 0 16941000 21175000 18993000 0 0 0 12669000 15005000 15635000 0 0 0 16724 1517 16200 311472;311473;311474;311475;311476;311477;311478;311479;311480;311481;311482;311483 190664 190664 1 QIAENPILLYMK Unmodified 1431.7796 0.77957246 705 P0AC69 grxD Glutaredoxin-4 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.139 46.678 2 2.2162E-05 22733 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 120.99 119.05 2646700000 311480000 312790000 306220000 3792000 3852900 3662400 127420000 130510000 119270000 0 3726200 5292700 214860000 204940000 174650000 0 0 0 222450000 242320000 241750000 6432000 5966400 5343200 16725 705 16201 311484;311485;311486;311487;311488;311489;311490;311491;311492;311493;311494;311495;311496;311497;311498;311499;311500;311501;311502;311503 190665;190666;190667;190668;190669;190670;190671;190672;190673;190674;190675;190676;190677;190678 190668 14 QIAINQGTEFIR Unmodified 1388.7412 0.74121312 275 P0A6S0 flgH Flagellar L-ring protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 33.035 31.606 2 4.9965E-05 15051 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.83 89.519 95134000 34245000 28870000 22131000 3505500 2720700 3661500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16726 275 16202 311504;311505;311506;311507;311508;311509 190679;190680;190681;190682;190683;190684 190682 6 QIALALRDEVADLEAAGIGIIQIDEPALR Unmodified 3072.6819 0.68191392 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 55.39 53.89 3;4 2.0058E-41 26793 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 211.92 204.78 271620000 17663000 15043000 10696000 0 0 0 70388000 68560000 68862000 0 0 0 2955700 0 0 0 0 0 6700900 6810000 3944100 0 0 0 16727 1265 16203 311510;311511;311512;311513;311514;311515;311516;311517;311518;311519;311520;311521;311522;311523;311524;311525 190685;190686 190686 2 QIALTEQGAQWLEENREQVEMIEER Unmodified 3028.456 0.45601308 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.834 47.597 3 3.4872E-22 19024 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 167.72 167.25 146500000 5469000 0 6120100 6252100 4551400 4602800 0 0 0 19156000 17507000 18003000 0 0 0 5868400 2874400 0 6530700 7448300 0 15686000 11832000 14598000 16728 1691 16204 311526;311527;311528;311529;311530;311531;311532;311533;311534;311535;311536;311537;311538;311539;311540 190687;190688;190689;190690 190687 4 QIAMGVDGANEVYNEIR Unmodified 1877.8942 0.89416131 1692 P64596 yraP Uncharacterized protein YraP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.532 38.745 2 1.3771E-10 15647 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 147.26 124.38 70288000 7033000 5815100 5196800 830190 1094900 884500 0 0 0 3383600 3111700 3538100 4974400 4671900 3244300 0 0 0 9510600 9340900 6136200 1522400 0 0 16729 1692 16205 311541;311542;311543;311544;311545;311546;311547;311548;311549;311550;311551;311552;311553;311554;311555;311556 190691 190691 1 QIAQSSEPHFVMEDWHNFGADYDTTLMAWYER Unmodified 3873.6828 0.68279491 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 53.577 52.114 4 1.0447E-10 25787 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 109.14 109.14 234860000 6675800 5415300 5814400 0 0 0 62097000 53076000 60264000 6510900 8515100 5856700 0 4499200 5706100 0 0 0 5620400 4810400 0 0 0 0 16730 522 16206 311557;311558;311559;311560;311561;311562;311563;311564;311565;311566;311567;311568;311569 190692;190693;190694 190693 3 QIASLGIYPAVDPLDSTSR Unmodified 2002.0371 0.037120373 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 50.465 49.141 2;3 2.3425E-67 24333 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 300.22 285.66 5859100000 138250000 128230000 128410000 36421000 37990000 35032000 371300000 398520000 408800000 186940000 178080000 152870000 498600000 463020000 446240000 12834000 8625300 9596800 614870000 631790000 596680000 130680000 118960000 126330000 16731 646 16207 311570;311571;311572;311573;311574;311575;311576;311577;311578;311579;311580;311581;311582;311583;311584;311585;311586;311587;311588;311589;311590;311591;311592;311593;311594;311595;311596;311597;311598;311599;311600;311601;311602;311603;311604;311605;311606;311607;311608;311609;311610;311611;311612;311613;311614 190695;190696;190697;190698;190699;190700;190701;190702;190703;190704;190705;190706;190707;190708;190709;190710;190711;190712;190713;190714;190715;190716;190717;190718;190719;190720;190721;190722;190723;190724;190725;190726;190727;190728;190729;190730;190731;190732;190733;190734;190735 190703 41 QIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTAR Unmodified 3823.9381 0.93808162 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 1 By MS/MS By matching 1 1 51.502 50.297 3 0.1718 24750 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 5.5163 4.1612 34006000 19290000 0 14716000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16732 646 16208 311615;311616 190736 190736 1 QIASVLNISEQTVK Unmodified 1528.8461 0.84607213 1380 P31802 narP Nitrate/nitrite response regulator protein NarP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.309 34.594 2 4.0276E-11 16011 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 171.92 145.14 346500000 41476000 0 30657000 2161500 1646000 2076700 35266000 35741000 28704000 8648600 8933600 8064300 25690000 25455000 23317000 3978100 0 0 18248000 18000000 21766000 2152000 2265600 2249800 16733 1380 16209 311617;311618;311619;311620;311621;311622;311623;311624;311625;311626;311627;311628;311629;311630;311631;311632;311633;311634;311635;311636;311637;311638 190737;190738;190739;190740;190741;190742;190743;190744;190745;190746;190747;190748;190749;190750;190751;190752 190750 14 QIDANQGGNQR Unmodified 1199.5643 0.56431139 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.377 11.219 2 2.5738E-07 2595 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 161.86 153.33 207190000 21740000 27585000 20351000 0 1135100 0 16591000 15279000 15967000 0 0 0 11527000 12192000 12456000 0 0 0 20550000 16851000 14970000 0 0 0 16734 1829 16210 311639;311640;311641;311642;311643;311644;311645;311646;311647;311648;311649;311650;311651 190753;190754;190755;190756 190754 4 QIDAVLK Unmodified 785.4647 0.46470391 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.803 19.253 2 0.0019661 7376 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.65 39.264 7384600000 535930000 540820000 454180000 0 2780900 3512600 930070000 891830000 964100000 0 933130 767880 476960000 488250000 417840000 0 0 0 572960000 585840000 517190000 653960 0 0 16735 399 16211 311652;311653;311654;311655;311656;311657;311658;311659;311660;311661;311662;311663;311664;311665;311666;311667;311668 190757;190758;190759;190760;190761;190762;190763;190764;190765;190766;190767 190759 11 QIDEYGNFVK Unmodified 1211.5823 0.58225287 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.511 26.363 2 9.4034E-05 11914 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.03 125.55 988940000 57246000 60611000 61937000 0 0 0 100380000 91165000 88309000 0 0 0 93485000 81549000 78758000 0 0 0 90889000 99290000 85315000 0 0 0 16736 1189 16212 311669;311670;311671;311672;311673;311674;311675;311676;311677;311678;311679;311680 190768;190769;190770;190771;190772;190773;190774;190775;190776;190777;190778;190779 190775 12 QIDQPLHLGITEAGGAR Unmodified 1774.9326 0.93259572 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 1 30.637 29.154 2;3 1.936E-39 13680 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 250.67 237.01 1001400000 85516000 97078000 88196000 2061000 1627100 2628500 77955000 80475000 77582000 1743200 0 1361600 80728000 78336000 71256000 0 0 0 77283000 80810000 89570000 2282300 2260900 2641000 16737 1649 16213 311681;311682;311683;311684;311685;311686;311687;311688;311689;311690;311691;311692;311693;311694;311695;311696;311697;311698;311699;311700;311701;311702;311703;311704;311705;311706;311707;311708;311709;311710;311711;311712 190780;190781;190782;190783;190784;190785;190786;190787;190788;190789;190790;190791;190792;190793;190794;190795;190796;190797;190798;190799;190800 190791 21 QIEAGAPADLFISADQK Unmodified 1772.8945 0.89447888 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 42.537 40.997 2 2.024E-10 20166 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 181.67 181.67 157990000 54657000 56494000 46836000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16738 1464 16214 311713;311714;311715 190801;190802;190803 190801 3 QIEALQQK Unmodified 956.5291 0.52909508 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.615 14.511 2 3.0288E-06 4596 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 181.49 135.54 2803200000 455300000 454070000 426890000 4682800 4462700 0 163320000 149330000 145810000 0 0 0 145060000 149350000 138450000 0 0 0 283400000 0 283050000 0 0 0 16739 1444 16215 311716;311717;311718;311719;311720;311721;311722;311723;311724;311725;311726;311727;311728 190804;190805;190806;190807;190808;190809;190810;190811;190812;190813 190809 8 QIEDAGLR Unmodified 900.46649 0.46649483 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.778 15.565 2 0.00084992 5160 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.52 77.521 1911400000 111470000 98264000 103640000 736530 769120 0 0 194620000 0 0 0 0 196460000 163600000 127950000 0 0 0 303240000 290490000 316100000 0 0 4019900 16740 337 16216 311729;311730;311731;311732;311733;311734;311735;311736;311737;311738;311739;311740;311741 190814;190815;190816;190817;190818 190817 4 QIEESGADLVVTDCETCK Unmodified 2052.898 0.89798563 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 30.081 28.169 2 4.2015E-22 13552 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 183 179.68 23945000 0 0 0 0 0 0 6744900 5482800 0 4759700 3949800 0 3007800 0 0 0 0 0 0 0 0 0 0 0 16741 500 16217 311742;311743;311744;311745;311746 190819 190819 1 QIEILYIEPIDGYR Unmodified 1720.9036 0.903587 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.97 50.722 2 1.9731E-26 23774 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 233.54 226.84 206420000 17814000 16423000 14361000 0 0 0 15765000 15531000 15178000 0 0 0 16881000 15533000 12014000 0 0 0 20186000 22504000 24234000 0 0 0 16742 1548 16218 311747;311748;311749;311750;311751;311752;311753;311754;311755;311756;311757;311758 190820;190821;190822 190821 3 QIEIYPIAGTRPR Unmodified 1512.8413 0.84126152 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 28.315 27.087 3 6.2017E-06 12249 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.82 114.19 104250000 36234000 31771000 29785000 2210600 2665800 1588300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16743 46 16219 311759;311760;311761;311762;311763;311764 190823;190824;190825;190826 190826 4 QIFQYLR Unmodified 966.5287 0.52870115 469 P0A8X0 yjgA UPF0307 protein YjgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 32.965 31.549 2 0.0024226 14895 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 112.56 89.035 130050000 27049000 17995000 25087000 0 0 0 6583500 10295000 0 0 0 0 5736400 5055300 7857900 0 0 0 8202200 9238600 6952100 0 0 0 16744 469 16220 311765;311766;311767;311768;311769;311770;311771;311772;311773;311774;311775 190827;190828;190829;190830;190831;190832;190833 190832 7 QIGIYSPNGQQYTPQDR Unmodified 1963.9388 0.93880331 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 4 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 31.162 29.782 2;3 3.006E-41 13487 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 271.01 255.47 9171900000 72516000 76334000 71003000 1443400000 1301400000 1242700000 113190000 112510000 106380000 102550000 87100000 91370000 56723000 50916000 49076000 32334000 16377000 20125000 116620000 115340000 105710000 1166200000 1278700000 1343300000 16745 939 16221 311776;311777;311778;311779;311780;311781;311782;311783;311784;311785;311786;311787;311788;311789;311790;311791;311792;311793;311794;311795;311796;311797;311798;311799;311800;311801;311802;311803;311804;311805;311806;311807;311808;311809;311810;311811;311812;311813;311814;311815;311816;311817;311818;311819;311820;311821;311822;311823;311824;311825;311826;311827;311828;311829;311830;311831 190834;190835;190836;190837;190838;190839;190840;190841;190842;190843;190844;190845;190846;190847;190848;190849;190850;190851;190852;190853;190854;190855;190856;190857;190858;190859;190860;190861;190862;190863;190864;190865;190866;190867;190868;190869;190870;190871;190872;190873;190874;190875;190876;190877;190878;190879;190880;190881;190882;190883;190884;190885;190886;190887 190846 53 QIGIYSPNGQQYTPQDREQVAYYK Unmodified 2845.3671 0.36712172 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 32.026 30.211 3 3.7496E-10 11354 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 122.18 121.49 251890000 0 0 0 47955000 45203000 61942000 0 0 0 2382000 0 0 0 0 0 0 0 0 0 0 0 31943000 27932000 34535000 16746 939 16222 311832;311833;311834;311835;311836;311837;311838 190888;190889;190890;190891;190892;190893 190888 6 QIGIYSPNGQQYTPQDREQVAYYKEDEK Unmodified 3346.5742 0.57421396 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 28.652 27.006 3;4 2.2928E-11 9015 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 128.92 126.72 392230000 0 0 0 55293000 81700000 79312000 0 0 0 5229500 4645700 0 0 0 0 0 0 0 0 0 0 63762000 53783000 48509000 16747 939 16223 311839;311840;311841;311842;311843;311844;311845;311846;311847;311848;311849;311850;311851;311852 190894;190895;190896;190897;190898;190899;190900;190901;190902;190903;190904 190903 11 QIGMIFQDHHLLMDR Unmodified 1852.9076 0.9076433 551 P0A9R7 ftsE Cell division ATP-binding protein FtsE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 24.635 23.689 3 0.15904 10744 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 10.634 0 579270000 72624000 57538000 51984000 0 0 0 47556000 43041000 42945000 0 0 0 41815000 43227000 39585000 0 0 0 44628000 47996000 46332000 0 0 0 16748 551 16224 311853;311854;311855;311856;311857;311858;311859;311860;311861;311862;311863;311864;311865;311866;311867;311868;311869;311870;311871;311872;311873;311874;311875;311876 190905;190906;190907;190908;190909;190910;190911;190912;190913;190914 190907 10 QIGPTLK Unmodified 755.45414 0.45413923 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 16.032 16.855 2 0.017719 5842 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.451 50.113 619620000 54955000 51545000 53054000 0 0 0 52240000 59303000 54555000 0 0 0 45549000 36329000 35312000 0 0 0 58052000 64458000 54271000 0 0 0 16749 90 16225 311877;311878;311879;311880;311881;311882;311883;311884;311885;311886;311887;311888;311889 190915;190916;190917;190918;190919;190920;190921;190922;190923;190924;190925;190926 190923 12 QIGTEDFAR Unmodified 1035.4985 0.49852324 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 20.601 20.43 2 0.0064572 6706 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 70.856 60.442 36690000 0 0 0 0 0 0 10669000 0 10508000 3239900 3177200 3409900 0 0 0 0 0 0 0 0 0 2390100 1547000 1748700 16750 1932 16226 311890;311891;311892;311893;311894;311895;311896;311897;311898;311899 190927;190928;190929;190930;190931;190932 190927 6 QIHQLMENCTR Unmodified 1428.6602 0.66020239 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 2 1 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 2 1 13.488 14.097 2;3 1.4741E-07 4027 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 169.77 166.52 519810000 53048000 31658000 54550000 0 0 1150000 41861000 30552000 31056000 1183500 1802600 1185100 33765000 32092000 28735000 32692000 25715000 21795000 11958000 22308000 61926000 776130 0 0 16751 37 16227 311900;311901;311902;311903;311904;311905;311906;311907;311908;311909;311910;311911;311912;311913;311914;311915;311916;311917;311918;311919;311920;311921;311922;311923;311924;311925;311926;311927;311928;311929;311930;311931 190933;190934;190935;190936;190937;190938;190939;190940;190941;190942;190943;190944 190942 11 QIIANTVDFGASDAPLSDEK Unmodified 2090.0168 0.016778861 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 2 2 2 2 2 2 2 2 40.817 39.112 2;3 1.2434E-95 19029 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 347.6 339.69 1958000000 11307000 7996200 7035600 0 0 0 221080000 210900000 206010000 0 0 0 217900000 198410000 196360000 0 0 0 239210000 232630000 202710000 0 0 6488600 16752 994 16228 311932;311933;311934;311935;311936;311937;311938;311939;311940;311941;311942;311943;311944;311945;311946;311947;311948;311949;311950;311951;311952;311953;311954;311955 190945;190946;190947;190948;190949;190950;190951;190952;190953;190954;190955;190956;190957;190958;190959;190960;190961;190962;190963;190964 190953 20 QIIDEDLASGK Unmodified 1187.6034 0.60338224 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.86 23.872 2 0.00017061 10157 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 108.26 96.055 1619400000 104850000 107990000 99624000 0 0 0 163840000 163410000 145670000 0 0 0 119880000 114220000 93418000 0 0 0 180420000 163140000 162910000 0 0 0 16753 63 16229 311956;311957;311958;311959;311960;311961;311962;311963;311964;311965;311966;311967 190965;190966;190967;190968;190969;190970;190971;190972;190973;190974;190975;190976 190974 12 QIIIATGEGAK Unmodified 1099.6237 0.62372375 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.3 20.617 2 8.2425E-05 7704 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 123.21 109.07 2287300000 106660000 106610000 87417000 955880 774820 961420 285810000 309880000 305310000 0 0 0 193570000 150030000 141930000 0 0 0 223180000 185500000 185950000 1182200 633410 978620 16754 1437 16230 311968;311969;311970;311971;311972;311973;311974;311975;311976;311977;311978;311979;311980;311981;311982;311983;311984;311985 190977;190978;190979;190980;190981;190982;190983;190984;190985;190986;190987;190988 190987 12 QIINAIDNMTDIEQEK Unmodified 1873.9091 0.90914267 1291 P27238 yfeD Uncharacterized protein YfeD yes yes 0 0 0 By MS/MS 1 40.341 40.495 2 1.2578E-07 14120 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 121.28 110.37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16755 1291 16231 311986 190989 190989 1 QIINIGELK Unmodified 1026.6073 0.6073454 1627 P60664 hisF Imidazole glycerol phosphate synthase subunit HisF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.259 32.811 2 0.0043927 15060 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 78.192 56.917 174600000 19793000 21545000 17859000 0 0 0 12675000 11925000 11925000 0 0 0 11578000 10260000 12794000 0 0 0 14146000 11706000 18396000 0 0 0 16756 1627 16232 311987;311988;311989;311990;311991;311992;311993;311994;311995;311996;311997;311998 190990;190991;190992;190993;190994;190995;190996;190997;190998;190999 190997 10 QIISYVPR Unmodified 974.55492 0.5549159 835 P0AE60 cedA Cell division activator CedA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.943 25.046 2 0.0019937 7880 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 104.21 88.055 504700000 0 8081900 9533200 0 0 0 5151500 4603900 0 0 0 0 3636600 3933900 7258000 164160000 135310000 142080000 6627800 7835500 5302700 0 0 1192300 16757 835 16233 311999;312000;312001;312002;312003;312004;312005;312006;312007;312008;312009;312010;312011;312012 191000;191001;191002 191002 3 QILDVLDVIAPVEVR Unmodified 1677.9665 0.96652161 763 P0AD10 yecJ Uncharacterized protein YecJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.355 53.899 2 9.92E-36 26425 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 262 202.09 405810000 25476000 25759000 27715000 2674300 2233500 2470000 25979000 26632000 27483000 4715600 2628200 3477200 30915000 31273000 30039000 0 0 0 40331000 39869000 44349000 4246600 7546600 0 16758 763 16234 312013;312014;312015;312016;312017;312018;312019;312020;312021;312022;312023;312024;312025;312026;312027;312028;312029;312030;312031;312032 191003;191004;191005;191006;191007;191008;191009;191010 191007 8 QILEGVEYK Unmodified 1077.5706 0.57062555 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.185 24.172 2 0.0017177 10743 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.696 77.431 315720000 33425000 33316000 28188000 0 0 0 24073000 22437000 20393000 0 0 0 25486000 24199000 21130000 0 0 0 25576000 28699000 28793000 0 0 0 16759 1845 16235 312033;312034;312035;312036;312037;312038;312039;312040;312041;312042;312043;312044 191011;191012;191013;191014;191015;191016;191017;191018;191019;191020;191021 191017 11 QILLDTYYGR Unmodified 1240.6452 0.64518747 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.092 34.547 2 6.1206E-08 13850 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 206.09 203.41 4103300000 388970000 362050000 376170000 73821000 69276000 74849000 402560000 386030000 431610000 71901000 65769000 67591000 196400000 159190000 173180000 5289400 4689900 4134000 175710000 191170000 188820000 76587000 78799000 78719000 16760 548 16236 312045;312046;312047;312048;312049;312050;312051;312052;312053;312054;312055;312056;312057;312058;312059;312060;312061;312062;312063;312064;312065;312066;312067;312068 191022;191023;191024;191025;191026;191027;191028;191029;191030;191031;191032;191033;191034;191035;191036;191037;191038;191039;191040;191041 191022 18 QILLDTYYGRDYVEGETAAK Unmodified 2304.1274 0.12739194 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 37.074 35.354 3 8.8198E-05 12432 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 72.359 64.27 38924000 0 0 0 11390000 16012000 11522000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16761 548 16237 312069;312070;312071 191042;191043;191044 191043 3 QILLDTYYGRDYVEGETAAKK Unmodified 2432.2224 0.22235496 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 32.097 30.43 3 0.00010571 11463 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 77.08 73.417 39907000 0 0 0 7441800 7903600 7972500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5088300 4574900 6925700 16762 548 16238 312072;312073;312074;312075;312076;312077 191045;191046;191047;191048;191049;191050 191045 6 QILPDWLTIEEHPHLLK Unmodified 2081.131 0.13096118 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 1 1 1 2 2 2 2 2 2 46.065 44.494 3;4 5.6456E-07 21804 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.94 104.94 1378400000 116290000 122720000 161300000 0 0 0 80775000 99398000 119240000 3336300 2952500 2978400 105380000 102560000 103110000 0 0 0 117970000 125890000 114450000 0 0 0 16763 948 16239 312078;312079;312080;312081;312082;312083;312084;312085;312086;312087;312088;312089;312090;312091;312092;312093;312094;312095;312096;312097;312098;312099;312100;312101 191051;191052;191053;191054;191055;191056;191057;191058;191059;191060;191061;191062;191063;191064;191065;191066;191067;191068 191060 18 QILPEANSQIVGFR Unmodified 1570.8467 0.84674083 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 40.005 38.144 2;3 3.9259E-11 18418 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 162.31 157.84 1822400000 143600000 132510000 115580000 2020400 1960100 1146400 164650000 153350000 153790000 22720000 23637000 20840000 139210000 128570000 120590000 0 0 0 170370000 154510000 165600000 2802200 2363500 2587800 16764 1716 16240 312102;312103;312104;312105;312106;312107;312108;312109;312110;312111;312112;312113;312114;312115;312116;312117;312118;312119;312120;312121;312122;312123;312124;312125;312126;312127;312128;312129;312130;312131;312132;312133;312134;312135;312136;312137 191069;191070;191071;191072;191073;191074;191075;191076;191077;191078;191079;191080;191081;191082;191083;191084;191085;191086 191079 16 QILQDVK Unmodified 842.48617 0.48616764 776 P0ADA1 tesA Acyl-CoA thioesterase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 2 2 2 2 2 2 1 1 16.414 17.199 2 0.021102 5995 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 76.035 30.019 172280000 19263000 22165000 17944000 0 0 0 12448000 12857000 13673000 0 0 0 15164000 11831000 11702000 0 0 0 14964000 10384000 9879400 0 0 0 16765 776 16241 312138;312139;312140;312141;312142;312143;312144;312145;312146;312147;312148;312149;312150;312151;312152;312153;312154;312155;312156 191087;191088;191089 191089 3 QILTAEAVEFLTELVTHFTPQR Unmodified 2542.3431 0.3431388 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 3 3 1 1 1 2 1 2 55.919 54.422 3;4 8.6007E-35 26980 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 203.48 196.12 1131100000 289950000 276520000 253770000 0 0 0 51645000 38965000 39564000 0 0 0 26000000 25662000 19909000 0 0 0 35283000 35451000 38390000 0 0 0 16766 195 16242 312157;312158;312159;312160;312161;312162;312163;312164;312165;312166;312167;312168;312169;312170;312171;312172;312173;312174;312175;312176;312177;312178;312179;312180 191090;191091;191092;191093;191094;191095;191096;191097;191098;191099;191100;191101;191102;191103 191098 14 QILTNIIQSEDR Unmodified 1428.7573 0.75725712 1042 P0C0S1 mscS Small-conductance mechanosensitive channel yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.397 33.844 2 2.6031E-08 13157 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 198.62 195.37 737350000 45558000 31129000 33822000 11423000 15657000 12495000 60621000 56934000 55003000 33231000 35624000 34942000 41488000 38872000 43883000 7244200 5624100 5838700 43085000 45166000 42501000 14204000 11589000 11412000 16767 1042 16243 312181;312182;312183;312184;312185;312186;312187;312188;312189;312190;312191;312192;312193;312194;312195;312196;312197;312198;312199;312200;312201;312202;312203;312204 191104;191105;191106;191107;191108;191109;191110;191111;191112;191113;191114;191115;191116;191117;191118;191119;191120;191121;191122;191123;191124;191125 191109 22 QILWNLISNAVK Unmodified 1397.8031 0.8030851 846 P0AEC3 arcB Aerobic respiration control sensor protein ArcB yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.114 51.681 2 0.012694 21210 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 60.434 50.48 38033000 2687000 3635300 0 1523200 0 0 2138300 0 2499300 2703700 0 1783900 3245500 2855900 2100200 0 0 0 3176100 4646300 4235300 0 802890 0 16768 846 16244 312205;312206;312207;312208;312209;312210;312211;312212;312213;312214;312215;312216;312217;312218 191126;191127 191126 1 QILYLLGPVGGGK Unmodified 1313.7707 0.77072234 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.432 44.967 2 2.2482E-05 22446 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 108.15 105.29 326200000 64696000 65057000 58568000 0 0 0 33110000 32986000 29920000 0 0 0 6533200 6483800 5728900 0 0 0 7617800 8123400 7374000 0 0 0 16769 757 16245 312219;312220;312221;312222;312223;312224;312225;312226;312227;312228;312229;312230 191128;191129;191130;191131 191128 4 QIMVYTHDSIGLGEDGPTHQAVEQLASLR Unmodified 3164.5561 0.55606148 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 1 2 1 1 2 1 1 43.371 41.823 3;4 1.9555E-31 20503 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 192.25 190.08 451220000 97362000 76179000 80658000 0 0 0 40934000 45573000 55190000 0 0 0 7257300 0 6478900 0 0 0 20577000 9385900 11630000 0 0 0 16770 1423 16246 312231;312232;312233;312234;312235;312236;312237;312238;312239;312240;312241;312242;312243;312244;312245;312246;312247 191132;191133;191134;191135;191136;191137;191138;191139;191140;191141 191137 10 QINLPTEVSEAIYNR Unmodified 1745.8948 0.89481323 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 45.334 43.744 2;3 1.7724E-16 21289 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 158.52 153.63 509610000 17774000 14963000 16414000 8351400 8328200 4113200 44732000 44940000 41664000 18628000 22372000 14710000 22634000 26042000 25510000 2869200 0 0 48504000 51196000 37776000 13682000 11460000 12945000 16771 648 16247 312248;312249;312250;312251;312252;312253;312254;312255;312256;312257;312258;312259;312260;312261;312262;312263;312264;312265;312266;312267;312268;312269;312270;312271;312272;312273;312274;312275;312276;312277;312278;312279;312280;312281;312282;312283;312284;312285;312286;312287;312288;312289;312290 191142;191143;191144;191145;191146;191147;191148;191149;191150;191151;191152;191153;191154;191155;191156;191157;191158;191159;191160;191161;191162;191163;191164;191165;191166;191167;191168;191169;191170;191171;191172;191173;191174;191175;191176;191177;191178;191179 191162 37 QINVFLR Unmodified 888.51814 0.51813647 708 P0AC84 gloB Hydroxyacylglutathione hydrolase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.633 30.273 2 0.0073714 14497 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.584 80.768 213260000 36364000 33474000 28935000 858480 0 0 25568000 27804000 25839000 0 0 0 5890200 6187200 7031200 0 0 0 12087000 3219100 0 0 0 0 16772 708 16248 312291;312292;312293;312294;312295;312296;312297;312298;312299;312300;312301;312302 191180;191181;191182 191180 1 QIPGKEEFYETLR Unmodified 1608.8148 0.814772 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 1 By MS/MS By matching 1 1 27.952 26.923 2 0.0011749 12375 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.655 61.683 9378400 5005600 4372900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16773 1554 16249 312303;312304 191183 191183 1 QIPIAVR Unmodified 795.49667 0.49667274 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.061 21.872 2 0.15079 8849 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 44.611 33.635 45818000 9219500 7114600 5558600 0 1227100 0 2563100 3282500 3115900 994570 1078700 926320 1653300 1900600 0 0 0 0 0 3578200 3605500 0 0 0 16774 1937 16250 312305;312306;312307;312308;312309;312310;312311;312312;312313;312314;312315;312316;312317;312318 191184 191184 1 QIPVDICNHALLVGYGR Unmodified 1923.9989 0.99890115 1544 P39830 ybaL Inner membrane protein YbaL yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 40.083 38.127 3 0.018766 18933 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 46.319 41.109 76728000 0 0 0 0 0 0 6919000 7915500 8536700 2136000 3032600 2261200 6253100 4453100 4137900 0 0 0 11696000 8547700 8613000 0 0 2225900 16775 1544 16251 312319;312320;312321;312322;312323;312324;312325;312326;312327;312328;312329;312330;312331 191185 191185 0 QIQVEGLR Unmodified 941.52943 0.52942943 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 21.047 21.035 2 0.00017407 6477 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 154.35 118.47 1444900000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 550660000 441370000 452860000 0 0 0 0 0 0 16776 1089 16252 312332;312333;312334 191186;191187;191188 191186 3 QIQVEGLRR Unmodified 1097.6305 0.63054046 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 2 2 2 1 1 15.946 16.015 2;3 6.5089E-06 4249 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 208.22 113.34 1658300000 0 0 0 0 0 493010 0 0 0 22745000 23425000 20423000 0 0 0 555180000 498670000 533360000 0 0 0 1752800 2268500 0 16777 1089 16253 312335;312336;312337;312338;312339;312340;312341;312342;312343;312344;312345;312346;312347;312348;312349 191189;191190;191191;191192;191193;191194;191195;191196 191189 8 QIRPLSDEEK Unmodified 1213.6303 0.63026569 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 12.286 13.18 2 0.035793 3509 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 60.717 22.167 98580000 0 22397000 18032000 0 0 0 0 0 0 0 0 0 21947000 22019000 14186000 0 0 0 0 0 0 0 0 0 16778 563 16254 312350;312351;312352;312353;312354 191197 191197 1 QISEELHLDEILNA Unmodified 1622.8152 0.81516593 1643 P61949 fldA Flavodoxin-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.121 48.714 2 1.0523E-11 23692 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 219.5 216 357700000 29599000 29403000 29769000 0 0 0 35037000 27382000 27769000 0 0 0 28719000 22223000 28244000 0 0 0 37385000 32113000 30061000 0 0 0 16779 1643 16255 312355;312356;312357;312358;312359;312360;312361;312362;312363;312364;312365;312366 191198;191199;191200;191201;191202;191203;191204;191205;191206;191207;191208;191209 191206 11 QISENTK Unmodified 818.4134 0.41339662 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.423 8.1588 2 0.0059588 1341 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 97.473 82.033 167860000 28342000 31862000 29570000 450090 370630 325450 0 0 0 8551600 8990600 6856500 7172900 6044200 5841000 0 0 0 11901000 9415900 7216300 0 4947400 0 16780 1492 16256 312367;312368;312369;312370;312371;312372;312373;312374;312375;312376;312377;312378;312379;312380;312381;312382 191210;191211;191212;191213;191214 191212 5 QISLHFVPTAILSR Unmodified 1580.9039 0.90386178 901 P0AF03 mog Molybdopterin adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.59 42.075 2;3 2.079E-06 20908 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.69 97.439 647330000 65496000 63124000 51744000 0 0 0 65629000 47222000 51976000 0 0 0 39987000 36460000 40475000 0 0 0 65791000 58423000 60998000 0 0 0 16781 901 16257 312383;312384;312385;312386;312387;312388;312389;312390;312391;312392;312393;312394;312395;312396;312397;312398;312399;312400;312401;312402;312403;312404;312405;312406 191215;191216;191217;191218;191219;191220;191221;191222;191223;191224;191225;191226;191227;191228 191216 13 QISNLQQSISDAEQR Unmodified 1715.8438 0.84384029 11 CON__P04264 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 2 2 2 2 2 2 1 2 28.486 27.185 2;3 7.406E-28 10103 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 293.31 291.87 461250000 8753100 5696300 0 4306300 2254800 2155600 17040000 16051000 18697000 103440000 85159000 97205000 0 0 0 7013400 3380800 4354300 0 0 0 32100000 21151000 32497000 + 16782 11 16258 312407;312408;312409;312410;312411;312412;312413;312414;312415;312416;312417;312418;312419;312420;312421;312422;312423;312424;312425;312426;312427;312428;312429;312430;312431;312432;312433;312434;312435 191229;191230;191231;191232;191233;191234;191235;191236;191237;191238;191239 191234 11 QISNLQQSISDAEQRGENALK Unmodified 2328.167 0.16696535 11 CON__P04264 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 38.147 36.448 3 1.6106E-15 14418 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 149.12 144.68 91022000 0 0 0 1263900 1480100 1226000 0 0 0 23658000 17984000 21247000 0 0 0 0 1110000 2378800 0 0 0 6885000 7449200 6339900 + 16783 11 16259 312436;312437;312438;312439;312440;312441;312442;312443;312444;312445;312446 191240;191241;191242;191243;191244;191245 191241 6 QISNLQQSISDAEQRGENALKDAK Unmodified 2642.326 0.32598518 11 CON__P04264 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1 1 1 2 1 2 38.755 36.989 3;4 3.4498E-07 14701 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 108.4 102.24 170530000 0 0 0 0 3721200 3330100 0 0 0 39325000 39152000 36902000 0 0 0 4220800 2326000 4371000 0 0 0 13357000 10656000 13169000 + 16784 11 16260 312447;312448;312449;312450;312451;312452;312453;312454;312455;312456;312457;312458;312459;312460;312461 191246;191247;191248;191249;191250;191251;191252;191253;191254;191255;191256 191249 10 QISQEAAK Unmodified 873.4556 0.45559579 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 10.236 11.059 2 0.00073223 2445 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.5 73.102 723990000 254930000 246420000 214430000 0 0 0 0 0 0 0 0 0 920590 920670 0 0 0 0 0 3268000 3101100 0 0 0 16785 1919 16261 312462;312463;312464;312465;312466;312467;312468 191257;191258;191259 191259 3 QITDDLMNQPAVTVTNFVR Unmodified 2161.0838 0.083752989 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 50.81 49.606 2 0.0001326 24248 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.5 96.423 27417000 6088200 5335900 5277200 0 0 0 0 0 0 0 0 0 2688300 3238400 0 0 0 0 0 4788700 0 0 0 0 16786 1006 16262 312469;312470;312471;312472;312473;312474 191260;191261 191261 0 QITFAPR Unmodified 831.46029 0.46028724 1368 P31455 yidR Uncharacterized protein YidR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 20.491 21.045 2 0.072193 8315 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 58.981 41.214 69092000 0 0 0 0 0 0 0 0 0 0 0 0 10339000 9480500 9218100 0 0 0 13392000 12019000 14644000 0 0 0 16787 1368 16263 312475;312476;312477;312478;312479;312480 191262;191263;191264 191264 3 QIVLNCGEEPSVVANTVK Unmodified 1955.9986 0.99862638 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 2 2 2 3 3 3 3 3 3 3 3 3 2 2 2 3 3 3 2 2 2 34.874 33.348 2;3 5.2079E-45 16000 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 256.95 254.42 12125000000 1281600000 1102100000 996280000 29273000 32203000 29600000 986310000 899330000 894670000 33927000 32283000 26917000 806040000 765250000 760510000 13789000 7327300 12150000 1097600000 1136100000 1097000000 30212000 25736000 29090000 16788 240 16264 312481;312482;312483;312484;312485;312486;312487;312488;312489;312490;312491;312492;312493;312494;312495;312496;312497;312498;312499;312500;312501;312502;312503;312504;312505;312506;312507;312508;312509;312510;312511;312512;312513;312514;312515;312516;312517;312518;312519;312520;312521;312522;312523;312524;312525;312526;312527;312528;312529;312530;312531;312532;312533;312534;312535;312536;312537;312538;312539;312540;312541;312542;312543;312544;312545;312546 191265;191266;191267;191268;191269;191270;191271;191272;191273;191274;191275;191276;191277;191278;191279;191280;191281;191282;191283;191284;191285;191286;191287;191288;191289;191290;191291;191292;191293;191294;191295;191296;191297;191298;191299;191300;191301;191302;191303;191304;191305 191296 36 QIVTLTYPHIGNVGTNDADEESSQVHAQGLVIR Unmodified 3560.7859 0.78593807 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 2 2 40.37 38.819 3;4 5.2462E-25 18989 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 158.97 154.48 1086700000 288330000 267310000 226570000 1837600 1481000 1749500 0 0 0 0 0 0 21330000 15955000 16197000 0 0 0 88073000 89242000 68597000 0 0 0 16789 238 16265 312547;312548;312549;312550;312551;312552;312553;312554;312555;312556;312557;312558;312559;312560;312561;312562;312563;312564 191306;191307;191308;191309;191310;191311;191312;191313;191314 191310 9 QIYEDQLSSLHNDSK Unmodified 1775.8326 0.83260691 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.561 22.015 2;3 9.1636E-46 9332 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 285.32 283.68 1312500000 86421000 81323000 85068000 0 0 0 87517000 92623000 85675000 0 0 0 88666000 93311000 80353000 0 0 0 174030000 169890000 187610000 0 0 0 16790 1218 16266 312565;312566;312567;312568;312569;312570;312571;312572;312573;312574;312575;312576;312577;312578;312579;312580;312581;312582;312583;312584;312585;312586;312587;312588 191315;191316;191317;191318;191319;191320;191321;191322;191323;191324;191325;191326;191327;191328;191329;191330;191331;191332;191333;191334;191335;191336 191324 22 QIYEHGVPQAPLAVTGETEK Unmodified 2166.0957 0.095697884 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 28.57 27.242 2;3 1.9615E-23 12412 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 242.93 222.46 2112000000 165960000 148750000 129060000 2782700 0 0 141400000 169540000 164090000 21028000 11955000 14160000 171400000 151360000 153540000 5942200 4237000 5659700 212530000 221130000 204990000 5696800 6814700 0 16791 883 16267 312589;312590;312591;312592;312593;312594;312595;312596;312597;312598;312599;312600;312601;312602;312603;312604;312605;312606;312607;312608;312609;312610;312611;312612;312613;312614;312615;312616;312617;312618;312619;312620;312621;312622;312623;312624 191337;191338;191339;191340;191341;191342;191343;191344;191345;191346;191347;191348;191349;191350;191351;191352;191353;191354;191355 191348 19 QIYQVPTK Unmodified 975.53893 0.53893149 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 17.816 18.515 2 0.0029529 6735 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.19 65.687 174250000 61634000 61283000 51337000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16792 71 16268 312625;312626;312627 191356;191357;191358 191358 3 QKDEVAER Unmodified 973.48287 0.48287317 1556 P42616 yqjC Protein YqjC yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 4.9178 5.763 2 0.12726 1152 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 54.776 22.471 262430000 0 0 0 0 0 0 37754000 39654000 60098000 0 0 0 0 0 0 0 0 0 47760000 40136000 37024000 0 0 0 16793 1556 16269 312628;312629;312630;312631;312632;312633 191359 191359 1 QKEIADGLASAER Unmodified 1386.7103 0.71030693 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 15.695 16.225 2;3 3.9984E-17 4535 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 208.56 191.53 1052100000 16025000 8547100 8993300 14271000 14722000 3923300 67035000 58101000 56838000 59429000 54080000 55711000 65556000 59602000 58205000 18598000 16409000 14155000 85118000 100570000 94807000 44332000 37562000 39484000 16794 642 16270 312634;312635;312636;312637;312638;312639;312640;312641;312642;312643;312644;312645;312646;312647;312648;312649;312650;312651;312652;312653;312654;312655;312656;312657;312658;312659;312660;312661;312662;312663;312664;312665;312666;312667;312668;312669;312670;312671;312672;312673;312674;312675;312676;312677;312678 191360;191361;191362;191363;191364;191365;191366;191367;191368;191369;191370;191371;191372;191373;191374;191375;191376;191377;191378;191379;191380;191381 191369 22 QKEQFSDGVGYSWIDTLK Unmodified 2100.0164 0.016384931 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 42.497 40.597 2;3 7.5435E-17 20219 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 194.59 187.69 347500000 38159000 37670000 37517000 0 0 0 77310000 73040000 81172000 0 2634000 0 0 0 0 0 0 0 0 0 0 0 0 0 16795 1191 16271 312679;312680;312681;312682;312683;312684;312685;312686;312687;312688;312689;312690;312691 191382;191383;191384;191385;191386 191383 5 QKGAVPYAYTANLGQPDEEDYDAIPR Unmodified 2880.3566 0.35661661 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 37.707 35.988 3 9.4522E-05 12636 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 66.853 64.379 7594300 0 0 0 2392700 2257600 2944000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16796 235 16272 312692;312693;312694 191387 191387 1 QKGETFADGHGQLLNTNR Unmodified 1984.9715 0.97150042 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 1 2 2 2 2 1 2 1 16.271 16.959 3;4 1.0165E-06 5541 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 88.551 84.947 354870000 15225000 13126000 13246000 0 0 615810 32641000 38362000 37876000 0 0 5950700 21613000 12848000 19635000 0 0 0 49542000 39607000 41941000 2486800 5224900 4924500 16797 205 16273 312695;312696;312697;312698;312699;312700;312701;312702;312703;312704;312705;312706;312707;312708;312709;312710;312711;312712;312713;312714;312715;312716;312717;312718;312719;312720;312721;312722;312723;312724 191388;191389;191390;191391;191392;191393;191394;191395;191396;191397;191398;191399;191400;191401;191402 191400 13 QKGETFADGHGQLLNTNRDWEDGYR Unmodified 2906.3332 0.33319583 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 26.97 25.432 5 0.0013216 9612 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 60.464 60.456 58803000 0 0 0 1581100 2488700 1764100 0 0 0 11907000 8976200 5956200 0 0 0 0 0 0 0 0 0 8139700 8670100 9320400 16798 205 16274 312725;312726;312727;312728;312729;312730;312731;312732;312733 191403;191404;191405;191406;191407 191403 5 QKHPTIPIGLLMYANLVFNK Unmodified 2296.2766 0.27657956 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 52.985 51.579 4 0.035867 25385 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 38.915 30.525 21626000 6846600 8381100 6398500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16799 404 16275 312734;312735;312736 191408 191408 1 QKIYDLVEAITGFR Unmodified 1651.8934 0.89335667 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 52.693 51.721 3 1.1908E-06 20743 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 124.07 118.79 57063000 0 0 0 0 0 2497400 0 0 0 4263500 9821900 8249200 0 0 0 4615800 6498800 4734800 0 0 0 5928600 4589500 5863100 16800 1426 16276 312737;312738;312739;312740;312741;312742;312743;312744;312745;312746 191409;191410;191411;191412;191413;191414 191413 6 QKLESQISTLYGGR Unmodified 1578.8366 0.83657007 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 2 2 2 2 2 2 2 2 1 2 1 1 2 2 2 2 2 2 25.041 23.971 2;3 7.8935E-11 10624 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 192.3 175.27 385360000 6643000 5873000 6520100 0 10082000 0 23306000 32167000 28833000 38278000 33762000 28946000 12958000 6039900 3878300 5034700 5466300 4648600 29319000 17979000 24641000 20704000 18142000 22137000 16801 595 16277 312747;312748;312749;312750;312751;312752;312753;312754;312755;312756;312757;312758;312759;312760;312761;312762;312763;312764;312765;312766;312767;312768;312769;312770;312771;312772;312773;312774;312775;312776;312777;312778;312779;312780;312781;312782;312783;312784 191415;191416;191417;191418;191419;191420;191421;191422;191423;191424;191425;191426 191424 8 QKLHGYLPSR Unmodified 1197.6618 0.66184059 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.873 13.254 2;3 7.8461E-05 2727 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 138.06 126.55 11597000000 0 0 0 2218100000 1890900000 2118500000 0 0 0 151200000 139090000 123820000 0 0 0 50215000 48196000 48564000 0 0 0 1632500000 1479400000 1696900000 16802 939 16278 312785;312786;312787;312788;312789;312790;312791;312792;312793;312794;312795;312796;312797;312798;312799;312800;312801;312802;312803;312804;312805;312806;312807;312808 191427;191428;191429;191430;191431;191432;191433;191434;191435;191436;191437;191438;191439;191440;191441;191442 191442 16 QKLHGYLPSRQPNFTEK Unmodified 2042.0698 0.069757905 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 15.859 16.541 3;4;5 1.4074E-06 4575 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 73.498 63.585 633840000 0 0 0 129400000 136640000 110010000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 86474000 86847000 84466000 16803 939 16279 312809;312810;312811;312812;312813;312814;312815;312816;312817;312818;312819;312820;312821;312822;312823 191443;191444;191445;191446;191447;191448;191449;191450;191451;191452;191453;191454 191448 12 QKLTDLIK Unmodified 957.58588 0.58588168 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.394 21.948 2 0.15115 7571 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 51.854 14.209 42973000 0 0 0 6312500 5861200 6916600 0 0 0 2628000 4626300 3347000 0 0 0 2139100 859760 587280 0 0 0 3292800 2886900 3515300 16804 956 16280 312824;312825;312826;312827;312828;312829;312830;312831;312832;312833;312834;312835 191455 191455 1 QKQLLQELQESFGGPTGEHNSPR Unmodified 2579.2728 0.2728274 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 35.714 33.564 4 0.10703 13094 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 27.928 23.577 19327000 0 0 0 0 3395300 0 0 0 0 3092700 0 3127400 0 0 0 0 0 0 0 0 0 3460400 2700200 3551300 16805 190 16281 312836;312837;312838;312839;312840;312841 191456;191457 191457 2 QKQPTPGIQAK Unmodified 1194.6721 0.67207093 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 11.075 11.75 3 0.1027 2929 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 31.425 28.476 48587000 20608000 27979000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16806 995 16282 312842;312843;312844 191458;191459 191458 2 QKQYAPMSVAQQSLVLFAAER Unmodified 2364.226 0.22600055 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 47.497 45.769 3 3.1035E-10 18041 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 116.6 108.89 164420000 0 0 0 9852700 9876500 10471000 0 0 0 18319000 20645000 19935000 0 0 0 0 0 0 0 0 0 26181000 26369000 22771000 16807 645 16283 312845;312846;312847;312848;312849;312850;312851;312852;312853 191460;191461;191462;191463;191464 191464 5 QKVDLSTFSDEEVMR Oxidation (M) 1798.8407 0.84072875 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 9 7 8 10 8 10 8 7 8 29.956 28.669 2;3 3.4026E-20 11121 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 213.84 206.8 1379000000 0 0 0 887880 981470 621350 0 0 0 134390000 93240000 87093000 0 0 0 268660000 212610000 210710000 0 0 0 151330000 83414000 135020000 16808 463 16284 312854;312855;312856;312857;312858;312859;312860;312861;312862;312863;312864;312865;312866;312867;312868;312869;312870;312871;312872;312873;312874;312875;312876;312877;312878;312879;312880;312881;312882;312883;312884;312885;312886;312887;312888;312889;312890;312891;312892;312893;312894;312895;312896;312897;312898;312899;312900;312901;312902;312903;312904;312905;312906;312907;312908;312909;312910;312911;312912;312913;312914;312915;312916;312917;312918;312919;312920;312921;312922;312923;312924;312925;312926;312927;312928;312929;312930;312931 191465;191466;191467;191468;191469;191470;191471;191472;191473;191474;191475;191476;191477;191478;191479;191480;191481;191482;191483;191484;191485;191486;191487;191488;191489;191490;191491;191492;191493;191494;191495;191496;191497;191498;191499;191500;191501;191502;191503;191504;191505;191506;191507;191508;191509;191510;191511;191512;191513;191514;191515;191516;191517;191518;191519;191520;191521;191522;191523;191524;191525;191526;191527;191528;191529;191530;191531;191532;191533 191475 276 68 QKVDLSTFSDEEVMR Unmodified 1782.8458 0.84581413 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 6 8 7 3 2 2 10 8 8 2 2 2 9 6 5 35.602 34.206 2;3 1.9384E-45 12054 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 283.35 276.91 33089000000 50025000 46120000 41104000 12487000 13274000 12714000 28601000 27983000 27631000 1729200000 1736800000 1495800000 44156000 35020000 36197000 7032000000 6370800000 6704100000 59908000 51907000 56852000 2689100000 2365700000 2421700000 16809 463 16284 312932;312933;312934;312935;312936;312937;312938;312939;312940;312941;312942;312943;312944;312945;312946;312947;312948;312949;312950;312951;312952;312953;312954;312955;312956;312957;312958;312959;312960;312961;312962;312963;312964;312965;312966;312967;312968;312969;312970;312971;312972;312973;312974;312975;312976;312977;312978;312979;312980;312981;312982;312983;312984;312985;312986;312987;312988;312989;312990;312991;312992;312993;312994;312995;312996;312997;312998;312999;313000;313001;313002;313003;313004;313005;313006;313007;313008;313009;313010;313011;313012;313013;313014;313015;313016;313017;313018;313019;313020;313021;313022;313023;313024;313025;313026;313027;313028;313029 191534;191535;191536;191537;191538;191539;191540;191541;191542;191543;191544;191545;191546;191547;191548;191549;191550;191551;191552;191553;191554;191555;191556;191557;191558;191559;191560;191561;191562;191563;191564;191565;191566;191567;191568;191569;191570;191571;191572;191573;191574;191575;191576;191577;191578;191579;191580;191581;191582;191583;191584;191585;191586;191587;191588;191589;191590;191591;191592;191593;191594;191595 191571 57 QKVPAKPVNCMGLTFK Unmodified 1816.9692 0.96918092 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 21.837 21.64 4 0.15922 6429 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 16.173 12.072 17459000 0 0 0 2707000 3628300 3372400 0 0 0 1683200 0 909690 0 0 0 0 0 0 0 0 0 1669300 1915700 1573700 16810 335 16285 313030;313031;313032;313033;313034;313035;313036;313037 191596 191596 1 QKVTDVEGK Unmodified 1002.5346 0.53457439 264 P0A6M8 fusA Elongation factor G yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.359 11.175 2 0.00097389 2547 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.01 75.072 376970000 35512000 31677000 25487000 0 0 0 35489000 31915000 30148000 0 0 0 26297000 22165000 26434000 0 0 0 39192000 35435000 37224000 0 0 0 16811 264 16286 313038;313039;313040;313041;313042;313043;313044;313045;313046;313047;313048;313049 191597;191598 191597 2 QLAAVAHSLEMGVLTEVSNEEEQER Unmodified 2768.3287 0.3286873 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 49.872 48.533 3 3.6539E-50 23870 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 227.37 224.49 88893000 33408000 29975000 25510000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16812 49 16287 313050;313051;313052 191599;191600;191601 191599 3 QLAAVPSSADPSR Unmodified 1297.6626 0.66262845 1418 P33235 flgK Flagellar hook-associated protein 1 yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 19.559 20.093 2 0.0008878 7709 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.808 60.05 11274000 6335000 0 4175200 763580 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16813 1418 16288 313053;313054;313055 191602 191602 1 QLADGTAKPEVQDETLVTYAEK Unmodified 2405.1962 0.19619979 1224 P23882 fmt Methionyl-tRNA formyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 30.876 29.497 3 1.0547E-10 13732 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.52 123.57 567420000 53460000 0 49908000 0 0 0 47369000 37790000 48470000 0 0 0 55100000 45575000 46869000 0 0 0 60028000 61643000 61207000 0 0 0 16814 1224 16289 313056;313057;313058;313059;313060;313061;313062;313063;313064;313065;313066 191603;191604;191605;191606;191607;191608;191609;191610;191611;191612;191613 191608 11 QLAEDNFGETEEVAPPTLRPVPPVSGK Unmodified 2876.4556 0.45560237 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.249 37.572 3 1.0394E-23 18509 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 179.2 177.15 997280000 43227000 31226000 28395000 1491100 1964900 1501200 99089000 97558000 91072000 11152000 9516800 8116600 85419000 83856000 80841000 3002500 1613000 0 101940000 108580000 99667000 4592200 0 3459800 16815 1468 16290 313067;313068;313069;313070;313071;313072;313073;313074;313075;313076;313077;313078;313079;313080;313081;313082;313083;313084;313085;313086;313087;313088 191614;191615;191616;191617;191618;191619;191620;191621;191622;191623;191624;191625;191626;191627;191628;191629 191620 16 QLAEDPFNNWVALNK Unmodified 1757.8737 0.87368386 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 2 2 2 2 2 2 1 2 2 2 2 1 1 1 1 2 2 2 2 2 2 49.19 47.888 2;3 2.8561E-11 22278 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 189.57 185.81 3803200000 460320000 425420000 410610000 8053200 7159100 7383100 225780000 218660000 211060000 16388000 18918000 17756000 277370000 203110000 218520000 22199000 15633000 16349000 330490000 344220000 307610000 15047000 13013000 12109000 16816 990 16291 313089;313090;313091;313092;313093;313094;313095;313096;313097;313098;313099;313100;313101;313102;313103;313104;313105;313106;313107;313108;313109;313110;313111;313112;313113;313114;313115;313116;313117;313118;313119;313120;313121;313122;313123;313124;313125;313126;313127;313128;313129 191630;191631;191632;191633;191634;191635;191636;191637;191638;191639;191640;191641;191642;191643;191644;191645;191646;191647;191648;191649;191650;191651;191652;191653;191654;191655;191656;191657 191657 28 QLAEDPFNNWVALNKK Unmodified 1885.9686 0.96864688 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 1 1 3 3 3 2 2 2 3 3 3 3 2 1 3 3 3 2 2 2 40.528 38.901 2;3 1.602E-31 13353 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 191.57 190.9 1722900000 157860000 144410000 115410000 29809000 26019000 28075000 67565000 69567000 65800000 63911000 59884000 64662000 66631000 70790000 62072000 65904000 48339000 47110000 111710000 104800000 101850000 47316000 54676000 48709000 16817 990 16292 313130;313131;313132;313133;313134;313135;313136;313137;313138;313139;313140;313141;313142;313143;313144;313145;313146;313147;313148;313149;313150;313151;313152;313153;313154;313155;313156;313157;313158;313159;313160;313161;313162;313163;313164;313165;313166;313167;313168;313169;313170;313171;313172;313173;313174;313175;313176;313177;313178;313179;313180;313181;313182;313183;313184;313185;313186 191658;191659;191660;191661;191662;191663;191664;191665;191666;191667;191668;191669;191670;191671;191672;191673;191674;191675;191676;191677;191678;191679 191659 22 QLAEISALGLPVIVKPSR Unmodified 1890.1302 0.1302329 171 P07862 ddlB D-alanine--D-alanine ligase B yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.804 45.414 3 9.3845E-05 22066 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 70.837 70.837 290700000 25130000 33763000 26572000 0 0 0 22273000 22093000 18379000 0 0 0 19307000 19895000 19590000 0 0 0 27596000 28835000 27264000 0 0 0 16818 171 16293 313187;313188;313189;313190;313191;313192;313193;313194;313195;313196;313197;313198 191680;191681 191680 2 QLAEQVLTHLDLNGIASK Unmodified 1949.0582 0.058190166 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.272 43.857 3 4.8921E-05 21207 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.332 77.598 433460000 31768000 29733000 32558000 0 0 0 35537000 40309000 26301000 0 0 0 36840000 28975000 29521000 0 0 0 45227000 54802000 41887000 0 0 0 16819 1073 16294 313199;313200;313201;313202;313203;313204;313205;313206;313207;313208;313209;313210 191682;191683;191684;191685;191686;191687;191688;191689;191690 191686 9 QLAFNMLPLLPDSEGSVR Unmodified 1986.0244 0.024447197 187 P08390 usg USG-1 protein yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.758 53.301 2 0.018269 26179 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 57.136 49.766 103180000 11245000 9055100 14448000 0 0 0 12448000 10947000 8435000 0 0 0 0 8856900 7536600 0 0 0 6685100 6319700 7206500 0 0 0 16820 187 16295 313211;313212;313213;313214;313215;313216;313217;313218;313219;313220;313221 191691;191692;191693 191692 0 QLAFNMLPLLPDSEGSVREER Unmodified 2400.2107 0.21074442 187 P08390 usg USG-1 protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 51.048 49.731 3 0.00012484 19785 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 70.837 60.154 17945000 0 0 0 2105000 1423900 1859500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4858000 3476200 4222800 16821 187 16296 313222;313223;313224;313225;313226;313227 191694 191694 1 QLAGVNQVQVLFATEK Unmodified 1743.9519 0.95193418 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 45.369 43.925 2 0.0083266 20545 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 56.951 51.106 30347000 3491300 0 0 0 0 0 4892700 4618700 0 0 0 0 2967400 3950300 2882500 0 0 0 3829800 3714300 0 0 0 0 16822 1475 16297 313228;313229;313230;313231;313232;313233;313234;313235 191695 191695 1 QLAHGDFGPSFK Unmodified 1302.6357 0.63568542 941 P0AFH2 oppB Oligopeptide transport system permease protein OppB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 21.654 21.698 2;3 1.0405E-16 8598 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 205.32 199.84 489880000 81949000 82733000 77052000 22089000 22661000 29280000 3087200 3801300 3127400 6609800 8810600 6131300 20037000 15423000 16079000 0 0 0 25450000 29331000 23453000 0 5816800 6955000 16823 941 16298 313236;313237;313238;313239;313240;313241;313242;313243;313244;313245;313246;313247;313248;313249;313250;313251;313252;313253;313254;313255;313256;313257;313258;313259;313260;313261;313262;313263;313264;313265;313266;313267;313268;313269;313270;313271;313272 191696;191697;191698;191699;191700;191701;191702;191703;191704;191705;191706;191707;191708;191709 191705 12 QLALECASK Unmodified 1018.5117 0.51173046 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 16.798 17.563 2 0.000567 6456 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.93 97.015 374690000 3881600 0 0 0 0 0 56364000 55713000 54563000 0 0 0 28363000 26024000 25075000 0 0 0 39466000 44251000 40995000 0 0 0 16824 1323 16299 313273;313274;313275;313276;313277;313278;313279;313280;313281;313282 191710;191711;191712;191713;191714;191715;191716 191710 6 QLALIEDETQAAVFSK Unmodified 1761.9149 0.91487997 762 P0AD07 yecF Uncharacterized protein YecF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 44.355 42.781 2 2.3809E-13 20706 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 160.38 146.87 288090000 0 0 0 0 0 0 33089000 26681000 27741000 0 0 0 25303000 23755000 22195000 0 0 0 47220000 43705000 38399000 0 0 0 16825 762 16300 313283;313284;313285;313286;313287;313288;313289;313290;313291 191717;191718;191719;191720;191721;191722;191723 191720 6 QLANQADVLVR Unmodified 1225.6779 0.67788459 1547 P39838 rcsD Phosphotransferase RcsD yes yes 0 0 0 By MS/MS 1 25.051 24.198 2 0.020727 10673 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 60.398 45.724 2627000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2627000 0 0 0 16826 1547 16301 313292 191724 191724 0 QLAQQLNMEFYDSDQEIEKR Unmodified 2484.1591 0.15910278 233 P0A6D7 aroK Shikimate kinase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.764 36.004 3 1.4532E-37 16804 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 231.21 228.11 507050000 56929000 49647000 35141000 1370000 1589200 1584300 35434000 28274000 39864000 5613000 0 0 38418000 37799000 43178000 0 0 0 46025000 48316000 37869000 0 0 0 16827 233 16302 313293;313294;313295;313296;313297;313298;313299;313300;313301;313302;313303;313304;313305;313306;313307;313308 191725;191726;191727;191728;191729;191730;191731;191732;191733;191734;191735 191733 11 QLASMAFTPCGSQDMAK Unmodified 1841.811 0.8110253 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.217 32.672 2 3.2494E-31 14942 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 238.07 238.07 253810000 23658000 19645000 18305000 545290 0 0 11665000 14086000 12304000 0 0 0 24755000 19496000 21331000 0 0 0 23564000 26283000 24557000 4554900 5141700 3916200 16828 1445 16303 313309;313310;313311;313312;313313;313314;313315;313316;313317;313318;313319;313320;313321;313322;313323;313324 191736;191737;191738;191739;191740;191741;191742;191743;191744;191745;191746;191747;191748;191749;191750 191749 15 QLASVTVEDSR Unmodified 1203.6095 0.60953025 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 18.669 19.198 2 1.9518E-07 7292 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.34 140.23 4394300000 318620000 316250000 286550000 2848800 2725000 3284000 316030000 328960000 393780000 0 1253900 1094500 381320000 363310000 371050000 0 0 0 453930000 431210000 420360000 0 1691600 0 16829 385 16304 313325;313326;313327;313328;313329;313330;313331;313332;313333;313334;313335;313336;313337;313338;313339;313340;313341;313342;313343;313344;313345;313346 191751;191752;191753;191754;191755;191756;191757;191758;191759;191760;191761;191762;191763;191764;191765 191752 15 QLAYPINK Unmodified 945.52837 0.5283668 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.223 20.429 2 0.014857 7624 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.141 56.205 2738500000 359130000 375800000 338770000 7081900 6946800 6223400 145820000 139110000 136290000 19945000 19228000 15114000 155490000 149810000 130780000 9320700 6034700 6413100 229860000 219060000 230390000 11839000 9031300 10972000 16830 66 16305 313347;313348;313349;313350;313351;313352;313353;313354;313355;313356;313357;313358;313359;313360;313361;313362;313363;313364;313365;313366;313367;313368;313369;313370 191766;191767;191768;191769;191770;191771;191772;191773;191774;191775;191776;191777;191778;191779;191780;191781 191781 13 QLCFMQHIIETLHPGGR Unmodified 2036.0084 0.0084199769 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 2 2 1 2 2 2 2 43.97 42.442 3;4 0.0051862 19792 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 50.077 46.109 151040000 6781300 5701300 8187900 0 0 0 15829000 10831000 9034400 0 0 0 15640000 6022900 15447000 0 0 0 17074000 20087000 20401000 0 0 0 16831 194 16306 313371;313372;313373;313374;313375;313376;313377;313378;313379;313380;313381;313382;313383;313384;313385;313386;313387;313388;313389 191782;191783;191784;191785;191786;191787 191786 6 QLDAQFFHMGMGFR Unmodified 1683.765 0.76500181 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 44.947 43.457 3 0.092314 21112 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 30.572 26.669 68555000 6130700 6790900 5100300 0 0 0 7024800 7652800 7358700 0 0 0 3379500 0 4240700 0 0 0 6696100 8556100 5624900 0 0 0 16832 1548 16307 313390;313391;313392;313393;313394;313395;313396;313397;313398;313399;313400 191788 191788 1 QLDETSQQETR Unmodified 1333.611 0.61098681 893 P0AEX3 kgtP Alpha-ketoglutarate permease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 11.266 12.146 2 2.4698E-10 3162 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 190.24 183.64 83006000 16288000 12222000 14725000 4680200 2859700 0 0 0 0 0 0 0 0 5554400 0 0 0 0 8215500 9891200 8569800 0 0 0 16833 893 16308 313401;313402;313403;313404;313405;313406;313407;313408;313409;313410 191789;191790;191791;191792;191793;191794 191792 6 QLDHGQK Unmodified 824.41407 0.41406533 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.299 6.9095 2 0.0012711 1507 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 132.96 107.4 969370000 54902000 45294000 38352000 4948900 3568500 4387300 11847000 9715000 11145000 27009000 26470000 27110000 99014000 91924000 80293000 9670600 3802600 3001500 127480000 115470000 107450000 26134000 23046000 17331000 16834 645 16309 313411;313412;313413;313414;313415;313416;313417;313418;313419;313420;313421;313422;313423;313424;313425;313426;313427;313428;313429;313430;313431;313432;313433;313434 191795;191796;191797;191798;191799;191800;191801;191802;191803;191804;191805;191806;191807;191808;191809;191810 191803 16 QLDLWGK Unmodified 858.45995 0.45995289 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 32.898 31.214 2 0.0046873 14995 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 102.77 65.798 76270000 0 0 0 0 0 0 0 9919300 10439000 2391900 3421300 2753300 6539500 5184600 7088200 0 0 0 8534400 7737500 9954900 1172000 0 1134700 16835 1447 16310 313435;313436;313437;313438;313439;313440;313441;313442;313443;313444;313445;313446;313447 191811;191812;191813;191814;191815;191816;191817;191818 191812 8 QLDLYHMQEEAPGMVFWHNDGWTIFR Unmodified 3219.4695 0.46949507 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.292 52.844 4 1.3802E-15 25900 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143.48 143.15 673380000 63426000 51415000 47721000 0 0 0 64163000 66521000 42700000 0 0 0 49986000 50410000 40774000 0 0 0 74492000 67468000 54305000 0 0 0 16836 445 16311 313448;313449;313450;313451;313452;313453;313454;313455;313456;313457;313458;313459 191819;191820;191821;191822;191823;191824;191825;191826;191827 191821 9 QLDPLVVGQEHYDTAR Unmodified 1839.9115 0.91152593 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 29.848 28.449 2;3 6.3285E-40 13226 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 297.88 288.88 8846200000 208930000 206890000 217400000 49798000 44700000 48362000 715900000 700570000 716640000 215180000 189850000 183750000 638460000 658790000 656720000 59119000 55501000 49268000 887380000 952590000 906170000 168330000 161510000 154340000 16837 646 16312 313460;313461;313462;313463;313464;313465;313466;313467;313468;313469;313470;313471;313472;313473;313474;313475;313476;313477;313478;313479;313480;313481;313482;313483;313484;313485;313486;313487;313488;313489;313490;313491;313492;313493;313494;313495;313496;313497;313498;313499;313500;313501;313502;313503;313504;313505;313506 191828;191829;191830;191831;191832;191833;191834;191835;191836;191837;191838;191839;191840;191841;191842;191843;191844;191845;191846;191847;191848;191849;191850;191851;191852;191853;191854;191855;191856;191857;191858;191859;191860;191861;191862;191863;191864;191865;191866;191867;191868;191869;191870;191871 191852 44 QLDQTTQR Unmodified 988.49377 0.49377221 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 10.793 11.111 2 0.15249 2125 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 48.561 39.739 38815000 0 0 0 0 0 0 0 0 0 0 4746200 5324600 0 4955800 0 0 4474800 1874400 11727000 0 0 0 2632000 3080800 16838 73 16313 313507;313508;313509;313510;313511;313512;313513;313514 191872 191872 0 QLDSGKLDEAMAR Unmodified 1432.698 0.69802768 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 2 2 1 19.968 20.185 2;3 0.0068778 6425 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 57.136 51.652 163660000 9681700 6185400 7425600 19384000 18640000 17471000 6015600 3983100 4248300 9652900 10076000 8076600 3215900 5053500 0 0 0 0 4707400 4747800 5346500 7033900 6487200 6231100 16839 956 16314 313515;313516;313517;313518;313519;313520;313521;313522;313523;313524;313525;313526;313527;313528;313529;313530;313531;313532;313533;313534;313535;313536;313537;313538;313539;313540;313541;313542;313543 191873;191874;191875;191876;191877;191878;191879;191880 191873 8 QLDSIVGER Unmodified 1015.5298 0.52982336 14;8 CON__P48668;CON__P02538;CON__P04259;CON__P13647 no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 21.919 21.598 2 0.0032424 7231 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 82.279 71.21 39793000 0 0 0 1302500 1686400 1367800 0 0 0 9151700 7131800 4070300 0 0 0 0 0 985980 0 0 0 3421400 5070100 5605400 + 16840 8;14 16315 313544;313545;313546;313547;313548;313549;313550;313551;313552;313553 191881;191882;191883;191884;191885;191886 191882 6 QLDVFLDPNDPK Unmodified 1399.6983 0.69834526 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.025 38.204 2 4.782E-06 18882 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 133.91 131.16 537160000 8261100 11435000 11775000 3718000 0 0 35957000 32822000 32374000 0 13788000 12439000 34854000 33321000 27300000 0 0 0 51168000 49152000 51401000 45636000 46702000 35055000 16841 1067 16316 313554;313555;313556;313557;313558;313559;313560;313561;313562;313563;313564;313565;313566;313567;313568;313569;313570;313571 191887;191888;191889;191890;191891;191892;191893;191894;191895;191896;191897;191898;191899 191888 13 QLEAATQLEGK Unmodified 1186.6194 0.61936665 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.303 19.72 2 7.2814E-06 7510 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 180.09 134.39 1152200000 116300000 108770000 95995000 2880700 3025400 3337600 139310000 135440000 125220000 5670900 5343300 5120300 62469000 62199000 59851000 0 0 0 72197000 71914000 76165000 0 983160 0 16842 1662 16317 313572;313573;313574;313575;313576;313577;313578;313579;313580;313581;313582;313583;313584;313585;313586;313587;313588;313589;313590 191900;191901;191902;191903;191904;191905;191906;191907;191908 191902 8 QLEAESIHIIR Unmodified 1307.7197 0.7197494 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 25.849 24.708 2;3 1.2251E-07 10577 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 171.56 163.92 2071100000 140830000 129060000 131270000 3361500 3120100 2979200 147050000 146680000 149760000 3170000 3264800 2273900 147490000 137620000 128300000 2479900 0 0 267930000 273620000 237790000 4105300 4628600 4346300 16843 1169 16318 313591;313592;313593;313594;313595;313596;313597;313598;313599;313600;313601;313602;313603;313604;313605;313606;313607;313608;313609;313610;313611;313612;313613;313614;313615;313616;313617;313618;313619;313620;313621;313622;313623;313624 191909;191910;191911;191912;191913;191914;191915;191916;191917;191918;191919;191920;191921;191922;191923;191924;191925;191926;191927;191928;191929;191930;191931;191932 191928 20 QLEAQLHDANER Unmodified 1422.6852 0.68515481 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 12.987 13.852 2 1.9869E-08 4180 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.93 165.29 34172000 3286900 0 3876000 0 0 0 0 0 3966900 0 0 0 4499800 3063600 0 0 0 0 5044200 6027500 4407200 0 0 0 16844 1664 16319 313625;313626;313627;313628;313629;313630;313631;313632 191933;191934 191934 2 QLEFGLFDFR Unmodified 1270.6346 0.63462279 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.6 53.152 2 6.606E-09 26057 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 189.7 178.87 258870000 28265000 30004000 24226000 0 0 0 26483000 22147000 22964000 0 0 0 15398000 13027000 11499000 0 0 0 25893000 19863000 19104000 0 0 0 16845 1298 16320 313633;313634;313635;313636;313637;313638;313639;313640;313641;313642;313643;313644 191935;191936;191937;191938;191939;191940 191940 6 QLEGQSDLGFAGFR Unmodified 1523.7369 0.73685603 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 39.889 38.08 2 1.5957E-37 18494 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 255.7 248.06 112070000 0 0 0 0 0 0 16873000 14633000 14492000 0 0 0 22915000 21127000 22034000 0 0 0 0 0 0 0 0 0 16846 1548 16321 313645;313646;313647;313648;313649;313650;313651;313652;313653 191941;191942;191943;191944;191945;191946;191947 191943 7 QLEKDDVK Unmodified 973.50803 0.50802529 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 9.8121 10.333 1;2 1.5539E-07 1999 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 158.61 110.05 13650000000 93061000 91764000 64301000 2082800 3151200 2427100 6365100 3081300 3668700 652250000 579660000 521180000 81219000 72430000 41718000 3868500000 1928000000 2457200000 97288000 100720000 92396000 967960000 1059900000 859270000 16847 463 16322 313654;313655;313656;313657;313658;313659;313660;313661;313662;313663;313664;313665;313666;313667;313668;313669;313670;313671;313672;313673;313674;313675;313676;313677;313678;313679;313680;313681;313682;313683;313684;313685;313686;313687;313688;313689;313690;313691;313692 191948;191949;191950;191951;191952;191953;191954;191955;191956;191957;191958;191959;191960;191961;191962;191963;191964;191965;191966;191967;191968;191969;191970;191971;191972;191973;191974;191975 191953 27 QLEKDDVKLIEVPVEYIAGK Unmodified 2285.2519 0.25186418 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 3 2 2 2 2 3 43.118 41.69 2;3;4 3.481E-15 15483 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 154.46 151.57 2080600000 0 0 0 911450 1010000 0 0 0 0 64418000 60694000 54107000 0 0 0 417780000 468860000 412400000 0 0 0 196900000 209330000 194160000 16848 463 16323 313693;313694;313695;313696;313697;313698;313699;313700;313701;313702;313703;313704;313705;313706;313707;313708;313709;313710;313711;313712;313713;313714 191976;191977;191978;191979;191980;191981;191982;191983;191984;191985;191986;191987;191988 191976 13 QLENMFGQPLLVR Unmodified 1543.8181 0.81808324 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 45.572 45.694 2 1.6785E-17 17334 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 213.31 190.67 30679000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14151000 8801000 7727100 0 0 0 0 0 0 16849 456 16324 313715;313716;313717 191989;191990;191991 191989 3 QLENPYIR Unmodified 1031.54 0.53999412 1811 P76049 ycjY Uncharacterized protein YcjY yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 22.508 22.209 2 0.11958 9346 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 45.081 22.95 13217000 0 5818300 3289600 0 0 0 0 0 0 0 0 0 0 1987400 2121200 0 0 0 0 0 0 0 0 0 16850 1811 16325 313718;313719;313720;313721 191992 191992 1 QLEQEQMK Unmodified 1032.491 0.49099502 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.003 12.588 2 0.0031836 2883 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.262 56.616 506550000 68652000 55117000 43467000 6119600 7351600 5288800 0 0 0 17484000 17932000 17894000 23764000 25859000 33229000 14477000 12038000 12073000 34478000 28369000 32983000 17008000 15620000 17343000 16851 352 16326 313722;313723;313724;313725;313726;313727;313728;313729;313730;313731;313732;313733;313734;313735;313736;313737;313738;313739;313740;313741;313742 191993;191994;191995;191996;191997;191998;191999 191993 1 QLEQEQMKQDVPSFRPGDTVEVK Unmodified 2687.3225 0.32247971 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 1 1 1 28.645 27.268 3;4 0.00222 9186 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 58.457 52.336 170750000 0 0 0 14873000 12556000 17093000 0 0 0 24642000 13922000 16448000 0 0 0 25054000 11202000 11030000 0 0 0 23931000 0 0 16852 352 16327 313743;313744;313745;313746;313747;313748;313749;313750;313751;313752;313753;313754;313755;313756;313757;313758 192000;192001;192002;192003;192004;192005;192006;192007;192008;192009;192010 192000 11 QLEVCEDICQQIR Unmodified 1689.7814 0.78143973 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.133 32.718 2 2.1964E-19 15523 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 225.67 205.91 98098000 17396000 14517000 15304000 0 0 697910 0 8002000 6743900 0 0 0 4914600 5509300 5025100 0 0 0 6733300 7375000 5880400 0 0 0 16853 44 16328 313759;313760;313761;313762;313763;313764;313765;313766;313767;313768;313769;313770 192011;192012;192013;192014;192015 192013 5 QLFVNTLQEK Unmodified 1218.6608 0.66083754 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.203 28.847 2 6.2184E-07 13797 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 173.75 161.51 3385500000 361400000 350480000 312180000 0 0 0 321800000 305900000 286510000 0 0 0 207620000 187840000 167940000 0 0 0 296880000 306410000 280570000 0 0 0 16854 31 16329 313771;313772;313773;313774;313775;313776;313777;313778;313779;313780;313781;313782 192016;192017;192018;192019;192020;192021;192022;192023;192024;192025;192026;192027 192017 12 QLGADGSEWCR Unmodified 1277.5459 0.54588413 110 P05458 ptrA Protease 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.02 22.067 2 7.7734E-05 9263 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 142.92 139.35 86159000 9755400 7861000 5845400 0 0 0 6777300 6524500 6265900 0 0 0 5062800 5282600 6441000 0 0 0 9912900 8652700 7777300 0 0 0 16855 110 16330 313783;313784;313785;313786;313787;313788;313789;313790;313791;313792;313793;313794 192028;192029;192030;192031;192032;192033;192034 192028 4 QLGEDPWVAIAK Unmodified 1325.698 0.69795133 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 1 2 1 1 1 40.938 39.317 2;3 2.7043E-06 19401 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 140.16 116.13 7195900000 793280000 818320000 746380000 32236000 35203000 34039000 454400000 425830000 416930000 64859000 67792000 66530000 395330000 381850000 397420000 80511000 59332000 46019000 600840000 609990000 532600000 43375000 46901000 45880000 16856 990 16331 313795;313796;313797;313798;313799;313800;313801;313802;313803;313804;313805;313806;313807;313808;313809;313810;313811;313812;313813;313814;313815;313816;313817;313818;313819;313820;313821;313822;313823;313824;313825 192035;192036;192037;192038;192039;192040;192041;192042;192043;192044;192045;192046;192047;192048;192049;192050;192051;192052;192053;192054;192055;192056;192057;192058;192059 192043 25 QLGFSGSDEQVLEK Unmodified 1535.7468 0.74675201 1834 P76216 astB N-succinylarginine dihydrolase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 30.916 29.777 2 3.444E-06 13848 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.74 111.01 54130000 17957000 18732000 17441000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16857 1834 16332 313826;313827;313828 192060;192061 192061 2 QLGHEVTGSDANVYPPMSTLLEK Unmodified 2485.2159 0.21588937 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 39.705 38.066 3 2.0984E-06 17771 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 90.06 86.845 137220000 1751400 0 8767700 0 0 0 16106000 14497000 0 0 0 0 16417000 13571000 10918000 0 0 0 19728000 19522000 15946000 0 0 0 16858 1500 16333 313829;313830;313831;313832;313833;313834;313835;313836;313837;313838;313839 192062;192063;192064;192065;192066;192067;192068;192069 192068 6 QLGIAPMTSMFSCGTNER Unmodified 1998.8962 0.89615192 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 46.286 44.8 2 5.1202E-10 21854 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.06 129.62 33860000 2691400 0 3963100 0 0 0 3033800 0 4323500 0 0 0 0 3648500 2725800 0 0 0 3335700 5765700 4372500 0 0 0 16859 1548 16334 313840;313841;313842;313843;313844;313845;313846;313847;313848 192070;192071 192071 2 QLGIPFAR Unmodified 900.51814 0.51813647 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.798 33.386 2 0.0013452 15971 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 109.63 103.24 1123800000 70106000 68098000 62977000 0 0 0 105680000 103000000 94501000 0 0 1428400 76903000 82607000 68251000 1075100 0 0 125110000 136090000 127990000 0 0 0 16860 1360 16335 313849;313850;313851;313852;313853;313854;313855;313856;313857;313858;313859;313860;313861;313862 192072;192073;192074;192075;192076;192077;192078;192079;192080;192081;192082 192075 11 QLGLQPYEPISQAMHEFTDTR Unmodified 2460.1744 0.17435891 1629 P60720 lipB Octanoyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 50.323 48.973 3 4.9703E-06 22910 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 88.755 85.914 109160000 0 0 0 0 0 0 0 0 0 0 0 0 18004000 0 18536000 0 0 0 25190000 24646000 22783000 0 0 0 16861 1629 16336 313863;313864;313865;313866;313867 192083;192084;192085 192085 3 QLGYNVFK Unmodified 967.51272 0.51271674 1907 P77454 glsA1 Glutaminase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.022 27.766 2 0.0052891 13291 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.866 77.921 388670000 47156000 46069000 46317000 0 0 0 75504000 64032000 69646000 0 0 0 7691900 8158500 7916400 0 0 0 5178300 5615900 5381300 0 0 0 16862 1907 16337 313868;313869;313870;313871;313872;313873;313874;313875;313876;313877;313878;313879 192086;192087;192088;192089;192090;192091;192092 192086 6 QLHAWNATHK Unmodified 1204.6101 0.61013937 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 3 2 2 2 3 1 2 1 2 1 1 1 11.236 12.016 2;3 1.1539E-06 2994 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 168 119.96 1059000000 151450000 134910000 129880000 0 0 0 140070000 130010000 120400000 0 1839300 0 105990000 27324000 90993000 0 0 0 11732000 6227600 8150500 0 0 0 16863 1960 16338 313880;313881;313882;313883;313884;313885;313886;313887;313888;313889;313890;313891;313892;313893;313894;313895;313896;313897;313898;313899;313900;313901;313902 192093;192094;192095;192096;192097;192098;192099;192100;192101 192094 9 QLHDKGVK Unmodified 923.51886 0.51886475 1917 P77554 yahJ Uncharacterized protein YahJ yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 10.344 11.157 2 0.022684 2586 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.975 50.938 1019000000 73028000 73560000 0 0 0 0 194370000 149660000 179000000 0 0 0 74772000 78208000 0 0 0 0 67360000 72126000 56919000 0 0 0 16864 1917 16339 313903;313904;313905;313906;313907;313908;313909;313910;313911;313912 192102;192103;192104;192105 192103 4 QLHSYGYK Unmodified 994.48723 0.48723027 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.463 12.143 2 0.01425 2669 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 72.138 64.467 65434000 0 0 0 0 0 0 6398900 0 0 8382400 6962200 7218800 7789100 6155800 6916900 0 0 0 6332000 4942100 4335600 0 0 0 16865 27 16340 313913;313914;313915;313916;313917;313918;313919;313920;313921;313922 192106;192107;192108 192107 3 QLIAQSWHTDEIR Unmodified 1595.8056 0.80560429 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.467 26.319 2;3 8.361E-13 12354 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 198.25 193.25 877630000 127760000 124760000 117540000 0 0 0 73803000 67712000 64715000 0 0 0 44435000 41286000 37013000 0 0 0 57348000 60571000 60675000 0 0 0 16866 43 16341 313923;313924;313925;313926;313927;313928;313929;313930;313931;313932;313933;313934;313935;313936;313937;313938;313939;313940;313941;313942;313943;313944;313945;313946 192109;192110;192111;192112;192113;192114;192115;192116;192117;192118;192119;192120;192121;192122;192123;192124;192125;192126 192112 18 QLIAQSWHTDEIRK Unmodified 1723.9006 0.90056731 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 2 3 2 1 1 1 1 1 1 20.986 21.277 2;3;4 2.1442E-16 8786 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 155.97 147.46 890130000 134630000 118200000 138530000 0 0 553300 101970000 102290000 96324000 0 0 0 29050000 22641000 29414000 0 0 0 31636000 44151000 40746000 0 0 0 16867 43 16342 313947;313948;313949;313950;313951;313952;313953;313954;313955;313956;313957;313958;313959;313960;313961;313962;313963;313964;313965;313966 192127;192128;192129;192130;192131;192132;192133;192134;192135;192136;192137;192138;192139 192131 13 QLIASLQK Unmodified 899.54402 0.54401687 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 21.031 21.277 2 0.010575 6669 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 78.178 61.236 66072000 0 0 0 0 0 0 0 0 0 0 0 0 0 9804900 10265000 0 0 0 0 0 31103000 0 421110 14478000 16868 1435 16343 313967;313968;313969;313970;313971 192140;192141 192140 1 QLIDEGYQVVLFGSAK Unmodified 1765.9251 0.92505073 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 50.721 49.23 2 0.10248 17745 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 40.725 32.814 18424000 3574100 0 0 1205400 0 0 0 0 0 4371200 3748900 3259300 0 0 0 0 0 0 0 0 0 2265000 0 0 16869 1488 16344 313972;313973;313974;313975;313976;313977 192142 192142 0 QLIDGIK Unmodified 785.4647 0.46470391 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 22.547 22.083 2 0.03333 9451 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 66.087 30.454 779650000 95087000 0 86577000 0 661210 683930 60885000 43379000 46456000 0 0 0 74719000 51519000 67279000 0 0 0 84742000 89533000 78130000 0 0 0 16870 638 16345 313978;313979;313980;313981;313982;313983;313984;313985;313986;313987;313988;313989;313990 192143 192143 1 QLIDMHVR Unmodified 1010.5331 0.5331346 830 P0AE22 aphA Class B acid phosphatase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.25 21.584 2 0.00094389 8110 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 116.54 105.67 164070000 14547000 0 16407000 0 0 0 14621000 13904000 16036000 0 0 0 17710000 18457000 16232000 0 0 0 12063000 11567000 12530000 0 0 0 16871 830 16346 313991;313992;313993;313994;313995;313996;313997;313998;313999;314000;314001 192144;192145;192146;192147;192148 192148 5 QLIEAGFETGHAYAK Unmodified 1633.81 0.81002097 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.667 24.565 3 5.2875E-05 11241 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 67.095 61.955 161400000 10098000 10373000 9935400 0 0 0 20517000 18131000 13615000 0 0 0 29345000 20578000 0 0 0 0 0 0 28808000 0 0 0 16872 180 16347 314002;314003;314004;314005;314006;314007;314008;314009;314010 192149 192149 1 QLIEMNR Unmodified 902.46439 0.46438634 1594 P51024 yaiL Uncharacterized protein YaiL yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.684 19.941 2 0.018546 7857 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 78.616 66.847 195420000 16884000 16994000 18647000 0 295500 0 16118000 16173000 13899000 2405100 2190900 1947700 13973000 14590000 9853000 1854600 0 555020 14718000 12799000 18557000 0 1529300 1437400 16873 1594 16348 314011;314012;314013;314014;314015;314016;314017;314018;314019;314020;314021;314022;314023;314024;314025;314026;314027;314028;314029;314030 192150;192151;192152;192153;192154;192155;192156 192151 5 QLIHSEHGK Unmodified 1047.5461 0.54614213 1407 P33030 yeiR Uncharacterized protein YeiR yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 2 2 6.2634 7.1369 2;3 0.057084 1533 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 33.378 24.02 21365000 0 2960600 0 0 0 0 0 0 0 0 0 0 2478100 1682700 1945800 0 0 0 4666500 3515100 4115700 0 0 0 16874 1407 16349 314031;314032;314033;314034;314035;314036;314037;314038;314039;314040 192157;192158;192159;192160;192161;192162 192157 6 QLIIDNFPK Unmodified 1086.6073 0.6073454 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 36.602 35.048 2 0.098014 12197 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 49.418 47.923 23979000 8120500 0 7827600 1716200 2075000 1707500 0 0 0 0 0 0 0 2532000 0 0 0 0 0 0 0 0 0 0 16875 1937 16350 314041;314042;314043;314044;314045;314046 192163;192164 192164 0 QLINTVHVDMLIVPLRDEEE Unmodified 2362.2202 0.22024647 847 P0AED0 uspA Universal stress protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 50.509 49.205 2;3 7.8433E-47 24031 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 344.32 339.85 11236000000 1082900000 1041700000 1027900000 111420000 93875000 88087000 1302000000 1365300000 1284800000 152880000 143970000 151760000 612890000 569350000 554380000 21627000 16066000 15479000 513670000 510710000 490620000 30167000 27272000 27387000 16876 847 16351 314047;314048;314049;314050;314051;314052;314053;314054;314055;314056;314057;314058;314059;314060;314061;314062;314063;314064;314065;314066;314067;314068;314069;314070;314071;314072;314073;314074;314075;314076;314077;314078;314079;314080;314081;314082;314083;314084;314085;314086;314087;314088 192165;192166;192167;192168;192169;192170;192171;192172;192173;192174;192175;192176;192177;192178;192179;192180;192181;192182;192183;192184;192185;192186;192187;192188;192189;192190;192191;192192;192193;192194;192195;192196;192197;192198;192199;192200;192201;192202;192203;192204;192205;192206;192207;192208;192209;192210 192198 46 QLIPQLK Unmodified 838.52764 0.52763852 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.469 27.171 2 0.1351 12497 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.246 38.399 199450000 39485000 35979000 36673000 0 0 0 10244000 11265000 9713400 0 0 508900 4906200 5339000 4991900 0 0 0 12983000 13695000 13669000 0 0 0 16877 106 16352 314089;314090;314091;314092;314093;314094;314095;314096;314097;314098;314099;314100;314101 192211 192211 0 QLIQLNTLPELEQHR Unmodified 1830.9952 0.99519598 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.008 38.53 3 4.814E-06 15107 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 91.076 87.244 127270000 0 0 0 1042800 1307100 1222000 9024100 8743700 11314000 0 0 0 5962700 6508400 4276100 5290900 4369300 5378500 12968000 12756000 14790000 5278900 8468700 8566200 16878 143 16353 314102;314103;314104;314105;314106;314107;314108;314109;314110;314111;314112;314113;314114;314115;314116;314117;314118;314119 192212;192213;192214;192215;192216 192215 5 QLIQVNPDILMR Unmodified 1438.7966 0.79661951 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.124 45.589 2 1.8846E-08 22165 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 170.47 146.44 516490000 93850000 91127000 80973000 2032000 2410900 2728100 27068000 24816000 21505000 4822600 4435100 4157400 22311000 17854000 17959000 0 0 0 32035000 30031000 28643000 2549000 2779200 2405000 16879 734 16354 314120;314121;314122;314123;314124;314125;314126;314127;314128;314129;314130;314131;314132;314133;314134;314135;314136;314137;314138;314139;314140 192217;192218;192219;192220;192221;192222;192223;192224;192225;192226;192227;192228;192229 192222 13 QLIVPLADSLKPGTYTVDWHVVSVDGHK Unmodified 3073.6237 0.62367076 577 P0AA57 yobA Protein YobA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 46.786 45.391 4;5 3.9171E-11 21953 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.11 123.06 1437100000 132060000 140390000 142430000 0 0 0 125970000 142300000 118420000 0 0 0 94121000 74590000 62283000 0 0 0 136790000 140250000 127490000 0 0 0 16880 577 16355 314141;314142;314143;314144;314145;314146;314147;314148;314149;314150;314151;314152;314153;314154;314155;314156;314157;314158;314159;314160;314161;314162;314163;314164 192230;192231;192232;192233;192234;192235;192236;192237;192238;192239;192240;192241;192242;192243;192244;192245;192246;192247;192248;192249;192250;192251;192252 192240 23 QLKPQEAQHLLDYR Unmodified 1737.9162 0.91621738 519 P0A9H1 mug G/U mismatch-specific DNA glycosylase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 23.446 22.885 3 0.029068 9713 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 44.294 34.373 114240000 33574000 38066000 26145000 0 0 0 0 0 0 0 0 0 6070300 5283500 0 0 0 0 5100000 0 0 0 0 0 16881 519 16356 314165;314166;314167;314168;314169;314170 192253 192253 0 QLLAALACPEHLYK Unmodified 1625.8599 0.85994805 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 1 2 1 36.973 35.287 2;3 2.4051E-06 16947 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.58 154.58 1816100000 240120000 204510000 193360000 0 0 0 155940000 198990000 181050000 0 0 0 74011000 96476000 98014000 0 0 0 112790000 137630000 123240000 0 0 0 16882 1154 16357 314171;314172;314173;314174;314175;314176;314177;314178;314179;314180;314181;314182;314183;314184;314185;314186;314187;314188;314189;314190;314191 192254;192255;192256;192257;192258;192259;192260;192261;192262;192263;192264;192265;192266;192267;192268;192269;192270;192271;192272;192273;192274 192267 21 QLLAAVGQSR Unmodified 1041.5931 0.59309232 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.388 21.736 2 1.8256E-06 8816 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 160.74 151.35 343660000 41025000 41351000 35689000 0 0 0 24577000 29267000 29298000 0 0 0 19312000 20259000 14110000 0 0 0 30335000 30169000 28269000 0 0 0 16883 328 16358 314192;314193;314194;314195;314196;314197;314198;314199;314200;314201;314202;314203 192275;192276;192277;192278;192279;192280;192281;192282;192283;192284;192285;192286 192278 11 QLLAEVQSICPPGVTIMNVR Unmodified 2224.1708 0.17079386 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 2 2 2 51.839 50.707 2;3 3.4196E-56 23737 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 352.62 347.34 1606800000 100750000 95073000 92362000 738040 2603700 2361200 119900000 126290000 124700000 0 7049300 0 137730000 138890000 113440000 2999300 3470000 2271500 179390000 180600000 176230000 0 0 0 16884 583 16359 314204;314205;314206;314207;314208;314209;314210;314211;314212;314213;314214;314215;314216;314217;314218;314219;314220;314221;314222;314223;314224;314225;314226;314227;314228;314229;314230;314231;314232;314233;314234 192287;192288;192289;192290;192291;192292;192293;192294;192295;192296;192297;192298;192299;192300;192301;192302;192303;192304;192305;192306;192307;192308;192309 192306 22 QLLAPVNSISR Unmodified 1196.6877 0.68772099 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.543 28.195 2 1.8413E-05 13382 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.08 126.92 1024700000 153590000 137470000 130770000 0 0 0 106520000 92733000 99237000 0 0 0 40404000 47930000 41163000 0 0 0 50983000 52044000 51613000 6411300 6820100 7022000 16885 510 16360 314235;314236;314237;314238;314239;314240;314241;314242;314243;314244;314245;314246;314247;314248;314249 192310;192311;192312;192313;192314;192315;192316;192317;192318;192319;192320;192321;192322 192311 13 QLLDAALK Unmodified 870.51747 0.51746776 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.149 26.878 2 0.0026172 9973 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 98.997 22.962 109170000 0 0 0 0 0 0 0 9627000 9297000 11480000 16163000 14561000 0 0 0 3054900 1825400 3017700 10875000 10944000 8539000 2621200 3976700 3189600 16886 500 16361 314250;314251;314252;314253;314254;314255;314256;314257;314258;314259;314260;314261;314262;314263 192323 192323 1 QLLDEVQSICPPHVTIMQVR Unmodified 2362.2137 0.21372131 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 46.598 45.207 2;3 2.381E-56 22008 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 335.75 329.17 3867900000 295880000 292320000 230400000 2833500 2561700 3164500 343120000 378730000 348370000 3259000 4117700 3673500 308400000 303710000 283000000 0 4237600 2450700 340000000 351670000 365950000 0 0 0 16887 876 16362 314264;314265;314266;314267;314268;314269;314270;314271;314272;314273;314274;314275;314276;314277;314278;314279;314280;314281;314282;314283;314284;314285;314286;314287;314288;314289;314290;314291;314292;314293;314294;314295 192324;192325;192326;192327;192328;192329;192330;192331;192332;192333;192334;192335;192336;192337;192338;192339;192340;192341;192342;192343;192344;192345;192346 192334 23 QLLEALR Unmodified 841.50215 0.50215205 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.308 26.175 2 0.003555 12011 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.49 39.753 109840000 3252200 4933100 3955200 547980 0 657780 7477600 7397400 8038800 4711300 2461200 3818400 8187700 9004100 7133300 1281200 966940 1000500 12996000 9648100 12367000 0 0 0 16888 1781 16363 314296;314297;314298;314299;314300;314301;314302;314303;314304;314305;314306;314307;314308;314309;314310;314311;314312;314313;314314;314315 192347;192348;192349;192350;192351;192352 192350 6 QLLEEESR Unmodified 1002.4982 0.49818889 1690 P64585 yqjE Inner membrane protein YqjE yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 15.195 16.063 2 0.0012638 5550 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.31 88.179 164150000 13319000 0 11610000 1319600 1297400 1394600 54700000 58963000 0 0 0 0 7715500 6259800 5832600 0 0 0 0 1743200 0 0 0 0 16889 1690 16364 314316;314317;314318;314319;314320;314321;314322;314323;314324;314325;314326 192353;192354;192355;192356;192357;192358;192359;192360 192353 6 QLLEEESREQ Unmodified 1259.5994 0.59935949 1690 P64585 yqjE Inner membrane protein YqjE yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.086 16.77 2 2.5418E-06 4787 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 164.57 125.54 127690000 0 3303700 3400600 3540300 3446000 3148900 16335000 16960000 16727000 16629000 12808000 14064000 2413900 2368800 0 0 0 0 4801600 3545400 4196100 0 0 0 16890 1690 16365 314327;314328;314329;314330;314331;314332;314333;314334;314335;314336;314337;314338;314339;314340;314341;314342 192361;192362;192363;192364;192365;192366;192367 192362 7 QLLEYDDVANDQR Unmodified 1577.7322 0.73216458 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.854 28.303 2 4.5788E-09 10396 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 202.56 198.91 388020000 24588000 25161000 0 0 1160400 927630 42057000 33262000 34151000 11126000 9331600 4680200 24104000 22907000 23571000 0 0 0 43395000 34010000 33266000 6615700 6903500 6804300 16891 1057 16366 314343;314344;314345;314346;314347;314348;314349;314350;314351;314352;314353;314354;314355;314356;314357;314358;314359;314360;314361 192368;192369;192370;192371;192372;192373;192374;192375;192376;192377 192376 6 QLLEYDDVANDQRR Unmodified 1733.8333 0.83327561 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 2 3 2 1 2 2 2 2 2 2 23.932 23.068 2;3 6.1321E-12 8091 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 159.08 157.09 305500000 0 0 1881500 4882400 5449300 4723800 0 0 0 45782000 41898000 40189000 0 2082100 0 33212000 24640000 26461000 0 0 0 25919000 20396000 27984000 16892 1057 16367 314362;314363;314364;314365;314366;314367;314368;314369;314370;314371;314372;314373;314374;314375;314376;314377;314378;314379;314380;314381;314382;314383;314384;314385;314386;314387;314388 192378;192379;192380;192381;192382;192383;192384;192385;192386;192387;192388;192389 192386 12 QLLGVLVVQQR Unmodified 1251.7663 0.76630566 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.182 38.318 2 0.0024921 18392 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.476 84.476 50855000 6979500 5879900 5035200 0 1019300 856740 2873900 3101000 3006500 1464400 1917600 0 0 0 2039600 0 0 0 5888200 5751100 5042000 0 0 0 16893 1459 16368 314389;314390;314391;314392;314393;314394;314395;314396;314397;314398;314399;314400;314401;314402 192390;192391 192391 0 QLLHLMIHSLYSNK Unmodified 1695.913 0.91304625 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 33.228 31.737 3;4 0.00018316 15419 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 76.311 60.212 503150000 42679000 55615000 41395000 0 1278600 1629700 54515000 51243000 39564000 0 959340 0 37079000 33223000 23346000 0 0 0 42192000 42946000 35487000 0 0 0 16894 295 16369 314403;314404;314405;314406;314407;314408;314409;314410;314411;314412;314413;314414;314415;314416;314417;314418;314419;314420;314421;314422;314423;314424;314425;314426;314427;314428;314429;314430 192392;192393;192394;192395;192396;192397;192398;192399;192400;192401;192402;192403;192404;192405;192406;192407;192408;192409;192410;192411;192412;192413;192414;192415 192395 24 QLLMMSGFDR Unmodified 1196.5682 0.56819948 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.058 39.393 2 0.0015447 18314 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 87.639 79.299 928880000 55601000 54209000 46873000 0 0 0 76470000 80086000 80861000 0 0 0 85093000 75726000 70930000 0 0 0 97667000 99609000 105750000 0 0 0 16895 1189 16370 314431;314432;314433;314434;314435;314436;314437;314438;314439;314440;314441;314442 192416;192417;192418;192419;192420;192421 192421 0 QLLMVLLENIPEQESRPK Unmodified 2136.1613 0.16127503 523 P0A9H9 cheZ Protein phosphatase CheZ yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 50.812 49.48 3 6.6606E-07 17875 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 102.58 102.58 173000000 49180000 50558000 40398000 9977200 11312000 9677100 0 0 0 0 1896200 0 0 0 0 0 0 0 0 0 0 0 0 0 16896 523 16371 314443;314444;314445;314446;314447;314448;314449 192422;192423;192424;192425 192422 4 QLLNEFPELK Unmodified 1229.6656 0.66558856 1654 P63020 nfuA Fe/S biogenesis protein NfuA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.316 39.628 2 1.026E-08 19249 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 182.29 172.9 2207900000 198820000 207350000 180270000 6672700 5364400 6190500 145800000 163690000 145500000 13077000 7696200 9078100 151830000 122380000 122660000 8734100 0 5454900 238580000 227850000 221600000 6149800 6142300 7001300 16897 1654 16372 314450;314451;314452;314453;314454;314455;314456;314457;314458;314459;314460;314461;314462;314463;314464;314465;314466;314467;314468;314469;314470;314471;314472 192426;192427;192428;192429;192430;192431;192432;192433;192434;192435;192436;192437;192438;192439;192440;192441 192434 15 QLLPIYDKPMIYYPLSTLMLAGIR Unmodified 2808.5322 0.5322019 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 55.379 53.888 3 4.5502E-05 26558 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.681 77.647 402950000 36583000 0 29793000 0 0 0 28028000 30683000 30003000 0 0 0 0 37109000 32608000 0 0 0 58631000 61909000 57604000 0 0 0 16898 1489 16373 314473;314474;314475;314476;314477;314478;314479;314480;314481;314482 192442;192443;192444;192445;192446 192442 2 QLLQELQESFGGPTGEHNSPR Unmodified 2323.1193 0.11928687 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.6 37.985 3 3.9704E-35 18461 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 219.87 218.95 524760000 37207000 35140000 29746000 6620300 7736700 8095300 20937000 24677000 17496000 23013000 30848000 31469000 19272000 18721000 21492000 12261000 7277000 9027100 38135000 34593000 34166000 17992000 21029000 17815000 16899 190 16374 314483;314484;314485;314486;314487;314488;314489;314490;314491;314492;314493;314494;314495;314496;314497;314498;314499;314500;314501;314502;314503;314504;314505;314506 192447;192448;192449;192450;192451;192452;192453;192454;192455;192456;192457;192458;192459;192460;192461;192462;192463;192464 192456 18 QLLTDNMDILHAMK Unmodified 1641.8218 0.82184798 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 42.204 40.453 2;3 7.8472E-06 18831 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 138.22 129.99 1086600000 36673000 32225000 24978000 15738000 16050000 12404000 98908000 95761000 86268000 42376000 40535000 35171000 65367000 58445000 53251000 13551000 16708000 8732700 88105000 101430000 96714000 26680000 2337200 18218000 16900 595 16375 314507;314508;314509;314510;314511;314512;314513;314514;314515;314516;314517;314518;314519;314520;314521;314522;314523;314524;314525;314526;314527;314528;314529;314530;314531;314532;314533;314534;314535;314536;314537;314538;314539;314540;314541;314542;314543;314544;314545 192465;192466;192467;192468;192469;192470;192471;192472;192473;192474;192475;192476;192477;192478;192479;192480;192481;192482;192483;192484;192485;192486;192487 192487 23 QLLWGNR Unmodified 885.48209 0.48208531 1767 P75745 ybgK Uncharacterized protein YbgK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.441 26.294 2 0.0017281 11747 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.86 120.65 83935000 11119000 11938000 11177000 0 0 0 8266200 6047200 6080900 0 0 0 5259900 3520200 2639900 0 0 0 6744100 5242600 5900300 0 0 0 16901 1767 16376 314546;314547;314548;314549;314550;314551;314552;314553;314554;314555;314556;314557 192488;192489;192490 192490 3 QLMEQCAK Unmodified 1006.4576 0.4575864 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.064 12.896 2 0.0055287 3583 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.472 78.541 414830000 84526000 64784000 75548000 0 0 0 38204000 47061000 34700000 0 0 0 9363400 4733000 6285200 0 0 0 16499000 13577000 19545000 0 0 0 16902 1258 16377 314558;314559;314560;314561;314562;314563;314564;314565;314566;314567;314568;314569 192491;192492;192493;192494;192495 192492 5 QLMGFGETR Unmodified 1037.4964 0.49641475 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 27.105 25.663 2 0.00011637 11631 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 133.86 119.87 157840000 0 0 0 0 0 0 38449000 32869000 36891000 0 0 0 0 0 0 0 0 0 24181000 25453000 0 0 0 0 16903 219 16378 314570;314571;314572;314573;314574 192496 192496 1 QLMNVLHVITR Unmodified 1322.7493 0.74927539 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.247 33.765 3 0.0027831 15533 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 65.179 60.839 285250000 28494000 23649000 22487000 0 0 0 36390000 41460000 33876000 0 0 0 15674000 18823000 12136000 0 0 0 18920000 17097000 16239000 0 0 0 16904 709 16379 314575;314576;314577;314578;314579;314580;314581;314582;314583;314584;314585;314586 192497;192498;192499;192500;192501;192502;192503;192504;192505 192503 9 QLNAVNR Unmodified 813.4457 0.4456998 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.489 12.027 2 0.00043229 2594 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 154.29 126.98 8022600000 22580000 25396000 20689000 0 0 0 22167000 28073000 22723000 1270600000 1128200000 899660000 22952000 21390000 22755000 988420000 926370000 796780000 28710000 30987000 28991000 640050000 490690000 584450000 16905 1616 16380 314587;314588;314589;314590;314591;314592;314593;314594;314595;314596;314597;314598;314599;314600;314601;314602;314603;314604;314605;314606;314607 192506;192507;192508;192509;192510;192511 192507 6 QLNGATIAEPAPYR Unmodified 1499.7732 0.77324153 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.562 25.516 2 5.0456E-07 8438 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 164.65 156.43 44539000 4321600 4814700 2947600 437540 0 0 0 0 0 1525200 1732700 1709400 0 0 0 12344000 5478200 7081300 0 0 0 1194900 0 951580 16906 222 16381 314608;314609;314610;314611;314612;314613;314614;314615;314616;314617;314618;314619 192512;192513;192514 192512 3 QLNGATIAEPAPYRDIQGLEHFDK Unmodified 2682.3402 0.34017869 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By MS/MS By matching 1 1 35.73 35.863 4 0.095475 12158 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 29.745 27.203 11433000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5003100 6429700 0 0 0 0 0 0 16907 222 16382 314620;314621 192515 192515 1 QLNQVEILGK Unmodified 1140.6503 0.65027285 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 28.159 26.937 2 1.9371E-05 11845 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 149.82 100.72 1430700000 186800000 188440000 157530000 871460 0 0 73976000 64061000 58543000 0 0 0 100980000 100900000 104800000 0 0 0 123490000 155250000 115090000 0 0 0 16908 638 16383 314622;314623;314624;314625;314626;314627;314628;314629;314630;314631;314632;314633;314634 192516;192517;192518;192519;192520;192521;192522;192523;192524;192525;192526;192527 192525 12 QLNSAAVYR Unmodified 1020.5352 0.53524309 905 P0AF20 nagC N-acetylglucosamine repressor yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 15.275 16.087 2 0.010994 5437 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.501 51.715 8279600 0 2897200 0 407110 0 259930 2145900 0 0 0 0 0 0 0 0 0 0 0 2569500 0 0 0 0 0 16909 905 16384 314635;314636;314637;314638;314639;314640 192528;192529;192530 192530 1 QLNVFEGER Unmodified 1090.5407 0.5407224 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 3 1 1 5 3 4 1 4 4 3 30.265 29.19 2 6.6406E-06 8640 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 171.38 157.39 24231000000 217020000 217640000 210520000 10749000 9139800 9479500 146790000 149770000 141070000 1131500000 1556500000 1457900000 119510000 120290000 0 4377800000 4221800000 4427400000 0 0 206040000 1946600000 1689200000 1864400000 16910 458 16385 314641;314642;314643;314644;314645;314646;314647;314648;314649;314650;314651;314652;314653;314654;314655;314656;314657;314658;314659;314660;314661;314662;314663;314664;314665;314666;314667;314668;314669;314670;314671;314672;314673;314674;314675;314676;314677;314678;314679;314680;314681 192531;192532;192533;192534;192535;192536;192537;192538;192539;192540;192541;192542;192543;192544;192545;192546;192547;192548;192549;192550;192551;192552;192553;192554;192555;192556;192557;192558;192559;192560;192561;192562;192563;192564;192565;192566;192567;192568;192569;192570;192571;192572;192573;192574;192575 192570 40 QLNVFEGERVER Unmodified 1474.7528 0.75284044 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 3 1 2 2 2 23.056 22.414 2;3 3.1005E-17 6709 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 222.3 194.81 2832800000 2769000 3843300 3594000 0 0 0 0 0 0 99390000 80873000 51482000 0 0 0 625390000 565530000 702350000 2218100 0 0 209160000 242190000 244020000 16911 458 16386 314682;314683;314684;314685;314686;314687;314688;314689;314690;314691;314692;314693;314694;314695;314696;314697;314698;314699;314700;314701;314702;314703;314704 192576;192577;192578;192579;192580;192581;192582;192583;192584;192585;192586;192587;192588;192589;192590;192591;192592;192593;192594;192595;192596;192597 192584 22 QLNVFEGERVERGDVISDGPEAPHDILR Unmodified 3146.5745 0.57448873 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 34.39 33.498 4;5 2.1515E-07 11927 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 91.722 68.156 121140000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31303000 27535000 28150000 0 0 0 7588100 12768000 13800000 16912 458 16387 314705;314706;314707;314708;314709;314710;314711;314712;314713;314714;314715 192598;192599;192600;192601;192602;192603;192604;192605;192606 192599 9 QLPALPDELK Unmodified 1122.6285 0.62847478 1014 P0AGF2 csdE Sulfur acceptor protein CsdE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.43 34.873 2 0.0031189 16013 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 74.92 67.86 139600000 17055000 14140000 13520000 0 0 0 8052000 9115500 10083000 0 0 0 10385000 9822000 9059300 0 0 0 13444000 12781000 12146000 0 0 0 16913 1014 16388 314716;314717;314718;314719;314720;314721;314722;314723;314724;314725;314726;314727 192607;192608 192608 2 QLPCPAELLR Unmodified 1195.6383 0.63832796 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.978 38.187 2 0.00019004 18221 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.19 109.66 8984000000 1601100000 1379500000 1364800000 7380200 6337000 6960600 870320000 676160000 710710000 2630000 0 1626300 400420000 336190000 376570000 0 0 0 414970000 425250000 403150000 0 0 0 16914 397 16389 314728;314729;314730;314731;314732;314733;314734;314735;314736;314737;314738;314739;314740;314741;314742;314743;314744 192609;192610;192611;192612;192613;192614;192615;192616;192617;192618;192619;192620;192621;192622;192623 192620 15 QLPDGHNFTLMCR Unmodified 1587.7286 0.7286163 962 P0AFR4 yciO Uncharacterized protein YciO yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.312 28.866 3 0.11832 13449 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 21.351 16.46 114910000 20056000 15883000 14253000 0 1984700 1903600 4224300 7315300 5483600 0 910550 0 4229500 8164400 5079300 0 0 0 8222100 8484900 8715100 0 0 0 16915 962 16390 314745;314746;314747;314748;314749;314750;314751;314752;314753;314754;314755;314756;314757;314758;314759 192624;192625 192625 2 QLQANIEVQK Unmodified 1169.6404 0.64043645 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.889 19.178 2 0.0062778 7495 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 68.016 38.867 36949000 0 0 0 1120300 0 1326400 5096300 0 5317600 3673000 1807900 1819100 3632800 2208300 0 0 0 0 3117900 5368800 0 0 1501100 959410 16916 1300 16391 314760;314761;314762;314763;314764;314765;314766;314767;314768;314769;314770;314771;314772 192626 192626 0 QLQDAYALSSQQK Unmodified 1478.7365 0.73652168 1969 Q46939 yqeF Probable acetyl-CoA acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 22.309 21.768 2 3.2355E-05 9034 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 103.22 99.334 20966000 0 0 0 0 0 0 0 0 0 2059400 1620200 1384800 0 0 0 0 0 0 4619400 5262600 4736700 1282900 0 0 16917 1969 16392 314773;314774;314775;314776;314777;314778;314779 192627 192627 1 QLQEVDPVAAAR Unmodified 1295.6834 0.68336389 1118 P16384 miaA tRNA dimethylallyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 23.977 23.133 2 0.065885 10196 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 43.282 38.983 30072000 5342000 5180300 6713000 0 0 0 0 0 3401900 0 0 0 0 0 0 0 0 0 4796200 4638300 0 0 0 0 16918 1118 16393 314780;314781;314782;314783;314784;314785 192628 192628 0 QLQNMNMAQLQAEIAK Unmodified 1829.9128 0.91278826 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.7 38.898 2 0.027609 15824 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.705 66.272 70431000 4165900 7600000 4543600 1334100 1322700 1331100 6667100 6895800 6121200 3021800 0 3734600 3919400 3633700 3045100 0 0 0 4309800 4166500 3479600 0 1138800 0 16919 1765 16394 314786;314787;314788;314789;314790;314791;314792;314793;314794;314795;314796;314797;314798;314799;314800;314801;314802;314803 192629 192629 0 QLQPLVNHDS Unmodified 1149.5778 0.57783619 776 P0ADA1 tesA Acyl-CoA thioesterase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 18.348 18.936 2 0.00058603 7102 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 93.429 88.081 123880000 20363000 17269000 14362000 0 0 0 8630400 10513000 7997400 0 0 0 9335300 6422500 0 0 0 0 7452000 10686000 10845000 0 0 0 16920 776 16395 314804;314805;314806;314807;314808;314809;314810;314811;314812;314813;314814 192630;192631;192632;192633;192634;192635;192636;192637;192638 192634 9 QLQQNATQAEVNR Unmodified 1498.7488 0.7488177 1668 P64429 ypfJ Uncharacterized protein YpfJ yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 12.543 13.403 2 0.00053069 3918 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 96.229 89.696 90859000 7209900 0 0 0 0 0 12887000 12426000 0 0 0 0 10827000 7086400 7406900 0 0 0 11573000 10917000 10527000 0 0 0 16921 1668 16396 314815;314816;314817;314818;314819;314820;314821;314822;314823 192639;192640 192640 2 QLQQPEIQPNAAHLALAK Unmodified 1969.0745 0.074508932 1799 P75960 cobB NAD-dependent protein deacylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.565 28.089 3 3.1674E-07 13016 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 71.286 67.523 262220000 27637000 22652000 24775000 0 0 0 15773000 14235000 14670000 7533600 4772700 5675100 13938000 18174000 15813000 0 0 0 22070000 20123000 29045000 0 5331300 0 16922 1799 16397 314824;314825;314826;314827;314828;314829;314830;314831;314832;314833;314834;314835;314836;314837;314838;314839 192641;192642;192643 192642 3 QLQTILFEK Unmodified 1118.6336 0.63356015 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.039 33.809 2 0.00026541 16518 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.87 33.114 458500000 46686000 31175000 29714000 0 0 0 48043000 43525000 42399000 0 0 0 24435000 28614000 25484000 7193500 6206800 6571900 38041000 39941000 40471000 0 0 0 16923 37 16398 314840;314841;314842;314843;314844;314845;314846;314847;314848;314849;314850;314851;314852;314853;314854 192644;192645;192646;192647;192648;192649;192650;192651;192652;192653;192654;192655 192646 12 QLREELLAIAPVFGQK Unmodified 1811.0305 0.030518852 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 46.577 45.355 2;3 9.0454E-11 22563 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.02 147.51 654440000 39303000 36473000 36243000 0 0 0 41190000 39530000 43793000 0 0 0 56125000 43415000 41691000 40378000 43010000 45287000 53533000 51595000 42871000 0 0 0 16924 712 16399 314855;314856;314857;314858;314859;314860;314861;314862;314863;314864;314865;314866;314867;314868;314869;314870;314871;314872;314873;314874;314875;314876;314877;314878;314879;314880;314881 192656;192657;192658;192659;192660;192661;192662;192663;192664;192665;192666;192667;192668;192669;192670;192671;192672;192673;192674;192675;192676;192677;192678;192679 192662 17 QLSAWEAGILTR Unmodified 1343.7197 0.7197494 1688 P64574 yghW Uncharacterized protein YghW yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.196 40.213 2 1.805E-08 19470 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 170.89 152.83 131810000 0 0 0 0 0 0 8911100 8218400 9354100 7184600 7589500 6285100 5974700 7247500 8397300 0 0 0 15450000 19788000 14591000 6257200 6562300 0 16925 1688 16400 314882;314883;314884;314885;314886;314887;314888;314889;314890;314891;314892;314893;314894;314895 192680;192681;192682;192683;192684;192685;192686;192687 192684 8 QLSELIYSR Unmodified 1107.5924 0.59242362 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.454 28.962 2 6.5335E-06 13410 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 171.53 136.18 1315600000 97012000 85692000 72017000 0 0 0 127080000 120120000 107750000 1867000 2242900 1512300 88042000 91169000 79880000 0 0 596480 150920000 145440000 142830000 1423700 0 0 16926 60 16401 314896;314897;314898;314899;314900;314901;314902;314903;314904;314905;314906;314907;314908;314909;314910;314911;314912 192688;192689 192689 2 QLSEQQKQAALAK Unmodified 1441.7889 0.7888916 1594 P51024 yaiL Uncharacterized protein YaiL yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.795 25.648 2 0.023022 11505 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 57.859 43.74 1084400000 324090000 274890000 258120000 0 0 0 38309000 39733000 36967000 0 0 0 14200000 15318000 12580000 0 0 0 25326000 20521000 24302000 0 0 0 16927 1594 16402 314913;314914;314915;314916;314917;314918;314919;314920;314921;314922;314923;314924 192690;192691;192692;192693;192694;192695;192696;192697;192698;192699 192697 10 QLSFFWRPEEVDVSR Unmodified 1893.9373 0.93734675 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 1 1 1 2 2 44.873 43.297 2;3 8.2612E-09 21023 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 115.8 111.7 1356000000 98794000 109850000 93604000 0 0 0 107280000 115240000 96391000 0 0 0 99565000 88927000 85489000 0 0 0 133750000 174660000 152430000 0 0 0 16928 1759 16403 314925;314926;314927;314928;314929;314930;314931;314932;314933;314934;314935;314936;314937;314938;314939;314940;314941;314942 192700;192701;192702;192703;192704;192705;192706;192707;192708;192709;192710;192711;192712 192709 13 QLSIADVMTPGGIR Unmodified 1456.7708 0.77079869 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.037 43.84 2 4.3647E-08 21276 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.91 119.4 341400000 34690000 30214000 36942000 0 0 0 23701000 28326000 26457000 0 0 0 20257000 18549000 21691000 3742400 0 1481300 37445000 29609000 28293000 0 0 0 16929 1565 16404 314943;314944;314945;314946;314947;314948;314949;314950;314951;314952;314953;314954;314955;314956 192713;192714;192715;192716;192717;192718;192719;192720;192721;192722;192723;192724 192720 12 QLSLAPGER Unmodified 969.52434 0.52434406 1286 P26648 ftsP Cell division protein FtsP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.145 19.71 2 0.000772 7425 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.64 68.803 131090000 11005000 7543100 8525800 0 0 0 12090000 12392000 10316000 0 0 0 9090700 8237100 9280400 0 0 0 13386000 12762000 16464000 0 0 0 16930 1286 16405 314957;314958;314959;314960;314961;314962;314963;314964;314965;314966;314967;314968 192725;192726;192727;192728;192729;192730 192727 6 QLSLLLR Unmodified 841.53854 0.53853756 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 34.927 33.319 2 7.7478E-05 16093 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.05 0 5186800000 155100000 143970000 133660000 28282000 26600000 28148000 381860000 374420000 405100000 134570000 138470000 127710000 373800000 388710000 372760000 46385000 31748000 36629000 525410000 505050000 506280000 110920000 105860000 105340000 16931 997 16406 314969;314970;314971;314972;314973;314974;314975;314976;314977;314978;314979;314980;314981;314982;314983;314984;314985;314986;314987;314988;314989;314990;314991;314992;314993;314994;314995;314996;314997;314998;314999;315000;315001;315002;315003;315004;315005;315006;315007;315008;315009;315010;315011;315012;315013 192731;192732;192733;192734;192735;192736;192737;192738;192739;192740;192741;192742;192743;192744;192745;192746;192747;192748;192749;192750;192751;192752;192753;192754;192755;192756;192757;192758;192759;192760;192761;192762 192755 32 QLSLPPQVVFEAILTR Unmodified 1810.0353 0.035269879 1751 P69829 ptsN Nitrogen regulatory protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.24 53.766 2 8.0427E-08 26382 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 111.94 106.44 480100000 53549000 48475000 42165000 0 0 0 34178000 28378000 31140000 0 0 0 38266000 32398000 30473000 0 0 0 41665000 52111000 47305000 0 0 0 16932 1751 16407 315014;315015;315016;315017;315018;315019;315020;315021;315022;315023;315024;315025 192763;192764;192765;192766;192767;192768;192769;192770 192767 2 QLSRDDIVWTYSGVRPLCDDESDSPQAITR Unmodified 3478.6423 0.6423103 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 2 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 40.882 38.902 4 0.072613 15775 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 33.358 32.891 39913000 0 0 0 0 0 0 0 0 0 10586000 9345900 10631000 0 0 0 5196900 0 0 0 0 0 4153500 0 0 16933 1088 16408 315026;315027;315028;315029;315030 192771 192771 1 QLSTEPSLR Unmodified 1029.5455 0.54547343 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.561 18.025 2 0.00036241 6691 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 112.41 61.075 128210000 5135500 6892200 5376500 2690700 3067200 2524000 11558000 0 10735000 5536800 4029100 4211100 12411000 0 10681000 1577800 0 0 12686000 8561200 10909000 3316800 3493900 2816000 16934 807 16409 315031;315032;315033;315034;315035;315036;315037;315038;315039;315040;315041;315042;315043;315044;315045;315046;315047;315048;315049;315050;315051 192772;192773;192774;192775;192776;192777;192778;192779;192780;192781;192782;192783;192784;192785 192776 14 QLTAGVFQPLDK Unmodified 1315.7136 0.71360139 1363 P31133 potF Putrescine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 36.186 34.691 2 0.0001064 16532 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 92.611 89.201 43946000 11515000 15961000 12505000 0 0 0 2390800 0 0 0 0 0 1574900 0 0 0 0 0 0 0 0 0 0 0 16935 1363 16410 315052;315053;315054;315055;315056 192786;192787;192788 192788 3 QLTAQAPVDPIVLGK Unmodified 1548.8875 0.88754301 379 P0A7X6 rimM Ribosome maturation factor RimM yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.125 37.444 2 1.0492E-08 18675 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.58 146.67 144960000 24030000 20359000 21459000 0 374150 449410 15120000 15697000 11540000 0 0 0 4125700 3631800 3780900 0 0 0 8216800 6709700 9470200 0 0 0 16936 379 16411 315057;315058;315059;315060;315061;315062;315063;315064;315065;315066;315067;315068;315069;315070 192789;192790;192791;192792;192793 192789 5 QLTATGFWPLYR Unmodified 1451.7561 0.75613491 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 50.375 49.04 2 1.3644E-06 23755 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 148.94 142.35 109360000 8944300 7937400 11192000 0 0 0 0 0 0 0 1265200 0 14267000 10973000 15623000 0 0 0 0 20492000 18667000 0 0 0 16937 1609 16412 315071;315072;315073;315074;315075;315076;315077;315078;315079 192794;192795;192796;192797 192794 2 QLTHVLSDDSVAEQLK Unmodified 1781.9159 0.9159426 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 28.601 27.217 2;3 1.5645E-30 12623 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 278.06 269.36 626040000 56301000 50301000 38555000 6190100 4873100 3314900 38926000 41588000 49566000 2399900 2927300 2626000 43942000 51516000 57429000 0 0 0 56352000 62438000 51476000 1771500 0 3545600 16938 1748 16413 315080;315081;315082;315083;315084;315085;315086;315087;315088;315089;315090;315091;315092;315093;315094;315095;315096;315097;315098;315099;315100;315101;315102;315103;315104;315105;315106;315107;315108;315109;315110;315111;315112;315113 192798;192799;192800;192801;192802;192803;192804;192805;192806;192807;192808;192809;192810 192802 13 QLTILGSTGSIGCSTLDVVR Unmodified 2076.0885 0.088504016 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.65 47.319 2 7.9188E-15 23030 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 153.24 140.1 60995000 3937400 3593500 3087700 0 0 0 5514100 6749300 7168800 0 0 0 5207300 3686700 4104300 0 0 0 7032300 5910500 5002900 0 0 0 16939 1575 16414 315114;315115;315116;315117;315118;315119;315120;315121;315122;315123;315124;315125 192811;192812 192811 2 QLTLWQACR Unmodified 1174.5917 0.59171211 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 32.572 31.534 2 4.8512E-05 10319 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 149.4 147.05 51095000 0 0 5831600 0 0 0 5703900 4208800 3699200 0 0 0 0 0 0 11663000 7225300 7941300 4821600 0 0 0 0 0 16940 80 16415 315126;315127;315128;315129;315130;315131;315132;315133 192813;192814;192815 192814 3 QLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGR Unmodified 3377.6827 0.68265897 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 1 1 2 2 2 1 1 1 2 1 1 1 52.255 50.973 3;4 7.4371E-44 24922 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 220.09 218.33 175970000 20395000 18482000 12583000 6064300 0 0 25963000 23438000 10281000 0 0 0 7123500 5894300 10974000 0 0 0 9930600 14071000 10773000 0 0 0 16941 235 16416 315134;315135;315136;315137;315138;315139;315140;315141;315142;315143;315144;315145;315146;315147;315148;315149;315150;315151 192816;192817;192818 192817 3 QLVAQLEK Unmodified 927.53893 0.53893149 1846 P76270 msrC Free methionine-R-sulfoxide reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.246 19.749 2 0.00081084 7722 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 122.18 78.059 993260000 96578000 95545000 73948000 1868600 1727100 0 86097000 89126000 90475000 0 0 0 63833000 64149000 58809000 0 0 0 92067000 84242000 92458000 0 1227800 1109900 16942 1846 16417 315152;315153;315154;315155;315156;315157;315158;315159;315160;315161;315162;315163;315164;315165;315166;315167 192819;192820;192821;192822;192823;192824;192825;192826;192827;192828;192829;192830 192821 12 QLVDLGVK Unmodified 870.51747 0.51746776 1246 P24232 hmp Flavohemoprotein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.958 26.34 2 0.023522 12015 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.081 35.964 53598000 0 0 0 0 0 0 18390000 16296000 18912000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16943 1246 16418 315168;315169;315170;315171;315172;315173;315174;315175;315176;315177;315178 192831;192832;192833;192834;192835;192836;192837;192838;192839;192840;192841 192837 11 QLVLNLVSSPGSGK Unmodified 1397.7878 0.78782897 603 P0AAN3 hypB Hydrogenase isoenzymes nickel incorporation protein HypB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 37.415 35.647 2 7.1996E-08 17134 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 177.57 153.05 287480000 10582000 9896400 9177500 0 0 0 31516000 42704000 37769000 8503800 0 0 24927000 26750000 23454000 0 0 0 23679000 15232000 23288000 0 0 0 16944 603 16419 315179;315180;315181;315182;315183;315184;315185;315186;315187;315188;315189;315190;315191 192842;192843;192844;192845;192846 192843 5 QLVLSPDAR Unmodified 997.55564 0.55564418 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 23.114 22.362 2 0.00034485 7080 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 113.94 72.44 49350000 0 0 0 14227000 18627000 16497000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16945 1587 16420 315192;315193;315194 192847;192848;192849 192848 3 QLVNGTVDGR Unmodified 1057.5516 0.55162144 322 P0A7A2 gpmB Probable phosphoglycerate mutase GpmB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 14.929 15.774 2 0.078142 5309 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 47.603 26.075 16374000 2875800 0 0 0 0 0 0 0 0 0 0 0 2316000 0 2530800 0 0 0 3536100 0 5115100 0 0 0 16946 322 16421 315195;315196;315197;315198;315199 192850 192850 0 QLVTAANWVK Unmodified 1128.6291 0.62914348 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.873 29.516 2 0.00048805 13166 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 116.73 111.07 736850000 66556000 58303000 50034000 0 0 0 70673000 66871000 68213000 0 0 0 58730000 46014000 43656000 0 0 0 67467000 69553000 70781000 0 0 0 16947 1215 16422 315200;315201;315202;315203;315204;315205;315206;315207;315208;315209;315210;315211 192851;192852;192853;192854;192855;192856;192857;192858;192859;192860;192861;192862 192862 12 QLWPHTK Unmodified 908.48684 0.48683634 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.276 14.954 2 0.0035119 4741 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.67 107.67 376940000 33270000 0 0 0 0 0 47135000 40454000 39596000 683900 762140 666600 31339000 27159000 30335000 0 0 0 41347000 42369000 41823000 0 0 0 16948 445 16423 315212;315213;315214;315215;315216;315217;315218;315219;315220;315221;315222;315223;315224;315225 192863;192864;192865;192866;192867;192868;192869;192870;192871;192872;192873 192866 11 QLWWGHR Unmodified 981.49332 0.4933187 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 23.428 22.59 2 0.0012721 10077 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.94 106.53 151220000 0 0 0 0 0 0 53770000 34050000 32344000 0 0 0 0 0 0 0 0 1102100 29958000 0 0 0 0 0 16949 158 16424 315226;315227;315228;315229;315230 192874;192875;192876 192874 3 QLYALLY Unmodified 882.48511 0.485105 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.062 51.622 2 0.061121 25275 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 61.006 58.2 54241000 3665100 4552300 4561600 0 0 0 4401700 4235400 3689800 0 0 0 3649700 6415500 4341200 0 0 0 6109200 4009400 4610000 0 0 0 16950 1903 16425 315231;315232;315233;315234;315235;315236;315237;315238;315239;315240;315241;315242 192877 192877 1 QLYDDLLR Unmodified 1034.5397 0.53965977 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 36.789 35.11 2 0.0039041 16844 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.142 68.195 43298000 9989100 13488000 10496000 0 310240 0 2411400 0 2890400 0 0 0 0 0 0 0 0 0 0 1837100 1876200 0 0 0 16951 1814 16426 315243;315244;315245;315246;315247;315248;315249;315250 192878 192878 1 QLYNAPTIVER Unmodified 1302.6932 0.6932003 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.866 27.473 2 2.8417E-10 12936 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 188.3 182.52 3952900000 237180000 224030000 183290000 1204200 1259900 1267900 331190000 340450000 325890000 0 0 2714200 325840000 301870000 304570000 0 0 0 460640000 464720000 440330000 2653700 2196800 1572500 16952 337 16427 315251;315252;315253;315254;315255;315256;315257;315258;315259;315260;315261;315262;315263;315264;315265;315266;315267;315268;315269 192879;192880;192881;192882;192883;192884;192885;192886;192887;192888;192889;192890;192891;192892;192893 192880 12 QLYQHMAK Unmodified 1017.5066 0.5065855 814 P0ADW3 yhcB Inner membrane protein YhcB yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 11.244 12.124 2 0.00084992 3005 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 120.52 120.52 149820000 0 0 0 0 0 0 16747000 17489000 20165000 0 0 0 32703000 26509000 25575000 0 0 0 5780900 4851100 0 0 0 0 16953 814 16428 315270;315271;315272;315273;315274;315275;315276;315277 192894;192895;192896 192896 3 QLYTGYEK Unmodified 1000.4866 0.48656157 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 16.192 17.02 2 0.076609 5659 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 54.157 36.772 2772800000 593160000 597530000 576090000 0 0 0 0 181920000 184860000 0 0 0 86190000 77651000 68038000 0 0 0 231400000 0 175990000 0 0 0 16954 657 16429 315278;315279;315280;315281;315282;315283;315284;315285;315286;315287 192897;192898;192899 192899 3 QMADWLIQNIPQTTEK Unmodified 1914.9509 0.9509479 1178 P21363 yciE Protein YciE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 48.78 47.541 2 2.1886E-24 23219 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 277.11 262.3 162340000 58253000 54105000 49978000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16955 1178 16430 315288;315289;315290 192900;192901;192902 192901 3 QMAESGVTLHADAAALAQLQAGPAK Unmodified 2448.2431 0.24310718 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 38.255 36.624 3 1.2998E-06 17659 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 91.583 89.239 96605000 10839000 10967000 11755000 0 0 0 9889700 0 7019500 0 0 0 7194700 7019100 4439400 0 0 0 7911800 8824100 10746000 0 0 0 16956 148 16431 315291;315292;315293;315294;315295;315296;315297;315298;315299;315300;315301 192903;192904;192905 192904 3 QMAVAFAGLK Unmodified 1034.5583 0.55828672 1709 P67080 yggS UPF0001 protein YggS yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 33.705 32.318 2 0.00019411 14806 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 96.253 83.7 33700000 0 1481200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15592000 16627000 0 0 0 0 16957 1709 16432 315302;315303;315304;315305;315306;315307;315308;315309;315310;315311 192906;192907;192908;192909;192910;192911;192912;192913;192914 192913 9 QMAVEIGR Unmodified 902.46439 0.46438634 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 19.76 20.249 1;2 0.00074398 7818 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.01 91.491 2537400000 124870000 128370000 123470000 1404700 1396600 1336600 203970000 224590000 218350000 0 0 0 231620000 239410000 199490000 0 0 0 268910000 289670000 280540000 0 0 0 16958 337 16433 315312;315313;315314;315315;315316;315317;315318;315319;315320;315321;315322;315323;315324;315325;315326;315327;315328;315329;315330;315331;315332;315333;315334;315335;315336;315337;315338 192915;192916;192917;192918;192919;192920;192921 192920 7 QMDTFIDHDR Unmodified 1276.5506 0.55063516 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 19.057 19.593 2;3 1.3333E-05 7016 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 161.79 161.79 659080000 52240000 51358000 48567000 2137400 2384400 1544300 50276000 42674000 43140000 0 0 0 48261000 47817000 46064000 0 0 0 74049000 71482000 72701000 0 2303900 2084300 16959 29 16434 315339;315340;315341;315342;315343;315344;315345;315346;315347;315348;315349;315350;315351;315352;315353;315354;315355;315356;315357;315358;315359;315360;315361;315362;315363;315364;315365;315366;315367 192922;192923;192924;192925;192926;192927;192928;192929;192930;192931;192932;192933;192934;192935;192936;192937;192938;192939 192938 18 QMDTFIDHDRDMTFSYAAVK Unmodified 2390.0671 0.067116647 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 2 2 2 2 2 2 2 1 36.805 35.13 3;4 9.9824E-05 16849 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.094 66.996 643020000 33693000 45986000 41298000 0 0 0 50951000 46210000 55750000 0 0 0 41498000 40002000 42810000 0 0 0 87398000 71815000 84914000 0 0 694700 16960 29 16435 315368;315369;315370;315371;315372;315373;315374;315375;315376;315377;315378;315379;315380;315381;315382;315383;315384;315385;315386;315387;315388;315389;315390;315391 192940;192941;192942;192943;192944;192945;192946;192947;192948;192949;192950;192951 192948 12 QMDVCADVCQQIAGGEK Unmodified 1907.8176 0.81756724 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.424 31.089 2 7.6207E-14 14574 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 164.48 164.06 115450000 17088000 18650000 20010000 0 584110 0 7520900 7430800 0 0 0 0 8646400 6640100 5564400 0 0 0 7429200 8279800 7604400 0 0 0 16961 639 16436 315392;315393;315394;315395;315396;315397;315398;315399;315400;315401;315402;315403 192952;192953;192954 192954 3 QMDVVEQMMPGLK Unmodified 1504.7088 0.70879206 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 44.931 43.662 2 8.8943E-06 21227 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.6 107.83 55060000 11614000 8876800 8133900 0 0 0 0 0 0 0 0 0 3876300 4069000 4523200 0 0 0 3870700 5752200 4344400 0 0 0 16962 1006 16437 315404;315405;315406;315407;315408;315409;315410;315411;315412 192955;192956;192957 192956 1 QMEFTVPGGAPITGFLHMPK Unmodified 2157.0751 0.075102559 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 51.355 50.121 3 0.0011648 24482 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 62.002 57.65 190810000 26386000 31281000 20979000 0 0 0 14837000 15775000 0 0 0 0 11818000 11945000 14182000 0 0 0 13434000 15791000 14383000 0 0 0 16963 88 16438 315413;315414;315415;315416;315417;315418;315419;315420;315421;315422;315423 192958;192959;192960;192961;192962;192963 192961 6 QMEITPAIR Unmodified 1057.559 0.559015 768 P0AD49 raiA Ribosome-associated inhibitor A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.32 25.162 2;3 8.4667E-05 11593 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 140.09 117.96 6958100000 373200000 330420000 312830000 6502600 6418400 6225400 1068800000 1010500000 974980000 14550000 13820000 15357000 513390000 523650000 444730000 9325500 6681000 7347500 438330000 454920000 410170000 5354800 4907700 5787200 16964 768 16439 315424;315425;315426;315427;315428;315429;315430;315431;315432;315433;315434;315435;315436;315437;315438;315439;315440;315441;315442;315443;315444;315445;315446;315447;315448;315449 192964;192965;192966;192967;192968;192969;192970;192971;192972;192973;192974;192975;192976;192977;192978;192979;192980;192981;192982;192983;192984;192985 192968 21 QMEITPAIR Oxidation (M) 1073.5539 0.55392962 768 P0AD49 raiA Ribosome-associated inhibitor A yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 1 1 19.998 20.348 2 0.00036915 8082 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.74 100.76 193310000 5768900 7880500 0 0 0 0 29094000 43459000 22343000 0 0 0 11068000 7963000 6604700 11274000 9830500 8167700 10556000 10366000 8938800 0 0 0 16965 768 16439 315450;315451;315452;315453;315454;315455;315456;315457;315458;315459;315460;315461;315462;315463;315464 192986;192987;192988;192989;192990;192991;192992;192993;192994;192995;192996;192997;192998 192988 382 12 QMGNSEVGHVNLGAGR Unmodified 1624.774 0.77398659 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 17.426 17.968 2;3 1.5339E-49 6615 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 282.89 274.37 1962400000 76456000 65227000 71341000 1376800 0 0 285330000 247370000 259660000 1477200 1049600 0 166940000 172200000 168810000 815780 482680 661520 156370000 144800000 141100000 0 0 946300 16966 1487 16440 315465;315466;315467;315468;315469;315470;315471;315472;315473;315474;315475;315476;315477;315478;315479;315480;315481;315482;315483;315484;315485;315486;315487;315488;315489;315490;315491;315492;315493;315494;315495 192999;193000;193001;193002;193003;193004;193005;193006;193007;193008;193009;193010;193011;193012;193013;193014;193015;193016;193017;193018;193019;193020 193003 22 QMGSEEQEAK Unmodified 1135.4816 0.48155254 1342 P30178 ybiC Uncharacterized oxidoreductase YbiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.411 11.204 2 0.00074153 2559 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.819 87.843 129570000 22315000 21186000 20272000 0 0 0 12109000 10223000 13784000 0 0 0 0 6910000 8584600 0 0 0 7891900 0 6295700 0 0 0 16967 1342 16441 315496;315497;315498;315499;315500;315501;315502;315503;315504;315505 193021;193022;193023;193024 193024 4 QMIMVLAPK Unmodified 1029.5715 0.57149394 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.608 33.114 2 0.012998 15818 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 65.038 49.667 890850000 165370000 163780000 129510000 0 2280400 4179000 36278000 34141000 33263000 7456900 9698100 10133000 45967000 42522000 40357000 6647200 4588500 5916500 42833000 49899000 41491000 3579100 6340200 4620800 16968 298 16442 315506;315507;315508;315509;315510;315511;315512;315513;315514;315515;315516;315517;315518;315519;315520;315521;315522;315523;315524;315525;315526;315527;315528 193025;193026;193027;193028;193029;193030;193031;193032;193033;193034;193035;193036;193037;193038;193039;193040 193033 16 QMLGEEMK Unmodified 964.43579 0.43578832 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.488 18.18 2 0.00056544 6631 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.57 105.6 2540400000 571090000 636760000 477670000 0 0 405810 146580000 167760000 174080000 0 0 0 63779000 51131000 48677000 0 0 0 62524000 71157000 68744000 0 0 0 16969 195 16443 315529;315530;315531;315532;315533;315534;315535;315536;315537;315538;315539;315540;315541 193041;193042;193043;193044;193045;193046;193047;193048;193049;193050;193051;193052 193047 12 QMLGEEMK Oxidation (M) 980.4307 0.43070295 195 P08997 aceB Malate synthase A yes yes 0 1 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 13.029 13.773 2 0.14189 3991 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 46.813 39.62 66077000 16376000 13801000 13690000 0 0 0 7356300 6797000 6023700 0 0 0 0 0 0 0 0 0 2033700 0 0 0 0 0 16970 195 16443 315542;315543;315544;315545;315546;315547;315548 193053 193053 1 QMLMSWVER Unmodified 1178.5576 0.55763479 305 P0A731 mgsA Methylglyoxal synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.848 38.17 2 6.5335E-06 18943 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 171.53 163.31 816710000 77981000 73941000 70870000 547580 0 582000 56330000 60528000 60963000 0 0 0 68406000 60993000 55220000 0 0 0 72620000 79935000 77798000 0 0 0 16971 305 16444 315549;315550;315551;315552;315553;315554;315555;315556;315557;315558;315559;315560;315561;315562 193054;193055;193056;193057;193058;193059;193060;193061;193062 193055 9 QMLNKPPLPFTK Unmodified 1412.785 0.78499219 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 29.831 28.481 2;3 0.0055399 13146 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.813 94.558 4569700000 55185000 0 0 1818100 2079400 2628400 336920000 358210000 352980000 0 0 0 329730000 365340000 351770000 0 0 1638900 807940000 832200000 769540000 0 0 1684400 16972 993 16445 315563;315564;315565;315566;315567;315568;315569;315570;315571;315572;315573;315574;315575;315576;315577;315578 193063;193064;193065;193066;193067;193068;193069;193070;193071;193072 193069 10 QMLNNAQR Unmodified 973.47635 0.47634801 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.595 12.198 2 0.00017408 2675 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 154.35 148.87 1929200000 118040000 0 141730000 16371000 20993000 16922000 246560000 236620000 226020000 19884000 24117000 25099000 161610000 118750000 153050000 2522300 3335600 4178300 135730000 127530000 117220000 4583400 4172600 4199400 16973 1045 16446 315579;315580;315581;315582;315583;315584;315585;315586;315587;315588;315589;315590;315591;315592;315593;315594;315595;315596;315597;315598;315599;315600;315601;315602 193073;193074;193075;193076;193077;193078;193079;193080;193081;193082;193083 193073 10 QMLNNAQR Oxidation (M) 989.47126 0.47126263 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 8.4801 9.3299 2 0.01808 1319 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 72.234 60.865 72033000 4876700 0 613560 0 1058500 0 22727000 17977000 16099000 0 0 0 0 628760 7056700 0 0 0 0 0 995850 0 0 0 16974 1045 16446 315603;315604;315605;315606;315607;315608;315609;315610;315611;315612;315613;315614 193084;193085 193084 465 2 QMLQEMGR Unmodified 991.45792 0.45792075 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.405 18.723 2 3.7226E-05 5448 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 173.59 167.14 1027000000 47754000 57231000 45633000 0 0 0 40605000 45947000 39217000 7662200 6720800 6303100 46488000 43449000 38809000 137030000 117370000 137140000 62512000 59451000 67966000 6093000 6044900 7523300 16975 36 16447 315615;315616;315617;315618;315619;315620;315621;315622;315623;315624;315625;315626;315627;315628;315629;315630;315631;315632;315633;315634;315635 193086;193087;193088;193089;193090;193091;193092;193093;193094;193095;193096;193097;193098;193099;193100 193086 15 QMLQEMGREPTPEELAER Oxidation (M) 2158.9987 0.99870273 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching 9 8 7 1 26.613 26.576 3 6.1648E-10 10151 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 125.64 120.83 498680000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 200710000 135850000 160020000 2098300 0 0 0 0 0 16976 36 16448 315636;315637;315638;315639;315640;315641;315642;315643;315644;315645;315646;315647;315648;315649;315650;315651;315652;315653;315654;315655;315656;315657;315658;315659;315660 193101;193102;193103;193104;193105;193106;193107;193108;193109;193110;193111;193112;193113;193114;193115;193116;193117;193118;193119;193120;193121;193122;193123;193124;193125 193109 24;25 24 QMLQEMGREPTPEELAER Unmodified 2143.0038 0.003788109 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 1 1 1 1 1 2 2 1 2 2 2 2 2 2 1 1 30.678 29.438 2;3 1.097E-36 10111 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 243.3 242.87 8252000000 39862000 38008000 38527000 3226400 2774000 3281400 35667000 28102000 28424000 9885800 13310000 12986000 49701000 33958000 37566000 2932100000 2280700000 2438900000 58426000 65033000 74421000 14483000 12719000 0 16977 36 16448 315661;315662;315663;315664;315665;315666;315667;315668;315669;315670;315671;315672;315673;315674;315675;315676;315677;315678;315679;315680;315681;315682;315683;315684;315685;315686;315687;315688;315689;315690;315691;315692;315693;315694 193126;193127;193128;193129;193130;193131;193132;193133;193134;193135;193136;193137;193138;193139;193140;193141;193142;193143;193144;193145;193146;193147;193148;193149 193128 24 QMLQEMGREPTPEELAER 2 Oxidation (M) 2174.9936 0.99361735 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 2 1 By MS/MS By MS/MS By MS/MS 1 1 1 29.519 29.541 3 1.4125E-06 9671 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 92.264 84.272 18032000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7145600 5278200 5608400 0 0 0 0 0 0 16978 36 16448 315695;315696;315697 193150;193151;193152 193152 24;25 3 QMLYTGYHYNDGPSAVR Unmodified 1970.8945 0.89449566 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.458 25.141 3 0.0034782 8989 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 55.864 45.668 269400000 24049000 20353000 19715000 3874800 3159600 3521100 24629000 16039000 18877000 7545400 5677200 7595200 0 12740000 12224000 0 0 0 25689000 21122000 21343000 5933700 6984100 8332600 16979 1909 16449 315698;315699;315700;315701;315702;315703;315704;315705;315706;315707;315708;315709;315710;315711;315712;315713;315714;315715;315716;315717 193153;193154;193155;193156;193157;193158;193159;193160 193156 8 QMNDEIHQNLVGVSNHR Unmodified 1989.9439 0.94390546 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 2 2 2 1 1 1 2 2 1 1 2 2 2 1 2 1 19.04 19.437 3;4 4.9977E-09 7392 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 122.81 119.57 982670000 77311000 74505000 30662000 1878000 0 1754200 103110000 100690000 96813000 3610500 3187500 2368800 103740000 94144000 34289000 0 2293000 0 87279000 83897000 75696000 1920700 2066300 1459700 16980 540 16450 315718;315719;315720;315721;315722;315723;315724;315725;315726;315727;315728;315729;315730;315731;315732;315733;315734;315735;315736;315737;315738;315739;315740;315741;315742;315743;315744;315745;315746;315747;315748;315749 193161;193162;193163;193164;193165;193166;193167;193168;193169;193170;193171;193172;193173;193174;193175;193176;193177;193178;193179 193168 19 QMPEIVER Unmodified 1000.5012 0.50116577 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.123 21.936 2 0.0012043 9071 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 110.81 96.65 897490000 77960000 66132000 56845000 3350800 3112600 2294800 54844000 60817000 61154000 21372000 16998000 19868000 53619000 52595000 54094000 7210300 4772300 4296500 83304000 87625000 79161000 10853000 8263100 6946600 16981 883 16451 315750;315751;315752;315753;315754;315755;315756;315757;315758;315759;315760;315761;315762;315763;315764;315765;315766;315767;315768;315769;315770;315771;315772;315773 193180;193181;193182;193183;193184;193185;193186;193187;193188;193189;193190;193191;193192;193193;193194;193195;193196 193191 15 QMQFFGAR Unmodified 983.46472 0.46472069 212;1559 P09373;P42632 pflB;tdcE Formate acetyltransferase 1;PFL-like enzyme TdcE no no 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.783 27.481 2 0.00055615 12756 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.96 132.96 8409000000 352720000 278500000 252780000 4454200 4120700 5384800 1139900000 1265700000 1097700000 15161000 12347000 12293000 692630000 687690000 754610000 7619300 4859400 5973400 612230000 600490000 582050000 6896800 6201300 6754000 16982 212;1559 16452 315774;315775;315776;315777;315778;315779;315780;315781;315782;315783;315784;315785;315786;315787;315788;315789;315790;315791;315792;315793;315794;315795;315796;315797 193197;193198;193199;193200;193201;193202;193203;193204;193205;193206;193207;193208;193209;193210;193211;193212 193205 16 QMQFFGAR Oxidation (M) 999.45964 0.45963531 212;1559 P09373;P42632 pflB;tdcE Formate acetyltransferase 1;PFL-like enzyme TdcE no no 0 1 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 3 3 3 1 3 3 3 3 3 2 22.81 22.684 2 0.0047548 12137 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 89.673 85.739 326860000 8927700 4267300 4140800 0 0 0 53005000 55735000 51085000 485530 0 0 32819000 26362000 28809000 0 0 0 22548000 24775000 13904000 0 0 0 16983 212;1559 16452 315798;315799;315800;315801;315802;315803;315804;315805;315806;315807;315808;315809;315810;315811;315812;315813;315814;315815;315816;315817;315818;315819;315820;315821;315822;315823;315824;315825;315826;315827;315828 193213;193214;193215;193216;193217 193217 77 3 QMQMNAQAEK Unmodified 1177.522 0.52197757 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 0 By MS/MS By MS/MS 1 1 12.498 12.647 2 9.9932E-05 2961 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 105.4 96.484 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16984 690 16453 315829;315830 193218;193219 193218 2 QMQVGGK Unmodified 746.37451 0.3745087 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.848 11.35 2 0.017717 2248 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 79.454 79.454 894440000 0 0 37773000 0 0 0 30358000 25491000 32262000 44330000 37847000 39196000 31673000 26617000 29681000 109590000 87143000 95745000 40038000 42782000 40165000 47209000 52719000 43821000 16985 384 16454 315831;315832;315833;315834;315835;315836;315837;315838;315839;315840;315841;315842;315843;315844;315845;315846;315847;315848;315849 193220;193221;193222;193223;193224;193225;193226;193227;193228 193220 9 QMQVGGKDPLVPEENDK Oxidation (M) 1898.9044 0.90439164 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 1 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 3 1 1 1 2 20.169 19.954 3 0.0014315 6381 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 62.813 62.484 95379000 0 0 0 0 0 0 0 0 0 0 2610000 8230300 0 0 0 25436000 28157000 14124000 0 0 0 3853700 6119300 6848600 16986 384 16455 315850;315851;315852;315853;315854;315855;315856;315857;315858;315859;315860;315861;315862 193229;193230;193231;193232;193233 193232 170 5 QMQVGGKDPLVPEENDK Unmodified 1882.9095 0.90947702 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 22.276 21.954 2;3 5.6874E-24 6374 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 274.59 273.17 3155800000 99844000 84317000 84563000 0 0 0 0 0 0 162390000 153590000 150090000 82257000 75193000 54958000 518270000 426770000 390870000 118510000 121690000 104730000 186690000 186010000 155080000 16987 384 16455 315863;315864;315865;315866;315867;315868;315869;315870;315871;315872;315873;315874;315875;315876;315877;315878;315879;315880;315881;315882;315883;315884;315885;315886;315887;315888;315889;315890;315891;315892;315893;315894;315895;315896;315897;315898;315899 193234;193235;193236;193237;193238;193239;193240;193241;193242;193243;193244;193245;193246;193247;193248;193249;193250;193251;193252;193253;193254;193255;193256;193257;193258;193259;193260;193261;193262;193263;193264;193265;193266;193267 193237 33 QMQVGGKDPLVPEENDKTTVIALR Oxidation (M) 2653.3745 0.37451528 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 1 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 5 5 4 1 6 6 6 1 5 5 5 29.835 28.582 3;4 1.9124E-22 9534 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 175.77 172.43 2331100000 0 0 0 907260 1237500 1073300 0 0 0 213850000 169040000 103350000 0 2510500 0 436000000 320460000 348580000 0 0 4180100 225720000 252220000 252000000 16988 384 16456 315900;315901;315902;315903;315904;315905;315906;315907;315908;315909;315910;315911;315912;315913;315914;315915;315916;315917;315918;315919;315920;315921;315922;315923;315924;315925;315926;315927;315928;315929;315930;315931;315932;315933;315934;315935;315936;315937;315938;315939;315940;315941;315942;315943;315944;315945;315946;315947;315948;315949;315950;315951 193268;193269;193270;193271;193272;193273;193274;193275;193276;193277;193278;193279;193280;193281;193282;193283;193284;193285;193286;193287;193288;193289;193290;193291;193292;193293;193294;193295;193296;193297;193298;193299;193300;193301;193302;193303;193304;193305;193306;193307;193308;193309;193310 193271 170 43 QMQVGGKDPLVPEENDKTTVIALR Unmodified 2637.3796 0.37960066 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 5 4 4 2 2 2 5 3 5 2 2 3 5 5 4 32.434 31.018 2;3;4;5 1.1726E-59 11608 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 293.77 283.13 48239000000 166930000 153680000 134860000 17301000 4286400 13079000 95569000 92612000 88420000 2470400000 2774400000 2852800000 106160000 92580000 84992000 9301200000 9268800000 9010900000 168910000 154510000 177480000 3539600000 4027100000 3442100000 16989 384 16456 315952;315953;315954;315955;315956;315957;315958;315959;315960;315961;315962;315963;315964;315965;315966;315967;315968;315969;315970;315971;315972;315973;315974;315975;315976;315977;315978;315979;315980;315981;315982;315983;315984;315985;315986;315987;315988;315989;315990;315991;315992;315993;315994;315995;315996;315997;315998;315999;316000;316001;316002;316003;316004;316005;316006;316007;316008;316009;316010;316011;316012;316013;316014;316015;316016;316017;316018;316019;316020;316021 193311;193312;193313;193314;193315;193316;193317;193318;193319;193320;193321;193322;193323;193324;193325;193326;193327;193328;193329;193330;193331;193332;193333;193334;193335;193336;193337;193338;193339;193340;193341;193342;193343;193344;193345;193346;193347;193348;193349;193350;193351;193352;193353;193354;193355;193356;193357;193358;193359;193360;193361;193362;193363;193364;193365;193366;193367;193368;193369;193370;193371;193372;193373;193374;193375;193376;193377;193378;193379;193380;193381;193382;193383;193384;193385;193386;193387;193388;193389;193390 193371 80 QMSLLER Unmodified 875.45349 0.4534873 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 22.905 22.339 2 0.0071597 9518 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.467 74.905 341100000 102510000 118850000 106340000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13397000 0 0 0 16990 26 16457 316022;316023;316024;316025 193391;193392 193392 2 QMTQLAQLGLLSR Unmodified 1457.8024 0.80243317 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 44.02 42.589 2 9.1375E-05 19931 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 106.01 100.95 199630000 41633000 41359000 38567000 0 0 0 35721000 0 0 0 0 0 0 15604000 16222000 0 0 0 0 0 10519000 0 0 0 16991 427 16458 316026;316027;316028;316029;316030;316031;316032 193393;193394 193394 0 QMVMIGYSDSAK Unmodified 1328.6105 0.61045823 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.871 27.615 2 4.3116E-08 12989 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.75 154.61 435220000 66699000 60703000 58717000 0 0 0 34651000 38484000 33254000 0 0 0 18931000 21005000 22098000 0 0 0 28583000 27530000 24568000 0 0 0 16992 43 16459 316033;316034;316035;316036;316037;316038;316039;316040;316041;316042;316043;316044 193395;193396;193397;193398;193399;193400;193401;193402;193403;193404 193397 10 QNDQIDVLLAK Unmodified 1255.6772 0.67721588 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.356 33.736 2 1.221E-05 16015 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 144.77 101.49 1954700000 544650000 471250000 441040000 0 0 0 50163000 51932000 57860000 1982800 0 2176400 43794000 40713000 36052000 0 0 0 66987000 72364000 73789000 0 0 0 16993 852 16460 316045;316046;316047;316048;316049;316050;316051;316052;316053;316054;316055;316056;316057;316058 193405;193406;193407;193408;193409;193410;193411 193408 5 QNEENLLPK Unmodified 1083.556 0.55603811 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.285 20.686 2 0.034802 7960 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 58.596 49.008 159210000 17592000 19846000 16658000 0 0 0 19730000 17969000 19432000 0 0 0 11226000 9854000 9008200 0 0 0 6639700 5558200 5694400 0 0 0 16994 427 16461 316059;316060;316061;316062;316063;316064;316065;316066;316067;316068;316069;316070 193412;193413;193414;193415 193412 4 QNEWGTLLR Unmodified 1115.5724 0.57235688 813 P0ADV7 mlaC Probable phospholipid-binding protein MlaC yes yes 0 0 0 By MS/MS By MS/MS 1 1 34.864 33.368 2 3.4327E-12 15161 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 173.28 154.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16995 813 16462 316071;316072 193416;193417 193417 2 QNGDDFVLTPK Unmodified 1232.6037 0.60371659 1637 P61316 lolA Outer-membrane lipoprotein carrier protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.089 26.934 2 0.0015493 11852 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 78.655 68.968 185980000 20775000 13776000 10700000 0 0 0 14117000 14853000 12316000 0 0 0 16910000 13808000 13161000 0 0 0 16618000 20243000 18707000 0 0 0 16996 1637 16463 316073;316074;316075;316076;316077;316078;316079;316080;316081;316082;316083;316084 193418;193419;193420;193421;193422;193423 193421 5 QNGGNVTR Unmodified 844.41513 0.41512796 707 P0AC81 gloA Lactoylglutathione lyase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 1 1 2 2 1 1 1 5.2358 6.0672 2 0.013575 1477 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 73.248 57.809 168130000 20791000 18930000 14187000 0 0 0 17223000 15973000 20587000 0 0 0 12264000 0 9009100 0 0 0 10819000 14106000 14241000 0 0 0 16997 707 16464 316085;316086;316087;316088;316089;316090;316091;316092;316093;316094;316095;316096;316097;316098;316099;316100 193424;193425;193426 193425 3 QNGISYSK Unmodified 895.43995 0.43994572 354 P0A7L3 rplT 50S ribosomal protein L20 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.727 12.512 2 0.0030318 2544 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 95.531 71.558 292620000 29958000 22192000 22283000 9738700 9678500 9580000 8923700 10096000 8420100 0 0 0 13477000 12667000 9833000 0 0 0 26159000 24736000 21953000 20635000 16743000 15546000 16998 354 16465 316101;316102;316103;316104;316105;316106;316107;316108;316109;316110;316111;316112;316113;316114;316115;316116;316117;316118 193427;193428;193429 193427 3 QNGMFSFSGLTK Unmodified 1315.6231 0.62307182 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 40.481 38.764 2 1.715E-06 17992 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 104.43 92.198 354730000 44990000 48460000 40000000 385460 392090 0 35530000 27825000 33591000 0 0 0 24813000 0 0 0 0 0 35825000 30481000 32438000 0 0 0 16999 31 16466 316119;316120;316121;316122;316123;316124;316125;316126;316127;316128;316129;316130;316131 193430;193431;193432;193433;193434;193435;193436;193437;193438;193439;193440 193440 11 QNHLGSVQEEGNLR Unmodified 1579.7703 0.77028142 1671 P64461 lsrG Autoinducer 2-degrading protein LsrG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 14 14.799 3 0.019042 4766 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 49.243 44.852 61355000 28630000 17313000 15412000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17000 1671 16467 316132;316133;316134 193441;193442;193443 193441 0 QNILPTR Unmodified 840.48175 0.48175096 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.983 18.456 2 0.0094973 6773 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 87.754 52.554 150510000 13165000 7432100 9042200 0 0 0 15952000 0 15698000 1336800 0 0 8984800 7462200 9047700 2793200 2334000 2343000 17744000 22283000 14893000 0 0 0 17001 248 16468 316135;316136;316137;316138;316139;316140;316141;316142;316143;316144;316145;316146;316147;316148;316149 193444 193444 1 QNLAQQER Unmodified 985.49411 0.49410656 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.693 11.543 2 0.00010014 2723 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 161.11 154.09 4231600000 237060000 240870000 224590000 1139600 0 1059100 457260000 407930000 428490000 0 0 0 374490000 344480000 301870000 0 0 0 402210000 397460000 412680000 0 0 0 17002 1299 16469 316150;316151;316152;316153;316154;316155;316156;316157;316158;316159;316160;316161;316162;316163 193445;193446;193447;193448;193449;193450;193451;193452;193453;193454;193455;193456 193446 12 QNLAQVER Unmodified 956.50394 0.50394297 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.824 13.664 2 2.302E-05 4053 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 176.41 107.32 1139000000 226600000 211920000 183880000 0 0 0 121640000 120280000 108610000 0 0 0 26341000 18095000 22202000 0 0 0 33821000 32544000 33106000 0 0 0 17003 1423 16470 316164;316165;316166;316167;316168;316169;316170;316171;316172;316173;316174;316175 193457;193458;193459;193460;193461;193462;193463;193464;193465 193458 9 QNLATFCQTWDDENVHK Unmodified 2104.9273 0.92725235 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 2 31.442 29.92 2;3 3.4334E-50 14036 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 340.14 340.14 16115000000 1884300000 1588800000 1613500000 0 0 3383900 3213700000 3336700000 3349700000 34136000 20860000 18047000 157970000 168860000 147420000 0 0 0 197720000 189960000 189880000 0 0 0 17004 1755;1756 16471 316176;316177;316178;316179;316180;316181;316182;316183;316184;316185;316186;316187;316188;316189;316190;316191;316192;316193;316194;316195;316196;316197;316198;316199;316200;316201;316202;316203;316204;316205 193466;193467;193468;193469;193470;193471;193472;193473;193474;193475;193476;193477;193478;193479;193480;193481;193482;193483;193484;193485;193486;193487;193488;193489;193490;193491;193492;193493;193494 193485 29 QNLEASGVR Unmodified 972.49886 0.49885759 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.434 13.151 2 0.001165 3806 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 91.516 76.852 133520000 13311000 12724000 17101000 0 0 0 0 0 0 0 0 0 8535000 10026000 12788000 0 0 0 16469000 15440000 17728000 3266500 3139200 2987000 17005 486 16472 316206;316207;316208;316209;316210;316211;316212;316213;316214;316215;316216;316217 193495;193496;193497 193497 2 QNLGIYR Unmodified 862.4661 0.4661009 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 18.361 18.709 2 0.0052872 5739 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 100.27 68.969 232360000 13334000 15608000 12048000 3481700 0 3677900 35099000 36210000 32652000 5905400 3562300 4757000 4710100 0 0 0 0 0 16232000 16172000 18129000 3827300 3749500 3207800 17006 582 16473 316218;316219;316220;316221;316222;316223;316224;316225;316226;316227;316228;316229;316230;316231;316232;316233;316234;316235;316236 193498;193499;193500;193501;193502;193503 193500 6 QNLHVHVEASGEQYR Unmodified 1765.8496 0.84959437 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 13.317 14.179 3 0.14287 4344 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 30.575 20.654 80523000 0 0 0 0 0 0 22325000 16462000 15922000 0 0 0 4604200 0 4589900 0 0 0 6461500 0 10158000 0 0 0 17007 145 16474 316237;316238;316239;316240;316241;316242;316243 193504 193504 0 QNLISVNSPIAR Unmodified 1310.7306 0.73064844 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 31.776 30.423 2;3 2.5125E-08 13672 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 193.82 181.3 2524400000 166320000 154750000 148120000 0 0 0 207380000 191960000 215210000 0 0 0 211490000 196420000 210020000 0 0 0 282270000 278370000 262080000 0 0 0 17008 288 16475 316244;316245;316246;316247;316248;316249;316250;316251;316252;316253;316254;316255;316256;316257;316258;316259;316260;316261;316262;316263;316264;316265;316266 193505;193506;193507;193508;193509;193510;193511;193512;193513;193514;193515;193516;193517;193518 193517 13 QNLLDIESLK Unmodified 1171.6449 0.64485312 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.757 38.932 2 7.121E-05 18927 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 133.13 90.051 348890000 19318000 20867000 0 0 1144700 1225800 26544000 30483000 29115000 3191700 0 0 30972000 28205000 25300000 0 0 0 41715000 44984000 38009000 2683100 2404000 2727900 17009 1854 16476 316267;316268;316269;316270;316271;316272;316273;316274;316275;316276;316277;316278;316279;316280;316281;316282;316283 193519;193520;193521;193522;193523;193524;193525;193526;193527;193528;193529 193526 11 QNLLDIESLKVDDLDIHAYR Unmodified 2369.2227 0.22268931 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.98 45.646 4 1.6642E-07 18576 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 107.89 104.36 220800000 0 0 0 10703000 12381000 13065000 10893000 0 6339500 29721000 25062000 25948000 0 0 0 8666000 9968100 11533000 0 0 0 19544000 19148000 17832000 17010 1854 16477 316284;316285;316286;316287;316288;316289;316290;316291;316292;316293;316294;316295;316296;316297 193530;193531;193532;193533;193534;193535;193536;193537;193538;193539;193540;193541 193533 12 QNLLGKR Unmodified 827.49774 0.49773538 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.925 12.069 2 0.0020078 2556 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 127.1 100.13 970830000 0 0 0 0 0 0 0 0 0 68795000 62920000 65463000 0 0 0 227740000 127480000 147850000 0 0 0 96222000 87388000 86976000 17011 458 16478 316298;316299;316300;316301;316302;316303;316304;316305;316306 193542;193543;193544;193545;193546;193547;193548;193549;193550 193543 9 QNLNIDSVSEMR Unmodified 1404.6667 0.66672755 931 P0AFE4 nuoK NADH-quinone oxidoreductase subunit K yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 30.365 28.726 2 3.4075E-08 13691 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 195.36 185.7 244350000 0 0 0 0 0 0 22477000 23555000 23363000 1766100 1741400 1646100 20763000 21926000 19676000 0 0 0 36477000 37772000 31786000 0 0 1399900 17012 931 16479 316307;316308;316309;316310;316311;316312;316313;316314;316315;316316;316317;316318;316319 193551;193552;193553;193554;193555;193556;193557;193558;193559 193552 9 QNLPGAEEGDGFFYAK Unmodified 1741.7948 0.79476484 1449 P36929 rsmB Ribosomal RNA small subunit methyltransferase B yes yes 0 0 0 By MS/MS 1 37.992 36.538 2 0.068283 17787 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 49.934 45.04 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17013 1449 16480 316320 193560 193560 1 QNLTAPATMIDWR Unmodified 1515.7504 0.7503976 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.329 40.63 2 0.0005491 19709 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.898 92.365 276770000 38166000 38200000 36049000 0 0 0 27780000 26493000 19719000 0 0 0 13557000 13084000 16332000 0 0 0 16203000 14651000 16533000 0 0 0 17014 1100 16481 316321;316322;316323;316324;316325;316326;316327;316328;316329;316330;316331;316332 193561 193561 1 QNLTAPATMIDWRPVVHEMR Unmodified 2364.1831 0.18308988 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 40.306 38.64 3;4 5.1805E-15 19211 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.57 114.58 1183900000 157150000 145480000 142850000 646410 0 0 97380000 85066000 92854000 0 0 0 60680000 70368000 64307000 0 0 0 83958000 96861000 86311000 0 0 0 17015 1100 16482 316333;316334;316335;316336;316337;316338;316339;316340;316341;316342;316343;316344;316345;316346;316347;316348;316349;316350;316351;316352;316353;316354;316355;316356;316357 193562;193563;193564;193565;193566;193567;193568;193569;193570;193571;193572;193573;193574;193575;193576;193577;193578;193579;193580 193563 19 QNNLAYTK Unmodified 950.48214 0.48214489 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.3 12.87 2 0.070106 3637 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 55.531 39.386 2333100000 0 32850000 24491000 0 0 0 300050000 0 287570000 0 33327000 36875000 255480000 240630000 213340000 3262600 1722800 3152800 289090000 283350000 278620000 24566000 24717000 0 17016 994 16483 316358;316359;316360;316361;316362;316363;316364;316365;316366;316367;316368;316369;316370;316371;316372;316373;316374 193581;193582 193581 1 QNPLAVLGVLR Unmodified 1178.7135 0.71354181 1804 P76010 ycgR Flagellar brake protein YcgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 50.271 48.936 2 0.00010936 23790 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.07 107.36 46117000 14229000 14675000 13962000 0 1821900 1429600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17017 1804 16484 316375;316376;316377;316378;316379 193583;193584;193585 193585 3 QNQLEQLAEQYDELK Unmodified 1847.8901 0.89012178 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 46.513 45.152 2;3 6.6501E-27 21901 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 284.28 279.76 406930000 16438000 22906000 14437000 0 0 0 16237000 16189000 15933000 15632000 17713000 15258000 24141000 16767000 15048000 33442000 22965000 28215000 23591000 22923000 16873000 16282000 19045000 16894000 17018 463 16485 316380;316381;316382;316383;316384;316385;316386;316387;316388;316389;316390;316391;316392;316393;316394;316395;316396;316397;316398;316399;316400;316401;316402;316403;316404;316405;316406;316407;316408;316409;316410;316411;316412;316413;316414;316415;316416;316417;316418 193586;193587;193588;193589;193590;193591;193592;193593;193594;193595;193596;193597;193598;193599;193600;193601;193602;193603;193604;193605;193606;193607;193608;193609 193608 23 QNQLEQLAEQYDELKHEFEK Unmodified 2518.1976 0.19759677 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 4 4 3 1 1 1 1 1 1 48.126 47.269 2;3;4 1.0888E-110 17748 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 427.16 416.22 10105000000 166270000 185240000 145150000 0 1913200 0 127160000 120300000 145780000 321230000 357730000 290400000 148880000 127420000 147730000 1601800000 2034100000 2326200000 202590000 214870000 184560000 427810000 421520000 406180000 17019 463 16486 316419;316420;316421;316422;316423;316424;316425;316426;316427;316428;316429;316430;316431;316432;316433;316434;316435;316436;316437;316438;316439;316440;316441;316442;316443;316444;316445;316446;316447;316448 193610;193611;193612;193613;193614;193615;193616;193617;193618;193619;193620;193621;193622;193623;193624;193625;193626;193627;193628;193629;193630;193631;193632;193633;193634 193611 24 QNQLEQLAEQYDELKHEFEKK Unmodified 2646.2926 0.29255979 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 43.458 42.701 4;5 1.1233E-21 15016 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 163.45 162.76 440510000 0 0 0 0 0 0 0 0 0 10984000 10771000 11540000 0 2318000 0 102410000 140570000 161910000 0 0 0 0 0 0 17020 463 16487 316449;316450;316451;316452;316453;316454;316455;316456;316457;316458 193635;193636;193637;193638;193639;193640;193641;193642;193643 193640 9 QNTFFVTNSGVQNR Unmodified 1610.7801 0.78011783 1585 P46130 ybhC Putative acyl-CoA thioester hydrolase YbhC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.386 27.046 2 0.00052785 12440 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 78.342 71.213 33563000 2606400 4407800 4780100 917010 0 566950 0 0 2267700 0 0 2602100 0 1099300 0 0 0 0 0 6228900 5174700 1434100 0 1478400 17021 1585 16488 316459;316460;316461;316462;316463;316464;316465;316466;316467;316468;316469;316470 193644 193644 0 QNVELNK Unmodified 843.44503 0.4450311 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 11.324 12.126 2 0.13862 3286 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 46.835 19.873 63853000 0 0 2808100 0 0 0 11742000 11009000 9928500 0 0 0 0 0 0 0 0 0 12294000 12591000 3480600 0 0 0 17022 1787 16489 316471;316472;316473;316474;316475;316476;316477 193645 193645 1 QNVLLVPQEGVTHNAQGK Unmodified 1931.0225 0.022473362 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.645 23.566 3 2.975E-07 8460 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 107.63 99.14 173080000 11524000 15882000 9017400 2020200 2554000 3768100 30618000 24791000 25364000 15611000 13614000 12921000 0 2576800 2815100 0 0 0 0 0 0 0 0 0 17023 1477 16490 316478;316479;316480;316481;316482;316483;316484;316485;316486;316487;316488;316489;316490;316491 193646;193647;193648;193649;193650 193648 5 QNVQGVDVR Unmodified 1013.5254 0.52540669 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.528 14.405 2 9.3151E-05 4456 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.9 111.97 3085800000 362430000 307860000 239720000 517970 0 0 330780000 317220000 312150000 0 0 0 211490000 191370000 187320000 0 0 0 213160000 208190000 203550000 0 0 0 17024 874 16491 316492;316493;316494;316495;316496;316497;316498;316499;316500;316501;316502;316503;316504 193651;193652;193653;193654;193655;193656;193657;193658;193659;193660;193661 193653 11 QNVSSVIIDLR Unmodified 1242.6932 0.6932003 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.879 36.177 2 7.0054E-05 16704 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 125.57 81.252 339260000 30419000 25503000 26935000 734370 1116900 869270 24891000 25419000 21668000 0 0 0 23592000 21137000 24825000 0 0 0 36711000 37006000 37280000 0 1154900 0 17025 1221 16492 316505;316506;316507;316508;316509;316510;316511;316512;316513;316514;316515;316516;316517;316518;316519;316520 193662;193663;193664;193665;193666;193667;193668;193669;193670;193671;193672 193672 11 QNWLDVIR Unmodified 1042.556 0.55597854 1538 P39407 yjjU Uncharacterized protein YjjU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.26 41.526 2 0.0010836 20178 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.82 107.46 86509000 7300100 8131500 7629100 561870 588380 440010 14249000 11761000 10315000 2843900 4723000 3868200 0 1385200 2411700 0 0 0 1960100 4230900 4110500 0 0 0 17026 1538 16493 316521;316522;316523;316524;316525;316526;316527;316528;316529;316530;316531;316532;316533;316534;316535;316536;316537 193673;193674;193675 193674 3 QPALGYLN Unmodified 874.45487 0.45486751 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 34.876 33.185 1;2 0.0074086 15664 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.457 93.723 1091400000 171210000 159600000 142430000 4141700 3629700 3326600 36731000 46855000 42728000 11125000 9813500 10447000 57777000 54370000 49317000 0 0 0 93204000 88839000 88778000 4918200 5365600 6842200 17027 67 16494 316538;316539;316540;316541;316542;316543;316544;316545;316546;316547;316548;316549;316550;316551;316552;316553;316554;316555;316556;316557;316558;316559;316560;316561;316562;316563;316564;316565;316566;316567;316568;316569;316570;316571;316572;316573;316574;316575;316576;316577;316578;316579 193676;193677;193678;193679;193680;193681;193682;193683 193683 6 QPANATVTAIEMAVEK Unmodified 1671.8502 0.85017123 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 42.15 40.602 2;3 3.4255E-08 19909 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.93 107.56 297990000 66808000 70254000 55611000 0 0 0 0 0 0 0 0 0 6780700 7087100 8025900 0 0 0 26988000 27439000 28995000 0 0 0 17028 65 16495 316580;316581;316582;316583;316584;316585;316586;316587;316588;316589;316590;316591;316592;316593;316594;316595;316596;316597 193684;193685;193686;193687;193688;193689;193690;193691;193692 193684 8 QPDAMTHPDGMQIK Unmodified 1567.7123 0.71229754 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.698 19.12 3 0.057287 7075 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 36.392 31.591 248040000 41450000 38893000 41792000 1337600 0 0 13855000 16341000 14657000 1946800 0 1888600 10276000 6927900 8838900 0 0 0 18222000 15421000 15107000 1083400 0 0 17029 734 16496 316598;316599;316600;316601;316602;316603;316604;316605;316606;316607;316608;316609;316610;316611;316612;316613 193693;193694 193694 2 QPDGSWVNYNYDWMFKPGAMK Unmodified 2533.1195 0.11948657 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.895 48.489 3 0.004721 22749 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 47.32 47.266 208630000 10862000 10825000 9382000 0 0 0 21645000 18575000 20667000 0 0 0 19967000 24516000 23371000 0 0 0 16175000 16580000 16066000 0 0 0 17030 213 16497 316614;316615;316616;316617;316618;316619;316620;316621;316622;316623;316624;316625 193695;193696;193697;193698;193699 193698 5 QPDLIPLLR Unmodified 1063.639 0.63897988 1723 P68699 atpE ATP synthase subunit c yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.13 44.489 2 0.0053135 21632 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.794 68.011 983380000 26169000 31340000 26074000 3225300 2099800 1976800 70566000 76222000 67224000 16478000 18487000 15787000 88578000 81321000 79472000 0 0 0 104290000 122030000 102540000 15555000 17168000 16780000 17031 1723 16498 316626;316627;316628;316629;316630;316631;316632;316633;316634;316635;316636;316637;316638;316639;316640;316641;316642;316643;316644;316645;316646 193700;193701;193702;193703;193704;193705;193706;193707;193708;193709;193710;193711;193712;193713;193714;193715;193716;193717;193718;193719;193720;193721;193722;193723;193724;193725;193726;193727;193728 193716 29 QPEEPWFQTEWK Unmodified 1603.7307 0.73070802 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS 1 1 43.145 41.789 2 2.1335E-05 20204 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.6 114.87 81133000 46898000 0 34235000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17032 71 16499 316647;316648 193729;193730 193730 2 QPEFTQIDVETSFMTAPQVR Unmodified 2323.1154 0.11544705 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 50.378 49.015 2;3 1.4784E-37 23872 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 300.61 280.77 702190000 33368000 32347000 28988000 0 0 0 65664000 66632000 56712000 0 0 0 66903000 61823000 67234000 8320600 0 0 70085000 71810000 67936000 1545000 2822200 0 17033 1189 16500 316649;316650;316651;316652;316653;316654;316655;316656;316657;316658;316659;316660;316661;316662;316663;316664;316665;316666;316667;316668;316669;316670;316671;316672;316673;316674;316675 193731;193732;193733;193734;193735;193736;193737;193738;193739;193740;193741;193742;193743;193744;193745;193746;193747;193748 193734 12 QPEVKEEKPEFDPILLR Unmodified 2066.1048 0.10480601 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 30.204 30.226 4 0.0072319 9958 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 44.601 34.32 15641000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6059800 4732900 4848600 0 0 0 0 0 0 17034 383 16501 316676;316677;316678 193749;193750;193751 193751 3 QPGFPEHVLPEYLEK Unmodified 1781.8988 0.89883598 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.591 35.699 3 0.0085264 16431 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 34.485 33.775 326980000 25539000 30464000 0 0 0 0 19762000 27312000 20969000 1226700 1146400 1242500 25755000 26961000 29579000 0 0 0 36564000 33069000 44042000 0 1920800 1425100 17035 1812 16502 316679;316680;316681;316682;316683;316684;316685;316686;316687;316688;316689;316690;316691;316692;316693;316694 193752;193753;193754;193755;193756;193757;193758;193759;193760 193760 9 QPGLDFQSAK Unmodified 1089.5455 0.54547343 1001 P0AGA2 secY Protein translocase subunit SecY yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 22.263 22.316 2 0.0018366 8684 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 95.502 82.974 129340000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20594000 966040 0 0 37245000 36387000 34148000 0 0 0 17036 1001 16503 316695;316696;316697;316698;316699 193761;193762 193762 2 QPLELVDMVEK Unmodified 1299.6744 0.67443869 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.12 40.237 2 2.993E-05 19926 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.23 132.78 4494200000 638400000 647350000 630030000 7787400 8542500 7612200 157690000 159960000 152550000 28074000 29736000 29679000 273490000 210040000 244650000 0 0 0 412670000 407710000 400570000 15961000 16938000 14709000 17037 378 16504 316700;316701;316702;316703;316704;316705;316706;316707;316708;316709;316710;316711;316712;316713;316714;316715;316716;316717;316718;316719;316720 193763;193764;193765;193766;193767;193768;193769;193770;193771;193772;193773;193774;193775;193776;193777;193778;193779;193780;193781 193768 19 QPLELVDMVEKLDLYITVK Unmodified 2245.228 0.22795761 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 55.346 55.401 3 8.6944E-05 20805 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 72.421 56.656 36944000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9594800 13673000 13676000 0 0 0 0 0 0 17038 378 16505 316721;316722;316723 193782 193782 1 QPLEPMDITR Unmodified 1198.6016 0.6016081 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 29.514 28.3 2 0.00048495 13046 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.02 91.553 846370000 272070000 289740000 283600000 378930 582760 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17039 1762 16506 316724;316725;316726;316727;316728 193783;193784;193785 193784 3 QPLEVVR Unmodified 839.4865 0.48650199 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.488 18.063 2 0.0033765 6175 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 108.24 57.201 2469100000 127630000 133060000 148670000 0 0 0 269010000 277760000 227020000 0 634220 690810 182730000 175850000 170020000 0 0 0 236400000 257690000 261920000 0 0 0 17040 92 16507 316729;316730;316731;316732;316733;316734;316735;316736;316737;316738;316739;316740;316741;316742 193786;193787;193788;193789;193790;193791;193792;193793;193794;193795 193795 10 QPLHIPFAIELYDNEGK Unmodified 1983.0102 0.010177341 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.804 46.39 2;3 6.7757E-14 22651 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.24 158.87 1057800000 123310000 123170000 123020000 0 0 0 104780000 81995000 78124000 0 0 0 62425000 58094000 52211000 0 0 0 89613000 84966000 76080000 0 0 0 17041 94 16508 316743;316744;316745;316746;316747;316748;316749;316750;316751;316752;316753;316754;316755;316756;316757;316758;316759;316760;316761;316762;316763;316764;316765;316766 193796;193797;193798;193799;193800;193801;193802;193803;193804;193805;193806;193807;193808;193809;193810;193811;193812;193813;193814 193802 18 QPLPGAFAVAPYYEMALATDHPQR Unmodified 2642.2951 0.29514275 1965 Q46919 yqcC Uncharacterized protein YqcC yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.224 49.968 3 3.2882E-10 24334 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 123.14 119.61 197310000 17720000 15005000 16168000 0 0 0 11002000 11609000 10749000 0 0 0 17222000 13777000 15335000 0 0 0 22516000 22996000 23208000 0 0 0 17042 1965 16509 316767;316768;316769;316770;316771;316772;316773;316774;316775;316776;316777;316778 193815;193816;193817;193818;193819;193820;193821;193822;193823 193818 8 QPLQNVSMPFLR Unmodified 1428.7548 0.7547547 1082 P13001 bioH Pimeloyl-[acyl-carrier protein] methyl ester esterase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 44.399 42.753 2 9.3453E-05 20861 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 111.65 101.96 56381000 0 0 0 0 0 0 8981000 6532600 6249000 0 0 0 7856600 6080500 0 0 0 0 10583000 10098000 0 0 0 0 17043 1082 16510 316779;316780;316781;316782;316783;316784;316785 193824;193825;193826 193825 3 QPLQSGDR Unmodified 899.44609 0.44609374 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 10.611 11.414 2 0.0097673 2734 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.046 74.532 569930000 18144000 22285000 17192000 0 0 0 108100000 105420000 0 0 0 0 0 71943000 70978000 0 0 0 58235000 51790000 45837000 0 0 0 17044 1806 16511 316786;316787;316788;316789;316790;316791;316792;316793;316794;316795 193827;193828;193829 193827 0 QPNFTEK Unmodified 862.41848 0.418482 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.6 12.997 2 0.0047017 3002 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 102.71 50.03 4657500000 0 0 0 834850000 783400000 759620000 0 0 0 60277000 56047000 59045000 0 0 0 29050000 26287000 27392000 0 0 0 682210000 690720000 648590000 17045 939 16512 316796;316797;316798;316799;316800;316801;316802;316803;316804;316805;316806;316807;316808;316809;316810;316811;316812;316813;316814;316815 193830;193831;193832;193833;193834;193835;193836;193837;193838;193839;193840;193841;193842;193843;193844;193845;193846;193847;193848;193849;193850;193851;193852;193853;193854;193855 193838 26 QPNFTEKLELPSLQDFGALLEEQSK Unmodified 2860.4495 0.44945436 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 2 1 1 1 1 1 1 1 3 4 4 54.778 53.536 2;3;4 4.2667E-50 19538 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 323.2 322.01 6607200000 0 0 0 996270000 1036200000 1072200000 0 0 0 72393000 50762000 58784000 5452900 1913600 0 43815000 57296000 62621000 0 0 0 1014300000 1131900000 1003300000 17046 939 16513 316816;316817;316818;316819;316820;316821;316822;316823;316824;316825;316826;316827;316828;316829;316830;316831;316832;316833;316834;316835;316836;316837;316838;316839;316840;316841;316842;316843;316844;316845;316846;316847 193856;193857;193858;193859;193860;193861;193862;193863;193864;193865;193866;193867;193868;193869;193870;193871;193872;193873;193874;193875;193876;193877;193878 193874 23 QPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVR Unmodified 3978.0626 0.062613427 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 55.566 54.199 3;4;5 5.9724E-56 19956 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 238.17 236.88 5094000000 0 0 0 1095900000 1043500000 1083900000 0 0 0 0 0 19585000 0 0 0 0 0 0 0 0 0 604990000 650190000 596000000 17047 939 16514 316848;316849;316850;316851;316852;316853;316854;316855;316856;316857;316858;316859;316860;316861;316862;316863;316864;316865;316866 193879;193880;193881;193882;193883;193884;193885;193886;193887;193888;193889;193890;193891;193892;193893;193894;193895 193890 17 QPNGYTEPLLHAWR Unmodified 1680.8372 0.83723877 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 33.243 31.972 3 0.012099 15120 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 36.77 34.655 113520000 30133000 24667000 26936000 0 0 0 0 0 0 0 0 0 4038700 3459000 4458900 0 0 0 0 11245000 8587300 0 0 0 17048 1465 16515 316867;316868;316869;316870;316871;316872;316873;316874 193896 193896 1 QPQDIDTMFTFSMEGNNQPTAHR Unmodified 2664.1697 0.16968424 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.405 41.665 3 6.5502E-29 20144 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 194.08 193.69 301820000 13832000 9076400 8799700 5196400 4975900 4779200 15871000 19350000 17051000 7372100 9747700 6525200 19748000 18464000 23864000 0 0 0 34538000 35046000 30581000 6862600 4775600 5360500 17049 1427 16516 316875;316876;316877;316878;316879;316880;316881;316882;316883;316884;316885;316886;316887;316888;316889;316890;316891;316892;316893;316894;316895 193897;193898;193899;193900;193901;193902;193903;193904;193905;193906;193907;193908;193909;193910;193911;193912;193913 193907 17 QPQDPLLVPLFTLIR Unmodified 1749.0189 0.018891534 1790 P75915 ycdY Chaperone protein YcdY yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.796 54.36 2 1.2593E-05 25773 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 89.301 89.301 543650000 60305000 65135000 61724000 1224700 1184000 1393100 5097700 3216900 15834000 0 0 3709500 46092000 41083000 45111000 0 0 0 66249000 63204000 61229000 0 1858000 0 17050 1790 16517 316896;316897;316898;316899;316900;316901;316902;316903;316904;316905;316906;316907;316908;316909;316910;316911;316912 193914;193915;193916;193917;193918;193919 193919 6 QPSDVLVALGYASWEK Unmodified 1761.8938 0.8937506 467 P0A8W5 yqgE UPF0301 protein YqgE yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 53.16 51.772 2 1.3418E-06 25592 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.65 99.216 19496000 10563000 0 2510600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6422800 0 0 0 17051 467 16518 316913;316914;316915 193920 193920 1 QPSEQELR Unmodified 985.48287 0.48287317 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 11.922 12.621 2 0.00042084 3409 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.09 86.335 68677000 23454000 24287000 20935000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17052 1111 16519 316916;316917;316918 193921;193922;193923 193923 3 QPSQEELSIAR Unmodified 1256.6361 0.63607935 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 20.172 20.527 2 3.338E-14 8147 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 209.39 203.28 5352300000 550510000 497450000 501100000 724690 963740 779370 1059900000 964250000 1039300000 1889100 0 0 141750000 114790000 109350000 0 0 0 132960000 120920000 115650000 0 0 0 17053 428 16520 316919;316920;316921;316922;316923;316924;316925;316926;316927;316928;316929;316930;316931;316932;316933;316934;316935;316936 193924;193925;193926;193927;193928;193929;193930;193931;193932;193933;193934;193935;193936;193937 193927 13 QPSSLSPLVQLAGIR Unmodified 1564.8937 0.89369102 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 49.027 47.683 2 0.044002 23251 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 48.004 30.568 111800000 4724000 4833100 4142200 0 0 0 9593200 8847100 11046000 0 0 922430 9914100 8244200 9674000 0 0 0 12646000 11545000 15671000 0 0 0 17054 1754 16521 316937;316938;316939;316940;316941;316942;316943;316944;316945;316946;316947;316948;316949 193938 193938 0 QPTPGIQAK Unmodified 938.51853 0.5185304 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 12.191 12.968 2 0.00090178 3679 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.299 61.279 224630000 42426000 44346000 47662000 0 0 0 25059000 29995000 29995000 0 0 0 2282700 0 0 0 0 0 0 2864900 0 0 0 0 17055 995 16522 316950;316951;316952;316953;316954;316955;316956;316957 193939 193939 1 QPVDAPSPAK Unmodified 1008.524 0.52400971 790 P0ADI7 yecD Isochorismatase family protein YecD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.136 12.968 2 0.00053633 3659 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 96.668 60.273 256380000 17936000 23302000 21201000 0 0 0 32429000 33828000 30294000 0 0 0 16596000 9194700 15574000 0 0 0 21547000 15634000 18842000 0 0 0 17056 790 16523 316958;316959;316960;316961;316962;316963;316964;316965;316966;316967;316968;316969 193940;193941;193942;193943;193944 193941 5 QPVDVTPVWMMR Unmodified 1457.7159 0.71592635 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 45.598 44.186 2 1.9978E-06 21368 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 144.79 139.83 167680000 18847000 15050000 12965000 0 0 0 0 15109000 12800000 0 0 0 14871000 0 17254000 0 0 0 19175000 22926000 18682000 0 0 0 17057 1332 16524 316970;316971;316972;316973;316974;316975;316976;316977;316978;316979 193945;193946;193947;193948;193949 193945 5 QPVGTGPYQLSEYR Unmodified 1593.7787 0.77872084 1975 Q47622 sapA Peptide transport periplasmic protein SapA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 29.501 28.243 2 0.00054659 13508 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.313 81.626 19961000 0 0 0 0 0 0 3836600 0 0 0 0 0 1492300 0 2306000 0 0 0 4792600 4024600 3508700 0 0 0 17058 1975 16525 316980;316981;316982;316983;316984;316985 193950 193950 1 QPVWLDEYR Unmodified 1204.5877 0.58767259 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.549 33.993 2 0.00038023 15729 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 111.74 102.78 109240000 6906400 5785800 5885100 0 0 0 9237500 9705100 12713000 0 0 0 9650100 6907700 8851100 0 0 0 11602000 11533000 10463000 0 0 0 17059 1383 16526 316986;316987;316988;316989;316990;316991;316992;316993;316994;316995;316996;316997 193951;193952;193953;193954;193955 193954 3 QQAAAIMR Unmodified 887.46472 0.46472069 1766 P75736 ybfF Esterase YbfF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.003 13.876 2 0.013702 4264 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.039 56.885 143940000 24581000 18417000 18735000 0 0 2949100 9095400 8572900 9987900 0 0 0 7143000 7268500 0 0 0 0 11961000 14620000 10608000 0 0 0 17060 1766 16527 316998;316999;317000;317001;317002;317003;317004;317005;317006;317007;317008;317009;317010 193956;193957;193958;193959;193960;193961 193956 6 QQAEVTEK Unmodified 931.46108 0.4610751 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 7.9435 8.7822 2 0.01678 2327 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.981 49.198 49066000 5804600 4203200 4097300 0 0 1325600 6436600 4987100 3588000 0 0 0 0 2272700 0 0 0 0 5630400 5062400 5658000 0 0 0 17061 1183 16528 317011;317012;317013;317014;317015;317016;317017;317018;317019;317020;317021 193962;193963;193964;193965;193966;193967;193968;193969 193966 8 QQALMLR Unmodified 858.47456 0.47455709 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 1 2 2 1 1 1 1 1 1 1 2 2 2 19.785 19.993 2 0.014935 5790 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 82.263 35.496 420810000 37649000 38168000 30033000 3822400 3579400 3133000 49359000 45772000 35115000 0 22887000 21278000 0 0 18316000 5467400 5339600 5948300 25601000 23169000 25201000 6801200 7840000 6333400 17062 956 16529 317022;317023;317024;317025;317026;317027;317028;317029;317030;317031;317032;317033;317034;317035;317036;317037;317038;317039;317040;317041;317042;317043;317044;317045;317046;317047;317048;317049 193970;193971;193972;193973;193974 193972 4 QQALVLINEDNAK Unmodified 1454.7729 0.77290718 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.598 28.338 2 2.6071E-12 13164 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 187.99 184.12 145950000 10347000 9809500 10591000 0 0 0 12987000 13570000 13600000 0 0 0 12624000 10800000 12509000 0 0 0 12987000 12086000 14043000 0 0 0 17063 186 16530 317050;317051;317052;317053;317054;317055;317056;317057;317058;317059;317060;317061 193975;193976;193977;193978;193979;193980;193981;193982;193983;193984 193978 10 QQAPAHPYSLLEPQR Unmodified 1733.8849 0.88491725 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 2 1 2 1 1 1 24.21 23.184 2;3 6.6079E-07 10492 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.95 128.51 258380000 0 0 3069700 0 0 0 48943000 51658000 43320000 0 1401600 1055900 26481000 16579000 29053000 0 0 0 10521000 11268000 15027000 0 0 0 17064 1087 16531 317062;317063;317064;317065;317066;317067;317068;317069;317070;317071;317072;317073;317074;317075;317076;317077;317078 193985;193986;193987;193988;193989;193990;193991;193992;193993;193994 193986 10 QQAQAQLPEAITQAVIGRPINFQGLGGDEANTQAQGILER Unmodified 4230.1781 0.17814574 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 53.805 52.367 4 5.1702E-18 20881 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 118.81 117.47 24024000 0 0 0 0 0 0 0 0 0 3070500 5256900 4154200 0 0 0 0 0 0 0 0 0 0 0 11543000 17065 1448 16532 317079;317080;317081;317082 193995 193995 1 QQAQVEQVLK Unmodified 1169.6404 0.64043645 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.47 18.859 2 1.6268E-05 7206 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 176.6 137.64 1376700000 77348000 115890000 86286000 0 0 0 149430000 131260000 128700000 2225900 2983900 2663400 99142000 94634000 74043000 0 0 0 148770000 131350000 129550000 1679500 746170 0 17066 59 16533 317083;317084;317085;317086;317087;317088;317089;317090;317091;317092;317093;317094;317095;317096;317097;317098;317099 193996;193997;193998;193999;194000;194001;194002;194003;194004;194005;194006;194007;194008;194009 193999 14 QQASLEEQNNDALSPAIR Unmodified 1982.9657 0.96574634 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 28.16 26.831 2;3 1.1083E-110 12603 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 380.67 375.59 3743300000 373120000 330160000 318730000 5667400 5726500 5050200 191430000 169660000 187240000 2972700 7268200 4121400 210880000 211350000 225750000 1844400 0 0 466880000 506670000 466430000 17353000 18557000 16477000 17067 938 16534 317100;317101;317102;317103;317104;317105;317106;317107;317108;317109;317110;317111;317112;317113;317114;317115;317116;317117;317118;317119;317120;317121;317122;317123;317124;317125;317126;317127;317128;317129;317130;317131;317132;317133;317134;317135;317136;317137;317138;317139;317140;317141 194010;194011;194012;194013;194014;194015;194016;194017;194018;194019;194020;194021;194022;194023;194024;194025;194026;194027;194028;194029;194030;194031;194032;194033;194034;194035 194010 26 QQAVNQTATSDALANQLTALQK Unmodified 2313.1925 0.19245182 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.572 37.719 3 1.9878E-10 18318 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.25 125.17 143950000 5999100 5328600 5418600 3050100 3398800 2916600 8982400 8139800 12592000 6916500 5719200 5237500 8837600 9020000 8013900 0 0 0 9866800 15929000 11542000 2692800 0 4350800 17068 201 16535 317142;317143;317144;317145;317146;317147;317148;317149;317150;317151;317152;317153;317154;317155;317156;317157;317158;317159;317160;317161 194036;194037;194038;194039;194040;194041 194037 6 QQEALALSDELIAELK Unmodified 1769.9411 0.94109472 1551 P41407 azoR FMN-dependent NADH-azoreductase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.707 52.267 2 1.6082E-10 25844 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 152.74 141.53 149020000 20067000 20601000 18748000 0 0 0 9728800 10089000 7615700 0 0 0 9472000 8790900 7708900 0 0 0 12353000 11786000 12058000 0 0 0 17069 1551 16536 317162;317163;317164;317165;317166;317167;317168;317169;317170;317171;317172;317173 194042;194043;194044;194045 194044 4 QQEATQPDDVIR Unmodified 1398.6739 0.67392142 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.634 18.074 2 1.265E-11 6335 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 183.72 179.11 1384100000 62534000 71463000 67964000 4573900 3591700 3285700 76148000 89073000 86618000 7023100 6837200 6664500 94091000 91870000 89109000 9025000 5214200 5388200 185830000 175220000 182030000 20619000 21029000 18944000 17070 1819 16537 317174;317175;317176;317177;317178;317179;317180;317181;317182;317183;317184;317185;317186;317187;317188;317189;317190;317191;317192;317193;317194;317195;317196;317197 194046;194047;194048;194049;194050;194051;194052;194053;194054;194055;194056;194057;194058;194059;194060;194061;194062;194063 194061 18 QQEIAFSDK Unmodified 1064.5138 0.51383895 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 18.067 18.752 2 0.0031935 6966 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 82.452 65.213 624030000 182700000 233360000 181940000 0 0 0 0 2625500 0 0 0 0 4541600 4809900 6950700 0 0 0 0 7108400 0 0 0 0 17071 217 16538 317198;317199;317200;317201;317202;317203;317204;317205 194064;194065;194066;194067;194068 194064 4 QQEIAFTDK Unmodified 1078.5295 0.52948901 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.354 19.845 2 0.00043189 7509 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.41 94.264 452220000 94333000 88754000 83287000 0 0 0 17147000 18272000 17341000 0 0 0 18305000 15875000 14359000 0 0 0 28033000 27671000 28839000 0 0 0 17072 887 16539 317206;317207;317208;317209;317210;317211;317212;317213;317214;317215;317216;317217 194069;194070;194071 194070 3 QQEMNTQTGR Unmodified 1191.5302 0.53023407 263 P0A6M4 dtd D-aminoacyl-tRNA deacylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 10.523 11.346 2 2.7865E-12 2632 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 210.37 206.39 64864000 14378000 15393000 13792000 0 0 0 0 0 0 0 0 0 4500500 4407000 0 0 0 0 0 6769200 5624300 0 0 0 17073 263 16540 317218;317219;317220;317221;317222;317223;317224 194072;194073 194073 2 QQENEAR Unmodified 873.39406 0.39405816 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS 1 4.3824 5.3976 2 0.014893 810 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 82.305 62.945 6748000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6748000 0 0 0 0 0 0 0 0 0 17074 1197 16541 317225 194074 194074 1 QQESFIHHIQIGR Unmodified 1591.8219 0.82192306 960 P0AFQ7 ycfH Uncharacterized deoxyribonuclease YcfH yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.055 21.367 4 0.088241 8555 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 22.316 11.372 129770000 12989000 14457000 0 0 0 0 11448000 11322000 13261000 0 0 0 12132000 8985600 10421000 0 0 0 9931000 11775000 13051000 0 0 0 17075 960 16542 317226;317227;317228;317229;317230;317231;317232;317233;317234;317235;317236 194075;194076 194075 2 QQEVFDLIR Unmodified 1146.6033 0.60332266 330 P0A7C2 lexA LexA repressor yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.319 37.478 2 0.00088897 18232 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.629 88.364 102740000 10333000 9795500 8500800 1131600 1192300 1057600 7814000 7330400 7808100 1781800 2702400 1794400 5734700 4432000 5008600 0 0 0 8333700 7872300 8725700 0 1386900 0 17076 330 16543 317237;317238;317239;317240;317241;317242;317243;317244;317245;317246;317247;317248;317249;317250;317251;317252;317253;317254;317255 194077;194078;194079;194080;194081 194080 5 QQFAQVTNPPIDPLR Unmodified 1722.9053 0.90531834 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 1 2 2 1 39.62 37.932 2;3 1.0735E-09 18709 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 199.03 193.19 490690000 99173000 82531000 68394000 468410 0 0 42269000 37056000 34527000 0 0 0 18552000 19831000 16676000 0 0 0 24269000 25136000 21809000 0 0 0 17077 218 16544 317256;317257;317258;317259;317260;317261;317262;317263;317264;317265;317266;317267;317268;317269;317270;317271;317272;317273;317274;317275;317276;317277;317278 194082;194083;194084;194085;194086;194087;194088;194089;194090;194091;194092 194084 11 QQFATMGER Unmodified 1066.4866 0.48657834 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.249 17.059 2 0.0037605 5951 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 80.438 76.453 72975000 7091600 7134500 6935100 0 0 0 6941100 7416800 8784400 0 0 0 3384700 4181900 3742600 0 0 0 5807800 5583700 5971000 0 0 0 17078 843 16545 317279;317280;317281;317282;317283;317284;317285;317286;317287;317288;317289;317290 194093;194094;194095;194096;194097 194096 5 QQFDIAIQAAIGTHIIAR Unmodified 1965.0796 0.07959431 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 46.826 45.062 3 9.7999E-06 17846 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 96.666 94.974 20056000 0 0 0 1082200 1303900 1473100 0 0 0 2378100 0 2667300 0 0 0 0 0 0 0 0 0 0 6707200 4444200 17079 1633 16546 317291;317292;317293;317294;317295;317296;317297;317298 194098;194099 194098 2 QQFVGEFTGER Unmodified 1296.6099 0.6098646 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.56 26.412 2 1.7568E-05 12429 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.16 156.26 370110000 29835000 28218000 28574000 0 0 0 31135000 24824000 30618000 0 0 0 24128000 30779000 26597000 0 0 0 35863000 42098000 37440000 0 0 0 17080 1856 16547 317299;317300;317301;317302;317303;317304;317305;317306;317307;317308;317309;317310 194100;194101;194102;194103;194104;194105;194106 194100 7 QQGVAFPNDFR Unmodified 1277.6153 0.61528433 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.407 30.05 2 7.0369E-06 14082 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 150.35 145.74 2355300000 192960000 187340000 162540000 0 0 0 358620000 352600000 373420000 0 0 0 126400000 109410000 110900000 0 0 0 130250000 132990000 117900000 0 0 0 17081 449 16548 317311;317312;317313;317314;317315;317316;317317;317318;317319;317320;317321;317322 194107;194108;194109;194110;194111;194112;194113 194109 7 QQHSDVRPSR Unmodified 1208.601 0.60103125 911 P0AF50 yjbR Uncharacterized protein YjbR yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 4.7388 5.6767 3 0.13151 1063 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 26.116 16.429 218000000 0 0 0 2479500 2182400 1191100 58064000 59256000 53028000 0 0 0 7930400 6147700 3489900 0 0 0 9933700 7637900 6662500 0 0 0 17082 911 16549 317323;317324;317325;317326;317327;317328;317329;317330;317331;317332;317333;317334 194114 194114 1 QQIEEATSDYDR Unmodified 1453.6321 0.63211618 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.283 17.031 2 2.1637E-23 5906 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 237.51 237.51 6061500000 588540000 579520000 520230000 2269000 2408300 2137200 548650000 584860000 586860000 0 0 0 387630000 335000000 376190000 0 482580 603030 648120000 449380000 448640000 0 0 0 17083 240 16550 317335;317336;317337;317338;317339;317340;317341;317342;317343;317344;317345;317346;317347;317348;317349;317350;317351 194115;194116;194117;194118;194119;194120;194121;194122;194123;194124;194125;194126;194127;194128;194129 194120 15 QQIEEATSDYDREK Unmodified 1710.7697 0.7696723 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 13.694 14.318 2;3 6.9725E-56 4502 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 307.05 303.73 4915500000 356800000 433850000 326150000 33614000 29264000 27555000 413340000 382650000 375210000 41388000 38323000 40800000 285530000 311590000 307570000 25649000 14495000 16314000 496840000 392480000 452310000 42684000 32552000 38517000 17084 240 16551 317352;317353;317354;317355;317356;317357;317358;317359;317360;317361;317362;317363;317364;317365;317366;317367;317368;317369;317370;317371;317372;317373;317374;317375;317376;317377;317378;317379;317380;317381;317382;317383;317384;317385;317386;317387;317388;317389;317390;317391;317392;317393;317394;317395;317396;317397 194130;194131;194132;194133;194134;194135;194136;194137;194138;194139;194140;194141;194142;194143;194144;194145;194146;194147;194148;194149;194150;194151;194152;194153;194154;194155;194156;194157;194158;194159;194160;194161;194162;194163;194164;194165 194139 36 QQIGVVGMAVMGR Oxidation (M) 1360.6955 0.69552526 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 1 1 2 2 2 1 1 1 2 1 1 30.232 28.806 2 0.0039721 13956 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.157 62.403 125570000 8709000 5323100 4310200 0 0 0 21326000 17796000 12119000 0 0 0 7013000 6506400 7202100 0 0 0 15734000 10875000 8657300 0 0 0 17085 24 16552 317398;317399;317400;317401;317402;317403;317404;317405;317406;317407;317408;317409;317410;317411;317412;317413;317414 194166;194167;194168 194167 9 3 QQIGVVGMAVMGR Unmodified 1344.7006 0.70061064 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.646 35.904 2 2.5554E-07 17261 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.06 142.11 4899300000 292910000 248160000 272070000 0 913470 0 467060000 448890000 394320000 0 1146400 0 418420000 404690000 422600000 0 0 0 506090000 526750000 495260000 0 0 0 17086 24 16552 317415;317416;317417;317418;317419;317420;317421;317422;317423;317424;317425;317426;317427;317428 194169;194170;194171;194172;194173;194174;194175;194176;194177;194178;194179;194180 194176 10 QQIIGLAEVR Unmodified 1125.6506 0.6506072 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 31.873 30.501 2 4.7492E-05 13812 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 137.13 113.28 888070000 111690000 103450000 106050000 3645400 4017800 4284000 43696000 42200000 38035000 30366000 16235000 14119000 50421000 51420000 47345000 21454000 15826000 16748000 47092000 56809000 46753000 5004800 6036300 5381500 17087 297 16553 317429;317430;317431;317432;317433;317434;317435;317436;317437;317438;317439;317440;317441;317442;317443;317444;317445;317446;317447;317448;317449;317450;317451;317452;317453 194181;194182;194183;194184;194185;194186;194187;194188;194189;194190;194191 194190 11 QQILTEEQYLDALEEFGDEFDAK Unmodified 2730.2548 0.25483688 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 55.226 53.966 2;3 1.3392E-135 21688 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 400.29 399.19 14560000000 82743000 68575000 60216000 3413100 3342100 0 41059000 37867000 46178000 1124600000 890290000 902910000 70335000 62985000 54397000 2347900000 2418000000 1781200000 108970000 108070000 86518000 1393200000 1474700000 1392500000 17088 458 16554 317454;317455;317456;317457;317458;317459;317460;317461;317462;317463;317464;317465;317466;317467;317468;317469;317470;317471;317472;317473;317474;317475;317476;317477;317478;317479;317480;317481;317482;317483;317484;317485;317486;317487;317488;317489;317490;317491;317492;317493;317494;317495;317496;317497 194192;194193;194194;194195;194196;194197;194198;194199;194200;194201;194202;194203;194204;194205;194206;194207;194208;194209;194210;194211;194212;194213 194202 22 QQLAAEQYK Unmodified 1077.5455 0.54547343 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.655 14.132 2 0.00043569 4278 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 110.31 98.103 240140000 0 0 0 0 0 0 28613000 28829000 20561000 4842500 4717900 4840800 21506000 18549000 16498000 936820 1255300 1048700 26815000 24901000 22868000 4969300 3752500 4638200 17089 1197 16555 317498;317499;317500;317501;317502;317503;317504;317505;317506;317507;317508;317509;317510;317511;317512;317513;317514;317515 194214;194215;194216;194217;194218;194219;194220;194221 194215 8 QQLAQLGK Unmodified 884.50797 0.50796571 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.5 15.291 2 0.15818 5050 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 40.573 26.797 126280000 29456000 26612000 22476000 0 1053100 0 10438000 10637000 8560300 0 0 0 4082700 2286000 3630700 0 0 0 0 3999200 3052000 0 0 0 17090 119 16556 317516;317517;317518;317519;317520;317521;317522;317523;317524;317525;317526;317527 194222 194222 1 QQLATDNIDITPVSVIK Unmodified 1854.0098 0.0098429899 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 1 1 2 1 2 1 1 43.949 42.384 2;3 3.4895E-09 20932 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 131.26 127.94 255260000 17265000 14257000 12097000 0 0 0 28992000 29092000 25256000 0 0 0 17906000 17189000 15702000 0 0 0 32459000 23622000 21419000 0 0 0 17091 528 16557 317528;317529;317530;317531;317532;317533;317534;317535;317536;317537;317538;317539;317540;317541;317542;317543 194223;194224;194225;194226;194227;194228 194224 6 QQLEELESDWR Unmodified 1431.663 0.66302238 1369 P31473 ravA ATPase RavA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 35.014 33.525 2 0.03541 16346 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 51.927 45.622 40339000 6110700 4574100 0 0 0 0 8178100 5868200 0 0 0 0 0 0 2757600 0 0 0 4001300 4944700 3904700 0 0 0 17092 1369 16558 317544;317545;317546;317547;317548;317549;317550;317551 194229 194229 1 QQLGLSPQDSLGTR Unmodified 1498.774 0.77396981 626 P0AB38 lpoB Penicillin-binding protein activator LpoB yes yes 0 0 0 By MS/MS 1 28.95 27.146 2 0.0056214 12926 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 62.338 0 13163000 0 0 0 0 0 0 13163000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17093 626 16559 317552 194230 194230 1 QQLHSQTPR Unmodified 1093.5629 0.56285483 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 1 1 2 2 1 2 2 2 8.9567 9.7682 2;3 0.0068029 2031 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.628 65.428 102700000 3241500 8375700 6087100 0 0 0 0 0 0 2050900 0 0 5914800 5266100 1526600 0 0 0 21079000 21504000 27658000 0 0 0 17094 1348 16560 317553;317554;317555;317556;317557;317558;317559;317560;317561;317562;317563;317564;317565;317566;317567;317568;317569 194231;194232;194233;194234;194235;194236 194235 5 QQLLYTVAEK Unmodified 1191.6499 0.6499385 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 27.121 25.979 2 0.00061487 11616 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.52 92.993 129960000 22400000 18636000 18862000 0 0 0 15884000 10154000 10539000 0 0 0 6968400 8250500 8110600 0 0 0 0 0 10158000 0 0 0 17095 1508 16561 317570;317571;317572;317573;317574;317575;317576;317577;317578;317579 194237;194238;194239;194240;194241;194242;194243;194244;194245 194242 8 QQLNSLTK Unmodified 930.51345 0.51344502 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 12.883 13.704 2 0.1362 4157 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 51.059 19.756 246230000 49971000 51763000 0 0 0 0 0 4736600 5937400 0 0 0 0 4305400 0 0 0 0 64445000 60369000 4697400 0 0 0 17096 1047 16562 317580;317581;317582;317583;317584;317585;317586;317587 194246 194246 0 QQLPDDATLR Unmodified 1155.5884 0.58840088 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.999 21.2 2 0.00016671 8532 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.582 94.597 789020000 0 104290000 102080000 1484200 1795800 2139900 113730000 128450000 112140000 0 0 0 87224000 0 0 1843800 1262200 0 132570000 0 0 0 0 0 17097 688 16563 317588;317589;317590;317591;317592;317593;317594;317595;317596;317597;317598;317599;317600;317601;317602;317603;317604 194247;194248;194249;194250;194251;194252;194253;194254;194255;194256;194257 194251 11 QQLTEAAPPLPVVSVPHMR Unmodified 2069.1092 0.10917988 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 40.183 38.603 3 5.2985E-14 18882 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.45 99.55 115730000 39240000 36902000 31801000 2454800 2606700 2722800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17098 46 16564 317605;317606;317607;317608;317609;317610 194258;194259;194260;194261 194259 4 QQLWIPK Unmodified 911.52289 0.52288749 1490 P37745 rfbC dTDP-4-dehydrorhamnose 3,5-epimerase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.133 27.877 2 0.015808 12362 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 81.381 72.698 649790000 30297000 31516000 29931000 0 0 0 56825000 54870000 54087000 0 0 0 50157000 45930000 50627000 0 0 0 91475000 75343000 78728000 0 0 0 17099 1490 16565 317611;317612;317613;317614;317615;317616;317617;317618;317619;317620;317621;317622 194262;194263;194264;194265;194266;194267;194268;194269 194267 8 QQLYQDHQWMR Unmodified 1531.699 0.69903073 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 3 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 22.049 21.788 2;3 1.1349E-07 9073 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.21 165.62 621040000 19631000 14821000 0 0 0 0 47425000 47411000 44156000 1949000 12390000 15844000 35900000 39233000 31771000 4097500 3616300 3836100 56322000 64937000 70432000 46127000 31847000 29295000 17100 205 16566 317623;317624;317625;317626;317627;317628;317629;317630;317631;317632;317633;317634;317635;317636;317637;317638;317639;317640;317641;317642;317643;317644;317645;317646;317647;317648;317649;317650;317651;317652;317653;317654;317655;317656;317657;317658 194270;194271;194272;194273;194274;194275;194276;194277;194278;194279;194280;194281;194282;194283;194284;194285;194286;194287;194288;194289;194290;194291;194292;194293;194294;194295;194296 194286 26 QQMLPNTNGGMLNSNR Unmodified 1773.825 0.82503588 818 P0ADX7 yhhA Uncharacterized protein YhhA yes yes 0 0 0 By MS/MS By matching 1 1 27.331 26.427 2 0.048014 12055 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 45.183 41.467 8829500 4916400 0 3913100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17101 818 16567 317659;317660 194297 194297 0 QQNEEAAK Unmodified 916.42502 0.42502394 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.9404 6.6353 2 0.0010111 1500 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 113.7 103.95 1409500000 195520000 186550000 152540000 25600000 23401000 22887000 12922000 15825000 17380000 2732600 2225600 0 83913000 73501000 76043000 0 0 661320 165930000 152900000 139860000 21695000 16009000 21364000 17102 133 16568 317661;317662;317663;317664;317665;317666;317667;317668;317669;317670;317671;317672;317673;317674;317675;317676;317677;317678;317679;317680;317681 194298;194299;194300;194301;194302;194303;194304;194305;194306;194307;194308 194299 11 QQNEEAAKR Unmodified 1072.5261 0.52613497 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 4 4 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 4 3 3 6.3553 6.9784 1;2;3 7.1723E-05 728 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 147.16 143.02 4325200000 32143000 27044000 28831000 598320000 649660000 549830000 16726000 20061000 23856000 86227000 74665000 72844000 25363000 27708000 24393000 27653000 28173000 23624000 64281000 60697000 57238000 700410000 543850000 561580000 17103 133 16569 317682;317683;317684;317685;317686;317687;317688;317689;317690;317691;317692;317693;317694;317695;317696;317697;317698;317699;317700;317701;317702;317703;317704;317705;317706;317707;317708;317709;317710;317711;317712;317713;317714;317715;317716;317717;317718;317719;317720;317721;317722;317723;317724;317725;317726;317727;317728;317729;317730;317731;317732;317733;317734;317735;317736;317737;317738 194309;194310;194311;194312;194313;194314;194315;194316;194317;194318;194319;194320;194321;194322;194323;194324;194325;194326;194327;194328;194329;194330;194331;194332;194333;194334;194335;194336;194337;194338;194339;194340;194341;194342;194343;194344;194345;194346;194347 194337 37 QQNVPVFLLGDR Unmodified 1384.7463 0.7462985 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.338 41.696 2 2.9275E-05 20633 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 115.7 95.938 63374000 0 0 0 0 0 0 17320000 22316000 16430000 0 0 0 2193500 2800800 2313000 0 0 0 0 0 0 0 0 0 17104 1318 16570 317739;317740;317741;317742;317743;317744 194348;194349;194350 194350 3 QQPYFLNTLQTVASER Unmodified 1893.9585 0.95847612 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.534 46.144 2 4.4679E-08 22895 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 135.02 128.58 71109000 5892700 6529800 3920400 0 0 0 7736200 9659300 6303900 0 0 0 4677200 3015900 3601400 0 0 0 6896200 6622900 6252700 0 0 0 17105 1078 16571 317745;317746;317747;317748;317749;317750;317751;317752;317753;317754;317755;317756 194351;194352 194351 1 QQQALQYELEK Unmodified 1376.6936 0.69359423 814 P0ADW3 yhcB Inner membrane protein YhcB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 23.698 22.912 2 9.0155E-05 8317 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 121.73 116.75 601080000 17619000 20529000 15548000 4394300 3242600 3934500 63707000 68397000 54124000 18704000 12921000 13280000 49054000 40106000 44331000 2687500 1440600 2141500 51016000 51310000 44986000 6062800 6822900 4723800 17106 814 16572 317757;317758;317759;317760;317761;317762;317763;317764;317765;317766;317767;317768;317769;317770;317771;317772;317773;317774;317775;317776;317777;317778;317779;317780;317781 194353;194354;194355;194356;194357;194358;194359;194360;194361;194362;194363;194364;194365;194366;194367;194368;194369;194370;194371 194354 19 QQQDLVNDALNVE Unmodified 1484.7107 0.71070086 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.224 40.458 2 2.2321E-09 19652 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 175.93 169.69 504060000 42739000 33918000 36223000 0 0 0 23730000 25225000 0 1943400 0 0 37514000 38332000 36230000 0 0 0 84576000 76936000 66699000 0 0 0 17107 937 16573 317782;317783;317784;317785;317786;317787;317788;317789;317790;317791;317792;317793 194372;194373;194374 194374 3 QQQENAGEMELADLEGFYR Unmodified 2226.9852 0.98516116 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 49.921 48.515 2;3 2.0398E-55 22894 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 277.21 277.21 543980000 40931000 33965000 25558000 0 0 0 42528000 38678000 38685000 0 0 0 52802000 42256000 54931000 0 0 0 57739000 56833000 59070000 0 0 0 17108 1073 16574 317794;317795;317796;317797;317798;317799;317800;317801;317802;317803;317804;317805;317806;317807;317808;317809;317810;317811;317812;317813;317814;317815;317816;317817 194375;194376;194377;194378;194379;194380;194381;194382;194383;194384;194385;194386;194387;194388;194389;194390;194391 194389 14 QQQEVAK Unmodified 829.42938 0.42938104 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 10.28 10.402 2 0.001975 1802 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 120.49 29.503 4381100000 0 0 0 0 0 0 0 0 0 305270000 264060000 266740000 0 0 0 1034100000 705660000 679510000 0 0 0 334200000 331340000 460170000 17109 463 16575 317818;317819;317820;317821;317822;317823;317824;317825;317826;317827 194392;194393;194394;194395;194396;194397;194398;194399 194395 8 QQQGDCPTGHAVITLAGDLPAK Unmodified 2276.1219 0.12192941 420 P0A8D6 ymdB O-acetyl-ADP-ribose deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 33.099 31.642 3 7.6054E-05 14957 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.67 77.572 250740000 38016000 40094000 27820000 0 1077700 0 29886000 30230000 24510000 0 0 0 9846400 6778800 9200200 0 0 0 11803000 12557000 8920100 0 0 0 17110 420 16576 317828;317829;317830;317831;317832;317833;317834;317835;317836;317837;317838;317839;317840 194400;194401;194402 194401 3 QQQPLASFQNEVQPSTR Unmodified 1956.9654 0.96535241 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By matching By MS/MS 1 1 31.056 29.927 2 8.7039E-14 13951 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 162.22 160.21 13907000 9273500 4633600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17111 49 16577 317841;317842 194403 194403 1 QQQSTLNGSWVALLQTR Unmodified 1929.0068 0.0068232975 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 49.695 48.343 3 0.0058295 17438 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 48.314 39.495 9132700 0 0 0 2984400 2556700 3591700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17112 76 16578 317843;317844;317845 194404;194405 194404 2 QQTAESQAVIR Unmodified 1229.6364 0.6364137 99 P04982 rbsD D-ribose pyranase yes yes 0 0 0 By MS/MS By MS/MS 1 1 13.304 14.104 2 0.00019694 4254 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.89 5.0868 50743000 26325000 0 24418000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17113 99 16579 317846;317847 194406;194407 194407 2 QQTIGALQDFTAGLQPVLR Unmodified 2055.1113 0.11128837 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 53.147 51.708 2;3 9.4027E-14 25328 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.46 129.67 156670000 9740100 11384000 9466800 856500 0 0 12650000 12252000 13128000 0 1064500 0 12437000 13720000 14292000 0 0 0 15384000 14349000 15949000 0 0 0 17114 1230 16580 317848;317849;317850;317851;317852;317853;317854;317855;317856;317857;317858;317859;317860;317861;317862;317863;317864;317865;317866;317867;317868;317869;317870;317871;317872;317873 194408;194409;194410 194409 2 QQVASVDSNTWAR Unmodified 1460.7008 0.70080487 1099 P15028 fecB Fe(3+) dicitrate-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 22.461 21.961 2 2.7135E-09 9339 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 174.98 116 75582000 10959000 7094600 0 0 0 0 0 0 3669700 0 0 0 0 3346300 4291500 0 0 0 16035000 15148000 15037000 0 0 0 17115 1099 16581 317874;317875;317876;317877;317878;317879;317880;317881 194411;194412 194412 2 QQVDVINHLTGEAMTETR Unmodified 2040.9899 0.9898526 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 1 1 1 33.418 31.971 2;3 4.4642E-45 15582 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 259 245.04 818300000 0 88558000 85590000 0 0 0 155460000 166790000 16819000 0 0 0 100960000 84933000 82874000 0 0 0 11364000 13106000 11839000 0 0 0 17116 681 16582 317882;317883;317884;317885;317886;317887;317888;317889;317890;317891;317892;317893;317894;317895;317896;317897;317898;317899 194413;194414;194415;194416;194417;194418;194419;194420;194421;194422;194423;194424;194425;194426;194427 194413 14 QQVEGASAMGQMFR Unmodified 1538.697 0.69698182 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.269 30.835 2 3.9955E-20 14021 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 221.68 211.39 445690000 17298000 11253000 14677000 3557200 4248200 3146900 35165000 32517000 30352000 32412000 29331000 42869000 25355000 21593000 21923000 5780000 3094200 0 27396000 28466000 31673000 8300700 8736700 6548400 17117 1944 16583 317900;317901;317902;317903;317904;317905;317906;317907;317908;317909;317910;317911;317912;317913;317914;317915;317916;317917;317918;317919;317920;317921;317922 194428;194429;194430;194431;194432;194433;194434;194435;194436;194437;194438;194439;194440;194441;194442;194443;194444;194445;194446;194447 194445 20 QQVMESLDQAGWR Oxidation (M) 1562.7147 0.71474038 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 5 5 4 4 4 3 5 5 3 29.782 28.431 2 1.1161E-06 10557 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 137.98 133.96 183800000 0 4469900 0 0 0 0 0 0 0 37283000 31409000 21430000 0 0 0 25971000 12497000 9458600 0 0 0 22395000 8266100 10625000 17118 1616 16584 317923;317924;317925;317926;317927;317928;317929;317930;317931;317932;317933;317934;317935;317936;317937;317938;317939;317940;317941;317942;317943;317944;317945;317946;317947;317948;317949;317950;317951;317952;317953;317954;317955;317956;317957;317958;317959;317960;317961 194448;194449;194450;194451;194452;194453;194454;194455;194456;194457;194458;194459;194460;194461;194462;194463;194464;194465;194466;194467;194468;194469;194470;194471;194472;194473;194474;194475;194476;194477;194478;194479;194480;194481;194482 194462 570 32 QQVMESLDQAGWR Unmodified 1546.7198 0.71982575 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 3 3 3 2 2 2 3 3 3 2 2 2 2 3 3 37.12 35.769 2;3 2.8552E-17 11249 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 204.52 200.51 8468900000 23465000 28967000 22406000 0 0 0 21744000 17258000 21628000 936110000 886430000 881600000 25296000 27948000 26651000 1550500000 950040000 1013600000 33635000 39004000 41164000 613290000 633280000 675000000 17119 1616 16584 317962;317963;317964;317965;317966;317967;317968;317969;317970;317971;317972;317973;317974;317975;317976;317977;317978;317979;317980;317981;317982;317983;317984;317985;317986;317987;317988;317989;317990;317991;317992;317993;317994;317995;317996;317997;317998;317999;318000;318001;318002;318003;318004;318005;318006;318007;318008 194483;194484;194485;194486;194487;194488;194489;194490;194491;194492;194493;194494;194495;194496;194497;194498;194499;194500;194501;194502;194503;194504;194505;194506;194507;194508;194509;194510;194511;194512;194513;194514;194515 194489 30 QQVNVPLVADIHFDYR Unmodified 1912.9795 0.97954591 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 1 1 2 2 2 2 2 2 1 45.867 44.409 2;3 1.2167E-06 20670 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 122.35 108.68 754820000 70128000 77633000 66588000 4899700 0 1859600 63714000 50687000 51078000 0 0 0 46286000 56492000 47930000 0 0 0 68700000 78395000 68477000 1953400 0 0 17120 1649 16585 318009;318010;318011;318012;318013;318014;318015;318016;318017;318018;318019;318020;318021;318022;318023;318024;318025;318026;318027;318028;318029;318030;318031;318032;318033 194516;194517 194517 2 QQVWLPVESR Unmodified 1240.6564 0.65642086 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.022 33.445 2 0.00054607 12849 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 96.034 93.824 805840000 5140100 0 0 3393200 3055100 2625000 58158000 82926000 0 44099000 39560000 38759000 43692000 44801000 44477000 14451000 8991200 10051000 87125000 88800000 84849000 34190000 35762000 30933000 17121 1718 16586 318034;318035;318036;318037;318038;318039;318040;318041;318042;318043;318044;318045;318046;318047;318048;318049;318050;318051;318052;318053;318054;318055;318056 194518;194519;194520;194521;194522;194523;194524;194525;194526;194527;194528;194529;194530;194531;194532;194533;194534;194535 194526 18 QRAEEEADK Unmodified 1074.4942 0.49416614 769 P0AD57 ispB Octaprenyl-diphosphate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 4.9538 5.803 2 7.1736E-11 1310 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 205.12 170.29 133910000 13339000 10884000 12142000 0 0 0 13547000 11708000 11190000 0 0 0 6738400 6220100 7652800 0 0 0 15022000 12090000 13379000 0 0 0 17122 769 16587 318057;318058;318059;318060;318061;318062;318063;318064;318065;318066;318067;318068 194536;194537;194538;194539;194540;194541 194540 6 QREVLAR Unmodified 870.50355 0.50354903 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.271 11.839 2 6.3631E-13 2285 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 227.94 100.28 852080000 20605000 15531000 18846000 0 0 0 30096000 14871000 23649000 5957600 6703200 4634500 20930000 17219000 14117000 324850000 132140000 144370000 20352000 18651000 18564000 0 0 0 17123 1089 16588 318069;318070;318071;318072;318073;318074;318075;318076;318077;318078;318079;318080;318081;318082;318083;318084;318085;318086 194542;194543;194544;194545;194546;194547 194544 6 QRLEHLCEAEWDLLVVDEAHHLVWSEDAPSR Unmodified 3738.7849 0.78489221 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 4 3 5 6 5 4 4 4 47.965 47.027 3;4;5;6 5.5857E-110 16632 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 334.06 324.56 7190200000 0 0 0 0 0 0 0 2929600 0 517760000 384240000 393820000 0 0 0 1067900000 1770900000 1449800000 0 0 0 558330000 521900000 522650000 17124 1616 16589 318087;318088;318089;318090;318091;318092;318093;318094;318095;318096;318097;318098;318099;318100;318101;318102;318103;318104;318105;318106;318107;318108;318109;318110;318111;318112;318113;318114;318115;318116;318117;318118;318119;318120;318121;318122;318123;318124;318125;318126 194548;194549;194550;194551;194552;194553;194554;194555;194556;194557;194558;194559;194560;194561;194562;194563;194564;194565;194566;194567;194568;194569;194570;194571;194572;194573;194574;194575;194576;194577;194578;194579;194580;194581;194582 194560 35 QRPDAYDYAWLADALDR Unmodified 2037.9545 0.95445338 717 P0ACB7 hemY Protein HemY yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 49.754 48.33 3 7.2006E-05 23502 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 77.505 72.888 89473000 0 0 0 1661300 2182700 2343800 9098200 10273000 8982600 4012600 0 0 8103300 6655300 8257100 0 0 0 8965300 10577000 8360100 0 0 0 17125 717 16590 318127;318128;318129;318130;318131;318132;318133;318134;318135;318136;318137;318138;318139 194583;194584 194583 2 QRWPDVLLQFEDFAQK Unmodified 2019.0214 0.021410729 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1 1 1 53.287 51.829 3 4.0317E-11 25389 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 155.06 148.8 268430000 0 0 0 0 0 0 21080000 22089000 18015000 0 0 0 30339000 30320000 29900000 0 0 0 36958000 41090000 38641000 0 0 0 17126 1283 16591 318140;318141;318142;318143;318144;318145;318146;318147;318148;318149;318150 194585;194586;194587;194588;194589;194590;194591;194592;194593 194588 9 QSAFLQAEAR Unmodified 1119.5673 0.5672715 576 P0AA53 qmcA Protein QmcA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.597 20.763 2 0.0002684 8365 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.97 108.07 53628000 0 0 0 1489100 1289000 1251300 8921600 6547700 9027800 4181900 3207600 0 0 0 4209300 0 0 0 3739400 5931300 3831800 0 0 0 17127 576 16592 318151;318152;318153;318154;318155;318156;318157;318158;318159;318160;318161;318162 194594;194595;194596;194597;194598 194595 4 QSALDFHEFPVPGK Unmodified 1570.778 0.77799256 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 1 37.226 35.469 2;3 1.3918E-11 16990 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 177.44 170.59 1429400000 225570000 216730000 195060000 1488100 1373200 998620 94004000 78660000 82101000 0 1732500 1817000 61843000 64524000 66255000 0 0 0 106670000 116730000 109950000 1065600 1623300 1216700 17128 1872 16593 318163;318164;318165;318166;318167;318168;318169;318170;318171;318172;318173;318174;318175;318176;318177;318178;318179;318180;318181;318182;318183;318184;318185;318186;318187;318188;318189;318190;318191;318192;318193;318194 194599;194600;194601;194602;194603;194604;194605;194606;194607;194608;194609;194610;194611;194612;194613;194614;194615;194616 194610 15 QSDDLKPVFDQAFTK Unmodified 1737.8574 0.85736509 791 P0ADK0 yiaF Uncharacterized protein YiaF yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.189 32.642 3 0.0043753 12971 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 57.794 53.478 448510000 12038000 0 11423000 5764700 6055500 5869100 45163000 44395000 41931000 21734000 22375000 23776000 19991000 25479000 23790000 4137500 0 4551700 32191000 31074000 34598000 12432000 9079400 10665000 17129 791 16594 318195;318196;318197;318198;318199;318200;318201;318202;318203;318204;318205;318206;318207;318208;318209;318210;318211;318212;318213;318214;318215;318216 194617;194618;194619;194620;194621;194622;194623;194624;194625;194626 194618 10 QSDGPLPVVIVVQEIFGVHEHIR Unmodified 2567.386 0.38600667 1614 P56262 ysgA Putative carboxymethylenebutenolidase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.218 53.743 4 0.046173 26619 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.133 52.857 493680000 120900000 103940000 104410000 0 0 0 34631000 30881000 25711000 0 0 0 10896000 14526000 8106000 0 0 0 20435000 19235000 0 0 0 0 17130 1614 16595 318217;318218;318219;318220;318221;318222;318223;318224;318225;318226;318227 194627;194628;194629 194629 0 QSDPEYFFK Unmodified 1159.5186 0.51858998 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.134 30.772 2 0.0039101 14531 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.906 73.602 495690000 53922000 46003000 35619000 0 0 0 45907000 47094000 39163000 0 0 0 44752000 34518000 0 0 0 0 49429000 49780000 49505000 0 0 0 17131 1024 16596 318228;318229;318230;318231;318232;318233;318234;318235;318236;318237;318238;318239 194630;194631;194632;194633;194634;194635;194636;194637;194638;194639;194640 194632 11 QSDPEYFFKEEDR Unmodified 1688.7318 0.73183023 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.991 26.844 2;3 1.5552E-23 12359 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 231.05 224.81 960180000 80592000 98267000 71493000 0 0 0 80352000 80399000 80606000 0 0 0 61290000 58930000 58883000 0 0 0 101230000 98595000 89544000 0 0 0 17132 1024 16597 318240;318241;318242;318243;318244;318245;318246;318247;318248;318249;318250;318251;318252;318253;318254;318255;318256;318257;318258;318259;318260;318261;318262;318263 194641;194642;194643;194644;194645;194646;194647;194648;194649;194650;194651;194652;194653;194654;194655;194656;194657 194644 15 QSDVVVAVVGEAQGMAHEASSR Unmodified 2226.0699 0.069893839 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.141 41.626 3 1.8829E-28 19341 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 156.74 155.5 399470000 24766000 20655000 27349000 0 0 0 35303000 41746000 29402000 0 0 0 35187000 30896000 32797000 0 0 0 45304000 36693000 39374000 0 0 0 17133 1421 16598 318264;318265;318266;318267;318268;318269;318270;318271;318272;318273;318274;318275 194658;194659;194660;194661;194662;194663;194664 194664 7 QSELEAMCR Unmodified 1122.4798 0.4797784 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.936 18.535 2 1.0639E-07 6943 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.39 182.39 725400000 89344000 111760000 74574000 0 0 0 67567000 70124000 70544000 0 0 0 35674000 35689000 33079000 0 0 0 48596000 42246000 46197000 0 0 0 17134 43 16599 318276;318277;318278;318279;318280;318281;318282;318283;318284;318285;318286;318287 194665;194666;194667;194668;194669;194670;194671;194672;194673;194674;194675;194676 194667 12 QSGFLDPVNYR Unmodified 1294.6306 0.63060004 1462 P37194 slp Outer membrane protein slp yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.069 33.393 2 7.2922E-06 12946 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 150.08 125.3 269320000 24077000 24915000 21985000 4707100 4106200 5392700 31344000 28833000 28298000 23212000 20862000 23043000 4824300 3379900 2808800 0 0 0 0 6633000 10895000 0 0 0 17135 1462 16600 318288;318289;318290;318291;318292;318293;318294;318295;318296;318297;318298;318299;318300;318301;318302;318303;318304 194677;194678;194679;194680;194681;194682;194683;194684;194685 194679 9 QSGILAAAGIYALK Unmodified 1374.7871 0.78710068 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.774 43.259 2 4.794E-06 21625 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.67 109.52 135670000 10426000 10150000 9757900 0 0 0 18791000 12572000 14261000 0 0 0 8800400 7182700 6827800 0 0 0 12925000 11964000 12013000 0 0 0 17136 1778 16601 318305;318306;318307;318308;318309;318310;318311;318312;318313;318314;318315;318316 194686;194687;194688;194689;194690;194691;194692 194686 7 QSGVTIYPPQK Unmodified 1216.6452 0.64518747 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.515 20.929 2 0.038888 8548 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 50.353 23.099 84409000 7528400 6548000 5740200 0 0 0 7252300 8728100 8887900 0 0 0 6077500 5892300 6860600 0 0 0 8019700 6759300 6114900 0 0 0 17137 1078 16602 318317;318318;318319;318320;318321;318322;318323;318324;318325;318326;318327;318328 194693;194694;194695;194696;194697;194698;194699;194700 194693 8 QSHAISTASGVGEHFADK Unmodified 1840.8704 0.8703894 1074 P11880 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 14.657 15.428 3;4 1.5667E-17 4813 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 141.22 140.98 541650000 45330000 52113000 37591000 613110 0 0 49775000 55738000 57140000 0 0 0 35719000 35990000 29588000 0 0 0 51242000 44602000 46208000 0 0 0 17138 1074 16603 318329;318330;318331;318332;318333;318334;318335;318336;318337;318338;318339;318340;318341;318342;318343;318344;318345;318346;318347;318348;318349;318350;318351;318352;318353 194701;194702;194703;194704;194705;194706;194707;194708;194709;194710;194711 194711 11 QSINDLKIK Unmodified 1057.6132 0.61315906 667 P0ABK9 nrfA Cytochrome c-552 yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 12.834 13.519 2 0.12743 3173 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 47.082 9.3543 289150000 0 0 2128100 0 0 0 0 0 0 0 0 0 0 3221900 0 0 0 0 0 0 0 283800000 0 0 17139 667 16604 318354;318355;318356 194712 194712 1 QSLDNVK Unmodified 802.41848 0.418482 920 P0AF93 ridA 2-iminobutanoate/2-iminopropanoate deaminase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.672 12.384 2 0.011149 3268 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.086 43.086 3394900000 451070000 401390000 412010000 2108000 3244100 2298400 412760000 391280000 358620000 1191100 493510 0 121900000 109800000 106100000 1806600 0 1021400 215870000 192680000 209220000 0 0 0 17140 920 16605 318357;318358;318359;318360;318361;318362;318363;318364;318365;318366;318367;318368;318369;318370;318371;318372;318373;318374;318375 194713 194713 1 QSLEASLAETEGR Unmodified 1389.6736 0.67358707 13;7 CON__P13645;CON__P02535-1 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.436 25.853 2 9.8159E-07 8532 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 158.41 135.76 94546000 0 0 0 8900100 7744200 7957400 0 0 0 9007700 8175200 6890500 0 0 0 0 0 0 0 0 0 12495000 15744000 17631000 + 17141 13;7 16606 318376;318377;318378;318379;318380;318381;318382;318383;318384 194714;194715;194716;194717 194717 3 QSLGGLIEAYEAVAR Unmodified 1575.8257 0.82567103 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 52.331 51.168 2;3 3.2326E-12 25147 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 213.63 209.99 1200600000 308940000 262420000 301630000 0 0 0 5519900 4351400 5896800 0 0 0 37286000 35249000 33242000 1802100 0 0 68058000 67186000 69014000 0 0 0 17142 334 16607 318385;318386;318387;318388;318389;318390;318391;318392;318393;318394;318395;318396;318397;318398;318399;318400;318401;318402;318403;318404;318405;318406 194718;194719;194720;194721;194722;194723;194724;194725;194726;194727 194721 7 QSLQGLVVLMDIR Unmodified 1470.8228 0.82283426 269 P0A6P7 engB Probable GTP-binding protein EngB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.735 52.546 2 5.2724E-05 20447 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 93.058 80.102 91045000 8589200 9618900 10281000 0 0 0 5151000 5443400 4061200 4061000 0 5356800 5211100 5189300 4531100 2734900 2035000 1804200 5416300 6120400 5440200 0 0 0 17143 269 16608 318407;318408;318409;318410;318411;318412;318413;318414;318415;318416;318417;318418;318419;318420;318421;318422;318423 194728;194729;194730;194731;194732;194733 194728 1 QSLTLEELYQMFR Unmodified 1656.8181 0.81814282 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 1 54.926 53.432 2 4.7987E-18 26485 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 271.62 267.33 891790000 27251000 29099000 0 0 0 0 109850000 106170000 105130000 0 0 0 98381000 86520000 100300000 0 0 0 83919000 73131000 72046000 0 0 0 17144 1805 16609 318424;318425;318426;318427;318428;318429;318430;318431;318432;318433;318434;318435 194734;194735;194736;194737 194735 4 QSNPEDPESVLTEMAK Unmodified 1773.8091 0.80909427 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.524 39.846 2 6.8884E-19 18759 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 198.55 197.11 277470000 23734000 23980000 20122000 0 0 0 20880000 21824000 17496000 0 0 0 24863000 25455000 21502000 0 0 0 24969000 28510000 24135000 0 0 0 17145 1471 16610 318436;318437;318438;318439;318440;318441;318442;318443;318444;318445;318446;318447 194738;194739;194740;194741;194742;194743;194744;194745;194746;194747 194746 10 QSNTLLIFINQIR Unmodified 1558.8831 0.88312633 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 53.673 52.433 2;3 7.4403E-25 21420 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 305.55 281.8 1520100000 90603000 86479000 94392000 9149700 8187700 8394100 71268000 88518000 80205000 86409000 95588000 92406000 58809000 65650000 61808000 48022000 37644000 53311000 96929000 107580000 93091000 25512000 24951000 35211000 17146 343 16611 318448;318449;318450;318451;318452;318453;318454;318455;318456;318457;318458;318459;318460;318461;318462;318463;318464;318465;318466;318467;318468;318469;318470;318471;318472;318473;318474;318475;318476;318477;318478;318479;318480;318481;318482;318483;318484;318485;318486;318487;318488;318489;318490;318491;318492;318493;318494 194748;194749;194750;194751;194752;194753;194754;194755;194756;194757;194758;194759;194760;194761;194762;194763;194764;194765;194766;194767;194768;194769;194770;194771;194772;194773;194774;194775;194776;194777;194778;194779;194780;194781;194782;194783;194784;194785;194786;194787 194754 40 QSNWLSGQHGEEGGSMR Unmodified 1858.8017 0.8016579 918 P0AF70 yjeI Uncharacterized protein YjeI yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.006 18.566 3 0.00010093 6878 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 71.697 71.697 80731000 0 6042300 5032700 2310000 2026500 1763500 4011500 0 4984200 5024200 0 0 7022900 5308800 5781900 0 0 0 10403000 10836000 10184000 0 0 0 17147 918 16612 318495;318496;318497;318498;318499;318500;318501;318502;318503;318504;318505;318506;318507;318508 194788;194789;194790;194791;194792;194793;194794;194795 194791 8 QSPDINQGVDR Unmodified 1227.5844 0.58437813 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.708 14.438 2 5.801E-05 3768 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 150.35 138.5 1243700000 108060000 101190000 76545000 1910100 1709300 2059600 173170000 154390000 135660000 10118000 8017000 7465100 73883000 73259000 66571000 0 0 0 84727000 85243000 76934000 2786600 0 0 17148 388 16613 318509;318510;318511;318512;318513;318514;318515;318516;318517;318518;318519;318520;318521;318522;318523;318524;318525;318526;318527 194796;194797;194798;194799;194800;194801;194802;194803;194804;194805;194806;194807;194808;194809;194810;194811;194812 194796 17 QSPFSFVLSFNPADVQPNAR Unmodified 2220.0964 0.096366586 1931 P77717 ybaY Uncharacterized lipoprotein YbaY yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 1 1 54.904 53.498 2;3 3.3624E-07 19619 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 103.41 98.608 97567000 5197800 14081000 10295000 17324000 15727000 17400000 0 4097300 0 0 0 0 0 0 1352400 0 0 0 4798400 5070200 0 2224100 0 0 17149 1931 16614 318528;318529;318530;318531;318532;318533;318534;318535;318536;318537;318538;318539;318540;318541 194813;194814;194815;194816 194813 4 QSPLALWQAHYVK Unmodified 1539.8198 0.8197978 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.492 33.935 3 0.00041246 16265 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 50.467 48.228 167250000 20691000 19419000 15100000 0 0 0 14719000 11405000 11703000 0 0 0 12987000 10291000 8780100 0 0 0 13513000 14018000 14628000 0 0 0 17150 137 16615 318542;318543;318544;318545;318546;318547;318548;318549;318550;318551;318552;318553 194817;194818;194819;194820;194821 194818 5 QSPNTMSDMAAFEK Unmodified 1555.6647 0.66467864 661 P0ABJ1 cyoA Cytochrome bo(3) ubiquinol oxidase subunit 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.767 28.422 2 6.2778E-08 12648 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.78 135.89 693340000 27750000 22503000 24989000 8629700 8805700 9130300 30379000 32836000 31981000 17142000 16386000 16652000 45124000 43167000 37919000 10462000 3463600 6018000 77662000 75078000 80628000 22690000 21010000 22930000 17151 661 16616 318554;318555;318556;318557;318558;318559;318560;318561;318562;318563;318564;318565;318566;318567;318568;318569;318570;318571;318572;318573;318574;318575;318576;318577 194822;194823;194824;194825;194826;194827;194828;194829;194830;194831;194832;194833;194834;194835 194834 12 QSPNVFR Unmodified 846.4348 0.43480077 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.819 15.63 2 0.001881 5275 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.15 104.39 250940000 50901000 50965000 43330000 1770300 1877100 0 14670000 16174000 13061000 0 0 0 7889800 5741100 4722300 0 0 0 13911000 12906000 13017000 0 0 0 17152 405 16617 318578;318579;318580;318581;318582;318583;318584;318585;318586;318587;318588;318589;318590;318591 194836;194837;194838 194836 2 QSPSYGR Unmodified 793.37187 0.37186616 23 CON__Q86YZ3 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 10.881 11.108 2 0.0096264 2171 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 81.297 29.84 9428000 0 0 0 0 0 0 0 0 0 0 6104400 0 0 0 0 0 0 0 0 0 0 0 0 3323500 + 17153 23 16618 318592;318593;318594;318595 194839;194840;194841 194841 3 QSSEQNLSVPVALEAASSIAESAAQSTITMQAR Unmodified 3374.6624 0.66237704 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.524 54.029 3 1.7371E-45 25856 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 225.65 219.81 236180000 0 0 0 0 0 0 29684000 28220000 23863000 0 0 0 31165000 31669000 30325000 0 0 0 21412000 18628000 21220000 0 0 0 17154 1805 16619 318596;318597;318598;318599;318600;318601;318602;318603;318604 194842;194843 194842 2 QSSLMVESLVQK Unmodified 1347.7068 0.70680145 903 P0AF12 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 34.519 33.02 2;3 1.9758E-08 15642 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 169.99 121.2 1599300000 143300000 151820000 137270000 0 0 890660 129540000 122020000 112260000 0 0 0 135890000 126230000 122150000 0 0 0 130460000 134180000 153320000 0 0 0 17155 903 16620 318605;318606;318607;318608;318609;318610;318611;318612;318613;318614;318615;318616;318617;318618 194844;194845;194846;194847;194848;194849;194850;194851;194852;194853;194854 194850 10 QSSMFDDHPASAER Unmodified 1576.6576 0.65761943 1277 P25894 loiP Metalloprotease LoiP yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 15.362 15.875 2 0.0004839 5444 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 73.466 66.613 12724000 3355400 0 0 0 0 0 0 0 0 0 2414700 0 0 0 0 0 0 0 2779800 0 2055500 2118000 0 0 17156 1277 16621 318619;318620;318621;318622;318623 194855 194855 1 QSTAAAAEIKR Unmodified 1144.62 0.62003536 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 10.799 11.886 3 0.033739 2257 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 34.386 28.922 51124000 0 0 0 17239000 14669000 19216000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17157 76 16622 318624;318625;318626 194856;194857 194857 2 QSVDAMLMTGDSYDCGK Unmodified 1876.7641 0.76413469 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.194 34.638 2 1.8082E-39 16081 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 252.04 251.63 105710000 6772800 7332300 8381100 0 0 0 7921900 7636100 5996600 0 0 0 9281500 10610000 9060700 0 0 0 9531600 11058000 12129000 0 0 0 17158 583 16623 318627;318628;318629;318630;318631;318632;318633;318634;318635;318636;318637;318638 194858;194859;194860;194861;194862;194863;194864 194862 7 QSVDQPVQTGYK Unmodified 1348.6623 0.6622941 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.415 15.963 2 1.4819E-30 4355 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 250.96 244.3 3361900000 130780000 110230000 100880000 27461000 27681000 24950000 359160000 2124700 299370000 91738000 79245000 68226000 312430000 314230000 324080000 21545000 14077000 14788000 0 423140000 444170000 57666000 55677000 58240000 17159 645 16624 318639;318640;318641;318642;318643;318644;318645;318646;318647;318648;318649;318650;318651;318652;318653;318654;318655;318656;318657;318658;318659;318660;318661 194865;194866;194867;194868;194869;194870;194871;194872;194873;194874;194875;194876;194877;194878;194879;194880;194881;194882;194883;194884;194885 194870 21 QSVDTLLTLIHQK Unmodified 1494.8406 0.84059282 1130 P16690 phnN Ribose 1,5-bisphosphate phosphokinase PhnN yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 41.304 39.667 3 0.15803 19192 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 17.8 15.661 242980000 224350000 0 0 0 0 0 0 0 0 0 0 0 1442400 1089600 0 0 0 0 5095200 5007900 4899200 0 1100700 0 17160 1130 16625 318662;318663;318664;318665;318666;318667;318668 194886 194886 1 QSVEADINGLRR Unmodified 1356.711 0.71097563 13;7;4 CON__P13645;CON__P02535-1;CON__ENSEMBL:ENSP00000377550;CON__P13646-1 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 20.804 20.714 2;3 8.6599E-17 6416 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 212.21 172.91 284860000 0 0 0 27066000 25934000 23155000 0 0 0 21191000 19056000 19303000 0 0 0 0 0 0 0 0 0 53582000 44250000 51321000 + 17161 13;7;4 16626 318669;318670;318671;318672;318673;318674;318675;318676;318677;318678;318679;318680;318681;318682;318683;318684;318685;318686 194887;194888;194889;194890;194891;194892;194893;194894;194895;194896;194897;194898;194899;194900;194901;194902 194896 16 QSVLEMSDVNER Unmodified 1405.6507 0.65074314 536 P0A9M0 lon Lon protease yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.013 25.91 2 1.3949E-30 11972 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 252.16 251.8 603950000 44202000 47461000 42703000 0 0 0 41255000 42679000 45666000 5200000 4204500 4512500 51880000 41910000 46834000 10323000 6791100 5396300 54394000 55679000 49417000 0 0 3439700 17162 536 16627 318687;318688;318689;318690;318691;318692;318693;318694;318695;318696;318697;318698;318699;318700;318701;318702;318703;318704;318705 194903;194904;194905;194906;194907;194908;194909;194910;194911;194912;194913;194914 194909 12 QSWHSYIPYTDR Unmodified 1551.7106 0.71064128 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 28.979 27.657 2;3 9.2127E-17 12713 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 207.67 192.52 566040000 31597000 32096000 23209000 1173200 1134300 1121200 43744000 57318000 51600000 0 0 0 37868000 40117000 34469000 0 0 0 64332000 70755000 67987000 1215500 3341300 2959300 17163 1426 16628 318706;318707;318708;318709;318710;318711;318712;318713;318714;318715;318716;318717;318718;318719;318720;318721;318722;318723;318724;318725;318726;318727;318728;318729;318730;318731;318732;318733;318734;318735 194915;194916;194917;194918;194919;194920;194921;194922;194923;194924;194925 194923 11 QSWHSYIPYTDRIEYLGGCVNEMPYVLAVEK Unmodified 3716.7643 0.76433969 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 51.396 50.304 4 4.1903E-18 20463 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 151.41 148.57 97616000 0 0 0 4860500 4582000 3910600 0 0 0 16228000 12887000 16314000 0 0 0 0 5167100 5784500 0 0 0 0 11720000 16162000 17164 1426 16629 318736;318737;318738;318739;318740;318741;318742;318743;318744;318745 194926;194927;194928;194929;194930;194931 194927 6 QTAAVAAK Unmodified 758.42865 0.42865276 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 8.27 9.0709 2 0.069417 1987 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 55.676 21.938 40871000 5099800 10021000 12616000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3941500 3908400 5285700 0 0 0 17165 1850 16630 318746;318747;318748;318749;318750;318751 194932;194933 194932 2 QTAFMDSMK Unmodified 1057.4573 0.45725205 1456 P37095 pepB Peptidase B yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.845 22.315 2 0.0011019 9357 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.143 92.312 833960000 61401000 60997000 62229000 0 0 0 57538000 66493000 72252000 0 0 0 88658000 80591000 87764000 0 0 0 65231000 67932000 62872000 0 0 0 17166 1456 16631 318752;318753;318754;318755;318756;318757;318758;318759;318760;318761;318762;318763 194934;194935;194936;194937;194938;194939;194940;194941 194937 7 QTAFSQYDRPQAR Unmodified 1566.7539 0.75390307 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 15.313 15.912 2;3 8.847E-50 5004 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 297.2 283.43 3885600000 229220000 222720000 211630000 108660000 105830000 92972000 517750000 480000000 446450000 84249000 73159000 72837000 140080000 158260000 184200000 8872700 6460500 9513800 183390000 159550000 141350000 95207000 73674000 79547000 17167 548 16632 318764;318765;318766;318767;318768;318769;318770;318771;318772;318773;318774;318775;318776;318777;318778;318779;318780;318781;318782;318783;318784;318785;318786;318787;318788;318789;318790;318791;318792;318793;318794;318795;318796;318797;318798;318799;318800;318801;318802;318803;318804;318805;318806;318807;318808 194942;194943;194944;194945;194946;194947;194948;194949;194950;194951;194952;194953;194954;194955;194956;194957;194958;194959;194960;194961;194962;194963;194964;194965;194966;194967;194968;194969;194970;194971;194972;194973;194974;194975;194976;194977;194978;194979;194980 194979 39 QTAGEILADGK Unmodified 1101.5666 0.5666028 1425 P33593 nikD Nickel import ATP-binding protein NikD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.304 21.633 2 0.12801 8764 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 38.086 29.323 115120000 9199200 10376000 5324200 0 0 0 12538000 17875000 17608000 0 0 0 0 2763600 2339000 0 0 0 14015000 12822000 10257000 0 0 0 17168 1425 16633 318809;318810;318811;318812;318813;318814;318815;318816;318817;318818;318819 194981 194981 1 QTAGEILADGKPVSPCALR Unmodified 1982.0255 0.025509829 1425 P33593 nikD Nickel import ATP-binding protein NikD yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.069 27.575 3 0.10106 10679 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 28.891 25.503 37926000 0 0 0 0 0 0 0 2157700 1665800 13491000 4304600 4889000 2584800 4193600 0 0 0 802170 0 0 3837400 0 0 0 17169 1425 16634 318820;318821;318822;318823;318824;318825;318826;318827;318828 194982;194983 194982 2 QTAPAGIFER Unmodified 1088.5615 0.56145784 1677 P64488 yeaR Uncharacterized protein YeaR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 24.947 23.976 2 0.0048382 10443 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.985 42.051 37991000 10542000 9633400 8777500 0 0 0 3323200 0 0 0 0 0 0 0 0 0 0 0 3089200 0 2625800 0 0 0 17170 1677 16635 318829;318830;318831;318832;318833;318834 194984;194985;194986 194986 0 QTATFIEQAK Unmodified 1135.5873 0.58733824 1037 P0C0K3 rdoA Protein RdoA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.889 19.454 2 0.0005415 7353 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 96.331 90.018 87819000 7113700 8134500 7117900 0 0 0 6841400 6625700 6887900 0 0 0 6756500 6382900 7043400 0 0 0 7920400 8813700 8181300 0 0 0 17171 1037 16636 318835;318836;318837;318838;318839;318840;318841;318842;318843;318844;318845;318846 194987;194988;194989;194990;194991;194992;194993;194994;194995;194996;194997 194991 10 QTCFINMATGGFGTR Unmodified 1659.7497 0.74974567 1857 P76407 yegS Lipid kinase YegS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 41.011 39.419 2 1.9725E-11 19181 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.45 136.6 23715000 0 0 10041000 0 0 0 0 0 6799600 0 0 0 0 2161800 1621500 0 0 0 0 0 3091300 0 0 0 17172 1857 16637 318847;318848;318849;318850;318851;318852;318853 194998;194999;195000 194999 3 QTDELTGLSSLVVLDSAER Unmodified 2032.0324 0.032428925 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 2 2 2 3 3 2 2 2 2 8 8 8 2 2 2 5 4 5 53.021 52.121 2;3 1.5055E-127 20142 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 399.27 393.99 22532000000 158420000 127640000 117050000 7947100 13201000 9492500 106160000 95294000 102120000 1560100000 1397800000 1376900000 127800000 123270000 116660000 4096000000 3449100000 3813600000 175540000 177010000 181610000 1826900000 1765700000 1606600000 17173 458 16638 318854;318855;318856;318857;318858;318859;318860;318861;318862;318863;318864;318865;318866;318867;318868;318869;318870;318871;318872;318873;318874;318875;318876;318877;318878;318879;318880;318881;318882;318883;318884;318885;318886;318887;318888;318889;318890;318891;318892;318893;318894;318895;318896;318897;318898;318899;318900;318901;318902;318903;318904;318905;318906;318907;318908;318909;318910;318911;318912;318913;318914;318915;318916;318917;318918;318919;318920;318921;318922;318923;318924;318925;318926 195001;195002;195003;195004;195005;195006;195007;195008;195009;195010;195011;195012;195013;195014;195015;195016;195017;195018;195019;195020;195021;195022;195023;195024;195025;195026;195027;195028;195029;195030;195031;195032;195033;195034;195035;195036;195037;195038;195039;195040;195041;195042;195043;195044;195045;195046;195047;195048;195049;195050;195051;195052;195053;195054;195055;195056;195057;195058;195059;195060;195061;195062;195063;195064 195001 62 QTDLVEAMAK Unmodified 1104.5485 0.5485099 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 25.66 24.568 2 0.00021249 10623 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 120.12 95.964 2202800000 190500000 167010000 0 0 0 0 201760000 216100000 187440000 0 0 0 202790000 186390000 183940000 0 0 0 233110000 213740000 220070000 0 0 0 17174 299 16639 318927;318928;318929;318930;318931;318932;318933;318934;318935;318936;318937 195065;195066;195067;195068;195069;195070;195071;195072 195071 8 QTEDYITGR Unmodified 1081.504 0.50400254 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.392 16.944 2 9.6162E-08 5935 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 184.38 171.34 1310000000 6183800 4498400 3103700 1728500 1365700 1793000 102270000 110100000 101640000 20495000 32652000 29469000 109890000 105710000 83013000 19465000 14249000 13053000 153560000 158620000 164250000 27566000 21021000 24319000 17175 594 16640 318938;318939;318940;318941;318942;318943;318944;318945;318946;318947;318948;318949;318950;318951;318952;318953;318954;318955;318956;318957;318958;318959;318960;318961 195073;195074;195075;195076;195077;195078;195079;195080;195081;195082;195083;195084;195085;195086;195087;195088;195089;195090 195085 18 QTESHAVK Unmodified 898.45084 0.45084476 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4.6966 5.5786 2 0.00063868 835 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 129.47 93.28 4276600000 250680000 206390000 182950000 0 841320 880890 232240000 245100000 262780000 0 0 0 466940000 456430000 474520000 0 0 0 517570000 512000000 467250000 0 0 0 17176 1079 16641 318962;318963;318964;318965;318966;318967;318968;318969;318970;318971;318972;318973;318974;318975 195091;195092;195093;195094;195095;195096;195097;195098;195099;195100;195101;195102;195103 195101 13 QTFINFLHNLPFYGR Unmodified 1865.9577 0.95768826 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 1 1 2 1 2 1 2 2 1 53.234 51.813 2;3 3.0612E-06 25328 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.941 97.604 424870000 31503000 31318000 30564000 0 0 0 29227000 30593000 30699000 0 4146300 4419900 34888000 29053000 32392000 0 0 0 37590000 34665000 60706000 3102800 0 0 17177 1145 16642 318976;318977;318978;318979;318980;318981;318982;318983;318984;318985;318986;318987;318988;318989;318990;318991;318992;318993;318994;318995 195104;195105;195106;195107;195108;195109;195110;195111;195112;195113;195114;195115;195116;195117 195109 13 QTFNTAIAAIMELMNK Unmodified 1794.9008 0.90082659 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 1 2 2 2 2 2 2 55.644 54.195 2;3 1.1266E-18 25948 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 147.07 142.75 1689300000 140700000 153580000 153600000 1540100 894350 3440900 109250000 89972000 114850000 0 0 808360 127060000 136010000 147980000 0 0 0 179870000 159480000 170210000 0 0 0 17178 170 16643 318996;318997;318998;318999;319000;319001;319002;319003;319004;319005;319006;319007;319008;319009;319010;319011;319012;319013;319014;319015;319016;319017;319018;319019;319020;319021;319022;319023;319024 195118;195119;195120;195121;195122;195123;195124;195125;195126;195127;195128;195129;195130;195131;195132;195133;195134;195135 195131 18 QTFQFHGILK Unmodified 1217.6557 0.65569258 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 1 2 2 2 2 2 2 2 1 1 28.867 27.577 2;3 0.003185 12700 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.709 77.331 1000400000 102240000 94889000 84338000 1223100 1346900 1364800 92600000 19439000 73188000 0 0 0 66104000 61857000 59195000 0 0 0 117200000 110540000 110150000 2631400 0 2098000 17179 1143 16644 319025;319026;319027;319028;319029;319030;319031;319032;319033;319034;319035;319036;319037;319038;319039;319040;319041;319042;319043;319044;319045;319046;319047;319048;319049;319050;319051;319052;319053 195136;195137;195138;195139;195140;195141;195142;195143;195144;195145;195146;195147;195148;195149;195150 195144 14 QTGCAGFGYVLDSVSEPDKDDLLFEHDGAK Unmodified 3269.4823 0.48228741 1924 P77667 sufA Protein SufA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.312 45.778 4 8.1679E-42 22673 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 214.3 214.29 545990000 59534000 51666000 53658000 3012800 2906500 3084200 75769000 77266000 58932000 5833400 6159100 4258600 20766000 18870000 20411000 0 0 0 26262000 25026000 25399000 2102900 2818900 2252200 17180 1924 16645 319054;319055;319056;319057;319058;319059;319060;319061;319062;319063;319064;319065;319066;319067;319068;319069;319070;319071;319072;319073;319074 195151;195152;195153;195154;195155;195156;195157;195158;195159;195160;195161 195152 11 QTGDLYAVLK Unmodified 1106.5972 0.59717465 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 32.84 31.363 2 0.0054925 14916 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 66.27 49.73 134300000 16817000 12987000 9424600 851960 0 0 30145000 26493000 24278000 0 0 0 4701800 0 4065300 0 0 0 4537300 0 0 0 0 0 17181 1440 16646 319075;319076;319077;319078;319079;319080;319081;319082;319083;319084 195162 195162 1 QTGETLK Unmodified 775.40758 0.40758296 82 P03817 mioC Protein MioC yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.088 10.922 2 0.13308 2447 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 47.849 4.8484 252930000 14895000 0 13370000 0 0 0 168250000 0 0 0 0 0 7527200 8326600 6866900 0 0 0 18621000 15072000 0 0 0 0 17182 82 16647 319085;319086;319087;319088;319089;319090;319091;319092 195163 195163 1 QTGFLTVMDLK Unmodified 1251.6533 0.65330932 1534 P39384 yjiM Uncharacterized protein YjiM yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 45.664 44.175 2 0.00019199 21865 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.52 91.753 90825000 3494200 0 0 0 0 0 18528000 19753000 19697000 0 0 0 7499600 8704200 9197600 0 0 0 0 3951900 0 0 0 0 17183 1534 16648 319093;319094;319095;319096;319097;319098;319099;319100 195164;195165;195166 195166 3 QTGRPHGFLR Unmodified 1167.6261 0.62612379 988 P0AG59 rpsN 30S ribosomal protein S14 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 1 1 2 2 2 2 2 1 2 1 1 2 2 2 2 2 2 11.852 12.359 2;3 7.7037E-19 3049 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 211.85 183.68 1560100000 296010000 217340000 193200000 14397000 6882900 7977100 0 0 0 45622000 51485000 46304000 98330000 78065000 0 12843000 8497800 7896800 120980000 117790000 139950000 29992000 30390000 36137000 17184 988 16649 319101;319102;319103;319104;319105;319106;319107;319108;319109;319110;319111;319112;319113;319114;319115;319116;319117;319118;319119;319120;319121;319122;319123;319124;319125;319126;319127;319128;319129;319130;319131;319132;319133;319134;319135;319136;319137;319138;319139;319140 195167;195168;195169;195170;195171;195172;195173;195174;195175;195176;195177;195178;195179;195180;195181;195182;195183;195184;195185;195186;195187;195188;195189;195190;195191;195192;195193 195191 27 QTHQTPVIMLTAR Unmodified 1494.7977 0.79768214 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 23.84 23.038 2;3 8.3704E-13 10098 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.23 149.43 922990000 158760000 146270000 135080000 8278600 7507700 8207800 33578000 40461000 31754000 0 0 0 29378000 35064000 38160000 35287000 21339000 23130000 57743000 53583000 59407000 0 0 0 17185 841 16650 319141;319142;319143;319144;319145;319146;319147;319148;319149;319150;319151;319152;319153;319154;319155;319156;319157;319158;319159;319160;319161;319162;319163;319164;319165;319166;319167;319168;319169;319170;319171;319172;319173;319174 195194;195195;195196;195197;195198;195199;195200;195201;195202;195203;195204;195205;195206;195207;195208;195209;195210;195211;195212;195213;195214;195215;195216;195217;195218 195201 25 QTIETIATLVDMAEQATGQR Unmodified 2175.0841 0.08414692 1231 P23917 mak Fructokinase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.359 53.886 3 1.442E-30 26858 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 219.95 215.92 310870000 37098000 34214000 33262000 0 0 0 21937000 27326000 26617000 0 0 0 26507000 19905000 17806000 0 0 0 23649000 21228000 21322000 0 0 0 17186 1231 16651 319175;319176;319177;319178;319179;319180;319181;319182;319183;319184;319185;319186 195219;195220;195221 195219 3 QTIQVIVGAK Unmodified 1055.6339 0.63389451 210 P09323 nagE PTS system N-acetylglucosamine-specific EIICBA component;N-acetylglucosamine permease IIC component;N-acetylglucosamine-specific phosphotransferase enzyme IIB component;N-acetylglucosamine-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.039 23.946 2 0.0004588 8724 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 101.72 87.564 229170000 8172500 6002800 4497500 0 4966200 5201000 17521000 21415000 21640000 14169000 14263000 13464000 9567100 10789000 11175000 0 1181100 0 14884000 15097000 14793000 7999400 6082500 6294300 17187 210 16652 319187;319188;319189;319190;319191;319192;319193;319194;319195;319196;319197;319198;319199;319200;319201;319202;319203;319204;319205;319206;319207 195222;195223;195224;195225;195226;195227;195228 195223 6 QTIVVDYSAPNVAK Unmodified 1503.7933 0.79330827 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.111 28.755 2 7.2762E-15 13667 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 197.73 191.63 1129500000 83143000 82243000 71863000 0 0 0 91942000 80797000 80939000 0 0 0 89377000 91739000 81460000 0 0 0 114340000 128510000 133180000 0 0 0 17188 1073 16653 319208;319209;319210;319211;319212;319213;319214;319215;319216;319217;319218;319219 195229;195230;195231;195232;195233;195234;195235;195236;195237;195238;195239;195240 195230 12 QTLAEVIEPR Unmodified 1154.6295 0.62953741 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.697 29.196 2 0.0037296 13076 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.349 47.319 231590000 17640000 14455000 14941000 0 0 0 29483000 28679000 27007000 0 0 3742200 14955000 13262000 11332000 0 0 0 25644000 0 22700000 2065600 3557300 2131200 17189 656 16654 319220;319221;319222;319223;319224;319225;319226;319227;319228;319229;319230;319231;319232;319233;319234 195241;195242;195243;195244;195245;195246 195245 4 QTLCNALK Unmodified 946.4906 0.49060109 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.672 16.456 2 0.025091 5675 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 65.038 42.934 231220000 12137000 10963000 9820100 697890 541340 541110 37725000 37310000 34163000 0 1743000 0 15877000 14933000 13472000 0 0 0 0 21936000 19358000 0 0 0 17190 1916 16655 319235;319236;319237;319238;319239;319240;319241;319242;319243;319244;319245;319246;319247;319248;319249 195247 195247 1 QTLGHIL Unmodified 780.44939 0.4493882 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.313 24.274 2 0.025077 10811 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 72.021 57.356 601770000 32705000 33335000 32584000 0 0 0 74221000 82451000 71130000 0 0 0 51397000 52959000 50167000 0 0 0 44026000 39900000 36896000 0 0 0 17191 285 16656 319250;319251;319252;319253;319254;319255;319256;319257;319258;319259;319260;319261 195248;195249;195250;195251;195252;195253;195254;195255;195256;195257 195252 10 QTLGQHDFSAGEGLYTHMK Unmodified 2118.9793 0.97928792 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 25.734 24.609 3;4 0.0025767 11355 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 56.553 53.455 1777500000 195730000 172990000 185090000 2062200 2715500 2179800 320950000 304930000 294630000 4115000 6736900 5289900 47499000 42229000 37313000 0 1097700 0 51795000 50299000 49865000 0 0 0 17192 64 16657 319262;319263;319264;319265;319266;319267;319268;319269;319270;319271;319272;319273;319274;319275;319276;319277;319278;319279;319280;319281;319282;319283;319284;319285;319286;319287;319288;319289;319290;319291;319292 195258;195259;195260;195261;195262;195263;195264;195265;195266;195267;195268;195269;195270 195259 13 QTLHQVEPLR Unmodified 1219.6673 0.6673199 1883 P77181 paaY Phenylacetic acid degradation protein PaaY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 14.237 15.013 2 0.00043081 4962 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 103.55 97.242 32156000 8220300 8173100 4688100 0 0 0 4986800 0 3134500 0 0 0 0 2953100 0 0 0 0 0 0 0 0 0 0 17193 1883 16658 319293;319294;319295;319296;319297;319298 195271;195272;195273;195274 195272 4 QTLIDHLNQK Unmodified 1208.6513 0.65133548 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 18.139 18.538 2;3 2.3763E-31 6895 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 292.78 281.41 2168300000 165670000 154870000 145580000 1366100 1353500 1767700 205470000 56302000 53386000 14680000 12565000 8669800 229010000 222930000 207140000 16961000 20884000 22380000 213690000 211960000 201630000 0 0 0 17194 297 16659 319299;319300;319301;319302;319303;319304;319305;319306;319307;319308;319309;319310;319311;319312;319313;319314;319315;319316;319317;319318;319319;319320;319321;319322;319323;319324;319325;319326;319327;319328;319329;319330;319331;319332;319333;319334;319335;319336;319337;319338 195275;195276;195277;195278;195279;195280;195281;195282;195283;195284;195285;195286;195287;195288;195289;195290;195291;195292;195293;195294;195295;195296;195297;195298;195299;195300 195288 26 QTLLGNSLVVVAPK Unmodified 1437.8555 0.8555146 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 41.641 40.102 2 7.2207E-08 19532 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.25 130.32 292850000 109840000 96243000 86771000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17195 1464 16660 319339;319340;319341 195301;195302;195303 195302 3 QTLLSDEDAELVEIVK Unmodified 1800.9357 0.93567499 1036 P0C079 relB Antitoxin RelB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 50.05 48.624 2 1.3403E-06 23921 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.66 75.724 144620000 16559000 14396000 13849000 0 0 0 12217000 15498000 11834000 0 0 0 10366000 7331900 0 0 0 0 15554000 15835000 11176000 0 0 0 17196 1036 16661 319342;319343;319344;319345;319346;319347;319348;319349;319350;319351;319352 195304;195305 195304 2 QTLQAQLTR Unmodified 1057.588 0.58800695 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.879 18.317 2 4.1645E-10 5296 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 203.02 178.24 1385900000 86533000 76419000 78066000 23510000 21097000 21381000 124300000 129010000 115070000 34064000 24183000 28312000 74464000 71995000 83570000 5130400 3835400 3398600 117140000 104450000 112450000 14656000 16277000 16611000 17197 1962 16662 319353;319354;319355;319356;319357;319358;319359;319360;319361;319362;319363;319364;319365;319366;319367;319368;319369;319370;319371;319372;319373;319374;319375;319376;319377;319378 195306;195307;195308;195309;195310;195311;195312;195313;195314;195315;195316;195317;195318;195319;195320;195321;195322;195323;195324;195325;195326;195327;195328;195329 195317 24 QTMAMGCWSEQELVGEQGHWQAK Unmodified 2690.1676 0.16757575 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.783 37.109 3 1.4328E-15 17394 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 151.64 151.64 336040000 19328000 17081000 15245000 0 0 0 26039000 20333000 25954000 0 0 0 37545000 31415000 34341000 0 0 0 33617000 35861000 39280000 0 0 0 17198 1500 16663 319379;319380;319381;319382;319383;319384;319385;319386;319387;319388;319389;319390 195330;195331;195332 195330 3 QTMEIHHTK Unmodified 1123.5444 0.54442757 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 1 2 2 2 2 2 2 8.3703 9.1906 2;3 9.9504E-05 1188 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 136.27 120.63 1311700000 84670000 91286000 82656000 0 0 0 85599000 98399000 79416000 0 0 0 45575000 31112000 45661000 0 0 0 216870000 241570000 208920000 0 0 0 17199 28 16664 319391;319392;319393;319394;319395;319396;319397;319398;319399;319400;319401;319402;319403;319404;319405;319406;319407;319408;319409;319410;319411;319412;319413 195333;195334;195335;195336;195337;195338;195339;195340;195341;195342;195343;195344;195345;195346;195347;195348;195349;195350;195351;195352;195353;195354;195355;195356;195357;195358;195359;195360;195361;195362 195333 30 QTMEIHHTK Oxidation (M) 1139.5393 0.53934219 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 1 1 1 1 2 2 2 3 2 6.9311 7.7559 2;3 0.0015266 1303 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 90.657 84.553 104000000 10897000 12252000 5563600 0 0 0 6754100 7386900 5931200 0 0 0 2332100 2532200 0 0 0 0 11737000 24335000 14283000 0 0 0 17200 28 16664 319414;319415;319416;319417;319418;319419;319420;319421;319422;319423;319424;319425;319426;319427;319428;319429;319430;319431;319432;319433 195363;195364;195365;195366;195367;195368;195369;195370;195371;195372;195373 195370 12 11 QTMLINEK Unmodified 975.50592 0.5059168 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.622 18.152 2 0.00095078 6612 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 116.25 79.23 1070800000 96480000 101690000 95307000 0 1482000 1703300 84643000 87075000 92344000 2855700 2183900 0 65830000 79090000 69579000 0 0 0 94709000 100790000 92703000 1092100 0 1238900 17201 451 16665 319434;319435;319436;319437;319438;319439;319440;319441;319442;319443;319444;319445;319446;319447;319448;319449;319450;319451 195374;195375;195376;195377;195378;195379;195380;195381;195382;195383 195377 10 QTPEIGYMPGHLTWYFGEELK Unmodified 2495.1831 0.18313268 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.264 49.967 3 9.0865E-07 24532 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.572 90.428 601890000 170430000 172130000 152770000 0 0 0 34683000 30430000 30917000 0 0 0 3843500 6693100 0 0 0 0 0 0 0 0 0 0 17202 1373 16666 319452;319453;319454;319455;319456;319457;319458;319459 195384;195385;195386 195384 3 QTPEIGYMPGHLTWYFGEELKK Unmodified 2623.2781 0.2780957 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.713 44.257 3;4 1.0246E-06 21926 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.199 91.695 3574900000 996090000 944260000 828610000 0 0 0 202750000 174880000 163250000 0 0 0 36024000 32587000 33984000 0 0 0 45393000 56852000 60212000 0 0 0 17203 1373 16667 319460;319461;319462;319463;319464;319465;319466;319467;319468;319469;319470;319471;319472;319473;319474;319475;319476;319477;319478;319479;319480;319481;319482;319483 195387;195388;195389;195390;195391;195392;195393;195394;195395;195396;195397;195398;195399;195400;195401;195402;195403;195404;195405 195392 19 QTQDFAAR Unmodified 935.44609 0.44609374 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.024 12.825 2 0.00011651 3396 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 157.86 137.58 495000000 23723000 24546000 24616000 0 363460 268730 44033000 42553000 45892000 0 844230 1253300 47523000 34171000 38561000 0 0 0 52142000 60127000 54387000 0 0 0 17204 294 16668 319484;319485;319486;319487;319488;319489;319490;319491;319492;319493;319494;319495;319496;319497;319498;319499 195406;195407;195408;195409;195410;195411;195412;195413;195414 195414 9 QTQINLLSSMAI Unmodified 1317.6962 0.69623677 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 55.072 53.595 2 1.2699E-11 26685 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.65 169.71 212000000 50115000 54674000 50602000 0 0 0 0 19642000 18450000 0 0 0 0 0 5313500 0 0 0 0 5546300 7654600 0 0 0 17205 703 16669 319500;319501;319502;319503;319504;319505;319506;319507 195415;195416 195415 2 QTTDEYINTILPPLTK Unmodified 1845.9724 0.97239485 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.928 47.504 2 2.4816E-18 23446 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 227.56 217.08 76893000 0 0 0 0 0 0 16315000 19318000 17131000 0 0 0 7798500 9095600 7233800 0 0 0 0 0 0 0 0 0 17206 520 16670 319508;319509;319510;319511;319512;319513 195417;195418;195419;195420;195421;195422 195418 6 QTTFNDMIK Unmodified 1096.5223 0.52229515 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.814 24.742 2 0.0011011 11364 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 93.162 75.777 2746100000 78856000 71675000 68432000 0 0 0 476990000 494870000 454450000 0 0 0 107260000 92471000 79427000 0 0 0 283280000 281950000 256420000 0 0 0 17207 669 16671 319514;319515;319516;319517;319518;319519;319520;319521;319522;319523;319524;319525 195423;195424;195425;195426;195427;195428;195429;195430;195431;195432;195433 195424 11 QTTFNDMIKIALESVLLGDKE Unmodified 2364.2247 0.22466315 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 55.848 54.405 3 3.6083E-10 25882 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 118.16 115.31 751650000 48108000 53158000 46949000 0 0 0 33504000 0 0 0 0 0 142050000 224840000 60569000 0 0 0 50560000 47557000 44361000 0 0 0 17208 669 16672 319526;319527;319528;319529;319530;319531;319532;319533;319534;319535 195434;195435;195436;195437;195438;195439;195440;195441;195442;195443 195442 10 QTTLLLK Unmodified 815.51165 0.5116541 1268 P25718 malS Alpha-amylase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 22.032 22.076 2 0.13308 9122 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 47.849 29.47 31944000 0 0 0 0 0 0 2826500 0 0 0 0 0 4373600 0 3875400 0 0 0 8314100 6133100 6421300 0 0 0 17209 1268 16673 319536;319537;319538;319539;319540;319541 195444;195445 195444 2 QTTTYGFSEDADVR Unmodified 1588.7005 0.7005301 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.04 24.892 2 4.0359E-06 11221 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 133.05 127.08 97612000 9270500 7595800 8412900 0 0 0 7604100 8063700 7737200 0 0 0 6472100 6511400 7625800 0 0 0 9149500 8690500 10479000 0 0 0 17210 1145 16674 319542;319543;319544;319545;319546;319547;319548;319549;319550;319551;319552;319553 195446;195447;195448;195449;195450;195451;195452;195453 195448 8 QTVAAYIAK Unmodified 963.53893 0.53893149 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.711 20.119 2 0.0059988 7623 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 72.485 52.848 605830000 98276000 89459000 90734000 6823000 6422700 5892900 71235000 75387000 62322000 653160 0 0 14271000 13175000 12936000 0 0 0 18704000 22106000 17430000 0 0 0 17211 147 16675 319554;319555;319556;319557;319558;319559;319560;319561;319562;319563;319564;319565;319566;319567;319568;319569 195454;195455;195456;195457;195458;195459;195460 195457 7 QTVDEALK Unmodified 902.47091 0.4709115 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.729 14.595 2 0.0027606 4638 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 97.798 49.95 2304800000 34892000 37940000 32953000 0 0 0 211050000 229030000 242060000 0 0 0 219310000 201370000 189210000 0 0 0 312320000 307850000 286810000 0 0 0 17212 895 16676 319570;319571;319572;319573;319574;319575;319576;319577;319578;319579;319580;319581 195461;195462;195463;195464;195465;195466;195467;195468;195469;195470 195462 10 QTVDEALKDAQTR Unmodified 1473.7423 0.74233534 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 2 18.612 19.091 2;3 3.672E-24 7272 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 285.83 252.6 4218800000 36423000 34555000 51750000 4543800 3950800 3692700 417270000 398350000 378400000 0 1216700 1301000 405000000 361500000 353600000 0 0 0 582540000 608870000 557500000 6202000 5981500 6178600 17213 895 16677 319582;319583;319584;319585;319586;319587;319588;319589;319590;319591;319592;319593;319594;319595;319596;319597;319598;319599;319600;319601;319602;319603;319604;319605;319606;319607;319608;319609;319610;319611;319612;319613;319614;319615;319616 195471;195472;195473;195474;195475;195476;195477;195478;195479;195480;195481;195482;195483;195484;195485;195486;195487;195488;195489 195476 19 QTVYAFLGDGEMDEPESK Unmodified 2014.883 0.8829875 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 5 5 6 2 2 3 2 2 3 3 3 2 1 1 1 2 2 2 5 5 5 44.61 42.95 2;3 1.0182E-56 16078 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 293.6 293.22 13185000000 231470000 190800000 181140000 2042200000 2033600000 1927500000 235710000 210380000 194640000 142020000 131390000 112670000 150070000 133070000 154560000 50991000 37416000 32475000 259330000 266160000 245650000 1426400000 1378800000 1417000000 17214 939 16678 319617;319618;319619;319620;319621;319622;319623;319624;319625;319626;319627;319628;319629;319630;319631;319632;319633;319634;319635;319636;319637;319638;319639;319640;319641;319642;319643;319644;319645;319646;319647;319648;319649;319650;319651;319652;319653;319654;319655;319656;319657;319658;319659;319660;319661;319662;319663;319664;319665;319666;319667;319668;319669;319670;319671;319672;319673;319674;319675;319676;319677;319678;319679;319680;319681;319682;319683;319684;319685;319686 195490;195491;195492;195493;195494;195495;195496;195497;195498;195499;195500;195501;195502;195503;195504;195505;195506;195507;195508;195509;195510;195511;195512;195513;195514;195515;195516;195517;195518;195519;195520;195521;195522;195523;195524;195525;195526;195527;195528;195529;195530;195531;195532;195533;195534;195535;195536;195537;195538;195539;195540;195541;195542;195543;195544;195545;195546;195547;195548;195549;195550;195551;195552;195553;195554;195555;195556;195557;195558;195559;195560 195514 65 QTVYAFLGDGEMDEPESK Oxidation (M) 2030.8779 0.87790212 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 5 6 6 2 3 1 5 2 3 1 1 1 1 1 4 3 5 39.536 37.549 2;3 1.7986E-17 13250 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 175.28 175.28 711850000 0 2282600 2011300 124010000 115330000 110710000 7307600 9850700 3743300 10687000 4938700 4103500 2042300 2223400 0 0 0 0 4285900 4312300 3452800 104940000 93321000 102300000 17215 939 16678 319687;319688;319689;319690;319691;319692;319693;319694;319695;319696;319697;319698;319699;319700;319701;319702;319703;319704;319705;319706;319707;319708;319709;319710;319711;319712;319713;319714;319715;319716;319717;319718;319719;319720;319721;319722;319723;319724;319725;319726;319727;319728;319729;319730;319731;319732;319733;319734;319735;319736;319737;319738 195561;195562;195563;195564;195565;195566;195567;195568;195569;195570;195571;195572;195573;195574;195575;195576;195577;195578;195579;195580;195581;195582;195583;195584;195585;195586;195587;195588;195589;195590;195591;195592;195593;195594 195592 443 33 QTYCGPIGAEYMHITSTEEK Unmodified 2314.0246 0.024583131 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 33.2 31.716 2;3 2.1382E-30 15080 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 275.76 273.34 1846300000 151310000 173650000 128820000 0 0 606870 75896000 84218000 71646000 0 0 0 129410000 132400000 113730000 0 0 0 238190000 260140000 281720000 0 2651800 1925400 17216 937 16679 319739;319740;319741;319742;319743;319744;319745;319746;319747;319748;319749;319750;319751;319752;319753;319754;319755;319756;319757;319758;319759;319760;319761;319762;319763;319764 195595;195596;195597;195598;195599;195600;195601;195602;195603;195604;195605;195606;195607;195608;195609 195604 15 QTYCGPIGAEYMHITSTEEKR Unmodified 2470.1257 0.12569416 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 1 1 2 2 2 1 2 2 28.497 27.316 3;4 3.1533E-16 12587 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.87 155.34 489080000 49076000 37046000 39823000 2876100 0 4063100 0 6680700 3644400 0 0 0 27468000 31133000 23113000 0 2848100 2936200 72192000 83946000 70479000 9362300 10416000 11980000 17217 937 16680 319765;319766;319767;319768;319769;319770;319771;319772;319773;319774;319775;319776;319777;319778;319779;319780;319781;319782;319783;319784;319785;319786;319787;319788;319789;319790;319791;319792;319793 195610;195611;195612;195613;195614;195615;195616;195617;195618;195619;195620;195621;195622 195616 13 QVAAILHDPEASENDK Unmodified 1735.8377 0.83769228 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 20.091 20.467 2;3 7.5976E-09 8166 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 154.36 148.97 163340000 0 0 0 0 0 0 21492000 29530000 33568000 0 0 0 24337000 25584000 19386000 0 0 0 5664000 3781500 0 0 0 0 17218 1097 16681 319794;319795;319796;319797;319798;319799;319800;319801;319802;319803;319804;319805;319806;319807 195623;195624;195625;195626;195627;195628;195629 195625 4 QVADNLAQR Unmodified 1013.5254 0.52540669 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.928 13.769 2 8.737E-08 4154 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 186.09 165.14 446800000 31544000 27802000 36031000 0 0 0 47591000 41574000 33723000 0 0 0 34019000 34906000 31724000 0 0 0 40940000 39232000 47718000 0 0 0 17219 97 16682 319808;319809;319810;319811;319812;319813;319814;319815;319816;319817;319818;319819 195630;195631;195632;195633;195634;195635;195636;195637;195638;195639;195640 195635 9 QVAETIGYPTPNLAAR Unmodified 1699.8893 0.88933392 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.574 33.125 2 3.4596E-39 15867 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 256.47 243.97 219930000 18510000 17699000 20321000 0 0 0 11341000 11556000 10759000 0 0 0 24642000 22661000 19401000 0 0 0 22348000 20177000 20513000 0 0 0 17220 951 16683 319820;319821;319822;319823;319824;319825;319826;319827;319828;319829;319830;319831 195641;195642;195643;195644;195645;195646;195647;195648;195649;195650;195651 195646 11 QVAEYADGIGPDYHMLIEETSQPGNIK Unmodified 2974.4019 0.40185224 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.318 43.881 3 1.7571E-22 21371 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 160 157.97 738990000 39688000 37009000 38798000 0 0 0 73084000 64655000 62050000 0 0 0 79114000 78290000 75818000 0 0 0 69661000 65460000 55362000 0 0 0 17221 213 16684 319832;319833;319834;319835;319836;319837;319838;319839;319840;319841;319842;319843 195652;195653;195654;195655;195656;195657;195658;195659;195660;195661;195662;195663 195656 12 QVAILAVAGAEK Unmodified 1168.6816 0.68157298 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.305 30.918 2 3.4493E-06 14799 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 135.28 104.69 2089900000 45447000 55294000 43260000 22723000 21700000 18814000 151920000 156970000 144820000 82468000 78645000 70662000 119370000 113020000 116950000 21385000 17710000 20897000 198200000 203000000 190700000 76170000 61283000 58475000 17222 642 16685 319844;319845;319846;319847;319848;319849;319850;319851;319852;319853;319854;319855;319856;319857;319858;319859;319860;319861;319862;319863;319864;319865;319866;319867 195664;195665;195666;195667;195668;195669;195670;195671;195672;195673;195674;195675;195676;195677;195678;195679;195680;195681;195682;195683;195684;195685;195686 195672 21 QVAIPDIADLTSEQFQK Unmodified 1901.9735 0.97345748 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 51.231 49.911 2;3 3.9497E-06 24553 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.43 79.642 305530000 233200000 28977000 27724000 0 0 0 9842500 5790400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17223 995 16686 319868;319869;319870;319871;319872;319873 195687;195688 195687 2 QVANGVVDAFVHTVEQYVTKPVDAK Unmodified 2713.4075 0.40752997 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.402 52.954 4 1.7244E-05 24927 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 87.102 84.727 299650000 21675000 22723000 17994000 0 0 0 26466000 21478000 22996000 0 0 0 31362000 27879000 27560000 0 0 0 27487000 24380000 27644000 0 0 0 17224 1959 16687 319874;319875;319876;319877;319878;319879;319880;319881;319882;319883;319884;319885 195689;195690;195691 195691 3 QVASFPR Unmodified 803.42899 0.42898711 398 P0A855 tolB Protein TolB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.385 16.948 2 0.0043665 5807 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 104.11 97.724 292420000 0 0 44493000 0 0 0 0 32742000 0 3318100 1559900 0 24515000 21261000 24800000 0 0 2521700 46504000 44935000 36350000 0 5114500 4302400 17225 398 16688 319886;319887;319888;319889;319890;319891;319892;319893;319894;319895;319896;319897;319898;319899;319900;319901 195692;195693;195694;195695;195696;195697;195698;195699;195700;195701;195702 195696 11 QVASHINEETGR Unmodified 1339.648 0.64804102 1382 P31808 yciK Uncharacterized oxidoreductase YciK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 11.073 11.825 2 5.5369E-07 3003 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 119.27 109.04 109130000 29044000 0 24855000 0 0 0 14263000 11982000 13959000 0 0 0 0 0 0 0 0 0 15024000 0 0 0 0 0 17226 1382 16689 319902;319903;319904;319905;319906;319907;319908 195703;195704;195705;195706;195707;195708;195709 195707 7 QVAVLVPTTLLAQQHYDNFR Unmodified 2312.2277 0.22771511 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 44.181 44.303 3 0.0041161 16731 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 49.066 45.262 9112000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4457300 2389100 2265600 0 0 0 0 0 0 17227 1355 16690 319909;319910;319911 195710 195710 1 QVCNLADPVGQVIDGGVLDSGLR Unmodified 2381.2009 0.20090801 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.806 51.459 2;3 1.8657E-75 25564 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 302.32 293.27 592380000 76437000 72843000 63914000 0 0 0 45568000 40446000 35539000 0 0 0 42750000 43444000 43324000 0 0 0 40032000 43295000 44788000 0 0 0 17228 148 16691 319912;319913;319914;319915;319916;319917;319918;319919;319920;319921;319922;319923;319924;319925;319926;319927;319928;319929;319930;319931;319932;319933;319934;319935 195711;195712;195713;195714;195715;195716;195717;195718;195719;195720;195721;195722;195723;195724;195725;195726;195727;195728;195729 195712 19 QVDLIIHGGYLGQK Unmodified 1539.8409 0.84092717 962 P0AFR4 yciO Uncharacterized protein YciO yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 32.251 31.081 3 0.070349 14728 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 28.791 17.111 35074000 8062500 5351600 8350400 0 0 0 0 0 0 0 0 0 2442800 1313500 2828600 0 0 0 0 3172400 3552500 0 0 0 17229 962 16692 319936;319937;319938;319939;319940;319941;319942;319943 195730 195730 1 QVDLIIHGGYLGQKPTTVIDLTDDTPVVVR Unmodified 3261.7609 0.76089252 962 P0AFR4 yciO Uncharacterized protein YciO yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.716 47.375 4 2.2711E-11 17012 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 117.03 116.45 357880000 47928000 49230000 35636000 14673000 19082000 21992000 18811000 19613000 23062000 0 0 0 13116000 0 17210000 0 0 0 24987000 26789000 25757000 0 0 0 17230 962 16693 319944;319945;319946;319947;319948;319949;319950;319951;319952;319953;319954;319955;319956;319957 195731;195732;195733;195734;195735;195736 195733 3 QVDRTELK Unmodified 987.53491 0.53490874 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.969 11.428 2 0.0033324 2265 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 104.75 72.786 1408000000 0 0 0 0 0 0 0 244140000 272830000 0 61102000 0 0 0 0 20506000 17125000 0 231830000 236710000 215150000 32835000 36969000 38821000 17231 1633 16694 319958;319959;319960;319961;319962;319963;319964;319965;319966;319967;319968 195737 195737 1 QVDVATNNTENLDK Unmodified 1559.7427 0.74272927 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 16.906 17.683 2 4.2523E-68 6350 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 322.67 321.42 501190000 0 0 0 0 0 0 31381000 37645000 40472000 0 0 0 42999000 27937000 36219000 0 0 0 100700000 94168000 89674000 0 0 0 17232 1124 16695 319969;319970;319971;319972;319973;319974;319975;319976;319977 195738;195739;195740;195741;195742;195743;195744;195745;195746 195740 9 QVDVLYR Unmodified 891.48142 0.48141661 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.626 21.664 2 0.0023108 7335 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 114.54 88.431 850190000 21948000 25497000 22216000 0 0 804990 66807000 83635000 89641000 38645000 25519000 18640000 67834000 49395000 54021000 0 0 0 86265000 85507000 85014000 9985400 9103300 9715300 17233 30 16696 319978;319979;319980;319981;319982;319983;319984;319985;319986;319987;319988;319989;319990;319991;319992;319993;319994;319995;319996 195747;195748;195749;195750;195751;195752;195753;195754;195755;195756;195757;195758;195759 195747 13 QVDYVPGTPCKPDQQNGIWIVQAHEWGK Unmodified 3249.5666 0.56656658 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.796 38.122 4 0.00057068 18629 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 61.488 59.509 143820000 14204000 12889000 11616000 0 0 0 18535000 14173000 14480000 0 0 0 8115200 7064000 7712700 0 0 0 12270000 12077000 10685000 0 0 0 17234 154 16697 319997;319998;319999;320000;320001;320002;320003;320004;320005;320006;320007;320008 195760;195761 195761 2 QVEALVEASK Unmodified 1072.5764 0.57643921 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS 1 19.182 19.485 2 0.0003624 7544 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 81.95 62.436 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17235 60 16698 320009 195762 195762 1 QVEALVEASKEEVK Unmodified 1557.825 0.82500233 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 21.83 21.815 2;3 4.4285E-27 9011 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 299.29 270.49 1286900000 99671000 100320000 68920000 0 0 677380 124680000 109360000 110000000 0 2439200 1991800 90102000 85675000 86923000 0 0 0 142200000 133890000 130030000 0 0 0 17236 60 16699 320010;320011;320012;320013;320014;320015;320016;320017;320018;320019;320020;320021;320022;320023;320024;320025;320026;320027;320028;320029;320030;320031;320032;320033;320034;320035;320036 195763;195764;195765;195766;195767;195768;195769;195770;195771;195772;195773;195774;195775;195776;195777;195778;195779;195780;195781;195782;195783;195784;195785 195770 23 QVEAPDDWHR Unmodified 1251.5632 0.56324876 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 16.556 17.079 2;3 7.6206E-07 6023 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.23 165.01 872530000 25213000 22966000 24100000 0 0 0 92050000 74983000 85227000 14822000 9962800 35779000 64330000 52883000 54597000 15177000 16313000 13356000 83727000 89608000 84804000 0 5625500 7009900 17237 30 16700 320037;320038;320039;320040;320041;320042;320043;320044;320045;320046;320047;320048;320049;320050;320051;320052;320053;320054;320055;320056;320057;320058;320059;320060;320061;320062;320063;320064;320065;320066;320067;320068;320069;320070;320071;320072;320073;320074 195786;195787;195788;195789;195790;195791;195792;195793;195794;195795;195796;195797;195798;195799;195800;195801;195802;195803;195804;195805;195806;195807;195808;195809;195810;195811;195812 195801 25 QVEEAGDKLPADDK Unmodified 1513.726 0.72601657 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 2 2 12.577 13.329 2;3 2.8847E-35 3916 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 320.07 297.73 1571900000 107620000 100060000 100180000 1558100 0 589130 164790000 150390000 149760000 8355400 10283000 9617500 138400000 115900000 126020000 0 0 0 117400000 135200000 135800000 0 0 0 17238 293 16701 320075;320076;320077;320078;320079;320080;320081;320082;320083;320084;320085;320086;320087;320088;320089;320090;320091;320092;320093;320094;320095;320096;320097;320098;320099;320100;320101;320102;320103;320104;320105 195813;195814;195815;195816;195817;195818;195819;195820;195821;195822;195823;195824;195825;195826;195827;195828;195829;195830;195831;195832;195833;195834;195835;195836 195819 24 QVEEAGDKLPADDKTAIESALTALETALK Unmodified 3026.5659 0.56594068 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.709 53.242 4 0.0010688 25209 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 56.366 53.947 338200000 37341000 26580000 25203000 0 0 0 31887000 28569000 34898000 3012800 3161100 0 19872000 25366000 17908000 0 0 0 27012000 24954000 32433000 0 0 0 17239 293 16702 320106;320107;320108;320109;320110;320111;320112;320113;320114;320115;320116;320117;320118;320119 195837 195837 1 QVEEMLA Unmodified 818.3844 0.38440468 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 1 1 1 1 1 1 2 2 2 29.33 27.927 1;2 0.0068895 12858 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.593 92.679 960030000 147900000 131850000 125200000 5038400 3563000 4068200 37399000 42472000 39594000 8209300 3483300 8462600 43047000 39961000 67345000 5777600 1529400 1542000 71554000 71320000 68994000 10775000 10902000 10038000 17240 1630 16703 320120;320121;320122;320123;320124;320125;320126;320127;320128;320129;320130;320131;320132;320133;320134;320135;320136;320137;320138;320139;320140;320141;320142;320143;320144;320145;320146;320147;320148;320149;320150;320151;320152;320153;320154;320155;320156;320157;320158;320159 195838;195839;195840;195841;195842;195843;195844;195845;195846;195847;195848 195847 9 QVFGGQVVGQALYAAK Unmodified 1634.878 0.87804096 1017 P0AGG2 tesB Acyl-CoA thioesterase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.178 37.502 2 1.5777E-13 18285 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.12 153.32 180090000 20274000 21692000 19092000 0 0 235180 16177000 13843000 12372000 0 0 0 11689000 10929000 10572000 0 0 0 14937000 15752000 12530000 0 0 0 17241 1017 16704 320160;320161;320162;320163;320164;320165;320166;320167;320168;320169;320170;320171;320172 195849;195850;195851;195852;195853;195854;195855;195856;195857;195858;195859 195855 10 QVFGQEFK Unmodified 981.49198 0.4919813 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 23.115 22.508 2 0.00063659 9744 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.55 110.19 615860000 94768000 83095000 74375000 0 0 0 0 0 0 0 0 0 62299000 49880000 0 0 0 0 61720000 98938000 90781000 0 0 0 17242 181 16705 320173;320174;320175;320176;320177;320178;320179;320180;320181;320182 195860;195861;195862;195863;195864 195861 5 QVGLCHSVQGTAEELAR Unmodified 1853.9054 0.90539469 129 P06720 melA Alpha-galactosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 25.526 24.288 3 0.0031374 7847 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 56.959 53.239 16543000 0 0 0 2680700 2543800 3593500 0 3647200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4078100 0 17243 129 16706 320183;320184;320185;320186;320187;320188 195865;195866;195867;195868;195869 195869 5 QVGLENYAHSYPDELSGGMR Unmodified 2222.0062 0.00623095 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.324 32.723 3 6.6665E-07 12494 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 94.856 91.933 585790000 37936000 37591000 42092000 5251800 8632300 9738600 31501000 31308000 29379000 18479000 16205000 13564000 21318000 24003000 24368000 0 0 3909700 52282000 64658000 61114000 16833000 21080000 14553000 17244 1094 16707 320189;320190;320191;320192;320193;320194;320195;320196;320197;320198;320199;320200;320201;320202;320203;320204;320205;320206;320207;320208;320209;320210 195870;195871;195872;195873;195874;195875;195876 195872 7 QVGMATLAVPIHNAEEAFNPNAVK Unmodified 2520.2795 0.27949268 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.065 44.59 3 1.651E-06 22064 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.729 86.369 512770000 38886000 39832000 39288000 0 0 0 41517000 33103000 40741000 0 0 0 35342000 43990000 43156000 0 0 0 43764000 58302000 54847000 0 0 0 17245 97 16708 320211;320212;320213;320214;320215;320216;320217;320218;320219;320220;320221;320222 195877;195878;195879;195880;195881;195882;195883;195884;195885 195879 9 QVGVPYIIVFLNK Unmodified 1488.8704 0.87043638 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 3 3 3 2 2 2 3 3 2 2 2 2 4 3 3 2 2 2 54.851 53.562 2;3 0.00016664 26344 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 82.505 77.226 30038000000 2395400000 2200500000 2125200000 87688000 84983000 85456000 2070500000 1989500000 2078000000 61249000 54951000 50420000 2497700000 2325100000 2166100000 66611000 57219000 51747000 3390500000 3184300000 2835600000 60445000 62213000 56925000 17246 1048 16709 320223;320224;320225;320226;320227;320228;320229;320230;320231;320232;320233;320234;320235;320236;320237;320238;320239;320240;320241;320242;320243;320244;320245;320246;320247;320248;320249;320250;320251;320252;320253;320254;320255;320256;320257;320258;320259;320260;320261;320262;320263;320264;320265;320266;320267;320268;320269;320270;320271;320272;320273;320274;320275;320276;320277;320278;320279;320280 195886;195887;195888;195889;195890;195891;195892;195893;195894;195895;195896;195897;195898;195899;195900;195901;195902;195903;195904;195905;195906;195907;195908;195909;195910;195911;195912;195913;195914;195915;195916;195917;195918;195919;195920;195921;195922;195923;195924;195925;195926;195927 195900 42 QVHASINPVETLFVVDAMTGQDAANTAK Unmodified 2926.4495 0.44947114 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.487 51.344 3 4.2412E-31 25278 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187.51 185.3 454480000 33282000 33248000 25376000 5044900 6924000 5132800 20341000 16399000 20000000 32410000 29160000 22190000 14212000 18441000 20686000 7505600 6880900 7443600 34600000 30944000 32948000 10070000 12188000 9052700 17247 1009 16710 320281;320282;320283;320284;320285;320286;320287;320288;320289;320290;320291;320292;320293;320294;320295;320296;320297;320298;320299;320300;320301;320302;320303;320304 195928;195929;195930;195931;195932;195933;195934;195935;195936;195937;195938;195939;195940;195941;195942;195943 195939 16 QVHEQCLALHSQQQTLQQQDVLAAQSLQK Unmodified 3356.6895 0.68953526 1090 P13458 sbcC Nuclease SbcCD subunit C yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.143 27.543 4 0.00019743 10659 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 64.733 64.141 35039000 0 0 0 0 1399300 0 4172600 0 0 3954100 4862700 3440800 3321200 3199000 3672300 0 0 0 0 7016900 0 0 0 0 17248 1090 16711 320305;320306;320307;320308;320309;320310;320311;320312;320313 195944;195945;195946 195944 3 QVHESMPK Unmodified 954.4593 0.45930096 1962 Q46868 yqiC Uncharacterized protein YqiC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.635 11.347 2 0.0036566 2261 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 90.308 67.686 369550000 23779000 26185000 15844000 7801100 6953900 7735200 31362000 32510000 27894000 9906100 8168900 9350300 27025000 24985000 29949000 2529600 0 0 30275000 25729000 21572000 0 0 0 17249 1962 16712 320314;320315;320316;320317;320318;320319;320320;320321;320322;320323;320324;320325;320326;320327;320328;320329;320330;320331;320332 195947;195948;195949 195947 3 QVHHIAIIATDYAVSK Unmodified 1764.9523 0.95226853 1603 P52096 yaeR Uncharacterized protein YaeR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.257 22.537 3 0.00010801 9395 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 74.141 69.898 126840000 10103000 11877000 10988000 0 0 298280 14293000 15849000 12273000 0 0 0 10490000 7083100 8318500 0 0 0 7518200 9019500 8730000 0 0 0 17250 1603 16713 320333;320334;320335;320336;320337;320338;320339;320340;320341;320342;320343;320344;320345 195950;195951 195951 2 QVHMANLCVVGGFAVNGVAALHSDLVVK Unmodified 2904.5102 0.51023768 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 49.641 48.083 4 0.00021024 19106 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 64.779 62.774 27846000 0 0 0 0 0 0 0 0 0 7857800 7850300 9490200 0 0 0 0 0 0 0 0 0 0 2648000 0 17251 30 16714 320346;320347;320348;320349 195952 195952 1 QVHSNSFMRPSPR Unmodified 1541.7521 0.75212894 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 2 1 2 3 3 3 3 2 2 1 1 3 3 3 12.364 12.812 2;3;4 7.8421E-06 3050 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 110.92 110.92 524100000 4770400 0 4882100 16001000 15594000 16818000 6973800 0 14046000 88227000 82313000 71911000 0 0 0 18008000 18239000 16370000 5333000 0 7472200 44985000 45535000 46621000 17252 564 16715 320350;320351;320352;320353;320354;320355;320356;320357;320358;320359;320360;320361;320362;320363;320364;320365;320366;320367;320368;320369;320370;320371;320372;320373;320374;320375;320376;320377;320378;320379;320380;320381;320382;320383;320384;320385;320386;320387;320388 195953;195954;195955;195956;195957;195958;195959;195960;195961;195962;195963;195964;195965;195966;195967;195968;195969;195970;195971;195972;195973 195957 21 QVIDASHAEGK Unmodified 1153.5728 0.57275081 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 1 2 2 2 2 1 1 2 2 2 1 11.402 12.069 2;3 1.0063E-07 3112 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 173.14 170.13 5968600000 345110000 337980000 316350000 830850 0 0 474370000 455430000 475530000 13559000 8133400 11974000 679480000 630540000 514350000 0 5125700 3390300 547000000 576810000 569570000 0 0 3085500 17253 192 16716 320389;320390;320391;320392;320393;320394;320395;320396;320397;320398;320399;320400;320401;320402;320403;320404;320405;320406;320407;320408;320409;320410;320411;320412;320413;320414;320415;320416;320417;320418;320419;320420;320421 195974;195975;195976;195977;195978;195979;195980;195981;195982;195983;195984;195985;195986;195987;195988;195989;195990;195991;195992;195993;195994;195995;195996;195997;195998 195989 24 QVIDDAAAHLSEVAQGDDVDAIEQAIK Unmodified 2820.3777 0.37774598 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 50.447 49.293 3 1.2618E-11 23084 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 132.35 119.16 902020000 0 57541000 0 0 0 1283400 56973000 68039000 55503000 8588000 6963000 10636000 0 97215000 73064000 6127900 3565700 7627200 122870000 110680000 107400000 3876100 5458200 98607000 17254 294 16717 320422;320423;320424;320425;320426;320427;320428;320429;320430;320431;320432;320433;320434;320435;320436;320437;320438;320439;320440;320441;320442 195999;196000;196001;196002;196003;196004;196005;196006;196007 196007 9 QVIFNPNLFPYENMEGK Unmodified 2038.9822 0.98224803 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.207 49.951 2 9.9184E-14 23375 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 201.04 195.87 709080000 81698000 74798000 67257000 0 0 0 53623000 59208000 54123000 0 0 0 56169000 57921000 55877000 0 0 0 50314000 42461000 55630000 0 0 0 17255 421 16718 320443;320444;320445;320446;320447;320448;320449;320450;320451;320452;320453;320454 196008;196009;196010;196011;196012 196011 5 QVIGQVAADLR Unmodified 1168.6564 0.65642086 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.729 27.446 2 3.3193E-10 10382 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 185.81 163.58 4748500000 759540000 610020000 486590000 11752000 14716000 13614000 248890000 0 251550000 35415000 31058000 29191000 251920000 262420000 254920000 16315000 12532000 14086000 453660000 505420000 394450000 32061000 28743000 29629000 17256 987 16719 320455;320456;320457;320458;320459;320460;320461;320462;320463;320464;320465;320466;320467;320468;320469;320470;320471;320472;320473;320474;320475;320476;320477 196013;196014;196015;196016;196017;196018;196019;196020;196021;196022;196023;196024;196025;196026;196027;196028;196029;196030;196031;196032;196033;196034;196035 196017 22 QVIGVDINQHAVDTINR Unmodified 1890.9912 0.99117323 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.167 28.81 3 1.5183E-06 13397 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 92.977 84.586 300920000 12411000 15142000 7376500 0 0 0 29705000 23141000 22110000 0 0 0 27112000 28606000 22087000 0 0 0 38699000 39308000 35221000 0 0 0 17257 1307 16720 320478;320479;320480;320481;320482;320483;320484;320485;320486;320487;320488;320489 196036;196037;196038;196039;196040;196041;196042;196043;196044 196041 9 QVIQFIDLSLITK Unmodified 1516.8865 0.88648038 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.637 53.21 2 3.4447E-07 26438 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.04 148.71 1905700000 493050000 484090000 434000000 12722000 12078000 12322000 106640000 105710000 110560000 0 25837000 0 12650000 12516000 11946000 0 0 0 26675000 25296000 17796000 0 1835300 0 17258 677 16721 320490;320491;320492;320493;320494;320495;320496;320497;320498;320499;320500;320501;320502;320503;320504;320505;320506 196045;196046;196047;196048;196049;196050;196051;196052 196045 6 QVIQLTPQEDESTLK Unmodified 1727.8941 0.89414453 1212 P23827 eco Ecotin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.667 30.2 2 2.6415E-20 14341 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 215.71 191.86 1671200000 160610000 150180000 128350000 0 655250 0 159530000 159490000 143730000 1407000 0 0 111910000 109240000 113320000 0 0 0 152120000 142980000 137700000 0 0 0 17259 1212 16722 320507;320508;320509;320510;320511;320512;320513;320514;320515;320516;320517;320518;320519;320520 196053;196054;196055;196056;196057;196058 196055 6 QVLDNLTMEK Oxidation (M) 1205.5962 0.59618837 16 CON__P35527 yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 3 1 1 1 1 1 2 1 23.826 22.904 2 0.0024412 8083 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 81.95 73.187 61901000 0 0 6710900 1449600 1573700 1803700 0 0 0 10497000 10179000 11235000 0 0 0 1137000 1009400 0 2225800 0 1813300 2890200 4915000 4461200 + 17260 16 16723 320521;320522;320523;320524;320525;320526;320527;320528;320529;320530;320531;320532;320533;320534;320535;320536;320537;320538;320539;320540 196059;196060;196061;196062;196063;196064;196065;196066 196063 6 8 QVLFTTPYYDNSALFVGQQGK Unmodified 2375.1798 0.17976186 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 2 2 2 2 2 2 50.911 49.658 2;3 6.3809E-28 24226 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 187.5 184.04 1297400000 220950000 212800000 173660000 377640 673610 409480 42473000 33328000 61441000 0 0 0 89888000 87685000 87774000 0 0 0 98896000 98464000 88540000 0 0 0 17261 1349 16724 320541;320542;320543;320544;320545;320546;320547;320548;320549;320550;320551;320552;320553;320554;320555;320556;320557;320558;320559;320560;320561;320562;320563;320564;320565;320566 196067;196068;196069;196070;196071;196072;196073;196074;196075;196076;196077;196078;196079;196080;196081;196082;196083;196084;196085;196086;196087;196088 196080 22 QVLGTHVSQK Unmodified 1095.6037 0.60365701 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 11.138 11.949 2;3 4.5017E-05 2992 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 161.27 129.96 1597400000 155000000 120370000 161380000 1587200 1027700 1072300 135070000 128040000 134880000 6197300 0 0 103440000 101990000 110380000 0 0 0 135970000 154930000 141150000 4949100 0 0 17262 59 16725 320567;320568;320569;320570;320571;320572;320573;320574;320575;320576;320577;320578;320579;320580;320581;320582;320583;320584;320585;320586;320587;320588;320589;320590;320591;320592;320593;320594;320595 196089;196090;196091;196092;196093;196094;196095;196096;196097;196098;196099;196100;196101 196091 13 QVLNMPTKR Unmodified 1085.6015 0.60154852 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 1 2 2 2 14.388 14.791 2;3 0.003716 3910 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 83.265 56.011 42885000 0 0 0 3075600 2989300 3330000 0 0 0 5872400 5277000 4960000 0 0 0 672430 0 902120 0 0 0 5119200 5490200 5197200 17263 582 16726 320596;320597;320598;320599;320600;320601;320602;320603;320604;320605;320606;320607;320608;320609;320610;320611;320612;320613;320614;320615 196102;196103;196104 196103 3 QVLPAHDPDCFLCAGNVR Unmodified 2067.9619 0.96186371 203 P09148 galT Galactose-1-phosphate uridylyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 33.365 31.862 3 0.00066369 15355 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.507 61.41 87001000 0 34037000 0 0 0 0 0 21942000 23017000 0 0 0 0 8004800 0 0 0 0 0 0 0 0 0 0 17264 203 16727 320616;320617;320618;320619 196105;196106 196106 2 QVLTAMIK Unmodified 902.52592 0.52592396 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 26.041 25.069 2 0.0030532 11351 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.352 57.707 171470000 58823000 54472000 58178000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17265 1888 16728 320620;320621;320622 196107;196108;196109 196107 3 QVLTHGFTVDGQGR Unmodified 1513.7637 0.76373948 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 20.551 20.974 2;3 6.9946E-20 8466 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 273.54 267.58 2774200000 274120000 275360000 247910000 0 0 0 176290000 198320000 176420000 0 0 0 214100000 194100000 178840000 0 0 0 282960000 288830000 266920000 0 0 0 17266 58 16729 320623;320624;320625;320626;320627;320628;320629;320630;320631;320632;320633;320634;320635;320636;320637;320638;320639;320640;320641;320642;320643;320644;320645;320646 196110;196111;196112;196113;196114;196115;196116;196117;196118;196119;196120;196121;196122;196123;196124;196125;196126;196127;196128;196129;196130;196131;196132;196133 196114 24 QVLTLIADFR Unmodified 1174.671 0.67100829 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 47.955 46.697 2 0.08694 22680 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 45.368 37.027 82037000 18313000 18680000 16454000 0 0 0 0 0 0 0 0 0 7232000 2849700 3247500 0 0 0 6158400 5300500 3801800 0 0 0 17267 1353 16730 320647;320648;320649;320650;320651;320652;320653;320654;320655 196134 196134 0 QVLTSQDEFVIAPGFSTDPLEEQHSVVPGLLHK Unmodified 3616.8413 0.84132768 1518 P39280 epmB L-lysine 2,3-aminomutase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.813 49.501 4 2.1654E-07 23953 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 75.88 74.509 153490000 17245000 14725000 13441000 0 0 0 8944000 7731700 11757000 0 0 0 7602200 9248800 10580000 0 0 0 16313000 19625000 16274000 0 0 0 17268 1518 16731 320656;320657;320658;320659;320660;320661;320662;320663;320664;320665;320666;320667 196135 196135 1 QVLVDSGVDK Unmodified 1058.5608 0.56078914 1546 P39835 gntT High-affinity gluconate transporter yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 17.456 17.997 2 0.00031552 6183 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 111.06 95.446 217880000 0 0 0 0 0 0 25788000 21328000 24841000 0 996820 754740 21946000 23067000 22557000 0 0 0 24167000 27051000 25385000 0 0 0 17269 1546 16732 320668;320669;320670;320671;320672;320673;320674;320675;320676;320677;320678 196136;196137;196138;196139;196140;196141;196142;196143 196143 7 QVMQSWADAEWFLNR Unmodified 1879.8676 0.86755262 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 53.567 52.116 2 1.6243E-08 25537 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 142.07 135.84 53521000 0 0 0 0 0 0 5505400 3339100 4782800 0 0 0 3415600 3244400 3096500 0 0 0 12932000 9985200 7219600 0 0 0 17270 1444 16733 320679;320680;320681;320682;320683;320684;320685;320686;320687 196144 196144 1 QVMQSWADAEWFLNRPALAEK Unmodified 2489.2162 0.21616415 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 4 3 1 1 1 3 2 3 1 1 2 3 3 3 3 3 1 1 1 50.464 49.073 2;3;4 2.6419E-63 24108 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 338.69 334.14 3808100000 489180000 538210000 468890000 4371900 5404500 5385100 190190000 167220000 196470000 3014400 2565400 0 200310000 177870000 199450000 0 0 0 380920000 388910000 377690000 2908300 5136200 3997300 17271 1444 16734 320688;320689;320690;320691;320692;320693;320694;320695;320696;320697;320698;320699;320700;320701;320702;320703;320704;320705;320706;320707;320708;320709;320710;320711;320712;320713;320714;320715;320716;320717;320718;320719;320720;320721;320722;320723;320724;320725;320726;320727;320728;320729;320730 196145;196146;196147;196148;196149;196150;196151;196152;196153;196154;196155;196156;196157;196158;196159;196160;196161;196162;196163;196164;196165;196166;196167;196168;196169 196159 25 QVMVIGK Unmodified 773.44695 0.44694536 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 2 2 2 1 1 2 2 2 1 2 2 17.568 18.092 1;2 0.025713 6769 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 71.378 63.374 267160000 24227000 22486000 26467000 0 0 0 19249000 20174000 17438000 0 3385100 2462400 15768000 13459000 13574000 0 1409300 1741600 22353000 23615000 24383000 4177700 5883600 4911200 17272 944 16735 320731;320732;320733;320734;320735;320736;320737;320738;320739;320740;320741;320742;320743;320744;320745;320746;320747;320748;320749;320750;320751;320752;320753;320754;320755;320756;320757;320758;320759;320760 196170;196171;196172;196173;196174;196175;196176;196177;196178 196171 8 QVMVYTHDSIGLGEDGPTHQPVEQVASLR Unmodified 3162.5404 0.54041141 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 35.146 33.672 3;4 2.4521E-109 16364 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 328.37 311.43 4311700000 174450000 150810000 140780000 1686200 1827000 1836200 576390000 542570000 450560000 0 0 0 275950000 336890000 342640000 0 0 0 457300000 399970000 458030000 0 0 0 17273 1299 16736 320761;320762;320763;320764;320765;320766;320767;320768;320769;320770;320771;320772;320773;320774;320775;320776;320777;320778;320779;320780;320781;320782;320783;320784;320785;320786;320787 196179;196180;196181;196182;196183;196184;196185;196186;196187;196188;196189;196190;196191;196192;196193;196194;196195;196196;196197;196198;196199;196200;196201;196202;196203;196204;196205;196206;196207;196208 196182 30 QVMVYTHDSIGLGEDGPTHQPVEQVASLR Oxidation (M) 3178.5353 0.53532603 1299 P27302 tktA Transketolase 1 yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 33.374 31.834 4 0.0015607 15000 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 51.296 46.03 87488000 0 0 7267200 0 0 0 13527000 11128000 11336000 0 0 0 0 0 4438900 0 0 0 12243000 13321000 14227000 0 0 0 17274 1299 16736 320788;320789;320790;320791;320792;320793;320794;320795 196209 196209 529 1 QVNLTER Unmodified 858.45593 0.45593014 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 1 1 2 1 2 2 2 2 1 2 2 1 2 2 13.217 13.818 2 0.0017156 3480 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 125.08 104.22 2773700000 42190000 35633000 33714000 11346000 12531000 11340000 53539000 64406000 52228000 51966000 43114000 47018000 623980000 45342000 540320000 31351000 27690000 25897000 70589000 77196000 783500000 29412000 33077000 26345000 17275 1057 16737 320796;320797;320798;320799;320800;320801;320802;320803;320804;320805;320806;320807;320808;320809;320810;320811;320812;320813;320814;320815;320816;320817;320818;320819;320820;320821;320822;320823;320824;320825;320826;320827;320828;320829;320830;320831;320832 196210;196211;196212;196213;196214;196215;196216 196212 7 QVPFSGEIWIDR Unmodified 1445.7303 0.73031409 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.251 44.761 2 7.3883E-05 21792 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.38 91.009 801700000 61855000 51676000 50673000 0 0 0 84818000 68772000 72711000 0 0 0 51388000 51638000 58879000 0 0 0 84562000 93438000 71285000 0 0 0 17276 63 16738 320833;320834;320835;320836;320837;320838;320839;320840;320841;320842;320843;320844 196217;196218;196219;196220;196221;196222;196223;196224;196225;196226;196227 196221 9 QVPILQK Unmodified 824.51199 0.51198846 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.794 20.283 2 0.067741 7402 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 59.795 16.827 1176500000 225680000 230560000 258090000 1141000 708710 922820 106740000 100620000 94911000 0 0 0 22502000 15529000 15835000 0 0 0 36824000 34653000 31764000 0 0 0 17277 703 16739 320845;320846;320847;320848;320849;320850;320851;320852;320853;320854;320855;320856;320857;320858;320859 196228;196229;196230;196231;196232;196233;196234;196235;196236;196237 196237 10 QVPLDLGLVVR Unmodified 1207.7289 0.72885752 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.98 45.409 2 0.00022533 22126 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.25 69.492 137310000 9099500 9149100 10978000 0 0 0 13303000 10265000 10592000 2224600 1629700 2511800 7428900 7145500 5613600 0 0 0 17353000 12821000 13164000 1427200 1175500 1429900 17278 1617 16740 320860;320861;320862;320863;320864;320865;320866;320867;320868;320869;320870;320871;320872;320873;320874;320875;320876;320877 196238;196239;196240;196241;196242;196243;196244;196245;196246;196247;196248;196249 196241 7 QVPQAQHISLTNFLDSGLYTSLTER Unmodified 2817.4297 0.42972197 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.439 51.35 3 0.0016141 24093 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 64.377 61.87 187990000 7753800 0 0 5032300 4843300 5811400 19926000 12239000 15366000 10755000 7312900 5048100 14758000 13887000 12129000 4919900 3355500 5251600 13157000 14388000 12058000 0 0 0 17279 33 16741 320878;320879;320880;320881;320882;320883;320884;320885;320886;320887;320888;320889;320890;320891;320892;320893;320894;320895;320896 196250;196251;196252;196253;196254 196254 0 QVPSTEGQWK Unmodified 1158.5669 0.56693715 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 16.378 17.172 2 0.00024202 6043 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.4 77.736 193730000 24976000 19331000 18352000 0 0 0 23503000 21964000 21684000 0 0 0 16454000 14414000 12252000 0 0 0 9794300 11002000 0 0 0 0 17280 1333 16742 320897;320898;320899;320900;320901;320902;320903;320904;320905;320906;320907 196255;196256;196257;196258;196259;196260;196261;196262;196263;196264;196265 196260 11 QVQADLK Unmodified 800.43922 0.43921744 1072 P11557 damX Cell division protein DamX yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.994 12.549 2 0.16252 2884 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 54.571 8.6187 147170000 13558000 17510000 0 0 0 0 16887000 25558000 14833000 0 0 5704200 13452000 0 13602000 0 1813200 1722600 16670000 0 0 0 2973400 2883100 17281 1072 16743 320908;320909;320910;320911;320912;320913;320914;320915;320916;320917;320918;320919;320920 196266 196266 0 QVQGSTPVQLNLENGKR Unmodified 1866.9912 0.99117323 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 21.935 21.705 3 0.019428 7414 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 42.813 39.209 16339000 0 0 0 845980 1144700 1210700 0 0 0 5613400 5013900 2510600 0 0 0 0 0 0 0 0 0 0 0 0 17282 1477 16744 320921;320922;320923;320924;320925;320926 196267 196267 0 QVQHELK Unmodified 880.47667 0.47666558 281 P0A6U5 rsmG Ribosomal RNA small subunit methyltransferase G yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 8.564 9.1299 2 0.040351 2025 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 64.803 53.082 18323000 2666700 2826500 4104700 0 0 0 0 0 0 0 0 0 0 0 0 805690 0 198710 2083700 2614900 3022500 0 0 0 17283 281 16745 320927;320928;320929;320930;320931;320932;320933;320934 196268;196269 196268 2 QVQQPVMDR Unmodified 1099.5444 0.54442757 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.814 14.318 2 1.2194E-06 3694 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 178.83 174.9 1359900000 66635000 91822000 84521000 0 0 0 119530000 111550000 104440000 83688000 64943000 55698000 83048000 90419000 0 5997900 6932200 5246500 121550000 104000000 108390000 17568000 15810000 18130000 17284 502 16746 320935;320936;320937;320938;320939;320940;320941;320942;320943;320944;320945;320946;320947;320948;320949;320950;320951;320952;320953;320954 196270;196271;196272;196273;196274;196275;196276;196277;196278;196279;196280;196281;196282 196272 13 QVRPGADYNWSLK Unmodified 1532.7736 0.77357588 1628 P60716 lipA Lipoyl synthase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 1 24.916 23.973 2;3 4.3655E-17 10997 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.97 191.64 1585500000 124670000 136130000 98179000 8494700 10109000 15108000 119540000 114280000 108720000 0 4625000 0 107030000 94105000 75689000 4521500 3086500 3666600 171650000 152400000 145720000 34453000 29364000 23980000 17285 1628 16747 320955;320956;320957;320958;320959;320960;320961;320962;320963;320964;320965;320966;320967;320968;320969;320970;320971;320972;320973;320974;320975;320976;320977;320978;320979;320980;320981;320982;320983;320984;320985;320986;320987;320988;320989;320990;320991;320992;320993;320994 196283;196284;196285;196286;196287;196288;196289;196290;196291;196292;196293;196294;196295;196296;196297;196298;196299 196285 17 QVSAEYGLTADK Unmodified 1280.6248 0.62484596 1527 P39337 yjgM Uncharacterized N-acetyltransferase YjgM yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 20.5 20.912 2 0.00090977 8236 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 78.653 58.323 58174000 7840200 7929100 5695300 0 0 0 6684600 4150600 4200800 0 0 0 2899800 4120800 4113200 0 0 0 5689700 4849900 0 0 0 0 17286 1527 16748 320995;320996;320997;320998;320999;321000;321001;321002;321003;321004;321005 196300;196301;196302;196303;196304;196305 196304 4 QVSDGVAHIHASFNNTIVTITDR Unmodified 2494.2564 0.25644906 366 P0A7R9 rpsK 30S ribosomal protein S11 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 1 1 1 1 2 1 3 1 36.017 34.369 3;4 5.9746E-22 16458 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 167.02 158.87 693410000 118620000 142500000 103300000 5801800 4882200 6051900 26820000 0 46893000 5845500 4274000 3946300 32044000 16103000 47951000 0 0 0 29760000 63875000 34734000 0 0 0 17287 366 16749 321006;321007;321008;321009;321010;321011;321012;321013;321014;321015;321016;321017;321018;321019;321020;321021;321022;321023;321024;321025;321026;321027;321028;321029;321030;321031;321032 196306;196307;196308;196309;196310;196311;196312;196313;196314;196315;196316;196317;196318 196308 13 QVSFNSIYMMADSGAR 2 Oxidation (M) 1807.7869 0.78691904 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 2 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 35.074 33.548 2 5.4029E-06 12766 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 98.337 84.179 62551000 0 0 0 0 0 0 0 0 0 4005200 4554300 4350600 0 0 0 10074000 5704300 5537900 0 0 0 7591600 11199000 9533700 17288 458 16750 321033;321034;321035;321036;321037;321038;321039;321040;321041 196319;196320;196321;196322;196323;196324;196325;196326 196326 244;245 8 QVSFNSIYMMADSGAR Oxidation (M) 1791.792 0.79200442 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 8 8 8 8 9 6 4 6 41.151 39.754 2;3 1.5992E-10 12587 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 153.81 147.96 879850000 0 0 0 0 0 0 0 0 0 73479000 84773000 73937000 0 0 0 187480000 107510000 127220000 0 0 0 83471000 63076000 78901000 17289 458 16750 321042;321043;321044;321045;321046;321047;321048;321049;321050;321051;321052;321053;321054;321055;321056;321057;321058;321059;321060;321061;321062;321063;321064;321065;321066;321067;321068;321069;321070;321071;321072;321073;321074;321075;321076;321077;321078;321079;321080;321081;321082;321083;321084;321085;321086;321087;321088;321089;321090;321091;321092;321093;321094;321095;321096;321097;321098;321099;321100;321101;321102;321103;321104;321105;321106 196327;196328;196329;196330;196331;196332;196333;196334;196335;196336;196337;196338;196339;196340;196341;196342;196343;196344;196345;196346;196347;196348;196349;196350;196351;196352;196353;196354;196355;196356;196357;196358;196359;196360;196361;196362;196363;196364;196365;196366;196367;196368;196369;196370;196371;196372;196373;196374;196375;196376;196377;196378;196379;196380;196381;196382;196383;196384;196385;196386;196387;196388;196389;196390 196347 244;245 59 QVSFNSIYMMADSGAR Unmodified 1775.7971 0.7970898 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 5 4 3 2 2 1 8 8 12 2 2 2 4 4 3 45.867 44.81 2;3 6.2789E-19 17371 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 242.48 240.5 17543000000 69743000 70645000 65568000 5951100 7129800 5030700 47805000 50494000 47915000 1254400000 1246200000 1172900000 60541000 57541000 43827000 3848500000 2279000000 2345900000 71630000 84992000 77717000 1584000000 1531100000 1514100000 17290 458 16750 321107;321108;321109;321110;321111;321112;321113;321114;321115;321116;321117;321118;321119;321120;321121;321122;321123;321124;321125;321126;321127;321128;321129;321130;321131;321132;321133;321134;321135;321136;321137;321138;321139;321140;321141;321142;321143;321144;321145;321146;321147;321148;321149;321150;321151;321152;321153;321154;321155;321156;321157;321158;321159;321160;321161;321162;321163;321164;321165;321166;321167;321168;321169;321170;321171;321172;321173;321174;321175;321176;321177;321178;321179;321180;321181;321182 196391;196392;196393;196394;196395;196396;196397;196398;196399;196400;196401;196402;196403;196404;196405;196406;196407;196408;196409;196410;196411;196412;196413;196414;196415;196416;196417;196418;196419;196420;196421;196422;196423;196424;196425;196426;196427;196428;196429;196430;196431;196432;196433;196434;196435;196436;196437;196438;196439;196440;196441;196442;196443;196444;196445;196446;196447;196448;196449;196450;196451;196452;196453;196454;196455;196456;196457;196458;196459;196460;196461 196443 69 QVSFTTPYYENSAVVIAK Unmodified 2016.0204 0.020407676 1350 P30860 artJ ABC transporter arginine-binding protein 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 41.822 40.209 2 2.3986E-06 19492 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.631 87.527 62730000 12211000 11447000 11924000 0 0 0 3026300 0 0 0 0 0 3900600 2324500 2961200 0 0 0 5625200 4595300 4714900 0 0 0 17291 1350 16751 321183;321184;321185;321186;321187;321188;321189;321190;321191;321192 196462 196462 1 QVSGLSNEVIAK Unmodified 1243.6772 0.67721588 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 22.05 21.966 2 0.0010965 9396 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 71.349 57.142 125940000 0 24480000 0 522020 0 0 24971000 0 23082000 0 0 0 0 0 16993000 595560 0 0 0 34427000 0 0 864290 0 17292 280 16752 321193;321194;321195;321196;321197;321198;321199;321200 196463;196464;196465 196463 1 QVSTNLAWEHNR Unmodified 1453.7062 0.7062246 1626 P60651 speB Agmatinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.512 18.194 2 3.8966E-23 6341 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 228.64 228.64 137880000 8234300 8994400 5892400 0 0 0 15102000 10861000 13054000 0 0 0 12385000 9187300 10221000 0 0 0 14415000 14931000 14603000 0 0 0 17293 1626 16753 321201;321202;321203;321204;321205;321206;321207;321208;321209;321210;321211;321212 196466;196467;196468;196469;196470;196471;196472;196473;196474;196475;196476 196475 11 QVSVETTQGLGR Unmodified 1273.6626 0.66262845 396 P0A850 tig Trigger factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 18.583 19.272 2 0.10932 7287 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 38.75 33.767 19186000 0 1660800 0 0 0 0 0 0 0 0 0 0 3600800 4149200 2631600 0 0 0 2606000 1742100 2795700 0 0 0 17294 396 16754 321213;321214;321215;321216;321217;321218;321219 196477 196477 1 QVSVPLAAVLAIYAR Unmodified 1569.9243 0.92426287 974 P0AFZ3 sspB Stringent starvation protein B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.09 53.617 2 4.4011E-07 26252 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.17 124.31 354840000 23113000 23458000 30527000 1216700 0 0 28279000 27065000 24993000 3666100 2560800 0 28965000 23294000 27261000 0 0 0 35225000 38894000 35176000 1141800 0 0 17295 974 16755 321220;321221;321222;321223;321224;321225;321226;321227;321228;321229;321230;321231;321232;321233;321234;321235 196478;196479;196480;196481 196480 4 QVTIAQLEDVKPLLMK Unmodified 1825.0383 0.038306347 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.278 43.863 3 0.0069045 20342 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 49.595 49.595 483150000 28641000 33867000 31617000 0 0 0 36767000 40585000 34749000 0 0 0 37647000 34030000 37043000 0 0 0 61160000 54641000 52400000 0 0 0 17296 1509 16756 321236;321237;321238;321239;321240;321241;321242;321243;321244;321245;321246;321247 196482;196483;196484;196485;196486 196486 5 QVTPGQVMVASTVAK Unmodified 1514.8127 0.81266351 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 29.014 27.738 2 2.2996E-08 12909 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.6 118.16 77009000 0 0 0 0 0 0 3963200 0 5491600 0 0 0 8723800 7195100 8445300 0 0 0 12434000 14127000 16629000 0 0 0 17297 1070 16757 321248;321249;321250;321251;321252;321253;321254;321255 196487;196488;196489;196490;196491 196487 5 QVVSGLNEAQLMR Unmodified 1443.7504 0.7503976 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 31.826 30.406 2 3.6164E-05 14285 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.67 117.74 107840000 0 26823000 26032000 0 0 0 11950000 12311000 13210000 0 0 0 0 3316400 0 0 0 0 4534700 4461400 5200600 0 0 0 17298 1887 16758 321256;321257;321258;321259;321260;321261;321262;321263;321264 196492 196492 1 QVVVGLPDVR Unmodified 1080.6291 0.62914348 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.997 32.566 2 0.00047174 12516 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 115.71 90.155 707270000 23026000 19984000 19449000 10900000 11183000 8764800 83961000 72873000 66183000 16083000 18882000 18319000 43429000 40619000 36196000 5317500 5541700 4654000 65886000 60176000 63438000 12410000 0 0 17299 595 16759 321265;321266;321267;321268;321269;321270;321271;321272;321273;321274;321275;321276;321277;321278;321279;321280;321281;321282;321283;321284;321285;321286 196493;196494;196495;196496;196497;196498;196499;196500;196501;196502;196503;196504;196505;196506;196507;196508;196509;196510;196511;196512;196513 196498 21 QVWAGAIDTVGDK Unmodified 1358.683 0.68302954 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.043 30.7 2 1.1426E-10 14439 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 127.83 106.37 863580000 84933000 84368000 78709000 0 0 0 112570000 107000000 113830000 0 0 0 59979000 58100000 53089000 0 0 0 62061000 0 48944000 0 0 0 17300 1284 16760 321287;321288;321289;321290;321291;321292;321293;321294;321295;321296;321297;321298 196514;196515;196516;196517;196518;196519 196516 6 QVYALGTETFR Unmodified 1283.651 0.65100113 870 P0AEL6 fepB Ferrienterobactin-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 31.897 30.537 2 1.6529E-05 14406 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.11 138.51 70125000 9442400 0 8093000 0 0 0 6098600 3244400 4079000 0 0 0 4835900 4650900 5844000 0 0 0 7180700 8089800 8565900 0 0 0 17301 870 16761 321299;321300;321301;321302;321303;321304;321305;321306;321307;321308;321309 196520;196521;196522 196521 3 QVYGNANLYNK Unmodified 1282.6306 0.63060004 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.316 18.65 2 1.9045E-07 6941 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 166.68 156.41 2812300000 542900000 573450000 478220000 0 0 0 278740000 249830000 226180000 67099000 48217000 43578000 33126000 31893000 34586000 0 4506400 2603900 64459000 58884000 57198000 6118000 6066100 4633100 17302 783 16762 321310;321311;321312;321313;321314;321315;321316;321317;321318;321319;321320;321321;321322;321323;321324;321325;321326;321327;321328;321329 196523;196524;196525;196526;196527;196528;196529;196530;196531;196532;196533;196534;196535;196536;196537 196531 15 QWFGEFISQSR Unmodified 1383.6571 0.65714914 1303 P27431 roxA 50S ribosomal protein L16 arginine hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.381 42.705 2 9.768E-06 21322 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.4 131.79 429060000 41242000 34962000 35554000 0 0 0 37157000 36097000 32529000 1405900 0 0 29811000 28231000 25523000 0 0 0 40246000 36800000 38286000 3852400 3701500 3660700 17303 1303 16763 321330;321331;321332;321333;321334;321335;321336;321337;321338;321339;321340;321341;321342;321343;321344;321345 196538;196539;196540;196541;196542;196543;196544;196545;196546;196547;196548;196549 196538 12 QWFNPDVSVIYPDR Unmodified 1734.8366 0.83657007 1772 P75791 ybiU Uncharacterized protein YbiU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 49.01 47.722 2 2.8487E-06 23104 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 122.42 115.29 71680000 9997500 10559000 8250200 0 0 0 4862300 0 0 0 0 0 4890500 3694800 4165200 0 0 0 8760100 8347500 8153000 0 0 0 17304 1772 16764 321346;321347;321348;321349;321350;321351;321352;321353;321354;321355 196550;196551 196551 2 QWFSVQGITEDNR Unmodified 1578.7427 0.74266969 1873 P76561 ypfH Esterase YpfH yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.9 39.998 2 1.974E-07 19624 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.64 147.1 107310000 13085000 0 0 1310200 1336700 1052200 13668000 9635300 9670400 3787500 2973000 2818400 6677700 5865400 5049600 0 0 0 10330000 10192000 7810600 0 952890 1094200 17305 1873 16765 321356;321357;321358;321359;321360;321361;321362;321363;321364;321365;321366;321367;321368;321369;321370;321371;321372;321373 196552;196553;196554;196555;196556 196555 4 QWFTDVK Unmodified 922.45487 0.45486751 985 P0AG48 rplU 50S ribosomal protein L21 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.579 28.272 2 0.015409 9533 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 81.784 53.677 3006400000 338440000 313910000 330390000 17639000 16012000 20164000 110140000 116920000 100490000 30826000 34376000 30856000 183000000 176290000 158310000 30302000 25597000 23893000 286220000 280170000 275100000 35763000 38962000 32625000 17306 985 16766 321374;321375;321376;321377;321378;321379;321380;321381;321382;321383;321384;321385;321386;321387;321388;321389;321390;321391;321392;321393;321394;321395;321396;321397 196557;196558;196559;196560;196561;196562;196563;196564;196565;196566;196567;196568;196569;196570;196571;196572;196573;196574;196575;196576;196577;196578;196579;196580 196572 24 QWGIDDVPVIVQDK Unmodified 1610.8304 0.83042206 1439 P36649 cueO Blue copper oxidase CueO yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 47.933 46.525 2 8.3117E-06 21935 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 108.98 105.1 143000000 0 20607000 0 0 0 0 15324000 0 14349000 0 0 0 18470000 0 13733000 0 0 0 19486000 20572000 20462000 0 0 0 17307 1439 16767 321398;321399;321400;321401;321402;321403;321404;321405 196581 196581 1 QWHETLHDQFGQYFAVDNVLYHEK Unmodified 3003.394 0.39400517 207 P09158 speE Polyamine aminopropyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.509 39.81 4 0.00016824 19497 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.227 70.004 141360000 23397000 34363000 23884000 0 0 0 6017900 4691100 5235600 0 0 0 5705400 4567100 0 0 0 0 13055000 11439000 9001100 0 0 0 17308 207 16768 321406;321407;321408;321409;321410;321411;321412;321413;321414;321415;321416 196582 196582 1 QWHLEYYVDEPTFFDK Unmodified 2115.9578 0.95780742 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 48.576 47.214 3 0.017812 22777 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 48.423 44.703 41734000 0 0 0 0 0 0 3653600 4111300 4913100 0 0 0 4833400 4279200 3684100 0 0 0 4892900 6029900 5336900 0 0 0 17309 188 16769 321417;321418;321419;321420;321421;321422;321423;321424;321425 196583;196584 196583 1 QWIIDTPFQPELENAIR Unmodified 2069.0582 0.058190166 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.531 53.097 2 2.6035E-24 26367 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 213.84 187.86 766950000 85295000 86189000 79761000 4672000 4986600 5420600 43784000 38668000 39251000 6818500 6674200 6110500 60519000 46318000 43929000 0 0 0 69845000 64130000 56604000 4801300 6510500 6658400 17310 1210 16770 321426;321427;321428;321429;321430;321431;321432;321433;321434;321435;321436;321437;321438;321439;321440;321441;321442;321443;321444;321445;321446 196585;196586;196587;196588;196589;196590;196591;196592;196593;196594;196595 196588 8 QWQAIDK Unmodified 887.45012 0.45011648 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1 1 2 1 1 1 2 2 1 16.302 17.075 2 0.0072941 6177 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.906 54.261 790990000 86194000 76913000 74877000 940430 520180 0 75461000 59727000 78390000 0 0 0 48919000 0 45326000 0 0 0 78403000 83966000 79731000 0 0 1618300 17311 1143 16771 321447;321448;321449;321450;321451;321452;321453;321454;321455;321456;321457;321458;321459;321460;321461;321462;321463;321464;321465 196596;196597;196598;196599;196600;196601;196602;196603 196596 8 QWVNLPLVLHGASGLSTK Unmodified 1919.0629 0.062881613 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 45.94 44.451 2;3 4.7122E-17 21479 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.4 191.03 6224000000 408100000 433660000 392440000 20496000 19811000 18042000 742150000 690930000 707070000 61303000 65027000 59204000 465800000 478820000 405560000 9696100 6017900 12929000 357110000 407540000 428640000 13108000 10307000 10285000 17312 1045 16772 321466;321467;321468;321469;321470;321471;321472;321473;321474;321475;321476;321477;321478;321479;321480;321481;321482;321483;321484;321485;321486;321487;321488;321489;321490;321491;321492;321493;321494;321495;321496;321497;321498;321499;321500;321501;321502;321503;321504;321505 196604;196605;196606;196607;196608;196609;196610;196611;196612;196613;196614;196615;196616;196617;196618;196619;196620;196621;196622;196623;196624;196625;196626;196627;196628;196629;196630;196631;196632;196633;196634;196635;196636;196637;196638 196632 35 QWVNMQDDYHCIYCIVDQHAITVR Unmodified 3063.379 0.37896551 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.179 46.822 3;4 5.2806E-16 22639 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 155.19 154.82 1136000000 70081000 71467000 53800000 0 0 0 111030000 89004000 118690000 0 0 0 101250000 64791000 89047000 0 0 0 123120000 120510000 123180000 0 0 0 17313 57 16773 321506;321507;321508;321509;321510;321511;321512;321513;321514;321515;321516;321517;321518;321519;321520;321521;321522;321523;321524;321525;321526;321527;321528;321529 196639;196640;196641;196642;196643;196644;196645;196646;196647;196648;196649;196650;196651;196652 196645 14 QWWLAVSEALAEMLR Unmodified 1801.9185 0.91852556 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 55.844 54.361 2 8.3291E-06 27103 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 122.33 113.32 21320000 0 0 0 0 0 0 2827700 2358500 0 0 0 0 2652300 3580600 2224700 0 0 0 2807000 3142600 1726700 0 0 0 17314 30 16774 321530;321531;321532;321533;321534;321535;321536;321537 196653 196653 1 QYADIIVPRGGK Unmodified 1315.7248 0.72483478 425 P0A8F4 udk Uridine kinase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 19.56 19.957 3 0.16162 7943 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 22.72 6.5831 74978000 0 0 0 442510 320270 548550 0 39889000 0 0 0 0 32615000 0 0 0 0 0 0 0 0 0 1163000 0 17315 425 16775 321538;321539;321540;321541;321542;321543 196654 196654 1 QYAPMSVAQQSLVLFAAER Unmodified 2108.0725 0.072460022 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 53.735 52.491 2;3 4.4019E-38 21188 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 247.93 242.44 1661200000 48358000 44726000 45417000 22951000 20110000 19633000 77776000 91455000 79577000 126400000 55202000 64467000 103890000 103100000 93276000 43550000 31638000 33971000 137830000 132160000 131120000 54622000 46124000 53844000 17316 645 16776 321544;321545;321546;321547;321548;321549;321550;321551;321552;321553;321554;321555;321556;321557;321558;321559;321560;321561;321562;321563;321564;321565;321566;321567;321568;321569;321570;321571;321572;321573;321574;321575;321576;321577;321578;321579;321580;321581;321582;321583;321584;321585;321586;321587;321588;321589;321590;321591 196655;196656;196657;196658;196659;196660;196661;196662;196663;196664;196665;196666;196667;196668;196669;196670;196671;196672;196673;196674;196675;196676;196677;196678;196679;196680;196681;196682;196683;196684;196685 196662 31 QYCPVCGSMPVSSMVQIGTTQGLR Unmodified 2655.2277 0.22773316 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 2 2 1 2 2 2 2 46.849 45.445 2;3 1.6503E-10 22111 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128.98 127.73 218440000 23514000 16099000 22583000 0 0 0 19099000 18314000 19229000 0 0 0 16591000 9018300 18010000 0 0 0 14647000 19964000 21377000 0 0 0 17317 1085 16777 321592;321593;321594;321595;321596;321597;321598;321599;321600;321601;321602;321603;321604;321605;321606;321607;321608;321609;321610;321611;321612;321613 196686;196687;196688;196689;196690;196691;196692;196693 196687 8 QYDINEAIALLK Unmodified 1389.7504 0.75038083 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 51.094 50.013 2;3 4.2552E-08 18511 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 185.29 174.54 4501400000 17559000 597080000 623410000 14335000 20401000 16393000 184930000 191050000 167880000 34951000 28493000 28617000 279830000 282220000 273960000 67481000 67404000 60494000 497660000 517170000 477220000 17173000 16396000 19318000 17318 353 16778 321614;321615;321616;321617;321618;321619;321620;321621;321622;321623;321624;321625;321626;321627;321628;321629;321630;321631;321632;321633;321634;321635;321636;321637;321638;321639;321640;321641;321642;321643;321644;321645;321646;321647;321648;321649;321650;321651;321652 196694;196695;196696;196697;196698;196699;196700;196701;196702;196703;196704;196705;196706;196707;196708;196709;196710;196711;196712;196713;196714;196715;196716;196717;196718 196696 25 QYDWVTQFEK Unmodified 1342.6194 0.61936665 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 41.117 39.675 2 0.00043623 19436 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 103.19 92.821 300220000 107190000 99318000 90025000 0 0 0 0 0 0 0 0 0 3686300 0 0 0 0 0 0 0 0 0 0 0 17319 1816 16779 321653;321654;321655;321656 196719;196720 196719 1 QYEAQGFEVVIPK Unmodified 1506.7718 0.77184455 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.943 38.269 2 3.8735E-12 18581 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 180.66 160.37 1405500000 129790000 124090000 117060000 0 0 0 117400000 129470000 121200000 0 0 0 98134000 79949000 88685000 0 0 0 133360000 136700000 129690000 0 0 0 17320 1132 16780 321657;321658;321659;321660;321661;321662;321663;321664;321665;321666;321667;321668 196721;196722;196723;196724;196725;196726;196727;196728;196729;196730;196731;196732 196725 12 QYENMYFSWMR Unmodified 1553.6432 0.64315534 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.557 47.226 2 4.5764E-14 22997 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 203.29 201.53 334230000 19701000 20709000 21313000 0 0 0 28187000 25312000 25604000 0 0 0 28411000 28943000 25453000 0 0 0 35321000 38339000 36937000 0 0 0 17321 158 16781 321669;321670;321671;321672;321673;321674;321675;321676;321677;321678;321679;321680 196733;196734;196735;196736;196737;196738;196739;196740;196741 196736 7 QYFDELANVLDIDFR Unmodified 1856.8945 0.89447888 110 P05458 ptrA Protease 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 55.516 54.085 2 0.052394 26523 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 56.951 47.763 33554000 0 3873700 2830500 0 0 0 0 0 0 0 0 0 4427800 0 3705000 0 0 0 6843600 6221500 5652000 0 0 0 17322 110 16782 321681;321682;321683;321684;321685;321686;321687 196742;196743 196743 0 QYFVQPSNR Unmodified 1137.5567 0.55670682 113 P05637 apaH Bis(5'-nucleosyl)-tetraphosphatase [symmetrical] yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.467 19.074 2 0.00030936 7098 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 117.04 113.63 88343000 11589000 11404000 9238100 0 0 0 5016900 4559600 5781400 0 0 0 5842800 5303200 5587000 0 0 0 8513400 7291800 8215900 0 0 0 17323 113 16783 321688;321689;321690;321691;321692;321693;321694;321695;321696;321697;321698;321699 196744;196745 196744 2 QYGEAFEK Unmodified 970.43961 0.43961137 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.571 16.232 2 0.0067301 5687 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.498 67.534 1353000000 154560000 157800000 140880000 0 0 0 93643000 92552000 86888000 0 0 0 132690000 110550000 112090000 0 0 0 264670000 0 0 2083200 1983400 2613200 17324 938 16784 321700;321701;321702;321703;321704;321705;321706;321707;321708;321709;321710;321711;321712;321713;321714 196746;196747;196748;196749;196750;196751;196752;196753;196754;196755;196756;196757 196746 12 QYGEAFEKR Unmodified 1126.5407 0.5407224 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 12.576 13.29 2 0.0049005 3173 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 79.906 76.16 17348000 0 7668600 0 0 942560 1154800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3515900 4065900 17325 938 16785 321715;321716;321717;321718;321719;321720 196758;196759;196760 196759 3 QYHHPLAIHLDHHTK Unmodified 1845.9387 0.93868415 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 3 2 3 3 2 4 4 4 4 4 4 4 4 4 1 2 2 4 2 4 2 2 1 11.683 12.339 2;3;4;5 1.2297E-11 3189 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 210.4 206.87 3445500000 274480000 199570000 79502000 51908000 61316000 29138000 451620000 343190000 357920000 150060000 140690000 166460000 243930000 224810000 158780000 5929400 9151500 8566900 137500000 107440000 205560000 18895000 12932000 6103100 17326 1045 16786 321721;321722;321723;321724;321725;321726;321727;321728;321729;321730;321731;321732;321733;321734;321735;321736;321737;321738;321739;321740;321741;321742;321743;321744;321745;321746;321747;321748;321749;321750;321751;321752;321753;321754;321755;321756;321757;321758;321759;321760;321761;321762;321763;321764;321765;321766;321767;321768;321769;321770;321771;321772;321773;321774;321775;321776;321777;321778;321779;321780;321781;321782;321783;321784;321785;321786;321787;321788;321789;321790;321791;321792;321793 196761;196762;196763;196764;196765;196766;196767;196768;196769;196770;196771;196772;196773;196774;196775;196776;196777;196778;196779;196780;196781;196782;196783;196784;196785;196786;196787;196788;196789;196790;196791;196792;196793;196794;196795;196796;196797;196798;196799;196800;196801;196802;196803;196804;196805;196806;196807 196770 46 QYHLSANEINQIINA Unmodified 1726.8638 0.86384745 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.92 41.324 2 5.363E-12 20026 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 190.86 185.14 1041500000 118260000 109390000 105150000 0 1344900 877740 136800000 132800000 116840000 0 0 0 52883000 48464000 56662000 0 0 0 57936000 55698000 48354000 0 0 0 17327 468 16787 321794;321795;321796;321797;321798;321799;321800;321801;321802;321803;321804;321805;321806;321807 196808;196809;196810 196810 3 QYIETIAR Unmodified 992.5291 0.52909508 1157 P19319 narZ Respiratory nitrate reductase 2 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 20.925 21.119 2 0.14964 8620 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 41.429 12.053 26015000 2741000 3616200 0 0 0 0 5954300 6028400 7674800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17328 1157 16788 321808;321809;321810;321811;321812 196811;196812 196811 2 QYITALNIIHYMHDK Unmodified 1858.94 0.93998929 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 1 3 3 3 1 1 1 3 3 3 3 3 3 2 2 2 39.776 37.997 2;3;4 4.806E-46 18399 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 289.48 283.45 17064000000 651840000 702420000 557960000 3138700 0 980450 2399800000 2141600000 2090200000 11171000 5447400 4618100 1615200000 1622700000 1418200000 0 0 0 1369100000 1209400000 1244700000 4987400 5300700 4900600 17329 212 16789 321813;321814;321815;321816;321817;321818;321819;321820;321821;321822;321823;321824;321825;321826;321827;321828;321829;321830;321831;321832;321833;321834;321835;321836;321837;321838;321839;321840;321841;321842;321843;321844;321845;321846;321847;321848;321849;321850;321851;321852;321853;321854;321855;321856;321857;321858;321859;321860 196813;196814;196815;196816;196817;196818;196819;196820;196821;196822;196823;196824;196825;196826;196827;196828;196829;196830;196831;196832;196833;196834;196835;196836;196837;196838;196839;196840;196841;196842;196843;196844;196845 196823 33 QYITALNIIHYMHDKYSYEASLMALHDRDVIR Unmodified 3878.9236 0.9236343 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 2 By matching By MS/MS By matching By matching 1 1 1 1 49.541 47.979 6 0.15926 19533 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 20.845 19.343 20576000 0 0 0 3510000 0 0 0 0 0 5964000 0 5994400 0 0 0 0 0 0 0 0 0 5108000 0 0 17330 212 16790 321861;321862;321863;321864 196846 196846 1 QYLELMQK Unmodified 1051.5372 0.53721693 407 P0A884 thyA Thymidylate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 28.435 27.398 2 0.0036216 12010 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 102.41 81.852 208900000 35150000 21669000 22380000 0 0 0 0 0 0 0 0 0 29492000 32107000 27400000 0 0 0 0 0 40702000 0 0 0 17331 407 16791 321865;321866;321867;321868;321869;321870;321871;321872;321873 196847;196848;196849;196850;196851;196852;196853;196854;196855 196855 9 QYLIAPSILSADFAR Unmodified 1663.8934 0.89335667 976 P0AG07 rpe Ribulose-phosphate 3-epimerase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 52.913 51.512 2 3.6202E-06 25102 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 107.09 100.85 442930000 61097000 58697000 55438000 0 0 0 0 29543000 30544000 0 0 0 29371000 22832000 25299000 0 0 0 46974000 36564000 46569000 0 0 0 17332 976 16792 321874;321875;321876;321877;321878;321879;321880;321881;321882;321883;321884 196856;196857 196857 1 QYLPNHNAGSYDDPR Unmodified 1745.7758 0.77576073 207 P09158 speE Polyamine aminopropyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 15.484 16.292 2;3 3.4014E-07 5562 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 141.08 135.11 711370000 130760000 123170000 130110000 0 0 0 28456000 24607000 23776000 0 0 0 36206000 32229000 31163000 0 0 0 48030000 57504000 45361000 0 0 0 17333 207 16793 321885;321886;321887;321888;321889;321890;321891;321892;321893;321894;321895;321896;321897;321898;321899;321900;321901;321902;321903;321904;321905;321906;321907;321908 196858;196859;196860;196861;196862;196863;196864;196865;196866;196867;196868;196869;196870;196871;196872;196873;196874;196875;196876;196877 196864 20 QYLPQMQK Unmodified 1034.5219 0.52190122 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 19.988 20.435 2 0.0052891 8119 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 86.866 75.645 243120000 59324000 0 51852000 0 0 0 27757000 29165000 28164000 0 0 0 9845000 0 8195200 0 0 0 15017000 0 13798000 0 0 0 17334 1091 16794 321909;321910;321911;321912;321913;321914;321915;321916;321917 196878;196879;196880 196879 2 QYNISLPAQSLETLIPHVQVIANEPDLVSFLTK Unmodified 3676.9716 0.97161358 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.58 54.099 3 2.2945E-13 26995 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.51 113.07 351730000 19298000 19719000 14365000 0 0 0 26301000 25574000 25977000 11111000 9927000 13757000 33435000 28743000 29050000 0 0 0 33841000 29864000 30767000 0 0 0 17335 1196 16795 321918;321919;321920;321921;321922;321923;321924;321925;321926;321927;321928;321929;321930;321931;321932 196881;196882;196883;196884 196882 4 QYPIVSIEDGLDESDWDGFAYQTK Unmodified 2775.2552 0.25517123 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 3 2 2 2 3 54.563 53.122 2;3 4.6964E-111 25270 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 340.57 339.31 4021900000 271800000 259690000 255200000 0 0 0 364330000 365690000 342010000 0 0 0 381060000 340680000 347490000 0 0 0 367410000 351320000 375260000 0 0 0 17336 270 16796 321933;321934;321935;321936;321937;321938;321939;321940;321941;321942;321943;321944;321945;321946;321947;321948;321949;321950;321951;321952;321953;321954;321955;321956;321957;321958 196885;196886;196887;196888;196889;196890;196891;196892;196893;196894;196895;196896;196897;196898;196899;196900;196901;196902;196903;196904;196905;196906;196907;196908 196903 24 QYQALFNLEGVDLEFRDEALDAIAK Unmodified 2867.4341 0.43413865 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 54.583 53.136 3 6.3448E-05 26094 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 80.786 75.733 375520000 53321000 0 47146000 0 0 0 15431000 17905000 0 0 0 0 57630000 56416000 35472000 0 0 0 42850000 49346000 0 0 0 0 17337 244 16797 321959;321960;321961;321962;321963;321964;321965;321966;321967 196909 196909 1 QYQALFNLEGVDLEFRDEALDAIAKK Unmodified 2995.5291 0.52910167 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 53.205 51.975 4 0.10241 18921 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 28.638 23.682 30989000 0 0 0 3136200 3282700 1995000 0 0 0 6628300 5797200 4041400 0 0 0 0 0 3768400 0 0 0 2339700 0 0 17338 244 16798 321968;321969;321970;321971;321972;321973;321974;321975 196910 196910 1 QYQNAEDTR Unmodified 1123.4894 0.48941511 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.724 11.28 2 0.00016386 2136 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 129.72 121.38 279660000 8024400 9086000 8995300 0 0 6291800 22299000 22081000 22934000 9225700 6772600 6763700 20239000 24780000 15186000 1912200 3558200 2037200 23944000 29377000 24145000 4684700 0 7324300 17339 1427 16799 321976;321977;321978;321979;321980;321981;321982;321983;321984;321985;321986;321987;321988;321989;321990;321991;321992;321993;321994;321995;321996;321997 196911;196912;196913;196914;196915;196916;196917;196918;196919;196920;196921;196922 196919 12 QYQPFEYYGHPQAER Unmodified 1911.854 0.85401105 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.414 24.325 3 5.2419E-07 11107 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 87.824 87.416 332820000 39608000 33872000 27136000 0 0 0 28919000 26467000 32227000 0 0 0 20553000 21779000 17811000 0 0 0 26598000 29604000 28242000 0 0 0 17340 1609 16800 321998;321999;322000;322001;322002;322003;322004;322005;322006;322007;322008;322009 196923;196924;196925;196926;196927;196928;196929;196930;196931;196932;196933;196934 196925 12 QYSELEEEWK Unmodified 1339.5932 0.59321148 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.645 28.367 2 0.00023186 13196 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.33 104.13 490420000 52273000 49079000 50484000 0 0 0 68509000 56204000 62713000 0 0 0 24021000 22199000 20650000 0 0 0 28242000 28797000 27245000 0 0 0 17341 1662 16801 322010;322011;322012;322013;322014;322015;322016;322017;322018;322019;322020;322021 196935;196936;196937;196938;196939;196940 196938 6 QYSELEEEWKAEK Unmodified 1667.7679 0.76788138 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 2 2 2 1 2 2 2 1 2 2 1 1 2 1 2 24.981 23.98 2;3 2.8551E-05 10861 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 89.663 86.405 305860000 26671000 27466000 31406000 0 1863200 0 38595000 37254000 40990000 531620 0 0 15881000 14473000 8971300 0 970100 0 20910000 19415000 20460000 0 0 0 17342 1662 16802 322022;322023;322024;322025;322026;322027;322028;322029;322030;322031;322032;322033;322034;322035;322036;322037;322038;322039;322040;322041;322042;322043;322044;322045;322046 196941;196942;196943;196944;196945;196946 196944 6 QYSLNAAQR Unmodified 1049.5254 0.52540669 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.024 15.647 2 0.0001114 5328 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.3 116.74 255840000 11831000 13161000 12808000 1297000 1220800 1127800 27798000 23046000 23838000 3200700 3010400 2751200 17577000 14984000 10740000 0 0 0 28359000 24874000 27343000 2406100 2037600 2431700 17343 804 16803 322047;322048;322049;322050;322051;322052;322053;322054;322055;322056;322057;322058;322059;322060;322061;322062;322063;322064;322065;322066;322067 196947;196948;196949;196950;196951;196952 196947 6 QYTTVVADTGDIAAMK Oxidation (M) 1698.8135 0.81345137 402 P0A870 talB Transaldolase B yes yes 0 1 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 2 1 1 2 1 1 1 1 2 28.909 27.621 2 5.5904E-08 13267 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.07 97.529 91142000 0 7449300 6324900 0 0 0 16318000 9542500 8871200 0 0 0 8165900 4846900 3716000 0 0 0 6199300 7864800 11843000 0 0 0 17344 402 16804 322068;322069;322070;322071;322072;322073;322074;322075;322076;322077;322078;322079;322080;322081 196953;196954;196955 196953 196 3 QYTTVVADTGDIAAMK Unmodified 1682.8185 0.81853675 402 P0A870 talB Transaldolase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 34.663 33.075 2;3 3.6537E-08 16139 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.55 136.86 8199000000 556000000 498650000 481320000 1477400 1959700 1687100 695540000 715500000 727010000 1737600 1235500 0 769580000 693570000 655500000 0 0 0 806180000 832430000 758480000 1099100 0 0 17345 402 16804 322082;322083;322084;322085;322086;322087;322088;322089;322090;322091;322092;322093;322094;322095;322096;322097;322098;322099;322100;322101;322102;322103;322104;322105;322106;322107;322108;322109 196956;196957;196958;196959;196960;196961;196962;196963;196964;196965;196966;196967;196968;196969;196970;196971;196972;196973;196974;196975;196976 196956 21 QYVAFASQR Unmodified 1068.5352 0.53524309 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.2 20.409 2 0.0038372 6440 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 80.165 72.972 50392000 0 0 0 1086100 1004900 1130600 3950500 3279000 3717700 4097700 3098800 3490700 2178300 1958500 2625400 0 0 0 3504800 3329900 4821400 2471700 2658400 1987700 17346 975 16805 322110;322111;322112;322113;322114;322115;322116;322117;322118;322119;322120;322121;322122;322123;322124;322125;322126;322127 196977;196978;196979 196978 3 QYVAYMEQNDR Unmodified 1415.614 0.6139637 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 21.178 21.57 2 9.8761E-05 6437 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 120.09 109.57 38738000 7078000 8579700 8164900 4470000 5408200 5036700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17347 76 16806 322128;322129;322130;322131;322132;322133 196980;196981;196982 196980 3 QYVQELSR Unmodified 1021.5193 0.51925868 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.44 17.153 2 0.016536 5711 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 68.383 55.175 94254000 9704200 7599300 8330300 2337700 1850100 1929500 6398400 5512400 6341000 0 0 1911500 4228800 5616600 4255700 0 0 0 6855600 9337500 9684900 0 803700 1556500 17348 1083 16807 322134;322135;322136;322137;322138;322139;322140;322141;322142;322143;322144;322145;322146;322147;322148;322149;322150;322151 196983 196983 1 QYYQQVDEQGNALWR Unmodified 1896.8755 0.87547477 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.347 32.884 2 2.3073E-45 15617 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 272.03 272.03 67569000 10193000 8330400 7018900 0 0 0 5023400 4237900 4457700 0 0 0 4394200 4882800 0 0 0 0 6121200 6802300 6107000 0 0 0 17349 1387 16808 322152;322153;322154;322155;322156;322157;322158;322159;322160;322161;322162 196984;196985;196986 196985 3 RAADTEDEAK Unmodified 1104.5047 0.50473083 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.0772 5.9592 2 3.1547E-05 942 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 147.2 111.9 99445000 9724000 10598000 14170000 0 104040 90827 8638000 7444300 8455800 0 0 0 6748800 5499200 6365900 0 0 0 7485000 6444500 7677300 0 0 0 17350 295 16809 322163;322164;322165;322166;322167;322168;322169;322170;322171;322172;322173;322174;322175;322176 196987;196988;196989;196990;196991;196992;196993;196994;196995 196988 9 RAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE Unmodified 3322.5913 0.59132059 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 1 1 2 2 2 55.091 54.036 3;4 1.0307E-25 21788 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 164.29 162.13 3211000000 0 10436000 9901700 0 0 0 0 0 0 275940000 168910000 142040000 0 0 0 611420000 776130000 597980000 14792000 0 7257900 194380000 201350000 200420000 17351 458 16810 322177;322178;322179;322180;322181;322182;322183;322184;322185;322186;322187;322188;322189;322190;322191;322192;322193;322194;322195;322196;322197;322198 196996;196997;196998;196999;197000;197001;197002;197003;197004;197005;197006;197007;197008;197009;197010;197011;197012;197013 197002 18 RAASEAVK Unmodified 830.46102 0.46101552 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 1 1 1 1 1 9.1269 9.4344 2 0.0015093 1914 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 110.81 71.589 379890000 67328000 156110000 77186000 0 0 0 0 0 0 12903000 9618600 9835400 0 0 0 702160 7549500 7386300 0 0 0 10761000 12671000 7839300 17352 373 16811 322199;322200;322201;322202;322203;322204;322205;322206;322207;322208;322209;322210;322211;322212 197014;197015;197016;197017;197018;197019;197020;197021;197022;197023;197024 197016 11 RAASEAVKDAALSCDQFFVNHR Unmodified 2491.2026 0.20263935 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.198 26.015 4 0.0030358 8032 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 54.658 51.649 33958000 0 0 0 3577300 0 0 0 0 0 3180200 4612700 3274100 0 0 0 4109400 3513200 4080900 0 0 0 3772900 0 3836800 17353 373 16812 322213;322214;322215;322216;322217;322218;322219;322220;322221 197025 197025 1 RAATILAEQLEAFVDLR Unmodified 1915.0527 0.052710858 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 7 6 5 1 1 1 11 15 13 1 1 1 11 7 9 54.202 53.359 2;3;4 1.2225E-49 21227 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 331.73 316.86 45460000000 4767400 0 4559400 16467000 17934000 21321000 0 10982000 0 2019500000 1706900000 1532100000 5739000 5428700 6018900 8047400000 11634000000 12861000000 7737500 5959500 7860200 2955200000 2309500000 2280100000 17354 383 16813 322222;322223;322224;322225;322226;322227;322228;322229;322230;322231;322232;322233;322234;322235;322236;322237;322238;322239;322240;322241;322242;322243;322244;322245;322246;322247;322248;322249;322250;322251;322252;322253;322254;322255;322256;322257;322258;322259;322260;322261;322262;322263;322264;322265;322266;322267;322268;322269;322270;322271;322272;322273;322274;322275;322276;322277;322278;322279;322280;322281;322282;322283;322284;322285;322286;322287;322288;322289;322290;322291;322292;322293;322294;322295;322296;322297;322298;322299;322300;322301;322302;322303;322304;322305;322306;322307;322308;322309;322310;322311;322312;322313;322314;322315;322316;322317;322318;322319;322320 197026;197027;197028;197029;197030;197031;197032;197033;197034;197035;197036;197037;197038;197039;197040;197041;197042;197043;197044;197045;197046;197047;197048;197049;197050;197051;197052;197053;197054;197055;197056;197057;197058;197059;197060;197061;197062;197063;197064;197065;197066;197067;197068;197069;197070;197071;197072;197073;197074;197075;197076;197077;197078;197079;197080;197081;197082;197083;197084;197085;197086;197087;197088;197089;197090;197091;197092;197093;197094;197095;197096;197097;197098;197099;197100;197101;197102;197103;197104;197105;197106;197107;197108;197109;197110;197111;197112;197113;197114;197115;197116;197117;197118;197119;197120;197121 197081 96 RAATILAEQLEAFVDLRDVR Unmodified 2285.2492 0.24917883 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 1 1 1 49.534 49.159 3;4 5.1557E-10 18740 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 114.72 106.43 91204000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28077000 24286000 21974000 0 0 0 6698000 5277200 4891800 17355 383 16814 322321;322322;322323;322324;322325;322326;322327;322328;322329;322330 197122;197123;197124;197125;197126 197122 4 RADAIFIEELR Unmodified 1331.7197 0.7197494 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 34.576 33.12 2;3 3.6102E-14 15194 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 211.64 154.83 4143900000 293290000 289460000 236090000 0 1977800 0 323470000 325140000 335340000 0 0 0 396940000 351420000 336890000 0 0 0 430620000 420760000 402500000 0 0 0 17356 86 16815 322331;322332;322333;322334;322335;322336;322337;322338;322339;322340;322341;322342;322343;322344;322345;322346;322347;322348;322349;322350;322351;322352;322353;322354;322355 197127;197128;197129;197130;197131;197132;197133;197134;197135;197136;197137;197138;197139;197140;197141;197142;197143;197144;197145;197146;197147;197148;197149;197150 197146 24 RADAIFIEELRK Unmodified 1459.8147 0.81471242 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.156 25.899 3 0.00030617 12144 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.169 76.624 1124400000 92645000 78296000 74891000 0 773980 792360 82573000 90894000 86910000 0 0 781410 92661000 92095000 85759000 0 0 0 103080000 129030000 106500000 3935100 2785300 0 17357 86 16816 322356;322357;322358;322359;322360;322361;322362;322363;322364;322365;322366;322367;322368;322369;322370;322371;322372 197151;197152;197153;197154;197155;197156;197157;197158;197159;197160;197161;197162 197151 12 RADDALWR Unmodified 1001.5043 0.50427732 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.42 17.868 2 9.1359E-05 5150 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 166.52 138 2013900000 6223400 5138700 5728000 3003100 2593300 2750300 249170000 243600000 245280000 219810000 180260000 170090000 84942000 72590000 83931000 24972000 18484000 17815000 86893000 94074000 95028000 35477000 32215000 33810000 17358 1088 16817 322373;322374;322375;322376;322377;322378;322379;322380;322381;322382;322383;322384;322385;322386;322387;322388;322389;322390;322391;322392;322393;322394;322395;322396 197163;197164;197165;197166;197167;197168;197169;197170;197171;197172;197173;197174;197175;197176;197177 197170 15 RADEATR Unmodified 817.40423 0.40422892 1181 P21499 rnr Ribonuclease R yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 6.0478 6.7804 2 0.0070501 1137 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.629 80.251 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17359 1181 16818 322397;322398;322399 197178;197179;197180 197180 3 RADGSGTSFVFTSYLAK Unmodified 1805.8948 0.89481323 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 1 1 2 2 3 1 1 1 3 2 2 2 1 38.829 37.196 2;3 1.1521E-10 17930 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 183 176.02 3278900000 0 0 3044700 2768200 0 3381500 379840000 358640000 389310000 8213700 2113900 0 364310000 288620000 334530000 12284000 6008000 6871900 372690000 382780000 351310000 0 8791000 3434300 17360 994 16819 322400;322401;322402;322403;322404;322405;322406;322407;322408;322409;322410;322411;322412;322413;322414;322415;322416;322417;322418;322419;322420;322421;322422;322423;322424;322425;322426;322427;322428;322429;322430;322431 197181;197182;197183;197184;197185;197186;197187;197188;197189;197190;197191;197192;197193;197194;197195;197196;197197;197198;197199;197200;197201;197202;197203 197194 23 RADKEGAASFYVVDTSDFGNSGNWR Unmodified 2748.2528 0.25282024 1829 P76177 ydgH Protein YdgH yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 37.594 36 4 0.060393 12623 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 35.246 35.033 40371000 0 0 0 4377800 4729700 5709700 0 0 0 0 5095300 5978300 0 0 0 1639300 0 2606900 0 0 0 4120900 2755700 3357400 17361 1829 16820 322432;322433;322434;322435;322436;322437;322438;322439;322440;322441 197204;197205;197206 197204 3 RADQIQWSAGIEPGDPR Unmodified 1894.9286 0.92857298 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 2 2 2 2 2 2 2 30.299 28.917 2;3 2.8103E-24 13134 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 215.51 206.07 10605000000 2737700000 2814100000 2724800000 6836700 7161400 5843700 379600000 378350000 376890000 0 0 0 128400000 127130000 139390000 0 0 0 256210000 256340000 266450000 0 0 0 17362 517 16821 322442;322443;322444;322445;322446;322447;322448;322449;322450;322451;322452;322453;322454;322455;322456;322457;322458;322459;322460;322461;322462;322463;322464;322465;322466;322467;322468;322469;322470;322471;322472;322473 197207;197208;197209;197210;197211;197212;197213;197214;197215;197216;197217;197218;197219;197220;197221;197222;197223;197224;197225;197226;197227;197228;197229;197230;197231;197232;197233;197234;197235;197236;197237;197238;197239;197240;197241;197242;197243 197228 36 RAEAAPAATGGGIPGMLPWPK Oxidation (M) 2063.0622 0.062229686 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 5 5 4 1 2 1 2 1 1 2 2 2 2 3 5 5 4 37.694 35.87 2;3 0.00010567 13561 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 73.448 69.954 490650000 5773500 3206100 3030100 76496000 77704000 35639000 7961500 11756000 2936900 9922900 3978100 1945400 6277700 7532700 0 0 0 0 12295000 11774000 13285000 72776000 64341000 62017000 17363 133 16822 322474;322475;322476;322477;322478;322479;322480;322481;322482;322483;322484;322485;322486;322487;322488;322489;322490;322491;322492;322493;322494;322495;322496;322497;322498;322499;322500;322501;322502;322503;322504;322505;322506;322507;322508;322509;322510;322511;322512;322513;322514;322515;322516;322517;322518;322519;322520;322521;322522;322523 197244;197245;197246;197247;197248;197249;197250;197251;197252;197253;197254;197255;197256;197257;197258;197259;197260;197261;197262;197263;197264;197265;197266;197267 197253 38 24 RAEAAPAATGGGIPGMLPWPK Unmodified 2047.0673 0.067315064 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 3 3 3 3 2 2 2 3 2 2 3 3 2 2 3 3 41.239 39.396 2;3;4 1.3236E-22 18317 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 191.78 186.89 11553000000 373420000 318810000 314080000 1615800000 1416200000 1544700000 356590000 331550000 353900000 137030000 107990000 118760000 212300000 201850000 199500000 0 0 0 378870000 415930000 403250000 216100000 1226200000 1310800000 17364 133 16822 322524;322525;322526;322527;322528;322529;322530;322531;322532;322533;322534;322535;322536;322537;322538;322539;322540;322541;322542;322543;322544;322545;322546;322547;322548;322549;322550;322551;322552;322553;322554;322555;322556;322557;322558;322559;322560;322561;322562;322563;322564;322565;322566;322567;322568;322569;322570;322571;322572;322573;322574;322575;322576;322577;322578 197268;197269;197270;197271;197272;197273;197274;197275;197276;197277;197278;197279;197280;197281;197282;197283;197284;197285;197286;197287;197288;197289;197290;197291;197292;197293;197294;197295;197296;197297;197298;197299;197300;197301;197302;197303;197304;197305;197306;197307;197308;197309;197310;197311;197312;197313;197314;197315;197316;197317;197318;197319 197317 51 RAEAEALGVPPDLIEDVLR Unmodified 2062.1059 0.10586864 153 P07023 tyrA T-protein;Chorismate mutase;Prephenate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.805 50.557 3 5.2662E-05 23572 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 78.794 70.705 128900000 7745400 11625000 9200000 0 0 0 13572000 10697000 10525000 0 0 0 9345600 8979700 8731800 0 0 0 11755000 13875000 12846000 0 0 0 17365 153 16823 322579;322580;322581;322582;322583;322584;322585;322586;322587;322588;322589;322590 197320;197321 197321 2 RAEAWATGLK Unmodified 1101.5931 0.59309232 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.772 17.177 2 5.8608E-05 6041 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 137.46 91.444 206540000 0 0 0 0 0 0 8738500 7257800 9233000 25034000 18723000 9303000 6323700 7421200 6067600 7733000 5004500 7221000 19623000 25403000 19033000 9482300 7905100 7034800 17366 75 16824 322591;322592;322593;322594;322595;322596;322597;322598;322599;322600;322601;322602;322603;322604;322605;322606;322607;322608 197322;197323;197324;197325;197326;197327;197328;197329;197330 197326 9 RAEDYLR Unmodified 921.46683 0.46682918 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 12.299 13.124 2 8.0494E-05 3530 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 176.41 121.65 1649400000 0 422760000 0 0 0 0 0 0 0 0 0 0 236480000 228440000 196760000 0 0 0 271640000 290190000 0 0 0 3137100 17367 508 16825 322609;322610;322611;322612;322613;322614;322615 197331;197332;197333;197334 197332 4 RAEGDGEGFIVIDDLVDTGGTAVAIR Unmodified 2645.3297 0.32967358 538 P0A9M5 gpt Xanthine phosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.902 51.493 3 8.081E-31 25159 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 190.59 187.12 835930000 52835000 49665000 49443000 0 0 0 65544000 61773000 57566000 0 0 0 77022000 78546000 67880000 0 0 0 90088000 87672000 97898000 0 0 0 17368 538 16826 322616;322617;322618;322619;322620;322621;322622;322623;322624;322625;322626;322627 197335;197336;197337;197338;197339;197340;197341;197342;197343;197344;197345;197346 197338 12 RAEITPANADTVTR Unmodified 1513.7849 0.78486885 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 14.066 14.934 2;3 1.8792E-35 4900 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 314.39 277.33 4362800000 489920000 517000000 503210000 1374000 2838400 1517600 332650000 389340000 312540000 0 0 0 226450000 228620000 228260000 0 0 0 370140000 382800000 376160000 0 0 0 17369 512 16827 322628;322629;322630;322631;322632;322633;322634;322635;322636;322637;322638;322639;322640;322641;322642;322643;322644;322645;322646;322647;322648;322649;322650;322651;322652;322653;322654 197347;197348;197349;197350;197351;197352;197353;197354;197355;197356;197357;197358;197359;197360;197361;197362;197363;197364;197365;197366;197367 197347 18 RAEITVVAINELADAAGMAHLLK Unmodified 2405.3101 0.31006453 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.109 51.67 3;4 0.00022271 25773 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 68.552 65.025 223080000 15466000 14382000 12819000 0 0 0 24324000 22359000 17762000 0 0 0 15619000 15748000 20782000 0 0 0 20062000 21005000 22752000 0 0 0 17370 505 16828 322655;322656;322657;322658;322659;322660;322661;322662;322663;322664;322665;322666;322667;322668;322669;322670;322671;322672;322673;322674;322675;322676;322677;322678 197368;197369;197370;197371;197372;197373;197374 197368 3 RAELEAK Unmodified 815.45012 0.45011648 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 2 4 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 8.3989 9.0137 2 0.00027331 1911 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 164.53 71.851 2537100000 229880000 171540000 200500000 0 42295000 37587000 203940000 174530000 204410000 70736000 54332000 55154000 75314000 0 80181000 52309000 52787000 56852000 190840000 222080000 198390000 60587000 53858000 48987000 17371 364 16829 322679;322680;322681;322682;322683;322684;322685;322686;322687;322688;322689;322690;322691;322692;322693;322694;322695;322696;322697;322698;322699;322700;322701;322702;322703;322704;322705;322706;322707;322708 197375;197376;197377;197378;197379;197380;197381;197382;197383;197384;197385;197386;197387;197388;197389;197390;197391;197392;197393;197394;197395;197396;197397;197398;197399;197400;197401 197386 27 RAENGEEPIKEHLLLTR Unmodified 2004.0752 0.075237214 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 19.392 19.77 3;4;5 5.593E-09 7154 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 124.84 123.15 1422500000 121390000 138160000 95060000 23486000 19999000 22545000 85501000 100320000 91058000 52683000 34281000 39219000 77670000 84130000 67063000 0 0 0 90480000 117960000 120950000 12563000 13813000 14204000 17372 899 16830 322709;322710;322711;322712;322713;322714;322715;322716;322717;322718;322719;322720;322721;322722;322723;322724;322725;322726;322727;322728;322729;322730;322731;322732;322733;322734;322735;322736;322737;322738;322739;322740;322741;322742;322743;322744;322745;322746;322747;322748;322749;322750;322751;322752;322753;322754;322755;322756;322757;322758;322759;322760;322761;322762;322763;322764;322765;322766;322767;322768;322769 197402;197403;197404;197405;197406;197407;197408;197409;197410;197411;197412;197413;197414;197415;197416;197417;197418;197419;197420;197421;197422;197423;197424;197425;197426;197427;197428 197425 27 RAENMLWHK Unmodified 1183.592 0.59204647 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 13.36 13.966 2;3 0.00029183 4278 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.136 85.999 3453200000 242950000 239780000 223300000 21368000 18786000 29459000 281550000 330560000 361890000 90262000 94687000 99481000 166440000 160330000 143420000 5642000 5908800 4080100 163030000 145280000 115390000 178390000 169980000 161260000 17373 548 16831 322770;322771;322772;322773;322774;322775;322776;322777;322778;322779;322780;322781;322782;322783;322784;322785;322786;322787;322788;322789;322790;322791;322792;322793;322794;322795;322796;322797;322798;322799;322800;322801;322802;322803;322804;322805;322806;322807;322808;322809;322810;322811 197429;197430;197431;197432;197433;197434;197435;197436;197437;197438;197439;197440;197441;197442;197443;197444;197445;197446;197447;197448;197449;197450;197451;197452;197453;197454;197455;197456;197457;197458;197459 197454 31 RAENMLWHK Oxidation (M) 1199.587 0.58696109 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 1 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.624 12.29 3 0.02608 3151 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 52.549 50.395 210200000 11625000 10786000 14142000 6943800 6485900 4914800 37703000 33609000 24049000 14225000 6997200 4314700 0 0 0 0 0 0 7252000 10457000 9181000 0 3964500 3550800 17374 548 16831 322812;322813;322814;322815;322816;322817;322818;322819;322820;322821;322822;322823;322824;322825;322826;322827;322828 197460;197461;197462 197462 337 3 RAEQAIWPADALPGIRPQFASK Unmodified 2421.2917 0.29171235 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 2 2 1 1 40.617 38.569 3;4 0.050129 15330 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 36.9 29.624 61159000 6450400 6224000 0 0 1235800 0 0 10275000 0 3370500 10495000 12783000 0 0 0 0 0 0 0 4878800 5447200 0 0 0 17375 1877 16832 322829;322830;322831;322832;322833;322834;322835;322836;322837;322838;322839 197463;197464;197465 197464 3 RAETVDGK Unmodified 874.45084 0.45084476 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 9.893 10.242 2 4.3072E-05 1786 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 174.16 34.07 211920000 0 0 130400 0 0 0 0 233090 0 14960000 9412100 11498000 0 0 0 0 0 0 0 0 0 57612000 46422000 71652000 17376 1067 16833 322840;322841;322842;322843;322844;322845;322846;322847;322848 197466;197467;197468;197469;197470;197471 197469 5 RAEYDQMWQHR Unmodified 1518.6786 0.67862964 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.819 16.635 3 0.078215 5808 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 36.417 30.924 564540000 48608000 61872000 41122000 0 0 0 105630000 109180000 103280000 0 0 0 16897000 13401000 18626000 0 0 0 17131000 15306000 13487000 0 0 0 17377 1440 16834 322849;322850;322851;322852;322853;322854;322855;322856;322857;322858;322859;322860 197472;197473 197472 0 RAEYHAR Unmodified 901.45185 0.45184781 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 5.0313 5.9288 2 0.0010914 1301 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 142.64 125.72 807500000 238930000 261400000 232810000 6800200 7296800 5842200 18533000 15043000 14918000 0 0 0 0 0 0 0 0 0 5921500 0 0 0 0 0 17378 921 16835 322861;322862;322863;322864;322865;322866;322867;322868;322869;322870 197474;197475;197476;197477;197478 197477 5 RAFIEENALK Unmodified 1189.6455 0.64552182 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 18.996 19.231 2 8.7987E-07 7331 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.88 115.29 337910000 0 0 0 0 0 0 0 0 108610000 0 0 0 0 0 0 13276000 7623600 5830400 50646000 52740000 48806000 16684000 16827000 16866000 17379 883 16836 322871;322872;322873;322874;322875;322876;322877;322878;322879;322880 197479;197480;197481;197482;197483;197484;197485;197486 197484 8 RAGAPFGPGANPMHGR Unmodified 1591.779 0.77901239 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 3 2 2 3 3 3 2 2 2 3 3 3 3 2 2 3 3 3 1 2 2 14.715 15.303 2;3;4 8.2614E-41 4611 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 284.47 265.34 4245800000 112390000 111090000 140610000 8989600 10550000 8773600 666420000 662360000 543590000 11976000 11803000 10721000 331220000 429700000 386790000 19310000 16757000 13574000 238480000 262080000 234550000 2575600 8031000 3446700 17380 212 16837 322881;322882;322883;322884;322885;322886;322887;322888;322889;322890;322891;322892;322893;322894;322895;322896;322897;322898;322899;322900;322901;322902;322903;322904;322905;322906;322907;322908;322909;322910;322911;322912;322913;322914;322915;322916;322917;322918;322919;322920;322921;322922;322923;322924;322925;322926;322927;322928;322929;322930;322931;322932;322933;322934;322935;322936;322937;322938;322939;322940;322941 197487;197488;197489;197490;197491;197492;197493;197494;197495;197496;197497;197498;197499;197500;197501;197502;197503;197504;197505;197506;197507;197508;197509;197510;197511;197512;197513;197514;197515;197516;197517;197518;197519;197520;197521;197522;197523;197524;197525;197526;197527;197528;197529;197530;197531;197532;197533 197533 45 RAGDFMLSR Unmodified 1051.5233 0.5232982 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 18.475 19.079 2 0.02325 7215 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 63.397 52.328 80052000 3783900 0 0 0 0 0 8655900 12368000 11373000 0 0 0 9437700 6902000 5223600 0 0 0 8518700 7254600 6534600 0 0 0 17381 1961 16838 322942;322943;322944;322945;322946;322947;322948;322949;322950;322951 197534 197534 1 RAGDVIPQVVNVVLSERPEDTR Unmodified 2448.3085 0.30848463 1102 P15042 ligA DNA ligase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 44.594 43.532 4 0.0079899 15272 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 43.497 42.287 53841000 6519600 0 0 0 0 0 7645400 4456100 4670900 0 0 0 0 0 4683200 2624600 3108400 3396000 4202600 8281200 4253200 0 0 0 17382 1102 16839 322952;322953;322954;322955;322956;322957;322958;322959;322960;322961;322962 197535;197536 197536 2 RAGEITAMAHTR Unmodified 1312.667 0.66700232 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.676 12.509 3 0.013826 3431 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 50.641 40.688 240900000 33023000 27824000 22295000 0 0 0 28604000 21312000 24688000 0 0 0 12484000 9308000 11293000 0 0 0 16834000 15855000 17377000 0 0 0 17383 1100 16840 322963;322964;322965;322966;322967;322968;322969;322970;322971;322972;322973;322974 197537 197537 1 RALEIEEMQLK Unmodified 1358.7228 0.72278587 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 27.217 26.097 2;3 2.9166E-07 8177 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 163.64 123.29 291310000 0 0 0 0 0 0 0 0 0 8647500 18280000 17006000 0 0 0 65663000 49330000 57175000 0 0 0 26448000 21549000 27211000 17384 463 16841 322975;322976;322977;322978;322979;322980;322981;322982;322983;322984;322985;322986;322987;322988;322989;322990;322991 197538;197539;197540;197541;197542;197543;197544;197545;197546;197547;197548;197549;197550;197551;197552 197541 15 RALEIEEMQLKQAK Unmodified 1685.9134 0.91344018 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 19.902 20.123 4 0.16348 5859 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 16.265 10.233 14575000 0 0 0 3787100 3670200 3201900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1773600 994450 1147500 17385 463 16842 322992;322993;322994;322995;322996;322997 197553 197553 1 RALENGEQVK Unmodified 1142.6044 0.60438529 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 1 By MS/MS 1 11.297 11.151 2 0.0076758 2187 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 75.378 43.444 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17386 290 16843 322998 197554 197554 1 RALRGDVASR Unmodified 1099.621 0.62103841 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 2 2 10.848 10.77 2;3 5.6457E-05 2023 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 152.37 102.24 194520000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57551000 64559000 72414000 0 0 0 0 0 0 17387 1089 16844 322999;323000;323001;323002;323003;323004 197555;197556;197557;197558 197555 4 RAMAWEEHDE Unmodified 1272.5193 0.51933503 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 14.016 14.905 2 0.073491 4848 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 46.891 46.498 24267000 0 0 0 0 0 0 3414800 0 1925700 0 0 0 3127000 4259900 0 0 0 0 4616900 4082000 2840900 0 0 0 17388 239 16845 323005;323006;323007;323008;323009;323010;323011 197559;197560 197559 2 RAMEYGAENAR Unmodified 1266.5775 0.57751861 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 1 By matching By MS/MS 1 1 11.3 12.226 2 0.0071976 2364 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 65.347 33.412 5020000 0 0 1972400 0 0 3047700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17389 235 16846 323012;323013 197561 197561 1 RANDIALK Unmodified 899.51886 0.51886475 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.483 11.833 2 0.004893 3414 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.142 31.965 279280000 234560000 0 0 1426600 2302900 0 0 0 0 2050400 0 1319700 0 0 0 15061000 1578100 8850200 0 0 0 4583000 5452800 2096400 17390 339 16847 323014;323015;323016;323017;323018;323019;323020;323021;323022;323023;323024 197562 197562 1 RANVSTTTVSHVINK Unmodified 1625.8849 0.88491725 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.712 13.661 3 7.3146E-09 2991 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 142.45 138.83 141790000 0 11547000 16401000 7399100 7065500 11131000 0 0 0 0 0 0 17756000 16184000 9341400 0 0 0 12848000 19767000 12347000 0 0 0 17391 740 16848 323025;323026;323027;323028;323029;323030;323031;323032;323033;323034;323035 197563;197564;197565 197563 3 RAPEDLPSAPPLVHTSVR Unmodified 1941.0432 0.043208804 2001 yes yes 0 0 1 By MS/MS By matching By matching 2 1 1 20.438 20.602 5 0.16771 8347 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 3.3884 0.33541 51980000 0 0 0 0 0 0 30473000 0 12868000 0 0 0 8639000 0 0 0 0 0 0 0 0 0 0 0 + 17392 2001 16849 323036;323037;323038;323039 197566 197566 1 RAQRPAK Unmodified 825.49332 0.4933187 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.6395 6.2593 2 0.0188 1388 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 103.28 103.28 670120000 41126000 37131000 41334000 1193000 1142600 966910 0 0 0 7225300 8996700 8638100 38613000 29658000 24473000 96567000 78110000 58328000 67593000 68478000 58281000 2264500 0 0 17393 728 16850 323040;323041;323042;323043;323044;323045;323046;323047;323048;323049;323050;323051;323052;323053;323054;323055;323056;323057;323058 197567;197568;197569;197570;197571 197568 5 RAQSVVDYLISK Unmodified 1377.7616 0.76161421 480 P0A910 ompA Outer membrane protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 32.446 31.048 2;3 5.3317E-08 11939 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 158.05 125.73 3034500000 119500000 95254000 104430000 64678000 57708000 54000000 120190000 102010000 99425000 134330000 131150000 131300000 170440000 152570000 166070000 36267000 26892000 37793000 317160000 312190000 310570000 103110000 99736000 87685000 17394 480 16851 323059;323060;323061;323062;323063;323064;323065;323066;323067;323068;323069;323070;323071;323072;323073;323074;323075;323076;323077;323078;323079;323080;323081;323082;323083;323084;323085;323086;323087;323088;323089;323090;323091;323092;323093;323094;323095;323096;323097;323098;323099;323100;323101;323102;323103;323104;323105;323106 197572;197573;197574;197575;197576;197577;197578;197579;197580;197581;197582;197583;197584;197585;197586;197587;197588;197589;197590;197591;197592;197593;197594;197595;197596;197597;197598;197599;197600;197601;197602;197603;197604;197605;197606;197607;197608;197609;197610;197611;197612;197613;197614;197615;197616;197617;197618;197619 197582 47 RAQVAELAR Unmodified 1012.5778 0.57777661 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 11.741 12.558 2 5.7291E-12 3256 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 174.41 94.938 509160000 0 0 0 1136000 0 0 175640000 159740000 172650000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17395 299 16852 323107;323108;323109;323110;323111;323112;323113;323114;323115;323116 197620;197621;197622;197623;197624;197625;197626;197627;197628 197627 9 RATITLR Unmodified 829.51339 0.51338544 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.327 13.08 2 0.00088413 3824 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 147.04 81.775 1493900000 139340000 120270000 111850000 1734500 1374000 0 103670000 101310000 109420000 2064100 1432600 1537500 147870000 130140000 113390000 0 0 0 149580000 137130000 121830000 0 0 0 17396 161 16853 323117;323118;323119;323120;323121;323122;323123;323124;323125;323126;323127;323128;323129;323130;323131;323132;323133 197629;197630;197631;197632 197629 4 RAVEGTPFECLK Unmodified 1405.7024 0.70238478 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 2 2 2 2 3 3 3 2 2 2 3 3 3 2 2 2 22.6 22.013 2;3 1.2282E-08 9637 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 194.48 183.32 2419100000 316420000 301610000 274430000 12398000 11973000 12830000 93118000 91153000 93122000 19740000 21114000 23525000 145840000 109350000 112210000 26517000 18224000 16717000 228700000 213510000 207770000 21361000 26430000 21078000 17397 349 16854 323134;323135;323136;323137;323138;323139;323140;323141;323142;323143;323144;323145;323146;323147;323148;323149;323150;323151;323152;323153;323154;323155;323156;323157;323158;323159;323160;323161;323162;323163;323164;323165;323166;323167;323168;323169;323170;323171;323172;323173;323174;323175;323176;323177;323178;323179;323180;323181;323182;323183;323184;323185;323186;323187;323188;323189;323190 197633;197634;197635;197636;197637;197638;197639;197640;197641;197642;197643;197644;197645;197646;197647;197648;197649;197650;197651;197652;197653;197654;197655;197656;197657;197658;197659;197660;197661;197662;197663;197664;197665;197666 197643 34 RAVEGTPFECLKDAFVGPTLIAYSMEHPGAAAR Unmodified 3560.7544 0.75444371 349 P0A7J3 rplJ 50S ribosomal protein L10 yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 51.401 50.227 5 2.0046E-07 18204 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 77.733 77.245 38640000 0 0 0 4583000 5165200 4744300 0 0 0 0 3272100 0 0 0 0 0 6937500 0 0 0 0 4292900 5354900 4289500 17398 349 16855 323191;323192;323193;323194;323195;323196;323197;323198 197667;197668 197667 2 RAVIESENSAER Unmodified 1359.6743 0.67425577 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 2 2 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 11.246 11.843 2;3 3.409E-12 2988 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 191.79 188.46 1775200000 239900000 193690000 220300000 2393200 3766200 2183300 119860000 112080000 56156000 13011000 9173500 10720000 115700000 107870000 90646000 9655600 8428100 8072300 146330000 144750000 139740000 5715800 7527600 7521300 17399 990 16856 323199;323200;323201;323202;323203;323204;323205;323206;323207;323208;323209;323210;323211;323212;323213;323214;323215;323216;323217;323218;323219;323220;323221;323222;323223;323224;323225;323226;323227;323228;323229;323230;323231;323232;323233;323234;323235;323236;323237;323238;323239;323240;323241;323242;323243 197669;197670;197671;197672;197673;197674;197675;197676;197677;197678;197679;197680;197681;197682;197683;197684;197685;197686;197687;197688;197689;197690;197691 197685 23 RAVIESENSAERDQLLENLQEGMEVK Unmodified 2986.4666 0.46657777 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 1 2 2 2 38.174 36.48 3;4 2.0859E-41 13177 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 222.47 216.11 1039900000 52034000 48881000 57466000 31279000 32761000 29953000 20281000 26740000 24615000 68621000 59717000 61524000 28191000 25325000 20723000 50960000 59375000 50699000 47367000 39154000 28348000 57265000 69617000 48988000 17400 990 16857 323244;323245;323246;323247;323248;323249;323250;323251;323252;323253;323254;323255;323256;323257;323258;323259;323260;323261;323262;323263;323264;323265;323266;323267;323268;323269;323270;323271;323272;323273;323274;323275;323276;323277;323278;323279;323280;323281;323282;323283;323284;323285;323286;323287;323288 197692;197693;197694;197695;197696;197697;197698;197699;197700;197701;197702;197703;197704;197705;197706;197707;197708;197709;197710;197711;197712;197713;197714;197715;197716;197717;197718;197719;197720;197721;197722;197723 197693 31 RAVQNAMR Unmodified 944.49742 0.4974178 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 5.1171 6.2044 2 0.13408 1021 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 47.743 4.5583 12426000 0 0 0 3926400 4498100 4001700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17401 374 16858 323289;323290;323291 197724 197724 1 RAVTDSDEPPVVR Unmodified 1439.7369 0.73685603 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 14.27 15.156 3 0.011276 4756 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 49.929 27.883 11642000 0 0 0 0 0 0 0 0 0 0 0 0 3664300 4172300 0 0 0 0 3805200 0 0 0 0 0 17402 57 16859 323292;323293;323294;323295 197725;197726;197727;197728 197727 3 RCEVACPSDVK Unmodified 1319.5962 0.59620515 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.708 12.308 2 0.00025846 2733 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 103.7 63.699 101290000 0 0 0 0 0 0 17376000 20052000 20148000 5852200 4619900 5312200 7248700 7606400 6981300 1357100 0 0 4735400 0 0 0 0 0 17403 500 16860 323296;323297;323298;323299;323300;323301;323302;323303;323304;323305;323306 197729;197730;197731 197729 3 RCPFCDVAHGR Unmodified 1373.6081 0.60810724 1628 P60716 lipA Lipoyl synthase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.437 13.268 3 0.13696 3794 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 21.039 18.505 94062000 9280800 7999900 8694100 0 0 0 1925700 8440400 9744700 0 0 0 10098000 8600200 9951200 0 0 0 0 11199000 8127800 0 0 0 17404 1628 16861 323307;323308;323309;323310;323311;323312;323313;323314;323315;323316;323317 197732 197732 0 RCPFCDVAHGRPVAPDANEPVK Unmodified 2491.1849 0.18488079 1628 P60716 lipA Lipoyl synthase yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 2 2 2 3 1 1 1 3 3 2 2 3 2 3 3 4 19.109 19.538 3;4;5 2.5977E-10 7462 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.99 120.95 816110000 74696000 77825000 46195000 17453000 18262000 14930000 35375000 68119000 52559000 4451400 4101000 3009000 29217000 53770000 33091000 0 0 0 48954000 75053000 50963000 29836000 40867000 37384000 17405 1628 16862 323318;323319;323320;323321;323322;323323;323324;323325;323326;323327;323328;323329;323330;323331;323332;323333;323334;323335;323336;323337;323338;323339;323340;323341;323342;323343;323344;323345;323346;323347;323348;323349;323350;323351;323352;323353;323354;323355;323356;323357;323358;323359;323360;323361;323362;323363;323364;323365;323366;323367;323368 197733;197734;197735;197736;197737;197738;197739;197740;197741;197742;197743;197744;197745;197746;197747;197748;197749;197750;197751;197752;197753;197754;197755;197756;197757;197758;197759 197742 27 RCPLVIDYLIDLATR Unmodified 1816.9869 0.98693948 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.847 53.536 3 7.797E-12 21427 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 140.84 130.92 200390000 6609400 5254800 4487200 5409600 6388100 4375700 6014700 4941700 4821400 5734500 6864900 9043700 6814400 7049600 4744800 0 5217900 4860300 20000000 18162000 14129000 16087000 14909000 18470000 17406 215 16863 323369;323370;323371;323372;323373;323374;323375;323376;323377;323378;323379;323380;323381;323382;323383;323384;323385;323386;323387;323388;323389;323390;323391 197760;197761;197762;197763;197764;197765;197766;197767;197768 197763 9 RDALLENVTVR Unmodified 1284.715 0.71499837 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 23.656 22.901 2;3 5.2387E-16 9883 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 246.08 205.2 371680000 53208000 49386000 38811000 0 0 0 28392000 28812000 25814000 0 0 0 22090000 21512000 23935000 0 0 0 28171000 25521000 26031000 0 0 0 17407 1195 16864 323392;323393;323394;323395;323396;323397;323398;323399;323400;323401;323402;323403;323404;323405;323406;323407;323408;323409;323410;323411;323412;323413;323414;323415 197769;197770;197771;197772;197773;197774;197775;197776;197777;197778;197779 197774 10 RDDAPLR Unmodified 841.44061 0.44061443 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.995 11.651 2 0.1681 2753 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 47.657 15.702 67981000 0 0 0 0 0 0 0 4807000 0 0 0 0 4004300 0 13455000 0 0 0 0 19837000 5108900 6853400 7592700 6322800 17408 111 16865 323416;323417;323418;323419;323420;323421;323422;323423 197780 197780 1 RDDASREETAHK Unmodified 1413.6597 0.65966834 836 P0AE63 chaB Cation transport regulator ChaB yes yes 0 0 2 By matching By MS/MS 1 1 4.0951 4.9756 4 0.15587 804 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 19.604 16.289 11835000 0 0 0 0 0 0 0 6144900 5690600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17409 836 16866 323424;323425 197781 197781 0 RDDDSYDEDVEDDEGVGEVR Unmodified 2312.9153 0.9152865 1882 P77173 zipA Cell division protein ZipA yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.981 23.875 3 3.5567E-15 10688 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 153.36 153.36 139560000 0 5965400 10186000 1825500 2280700 2219400 10887000 10607000 11398000 6938800 4817700 5387900 9008100 6769900 8347500 0 0 0 14589000 9397300 13350000 0 2614100 2967400 17410 1882 16867 323426;323427;323428;323429;323430;323431;323432;323433;323434;323435;323436;323437;323438;323439;323440;323441;323442;323443;323444 197782;197783;197784;197785;197786 197784 4 RDDEVIVLTGK Unmodified 1243.6772 0.67721588 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 2 1 2 1 1 1 22.625 22.132 2 1.4506E-05 9725 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 145.46 113.96 2801800000 370140000 337510000 328160000 0 2840100 2915600 120330000 142980000 137980000 8216900 11960000 7394300 191760000 145930000 142130000 5251300 6064700 0 286610000 257450000 269990000 8402300 8699900 9073500 17411 1625 16868 323445;323446;323447;323448;323449;323450;323451;323452;323453;323454;323455;323456;323457;323458;323459;323460;323461;323462;323463;323464;323465;323466;323467;323468;323469;323470;323471;323472 197787;197788;197789;197790;197791;197792;197793;197794;197795;197796;197797;197798;197799;197800;197801;197802;197803;197804;197805;197806;197807;197808;197809 197793 23 RDDSTGR Unmodified 805.36784 0.36784341 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 3.7602 4.5885 2 0.019917 698 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 81.296 64.369 5274500 1837900 1730700 1462400 0 0 0 0 0 0 0 0 0 0 0 243560 0 0 0 0 0 0 0 0 0 17412 544 16869 323473;323474;323475;323476 197810;197811 197811 2 RDDVTPMAMGGNK Unmodified 1390.6333 0.63331893 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 1 15.348 16.186 2;3 1.542E-06 5587 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 134.49 123.73 84134000 15608000 17078000 16326000 0 0 0 0 8461000 0 0 0 0 2920500 5440900 4450200 0 0 0 7889200 2959300 3001200 0 0 0 17413 1850 16870 323477;323478;323479;323480;323481;323482;323483;323484;323485;323486;323487;323488;323489;323490;323491;323492 197812;197813;197814;197815;197816 197813 4 RDDVTPMAMGGNKLR Unmodified 1659.8185 0.81849394 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 18.029 18.523 4 0.16784 6854 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 12.555 8.1638 93948000 0 0 0 0 0 0 17143000 20455000 16844000 0 0 0 0 0 0 0 0 0 14180000 14171000 11155000 0 0 0 17414 1850 16871 323493;323494;323495;323496;323497;323498 197817 197817 1 RDEDGYYWITGR Unmodified 1529.6899 0.68990583 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 32.555 31.217 2;3 7.6215E-17 14785 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 213.84 203.84 1558900000 521580000 493170000 507120000 1203500 1374200 1230700 3343200 3709800 4084600 0 0 0 2459800 2572100 4186100 0 0 0 6308200 0 6575200 0 0 0 17415 1305 16872 323499;323500;323501;323502;323503;323504;323505;323506;323507;323508;323509;323510;323511;323512;323513;323514;323515 197818;197819;197820;197821;197822;197823 197819 6 RDEENMPGSR Unmodified 1189.5146 0.51458401 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.605 11.421 2 2.2854E-12 2691 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 215.72 194.19 293840000 60816000 51159000 43814000 0 0 0 20049000 18900000 24969000 0 0 0 10888000 12339000 11814000 0 0 0 14462000 14856000 9772900 0 0 0 17416 219 16873 323516;323517;323518;323519;323520;323521;323522;323523;323524;323525;323526;323527 197824;197825;197826;197827;197828;197829;197830;197831;197832;197833;197834;197835 197831 12 RDELHAQLSNNR Unmodified 1451.7229 0.7229373 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 2 2 1 2 2 2 11.64 12.413 2;3 8.1413E-07 3362 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 153.63 118.12 155880000 13066000 6074500 9197000 0 0 0 17618000 12237000 15301000 2261600 2349100 0 11910000 11741000 3996400 0 0 0 17541000 17083000 15504000 0 0 0 17417 1197 16874 323528;323529;323530;323531;323532;323533;323534;323535;323536;323537;323538;323539;323540;323541;323542;323543;323544;323545;323546;323547;323548;323549;323550 197836;197837;197838;197839 197837 4 RDEQNLELVLR Unmodified 1383.747 0.74702678 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 28.148 26.781 2;3 5.506E-21 12340 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 247.96 202.87 735930000 43840000 47319000 36366000 0 0 0 38932000 37727000 40763000 1738300 2709700 3139600 48961000 39663000 28831000 0 0 0 67110000 51164000 56480000 62806000 61648000 66734000 17418 1433 16875 323551;323552;323553;323554;323555;323556;323557;323558;323559;323560;323561;323562;323563;323564;323565;323566;323567;323568;323569;323570;323571;323572;323573;323574;323575;323576;323577;323578;323579;323580;323581;323582;323583;323584;323585 197840;197841;197842;197843;197844;197845;197846;197847;197848;197849;197850;197851;197852;197853;197854;197855;197856;197857;197858;197859;197860;197861;197862;197863 197850 24 RDEVEEAWK Unmodified 1160.5462 0.54620171 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 2 1 14.986 15.796 2 1.333E-07 5449 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 182.39 162.88 1536500000 98667000 109170000 85338000 217930 0 0 194990000 153520000 152120000 0 0 0 118160000 110570000 122970000 0 0 0 138190000 132260000 120370000 0 0 0 17419 702 16876 323586;323587;323588;323589;323590;323591;323592;323593;323594;323595;323596;323597;323598;323599;323600 197864;197865;197866;197867;197868;197869;197870;197871;197872;197873 197864 10 RDFSEEEIIAR Unmodified 1363.6732 0.67319314 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching 2 2 2 1 23.29 22.758 2;3 0.00015532 9690 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 115.29 96.975 288070000 96991000 93614000 96985000 0 0 477700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17420 1173 16877 323601;323602;323603;323604;323605;323606;323607 197874;197875;197876 197875 1 RDGGFAEYIVVK Unmodified 1352.7089 0.70885036 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 31.473 30.116 2;3 1.9756E-05 14168 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.75 108.91 302750000 59100000 51008000 53436000 0 0 0 19730000 23852000 27840000 0 0 0 9230600 7574500 8205800 0 0 0 15723000 13418000 13637000 0 0 0 17421 553 16878 323608;323609;323610;323611;323612;323613;323614;323615;323616;323617;323618;323619;323620;323621;323622;323623;323624;323625;323626;323627;323628;323629;323630;323631 197877;197878;197879;197880;197881;197882;197883;197884;197885 197881 9 RDGLEDYIR Unmodified 1135.5622 0.56218613 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 23.721 22.905 3 0.0001994 9549 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 96.143 91.599 116870000 0 0 0 0 0 0 15540000 14980000 17886000 0 0 0 14023000 12856000 8897200 0 0 0 11174000 10079000 11439000 0 0 0 17422 239 16879 323632;323633;323634;323635;323636;323637;323638;323639;323640 197886;197887;197888;197889;197890;197891 197889 6 RDGSTER Unmodified 819.38349 0.38349348 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 3.4126 4.2934 2 0.047495 688 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.252 48.325 20430000 2074200 2190900 1680700 0 0 0 0 0 0 0 0 0 1006900 1041900 767230 0 0 0 3334800 3652500 4681200 0 0 0 17423 29 16880 323641;323642;323643;323644;323645;323646;323647;323648;323649 197892;197893;197894;197895 197894 4 RDLEEFAMSYEESLKEESDSVFMR Unmodified 2926.3001 0.30008929 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 2 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 1 2 1 51.852 50.579 3;4 9.3477E-08 24747 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.11 111.04 160070000 28968000 30475000 26754000 7297600 6613100 7263500 8978400 16407000 14771000 0 0 0 0 0 3738300 0 0 0 6578900 2220800 0 0 0 0 17424 613 16881 323650;323651;323652;323653;323654;323655;323656;323657;323658;323659;323660;323661;323662;323663;323664;323665;323666;323667;323668;323669;323670 197896;197897;197898;197899 197899 4 RDLGSLIFIDMR Unmodified 1434.7653 0.76531938 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.255 45.865 3 3.3852E-05 22382 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.53 95.812 195130000 11331000 9528400 8527400 0 0 0 15527000 13273000 18357000 0 0 0 17974000 17493000 20308000 0 0 0 21932000 20126000 20758000 0 0 0 17425 1189 16882 323671;323672;323673;323674;323675;323676;323677;323678;323679;323680;323681;323682 197900;197901;197902;197903;197904;197905;197906;197907;197908;197909;197910;197911 197903 12 RDLIVTIGK Unmodified 1013.6233 0.62332982 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.157 21.903 2 0.0013564 7524 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 93.649 71.518 88233000 5622400 7024600 2938000 1031000 1363000 1230800 5834900 8911100 8058600 7306700 5602200 4963600 3310700 2758800 1840700 1067300 936950 682050 4519900 4389500 3969600 0 2785800 2085100 17426 1877 16883 323683;323684;323685;323686;323687;323688;323689;323690;323691;323692;323693;323694;323695;323696;323697;323698;323699;323700;323701;323702;323703;323704;323705 197912;197913 197912 2 RDPEHIYQQVSK Unmodified 1498.7528 0.75284044 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 12.736 13.65 3 0.14977 3816 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 26.627 10.489 56982000 0 15962000 19649000 0 0 0 0 0 0 0 0 0 6949200 6971000 7451100 0 0 0 0 0 0 0 0 0 17427 1355 16884 323706;323707;323708;323709;323710 197914 197914 0 RDPNQTEFAQAVR Unmodified 1530.7539 0.75390307 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 16.489 17.238 2;3 9.6925E-24 6029 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 230.81 202.61 503880000 127340000 116590000 118640000 0 0 0 28414000 25656000 21815000 0 0 0 10048000 6206500 5359200 0 0 0 14264000 15147000 14407000 0 0 0 17428 26 16885 323711;323712;323713;323714;323715;323716;323717;323718;323719;323720;323721;323722;323723;323724;323725;323726;323727;323728;323729;323730;323731;323732;323733 197915;197916;197917;197918;197919;197920;197921;197922;197923;197924;197925;197926;197927 197921 12 RDPNVQMVPER Unmodified 1339.6667 0.66666797 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 14.847 15.798 3 0.097438 5001 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 26.711 18.956 9124100 0 0 0 0 0 0 0 0 0 0 0 0 0 3074500 3275500 0 0 0 0 2774100 0 0 0 0 17429 180 16886 323734;323735;323736 197928;197929 197929 0 RDPQEAER Unmodified 999.47337 0.47337112 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.185 7.7626 2 0.00067032 1805 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 133.86 112.32 383730000 33427000 38671000 31088000 0 1403100 0 15136000 20775000 22025000 11231000 10810000 11947000 18516000 22870000 20799000 24005000 27395000 27758000 13437000 14038000 11441000 3894500 0 3066300 17430 297 16887 323737;323738;323739;323740;323741;323742;323743;323744;323745;323746;323747;323748;323749;323750;323751;323752;323753;323754;323755;323756;323757 197930;197931;197932;197933;197934;197935;197936;197937;197938;197939;197940;197941;197942;197943 197932 14 RDQLVGK Unmodified 814.4661 0.4661009 1720 P68206 yjbJ UPF0337 protein YjbJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.342 11.157 2 0.0032064 2541 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.65 68.582 1463000000 342940000 316740000 299170000 0 0 0 125030000 115730000 120830000 0 0 0 23699000 17241000 18967000 0 0 0 30183000 25884000 26604000 0 0 0 17431 1720 16888 323758;323759;323760;323761;323762;323763;323764;323765;323766;323767;323768;323769 197944;197945;197946;197947;197948;197949 197949 6 RDQSNLSPAQYLK Unmodified 1518.7791 0.77905519 1674 P64476 ydiH Uncharacterized protein YdiH yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 2 2 2 1 2 1 2 1 1 23.644 22.674 2;3 0.028569 7946 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 51.092 42.874 88728000 5413900 5873700 10865000 1363200 1139200 2686000 15428000 15474000 8069500 7544200 3865300 6788000 0 2376400 1840600 0 0 0 0 0 0 0 0 0 17432 1674 16889 323770;323771;323772;323773;323774;323775;323776;323777;323778;323779;323780;323781;323782;323783;323784;323785;323786;323787;323788;323789 197950;197951;197952 197951 2 RDQTYLYVEK Unmodified 1313.6616 0.66156582 627 P0AB43 ycgL Protein YcgL yes yes 0 0 1 By MS/MS 1 17.576 18.274 2 0.00046936 6660 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 90.108 65.185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17433 627 16890 323790 197953 197953 1 RDVFIDLVCYR Unmodified 1454.734 0.73401926 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 40.279 38.682 3 0.029579 17927 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 42.809 34.21 50344000 4465900 0 3779900 194070 0 0 0 3165900 0 0 0 0 4493900 3891500 4006400 0 0 0 9022100 9392000 7931900 0 0 0 17434 937 16891 323791;323792;323793;323794;323795;323796;323797;323798;323799;323800 197954;197955 197955 0 RDVRPPAGWEEPGASNNSGDNGSPK Unmodified 2593.1906 0.19055434 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 1 1 2 2 1 1 2 2 17.826 18.259 3;4 6.4057E-05 6876 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.593 82.109 197390000 0 0 0 8220500 7996600 9077300 11275000 14447000 14484000 16067000 12756000 12682000 4392100 11491000 6694600 0 2435600 2856500 9088900 11388000 8305300 7280800 14151000 12298000 17435 595 16892 323801;323802;323803;323804;323805;323806;323807;323808;323809;323810;323811;323812;323813;323814;323815;323816;323817;323818;323819;323820;323821;323822;323823;323824;323825;323826;323827;323828;323829;323830;323831;323832;323833;323834;323835 197956;197957;197958;197959;197960;197961;197962;197963;197964;197965;197966;197967;197968;197969 197963 14 RDVVSFLGASYFR Unmodified 1515.7834 0.78341229 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 42.721 41.032 3 2.2682E-07 19907 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 116.98 114.35 121520000 8264900 6976700 0 0 0 0 12196000 12097000 9115100 0 0 0 11731000 10945000 9070700 0 0 0 15326000 11609000 14192000 0 0 0 17436 1548 16893 323836;323837;323838;323839;323840;323841;323842;323843;323844;323845;323846 197970;197971;197972;197973;197974 197972 5 RDWYVVDATGK Unmodified 1308.6463 0.64625011 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 25.28 24.28 2;3 1.3621E-07 10342 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 172.56 157.41 476610000 56478000 67322000 47724000 5113400 3885300 4843500 15132000 15572000 16495000 6989900 6154700 5973100 25966000 23771000 19157000 6381900 3145800 3007200 39928000 36482000 41429000 14704000 6094700 4859700 17437 569 16894 323847;323848;323849;323850;323851;323852;323853;323854;323855;323856;323857;323858;323859;323860;323861;323862;323863;323864;323865;323866;323867;323868;323869;323870;323871;323872 197975;197976;197977;197978;197979;197980;197981;197982;197983;197984;197985;197986;197987;197988;197989;197990;197991 197989 16 REAEESAKR Unmodified 1074.5418 0.54178503 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 2 By matching By matching By MS/MS 1 1 1 9.4067 9.3619 3 0.022529 1610 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 51.268 47.696 7884100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1515500 3239800 3128700 0 0 0 0 0 0 17438 297 16895 323873;323874;323875 197992 197992 1 REDVVVATK Unmodified 1015.5662 0.56620887 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 11.368 12.221 2 0.00019194 3179 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 130.66 80.529 437190000 0 144280000 136260000 0 2290700 0 55938000 0 53112000 0 0 0 0 0 13283000 0 0 0 0 0 32026000 0 0 0 17439 1934 16896 323876;323877;323878;323879;323880;323881;323882 197993;197994 197994 2 REEDDRVR Unmodified 1073.5214 0.52138394 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 5.2043 6.0654 2 0.0012275 1006 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 147.19 128.4 280450000 32798000 31819000 31123000 0 0 799480 22712000 22983000 25249000 0 0 0 15553000 14621000 16312000 0 0 0 21254000 23152000 22076000 0 0 0 17440 508 16897 323883;323884;323885;323886;323887;323888;323889;323890;323891;323892;323893;323894;323895 197995;197996;197997;197998;197999 197996 5 REEDGIVLIDQDK Unmodified 1528.7733 0.77330111 1067;1156 P11349;P19318 narH;narY Respiratory nitrate reductase 1 beta chain;Respiratory nitrate reductase 2 beta chain no no 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 3 2 2 2 2 1 2 1 1 1 2 2 2 2 24.496 23.439 2;3;4 9.0612E-09 8639 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 166.04 156.04 743060000 3828600 10419000 5274200 1291000 1760200 1387000 245510000 134940000 29428000 9705300 7422600 7295100 12245000 139510000 0 0 0 1650900 11394000 13010000 43901000 22675000 21919000 18487000 17441 1067;1156 16898 323896;323897;323898;323899;323900;323901;323902;323903;323904;323905;323906;323907;323908;323909;323910;323911;323912;323913;323914;323915;323916;323917;323918;323919;323920;323921;323922;323923;323924;323925;323926;323927;323928;323929 198000;198001;198002;198003;198004;198005;198006;198007;198008;198009 198004 6 REEDGIVLIDQDKCR Unmodified 1844.9051 0.90506034 1067;1156 P11349;P19318 narH;narY Respiratory nitrate reductase 1 beta chain;Respiratory nitrate reductase 2 beta chain no no 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 20.841 20.746 3 1.6055E-11 6436 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 136.39 134.27 49991000 0 0 0 1396100 1219100 1618100 0 0 0 4606800 3091700 2993600 0 0 0 0 0 0 0 0 0 12236000 10532000 12297000 17442 1067;1156 16899 323930;323931;323932;323933;323934;323935;323936;323937;323938 198010;198011;198012;198013;198014;198015 198014 6 REEEEQQQR Unmodified 1230.5589 0.55889166 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 2 1 1 7.0377 7.5296 2;3 8.2922E-16 1637 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 234.81 209.88 459800000 45813000 38037000 33447000 0 406450 439940 11876000 12482000 11415000 1245100 641920 670570 15535000 13319000 11491000 72593000 60688000 62685000 23237000 22210000 18644000 1166400 710770 1051000 17443 729 16900 323939;323940;323941;323942;323943;323944;323945;323946;323947;323948;323949;323950;323951;323952;323953;323954;323955;323956;323957;323958;323959;323960;323961;323962;323963;323964;323965;323966 198016;198017;198018;198019;198020;198021;198022;198023;198024;198025;198026;198027;198028;198029;198030 198019 15 REEESAAAAEVEER Unmodified 1574.7172 0.7172428 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 3 7 2 2 2 5 4 4 2 1 1 4 4 3 2 5 4 4 3 3 2 2 2 13.594 14.222 2;3 4.1838E-56 3178 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 308.74 291.72 31701000000 3031300000 1032100000 2413700000 151790000 172680000 154420000 2339000000 2806300000 2286200000 18796000 23587000 20563000 1118200000 2286500000 2029200000 732360000 884020000 721280000 3256700000 3123200000 2887400000 44251000 91377000 76473000 17444 728 16901 323967;323968;323969;323970;323971;323972;323973;323974;323975;323976;323977;323978;323979;323980;323981;323982;323983;323984;323985;323986;323987;323988;323989;323990;323991;323992;323993;323994;323995;323996;323997;323998;323999;324000;324001;324002;324003;324004;324005;324006;324007;324008;324009;324010;324011;324012;324013;324014;324015;324016;324017;324018;324019;324020;324021;324022;324023;324024;324025;324026;324027;324028;324029;324030;324031;324032;324033;324034;324035;324036;324037;324038;324039;324040;324041;324042;324043 198031;198032;198033;198034;198035;198036;198037;198038;198039;198040;198041;198042;198043;198044;198045;198046;198047;198048;198049;198050;198051;198052;198053;198054;198055;198056;198057;198058;198059;198060;198061;198062;198063;198064;198065;198066;198067;198068;198069;198070;198071;198072;198073;198074;198075;198076;198077;198078;198079;198080;198081;198082;198083;198084;198085;198086;198087;198088;198089;198090;198091;198092;198093 198056 55 REEGGQVSNWLHNHANVGDVVK Unmodified 2444.1945 0.1945175 1246 P24232 hmp Flavohemoprotein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.023 25.876 4 0.16603 11367 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 11.148 10.71 305880000 29480000 24941000 22506000 0 0 0 28383000 25206000 30531000 0 0 0 18448000 25802000 19920000 0 0 0 24964000 28222000 27481000 0 0 0 17445 1246 16902 324044;324045;324046;324047;324048;324049;324050;324051;324052;324053;324054;324055 198094;198095 198095 2 REEYGDMAEQK Unmodified 1354.5823 0.58232922 589 P0AAD6 sdaC Serine transporter yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.874 12.526 2 0.000392 3279 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 90.05 75.384 83284000 4072000 0 0 854280 914220 825000 6386200 5883000 0 3563700 4703400 3653000 12741000 0 9609600 0 0 0 0 9262100 9333100 3640300 4038400 3804500 17446 589 16903 324056;324057;324058;324059;324060;324061;324062;324063;324064;324065;324066;324067;324068;324069;324070;324071 198096;198097 198097 1 REFNVEANVGKPQVAYR Unmodified 1976.0228 0.022807713 264 P0A6M8 fusA Elongation factor G yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 2 2 2 21.146 21.473 3;4 4.8318E-14 8792 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 163.84 158.39 596450000 54647000 47921000 52735000 0 0 0 47455000 42070000 48720000 0 0 0 24924000 39103000 19425000 0 0 0 81881000 71806000 65760000 0 0 0 17447 264 16904 324072;324073;324074;324075;324076;324077;324078;324079;324080;324081;324082;324083;324084;324085;324086;324087;324088;324089;324090;324091;324092;324093 198098;198099;198100;198101;198102;198103;198104;198105;198106;198107;198108;198109;198110;198111;198112;198113 198100 16 REGDLPAYWADASK Unmodified 1577.7474 0.74742071 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 1 1 2 2 1 29.087 27.734 2;3 3.0769E-11 12885 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.21 156.54 243500000 77226000 87227000 24147000 0 0 0 11302000 17882000 14180000 0 0 0 0 0 0 0 0 0 0 11540000 0 0 0 0 17448 202 16905 324094;324095;324096;324097;324098;324099;324100;324101;324102;324103;324104 198114;198115;198116;198117;198118;198119 198116 5 REGFELAVSR Unmodified 1162.6095 0.60947067 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 21.005 21.328 2;3 0.00067341 8770 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 99.568 75.613 738930000 43962000 38192000 34223000 0 0 0 58179000 61938000 67247000 0 0 0 76355000 67286000 69809000 0 0 0 73003000 80255000 68478000 0 0 0 17449 1388 16906 324105;324106;324107;324108;324109;324110;324111;324112;324113;324114;324115;324116;324117;324118;324119;324120;324121;324122;324123;324124;324125;324126;324127;324128 198120;198121;198122;198123;198124;198125;198126;198127;198128;198129;198130;198131;198132 198124 13 REGFELAVSRPK Unmodified 1387.7572 0.75719754 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 17.086 17.647 2;3 4.1075E-05 5966 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 103.14 102.78 1029500000 77195000 66955000 52328000 3030200 1788600 0 107990000 95196000 102750000 3689100 2071300 2966700 63761000 55243000 67114000 2251200 1656200 2332400 111030000 108500000 94814000 2164300 2420200 2249300 17450 1388 16907 324129;324130;324131;324132;324133;324134;324135;324136;324137;324138;324139;324140;324141;324142;324143;324144;324145;324146;324147;324148;324149;324150;324151;324152;324153;324154;324155;324156;324157;324158;324159;324160;324161;324162;324163 198133;198134;198135;198136;198137;198138;198139;198140;198141;198142;198143;198144;198145;198146;198147;198148 198146 15 REGRPSEGETLIAR Unmodified 1569.8223 0.82231699 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 2 2 3 3 3 3 3 1 1 1 3 3 3 1 1 3 3 3 1 1 1 12.473 13.245 2;3;4 1.4428E-14 3606 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 185.67 141.68 1176600000 46492000 21638000 24478000 16801000 21860000 17308000 109160000 101840000 122790000 8812000 9581800 9764300 94961000 93466000 93161000 0 3933700 4096800 128140000 130810000 102740000 5259100 4103700 5429000 17451 107 16908 324164;324165;324166;324167;324168;324169;324170;324171;324172;324173;324174;324175;324176;324177;324178;324179;324180;324181;324182;324183;324184;324185;324186;324187;324188;324189;324190;324191;324192;324193;324194;324195;324196;324197;324198;324199;324200;324201;324202;324203;324204;324205;324206;324207;324208;324209;324210;324211;324212;324213 198149;198150;198151;198152;198153;198154;198155;198156;198157;198158;198159;198160;198161;198162;198163;198164;198165;198166;198167;198168 198168 20 REGTDLFLK Unmodified 1077.5819 0.58185893 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 1 1 2 1 1 1 2 2 1 2 2 2 21.525 21.576 2;3 0.00010075 8549 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.61 96.94 2032600000 270610000 339370000 248180000 7925800 8771300 7083400 74399000 72830000 82880000 17195000 16362000 10825000 99184000 82877000 75783000 8574200 5925200 5655600 208350000 187200000 163100000 12786000 13230000 13468000 17452 375 16909 324214;324215;324216;324217;324218;324219;324220;324221;324222;324223;324224;324225;324226;324227;324228;324229;324230;324231;324232;324233;324234;324235;324236;324237;324238;324239;324240;324241;324242;324243;324244;324245;324246;324247;324248;324249 198169;198170;198171;198172;198173;198174;198175;198176;198177;198178;198179;198180;198181;198182;198183;198184;198185;198186;198187;198188;198189;198190;198191;198192;198193;198194;198195;198196;198197;198198;198199;198200;198201 198198 31 REISMSIK Unmodified 962.5219 0.52190122 368 P0A7S9 rpsM 30S ribosomal protein S13 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.317 14.989 2 0.0011775 4852 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.73 69.659 312280000 48924000 50535000 42569000 1759900 0 1812900 15494000 15486000 14752000 2348700 1298100 1509400 14986000 15921000 14128000 0 0 0 22062000 22921000 22738000 0 1686500 1353900 17453 368 16910 324250;324251;324252;324253;324254;324255;324256;324257;324258;324259;324260;324261;324262;324263;324264;324265;324266;324267;324268 198202;198203;198204;198205;198206;198207;198208;198209;198210;198211 198208 10 RELDAQPTGFLDSR Unmodified 1603.7954 0.79543354 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.092 25.99 3 0.0074832 11784 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 53.169 48.621 47540000 6922400 5412800 4356700 0 0 0 3399600 0 2972400 0 0 0 3078200 1518700 3330700 0 0 0 4549500 5231800 6766900 0 0 0 17454 1348 16911 324269;324270;324271;324272;324273;324274;324275;324276;324277;324278;324279 198212;198213 198213 2 RELHTIK Unmodified 895.52395 0.52395013 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.198 10.651 2 0.0021339 1984 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 125.31 71.258 2295000000 6028600 6953300 4972300 0 0 0 0 0 0 344160000 328870000 250640000 1748700 1461600 0 584040000 141630000 142360000 4031300 3627600 4059600 170390000 138050000 161960000 17455 1616 16912 324280;324281;324282;324283;324284;324285;324286;324287;324288;324289;324290;324291;324292;324293;324294;324295;324296 198214;198215;198216;198217;198218;198219;198220;198221;198222 198215 9 RELHTIKLPLPTQYQTAIK Unmodified 2249.2896 0.28958709 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 2 By MS/MS By matching By matching 2 1 1 28.546 28.562 3;4 0.0014692 9684 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 61.276 61.276 43670000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18495000 12151000 13025000 0 0 0 0 0 0 17456 1616 16913 324297;324298;324299;324300 198223;198224 198223 2 RELSINDEVIK Unmodified 1314.7143 0.71432967 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 1 2 2 1 1 2 2 2 21.847 21.898 2;3 0.00037435 8599 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 91.855 55.911 151960000 19350000 14203000 13042000 2019200 2206300 2269000 5891800 5304200 0 0 13387000 1304200 8832100 9701000 8332500 0 0 1019100 15947000 16401000 12753000 0 0 0 17457 1214 16914 324301;324302;324303;324304;324305;324306;324307;324308;324309;324310;324311;324312;324313;324314;324315;324316;324317;324318;324319;324320;324321;324322;324323;324324;324325 198225;198226;198227;198228;198229;198230 198229 4 RENELEEAVMSDR Unmodified 1576.7151 0.71513431 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.721 23.767 3 0.010086 10490 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.771 43.172 77739000 12530000 10773000 9980100 0 0 0 0 0 6347500 0 1203300 1238200 5083100 6981300 5633400 0 1201500 0 6450300 3887700 5830500 599480 0 0 17458 297 16915 324326;324327;324328;324329;324330;324331;324332;324333;324334;324335;324336;324337;324338;324339 198231;198232;198233 198231 1 RENELEEAVMSDRDTGAAAEPR Unmodified 2445.119 0.11902888 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By matching By matching 1 2 2 1 1 2 24.928 23.982 3;4 0.0055137 8725 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 34.217 33.99 20284000 0 0 0 0 0 0 0 0 0 3398600 4145600 4353900 0 0 0 1542400 2794300 4049300 0 0 0 0 0 0 17459 297 16916 324340;324341;324342;324343;324344;324345;324346;324347;324348 198234;198235 198235 2 RENGLWIVEAEDIDTGKK Unmodified 2072.0538 0.05383307 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 33.315 31.843 3;4 1.4437E-09 12754 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 117.3 113.46 1206100000 0 0 0 2523000 3327100 2619400 105090000 105950000 86724000 176470000 161950000 178720000 37870000 38283000 30449000 26291000 17649000 21317000 51336000 46463000 56441000 32622000 12070000 11972000 17460 1088 16917 324349;324350;324351;324352;324353;324354;324355;324356;324357;324358;324359;324360;324361;324362;324363;324364;324365;324366;324367;324368;324369;324370;324371;324372;324373;324374;324375;324376;324377;324378;324379;324380;324381;324382;324383;324384;324385;324386;324387 198236;198237;198238;198239;198240;198241;198242;198243;198244;198245;198246;198247;198248;198249;198250;198251;198252;198253;198254;198255;198256;198257;198258;198259;198260;198261;198262 198241 27 RENQSLLNGPQVDTSK Unmodified 1784.9017 0.90168952 523 P0A9H9 cheZ Protein phosphatase CheZ yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 18.286 18.928 3 2.0797E-10 5204 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 136.34 133.32 77065000 18681000 19052000 19664000 6232000 7403800 6031900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17461 523 16918 324388;324389;324390;324391;324392;324393 198263;198264;198265 198265 3 REPDQVK Unmodified 870.45593 0.45593014 1075 P12008 aroC Chorismate synthase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 4.9449 5.8076 2 0.037908 1193 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 66.799 49.872 46229000 0 0 0 0 0 0 0 0 0 0 0 0 10789000 6913000 0 0 0 0 10651000 9082400 8793500 0 0 0 17462 1075 16919 324394;324395;324396;324397;324398 198266;198267;198268 198266 3 REPGMLAR Unmodified 928.49127 0.49126979 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.909 12.741 2 1.1167E-05 3296 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 179.21 123.77 1353200000 144940000 156150000 140820000 0 0 0 112630000 108570000 98969000 0 0 0 87102000 70719000 70060000 0 0 0 124400000 124800000 114000000 0 0 0 17463 58 16920 324399;324400;324401;324402;324403;324404;324405;324406;324407;324408;324409;324410 198269 198269 1 REPGPNDVK Unmodified 1010.5145 0.51450765 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 1 By MS/MS By matching By MS/MS 1 2 2 10.457 11.165 2 0.0013057 2622 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.692 75.961 752200000 251670000 259700000 240820000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17464 1762 16921 324411;324412;324413;324414;324415 198270;198271 198270 1 REPLGVVAGIGAWNYPIQIALWK Unmodified 2550.4111 0.4110992 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 54.646 53.24 3 0.0001953 26444 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 71.54 68.927 141920000 45310000 53620000 42991000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17465 1141 16922 324416;324417;324418 198272 198272 1 REPVTEEEK Unmodified 1115.5459 0.54586736 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 9.3394 10.184 2 1.0343E-06 2470 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 179.37 158.67 2023100000 319550000 320220000 266890000 0 0 0 39272000 27071000 0 0 0 0 145960000 139080000 61094000 0 0 0 243650000 222350000 238000000 0 0 0 17466 793 16923 324419;324420;324421;324422;324423;324424;324425;324426;324427;324428;324429;324430;324431 198273;198274;198275;198276;198277;198278;198279;198280;198281;198282;198283;198284;198285 198280 13 REQCETGAR Unmodified 1105.4935 0.49345463 278 P0A6T3 galK Galactokinase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 5.2425 6.0519 2 0.0028191 854 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.807 71.65 38757000 6969400 5388700 5738700 0 0 0 5003600 5621300 5999400 0 0 0 0 0 0 0 0 0 0 4035700 0 0 0 0 17467 278 16924 324432;324433;324434;324435;324436;324437;324438 198286;198287;198288 198286 2 REQEAAELKR Unmodified 1228.6524 0.65239812 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.376 11.031 3 0.0016794 2448 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 63.864 50.095 120020000 0 0 0 0 0 0 4117100 9665100 12372000 0 0 0 18509000 18557000 19705000 0 4796300 6175600 14584000 0 11536000 0 0 0 17468 297 16925 324439;324440;324441;324442;324443;324444;324445;324446;324447;324448 198289;198290;198291;198292 198291 4 REQLGLPSSDTEISDTCPAYDEEAR Unmodified 2838.2614 0.2613956 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.519 31.121 3 5.3351E-31 14954 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 197.38 197.38 388100000 20005000 12358000 9063000 0 0 0 38029000 32878000 39315000 0 0 3751800 39576000 35495000 36802000 0 0 0 36875000 41569000 42383000 0 0 0 17469 1468 16926 324449;324450;324451;324452;324453;324454;324455;324456;324457;324458;324459;324460;324461 198293;198294;198295;198296;198297;198298;198299;198300;198301 198294 9 REQLLEVGDFLK Unmodified 1445.7878 0.78782897 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 2 1 2 2 2 2 2 2 2 1 1 1 2 1 2 2 2 2 40.926 39.196 2;3 4.0818E-05 18934 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.463 89.552 228110000 12282000 5424500 9361900 0 1392900 0 21009000 11636000 14208000 9063200 7817300 7083500 15854000 16131000 15786000 3537200 1731600 2205000 23657000 15977000 19986000 4539000 4821200 4603500 17470 1426 16927 324462;324463;324464;324465;324466;324467;324468;324469;324470;324471;324472;324473;324474;324475;324476;324477;324478;324479;324480;324481;324482;324483;324484;324485;324486;324487;324488;324489;324490;324491;324492;324493;324494;324495;324496;324497;324498 198302;198303;198304;198305;198306;198307;198308;198309;198310;198311;198312;198313 198308 11 RESLGLDSESIR Unmodified 1360.6947 0.69465686 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 2 2 20.023 20.494 2;3 1.6243E-05 7690 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 127.83 85.955 251650000 30180000 24291000 24176000 0 0 0 22260000 19471000 23914000 0 0 0 16850000 14973000 12729000 0 0 0 12342000 27665000 22792000 0 0 0 17471 1233 16928 324499;324500;324501;324502;324503;324504;324505;324506;324507;324508;324509;324510;324511;324512;324513;324514;324515 198314;198315;198316;198317;198318;198319 198316 6 RETLEDAVK Unmodified 1059.556 0.55603811 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 1 2 1 1 1 2 1 1 13.061 13.736 2;3 0.022137 3920 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 44.882 36.301 5253500000 138210000 0 165430000 0 549500 0 943030000 1002000000 1112400000 12124000 0 10489000 457610000 388450000 339710000 24531000 13472000 3615100 237190000 225050000 179670000 0 0 0 17472 1717 16929 324516;324517;324518;324519;324520;324521;324522;324523;324524;324525;324526;324527;324528;324529;324530;324531;324532;324533;324534;324535;324536;324537 198320;198321;198322;198323 198323 2 RETLEMVVR Unmodified 1131.607 0.60702783 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 1 2 2 1 1 1 1 2 2 1 2 2 2 19.523 19.841 2;3 3.4462E-05 7825 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 154.81 122.88 640160000 29665000 26751000 29817000 17084000 16481000 19651000 36979000 37021000 34979000 28552000 16331000 19276000 22963000 28564000 22189000 0 0 0 72486000 64855000 53620000 21021000 20613000 21258000 17473 252 16930 324538;324539;324540;324541;324542;324543;324544;324545;324546;324547;324548;324549;324550;324551;324552;324553;324554;324555;324556;324557;324558;324559;324560;324561;324562;324563;324564;324565;324566;324567;324568;324569;324570;324571;324572;324573;324574;324575;324576;324577;324578 198324;198325;198326;198327;198328;198329;198330;198331;198332;198333;198334;198335;198336;198337;198338;198339;198340;198341;198342;198343;198344;198345;198346;198347;198348;198349;198350;198351;198352 198334 27 REWSSLYVICDDASAASLLCK Unmodified 2443.1512 0.15118063 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 47.513 46.096 3 5.1719E-05 22503 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.088 58.545 136280000 0 12882000 0 0 0 0 14067000 19835000 10808000 0 0 0 14630000 11885000 11573000 0 0 0 10009000 12566000 18027000 0 0 0 17474 111 16931 324579;324580;324581;324582;324583;324584;324585;324586;324587;324588 198353;198354 198354 0 RFAQAIHAK Unmodified 1040.5879 0.58794737 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.686 11.502 2 0.00052184 2792 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.81 97.228 1392000000 445600000 308870000 168280000 0 0 0 75206000 64560000 62193000 0 0 0 30235000 29361000 31535000 0 0 0 56610000 59624000 59932000 0 0 0 17475 517 16932 324589;324590;324591;324592;324593;324594;324595;324596;324597;324598;324599;324600 198355;198356;198357;198358;198359;198360;198361;198362 198358 8 RFAVDFVGGDLK Unmodified 1322.6983 0.69828568 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 2 1 1 2 2 1 1 1 34.532 33.093 2;3 0.00010017 15055 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 99.752 53.594 138780000 9074100 7703200 10917000 0 0 0 13529000 19859000 9975300 0 0 0 7732900 14703000 16458000 0 0 0 9594900 9157300 10073000 0 0 0 17476 1548 16933 324601;324602;324603;324604;324605;324606;324607;324608;324609;324610;324611;324612;324613;324614;324615;324616 198363;198364;198365;198366;198367;198368 198367 2 RFDAVQGK Unmodified 919.48756 0.48756462 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.511 11.983 2 0.00015356 2291 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 157.33 101.82 266900000 36961000 33726000 0 33907000 29134000 26481000 0 0 0 0 0 1354800 0 0 0 13672000 11591000 12800000 0 0 0 25405000 20910000 20954000 17477 1587 16934 324617;324618;324619;324620;324621;324622;324623;324624;324625;324626;324627;324628 198369;198370;198371;198372;198373 198371 5 RFDETGHSQIMVEPVADVTAYGVVDCK Unmodified 3022.4165 0.41645645 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 40.033 38.251 3;4 8.68E-23 18948 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 170.44 170.44 1367000000 64915000 73672000 63612000 0 1844300 1116500 156980000 153830000 166170000 2104100 2087200 1813400 118540000 106070000 99913000 0 0 0 115430000 123800000 113710000 0 1342400 0 17478 876 16935 324629;324630;324631;324632;324633;324634;324635;324636;324637;324638;324639;324640;324641;324642;324643;324644;324645;324646;324647;324648;324649;324650;324651;324652;324653;324654;324655;324656;324657;324658 198374;198375;198376;198377;198378;198379;198380;198381;198382;198383;198384;198385;198386;198387;198388;198389;198390;198391;198392;198393;198394;198395 198377 22 RFDFLGEFPLEPVNGK Unmodified 1863.9519 0.95193418 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 1 2 2 2 2 1 1 2 2 1 1 43.513 42.133 3 1.9165E-06 24038 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 91.657 90.034 320850000 43609000 37511000 39307000 1374900 1273600 1537000 14653000 17027000 15854000 4585400 2119000 5445500 21344000 20092000 19815000 0 3145200 2562500 28669000 31550000 8100300 0 1280100 0 17479 1145 16936 324659;324660;324661;324662;324663;324664;324665;324666;324667;324668;324669;324670;324671;324672;324673;324674;324675;324676;324677;324678;324679;324680;324681;324682;324683;324684;324685;324686;324687;324688;324689;324690;324691;324692 198396;198397;198398 198397 3 RFDGVLASELADPQLYK Unmodified 1920.9945 0.99452728 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 2 1 1 2 2 2 2 2 2 1 43.121 41.504 2;3 2.0236E-39 20505 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 254.1 226.14 1477200000 90630000 114760000 110170000 0 0 0 136360000 132830000 125390000 0 2030600 2554100 101460000 100430000 91853000 0 0 0 143030000 156350000 168270000 1102800 0 0 17480 60 16937 324693;324694;324695;324696;324697;324698;324699;324700;324701;324702;324703;324704;324705;324706;324707;324708;324709;324710;324711;324712;324713;324714;324715;324716;324717;324718 198399;198400;198401;198402;198403;198404;198405;198406;198407;198408;198409;198410;198411;198412;198413;198414;198415;198416;198417;198418;198419;198420;198421 198404 23 RFDTAAMLILEANNTIAPVPK Unmodified 2284.2249 0.22493792 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 52.027 50.794 3 2.3791E-10 24708 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.32 116.79 259960000 45960000 42760000 44265000 0 0 0 0 49602000 49794000 0 0 0 9484200 9684600 8409000 0 0 0 0 0 0 0 0 0 17481 1831 16938 324719;324720;324721;324722;324723;324724;324725;324726 198422;198423 198423 1 RFEAEQYDPQR Unmodified 1437.6637 0.66369108 1963 Q46871 yqjH NADPH-dependent ferric-chelate reductase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 2 2 2 2 1 15.37 16.168 2;3 0.002747 5486 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.067 62.543 96572000 12401000 11528000 12069000 0 0 0 2437200 0 0 0 0 0 9911400 3953300 7814200 0 0 0 10585000 9519400 12510000 3843900 0 0 17482 1963 16939 324727;324728;324729;324730;324731;324732;324733;324734;324735;324736;324737;324738;324739;324740;324741;324742;324743;324744;324745 198424;198425;198426;198427;198428;198429;198430 198426 4 RFEAYHWHVIHEIDGHDPQAVK Unmodified 2683.3044 0.3044023 1423 P33570 tktB Transketolase 2 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 1 1 2 2 2 1 1 1 1 23.74 22.852 5;6 0.0033683 9818 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.645 44.922 182980000 31307000 18421000 17885000 0 0 0 32657000 33860000 29664000 0 0 0 0 0 5549100 0 0 0 3987300 4390600 5257100 0 0 0 17483 1423 16940 324746;324747;324748;324749;324750;324751;324752;324753;324754;324755;324756;324757;324758;324759 198431;198432 198432 2 RFEEHLQHEAQER Unmodified 1707.8077 0.80772956 1512 P39177 uspG Universal stress protein G yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 3 3 3 3 3 3 3 3 3 2 2 2 3 2 2 3 3 3 3 3 2 11.517 12.119 2;3;4 4.7788E-18 2611 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 222.99 203.23 2944100000 71468000 68430000 66347000 88751000 94875000 61331000 492510000 476720000 499570000 96862000 79788000 79814000 117290000 120430000 99715000 20383000 21978000 23930000 65680000 92660000 79517000 43715000 46820000 35473000 17484 1512 16941 324760;324761;324762;324763;324764;324765;324766;324767;324768;324769;324770;324771;324772;324773;324774;324775;324776;324777;324778;324779;324780;324781;324782;324783;324784;324785;324786;324787;324788;324789;324790;324791;324792;324793;324794;324795;324796;324797;324798;324799;324800;324801;324802;324803;324804;324805;324806;324807;324808;324809;324810;324811;324812;324813;324814;324815;324816;324817;324818;324819;324820;324821;324822;324823 198433;198434;198435;198436;198437;198438;198439;198440;198441;198442;198443;198444;198445;198446;198447;198448;198449;198450;198451;198452;198453;198454;198455;198456;198457;198458;198459;198460;198461;198462;198463;198464;198465;198466;198467;198468;198469;198470;198471;198472 198440 35 RFFGAAR Unmodified 823.44531 0.44530587 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.192 13.799 2 0.001143 3604 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 141.55 122.87 652030000 58419000 58408000 59445000 15670000 14965000 13475000 35837000 39476000 36340000 51125000 45654000 37779000 25128000 26544000 20798000 2963700 2135200 3068200 34729000 31502000 29377000 3715500 2361000 3117100 17485 982 16942 324824;324825;324826;324827;324828;324829;324830;324831;324832;324833;324834;324835;324836;324837;324838;324839;324840;324841;324842;324843;324844;324845;324846;324847 198473;198474;198475;198476;198477;198478;198479 198474 7 RFGATDCINPNDYDKPIK Unmodified 2123.0106 0.010588046 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 1 1 24.312 23.447 3;4 1.3465E-09 10617 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 118.48 116.91 548630000 67607000 66437000 61083000 0 0 0 30321000 33097000 62175000 0 0 0 50912000 40482000 23916000 0 0 0 59729000 31430000 21444000 0 0 0 17486 1253 16943 324848;324849;324850;324851;324852;324853;324854;324855;324856;324857;324858;324859;324860;324861;324862;324863;324864;324865;324866 198480;198481;198482;198483;198484;198485;198486;198487;198488;198489;198490;198491 198480 12 RFGELPFLFK Unmodified 1252.6968 0.69682911 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.81 44.348 2;3 0.0019345 21992 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 68.657 66.518 507190000 31931000 32705000 24973000 0 0 0 51044000 54740000 51095000 0 0 0 50351000 48084000 42898000 0 0 0 40441000 39236000 39695000 0 0 0 17487 56 16944 324867;324868;324869;324870;324871;324872;324873;324874;324875;324876;324877;324878;324879;324880;324881;324882;324883;324884;324885;324886;324887;324888;324889;324890 198492;198493;198494;198495;198496;198497;198498;198499;198500;198501;198502;198503;198504;198505;198506;198507;198508 198496 17 RFGGESVLAGSIIVR Unmodified 1559.8784 0.87837531 355 P0A7L8 rpmA 50S ribosomal protein L27 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.84 33.168 3 0.0001595 12966 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 72.898 63.098 65109000 0 0 0 0 0 0 0 0 2550200 6175600 4864800 4027800 0 0 0 0 5256700 6899500 5962900 6089000 0 8283300 8198000 6800800 17488 355 16945 324891;324892;324893;324894;324895;324896;324897;324898;324899;324900;324901 198509;198510;198511;198512 198511 4 RFGIEPR Unmodified 873.48209 0.48208531 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.957 14.807 2 0.0081057 4849 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.352 65.993 286570000 49207000 39657000 35549000 0 0 0 19923000 20831000 21879000 0 0 0 11772000 13976000 12227000 0 0 0 21141000 19997000 20415000 0 0 0 17489 1872 16946 324902;324903;324904;324905;324906;324907;324908;324909;324910;324911;324912;324913 198513;198514;198515 198514 3 RFGLLGYEAATLEDVGR Unmodified 1865.9636 0.9635615 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 1 2 2 1 2 4 4 4 4 3 3 3 3 4 13 14 10 3 2 2 1 1 1 46.647 45.671 2;3 1.2163E-39 15929 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 303.36 271.11 5555600000 13505000 8119300 10212000 2636400 1268500 2394800 72856000 82691000 60478000 45420000 39377000 40388000 38913000 36271000 40459000 1371000000 1748200000 1869700000 24639000 17361000 14199000 4820600 5584600 5153900 17490 1089 16947 324914;324915;324916;324917;324918;324919;324920;324921;324922;324923;324924;324925;324926;324927;324928;324929;324930;324931;324932;324933;324934;324935;324936;324937;324938;324939;324940;324941;324942;324943;324944;324945;324946;324947;324948;324949;324950;324951;324952;324953;324954;324955;324956;324957;324958;324959;324960;324961;324962;324963;324964;324965;324966;324967;324968;324969;324970;324971;324972;324973;324974;324975;324976;324977;324978;324979;324980;324981;324982;324983;324984;324985;324986;324987;324988;324989;324990;324991;324992;324993;324994;324995;324996;324997;324998;324999;325000;325001;325002 198516;198517;198518;198519;198520;198521;198522;198523;198524;198525;198526;198527;198528;198529;198530;198531;198532;198533;198534;198535;198536;198537;198538;198539;198540;198541;198542;198543;198544;198545;198546;198547;198548;198549;198550;198551;198552;198553;198554;198555;198556;198557;198558;198559 198519 38 RFGLLGYEAATLEDVGREIGLTR Unmodified 2535.3445 0.34453578 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 2 2 52.977 53.033 3;4 1.5632E-53 19663 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 259.93 242.67 238860000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49715000 80508000 108630000 0 0 0 0 0 0 17491 1089 16948 325003;325004;325005;325006;325007;325008 198560;198561;198562;198563;198564;198565 198562 6 RFGVEDGSVEGLR Unmodified 1419.7106 0.71064128 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 3 2 1 1 1 4 2 2 1 1 2 2 2 1 1 1 24.127 23.198 2;3 8.5293E-11 10186 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 140.09 117.85 563010000 42159000 33628000 39235000 2061900 2057700 2587100 57100000 35928000 47099000 3178100 3201800 3442200 51067000 32267000 36658000 2323600 0 1490100 65071000 38408000 58430000 2199300 2284800 1140100 17492 396 16949 325009;325010;325011;325012;325013;325014;325015;325016;325017;325018;325019;325020;325021;325022;325023;325024;325025;325026;325027;325028;325029;325030;325031;325032;325033;325034;325035;325036;325037;325038;325039;325040;325041;325042;325043;325044;325045;325046;325047;325048 198566;198567;198568;198569;198570;198571;198572;198573;198574;198575;198576;198577;198578;198579;198580;198581;198582;198583;198584;198585;198586;198587;198588;198589 198575 24 RFHQEMLNLFLK Unmodified 1574.8392 0.83915303 27 P00393 ndh NADH dehydrogenase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 1 1 1 1 2 2 2 37.008 35.074 3;4 1.4928E-06 13953 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 136.7 130.8 208000000 0 0 0 5251000 5810000 5130400 0 0 5354800 32603000 29814000 29376000 2028400 11588000 9000300 0 0 0 12840000 15396000 15135000 7151100 10630000 10894000 17493 27 16950 325049;325050;325051;325052;325053;325054;325055;325056;325057;325058;325059;325060;325061;325062;325063;325064;325065;325066;325067;325068;325069;325070;325071;325072;325073;325074;325075;325076 198590;198591;198592;198593;198594;198595;198596;198597;198598;198599;198600;198601;198602 198592 11 RFHTLSGGKPQVEGAEDYTDSDD Unmodified 2523.115 0.11498936 793 P0ADN2 yifE UPF0438 protein YifE yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 3 3 3 1 2 2 3 3 3 20.227 20.593 2;3;4 1.9916E-36 8282 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 224.56 224.56 3308700000 295870000 365180000 298160000 1005500 1180800 1445000 282470000 252150000 263100000 0 0 0 221740000 208730000 188060000 7375500 10997000 23380000 296020000 281490000 310370000 0 0 0 17494 793 16951 325077;325078;325079;325080;325081;325082;325083;325084;325085;325086;325087;325088;325089;325090;325091;325092;325093;325094;325095;325096;325097;325098;325099;325100;325101;325102;325103;325104;325105;325106;325107;325108;325109;325110;325111;325112;325113;325114;325115;325116;325117;325118;325119;325120 198603;198604;198605;198606;198607;198608;198609;198610;198611;198612;198613;198614;198615;198616;198617;198618;198619;198620;198621;198622;198623;198624;198625;198626;198627;198628;198629;198630;198631;198632;198633;198634;198635;198636;198637 198611 35 RFIQQGHK Unmodified 1012.5566 0.55664724 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 7.215 8.0725 2 0.0015354 1141 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.63 80.021 135110000 7161000 5860600 6814100 0 0 0 23707000 26067000 33742000 0 0 0 4476400 6029300 3127100 0 0 0 5849800 6115400 6156800 0 0 0 17495 1545 16952 325121;325122;325123;325124;325125;325126;325127;325128;325129;325130;325131;325132 198638;198639;198640;198641;198642;198643;198644;198645;198646;198647 198638 10 RFLDESLPLENGSYQDVVAFK Unmodified 2426.2118 0.21179027 1465 P37330 glcB Malate synthase G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 48.232 46.857 3 2.1382E-15 22835 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.9 140.59 86401000 20228000 20043000 16655000 0 0 0 8870400 5428100 0 0 0 0 0 0 0 0 0 0 0 7884700 7291700 0 0 0 17496 1465 16953 325133;325134;325135;325136;325137;325138;325139 198648;198649;198650 198649 3 RFLPNLHSHR Unmodified 1275.6949 0.69487205 356 P0A7M2 rpmB 50S ribosomal protein L28 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 2 2 1 2 1 12.395 13.086 2;3 7.9166E-07 3758 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.79 110.7 276400000 19614000 0 0 1923500 3346800 4115300 13260000 9272400 11662000 1971600 2711500 3911200 26366000 24860000 17581000 3152800 0 0 49888000 37684000 35754000 2482700 5141700 1697300 17497 356 16954 325140;325141;325142;325143;325144;325145;325146;325147;325148;325149;325150;325151;325152;325153;325154;325155;325156;325157;325158;325159;325160;325161;325162;325163;325164;325165 198651;198652;198653;198654;198655;198656 198653 4 RFMDDHGFLDIETPMLTK Unmodified 2165.0285 0.028546297 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.454 44.014 3;4 4.8762E-10 20556 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 101.61 98.174 389330000 24529000 15772000 19849000 0 0 0 32282000 29335000 31756000 0 0 0 36129000 38186000 28682000 0 0 0 50740000 39426000 42641000 0 0 0 17498 1189 16955 325166;325167;325168;325169;325170;325171;325172;325173;325174;325175;325176;325177;325178;325179;325180;325181;325182;325183;325184;325185;325186;325187;325188;325189 198657;198658;198659;198660;198661;198662;198663;198664;198665;198666;198667;198668;198669 198668 10 RFNHGAQPPVQSALDGK Unmodified 1820.9282 0.92817905 88 P04335 frsA Esterase FrsA yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.282 15.08 3 0.0082598 5103 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 25.358 15.777 157920000 0 0 67673000 0 0 0 12537000 0 11866000 0 0 0 7193500 12843000 12767000 0 0 0 10437000 10282000 12316000 0 0 0 17499 88 16956 325190;325191;325192;325193;325194;325195;325196;325197;325198 198670 198670 1 RFNIPGSK Unmodified 917.5083 0.50830006 358 P0A7M9 rpmE 50S ribosomal protein L31 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.01 15.746 2 0.00099947 5240 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 122.74 91.684 392370000 31603000 38612000 26531000 2998300 3272200 3020400 0 0 13358000 0 0 0 32138000 24996000 21890000 0 1377000 2004000 0 92169000 98396000 0 0 0 17500 358 16957 325199;325200;325201;325202;325203;325204;325205;325206;325207;325208;325209;325210;325211;325212 198671;198672;198673;198674;198675;198676;198677 198671 7 RFNPEVGVR Unmodified 1072.5778 0.57777661 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 15.473 15.666 2 5.0072E-08 4033 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 195.32 168.72 201910000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68024000 71699000 59419000 0 2769600 0 0 0 0 17501 1004 16958 325213;325214;325215;325216 198678;198679;198680 198679 3 RFPLHEMR Unmodified 1084.56 0.56001806 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 3 2 2 1 3 3 3 2 2 2 2 2 2 2 2 2 13.162 13.888 2;3 3.0538E-06 4059 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 162.25 149.9 16647000000 1552000000 1582000000 1487500000 0 0 3289500 3447800000 3511000000 3872000000 12469000 8705400 8592100 205860000 189240000 166170000 0 0 0 200660000 200910000 198380000 0 0 0 17502 1755;1756 16959 325217;325218;325219;325220;325221;325222;325223;325224;325225;325226;325227;325228;325229;325230;325231;325232;325233;325234;325235;325236;325237;325238;325239;325240;325241;325242;325243;325244;325245;325246;325247;325248;325249;325250;325251 198681;198682;198683;198684;198685;198686;198687;198688;198689;198690;198691;198692;198693;198694 198684 12 RFPLHEMR Oxidation (M) 1100.5549 0.55493268 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 2 2 1 1 1 1 11.302 12.11 2;3 0.0062859 3238 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 73.665 68.676 2466400000 213330000 0 179550000 0 0 0 239470000 941840000 820150000 0 0 0 0 18215000 0 0 0 0 21677000 23351000 8779300 0 0 0 17503 1755;1756 16959 325252;325253;325254;325255;325256;325257;325258;325259;325260;325261;325262 198695;198696;198697;198698;198699;198700;198701 198700 612 7 RFPLHEMRDDVAFQIINDELYLDGNAR Unmodified 3246.588 0.58803031 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 2 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 49.842 48.314 5 2.2871E-05 19328 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 71.528 69.417 63743000 0 0 0 1865400 1836900 1376600 6771300 11691000 6115300 15036000 12148000 6902300 0 0 0 0 0 0 0 0 0 0 0 0 17504 1755;1756 16960 325263;325264;325265;325266;325267;325268;325269;325270;325271 198702;198703 198702 2 RFQASDMVR Unmodified 1108.5448 0.54476192 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By MS/MS 1 15.814 15.814 2 0.0091365 4264 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 67.897 39.689 6208400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6208400 0 0 0 0 0 0 0 0 17505 1633 16961 325272 198704 198704 1 RFQDEEVQR Unmodified 1205.5789 0.57889882 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.604 12.334 2 8.0942E-16 3301 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 233.46 195.3 1715600000 149710000 107110000 105160000 10250000 12708000 10140000 171410000 167150000 168420000 0 0 0 114330000 106570000 100690000 7285500 0 4078200 147520000 154540000 155730000 0 10284000 12479000 17506 293 16962 325273;325274;325275;325276;325277;325278;325279;325280;325281;325282;325283;325284;325285;325286;325287;325288;325289;325290;325291 198705;198706;198707;198708;198709;198710;198711;198712;198713;198714;198715;198716;198717;198718;198719;198720;198721;198722 198712 17 RFQQAGHKPVALVGGATGLIGDPSFK Unmodified 2650.4344 0.43435384 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 2 2 2 2 2 2 1 2 2 1 1 30.267 28.883 4;5 0.0031748 13467 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 46.307 39.803 260540000 13791000 28839000 25087000 0 0 0 22499000 29204000 26813000 0 0 0 16803000 16471000 18051000 0 0 0 26894000 20609000 15476000 0 0 0 17507 1024 16963 325292;325293;325294;325295;325296;325297;325298;325299;325300;325301;325302;325303;325304;325305;325306;325307;325308;325309;325310;325311 198723;198724;198725;198726;198727;198728 198726 3 RFSLEGGDALIPMLK Unmodified 1645.8862 0.8861628 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.522 44.897 3 1.7379E-06 21097 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 106.76 106.76 330610000 26498000 24927000 18143000 1918100 2078300 1769200 12790000 10805000 13199000 2107400 1660600 2631400 21283000 15493000 22368000 0 0 0 47618000 45681000 40706000 5490300 7083500 6363400 17508 937 16964 325312;325313;325314;325315;325316;325317;325318;325319;325320;325321;325322;325323;325324;325325;325326;325327;325328;325329;325330;325331;325332 198729;198730;198731;198732;198733;198734;198735;198736;198737;198738;198739;198740;198741;198742;198743 198741 15 RFYDAVSTFK Unmodified 1232.619 0.61897272 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 25.047 24.015 2 5.031E-05 10250 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 140.45 114.06 126700000 8623500 9133500 0 0 0 0 11609000 10364000 10553000 0 0 0 10105000 9876200 0 0 0 0 20959000 17615000 17866000 0 0 0 17509 29 16965 325333;325334;325335;325336;325337;325338;325339;325340;325341;325342 198744;198745;198746;198747;198748 198747 5 RFYGVQFHPEVTHTR Unmodified 1872.9383 0.9383498 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 1 1 2 2 1 1 1 2 18.446 19.093 4;5 5.1376E-07 6869 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 116.96 113.54 171190000 17139000 7118000 9831500 0 729000 669780 11263000 9333200 13113000 0 0 0 20805000 19701000 11948000 0 0 0 13980000 15763000 19801000 0 0 0 17510 86 16966 325343;325344;325345;325346;325347;325348;325349;325350;325351;325352;325353;325354;325355;325356;325357;325358;325359;325360 198749;198750;198751;198752;198753;198754;198755 198753 6 RGADGYLLK Unmodified 991.54508 0.5450795 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.464 16.29 2 0.11727 5626 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 43.083 15.946 75369000 10238000 10452000 10326000 0 414140 0 7976400 8939300 7938900 0 0 0 3459100 2968700 3140200 0 0 0 3282200 3391000 2843400 0 0 0 17511 908 16967 325361;325362;325363;325364;325365;325366;325367;325368;325369;325370;325371;325372;325373 198756 198756 1 RGAFAMGGMAAFIPSKDEEHNNQVLNK Unmodified 2931.412 0.4119802 195 P08997 aceB Malate synthase A yes yes 0 0 2 By MS/MS By MS/MS By matching By matching 1 1 1 1 32.556 31.239 4 2.1612E-05 14669 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 72.22 65.993 86933000 23804000 25535000 31693000 0 0 0 0 5900900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17512 195 16968 325374;325375;325376;325377 198757;198758 198758 2 RGANVTLVSGPVSLPTPPFVK Unmodified 2135.2103 0.21027413 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.135 44.654 3 4.2907E-06 20836 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 88.872 85.728 284670000 27141000 23888000 19248000 747190 554750 0 25195000 22336000 23987000 0 0 0 19784000 21269000 24792000 0 0 0 19906000 30015000 25810000 0 0 0 17513 670 16969 325378;325379;325380;325381;325382;325383;325384;325385;325386;325387;325388;325389;325390;325391 198759;198760;198761;198762;198763;198764;198765;198766 198765 7 RGDAIFFVTGR Unmodified 1237.6568 0.65675521 830 P0AE22 aphA Class B acid phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 31.282 29.973 2;3 0.0010441 14119 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 84.884 28.074 264900000 35064000 30143000 26026000 0 0 0 10788000 11311000 24234000 0 0 0 17370000 22509000 18042000 0 0 0 23826000 22402000 23190000 0 0 0 17514 830 16970 325392;325393;325394;325395;325396;325397;325398;325399;325400;325401;325402;325403;325404;325405;325406;325407;325408;325409;325410;325411;325412;325413 198767;198768;198769;198770;198771 198768 4 RGDDFITLNAEQAMQGAADILR Unmodified 2404.1805 0.18050692 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 1 53.652 52.261 2;3 2.5841E-88 24504 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 324.12 304.8 1527300000 56661000 61336000 49585000 30603000 27086000 25866000 81861000 84940000 90389000 40385000 40435000 34896000 107580000 142880000 114910000 25701000 0 0 159940000 140340000 137600000 27990000 24739000 21552000 17515 1427 16971 325414;325415;325416;325417;325418;325419;325420;325421;325422;325423;325424;325425;325426;325427;325428;325429;325430;325431;325432;325433;325434;325435;325436;325437;325438;325439;325440;325441;325442;325443;325444;325445;325446;325447;325448;325449;325450;325451;325452 198772;198773;198774;198775;198776;198777;198778;198779;198780;198781;198782;198783;198784;198785;198786;198787;198788;198789;198790;198791;198792;198793;198794;198795;198796 198796 24 RGDIVVFK Unmodified 932.54435 0.54435122 39 P00803 lepB Signal peptidase I yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.367 18.766 2 0.010957 7063 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.191 44.49 230690000 9543200 9109700 11889000 0 1455900 1549500 19434000 16767000 14563000 6754400 4592700 3737200 15193000 17040000 14683000 0 0 0 30064000 22943000 24279000 1770800 2518100 2803700 17516 39 16972 325453;325454;325455;325456;325457;325458;325459;325460;325461;325462;325463;325464;325465;325466;325467;325468;325469;325470;325471;325472 198797;198798;198799;198800;198801 198798 5 RGDSVSFDEYWK Unmodified 1487.6681 0.66810776 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.306 29.949 3 0.0022875 13593 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 64.827 64.363 460570000 34035000 26577000 24091000 0 0 0 49068000 42794000 35290000 0 0 0 30504000 40752000 29970000 0 0 0 52405000 54783000 40303000 0 0 0 17517 60 16973 325473;325474;325475;325476;325477;325478;325479;325480;325481;325482;325483;325484 198802;198803 198802 2 RGDYAVNVNYNVQNAGEKPLEISSFGQLK Unmodified 3209.6105 0.61053989 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 2 1 1 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 38.766 37.114 3;4 1.533E-23 17163 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 176.85 171.25 779690000 9672200 7223300 24962000 8349000 9636700 9034700 44510000 10649000 13470000 29502000 24267000 27197000 66399000 61720000 52593000 8504900 6572700 6061900 105030000 93562000 108500000 17218000 18520000 16534000 17518 1267 16974 325485;325486;325487;325488;325489;325490;325491;325492;325493;325494;325495;325496;325497;325498;325499;325500;325501;325502;325503;325504;325505;325506;325507;325508;325509;325510;325511;325512;325513;325514;325515;325516;325517;325518;325519;325520;325521 198804;198805;198806;198807;198808;198809;198810;198811;198812;198813;198814;198815;198816;198817;198818;198819;198820;198821;198822;198823;198824;198825;198826;198827;198828;198829 198829 25 RGDYLGATVQVIPHITNAIK Unmodified 2165.1957 0.1956867 337 P0A7E5 pyrG CTP synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 38.582 36.766 3;4 1.8511E-14 17078 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 135.49 131.96 2931000000 178190000 138770000 133750000 4324200 2878500 4014500 297540000 252290000 247260000 6112600 6470700 8268200 193440000 225910000 168780000 2030100 0 0 380090000 348310000 317440000 6206800 3895900 5007100 17519 337 16975 325522;325523;325524;325525;325526;325527;325528;325529;325530;325531;325532;325533;325534;325535;325536;325537;325538;325539;325540;325541;325542;325543;325544;325545;325546;325547;325548;325549;325550;325551;325552;325553;325554;325555;325556;325557;325558;325559;325560;325561;325562;325563;325564 198830;198831;198832;198833;198834;198835;198836;198837;198838;198839;198840;198841;198842;198843;198844;198845;198846;198847;198848;198849;198850;198851;198852;198853;198854 198849 24 RGEDASWLPAFSPAELQK Unmodified 2000.9956 0.99558991 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 1 2 1 1 1 44.497 43.036 2;3 1.5761E-13 20999 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 145.1 142.79 303460000 56231000 66079000 60210000 0 0 0 16305000 20878000 19554000 0 0 0 10699000 9049600 8477100 0 0 0 12289000 12916000 10768000 0 0 0 17520 1278 16976 325565;325566;325567;325568;325569;325570;325571;325572;325573;325574;325575;325576;325577;325578;325579;325580;325581 198855;198856;198857;198858;198859;198860;198861 198860 7 RGEDISAGAVVFPAGTR Unmodified 1701.8798 0.87983187 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 29.456 28.2 2;3 5.0632E-52 13010 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 294 252.84 754240000 92478000 81499000 83076000 0 0 0 68744000 64118000 59257000 0 0 0 52116000 46931000 45273000 0 0 0 54537000 51744000 54472000 0 0 0 17521 1076 16977 325582;325583;325584;325585;325586;325587;325588;325589;325590;325591;325592;325593;325594;325595;325596;325597;325598;325599;325600;325601;325602;325603;325604;325605 198862;198863;198864;198865;198866;198867;198868;198869;198870;198871;198872;198873;198874;198875;198876;198877;198878;198879;198880;198881;198882;198883;198884;198885 198876 24 RGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWK Unmodified 4470.0533 0.053264082 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.098 42.583 5 4.9418E-19 20773 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 120.47 116.97 280900000 36798000 23981000 28608000 0 0 0 30207000 14943000 18214000 0 0 0 20589000 16594000 14169000 0 0 0 24011000 33207000 19578000 0 0 0 17522 1650 16978 325606;325607;325608;325609;325610;325611;325612;325613;325614;325615;325616;325617 198886 198886 1 RGEIDKK Unmodified 844.47667 0.47666558 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 4 2 3 1 1 1 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 6.3842 7.0106 1;2 0.0010588 666 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 116.37 74.719 14938000000 344170000 354630000 296780000 1172000000 1169300000 1433900000 55618000 56722000 48854000 271640000 292270000 302440000 230150000 214260000 246650000 74116000 27352000 50651000 507630000 547280000 425400000 2161000000 2224300000 2431100000 17523 939 16979 325618;325619;325620;325621;325622;325623;325624;325625;325626;325627;325628;325629;325630;325631;325632;325633;325634;325635;325636;325637;325638;325639;325640;325641;325642;325643;325644;325645;325646;325647;325648;325649;325650;325651;325652;325653;325654;325655;325656;325657;325658;325659;325660;325661;325662;325663 198887;198888;198889;198890;198891;198892;198893;198894;198895;198896;198897;198898;198899;198900;198901;198902;198903;198904;198905;198906;198907;198908;198909;198910;198911;198912;198913;198914;198915;198916;198917;198918;198919;198920;198921;198922;198923;198924;198925;198926 198915 40 RGELGIMGTELNSELAK Unmodified 1816.9353 0.93529784 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 35.81 34.224 2;3 4.7563E-31 16439 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 236.3 216.66 2609500000 164100000 162700000 139060000 19183000 20948000 21640000 176140000 182760000 175470000 60166000 73604000 52322000 169040000 165080000 186570000 22140000 20487000 14205000 208770000 210140000 208380000 46839000 58378000 51378000 17524 1044 16980 325664;325665;325666;325667;325668;325669;325670;325671;325672;325673;325674;325675;325676;325677;325678;325679;325680;325681;325682;325683;325684;325685;325686;325687;325688;325689;325690;325691;325692;325693;325694;325695;325696;325697;325698;325699;325700;325701;325702;325703;325704;325705;325706;325707;325708;325709;325710 198927;198928;198929;198930;198931;198932;198933;198934;198935;198936;198937;198938;198939;198940;198941;198942;198943;198944;198945;198946;198947;198948;198949;198950;198951;198952;198953;198954;198955;198956;198957;198958;198959;198960;198961;198962;198963;198964;198965;198966 198946 38 RGELLFGTVDTWLIWK Unmodified 1933.0462 0.046168917 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1 2 4 3 1 1 1 3 4 3 1 1 1 3 3 3 1 1 1 54.81 53.458 2;3 1.2258E-18 25229 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 205.72 195.88 3968900000 36511000 30606000 27270000 3066400 2989100 2275200 455500000 457040000 414610000 5881400 4764700 6000300 444400000 420740000 364500000 8639000 10940000 12318000 456330000 408470000 379140000 6000900 5371900 5517500 17525 239 16981 325711;325712;325713;325714;325715;325716;325717;325718;325719;325720;325721;325722;325723;325724;325725;325726;325727;325728;325729;325730;325731;325732;325733;325734;325735;325736;325737;325738;325739;325740;325741;325742;325743;325744;325745;325746;325747;325748;325749;325750;325751;325752;325753;325754;325755 198967;198968;198969;198970;198971;198972;198973;198974;198975;198976;198977;198978;198979;198980;198981;198982;198983;198984;198985 198983 19 RGENGLK Unmodified 772.41915 0.4191507 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.147 10.328 2 0.093061 1810 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 58.604 17.919 98849000 0 0 0 0 0 0 1035700 0 0 21492000 18086000 15759000 0 0 0 6013500 2968800 3395400 0 0 0 9521100 12581000 7995900 17526 1210 16982 325756;325757;325758;325759;325760;325761;325762;325763;325764;325765 198986;198987 198987 2 RGESSGPDVSR Unmodified 1145.5425 0.54251332 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 1 2 2 2 3 2 2 2 2 2 2 2 2 2 9.5464 10.151 2;3 1.2902E-10 1969 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 197.73 156.3 2328200000 268080000 240900000 194410000 9433000 8683100 7687400 66874000 54593000 52469000 82720000 35552000 56931000 169210000 162520000 33944000 19614000 9879300 8438600 266180000 229860000 260670000 24986000 26150000 38370000 17527 245 16983 325766;325767;325768;325769;325770;325771;325772;325773;325774;325775;325776;325777;325778;325779;325780;325781;325782;325783;325784;325785;325786;325787;325788;325789;325790;325791;325792;325793;325794;325795;325796;325797;325798;325799;325800;325801;325802;325803;325804;325805;325806;325807 198988;198989;198990;198991;198992;198993;198994;198995;198996;198997;198998;198999;199000;199001;199002;199003;199004;199005;199006;199007;199008;199009;199010;199011;199012;199013;199014;199015;199016;199017;199018;199019 198992 32 RGETIALVGESGSGK Unmodified 1459.7631 0.76307078 557 P0A9T8 ybbA Uncharacterized ABC transporter ATP-binding protein YbbA yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 1 1 2 1 2 1 2 1 1 1 2 1 1 2 1 1 17.489 18.004 2;3 0.0069748 6704 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 61.423 36.568 67392000 5254200 3279200 3103300 1590600 0 623250 12394000 3152200 10920000 1639300 1058400 1372800 0 6971400 1733200 0 0 1865700 0 6862900 5028200 0 543700 0 17528 557 16984 325808;325809;325810;325811;325812;325813;325814;325815;325816;325817;325818;325819;325820;325821;325822;325823;325824;325825;325826;325827;325828;325829;325830 199020;199021 199020 1 RGEVISIVETR Unmodified 1257.7041 0.70409934 1434 P33937 napA Periplasmic nitrate reductase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 21.814 22.023 2 0.0032362 8528 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 69.672 49.885 30312000 4366600 6341100 4762700 0 0 0 0 0 0 0 0 0 4859200 3278700 3858600 0 0 0 0 0 2845300 0 0 0 17529 1434 16985 325831;325832;325833;325834;325835;325836;325837 199022 199022 1 RGEVQAAK Unmodified 857.47191 0.47191456 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.5948 8.1067 2 0.0042586 906 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 92.47 43.71 78658000 0 0 0 2851600 2838500 2750600 11075000 13453000 0 7354300 5733100 5621600 0 9202700 5495400 1147200 1589400 1292200 0 0 0 3020600 2560500 2673000 17530 1417 16986 325838;325839;325840;325841;325842;325843;325844;325845;325846;325847;325848;325849;325850;325851;325852;325853;325854 199023;199024;199025;199026;199027;199028;199029 199023 7 RGEVVGAVSIQHQALPSCLVDK Unmodified 2362.2427 0.24271325 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 2 2 1 2 2 1 1 2 2 2 1 1 30.071 28.805 3;4 1.9701E-10 9726 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 126.45 122.18 171330000 8878900 0 20021000 0 0 0 14758000 5411400 11981000 5512000 2089700 3956700 7050700 3121200 3396700 28432000 23182000 26692000 3018200 3832900 0 0 0 0 17531 456 16987 325855;325856;325857;325858;325859;325860;325861;325862;325863;325864;325865;325866;325867;325868;325869;325870;325871;325872;325873;325874;325875;325876;325877;325878;325879 199030;199031;199032;199033;199034;199035;199036;199037;199038 199031 8 RGFAVTPPELTK Unmodified 1314.7296 0.7295858 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 1 3 2 2 2 26.157 24.995 2;3 2.3127E-05 11565 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.24 117.68 4884600000 700600000 618010000 644510000 0 0 390310 438690000 398350000 386290000 0 0 0 104330000 113480000 239580000 0 0 0 427340000 409600000 403400000 0 0 0 17532 1652 16988 325880;325881;325882;325883;325884;325885;325886;325887;325888;325889;325890;325891;325892;325893;325894;325895;325896;325897;325898;325899;325900;325901;325902;325903;325904 199039;199040;199041;199042;199043;199044;199045;199046;199047;199048;199049;199050;199051;199052;199053;199054;199055;199056;199057;199058;199059;199060;199061 199041 21 RGFEGGQMPLYR Unmodified 1409.6874 0.68740341 68 P02413 rplO 50S ribosomal protein L15 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 23.823 22.958 2;3 3.0768E-05 9860 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.1 103.62 1081100000 156110000 0 114970000 9884900 10022000 9696000 49629000 41914000 53448000 15596000 15724000 12775000 70065000 52842000 43154000 22617000 16397000 16229000 102960000 107620000 102360000 18737000 19076000 19305000 17533 68 16989 325905;325906;325907;325908;325909;325910;325911;325912;325913;325914;325915;325916;325917;325918;325919;325920;325921;325922;325923;325924;325925;325926;325927;325928;325929;325930;325931;325932;325933;325934;325935;325936;325937;325938;325939;325940;325941;325942;325943;325944;325945;325946;325947;325948 199062;199063;199064;199065;199066;199067;199068;199069;199070;199071;199072;199073;199074;199075;199076;199077;199078;199079;199080;199081;199082;199083;199084;199085;199086;199087;199088;199089 199085 25 RGFEMDFAELLLEDYK Oxidation (M) 1990.9346 0.93462914 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 1 1 By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 53.624 52.112 3 0.00014767 25726 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 69.188 69.101 58269000 5353300 3815600 2735100 0 0 0 19319000 13853000 13194000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17534 1755;1756 16990 325949;325950;325951;325952;325953;325954 199090;199091 199091 607 2 RGFEMDFAELLLEDYK Unmodified 1974.9397 0.93971451 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 1 2 2 2 2 2 2 54.63 53.175 2;3 1.4346E-23 26425 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 262.3 249.53 6204200000 603550000 552080000 545540000 0 2772000 0 1382400000 1469500000 1270100000 12756000 12434000 11618000 68040000 56058000 61817000 0 0 0 56517000 44930000 54040000 0 0 0 17535 1755;1756 16990 325955;325956;325957;325958;325959;325960;325961;325962;325963;325964;325965;325966;325967;325968;325969;325970;325971;325972;325973;325974;325975;325976;325977;325978;325979;325980;325981;325982;325983 199092;199093;199094;199095;199096;199097;199098;199099;199100;199101;199102;199103;199104;199105;199106 199093 15 RGFEYSDCWVDDAR Unmodified 1774.7369 0.73693238 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 31.061 29.541 2;3 5.4051E-45 11309 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 282.89 282.89 1372600000 0 3378600 4031300 1399600 2118300 1945100 140550000 130140000 146880000 141880000 138150000 167670000 59226000 51911000 50003000 19754000 18753000 18154000 62668000 62187000 65030000 28275000 29283000 29236000 17536 1088 16991 325984;325985;325986;325987;325988;325989;325990;325991;325992;325993;325994;325995;325996;325997;325998;325999;326000;326001;326002;326003;326004;326005;326006;326007;326008;326009;326010;326011;326012;326013;326014;326015;326016;326017;326018;326019;326020;326021 199107;199108;199109;199110;199111;199112;199113;199114;199115;199116;199117;199118;199119;199120;199121;199122;199123;199124;199125;199126;199127;199128;199129;199130;199131;199132;199133;199134;199135;199136 199112 29 RGGADGIAAINTVK Unmodified 1341.7365 0.7364621 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 17.825 18.424 2 6.0477E-08 6877 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 156.69 118.41 161900000 0 0 0 0 0 0 36903000 44798000 37674000 0 0 1178300 10268000 10223000 8083100 0 0 0 3466700 5833500 3476000 0 0 0 17537 1276 16992 326022;326023;326024;326025;326026;326027;326028;326029;326030;326031 199137;199138;199139;199140;199141 199139 5 RGGDLGEFR Unmodified 1005.4992 0.49919194 534 P0A9L5 ppiC Peptidyl-prolyl cis-trans isomerase C yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.754 14.664 2 2.9445E-05 4695 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.84 119.66 609420000 42449000 45635000 44013000 1001300 1078800 1257000 58016000 53556000 56249000 0 0 0 41782000 36443000 39273000 0 0 0 60040000 66478000 62146000 0 0 0 17538 534 16993 326032;326033;326034;326035;326036;326037;326038;326039;326040;326041;326042;326043;326044;326045;326046 199142;199143;199144;199145;199146;199147;199148;199149;199150;199151;199152;199153 199150 12 RGGFESYQER Unmodified 1227.5632 0.56324876 1174 P21179 katE Catalase HPII yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.274 13.042 2 4.2974E-06 3713 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143.5 97.486 225340000 35685000 43549000 37748000 0 0 0 0 34853000 32283000 0 604960 0 6921300 7804700 0 0 0 0 0 14520000 11373000 0 0 0 17539 1174 16994 326047;326048;326049;326050;326051;326052;326053;326054;326055;326056;326057 199154;199155;199156 199154 3 RGGGLCLGGK Unmodified 973.51273 0.51273351 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 12.025 12.884 2 0.11876 3580 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 74.127 28.409 339180000 86979000 49174000 71087000 0 0 0 0 0 0 0 0 0 13491000 13911000 17378000 0 0 0 29916000 27737000 29511000 0 0 0 17540 1444 16995 326058;326059;326060;326061;326062;326063;326064;326065;326066 199157;199158 199158 0 RGGLDINPWR Unmodified 1182.6258 0.62578944 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 1 2 2 2 27.866 26.842 2;3 0.00013024 12308 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 96.143 89.702 110350000 7686400 0 9270300 0 0 0 0 0 0 0 0 0 9520500 12286000 7447200 0 0 0 21243000 20006000 22891000 0 0 0 17541 1966 16996 326067;326068;326069;326070;326071;326072;326073;326074;326075;326076;326077;326078;326079 199159;199160;199161;199162;199163;199164;199165 199162 7 RGGVVQYVDASR Unmodified 1305.6789 0.67894722 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 4 4 3 2 2 2 5 5 6 1 1 2 4 4 4 16.511 16.893 1;2;3 1.3836E-49 4607 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 305.74 258.55 44870000000 400500000 393370000 228990000 25751000 24039000 27396000 314750000 292690000 278770000 3592700000 3471200000 3185900000 281080000 272550000 262900000 7377800000 5416300000 5723400000 180930000 164650000 357720000 4146100000 4463800000 3986500000 17542 463 16997 326080;326081;326082;326083;326084;326085;326086;326087;326088;326089;326090;326091;326092;326093;326094;326095;326096;326097;326098;326099;326100;326101;326102;326103;326104;326105;326106;326107;326108;326109;326110;326111;326112;326113;326114;326115;326116;326117;326118;326119;326120;326121;326122;326123;326124;326125;326126;326127;326128;326129;326130;326131;326132;326133;326134;326135;326136;326137;326138;326139;326140;326141;326142;326143;326144;326145;326146 199166;199167;199168;199169;199170;199171;199172;199173;199174;199175;199176;199177;199178;199179;199180;199181;199182;199183;199184;199185;199186;199187;199188;199189;199190;199191;199192;199193;199194;199195;199196;199197;199198;199199;199200;199201;199202;199203;199204;199205;199206;199207;199208;199209;199210;199211;199212;199213;199214;199215;199216;199217;199218;199219;199220;199221;199222;199223;199224;199225;199226;199227;199228 199199 56 RGHIPGALNVPWTELVR Unmodified 1914.0588 0.058799289 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.121 37.447 4 0.15973 18197 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 13.832 9.8639 78545000 9648500 6266500 6327000 0 0 0 10658000 7771200 8833800 0 0 0 5785600 4883000 3032800 0 0 0 5498000 5590200 4250000 0 0 0 17543 1364 16998 326147;326148;326149;326150;326151;326152;326153;326154;326155;326156;326157;326158 199229;199230 199229 0 RGIDMFDCVMPTR Unmodified 1596.7211 0.72108808 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 36.502 36.094 3 0.018826 12427 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 47.037 43.716 7735800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1008700 0 4057800 2669300 0 0 0 0 0 0 17544 395 16999 326159;326160;326161 199231 199231 0 RGIEEAYR Unmodified 992.50394 0.50394296 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 12.107 12.696 2 9.1359E-05 3518 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.52 106.16 829470000 48619000 56071000 53502000 0 0 3234400 56069000 62899000 56929000 16572000 13404000 12746000 71155000 58367000 52902000 3658800 3977600 3655900 82677000 75927000 74971000 7549000 7337000 7241400 17545 882 17000 326162;326163;326164;326165;326166;326167;326168;326169;326170;326171;326172;326173;326174;326175;326176;326177;326178;326179;326180;326181;326182;326183;326184;326185 199232;199233;199234;199235;199236;199237;199238;199239;199240;199241;199242;199243;199244;199245;199246 199243 15 RGIEGSSLDVPENIVHSGK Unmodified 1993.0229 0.022867292 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.69 24.617 3;4 3.1609E-10 11119 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.01 123.16 960080000 124530000 131340000 118660000 0 0 0 86864000 88948000 73232000 0 0 0 46615000 42918000 39637000 0 0 0 70198000 74947000 62196000 0 0 0 17546 423 17001 326186;326187;326188;326189;326190;326191;326192;326193;326194;326195;326196;326197;326198;326199;326200;326201;326202;326203;326204;326205;326206;326207;326208;326209 199247;199248;199249;199250;199251;199252;199253;199254;199255;199256;199257;199258;199259;199260;199261;199262;199263;199264;199265 199252 19 RGIEVGHIFQLGTK Unmodified 1553.8678 0.86781062 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 2 2 1 1 2 30.103 28.748 3;4 7.1622E-06 12835 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 85.006 81.844 168330000 12443000 13389000 11031000 0 0 0 16076000 2972400 12862000 0 0 0 16032000 17719000 14140000 0 0 0 15911000 13551000 22205000 0 0 0 17547 1120 17002 326210;326211;326212;326213;326214;326215;326216;326217;326218;326219;326220;326221;326222;326223;326224;326225 199266;199267;199268;199269;199270;199271;199272;199273;199274;199275 199273 9 RGIGYLPQEASIFR Unmodified 1605.8627 0.86272524 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.159 35.254 3 6.3688E-05 14056 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 85.536 84.711 73231000 4803600 3114800 0 0 2025500 2039200 2040000 6909000 6865600 5454800 6412900 6501600 4152900 0 0 0 0 0 6337100 5749200 5395300 0 3251200 2178700 17548 559 17003 326226;326227;326228;326229;326230;326231;326232;326233;326234;326235;326236;326237;326238;326239;326240;326241 199276;199277 199277 2 RGIPVFNAPFSNTR Unmodified 1574.8318 0.83175947 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 33.66 32.208 3 3.6047E-09 15089 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 127.78 122.93 60185000 16974000 13281000 12041000 0 0 0 2923600 0 3795600 0 0 0 0 0 2989600 0 0 0 8180100 0 0 0 0 0 17549 555 17004 326242;326243;326244;326245;326246;326247;326248 199278;199279;199280 199280 3 RGLSIQR Unmodified 828.49298 0.49298435 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.969 12.562 2 0.0023593 2852 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 122.13 47.296 790770000 0 0 0 6296500 8434700 8127000 71084000 69825000 74643000 31662000 23938000 24525000 58652000 46134000 38919000 18787000 14824000 10984000 88874000 73912000 74337000 14319000 15226000 17262000 17550 883 17005 326249;326250;326251;326252;326253;326254;326255;326256;326257;326258;326259;326260;326261;326262;326263;326264;326265;326266;326267;326268;326269 199281;199282;199283;199284;199285;199286;199287;199288;199289;199290;199291;199292 199283 12 RGLTSTNR Unmodified 903.48863 0.48862725 662 P0ABJ3 cyoC Cytochrome bo(3) ubiquinol oxidase subunit 3 yes yes 0 0 1 By matching By MS/MS 1 1 5.4805 6.4147 2 0.097137 1212 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 53.968 31.346 11040000 0 0 0 0 0 0 0 0 0 0 0 0 5973700 0 5066300 0 0 0 0 0 0 0 0 0 17551 662 17006 326270;326271 199293 199293 1 RGNDYSILNTVSENLTYKPER Unmodified 2468.2296 0.2295656 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 37.7 36.004 3;4 4.134E-18 17358 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.95 142.56 369720000 59259000 49300000 44606000 9098700 8728100 9347600 26820000 29066000 24828000 0 0 0 16369000 13369000 4249500 0 0 0 24643000 23028000 23286000 0 0 3726900 17552 235 17007 326272;326273;326274;326275;326276;326277;326278;326279;326280;326281;326282;326283;326284;326285;326286;326287;326288;326289;326290;326291;326292;326293;326294;326295;326296;326297;326298;326299;326300;326301 199294;199295;199296;199297;199298;199299;199300;199301;199302;199303;199304;199305;199306;199307 199305 13 RGNHEVMMR Unmodified 1128.5281 0.528066 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 1 1 2 2 2 1 10.354 11.151 2;3 1.2816E-06 2549 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.94 160.58 838150000 226210000 205570000 159800000 0 0 0 45636000 55978000 41467000 0 0 0 7313200 0 8901600 0 0 0 33122000 33779000 20366000 0 0 0 17553 1254 17008 326302;326303;326304;326305;326306;326307;326308;326309;326310;326311;326312;326313;326314;326315;326316;326317;326318;326319;326320 199308;199309;199310;199311;199312;199313;199314 199314 7 RGPAIAQAFDAEGKPSK Unmodified 1741.9111 0.911132 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 2 2 1 1 3 3 1 1 3 1 3 3 3 2 1 2 3 3 3 1 1 1 17.094 17.658 2;3;4 1.3067E-11 6479 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.32 126.44 3049100000 316260000 266470000 173700000 8054500 5153400 3211900 320600000 273860000 204830000 13481000 16903000 10879000 159730000 152790000 147390000 8162800 4355000 5562500 335410000 319550000 283580000 6001400 6231000 6938800 17554 62 17009 326321;326322;326323;326324;326325;326326;326327;326328;326329;326330;326331;326332;326333;326334;326335;326336;326337;326338;326339;326340;326341;326342;326343;326344;326345;326346;326347;326348;326349;326350;326351;326352;326353;326354;326355;326356;326357;326358;326359;326360;326361;326362;326363;326364;326365;326366;326367;326368;326369;326370 199315;199316;199317;199318;199319;199320;199321;199322;199323;199324;199325;199326;199327;199328;199329;199330;199331;199332;199333;199334;199335;199336;199337;199338;199339;199340;199341;199342;199343;199344;199345 199320 29 RGQDDAIMEEHQIQPIDMVVVNLYPFAQTVAR Unmodified 3682.8236 0.8235859 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 54.439 53.037 4 5.5158E-25 26148 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.03 162.3 324800000 98705000 101390000 93786000 0 0 0 0 0 0 0 0 0 0 0 7063700 0 0 0 7620600 7259500 8975500 0 0 0 17555 1111 17010 326371;326372;326373;326374;326375;326376;326377 199346;199347;199348 199347 3 RGQTVLDLAGGTGDLTAK Unmodified 1771.9428 0.94282606 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 31.776 30.258 2;3 1.0284E-44 14550 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 248.67 230.87 952570000 49545000 57116000 51991000 15115000 12735000 13248000 75575000 74723000 76160000 25171000 23875000 28632000 52401000 53371000 54190000 0 2911100 3208200 80100000 85450000 80240000 13745000 10170000 12900000 17556 408 17011 326378;326379;326380;326381;326382;326383;326384;326385;326386;326387;326388;326389;326390;326391;326392;326393;326394;326395;326396;326397;326398;326399;326400;326401;326402;326403;326404;326405;326406;326407;326408;326409;326410;326411;326412;326413;326414;326415;326416;326417;326418;326419;326420;326421 199349;199350;199351;199352;199353;199354;199355;199356;199357;199358;199359;199360;199361;199362;199363;199364;199365;199366;199367;199368;199369;199370;199371;199372;199373;199374;199375;199376;199377;199378;199379;199380;199381;199382;199383;199384;199385 199358 37 RGSAIDLPVYSYVEHTR Unmodified 1961.9959 0.99592426 425 P0A8F4 udk Uridine kinase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 33.809 31.776 3;4 2.4098E-06 12242 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 89.261 85.293 22847000 0 0 0 1417700 733740 0 0 0 5106900 5136900 5640800 4810700 0 0 0 0 0 0 0 0 0 0 0 0 17557 425 17012 326422;326423;326424;326425;326426;326427;326428;326429 199386;199387;199388 199388 2 RGSLPIALDEVITDGHK Unmodified 1819.9792 0.97921156 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 1 1 1 3 3 3 1 2 2 3 3 3 1 1 1 3 3 3 2 1 2 35.138 33.601 2;3;4 3.8493E-31 16367 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 238.65 230.92 3329400000 357870000 313060000 291900000 2574500 3040300 3058400 428170000 443690000 437190000 10807000 12803000 14551000 172180000 156690000 174820000 4114700 1927700 1327500 130420000 184750000 154710000 11206000 2314900 16183000 17558 548 17013 326430;326431;326432;326433;326434;326435;326436;326437;326438;326439;326440;326441;326442;326443;326444;326445;326446;326447;326448;326449;326450;326451;326452;326453;326454;326455;326456;326457;326458;326459;326460;326461;326462;326463;326464;326465;326466;326467;326468;326469;326470;326471;326472;326473;326474;326475;326476;326477;326478;326479;326480;326481 199389;199390;199391;199392;199393;199394;199395;199396;199397;199398;199399;199400;199401;199402;199403;199404;199405;199406;199407;199408;199409;199410;199411;199412;199413;199414;199415;199416;199417;199418;199419;199420;199421 199398 33 RGSLPIALDEVITDGHKR Unmodified 1976.0803 0.080322592 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 5 4 3 3 3 3 3 5 3 2 3 3 3 3 2 4 3 30.091 28.492 3;4;5 1.0695E-13 13710 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.16 136.66 1886900000 75198000 69140000 66219000 109820000 100890000 107190000 154410000 165000000 137790000 116150000 106180000 89406000 42326000 41377000 45943000 0 0 0 57737000 49374000 46026000 94762000 100860000 111100000 17559 548 17014 326482;326483;326484;326485;326486;326487;326488;326489;326490;326491;326492;326493;326494;326495;326496;326497;326498;326499;326500;326501;326502;326503;326504;326505;326506;326507;326508;326509;326510;326511;326512;326513;326514;326515;326516;326517;326518;326519;326520;326521;326522;326523;326524;326525;326526;326527;326528;326529;326530;326531;326532;326533;326534;326535;326536;326537;326538;326539;326540;326541;326542;326543;326544;326545;326546 199422;199423;199424;199425;199426;199427;199428;199429;199430;199431;199432;199433;199434;199435;199436;199437;199438;199439;199440;199441;199442;199443;199444;199445;199446;199447;199448;199449;199450;199451;199452;199453;199454;199455;199456;199457;199458;199459;199460;199461;199462;199463;199464;199465;199466;199467 199429 46 RGTENEDFMFLNLGPNHPSAHGAFR Unmodified 2813.3092 0.30922968 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 34.608 32.928 4;5 6.4193E-05 13358 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.132 80.112 455620000 0 0 7813800 10346000 12947000 11475000 34076000 33643000 34742000 26970000 39011000 33770000 15793000 14002000 12315000 7361200 4023500 7052600 21403000 14808000 22625000 30629000 30084000 30730000 17560 1426 17015 326547;326548;326549;326550;326551;326552;326553;326554;326555;326556;326557;326558;326559;326560;326561;326562;326563;326564;326565;326566;326567;326568;326569;326570;326571;326572;326573;326574;326575;326576;326577;326578;326579;326580 199468;199469;199470;199471;199472;199473;199474;199475 199470 8 RGTGQTLYILDEPTTGLHFADIQQLLDVLHK Unmodified 3491.8413 0.8412681 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 53.604 53.66 4;5 1.0546E-17 19923 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 140.55 140.5 486560000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 107070000 153650000 225850000 0 0 0 0 0 0 17561 222 17016 326581;326582;326583;326584;326585;326586 199476;199477;199478;199479;199480 199478 5 RGTVIDHIPAQIGFK Unmodified 1650.9206 0.92057447 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 3 3 3 1 1 1 1 1 29.549 28.42 2;3;4 1.0898E-08 13138 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.74 147.77 430830000 133440000 134790000 140780000 2258600 0 0 0 0 0 0 0 0 0 0 0 0 496940 0 7143900 7142000 4782700 0 0 0 17562 339 17017 326587;326588;326589;326590;326591;326592;326593;326594;326595;326596;326597;326598;326599;326600 199481;199482;199483;199484;199485;199486;199487;199488;199489;199490 199490 9 RGVANTVLIEK Unmodified 1198.7034 0.70337105 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.087 16.902 2;3 1.5355E-07 5537 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 171.56 117.41 1856500000 58367000 56992000 66912000 0 0 0 257450000 302780000 295600000 0 0 0 158940000 138930000 145930000 0 0 0 137110000 120950000 116500000 0 0 0 17563 1806 17018 326601;326602;326603;326604;326605;326606;326607;326608;326609;326610;326611;326612;326613;326614;326615;326616;326617;326618;326619;326620;326621;326622;326623;326624 199491;199492;199493;199494;199495;199496;199497;199498;199499;199500;199501;199502;199503;199504;199505;199506 199503 16 RGVIKPR Unmodified 824.53446 0.53445523 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 5.2216 6.1044 2 0.015365 1204 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 106.76 96.576 43495000 0 0 0 0 0 0 8811400 7263800 5716800 0 0 0 3586200 3321200 4222500 0 0 0 4313800 3567000 2692300 0 0 0 17564 530 17019 326625;326626;326627;326628;326629;326630;326631;326632;326633 199507;199508 199507 2 RGVLAVMPDMDK Unmodified 1330.6737 0.67372718 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.037 27.511 3 0.018322 12875 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 45.115 35.92 2662800000 0 0 4779300 365250000 404190000 369670000 5327500 5325500 6827400 344290000 288570000 242850000 5685900 6479100 6028700 0 0 0 9100400 9705800 7766700 303130000 0 277770000 17565 107 17020 326634;326635;326636;326637;326638;326639;326640;326641;326642;326643;326644;326645;326646;326647;326648;326649;326650;326651 199509;199510;199511 199510 3 RGVLAVMPDMDKFPYTVR Unmodified 2094.0754 0.07543691 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 1 41.098 39.297 3;4 0.00010078 19032 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 73.76 70.372 556820000 21906000 22444000 17852000 21216000 18907000 16620000 47612000 46292000 40534000 7475100 5630900 7852500 38773000 30067000 38135000 0 0 0 53720000 46597000 51964000 8895500 9122400 5210300 17566 107 17021 326652;326653;326654;326655;326656;326657;326658;326659;326660;326661;326662;326663;326664;326665;326666;326667;326668;326669;326670;326671;326672;326673;326674;326675;326676;326677;326678;326679;326680;326681;326682;326683;326684;326685;326686;326687;326688;326689 199512;199513;199514;199515;199516;199517;199518;199519;199520;199521;199522;199523;199524;199525;199526;199527;199528;199529;199530;199531;199532;199533 199525 18 RGVLKPGVELVEPTSGNTGIALAYVAAAR Unmodified 2908.6134 0.61344042 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 1 42.276 40.514 3;4 5.1674E-23 19712 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 168.57 157.26 1177400000 120720000 113320000 108850000 6378800 5497300 4169900 111670000 101750000 103300000 0 2026000 2644900 63695000 72005000 48255000 0 0 0 95849000 105280000 109320000 2662700 0 0 17567 666 17022 326690;326691;326692;326693;326694;326695;326696;326697;326698;326699;326700;326701;326702;326703;326704;326705;326706;326707;326708;326709;326710;326711;326712;326713;326714;326715;326716;326717;326718;326719;326720 199534;199535;199536;199537;199538;199539;199540;199541;199542;199543;199544;199545;199546;199547;199548;199549;199550;199551;199552;199553;199554;199555 199541 21 RGVTQEQAQR Unmodified 1171.6058 0.60578227 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.5175 6.3834 2;3 0.0003328 1229 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 115.23 97.846 203590000 28172000 27120000 24139000 0 0 0 11505000 9884200 12978000 0 0 0 12918000 13349000 13182000 0 0 0 16948000 17428000 15968000 0 0 0 17568 1872 17023 326721;326722;326723;326724;326725;326726;326727;326728;326729;326730;326731;326732 199556;199557;199558;199559;199560 199556 3 RGWVQQYHIGALR Unmodified 1582.8481 0.84807823 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 24.145 23.24 3 0.00029958 10564 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 76.165 69.687 121620000 15638000 19142000 11647000 0 0 0 16844000 16604000 14466000 0 0 0 6044900 5006900 7096800 0 0 0 5391500 0 3738900 0 0 0 17569 427 17024 326733;326734;326735;326736;326737;326738;326739;326740;326741;326742;326743 199561;199562;199563;199564;199565 199561 2 RGYTAASIR Unmodified 993.53558 0.53557744 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.785 12.424 2 1.89E-05 3431 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.79 99.434 634180000 40011000 39056000 44973000 0 0 0 54976000 55700000 60889000 6981600 5295800 7903600 50835000 40119000 32000000 0 0 0 62952000 63241000 56696000 5975500 3785500 2788200 17570 63 17025 326744;326745;326746;326747;326748;326749;326750;326751;326752;326753;326754;326755;326756;326757;326758;326759;326760;326761;326762;326763 199566;199567;199568;199569;199570;199571 199566 6 RHAQEEMTHMQR Unmodified 1552.6987 0.69871316 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.339 11.062 3 3.5942E-11 2021 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 138.24 133.53 230650000 0 0 0 0 0 0 33935000 43075000 46225000 11362000 7340000 0 15014000 15559000 14347000 0 0 0 17839000 13548000 12404000 0 0 0 17571 501 17026 326764;326765;326766;326767;326768;326769;326770;326771;326772;326773;326774;326775 199572;199573;199574;199575;199576 199574 4 RHDEIFAAINAVSESDAQTR Unmodified 2229.0774 0.077422058 1766 P75736 ybfF Esterase YbfF yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 2 1 1 2 34.045 32.591 3;4 0.088427 15746 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 30.587 27.578 103880000 8198800 13186000 14116000 0 0 0 5258500 9809100 5791000 0 0 0 0 13546000 0 0 0 0 6520100 9870700 17585000 0 0 0 17572 1766 17027 326776;326777;326778;326779;326780;326781;326782;326783;326784;326785;326786;326787 199577;199578;199579;199580;199581 199577 0 RHDKEQV Unmodified 910.46208 0.46207815 1732 P69428 tatA Sec-independent protein translocase protein TatA yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 9.2837 9.4173 2 0.074341 1554 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 79.116 74.291 41059000 0 0 0 0 0 0 0 0 0 7303800 7114700 7268300 0 0 0 1880900 608090 524460 0 0 0 5785500 4936200 5637000 17573 1732 17028 326788;326789;326790;326791;326792;326793;326794;326795;326796 199582;199583;199584 199582 3 RHDPDEADR Unmodified 1109.485 0.48499844 465 P0A8W0 nanR Transcriptional regulator NanR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 6.6753 7.4078 2 0.00069954 1375 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.15 94.166 11743000 3636300 4112300 3994200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17574 465 17029 326797;326798;326799 199585;199586;199587 199585 3 RHEAWITLEK Unmodified 1281.683 0.68296996 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 3 2 2 2 2 2 2 2 2 2 3 3 3 2 1 3 3 3 2 2 2 18.064 18.523 2;3 2.0627E-06 7020 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 182.28 165.74 2890700000 188300000 173060000 228860000 30374000 32166000 28233000 239450000 228890000 245680000 49873000 28508000 8351300 154770000 161650000 202140000 34926000 0 1314300 297790000 237950000 227210000 31340000 30618000 29291000 17575 990 17030 326800;326801;326802;326803;326804;326805;326806;326807;326808;326809;326810;326811;326812;326813;326814;326815;326816;326817;326818;326819;326820;326821;326822;326823;326824;326825;326826;326827;326828;326829;326830;326831;326832;326833;326834;326835;326836;326837;326838;326839;326840;326841;326842;326843;326844;326845;326846;326847;326848;326849;326850;326851;326852 199588;199589;199590;199591;199592;199593;199594;199595;199596;199597;199598;199599;199600;199601;199602;199603;199604;199605;199606;199607;199608;199609;199610;199611;199612;199613 199592 25 RHGHNEADEPSATQPLMYQK Unmodified 2308.0655 0.065477163 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 13.323 14.188 3 6.7211E-07 4334 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.958 93 68625000 7825200 6612600 9261700 0 0 0 0 6606900 0 0 0 0 0 9174700 5072500 0 0 0 12026000 0 12045000 0 0 0 17576 937 17031 326853;326854;326855;326856;326857;326858;326859;326860 199614 199614 1 RHGLAPEEVLAFIHGK Unmodified 1772.9686 0.9685873 1922 P77625 yfbT Sugar phosphatase YfbT yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 34.641 33.175 4 0.0085895 15881 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 34.094 33.135 103080000 15964000 8602300 0 0 0 0 9373900 16158000 13232000 0 0 0 6589400 4745100 5345000 0 0 0 7595900 7541900 7932000 0 0 0 17577 1922 17032 326861;326862;326863;326864;326865;326866;326867;326868;326869;326870;326871 199615;199616;199617;199618 199618 1 RHGLDPAQMALAFVR Unmodified 1680.8882 0.88822849 556 P0A9T4 tas Protein tas yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.303 38.637 3 0.00020985 17938 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 59.248 57.425 92445000 8726300 8123700 7199000 0 0 0 10143000 11765000 11783000 0 0 0 4201800 4688100 4442000 0 0 0 7638500 5931100 7804500 0 0 0 17578 556 17033 326872;326873;326874;326875;326876;326877;326878;326879;326880;326881;326882;326883 199619;199620 199620 0 RHGLHTDASHR Unmodified 1285.6388 0.63881374 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 4.9775 5.8195 2;3 2.0942E-10 963 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 173.64 152.19 359180000 24109000 25439000 28648000 0 0 0 32194000 34898000 28536000 0 0 0 28692000 23812000 17905000 0 0 0 42312000 38513000 34125000 0 0 0 17579 161 17034 326884;326885;326886;326887;326888;326889;326890;326891;326892;326893;326894;326895;326896;326897;326898;326899;326900;326901;326902;326903;326904;326905;326906;326907 199621;199622;199623;199624;199625;199626;199627;199628;199629;199630;199631;199632;199633;199634;199635;199636;199637;199638;199639;199640;199641 199629 21 RHHLAGR Unmodified 845.47325 0.47325196 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 9.3948 9.4502 2 0.031517 1551 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 71.949 59.593 13551000 0 0 0 0 0 0 0 0 0 3475300 4325300 3749200 0 0 0 1177300 474860 348640 0 0 0 0 0 0 17580 30 17035 326908;326909;326910;326911;326912;326913 199642 199642 1 RHLSDTSQR Unmodified 1098.553 0.55301842 1414 P33225 torA Trimethylamine-N-oxide reductase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 4 2 2 2 2 1 2 1 2 2 2 9.7982 10.282 3 0.083079 1902 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 35.445 27.22 327130000 0 0 0 11793000 10347000 14673000 0 0 0 32042000 30647000 30396000 0 0 0 0 45854000 28027000 0 0 0 51087000 30056000 42203000 17581 1414 17036 326914;326915;326916;326917;326918;326919;326920;326921;326922;326923;326924;326925;326926;326927;326928;326929;326930;326931;326932;326933;326934;326935;326936;326937 199643;199644;199645;199646;199647;199648;199649;199650;199651;199652;199653;199654 199652 11 RHNIVAIADIDTR Unmodified 1492.811 0.81102402 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 20.613 21.063 3 0.01031 8269 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 55.724 51.094 60967000 21549000 15528000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8799000 10021000 5070700 0 0 0 17582 238 17037 326938;326939;326940;326941;326942 199655;199656;199657 199656 0 RHPDLVISSQGSNQLR Unmodified 1805.9496 0.94964277 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 2 2 2 1 2 2 2 1 2 1 2 2 2 2 1 1 16.627 17.229 3;4 1.5371E-06 5194 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 95.751 93.681 227760000 2990400 6815200 1932600 2666100 4373200 5617000 20782000 13837000 18003000 15938000 9895800 2454400 13972000 8538300 15221000 0 0 0 29124000 24503000 25868000 2898300 2328700 0 17583 997 17038 326943;326944;326945;326946;326947;326948;326949;326950;326951;326952;326953;326954;326955;326956;326957;326958;326959;326960;326961;326962;326963;326964;326965;326966;326967;326968;326969;326970;326971;326972;326973 199658;199659;199660;199661;199662;199663;199664 199658 6 RHPFEGVLHNMER Unmodified 1620.7943 0.7943281 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 2 2 1 1 2 2 2 1 2 2 1 18.217 18.401 3;4 0.00015416 5289 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 96.135 78.549 130670000 5561200 0 0 1515900 0 0 0 6930900 7154800 7068500 0 5157100 0 5471700 3945400 23402000 24085000 28398000 2600100 0 0 4621400 3233200 1525300 17584 222 17039 326974;326975;326976;326977;326978;326979;326980;326981;326982;326983;326984;326985;326986;326987;326988;326989;326990;326991;326992;326993;326994;326995 199665;199666;199667;199668;199669;199670 199666 6 RHPWVFSGAVAR Unmodified 1381.7367 0.73673687 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.172 20.411 3 0.026194 7741 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 32.624 29.673 109360000 5809800 7988000 5754600 707200 611410 921600 9158500 0 5198900 4734800 4593700 4137000 7458400 0 7967700 2947300 2688800 1938200 10013000 9174200 10158000 4308500 0 3090700 17585 1787 17040 326996;326997;326998;326999;327000;327001;327002;327003;327004;327005;327006;327007;327008;327009;327010;327011;327012;327013;327014;327015;327016 199671;199672;199673;199674 199673 0 RHSFISTLLGIK Unmodified 1370.8034 0.80341945 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.697 34.928 3 0.11103 15907 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 28.789 25.549 109560000 7422900 6266700 5912800 980060 820640 918950 9762200 9535400 10732000 709260 1139100 730760 7009000 4416100 5485100 0 0 0 11465000 12134000 12691000 0 765070 663870 17586 1218 17041 327017;327018;327019;327020;327021;327022;327023;327024;327025;327026;327027;327028;327029;327030;327031;327032;327033;327034;327035;327036 199675 199675 1 RIAADIDDSELKAPR Unmodified 1668.8795 0.87949752 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 20.634 20.604 3 5.0279E-07 6650 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 121.99 118.04 15773000 0 0 0 712470 874870 1021200 0 0 0 4548300 4846800 3769100 0 0 0 0 0 0 0 0 0 0 0 0 17587 1476 17042 327037;327038;327039;327040;327041;327042 199676;199677 199677 2 RIAEEGQR Unmodified 957.49919 0.49919194 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 5.1965 6.1253 2 2.888E-07 1282 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 156.75 105.56 16808000 0 0 0 0 0 0 0 0 0 0 0 0 0 8963500 0 0 0 0 0 7844900 0 0 0 0 17588 1741 17043 327043;327044;327045;327046 199678;199679;199680 199678 3 RIDAIDVTSK Unmodified 1116.6139 0.61388734 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.427 16.979 2 1.0815E-08 5002 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 185.6 154.53 962850000 19866000 18456000 20190000 4957800 4159200 5278600 66085000 68146000 75413000 7589900 10014000 19689000 51176000 49943000 51716000 6274000 4482200 4398600 100820000 102690000 88906000 54357000 54826000 73413000 17589 1067 17044 327047;327048;327049;327050;327051;327052;327053;327054;327055;327056;327057;327058;327059;327060;327061;327062;327063;327064;327065;327066;327067;327068;327069;327070 199681;199682;199683;199684;199685;199686;199687;199688;199689;199690;199691;199692;199693;199694;199695;199696;199697;199698;199699;199700;199701 199684 21 RIDNQLR Unmodified 913.50936 0.50936269 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.287 11.885 2 6.4944E-06 2460 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 194.25 89.452 846100000 26806000 23867000 24522000 6260000 7372800 8705800 39413000 34191000 41489000 59704000 53920000 52767000 33872000 28213000 39189000 52463000 41431000 52689000 35823000 37707000 44097000 31200000 34842000 35555000 17590 1057 17045 327071;327072;327073;327074;327075;327076;327077;327078;327079;327080;327081;327082;327083;327084;327085;327086;327087;327088;327089;327090;327091;327092;327093;327094 199702;199703;199704;199705;199706;199707;199708;199709;199710;199711;199712;199713;199714;199715 199703 14 RIDPVGACVGMR Unmodified 1329.6646 0.66455948 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 2 2 1 2 2 2 1 2 2 2 2 3 2 2 2 2 2 2 20.337 20.484 2;3 9.4755E-17 5773 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 238.51 227.35 1338300000 16837000 8514600 12601000 0 577600 385110 8848300 7281500 4117300 61278000 67326000 57996000 5797300 9883800 11756000 196920000 121710000 150210000 12804000 10055000 14135000 196620000 170580000 192030000 17591 935 17046 327095;327096;327097;327098;327099;327100;327101;327102;327103;327104;327105;327106;327107;327108;327109;327110;327111;327112;327113;327114;327115;327116;327117;327118;327119;327120;327121;327122;327123;327124;327125;327126;327127;327128;327129;327130;327131;327132;327133;327134;327135;327136 199716;199717;199718;199719;199720;199721;199722;199723;199724;199725;199726;199727;199728;199729;199730 199719 15 RIDQMEAEAESHSFGK Unmodified 1833.8316 0.83156105 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 2 2 2 3 3 2 2 2 3 2 2 1 1 1 2 3 3 2 1 20.552 20.785 2;3;4 2.7568E-18 8128 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 193.06 190.21 1741200000 160450000 180080000 133760000 38781000 42387000 41813000 125690000 138500000 147830000 39115000 40948000 37282000 80689000 92865000 72095000 10401000 7740800 11024000 102210000 102300000 110430000 23597000 0 1203500 17592 956 17047 327137;327138;327139;327140;327141;327142;327143;327144;327145;327146;327147;327148;327149;327150;327151;327152;327153;327154;327155;327156;327157;327158;327159;327160;327161;327162;327163;327164;327165;327166;327167;327168;327169;327170;327171;327172;327173;327174;327175;327176;327177;327178;327179;327180;327181;327182;327183;327184;327185;327186 199731;199732;199733;199734;199735;199736;199737;199738;199739;199740;199741;199742;199743;199744;199745;199746;199747;199748;199749;199750;199751;199752;199753 199750 23 RIDVQQVEK Unmodified 1113.6142 0.6142217 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.55 13.418 2 2.4663E-05 4027 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.83 106.12 748780000 55357000 63710000 65939000 3081300 2684200 0 63927000 63613000 52044000 0 0 0 66270000 56718000 54382000 0 0 0 62928000 71318000 66811000 0 0 0 17593 1649 17048 327187;327188;327189;327190;327191;327192;327193;327194;327195;327196;327197;327198;327199;327200 199754;199755;199756 199755 3 RIDVVINQVTISDER Unmodified 1755.9479 0.94791144 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.768 31.343 2;3 6.9158E-69 14898 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 357.91 331.79 1768900000 157060000 135420000 136100000 0 0 0 188170000 170750000 162530000 0 0 0 137410000 126940000 121330000 0 0 0 144540000 143800000 144870000 0 0 0 17594 874 17049 327201;327202;327203;327204;327205;327206;327207;327208;327209;327210;327211;327212;327213;327214;327215;327216;327217;327218;327219;327220;327221;327222;327223;327224 199757;199758;199759;199760;199761;199762;199763;199764;199765;199766;199767;199768;199769;199770;199771;199772;199773;199774;199775;199776;199777;199778;199779;199780 199770 24 RIDYAEAENLAQR Unmodified 1547.7692 0.76921879 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.73 22.927 3 2.5285E-05 8322 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 92.039 84.837 89647000 14084000 12904000 13189000 1356000 1516900 1193500 0 0 4232100 3247900 0 0 4296700 4763000 4219700 0 0 0 7119700 10282000 7241800 0 0 0 17595 1459 17050 327225;327226;327227;327228;327229;327230;327231;327232;327233;327234;327235;327236;327237;327238 199781 199781 1 RIEALAEDFSDK Unmodified 1392.6885 0.68850885 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.372 24.283 2 0.01142 10968 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 100.69 86.018 120770000 8119700 9609500 8850400 0 0 0 14944000 13272000 10026000 0 0 0 8948900 10114000 5771100 0 0 0 9368000 12609000 9140400 0 0 0 17596 1137 17051 327239;327240;327241;327242;327243;327244;327245;327246;327247;327248;327249;327250 199782;199783;199784 199783 0 RIEAVTGEGAIATVHADSDR Unmodified 2067.0345 0.034494611 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 1 3 3 3 3 3 3 20.869 21.178 2;3;4 3.8731E-30 8470 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 210.26 206.29 3141600000 234570000 239720000 215530000 0 0 2040000 265580000 284800000 297390000 3881100 0 0 235120000 247010000 249290000 0 0 0 320490000 255950000 290180000 0 0 0 17597 59 17052 327251;327252;327253;327254;327255;327256;327257;327258;327259;327260;327261;327262;327263;327264;327265;327266;327267;327268;327269;327270;327271;327272;327273;327274;327275;327276;327277;327278;327279;327280;327281;327282;327283;327284;327285;327286;327287;327288 199785;199786;199787;199788;199789;199790;199791;199792;199793;199794;199795;199796;199797;199798;199799;199800;199801;199802;199803;199804;199805;199806;199807;199808;199809;199810;199811;199812;199813;199814;199815;199816 199792 32 RIEAVTGEGAIATVHADSDRLSEVAHLLK Unmodified 3057.6207 0.62071064 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.199 38.082 5 0.095303 15117 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 30.104 30.09 31733000 0 0 0 2052000 3115000 2072400 0 0 0 4628000 6419800 5803300 0 0 0 0 0 0 0 0 0 3017900 2099400 2525700 17598 59 17053 327289;327290;327291;327292;327293;327294;327295;327296;327297 199817 199817 1 RIEDGINQVQCSVAEYPEAITYLLEQYDR Unmodified 3471.6616 0.66164876 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 54.945 55 3;4 2.4946E-31 20578 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 189.45 186.67 2394100000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 628220000 899520000 866360000 0 0 0 0 0 0 17599 36 17054 327298;327299;327300;327301;327302;327303 199818;199819;199820;199821;199822 199819 5 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEAR Unmodified 4256.0332 0.033180567 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 4 4 3 54.725 54.775 3;4;5;6 6.3011E-119 20472 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 337.16 333.28 8412900000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2296400000 2993800000 3122700000 0 0 0 0 0 0 17600 36 17055 327304;327305;327306;327307;327308;327309;327310;327311;327312;327313;327314 199823;199824;199825;199826;199827;199828;199829;199830;199831;199832 199828 10 RIEEITAEIEVGR Unmodified 1513.81 0.81002097 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 2 3 3 3 1 4 1 2 2 1 3 3 3 1 29.689 28.407 2;3 2.846E-06 13626 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.03 90.945 328740000 11311000 6287000 11705000 9153300 5407300 9313600 29525000 29261000 34183000 0 0 1978900 33158000 16049000 19110000 2711800 1614700 0 41894000 28959000 34732000 0 2383600 0 17601 107 17056 327315;327316;327317;327318;327319;327320;327321;327322;327323;327324;327325;327326;327327;327328;327329;327330;327331;327332;327333;327334;327335;327336;327337;327338;327339;327340;327341;327342;327343;327344;327345;327346;327347;327348;327349;327350;327351;327352;327353 199833;199834;199835;199836;199837;199838;199839;199840;199841;199842;199843;199844;199845;199846;199847 199833 7 RIEELTGVPIDIISTGPDR Unmodified 2080.1164 0.11643333 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 2 2 2 2 2 2 2 45.286 43.833 2;3 8.756E-68 21166 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 375.57 354.32 9143100000 835300000 839370000 715260000 1701300 0 0 769530000 692270000 639760000 0 0 0 706720000 660020000 589700000 0 0 0 913410000 955440000 824650000 0 0 0 17602 333 17057 327354;327355;327356;327357;327358;327359;327360;327361;327362;327363;327364;327365;327366;327367;327368;327369;327370;327371;327372;327373;327374;327375;327376;327377;327378;327379;327380;327381;327382;327383 199848;199849;199850;199851;199852;199853;199854;199855;199856;199857;199858;199859;199860;199861;199862;199863;199864;199865;199866;199867;199868;199869;199870;199871;199872;199873 199860 24 RIEETQK Unmodified 902.48214 0.48214489 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.1452 7.7553 2 0.0004906 1864 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 155.38 91.812 5877500000 367050000 385590000 336590000 2728500 3639100 3588700 519980000 503620000 527590000 260340000 253660000 202360000 241320000 231210000 248900000 119810000 89020000 98843000 386010000 400900000 412800000 102510000 96523000 82919000 17603 416 17058 327384;327385;327386;327387;327388;327389;327390;327391;327392;327393;327394;327395;327396;327397;327398;327399;327400;327401;327402;327403;327404;327405;327406;327407;327408 199874;199875;199876;199877;199878;199879;199880;199881;199882;199883;199884;199885;199886;199887;199888;199889 199875 16 RIEETQKEK Unmodified 1159.6197 0.619701 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 8.3743 8.7656 2;3 4.2987E-05 1705 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 137.05 107.98 914240000 0 0 0 16154000 16310000 16692000 0 951930 0 154840000 126030000 129800000 0 0 0 77019000 113460000 82155000 0 0 0 57638000 55374000 67813000 17604 416 17059 327409;327410;327411;327412;327413;327414;327415;327416;327417;327418;327419;327420;327421;327422;327423;327424;327425;327426;327427;327428;327429;327430;327431;327432;327433 199890;199891;199892;199893;199894;199895;199896;199897;199898;199899;199900;199901;199902;199903;199904;199905;199906;199907;199908;199909;199910;199911;199912;199913 199897 24 RIEEVLTLALQNEPSGMQVVTAK Unmodified 2525.3523 0.35232328 536 P0A9M0 lon Lon protease yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.877 46.644 3 0.00016624 18943 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 74.222 62.59 164970000 7431700 7307000 6350600 0 0 0 12503000 8470600 9719200 4648700 4278100 6166900 7159800 6257300 4662200 31836000 22871000 22278000 0 0 0 0 0 3031000 17605 536 17060 327434;327435;327436;327437;327438;327439;327440;327441;327442;327443;327444;327445;327446;327447;327448;327449 199914;199915;199916;199917 199914 1 RIEQASAR Unmodified 929.50428 0.50427732 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.2319 7.8466 2 2.8114E-09 1872 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 215.42 150.16 1054400000 98398000 86051000 80663000 55766000 47603000 39643000 54165000 49700000 56785000 35797000 28712000 40257000 29754000 27243000 28524000 16258000 21227000 16173000 48497000 51788000 41114000 30477000 30461000 39317000 17606 956 17061 327450;327451;327452;327453;327454;327455;327456;327457;327458;327459;327460;327461;327462;327463;327464;327465;327466;327467;327468;327469;327470;327471;327472;327473 199918;199919;199920;199921;199922;199923;199924;199925;199926;199927;199928;199929;199930;199931;199932;199933;199934;199935;199936;199937;199938;199939 199922 22 RIETLFTNDLDHGPYISETLR Unmodified 2489.2551 0.25505207 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 2 2 2 3 2 3 4 4 4 3 2 3 4 3 4 3 4 3 4 4 5 41.008 39.392 2;3;4;5 4.6284E-89 14489 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 394.4 360.22 54032000000 266650000 283170000 231020000 24330000 25310000 28796000 166110000 153190000 167090000 2759600000 2705700000 2653000000 174070000 180270000 176850000 11761000000 9450700000 9576400000 294720000 296130000 288580000 4031600000 4172500000 4164500000 17607 463 17062 327474;327475;327476;327477;327478;327479;327480;327481;327482;327483;327484;327485;327486;327487;327488;327489;327490;327491;327492;327493;327494;327495;327496;327497;327498;327499;327500;327501;327502;327503;327504;327505;327506;327507;327508;327509;327510;327511;327512;327513;327514;327515;327516;327517;327518;327519;327520;327521;327522;327523;327524;327525;327526;327527;327528;327529;327530;327531;327532;327533;327534;327535;327536;327537;327538;327539;327540;327541;327542;327543;327544;327545;327546;327547;327548;327549;327550 199940;199941;199942;199943;199944;199945;199946;199947;199948;199949;199950;199951;199952;199953;199954;199955;199956;199957;199958;199959;199960;199961;199962;199963;199964;199965;199966;199967;199968;199969;199970;199971;199972;199973;199974;199975;199976;199977;199978;199979;199980;199981;199982;199983;199984;199985;199986;199987;199988;199989;199990;199991;199992;199993;199994;199995;199996;199997;199998;199999;200000;200001 199943 62 RIETLFTNDLDHGPYISETLRVDPTNDR Unmodified 3286.6218 0.62183285 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 2 3 5 2 3 4 4 41.485 40.097 3;4;5 8.0363E-31 14811 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 181.05 164.9 4030900000 0 0 0 2673900 2377800 2496500 0 0 0 94366000 126260000 91665000 0 0 0 853170000 899400000 862670000 0 0 0 402990000 322060000 370770000 17608 463 17063 327551;327552;327553;327554;327555;327556;327557;327558;327559;327560;327561;327562;327563;327564;327565;327566;327567;327568;327569;327570;327571;327572;327573;327574;327575;327576;327577;327578;327579;327580 200002;200003;200004;200005;200006;200007;200008;200009;200010;200011;200012;200013;200014;200015;200016;200017;200018;200019;200020;200021;200022;200023;200024;200025 200004 21 RIFCNVVDAPK Unmodified 1317.6863 0.68634078 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 20 20.458 2 0.0003139 7987 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.033 93.879 35345000 3466700 3539900 3474200 0 0 0 4524400 2544800 0 0 0 0 0 1954500 1991600 0 0 0 4796900 4364900 4687400 0 0 0 17609 843 17064 327581;327582;327583;327584;327585;327586;327587;327588;327589;327590 200026;200027;200028;200029;200030 200026 4 RIGHTVER Unmodified 966.53591 0.5359118 986 P0AG51 rpmD 50S ribosomal protein L30 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 5.1399 6.0502 2 0.0010339 1332 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.58 85.395 90720000 0 0 0 0 0 0 6204000 6984800 6570600 0 0 0 10305000 8620100 11513000 0 0 0 13205000 13084000 14233000 0 0 0 17610 986 17065 327591;327592;327593;327594;327595;327596;327597;327598;327599 200031;200032;200033;200034;200035;200036 200032 6 RIGYPVIIK Unmodified 1057.6648 0.6648007 1236 P24182 accC Biotin carboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 2 1 2 2 1 1 1 2 2 2 2 2 2 1 1 1 24.319 23.35 2;3 0.0040119 10324 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.626 65.732 449410000 23438000 19790000 15912000 1539500 2153100 1369900 45859000 45594000 31620000 722090 0 1193800 39519000 35375000 20276000 0 0 0 65921000 51380000 41976000 1857700 2034000 1883200 17611 1236 17066 327600;327601;327602;327603;327604;327605;327606;327607;327608;327609;327610;327611;327612;327613;327614;327615;327616;327617;327618;327619;327620;327621;327622;327623;327624;327625;327626;327627;327628;327629;327630;327631 200037;200038;200039;200040;200041;200042;200043;200044;200045;200046;200047;200048;200049;200050;200051;200052;200053 200040 15 RIILPVNDGR Unmodified 1151.6775 0.67749065 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 1 By MS/MS 1 20.772 21.123 3 0.071278 6211 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 38.402 28.031 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17612 1115 17067 327632 200054 200054 1 RIINEPTAAALAYGLDK Unmodified 1814.989 0.98904797 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 2 2 1 2 2 2 1 1 1 3 2 2 1 1 1 2 2 2 35.305 33.796 2;3 2.1553E-24 16052 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 246.5 233.52 927710000 44411000 37237000 33665000 15998000 3888100 15781000 131310000 108980000 37364000 87609000 75172000 79734000 19778000 23041000 19644000 13603000 9758200 11501000 34145000 27207000 38359000 17540000 19564000 22428000 17613 293 17068 327633;327634;327635;327636;327637;327638;327639;327640;327641;327642;327643;327644;327645;327646;327647;327648;327649;327650;327651;327652;327653;327654;327655;327656;327657;327658;327659;327660;327661;327662;327663;327664;327665;327666;327667;327668;327669;327670 200055;200056;200057;200058;200059;200060;200061;200062;200063;200064;200065;200066;200067;200068;200069;200070;200071;200072;200073;200074;200075;200076;200077;200078;200079;200080;200081;200082;200083;200084;200085;200086 200076 30 RIINEPTAAALAYGLDKGTGNR Unmodified 2300.2237 0.22369236 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 2 By MS/MS By matching 1 1 32.133 30.03 3 0.15874 10187 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 25.536 17.914 4135800 0 0 0 0 0 2789900 0 0 0 1346000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17614 293 17069 327671;327672 200087 200087 1 RILEAWR Unmodified 942.53993 0.53993454 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 19.253 19.647 2 0.079453 7522 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.59 22.352 134010000 12747000 12691000 0 0 0 0 22862000 16827000 18713000 0 0 0 16785000 15663000 15242000 1538100 0 943800 0 0 0 0 0 0 17615 674 17070 327673;327674;327675;327676;327677;327678;327679;327680;327681;327682 200088 200088 1 RILLSSMPGCAVTEVEIDGVLHEYSTK Oxidation (M) 3019.4995 0.4994578 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 6 4 2 3 3 43.764 42.631 3;4 5.5822E-11 14551 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 124.17 121.42 363090000 0 0 0 0 0 0 0 0 0 30284000 24727000 21031000 0 0 0 72794000 82231000 61188000 0 0 0 25444000 23003000 22387000 17616 383 17071 327683;327684;327685;327686;327687;327688;327689;327690;327691;327692;327693;327694;327695;327696;327697;327698;327699;327700;327701;327702;327703;327704;327705;327706;327707;327708;327709;327710;327711 200089;200090;200091;200092;200093;200094;200095;200096;200097;200098;200099;200100;200101;200102;200103;200104;200105;200106;200107;200108;200109;200110;200111;200112;200113;200114 200093 166 24 RILLSSMPGCAVTEVEIDGVLHEYSTK Unmodified 3003.5045 0.50454318 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 4 4 5 15 15 14 4 5 5 48.661 48.049 2;3;4 1.5879E-41 16638 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 260.34 226.04 14780000000 0 0 0 6172000 3649700 5293500 0 0 0 700370000 801400000 714960000 0 0 0 3142700000 3044200000 3293700000 0 0 0 985720000 975830000 1106100000 17617 383 17071 327712;327713;327714;327715;327716;327717;327718;327719;327720;327721;327722;327723;327724;327725;327726;327727;327728;327729;327730;327731;327732;327733;327734;327735;327736;327737;327738;327739;327740;327741;327742;327743;327744;327745;327746;327747;327748;327749;327750;327751;327752;327753;327754;327755;327756;327757;327758;327759;327760;327761;327762;327763;327764;327765;327766;327767;327768;327769;327770;327771;327772;327773;327774;327775;327776;327777;327778;327779;327780;327781;327782;327783;327784;327785;327786 200115;200116;200117;200118;200119;200120;200121;200122;200123;200124;200125;200126;200127;200128;200129;200130;200131;200132;200133;200134;200135;200136;200137;200138;200139;200140;200141;200142;200143;200144;200145;200146;200147;200148;200149;200150;200151;200152;200153;200154;200155;200156;200157;200158;200159;200160;200161;200162;200163;200164;200165;200166;200167;200168;200169;200170;200171;200172;200173;200174;200175;200176;200177;200178;200179;200180;200181;200182;200183;200184;200185;200186;200187;200188;200189;200190 200161 76 RIPEDASTLHR Unmodified 1293.6789 0.67894722 101 P04993 recD RecBCD enzyme subunit RecD yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 12.023 12.904 2 0.05537 3593 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 47.96 28.173 81638000 0 0 0 0 0 0 21689000 22909000 23044000 0 0 0 5037800 5437400 3521000 0 0 0 0 0 0 0 0 0 17618 101 17072 327787;327788;327789;327790;327791;327792 200191 200191 1 RIPIFAICR Unmodified 1144.6539 0.65391844 1810 P76038 puuD Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 31.286 30.148 3 0.00035643 14047 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.639 84.85 13017000 5747000 3890800 3378800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17619 1810 17073 327793;327794;327795 200192 200192 1 RIPIVGDEHADMEK Unmodified 1608.793 0.7929907 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 3 2 1 1 1 3 2 2 3 2 3 1 19.057 19.526 2;3 1.3043E-10 7532 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.58 143.89 1298800000 109750000 124160000 104580000 0 0 0 113370000 104930000 102520000 2144600 4331700 3994900 91365000 89847000 82996000 0 0 0 132480000 121070000 110390000 874130 0 0 17620 158 17074 327796;327797;327798;327799;327800;327801;327802;327803;327804;327805;327806;327807;327808;327809;327810;327811;327812;327813;327814;327815;327816;327817;327818;327819;327820;327821;327822;327823;327824;327825;327826;327827;327828 200193;200194;200195;200196;200197;200198;200199;200200;200201;200202;200203;200204;200205;200206;200207;200208;200209;200210;200211;200212;200213;200214;200215;200216 200200 23 RIPSSGDLSESDDWSEEPKQ Unmodified 2261.0084 0.0083990195 431 P0A8H8 yacG DNA gyrase inhibitor YacG yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 1 1 2 2 2 26.266 25.235 2;3 1.9237E-15 11282 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.86 155.8 310910000 32502000 36516000 34046000 0 0 0 19960000 17735000 19830000 0 0 0 24565000 18938000 18551000 0 0 0 32355000 29513000 26398000 0 0 0 17621 431 17075 327829;327830;327831;327832;327833;327834;327835;327836;327837;327838;327839;327840;327841;327842;327843;327844;327845;327846;327847 200217;200218;200219;200220;200221;200222;200223;200224;200225;200226 200221 10 RIQGMEK Unmodified 860.45382 0.45382165 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 9.9911 10.818 2 0.029003 2166 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 73.975 50.451 1978600000 395610000 0 297080000 0 0 0 31718000 24251000 25025000 0 0 0 177230000 152740000 129880000 0 0 0 252490000 214980000 277540000 0 0 0 17622 1444 17076 327848;327849;327850;327851;327852;327853;327854;327855;327856;327857;327858;327859 200227;200228;200229;200230;200231 200227 5 RIQNAGTEVVEAK Unmodified 1413.7576 0.75759147 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.372 13.226 2 1.428E-23 3900 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 226.4 179.94 1471000000 288560000 179980000 220930000 0 0 1084800 103440000 110870000 100040000 0 0 0 56341000 51599000 41417000 0 0 0 104540000 114540000 97699000 0 0 0 17623 1642 17077 327860;327861;327862;327863;327864;327865;327866;327867;327868;327869;327870;327871;327872 200232;200233;200234;200235;200236;200237;200238;200239 200236 8 RIQPGDK Unmodified 812.45045 0.45045083 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 10.413 10.672 2 0.0014239 1844 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 135.6 100.49 9396500000 74606000 63556000 68108000 0 0 0 0 0 0 611750000 520160000 568340000 0 0 0 2976400000 2494500000 2019000000 0 0 0 0 0 0 17624 463 17078 327873;327874;327875;327876;327877;327878;327879;327880;327881 200240;200241;200242;200243;200244 200244 5 RISALGPGGLTR Unmodified 1196.699 0.69895438 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 4 4 4 1 3 4 3 1 1 4 4 4 19.281 19.309 2;3 4.7035E-08 5548 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 160.67 126.59 5196600000 0 0 1110200 2428300 1815000 0 0 0 0 379910000 330010000 339810000 0 2760200 0 1101500000 822310000 809950000 4609600 0 4400900 464470000 469100000 462430000 17625 463 17079 327882;327883;327884;327885;327886;327887;327888;327889;327890;327891;327892;327893;327894;327895;327896;327897;327898;327899;327900;327901;327902;327903;327904;327905;327906;327907;327908;327909;327910;327911;327912;327913;327914;327915;327916;327917;327918;327919;327920;327921;327922 200245;200246;200247;200248;200249;200250;200251;200252;200253;200254;200255;200256;200257;200258;200259;200260;200261;200262;200263;200264;200265;200266;200267;200268;200269 200251 25 RISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIK Unmodified 4222.1394 0.1393602 847 P0AED0 uspA Universal stress protein A yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 51.818 50.521 4;5 1.3868E-59 24952 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 233.11 232.71 918210000 83113000 97599000 71053000 11380000 10750000 7190900 120530000 109210000 95301000 12967000 5745200 11675000 44729000 49808000 41227000 0 0 0 50772000 48872000 46281000 0 0 0 17626 847 17080 327923;327924;327925;327926;327927;327928;327929;327930;327931;327932;327933;327934;327935;327936;327937;327938;327939;327940;327941;327942;327943;327944;327945;327946;327947;327948;327949;327950;327951;327952;327953;327954;327955;327956;327957 200270;200271;200272;200273;200274;200275;200276;200277 200271 8 RISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKK Unmodified 4350.2343 0.23432322 847 P0AED0 uspA Universal stress protein A yes yes 0 0 2 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 49.845 48.364 5 0.04016 17259 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 36.704 35.499 23197000 0 0 0 3349200 3858700 3252700 0 0 0 6159700 6576700 0 0 0 0 0 0 0 0 0 0 0 0 0 17627 847 17081 327958;327959;327960;327961;327962 200278 200278 1 RISNEESISAMFEH Unmodified 1648.7515 0.75151981 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 31.929 30.692 2 8.9458E-45 14388 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 275.57 274.58 241760000 25762000 22898000 20013000 0 0 0 12816000 14154000 16002000 0 0 0 22626000 17792000 18637000 1154500 0 0 27717000 22362000 19826000 0 0 0 17628 300 17082 327963;327964;327965;327966;327967;327968;327969;327970;327971;327972;327973;327974;327975 200279;200280;200281;200282;200283;200284;200285;200286;200287;200288;200289;200290 200284 12 RISTVPEAVEMQSR Unmodified 1601.8195 0.8195398 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 21.279 21.328 3 5.6244E-06 8587 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 87.566 76.621 55064000 0 0 0 0 0 0 0 0 0 0 0 767280 0 0 4557300 0 0 0 11196000 13797000 15148000 3004100 3195600 3398000 17629 937 17083 327976;327977;327978;327979;327980;327981;327982;327983 200291 200291 1 RITGTPFEALVR Unmodified 1358.767 0.76703394 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 32.574 31.054 3 0.15772 10715 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 21.06 19.813 6722100 0 0 0 2562100 1942100 2217900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17630 335 17084 327984;327985;327986 200292 200292 1 RIVEEELQR Unmodified 1170.6357 0.63568542 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 1 2 2 13.38 14.266 2;3 1.7554E-05 4175 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 161.27 124.71 248750000 9661300 7264000 7170400 0 0 0 32089000 35936000 33393000 0 0 0 18719000 16952000 13083000 0 0 0 21860000 28716000 23904000 0 0 0 17631 218 17085 327987;327988;327989;327990;327991;327992;327993;327994;327995;327996;327997;327998;327999;328000;328001;328002;328003;328004;328005 200293;200294;200295;200296;200297;200298;200299;200300;200301;200302;200303 200302 9 RIVLPEGDEPR Unmodified 1279.6884 0.68844927 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 18.691 19.125 2;3 0.00025336 7219 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.22 81.15 360470000 42205000 18062000 17266000 0 0 0 34642000 27693000 30014000 3078300 3159800 2453800 33632000 27999000 25859000 0 0 0 29074000 33232000 32101000 0 0 0 17632 539 17086 328006;328007;328008;328009;328010;328011;328012;328013;328014;328015;328016;328017;328018;328019;328020;328021;328022;328023;328024;328025;328026;328027;328028;328029;328030;328031;328032;328033;328034 200304;200305;200306;200307;200308;200309 200307 4 RIYEAAR Unmodified 877.477 0.47699993 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.592 11.408 2 0.13649 2681 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 52.268 29.232 166290000 5386100 7562500 6417900 0 0 0 26561000 21140000 16045000 0 0 0 13278000 14418000 16142000 0 0 0 15043000 12428000 11865000 0 0 0 17633 1959 17087 328035;328036;328037;328038;328039;328040;328041;328042;328043;328044;328045;328046 200310 200310 1 RIYGVLER Unmodified 1004.5767 0.57671398 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.04 17.601 2 0.0001472 6256 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 157.68 107.55 1454900000 161460000 191260000 165900000 6284800 5292700 4281800 72728000 65475000 72785000 28438000 24320000 20904000 71867000 71815000 73244000 0 0 0 126890000 128940000 126710000 13762000 10605000 11980000 17634 375 17088 328047;328048;328049;328050;328051;328052;328053;328054;328055;328056;328057;328058;328059;328060;328061;328062;328063;328064;328065;328066;328067 200311;200312;200313;200314;200315;200316;200317;200318;200319;200320;200321;200322;200323;200324;200325;200326;200327;200328 200320 18 RIYNEISK Unmodified 1021.5556 0.55564418 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.83 12.695 2 0.0017784 3518 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 109.01 82.05 99355000 14214000 0 0 0 0 0 9569800 0 13160000 0 0 0 10329000 7085200 6562000 0 0 0 13600000 14607000 10227000 0 0 0 17635 451 17089 328068;328069;328070;328071;328072;328073;328074;328075;328076 200329;200330;200331;200332;200333;200334 200330 6 RKAEEHISSSHGDVDYAQASAELAK Unmodified 2698.2947 0.29468506 236 P0A6E6 atpC ATP synthase epsilon chain yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 3 3 3 3 3 3 1 1 3 2 3 15.532 15.93 3;4;5 1.4186E-06 4545 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 90.468 87.471 187760000 0 0 0 11155000 15491000 13140000 0 0 0 37303000 20525000 21067000 0 0 0 0 6370100 8670800 0 0 0 23852000 12468000 17721000 17636 236 17090 328077;328078;328079;328080;328081;328082;328083;328084;328085;328086;328087;328088;328089;328090;328091;328092;328093;328094;328095;328096;328097;328098;328099;328100;328101;328102;328103;328104 200335;200336;200337;200338;200339;200340;200341;200342;200343;200344 200336 10 RKDELPK Unmodified 884.50797 0.50796571 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.3695 8.9311 2 0.032547 1845 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 89.369 65.397 416230000 107800000 46476000 61709000 0 0 0 0 0 0 28410000 20908000 20668000 12891000 9558500 21339000 10095000 0 8505200 17160000 17275000 21529000 0 11900000 0 17637 377 17091 328105;328106;328107;328108;328109;328110;328111;328112;328113;328114;328115;328116;328117;328118;328119 200345;200346;200347;200348;200349;200350;200351;200352 200348 8 RKEFIEAAQVGGVSTSGIVIR Unmodified 2216.2277 0.22771511 942 P0AFH6 oppC Oligopeptide transport system permease protein OppC yes yes 0 0 2 By MS/MS By matching By MS/MS 1 1 1 31.959 30.44 4 0.09992 10352 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 28.891 28.482 7346700 0 0 0 2644000 1896800 2805900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17638 942 17092 328120;328121;328122 200353;200354 200354 2 RKEGAER Unmodified 844.45151 0.45151346 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 8.1421 8.3121 2 0.061599 1297 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 82.241 56.414 15470000 0 0 0 0 0 0 0 0 0 2627900 2655800 2338400 0 0 0 2491600 4293200 0 0 0 0 0 0 1063200 17639 1576 17093 328123;328124;328125;328126;328127;328128 200355;200356;200357;200358;200359 200358 5 RKITQGDDLAPGVLK Unmodified 1609.9152 0.91515474 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 3 3 3 2 3 18.159 18.208 2;3;4 8.1896E-07 5364 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 113.65 111.18 1193100000 0 0 0 0 908550 0 0 0 0 39761000 45898000 39667000 0 0 0 247100000 206920000 277900000 0 0 0 140020000 91376000 103500000 17640 463 17094 328129;328130;328131;328132;328133;328134;328135;328136;328137;328138;328139;328140;328141;328142;328143;328144;328145;328146;328147;328148;328149;328150;328151 200360;200361;200362;200363;200364;200365;200366;200367;200368;200369;200370;200371;200372;200373;200374;200375;200376;200377;200378;200379 200372 20 RKLDELDLIVVDHPQVK Unmodified 2016.1368 0.13677484 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.72 29.279 4 0.0058513 14173 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 48.883 47.983 206340000 8732200 8389800 14543000 0 771500 0 28555000 29371000 28287000 0 1231600 0 13577000 13326000 6137100 0 0 0 13902000 19831000 19683000 0 0 0 17641 1510 17095 328152;328153;328154;328155;328156;328157;328158;328159;328160;328161;328162;328163;328164;328165 200380;200381 200380 2 RKLEEEAR Unmodified 1029.5567 0.55670682 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 2 By MS/MS 1 10.681 10.681 2 0.0023993 1937 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 95.358 44.655 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17642 297 17096 328166 200382 200382 1 RKLPATIILR Unmodified 1179.7816 0.7815618 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 4 5 5 3 4 3 18.95 19.02 2;3 4.5767E-13 5356 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 230.24 155.05 15145000000 0 0 0 12110000 16160000 11734000 0 0 0 1108700000 1026600000 945400000 0 0 0 2764700000 2711500000 3291300000 0 0 0 1221800000 907910000 1127500000 17643 463 17097 328167;328168;328169;328170;328171;328172;328173;328174;328175;328176;328177;328178;328179;328180;328181;328182;328183;328184;328185;328186;328187;328188;328189;328190;328191;328192;328193;328194;328195;328196;328197;328198;328199;328200;328201;328202;328203 200383;200384;200385;200386;200387;200388;200389;200390;200391;200392;200393;200394;200395;200396;200397;200398;200399;200400;200401;200402;200403;200404;200405;200406;200407;200408;200409;200410;200411;200412;200413;200414 200385 32 RKNWQEVE Unmodified 1087.5411 0.54105675 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.288 12.763 2 0.042458 2975 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 78.616 53.984 44116000 0 0 0 1961300 3246000 2424000 0 0 0 8515400 8659300 9514700 0 0 0 0 809660 0 0 0 0 3149500 2967900 2867900 17644 122 17098 328204;328205;328206;328207;328208;328209;328210;328211;328212;328213 200415;200416 200416 2 RKPESIFDYR Unmodified 1309.6779 0.67788459 407 P0A884 thyA Thymidylate synthase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 18.469 19.074 2;3 0.0001467 7082 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 98.754 81.387 505910000 45306000 44948000 35863000 0 0 0 34815000 28545000 32145000 0 0 0 43134000 34464000 28799000 0 0 0 65460000 52197000 60236000 0 0 0 17645 407 17099 328214;328215;328216;328217;328218;328219;328220;328221;328222;328223;328224;328225;328226;328227;328228;328229;328230;328231;328232;328233;328234;328235;328236;328237 200417;200418;200419;200420;200421;200422;200423;200424;200425;200426;200427;200428;200429;200430;200431;200432;200433;200434;200435 200424 17 RKPTMLVTDLTLR Unmodified 1542.8916 0.89158253 1086 P13029 katG Catalase-peroxidase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 3 3 3 2 2 2 2 1 2 2 27.198 26.025 2;3;4 5.82E-06 11166 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 134.18 78.461 1885400000 197010000 269060000 224870000 0 0 0 232570000 229580000 193730000 0 0 0 104300000 97711000 100750000 0 0 0 17008000 116760000 102090000 0 0 0 17646 1086 17100 328238;328239;328240;328241;328242;328243;328244;328245;328246;328247;328248;328249;328250;328251;328252;328253;328254;328255;328256;328257;328258;328259;328260;328261;328262;328263 200436;200437;200438;200439;200440;200441;200442;200443 200443 7 RKPTMLVTDLTLR Oxidation (M) 1558.8865 0.88649715 1086 P13029 katG Catalase-peroxidase yes yes 0 1 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.135 26.023 3 0.0097954 11758 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 54.276 34.698 67734000 0 12708000 11663000 0 0 0 0 9769900 9013600 0 0 0 7228200 3814100 5211100 0 0 0 3478000 0 4847700 0 0 0 17647 1086 17100 328264;328265;328266;328267;328268;328269;328270;328271;328272 200444;200445;200446 200446 483 3 RLAAGIDLGTTNSLVATVR Unmodified 1927.0851 0.085073619 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 38.642 36.804 3 0.0041575 14332 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 44.089 40.111 11579000 0 0 0 466100 663880 1000300 0 0 0 3030600 2232800 0 0 0 0 0 0 710530 0 0 0 1344600 1020200 1110000 17648 294 17101 328273;328274;328275;328276;328277;328278;328279;328280;328281 200447 200447 0 RLAGETLSEHEVAQFK Unmodified 1813.9323 0.93226137 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.016 21.348 3 1.7258E-10 8891 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.3 142.05 223140000 32253000 30402000 28485000 0 0 0 24076000 22292000 26731000 0 0 0 10053000 11723000 12363000 0 0 0 10031000 6775000 7952200 0 0 0 17649 427 17102 328282;328283;328284;328285;328286;328287;328288;328289;328290;328291;328292;328293 200448;200449;200450;200451;200452;200453;200454;200455;200456 200448 9 RLASYEK Unmodified 865.46577 0.46576654 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.688 11.246 2 0.0021848 2241 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 124.59 67.492 249780000 0 0 0 6164100 5528800 7835000 11370000 9211300 10361000 22745000 22852000 23513000 13203000 7465900 9580800 6177900 10047000 4975000 18028000 0 11334000 17821000 14098000 17469000 17650 1426 17103 328294;328295;328296;328297;328298;328299;328300;328301;328302;328303;328304;328305;328306;328307;328308;328309;328310;328311;328312;328313 200457;200458;200459;200460;200461;200462 200458 6 RLDDVYGDR Unmodified 1107.5309 0.530886 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.514 14.963 2 1.0128E-05 4008 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 169.41 140.89 1394700000 0 0 0 0 7631400 8509300 276960000 264070000 241850000 10271000 12097000 11305000 0 0 190070000 4219600 2992700 3162300 329660000 0 0 9915900 10931000 11058000 17651 1409 17104 328314;328315;328316;328317;328318;328319;328320;328321;328322;328323;328324;328325;328326;328327;328328;328329 200463;200464;200465;200466;200467;200468;200469;200470;200471;200472;200473;200474;200475 200464 13 RLDEVYALYADPDADFDK Unmodified 2114.9797 0.97966507 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.612 42.097 2;3 9.335E-29 20664 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 245.39 203.35 985920000 101560000 77214000 78451000 0 0 0 72254000 80912000 77666000 0 0 0 71748000 54307000 54818000 0 0 0 109160000 106850000 100970000 0 0 0 17652 561 17105 328330;328331;328332;328333;328334;328335;328336;328337;328338;328339;328340;328341;328342;328343;328344;328345;328346;328347;328348;328349;328350;328351;328352;328353 200476;200477;200478;200479;200480;200481;200482;200483;200484;200485;200486;200487;200488;200489;200490;200491;200492;200493;200494;200495 200488 17 RLDEVYALYADPDADFDKLAAEQGR Unmodified 2840.3617 0.36170199 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 2 1 2 2 2 2 2 2 46.215 44.682 3;4 7.5176E-22 21692 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 158.94 158.64 603110000 30673000 78630000 46206000 0 0 1177900 37372000 49321000 43702000 3561200 0 0 14649000 38594000 34481000 0 0 0 74878000 79442000 70422000 0 0 0 17653 561 17106 328354;328355;328356;328357;328358;328359;328360;328361;328362;328363;328364;328365;328366;328367;328368;328369;328370;328371;328372;328373;328374;328375;328376 200496;200497;200498;200499;200500;200501;200502;200503;200504;200505;200506;200507 200503 10 RLDFGGCR Unmodified 979.46578 0.46578332 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 14.269 15.027 2 2.4821E-06 4848 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 188.98 173.54 103840000 37889000 35690000 29059000 0 0 0 0 0 1205000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17654 1632 17107 328377;328378;328379;328380 200508;200509;200510 200508 3 RLDFMMQEFNR Unmodified 1485.6857 0.68568885 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 37.581 35.895 2;3 5.8292E-16 16561 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 194.17 176.93 680780000 63820000 55853000 56680000 405440 300070 290370 61925000 78163000 61851000 0 0 0 41538000 41129000 23106000 0 0 0 65052000 60911000 69752000 0 0 0 17655 1215 17108 328381;328382;328383;328384;328385;328386;328387;328388;328389;328390;328391;328392;328393;328394;328395;328396;328397;328398;328399;328400;328401;328402;328403;328404;328405;328406;328407 200511;200512;200513;200514;200515;200516;200517;200518;200519;200520;200521;200522;200523;200524;200525;200526;200527;200528;200529;200530;200531;200532 200532 22 RLDHFAAHGCK Unmodified 1310.6302 0.63022289 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 10.468 11.266 2 3.9435E-07 2604 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 157.75 147.46 82672000 12954000 13852000 7950500 0 0 0 10853000 11529000 9135700 0 0 0 5034600 6625900 4736900 0 0 0 0 0 0 0 0 0 17656 427 17109 328408;328409;328410;328411;328412;328413;328414;328415;328416;328417 200533;200534;200535;200536;200537;200538;200539 200533 7 RLDIDELTVCHYLQNIR Unmodified 2157.1001 0.10007176 1656 P63201 gadW HTH-type transcriptional regulator GadW yes yes 0 0 1 By matching By MS/MS 1 1 42.008 42.192 4 0.002742 15015 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 58.159 45.445 17624000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7607900 10017000 0 0 0 0 0 0 17657 1656 17110 328418;328419 200540 200540 1 RLDITESTVK Unmodified 1160.6401 0.6401021 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.829 16.502 2 1.2119E-07 5764 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 179.42 160.44 2712200000 392250000 424460000 384430000 10596000 9366400 9012800 268650000 274680000 260670000 11334000 10834000 15465000 106210000 83541000 75882000 0 0 0 123120000 126520000 113980000 4230400 3928800 3013100 17658 908 17111 328420;328421;328422;328423;328424;328425;328426;328427;328428;328429;328430;328431;328432;328433;328434;328435;328436;328437;328438;328439;328440;328441;328442;328443 200541;200542;200543;200544;200545;200546;200547;200548;200549;200550;200551;200552;200553;200554 200549 14 RLDMLNEELSDKER Unmodified 1746.857 0.85704752 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 1 1 1 23.383 22.587 2;3 7.3036E-20 9658 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 178.23 172.33 1306700000 168080000 177020000 166710000 2052300 2988200 2352400 128140000 132030000 122140000 6099100 7025700 6127800 68596000 57889000 61913000 0 0 0 49328000 72957000 72112000 0 1688900 1419400 17659 1662 17112 328444;328445;328446;328447;328448;328449;328450;328451;328452;328453;328454;328455;328456;328457;328458;328459;328460;328461;328462;328463;328464;328465;328466;328467;328468;328469;328470;328471;328472;328473 200555;200556;200557;200558;200559;200560;200561;200562;200563;200564;200565;200566;200567;200568 200561 14 RLDMLNEELSDKER Oxidation (M) 1762.852 0.85196214 1662 P63284 clpB Chaperone protein ClpB yes yes 0 1 2 By MS/MS 1 23.065 22.59 3 0.032315 9395 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 41.695 39.697 3567000 0 0 0 0 0 0 0 0 0 0 0 0 3567000 0 0 0 0 0 0 0 0 0 0 0 17660 1662 17112 328474 200569 200569 587 0 RLDTLCELNVMEQVYNLGHSTIMQSAWK Unmodified 3335.6101 0.61008766 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 54.357 52.916 4 3.7147E-16 25937 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.17 144.19 518080000 89575000 81189000 81653000 0 0 0 32190000 31147000 0 0 0 0 43073000 0 39916000 0 0 0 0 54560000 64778000 0 0 0 17661 1639 17113 328475;328476;328477;328478;328479;328480;328481;328482;328483 200570;200571;200572;200573;200574;200575 200574 6 RLDYQGIYTPDQVER Unmodified 1851.9115 0.91152593 625 P0AB28 yceD Uncharacterized protein YceD yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 29.041 27.738 2 3.177E-09 12727 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 185.95 161.09 32351000 6482300 0 8344800 0 0 0 2400700 0 2642800 0 0 0 2797300 0 0 0 0 0 4064500 5619000 0 0 0 0 17662 625 17114 328484;328485;328486;328487;328488;328489;328490 200576 200576 1 RLEADKDFYVCSLSNLVNIYK Unmodified 2546.2839 0.28390936 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 2 2 1 2 2 2 49.13 47.76 3;4 2.5836E-15 23301 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146.89 140.39 358990000 66294000 53564000 54673000 1159000 0 0 36215000 29736000 28715000 0 0 0 15174000 12254000 6195900 0 0 0 15781000 21826000 17401000 0 0 0 17663 218 17115 328491;328492;328493;328494;328495;328496;328497;328498;328499;328500;328501;328502;328503;328504;328505;328506;328507;328508;328509;328510;328511;328512;328513;328514 200577;200578;200579;200580;200581;200582;200583;200584;200585 200583 9 RLEAFVR Unmodified 889.51339 0.51338544 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 15.393 16.205 2 0.0027302 5611 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 116.88 81.992 271320000 22926000 21095000 0 0 0 0 36114000 28933000 33835000 0 0 0 22347000 19788000 14702000 0 0 0 21971000 25456000 24155000 0 0 0 17664 801 17116 328515;328516;328517;328518;328519;328520;328521;328522;328523;328524;328525 200586;200587;200588;200589;200590;200591;200592;200593 200587 8 RLEARPTADLCIDCK Unmodified 1816.8924 0.89238717 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 2 2 2 1 1 19.29 19.244 3;4 1.7507E-11 5660 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 132.44 120.42 64693000 0 0 0 0 1896400 0 0 0 0 9050700 5537300 5149500 0 0 0 15734000 12784000 12484000 0 0 0 1004400 0 1052000 17665 674 17117 328526;328527;328528;328529;328530;328531;328532;328533;328534;328535;328536;328537;328538 200594;200595;200596;200597 200594 4 RLEDNLPR Unmodified 1011.5461 0.54614213 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.497 15.131 2 3.6127E-06 4947 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 182.53 137.84 819970000 54049000 57952000 62990000 1680000 1128700 1453300 68692000 68761000 75504000 3109500 4620000 4286100 55788000 50712000 51723000 0 0 0 80916000 73471000 96088000 2412400 2356300 2272300 17666 62 17118 328539;328540;328541;328542;328543;328544;328545;328546;328547;328548;328549;328550;328551;328552;328553;328554;328555;328556;328557;328558;328559 200598;200599;200600;200601;200602;200603;200604;200605;200606;200607;200608 200599 11 RLEDQQR Unmodified 943.48354 0.48354187 851 P0AEE1 dcrB Protein DcrB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 6.9319 7.614 2 8.413E-06 1848 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 191.63 97.463 396900000 0 0 0 8305800 4726400 4344400 0 0 0 46837000 45691000 34406000 40382000 34382000 30694000 0 0 0 53705000 57685000 0 16944000 0 18793000 17667 851 17119 328560;328561;328562;328563;328564;328565;328566;328567;328568;328569;328570;328571;328572 200609;200610;200611;200612;200613;200614 200611 6 RLEEAGFAFR Unmodified 1194.6146 0.61455605 1941 P77775 yfcH Epimerase family protein YfcH yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 2 2 2 1 1 1 1 1 1 25.209 24.155 2;3 0.00068062 9140 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 109.66 90.569 71687000 14362000 8252300 9217200 5947700 2339800 6994600 0 0 6018100 5685000 0 3817200 0 1757700 0 0 0 446860 6848300 0 0 0 0 0 17668 1941 17120 328573;328574;328575;328576;328577;328578;328579;328580;328581;328582;328583;328584;328585;328586;328587 200615;200616;200617;200618;200619 200615 4 RLEEGLEDGLAHQTLLGVTGSGK Unmodified 2379.2394 0.23940201 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.759 34.202 3 1.4694E-28 16507 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.15 182.02 196330000 30305000 26792000 25829000 0 0 0 19780000 18750000 16248000 0 0 0 10914000 8212500 8327700 0 0 0 10983000 9705700 10486000 0 0 0 17669 426 17121 328588;328589;328590;328591;328592;328593;328594;328595;328596;328597;328598;328599 200620;200621;200622;200623;200624;200625 200622 5 RLEEGLVELR Unmodified 1212.6826 0.68263561 668 P0ABN5 dcuA Anaerobic C4-dicarboxylate transporter DcuA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 25.054 24.053 2 9.502E-07 10229 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 172.27 111.59 260800000 0 4708000 3819400 0 0 0 29245000 33908000 30742000 0 0 0 35835000 27277000 28717000 0 0 0 23739000 18754000 24060000 0 0 0 17670 668 17122 328600;328601;328602;328603;328604;328605;328606;328607;328608;328609;328610 200626 200626 1 RLEEGLVELRGEK Unmodified 1526.8417 0.84165545 668 P0ABN5 dcuA Anaerobic C4-dicarboxylate transporter DcuA yes yes 0 0 2 By MS/MS By matching By MS/MS 1 1 1 20.315 19.969 3 0.0006384 6476 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 67.234 35.353 13545000 0 0 0 0 0 0 0 0 0 5632200 3963200 3949600 0 0 0 0 0 0 0 0 0 0 0 0 17671 668 17123 328611;328612;328613 200627;200628 200627 1 RLEGVEMPLVTLTAAEALAR Unmodified 2139.1722 0.17217407 817 P0ADX5 yhfG Uncharacterized protein YhfG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 1 1 52.906 51.529 2;3 1.8726E-10 25275 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.83 140.1 320630000 44710000 60734000 50889000 0 0 0 37255000 43779000 32481000 0 0 0 6276500 5890000 4598400 0 0 0 11469000 11811000 10735000 0 0 0 17672 817 17124 328614;328615;328616;328617;328618;328619;328620;328621;328622;328623;328624;328625;328626;328627;328628;328629;328630;328631 200629;200630;200631;200632;200633 200632 4 RLEILTR Unmodified 899.55525 0.55525025 637 P0AB83 nth Endonuclease III yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 17.39 17.958 2 0.00023841 5208 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 166.68 115.71 90688000 0 5286900 4166900 0 0 0 0 0 0 0 0 0 4907500 5758100 5375000 21049000 13149000 13838000 6273800 5085300 5798600 0 0 0 17673 637 17125 328632;328633;328634;328635;328636;328637;328638;328639;328640;328641;328642 200634;200635;200636 200634 3 RLELVAEVGEVK Unmodified 1340.7664 0.76636524 153 P07023 tyrA T-protein;Chorismate mutase;Prephenate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.917 27.656 3 0.00045456 12854 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 67.275 59.364 78079000 5626500 6240100 5672000 0 0 0 7734300 7401400 6508300 594450 0 0 4119600 6507900 4759200 0 0 425690 8210900 7122200 7156900 0 0 0 17674 153 17126 328643;328644;328645;328646;328647;328648;328649;328650;328651;328652;328653;328654;328655;328656 200637;200638;200639;200640;200641 200637 3 RLENGDDYFAVNPK Unmodified 1636.7845 0.7845345 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 1 2 2 2 2 2 2 2 24.143 23.213 2;3 9.675E-11 10107 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 174.42 167.53 317880000 44585000 32422000 38874000 341630 334260 375360 31100000 40504000 31597000 0 0 0 18011000 10585000 13608000 0 0 0 14686000 15476000 11055000 4730600 5315800 4278900 17675 510 17127 328657;328658;328659;328660;328661;328662;328663;328664;328665;328666;328667;328668;328669;328670;328671;328672;328673;328674;328675;328676;328677;328678;328679;328680;328681;328682;328683;328684;328685;328686;328687;328688 200642;200643;200644;200645;200646;200647;200648;200649;200650;200651;200652;200653;200654;200655;200656;200657;200658 200654 12 RLENQLSPATDVAVVPHSSAAK Unmodified 2289.2077 0.20770795 750 P0ACV4 lapA Lipopolysaccharide assembly protein A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 23.326 22.585 3 1.3775E-10 9342 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.98 128.29 99961000 3246400 0 4346500 0 0 0 12254000 12739000 8199200 0 0 0 9729500 7311000 10028000 0 0 0 10836000 11665000 9608000 0 0 0 17676 750 17128 328689;328690;328691;328692;328693;328694;328695;328696;328697;328698;328699 200659;200660;200661;200662;200663;200664 200663 6 RLENQLSPATDVAVVPHSSAAKE Unmodified 2418.2503 0.25030105 750 P0ACV4 lapA Lipopolysaccharide assembly protein A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 1 2 2 2 2 2 2 24.189 23.172 3;4 0.00016208 8344 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 78.236 77.051 170030000 0 0 0 5933300 5107800 5391600 6334800 13066000 6185600 12202000 13594000 11241000 6105300 10598000 11978000 0 0 1590800 13168000 17522000 11602000 5920500 6407000 6082600 17677 750 17129 328700;328701;328702;328703;328704;328705;328706;328707;328708;328709;328710;328711;328712;328713;328714;328715;328716;328717;328718;328719;328720;328721;328722;328723;328724;328725;328726;328727;328728;328729;328730;328731;328732 200665;200666;200667;200668;200669;200670;200671;200672;200673;200674;200675;200676;200677;200678 200668 14 RLESGYLYLGSPVK Unmodified 1580.8562 0.85624288 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 31.37 30.014 2;3 0.010202 14039 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.157 50.204 377310000 33942000 30652000 27803000 0 0 0 38250000 38610000 42729000 0 0 0 23612000 27492000 25010000 0 0 0 30652000 31291000 27267000 0 0 0 17678 563 17130 328733;328734;328735;328736;328737;328738;328739;328740;328741;328742;328743;328744;328745;328746;328747;328748;328749;328750;328751;328752;328753;328754;328755;328756 200679;200680;200681;200682;200683 200681 5 RLEYSLVK Unmodified 1006.5811 0.58113065 1083 P13009 metH Methionine synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.206 18.673 2 0.049477 5205 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 61.999 43.269 83364000 4606500 7776200 6942700 1726600 1787400 1605700 6884800 7470600 7744700 3189100 3569700 2509300 3226600 3366000 3357400 0 0 0 6629800 5202300 5768700 0 0 0 17679 1083 17131 328757;328758;328759;328760;328761;328762;328763;328764;328765;328766;328767;328768;328769;328770;328771;328772;328773;328774 200684;200685;200686 200685 3 RLFVVDAFCGANPDTR Unmodified 1836.8941 0.89410173 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 2 2 1 1 1 2 1 1 1 38.355 36.958 3 5.87E-05 17965 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 81.346 77.244 112790000 19237000 22955000 22896000 0 0 0 0 3101600 0 0 0 0 7713100 7031800 9907600 0 0 518430 0 8922100 10507000 0 0 0 17680 1195 17132 328775;328776;328777;328778;328779;328780;328781;328782;328783;328784;328785;328786;328787 200687;200688;200689 200688 3 RLGIEEGIELNPPLFDLFLK Unmodified 2312.278 0.27801935 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.177 53.717 3 8.2948E-07 26768 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.94 86.912 315370000 71598000 71434000 67403000 0 0 3413700 16114000 6563600 10605000 0 0 0 11038000 7879700 11205000 0 0 0 14432000 12159000 11521000 0 0 0 17681 334 17133 328788;328789;328790;328791;328792;328793;328794;328795;328796;328797;328798;328799;328800 200690;200691;200692;200693;200694 200692 5 RLGLTGYAK Unmodified 977.56581 0.56581494 632 P0AB65 yccX Acylphosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 14.998 15.757 2 0.0046264 5348 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.684 43.125 49018000 5652600 6939800 7190100 248650 0 0 6913200 9524900 7362000 0 0 0 3345000 0 1841400 0 0 0 0 0 0 0 0 0 17682 632 17134 328801;328802;328803;328804;328805;328806;328807;328808;328809 200695;200696;200697;200698;200699;200700 200699 6 RLGNSVDWER Unmodified 1230.6105 0.6105333 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.723 17.488 2 0.0044827 5942 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 72.243 44.025 91540000 11033000 0 0 0 0 0 9959300 9253200 7166800 0 0 0 6298300 4720600 7617800 0 0 0 10928000 11998000 12565000 0 0 0 17683 158 17135 328810;328811;328812;328813;328814;328815;328816;328817;328818;328819 200701;200702 200701 2 RLGVQLD Unmodified 799.4552 0.45520186 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.742 21.668 2 0.0023331 8665 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.5 116.14 652180000 151960000 119240000 124250000 2318200 3689600 3899500 25887000 32788000 25990000 1356600 1370500 0 28410000 0 22284000 0 0 0 34314000 34614000 39812000 0 0 0 17684 334 17136 328820;328821;328822;328823;328824;328825;328826;328827;328828;328829;328830;328831;328832;328833;328834;328835;328836 200703;200704;200705;200706;200707;200708;200709;200710;200711;200712;200713;200714 200711 12 RLHEFGGDITK Unmodified 1271.6622 0.66223452 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 2 2 2 1 2 1 13.16 13.924 2;3 0.00029098 4110 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 110.39 68.939 184830000 41828000 18959000 15362000 0 0 0 30671000 38662000 29856000 0 852310 0 6412900 0 0 0 0 0 0 0 2229600 0 0 0 17685 757 17137 328837;328838;328839;328840;328841;328842;328843;328844;328845;328846;328847;328848;328849;328850 200715;200716;200717;200718;200719;200720 200719 6 RLHQNQVFGLTVPLITK Unmodified 1963.1367 0.13671526 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 3 3 3 3 3 2 3 3 3 37.906 36.226 2;3;4 8.3546E-07 17552 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.78 97.073 951700000 88680000 73861000 61198000 1140700 0 0 67439000 86840000 88041000 0 0 0 65938000 58461000 70568000 0 0 0 95653000 101190000 92694000 0 0 0 17686 1024 17138 328851;328852;328853;328854;328855;328856;328857;328858;328859;328860;328861;328862;328863;328864;328865;328866;328867;328868;328869;328870;328871;328872;328873;328874;328875;328876;328877;328878;328879;328880;328881;328882;328883;328884;328885;328886;328887 200721;200722;200723;200724;200725;200726;200727;200728;200729;200730;200731;200732;200733;200734;200735;200736;200737;200738;200739;200740;200741;200742;200743;200744 200735 23 RLHTVLER Unmodified 1022.5985 0.59851205 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.862 12.526 2 0.00030724 2919 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 150.24 82.34 885060000 55736000 49127000 50242000 8403400 5476000 6017900 78865000 73999000 79066000 13774000 11750000 12911000 56941000 63480000 56609000 4861900 0 0 74494000 79159000 77607000 7457500 9668000 9412300 17687 245 17139 328888;328889;328890;328891;328892;328893;328894;328895;328896;328897;328898;328899;328900;328901;328902;328903;328904;328905;328906;328907;328908;328909 200745;200746;200747;200748;200749;200750;200751 200745 7 RLIEATQFSMAHQDVR Unmodified 1900.9578 0.95776461 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 1 1 24.436 23.021 2;3 1.4503E-18 8069 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 200.19 156 1545500000 0 0 0 0 0 0 0 0 0 536860000 512100000 492260000 0 0 0 0 0 0 0 0 0 0 1566100 2714600 17688 497 17140 328910;328911;328912;328913;328914;328915;328916;328917;328918;328919 200752;200753;200754;200755;200756;200757;200758;200759;200760;200761 200755 9 RLIEATQFSMAHQDVR Oxidation (M) 1916.9527 0.95267924 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS 2 2 2 24.347 22.799 3;4 3.0278E-07 8257 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 109.14 104.38 66560000 0 0 0 0 0 0 0 0 0 19748000 21825000 24987000 0 0 0 0 0 0 0 0 0 0 0 0 17689 497 17140 328920;328921;328922;328923;328924;328925 200762;200763;200764;200765 200762 294 4 RLIMGLADGEVLVDGR Unmodified 1712.9243 0.92433922 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 2 2 2 40.793 39.126 2;3 2.0831E-61 19139 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 307.33 277.12 1048200000 144530000 102250000 31307000 836870 0 0 86878000 15828000 84493000 0 0 0 125470000 114690000 26566000 0 0 0 109560000 118570000 87186000 0 0 0 17690 271 17141 328926;328927;328928;328929;328930;328931;328932;328933;328934;328935;328936;328937;328938;328939;328940;328941;328942;328943;328944;328945;328946;328947;328948;328949 200766;200767;200768;200769;200770;200771;200772;200773;200774;200775;200776;200777;200778;200779;200780;200781;200782;200783;200784;200785;200786 200778 21 RLLAEHNLDASAIK Unmodified 1549.8576 0.85763986 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 1 2 2 18.282 18.762 2;3 9.9113E-11 7049 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 192.15 179.17 1320600000 116870000 143840000 119430000 4373000 711450 4551100 73134000 65256000 63810000 3255300 4275300 3179600 68105000 78679000 72038000 2796400 1847900 3098200 154870000 129720000 173360000 10347000 11990000 11018000 17691 938 17142 328950;328951;328952;328953;328954;328955;328956;328957;328958;328959;328960;328961;328962;328963;328964;328965;328966;328967;328968;328969;328970;328971;328972;328973;328974;328975;328976;328977;328978;328979;328980;328981;328982;328983;328984;328985;328986;328987;328988;328989;328990;328991;328992;328993;328994;328995;328996;328997;328998;328999;329000;329001;329002 200787;200788;200789;200790;200791;200792;200793;200794;200795;200796;200797;200798;200799;200800;200801;200802;200803;200804;200805;200806;200807;200808;200809;200810;200811;200812 200800 26 RLLDLAAPDIIVR Unmodified 1463.8824 0.88239805 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 3 4 4 1 3 4 5 1 4 4 4 42.228 40.753 2;3 1.0308E-31 14371 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 267.02 267.02 7765600000 3603000 4862200 3724600 2941800 2339500 1777500 0 0 0 134920000 469730000 454420000 0 1519100 0 1173600000 1712200000 2095800000 0 0 3015300 548180000 618700000 534260000 17692 458 17143 329003;329004;329005;329006;329007;329008;329009;329010;329011;329012;329013;329014;329015;329016;329017;329018;329019;329020;329021;329022;329023;329024;329025;329026;329027;329028;329029;329030;329031;329032;329033;329034;329035;329036;329037;329038;329039;329040;329041;329042;329043;329044;329045;329046 200813;200814;200815;200816;200817;200818;200819;200820;200821;200822;200823;200824;200825;200826;200827;200828;200829;200830;200831;200832;200833;200834;200835;200836 200816 23 RLLENGANTSFVNR Unmodified 1589.8274 0.82740237 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 20.734 20.545 3 6.5333E-06 6437 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 103.23 99.262 46804000 0 0 0 1267700 0 0 0 0 0 7071500 6177600 4838100 0 0 0 0 2501300 1646700 0 0 0 9690700 6272700 7337700 17693 215 17144 329047;329048;329049;329050;329051;329052;329053;329054;329055 200837;200838;200839;200840 200840 4 RLLTTCNIPVPSDVR Unmodified 1739.9352 0.93523826 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 3 2 2 2 2 2 2 2 2 2 3 2 30.583 29.257 2;3 1.3297E-06 13906 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.24 122.39 479710000 49309000 47351000 45714000 0 0 0 59555000 12036000 54236000 0 0 0 28367000 30351000 25408000 0 0 0 43192000 50521000 33672000 0 0 0 17694 321 17145 329056;329057;329058;329059;329060;329061;329062;329063;329064;329065;329066;329067;329068;329069;329070;329071;329072;329073;329074;329075;329076;329077;329078;329079;329080;329081 200841;200842;200843;200844;200845;200846;200847;200848;200849;200850;200851;200852;200853;200854 200845 14 RLMEEEGILAGISSGAAVAAALK Unmodified 2256.2148 0.21476716 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 3 3 2 1 1 3 3 3 1 1 1 3 3 3 1 3 3 3 1 1 1 50.993 49.738 2;3;4 2.0515E-43 24004 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 252.12 243.32 3373200000 240810000 225120000 209090000 9302200 8002400 6251200 424740000 354440000 302580000 4041000 3370600 4409700 222550000 249530000 240860000 0 2230000 0 297410000 278440000 280730000 3545700 3082600 2674100 17695 666 17146 329082;329083;329084;329085;329086;329087;329088;329089;329090;329091;329092;329093;329094;329095;329096;329097;329098;329099;329100;329101;329102;329103;329104;329105;329106;329107;329108;329109;329110;329111;329112;329113;329114;329115;329116;329117;329118;329119;329120;329121;329122;329123;329124;329125;329126;329127;329128 200855;200856;200857;200858;200859;200860;200861;200862;200863;200864;200865;200866;200867;200868;200869;200870;200871;200872;200873;200874;200875;200876;200877;200878;200879;200880;200881;200882;200883;200884;200885;200886 200869 32 RLMEEEGILAGISSGAAVAAALK Oxidation (M) 2272.2097 0.20968178 666 P0ABK5 cysK Cysteine synthase A yes yes 0 1 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 49.388 47.986 3 0.0084147 23560 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 55.734 53.011 67821000 6000700 5737300 8322500 0 0 0 4973800 8674000 13588000 0 0 0 0 0 4986700 0 0 0 10048000 5490100 0 0 0 0 17696 666 17146 329129;329130;329131;329132;329133;329134;329135;329136;329137 200887 200887 367 0 RLMLLAPIIK Unmodified 1166.7573 0.75732088 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 35.999 36.088 2;3 0.00071019 12350 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 109.86 109.86 55114000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22086000 15950000 17078000 0 0 0 0 0 0 17697 222 17147 329138;329139;329140;329141;329142;329143 200888;200889;200890;200891;200892;200893 200892 6 RLNDVEYHESIDEMK Unmodified 1876.8625 0.86252683 650 P0ABD3 bfr Bacterioferritin yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 19.695 20.125 3;4 0.058799 8037 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 35.091 33.125 49657000 17949000 11042000 9648300 0 0 0 0 7953700 3063800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17698 650 17148 329144;329145;329146;329147;329148 200894;200895;200896 200894 0 RLNSWLR Unmodified 943.53518 0.53518351 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.034 18.466 2 0.030843 7088 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 72.492 31.64 92718000 0 3347300 0 2656400 2434300 2369700 12446000 9291800 11164000 6002400 4538500 3441800 5875700 5383700 0 0 0 0 8860600 0 9246600 3412700 0 2246500 17699 656 17149 329149;329150;329151;329152;329153;329154;329155;329156;329157;329158;329159;329160;329161;329162;329163;329164 200897 200897 1 RLPDNSAPYTSTIVFLVR Unmodified 2048.1055 0.10547471 992 P0AG78 sbp Sulfate-binding protein yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 46.419 44.877 3 0.15564 21842 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 26.144 22.482 37063000 3902200 4395700 0 0 0 0 4369400 3391100 3620400 0 0 0 0 2081500 0 0 0 0 3755500 6272300 5275200 0 0 0 17700 992 17150 329165;329166;329167;329168;329169;329170;329171;329172;329173 200898 200898 0 RLPELMSLLR Unmodified 1226.7169 0.71691263 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.655 40.981 2;3 3.9023E-12 20528 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 208.63 206.36 2236200000 166320000 182150000 174530000 0 0 0 328290000 294150000 233800000 0 0 0 138700000 126930000 130300000 0 0 0 153800000 156790000 150470000 0 0 0 17701 256 17151 329174;329175;329176;329177;329178;329179;329180;329181;329182;329183;329184;329185;329186;329187;329188;329189;329190;329191;329192;329193;329194;329195;329196;329197 200899;200900;200901;200902;200903;200904;200905;200906;200907;200908;200909;200910;200911;200912;200913;200914;200915;200916;200917;200918;200919 200900 21 RLPHFAVSIAVR Unmodified 1364.8041 0.80408815 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 28.045 26.762 3 0.14027 12195 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 19.199 17.892 61322000 8112600 6899300 4938900 0 0 636230 8372400 0 7073700 0 0 950600 0 0 0 0 0 0 6946000 9993200 6644800 0 753870 0 17702 787 17152 329198;329199;329200;329201;329202;329203;329204;329205;329206;329207;329208 200920 200920 0 RLQAFEGVVIAIR Unmodified 1470.8671 0.86708234 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 2 38.89 37.175 3 0.0047921 14505 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 50.563 50.563 57282000 4470400 0 0 1965400 1883200 2003200 2811300 0 2690100 4272300 1603800 977380 2330300 2134100 2107900 4747600 3171000 589180 3364700 3777800 3480600 3384200 2621700 2895400 17703 352 17153 329209;329210;329211;329212;329213;329214;329215;329216;329217;329218;329219;329220;329221;329222;329223;329224;329225;329226;329227;329228;329229;329230;329231;329232;329233;329234;329235;329236 200921;200922;200923;200924;200925;200926 200925 1 RLQDPLAELVK Unmodified 1280.7452 0.74523587 1586 P46837 yhgF Protein YhgF yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 35.269 33.754 2;3 9.4457E-05 15468 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 103.91 97.762 301170000 25930000 23275000 21379000 481510 0 520120 27666000 28083000 27485000 0 0 0 19431000 19541000 18245000 0 0 0 25969000 31492000 31117000 550520 0 0 17704 1586 17154 329237;329238;329239;329240;329241;329242;329243;329244;329245;329246;329247;329248;329249;329250;329251;329252;329253;329254;329255;329256;329257;329258;329259;329260;329261;329262;329263 200927;200928;200929;200930;200931;200932;200933;200934;200935;200936;200937 200936 11 RLQQAQK Unmodified 870.50355 0.50354903 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.476 7.1016 2 0.0057211 956 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 103.28 0 108150000 5428900 5896100 6121200 381320 0 363340 7695300 8226000 6867600 1413100 0 0 6103300 5814100 8228100 4736600 3161400 3561200 10984000 8889200 9012300 2024700 1650800 1594900 17705 1787 17155 329264;329265;329266;329267;329268;329269;329270;329271;329272;329273;329274;329275;329276;329277;329278;329279;329280;329281;329282;329283;329284 200938;200939;200940;200941;200942;200943;200944;200945;200946;200947 200946 10 RLQQQLR Unmodified 940.55665 0.55664724 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 10.702 11.428 2 0.013005 2724 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.866 61.972 79018000 9214700 6126300 9148000 0 0 0 21096000 14449000 18985000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17706 1413 17156 329285;329286;329287;329288;329289;329290 200948 200948 1 RLQTIIER Unmodified 1027.6138 0.61382777 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.756 15.522 2 0.0005916 5297 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.13 41.389 656550000 38759000 35970000 46524000 0 0 0 74498000 81910000 93310000 0 0 0 46840000 37687000 39288000 0 0 0 49806000 53582000 58380000 0 0 0 17707 468 17157 329291;329292;329293;329294;329295;329296;329297;329298;329299;329300;329301;329302 200949;200950;200951;200952;200953 200952 5 RLQVTSEK Unmodified 959.53999 0.53999412 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.811 11.431 2 0.0010162 2724 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.18 63.572 305910000 51399000 38190000 29126000 0 9964000 0 23381000 18916000 16875000 0 3883600 4777300 13672000 14315000 11700000 8493800 5479600 1936500 19963000 14513000 19324000 0 0 0 17708 734 17158 329303;329304;329305;329306;329307;329308;329309;329310;329311;329312;329313;329314;329315;329316;329317;329318;329319;329320 200954;200955;200956;200957;200958;200959 200956 6 RLSPPAFR Unmodified 942.53993 0.53993454 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.07 17.623 2 0.00093313 5869 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 124.98 74.017 593790000 24545000 26892000 26267000 0 0 0 74043000 60422000 66195000 5794900 5700100 4713100 58655000 72005000 0 0 0 0 57717000 54427000 56414000 0 0 0 17709 539 17159 329321;329322;329323;329324;329325;329326;329327;329328;329329;329330;329331;329332;329333;329334 200960;200961;200962;200963;200964;200965;200966;200967;200968;200969 200968 10 RLTGDQTAALR Unmodified 1200.6575 0.65748349 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.37 13.244 2 7.8142E-06 3864 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 151.22 109.11 2889900000 0 0 0 2020700 1868400 2128600 292960000 305450000 277080000 0 0 1553300 314830000 348690000 314180000 0 0 0 383770000 338260000 307080000 0 0 0 17710 38 17160 329335;329336;329337;329338;329339;329340;329341;329342;329343;329344;329345;329346;329347 200970;200971;200972;200973;200974;200975;200976;200977;200978 200974 9 RLTLQDNPAIAR Unmodified 1366.7681 0.76809658 1527 P39337 yjgM Uncharacterized N-acetyltransferase YjgM yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 2 2 1 1 2 2 2 2 20.466 20.88 2;3 0.00014639 8170 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.805 73.239 116070000 14319000 14354000 11477000 0 0 0 4977000 10266000 12649000 0 0 0 3341800 3501200 6089500 0 0 0 11226000 10429000 13444000 0 0 0 17711 1527 17161 329348;329349;329350;329351;329352;329353;329354;329355;329356;329357;329358;329359;329360;329361;329362;329363;329364;329365;329366;329367;329368 200979;200980;200981;200982;200983 200982 2 RLTLTEK Unmodified 859.51272 0.51271674 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.367 12.764 2 0.0012992 2560 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 138.24 106.29 63386000 0 0 0 13948000 9423200 9959500 0 0 0 4381900 3255300 3162600 0 0 0 1391700 633270 1570400 0 0 0 6020100 4691700 4948100 17712 1899 17162 329369;329370;329371;329372;329373;329374;329375;329376;329377;329378;329379;329380 200984;200985;200986 200984 3 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK Oxidation (M) 3713.7587 0.75866197 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 3 3 2 2 2 46.236 44.952 4 3.5667E-10 18162 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 90.323 88.759 145220000 0 0 0 0 0 0 0 0 0 22114000 17065000 9721800 0 0 0 10213000 22150000 28342000 0 0 0 11140000 10863000 13605000 17713 458 17163 329381;329382;329383;329384;329385;329386;329387;329388;329389;329390;329391;329392;329393;329394;329395;329396;329397;329398;329399;329400;329401;329402 200987;200988;200989;200990;200991;200992;200993;200994;200995;200996;200997;200998;200999;201000 200996 238;239 14 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK Unmodified 3697.7637 0.76374734 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 3 3 3 2 2 2 5 5 4 2 2 2 3 4 4 49.232 48.145 3;4;5 1.8036E-98 17472 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 307.16 305.63 4740100000 112730000 117460000 107210000 0 1432600 1078900 57255000 60718000 55917000 239740000 219280000 288670000 70457000 70372000 67681000 592170000 586470000 734140000 111850000 106760000 93234000 373660000 338580000 333230000 17714 458 17163 329403;329404;329405;329406;329407;329408;329409;329410;329411;329412;329413;329414;329415;329416;329417;329418;329419;329420;329421;329422;329423;329424;329425;329426;329427;329428;329429;329430;329431;329432;329433;329434;329435;329436;329437;329438;329439;329440;329441;329442;329443;329444;329445;329446;329447;329448;329449;329450;329451;329452;329453;329454;329455;329456;329457;329458;329459;329460;329461;329462 201001;201002;201003;201004;201005;201006;201007;201008;201009;201010;201011;201012;201013;201014;201015;201016;201017;201018;201019;201020;201021;201022;201023;201024;201025;201026;201027;201028;201029;201030;201031;201032;201033;201034;201035;201036;201037;201038;201039;201040;201041;201042;201043;201044;201045;201046;201047;201048;201049;201050 201014 49 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR Oxidation (M) 4209.0392 0.039193922 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 4 5 3 3 2 44.68 43.768 4;5 9.7343E-13 16161 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 103.85 102.47 206880000 0 0 0 0 0 0 0 0 0 5837700 16716000 21030000 0 0 0 36831000 49293000 40850000 0 0 0 0 25202000 11118000 17715 458 17164 329463;329464;329465;329466;329467;329468;329469;329470;329471;329472;329473;329474;329475;329476;329477;329478;329479;329480;329481;329482;329483;329484;329485 201051;201052;201053;201054;201055;201056;201057;201058;201059;201060;201061;201062;201063;201064;201065;201066;201067;201068;201069 201052 238;239 18 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR Unmodified 4193.0443 0.0442793 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 4 1 1 1 5 3 3 1 1 1 3 4 3 47.333 46.158 3;4;5;6 1.176E-47 17380 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 215.43 214.23 5309200000 17591000 21245000 19419000 0 0 0 13850000 9183000 0 295700000 258730000 384070000 17811000 12101000 14428000 923040000 1002600000 1079700000 20096000 24431000 21966000 377820000 453900000 341490000 17716 458 17164 329486;329487;329488;329489;329490;329491;329492;329493;329494;329495;329496;329497;329498;329499;329500;329501;329502;329503;329504;329505;329506;329507;329508;329509;329510;329511;329512;329513;329514;329515;329516;329517;329518;329519;329520;329521;329522;329523;329524;329525 201070;201071;201072;201073;201074;201075;201076;201077;201078;201079;201080;201081;201082;201083;201084;201085;201086;201087;201088;201089;201090;201091;201092;201093;201094;201095 201070 26 RLVEHKK Unmodified 908.55558 0.55558461 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 8.9012 9.0568 2 0.014705 1487 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 107.43 81.321 21292000 0 0 0 0 0 0 0 0 0 7376600 7970900 5944300 0 0 0 0 0 0 0 0 0 0 0 0 17717 982 17165 329526;329527;329528 201096;201097;201098 201098 3 RLVITPVDGSDPYEEMIPK Oxidation (M) 2174.0929 0.092920692 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 4 7 6 7 4 5 4 37.204 35.92 2;3 3.5314E-13 12084 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 136.6 128.88 759540000 0 0 0 0 0 0 0 0 0 52374000 47386000 47140000 0 0 0 150970000 138550000 151660000 0 0 0 51189000 64910000 55356000 17718 458 17166 329529;329530;329531;329532;329533;329534;329535;329536;329537;329538;329539;329540;329541;329542;329543;329544;329545;329546;329547;329548;329549;329550;329551;329552;329553;329554;329555;329556;329557;329558;329559;329560;329561;329562;329563;329564;329565;329566;329567;329568;329569;329570;329571;329572;329573;329574 201099;201100;201101;201102;201103;201104;201105;201106;201107;201108;201109;201110;201111;201112;201113;201114;201115;201116;201117;201118;201119;201120;201121;201122;201123;201124;201125;201126;201127;201128;201129;201130;201131;201132;201133;201134;201135;201136;201137;201138;201139;201140;201141;201142;201143;201144 201100 240 46 RLVITPVDGSDPYEEMIPK Unmodified 2158.098 0.09800607 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 4 4 4 2 2 2 5 5 4 2 2 2 4 4 3 42.676 41.148 2;3;4 3.8189E-17 16600 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 185.87 175.82 18220000000 51377000 53924000 55895000 4445700 5976500 6232100 47853000 40707000 41553000 1193100000 1084800000 1042600000 49334000 48729000 43468000 3854500000 3501300000 3375200000 72283000 68383000 66889000 1217800000 1200000000 1093700000 17719 458 17166 329575;329576;329577;329578;329579;329580;329581;329582;329583;329584;329585;329586;329587;329588;329589;329590;329591;329592;329593;329594;329595;329596;329597;329598;329599;329600;329601;329602;329603;329604;329605;329606;329607;329608;329609;329610;329611;329612;329613;329614;329615;329616;329617;329618;329619;329620;329621;329622;329623;329624;329625;329626;329627;329628;329629;329630;329631;329632;329633;329634;329635;329636;329637;329638 201145;201146;201147;201148;201149;201150;201151;201152;201153;201154;201155;201156;201157;201158;201159;201160;201161;201162;201163;201164;201165;201166;201167;201168;201169;201170;201171;201172;201173;201174;201175;201176;201177;201178;201179;201180;201181;201182;201183;201184;201185;201186;201187;201188;201189;201190;201191;201192;201193;201194;201195;201196;201197;201198;201199;201200;201201;201202 201163 58 RLVMEAACLFAQR Unmodified 1563.8014 0.80138731 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 37.134 34.885 3 0.00049433 13814 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 66.708 65.341 20098000 0 0 0 644850 0 0 0 0 0 4731100 3913000 5309400 0 0 0 0 0 0 0 0 0 1864700 3634800 0 17720 1781 17167 329639;329640;329641;329642;329643;329644 201203;201204 201203 2 RLVNWDPK Unmodified 1026.5611 0.56106391 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 17.956 18.641 2 0.010046 6567 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 82.386 75.999 119450000 11400000 13303000 9551400 0 0 0 0 0 0 0 0 0 8950500 9462000 8435500 0 0 0 19085000 19749000 19512000 0 0 0 17721 158 17168 329645;329646;329647;329648;329649;329650;329651;329652;329653 201205;201206 201205 2 RLVVDPITR Unmodified 1067.6451 0.64512789 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 21.014 20.854 2 0.011973 8472 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 74.464 57.688 73207000 0 0 0 0 0 0 27102000 20280000 23092000 2732900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17722 722 17169 329654;329655;329656;329657 201207;201208;201209 201207 3 RLVVGGFER Unmodified 1031.5876 0.58761301 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.926 19.491 2 0.0012407 7295 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.027 66.877 671100000 62573000 47831000 48180000 0 0 0 63217000 54221000 61730000 0 0 0 57085000 49173000 48967000 0 0 0 63109000 55961000 59054000 0 0 0 17723 448;449 17170 329658;329659;329660;329661;329662;329663;329664;329665;329666;329667;329668;329669 201210;201211;201212;201213;201214;201215;201216 201215 7 RLWIDSPAR Unmodified 1112.6091 0.60907674 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.244 22.103 2;3 4.6292E-06 9036 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 203.19 189.28 587950000 88523000 73930000 75214000 0 0 0 67533000 44558000 43552000 0 0 0 24518000 27391000 26201000 0 0 0 40630000 40681000 35215000 0 0 0 17724 713 17171 329670;329671;329672;329673;329674;329675;329676;329677;329678;329679;329680;329681;329682;329683;329684;329685;329686;329687;329688;329689;329690;329691;329692;329693 201217;201218;201219;201220;201221;201222;201223;201224;201225;201226;201227;201228;201229;201230 201226 13 RLYELEK Unmodified 949.52328 0.52328142 612 P0AAT6 rsfS Ribosomal silencing factor RsfS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.674 14.578 2 0.007184 4724 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.418 43.869 267780000 35030000 21183000 19487000 0 333720 342780 27308000 24189000 20173000 0 0 0 21017000 16324000 11740000 0 0 0 28694000 21276000 20679000 0 0 0 17725 612 17172 329694;329695;329696;329697;329698;329699;329700;329701;329702;329703;329704;329705;329706;329707 201231;201232;201233 201233 3 RLYPENNEAR Unmodified 1260.6211 0.62109799 1747 P69805 manZ Mannose permease IID component yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.696 12.391 2 6.2995E-09 2785 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 192.91 177.75 381240000 4559500 4412300 6113500 2495900 1946400 2475700 50585000 46086000 43223000 31124000 22743000 26171000 19722000 17530000 21593000 0 0 0 23667000 22169000 17466000 6069900 5578700 5513900 17726 1747 17173 329708;329709;329710;329711;329712;329713;329714;329715;329716;329717;329718;329719;329720;329721;329722;329723;329724;329725;329726;329727;329728 201234;201235;201236;201237;201238;201239;201240;201241;201242;201243;201244 201234 11 RLYTTNADGELITIDTADNK Unmodified 2223.1019 0.10190547 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.119 30.551 3 0.098415 11983 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 28.675 25.287 163540000 0 8558700 5549900 0 0 0 0 7760700 9395200 2643600 1441500 0 10707000 13214000 13982000 0 0 0 24968000 22605000 27499000 6043000 6407900 2759900 17727 1819 17174 329729;329730;329731;329732;329733;329734;329735;329736;329737;329738;329739;329740;329741;329742;329743 201245 201245 1 RMDDLLQGFVAQHR Unmodified 1684.8468 0.8467576 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.078 34.517 3 3.9694E-11 17058 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 135.58 129.15 226800000 21808000 19876000 17965000 0 0 433360 29866000 26697000 28644000 0 0 0 13159000 14307000 9953300 0 0 0 12965000 16852000 14273000 0 0 0 17728 801 17175 329744;329745;329746;329747;329748;329749;329750;329751;329752;329753;329754;329755;329756 201246;201247 201246 2 RMGHAGAIIAGGK Unmodified 1237.6714 0.67135942 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.333 12.154 3 0.093773 3232 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 28.053 26.173 132980000 17189000 17726000 12480000 0 0 0 6370900 0 7780800 0 0 0 6449700 7813600 0 0 0 0 17791000 16415000 22965000 0 0 0 17729 1013 17176 329757;329758;329759;329760;329761;329762;329763;329764;329765;329766 201248;201249 201248 0 RMHELAEK Unmodified 1012.5124 0.51239916 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 10.031 10.9 2 0.0045306 2434 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 90.657 62.483 8971400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2530000 2551100 3890400 0 0 0 17730 445 17177 329767;329768;329769 201250;201251 201251 2 RMIESNLR Unmodified 1017.5389 0.53894826 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 13.046 13.151 2 1.728E-06 3081 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 193.28 121.33 270540000 0 0 0 0 0 0 0 0 0 4326100 3840800 3337800 0 0 0 98845000 80017000 80170000 0 0 0 0 0 0 17731 1089 17178 329770;329771;329772;329773;329774;329775 201252;201253;201254 201252 3 RMLQEAVDALLDNGR Oxidation (M) 1715.8625 0.86246725 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 36.466 35.128 3 0.00013186 13554 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 76.151 71.26 304430000 0 0 1829800 691450 766550 0 0 0 0 0 0 0 0 0 0 81992000 64583000 0 0 0 0 47416000 54307000 52847000 17732 458 17179 329776;329777;329778;329779;329780;329781;329782;329783 201255;201256;201257;201258 201256 243 3 RMLQEAVDALLDNGR Unmodified 1699.8676 0.86755262 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 42.223 40.662 2;3 1.0044E-26 15868 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 253.97 230.36 757450000 0 0 0 709620 980380 574080 0 0 0 36541000 39599000 34356000 0 0 0 4915100 0 347700000 0 0 0 173100000 59445000 59526000 17733 458 17179 329784;329785;329786;329787;329788;329789;329790;329791;329792;329793;329794;329795 201259;201260;201261;201262;201263;201264 201264 6 RMLQEAVDALLDNGRR Unmodified 1855.9687 0.96866365 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 36.576 35.05 3;4 1.4007E-13 13568 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 161.08 149.96 2997900000 0 0 0 0 0 0 0 0 0 86668000 86052000 84990000 0 0 0 358280000 992510000 1028300000 0 0 0 109490000 126690000 124960000 17734 458 17180 329796;329797;329798;329799;329800;329801;329802;329803;329804;329805;329806;329807;329808;329809;329810;329811;329812;329813 201265;201266;201267;201268;201269;201270;201271;201272;201273;201274;201275;201276;201277 201275 12 RMLQEAVDALLDNGRR Oxidation (M) 1871.9636 0.96357827 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 2 By matching By MS/MS By MS/MS 1 2 2 34.429 34.455 3;4 0.00014647 11592 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 70.281 62.156 73422000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13220000 26659000 33543000 0 0 0 0 0 0 17735 458 17180 329814;329815;329816;329817;329818 201278;201279;201280;201281 201279 243 4 RMNQLLVS Unmodified 959.52224 0.52223557 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.291 22.537 2 0.056601 9837 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.799 52.206 239730000 17864000 15985000 21240000 0 0 1064900 19696000 24190000 15600000 0 0 855300 20578000 17050000 16523000 0 0 0 23029000 23109000 22950000 0 0 0 17736 295 17181 329819;329820;329821;329822;329823;329824;329825;329826;329827;329828;329829;329830;329831;329832 201282;201283;201284;201285;201286;201287 201285 6 RMPGDLSEYSVIQTK Unmodified 1722.8611 0.86107026 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 31.713 30.323 2 2.0225E-11 13687 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 168.02 158.69 77147000 5331000 5103700 5107600 0 0 0 5578800 6571000 5968500 0 0 0 5268400 5478400 6510800 0 0 0 8868300 7621200 9078900 0 659950 0 17737 583 17182 329833;329834;329835;329836;329837;329838;329839;329840;329841;329842;329843;329844;329845 201288;201289;201290;201291 201291 4 RMQLNEELR Unmodified 1187.6081 0.60809046 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.795 16.664 2 0.0014928 4919 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.853 54.295 32930000 0 0 0 0 2107700 1096700 4674100 3932300 3790700 0 0 0 0 3855000 2186200 0 0 0 3682800 3772600 3831700 0 0 0 17738 245 17183 329846;329847;329848;329849;329850;329851;329852;329853;329854;329855;329856;329857 201292;201293;201294;201295;201296 201292 5 RMSIGEAK Unmodified 890.46439 0.46438634 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 11.243 11.719 2 2.2048E-09 2536 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 217.66 139.49 1356600000 0 0 0 0 0 0 7270900 5494100 0 0 0 0 3560800 4806200 0 485220000 414040000 436250000 0 0 0 0 0 0 17739 36 17184 329858;329859;329860;329861;329862;329863;329864 201297;201298 201298 2 RNDDNTWTVTVADLK Unmodified 1746.8537 0.8536767 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 34.698 33.198 3 3.7457E-06 12734 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 76.82 70.451 24109000 0 0 0 1320200 840180 0 0 0 0 0 0 0 2011300 0 0 0 2787100 0 0 0 0 6222000 5319100 5609200 17740 1435 17185 329865;329866;329867;329868;329869;329870;329871 201299;201300;201301 201299 3 RNDTEWYEHLPPEIDSQLVHK Unmodified 2605.2561 0.25611471 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 37.5 35.582 4 0.0007932 13995 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 63.706 63.687 57027000 0 0 0 0 2207700 2160600 13870000 0 0 8550800 9188700 7604200 0 0 0 0 0 2364200 3019000 0 0 3356600 2068500 2637000 17741 122 17186 329872;329873;329874;329875;329876;329877;329878;329879;329880;329881;329882 201302;201303;201304;201305;201306;201307 201303 6 RNDVNPEITDR Unmodified 1327.648 0.64804102 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.519 13.351 2 4.027E-20 3902 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 244.01 217.62 1842200000 132510000 134270000 123740000 0 0 0 210240000 205600000 228900000 0 0 0 138250000 111220000 134770000 0 0 0 135100000 138390000 149260000 0 0 0 17742 448;449 17187 329883;329884;329885;329886;329887;329888;329889;329890;329891;329892;329893;329894 201308;201309;201310;201311;201312;201313;201314;201315;201316;201317;201318;201319 201308 12 RNDVNPEITDRFEFFIGGR Unmodified 2281.124 0.12397832 448;449 P0A8N3;P0A8N5 lysS;lysU Lysine--tRNA ligase;Lysine--tRNA ligase, heat inducible no no 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 1 1 1 1 1 1 2 2 43.414 41.748 3;4 1.1591E-22 20662 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 186.97 179.28 860170000 28442000 25226000 38698000 0 0 0 57112000 188460000 153520000 4471000 1882700 2612800 44397000 45297000 38434000 0 1294600 0 29662000 108240000 92411000 0 0 0 17743 448;449 17188 329895;329896;329897;329898;329899;329900;329901;329902;329903;329904;329905;329906;329907;329908;329909;329910;329911;329912;329913;329914;329915 201320;201321;201322;201323;201324;201325;201326;201327;201328;201329 201323 8 RNEEAKK Unmodified 873.46683 0.46682918 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 2 1 1 2.4499 3.3528 2 0.0072307 512 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.37 0 117250000 36686000 40698000 29055000 0 0 0 0 0 0 0 0 0 862240 708070 728910 0 0 0 3016100 2711600 2786700 0 0 0 17744 1217 17189 329916;329917;329918;329919;329920;329921;329922;329923;329924;329925;329926 201330;201331;201332;201333;201334 201333 5 RNELPDTLGLR Unmodified 1282.6993 0.69934831 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 26.061 24.906 2;3 2.5047E-26 11176 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 284.62 261.1 731910000 61730000 57319000 46041000 0 0 0 54445000 63042000 60491000 0 0 0 60364000 54727000 53634000 0 0 0 76972000 73711000 69429000 0 0 0 17745 1889 17190 329927;329928;329929;329930;329931;329932;329933;329934;329935;329936;329937;329938;329939;329940;329941;329942;329943;329944;329945;329946;329947;329948;329949;329950 201335;201336;201337;201338;201339;201340;201341;201342;201343;201344;201345;201346;201347 201343 11 RNEPAHLPHILQR Unmodified 1579.8695 0.86954196 1314 P27859 tatD Tat-linked quality control protein TatD yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 15.275 16.036 4 0.15989 5423 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 13.119 8.8026 28159000 0 0 0 0 0 0 3279800 5477000 3510400 0 0 0 0 0 0 0 0 0 4739500 5768800 5383200 0 0 0 17746 1314 17191 329951;329952;329953;329954;329955;329956 201348;201349 201349 0 RNEQDQK Unmodified 916.43626 0.43625733 577 P0AA57 yobA Protein YobA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 3.2294 4.0622 2 0.031282 509 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.138 65.684 7589500 2318600 3068700 2202100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17747 577 17192 329957;329958;329959 201350;201351;201352 201350 3 RNETNELFIPPGPR Unmodified 1638.8478 0.84780346 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 28.379 27.131 2;3 3.7747E-11 12522 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 174.05 171.9 532750000 56652000 46832000 42949000 0 0 0 37998000 41938000 45067000 0 0 0 38757000 34871000 36280000 0 0 0 45831000 53550000 52024000 0 0 0 17748 561 17193 329960;329961;329962;329963;329964;329965;329966;329967;329968;329969;329970;329971;329972;329973;329974;329975;329976;329977;329978;329979;329980;329981;329982;329983 201353;201354;201355;201356;201357;201358;201359;201360;201361;201362;201363 201356 10 RNFGMPAPEGYR Unmodified 1393.6561 0.65610329 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 20.949 21.418 2 0.00011959 8548 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 95.573 79.692 33805000 4514000 4511500 3466100 0 0 0 0 0 0 0 0 0 3596700 3383100 2872500 0 0 0 4075800 4327100 3057700 0 0 0 17749 651 17194 329984;329985;329986;329987;329988;329989;329990;329991;329992 201364;201365 201364 2 RNIHQQALR Unmodified 1134.637 0.63702282 104 P05020 pyrC Dihydroorotase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 10.213 11.037 3 0.03037 2460 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 49.444 47.29 96025000 25683000 21416000 23315000 0 0 0 0 0 0 0 0 0 6674300 4208400 3234600 0 0 0 11494000 0 0 0 0 0 17750 104 17195 329993;329994;329995;329996;329997;329998;329999 201366 201366 1 RNMINVALNNGTLQHPVK Unmodified 2018.0844 0.084362112 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1 2 1 1 2 2 2 1 1 1 1 2 1 1 1 2 1 24.669 23.644 3;4 2.0684E-22 10272 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.7 133.86 223430000 25933000 32447000 26327000 1762100 1821900 2233100 12829000 7388300 4360000 12208000 9843400 9513700 6879900 8516400 5354200 4000600 4838300 0 12060000 13567000 11622000 5637700 4289300 0 17751 376 17196 330000;330001;330002;330003;330004;330005;330006;330007;330008;330009;330010;330011;330012;330013;330014;330015;330016;330017;330018;330019;330020;330021;330022;330023;330024;330025;330026;330027;330028;330029 201367;201368;201369;201370;201371;201372;201373;201374;201375;201376;201377;201378 201376 11 RNNFTTGR Unmodified 964.48388 0.48387622 337 P0A7E5 pyrG CTP synthase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.357 11.172 2 1.0834E-06 2517 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 196.95 118.18 1018700000 41425000 41110000 42692000 0 0 0 112480000 102620000 107740000 0 0 0 91473000 87487000 79395000 0 0 0 102700000 109430000 100160000 0 0 0 17752 337 17197 330030;330031;330032;330033;330034;330035;330036;330037;330038;330039;330040;330041 201379;201380;201381;201382;201383;201384;201385;201386;201387;201388 201381 10 RNNVVVSR Unmodified 942.53591 0.5359118 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.489 11.148 2 3.2891E-06 2616 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 184.38 139.4 931180000 106840000 97686000 93412000 2759300 1543100 0 70958000 59688000 57187000 0 10767000 0 51172000 55508000 58087000 15095000 15101000 10057000 84094000 74026000 67200000 0 0 0 17753 990 17198 330042;330043;330044;330045;330046;330047;330048;330049;330050;330051;330052;330053;330054;330055;330056;330057;330058;330059 201389;201390;201391;201392;201393;201394;201395;201396;201397;201398;201399;201400;201401;201402 201395 14 RNPFPLVLLCLR Unmodified 1496.865 0.86497385 1011 P0AGE4 sstT Serine/threonine transporter SstT yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 49.887 48.526 3 3.5527E-05 17535 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 100.55 95.377 37780000 10457000 9188600 8889700 2762700 2983700 2484000 0 0 0 0 0 0 0 0 0 0 0 0 1014400 0 0 0 0 0 17754 1011 17199 330060;330061;330062;330063;330064;330065;330066 201403;201404;201405;201406 201404 4 RNPLYSTAIGK Unmodified 1218.6721 0.67207093 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 16.956 17.782 2 0.00038569 6384 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 90.696 62.477 65647000 7486400 0 0 0 0 0 0 0 0 0 0 0 7727900 7574400 8290400 0 0 0 13118000 13820000 7629600 0 0 0 17755 1845 17200 330067;330068;330069;330070;330071;330072;330073 201407;201408;201409;201410;201411 201409 4 RNPMDFVLWK Unmodified 1304.67 0.66996244 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.123 40.424 2;3 0.00011744 19703 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.06 118.43 323920000 25705000 19704000 20026000 0 0 0 24942000 28280000 22959000 0 0 0 26513000 22522000 24049000 0 0 0 37065000 35373000 36786000 0 0 0 17756 1188 17201 330074;330075;330076;330077;330078;330079;330080;330081;330082;330083;330084;330085;330086;330087;330088;330089;330090;330091;330092;330093;330094;330095;330096;330097 201412;201413;201414;201415;201416;201417;201418;201419;201420;201421;201422;201423;201424;201425;201426;201427;201428;201429;201430;201431;201432;201433 201419 22 RNPQALVQLCLGAFK Unmodified 1713.9348 0.93484433 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 1 2 1 2 2 2 2 39.436 37.623 2;3 6.7679E-20 18654 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 205.13 141.19 339360000 0 0 0 0 0 0 46307000 45592000 46858000 0 1176800 0 41547000 7314700 40703000 0 0 0 39203000 34059000 36602000 0 0 0 17757 1467 17202 330098;330099;330100;330101;330102;330103;330104;330105;330106;330107;330108;330109;330110;330111;330112;330113;330114;330115 201434;201435;201436;201437;201438;201439;201440;201441 201438 8 RNSLMITLSQSGETADTLAGLR Unmodified 2333.2009 0.20090801 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.131 41.616 3 4.8688E-15 20719 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.86 120.4 119320000 7202600 8753100 6340700 0 0 0 15104000 13661000 8961500 0 0 0 7647000 9605200 8386000 0 0 0 10454000 12219000 10982000 0 0 0 17758 1137 17203 330116;330117;330118;330119;330120;330121;330122;330123;330124;330125;330126;330127 201442;201443 201442 1 RNYGSLIGEATAER Unmodified 1535.7692 0.76921879 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 22.812 22.183 2;3 2.6472E-19 9390 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 203.87 180.26 483820000 35245000 31960000 19421000 7506800 7184000 0 23162000 0 23267000 36614000 26732000 39173000 14845000 22562000 21443000 8302700 5942300 5714700 27041000 39974000 39746000 18659000 13048000 16277000 17759 564 17204 330128;330129;330130;330131;330132;330133;330134;330135;330136;330137;330138;330139;330140;330141;330142;330143;330144;330145;330146;330147;330148;330149;330150;330151;330152;330153;330154;330155;330156;330157;330158;330159;330160;330161;330162 201444;201445;201446;201447;201448;201449;201450;201451;201452;201453;201454;201455;201456;201457;201458;201459 201456 16 RPASEAALLYEETAESVEK Unmodified 2092.0324 0.032428926 730 P0ACG8 hslR Heat shock protein 15 yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 35.793 34.184 3 1.1109E-06 16474 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 81.003 77.563 37670000 13281000 0 0 0 0 0 4289700 4494800 0 0 0 0 0 3919800 3388500 0 0 0 0 8296300 0 0 0 0 17760 730 17205 330163;330164;330165;330166;330167;330168 201460 201460 1 RPDDWHLHLR Unmodified 1343.6847 0.6847013 104 P05020 pyrC Dihydroorotase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 17.558 18.049 2;3 0.00042759 6523 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.52 111.08 402750000 83425000 0 14289000 0 0 0 8519900 3605900 2601200 2068100 0 0 30848000 34780000 39953000 3369700 4001200 5855200 61397000 50143000 57891000 0 0 0 17761 104 17206 330169;330170;330171;330172;330173;330174;330175;330176;330177;330178;330179;330180;330181;330182;330183;330184;330185;330186;330187;330188;330189;330190;330191;330192;330193;330194;330195;330196;330197 201461;201462;201463;201464;201465;201466;201467;201468;201469;201470 201468 10 RPDGSVIR Unmodified 898.49846 0.49846366 820 P0ADY3 rplN 50S ribosomal protein L14 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.188 11.784 2 5.3073E-09 2432 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 206.16 160.28 5515200000 0 789880000 807080000 33516000 38490000 39328000 266420000 246320000 285970000 65804000 64585000 62719000 316950000 311690000 291760000 49561000 52891000 43420000 520910000 492660000 484890000 82305000 78639000 89440000 17762 820 17207 330198;330199;330200;330201;330202;330203;330204;330205;330206;330207;330208;330209;330210;330211;330212;330213;330214;330215;330216;330217;330218;330219;330220 201471;201472;201473;201474;201475;201476;201477;201478;201479;201480;201481;201482;201483;201484;201485;201486;201487;201488;201489;201490 201479 20 RPDGSVNVR Unmodified 998.52574 0.52574104 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.826 11.371 2 0.00016172 2664 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.76 103.61 1110600000 23370000 13838000 0 2348600 0 0 161900000 148760000 175150000 33648000 29269000 26218000 102360000 99248000 102240000 11961000 6984300 7260000 56837000 52580000 44640000 0 5004200 7009600 17763 25 17208 330221;330222;330223;330224;330225;330226;330227;330228;330229;330230;330231;330232;330233;330234;330235;330236;330237;330238;330239;330240 201491;201492;201493;201494;201495;201496;201497;201498;201499;201500;201501;201502;201503 201495 13 RPDLIIR Unmodified 881.54469 0.54468557 137 P06983 hemC Porphobilinogen deaminase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.909 17.666 2 0.00087006 6435 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 147.34 30.176 167650000 19032000 23304000 16437000 0 0 0 13842000 12033000 14158000 0 0 0 8497700 8837700 8147100 0 0 0 14509000 14656000 14191000 0 0 0 17764 137 17209 330241;330242;330243;330244;330245;330246;330247;330248;330249;330250;330251;330252 201504;201505;201506;201507;201508;201509;201510 201507 7 RPDLMIDGPLQYDAAVMADVAK Unmodified 2388.1818 0.18175247 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 1 2 2 1 1 2 2 2 1 1 51.472 50.266 2;3 7.5719E-35 23521 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 265.37 226.36 2355600000 149360000 144380000 126580000 1606700 1501400 1621700 221620000 206300000 200610000 15814000 13249000 16981000 34345000 277510000 278760000 3092700 0 1412100 224490000 216880000 215530000 0 1949600 1956900 17765 539 17210 330253;330254;330255;330256;330257;330258;330259;330260;330261;330262;330263;330264;330265;330266;330267;330268;330269;330270;330271;330272;330273;330274;330275;330276;330277;330278;330279;330280;330281;330282;330283;330284;330285 201511;201512;201513;201514;201515;201516;201517;201518;201519;201520;201521;201522;201523;201524;201525;201526;201527;201528;201529;201530 201527 20 RPEIIAAIAEAR Unmodified 1308.7514 0.75138388 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 28.587 27.447 2;3 8.9367E-17 12931 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 210.95 187.53 4708700000 305520000 311800000 283720000 1096500 2066300 2349500 430580000 452820000 387070000 0 0 0 371870000 362830000 354590000 8724500 8974600 7403100 491820000 476980000 436720000 4734600 2276500 4729300 17766 288 17211 330286;330287;330288;330289;330290;330291;330292;330293;330294;330295;330296;330297;330298;330299;330300;330301;330302;330303;330304;330305;330306;330307;330308;330309;330310;330311;330312;330313;330314;330315;330316;330317;330318;330319;330320;330321;330322;330323;330324;330325 201531;201532;201533;201534;201535;201536;201537;201538;201539;201540;201541;201542;201543;201544;201545;201546;201547;201548;201549;201550;201551;201552;201553;201554;201555;201556;201557;201558;201559;201560;201561;201562;201563 201539 27 RPEITLVTNK Unmodified 1169.6768 0.67682195 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 17.39 17.86 2;3 1.4205E-06 6711 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 179.1 107.41 2373700000 184290000 205590000 184280000 7655600 6586500 6664400 207280000 194900000 191130000 32744000 33539000 29825000 144930000 139340000 129300000 4840700 3181000 2579200 218180000 218230000 194860000 11831000 11484000 10481000 17767 502 17212 330326;330327;330328;330329;330330;330331;330332;330333;330334;330335;330336;330337;330338;330339;330340;330341;330342;330343;330344;330345;330346;330347;330348;330349;330350;330351;330352;330353;330354;330355;330356;330357;330358;330359;330360;330361;330362;330363;330364;330365;330366;330367;330368;330369;330370;330371;330372 201564;201565;201566;201567;201568;201569;201570;201571;201572;201573;201574;201575;201576;201577;201578;201579;201580;201581;201582;201583;201584;201585;201586;201587;201588;201589;201590;201591;201592;201593;201594;201595;201596 201572 33 RPELLENLALTEEQAR Unmodified 1880.9956 0.99558991 403 P0A873 trmD tRNA (guanine-N(1)-)-methyltransferase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 1 1 2 2 2 2 2 2 36.401 34.877 2;3 2.2203E-13 16772 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 165.49 155.65 278190000 26586000 23005000 23449000 0 0 0 14449000 8571600 9688300 0 0 0 20259000 20717000 20840000 0 0 0 35709000 37201000 37716000 0 0 0 17768 403 17213 330373;330374;330375;330376;330377;330378;330379;330380;330381;330382;330383;330384;330385;330386;330387;330388;330389;330390;330391;330392;330393;330394 201597;201598;201599;201600;201601;201602;201603;201604 201601 4 RPEMAQR Unmodified 886.44432 0.4443196 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 6.6568 7.5227 2 0.0010301 1900 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.94 140.09 832990000 42241000 34759000 42096000 0 0 0 152870000 144570000 138400000 0 0 0 34472000 31893000 44659000 0 0 0 47302000 57664000 62062000 0 0 0 17769 1189 17214 330395;330396;330397;330398;330399;330400;330401;330402;330403;330404;330405;330406 201605;201606;201607;201608;201609;201610;201611;201612;201613;201614;201615;201616 201607 12 RPETEAVSMLLEQAR Unmodified 1728.8829 0.88286834 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 36.589 34.967 2;3 1.7423E-56 16843 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 304.42 272.93 1665600000 86648000 78717000 64646000 24308000 22230000 23507000 54273000 41774000 48772000 63875000 48024000 54825000 55988000 60176000 54105000 22455000 11283000 16594000 183820000 176920000 166430000 95955000 103510000 106780000 17770 215 17215 330407;330408;330409;330410;330411;330412;330413;330414;330415;330416;330417;330418;330419;330420;330421;330422;330423;330424;330425;330426;330427;330428;330429;330430;330431;330432;330433;330434;330435;330436;330437;330438;330439;330440;330441;330442;330443;330444;330445;330446;330447;330448;330449 201617;201618;201619;201620;201621;201622;201623;201624;201625;201626;201627;201628;201629;201630;201631;201632;201633;201634;201635;201636;201637;201638;201639;201640;201641;201642;201643;201644;201645;201646;201647;201648;201649;201650;201651;201652;201653;201654;201655;201656 201637 38 RPEVMGGLGGFGALCALPQK Unmodified 2057.055 0.055035819 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 42.553 40.749 2;3 6.431E-11 19942 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.54 125.96 590570000 160140000 141400000 123110000 4453800 3378300 3998300 3824700 6651700 7777100 1852100 1680500 2295300 21745000 19123000 16567000 0 0 0 28121000 22062000 22387000 0 0 0 17771 174 17216 330450;330451;330452;330453;330454;330455;330456;330457;330458;330459;330460;330461;330462;330463;330464;330465;330466;330467;330468;330469;330470;330471 201657;201658;201659;201660;201661;201662;201663;201664;201665;201666;201667;201668;201669 201661 12 RPFGITGK Unmodified 874.50249 0.5024864 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 12.83 13.641 2 0.023653 4124 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 66.351 9.1736 276140000 47319000 39900000 36295000 0 0 0 60496000 0 45661000 0 0 0 0 23782000 22683000 0 0 0 0 0 0 0 0 0 17772 427 17217 330472;330473;330474;330475;330476;330477;330478 201670;201671;201672 201672 3 RPFYQVVVADSR Unmodified 1435.7572 0.75719754 369 P0A7T3 rpsP 30S ribosomal protein S16 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 1 2 2 2 1 1 1 27.041 25.881 2;3 1.4338E-11 11672 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 184.36 161.04 275440000 45002000 42220000 36300000 0 0 0 13327000 11446000 15174000 0 0 396110 13688000 13297000 14322000 0 518220 0 22320000 21316000 22837000 1056900 1259500 959650 17773 369 17218 330479;330480;330481;330482;330483;330484;330485;330486;330487;330488;330489;330490;330491;330492;330493;330494;330495;330496;330497;330498;330499;330500;330501;330502;330503;330504;330505;330506;330507 201673;201674;201675;201676;201677;201678;201679 201678 7 RPGAEADYTEEEIAQAAER Unmodified 2104.9661 0.96614027 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.664 26.516 2;3 5.2583E-45 11912 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 272.95 265.49 996170000 152710000 135580000 127850000 0 0 0 78794000 74555000 74295000 0 0 0 50759000 50470000 54712000 0 0 0 65538000 54313000 76593000 0 0 0 17774 1244 17219 330508;330509;330510;330511;330512;330513;330514;330515;330516;330517;330518;330519;330520;330521;330522;330523;330524;330525;330526;330527;330528;330529;330530;330531 201680;201681;201682;201683;201684;201685;201686;201687;201688;201689;201690;201691;201692;201693;201694;201695;201696;201697 201693 18 RPGALQGEIAIAIPAHVR Unmodified 1868.0744 0.074449353 1320 P28632 holD DNA polymerase III subunit psi yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.001 29.626 3 0.00083036 13974 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 63.918 62.226 89758000 10436000 8850200 9299100 0 0 0 8652200 5148000 6091400 0 0 0 0 5139500 5924100 0 0 0 11283000 8949200 9985600 0 0 0 17775 1320 17220 330532;330533;330534;330535;330536;330537;330538;330539;330540;330541;330542 201698;201699 201698 2 RPIQDLEHEPIKPLDNSEK Unmodified 2257.1703 0.17025981 1479 P37642 yhjD Inner membrane protein YhjD yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 20 20.483 4 0.00011418 8336 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 66.636 63.627 102260000 13858000 14945000 8186400 0 0 0 20674000 0 0 0 0 0 6548900 6263100 4213800 0 0 0 11090000 5210500 11273000 0 0 0 17776 1479 17221 330543;330544;330545;330546;330547;330548;330549;330550;330551;330552 201700;201701 201700 2 RPKEPAILAEISGIVSFGK Unmodified 2011.1466 0.14661124 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 8 9 9 1 19 23 26 9 9 11 50.904 50.238 2;3;4 1.2451E-44 16836 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 301.43 295.92 47200000000 0 2273500 0 24155000 26245000 21551000 0 0 0 2841500000 2587700000 1803300000 0 0 1608000 8652100000 12339000000 8664300000 0 0 0 3276300000 3350400000 3610000000 17777 458 17222 330553;330554;330555;330556;330557;330558;330559;330560;330561;330562;330563;330564;330565;330566;330567;330568;330569;330570;330571;330572;330573;330574;330575;330576;330577;330578;330579;330580;330581;330582;330583;330584;330585;330586;330587;330588;330589;330590;330591;330592;330593;330594;330595;330596;330597;330598;330599;330600;330601;330602;330603;330604;330605;330606;330607;330608;330609;330610;330611;330612;330613;330614;330615;330616;330617;330618;330619;330620;330621;330622;330623;330624;330625;330626;330627;330628;330629;330630;330631;330632;330633;330634;330635;330636;330637;330638;330639;330640;330641;330642;330643;330644;330645;330646;330647;330648;330649;330650;330651;330652;330653;330654;330655;330656;330657;330658;330659;330660;330661;330662;330663;330664;330665;330666;330667;330668;330669;330670;330671;330672;330673;330674;330675;330676;330677;330678;330679;330680;330681;330682;330683 201702;201703;201704;201705;201706;201707;201708;201709;201710;201711;201712;201713;201714;201715;201716;201717;201718;201719;201720;201721;201722;201723;201724;201725;201726;201727;201728;201729;201730;201731;201732;201733;201734;201735;201736;201737;201738;201739;201740;201741;201742;201743;201744;201745;201746;201747;201748;201749;201750;201751;201752;201753;201754;201755;201756;201757;201758;201759;201760;201761;201762;201763;201764;201765;201766;201767;201768;201769;201770;201771;201772;201773;201774;201775;201776;201777;201778;201779;201780;201781;201782;201783;201784;201785;201786;201787;201788;201789;201790;201791;201792;201793;201794;201795;201796;201797;201798;201799;201800;201801;201802;201803;201804;201805;201806;201807;201808;201809;201810;201811;201812;201813;201814;201815;201816;201817;201818;201819;201820;201821;201822;201823;201824;201825;201826;201827;201828;201829;201830;201831;201832;201833;201834;201835;201836;201837;201838;201839;201840;201841;201842;201843;201844;201845;201846;201847;201848;201849;201850;201851;201852;201853;201854;201855;201856;201857;201858;201859;201860;201861;201862;201863 201736 159 RPLLCVPGK Unmodified 1038.6008 0.60082024 1235 P24178 yffB Protein YffB yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.117 18.715 2 0.0011302 7274 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.299 78.663 305410000 23765000 26214000 21023000 0 0 0 34762000 24318000 25171000 0 0 0 19482000 19471000 19394000 0 0 0 37449000 27705000 26655000 0 0 0 17778 1235 17223 330684;330685;330686;330687;330688;330689;330690;330691;330692;330693;330694;330695 201864;201865;201866;201867;201868;201869;201870;201871;201872 201864 9 RPLLCVPGKPMLLGFSDSSYQQFFHEV Unmodified 3151.5623 0.56233283 1235 P24178 yffB Protein YffB yes yes 0 0 2 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 52.256 51.02 3;4 3.3057E-23 24695 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 177.49 176.98 914840000 67536000 75585000 63788000 0 0 0 23176000 106910000 92470000 0 0 0 86366000 65989000 61060000 0 0 0 94833000 86940000 90194000 0 0 0 17779 1235 17224 330696;330697;330698;330699;330700;330701;330702;330703;330704;330705;330706;330707;330708;330709;330710;330711;330712;330713;330714;330715;330716;330717;330718 201873;201874;201875;201876;201877;201878;201879;201880;201881;201882;201883;201884;201885;201886;201887;201888 201879 16 RPLLHVETPPR Unmodified 1313.7568 0.75680361 233 P0A6D7 aroK Shikimate kinase 1 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.446 15.212 3 0.00046361 4983 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.397 77.913 471630000 55250000 81346000 73453000 0 0 0 34086000 35338000 26409000 0 0 0 26265000 21894000 24961000 0 0 0 28218000 32416000 31994000 0 0 0 17780 233 17225 330719;330720;330721;330722;330723;330724;330725;330726;330727;330728;330729;330730 201889;201890;201891;201892;201893;201894;201895 201892 7 RPLMGAIAEEFADVAVVTDDNPR Unmodified 2485.2271 0.22712276 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 51.619 50.459 3 0.078892 24698 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 36.677 32.867 17366000 0 5169900 0 0 0 0 0 0 0 0 0 0 2739000 1757100 3560100 0 0 0 0 4140300 0 0 0 0 17781 1192 17226 330731;330732;330733;330734;330735 201896 201896 0 RPLPTMDNMPIESR Unmodified 1655.8123 0.81234593 971 P0AFX9 rseB Sigma-E factor regulatory protein RseB yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.409 26.126 3 9.6329E-06 11879 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 70.26 65.545 145610000 16326000 15854000 4679400 0 0 0 9010300 8788900 7860500 854670 0 1156300 12510000 9441700 8241100 0 0 0 17016000 18303000 15572000 0 0 0 17782 971 17227 330736;330737;330738;330739;330740;330741;330742;330743;330744;330745;330746;330747;330748;330749 201897;201898;201899;201900;201901;201902;201903;201904 201899 2 RPLSSMSPTIVVK Unmodified 1413.8014 0.80137054 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 24.275 23.372 2;3 0.00096406 10083 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 90.108 46.8 243510000 24568000 22430000 23425000 0 0 0 27536000 26221000 27141000 0 0 0 11629000 3800700 12290000 0 0 0 21634000 26472000 16362000 0 0 0 17783 1155 17228 330750;330751;330752;330753;330754;330755;330756;330757;330758;330759;330760;330761;330762;330763;330764;330765;330766;330767;330768;330769;330770;330771;330772 201905;201906;201907;201908 201908 3 RPLSWVVGDQGVYR Unmodified 1630.858 0.85797422 927 P0AFC7 nuoB NADH-quinone oxidoreductase subunit B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 31.999 30.593 2;3 9.4777E-11 14624 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 164.53 156.46 1810100000 88053000 68123000 62219000 15334000 13547000 11743000 141240000 126220000 137310000 11628000 10450000 11312000 102660000 117390000 104740000 9784200 11001000 11141000 230250000 224880000 213380000 29497000 28133000 30099000 17784 927 17229 330773;330774;330775;330776;330777;330778;330779;330780;330781;330782;330783;330784;330785;330786;330787;330788;330789;330790;330791;330792;330793;330794;330795;330796;330797;330798;330799;330800;330801;330802;330803;330804;330805;330806;330807;330808;330809;330810;330811;330812;330813;330814 201909;201910;201911;201912;201913;201914;201915;201916;201917;201918;201919;201920;201921;201922;201923;201924;201925;201926;201927;201928;201929;201930;201931;201932;201933;201934;201935;201936;201937;201938;201939;201940;201941;201942;201943;201944;201945;201946;201947 201918 34 RPLTEDTLR Unmodified 1099.5986 0.59857163 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.117 13.983 2 0.0068897 4207 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 74.267 44.851 166120000 38246000 33097000 31179000 0 0 0 10032000 13823000 12685000 0 0 0 4286200 3703200 3922900 0 0 0 5059700 5439200 4647700 0 0 0 17785 1887 17230 330815;330816;330817;330818;330819;330820;330821;330822;330823;330824;330825;330826 201948 201948 1 RPLTFFCYGVGVLEGGELPDTHLGR Unmodified 2789.3959 0.39591943 1102 P15042 ligA DNA ligase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 48.949 48.291 4 1.052E-06 17475 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 95.366 94.467 116390000 0 0 0 0 0 1543800 0 0 0 0 0 0 0 0 0 19556000 19040000 17329000 36439000 0 22477000 0 0 0 17786 1102 17231 330827;330828;330829;330830;330831;330832 201949;201950;201951;201952;201953 201950 4 RPLVVMSPK Unmodified 1025.6056 0.60557126 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.801 16.382 2 1.9847E-05 5535 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.76 158.76 2558600000 197100000 187100000 171790000 3258100 3352400 3291400 105930000 107900000 120660000 0 4585500 4503100 213350000 195360000 164410000 3771600 2495100 2087300 345500000 342180000 320700000 22045000 19021000 18251000 17787 937 17232 330833;330834;330835;330836;330837;330838;330839;330840;330841;330842;330843;330844;330845;330846;330847;330848;330849;330850;330851;330852;330853;330854;330855 201954;201955;201956;201957;201958;201959;201960;201961;201962;201963;201964;201965;201966;201967;201968 201960 15 RPLWEFEIDTAR Unmodified 1531.7783 0.77832691 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.285 38.619 3 0.019746 18590 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 40.025 31.204 58706000 2571800 4512400 4059800 0 0 0 5314100 5397800 5897200 0 0 0 4151400 3516200 4003500 0 0 0 7100200 6239300 5942100 0 0 0 17788 1230 17233 330856;330857;330858;330859;330860;330861;330862;330863;330864;330865;330866;330867 201969 201969 0 RPMAVGTGSESAIAEALLAHLGLR Unmodified 2419.3006 0.30056248 1908 P77475 yqaB Fructose-1-phosphate phosphatase YqaB yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 2 1 2 1 1 2 2 2 52.637 51.344 3;4 4.8612E-15 24831 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.68 133 389220000 6805900 15263000 14965000 0 0 0 31476000 45080000 25262000 6385300 0 2126900 38154000 18903000 16638000 0 0 0 57409000 60564000 50189000 0 0 0 17789 1908 17234 330868;330869;330870;330871;330872;330873;330874;330875;330876;330877;330878;330879;330880;330881;330882;330883;330884;330885;330886;330887;330888;330889 201970;201971;201972;201973;201974;201975;201976;201977;201978;201979;201980;201981 201977 12 RPMPPVIVSYDTTLFNLSLPNNR Unmodified 2643.3843 0.38429211 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.342 51.094 3 1.1765E-06 24879 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.923 96.396 157840000 11810000 16401000 14615000 0 0 0 11385000 13332000 11471000 0 0 0 10517000 10739000 11008000 0 0 0 15988000 12715000 17856000 0 0 0 17790 1482 17235 330890;330891;330892;330893;330894;330895;330896;330897;330898;330899;330900;330901 201982;201983;201984;201985;201986 201982 3 RPNLFNWHMTQPDESILVSDGK Unmodified 2583.254 0.25400622 1637 P61316 lolA Outer-membrane lipoprotein carrier protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.196 39.53 3;4 1.3015E-28 19312 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 197.68 196.74 1150800000 89338000 82320000 87513000 0 0 0 102990000 103140000 102410000 0 0 0 83349000 88443000 85439000 0 0 0 108230000 116200000 101430000 0 0 0 17791 1637 17236 330902;330903;330904;330905;330906;330907;330908;330909;330910;330911;330912;330913;330914;330915;330916;330917;330918;330919;330920;330921;330922;330923;330924;330925 201987;201988;201989;201990;201991;201992;201993;201994;201995;201996;201997;201998;201999;202000 201991 13 RPPITVFDDFWK Unmodified 1519.7823 0.78234966 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 46.641 45.281 2;3 9.2616E-17 22006 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 215.56 192.92 1925300000 231680000 222060000 184780000 0 0 0 207160000 229980000 222470000 0 0 0 87254000 83325000 80096000 1233700 0 0 128090000 136850000 110310000 0 0 0 17792 1154 17237 330926;330927;330928;330929;330930;330931;330932;330933;330934;330935;330936;330937;330938;330939;330940;330941;330942;330943;330944;330945;330946;330947;330948;330949;330950 202001;202002;202003;202004;202005;202006;202007;202008;202009;202010;202011;202012;202013;202014;202015;202016;202017;202018;202019;202020;202021;202022;202023 202009 23 RPPLEER Unmodified 895.48756 0.48756462 1938 P77754 spy Spheroplast protein Y yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.727 11.561 2 0.0029758 2838 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.41 85.157 391600000 40799000 32607000 36206000 1819800 1591100 1791000 49613000 38131000 40715000 0 0 0 23717000 20447000 20042000 0 0 0 28359000 25671000 26439000 0 0 3655400 17793 1938 17238 330951;330952;330953;330954;330955;330956;330957;330958;330959;330960;330961;330962;330963;330964;330965;330966 202024;202025;202026;202027;202028;202029;202030;202031;202032;202033;202034;202035 202027 12 RPPSSDVDAIEAENFESGGALK Unmodified 2288.0921 0.092069069 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 2 2 1 1 2 31.694 30.789 2;3 9.2469E-35 10908 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 222.3 215.26 667440000 13478000 10178000 13645000 0 0 0 9622500 9633500 11549000 0 0 0 9907100 9965000 10134000 212060000 151770000 168930000 12681000 11058000 12832000 0 0 0 17794 1005 17239 330967;330968;330969;330970;330971;330972;330973;330974;330975;330976;330977;330978;330979;330980;330981;330982;330983;330984;330985 202036;202037;202038;202039;202040;202041 202037 6 RPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR Unmodified 4042.943 0.94296858 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 2 2 49.366 49.421 3;4 2.7921E-72 18197 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 258.32 256.88 513470000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 117060000 188580000 207830000 0 0 0 0 0 0 17795 1005 17240 330986;330987;330988;330989;330990;330991 202042;202043;202044;202045;202046;202047 202047 6 RPQVLDVPYLLSIQLDSFQK Unmodified 2358.2947 0.29473204 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 2 3 3 2 5 5 4 3 3 3 5 5 5 4 3 3 5 4 6 54.323 53.143 2;3;4 5.5694E-56 20196 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 338.23 336.29 59144000000 465300000 427360000 403230000 11981000 18044000 18366000 213770000 162640000 143010000 2149600000 2070700000 2628000000 352250000 268660000 321960000 8391900000 13949000000 15722000000 367930000 316090000 308960000 3362800000 3427000000 3644400000 17796 463 17241 330992;330993;330994;330995;330996;330997;330998;330999;331000;331001;331002;331003;331004;331005;331006;331007;331008;331009;331010;331011;331012;331013;331014;331015;331016;331017;331018;331019;331020;331021;331022;331023;331024;331025;331026;331027;331028;331029;331030;331031;331032;331033;331034;331035;331036;331037;331038;331039;331040;331041;331042;331043;331044;331045;331046;331047;331048;331049;331050;331051;331052;331053;331054;331055;331056;331057;331058;331059;331060;331061;331062;331063;331064;331065;331066;331067;331068;331069;331070;331071;331072;331073;331074;331075;331076 202048;202049;202050;202051;202052;202053;202054;202055;202056;202057;202058;202059;202060;202061;202062;202063;202064;202065;202066;202067;202068;202069;202070;202071;202072;202073;202074;202075;202076;202077;202078;202079;202080;202081;202082;202083;202084;202085;202086;202087;202088;202089;202090;202091;202092;202093;202094;202095;202096;202097;202098;202099;202100;202101;202102 202061 55 RPSLALTANSSTVNISELSAFTEK Unmodified 2535.318 0.31804626 1366 P31433 yicH Uncharacterized protein YicH yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.333 43.432 3 1.0959E-06 17747 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 100.08 92.636 34565000 0 0 0 1349100 1623500 1268400 5190000 5582600 4024300 3802800 4575300 3998600 0 1798800 0 0 0 0 0 0 0 0 1351300 0 17797 1366 17242 331077;331078;331079;331080;331081;331082;331083;331084;331085;331086;331087 202103;202104;202105 202103 3 RPSLSPDDAGCQALLIER Unmodified 1997 2.33601E-05 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 31.871 30.629 3 5.6839E-10 13762 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 125.73 120.41 283040000 29138000 21549000 20992000 0 0 0 0 0 23595000 0 0 0 21486000 21439000 20670000 0 0 0 45412000 38890000 39870000 0 0 0 17798 849 17243 331088;331089;331090;331091;331092;331093;331094;331095;331096;331097 202106;202107;202108;202109;202110;202111;202112;202113;202114;202115 202115 10 RPSLWVEPR Unmodified 1138.6247 0.6247268 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 22.055 21.964 2;3 0.0009013 9089 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 117.81 108.43 278520000 21067000 19892000 19069000 0 0 0 29250000 25780000 22099000 0 0 0 20180000 16724000 18482000 0 0 0 30428000 29753000 25791000 0 0 0 17799 1548 17244 331098;331099;331100;331101;331102;331103;331104;331105;331106;331107;331108;331109;331110;331111;331112;331113;331114;331115;331116;331117;331118;331119;331120;331121 202116;202117;202118;202119;202120;202121;202122;202123;202124;202125;202126;202127 202120 12 RPTGGVESLR Unmodified 1070.5833 0.58325592 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 1 2 1 2 2 11.811 12.632 2;3 0.00059688 3267 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 100.58 63.883 626240000 103690000 84139000 85729000 0 0 0 60164000 52579000 58305000 0 0 0 31290000 21586000 26904000 0 0 0 29614000 36836000 35402000 0 0 0 17800 43 17245 331122;331123;331124;331125;331126;331127;331128;331129;331130;331131;331132;331133;331134;331135;331136;331137;331138;331139;331140;331141;331142;331143 202128;202129;202130;202131;202132;202133;202134;202135;202136 202136 9 RPTGMLTNSNMEEMTK Unmodified 1838.8325 0.83248903 854 P0AEF0 dnaC DNA replication protein DnaC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 21.555 21.828 2;3 8.8378E-10 8653 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.27 123.69 21560000 3680900 5015100 4432600 0 0 0 8431800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17801 854 17246 331144;331145;331146;331147;331148;331149 202137;202138;202139;202140 202140 4 RPTRPADFDAR Unmodified 1300.6636 0.6636315 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 1 1 1 2 2 2 2 2 1 11.55 12.198 2;3 1.1424E-25 3168 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 249.24 227.77 3214000000 305020000 270350000 307460000 9975800 7563100 7604200 298550000 269390000 243040000 14082000 21368000 13785000 238790000 180800000 217000000 4819800 5586700 8357000 280530000 243060000 237500000 11456000 10726000 7220600 17802 62 17247 331150;331151;331152;331153;331154;331155;331156;331157;331158;331159;331160;331161;331162;331163;331164;331165;331166;331167;331168;331169;331170;331171;331172;331173;331174;331175;331176;331177;331178;331179;331180;331181;331182;331183;331184;331185;331186;331187;331188 202141;202142;202143;202144;202145;202146;202147;202148;202149;202150;202151;202152;202153;202154;202155;202156;202157;202158;202159;202160;202161;202162;202163;202164;202165;202166;202167 202148 27 RPTTLGLGDGPNDAPLLEVMDYAVIVK Unmodified 2853.4946 0.49463042 1851 P76329 yedP Putative mannosyl-3-phosphoglycerate phosphatase yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 54.883 53.477 3 1.3156E-11 26563 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.28 126.05 129800000 47275000 45894000 36632000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17803 1851 17248 331189;331190;331191 202168;202169 202168 2 RPVLYLGGGVINAPAR Unmodified 1651.9522 0.95220895 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 1 By MS/MS By MS/MS 1 1 32.618 31.363 2 3.6544E-18 14810 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 183.85 166.04 50272000 31469000 0 18803000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17804 173 17249 331192;331193 202170;202171 202171 2 RPVSSDDVEMAINHIK Unmodified 1809.9043 0.90433206 419 P0A8D0 nrdR Transcriptional repressor NrdR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 1 1 2 3 3 2 2 2 1 1 3 1 2 1 27.284 26.148 3;4 6.313E-09 11304 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 87.808 77.886 595130000 110150000 13794000 9034300 0 0 0 58537000 64198000 62766000 0 0 0 43833000 54998000 46365000 0 728240 856250 63591000 8749200 56026000 1502200 0 0 17805 419 17250 331194;331195;331196;331197;331198;331199;331200;331201;331202;331203;331204;331205;331206;331207;331208;331209;331210;331211;331212;331213;331214;331215;331216;331217;331218;331219;331220 202172;202173;202174;202175;202176;202177;202178;202179;202180 202180 9 RPVTGNNR Unmodified 912.48896 0.4889616 356 P0A7M2 rpmB 50S ribosomal protein L28 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.5768 7.1874 2 1.4709E-05 961 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 178.65 178.65 2950600000 350850000 340820000 294690000 16771000 17744000 16674000 143120000 153740000 141050000 11345000 12124000 13463000 181720000 134960000 161500000 19955000 13054000 10925000 310880000 286190000 283470000 16777000 18706000 72964 17806 356 17251 331221;331222;331223;331224;331225;331226;331227;331228;331229;331230;331231;331232;331233;331234;331235;331236;331237;331238;331239;331240;331241;331242;331243;331244 202181;202182;202183;202184;202185;202186;202187;202188;202189;202190;202191;202192;202193;202194;202195;202196;202197;202198;202199;202200 202190 20 RPVVPGDQMIMEVTFEK Unmodified 1974.9907 0.99070423 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.245 39.887 3 7.573E-05 19484 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 76.378 72.884 172380000 12119000 8318100 8476600 0 0 647740 12885000 16578000 8212900 0 0 0 12276000 16818000 13618000 2603900 2145400 2046800 15023000 19900000 20715000 0 0 0 17807 272 17252 331245;331246;331247;331248;331249;331250;331251;331252;331253;331254;331255;331256;331257;331258;331259;331260 202201;202202;202203 202203 3 RPYSVILLDEVEK Unmodified 1559.8559 0.85590853 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 36.632 34.972 2;3 9.3127E-09 16691 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 168.02 152.87 531310000 62852000 53664000 57764000 606800 0 0 55352000 63797000 69680000 2210200 1554900 0 25863000 24654000 22169000 0 0 0 33142000 28358000 29646000 0 0 0 17808 1662 17253 331261;331262;331263;331264;331265;331266;331267;331268;331269;331270;331271;331272;331273;331274;331275;331276;331277;331278;331279;331280;331281;331282;331283;331284;331285;331286;331287 202204;202205;202206;202207;202208;202209;202210;202211;202212;202213;202214;202215;202216;202217;202218;202219;202220;202221;202222 202211 19 RQANELPGAPSQEEAVIAFGK Unmodified 2211.1284 0.128395 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.128 32.68 3 3.3223E-10 10855 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 114.55 110.3 277520000 30484000 28629000 30244000 0 3969100 3119700 17316000 12286000 13552000 6350400 4909000 3883800 11127000 12783000 11348000 15777000 10598000 12612000 10378000 12504000 20933000 2971800 1747000 0 17809 570 17254 331288;331289;331290;331291;331292;331293;331294;331295;331296;331297;331298;331299;331300;331301;331302;331303;331304;331305;331306;331307;331308;331309 202223;202224;202225;202226;202227;202228;202229;202230;202231;202232;202233;202234 202225 12 RQAVTNPQNTLFAIK Unmodified 1699.937 0.93695282 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By matching By matching By matching By MS/MS 1 1 1 1 28.669 26.907 2 0.024023 10019 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 51.841 42.154 6733100 0 0 0 700170 0 0 0 0 2509700 0 1479200 2044000 0 0 0 0 0 0 0 0 0 0 0 0 17810 293 17255 331310;331311;331312;331313 202235 202235 1 RQDCIAHGR Unmodified 1111.5305 0.53050884 32 P00547 thrB Homoserine kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 5.6732 6.5079 2;3 8.8526E-05 1167 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.7 133.79 98829000 28622000 18687000 20404000 0 0 0 2698100 0 0 0 0 0 5489500 3013700 3639000 0 0 0 6938900 5515100 3821800 0 0 0 17811 32 17256 331314;331315;331316;331317;331318;331319;331320;331321;331322;331323;331324 202236;202237;202238;202239;202240;202241;202242;202243;202244 202236 9 RQDIESNLQYDAGDK Unmodified 1750.8122 0.81220581 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 19.082 19.647 2;3 4.819E-28 7082 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 274.92 266.19 3185800000 233310000 197280000 192600000 0 0 0 310590000 296530000 257950000 0 0 0 256540000 242020000 213180000 0 0 0 324840000 348540000 312420000 0 0 0 17812 1137 17257 331325;331326;331327;331328;331329;331330;331331;331332;331333;331334;331335;331336;331337;331338;331339;331340;331341;331342;331343;331344;331345;331346;331347;331348 202245;202246;202247;202248;202249;202250;202251;202252;202253;202254;202255;202256;202257;202258;202259;202260;202261;202262;202263;202264;202265;202266 202266 22 RQDLVYEKEDLLISGPGK Unmodified 2059.095 0.094969603 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.598 28.045 3 0.00012608 13072 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 69.763 65.959 113860000 3913000 0 0 1238200 1275800 0 10178000 9420900 6236400 4183100 6531800 5422700 6215500 6525300 6604900 0 0 0 14257000 11181000 9025700 4863500 3955300 2836700 17813 930 17258 331349;331350;331351;331352;331353;331354;331355;331356;331357;331358;331359;331360;331361;331362;331363;331364;331365;331366 202267;202268;202269;202270 202269 4 RQEEVAK Unmodified 858.45593 0.45593014 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 9.8461 9.9797 2 0.0044748 1697 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 107.43 78.091 25435000 0 0 0 0 0 0 0 0 0 4768000 4322300 4493400 0 0 0 934990 1117000 897640 0 0 0 3017000 2688100 3197200 17814 975 17259 331367;331368;331369;331370;331371;331372;331373;331374;331375 202271;202272;202273 202271 3 RQELLAQLGVTFER Unmodified 1658.9104 0.91040372 1261 P25536 yhdE Maf-like protein YhdE yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 40.726 39.104 3 3.6819E-05 19069 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.566 85.004 59137000 5252100 4878600 4494400 0 0 0 4840400 0 4679500 0 0 0 4663500 4600500 3356600 0 0 0 7582900 7502600 7285600 0 0 0 17815 1261 17260 331376;331377;331378;331379;331380;331381;331382;331383;331384;331385;331386 202274;202275;202276 202275 3 RQEVTTEGGLDVAGQR Unmodified 1714.8598 0.85982471 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 2 1 1 2 2 2 2 2 2 16.641 17.361 2;3 3.5575E-07 6110 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.92 101.49 158840000 11860000 10243000 11254000 0 0 0 19070000 14146000 9221900 698820 0 0 12955000 12653000 13624000 0 0 0 15873000 13976000 13263000 0 0 0 17816 319 17261 331387;331388;331389;331390;331391;331392;331393;331394;331395;331396;331397;331398;331399;331400;331401;331402;331403;331404;331405;331406;331407;331408;331409;331410 202277;202278;202279;202280;202281;202282;202283 202280 4 RQEVVAPEDAWR Unmodified 1454.7266 0.72662569 206 P09155 rnd Ribonuclease D yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 21.671 21.684 3 0.02568 8321 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 42.785 31.465 67094000 6443200 6285300 4833000 0 0 0 5680800 7280900 8825400 0 0 0 0 0 6825900 0 0 0 0 9638800 11280000 0 0 0 17817 206 17262 331411;331412;331413;331414;331415;331416;331417;331418;331419 202284;202285 202285 0 RQLAYPINK Unmodified 1101.6295 0.62947783 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 3 2 2 3 3 3 14.411 14.989 2;3 2.021E-05 4805 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 158.36 130.14 467250000 67081000 58722000 53661000 7531700 8747200 11640000 17309000 13307000 15274000 13345000 13707000 10677000 15917000 14546000 12656000 5667700 5085600 3134900 30653000 32452000 34019000 7309000 7614300 7191100 17818 66 17263 331420;331421;331422;331423;331424;331425;331426;331427;331428;331429;331430;331431;331432;331433;331434;331435;331436;331437;331438;331439;331440;331441;331442;331443;331444;331445;331446;331447;331448;331449;331450;331451;331452;331453;331454;331455;331456;331457;331458;331459;331460;331461;331462 202286;202287;202288;202289;202290;202291;202292;202293;202294;202295;202296;202297;202298;202299;202300;202301;202302;202303;202304;202305;202306;202307 202304 22 RQLDSGKLDEAMAR Unmodified 1588.7991 0.79913871 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.256 15.678 3 0.0028123 3841 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 54.556 53.19 36158000 0 0 0 5866200 4381700 4446000 0 0 0 3689300 4033900 4194700 0 0 0 0 0 0 0 0 0 3747000 2904700 2894400 17819 956 17264 331463;331464;331465;331466;331467;331468;331469;331470;331471 202308;202309 202308 2 RQLLDEVQSICPPHVTIMQVR Unmodified 2518.3148 0.31483233 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 41.351 39.806 4 0.075382 19927 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 33.074 30.35 92246000 5242500 7500500 6449700 0 0 0 8582000 6365100 8463600 0 0 0 7510800 5719000 6244700 1536800 0 0 9404100 9891900 9335900 0 0 0 17820 876 17265 331472;331473;331474;331475;331476;331477;331478;331479;331480;331481;331482;331483;331484 202310 202310 0 RQPAVAESVVAQIK Unmodified 1494.8518 0.85182621 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.578 22.857 2 2.0118E-06 9853 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.01 116.8 81557000 6543400 6489600 6076100 0 0 0 9594200 10217000 8249400 0 0 0 4183400 5665200 3723000 0 0 0 7814500 5150200 7851600 0 0 0 17821 45 17266 331485;331486;331487;331488;331489;331490;331491;331492;331493;331494;331495;331496 202311;202312 202312 2 RQPDFSK Unmodified 876.44537 0.44536545 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.633 11.396 2 0.0022488 2187 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 123.69 106.73 319280000 23353000 24382000 22044000 0 0 0 28393000 33187000 35061000 0 0 0 0 22996000 23596000 0 0 0 27469000 28821000 33860000 0 16120000 0 17822 679 17267 331497;331498;331499;331500;331501;331502;331503;331504;331505;331506;331507;331508 202313;202314 202314 2 RQPDLTVCMEQVHKPHNVSAIIR Unmodified 2727.4061 0.40610696 1021 P0AGJ2 trmH tRNA (guanosine(18)-2'-O)-methyltransferase yes yes 0 0 2 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.071 23.46 5 0.0025209 7044 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 57.39 55.067 67661000 10101000 10092000 10125000 0 0 0 0 0 0 0 0 0 0 3964700 0 0 5105600 4111200 8000800 10377000 5783100 0 0 0 17823 1021 17268 331509;331510;331511;331512;331513;331514;331515;331516;331517 202315;202316;202317 202315 3 RQPFVASTLLGATTMDQLK Unmodified 2076.1038 0.10376015 556 P0A9T4 tas Protein tas yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 42.66 40.969 3 9.4634E-11 19296 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 132.51 123.46 417000000 31966000 35105000 37673000 0 0 714010 47289000 43025000 40080000 0 0 0 27209000 26777000 29961000 0 0 0 32823000 33784000 30594000 0 0 0 17824 556 17269 331518;331519;331520;331521;331522;331523;331524;331525;331526;331527;331528;331529;331530 202318;202319;202320;202321;202322;202323;202324;202325;202326;202327;202328 202326 11 RQPLLQIDEEK Unmodified 1367.7409 0.74087877 113 P05637 apaH Bis(5'-nucleosyl)-tetraphosphatase [symmetrical] yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 19.99 20.447 2 5.7725E-06 7933 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 152.97 100.69 36395000 5758600 0 9008200 0 0 0 0 2563800 5157900 0 0 0 3778900 0 2687600 0 0 0 4373500 3066400 0 0 0 0 17825 113 17270 331531;331532;331533;331534;331535;331536;331537;331538 202329;202330;202331 202330 3 RQPLLQIDEEKK Unmodified 1495.8358 0.83584179 113 P05637 apaH Bis(5'-nucleosyl)-tetraphosphatase [symmetrical] yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 14.732 15.499 3 0.00081111 5199 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 72.958 65.667 86314000 5761400 8026800 5954900 0 0 0 8249800 9071200 7105700 0 0 0 6983900 7022000 6202600 0 0 0 12666000 9269100 0 0 0 0 17826 113 17271 331539;331540;331541;331542;331543;331544;331545;331546;331547;331548;331549 202332;202333 202332 2 RQPRPAK Unmodified 851.50897 0.50896876 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 9.3883 9.3435 2 0.014641 1598 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 107.49 87.146 89051000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 46924000 14179000 27948000 0 0 0 0 0 0 17827 729 17272 331550;331551;331552 202334;202335;202336 202335 3 RQPSEQELR Unmodified 1141.584 0.5839842 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 1 2 1 10.713 11.5 2;3 9.4735E-05 2806 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.89 117.89 613580000 186570000 176920000 162920000 0 0 0 15822000 6740300 13056000 0 0 0 0 11914000 0 0 0 0 12845000 16389000 10405000 0 0 0 17828 1111 17273 331553;331554;331555;331556;331557;331558;331559;331560;331561;331562;331563;331564;331565;331566;331567;331568;331569 202337;202338;202339;202340;202341;202342 202337 6 RQPTASDLR Unmodified 1042.552 0.55195579 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.301 11.908 2 5.4652E-22 3009 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 253.05 151.36 2052800000 29909000 18716000 24775000 2907600 2971600 2387800 193890000 185050000 191610000 29759000 26609000 24567000 143260000 145990000 149270000 6441800 4935000 3858200 291560000 257610000 256630000 17872000 18301000 23925000 17829 531 17274 331570;331571;331572;331573;331574;331575;331576;331577;331578;331579;331580;331581;331582;331583;331584;331585;331586;331587;331588;331589;331590;331591;331592;331593 202343;202344;202345;202346;202347;202348;202349;202350;202351;202352;202353 202347 11 RQPVASFEQALDWLVK Unmodified 1886.005 0.0050323835 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 2 3 1 1 1 2 2 2 2 2 2 52.91 51.609 2;3 1.4784E-13 20763 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 185.27 176.75 2003200000 117190000 101230000 82141000 8382800 6546700 10391000 136030000 119980000 134300000 73609000 51847000 68162000 136740000 118550000 109950000 16216000 19008000 26287000 176100000 181600000 209240000 34123000 29889000 35647000 17830 883 17275 331594;331595;331596;331597;331598;331599;331600;331601;331602;331603;331604;331605;331606;331607;331608;331609;331610;331611;331612;331613;331614;331615;331616;331617;331618;331619;331620;331621;331622;331623;331624;331625;331626;331627;331628;331629;331630;331631;331632;331633 202354;202355;202356;202357;202358;202359;202360;202361;202362;202363;202364;202365;202366;202367;202368;202369;202370;202371;202372;202373;202374;202375;202376;202377;202378;202379;202380;202381;202382;202383;202384;202385;202386;202387 202362 34 RQQAEASTR Unmodified 1045.5265 0.52646932 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 1 By MS/MS By MS/MS 1 1 5.4185 6.1698 2 0.0010358 1255 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.21 70.185 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17831 345 17276 331634;331635 202388;202389 202389 2 RQVIQLTPQEDESTLK Unmodified 1883.9953 0.99525556 1212 P23827 eco Ecotin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 24.919 23.845 2;3 3.9771E-18 10910 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 218.5 185.44 835770000 76325000 71091000 65847000 0 0 0 89538000 88299000 84764000 2029900 1994800 1037400 55051000 48335000 42534000 0 0 0 72513000 69423000 66991000 0 0 0 17832 1212 17277 331636;331637;331638;331639;331640;331641;331642;331643;331644;331645;331646;331647;331648;331649;331650;331651;331652;331653;331654;331655;331656;331657;331658;331659;331660;331661;331662 202390;202391;202392;202393;202394;202395;202396;202397;202398;202399;202400;202401;202402;202403;202404;202405;202406;202407;202408;202409;202410;202411 202391 22 RQVNNLR Unmodified 898.5097 0.50969704 461 P0A8U6 metJ Met repressor yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 10.066 10.859 2 0.013444 2329 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 86.512 26.903 18396000 6057100 3737100 1688900 0 0 0 0 0 0 0 0 0 4505200 0 2407300 0 0 0 0 0 0 0 0 0 17833 461 17278 331663;331664;331665;331666;331667 202412;202413 202413 2 RRDDTAVPLLAPNQDIYLR Unmodified 2225.1917 0.19166396 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 1 2 1 1 2 2 2 1 1 1 1 2 1 1 2 37.35 35.383 3;4 0.0020474 12453 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 58.997 45.767 131310000 0 2775200 0 5979500 5881800 3332600 11907000 6419100 4899900 17884000 16871000 14971000 2267100 2341900 4621200 0 0 0 0 6669600 12279000 2168600 3670900 6373500 17834 201 17279 331668;331669;331670;331671;331672;331673;331674;331675;331676;331677;331678;331679;331680;331681;331682;331683;331684;331685;331686;331687;331688;331689;331690;331691;331692;331693 202414;202415 202415 2 RRPGTSR Unmodified 828.46783 0.46783223 1075 P12008 aroC Chorismate synthase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 3.9204 4.8749 2 0.024419 764 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 97.596 52.623 24323000 0 0 0 114340 114490 94706 0 0 0 0 0 0 2604100 3161100 2176200 0 0 0 5259800 5668400 5130100 0 0 0 17835 1075 17280 331694;331695;331696;331697;331698;331699;331700;331701;331702 202416 202416 1 RRPLWEFEIDTAR Unmodified 1687.8794 0.87943794 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.955 31.382 3 3.3482E-05 14703 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 84.753 83.174 100770000 8349500 4302000 6875800 888090 855410 570680 12027000 0 11719000 0 1276400 1916300 6235700 6595800 0 0 0 0 10701000 13390000 13433000 0 954570 681150 17836 1230 17281 331703;331704;331705;331706;331707;331708;331709;331710;331711;331712;331713;331714;331715;331716;331717;331718;331719 202417;202418;202419;202420;202421 202419 4 RRPPITVFDDFWK Unmodified 1675.8835 0.88346068 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 39.442 37.711 4 0.00019709 18741 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.595 54.423 51078000 5745000 6486400 4840300 0 0 0 7862300 6533000 5310600 0 0 0 2371000 0 0 0 0 0 5396600 6532500 0 0 0 0 17837 1154 17282 331720;331721;331722;331723;331724;331725;331726;331727;331728 202422;202423 202423 2 RRPQFSK Unmodified 917.51953 0.51953345 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 2 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 10.395 10.575 2 0.070336 1931 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.098 67.837 94712000 0 0 0 0 0 0 0 0 0 24056000 23341000 17505000 0 0 0 8547300 0 0 0 0 0 0 10788000 10474000 17838 378 17283 331729;331730;331731;331732;331733;331734 202424 202424 1 RRPTGGVESLR Unmodified 1226.6844 0.68436695 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 11.085 11.768 2;3 1.1599E-07 2978 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.12 97.799 1372300000 237850000 234140000 237020000 0 0 0 204190000 216640000 241980000 0 0 510860 0 0 0 0 0 0 0 0 0 0 0 0 17839 43 17284 331735;331736;331737;331738;331739;331740;331741;331742;331743;331744 202425;202426;202427;202428;202429;202430;202431;202432 202432 8 RRPYSVILLDEVEK Unmodified 1715.957 0.95701956 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.743 29.17 3 4.2754E-07 13797 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.08 121.7 446400000 51679000 36778000 44860000 3731400 0 2754900 51869000 58489000 47276000 3216300 5015300 4630700 15242000 17606000 18711000 0 0 0 27529000 30094000 24612000 0 2305600 0 17840 1662 17285 331745;331746;331747;331748;331749;331750;331751;331752;331753;331754;331755;331756;331757;331758;331759;331760;331761;331762 202433;202434;202435;202436;202437;202438;202439;202440;202441;202442;202443 202437 11 RRYPFLTESLAR Unmodified 1507.8259 0.82594581 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 2 2 2 24.022 23.083 3;4 3.265E-05 8600 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.014 75.124 191700000 0 0 0 9224800 10481000 11185000 0 0 0 40946000 36181000 35793000 0 0 0 3782300 3710900 4232000 0 0 0 11903000 11388000 12871000 17841 1088 17286 331763;331764;331765;331766;331767;331768;331769;331770;331771;331772;331773;331774;331775;331776;331777;331778;331779;331780;331781;331782;331783;331784 202444;202445;202446;202447;202448;202449;202450;202451 202446 8 RSDAEPHYLPQLR Unmodified 1580.8059 0.80593865 306 P0A734 minE Cell division topological specificity factor yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 1 1 1 2 1 2 2 2 2 20.401 20.677 2;3 6.339E-06 8498 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 97.551 95.494 745230000 77471000 75100000 53093000 0 0 0 57465000 45312000 48147000 5479400 3678800 4010200 57545000 42680000 53829000 0 0 0 70099000 71790000 79525000 0 0 0 17842 306 17287 331785;331786;331787;331788;331789;331790;331791;331792;331793;331794;331795;331796;331797;331798;331799;331800;331801;331802;331803;331804;331805;331806;331807 202452;202453;202454;202455;202456;202457;202458;202459;202460;202461;202462;202463 202455 11 RSDVIEIR Unmodified 986.55089 0.55089316 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 14.91 15.695 2 0.00060383 5341 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 136.57 66.568 1152300000 87175000 106100000 73865000 0 0 0 120720000 135670000 121320000 0 0 0 107620000 90381000 85450000 0 0 0 116880000 107090000 0 0 0 0 17843 771 17288 331808;331809;331810;331811;331812;331813;331814;331815;331816;331817;331818 202464;202465;202466 202465 3 RSDVPYK Unmodified 863.45012 0.45011648 316 P0A780 nusB N utilization substance protein B yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.835 11.365 2 0.043897 2614 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 65.777 29.221 168780000 11626000 0 15613000 2607200 3517800 2161400 8915900 0 0 6603700 8081100 6213500 36639000 0 0 0 3795600 3360200 0 0 55565000 1982000 0 2098700 17844 316 17289 331819;331820;331821;331822;331823;331824;331825;331826;331827;331828;331829;331830;331831;331832;331833;331834 202467;202468;202469;202470 202470 4 RSHDALTAVTSLSVDK Unmodified 1698.8901 0.89006221 359 P0A7N4 rpmF 50S ribosomal protein L32 yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 2 2 2 2 2 2 2 2 1 1 2 2 1 2 2 2 2 2 2 2 2 2 24.094 23.251 3;4 4.0246E-07 8286 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 84.375 83.686 654580000 34419000 73469000 53294000 5499800 6418600 7701900 39524000 37785000 31943000 13963000 0 10542000 47866000 32963000 17210000 13118000 11775000 10985000 59684000 67955000 43536000 11231000 10793000 12910000 17845 359 17290 331835;331836;331837;331838;331839;331840;331841;331842;331843;331844;331845;331846;331847;331848;331849;331850;331851;331852;331853;331854;331855;331856;331857;331858;331859;331860;331861;331862;331863;331864;331865;331866;331867;331868;331869;331870;331871;331872;331873;331874;331875;331876 202471;202472;202473;202474;202475;202476;202477;202478;202479;202480 202476 8 RSPAIEEWLR Unmodified 1255.6673 0.6673199 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 29.843 28.553 2;3 4.3012E-13 13582 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 185.08 158.64 786380000 198870000 217700000 176480000 0 0 0 25385000 26075000 26659000 0 0 0 11641000 14564000 12203000 0 0 0 22784000 25344000 28681000 0 0 0 17846 703 17291 331877;331878;331879;331880;331881;331882;331883;331884;331885;331886;331887;331888;331889;331890;331891;331892;331893;331894;331895;331896;331897;331898;331899;331900 202481;202482;202483;202484;202485;202486;202487;202488;202489;202490;202491;202492;202493;202494;202495;202496;202497 202486 17 RSPQAQQHLQQLLR Unmodified 1701.9387 0.93868415 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.483 17.246 3 0.088695 6148 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 34.326 33.425 46933000 4403100 5931000 6146600 0 0 0 7755500 5050500 6727000 0 0 0 2110800 2258800 0 0 0 0 4047300 2502100 0 0 0 0 17847 1926 17292 331901;331902;331903;331904;331905;331906;331907;331908;331909;331910 202498;202499;202500 202499 0 RSQAIPR Unmodified 826.47733 0.47733428 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 9.5158 10.27 2 0.019312 2273 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 81.784 51.115 6227200 0 0 0 0 0 0 2360300 1697600 2169300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17848 1194 17293 331911;331912;331913 202501;202502 202502 2 RSQILDEAK Unmodified 1058.572 0.57202253 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.171 12.756 2 0.0018056 2996 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 98.033 23.906 362750000 6830900 7676700 7387400 0 0 4539500 31750000 31206000 27405000 16532000 14395000 13677000 29759000 4218600 24713000 4973600 3373100 3276900 36419000 40237000 37520000 7874700 0 8985900 17849 642 17294 331914;331915;331916;331917;331918;331919;331920;331921;331922;331923;331924;331925;331926;331927;331928;331929;331930;331931;331932;331933;331934 202503;202504 202503 2 RSQILDEAKAEAEQER Unmodified 1871.9337 0.93371793 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 2 1 2 2 2 20.197 20.139 3;4 1.2744E-08 6475 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 124.68 120.84 111450000 0 0 0 6066800 4161600 3605500 0 0 0 18411000 17563000 14715000 0 0 0 4324000 3255400 2175800 0 0 0 14040000 12185000 10944000 17850 642 17295 331935;331936;331937;331938;331939;331940;331941;331942;331943;331944;331945;331946;331947;331948;331949;331950;331951;331952;331953;331954 202505;202506;202507;202508;202509;202510;202511;202512;202513;202514 202509 10 RSSEVYGQTNIGGK Unmodified 1494.7427 0.74266969 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 1 2 2 2 12.353 13.185 2;3 9.2717E-35 3710 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 256.95 222.14 2531000000 46589000 40614000 40900000 842390 1107000 1769100 357840000 333240000 298600000 0 1278500 0 301110000 241650000 111780000 0 0 0 292420000 234710000 226600000 0 0 0 17851 239 17296 331955;331956;331957;331958;331959;331960;331961;331962;331963;331964;331965;331966;331967;331968;331969;331970;331971;331972;331973;331974;331975;331976;331977;331978;331979;331980;331981 202515;202516;202517;202518;202519;202520;202521;202522;202523;202524;202525;202526;202527;202528;202529;202530 202518 15 RSTGDVK Unmodified 761.40317 0.40316629 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 8.9834 9.177 2 0.14542 1474 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 50.966 34.039 14383000 0 0 827340 0 0 0 0 0 0 3349100 1892400 0 0 0 0 533690 360470 357370 0 0 0 3063800 2139000 1859300 17852 1408 17297 331982;331983;331984;331985;331986;331987;331988;331989;331990 202531 202531 1 RSTIFPNMIGLTIAVHNGR Unmodified 2096.1313 0.1313123 371 P0A7U3 rpsS 30S ribosomal protein S19 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 2 2 2 2 41.403 39.313 3;4 0.0041414 16145 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 50.404 45.877 58610000 0 0 0 4059700 4426600 3944700 0 0 0 8330200 6434800 8899500 0 0 0 0 0 0 0 0 0 7640500 8044300 6829400 17853 371 17298 331991;331992;331993;331994;331995;331996;331997;331998;331999;332000;332001;332002;332003;332004 202532;202533;202534;202535;202536;202537;202538 202532 7 RSVAIALR Unmodified 884.55558 0.55558461 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.138 15.452 2 0.004115 4270 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 93.429 22.086 38513000 0 0 0 2305000 2359700 0 0 0 0 5029500 4260900 5437400 0 0 0 2408900 1080400 993330 0 4444800 0 3273000 3202700 3717100 17854 245 17299 332005;332006;332007;332008;332009;332010;332011;332012;332013;332014;332015;332016 202539;202540;202541 202540 3 RSVMTLFSGPTDIYSHQVR Unmodified 2193.1001 0.10007176 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 1 By MS/MS 1 33.298 33.298 3 0.082795 11855 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 38.736 34.468 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17855 712 17300 332017 202542 202542 1 RSVNIFDK Unmodified 977.52943 0.52942943 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.859 16.673 2 0.15422 5416 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 44.349 23.794 59834000 4433400 0 0 0 0 0 6728200 7144400 6949200 0 0 0 6016600 4297300 0 0 0 0 8753900 7805800 7705600 0 0 0 17856 1137 17301 332018;332019;332020;332021;332022;332023;332024;332025;332026 202543 202543 1 RSVNMEPK Unmodified 959.48585 0.48585006 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 1 By MS/MS 1 10.986 11.24 2 0.065704 2201 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 58.917 43.478 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17857 698 17302 332027 202544 202544 1 RTADMIPPLLFPR Unmodified 1525.8439 0.84390406 1085 P13024 fdhE Protein FdhE yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 45.414 44.007 3 0.00042447 21571 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 56.122 51.417 28104000 3909400 0 4106500 0 0 0 1925300 0 2602800 0 0 0 2617300 2160100 3487700 0 0 0 0 3333700 3961100 0 0 0 17858 1085 17303 332028;332029;332030;332031;332032;332033;332034;332035;332036 202545 202545 1 RTAEICEHLK Unmodified 1255.6343 0.63430521 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 11.68 12.326 2;3 0.00028115 3046 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 139.38 126.85 1840300000 21564000 20941000 22717000 0 0 0 259730000 220820000 218530000 10079000 7604700 4512300 184740000 196820000 171650000 9822100 5706400 10123000 169040000 161590000 144310000 0 0 0 17859 239 17304 332037;332038;332039;332040;332041;332042;332043;332044;332045;332046;332047;332048;332049;332050;332051;332052;332053;332054;332055;332056;332057;332058;332059;332060;332061;332062;332063;332064;332065;332066;332067;332068 202546;202547;202548;202549;202550;202551;202552;202553;202554;202555;202556;202557;202558;202559;202560;202561;202562;202563;202564;202565 202565 19 RTAVAEYPTK Unmodified 1134.6033 0.60332266 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 11.488 12.334 2 0.0022529 3081 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 82.645 56.473 25523000 2251900 0 0 0 0 0 0 3233400 2890800 0 0 0 3394200 4128800 0 0 0 0 5692000 0 3931500 0 0 0 17860 882 17305 332069;332070;332071;332072;332073;332074;332075 202566;202567 202567 2 RTDAQNTAAYIGNGDR Unmodified 1721.8081 0.80812349 144 P06996 ompC Outer membrane protein C yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 2 1 2 2 2 1 2 2 1 2 2 2 2 2 2 2 14.229 14.85 2;3 7.5698E-14 4048 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 175.28 175.28 225000000 10938000 4166900 10545000 6669500 6246900 9009600 4340200 4880600 4398200 31681000 27168000 27157000 4694100 6055000 4584500 2043400 0 5166200 7735800 9397100 7977600 10496000 10000000 9645500 17861 144 17306 332076;332077;332078;332079;332080;332081;332082;332083;332084;332085;332086;332087;332088;332089;332090;332091;332092;332093;332094;332095;332096;332097;332098;332099;332100;332101;332102;332103;332104;332105;332106;332107;332108;332109;332110;332111;332112;332113;332114;332115;332116 202568;202569;202570;202571;202572;202573;202574;202575;202576;202577;202578;202579;202580;202581;202582 202570 14 RTDAQNTAAYIGNGDRAETYTGGLK Unmodified 2642.2685 0.26847031 144 P06996 ompC Outer membrane protein C yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 23.103 22.315 3;4 1.8813E-06 7696 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 89.923 75.816 129200000 0 0 0 7553200 8724000 10210000 0 0 0 10352000 18750000 29315000 0 0 0 0 5596100 0 0 0 0 15243000 11286000 12170000 17862 144 17307 332117;332118;332119;332120;332121;332122;332123;332124;332125;332126;332127;332128;332129;332130;332131;332132;332133;332134;332135 202583;202584;202585;202586;202587;202588;202589;202590;202591 202587 8 RTDGSPTYNFCVVVDDWDMEITHVIR Unmodified 3124.4383 0.43825453 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.415 52.967 3;4 1.252E-15 25055 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 145.2 142.96 1349500000 64640000 61578000 60742000 0 0 0 104260000 93217000 80007000 0 0 0 144340000 145920000 133740000 0 0 0 159600000 157390000 144040000 0 0 0 17863 92 17308 332136;332137;332138;332139;332140;332141;332142;332143;332144;332145;332146;332147;332148;332149;332150;332151;332152;332153;332154;332155;332156;332157;332158;332159 202592;202593;202594;202595;202596;202597;202598;202599;202600;202601;202602;202603;202604;202605 202603 14 RTDIVETLFGIR Unmodified 1418.7882 0.78816332 593 P0AAG8 mglA Galactose/methyl galactoside import ATP-binding protein MglA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 47.161 45.689 3 3.9719E-05 22121 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.105 81.572 39739000 8545500 6756600 8014000 3926300 4101000 3423000 0 0 0 0 1020300 0 0 0 0 0 0 0 0 0 2475100 725440 752080 0 17864 593 17309 332160;332161;332162;332163;332164;332165;332166;332167;332168;332169 202606;202607;202608;202609 202609 4 RTDLNPPVDFPADAK Unmodified 1654.8315 0.83148469 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.321 27.991 3 0.0029918 13045 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.489 54.774 76134000 7255300 8623500 5344800 1046500 937890 1052400 0 10526000 0 1757900 0 0 5092500 5516900 5611600 0 0 0 6716100 8077800 8574500 0 0 0 17865 303 17310 332170;332171;332172;332173;332174;332175;332176;332177;332178;332179;332180;332181;332182;332183 202610;202611;202612 202610 2 RTEEHIK Unmodified 911.48248 0.48247924 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 9.6482 9.871 2 0.035283 1672 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 68.915 53.476 13684000 0 0 0 0 0 0 0 0 0 2458900 2184300 2369500 0 0 0 0 0 0 0 0 0 1909500 2142100 2620000 17866 1909 17311 332184;332185;332186;332187;332188;332189 202613;202614;202615 202614 3 RTENLYILPASQTR Unmodified 1660.8897 0.88966827 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 2 2 1 1 1 2 2 2 2 2 2 1 26.29 25.06 2;3 3.3322E-05 11298 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.975 75.71 249820000 23404000 19448000 22630000 668250 1453200 411910 13729000 20502000 20709000 1290500 1182400 1143700 16550000 19066000 18131000 0 0 0 24527000 21906000 21795000 0 1278400 0 17867 899 17312 332190;332191;332192;332193;332194;332195;332196;332197;332198;332199;332200;332201;332202;332203;332204;332205;332206;332207;332208;332209;332210;332211;332212;332213;332214;332215;332216;332217;332218;332219 202616;202617;202618;202619;202620;202621;202622 202618 7 RTEPAAPVASTK Unmodified 1226.6619 0.66190017 1072 P11557 damX Cell division protein DamX yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 2 2 1 2 1 2 2 2 2 1 2 2 1 2 2 2 2 2 11.171 11.83 2;3 4.2858E-05 2490 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 117.09 97.305 325660000 4887800 13437000 10353000 3644900 3923400 3012700 33314000 22336000 33533000 15370000 16339000 12058000 12305000 17955000 21308000 0 0 0 24797000 26597000 25086000 9297700 8152000 7951400 17868 1072 17313 332220;332221;332222;332223;332224;332225;332226;332227;332228;332229;332230;332231;332232;332233;332234;332235;332236;332237;332238;332239;332240;332241;332242;332243;332244;332245;332246;332247;332248;332249;332250;332251;332252;332253;332254;332255 202623;202624 202623 2 RTEQILALTGCDR Unmodified 1531.7777 0.77767498 401 P0A867 talA Transaldolase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 1 24.509 23.557 2;3 3.6221E-32 10265 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 269.81 242.7 2288300000 474920000 449640000 401620000 866080 0 792210 97542000 324510000 257620000 0 0 0 57896000 14678000 11747000 0 0 0 85368000 86355000 24710000 0 0 0 17869 401 17314 332256;332257;332258;332259;332260;332261;332262;332263;332264;332265;332266;332267;332268;332269;332270;332271;332272;332273;332274;332275;332276;332277 202625;202626;202627;202628;202629;202630;202631;202632;202633;202634;202635;202636;202637;202638;202639;202640;202641;202642;202643;202644 202638 20 RTFANMLK Unmodified 979.52732 0.52732094 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 17.394 17.81 2 0.0012802 6046 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.26 91.125 56505000 0 0 0 0 0 0 0 0 0 0 1020000 733130 11046000 10173000 10544000 3529900 2044900 2475200 3386100 4127800 3926600 1801900 0 1696100 17870 647 17315 332278;332279;332280;332281;332282;332283;332284;332285;332286;332287;332288;332289;332290 202645;202646;202647;202648;202649;202650 202648 6 RTFEVTEDESK Unmodified 1339.6256 0.62557424 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 2 2 2 2 2 2 1 2 2 12.942 13.793 2;3 2.5468E-05 3924 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 136.02 88.941 180390000 12134000 4423300 4680600 0 0 0 19469000 24435000 19709000 0 0 0 13786000 18891000 17157000 0 0 0 5738900 15885000 24081000 0 0 0 17871 170 17316 332291;332292;332293;332294;332295;332296;332297;332298;332299;332300;332301;332302;332303;332304;332305;332306;332307;332308;332309;332310;332311 202651;202652;202653;202654 202653 3 RTFEVTEDESKEK Unmodified 1596.7631 0.76313036 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.739 12.612 3 1.9465E-05 3484 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.692 71.491 137710000 12977000 11316000 13261000 737040 749380 666200 12484000 13489000 19718000 0 0 0 12514000 0 10147000 0 0 0 13524000 16126000 0 0 0 0 17872 170 17317 332312;332313;332314;332315;332316;332317;332318;332319;332320;332321;332322;332323;332324 202655 202655 1 RTGAQVR Unmodified 786.44603 0.44603416 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.8224 7.4384 2 0.0058746 1670 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 102.77 67.668 815590000 92495000 101380000 101260000 7913900 8062600 6394800 40068000 39705000 38653000 14141000 12379000 13255000 36029000 30622000 29536000 4641500 4735500 3848200 68154000 66168000 61898000 10257000 10962000 13035000 17873 365 17318 332325;332326;332327;332328;332329;332330;332331;332332;332333;332334;332335;332336;332337;332338;332339;332340;332341;332342;332343;332344;332345;332346;332347;332348;332349 202656;202657;202658;202659;202660;202661;202662;202663;202664;202665;202666;202667;202668;202669;202670;202671;202672 202660 17 RTGNMMQPQLADK Unmodified 1488.7177 0.71771726 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 15.13 15.962 2 0.00090766 5410 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.632 56.606 23032000 3824600 3919600 4603400 0 0 0 0 0 0 0 0 0 2182500 0 2052700 0 0 0 3144600 3304600 0 0 0 0 17874 158 17319 332350;332351;332352;332353;332354;332355;332356 202673 202673 1 RTGTVLAAVK Unmodified 1014.6186 0.61857879 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.788 13.629 2 0.0053128 4171 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 68.371 43.552 306950000 38815000 29488000 36203000 0 0 0 28047000 26070000 26392000 0 0 0 21078000 14044000 15563000 0 0 0 21350000 26406000 23494000 0 0 0 17875 784 17320 332357;332358;332359;332360;332361;332362;332363;332364;332365;332366;332367;332368 202674;202675 202675 2 RTGWLDTVAVR Unmodified 1272.6939 0.693869 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.941 26.793 2;3 5.4116E-14 12244 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 204.56 165.6 709790000 76592000 69655000 53246000 0 0 0 42368000 39706000 38329000 0 0 0 61708000 55086000 49054000 0 0 0 67267000 81735000 75049000 0 0 0 17876 333 17321 332369;332370;332371;332372;332373;332374;332375;332376;332377;332378;332379;332380;332381;332382;332383;332384;332385;332386;332387;332388;332389;332390;332391;332392 202676;202677;202678;202679;202680;202681;202682;202683;202684;202685;202686;202687;202688;202689;202690;202691;202692;202693;202694;202695;202696;202697;202698;202699 202685 24 RTIFELR Unmodified 933.5396 0.53960019 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.543 22.649 2 0.0036659 10060 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 110.12 51.459 290960000 20586000 24545000 20183000 0 599380 617410 20697000 20142000 22427000 4291400 5158900 4054900 18065000 16905000 19295000 0 0 0 25144000 30581000 32119000 2436200 1651700 1455400 17877 882 17322 332393;332394;332395;332396;332397;332398;332399;332400;332401;332402;332403;332404;332405;332406;332407;332408;332409;332410;332411;332412 202700;202701;202702;202703 202702 4 RTPNGLIR Unmodified 925.54575 0.5457482 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.363 12.843 2 0.003743 3077 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 95.909 41.704 60824000 0 0 0 4407900 5172600 5478900 0 0 0 8503500 7302700 6503300 0 0 0 1479300 0 0 0 0 0 7317700 6664000 7993800 17878 1094 17323 332413;332414;332415;332416;332417;332418;332419;332420;332421;332422 202704;202705;202706;202707;202708;202709;202710;202711;202712 202704 9 RTSHITVVVSDR Unmodified 1368.7474 0.74736113 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.368 13.038 3 0.039985 3237 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 40.475 37.525 151970000 12786000 8102300 10921000 3393100 3955400 5467300 5458900 7805000 5819500 3263500 3258500 3435900 6694900 8089400 6410300 0 3883200 0 14764000 13523000 10093000 4782600 5537000 4523300 17879 1636 17324 332423;332424;332425;332426;332427;332428;332429;332430;332431;332432;332433;332434;332435;332436;332437;332438;332439;332440;332441;332442;332443;332444 202713;202714;202715;202716;202717;202718 202713 2 RTSLDSPLPVQVLEASPK Unmodified 1936.0629 0.062941193 1121 P16676 cysA Sulfate/thiosulfate import ATP-binding protein CysA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 39.601 37.889 3 0.071576 14794 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 33.142 31.408 20818000 0 0 0 915030 1057900 1115200 0 0 0 2005400 0 0 0 0 0 1741100 0 0 3581500 5216500 0 0 2605600 2579800 17880 1121 17325 332445;332446;332447;332448;332449;332450;332451;332452;332453 202719 202719 1 RTSLPGSTGLR Unmodified 1143.636 0.63601977 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 2 2 1 1 1 14.42 14.696 2;3 8.6206E-05 3940 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 87.667 78.56 65511000 0 0 0 0 0 0 0 10993000 5246400 15839000 13792000 14426000 0 0 0 0 528830 895730 0 3789600 0 0 0 0 17881 1088 17326 332454;332455;332456;332457;332458;332459;332460;332461;332462;332463;332464;332465 202720;202721;202722;202723;202724;202725 202725 6 RTTSSSTR Unmodified 894.45191 0.45190739 11 CON__P04264 yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 8.3185 8.3905 2 0.041053 1323 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 63.419 22.846 11534000 0 0 0 0 0 0 0 0 0 10113000 0 0 0 0 0 372610 0 1049000 0 0 0 0 0 0 + 17882 11 17327 332466;332467;332468 202726 202726 1 RTVAGFHLVGPWEQTVK Unmodified 1924.0319 0.031915836 1402 P33012 sbmC DNA gyrase inhibitor yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 34.478 32.475 3 0.1108 11142 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 26.808 23.089 12163000 0 0 0 4851400 0 4646200 0 0 0 2665300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17883 1402 17328 332469;332470;332471 202727;202728 202728 2 RTYIGSMPGK Unmodified 1108.5699 0.56991404 536 P0A9M0 lon Lon protease yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.045 14.724 2 0.00057166 3816 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 101.9 72.735 80392000 4594500 0 0 359030 270880 441770 6926100 4874500 6360900 0 2642400 2091100 3913200 4000000 4453100 9635400 6485700 7343800 6259200 4400800 5339300 0 0 0 17884 536 17329 332472;332473;332474;332475;332476;332477;332478;332479;332480;332481;332482;332483;332484;332485;332486;332487;332488;332489 202729;202730;202731 202730 3 RVAALEGDVLGSYQHGAR Unmodified 1897.9759 0.97585752 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 3 2 1 2 23.884 22.998 3;4 2.3414E-17 10067 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 162.15 142.94 1556600000 71009000 79371000 66635000 6488800 5412500 6609900 128870000 157970000 148610000 10747000 10447000 9594900 117540000 92890000 97777000 7023200 3867200 2717900 175970000 159090000 179040000 6587100 4972300 7386000 17885 267 17330 332490;332491;332492;332493;332494;332495;332496;332497;332498;332499;332500;332501;332502;332503;332504;332505;332506;332507;332508;332509;332510;332511;332512;332513;332514;332515;332516;332517;332518;332519;332520;332521;332522;332523;332524;332525;332526;332527;332528;332529;332530;332531;332532;332533;332534 202732;202733;202734;202735;202736;202737;202738;202739;202740;202741;202742;202743;202744;202745;202746;202747;202748;202749;202750;202751;202752;202753;202754;202755;202756;202757;202758;202759;202760;202761;202762 202742 30 RVADELAVITCAPFVTAPNK Unmodified 2171.1409 0.14087394 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 45.259 43.83 3 3.4132E-05 21221 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 82.635 78.018 58707000 14003000 15005000 10397000 0 0 0 3751200 0 2906600 0 0 0 0 0 0 0 0 0 5030200 4523600 3089900 0 0 0 17886 106 17331 332535;332536;332537;332538;332539;332540;332541;332542 202763 202763 1 RVAEALRDDLLAAK Unmodified 1539.8733 0.87328993 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 24.786 23.655 3 0.0049347 8243 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 60.196 48.428 103920000 0 0 0 2690800 4399500 3412700 0 0 0 3608600 3538900 5397000 33402000 30596000 0 0 0 0 0 0 0 7146200 5273000 4459100 17887 1503 17332 332543;332544;332545;332546;332547;332548;332549;332550;332551;332552;332553 202764;202765;202766 202765 3 RVAEEAR Unmodified 829.44061 0.44061443 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 10.053 10.283 2 0.0012569 1925 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 139.14 12.573 39041000 0 0 0 0 0 0 234300 0 0 7487800 6462100 12696000 0 0 0 0 0 10511000 0 0 0 0 0 1649800 17888 297 17333 332554;332555;332556;332557;332558;332559 202767;202768 202767 2 RVAFENIEDAAR Unmodified 1389.7001 0.70007659 1196 P22333 add Adenosine deaminase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 2 2 1 1 2 1 1 2 2 1 2 2 2 1 2 1 23.79 22.938 2;3 0.00093302 8080 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 66.492 51.154 179880000 7584400 13007000 10899000 1776400 790710 574450 18535000 9173600 7579700 8738900 7100100 4749100 20343000 16274000 18679000 0 0 0 8249300 17198000 8628500 0 0 0 17889 1196 17334 332560;332561;332562;332563;332564;332565;332566;332567;332568;332569;332570;332571;332572;332573;332574;332575;332576;332577;332578;332579;332580;332581;332582;332583;332584;332585;332586;332587 202769;202770;202771;202772;202773 202770 2 RVALADK Unmodified 771.46029 0.46028724 988 P0AG59 rpsN 30S ribosomal protein S14 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.727 11.299 2 0.0024642 2691 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 120.65 51.213 912470000 70650000 74229000 65593000 0 0 2091200 41486000 43686000 45298000 12586000 10772000 12355000 46272000 50234000 44762000 7528900 7868800 9869800 141210000 102830000 117940000 0 5202000 0 17890 988 17335 332588;332589;332590;332591;332592;332593;332594;332595;332596;332597;332598;332599;332600;332601;332602;332603;332604;332605;332606;332607 202774;202775;202776;202777;202778;202779 202778 6 RVALVPTMGNLHDGHMK Unmodified 1874.9607 0.9607415 1375 P31663 panC Pantothenate synthetase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 19.926 20.358 4 0.16583 8265 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 9.4742 4.2647 70831000 0 0 0 0 0 0 10118000 9424800 0 0 0 0 0 7991400 7390600 0 0 0 13846000 10817000 11243000 0 0 0 17891 1375 17336 332608;332609;332610;332611;332612;332613;332614 202780 202780 1 RVALYGIDYLMK Unmodified 1440.7799 0.77990682 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.792 38.989 3 5.0414E-05 18125 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 91.858 90.231 119680000 3778000 4533800 4976600 406500 0 502980 16427000 14308000 14020000 1713600 1038000 0 13517000 10695000 9378400 0 0 0 7300100 8132500 8949000 0 0 0 17892 212 17337 332615;332616;332617;332618;332619;332620;332621;332622;332623;332624;332625;332626;332627;332628;332629;332630 202781;202782;202783 202782 3 RVDAEGMK Unmodified 904.44365 0.44365089 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 2 1 1 1 1 1 1 10.446 11.269 2 0.0013574 2579 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.82 80.591 345830000 0 43576000 35792000 0 0 0 24778000 9501600 21113000 0 0 0 53147000 39571000 36493000 0 0 0 40764000 0 41099000 0 0 0 17893 638 17338 332631;332632;332633;332634;332635;332636;332637;332638;332639;332640;332641 202784;202785;202786;202787 202786 4 RVDFSLAR Unmodified 962.52976 0.52976379 828 P0AE12 amn AMP nucleosidase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 19.95 20.401 2 0.011698 7893 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.219 50.034 785580000 58292000 47725000 46609000 978800 640320 643920 84429000 81182000 94116000 0 0 0 63158000 0 0 0 0 0 110620000 95515000 101680000 0 0 0 17894 828 17339 332642;332643;332644;332645;332646;332647;332648;332649;332650;332651;332652;332653;332654 202788 202788 1 RVDTCAAEFATDTAYMYSTYEEECEANPSTDR Unmodified 3752.5189 0.5188852 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 47.794 46.469 3 1.7158E-43 22583 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 212.76 212.76 155990000 29404000 29510000 33015000 0 0 0 0 0 0 0 0 0 5771200 0 0 0 0 0 20701000 21176000 16409000 0 0 0 17895 65 17340 332655;332656;332657;332658;332659;332660;332661 202789;202790;202791;202792 202792 4 RVDVMTALEMEAAVNASVQQQNIFIGCAAVADYR Unmodified 3739.812 0.81203494 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.065 49.797 4 0.16762 24179 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 4.5767 0.64869 936640000 91524000 71513000 74724000 1370300 0 0 117970000 110560000 105760000 0 0 0 68717000 0 60272000 0 0 0 86542000 79168000 68523000 0 0 0 17896 670 17341 332662;332663;332664;332665;332666;332667;332668;332669;332670;332671;332672;332673 202793 202793 1 RVDYSGR Unmodified 851.42496 0.42496436 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9.4132 9.9776 2 3.1196E-13 2010 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 234.63 20.388 29612000000 160340000 161180000 121110000 0 5383900 0 32400000 22001000 19304000 1245400000 1112400000 1208600000 36496000 36806000 29831000 5946200000 6809300000 6956800000 159340000 132720000 178110000 1918900000 1667900000 1651300000 17897 458 17342 332674;332675;332676;332677;332678;332679;332680;332681;332682;332683;332684;332685;332686;332687;332688;332689;332690;332691;332692;332693;332694;332695;332696;332697 202794;202795;202796;202797;202798;202799;202800;202801;202802;202803;202804;202805;202806;202807;202808;202809;202810;202811;202812;202813;202814;202815;202816 202794 23 RVEAVMAGMDITPER Unmodified 1673.8229 0.82291062 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 2 2 2 29.646 28.345 2;3 1.8154E-45 13181 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 280.23 255.94 2294300000 314720000 318020000 263920000 0 0 0 175170000 160260000 169130000 0 0 0 133970000 144100000 151320000 0 0 0 155920000 156610000 151130000 0 0 0 17898 1349 17343 332698;332699;332700;332701;332702;332703;332704;332705;332706;332707;332708;332709;332710;332711;332712;332713;332714;332715;332716;332717;332718;332719;332720;332721;332722 202817;202818;202819;202820;202821;202822;202823;202824;202825;202826;202827;202828;202829;202830;202831;202832;202833;202834;202835;202836;202837;202838;202839;202840 202829 24 RVEDQER Unmodified 930.45191 0.45190739 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.5684 6.3498 2 0.00072777 904 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.35 103.93 584820000 0 0 0 979630 594020 840310 165830000 161860000 156790000 3040300 2367500 2463300 11977000 9973800 9954900 0 0 0 17767000 16006000 24378000 0 0 0 17899 1191 17344 332723;332724;332725;332726;332727;332728;332729;332730;332731;332732;332733;332734;332735;332736;332737 202841;202842;202843;202844;202845;202846 202846 6 RVEESVVNQGWITLQEAGINLDR Unmodified 2625.3511 0.35107772 126 P06709 birA Bifunctional ligase/repressor BirA yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 50.624 49.171 3 2.9863E-05 24409 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 79.177 75.61 59103000 0 6013700 0 0 0 0 9528500 8998300 10046000 0 0 0 0 0 0 0 0 0 6088500 8451600 9976300 0 0 0 17900 126 17345 332738;332739;332740;332741;332742;332743;332744 202847 202847 0 RVEGISALR Unmodified 999.58253 0.58252764 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.206 15.848 2 5.2683E-11 4969 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 204.86 149.19 538520000 33200000 34378000 37659000 0 0 0 37848000 37223000 39858000 0 1237100 1387100 49422000 49065000 44249000 0 0 0 57130000 53144000 60953000 0 790000 974630 17901 882 17346 332745;332746;332747;332748;332749;332750;332751;332752;332753;332754;332755;332756;332757;332758;332759;332760 202848;202849;202850;202851;202852;202853;202854;202855;202856;202857 202855 9 RVEIDPSLLEDDKEMLEDLVAAAFNDAAR Unmodified 3244.5922 0.59217221 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 55.782 54.536 3;4 1.0375E-66 21984 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 258.58 256.45 7941500000 222590000 307500000 354330000 52673000 59214000 8573900 258740000 159850000 206220000 400200000 407820000 476870000 267290000 248450000 235050000 590950000 702820000 1162200000 433270000 368990000 383430000 234150000 210860000 189440000 17902 416 17347 332761;332762;332763;332764;332765;332766;332767;332768;332769;332770;332771;332772;332773;332774;332775;332776;332777;332778;332779;332780;332781;332782;332783;332784;332785;332786;332787;332788;332789;332790;332791;332792;332793;332794;332795;332796;332797;332798;332799;332800;332801;332802;332803;332804;332805;332806 202858;202859;202860;202861;202862;202863;202864;202865;202866;202867;202868;202869;202870;202871;202872;202873;202874;202875;202876;202877;202878;202879;202880;202881;202882 202864 24 RVEIDPSLLEDDKEMLEDLVAAAFNDAAR Oxidation (M) 3260.5871 0.58708683 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 1 2 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.482 54.333 4 7.0058E-17 21637 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 154.63 149.52 187060000 313130 135810 0 0 632970 0 0 87846 0 22724000 23684000 27646000 0 0 0 12875000 16806000 22714000 0 6307700 0 18284000 14112000 20734000 17903 416 17347 332807;332808;332809;332810;332811;332812;332813;332814;332815;332816;332817;332818;332819;332820 202883;202884;202885;202886;202887 202887 202 3 RVEIEVK Unmodified 871.51272 0.51271674 480 P0A910 ompA Outer membrane protein A yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 12.364 13.218 2 0.00063402 3857 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 152.34 50.041 3105000000 166620000 133240000 3218200 63465000 52392000 333390 180010000 0 179950000 0 47596000 0 285720000 282240000 317630000 0 0 0 485360000 463600000 443660000 0 0 0 17904 480 17348 332821;332822;332823;332824;332825;332826;332827;332828;332829;332830;332831;332832;332833;332834;332835;332836 202888;202889;202890;202891;202892;202893;202894;202895;202896;202897 202891 10 RVEITGPVER Unmodified 1154.6408 0.6407708 195 P08997 aceB Malate synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 3 2 1 1 1 1 1 1 14.63 15.385 1;2;3 0.00027636 5104 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.611 82.723 9143100000 3278000000 2996100000 702690000 2115200 2720100 3192900 696340000 734970000 726990000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17905 195 17349 332837;332838;332839;332840;332841;332842;332843;332844;332845;332846;332847;332848;332849 202898;202899;202900;202901;202902;202903;202904;202905 202903 8 RVELITTDGFLHPNQVLK Unmodified 2079.1477 0.14767388 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 37.468 35.795 3;4 9.3736E-07 16683 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 98.165 90.846 476480000 44085000 35856000 44500000 0 0 0 40164000 39127000 41031000 0 0 0 33361000 27851000 25811000 0 0 0 53644000 48652000 42401000 0 0 0 17906 248 17350 332850;332851;332852;332853;332854;332855;332856;332857;332858;332859;332860;332861;332862;332863;332864;332865;332866;332867;332868;332869;332870;332871;332872;332873 202906;202907;202908;202909;202910;202911;202912;202913;202914;202915 202914 9 RVEQLFAYADTIEK Unmodified 1681.8675 0.86753585 117 P05719 hsdS Type-1 restriction enzyme EcoKI specificity protein yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 36.256 34.723 3 0.10926 17055 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 31.677 21.62 42187000 0 0 3460400 0 0 0 0 6560200 8754700 0 0 0 4942700 1784400 4861500 0 0 0 0 5649800 6173800 0 0 0 17907 117 17351 332874;332875;332876;332877;332878;332879;332880;332881 202916;202917 202916 0 RVETPAVVAPR Unmodified 1193.6881 0.68805534 1280 P26365 amiB N-acetylmuramoyl-L-alanine amidase AmiB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.298 16.114 3 0.11061 5217 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 32.159 32.159 32940000 3757000 0 0 0 0 0 3881200 5469100 5396900 0 0 0 2981700 2591900 2359800 0 0 0 3034700 0 3467800 0 0 0 17908 1280 17352 332882;332883;332884;332885;332886;332887;332888;332889;332890 202918;202919 202918 0 RVEVDGIQAWWDLDAK Unmodified 1899.9479 0.94791144 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 48.248 46.942 2;3 1.9698E-39 22661 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 264.58 190.94 525020000 107290000 95698000 104650000 0 0 0 21372000 21735000 23180000 0 0 0 22197000 19585000 16316000 0 0 0 28077000 32438000 32480000 0 0 0 17909 58 17353 332891;332892;332893;332894;332895;332896;332897;332898;332899;332900;332901;332902;332903;332904;332905 202920;202921;202922;202923;202924;202925;202926;202927;202928;202929;202930;202931;202932;202933;202934;202935 202925 15 RVFAYATHPIFSGNAANNLR Unmodified 2218.1396 0.13956881 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 1 1 1 2 2 2 28.084 26.855 3;4 3.0662E-15 9796 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 153.86 148.99 380900000 25535000 14631000 15554000 10079000 16017000 15815000 7486600 12928000 11952000 12840000 4549800 11366000 12660000 13123000 16303000 21056000 14558000 16586000 13447000 17959000 15824000 29893000 24711000 26022000 17910 300 17354 332906;332907;332908;332909;332910;332911;332912;332913;332914;332915;332916;332917;332918;332919;332920;332921;332922;332923;332924;332925;332926;332927;332928;332929;332930;332931;332932;332933;332934;332935;332936;332937;332938;332939;332940 202936;202937;202938;202939;202940;202941;202942;202943;202944;202945;202946;202947;202948;202949;202950;202951;202952;202953;202954;202955;202956;202957;202958;202959 202947 21 RVFPAIDYNR Unmodified 1249.6568 0.65675521 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 24.887 23.478 2;3 0.00022763 8454 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 122.96 92.887 66189000 0 0 0 0 0 0 11392000 10255000 9724200 8863200 12067000 12370000 0 0 0 0 0 0 0 0 0 911140 605990 0 17911 982 17355 332941;332942;332943;332944;332945;332946;332947;332948;332949;332950;332951;332952;332953;332954 202960;202961;202962;202963;202964 202962 5 RVGDLAR Unmodified 785.45079 0.45078518 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 10.902 11.663 2 0.0021383 2814 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.25 21.966 880080000 83914000 83087000 80105000 0 0 0 116980000 111680000 122680000 3472500 0 0 38833000 42305000 38604000 0 0 0 57049000 53211000 48162000 0 0 0 17912 1662 17356 332955;332956;332957;332958;332959;332960;332961;332962;332963;332964;332965;332966;332967 202965;202966;202967;202968;202969;202970;202971;202972;202973;202974 202966 10 RVGGSTYQVPVEVR Unmodified 1545.8263 0.82633974 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 21.328 21.622 2;3 1.538E-14 8516 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 194.06 160.1 519660000 65013000 57436000 62620000 0 0 0 28665000 29020000 28583000 1170000 0 0 37612000 28796000 33352000 0 0 0 47126000 49624000 50639000 0 0 0 17913 67 17357 332968;332969;332970;332971;332972;332973;332974;332975;332976;332977;332978;332979;332980;332981;332982;332983;332984;332985;332986;332987;332988;332989;332990;332991;332992 202975;202976;202977;202978;202979;202980;202981;202982;202983;202984;202985;202986;202987;202988;202989;202990;202991;202992 202988 18 RVGGSTYQVPVEVRPVR Unmodified 1898.0486 0.048628533 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 1 1 1 2 2 2 2 2 2 21.475 21.534 3;4 4.7828E-14 8527 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 164.01 154.76 2878100000 372630000 283800000 304950000 5833000 5788000 5870200 154420000 156100000 160300000 25262000 62745000 49447000 154560000 160180000 176260000 3336500 2942000 2556100 269470000 236850000 251490000 13382000 9251800 10698000 17914 67 17358 332993;332994;332995;332996;332997;332998;332999;333000;333001;333002;333003;333004;333005;333006;333007;333008;333009;333010;333011;333012;333013;333014;333015;333016;333017;333018;333019;333020;333021;333022;333023;333024;333025;333026;333027;333028;333029;333030;333031;333032;333033;333034;333035;333036;333037;333038;333039 202993;202994;202995;202996;202997;202998;202999;203000;203001;203002;203003;203004;203005;203006;203007;203008;203009;203010;203011;203012;203013;203014;203015;203016;203017;203018;203019;203020;203021;203022;203023;203024;203025;203026;203027 203018 35 RVGLSPTPCLER Unmodified 1383.7293 0.72926823 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 19.891 20.177 2;3 0.00043125 5758 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 78.324 75.286 140580000 16054000 14237000 12899000 0 0 434830 0 0 0 0 0 0 0 0 0 40803000 29748000 26399000 0 0 0 0 0 0 17915 733 17359 333040;333041;333042;333043;333044;333045;333046;333047;333048;333049;333050;333051;333052 203028;203029 203029 2 RVGYLVVSTDR Unmodified 1263.6935 0.69353465 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 20.466 20.612 2;3 0.0010344 6860 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 61.435 48.479 152960000 2951800 3274800 1736900 1095100 2949000 1167400 4475700 15533000 18971000 7244900 8746600 6010400 13632000 11900000 9896300 0 0 0 9530900 7147200 6947700 7276100 6352200 6121200 17916 644 17360 333053;333054;333055;333056;333057;333058;333059;333060;333061;333062;333063;333064;333065;333066;333067;333068;333069;333070;333071;333072;333073;333074;333075;333076;333077;333078;333079;333080;333081;333082;333083;333084;333085 203030;203031;203032;203033;203034;203035;203036;203037;203038;203039;203040 203030 11 RVHAPSGR Unmodified 878.48348 0.48348229 1733 P69441 adk Adenylate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.2833 6.1324 2 0.00017368 951 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 156.4 122.89 1142400000 81667000 59678000 68231000 0 0 0 102540000 141300000 160070000 0 0 0 77157000 72729000 77702000 0 0 0 116540000 91652000 93151000 0 0 0 17917 1733 17361 333086;333087;333088;333089;333090;333091;333092;333093;333094;333095;333096;333097 203041;203042;203043;203044;203045;203046;203047;203048;203049;203050;203051 203051 11 RVIEGDK Unmodified 815.45012 0.45011648 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 5.1625 6.1102 2 0.0071719 1298 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 98.458 45.775 143880000 0 0 0 44640000 0 0 0 0 0 0 0 0 14013000 12204000 15297000 0 0 0 19739000 20900000 17082000 0 0 0 17918 531 17362 333098;333099;333100;333101;333102;333103;333104 203052;203053;203054 203052 3 RVIEGDKNVNMMEVAIDEACVR Unmodified 2547.2244 0.22436235 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 37.217 34.918 3 0.00013421 13718 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 77.847 75.085 15785000 0 0 0 0 0 0 0 0 0 3093300 2856400 3244000 0 0 0 0 0 0 0 0 0 2350600 1602100 2638400 17919 531 17363 333105;333106;333107;333108;333109;333110 203055;203056 203056 2 RVIESLIHSGEPLGLEAGSK Unmodified 2091.1324 0.13241774 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.481 30.125 3 1.1447E-14 14091 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143.93 142.93 242730000 24105000 19038000 17861000 0 0 0 19537000 14906000 15782000 0 0 0 19487000 20898000 21573000 0 0 0 26151000 22300000 21090000 0 0 0 17920 1172 17364 333111;333112;333113;333114;333115;333116;333117;333118;333119;333120;333121;333122 203057;203058;203059 203059 3 RVLALDMGALVAGAK Unmodified 1483.8545 0.85446874 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.892 39.064 3 1.8616E-06 19074 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.14 97.772 164230000 14630000 15664000 15424000 1329200 1321000 1050300 17734000 19414000 18636000 3206600 2474000 2280000 6933600 7040700 6864800 0 0 0 7933800 10195000 12099000 0 0 0 17921 1662 17365 333123;333124;333125;333126;333127;333128;333129;333130;333131;333132;333133;333134;333135;333136;333137;333138;333139;333140 203060;203061;203062;203063;203064 203061 3 RVLDELTLTK Unmodified 1186.6921 0.69213767 13 CON__P13645 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 26.631 25.148 2 0.00064724 8953 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 97.965 79.741 35626000 0 0 0 3061800 2515900 2388500 0 0 0 1856400 2309900 2243600 0 0 0 0 0 0 0 0 0 6755700 7429600 7064900 + 17922 13 17366 333141;333142;333143;333144;333145;333146;333147;333148;333149 203065;203066;203067 203065 3 RVLQMLEK Unmodified 1015.5848 0.58483582 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.071 17.724 2 0.00036631 6381 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 147.52 68.403 176130000 15364000 17120000 13650000 0 0 0 16792000 17361000 17156000 493250 0 0 11875000 0 10705000 0 0 0 19799000 19701000 16115000 0 0 0 17923 295 17367 333150;333151;333152;333153;333154;333155;333156;333157;333158;333159;333160;333161 203068;203069;203070;203071;203072;203073;203074;203075;203076;203077;203078 203071 11 RVNPDDSKED Unmodified 1173.5262 0.52619455 342 P0A7G2 rbfA Ribosome-binding factor A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 10.232 10.388 2 0.00018404 1850 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 138.4 120.36 20665000 0 0 0 0 0 0 0 0 0 7740600 7377000 5547800 0 0 0 0 0 0 0 0 0 0 0 0 17924 342 17368 333162;333163;333164 203079;203080;203081 203079 3 RVPETMPPQLFEK Oxidation (M) 1586.8127 0.81266351 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 1 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 2 1 1 1 24.873 23.841 2;3 2.5543E-05 10811 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.68 107.44 77132000 4583000 10113000 0 0 0 0 9590000 12627000 32175000 0 0 0 0 2326200 1214500 0 0 0 0 0 4504600 0 0 0 17925 428 17369 333165;333166;333167;333168;333169;333170;333171;333172;333173;333174;333175;333176 203082;203083;203084;203085;203086;203087;203088 203082 211 7 RVPETMPPQLFEK Unmodified 1570.8177 0.81774888 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 1 2 1 30.045 28.641 2;3 3.7315E-17 13617 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 203.61 203.61 2260300000 257340000 279500000 232950000 0 0 405930 413030000 390760000 416050000 0 2262200 0 54572000 64167000 53936000 0 0 0 17937000 63387000 13962000 0 0 0 17926 428 17369 333177;333178;333179;333180;333181;333182;333183;333184;333185;333186;333187;333188;333189;333190;333191;333192;333193;333194;333195;333196;333197;333198;333199;333200 203089;203090;203091;203092;203093;203094;203095;203096;203097;203098;203099;203100;203101;203102;203103;203104;203105;203106;203107;203108;203109;203110;203111;203112;203113;203114;203115;203116;203117;203118;203119;203120;203121;203122;203123;203124;203125;203126;203127;203128 203093 39 RVPLAPDIDAAIIAR Unmodified 1589.9253 0.9253255 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 39.495 37.801 2;3 2.1597E-09 13274 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 160.15 126.92 1753100000 51705000 51874000 50657000 32742000 33693000 33480000 147700000 127400000 141440000 73285000 66593000 57454000 87117000 89807000 81829000 21798000 10052000 14377000 145650000 150490000 148020000 44658000 46758000 44472000 17927 595 17370 333201;333202;333203;333204;333205;333206;333207;333208;333209;333210;333211;333212;333213;333214;333215;333216;333217;333218;333219;333220;333221;333222;333223;333224;333225;333226;333227;333228;333229;333230;333231;333232;333233;333234;333235;333236;333237;333238;333239;333240;333241;333242;333243;333244;333245;333246 203129;203130;203131;203132;203133;203134;203135;203136;203137;203138;203139;203140;203141;203142;203143;203144;203145;203146;203147;203148;203149;203150;203151;203152 203143 23 RVPLGVIGVIYEAR Unmodified 1540.9089 0.90894715 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.72 40.021 2;3 2.0851E-11 19477 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.87 171.77 508000000 69235000 56692000 51044000 0 0 0 51949000 45025000 42300000 0 0 0 30820000 30065000 27427000 0 0 0 32785000 38610000 32049000 0 0 0 17928 148 17371 333247;333248;333249;333250;333251;333252;333253;333254;333255;333256;333257;333258;333259;333260;333261;333262;333263;333264;333265;333266;333267;333268;333269;333270 203153;203154;203155;203156;203157;203158;203159;203160;203161;203162;203163;203164;203165;203166;203167;203168;203169 203164 17 RVPVLIGTGGTNAR Unmodified 1409.8103 0.81029574 1761 P75682 yagE Probable 2-keto-3-deoxy-galactonate aldolase YagE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 19.72 20.319 2 2.5192E-06 7869 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.19 111.99 21428000 7830400 7171600 6426200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17929 1761 17372 333271;333272;333273 203170;203171;203172 203170 3 RVPVTLFTK Unmodified 1059.6441 0.64406526 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.921 23.042 2 0.00075688 10011 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 117.89 96.59 342440000 22602000 23726000 21675000 331550 0 0 24573000 24619000 30748000 0 692930 0 31368000 27863000 26970000 0 0 0 34076000 40388000 32811000 0 0 0 17930 1332 17373 333274;333275;333276;333277;333278;333279;333280;333281;333282;333283;333284;333285;333286;333287 203173;203174;203175 203173 3 RVQTARPNR Unmodified 1096.6214 0.62137276 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 2 1 2 7.4211 7.9944 2;3 5.4952E-08 1802 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 175.91 166.32 682320000 102210000 80027000 86855000 5479600 4848900 4967300 32455000 29542000 27518000 29151000 34487000 38291000 28549000 23194000 23294000 0 6252200 8745100 30815000 25552000 27096000 13343000 10162000 9487100 17931 298 17374 333288;333289;333290;333291;333292;333293;333294;333295;333296;333297;333298;333299;333300;333301;333302;333303;333304;333305;333306;333307;333308;333309;333310;333311;333312;333313;333314;333315;333316;333317;333318 203176;203177;203178;203179;203180;203181;203182;203183;203184;203185;203186;203187;203188;203189;203190 203178 15 RVSQASDSYYYR Unmodified 1493.6899 0.68990583 861 P0AEH5 elaB Protein ElaB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 13.553 14.119 2;3 5.3563E-12 3687 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 150.51 150.03 261580000 16437000 4265500 9545400 21390000 20888000 21196000 34674000 28761000 24392000 20952000 18955000 21366000 0 0 0 0 0 0 0 0 0 7155100 5730000 5870700 17932 861 17375 333319;333320;333321;333322;333323;333324;333325;333326;333327;333328;333329;333330;333331;333332;333333;333334;333335;333336;333337;333338;333339;333340;333341;333342;333343;333344;333345;333346;333347 203191;203192;203193;203194;203195;203196;203197;203198;203199;203200;203201;203202;203203;203204 203193 14 RVTDTLNR Unmodified 973.53049 0.53049207 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 11.573 11.927 2 0.0046743 2481 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 89.698 48.196 57074000 0 0 0 0 0 0 0 0 0 0 0 0 31297000 0 0 9761200 4064200 3173200 0 0 8777800 0 0 0 17933 647 17376 333348;333349;333350;333351;333352 203205 203205 1 RVTFLGFDAATEAR Unmodified 1552.7998 0.79979063 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 2 2 2 2 2 1 2 35.012 33.543 2;3 4.5435E-15 15870 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 200.42 187.07 1025100000 119820000 38505000 107550000 0 0 992760 167960000 55025000 161300000 0 0 0 66521000 41198000 64996000 0 0 0 77948000 57947000 65357000 0 0 0 17934 468 17377 333353;333354;333355;333356;333357;333358;333359;333360;333361;333362;333363;333364;333365;333366;333367;333368;333369;333370;333371;333372;333373;333374 203206;203207;203208;203209;203210;203211;203212;203213;203214;203215;203216;203217;203218;203219;203220;203221;203222;203223;203224;203225;203226 203220 21 RVTITIAADSIETAVK Unmodified 1686.9516 0.95159983 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 1 1 2 1 2 2 2 35.06 33.294 2;3 3.1392E-18 15873 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 186.56 156.01 440470000 0 0 0 7832900 9497400 9350700 0 0 0 18453000 18466000 18755000 107940000 25302000 84143000 2516400 0 0 34875000 32759000 32301000 12986000 14569000 10721000 17935 396 17378 333375;333376;333377;333378;333379;333380;333381;333382;333383;333384;333385;333386;333387;333388;333389;333390;333391;333392;333393;333394;333395;333396;333397;333398;333399;333400;333401;333402 203227;203228;203229;203230;203231;203232;203233;203234;203235;203236;203237;203238;203239;203240;203241;203242;203243;203244;203245;203246;203247;203248 203237 21 RVTPVGTPVTEEDFLQPGNK Unmodified 2183.1222 0.12224699 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.452 31.953 3 5.7232E-05 15495 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.959 76.426 316920000 21612000 21138000 18700000 0 826770 0 29854000 29165000 23691000 0 0 0 27061000 27211000 23584000 0 0 0 5520000 40439000 46883000 1237200 0 0 17936 499 17379 333403;333404;333405;333406;333407;333408;333409;333410;333411;333412;333413;333414;333415;333416 203249 203249 1 RVTTVLVPSQLQDK Unmodified 1582.9043 0.90425571 811 P0ADV1 lptA Lipopolysaccharide export system protein LptA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.477 24.388 2;3 1.7719E-19 10904 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 243.85 228.58 1084300000 104350000 98561000 85879000 0 0 0 102480000 85793000 88598000 0 0 0 86269000 76980000 74152000 0 0 0 92019000 90894000 98354000 0 0 0 17937 811 17380 333417;333418;333419;333420;333421;333422;333423;333424;333425;333426;333427;333428;333429;333430;333431;333432;333433;333434;333435;333436;333437;333438;333439;333440 203250;203251;203252;203253;203254;203255;203256;203257;203258;203259;203260;203261;203262;203263;203264;203265;203266;203267;203268;203269;203270;203271;203272;203273 203259 24 RVVAVTACPTGVAHTFMAAEAIETEAK Unmodified 2829.4153 0.41533424 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 38.567 36.774 4 1.835E-05 14545 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 74.206 72.122 35351000 0 4995900 4362400 2476800 2153000 1766200 0 0 0 0 0 4642200 0 0 0 0 0 0 0 0 6747600 2071300 2820300 3314700 17938 1167 17381 333441;333442;333443;333444;333445;333446;333447;333448;333449;333450 203274 203274 1 RVVEPLITLAK Unmodified 1237.7758 0.77580772 984 P0AG44 rplQ 50S ribosomal protein L17 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 28.385 27.1 2;3 1.6079E-05 12538 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 142.83 120.74 2645200000 294800000 273030000 256890000 16153000 21289000 18254000 122660000 121090000 106230000 31305000 30372000 30860000 150880000 142760000 143760000 25382000 18249000 18476000 231800000 276620000 226480000 29656000 28295000 29958000 17939 984 17382 333451;333452;333453;333454;333455;333456;333457;333458;333459;333460;333461;333462;333463;333464;333465;333466;333467;333468;333469;333470;333471;333472;333473;333474;333475;333476;333477;333478;333479;333480;333481;333482;333483;333484;333485;333486;333487;333488;333489;333490;333491;333492;333493;333494;333495;333496;333497;333498 203275;203276;203277;203278;203279;203280;203281;203282;203283;203284;203285;203286;203287;203288;203289;203290;203291;203292;203293;203294;203295;203296;203297;203298;203299;203300;203301;203302;203303;203304;203305;203306;203307;203308;203309;203310;203311;203312;203313;203314;203315;203316 203293 42 RVVEVAER Unmodified 956.54033 0.54032847 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.099 11.915 2 0.00030466 2890 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 150.36 101.61 996900000 97851000 111910000 145540000 0 0 0 71309000 77206000 79520000 0 0 0 66729000 55053000 57047000 0 0 0 69929000 87309000 77494000 0 0 0 17940 1485 17383 333499;333500;333501;333502;333503;333504;333505;333506;333507;333508;333509;333510 203317;203318;203319;203320;203321;203322;203323;203324;203325 203323 9 RVVINKDTTTIIDGVGEEAAIQGR Unmodified 2554.3715 0.37147881 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 2 By matching By MS/MS By MS/MS By matching 1 1 1 1 32.818 31.227 4 0.081888 10714 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 32.081 31.89 12984000 0 0 0 3417700 3373700 4524000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1668400 17941 240 17384 333511;333512;333513;333514 203326;203327 203327 2 RVVLPEGEEAR Unmodified 1253.6728 0.67279921 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 2 2 2 1 1 2 2 2 2 2 2 14.339 15.093 2;3 2.8417E-10 4909 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 219.03 175.95 2168800000 372030000 271020000 299960000 1732300 2158300 1718200 119330000 140770000 122470000 1249400 856630 0 112230000 100490000 112270000 0 0 0 157730000 165110000 187690000 0 0 0 17942 1872 17385 333515;333516;333517;333518;333519;333520;333521;333522;333523;333524;333525;333526;333527;333528;333529;333530;333531;333532;333533;333534;333535;333536;333537;333538;333539;333540;333541;333542;333543;333544;333545;333546;333547;333548 203328;203329;203330;203331;203332;203333;203334;203335;203336;203337;203338;203339;203340;203341;203342;203343;203344;203345;203346;203347;203348;203349;203350;203351 203333 24 RVVMCSGK Unmodified 935.46809 0.46809151 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 10.155 11.009 2 0.0012393 2565 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 114.64 86.126 165840000 0 0 0 0 0 0 2009600 5367900 2078400 0 0 0 18004000 15995000 15571000 0 0 0 41673000 33676000 31465000 0 0 0 17943 937 17386 333549;333550;333551;333552;333553;333554;333555;333556;333557;333558 203352;203353;203354;203355;203356 203353 5 RVVMCSGKVYYDLLEQR Unmodified 2115.0605 0.060515127 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 2 By MS/MS 1 10.738 11.589 6 0.15252 2815 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 15.392 0.69758 1710100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1710100 0 0 0 17944 937 17387 333559 203357 203357 0 RVVMGEK Unmodified 817.44801 0.44800799 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.065 10.897 2 0.065273 2324 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 62.659 36.832 162710000 0 0 30467000 0 0 0 5242800 4305900 2972000 0 0 0 20032000 0 16430000 0 0 0 24625000 26991000 31647000 0 0 0 17945 338 17388 333560;333561;333562;333563;333564;333565;333566;333567;333568 203358;203359 203359 2 RVVSMVEFEK Unmodified 1222.638 0.63799361 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.18 21.928 2 0.00053354 9327 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 103.88 60.07 115220000 2735000 0 1809900 2916800 3107700 2033800 8238500 8517500 7642600 6357400 4190100 4488000 7013400 6058300 6019200 1254800 0 713200 8768400 11855000 10551000 4079900 3803800 3062100 17946 595 17389 333569;333570;333571;333572;333573;333574;333575;333576;333577;333578;333579;333580;333581;333582;333583;333584;333585;333586;333587;333588;333589;333590 203360;203361;203362;203363;203364;203365 203361 6 RVVTFRPGQK Unmodified 1186.6935 0.69347507 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 2 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.649 12.199 3 0.00033921 2697 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 89.827 66.507 266140000 8012700 13573000 9629100 0 0 0 13915000 11732000 16275000 5883700 5242000 6064600 16013000 14159000 12638000 27501000 27636000 32425000 8945000 14530000 16835000 2391400 2736400 0 17947 290 17390 333591;333592;333593;333594;333595;333596;333597;333598;333599;333600;333601;333602;333603;333604;333605;333606;333607;333608;333609;333610 203366;203367;203368;203369;203370;203371 203368 5 RVVVGLLLGEVIR Unmodified 1421.9082 0.90821887 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 2 1 2 2 2 2 45.783 44.242 3 1.6398E-05 21348 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.64 101.64 241770000 15339000 12317000 12167000 0 0 0 21376000 23146000 21873000 3148500 2962900 2934900 18923000 12454000 18430000 0 0 0 26587000 30023000 20085000 0 0 0 17948 396 17391 333611;333612;333613;333614;333615;333616;333617;333618;333619;333620;333621;333622;333623;333624;333625;333626;333627;333628;333629;333630;333631;333632;333633;333634 203372;203373;203374;203375;203376;203377;203378;203379;203380;203381;203382;203383;203384;203385 203381 14 RVVVSLGPQGALGVDSENCIQVVPPPVK Unmodified 2913.5746 0.57461207 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 44.254 42.725 3 0.0017196 20109 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 50.705 48.594 104510000 7823200 9563900 0 0 0 0 20654000 15545000 15171000 0 0 0 6814800 5801400 4662500 0 0 0 5991900 6985400 5501900 0 0 0 17949 145 17392 333635;333636;333637;333638;333639;333640;333641;333642;333643;333644;333645 203386 203386 1 RVVVTGLGMLSPVGNTVESTWK Unmodified 2329.2464 0.24640164 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 45.629 44.293 3 0.00010995 20840 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 76.889 69.529 112530000 10049000 5857400 5168900 0 0 0 0 0 0 0 0 0 18450000 16510000 13992000 0 0 0 13943000 13334000 15225000 0 0 0 17950 596 17393 333646;333647;333648;333649;333650;333651;333652;333653;333654 203387;203388;203389;203390;203391 203389 5 RVVYDFVNVIQGDATLNQALIK Unmodified 2475.3486 0.34855853 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 1 2 2 1 2 2 1 1 1 2 2 2 1 1 51.136 49.911 2;3 1.5461E-21 24382 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 197.15 192.52 402420000 33552000 32984000 28204000 1937500 0 0 22686000 25222000 17471000 23091000 19448000 11033000 19307000 21122000 18615000 7377500 10777000 0 33451000 34993000 29465000 0 4681400 7000800 17951 899 17394 333655;333656;333657;333658;333659;333660;333661;333662;333663;333664;333665;333666;333667;333668;333669;333670;333671;333672;333673;333674;333675;333676;333677;333678;333679;333680;333681;333682;333683;333684;333685 203392;203393;203394;203395;203396;203397;203398;203399;203400;203401;203402;203403;203404;203405 203400 14 RVWIQVVK Unmodified 1026.6338 0.63383493 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.291 22.037 2 0.0014387 7308 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 111.28 92.548 203930000 14174000 13542000 12123000 18140000 16737000 0 12477000 12921000 9760900 0 0 0 7270500 6898200 4747800 0 0 0 7279200 4862000 8799300 24151000 16776000 13271000 17952 1587 17395 333686;333687;333688;333689;333690;333691;333692;333693;333694;333695;333696;333697;333698;333699;333700;333701;333702 203406;203407 203406 2 RVWVSNPSWPNHK Unmodified 1605.8164 0.81644375 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 2 2 2 2 2 2 19.461 19.953 2;3 2.6874E-07 8091 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.24 109.85 556790000 57786000 56104000 54021000 0 0 748070 51350000 32140000 34399000 0 0 564460 36096000 36424000 35205000 0 0 0 57846000 50041000 54066000 0 0 0 17953 31 17396 333703;333704;333705;333706;333707;333708;333709;333710;333711;333712;333713;333714;333715;333716;333717;333718;333719;333720;333721;333722;333723;333724;333725 203408;203409;203410;203411;203412;203413;203414;203415;203416;203417;203418;203419 203408 12 RWDSDFLTLK Unmodified 1279.6561 0.65608651 1902 P77376 ydgJ Uncharacterized oxidoreductase YdgJ yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.009 36.329 2 0.00023377 17481 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.63 111.71 75875000 9161100 11693000 7851700 0 0 0 6047800 8329900 5358200 0 0 0 4706900 4396400 3952400 0 0 0 5416400 0 8962000 0 0 0 17954 1902 17397 333726;333727;333728;333729;333730;333731;333732;333733;333734;333735;333736 203420;203421 203421 2 RWLVVDEVTQPTK Unmodified 1569.8515 0.85149185 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 2 1 2 2 2 31.558 30.277 2;3 2.6567E-05 9961 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 75.669 73.035 30509000 0 0 0 0 0 0 0 0 0 2663500 1387100 934390 0 0 0 5210800 4848100 3530200 0 0 0 4043500 4231400 3659700 17955 935 17398 333737;333738;333739;333740;333741;333742;333743;333744;333745;333746;333747;333748;333749;333750 203422;203423;203424;203425;203426 203424 5 RWSDGLHQAVEAK Unmodified 1495.7532 0.75317479 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 16.034 16.651 2;3 1.5061E-07 4595 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 134.61 124.26 359730000 15980000 19965000 1717500 0 0 1594200 21105000 23692000 21901000 26254000 30619000 23167000 15199000 14641000 13824000 4184500 5068200 8724400 26354000 24584000 21846000 14510000 14357000 10444000 17956 1057 17399 333751;333752;333753;333754;333755;333756;333757;333758;333759;333760;333761;333762;333763;333764;333765;333766;333767;333768;333769;333770;333771;333772;333773;333774;333775;333776;333777;333778;333779;333780;333781;333782;333783 203427;203428;203429;203430;203431;203432;203433;203434;203435;203436;203437;203438;203439;203440;203441;203442;203443;203444;203445;203446 203437 19 RWYSQSGTPIVTVK Unmodified 1620.8624 0.86239089 94 P04825 pepN Aminopeptidase N yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 24.987 24.012 2;3 8.0497E-08 10527 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.39 122.92 199400000 21045000 19523000 20174000 0 0 0 21887000 24584000 7035000 0 0 0 13044000 11889000 11817000 0 0 0 17815000 13733000 16856000 0 0 0 17957 94 17400 333784;333785;333786;333787;333788;333789;333790;333791;333792;333793;333794;333795;333796;333797;333798;333799;333800;333801;333802;333803;333804;333805;333806 203447;203448;203449;203450;203451;203452;203453 203451 5 RYAEIADHLGLSAPGDR Unmodified 1839.9228 0.92275932 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 1 2 1 2 2 2 1 1 1 1 1 27.274 25.913 3;4 7.4549E-07 12114 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.95 72.683 170900000 19847000 26699000 0 6638800 4159700 5274200 27203000 17684000 25528000 2424000 6536800 5617500 8373400 0 4163600 0 1601600 0 0 0 0 2721900 3308700 3117900 17958 548 17401 333807;333808;333809;333810;333811;333812;333813;333814;333815;333816;333817;333818;333819;333820;333821;333822;333823;333824;333825;333826;333827;333828;333829;333830;333831 203454;203455;203456;203457;203458;203459;203460;203461;203462;203463 203456 1 RYAGVGDIIK Unmodified 1090.6135 0.61349341 820 P0ADY3 rplN 50S ribosomal protein L14 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 3 2 2 2 2 2 2 1 1 20.768 20.884 2;3 5.6834E-05 8304 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.1 95.989 1371400000 152560000 164230000 160480000 3200900 4052000 4653900 45938000 44984000 53376000 5974900 6488700 5744200 83256000 70553000 64313000 16113000 10869000 12935000 128630000 154240000 150170000 9696300 10640000 8289400 17959 820 17402 333832;333833;333834;333835;333836;333837;333838;333839;333840;333841;333842;333843;333844;333845;333846;333847;333848;333849;333850;333851;333852;333853;333854;333855;333856;333857;333858;333859;333860;333861;333862;333863;333864;333865;333866 203464;203465;203466;203467;203468;203469;203470;203471;203472;203473;203474;203475;203476;203477;203478;203479;203480;203481;203482;203483;203484;203485;203486;203487 203482 23 RYDFLAQMAGK Unmodified 1298.6441 0.64414162 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.461 31.093 3 0.023885 15126 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 44.543 37.414 55056000 3609600 5416000 0 237700 0 0 5819400 4965100 5438000 0 0 0 3313200 4806800 4558300 0 0 0 6638100 4887900 5366100 0 0 0 17960 1609 17403 333867;333868;333869;333870;333871;333872;333873;333874;333875;333876;333877;333878 203488;203489 203488 2 RYDQDPANQGIVDALK Unmodified 1801.8959 0.89587586 93 P04816 livK Leucine-specific-binding protein yes yes 0 0 1 By matching By MS/MS 1 1 27.998 27.016 3 0.03719 12302 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 27.589 23.487 14498000 0 8360800 6136800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17961 93 17404 333879;333880 203490 203490 1 RYEGEIIQSDRPGENILLFK Unmodified 2376.2438 0.24375911 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 1 1 2 2 2 1 2 2 1 36.505 34.846 3;4 1.9676E-18 16585 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.66 164.95 5603000000 1336800000 1217300000 1121700000 1731500 1144100 4155100 213630000 215580000 223740000 762490 1042200 0 149210000 128760000 132960000 0 0 0 244670000 321020000 287630000 1097500 0 0 17962 1264 17405 333881;333882;333883;333884;333885;333886;333887;333888;333889;333890;333891;333892;333893;333894;333895;333896;333897;333898;333899;333900;333901;333902;333903;333904;333905;333906;333907;333908;333909;333910 203491;203492;203493;203494;203495;203496;203497;203498;203499;203500;203501;203502;203503;203504;203505;203506;203507;203508;203509;203510;203511;203512;203513 203507 23 RYEMLDAIQPQMATMFR Unmodified 2099.9955 0.99547203 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 49.083 47.664 3 8.022E-05 19082 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 62.658 61.881 59146000 0 0 3345400 0 0 0 3212500 0 0 4328200 5487400 3650700 5690300 4302600 4380400 0 0 0 5838700 6504500 6017400 2966500 3421800 0 17963 1781 17406 333911;333912;333913;333914;333915;333916;333917;333918;333919;333920;333921;333922;333923 203514;203515 203514 2 RYGADIYDIYGQVIEGQGR Unmodified 2172.06 0.05998108 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 44.734 42.7 3 5.5353E-07 17043 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 101.64 97.976 12980000 0 0 0 0 0 0 0 0 0 0 3540400 5554100 0 0 0 0 0 0 3885900 0 0 0 0 0 17964 1877 17407 333924;333925;333926 203516 203516 1 RYGAHGTSHFYVTQEAAK Unmodified 2021.9708 0.97077214 224 P0A6A3 ackA Acetate kinase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 1 1 2 2 2 12.226 13.049 3;4 1.4445E-14 3783 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 154.49 147.45 368110000 19803000 0 8594600 0 0 0 55936000 43981000 40862000 0 0 0 28375000 27819000 23076000 0 0 0 39016000 42724000 37923000 0 0 0 17965 224 17408 333927;333928;333929;333930;333931;333932;333933;333934;333935;333936;333937;333938;333939;333940;333941;333942;333943;333944 203517;203518;203519;203520;203521;203522 203518 4 RYGFIYVNK Unmodified 1158.6186 0.61857879 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.66 22.116 2 2.021E-05 9321 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 158.36 147.65 257440000 17724000 20493000 21520000 0 0 0 23640000 23257000 27082000 0 0 0 18399000 21095000 21828000 0 0 0 19179000 21592000 21632000 0 0 0 17966 1956 17409 333945;333946;333947;333948;333949;333950;333951;333952;333953;333954;333955;333956 203523;203524;203525;203526;203527;203528;203529;203530;203531;203532;203533 203528 11 RYGIEKPYEK Unmodified 1281.6717 0.67173657 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.83 12.675 2 0.07334 3550 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 61.78 46.629 75864000 9232600 0 10023000 0 0 0 4767500 4114800 5371200 0 0 0 5620500 6259900 4083800 0 0 0 10591000 7332600 8467600 0 0 0 17967 638 17410 333957;333958;333959;333960;333961;333962;333963;333964;333965;333966;333967 203534 203534 1 RYIDFSVIQSLR Unmodified 1495.8147 0.81471242 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 1 1 1 1 1 1 1 24.807 23.752 4 0.16461 10887 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 13.964 8.7865 51255000 3688800 3648900 0 0 0 0 5717200 16220000 4948100 0 0 0 3026100 2028700 2969100 0 0 0 2418200 2859600 3730200 0 0 0 17968 1353 17411 333968;333969;333970;333971;333972;333973;333974;333975;333976;333977;333978;333979 203535 203535 1 RYILAPK Unmodified 859.52797 0.52797287 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.997 14.595 2 0.0044379 3878 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 107.55 98.869 445000000 69760000 39670000 30383000 2256000 2026500 2737400 21765000 18959000 16855000 4788000 3003400 3841200 22007000 21528000 21619000 6563500 4258000 5312700 42788000 47847000 37695000 6054900 6279700 7006100 17969 1620 17412 333980;333981;333982;333983;333984;333985;333986;333987;333988;333989;333990;333991;333992;333993;333994;333995;333996;333997;333998;333999;334000;334001;334002;334003 203536;203537;203538;203539;203540;203541;203542;203543;203544 203541 9 RYLGTIMSPWAAK Unmodified 1492.7861 0.78605483 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 33.829 32.341 2;3 5.7275E-06 15760 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.663 86.583 135930000 25526000 21349000 22301000 0 0 0 18793000 18674000 17254000 0 0 0 2690800 2944700 3325900 0 0 0 3070500 0 0 0 0 0 17970 757 17413 334004;334005;334006;334007;334008;334009;334010;334011;334012;334013;334014;334015;334016;334017;334018;334019 203545;203546;203547;203548;203549 203546 5 RYPEGTK Unmodified 849.43447 0.43446642 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.6666 8.2772 2 0.00083668 916 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 148.04 121.93 1890700000 1499400 1430600 1698900 25386000 26493000 21673000 141100000 127250000 123470000 64053000 54723000 62354000 170660000 155260000 138920000 52965000 65144000 92206000 151500000 149250000 147850000 34598000 44804000 36420000 17971 990 17414 334020;334021;334022;334023;334024;334025;334026;334027;334028;334029;334030;334031;334032;334033;334034;334035;334036;334037;334038;334039;334040;334041;334042;334043 203550;203551;203552;203553;203554;203555;203556;203557;203558;203559;203560 203555 11 RYPFLTESLAR Unmodified 1351.7248 0.72483478 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 2 2 1 2 1 2 2 2 30.981 29.376 2;3 5.0783E-07 11205 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 128.03 123.69 389630000 0 0 0 0 685030 1029600 9778800 18780000 0 85640000 72344000 81474000 20396000 0 21711000 0 4062100 3507700 9960600 14186000 5947400 12939000 12725000 14466000 17972 1088 17415 334044;334045;334046;334047;334048;334049;334050;334051;334052;334053;334054;334055;334056;334057;334058;334059;334060;334061;334062;334063;334064;334065;334066;334067;334068;334069;334070;334071 203561;203562;203563;203564;203565;203566;203567;203568;203569;203570;203571;203572;203573;203574;203575;203576;203577;203578;203579;203580 203573 20 RYTDMPMLVMLEER Unmodified 1782.8467 0.84668253 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 47.853 46.626 3 6.6552E-06 18391 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 84.508 67.429 68291000 0 0 0 0 0 0 0 0 0 3622600 3685000 0 0 0 6045900 0 1639200 3129800 0 10278000 11418000 10801000 9684000 7987000 17973 205 17416 334072;334073;334074;334075;334076;334077;334078;334079;334080;334081 203581;203582;203583;203584;203585;203586;203587 203582 6 RYTPNVADATEAQIQQATK Unmodified 2104.0549 0.054895702 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 2 2 2 2 2 2 2 1 1 1 1 1 27.563 25.997 2;3 1.2811E-13 9870 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 167.88 154.48 223370000 0 0 0 0 1416800 3110400 31542000 30601000 31679000 22534000 18757000 18446000 23617000 13958000 18994000 0 0 0 0 0 0 3560600 2497800 2652400 17974 664 17417 334082;334083;334084;334085;334086;334087;334088;334089;334090;334091;334092;334093;334094;334095;334096;334097;334098;334099;334100;334101;334102 203588;203589;203590;203591;203592;203593;203594 203589 7 RYVESQVYQGVVENLASEQAAR Unmodified 2495.2405 0.24046464 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.035 35.495 3 4.4283E-28 14332 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 184.68 183.02 331080000 6924500 8201000 10401000 5474000 0 0 0 26134000 17931000 21185000 17919000 0 18780000 19300000 18820000 5199100 4956000 3291300 32289000 32819000 30248000 24736000 11991000 14478000 17975 644 17418 334103;334104;334105;334106;334107;334108;334109;334110;334111;334112;334113;334114;334115;334116;334117;334118;334119;334120;334121;334122 203595;203596;203597;203598;203599 203595 5 SAAASGWDFSSR Unmodified 1240.5473 0.54726434 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.468 26.32 2 1.1353E-06 11996 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 180.09 180.09 391740000 74082000 79290000 69758000 0 0 0 31254000 26501000 25169000 0 0 0 13116000 10939000 10680000 0 0 0 15266000 17779000 17907000 0 0 0 17976 1091 17419 334123;334124;334125;334126;334127;334128;334129;334130;334131;334132;334133;334134 203600;203601;203602;203603;203604;203605;203606;203607;203608;203609;203610 203605 8 SAACVVMPMAGR Oxidation (M) 1264.5726 0.57263293 2000 yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 2 23.565 22.843 2 0.017594 9899 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 59.8 58.102 274100000 16768000 16581000 13758000 0 0 0 17457000 14356000 17170000 0 0 0 21362000 21610000 19103000 0 0 0 20073000 52032000 43826000 0 0 0 + 17977 2000 17420 334135;334136;334137;334138;334139;334140;334141;334142;334143;334144;334145;334146;334147;334148 203611;203612 203611 620 2 SAADRDAAFEK Unmodified 1179.552 0.55201537 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 1 By MS/MS 1 12.002 12.105 2 0.069104 2714 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 63.694 51.925 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17978 73 17421 334149 203613 203613 1 SAAGCTIK Unmodified 806.39564 0.39563807 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 3 2 2 1 1 2 1 2 1 10.41 11.146 2 0.013575 2545 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 73.248 35.603 3943100000 662000000 741310000 644090000 3804100 0 0 234200000 236600000 277030000 0 0 0 222310000 205720000 178420000 2158400 0 2129400 529760000 0 823690 0 0 2769200 17979 1444 17422 334150;334151;334152;334153;334154;334155;334156;334157;334158;334159;334160;334161;334162;334163;334164;334165;334166;334167;334168;334169;334170;334171;334172 203614;203615;203616;203617;203618;203619;203620;203621;203622;203623 203614 10 SAAGNYVFNER Unmodified 1226.568 0.56799978 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 21.794 21.788 2 9.7714E-20 9082 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 234.67 205.58 2450200000 196540000 177050000 142310000 0 0 0 256180000 245980000 270420000 0 0 578110 157810000 158340000 175970000 0 0 0 210550000 236030000 222400000 0 0 0 17980 1505 17423 334173;334174;334175;334176;334177;334178;334179;334180;334181;334182;334183;334184;334185 203624;203625;203626;203627;203628;203629;203630;203631;203632;203633 203626 10 SAASVAHWQK Unmodified 1083.5461 0.54614213 1268 P25718 malS Alpha-amylase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 12.075 12.891 2 1.4307E-05 3656 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.31 108.22 27790000 0 0 0 0 0 0 7467300 0 5041600 0 0 0 0 0 0 0 0 0 8500100 6780700 0 0 0 0 17981 1268 17424 334186;334187;334188;334189;334190 203634;203635 203635 2 SAAYAAR Unmodified 708.35549 0.35548781 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.453 11.215 2 0.0021402 2444 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 117.56 87.117 1204900000 109750000 102540000 102620000 0 0 0 157520000 157430000 151380000 0 0 13421000 99919000 97316000 73709000 0 0 0 0 50815000 88463000 0 0 0 17982 388 17425 334191;334192;334193;334194;334195;334196;334197;334198;334199;334200;334201;334202 203636;203637;203638;203639;203640 203638 4 SAAYDFTHELLTTLEVDDPAMVAK Unmodified 2636.268 0.26798452 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.019 53.54 3 0.00020759 25319 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 68.552 65.975 503890000 100490000 112960000 0 0 2130800 0 38040000 35664000 28683000 0 3263800 0 32898000 21197000 30578000 0 0 0 27095000 36974000 33917000 0 0 0 17983 748 17426 334203;334204;334205;334206;334207;334208;334209;334210;334211;334212;334213;334214;334215 203641 203641 1 SACIVVGVFEPR Unmodified 1332.686 0.68600643 1725 P68767 pepA Cytosol aminopeptidase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 40.198 38.585 2 0.011323 18714 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 72.652 67.094 39588000 8893800 8791700 8336200 0 0 425920 0 0 6470000 0 0 0 0 0 0 0 0 0 0 0 6670200 0 0 0 17984 1725 17427 334216;334217;334218;334219;334220;334221 203642;203643 203642 2 SACTYVGASR Unmodified 1070.4815 0.48149296 1623 P60560 guaC GMP reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.32 13.153 2 0.00023669 3797 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 117.89 113.21 1175800000 98531000 106090000 104960000 0 0 0 90520000 79527000 83175000 0 0 0 96155000 92682000 89006000 0 0 0 109070000 113090000 112990000 0 0 0 17985 1623 17428 334222;334223;334224;334225;334226;334227;334228;334229;334230;334231;334232;334233 203644;203645;203646 203645 3 SADASLADMNDPSLITVR Unmodified 1874.9044 0.90439164 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.776 40.825 2 4.7016E-29 19317 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 257.52 240.38 235980000 0 0 0 3817500 0 3899900 25747000 19929000 24972000 6345700 7263300 7462300 19752000 14645000 15623000 0 0 0 26410000 23577000 24960000 4046300 3823000 3704900 17986 201 17429 334234;334235;334236;334237;334238;334239;334240;334241;334242;334243;334244;334245;334246;334247;334248;334249;334250 203647;203648;203649;203650;203651;203652;203653;203654;203655;203656;203657;203658;203659 203657 13 SADDITAMWK Unmodified 1136.5172 0.51720977 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 36.973 35.298 2 0.00048825 16366 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 99.802 87.446 509230000 0 7574500 9163500 0 0 0 56147000 54013000 59101000 0 0 0 69609000 68048000 67658000 0 0 0 42363000 35748000 39803000 0 0 0 17987 1947 17430 334251;334252;334253;334254;334255;334256;334257;334258;334259;334260;334261 203660;203661;203662;203663;203664 203663 5 SADDSVSAQEK Unmodified 1135.4993 0.4993111 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.779 11.393 2 8.4424E-20 2180 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 236.56 225.85 1083500000 54255000 64803000 51640000 0 990330 829600 74982000 77535000 76274000 7926900 8413600 7860200 106330000 107650000 103350000 21930000 19811000 21673000 101880000 86519000 88878000 0 0 0 17988 297 17431 334262;334263;334264;334265;334266;334267;334268;334269;334270;334271;334272;334273;334274;334275;334276;334277;334278;334279;334280;334281 203665;203666;203667;203668;203669;203670;203671;203672 203666 8 SADFLNTAK Unmodified 965.48181 0.48181054 470 P0A8X2 yceI Protein YceI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 3 3 3 3 2 3 3 2 18.136 18.771 2 9.7622E-05 8459 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 136.75 99.194 6264300000 102310000 256730000 78037000 0 0 0 686440000 619050000 591990000 0 0 0 931570000 859500000 178260000 0 0 0 879040000 923030000 158350000 0 0 0 17989 470 17432 334282;334283;334284;334285;334286;334287;334288;334289;334290;334291;334292;334293;334294;334295;334296;334297;334298;334299;334300;334301;334302;334303;334304;334305;334306;334307;334308;334309;334310;334311;334312;334313 203673;203674;203675;203676;203677;203678;203679;203680;203681;203682;203683;203684;203685;203686;203687;203688;203689;203690;203691;203692;203693;203694;203695;203696;203697 203678 25 SADFSPLAR Unmodified 962.48214 0.48214489 1098 P14900 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.888 23.827 2 4.2936E-05 10076 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.84 129.97 427790000 41861000 39592000 37589000 0 0 0 37089000 37921000 37767000 758590 0 0 27665000 30221000 23137000 0 0 0 38719000 37514000 35643000 1192800 0 1115400 17990 1098 17433 334314;334315;334316;334317;334318;334319;334320;334321;334322;334323;334324;334325;334326;334327;334328 203698;203699 203699 2 SADIHYQVSVDCK Unmodified 1520.6929 0.6929423 1411 P33219 yebF Protein YebF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 1 18.95 19.472 2;3 1.9914E-07 7315 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 153.34 146.06 358660000 41260000 39359000 31909000 2433500 3209000 2948000 39725000 31346000 28217000 1081100 0 0 15114000 11410000 14576000 0 0 0 37235000 31348000 26645000 0 0 847880 17991 1411 17434 334329;334330;334331;334332;334333;334334;334335;334336;334337;334338;334339;334340;334341;334342;334343;334344;334345;334346;334347;334348;334349;334350;334351;334352;334353;334354;334355;334356;334357;334358;334359 203700;203701;203702;203703;203704;203705;203706;203707;203708;203709;203710;203711;203712;203713;203714;203715;203716;203717;203718;203719;203720;203721;203722;203723 203715 23 SADIISAR Unmodified 831.44503 0.4450311 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.801 16.277 2 0.00030917 4687 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 146.54 81.739 90555000 0 0 0 3371000 3787800 4496900 4549500 5967600 0 10941000 11904000 10865000 5911700 0 0 0 0 0 0 0 0 9875400 9689200 9196600 17992 819 17435 334360;334361;334362;334363;334364;334365;334366;334367;334368;334369;334370;334371 203724;203725;203726;203727;203728;203729 203724 6 SADIQMR Unmodified 819.39089 0.39088704 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 12.984 13.743 2 0.00029567 4136 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 158.53 113.92 262600000 0 39247000 37644000 0 0 0 39450000 12956000 39694000 0 0 4096200 0 23517000 27303000 0 0 0 38690000 0 0 0 0 0 17993 1845 17436 334372;334373;334374;334375;334376;334377;334378;334379;334380 203730;203731;203732;203733;203734 203732 5 SADKAPLAAEAMGIIAPR Unmodified 1780.9506 0.95055397 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 40.356 38.72 2;3 3.717E-10 18780 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.11 127.04 1487800000 117770000 104500000 104630000 5350000 6023600 5378200 99042000 102340000 113850000 11771000 9417500 9555000 104200000 113480000 100710000 4794600 4218300 5709100 135500000 140930000 140390000 0 23504000 24765000 17994 651 17437 334381;334382;334383;334384;334385;334386;334387;334388;334389;334390;334391;334392;334393;334394;334395;334396;334397;334398;334399;334400;334401;334402;334403;334404;334405;334406;334407;334408;334409;334410;334411;334412;334413;334414;334415;334416;334417 203735;203736;203737;203738;203739;203740;203741;203742;203743;203744;203745;203746;203747;203748;203749;203750;203751;203752;203753;203754;203755;203756;203757;203758;203759;203760;203761;203762 203747 25 SADLISIGPMLQGMR Unmodified 1587.8113 0.8112833 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 51.65 50.404 2;3 6.2692E-17 23582 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 190.86 177.9 2358100000 144840000 147700000 133410000 1510400 0 1986300 233050000 227470000 218970000 16884000 17363000 17756000 303370000 29559000 263210000 2813600 1896600 0 194090000 189390000 207370000 1837100 1804900 1793800 17995 539 17438 334418;334419;334420;334421;334422;334423;334424;334425;334426;334427;334428;334429;334430;334431;334432;334433;334434;334435;334436;334437;334438;334439;334440;334441;334442;334443;334444;334445;334446;334447;334448;334449;334450;334451;334452;334453;334454 203763;203764;203765;203766;203767;203768;203769;203770;203771;203772;203773;203774;203775;203776;203777;203778;203779;203780;203781;203782;203783;203784;203785;203786;203787;203788 203786 26 SADLLAILK Unmodified 942.57498 0.57498264 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.455 44.856 2 0.00028369 21820 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 119.27 87.696 718520000 100150000 113320000 102250000 1000500 1010200 1150000 95981000 87953000 76623000 1172300 1579600 1466900 14255000 13512000 14615000 0 0 0 28879000 34213000 29387000 0 0 0 17996 1174 17439 334455;334456;334457;334458;334459;334460;334461;334462;334463;334464;334465;334466;334467;334468;334469;334470;334471;334472 203789;203790;203791;203792;203793;203794;203795;203796;203797;203798;203799;203800 203793 12 SADSEYPYR Unmodified 1086.4618 0.46180338 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.645 15.399 2 1.0067E-05 5227 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.68 163.27 914200000 88331000 93672000 94276000 0 758270 492780 100000000 95671000 101840000 0 713420 0 53368000 47386000 39221000 0 0 0 70351000 64570000 63543000 0 0 0 17997 1100 17440 334473;334474;334475;334476;334477;334478;334479;334480;334481;334482;334483;334484;334485;334486;334487 203801;203802;203803;203804;203805;203806;203807;203808;203809;203810 203801 10 SADSSYLAGPDDIYVSPSQIR Unmodified 2240.0597 0.059706309 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 43.316 41.565 2;3 9.4294E-28 20558 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 255.85 253.22 924630000 137240000 120380000 108450000 10397000 12067000 12127000 33611000 50888000 49599000 55118000 56093000 60021000 30523000 24982000 25897000 0 0 0 40071000 39226000 42548000 5385500 6081700 3926200 17998 982 17441 334488;334489;334490;334491;334492;334493;334494;334495;334496;334497;334498;334499;334500;334501;334502;334503;334504;334505;334506;334507;334508;334509;334510;334511;334512;334513;334514;334515;334516;334517;334518;334519;334520;334521;334522;334523;334524;334525;334526;334527;334528 203811;203812;203813;203814;203815;203816;203817;203818;203819;203820;203821;203822;203823;203824 203817 14 SAEALQWDLSFR Unmodified 1421.6939 0.69392858 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 47.326 45.849 2 2.5639E-05 16256 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 118.4 100.97 46307000 0 0 8125700 0 0 5155200 0 5576300 9830500 0 0 0 0 0 0 0 0 0 8986500 8632400 0 0 0 0 17999 1183 17442 334529;334530;334531;334532;334533;334534 203825;203826;203827 203826 3 SAECTTAYNNALK Unmodified 1441.6507 0.65074314 805 P0ADT2 ygiB UPF0441 protein YgiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.745 17.242 2 1.6E-12 6321 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 193.82 192.41 213760000 9070700 9153200 8615300 0 0 0 27667000 29918000 21461000 10871000 4056300 2789900 13129000 14588000 10965000 2806900 0 917290 14503000 14115000 17047000 0 0 2092200 18000 805 17443 334535;334536;334537;334538;334539;334540;334541;334542;334543;334544;334545;334546;334547;334548;334549;334550;334551;334552 203828;203829;203830;203831;203832;203833;203834;203835;203836;203837;203838;203839;203840 203830 13 SAEELVFVR Unmodified 1048.5553 0.55530983 1906 P77444 sufS Cysteine desulfurase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 33.131 31.528 2 0.0019885 14836 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.195 86.002 85314000 16536000 0 14979000 3794800 4198200 4280600 20732000 20794000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18001 1906 17444 334553;334554;334555;334556;334557;334558;334559;334560;334561 203841;203842;203843;203844;203845 203845 2 SAEHEVSLQSAK Unmodified 1284.631 0.63099397 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 1 2 2 2 2 2 2 11.778 12.625 2;3 8.7576E-40 3267 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 285.83 239.37 1106400000 78365000 102660000 91223000 0 410540 0 109700000 103070000 63781000 0 0 0 84728000 97761000 99002000 0 0 0 93805000 89372000 92506000 0 0 0 18002 253 17445 334562;334563;334564;334565;334566;334567;334568;334569;334570;334571;334572;334573;334574;334575;334576;334577;334578;334579;334580;334581;334582;334583;334584;334585 203846;203847;203848;203849;203850;203851;203852;203853;203854;203855;203856;203857 203856 12 SAEHVLTMLNEHEVK Unmodified 1735.8563 0.85631924 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 2 2 3 3 3 1 1 3 3 3 3 3 3 1 1 23.794 22.938 2;3;4 2.0389E-45 10069 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 274.59 255.13 9714400000 1349800000 1317600000 1169700000 6647500 5675700 5387900 601170000 689900000 660970000 2699300 2564600 0 610330000 617870000 531400000 0 0 0 766550000 675260000 694560000 0 3074900 3289200 18003 508 17446 334586;334587;334588;334589;334590;334591;334592;334593;334594;334595;334596;334597;334598;334599;334600;334601;334602;334603;334604;334605;334606;334607;334608;334609;334610;334611;334612;334613;334614;334615;334616;334617;334618;334619;334620;334621;334622;334623;334624;334625;334626;334627;334628;334629;334630;334631 203858;203859;203860;203861;203862;203863;203864;203865;203866;203867;203868;203869;203870;203871;203872;203873;203874;203875;203876;203877;203878;203879;203880;203881;203882;203883;203884;203885;203886;203887;203888;203889;203890;203891;203892;203893 203868 36 SAELLDTMAHDYR Unmodified 1520.6929 0.6929423 814 P0ADW3 yhcB Inner membrane protein YhcB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 30.513 29.057 2;3 5.747E-40 13791 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 273.44 243.97 2281500000 68584000 63537000 51718000 14228000 16549000 20367000 268490000 222800000 248980000 61081000 68138000 61034000 170730000 153180000 159410000 7770100 5689800 6714500 166310000 186080000 190630000 27226000 18801000 23493000 18004 814 17447 334632;334633;334634;334635;334636;334637;334638;334639;334640;334641;334642;334643;334644;334645;334646;334647;334648;334649;334650;334651;334652;334653;334654;334655;334656;334657;334658;334659;334660;334661;334662;334663;334664;334665;334666;334667;334668;334669;334670;334671;334672;334673;334674;334675;334676;334677 203894;203895;203896;203897;203898;203899;203900;203901;203902;203903;203904;203905;203906;203907;203908;203909;203910;203911;203912;203913;203914;203915;203916;203917;203918;203919;203920;203921;203922;203923;203924;203925;203926;203927;203928;203929;203930;203931 203908 38 SAEQLAQAWK Unmodified 1130.572 0.57202253 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 25.506 24.52 2 4.9404E-05 10822 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.27 132.28 435480000 135730000 140350000 114670000 0 0 0 0 5434600 0 0 0 0 3702700 5728400 3839500 0 0 0 8174700 9048600 8799100 0 0 0 18005 1412 17448 334678;334679;334680;334681;334682;334683;334684;334685;334686;334687 203932;203933;203934 203933 2 SAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFK Unmodified 3986.0095 0.009531999 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.956 53.504 5 2.6927E-17 26501 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 118.3 116.96 1120000000 148790000 161260000 154350000 1818700 0 1506200 93077000 76123000 68460000 0 0 2144200 68548000 58130000 55334000 0 0 0 73567000 83793000 73095000 0 0 0 18006 1830 17449 334688;334689;334690;334691;334692;334693;334694;334695;334696;334697;334698;334699;334700;334701;334702 203935;203936;203937;203938;203939;203940 203935 6 SAESSLK Unmodified 720.36538 0.3653838 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 9.6865 10.54 2 0.0073613 2317 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 91.626 71.78 1191700000 77157000 0 87264000 0 0 0 59087000 53162000 59464000 0 0 0 141540000 146290000 77297000 0 0 0 174460000 148190000 167830000 0 0 0 18007 1487 17450 334703;334704;334705;334706;334707;334708;334709;334710;334711;334712;334713 203941;203942;203943;203944;203945;203946;203947;203948;203949;203950 203948 10 SAETLSGGEAQR Unmodified 1204.5684 0.56839372 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.94 12.547 2 1.0449E-09 2702 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 179.8 165.65 327530000 20341000 24457000 19056000 2199200 3276400 1842400 14816000 14756000 15154000 5896800 5897200 5037300 13720000 10515000 8822100 35064000 40880000 30710000 19192000 12628000 13097000 3548200 3873300 2748100 18008 222 17451 334714;334715;334716;334717;334718;334719;334720;334721;334722;334723;334724;334725;334726;334727;334728;334729;334730;334731;334732;334733;334734;334735;334736;334737 203951;203952;203953;203954 203952 4 SAFDEFSTPAAR Unmodified 1297.5939 0.59388018 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 1 1 1 1 1 1 31.625 30.225 2;3 3.9212E-08 14044 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.79 157.39 3524600000 843770000 820080000 692440000 2004100 1899500 1874100 259340000 248690000 263420000 0 0 0 43790000 45407000 44204000 0 0 0 83306000 90255000 84142000 0 0 0 18009 703 17452 334738;334739;334740;334741;334742;334743;334744;334745;334746;334747;334748;334749;334750;334751;334752;334753;334754;334755;334756;334757 203955;203956;203957;203958;203959;203960;203961;203962;203963;203964;203965;203966;203967 203964 13 SAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAAR Unmodified 4541.2544 0.25436393 1425 P33593 nikD Nickel import ATP-binding protein NikD yes yes 0 0 2 By MS/MS By matching By matching 1 1 1 48.944 47.463 4 0.15757 18771 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 3.0239 2.8595 39287000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10633000 15939000 12716000 18010 1425 17453 334758;334759;334760 203968 203968 1 SAGGAFANINRPVSGPTHEK Unmodified 2009.0079 0.00788593 1957 Q46845 yghU Disulfide-bond oxidoreductase YghU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 3 5 3 3 3 3 3 4 3 16.094 16.904 2;3;4 1.4281E-67 5901 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 323.77 318.49 2107600000 378530000 344610000 370410000 0 0 0 174280000 195540000 202450000 0 0 0 61999000 49037000 52067000 0 0 0 105340000 84848000 88532000 0 0 0 18011 1957 17454 334761;334762;334763;334764;334765;334766;334767;334768;334769;334770;334771;334772;334773;334774;334775;334776;334777;334778;334779;334780;334781;334782;334783;334784;334785;334786;334787;334788;334789;334790;334791;334792;334793;334794;334795;334796;334797;334798;334799 203969;203970;203971;203972;203973;203974;203975;203976;203977;203978;203979;203980;203981;203982;203983;203984;203985;203986;203987;203988;203989 203986 21 SAGGIVLTGSAAAK Unmodified 1201.6667 0.6666512 241 P0A6F9 groS 10 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 1 4 3 3 1 4 4 5 3 4 4 22.982 22.742 2;3 7.6406E-13 8870 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 180.19 158.74 10870000000 1147500000 1021800000 817520000 0 0 0 1031800000 982280000 1021000000 1224000 0 0 765030000 628380000 593290000 0 0 0 946360000 956220000 957500000 0 0 0 18012 241 17455 334800;334801;334802;334803;334804;334805;334806;334807;334808;334809;334810;334811;334812;334813;334814;334815;334816;334817;334818;334819;334820;334821;334822;334823;334824;334825;334826;334827;334828;334829;334830;334831;334832;334833;334834;334835;334836;334837;334838;334839;334840;334841;334842;334843;334844;334845;334846;334847 203990;203991;203992;203993;203994;203995;203996;203997;203998;203999;204000;204001;204002;204003;204004;204005;204006;204007;204008;204009;204010;204011;204012;204013;204014;204015;204016;204017;204018;204019;204020;204021;204022;204023;204024;204025;204026;204027;204028;204029;204030;204031;204032;204033;204034;204035;204036;204037;204038;204039;204040;204041;204042;204043;204044;204045;204046;204047;204048;204049;204050;204051;204052;204053;204054;204055;204056;204057;204058;204059;204060;204061;204062;204063;204064 203991 62 SAGTYVQIVAR Unmodified 1163.6299 0.62987176 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 26.066 24.954 2 2.7108E-10 7699 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 188.98 177.27 6082500000 718460000 697730000 657210000 34735000 35378000 33113000 259660000 250620000 269650000 61137000 50607000 50082000 374170000 292530000 280040000 42546000 32987000 36952000 569650000 562040000 568460000 71346000 65826000 67541000 18013 1620 17456 334848;334849;334850;334851;334852;334853;334854;334855;334856;334857;334858;334859;334860;334861;334862;334863;334864;334865;334866;334867;334868;334869;334870;334871;334872;334873;334874 204065;204066;204067;204068;204069;204070;204071;204072;204073;204074;204075;204076;204077;204078;204079;204080;204081;204082;204083;204084;204085;204086;204087;204088;204089 204066 24 SAHVAMALYPLSAFR Unmodified 1632.8446 0.84463234 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 42.439 40.85 2;3 2.2796E-11 20026 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 162.93 153.74 245130000 88915000 74832000 77617000 1255000 1388900 1126900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18014 1914 17457 334875;334876;334877;334878;334879;334880;334881;334882;334883 204090;204091;204092;204093;204094 204091 5 SAIGFDR Unmodified 764.3817 0.38170256 1033 P0C054 ibpA Small heat shock protein IbpA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.902 18.322 2 0.0035704 5534 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 107.43 83.457 213510000 5725700 0 4749100 6016900 5287200 4742800 14129000 15471000 14656000 21600000 17703000 18749000 8276800 6946500 6112100 1501600 2153500 2521300 12954000 13135000 10876000 6933700 6290500 6976000 18015 1033 17458 334884;334885;334886;334887;334888;334889;334890;334891;334892;334893;334894;334895;334896;334897;334898;334899;334900;334901;334902;334903;334904;334905;334906 204095;204096;204097;204098;204099;204100;204101 204097 7 SAIGLGLLLSEGIGDTLR Unmodified 1784.0044 0.0043636815 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 2 2 2 2 2 2 55.238 53.788 2;3 5.2079E-45 26492 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 256.95 251.1 768650000 75348000 75336000 72069000 2226400 1952900 1885300 56721000 51476000 29835000 0 0 0 69204000 61923000 53840000 0 0 0 79627000 73910000 63294000 0 0 0 18016 1649 17459 334907;334908;334909;334910;334911;334912;334913;334914;334915;334916;334917;334918;334919;334920;334921;334922;334923;334924;334925;334926;334927;334928;334929;334930;334931;334932 204102;204103;204104;204105;204106;204107;204108;204109;204110;204111;204112 204103 11 SAIGYIVEALR Unmodified 1190.6659 0.66592292 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.266 47.901 2 6.2062E-08 23875 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 175.91 148.28 384500000 47312000 50533000 43136000 0 0 0 31696000 30851000 32873000 0 0 0 27680000 24160000 28152000 0 0 0 26498000 18725000 22889000 0 0 0 18017 1508 17460 334933;334934;334935;334936;334937;334938;334939;334940;334941;334942;334943;334944 204113;204114;204115;204116;204117;204118;204119;204120;204121;204122;204123;204124 204113 12 SAIPMGCVLTLPATGSESNAGAVISR Unmodified 2558.2833 0.28325743 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 49.457 48.095 2;3 3.1156E-30 22644 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 241.08 235.18 779620000 54454000 43217000 43926000 0 0 847950 76509000 77600000 74661000 0 0 0 77295000 73089000 79881000 0 0 0 58966000 63003000 56168000 0 0 0 18018 1959 17461 334945;334946;334947;334948;334949;334950;334951;334952;334953;334954;334955;334956;334957;334958;334959;334960;334961;334962;334963;334964;334965;334966;334967;334968;334969 204125;204126;204127;204128;204129;204130;204131;204132;204133;204134;204135;204136;204137;204138;204139;204140 204136 16 SAIVEVLSPGQRPTK Unmodified 1580.8886 0.88860564 1543 P39829 garD D-galactarate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 24.433 23.5 2;3 1.1137E-06 10141 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.673 50.604 289070000 32798000 33563000 28538000 762370 0 0 25647000 29896000 20820000 0 0 0 23205000 18423000 22484000 0 0 0 20926000 14930000 17076000 0 0 0 18019 1543 17462 334970;334971;334972;334973;334974;334975;334976;334977;334978;334979;334980;334981;334982;334983;334984;334985;334986;334987;334988;334989;334990;334991;334992;334993;334994 204141;204142;204143;204144;204145;204146;204147;204148;204149;204150;204151 204148 11 SAIYPLTPEQDAAAR Unmodified 1601.8049 0.80493559 309 P0A744 msrA Peptide methionine sulfoxide reductase MsrA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 2 1 31.209 29.6 2;3 5.6479E-10 14261 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 190.26 182.86 1310900000 190910000 12560000 208500000 16743000 17457000 12733000 124830000 119110000 116230000 34240000 29498000 32146000 60443000 58521000 56246000 0 0 0 61007000 67595000 57551000 10255000 13443000 10926000 18020 309 17463 334995;334996;334997;334998;334999;335000;335001;335002;335003;335004;335005;335006;335007;335008;335009;335010;335011;335012;335013;335014;335015;335016;335017;335018;335019;335020;335021;335022;335023;335024;335025;335026;335027;335028;335029;335030;335031;335032 204152;204153;204154;204155;204156;204157;204158;204159;204160;204161;204162;204163;204164;204165;204166;204167;204168;204169;204170;204171;204172;204173 204156 22 SALAEAEVEYYDK Unmodified 1486.6828 0.68275477 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 32.484 31.308 2 0.022906 15041 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 51.013 41.825 24008000 5949700 7762000 0 0 0 0 0 0 0 0 0 0 5374400 0 4922000 0 0 0 0 0 0 0 0 0 18021 58 17464 335033;335034;335035;335036 204174 204174 1 SALAQEATQQHGTQGFAVLSYVYEHEKR Unmodified 3147.5374 0.53737494 296 P0A6Z6 nikR Nickel-responsive regulator yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 36.748 35.136 4;5 7.8407E-05 12443 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 66.012 65.19 94956000 0 0 0 5129600 7861000 8691100 0 0 0 10447000 8027100 10469000 0 0 0 4297400 7092700 4739700 0 0 0 15253000 0 12949000 18022 296 17465 335037;335038;335039;335040;335041;335042;335043;335044;335045;335046;335047;335048;335049 204175;204176;204177;204178;204179;204180;204181;204182;204183;204184;204185 204183 11 SALAYLEK Unmodified 893.48583 0.48583328 755 P0ACX3 ydhR Putative monooxygenase YdhR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 25.425 24.363 1;2 0.014522 10469 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 71.692 48.169 304460000 59653000 60255000 53693000 825740 0 0 15788000 16931000 13350000 0 0 0 17122000 18408000 17434000 0 0 0 10251000 10497000 10251000 0 0 0 18023 755 17466 335050;335051;335052;335053;335054;335055;335056;335057;335058;335059;335060;335061;335062;335063;335064;335065 204186;204187;204188;204189;204190;204191;204192;204193;204194 204192 8 SALDSQQGEPWQTIR Unmodified 1714.8275 0.82746195 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 3 2 2 34.286 32.89 2;3 6.6259E-59 15602 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 373.48 368.38 1754700000 133790000 121880000 110200000 0 0 0 185790000 189680000 176650000 0 0 0 145120000 138720000 128600000 1954400 0 0 140100000 141220000 140990000 0 0 0 18024 56 17467 335066;335067;335068;335069;335070;335071;335072;335073;335074;335075;335076;335077;335078;335079;335080;335081;335082;335083;335084;335085;335086;335087;335088;335089;335090;335091 204195;204196;204197;204198;204199;204200;204201;204202;204203;204204;204205;204206;204207;204208;204209;204210;204211;204212;204213;204214;204215;204216 204209 21 SALINFLK Unmodified 904.5382 0.53820321 1310 P27833 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.348 38.487 2 0.0024084 18718 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 100.74 85.106 395830000 0 22466000 0 0 1293700 1317300 37620000 32289000 34547000 0 3625700 3733700 37019000 29332000 27982000 0 0 0 49069000 52104000 50948000 5470300 4764000 2250000 18025 1310 17468 335092;335093;335094;335095;335096;335097;335098;335099;335100;335101;335102;335103;335104;335105;335106;335107;335108;335109 204217;204218;204219;204220;204221;204222;204223;204224;204225;204226;204227;204228;204229;204230;204231 204225 14 SALLVLEDGTQFHGR Unmodified 1641.8475 0.84746911 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 2 1 1 1 2 2 2 3 2 2 34.737 33.316 2;3 3.5656E-20 15901 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 261.52 261.52 2307100000 587840000 585100000 509070000 2040900 2799500 2981300 5567000 5790100 6434300 0 0 0 39820000 40182000 33750000 0 0 0 160160000 171100000 154470000 0 0 0 18026 238 17469 335110;335111;335112;335113;335114;335115;335116;335117;335118;335119;335120;335121;335122;335123;335124;335125;335126;335127;335128;335129;335130;335131;335132;335133;335134;335135;335136;335137 204232;204233;204234;204235;204236;204237;204238;204239;204240;204241;204242;204243;204244;204245;204246;204247 204233 14 SALNSLQGAFSAR Unmodified 1320.6786 0.67861287 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 34.708 33.229 2 3.0349E-25 15848 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 211.68 173.59 44498000 0 0 20932000 0 0 0 0 0 23565000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18027 1256 17470 335138;335139;335140;335141;335142;335143;335144;335145;335146;335147;335148 204248;204249;204250;204251;204252;204253;204254;204255;204256;204257;204258 204251 11 SALPDCQFVEADIR Unmodified 1619.7614 0.76135622 1823 P76145 tam Trans-aconitate 2-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.988 36.422 2 0.00032426 17947 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 79.036 73.19 276050000 60639000 58952000 54070000 0 0 0 20633000 22470000 20656000 0 0 0 7186800 4871000 3670900 0 500670 0 7565100 6997000 7101300 0 741640 0 18028 1823 17471 335149;335150;335151;335152;335153;335154;335155;335156;335157;335158;335159;335160;335161;335162 204259;204260;204261;204262 204259 2 SALPTPHEIR Unmodified 1119.6037 0.60365701 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 1 2 2 2 1 1 2 2 2 1 2 2 2 1 16.409 17.101 2;3 0.00046403 5944 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 106.42 74.068 1438100000 112460000 108130000 103280000 1243000 0 0 151010000 118810000 116000000 2986200 0 1918100 108540000 111540000 114320000 2033200 0 0 149780000 123500000 111790000 0 741930 0 18029 244 17472 335163;335164;335165;335166;335167;335168;335169;335170;335171;335172;335173;335174;335175;335176;335177;335178;335179;335180;335181;335182;335183;335184;335185;335186;335187;335188;335189;335190;335191 204263;204264;204265;204266;204267;204268;204269;204270;204271;204272 204270 9 SALQYAASVAGLMITTECMVTDLPK Unmodified 2669.3114 0.31144602 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 3 1 1 2 1 1 1 1 1 1 2 1 1 1 2 2 1 1 1 55.801 54.428 2;3 1.0957E-30 27018 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 191.2 190.67 2134700000 166810000 214530000 187390000 19478000 14139000 13908000 92881000 73793000 101790000 6966400 7081400 0 167300000 172460000 188670000 0 0 4932900 193030000 228900000 259890000 5939300 7718100 7054400 18030 240 17473 335192;335193;335194;335195;335196;335197;335198;335199;335200;335201;335202;335203;335204;335205;335206;335207;335208;335209;335210;335211;335212;335213;335214;335215;335216;335217;335218;335219 204273;204274;204275;204276;204277;204278;204279;204280;204281;204282;204283;204284;204285 204274 13 SALTEGLEVMGIYDGYLGLYEDR Unmodified 2563.2152 0.21522067 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 2 2 2 55.658 54.246 2;3 2.001E-75 25798 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 362.99 349.25 1912500000 164680000 163480000 164690000 0 2423900 0 228210000 209940000 219210000 0 0 0 127710000 131410000 125920000 5918700 0 0 131850000 114430000 122610000 0 0 0 18031 320 17474 335220;335221;335222;335223;335224;335225;335226;335227;335228;335229;335230;335231;335232;335233;335234;335235;335236;335237;335238;335239;335240;335241;335242;335243;335244;335245 204286;204287;204288;204289;204290;204291;204292;204293;204294;204295;204296;204297;204298;204299;204300;204301;204302;204303;204304 204303 19 SALVIQTLANGAVR Unmodified 1411.8147 0.81471242 398 P0A855 tolB Protein TolB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.119 37.507 2 8.2987E-06 13106 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 135.86 125.91 209010000 17111000 15226000 11911000 5991700 6797900 5509000 9332800 8897000 8832500 10586000 8319900 10461000 7506500 6856400 7855700 2986400 1746000 2072300 12754000 13317000 12943000 7949500 8965800 5081100 18032 398 17475 335246;335247;335248;335249;335250;335251;335252;335253;335254;335255;335256;335257;335258;335259;335260;335261;335262;335263;335264;335265;335266;335267;335268;335269 204305;204306;204307;204308;204309;204310 204310 6 SALVPFFAGIPHR Unmodified 1410.7772 0.7772047 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 44.747 42.964 2;3 1.5477E-05 17358 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 102.4 99.363 197570000 8359900 9237400 10814000 5545900 4090200 2773800 7942300 7820400 6463300 21290000 16202000 18447000 6596500 4529300 4004400 0 0 0 11404000 11347000 10249000 9396500 11299000 9756500 18033 1488 17476 335270;335271;335272;335273;335274;335275;335276;335277;335278;335279;335280;335281;335282;335283;335284;335285;335286;335287;335288;335289;335290;335291;335292;335293 204311;204312;204313;204314;204315;204316;204317;204318;204319;204320;204321;204322;204323;204324;204325;204326;204327;204328;204329;204330;204331 204313 18 SALWLSGK Unmodified 860.4756 0.47560295 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 28.244 27.064 2 0.0026738 12427 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 98.523 80.636 756710000 73546000 76660000 57678000 0 0 0 72965000 72430000 69756000 0 0 0 50155000 39990000 50299000 0 0 0 65966000 59741000 67530000 0 0 0 18034 85 17477 335294;335295;335296;335297;335298;335299;335300;335301;335302;335303;335304;335305;335306;335307;335308 204332;204333;204334;204335;204336;204337;204338;204339 204335 6 SAMEPVWNGK Unmodified 1117.5226 0.5226295 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 24.488 23.497 2 7.9645E-05 7156 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 110.12 98.068 12312000000 211900000 198610000 234430000 1499900000 1372900000 1320600000 226000000 215770000 213590000 138360000 143640000 134980000 146770000 118950000 134290000 0 0 36976000 267950000 255770000 236920000 1776100000 1783300000 1644100000 18035 133 17478 335309;335310;335311;335312;335313;335314;335315;335316;335317;335318;335319;335320;335321;335322;335323;335324;335325;335326;335327;335328;335329;335330;335331;335332;335333;335334 204340;204341;204342;204343;204344;204345;204346;204347;204348;204349;204350;204351;204352;204353;204354;204355;204356;204357;204358;204359;204360;204361;204362;204363;204364;204365;204366;204367;204368;204369 204341 30 SAMEPVWNGK Oxidation (M) 1133.5175 0.51754412 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 7 5 5 1 1 1 1 1 1 1 1 1 2 2 4 5 5 19.488 19.627 2 8.4519E-05 4864 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 133.58 133.58 645540000 4548200 7332300 5035000 108110000 104570000 101180000 3745500 3443400 0 6274700 2941200 2261800 2319300 0 0 1253700 741200 646840 6665100 0 5417200 96676000 93522000 88867000 18036 133 17478 335335;335336;335337;335338;335339;335340;335341;335342;335343;335344;335345;335346;335347;335348;335349;335350;335351;335352;335353;335354;335355;335356;335357;335358;335359;335360;335361;335362;335363;335364;335365;335366;335367;335368;335369;335370;335371;335372;335373;335374;335375;335376;335377;335378;335379;335380;335381;335382;335383 204370;204371;204372;204373;204374;204375;204376;204377;204378;204379;204380;204381;204382;204383;204384;204385;204386;204387;204388;204389;204390;204391;204392;204393;204394;204395;204396;204397;204398;204399;204400;204401;204402;204403;204404 204395 46 33 SAMEPVWNGKEFVPR Unmodified 1745.8559 0.85592531 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 2 1 1 3 3 3 33.092 31.532 2;3;4 3.157E-12 12013 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 178.95 176.33 2601500000 0 0 0 545590000 497670000 513780000 0 0 0 18229000 2368300 3071300 0 0 0 11469000 7862100 6694300 0 0 0 334880000 321580000 338270000 18037 133 17479 335384;335385;335386;335387;335388;335389;335390;335391;335392;335393;335394;335395;335396;335397;335398;335399;335400;335401;335402;335403;335404;335405;335406;335407;335408 204405;204406;204407;204408;204409;204410;204411;204412;204413;204414;204415;204416;204417;204418;204419;204420;204421;204422;204423;204424;204425 204411 21 SAMEPVWNGKEFVPR Oxidation (M) 1761.8508 0.85083993 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 3 2 1 1 3 2 3 30.656 28.98 3 4.5399E-07 10909 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 120.53 118.05 123870000 0 0 0 31696000 26060000 21246000 0 0 0 826640 0 0 0 3822500 0 0 0 0 0 0 0 14746000 11572000 13900000 18038 133 17479 335409;335410;335411;335412;335413;335414;335415;335416;335417;335418;335419;335420;335421;335422;335423;335424;335425;335426 204426;204427;204428;204429;204430;204431;204432;204433;204434;204435;204436;204437;204438;204439;204440;204441 204438 46 16 SAMGDDGTILCCSCVPK Unmodified 1869.7729 0.77292524 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.013 30.674 2 3.201E-07 13902 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 110.38 110.38 131760000 14542000 14784000 9441600 0 0 0 11262000 9796900 10964000 0 0 0 8982800 10669000 9085200 0 0 0 8996000 12339000 10897000 0 0 0 18039 1784 17480 335427;335428;335429;335430;335431;335432;335433;335434;335435;335436;335437;335438 204442;204443;204444;204445 204445 4 SANCLKAEAIHYIGDLVQR Unmodified 2157.1001 0.10007176 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 4 4 3 3 3 3 39.771 38.48 2;3;4 4.6714E-24 13855 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 220.34 206.08 4986600000 0 0 0 1871200 1537500 0 0 0 0 69261000 79226000 94477000 0 0 0 1149900000 1118100000 1378800000 0 0 0 355900000 348780000 388820000 18040 383 17481 335439;335440;335441;335442;335443;335444;335445;335446;335447;335448;335449;335450;335451;335452;335453;335454;335455;335456;335457;335458;335459;335460;335461;335462;335463;335464;335465;335466 204446;204447;204448;204449;204450;204451;204452;204453;204454;204455;204456;204457;204458;204459;204460;204461;204462;204463;204464;204465;204466;204467;204468 204448 22 SANHAVEEVR Unmodified 1110.5418 0.54178503 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.604 11.42 2 0.0024508 2547 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 83.883 57.19 183540000 14115000 16320000 15969000 0 0 0 11302000 12957000 17007000 0 0 0 16589000 13545000 12495000 0 0 0 19333000 19377000 14534000 0 0 0 18041 248 17482 335467;335468;335469;335470;335471;335472;335473;335474;335475;335476;335477;335478 204469;204470;204471;204472 204471 0 SANIALVLYK Unmodified 1090.6386 0.63864553 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.933 35.318 2 0.00058265 14067 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 93.649 65.475 4500600000 537240000 468540000 427620000 24113000 26880000 25005000 185440000 172540000 168880000 55480000 51251000 50976000 237540000 246390000 267160000 52995000 42972000 39844000 410180000 385360000 426900000 69626000 65600000 62052000 18042 1620 17483 335479;335480;335481;335482;335483;335484;335485;335486;335487;335488;335489;335490;335491;335492;335493;335494;335495;335496;335497;335498;335499;335500;335501;335502 204473;204474;204475;204476;204477;204478;204479;204480;204481;204482;204483;204484;204485;204486;204487;204488;204489;204490;204491;204492;204493;204494;204495;204496;204497;204498;204499 204477 27 SANIVFADCPDLQQAASATAAGIFYNQGQVCIAGTR Unmodified 3784.7937 0.79374234 1225 P23883 puuC Aldehyde dehydrogenase PuuC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 39.511 38.055 3 0.16664 18573 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 1.3552 0.92914 131690000 41568000 56420000 24745000 0 0 0 0 0 0 0 0 0 0 2532900 0 0 0 0 0 0 6422000 0 0 0 18043 1225 17484 335503;335504;335505;335506;335507;335508 204500;204501 204500 2 SANLCDWYAEHGPAMLK Unmodified 1961.8764 0.87640275 1825 P76149 sad Succinate semialdehyde dehydrogenase [NAD(P)+] Sad yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.183 37.509 3 1.6801E-06 18193 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.464 69.916 163180000 34561000 34946000 29190000 0 0 0 7346500 5682300 6962900 0 0 0 5646200 6460300 5558100 0 0 0 9442200 7485700 9900100 0 0 0 18044 1825 17485 335509;335510;335511;335512;335513;335514;335515;335516;335517;335518;335519;335520 204502 204502 1 SANTEAQGSGR Unmodified 1076.4847 0.48466409 999 P0AG96 secE Protein translocase subunit SecE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.512 7.1951 2 2.337E-06 1779 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 155.42 139.22 169460000 0 0 0 847240 612030 765070 17794000 17369000 18574000 4406300 3768500 0 17181000 13952000 9363300 0 0 460160 19114000 20509000 17488000 2279300 2473700 2502000 18045 999 17486 335521;335522;335523;335524;335525;335526;335527;335528;335529;335530;335531;335532;335533;335534;335535;335536;335537;335538;335539 204503;204504;204505;204506;204507;204508;204509;204510;204511;204512;204513;204514;204515 204503 13 SAPALAAGNAMIFKPSEVTPLTALK Unmodified 2497.3614 0.3614314 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 48.337 47.098 2;3 1.6023E-30 22979 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 198.51 187.56 290470000 101860000 88514000 100100000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18046 1141 17487 335540;335541;335542;335543;335544;335545 204516;204517;204518;204519 204518 4 SAPAVVR Unmodified 698.40752 0.40752338 1361 P31130 ydeI Uncharacterized protein YdeI yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.608 12.44 2 0.025077 3416 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.021 54.254 540350000 122200000 100370000 114550000 0 0 0 51646000 51630000 56472000 0 0 0 5895300 7393300 4701400 0 0 0 6989500 8636200 9860100 0 0 0 18047 1361 17488 335546;335547;335548;335549;335550;335551;335552;335553;335554;335555;335556;335557 204520;204521 204520 2 SAPFAPAAR Unmodified 886.4661 0.4661009 603 P0AAN3 hypB Hydrogenase isoenzymes nickel incorporation protein HypB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 16.5 17.253 2 0.0049998 6277 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 76.035 71.718 339020000 9660800 29963000 29002000 0 0 0 52075000 65979000 0 0 0 0 35726000 0 26657000 0 0 0 30691000 30403000 28861000 0 0 0 18048 603 17489 335558;335559;335560;335561;335562;335563;335564;335565;335566;335567 204522;204523;204524;204525;204526 204523 5 SAPLAEIIDHIIVR Unmodified 1545.8879 0.88787736 1737 P69506 ytfE Iron-sulfur cluster repair protein YtfE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.41 51.971 2;3 1.0451E-05 25425 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 94.551 92.616 252430000 19710000 17628000 21262000 0 0 0 31504000 32828000 30019000 0 0 0 19480000 19747000 16749000 0 0 0 12226000 15010000 16267000 0 0 0 18049 1737 17490 335568;335569;335570;335571;335572;335573;335574;335575;335576;335577;335578;335579;335580;335581;335582;335583;335584;335585;335586;335587;335588;335589;335590;335591 204527;204528;204529;204530;204531 204528 4 SAPSSHYTLQLSSSSNYDNLNGWAK Unmodified 2726.2572 0.25723692 1072 P11557 damX Cell division protein DamX yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 37.309 35.265 3 3.0919E-05 13867 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 85.062 85.011 38740000 0 0 0 0 0 0 0 0 3990300 6005700 5393700 4563600 0 2537200 0 0 0 0 0 8702700 5458600 0 2088300 0 18050 1072 17491 335592;335593;335594;335595;335596;335597;335598;335599 204532;204533 204533 2 SAPYFLEILDK Unmodified 1294.6809 0.68090428 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 52.341 51.079 2 0.014571 23803 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 61.353 50.719 356400000 0 0 29669000 0 0 0 39226000 46325000 43033000 0 0 0 36015000 0 33745000 0 0 0 41391000 41312000 45682000 0 0 0 18051 473 17492 335600;335601;335602;335603;335604;335605;335606;335607;335608 204534;204535 204535 2 SAPYFLEILDKR Unmodified 1450.782 0.78201531 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 45.121 43.746 2;3 2.7623E-05 21108 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 105.17 105.17 594710000 48155000 42105000 45806000 0 0 0 59053000 77731000 53390000 0 0 0 36470000 38439000 33568000 0 0 0 60971000 56350000 42670000 0 0 0 18052 473 17493 335609;335610;335611;335612;335613;335614;335615;335616;335617;335618;335619;335620;335621;335622;335623;335624;335625;335626;335627;335628;335629;335630 204536;204537;204538;204539;204540;204541;204542;204543;204544;204545;204546;204547;204548 204541 13 SAQDSAENCPSGMQFPDTAIAHANVR Unmodified 2773.2184 0.21842535 1123 P16681 phnB Protein PhnB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 32.937 31.384 3 1.7021E-41 14732 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 222.16 222.1 180020000 59494000 40290000 37659000 2428200 2477000 2327200 10260000 11096000 10207000 0 0 0 0 0 0 0 0 0 0 3777000 0 0 0 0 18053 1123 17494 335631;335632;335633;335634;335635;335636;335637;335638;335639;335640 204549;204550;204551;204552;204553 204553 5 SAQELER Unmodified 831.40865 0.4086456 1190 P21893 recJ Single-stranded-DNA-specific exonuclease RecJ yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 10.207 10.99 2 0.14093 2409 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 57.463 16.342 120550000 39735000 36481000 22928000 0 0 0 10022000 4476100 2566100 0 0 0 2216000 2127300 0 0 0 0 0 0 0 0 0 0 18054 1190 17495 335641;335642;335643;335644;335645;335646;335647;335648 204554;204555 204554 0 SAQGTAGPDFR Unmodified 1105.5152 0.51523593 1568 P45464 lpoA Penicillin-binding protein activator LpoA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.457 15.085 2 8.0392E-05 4925 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.6 108.81 76605000 4544000 3891200 4706300 783200 721610 825940 6109700 4038000 3640200 2978700 2402000 2985000 3987600 4103100 3196900 0 0 0 8148500 7662200 8596700 1142400 1189700 951550 18055 1568 17496 335649;335650;335651;335652;335653;335654;335655;335656;335657;335658;335659;335660;335661;335662;335663;335664;335665;335666;335667;335668;335669 204556;204557;204558;204559;204560;204561;204562;204563 204560 8 SAQINNIRPEFDR Unmodified 1558.7852 0.7852032 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 21.966 22.164 3 5.1787E-06 8963 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 99.011 96.376 641340000 228580000 210300000 202450000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18056 1888 17497 335670;335671;335672 204564;204565;204566 204566 3 SAQNVVNALEK Unmodified 1171.6197 0.619701 1102 P15042 ligA DNA ligase yes yes 0 0 0 By MS/MS 1 22.092 22.046 2 9.1363E-05 6583 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 121.5 90.816 10120000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10120000 0 0 0 0 0 0 0 18057 1102 17498 335673 204567 204567 1 SAQPVDIQIFGR Unmodified 1329.7041 0.70409934 802 P0ADS2 zapA Cell division protein ZapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 40.037 38.38 2 3.1303E-08 17843 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 163.94 142.48 1183000000 99091000 92819000 81725000 0 0 0 126940000 116050000 114470000 0 0 0 93681000 92149000 95177000 0 0 0 0 133870000 137010000 0 0 0 18058 802 17499 335674;335675;335676;335677;335678;335679;335680;335681;335682;335683;335684 204568;204569;204570;204571;204572;204573;204574;204575;204576;204577;204578 204577 11 SASADILR Unmodified 831.44503 0.4450311 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 16.5 17.298 2 0.0098009 6139 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 79.451 38.878 79844000 0 0 0 0 0 0 5347300 5999300 0 0 0 0 9003500 8958900 9410000 0 0 0 14769000 14119000 12237000 0 0 0 18059 1070 17500 335685;335686;335687;335688;335689;335690;335691;335692 204579;204580;204581;204582;204583;204584 204580 6 SASAFNTDK Unmodified 939.42977 0.42977497 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 11.585 12.495 2 9.1936E-08 3153 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 153.78 147.32 1101800000 128300000 126340000 0 1031700 864440 863760 0 203600000 0 0 0 0 220610000 0 185810000 0 0 0 0 0 234420000 0 0 0 18060 92 17501 335693;335694;335695;335696;335697;335698;335699;335700;335701;335702 204585;204586;204587;204588;204589 204588 5 SASLAYQNAVTAVSEGKPDSIPAAEK Unmodified 2603.3079 0.3078755 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.282 32.585 3 2.8844E-22 12934 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 164.43 158.07 474290000 0 0 0 9928400 12637000 11596000 0 72905000 45495000 21562000 24727000 28440000 55418000 0 52770000 0 5446400 0 77021000 0 0 21404000 14733000 20211000 18061 1876 17502 335703;335704;335705;335706;335707;335708;335709;335710;335711;335712;335713;335714;335715;335716;335717 204590;204591;204592;204593;204594;204595;204596;204597;204598;204599;204600;204601;204602;204603;204604 204591 15 SASNENFR Unmodified 923.40971 0.40970823 1407 P33030 yeiR Uncharacterized protein YeiR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 10.935 11.783 2 0.0023436 2905 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 101.28 91.373 56421000 0 0 0 0 0 0 7452700 7847400 9125000 0 0 0 4245000 4878600 3751400 0 0 0 10645000 0 8476400 0 0 0 18062 1407 17503 335718;335719;335720;335721;335722;335723;335724;335725;335726 204605;204606;204607;204608 204607 4 SATDAANAAQNR Unmodified 1188.5483 0.54832698 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 10.918 11.516 2 1.7558E-23 2874 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 239.6 231.69 97829000 0 0 0 0 0 0 7296100 9115700 10199000 0 0 0 7202000 7803400 6349700 2254600 2007400 1167800 16658000 13227000 10765000 0 3782400 0 18063 477 17504 335727;335728;335729;335730;335731;335732;335733;335734;335735;335736;335737;335738;335739 204609;204610;204611;204612;204613;204614;204615 204611 6 SATELLAYCNETGYSLSGLAMQNELALHSK Unmodified 3270.5537 0.55367821 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.405 48.995 3 3.3845E-23 24306 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.62 162.85 317440000 19508000 15410000 11927000 0 0 0 28051000 29593000 30749000 0 5036900 0 27480000 29338000 27456000 0 0 0 26845000 32868000 29871000 0 0 3311300 18064 1117 17505 335740;335741;335742;335743;335744;335745;335746;335747;335748;335749;335750;335751;335752;335753 204616;204617;204618;204619;204620;204621;204622;204623;204624;204625 204617 8 SATGLDEDALAFALLPLAAACAR Unmodified 2316.1784 0.17838166 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 1 2 1 2 1 1 2 1 55.698 54.196 2;3 4.9761E-22 25901 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 175.29 170.21 238510000 0 0 0 0 0 0 38031000 11013000 56615000 0 0 0 17653000 52524000 13643000 0 0 0 13289000 15639000 20098000 0 0 0 18065 654 17506 335754;335755;335756;335757;335758;335759;335760;335761;335762;335763;335764;335765;335766 204626;204627 204627 1 SATGTSSR Unmodified 765.3617 0.3616954 805 P0ADT2 ygiB UPF0441 protein YgiB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1 1 1 1 4.8367 5.6397 2 0.0028056 753 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 97.798 92.973 36692000 2415800 2224600 1823500 0 0 0 0 0 0 0 0 0 6016900 0 3577500 0 0 0 5420900 6074100 9139100 0 0 0 18066 805 17507 335767;335768;335769;335770;335771;335772;335773;335774;335775;335776 204628;204629;204630;204631 204630 4 SATIAVVGPLADSK Unmodified 1327.7347 0.73473076 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.771 32.345 2 3.1599E-06 14726 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 121.02 115.82 1048200000 31417000 34706000 31163000 0 0 0 31989000 39167000 37423000 55215000 51579000 57099000 0 35242000 28067000 204200000 138250000 154780000 0 52585000 0 64596000 741160 0 18067 1421 17508 335777;335778;335779;335780;335781;335782;335783;335784;335785;335786;335787;335788;335789;335790;335791;335792;335793 204632;204633;204634 204633 2 SATLPLPAVILEK Unmodified 1350.8123 0.8122528 1540 P39411 yjjX Non-canonical purine NTP phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 49.9 48.463 2 0.0015405 23436 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.82 77.307 164660000 20907000 16360000 13817000 0 0 0 14789000 11373000 10696000 1404200 0 0 9945500 7451300 9964100 0 0 0 14430000 17080000 16439000 0 0 0 18068 1540 17509 335794;335795;335796;335797;335798;335799;335800;335801;335802;335803;335804;335805;335806 204635;204636;204637;204638;204639;204640;204641;204642;204643;204644;204645;204646 204640 12 SATNGLTPAPQAR Unmodified 1282.663 0.6629628 599 P0AAJ5 fdoH Formate dehydrogenase-O iron-sulfur subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 15.206 15.662 2 0.022795 3813 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 51.092 47.836 14368000 0 0 0 2609200 1587600 1965700 0 0 0 1441200 1876000 2231900 0 0 0 0 0 0 0 0 0 0 1350100 1306800 18069 599 17510 335807;335808;335809;335810;335811;335812;335813;335814 204647;204648;204649 204649 3 SATNSVLWFMGDDIPHVPNK Unmodified 2227.0732 0.073188303 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 49.918 48.547 2;3 2.2362E-10 23738 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 129.53 116.9 1987900000 298290000 265250000 240920000 0 0 0 132840000 110530000 102130000 0 0 0 103010000 91254000 101100000 0 0 0 178630000 180430000 183500000 0 0 0 18070 1444 17511 335815;335816;335817;335818;335819;335820;335821;335822;335823;335824;335825;335826;335827;335828;335829;335830;335831;335832;335833;335834;335835 204650;204651;204652;204653;204654;204655;204656;204657;204658;204659;204660;204661;204662;204663;204664;204665;204666;204667;204668;204669 204662 17 SATNSVLWFMGDDIPHVPNKR Unmodified 2383.1743 0.17429933 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 1 2 2 3 2 3 3 3 3 3 1 43.574 42.059 2;3;4 3.7509E-43 20581 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 305.23 276.5 4001800000 613390000 574280000 521090000 3982100 4298700 0 174020000 184670000 183060000 0 0 0 199240000 183160000 193300000 0 0 0 415600000 377750000 370160000 3821700 0 0 18071 1444 17512 335836;335837;335838;335839;335840;335841;335842;335843;335844;335845;335846;335847;335848;335849;335850;335851;335852;335853;335854;335855;335856;335857;335858;335859;335860;335861;335862;335863;335864;335865;335866;335867;335868;335869;335870;335871 204670;204671;204672;204673;204674;204675;204676;204677;204678;204679;204680;204681;204682;204683;204684;204685;204686;204687;204688;204689;204690;204691;204692;204693;204694;204695;204696;204697;204698 204686 29 SATPAQAQAVHK Unmodified 1207.6309 0.63093439 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 10.533 11.356 2;3 1.5771E-05 2654 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 149.94 145.04 18907000000 1412300000 1365900000 1204400000 3863800 0 0 2356500000 2332400000 2222300000 0 0 0 1535500000 1246600000 1184800000 0 0 0 1427200000 1313100000 1302000000 0 0 0 18072 399 17513 335872;335873;335874;335875;335876;335877;335878;335879;335880;335881;335882;335883;335884;335885;335886;335887;335888;335889;335890;335891;335892;335893;335894;335895;335896 204699;204700;204701;204702;204703;204704;204705;204706;204707;204708;204709;204710;204711;204712;204713;204714;204715;204716;204717;204718;204719;204720 204700 22 SATPEQELGK Unmodified 1058.5244 0.52440364 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.254 14.12 2 1.8844E-06 4303 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 160.11 146.73 1456900000 208960000 205490000 197160000 0 0 0 117340000 163800000 136600000 0 0 0 66827000 55393000 53949000 0 0 0 94383000 83231000 73811000 0 0 0 18073 43 17514 335897;335898;335899;335900;335901;335902;335903;335904;335905;335906;335907;335908 204721;204722;204723;204724;204725;204726;204727;204728;204729 204723 9 SATTAEELR Unmodified 976.48254 0.48253882 1748 P69811 fruB Multiphosphoryl transfer protein;Phosphocarrier protein HPr;Fructose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.461 13.142 2 0.081658 3080 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 44.753 32.848 461100000 42628000 35824000 36358000 0 0 0 48013000 36778000 38475000 0 0 2396500 0 32511000 40743000 0 0 0 48851000 44749000 42919000 4210900 3168000 3471800 18074 1748 17515 335909;335910;335911;335912;335913;335914;335915;335916;335917;335918;335919;335920;335921;335922;335923 204730 204730 1 SATTTHGR Unmodified 829.40423 0.40422892 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 5.1928 5.9254 2 0.00069413 955 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.12 113.45 22805000 7786900 8338700 6679200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18075 118 17516 335924;335925;335926 204731;204732;204733 204732 3 SAVAPVDLILLK Unmodified 1237.7646 0.76457433 1369 P31473 ravA ATPase RavA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.877 49.585 2 0.00016889 24208 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.681 74.562 174970000 15581000 18156000 0 587290 614090 695500 24585000 23770000 20281000 0 0 0 13397000 12440000 13082000 0 0 0 8093300 11775000 11918000 0 0 0 18076 1369 17517 335927;335928;335929;335930;335931;335932;335933;335934;335935;335936;335937;335938;335939;335940 204734;204735;204736;204737;204738 204738 5 SAVASEVAHQLHAAFLDGDFLHPR Unmodified 2587.2932 0.29316891 1589 P46859 gntK Thermoresistant gluconokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 3 3 3 2 1 1 3 3 3 1 1 1 3 3 3 1 45.603 44.162 3;4;5 1.9683E-30 20672 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 186.91 174.36 3088300000 28645000 31497000 17233000 1361100 0 0 329240000 302450000 321000000 9232800 4104100 8935200 332970000 286170000 286460000 5050900 6103300 7371700 378910000 369490000 358630000 3462800 0 0 18077 1589 17518 335941;335942;335943;335944;335945;335946;335947;335948;335949;335950;335951;335952;335953;335954;335955;335956;335957;335958;335959;335960;335961;335962;335963;335964;335965;335966;335967;335968;335969;335970;335971;335972;335973;335974;335975;335976;335977;335978;335979;335980;335981 204739;204740;204741;204742;204743;204744;204745;204746;204747;204748;204749;204750;204751;204752;204753;204754;204755;204756;204757;204758;204759;204760;204761;204762;204763;204764;204765;204766;204767;204768;204769;204770;204771;204772;204773 204770 35 SAVEPFIRDDMSPAAR Unmodified 1760.8516 0.85156821 188 P08395 sppA Protease 4 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 30.516 28.729 3 9.5663E-07 11221 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 87.519 78.919 41204000 0 0 0 0 0 3078200 0 0 0 8378400 7027000 7242100 0 0 0 0 0 0 0 4430700 3627900 0 4025500 3394600 18078 188 17519 335982;335983;335984;335985;335986;335987;335988;335989 204774;204775;204776 204774 2 SAVLSSMQGSLPGGCDAVDKIPVAR Unmodified 2514.257 0.25704268 1165 P20099 bisC Biotin sulfoxide reductase yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.027 37.347 3 4.4639E-05 18146 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.284 55.276 94356000 13022000 11128000 11421000 0 0 0 6348900 8082800 8142000 0 0 0 6772000 6351500 4052200 0 0 0 9780000 0 9255400 0 0 0 18079 1165 17520 335990;335991;335992;335993;335994;335995;335996;335997;335998;335999;336000 204777;204778 204778 1 SAVLTAEQALK Unmodified 1129.6343 0.63428844 796 P0ADP2 yigI Uncharacterized protein YigI yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.459 24.309 2 0.032185 10616 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 56.916 34.83 245420000 34301000 44429000 31220000 0 0 0 9540700 11372000 10208000 1171700 0 0 12325000 8876300 7354800 0 0 0 24684000 23396000 21639000 0 2209600 2691700 18080 796 17521 336001;336002;336003;336004;336005;336006;336007;336008;336009;336010;336011;336012;336013;336014;336015 204779 204779 0 SAVNAIETR Unmodified 959.50361 0.50360861 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.304 14.955 2 0.00014452 4805 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 131.41 107.64 369030000 32177000 27090000 28107000 6055400 7793100 1338200 21718000 17909000 20923000 7469000 7450900 7594200 21792000 19055000 18281000 0 0 2298800 39439000 38151000 31617000 4598600 3680800 4492800 18081 1183 17522 336016;336017;336018;336019;336020;336021;336022;336023;336024;336025;336026;336027;336028;336029;336030;336031;336032;336033;336034;336035;336036;336037;336038 204780;204781;204782;204783;204784;204785;204786;204787;204788;204789;204790;204791;204792;204793 204786 14 SAWEAGVK Unmodified 846.42357 0.42356738 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.087 16.866 2 0.074458 4197 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 54.611 45.264 268040000 13085000 22753000 26296000 0 0 2537400 18808000 19698000 19862000 0 0 5262200 22909000 22119000 21538000 0 0 0 22062000 25165000 25948000 0 0 0 18082 1876 17523 336039;336040;336041;336042;336043;336044;336045;336046;336047;336048;336049;336050;336051;336052;336053 204794;204795;204796 204796 2 SAWVEGATEAEVR Unmodified 1403.6681 0.66810776 1790 P75915 ycdY Chaperone protein YcdY yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.794 25.593 2 8.4306E-09 11604 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 163.66 149.36 398980000 30566000 35264000 28151000 0 0 0 34798000 35121000 34449000 3128800 2910500 0 25599000 26112000 24747000 972270 0 0 38405000 42022000 36735000 0 0 0 18083 1790 17524 336054;336055;336056;336057;336058;336059;336060;336061;336062;336063;336064;336065;336066;336067;336068 204797;204798;204799;204800;204801;204802 204801 6 SAYALGASLGR Unmodified 1064.5615 0.56145784 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.565 25.519 2 3.7204E-08 11018 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 177.7 158 3931800000 0 212920000 196550000 2198200 2087600 1878400 407020000 375320000 376650000 1430700 0 0 344570000 325040000 318050000 1473900 1024800 1401600 460770000 465950000 429380000 2400800 2376000 3307800 18084 1572 17525 336069;336070;336071;336072;336073;336074;336075;336076;336077;336078;336079;336080;336081;336082;336083;336084;336085;336086;336087;336088;336089 204803;204804;204805;204806;204807;204808;204809;204810;204811;204812;204813 204811 11 SAYANAAER Unmodified 951.44101 0.44100836 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 11.041 11.899 2 0.0012005 3041 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.601 85.866 529960000 115420000 106870000 92777000 2390000 1913700 2349600 68435000 67935000 60159000 0 0 0 11711000 0 0 0 0 0 0 0 0 0 0 0 18085 757 17526 336090;336091;336092;336093;336094;336095;336096;336097;336098;336099 204814;204815;204816;204817;204818;204819;204820;204821 204819 3 SAYLISQADFVGCHQLQFIDK Unmodified 2439.1893 0.18928069 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 46.798 45.387 3 2.2764E-10 22370 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 120.75 118.86 218460000 0 3461500 2629000 0 0 0 23882000 25348000 25093000 0 0 0 23253000 19686000 14937000 0 0 0 27829000 25214000 27126000 0 0 0 18086 1609 17527 336100;336101;336102;336103;336104;336105;336106;336107;336108;336109;336110 204822;204823;204824;204825;204826;204827 204824 6 SAYPDPQALIGR Unmodified 1286.6619 0.66190017 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.693 35.83 2 1.5331E-05 17203 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 126.07 121.77 934470000 83419000 89515000 76357000 918190 1267200 1183100 133830000 156340000 86865000 2350400 2238200 2030700 66847000 68051000 69738000 0 0 0 0 0 90784000 0 1189000 1538800 18087 60 17528 336111;336112;336113;336114;336115;336116;336117;336118;336119;336120;336121;336122;336123;336124;336125;336126;336127;336128 204828;204829;204830;204831;204832;204833;204834 204832 5 SAYPLALTHAAR Unmodified 1269.683 0.68296996 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.947 21.772 3 0.038744 8995 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 33.685 29.345 187760000 19666000 13138000 9110700 0 0 0 17236000 15797000 15183000 3806300 3915500 2590300 12480000 12056000 11841000 0 0 0 19000000 16433000 15507000 0 0 0 18088 1259 17529 336129;336130;336131;336132;336133;336134;336135;336136;336137;336138;336139;336140;336141;336142;336143 204835;204836;204837 204836 1 SCACTTCHCIVR Unmodified 1523.6102 0.61015742 550 P0A9R4 fdx 2Fe-2S ferredoxin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 11.613 12.464 2;3 7.1807E-18 3395 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 222 222 2656900000 190080000 189760000 181680000 719130 619830 0 201590000 216460000 224610000 0 0 0 236340000 215030000 212520000 0 0 0 276280000 248620000 262620000 0 0 0 18089 550 17530 336144;336145;336146;336147;336148;336149;336150;336151;336152;336153;336154;336155;336156;336157;336158;336159;336160;336161;336162;336163;336164;336165;336166;336167;336168;336169 204838;204839;204840;204841;204842;204843;204844;204845;204846;204847;204848;204849;204850;204851;204852;204853;204854;204855;204856;204857;204858;204859;204860 204851 21 SCAFLIADGVMPSNENR Unmodified 1879.8557 0.85566731 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 2 2 2 1 1 1 2 2 2 2 2 2 42.773 40.994 2;3 7.9064E-50 20446 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 279.75 273.78 1458200000 139740000 121830000 109660000 0 645630 0 118560000 112330000 103680000 3131600 2556500 2572100 111200000 100060000 104670000 0 0 0 137600000 145410000 144580000 0 0 0 18090 59 17531 336170;336171;336172;336173;336174;336175;336176;336177;336178;336179;336180;336181;336182;336183;336184;336185;336186;336187;336188;336189;336190;336191;336192;336193;336194;336195;336196;336197;336198 204861;204862;204863;204864;204865;204866;204867;204868;204869;204870;204871;204872;204873;204874;204875;204876;204877;204878;204879;204880;204881;204882;204883;204884 204861 24 SCAISPGTLYHHFISK Unmodified 1816.893 0.89303909 746 P0ACT6 uidR HTH-type transcriptional regulator UidR yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.74 30.401 4 0.14509 13652 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 14.793 10.622 67246000 5418100 7497800 5811900 0 0 0 7545000 4914000 6687700 0 0 0 3804400 4835000 4196000 0 0 0 5662700 6393700 4479600 0 0 0 18091 746 17532 336199;336200;336201;336202;336203;336204;336205;336206;336207;336208;336209;336210 204885 204885 1 SCAYLVVK Unmodified 938.48954 0.48953845 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 21.625 21.799 2 0.078872 8508 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 53.679 13.476 60330000 6823700 3799300 0 0 0 0 0 0 0 0 0 0 7023200 6731800 5234200 0 0 0 17139000 13578000 0 0 0 0 18092 1055 17533 336211;336212;336213;336214;336215;336216;336217 204886;204887 204887 2 SCEELEIVWNNIK Unmodified 1632.7818 0.78175731 511 P0A9D4 cysE Serine acetyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 48.723 47.384 2 4.2081E-05 22924 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.39 123.2 115110000 18751000 14831000 15732000 0 0 0 12343000 8910200 7119200 0 0 0 5975600 0 4151400 0 0 0 8171100 9441500 9684900 0 0 0 18093 511 17534 336218;336219;336220;336221;336222;336223;336224;336225;336226;336227;336228 204888;204889;204890;204891 204891 2 SCGEFIEMK Unmodified 1099.4678 0.46781673 1875 P76575 yfgJ Uncharacterized protein YfgJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.159 24.08 2 0.00099819 10679 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 95.815 95.815 433860000 30990000 32179000 24309000 0 0 0 36723000 40604000 38392000 3942800 4461200 2970300 35034000 31606000 26211000 0 625570 0 39416000 47004000 39392000 0 0 0 18094 1875 17535 336229;336230;336231;336232;336233;336234;336235;336236;336237;336238;336239;336240;336241;336242;336243;336244 204892;204893;204894;204895;204896;204897;204898;204899;204900;204901;204902;204903;204904;204905 204898 14 SCGHCDACISGNQINCEQGAVPTIMNR Unmodified 3048.2729 0.27286223 1296 P27250 ahr Aldehyde reductase Ahr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.847 28.499 3 5.8469E-31 13320 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187.18 187.18 230220000 38296000 35404000 34180000 0 0 0 20038000 20345000 21365000 0 0 0 9767400 9274400 9748000 0 0 0 11221000 9932500 10651000 0 0 0 18095 1296 17536 336245;336246;336247;336248;336249;336250;336251;336252;336253;336254;336255;336256 204906;204907;204908;204909;204910;204911 204908 6 SCGLPAGAVQAIDNPDR Unmodified 1739.8261 0.82608174 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.177 30.837 2 1.0679E-18 14418 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 185.59 179.62 415410000 47942000 50203000 46235000 0 0 0 33814000 32874000 33996000 0 0 0 25045000 30823000 27546000 0 0 0 27412000 31256000 28259000 0 0 0 18096 148 17537 336257;336258;336259;336260;336261;336262;336263;336264;336265;336266;336267;336268 204912;204913;204914;204915;204916;204917;204918;204919;204920;204921;204922;204923 204917 12 SCIAQAR Unmodified 804.39122 0.39122139 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.728 11.544 2 0.002549 2825 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.69 65.336 659840000 124820000 120350000 99222000 0 0 0 43343000 39393000 37684000 0 0 0 28354000 21593000 18980000 0 0 0 40116000 44498000 41480000 0 0 0 18097 1465 17538 336269;336270;336271;336272;336273;336274;336275;336276;336277;336278;336279;336280 204924;204925;204926 204925 3 SCMGLTGCGTIDELR Unmodified 1668.727 0.72696132 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 1 1 2 2 2 2 2 2 1 1 1 35.019 33.433 2;3 1.9166E-45 15862 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 275.76 271.46 2936700000 252500000 267580000 217870000 2036900 0 0 180520000 159090000 162120000 1364900 1458900 0 292870000 274550000 245690000 0 0 0 287550000 286930000 291230000 4552900 4871000 3957300 18098 788 17539 336281;336282;336283;336284;336285;336286;336287;336288;336289;336290;336291;336292;336293;336294;336295;336296;336297;336298;336299;336300;336301;336302;336303;336304;336305;336306;336307;336308 204927;204928;204929;204930;204931;204932;204933;204934;204935;204936;204937;204938;204939;204940;204941;204942;204943;204944;204945;204946;204947;204948;204949;204950 204937 23 SCMGLTGCGTIDELR Oxidation (M) 1684.7219 0.72187594 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 30.239 28.932 2 0.000399 13650 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.519 67.519 36769000 5412300 0 0 0 0 0 5500400 0 0 0 0 0 7130500 2120900 2794300 0 0 0 5296000 5079400 3435200 0 0 0 18099 788 17539 336309;336310;336311;336312;336313;336314;336315;336316 204951;204952 204952 387 0 SCPVIELTQQLIR Unmodified 1555.8392 0.83921261 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 50.958 49.706 2 0.00095615 24142 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 69.276 58.967 49573000 0 0 0 0 0 0 0 0 8987200 0 0 0 0 0 0 0 0 0 12800000 13348000 14437000 0 0 0 18100 849 17540 336317;336318;336319;336320 204953 204953 1 SCQISCK Acetyl (Protein N-term) 923.38409 0.3840871 17 CON__P35908 yes yes 1 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.011 14.374 2 0.012294 3759 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 79.116 69.875 42392000 0 0 0 2448500 0 0 3013300 0 0 4453300 2654600 2000900 2915800 3080200 0 7182900 3658900 4065000 0 0 0 0 4029300 2889300 + 18101 17 17541 336321;336322;336323;336324;336325;336326;336327;336328;336329;336330;336331;336332 204954 204954 1 SCQTALYHIAEALVR Unmodified 1730.8774 0.87738903 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 44.648 43.062 2;3 3.1117E-21 21046 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 257.91 246.69 3739000000 440470000 452980000 392790000 1195100 0 0 302250000 316510000 295780000 1749700 2151900 0 220340000 189050000 170000000 0 0 0 337200000 325480000 291040000 0 0 0 18102 58 17542 336333;336334;336335;336336;336337;336338;336339;336340;336341;336342;336343;336344;336345;336346;336347;336348;336349;336350;336351;336352;336353;336354;336355;336356;336357;336358;336359 204955;204956;204957;204958;204959;204960;204961;204962;204963;204964;204965;204966;204967;204968;204969;204970;204971;204972;204973;204974;204975;204976;204977;204978 204967 24 SCSQGGVR Unmodified 849.3763 0.37629961 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 5.3204 6.1695 2 0.00052127 1039 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 134.44 129.61 867770000 65251000 71890000 67771000 0 0 0 82494000 97135000 89485000 0 0 0 56634000 54565000 55561000 0 0 0 71554000 86286000 69142000 0 0 0 18103 29 17543 336360;336361;336362;336363;336364;336365;336366;336367;336368;336369;336370;336371 204979;204980;204981;204982;204983;204984;204985;204986 204981 8 SCVEVAR Unmodified 819.39089 0.39088704 920 P0AF93 ridA 2-iminobutanoate/2-iminopropanoate deaminase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.438 12.322 2 0.00037797 3042 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 155.73 114.81 7960400000 1118700000 986070000 1075000000 3847300 3333500 2769800 971600000 893290000 866050000 0 0 0 244020000 245650000 236680000 0 0 0 470210000 418950000 424280000 0 0 0 18104 920 17544 336372;336373;336374;336375;336376;336377;336378;336379;336380;336381;336382;336383;336384;336385;336386 204987;204988;204989;204990;204991;204992 204992 6 SDAANFDITVFCEEPR Unmodified 1869.8203 0.82032766 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 46.97 45.591 2 2.285E-10 22233 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.69 147.16 62392000 5488800 0 0 0 0 0 0 7010900 5134700 0 0 0 7531000 7050000 5669700 0 0 0 9219500 6453300 8834300 0 0 0 18105 180 17545 336387;336388;336389;336390;336391;336392;336393;336394;336395 204993;204994 204993 2 SDAEAFSMDK Unmodified 1099.4492 0.44918978 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.139 20.415 2 0.0035145 8006 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.607 60.251 461740000 46305000 41492000 44228000 4341200 3236100 3605200 39060000 48516000 50446000 1246600 1145700 698320 21841000 20996000 23669000 0 566580 0 37678000 38363000 34312000 0 0 0 18106 839 17546 336396;336397;336398;336399;336400;336401;336402;336403;336404;336405;336406;336407;336408;336409;336410;336411;336412;336413;336414 204995;204996;204997;204998;204999;205000;205001;205002;205003 204999 9 SDAEPHYLPQLR Unmodified 1424.7048 0.70482762 306 P0A734 minE Cell division topological specificity factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 1 1 1 2 2 1 2 2 2 1 1 1 26.143 24.909 2;3 7.9214E-12 11113 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 190.96 182.1 2105100000 182500000 170380000 181590000 3349100 2370500 4045600 208190000 197940000 203190000 5098500 3154600 3108100 154240000 146090000 96405000 0 0 0 179020000 178250000 176320000 3785100 3518500 2561600 18107 306 17547 336415;336416;336417;336418;336419;336420;336421;336422;336423;336424;336425;336426;336427;336428;336429;336430;336431;336432;336433;336434;336435;336436;336437;336438;336439;336440;336441;336442;336443;336444;336445;336446;336447 205004;205005;205006;205007;205008;205009;205010;205011;205012;205013;205014;205015;205016;205017;205018;205019;205020;205021;205022;205023;205024;205025;205026;205027;205028;205029;205030 205018 27 SDAGSLVFTSSSVGR Unmodified 1468.7158 0.71578623 1382 P31808 yciK Uncharacterized oxidoreductase YciK yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 32.06 30.699 2 2.5253E-15 14355 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 196.24 189.03 135830000 27176000 0 16233000 0 0 0 10631000 12682000 13378000 0 0 0 10322000 6647800 8621100 0 0 0 10654000 11379000 8108700 0 0 0 18108 1382 17548 336448;336449;336450;336451;336452;336453;336454;336455;336456;336457;336458 205031;205032;205033;205034;205035;205036;205037;205038;205039 205036 9 SDALQGLSK Unmodified 917.48181 0.48181054 1715 P67826 cutC Copper homeostasis protein CutC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 17.36 18.053 2 0.0020065 6278 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.67 61.533 146530000 10118000 16414000 0 0 0 0 14818000 15994000 0 0 0 0 14093000 15814000 13703000 0 0 0 14758000 15654000 15160000 0 0 0 18109 1715 17549 336459;336460;336461;336462;336463;336464;336465;336466;336467;336468 205040;205041;205042;205043 205043 4 SDATADQHQLQALR Unmodified 1552.7594 0.75938238 1454 P37005 lasT Uncharacterized tRNA/rRNA methyltransferase LasT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 16.589 17.314 2;3 1.923E-06 5817 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 98.942 93.863 225420000 18865000 20691000 9651700 0 0 0 23107000 20258000 21076000 0 0 0 18880000 17852000 15300000 0 532730 0 20008000 20028000 19173000 0 0 0 18110 1454 17550 336469;336470;336471;336472;336473;336474;336475;336476;336477;336478;336479;336480;336481;336482;336483;336484;336485;336486;336487;336488;336489;336490;336491;336492;336493 205044;205045;205046;205047 205047 4 SDDDLEPVVIGR Unmodified 1313.6463 0.64630969 860 P0AEH3 elaA Protein ElaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 34.365 32.847 2 1.3353E-11 15876 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 182.65 175.59 494290000 0 0 0 0 0 0 77847000 89605000 82898000 0 0 0 35498000 31950000 31102000 0 0 0 45963000 51659000 47763000 0 0 0 18111 860 17551 336494;336495;336496;336497;336498;336499;336500;336501;336502 205048;205049;205050;205051;205052;205053;205054;205055 205049 6 SDDMSMGLPSSAGEHGVLR Acetyl (Protein N-term) 1986.8775 0.87752496 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 1 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 39.073 37.321 2 3.0244E-29 17369 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 203.82 203.82 93318000 0 0 0 0 0 0 10865000 9383300 10060000 0 0 0 10786000 10207000 12389000 0 0 0 9148400 9118400 11362000 0 0 0 18112 1172 17552 336503;336504;336505;336506;336507;336508;336509;336510;336511 205056;205057;205058;205059;205060 205060 5 SDDMSMGLPSSAGEHGVLR Unmodified 1944.867 0.86696028 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 2 2 2 2 2 2 30.901 29.55 2;3 4.0406E-19 13365 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 180.09 180.09 554610000 23777000 15160000 17820000 0 0 0 27991000 29684000 34453000 0 0 0 65326000 66217000 64682000 0 0 0 67265000 74344000 67894000 0 0 0 18113 1172 17552 336512;336513;336514;336515;336516;336517;336518;336519;336520;336521;336522;336523;336524;336525;336526;336527;336528;336529;336530;336531;336532 205061;205062;205063;205064;205065;205066;205067;205068 205066 8 SDDNSHSSDTISNK Unmodified 1505.623 0.62300806 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 6.0566 6.91 2 8.1633E-35 1207 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 250.51 249.42 42521000 4334900 3587200 3673100 0 0 0 8402700 9249200 7904300 0 0 0 1809800 1090700 1653400 0 0 0 0 0 815980 0 0 0 18114 839 17553 336533;336534;336535;336536;336537;336538;336539;336540;336541;336542 205069;205070;205071;205072;205073;205074 205070 6 SDDTHNHSVLFNR Unmodified 1540.7019 0.7018675 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 3 3 3 3 3 3 13.74 14.638 2;3;4 1.468E-32 4659 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 270.56 263.43 1952300000 240320000 198000000 169370000 1471700 1080300 1196100 205600000 209410000 210210000 0 0 0 97286000 106510000 88105000 0 0 0 145740000 141390000 136620000 0 0 0 18115 1100 17554 336543;336544;336545;336546;336547;336548;336549;336550;336551;336552;336553;336554;336555;336556;336557;336558;336559;336560;336561;336562;336563;336564;336565;336566;336567;336568;336569;336570;336571;336572;336573;336574;336575;336576;336577;336578;336579;336580;336581;336582;336583;336584 205075;205076;205077;205078;205079;205080;205081;205082;205083;205084;205085;205086;205087;205088;205089;205090;205091;205092;205093;205094;205095;205096;205097;205098;205099 205081 25 SDDVALPLEFTDAAANK Unmodified 1775.8578 0.85775902 719 P0ACC3 erpA Iron-sulfur cluster insertion protein ErpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 1 3 1 2 2 2 1 1 1 2 2 2 2 1 1 47.345 45.957 2;3 1.1843E-06 21376 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 127.56 126.57 1852900000 222360000 183810000 178660000 7651200 8122200 8146300 119830000 112050000 108740000 12320000 16141000 10507000 123720000 107200000 104500000 3633900 2712800 3430800 164730000 166310000 162990000 9013200 8223900 8105500 18116 719 17555 336585;336586;336587;336588;336589;336590;336591;336592;336593;336594;336595;336596;336597;336598;336599;336600;336601;336602;336603;336604;336605;336606;336607;336608;336609;336610;336611;336612;336613;336614;336615;336616;336617;336618;336619;336620;336621;336622;336623;336624;336625 205100;205101;205102;205103;205104;205105;205106;205107;205108;205109;205110;205111;205112;205113;205114;205115;205116;205117;205118;205119;205120;205121;205122;205123;205124;205125 205125 24 SDDVNGR Unmodified 761.3304 0.33039528 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 9.376 9.651 2 8.4702E-06 1770 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 188.61 188.61 857020000 34193000 32008000 31735000 0 0 0 0 0 0 58503000 46643000 42414000 0 0 0 75764000 241820000 83040000 0 0 0 67482000 74017000 69400000 18117 463 17556 336626;336627;336628;336629;336630;336631;336632;336633;336634;336635;336636;336637 205126;205127;205128;205129;205130;205131;205132;205133;205134;205135;205136 205128 9 SDDYESFSR Unmodified 1104.436 0.43598256 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.795 19.156 2 0.00097895 7279 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 96.311 78.325 118160000 24563000 20878000 19350000 0 0 0 11969000 12250000 13775000 1645300 1127600 1423200 2489500 2438500 1986200 0 0 0 0 0 4260200 0 0 0 18118 1377 17557 336638;336639;336640;336641;336642;336643;336644;336645;336646;336647;336648;336649;336650 205137;205138;205139 205137 3 SDELGLTLR Unmodified 1002.5346 0.53457439 1593 P50466 aer Aerotaxis receptor yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.222 30.316 2 0.0088269 10377 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 66.27 54.859 38628000 8503500 9096900 12021000 2002000 1692000 2146000 0 0 0 0 0 0 0 1017000 0 878210 758940 511640 0 0 0 0 0 0 18119 1593 17558 336651;336652;336653;336654;336655;336656;336657;336658;336659;336660 205140;205141 205140 2 SDEVLSDR Unmodified 919.42469 0.42468959 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.091 14.001 2 0.00035992 4036 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 143.61 134.69 2077900000 173350000 181500000 199070000 5364700 4816100 3948600 204720000 168720000 166050000 0 0 0 161030000 145020000 127760000 0 0 0 172180000 187970000 176370000 0 0 0 18120 62 17559 336661;336662;336663;336664;336665;336666;336667;336668;336669;336670;336671;336672;336673;336674;336675 205142;205143;205144;205145;205146;205147;205148;205149;205150;205151 205150 9 SDFAQMLDAHANFLR Unmodified 1734.8148 0.81478877 481 P0A912 pal Peptidoglycan-associated lipoprotein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 45.43 44.055 2;3 2.5935E-09 21522 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 172.61 164.88 611430000 36388000 40767000 40371000 0 0 3054500 24632000 23505000 27702000 7717400 9249100 5992000 41064000 50818000 33876000 3518500 3488800 2676100 82366000 91297000 82948000 0 0 0 18121 481 17560 336676;336677;336678;336679;336680;336681;336682;336683;336684;336685;336686;336687;336688;336689;336690;336691;336692;336693;336694;336695;336696;336697;336698;336699;336700;336701;336702;336703;336704;336705;336706 205152;205153;205154;205155;205156;205157;205158;205159;205160;205161;205162;205163;205164;205165;205166;205167;205168 205156 16 SDFDLTPFR Unmodified 1096.5189 0.51892433 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.233 40.357 2 1.1389E-07 19671 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 180.93 176.99 337510000 41325000 31789000 31435000 0 0 0 25279000 21074000 21412000 1040200 1317000 1302200 23786000 26396000 24724000 0 0 0 29902000 26440000 30284000 0 0 0 18122 1550 17561 336707;336708;336709;336710;336711;336712;336713;336714;336715;336716;336717;336718;336719;336720;336721 205169;205170;205171;205172;205173;205174;205175;205176;205177;205178 205173 10 SDGLTFHYK Unmodified 1066.5084 0.50835964 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 1 1 19.422 19.8 2;3 0.00061972 7904 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.57 100.26 529640000 36340000 35612000 30276000 2475200 2583900 2928400 52126000 53108000 51939000 4037600 1841600 4148000 31180000 35837000 28289000 0 0 0 48141000 55647000 47945000 1732800 2013000 1438200 18123 804 17562 336722;336723;336724;336725;336726;336727;336728;336729;336730;336731;336732;336733;336734;336735;336736;336737;336738;336739;336740;336741;336742;336743;336744;336745;336746;336747;336748;336749;336750;336751;336752;336753;336754;336755;336756;336757;336758;336759 205179;205180;205181;205182;205183;205184;205185 205180 7 SDIALIQIQNPK Unmodified 1338.7507 0.75071518 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.912 34.134 2 1.4162E-11 15787 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 181.41 172.05 2235200000 154370000 134880000 147300000 17843000 17014000 16990000 171010000 174180000 163170000 55754000 50146000 55618000 134550000 133210000 148130000 0 0 0 185790000 174420000 182720000 39030000 40532000 38584000 18124 1044 17563 336760;336761;336762;336763;336764;336765;336766;336767;336768;336769;336770;336771;336772;336773;336774;336775;336776;336777;336778;336779;336780 205186;205187;205188;205189;205190;205191;205192;205193;205194;205195;205196;205197;205198;205199;205200;205201;205202 205200 17 SDIGWGSQIR Unmodified 1117.5516 0.55162144 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.827 26.73 2 4.7096E-06 12564 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.26 125.73 1604800000 165350000 166890000 141490000 0 0 0 0 121280000 122730000 0 0 0 153100000 129160000 129800000 0 0 0 165670000 151530000 157790000 0 0 0 18125 149 17564 336781;336782;336783;336784;336785;336786;336787;336788;336789;336790;336791;336792 205203;205204;205205;205206;205207;205208;205209;205210;205211;205212;205213 205203 11 SDILNAVGITLDETTTR Unmodified 1817.9371 0.93707198 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 1 1 2 2 2 1 2 2 2 2 2 1 1 2 1 2 1 1 1 51.869 50.639 2;3 4.5708E-20 23697 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 251.91 232.25 1609200000 29784000 131330000 105330000 11508000 9212000 8068700 157000000 154390000 151090000 9969500 8697200 11805000 142900000 120300000 145730000 3757800 0 4359600 168260000 43389000 170710000 7301100 7495200 6818800 18126 1409 17565 336793;336794;336795;336796;336797;336798;336799;336800;336801;336802;336803;336804;336805;336806;336807;336808;336809;336810;336811;336812;336813;336814;336815;336816;336817;336818;336819;336820;336821;336822;336823;336824;336825;336826;336827;336828 205214;205215;205216;205217;205218;205219;205220;205221;205222;205223;205224;205225;205226;205227;205228;205229;205230;205231;205232;205233 205230 20 SDIPVFVGSSK Unmodified 1134.5921 0.59208927 191 P08660 lysC Lysine-sensitive aspartokinase 3 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 31.944 30.516 2 0.039431 14552 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 50.108 39.877 77396000 6591900 0 0 0 0 0 13484000 15022000 10391000 0 0 0 7555900 4716400 0 0 0 0 10514000 0 9120400 0 0 0 18127 191 17566 336829;336830;336831;336832;336833;336834;336835;336836 205234;205235 205234 2 SDIQMIFQDPLASLNPR Unmodified 1943.9775 0.977497 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 2 2 1 2 1 2 1 1 1 1 1 2 2 2 54.865 53.443 2;3 4.0996E-24 19549 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 234.41 219.53 275790000 17393000 67181000 0 30507000 30915000 33123000 3870300 0 0 17218000 8181800 16259000 3677400 0 2976200 0 0 0 3789900 6933100 9625300 7769800 7827800 8538800 18128 1935 17567 336837;336838;336839;336840;336841;336842;336843;336844;336845;336846;336847;336848;336849;336850;336851;336852;336853;336854;336855;336856;336857;336858;336859;336860;336861;336862 205236;205237;205238;205239;205240;205241 205241 6 SDISISVSELGSLLDHSGPHK Unmodified 2177.0964 0.096426166 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 1 1 1 47.356 45.699 3;4 6.1971E-22 22575 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 170.53 162.63 463880000 15514000 0 0 0 0 0 111950000 115590000 43841000 3272000 3907600 2938500 74349000 64042000 23730000 0 0 0 4061700 0 0 0 681530 0 18129 520 17568 336863;336864;336865;336866;336867;336868;336869;336870;336871;336872;336873;336874;336875;336876;336877;336878;336879;336880;336881;336882 205242;205243;205244;205245;205246;205247;205248;205249 205246 8 SDKASEGELLAQVEPEDLIK Unmodified 2170.1005 0.10050849 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 43.151 41.003 3 0.0028607 14549 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 55.206 54.419 20174000 0 0 0 2093800 2335400 2174200 0 0 0 4940200 4061000 4569600 0 0 0 0 0 0 0 0 0 0 0 0 18130 244 17569 336883;336884;336885;336886;336887;336888 205250 205250 1 SDKIIHLTDDSFDTDVLK Unmodified 2061.0266 0.026615266 571 P0AA25 trxA Thioredoxin-1 yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 1 1 2 2 1 1 2 2 36.377 34.832 3;4 0.001458 13949 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 61.767 56.963 131250000 0 0 0 13942000 12037000 10522000 0 0 0 15522000 13620000 9968000 0 0 0 5287200 7135600 6782400 1282900 0 0 7663700 10936000 16556000 18131 571 17570 336889;336890;336891;336892;336893;336894;336895;336896;336897;336898;336899;336900;336901;336902;336903;336904;336905;336906;336907;336908;336909;336910 205251;205252;205253;205254 205252 3 SDKLPEYTPDVNQLYDALYNK Unmodified 2485.2013 0.20128517 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 1 49.068 47.703 2;3 4.8277E-11 22238 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 132.01 129.18 1579300000 77413000 90918000 82248000 0 0 0 140990000 150460000 133450000 0 0 0 179930000 169070000 221520000 0 0 0 113850000 113400000 106050000 0 0 0 18132 213 17571 336911;336912;336913;336914;336915;336916;336917;336918;336919;336920;336921;336922;336923;336924;336925;336926;336927;336928;336929;336930 205255;205256;205257;205258;205259;205260;205261;205262;205263;205264;205265;205266;205267 205267 13 SDLALALK Unmodified 829.49092 0.49091866 203 P09148 galT Galactose-1-phosphate uridylyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 2 1 1 1 1 28.518 27.221 2 0.0098009 12908 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 79.451 53.322 148760000 20092000 17953000 17758000 0 0 0 18931000 20506000 21987000 0 0 0 0 6371600 6489900 0 0 0 8823700 9848400 0 0 0 0 18133 203 17572 336931;336932;336933;336934;336935;336936;336937;336938;336939;336940;336941 205268;205269;205270;205271;205272 205269 5 SDLALELDGAK Unmodified 1130.5819 0.58191851 650 P0ABD3 bfr Bacterioferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.997 30.419 2 0.00020622 13819 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 103.7 64.678 658660000 88953000 78956000 77789000 766440 605860 582790 80039000 76109000 73250000 7162600 7163700 7462000 25308000 26415000 0 0 0 0 40172000 33715000 33242000 0 0 968410 18134 650 17573 336942;336943;336944;336945;336946;336947;336948;336949;336950;336951;336952;336953;336954;336955;336956;336957;336958;336959 205273;205274;205275;205276;205277;205278;205279;205280;205281;205282;205283 205282 4 SDLEMQYETLQEELMALK Unmodified 2170.0174 0.017372488 16 CON__P35527 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 2 2 2 54.968 53.505 2;3 4.455E-55 21765 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 273.3 237.02 222790000 0 0 0 1119700 0 0 0 0 0 76554000 61332000 27996000 0 0 0 0 0 0 0 0 0 19994000 19057000 16736000 + 18135 16 17574 336960;336961;336962;336963;336964;336965;336966;336967;336968;336969;336970;336971 205284;205285;205286;205287;205288;205289;205290 205284 3 SDLEMQYETLQEELMALKK Unmodified 2298.1123 0.11233551 16 CON__P35527 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 3 1 1 1 1 1 52.053 50.755 2;3;4 1.1996E-36 20634 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 283.19 275.98 1377800000 0 0 0 14056000 0 10505000 0 0 0 357380000 331290000 309710000 0 0 0 11117000 0 11195000 0 0 0 139060000 93328000 100220000 + 18136 16 17575 336972;336973;336974;336975;336976;336977;336978;336979;336980;336981;336982;336983;336984;336985;336986;336987;336988 205291;205292;205293;205294;205295;205296;205297;205298;205299;205300;205301;205302;205303;205304 205294 14 SDLEMQYETLQEELMALKK Oxidation (M) 2314.1073 0.10725013 16 CON__P35527 yes yes 0 1 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 51 49.606 3 0.00010471 20095 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 68.567 65.67 48786000 0 0 0 1407900 1227900 1425600 0 0 0 11399000 9675300 8205300 0 0 0 0 0 0 0 0 0 5941400 4834100 4669000 + 18137 16 17575 336989;336990;336991;336992;336993;336994;336995;336996;336997 205305 205305 7 1 SDLFNVNAGIVK Unmodified 1275.6823 0.68230126 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 1 1 1 39.408 37.671 2;3 5.6928E-06 18714 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.23 123.53 11099000000 1756400000 1681900000 1674200000 4620000 5394600 5573100 694510000 700620000 689680000 2783800 2275100 0 426000000 397650000 383750000 0 0 0 907210000 857670000 904030000 2082400 1213600 1578300 18138 1642 17576 336998;336999;337000;337001;337002;337003;337004;337005;337006;337007;337008;337009;337010;337011;337012;337013;337014;337015;337016;337017;337018;337019;337020;337021;337022;337023;337024;337025;337026;337027 205306;205307;205308;205309;205310;205311;205312;205313;205314;205315;205316;205317;205318;205319;205320;205321;205322;205323 205308 18 SDLGGTMR Unmodified 835.3858 0.38580166 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.814 13.655 2 7.1172E-05 4073 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.86 148.05 2579200000 137930000 107590000 107160000 0 0 0 246970000 245070000 234220000 0 0 0 237300000 185310000 201920000 0 0 0 299370000 288550000 287800000 0 0 0 18139 337 17577 337028;337029;337030;337031;337032;337033;337034;337035;337036;337037;337038;337039 205324;205325;205326;205327;205328;205329;205330;205331;205332;205333;205334;205335 205328 12 SDLMPIR Unmodified 830.43202 0.43202358 1915 P77544 yfcF Glutathione S-transferase YfcF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 24.941 23.94 2 0.011149 10458 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.086 53.616 86740000 13689000 12316000 11154000 0 0 0 7910500 8295600 8813500 0 0 0 5090700 0 4466400 0 0 0 4965000 4728000 5311700 0 0 0 18140 1915 17578 337040;337041;337042;337043;337044;337045;337046;337047;337048;337049;337050 205336;205337;205338;205339;205340 205340 5 SDLSADINEHLIVELYSK Unmodified 2045.0317 0.031700644 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 5 5 3 2 2 2 3 4 4 3 1 4 4 3 3 3 2 4 2 5 2 3 3 49.495 48.249 2;3 1.4711E-13 22956 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.97 135.22 725680000 86984000 86733000 89237000 8038300 6814700 8922700 15715000 22621000 35401000 8052200 23421000 6280000 46561000 41612000 25019000 13477000 6126900 4395000 53973000 26897000 53821000 17933000 20340000 17300000 18141 375 17579 337051;337052;337053;337054;337055;337056;337057;337058;337059;337060;337061;337062;337063;337064;337065;337066;337067;337068;337069;337070;337071;337072;337073;337074;337075;337076;337077;337078;337079;337080;337081;337082;337083;337084;337085;337086;337087;337088;337089;337090;337091;337092;337093;337094;337095;337096;337097;337098;337099;337100;337101;337102;337103;337104;337105;337106;337107;337108;337109;337110;337111;337112;337113;337114;337115;337116;337117;337118;337119;337120;337121;337122;337123;337124;337125 205341;205342;205343;205344;205345;205346;205347;205348;205349;205350;205351;205352;205353;205354;205355;205356;205357;205358;205359;205360;205361;205362;205363;205364;205365;205366 205361 24 SDLVNDGK Unmodified 846.40831 0.40831125 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.784 12.287 2 0.00023486 2794 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 150.84 96.312 461310000 0 0 95446000 0 9770200 0 5151000 4071700 4663900 86251000 73053000 72597000 0 5091700 5518700 0 50831000 6057100 0 0 0 14956000 15213000 12638000 18142 1944 17580 337126;337127;337128;337129;337130;337131;337132;337133;337134;337135;337136;337137;337138;337139;337140 205367;205368;205369;205370;205371;205372;205373;205374;205375 205369 9 SDNAQLTGLCDR Unmodified 1348.6041 0.60412729 1335 P30014 rnt Ribonuclease T yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 20.832 21.129 2 5.0761E-17 8610 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 215.83 206.96 191090000 18874000 0 15141000 0 0 0 13325000 15929000 17011000 0 0 0 16285000 14967000 17233000 0 981730 1145100 22588000 20737000 16876000 0 0 0 18143 1335 17581 337141;337142;337143;337144;337145;337146;337147;337148;337149;337150;337151;337152;337153;337154 205376;205377;205378;205379;205380;205381;205382;205383;205384 205377 6 SDNDELQQIAHLR Unmodified 1537.7485 0.74848335 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 2 2 2 2 2 1 2 1 1 1 2 1 2 1 2 30.814 29.38 2;3 5.5006E-24 13754 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 283.58 276.37 362970000 17826000 48588000 10272000 0 1088000 0 10743000 9912700 13724000 7912600 10203000 8405500 34539000 33262000 7094100 6485300 5244900 6760500 9643900 61335000 32018000 8582300 7863900 11464000 18144 944 17582 337155;337156;337157;337158;337159;337160;337161;337162;337163;337164;337165;337166;337167;337168;337169;337170;337171;337172;337173;337174;337175;337176;337177;337178;337179;337180;337181;337182;337183;337184;337185;337186 205385;205386;205387;205388;205389;205390;205391;205392;205393;205394;205395;205396;205397;205398;205399;205400;205401;205402;205403;205404 205394 20 SDNDELQQIAHLR Acetyl (Protein N-term) 1579.759 0.75904803 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 39.715 37.963 2 1.7905E-18 18562 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 223.87 208.3 61319000 9038000 7223100 11108000 0 0 0 3985100 4610600 5586700 0 0 0 4220500 3038400 3525300 0 0 0 2522700 5033500 0 697320 729520 0 18145 944 17582 337187;337188;337189;337190;337191;337192;337193;337194;337195;337196;337197;337198;337199 205405;205406;205407;205408 205406 3 SDNDTIVAQATPPGR Unmodified 1540.7481 0.74814899 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.382 21.846 2 4.4693E-06 9189 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.13 96.235 129200000 15307000 16735000 13134000 0 0 0 12143000 11209000 11390000 0 0 0 8514500 7088700 7538500 0 0 0 9531200 8312000 8301200 0 0 0 18146 1256 17583 337200;337201;337202;337203;337204;337205;337206;337207;337208;337209;337210;337211 205409 205409 1 SDNDYAQLVK Unmodified 1151.5459 0.54586736 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.985 23.088 2 0.00023669 10078 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.89 104.93 1069000000 116500000 120720000 122910000 0 0 457440 119500000 104630000 104260000 0 0 0 49561000 49630000 39936000 0 0 0 97855000 75746000 67263000 0 0 0 18147 1170 17584 337212;337213;337214;337215;337216;337217;337218;337219;337220;337221;337222;337223;337224 205410;205411;205412;205413;205414;205415;205416;205417;205418;205419;205420;205421 205416 12 SDNLKTEMDEYIR Unmodified 1612.7403 0.74028643 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 30.874 29.469 2;3 1.276E-12 11261 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 198.81 195.28 653690000 10044000 7049000 6714700 20869000 23466000 22376000 22674000 25383000 19101000 66671000 68606000 71655000 19380000 21022000 24625000 14234000 15210000 12076000 26168000 25062000 24118000 33134000 35158000 38893000 18148 1742 17585 337225;337226;337227;337228;337229;337230;337231;337232;337233;337234;337235;337236;337237;337238;337239;337240;337241;337242;337243;337244;337245;337246;337247;337248;337249;337250;337251;337252;337253;337254;337255;337256;337257;337258;337259;337260;337261;337262;337263;337264;337265;337266;337267;337268;337269;337270 205422;205423;205424;205425;205426;205427;205428;205429;205430;205431;205432;205433;205434;205435;205436;205437;205438;205439;205440;205441;205442;205443;205444 205426 20 SDNPSITR Unmodified 888.43011 0.43010932 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.574 12.344 2 0.017076 3343 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 67.494 36.757 203050000 14523000 16071000 9029300 0 0 0 19088000 15401000 19848000 0 0 0 18259000 17862000 16020000 0 0 1469000 15506000 20613000 19356000 0 0 0 18149 244 17586 337271;337272;337273;337274;337275;337276;337277;337278;337279;337280;337281;337282;337283 205445;205446;205447;205448 205446 4 SDNVIFSATGITK Unmodified 1351.6983 0.69834526 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 36.188 34.661 2 3.2369E-05 16936 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.48 106.99 355680000 21647000 0 20109000 0 0 0 0 48342000 41505000 0 0 0 41240000 36993000 40420000 0 0 0 35060000 35014000 35350000 0 0 0 18150 509 17587 337284;337285;337286;337287;337288;337289;337290;337291;337292;337293 205449;205450;205451;205452;205453;205454;205455;205456 205449 8 SDNYPLR Unmodified 863.41373 0.41373097 1378 P31680 djlA DnaJ-like protein DjlA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.526 15.234 2 0.010377 4722 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 86.866 70.712 35937000 0 0 0 483710 495960 570040 4959600 3712100 3857700 1330400 1330700 0 3850300 2830900 3969800 0 0 0 4589300 0 3956100 0 0 0 18151 1378 17588 337294;337295;337296;337297;337298;337299;337300;337301;337302;337303;337304;337305;337306 205457;205458 205458 1 SDQQQPPVYK Unmodified 1188.5775 0.57750184 166 P07649 truA tRNA pseudouridine synthase A yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 12.85 13.733 2 0.16678 3910 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 39.547 32.651 28744000 4444800 0 3967800 0 0 0 0 4588400 0 0 0 0 3790500 2449700 2412800 0 0 0 0 7090200 0 0 0 0 18152 166 17589 337307;337308;337309;337310;337311;337312;337313 205459;205460 205460 1 SDRDPQHAR Unmodified 1080.5061 0.50606823 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 1 7.1753 7.636 2;3 0.00037811 922 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.92 104.3 77884000 0 0 0 659310 534890 624290 2410800 2504000 2171600 7898000 5630100 7413800 3338700 2443200 2798400 2249100 2253600 2224900 6882900 6469300 7241000 4948700 4033000 3154800 18153 690 17590 337314;337315;337316;337317;337318;337319;337320;337321;337322;337323;337324;337325;337326;337327;337328;337329;337330;337331;337332;337333;337334;337335;337336;337337;337338;337339;337340;337341;337342 205461;205462;205463;205464;205465;205466;205467 205466 6 SDSIVQPR Unmodified 900.46649 0.46649483 586 P0AAC4 ybhL Inner membrane protein YbhL yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.482 14.117 2 3.551E-05 4374 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 173.93 162.86 419120000 13716000 13554000 13758000 4777200 3484600 4606800 62796000 64715000 61890000 16346000 16462000 19095000 19853000 21872000 16478000 2353900 0 2165400 17717000 19338000 13263000 3919100 3594200 3368000 18154 586 17591 337343;337344;337345;337346;337347;337348;337349;337350;337351;337352;337353;337354;337355;337356;337357;337358;337359;337360;337361;337362;337363;337364;337365 205468;205469;205470;205471;205472;205473;205474;205475;205476;205477;205478;205479;205480 205471 13 SDSLDISWLK Unmodified 1162.587 0.58700389 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.926 44.452 2 5.3499E-05 21662 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.77 128.03 280490000 15157000 12967000 13785000 0 0 0 18139000 20224000 17355000 0 0 0 28844000 26468000 27220000 0 0 0 34469000 36710000 29155000 0 0 0 18155 194 17592 337366;337367;337368;337369;337370;337371;337372;337373;337374;337375;337376;337377 205481;205482;205483;205484;205485;205486;205487;205488;205489;205490;205491;205492 205485 12 SDSQTLVVK Unmodified 975.52368 0.52367535 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 2 1 1 1 1 2 1 1 1 1 1 1 1 14.571 15.344 2 0.0048751 5165 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 76.478 43.868 562210000 60642000 79854000 49147000 660620 0 0 45003000 72118000 48036000 0 0 0 30691000 28565000 28658000 0 0 0 42414000 38526000 37896000 0 0 0 18156 328 17593 337378;337379;337380;337381;337382;337383;337384;337385;337386;337387;337388;337389;337390;337391;337392 205493;205494;205495 205494 3 SDSRENLR Unmodified 975.47337 0.47337112 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 3 1 1 1 1 1 1 1 1 1 8.1452 8.7272 1;2 0.00033823 953 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 153.71 99.506 6325000000 0 0 0 1319300000 1291700000 869760000 0 0 0 66598000 55896000 59641000 0 0 0 0 26953000 22053000 0 0 0 916900000 858670000 837620000 18157 939 17594 337393;337394;337395;337396;337397;337398;337399;337400;337401;337402;337403;337404;337405;337406;337407;337408 205496;205497;205498;205499;205500;205501;205502;205503;205504;205505;205506;205507;205508 205506 13 SDSTWHGFK Unmodified 1063.4723 0.47230849 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 2 2 2 1 2 2 1 1 15.898 16.699 2;3 0.0060438 5967 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 82.279 79.166 343310000 6401000 2377700 2807500 0 0 0 86143000 78304000 72410000 0 0 0 21083000 35777000 34500000 0 0 0 1859700 1651700 0 0 0 0 18158 520 17595 337409;337410;337411;337412;337413;337414;337415;337416;337417;337418;337419;337420;337421;337422;337423;337424;337425 205509;205510;205511;205512;205513;205514;205515;205516;205517 205510 9 SDSVAALQR Unmodified 945.48796 0.48795855 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.8 15.348 2 0.11998 5146 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 45.081 30.306 52242000 4430800 0 3636300 935900 960820 0 9737900 12621000 11639000 2192400 3018700 3068900 0 0 0 0 0 0 0 0 0 0 0 0 18159 1980 17596 337426;337427;337428;337429;337430;337431;337432;337433;337434;337435 205518 205518 0 SDTGPLDPECDCYTCR Unmodified 1944.7288 0.72881182 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By MS/MS 1 27.326 27.326 2 0.000118 9215 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 92.19 92.19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18160 395 17597 337436 205519 205519 1 SDTTILQNSTHVIKPK Unmodified 1780.9683 0.96831253 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 19.167 19.766 3 0.002226 7498 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 46.324 46.324 103200000 35504000 34894000 32801000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18161 1374 17598 337437;337438;337439 205520;205521;205522 205521 3 SDTTILQNSTHVIKPK Acetyl (Protein N-term) 1822.9789 0.97887721 1374 P31660 prpC 2-methylcitrate synthase yes yes 1 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 27.799 26.745 2;3 1.653E-13 12220 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 206.69 201.8 763230000 272210000 268430000 218880000 1111200 1478100 1127200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18162 1374 17598 337440;337441;337442;337443;337444;337445;337446;337447;337448 205523;205524;205525;205526;205527 205524 5 SDTVTRPSR Unmodified 1017.5203 0.52032131 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 5.1667 6.0545 2 0.0015108 1271 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.997 68.811 75968000 0 0 0 0 0 0 27002000 24594000 24372000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18163 1778 17599 337449;337450;337451 205528;205529;205530 205528 3 SDTYGWQEDSTYIR Unmodified 1719.7376 0.73764389 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.692 33.244 2 5.2574E-35 15777 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 257.92 257.92 1274400000 339150000 323500000 279320000 0 0 0 58353000 66320000 62298000 0 0 0 13882000 12966000 14140000 0 0 0 34005000 35870000 34622000 0 0 0 18164 1254 17600 337452;337453;337454;337455;337456;337457;337458;337459;337460;337461;337462;337463 205531;205532;205533;205534;205535;205536;205537;205538;205539;205540;205541;205542 205538 12 SDVELER Unmodified 846.40831 0.40831125 1623 P60560 guaC GMP reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.297 14.163 2 0.0047017 4318 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 102.71 62.61 1312700000 158850000 141260000 134590000 0 0 0 106510000 106460000 95710000 0 0 0 99585000 107410000 95234000 0 0 0 142570000 123240000 1311300 0 0 0 18165 1623 17601 337464;337465;337466;337467;337468;337469;337470;337471;337472;337473;337474;337475 205543;205544;205545;205546;205547 205547 2 SDVFHLGLTK Unmodified 1115.5975 0.597509 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 2 1 31.265 29.74 2;3 0.00010656 14150 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.28 116.07 27281000000 420310000 369390000 391640000 0 2888300 2046800 4505000000 4456100000 4224600000 2671700 0 2947100 2209300000 2055500000 2184200000 0 0 0 2141900000 2172700000 2135600000 542050 2541800 1217000 18166 1079 17602 337476;337477;337478;337479;337480;337481;337482;337483;337484;337485;337486;337487;337488;337489;337490;337491;337492;337493;337494;337495;337496;337497;337498;337499;337500;337501;337502;337503;337504;337505;337506;337507;337508;337509 205548;205549;205550;205551;205552;205553;205554;205555;205556;205557;205558;205559;205560;205561;205562;205563;205564;205565;205566;205567;205568;205569;205570;205571;205572;205573;205574;205575;205576;205577;205578;205579;205580 205557 33 SDVIEIR Unmodified 830.44978 0.44978213 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 21.723 21.562 2 0.00022693 8735 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 163.84 121.12 6010000000 0 0 0 0 0 0 570850000 559380000 518670000 1870900 1885800 1606600 813350000 688360000 682110000 0 0 0 649840000 740380000 781710000 0 0 0 18167 771 17603 337510;337511;337512;337513;337514;337515;337516;337517;337518;337519;337520;337521;337522;337523;337524;337525;337526 205581;205582;205583;205584;205585;205586;205587;205588;205589;205590;205591;205592 205586 12 SDVLFNFNK Unmodified 1082.5397 0.53965977 480 P0A910 ompA Outer membrane protein A yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.164 35.548 2 6.5425E-05 13672 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 145.04 124.42 4898600000 259390000 223430000 223440000 61763000 63847000 58575000 181030000 166130000 184270000 118750000 126560000 125890000 296120000 299980000 290680000 52529000 44311000 52983000 587030000 588990000 634620000 89676000 84239000 84340000 18168 480 17604 337527;337528;337529;337530;337531;337532;337533;337534;337535;337536;337537;337538;337539;337540;337541;337542;337543;337544;337545;337546;337547;337548;337549;337550 205593;205594;205595;205596;205597;205598;205599;205600;205601;205602;205603;205604;205605;205606;205607;205608;205609;205610;205611;205612;205613;205614 205604 21 SDVLRPYR Unmodified 1004.5403 0.54032847 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 14.79 15.531 2 0.0034435 5160 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.21 81.717 211860000 22574000 21979000 29366000 0 0 0 27424000 33762000 37432000 0 0 0 20278000 0 19041000 0 0 0 0 0 0 0 0 0 18169 563 17605 337551;337552;337553;337554;337555;337556;337557;337558 205615;205616;205617 205617 3 SDVMVVGFDGTPDGEK Oxidation (M) 1667.7349 0.7348667 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 1 0 By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 2 1 2 1 1 1 1 1 3 1 1 1 31.687 30.389 2 2.6734E-10 13778 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 151.26 149.12 106970000 16426000 5213400 10851000 0 0 0 9953300 7215700 7519500 0 0 0 6923800 6233700 16319000 0 0 0 5829200 6825100 7664700 0 0 0 18170 72 17606 337559;337560;337561;337562;337563;337564;337565;337566;337567;337568;337569;337570;337571;337572;337573;337574 205618;205619;205620;205621;205622 205620 33 3 SDVMVVGFDGTPDGEK Unmodified 1651.74 0.73995207 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.974 35.253 2 2.1527E-13 17200 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 198.57 192.85 3894600000 386560000 364210000 322840000 0 0 0 280250000 282030000 267020000 0 0 388680 373890000 340720000 342890000 0 0 0 328600000 302790000 301790000 0 0 595550 18171 72 17606 337575;337576;337577;337578;337579;337580;337581;337582;337583;337584;337585;337586;337587;337588 205623;205624;205625;205626;205627;205628;205629;205630;205631;205632;205633;205634 205625 12 SDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAK Unmodified 4123.0269 0.026870593 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 3 3 3 1 2 3 3 3 3 3 3 1 1 38.339 36.595 4;5;6 8.1441E-30 18135 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.66 170.08 13737000000 842830000 1052700000 960700000 0 0 1840500 1835600000 1598900000 1585200000 0 2074500 4334300 781440000 798460000 600770000 0 0 0 1245700000 1290100000 1131500000 2535200 2395700 0 18172 634 17607 337589;337590;337591;337592;337593;337594;337595;337596;337597;337598;337599;337600;337601;337602;337603;337604;337605;337606;337607;337608;337609;337610;337611;337612;337613;337614;337615;337616;337617;337618;337619;337620;337621;337622;337623;337624;337625;337626;337627;337628;337629;337630 205635;205636;205637;205638;205639;205640;205641;205642;205643;205644;205645;205646;205647;205648;205649;205650;205651;205652;205653;205654;205655;205656;205657;205658;205659;205660;205661;205662;205663;205664;205665;205666;205667;205668;205669;205670;205671;205672;205673;205674 205637 40 SDVQAAK Unmodified 717.36572 0.36571815 1740 P69776 lpp Major outer membrane lipoprotein Lpp yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 8.2056 8.6889 2 0.017717 1812 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 79.454 56.831 438100000 0 0 0 13081000 17307000 15055000 0 43682000 38713000 64810000 45984000 49352000 0 0 0 13974000 13720000 14710000 20869000 0 0 28833000 21843000 36165000 18173 1740 17608 337631;337632;337633;337634;337635;337636;337637;337638;337639;337640;337641;337642;337643;337644;337645;337646 205675;205676;205677;205678;205679;205680;205681;205682 205677 8 SDVQAAKDDAAR Unmodified 1245.5949 0.59494282 1740 P69776 lpp Major outer membrane lipoprotein Lpp yes yes 0 0 1 By matching By MS/MS By MS/MS By matching 1 1 1 1 10.555 11.334 2 2.1702E-11 2046 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 183.85 169.65 128100000 0 0 0 41666000 43354000 37117000 0 0 0 0 0 0 0 0 0 0 5966300 0 0 0 0 0 0 0 18174 1740 17609 337647;337648;337649;337650 205683;205684 205683 2 SDVTPALSEMMQMK Unmodified 1566.7092 0.70918599 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.078 42.632 2 1.6696E-05 16109 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 100.72 91.533 335680000 15041000 15352000 12370000 0 2567500 2898700 16506000 15439000 16162000 9509200 8422900 7152500 32003000 27890000 30176000 3826500 2443400 2603300 34658000 36138000 35783000 8734000 0 0 18175 1876 17610 337651;337652;337653;337654;337655;337656;337657;337658;337659;337660;337661;337662;337663;337664;337665;337666;337667;337668;337669;337670;337671 205685;205686;205687;205688;205689;205690;205691;205692;205693;205694;205695 205685 6 SDWDAYLQWGVEAFR Unmodified 1841.8373 0.83729835 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.359 53.886 2 2.0509E-27 26714 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 242.82 242.82 360080000 23402000 20107000 14041000 0 0 0 96842000 76894000 70747000 0 0 0 7982900 6933100 5391200 0 0 0 14296000 13617000 9825200 0 0 0 18176 1265 17611 337672;337673;337674;337675;337676;337677;337678;337679;337680;337681;337682;337683 205696;205697;205698 205697 3 SDWEIYK Unmodified 939.4338 0.43379771 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 2 2 1 2 2 1 2 1 2 1 1 1 2 2 2 1 1 1 28.451 27.098 1;2 0.0074907 9790 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 106.42 69.387 480430000 16654000 0 1760900 3220600 2765700 3397300 49338000 42303000 38286000 18284000 11683000 9392400 30060000 22039000 30630000 4103300 2627200 2733200 65111000 55108000 54880000 5385600 5237100 5436400 18177 205;1157 17612 337684;337685;337686;337687;337688;337689;337690;337691;337692;337693;337694;337695;337696;337697;337698;337699;337700;337701;337702;337703;337704;337705;337706;337707;337708;337709;337710;337711;337712;337713;337714;337715;337716 205699;205700;205701;205702;205703;205704;205705 205701 4 SDWMEMEK Unmodified 1054.41 0.4099675 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 27.798 26.639 2 0.0029865 12261 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.909 95.909 290700000 23086000 19130000 19450000 0 0 263730 16199000 15767000 17966000 0 0 0 22613000 28217000 22833000 0 0 0 36003000 38902000 30269000 0 0 0 18178 346 17613 337717;337718;337719;337720;337721;337722;337723;337724;337725;337726;337727;337728;337729 205706;205707;205708;205709;205710;205711 205706 6 SDWNPSLYLHFSAER Unmodified 1820.8482 0.84819739 1823 P76145 tam Trans-aconitate 2-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 43.282 41.729 3 0.16539 20153 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 28.212 26.389 55339000 6338500 7036300 7178400 0 0 0 8360300 8763700 6142500 0 0 0 1999200 0 0 0 0 0 3895600 3069300 2555400 0 0 0 18179 1823 17614 337730;337731;337732;337733;337734;337735;337736;337737;337738;337739 205712 205712 0 SDYPNQVNNVLCFPFIFR Unmodified 2229.0677 0.067708995 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 2 2 1 2 2 2 55.377 53.915 2;3 1.7495E-31 26545 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 225.79 218.06 584220000 79954000 86598000 82815000 0 0 0 24486000 18886000 39619000 0 0 0 39562000 35719000 12969000 0 0 0 49835000 56436000 57337000 0 0 0 18180 1872 17615 337740;337741;337742;337743;337744;337745;337746;337747;337748;337749;337750;337751;337752;337753;337754;337755;337756;337757;337758;337759;337760 205713;205714 205714 2 SEADIAAEFTR Unmodified 1208.5673 0.56733108 1922 P77625 yfbT Sugar phosphatase YfbT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 32.597 31.214 2 0.06541 14278 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 46.819 35.225 150610000 18017000 16113000 0 0 0 0 16918000 15584000 15434000 0 0 0 11658000 13369000 0 0 0 0 11362000 15809000 16345000 0 0 0 18181 1922 17616 337761;337762;337763;337764;337765;337766;337767;337768;337769;337770 205715;205716 205716 0 SEAEARPTNFIR Unmodified 1389.7001 0.70007659 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 2 2 2 1 2 1 2 2 2 1 16.96 17.661 2;3 0.11924 6214 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 31.348 23.623 174190000 6544900 10661000 16300000 0 0 0 23167000 21308000 16812000 957470 0 0 9883700 4012300 9607400 0 0 0 21447000 22096000 11398000 0 0 0 18182 63 17617 337771;337772;337773;337774;337775;337776;337777;337778;337779;337780;337781;337782;337783;337784;337785;337786;337787;337788;337789;337790;337791 205717;205718 205718 1 SEAGSYGR Unmodified 825.3617 0.3616954 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.287 11.103 2 3.7226E-05 2417 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 173.59 173.59 1639200000 139530000 128460000 109460000 0 0 0 75922000 116420000 86830000 0 0 0 162700000 155960000 141610000 0 0 0 188900000 163630000 169820000 0 0 0 18183 441 17618 337792;337793;337794;337795;337796;337797;337798;337799;337800;337801;337802;337803 205719;205720;205721;205722;205723;205724;205725;205726;205727;205728;205729;205730 205729 12 SEAIRDILR Unmodified 1071.6037 0.60365701 296 P0A6Z6 nikR Nickel-responsive regulator yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 22.331 21.867 2;3 0.0014221 7702 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 73.985 61.369 70016000 0 0 0 6149000 6496000 6047700 0 0 0 8701200 7581500 6602500 0 0 0 3546100 1573200 2558100 0 0 0 6075000 7688900 6997300 18184 296 17619 337804;337805;337806;337807;337808;337809;337810;337811;337812;337813;337814;337815;337816;337817;337818;337819;337820;337821;337822;337823;337824;337825;337826 205731;205732;205733;205734;205735;205736;205737;205738;205739;205740;205741;205742 205731 12 SEALAYR Unmodified 808.40792 0.40791731 109 P05194 aroD 3-dehydroquinate dehydratase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 13.707 14.582 2 0.0055004 4591 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 99.384 74.752 134140000 16462000 0 15586000 0 0 0 14091000 13893000 16536000 0 0 0 12104000 11747000 9740200 0 0 0 0 12554000 11431000 0 0 0 18185 109 17620 337827;337828;337829;337830;337831;337832;337833;337834;337835;337836 205743;205744 205743 1 SEALLNAGR Unmodified 929.49304 0.49304393 1135 P17115 gutQ Arabinose 5-phosphate isomerase GutQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.955 17.736 2 1.3251E-05 6001 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 162.31 130.24 241640000 17442000 20363000 12632000 0 0 0 0 28304000 25108000 0 0 0 18810000 19977000 15857000 0 0 0 28079000 29550000 25521000 0 0 0 18186 1135 17621 337837;337838;337839;337840;337841;337842;337843;337844;337845;337846;337847;337848 205745;205746;205747;205748;205749;205750;205751;205752;205753;205754;205755 205755 11 SEAPKKR Unmodified 814.4661 0.4661009 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 8.2271 8.44 2 0.018798 1318 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 103.29 89.614 10780000 0 0 0 0 0 0 0 0 0 3018800 3044500 2768500 0 0 0 0 106810 158860 0 0 0 451600 605550 625410 18187 936 17622 337849;337850;337851;337852;337853;337854;337855;337856 205756;205757;205758 205757 3 SEAWWPQLHSFAVGLPGSPDLK Unmodified 2421.2117 0.2117307 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 1 1 1 1 1 1 52.898 51.522 2;3 3.9176E-43 25445 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 234.04 227.76 1153100000 150100000 138510000 104330000 0 2944800 1899600 219750000 198120000 204060000 8254300 6599100 6172100 18974000 16218000 14487000 0 0 0 19549000 19782000 23356000 0 0 0 18188 1191 17623 337857;337858;337859;337860;337861;337862;337863;337864;337865;337866;337867;337868;337869;337870;337871;337872;337873;337874;337875;337876;337877;337878;337879 205759;205760;205761;205762;205763;205764;205765;205766;205767;205768;205769;205770;205771;205772;205773;205774;205775;205776 205765 18 SEDAEAVLK Unmodified 960.47639 0.47639081 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.848 17.607 2 0.00085462 6197 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 91.318 85.878 1074200000 108340000 95664000 0 0 0 0 127500000 124760000 124800000 0 0 0 72664000 60902000 61296000 0 0 0 107730000 97883000 92677000 0 0 0 18189 1903 17624 337880;337881;337882;337883;337884;337885;337886;337887;337888;337889;337890;337891 205777;205778;205779;205780;205781;205782;205783;205784;205785;205786;205787;205788 205785 11 SEDDPQAQELAALIADK Unmodified 1812.8741 0.87413737 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.212 46.875 2;3 1.9435E-24 22925 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 216.88 208.15 932680000 64711000 58943000 64469000 0 0 0 104930000 112880000 97119000 0 0 0 95264000 85355000 83304000 0 0 0 53594000 54658000 57457000 0 0 0 18190 214 17625 337892;337893;337894;337895;337896;337897;337898;337899;337900;337901;337902;337903;337904;337905;337906;337907;337908;337909;337910;337911;337912;337913;337914;337915 205789;205790;205791;205792;205793;205794;205795;205796;205797;205798;205799;205800;205801;205802;205803;205804;205805;205806 205799 18 SEDQVELVEK Unmodified 1174.5717 0.57174776 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.443 19.864 2 0.00019497 7889 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.73 104.37 1692100000 413130000 398200000 380170000 1180800 1363100 1239500 94603000 89372000 90366000 1625600 0 0 22907000 22812000 22629000 0 0 0 49910000 43054000 59542000 0 0 0 18191 1254 17626 337916;337917;337918;337919;337920;337921;337922;337923;337924;337925;337926;337927;337928;337929;337930;337931 205807;205808;205809;205810;205811;205812 205807 3 SEDVVQLAHHVR Unmodified 1388.7161 0.71606101 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 16.084 17.075 2;3 2.2097E-08 6027 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.07 113.54 66726000 0 0 0 0 0 0 0 0 0 0 0 0 0 22650000 21002000 0 0 0 0 23073000 0 0 0 0 18192 186 17627 337932;337933;337934;337935;337936;337937;337938;337939;337940;337941 205813;205814;205815;205816;205817;205818;205819;205820;205821;205822 205820 8 SEEDVAALLEAGVAR Unmodified 1528.7733 0.77330111 1054 P10371 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 48.623 47.33 2;3 6.0275E-05 22303 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 65.472 58.27 48717000 3791200 3270000 2682700 0 0 0 9113800 0 2426400 0 0 0 3872400 3281400 10545000 0 0 0 3764800 3628100 2341100 0 0 0 18193 1054 17628 337942;337943;337944;337945;337946;337947;337948;337949;337950;337951;337952;337953 205823;205824 205823 1 SEEGIVLVTR Unmodified 1101.603 0.60298831 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 27.907 26.679 2 2.2238E-05 12068 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.52 109.73 576400000 69143000 61148000 53784000 0 0 360480 117990000 118170000 104420000 0 0 0 0 51389000 0 0 0 0 0 0 0 0 0 0 18194 283 17629 337954;337955;337956;337957;337958;337959;337960;337961;337962;337963;337964;337965;337966 205825;205826;205827;205828;205829;205830;205831;205832;205833;205834;205835;205836 205833 12 SEEMAQMITR Unmodified 1194.5373 0.53729328 1825 P76149 sad Succinate semialdehyde dehydrogenase [NAD(P)+] Sad yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 23.954 23.06 2 0.00054395 9946 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.73 111.82 89436000 20950000 26839000 22130000 0 0 0 4466700 0 4603600 0 0 0 0 0 4910600 0 0 0 0 0 5536300 0 0 0 18195 1825 17630 337967;337968;337969;337970;337971;337972;337973 205837;205838;205839 205839 2 SEFAENDAYVHATPLIR Unmodified 1931.9377 0.93774068 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 6 7 5 3 3 3 3 2 3 3 2 2 2 2 2 3 4 3 5 5 5 33.322 31.786 2;3;4 5.0473E-89 15153 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 442.32 439.68 42826000000 1596700000 1457200000 198830000 3638900000 3921300000 3709400000 1751100000 1696900000 1660900000 721130000 609200000 667090000 958420000 870910000 827040000 174560000 153070000 144580000 1568000000 1496600000 1595500000 4338400000 4485700000 4584600000 18196 133 17631 337974;337975;337976;337977;337978;337979;337980;337981;337982;337983;337984;337985;337986;337987;337988;337989;337990;337991;337992;337993;337994;337995;337996;337997;337998;337999;338000;338001;338002;338003;338004;338005;338006;338007;338008;338009;338010;338011;338012;338013;338014;338015;338016;338017;338018;338019;338020;338021;338022;338023;338024;338025;338026;338027;338028;338029;338030;338031;338032;338033;338034;338035;338036;338037;338038;338039;338040;338041;338042;338043;338044;338045;338046;338047;338048;338049;338050;338051;338052;338053;338054 205840;205841;205842;205843;205844;205845;205846;205847;205848;205849;205850;205851;205852;205853;205854;205855;205856;205857;205858;205859;205860;205861;205862;205863;205864;205865;205866;205867;205868;205869;205870;205871;205872;205873;205874;205875;205876;205877;205878;205879;205880;205881;205882;205883;205884;205885;205886;205887;205888;205889;205890;205891;205892;205893;205894;205895;205896;205897;205898;205899;205900;205901;205902;205903;205904;205905;205906;205907;205908;205909;205910;205911;205912;205913;205914;205915;205916;205917;205918;205919;205920;205921;205922;205923;205924 205858 79 SEFAENDAYVHATPLIRR Unmodified 2088.0389 0.038851707 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 27.413 26.033 3;4 6.1605E-14 8637 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 144.33 134.77 507100000 0 0 0 127540000 114650000 142090000 0 0 0 0 0 0 0 2686900 0 0 0 0 0 0 0 35337000 43358000 41435000 18197 133 17632 338055;338056;338057;338058;338059;338060;338061;338062;338063;338064;338065;338066;338067 205925;205926;205927;205928;205929;205930;205931;205932;205933 205929 7 SEFITVAR Unmodified 921.49198 0.4919813 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.22 23.36 2 5.4006E-12 10149 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 177.71 140.06 218710000 0 0 0 1454100 0 0 0 0 0 8583300 8209500 7862000 86971000 0 0 1637600 1468500 1858600 94347000 0 0 6314000 0 0 18198 643 17633 338068;338069;338070;338071;338072;338073;338074;338075;338076;338077;338078;338079;338080;338081;338082;338083;338084;338085;338086 205934;205935;205936;205937;205938;205939;205940;205941;205942;205943;205944;205945 205939 12 SEFITVARPYAK Unmodified 1380.7402 0.74015049 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 1 2 2 2 2 24.251 23.327 2;3 2.7096E-08 8482 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 204.52 194.74 550000000 3416900 0 5386200 21384000 18745000 20293000 12471000 10985000 5582600 49661000 51743000 55314000 8494700 5397800 7117900 17604000 12340000 12822000 13511000 9079300 13559000 66875000 64398000 63823000 18199 643 17634 338087;338088;338089;338090;338091;338092;338093;338094;338095;338096;338097;338098;338099;338100;338101;338102;338103;338104;338105;338106;338107;338108;338109;338110;338111;338112;338113;338114;338115;338116;338117;338118;338119;338120;338121;338122;338123;338124;338125;338126;338127 205946;205947;205948;205949;205950;205951;205952;205953;205954;205955;205956;205957;205958;205959;205960;205961;205962 205951 16 SEFLIEK Unmodified 864.45928 0.45928418 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.995 23.989 2 0.0072956 8963 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.9 58.407 2419700000 171360000 175930000 155820000 5603900 6389900 5574900 192840000 191150000 196320000 40334000 31426000 28011000 159470000 141120000 134000000 8953600 8148200 7446500 216130000 238050000 222190000 26317000 30206000 26944000 18200 547 17635 338128;338129;338130;338131;338132;338133;338134;338135;338136;338137;338138;338139;338140;338141;338142;338143;338144;338145;338146;338147;338148;338149;338150;338151 205963;205964;205965;205966;205967;205968;205969;205970;205971;205972;205973;205974;205975;205976 205963 14 SEFMTMTSGTGLLYSTFSHYDDVRPGEVGQR Unmodified 3467.5762 0.57620457 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 2 2 2 2 2 1 2 2 2 50.012 48.66 3;4 8.24E-55 23568 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 236.82 234.45 1477500000 141610000 14823000 10942000 3573500 4951300 5672200 120600000 141710000 116410000 0 0 0 128600000 112040000 131600000 3810100 0 0 197190000 173260000 170690000 0 0 0 18201 1388 17636 338152;338153;338154;338155;338156;338157;338158;338159;338160;338161;338162;338163;338164;338165;338166;338167;338168;338169;338170;338171;338172;338173;338174;338175;338176;338177 205977;205978;205979;205980;205981;205982;205983;205984;205985;205986;205987;205988;205989;205990;205991;205992;205993;205994;205995 205987 19 SEGFGITLFER Unmodified 1254.6245 0.62445203 304 P0A729 yceF Maf-like protein YceF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.275 45.885 2 2.7835E-07 22237 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 183.47 174.61 279160000 42278000 38812000 36838000 0 0 0 23785000 21534000 23586000 0 0 0 15436000 13515000 14330000 0 0 0 16255000 18206000 14590000 0 0 0 18202 304 17637 338178;338179;338180;338181;338182;338183;338184;338185;338186;338187;338188;338189 205996;205997;205998;205999;206000;206001 206001 6 SEIDNVK Unmodified 803.4025 0.40249759 11 CON__P04264 no no 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.168 12.696 2 0.087831 2866 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 56.122 41.54 76095000 0 0 0 0 0 0 0 14640000 18583000 9651900 7313000 7563000 4421600 0 3526000 0 0 654400 0 2707400 4461400 1363100 1209100 0 + 18203 11 17638 338190;338191;338192;338193;338194;338195;338196;338197;338198;338199;338200;338201 206002 206002 1 SEIDNVKK Unmodified 931.49746 0.4974606 11 CON__P04264 no no 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 10.928 11.15 2 0.0049663 2213 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 89.046 70.668 95756000 0 0 0 0 0 0 0 0 0 21788000 21635000 28011000 0 0 0 0 0 0 0 0 0 8105200 9004500 7212300 + 18204 11 17639 338202;338203;338204;338205;338206;338207 206003;206004 206003 2 SEIIDGSK Unmodified 847.42871 0.42871234 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 12.509 13.32 2 0.00072492 2899 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 125.81 110.18 184620000 79834000 82968000 0 6911800 6382300 6228700 0 0 0 0 2299900 0 0 0 0 0 0 0 0 0 0 0 0 0 18205 174 17640 338208;338209;338210;338211;338212;338213 206005;206006;206007;206008 206006 4 SEISELR Unmodified 832.42905 0.42904669 6 CON__P02533;CON__Q04695;CON__Q9QWL7 yes no 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 17.96 18.491 2 0.0015237 6972 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.48 41.972 145800000 5018200 3939500 5808500 0 0 0 70763000 60271000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 18206 6 17641 338214;338215;338216;338217;338218 206009 206009 1 SEITDEEYK Unmodified 1112.4873 0.48734943 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.694 15.46 2 0.0001012 5133 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 135.83 135.83 343550000 34640000 31147000 25975000 0 0 0 28983000 34245000 33146000 0 0 0 22880000 19665000 17349000 0 0 0 37651000 29819000 28047000 0 0 0 18207 295 17642 338219;338220;338221;338222;338223;338224;338225;338226;338227;338228;338229;338230 206010;206011;206012;206013 206010 4 SEITDEEYKEFYK Unmodified 1679.7566 0.756648 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.516 26.364 2;3 9.3246E-13 12282 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 244.16 241.39 1830600000 182750000 184030000 186370000 0 0 0 152070000 167240000 152370000 0 0 0 132450000 154360000 127510000 0 0 0 180120000 169610000 41711000 0 0 0 18208 295 17643 338231;338232;338233;338234;338235;338236;338237;338238;338239;338240;338241;338242;338243;338244;338245;338246;338247;338248;338249;338250;338251;338252;338253;338254 206014;206015;206016;206017;206018;206019;206020;206021;206022;206023;206024;206025;206026;206027;206028;206029;206030;206031;206032 206016 18 SEKAEAAAE Unmodified 904.41379 0.41379055 984 P0AG44 rplQ 50S ribosomal protein L17 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.0473 8.5175 2 0.00062597 1997 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 112.41 109.52 171560000 326300 0 0 8473300 6451800 5026500 0 0 0 22967000 17074000 11102000 0 0 0 10924000 24885000 21053000 2898800 3213300 2939700 13186000 12848000 8197200 18209 984 17644 338255;338256;338257;338258;338259;338260;338261;338262;338263;338264;338265;338266;338267;338268;338269;338270 206033;206034;206035;206036;206037;206038;206039 206034 7 SEKHPGPLVVEGK Unmodified 1375.746 0.74596415 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 2 12.128 12.782 2;3 2.2239E-05 2956 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 88.075 83.189 314390000 29453000 27965000 30766000 3799400 5377100 0 19550000 23783000 23423000 2933500 1749600 2406300 16670000 13390000 15268000 1640800 1438000 1156900 22247000 28294000 23841000 6594500 6403400 6238800 18210 1143 17645 338271;338272;338273;338274;338275;338276;338277;338278;338279;338280;338281;338282;338283;338284;338285;338286;338287;338288;338289;338290;338291;338292;338293;338294;338295;338296;338297;338298;338299;338300;338301;338302;338303;338304;338305;338306;338307 206040;206041;206042;206043;206044 206040 4 SEKPAIVGEPEMPSTIADVAQEK Unmodified 2425.2047 0.20465599 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.811 35.041 3 7.2883E-05 16920 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.09 75.468 480440000 58188000 50190000 49384000 945140 1161700 1152500 19937000 21279000 21351000 1890400 0 0 28026000 38847000 34243000 0 0 0 53255000 49655000 48307000 1245400 1378900 0 18211 177 17646 338308;338309;338310;338311;338312;338313;338314;338315;338316;338317;338318;338319;338320;338321;338322;338323;338324;338325 206045;206046;206047;206048;206049;206050;206051;206052;206053;206054;206055 206049 11 SEKPMLSPQAELELLETDER Unmodified 2314.1362 0.13624207 430 P0A8H6 yihI Der GTPase-activating protein YihI yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 44.174 42.654 3 9.0684E-07 20938 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.831 86.168 70529000 27618000 14627000 0 0 0 0 4405100 7689700 0 0 0 0 3123300 2998700 2766300 0 0 0 7301700 0 0 0 0 0 18212 430 17647 338326;338327;338328;338329;338330;338331;338332;338333 206056 206056 1 SELAANYPFIDPDKK Unmodified 1706.8516 0.85155143 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 2 2 2 1 2 2 2 33.657 32.199 2;3 4.6292E-21 15221 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 224.42 217.29 357480000 22954000 25480000 18034000 321540 0 0 31398000 23638000 32657000 0 0 0 29768000 26900000 19963000 0 0 0 45527000 34401000 46439000 0 0 0 18213 1306 17648 338334;338335;338336;338337;338338;338339;338340;338341;338342;338343;338344;338345;338346;338347;338348;338349;338350;338351;338352;338353;338354 206057;206058;206059;206060;206061;206062;206063;206064;206065;206066;206067;206068;206069;206070 206064 14 SELDTAFNR Unmodified 1051.4934 0.49343786 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.58 22.842 2 1.3106E-05 7110 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 162.5 122.4 351120000 30180000 31962000 34417000 1811500 1661700 2017900 0 9643900 12050000 6628700 5331400 5130000 9516500 8931200 8567400 60468000 45072000 48573000 7074000 7335200 10305000 2346200 0 2095300 18214 515 17649 338355;338356;338357;338358;338359;338360;338361;338362;338363;338364;338365;338366;338367;338368;338369;338370;338371;338372;338373;338374;338375;338376 206071;206072;206073;206074;206075;206076;206077;206078;206079;206080;206081;206082;206083;206084;206085;206086 206073 16 SELEAFEVALENVRPTVEVK Unmodified 2258.1794 0.17942751 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 3 3 3 2 2 2 3 3 3 3 2 3 3 3 3 2 1 51.966 50.869 2;3;4 2.4355E-81 24783 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 403.14 391.16 12903000000 1908400000 1797000000 1746600000 18293000 0 1376500 528110000 545290000 558200000 69691000 65713000 58502000 655010000 641060000 735430000 55750000 53817000 54844000 1159500000 1116100000 1084100000 45013000 4605000 0 18215 67 17650 338377;338378;338379;338380;338381;338382;338383;338384;338385;338386;338387;338388;338389;338390;338391;338392;338393;338394;338395;338396;338397;338398;338399;338400;338401;338402;338403;338404;338405;338406;338407;338408;338409;338410;338411;338412;338413;338414;338415;338416;338417;338418;338419;338420;338421;338422;338423;338424;338425;338426;338427;338428;338429;338430;338431 206087;206088;206089;206090;206091;206092;206093;206094;206095;206096;206097;206098;206099;206100;206101;206102;206103;206104;206105;206106;206107;206108;206109;206110;206111;206112;206113;206114;206115;206116;206117;206118;206119;206120;206121 206099 34 SELLDSR Unmodified 818.4134 0.41339662 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.235 15.959 2 0.00061652 4525 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 149.4 84.136 5684600000 0 1034200000 810310000 3212100 3478300 3698000 0 3124100000 0 23778000 16323000 19082000 113370000 91928000 103150000 0 0 0 117490000 112660000 107760000 0 0 0 18216 1755;1756 17651 338432;338433;338434;338435;338436;338437;338438;338439;338440;338441;338442;338443;338444;338445;338446 206122;206123;206124;206125;206126;206127 206122 6 SELNAYASQIEPALLIADR Unmodified 2073.0742 0.074234161 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.287 51.039 3 9.7593E-07 24723 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.371 89.709 66675000 4903800 3814800 3531100 0 0 0 3509300 3029400 4081300 0 0 0 4686100 4146700 4275100 0 0 0 10474000 9870900 10353000 0 0 0 18217 1055 17652 338447;338448;338449;338450;338451;338452;338453;338454;338455;338456;338457;338458 206128 206128 1 SELSQLSPQPLWDIFAK Unmodified 1958.0149 0.014928368 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.086 53.613 2 3.0971E-24 26541 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 263.74 246.07 3369500000 311000000 348860000 356730000 0 0 0 333870000 287070000 298790000 0 0 0 222390000 207250000 214800000 0 0 0 278680000 255460000 254650000 0 0 0 18218 1109 17653 338459;338460;338461;338462;338463;338464;338465;338466;338467;338468;338469;338470 206129;206130;206131;206132 206130 4 SELSQSEQQR Unmodified 1190.5527 0.55274365 957 P0AFM9 pspB Phage shock protein B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.069 11.727 2 0.002175 2914 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 80.438 77.182 58386000 7379200 5029800 0 0 0 0 5306600 7221700 7247900 3131800 0 0 0 0 2999700 9384000 0 0 3766400 4565300 2353400 0 0 0 18219 957 17654 338471;338472;338473;338474;338475;338476;338477;338478;338479;338480;338481 206133;206134 206133 2 SELVNVAK Unmodified 858.48108 0.48108226 396 P0A850 tig Trigger factor yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.019 16.556 2 0.002784 5803 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.602 70.64 6413400000 396470000 412390000 410900000 0 21092000 19355000 574710000 622880000 568210000 30051000 46321000 55130000 665770000 0 0 11506000 0 0 866570000 839890000 776340000 33812000 32026000 30013000 18220 396 17655 338482;338483;338484;338485;338486;338487;338488;338489;338490;338491;338492;338493;338494;338495;338496;338497;338498;338499;338500 206135;206136;206137;206138;206139;206140 206135 6 SELVNVAKK Unmodified 986.57605 0.57604528 396 P0A850 tig Trigger factor yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 12.505 12.867 2 0.0015558 2978 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 89.55 68.022 26193000 0 0 0 0 2614900 3123400 0 0 0 5641800 3610100 5268000 0 0 0 3172300 1278200 1484500 0 0 0 0 0 0 18221 396 17656 338501;338502;338503;338504;338505;338506;338507;338508 206141 206141 1 SELVSNELTK Unmodified 1118.5819 0.58191851 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.718 20.89 2 0.00012699 6095 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 128 109.46 1798700000 82320000 82418000 73145000 8651000 8460900 7857900 96481000 99810000 106670000 98020000 84850000 77476000 87941000 86187000 73721000 64710000 45321000 45818000 133660000 131720000 123660000 67229000 56393000 56179000 18222 1057 17657 338509;338510;338511;338512;338513;338514;338515;338516;338517;338518;338519;338520;338521;338522;338523;338524;338525;338526;338527;338528;338529;338530;338531;338532 206142;206143;206144;206145;206146;206147;206148;206149;206150;206151;206152;206153;206154 206144 13 SEMCLVMEQMGLVVEAHHHEVATAGQNEVATR Unmodified 3562.6425 0.64252677 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 3 3 3 3 1 3 3 4 3 3 3 1 42.753 41.041 3;4;5 4.9825E-55 20419 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 226.57 221.46 3272500000 382250000 326010000 369290000 0 0 0 286730000 261940000 188610000 3104800 0 0 205190000 176490000 252270000 0 0 0 296830000 255670000 264430000 3700000 0 0 18223 508 17658 338533;338534;338535;338536;338537;338538;338539;338540;338541;338542;338543;338544;338545;338546;338547;338548;338549;338550;338551;338552;338553;338554;338555;338556;338557;338558;338559;338560;338561;338562;338563;338564;338565;338566;338567;338568;338569;338570;338571;338572 206155;206156;206157;206158;206159;206160;206161;206162;206163;206164;206165;206166;206167;206168;206169;206170;206171;206172;206173;206174;206175;206176;206177;206178;206179;206180;206181;206182;206183 206158 29 SEMGDLAQSVSHMQR Unmodified 1674.7454 0.74538858 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 29.98 28.649 2;3 3.6962E-15 9753 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 198.81 191.92 364620000 82316000 70702000 55732000 52015000 48196000 52357000 0 0 0 0 0 0 3298500 0 0 0 0 0 0 0 0 0 0 0 18224 151 17659 338573;338574;338575;338576;338577;338578;338579;338580;338581;338582;338583;338584;338585 206184;206185;206186;206187;206188;206189;206190;206191;206192;206193;206194 206185 11 SEMPDGAASLR Unmodified 1132.5183 0.5182724 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 19.825 20.424 2 0.00035447 7845 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 89.047 84.691 300640000 106120000 101540000 92978000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18225 1835 17660 338586;338587;338588 206195;206196;206197 206196 3 SEMVELNR Unmodified 976.46478 0.46478027 21 CON__Q7RTS7 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 13.946 14.985 2 0.09933 4562 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 49.358 15.562 55712000 0 0 0 0 4689300 4355300 0 0 0 0 0 0 11738000 11507000 8526400 0 0 0 14897000 0 0 0 0 0 + 18226 21 17661 338589;338590;338591;338592;338593;338594 206198;206199 206199 2 SENADYQYNK Unmodified 1230.5153 0.51529551 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 12.342 12.487 2 4.5348E-05 2782 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 138.1 138.1 201510000 0 0 0 0 0 0 0 0 0 23463000 23385000 23280000 0 0 0 36768000 32628000 34033000 0 0 0 7905100 10308000 9742300 18227 1338 17662 338595;338596;338597;338598;338599;338600;338601;338602;338603 206200;206201;206202;206203;206204;206205;206206;206207 206200 3 SENIQHTLYK Unmodified 1231.6197 0.619701 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 2 3 2 2 2 2 2 2 1 1 2 2 2 1 1 1 13.767 14.302 2;3 7.0409E-06 3812 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 132.88 96.318 224930000 0 0 0 0 0 0 5452400 7498600 9135400 11082000 18071000 19062000 23384000 35431000 18988000 4987500 4466100 6919900 20540000 19108000 11844000 4371200 2422500 2168800 18228 600 17663 338604;338605;338606;338607;338608;338609;338610;338611;338612;338613;338614;338615;338616;338617;338618;338619;338620;338621;338622;338623;338624;338625;338626;338627;338628;338629;338630;338631;338632;338633;338634 206208;206209;206210;206211;206212 206209 5 SENLYSAAR Unmodified 1009.4829 0.48287317 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.806 15.459 2 1.4289E-05 5082 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 160.88 156.94 1056200000 79954000 87413000 71487000 0 0 0 88675000 94711000 88269000 2224200 1956500 0 83043000 97913000 80342000 0 0 0 93362000 87335000 99517000 0 0 0 18229 1227 17664 338635;338636;338637;338638;338639;338640;338641;338642;338643;338644;338645;338646;338647;338648 206213;206214;206215;206216;206217;206218;206219;206220;206221 206216 9 SEPIKGDVLNYDEVMER Unmodified 1992.9463 0.94625646 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 33.882 32.379 2;3 2.2748E-31 15573 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 293.35 291.37 26180000000 1211200000 1122000000 1020900000 12478000 8577600 13703000 3228000000 3157700000 2972100000 33109000 36388000 16927000 2718300000 2740000000 2516700000 25294000 18076000 22078000 1747500000 1804600000 1737400000 8312600 0 8800100 18230 212 17665 338649;338650;338651;338652;338653;338654;338655;338656;338657;338658;338659;338660;338661;338662;338663;338664;338665;338666;338667;338668;338669;338670;338671;338672;338673;338674;338675;338676;338677;338678;338679;338680;338681;338682;338683;338684;338685 206222;206223;206224;206225;206226;206227;206228;206229;206230;206231;206232;206233;206234;206235;206236;206237;206238;206239;206240;206241;206242;206243;206244;206245;206246;206247;206248;206249;206250;206251;206252;206253;206254;206255;206256 206235 35 SEPLLIAR Unmodified 897.52837 0.5283668 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.365 25.081 2 0.0086264 11065 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 81.381 69.224 199790000 34767000 29758000 28464000 6851000 6444700 6222000 13461000 16843000 12338000 882110 1244600 1090500 6296500 7200300 6387200 0 0 0 6989900 7922000 5996000 627840 0 0 18231 1528 17666 338686;338687;338688;338689;338690;338691;338692;338693;338694;338695;338696;338697;338698;338699;338700;338701;338702;338703;338704 206257;206258 206258 2 SEPMLNDTESYFNTAIK Unmodified 1958.8932 0.89315825 83 P03841 malM Maltose operon periplasmic protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.737 42.07 2 1.2263E-18 20847 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 183 183 1154300000 64227000 61142000 62508000 0 0 0 76024000 75582000 84196000 9003000 9030700 8735500 94293000 78444000 81301000 4918000 0 0 144350000 139660000 148300000 4042300 3952800 4601400 18232 83 17667 338705;338706;338707;338708;338709;338710;338711;338712;338713;338714;338715;338716;338717;338718;338719;338720;338721;338722;338723 206259;206260;206261;206262;206263;206264;206265;206266;206267 206260 9 SEQGMSLLQPGK Unmodified 1273.6336 0.63363651 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 2 1 2 2 26.86 25.678 2 3.3294E-05 11222 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 112.71 102.48 657430000 52342000 49529000 48169000 0 0 0 36561000 41081000 41899000 4046800 5168300 0 63708000 63289000 54115000 0 0 0 63364000 70985000 63171000 0 0 0 18233 1880 17668 338724;338725;338726;338727;338728;338729;338730;338731;338732;338733;338734;338735;338736;338737;338738;338739;338740;338741;338742 206268;206269;206270;206271;206272;206273;206274;206275;206276;206277;206278;206279;206280 206279 13 SEQGYIPVSGHLQR Unmodified 1569.79 0.78995423 492 P0A962 ansA L-asparaginase 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 1 1 1 1 1 1 1 1 1 1 20.873 21.203 2;3 0.00016846 8418 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.987 79.729 475900000 34335000 32521000 0 0 0 0 43511000 49835000 43256000 0 0 0 44561000 38664000 45064000 0 0 0 47614000 47672000 48867000 0 0 0 18234 492 17669 338743;338744;338745;338746;338747;338748;338749;338750;338751;338752;338753;338754 206281;206282;206283;206284 206283 4 SEQHAQGADAVVDLNNELK Unmodified 2036.9763 0.97631103 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 1 1 2 2 2 1 27.749 26.646 2;3 2.946E-110 12104 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 376.67 370.64 3806600000 338350000 252400000 246560000 2240500 1516000 1629300 297960000 281260000 250570000 0 0 0 306720000 268990000 269360000 0 670960 1264500 423680000 458960000 403310000 0 1160400 0 18235 448 17670 338755;338756;338757;338758;338759;338760;338761;338762;338763;338764;338765;338766;338767;338768;338769;338770;338771;338772;338773;338774;338775;338776;338777;338778;338779;338780;338781;338782;338783;338784 206285;206286;206287;206288;206289;206290;206291;206292;206293;206294;206295;206296;206297;206298;206299;206300;206301;206302;206303;206304;206305;206306;206307;206308 206296 24 SEQHAQGADAVVDLNNELK Acetyl (Protein N-term) 2078.9869 0.98687572 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 1 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.415 33.867 2 4.3729E-46 16240 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 268.18 256.93 128980000 16549000 16461000 13978000 0 0 0 10720000 10916000 9790100 0 0 0 8315700 8288500 7775100 0 0 0 9636100 8603000 7946200 0 0 0 18236 448 17670 338785;338786;338787;338788;338789;338790;338791;338792;338793;338794;338795;338796 206309;206310;206311;206312;206313 206311 5 SEQLEQQLQVLLLPK Unmodified 1764.9986 0.99855002 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.199 51.759 2 0.15818 24411 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 38.27 34.846 88047000 8465800 11609000 9080500 0 0 0 5437800 7324700 5717100 0 0 0 7652100 7867600 6328400 0 0 0 5917900 5773000 6873100 0 0 0 18237 345 17671 338797;338798;338799;338800;338801;338802;338803;338804;338805;338806;338807;338808 206314 206314 0 SEQLPTR Unmodified 829.42938 0.42938104 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.112 12.936 2 0.0025395 3712 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.73 87.755 935530000 79608000 0 82744000 0 0 0 99277000 89617000 90549000 0 0 0 63541000 0 61999000 0 0 0 125750000 121590000 120860000 0 0 0 18238 292 17672 338809;338810;338811;338812;338813;338814;338815;338816;338817;338818 206315;206316;206317;206318;206319;206320;206321;206322;206323 206320 7 SEQLTDQVLVER Unmodified 1415.7256 0.72562264 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 1 1 1 1 29.334 28.422 2;3 7.0854E-17 9743 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 211.86 205.2 1057900000 0 0 11603000 5285900 4544500 2695200 0 0 0 963770 0 0 0 0 0 411850000 258200000 286890000 25165000 25046000 25648000 0 0 0 18239 1005 17673 338819;338820;338821;338822;338823;338824;338825;338826;338827;338828;338829;338830;338831;338832;338833;338834 206324;206325;206326;206327;206328;206329;206330;206331;206332;206333;206334;206335 206324 12 SEQLVTPENVTTK Acetyl (Protein N-term) 1486.7515 0.75150304 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 1 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.951 33.146 2 0.011556 12719 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 55.258 47.858 26746000 5022600 0 0 0 0 933140 0 0 2539200 3953100 0 2351200 0 0 1992500 0 0 0 0 0 5795100 2336500 1822300 0 18240 1451 17674 338835;338836;338837;338838;338839;338840;338841;338842;338843 206336 206336 1 SEQLVTPENVTTK Unmodified 1444.7409 0.74093835 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.565 22.019 2 1.5712E-05 9424 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 111.52 98.147 103730000 8012100 10008000 5848900 0 0 0 5178800 5043600 4885300 0 0 0 7157500 4067300 5400500 0 0 0 16490000 16754000 14887000 0 0 0 18241 1451 17674 338844;338845;338846;338847;338848;338849;338850;338851;338852;338853;338854;338855;338856 206337;206338;206339;206340 206338 4 SEQNNTEMTFQIQR Unmodified 1724.7788 0.7787972 996 P0AG86 secB Protein-export protein SecB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 28.42 27.291 2;3 3.476E-68 12490 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 325.76 319.52 840570000 7492400 3397200 5379500 0 0 0 16442000 17493000 15033000 0 0 1907300 45241000 53949000 56257000 155960000 97117000 93266000 81472000 75091000 72964000 14874000 13035000 14199000 18242 996 17675 338857;338858;338859;338860;338861;338862;338863;338864;338865;338866;338867;338868;338869;338870;338871;338872;338873;338874;338875;338876;338877;338878;338879;338880;338881;338882;338883;338884;338885;338886;338887;338888;338889;338890 206341;206342;206343;206344;206345;206346;206347;206348;206349;206350;206351;206352;206353;206354;206355;206356;206357 206353 16 SEQNNTEMTFQIQR Acetyl (Protein N-term) 1766.7894 0.78936188 996 P0AG86 secB Protein-export protein SecB yes yes 1 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 2 1 2 3 2 3 2 3 3 7 6 6 1 1 1 2 1 2 39.592 38.361 2;3 1.7034E-56 14496 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 310.77 304.74 1237200000 51870000 46478000 42484000 12871000 10488000 11210000 59740000 54802000 58528000 18170000 15559000 17250000 62269000 55977000 50733000 175910000 139550000 174570000 47136000 45643000 45794000 16098000 11047000 13063000 18243 996 17675 338891;338892;338893;338894;338895;338896;338897;338898;338899;338900;338901;338902;338903;338904;338905;338906;338907;338908;338909;338910;338911;338912;338913;338914;338915;338916;338917;338918;338919;338920;338921;338922;338923;338924;338925;338926;338927;338928;338929;338930;338931;338932;338933;338934;338935;338936;338937;338938;338939;338940;338941;338942;338943;338944;338945;338946;338947 206358;206359;206360;206361;206362;206363;206364;206365;206366;206367;206368;206369;206370;206371;206372;206373;206374;206375;206376;206377;206378;206379;206380;206381;206382;206383;206384;206385;206386;206387;206388;206389;206390;206391;206392;206393;206394;206395;206396;206397;206398;206399;206400;206401;206402;206403;206404;206405;206406 206359 36 SERFPNDVDPIETR Unmodified 1673.8009 0.80091285 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 3 3 3 25.827 24.683 2;3;4 5.0271E-14 8174 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 181.66 167.85 11958000000 33154000 33077000 30266000 1905500000 2001800000 1860100000 35093000 29374000 36802000 158020000 154590000 159350000 15994000 19160000 17697000 56282000 43833000 41412000 40537000 47357000 45697000 1754700000 1763400000 1674500000 18244 939 17676 338948;338949;338950;338951;338952;338953;338954;338955;338956;338957;338958;338959;338960;338961;338962;338963;338964;338965;338966;338967;338968;338969;338970;338971;338972;338973;338974;338975;338976;338977;338978;338979;338980;338981;338982;338983;338984;338985;338986;338987;338988;338989;338990;338991;338992;338993;338994;338995;338996;338997;338998;338999 206407;206408;206409;206410;206411;206412;206413;206414;206415;206416;206417;206418;206419;206420;206421;206422;206423;206424;206425;206426;206427;206428;206429;206430;206431;206432;206433;206434;206435;206436;206437;206438;206439;206440;206441;206442;206443;206444;206445;206446;206447;206448;206449;206450;206451;206452;206453;206454;206455;206456;206457;206458;206459;206460;206461;206462;206463;206464;206465;206466;206467;206468;206469;206470;206471;206472;206473;206474;206475;206476;206477;206478;206479;206480;206481 206458 73 SERFPNDVDPIETR Acetyl (Protein N-term) 1715.8115 0.81147753 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 1 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 34.969 33.186 2;3 1.0532E-07 12652 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 136.38 128.81 73231000 0 0 0 17364000 18117000 15646000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7470400 8479800 6154200 18245 939 17676 339000;339001;339002;339003;339004;339005;339006;339007;339008;339009 206482;206483;206484;206485;206486;206487;206488;206489;206490;206491;206492 206483 11 SERIEIPVLPLR Unmodified 1420.8402 0.84019889 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 38.67 38.793 3 0.00022542 13490 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 84.605 84.605 16755000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5932500 3660600 7162400 0 0 0 0 0 0 18246 536 17677 339010;339011;339012 206493;206494;206495 206495 3 SESAIPAEQFK Unmodified 1205.5928 0.59281755 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.57 22.004 2 1.9865E-07 9417 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.09 146.82 10030000000 1240400000 1152600000 1131900000 17402000 0 0 632830000 546420000 539510000 0 0 0 671940000 637960000 707310000 0 0 0 881100000 895850000 975060000 0 0 0 18247 990 17678 339013;339014;339015;339016;339017;339018;339019;339020;339021;339022;339023;339024;339025 206496;206497;206498;206499;206500;206501;206502;206503;206504;206505;206506;206507;206508;206509 206499 14 SESLDDFFTR Unmodified 1215.5408 0.54078198 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.043 40.095 2 0.00085831 19892 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.136 88.136 685460000 0 0 0 283140 0 0 76483000 72871000 89255000 1734600 2138700 1554100 88537000 83572000 83099000 0 0 0 64046000 62065000 57497000 0 1219800 1107000 18248 1467 17679 339026;339027;339028;339029;339030;339031;339032;339033;339034;339035;339036;339037;339038;339039;339040 206510;206511;206512 206511 1 SETASWQPSASIPNLLK Unmodified 1827.9367 0.93667805 450 P0A8N7 epmA Elongation factor P--(R)-beta-lysine ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.661 45.252 2 9.5715E-05 22556 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.92 70.707 82025000 7258500 5050900 5189100 0 0 0 7789000 5275300 6968200 0 0 0 4618400 5838900 6677600 0 0 0 7348100 11867000 8143300 0 0 0 18249 450 17680 339041;339042;339043;339044;339045;339046;339047;339048;339049;339050;339051;339052 206513 206513 1 SETIATLLAEDETLDENELGEILHAIEK Unmodified 3095.5398 0.53978551 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 55.806 54.36 4 1.7402E-07 25879 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.73 92.646 237890000 0 0 13789000 0 0 0 0 0 9134800 0 0 0 28977000 38861000 26138000 0 0 0 25484000 44650000 50858000 0 0 0 18250 107 17681 339053;339054;339055;339056;339057;339058;339059;339060 206514 206514 1 SETITVNCPTCGK Unmodified 1465.6541 0.65411395 431 P0A8H8 yacG DNA gyrase inhibitor YacG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.483 18.165 2 2.6107E-12 6630 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 187.97 171.34 449740000 41869000 44802000 44202000 0 0 0 34356000 40755000 45174000 0 0 0 27427000 29140000 29308000 0 0 0 38275000 39980000 34459000 0 0 0 18251 431 17682 339061;339062;339063;339064;339065;339066;339067;339068;339069;339070;339071;339072 206515;206516;206517;206518;206519;206520;206521;206522;206523;206524;206525;206526 206520 12 SETKNELEDLLEK Unmodified 1546.7726 0.77263241 973 P0AFZ1 sseB Protein SseB yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.916 31.43 2 2.062E-13 14966 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 219.42 202.75 123880000 0 6873800 8433400 0 0 0 11839000 12941000 7916700 0 0 0 10177000 10284000 8113500 0 0 0 20614000 12623000 13363000 0 0 699680 18252 973 17683 339073;339074;339075;339076;339077;339078;339079;339080;339081;339082;339083;339084 206527;206528;206529;206530;206531 206527 5 SETLAMIIDGR Unmodified 1204.6122 0.61217279 307 P0A738 moaC Cyclic pyranopterin monophosphate synthase accessory protein yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 40.567 39.131 2 0.054451 18304 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 63.076 41.628 85379000 22051000 18890000 21300000 0 0 0 0 0 0 0 0 0 7629500 7837100 7671000 0 0 0 0 0 0 0 0 0 18253 307 17684 339085;339086;339087;339088;339089;339090 206532;206533 206533 0 SETLLPLVGDK Unmodified 1170.6496 0.64960415 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.707 37.978 2 5.0073E-05 17542 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 129.38 107.79 1619900000 152460000 156330000 124240000 0 2883900 0 137020000 125710000 124060000 3629600 3273700 3771700 102030000 100820000 97217000 0 0 1475100 161120000 154090000 169720000 0 0 0 18254 1503 17685 339091;339092;339093;339094;339095;339096;339097;339098;339099;339100;339101;339102;339103;339104;339105;339106;339107 206534;206535;206536;206537;206538;206539;206540;206541;206542;206543;206544;206545;206546;206547 206547 14 SETVDCLIWAIGR Unmodified 1518.7501 0.75006325 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 51.708 50.477 2;3 4.9661E-09 24435 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.97 118.93 1082000000 77427000 91659000 87676000 0 0 0 130100000 102590000 98045000 0 0 0 92539000 83630000 77685000 0 0 0 81744000 77707000 81189000 0 0 0 18255 128 17686 339108;339109;339110;339111;339112;339113;339114;339115;339116;339117;339118;339119;339120;339121;339122;339123;339124;339125;339126;339127;339128;339129 206548;206549;206550;206551;206552;206553;206554;206555;206556;206557;206558;206559 206552 4 SETVDFFGDK Unmodified 1143.5084 0.50841922 1165 P20099 bisC Biotin sulfoxide reductase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.32 31.88 2 0.027498 15018 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 58.246 56.751 82179000 8347100 9639400 8410600 0 0 0 7055600 6963300 6002800 0 0 0 4949900 5093000 5830500 0 0 0 5902600 6047800 7936500 0 0 0 18256 1165 17687 339130;339131;339132;339133;339134;339135;339136;339137;339138;339139;339140;339141 206560 206560 1 SEVAVPGIDASTFDGIIQK Unmodified 1945.9997 0.99967223 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 1 1 2 2 2 50.547 49.1 2;3 2.1366E-22 24034 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 184.98 183.91 7494600000 1389600000 1412300000 1286200000 0 2962400 0 730430000 774890000 787640000 1464600 0 1035100 130690000 126250000 122590000 0 0 0 237860000 255860000 234860000 0 0 0 18257 1038 17688 339142;339143;339144;339145;339146;339147;339148;339149;339150;339151;339152;339153;339154;339155;339156;339157;339158;339159;339160;339161;339162;339163;339164;339165 206561;206562;206563;206564;206565;206566;206567;206568;206569;206570;206571;206572;206573;206574;206575;206576;206577;206578;206579;206580;206581 206575 21 SEVLTHIGNEMLAK Unmodified 1540.7919 0.79192806 1750 P69828 gatA Galactitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 1 1 1 29.196 27.914 2;3 1.1389E-19 12811 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 247.13 225.14 9043100000 807380000 726570000 839670000 13753000 13555000 13382000 962050000 1014200000 1034800000 22513000 22041000 17568000 595520000 615500000 611500000 6666700 4911400 5288300 591950000 543010000 558180000 6902700 8528900 7639300 18258 1750 17689 339166;339167;339168;339169;339170;339171;339172;339173;339174;339175;339176;339177;339178;339179;339180;339181;339182;339183;339184;339185;339186;339187;339188;339189;339190;339191;339192;339193;339194;339195;339196;339197;339198;339199;339200;339201;339202;339203;339204;339205 206582;206583;206584;206585;206586;206587;206588;206589;206590;206591;206592;206593;206594;206595;206596;206597;206598;206599;206600;206601;206602;206603;206604;206605;206606;206607;206608 206599 27 SEVNLGAGEAGSVTIPR Unmodified 1655.8479 0.84786304 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.163 31.388 2 7.4727E-11 15311 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.99 145.46 70571000 0 0 0 917820 942410 894820 11741000 9937100 9330200 3240600 3800700 3857500 0 4427200 2577500 0 0 0 5681800 3843000 5391900 1245000 1361600 1380900 18259 189 17690 339206;339207;339208;339209;339210;339211;339212;339213;339214;339215;339216;339217;339218;339219;339220;339221;339222 206609;206610;206611 206611 3 SEVQGVMLYLR Unmodified 1293.6751 0.67510739 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 41.667 39.954 2 0.14482 19616 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.066 39.111 30588000 9769600 5891500 7776800 0 0 0 1886000 0 2864100 0 0 0 0 2399900 0 0 0 0 0 0 0 0 0 0 18260 1878 17691 339223;339224;339225;339226;339227;339228 206612;206613 206612 0 SEVRLPNGVLR Unmodified 1238.7095 0.70951906 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.328 23.168 3 6.7385E-05 7304 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 112.13 103.23 25259000 0 0 0 3503100 4015000 4584600 0 0 0 1520000 1319700 1652300 0 0 0 0 0 0 0 0 0 3309300 2457900 2896900 18261 364 17692 339229;339230;339231;339232;339233;339234;339235;339236;339237 206614;206615;206616 206616 3 SEVTELR Unmodified 832.42905 0.42904669 12 CON__P08779 yes yes 0 0 0 By MS/MS 1 17.821 18.324 2 0.086367 6886 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 64.776 0 52261000 0 0 0 0 0 0 0 0 52261000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 18262 12 17693 339238 206617 206617 0 SEWAGTVYPCVPGHEIVGR Unmodified 2113.0051 0.005108738 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 35.976 34.571 2;3 1.0176E-36 16654 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 233.59 230.62 2549400000 908160000 916170000 722940000 1120300 0 987530 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18263 1762 17694 339239;339240;339241;339242;339243;339244;339245;339246 206618;206619;206620;206621;206622;206623 206619 6 SEWANLVK Unmodified 945.49198 0.4919813 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.998 27.742 2 0.0097121 12661 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.597 70.775 158090000 20133000 19550000 23397000 0 0 0 11241000 12581000 9141100 0 0 0 8769600 8384500 8694000 0 0 0 10939000 13223000 12036000 0 0 0 18264 1006 17695 339247;339248;339249;339250;339251;339252;339253;339254;339255;339256;339257;339258 206624;206625;206626;206627;206628;206629;206630;206631;206632;206633;206634 206631 11 SEWPAVFDR Unmodified 1105.5193 0.51925868 196 P09029 purK N5-carboxyaminoimidazole ribonucleotide synthase yes yes 0 0 0 By MS/MS 1 38.711 37.304 2 0.00070166 18066 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.51 88.307 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18265 196 17696 339259 206635 206635 1 SEYLGDPDFVK Unmodified 1268.5925 0.5924832 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 33.209 31.565 2 0.0099882 15285 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 63.426 61.003 125360000 0 0 0 0 0 0 22470000 21821000 25501000 0 0 0 0 0 0 0 0 0 18890000 19449000 17232000 0 0 0 18266 1155 17697 339260;339261;339262;339263;339264;339265 206636;206637;206638;206639;206640 206637 2 SEYNVEAVYESVNVATAR Unmodified 1999.9487 0.9486993 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 43.278 41.855 2 1.2391E-23 20246 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 251.84 246.21 57217000 4564100 3847500 3894400 0 0 0 0 0 1778000 0 0 0 5153500 4171800 6228300 0 0 0 9520200 8960900 9098500 0 0 0 18267 346 17698 339266;339267;339268;339269;339270;339271;339272;339273;339274;339275 206641;206642;206643;206644;206645 206643 5 SFADEGLLNK Unmodified 1092.5451 0.54513908 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 29.199 27.971 2 0.03262 12829 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 56.378 43.001 69192000 11226000 9203600 10066000 0 0 0 0 6381800 5833100 0 0 0 3085600 3828700 0 0 0 0 6877200 7230600 5458100 0 0 0 18268 874 17699 339276;339277;339278;339279;339280;339281;339282;339283;339284;339285 206646 206646 1 SFAGQPYHGEWPAGTCIR Unmodified 2032.9214 0.92137911 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 30.44 29.075 2;3 4.3628E-17 13472 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 211.13 205.67 1115000000 164680000 143690000 118530000 0 0 0 79911000 82328000 85456000 0 0 0 71810000 56442000 74223000 0 0 0 83730000 76002000 78161000 0 0 0 18269 1076 17700 339286;339287;339288;339289;339290;339291;339292;339293;339294;339295;339296;339297;339298;339299;339300;339301;339302;339303;339304;339305;339306;339307;339308 206647;206648;206649;206650;206651;206652;206653;206654;206655;206656;206657;206658;206659;206660 206656 14 SFDEDVDYYVPVAEIEK Unmodified 2016.9204 0.92041886 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 50.09 48.662 2 8.7464E-14 23580 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 162.13 160.2 146960000 0 0 0 0 0 0 5455000 5139200 6344400 0 0 0 13082000 13329000 15537000 0 0 0 32633000 27205000 28236000 0 0 0 18270 660 17701 339309;339310;339311;339312;339313;339314;339315;339316;339317 206661;206662;206663;206664;206665;206666 206663 6 SFDFILNTVAAPHNLDDFTTLLK Unmodified 2591.3272 0.32715438 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 55.203 53.79 2;3 4.9897E-22 26591 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 229.68 221.13 2333500000 796630000 796930000 733810000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6122900 0 0 0 18271 1762 17702 339318;339319;339320;339321;339322;339323;339324 206667;206668;206669;206670;206671 206669 5 SFDIYSR Unmodified 886.41848 0.418482 243 P0A6G7 clpP ATP-dependent Clp protease proteolytic subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 25.131 24.136 1;2 0.00070893 10804 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 146.94 135.3 3877600000 230370000 277840000 233530000 0 0 0 450240000 418150000 431830000 0 0 0 354120000 294560000 259960000 0 0 0 284610000 328220000 314200000 0 0 0 18272 243 17703 339325;339326;339327;339328;339329;339330;339331;339332;339333;339334;339335;339336;339337;339338;339339;339340;339341;339342;339343;339344;339345;339346;339347 206672;206673;206674;206675;206676;206677;206678;206679;206680;206681;206682;206683;206684 206675 12 SFDPMISETLVEVMNAEGPQLHTNAIPK Unmodified 3067.4995 0.4994578 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 54.478 53.016 3 1.7183E-07 26307 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.255 92.716 250040000 56796000 57888000 53380000 0 0 0 25245000 0 21562000 0 0 0 0 0 0 0 0 0 0 0 35165000 0 0 0 18273 128 17704 339348;339349;339350;339351;339352;339353 206685 206685 1 SFDSVAQAWDAAMADAK Unmodified 1782.7883 0.78829925 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.952 50.704 2 2.9613E-20 24773 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 202.61 194.21 270560000 28902000 34367000 28360000 0 0 0 12659000 11569000 14449000 0 0 0 17971000 20037000 15603000 0 0 0 29829000 27493000 29322000 0 0 0 18274 177 17705 339354;339355;339356;339357;339358;339359;339360;339361;339362;339363;339364;339365 206686;206687;206688;206689;206690;206691;206692;206693;206694 206690 9 SFEDIKEFGEEIAR Unmodified 1668.7995 0.79951586 419 P0A8D0 nrdR Transcriptional repressor NrdR yes yes 0 0 1 By MS/MS 1 41.461 39.31 3 1.1526E-05 19513 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 93.494 88.779 31754000 0 0 0 0 0 0 0 31754000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18275 419 17706 339366 206695 206695 1 SFELPALPYAK Unmodified 1234.6598 0.6597749 1008 P0AGD3 sodB Superoxide dismutase [Fe] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 46.269 44.756 1;2 0.00022228 22330 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.64 96.162 4539300000 464330000 511660000 522020000 2775400 2462500 0 477380000 438740000 445850000 0 1337800 0 247810000 234300000 260930000 0 0 0 303030000 343340000 283310000 0 0 0 18276 1008 17707 339367;339368;339369;339370;339371;339372;339373;339374;339375;339376;339377;339378;339379;339380;339381;339382;339383;339384;339385;339386;339387;339388;339389;339390;339391;339392;339393 206696;206697;206698;206699;206700;206701;206702;206703;206704;206705;206706;206707;206708;206709;206710;206711;206712;206713;206714;206715;206716;206717;206718;206719;206720;206721;206722 206696 16 SFESDAEAK Unmodified 982.42436 0.42435524 1665 P63417 yhbS Uncharacterized N-acetyltransferase YhbS yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.393 13.226 2 0.0063099 3836 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.379 70.404 435450000 28000000 1803000 24370000 0 0 0 52114000 58376000 43825000 0 0 0 40438000 45172000 46560000 0 0 0 36819000 30484000 27491000 0 0 0 18277 1665 17708 339394;339395;339396;339397;339398;339399;339400;339401;339402;339403;339404;339405 206723;206724;206725;206726;206727;206728;206729;206730;206731;206732 206729 1 SFFDGVK Unmodified 798.3912 0.39120462 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.719 27.418 2 0.018546 12925 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 78.616 64.203 223930000 20064000 14968000 19417000 1246100 1359500 1783500 14692000 13686000 11293000 8595200 6910300 5518000 9600300 9072000 9259300 1758800 1313000 1332800 19850000 20122000 20050000 4629900 3647900 3760600 18278 190 17709 339406;339407;339408;339409;339410;339411;339412;339413;339414;339415;339416;339417;339418;339419;339420;339421;339422;339423;339424;339425;339426;339427;339428;339429 206733;206734;206735;206736;206737;206738;206739;206740 206736 8 SFFENDLR Unmodified 1026.4771 0.47705951 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.168 30.083 2 0.0021719 14125 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.72 92.305 2155800000 219670000 181490000 159530000 0 862180 1349000 0 181830000 170260000 0 0 0 181810000 198770000 165410000 805830 1112000 871040 231660000 242950000 217450000 0 0 0 18279 183 17710 339430;339431;339432;339433;339434;339435;339436;339437;339438;339439;339440;339441;339442;339443;339444;339445 206741;206742;206743;206744;206745;206746;206747;206748;206749;206750;206751 206746 11 SFFGYVHPK Unmodified 1080.5393 0.53926584 575 P0AA47 plaP Low-affinity putrescine importer PlaP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 24.124 23.2 3 0.068317 8114 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 38.086 37.85 93068000 0 0 0 401690 395760 0 0 0 0 0 0 0 0 6426400 5643200 0 0 0 19043000 21608000 21514000 6843000 5347000 5846100 18280 575 17711 339446;339447;339448;339449;339450;339451;339452;339453;339454;339455;339456 206752;206753;206754;206755;206756;206757;206758;206759;206760 206752 9 SFFVGNDHMVEDVER Unmodified 1779.7886 0.7886336 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 2 2 2 1 2 2 33.382 31.821 2;3 5.4846E-09 15522 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 180.48 180.48 2186300000 144600000 141590000 121510000 2786200 2800800 2813200 157980000 184740000 162480000 3410100 3015900 3889900 189080000 181800000 181170000 0 3280500 0 210860000 229670000 244570000 4404200 4298800 5612900 18281 499 17712 339457;339458;339459;339460;339461;339462;339463;339464;339465;339466;339467;339468;339469;339470;339471;339472;339473;339474;339475;339476;339477;339478;339479;339480;339481;339482;339483;339484;339485;339486;339487;339488;339489;339490;339491;339492;339493;339494 206761;206762;206763;206764;206765;206766;206767;206768;206769;206770;206771;206772;206773;206774;206775;206776 206761 16 SFGAEDSHK Unmodified 976.42502 0.42502394 316 P0A780 nusB N utilization substance protein B yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.335 11.104 2 0.0011963 2438 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.709 90.709 590140000 47452000 45153000 41793000 0 0 0 32489000 57641000 45779000 0 0 10642000 42973000 47879000 38074000 0 0 0 67987000 60693000 51589000 0 0 0 18282 316 17713 339495;339496;339497;339498;339499;339500;339501;339502;339503;339504;339505;339506;339507;339508 206777;206778;206779;206780;206781;206782 206779 6 SFGAMQTFNSSEMSAPQMQSVLR Unmodified 2533.14 0.13996401 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.731 46.316 2;3 2.372E-63 22730 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 350.88 350.88 467040000 91826000 98949000 84879000 0 0 0 32666000 32154000 30023000 0 0 0 16561000 18770000 12249000 0 0 0 14383000 16249000 18328000 0 0 0 18283 553 17714 339509;339510;339511;339512;339513;339514;339515;339516;339517;339518;339519;339520;339521;339522;339523;339524;339525;339526;339527;339528;339529;339530;339531;339532 206783;206784;206785;206786;206787;206788;206789;206790;206791;206792 206788 10 SFGAPTITK Unmodified 920.49673 0.49673232 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 20.971 21.032 2 0.0038372 8544 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 80.165 15.408 15744000000 1618600000 0 1304600000 45213000 41596000 38928000 1047900000 1454100000 1555300000 60808000 74867000 74756000 1242000000 1076100000 1025400000 14282000 8825000 10268000 1683000000 1798700000 1479700000 46759000 0 42496000 18284 240 17715 339533;339534;339535;339536;339537;339538;339539;339540;339541;339542;339543;339544;339545;339546;339547;339548;339549;339550;339551;339552;339553;339554;339555;339556;339557;339558 206793;206794;206795;206796;206797;206798;206799;206800;206801;206802;206803;206804;206805;206806;206807;206808;206809 206801 13 SFGASPR Unmodified 720.35549 0.35548781 1095 P14176 proW Glycine betaine/L-proline transport system permease protein ProW yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 2 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 12.005 12.606 2 0.010371 3499 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.872 77.632 507440000 19090000 24575000 16247000 0 8627300 0 82068000 86915000 82517000 13752000 11046000 11881000 6819200 43977000 2257700 2539300 2095800 2355800 0 32574000 26502000 10216000 11134000 10250000 18285 1095 17716 339559;339560;339561;339562;339563;339564;339565;339566;339567;339568;339569;339570;339571;339572;339573;339574;339575;339576;339577;339578;339579;339580;339581;339582;339583;339584 206810;206811;206812 206810 3 SFGDIPLVHGMPFISGIGIEALQNK Unmodified 2639.3781 0.3781441 1461 P37188 gatB Galactitol-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 1 2 2 3 4 2 2 1 1 3 2 2 1 2 2 2 2 1 2 1 54.975 53.621 2;3 1.9831E-98 26401 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 338.5 334.89 7434600000 908490000 97971000 853720000 100840000 90737000 96594000 632930000 674280000 613450000 70392000 61886000 51426000 645760000 528390000 599340000 0 45535000 70061000 399910000 418190000 416460000 16989000 21399000 19885000 18286 1461 17717 339585;339586;339587;339588;339589;339590;339591;339592;339593;339594;339595;339596;339597;339598;339599;339600;339601;339602;339603;339604;339605;339606;339607;339608;339609;339610;339611;339612;339613;339614;339615;339616;339617;339618;339619;339620;339621;339622;339623;339624;339625;339626;339627;339628;339629 206813;206814;206815;206816;206817;206818;206819;206820;206821;206822;206823;206824;206825;206826;206827;206828;206829;206830;206831;206832;206833;206834;206835;206836;206837;206838;206839;206840;206841;206842 206834 30 SFGDIPLVHGMPFISGIGIEALQNK Oxidation (M) 2655.3731 0.37305872 1461 P37188 gatB Galactitol-specific phosphotransferase enzyme IIB component yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.427 52.035 3 9.8475E-05 18988 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 76.02 73.087 109090000 9653800 0 9131400 4972700 6126400 5270200 27335000 0 0 0 4632600 3943300 5594000 8673800 6997100 0 0 0 5650200 5791400 5320000 0 0 0 18287 1461 17717 339630;339631;339632;339633;339634;339635;339636;339637;339638;339639;339640;339641;339642;339643 206843;206844;206845;206846 206845 556 4 SFHMGEAFHQHER Unmodified 1611.7001 0.70009337 472 P0A8Y3 yihX Alpha-D-glucose-1-phosphate phosphatase YihX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 3 3 3 3 3 3 3 2 2 3 3 2 12.938 13.788 2;3;4 3.9796E-07 4013 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.02 135.36 572730000 56377000 47649000 50948000 0 0 0 66444000 53829000 55531000 0 0 0 43916000 20939000 33314000 0 0 0 51705000 51690000 40387000 0 0 0 18288 472 17718 339644;339645;339646;339647;339648;339649;339650;339651;339652;339653;339654;339655;339656;339657;339658;339659;339660;339661;339662;339663;339664;339665;339666;339667;339668;339669;339670;339671;339672;339673;339674;339675;339676 206847;206848;206849;206850;206851;206852;206853;206854;206855;206856 206849 9 SFIDPEVLR Unmodified 1074.571 0.5709599 1022 P0AGJ5 yfiF Uncharacterized tRNA/rRNA methyltransferase YfiF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 38.603 37.089 2 0.0039646 17954 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.713 62.937 59168000 18145000 12393000 11085000 0 0 0 0 0 0 0 0 0 2073200 1737000 1609600 0 0 0 4598700 3696700 3828800 0 0 0 18289 1022 17719 339677;339678;339679;339680;339681;339682;339683;339684;339685 206857;206858;206859 206858 3 SFIIVTHYQR Unmodified 1262.6772 0.6771563 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 1 1 1 1 1 1 1 25.193 24.018 2;3 1.0068E-06 10393 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.81 137.42 346730000 28253000 28022000 22749000 0 0 0 45163000 55458000 54698000 2262200 1733400 0 15167000 12887000 12874000 0 0 0 22479000 22915000 22066000 0 0 0 18290 1910 17720 339686;339687;339688;339689;339690;339691;339692;339693;339694;339695;339696;339697;339698;339699;339700;339701;339702;339703;339704 206860;206861;206862;206863;206864;206865;206866;206867;206868;206869;206870;206871;206872;206873;206874;206875 206871 5 SFINTVPHMSFVWGEDNVNFLR Unmodified 2608.2533 0.25327793 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 53.568 52.57 3 4.0399E-28 20995 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 186.06 178.61 89736000 0 0 3573300 0 0 0 0 0 0 9065700 0 0 0 0 0 6843100 0 5202800 0 0 0 19766000 23626000 21660000 18291 1435 17721 339705;339706;339707;339708;339709;339710;339711 206876;206877;206878;206879;206880 206879 5 SFISVIAGGFGTDGSSTGDDQEVGEHR Unmodified 2724.2263 0.22633072 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.427 45.861 3 8.6131E-12 21390 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 133.15 131.44 321310000 7062800 0 0 1959300 2147900 1978000 33170000 34823000 37956000 12229000 10623000 9504700 24722000 25903000 25110000 0 0 0 30004000 26067000 25382000 3395000 4576500 4696300 18292 633 17722 339712;339713;339714;339715;339716;339717;339718;339719;339720;339721;339722;339723;339724;339725;339726;339727;339728;339729;339730 206881;206882;206883 206883 3 SFLDASPDLVFYR Unmodified 1528.7562 0.75619449 846 P0AEC3 arcB Aerobic respiration control sensor protein ArcB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 52.888 51.492 2 5.1787E-07 25161 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.11 136.42 83579000 4351100 5885900 5318700 0 0 0 6589500 8852200 8831900 0 0 0 8017900 5638600 5188300 0 0 0 6845800 9386400 6971200 0 0 1701100 18293 846 17723 339731;339732;339733;339734;339735;339736;339737;339738;339739;339740;339741;339742;339743 206884;206885;206886;206887 206886 4 SFLESLGSDQAK Unmodified 1280.6248 0.62484596 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.667 31.28 2 3.57E-08 14782 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 161.63 134.52 2174700000 180920000 161330000 152810000 3410000 3701900 3544600 194910000 175850000 166940000 0 0 0 163620000 162740000 157000000 0 0 0 209180000 226570000 212190000 0 0 0 18294 295 17724 339744;339745;339746;339747;339748;339749;339750;339751;339752;339753;339754;339755;339756;339757;339758 206888;206889;206890;206891;206892;206893;206894;206895;206896;206897 206889 9 SFLGASGLKPQQVALFEDLVCAMMLHIR Unmodified 3130.613 0.61298819 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 55.533 54.63 4 1.5901E-07 20827 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 96.793 94.035 433990000 0 0 0 0 0 0 0 0 0 15380000 14647000 0 0 0 0 47880000 71336000 86962000 0 0 0 65906000 70231000 61651000 18295 1448 17725 339759;339760;339761;339762;339763;339764;339765;339766 206898;206899;206900;206901;206902;206903;206904;206905 206899 6 SFLGHYLGAR Unmodified 1119.5825 0.58252764 589 P0AAD6 sdaC Serine transporter yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.072 26.648 3 0.036388 9976 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 37.344 14.025 93735000 0 7268300 3393300 0 0 0 4445300 5449000 5140600 1632000 2146300 1542200 8819600 8396400 8345300 0 0 0 13254000 10554000 8895500 1693300 1382800 1377800 18296 589 17726 339767;339768;339769;339770;339771;339772;339773;339774;339775;339776;339777;339778;339779;339780;339781;339782;339783 206906;206907;206908 206907 0 SFLLDAGAEYNGYAADLTR Unmodified 2045.9694 0.96943474 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 50.567 49.262 2 3.2753E-17 23137 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 159.52 147.46 107980000 8883000 7927400 8301000 0 0 0 0 0 0 0 0 0 13845000 12012000 0 0 0 0 17344000 20322000 19347000 0 0 0 18297 1170 17727 339784;339785;339786;339787;339788;339789;339790;339791 206909;206910;206911;206912;206913;206914;206915 206915 4 SFLSYTR Unmodified 872.43922 0.43921744 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.24 24.204 2 0.0035704 11066 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.43 103.73 215300000 30531000 21926000 22092000 0 0 0 27097000 26475000 29545000 0 0 0 15371000 9728200 10928000 0 0 0 6087400 7912900 7613000 0 0 0 18298 427 17728 339792;339793;339794;339795;339796;339797;339798;339799;339800;339801;339802;339803 206916;206917 206916 2 SFMAMTAGNEHVR Unmodified 1449.6493 0.64930335 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 20.857 21.143 3 0.097291 6175 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 35.487 35.246 17988000 0 0 0 5446100 6519800 6021900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18299 152 17729 339804;339805;339806 206918 206918 0 SFQDTTGSGTGDLR Unmodified 1440.6481 0.6481006 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.612 19.011 2 1.2446E-19 7222 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 212.89 209.11 5248200000 10861000 12408000 9494700 1378200 1647900 1654000 487240000 402550000 495450000 2870500 1677300 2032400 637940000 506790000 531760000 0 0 0 728700000 730610000 671370000 3547800 4317300 3866000 18300 1324 17730 339807;339808;339809;339810;339811;339812;339813;339814;339815;339816;339817;339818;339819;339820;339821;339822;339823;339824;339825;339826;339827 206919;206920;206921;206922;206923;206924;206925;206926;206927;206928;206929;206930;206931;206932;206933 206923 15 SFQNEDLQR Unmodified 1135.5258 0.52580062 795 P0ADP0 yigB Flavin mononucleotide phosphatase YigB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 15.344 16.066 2 7.0997E-05 5381 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.61 134.75 148890000 16902000 18229000 13865000 0 0 0 14975000 13503000 13086000 0 0 3874200 0 10576000 10202000 0 0 0 16943000 0 16738000 0 0 0 18301 795 17731 339828;339829;339830;339831;339832;339833;339834;339835;339836;339837;339838 206934;206935;206936 206935 3 SFQNQYGNISSASVGAIQR Unmodified 2025.9868 0.98681614 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 2 2 1 1 1 1 1 33.332 31.759 2;3 1.3137E-55 15165 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 283.21 268.96 99295000 12552000 16127000 11239000 6133000 6246200 5081400 11009000 11201000 6274000 0 0 0 2196000 1948000 0 0 0 0 4474300 4815000 0 0 0 0 18302 1528 17732 339839;339840;339841;339842;339843;339844;339845;339846;339847;339848;339849;339850;339851;339852;339853;339854;339855;339856 206937;206938;206939 206938 3 SFSCPLCHQPLSR Unmodified 1587.7286 0.7286163 1453 P36999 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.915 21.984 3 0.00044065 8484 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 57.804 43.242 90517000 6000900 5472300 6585500 0 0 0 6708100 6742000 0 0 0 0 9217500 7718400 6395800 0 0 0 10637000 12804000 12236000 0 0 0 18303 1453 17733 339857;339858;339859;339860;339861;339862;339863;339864;339865;339866;339867 206940;206941;206942;206943 206943 1 SFSHQAGASSK Unmodified 1105.5152 0.51523593 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 2 2 2 1 1 1 7.5726 8.2585 2 3.9559E-15 1895 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 189.58 176.6 1986900000 297270000 264240000 260320000 11449000 12099000 11588000 60202000 66161000 74391000 0 37137000 27854000 128480000 118770000 125030000 12175000 11444000 11781000 139510000 143660000 135220000 15927000 10419000 11788000 18304 67 17734 339868;339869;339870;339871;339872;339873;339874;339875;339876;339877;339878;339879;339880;339881;339882;339883;339884;339885;339886;339887;339888;339889;339890;339891;339892;339893;339894;339895;339896;339897;339898;339899 206944;206945;206946;206947;206948;206949;206950;206951;206952;206953;206954;206955;206956;206957;206958;206959;206960;206961;206962;206963;206964 206947 19 SFTFVTK Unmodified 828.43815 0.43815481 350 P0A7J7 rplK 50S ribosomal protein L11 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.587 24.514 2 0.0017574 11350 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.34 87.786 6971900000 822630000 785700000 698460000 53452000 42521000 53390000 327540000 353740000 348450000 78743000 83934000 83387000 368020000 368520000 326990000 45375000 39425000 37536000 628720000 588170000 615610000 73824000 75723000 72042000 18305 350 17735 339900;339901;339902;339903;339904;339905;339906;339907;339908;339909;339910;339911;339912;339913;339914;339915;339916;339917;339918;339919;339920;339921;339922;339923 206965;206966;206967;206968;206969;206970;206971;206972;206973;206974;206975;206976;206977;206978;206979;206980;206981;206982;206983 206968 18 SFTHLAPIHGTHIVER Unmodified 1813.9588 0.95875089 1271 P25742 rfaQ Lipopolysaccharide core heptosyltransferase RfaQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 2 1 2 2 2 2 1 2 2 2 18.302 18.698 3;4 0.00015074 5797 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 67.605 62.063 127530000 2294300 0 0 0 953190 900530 17233000 16724000 11610000 6754900 6038500 7768800 9256200 5327800 5609000 0 0 0 7632100 13143000 12305000 3980300 0 0 18306 1271 17736 339924;339925;339926;339927;339928;339929;339930;339931;339932;339933;339934;339935;339936;339937;339938;339939;339940;339941;339942;339943;339944;339945;339946;339947;339948;339949;339950 206984;206985;206986 206984 3 SFTMSNPNR Unmodified 1052.4709 0.47092828 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 15.668 16.462 2 1.0438E-05 5621 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 166.17 142.65 1479600000 158180000 163890000 136110000 0 0 0 141780000 154960000 139190000 0 0 0 0 98087000 99269000 0 0 0 130840000 130520000 126770000 0 0 0 18307 94 17737 339951;339952;339953;339954;339955;339956;339957;339958;339959;339960;339961 206987;206988;206989;206990;206991;206992;206993;206994;206995;206996 206994 10 SFTTSGCFAR Unmodified 1132.4971 0.49714303 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 20.742 21.127 2 0.00010903 8494 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 129.65 125.29 119740000 3143400 0 0 0 0 0 6570600 0 0 0 0 0 8226600 11087000 8822800 0 0 0 27314000 29854000 24725000 0 0 0 18308 865 17738 339962;339963;339964;339965;339966;339967;339968;339969 206997;206998;206999;207000;207001;207002 206997 6 SFVAQGVDAIFIAPVVATGWEPVLK Unmodified 2613.4207 0.42066084 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 55.784 54.392 3 5.3393E-22 26787 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.98 157.44 283840000 112520000 83325000 85553000 0 0 0 0 0 0 0 0 0 2440800 0 0 0 0 0 0 0 0 0 0 0 18309 1525 17739 339970;339971;339972;339973 207003;207004;207005 207005 3 SFVAVHNQPGLYVGQQAR Unmodified 1970.0122 0.012243026 1462 P37194 slp Outer membrane protein slp yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 1 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 26.836 25.519 2;3 2.5153E-36 9709 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 274 261.23 519720000 40702000 36122000 33962000 10536000 12654000 11433000 60440000 53677000 54646000 48554000 45061000 56743000 9062500 6741500 8378500 0 0 0 10875000 9491800 8022100 0 0 2623000 18310 1462 17740 339974;339975;339976;339977;339978;339979;339980;339981;339982;339983;339984;339985;339986;339987;339988;339989;339990;339991;339992;339993;339994;339995;339996;339997;339998;339999;340000;340001;340002;340003 207006;207007;207008;207009;207010;207011;207012;207013;207014 207006 6 SFVDGEWR Unmodified 994.45084 0.45084476 1766 P75736 ybfF Esterase YbfF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.102 28.746 2 0.0005721 13795 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.29 128.35 271830000 39026000 34203000 31785000 0 0 0 18043000 20662000 20066000 0 0 0 17217000 15126000 11972000 0 0 0 20560000 20293000 22878000 0 0 0 18311 1766 17741 340004;340005;340006;340007;340008;340009;340010;340011;340012;340013;340014;340015 207015;207016;207017;207018;207019;207020;207021;207022 207015 6 SFVPLAHTNEAR Unmodified 1340.6837 0.68369824 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 18.076 18.674 2 2.2979E-06 6891 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.83 134.08 65702000 20955000 23789000 20957000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18312 1173 17742 340016;340017;340018 207023;207024;207025 207025 3 SFVVIIPAR Unmodified 1000.607 0.60695147 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.602 37.803 2 0.00034767 18251 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.7 113.7 833580000 61251000 56306000 58140000 0 0 670500 79105000 73448000 68849000 817350 0 729190 57373000 57829000 52403000 0 0 0 83308000 86776000 96576000 0 0 0 18313 97 17743 340019;340020;340021;340022;340023;340024;340025;340026;340027;340028;340029;340030;340031;340032;340033 207026;207027;207028;207029;207030;207031;207032;207033;207034;207035;207036 207033 10 SFVVSNQLR Unmodified 1048.5665 0.56654322 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 24.208 23.381 2 2.9459E-05 10142 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 154.31 119.5 216670000 43481000 36056000 39908000 32675000 32534000 32013000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18314 151 17744 340034;340035;340036;340037;340038;340039 207037;207038;207039;207040 207039 4 SFWLSAAR Unmodified 936.48175 0.48175096 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.943 33.486 2 0.00074398 15304 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 125.01 113.1 139680000 10447000 10352000 9072100 0 0 0 11959000 11308000 8586400 0 0 0 11110000 11234000 9706100 0 0 0 15636000 17696000 12577000 0 0 0 18315 1979 17745 340040;340041;340042;340043;340044;340045;340046;340047;340048;340049;340050;340051 207041;207042;207043;207044 207044 4 SFYENSEVDK Unmodified 1216.5248 0.52479757 1820 P76128 ddpA Probable D,D-dipeptide-binding periplasmic protein DdpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 17.86 18.398 2 0.00040695 6785 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.1 105.1 26612000 7553700 8984600 8878900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1194300 0 0 18316 1820 17746 340052;340053;340054;340055 207045;207046;207047 207045 3 SFYMCACR Unmodified 1093.4143 0.41434138 1538 P39407 yjjU Uncharacterized protein YjjU yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 22.72 21.991 2 0.032315 7450 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 71.852 71.852 29403000 0 0 0 0 0 0 5235400 4413500 5771100 4378000 3319800 2909600 1846200 0 0 0 0 0 0 1529600 0 0 0 0 18317 1538 17747 340056;340057;340058;340059;340060;340061;340062;340063 207048;207049 207049 1 SFYQGLFGLDK Unmodified 1273.6343 0.63428844 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.944 46.53 2 0.0025329 22650 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 70.1 67.89 286560000 31407000 25918000 25903000 0 0 0 22764000 20563000 19912000 0 0 0 20003000 17987000 16812000 0 0 0 25000000 32236000 28053000 0 0 0 18318 1774 17748 340064;340065;340066;340067;340068;340069;340070;340071;340072;340073;340074;340075 207050 207050 1 SGADDPEMAEIAEECK Unmodified 1750.7026 0.70258029 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.479 27.231 2 2.8791E-18 12621 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 184.1 184.1 150450000 14999000 11322000 11807000 0 0 0 10106000 12909000 9634500 0 0 0 13139000 11814000 9568000 0 0 0 12038000 16535000 16583000 0 0 0 18319 1759 17749 340076;340077;340078;340079;340080;340081;340082;340083;340084;340085;340086;340087 207051;207052;207053 207051 3 SGADDPEMAEIAEECKQECYDLFVQAAQQEK Unmodified 3588.5331 0.53307871 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 2 2 2 2 2 2 48.624 47.301 3;4 1.0476E-42 23250 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 203.94 202.24 679530000 31712000 51620000 47978000 0 0 0 53989000 47419000 37637000 0 0 0 48988000 54816000 59931000 0 0 0 81583000 80894000 82964000 0 0 0 18320 1759 17750 340088;340089;340090;340091;340092;340093;340094;340095;340096;340097;340098;340099;340100;340101;340102;340103;340104;340105;340106;340107;340108;340109 207054;207055;207056;207057;207058;207059;207060;207061;207062;207063;207064;207065;207066;207067;207068;207069;207070;207071 207056 18 SGAFVPGIRPGEQTAK Unmodified 1613.8526 0.85255449 1001 P0AGA2 secY Protein translocase subunit SecY yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 21.004 21.102 2;3 2.8271E-13 8735 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.62 146.33 1942600000 49000000 50810000 46121000 13777000 14749000 17274000 137450000 136450000 131340000 41314000 47060000 44433000 179810000 158100000 140440000 14700000 10298000 8781000 168210000 216650000 215550000 32189000 38843000 29221000 18321 1001 17751 340110;340111;340112;340113;340114;340115;340116;340117;340118;340119;340120;340121;340122;340123;340124;340125;340126;340127;340128;340129;340130;340131;340132;340133;340134;340135;340136;340137;340138;340139;340140;340141;340142;340143;340144;340145;340146;340147;340148;340149;340150 207072;207073;207074;207075;207076;207077;207078;207079;207080;207081;207082;207083;207084;207085;207086;207087;207088;207089;207090;207091;207092;207093;207094;207095;207096;207097;207098;207099;207100;207101;207102;207103;207104;207105;207106;207107;207108;207109 207085 36 SGAGQYFTPR Unmodified 1082.5145 0.51450765 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 19.322 19.855 2 2.6089E-05 7872 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.79 128.8 180280000 7742600 7958600 8986000 0 0 0 0 21125000 19771000 0 0 0 19890000 21558000 15975000 0 0 0 0 29671000 27598000 0 0 0 18322 194 17752 340151;340152;340153;340154;340155;340156;340157;340158;340159;340160 207110;207111;207112;207113;207114;207115 207110 6 SGAKPGDWIYVTGTPGDSAAGLAILQNR Unmodified 2814.4301 0.43005633 1016 P0AGG0 thiL Thiamine-monophosphate kinase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 48.816 47.576 3 2.5881E-11 23353 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.27 126.66 114080000 17295000 19328000 18234000 0 0 0 0 0 0 0 0 0 10277000 0 0 0 0 0 20044000 16825000 12076000 0 0 0 18323 1016 17753 340161;340162;340163;340164;340165;340166;340167 207116;207117;207118 207117 3 SGALAGTVLNDANNQAK Unmodified 1642.8275 0.82746195 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 25.519 24.423 2;3 1.4448E-39 11179 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 337.8 333.71 4233600000 1172200000 1137900000 982070000 1480200 1290500 1202500 98622000 90233000 93177000 0 0 0 85553000 86625000 79789000 0 0 0 140510000 133850000 129100000 0 0 0 18324 852 17754 340168;340169;340170;340171;340172;340173;340174;340175;340176;340177;340178;340179;340180;340181;340182;340183;340184;340185;340186;340187;340188;340189;340190;340191;340192;340193;340194 207119;207120;207121;207122;207123;207124;207125;207126;207127;207128;207129;207130;207131;207132;207133;207134 207120 16 SGALQEQVANK Unmodified 1143.5884 0.58840088 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 12.584 13.437 2 7.0269E-06 3743 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 150.36 123.98 1590700000 124730000 119860000 134820000 0 0 0 0 0 238080000 0 0 0 177930000 147430000 171030000 0 0 0 0 249650000 227210000 0 0 0 18325 60 17755 340195;340196;340197;340198;340199;340200;340201;340202;340203;340204 207135;207136;207137;207138;207139;207140;207141;207142;207143;207144;207145 207143 11 SGALTESPVVR Unmodified 1114.5982 0.59823728 756 P0ACY1 ydjA Putative NAD(P)H nitroreductase YdjA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.195 19.763 2 4.1921E-08 7142 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 177.36 158.27 2255200000 208980000 189240000 165390000 1159800 1000500 953250 285190000 272300000 267460000 0 0 0 114620000 118410000 109380000 0 0 0 181900000 186620000 152570000 0 0 0 18326 756 17756 340205;340206;340207;340208;340209;340210;340211;340212;340213;340214;340215;340216;340217;340218;340219 207146;207147;207148;207149;207150;207151;207152;207153;207154;207155;207156;207157 207156 12 SGALTVSEIAAAGLPALFVPFQHK Unmodified 2423.3213 0.32128114 1139 P17443 murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 54.824 53.377 3 0.084783 21585 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 31.176 28.414 25127000 0 0 0 0 0 1993800 0 0 0 6192000 8392100 5853400 0 0 2696100 0 0 0 0 0 0 0 0 0 18327 1139 17757 340220;340221;340222;340223;340224 207158 207158 1 SGAPDDESTELGPLSSLAHLER Unmodified 2280.087 0.086983692 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 45.512 43.943 2;3 4.1689E-28 21577 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 249.71 244.63 1067400000 338820000 337370000 304910000 0 0 0 27217000 27199000 29559000 0 0 2360700 0 0 0 0 0 0 0 0 0 0 0 0 18328 1925 17758 340225;340226;340227;340228;340229;340230;340231;340232;340233;340234 207159;207160;207161;207162;207163;207164;207165 207161 7 SGAQAVCFAPDK Unmodified 1249.5761 0.57612163 681 P0ABU5 elbB Enhancing lycopene biosynthesis protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.4 20.814 2 2.2352E-06 8132 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.24 121.15 1528000000 141470000 119500000 122230000 0 0 0 179200000 175180000 179130000 0 0 0 110990000 114130000 88967000 0 0 0 96716000 94283000 106180000 0 0 0 18329 681 17759 340235;340236;340237;340238;340239;340240;340241;340242;340243;340244;340245;340246 207166;207167;207168;207169;207170;207171;207172;207173;207174;207175;207176;207177 207172 12 SGAQGDAFLAR Unmodified 1091.536 0.53597137 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 20.183 20.673 2 1.0342E-05 7969 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.79 138.02 233210000 78028000 74071000 76476000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2513400 2125500 0 0 0 18330 1835 17760 340247;340248;340249;340250;340251 207178;207179 207179 2 SGASNSLTLESSLR Unmodified 1420.7158 0.71578623 393 P0A840 surE 5'/3'-nucleotidase SurE yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 27.508 26.37 2 1.2148E-05 11921 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.2 94.039 68055000 7752200 9563100 7726000 0 0 0 6386100 4671000 0 0 0 0 6267300 4531500 0 0 0 0 7275700 6572300 7309900 0 0 0 18331 393 17761 340252;340253;340254;340255;340256;340257;340258;340259;340260;340261 207180;207181 207180 2 SGASVGIDDMVIPEK Oxidation (M) 1532.7392 0.73922379 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 4 4 7 5 5 4 5 3 31.726 30.59 2 1.1069E-05 10219 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 95.417 86.229 429210000 0 0 3645600 0 0 0 1963500 0 2137700 32647000 66219000 63825000 0 0 0 70439000 41187000 41174000 0 0 0 35794000 39304000 30876000 18332 458 17762 340262;340263;340264;340265;340266;340267;340268;340269;340270;340271;340272;340273;340274;340275;340276;340277;340278;340279;340280;340281;340282;340283;340284;340285;340286;340287;340288;340289;340290;340291;340292;340293;340294;340295;340296;340297;340298;340299;340300;340301;340302;340303;340304 207182;207183;207184;207185;207186;207187;207188;207189;207190;207191;207192;207193;207194;207195;207196;207197;207198;207199;207200;207201;207202;207203;207204;207205;207206;207207;207208;207209;207210;207211;207212;207213 207205 246 32 SGASVGIDDMVIPEK Unmodified 1516.7443 0.74430917 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 3 2 2 1 1 2 2 1 1 37.101 35.671 2 1.1919E-07 16645 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 133.32 129.3 16163000000 223850000 174000000 174560000 5554100 6028800 5903900 153040000 138020000 144490000 944560000 946080000 872140000 145280000 122870000 111930000 2834400000 2501700000 2441000000 226880000 198840000 208570000 1238100000 1126200000 1218500000 18333 458 17762 340305;340306;340307;340308;340309;340310;340311;340312;340313;340314;340315;340316;340317;340318;340319;340320;340321;340322;340323;340324;340325;340326;340327;340328;340329;340330;340331;340332;340333;340334;340335;340336 207214;207215;207216;207217;207218;207219;207220;207221;207222;207223;207224;207225;207226;207227;207228;207229;207230;207231;207232;207233;207234;207235;207236;207237;207238;207239;207240;207241;207242;207243;207244;207245;207246;207247;207248;207249;207250;207251;207252 207250 39 SGASVGIDDMVIPEKK Oxidation (M) 1660.8342 0.83418681 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 8 9 11 10 10 10 1 10 10 11 25.296 24.383 2;3 7.6774E-13 6396 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 158.04 151.15 1571900000 0 2603500 2188300 766580 989670 0 3042800 0 0 140240000 122590000 139060000 0 0 0 266390000 177330000 154590000 0 0 2052300 211920000 190650000 157510000 18334 458 17763 340337;340338;340339;340340;340341;340342;340343;340344;340345;340346;340347;340348;340349;340350;340351;340352;340353;340354;340355;340356;340357;340358;340359;340360;340361;340362;340363;340364;340365;340366;340367;340368;340369;340370;340371;340372;340373;340374;340375;340376;340377;340378;340379;340380;340381;340382;340383;340384;340385;340386;340387;340388;340389;340390;340391;340392;340393;340394;340395;340396;340397;340398;340399;340400;340401;340402;340403;340404;340405;340406;340407;340408;340409;340410;340411;340412;340413;340414;340415;340416;340417;340418;340419;340420;340421;340422;340423;340424;340425;340426;340427;340428;340429;340430;340431 207253;207254;207255;207256;207257;207258;207259;207260;207261;207262;207263;207264;207265;207266;207267;207268;207269;207270;207271;207272;207273;207274;207275;207276;207277;207278;207279;207280;207281;207282;207283;207284;207285;207286;207287;207288;207289;207290;207291;207292;207293;207294;207295;207296;207297;207298;207299;207300;207301;207302;207303;207304;207305;207306;207307;207308;207309;207310;207311;207312;207313;207314;207315;207316;207317;207318;207319;207320;207321;207322;207323;207324;207325;207326;207327;207328;207329;207330;207331;207332;207333;207334;207335;207336;207337 207266 246 82 SGASVGIDDMVIPEKK Unmodified 1644.8393 0.83927219 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 5 7 6 2 2 2 12 13 12 2 2 2 6 8 8 30.791 29.649 2;3;4 1.7839E-13 13350 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 192.15 186.65 44694000000 245550000 242050000 210320000 28812000 24808000 26575000 171140000 192520000 172040000 3230200000 2928500000 2827300000 151520000 154880000 134000000 9148800000 6272500000 6777000000 250650000 223570000 262890000 3740100000 3602000000 3675900000 18335 458 17763 340432;340433;340434;340435;340436;340437;340438;340439;340440;340441;340442;340443;340444;340445;340446;340447;340448;340449;340450;340451;340452;340453;340454;340455;340456;340457;340458;340459;340460;340461;340462;340463;340464;340465;340466;340467;340468;340469;340470;340471;340472;340473;340474;340475;340476;340477;340478;340479;340480;340481;340482;340483;340484;340485;340486;340487;340488;340489;340490;340491;340492;340493;340494;340495;340496;340497;340498;340499;340500;340501;340502;340503;340504;340505;340506;340507;340508;340509;340510;340511;340512;340513;340514;340515;340516;340517;340518;340519;340520;340521;340522;340523;340524;340525;340526;340527;340528;340529;340530;340531;340532;340533;340534;340535;340536;340537;340538 207338;207339;207340;207341;207342;207343;207344;207345;207346;207347;207348;207349;207350;207351;207352;207353;207354;207355;207356;207357;207358;207359;207360;207361;207362;207363;207364;207365;207366;207367;207368;207369;207370;207371;207372;207373;207374;207375;207376;207377;207378;207379;207380;207381;207382;207383;207384;207385;207386;207387;207388;207389;207390;207391;207392;207393;207394;207395;207396;207397;207398;207399;207400;207401;207402;207403;207404;207405;207406;207407;207408;207409;207410;207411;207412;207413;207414;207415;207416;207417;207418;207419;207420;207421;207422;207423;207424;207425;207426;207427;207428;207429;207430;207431;207432;207433;207434;207435;207436;207437;207438;207439;207440;207441;207442;207443;207444;207445;207446 207402 108 SGATTMAGGK Unmodified 879.41202 0.41201641 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 10.257 10.962 2 0.00035108 2408 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 108.74 80.636 376470000 30190000 231940 0 0 0 0 53372000 88319000 61944000 0 0 0 50582000 48970000 39346000 0 0 3512500 0 0 0 0 0 0 18336 554 17764 340539;340540;340541;340542;340543;340544;340545;340546;340547 207447;207448;207449;207450;207451;207452;207453 207449 7 SGATTMAGGK Oxidation (M) 895.40693 0.40693104 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 1 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 4.525 5.4299 2 0.063399 860 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 42.311 18.356 33954000 0 0 86803 0 0 0 0 10448000 10159000 0 0 0 5129800 3470400 4659200 0 0 0 0 0 0 0 0 0 18337 554 17764 340548;340549;340550;340551;340552;340553 207454;207455 207454 0 SGAVDVIVVDSVAALTPK Unmodified 1739.9669 0.96691554 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 2 2 2 54.473 53.325 2;3 1.3481E-17 21435 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 212.95 200.51 1459000000 53962000 49569000 40831000 22648000 23109000 24843000 48416000 37119000 32225000 346060000 244210000 207220000 0 0 0 43501000 36267000 36397000 0 0 47326000 56729000 52037000 56510000 18338 343 17765 340554;340555;340556;340557;340558;340559;340560;340561;340562;340563;340564;340565;340566;340567;340568;340569;340570;340571;340572;340573;340574;340575;340576;340577;340578;340579;340580;340581;340582;340583;340584 207456;207457;207458;207459;207460;207461;207462;207463;207464;207465;207466;207467;207468;207469;207470;207471;207472;207473;207474;207475;207476;207477;207478;207479;207480 207460 25 SGAYQSWIEQNYEGR Unmodified 1786.7911 0.79107644 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 35.624 33.901 2 2.9962E-15 16250 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 194.96 179.76 474280000 0 0 0 0 0 0 70507000 0 79959000 0 0 0 0 0 0 0 0 0 99053000 112210000 112540000 0 0 0 18339 1496 17766 340585;340586;340587;340588;340589 207481;207482;207483;207484;207485 207484 4 SGCLAVIEEVMLDEPQYWK Unmodified 2266.065 0.064991382 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 1 2 2 2 2 2 2 55.099 53.621 2;3 4.2751E-45 25341 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 311.7 311.7 5280900000 389650000 434630000 415470000 0 3028800 5152600 626240000 558710000 566760000 24384000 23505000 18727000 393600000 415490000 394080000 0 0 0 344190000 340050000 327240000 0 0 0 18340 1046 17767 340590;340591;340592;340593;340594;340595;340596;340597;340598;340599;340600;340601;340602;340603;340604;340605;340606;340607;340608;340609;340610;340611;340612;340613;340614;340615;340616;340617;340618;340619;340620 207486;207487;207488;207489;207490;207491;207492;207493;207494;207495;207496;207497;207498;207499;207500;207501;207502;207503;207504;207505;207506;207507;207508;207509;207510 207510 25 SGCLAVIEEVMLDEPQYWKK Unmodified 2394.16 0.1599544 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 53.322 51.918 3 1.2766E-05 18883 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 86.96 84.119 80370000 0 0 0 7246300 7483900 8484900 0 0 0 13297000 12725000 12026000 0 0 0 0 0 0 0 0 0 7633800 5594200 5879900 18341 1046 17768 340621;340622;340623;340624;340625;340626;340627;340628;340629 207511;207512;207513;207514;207515;207516 207515 6 SGCTNYLPTLITTSDELMK Unmodified 2143.0177 0.017706839 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.246 50.998 3 5.473E-07 24776 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.907 70.28 111580000 11869000 11315000 10968000 0 0 0 10125000 7140100 7918900 0 0 0 7704100 8821600 7729200 0 0 0 9534800 8728000 9725300 0 0 0 18342 904 17769 340630;340631;340632;340633;340634;340635;340636;340637;340638;340639;340640;340641 207517 207517 1 SGDACIAEYQQAGR Unmodified 1524.6627 0.66270481 126 P06709 birA Bifunctional ligase/repressor BirA yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 19.189 19.75 2 2.0536E-14 7543 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 187.97 187.97 91197000 9900400 8064100 7622200 0 0 266810 8136600 6868700 6088300 0 0 0 6840000 4913600 5329800 0 0 0 7645600 10409000 9111600 0 0 0 18343 126 17770 340642;340643;340644;340645;340646;340647;340648;340649;340650;340651;340652;340653;340654 207518;207519;207520;207521;207522;207523 207522 6 SGDDQLVEIIEVPNHPWFVACQFHPEFTSTPR Unmodified 3751.7729 0.77293054 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 2 3 3 3 3 1 3 3 3 1 1 3 3 3 1 53.599 52.242 3;4;5 7.4362E-83 25823 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 284.08 283.77 8511800000 451480000 358050000 369810000 9977900 9072900 8618300 811790000 777650000 743100000 0 13014000 0 782620000 642950000 573030000 4192400 0 6263100 980070000 1033400000 929980000 6730700 0 0 18344 337 17771 340655;340656;340657;340658;340659;340660;340661;340662;340663;340664;340665;340666;340667;340668;340669;340670;340671;340672;340673;340674;340675;340676;340677;340678;340679;340680;340681;340682;340683;340684;340685;340686;340687;340688;340689;340690;340691;340692;340693;340694;340695;340696;340697;340698;340699 207524;207525;207526;207527;207528;207529;207530;207531;207532;207533;207534;207535;207536;207537;207538;207539;207540;207541;207542;207543;207544;207545;207546;207547;207548;207549 207529 26 SGDFDTFR Unmodified 943.40356 0.40356022 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.175 22.448 2 1.8568E-09 6877 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 217.21 202.55 1848900000 112380000 103890000 98599000 0 0 0 51765000 54825000 58791000 73795000 46200000 48651000 74891000 71451000 83213000 136650000 101430000 105750000 87193000 82633000 88744000 128540000 117920000 121580000 18345 935 17772 340700;340701;340702;340703;340704;340705;340706;340707;340708;340709;340710;340711;340712;340713;340714;340715;340716;340717;340718;340719;340720 207550;207551;207552;207553;207554;207555;207556;207557;207558;207559;207560;207561;207562;207563;207564;207565;207566;207567;207568;207569;207570 207551 21 SGDFDTFRR Unmodified 1099.5047 0.50467125 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 1 1 3 3 2 1 2 1 3 4 4 2 1 1 3 2 4 16.792 17.157 1;2;3 1.1431E-05 4632 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 155.88 131.9 5521000000 3464600 7033500 5071900 1693100 3188400 2268600 7189000 3841700 2710000 302410000 119450000 209520000 3534300 4831300 2896800 1264900000 936030000 894480000 8624800 7041500 5202100 384700000 516860000 824100000 18346 935 17773 340721;340722;340723;340724;340725;340726;340727;340728;340729;340730;340731;340732;340733;340734;340735;340736;340737;340738;340739;340740;340741;340742;340743;340744;340745;340746;340747;340748;340749;340750;340751;340752;340753;340754;340755;340756;340757;340758;340759;340760;340761;340762;340763;340764;340765;340766;340767 207571;207572;207573;207574;207575;207576;207577;207578;207579;207580;207581;207582;207583;207584;207585;207586;207587;207588;207589;207590;207591;207592;207593 207576 22 SGDFQGQDK Unmodified 980.41994 0.41993856 1700 P64624 yheO Uncharacterized protein YheO yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.563 11.372 2 0.11664 2571 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 45.74 31.737 55115000 12485000 6946200 5378400 0 0 0 0 8902900 6227200 0 0 0 3543100 0 2127900 0 0 0 0 5298500 4206300 0 0 0 18347 1700 17774 340768;340769;340770;340771;340772;340773;340774;340775;340776 207594 207594 0 SGDFTLVK Unmodified 865.45453 0.45453316 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.055 23.116 2 0.0026172 9972 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.997 69.659 353690000 42171000 40195000 35891000 509580 1818200 0 33560000 34655000 35148000 0 0 3175600 16236000 15152000 13799000 0 0 0 30039000 25913000 22002000 1961500 0 1464200 18348 1910 17775 340777;340778;340779;340780;340781;340782;340783;340784;340785;340786;340787;340788;340789;340790;340791;340792;340793 207595;207596;207597;207598;207599;207600;207601 207597 7 SGDIAVLR Unmodified 829.46577 0.46576654 1797 P75958 lolE Lipoprotein-releasing system transmembrane protein LolE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 20.671 21.06 2 0.11599 7997 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 54.157 22.854 28193000 0 8924600 10048000 0 0 0 3253200 0 0 0 0 0 0 2756800 0 0 0 0 3210700 0 0 0 0 0 18349 1797 17776 340794;340795;340796;340797;340798 207602 207602 0 SGDIDPAIIFHLHDTLGMSVDAINK Unmodified 2678.3374 0.33740149 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 4 3 2 2 1 2 5 5 1 1 1 5 5 4 1 1 1 4 4 4 1 1 1 52.101 50.849 2;3;4 3.0282E-15 24826 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.08 136.89 3332300000 148190000 145870000 143020000 9981500 6207100 2146900 228450000 375030000 353300000 2370500 2462100 2952400 417830000 446220000 285360000 3231500 4133600 3599800 266790000 232690000 245660000 1794800 2178700 2873500 18350 224 17777 340799;340800;340801;340802;340803;340804;340805;340806;340807;340808;340809;340810;340811;340812;340813;340814;340815;340816;340817;340818;340819;340820;340821;340822;340823;340824;340825;340826;340827;340828;340829;340830;340831;340832;340833;340834;340835;340836;340837;340838;340839;340840;340841;340842;340843;340844;340845;340846;340847;340848;340849;340850;340851;340852;340853;340854;340855;340856;340857;340858;340859;340860;340861 207603;207604;207605;207606;207607;207608;207609;207610;207611;207612;207613;207614;207615;207616;207617;207618;207619;207620;207621;207622;207623;207624;207625;207626;207627;207628;207629;207630;207631;207632;207633;207634 207606 32 SGDLTAFEPELLK Unmodified 1418.7293 0.72931103 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.982 45.484 2 5.4328E-06 21383 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 127.42 113.22 500070000 53947000 47623000 45627000 0 0 0 31305000 35355000 29633000 1459500 0 0 35616000 35559000 32129000 0 0 0 49984000 56005000 42650000 0 1414900 1761500 18351 1221 17778 340862;340863;340864;340865;340866;340867;340868;340869;340870;340871;340872;340873;340874;340875;340876 207635;207636;207637;207638;207639;207640;207641;207642;207643;207644 207642 10 SGDNDSADYALVWHPPVEMLAGR Unmodified 2499.1489 0.14887244 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.033 49.778 3 0.13667 23162 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 33.074 33.074 389040000 43358000 35537000 33285000 884000 802910 970580 40572000 42090000 33685000 0 0 0 23596000 16064000 16435000 0 0 0 38174000 33537000 30049000 0 0 0 18352 1788 17779 340877;340878;340879;340880;340881;340882;340883;340884;340885;340886;340887;340888;340889;340890;340891 207645 207645 0 SGDPLLSPSAVATLR Unmodified 1482.8042 0.80420731 1859 P76422 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.203 39.252 2 1.4196E-06 18323 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 112.43 97.279 117960000 0 0 0 0 0 0 11705000 12839000 9693100 1177400 1322800 1236700 9149800 9565000 8366300 0 0 0 18344000 17859000 16703000 0 0 0 18353 1859 17780 340892;340893;340894;340895;340896;340897;340898;340899;340900;340901;340902;340903 207646;207647;207648;207649;207650 207649 4 SGDTLSAISK Unmodified 977.50294 0.50293991 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.275 17.742 2 4.8742E-05 5062 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 136.57 123.57 5344900000 871070000 918410000 769690000 265250000 233090000 192300000 436870000 454520000 436620000 96509000 93113000 92653000 76718000 55519000 55551000 11554000 9345300 10812000 122000000 0 101150000 15167000 14112000 12860000 18354 783 17781 340904;340905;340906;340907;340908;340909;340910;340911;340912;340913;340914;340915;340916;340917;340918;340919;340920;340921;340922;340923;340924;340925;340926 207651;207652;207653;207654;207655;207656;207657;207658;207659;207660;207661;207662 207655 6 SGDTWHATAELYK Unmodified 1477.6838 0.68375782 1699 P64614 yhcN Uncharacterized protein YhcN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 23.234 22.694 2;3 1.3345E-17 9733 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 215.87 201.2 114340000 41851000 34838000 30352000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7298200 0 0 0 18355 1699 17782 340927;340928;340929;340930;340931;340932;340933 207663;207664;207665;207666;207667;207668 207665 6 SGDTYLHTVPK Unmodified 1216.6088 0.60880197 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 15.208 15.736 2 0.00024024 4497 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 112.11 103.89 75637000 0 0 0 0 0 0 11303000 10613000 11833000 4080300 3635200 3783800 8163800 7947200 6237700 1650300 0 0 6389400 0 0 0 0 0 18356 600 17783 340934;340935;340936;340937;340938;340939;340940;340941;340942;340943;340944 207669;207670;207671;207672 207669 4 SGDVLAGVAAASSQER Unmodified 1516.7481 0.74814899 866 P0AEJ6 eutB Ethanolamine ammonia-lyase heavy chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.847 27.449 2 3.4245E-10 12614 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.24 138.29 93083000 16720000 18766000 11415000 900700 1701200 1762000 5880200 6083400 7040000 0 1113800 0 0 15442000 0 788740 0 0 0 0 0 1651000 1637900 2179900 18357 866 17784 340945;340946;340947;340948;340949;340950;340951;340952;340953;340954;340955;340956;340957;340958;340959;340960 207673;207674;207675;207676;207677;207678 207675 6 SGDWAYR Unmodified 853.37187 0.37186616 1907 P77454 glsA1 Glutaminase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.088 17.772 2 0.00074894 6495 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 145.88 145.88 336650000 37878000 40426000 32626000 0 143480 0 69195000 59882000 64515000 0 777210 0 6691100 8402100 5524800 0 0 0 5563500 0 5026300 0 0 0 18358 1907 17785 340961;340962;340963;340964;340965;340966;340967;340968;340969;340970;340971;340972;340973 207679;207680;207681;207682;207683;207684;207685;207686;207687;207688 207680 7 SGEGLYFIDK Unmodified 1127.5499 0.5498901 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.026 33.275 2 0.0001204 15891 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.6 128.6 4798600000 85938000 80604000 74493000 0 0 0 603650000 616230000 574780000 49909000 44383000 47319000 578320000 507990000 503010000 0 0 0 334930000 341520000 326880000 10126000 10152000 8318000 18359 501 17786 340974;340975;340976;340977;340978;340979;340980;340981;340982;340983;340984;340985;340986;340987;340988;340989;340990;340991;340992 207689;207690;207691;207692;207693;207694;207695;207696;207697;207698;207699;207700;207701;207702;207703;207704 207696 15 SGEGLYFIDKELSTLDTQN Unmodified 2129.0164 0.01644451 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 54.158 52.698 2;3 7.9665E-45 21193 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 248.76 245.8 547200000 0 0 0 0 0 0 21803000 17973000 16659000 130900000 88324000 87421000 28668000 21225000 17828000 0 0 0 22311000 18191000 12139000 22235000 22349000 19172000 18360 501 17787 340993;340994;340995;340996;340997;340998;340999;341000;341001;341002;341003;341004;341005;341006;341007;341008;341009;341010;341011;341012;341013;341014;341015;341016;341017;341018;341019;341020;341021 207705;207706;207707;207708;207709;207710;207711;207712;207713;207714 207709 10 SGEIDMTNNSMPIELFQK Unmodified 2052.9496 0.94962727 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 2 3 2 3 3 3 3 50.197 48.796 2;3 4.4084E-67 23854 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 299.2 294.02 10068000000 3085100000 2765200000 2462000000 10360000 11033000 13332000 205100000 201260000 186820000 0 0 0 167500000 146500000 175030000 0 0 0 213340000 227320000 197660000 0 0 0 18361 1217 17788 341022;341023;341024;341025;341026;341027;341028;341029;341030;341031;341032;341033;341034;341035;341036;341037;341038;341039;341040;341041;341042;341043;341044;341045;341046;341047;341048;341049;341050;341051;341052;341053;341054;341055;341056;341057;341058;341059;341060;341061 207715;207716;207717;207718;207719;207720;207721;207722;207723;207724;207725;207726;207727;207728;207729;207730;207731;207732;207733;207734;207735;207736;207737;207738;207739;207740;207741;207742;207743 207737 28 SGEIDMTNNSMPIELFQK Oxidation (M) 2068.9445 0.9445419 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 3 4 3 44.267 42.931 2 4.6937E-29 21663 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 215.53 215.53 180370000 60318000 69897000 50154000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18362 1217 17788 341062;341063;341064;341065;341066;341067;341068;341069;341070;341071 207744;207745;207746;207747;207748;207749;207750;207751;207752;207753;207754;207755;207756;207757 207751 509;510 14 SGEINVVIPAAVFDGR Unmodified 1642.8679 0.8678702 1361 P31130 ydeI Uncharacterized protein YdeI yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 2 1 50.734 49.29 2;3 1.9524E-10 23931 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.7 145.46 448870000 124520000 7523400 123330000 0 0 0 61138000 60448000 62738000 0 0 0 0 9168200 0 0 0 0 0 0 0 0 0 0 18363 1361 17789 341072;341073;341074;341075;341076;341077;341078;341079;341080 207758;207759;207760;207761 207761 2 SGELPVDNFGVPLAGSLIPWIDK Unmodified 2423.2737 0.27366225 549 P0A9Q9 asd Aspartate-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 1 2 2 55.812 54.358 2;3 3.7961E-22 26960 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 176.49 170.19 1481600000 190710000 199640000 227790000 0 0 0 75695000 57558000 45323000 0 0 0 113860000 116110000 111170000 0 0 0 82510000 126750000 134430000 0 0 0 18364 549 17790 341081;341082;341083;341084;341085;341086;341087;341088;341089;341090;341091;341092;341093;341094;341095;341096;341097;341098;341099;341100;341101 207762;207763;207764;207765;207766;207767;207768;207769;207770;207771;207772;207773;207774;207775;207776;207777;207778 207764 17 SGELVLDGK Unmodified 916.48656 0.48656157 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.142 20.377 2 0.00012357 8202 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.23 118.45 4749600000 23594000 20380000 17817000 4216700 3862100 4287500 581360000 545110000 566700000 8844700 7913000 7280100 471640000 446030000 368630000 5944700 4860300 5526000 525550000 540420000 557790000 12005000 10108000 9708300 18365 994 17791 341102;341103;341104;341105;341106;341107;341108;341109;341110;341111;341112;341113;341114;341115;341116;341117;341118;341119;341120;341121;341122;341123;341124;341125 207779;207780;207781;207782;207783;207784;207785;207786;207787;207788;207789;207790;207791;207792;207793;207794;207795;207796;207797;207798 207784 20 SGEPLIR Unmodified 770.42865 0.42865276 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.554 16.031 2 0.0012847 4303 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 132.72 91.797 654720000 0 0 0 12907000 13347000 12643000 28914000 34943000 35174000 24118000 25836000 23726000 0 0 23955000 8084800 5894500 5408800 97739000 93657000 83607000 40316000 39058000 45395000 18366 215 17792 341126;341127;341128;341129;341130;341131;341132;341133;341134;341135;341136;341137;341138;341139;341140;341141;341142;341143;341144 207799;207800;207801;207802;207803;207804;207805;207806;207807;207808;207809;207810;207811;207812 207800 11 SGEQTAVAQDSVAAHLR Unmodified 1738.8598 0.85982471 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 20.311 20.701 2;3 1.0497E-61 8136 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 301.93 297.08 2264100000 175980000 179050000 161100000 1078700 1055800 1588600 180910000 162940000 155900000 0 0 0 188240000 176890000 148860000 0 0 0 248360000 234520000 247610000 0 0 0 18367 1634 17793 341145;341146;341147;341148;341149;341150;341151;341152;341153;341154;341155;341156;341157;341158;341159;341160;341161;341162;341163;341164;341165;341166;341167;341168;341169;341170;341171 207813;207814;207815;207816;207817;207818;207819;207820;207821;207822;207823;207824;207825;207826;207827;207828;207829;207830;207831;207832;207833;207834;207835;207836 207825 24 SGEQVMLVTNETLAPLYLDK Unmodified 2220.1348 0.13478551 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.768 51.435 2 3.4029E-30 25101 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 219.52 216.05 154450000 12880000 16487000 14112000 0 0 0 14609000 10271000 10284000 0 0 0 12202000 8754700 12892000 0 0 0 14417000 13716000 13828000 0 0 0 18368 164 17794 341172;341173;341174;341175;341176;341177;341178;341179;341180;341181;341182;341183 207837;207838;207839;207840 207837 4 SGESPSDALLR Unmodified 1130.5568 0.5567664 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 23.193 22.518 2 4.5391E-06 9891 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.05 135.81 726480000 80546000 69715000 66423000 538100 806920 1076300 53489000 54056000 52713000 0 0 0 52752000 45436000 50761000 0 0 0 55515000 81342000 61309000 0 0 0 18369 289 17795 341184;341185;341186;341187;341188;341189;341190;341191;341192;341193;341194;341195;341196;341197;341198;341199 207841;207842;207843;207844;207845;207846;207847;207848;207849;207850;207851 207843 5 SGETEDATIADLAVGTAAGQIK Unmodified 2117.0488 0.048807271 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 3 4 3 2 2 2 2 2 2 3 3 4 46.562 44.955 2;3 4.7755E-119 22005 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 384.2 381 29325000000 2045800000 1801900000 1716700000 12491000 11703000 11815000 3227600000 3275300000 3033400000 8013800 7084000 9788800 2277900000 2177200000 2119700000 0 0 0 2498000000 2585100000 2505500000 0 0 0 18370 270 17796 341200;341201;341202;341203;341204;341205;341206;341207;341208;341209;341210;341211;341212;341213;341214;341215;341216;341217;341218;341219;341220;341221;341222;341223;341224;341225;341226;341227;341228;341229;341230;341231;341232;341233;341234;341235;341236;341237;341238;341239;341240;341241;341242;341243;341244 207852;207853;207854;207855;207856;207857;207858;207859;207860;207861;207862;207863;207864;207865;207866;207867;207868;207869;207870;207871;207872;207873;207874;207875;207876;207877;207878;207879;207880;207881;207882;207883;207884;207885;207886;207887;207888;207889;207890;207891;207892;207893;207894;207895 207863 40 SGETFWDLLEQAATQQAGETVSFR Unmodified 2670.2562 0.25617428 1312 P27838 cyaY Protein CyaY yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 55.802 54.368 3 0.0047421 26811 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 61.437 58.86 155860000 0 0 0 0 0 0 0 0 0 0 0 0 24883000 30220000 20992000 0 0 0 31468000 21340000 26955000 0 0 0 18371 1312 17797 341245;341246;341247;341248;341249;341250 207896;207897 207896 0 SGETGIEEGCLSIPEQR Unmodified 1860.8524 0.85235607 255 P0A6K3 def Peptide deformylase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.267 30.927 2 4.0996E-24 14731 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 250.67 244.7 177620000 13802000 16445000 12230000 0 0 0 14308000 14510000 11000000 0 0 0 14089000 14416000 15219000 0 0 0 17189000 18952000 15462000 0 0 0 18372 255 17798 341251;341252;341253;341254;341255;341256;341257;341258;341259;341260;341261;341262 207898;207899;207900;207901;207902;207903;207904;207905;207906;207907;207908 207900 11 SGEYVSR Unmodified 796.37153 0.37153181 265 P0A6N4 efp Elongation factor P yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 10.849 11.679 2 9.2764E-05 2907 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 174.21 167.82 3824400000 299710000 234520000 265990000 2796100 0 0 333450000 307390000 318850000 0 0 0 301900000 285140000 266740000 0 0 0 426400000 376660000 404880000 0 0 0 18373 265 17799 341263;341264;341265;341266;341267;341268;341269;341270;341271;341272;341273;341274;341275 207909;207910;207911;207912;207913;207914;207915;207916;207917;207918;207919;207920 207915 12 SGFDPQAMPTFLEK Unmodified 1566.7388 0.73882986 1708 P66948 bepA Beta-barrel assembly-enhancing protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.065 44.512 2 5.648E-08 21991 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 142.47 126.22 246720000 31517000 27068000 27058000 5590800 4455300 3606100 17259000 15487000 20151000 1765400 0 0 15390000 12907000 13585000 0 0 0 16732000 18153000 15995000 0 0 0 18374 1708 17800 341276;341277;341278;341279;341280;341281;341282;341283;341284;341285;341286;341287;341288;341289;341290;341291 207921;207922;207923;207924;207925;207926;207927 207923 7 SGFIFIGPK Unmodified 964.5382 0.53820321 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.772 37.893 2 0.0010092 17440 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 95.531 80.755 2596500000 173340000 148780000 152830000 4346400 4294600 5210700 243920000 236620000 229530000 5149600 5549800 4715700 233540000 210300000 196540000 0 0 0 367930000 354830000 0 7038500 5645000 6385400 18375 1236 17801 341292;341293;341294;341295;341296;341297;341298;341299;341300;341301;341302;341303;341304;341305;341306;341307;341308;341309;341310;341311 207928;207929;207930;207931;207932;207933;207934;207935;207936;207937;207938;207939 207939 12 SGFQYHGR Unmodified 950.43586 0.4358634 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.45 12.308 2 0.0021719 3046 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 102.72 98.582 1189400000 216850000 188150000 165080000 0 0 0 0 0 0 0 0 0 109100000 80345000 85697000 0 0 0 117010000 121250000 105940000 0 0 0 18376 1031 17802 341312;341313;341314;341315;341316;341317;341318;341319;341320 207940;207941;207942;207943;207944 207942 5 SGGAWMGNFVEQSTLNK Unmodified 1824.8465 0.84648283 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 41.272 39.623 2 1.936E-39 19214 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 250.67 245.18 335090000 55302000 49683000 54731000 0 0 0 20384000 20369000 26158000 0 0 0 14140000 14430000 13330000 0 0 0 22406000 21575000 22580000 0 0 0 18377 1233 17803 341321;341322;341323;341324;341325;341326;341327;341328;341329;341330;341331;341332;341333 207945;207946;207947;207948;207949;207950;207951;207952;207953;207954;207955;207956 207950 12 SGGGFSSGSAGIINYQR Unmodified 1656.7856 0.78559713 11 CON__P04264 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 29.696 27.84 2 9.9761E-20 10539 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 201.46 197.69 54919000 0 0 0 0 643890 594740 0 0 0 13118000 16788000 15912000 0 0 0 0 0 0 0 0 0 2389800 2605300 2867800 + 18378 11 17804 341334;341335;341336;341337;341338;341339;341340;341341 207957;207958;207959;207960 207958 4 SGGGGGGGFGR Unmodified 864.38383 0.38382783 14 CON__P13647 no no 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 11.284 11.621 2 5.0402E-08 2438 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 176.75 167 38616000 0 0 0 0 0 0 0 0 0 13445000 9355200 7923800 0 0 0 0 0 0 0 3018500 0 0 4873100 0 + 18379 14 17805 341342;341343;341344;341345;341346 207961;207962 207961 2 SGGGGGGGLGSGGSIR Unmodified 1231.5905 0.59052614 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.42 13.792 2 1.3969E-10 3011 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 153.38 150.16 1085400000 0 0 0 14193000 14564000 15162000 0 0 0 294050000 251600000 289900000 0 0 0 11291000 7808000 7457100 0 0 0 64449000 56614000 58292000 + 18380 16 17806 341347;341348;341349;341350;341351;341352;341353;341354;341355;341356;341357;341358 207963;207964;207965;207966;207967;207968;207969;207970;207971;207972;207973;207974 207974 12 SGGVTFAAR Unmodified 864.44537 0.44536545 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.891 16.439 2 9.3151E-05 5586 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 137.9 123.12 1178900000 165230000 165310000 136970000 3704500 2567000 2807100 65992000 63626000 59746000 7825300 7258800 6591100 60667000 49312000 40463000 6950600 3773800 5456500 111230000 101040000 91970000 6379000 6579800 7442100 18381 1630 17807 341359;341360;341361;341362;341363;341364;341365;341366;341367;341368;341369;341370;341371;341372;341373;341374;341375;341376;341377;341378;341379;341380;341381;341382 207975;207976;207977;207978;207979;207980;207981;207982;207983;207984;207985;207986;207987 207977 13 SGGVTFAARPQDHSQK Unmodified 1684.8281 0.82813065 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 3 3 3 3 2 2 3 3 12.292 12.687 2;3;4 5.2428E-18 2852 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 183.06 171.72 535170000 0 0 0 27513000 30082000 30279000 0 0 0 47994000 46663000 44048000 0 0 0 57581000 68114000 27795000 0 0 0 49564000 51325000 54208000 18382 1630 17808 341383;341384;341385;341386;341387;341388;341389;341390;341391;341392;341393;341394;341395;341396;341397;341398;341399;341400;341401;341402;341403;341404;341405;341406;341407;341408;341409;341410;341411;341412;341413;341414;341415 207988;207989;207990;207991;207992;207993;207994;207995;207996;207997;207998;207999;208000;208001;208002;208003;208004 207989 17 SGHALNNK Unmodified 839.42496 0.42496436 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 4.4569 5.3349 2 0.010031 1236 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 77.058 66.23 15234000 0 0 0 285440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4248600 6526600 4173600 0 0 0 18383 303 17809 341416;341417;341418;341419;341420 208005;208006 208006 1 SGHPGAPMGMADIAEVLWR Oxidation (M) 2009.9452 0.94515102 1299 P27302 tktA Transketolase 1 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 1 2 2 2 2 45.87 44.365 3 3.4363E-07 22548 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.9 95.975 198290000 11577000 0 0 0 0 0 25023000 30009000 12018000 0 0 0 11584000 14287000 23832000 0 0 0 21222000 23735000 25001000 0 0 0 18384 1299 17810 341421;341422;341423;341424;341425;341426;341427;341428;341429;341430;341431;341432;341433;341434;341435;341436 208007;208008;208009;208010;208011;208012;208013;208014;208015 208011 530;531 4 SGHPGAPMGMADIAEVLWR Unmodified 1993.9502 0.9502364 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 51.017 49.762 2;3 5.9959E-37 24017 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 239.75 237.43 11163000000 605330000 505650000 533420000 3070700 2351800 2173500 1145100000 1307900000 1227900000 0 0 0 911400000 965110000 965040000 0 0 0 987550000 1032400000 969060000 0 0 0 18385 1299 17810 341437;341438;341439;341440;341441;341442;341443;341444;341445;341446;341447;341448;341449;341450;341451;341452;341453;341454;341455;341456;341457;341458;341459;341460;341461;341462;341463 208016;208017;208018;208019;208020;208021;208022;208023;208024;208025;208026;208027;208028;208029;208030;208031;208032;208033;208034;208035;208036;208037;208038;208039;208040;208041 208028 26 SGIAHTMEEALAVAADVGFPCIIR Unmodified 2527.2563 0.2563144 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 55.165 53.74 3 2.7115E-30 26441 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 180.8 167.48 734770000 162880000 172360000 145520000 0 0 0 0 0 0 0 0 0 22670000 16796000 16057000 0 0 0 73335000 66191000 58952000 0 0 0 18386 65 17811 341464;341465;341466;341467;341468;341469;341470;341471;341472 208042;208043;208044;208045;208046;208047 208047 6 SGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNR Unmodified 4079.9656 0.96557547 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 50.019 48.65 3 0.15866 17513 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 7.0868 2.7706 34967000 0 0 0 8415900 0 5219600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8195700 7570500 5565400 18387 65 17812 341473;341474;341475;341476;341477 208048 208048 1 SGIGGADGK Unmodified 760.37153 0.37153181 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 1 2 1 2 2 1 2 1 9.9211 10.502 2 0.00037707 2501 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.82 92.258 4260400000 798540000 922550000 818510000 0 0 0 34881000 26590000 51683000 728410000 3248500 1714000 75828000 53703000 39129000 1542100 0 265910000 152880000 147060000 137340000 0 0 879990 18388 1264 17813 341478;341479;341480;341481;341482;341483;341484;341485;341486;341487;341488;341489;341490;341491;341492;341493;341494;341495;341496;341497;341498;341499;341500;341501;341502;341503;341504;341505 208049;208050;208051;208052;208053;208054;208055;208056;208057;208058;208059 208057 9 SGIGPVTAADITHDGDVEIVK Unmodified 2093.0641 0.064063405 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.391 35.825 3 8.7214E-05 12272 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 75.773 67.486 191770000 6200100 7156700 9041200 0 0 0 4269600 8091500 6237400 11686000 10267000 0 6061600 4800100 7879700 20616000 24328000 21187000 4642200 8225400 4851500 9114500 8489000 8627300 18389 383 17814 341506;341507;341508;341509;341510;341511;341512;341513;341514;341515;341516;341517;341518;341519;341520;341521;341522;341523;341524;341525 208060;208061;208062 208061 3 SGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMR Oxidation (M) 4198.0423 0.042305465 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 1 1 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 4 3 4 2 2 3 4 3 2 1 2 1 4 4 5 39.177 37.541 4;5 1.5672E-22 14908 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 134.98 133.74 3307400000 10193000 13000000 0 1948200 1252600 759840 19832000 0 24410000 313740000 275620000 377960000 25963000 14617000 27802000 587920000 317640000 300620000 14004000 23182000 16515000 405410000 233330000 301650000 18390 383 17815 341526;341527;341528;341529;341530;341531;341532;341533;341534;341535;341536;341537;341538;341539;341540;341541;341542;341543;341544;341545;341546;341547;341548;341549;341550;341551;341552;341553;341554;341555;341556;341557;341558;341559;341560;341561;341562;341563;341564;341565;341566;341567;341568;341569;341570;341571;341572;341573;341574;341575;341576;341577 208063;208064;208065;208066;208067;208068;208069;208070;208071;208072;208073;208074;208075;208076;208077;208078;208079;208080;208081;208082;208083;208084;208085;208086;208087;208088;208089;208090;208091;208092;208093;208094;208095;208096;208097;208098;208099;208100;208101;208102;208103;208104;208105;208106 208081 169 44 SGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMR Unmodified 4182.0474 0.047390843 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 3 3 3 3 5 3 12 10 12 4 4 5 13 17 18 4 4 4 8 10 9 41.872 40.507 3;4;5;6 8.1194E-120 15247 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 338.57 337.5 38307000000 1451500000 1353200000 999410000 108000000 101880000 83441000 959830000 924200000 575200000 7717100000 3177200000 3467300000 953560000 782590000 996550000 2775400000 2008700000 1322900000 1345200000 1605900000 1258900000 1289900000 1461700000 1587700000 18391 383 17815 341578;341579;341580;341581;341582;341583;341584;341585;341586;341587;341588;341589;341590;341591;341592;341593;341594;341595;341596;341597;341598;341599;341600;341601;341602;341603;341604;341605;341606;341607;341608;341609;341610;341611;341612;341613;341614;341615;341616;341617;341618;341619;341620;341621;341622;341623;341624;341625;341626;341627;341628;341629;341630;341631;341632;341633;341634;341635;341636;341637;341638;341639;341640;341641;341642;341643;341644;341645;341646;341647;341648;341649;341650;341651;341652;341653;341654;341655;341656;341657;341658;341659;341660;341661;341662;341663;341664;341665;341666;341667;341668;341669;341670;341671;341672;341673;341674;341675;341676;341677;341678;341679;341680;341681;341682;341683;341684;341685;341686;341687;341688;341689;341690;341691;341692;341693;341694;341695;341696;341697;341698;341699;341700;341701;341702;341703;341704;341705;341706;341707;341708;341709;341710;341711;341712;341713;341714;341715;341716;341717;341718;341719;341720;341721;341722;341723;341724;341725;341726;341727;341728;341729;341730;341731;341732;341733;341734;341735;341736;341737;341738;341739;341740;341741;341742 208107;208108;208109;208110;208111;208112;208113;208114;208115;208116;208117;208118;208119;208120;208121;208122;208123;208124;208125;208126;208127;208128;208129;208130;208131;208132;208133;208134;208135;208136;208137;208138;208139;208140;208141;208142;208143;208144;208145;208146;208147;208148;208149;208150;208151;208152;208153;208154;208155;208156;208157;208158;208159;208160;208161;208162;208163;208164;208165;208166;208167;208168;208169;208170;208171;208172;208173;208174;208175;208176;208177;208178;208179;208180;208181;208182;208183;208184;208185;208186;208187;208188;208189;208190;208191;208192;208193;208194;208195;208196;208197;208198;208199;208200;208201;208202;208203;208204;208205;208206;208207;208208;208209;208210 208163 101 SGIGWTGSGGEQQCFQTTGAQSK Unmodified 2371.0499 0.049886679 77 P02943 lamB Maltoporin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 2 1 2 29.567 28.056 2;3 0.00023989 10308 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 67.11 67.11 79527000 0 0 0 0 0 0 0 0 0 7283800 4782500 4292100 0 2449400 0 3131800 2735800 0 12473000 11668000 11192000 6740700 5024100 7755300 18392 77 17816 341743;341744;341745;341746;341747;341748;341749;341750;341751;341752;341753;341754;341755;341756;341757;341758;341759;341760;341761 208211;208212;208213;208214;208215;208216 208216 6 SGILALLK Unmodified 813.53239 0.53238955 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.313 39.648 2 0.002784 19306 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 97.602 52.629 123180000 8585200 9267000 7641600 0 0 0 5946100 6896500 7762800 0 0 0 10772000 7948700 9489500 0 0 0 14198000 17246000 17426000 0 0 0 18393 1171 17817 341762;341763;341764;341765;341766;341767;341768;341769;341770;341771;341772;341773 208217;208218;208219;208220;208221;208222;208223;208224;208225;208226;208227;208228 208221 12 SGINMSMSDEYYSK Unmodified 1610.6593 0.65925891 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.31 28.954 2 1.1627E-06 13047 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 130.01 129.68 87952000 7039300 6595500 3864800 0 0 0 7208900 8940000 8774900 0 0 0 5853300 7511900 7631800 0 0 0 8250700 8913600 7367300 0 0 0 18394 1421 17818 341774;341775;341776;341777;341778;341779;341780;341781;341782;341783;341784;341785 208229;208230;208231;208232;208233;208234;208235;208236;208237 208235 9 SGISFVDR Unmodified 879.44503 0.4450311 1750 P69828 gatA Galactitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 1 24.092 23.079 2 9.6173E-05 10329 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 161.9 128.97 4119200000 383370000 354780000 302460000 7179200 6066000 5504700 433800000 421880000 444840000 10325000 8596100 8100400 301840000 297050000 270340000 0 0 0 280720000 288710000 283840000 2938100 3446700 3369800 18395 1750 17819 341786;341787;341788;341789;341790;341791;341792;341793;341794;341795;341796;341797;341798;341799;341800;341801;341802;341803;341804;341805;341806;341807;341808;341809 208238;208239;208240;208241;208242;208243;208244;208245;208246;208247;208248;208249;208250 208242 13 SGITFSQELK Unmodified 1108.5764 0.57643921 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.829 26.641 2 0.00032554 11962 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.41 97.881 5778200000 979720000 828090000 691030000 1645300 1972000 1413600 393990000 399010000 367320000 0 0 0 329300000 322760000 272030000 0 0 0 391980000 415430000 382490000 0 0 0 18396 489 17820 341810;341811;341812;341813;341814;341815;341816;341817;341818;341819;341820;341821;341822;341823;341824 208251;208252;208253;208254;208255;208256;208257;208258;208259 208258 9 SGIVAFK Unmodified 720.41703 0.41702544 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.069 21.328 2 0.051776 8350 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 62.714 22.953 797070000 283010000 237710000 244810000 1479100 1191700 1571800 2690300 3912400 4161700 0 0 0 0 0 0 0 0 0 4639100 5551500 6342900 0 0 0 18397 1919 17821 341825;341826;341827;341828;341829;341830;341831;341832;341833;341834;341835;341836 208260;208261;208262 208261 3 SGKSELEAFEVALENVRPTVEVK Unmodified 2530.3279 0.32788266 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.829 46.655 3;4 8.1628E-22 18562 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 166.75 165.77 420030000 0 0 0 19758000 29757000 27852000 0 0 0 26110000 35624000 39322000 0 0 0 51258000 50078000 54399000 0 0 0 29380000 29557000 26934000 18398 67 17822 341837;341838;341839;341840;341841;341842;341843;341844;341845;341846;341847;341848;341849;341850;341851;341852;341853;341854;341855;341856;341857;341858;341859;341860 208263;208264;208265;208266;208267;208268;208269;208270;208271;208272;208273;208274;208275;208276;208277;208278;208279;208280;208281;208282;208283;208284;208285;208286 208275 24 SGLASLHAR Unmodified 910.49846 0.49846366 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 3 2 1 1 1 2 2 2 13.147 13.6 2 1.0067E-05 3246 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 166.68 146.2 20231000000 160060000 130500000 148870000 11477000 13384000 11517000 72187000 69571000 54044000 1752100000 1578700000 1691000000 0 133460000 131410000 4084100000 1775200000 1948100000 213060000 199250000 188930000 1946800000 2060400000 1856900000 18399 458 17823 341861;341862;341863;341864;341865;341866;341867;341868;341869;341870;341871;341872;341873;341874;341875;341876;341877;341878;341879;341880;341881;341882;341883;341884;341885;341886;341887;341888;341889;341890;341891;341892 208287;208288;208289;208290;208291;208292;208293;208294;208295;208296;208297;208298;208299;208300;208301;208302;208303;208304;208305;208306;208307;208308;208309;208310 208297 22 SGLFEQGGYR Unmodified 1112.5251 0.52507234 432 P0A8I1 yqgF Putative Holliday junction resolvase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 24.732 23.783 2 0.00058851 10419 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.267 89.13 54876000 0 6925700 5599800 0 0 0 0 0 7656500 0 0 1048300 3610100 4274100 3371300 0 0 0 8174600 7839400 6376100 0 0 0 18400 432 17824 341893;341894;341895;341896;341897;341898;341899;341900;341901;341902 208311 208311 1 SGLLVMVK Unmodified 845.50446 0.50446024 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 2 2 2 31.831 30.564 1;2 0.0019651 14159 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.45 79.449 3362000000 629290000 633480000 715590000 0 0 0 95853000 76227000 83104000 0 0 0 232520000 255860000 224390000 525630 0 0 136040000 133380000 145740000 0 0 0 18401 877 17825 341903;341904;341905;341906;341907;341908;341909;341910;341911;341912;341913;341914;341915;341916;341917;341918;341919;341920;341921;341922;341923;341924;341925;341926 208312;208313;208314;208315;208316;208317;208318;208319;208320;208321;208322;208323;208324 208319 12 SGLNAENYENFIQTDAAINR Unmodified 2239.0505 0.050538606 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 43.487 41.972 2;3 7.5693E-68 16765 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 374.23 362.07 1929600000 112620000 60788000 44532000 16976000 14239000 15661000 141490000 147390000 126130000 72077000 65239000 58474000 127540000 117750000 116920000 19610000 15041000 12476000 180580000 175450000 160820000 41619000 46573000 39596000 18402 1044 17826 341927;341928;341929;341930;341931;341932;341933;341934;341935;341936;341937;341938;341939;341940;341941;341942;341943;341944;341945;341946;341947;341948;341949;341950;341951;341952;341953;341954;341955;341956;341957;341958;341959;341960;341961;341962;341963;341964;341965;341966;341967;341968;341969;341970;341971;341972 208325;208326;208327;208328;208329;208330;208331;208332;208333;208334;208335;208336;208337;208338;208339;208340;208341;208342;208343;208344;208345;208346;208347;208348;208349;208350;208351 208331 27 SGLPQAALNYIK Unmodified 1273.703 0.7030367 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.629 36.951 2 2.8371E-05 18176 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.37 95.747 2774900000 248380000 212850000 226670000 615920 0 287660 191320000 187090000 195460000 0 0 0 230150000 195230000 236080000 0 0 0 303160000 288350000 259240000 0 0 0 18403 333 17827 341973;341974;341975;341976;341977;341978;341979;341980;341981;341982;341983;341984;341985;341986 208352;208353;208354;208355;208356;208357;208358;208359;208360;208361;208362;208363;208364;208365;208366;208367;208368;208369;208370;208371;208372;208373;208374;208375 208356 24 SGLTLLTNSAEAIHVLAQSEIK Unmodified 2294.2482 0.24817578 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.548 51.278 3 4.3615E-28 20429 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 184.7 182.12 316050000 16555000 18614000 15367000 30673000 32471000 34243000 7457300 8458500 7710500 0 0 0 11218000 9511100 10259000 0 0 0 17500000 15145000 12706000 21819000 23210000 23133000 18404 1933 17828 341987;341988;341989;341990;341991;341992;341993;341994;341995;341996;341997;341998;341999;342000;342001;342002;342003;342004 208376;208377;208378;208379;208380;208381;208382;208383;208384;208385;208386 208377 11 SGLYEDGVR Unmodified 994.47197 0.47197413 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.096 17.824 2 0.00011997 6360 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 133.55 123.08 576720000 50748000 51614000 45719000 0 444540 799970 60688000 55641000 0 0 0 0 49023000 39125000 38615000 0 0 0 66954000 59849000 57501000 0 0 0 18405 1649 17829 342005;342006;342007;342008;342009;342010;342011;342012;342013;342014;342015;342016;342017 208387;208388;208389;208390;208391;208392;208393;208394 208392 8 SGLYEDGVRK Unmodified 1122.5669 0.56693715 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 12.425 13.124 2 0.0087765 3757 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 78.516 35.798 33663000 12057000 9001300 12605000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18406 1649 17830 342018;342019;342020 208395;208396 208396 2 SGLYPPPSLPSGLGTEAAGIVSK Unmodified 2197.163 0.16304917 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 1 2 49.032 47.687 2;3 1.123E-14 23513 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 136.35 134.33 326550000 52613000 47530000 42593000 0 0 0 42480000 40229000 37775000 0 0 0 10746000 10784000 10859000 0 0 0 12834000 9014400 9094800 0 0 0 18407 1316 17831 342021;342022;342023;342024;342025;342026;342027;342028;342029;342030;342031;342032;342033;342034;342035;342036;342037;342038;342039;342040;342041;342042;342043 208397;208398;208399;208400;208401;208402;208403;208404;208405 208399 9 SGMHQDVPK Unmodified 997.46511 0.46511462 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.527 11.342 2 0.000567 2672 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.93 96.234 731310000 65789000 69166000 60652000 0 0 0 54436000 57542000 50267000 0 0 0 80093000 69441000 53071000 0 0 0 57667000 54045000 59138000 0 0 0 18408 1222 17832 342044;342045;342046;342047;342048;342049;342050;342051;342052;342053;342054;342055 208406;208407;208408 208406 3 SGMHQDVPKEDVIIESVTVSE Oxidation (M) 2314.0999 0.099856564 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 1 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 35.124 33.591 3 0.0031908 16534 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 54.225 50.273 90592000 8349000 0 0 0 0 0 13782000 13255000 14502000 0 0 0 9053800 11436000 9543000 0 0 0 10670000 0 0 0 0 0 18409 1222 17833 342056;342057;342058;342059;342060;342061;342062;342063 208409 208409 515 1 SGMHQDVPKEDVIIESVTVSE Unmodified 2298.1049 0.10494194 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 1 1 3 3 3 1 3 2 3 3 3 3 37.28 35.57 2;3 8.6978E-15 17032 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 144.88 142.31 3503300000 300130000 253700000 243840000 2425000 2768100 2525800 330780000 342580000 311710000 2801200 0 0 248270000 238380000 298560000 0 0 0 325780000 298050000 300980000 0 0 0 18410 1222 17833 342064;342065;342066;342067;342068;342069;342070;342071;342072;342073;342074;342075;342076;342077;342078;342079;342080;342081;342082;342083;342084;342085;342086;342087;342088;342089;342090;342091;342092;342093;342094;342095;342096;342097;342098;342099;342100;342101 208410;208411;208412;208413;208414;208415;208416;208417;208418;208419;208420;208421;208422;208423;208424;208425;208426;208427;208428;208429;208430;208431;208432;208433;208434;208435;208436;208437;208438;208439;208440 208420 31 SGMLAVK Unmodified 704.3891 0.38909613 513 P0A9E5 fnr Fumarate and nitrate reduction regulatory protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.011 16.375 2 0.016885 4593 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 80.294 32.052 204440000 27193000 28280000 19453000 0 1616000 0 16913000 20426000 0 3899100 4593800 6328000 0 0 0 12931000 8019600 9224700 23819000 0 0 11109000 10639000 0 18411 513 17834 342102;342103;342104;342105;342106;342107;342108;342109;342110;342111;342112;342113;342114;342115;342116 208441;208442;208443;208444;208445;208446;208447 208441 7 SGMPVQISSGSR Unmodified 1204.587 0.58702067 1511 P39176 erfK Probable L,D-transpeptidase ErfK/SrfK yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 20.672 21.016 2 0.033612 8533 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 48.561 38.296 73949000 13049000 13749000 11222000 0 0 0 8982300 12455000 10146000 0 0 0 1661100 0 0 0 0 0 2683400 0 0 0 0 0 18412 1511 17835 342117;342118;342119;342120;342121;342122;342123;342124 208448 208448 1 SGMSEFDINIAYLTATGHR Unmodified 2081.984 0.98403894 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.567 47.236 2;3 9.2986E-81 22873 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 318.7 301.58 1447600000 129140000 123640000 129160000 0 0 0 140130000 141110000 128460000 0 0 0 99067000 82606000 85684000 0 0 0 129170000 134330000 125140000 0 0 0 18413 1170 17836 342125;342126;342127;342128;342129;342130;342131;342132;342133;342134;342135;342136;342137;342138;342139;342140;342141;342142;342143;342144;342145;342146;342147;342148 208449;208450;208451;208452;208453;208454;208455;208456;208457;208458;208459;208460;208461;208462;208463;208464;208465;208466;208467;208468;208469;208470;208471 208466 23 SGNANTDYNAAIALVQDK Unmodified 1863.8963 0.8962698 1583 P45955 ybgF Uncharacterized protein YbgF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 37.948 36.274 2;3 1.4312E-17 17990 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.03 217.55 643800000 65543000 69655000 58875000 0 0 550570 44679000 43182000 42276000 0 0 0 46209000 43500000 43450000 0 0 0 63428000 63768000 58679000 0 0 0 18414 1583 17837 342149;342150;342151;342152;342153;342154;342155;342156;342157;342158;342159;342160;342161;342162;342163;342164;342165;342166;342167;342168;342169;342170;342171;342172;342173 208472;208473;208474;208475;208476;208477;208478;208479;208480;208481;208482;208483;208484;208485;208486;208487 208472 15 SGNIDDFCR Unmodified 1082.4451 0.44510746 1645 P62517 mdoH Glucans biosynthesis glucosyltransferase H yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.052 19.568 2 0.00037215 7452 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 111.95 107.93 84515000 4512800 0 3601400 0 0 0 7470600 9857700 7942100 0 0 1217300 8168800 5163500 5785300 0 0 0 9281200 11518000 9995800 0 0 0 18415 1645 17838 342174;342175;342176;342177;342178;342179;342180;342181;342182;342183;342184;342185 208488;208489;208490;208491;208492 208489 5 SGNPLDSVTQMGAQVSHGQLETILNYIDIGK Unmodified 3284.6347 0.63470573 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 55.211 53.672 3 6.77E-43 26764 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 210.93 207.07 490890000 196960000 189760000 0 0 0 0 32482000 25485000 27843000 0 0 0 0 0 0 0 0 0 10787000 7581600 0 0 0 0 18416 1486 17839 342186;342187;342188;342189;342190;342191;342192 208493;208494 208493 2 SGNPLDSVTQMGAQVSHGQLETILNYIDIGKK Unmodified 3412.7297 0.72966874 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 54.585 53.13 4 4.4859E-25 26362 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.07 165.45 270900000 91075000 71456000 91984000 0 0 0 16381000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18417 1486 17840 342193;342194;342195;342196 208495;208496;208497 208495 3 SGPCVEGGPDNVAQQFYDYR Unmodified 2257.9698 0.96984544 1776 P75818 ybjP Uncharacterized lipoprotein YbjP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 1 2 1 1 1 40.712 38.845 2;3 4.5569E-18 18770 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 223.39 218.11 91033000 14984000 15571000 14511000 4082900 3077900 3602200 0 6522000 2968300 6267600 4676700 6694300 0 0 0 0 0 0 2601700 2066000 3407300 0 0 0 18418 1776 17841 342197;342198;342199;342200;342201;342202;342203;342204;342205;342206;342207;342208;342209;342210;342211;342212;342213;342214;342215;342216;342217;342218 208498;208499;208500;208501 208501 4 SGPGDEFYLQAVQELVDSALAHR Unmodified 2501.2187 0.21866657 764 P0AD12 yeeZ Protein YeeZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.658 54.214 3 3.2284E-44 27052 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187.59 184.71 992640000 127720000 99529000 112160000 0 0 1059300 95604000 0 91072000 0 0 0 74852000 70180000 75274000 0 0 0 77724000 88870000 78600000 0 0 0 18419 764 17842 342219;342220;342221;342222;342223;342224;342225;342226;342227;342228;342229;342230 208502;208503;208504;208505;208506;208507;208508;208509;208510;208511;208512 208507 11 SGQAETLADHEGR Unmodified 1369.6222 0.6222202 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 2 2 2 1 2 2 2 2 1 1 1 2 2 1 1 2 2 2 1 11.573 12.271 2;3 2.5125E-11 3230 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 168.05 156.56 1307000000 39945000 29315000 38428000 7384200 4469500 0 127770000 118530000 131250000 11006000 5294900 5233600 55285000 113150000 109950000 0 3005900 3946500 181120000 154770000 163950000 0 3182600 0 18420 294 17843 342231;342232;342233;342234;342235;342236;342237;342238;342239;342240;342241;342242;342243;342244;342245;342246;342247;342248;342249;342250;342251;342252;342253;342254;342255;342256;342257;342258;342259;342260;342261;342262 208513;208514;208515;208516;208517;208518;208519;208520;208521;208522;208523;208524;208525;208526;208527 208522 13 SGQIMWK Unmodified 848.42146 0.42145889 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 20.861 20.616 2 0.017717 6882 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 79.454 73.067 12207000 0 0 0 846570 0 0 0 0 0 2968100 2769000 2502700 0 0 0 0 0 0 0 0 0 1578500 1541800 0 18421 1940 17844 342263;342264;342265;342266;342267;342268 208528;208529;208530;208531 208528 4 SGQSVIFNESVDHGPFPLAQLK Unmodified 2369.2016 0.20155994 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 45.496 43.998 2;3 3.1884E-35 21852 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 278.84 267.36 1987600000 65104000 61932000 3149900 10584000 11217000 11053000 165340000 173600000 170610000 187270000 172560000 141870000 119810000 107670000 85205000 16128000 9334400 11899000 128180000 135730000 133470000 18098000 23446000 24336000 18422 1944 17845 342269;342270;342271;342272;342273;342274;342275;342276;342277;342278;342279;342280;342281;342282;342283;342284;342285;342286;342287;342288;342289;342290;342291;342292;342293;342294;342295;342296;342297;342298;342299;342300;342301;342302;342303;342304;342305;342306 208532;208533;208534;208535;208536;208537;208538;208539;208540;208541;208542;208543;208544;208545;208546;208547;208548;208549;208550;208551;208552;208553;208554;208555;208556 208542 25 SGQSVIFNESVDHGPFPLAQLKK Unmodified 2497.2965 0.29652296 1944 P77804 ydgA Protein YdgA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 39.697 37.21 3;4 1.2039E-10 14652 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 130.87 122.87 128520000 0 0 0 0 0 0 0 0 0 44678000 33515000 41528000 0 0 0 0 0 0 0 0 0 0 0 8803500 18423 1944 17846 342307;342308;342309;342310;342311;342312;342313 208557;208558;208559;208560;208561;208562 208562 5 SGRDPISQAAFALPLPAK Unmodified 1838.005 0.0050323835 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.099 40.389 3 1.3594E-06 14174 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 92.633 89.013 228880000 6825900 5063400 4427200 7025600 6298400 5431800 11313000 14189000 11481000 17033000 16624000 17730000 8090200 6679700 6410600 8280300 0 5145900 16879000 13642000 11655000 11330000 8438400 8884600 18424 819 17847 342314;342315;342316;342317;342318;342319;342320;342321;342322;342323;342324;342325;342326;342327;342328;342329;342330;342331;342332;342333;342334;342335;342336 208563;208564;208565;208566;208567;208568;208569;208570;208571;208572;208573;208574;208575;208576;208577;208578;208579;208580 208575 11 SGSAAQGFQLLDEAELK Unmodified 1762.8737 0.87374344 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.493 42.884 2 7.127E-14 20942 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 165.51 159.53 538730000 32595000 34391000 32497000 0 0 0 38512000 35105000 33609000 0 0 0 46941000 44624000 39900000 0 0 0 63913000 59269000 52191000 7257900 9902600 8024000 18425 1445 17848 342337;342338;342339;342340;342341;342342;342343;342344;342345;342346;342347;342348;342349;342350;342351 208581;208582;208583;208584;208585;208586;208587;208588;208589;208590;208591;208592;208593 208587 11 SGSAYDR Unmodified 754.32458 0.32458162 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 7.3772 8.1097 2 0.0019661 1739 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.65 111.63 17008000 6587500 5469400 4951400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18426 48 17849 342352;342353;342354 208594 208594 1 SGSGKPNK Unmodified 773.40317 0.40316629 350 P0A7J7 rplK 50S ribosomal protein L11 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.6635 6.2271 2 0.00089113 352 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.66 114.82 224640000 17106000 19335000 13006000 0 0 0 192360 558250 385950 6223900 7138900 6957800 8435300 5851900 0 14658000 6527200 5322800 26061000 28061000 33039000 9863700 8553900 7365700 18427 350 17850 342355;342356;342357;342358;342359;342360;342361;342362;342363;342364;342365;342366;342367;342368;342369;342370;342371;342372;342373;342374;342375 208595;208596;208597;208598;208599;208600;208601;208602;208603;208604;208605;208606 208601 12 SGSGTLTVSNTTLTQK Unmodified 1593.821 0.82097959 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.862 21.891 2 3.1924E-24 9060 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 219.92 205.28 266750000 14300000 13581000 0 0 0 0 5009000 3452800 5017500 0 0 0 58736000 49625000 57966000 0 0 0 19752000 20918000 18391000 0 0 0 18428 1513 17851 342376;342377;342378;342379;342380;342381;342382;342383;342384;342385;342386 208607;208608;208609;208610;208611;208612 208607 6 SGSPLVIGLGMGENFIASDQLALLPVTR Unmodified 2854.5263 0.5262649 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.757 54.3 3 6.1136E-17 25726 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 155.73 149.51 961800000 98341000 1331500 89711000 0 0 0 81337000 0 78143000 0 0 0 77536000 99305000 83458000 0 0 0 113500000 119160000 119980000 0 0 0 18429 1137 17852 342387;342388;342389;342390;342391;342392;342393;342394;342395;342396;342397 208613;208614;208615;208616;208617;208618;208619;208620;208621;208622 208622 10 SGSQLTIPQQLILPDTVR Unmodified 1965.0895 0.089490294 1511 P39176 erfK Probable L,D-transpeptidase ErfK/SrfK yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 50.057 48.596 2 1.9681E-06 23993 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.592 86.032 51780000 10788000 7291300 8161100 0 0 0 7729900 7528200 8476100 0 0 0 1806400 0 0 0 0 0 0 0 0 0 0 0 18430 1511 17853 342398;342399;342400;342401;342402;342403;342404 208623 208623 1 SGSTDQAVR Unmodified 919.43592 0.43592298 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.9902 7.6563 2 4.973E-06 1931 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 173.68 162.61 1180800000 0 0 0 9708200 8978400 6092400 211160000 192670000 213130000 79973000 82898000 72378000 63965000 48851000 49435000 0 12766000 15324000 37194000 34880000 30966000 0 10435000 0 18431 664 17854 342405;342406;342407;342408;342409;342410;342411;342412;342413;342414;342415;342416;342417;342418;342419;342420;342421;342422;342423 208624;208625;208626;208627;208628;208629;208630;208631;208632;208633;208634;208635;208636;208637;208638;208639;208640 208628 17 SGTAMLVDDYGHHPTEVDATIK Unmodified 2356.1005 0.10052527 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 27.406 26.349 3;4 4.9782E-28 11844 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.82 150.72 882010000 83399000 90110000 87753000 0 0 0 62758000 61132000 69910000 0 0 0 65615000 62792000 52941000 0 1716300 1781300 79177000 81791000 81137000 0 0 0 18432 1145 17855 342424;342425;342426;342427;342428;342429;342430;342431;342432;342433;342434;342435;342436;342437;342438;342439;342440;342441;342442;342443;342444;342445;342446;342447;342448;342449 208641;208642;208643;208644;208645;208646;208647;208648;208649;208650;208651;208652;208653;208654;208655 208652 15 SGTEPLIR Unmodified 871.47633 0.47633123 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.133 16.949 2 0.0020298 5938 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.91 73.487 1140300000 78903000 78843000 88845000 0 0 0 102740000 111400000 104910000 0 0 0 94591000 82768000 79843000 0 0 0 105000000 113750000 98721000 0 0 0 18433 1360 17856 342450;342451;342452;342453;342454;342455;342456;342457;342458;342459;342460;342461 208656;208657;208658;208659;208660;208661;208662;208663;208664 208663 9 SGTGSVDYAK Unmodified 983.45599 0.45598972 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.536 12.382 2 5.0462E-05 3257 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 135.79 124.92 2679500000 602070000 444740000 427580000 622400 0 0 84166000 85827000 80316000 0 0 0 206700000 197970000 205250000 0 0 0 118930000 108060000 117260000 0 0 0 18434 877 17857 342462;342463;342464;342465;342466;342467;342468;342469;342470;342471;342472;342473;342474 208665;208666;208667;208668;208669;208670;208671;208672;208673;208674;208675 208666 11 SGTIAFSGAYHGR Unmodified 1322.6367 0.63674805 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 2 1 1 1 1 1 2 2 17.631 18.247 2;3 3.694E-18 6647 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 223.08 215.86 367630000 72327000 77038000 52445000 795090 0 763230 39710000 50000000 26616000 1744600 0 0 5772000 0 3811700 0 0 0 10756000 14921000 10934000 0 0 0 18435 1194 17858 342475;342476;342477;342478;342479;342480;342481;342482;342483;342484;342485;342486;342487;342488;342489;342490;342491;342492;342493;342494;342495 208676;208677;208678;208679;208680;208681;208682 208677 6 SGTLNIAGNHFDFTK Unmodified 1620.7896 0.78961988 591 P0AAF6 artP Arginine transport ATP-binding protein ArtP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.861 31.4 3 0.0013293 10771 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 56.514 54.427 213500000 20926000 21058000 23607000 5685100 5642300 6238100 12521000 9086300 9532600 3840900 3438400 4397500 9562100 12521000 9411100 1515600 834450 1248900 16707000 11721000 12175000 3529300 4586400 3713700 18436 591 17859 342496;342497;342498;342499;342500;342501;342502;342503;342504;342505;342506;342507;342508;342509;342510;342511;342512;342513;342514;342515;342516;342517;342518;342519 208683;208684;208685;208686;208687;208688;208689;208690;208691;208692;208693;208694;208695;208696;208697;208698;208699 208695 17 SGTLPVHQIVGMGEAYR Unmodified 1813.9145 0.91450282 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 32.615 31.075 2;3 1.7763E-24 14657 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 241.76 229.85 3123600000 393160000 370510000 356970000 7504300 7728900 8774900 199110000 194930000 193260000 5570700 4239800 8409700 171290000 186520000 200380000 0 0 0 247690000 282610000 258870000 6772300 10209000 9074800 18437 228 17860 342520;342521;342522;342523;342524;342525;342526;342527;342528;342529;342530;342531;342532;342533;342534;342535;342536;342537;342538;342539;342540;342541;342542;342543;342544;342545;342546;342547;342548;342549;342550;342551;342552;342553;342554;342555;342556;342557;342558 208700;208701;208702;208703;208704;208705;208706;208707;208708;208709;208710;208711;208712;208713;208714;208715;208716;208717;208718;208719;208720;208721;208722;208723;208724;208725;208726;208727;208728;208729 208710 30 SGTLTYEAVK Unmodified 1067.5499 0.5498901 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.493 18.934 2 3.848E-05 7107 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.2 128.71 5706400000 662850000 567570000 553230000 4139700 3538200 3354400 288910000 311950000 252400000 3619600 3052900 2855000 308720000 273620000 232020000 0 0 0 743520000 753340000 734830000 0 1213100 1710300 18438 1013 17861 342559;342560;342561;342562;342563;342564;342565;342566;342567;342568;342569;342570;342571;342572;342573;342574;342575;342576;342577;342578 208730;208731;208732;208733;208734;208735;208736;208737;208738;208739;208740 208732 11 SGTRKEELLTTQEELQK Unmodified 1989.0378 0.037848654 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 16.143 16.597 3 2.2884E-06 4200 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 90.561 85.43 82319000 0 0 0 4373800 5394200 4843900 0 0 0 39747000 26436000 0 0 0 0 1523200 0 0 0 0 0 0 0 0 18439 982 17862 342579;342580;342581;342582;342583;342584;342585 208741;208742;208743;208744;208745 208744 5 SGTVLLVLSDR Unmodified 1158.6608 0.66083754 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.973 37.297 2 9.7393E-08 18008 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 173.37 168.02 472760000 69985000 65142000 63412000 0 0 1150600 50368000 42784000 44508000 0 0 0 21876000 20404000 19359000 0 0 0 26799000 25220000 21754000 0 0 0 18440 218 17863 342586;342587;342588;342589;342590;342591;342592;342593;342594;342595;342596;342597;342598 208746;208747;208748;208749;208750;208751;208752;208753 208752 4 SGVGFHILK Unmodified 956.54435 0.54435122 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 22.436 22.025 2 0.0032532 9510 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 82.241 73.418 537150000 67313000 69091000 54181000 0 0 0 0 0 0 0 0 0 50697000 46821000 43303000 0 0 0 67044000 70147000 68554000 0 0 0 18441 688 17864 342599;342600;342601;342602;342603;342604;342605;342606;342607 208754;208755;208756;208757 208754 4 SGVLTGLPDAYGR Unmodified 1304.6725 0.67246486 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.7 34.147 2 9.0867E-06 15601 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 140.3 121.52 25646000000 1005000000 1111000000 978100000 12187000 10612000 9873200 3414800000 3303100000 3423600000 25839000 19678000 18507000 2376500000 2265200000 2263200000 15270000 11500000 9535600 1726200000 1785900000 1812900000 14852000 16699000 16112000 18442 212 17865 342608;342609;342610;342611;342612;342613;342614;342615;342616;342617;342618;342619;342620;342621;342622;342623;342624;342625;342626;342627;342628;342629;342630;342631 208758;208759;208760;208761;208762;208763;208764;208765;208766;208767;208768;208769;208770;208771;208772;208773;208774;208775;208776;208777;208778;208779;208780;208781;208782;208783;208784;208785;208786 208785 29 SGVLTGLPDGYGR Unmodified 1290.6568 0.65681479 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.461 32.963 2 0.049233 15170 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 48.004 22.959 147440000 12693000 0 7084600 0 0 0 13555000 12214000 16727000 0 0 0 18430000 13201000 13782000 0 0 0 13046000 12660000 13166000 0 0 879540 18443 1559 17866 342632;342633;342634;342635;342636;342637;342638;342639;342640;342641;342642;342643 208787 208787 0 SGVPNVTAPVYSHLIYDVIPDGDK Unmodified 2555.2908 0.29076888 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.498 49.108 3 1.7315E-06 24037 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.833 90.326 453960000 40190000 33928000 31817000 0 0 0 36517000 34384000 39576000 0 0 0 33425000 29772000 31275000 0 0 0 48769000 48487000 45817000 0 0 0 18444 248 17867 342644;342645;342646;342647;342648;342649;342650;342651;342652;342653;342654;342655 208788;208789 208788 2 SGVSHELVLNAIADCQSA Unmodified 1869.8891 0.88907593 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.476 36.802 2 3.0139E-22 18304 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 188.68 187.69 203300000 20412000 14933000 15894000 0 0 0 18375000 17605000 18328000 0 0 0 14292000 12175000 13950000 0 0 0 21539000 20436000 15356000 0 0 0 18445 164 17868 342656;342657;342658;342659;342660;342661;342662;342663;342664;342665;342666;342667 208790;208791;208792;208793;208794;208795;208796;208797;208798;208799 208790 10 SGVSLEGINYLDGGISDAIPVK Unmodified 2203.1372 0.13722835 1538 P39407 yjjU Uncharacterized protein YjjU yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.234 51.757 2 0.00011865 25631 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 112.03 99.471 54602000 6166400 3504000 4327000 0 0 0 8101800 8390800 6812700 3660200 3301400 4311800 1931200 0 0 0 0 0 2191600 1902800 0 0 0 0 18446 1538 17869 342668;342669;342670;342671;342672;342673;342674;342675;342676;342677;342678;342679 208800 208800 1 SGWDNVPAPAEPTYR Unmodified 1658.7689 0.76888444 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.384 31.711 2 1.3863E-06 15085 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 142.1 138.78 172160000 15595000 12250000 10942000 2366300 1860000 2419700 9658100 8152400 9554000 9884100 10516000 12244000 5924800 5786300 6634600 0 0 0 11792000 11532000 10235000 4985100 5054900 4772000 18447 78 17870 342680;342681;342682;342683;342684;342685;342686;342687;342688;342689;342690;342691;342692;342693;342694;342695;342696;342697;342698;342699;342700 208801;208802;208803;208804;208805;208806;208807;208808;208809;208810;208811;208812;208813;208814;208815 208810 15 SHADAELK Unmodified 869.4243 0.42429566 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 8.612 9.4079 2 0.0023127 2111 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 101.54 91.236 95772000 20689000 11630000 23262000 0 0 0 0 0 0 0 0 0 3700100 4927300 0 0 0 0 9240300 10883000 11440000 0 0 0 18448 1193 17871 342701;342702;342703;342704;342705;342706;342707;342708;342709 208816;208817;208818;208819;208820;208821;208822;208823;208824 208819 8 SHALNATK Unmodified 840.44537 0.44536545 356 P0A7M2 rpmB 50S ribosomal protein L28 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.7213 8.3038 2 0.00017529 1852 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 154.28 130.31 2430100000 448060000 388110000 366170000 24391000 20409000 17718000 181900000 0 1526000 43582000 28956000 34594000 0 0 145540000 45355000 23373000 21042000 0 246310000 259320000 49413000 39195000 45127000 18449 356 17872 342710;342711;342712;342713;342714;342715;342716;342717;342718;342719;342720;342721;342722;342723;342724;342725;342726;342727;342728;342729;342730;342731 208825;208826;208827;208828;208829;208830;208831;208832;208833;208834;208835;208836;208837;208838;208839;208840;208841;208842 208830 16 SHALNATKR Unmodified 996.54648 0.54647648 356 P0A7M2 rpmB 50S ribosomal protein L28 yes yes 0 0 1 By MS/MS By matching 1 1 4.7531 5.8818 2 0.10699 879 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 43.808 32.935 3656300 0 0 0 2284000 1372400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18450 356 17873 342732;342733 208843 208843 1 SHATAQEEILK Unmodified 1225.6303 0.63026569 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 4 4 4 2 2 2 2 2 2 13.161 13.624 2;3 1.2326E-34 3171 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 280.55 244 13502000000 175500000 152810000 165580000 0 0 3955500 79523000 79345000 78841000 37370000 35163000 28384000 176780000 191460000 175170000 4336100000 3470300000 3856100000 74751000 106160000 194870000 23832000 31232000 28275000 18451 36 17874 342734;342735;342736;342737;342738;342739;342740;342741;342742;342743;342744;342745;342746;342747;342748;342749;342750;342751;342752;342753;342754;342755;342756;342757;342758;342759;342760;342761;342762;342763;342764;342765;342766;342767;342768;342769;342770;342771;342772;342773;342774;342775;342776;342777;342778;342779;342780;342781;342782 208844;208845;208846;208847;208848;208849;208850;208851;208852;208853;208854;208855;208856;208857;208858;208859;208860;208861;208862;208863;208864;208865;208866;208867;208868;208869;208870;208871;208872;208873;208874 208847 30 SHATVITR Unmodified 883.48756 0.48756462 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.703 11.342 2 0.0087277 2512 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 81.215 60.867 212270000 20336000 24058000 20951000 0 0 0 25751000 20975000 22812000 0 5499000 0 9935300 10945000 11845000 5433700 1600200 0 18412000 13721000 0 0 0 0 18452 1334 17875 342783;342784;342785;342786;342787;342788;342789;342790;342791;342792;342793;342794;342795;342796 208875;208876;208877;208878;208879 208879 5 SHDALTAVTSLSVDK Unmodified 1542.789 0.78895118 359 P0A7N4 rpmF 50S ribosomal protein L32 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 30.085 28.716 2;3 5.5734E-21 13789 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 256.47 241.97 4889300000 702080000 634880000 580590000 15912000 12470000 14329000 228550000 207720000 190210000 31280000 26466000 28703000 261620000 259380000 260880000 32776000 26901000 33099000 419790000 435180000 393870000 31570000 27921000 33102000 18453 359 17876 342797;342798;342799;342800;342801;342802;342803;342804;342805;342806;342807;342808;342809;342810;342811;342812;342813;342814;342815;342816;342817;342818;342819;342820;342821;342822;342823;342824;342825;342826;342827;342828;342829;342830;342831;342832;342833;342834;342835;342836;342837;342838;342839;342840;342841;342842;342843;342844 208880;208881;208882;208883;208884;208885;208886;208887;208888;208889;208890;208891;208892;208893;208894;208895;208896;208897;208898;208899;208900;208901;208902;208903;208904;208905;208906;208907;208908;208909;208910;208911;208912;208913;208914;208915;208916;208917;208918;208919;208920;208921;208922;208923;208924;208925 208892 46 SHDALTAVTSLSVDKTSGEK Unmodified 2045.0277 0.027677899 359 P0A7N4 rpmF 50S ribosomal protein L32 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.018 23.966 3 2.577E-07 8324 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 105.79 97.634 83316000 0 0 0 4392300 6107900 6851100 3588800 0 0 7097700 6700800 6030200 0 0 0 6018900 5042300 4637300 0 0 0 8770400 9984900 8093400 18454 359 17877 342845;342846;342847;342848;342849;342850;342851;342852;342853;342854;342855;342856;342857 208926;208927;208928;208929;208930;208931;208932;208933;208934 208930 9 SHEASIIGNTCLYGATGGR Unmodified 1962.9218 0.92177304 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 3 1 2 2 2 2 2 27.391 26.22 2;3 2.8915E-37 11956 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 304.42 297.06 655750000 118760000 117410000 103490000 0 0 0 53832000 52193000 54194000 0 0 0 21063000 20908000 21674000 0 0 0 32583000 31668000 27973000 0 0 0 18455 218 17878 342858;342859;342860;342861;342862;342863;342864;342865;342866;342867;342868;342869;342870;342871;342872;342873;342874;342875;342876;342877;342878;342879;342880;342881 208935;208936;208937;208938;208939;208940;208941;208942;208943;208944;208945;208946;208947 208939 10 SHGFDHLYGSEELK Unmodified 1617.7423 0.74233534 1536 P39401 mdoB Phosphoglycerol transferase I yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.685 20.931 3 0.0041836 8351 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 59.248 51.957 131430000 6080700 6269300 5840900 0 0 0 13781000 8326200 10664000 0 2369400 2612000 8158700 8324300 10036000 0 0 0 13498000 16679000 14329000 0 1734300 2730800 18456 1536 17879 342882;342883;342884;342885;342886;342887;342888;342889;342890;342891;342892;342893;342894;342895;342896;342897 208948;208949 208948 2 SHHEDADGVALTFELTQSEETKK Unmodified 2571.2089 0.20888974 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 1 1 27.66 26.497 3;4 1.3263E-06 11563 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 98.065 96.32 402280000 24533000 28816000 19577000 0 0 0 68540000 49707000 48017000 0 0 0 26530000 17174000 20205000 0 0 0 45119000 27666000 26398000 0 0 0 18457 1510 17880 342898;342899;342900;342901;342902;342903;342904;342905;342906;342907;342908;342909;342910;342911;342912;342913;342914;342915;342916;342917;342918 208950;208951;208952;208953;208954;208955;208956;208957;208958;208959;208960 208959 10 SHHHEGCCK Unmodified 1150.4396 0.43964492 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 1 2 5.6339 6.1437 2;3 0.00078923 1266 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 87.639 87.639 48134000 4761600 3071400 3585700 208140 179850 252180 0 0 0 6539300 6656300 5317300 479180 382840 271390 644160 604380 501600 4123700 3187700 2900500 1828600 771360 1866900 18458 1691 17881 342919;342920;342921;342922;342923;342924;342925;342926;342927;342928;342929;342930;342931;342932;342933;342934;342935;342936;342937;342938;342939;342940;342941;342942;342943;342944;342945;342946;342947;342948;342949;342950 208961;208962;208963;208964;208965;208966;208967;208968;208969;208970;208971;208972;208973 208961 13 SHHISVYEIVGEQGLLHEK Unmodified 2174.112 0.11201665 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 3 3 3 30.986 29.847 2;3;4 2.1135E-17 13970 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 181.71 180.71 1220800000 455830000 406350000 358670000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18459 1610 17882 342951;342952;342953;342954;342955;342956;342957;342958;342959 208974;208975;208976;208977;208978;208979;208980;208981 208976 8 SHHNVGGLPK Unmodified 1044.5465 0.54647648 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.361 11.231 2 1.9775E-06 2556 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.1 150.19 2044400000 173070000 104880000 105960000 1721900 1436300 2456600 168600000 178290000 177900000 0 0 0 186430000 189030000 186380000 0 0 0 203100000 185810000 179330000 0 0 0 18460 86 17883 342960;342961;342962;342963;342964;342965;342966;342967;342968;342969;342970;342971;342972;342973;342974 208982;208983;208984;208985;208986;208987;208988;208989;208990;208991 208989 10 SHICVHTYPESHPEGGLCTFR Unmodified 2483.111 0.11104715 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 19.857 20.439 4 0.10037 7959 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 27.96 26.927 24936000 0 0 0 0 0 0 0 0 0 0 0 0 2856200 3443300 0 0 0 0 5739200 5095700 7801800 0 0 0 18461 340 17884 342975;342976;342977;342978;342979 208992;208993 208993 2 SHIQFYDGIK Unmodified 1206.6033 0.60332266 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.382 21.937 3 0.0011712 9399 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 64.103 53.795 1509100000 121670000 89351000 82326000 0 0 0 115840000 96706000 131610000 0 0 0 98832000 105310000 91225000 662730 1106300 669710 178340000 215840000 179650000 0 0 0 18462 29 17885 342980;342981;342982;342983;342984;342985;342986;342987;342988;342989;342990;342991;342992;342993;342994 208994;208995;208996;208997;208998;208999;209000 208995 2 SHIWLLVNDDQR Unmodified 1494.7579 0.75792582 786 P0ADF8 ilvN Acetolactate synthase isozyme 1 small subunit yes yes 0 0 0 By MS/MS By MS/MS 1 1 34.213 32.981 3 1.181E-05 15595 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 99.215 94.324 63777000 0 33359000 30418000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18463 786 17886 342995;342996 209001;209002 209002 1 SHLAELVASAK Unmodified 1124.619 0.61897272 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 3 2 2 1 1 2 2 3 2 2 2 2 1 19.386 19.83 2;3 3.5823E-10 7484 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 217.66 212.18 3414000000 370860000 300580000 279140000 2866300 2865500 2637000 316080000 302880000 242600000 1934200 2085000 3013100 223100000 224450000 206280000 0 0 0 269910000 322550000 339170000 0 0 1034900 18464 183 17887 342997;342998;342999;343000;343001;343002;343003;343004;343005;343006;343007;343008;343009;343010;343011;343012;343013;343014;343015;343016;343017;343018;343019;343020;343021;343022;343023;343024;343025;343026;343027;343028;343029;343030;343031;343032;343033 209003;209004;209005;209006;209007;209008;209009;209010;209011;209012;209013;209014;209015;209016;209017;209018;209019;209020;209021;209022;209023;209024;209025;209026;209027;209028 209020 19 SHLDEVIAR Unmodified 1038.5458 0.54580778 1670 P64455 ydcY Uncharacterized protein YdcY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.725 16.29 2 4.0212E-11 5537 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 205.77 194.7 1784000000 193760000 186520000 186720000 2774300 2581700 2730500 163510000 169170000 155300000 2381300 2510700 3702600 125070000 108060000 110310000 3575700 1962000 2127300 118840000 115330000 123160000 0 2125300 1740300 18465 1670 17888 343034;343035;343036;343037;343038;343039;343040;343041;343042;343043;343044;343045;343046;343047;343048;343049;343050;343051;343052;343053;343054;343055;343056 209029;209030;209031;209032;209033;209034;209035;209036;209037;209038;209039;209040;209041;209042 209035 14 SHLDEVIAR Acetyl (Protein N-term) 1080.5564 0.55637247 1670 P64455 ydcY Uncharacterized protein YdcY yes yes 1 0 0 By matching By MS/MS By MS/MS 1 1 1 26.138 25.267 2 0.00066673 11311 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 96.311 86.918 15631000 5459100 5915000 4256700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18466 1670 17888 343057;343058;343059 209043;209044 209043 2 SHLKDPTTQYYTGEYPK Unmodified 2026.9636 0.96362108 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 1 1 1 18.784 19.206 2;3 1.0308E-13 7193 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 190.86 188.07 307380000 70935000 80197000 61431000 0 0 0 33012000 26590000 26512000 654820 0 0 0 3109000 0 0 0 0 0 0 4937700 0 0 0 18467 995 17889 343060;343061;343062;343063;343064;343065;343066;343067;343068;343069;343070;343071;343072 209045;209046;209047;209048;209049;209050;209051;209052 209050 8 SHLLHAACAELSQR Unmodified 1591.7889 0.78890837 1760 P69931 hda DnaA regulatory inactivator Hda yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 15.98 16.78 2 0.00066595 5892 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.397 59.546 16176000 3873700 5111700 2946300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2144800 2099800 0 0 0 18468 1760 17890 343073;343074;343075;343076;343077 209053 209053 1 SHLMEELKK Unmodified 1113.5852 0.58522975 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 12.536 13.181 2;3 4.2919E-05 3872 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.08 143.72 785920000 45086000 46147000 52871000 5766500 6125200 5002600 70690000 64042000 62761000 20067000 10470000 13092000 49426000 44814000 41175000 5193500 6103000 7895200 70667000 61191000 65734000 11529000 10104000 9966100 18469 1052 17891 343078;343079;343080;343081;343082;343083;343084;343085;343086;343087;343088;343089;343090;343091;343092;343093;343094;343095;343096;343097;343098;343099;343100;343101;343102;343103;343104;343105;343106;343107;343108;343109;343110;343111;343112;343113;343114;343115;343116;343117;343118;343119;343120;343121 209054;209055;209056;209057;209058;209059;209060;209061;209062;209063;209064 209061 11 SHLMSDVPYGVLLSGGLDSSIISAITK Unmodified 2759.4415 0.44153221 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.984 53.503 3 2.5171E-16 26623 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.91 149.18 678130000 86080000 94286000 76736000 0 0 0 113800000 115920000 122880000 0 2418500 0 8992200 9832500 9294600 0 0 0 19827000 18067000 0 0 0 0 18470 1191 17892 343122;343123;343124;343125;343126;343127;343128;343129;343130;343131;343132;343133 209065;209066;209067;209068;209069;209070 209065 6 SHMPEILQWQR Unmodified 1423.7031 0.70305348 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 3 3 3 1 2 3 2 32.621 31.303 2;3 1.9933E-08 15232 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 178.94 174.33 800820000 27796000 26834000 24583000 0 0 0 96877000 76082000 81211000 0 0 0 68648000 67673000 71441000 0 552810 0 77628000 95752000 85739000 0 0 0 18471 1215 17893 343134;343135;343136;343137;343138;343139;343140;343141;343142;343143;343144;343145;343146;343147;343148;343149;343150;343151;343152;343153;343154;343155;343156;343157;343158;343159 209071;209072;209073;209074;209075;209076;209077;209078;209079;209080;209081;209082;209083;209084;209085;209086 209071 16 SHMPYSK Unmodified 848.38507 0.38507338 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.619 11.435 2 0.0021784 2670 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.88 88.355 906670000 14495000 13127000 11365000 0 0 0 140660000 120150000 145170000 0 0 0 83340000 80774000 70299000 0 0 0 83890000 77748000 65646000 0 0 0 18472 654 17894 343160;343161;343162;343163;343164;343165;343166;343167;343168;343169;343170;343171 209087;209088;209089;209090;209091 209089 5 SHNVTPNTSR Unmodified 1111.537 0.53703401 575 P0AA47 plaP Low-affinity putrescine importer PlaP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 5.6537 6.6007 2 0.00071946 1471 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 88.948 88.948 8840600 0 0 0 0 0 0 0 0 0 0 0 0 1806000 1379400 1705300 0 0 0 2422300 1527600 0 0 0 0 18473 575 17895 343172;343173;343174;343175;343176 209092;209093 209092 2 SHRPPMPDDLR Unmodified 1319.6405 0.64045322 37 P00582 polA DNA polymerase I yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 13.443 14.131 2;3 0.00061286 4340 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 69.03 62.371 582260000 58065000 56639000 44740000 0 497350 595200 48841000 51473000 43243000 2301100 1851600 2864500 34494000 6005600 36546000 34862000 25590000 26144000 35862000 34080000 37566000 0 0 0 18474 37 17896 343177;343178;343179;343180;343181;343182;343183;343184;343185;343186;343187;343188;343189;343190;343191;343192;343193;343194;343195;343196;343197;343198;343199;343200;343201;343202;343203;343204;343205;343206;343207;343208;343209 209094;209095;209096;209097;209098;209099;209100;209101;209102;209103;209104;209105;209106;209107;209108;209109;209110;209111 209099 13 SHSSAPER Unmodified 869.39914 0.39914354 1061 P10903 narK Nitrate/nitrite transporter NarK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 5.7911 6.3758 2 0.00073819 1512 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 125.25 114.95 17091000 0 0 0 0 0 0 2518800 2261100 2357200 4524300 5430100 0 0 0 0 0 0 0 0 0 0 0 0 0 18475 1061 17897 343210;343211;343212;343213;343214 209112;209113;209114;209115 209112 4 SHSTDHSGASHGSVK Unmodified 1492.6655 0.665482 663 P0ABJ6 cyoD Cytochrome bo(3) ubiquinol oxidase subunit 4 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 5.6146 6.3131 2;3 2.9354E-20 872 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 210.44 210.44 227670000 8986900 9031700 8547700 2372500 1963900 1593000 11616000 10508000 9491000 6151400 4451200 5217200 15495000 13181000 12053000 1692600 911120 1155800 29977000 28456000 28519000 6156600 5720200 4423800 18476 663 17898 343215;343216;343217;343218;343219;343220;343221;343222;343223;343224;343225;343226;343227;343228;343229;343230;343231;343232;343233;343234;343235;343236;343237;343238;343239;343240;343241;343242;343243;343244;343245;343246;343247;343248 209116;209117;209118;209119;209120;209121;209122;209123;209124;209125;209126;209127;209128;209129;209130;209131;209132;209133;209134;209135;209136 209129 21 SHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMK Unmodified 3624.6977 0.69771669 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.463 40.764 4 1.7103E-33 19985 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 187.45 184.32 396230000 20061000 19237000 24007000 0 0 0 33189000 29687000 25553000 0 0 0 30519000 24938000 21804000 0 0 0 63092000 44629000 59510000 0 0 0 18477 346 17899 343249;343250;343251;343252;343253;343254;343255;343256;343257;343258;343259;343260 209137;209138;209139;209140;209141;209142;209143;209144;209145 209138 9 SHVELQPGFDFQQAGK Unmodified 1786.8638 0.86384745 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 30.206 28.85 2;3 1.6478E-19 13889 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 202 193.59 515440000 41334000 39155000 33824000 0 0 0 42436000 38627000 43364000 0 0 0 39511000 45147000 34923000 0 0 0 55491000 53702000 47925000 0 0 0 18478 1565 17900 343261;343262;343263;343264;343265;343266;343267;343268;343269;343270;343271;343272;343273;343274;343275;343276;343277;343278;343279;343280;343281;343282;343283;343284 209146;209147;209148;209149;209150;209151;209152;209153;209154;209155;209156;209157;209158;209159;209160;209161;209162;209163;209164;209165;209166;209167 209146 22 SHVELQPGFDFQQAGK Acetyl (Protein N-term) 1828.8744 0.87441214 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 1 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.402 37.729 2 7.2933E-31 18321 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 234.63 230.46 117790000 22334000 21106000 18529000 0 0 0 7014900 6519800 5705700 0 0 0 5239900 6202300 5112900 0 0 0 5721000 7457700 6846700 0 0 0 18479 1565 17900 343285;343286;343287;343288;343289;343290;343291;343292;343293;343294;343295;343296 209168;209169;209170;209171;209172;209173 209171 5 SHVINMLDGDALR Unmodified 1439.7191 0.71909747 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 2 30.375 29.164 2;3 1.2047E-12 13526 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 196.11 192.1 558500000 163850000 177250000 162580000 0 0 0 0 0 2920700 0 0 0 9091200 8802500 9334100 0 0 0 7173900 7124200 10380000 0 0 0 18480 1412 17901 343297;343298;343299;343300;343301;343302;343303;343304;343305;343306;343307;343308;343309;343310;343311;343312;343313 209174;209175;209176;209177;209178;209179 209176 6 SHVWGNVK Unmodified 925.477 0.47699993 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.221 12.967 2 3.2648E-09 3608 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 210.67 201.43 5323800000 747350000 783810000 712860000 2603000 1758400 2703000 400950000 368250000 335130000 1072100 698680 693270 369080000 322230000 311720000 0 0 0 306150000 332470000 323710000 526680 0 0 18481 489 17902 343314;343315;343316;343317;343318;343319;343320;343321;343322;343323;343324;343325;343326;343327;343328;343329;343330;343331;343332 209180;209181;209182;209183;209184;209185;209186;209187;209188;209189;209190;209191 209185 12 SHWSEQQQNNDNGSPTLEVDALVLNPGR Unmodified 3104.4548 0.45476753 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.692 40.424 3 4.6612E-41 19848 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 203.25 202.81 190750000 33650000 35781000 35430000 0 2342800 0 0 0 0 4399900 0 0 0 0 7317200 10233000 11005000 13251000 11830000 11158000 14353000 0 0 0 18482 841 17903 343333;343334;343335;343336;343337;343338;343339;343340;343341;343342;343343;343344 209192;209193;209194;209195;209196;209197;209198;209199 209197 8 SIADQIDINK Unmodified 1115.5823 0.58225287 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 26.861 25.551 2 0.00051233 11859 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.233 85.196 134080000 18250000 0 0 0 0 0 26493000 31075000 24851000 0 0 0 0 0 0 0 0 0 19004000 14408000 0 0 0 0 18483 1155 17904 343345;343346;343347;343348;343349;343350 209200;209201;209202 209200 2 SIAGGFPLAGVTGR Unmodified 1301.7092 0.70918471 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.855 39.028 2 6.4117E-06 19360 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.86 92.993 1566100000 332510000 322910000 342780000 323240 1029500 742520 119420000 110210000 102590000 5235700 4434400 3638400 20172000 21120000 21412000 0 0 0 56442000 52615000 48557000 0 0 0 18484 1194 17905 343351;343352;343353;343354;343355;343356;343357;343358;343359;343360;343361;343362;343363;343364;343365;343366;343367;343368 209203;209204;209205;209206;209207;209208;209209;209210 209205 8 SIALLAMTGKPTSPLGLAAK Unmodified 1939.1176 0.1176193 1135 P17115 gutQ Arabinose 5-phosphate isomerase GutQ yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 43.393 41.871 2;3 2.6423E-10 20922 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.74 120.72 250900000 20416000 19104000 13396000 0 0 0 20507000 23491000 23243000 0 0 0 18587000 17764000 21798000 0 0 0 25358000 23585000 23655000 0 0 0 18485 1135 17906 343369;343370;343371;343372;343373;343374;343375;343376;343377;343378;343379;343380;343381;343382;343383;343384;343385;343386;343387;343388;343389;343390;343391 209211;209212;209213;209214;209215;209216;209217 209211 7 SIAPVLK Unmodified 726.46398 0.46397563 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.815 20.305 2 0.040498 7855 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 64.776 20.166 413530000 14487000 17056000 18029000 0 0 0 40179000 33264000 32344000 0 0 0 41865000 39235000 31975000 0 0 0 43380000 48094000 53616000 0 0 0 18486 1307 17907 343392;343393;343394;343395;343396;343397;343398;343399;343400;343401;343402;343403 209218;209219;209220;209221;209222;209223;209224;209225 209222 8 SIATLFELCER Unmodified 1337.6649 0.66493664 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.811 46.24 2 4.1964E-10 21446 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 181.25 167.13 149090000 10603000 8450500 11284000 0 0 0 17705000 20047000 17066000 4158900 4218800 5730300 6971300 13840000 15551000 0 0 0 0 0 0 3642000 4250700 5568000 18487 1197 17908 343404;343405;343406;343407;343408;343409;343410;343411;343412;343413;343414;343415;343416;343417;343418 209226;209227;209228;209229;209230;209231;209232;209233;209234;209235;209236;209237;209238 209238 10 SIAVIGASMKPNR Unmodified 1342.7391 0.73910463 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 1 By MS/MS By matching 2 1 20.733 21.157 2;3 9.6289E-05 8459 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.549 56.325 8963600 4608100 4355500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18488 1878 17909 343419;343420;343421 209239;209240 209239 2 SICLNFGIAQDYK Unmodified 1527.7392 0.73916421 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.126 42.611 2 1.4045E-09 19775 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 177.57 167.79 510810000 37039000 30437000 32752000 0 0 0 43537000 43558000 43612000 0 0 0 41250000 35287000 40000000 0 0 0 60041000 52033000 51266000 0 0 0 18489 63 17910 343422;343423;343424;343425;343426;343427;343428;343429;343430;343431;343432;343433 209241;209242;209243;209244;209245;209246;209247;209248;209249;209250;209251;209252;209253;209254;209255;209256;209257;209258;209259 209258 19 SIDALQHVLINK Unmodified 1349.7667 0.76669959 732 P0ACI6 asnC Regulatory protein AsnC yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 32.556 31.189 3 0.0056123 14779 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.641 52.73 64405000 0 8217700 4746500 0 0 0 8305200 9065600 7186000 0 0 0 4448600 5253000 4562500 0 0 0 6132900 6486900 0 0 0 0 18490 732 17911 343434;343435;343436;343437;343438;343439;343440;343441;343442;343443 209260;209261;209262 209261 3 SIDAVVDVTNYVLLELGQPMHAFDKDR Unmodified 3044.5277 0.52772146 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 2 2 2 2 2 2 55.568 54.114 3;4 6.1843E-53 25872 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 232.19 220.45 2561800000 201590000 224470000 198290000 0 5800100 0 187620000 140940000 152410000 0 0 0 235440000 243160000 206970000 0 0 0 290120000 247190000 227800000 0 0 0 18491 161 17912 343444;343445;343446;343447;343448;343449;343450;343451;343452;343453;343454;343455;343456;343457;343458;343459;343460;343461;343462;343463;343464;343465;343466 209263;209264;209265;209266;209267;209268;209269;209270;209271;209272;209273;209274;209275;209276;209277;209278;209279;209280;209281 209278 19 SIDDSLR Unmodified 804.39775 0.39774656 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.86 16.675 2 0.005062 5447 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 101.21 84.657 290070000 49881000 46476000 44349000 0 0 0 29400000 28698000 28202000 0 0 0 9786700 9523000 8549200 0 0 0 12227000 10040000 12941000 0 0 0 18492 1934 17913 343467;343468;343469;343470;343471;343472;343473;343474;343475;343476;343477;343478 209282 209282 1 SIDEQEDKPLKVEGIDVVSLPFYK Unmodified 2747.4269 0.42692801 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.775 45.486 4 0.0045189 22243 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 47.281 44.294 151120000 12345000 11901000 9273900 0 0 0 0 7296700 7961400 8834800 8123200 0 10803000 9974700 12268000 0 3369000 5146700 18012000 11083000 9289100 0 0 5440000 18493 1932 17914 343479;343480;343481;343482;343483;343484;343485;343486;343487;343488;343489;343490;343491;343492;343493;343494 209283;209284;209285 209285 3 SIDEVTPAEFDALLLPGGHSPDYLR Unmodified 2711.3443 0.34426101 1570 P45470 yhbO Protein YhbO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.816 52.376 3 4.8983E-22 25541 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 161.66 150.07 608610000 91600000 92336000 94764000 0 0 0 76021000 84728000 78558000 0 0 0 11478000 13444000 10302000 0 0 0 20992000 17515000 16874000 0 0 0 18494 1570 17915 343495;343496;343497;343498;343499;343500;343501;343502;343503;343504;343505;343506 209286;209287;209288;209289;209290;209291;209292;209293;209294;209295;209296;209297 209294 12 SIDTAAAYKNEEGVGK Unmodified 1651.8053 0.80532952 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.885 16.543 3 1.7469E-06 5763 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 74.772 71.933 61970000 9272500 8528800 11681000 0 0 0 9333100 8835700 7877800 0 1506400 0 0 1456900 0 0 0 0 3477600 0 0 0 0 0 18495 1960 17916 343507;343508;343509;343510;343511;343512;343513;343514;343515 209298;209299 209299 2 SIDVQISR Unmodified 916.49779 0.49779495 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.882 21.023 2 1.459E-05 6397 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 178.08 135.08 1120100000 120170000 109000000 94399000 12475000 13756000 13915000 100160000 88518000 77999000 18148000 19096000 13559000 54818000 57054000 54656000 26977000 24480000 21837000 57632000 62019000 65336000 5548600 4598900 3916900 18496 570 17917 343516;343517;343518;343519;343520;343521;343522;343523;343524;343525;343526;343527;343528;343529;343530;343531;343532;343533;343534;343535;343536;343537;343538;343539 209300;209301;209302;209303;209304;209305;209306;209307;209308;209309;209310;209311;209312;209313;209314;209315;209316;209317;209318 209300 19 SIEGTAR Unmodified 732.37662 0.37661719 350 P0A7J7 rplK 50S ribosomal protein L11 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 1 1 1 1 1 2 2 2 1 2 2 10.657 11.248 1;2 0.0010138 2566 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.85 76.133 5256700000 754100000 738500000 620920000 48467000 39034000 0 277570000 224990000 217400000 64701000 62606000 63283000 257480000 230480000 202000000 12071000 0 32675000 420100000 382090000 412450000 55735000 76165000 63856000 18497 350 17918 343540;343541;343542;343543;343544;343545;343546;343547;343548;343549;343550;343551;343552;343553;343554;343555;343556;343557;343558;343559;343560;343561;343562;343563;343564;343565;343566;343567;343568;343569;343570;343571;343572;343573;343574;343575 209319;209320;209321;209322 209320 4 SIENLDNLHTR Unmodified 1310.6579 0.65787742 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 18.961 19.508 2;3 2.5348E-14 7608 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 200.56 184.9 1320200000 106770000 96442000 86845000 0 0 0 153570000 154140000 145020000 0 0 0 106990000 90519000 84946000 0 0 0 105790000 91546000 96890000 0 694540 0 18498 1252 17919 343576;343577;343578;343579;343580;343581;343582;343583;343584;343585;343586;343587;343588;343589;343590;343591;343592;343593;343594;343595;343596;343597;343598;343599;343600 209323;209324;209325;209326;209327;209328;209329;209330;209331;209332;209333 209324 6 SIEPGDIPTPLMAEYYR Unmodified 1950.9397 0.93971451 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.388 48.973 2 5.7326E-14 23849 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 208.95 193.92 415950000 5636800 7278900 7151000 0 0 0 42947000 40493000 42162000 0 0 0 41946000 35718000 44297000 0 0 0 50536000 46125000 51661000 0 0 0 18499 1890 17920 343601;343602;343603;343604;343605;343606;343607;343608;343609;343610;343611;343612 209334;209335;209336;209337;209338;209339;209340;209341;209342 209336 9 SIEQGGTTLKDFLQSDGKPGYFAQELQVYGR Unmodified 3431.6997 0.69974882 112 P05523 mutM Formamidopyrimidine-DNA glycosylase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 47.154 47.209 4 1.277E-12 17217 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 117.81 117.64 33927000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9212000 13671000 11044000 0 0 0 0 0 0 18500 112 17921 343613;343614;343615 209343;209344;209345 209345 3 SIEQRPLIVMENVEEGGFFGR Unmodified 2406.2002 0.20017973 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 49.99 48.48 3 2.4046E-10 19670 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 120.71 120.2 54390000 0 3734400 0 0 0 0 11445000 0 0 12740000 10670000 7656100 0 0 0 0 0 0 0 0 0 0 0 8144100 18501 189 17922 343616;343617;343618;343619;343620;343621 209346;209347;209348 209346 3 SIERIGDRCQNICEFIFYYVK Unmodified 2709.3043 0.30432723 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 2 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 46.113 44.643 4 0.17245 20925 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 11.201 8.0452 92908000 0 0 0 0 0 0 0 0 17291000 0 0 0 18131000 17767000 21268000 0 0 0 18451000 0 0 0 0 0 18502 531 17923 343622;343623;343624;343625;343626 209349 209349 1 SIETLLK Unmodified 802.48002 0.48001963 1647 P62615 ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 27.669 26.502 2 0.030014 12198 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 67.035 16.915 180280000 20274000 24100000 23361000 0 0 255500 13884000 15584000 12849000 0 0 0 9481800 10978000 9532500 0 0 0 14612000 13413000 11954000 0 0 0 18503 1647 17924 343627;343628;343629;343630;343631;343632;343633;343634;343635;343636;343637;343638;343639 209350;209351;209352;209353;209354 209351 5 SIFILPPSK Unmodified 1000.5957 0.59571809 1622 P60546 gmk Guanylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.381 36.707 2 0.00037215 17760 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 111.95 101.53 141790000 11244000 10114000 9629600 0 0 0 11832000 12275000 11756000 0 0 0 9081100 10061000 10203000 0 0 0 15354000 15247000 14992000 0 0 0 18504 1622 17925 343640;343641;343642;343643;343644;343645;343646;343647;343648;343649;343650;343651 209355;209356;209357;209358;209359;209360;209361;209362;209363;209364;209365;209366;209367;209368;209369 209361 14 SIGATTHVGVTASSDTFYPGQER Unmodified 2380.1295 0.12951721 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 10 9 9 1 1 20 21 17 1 2 2 19 18 16 1 1 1 21 22 19 1 3 1 38.54 37.06 2;3 1.9892E-75 12744 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 367.23 329.2 8778200000 195290000 161190000 145500000 2367100 2626400 0 1529300000 1506800000 1380100000 6164500 4112600 6282000 571100000 621410000 564600000 13279000 9292200 9589100 679860000 740630000 614230000 3510300 7620100 3339700 18505 1079 17926 343652;343653;343654;343655;343656;343657;343658;343659;343660;343661;343662;343663;343664;343665;343666;343667;343668;343669;343670;343671;343672;343673;343674;343675;343676;343677;343678;343679;343680;343681;343682;343683;343684;343685;343686;343687;343688;343689;343690;343691;343692;343693;343694;343695;343696;343697;343698;343699;343700;343701;343702;343703;343704;343705;343706;343707;343708;343709;343710;343711;343712;343713;343714;343715;343716;343717;343718;343719;343720;343721;343722;343723;343724;343725;343726;343727;343728;343729;343730;343731;343732;343733;343734;343735;343736;343737;343738;343739;343740;343741;343742;343743;343744;343745;343746;343747;343748;343749;343750;343751;343752;343753;343754;343755;343756;343757;343758;343759;343760;343761;343762;343763;343764;343765;343766;343767;343768;343769;343770;343771;343772;343773;343774;343775;343776;343777;343778;343779;343780;343781;343782;343783;343784;343785;343786;343787;343788;343789;343790;343791;343792;343793;343794;343795;343796;343797;343798;343799;343800;343801;343802;343803;343804;343805;343806;343807;343808;343809;343810;343811;343812;343813;343814;343815;343816;343817;343818;343819;343820;343821;343822;343823;343824;343825;343826;343827;343828;343829;343830;343831;343832;343833;343834;343835;343836;343837;343838;343839;343840;343841;343842;343843;343844;343845;343846;343847;343848;343849;343850;343851;343852;343853;343854;343855;343856;343857;343858;343859;343860;343861;343862;343863;343864;343865;343866;343867 209370;209371;209372;209373;209374;209375;209376;209377;209378;209379;209380;209381;209382;209383;209384;209385;209386;209387;209388;209389;209390;209391;209392;209393;209394;209395;209396;209397;209398;209399;209400;209401;209402;209403;209404;209405;209406;209407;209408;209409;209410;209411;209412;209413;209414;209415;209416;209417;209418;209419;209420;209421;209422;209423;209424;209425;209426;209427;209428;209429;209430;209431;209432;209433;209434;209435;209436;209437;209438;209439;209440;209441;209442;209443;209444;209445;209446;209447;209448;209449;209450;209451;209452;209453;209454;209455;209456;209457;209458;209459;209460;209461;209462;209463;209464;209465;209466;209467;209468;209469;209470;209471;209472;209473;209474;209475;209476;209477;209478;209479;209480;209481;209482;209483;209484;209485;209486;209487;209488;209489;209490;209491;209492;209493;209494;209495;209496;209497;209498;209499;209500;209501;209502;209503;209504;209505;209506;209507;209508;209509;209510;209511;209512;209513;209514;209515;209516;209517;209518;209519;209520;209521;209522;209523;209524;209525;209526;209527;209528;209529;209530;209531;209532;209533;209534;209535;209536;209537;209538;209539 209400 151 SIGFSSSSTGR Unmodified 1084.5149 0.51490158 1032 P0C037 yaiE UPF0345 protein YaiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 16.05 16.842 2;3 1.2285E-06 6244 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 156.62 151.88 1931100000 209790000 189880000 187910000 662260 560750 764130 219410000 202470000 191860000 0 0 0 138610000 120910000 100980000 0 0 0 120550000 129820000 116940000 0 0 0 18506 1032 17927 343868;343869;343870;343871;343872;343873;343874;343875;343876;343877;343878;343879;343880;343881;343882;343883 209540;209541;209542;209543;209544;209545;209546;209547;209548;209549;209550 209540 7 SIGHQDPGATSVMFMMQMLALAAK Unmodified 2534.2154 0.21537756 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.232 54.132 3 3.353E-11 26994 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.64 98.938 257220000 10086000 7849300 0 0 0 0 29259000 24472000 29267000 0 0 0 24020000 27126000 20619000 18047000 23225000 16362000 26889000 0 0 0 0 0 18507 1805 17928 343884;343885;343886;343887;343888;343889;343890;343891;343892;343893;343894;343895 209551 209551 1 SIGLIHQDNSTDAMEEIKK Unmodified 2128.047 0.047033132 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 25.145 24.004 3;4 2.4653E-14 10553 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.44 139.19 635990000 80710000 86205000 76501000 2094700 0 5074200 47200000 48353000 45672000 30189000 22920000 23506000 30138000 29679000 27510000 0 0 0 29274000 29127000 21833000 0 0 0 18508 658 17929 343896;343897;343898;343899;343900;343901;343902;343903;343904;343905;343906;343907;343908;343909;343910;343911;343912;343913;343914;343915;343916;343917;343918;343919;343920;343921;343922;343923;343924;343925;343926;343927 209552;209553;209554;209555;209556;209557;209558;209559;209560;209561;209562;209563;209564;209565;209566;209567;209568;209569;209570;209571;209572 209564 21 SIGLVIPDLENTSYTR Unmodified 1776.9258 0.92577901 738 P0ACP1 cra Catabolite repressor/activator yes yes 0 0 0 By MS/MS 1 50.025 48.718 2 1.6178E-11 23833 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.45 125.05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18509 738 17930 343928 209573 209573 1 SIGNTVSPQDVMNK Unmodified 1488.7242 0.72424243 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.925 24.828 2 4.4757E-08 11300 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 186.46 182.3 1790500000 196570000 175230000 173830000 0 0 0 130070000 140570000 139650000 0 0 0 111940000 115330000 115230000 0 0 0 156650000 170180000 165270000 0 0 0 18510 58 17931 343929;343930;343931;343932;343933;343934;343935;343936;343937;343938;343939;343940 209574;209575;209576;209577;209578;209579;209580;209581;209582;209583;209584;209585 209576 12 SIGTLSAFEQNALEGMLDTLK Unmodified 2237.1249 0.1249491 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.596 54.123 2;3 1.717E-63 27001 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 291.46 276.43 5613800000 910070000 895340000 822410000 0 0 0 311410000 277530000 239330000 0 0 0 257420000 286890000 236130000 0 0 0 470890000 464530000 441880000 0 0 0 18511 1642 17932 343941;343942;343943;343944;343945;343946;343947;343948;343949;343950;343951;343952;343953;343954;343955;343956;343957;343958;343959;343960;343961;343962;343963;343964 209586;209587;209588;209589;209590;209591;209592;209593;209594;209595;209596;209597;209598;209599;209600;209601;209602;209603;209604;209605;209606 209587 21 SIGTLSAFEQNALEGMLDTLKK Unmodified 2365.2199 0.21991212 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 3 3 3 1 1 2 2 3 3 3 2 3 3 3 1 54.736 53.305 2;3;4 5.659E-35 26477 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 211.33 183.81 9219700000 1616700000 1326500000 1594100000 3226800 3261400 0 498250000 501310000 456220000 0 0 0 358180000 376800000 285390000 0 0 0 768060000 764440000 665670000 0 1557600 0 18512 1642 17933 343965;343966;343967;343968;343969;343970;343971;343972;343973;343974;343975;343976;343977;343978;343979;343980;343981;343982;343983;343984;343985;343986;343987;343988;343989;343990;343991;343992;343993;343994;343995;343996;343997;343998;343999;344000 209607;209608;209609;209610;209611;209612;209613;209614;209615;209616 209607 10 SIGVAVGQR Unmodified 885.50321 0.50321468 432 P0A8I1 yqgF Putative Holliday junction resolvase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.081 16.892 2 0.0070396 5850 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 68.787 52.082 53405000 6171700 6309300 6450600 0 0 0 5347000 0 5196200 0 0 0 3893900 3327400 0 0 0 0 5224500 5496100 5987900 0 0 0 18513 432 17934 344001;344002;344003;344004;344005;344006;344007;344008;344009;344010 209617;209618 209618 2 SIGVCNFQIHHLQR Unmodified 1707.8627 0.86274202 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 22.417 21.943 2;4 2.3837E-26 9114 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 230.41 198.98 1345600000 210180000 207350000 198310000 0 0 0 190120000 175570000 164520000 0 0 0 28478000 28440000 24281000 0 0 0 42934000 32255000 43192000 0 0 0 18514 1960 17935 344011;344012;344013;344014;344015;344016;344017;344018;344019;344020;344021;344022;344023;344024;344025;344026;344027;344028;344029;344030;344031;344032 209619;209620;209621;209622;209623;209624;209625;209626;209627;209628;209629;209630;209631;209632 209629 14 SIGVGQYQHDVSQTQLAR Unmodified 1985.9919 0.99190151 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 24.325 23.371 2;3 2.4174E-36 10570 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 256.81 248.9 1198100000 74079000 90705000 81196000 0 1098300 0 96206000 90947000 85527000 2975000 2287500 2698300 92875000 88004000 96610000 0 0 1175000 137060000 128070000 121480000 1610400 1616000 1912400 18515 1586 17936 344033;344034;344035;344036;344037;344038;344039;344040;344041;344042;344043;344044;344045;344046;344047;344048;344049;344050;344051;344052;344053;344054;344055;344056;344057;344058;344059;344060;344061;344062;344063;344064 209633;209634;209635;209636;209637;209638;209639;209640;209641;209642;209643 209635 9 SIHFDSAWVPYTNFSPIYEGK Unmodified 2457.1641 0.1641118 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.262 49.971 3 3.4485E-15 24591 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.46 137.96 254810000 0 0 0 0 0 0 55338000 51088000 55138000 0 0 0 32916000 25516000 34811000 0 0 0 0 0 0 0 0 0 18516 520 17937 344065;344066;344067;344068;344069;344070 209644;209645;209646 209646 3 SIHGDDDDHDHAEK Unmodified 1589.6342 0.63424145 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 4.7071 5.5603 2 2.4038E-06 1050 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.42 120.08 31908000 0 0 0 0 0 0 6466600 6049100 7722300 0 0 0 0 0 0 0 0 0 6163700 0 5506300 0 0 0 18517 1509 17938 344071;344072;344073;344074;344075;344076 209647;209648;209649;209650 209647 4 SIHTIDATQPLEAVMDAIR Unmodified 2080.0623 0.062289266 301 P0A720 tmk Thymidylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.655 51.373 3 1.4218E-23 24250 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 159.88 157.48 454560000 38327000 31794000 25503000 0 0 0 31754000 31731000 32306000 0 0 0 45375000 40059000 40000000 0 0 0 47413000 47696000 42603000 0 0 0 18518 301 17939 344077;344078;344079;344080;344081;344082;344083;344084;344085;344086;344087;344088 209651;209652;209653;209654;209655;209656;209657;209658;209659;209660;209661;209662 209660 12 SIIDKLSLAGK Unmodified 1143.6863 0.68632401 501 P0A998 ftnA Bacterial non-heme ferritin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 31.616 29.761 2 1.1419E-05 11428 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 150.81 142.77 88491000 0 0 0 0 0 0 0 0 0 20877000 24952000 20076000 1788200 0 1424100 0 0 0 0 0 0 5971000 5864700 7537700 18519 501 17940 344089;344090;344091;344092;344093;344094;344095;344096 209663;209664;209665;209666;209667;209668 209664 6 SIIGLMIESNIHEGNQSSEQPR Unmodified 2438.186 0.18598623 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 40.918 39.22 3 6.4114E-29 18290 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 200.39 192.77 175750000 10549000 9564300 11932000 0 0 0 22925000 18225000 19508000 0 0 0 10270000 10179000 7375300 0 0 0 20213000 15483000 15932000 0 3594600 0 18520 45 17941 344097;344098;344099;344100;344101;344102;344103;344104;344105;344106;344107;344108;344109 209669;209670;209671;209672;209673;209674;209675;209676;209677;209678 209677 10 SIIVATGAK Unmodified 858.51747 0.51746776 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.52 17.13 2 0.00058912 6189 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.36 73.886 2198800000 150350000 115050000 89296000 1373800 1239500 1387900 337130000 305210000 280360000 3254600 1634900 0 152010000 136600000 145130000 1121200 868550 883360 176690000 150850000 148320000 0 0 0 18521 1437 17942 344110;344111;344112;344113;344114;344115;344116;344117;344118;344119;344120;344121;344122;344123;344124;344125;344126;344127;344128;344129;344130 209679;209680;209681;209682;209683;209684;209685;209686;209687;209688;209689;209690;209691 209680 13 SILANVEQIK Unmodified 1113.6394 0.63937381 1359 P31119 aas Bifunctional protein Aas;2-acylglycerophosphoethanolamine acyltransferase;Acyl-[acyl-carrier-protein] synthetase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 32.389 30.736 2 0.16522 14692 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 39.622 32.142 15243000 0 0 0 0 0 0 5258600 0 4180300 0 0 0 0 0 0 0 0 0 5803800 0 0 0 0 0 18522 1359 17943 344131;344132;344133 209692 209692 0 SILELLK Unmodified 814.51641 0.51640513 1346 P30750 metN Methionine import ATP-binding protein MetN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.845 40.966 2 0.051776 16847 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 62.714 10.031 139370000 10145000 5805400 0 1588600 2225800 2214700 17612000 12544000 13010000 7933300 7689900 5963600 7098300 8701500 7007400 0 0 0 9991100 7330800 10489000 0 2023500 0 18523 1346 17944 344134;344135;344136;344137;344138;344139;344140;344141;344142;344143;344144;344145;344146;344147;344148;344149;344150;344151 209693;209694;209695 209693 3 SILILGAGPIVIGQACEFDYSGAQACK Unmodified 2837.4092 0.40918623 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 54.587 53.324 2;3 8.5447E-80 26308 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 274.6 270.5 270470000 36594000 25857000 28921000 0 0 0 0 0 0 0 0 0 0 0 0 3866700 0 0 71838000 63971000 39420000 0 0 0 18524 65 17945 344152;344153;344154;344155;344156;344157;344158;344159;344160;344161 209696;209697;209698 209698 3 SILLTALAR Unmodified 956.60187 0.6018661 875 P0AEN1 fre NAD(P)H-flavin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.217 37.372 2 4.3388E-11 17974 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 204.19 81.414 1101200000 97375000 68595000 83976000 1819300 1696300 1922200 83324000 80307000 86111000 2269600 2298700 2718400 81060000 72503000 81125000 0 0 0 126180000 117100000 104850000 0 3141300 2803700 18525 875 17946 344162;344163;344164;344165;344166;344167;344168;344169;344170;344171;344172;344173;344174;344175;344176;344177;344178;344179;344180;344181 209699;209700;209701;209702;209703;209704;209705;209706;209707;209708;209709;209710;209711;209712;209713 209709 15 SILSELVR Unmodified 915.53893 0.53893149 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.672 39.067 2 0.0001056 13486 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 160.03 104.42 7353400000 922320000 840770000 803940000 28636000 0 27301000 323110000 321670000 346490000 81849000 86242000 68644000 387010000 381280000 351090000 70036000 59226000 126270000 636570000 677940000 568740000 85451000 80151000 78620000 18526 1630 17947 344182;344183;344184;344185;344186;344187;344188;344189;344190;344191;344192;344193;344194;344195;344196;344197;344198;344199;344200;344201;344202;344203;344204;344205 209714;209715;209716;209717;209718;209719;209720;209721;209722;209723;209724;209725;209726;209727;209728;209729;209730;209731;209732;209733;209734;209735;209736;209737;209738;209739;209740 209716 27 SILVTRPSPAGEELVSR Unmodified 1809.9949 0.99486163 200 P09126 hemD Uroporphyrinogen-III synthase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.508 26.361 3 0.13274 12138 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 24.011 10.179 144360000 19674000 20855000 20097000 0 0 0 9764300 9504500 8478500 0 0 0 7094000 7188500 7736900 0 0 0 12910000 12812000 8241100 0 0 0 18527 200 17948 344206;344207;344208;344209;344210;344211;344212;344213;344214;344215;344216;344217 209741 209741 1 SIMELSGR Unmodified 891.4484 0.44840192 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 2 1 2 1 1 1 1 2 2 22.301 22.112 2 0.0003557 9398 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.85 108.75 695080000 62836000 66288000 52604000 4313200 4639700 4236000 34271000 36109000 46832000 0 0 0 48515000 48532000 45467000 2999600 2792400 3379000 67451000 82810000 81006000 0 0 0 18528 862 17949 344218;344219;344220;344221;344222;344223;344224;344225;344226;344227;344228;344229;344230;344231;344232;344233;344234;344235;344236;344237;344238;344239;344240;344241;344242;344243 209742;209743;209744;209745;209746;209747;209748;209749;209750;209751;209752;209753;209754 209749 13 SIMIEIR Unmodified 860.47897 0.47897377 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.207 29.812 2 0.0010521 10080 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 137.83 112.27 824700000 43823000 34212000 35387000 21667000 19814000 19859000 36814000 40835000 33253000 13623000 8997100 7553300 54398000 44432000 58543000 5846000 4878400 5460000 101160000 95260000 88679000 13714000 17389000 19100000 18529 698 17950 344244;344245;344246;344247;344248;344249;344250;344251;344252;344253;344254;344255;344256;344257;344258;344259;344260;344261;344262;344263;344264;344265;344266;344267 209755;209756;209757;209758;209759;209760;209761;209762;209763;209764;209765;209766;209767;209768;209769;209770;209771;209772;209773;209774;209775;209776 209770 22 SINAAFK Unmodified 749.40719 0.40718903 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 1 1 1 1 2 15.492 16.291 1;2 0.040351 5263 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 64.803 44.957 296850000 48593000 45016000 42455000 0 0 0 8436600 8117600 6545500 0 0 0 73484000 14478000 12194000 0 0 0 11670000 12296000 13567000 0 0 0 18530 1172 17951 344268;344269;344270;344271;344272;344273;344274;344275;344276;344277;344278;344279;344280;344281;344282;344283;344284 209777;209778;209779 209778 1 SINAEVTNSAIELK Unmodified 1487.7831 0.78313752 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 31.446 29.873 2 1.8252E-06 14438 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 159.44 142.53 378760000 0 0 0 0 0 0 107240000 2039900 87958000 0 0 0 74303000 0 0 0 0 0 0 0 107210000 0 0 0 18531 1215 17952 344285;344286;344287;344288;344289 209780;209781;209782;209783 209780 4 SINLMEMPGLNVGYLSYNVQK Unmodified 2369.1759 0.17593882 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 54.129 52.72 2 9.5563E-28 26168 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 255.72 253.08 879480000 297080000 288810000 281410000 0 0 0 3456700 0 0 0 0 0 0 0 2376600 0 0 0 0 3264300 3081400 0 0 0 18532 1219 17953 344290;344291;344292;344293;344294;344295;344296 209784;209785;209786 209785 3 SIPGISFIR Unmodified 988.57057 0.57056597 1223 P23871 hemH Ferrochelatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.333 39.533 2 0.0031935 16229 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 82.452 68.781 62458000 3982000 4445900 3623200 2522900 1958100 2253500 5802900 5363400 6762700 4173000 3159000 0 2104000 1910300 1604900 0 0 0 4770500 4209000 3812800 0 0 0 18533 1223 17954 344297;344298;344299;344300;344301;344302;344303;344304;344305;344306;344307;344308;344309;344310;344311;344312;344313;344314 209787;209788;209789;209790 209787 4 SIPHMLEHFR Unmodified 1265.6339 0.63391128 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 1 2 2 1 1 1 2 2 2 1 1 22.204 21.979 2;3 2.6535E-05 8681 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 146.58 139.36 3473800000 245910000 248130000 203300000 1832000 1271700 1110500 368060000 307880000 342800000 24983000 33299000 24640000 70493000 311400000 329790000 2108100 2566400 1817800 311620000 325750000 310440000 0 2393500 2167300 18534 539 17955 344315;344316;344317;344318;344319;344320;344321;344322;344323;344324;344325;344326;344327;344328;344329;344330;344331;344332;344333;344334;344335;344336;344337;344338;344339;344340;344341;344342;344343;344344;344345;344346;344347;344348;344349;344350;344351 209791;209792;209793;209794;209795;209796;209797;209798;209799;209800;209801;209802;209803;209804;209805;209806;209807;209808;209809;209810;209811;209812;209813;209814;209815;209816 209812 25 SIPHMLEHFR Oxidation (M) 1281.6288 0.6288259 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 22.088 22.013 3 0.0091591 8605 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 61.353 60.218 98162000 8457400 7668300 6895600 0 0 0 9014100 8023000 10784000 0 0 0 0 11083000 8161400 0 0 0 11780000 7627600 8666600 0 0 0 18535 539 17955 344352;344353;344354;344355;344356;344357;344358;344359;344360;344361;344362 209817;209818;209819;209820 209819 322 4 SIPTIMIFK Unmodified 1048.5991 0.5990889 1018 P0AGG4 trxC Thioredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 46.23 44.735 2 0.0046486 21870 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.282 77.282 258760000 27378000 28387000 31357000 0 645460 0 14653000 15572000 15314000 0 0 0 17480000 18237000 17938000 0 0 0 21070000 28495000 22233000 0 0 0 18536 1018 17956 344363;344364;344365;344366;344367;344368;344369;344370;344371;344372;344373;344374;344375 209821;209822;209823;209824;209825;209826;209827;209828;209829;209830;209831;209832 209824 12 SIQDYPK Unmodified 849.42323 0.42323303 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.171 14.037 2 0.051772 4363 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 62.715 45.751 209900000 20355000 17634000 17266000 0 0 0 18887000 16673000 12699000 0 0 0 19053000 19983000 16443000 0 0 0 18441000 15776000 16690000 0 0 0 18537 1736 17957 344376;344377;344378;344379;344380;344381;344382;344383;344384;344385;344386;344387 209833;209834 209833 2 SIQDYPKPGILFR Unmodified 1532.8351 0.83511351 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.292 33.808 2;3 8.9974E-09 15590 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 205.09 187.62 3411400000 282790000 255460000 230710000 0 0 0 254590000 255160000 208070000 0 0 0 289740000 293360000 265310000 0 0 0 364240000 355160000 356810000 0 0 0 18538 1736 17958 344388;344389;344390;344391;344392;344393;344394;344395;344396;344397;344398;344399;344400;344401;344402;344403;344404;344405;344406;344407;344408;344409;344410;344411 209835;209836;209837;209838;209839;209840;209841;209842;209843;209844;209845;209846;209847;209848;209849;209850;209851;209852;209853;209854;209855 209853 18 SIQIVSPTYTVK Unmodified 1334.7446 0.74456717 1293 P27242 waaU Lipopolysaccharide 1,2-N-acetylglucosaminetransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 32.247 30.865 2 0.0012883 14037 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 68.069 38.982 59496000 0 0 2996000 0 0 0 5992200 5142700 7809300 0 0 0 3264700 7391000 4969700 0 0 0 5475300 8816500 7638800 0 0 0 18539 1293 17959 344412;344413;344414;344415;344416;344417;344418;344419;344420;344421 209856 209856 0 SIQPAMLR Unmodified 914.50077 0.50077184 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.042 22.035 2 0.00074681 8706 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 124.89 91.149 2134600000 173650000 154380000 138370000 0 0 0 215840000 191180000 227680000 0 0 0 130520000 133760000 130460000 0 173180 0 207200000 222610000 208750000 0 0 0 18540 1409 17960 344422;344423;344424;344425;344426;344427;344428;344429;344430;344431;344432;344433;344434 209857;209858;209859;209860;209861;209862;209863;209864;209865;209866;209867;209868 209866 11 SIQPAMLRDDEILTHPVFNR Unmodified 2351.2056 0.20559946 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 38.505 37.077 3;4 3.9694E-10 14455 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 115.15 100.99 151290000 0 0 0 13960000 14601000 14665000 0 0 0 20230000 0 9361000 0 0 0 10427000 6632300 9791400 0 0 0 17428000 17123000 17071000 18541 1409 17961 344435;344436;344437;344438;344439;344440;344441;344442;344443;344444;344445;344446;344447;344448;344449;344450;344451;344452;344453;344454;344455 209869;209870;209871;209872;209873;209874;209875;209876;209877;209878;209879;209880;209881;209882;209883;209884;209885;209886 209878 18 SIQVEMAK Oxidation (M) 920.46372 0.46371763 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 1 0 By MS/MS By matching 1 1 10.519 11.299 2 0.12696 2627 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 41.227 22.451 14790000 0 0 0 0 0 0 0 8884800 5905100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18542 1141 17962 344456;344457 209887 209887 0 SIQVEMAK Unmodified 904.4688 0.46880301 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 17.147 17.86 2 0.0030318 6515 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 95.531 44.565 234640000 86868000 79379000 66134000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2255200 0 0 0 0 0 18543 1141 17962 344458;344459;344460;344461 209888;209889;209890 209889 3 SIRPDIIVNAAAHTAVDK Unmodified 1890.0323 0.032309767 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 2 1 1 2 2 2 30.952 29.632 3;4 8.5555E-07 13256 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 99.86 96.199 651650000 21381000 42458000 38410000 0 0 0 59436000 0 33921000 0 0 0 74269000 30251000 29054000 0 0 0 108730000 102860000 110880000 0 0 0 18544 1497 17963 344462;344463;344464;344465;344466;344467;344468;344469;344470;344471;344472;344473;344474;344475;344476;344477;344478;344479;344480 209891;209892;209893;209894;209895;209896;209897;209898;209899 209899 9 SIRPDIIVNAAAHTAVDKAESEPEFAQLINATSVEAIAK Unmodified 4089.1382 0.13823799 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 2 2 2 2 2 2 2 2 2 2 2 52.62 51.369 4;5 5.3806E-23 24130 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 149.18 147.82 509230000 14873000 22002000 21487000 0 0 0 42883000 42455000 39947000 0 0 0 43679000 36853000 31955000 0 0 0 68653000 65801000 78638000 0 0 0 18545 1497 17964 344481;344482;344483;344484;344485;344486;344487;344488;344489;344490;344491;344492;344493;344494;344495;344496;344497;344498;344499;344500;344501;344502;344503 209900;209901;209902;209903;209904;209905;209906 209905 7 SISASGHK Unmodified 785.40317 0.40316629 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1 2 2 2 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 6.3738 7.0226 2 0.0064075 1009 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 79.469 78.39 4796500000 821230 577500 607460 2925500 3177200 3396900 1451500000 1390600000 1422500000 30325000 23134000 22696000 0 95128000 86775000 798410 857230 760760 145360000 2480700 110610000 595620 458350 457690 18546 1755;1756 17965 344504;344505;344506;344507;344508;344509;344510;344511;344512;344513;344514;344515;344516;344517;344518;344519;344520;344521;344522;344523;344524;344525;344526;344527;344528;344529;344530;344531;344532;344533;344534 209907;209908;209909;209910;209911;209912;209913;209914;209915;209916;209917 209913 11 SISDIIAGR Unmodified 930.51345 0.51344502 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 31.648 30.517 2 0.00013565 13758 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 123.69 41.906 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18547 45 17966 344535;344536;344537;344538;344539 209918;209919;209920;209921;209922 209921 5 SISEITQDSLVQGLGK Unmodified 1673.8836 0.88357984 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.922 39.205 2 9.8309E-09 18998 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 169.65 154.96 219990000 15467000 11181000 11060000 4529000 4592600 5840400 18068000 15408000 15524000 0 0 0 13199000 10476000 10202000 0 0 0 24181000 24947000 23686000 5186000 0 6448400 18548 1417 17967 344540;344541;344542;344543;344544;344545;344546;344547;344548;344549;344550;344551;344552;344553;344554;344555;344556 209923;209924;209925;209926;209927;209928;209929;209930;209931;209932;209933;209934 209928 11 SISGHSMGGLGALVLALR Unmodified 1737.956 0.9559737 1595 P51025 frmB S-formylglutathione hydrolase FrmB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 48.227 46.827 3 7.5957E-05 22827 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 46.249 43.862 42265000 0 0 0 0 0 0 8074500 5454400 7809500 0 0 0 4588900 3024100 2434900 0 0 0 5375500 5503000 0 0 0 0 18549 1595 17968 344557;344558;344559;344560;344561;344562;344563;344564 209935 209935 0 SISIDVTSIR Unmodified 1089.603 0.60298831 611 P0AAT4 ybdG Miniconductance mechanosensitive channel YbdG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.618 33.044 2 0.011862 15048 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 73.985 69.629 54162000 0 0 0 0 743950 0 3640400 4187600 0 2447800 2979100 2144200 6177100 5358600 5217800 822070 858410 0 5562600 4938200 4210500 1872000 1334700 1667400 18550 611 17969 344565;344566;344567;344568;344569;344570;344571;344572;344573;344574;344575;344576;344577;344578;344579;344580;344581 209936;209937 209937 0 SISISVAGGGGGFGAAGGFGGR Unmodified 1837.9071 0.90710925 17 CON__P35908 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 41.704 39.742 2 7.2908E-08 15583 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 148.68 142.84 34270000 0 2234100 3183200 2932200 2652900 3444300 0 0 0 2019100 2307400 0 0 0 0 0 0 0 0 0 0 5002200 4971500 5522900 + 18551 17 17970 344582;344583;344584;344585;344586;344587;344588;344589;344590;344591 209938;209939;209940;209941;209942;209943;209944 209941 5 SISISVAR Unmodified 831.48142 0.48141661 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 1 1 1 1 1 1 21.465 21.259 2 0.00030221 6609 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 146.94 49.874 923170000 0 0 0 33177000 25495000 28203000 0 0 0 127020000 231050000 188700000 0 0 0 14335000 16054000 16018000 0 0 0 89413000 75561000 78142000 + 18552 11 17971 344592;344593;344594;344595;344596;344597;344598;344599;344600;344601;344602;344603;344604;344605;344606 209945;209946;209947;209948;209949;209950;209951;209952;209953;209954;209955;209956;209957;209958;209959;209960 209954 16 SISTATAVTAQIIAQVASHIYGGTTINR Unmodified 2843.5141 0.51412031 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 2 2 2 2 2 2 2 1 55.451 53.973 3;4 3.8589E-23 26602 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 174.31 171.51 863320000 18791000 6739500 7841300 0 0 0 94201000 104180000 95837000 0 0 0 93120000 81601000 82134000 0 0 0 94902000 82377000 97320000 0 0 4274700 18553 1323 17972 344607;344608;344609;344610;344611;344612;344613;344614;344615;344616;344617;344618;344619;344620;344621;344622;344623;344624;344625;344626;344627;344628;344629 209961;209962;209963;209964;209965;209966;209967;209968;209969;209970;209971 209965 11 SISTIAESK Unmodified 934.49713 0.49712625 1756 P69910 gadB Glutamate decarboxylase beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.176 14.927 2 0.0011011 4049 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 93.162 77.53 9394900000 705780000 639530000 636960000 2662800 2516300 2105100 2451500000 2311100000 2102000000 18440000 15388000 18123000 88938000 88837000 83125000 0 0 0 80174000 72792000 74867000 0 0 0 18554 1756 17973 344630;344631;344632;344633;344634;344635;344636;344637;344638;344639;344640;344641;344642;344643;344644;344645;344646;344647 209972;209973;209974;209975;209976;209977;209978;209979;209980;209981;209982;209983;209984;209985 209974 13 SISVVVNNDDATTGVR Unmodified 1645.8271 0.8271276 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 26.472 25.29 2 9.2252E-31 10847 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 236.57 230.18 259470000 0 0 0 1226800 1593100 1517800 20248000 17306000 17049000 0 0 0 24874000 22823000 21706000 0 0 0 48094000 43060000 39127000 847260 0 0 18555 34 17974 344648;344649;344650;344651;344652;344653;344654;344655;344656;344657;344658;344659;344660 209986;209987;209988;209989;209990;209991 209991 6 SITDACIGWEDTDALLR Unmodified 1934.9044 0.90439164 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.768 49.596 2 1.6909E-31 24090 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 243.11 237.96 952870000 186420000 167940000 142130000 6812000 6324700 5614800 39102000 44385000 45603000 4643600 3182300 4119900 40035000 37930000 0 2825900 1524200 1758700 75081000 64403000 55167000 5712900 6293100 5858700 18556 639 17975 344661;344662;344663;344664;344665;344666;344667;344668;344669;344670;344671;344672;344673;344674;344675;344676;344677;344678;344679;344680;344681;344682;344683 209992;209993;209994;209995;209996;209997;209998;209999;210000;210001;210002;210003;210004;210005 209996 10 SITLSDSAAAR Unmodified 1090.5619 0.56185177 588 P0AAC8 iscA Iron-binding protein IscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.211 18.671 2 2.3751E-10 6650 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 190.73 147.86 1131500000 105530000 97985000 93195000 7918500 9661300 10217000 96724000 81538000 80016000 11616000 5699600 5070100 74200000 62005000 50755000 0 0 0 118260000 116630000 98724000 5788000 0 0 18557 588 17976 344684;344685;344686;344687;344688;344689;344690;344691;344692;344693;344694;344695;344696;344697;344698;344699;344700;344701;344702;344703;344704 210006;210007;210008;210009;210010;210011;210012;210013;210014;210015;210016;210017;210018;210019;210020;210021;210022;210023;210024;210025 210023 20 SITNIDLNQK Unmodified 1144.6088 0.60880197 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 23.402 22.675 2 2.9702E-05 9266 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.16 115.41 253400000 0 0 0 0 0 0 0 92889000 81789000 0 0 0 31428000 24575000 22722000 0 0 0 0 0 0 0 0 0 18558 1276 17977 344705;344706;344707;344708;344709 210026;210027 210027 2 SIVEAALLDTMYDLPSMEDVEK Unmodified 2468.1702 0.17024431 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 2 3 2 1 1 1 2 2 2 2 2 2 1 1 1 55.44 53.974 2;3 5.8787E-35 25825 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 280.87 274.28 1601900000 116300000 136830000 117640000 2653100 5188700 3314900 110650000 111680000 104680000 15030000 13238000 14518000 138990000 135860000 143560000 0 0 0 161100000 126490000 132130000 3564000 4364200 4153900 18559 244 17978 344710;344711;344712;344713;344714;344715;344716;344717;344718;344719;344720;344721;344722;344723;344724;344725;344726;344727;344728;344729;344730;344731;344732;344733;344734;344735;344736;344737;344738;344739;344740;344741;344742;344743 210028;210029;210030;210031;210032;210033;210034;210035;210036;210037;210038;210039;210040;210041;210042;210043;210044 210040 16 SIVLLHPCCHNPTGADLTNDQWDAVIEILK Unmodified 3428.6857 0.68569544 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.582 51.332 4 9.9834E-34 25308 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 202.98 202.35 854660000 85743000 87778000 76883000 0 0 0 69260000 80020000 57848000 0 0 0 60861000 55701000 52212000 0 0 0 76044000 74819000 77488000 0 0 0 18560 91 17979 344744;344745;344746;344747;344748;344749;344750;344751;344752;344753;344754;344755 210045;210046;210047;210048;210049;210050;210051;210052;210053;210054;210055;210056 210047 12 SIVPEMR Unmodified 830.43202 0.43202358 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.019 22.374 2 0.0057328 9068 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 98.415 83.75 226260000 17991000 19928000 15532000 0 0 0 19683000 17496000 16506000 0 0 0 17001000 15735000 18501000 0 0 0 24660000 22741000 20485000 0 0 0 18561 1145 17980 344756;344757;344758;344759;344760;344761;344762;344763;344764;344765;344766;344767 210057;210058;210059;210060;210061;210062;210063;210064;210065 210065 9 SIVVAIER Unmodified 885.52837 0.5283668 989 P0AG63 rpsQ 30S ribosomal protein S17 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 25.342 24.306 2 0.00074805 10315 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 124.83 43.538 5721600000 738610000 704810000 602040000 20930000 21494000 23656000 337130000 289240000 287700000 57280000 55484000 55550000 320930000 350390000 300890000 32774000 29924000 28356000 464260000 485240000 415360000 33728000 28427000 37404000 18562 989 17981 344768;344769;344770;344771;344772;344773;344774;344775;344776;344777;344778;344779;344780;344781;344782;344783;344784;344785;344786;344787;344788;344789;344790;344791;344792;344793 210066;210067;210068;210069;210070;210071;210072;210073;210074;210075;210076;210077;210078;210079;210080;210081;210082;210083;210084;210085;210086;210087;210088;210089;210090;210091;210092;210093;210094;210095;210096;210097 210094 32 SIVVPAPEAQNDPR Unmodified 1491.7682 0.76815616 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.217 24.194 2 1.3519E-05 10982 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.63 84.542 525080000 33724000 37891000 31689000 0 0 0 40630000 41559000 42508000 0 0 0 45473000 44046000 43566000 0 0 0 47343000 62295000 54354000 0 0 0 18563 1889 17982 344794;344795;344796;344797;344798;344799;344800;344801;344802;344803;344804;344805 210098;210099;210100;210101;210102;210103;210104;210105;210106;210107;210108 210099 11 SIWMIGLHAFAK Unmodified 1372.7326 0.73256269 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 1 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 45.48 43.966 2;3 8.5839E-05 17831 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 120.99 106.87 363860000 2593900 3609900 2808100 5555500 9620300 7760900 10636000 11065000 8169700 39297000 35198000 53175000 9633100 9162600 7361500 5676600 7953700 7325200 19959000 17217000 17344000 30506000 27292000 14935000 18564 930 17983 344806;344807;344808;344809;344810;344811;344812;344813;344814;344815;344816;344817;344818;344819;344820;344821;344822;344823;344824;344825;344826;344827;344828;344829;344830;344831;344832;344833;344834;344835;344836;344837;344838;344839;344840;344841;344842 210109;210110;210111;210112;210113;210114;210115;210116;210117;210118;210119;210120;210121;210122;210123;210124;210125;210126;210127;210128 210115 19 SIYVAYTGGTIGMQR Unmodified 1615.8028 0.8028271 492 P0A962 ansA L-asparaginase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 36.357 34.788 2 1.1025E-11 17050 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 171.92 166.54 68477000 0 0 0 0 0 0 0 10759000 11993000 0 0 0 6020800 5338200 6919000 0 0 0 9990900 9368000 8088900 0 0 0 18565 492 17984 344843;344844;344845;344846;344847;344848;344849;344850 210129;210130;210131 210129 3 SKAEAESLYQSK Unmodified 1339.662 0.66195975 11 CON__P04264 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.458 12.855 2;3 5.4781E-31 2948 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 290.13 287.52 2073500000 0 0 0 49701000 51854000 52912000 0 0 0 460620000 383060000 360130000 0 0 0 54210000 39452000 39710000 0 0 0 187190000 173620000 221050000 + 18566 11 17985 344851;344852;344853;344854;344855;344856;344857;344858;344859;344860;344861;344862;344863;344864;344865;344866;344867;344868;344869;344870;344871;344872;344873;344874 210132;210133;210134;210135;210136;210137;210138;210139;210140;210141;210142;210143;210144;210145;210146;210147;210148;210149;210150;210151;210152;210153;210154;210155 210145 24 SKAEAESLYQSKYEELQITAGR Unmodified 2500.2445 0.24454697 11 CON__P04264 yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 1 2 2 2 1 1 1 1 29.238 27.45 3;4 2.385E-22 10282 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 177.03 174.27 165540000 0 0 0 3570200 0 1856400 0 0 0 54680000 55545000 43414000 0 0 0 0 0 1970000 0 0 0 1526100 1491900 1490000 + 18567 11 17986 344875;344876;344877;344878;344879;344880;344881;344882;344883;344884;344885;344886;344887 210156;210157;210158;210159;210160 210160 5 SKAEQALK Unmodified 873.49198 0.4919813 1689 P64581 yqjD Uncharacterized protein YqjD yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 7.365 7.9827 2 2.0541E-11 1126 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 184.38 123.58 4287200000 180100000 180580000 163010000 172790000 198930000 186260000 0 691270000 678190000 405990000 440580000 384780000 51724000 38825000 38280000 19634000 15420000 15705000 51949000 48127000 42204000 95506000 80413000 106890000 18568 1689 17987 344888;344889;344890;344891;344892;344893;344894;344895;344896;344897;344898;344899;344900;344901;344902;344903;344904;344905;344906;344907;344908;344909;344910;344911;344912;344913;344914;344915 210161;210162;210163;210164;210165;210166;210167;210168;210169;210170;210171;210172;210173;210174;210175;210176;210177;210178;210179;210180;210181;210182;210183;210184 210167 23 SKAPNSPVAGR Unmodified 1082.5833 0.58325592 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 2 2 1 1 1 2 1 1 2 2 2 10.582 11.238 2;3 2.3786E-07 2615 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 170.47 164.99 1733900000 61245000 143200000 124560000 2648800 0 0 221390000 211930000 207700000 17765000 10654000 7703300 66301000 70989000 155310000 0 4276700 2204300 104910000 155240000 165880000 0 0 0 18569 539 17988 344916;344917;344918;344919;344920;344921;344922;344923;344924;344925;344926;344927;344928;344929;344930;344931;344932;344933;344934;344935;344936;344937;344938;344939;344940;344941;344942;344943;344944 210185;210186;210187;210188;210189;210190;210191;210192;210193;210194;210195;210196;210197;210198;210199;210200;210201;210202 210187 18 SKAQALLK Unmodified 857.53345 0.53345218 800 P0ADQ7 ygaM Uncharacterized protein YgaM yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.577 12.088 2 0.00028999 2684 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 154.71 91.42 184430000 0 0 0 28691000 47563000 40533000 0 0 0 18350000 17469000 15871000 0 0 0 0 0 0 0 0 0 5020900 5693600 5238900 18570 800 17989 344945;344946;344947;344948;344949;344950;344951;344952;344953 210203;210204 210203 2 SKATNLLYTR Unmodified 1165.6455 0.64552182 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 15.688 16.159 2 0.079754 4671 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 51.436 49.084 16087000 0 0 0 2394500 1897000 2068800 0 0 0 3097900 2861100 3767900 0 0 0 0 0 0 0 0 0 0 0 0 18571 677 17990 344954;344955;344956;344957;344958;344959 210205 210205 1 SKDGAYVR Unmodified 894.45593 0.45593014 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.8356 9.4899 2 0.000266 1937 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 155.51 142.46 9261700000 72958000 73000000 304050 971640000 1180100000 1108900000 78914000 67638000 68327000 173570000 125850000 107030000 24064000 20580000 13937000 81110000 27685000 19263000 52895000 51756000 40849000 1595100000 1930200000 1376000000 18572 939 17991 344960;344961;344962;344963;344964;344965;344966;344967;344968;344969;344970;344971;344972;344973;344974;344975;344976;344977;344978;344979;344980;344981;344982;344983;344984;344985;344986 210206;210207;210208;210209;210210;210211;210212;210213;210214;210215;210216;210217;210218;210219;210220;210221;210222;210223;210224 210214 19 SKEEAEALYHSK Unmodified 1390.6729 0.67285879 17 CON__P35908 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 1 2 2 2 11.695 12.069 2;3 1.2038E-16 2578 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 212.09 209.69 298200000 0 0 0 21135000 22503000 10326000 0 0 0 18969000 11010000 15878000 0 0 0 20562000 18929000 19795000 0 0 0 46692000 44230000 48171000 + 18573 17 17992 344987;344988;344989;344990;344991;344992;344993;344994;344995;344996;344997;344998;344999;345000;345001;345002;345003;345004;345005;345006;345007;345008 210225;210226;210227;210228;210229;210230;210231;210232;210233;210234;210235 210225 11 SKEELSK Unmodified 819.4338 0.43379771 1689 P64581 yqjD Uncharacterized protein YqjD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.3572 7.9595 2 5.3453E-12 1030 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 188.76 111.91 3357800000 304600000 332550000 249110000 173610000 111700000 139550000 0 290940 307690 408600000 356520000 370640000 94655000 91049000 89108000 15853000 12222000 9092400 121950000 113460000 100070000 86973000 84723000 91178000 18574 1689 17993 345009;345010;345011;345012;345013;345014;345015;345016;345017;345018;345019;345020;345021;345022;345023;345024;345025;345026;345027;345028;345029;345030;345031;345032;345033;345034;345035 210236;210237;210238;210239;210240;210241;210242;210243;210244;210245;210246;210247;210248;210249;210250 210237 15 SKEHTTEHLR Unmodified 1236.6211 0.62109799 1689 P64581 yqjD Uncharacterized protein YqjD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 1 2 2 1 1 1 2 2 2 7.1423 7.7275 2;3 4.5832E-24 1788 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 270.06 246.27 6260800000 345670000 325280000 309540000 239920000 221050000 228680000 1370600000 401290000 424820000 554840000 501230000 621100000 46664000 35350000 99333000 342500 10083000 5609800 47085000 44583000 48073000 140620000 97334000 141700000 18575 1689 17994 345036;345037;345038;345039;345040;345041;345042;345043;345044;345045;345046;345047;345048;345049;345050;345051;345052;345053;345054;345055;345056;345057;345058;345059;345060;345061;345062;345063;345064;345065;345066;345067;345068;345069;345070;345071;345072;345073;345074;345075;345076 210251;210252;210253;210254;210255;210256;210257;210258;210259;210260;210261;210262;210263;210264;210265;210266;210267;210268;210269;210270;210271;210272;210273;210274;210275;210276 210256 26 SKELTTEIDNNIEQISSYK Unmodified 2211.0907 0.090672086 13 CON__P13645 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 1 1 1 2 2 37.233 35.53 2;3 7.0203E-18 14285 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 171.04 168.14 170920000 0 0 0 8058100 10945000 8854900 0 0 0 16788000 13392000 10446000 0 0 0 6564600 4279800 4124500 0 0 0 28268000 29473000 29728000 + 18576 13 17995 345077;345078;345079;345080;345081;345082;345083;345084;345085;345086;345087;345088;345089;345090;345091;345092;345093;345094 210277;210278;210279;210280;210281;210282;210283;210284;210285;210286;210287;210288;210289 210280 13 SKGESSLFSR Unmodified 1096.5513 0.55128709 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 3 3 2 2 2 5 5 5 2 2 2 2 3 3 14.028 14.505 2;3 3.305E-06 3763 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 159.79 143.34 29695000000 241610000 212560000 208480000 21488000 22981000 24674000 193090000 171230000 187450000 1837700000 1985400000 2000100000 174980000 168530000 152370000 4785000000 3999100000 4108100000 244440000 240140000 213940000 2842900000 2919500000 2739200000 18577 463 17996 345095;345096;345097;345098;345099;345100;345101;345102;345103;345104;345105;345106;345107;345108;345109;345110;345111;345112;345113;345114;345115;345116;345117;345118;345119;345120;345121;345122;345123;345124;345125;345126;345127;345128;345129;345130;345131;345132;345133;345134;345135;345136;345137;345138;345139;345140;345141;345142;345143;345144;345145;345146;345147;345148;345149;345150;345151;345152;345153;345154;345155;345156 210290;210291;210292;210293;210294;210295;210296;210297;210298;210299;210300;210301;210302;210303;210304;210305;210306;210307;210308;210309;210310;210311;210312;210313;210314;210315;210316;210317;210318;210319;210320;210321;210322;210323;210324;210325;210326;210327;210328;210329;210330;210331;210332;210333;210334;210335;210336;210337;210338;210339;210340;210341;210342;210343;210344;210345;210346;210347;210348;210349;210350;210351;210352 210335 63 SKGRPVFQAVR Unmodified 1243.7149 0.71493879 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.302 12.699 3 0.020961 2902 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 52.391 28.54 60597000 0 0 0 5518200 5876200 5689600 0 0 0 5377200 4703800 5121000 0 0 0 2070100 2657100 2226500 0 0 0 8139500 6153900 7064300 18578 215 17997 345157;345158;345159;345160;345161;345162;345163;345164;345165;345166;345167;345168 210353 210353 1 SKIEETR Unmodified 861.4556 0.45559579 665 P0ABK2 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.317 10.56 2 0.032782 1891 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 78.178 60.33 304320000 0 115880000 0 0 0 0 0 0 0 49024000 54760000 50088000 0 0 0 0 0 7835000 0 0 0 10250000 7885200 8603500 18579 665 17998 345169;345170;345171;345172;345173;345174;345175;345176 210354 210354 1 SKIFEDNSLTIGHTPLVR Unmodified 2026.0847 0.084739267 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 1 2 2 2 1 2 2 2 2 2 2 1 2 2 2 31.867 30.536 3;4 3.7438E-20 14729 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 180.32 174.34 478550000 29446000 17708000 20153000 12182000 12640000 6379400 65441000 70810000 79921000 0 0 0 37516000 39477000 38476000 0 1910200 0 13733000 16992000 15761000 0 0 0 18580 666 17999 345177;345178;345179;345180;345181;345182;345183;345184;345185;345186;345187;345188;345189;345190;345191;345192;345193;345194;345195;345196;345197;345198;345199;345200;345201;345202;345203;345204;345205 210355;210356;210357;210358;210359;210360;210361;210362;210363;210364;210365;210366;210367;210368;210369 210357 13 SKIFEDNSLTIGHTPLVRLNR Unmodified 2409.3128 0.31284172 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 2 2 2 2 2 2 2 1 1 32.573 31.206 3;4 1.4818E-28 15197 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 200.39 199.2 729470000 27401000 29698000 34192000 0 0 0 146610000 114770000 113980000 0 0 0 69412000 68121000 56794000 0 0 0 25559000 22643000 20281000 0 0 0 18581 666 18000 345206;345207;345208;345209;345210;345211;345212;345213;345214;345215;345216;345217;345218;345219;345220;345221;345222;345223;345224;345225 210370;210371;210372;210373;210374;210375;210376;210377;210378;210379 210371 9 SKLDLNALNELPK Unmodified 1453.814 0.81404372 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 35.449 33.819 2;3 8.1143E-06 16152 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.92 93.984 577940000 52665000 21844000 52873000 1835400 1484600 1325000 54922000 47280000 47826000 2278400 2330500 2418300 39540000 41340000 36059000 0 0 0 57882000 61427000 52608000 0 0 0 18582 1144 18001 345226;345227;345228;345229;345230;345231;345232;345233;345234;345235;345236;345237;345238;345239;345240;345241;345242;345243;345244;345245;345246;345247;345248;345249;345250;345251;345252;345253;345254 210380;210381;210382;210383;210384;210385;210386;210387;210388;210389;210390;210391;210392;210393;210394;210395 210387 16 SKLDLNALNELPKVDR Unmodified 1824.0105 0.010511692 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 34.764 32.921 4 0.12167 10960 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 25.558 23.735 15850000 0 0 0 1003100 0 0 0 0 0 2852700 1676500 2223300 0 0 0 0 0 3617000 0 0 0 2847200 0 1630300 18583 1144 18002 345255;345256;345257;345258;345259;345260;345261 210396 210396 1 SKLENMFANMTEGEVHEVNIVLK Unmodified 2631.3037 0.30365852 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 46.771 45.459 3;4 9.8365E-29 16951 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 190.24 178.94 843850000 52224000 102520000 88191000 3949600 5090500 10835000 30037000 32192000 27530000 35227000 33404000 25435000 52723000 39488000 46567000 33852000 40293000 39271000 45681000 37119000 41202000 6048800 9499300 5461700 18584 297 18003 345262;345263;345264;345265;345266;345267;345268;345269;345270;345271;345272;345273;345274;345275;345276;345277;345278;345279;345280;345281;345282;345283;345284;345285;345286;345287;345288;345289;345290;345291;345292;345293;345294;345295;345296;345297;345298;345299;345300;345301;345302;345303;345304 210397;210398;210399;210400;210401;210402;210403;210404;210405;210406;210407;210408;210409;210410;210411;210412;210413;210414;210415;210416;210417;210418;210419;210420;210421;210422;210423;210424;210425;210426;210427;210428 210397 32 SKNVPFESGIDSVGSAR Unmodified 1748.8693 0.86932676 926 P0AFC3 nuoA NADH-quinone oxidoreductase subunit A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 24.933 23.89 3 0.00010039 8271 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 54.974 51.005 33730000 0 0 0 1747700 2134500 2240400 0 0 0 4572400 3848500 5368200 0 0 0 0 1458700 1245300 0 0 0 3706500 4025300 3383000 18585 926 18004 345305;345306;345307;345308;345309;345310;345311;345312;345313;345314;345315 210429;210430 210430 2 SKPEMLIELFR Oxidation (M) 1377.7326 0.73262227 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 1 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 3 2 1 7 9 9 1 2 1 10 10 9 1 2 9 9 8 39.153 37.723 2;3 7.7569E-05 15086 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 110.08 104.76 753440000 8342200 7443500 6697900 0 0 0 3822200 0 0 51396000 53359000 51550000 3203100 3799300 949050 100980000 82380000 57110000 2132800 5718300 0 93829000 115670000 105060000 18586 935 18005 345316;345317;345318;345319;345320;345321;345322;345323;345324;345325;345326;345327;345328;345329;345330;345331;345332;345333;345334;345335;345336;345337;345338;345339;345340;345341;345342;345343;345344;345345;345346;345347;345348;345349;345350;345351;345352;345353;345354;345355;345356;345357;345358;345359;345360;345361;345362;345363;345364;345365;345366;345367;345368;345369;345370;345371;345372;345373;345374;345375;345376;345377;345378;345379;345380;345381;345382;345383;345384;345385;345386;345387;345388;345389;345390;345391;345392;345393;345394;345395;345396;345397;345398;345399;345400;345401;345402;345403;345404;345405;345406;345407;345408;345409;345410;345411 210431;210432;210433;210434;210435;210436;210437;210438;210439;210440;210441;210442;210443;210444;210445;210446;210447;210448;210449;210450;210451;210452;210453;210454;210455;210456;210457;210458;210459;210460;210461;210462;210463;210464;210465;210466;210467;210468;210469;210470;210471;210472;210473;210474;210475;210476;210477;210478;210479;210480;210481;210482;210483;210484;210485;210486;210487;210488;210489;210490;210491;210492;210493;210494;210495;210496;210497 210440 423 67 SKPEMLIELFR Unmodified 1361.7377 0.73770765 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 3 2 2 2 2 2 2 2 43.087 41.602 2;3 9.309E-06 14258 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 137.01 115.78 14791000000 207470000 244140000 74350000 2997300 3486900 3163500 111090000 94524000 85741000 734020000 646880000 629940000 47189000 51436000 47629000 2208800000 2608400000 2229600000 170040000 167140000 176840000 1335500000 1466700000 1443500000 18587 935 18005 345412;345413;345414;345415;345416;345417;345418;345419;345420;345421;345422;345423;345424;345425;345426;345427;345428;345429;345430;345431;345432;345433;345434;345435;345436;345437;345438;345439;345440;345441;345442;345443;345444;345445;345446;345447;345448;345449;345450;345451;345452;345453;345454;345455;345456 210498;210499;210500;210501;210502;210503;210504;210505;210506;210507;210508;210509;210510;210511;210512;210513;210514;210515;210516;210517;210518;210519;210520;210521;210522;210523;210524;210525;210526;210527;210528;210529;210530;210531;210532;210533;210534;210535;210536;210537 210506 40 SKPIVMER Unmodified 958.52699 0.52698659 1628 P60716 lipA Lipoyl synthase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.96 12.588 2 0.018113 3396 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.324 57.769 334400000 0 9859000 10029000 0 0 0 29908000 24661000 21106000 3038400 2880200 2840100 18819000 16139000 11528000 0 0 0 25080000 25414000 19680000 38675000 41174000 33573000 18588 1628 18006 345457;345458;345459;345460;345461;345462;345463;345464;345465;345466;345467;345468;345469;345470;345471;345472;345473 210538;210539;210540;210541;210542 210538 5 SKRDDDSYDEDVEDDEGVGEVR Unmodified 2528.0423 0.042277923 1882 P77173 zipA Cell division protein ZipA yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 1 20.037 20.122 3;4 0.0037835 6461 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 55.127 55.127 28350000 0 0 0 4419400 3380600 3268100 0 0 0 7259800 6279900 3742700 0 0 0 0 0 0 0 0 0 0 0 0 18589 1882 18007 345474;345475;345476;345477;345478;345479;345480;345481;345482;345483;345484 210543;210544 210544 2 SKSDVFHLGLTK Unmodified 1330.7245 0.72450043 1079 P12758 udp Uridine phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 22.694 22.064 2;3 4.6463E-12 9706 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 198.97 182.13 3647600000 94779000 85895000 94422000 3651600 0 0 682130000 651910000 609480000 10252000 7725900 7739300 249300000 177390000 165370000 1415100 0 0 257560000 267850000 273210000 0 2264900 5258000 18590 1079 18008 345485;345486;345487;345488;345489;345490;345491;345492;345493;345494;345495;345496;345497;345498;345499;345500;345501;345502;345503;345504;345505;345506;345507;345508;345509;345510;345511;345512;345513;345514;345515 210545;210546;210547;210548;210549;210550;210551;210552;210553;210554;210555;210556;210557;210558;210559;210560;210561;210562;210563;210564;210565;210566;210567;210568;210569;210570 210548 26 SKSENLYSAAR Unmodified 1224.6099 0.6098646 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 11.951 12.554 2;3 3.9163E-10 3483 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 219.5 202.03 757820000 50729000 60052000 52956000 4559400 4880700 5070000 67840000 26803000 59896000 22634000 22065000 20131000 42493000 50085000 39033000 5439200 4008900 4704600 71557000 61506000 57887000 7575900 7290400 8622300 18591 1227 18009 345516;345517;345518;345519;345520;345521;345522;345523;345524;345525;345526;345527;345528;345529;345530;345531;345532;345533;345534;345535;345536;345537;345538;345539;345540;345541;345542;345543;345544;345545;345546;345547;345548;345549;345550;345551;345552;345553;345554;345555;345556;345557;345558;345559;345560;345561;345562 210571;210572;210573;210574;210575;210576;210577;210578;210579;210580;210581;210582;210583;210584;210585 210585 14 SKTDELITYLIGNR Unmodified 1621.8675 0.86753585 110 P05458 ptrA Protease 3 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 45.751 44.271 3 0.00051063 20581 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 66.285 63.734 44119000 0 4237600 0 0 0 0 3983900 3291900 3437200 0 0 0 0 3418400 4881000 0 0 0 5598200 9006700 6263900 0 0 0 18592 110 18010 345563;345564;345565;345566;345567;345568;345569;345570;345571 210586;210587;210588 210588 1 SLADHYK Unmodified 832.40792 0.40791731 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.418 12.039 2 0.12356 3149 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 49.59 14.484 149730000 0 15541000 12209000 0 0 0 9649700 14271000 11245000 0 3923500 3426100 12651000 12265000 0 18395000 0 9002400 10479000 9369100 7304400 0 0 0 18593 222 18011 345572;345573;345574;345575;345576;345577;345578;345579;345580;345581;345582;345583;345584;345585 210589 210589 1 SLADHYKFDVEAPWGSLSANVHK Unmodified 2570.2554 0.25538642 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 38.179 37.466 4;5 0.00017288 12857 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 73.672 66.561 66406000 0 0 0 0 0 979210 0 0 0 2875300 2931400 0 0 0 0 25954000 14928000 18738000 0 0 0 0 0 0 18594 222 18012 345586;345587;345588;345589;345590;345591;345592;345593;345594 210590;210591;210592;210593;210594 210594 5 SLADIGEALK Unmodified 1015.555 0.55497548 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.398 33.678 2 0.00031792 16361 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 85.731 66.094 7050900000 1029100000 830040000 711870000 3448800 3418100 3974700 319050000 297620000 0 2821100 2139900 1703800 387530000 411840000 370970000 0 0 0 885120000 942450000 843190000 1342000 1896100 1330200 18595 1013 18013 345595;345596;345597;345598;345599;345600;345601;345602;345603;345604;345605;345606;345607;345608;345609;345610;345611;345612;345613;345614;345615 210595;210596;210597;210598;210599;210600;210601;210602;210603;210604;210605;210606 210597 12 SLADIQQR Unmodified 929.49304 0.49304393 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.95 16.665 2 0.00033509 5484 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 145.04 122.31 755330000 40000000 44527000 0 0 0 0 76491000 82198000 77265000 0 0 7091400 58985000 59310000 55180000 0 0 0 80407000 82393000 88397000 3088700 0 0 18596 294 18014 345616;345617;345618;345619;345620;345621;345622;345623;345624;345625;345626;345627;345628 210607;210608;210609;210610;210611;210612 210610 6 SLADMIK Oxidation (M) 792.40514 0.40514012 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 4 5 4 1 1 5 5 5 1 1 3 5 5 20.517 20.419 2 0.03233 5504 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 71.715 32.896 1595500000 2449900 1565000 0 435680 830390 434710 1721300 0 4877000 138700000 139810000 121360000 0 2013700 3321600 230020000 185510000 201290000 2091900 2414900 0 186230000 190090000 180290000 18597 458 18015 345629;345630;345631;345632;345633;345634;345635;345636;345637;345638;345639;345640;345641;345642;345643;345644;345645;345646;345647;345648;345649;345650;345651;345652;345653;345654;345655;345656;345657;345658;345659;345660;345661;345662;345663;345664;345665;345666;345667;345668;345669;345670;345671;345672;345673;345674;345675;345676;345677;345678;345679;345680;345681;345682 210613;210614;210615;210616;210617;210618;210619;210620;210621;210622;210623;210624;210625;210626;210627;210628;210629;210630;210631;210632;210633;210634;210635;210636;210637;210638;210639;210640;210641;210642;210643;210644;210645;210646;210647;210648;210649;210650 210624 247 38 SLADMIK Unmodified 776.41023 0.4102255 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 29.68 28.373 1;2 0.022706 9461 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 74.415 47.295 40592000000 219060000 251160000 233790000 17809000 16355000 17720000 202260000 211490000 209800000 2225000000 2171600000 2323400000 194000000 199840000 184520000 7724900000 6413100000 7075100000 286290000 298150000 281000000 3424500000 3350500000 3060300000 18598 458 18015 345683;345684;345685;345686;345687;345688;345689;345690;345691;345692;345693;345694;345695;345696;345697;345698;345699;345700;345701;345702;345703;345704;345705;345706;345707;345708;345709;345710;345711;345712;345713;345714;345715;345716;345717;345718;345719;345720;345721;345722;345723;345724;345725;345726;345727;345728;345729;345730 210651;210652;210653;210654;210655;210656;210657;210658;210659;210660;210661;210662;210663;210664;210665;210666;210667;210668;210669;210670;210671;210672;210673;210674;210675;210676;210677;210678;210679;210680;210681;210682;210683 210654 29 SLAEQGVTK Unmodified 931.49746 0.4974606 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.282 12.857 2 0.00018222 3609 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.12 97.509 1129900000 239550000 264540000 256170000 0 0 0 0 5177600 0 0 0 0 29152000 27348000 0 2999300 5030100 812390 99462000 108310000 83559000 0 4245100 3553900 18599 65 18016 345731;345732;345733;345734;345735;345736;345737;345738;345739;345740;345741;345742;345743;345744;345745 210684;210685;210686;210687;210688;210689;210690;210691;210692;210693 210686 10 SLAESFAANFTAELDNAGLAHGTVQWFAAPR Unmodified 3261.5843 0.58432514 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 54.851 53.32 3 2.4539E-25 26522 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 178.5 176.18 245800000 11334000 0 0 0 0 0 45455000 43623000 47148000 0 0 0 0 0 0 0 0 0 5987900 49534000 42722000 0 0 0 18600 62 18017 345746;345747;345748;345749;345750;345751;345752 210694 210694 1 SLAHLLMMNDVVPVWLKPTR Unmodified 2319.2595 0.25954929 1602 P52095 ldcC Lysine decarboxylase, constitutive yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 51.909 50.549 4 0.010468 24792 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.819 51.195 68337000 10697000 10044000 8607200 0 0 0 11568000 8412600 8262200 2405200 1836800 1778200 0 2433400 2292700 0 0 0 0 0 0 0 0 0 18601 1602 18018 345753;345754;345755;345756;345757;345758;345759;345760;345761;345762;345763 210695 210695 0 SLAHVVNILDPDVIVLGGGMSNVDR Unmodified 2589.3585 0.35847129 1231 P23917 mak Fructokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.247 51.807 3 3.6876E-10 25304 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.46 113.31 523620000 62843000 63202000 45233000 0 0 0 35233000 50012000 48689000 0 0 0 31793000 34478000 35955000 0 0 0 41384000 34574000 40229000 0 0 0 18602 1231 18019 345764;345765;345766;345767;345768;345769;345770;345771;345772;345773;345774;345775 210696;210697;210698;210699;210700;210701;210702;210703;210704;210705;210706;210707 210704 12 SLAICTLLDK Unmodified 1132.6162 0.61619553 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.793 40.095 2 0.0012698 19927 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 85.731 60.808 436410000 35313000 35247000 29861000 0 0 0 29653000 33039000 31396000 0 0 0 39967000 35954000 39829000 0 0 0 43233000 44730000 38190000 0 0 0 18603 537 18020 345776;345777;345778;345779;345780;345781;345782;345783;345784;345785;345786;345787 210708;210709 210709 1 SLAICTLLDKPSR Unmodified 1472.8021 0.80209882 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.408 32.959 2;3 9.8166E-13 16017 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 214.82 199.56 3079600000 232590000 226870000 192170000 0 0 0 244630000 241280000 216920000 0 0 0 304500000 277690000 239070000 0 0 0 285450000 301100000 317360000 0 0 0 18604 537 18021 345788;345789;345790;345791;345792;345793;345794;345795;345796;345797;345798;345799;345800;345801;345802;345803;345804;345805;345806;345807;345808;345809;345810;345811 210710;210711;210712;210713;210714;210715;210716;210717;210718;210719;210720;210721;210722;210723;210724;210725;210726;210727;210728;210729;210730;210731 210715 21 SLAISLILQDTSR Unmodified 1415.7984 0.79839365 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 50.37 48.933 2 4.5108E-07 19649 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 147.62 137.67 20942000 0 0 0 2218800 2478100 2198500 0 0 0 2929200 3136000 4345400 0 0 0 0 0 0 0 0 0 0 1391600 2244400 18605 161 18022 345812;345813;345814;345815;345816;345817;345818;345819 210732;210733;210734;210735;210736 210732 5 SLALMQQTEQMAR Unmodified 1505.733 0.73303298 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.005 31.376 2 7.5529E-13 14891 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 198.72 172.78 145940000 0 3483200 0 0 937980 859620 9474800 12325000 12791000 8418300 10167000 10638000 8954400 7986000 7907800 0 1372700 0 12578000 12539000 12430000 3931200 4674200 4471700 18606 143 18023 345820;345821;345822;345823;345824;345825;345826;345827;345828;345829;345830;345831;345832;345833;345834;345835;345836;345837;345838 210737;210738;210739;210740;210741;210742;210743;210744;210745;210746 210745 10 SLATAAGAVAGGVAGQGVQSAMNK Unmodified 2115.0743 0.074250936 478 P0A905 slyB Outer membrane lipoprotein SlyB yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 37.415 35.665 2;3 5.1366E-50 17241 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 317.26 311.98 2132600000 15395000 13401000 10267000 39921000 48186000 44845000 78501000 77588000 77526000 234060000 197960000 205630000 98878000 94063000 80277000 64925000 53856000 50161000 121140000 111200000 109420000 103310000 96096000 106030000 18607 478 18024 345839;345840;345841;345842;345843;345844;345845;345846;345847;345848;345849;345850;345851;345852;345853;345854;345855;345856;345857;345858;345859;345860;345861;345862;345863;345864;345865;345866;345867;345868;345869;345870;345871;345872;345873;345874;345875;345876;345877;345878;345879;345880;345881;345882 210747;210748;210749;210750;210751;210752;210753;210754;210755;210756;210757;210758;210759;210760;210761;210762;210763;210764;210765;210766;210767;210768;210769;210770;210771;210772;210773;210774;210775;210776;210777;210778;210779;210780;210781;210782;210783;210784 210768 38 SLATAAGAVAGGVAGQGVQSAMNK Oxidation (M) 2131.0692 0.069165558 478 P0A905 slyB Outer membrane lipoprotein SlyB yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 33.139 31.013 3 5.4902E-05 11853 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 84.327 75.044 47238000 0 0 0 0 0 0 0 6592000 0 13699000 9893800 8815200 0 0 0 0 0 0 0 0 0 3932900 0 4305100 18608 478 18024 345883;345884;345885;345886;345887;345888 210785;210786;210787 210787 285 3 SLATELR Unmodified 788.43922 0.43921744 260 P0A6L7 uxaB Altronate oxidoreductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 16.17 16.425 2 0.034366 4678 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 65.897 26.876 115610000 0 0 0 0 0 0 7834900 5994900 7742500 23871000 22047000 17094000 0 0 0 7478800 7109600 6826900 2124800 0 0 2803500 1562300 3114900 18609 260 18025 345889;345890;345891;345892;345893;345894;345895;345896;345897;345898;345899;345900;345901 210788;210789;210790 210789 3 SLATLAEDALAK Unmodified 1201.6554 0.65541781 1967 Q46925 csdA Cysteine desulfurase CsdA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.125 41.523 2 3.8004E-05 20322 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.06 93.944 122160000 12030000 10612000 10073000 0 548840 447770 9724800 7804400 8387700 0 0 518840 6738600 8050000 8005000 0 0 0 13374000 12038000 13806000 0 0 0 18610 1967 18026 345902;345903;345904;345905;345906;345907;345908;345909;345910;345911;345912;345913;345914;345915;345916 210791;210792;210793;210794;210795;210796;210797;210798 210795 8 SLAVEYAQSGIR Unmodified 1292.6725 0.67246486 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.507 26.182 2 2.1981E-08 11448 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 168.83 133.38 979170000 90012000 85927000 80222000 0 0 0 83640000 86373000 84086000 1525500 1387500 0 69920000 72242000 65531000 0 0 0 94282000 83669000 78984000 1364100 0 0 18611 1471 18027 345917;345918;345919;345920;345921;345922;345923;345924;345925;345926;345927;345928;345929;345930;345931 210799;210800;210801;210802;210803;210804;210805;210806;210807;210808;210809;210810 210808 12 SLAVLDTVFTALLQKPHGR Unmodified 2065.1684 0.16840932 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.43 51.99 4 4.0591E-14 25511 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 115.98 115.98 476440000 52854000 52690000 57777000 0 0 0 44528000 45917000 40046000 0 0 0 27859000 31182000 27698000 0 0 0 36157000 27428000 32301000 0 0 0 18612 164 18028 345932;345933;345934;345935;345936;345937;345938;345939;345940;345941;345942;345943 210811;210812;210813;210814;210815;210816;210817;210818;210819;210820;210821;210822 210818 12 SLAVVIK Unmodified 728.47963 0.47962569 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 2 1 2 1 22.847 22.309 2 0.015808 9530 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 81.381 52.853 1060000000 44182000 37276000 45322000 0 0 0 117880000 109590000 111990000 7377300 0 8003200 111020000 80576000 92743000 0 0 0 90274000 105700000 98030000 0 0 0 18613 1468 18029 345944;345945;345946;345947;345948;345949;345950;345951;345952;345953;345954;345955;345956;345957;345958;345959;345960;345961 210823;210824;210825;210826;210827;210828;210829;210830;210831;210832;210833;210834 210828 12 SLAYAALK Unmodified 835.48035 0.48035398 1743 P69791 chbA N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 22.239 21.754 2 0.045214 9444 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 60.788 28.317 58728000 0 0 0 0 0 0 10314000 11843000 11589000 551140 0 0 0 0 12949000 1963400 919960 1111600 6558400 0 0 0 928490 0 18614 1743 18030 345962;345963;345964;345965;345966;345967;345968;345969;345970;345971;345972 210835;210836;210837;210838 210836 4 SLDCLQR Unmodified 890.428 0.42800083 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 15.674 16.367 2 0.019049 5630 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.593 92.762 618310000 98640000 84712000 90065000 0 0 0 91772000 103310000 89361000 1592100 0 0 13544000 15091000 0 0 0 0 0 16165000 14065000 0 0 0 18615 1316 18031 345973;345974;345975;345976;345977;345978;345979;345980;345981;345982;345983 210839;210840;210841 210839 0 SLDDAQIALAVINTTYASQIGLTPAK Unmodified 2673.4225 0.42251133 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.343 53.964 3 4.5362E-31 21799 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 195.97 193.72 491730000 47216000 37238000 35224000 17539000 23236000 20280000 28725000 24485000 25413000 28017000 27347000 27007000 14067000 15300000 16062000 0 0 8045700 26329000 28953000 25848000 0 7214800 8181200 18616 1321 18032 345984;345985;345986;345987;345988;345989;345990;345991;345992;345993;345994;345995;345996;345997;345998;345999;346000;346001;346002;346003;346004 210842;210843;210844;210845;210846;210847;210848;210849;210850 210843 9 SLDDFLI Unmodified 821.41709 0.41708502 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 55.894 55.949 2 0.07034 21983 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 59.32 59.32 19060000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13474000 3054700 2532000 0 0 0 0 0 0 18617 729 18033 346005;346006;346007 210851 210851 1 SLDDFLIK Unmodified 949.51205 0.51204804 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 43.458 41.923 2 0.0019293 20099 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.75 61.746 20347000000 2060700000 1886800000 2001100000 1697900 1602700 1237300 1826400000 1713500000 1578300000 8677900 7805800 8542000 1386000000 1293000000 1235300000 168570000 121020000 116750000 1634100000 1667700000 1620100000 2185500 3160000 2430800 18618 728 18034 346008;346009;346010;346011;346012;346013;346014;346015;346016;346017;346018;346019;346020;346021;346022;346023;346024;346025;346026;346027;346028;346029;346030;346031;346032;346033;346034;346035;346036;346037;346038;346039;346040;346041;346042;346043 210852;210853;210854;210855;210856;210857;210858;210859;210860;210861;210862;210863;210864;210865;210866;210867;210868;210869;210870;210871;210872;210873;210874;210875;210876;210877;210878;210879;210880;210881;210882;210883;210884;210885;210886;210887;210888;210889;210890;210891;210892 210867 41 SLDDFLIKQ Unmodified 1077.5706 0.57062555 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 42.416 40.795 2 2.1003E-05 20092 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.58 133.42 3812300000 240870000 234380000 206670000 8013900 8166300 7106700 196970000 176340000 157170000 41691000 35724000 28057000 154430000 134450000 134090000 499540000 424440000 502800000 183500000 191510000 211000000 12778000 11460000 11120000 18619 728 18035 346044;346045;346046;346047;346048;346049;346050;346051;346052;346053;346054;346055;346056;346057;346058;346059;346060;346061;346062;346063;346064;346065;346066;346067;346068 210893;210894;210895;210896;210897;210898;210899;210900;210901;210902;210903;210904;210905;210906;210907;210908;210909;210910;210911;210912;210913;210914;210915 210901 23 SLDDQFAELK Unmodified 1164.5663 0.56626845 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 34.102 32.462 2 0.00017736 15867 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 123.35 75.781 948470000 85222000 83621000 85534000 6049000 4485100 5093700 94544000 98217000 109500000 6107500 0 4071800 55647000 41953000 51585000 0 0 0 78992000 62859000 59687000 4788600 4471900 6041100 18620 956 18036 346069;346070;346071;346072;346073;346074;346075;346076;346077;346078;346079;346080;346081;346082;346083;346084;346085;346086;346087;346088;346089;346090;346091 210916;210917;210918;210919;210920;210921;210922;210923;210924;210925;210926;210927;210928;210929 210916 14 SLDDQFAELKADDAISEQLAQLK Unmodified 2547.2704 0.27042737 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.441 50.297 3 2.5584E-35 20063 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 204.96 200.98 420030000 0 0 0 53177000 0 53292000 0 0 13946000 34928000 44157000 42588000 0 0 0 0 20577000 18163000 0 15736000 0 47259000 41985000 34223000 18621 956 18037 346092;346093;346094;346095;346096;346097;346098;346099;346100;346101;346102;346103 210930;210931;210932;210933;210934;210935;210936;210937;210938;210939 210934 10 SLDEAQAIK Unmodified 973.50803 0.50802529 721 P0ACD4 iscU Iron-sulfur cluster assembly scaffold protein IscU yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 1 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 15.803 16.391 2 0.00043569 5707 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 110.31 45.058 4272500000 348360000 339360000 286140000 5831100 4991300 4190900 360430000 381820000 353400000 9822300 8939100 6634000 334130000 254470000 252150000 2826700 1999500 3366400 467070000 435810000 398410000 4378100 3432300 4536800 18622 721 18038 346104;346105;346106;346107;346108;346109;346110;346111;346112;346113;346114;346115;346116;346117;346118;346119;346120;346121;346122;346123;346124;346125;346126;346127;346128;346129;346130;346131;346132;346133;346134 210940;210941;210942;210943;210944;210945;210946 210943 4 SLDEGQK Unmodified 775.3712 0.37119746 565 P0A9X9 cspA Cold shock protein CspA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 1 1 1 6.9955 7.8695 2 0.0012711 1261 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.96 91.839 3143400000 65456000 53622000 55153000 0 0 0 616940000 588620000 599290000 0 0 0 144970000 132630000 115680000 0 0 0 282170000 262330000 226520000 0 0 0 18623 565 18039 346135;346136;346137;346138;346139;346140;346141;346142;346143;346144;346145;346146;346147;346148;346149;346150;346151 210947;210948;210949;210950;210951;210952;210953;210954;210955;210956;210957;210958;210959;210960;210961;210962;210963 210948 17 SLDEIKDK Unmodified 946.49713 0.49712625 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 11.892 12.669 2 0.0049138 3497 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.093 55.201 303490000 8640200 121520000 99197000 0 0 0 0 0 42001000 0 0 0 0 0 0 0 0 0 11336000 20796000 0 0 0 0 18624 1007 18040 346152;346153;346154;346155;346156;346157 210964 210964 1 SLDELQDGSQVAVPNDPTNLGR Unmodified 2324.1244 0.12443183 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 2 2 1 2 2 2 2 2 2 1 1 1 1 1 2 2 2 1 1 39.325 37.609 2;3 1.3994E-102 18442 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 349.47 344.39 479830000 23568000 22750000 18746000 14838000 19357000 16552000 14146000 46238000 43340000 35542000 32195000 25127000 16635000 6680800 5971500 4465000 3395000 3411600 38933000 40162000 42296000 0 2264800 3212200 18625 1321 18041 346158;346159;346160;346161;346162;346163;346164;346165;346166;346167;346168;346169;346170;346171;346172;346173;346174;346175;346176;346177;346178;346179;346180;346181;346182;346183;346184;346185;346186;346187;346188;346189;346190;346191;346192 210965;210966;210967;210968;210969;210970;210971;210972;210973;210974;210975;210976;210977;210978;210979;210980;210981;210982;210983;210984;210985;210986 210982 22 SLDELVQR Unmodified 958.50836 0.50835964 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.921 23.932 2 0.029942 10559 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.616 43.431 855430000 72052000 75075000 68415000 0 0 0 79375000 80517000 83817000 0 0 0 61574000 49282000 53664000 0 0 0 84250000 75997000 71411000 0 0 0 18626 111 18042 346193;346194;346195;346196;346197;346198;346199;346200;346201;346202;346203;346204 210987;210988 210987 0 SLDEVRDDIAAK Unmodified 1330.6729 0.67285879 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 20.647 20.872 2;3 4.5295E-08 8307 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 157.68 114.24 702780000 26364000 24069000 25160000 9647800 12833000 8147000 51895000 53328000 52140000 0 25933000 26464000 46524000 42393000 37675000 7117700 4138600 3541300 65766000 62744000 68819000 18178000 14794000 15112000 18627 819 18043 346205;346206;346207;346208;346209;346210;346211;346212;346213;346214;346215;346216;346217;346218;346219;346220;346221;346222;346223;346224;346225;346226;346227;346228;346229;346230;346231;346232;346233;346234;346235;346236;346237;346238;346239;346240;346241;346242;346243;346244;346245;346246;346247;346248 210989;210990;210991;210992;210993;210994;210995;210996;210997;210998;210999;211000;211001;211002 210995 14 SLDINPFSPIGVDEQQVR Unmodified 2013.0167 0.016719282 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 50.677 49.234 2 4.3833E-17 22956 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 197.56 175.36 272260000 0 0 60412000 0 0 0 49298000 56114000 59072000 0 0 0 0 0 47359000 0 0 0 0 0 0 0 0 0 18628 289 18044 346249;346250;346251;346252;346253;346254 211003;211004;211005;211006;211007;211008 211008 6 SLDINQIALHQLIK Unmodified 1604.925 0.92499115 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 1 1 2 2 2 2 1 2 2 1 2 2 2 43.132 41.471 2;3 2.3289E-14 16309 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 211.46 197.02 1768800000 80892000 81687000 95823000 976880 847910 597590 106200000 101620000 90044000 7900300 0 10168000 85544000 79175000 79191000 0 0 3834900 119100000 133230000 92772000 193470000 201530000 204220000 18629 1433 18045 346255;346256;346257;346258;346259;346260;346261;346262;346263;346264;346265;346266;346267;346268;346269;346270;346271;346272;346273;346274;346275;346276;346277;346278;346279;346280;346281;346282;346283;346284;346285;346286;346287;346288;346289;346290 211009;211010;211011;211012;211013;211014;211015;211016;211017;211018;211019;211020;211021;211022;211023;211024;211025;211026;211027;211028;211029;211030;211031;211032 211018 24 SLDLDSIIAEVK Unmodified 1301.7078 0.70784731 11 CON__P04264 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 4 1 2 2 2 2 2 2 53.264 52.197 2;3 1.1726E-11 19621 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 185.14 159.2 2948100000 0 0 0 66855000 59809000 69212000 0 0 0 556850000 519780000 494130000 0 0 804390 87214000 78715000 120820000 0 0 0 304630000 301290000 288010000 + 18630 11 18046 346291;346292;346293;346294;346295;346296;346297;346298;346299;346300;346301;346302;346303;346304;346305;346306;346307;346308;346309;346310;346311;346312;346313;346314;346315;346316;346317 211033;211034;211035;211036;211037;211038;211039;211040;211041;211042;211043;211044;211045;211046;211047;211048;211049;211050;211051;211052;211053;211054;211055;211056;211057 211037 24 SLDSNVIASFEQPFSHHGGTK Unmodified 2257.0764 0.076359426 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 38.608 36.901 3;4 7.4354E-11 17778 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.25 122.41 878450000 6179800 6236700 5915000 0 0 0 109450000 99241000 111390000 0 0 0 74276000 78267000 68619000 0 0 0 121490000 103610000 93777000 0 0 0 18631 785 18047 346318;346319;346320;346321;346322;346323;346324;346325;346326;346327;346328;346329;346330;346331;346332;346333;346334;346335;346336;346337;346338 211058;211059;211060;211061;211062;211063;211064;211065;211066;211067;211068;211069;211070;211071;211072 211066 13 SLDVLEGYLVDGTLK Unmodified 1620.8611 0.86105349 711 P0ACA1 yibF Uncharacterized GST-like protein YibF yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 53.651 52.222 2 1.8672E-08 25489 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.73 117.34 301330000 42037000 36172000 43590000 509080 0 0 17029000 18512000 18669000 0 0 0 13308000 15519000 14649000 0 0 0 27558000 26965000 26813000 0 0 0 18632 711 18048 346339;346340;346341;346342;346343;346344;346345;346346;346347;346348;346349;346350;346351 211073;211074;211075;211076;211077;211078;211079;211080 211079 0 SLEANNGHDGTWIAHPGLADTAMAVFNDILGSR Unmodified 3449.6423 0.64225072 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 1 1 1 2 1 54.958 53.477 3;4 8.7329E-69 26470 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 258.55 256.67 1685500000 443540000 422710000 400570000 0 0 0 66427000 67237000 67796000 0 0 0 45103000 25750000 22076000 0 0 0 37267000 50393000 36628000 0 0 0 18633 195 18049 346352;346353;346354;346355;346356;346357;346358;346359;346360;346361;346362;346363;346364;346365;346366;346367;346368;346369;346370;346371 211081;211082;211083;211084;211085;211086 211084 6 SLEAPVTESLLK Unmodified 1285.7129 0.71293269 1834 P76216 astB N-succinylarginine dihydrolase yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 36.843 35.404 2 1.7973E-06 17174 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 146.11 137.89 119640000 40382000 42028000 37227000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18634 1834 18050 346372;346373;346374 211087;211088 211087 2 SLECVEYPELGMEAIWK Unmodified 2052.9537 0.95365002 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 52.685 51.257 2;4 1.061E-13 25614 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 158.25 158.25 847960000 133110000 122630000 113990000 0 0 0 18469000 26065000 25072000 0 0 4214200 46317000 42166000 36529000 0 0 0 119200000 84671000 66484000 2844600 3883000 2305700 18635 696 18051 346375;346376;346377;346378;346379;346380;346381;346382;346383;346384;346385;346386;346387;346388;346389;346390;346391 211089;211090;211091;211092;211093;211094;211095;211096;211097;211098;211099;211100 211095 10 SLEDTKNR Unmodified 961.48287 0.48287317 16 CON__P35527 yes yes 0 0 1 By MS/MS By matching 1 1 10.341 10.497 2 0.031958 1923 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 66.429 47.699 15725000 0 0 0 0 0 0 0 0 0 9057700 0 6667000 0 0 0 0 0 0 0 0 0 0 0 0 + 18636 16 18052 346392;346393 211101 211101 1 SLEEIIR Unmodified 858.48108 0.48108226 1008 P0AGD3 sodB Superoxide dismutase [Fe] yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.383 26.087 2 0.0015237 12200 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.48 91.928 5814500000 642000000 595700000 581180000 2160500 1926400 3478700 539760000 613350000 552370000 0 2620900 2460500 358350000 336880000 313800000 0 0 0 455310000 406290000 405840000 974840 0 0 18637 1008 18053 346394;346395;346396;346397;346398;346399;346400;346401;346402;346403;346404;346405;346406;346407;346408;346409;346410;346411 211102;211103;211104;211105;211106;211107;211108;211109;211110;211111;211112;211113;211114;211115 211104 14 SLEGNTVLQDTLQK Unmodified 1544.8046 0.80460124 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.893 31.277 2 2.4582E-07 12326 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 134.13 125.64 164620000 5795000 2545100 3986500 14411000 15900000 16594000 5570600 5935300 5831900 6786800 5633900 6628500 5636500 4065400 5706000 0 0 0 8107200 8599400 8381900 8564800 9053200 10886000 18638 1899 18054 346412;346413;346414;346415;346416;346417;346418;346419;346420;346421;346422;346423;346424;346425;346426;346427;346428;346429;346430;346431;346432 211116;211117;211118;211119;211120;211121;211122;211123;211124;211125 211116 1 SLEHAYSK Unmodified 933.4556 0.45559579 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 10.644 11.45 2 0.01238 2788 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.213 35.11 21976000 15504000 0 0 0 0 0 0 0 0 0 0 0 0 0 3290000 0 0 0 3181700 0 0 0 0 0 18639 118 18055 346433;346434;346435 211126 211126 1 SLEHEVTLVDDTLAR Unmodified 1696.8632 0.86317875 956 P0AFM6 pspA Phage shock protein A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 2 1 2 2 2 1 1 1 1 2 2 2 1 2 35.697 34.006 2;3 1.8822E-20 16259 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 218.62 215.09 1214500000 164700000 148580000 123380000 22205000 19667000 19421000 148140000 0 0 52422000 50074000 51051000 0 0 0 21645000 19597000 23019000 65360000 106360000 80000000 34797000 29011000 35061000 18640 956 18056 346436;346437;346438;346439;346440;346441;346442;346443;346444;346445;346446;346447;346448;346449;346450;346451;346452;346453;346454;346455;346456;346457;346458;346459;346460;346461;346462;346463 211127;211128;211129;211130;211131;211132;211133;211134;211135;211136;211137;211138;211139;211140;211141 211137 13 SLELPAIVGTGSVTSQVK Unmodified 1784.9884 0.98837927 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 45.157 43.627 2;3 4.0281E-17 21228 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 194.12 190.45 4675700000 299930000 246320000 238800000 5441500 4210000 5052300 524330000 460230000 460250000 11256000 9759500 7962000 409730000 380190000 364970000 3784600 1695000 0 408220000 434500000 385620000 5040500 4440500 3967500 18641 192 18057 346464;346465;346466;346467;346468;346469;346470;346471;346472;346473;346474;346475;346476;346477;346478;346479;346480;346481;346482;346483;346484;346485;346486;346487;346488;346489;346490;346491;346492;346493;346494;346495;346496;346497;346498;346499;346500;346501;346502;346503;346504 211142;211143;211144;211145;211146;211147;211148;211149;211150;211151;211152;211153;211154;211155;211156;211157;211158;211159;211160;211161;211162;211163;211164;211165;211166;211167;211168;211169;211170;211171;211172;211173 211156 32 SLEMIAENGPDEFYK Unmodified 1741.7869 0.78690227 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.837 40.138 2 1.9969E-07 19509 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 132.03 131.18 99009000 10181000 8091200 10667000 0 0 0 10529000 8425600 8767000 0 0 0 6490900 5628700 4891400 0 0 0 9284400 7135600 8918200 0 0 0 18642 1155 18058 346505;346506;346507;346508;346509;346510;346511;346512;346513;346514;346515;346516 211174;211175;211176 211175 3 SLENAPDDVK Unmodified 1086.5193 0.51931826 1582 P45807 ybaM Uncharacterized protein YbaM yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.401 15.166 2 0.00035677 5036 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.7 135.17 158410000 11462000 8651600 12837000 0 0 0 17149000 20980000 15014000 0 0 0 10303000 9963500 12838000 0 0 0 13912000 12549000 12749000 0 0 0 18643 1582 18059 346517;346518;346519;346520;346521;346522;346523;346524;346525;346526;346527;346528 211177;211178 211177 1 SLEPVVR Unmodified 798.45995 0.45995289 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.233 17.944 2 0.0043665 6743 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 104.11 95.957 981260000 79273000 80052000 80156000 0 0 561010 143170000 0 128690000 0 0 0 78174000 61885000 71775000 0 0 0 87080000 91480000 78967000 0 0 0 18644 1215 18060 346529;346530;346531;346532;346533;346534;346535;346536;346537;346538;346539;346540 211179;211180;211181;211182;211183;211184;211185 211179 7 SLEQYFGR Unmodified 998.48214 0.48214489 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.146 29.752 2 0.00030221 11311 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 146.94 137.47 5204300000 701930000 659290000 599480000 19814000 21276000 21273000 236910000 215320000 227260000 63170000 48921000 57640000 279800000 260490000 266440000 33167000 21606000 19790000 464630000 437990000 452370000 33208000 32097000 30424000 18645 378 18061 346541;346542;346543;346544;346545;346546;346547;346548;346549;346550;346551;346552;346553;346554;346555;346556;346557;346558;346559;346560;346561;346562;346563;346564 211186;211187;211188;211189;211190;211191;211192;211193;211194;211195;211196;211197;211198;211199;211200;211201;211202 211191 17 SLETGNFRPVGETDSEK Unmodified 1864.8803 0.88028538 1973 Q47147 yafJ Putative glutamine amidotransferase YafJ yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 20.792 21.149 3 7.949E-07 8648 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 83.418 74.561 124890000 19103000 23562000 10506000 0 0 0 10747000 8330700 10486000 0 0 0 8625400 0 5439400 0 0 0 8009500 8470800 11608000 0 0 0 18646 1973 18062 346565;346566;346567;346568;346569;346570;346571;346572;346573;346574;346575 211203;211204 211204 2 SLFDGTLQGIHR Unmodified 1342.6993 0.69934831 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 1 1 1 2 2 2 2 2 2 1 34.102 32.658 2;3 1.2903E-11 15465 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 218.48 215.22 2595200000 603110000 602810000 592590000 2484500 3599100 4409300 5791600 8347200 4953300 0 0 0 53048000 47206000 52897000 0 0 0 201030000 213120000 198800000 0 966820 0 18647 238 18063 346576;346577;346578;346579;346580;346581;346582;346583;346584;346585;346586;346587;346588;346589;346590;346591;346592;346593;346594;346595;346596;346597;346598;346599;346600;346601 211205;211206;211207;211208;211209;211210;211211;211212;211213;211214;211215;211216;211217;211218 211210 14 SLFLATGDVLPLNEK Unmodified 1615.8821 0.88212328 1917 P77554 yahJ Uncharacterized protein YahJ yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 50.539 49.133 2 7.9045E-09 24240 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.06 135.64 39628000 12633000 11709000 15286000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18648 1917 18064 346602;346603;346604 211219;211220 211219 2 SLFMGYATPK Unmodified 1113.5529 0.55286699 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.088 32.549 2 7.0119E-05 15746 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 133.23 124.02 161460000 0 0 0 0 0 0 0 21119000 25767000 8655100 10721000 9521900 14887000 12867000 14329000 4105600 0 1920000 0 12681000 16986000 2822400 2292300 2786900 18649 1836 18065 346605;346606;346607;346608;346609;346610;346611;346612;346613;346614;346615;346616;346617;346618;346619 211221;211222;211223;211224;211225 211222 4 SLFTVSVGGQPK Unmodified 1218.6608 0.66083754 1150 P18335 argD Acetylornithine/succinyldiaminopimelate aminotransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 33.329 32.004 2 0.010552 15107 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 61.65 56.866 61620000 11366000 10853000 10232000 0 0 0 0 0 0 0 0 0 0 4891600 0 0 0 0 8589400 10271000 5416600 0 0 0 18650 1150 18066 346620;346621;346622;346623;346624;346625;346626 211226;211227 211227 1 SLGALSATAK Unmodified 917.5182 0.51819605 1553 P42588 patA Putrescine aminotransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 17.232 17.902 2 0.029408 6739 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 57.55 33.046 48125000 3564200 0 2531100 0 0 0 12079000 13194000 12136000 0 0 0 0 1167200 1060100 0 0 0 0 2393700 0 0 0 0 18651 1553 18067 346627;346628;346629;346630;346631;346632;346633;346634 211228;211229;211230 211228 3 SLGCSNIDYLVPNR Unmodified 1606.7773 0.77734063 1190 P21893 recJ Single-stranded-DNA-specific exonuclease RecJ yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.278 35.418 2 2.0888E-05 17412 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.83 105.88 64388000 6553400 5425300 0 0 0 0 0 6560600 7646900 2588400 2100000 2561800 3513400 3996600 4531200 0 0 0 7388200 6014300 5507900 0 0 0 18652 1190 18068 346635;346636;346637;346638;346639;346640;346641;346642;346643;346644;346645;346646;346647;346648 211231;211232;211233;211234;211235;211236 211233 6 SLGDITR Unmodified 760.40792 0.40791731 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.337 17.156 2 0.0022589 5974 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 115.46 72.74 939970000 239240000 251420000 209060000 1089200 0 0 0 62874000 57098000 0 0 0 12790000 10968000 10457000 0 0 0 26003000 27047000 31917000 0 0 0 18653 1254 18069 346649;346650;346651;346652;346653;346654;346655;346656;346657;346658;346659;346660 211237;211238;211239;211240;211241 211238 5 SLGELVK Unmodified 744.43815 0.43815481 1106 P15078 cstA Carbon starvation protein A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 19.68 20.147 2 0.080493 7532 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 57.463 1.7874 553470000 125680000 61163000 0 0 0 0 71911000 1549900 65969000 0 0 0 36895000 33784000 38688000 0 0 0 36585000 40811000 40434000 0 0 0 18654 1106 18070 346661;346662;346663;346664;346665;346666;346667;346668;346669;346670;346671 211242 211242 1 SLGEQALGAFEDTR Unmodified 1492.7158 0.71578623 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 38.693 37.063 3 0.010979 17370 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 46.319 43.452 24138000 0 0 0 0 0 0 0 0 3106400 0 0 0 3700700 3440600 2759500 0 0 0 3097500 3680500 4353300 0 0 0 18655 193 18071 346672;346673;346674;346675;346676;346677;346678 211243 211243 1 SLGINIELEDE Unmodified 1230.598 0.59796251 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 4 4 4 1 1 5 5 5 51.488 50.07 1;2 1.1062E-07 19748 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 176.33 170.58 1542000000 5235800 2665700 2025000 942750 840340 758960 12506000 6412900 7470900 218880000 186420000 190930000 0 0 0 0 0 0 1572000 0 8010100 259930000 317280000 320130000 18656 463 18072 346679;346680;346681;346682;346683;346684;346685;346686;346687;346688;346689;346690;346691;346692;346693;346694;346695;346696;346697;346698;346699;346700;346701;346702;346703;346704;346705;346706;346707;346708;346709;346710;346711;346712;346713;346714;346715;346716;346717;346718;346719 211244;211245;211246;211247;211248;211249;211250;211251;211252;211253;211254;211255;211256;211257;211258;211259;211260;211261;211262;211263;211264;211265;211266;211267;211268;211269;211270;211271;211272;211273;211274;211275;211276 211273 30 SLGIPVIVTDHHLPGDTLPAAEAIINPNLR Unmodified 3142.7139 0.71388275 1190 P21893 recJ Single-stranded-DNA-specific exonuclease RecJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 51.562 50.307 4 0.1643 23529 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 11.819 9.6924 121700000 11407000 13494000 0 0 0 0 9487200 12834000 0 0 0 2006600 16932000 10269000 7658400 0 0 0 10350000 13758000 13501000 0 0 0 18657 1190 18073 346720;346721;346722;346723;346724;346725;346726;346727;346728;346729;346730 211277 211277 1 SLGITNPEEIDR Unmodified 1342.6729 0.67285879 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.445 27.948 2 3.3672E-05 10308 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 130.94 123.81 2324600000 282620000 280590000 270110000 6080500 5801400 5997400 240750000 226840000 221380000 12691000 10648000 9481400 126420000 132860000 134440000 0 0 0 105210000 99699000 93591000 19907000 20233000 19229000 18658 1653 18074 346731;346732;346733;346734;346735;346736;346737;346738;346739;346740;346741;346742;346743;346744;346745;346746;346747;346748;346749;346750;346751 211278;211279;211280;211281;211282;211283;211284 211280 7 SLGITNPEEIDRYSLR Unmodified 1861.9534 0.95339074 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 35.76 33.791 3 0.00012883 12925 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 58.09 54.65 44655000 0 0 0 3797200 3107700 4504400 0 0 0 0 3140500 3707700 0 0 0 0 0 0 0 0 0 8200900 8446500 9750200 18659 1653 18075 346752;346753;346754;346755;346756;346757;346758;346759 211285;211286;211287;211288 211285 4 SLGLISADSDDVTYIAADEATK Unmodified 2254.0853 0.085252357 1870 P76541 eutL Ethanolamine utilization protein EutL yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 47.215 45.923 2 7.5105E-08 22368 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.96 82.881 20637000 7135100 4669500 5616200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3215900 0 0 0 0 0 18660 1870 18076 346760;346761;346762;346763 211289 211289 0 SLGLLHEDVMTVTGSTLK Unmodified 1899.9976 0.99756374 1531 P39358 yjhG Uncharacterized protein YjhG yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 14.512 15.148 3 0.16003 4719 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 9.1638 0 22401000 0 0 0 0 0 0 0 0 0 0 0 0 3611400 2638300 2581400 0 1222700 2490800 2336800 3892400 3627300 0 0 0 18661 1531 18077 346764;346765;346766;346767;346768;346769;346770;346771 211290 211290 1 SLGNFFTVR Unmodified 1039.5451 0.5450795 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.62 37.945 2 1.2598E-05 18974 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.2 152.79 415110000 37767000 34380000 30538000 0 0 416600 38715000 31331000 34889000 0 0 0 23447000 28882000 26046000 0 0 0 40818000 42249000 45629000 0 0 0 18662 1188 18078 346772;346773;346774;346775;346776;346777;346778;346779;346780;346781;346782;346783;346784 211291;211292;211293;211294;211295;211296;211297;211298;211299;211300;211301;211302 211291 12 SLGQFNLDGINPAPR Unmodified 1597.8213 0.82125436 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 4 2 2 4 4 4 3 3 4 4 3 3 1 1 1 4 4 4 2 2 2 42.123 40.338 2;3 1.252E-68 20209 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 321.23 311.23 15631000000 1202700000 1192300000 1119300000 89260000 83278000 80892000 1327000000 1401100000 1317900000 435000000 385150000 335470000 856410000 851290000 818500000 42262000 31193000 25820000 1231200000 1261300000 1189100000 125460000 116120000 113050000 18663 293 18079 346785;346786;346787;346788;346789;346790;346791;346792;346793;346794;346795;346796;346797;346798;346799;346800;346801;346802;346803;346804;346805;346806;346807;346808;346809;346810;346811;346812;346813;346814;346815;346816;346817;346818;346819;346820;346821;346822;346823;346824;346825;346826;346827;346828;346829;346830;346831;346832;346833;346834;346835;346836;346837;346838;346839;346840;346841;346842;346843;346844;346845;346846;346847;346848;346849;346850;346851;346852;346853;346854;346855 211303;211304;211305;211306;211307;211308;211309;211310;211311;211312;211313;211314;211315;211316;211317;211318;211319;211320;211321;211322;211323;211324;211325;211326;211327;211328;211329;211330;211331;211332;211333;211334;211335;211336;211337;211338;211339;211340;211341;211342;211343;211344;211345;211346;211347;211348;211349;211350;211351;211352;211353;211354;211355;211356;211357;211358;211359;211360 211314 53 SLHLNGPIVDK Unmodified 1191.6612 0.66117189 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 21.092 21.427 2;3 3.5005E-10 8793 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 215.83 179.07 1238300000 57398000 38710000 39266000 0 0 0 169260000 145790000 155270000 0 0 0 109600000 91298000 101010000 0 0 0 117790000 113590000 99276000 0 0 0 18664 167 18080 346856;346857;346858;346859;346860;346861;346862;346863;346864;346865;346866;346867;346868;346869;346870;346871;346872;346873;346874;346875;346876;346877;346878;346879 211361;211362;211363;211364;211365;211366;211367;211368;211369;211370;211371;211372;211373;211374;211375;211376;211377;211378;211379;211380;211381;211382;211383;211384 211366 24 SLHTLFGDK Unmodified 1016.5291 0.52909508 9 CON__P02768-1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.623 21.355 2 0.056028 7339 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 57.708 36.18 27416000 0 0 0 1558800 0 1727700 0 1603400 0 5295900 3732700 3587400 0 0 0 0 0 0 0 0 0 3726800 3176500 3006800 + 18665 9 18081 346880;346881;346882;346883;346884;346885;346886;346887;346888 211385 211385 0 SLHWQALLTAR Unmodified 1294.7146 0.71460444 1976 Q47679 yafV Hydrolase YafV yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 36.416 34.85 3 0.00011711 17119 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 97.163 88.433 56078000 5831600 9291700 6584500 0 0 0 7307300 5735100 5314100 0 0 0 2737700 3604700 1922300 0 0 0 3640500 4108300 0 0 0 0 18666 1976 18082 346889;346890;346891;346892;346893;346894;346895;346896;346897;346898;346899 211386;211387;211388;211389;211390 211388 5 SLIADEDNPNLK Unmodified 1327.662 0.66195975 719 P0ACC3 erpA Iron-sulfur cluster insertion protein ErpA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.359 23.441 2 1.1427E-11 8502 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 185.6 174.38 2121400000 0 288060000 265620000 11067000 12704000 11721000 177770000 183540000 162460000 18770000 16521000 17648000 152700000 137890000 159280000 4200800 3801500 4308400 233850000 0 212370000 14506000 16528000 16086000 18667 719 18083 346900;346901;346902;346903;346904;346905;346906;346907;346908;346909;346910;346911;346912;346913;346914;346915;346916;346917;346918;346919;346920;346921 211391;211392;211393;211394;211395;211396;211397;211398;211399;211400;211401;211402;211403;211404;211405;211406 211394 16 SLIAGHMTEIMQLLNLDLADDSLMETPHR Unmodified 3263.5989 0.59885427 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.957 53.517 4 2.398E-08 26486 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 108.5 106.77 1483700000 239710000 200650000 172140000 8633300 10514000 13079000 62801000 72992000 0 10077000 14529000 12602000 90989000 94255000 75561000 0 0 0 134510000 113260000 132850000 0 12762000 11752000 18668 279 18084 346922;346923;346924;346925;346926;346927;346928;346929;346930;346931;346932;346933;346934;346935;346936;346937;346938;346939;346940 211407;211408;211409;211410;211411;211412 211411 6 SLIASTLYR Unmodified 1022.576 0.57604528 425 P0A8F4 udk Uridine kinase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.066 29.601 2 1.0203E-07 11294 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 183.24 178.88 352690000 22289000 23632000 0 7800900 9303600 7843200 31716000 39903000 31593000 29412000 32456000 31245000 0 0 0 9879600 7834400 9914400 0 0 0 19304000 19791000 18770000 18669 425 18085 346941;346942;346943;346944;346945;346946;346947;346948;346949;346950;346951;346952;346953;346954;346955;346956;346957 211413;211414;211415;211416;211417;211418;211419;211420;211421;211422;211423 211417 10 SLICNFR Unmodified 908.45382 0.45382165 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 25.614 24.485 2 0.0018969 11240 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.87 112.4 191140000 28754000 26444000 25226000 0 1007600 0 14461000 15447000 17637000 0 0 0 0 0 13024000 0 0 0 16536000 17805000 14800000 0 0 0 18670 1387 18086 346958;346959;346960;346961;346962;346963;346964;346965;346966;346967;346968 211424;211425;211426;211427;211428;211429 211424 6 SLIDSGK Unmodified 718.38612 0.38611924 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.412 14.277 2 0.0028071 4425 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.61 69.691 2200000000 204140000 185560000 169990000 0 0 0 270800000 267190000 237390000 0 0 0 162790000 128220000 107720000 0 0 0 152990000 158910000 154260000 0 0 0 18671 1109 18087 346969;346970;346971;346972;346973;346974;346975;346976;346977;346978;346979;346980 211430;211431;211432;211433 211432 4 SLIDSGKDYVVSMLDSLGK Unmodified 2026.0293 0.029257803 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.954 53.481 3 7.9795E-10 25289 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 93.684 93.324 691110000 83868000 78450000 61682000 0 2211800 0 63393000 59853000 57314000 1956800 0 0 47265000 44919000 41173000 0 0 0 50273000 48011000 50739000 0 0 0 18672 1109 18088 346981;346982;346983;346984;346985;346986;346987;346988;346989;346990;346991;346992;346993;346994 211434;211435;211436;211437;211438;211439;211440;211441;211442;211443;211444 211444 11 SLIEAAAIDGAGPIR Unmodified 1452.7936 0.79364262 1062 P10905 ugpA sn-glycerol-3-phosphate transport system permease protein UgpA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 2 2 2 1 40.077 38.432 2;3 2.3645E-08 18701 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 134.98 111.23 173030000 0 0 0 0 0 0 12370000 10337000 0 0 0 0 14891000 13477000 14839000 0 0 0 35620000 37338000 32611000 0 0 1547000 18673 1062 18089 346995;346996;346997;346998;346999;347000;347001;347002;347003;347004;347005;347006;347007;347008;347009 211445;211446;211447;211448 211445 3 SLIEDSVGK Unmodified 946.49713 0.49712625 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 20.401 20.843 2 0.0034482 6055 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 81.548 23.989 103420000 27016000 25318000 23125000 9243300 9677400 9038100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18674 76 18090 347010;347011;347012;347013;347014;347015 211449;211450;211451 211450 3 SLIEKEGNMKVYMTR Unmodified 1797.9117 0.91172562 1666 P63883 amiC N-acetylmuramoyl-L-alanine amidase AmiC yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 2 1 1 1 1 49.12 47.727 2 0.00083138 23200 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.974 69.222 252460000 27046000 27316000 22046000 0 0 0 15644000 13856000 15758000 0 0 0 30636000 0 0 0 0 0 34171000 34869000 31116000 0 0 0 18675 1666 18091 347016;347017;347018;347019;347020;347021;347022;347023;347024;347025;347026 211452;211453;211454 211454 3 SLIELLPQLPLEQSHLPDAQR Unmodified 2396.3064 0.30635936 199 P09099 xylB Xylulose kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.407 51.967 3 0.001559 25753 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 60.325 57.338 95902000 8183400 9709100 9939200 0 0 0 11753000 16001000 12901000 0 0 0 4169400 5751300 7749900 0 0 0 3567500 3401400 2776100 0 0 0 18676 199 18092 347027;347028;347029;347030;347031;347032;347033;347034;347035;347036;347037;347038 211455;211456 211456 1 SLIGPDGEQYK Unmodified 1205.5928 0.59281755 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.955 22.295 2 5.1559E-05 9523 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 129.1 98.025 2176800000 275560000 265000000 261310000 0 20656000 17121000 131520000 137050000 140240000 39842000 46480000 42263000 84454000 85000000 101780000 44561000 44666000 41877000 103680000 99705000 105560000 30764000 26288000 31458000 18677 546 18093 347039;347040;347041;347042;347043;347044;347045;347046;347047;347048;347049;347050;347051;347052;347053;347054;347055;347056;347057;347058;347059;347060;347061 211457;211458;211459;211460;211461;211462;211463;211464;211465;211466;211467;211468 211464 12 SLIMQYKPTHAAVVFDAK Unmodified 2018.0659 0.065918081 37 P00582 polA DNA polymerase I yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 30.073 29.048 3;4 1.2634E-06 9747 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 94.01 84.098 440080000 37120000 37090000 23826000 0 1125400 1119700 30478000 28133000 34393000 0 0 0 19308000 23867000 20572000 11612000 30407000 31366000 24216000 51496000 33955000 0 0 0 18678 37 18094 347062;347063;347064;347065;347066;347067;347068;347069;347070;347071;347072;347073;347074;347075;347076;347077;347078;347079;347080;347081 211469;211470;211471;211472;211473;211474;211475;211476;211477;211478;211479;211480;211481;211482;211483;211484 211469 16 SLIQTIGR Unmodified 886.52362 0.52361577 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.102 24.105 2 0.0028521 10492 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.033 60.045 283550000 49888000 35563000 36402000 0 0 0 25012000 30737000 23377000 0 0 0 13723000 14799000 13200000 0 0 0 12438000 15144000 13265000 0 0 0 18679 426 18095 347082;347083;347084;347085;347086;347087;347088;347089;347090;347091;347092;347093 211485;211486;211487;211488;211489;211490;211491;211492;211493 211490 1 SLISMHGAWLSFSDAPLLDNAELHIEDNER Unmodified 3379.6143 0.61430464 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 53.825 52.34 3 0.015325 25864 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 55.406 49.805 36132000 7510400 0 0 0 0 0 0 5537400 6801600 0 0 0 0 0 0 0 0 0 5163500 5833100 5286100 0 0 0 18680 1564 18096 347094;347095;347096;347097;347098;347099 211494;211495 211494 0 SLITDVSETHK Unmodified 1228.6299 0.62993134 206 P09155 rnd Ribonuclease D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 18.954 19.623 2 0.00023497 7572 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 100.02 85.899 43286000 4046500 5863500 3339800 0 0 0 0 0 0 0 0 0 4107000 3493500 4231700 0 0 0 5749900 5752000 6702300 0 0 0 18681 206 18097 347100;347101;347102;347103;347104;347105;347106;347107;347108 211496;211497 211496 2 SLITGER Unmodified 774.42357 0.42356738 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.037 15.414 2 0.0051746 4126 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 100.74 26.327 500010000 0 0 0 0 0 4298300 39877000 43426000 41866000 17734000 16382000 16388000 0 0 0 0 2588700 4093300 53157000 0 43691000 73812000 74333000 68360000 18682 1067 18098 347109;347110;347111;347112;347113;347114;347115;347116;347117;347118;347119;347120;347121;347122 211498;211499;211500;211501;211502 211500 5 SLKPGAILINACR Unmodified 1411.797 0.79695386 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 1 1 1 1 1 1 1 1 26.197 24.968 2;3 1.0956E-05 11661 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.97 104.77 546370000 37290000 100600000 32838000 621660 0 770970 100920000 85721000 29457000 0 543900 0 28676000 26105000 22627000 0 0 0 25977000 26125000 28088000 0 0 0 18683 111 18099 347123;347124;347125;347126;347127;347128;347129;347130;347131;347132;347133;347134;347135;347136;347137;347138;347139;347140;347141 211503;211504;211505;211506;211507;211508;211509;211510;211511 211503 9 SLLAQLDQK Unmodified 1014.571 0.5709599 314 P0A761 nanE Putative N-acetylmannosamine-6-phosphate 2-epimerase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 29.666 28.339 2 0.00020006 13119 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.57 101.64 329870000 41893000 36726000 36883000 0 0 0 35746000 33829000 37467000 0 0 0 0 0 28485000 0 0 0 26036000 26690000 26116000 0 0 0 18684 314 18100 347142;347143;347144;347145;347146;347147;347148;347149;347150;347151 211512;211513;211514;211515 211515 1 SLLEDGGVIR Unmodified 1057.5768 0.57677356 1445 P36767 rdgC Recombination-associated protein RdgC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.797 29.41 2 0.00013167 9857 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 127.56 90.006 544790000 45457000 42728000 31592000 742530 0 716990 29627000 27801000 27378000 3196500 3544700 3189800 41073000 45364000 38814000 13848000 9820200 12312000 41042000 47470000 44957000 11152000 11673000 11296000 18685 1445 18101 347152;347153;347154;347155;347156;347157;347158;347159;347160;347161;347162;347163;347164;347165;347166;347167;347168;347169;347170;347171;347172;347173;347174 211516;211517;211518;211519;211520;211521;211522;211523;211524;211525;211526;211527;211528;211529;211530;211531;211532;211533;211534 211518 19 SLLEGEGSSGGGGR Unmodified 1261.5899 0.58985744 13 CON__P13645 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.216 16.504 2 4.5354E-08 4511 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 145.46 132.44 160000000 0 0 0 10893000 8696100 9481200 0 0 0 20789000 21599000 14619000 0 0 0 2433700 3294500 2644200 0 0 0 22360000 21621000 21569000 + 18686 13 18102 347175;347176;347177;347178;347179;347180;347181;347182;347183;347184;347185;347186 211535;211536;211537;211538;211539;211540;211541;211542;211543;211544;211545 211541 11 SLLKPEHQGLATEVMCR Unmodified 1967.9921 0.99210121 1119 P16456 selD Selenide, water dikinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 2 2 2 3 3 3 1 1 2 3 3 3 2 2 2 24.111 23.181 2;3;4 1.5242E-14 9982 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 220.4 215.23 2234300000 186210000 147900000 146270000 8186500 7750900 7246400 220680000 206210000 187090000 23111000 24284000 22326000 134390000 154300000 172660000 5469900 2423900 4867400 188770000 173290000 175480000 10632000 12044000 12711000 18687 1119 18103 347187;347188;347189;347190;347191;347192;347193;347194;347195;347196;347197;347198;347199;347200;347201;347202;347203;347204;347205;347206;347207;347208;347209;347210;347211;347212;347213;347214;347215;347216;347217;347218;347219;347220;347221;347222;347223;347224;347225;347226;347227;347228;347229;347230;347231;347232;347233;347234;347235;347236;347237;347238;347239;347240;347241;347242;347243;347244 211546;211547;211548;211549;211550;211551;211552;211553;211554;211555;211556;211557;211558;211559;211560;211561;211562;211563;211564;211565;211566;211567;211568;211569;211570;211571;211572;211573;211574;211575;211576;211577;211578;211579;211580;211581;211582;211583;211584;211585;211586;211587;211588;211589;211590 211582 44 SLLLLQK Unmodified 813.53239 0.53238955 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 30.785 30.276 2 0.022407 10446 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 74.717 14.035 74693000 0 0 0 0 0 0 0 0 0 0 0 31688000 0 0 0 17038000 13652000 12314000 0 0 0 0 0 0 18688 1321 18104 347245;347246;347247;347248 211591;211592;211593 211591 3 SLLLVDSALR Unmodified 1085.6445 0.64445919 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 41.868 40.238 2 3.5583E-12 19737 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 206.09 180.35 179830000 62556000 49939000 56196000 3807200 3611000 3724600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18689 46 18105 347249;347250;347251;347252;347253;347254 211594;211595;211596 211594 3 SLLNVPAGK Unmodified 897.52837 0.5283668 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.339 23.433 2 0.0012413 10285 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.55 85.565 6867500000 281920000 264800000 257720000 2488300 1960500 2599600 819490000 802380000 744230000 2803900 2575200 2500600 605520000 660640000 570090000 1582100 1265100 1020900 639460000 653880000 543020000 1663700 2329400 1575600 18690 325 18106 347255;347256;347257;347258;347259;347260;347261;347262;347263;347264;347265;347266;347267;347268;347269;347270;347271;347272;347273;347274;347275;347276;347277;347278 211597;211598;211599;211600;211601;211602;211603;211604;211605;211606;211607;211608;211609;211610;211611;211612;211613;211614;211615;211616;211617;211618 211604 20 SLLREEIEGSGILSK Unmodified 1629.8938 0.8937506 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 2 2 2 2 7 8 8 2 2 2 15 15 15 2 2 2 6 9 10 37.383 36.181 2;3 3.0203E-35 12261 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 254.89 210.46 23824000000 25276000 27735000 29437000 7694600 11323000 9125300 62074000 60590000 61866000 822740000 778490000 829920000 69348000 61135000 58820000 5154900000 4178900000 6726600000 102140000 96044000 88888000 1394500000 1508900000 1657300000 18691 463 18107 347279;347280;347281;347282;347283;347284;347285;347286;347287;347288;347289;347290;347291;347292;347293;347294;347295;347296;347297;347298;347299;347300;347301;347302;347303;347304;347305;347306;347307;347308;347309;347310;347311;347312;347313;347314;347315;347316;347317;347318;347319;347320;347321;347322;347323;347324;347325;347326;347327;347328;347329;347330;347331;347332;347333;347334;347335;347336;347337;347338;347339;347340;347341;347342;347343;347344;347345;347346;347347;347348;347349;347350;347351;347352;347353;347354;347355;347356;347357;347358;347359;347360;347361;347362;347363;347364;347365;347366;347367;347368;347369;347370;347371;347372;347373;347374;347375;347376;347377;347378;347379;347380;347381;347382;347383;347384;347385;347386;347387;347388;347389;347390;347391;347392;347393;347394;347395;347396;347397;347398;347399 211619;211620;211621;211622;211623;211624;211625;211626;211627;211628;211629;211630;211631;211632;211633;211634;211635;211636;211637;211638;211639;211640;211641;211642;211643;211644;211645;211646;211647;211648;211649;211650;211651;211652;211653;211654;211655;211656;211657;211658;211659;211660;211661;211662;211663;211664;211665;211666;211667;211668;211669;211670;211671;211672;211673;211674;211675;211676;211677;211678;211679;211680;211681;211682;211683;211684;211685;211686;211687;211688;211689;211690;211691;211692;211693;211694;211695;211696;211697;211698;211699;211700;211701;211702;211703;211704;211705;211706;211707;211708;211709;211710;211711;211712;211713;211714;211715;211716;211717;211718;211719;211720;211721;211722;211723;211724;211725;211726;211727;211728;211729;211730;211731;211732;211733;211734;211735;211736;211737;211738;211739;211740;211741;211742;211743;211744;211745;211746;211747;211748 211723 128 SLLREEIEGSGILSKDDIIDVMK Oxidation (M) 2575.3415 0.34148382 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 7 6 6 6 4 5 6 43.84 42.457 3;4 5.1059E-15 15992 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 139.51 137.04 862660000 0 0 0 0 0 0 0 0 0 63485000 59079000 56189000 0 0 0 131510000 159550000 248790000 0 0 0 49692000 45053000 49309000 18692 463 18108 347400;347401;347402;347403;347404;347405;347406;347407;347408;347409;347410;347411;347412;347413;347414;347415;347416;347417;347418;347419;347420;347421;347422;347423;347424;347425;347426;347427;347428;347429;347430;347431;347432;347433;347434;347435;347436;347437;347438;347439;347440;347441;347442;347443;347444;347445;347446;347447;347448;347449;347450;347451 211749;211750;211751;211752;211753;211754;211755;211756;211757;211758;211759;211760;211761;211762;211763;211764;211765;211766;211767;211768;211769;211770;211771;211772;211773;211774;211775;211776;211777;211778;211779;211780;211781;211782;211783;211784;211785;211786;211787;211788;211789;211790;211791;211792 211773 254 40 SLLREEIEGSGILSKDDIIDVMK Unmodified 2559.3466 0.3465692 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 5 8 14 13 15 9 7 7 49.087 48.275 2;3;4 8.6553E-53 16487 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 261.98 238.85 28836000000 0 0 0 9936400 11031000 11984000 0 0 0 1586600000 1291800000 1396900000 0 0 0 6518500000 5902200000 7117900000 0 0 0 1664800000 1699100000 1625500000 18693 463 18108 347452;347453;347454;347455;347456;347457;347458;347459;347460;347461;347462;347463;347464;347465;347466;347467;347468;347469;347470;347471;347472;347473;347474;347475;347476;347477;347478;347479;347480;347481;347482;347483;347484;347485;347486;347487;347488;347489;347490;347491;347492;347493;347494;347495;347496;347497;347498;347499;347500;347501;347502;347503;347504;347505;347506;347507;347508;347509;347510;347511;347512;347513;347514;347515;347516;347517;347518;347519;347520;347521;347522;347523;347524;347525;347526;347527;347528;347529;347530;347531;347532;347533;347534;347535;347536;347537;347538;347539 211793;211794;211795;211796;211797;211798;211799;211800;211801;211802;211803;211804;211805;211806;211807;211808;211809;211810;211811;211812;211813;211814;211815;211816;211817;211818;211819;211820;211821;211822;211823;211824;211825;211826;211827;211828;211829;211830;211831;211832;211833;211834;211835;211836;211837;211838;211839;211840;211841;211842;211843;211844;211845;211846;211847;211848;211849;211850;211851;211852;211853;211854;211855;211856;211857;211858;211859;211860;211861;211862;211863;211864;211865;211866;211867;211868;211869;211870;211871;211872;211873;211874;211875;211876;211877;211878;211879;211880;211881;211882;211883;211884;211885;211886;211887;211888;211889;211890 211831 88 SLLSYDGLDASR Unmodified 1295.6357 0.635745 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 36.76 35.233 2 1.1614E-13 16400 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 151.22 139.07 39518000 0 0 0 0 0 0 0 0 0 0 0 0 0 17196000 0 0 0 0 0 22322000 0 0 0 0 18694 35 18109 347540;347541;347542 211891;211892 211892 2 SLLVSSQSFNNASGK Unmodified 1537.7736 0.77363546 1898 P77335 hlyE Hemolysin E, chromosomal yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 28.022 26.441 2 1.3518E-08 12312 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 172.92 168.62 47164000 0 5758800 3871300 0 0 0 10735000 9471100 8592000 4959900 3775900 0 0 0 0 0 0 0 0 0 0 0 0 0 18695 1898 18110 347543;347544;347545;347546;347547;347548;347549 211893 211893 1 SLMDLYTFAQR Unmodified 1343.6544 0.65437195 759 P0ACZ4 evgA Positive transcription regulator EvgA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 49.87 48.459 2 2.9896E-07 23971 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 158.87 126.94 239940000 16931000 17670000 0 0 0 0 27652000 27947000 36808000 0 0 0 15252000 13183000 12348000 0 0 0 21319000 26115000 24719000 0 0 0 18696 759 18111 347550;347551;347552;347553;347554;347555;347556;347557;347558;347559;347560 211894;211895;211896;211897 211895 3 SLMQLVPIYVLSANGER Unmodified 1889.0081 0.0080688509 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.968 53.523 2 0.00027083 26653 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.705 68.005 154340000 29215000 33789000 33838000 798780 0 1467200 10474000 12145000 15348000 0 0 0 3108200 3142300 2505500 0 0 0 3583200 0 4923200 0 0 0 18697 757 18112 347561;347562;347563;347564;347565;347566;347567;347568;347569;347570;347571;347572;347573 211898;211899;211900;211901 211900 0 SLMVLEEGVIEGR Unmodified 1430.7439 0.74391524 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 2 1 44.161 42.644 2 1.9543E-09 19788 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 176.48 167.3 125000000 0 0 0 0 0 0 0 0 0 0 0 0 39973000 33627000 28900000 0 0 0 0 10586000 5319600 3153800 3434700 0 18698 647 18113 347574;347575;347576;347577;347578;347579;347580;347581;347582 211902;211903;211904;211905;211906;211907;211908 211907 6 SLNFATSDNRPLYVIASDGGLLPEPVK Unmodified 2872.4971 0.49707326 1439 P36649 cueO Blue copper oxidase CueO yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 51.634 50.388 3 3.7801E-11 24965 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.73 121.44 327100000 43294000 49509000 42765000 0 0 0 33183000 0 28623000 0 0 0 0 31913000 31585000 0 0 0 32245000 33985000 0 0 0 0 18699 1439 18114 347583;347584;347585;347586;347587;347588;347589;347590;347591 211909;211910;211911;211912 211909 4 SLNFLDFEQPIAELEAK Unmodified 1962.9939 0.99385857 651 P0ABD5 accA Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.008 53.547 2 3.5577E-31 26581 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 237.07 217.62 1238000000 73651000 68365000 55601000 0 3209700 4174300 101820000 77330000 98432000 12441000 12174000 12936000 109090000 96942000 102520000 0 0 0 112700000 128890000 113770000 20484000 16047000 17404000 18700 651 18115 347592;347593;347594;347595;347596;347597;347598;347599;347600;347601;347602;347603;347604;347605;347606;347607;347608;347609;347610;347611 211913;211914;211915;211916;211917;211918;211919;211920;211921;211922;211923;211924 211914 12 SLNNQFASFIDK Unmodified 1382.683 0.68302954 11;3 CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.25 38.551 2 1.4162E-10 14117 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 150.94 140.42 1812500000 0 0 0 31047000 35853000 32510000 0 0 0 473050000 361830000 353600000 0 0 0 0 17631000 21078000 0 0 0 149260000 162460000 174160000 + 18701 11;3 18116 347612;347613;347614;347615;347616;347617;347618;347619;347620;347621;347622;347623 211925;211926;211927;211928;211929;211930;211931;211932 211925 6 SLNNQFASFIDKVR Unmodified 1637.8526 0.85255449 11;3 CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 1 2 2 1 41.141 39.344 2;3 1.4319E-07 15813 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 116.19 115.04 227770000 0 0 0 14233000 15840000 9041900 0 0 0 44996000 39552000 40417000 0 0 0 6526500 6249900 6810800 0 0 0 14696000 18357000 11047000 + 18702 11;3 18117 347624;347625;347626;347627;347628;347629;347630;347631;347632;347633;347634;347635;347636;347637;347638;347639;347640;347641;347642 211933;211934;211935;211936;211937;211938;211939;211940;211941;211942;211943;211944;211945 211937 13 SLNQANDIAADFGSK Unmodified 1549.7372 0.73724996 682 P0ABU7 exbB Biopolymer transport protein ExbB yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.05 30.684 2 5.5689E-20 14493 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 204.49 198.25 207170000 13119000 9993200 11607000 2789600 4246600 3504300 12746000 10378000 11428000 8826200 7732000 5100700 0 9153500 10934000 1929100 1449200 1067300 24744000 24827000 20403000 0 3984500 7210200 18703 682 18118 347643;347644;347645;347646;347647;347648;347649;347650;347651;347652;347653;347654;347655;347656;347657;347658;347659;347660;347661;347662;347663;347664;347665;347666 211946;211947;211948;211949;211950;211951;211952;211953;211954;211955;211956;211957;211958;211959 211950 14 SLNVALR Unmodified 771.46029 0.46028724 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 2 1 2 2 2 1 2 3 2 1 3 3 2 1 1 20.6 20.961 1;2 1.1672E-07 8157 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164 58.779 16268000000 2007900000 2377600000 1652000000 5021400 6806900 5395500 874480000 850160000 987590000 0 0 2764100 1017400000 914120000 840290000 0 0 1749100 1466300000 1574400000 1679000000 0 2695300 2364700 18704 179 18119 347667;347668;347669;347670;347671;347672;347673;347674;347675;347676;347677;347678;347679;347680;347681;347682;347683;347684;347685;347686;347687;347688;347689;347690;347691;347692;347693;347694;347695;347696;347697;347698;347699;347700;347701;347702;347703;347704 211960;211961;211962;211963;211964;211965;211966;211967;211968;211969;211970;211971;211972;211973;211974;211975;211976;211977 211970 16 SLPGELR Unmodified 770.42865 0.42865276 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.069 18.667 2 0.020298 7242 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 76.847 40.26 160180000 7647400 7120800 5130000 0 0 0 23740000 23732000 19197000 0 0 0 11673000 11610000 12252000 0 0 0 11678000 14527000 11869000 0 0 0 18705 1961 18120 347705;347706;347707;347708;347709;347710;347711;347712;347713;347714;347715;347716 211978;211979;211980 211978 3 SLPHCPK Unmodified 837.41671 0.41670786 945 P0AFJ1 phnA Protein PhnA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.642 11.458 2 0.030054 2708 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 66.994 50.067 887400000 59894000 54557000 48452000 0 0 0 100120000 84667000 101160000 0 0 0 80421000 87708000 88764000 0 0 0 57534000 66715000 57412000 0 0 0 18706 945 18121 347717;347718;347719;347720;347721;347722;347723;347724;347725;347726;347727;347728 211981;211982;211983;211984;211985;211986;211987;211988;211989;211990;211991;211992 211981 12 SLPIPNHYGVDDFPVIIQDK Unmodified 2266.1634 0.16338352 1286 P26648 ftsP Cell division protein FtsP yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 47.513 46.17 3 7.2315E-05 22354 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 74.698 70.67 187280000 19882000 22904000 23188000 0 0 0 23093000 0 0 0 0 0 15531000 20762000 14127000 0 0 0 23287000 0 24503000 0 0 0 18707 1286 18122 347729;347730;347731;347732;347733;347734;347735;347736;347737 211993;211994;211995;211996;211997 211993 5 SLQEAVMEEIIKPILPAEWLTSATK Unmodified 2796.4983 0.49831881 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 2 1 3 3 3 3 3 3 3 3 3 3 3 3 1 1 1 55.56 54.092 2;3;4 6.2382E-60 26913 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 324.63 317.19 5561500000 472240000 432950000 405010000 23639000 28711000 18541000 597880000 517700000 512240000 72269000 76275000 63025000 341260000 380550000 332850000 0 0 0 461710000 416710000 385300000 7296700 6978500 8351700 18708 388 18123 347738;347739;347740;347741;347742;347743;347744;347745;347746;347747;347748;347749;347750;347751;347752;347753;347754;347755;347756;347757;347758;347759;347760;347761;347762;347763;347764;347765;347766;347767;347768;347769;347770;347771;347772;347773;347774;347775;347776;347777;347778;347779;347780;347781;347782;347783;347784;347785;347786;347787;347788;347789 211998;211999;212000;212001;212002;212003;212004;212005;212006;212007;212008;212009;212010;212011;212012;212013;212014;212015;212016;212017;212018;212019;212020;212021;212022;212023;212024;212025;212026;212027;212028 212006 31 SLQFLDGTQLDFVK Unmodified 1609.8352 0.83517309 588 P0AAC8 iscA Iron-binding protein IscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.054 50.766 2 2.4172E-11 24695 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 215.08 201.41 1349900000 123930000 122250000 109570000 0 0 0 96065000 92155000 100650000 0 4249200 4872400 98061000 81760000 78324000 0 0 0 142410000 142570000 147550000 0 0 5493800 18709 588 18124 347790;347791;347792;347793;347794;347795;347796;347797;347798;347799;347800;347801;347802;347803;347804 212029;212030;212031;212032;212033;212034;212035;212036;212037;212038 212033 10 SLQKEWANDLDQLINLEK Unmodified 2156.1113 0.11134795 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 51.678 50.737 3 6.7112E-07 18656 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 102.5 96.836 76833000 0 0 0 0 0 0 0 0 0 13331000 10156000 9213500 0 1449200 0 10663000 10483000 12186000 0 0 0 5341200 4009600 0 18710 30 18125 347805;347806;347807;347808;347809;347810;347811;347812;347813 212039;212040;212041;212042 212039 4 SLQKPTILNVETVAR Unmodified 1667.957 0.95701956 1581 P45799 nudE ADP compounds hydrolase NudE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 29.875 28.585 2;3 1.1282E-11 13257 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 162.37 155.05 434840000 54505000 63531000 56975000 0 0 0 6700000 5085200 5854600 0 0 0 23795000 24792000 24907000 0 0 0 66842000 58690000 43162000 0 0 0 18711 1581 18126 347814;347815;347816;347817;347818;347819;347820;347821;347822;347823;347824;347825;347826;347827;347828;347829;347830;347831;347832;347833;347834 212043;212044;212045;212046;212047;212048;212049;212050;212051;212052 212046 9 SLQNQVVDIAPEQYQK Unmodified 1858.9425 0.94249171 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 33.124 31.672 2 4.8054E-39 15406 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 250.69 236.01 204150000 17651000 15530000 16198000 0 0 515380 15980000 17733000 18797000 0 0 0 15478000 14515000 11644000 0 0 0 16950000 20737000 22420000 0 0 0 18712 1482 18127 347835;347836;347837;347838;347839;347840;347841;347842;347843;347844;347845;347846;347847 212053;212054;212055;212056;212057;212058;212059;212060;212061;212062;212063;212064 212053 12 SLQSLPWR Unmodified 985.53451 0.53451481 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 32.438 31.081 2 0.014267 14788 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 85.265 69.633 209160000 0 12055000 16219000 0 0 0 24893000 19269000 23270000 0 0 0 15685000 16968000 16327000 0 0 0 19722000 22682000 22066000 0 0 0 18713 505 18128 347848;347849;347850;347851;347852;347853;347854;347855;347856;347857;347858 212065;212066;212067;212068;212069;212070;212071 212066 0 SLQTAEGILK Unmodified 1058.5972 0.59717465 1821 P76142 lsrB Autoinducer 2-binding protein LsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 25.788 24.872 2 0.00034545 11184 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.11 88.485 556220000 184100000 193510000 172830000 0 0 0 0 0 0 0 0 0 0 5785100 0 0 0 0 0 0 0 0 0 0 18714 1821 18129 347859;347860;347861;347862 212072;212073;212074 212072 3 SLQVGPGMSPVAQINPLVSR Unmodified 2049.1041 0.1040945 1948 P80668 feaB Phenylacetaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 47.849 46.51 2 1.6324E-11 22912 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 123.29 109.55 13111000 4273800 5174400 3662300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18715 1948 18130 347863;347864;347865 212075 212075 0 SLRDDTWVTLR Unmodified 1360.7099 0.709913 809 P0ADU5 ygiW Protein YgiW yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 30.862 29.483 2;3 2.0509E-19 13964 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 237.84 237.84 5576900000 566440000 516360000 511060000 5259400 5076300 5682500 990470000 912250000 962280000 11920000 11103000 11640000 171800000 141040000 131120000 3200800 1519100 2555200 204430000 203370000 199360000 3552200 2941600 2464800 18716 809 18131 347866;347867;347868;347869;347870;347871;347872;347873;347874;347875;347876;347877;347878;347879;347880;347881;347882;347883;347884;347885;347886;347887;347888;347889;347890;347891;347892;347893;347894;347895;347896;347897;347898;347899;347900;347901;347902;347903;347904;347905;347906;347907;347908;347909;347910;347911 212076;212077;212078;212079;212080;212081;212082;212083;212084;212085;212086;212087;212088;212089;212090;212091;212092;212093;212094;212095;212096;212097;212098 212082 22 SLSDITK Unmodified 762.41233 0.41233399 1174 P21179 katE Catalase HPII yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.141 15.969 2 0.017702 5400 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.469 8.1093 409110000 61291000 54428000 50356000 429770 0 518040 56811000 52977000 48603000 0 0 0 10633000 6849600 11109000 0 0 0 14261000 21212000 19636000 0 0 0 18717 1174 18132 347912;347913;347914;347915;347916;347917;347918;347919;347920;347921;347922;347923;347924;347925 212099 212099 1 SLSDTLEEVLSSSGEK Unmodified 1679.8101 0.81014013 1689 P64581 yqjD Uncharacterized protein YqjD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 52.369 51.238 2;3 1.6842E-30 18472 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 277.06 251.59 14858000000 866080000 827240000 712280000 299620000 399840000 385200000 2351000000 2318500000 2340200000 581890000 545490000 593330000 321380000 294570000 275260000 29654000 31947000 54066000 368740000 397180000 404900000 182240000 138620000 138580000 18718 1689 18133 347926;347927;347928;347929;347930;347931;347932;347933;347934;347935;347936;347937;347938;347939;347940;347941;347942;347943;347944;347945;347946;347947;347948;347949;347950;347951;347952;347953;347954;347955;347956;347957;347958;347959;347960;347961;347962;347963;347964;347965;347966;347967;347968;347969;347970;347971;347972;347973 212100;212101;212102;212103;212104;212105;212106;212107;212108;212109;212110;212111;212112;212113;212114;212115;212116;212117;212118;212119;212120;212121;212122;212123;212124;212125;212126;212127;212128;212129;212130;212131;212132;212133;212134;212135;212136;212137;212138;212139;212140;212141;212142;212143;212144;212145 212129 46 SLSELFMTHPPLDKR Unmodified 1769.9134 0.91344018 1228 P23894 htpX Protease HtpX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 34.885 33.113 3;4 0.00010319 12596 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 66.797 49.096 112940000 0 0 0 5913900 6786200 6940000 15381000 16276000 21641000 0 0 6798800 15180000 1738000 0 0 0 0 0 0 0 5318200 5696800 5272800 18719 1228 18134 347974;347975;347976;347977;347978;347979;347980;347981;347982;347983;347984;347985;347986;347987;347988;347989;347990;347991;347992;347993;347994 212146;212147;212148;212149;212150;212151;212152 212148 7 SLSEPGALEAAAETGLPVCLMHMQGNPK Unmodified 2907.3929 0.39288424 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 50.499 49.117 3 2.2274E-17 23702 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 156.92 156.2 412530000 17013000 19726000 32603000 0 0 0 32114000 41600000 22204000 0 0 0 39668000 18289000 32448000 0 0 0 56229000 51695000 48942000 0 0 0 18720 691 18135 347995;347996;347997;347998;347999;348000;348001;348002;348003;348004;348005;348006;348007;348008;348009;348010;348011;348012;348013;348014;348015;348016 212153;212154;212155;212156;212157;212158;212159 212155 7 SLSFCIYDICYAK Unmodified 1638.7422 0.74220068 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 0 By MS/MS By MS/MS 1 1 48.938 47.647 2 1.669E-06 22354 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 133.75 127.78 60323000 43800000 0 0 0 0 0 0 0 0 0 0 0 0 16523000 0 0 0 0 0 0 0 0 0 0 18721 340 18136 348017;348018 212160;212161 212161 2 SLSLHLLNEAQNELELSEGSDDNEGIKER Unmodified 3238.559 0.55895783 682 P0ABU7 exbB Biopolymer transport protein ExbB yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.528 41.768 4 1.0035E-16 17045 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 153.06 138.24 121530000 0 0 4329200 4131900 3873000 3819300 0 0 4304900 9669600 9749100 8105300 4207100 3750700 5265100 0 0 0 11368000 11949000 12881000 7175100 8368000 8587800 18722 682 18137 348019;348020;348021;348022;348023;348024;348025;348026;348027;348028;348029;348030;348031;348032;348033;348034;348035 212162;212163;212164;212165;212166;212167;212168 212162 6 SLSTEATAK Unmodified 906.46583 0.46582612 823 P0ADZ4 rpsO 30S ribosomal protein S15 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.404 12.01 2 0.0015314 3051 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 88.358 83.677 8324700000 800320000 771110000 745650000 28203000 32510000 26503000 328020000 305440000 288700000 70130000 68269000 66097000 323260000 304680000 311860000 725710000 905990000 902100000 446790000 370550000 395850000 38795000 32590000 35624000 18723 823 18138 348036;348037;348038;348039;348040;348041;348042;348043;348044;348045;348046;348047;348048;348049;348050;348051;348052;348053;348054;348055;348056;348057;348058;348059 212169;212170;212171;212172;212173;212174;212175;212176;212177;212178 212172 10 SLSVNTAAAGGNASLMTIG Unmodified 1733.8618 0.86179854 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.995 45.463 2 0.054136 22044 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 40.725 27.605 121100000 5551800 4545100 5083600 5571200 4536200 5833300 0 0 0 7892400 7626500 5507300 3823600 4797800 2461500 0 0 0 10646000 9762100 7474900 9130400 11376000 9478800 18724 215 18139 348060;348061;348062;348063;348064;348065;348066;348067;348068;348069;348070;348071;348072;348073;348074;348075;348076;348077 212179 212179 1 SLTCAATLGILPAGVR Unmodified 1598.8814 0.88141177 1425 P33593 nikD Nickel import ATP-binding protein NikD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.92 43.136 2 0.053659 21029 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 59.198 49.876 47447000 0 0 0 0 0 0 3177600 3810300 2754200 3818000 3974700 3569800 3191800 2441000 2980200 0 0 0 3420100 4411400 3879700 1623200 2026400 2368100 18725 1425 18140 348078;348079;348080;348081;348082;348083;348084;348085;348086;348087;348088;348089;348090;348091;348092 212180 212180 0 SLTDFFAPLR Unmodified 1165.6132 0.61315906 1366 P31433 yicH Uncharacterized protein YicH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.042 51.602 2 9.3701E-05 20801 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 131.06 126.33 82676000 3948400 6201700 0 0 0 0 7025200 6921200 8402500 5273500 6333600 4457500 5656300 4846500 4233700 0 0 0 7803300 6328800 5244100 0 0 0 18726 1366 18141 348093;348094;348095;348096;348097;348098;348099;348100;348101;348102;348103;348104;348105;348106 212181;212182;212183;212184 212182 4 SLTDTVTHVR Unmodified 1127.5935 0.59348625 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 2 2 1 17.127 17.802 2;3 3.7376E-12 4708 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 202.28 191.57 566450000 63561000 87003000 104530000 118820000 92054000 98906000 0 0 0 0 1567400 0 0 0 0 0 0 0 0 0 0 0 0 0 18727 151 18142 348107;348108;348109;348110;348111;348112;348113;348114;348115;348116;348117;348118;348119;348120 212185;212186;212187;212188;212189;212190;212191;212192 212190 8 SLTEIKDVLASR Unmodified 1330.7456 0.7456298 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 2 14 15 14 2 2 2 23 22 18 2 2 2 15 19 12 36.174 34.827 1;2;3 5.7425E-23 9758 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 271.65 224.46 96705000000 100720000 53048000 51296000 63612000 60568000 64509000 75032000 34833000 69036000 6183700000 5953400000 5683100000 48570000 55304000 53819000 19378000000 17978000000 20269000000 101290000 78335000 98043000 6419000000 6748500000 7083700000 18728 383 18143 348121;348122;348123;348124;348125;348126;348127;348128;348129;348130;348131;348132;348133;348134;348135;348136;348137;348138;348139;348140;348141;348142;348143;348144;348145;348146;348147;348148;348149;348150;348151;348152;348153;348154;348155;348156;348157;348158;348159;348160;348161;348162;348163;348164;348165;348166;348167;348168;348169;348170;348171;348172;348173;348174;348175;348176;348177;348178;348179;348180;348181;348182;348183;348184;348185;348186;348187;348188;348189;348190;348191;348192;348193;348194;348195;348196;348197;348198;348199;348200;348201;348202;348203;348204;348205;348206;348207;348208;348209;348210;348211;348212;348213;348214;348215;348216;348217;348218;348219;348220;348221;348222;348223;348224;348225;348226;348227;348228;348229;348230;348231;348232;348233;348234;348235;348236;348237;348238;348239;348240;348241;348242;348243;348244;348245;348246;348247;348248;348249;348250;348251;348252;348253;348254;348255;348256;348257;348258;348259;348260;348261;348262;348263;348264;348265;348266;348267;348268;348269;348270;348271;348272;348273;348274;348275;348276;348277;348278;348279;348280;348281;348282;348283;348284;348285;348286;348287;348288;348289;348290;348291;348292;348293;348294;348295;348296;348297;348298;348299;348300;348301;348302;348303 212193;212194;212195;212196;212197;212198;212199;212200;212201;212202;212203;212204;212205;212206;212207;212208;212209;212210;212211;212212;212213;212214;212215;212216;212217;212218;212219;212220;212221;212222;212223;212224;212225;212226;212227;212228;212229;212230;212231;212232;212233;212234;212235;212236;212237;212238;212239;212240;212241;212242;212243;212244;212245;212246;212247;212248;212249;212250;212251;212252;212253;212254;212255;212256;212257;212258;212259;212260;212261;212262;212263;212264;212265;212266;212267;212268;212269;212270;212271;212272;212273;212274;212275;212276;212277;212278;212279;212280;212281;212282;212283;212284;212285;212286;212287;212288;212289;212290;212291;212292;212293;212294;212295;212296;212297;212298;212299;212300;212301;212302;212303;212304;212305;212306;212307;212308;212309;212310;212311;212312;212313;212314;212315;212316;212317;212318;212319;212320;212321;212322;212323;212324;212325;212326;212327;212328;212329;212330;212331;212332;212333;212334;212335;212336;212337;212338;212339;212340;212341;212342;212343;212344;212345;212346;212347;212348;212349;212350;212351;212352;212353;212354;212355;212356;212357;212358;212359;212360;212361;212362;212363;212364;212365;212366;212367;212368;212369;212370;212371;212372;212373;212374;212375;212376;212377;212378;212379;212380;212381;212382;212383;212384;212385;212386;212387;212388;212389;212390;212391;212392;212393;212394;212395;212396;212397;212398;212399;212400;212401;212402;212403;212404;212405;212406;212407;212408 212242 211 SLTEKLK Unmodified 817.49092 0.49091866 1998 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 1 1 1 2 2 1 1 2 2 2 11.634 12.077 2 0.0012721 2576 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 146.21 32.709 1249700000 12285000 13956000 10934000 0 0 0 0 8483000 9625000 99974000 85877000 0 11305000 10912000 11155000 0 272510000 319690000 14200000 12096000 0 116540000 124910000 115280000 + 18729 1998 18144 348304;348305;348306;348307;348308;348309;348310;348311;348312;348313;348314;348315;348316;348317;348318;348319;348320;348321;348322;348323;348324;348325;348326;348327 212409;212410;212411;212412;212413;212414;212415 212415 7 SLTIAIR Unmodified 772.48069 0.48068833 1700 P64624 yheO Uncharacterized protein YheO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.242 25.065 2 0.0006586 11726 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.28 26.127 165650000 16895000 16031000 16260000 1190300 1368700 1283700 14939000 17038000 17593000 0 0 0 9870400 8569500 6785600 0 0 0 10500000 13907000 9844200 939840 1046800 1589600 18730 1700 18145 348328;348329;348330;348331;348332;348333;348334;348335;348336;348337;348338;348339;348340;348341;348342;348343;348344;348345 212416;212417;212418;212419;212420;212421;212422;212423;212424;212425;212426 212416 11 SLTLGMTEAAK Unmodified 1120.5798 0.57981002 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 25.975 24.923 2 0.00023755 11087 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 99.688 93.049 153030000 53892000 48573000 41560000 928380 844250 879150 0 0 0 0 0 0 2701600 0 3647800 0 0 0 0 0 0 0 0 0 18731 1173 18146 348346;348347;348348;348349;348350;348351;348352;348353 212427;212428;212429 212429 3 SLTLLAR Unmodified 772.48069 0.48068833 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 2 26.87 25.626 2 0.00021486 11339 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 164.78 27.336 963510000 41057000 33334000 34593000 15345000 19375000 23710000 34331000 32425000 32359000 36418000 35561000 23585000 33377000 29138000 30335000 10614000 9394200 10498000 118140000 100780000 110440000 50030000 47850000 50807000 18732 215 18147 348354;348355;348356;348357;348358;348359;348360;348361;348362;348363;348364;348365;348366;348367;348368;348369;348370;348371;348372;348373;348374;348375;348376;348377;348378;348379;348380;348381 212430;212431;212432;212433;212434;212435;212436;212437;212438;212439;212440;212441;212442;212443;212444;212445;212446;212447;212448;212449 212446 19 SLTNVNAQFQR Unmodified 1276.6524 0.65239812 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.421 21.803 2 3.2737E-11 8843 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 201.39 184.85 117460000 0 0 0 1003700 1018800 0 11208000 10688000 10008000 3131300 1509800 0 9414500 10261000 10547000 0 782090 664570 15717000 16097000 15411000 0 0 0 18733 1631 18148 348382;348383;348384;348385;348386;348387;348388;348389;348390;348391;348392;348393;348394;348395;348396;348397 212450;212451;212452;212453;212454;212455;212456;212457;212458 212457 9 SLTPGQEFVK Unmodified 1104.5815 0.58152458 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.485 23.452 2 0.00027456 8065 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 121.05 95.312 696650000 42938000 36130000 39670000 6714400 7903500 5916500 41570000 42420000 37454000 38654000 46030000 41474000 29781000 29897000 28581000 0 0 0 55084000 48678000 44833000 25965000 24759000 22202000 18734 1009 18149 348398;348399;348400;348401;348402;348403;348404;348405;348406;348407;348408;348409;348410;348411;348412;348413;348414;348415;348416;348417;348418 212459;212460;212461;212462;212463;212464;212465;212466;212467;212468;212469;212470;212471 212466 13 SLTPQQQK Unmodified 928.49779 0.49779495 955 P0AFM4 psiF Phosphate starvation-inducible protein PsiF yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.813 11.628 2 0.00089325 2886 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 118.69 66.003 755440000 60145000 59853000 55672000 0 0 0 87325000 87912000 74977000 0 0 0 56929000 48386000 53921000 0 0 0 58275000 56428000 55617000 0 0 0 18735 955 18150 348419;348420;348421;348422;348423;348424;348425;348426;348427;348428;348429;348430 212472;212473;212474;212475 212473 4 SLTSHLASGTPGTVAGFSLALDK Unmodified 2229.1641 0.1641118 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 41.917 40.253 3 5.2012E-15 19744 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 135.98 127.27 114210000 17563000 20767000 0 0 0 0 0 18637000 20801000 0 0 0 8579800 5353800 8882000 0 0 0 0 13627000 0 0 0 0 18736 1155 18151 348431;348432;348433;348434;348435;348436;348437;348438 212476;212477 212477 2 SLVAQQEK Unmodified 901.4869 0.48689592 857 P0AEG4 dsbA Thiol:disulfide interchange protein DsbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 11.5 12.343 1;2 0.00093582 3268 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 116.88 6.5741 3606400000 278920000 213430000 188290000 0 0 0 262320000 280920000 277750000 0 0 0 273600000 279950000 286150000 0 0 0 450080000 406340000 408620000 0 0 0 18737 857 18152 348439;348440;348441;348442;348443;348444;348445;348446;348447;348448;348449;348450;348451;348452;348453;348454;348455;348456;348457;348458;348459 212478;212479;212480;212481;212482;212483;212484;212485;212486;212487;212488;212489;212490 212483 11 SLVGLGGTK Unmodified 830.48617 0.48616764 17 CON__P35908 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 1 2 2 2 20.274 20.269 1;2 0.0010908 6307 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 93.429 34.447 291480000 0 0 0 17238000 15443000 16946000 0 0 0 21095000 17975000 20224000 0 0 0 8611900 10654000 10933000 0 0 0 53247000 49175000 49940000 + 18738 17 18153 348460;348461;348462;348463;348464;348465;348466;348467;348468;348469;348470;348471;348472;348473;348474;348475;348476;348477;348478;348479;348480;348481 212491;212492;212493;212494;212495;212496;212497;212498;212499;212500;212501 212498 7 SLVIVVNK Unmodified 870.55385 0.55385327 268 P0A6P5 der GTPase Der yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 25.307 24.233 2 0.15714 10776 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 47.849 34.889 86709000 18387000 17850000 12602000 0 0 0 6912000 5507600 5652900 0 0 0 0 4356800 3398900 0 0 0 6945900 0 5097000 0 0 0 18739 268 18154 348482;348483;348484;348485;348486;348487;348488;348489;348490;348491 212502 212502 0 SLVLDIK Unmodified 786.48511 0.485105 301 P0A720 tmk Thymidylate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.883 29.527 2 0.022698 13817 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 74.423 60.437 232760000 19120000 13913000 13675000 0 0 0 22918000 18803000 19686000 0 0 0 21096000 18786000 13142000 0 0 0 22231000 25193000 24202000 0 0 0 18740 301 18155 348492;348493;348494;348495;348496;348497;348498;348499;348500;348501;348502;348503 212503;212504;212505;212506;212507;212508;212509;212510;212511;212512 212507 10 SLVLGISGGQDSTLAGK Unmodified 1601.8625 0.86245047 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 36.725 35.06 2 3.9588E-20 17239 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 202.44 201.74 951790000 89391000 81069000 72410000 0 406200 0 143820000 124080000 116220000 0 0 0 49983000 44819000 39968000 0 0 0 69263000 62789000 57581000 0 0 0 18741 1154 18156 348504;348505;348506;348507;348508;348509;348510;348511;348512;348513;348514;348515;348516 212513;212514;212515;212516;212517;212518;212519;212520;212521;212522;212523;212524;212525 212514 13 SLVNLGGSK Unmodified 873.49198 0.4919813 11 CON__P04264 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.658 20.595 2 0.00011637 5989 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 133.86 71.145 1236200000 0 0 0 26056000 25255000 28954000 0 0 0 249730000 237220000 254430000 0 0 0 20045000 21968000 23009000 0 0 0 118900000 109470000 121150000 + 18742 11 18157 348517;348518;348519;348520;348521;348522;348523;348524;348525;348526;348527;348528 212526;212527;212528;212529;212530;212531;212532;212533;212534;212535;212536 212527 11 SLVNTYQEILK Unmodified 1306.7133 0.71326704 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.721 37.047 2 2.5842E-07 18460 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 161.79 144.56 6095700000 666810000 505960000 543470000 0 0 0 664320000 583670000 547220000 0 0 0 368040000 347890000 350780000 0 0 0 523880000 532430000 461220000 0 0 0 18743 1109 18158 348529;348530;348531;348532;348533;348534;348535;348536;348537;348538;348539;348540 212537;212538;212539;212540;212541;212542;212543;212544;212545;212546;212547;212548 212537 12 SLVQGMK Unmodified 761.41056 0.41055985 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 15.385 15.768 2 0.1313 4309 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 48.174 35.913 35413000 0 10726000 11457000 4240800 0 0 0 0 0 2027900 1946800 0 0 0 0 0 0 0 0 0 0 3102500 1911900 0 18744 335 18159 348541;348542;348543;348544;348545;348546;348547 212549 212549 1 SLVSDDK Unmodified 762.37595 0.37594848 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.618 12.45 1 0.044082 3267 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 96.19 90.28 218680000 19648000 13254000 17156000 0 0 0 24999000 20796000 26778000 0 0 0 17787000 18686000 14402000 0 0 0 15990000 15866000 13315000 0 0 0 18745 1741 18160 348548;348549;348550;348551;348552;348553;348554;348555;348556;348557;348558;348559 212550;212551;212552;212553;212554 212551 0 SLVSDDKK Unmodified 890.47091 0.4709115 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9.0597 9.8601 2 0.002418 2500 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.75 67.188 10098000000 1114800000 1255800000 0 1108900 1823900 947960 399110000 244780000 296270000 0 0 0 1366100000 1137400000 974600000 0 1833400 0 1108200000 1175700000 1019500000 0 0 0 18746 1741 18161 348560;348561;348562;348563;348564;348565;348566;348567;348568;348569;348570;348571;348572;348573;348574;348575;348576;348577 212555;212556;212557;212558;212559;212560;212561;212562;212563;212564;212565;212566;212567;212568 212565 14 SLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAEK Unmodified 3955.0565 0.056524996 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 2 By MS/MS By matching By matching By matching 1 1 1 1 54.754 53.439 4 0.10513 19585 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 36.016 35.752 41291000 0 0 0 14249000 11524000 11717000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3800700 18747 1741 18162 348578;348579;348580;348581 212569 212569 0 SLWDQGIILR Unmodified 1199.6663 0.66625727 138 P06986 hisC Histidinol-phosphate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.081 46.679 2 1.9832E-06 22867 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 159.04 121.48 214440000 36911000 30532000 30359000 0 0 0 14507000 18499000 14034000 0 0 0 14189000 0 14953000 0 0 0 12043000 14713000 13697000 0 0 0 18748 138 18163 348582;348583;348584;348585;348586;348587;348588;348589;348590;348591;348592;348593 212570;212571;212572;212573;212574;212575;212576;212577;212578;212579;212580;212581 212576 12 SLWHNVENR Unmodified 1153.5629 0.56285483 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.04 16.856 2;3 0.00027693 5891 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.86 112.17 400120000 22872000 28043000 35974000 0 0 0 37120000 42789000 36453000 0 0 0 30876000 29453000 27034000 0 0 0 39698000 34097000 35705000 0 0 0 18749 1548 18164 348594;348595;348596;348597;348598;348599;348600;348601;348602;348603;348604;348605;348606;348607;348608;348609;348610;348611;348612;348613;348614;348615;348616;348617 212582;212583;212584;212585;212586;212587;212588;212589;212590;212591;212592 212589 9 SLWQQGIDPK Unmodified 1170.6033 0.60332266 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 29.903 28.42 2 0.0021153 13701 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 80.787 69.964 138460000 0 0 0 0 627390 0 21821000 27310000 24299000 0 0 0 18172000 11947000 14896000 0 0 0 19393000 0 0 0 0 0 18750 1482 18165 348618;348619;348620;348621;348622;348623;348624;348625 212593;212594;212595;212596 212593 2 SLYAGAAHGPSPTAGEVLIMLGGPNPAEVR Unmodified 2931.4913 0.49127637 1870 P76541 eutL Ethanolamine utilization protein EutL yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 49.65 48.248 3 1.349E-16 23400 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.34 142.76 177130000 24941000 22673000 25724000 0 0 0 11464000 14659000 13419000 0 0 0 14477000 0 14300000 0 0 0 12300000 11967000 11208000 0 0 0 18751 1870 18166 348626;348627;348628;348629;348630;348631;348632;348633;348634;348635;348636 212597;212598;212599 212598 3 SLYEADLVDEAK Unmodified 1351.6507 0.65072636 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 2 32.833 31.416 2;3 2.7195E-05 15137 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.522 81.645 4483700000 0 12199000 0 0 0 0 15102000 12410000 14094000 0 0 0 720060000 646530000 630490000 0 0 0 773750000 856070000 802960000 0 0 0 18752 321 18167 348637;348638;348639;348640;348641;348642;348643;348644;348645;348646;348647;348648;348649;348650;348651;348652 212600;212601;212602;212603;212604;212605 212600 4 SLYEADLVDEAKR Unmodified 1507.7518 0.75183739 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 3 2 2 2 2 3 2 2 2 2 2 3 3 2 2 2 1 1 1 27.421 26.092 2;3 1.3502E-40 11737 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 290.2 280.2 18720000000 1737400000 1711700000 1436800000 8070200 6581200 10314000 2178600000 2032600000 2257500000 9890100 7180500 7831100 1113800000 1043300000 1057600000 0 0 0 1349400000 1442300000 1303700000 2301200 2394900 1191100 18753 321 18168 348653;348654;348655;348656;348657;348658;348659;348660;348661;348662;348663;348664;348665;348666;348667;348668;348669;348670;348671;348672;348673;348674;348675;348676;348677;348678;348679;348680;348681;348682;348683;348684;348685;348686;348687;348688;348689;348690;348691;348692;348693;348694;348695 212606;212607;212608;212609;212610;212611;212612;212613;212614;212615;212616;212617;212618;212619;212620;212621;212622;212623;212624;212625;212626;212627;212628;212629;212630;212631 212619 24 SLYGLGGSKR Unmodified 1036.5665 0.56654322 8 CON__P48668;CON__P02538;CON__P04259 yes no 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 15.534 15.589 2 0.0056727 4336 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 66.692 60.931 10936000 0 0 0 0 0 0 0 0 0 3593300 3760700 3581800 0 0 0 0 0 0 0 0 0 0 0 0 + 18754 8 18169 348696;348697;348698 212632;212633;212634 212632 3 SLYIPYAGPVLLEFPLLNK Unmodified 2146.2078 0.20781452 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.815 54.34 2 1.2412E-13 25876 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 136.3 135.37 357760000 0 17517000 22165000 0 0 0 4152900 2555200 6760200 0 0 0 50068000 49091000 58440000 0 0 0 29309000 60764000 56934000 0 0 0 18755 1283 18170 348699;348700;348701;348702;348703;348704;348705;348706;348707;348708;348709 212635;212636;212637;212638;212639 212638 5 SLYMTTVTADNILEGK Unmodified 1754.8761 0.87605162 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 1 1 1 1 1 1 45.628 44.198 2;3 2.4101E-14 21445 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 178.32 177.63 455850000 150840000 141300000 131110000 0 0 0 0 6464500 3183400 0 0 0 2316000 3320600 3793700 0 0 0 3815000 6152200 3553200 0 0 0 18756 1525 18171 348710;348711;348712;348713;348714;348715;348716;348717;348718;348719;348720;348721;348722;348723;348724 212640;212641;212642;212643;212644 212644 5 SLYNLGGSK Unmodified 937.4869 0.48689592 14 CON__P13647 no no 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 12.595 13.37 2 0.057849 2916 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 51.787 11.519 30970000 0 0 0 8960900 6359600 7654800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3558900 4435300 + 18757 14 18172 348725;348726;348727;348728;348729 212645;212646 212645 2 SLYSQLPAIDR Unmodified 1261.6667 0.6666512 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.495 33.938 2 0.00020058 16294 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 104.42 80.435 167650000 17663000 18218000 15811000 0 0 0 16271000 12864000 11849000 0 0 0 10846000 11964000 13989000 0 0 0 11683000 11561000 14927000 0 0 0 18758 389 18173 348730;348731;348732;348733;348734;348735;348736;348737;348738;348739;348740;348741 212647;212648;212649;212650;212651 212648 5 SLYVDTAPMR Unmodified 1151.5645 0.56449431 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.223 25.898 2 3.8052E-05 11252 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 141.39 131.4 443810000 52690000 57581000 54418000 2650400 0 0 39411000 36827000 36546000 3525000 3584200 3471200 24029000 19227000 18591000 0 0 0 29703000 29032000 29218000 0 0 3310800 18759 530 18174 348742;348743;348744;348745;348746;348747;348748;348749;348750;348751;348752;348753;348754;348755;348756;348757;348758 212652;212653;212654;212655;212656;212657;212658;212659;212660;212661;212662;212663 212662 12 SMAPLPEMVATSR Unmodified 1388.6792 0.67920649 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 36.25 34.631 2;3 3.263E-05 12071 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 103.08 95.955 112930000 0 0 0 40126000 36925000 35874000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18760 151 18175 348759;348760;348761;348762;348763;348764 212664;212665;212666;212667 212666 4 SMAVVGCDPSIMGYGPVPASK Unmodified 2121.9897 0.98971795 1168 P21151 fadA 3-ketoacyl-CoA thiolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 42.773 41.334 2 6.2179E-10 20280 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.41 150.45 118000000 43073000 37494000 37430000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18761 1168 18176 348765;348766;348767 212668;212669;212670 212668 3 SMDLEQECEQLR Unmodified 1536.6548 0.65484224 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 27.978 26.785 2 1.2636E-39 12275 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 282.18 282.18 897780000 29028000 30580000 30253000 0 0 0 16462000 12707000 18478000 39683000 44161000 45932000 15833000 13144000 16775000 152150000 84664000 84232000 24047000 24876000 28836000 69945000 60548000 55448000 18762 458 18177 348768;348769;348770;348771;348772;348773;348774;348775;348776;348777;348778;348779;348780;348781;348782;348783;348784;348785;348786;348787;348788;348789 212671;212672;212673;212674;212675;212676;212677;212678;212679;212680;212681;212682;212683;212684;212685;212686;212687;212688;212689;212690 212685 20 SMDLEQECEQLREELNETNSETK Oxidation (M) 2827.2124 0.21239649 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 6 5 1 6 7 6 1 1 5 8 5 40.2 38.844 2;3 2.0622E-35 13674 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 209.56 209.46 1336200000 0 0 0 0 0 0 0 0 0 97449000 81568000 102530000 2410000 0 0 291760000 175660000 212490000 5626900 0 2863400 122270000 116140000 125390000 18763 458 18178 348790;348791;348792;348793;348794;348795;348796;348797;348798;348799;348800;348801;348802;348803;348804;348805;348806;348807;348808;348809;348810;348811;348812;348813;348814;348815;348816;348817;348818;348819;348820;348821;348822;348823;348824;348825;348826;348827;348828;348829;348830;348831;348832;348833;348834;348835;348836;348837;348838;348839;348840;348841;348842 212691;212692;212693;212694;212695;212696;212697;212698;212699;212700;212701;212702;212703;212704;212705;212706;212707;212708;212709;212710;212711;212712;212713;212714;212715;212716;212717;212718;212719;212720;212721;212722;212723;212724;212725;212726;212727;212728;212729;212730;212731 212691 248 40 SMDLEQECEQLREELNETNSETK Unmodified 2811.2175 0.21748187 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 3 2 2 2 4 5 5 2 2 2 2 2 2 42.97 41.596 2;3;4 2.9878E-135 14808 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 445.14 441.37 31126000000 255950000 208330000 198080000 9229900 11813000 9468200 141520000 141010000 112820000 1720100000 1317400000 1529500000 158900000 145540000 155000000 5734400000 5665600000 5994600000 227820000 232300000 228240000 2451000000 2407700000 2069200000 18764 458 18178 348843;348844;348845;348846;348847;348848;348849;348850;348851;348852;348853;348854;348855;348856;348857;348858;348859;348860;348861;348862;348863;348864;348865;348866;348867;348868;348869;348870;348871;348872;348873;348874;348875;348876;348877;348878;348879;348880;348881;348882;348883;348884;348885;348886;348887;348888;348889;348890;348891;348892;348893;348894;348895;348896 212732;212733;212734;212735;212736;212737;212738;212739;212740;212741;212742;212743;212744;212745;212746;212747;212748;212749;212750;212751;212752;212753;212754;212755;212756;212757;212758;212759;212760;212761;212762;212763;212764;212765;212766;212767;212768;212769;212770;212771;212772;212773;212774;212775;212776;212777;212778;212779;212780;212781 212742 50 SMDLEQECEQLREELNETNSETKR Oxidation (M) 2983.3135 0.31350752 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 8 6 6 7 7 7 6 8 7 36.718 35.212 3;4 2.8173E-60 13628 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 257.29 257.29 1951800000 0 0 0 0 522310 0 0 0 0 198710000 138140000 100220000 0 0 0 343970000 293670000 330250000 0 0 0 199760000 241590000 104990000 18765 458 18179 348897;348898;348899;348900;348901;348902;348903;348904;348905;348906;348907;348908;348909;348910;348911;348912;348913;348914;348915;348916;348917;348918;348919;348920;348921;348922;348923;348924;348925;348926;348927;348928;348929;348930;348931;348932;348933;348934;348935;348936;348937;348938;348939;348940;348941;348942;348943;348944;348945;348946;348947;348948;348949;348950;348951;348952;348953;348954;348955;348956;348957;348958;348959 212782;212783;212784;212785;212786;212787;212788;212789;212790;212791;212792;212793;212794;212795;212796;212797;212798;212799;212800;212801;212802;212803;212804;212805;212806;212807;212808;212809;212810;212811;212812;212813;212814;212815;212816;212817;212818;212819;212820;212821;212822;212823;212824;212825;212826;212827;212828;212829;212830;212831;212832;212833;212834;212835;212836;212837;212838;212839;212840;212841;212842;212843;212844;212845;212846 212790 248 65 SMDLEQECEQLREELNETNSETKR Unmodified 2967.3186 0.3185929 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 3 4 4 2 2 2 3 3 3 38.937 37.428 2;3;4 1.27E-71 14651 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 274.86 273.96 33133000000 107410000 93298000 92551000 11888000 15604000 12685000 78363000 77951000 81834000 2192700000 1822100000 2045900000 80402000 77269000 73471000 2105700000 6985500000 7445600000 138320000 115490000 143900000 2810800000 3455400000 3069000000 18766 458 18179 348960;348961;348962;348963;348964;348965;348966;348967;348968;348969;348970;348971;348972;348973;348974;348975;348976;348977;348978;348979;348980;348981;348982;348983;348984;348985;348986;348987;348988;348989;348990;348991;348992;348993;348994;348995;348996;348997;348998;348999;349000;349001;349002;349003;349004;349005;349006;349007;349008;349009;349010;349011;349012;349013;349014;349015;349016;349017 212847;212848;212849;212850;212851;212852;212853;212854;212855;212856;212857;212858;212859;212860;212861;212862;212863;212864;212865;212866;212867;212868;212869;212870;212871;212872;212873;212874;212875;212876;212877;212878;212879;212880;212881;212882;212883;212884;212885;212886;212887;212888;212889;212890;212891;212892;212893;212894;212895;212896;212897;212898;212899;212900;212901;212902;212903 212868 57 SMDQINDTLVSSIK Unmodified 1549.7658 0.76577289 1546 P39835 gntT High-affinity gluconate transporter yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 38.986 36.95 2 6.1954E-05 14673 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 88.187 83.292 102050000 0 0 0 0 0 0 20071000 19466000 0 0 3114300 3306700 0 24634000 27282000 0 0 0 0 0 0 2360900 1815900 0 18767 1546 18180 349018;349019;349020;349021;349022;349023;349024;349025 212904 212904 1 SMDSVMAQYQK Unmodified 1286.5635 0.56350803 425 P0A8F4 udk Uridine kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.997 24.014 2 0.0017 10256 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 118.5 111.76 96603000 0 1975800 3717300 0 0 0 11684000 9377600 10904000 2183700 2823900 2462500 6797100 7039400 6607900 1235500 480010 694440 8011300 7597900 8914200 1145600 1558600 1393300 18768 425 18181 349026;349027;349028;349029;349030;349031;349032;349033;349034;349035;349036;349037;349038;349039;349040;349041;349042;349043;349044;349045 212905 212905 0 SMEKPSDHAPVWATFR Unmodified 1857.8832 0.88320269 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 26.682 25.768 3;4 4.0438E-07 11213 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 108.14 106.09 771210000 93577000 70311000 60238000 0 0 0 50621000 51072000 71758000 0 0 0 43608000 54049000 43805000 5974300 4703600 4890500 71968000 65273000 79366000 0 0 0 18769 197 18182 349046;349047;349048;349049;349050;349051;349052;349053;349054;349055;349056;349057;349058;349059;349060;349061;349062;349063;349064;349065;349066;349067;349068;349069;349070;349071;349072;349073;349074;349075 212906;212907;212908;212909;212910;212911;212912;212913;212914;212915;212916;212917 212916 12 SMEMSLR Unmodified 852.38336 0.38335882 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.121 20.399 2 0.0020276 8095 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.56 96.52 153380000 9131300 6387500 7693300 0 0 400720 8328300 6388400 7289800 0 1865000 2240000 9080400 7570900 6583800 14816000 13363000 14984000 13309000 10856000 13089000 0 0 0 18770 395 18183 349076;349077;349078;349079;349080;349081;349082;349083;349084;349085;349086;349087;349088;349089;349090;349091;349092;349093 212918 212918 1 SMGLVVED Unmodified 848.39497 0.39496937 350 P0A7J7 rplK 50S ribosomal protein L11 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 36.256 34.115 1 0.0024063 13351 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 110.63 100.33 261970000 0 0 0 0 9109700 0 57768000 57513000 47570000 14306000 15631000 15793000 0 0 0 0 0 0 0 0 0 14600000 16142000 13542000 18771 350 18184 349094;349095;349096;349097;349098;349099;349100;349101;349102;349103 212919;212920;212921 212919 2 SMIDTGIGGTGK Unmodified 1135.5543 0.55432356 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.907 22.349 2 1.3049E-05 9537 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 127.76 116.54 639590000 57075000 58021000 51903000 0 0 0 43275000 50500000 63520000 0 0 877010 53133000 41931000 44584000 0 0 0 60380000 57265000 57129000 0 0 0 18772 289 18185 349104;349105;349106;349107;349108;349109;349110;349111;349112;349113;349114;349115;349116 212922;212923;212924;212925;212926;212927;212928;212929;212930;212931;212932;212933 212926 12 SMIGQLLNVGPSER Unmodified 1499.7766 0.77661235 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.429 42.914 2 1.2963E-08 21320 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.15 146.26 330920000 27045000 24557000 21469000 0 0 0 31947000 31117000 24642000 0 0 0 18269000 18584000 18012000 0 0 0 37497000 37947000 39831000 0 0 0 18773 691 18186 349117;349118;349119;349120;349121;349122;349123;349124;349125;349126;349127;349128 212934;212935;212936;212937;212938;212939;212940;212941 212935 7 SMIHTVK Unmodified 814.43711 0.43710895 1761 P75682 yagE Probable 2-keto-3-deoxy-galactonate aldolase YagE yes yes 0 0 0 By MS/MS By MS/MS 1 1 11.337 12.06 2 0.021939 3097 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.189 66.86 25285000 0 12774000 12511000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18774 1761 18187 349129;349130 212942;212943 212942 2 SMIIVGAGLNHWYHLDMNYR Unmodified 2389.146 0.14597609 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 1 2 2 2 2 1 2 1 2 2 2 2 2 2 45.373 43.699 3;4 2.3227E-10 17135 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 122.49 121.55 436780000 4826700 5249400 5198500 3090600 3932400 4591600 20613000 13183000 21190000 28024000 27676000 20951000 8463800 13119000 6355100 0 0 0 26545000 19192000 15958000 68176000 66466000 53976000 18775 205 18188 349131;349132;349133;349134;349135;349136;349137;349138;349139;349140;349141;349142;349143;349144;349145;349146;349147;349148;349149;349150;349151;349152;349153;349154;349155;349156;349157;349158;349159;349160;349161;349162;349163;349164;349165;349166 212944;212945;212946;212947;212948;212949;212950;212951;212952;212953;212954;212955 212950 11 SMLDVVR Unmodified 818.43202 0.43202358 211 P09372 grpE Protein GrpE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 1 1 1 2 27.9 26.642 1;2 0.00097355 11509 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 139.92 89.797 6708900000 638580000 539970000 506220000 13032000 14022000 13983000 574880000 566620000 539110000 62273000 63687000 62304000 469160000 450660000 420670000 10943000 9158000 8073900 544340000 603140000 539550000 19582000 16612000 22357000 18776 211 18189 349167;349168;349169;349170;349171;349172;349173;349174;349175;349176;349177;349178;349179;349180;349181;349182;349183;349184;349185;349186;349187;349188;349189;349190;349191;349192;349193;349194;349195;349196;349197;349198;349199;349200;349201;349202;349203;349204;349205;349206 212956;212957;212958;212959;212960;212961;212962;212963;212964;212965;212966;212967;212968;212969;212970;212971;212972;212973;212974;212975;212976;212977;212978;212979;212980 212980 25 SMLDVVR Oxidation (M) 834.42694 0.4269382 211 P09372 grpE Protein GrpE yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 27.728 26.647 2 0.12119 11670 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 54.787 27.666 31968000 7336300 0 2672100 0 0 316230 0 5177800 0 0 0 0 3593600 4836000 3134100 0 0 0 0 4901900 0 0 0 0 18777 211 18189 349207;349208;349209;349210;349211;349212;349213;349214 212981 212981 1 SMLENVMLTDSVETHK Unmodified 1832.8648 0.86483501 1847 P76290 cmoA tRNA (cmo5U34)-methyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 36.288 34.695 2 1.9877E-09 16557 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 122.46 89.835 53408000 5236600 5052600 0 0 0 0 6862300 7282200 6464600 0 0 0 2871200 3153300 3125100 0 0 0 4059100 5196300 4105200 0 0 0 18778 1847 18190 349215;349216;349217;349218;349219;349220;349221;349222;349223;349224;349225 212982;212983;212984 212983 0 SMLLLNLINK Unmodified 1157.6842 0.68421552 964 P0AFW0 rfaH Transcription antitermination protein RfaH yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.682 49.627 2 1.3486E-05 18837 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 152.47 143.56 117590000 11237000 9810600 7306900 951340 1226900 1081400 4044400 4968500 4816200 0 0 0 3450100 3819200 3744900 16367000 9243200 12560000 5969400 6491500 9239600 0 1257300 0 18779 964 18191 349226;349227;349228;349229;349230;349231;349232;349233;349234;349235;349236;349237;349238;349239;349240;349241;349242;349243;349244 212985;212986;212987;212988;212989;212990;212991;212992;212993 212985 7 SMLNPGSALLTLSYLGAER Unmodified 1992.035 0.035011883 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 54.924 53.475 2;3 6.8682E-68 25247 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 311.95 307.61 6639000000 610930000 565220000 569120000 6669300 5255600 5328100 485570000 453120000 482100000 2217800 0 2145500 598550000 555790000 539530000 0 0 0 602020000 591740000 563710000 0 0 0 18780 869 18192 349245;349246;349247;349248;349249;349250;349251;349252;349253;349254;349255;349256;349257;349258;349259;349260;349261;349262;349263;349264;349265;349266;349267;349268;349269;349270;349271;349272;349273;349274;349275;349276 212994;212995;212996;212997;212998;212999;213000;213001;213002;213003;213004;213005;213006;213007;213008;213009;213010;213011;213012;213013;213014;213015;213016 213016 23 SMNDALITR Unmodified 1019.507 0.50697943 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.8 21.687 2 0.00029263 8907 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 118.5 106.73 170920000 3320700 2297400 3684800 0 1064500 1225300 11917000 14326000 11391000 12463000 13886000 8089400 10955000 8166700 8650100 3042500 2908500 2247700 12329000 13678000 11947000 3323100 4482000 5522400 18781 143 18193 349277;349278;349279;349280;349281;349282;349283;349284;349285;349286;349287;349288;349289;349290;349291;349292;349293;349294;349295;349296;349297;349298;349299 213017;213018;213019;213020;213021;213022;213023;213024;213025 213024 9 SMNTGYAGVQNPLFFK Unmodified 1772.8556 0.85559095 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 44.093 42.548 2 4.7024E-10 21074 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 174.84 174.84 596970000 17387000 14806000 14348000 5589100 4784300 4551300 66308000 52057000 62664000 20782000 17491000 18007000 45517000 44650000 45816000 4633200 2670500 3300900 43907000 40737000 46876000 7000800 4885100 8196300 18782 633 18194 349300;349301;349302;349303;349304;349305;349306;349307;349308;349309;349310;349311;349312;349313;349314;349315;349316;349317;349318;349319;349320;349321;349322;349323;349324;349325 213026;213027;213028;213029;213030;213031;213032;213033;213034;213035;213036;213037;213038;213039;213040 213031 15 SMQDPIADMLTR Unmodified 1376.6428 0.64282099 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 45.233 43.81 2;3 3.0549E-08 17214 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 164.33 162.84 4285500000 774640000 739780000 770660000 18888000 18961000 17810000 218720000 200990000 202180000 46483000 54097000 38672000 260900000 224540000 215660000 26622000 22747000 22797000 5130000 5723200 337020000 19341000 20352000 22762000 18783 377 18195 349326;349327;349328;349329;349330;349331;349332;349333;349334;349335;349336;349337;349338;349339;349340;349341;349342;349343;349344;349345;349346;349347;349348;349349;349350;349351;349352;349353;349354;349355;349356;349357 213041;213042;213043;213044;213045;213046;213047;213048;213049;213050;213051;213052;213053 213049 13 SMQDPIADMLTR Oxidation (M) 1392.6377 0.63773561 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 1 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 40.076 38.491 2 0.00011872 18443 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 96.171 89.043 81362000 10978000 12106000 13311000 0 0 0 7859100 6780100 0 0 2878200 0 5447600 4320200 0 1190500 0 0 8299900 0 8191300 0 0 0 18784 377 18195 349358;349359;349360;349361;349362;349363;349364;349365;349366;349367;349368 213054;213055;213056;213057;213058 213056 162 4 SMQEVAMSSQEASK Unmodified 1511.6596 0.65959326 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.011 17.598 2 3.931E-27 6035 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 245.58 243.16 293920000 17852000 18469000 14685000 0 0 0 22317000 18373000 18647000 1164300 0 0 27807000 25170000 27374000 589380 0 316500 34933000 33487000 32735000 0 0 0 18785 1172 18196 349369;349370;349371;349372;349373;349374;349375;349376;349377;349378;349379;349380;349381;349382;349383 213059;213060;213061;213062;213063;213064;213065;213066;213067 213065 9 SMQFALDHLR Unmodified 1216.6023 0.6022768 1873 P76561 ypfH Esterase YpfH yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.168 28.804 3 0.001468 11398 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 60.064 56.877 285340000 27898000 27798000 24351000 1633100 2498700 0 29897000 26206000 26478000 7488600 8821400 8087500 11737000 13509000 10372000 1691300 1541200 1984900 18225000 15223000 16228000 0 1877100 1795800 18786 1873 18197 349384;349385;349386;349387;349388;349389;349390;349391;349392;349393;349394;349395;349396;349397;349398;349399;349400;349401;349402;349403;349404;349405 213068;213069;213070;213071 213069 4 SMQGMENAK Unmodified 994.4212 0.42120089 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.523 12.356 2 0.00041638 3340 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.81 103.46 158220000 14491000 11510000 10892000 0 0 0 11109000 11155000 10653000 0 0 0 11564000 11407000 10012000 0 0 0 21194000 16984000 17245000 0 0 0 18787 280 18198 349406;349407;349408;349409;349410;349411;349412;349413;349414;349415;349416;349417 213072;213073;213074;213075;213076 213072 4 SMQPWHFFVIEGEGR Unmodified 1818.8512 0.85117428 756 P0ACY1 ydjA Putative NAD(P)H nitroreductase YdjA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 46.464 45.048 2;3 4.5897E-06 22089 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.211 88.109 683860000 82082000 84949000 77864000 0 0 0 63272000 60177000 62986000 0 0 0 37050000 35794000 29964000 0 0 0 48657000 52066000 48995000 0 0 0 18788 756 18199 349418;349419;349420;349421;349422;349423;349424;349425;349426;349427;349428;349429;349430;349431;349432;349433;349434;349435 213077;213078;213079;213080;213081;213082;213083;213084;213085;213086;213087 213080 8 SMQPWHFFVIEGEGRER Unmodified 2103.9949 0.9948784 756 P0ACY1 ydjA Putative NAD(P)H nitroreductase YdjA yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.559 28.938 3 0.16382 13279 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 15.155 11.435 324890000 46734000 41579000 36357000 0 0 0 13351000 15246000 13941000 2351700 2454500 2502400 0 22275000 22258000 0 0 0 30838000 34318000 32196000 3948700 0 4539700 18789 756 18200 349436;349437;349438;349439;349440;349441;349442;349443;349444;349445;349446;349447;349448;349449;349450;349451 213088 213088 1 SMSAGLTR Unmodified 821.40654 0.40653711 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.057 13.915 2 0.0012638 4200 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.31 94.929 470740000 40568000 35407000 34212000 0 0 0 38957000 43166000 42464000 0 0 0 33137000 35122000 33840000 0 0 0 49644000 42497000 41722000 0 0 0 18790 828 18201 349452;349453;349454;349455;349456;349457;349458;349459;349460;349461;349462;349463 213089;213090;213091;213092;213093;213094;213095;213096;213097;213098;213099 213093 11 SMSPAVEK Unmodified 847.41095 0.41095378 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.737 12.644 2 0.0032013 3496 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 94.114 68.288 3159200000 0 376780000 371840000 3329500 3741400 3207300 379050000 376440000 0 0 0 0 264040000 227160000 267270000 0 0 0 279090000 295430000 311780000 0 0 0 18791 385 18202 349464;349465;349466;349467;349468;349469;349470;349471;349472;349473;349474;349475;349476;349477 213100;213101;213102;213103;213104;213105;213106;213107 213101 8 SMSYQEAMELSYFGAK Unmodified 1840.8012 0.80117212 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.397 44.932 2 2.502E-18 21993 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.58 186.02 199690000 33664000 29630000 26749000 0 891980 0 9459600 0 8506700 0 0 0 11225000 10201000 10371000 0 0 0 22248000 18512000 18231000 0 0 0 18792 34 18203 349478;349479;349480;349481;349482;349483;349484;349485;349486;349487;349488;349489 213108;213109;213110;213111;213112;213113;213114;213115;213116 213108 9 SMVELDALAK Unmodified 1075.5583 0.5583463 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 35.181 33.548 2 0.083137 16095 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.334 32.177 40026000 10417000 0 9877000 0 0 0 7987900 6338700 5405100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18793 1377 18204 349490;349491;349492;349493;349494 213117 213117 0 SMVETAPSK Unmodified 948.45863 0.45863226 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.215 12.81 2 0.00035747 2885 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 112.84 91.14 2018400000 0 0 0 3260900 2483000 3776400 122470000 0 138940000 120160000 109760000 92687000 156010000 152360000 146890000 42545000 30038000 33870000 237150000 194640000 224150000 71939000 68960000 66318000 18794 594 18205 349495;349496;349497;349498;349499;349500;349501;349502;349503;349504;349505;349506;349507;349508;349509;349510;349511;349512;349513;349514 213118;213119;213120;213121;213122;213123;213124;213125;213126;213127 213125 8 SMVETAPSK Oxidation (M) 964.45355 0.45354688 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 1 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 10.6 11.251 2 0.0081785 2674 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 67.897 53.362 172040000 0 0 0 0 0 0 21848000 18744000 14809000 5793100 4539000 3543200 12103000 10546000 11976000 0 0 0 26191000 15834000 20383000 0 0 5728700 18795 594 18205 349515;349516;349517;349518;349519;349520;349521;349522;349523;349524;349525;349526;349527 213128;213129;213130;213131;213132;213133;213134;213135;213136 213133 344 7 SMVETAPSK Acetyl (Protein N-term) 990.4692 0.46919694 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 1 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 22.035 21.777 2 0.054675 7155 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 45.161 41.024 16113000 0 0 0 0 0 0 0 0 0 2431200 3401400 2520600 0 1771000 1626000 0 0 0 0 1926400 0 0 1385400 1051500 18796 594 18205 349528;349529;349530;349531;349532;349533;349534;349535 213137 213137 1 SMVMTEAQK Unmodified 1023.4729 0.47290211 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.108 14.645 2 5.961E-05 4572 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.54 106.44 540800000 16035000 21186000 20470000 18870000 16515000 19509000 63999000 61977000 0 21494000 22909000 23423000 0 59579000 48908000 4465500 3787800 3513200 66878000 0 0 15704000 16569000 15009000 18797 595 18206 349536;349537;349538;349539;349540;349541;349542;349543;349544;349545;349546;349547;349548;349549;349550;349551;349552;349553;349554;349555;349556 213138;213139;213140;213141;213142;213143;213144;213145;213146;213147 213147 10 SMVMTEAQK Oxidation (M) 1039.4678 0.46781673 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 1 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 11.382 12.225 2 0.0055085 3258 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 75.738 70.079 28070000 0 0 0 0 0 0 7622600 0 7681300 0 0 0 3230700 0 0 0 0 0 5980800 3554700 0 0 0 0 18798 595 18206 349557;349558;349559;349560;349561 213148 213148 345 0 SMWGFLK Unmodified 867.4313 0.43129529 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.957 41.098 2 0.025713 20471 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 71.378 22.617 119320000 4433000 4363500 3217000 1026000 1285200 1351900 13037000 11787000 11461000 3898100 4389100 3556200 7381700 9221800 6801500 0 0 0 7853300 9458800 8246000 2492300 1770800 2287900 18799 1447 18207 349562;349563;349564;349565;349566;349567;349568;349569;349570;349571;349572;349573;349574;349575;349576;349577;349578;349579;349580;349581;349582 213149;213150;213151;213152;213153;213154;213155;213156;213157;213158;213159 213153 11 SNAIVYAK Unmodified 864.47052 0.47051757 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.544 14.439 2 0.032064 4569 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 63.565 41.883 569110000 173720000 143300000 146110000 983680 0 813900 0 10121000 8175700 0 0 0 13212000 0 11409000 0 0 0 22019000 20866000 18390000 0 0 0 18800 1111 18208 349583;349584;349585;349586;349587;349588;349589;349590;349591;349592;349593;349594 213160 213160 1 SNALVFEAK Unmodified 977.5182 0.51819605 1563 P43671 pqiB Paraquat-inducible protein B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.83 22.95 2 0.076069 10313 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 53.751 38.381 431690000 66431000 54615000 50698000 0 0 0 5884300 39689000 6986100 0 0 0 29942000 28139000 31057000 0 0 0 41370000 39392000 37484000 0 0 0 18801 1563 18209 349595;349596;349597;349598;349599;349600;349601;349602;349603;349604;349605;349606 213161;213162 213161 0 SNCLITHQPDWGSLQIQYR Unmodified 2315.1117 0.11169907 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.967 38.302 3 5.9312E-14 17897 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 135.24 132.08 471240000 40646000 45179000 40398000 0 0 0 37785000 33716000 34551000 0 0 0 37670000 28193000 32548000 0 0 0 46760000 48836000 44960000 0 0 0 18802 1966 18210 349607;349608;349609;349610;349611;349612;349613;349614;349615;349616;349617;349618 213163;213164;213165;213166;213167;213168;213169;213170;213171;213172 213171 10 SNDADPGLNVK Unmodified 1128.5411 0.54111633 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.194 16.031 2 0.00023067 5423 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.57 100.57 418830000 110960000 111730000 100990000 429910 558010 352650 12863000 11226000 11898000 0 0 0 16768000 10081000 11971000 0 0 0 0 0 19011000 0 0 0 18803 1107 18211 349619;349620;349621;349622;349623;349624;349625;349626;349627;349628;349629;349630;349631 213173;213174;213175;213176 213174 4 SNDIPGAFDAANSMLVQHPEVK Unmodified 2339.1216 0.12159506 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.22 39.594 3 9.2557E-07 19405 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 99.366 99.224 489520000 162970000 151480000 145470000 0 0 0 4929700 5488800 0 0 0 0 3548200 3095800 2479900 0 0 0 3447200 2667800 3933400 0 0 0 18804 71 18212 349632;349633;349634;349635;349636;349637;349638;349639;349640;349641;349642 213177;213178;213179 213177 3 SNDITALRPYLSDK Unmodified 1591.8206 0.82058566 1776 P75818 ybjP Uncharacterized lipoprotein YbjP yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 31.972 30.281 2 3.9415E-05 11638 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 94.688 87.559 25353000 3485700 3356700 4949000 1873300 1255600 1648100 0 0 0 1554600 3816500 2730900 0 0 0 0 0 0 0 0 0 0 682600 0 18805 1776 18213 349643;349644;349645;349646;349647;349648;349649;349650;349651;349652 213180 213180 1 SNDLTVNCLTGK Unmodified 1320.6344 0.63436479 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.077 24.966 2 5.8611E-12 11354 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 194.12 186.31 2176600000 141460000 145350000 134070000 2053300 2697300 2410600 194860000 173480000 178640000 2778300 2809400 2635700 206270000 183590000 185720000 2936800 1729100 1839600 187640000 209200000 204310000 3815900 2771700 3493800 18806 1388 18214 349653;349654;349655;349656;349657;349658;349659;349660;349661;349662;349663;349664;349665;349666;349667;349668;349669;349670;349671;349672;349673;349674;349675;349676 213181;213182;213183;213184;213185;213186;213187;213188;213189;213190;213191;213192;213193;213194;213195;213196;213197;213198;213199;213200;213201 213187 18 SNDTPFDALWQR Unmodified 1448.6684 0.66844211 1162 P19931 hyaE Hydrogenase-1 operon protein HyaE yes yes 0 0 0 By MS/MS By matching 1 1 47.896 46.119 2 0.00073512 22936 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.017 78.862 7887800 0 0 0 0 0 0 4418400 3469400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18807 1162 18215 349677;349678 213202 213202 1 SNDVSLPILVLTAR Unmodified 1496.8562 0.85624288 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 1 2 2 2 1 2 2 2 2 2 53.614 52.421 2;3 1.0493E-05 25669 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 94.461 88.092 1106400000 103310000 105840000 107970000 5431600 5685100 4234800 50946000 69668000 69416000 5539400 0 0 68009000 77028000 72997000 29253000 33983000 34523000 94083000 90373000 78135000 0 0 0 18808 1214 18216 349679;349680;349681;349682;349683;349684;349685;349686;349687;349688;349689;349690;349691;349692;349693;349694;349695;349696;349697;349698;349699;349700;349701;349702;349703;349704;349705;349706;349707;349708;349709;349710 213203;213204;213205;213206;213207;213208;213209;213210;213211;213212;213213;213214;213215;213216;213217;213218;213219;213220;213221 213208 18 SNEEIEVMFK Unmodified 1224.5696 0.56963927 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.085 33.584 2 6.6438E-05 11298 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 133.57 125.64 207440000 0 10822000 10615000 2009700 1801600 2086700 3441500 0 4305700 3385000 2403700 2836000 5791500 5720100 5667400 53441000 39148000 43639000 0 0 4117200 2595700 1818600 1795900 18809 515 18217 349711;349712;349713;349714;349715;349716;349717;349718;349719;349720;349721;349722;349723;349724;349725;349726;349727;349728;349729;349730 213222;213223;213224;213225;213226;213227;213228 213223 4 SNEYANLVGGER Unmodified 1307.6106 0.61059288 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.328 23.423 2 1.1189E-11 10310 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 185.96 181.35 1492000000 167320000 154790000 170200000 5679200 5274700 5459000 91734000 93404000 74465000 14776000 14326000 13838000 84854000 74990000 83658000 4330500 2989400 3498200 139760000 134950000 127380000 8488800 8381300 7452700 18810 1210 18218 349731;349732;349733;349734;349735;349736;349737;349738;349739;349740;349741;349742;349743;349744;349745;349746;349747;349748;349749;349750;349751;349752;349753;349754 213229;213230;213231;213232;213233;213234;213235;213236;213237;213238;213239;213240;213241;213242;213243;213244;213245 213241 17 SNEYANLVGGERYEPDEENPMLGFR Unmodified 2885.2926 0.29263615 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.747 42.248 3 3.2542E-22 16899 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 168.57 168.57 125150000 0 0 0 9691000 7119700 6410100 0 0 0 18722000 14190000 13677000 0 0 0 9407400 8647400 7851800 0 0 0 12370000 8591400 8470400 18811 1210 18219 349755;349756;349757;349758;349759;349760;349761;349762;349763;349764;349765;349766 213246;213247;213248;213249;213250;213251;213252;213253;213254;213255 213248 10 SNFDAMSGQYYAR Unmodified 1508.6354 0.63542742 1879 P76621 csiD Protein CsiD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 28.844 27.57 2 2.0453E-40 12592 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 286.73 286.73 154280000 33899000 37382000 26253000 0 0 0 12986000 12315000 12887000 0 0 0 2627300 0 2343300 0 0 0 4147300 4527700 4913500 0 0 0 18812 1879 18220 349767;349768;349769;349770;349771;349772;349773;349774;349775;349776;349777 213256;213257;213258;213259;213260;213261 213261 6 SNFDVLTR Unmodified 950.48214 0.48214489 1530 P39356 yjhU Uncharacterized transcriptional regulator YjhU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.187 25.944 2 0.01238 9523 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 75.213 48.251 70432000 9236300 9100200 8421400 737050 867610 0 0 8264100 0 0 0 4123200 0 3494400 4474600 0 0 0 7716200 0 8050500 2144600 1732600 2069300 18813 1530 18221 349778;349779;349780;349781;349782;349783;349784;349785;349786;349787;349788;349789;349790;349791 213262 213262 1 SNHHGALIQAGATPVYLEASR Unmodified 2191.1134 0.11341363 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.293 24.237 4 0.13485 10363 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 12.817 6.8459 71573000 5467900 0 0 0 0 0 0 7542200 7911000 0 0 0 6261300 6831800 4643000 0 0 0 11755000 11923000 9237900 0 0 0 18814 1171 18222 349792;349793;349794;349795;349796;349797;349798;349799;349800 213263 213263 1 SNIEEVR Unmodified 845.4243 0.42429566 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 12.111 12.939 2 7.8974E-05 3602 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 129.68 89.725 1985700000 158100000 168380000 157960000 0 0 0 230490000 0 208350000 0 0 0 153940000 139090000 150830000 0 0 0 207070000 210470000 201000000 0 0 0 18815 1137 18223 349801;349802;349803;349804;349805;349806;349807;349808;349809;349810;349811;349812;349813 213264;213265;213266;213267;213268;213269;213270;213271;213272;213273;213274 213265 11 SNILIINGAK Unmodified 1041.6182 0.61824444 897 P0AEY5 mdaB Modulator of drug activity B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.23 26.852 2 0.0027088 11557 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 77.318 55.467 164230000 14597000 8339000 12771000 2934000 2493000 2127800 11836000 16146000 13624000 2382600 1911800 1696400 11923000 9772500 9965400 0 0 0 16076000 12996000 11316000 0 0 1324100 18816 897 18224 349814;349815;349816;349817;349818;349819;349820;349821;349822;349823;349824;349825;349826;349827;349828;349829;349830;349831;349832 213275;213276;213277;213278;213279;213280;213281;213282;213283;213284 213284 5 SNILLIGPTGSGK Unmodified 1255.7136 0.71360139 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.262 32.793 2 6.6871E-09 15619 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 167.11 148.58 2101400000 170610000 159350000 158570000 3483700 3835800 5011400 194290000 184120000 175680000 18715000 18284000 15184000 142650000 139770000 145330000 6632800 4137600 4237700 175620000 180880000 174920000 5914500 7543900 6686900 18817 244 18225 349833;349834;349835;349836;349837;349838;349839;349840;349841;349842;349843;349844;349845;349846;349847;349848;349849;349850;349851;349852;349853;349854;349855;349856 213285;213286;213287;213288;213289;213290;213291;213292;213293;213294;213295;213296;213297;213298;213299;213300;213301;213302;213303;213304;213305;213306;213307;213308 213298 21 SNIQCGSVLLPEMK Unmodified 1574.7796 0.77964882 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.795 35.027 2 1.0807E-10 16874 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 157.74 156.15 685580000 74706000 65284000 63229000 844120 889300 829920 49879000 51034000 51501000 1231300 1414500 1634600 46870000 57648000 56727000 0 0 0 48861000 55984000 56576000 0 0 441930 18818 948 18226 349857;349858;349859;349860;349861;349862;349863;349864;349865;349866;349867;349868;349869;349870;349871;349872;349873;349874;349875 213309;213310;213311;213312;213313;213314;213315;213316;213317;213318;213319;213320 213312 12 SNKPFHYQAPFPLK Unmodified 1672.8726 0.87256165 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 2 2 3 2 3 25.745 24.698 2;3;4 0.000132 10914 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 80.746 76.575 980320000 167760000 150700000 153270000 0 0 0 36118000 39584000 36640000 0 0 0 60380000 51656000 44465000 0 0 0 83950000 76589000 79213000 0 0 0 18819 696 18227 349876;349877;349878;349879;349880;349881;349882;349883;349884;349885;349886;349887;349888;349889;349890;349891;349892;349893;349894;349895;349896;349897;349898;349899;349900;349901;349902;349903;349904;349905 213321;213322;213323;213324;213325;213326;213327;213328;213329;213330;213331;213332;213333;213334;213335;213336 213332 14 SNKPFHYQAPFPLKK Unmodified 1800.9675 0.96752467 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 1 1 1 2 2 1 1 2 2 2 2 2 2 1 19.626 20.03 3;4 3.7665E-06 7669 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.2 97.595 434390000 64456000 82741000 17488000 1156000 2431300 2051500 20497000 15012000 24960000 2782700 0 1836900 22326000 22141000 25603000 0 0 0 50538000 34429000 41828000 2110500 0 0 18820 696 18228 349906;349907;349908;349909;349910;349911;349912;349913;349914;349915;349916;349917;349918;349919;349920;349921;349922;349923;349924;349925;349926;349927;349928;349929;349930;349931;349932;349933 213337;213338;213339;213340;213341;213342;213343 213340 7 SNKPFIYQAPFPMGK Unmodified 1723.8756 0.87559811 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 1 2 2 2 1 1 1 36.412 34.661 2;3 8.5081E-07 17149 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.12 149.92 284740000 0 0 1889000 0 0 0 54948000 51102000 57500000 1098800 1550400 0 35205000 31365000 30780000 0 0 0 6739500 6697300 5862300 0 0 0 18821 1097 18229 349934;349935;349936;349937;349938;349939;349940;349941;349942;349943;349944;349945;349946;349947;349948;349949;349950;349951 213344;213345;213346;213347;213348;213349;213350;213351;213352 213345 8 SNLEDGVAFAIEK Unmodified 1391.6933 0.69325988 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.637 36.776 2 8.0418E-11 17824 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 134.13 123.9 235480000 0 39424000 0 398510 0 616730 45834000 49147000 51205000 0 0 0 0 0 0 0 0 0 48852000 0 0 0 0 0 18822 473 18230 349952;349953;349954;349955;349956;349957;349958;349959;349960;349961;349962;349963;349964;349965 213353;213354;213355;213356;213357;213358;213359;213360;213361;213362;213363;213364 213357 12 SNLFQGSWNFER Unmodified 1483.6844 0.68442653 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 43.66 42.117 2 1.28E-08 14908 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 173.64 156.32 1663700000 25922000 22807000 17551000 9099200 9645800 9412300 201850000 196450000 191920000 115040000 112880000 108160000 81588000 73134000 69315000 16827000 9861000 10588000 92770000 102380000 103230000 27121000 27488000 28677000 18823 1747 18231 349966;349967;349968;349969;349970;349971;349972;349973;349974;349975;349976;349977;349978;349979;349980;349981;349982;349983;349984;349985;349986;349987;349988;349989;349990;349991 213365;213366;213367;213368;213369;213370;213371;213372;213373;213374;213375;213376;213377;213378;213379 213367 15 SNLIGMGILPLEFPQGVTR Unmodified 2041.103 0.10303187 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 1 2 2 2 1 2 2 1 55.038 53.568 2;3 2.3243E-22 26350 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 230.57 225.29 1312200000 386120000 360240000 314810000 0 0 0 50614000 33787000 46077000 0 0 0 15264000 14465000 12138000 0 0 0 32425000 28511000 17724000 0 0 0 18824 1254 18232 349992;349993;349994;349995;349996;349997;349998;349999;350000;350001;350002;350003;350004;350005;350006;350007;350008;350009;350010;350011;350012 213380;213381;213382;213383;213384;213385;213386;213387 213386 7 SNLLGSSGK Unmodified 861.4556 0.45559579 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.575 14.17 2 0.00032705 3778 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 115.49 109.96 721810000 0 19129000 16001000 6990300 5126600 0 55379000 58575000 61520000 22978000 22022000 20383000 39058000 32848000 33286000 0 4038700 4106900 53864000 52136000 42456000 57016000 63577000 51323000 18825 205;1157 18233 350013;350014;350015;350016;350017;350018;350019;350020;350021;350022;350023;350024;350025;350026;350027;350028;350029;350030;350031;350032;350033;350034;350035 213388;213389;213390;213391;213392;213393;213394;213395;213396;213397;213398;213399 213391 12 SNLPSVFR Unmodified 918.49232 0.49231565 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.769 27.41 2 0.00069413 10402 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 127.12 114.08 982240000 99400000 90247000 88075000 2812400 2240700 2474600 87872000 89264000 73613000 15192000 16519000 14720000 46268000 50184000 41479000 0 2849400 2658500 71062000 81354000 67151000 12374000 13318000 11109000 18826 1408 18234 350036;350037;350038;350039;350040;350041;350042;350043;350044;350045;350046;350047;350048;350049;350050;350051;350052;350053;350054;350055;350056;350057;350058 213400;213401;213402;213403;213404;213405;213406;213407;213408;213409;213410;213411;213412;213413 213401 14 SNMASADQPSVMDEAYK Unmodified 1842.7764 0.77641393 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.92 25.772 2 9.4664E-09 11257 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 124.51 118.67 56978000 3249800 3438300 1532900 0 0 0 5667300 4751200 4093500 0 0 0 3528000 3818700 4341100 0 0 0 8276700 7592300 6688400 0 0 0 18827 975 18235 350059;350060;350061;350062;350063;350064;350065;350066;350067;350068;350069;350070 213414 213414 1 SNNEFHQRR Unmodified 1186.5592 0.55916643 1592 P50457 puuE 4-aminobutyrate aminotransferase PuuE yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 11.65 11.768 3 0.094473 2497 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 33.263 26.958 377680000 0 0 0 0 0 0 0 0 0 11002000 0 7004100 0 0 0 33095000 44790000 49274000 0 0 0 216490000 0 16027000 18828 1592 18236 350071;350072;350073;350074;350075;350076;350077 213415;213416;213417 213415 3 SNNQVRPVTLTR Unmodified 1383.7583 0.75826017 1049 P0CG19 rph Inactive ribonuclease PH yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 1 1 1 2 1 1 2 2 2 14.252 14.695 2;3 2.6664E-07 3948 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 131.69 126.54 121940000 0 1757500 0 1639800 1741100 1431400 0 0 0 13332000 12247000 12308000 8966800 0 0 2765300 2516200 2275500 20336000 7733600 5795300 9958400 9118000 8022300 18829 1049 18237 350078;350079;350080;350081;350082;350083;350084;350085;350086;350087;350088;350089;350090;350091;350092;350093;350094;350095;350096;350097;350098;350099;350100;350101;350102 213418;213419;213420;213421;213422 213419 5 SNNTEPTWFPDSQNLAFTSDQAGRPQVYK Unmodified 3297.5327 0.5326835 398 P0A855 tolB Protein TolB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 1 2 2 2 2 1 2 1 2 2 2 2 2 2 43.477 41.773 3;4 6.9878E-23 19547 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 164.7 160.65 898370000 101300000 89479000 53300000 12679000 9933000 10132000 32369000 53208000 37475000 20961000 20476000 20760000 53597000 41716000 51092000 3789400 0 0 86907000 76260000 69905000 19267000 15131000 18636000 18830 398 18238 350103;350104;350105;350106;350107;350108;350109;350110;350111;350112;350113;350114;350115;350116;350117;350118;350119;350120;350121;350122;350123;350124;350125;350126;350127;350128;350129;350130;350131;350132;350133;350134;350135;350136;350137;350138;350139;350140;350141 213423;213424;213425;213426;213427;213428;213429;213430;213431;213432;213433;213434;213435;213436;213437;213438;213439;213440;213441 213440 19 SNPATYTGVFTPVR Unmodified 1508.7623 0.7623425 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 1 1 1 1 33.786 32.601 2;3 7.3922E-11 11464 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 202.65 198.19 322600000 4531700 26533000 2576300 1706400 1657700 1705000 22810000 19506000 18645000 0 0 0 13390000 11867000 12825000 56313000 28903000 33366000 21275000 19668000 15988000 3732200 2719300 2880200 18831 222 18239 350142;350143;350144;350145;350146;350147;350148;350149;350150;350151;350152;350153;350154;350155;350156;350157;350158;350159;350160;350161;350162;350163;350164;350165;350166;350167 213442;213443;213444;213445;213446;213447;213448;213449;213450;213451;213452;213453;213454;213455;213456;213457;213458;213459 213442 17 SNPLGEDFDYR Unmodified 1311.5731 0.57314474 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.433 31.094 2 1.8427E-07 14900 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 167.12 162.16 1312800000 123060000 121730000 102120000 0 0 0 162000000 172190000 169980000 0 0 0 73594000 71791000 74898000 0 0 0 83744000 81044000 76665000 0 0 0 18832 1086 18240 350168;350169;350170;350171;350172;350173;350174;350175;350176;350177;350178;350179 213460;213461;213462;213463;213464;213465;213466;213467;213468;213469;213470;213471 213461 12 SNPLGEDFDYRK Unmodified 1439.6681 0.66810776 1086 P13029 katG Catalase-peroxidase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 2 2 2 1 1 1 1 1 1 1 24.138 23.081 2;3 0.00013429 10316 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 92.409 88.111 857600000 0 0 12185000 0 0 0 180830000 182670000 167000000 0 1517200 0 52217000 40339000 48006000 0 0 0 60483000 56653000 55696000 0 0 0 18833 1086 18241 350180;350181;350182;350183;350184;350185;350186;350187;350188;350189;350190;350191;350192;350193 213472;213473;213474;213475;213476;213477;213478;213479 213477 8 SNPLIER Unmodified 827.45012 0.45011648 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 15.867 16.598 2 0.14086 5813 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.426 29.499 25766000 7608700 7779800 8159300 535060 0 0 0 1683300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18834 326 18242 350194;350195;350196;350197;350198 213480;213481 213480 2 SNPNRPATEIYR Unmodified 1416.711 0.71097563 1091 P13482 treA Periplasmic trehalase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 12.597 13.429 2;3 1.607E-06 4026 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.79 125.35 715570000 115330000 131390000 122530000 0 0 0 72519000 58885000 43608000 0 0 0 30927000 29664000 27424000 0 0 0 25930000 25433000 31930000 0 0 0 18835 1091 18243 350199;350200;350201;350202;350203;350204;350205;350206;350207;350208;350209;350210;350211;350212;350213;350214;350215;350216;350217;350218;350219;350220;350221;350222 213482;213483;213484;213485;213486;213487;213488 213487 6 SNPQAELIK Unmodified 998.53966 0.53965977 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.796 17.554 2 0.0026179 6186 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.498 75.104 447480000 49420000 43476000 38217000 0 0 0 50457000 49453000 46989000 0 0 0 21518000 17781000 20301000 0 0 0 38759000 35717000 35390000 0 0 0 18836 328 18244 350223;350224;350225;350226;350227;350228;350229;350230;350231;350232;350233;350234 213489;213490;213491;213492;213493;213494;213495;213496;213497;213498 213495 10 SNPQAELIKDVYGIDDALR Unmodified 2116.08 0.08004782 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 48.225 46.944 3 0.095478 22650 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 37.112 32.008 38574000 0 8269100 4407200 0 0 0 0 0 4342700 0 0 0 0 0 3207500 0 0 0 6234800 6859400 5253500 0 0 0 18837 328 18245 350235;350236;350237;350238;350239;350240;350241 213499 213499 0 SNQEPATILLIDDHPMLR Unmodified 2062.0517 0.05172458 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 3 3 3 3 3 3 1 1 1 3 3 3 2 3 3 1 1 1 43.296 41.675 2;3;4 1.6033E-36 20687 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 294.48 294.48 3597800000 589800000 536280000 559900000 13518000 14485000 13010000 323460000 356350000 283890000 12719000 13226000 9871300 135080000 133730000 123640000 0 0 0 155990000 158720000 155070000 2591300 3770600 2731000 18838 908 18246 350242;350243;350244;350245;350246;350247;350248;350249;350250;350251;350252;350253;350254;350255;350256;350257;350258;350259;350260;350261;350262;350263;350264;350265;350266;350267;350268;350269;350270;350271;350272;350273;350274;350275;350276;350277;350278;350279;350280;350281;350282;350283;350284;350285;350286;350287;350288;350289;350290;350291 213500;213501;213502;213503;213504;213505;213506;213507;213508;213509;213510;213511;213512;213513;213514;213515;213516;213517;213518;213519;213520;213521;213522;213523;213524;213525;213526;213527;213528 213506 29 SNQFGDTR Unmodified 923.40971 0.40970823 861 P0AEH5 elaB Protein ElaB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.647 12.253 2 0.00053392 3299 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.9 123.08 5342500000 334880000 304140000 285370000 189690000 186510000 174180000 943130000 917840000 918000000 186200000 162190000 165600000 50586000 59392000 55651000 5320900 4631200 5040900 98772000 100990000 97398000 31807000 34921000 30295000 18839 861 18247 350292;350293;350294;350295;350296;350297;350298;350299;350300;350301;350302;350303;350304;350305;350306;350307;350308;350309;350310;350311;350312;350313;350314;350315 213529;213530;213531;213532;213533;213534;213535;213536;213537;213538;213539;213540;213541 213540 13 SNQFGDTR Acetyl (Protein N-term) 965.42027 0.42027292 861 P0AEH5 elaB Protein ElaB yes yes 1 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 18.378 18.968 2 0.0018264 5300 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 98.458 91.045 21144000 0 0 0 5561900 4798200 5813100 4970700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18840 861 18247 350316;350317;350318;350319 213542;213543;213544 213542 3 SNQMTGLFSTIDEK Unmodified 1569.7345 0.73447277 770 P0AD59 ivy Inhibitor of vertebrate lysozyme yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.791 38.287 2 1.8755E-05 15253 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 116.24 115.15 39184000 0 0 0 1820200 2025300 1984600 0 0 0 4856000 6651800 7799700 0 0 0 3841300 2906800 3398100 0 0 0 0 2516000 1384300 18841 770 18248 350320;350321;350322;350323;350324;350325;350326;350327;350328;350329;350330 213545;213546 213545 2 SNQNTCINQMPCVSLGEPVER Oxidation (M) 2448.0832 0.083177417 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 10 8 10 9 8 8 12 11 32.692 31.245 2;3 1.4611E-52 9949 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 262.42 262.42 970650000 0 0 0 0 0 0 0 0 0 124980000 87087000 83674000 0 0 0 172990000 119970000 107430000 0 0 0 82679000 102410000 89436000 18842 463 18249 350331;350332;350333;350334;350335;350336;350337;350338;350339;350340;350341;350342;350343;350344;350345;350346;350347;350348;350349;350350;350351;350352;350353;350354;350355;350356;350357;350358;350359;350360;350361;350362;350363;350364;350365;350366;350367;350368;350369;350370;350371;350372;350373;350374;350375;350376;350377;350378;350379;350380;350381;350382;350383;350384;350385;350386;350387;350388;350389;350390;350391;350392;350393;350394;350395;350396;350397;350398;350399;350400;350401;350402;350403;350404;350405;350406;350407;350408;350409;350410;350411;350412;350413;350414;350415 213547;213548;213549;213550;213551;213552;213553;213554;213555;213556;213557;213558;213559;213560;213561;213562;213563;213564;213565;213566;213567;213568;213569;213570;213571;213572;213573;213574;213575;213576;213577;213578;213579;213580;213581;213582;213583;213584;213585;213586;213587;213588;213589;213590;213591;213592;213593;213594;213595;213596;213597;213598;213599;213600;213601;213602;213603;213604;213605;213606;213607;213608;213609;213610;213611;213612;213613;213614 213548 277 66 SNQNTCINQMPCVSLGEPVER Unmodified 2432.0883 0.088262795 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 3 3 2 2 2 3 3 3 2 2 2 3 3 3 37.443 35.845 2;3;4 2.473E-53 14327 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 328.71 328.71 30718000000 142920000 130040000 128970000 13811000 12946000 15910000 141700000 139610000 119400000 2043200000 1890800000 1867300000 121620000 106100000 116760000 4613300000 6432300000 4965500000 133460000 149320000 128190000 2486800000 2321900000 2496200000 18843 463 18249 350416;350417;350418;350419;350420;350421;350422;350423;350424;350425;350426;350427;350428;350429;350430;350431;350432;350433;350434;350435;350436;350437;350438;350439;350440;350441;350442;350443;350444;350445;350446;350447;350448;350449;350450;350451;350452;350453;350454;350455;350456;350457;350458;350459;350460;350461;350462;350463;350464;350465;350466;350467;350468;350469;350470;350471;350472 213615;213616;213617;213618;213619;213620;213621;213622;213623;213624;213625;213626;213627;213628;213629;213630;213631;213632;213633;213634;213635;213636;213637;213638;213639;213640;213641;213642;213643;213644;213645;213646;213647;213648;213649;213650;213651;213652;213653;213654;213655;213656;213657;213658;213659;213660;213661;213662;213663;213664;213665;213666;213667;213668;213669;213670;213671 213628 57 SNSDFVPSTTR Unmodified 1209.5626 0.56258006 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.174 18.79 2 0.00011488 7039 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 117.01 107.23 160350000 14775000 15517000 13667000 0 0 0 13390000 14001000 15495000 0 0 0 10206000 14082000 9079900 0 0 0 12304000 12433000 15400000 0 0 0 18844 1966 18250 350473;350474;350475;350476;350477;350478;350479;350480;350481;350482;350483;350484 213672;213673;213674;213675;213676;213677;213678 213676 7 SNSETIK Unmodified 777.38685 0.38684752 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 2 1 1 1 7.284 8.1507 2 0.0072941 1615 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.906 66.908 1196600000 287960000 211920000 237420000 0 0 0 1619900 1750300 0 0 0 0 72528000 50598000 80339000 0 0 0 81351000 87304000 83819000 0 0 0 18845 1625 18251 350485;350486;350487;350488;350489;350490;350491;350492;350493;350494;350495;350496 213679;213680;213681;213682;213683;213684;213685;213686 213679 8 SNSPQEER Unmodified 945.41519 0.41518754 1855 P76402 yegP UPF0339 protein YegP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 5.761 6.5412 2 0.039653 1513 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 61.962 51.975 430310000 131960000 137130000 113250000 0 0 0 0 32892000 0 0 0 0 0 0 0 0 0 0 3960500 4846700 6268400 0 0 0 18846 1855 18252 350497;350498;350499;350500;350501;350502;350503 213687;213688;213689;213690 213690 3 SNSYDSSSIK Unmodified 1086.4829 0.48293275 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.16 12.774 2 0.00042364 2970 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 104.01 95.744 699960000 42495000 47995000 39566000 2924400 3141700 4808900 56898000 52223000 40450000 11141000 9949700 9065800 52827000 50071000 55310000 4595300 4188600 3804100 65416000 70391000 57345000 4587300 4671000 6095400 18847 883 18253 350504;350505;350506;350507;350508;350509;350510;350511;350512;350513;350514;350515;350516;350517;350518;350519;350520;350521;350522;350523;350524;350525;350526;350527 213691;213692;213693;213694;213695;213696;213697;213698;213699;213700;213701;213702;213703;213704;213705;213706;213707;213708;213709;213710 213693 20 SNTFVAELK Unmodified 1007.5288 0.52876073 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.68 24.592 2 0.0017337 11340 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 87.639 69.315 9941500000 1603500000 1564800000 1391400000 3239500 3810000 3447200 619770000 630810000 612870000 0 0 0 364460000 345240000 329120000 0 0 0 813150000 874520000 781300000 0 0 0 18848 1642 18254 350528;350529;350530;350531;350532;350533;350534;350535;350536;350537;350538;350539;350540;350541;350542 213711;213712;213713;213714;213715;213716;213717;213718;213719;213720;213721;213722;213723;213724;213725;213726 213712 15 SNTGLVIDPYFSGTK Unmodified 1597.7988 0.79878758 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.698 39.999 2 0.0028189 14070 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 64.224 60.692 11750000000 253120000 239900000 221510000 3674800 0 3191900 1469100000 1352500000 1301800000 0 0 0 1320100000 1108400000 1114800000 0 0 0 1161300000 1079400000 1121500000 0 0 0 18849 239 18255 350543;350544;350545;350546;350547;350548;350549;350550;350551;350552;350553;350554;350555;350556 213727 213727 1 SNTIVLK Unmodified 773.4647 0.46470391 822 P0ADZ0 rplW 50S ribosomal protein L23 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.735 16.283 2 0.0034343 4048 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 108 57.458 4428900000 419970000 391080000 372420000 40614000 35610000 34911000 245250000 239530000 230340000 72487000 61831000 50960000 257420000 235890000 215320000 50618000 40591000 38431000 466160000 404630000 385470000 48574000 46855000 43928000 18850 822 18256 350557;350558;350559;350560;350561;350562;350563;350564;350565;350566;350567;350568;350569;350570;350571;350572;350573;350574;350575;350576;350577;350578;350579;350580 213728;213729;213730;213731;213732;213733;213734;213735;213736;213737;213738;213739;213740;213741;213742;213743;213744;213745;213746;213747;213748;213749;213750 213742 23 SNTPIELK Unmodified 900.49165 0.49164694 1149 P18196 minC Septum site-determining protein MinC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.113 18.613 2 0.016536 6893 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.383 43.751 204780000 20318000 23368000 18368000 9348600 9115200 8070000 12840000 11911000 12129000 0 0 0 0 0 10897000 0 0 0 19252000 19651000 17686000 4505400 4495000 2825000 18851 1149 18257 350581;350582;350583;350584;350585;350586;350587;350588;350589;350590;350591;350592;350593;350594;350595;350596 213751;213752;213753;213754 213754 4 SNTPILVDGK Unmodified 1042.5659 0.56587452 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 20.288 20.429 2 0.0016261 8245 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 83.647 72.839 3073000000 0 0 408460000 0 0 0 743840000 725840000 811390000 1086300 0 0 0 0 382410000 0 0 0 0 0 0 0 0 0 18852 277 18258 350597;350598;350599;350600;350601;350602 213755;213756 213755 2 SNTPILVDGKDVMPEVNAVLEK Unmodified 2367.2356 0.23556218 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 46.618 44.961 3 1.431E-06 22301 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 93.407 86.214 145500000 0 18870000 16266000 1721600 2149400 0 28388000 23737000 26501000 2608100 0 1915700 0 0 9752300 0 0 0 0 0 13592000 0 0 0 18853 277 18259 350603;350604;350605;350606;350607;350608;350609;350610;350611;350612;350613 213757;213758;213759 213758 3 SNVPALEACPQK Unmodified 1312.6445 0.64453555 367 P0A7S3 rpsL 30S ribosomal protein S12 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.623 19.894 2 8.153E-05 7230 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 132.22 129.48 5849500000 914920000 812050000 701680000 4816400 5106300 5438900 280560000 285190000 267800000 13889000 9966100 12395000 337160000 312910000 334060000 9423700 5904800 6141700 494890000 502470000 504820000 8637200 8904300 10361000 18854 367 18260 350614;350615;350616;350617;350618;350619;350620;350621;350622;350623;350624;350625;350626;350627;350628;350629;350630;350631;350632;350633;350634;350635;350636;350637 213760;213761;213762;213763;213764;213765;213766;213767;213768;213769;213770;213771;213772;213773;213774;213775;213776;213777;213778;213779;213780;213781;213782;213783 213783 24 SNVPALEACPQKR Unmodified 1468.7456 0.74564657 367 P0A7S3 rpsL 30S ribosomal protein S12 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 15.007 15.549 2;3 2.2929E-12 5178 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 192.5 188.2 2347000000 181120000 232160000 173510000 34449000 31522000 32672000 57426000 53440000 71006000 92319000 87742000 105360000 81037000 67700000 76711000 105100000 90562000 73838000 154770000 144750000 132750000 94600000 89590000 82892000 18855 367 18261 350638;350639;350640;350641;350642;350643;350644;350645;350646;350647;350648;350649;350650;350651;350652;350653;350654;350655;350656;350657;350658;350659;350660;350661;350662;350663;350664;350665;350666;350667;350668;350669;350670;350671;350672;350673;350674;350675;350676;350677;350678;350679;350680;350681;350682;350683;350684;350685;350686 213784;213785;213786;213787;213788;213789;213790;213791;213792;213793;213794;213795;213796;213797;213798;213799;213800;213801;213802;213803;213804;213805;213806;213807;213808;213809;213810;213811;213812;213813;213814;213815;213816;213817;213818;213819;213820;213821;213822;213823;213824;213825;213826;213827;213828;213829;213830;213831 213809 48 SNVSMLGK Unmodified 834.42694 0.4269382 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.909 15.68 2 0.071898 5212 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.815 30.392 628100000 116760000 127390000 87183000 1257400 984400 0 72429000 77682000 61120000 0 0 0 0 0 0 0 0 0 39739000 0 43553000 0 0 0 18856 43 18262 350687;350688;350689;350690;350691;350692;350693;350694;350695;350696 213832 213832 0 SNWAVTGLYFYDSK Unmodified 1649.7726 0.77257283 1641 P61887 rmlA2 Glucose-1-phosphate thymidylyltransferase 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 49.13 47.769 2 6.9836E-06 22474 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 110.29 104.06 54212000 4790000 0 0 0 0 0 4205300 3723900 4196600 0 0 0 5904000 4783800 5181000 0 0 0 5609400 8784700 7033700 0 0 0 18857 1641 18263 350697;350698;350699;350700;350701;350702;350703;350704;350705;350706 213833 213833 1 SNWPYPR Unmodified 918.4348 0.43480077 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.114 22.384 2 0.014935 9176 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 82.263 78.409 745280000 17019000 18251000 13893000 0 0 0 45761000 53622000 55646000 0 0 0 57447000 51879000 55864000 0 0 0 122220000 135380000 118300000 0 0 0 18858 1065 18264 350707;350708;350709;350710;350711;350712;350713;350714;350715;350716;350717;350718 213834;213835 213834 2 SNYAVTGLYFYDNDVVQMAK Unmodified 2297.0674 0.067434223 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 51.426 50.172 2;3 1.2344E-18 24685 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 235.38 228.34 339440000 19764000 12960000 8130200 0 0 0 25410000 27208000 27203000 0 0 0 31425000 26038000 26276000 0 0 0 54395000 43207000 37423000 0 0 0 18859 1489 18265 350719;350720;350721;350722;350723;350724;350725;350726;350727;350728;350729;350730;350731;350732;350733;350734;350735;350736;350737;350738;350739;350740 213836;213837;213838;213839;213840;213841;213842;213843;213844;213845 213837 10 SNYPWFR Unmodified 968.45045 0.45045083 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.473 32.684 2 0.001881 12669 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 122.15 122.15 768110000 0 0 0 0 0 0 95568000 101390000 0 35491000 30760000 26701000 62453000 61312000 54459000 0 0 0 87970000 97462000 83551000 11492000 10431000 9068600 18860 30 18266 350741;350742;350743;350744;350745;350746;350747;350748;350749;350750;350751;350752;350753;350754 213846;213847;213848;213849;213850;213851;213852;213853;213854;213855 213846 10 SNYTVGK Unmodified 767.38137 0.38136821 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 11.102 11.849 2 0.15095 2939 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 56.122 46.372 1504900000 0 0 0 0 0 0 354060000 302610000 307330000 0 0 845150 216210000 171790000 0 0 0 0 152020000 0 0 0 0 0 18861 40 18267 350755;350756;350757;350758;350759;350760;350761 213856 213856 0 SPAFDSIMAETLK Unmodified 1408.6908 0.69081704 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 2 2 2 1 1 1 2 2 2 2 2 2 45.04 43.462 2;3 2.5169E-25 21019 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 248.09 241.15 23917000000 6318100000 6878800000 6052700000 1806300 0 0 617330000 618500000 572930000 2495100 2863800 2265700 438160000 409820000 372240000 0 0 0 531420000 560360000 536830000 0 0 0 18862 1217 18268 350762;350763;350764;350765;350766;350767;350768;350769;350770;350771;350772;350773;350774;350775;350776;350777;350778;350779;350780;350781;350782;350783;350784;350785;350786;350787;350788;350789;350790;350791;350792 213857;213858;213859;213860;213861;213862;213863;213864;213865;213866;213867;213868;213869;213870;213871;213872;213873;213874;213875;213876;213877;213878;213879;213880;213881;213882;213883;213884;213885;213886;213887;213888;213889 213874 29 SPAFDSIMAETLK Oxidation (M) 1424.6857 0.68573166 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 3 4 4 1 1 2 2 2 2 4 1 2 36.223 34.805 2 1.1706E-06 14882 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.01 129.63 429190000 83760000 98843000 102410000 0 0 358710 0 6175600 6089000 0 0 0 30912000 28183000 27385000 0 0 0 18629000 11192000 15254000 0 0 0 18863 1217 18268 350793;350794;350795;350796;350797;350798;350799;350800;350801;350802;350803;350804;350805;350806;350807;350808;350809;350810;350811;350812;350813;350814;350815;350816;350817;350818;350819;350820 213890;213891;213892;213893;213894;213895;213896;213897;213898;213899;213900 213898 511 11 SPAFTVPESAQR Unmodified 1288.6412 0.64116473 835 P0AE60 cedA Cell division activator CedA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.247 23.53 2 3.3697E-08 7188 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 194.06 185.53 613960000 12209000 12425000 9915500 0 0 0 7208800 3427100 0 0 0 0 5871300 4344900 4570200 241700000 142150000 144860000 10180000 7901200 7207100 0 0 0 18864 835 18269 350821;350822;350823;350824;350825;350826;350827;350828;350829;350830;350831;350832;350833;350834 213901;213902;213903;213904;213905;213906;213907;213908;213909;213910;213911;213912 213902 3 SPAGAIQFEAVDAPEIIPDPFDPSK Unmodified 2610.2853 0.28534915 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 54.964 53.484 2;3 3.3717E-73 26630 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 293.59 265.51 848970000 95616000 95469000 54389000 0 0 5064900 120180000 103560000 98291000 0 0 0 32725000 27156000 31707000 0 0 0 60471000 63853000 60491000 0 0 0 18865 1086 18270 350835;350836;350837;350838;350839;350840;350841;350842;350843;350844;350845;350846;350847;350848;350849;350850;350851;350852;350853;350854;350855;350856 213913;213914;213915;213916;213917;213918;213919 213913 6 SPAGAIQFEAVDAPEIIPDPFDPSKK Unmodified 2738.3803 0.38031217 1086 P13029 katG Catalase-peroxidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.304 51.867 3 1.1712E-15 25423 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146 139.97 937530000 94972000 98426000 98026000 1707100 0 1892400 100000000 110050000 104180000 1586500 2296300 4921500 46974000 55025000 54565000 0 0 0 57000000 50590000 55316000 0 0 0 18866 1086 18271 350857;350858;350859;350860;350861;350862;350863;350864;350865;350866;350867;350868;350869;350870;350871;350872;350873 213920;213921;213922;213923;213924;213925;213926;213927;213928;213929;213930;213931 213927 12 SPAIEEWLR Unmodified 1099.5662 0.56620887 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 1 1 1 1 1 1 1 39.43 37.657 2 4.5726E-08 18801 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 194.2 188.89 2034700000 456900000 491350000 419860000 0 0 0 135270000 135880000 144920000 714940 0 0 31624000 27171000 25395000 0 0 0 54411000 53396000 57757000 0 0 0 18867 703 18272 350874;350875;350876;350877;350878;350879;350880;350881;350882;350883;350884;350885;350886;350887;350888 213932;213933;213934;213935;213936;213937;213938;213939;213940;213941;213942;213943 213932 12 SPAISATK Unmodified 773.42832 0.42831841 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 11.098 11.963 2 0.00057683 3053 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 132.08 57.646 5328100000 724750000 660410000 702330000 0 12263000 7978200 448680000 400240000 432930000 0 0 0 403070000 0 384940000 0 0 0 396170000 386780000 367550000 0 0 0 18868 489 18273 350889;350890;350891;350892;350893;350894;350895;350896;350897;350898;350899;350900;350901;350902 213944;213945;213946;213947;213948;213949;213950;213951;213952 213948 9 SPDKIYPGQVLR Unmodified 1371.751 0.75104953 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 22.548 22.017 2;3 1.7446E-05 7418 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 111.5 103.59 1115900000 0 0 0 227190000 270300000 262690000 0 0 0 109020000 102160000 100460000 0 0 0 2633600 0 854180 0 0 0 17317000 12754000 10529000 18869 783 18274 350903;350904;350905;350906;350907;350908;350909;350910;350911;350912;350913;350914;350915;350916;350917;350918;350919;350920;350921;350922 213953;213954;213955;213956;213957;213958;213959;213960;213961 213957 4 SPDQYGDNCEVCGATYSPTELIEPK Unmodified 2829.2109 0.21093993 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.285 40.587 2;3 1.3191E-71 20175 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 360.94 347.43 559870000 44527000 41498000 38018000 0 0 0 46277000 46135000 40843000 0 0 0 45197000 46964000 41609000 0 0 0 54859000 57640000 56303000 0 0 0 18870 60 18275 350923;350924;350925;350926;350927;350928;350929;350930;350931;350932;350933;350934;350935;350936;350937;350938;350939;350940;350941;350942;350943;350944;350945;350946 213962;213963;213964;213965;213966;213967;213968;213969;213970;213971;213972;213973;213974;213975;213976;213977;213978;213979 213963 17 SPEEIAVLR Unmodified 1012.5553 0.55530983 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 27.053 25.899 2 3.2999E-11 11559 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 209.37 187.6 2175200000 246560000 231900000 189060000 0 0 367890 177440000 169590000 163840000 15240000 13021000 12750000 98168000 94370000 105940000 67841000 43345000 43886000 140740000 139620000 143580000 31964000 24851000 21109000 18871 1100 18276 350947;350948;350949;350950;350951;350952;350953;350954;350955;350956;350957;350958;350959;350960;350961;350962;350963;350964;350965;350966;350967;350968;350969;350970 213980;213981;213982;213983;213984;213985;213986;213987;213988;213989;213990 213986 11 SPEEITLLAVSK Unmodified 1285.7129 0.71293269 1709 P67080 yggS UPF0001 protein YggS yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.579 36.881 2 0.0001179 17126 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 100.72 95.181 272470000 10118000 7829200 0 0 132370 0 26166000 30096000 30526000 0 0 0 22803000 20992000 19472000 0 0 0 40088000 36232000 28011000 0 0 0 18872 1709 18277 350971;350972;350973;350974;350975;350976;350977;350978;350979;350980;350981;350982 213991;213992;213993;213994;213995;213996 213996 2 SPEVFNLIMK Unmodified 1176.6213 0.62128091 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 45.604 44.175 2 0.00012656 21356 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.82 144.83 1819000000 660110000 592300000 563510000 1311000 766480 991580 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18873 1762 18278 350983;350984;350985;350986;350987;350988 213997;213998;213999 213999 3 SPFIHQQFAQQLNIEHPYGR Unmodified 2409.1978 0.19781197 1114 P15770 aroE Shikimate dehydrogenase (NADP(+)) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.672 31.299 4 5.7362E-05 14694 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 77.554 74.092 385390000 39584000 34915000 38408000 0 0 0 20577000 21280000 22730000 0 0 0 30321000 22971000 20678000 0 0 0 41915000 49431000 42583000 0 0 0 18874 1114 18279 350989;350990;350991;350992;350993;350994;350995;350996;350997;350998;350999;351000 214000;214001;214002;214003;214004;214005;214006;214007;214008;214009;214010 214004 11 SPFVTSGIR Unmodified 962.51853 0.5185304 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.938 22.349 2 1.0639E-07 8985 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 182.39 162.75 13329000000 1992400000 1954900000 1957000000 4844400 0 0 912020000 839260000 797600000 0 0 0 745920000 637430000 661380000 0 0 0 908750000 996540000 920620000 0 0 0 18875 391 18280 351001;351002;351003;351004;351005;351006;351007;351008;351009;351010;351011;351012;351013 214011;214012;214013;214014;214015;214016;214017;214018;214019;214020;214021;214022;214023;214024;214025;214026 214026 16 SPGAEWIAFCK Unmodified 1264.591 0.59104341 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 38.631 36.723 2 1.9536E-07 14313 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 166.33 162.31 45473000 0 0 0 7334400 6006300 5708200 0 3390000 0 0 0 0 0 0 0 0 0 0 0 0 0 7844900 7440600 7748600 18876 1933 18281 351014;351015;351016;351017;351018;351019;351020 214027;214028;214029;214030 214027 4 SPGGEITPEGLMAVGR Unmodified 1569.7821 0.78209166 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 40.339 38.637 2 1.5163E-30 18113 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 228.83 202.05 249700000 11815000 12074000 9439100 0 0 0 16074000 12990000 16109000 0 0 0 26852000 25970000 24997000 0 0 0 28372000 31019000 32264000 1723000 0 0 18877 180 18282 351021;351022;351023;351024;351025;351026;351027;351028;351029;351030;351031;351032;351033 214031;214032;214033;214034;214035;214036;214037;214038;214039 214037 9 SPGTLSDWLQK Unmodified 1230.6245 0.62445203 110 P05458 ptrA Protease 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.847 36.173 2 0.00059717 17357 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 102.55 96.988 180600000 17068000 16261000 13723000 0 0 0 13577000 13967000 16222000 0 0 0 11121000 12017000 12335000 0 0 0 14858000 22377000 17072000 0 0 0 18878 110 18283 351034;351035;351036;351037;351038;351039;351040;351041;351042;351043;351044;351045 214040;214041;214042 214042 0 SPGVFFDSDK Unmodified 1097.5029 0.50293991 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 3 2 1 1 1 2 1 1 29.477 28.28 2 3.2922E-05 12901 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143.7 138.97 11850000000 287830000 264320000 275420000 3178900 3435600 3464500 189790000 184010000 190240000 604490000 639960000 574590000 209140000 226960000 208900000 1769400000 1417100000 1493900000 305860000 316020000 276640000 833550000 796410000 774880000 18879 463 18284 351046;351047;351048;351049;351050;351051;351052;351053;351054;351055;351056;351057;351058;351059;351060;351061;351062;351063;351064;351065;351066;351067;351068;351069;351070;351071;351072;351073;351074;351075 214043;214044;214045;214046;214047;214048;214049;214050;214051;214052;214053;214054;214055;214056;214057;214058;214059;214060;214061;214062;214063;214064;214065 214055 20 SPGVFFDSDKGK Unmodified 1282.6194 0.61936665 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 1 5 6 4 2 1 2 6 9 8 1 2 2 6 6 5 20.785 20.752 1;2;3 2.8626E-49 5774 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 301.09 296.56 37784000000 18797000 32118000 23726000 20252000 20613000 20634000 24026000 24989000 9536200 2598400000 1816200000 1723000000 22673000 15872000 20029000 8317500000 6617100000 7134000000 8565300 27705000 27981000 3193800000 2890500000 3176000000 18880 463 18285 351076;351077;351078;351079;351080;351081;351082;351083;351084;351085;351086;351087;351088;351089;351090;351091;351092;351093;351094;351095;351096;351097;351098;351099;351100;351101;351102;351103;351104;351105;351106;351107;351108;351109;351110;351111;351112;351113;351114;351115;351116;351117;351118;351119;351120;351121;351122;351123;351124;351125;351126;351127;351128;351129;351130;351131;351132;351133;351134;351135;351136;351137;351138;351139;351140;351141;351142;351143;351144;351145;351146;351147;351148;351149;351150;351151;351152;351153;351154;351155;351156 214066;214067;214068;214069;214070;214071;214072;214073;214074;214075;214076;214077;214078;214079;214080;214081;214082;214083;214084;214085;214086;214087;214088;214089;214090;214091;214092;214093;214094;214095;214096;214097;214098;214099;214100;214101;214102;214103;214104;214105;214106;214107;214108;214109;214110;214111;214112;214113;214114;214115;214116;214117;214118;214119;214120;214121;214122;214123;214124;214125;214126;214127;214128;214129;214130 214080 62 SPHVAALGSEAGGTLYGLQVLER Unmodified 2324.2125 0.21245898 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 2 1 1 1 43.561 42.069 2;3 9.1106E-44 20386 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 302.4 302.4 1006400000 271930000 221020000 202190000 5064800 3757000 2483300 29088000 19130000 21996000 0 0 0 38176000 32462000 37671000 0 0 0 45224000 35309000 40888000 0 0 0 18881 529 18286 351157;351158;351159;351160;351161;351162;351163;351164;351165;351166;351167;351168;351169;351170;351171;351172;351173;351174;351175 214131;214132;214133;214134;214135;214136;214137;214138;214139;214140;214141;214142;214143;214144;214145;214146;214147 214144 17 SPHYIVMNDK Unmodified 1202.5754 0.57539335 1660 P63235 gadC Probable glutamate/gamma-aminobutyrate antiporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 15.033 15.707 2;3 3.466E-09 5357 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.19 214.92 1245500000 60592000 69009000 56834000 16187000 14324000 17332000 236030000 259520000 241640000 84401000 72434000 78061000 2447200 6224400 0 0 0 0 11091000 10080000 9276600 0 0 0 18882 1660 18287 351176;351177;351178;351179;351180;351181;351182;351183;351184;351185;351186;351187;351188;351189;351190;351191;351192;351193;351194;351195;351196;351197;351198;351199;351200;351201;351202;351203;351204;351205;351206;351207;351208 214148;214149;214150;214151;214152;214153;214154;214155;214156;214157;214158;214159;214160;214161;214162;214163;214164;214165;214166;214167;214168;214169;214170;214171 214155 24 SPHYIVMNDKKH Unmodified 1467.7293 0.72926823 1660 P63235 gadC Probable glutamate/gamma-aminobutyrate antiporter yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 2 2 11.229 11.897 3;4 4.5112E-05 2611 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 101.35 98.727 137630000 0 0 0 10385000 12172000 8262300 0 0 0 24788000 49410000 32618000 0 0 0 0 0 0 0 0 0 0 0 0 18883 1660 18288 351209;351210;351211;351212;351213;351214;351215;351216;351217;351218;351219 214172;214173;214174 214172 3 SPIAGMPVLEVWK Unmodified 1425.769 0.76900778 633 P0AB67 pntB NAD(P) transhydrogenase subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.531 50.221 2 9.4227E-07 20436 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 136.48 129.35 776810000 24881000 22757000 22840000 4106900 4800500 3769200 93868000 80227000 86793000 19769000 18243000 19321000 56616000 52624000 60708000 0 0 0 71434000 56242000 52995000 8855100 8647400 7315700 18884 633 18289 351220;351221;351222;351223;351224;351225;351226;351227;351228;351229;351230;351231;351232;351233;351234;351235;351236;351237;351238;351239;351240 214175;214176;214177;214178;214179;214180;214181;214182;214183;214184;214185;214186;214187;214188;214189;214190;214191 214175 15 SPIGELINNK Unmodified 1083.5924 0.59242362 1515 P39199 prmB 50S ribosomal protein L3 glutamine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.045 27.549 2 6.0997E-09 12172 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 190.73 183.78 999420000 102160000 90573000 75036000 4675300 4946500 5072600 61011000 58836000 65934000 6974600 6304700 7360600 70602000 79430000 74120000 0 0 0 83599000 93317000 92319000 5903200 5223800 6019700 18885 1515 18290 351241;351242;351243;351244;351245;351246;351247;351248;351249;351250;351251;351252;351253;351254;351255;351256;351257;351258;351259;351260;351261 214192;214193;214194;214195;214196;214197;214198;214199;214200;214201;214202;214203;214204;214205;214206;214207;214208;214209;214210;214211;214212 214211 21 SPILLYSDFK Unmodified 1181.6332 0.6332258 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.616 39.928 2 1.4819E-06 19874 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 164.46 154.38 1110300000 227750000 218510000 185170000 0 1382700 1130900 70346000 57790000 63102000 0 0 0 44515000 38540000 46137000 0 0 0 46776000 48727000 60437000 0 0 0 18886 218 18291 351262;351263;351264;351265;351266;351267;351268;351269;351270;351271;351272;351273;351274;351275 214213;214214;214215;214216;214217;214218;214219;214220;214221;214222;214223;214224 214214 12 SPLEHLWQLK Unmodified 1249.6819 0.68190733 1848 P76291 cmoB tRNA (mo5U34)-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.356 34.799 3 0.04916 16644 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 40.589 32.076 71389000 4048600 5806800 3278700 0 0 0 5247600 8257300 4821200 0 0 0 7837800 2985900 4847600 0 0 0 8350000 9723400 6184100 0 0 0 18887 1848 18292 351276;351277;351278;351279;351280;351281;351282;351283;351284;351285;351286;351287 214225;214226 214226 2 SPLIPGDPIVWR Unmodified 1348.7503 0.75032125 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.374 47.003 2 2.7403E-05 22791 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143.03 141.42 1473400000 0 0 0 0 0 806480 121650000 109450000 110840000 0 0 0 109690000 104430000 81561000 0 0 0 277520000 300630000 254000000 0 1658000 1109800 18888 1124 18293 351288;351289;351290;351291;351292;351293;351294;351295;351296;351297;351298;351299 214227;214228;214229;214230;214231;214232;214233;214234;214235 214231 9 SPLLTPEK Unmodified 883.50148 0.50148335 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.869 18.341 2 0.00035513 6705 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.89 103.31 5201200000 594050000 656900000 618000000 9034300 8278700 8867800 337440000 331500000 326770000 5284300 3094100 2300100 270420000 235930000 210950000 0 0 1853600 567410000 490600000 509450000 4101700 4386300 4552400 18889 1444 18294 351300;351301;351302;351303;351304;351305;351306;351307;351308;351309;351310;351311;351312;351313;351314;351315;351316;351317;351318;351319;351320;351321 214236;214237;214238;214239;214240;214241;214242;214243;214244;214245;214246;214247;214248;214249;214250 214245 15 SPLMVAVSSGGTSPVLAR Unmodified 1727.924 0.92400487 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.508 37.834 2 5.6202E-17 17557 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 160.18 121.38 125240000 15470000 11584000 12134000 0 0 0 10194000 9138100 9098100 0 0 0 8046600 7940600 6656500 0 0 0 11193000 12087000 11703000 0 0 0 18890 843 18295 351322;351323;351324;351325;351326;351327;351328;351329;351330;351331;351332;351333 214251;214252;214253;214254 214254 3 SPLSAIR Unmodified 742.43374 0.43373813 1225 P23883 puuC Aldehyde dehydrogenase PuuC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 18.036 18.638 2 0.0051746 6977 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.74 28.793 70519000 19055000 22628000 18504000 754120 872270 698790 0 2553200 2890500 0 0 0 0 0 0 0 0 0 0 2563400 0 0 0 0 18891 1225 18296 351334;351335;351336;351337;351338;351339;351340;351341;351342 214255;214256;214257 214255 3 SPLVAESIR Unmodified 970.54475 0.54474515 864 P0AEI6 nudJ Phosphatase NudJ yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.785 21.78 2 0.024628 9329 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 61.602 43.199 367370000 32496000 30928000 28492000 0 0 423790 62618000 62997000 53505000 0 0 0 23492000 20513000 24908000 0 0 0 0 0 26110000 0 891450 0 18892 864 18297 351343;351344;351345;351346;351347;351348;351349;351350;351351;351352;351353;351354 214258;214259;214260 214258 3 SPMLVDYVQR Unmodified 1206.6067 0.60669348 203 P09148 galT Galactose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.179 31.74 2 0.00017953 14999 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.16 113.45 150690000 22407000 17965000 16568000 0 0 0 15867000 15002000 15230000 0 0 0 6646800 7470100 6021000 0 0 0 9629800 9886100 7999600 0 0 0 18893 203 18298 351355;351356;351357;351358;351359;351360;351361;351362;351363;351364;351365;351366 214261;214262;214263;214264;214265;214266 214265 6 SPMVGTFYR Unmodified 1056.5063 0.50625115 652 P0ABD8 accB Biotin carboxyl carrier protein of acetyl-CoA carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.455 26.283 2 9.4327E-07 12258 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 179.21 164.67 6485800000 331260000 352470000 336310000 0 0 2752900 501710000 509310000 503210000 9656200 13257000 11221000 508000000 566830000 548120000 11284000 8237700 8272600 722720000 772760000 719230000 15180000 16771000 17282000 18894 652 18299 351367;351368;351369;351370;351371;351372;351373;351374;351375;351376;351377;351378;351379;351380;351381;351382;351383;351384;351385;351386;351387;351388 214267;214268;214269;214270;214271;214272;214273;214274;214275;214276;214277;214278;214279;214280;214281;214282;214283;214284;214285;214286;214287;214288 214274 22 SPMVGTFYR Oxidation (M) 1072.5012 0.50116577 652 P0ABD8 accB Biotin carboxyl carrier protein of acetyl-CoA carboxylase yes yes 0 1 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 3 3 3 2 2 3 24.194 23.476 2 0.00056463 9570 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.12 104.35 194720000 2660300 5995900 8979000 0 0 0 0 17669000 16356000 508350 0 0 20621000 19240000 20478000 0 0 0 25586000 23802000 32826000 0 0 0 18895 652 18299 351389;351390;351391;351392;351393;351394;351395;351396;351397;351398;351399;351400;351401;351402;351403;351404;351405;351406;351407;351408;351409;351410;351411;351412;351413 214289;214290;214291;214292;214293;214294;214295;214296;214297 214292 357 6 SPMYAGVIEGVGPR Unmodified 1431.718 0.71803484 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.321 34.764 2 4.8891E-08 16790 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.33 171.68 364380000 29372000 31723000 29192000 0 0 0 30119000 27164000 32406000 0 0 0 24204000 22611000 19520000 0 0 0 44248000 38037000 35786000 0 0 0 18896 280 18300 351414;351415;351416;351417;351418;351419;351420;351421;351422;351423;351424;351425 214298;214299;214300;214301;214302;214303;214304;214305;214306 214301 9 SPNAAEEHLK Unmodified 1094.5356 0.53563702 330 P0A7C2 lexA LexA repressor yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.898 11.768 2 0.0062499 2970 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 72.325 66.544 78337000 10339000 11234000 11267000 1732600 2932200 1879700 3857000 4791300 6341600 0 0 0 3046400 3484200 3000600 0 0 0 5165000 4277400 4989600 0 0 0 18897 330 18301 351426;351427;351428;351429;351430;351431;351432;351433;351434;351435;351436;351437;351438;351439;351440 214307 214307 0 SPNIFFADVMDEEDAFFDK Unmodified 2235.9671 0.96705148 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 55.548 54.053 2 9.89E-14 26973 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.52 177.62 453770000 155480000 124980000 128650000 0 0 0 18428000 23785000 0 0 0 0 0 0 0 0 0 0 0 2441200 0 0 0 0 18898 1486 18302 351441;351442;351443;351444;351445;351446 214308;214309 214308 2 SPNILLIPGTSSVAHLR Unmodified 1774.0101 0.010117761 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.319 38.645 3 5.489E-05 18711 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 63.374 63.374 407550000 84532000 70067000 71008000 0 862980 585630 24707000 26169000 29551000 0 0 0 11831000 14851000 12099000 0 0 0 21673000 22922000 16688000 0 0 0 18899 1278 18303 351447;351448;351449;351450;351451;351452;351453;351454;351455;351456;351457;351458;351459;351460 214310;214311;214312;214313;214314;214315;214316;214317 214313 0 SPQAQQHLQQLLR Unmodified 1545.8376 0.83757312 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 22.11 21.988 2 3.7578E-07 9468 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 149.33 138.81 78701000 7560800 9320000 8059300 0 0 0 7464400 10786000 8914400 0 0 0 3623400 4182200 3400200 0 0 0 6393300 0 8996300 0 0 0 18900 1926 18304 351461;351462;351463;351464;351465;351466;351467;351468;351469;351470;351471 214318 214318 1 SPQEMIDEAVQTAK Unmodified 1545.7345 0.73447277 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.664 35.039 2 2.6521E-08 16181 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 150.51 149.1 245880000 18682000 18419000 23023000 0 0 0 15538000 16486000 18153000 0 0 0 20068000 20717000 18289000 0 0 0 24317000 26509000 25677000 0 0 0 18901 1421 18305 351472;351473;351474;351475;351476;351477;351478;351479;351480;351481;351482;351483 214319;214320;214321;214322;214323;214324;214325;214326;214327;214328;214329;214330;214331 214331 10 SPQPLMSPAWSPDGSK Unmodified 1683.7927 0.79265635 398 P0A855 tolB Protein TolB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.061 34.283 2 2.3809E-13 13497 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 160.38 160.38 447960000 39763000 49828000 39883000 6671700 5523800 6363100 21326000 24000000 19917000 10225000 9610400 8682700 25826000 20463000 20970000 0 0 0 34760000 35477000 37916000 10636000 10052000 10069000 18902 398 18306 351484;351485;351486;351487;351488;351489;351490;351491;351492;351493;351494;351495;351496;351497;351498;351499;351500;351501;351502;351503;351504;351505 214332;214333;214334;214335;214336;214337;214338;214339;214340;214341;214342;214343;214344;214345;214346;214347;214348;214349;214350 214335 19 SPSFGEYYSHPR Unmodified 1425.6313 0.63132832 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.514 19.995 3 1.3579E-05 7907 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 115.29 112.2 731070000 121380000 140100000 135290000 0 0 0 70099000 66088000 69864000 0 0 0 14942000 16628000 13919000 0 0 0 28477000 27374000 26907000 0 0 0 18903 1174 18307 351506;351507;351508;351509;351510;351511;351512;351513;351514;351515;351516;351517 214351;214352;214353;214354 214351 2 SPSGVALECK Unmodified 1046.5066 0.50664508 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 14.445 15.167 2 8.8907E-05 4960 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 131.5 119.15 6188800000 60200000 61189000 67127000 777390 909390 569180 1075000000 1109000000 1030200000 2352200 1595100 1105400 515940000 477130000 467840000 0 0 0 466740000 403030000 448120000 0 0 0 18904 654 18308 351518;351519;351520;351521;351522;351523;351524;351525;351526;351527;351528;351529;351530;351531;351532;351533;351534;351535;351536;351537;351538;351539 214355;214356;214357;214358;214359;214360;214361 214358 7 SPSLFVNAATWGLLFTGK Unmodified 1908.0145 0.014534437 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 2 1 2 2 2 1 1 1 1 1 1 1 2 2 2 2 2 55.535 54.239 2;3 1.0831E-36 21767 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 289.65 278.12 328100000 4618400 3291400 0 10718000 18104000 13647000 5362200 0 0 21824000 25899000 20544000 2644700 2583800 2121900 6569400 4719600 6929600 11260000 13872000 10745000 49177000 44596000 48871000 18905 215 18309 351540;351541;351542;351543;351544;351545;351546;351547;351548;351549;351550;351551;351552;351553;351554;351555;351556;351557;351558;351559;351560;351561;351562;351563;351564;351565;351566;351567;351568;351569;351570 214362;214363;214364;214365;214366;214367;214368;214369;214370;214371 214365 10 SPTFYGK Unmodified 798.3912 0.39120462 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.362 15.846 2 0.013597 5244 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.614 53.544 612670000 0 0 0 0 0 583220 53010000 44656000 51082000 14412000 10913000 12428000 73070000 65499000 60138000 3960700 3716600 3732400 72101000 51484000 66029000 8703500 9888200 7262300 18906 723 18310 351571;351572;351573;351574;351575;351576;351577;351578;351579;351580;351581;351582;351583;351584;351585;351586;351587;351588;351589 214372;214373;214374;214375;214376;214377;214378;214379;214380;214381;214382;214383;214384 214380 13 SPTYWNNAK Unmodified 1079.5036 0.50360861 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 3 3 1 1 1 1 1 1 1 1 1 1 1 1 16.635 17.405 2 1.5514E-05 6110 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.2 145.74 7122400000 2174900000 1922000000 1732500000 1998300 4580600 5778900 206110000 173820000 160870000 0 0 0 120270000 108490000 87759000 0 0 0 131930000 152160000 139220000 0 0 0 18907 1217 18311 351590;351591;351592;351593;351594;351595;351596;351597;351598;351599;351600;351601;351602;351603;351604;351605;351606;351607;351608;351609 214385;214386;214387;214388;214389;214390;214391;214392;214393;214394;214395;214396;214397;214398;214399 214388 14 SPVEPVQSTAPQPK Unmodified 1463.762 0.76200815 1730 P69411 rcsF Outer membrane lipoprotein RcsF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.142 16.946 2 1.3282E-11 5827 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 177.57 166.42 128880000 12585000 11459000 11989000 2096900 2159800 2267100 9221300 8441700 8901100 0 0 2807100 7517900 7994200 6641200 0 0 0 12341000 11123000 11336000 0 0 0 18908 1730 18312 351610;351611;351612;351613;351614;351615;351616;351617;351618;351619;351620;351621;351622;351623;351624;351625;351626 214400;214401;214402;214403;214404;214405;214406;214407;214408;214409;214410;214411;214412;214413;214414;214415 214412 16 SPVGASGLMQIMPGTATHTVK Unmodified 2082.0602 0.060180776 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By matching 1 1 35.722 34.348 3 0.003325 16403 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 52.464 52.464 47935000 0 0 34154000 0 0 0 0 0 0 0 0 0 0 0 13781000 0 0 0 0 0 0 0 0 0 18909 1006 18313 351627;351628 214416 214416 1 SPVLLALDYNPTGDK Unmodified 1601.8301 0.83008771 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.445 44.005 2;3 3.439E-27 21265 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 238.92 238.22 1876600000 168340000 134450000 133470000 0 0 0 177570000 165770000 155750000 0 0 0 172100000 160360000 150830000 0 0 0 155120000 150860000 151950000 0 0 0 18910 1456 18314 351629;351630;351631;351632;351633;351634;351635;351636;351637;351638;351639;351640;351641;351642;351643;351644;351645;351646;351647;351648;351649;351650;351651;351652 214417;214418;214419;214420;214421;214422;214423;214424;214425;214426;214427;214428;214429;214430;214431;214432;214433;214434;214435;214436;214437;214438;214439;214440 214427 24 SPVLLALDYNPTGDKEAPVYACLVGK Unmodified 2789.431 0.43096753 1456 P37095 pepB Peptidase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 1 1 2 2 50.89 49.609 3;4 9.7763E-16 23969 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 148.28 136.31 982090000 100910000 92435000 91197000 1567900 1569200 1015200 88977000 88812000 77484000 0 0 0 19652000 127970000 19651000 0 0 0 21734000 125970000 123150000 0 0 0 18911 1456 18315 351653;351654;351655;351656;351657;351658;351659;351660;351661;351662;351663;351664;351665;351666;351667;351668;351669;351670;351671;351672;351673;351674;351675;351676 214441;214442;214443;214444;214445;214446;214447;214448;214449;214450;214451;214452 214445 12 SPVNDHPFCLFNPQEDAQILEK Unmodified 2597.222 0.22203738 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 1 47.808 46.35 2;3 5.4203E-43 22714 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 228.46 222.02 1610900000 314390000 366810000 313270000 0 0 0 146080000 159070000 132800000 0 0 0 33753000 33542000 26178000 0 0 0 32061000 29390000 23531000 0 0 0 18912 757 18316 351677;351678;351679;351680;351681;351682;351683;351684;351685;351686;351687;351688;351689;351690;351691;351692;351693;351694 214453;214454;214455;214456;214457;214458;214459;214460;214461;214462;214463;214464;214465;214466;214467;214468 214463 16 SPVNHNVDHEEIAK Unmodified 1587.7641 0.76413341 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 11.227 12.005 2;3 1.077E-26 3081 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 240.37 236.48 1016800000 95633000 102540000 83419000 4735400 4397600 6221100 80823000 80722000 77692000 5287900 6418200 6719500 71449000 61693000 71323000 0 0 0 90044000 77024000 81408000 0 3803700 5487800 18913 1146 18317 351695;351696;351697;351698;351699;351700;351701;351702;351703;351704;351705;351706;351707;351708;351709;351710;351711;351712;351713;351714;351715;351716;351717;351718;351719;351720;351721;351722;351723;351724;351725;351726;351727;351728 214469;214470;214471;214472;214473;214474 214472 6 SPVNHNVDHEEIAKFEAVASR Unmodified 2348.1509 0.15092135 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 23.791 22.907 4 0.14341 7374 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 21.616 18.93 8051700 0 0 0 3538000 1984000 2529600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18914 1146 18318 351729;351730;351731 214475 214475 1 SPVSIGGVVVGR Unmodified 1125.6506 0.6506072 1695 P64604 mlaD Probable phospholipid ABC transporter-binding protein MlaD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 2 1 1 1 32.728 31.299 2 0.00023347 14951 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.806 69.367 176510000 0 0 0 3556400 3100500 3340900 0 0 0 23338000 22145000 23848000 0 9308500 0 769160 669450 625210 14255000 12250000 3403500 22247000 21863000 11790000 18915 1695 18319 351732;351733;351734;351735;351736;351737;351738;351739;351740;351741;351742;351743;351744;351745;351746;351747;351748;351749;351750;351751;351752;351753;351754;351755 214476;214477;214478;214479;214480;214481;214482;214483;214484 214480 8 SPVTLEYDLDDAGR Unmodified 1549.726 0.72601657 389 P0A821 selA L-seryl-tRNA(Sec) selenium transferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 36.869 35.261 2 2.9729E-20 16948 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 222.74 215.1 147910000 21008000 18103000 14656000 0 0 0 9285600 0 12530000 0 0 0 16414000 12490000 14175000 0 0 0 0 15683000 13566000 0 0 0 18916 389 18320 351756;351757;351758;351759;351760;351761;351762;351763;351764;351765;351766 214485;214486;214487;214488;214489 214489 5 SPVVDISFPEIEKFDR Unmodified 1876.9571 0.95707914 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 47.22 45.801 3 0.028608 16432 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 27.526 25.876 6097100 0 0 0 2456600 1992400 1648100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18917 862 18321 351767;351768;351769 214490;214491 214491 2 SPWQLSSQSNR Unmodified 1288.616 0.61601261 1767 P75745 ybgK Uncharacterized protein YbgK yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.26 21.978 2 4.3067E-10 9049 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.67 178.14 165100000 25371000 19084000 22126000 0 0 0 19995000 15137000 12051000 0 0 0 7413500 8065400 5498900 0 0 0 10355000 10846000 9152300 0 0 0 18918 1767 18322 351770;351771;351772;351773;351774;351775;351776;351777;351778;351779;351780;351781 214492;214493;214494;214495;214496;214497;214498;214499;214500;214501 214498 10 SQAALTQLHEASVTLIWR Unmodified 2023.0851 0.085073618 1851 P76329 yedP Putative mannosyl-3-phosphoglycerate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 43.46 41.821 3 6.4857E-05 20211 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 76.768 73.715 102740000 23538000 27918000 20414000 394470 0 0 11084000 10110000 9282200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18919 1851 18323 351782;351783;351784;351785;351786;351787;351788 214502;214503;214504;214505 214505 0 SQADVDTAHR Unmodified 1098.5054 0.50539953 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 3 1 1 1 1 7.1435 7.9961 2;3 3.9266E-05 1204 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 140.84 140.84 168490000 21254000 32713000 43780000 0 0 0 16851000 13480000 16286000 0 0 0 4161500 4869500 2925700 0 0 0 3247800 4540100 4381400 0 0 0 18920 748 18324 351789;351790;351791;351792;351793;351794;351795;351796;351797;351798;351799;351800;351801;351802;351803;351804;351805;351806 214506;214507;214508;214509;214510;214511;214512;214513;214514;214515;214516;214517;214518 214506 11 SQAIEGLVK Unmodified 943.53385 0.53384611 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 2 1 2 1 1 1 21.373 21.481 2 0.032251 6414 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 59.35 47.581 10795000000 703350000 763370000 743020000 20032000 22579000 20753000 944170000 802550000 928230000 39467000 22128000 27697000 812310000 810730000 794510000 0 0 0 1149300000 1141600000 969570000 26722000 25956000 26891000 18921 396 18325 351807;351808;351809;351810;351811;351812;351813;351814;351815;351816;351817;351818;351819;351820;351821;351822;351823;351824;351825;351826;351827;351828;351829;351830;351831;351832 214519;214520;214521;214522;214523;214524;214525;214526;214527;214528;214529;214530;214531;214532 214525 14 SQCPCIIFDSSR Unmodified 1468.6439 0.64388362 892 P0AEW9 fruK 1-phosphofructokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.371 29.842 2 6.2561E-05 13468 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 104.43 102.49 323020000 27370000 22050000 26926000 0 0 0 19282000 16872000 17661000 0 3421000 2509000 25306000 28041000 23254000 0 0 0 38170000 34676000 34563000 1204600 1717000 0 18922 892 18326 351833;351834;351835;351836;351837;351838;351839;351840;351841;351842;351843;351844;351845;351846;351847;351848 214533;214534;214535;214536;214537;214538;214539;214540;214541;214542;214543;214544 214542 6 SQDDVQK Unmodified 818.37701 0.37701112 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 4.6877 5.6022 2 0.0015024 1029 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.86 105.93 1690100000 0 0 0 0 1428500 0 113640000 114370000 114600000 0 0 0 212740000 190170000 214700000 0 0 0 259070000 242680000 226750000 0 0 0 18923 385 18327 351849;351850;351851;351852;351853;351854;351855;351856;351857;351858 214545;214546;214547;214548;214549;214550;214551;214552 214550 8 SQDLASQAEESFVEAE Unmodified 1738.7534 0.75335353 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.878 46.553 2 8.3702E-31 22429 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 237.68 236.69 1140700000 141230000 147550000 112280000 0 0 0 45016000 42362000 42776000 29541000 34833000 29029000 73727000 51892000 61755000 16442000 12959000 10483000 86507000 81950000 80973000 20704000 18654000 0 18924 373 18328 351859;351860;351861;351862;351863;351864;351865;351866;351867;351868;351869;351870;351871;351872;351873;351874;351875;351876;351877;351878 214553;214554;214555;214556;214557;214558;214559;214560;214561;214562;214563;214564;214565;214566;214567;214568;214569;214570 214564 16 SQEEFFHTFNALLEGNQQIILTSDRYPK Unmodified 3324.6415 0.64150566 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 52.304 51.16 4 5.3098E-07 20518 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 89.039 87.133 63972000 0 0 0 0 0 0 0 0 0 20216000 16691000 12342000 0 0 0 0 0 7164800 0 0 0 0 7558000 0 18925 78 18329 351879;351880;351881;351882;351883 214571;214572;214573;214574 214572 4 SQETTHFGFQTVAK Unmodified 1579.7631 0.76307078 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 21.551 21.627 2;3 2.7884E-20 8796 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 222.94 193.19 1140500000 59148000 49962000 54470000 9955300 12661000 12114000 120680000 133340000 112750000 15799000 17198000 10639000 68811000 67383000 67350000 0 0 0 113160000 109210000 82362000 8991900 7393900 7116500 18926 408 18330 351884;351885;351886;351887;351888;351889;351890;351891;351892;351893;351894;351895;351896;351897;351898;351899;351900;351901;351902;351903;351904;351905;351906;351907;351908;351909;351910;351911;351912;351913;351914;351915;351916;351917;351918;351919;351920;351921;351922;351923;351924;351925 214575;214576;214577;214578;214579;214580;214581;214582;214583;214584;214585;214586;214587;214588;214589;214590;214591;214592;214593;214594;214595;214596;214597;214598;214599;214600;214601;214602;214603 214587 26 SQFFYIHPDNPQQR Unmodified 1775.838 0.83796706 962 P0AFR4 yciO Uncharacterized protein YciO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 2 2 2 1 1 2 28.551 27.354 2;3 4.0619E-35 12606 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 260.97 256.79 548940000 137200000 117570000 105990000 1338800 0 1322000 6766400 9128000 6350300 0 0 0 36665000 34177000 27700000 0 0 0 8103000 8642000 47992000 0 0 0 18927 962 18331 351926;351927;351928;351929;351930;351931;351932;351933;351934;351935;351936;351937;351938;351939;351940;351941;351942;351943;351944;351945;351946 214604;214605;214606;214607;214608;214609;214610;214611;214612;214613;214614;214615 214608 12 SQGLDDYICK Unmodified 1197.5336 0.53358811 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.429 25.164 2 0.00038667 10779 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 106.42 99.273 4349500000 208470000 229500000 222780000 508990 600170 682680 410790000 415690000 406620000 1436300 1304400 1497300 361780000 371100000 344670000 0 0 0 423600000 480830000 463970000 1024500 1074800 1538700 18928 337 18332 351947;351948;351949;351950;351951;351952;351953;351954;351955;351956;351957;351958;351959;351960;351961;351962;351963;351964;351965;351966;351967 214616;214617;214618;214619;214620;214621;214622;214623;214624;214625;214626 214626 11 SQGLNALSEAIIAATK Unmodified 1585.8675 0.86753585 1014 P0AGF2 csdE Sulfur acceptor protein CsdE yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 51.372 50.096 2 1.0662E-06 24455 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.61 127.73 134030000 25568000 20721000 21737000 0 0 0 15144000 0 14654000 0 0 0 0 0 0 0 0 0 18695000 0 17517000 0 0 0 18929 1014 18333 351968;351969;351970;351971;351972;351973;351974 214627;214628 214627 2 SQGNMAVTYKPLSDSDWQELGASDPGLASGDYK Unmodified 3486.5885 0.5885434 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 45.118 42.701 3 0.10637 17168 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 27.967 27.965 10524000 0 0 0 0 0 0 0 0 0 4732800 2649700 3141900 0 0 0 0 0 0 0 0 0 0 0 0 18930 477 18334 351975;351976;351977 214629 214629 1 SQGQEEAEK Unmodified 1004.4411 0.44106794 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.668 7.3052 2 0.00056384 899 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.01 95.786 265440000 14857000 17386000 12226000 724710 759440 676510 18273000 20708000 18732000 2321600 2172800 1870200 18887000 17231000 18560000 0 334500 305320 27488000 30028000 37311000 1521800 1746300 1321100 18931 648 18335 351978;351979;351980;351981;351982;351983;351984;351985;351986;351987;351988;351989;351990;351991;351992;351993;351994;351995;351996;351997;351998;351999;352000 214630;214631;214632;214633;214634;214635;214636 214634 7 SQGQEEAEKLR Unmodified 1273.6262 0.62624295 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.543 11.956 3 0.0032912 2349 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 58.511 50.101 133660000 0 0 0 11800000 16239000 14485000 0 0 4751500 15465000 14190000 14777000 0 0 0 3947800 5767000 6971600 0 0 0 8146300 8321600 8801200 18932 648 18336 352001;352002;352003;352004;352005;352006;352007;352008;352009;352010;352011;352012;352013 214637;214638 214638 2 SQGVAAYGAK Unmodified 950.48214 0.48214489 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 12.234 12.747 2 0.0025666 2689 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 78.149 55.527 168220000 30468000 0 0 14404000 14710000 14541000 0 0 0 43972000 0 0 0 0 0 8715000 9932400 9007200 1535800 0 0 0 0 20929000 18933 1426 18337 352014;352015;352016;352017;352018;352019;352020;352021;352022;352023 214639;214640;214641;214642 214641 4 SQHLPLVAAQPGIWMAEK Unmodified 1975.035 0.034952303 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 40.921 39.237 3 0.0045839 19160 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 49.592 48.956 91258000 4114200 4127100 0 0 0 0 5865400 4678400 3600500 0 0 0 10453000 9116700 9605900 0 0 0 13891000 12374000 13432000 0 0 0 18934 1070 18338 352024;352025;352026;352027;352028;352029;352030;352031;352032;352033;352034 214643;214644;214645 214643 3 SQILDEAK Unmodified 902.47091 0.4709115 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 15.018 15.556 2 0.0010156 5114 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 113.5 74.698 2132200000 44859000 52190000 0 5637300 5883000 6158300 200570000 220380000 204390000 32587000 30080000 28818000 144320000 122630000 114850000 0 8600100 11062000 302390000 290460000 256470000 15004000 18301000 16593000 18935 642 18339 352035;352036;352037;352038;352039;352040;352041;352042;352043;352044;352045;352046;352047;352048;352049;352050;352051;352052;352053;352054;352055;352056;352057;352058 214646;214647;214648;214649;214650;214651;214652;214653;214654;214655;214656;214657;214658;214659;214660;214661;214662;214663 214657 18 SQILDEAKAEAEQER Unmodified 1715.8326 0.83260691 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.156 24.149 2;3 1.2086E-14 8333 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 184.11 173.2 672000000 0 0 0 24387000 22795000 21117000 0 0 0 106000000 100660000 95935000 0 0 0 23912000 18805000 23667000 0 0 0 90297000 71145000 73276000 18936 642 18340 352059;352060;352061;352062;352063;352064;352065;352066;352067;352068;352069;352070;352071;352072;352073;352074;352075;352076;352077;352078;352079;352080;352081;352082 214664;214665;214666;214667;214668;214669;214670;214671;214672;214673;214674;214675;214676;214677;214678;214679;214680;214681;214682;214683;214684;214685 214679 22 SQILSGIR Unmodified 872.50797 0.50796571 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 21.824 21.762 2 0.15839 8662 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 47.657 24.615 1173200000 0 0 0 0 0 0 0 0 0 0 0 0 337020000 0 0 0 0 0 2998100 425560000 407640000 0 0 0 18937 448 18341 352083;352084;352085;352086 214686 214686 0 SQKPDVNAK Unmodified 985.51926 0.51925868 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.2761 7.8717 2 3.4472E-05 1870 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 156.75 146.34 227930000 0 0 0 0 0 0 18199000 10861000 12474000 17470000 15056000 16511000 14935000 14688000 11237000 10054000 0 0 9653700 12295000 10018000 19331000 18259000 16892000 18938 1739 18342 352087;352088;352089;352090;352091;352092;352093;352094;352095;352096;352097;352098;352099;352100;352101;352102;352103 214687;214688;214689;214690;214691;214692;214693;214694;214695 214688 9 SQLACGNLAHGFAACQPEDK Unmodified 2172.9681 0.9680713 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.964 23.834 3 3.7406E-18 10779 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 134.29 130.48 494600000 3297500 5163900 5650400 0 0 0 74711000 70925000 71199000 1080500 1571600 1116600 38529000 36299000 28098000 0 0 0 52893000 47469000 54414000 0 1212700 971660 18939 785 18343 352104;352105;352106;352107;352108;352109;352110;352111;352112;352113;352114;352115;352116;352117;352118;352119;352120 214696;214697;214698;214699;214700;214701;214702;214703;214704 214697 9 SQLDWLVPHQANLR Unmodified 1675.8794 0.87943794 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 1 2 2 2 1 39.192 37.496 2;3 1.8256E-26 18572 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 234.67 228.56 2107600000 168020000 162700000 172020000 3314900 2645900 0 153530000 150810000 165550000 0 0 0 216670000 191910000 200060000 0 0 0 262180000 220170000 38019000 0 0 0 18940 273 18344 352121;352122;352123;352124;352125;352126;352127;352128;352129;352130;352131;352132;352133;352134;352135;352136;352137;352138;352139;352140;352141;352142;352143;352144 214705;214706;214707;214708;214709;214710;214711;214712;214713;214714;214715;214716;214717;214718;214719;214720;214721;214722;214723;214724;214725 214710 21 SQLDYVSAYRR Unmodified 1356.6786 0.67861287 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 13.027 13.886 3 0.17233 3782 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 8.41 4.0695 56132000 0 0 0 0 0 0 0 6264200 7011500 0 0 0 0 0 42856000 0 0 0 0 0 0 0 0 0 18941 193 18345 352145;352146;352147 214726 214726 1 SQLEEIIK Unmodified 958.53351 0.53351176 1502 P37903 uspF Universal stress protein F yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.563 25.437 2 0.010731 11686 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 77.923 33.23 1017500000 113110000 95034000 81542000 1834100 1756200 1940300 156800000 172040000 152820000 0 0 1385000 51780000 47059000 45898000 0 0 0 31301000 34040000 29119000 0 0 0 18942 1502 18346 352148;352149;352150;352151;352152;352153;352154;352155;352156;352157;352158;352159;352160;352161;352162;352163 214727;214728;214729;214730;214731;214732 214728 5 SQLEEIIKK Unmodified 1086.6285 0.62847478 1502 P37903 uspF Universal stress protein F yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 1 1 2 2 2 2 2 2 19.041 19.389 2;3 8.3918E-05 7267 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 167.04 131.68 1474500000 125750000 138660000 102460000 28033000 28192000 22379000 233490000 213970000 218810000 12160000 12931000 12194000 65322000 56043000 43823000 0 1680900 1770500 53535000 43589000 44629000 5370900 4557500 5161500 18943 1502 18347 352164;352165;352166;352167;352168;352169;352170;352171;352172;352173;352174;352175;352176;352177;352178;352179;352180;352181;352182;352183;352184;352185;352186;352187;352188;352189;352190;352191;352192;352193;352194;352195;352196;352197;352198;352199;352200;352201;352202;352203;352204;352205;352206;352207;352208 214733;214734;214735;214736;214737;214738;214739;214740;214741;214742;214743;214744;214745;214746;214747;214748;214749;214750;214751;214752;214753;214754;214755;214756;214757;214758;214759;214760;214761;214762;214763;214764;214765;214766;214767;214768;214769 214760 37 SQLIDKIAAGADISK Unmodified 1528.8461 0.84607213 727 P0ACF4 hupB DNA-binding protein HU-beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 1 2 1 1 1 30.99 29.763 3 5.3768E-06 9883 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 78.597 70.922 82828000 0 0 0 4596200 4088600 3569700 0 0 0 1922800 2539100 1724500 0 0 0 15944000 15675000 19779000 0 0 0 3929100 4713700 4345700 18944 727 18348 352209;352210;352211;352212;352213;352214;352215;352216;352217;352218;352219;352220;352221;352222 214770;214771;214772;214773;214774;214775 214772 6 SQLMGACR Unmodified 921.41606 0.41605594 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.29 13.825 2 0.0032142 3463 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 94.006 94.006 209440000 14367000 12471000 16187000 0 0 0 16135000 0 15332000 0 5511600 5205100 44179000 13425000 10311000 5642000 4927200 4254300 16986000 0 14926000 3756100 3221000 2600700 18945 1787 18349 352223;352224;352225;352226;352227;352228;352229;352230;352231;352232;352233;352234;352235;352236;352237;352238;352239;352240 214776;214777;214778;214779;214780;214781;214782;214783;214784 214776 4 SQLNYSEENLK Unmodified 1323.6307 0.63065962 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.287 19.804 2 1.4162E-19 7169 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 228.41 225.58 1361300000 108340000 103250000 94721000 555190 552650 501020 116790000 114250000 105140000 0 0 0 98306000 108100000 86647000 0 0 0 137770000 155210000 131170000 0 0 0 18946 1188 18350 352241;352242;352243;352244;352245;352246;352247;352248;352249;352250;352251;352252;352253;352254;352255 214785;214786;214787;214788;214789;214790;214791;214792;214793;214794;214795;214796 214796 12 SQLPGMVEDAMK Unmodified 1304.6105 0.61045823 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.189 32.741 2 0.0012697 14909 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 73.781 65.249 990380000 91173000 101780000 82917000 0 0 0 79853000 88364000 82713000 0 0 0 80032000 74340000 77304000 0 0 0 78989000 82478000 70441000 0 0 0 18947 1253 18351 352256;352257;352258;352259;352260;352261;352262;352263;352264;352265;352266;352267 214797;214798;214799 214799 3 SQLTDDDSQFK Unmodified 1282.5677 0.56772501 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.364 18.988 2 0.0007585 7207 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.533 83.135 185250000 0 12379000 0 865160 0 614330 15162000 16721000 16405000 0 0 0 19680000 19133000 18293000 0 0 0 25518000 20876000 19600000 0 0 0 18948 1494 18352 352268;352269;352270;352271;352272;352273;352274;352275;352276;352277;352278;352279 214800;214801 214800 2 SQLTDDDSQFKNNPSELTIFYPAVPR Unmodified 2981.4407 0.44068059 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 48.688 47.039 3 0.0016105 18650 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 56.625 54.131 14289000 0 0 0 872330 0 0 0 0 0 3974200 0 0 0 0 0 0 0 0 0 0 0 3790200 2556500 3095700 18949 1494 18353 352280;352281;352282;352283;352284 214802;214803 214802 2 SQLTHINAAGEAHMVDVSAK Unmodified 2078.0215 0.021487084 307 P0A738 moaC Cyclic pyranopterin monophosphate synthase accessory protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 21.868 21.84 3 6.8219E-05 8936 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 75.539 65.978 144140000 27444000 28214000 19553000 0 0 0 10109000 12739000 12467000 0 0 0 0 0 0 0 0 0 10740000 10318000 12559000 0 0 0 18950 307 18354 352285;352286;352287;352288;352289;352290;352291;352292;352293 214804;214805 214805 2 SQMEIFIK Unmodified 994.51575 0.5157532 387 P0A812 ruvB Holliday junction ATP-dependent DNA helicase RuvB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.551 30.972 2 0.017357 12308 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 67.032 45.261 81100000 9171600 9860200 8195100 0 0 895600 6706300 8116900 4665500 3273700 3895000 2916200 5165900 0 4129800 0 0 0 3657400 6497200 3953500 0 0 0 18951 387 18355 352294;352295;352296;352297;352298;352299;352300;352301;352302;352303;352304;352305;352306;352307;352308 214806;214807 214806 2 SQMITLK Unmodified 819.45242 0.45242467 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.588 20.077 2 0.1431 7811 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 46.016 21.384 504260000 51648000 48938000 39205000 3684100 2820200 2849200 46257000 53321000 51839000 0 0 0 33849000 33955000 23168000 0 0 0 39603000 37305000 35813000 0 0 0 18952 839 18356 352309;352310;352311;352312;352313;352314;352315;352316;352317;352318;352319;352320;352321;352322;352323 214808 214808 1 SQNDSEHVSVDGR Unmodified 1428.6229 0.62294848 1682 P64519 yodD Uncharacterized protein YodD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 11.255 12.108 2 8.2698E-24 3109 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 232.48 221.67 114370000 28577000 23763000 17692000 0 0 0 0 0 0 0 0 0 16624000 11682000 16036000 0 0 0 0 0 0 0 0 0 18953 1682 18357 352324;352325;352326;352327;352328;352329 214809;214810;214811 214810 3 SQNGAAMSFGR Unmodified 1124.5033 0.50329104 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 17.64 18.107 2 2.3955E-10 6614 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 190.62 171.84 2193700000 73884000 62644000 63866000 4929600 5767900 6033900 290800000 294750000 294870000 8655800 9300800 8526700 239800000 200120000 187410000 4429600 3399700 3243200 144720000 133230000 137820000 4462800 5554800 5466300 18954 212 18358 352330;352331;352332;352333;352334;352335;352336;352337;352338;352339;352340;352341;352342;352343;352344;352345;352346;352347;352348;352349;352350;352351;352352;352353;352354;352355;352356 214812;214813;214814;214815;214816;214817;214818;214819;214820;214821;214822;214823;214824;214825;214826;214827;214828;214829;214830 214822 19 SQNNPLR Unmodified 827.42496 0.42496436 1977 Q47690 mmuM Homocysteine S-methyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 4.7236 5.6098 2 0.087593 1021 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 56.165 43.905 1199900000 0 0 0 0 0 0 0 246160000 240710000 0 0 0 110120000 120530000 120400000 0 0 0 118710000 123920000 119360000 0 0 0 18955 1977 18359 352357;352358;352359;352360;352361;352362;352363;352364 214831;214832;214833;214834 214831 4 SQNVYQFIDLQR Unmodified 1509.7576 0.75759147 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.783 40.08 2 1.0296E-16 19627 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.53 176 702040000 145560000 120780000 123040000 1131300 901730 861920 39610000 46355000 42061000 0 0 0 24004000 28150000 23382000 0 0 0 34401000 38386000 33417000 0 0 0 18956 219 18360 352365;352366;352367;352368;352369;352370;352371;352372;352373;352374;352375;352376;352377;352378;352379 214835;214836;214837;214838;214839;214840;214841 214838 5 SQPEVLDYLQQENSYGHR Unmodified 2162.0029 0.0028601316 1251 P24555 ptrB Protease 2 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 36.426 34.958 3 4.8286E-05 16905 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 61.648 59.05 60122000 13670000 7176400 8301300 0 0 0 0 4999200 0 0 0 0 3130500 4236200 3643900 0 0 0 5988300 4790200 4185900 0 0 0 18957 1251 18361 352380;352381;352382;352383;352384;352385;352386;352387;352388;352389 214842 214842 1 SQPEVNDAITK Unmodified 1200.5986 0.59863121 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.469 16.082 2 0.00026809 5382 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 95.775 80.145 323030000 37189000 40250000 31901000 4956800 4181600 4208200 21378000 23471000 19208000 6772300 5425600 6039800 18644000 14733000 13421000 0 0 1252600 21422000 18535000 19183000 3879300 3410400 3564700 18958 1829 18362 352390;352391;352392;352393;352394;352395;352396;352397;352398;352399;352400;352401;352402;352403;352404;352405;352406;352407;352408;352409;352410;352411 214843;214844;214845;214846;214847;214848;214849;214850;214851;214852;214853 214846 11 SQPIARPR Unmodified 923.5301 0.53009814 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.48 10.982 2 0.14045 2141 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 53.163 51.021 103210000 1485800 3449300 2035500 3033300 0 0 0 0 0 5343100 0 0 0 0 0 3034900 1529800 0 2395200 2091200 1999600 23979000 31241000 21595000 18959 1067 18363 352412;352413;352414;352415;352416;352417;352418;352419;352420;352421;352422;352423;352424 214854 214854 1 SQPIFNDK Unmodified 947.47125 0.47124585 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.848 16.396 2 0.0062957 4758 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 85.212 69.772 1189600000 32773000 29692000 25038000 852670 646180 632740 138010000 142930000 132010000 50663000 47041000 32006000 68604000 55120000 57059000 22516000 14272000 14155000 98560000 97477000 99421000 10658000 8763000 10670000 18960 30 18364 352425;352426;352427;352428;352429;352430;352431;352432;352433;352434;352435;352436;352437;352438;352439;352440;352441;352442;352443;352444;352445;352446;352447;352448 214855;214856;214857;214858;214859;214860;214861;214862;214863;214864;214865;214866;214867 214856 13 SQPIFNDKQFQEALSR Unmodified 1906.9537 0.95372509 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 35.043 33.572 3 7.7587E-07 13264 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 104.28 94.221 57922000 0 0 0 0 725430 0 0 0 0 8674000 10004000 9172600 0 0 0 6821900 6270200 6240700 0 0 0 0 4843700 5169800 18961 30 18365 352449;352450;352451;352452;352453;352454;352455;352456;352457 214868;214869;214870;214871;214872 214872 5 SQPLNADQELVSDVVACQLVIK Unmodified 2425.2523 0.25227488 763 P0AD10 yecJ Uncharacterized protein YecJ yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 2 1 1 2 2 2 1 1 2 2 2 1 1 1 53.046 51.721 2;3 9.1641E-16 25286 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.73 106.62 434560000 13314000 28611000 15085000 0 0 0 38523000 37652000 24521000 2316300 0 0 36743000 34579000 32375000 3625800 0 4672800 45588000 52393000 51746000 5600700 2180100 5029000 18962 763 18366 352458;352459;352460;352461;352462;352463;352464;352465;352466;352467;352468;352469;352470;352471;352472;352473;352474;352475;352476;352477;352478;352479;352480;352481;352482;352483;352484 214873;214874;214875;214876;214877;214878;214879;214880;214881 214873 9 SQPVLVQPGQTGAMNSTLWVGPEIQDK Unmodified 2879.4487 0.44874286 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 1 1 2 2 2 49.488 48.164 2;3 2.2997E-07 23327 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 149.74 145.9 292910000 17060000 10490000 0 0 0 0 20937000 22845000 20990000 0 0 0 30010000 34276000 6031800 5526300 0 0 45978000 41473000 37292000 0 0 0 18963 1267 18367 352485;352486;352487;352488;352489;352490;352491;352492;352493;352494;352495;352496;352497;352498;352499;352500;352501;352502;352503;352504;352505 214882;214883;214884;214885;214886;214887;214888;214889 214888 8 SQQNGAVDAAK Unmodified 1087.5258 0.52580062 1637 P61316 lolA Outer-membrane lipoprotein carrier protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 9.8447 10.648 2 0.0014926 2057 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 79.148 66.111 136230000 15132000 14199000 12504000 0 0 0 253470 3567600 4011400 0 0 0 0 17107000 14355000 0 0 0 19093000 17978000 18027000 0 0 0 18964 1637 18368 352506;352507;352508;352509;352510;352511;352512;352513;352514;352515;352516 214890;214891 214890 2 SQQVIIFDTTLR Unmodified 1419.7722 0.7721789 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 42.127 40.435 2 0.058422 19935 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 45.879 38.751 95834000 28425000 26115000 21230000 0 0 0 2676400 4231800 0 0 0 0 3593400 0 2616200 0 0 0 3472700 0 3472700 0 0 0 18965 204 18369 352517;352518;352519;352520;352521;352522;352523;352524;352525 214892;214893 214892 0 SQQVTDACK Unmodified 1035.4655 0.46550855 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 10.141 10.996 2 0.00077595 2320 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.54 92.597 435850000 0 0 0 0 0 0 9413700 10163000 7663400 0 0 0 51067000 65624000 62776000 0 0 0 75471000 87757000 65921000 0 0 0 18966 696 18370 352526;352527;352528;352529;352530;352531;352532;352533;352534;352535 214894;214895;214896;214897;214898;214899;214900;214901;214902;214903 214894 10 SQQVTDACKK Unmodified 1163.5605 0.56047157 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 5.4284 6.2776 2 0.00032623 1161 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 115.71 91.684 132840000 18367000 16721000 11929000 0 0 0 3653100 4332700 3818700 0 0 0 9411300 9532300 7963100 0 0 0 18188000 15200000 13726000 0 0 0 18967 696 18371 352536;352537;352538;352539;352540;352541;352542;352543;352544;352545;352546;352547 214904;214905;214906;214907;214908;214909 214904 6 SQSGDFTR Unmodified 896.39881 0.39880919 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 11.281 12.052 2 0.00087898 3145 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.29 103.85 298620000 101070000 98602000 90182000 0 0 0 0 0 5517500 0 0 0 3242300 0 0 0 0 0 0 0 0 0 0 0 18968 1525 18372 352548;352549;352550;352551;352552 214910;214911;214912 214910 3 SQSLNVVER Unmodified 1030.5407 0.5407224 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.127 16.906 2 0.017552 5932 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 65.305 52.949 180880000 0 4761800 4543900 0 0 0 9681600 7682900 9200500 0 0 0 11437000 9665200 11403000 0 0 0 37010000 38935000 35434000 0 1128300 0 18969 865 18373 352553;352554;352555;352556;352557;352558;352559;352560;352561;352562;352563;352564 214913;214914;214915 214913 0 SQSNPMPIIMVTAK Unmodified 1515.7789 0.77892054 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 39.296 37.78 2;3 5.5389E-08 18716 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 142.76 136.53 1425900000 201730000 184630000 170770000 9316600 9263400 10027000 74351000 72734000 74858000 10051000 11016000 9037200 67642000 64611000 64569000 49261000 26890000 30190000 86023000 93087000 88651000 6117800 5045600 5995100 18970 570 18374 352565;352566;352567;352568;352569;352570;352571;352572;352573;352574;352575;352576;352577;352578;352579;352580;352581;352582;352583;352584;352585;352586;352587;352588;352589;352590;352591;352592;352593;352594;352595;352596;352597;352598;352599;352600;352601;352602;352603;352604;352605;352606 214916;214917;214918;214919;214920;214921;214922;214923;214924;214925;214926;214927;214928;214929;214930;214931;214932;214933;214934;214935;214936;214937;214938;214939 214920 23 SQSNPMPIIMVTAKGEEVDR Unmodified 2201.082 0.08203843 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 1 By MS/MS By matching 1 1 34.208 34.215 3 0.0953 12252 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 29.766 6.4374 4640500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2448500 0 2192000 0 0 0 0 0 0 18971 570 18375 352607;352608 214940 214940 1 SQSTVGAGDSMVGAMTLK Unmodified 1738.823 0.8229702 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 34.287 32.576 2 1.5886E-06 15866 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.2 87.394 202350000 0 0 0 0 0 0 82747000 74214000 2661300 0 0 0 0 0 42724000 0 0 0 0 0 0 0 0 0 18972 145 18376 352609;352610;352611;352612 214941;214942;214943 214941 3 SQTAFALMGLLAANGR Unmodified 1619.8454 0.84536062 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 54.037 52.626 2 0.019525 21195 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 73.466 61.6 24000000 0 0 0 5477700 7217600 6824100 0 0 0 2458700 0 2021600 0 0 0 0 0 0 0 0 0 0 0 0 18973 1807 18377 352613;352614;352615;352616;352617 214944 214944 0 SQTEVAAIMGVSR Unmodified 1347.6816 0.68164933 1530 P39356 yjhU Uncharacterized transcriptional regulator YjhU yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 32.614 30.919 2 0.059233 14772 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 44.299 35.436 28006000 9112800 0 0 0 0 0 0 3940900 4528500 3884000 0 0 0 0 0 0 0 0 0 0 4064800 0 0 2474900 18974 1530 18378 352618;352619;352620;352621;352622;352623 214945;214946 214945 0 SQTGFGVEQGR Unmodified 1164.5523 0.55234972 1401 P32705 actP Cation/acetate symporter ActP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 15.461 16.304 2 5.2824E-05 4111 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 128.86 119.44 146610000 34685000 35910000 34368000 14684000 14317000 12651000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18975 1401 18379 352624;352625;352626;352627;352628;352629 214947;214948;214949;214950 214948 3 SQTIDLTLDGLSCGHCVK Unmodified 2002.9452 0.9452106 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 35.56 34.023 2;3 2.5962E-36 16629 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 273.72 271.1 2192100000 269240000 256510000 189370000 1522000 1518800 1173000 330680000 326490000 286280000 6543500 4670000 7095600 87113000 79824000 81763000 1627900 1591100 1523300 75998000 88473000 89861000 0 1793500 1479000 18976 1980 18380 352630;352631;352632;352633;352634;352635;352636;352637;352638;352639;352640;352641;352642;352643;352644;352645;352646;352647;352648;352649;352650;352651;352652;352653;352654;352655;352656;352657;352658;352659;352660;352661;352662;352663;352664 214951;214952;214953;214954;214955;214956;214957;214958;214959;214960;214961;214962;214963;214964;214965;214966;214967;214968;214969 214954 19 SQTITQSR Unmodified 919.47231 0.47230849 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.428 11.243 2 0.0017744 2629 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.04 99.132 700650000 140860000 129020000 100780000 0 0 0 42810000 46223000 36519000 0 0 0 22450000 24491000 20532000 0 0 0 43617000 52099000 41262000 0 0 0 18977 1465 18381 352665;352666;352667;352668;352669;352670;352671;352672;352673;352674;352675;352676 214970;214971;214972;214973;214974;214975;214976 214974 6 SQTNDLDDLDGDTQDFQIHR Unmodified 2332.0204 0.020360689 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 2 2 2 1 1 1 1 1 1 32.927 31.378 3 4.0566E-07 15968 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 101.61 96.087 6295600000 0 2461800000 2278900000 0 0 0 121930000 116670000 11012000 0 2687500 0 0 4750600 582450000 0 0 0 41449000 36799000 637200000 0 0 0 18978 194 18382 352677;352678;352679;352680;352681;352682;352683;352684;352685;352686;352687;352688;352689;352690 214977;214978;214979;214980;214981;214982 214978 6 SQTSTLK Unmodified 763.40758 0.40758296 879 P0AER0 glpF Glycerol uptake facilitator protein yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 7.8463 8.6472 2 0.072193 1827 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.981 49.231 54055000 2095200 1679800 1868900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16747000 16700000 14965000 0 0 0 18979 879 18383 352691;352692;352693;352694;352695;352696 214983 214983 1 SQTVEGVTDTR Unmodified 1191.5731 0.57314474 1156 P19318 narY Respiratory nitrate reductase 2 beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 13.428 14.056 2 5.4592E-05 4309 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.52 115.48 53276000 4981000 5313000 6970800 0 0 0 11182000 10012000 10216000 0 2515600 2086100 0 0 0 0 0 0 0 0 0 0 0 0 18980 1156 18384 352697;352698;352699;352700;352701;352702;352703;352704 214984;214985;214986;214987;214988;214989;214990 214986 6 SQTVHFQGNPVTVANSIPQAGSK Unmodified 2366.1979 0.19787154 400 P0A862 tpx Thiol peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 29.721 28.362 2;3 1.2205E-63 13426 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 354.36 346.73 18035000000 1745000000 1906200000 1618400000 10886000 11851000 11635000 1382100000 1243100000 1343300000 0 0 0 1241000000 1248100000 1219300000 0 0 0 1665800000 1726700000 1649500000 4019300 4178200 3613100 18981 400 18385 352705;352706;352707;352708;352709;352710;352711;352712;352713;352714;352715;352716;352717;352718;352719;352720;352721;352722;352723;352724;352725;352726;352727;352728;352729;352730;352731;352732;352733;352734 214991;214992;214993;214994;214995;214996;214997;214998;214999;215000;215001;215002;215003;215004;215005;215006;215007;215008;215009;215010;215011;215012;215013;215014;215015;215016;215017;215018;215019 214994 29 SQVGMVLNLDK Unmodified 1202.6329 0.63290823 1067;1156 P11349;P19318 narH;narY Respiratory nitrate reductase 1 beta chain;Respiratory nitrate reductase 2 beta chain no no 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34 32.535 2 7.8991E-05 15474 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 123.86 96.733 792730000 16730000 17407000 16504000 4759400 5410000 5934600 55761000 50438000 52448000 13020000 12721000 16528000 47160000 44837000 46908000 5906000 3722100 6131000 60957000 63797000 62010000 54789000 62176000 66676000 18982 1067;1156 18386 352735;352736;352737;352738;352739;352740;352741;352742;352743;352744;352745;352746;352747;352748;352749;352750;352751;352752;352753;352754;352755;352756;352757;352758 215020;215021;215022;215023;215024;215025;215026;215027;215028;215029;215030;215031;215032;215033;215034;215035;215036;215037;215038;215039 215031 18 SQVIMDVENHLYAR Unmodified 1673.8195 0.8195398 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 33.322 31.988 3 2.3383E-06 14581 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 98.942 93.162 103150000 0 0 0 0 0 0 0 0 0 0 0 0 16634000 12783000 17265000 0 0 0 20553000 17126000 18792000 0 0 0 18983 1548 18387 352759;352760;352761;352762;352763;352764 215040;215041;215042;215043;215044;215045 215044 6 SQVLITGATGLVGGHLLR Unmodified 1791.0367 0.036666863 1569 P45469 yraR Uncharacterized protein YraR yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.863 38.985 3 1.0829E-06 15543 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 95.767 91.665 203450000 15567000 14182000 13423000 5377000 4979300 5520400 23577000 16145000 16333000 12765000 13287000 13911000 0 6004900 5655300 0 0 0 10305000 10487000 9474600 3433100 3028300 0 18984 1569 18388 352765;352766;352767;352768;352769;352770;352771;352772;352773;352774;352775;352776;352777;352778;352779;352780;352781;352782;352783 215046;215047;215048;215049 215048 4 SQVPFAWAPGWNSPQAWNK Unmodified 2170.0385 0.038457777 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 51.837 50.704 2;3 8.3949E-10 24980 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 162.41 150.03 716660000 23029000 22119000 8362000 22282000 18766000 18764000 44141000 35539000 24785000 37142000 34519000 29835000 38130000 36758000 33056000 15648000 7953600 10433000 62722000 58283000 61462000 26812000 21865000 24252000 18985 1427 18389 352784;352785;352786;352787;352788;352789;352790;352791;352792;352793;352794;352795;352796;352797;352798;352799;352800;352801;352802;352803;352804;352805;352806;352807;352808;352809;352810;352811;352812;352813;352814;352815;352816;352817;352818;352819;352820;352821;352822;352823;352824;352825;352826;352827;352828;352829 215050;215051;215052;215053;215054;215055;215056;215057;215058;215059;215060;215061;215062;215063;215064;215065;215066;215067;215068;215069;215070;215071;215072;215073;215074;215075;215076;215077;215078;215079;215080;215081 215062 32 SQVQSGILPEHCR Unmodified 1509.7358 0.73581017 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 15.457 16.243 2;3 3.6605E-31 5475 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 252.14 250.2 2136200000 108480000 95948000 89431000 483880 0 0 239150000 312740000 234010000 0 0 0 189900000 169030000 162270000 0 0 0 165190000 184400000 184680000 533730 0 0 18986 1868 18390 352830;352831;352832;352833;352834;352835;352836;352837;352838;352839;352840;352841;352842;352843;352844;352845;352846;352847;352848;352849;352850;352851;352852;352853;352854;352855 215082;215083;215084;215085;215086;215087;215088;215089;215090;215091;215092;215093;215094;215095;215096;215097;215098;215099;215100;215101;215102;215103 215090 22 SQVSTEFIPTR Unmodified 1263.6459 0.64591575 900 P0AEZ9 moaB Molybdenum cofactor biosynthesis protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.532 26.57 2 8.0239E-05 11987 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.63 102.16 279490000 38520000 34888000 33729000 0 1493700 1083500 32596000 29673000 30054000 0 0 0 5725600 5814000 5467500 8456500 6479500 7506900 13709000 11559000 12731000 0 0 0 18987 900 18391 352856;352857;352858;352859;352860;352861;352862;352863;352864;352865;352866;352867;352868;352869;352870;352871;352872 215104;215105;215106;215107;215108;215109;215110;215111;215112;215113;215114;215115;215116;215117 215114 14 SQVTFQYDDGK Unmodified 1286.5779 0.57789577 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.748 21.65 2 1.9075E-07 9132 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.66 166.66 2252000000 171890000 157900000 127970000 1571800 2105200 2805400 278460000 254430000 273800000 14633000 12470000 6214300 151600000 134400000 150040000 1082900 672450 565420 174000000 178150000 152300000 0 2546400 2412200 18988 388 18392 352873;352874;352875;352876;352877;352878;352879;352880;352881;352882;352883;352884;352885;352886;352887;352888;352889;352890;352891;352892;352893;352894;352895 215118;215119;215120;215121;215122;215123;215124;215125;215126;215127;215128;215129;215130;215131;215132;215133;215134;215135;215136;215137 215121 20 SQVTFQYDDGKIVGIDAVVLSTQHSEEIDQK Unmodified 3448.6998 0.6998084 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 44.607 42.53 4 0.058104 17036 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 35.439 30.771 49116000 0 0 0 0 7728700 5885800 0 0 0 16695000 18806000 0 0 0 0 0 0 0 0 0 0 0 0 0 18989 388 18393 352896;352897;352898;352899 215138;215139;215140 215139 3 SQVVLLPPVK Unmodified 1078.675 0.67503104 117 P05719 hsdS Type-1 restriction enzyme EcoKI specificity protein yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.174 32.708 2 0.056687 16046 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 47.603 47.603 53880000 0 3660700 3687000 0 0 0 5555200 4695400 5612900 0 0 0 4148900 3382900 2663900 0 0 0 6732300 8752000 4988700 0 0 0 18990 117 18394 352900;352901;352902;352903;352904;352905;352906;352907;352908;352909;352910 215141;215142 215141 2 SQWLGGWR Unmodified 988.4879 0.48789897 965 P0AFW2 rmf Ribosome modulation factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 34.463 32.703 2 0.00065993 15569 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.57 115.01 162970000 52389000 50902000 48213000 0 0 0 0 0 0 3893900 2663600 1994000 2912500 0 0 0 0 0 0 0 0 0 0 0 18991 965 18395 352911;352912;352913;352914;352915;352916;352917 215143;215144;215145;215146 215144 4 SQWLQDK Unmodified 903.44503 0.4450311 830 P0AE22 aphA Class B acid phosphatase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.189 17.872 2 0.028279 6670 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 68.787 57.672 591030000 46467000 41047000 44451000 0 0 0 59063000 66561000 57779000 0 0 0 51509000 45601000 43090000 0 0 0 44438000 44197000 46830000 0 0 0 18992 830 18396 352918;352919;352920;352921;352922;352923;352924;352925;352926;352927;352928;352929 215147;215148;215149;215150;215151;215152 215147 1 SQYEQLAEQNR Unmodified 1364.6321 0.6320566 13 CON__P13645 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.781 17.045 2 1.9711E-14 4746 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 216.12 213.44 97142000 0 0 0 5882700 5405400 7308200 0 0 0 1855100 2160900 9140200 0 0 0 11181000 5959100 5703400 0 0 0 6436800 16483000 19626000 + 18993 13 18397 352930;352931;352932;352933;352934;352935;352936;352937;352938;352939;352940;352941 215153;215154;215155;215156;215157;215158;215159;215160;215161;215162;215163 215160 11 SQYEQLAEQNRK Unmodified 1492.727 0.72701962 13 CON__P13645 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.966 13.338 2;3 1.1708E-39 3197 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 285.28 283.66 1069400000 0 0 0 67955000 61336000 65476000 0 0 0 38979000 52008000 37546000 0 0 0 83195000 92922000 96490000 0 0 0 121940000 197920000 153600000 + 18994 13 18398 352942;352943;352944;352945;352946;352947;352948;352949;352950;352951;352952;352953;352954;352955;352956;352957;352958;352959;352960;352961;352962;352963;352964;352965 215164;215165;215166;215167;215168;215169;215170;215171;215172;215173;215174;215175;215176;215177;215178;215179;215180;215181;215182;215183;215184;215185;215186;215187 215177 24 SQYEQLAEQNRKDAEAWFNEK Unmodified 2583.199 0.19899376 13 CON__P13645 yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 34.131 31.918 4 0.05526 12657 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 35.973 33.807 18782000 0 0 0 1951300 0 0 0 0 0 5942000 4345300 6543100 0 0 0 0 0 0 0 0 0 0 0 0 + 18995 13 18399 352966;352967;352968;352969 215188;215189;215190 215188 3 SRAPVAAPSQSVATGAVNEIHTSPYSK Unmodified 2724.3831 0.38310613 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.862 23.77 4 0.056417 8252 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 35.448 35.05 85972000 0 0 0 2748700 2702300 3792700 0 0 6342900 3727300 4429200 3689800 0 7041000 0 0 0 1561400 13365000 13348000 11075000 3272600 3550000 5326000 18996 1503 18400 352970;352971;352972;352973;352974;352975;352976;352977;352978;352979;352980;352981;352982;352983;352984 215191;215192;215193;215194;215195;215196;215197 215194 7 SRDDFGDMYEGLLQK Unmodified 1772.8039 0.80394931 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.592 38.927 3 4.9129E-05 18175 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 84.874 72.958 211020000 12261000 9226700 7967400 0 0 0 17366000 18990000 15707000 0 0 0 17109000 18543000 13703000 0 0 0 32411000 27792000 19941000 0 0 0 18997 194 18401 352985;352986;352987;352988;352989;352990;352991;352992;352993;352994;352995;352996 215198;215199;215200;215201;215202;215203;215204;215205 215204 8 SRDDLQAVMAMVR Unmodified 1490.7334 0.73336733 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 40.416 38.793 2;3 9.4032E-40 19251 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 274.53 258.94 2623400000 350410000 340140000 343760000 1245700 1934500 1808000 222340000 225180000 268230000 0 0 0 132410000 133510000 89718000 0 534280 0 161130000 179620000 171460000 0 0 0 18998 423 18402 352997;352998;352999;353000;353001;353002;353003;353004;353005;353006;353007;353008;353009;353010;353011;353012;353013;353014;353015;353016;353017;353018;353019;353020;353021;353022;353023;353024;353025 215206;215207;215208;215209;215210;215211;215212;215213;215214;215215;215216;215217;215218;215219;215220;215221;215222;215223;215224 215208 19 SRDPQLQVVTNK Unmodified 1383.747 0.74702678 851 P0AEE1 dcrB Protein DcrB yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 14.425 15.039 2;3 2.6944E-08 4751 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.17 160.13 1362400000 25400000 50763000 48909000 8856600 8542000 10803000 118330000 122380000 116190000 51681000 53585000 46873000 85667000 87208000 73775000 4941500 9314900 9926800 128570000 121440000 121200000 21479000 18000000 18512000 18999 851 18403 353026;353027;353028;353029;353030;353031;353032;353033;353034;353035;353036;353037;353038;353039;353040;353041;353042;353043;353044;353045;353046;353047;353048;353049;353050;353051;353052;353053;353054;353055;353056;353057;353058;353059;353060;353061;353062;353063;353064;353065;353066;353067;353068;353069;353070;353071;353072 215225;215226;215227;215228;215229;215230;215231;215232;215233;215234;215235;215236;215237;215238;215239;215240;215241;215242;215243;215244;215245;215246 215237 22 SRFDVVLLGIDK Unmodified 1360.7715 0.77145062 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 40.951 39.285 2;3 0.00032675 19104 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.403 84.938 203240000 14876000 15374000 12312000 0 0 0 21598000 16920000 19548000 0 0 0 13456000 14745000 16534000 0 0 0 18543000 20643000 18689000 0 0 0 19000 253 18404 353073;353074;353075;353076;353077;353078;353079;353080;353081;353082;353083;353084;353085;353086;353087;353088;353089;353090;353091;353092;353093;353094;353095;353096 215247;215248;215249;215250;215251;215252;215253;215254;215255;215256;215257 215251 10 SRFSLSTLPAADFPNLDDWQSEVEFTLPQATMK Unmodified 3740.8032 0.80322762 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 54.915 53.366 3 2.395E-13 21555 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 114.7 109.94 72636000 0 0 0 0 0 0 0 0 0 25672000 18894000 28069000 0 0 0 0 0 0 0 0 0 0 0 0 19001 497 18405 353097;353098;353099 215258 215258 1 SRGSGGLGGACGGAGFGSR Unmodified 1666.7594 0.75939916 8 CON__P48668;CON__P02538;CON__P04259 yes no 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 15.102 15.157 3 0.031674 4147 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 39.825 39.136 9887100 0 0 0 0 0 0 0 0 0 3263100 2994700 3629200 0 0 0 0 0 0 0 0 0 0 0 0 + 19002 8 18406 353100;353101;353102 215259;215260;215261 215259 3 SRLDGTDVGETALRPSQK Unmodified 1928.9916 0.99156716 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 2 1 17.445 17.824 3;4 1.5031E-09 5124 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 102.59 98.697 174870000 0 0 0 37849000 32810000 30713000 0 0 0 11207000 8832100 7716300 4147200 0 0 0 0 0 3303600 6112000 5492300 9036300 9675800 7975800 19003 1899 18407 353103;353104;353105;353106;353107;353108;353109;353110;353111;353112;353113;353114;353115;353116;353117;353118;353119;353120;353121;353122 215262;215263;215264;215265;215266;215267;215268;215269;215270;215271;215272;215273 215266 12 SRLPQNITLTEV Unmodified 1369.7565 0.75652884 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 35.313 33.795 2 7.6132E-05 16077 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.42 101.49 462990000 44914000 41945000 31000000 0 0 0 64574000 53734000 59381000 0 0 0 1763200 0 0 0 0 0 54274000 55717000 55688000 0 0 0 19004 1505 18408 353123;353124;353125;353126;353127;353128;353129;353130;353131;353132 215274;215275;215276;215277;215278;215279 215278 6 SRPAVELLAR Unmodified 1110.6509 0.65094155 1823 P76145 tam Trans-aconitate 2-methyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 1 2 1 1 19.833 20.25 2;3 0.00026688 7839 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.102 52.62 350110000 87658000 75430000 78289000 384120 0 438690 41164000 15371000 36880000 0 0 0 0 0 0 0 0 0 8525500 0 5965700 0 0 0 19005 1823 18409 353133;353134;353135;353136;353137;353138;353139;353140;353141;353142;353143;353144;353145;353146;353147 215280;215281;215282 215280 3 SRPDAVDLDPK Unmodified 1211.6146 0.61461563 1241 P24202 mrr Mrr restriction system protein yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 14.798 15.557 2 0.089145 5320 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 44.598 41.026 60914000 0 0 7543600 0 0 0 8505600 6658600 7861600 0 0 0 7600300 0 0 0 0 0 9233500 6661200 6849700 0 0 0 19006 1241 18410 353148;353149;353150;353151;353152;353153;353154;353155 215283 215283 1 SRPIVEPDNVPMDMSPK Unmodified 1910.923 0.92301859 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.362 28.067 3 1.5851E-06 13019 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.152 89.184 150470000 22882000 22444000 21499000 937910 949520 1301300 11998000 11321000 16318000 0 0 0 7475800 6689900 5981300 0 0 0 7642900 7064900 5960500 0 0 0 19007 426 18411 353156;353157;353158;353159;353160;353161;353162;353163;353164;353165;353166;353167;353168;353169;353170 215284;215285;215286;215287;215288;215289 215285 6 SRPSLPER Unmodified 940.50903 0.50902834 339 P0A7F3 pyrI Aspartate carbamoyltransferase regulatory chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 11.568 12.44 2 0.00076586 3276 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.78 111.26 2845600000 994920000 855950000 755150000 3256000 2339900 2345600 6455300 5067400 4677100 0 0 0 17696000 17964000 15532000 0 0 0 57972000 55102000 51163000 0 0 0 19008 339 18412 353171;353172;353173;353174;353175;353176;353177;353178;353179;353180;353181;353182;353183;353184;353185;353186 215290;215291;215292;215293 215292 4 SRPTIIINDLDAER Unmodified 1611.858 0.8580338 966 P0AFW4 rnk Regulator of nucleoside diphosphate kinase yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 2 2 2 2 2 2 2 28.957 27.703 2;3 4.043E-14 13138 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 214.61 181.42 1308100000 18474000 17372000 49106000 0 0 0 142680000 40275000 153420000 0 0 0 150680000 148810000 115200000 0 0 0 160310000 163210000 148600000 0 0 0 19009 966 18413 353187;353188;353189;353190;353191;353192;353193;353194;353195;353196;353197;353198;353199;353200;353201;353202;353203;353204;353205;353206;353207;353208 215294;215295;215296;215297;215298;215299;215300;215301;215302;215303;215304;215305;215306;215307;215308;215309;215310;215311 215296 18 SRPYLFSNSLAPAIVAASIK Unmodified 2104.1681 0.16807497 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 47.554 46.22 2;3 2.0582E-29 22942 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 231.71 215.36 1406900000 149600000 171450000 144630000 0 0 0 117000000 125850000 122270000 0 0 0 86845000 77560000 72570000 0 0 2087500 108390000 113370000 115310000 0 0 0 19010 635 18414 353209;353210;353211;353212;353213;353214;353215;353216;353217;353218;353219;353220;353221;353222;353223;353224;353225;353226;353227;353228;353229;353230;353231;353232;353233 215312;215313;215314;215315;215316;215317;215318;215319;215320;215321;215322;215323;215324;215325;215326;215327;215328;215329;215330;215331;215332;215333;215334;215335 215315 24 SRQDDAMVAFQNFIK Unmodified 1768.8567 0.85665359 1583 P45955 ybgF Uncharacterized protein YbgF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.649 42.134 3 1.3761E-05 20351 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 88.507 88.385 268360000 27309000 27004000 24192000 0 0 0 17741000 17356000 14967000 0 0 0 19685000 18332000 17227000 0 0 0 27755000 27762000 29031000 0 0 0 19011 1583 18415 353234;353235;353236;353237;353238;353239;353240;353241;353242;353243;353244;353245 215336;215337;215338;215339;215340;215341;215342;215343;215344;215345 215339 10 SRVCQVTGK Unmodified 1033.5339 0.53386288 356 P0A7M2 rpmB 50S ribosomal protein L28 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 5.1384 6.2256 2 0.0099975 1042 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 73.233 38.409 8528900 0 0 0 2984400 3080600 2464000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19012 356 18416 353246;353247;353248 215346;215347;215348 215346 3 SRVENASPKDE Unmodified 1230.584 0.58404378 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 1 10.307 10.579 2;3 0.00036169 1968 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 117.28 105.79 306450000 0 0 0 0 0 0 0 0 0 32604000 30373000 20189000 0 0 0 65150000 75452000 76840000 1740500 1371200 2734700 0 0 0 19013 290 18417 353249;353250;353251;353252;353253;353254;353255;353256;353257;353258;353259;353260;353261;353262;353263;353264;353265 215349;215350;215351;215352;215353;215354;215355;215356;215357;215358;215359;215360 215352 12 SRVPDLENQVK Unmodified 1283.6834 0.68336389 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.389 16.994 2 0.00041576 5947 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.283 80.507 58648000 0 0 0 1212000 1735400 1538000 4393800 4609600 5143000 1476500 1834900 4308000 3140800 2198300 2260300 1458100 0 0 5434800 6606400 5894200 3332600 2070800 0 19014 807 18418 353266;353267;353268;353269;353270;353271;353272;353273;353274;353275;353276;353277;353278;353279;353280;353281;353282;353283 215361;215362 215362 2 SSAANIPVNMALCEK Unmodified 1603.7698 0.76981241 1011 P0AGE4 sstT Serine/threonine transporter SstT yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 33.354 31.925 2 1.0357E-08 15149 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.71 141.6 154770000 50751000 37120000 37606000 9279300 10337000 9677200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19015 1011 18419 353284;353285;353286;353287;353288;353289 215363;215364;215365;215366;215367 215367 5 SSAASIPLNVEAQTR Unmodified 1542.8002 0.80018457 1913 P77529 ydjN Uncharacterized symporter YdjN yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.336 27.979 2 1.203E-06 10451 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 132.32 126.08 215230000 0 0 0 11514000 12471000 12566000 0 0 0 28255000 32217000 30422000 0 0 0 9356200 4420100 4903900 0 0 0 24577000 22649000 21879000 19016 1913 18420 353290;353291;353292;353293;353294;353295;353296;353297;353298;353299;353300;353301 215368;215369;215370;215371;215372;215373;215374;215375;215376;215377 215373 10 SSAEQLEEK Unmodified 1019.4771 0.47711909 261 P0A6L9 hscB Co-chaperone protein HscB yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.433 12.266 2 0.00092756 3240 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.635 94.243 291500000 20574000 28572000 28103000 0 0 0 19412000 18932000 20178000 0 0 0 25528000 26319000 25624000 0 0 0 25205000 24567000 28489000 0 0 0 19017 261 18421 353302;353303;353304;353305;353306;353307;353308;353309;353310;353311;353312;353313 215378;215379;215380;215381 215379 3 SSAIFINAGR Unmodified 1034.5509 0.55089316 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.684 24.606 2 0.00010283 11316 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 130.22 121.63 867470000 94164000 87593000 86700000 0 693820 0 74686000 78971000 66994000 0 0 0 58893000 54466000 57239000 0 0 0 64194000 74747000 68133000 0 0 0 19018 1485 18422 353314;353315;353316;353317;353318;353319;353320;353321;353322;353323;353324;353325;353326 215382;215383;215384;215385;215386;215387;215388;215389 215384 8 SSAINLTENEAK Unmodified 1275.6307 0.63065962 1096 P14294 topB DNA topoisomerase 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 18.084 18.701 2 0.15489 7018 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 38.804 33.746 26645000 0 0 2000700 0 231320 0 3076800 3668000 1864400 0 0 0 2192800 3007700 1925500 0 0 0 3214500 3572500 1890300 0 0 0 19019 1096 18423 353327;353328;353329;353330;353331;353332;353333;353334;353335;353336;353337 215390 215390 0 SSAIYLLRPTNK Unmodified 1361.7667 0.76669959 1750 P69828 gatA Galactitol-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 25.049 23.716 3 0.018894 8891 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 45.28 44.871 31851000 0 0 0 3447700 4154200 2553700 5427200 6242500 3755200 2938800 2395700 0 0 0 0 0 0 0 0 0 0 0 936200 0 19020 1750 18424 353338;353339;353340;353341;353342;353343;353344;353345;353346 215391;215392;215393;215394;215395 215391 3 SSALNTLTNQK Unmodified 1175.6146 0.61461563 269 P0A6P7 engB Probable GTP-binding protein EngB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.052 18.471 2 1.0795E-07 6715 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.91 176.07 311110000 24922000 27911000 28696000 1339700 2068700 1458700 24514000 24966000 25929000 3834600 7607200 8428100 15641000 15528000 14998000 0 2111500 2445700 24692000 20860000 18830000 5178500 4396100 4754200 19021 269 18425 353347;353348;353349;353350;353351;353352;353353;353354;353355;353356;353357;353358;353359;353360;353361;353362;353363;353364;353365;353366;353367;353368;353369 215396;215397;215398;215399;215400;215401;215402;215403;215404;215405;215406;215407;215408;215409;215410;215411;215412 215411 14 SSDIQPAPVAGMK Unmodified 1299.6493 0.64928657 858 P0AEG6 dsbC Thiol:disulfide interchange protein DsbC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.751 21.666 2 1.3121E-05 8509 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.5 108.19 1662100000 145050000 132640000 119340000 1246400 1069600 1092500 174140000 169260000 158220000 1922500 2161600 0 115280000 97532000 94337000 0 0 432240 158910000 150110000 136770000 0 1410100 1166900 19022 858 18426 353370;353371;353372;353373;353374;353375;353376;353377;353378;353379;353380;353381;353382;353383;353384;353385;353386;353387;353388;353389 215413;215414;215415;215416;215417;215418;215419;215420;215421;215422;215423;215424 215422 12 SSDNQFR Unmodified 852.37259 0.37259444 1855 P76402 yegP UPF0339 protein YegP yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 10.906 11.699 2 0.045433 2875 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.454 78.104 563230000 207530000 151750000 194860000 0 0 0 0 0 0 0 0 0 0 3335500 5758200 0 0 0 0 0 0 0 0 0 19023 1855 18427 353390;353391;353392;353393;353394 215425 215425 0 SSDYDAIIK Unmodified 1010.492 0.49204087 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 23.753 22.98 2 0.0011292 10024 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.439 75.054 744780000 280510000 225380000 200490000 0 394250 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38006000 0 0 0 0 19024 1111 18428 353395;353396;353397;353398;353399 215426;215427;215428 215426 3 SSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGK Unmodified 3679.6539 0.65387804 1008 P0AGD3 sodB Superoxide dismutase [Fe] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 52.133 50.886 3;4 4.5149E-26 24997 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 177.39 176.98 1118600000 104540000 99648000 110440000 0 0 0 104500000 128600000 115430000 0 0 0 56242000 56245000 67902000 0 0 0 86360000 103010000 85628000 0 0 0 19025 1008 18429 353400;353401;353402;353403;353404;353405;353406;353407;353408;353409;353410;353411;353412;353413;353414;353415;353416;353417;353418;353419;353420;353421;353422 215429;215430;215431;215432;215433;215434;215435;215436;215437;215438;215439;215440;215441 215435 13 SSELDPVNHGDLITSMGQLQR Unmodified 2296.1118 0.11175865 160 P07363 cheA Chemotaxis protein CheA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 38.882 37.315 3 1.3456E-07 18029 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.37 101.2 103610000 27017000 28640000 22867000 5240200 6181100 4733700 0 0 0 0 0 0 0 2487900 0 0 0 0 0 6441500 0 0 0 0 19026 160 18430 353423;353424;353425;353426;353427;353428;353429;353430 215442;215443;215444;215445;215446;215447 215447 6 SSELHVPSSPQLITTPTLWHLATPFEGK Unmodified 3072.592 0.59203628 865 P0AEJ2 entC Isochorismate synthase EntC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 50.636 49.332 4 1.3161E-07 23871 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 98.967 98.293 224860000 7080700 0 6007500 0 0 0 0 0 0 0 0 0 17630000 18561000 15093000 0 0 0 60597000 51510000 45043000 0 1628000 1710000 19027 865 18431 353431;353432;353433;353434;353435;353436;353437;353438;353439;353440 215448;215449;215450;215451 215450 4 SSEMLYNWVAK Unmodified 1326.6278 0.62782285 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 38.97 37.531 2 0.00021901 18328 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.01 99.362 188930000 67452000 61845000 59632000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19028 71 18432 353441;353442;353443 215452;215453;215454 215452 3 SSEVYGQTNIGGK Unmodified 1338.6416 0.64155866 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.115 16.656 2 1.3354E-12 5912 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 195.36 194.03 7961700000 148290000 156440000 123640000 0 0 0 993210000 1037500000 930160000 3350500 3373500 6401000 838210000 743240000 723380000 0 1779500 0 793860000 696400000 745510000 5641100 5405300 5925900 19029 239 18433 353444;353445;353446;353447;353448;353449;353450;353451;353452;353453;353454;353455;353456;353457;353458;353459;353460;353461;353462 215455;215456;215457;215458;215459;215460;215461;215462;215463;215464;215465;215466;215467;215468;215469 215457 15 SSFADILNHADNVINQQTR Unmodified 2142.0454 0.045393648 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 45.805 44.314 2;3 2.2966E-110 21751 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 368.94 361.39 1677900000 278270000 246370000 244270000 7476000 7815900 8882500 61003000 57308000 59615000 11503000 12185000 10498000 75814000 75624000 73703000 6097300 0 4006300 143150000 130190000 141680000 8499100 6970400 6978300 19030 1302 18434 353463;353464;353465;353466;353467;353468;353469;353470;353471;353472;353473;353474;353475;353476;353477;353478;353479;353480;353481;353482;353483;353484;353485;353486;353487;353488;353489;353490;353491;353492;353493;353494;353495;353496;353497;353498;353499 215470;215471;215472;215473;215474;215475;215476;215477;215478;215479;215480;215481;215482;215483;215484;215485;215486;215487;215488;215489;215490;215491;215492 215485 23 SSFNNINASISSINAYK Unmodified 1828.8955 0.89554151 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.028 36.439 2 3.6027E-09 14356 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 131.13 124.7 97704000 0 0 0 1240000 1043700 1292100 4764100 0 0 7013200 5952000 6191700 5727200 5899600 4254000 4266100 2756500 4009500 10212000 9695900 7947900 6293100 5045700 4100200 19031 73 18435 353500;353501;353502;353503;353504;353505;353506;353507;353508;353509;353510;353511;353512;353513;353514;353515;353516;353517;353518 215493;215494;215495;215496;215497;215498;215499;215500;215501;215502;215503;215504;215505 215498 13 SSFTAMYTAVTTHR Unmodified 1571.7402 0.74022685 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.189 30.849 2;3 1.4093E-26 14428 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 237.84 232.94 1208700000 95850000 94335000 81716000 0 0 0 104310000 110240000 97270000 0 0 0 107330000 95963000 110650000 0 0 0 101140000 110540000 99376000 0 0 0 19032 128 18436 353519;353520;353521;353522;353523;353524;353525;353526;353527;353528;353529;353530;353531;353532;353533;353534;353535;353536;353537;353538;353539;353540;353541;353542 215506;215507;215508;215509;215510;215511;215512;215513;215514;215515;215516;215517;215518;215519;215520;215521;215522;215523;215524 215516 19 SSGDPADQK Unmodified 903.39339 0.39338946 861 P0AEH5 elaB Protein ElaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.3478 6.2178 2 5.6712E-05 1097 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 147.29 147.29 1867500000 192900000 172510000 159210000 0 5328400 0 0 532330000 549600000 0 0 0 32584000 28101000 29951000 0 0 0 61064000 51124000 52788000 0 0 0 19033 861 18437 353543;353544;353545;353546;353547;353548;353549;353550;353551;353552;353553;353554;353555;353556 215525;215526;215527;215528;215529;215530;215531;215532;215533;215534;215535;215536;215537 215528 13 SSGDPADQKYVELK Unmodified 1535.7468 0.74675201 861 P0AEH5 elaB Protein ElaB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 18.505 18.665 2;3 3.2785E-19 5742 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 206.1 177.92 394030000 0 0 0 81764000 76107000 80765000 0 0 0 53391000 35778000 31548000 0 0 0 0 0 0 0 0 0 11413000 12567000 10699000 19034 861 18438 353557;353558;353559;353560;353561;353562;353563;353564;353565;353566;353567;353568;353569;353570;353571;353572;353573;353574 215538;215539;215540;215541;215542;215543;215544;215545;215546;215547;215548;215549;215550;215551;215552;215553 215541 15 SSIHSYR Unmodified 848.41407 0.41406533 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 10.011 10.822 2 0.02496 2545 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 72.138 72.138 1701700000 158460000 133750000 129550000 0 0 0 53854000 36599000 42887000 0 0 0 224700000 208510000 172850000 0 0 0 192250000 187610000 160720000 0 0 0 19035 299 18439 353575;353576;353577;353578;353579;353580;353581;353582;353583;353584;353585;353586;353587 215554;215555;215556;215557;215558;215559;215560 215557 7 SSILDATIFLADK Unmodified 1392.75 0.75004648 845 P0AEB7 yoaB RutC family protein YoaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.492 52.052 2 2.9579E-07 24508 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 151.15 121.67 755290000 77068000 76253000 66997000 0 0 0 77362000 86184000 76078000 0 0 0 50232000 39618000 43227000 0 0 0 53394000 55499000 53379000 0 0 0 19036 845 18440 353588;353589;353590;353591;353592;353593;353594;353595;353596;353597;353598;353599 215561;215562;215563;215564;215565;215566;215567;215568;215569;215570;215571;215572 215571 12 SSILDATIFLADKNDFAAMNK Unmodified 2284.1409 0.14093352 845 P0AEB7 yoaB RutC family protein YoaB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 52.859 51.492 2;3 1.7308E-62 25417 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 278.82 266.77 842510000 99139000 117610000 78603000 0 0 0 73920000 72929000 68418000 0 0 0 46214000 42913000 43726000 0 0 0 56520000 64081000 78430000 0 0 0 19037 845 18441 353600;353601;353602;353603;353604;353605;353606;353607;353608;353609;353610;353611;353612;353613;353614;353615;353616;353617;353618;353619;353620;353621;353622 215573;215574;215575;215576;215577;215578;215579;215580;215581;215582;215583;215584;215585;215586;215587;215588 215582 16 SSIMVGEVDATTASGIHGLADENEDIR Unmodified 2786.3029 0.30286648 1981 Q93K97 nudF ADP-ribose pyrophosphatase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.008 38.343 3 1.2857E-16 18642 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.69 141.89 209450000 16052000 16581000 15324000 0 0 0 23460000 17290000 19896000 0 0 0 16532000 14646000 11827000 0 0 0 20968000 16316000 20563000 0 0 0 19038 1981 18442 353623;353624;353625;353626;353627;353628;353629;353630;353631;353632;353633;353634 215589;215590;215591;215592;215593;215594;215595;215596;215597;215598 215592 10 SSIPVFGVDALPEALALVK Unmodified 1925.0874 0.087365029 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 55.467 53.995 2;3 1.4007E-05 26918 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.282 84.964 5496600000 1569500000 1284400000 1433600000 0 0 0 99360000 98892000 96851000 0 824260 0 128090000 122350000 128430000 0 0 0 191710000 185730000 156970000 0 0 0 19039 852 18443 353635;353636;353637;353638;353639;353640;353641;353642;353643;353644;353645;353646;353647;353648;353649;353650;353651;353652;353653;353654;353655;353656;353657;353658;353659 215599;215600;215601;215602;215603;215604;215605;215606;215607;215608 215602 4 SSITDCMIICTGTSSR Unmodified 1787.7852 0.78520448 612 P0AAT6 rsfS Ribosomal silencing factor RsfS yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 35.397 33.96 2 0.0058957 16200 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 59.898 53.665 199580000 22338000 10378000 17634000 0 0 0 0 48041000 0 0 0 0 37994000 31477000 31715000 0 0 0 0 0 0 0 0 0 19040 612 18444 353660;353661;353662;353663;353664;353665;353666 215609 215609 1 SSLAFDTLYAEGQR Unmodified 1556.7471 0.74708636 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 1 1 2 2 2 2 2 1 1 1 2 2 1 2 2 2 2 1 1 1 1 1 38.949 37.442 2;3 1.7833E-19 13831 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 207.29 199.91 385630000 36423000 27318000 4766900 526820 1922400 1633500 30709000 28182000 30099000 4678100 4483100 4741200 20029000 19416000 5591600 58234000 38529000 39010000 6867200 6038100 7040100 3389700 2306400 3695600 19041 222 18445 353667;353668;353669;353670;353671;353672;353673;353674;353675;353676;353677;353678;353679;353680;353681;353682;353683;353684;353685;353686;353687;353688;353689;353690;353691;353692;353693;353694;353695;353696;353697;353698;353699;353700;353701;353702;353703 215610;215611;215612;215613;215614;215615;215616;215617;215618;215619 215610 10 SSLAFDTLYAEGQRR Unmodified 1712.8482 0.84819739 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 31.985 30.75 3 2.3202E-06 9926 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 103.85 97.949 38114000 0 0 0 0 0 0 0 0 0 2038700 2110100 0 0 0 0 9199500 10222000 9958300 0 0 0 2769800 0 1815400 19042 222 18446 353704;353705;353706;353707;353708;353709;353710 215620;215621;215622 215621 3 SSLEAVVDTLDQMK Unmodified 1534.7549 0.75487386 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 1 1 2 2 2 51.092 49.921 2;3 4.8012E-35 24232 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 259.08 253.98 2549400000 210980000 186980000 205900000 1240000 1709200 1873400 186470000 190510000 185130000 0 0 0 229170000 245290000 241160000 1244600 1496000 0 220260000 220520000 219460000 0 0 0 19043 149 18447 353711;353712;353713;353714;353715;353716;353717;353718;353719;353720;353721;353722;353723;353724;353725;353726;353727;353728;353729;353730;353731;353732;353733;353734;353735;353736;353737;353738;353739;353740;353741 215623;215624;215625;215626;215627;215628;215629;215630;215631;215632;215633;215634;215635;215636;215637;215638;215639;215640;215641;215642;215643;215644;215645 215631 23 SSLGAVQNR Unmodified 930.48829 0.4882929 96 P04949 fliC Flagellin yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.388 12.272 2 0.00077017 2642 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 101.69 82.908 257390000 17379000 21009000 22234000 8740200 10117000 9647600 12986000 15019000 11482000 0 0 0 22453000 17744000 18932000 0 0 0 21497000 23336000 24810000 0 0 0 19044 96 18448 353742;353743;353744;353745;353746;353747;353748;353749;353750;353751;353752;353753;353754;353755;353756 215646;215647 215647 2 SSLIQALLK Unmodified 971.60153 0.60153174 1622 P60546 gmk Guanylate kinase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 44.804 43.299 2 0.00078595 20152 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 101.28 93.344 957820000 71486000 66393000 57334000 0 455360 0 90989000 92378000 97629000 0 0 0 76988000 61467000 73847000 0 0 0 99960000 91464000 77430000 0 0 0 19045 1622 18449 353757;353758;353759;353760;353761;353762;353763;353764;353765;353766;353767;353768;353769 215648;215649;215650;215651;215652;215653;215654;215655;215656;215657;215658 215657 11 SSLLLFNDK Unmodified 1035.5601 0.56006086 1549 P40191 pdxK Pyridoxine kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.325 35.584 2 0.00084741 17748 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 99.7 73.761 148260000 4517500 16041000 11202000 0 0 0 13144000 13532000 14279000 0 396310 0 10069000 9830300 10759000 0 0 0 11354000 17850000 15287000 0 0 0 19046 1549 18450 353770;353771;353772;353773;353774;353775;353776;353777;353778;353779;353780;353781;353782 215659;215660;215661 215659 3 SSLLNALAGR Unmodified 1000.5665 0.56654322 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 35.691 34.061 2 0.066315 16833 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 50.607 39.734 135750000 0 0 0 0 0 0 20825000 22737000 19683000 0 0 0 8580300 9573800 8692400 0 0 0 17369000 14452000 13840000 0 0 0 19047 1256 18451 353783;353784;353785;353786;353787;353788;353789;353790;353791 215662;215663 215662 0 SSLLNALLGLQK Unmodified 1255.75 0.7499869 1519 P39286 rsgA Putative ribosome biogenesis GTPase RsgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.974 52.534 2 7.3836E-05 25640 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.82 104.37 127590000 17035000 19547000 18762000 0 0 0 5839000 6175400 6017400 0 0 0 8430500 9466800 7713200 0 0 0 8670800 10509000 9422500 0 0 0 19048 1519 18452 353792;353793;353794;353795;353796;353797;353798;353799;353800;353801;353802;353803 215664;215665;215666;215667;215668;215669;215670;215671 215668 8 SSLNVLAPGGR Unmodified 1069.588 0.58800695 1619 P60390 rsmH Ribosomal RNA small subunit methyltransferase H yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.071 24.231 2 2.989E-05 10219 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 133.23 113.46 228200000 24273000 21295000 17845000 0 0 0 26437000 21464000 19063000 0 0 0 13614000 16878000 14646000 907070 690680 974460 16735000 15476000 17903000 0 0 0 19049 1619 18453 353804;353805;353806;353807;353808;353809;353810;353811;353812;353813;353814;353815;353816;353817;353818 215672;215673;215674;215675;215676;215677;215678;215679;215680;215681 215681 10 SSMFPDPWR Unmodified 1121.4964 0.49641475 1645 P62517 mdoH Glucans biosynthesis glucosyltransferase H yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 41.998 40.073 2 0.028573 19408 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 60.436 56.08 50864000 0 3352800 0 0 0 0 4673300 3981200 4833700 1284000 1503000 827520 4099800 4351000 5266600 0 0 0 6139800 5558200 4992800 0 0 0 19050 1645 18454 353819;353820;353821;353822;353823;353824;353825;353826;353827;353828;353829;353830;353831 215682 215682 1 SSMLEVLGEDYIR Unmodified 1510.7337 0.73374448 855 P0AEF8 dppB Dipeptide transport system permease protein DppB yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 50.457 49.158 2 0.012185 17734 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 58.676 47.357 17180000 8219300 0 0 4805900 0 4154500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19051 855 18455 353832;353833;353834 215683 215683 1 SSMLGTSLVLPVHK Unmodified 1467.8119 0.81193523 910 P0AF48 yjbQ UPF0047 protein YjbQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 36.082 34.429 2;3 0.0016312 16338 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 64.104 64.104 129030000 25274000 28688000 24795000 945480 930520 1131200 11276000 8193700 10869000 727420 0 1296800 0 2638800 3444900 0 0 0 0 4500400 4320200 0 0 0 19052 910 18456 353835;353836;353837;353838;353839;353840;353841;353842;353843;353844;353845;353846;353847;353848;353849;353850;353851;353852 215684;215685;215686;215687;215688;215689 215689 6 SSMTTTDNK Unmodified 983.42298 0.42297503 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.698 6.5639 2 3.5972E-05 1331 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.63 152.63 121650000 7730500 7628500 9387800 0 0 0 15705000 15778000 14227000 0 0 0 9630600 7884200 8523200 0 0 0 8891800 8254700 8006900 0 0 0 19053 122 18457 353853;353854;353855;353856;353857;353858;353859;353860;353861;353862;353863;353864 215690;215691;215692;215693;215694;215695;215696;215697 215690 8 SSNFADGIEDDNWEEQAANR Unmodified 2266.9363 0.93629671 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 37.041 37.164 2;3 3.3576E-37 12788 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 291.51 291.51 205740000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99315000 52363000 54061000 0 0 0 0 0 0 19054 1004 18458 353865;353866;353867;353868;353869;353870 215698;215699;215700;215701;215702;215703 215702 6 SSNTASVVVLCTAPDEATAQDLAAK Unmodified 2518.2221 0.22209696 1735 P69488 cutA Divalent-cation tolerance protein CutA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 1 1 1 1 1 2 39.378 37.683 2;3 3.1415E-40 18182 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 204.05 199.66 147600000 28975000 28315000 26178000 0 0 0 13564000 10166000 6671000 0 0 0 3234000 7333800 7914200 0 0 0 5589400 9661700 0 0 0 0 19055 1735 18459 353871;353872;353873;353874;353875;353876;353877;353878;353879;353880;353881;353882;353883;353884;353885;353886;353887 215704;215705;215706;215707 215707 4 SSNTETFVAIR Unmodified 1223.6146 0.61461563 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.117 24.925 2 1.8661E-10 11183 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 193.38 184.53 2138900000 159710000 153020000 135340000 953550 685320 622100 230190000 196190000 190420000 0 0 1536000 169500000 155950000 161600000 0 0 0 195060000 203180000 184100000 0 0 793340 19056 702 18460 353888;353889;353890;353891;353892;353893;353894;353895;353896;353897;353898;353899;353900;353901;353902;353903;353904 215708;215709;215710;215711;215712;215713;215714;215715;215716;215717;215718;215719 215714 12 SSNTFTLGTK Unmodified 1054.5295 0.52948901 1278 P25906 ydbC Putative oxidoreductase YdbC yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.708 20.108 2 0.058836 8085 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 46.819 45.354 203520000 38247000 35944000 31585000 0 0 0 14915000 14856000 14723000 0 0 0 8782400 7697100 4733200 0 0 0 9903700 9685300 8462700 1993600 0 1989600 19057 1278 18461 353905;353906;353907;353908;353909;353910;353911;353912;353913;353914;353915;353916;353917;353918 215720;215721 215720 2 SSPGYFFDVQNR Unmodified 1415.647 0.64697839 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 37.299 35.122 2 0.00011302 13906 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 90.827 90.827 186880000 0 0 0 0 0 0 57527000 54208000 56151000 5189000 4876000 3670600 5256300 0 0 0 0 0 0 0 0 0 0 0 19058 722 18462 353919;353920;353921;353922;353923;353924;353925;353926 215722;215723;215724;215725;215726;215727 215723 6 SSPHLELLR Unmodified 1050.5822 0.58219329 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 1 2 3 2 2 1 2 2 2 2 2 2 1 1 3 2 2 1 1 21.884 21.759 2;3 0.00028804 8782 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.89 114.54 3571400000 384400000 364550000 248700000 3934000 3004000 3513400 308790000 293260000 268790000 3761200 4833000 5161200 272980000 250240000 217130000 2991400 3264400 1952100 333360000 307060000 286200000 2075000 1415900 0 19059 295 18463 353927;353928;353929;353930;353931;353932;353933;353934;353935;353936;353937;353938;353939;353940;353941;353942;353943;353944;353945;353946;353947;353948;353949;353950;353951;353952;353953;353954;353955;353956;353957;353958;353959;353960;353961;353962;353963;353964;353965;353966;353967;353968;353969 215728;215729;215730;215731;215732;215733;215734;215735;215736;215737;215738;215739;215740;215741;215742;215743;215744;215745;215746;215747;215748;215749;215750;215751;215752 215745 25 SSPLDVSVYEPK Unmodified 1319.6609 0.66089712 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 35.072 33.596 2 0.01579 15459 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 58.676 53.195 250100000 0 0 0 0 0 0 42642000 45484000 45405000 0 2983600 0 17976000 16210000 21698000 2255200 0 0 0 25225000 30222000 0 0 0 19060 154 18464 353970;353971;353972;353973;353974;353975;353976;353977;353978;353979 215753 215753 1 SSQTPWTLDPVAVGALDYR Unmodified 2075.0324 0.032369346 1860 P76423 thiM Hydroxyethylthiazole kinase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 52.599 51.337 2 1.9426E-09 24999 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.13 148.85 89117000 0 0 0 0 0 0 8033400 7189400 9661400 0 0 0 7690300 7699600 6784300 0 0 0 14075000 13547000 14436000 0 0 0 19061 1860 18465 353980;353981;353982;353983;353984;353985;353986;353987;353988 215754;215755 215755 2 SSSCIEEVSVPDDNWYR Unmodified 2041.8687 0.86873442 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 1 2 1 2 2 1 2 1 1 1 1 40.199 38.197 2;3 2.7331E-75 18851 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 329.15 329.15 178920000 0 0 0 0 0 0 45191000 37486000 46992000 3759400 4480300 3638700 4882200 7051900 4897800 0 0 0 7330700 7324600 5887100 0 0 0 19062 522 18466 353989;353990;353991;353992;353993;353994;353995;353996;353997;353998;353999;354000;354001;354002;354003;354004;354005 215756;215757;215758;215759 215758 4 SSSCIEEVSVPDDNWYR Acetyl (Protein N-term) 2083.8793 0.8792991 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 1 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 50.439 48.988 2 6.4378E-50 24234 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 276.95 271.67 61065000 4075500 0 0 0 0 0 16597000 14760000 10711000 0 0 0 2673200 0 3522700 0 0 0 3494200 2577300 2654100 0 0 0 19063 522 18466 354006;354007;354008;354009;354010;354011;354012;354013;354014 215760;215761;215762 215760 3 SSSGSSSSYGQHGSGSR Unmodified 1613.6666 0.66660421 23 CON__Q86YZ3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 1 10.178 10.334 2;3 9.3859E-05 1840 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 87.148 85.876 13475000 0 0 0 0 0 0 0 0 0 2448500 6744900 4281800 0 0 0 0 0 0 0 0 0 0 0 0 + 19064 23 18467 354015;354016;354017;354018;354019 215763;215764;215765;215766;215767;215768 215765 6 SSSSGSVGESSSK Unmodified 1184.5157 0.51568944 13 CON__P13645 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 10.082 10.357 2 9.8111E-06 1797 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 120.06 117.64 63858000 0 272880 0 0 0 0 0 0 0 2866800 2534500 2528000 0 156820 0 0 1878600 2131000 0 0 0 18195000 15505000 17789000 + 19065 13 18468 354020;354021;354022;354023;354024;354025;354026;354027;354028;354029 215769;215770;215771 215771 3 SSSSLLPELSAEANPFR Unmodified 1803.9003 0.90029254 814 P0ADW3 yhcB Inner membrane protein YhcB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 1 1 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 50.071 48.636 2;3 9.634E-11 23582 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 173.72 170.1 1307600000 30852000 26300000 27406000 9182400 7920600 1738800 139530000 132370000 134880000 34737000 38856000 31612000 109390000 99712000 105010000 0 0 0 117900000 111410000 114820000 12591000 10557000 10792000 19066 814 18469 354030;354031;354032;354033;354034;354035;354036;354037;354038;354039;354040;354041;354042;354043;354044;354045;354046;354047;354048;354049;354050;354051;354052;354053;354054;354055;354056;354057;354058;354059;354060;354061;354062;354063 215772;215773;215774;215775;215776;215777;215778;215779;215780;215781;215782;215783;215784;215785;215786;215787 215783 16 SSSVETMPDLPLK Unmodified 1402.7014 0.70138172 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.488 34.948 2 7.5263E-07 14023 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 140.78 138.51 742640000 0 0 0 15282000 15572000 15938000 136950000 0 0 32619000 27722000 30260000 125930000 119280000 121810000 13350000 6494200 7798700 0 1662300 0 20290000 23901000 27791000 19067 1210 18470 354064;354065;354066;354067;354068;354069;354070;354071;354072;354073;354074;354075;354076;354077;354078;354079;354080 215788;215789;215790;215791;215792;215793;215794;215795;215796;215797;215798;215799;215800;215801;215802 215791 13 SSTAVNLALALAAEGAK Unmodified 1585.8675 0.86753585 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 1 49.594 48.263 2;3 1.0187E-10 23865 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 140.8 137.56 1708800000 153060000 146300000 133920000 3777600 4724400 7222500 58264000 147070000 163170000 14044000 14973000 15599000 146370000 129360000 129070000 0 3622000 3125600 133130000 143470000 142060000 7154100 5776500 3491500 19068 902 18471 354081;354082;354083;354084;354085;354086;354087;354088;354089;354090;354091;354092;354093;354094;354095;354096;354097;354098;354099;354100;354101;354102;354103;354104;354105;354106;354107;354108;354109;354110;354111;354112;354113;354114;354115;354116;354117;354118;354119;354120;354121 215803;215804;215805;215806;215807;215808;215809;215810;215811;215812;215813;215814;215815;215816;215817;215818;215819;215820;215821;215822;215823;215824;215825;215826;215827;215828;215829;215830;215831;215832;215833;215834;215835;215836 215812 32 SSTNIEQVMPVK Unmodified 1331.6755 0.67550132 1198 P22524 mukE Chromosome partition protein MukE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 27.875 26.72 2 2.7217E-06 12016 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.05 128.9 365540000 33593000 27758000 23883000 0 0 0 27973000 29097000 25486000 0 0 0 28321000 24007000 22458000 0 0 0 47212000 44785000 30972000 0 0 0 19069 1198 18472 354122;354123;354124;354125;354126;354127;354128;354129;354130;354131;354132;354133;354134 215837;215838;215839;215840;215841;215842;215843;215844 215841 8 SSVDILVPDLPESVADATVATWHK Unmodified 2549.3013 0.30133356 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 1 2 1 1 1 1 3 3 3 1 1 1 3 3 3 1 1 2 53.98 52.67 2;3;4 5.3032E-30 25774 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 237.59 233.2 10221000000 1065800000 1014400000 979660000 13322000 11728000 15080000 32892000 383730000 32818000 12130000 11669000 12678000 830740000 693080000 731700000 10523000 9791000 8966000 1407700000 1439800000 1371700000 39107000 50146000 42077000 19070 938 18473 354135;354136;354137;354138;354139;354140;354141;354142;354143;354144;354145;354146;354147;354148;354149;354150;354151;354152;354153;354154;354155;354156;354157;354158;354159;354160;354161;354162;354163;354164;354165;354166;354167;354168;354169;354170;354171;354172;354173;354174;354175;354176;354177;354178 215845;215846;215847;215848;215849;215850;215851;215852;215853;215854;215855;215856;215857;215858;215859;215860;215861;215862;215863;215864;215865;215866;215867;215868;215869;215870;215871;215872;215873;215874;215875 215854 31 SSVGFLIVR Unmodified 976.57057 0.57056597 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.996 36.137 2 0.00026825 16677 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 120.62 108.26 480740000 18372000 22810000 16570000 9105000 7080800 7792400 41388000 35609000 39530000 18716000 15504000 14802000 25881000 24583000 20292000 0 0 0 48453000 43378000 42569000 9348300 9715200 9238300 19071 819 18474 354179;354180;354181;354182;354183;354184;354185;354186;354187;354188;354189;354190;354191;354192;354193;354194;354195;354196;354197;354198;354199 215876;215877;215878;215879;215880;215881;215882;215883;215884;215885;215886;215887;215888;215889 215888 14 SSVGHIR Unmodified 754.40859 0.40858602 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 8.9592 9.7947 2 0.001213 2474 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 133.99 124.24 362160000 64229000 0 51233000 0 0 0 14673000 12191000 12330000 0 0 0 17558000 21362000 13149000 0 0 0 53061000 47033000 55344000 0 0 0 19072 124 18475 354200;354201;354202;354203;354204;354205;354206;354207;354208;354209;354210 215890;215891;215892;215893;215894;215895;215896;215897;215898 215895 9 SSVVNNPTGR Unmodified 1029.5203 0.52032131 1719 P68191 sra Stationary-phase-induced ribosome-associated protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.965 12.781 2 1.1292E-06 3496 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 168.27 145.48 2101400000 401900000 415650000 392700000 3977500 2901000 3730600 201710000 182750000 169830000 0 0 0 59212000 60358000 49172000 0 0 0 49129000 51786000 53223000 0 2028500 1394100 19073 1719 18476 354211;354212;354213;354214;354215;354216;354217;354218;354219;354220;354221;354222;354223;354224;354225;354226;354227 215899;215900;215901;215902;215903;215904;215905;215906 215905 7 SSYANHQALAGLTLGK Unmodified 1629.8475 0.84746911 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.928 24.822 2;3 1.6373E-13 11270 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.58 115.37 449170000 35638000 37118000 37672000 0 0 0 35764000 43969000 40808000 0 0 0 32356000 28662000 28123000 0 0 0 47851000 38029000 43180000 0 0 0 19074 1966 18477 354228;354229;354230;354231;354232;354233;354234;354235;354236;354237;354238;354239;354240;354241;354242;354243;354244;354245;354246;354247;354248;354249;354250;354251 215907;215908;215909;215910;215911;215912;215913;215914 215911 8 SSYHADLQAK Unmodified 1118.5356 0.53563702 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 2 2 11.669 12.302 2;3 3.9403E-05 2657 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 164.68 164.68 2058500000 75114000 108400000 107270000 61564000 67603000 22711000 129630000 145700000 138350000 5486800 2419200 6123600 132400000 122220000 110240000 6479500 5090500 5340600 209730000 190010000 200170000 82905000 65147000 58358000 19075 1628 18478 354252;354253;354254;354255;354256;354257;354258;354259;354260;354261;354262;354263;354264;354265;354266;354267;354268;354269;354270;354271;354272;354273;354274;354275;354276;354277;354278;354279;354280;354281;354282;354283;354284;354285;354286;354287;354288;354289;354290;354291;354292;354293;354294;354295;354296 215915;215916;215917;215918;215919;215920;215921;215922;215923;215924;215925;215926;215927;215928;215929;215930;215931;215932;215933;215934;215935;215936;215937;215938;215939;215940;215941 215922 27 SSYLDYAMSVIVGR Unmodified 1559.7654 0.76537896 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 1 1 1 1 2 2 2 2 2 2 2 2 1 1 55.033 53.567 2;3 7.6203E-24 25557 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 243.82 231.89 460360000 17329000 18341000 18592000 1907100 0 693580 108700000 20355000 14896000 11421000 7558500 26402000 39114000 26476000 28512000 0 0 0 32222000 40947000 33065000 7106100 2638200 4088300 19076 882 18479 354297;354298;354299;354300;354301;354302;354303;354304;354305;354306;354307;354308;354309;354310;354311;354312;354313;354314;354315;354316;354317;354318;354319;354320;354321;354322;354323;354324;354325;354326;354327;354328 215942;215943;215944;215945;215946;215947;215948;215949;215950;215951;215952;215953;215954;215955;215956;215957 215953 16 SSYNPDGNPLTIGEDVTVGHK Unmodified 2199.0444 0.044390595 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.882 33.425 3 1.3931E-10 15308 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 126.22 125.51 736280000 72993000 68217000 60659000 0 0 0 68025000 63245000 63763000 0 0 0 56395000 50553000 46499000 0 0 0 61978000 59881000 64069000 0 0 0 19077 563 18480 354329;354330;354331;354332;354333;354334;354335;354336;354337;354338;354339;354340 215958;215959;215960;215961;215962;215963;215964;215965;215966 215965 9 STADVALIAR Unmodified 1015.5662 0.56620887 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 25.586 24.466 2 0.029045 10619 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.074 42.688 27584000 3955600 20660000 0 0 0 0 2969300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19078 1937 18481 354341;354342;354343 215967 215967 0 STAESIVYSALETLAQR Unmodified 1837.9422 0.94215736 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 3 2 2 2 3 2 3 2 2 2 2 2 2 1 2 2 3 3 2 1 2 2 55.369 54.01 2;3 1.8348E-25 20864 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 228.78 205.87 5379200000 739480000 716300000 664790000 26502000 29486000 23843000 223290000 204150000 183160000 57041000 67050000 57758000 322390000 277540000 275580000 41530000 64807000 65867000 461350000 408270000 398040000 19932000 27723000 23325000 19079 67 18482 354344;354345;354346;354347;354348;354349;354350;354351;354352;354353;354354;354355;354356;354357;354358;354359;354360;354361;354362;354363;354364;354365;354366;354367;354368;354369;354370;354371;354372;354373;354374;354375;354376;354377;354378;354379;354380;354381;354382;354383;354384;354385;354386;354387;354388;354389;354390;354391;354392;354393;354394;354395 215968;215969;215970;215971;215972;215973;215974;215975;215976;215977;215978;215979;215980;215981;215982;215983;215984;215985;215986;215987;215988;215989;215990;215991;215992;215993;215994;215995;215996;215997;215998;215999;216000;216001;216002 215972 35 STAGYFVANGMPVRAK Unmodified 1667.8454 0.84536062 1140 P17444 betA Oxygen-dependent choline dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 16.547 17.24 4 0.16661 6282 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 11.279 7.0366 65143000 0 0 0 0 0 0 17581000 20104000 18593000 0 0 0 0 4650400 0 0 0 0 4215300 0 0 0 0 0 19080 1140 18483 354396;354397;354398;354399;354400 216003;216004 216004 2 STALLQSSYNYQER Unmodified 1658.79 0.79001381 1206 P23331 tdk Thymidine kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 27.297 26.128 2 3.3933E-11 11988 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 199.49 190.3 266520000 24707000 0 20470000 0 0 0 23224000 21772000 24540000 0 0 0 22485000 27617000 21850000 0 0 0 27662000 27159000 25035000 0 0 0 19081 1206 18484 354401;354402;354403;354404;354405;354406;354407;354408;354409;354410;354411 216005 216005 1 STANQKPTESVSLNAFK Unmodified 1820.9268 0.92684164 1894 P77304 dtpA Dipeptide and tripeptide permease A yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 22.291 21.858 3 7.5775E-05 9296 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 59.9 57.003 100330000 11299000 8734100 6793000 0 0 0 0 0 0 0 0 0 9150300 7924800 8199300 0 0 0 15932000 15345000 16952000 0 0 0 19082 1894 18485 354412;354413;354414;354415;354416;354417;354418;354419;354420 216006;216007 216006 2 STAVFNMFK Unmodified 1043.511 0.51100218 631 P0AB61 yciN Protein YciN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.926 36.079 2 0.00034767 17781 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 113.7 113.7 763200000 96899000 90472000 83791000 2492700 2397800 1911200 0 86286000 88305000 8179700 6631500 6541200 61180000 60689000 53436000 0 0 0 58191000 54420000 0 1381000 0 0 19083 631 18486 354421;354422;354423;354424;354425;354426;354427;354428;354429;354430;354431;354432;354433;354434;354435;354436;354437;354438 216008;216009;216010;216011;216012;216013;216014;216015;216016;216017;216018 216011 11 STCTGVEMFR Unmodified 1186.5111 0.51107853 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.191 24.197 2 8.512E-09 10919 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 185.84 185.84 71375000000 5295700000 5418200000 4937600000 45417000 47604000 48357000 5733100000 5869400000 5552900000 28671000 31456000 33208000 6263800000 6209100000 5371200000 27283000 17929000 19569000 6261000000 7056200000 7029400000 29290000 24388000 23944000 19084 1048 18487 354439;354440;354441;354442;354443;354444;354445;354446;354447;354448;354449;354450;354451;354452;354453;354454;354455;354456;354457;354458;354459;354460;354461;354462;354463;354464;354465 216019;216020;216021;216022;216023;216024;216025;216026;216027;216028;216029;216030;216031;216032;216033;216034;216035;216036;216037;216038;216039;216040;216041;216042;216043;216044;216045;216046;216047;216048;216049;216050;216051;216052;216053;216054;216055;216056;216057;216058;216059;216060;216061;216062;216063;216064;216065;216066;216067;216068;216069 216028 51 STCTGVEMFR Oxidation (M) 1202.506 0.50599315 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 6 8 7 2 3 2 7 7 7 1 1 8 7 7 8 8 6 1 2 2 20.405 20.45 2 0.00037727 6540 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 112.41 111.15 4043300000 238240000 249590000 210570000 2389300 2839200 2276000 474980000 419220000 399340000 644410 0 906600 374110000 330380000 319750000 0 0 0 342100000 356730000 316010000 803690 1288700 1129300 19085 1048 18487 354466;354467;354468;354469;354470;354471;354472;354473;354474;354475;354476;354477;354478;354479;354480;354481;354482;354483;354484;354485;354486;354487;354488;354489;354490;354491;354492;354493;354494;354495;354496;354497;354498;354499;354500;354501;354502;354503;354504;354505;354506;354507;354508;354509;354510;354511;354512;354513;354514;354515;354516;354517;354518;354519;354520;354521;354522;354523;354524;354525;354526;354527;354528;354529;354530;354531;354532;354533;354534;354535;354536;354537;354538;354539;354540;354541;354542;354543;354544;354545;354546;354547;354548;354549;354550;354551;354552;354553;354554;354555;354556;354557;354558;354559;354560;354561;354562;354563;354564;354565 216070;216071;216072;216073;216074;216075;216076;216077;216078;216079;216080;216081;216082;216083;216084;216085;216086;216087;216088;216089;216090;216091;216092;216093;216094;216095;216096;216097;216098;216099;216100;216101;216102;216103;216104;216105;216106;216107;216108;216109;216110;216111;216112;216113;216114;216115;216116;216117;216118;216119;216120;216121;216122;216123;216124;216125;216126;216127;216128;216129;216130;216131;216132;216133;216134;216135;216136;216137;216138;216139;216140;216141;216142;216143;216144;216145;216146 216077 475 75 STCTGVEMFRK Unmodified 1314.606 0.60604155 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 17.129 17.634 2;3 0.00019963 4681 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 91.549 91.549 1265600000 89223000 80668000 67437000 39112000 24999000 22990000 84899000 92820000 87252000 31948000 21384000 22191000 60073000 55704000 57246000 26119000 18019000 20324000 103540000 102460000 95016000 23564000 15323000 23310000 19086 1048 18488 354566;354567;354568;354569;354570;354571;354572;354573;354574;354575;354576;354577;354578;354579;354580;354581;354582;354583;354584;354585;354586;354587;354588;354589;354590;354591;354592;354593;354594;354595;354596;354597;354598;354599;354600;354601;354602;354603;354604;354605;354606;354607;354608;354609;354610;354611;354612 216147;216148;216149;216150;216151;216152;216153;216154;216155;216156;216157;216158;216159;216160;216161;216162;216163;216164;216165 216161 19 STDISVK Unmodified 748.39668 0.39668393 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.199 12.884 2 0.00085673 3595 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.02 129.03 7705000000 1946000000 1818000000 1684700000 0 0 0 459960000 466980000 441610000 0 4215000 1611700 0 0 0 0 0 0 298110000 302650000 281160000 0 0 0 19087 943 18489 354613;354614;354615;354616;354617;354618;354619;354620;354621;354622;354623 216166;216167;216168 216167 3 STDNLPLR Unmodified 914.48214 0.48214489 1857 P76407 yegS Lipid kinase YegS yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 18.612 19.075 2 0.0070607 7432 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.033 80.986 180510000 19277000 22127000 20633000 0 564500 940390 22692000 18580000 18466000 1975100 1843400 1946200 8415500 7248100 7561800 0 0 0 8931800 9302600 9999400 0 0 0 19088 1857 18490 354624;354625;354626;354627;354628;354629;354630;354631;354632;354633;354634;354635;354636;354637;354638;354639;354640;354641;354642;354643 216169;216170;216171 216170 0 STEDQFFMYLR Unmodified 1435.6442 0.6442012 1113 P15723 dgt Deoxyguanosinetriphosphate triphosphohydrolase yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 49.16 47.755 2 0.0017595 23620 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.827 73.848 21052000 6175500 5867800 4851600 0 0 0 0 0 4156600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19089 1113 18491 354644;354645;354646;354647 216172 216172 1 STEIKTQVVVLGAGPAGYSAAFR Unmodified 2321.2379 0.23794545 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 39.875 38.156 3 0.00024296 13438 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 67.979 66.876 10090000 0 0 0 2813200 3350900 3925900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19090 542 18492 354648;354649;354650 216173;216174;216175 216173 3 STFISSVK Unmodified 867.47018 0.47018322 83 P03841 malM Maltose operon periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.036 19.375 2 0.0033112 5839 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 93.195 85.484 2092600000 141680000 140390000 110310000 8511600 6283700 6852200 0 266840000 0 22449000 24719000 22386000 214690000 184690000 173730000 0 5349100 6194700 361790000 363440000 0 11173000 9350500 11800000 19091 83 18493 354651;354652;354653;354654;354655;354656;354657;354658;354659;354660;354661;354662;354663;354664;354665;354666;354667;354668;354669;354670;354671;354672;354673 216176;216177;216178;216179;216180;216181;216182;216183;216184;216185;216186;216187;216188;216189;216190;216191;216192;216193;216194;216195;216196 216184 21 STFLLDSLGK Unmodified 1079.5863 0.58627561 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.836 39.987 2 0.0011886 18666 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 86.205 70.543 786020000 86436000 86677000 89548000 1168800 1036300 1023800 63611000 54062000 53289000 2240800 1844400 1790300 54410000 57523000 51536000 0 0 0 58558000 56608000 64660000 0 0 0 19092 948 18494 354674;354675;354676;354677;354678;354679;354680;354681;354682;354683;354684;354685;354686;354687;354688;354689;354690;354691 216197;216198;216199;216200;216201;216202;216203;216204;216205;216206;216207;216208 216207 12 STFQQLPGTGVKPDQFHSQTR Unmodified 2358.1717 0.17165679 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 2 2 2 2 3 3 3 2 1 1 3 3 3 2 2 2 24.146 23.22 2;3;4 3.229E-35 10188 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 247.29 230.08 4879900000 385450000 426510000 438240000 14307000 17513000 12816000 245980000 268240000 210610000 15472000 16909000 15103000 285260000 312670000 326510000 13787000 5875500 7929700 564570000 582540000 564210000 51285000 49100000 48972000 19093 937 18495 354692;354693;354694;354695;354696;354697;354698;354699;354700;354701;354702;354703;354704;354705;354706;354707;354708;354709;354710;354711;354712;354713;354714;354715;354716;354717;354718;354719;354720;354721;354722;354723;354724;354725;354726;354727;354728;354729;354730;354731;354732;354733;354734;354735;354736;354737;354738;354739;354740;354741;354742;354743;354744;354745;354746;354747;354748 216209;216210;216211;216212;216213;216214;216215;216216;216217;216218;216219;216220;216221;216222;216223;216224;216225;216226;216227;216228;216229;216230;216231;216232;216233;216234;216235;216236;216237;216238;216239;216240;216241;216242;216243;216244;216245;216246;216247;216248;216249;216250;216251;216252;216253;216254;216255 216230 47 STGEAMELMEQLASK Unmodified 1623.7484 0.74840827 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 2 1 2 2 1 2 2 2 2 2 2 2 2 48.523 47.108 2;3 3.1656E-09 22739 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 184.58 176.67 262830000 3279100 10615000 11333000 3774300 3511500 3015000 16730000 11339000 18079000 3987000 4005600 9203100 13433000 19861000 18784000 0 0 0 28626000 28790000 30343000 7892000 8456100 7777700 19094 1365 18496 354749;354750;354751;354752;354753;354754;354755;354756;354757;354758;354759;354760;354761;354762;354763;354764;354765;354766;354767;354768;354769;354770;354771;354772;354773;354774;354775;354776;354777;354778;354779;354780;354781;354782;354783;354784;354785;354786 216256;216257;216258;216259;216260;216261;216262;216263;216264;216265;216266;216267;216268;216269;216270;216271;216272;216273;216274 216268 19 STGEVMGVGR Unmodified 991.47568 0.4756793 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.691 16.355 2 8.3876E-09 5578 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 186.09 166.6 1025000000 217140000 201640000 184940000 1381000 452910 932640 3087100 3361400 3190100 0 0 0 27259000 25872000 24100000 0 1025000 1080000 113980000 105340000 97346000 4766500 4341000 3783500 19095 65 18497 354787;354788;354789;354790;354791;354792;354793;354794;354795;354796;354797;354798;354799;354800;354801;354802;354803;354804;354805;354806 216275;216276;216277;216278;216279;216280;216281 216276 6 STGHAGGIHNWR Unmodified 1291.617 0.61701566 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 1 2 2 2 2 1 10.942 11.783 2;3 1.3112E-05 2952 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 92.866 92.626 513920000 21904000 24220000 27880000 0 1145100 0 54201000 60023000 56549000 0 0 0 32318000 44874000 41192000 0 0 0 57757000 61165000 30699000 0 0 0 19096 948 18498 354807;354808;354809;354810;354811;354812;354813;354814;354815;354816;354817;354818;354819;354820;354821;354822;354823;354824;354825;354826 216282;216283;216284;216285;216286;216287;216288;216289;216290;216291;216292 216289 11 STGIADTVLFGPEPEFFLFDDIR Unmodified 2585.269 0.2689708 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.853 54.38 3 0.011962 26985 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 42.041 39.317 130180000 15135000 13877000 18129000 0 0 0 5505100 4873400 6490600 0 0 0 9611300 11600000 11219000 0 0 0 10384000 11787000 11568000 0 0 0 19097 508 18499 354827;354828;354829;354830;354831;354832;354833;354834;354835;354836;354837;354838 216293;216294 216293 0 STGSYSLVTQQPLGGK Unmodified 1621.8312 0.83115034 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 3 4 2 2 2 6 6 6 2 2 2 4 4 2 29.139 27.976 2;3;4 1.2168E-23 13128 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 253.76 252.86 51760000000 389910000 343960000 345070000 22606000 24486000 25318000 305710000 312710000 301490000 2788400000 3134300000 2910500000 321050000 331320000 307380000 11102000000 7866200000 7502200000 380120000 384700000 370740000 4070700000 4177700000 4041200000 19098 463 18500 354839;354840;354841;354842;354843;354844;354845;354846;354847;354848;354849;354850;354851;354852;354853;354854;354855;354856;354857;354858;354859;354860;354861;354862;354863;354864;354865;354866;354867;354868;354869;354870;354871;354872;354873;354874;354875;354876;354877;354878;354879;354880;354881;354882;354883;354884;354885;354886;354887;354888;354889;354890;354891;354892;354893;354894;354895;354896;354897;354898;354899;354900;354901;354902;354903;354904;354905;354906 216295;216296;216297;216298;216299;216300;216301;216302;216303;216304;216305;216306;216307;216308;216309;216310;216311;216312;216313;216314;216315;216316;216317;216318;216319;216320;216321;216322;216323;216324;216325;216326;216327;216328;216329;216330;216331;216332;216333;216334;216335;216336;216337;216338;216339;216340;216341;216342;216343;216344;216345;216346;216347;216348;216349;216350;216351;216352;216353;216354;216355;216356;216357;216358;216359;216360;216361;216362 216329 67 STGVEASIQVK Unmodified 1117.5979 0.59790293 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS 1 19.077 19.781 2 0.0010786 7462 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 82.749 67.599 8192600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8192600 0 0 0 0 19099 294 18501 354907 216363 216363 1 STGVEASIQVKPSYGLTDSEIASMIK Unmodified 2710.3735 0.37351223 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.52 43.909 3 2.3998E-22 21459 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 167.1 164.88 341910000 18551000 16240000 12966000 0 1603900 0 31190000 38471000 31243000 6682300 6427400 4804800 22990000 24671000 18683000 0 0 0 41409000 36235000 29743000 0 0 0 19100 294 18502 354908;354909;354910;354911;354912;354913;354914;354915;354916;354917;354918;354919;354920;354921;354922;354923 216364;216365;216366;216367;216368;216369;216370;216371;216372;216373;216374;216375;216376 216368 13 STHGVNCTGSCSWK Unmodified 1579.6508 0.65075991 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 12.141 12.783 2;3 5.4626E-08 3537 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 142.97 136.73 541510000 17855000 16260000 14166000 7781100 7170700 8042800 35147000 37880000 36708000 31011000 22867000 25158000 33073000 23993000 30121000 6010300 4744300 4356200 44975000 39555000 36840000 20744000 19841000 17215000 19101 205;1157 18503 354924;354925;354926;354927;354928;354929;354930;354931;354932;354933;354934;354935;354936;354937;354938;354939;354940;354941;354942;354943;354944;354945;354946;354947;354948;354949;354950;354951;354952;354953;354954;354955;354956;354957;354958;354959;354960;354961;354962;354963;354964;354965;354966;354967;354968;354969 216377;216378;216379;216380;216381;216382;216383;216384;216385;216386;216387;216388;216389;216390;216391 216385 15 STHHYTDSVGGILR Unmodified 1541.7587 0.7586541 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 1 1 1 1 2 2 1 2 2 2 1 2 1 18.586 19.012 3 5.0131E-06 5335 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 106.32 101.04 298420000 13082000 15411000 12756000 3151500 2379200 2903700 23635000 25718000 24761000 9540700 7497800 8776000 12219000 16958000 17064000 0 2280100 0 23309000 31572000 26350000 6538600 6931800 5582500 19102 1365 18504 354970;354971;354972;354973;354974;354975;354976;354977;354978;354979;354980;354981;354982;354983;354984;354985;354986;354987;354988;354989;354990;354991;354992;354993;354994;354995;354996;354997;354998;354999;355000;355001;355002 216392;216393;216394;216395;216396;216397;216398;216399;216400;216401;216402;216403;216404 216394 12 STIASLITR Unmodified 960.5604 0.56039521 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.036 29.642 2 0.00022968 14251 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 123.98 101.85 276830000 11894000 10814000 8381500 3380800 3478700 2987500 19808000 17870000 16514000 7772200 5628400 7594100 19773000 20179000 21944000 2629700 1500900 2010200 24184000 25800000 23877000 7232200 5415000 6165000 19103 1631 18505 355003;355004;355005;355006;355007;355008;355009;355010;355011;355012;355013;355014;355015;355016;355017;355018;355019;355020;355021;355022;355023;355024;355025;355026 216405;216406;216407;216408;216409;216410;216411;216412;216413;216414;216415;216416;216417;216418;216419;216420 216410 16 STIEDMAR Unmodified 921.42258 0.4225811 41 P00811 ampC Beta-lactamase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 17.361 18.027 2 0.045589 6475 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 60.709 51.695 83172000 9633700 11093000 9339200 0 0 0 6206800 6603100 6242200 0 0 0 0 5966600 4312700 0 0 0 8063700 7839900 7871100 0 0 0 19104 41 18506 355027;355028;355029;355030;355031;355032;355033;355034;355035;355036;355037 216421;216422 216422 1 STIEERVKK Acetyl (Protein N-term) 1130.6295 0.62953741 226 P0A6A8 acpP Acyl carrier protein yes yes 1 0 2 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 31.364 30.067 2 0.0038585 9874 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 72.138 57.981 110360000 0 0 0 0 0 0 0 0 0 0 10355000 0 0 0 0 29353000 0 52521000 0 0 0 5053200 6174500 6901800 19105 226 18507 355038;355039;355040;355041;355042;355043;355044 216423;216424 216424 2 STIFPNMIGLTIAVHNGR Unmodified 1940.0302 0.030201277 371 P0A7U3 rpsS 30S ribosomal protein S19 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.395 47.279 3 9.4539E-10 18971 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 119.46 119.05 120020000 0 0 1796700 5054800 5930700 6763800 0 0 0 12755000 20250000 18806000 0 0 1802800 5626000 6163800 5968700 0 0 0 10846000 10371000 7883100 19106 371 18508 355045;355046;355047;355048;355049;355050;355051;355052;355053;355054;355055;355056;355057;355058 216425;216426;216427;216428;216429;216430;216431;216432;216433 216428 8 STIFVQSHVPEHAQLGWALNCYTYFGELSR Unmodified 3509.6827 0.68265897 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 50.07 48.666 3;4 1.3624E-41 23541 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 205.89 203.91 1234300000 94939000 75152000 53428000 0 687290 0 122380000 121300000 107720000 0 0 0 89167000 65241000 104130000 0 0 0 151740000 129150000 119270000 0 0 0 19107 57 18509 355059;355060;355061;355062;355063;355064;355065;355066;355067;355068;355069;355070;355071;355072;355073;355074;355075;355076;355077;355078;355079;355080;355081;355082;355083 216434;216435;216436;216437;216438;216439;216440;216441;216442;216443;216444;216445;216446;216447;216448;216449;216450;216451;216452 216444 19 STIIGDAAVR Unmodified 1001.5506 0.55055881 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.476 21.675 2 0.00049378 8803 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 99.442 70.293 1058500000 77908000 76966000 68430000 737370 743510 0 80187000 76096000 81913000 0 6428700 0 89046000 79295000 90386000 0 0 0 125980000 108850000 94604000 0 0 945020 19108 1073 18510 355084;355085;355086;355087;355088;355089;355090;355091;355092;355093;355094;355095;355096;355097;355098;355099 216453;216454;216455;216456;216457;216458 216454 5 STLEQTIGNTPLVK Unmodified 1499.8195 0.81952302 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 34.561 33.271 2;3 0.047194 16248 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 78.116 71.583 17826000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17826000 0 0 0 0 0 0 0 0 0 19109 1133 18511 355100;355101;355102 216459;216460;216461 216459 3 STLFNALTK Unmodified 993.5495 0.54949617 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.941 31.48 2 0.00033674 14706 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.65 106.06 1752000000 132280000 118970000 121990000 4232700 4323900 4307700 147180000 140560000 127240000 4919000 5566800 5375800 134150000 146810000 139610000 5882000 4808200 4864200 143730000 169030000 167280000 6884300 6074500 5961600 19110 680 18512 355103;355104;355105;355106;355107;355108;355109;355110;355111;355112;355113;355114;355115;355116;355117;355118;355119;355120;355121;355122;355123;355124;355125;355126 216462;216463;216464;216465;216466;216467;216468;216469;216470;216471;216472;216473;216474;216475;216476;216477;216478;216479 216476 18 STLGHQYDNSLVSNAFGFLR Unmodified 2225.0865 0.086530182 1626 P60651 speB Agmatinase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 49.192 47.823 2;3 7.0287E-56 23331 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 354.93 340.97 928380000 55249000 60110000 52496000 0 0 756590 99674000 85031000 70366000 0 0 0 74315000 79733000 70411000 0 0 0 86572000 99404000 93122000 1135600 0 0 19111 1626 18513 355127;355128;355129;355130;355131;355132;355133;355134;355135;355136;355137;355138;355139;355140;355141;355142;355143;355144;355145;355146;355147;355148;355149;355150;355151;355152 216480;216481;216482;216483;216484;216485 216484 6 STLINDTLFPIAQR Unmodified 1587.8621 0.86205654 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 1 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 48.766 47.66 2;3 2.4605E-14 23386 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 226.29 216.6 459780000 21957000 27459000 23641000 1943600 2077700 3038700 18353000 18222000 19144000 7418000 7799800 10523000 16052000 14422000 15223000 76310000 55203000 52154000 18116000 19771000 15901000 6116200 4651100 4282300 19112 222 18514 355153;355154;355155;355156;355157;355158;355159;355160;355161;355162;355163;355164;355165;355166;355167;355168;355169;355170;355171;355172;355173;355174;355175;355176;355177;355178;355179;355180;355181;355182 216486;216487;216488;216489;216490;216491;216492;216493;216494;216495;216496;216497;216498;216499;216500;216501;216502;216503 216501 18 STLLALLK Unmodified 857.5586 0.5586043 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.738 41.019 2 0.013351 19027 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 73.616 8.8589 177380000 11941000 14243000 15212000 702120 831260 527200 19660000 13556000 11694000 0 0 991740 12612000 9183200 11383000 0 0 0 17966000 20359000 16518000 0 0 0 19113 1664 18515 355183;355184;355185;355186;355187;355188;355189;355190;355191;355192;355193;355194;355195;355196;355197;355198 216504;216505;216506;216507;216508;216509;216510;216511;216512;216513;216514;216515 216515 12 STLLGEAVAK Unmodified 987.56006 0.56006086 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 2 2 1 23.826 22.949 2 0.00049378 9881 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.442 88.614 1557500000 129300000 121300000 104280000 0 0 0 151140000 164050000 147970000 0 0 0 130180000 122200000 116810000 0 0 0 147400000 118320000 104500000 0 0 0 19114 56 18516 355199;355200;355201;355202;355203;355204;355205;355206;355207;355208;355209;355210;355211;355212;355213 216516;216517;216518;216519;216520;216521;216522;216523;216524;216525;216526;216527 216523 12 STLLLQTLCK Unmodified 1175.6584 0.6583947 1250 P24554 radA DNA repair protein RadA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.898 35.071 2 0.051936 16928 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 64.711 54.725 37926000 4953400 0 0 1283800 1021400 842680 0 3406200 3173100 3486600 3721600 3209500 0 0 0 1451200 0 0 3019200 0 3628200 1468500 1552400 1708000 19115 1250 18517 355214;355215;355216;355217;355218;355219;355220;355221;355222;355223;355224;355225;355226;355227;355228 216528 216528 0 STLLQQLTR Unmodified 1058.6084 0.60840804 1226 P23886 cydC ATP-binding/permease protein CydC yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 34.615 32.887 2 0.00058814 15528 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 106.38 96.395 50625000 3654100 0 0 0 0 0 4279500 3415900 5927700 2004000 2238100 1954400 4360800 3578100 3217900 0 0 0 5383800 4589100 6021400 0 0 0 19116 1226 18518 355229;355230;355231;355232;355233;355234;355235;355236;355237;355238;355239;355240;355241 216529;216530;216531;216532 216531 4 STLNIPGTGGK Unmodified 1043.5611 0.56112349 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.227 21.98 2 0.00012618 9309 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.86 100.02 577490000 0 26707000 0 0 0 0 0 0 68494000 16289000 16729000 13303000 79403000 78258000 83596000 24717000 16630000 17209000 68378000 67781000 0 0 0 0 19117 297 18519 355242;355243;355244;355245;355246;355247;355248;355249;355250;355251;355252;355253;355254 216533;216534;216535;216536;216537;216538;216539;216540;216541;216542;216543;216544 216538 6 STLNLPETGFPMR Unmodified 1461.7286 0.72859953 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 1 2 2 2 41.915 40.242 2;3 1.4433E-17 19623 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 215.06 207.93 1592600000 165900000 166270000 156580000 0 0 0 109850000 113280000 104660000 0 0 0 111440000 106980000 96937000 0 0 0 153350000 152290000 155060000 0 0 0 19118 58 18520 355255;355256;355257;355258;355259;355260;355261;355262;355263;355264;355265;355266;355267;355268;355269;355270;355271;355272;355273;355274;355275 216545;216546;216547;216548;216549;216550;216551;216552;216553;216554;216555;216556;216557;216558;216559 216548 12 STLPWIDEGAK Unmodified 1215.6136 0.61355299 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.261 35.645 2 0.0028417 16559 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 67.414 57.633 463220000 37415000 33700000 28361000 1802600 2110200 1390400 45825000 41678000 38574000 3321700 3536100 3814200 29497000 27484000 26091000 1458500 1294700 920020 44339000 39030000 42593000 3362700 2874300 2748600 19119 804 18521 355276;355277;355278;355279;355280;355281;355282;355283;355284;355285;355286;355287;355288;355289;355290;355291;355292;355293;355294;355295;355296;355297;355298;355299 216560;216561;216562;216563 216563 2 STLQELADR Unmodified 1031.5247 0.52473799 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By MS/MS 1 21.937 21.937 2 0.014496 6888 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 68.224 55.696 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19120 1004 18522 355300 216564 216564 1 STLQILLVNHINHANEVDETFR Unmodified 2562.319 0.31904931 1518 P39280 epmB L-lysine 2,3-aminomutase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 40.088 38.375 3 1.6984E-10 18658 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 127.5 124.57 62349000 0 4739000 5257600 0 0 0 4581200 4958400 6031000 0 0 0 0 5315200 5777200 0 0 0 8784400 9785000 7120000 0 0 0 19121 1518 18523 355301;355302;355303;355304;355305;355306;355307;355308;355309;355310 216565;216566 216566 2 STLSATLAGR Unmodified 975.53491 0.53490874 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.616 21.039 2 1.6668E-05 8306 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 151.04 142.11 426060000 46153000 43387000 39677000 0 0 0 48833000 52528000 44845000 0 0 0 21394000 20266000 20331000 0 0 0 30036000 30777000 27834000 0 0 0 19122 1910 18524 355311;355312;355313;355314;355315;355316;355317;355318;355319;355320;355321;355322 216567;216568;216569;216570;216571;216572;216573;216574;216575 216571 6 STLTPVVISNMDEIK Unmodified 1645.8597 0.85967328 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 42.67 40.874 2;3 5.7283E-12 19791 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 175.97 175.62 20448000000 1855200000 1538600000 1517700000 4543500 5178500 4846400 1847800000 1777100000 1849700000 5115000 4344200 4378300 1605600000 1594000000 1604800000 0 0 0 1800700000 1688700000 1737300000 0 0 2814800 19123 1741 18525 355323;355324;355325;355326;355327;355328;355329;355330;355331;355332;355333;355334;355335;355336;355337;355338;355339;355340;355341;355342;355343;355344;355345;355346;355347;355348;355349;355350;355351;355352;355353 216576;216577;216578;216579;216580;216581;216582;216583;216584;216585;216586;216587;216588;216589;216590;216591;216592;216593;216594;216595;216596;216597;216598;216599;216600;216601;216602;216603;216604 216588 29 STLTPVVISNMDEIK Oxidation (M) 1661.8546 0.8545879 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 3 3 35.158 33.656 2 8.4345E-07 16100 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 124.6 111.98 415860000 40659000 29940000 30115000 0 0 0 49362000 43184000 36498000 0 0 0 27304000 23018000 20362000 0 0 0 43283000 46502000 25628000 0 0 0 19124 1741 18525 355354;355355;355356;355357;355358;355359;355360;355361;355362;355363;355364;355365;355366;355367;355368;355369;355370;355371;355372;355373;355374;355375;355376;355377;355378;355379;355380 216605;216606;216607;216608;216609;216610;216611;216612;216613;216614;216615;216616;216617;216618;216619;216620;216621;216622;216623;216624;216625;216626;216627;216628;216629;216630;216631 216611 600 27 STLTPVVISNMDEIKELIK Unmodified 2129.1654 0.16535735 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 51.966 50.79 2;3 1.568E-14 18724 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 132.51 131.96 1501900000 93742000 94932000 94082000 31347000 29054000 29460000 117320000 131060000 130650000 19512000 19073000 15163000 83462000 91645000 83116000 26523000 22661000 31826000 104450000 109870000 105620000 12788000 10345000 14207000 19125 1741 18526 355381;355382;355383;355384;355385;355386;355387;355388;355389;355390;355391;355392;355393;355394;355395;355396;355397;355398;355399;355400;355401;355402;355403;355404;355405;355406;355407;355408;355409;355410;355411;355412;355413;355414;355415;355416;355417 216632;216633;216634;216635;216636;216637;216638;216639;216640;216641;216642;216643;216644;216645;216646;216647;216648;216649;216650;216651;216652 216633 19 STLTVEEEQDR Unmodified 1305.6048 0.6048388 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.37 16.082 2 2.2683E-26 5397 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 253.26 241.04 734660000 25001000 25634000 22108000 392370 265940 283020 85409000 79576000 68859000 2446400 2126600 2472600 80561000 72167000 69495000 0 0 0 70561000 63740000 63563000 0 0 0 19126 1468 18527 355418;355419;355420;355421;355422;355423;355424;355425;355426;355427;355428;355429;355430;355431;355432;355433;355434;355435 216653;216654;216655;216656;216657;216658;216659;216660;216661;216662;216663;216664 216661 12 STLTVEEEQDRLR Unmodified 1574.79 0.79001381 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 2 2 2 2 2 2 1 2 2 1 1 1 19.066 19.346 2;3 3.2962E-07 7029 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 90.731 85.188 147630000 0 0 0 2239800 1982500 2795600 6676100 32688000 27389000 16063000 16120000 13958000 4215100 5145200 3538500 0 0 0 6652300 2828300 3518400 0 686580 1131900 19127 1468 18528 355436;355437;355438;355439;355440;355441;355442;355443;355444;355445;355446;355447;355448;355449;355450;355451;355452;355453;355454;355455;355456;355457;355458;355459;355460;355461;355462;355463 216665;216666;216667;216668;216669;216670;216671;216672;216673;216674;216675;216676;216677;216678 216675 13 STLYLPDTAKEELEK Unmodified 1735.888 0.88799652 1525 P39325 ytfQ ABC transporter periplasmic-binding protein YtfQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 30.88 29.653 2;3 3.0972E-11 13728 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 199.12 197.24 723200000 246840000 234090000 230900000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7264100 4096800 0 0 0 0 19128 1525 18529 355464;355465;355466;355467;355468;355469;355470;355471;355472 216679;216680;216681;216682;216683;216684 216683 6 STMDHYAASNPLNK Unmodified 1547.7038 0.70384134 665 P0ABK2 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 18.724 19.099 2;3 1.8735E-26 6906 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 234.3 234.06 1692300000 48299000 57295000 40526000 6132600 8370600 8628900 265220000 242750000 235460000 10437000 13429000 15172000 136370000 124630000 117180000 16703000 11435000 12906000 99139000 88158000 96711000 13312000 13382000 10636000 19129 665 18530 355473;355474;355475;355476;355477;355478;355479;355480;355481;355482;355483;355484;355485;355486;355487;355488;355489;355490;355491;355492;355493;355494;355495;355496;355497;355498;355499;355500;355501;355502;355503;355504;355505;355506;355507;355508;355509;355510;355511;355512;355513;355514;355515;355516;355517;355518;355519 216685;216686;216687;216688;216689;216690;216691;216692;216693;216694;216695;216696;216697;216698;216699;216700;216701;216702;216703;216704;216705;216706;216707;216708;216709;216710;216711;216712;216713;216714;216715;216716;216717;216718;216719;216720;216721;216722 216717 38 STMMAGLSYAHFTQYGYLR Unmodified 2196.0132 0.013230583 479 P0A908 mipA MltA-interacting protein yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 43.89 41.989 3 0.00010505 16798 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 67.727 64.537 28929000 0 0 4004400 0 0 2092800 0 0 0 0 4832600 4738100 0 0 0 0 0 0 3072600 0 0 3978800 6210000 0 19130 479 18531 355520;355521;355522;355523;355524;355525;355526 216723 216723 1 STMQELNSR Unmodified 1064.4921 0.49205765 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.658 14.03 2 7.9632E-06 3540 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 169.57 161.3 1218900000 0 0 0 17081000 16267000 15574000 0 0 0 324550000 305030000 295930000 0 0 0 7571100 8113800 8730300 0 0 0 81125000 66441000 72491000 + 19131 16 18532 355527;355528;355529;355530;355531;355532;355533;355534;355535;355536;355537;355538 216724;216725;216726;216727;216728;216729;216730;216731;216732;216733;216734;216735 216729 12 STMQELNSR Oxidation (M) 1080.487 0.48697227 16 CON__P35527 yes yes 0 1 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 11.06 11.372 2 0.00081081 2342 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 105.14 98.965 63451000 0 0 0 0 0 0 0 0 0 22775000 14734000 11725000 0 0 0 0 0 0 3509100 0 0 3624500 3001100 4082000 + 19132 16 18532 355539;355540;355541;355542;355543;355544;355545 216736;216737 216737 8 1 STNRPYTSR Unmodified 1080.5312 0.53122035 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 7.7605 8.5708 2;3 0.00013313 1179 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 142.04 123.26 140320000 11171000 8588600 12493000 0 0 0 21630000 20287000 0 0 0 0 0 4579700 0 0 0 0 15766000 21962000 23842000 0 0 0 19133 499 18533 355546;355547;355548;355549;355550;355551;355552;355553;355554;355555;355556;355557 216738;216739;216740;216741;216742;216743;216744;216745;216746 216738 9 STPCITIDFMNMSQLTERTFTPSESLSSLSLFLSLAR Unmodified 4180.0531 0.053053073 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 1 By MS/MS By matching 1 1 38.598 36.42 6 0.16765 18146 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 3.9967 2.6415 55930000 0 0 0 0 0 0 30432000 25498000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19134 1781 18534 355558;355559 216747 216747 1 STPDFSTAENNQELANEVSCLK Unmodified 2453.1016 0.10164748 762 P0AD07 yecF Uncharacterized protein YecF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 40.925 39.258 2;3 9.5412E-28 19060 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 226.19 220.02 334330000 25678000 22382000 22056000 0 0 2058500 25745000 24955000 18704000 0 0 0 26683000 25475000 24457000 0 0 0 37899000 39703000 38538000 0 0 0 19135 762 18535 355560;355561;355562;355563;355564;355565;355566;355567;355568;355569;355570;355571;355572;355573;355574;355575;355576;355577;355578;355579;355580;355581;355582;355583;355584 216748;216749;216750;216751;216752;216753;216754;216755;216756;216757;216758;216759;216760;216761;216762 216754 14 STPFAAQVAAER Unmodified 1246.6306 0.63060004 366 P0A7R9 rpsK 30S ribosomal protein S11 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.407 23.482 2 3.0533E-05 10539 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 142.98 133.57 3264700000 408100000 0 425440000 17631000 18030000 18389000 188180000 197450000 175510000 42751000 39229000 39185000 244320000 229650000 0 18232000 12665000 11734000 364770000 375980000 360290000 23093000 30010000 24104000 19136 366 18536 355585;355586;355587;355588;355589;355590;355591;355592;355593;355594;355595;355596;355597;355598;355599;355600;355601;355602;355603;355604;355605;355606 216763;216764;216765;216766;216767;216768;216769;216770;216771;216772;216773;216774;216775;216776;216777;216778;216779;216780;216781;216782 216769 19 STPTLLSLMDEGVR Unmodified 1517.7759 0.77594365 1897 P77318 ydeN Uncharacterized sulfatase YdeN yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 51.158 49.866 2 1.2412E-05 24287 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.94 96.709 122540000 36665000 33158000 31566000 0 0 0 4783900 4211700 4350000 0 0 0 0 3456000 0 0 0 0 2181100 0 2171300 0 0 0 19137 1897 18537 355607;355608;355609;355610;355611;355612;355613;355614;355615 216783;216784 216784 2 STPVAVSTAR Unmodified 987.53491 0.53490874 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 13.794 14.05 2 0.051637 3622 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 49.444 31.458 22378000 0 3595800 0 0 0 0 0 0 0 4419600 3695000 4063600 0 0 0 0 0 881500 0 0 0 2528900 1458200 1735400 19138 1300 18538 355616;355617;355618;355619;355620;355621;355622;355623 216785 216785 1 STPYCTDIGK Unmodified 1140.5121 0.51212439 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.097 17.53 2 0.0029936 6282 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 93.143 89.158 2085900000 186510000 149160000 157820000 0 0 0 115050000 111660000 116290000 6109200 4392300 2615100 107690000 92760000 95849000 2831400 1824900 2429800 318480000 312220000 284210000 7587800 6777700 3623100 19139 937 18539 355624;355625;355626;355627;355628;355629;355630;355631;355632;355633;355634;355635;355636;355637;355638;355639;355640;355641;355642;355643;355644 216786;216787;216788;216789;216790;216791;216792;216793;216794;216795;216796;216797 216790 12 STQLDPTQLAIEFLR Unmodified 1730.9203 0.9202997 1674 P64476 ydiH Uncharacterized protein YdiH yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.187 53.702 2 5.9308E-27 21666 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 231.92 210.55 352390000 0 55981000 0 14825000 11002000 12258000 42712000 41745000 38583000 45013000 35442000 28699000 0 0 0 0 0 0 0 22766000 0 3362900 0 0 19140 1674 18540 355645;355646;355647;355648;355649;355650;355651;355652;355653;355654;355655;355656 216798;216799;216800;216801;216802 216801 5 STQSHMFDGISLTEHQR Unmodified 1972.9061 0.90612297 840 P0AE85 cpxP Periplasmic protein CpxP yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 24.882 24.039 3 9.5414E-11 10808 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.86 138.96 38862000 0 0 4938700 0 0 0 0 0 0 0 0 0 3889700 4380300 5531200 0 0 0 10813000 0 9308400 0 0 0 19141 840 18541 355657;355658;355659;355660;355661;355662 216803;216804;216805 216803 3 STQVYGQDVWLPAETLDLIR Unmodified 2303.1798 0.17976186 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 1 2 2 2 2 3 2 2 2 2 54.97 53.526 2;3 1.7768E-95 26487 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 341.29 330.65 11294000000 1584500000 1670600000 1322800000 8432500 7810700 2453000 539950000 456360000 509200000 0 0 0 716970000 704480000 649670000 0 0 0 1074500000 1049200000 997380000 0 0 0 19142 179 18542 355663;355664;355665;355666;355667;355668;355669;355670;355671;355672;355673;355674;355675;355676;355677;355678;355679;355680;355681;355682;355683;355684;355685;355686;355687;355688;355689;355690;355691;355692;355693;355694 216806;216807;216808;216809;216810;216811;216812;216813;216814;216815;216816;216817;216818;216819;216820;216821;216822;216823;216824;216825;216826;216827;216828;216829 216820 24 STQYETQGYTINNAGR Unmodified 1801.8231 0.82310485 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 21.23 21.216 2 1.318E-18 8630 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 194.39 193.35 53954000 0 0 0 0 0 0 19942000 16075000 17937000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19143 722 18543 355695;355696;355697 216830;216831;216832 216832 3 STSDDIHNTTATGK Unmodified 1446.6587 0.65866529 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 1 2 1 10.766 11.501 2;3 4.5947E-56 2714 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 305.71 301.52 1994400000 99682000 77615000 82134000 14193000 15832000 15672000 285940000 292540000 269150000 4111300 4784200 3283800 140210000 130280000 135850000 0 0 0 145470000 129220000 133270000 6627400 5766700 2737500 19144 1086 18544 355698;355699;355700;355701;355702;355703;355704;355705;355706;355707;355708;355709;355710;355711;355712;355713;355714;355715;355716;355717;355718;355719;355720;355721;355722;355723;355724;355725;355726;355727;355728;355729;355730;355731;355732;355733;355734;355735 216833;216834;216835;216836;216837;216838;216839;216840;216841;216842;216843;216844;216845;216846;216847 216842 15 STSDDIHNTTATGK Acetyl (Protein N-term) 1488.6692 0.66922997 1086 P13029 katG Catalase-peroxidase yes yes 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.354 13.237 2 3.4965E-36 3800 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 270.02 269.78 1240900000 225800000 208680000 211990000 1984800 2094200 2094500 121010000 121840000 136140000 0 0 0 35983000 28447000 31033000 0 0 0 36002000 38166000 39670000 0 0 0 19145 1086 18544 355736;355737;355738;355739;355740;355741;355742;355743;355744;355745;355746;355747;355748;355749;355750 216848;216849;216850;216851;216852;216853;216854;216855;216856;216857 216855 10 STSHNPR Unmodified 797.37801 0.37801417 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 4.1186 5.008 2 0.004947 944 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.69 101.69 40593000 5866300 6285600 5359000 108090 73024 0 0 0 0 0 0 0 2365400 2658700 2268200 0 0 0 6291900 5057800 4259200 0 0 0 19146 222 18545 355751;355752;355753;355754;355755;355756;355757;355758;355759;355760;355761 216858;216859;216860;216861;216862;216863;216864;216865 216862 8 STSNILSAANALIENNNGR Unmodified 1957.9817 0.98173076 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 45.981 45.356 3 0.0010908 16385 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 62.617 59.068 21317000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3643300 7156300 6805400 0 0 0 0 1844600 1867900 19147 80 18546 355762;355763;355764;355765;355766 216866;216867 216867 2 STSSFSCLSR Unmodified 1130.5026 0.50262234 17 CON__P35908 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.549 18.728 2 0.0085446 5815 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 65.157 57.511 54005000 0 0 0 4248800 5899200 4401600 0 0 0 5666700 5657000 4220400 0 0 0 4107300 0 3443700 0 0 1547000 5634700 5112600 4066100 + 19148 17 18547 355767;355768;355769;355770;355771;355772;355773;355774;355775;355776;355777;355778 216868 216868 1 STTDDLYLVHDR Unmodified 1433.6787 0.67867245 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 23.99 23.286 2 0.00036588 10082 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.014 78.634 26935000 8915200 8449300 9570200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19149 1664 18548 355779;355780;355781 216869 216869 1 STTHNVPQGDLVLR Unmodified 1535.8056 0.80560429 474 P0A8Z0 yciA Acyl-CoA thioester hydrolase YciA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 19.915 20.387 2;3 7.8726E-08 8095 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 136.5 119.97 383110000 8803100 9099300 7657200 0 0 770510 37579000 36251000 48183000 0 0 0 35371000 34022000 34047000 0 0 0 45182000 44620000 41522000 0 0 0 19150 474 18549 355782;355783;355784;355785;355786;355787;355788;355789;355790;355791;355792;355793;355794;355795;355796;355797;355798;355799;355800;355801;355802;355803;355804;355805;355806 216870;216871;216872;216873;216874;216875;216876;216877;216878;216879;216880;216881;216882;216883;216884;216885;216886;216887;216888;216889;216890;216891;216892 216875 23 STTIGIISSLVNK Unmodified 1331.766 0.76603089 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.182 43.744 2 0.00090205 21806 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 70.488 68.894 223190000 12457000 10992000 12795000 2563900 2547700 2103400 29561000 30998000 22461000 0 0 0 17079000 13195000 16493000 0 0 0 17784000 17120000 15042000 0 0 0 19151 1447 18550 355807;355808;355809;355810;355811;355812;355813;355814;355815;355816;355817;355818;355819;355820;355821 216893;216894;216895;216896 216893 4 STTLIPR Unmodified 786.45995 0.45995289 1198 P22524 mukE Chromosome partition protein MukE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 17.892 18.414 2 0.02186 6779 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.269 42.486 1866400000 366170000 355400000 364930000 0 0 0 46375000 50250000 48463000 0 4048000 0 0 285810000 0 0 0 0 0 307840000 37155000 0 0 0 19152 1198 18551 355822;355823;355824;355825;355826;355827;355828;355829;355830;355831 216897;216898;216899 216898 3 STTWFVGADWLAEHIDDPEIQIIDAR Unmodified 2997.4509 0.45085135 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.147 53.674 3 1.8047E-15 26434 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 139.47 132.97 781840000 79978000 74284000 63621000 0 0 0 65323000 64421000 66726000 0 0 0 61992000 65006000 58474000 0 0 0 56649000 64982000 60384000 0 0 0 19153 1364 18552 355832;355833;355834;355835;355836;355837;355838;355839;355840;355841;355842;355843 216900;216901;216902;216903;216904;216905;216906;216907;216908;216909 216903 10 STVAGALEEALHK Unmodified 1324.6987 0.69867961 251 P0A6J1 cysC Adenylyl-sulfate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.968 30.629 2;3 1.8632E-05 14390 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.494 81.122 773290000 63454000 56859000 64500000 0 0 0 67523000 59715000 60563000 0 0 0 39766000 49093000 39503000 0 0 0 82414000 92443000 97461000 0 0 0 19154 251 18553 355844;355845;355846;355847;355848;355849;355850;355851;355852;355853;355854;355855;355856;355857;355858;355859;355860;355861;355862;355863;355864;355865;355866;355867 216910;216911;216912;216913;216914;216915;216916;216917;216918;216919;216920;216921;216922;216923;216924 216914 10 STVEAIWAGIK Unmodified 1173.6394 0.63937381 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.292 39.464 2 0.00016635 18512 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 108.81 103.82 1986900000 204530000 193370000 178030000 4912600 4580300 4832200 347500000 346360000 359710000 10675000 8774800 7761400 54490000 46618000 49426000 0 0 0 53216000 57864000 54218000 0 0 0 19155 64 18554 355868;355869;355870;355871;355872;355873;355874;355875;355876;355877;355878;355879;355880;355881;355882;355883;355884;355885 216925;216926;216927;216928;216929;216930;216931;216932;216933;216934;216935;216936;216937;216938 216936 14 STVGHDLNLDVCSK Unmodified 1543.7301 0.73005609 358 P0A7M9 rpmE 50S ribosomal protein L31 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 22.101 21.895 2;3 5.2092E-45 8913 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 280.57 256.48 7447800000 365110000 1096400000 954500000 77047000 71716000 51776000 336490000 358700000 316180000 107920000 92589000 111370000 148710000 135950000 414440000 79975000 70417000 68954000 812050000 706220000 768670000 126940000 100380000 75276000 19156 358 18555 355886;355887;355888;355889;355890;355891;355892;355893;355894;355895;355896;355897;355898;355899;355900;355901;355902;355903;355904;355905;355906;355907;355908;355909;355910;355911;355912;355913;355914;355915;355916;355917;355918;355919;355920;355921;355922;355923;355924;355925;355926;355927;355928;355929;355930;355931 216939;216940;216941;216942;216943;216944;216945;216946;216947;216948;216949;216950;216951;216952;216953;216954;216955;216956;216957;216958;216959;216960;216961;216962;216963;216964;216965;216966;216967;216968;216969;216970;216971;216972;216973;216974 216968 36 STVGTITEIHDYLR Unmodified 1603.8206 0.82058566 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 2 1 2 2 2 1 2 2 2 2 2 2 1 1 1 34.708 33.284 2;3 1.5372E-19 11736 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 209.85 183.18 1147600000 80790000 74242000 75250000 4163700 944840 1442800 64823000 55824000 46301000 17561000 12353000 14098000 45223000 37984000 5593600 162660000 129460000 160410000 44434000 44739000 44064000 7058800 9653100 8482300 19157 222 18556 355932;355933;355934;355935;355936;355937;355938;355939;355940;355941;355942;355943;355944;355945;355946;355947;355948;355949;355950;355951;355952;355953;355954;355955;355956;355957;355958;355959;355960;355961;355962;355963;355964;355965;355966;355967;355968;355969;355970 216975;216976;216977;216978;216979;216980;216981;216982;216983;216984;216985;216986;216987 216976 11 STVTTLVGEMAK Unmodified 1235.6431 0.64313856 1098 P14900 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.875 33.419 2 2.4249E-06 15973 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 142 138.88 403200000 35407000 38949000 33178000 0 0 0 39917000 34563000 27756000 0 0 0 30383000 24958000 23808000 0 0 0 37432000 37130000 39721000 0 0 0 19158 1098 18557 355971;355972;355973;355974;355975;355976;355977;355978;355979;355980;355981;355982 216988;216989;216990;216991;216992;216993;216994;216995;216996;216997;216998 216990 11 STWLSSPEVPVWPLPAK Unmodified 1893.0036 0.0036354 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 54.114 52.663 2 2.8808E-06 26028 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 142.04 133.97 369810000 0 0 0 0 0 0 54283000 65195000 62136000 0 0 0 42777000 40408000 40319000 0 0 0 20892000 22796000 21007000 0 0 0 19159 1087 18558 355983;355984;355985;355986;355987;355988;355989;355990;355991 216999;217000;217001;217002;217003;217004;217005;217006;217007 217001 9 STWVTPSAEAAAEVNAHLTAPLSR Unmodified 2478.2503 0.25030105 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By matching By MS/MS 1 1 44.019 42.542 3 0.00012363 20636 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 77.053 71.434 50089000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2917700 47171000 0 0 0 0 19160 280 18559 355992;355993 217008 217008 1 STYPALLGLEQAR Unmodified 1417.7565 0.75652884 1202 P22939 ispA Farnesyl diphosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.309 39.708 2 3.5262E-06 19136 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.63 115.42 312700000 22280000 24448000 21715000 960040 0 0 18634000 22043000 18715000 6103800 3999800 4061700 18653000 14922000 14811000 13565000 8596000 735640 29212000 29329000 26426000 3878000 4462700 5148400 19161 1202 18560 355994;355995;355996;355997;355998;355999;356000;356001;356002;356003;356004;356005;356006;356007;356008;356009;356010;356011;356012;356013;356014;356015 217009;217010;217011;217012;217013 217010 5 STYTDKLPLMINPK Unmodified 1619.8593 0.85927935 37 P00582 polA DNA polymerase I yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 34.564 33.109 2;3 3.2117E-08 15752 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.64 139.68 222610000 13470000 13799000 11769000 0 0 1016700 22609000 22461000 19015000 1668900 1616800 1580200 9068900 7231700 10027000 12131000 8720700 11925000 19209000 18304000 16004000 0 0 988820 19162 37 18561 356016;356017;356018;356019;356020;356021;356022;356023;356024;356025;356026;356027;356028;356029;356030;356031;356032;356033;356034;356035;356036;356037;356038;356039;356040;356041;356042;356043 217014;217015;217016;217017;217018 217018 5 SVAAQQAQYK Unmodified 1092.5564 0.55637247 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.522 12.142 2 0.00034694 2641 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 109.01 93.35 215130000 0 0 0 0 0 0 39352000 25153000 34145000 20268000 13911000 12676000 16021000 14067000 14094000 0 0 2842500 9167300 5436200 5793500 0 2200400 0 19163 500 18562 356044;356045;356046;356047;356048;356049;356050;356051;356052;356053;356054;356055;356056;356057 217019;217020 217019 2 SVAAQQAQYKDQVAFFHGCFVNYNHPQLGK Unmodified 3451.652 0.65202755 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 35.187 33.25 5 0.045763 13041 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 37.637 32.78 38068000 0 0 0 0 0 0 5204100 6040700 4328700 0 8041100 8081600 2834600 0 0 0 0 0 0 0 0 0 0 3537200 19164 500 18563 356058;356059;356060;356061;356062;356063;356064 217021;217022 217021 2 SVAAVGHDAK Unmodified 953.49304 0.49304393 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9.0366 9.6154 2 0.00014602 1026 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 126.24 122.11 1400200000 0 0 0 19587000 24471000 20491000 24141000 18872000 19743000 121580000 110140000 97196000 77194000 78063000 28388000 35798000 33123000 27611000 173720000 163590000 184850000 47582000 47554000 46507000 19165 564 18564 356065;356066;356067;356068;356069;356070;356071;356072;356073;356074;356075;356076;356077;356078;356079;356080;356081;356082;356083;356084;356085 217023;217024;217025;217026;217027;217028;217029;217030;217031;217032;217033;217034;217035;217036;217037;217038;217039;217040;217041;217042;217043 217040 21 SVADGPFR Unmodified 847.41882 0.41881635 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.369 18.984 2 0.00065296 7253 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.86 84.14 197830000 25951000 23780000 17790000 0 0 0 12029000 13834000 10455000 0 0 0 12489000 11133000 14795000 0 0 0 18778000 17806000 18990000 0 0 0 19166 740 18565 356086;356087;356088;356089;356090;356091;356092;356093;356094;356095;356096;356097 217044;217045;217046;217047;217048;217049;217050;217051;217052;217053;217054;217055 217045 9 SVADQLPK Unmodified 856.46543 0.46543219 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 17.233 17.909 2 0.095694 6537 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 50.127 35.612 147810000 0 0 30493000 0 0 0 21610000 19508000 18040000 0 0 0 9210400 8462500 9327500 0 0 0 14954000 16205000 0 0 0 0 19167 1850 18566 356098;356099;356100;356101;356102;356103;356104;356105;356106 217056;217057 217056 2 SVAEAANTPVALVFGR Unmodified 1600.8573 0.85730551 825 P0AE01 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 2 2 2 1 47.117 45.69 2;3 2.7244E-49 22566 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 274.2 249.98 707900000 8134100 8606500 8836000 0 0 0 64129000 61726000 60432000 0 0 0 84185000 80077000 78297000 0 0 0 85924000 89617000 76746000 1194200 0 0 19168 825 18567 356107;356108;356109;356110;356111;356112;356113;356114;356115;356116;356117;356118;356119;356120;356121;356122;356123;356124;356125;356126;356127;356128 217058;217059;217060;217061;217062;217063;217064;217065;217066;217067;217068;217069;217070;217071;217072;217073;217074;217075 217062 15 SVAGEHTWPDK Unmodified 1225.5728 0.57275081 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 13.92 14.314 3 0.0075947 3546 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 49.448 44.554 58848000 15305000 10723000 10373000 0 0 0 0 0 0 0 0 0 0 0 0 5714100 7559500 9173500 0 0 0 0 0 0 19169 515 18568 356129;356130;356131;356132;356133;356134 217076 217076 1 SVAGEHTWPDKGSLYIATTHTQAR Unmodified 2625.2936 0.29356284 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 3 1 1 22.103 22.096 3;4;5 3.7016E-10 6983 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 122.34 121.48 113450000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44123000 43432000 25890000 0 0 0 0 0 0 19170 515 18569 356135;356136;356137;356138;356139 217077;217078;217079;217080;217081;217082 217079 6 SVAGTSFDFR Unmodified 1085.5142 0.5141733 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 29.768 28.432 2 4.5348E-05 13138 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.1 113.17 692580000 81669000 76727000 67712000 0 0 0 71194000 77455000 62843000 0 0 0 30310000 36033000 34953000 0 0 0 48442000 45857000 59380000 0 0 0 19171 507 18570 356140;356141;356142;356143;356144;356145;356146;356147;356148;356149;356150;356151;356152 217083;217084;217085;217086;217087;217088;217089;217090;217091;217092;217093 217089 11 SVAIALR Unmodified 728.45447 0.45447358 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 2 2 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 21.073 21.202 2 0.0018969 6985 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 121.87 77.07 1984600000 122680000 116550000 122090000 10140000 10284000 13621000 214970000 201080000 193700000 29404000 41023000 41578000 142610000 124060000 5044000 9468400 9155100 8676300 171900000 181890000 155220000 19068000 19268000 21082000 19172 245 18571 356153;356154;356155;356156;356157;356158;356159;356160;356161;356162;356163;356164;356165;356166;356167;356168;356169;356170;356171;356172;356173;356174;356175;356176;356177;356178;356179;356180;356181;356182;356183;356184 217094;217095;217096;217097;217098;217099;217100;217101;217102;217103;217104;217105;217106;217107;217108;217109;217110;217111;217112;217113 217098 20 SVALEEGAILAR Unmodified 1227.6823 0.68230126 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.506 32.034 2 2.2044E-05 12096 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 139.96 120.69 252000000 9366900 0 6549200 2743300 5368700 3477000 21378000 22705000 21228000 7262600 7274100 7266400 14572000 14622000 10065000 1528000 1368300 1232100 24612000 25132000 26571000 5136900 5875300 6662500 19173 997 18572 356185;356186;356187;356188;356189;356190;356191;356192;356193;356194;356195;356196;356197;356198;356199;356200;356201;356202;356203;356204;356205;356206;356207 217114;217115;217116;217117;217118;217119;217120;217121;217122;217123;217124;217125;217126 217121 13 SVALILAGGR Unmodified 955.58147 0.581465 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 2 1 1 1 1 1 1 1 1 1 32.289 30.963 2 2.3301E-05 14854 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 148.04 115.98 793220000 72210000 62302000 58612000 0 0 0 134380000 116070000 113620000 0 0 0 42836000 40561000 40183000 0 0 0 42418000 37496000 32529000 0 0 0 19174 283 18573 356208;356209;356210;356211;356212;356213;356214;356215;356216;356217;356218;356219;356220 217127;217128;217129;217130;217131 217129 3 SVALSGVPAGNTALCTVGK Unmodified 1800.9404 0.94038322 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 34.122 32.883 2 1.7779E-17 15703 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.04 165.72 335020000 122210000 109010000 103790000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19175 1374 18574 356221;356222;356223 217132;217133;217134 217132 3 SVANAEQMDR Unmodified 1119.4979 0.49787131 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.369 12.983 2 3.0675E-09 3009 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 196.88 174.79 1249300000 135700000 145630000 162000000 9029300 11437000 11181000 91911000 87154000 78186000 5772200 4824200 4242000 62487000 52437000 53398000 39692000 28464000 38551000 69234000 75871000 68994000 5168900 4537500 3395500 19176 570 18575 356224;356225;356226;356227;356228;356229;356230;356231;356232;356233;356234;356235;356236;356237;356238;356239;356240;356241;356242;356243;356244;356245;356246;356247 217135;217136;217137;217138;217139;217140;217141;217142;217143;217144;217145;217146;217147;217148;217149;217150;217151;217152;217153;217154;217155 217137 18 SVANAIIAACDEVLNNGK Unmodified 1857.9255 0.92546143 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS 1 48.68 46.977 3 4.0305E-06 23288 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.77 93.122 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19177 697 18576 356248 217156 217156 1 SVANIIR Unmodified 771.46029 0.46028724 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 1 1 2 2 1 1 1 18.574 18.946 2 0.0018969 6722 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 121.87 97.241 372620000 21988000 17199000 19656000 0 0 0 32094000 32964000 29559000 7438400 6504200 5983700 26445000 26108000 22032000 1582200 0 0 39051000 33871000 32044000 6868400 5753600 5481400 19178 1197 18577 356249;356250;356251;356252;356253;356254;356255;356256;356257;356258;356259;356260;356261;356262;356263;356264;356265;356266;356267;356268;356269;356270;356271;356272 217157;217158;217159;217160;217161;217162;217163;217164;217165;217166;217167;217168;217169;217170 217169 14 SVANSQDIDLVVDANAVAYNSSDVK Unmodified 2593.2508 0.25075456 888 P0AEU7 skp Chaperone protein Skp yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 45.813 44.247 2;3 8.9425E-22 21876 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 215.49 204.38 330060000 6299500 27877000 26066000 0 0 0 30545000 31003000 32965000 2833100 1668900 0 30288000 23651000 26677000 0 0 0 28365000 24441000 29153000 0 3507800 4719400 19179 888 18578 356273;356274;356275;356276;356277;356278;356279;356280;356281;356282;356283;356284;356285;356286;356287;356288;356289;356290;356291;356292;356293;356294;356295;356296;356297;356298;356299 217171;217172;217173;217174;217175;217176;217177;217178;217179;217180 217171 10 SVANSQDIDLVVDANAVAYNSSDVKDITADVLK Unmodified 3448.7209 0.72093778 888 P0AEU7 skp Chaperone protein Skp yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.933 51.894 3 2.7392E-18 19389 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 135.17 130.21 122250000 0 0 0 9112500 3755000 4793400 0 0 0 22124000 15807000 13188000 0 0 0 7662500 6959000 7620000 0 0 0 11882000 10699000 8648700 19180 888 18579 356300;356301;356302;356303;356304;356305;356306;356307;356308;356309;356310;356311 217181;217182;217183;217184;217185;217186;217187;217188;217189;217190 217182 10 SVAVLDR Unmodified 758.42865 0.42865276 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 16.078 16.625 2 0.0071597 5925 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 92.467 37.68 302880000 0 0 0 0 0 0 65145000 74014000 58966000 0 2797600 3488700 0 0 0 0 0 0 32250000 30602000 31097000 0 0 4516100 19181 1609 18580 356312;356313;356314;356315;356316;356317;356318;356319;356320 217191;217192;217193;217194;217195;217196 217192 6 SVCISINEVVCHGIPDDAK Unmodified 2111.998 0.99797445 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.878 37.11 3 3.1828E-10 17857 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.84 126.43 1181000000 137050000 108890000 115770000 0 0 0 96607000 98886000 95191000 739460 0 0 69291000 57728000 71466000 0 0 0 109750000 106870000 112740000 0 0 0 19182 829 18581 356321;356322;356323;356324;356325;356326;356327;356328;356329;356330;356331;356332;356333 217197;217198;217199;217200;217201;217202;217203;217204;217205;217206;217207 217203 11 SVCPVAELPPEIEQR Unmodified 1722.8611 0.86107026 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 40.857 39.263 2;3 4.6446E-08 17382 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.49 125.98 362140000 37495000 35854000 37635000 0 0 0 29747000 24604000 31067000 0 0 0 23429000 25507000 28216000 0 0 0 31005000 30490000 27090000 0 0 0 19183 904 18582 356334;356335;356336;356337;356338;356339;356340;356341;356342;356343;356344;356345;356346;356347;356348;356349;356350;356351;356352;356353;356354;356355;356356;356357 217208;217209;217210;217211;217212;217213 217210 5 SVDDVIAQVK Unmodified 1072.5764 0.57643921 1626 P60651 speB Agmatinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.129 27.647 2 3.4948E-05 13006 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 142.79 117.85 975030000 65326000 69002000 58531000 0 0 0 102400000 0 97465000 1073300 1021800 1461100 69687000 78843000 71859000 0 0 0 122780000 117040000 116690000 1089600 762890 0 19184 1626 18583 356358;356359;356360;356361;356362;356363;356364;356365;356366;356367;356368;356369;356370;356371;356372;356373;356374 217214;217215;217216;217217;217218 217216 5 SVDEAANSDIVDK Unmodified 1361.6311 0.63105355 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.376 17.818 2 1.4045E-09 6215 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 177.57 167.34 2978800000 70351000 67656000 65439000 11810000 10577000 10700000 273250000 252000000 295790000 51675000 43971000 37712000 234590000 236710000 224350000 11945000 6915100 7204300 348280000 321030000 301590000 33930000 33284000 28065000 19185 642 18584 356375;356376;356377;356378;356379;356380;356381;356382;356383;356384;356385;356386;356387;356388;356389;356390;356391;356392;356393;356394;356395;356396;356397;356398;356399 217219;217220;217221;217222;217223;217224;217225;217226;217227;217228;217229;217230;217231;217232;217233;217234;217235;217236;217237;217238;217239 217237 21 SVDEAANSDIVDKLVAEL Unmodified 1886.9473 0.94730231 642 P0ABA0 atpF ATP synthase subunit b yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.26 54.122 2 5.1948E-22 21813 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 240.42 234.69 484970000 0 0 0 17138000 19630000 18779000 0 136110 106150 32579000 40489000 36215000 0 0 0 31708000 32120000 54133000 0 0 0 71332000 74485000 56117000 19186 642 18585 356400;356401;356402;356403;356404;356405;356406;356407;356408;356409;356410;356411;356412;356413 217240;217241;217242;217243;217244;217245;217246;217247;217248;217249 217241 10 SVDEAIAACGDVPEIMVIGGGR Unmodified 2215.0613 0.061302988 672 P0ABQ4 folA Dihydrofolate reductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 50.667 49.339 2;3 1.2419E-43 23169 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 317.55 316.16 447710000 32665000 31180000 25008000 0 0 0 26041000 22057000 18611000 0 0 0 52718000 52462000 47683000 0 0 0 45975000 48687000 44628000 0 0 0 19187 672 18586 356414;356415;356416;356417;356418;356419;356420;356421;356422;356423;356424;356425;356426;356427;356428;356429;356430;356431;356432;356433;356434 217250;217251;217252;217253;217254;217255;217256;217257;217258;217259 217258 10 SVDGIQVGEGR Unmodified 1115.5571 0.55710075 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.594 20.021 2 4.7753E-05 7906 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 129.83 111.92 663340000 109140000 94085000 95724000 1050200 872900 971530 46485000 50909000 49382000 0 0 763440 38268000 28233000 31516000 0 0 0 38202000 42798000 33985000 945770 0 0 19188 636 18587 356435;356436;356437;356438;356439;356440;356441;356442;356443;356444;356445;356446;356447;356448;356449;356450;356451 217260;217261;217262;217263;217264;217265;217266;217267;217268;217269;217270;217271 217261 11 SVDPNTASPYASYLQYGHIAGIDEILEGK Unmodified 3107.5088 0.50876016 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 1 1 1 2 2 3 2 2 2 3 3 3 53.782 52.354 2;3;4 2.3413E-41 25999 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 208.72 200.65 14441000000 4166800000 3535500000 3417300000 6937300 7094700 7239800 416340000 426630000 382580000 0 0 0 292570000 272000000 266850000 0 0 0 436990000 417600000 388650000 0 0 0 19189 1217 18588 356452;356453;356454;356455;356456;356457;356458;356459;356460;356461;356462;356463;356464;356465;356466;356467;356468;356469;356470;356471;356472;356473;356474;356475;356476;356477;356478;356479;356480;356481;356482;356483;356484;356485;356486 217272;217273;217274;217275;217276;217277;217278;217279;217280;217281;217282;217283;217284;217285;217286;217287;217288;217289;217290;217291;217292;217293 217272 22 SVDPNTASPYASYLQYGHIAGIDEILEGKKPITDLGVK Unmodified 4059.0841 0.084077151 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 51.696 50.357 4;5 3.4196E-23 18185 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 154.08 153.73 126730000 0 0 0 43153000 39299000 32414000 0 0 0 0 4513100 3008900 0 0 0 0 0 0 0 0 0 2570800 1771800 0 19190 1217 18589 356487;356488;356489;356490;356491;356492;356493;356494;356495;356496 217294;217295;217296;217297 217294 4 SVDTPVIGLK Unmodified 1027.5914 0.59136099 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.407 28.094 2 0.00062224 9632 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 91.069 72.53 1990500000 0 0 0 19959000 0 0 312090000 0 296170000 147680000 136650000 145230000 164940000 152960000 150670000 19158000 13907000 15610000 104590000 119740000 112330000 27575000 25193000 26071000 19191 664 18590 356497;356498;356499;356500;356501;356502;356503;356504;356505;356506;356507;356508;356509;356510;356511;356512;356513;356514 217298;217299;217300;217301;217302;217303;217304;217305;217306;217307;217308;217309;217310;217311;217312;217313;217314;217315 217298 10 SVDVGTWIAGVGYR Unmodified 1478.7518 0.75177781 483 P0A917 ompX Outer membrane protein X yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 2 1 1 1 2 1 2 2 46.933 45.578 2;3 1.4964E-19 16563 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 210.27 202.35 186770000 0 0 0 8468500 5140500 6107200 0 0 0 32650000 35620000 34817000 0 0 0 10484000 6870500 9968000 0 0 0 2527800 17940000 16179000 19192 483 18591 356515;356516;356517;356518;356519;356520;356521;356522;356523;356524;356525;356526;356527;356528;356529;356530;356531;356532 217316;217317;217318;217319;217320;217321 217318 6 SVDVGTWIAGVGYRF Unmodified 1625.8202 0.82019173 483 P0A917 ompX Outer membrane protein X yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 54.099 52.969 2 1.5916E-06 21161 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 114.83 103.37 73490000 0 0 0 4577800 3417100 5373500 0 0 0 6865700 13431000 11055000 0 0 0 6344200 3848000 0 0 0 0 11764000 0 6813500 19193 483 18592 356533;356534;356535;356536;356537;356538;356539;356540;356541;356542 217322;217323;217324 217324 3 SVEEILGK Unmodified 873.48075 0.48074791 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.93 23.106 2 0.005333 10370 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.794 56.569 5635100000 893510000 827350000 709760000 0 0 0 247580000 235050000 230760000 0 58361000 59735000 302510000 273210000 302750000 25739000 22769000 24196000 449450000 460090000 401130000 38436000 35846000 36854000 19194 376 18593 356543;356544;356545;356546;356547;356548;356549;356550;356551;356552;356553;356554;356555;356556;356557;356558;356559;356560;356561;356562 217325;217326;217327;217328;217329;217330;217331;217332;217333;217334;217335;217336;217337;217338;217339;217340;217341;217342 217328 18 SVEELNTELLNLLR Unmodified 1641.8938 0.8937506 357 P0A7M6 rpmC 50S ribosomal protein L29 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 54.985 53.763 2;3 9.7208E-47 19569 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 347.99 329.48 5319500000 800440000 729600000 777460000 59627000 72750000 56770000 0 0 27438000 69137000 71989000 67952000 68212000 388810000 69592000 42673000 73953000 92761000 512040000 545480000 543930000 93509000 71618000 83737000 19195 357 18594 356563;356564;356565;356566;356567;356568;356569;356570;356571;356572;356573;356574;356575;356576;356577;356578;356579;356580;356581;356582;356583;356584;356585;356586;356587;356588;356589;356590;356591;356592;356593;356594;356595;356596;356597;356598;356599;356600;356601;356602;356603;356604;356605;356606;356607;356608;356609;356610 217343;217344;217345;217346;217347;217348;217349;217350;217351;217352;217353;217354;217355;217356;217357;217358;217359;217360;217361;217362;217363;217364;217365;217366;217367;217368;217369;217370;217371;217372;217373;217374;217375;217376;217377;217378;217379;217380;217381;217382;217383 217370 41 SVEENLALFEK Unmodified 1277.6503 0.65033243 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.658 35.985 2 3.1389E-06 17715 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 154.56 138.35 1997300000 167510000 165350000 138640000 0 0 0 171510000 172400000 153010000 0 0 0 160120000 147510000 139760000 0 0 0 193810000 178880000 208830000 0 0 0 19196 63 18595 356611;356612;356613;356614;356615;356616;356617;356618;356619;356620;356621;356622 217384;217385;217386;217387;217388;217389 217386 6 SVEFAVFAGPANDPK Unmodified 1547.762 0.76200815 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 2 2 1 2 2 2 2 2 2 40.796 39.057 2;3 2.3679E-15 18971 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 196.67 196.67 2097600000 130370000 106320000 121310000 743080 980380 0 200610000 186330000 175840000 1921300 0 0 191720000 180020000 155010000 0 0 0 213970000 222500000 209980000 0 0 0 19197 1189 18596 356623;356624;356625;356626;356627;356628;356629;356630;356631;356632;356633;356634;356635;356636;356637;356638;356639;356640;356641;356642;356643;356644;356645;356646;356647 217390;217391;217392;217393;217394;217395;217396;217397;217398;217399;217400;217401;217402;217403;217404 217397 15 SVESEPCK Unmodified 934.4066 0.40659669 766 P0AD33 yfcZ UPF0381 protein YfcZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.391 11.062 2 0.0027006 2520 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.299 91.537 5382400000 110730000 116300000 93910000 1489800 766440 0 1172000000 982710000 946730000 25787000 25194000 18735000 0 424920000 499430000 0 4697100 0 348440000 318020000 292480000 0 0 0 19198 766 18597 356648;356649;356650;356651;356652;356653;356654;356655;356656;356657;356658;356659;356660;356661;356662;356663;356664;356665;356666;356667;356668 217405;217406;217407;217408;217409;217410;217411;217412;217413;217414;217415;217416;217417;217418;217419;217420;217421 217411 17 SVEYMAAQGVEHLYEVGPGK Unmodified 2163.0307 0.030654786 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 40.173 38.501 2;3 3.4969E-30 17857 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 261.78 260.53 9025900000 594640000 570760000 551280000 2318800 2364500 1574000 628590000 595920000 714770000 0 0 0 883120000 995560000 758430000 0 0 0 899510000 934620000 892440000 0 0 0 19199 597 18598 356669;356670;356671;356672;356673;356674;356675;356676;356677;356678;356679;356680;356681;356682;356683;356684;356685;356686;356687;356688;356689;356690;356691;356692;356693;356694;356695 217422;217423;217424;217425;217426;217427;217428;217429;217430;217431;217432;217433;217434;217435;217436;217437;217438;217439;217440;217441;217442;217443;217444;217445 217445 24 SVFAEGAEK Unmodified 936.45526 0.45526144 1060 P10443 dnaE DNA polymerase III subunit alpha yes yes 0 0 0 By MS/MS By matching 1 1 15.581 15.561 2 0.14228 4324 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 38.776 31.085 2646100 0 0 0 0 0 0 0 0 0 1566800 1079300 0 0 0 0 0 0 0 0 0 0 0 0 0 19200 1060 18599 356696;356697 217446 217446 1 SVFDTLATAAK Unmodified 1122.5921 0.59208927 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.483 36.513 2 0.00017926 17071 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.15 95.794 4157200000 0 0 0 0 0 0 594720000 607430000 608580000 2480200 1880900 2564200 436760000 499410000 435350000 0 0 0 345840000 317060000 300510000 2433100 0 2182200 19201 40 18600 356698;356699;356700;356701;356702;356703;356704;356705;356706;356707;356708;356709;356710;356711 217447;217448;217449;217450;217451 217449 5 SVFELTQQHHHDHLICLDCGK Unmodified 2573.1904 0.1903601 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 3 2 3 3 3 2 1 2 3 3 3 2 1 2 3 4 3 2 2 2 25.609 24.518 3;4;5 2.6062E-35 10994 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 221.92 221.92 5667800000 571840000 509320000 493170000 30084000 36022000 29692000 364200000 392050000 419510000 42287000 46758000 60180000 432120000 348810000 286480000 18687000 13071000 15045000 455740000 525250000 473820000 41060000 27079000 35521000 19202 503 18601 356712;356713;356714;356715;356716;356717;356718;356719;356720;356721;356722;356723;356724;356725;356726;356727;356728;356729;356730;356731;356732;356733;356734;356735;356736;356737;356738;356739;356740;356741;356742;356743;356744;356745;356746;356747;356748;356749;356750;356751;356752;356753;356754;356755;356756;356757;356758;356759;356760;356761;356762;356763;356764;356765;356766;356767;356768;356769;356770;356771 217452;217453;217454;217455;217456;217457;217458;217459;217460;217461;217462;217463;217464;217465;217466;217467;217468;217469;217470;217471;217472;217473;217474;217475;217476;217477;217478;217479;217480;217481;217482;217483;217484;217485;217486;217487;217488;217489;217490;217491;217492;217493;217494;217495;217496;217497;217498;217499;217500;217501 217473 49 SVFNSAGLEVR Unmodified 1177.6091 0.60913632 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.747 29.351 2 2.6544E-07 13695 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 161.28 145.64 3535600000 388470000 360470000 336430000 1548000 874280 1088600 315410000 292910000 307620000 0 0 0 222820000 232870000 203870000 0 0 0 280470000 318590000 272130000 0 0 0 19203 31 18602 356772;356773;356774;356775;356776;356777;356778;356779;356780;356781;356782;356783;356784;356785;356786 217502;217503;217504;217505;217506;217507;217508;217509;217510;217511;217512;217513;217514 217506 13 SVFPIQSYSGNSELQYVSYR Unmodified 2323.1121 0.11207623 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 3 3 3 2 2 7 9 8 2 2 2 5 4 6 47.554 46.47 2;3 5.7077E-56 17320 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 332.06 320.08 36503000000 222070000 189470000 164650000 20409000 19138000 25335000 155630000 177380000 157440000 2621600000 2804000000 2485900000 194290000 167540000 171600000 5850300000 5265000000 6435100000 205010000 204750000 200640000 2920200000 3168600000 2676500000 19204 463 18603 356787;356788;356789;356790;356791;356792;356793;356794;356795;356796;356797;356798;356799;356800;356801;356802;356803;356804;356805;356806;356807;356808;356809;356810;356811;356812;356813;356814;356815;356816;356817;356818;356819;356820;356821;356822;356823;356824;356825;356826;356827;356828;356829;356830;356831;356832;356833;356834;356835;356836;356837;356838;356839;356840;356841;356842;356843;356844;356845;356846;356847;356848;356849;356850;356851;356852;356853;356854;356855;356856;356857;356858;356859;356860;356861;356862;356863;356864;356865 217515;217516;217517;217518;217519;217520;217521;217522;217523;217524;217525;217526;217527;217528;217529;217530;217531;217532;217533;217534;217535;217536;217537;217538;217539;217540;217541;217542;217543;217544;217545;217546;217547;217548;217549;217550;217551;217552;217553;217554;217555;217556;217557;217558;217559;217560;217561;217562;217563;217564;217565;217566;217567;217568;217569;217570;217571;217572;217573;217574;217575;217576;217577;217578;217579;217580;217581;217582;217583;217584;217585;217586;217587;217588;217589;217590;217591;217592;217593;217594;217595;217596;217597;217598;217599;217600;217601;217602;217603;217604;217605;217606;217607;217608;217609;217610;217611;217612 217516 96 SVGASLSGYIAQTHGDQGLAADPIK Unmodified 2455.2343 0.23431663 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 1 1 2 2 38.045 36.355 2;3 1.4644E-50 17575 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 267.38 256.95 1104500000 236740000 181620000 166750000 1301300 1307000 1085400 92893000 90533000 91119000 0 0 0 48285000 45756000 37282000 0 0 0 0 53065000 56728000 0 0 0 19205 218 18604 356866;356867;356868;356869;356870;356871;356872;356873;356874;356875;356876;356877;356878;356879;356880;356881;356882;356883;356884;356885;356886;356887;356888 217613;217614;217615;217616;217617;217618;217619;217620;217621;217622;217623;217624;217625;217626;217627;217628 217623 16 SVGDEVITDK Unmodified 1061.5241 0.52406928 301 P0A720 tmk Thymidylate kinase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 17.657 18.37 2 0.0018588 6754 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 82.287 70.924 172230000 10952000 11773000 9797100 0 0 0 20150000 0 0 0 0 0 20832000 15736000 15262000 0 0 0 23617000 23461000 20654000 0 0 0 19206 301 18605 356889;356890;356891;356892;356893;356894;356895;356896;356897;356898 217629;217630;217631 217630 3 SVGEMAENQFR Oxidation (M) 1282.5612 0.56119985 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 9 9 9 1 1 2 9 10 11 2 2 3 9 10 8 19.213 19.201 2 1.938E-10 5111 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 195.17 172.43 1667400000 4272800 6692700 2685000 0 488290 578070 0 3129700 2859200 119970000 105370000 90888000 2273500 2713100 3574800 394620000 246210000 271970000 6873200 5189300 10902000 129540000 133840000 122760000 19207 463 18606 356899;356900;356901;356902;356903;356904;356905;356906;356907;356908;356909;356910;356911;356912;356913;356914;356915;356916;356917;356918;356919;356920;356921;356922;356923;356924;356925;356926;356927;356928;356929;356930;356931;356932;356933;356934;356935;356936;356937;356938;356939;356940;356941;356942;356943;356944;356945;356946;356947;356948;356949;356950;356951;356952;356953;356954;356955;356956;356957;356958;356959;356960;356961;356962;356963;356964;356965;356966;356967;356968;356969;356970;356971;356972;356973;356974;356975;356976;356977;356978;356979;356980;356981;356982;356983;356984;356985;356986;356987;356988;356989;356990;356991;356992;356993;356994;356995;356996;356997;356998;356999;357000;357001;357002 217632;217633;217634;217635;217636;217637;217638;217639;217640;217641;217642;217643;217644;217645;217646;217647;217648;217649;217650;217651;217652;217653;217654;217655;217656;217657;217658;217659;217660;217661;217662;217663;217664;217665;217666;217667;217668;217669;217670;217671;217672;217673;217674;217675;217676;217677;217678;217679;217680;217681;217682;217683;217684;217685;217686;217687;217688;217689;217690;217691;217692;217693;217694;217695;217696;217697;217698;217699;217700;217701;217702;217703;217704;217705;217706;217707;217708;217709;217710 217662 278 70 SVGEMAENQFR Unmodified 1266.5663 0.56628523 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 4 4 4 1 1 1 3 3 3 5 4 4 3 3 3 6 7 6 3 5 4 4 5 4 23.057 22.464 1;2;3 2.5138E-34 7129 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 280.03 260.25 44486000000 441310000 412370000 418550000 15742000 21402000 22554000 326950000 301340000 301460000 1569400000 2273600000 2401500000 407000000 352830000 354590000 8559800000 7217500000 7899100000 428600000 451970000 453200000 3117400000 3123600000 3613900000 19208 463 18606 357003;357004;357005;357006;357007;357008;357009;357010;357011;357012;357013;357014;357015;357016;357017;357018;357019;357020;357021;357022;357023;357024;357025;357026;357027;357028;357029;357030;357031;357032;357033;357034;357035;357036;357037;357038;357039;357040;357041;357042;357043;357044;357045;357046;357047;357048;357049;357050;357051;357052;357053;357054;357055;357056;357057;357058;357059;357060;357061;357062;357063;357064;357065;357066;357067;357068;357069;357070;357071;357072;357073;357074;357075;357076;357077;357078;357079;357080;357081;357082;357083;357084;357085;357086;357087;357088;357089;357090;357091;357092 217711;217712;217713;217714;217715;217716;217717;217718;217719;217720;217721;217722;217723;217724;217725;217726;217727;217728;217729;217730;217731;217732;217733;217734;217735;217736;217737;217738;217739;217740;217741;217742;217743;217744;217745;217746;217747;217748;217749;217750;217751;217752;217753;217754;217755;217756;217757;217758;217759;217760;217761;217762;217763;217764;217765;217766;217767;217768;217769;217770;217771 217716 50 SVGEVMAIGR Unmodified 1017.5277 0.52771487 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 1 20.462 20.145 2 1.5162E-06 10640 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 145.63 114.34 1005600000 270610000 258620000 233860000 1823800 0 1327100 0 5490200 4434600 0 1825900 874600 1246200 1786300 0 0 1193400 6050300 102250000 99789000 0 4474100 4742200 5213100 19209 65 18607 357093;357094;357095;357096;357097;357098;357099;357100;357101;357102;357103;357104;357105;357106;357107;357108;357109;357110;357111;357112;357113;357114;357115;357116;357117;357118 217772;217773;217774;217775;217776;217777;217778;217779;217780;217781;217782 217782 11 SVGGEVIEQPR Unmodified 1169.6041 0.60405094 1228 P23894 htpX Protease HtpX yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.136 18.597 2 1.9897E-07 6972 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.07 153.54 307810000 13189000 0 10695000 5154700 4241800 4732300 32583000 32424000 31019000 6093000 5907300 7028700 17898000 16006000 16454000 0 0 0 32577000 33070000 35356000 0 0 3383500 19210 1228 18608 357119;357120;357121;357122;357123;357124;357125;357126;357127;357128;357129;357130;357131;357132;357133;357134;357135;357136 217783;217784;217785;217786;217787;217788;217789;217790 217787 8 SVGKLEPGELYYFAGIDEAR Unmodified 2213.1004 0.10044891 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 45.252 43.879 3 3.6018E-10 15617 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 116.98 108.04 162940000 0 0 0 0 0 3317500 0 0 0 21252000 18513000 16532000 0 0 0 20925000 14427000 15714000 0 0 0 16302000 16148000 19810000 19211 272 18609 357137;357138;357139;357140;357141;357142;357143;357144;357145;357146;357147 217791;217792;217793;217794;217795;217796;217797;217798;217799;217800 217793 10 SVGTQVDDGTLEVR Unmodified 1474.7264 0.72635092 1692 P64596 yraP Uncharacterized protein YraP yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 25.157 24.028 2 4.0259E-15 10886 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 234.72 230.41 271360000 15242000 13978000 17129000 3100000 0 0 16383000 16025000 21206000 11965000 10055000 7982500 15696000 10196000 11586000 0 0 0 33765000 28477000 28230000 4869200 4476700 995680 19212 1692 18610 357148;357149;357150;357151;357152;357153;357154;357155;357156;357157;357158;357159;357160;357161;357162;357163;357164;357165;357166;357167 217801;217802;217803;217804;217805;217806 217803 6 SVGVMGDGR Oxidation (M) 892.40727 0.40726539 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.046 11.901 2 0.0014709 3067 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.783 79.522 272540000 0 0 0 0 0 0 40465000 31367000 31591000 0 0 0 26643000 25733000 24144000 0 0 0 33409000 27901000 31285000 0 0 0 19213 86 18611 357168;357169;357170;357171;357172;357173;357174;357175;357176 217807;217808;217809;217810;217811;217812 217810 34 6 SVGVMGDGR Unmodified 876.41235 0.41235077 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.222 14.789 2 7.9119E-05 4693 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.52 123.14 2455500000 189410000 172430000 154110000 0 0 0 162610000 174870000 167520000 985720 1262700 847820 246810000 235820000 197000000 743250 408210 0 248630000 256280000 243600000 1110400 1073900 0 19214 86 18611 357177;357178;357179;357180;357181;357182;357183;357184;357185;357186;357187;357188;357189;357190;357191;357192;357193;357194;357195 217813;217814;217815;217816;217817;217818;217819;217820;217821;217822;217823;217824 217816 11 SVIDTMQTR Unmodified 1049.5175 0.51754412 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 19.834 20.384 2 0.012126 7784 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.379 53.394 274290000 99973000 90585000 82003000 819680 908490 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19215 1914 18612 357196;357197;357198;357199;357200 217825;217826;217827 217827 1 SVIEALK Unmodified 758.4538 0.45380487 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 2 2 21.273 21.366 1;2 0.025379 8866 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 71.715 53.05 6416200000 381740000 390430000 274780000 2942600 3140400 3255500 446940000 510540000 511000000 7240400 5902800 5638300 537540000 446160000 455510000 2676600 0 1734500 737160000 840230000 836530000 4560300 5765700 4827600 19216 337 18613 357201;357202;357203;357204;357205;357206;357207;357208;357209;357210;357211;357212;357213;357214;357215;357216;357217;357218;357219;357220;357221;357222;357223;357224;357225;357226;357227;357228;357229;357230;357231;357232;357233;357234;357235;357236;357237;357238;357239;357240 217828;217829;217830;217831;217832;217833;217834;217835;217836;217837;217838;217839;217840;217841;217842 217828 14 SVIETATVPLAQQQADALLNVK Unmodified 2308.2638 0.26382585 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.191 48.772 3 4.1608E-15 24193 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 137.89 130.44 222960000 20452000 19723000 17840000 8850300 8898800 7696900 13751000 11736000 11945000 6873900 5372700 4326500 11788000 11576000 11125000 0 0 0 14756000 13839000 14027000 0 4177000 4209800 19217 1807 18614 357241;357242;357243;357244;357245;357246;357247;357248;357249;357250;357251;357252;357253;357254;357255;357256;357257;357258;357259;357260 217843;217844;217845;217846;217847;217848;217849;217850;217851;217852;217853;217854;217855;217856 217845 14 SVIETATVPLAQQQADALLNVK Acetyl (Protein N-term) 2350.2744 0.27439053 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 1 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.387 53.943 3 8.9065E-07 19825 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 99.86 96.807 188520000 31519000 28296000 27189000 18537000 16858000 14187000 7829700 5836800 7251800 2921900 0 0 8307500 6156800 6549100 0 0 0 3730700 0 0 0 3347200 0 19218 1807 18614 357261;357262;357263;357264;357265;357266;357267;357268;357269;357270;357271;357272;357273;357274;357275 217857;217858 217858 2 SVITPEIEQK Unmodified 1142.6183 0.61830402 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 22.158 22.08 2 4.0348E-05 8962 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.35 132.42 2071500000 457170000 407760000 397630000 0 0 0 311270000 2274900 325360000 0 0 0 48783000 44172000 0 0 0 0 0 0 77062000 0 0 0 19219 886 18615 357276;357277;357278;357279;357280;357281;357282;357283;357284 217859;217860;217861;217862;217863;217864;217865 217863 4 SVITVGPYLR Unmodified 1103.6339 0.63389451 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 3 2 1 1 1 3 3 3 1 2 1 3 3 3 35.798 34.275 2;3 8.3672E-09 11428 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 186.13 175.66 44796000000 310730000 275660000 237520000 19043000 19049000 19630000 273720000 247680000 256710000 2650800000 2381600000 2568200000 189970000 189490000 182440000 8806800000 7581200000 7896700000 328030000 335870000 305120000 3479200000 3088100000 3153200000 19220 458 18616 357285;357286;357287;357288;357289;357290;357291;357292;357293;357294;357295;357296;357297;357298;357299;357300;357301;357302;357303;357304;357305;357306;357307;357308;357309;357310;357311;357312;357313;357314;357315;357316;357317;357318;357319;357320;357321;357322;357323;357324;357325 217866;217867;217868;217869;217870;217871;217872;217873;217874;217875;217876;217877;217878;217879;217880;217881;217882;217883;217884;217885;217886;217887;217888;217889;217890;217891;217892;217893;217894;217895;217896;217897;217898;217899;217900;217901;217902;217903;217904;217905;217906;217907;217908;217909;217910;217911;217912;217913;217914;217915;217916;217917;217918;217919;217920;217921;217922;217923 217875 55 SVIVCNGYK Unmodified 1038.5168 0.51681584 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 16.003 16.87 2 0.003132 5610 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 82.671 73.808 56869000 8712500 10074000 8522000 0 0 0 0 0 0 0 0 0 8647500 7433800 5482300 0 0 0 7997300 0 0 0 0 0 19221 1172 18617 357326;357327;357328;357329;357330;357331;357332 217924;217925;217926;217927;217928;217929 217927 3 SVKEVIGQK Unmodified 986.57605 0.57604528 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 11.952 12.242 2 0.00095463 2668 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 107.29 93.371 15297000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4099200 5117600 6079700 19222 205 18618 357333;357334;357335 217930 217930 1 SVLAAWIADESK Unmodified 1288.6663 0.66631685 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 43.556 42.054 2 8.7215E-06 20325 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 130.98 115.83 95156000 22932000 18758000 16216000 0 0 0 0 10746000 9035400 0 0 0 9245500 0 8222700 0 0 0 0 0 0 0 0 0 19223 184 18619 357336;357337;357338;357339;357340;357341;357342;357343 217931;217932;217933;217934;217935;217936 217934 5 SVLAAWIADESKR Unmodified 1444.7674 0.76742787 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 2 2 2 1 2 2 36.557 34.944 2;3 4.2222E-07 16631 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 175.86 159.61 314620000 37498000 43155000 43034000 0 0 0 28541000 21548000 25881000 1093500 0 0 18762000 18935000 15798000 0 0 0 12384000 22091000 25902000 0 0 0 19224 184 18620 357344;357345;357346;357347;357348;357349;357350;357351;357352;357353;357354;357355;357356;357357;357358;357359;357360;357361;357362;357363;357364;357365;357366 217937;217938;217939;217940;217941;217942;217943;217944;217945;217946;217947;217948;217949 217946 13 SVLAELGLELPGGNKPEPR Unmodified 1975.0738 0.07384023 1181 P21499 rnr Ribonuclease R yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 43.899 42.509 3 2.288E-05 20654 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.087 81.698 107250000 29635000 25159000 24374000 0 0 0 11011000 5977000 5770400 0 0 0 0 0 0 0 821230 0 0 4498400 0 0 0 0 19225 1181 18621 357367;357368;357369;357370;357371;357372;357373;357374 217950;217951;217952 217951 3 SVLCIGGSWLVPADALEAGDYDR Unmodified 2463.174 0.17402456 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.929 53.456 2;3 1.7998E-63 26448 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 278.4 273.85 2696500000 171990000 143870000 169490000 0 0 0 258270000 255160000 220070000 0 0 0 280260000 222650000 257200000 0 0 0 240110000 255820000 221610000 0 0 0 19226 490 18622 357375;357376;357377;357378;357379;357380;357381;357382;357383;357384;357385;357386;357387;357388;357389;357390;357391;357392;357393;357394;357395;357396;357397;357398 217953;217954;217955;217956;217957;217958;217959;217960;217961;217962;217963;217964;217965;217966;217967;217968;217969 217957 12 SVLELIEK Unmodified 929.54335 0.54334816 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.911 35.39 2 0.01206 17004 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.738 38.579 815080000 211920000 196960000 187660000 9546300 7840300 8747900 10657000 11639000 13177000 4042600 4507000 0 19111000 20203000 20334000 2668200 1162300 2277100 25322000 27584000 29725000 0 0 0 19227 174 18623 357399;357400;357401;357402;357403;357404;357405;357406;357407;357408;357409;357410;357411;357412;357413;357414;357415;357416;357417;357418 217970;217971;217972 217971 3 SVLGIGQR Unmodified 828.48175 0.48175096 1690 P64585 yqjE Inner membrane protein YqjE yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.773 21.023 2 0.00074681 8513 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 124.89 62.89 595260000 24731000 25184000 18897000 4982500 5534300 3967200 114390000 107610000 121610000 16981000 17732000 15956000 14769000 13133000 13214000 0 0 0 26229000 22505000 27832000 0 0 0 19228 1690 18624 357419;357420;357421;357422;357423;357424;357425;357426;357427;357428;357429;357430;357431;357432;357433;357434;357435;357436 217973;217974;217975;217976 217975 4 SVLIFVR Unmodified 832.51707 0.51707383 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.318 35.538 2 0.0090549 17726 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.201 79.608 84780000 5251000 5472700 5418000 0 0 0 11834000 14341000 14697000 0 679570 664470 5353000 4834500 4635600 0 0 0 3734500 4782900 3080700 0 0 0 19229 169 18625 357437;357438;357439;357440;357441;357442;357443;357444;357445;357446;357447;357448;357449;357450 217977;217978;217979;217980;217981;217982;217983 217977 7 SVLPVIER Unmodified 911.54402 0.54401687 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.669 28.362 2 0.00074805 13068 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.83 101.69 261180000 59757000 61751000 56954000 0 0 0 15929000 18553000 16123000 0 0 0 3540700 4329100 4920900 0 0 0 5669300 7483900 6171500 0 0 0 19230 202 18626 357451;357452;357453;357454;357455;357456;357457;357458;357459;357460;357461;357462 217984;217985;217986 217985 3 SVLQVLHIPDER Unmodified 1404.7725 0.77251325 255 P0A6K3 def Peptide deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 2 2 2 1 1 1 1 1 1 2 2 2 1 1 37.297 35.489 2;3 1.5294E-08 17480 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 186.74 171.59 1280800000 127600000 111920000 117060000 3065200 3565700 2357300 118500000 121860000 131030000 1757100 1549100 1530400 69313000 62400000 62753000 0 0 0 125560000 108030000 108720000 0 857950 1392500 19231 255 18627 357463;357464;357465;357466;357467;357468;357469;357470;357471;357472;357473;357474;357475;357476;357477;357478;357479;357480;357481;357482;357483;357484;357485;357486;357487;357488;357489;357490;357491;357492;357493 217987;217988;217989;217990;217991;217992;217993;217994;217995;217996;217997;217998;217999;218000;218001;218002;218003;218004 217992 18 SVLSELDMMVGK Unmodified 1307.6465 0.64650938 1198 P22524 mukE Chromosome partition protein MukE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.166 49.92 2 3.2902E-06 24276 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 136.33 117.05 324840000 0 0 0 2815500 0 0 22538000 30947000 34801000 4574100 4370600 0 28685000 34214000 27593000 0 804010 0 43060000 40710000 39154000 4746800 5826800 0 19232 1198 18628 357494;357495;357496;357497;357498;357499;357500;357501;357502;357503;357504;357505;357506;357507;357508 218005;218006;218007;218008;218009;218010;218011;218012;218013;218014 218008 10 SVMAGVIIR Unmodified 944.54772 0.54772204 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.739 28.424 2 0.00026797 9621 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 120.65 91.307 986860000 19699000 16452000 10315000 12565000 11231000 13536000 94349000 88143000 81903000 36595000 34203000 35657000 69827000 72726000 80678000 8860600 7684500 8379600 84616000 88666000 82401000 0 0 28378000 19233 643 18629 357509;357510;357511;357512;357513;357514;357515;357516;357517;357518;357519;357520;357521;357522;357523;357524;357525;357526;357527;357528;357529;357530;357531;357532 218015;218016;218017;218018;218019;218020;218021;218022;218023;218024;218025;218026 218015 11 SVMDNMWLGR Unmodified 1207.5478 0.54779839 593 P0AAG8 mglA Galactose/methyl galactoside import ATP-binding protein MglA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 41.826 40.207 2 7.7366E-05 19494 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.57 121.2 32406000 9186600 7266400 8983900 1598700 1711500 1716200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1942500 0 0 0 19234 593 18630 357533;357534;357535;357536;357537;357538;357539 218027;218028 218028 2 SVMHEETQSFLDK Unmodified 1549.7083 0.70825802 1591 P46888 uspC Universal stress protein C yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 2 1 1 2 2 1 1 2 2 21.637 21.65 2;3 0.00027 8469 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 84.658 76.561 89547000 8357800 6784800 8369600 0 0 0 5200300 11335000 14234000 1055900 898350 0 7156300 7274500 4890800 0 0 0 2998100 5221300 5769800 0 0 0 19235 1591 18631 357540;357541;357542;357543;357544;357545;357546;357547;357548;357549;357550;357551;357552;357553;357554;357555;357556;357557;357558;357559;357560;357561;357562 218029;218030 218030 1 SVMIDASHLPFAQNISR Unmodified 1884.9516 0.9516166 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 42.352 40.603 2;3 4.7727E-31 19901 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 258.65 253.24 7126600000 508440000 492610000 471720000 47218000 50582000 47139000 769240000 782270000 847490000 106060000 115630000 107280000 456210000 419970000 409460000 9441200 11835000 8826300 445510000 466000000 486990000 22060000 21788000 22876000 19236 1045 18632 357563;357564;357565;357566;357567;357568;357569;357570;357571;357572;357573;357574;357575;357576;357577;357578;357579;357580;357581;357582;357583;357584;357585;357586;357587;357588;357589;357590;357591;357592;357593;357594;357595;357596;357597;357598;357599;357600;357601;357602;357603;357604;357605;357606;357607 218031;218032;218033;218034;218035;218036;218037;218038;218039;218040;218041;218042;218043;218044;218045;218046;218047;218048;218049;218050;218051;218052;218053;218054;218055;218056;218057;218058;218059;218060;218061;218062;218063;218064;218065;218066;218067;218068;218069;218070;218071 218061 40 SVMIDASHLPFAQNISR Oxidation (M) 1900.9465 0.94653123 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.354 37.502 3 1.9214E-05 18227 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 86.455 85.387 199560000 13405000 12436000 0 0 0 0 33275000 31765000 27996000 4196400 3266300 0 11978000 10147000 9220400 0 0 0 14366000 10740000 16769000 0 0 0 19237 1045 18632 357608;357609;357610;357611;357612;357613;357614;357615;357616;357617;357618;357619;357620 218072;218073;218074;218075;218076;218077;218078;218079;218080;218081;218082;218083;218084 218077 466 12 SVMLAAGDTFR Unmodified 1166.5754 0.57539335 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.535 29.939 2 9.9585E-06 11403 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 147.2 139.63 603730000 48525000 45136000 45546000 0 3308000 3798300 53456000 44693000 55479000 11839000 10035000 10040000 34621000 38285000 30868000 0 0 0 51410000 49771000 48463000 5630200 5784500 7039100 19238 1052 18633 357621;357622;357623;357624;357625;357626;357627;357628;357629;357630;357631;357632;357633;357634;357635;357636;357637;357638;357639;357640 218085;218086;218087;218088;218089;218090;218091;218092;218093;218094;218095;218096;218097;218098;218099;218100;218101;218102 218087 8 SVMLQSLNNIR Oxidation (M) 1289.6762 0.67617003 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 3 3 2 27.521 27.329 2 1.944E-05 9052 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 141.48 132.57 33987000 3999000 0 0 0 0 0 0 0 0 0 0 0 1982200 0 0 12859000 8565800 6581300 0 0 0 0 0 0 19239 729 18634 357641;357642;357643;357644;357645;357646;357647;357648;357649;357650 218103;218104;218105;218106;218107;218108 218103 379 4 SVMLQSLNNIR Unmodified 1273.6813 0.6812554 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 33.266 31.972 2;3 2.3769E-14 11151 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 214.12 200.75 2286100000 159830000 140490000 162990000 3048500 3328000 3672500 39935000 44287000 35480000 5301100 5039200 3617500 60243000 52905000 64243000 441700000 342360000 394010000 103350000 106750000 94853000 5562500 6656000 6413600 19240 729 18634 357651;357652;357653;357654;357655;357656;357657;357658;357659;357660;357661;357662;357663;357664;357665;357666;357667;357668;357669;357670;357671;357672;357673;357674;357675;357676;357677;357678;357679 218109;218110;218111;218112;218113;218114;218115;218116;218117;218118;218119;218120;218121;218122;218123;218124;218125;218126;218127;218128;218129;218130;218131;218132;218133 218109 25 SVMTFGISHHTDETGSDAWR Unmodified 2232.9858 0.98582986 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 28.108 26.97 3 8.2312E-39 11849 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 207.13 207.13 562490000 53595000 46454000 47785000 0 0 0 46106000 44643000 43824000 0 0 0 41062000 42777000 43678000 0 0 0 51577000 59189000 41800000 0 0 0 19241 715 18635 357680;357681;357682;357683;357684;357685;357686;357687;357688;357689;357690;357691;357692 218134;218135;218136;218137;218138;218139;218140;218141;218142;218143;218144;218145 218143 12 SVMTFGISHHTDETGSDAWREDGLVAR Unmodified 2973.3675 0.36753242 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.842 31.33 4 7.9667E-11 14676 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.33 117 320450000 37981000 24937000 20467000 955050 1192500 1614400 35563000 28334000 29951000 0 0 0 31703000 20151000 20752000 0 0 0 34193000 0 29599000 944790 2109600 0 19242 715 18636 357693;357694;357695;357696;357697;357698;357699;357700;357701;357702;357703;357704;357705;357706;357707;357708 218146 218146 1 SVMTLFSGPTDIYSHQVR Unmodified 2036.999 0.99896073 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 2 2 2 2 2 2 3 3 2 2 2 2 1 42.126 40.824 2;3;4 6.2545E-38 20406 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 257.95 255.97 5083600000 28154000 194200000 189770000 3048000 2096500 2455700 237820000 228350000 218970000 0 0 0 238240000 220280000 222720000 959690000 748180000 809540000 264150000 249750000 260600000 0 5584000 0 19243 712 18637 357709;357710;357711;357712;357713;357714;357715;357716;357717;357718;357719;357720;357721;357722;357723;357724;357725;357726;357727;357728;357729;357730;357731;357732;357733;357734;357735;357736;357737;357738;357739;357740;357741;357742;357743 218147;218148;218149;218150;218151;218152;218153;218154;218155;218156;218157;218158;218159;218160;218161;218162;218163;218164;218165;218166;218167;218168;218169;218170;218171;218172;218173;218174;218175;218176;218177 218157 31 SVMTLFSGPTDIYSHQVR Oxidation (M) 2052.9939 0.99387535 712 P0ACA3 sspA Stringent starvation protein A yes yes 0 1 0 By MS/MS By MS/MS 1 1 34.806 34.883 3 0.014952 11793 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 47.397 44.159 11151000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5428600 5722500 0 0 0 0 0 0 0 19244 712 18637 357744;357745 218178;218179 218179 375 0 SVNIFDK Unmodified 821.42832 0.42831841 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 1 1 1 1 1 1 1 23.64 22.829 2 0.008123 9727 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 89.142 71.375 1845600000 158520000 151690000 136420000 0 0 0 195660000 190480000 186550000 0 674030 0 132610000 107470000 96874000 0 0 0 154940000 163480000 170180000 0 0 0 19245 1137 18638 357746;357747;357748;357749;357750;357751;357752;357753;357754;357755;357756;357757;357758;357759;357760 218180;218181;218182;218183;218184;218185;218186;218187;218188;218189;218190 218186 11 SVNMEPK Unmodified 803.38474 0.38473903 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.85 12.518 2 0.02496 3425 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 72.138 61.954 534460000 0 0 0 15565000 18441000 16564000 0 0 0 8836900 7647700 0 0 0 69378000 0 0 0 120180000 123470000 118640000 11963000 10315000 13460000 19246 698 18639 357761;357762;357763;357764;357765;357766;357767;357768;357769;357770;357771;357772;357773;357774;357775;357776;357777 218191;218192;218193;218194;218195;218196;218197;218198;218199;218200;218201;218202;218203;218204 218194 14 SVNSMGLGIMGGGSLEEALTELETGR Unmodified 2607.252 0.25201688 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.545 54.07 3 2.882E-16 26540 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.7 143.87 228150000 6195400 0 0 4721200 0 3312800 14672000 18590000 11835000 9920400 8311000 9358100 20102000 16657000 21309000 0 0 0 27796000 22421000 24985000 7962000 0 0 19247 1427 18640 357778;357779;357780;357781;357782;357783;357784;357785;357786;357787;357788;357789;357790;357791;357792;357793 218205;218206;218207;218208 218208 1 SVNVGFSGGEK Unmodified 1079.5247 0.52473799 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 17.595 18.108 2 0.0028608 6752 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 68.847 46.267 181930000 0 0 0 0 0 0 30425000 34253000 31058000 1548400 1613200 0 11085000 11722000 9597000 0 0 0 17030000 16723000 16879000 0 0 0 19248 1910 18641 357794;357795;357796;357797;357798;357799;357800;357801;357802;357803;357804 218209;218210;218211;218212;218213;218214;218215;218216 218210 0 SVNYGPLGYIHNGK Unmodified 1517.7627 0.76267685 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 27.87 26.607 2;3 7.0481E-08 12443 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.71 130.41 369170000 0 0 0 0 0 0 49291000 58043000 52944000 0 0 911560 39554000 30374000 33265000 0 0 0 35644000 33304000 35836000 0 0 0 19249 40 18642 357805;357806;357807;357808;357809;357810;357811;357812;357813;357814;357815;357816;357817;357818;357819;357820;357821;357822;357823 218217;218218;218219;218220;218221;218222;218223;218224;218225;218226;218227;218228;218229;218230;218231 218221 15 SVPAIFLDR Unmodified 1016.5655 0.56548059 1659 P63228 gmhB D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 38.349 36.639 2 0.0005527 17733 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.29 88.512 251400000 23455000 26864000 26351000 0 0 0 24971000 25116000 28907000 0 0 0 14744000 14108000 12375000 0 0 0 18087000 18427000 16923000 1071700 0 0 19250 1659 18643 357824;357825;357826;357827;357828;357829;357830;357831;357832;357833;357834;357835;357836 218232;218233;218234;218235;218236;218237;218238;218239;218240;218241;218242;218243 218236 12 SVPLAEVQPGMLLR Unmodified 1508.8385 0.83848433 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.708 45.109 2 2.6005E-05 18535 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.549 89.395 77050000 0 4748100 6058100 1572800 1652600 1516800 11016000 8471500 10271000 6020800 6236500 6486400 3274500 1601800 2126600 0 0 0 0 3809500 2186300 0 0 0 19251 1980 18644 357837;357838;357839;357840;357841;357842;357843;357844;357845;357846;357847;357848;357849;357850;357851;357852 218244;218245;218246 218244 3 SVPVKDTEVVER Unmodified 1356.7249 0.72489436 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 14.36 14.974 2;3 1.8873E-05 4828 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142.83 129.24 5418100000 275210000 207140000 184540000 7283400 5170500 5813500 131230000 132650000 123210000 6245900 3383100 4104900 145240000 150610000 132370000 1263500000 1084700000 1111200000 147880000 140740000 151120000 1928400 1583900 1271300 19252 1247 18645 357853;357854;357855;357856;357857;357858;357859;357860;357861;357862;357863;357864;357865;357866;357867;357868;357869;357870;357871;357872;357873;357874;357875;357876;357877;357878;357879;357880;357881;357882;357883;357884;357885;357886;357887;357888;357889;357890;357891;357892;357893;357894;357895;357896;357897 218247;218248;218249;218250;218251;218252;218253;218254;218255;218256;218257;218258;218259;218260;218261;218262;218263;218264;218265;218266;218267;218268;218269;218270;218271;218272;218273;218274;218275 218266 21 SVPVKDTEVVERLEHTLR Unmodified 2106.1433 0.14331678 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 1 2 29.924 29.94 3;4;5 9.6566E-07 10347 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 98.035 89.848 137950000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38085000 54697000 45163000 0 0 0 0 0 0 19253 1247 18646 357898;357899;357900;357901;357902 218276;218277;218278;218279;218280 218276 4 SVPVQHPMYIDGQFVTWR Unmodified 2159.0622 0.062229686 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 40.416 38.745 2;3 1.5905E-22 18763 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 225.31 221.86 2846300000 728560000 646500000 574390000 2687200 2134300 2536900 79360000 74586000 70590000 0 0 0 66446000 61761000 57285000 0 0 0 164010000 166850000 148660000 0 0 0 19254 1264 18647 357903;357904;357905;357906;357907;357908;357909;357910;357911;357912;357913;357914;357915;357916;357917;357918;357919;357920;357921;357922;357923;357924;357925;357926;357927;357928;357929 218281;218282;218283;218284;218285;218286;218287;218288;218289;218290;218291;218292;218293;218294;218295;218296;218297 218292 17 SVQFGLSSLAQYIDDPEEVWFVK Unmodified 2656.3061 0.30608459 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.708 54.668 3 0.00019269 21915 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 71.527 68.253 140510000 3398900 0 5317400 0 0 0 4491500 0 7327300 0 0 0 0 7193500 0 24166000 23578000 24662000 0 0 0 11674000 8961900 19739000 19255 1448 18648 357930;357931;357932;357933;357934;357935;357936;357937;357938;357939;357940 218298;218299;218300 218300 3 SVQIEVR Unmodified 829.46577 0.46576654 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.812 17.353 2 0.0018451 4734 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 122.79 94.683 619700000 109650000 0 92553000 0 0 0 17489000 53853000 56268000 0 0 0 52112000 54875000 49572000 45612000 45841000 41871000 0 0 0 0 0 0 19256 297 18649 357941;357942;357943;357944;357945;357946;357947;357948;357949;357950;357951;357952 218301;218302;218303;218304;218305;218306;218307 218302 7 SVQNFFTTLSNTVK Unmodified 1584.8148 0.814772 1898 P77335 hlyE Hemolysin E, chromosomal yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 48.892 47.258 2 0.00061354 18859 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 83.617 73.664 35296000 2454500 0 0 0 0 0 8596000 9776000 6454000 4918000 0 3097700 0 0 0 0 0 0 0 0 0 0 0 0 19257 1898 18650 357953;357954;357955;357956;357957;357958 218308;218309 218308 1 SVQQIDWDLALIQK Unmodified 1655.8883 0.88827129 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.354 48.938 3 0.010763 23769 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 35.35 30.801 36933000 0 6220800 6800600 0 0 0 3229300 4676600 0 0 0 0 2815800 3737000 0 0 0 0 5186900 0 4266000 0 0 0 19258 1387 18651 357959;357960;357961;357962;357963;357964;357965;357966 218310 218310 1 SVQTVTGQPDVDQVVLDEAIK Unmodified 2240.1536 0.15360669 617 P0AAX8 ybiS Probable L,D-transpeptidase YbiS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 44.797 43.254 2;3 1.623E-21 21087 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 212.7 207.79 1254000000 98575000 99075000 100460000 615980 0 1475100 96499000 97574000 99939000 0 0 931150 97659000 91691000 98921000 0 0 0 129820000 121430000 119320000 0 0 0 19259 617 18652 357967;357968;357969;357970;357971;357972;357973;357974;357975;357976;357977;357978;357979;357980;357981;357982;357983;357984;357985;357986;357987;357988;357989;357990;357991;357992;357993 218311;218312;218313;218314;218315;218316;218317;218318;218319;218320;218321;218322;218323;218324 218317 14 SVSGSATGTPYELR Unmodified 1423.6943 0.69432251 1296 P27250 ahr Aldehyde reductase Ahr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 21.955 22.107 2 2.5607E-14 9035 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 184.24 165 344190000 84300000 81224000 69829000 0 0 0 0 52008000 0 0 0 0 20594000 18233000 18002000 0 0 0 0 0 0 0 0 0 19260 1296 18653 357994;357995;357996;357997;357998;357999;358000 218325;218326;218327;218328;218329;218330;218331 218326 5 SVSLGVAQPDAYK Unmodified 1333.6878 0.68778057 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.083 25.936 2 6.7592E-09 11723 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 166.97 162.36 504920000 38792000 35638000 38137000 0 0 0 46640000 46976000 49792000 0 0 0 44119000 34585000 44137000 0 0 0 45299000 41963000 38845000 0 0 0 19261 803 18654 358001;358002;358003;358004;358005;358006;358007;358008;358009;358010;358011;358012 218332;218333;218334;218335;218336;218337;218338;218339;218340;218341 218337 10 SVSLGVAQPDAYKDK Unmodified 1576.8097 0.80968662 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 1 21.394 21.669 2;3 8.1059E-15 8900 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 190.36 182.26 963300000 70832000 80474000 70225000 2460800 2265800 2188000 96633000 95665000 95060000 0 0 0 54544000 65030000 72593000 0 0 0 88808000 81717000 79963000 1537700 1666100 1634800 19262 803 18655 358013;358014;358015;358016;358017;358018;358019;358020;358021;358022;358023;358024;358025;358026;358027;358028;358029;358030;358031;358032;358033;358034;358035;358036;358037;358038;358039;358040;358041;358042;358043;358044 218342;218343;218344;218345;218346;218347;218348;218349;218350;218351;218352;218353;218354;218355;218356;218357;218358 218347 17 SVSQSDRDTLK Unmodified 1234.6153 0.61534391 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 10.701 11.414 2 0.00018306 2289 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 118.71 92.328 121820000 13603000 11735000 10609000 0 2731400 0 7400300 9941000 8178900 7619900 5498400 6018300 6699900 7660900 4696700 0 0 0 6175300 6803900 6444200 0 0 0 19263 658 18656 358045;358046;358047;358048;358049;358050;358051;358052;358053;358054;358055;358056;358057;358058;358059;358060;358061 218359;218360 218359 2 SVSSLAIMGLIDYPGR Unmodified 1677.876 0.87599205 592 P0AAG0 dppD Dipeptide transport ATP-binding protein DppD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 54.208 52.845 2 3.1038E-08 19285 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 146.07 139.84 35696000 12949000 10437000 0 3881600 3534700 4893700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19264 592 18657 358062;358063;358064;358065;358066 218361 218361 1 SVTAIDISSEK Unmodified 1148.5925 0.5924832 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.471 21.917 2 7.0522E-05 9573 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.48 118.33 1186700000 226350000 221290000 203650000 0 2110200 0 82730000 96399000 98479000 0 0 0 36128000 40764000 29332000 0 0 0 46459000 50637000 52402000 0 0 0 19265 553 18658 358067;358068;358069;358070;358071;358072;358073;358074;358075;358076;358077;358078;358079 218362;218363;218364;218365;218366;218367;218368;218369;218370;218371 218363 9 SVTDVDSGESVSIPTEDISEPMFHQGR Unmodified 2918.324 0.32399585 1839 P76235 yeaH UPF0229 protein YeaH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 42.256 40.482 3 0.014117 20051 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 42.03 39.654 59261000 15165000 18617000 9210100 0 0 0 0 9127500 7141200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19266 1839 18659 358080;358081;358082;358083;358084 218372 218372 1 SVTFCAR Unmodified 839.39597 0.39597242 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.12 15.773 2 0.014935 4425 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 82.263 73.53 696460000 4792700 79132000 69027000 1313700 1233100 1099900 101620000 103040000 92751000 11126000 9485800 8917800 0 0 0 0 0 0 71805000 71458000 69650000 0 0 0 19267 539 18660 358085;358086;358087;358088;358089;358090;358091;358092;358093;358094;358095;358096;358097;358098;358099 218373;218374 218374 2 SVTGMVAR Unmodified 819.42727 0.42727255 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.018 14.867 2 0.0030004 4788 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 95.793 52.746 290130000 78920000 62444000 59241000 0 0 0 8247700 9937200 8056500 0 0 0 10995000 0 10330000 0 0 0 14918000 14405000 12640000 0 0 0 19268 1107 18661 358100;358101;358102;358103;358104;358105;358106;358107;358108;358109;358110 218375;218376 218376 2 SVTGNFSR Unmodified 866.42463 0.42463001 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 12.816 13.67 2 0.086971 4136 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 58.604 57.14 47810000 0 0 0 0 0 0 18580000 0 18693000 0 0 0 10537000 0 0 0 0 0 0 0 0 0 0 0 19269 328 18662 358111;358112;358113 218377 218377 0 SVTSWADLWKPEYK Unmodified 1708.8461 0.84607213 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.462 41.947 2;3 4.7703E-08 20935 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 171.92 168.25 1381700000 141610000 124410000 112460000 0 0 0 70693000 73554000 70013000 0 0 0 129500000 145640000 128420000 0 0 0 141770000 128800000 114820000 0 0 0 19270 951 18663 358114;358115;358116;358117;358118;358119;358120;358121;358122;358123;358124;358125;358126;358127;358128;358129;358130;358131;358132;358133;358134;358135;358136;358137 218378;218379;218380;218381;218382;218383;218384;218385;218386;218387;218388;218389;218390;218391;218392;218393;218394;218395;218396;218397;218398;218399;218400 218379 23 SVVDDWYCAPLEGPR Unmodified 1762.7985 0.79847001 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 45.708 44.212 2 2.6672E-15 21531 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 195.85 194.6 371600000 45342000 35249000 33870000 0 0 0 14892000 17244000 19840000 0 0 1142400 27398000 29770000 25562000 0 0 0 37887000 44834000 38567000 0 0 0 19271 177 18664 358138;358139;358140;358141;358142;358143;358144;358145;358146;358147;358148;358149;358150 218401;218402;218403;218404;218405;218406;218407;218408;218409;218410;218411 218405 9 SVVDQINK Unmodified 901.4869 0.48689592 1482 P37648 yhjJ Protein YhjJ yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.308 16 2 0.0012277 5412 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.61 94.064 263430000 22369000 18651000 19386000 820300 0 720100 31590000 27636000 23867000 4683700 4377900 3269500 15072000 13947000 13812000 0 0 0 19366000 21963000 21895000 0 0 0 19272 1482 18665 358151;358152;358153;358154;358155;358156;358157;358158;358159;358160;358161;358162;358163;358164;358165;358166;358167 218412;218413;218414;218415;218416;218417;218418 218415 7 SVVNDTDGIVR Unmodified 1173.599 0.59896556 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.748 21.648 2 4.9836E-08 8761 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 176.79 153.36 1622200000 328280000 277050000 255530000 2576900 2418200 3650000 123420000 125840000 110350000 5474000 4544500 2487100 58426000 49513000 53967000 0 0 0 72340000 75302000 57087000 3482200 4956200 5451400 19273 553 18666 358168;358169;358170;358171;358172;358173;358174;358175;358176;358177;358178;358179;358180;358181;358182;358183;358184;358185;358186;358187;358188;358189 218419;218420;218421;218422;218423;218424;218425;218426;218427;218428;218429;218430;218431;218432;218433 218431 13 SVVNLIHGVR Unmodified 1092.6404 0.64037687 980 P0AG20 relA GTP pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 23.915 23.057 3 0.041829 9957 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 43.282 40.304 40415000 9285600 8622900 9170900 501350 473480 404960 0 5710700 0 0 0 0 0 0 2278700 0 0 0 0 3553100 0 412810 0 0 19274 980 18667 358190;358191;358192;358193;358194;358195;358196;358197;358198;358199 218434;218435;218436 218435 0 SVVNPQFK Unmodified 917.49707 0.49706667 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.484 17.964 2 0.012865 5183 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 74.415 59.64 95466000 0 0 0 2430200 2312400 1990900 8867200 10210000 9913100 5731100 4405700 4070900 6943600 7143500 6975400 0 0 0 8135000 10823000 0 0 2952900 2560900 19275 1047 18668 358200;358201;358202;358203;358204;358205;358206;358207;358208;358209;358210;358211;358212;358213;358214;358215 218437;218438;218439;218440;218441;218442;218443;218444;218445 218441 9 SVVNSSGK Unmodified 776.40283 0.40283194 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 7.8387 8.4316 2 0.00085144 1920 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 120.46 77.457 29248000000 76159000 77368000 83480000 12279000 12634000 4830400 0 0 0 1901600000 1818000000 1481100000 82142000 74586000 71038000 4204700000 6163100000 6118300000 90557000 77132000 70499000 2507500000 2193100000 2127700000 19276 458 18669 358216;358217;358218;358219;358220;358221;358222;358223;358224;358225;358226;358227;358228;358229;358230;358231;358232;358233;358234;358235;358236;358237 218446;218447;218448;218449;218450;218451;218452;218453;218454;218455;218456;218457;218458;218459;218460;218461;218462;218463;218464;218465 218451 20 SVVPPATNRPVVLR Unmodified 1503.8885 0.88854606 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 22.126 21.957 2;3 1.014E-05 8890 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 74.987 71.669 259490000 88699000 87099000 66826000 0 0 0 5498900 3623400 3549700 0 0 0 1734700 0 0 0 0 0 0 0 2463900 0 0 0 19277 1822 18670 358238;358239;358240;358241;358242;358243;358244;358245;358246;358247;358248 218466;218467;218468;218469;218470;218471;218472 218468 7 SVVPVADVLQGR Unmodified 1238.6983 0.69828568 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.169 36.364 2 1.237E-05 17608 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.27 123.07 1225700000 151980000 154540000 138810000 966810 0 0 90027000 90343000 94008000 979380 0 1025000 62374000 58603000 61419000 0 0 0 120800000 106460000 92564000 0 0 780050 19278 444 18671 358249;358250;358251;358252;358253;358254;358255;358256;358257;358258;358259;358260;358261;358262;358263;358264 218473;218474;218475;218476;218477;218478;218479;218480;218481;218482;218483;218484 218476 12 SVVQTVR Unmodified 787.4552 0.45520186 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.291 12.924 2 0.040351 2709 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 64.803 39.805 154140000 0 0 0 2434400 2589400 2403000 6581100 5306100 5351800 7378600 6024700 6421600 12524000 12085000 11635000 0 6291400 6529100 15093000 16860000 16220000 3457100 4381400 4573400 19279 73 18672 358265;358266;358267;358268;358269;358270;358271;358272;358273;358274;358275;358276;358277;358278;358279;358280;358281;358282;358283;358284 218485;218486;218487;218488;218489;218490 218488 3 SVVSCDTDFGVCAHCYGR Unmodified 2088.8452 0.84517898 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 3 2 2 3 2 24 19 23 2 4 2 36 33 32 2 2 3 22 22 26 37.006 35.846 2;3;4 1.5198E-67 9298 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 366.59 366.59 42388000000 344450000 327830000 283270000 16388000 16513000 20433000 236010000 220340000 204820000 2882500000 2344500000 2403000000 227090000 194680000 213900000 9004500000 7447900000 7184000000 315320000 337730000 309250000 2333900000 2152500000 3367500000 19280 458 18673 358285;358286;358287;358288;358289;358290;358291;358292;358293;358294;358295;358296;358297;358298;358299;358300;358301;358302;358303;358304;358305;358306;358307;358308;358309;358310;358311;358312;358313;358314;358315;358316;358317;358318;358319;358320;358321;358322;358323;358324;358325;358326;358327;358328;358329;358330;358331;358332;358333;358334;358335;358336;358337;358338;358339;358340;358341;358342;358343;358344;358345;358346;358347;358348;358349;358350;358351;358352;358353;358354;358355;358356;358357;358358;358359;358360;358361;358362;358363;358364;358365;358366;358367;358368;358369;358370;358371;358372;358373;358374;358375;358376;358377;358378;358379;358380;358381;358382;358383;358384;358385;358386;358387;358388;358389;358390;358391;358392;358393;358394;358395;358396;358397;358398;358399;358400;358401;358402;358403;358404;358405;358406;358407;358408;358409;358410;358411;358412;358413;358414;358415;358416;358417;358418;358419;358420;358421;358422;358423;358424;358425;358426;358427;358428;358429;358430;358431;358432;358433;358434;358435;358436;358437;358438;358439;358440;358441;358442;358443;358444;358445;358446;358447;358448;358449;358450;358451;358452;358453;358454;358455;358456;358457;358458;358459;358460;358461;358462;358463;358464;358465;358466;358467;358468;358469;358470;358471;358472;358473;358474;358475;358476;358477;358478;358479;358480;358481;358482;358483;358484;358485;358486;358487;358488;358489;358490;358491;358492;358493;358494;358495;358496;358497;358498;358499;358500;358501;358502;358503;358504;358505;358506;358507;358508;358509;358510;358511;358512;358513;358514;358515;358516;358517;358518;358519;358520;358521;358522;358523;358524;358525;358526;358527;358528;358529;358530;358531;358532;358533;358534;358535;358536;358537;358538;358539;358540;358541;358542;358543;358544;358545;358546;358547;358548;358549;358550;358551;358552;358553;358554;358555;358556;358557;358558;358559 218491;218492;218493;218494;218495;218496;218497;218498;218499;218500;218501;218502;218503;218504;218505;218506;218507;218508;218509;218510;218511;218512;218513;218514;218515;218516;218517;218518;218519;218520;218521;218522;218523;218524;218525;218526;218527;218528;218529;218530;218531;218532;218533;218534;218535;218536;218537;218538;218539;218540;218541;218542;218543;218544;218545;218546;218547;218548;218549;218550;218551;218552;218553;218554;218555;218556;218557;218558;218559;218560;218561;218562;218563;218564;218565;218566;218567;218568;218569;218570;218571;218572;218573;218574;218575;218576;218577;218578;218579;218580;218581;218582;218583;218584;218585;218586;218587;218588;218589;218590;218591;218592;218593;218594;218595;218596;218597;218598;218599;218600;218601;218602;218603;218604;218605;218606;218607;218608;218609;218610;218611;218612;218613;218614;218615;218616;218617;218618;218619;218620;218621;218622;218623;218624;218625;218626;218627;218628;218629;218630;218631;218632;218633;218634;218635;218636;218637;218638;218639;218640;218641;218642;218643;218644;218645;218646;218647;218648;218649;218650;218651;218652;218653;218654;218655;218656;218657;218658;218659;218660;218661;218662;218663;218664;218665;218666;218667;218668;218669;218670;218671;218672;218673;218674;218675;218676;218677;218678;218679;218680;218681;218682;218683;218684;218685;218686;218687;218688;218689;218690;218691;218692;218693;218694;218695;218696;218697;218698;218699;218700;218701;218702;218703;218704;218705;218706;218707;218708;218709;218710;218711;218712;218713;218714;218715;218716;218717;218718;218719;218720;218721 218653 205 SVVSGATPVMR Unmodified 1102.5805 0.58047873 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.472 20.693 2 1.5261E-05 7997 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.48 132.95 1916900000 166800000 176410000 149630000 7478300 7125000 8806300 0 0 228380000 0 9652100 9201000 0 188980000 164960000 0 1299500 1991100 263570000 259330000 249730000 7442600 8201100 7939200 19281 60 18674 358560;358561;358562;358563;358564;358565;358566;358567;358568;358569;358570;358571;358572;358573;358574;358575;358576;358577;358578 218722;218723;218724;218725;218726;218727;218728;218729;218730;218731 218730 4 SVVTVIDVFYK Unmodified 1268.7016 0.70163972 20 CON__Q5D862 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.632 49.221 2 0.05398 19732 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 50.292 49.602 21342000 0 0 0 986250 0 1346900 0 0 0 2757900 2164300 2749100 0 0 0 0 0 0 0 0 0 4061200 3880000 3396700 + 19282 20 18675 358579;358580;358581;358582;358583;358584;358585;358586 218732 218732 0 SVWHYVQ Unmodified 917.43955 0.43955179 1673 P64467 cnu OriC-binding nucleoid-associated protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.765 23.771 2 0.16258 10812 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 43 39.147 225060000 15282000 15399000 16767000 0 0 0 25556000 30131000 21909000 0 0 0 17856000 14689000 13539000 0 0 0 17699000 18629000 17598000 0 0 0 19283 1673 18676 358587;358588;358589;358590;358591;358592;358593;358594;358595;358596;358597;358598 218733 218733 1 SWAAGDATSR Unmodified 1020.4625 0.46247208 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 13.99 14.789 2 0.00023754 4625 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 117.81 115.11 355260000 124390000 129450000 101410000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19284 1888 18677 358599;358600;358601 218734 218734 1 SWDYLYEPDPK Unmodified 1411.6296 0.62959699 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.936 37.324 2 0.00010091 18493 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 119.68 117.53 1664700000 38689000 44840000 40761000 9091900 10402000 8952300 145010000 137020000 133690000 35449000 37718000 33261000 128130000 115440000 116660000 16822000 7884000 9313100 171750000 168450000 153810000 35601000 33871000 32043000 19285 644 18678 358602;358603;358604;358605;358606;358607;358608;358609;358610;358611;358612;358613;358614;358615;358616;358617;358618;358619;358620;358621;358622;358623;358624;358625 218735;218736;218737;218738;218739;218740;218741;218742;218743;218744;218745;218746;218747;218748;218749;218750;218751;218752;218753;218754;218755;218756;218757;218758 218740 24 SWGSDAK Unmodified 749.33442 0.33441802 800 P0ADQ7 ygaM Uncharacterized protein YgaM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 11.533 12.194 2 0.0092255 2416 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 88.029 88.029 381640000 0 0 0 22718000 19481000 18473000 0 140020000 130060000 18053000 17936000 14895000 0 0 0 0 0 0 0 0 0 0 0 0 19286 800 18679 358626;358627;358628;358629;358630;358631;358632;358633 218759;218760;218761 218760 3 SWGSDAKGEAEAAR Unmodified 1433.6535 0.65352033 800 P0ADQ7 ygaM Uncharacterized protein YgaM yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 13.631 14.079 2;3 1.5195E-10 3114 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 161.94 161.94 487230000 0 0 0 97141000 98843000 23377000 0 0 0 79520000 69705000 66566000 0 0 0 0 1358300 1889200 0 0 0 18623000 15318000 14888000 19287 800 18680 358634;358635;358636;358637;358638;358639;358640;358641;358642;358643;358644;358645;358646;358647;358648;358649;358650;358651;358652;358653 218762;218763;218764;218765;218766;218767;218768;218769;218770;218771;218772;218773;218774 218774 13 SWLMAVVGAEYILR Unmodified 1606.8541 0.85413439 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.368 53.91 2 0.047628 19855 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 47.559 43.914 139090000 9532100 10713000 8938300 5452100 2869400 4065500 7140600 10320000 8838800 3547300 2181800 0 8212200 8459600 7911700 0 0 0 14794000 13025000 13084000 0 0 0 19288 1146 18681 358654;358655;358656;358657;358658;358659;358660;358661;358662;358663;358664;358665;358666;358667;358668;358669;358670 218775;218776 218775 0 SWLVDYFK Unmodified 1056.528 0.52803245 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.215 47.938 2 0.005333 23309 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 86.794 84.091 712930000 22662000 23919000 23036000 8073200 6673900 8046300 66653000 72135000 66503000 60619000 66158000 59045000 28776000 27393000 22352000 4660500 0 3270400 31782000 36693000 27627000 15489000 17328000 14038000 19289 122 18682 358671;358672;358673;358674;358675;358676;358677;358678;358679;358680;358681;358682;358683;358684;358685;358686;358687;358688;358689;358690;358691;358692;358693;358694 218777;218778;218779;218780;218781;218782;218783;218784;218785;218786;218787;218788;218789;218790;218791;218792;218793;218794 218785 18 SWPEFIGTTSGYSYIKPK Unmodified 2060.0255 0.025493054 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 42.01 40.298 3 1.2027E-06 20157 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.882 94.04 254660000 0 4629500 6328700 0 0 0 25595000 27948000 23423000 0 0 0 34634000 34698000 30171000 0 0 0 19526000 24433000 23277000 0 0 0 19290 1947 18683 358695;358696;358697;358698;358699;358700;358701;358702;358703;358704;358705 218795;218796;218797;218798;218799;218800;218801;218802;218803 218795 9 SWPGVQSFAGR Unmodified 1190.5833 0.58325592 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 34.207 32.809 2 8.8048E-05 15454 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 122.13 118.55 227200000 34821000 34936000 41729000 0 0 0 0 17452000 13924000 0 0 0 10789000 9319300 12555000 0 0 0 17386000 19025000 15267000 0 0 0 19291 1788 18684 358706;358707;358708;358709;358710;358711;358712;358713;358714;358715;358716 218804;218805;218806;218807;218808;218809;218810 218807 4 SWQSLLTQLGEITGHEK Unmodified 1925.9847 0.98469087 870 P0AEL6 fepB Ferrienterobactin-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.375 51.935 3 1.2273E-06 25411 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.666 92.886 240730000 22377000 23154000 27433000 0 0 0 17165000 13401000 11349000 0 0 0 16930000 18723000 15551000 0 0 0 20809000 28054000 25779000 0 0 0 19292 870 18685 358717;358718;358719;358720;358721;358722;358723;358724;358725;358726;358727;358728 218811;218812;218813;218814;218815;218816;218817;218818;218819;218820;218821 218814 11 SWSFGEVK Unmodified 938.44978 0.44978213 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 4 3 3 1 1 1 3 3 3 30.566 29.303 2 0.0081036 12859 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 82.241 69.192 29652000000 302470000 272250000 267770000 12276000 8013500 11469000 201230000 216050000 205910000 1934800000 1781900000 1508600000 214470000 208150000 194440000 5901000000 4233200000 4866200000 265400000 294360000 284750000 2320800000 2247100000 1899500000 19293 458 18686 358729;358730;358731;358732;358733;358734;358735;358736;358737;358738;358739;358740;358741;358742;358743;358744;358745;358746;358747;358748;358749;358750;358751;358752;358753;358754;358755;358756;358757;358758;358759;358760;358761;358762;358763;358764;358765;358766;358767 218822;218823;218824;218825;218826;218827;218828;218829;218830;218831;218832;218833;218834;218835;218836;218837;218838;218839;218840;218841;218842;218843;218844;218845;218846;218847;218848;218849;218850;218851;218852 218850 30 SWSFGEVKKPETINYR Unmodified 1939.9792 0.97921156 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 3 3 3 3 3 3 2 3 27.561 26.356 2;3;4 1.4196E-38 8562 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 286.73 283.41 8017400000 0 0 0 4620000 3159000 2054800 0 0 0 286060000 332650000 271190000 0 0 0 1902500000 1652400000 1906200000 0 0 0 628660000 360120000 667800000 19294 458 18687 358768;358769;358770;358771;358772;358773;358774;358775;358776;358777;358778;358779;358780;358781;358782;358783;358784;358785;358786;358787;358788;358789;358790;358791;358792;358793;358794;358795;358796;358797 218853;218854;218855;218856;218857;218858;218859;218860;218861;218862;218863;218864;218865;218866;218867;218868;218869;218870;218871;218872;218873;218874;218875 218855 23 SWSQGHLQINHHAK Unmodified 1641.8124 0.81242101 1342 P30178 ybiC Uncharacterized oxidoreductase YbiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.748 12.505 3 0.0085728 3446 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 50.897 38.477 235970000 44523000 37091000 34989000 0 0 0 16780000 26249000 18773000 712170 0 0 9646800 6225300 0 0 0 0 13348000 14231000 13403000 0 0 0 19295 1342 18688 358798;358799;358800;358801;358802;358803;358804;358805;358806;358807;358808;358809 218876;218877;218878 218878 3 SWTGLISTGITYK Unmodified 1425.7504 0.75038083 479 P0A908 mipA MltA-interacting protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 44.526 42.655 2 0.053044 17447 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 46.592 45.209 30570000 0 0 0 0 0 0 0 0 0 3818700 3560200 0 7078500 0 0 0 0 0 9209200 6903500 0 0 0 0 19296 479 18689 358810;358811;358812;358813;358814 218879 218879 0 SWVDEAEQHDE Unmodified 1343.5266 0.52658848 1359 P31119 aas Bifunctional protein Aas;2-acylglycerophosphoethanolamine acyltransferase;Acyl-[acyl-carrier-protein] synthetase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 26.065 24.774 2 0.011453 11137 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 63.216 63.216 32347000 0 0 0 0 0 0 3297300 3933100 3442200 0 1563100 1179700 3754900 2784600 0 0 0 0 2726100 4879700 4786400 0 0 0 19297 1359 18690 358815;358816;358817;358818;358819;358820;358821;358822;358823;358824 218880 218880 0 SWYNQMMDSAEK Unmodified 1488.6014 0.6013501 110 P05458 ptrA Protease 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.541 34.984 2 0.0001001 16770 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.309 94.309 95028000 9738800 7869800 6983700 0 0 0 5117400 4013900 4559900 0 0 0 6729800 10947000 8409400 0 0 0 8812800 12794000 9052100 0 0 0 19298 110 18691 358825;358826;358827;358828;358829;358830;358831;358832;358833;358834;358835;358836 218881;218882;218883;218884;218885;218886;218887 218883 3 SYCGFIAIVGRPNVGK Unmodified 1736.9032 0.90320985 125 P06616 era GTPase Era yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.182 34.404 3 0.0069418 13697 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 37.555 36.068 182850000 21011000 15051000 16490000 1258300 1386600 1430400 14772000 13173000 11295000 4496700 3087500 3793000 7459600 10468000 7432500 0 0 0 13504000 12197000 17520000 2389800 3209400 1430200 19299 125 18692 358837;358838;358839;358840;358841;358842;358843;358844;358845;358846;358847;358848;358849;358850;358851;358852;358853;358854;358855;358856;358857 218888;218889 218889 2 SYDLNLR Unmodified 879.44503 0.4450311 1602 P52095 ldcC Lysine decarboxylase, constitutive yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 24.461 23.519 2 0.0021148 10647 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.01 87.591 99751000 13047000 10624000 10209000 0 0 0 14608000 23354000 20167000 0 0 0 4238200 3504600 0 0 0 0 0 0 0 0 0 0 19300 1602 18693 358858;358859;358860;358861;358862;358863;358864;358865 218890;218891;218892;218893;218894 218891 5 SYEEELAK Unmodified 967.44984 0.44984171 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.646 16.453 2 0.0023006 5584 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 101.64 88.655 1268000000 25062000 25157000 19324000 0 0 0 124980000 117520000 116510000 0 0 0 147490000 114650000 120320000 0 0 0 159340000 157760000 139890000 0 0 0 19301 895 18694 358866;358867;358868;358869;358870;358871;358872;358873;358874;358875;358876;358877 218895;218896;218897;218898;218899;218900;218901;218902;218903;218904;218905 218899 11 SYEEELAKDPR Unmodified 1335.6307 0.63065962 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 2 1 15.985 16.721 2;3 5.3841E-07 6037 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 157.96 157.96 7555800000 147020000 152570000 127460000 4866000 2102200 0 706310000 815570000 820620000 0 0 0 703090000 635000000 554650000 0 0 1161600 1061700000 868100000 938790000 10784000 6007600 0 19302 895 18695 358878;358879;358880;358881;358882;358883;358884;358885;358886;358887;358888;358889;358890;358891;358892;358893;358894;358895;358896;358897;358898;358899;358900;358901;358902;358903;358904;358905;358906;358907 218906;218907;218908;218909;218910;218911;218912;218913;218914;218915;218916;218917;218918;218919;218920 218907 15 SYFIPPPQMK Unmodified 1206.6107 0.61071622 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 34.146 32.766 2 0.015301 15686 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 63.565 57.261 85587000 0 11256000 9980400 0 0 0 0 8548900 0 0 0 0 7908400 7863800 5862600 0 0 0 10753000 11807000 11607000 0 0 0 19303 1348 18696 358908;358909;358910;358911;358912;358913;358914;358915;358916 218921;218922;218923;218924;218925;218926;218927;218928;218929 218923 0 SYGEAWASYPVLK Unmodified 1469.7191 0.7190807 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.075 39.18 2 1.5947E-07 19437 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.24 150.35 211910000 0 16117000 16444000 0 0 0 23882000 27605000 23889000 6380700 6098300 7105500 14842000 11486000 11476000 0 0 0 15410000 13958000 14420000 2794400 0 0 19304 1765 18697 358917;358918;358919;358920;358921;358922;358923;358924;358925;358926;358927;358928;358929;358930;358931 218930;218931;218932;218933;218934;218935;218936;218937 218933 8 SYGLAVAALAGVPK Unmodified 1315.75 0.7499869 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.844 42.304 2 1.9201E-05 20940 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.254 90.019 156850000 13405000 0 10988000 654250 0 0 14016000 15300000 14898000 0 0 0 12721000 10362000 10452000 0 0 0 20219000 17166000 16665000 0 0 0 19305 1230 18698 358932;358933;358934;358935;358936;358937;358938;358939;358940;358941;358942;358943 218938;218939;218940;218941;218942 218940 5 SYGVGNAPQNK Unmodified 1133.5465 0.54653606 492 P0A962 ansA L-asparaginase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.099 12.939 2 1.5345E-05 3450 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 141.39 134.67 251900000 31941000 31790000 0 0 0 0 23053000 24230000 18579000 0 0 0 23712000 18072000 16594000 0 0 0 21114000 20951000 21863000 0 0 0 19306 492 18699 358944;358945;358946;358947;358948;358949;358950;358951;358952;358953;358954 218943;218944;218945;218946;218947;218948;218949;218950 218950 7 SYIDDEYMGHK Unmodified 1356.5656 0.56561652 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 20.259 20.656 2;3 4.292E-05 8195 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 130.75 130.25 471310000 39440000 38904000 37527000 0 0 0 47007000 43475000 45441000 0 0 0 40631000 37308000 34150000 0 0 0 37932000 35495000 33994000 0 0 0 19307 880 18700 358955;358956;358957;358958;358959;358960;358961;358962;358963;358964;358965;358966;358967;358968;358969;358970;358971;358972;358973;358974;358975;358976;358977;358978 218951;218952;218953;218954;218955;218956;218957;218958;218959;218960;218961;218962;218963;218964;218965;218966;218967;218968;218969 218954 18 SYITGEFGHMR Unmodified 1296.5921 0.59210605 1798 P75959 nagK N-acetyl-D-glucosamine kinase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 2 1 1 2 2 2 1 2 23.865 22.995 2;3 0.013687 9991 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 54.343 52.204 158560000 19667000 17174000 12549000 0 0 0 11394000 10557000 9881000 0 0 0 9344100 12939000 11808000 0 0 0 18056000 9285500 15901000 0 0 0 19308 1798 18701 358979;358980;358981;358982;358983;358984;358985;358986;358987;358988;358989;358990;358991;358992;358993;358994;358995;358996;358997;358998 218970;218971;218972;218973;218974 218971 1 SYIVYPR Unmodified 896.4756 0.47560295 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 24.137 23.024 2 0.0018969 10335 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 121.87 107.81 308980000 0 0 0 0 0 0 84436000 71150000 81946000 2631100 1694000 1585200 16224000 19409000 18478000 0 0 0 6090200 0 5333500 0 0 0 19309 1276 18702 358999;359000;359001;359002;359003;359004;359005;359006;359007;359008;359009 218975;218976;218977;218978 218976 4 SYLQTYPFIK Unmodified 1258.6598 0.6597749 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.207 38.533 2 0.00034384 19078 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 109.21 101.57 1152600000 127560000 121650000 113270000 0 649690 502220 138930000 125300000 131400000 0 0 0 53072000 56021000 45684000 0 0 0 80356000 81438000 76780000 0 0 0 19310 1154 18703 359010;359011;359012;359013;359014;359015;359016;359017;359018;359019;359020;359021;359022;359023 218979;218980;218981;218982 218979 4 SYMVTNGTSTANK Unmodified 1372.6293 0.62927941 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 13.891 14.807 2 0.00049148 4833 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 79.693 75.081 14222000 0 0 0 0 0 0 3891800 4217900 0 0 0 0 2298400 1735800 2077800 0 0 0 0 0 0 0 0 0 19311 520 18704 359024;359025;359026;359027;359028 218983;218984 218983 2 SYMYDFIQR Unmodified 1221.5488 0.54884425 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.375 36.763 2 6.0346E-05 17836 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 146.35 146.35 361190000 27987000 30756000 30567000 2149300 1599900 1980000 5484300 5358900 6636400 3762500 4101200 3669400 7793100 7764600 7124200 80344000 49385000 55170000 8345700 6138700 7897500 2773300 2414900 1983500 19312 515 18705 359029;359030;359031;359032;359033;359034;359035;359036;359037;359038;359039;359040;359041;359042;359043;359044;359045;359046;359047;359048;359049;359050;359051;359052 218985;218986;218987;218988;218989;218990;218991;218992;218993;218994;218995;218996;218997;218998;218999;219000;219001 218996 17 SYNMAGWR Unmodified 983.42834 0.42833518 1905 P77434 alaC Glutamate-pyruvate aminotransferase AlaC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.267 23.322 2 0.08965 10220 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.194 57.108 35324000 6789700 6562000 5201900 0 0 0 3527900 3040800 3487300 0 0 0 0 0 1754700 0 0 0 2834500 2125100 0 0 0 0 19313 1905 18706 359053;359054;359055;359056;359057;359058;359059;359060;359061 219002 219002 0 SYNWDMMHK Unmodified 1210.4899 0.48994916 906 P0AF24 nagD Ribonucleotide monophosphatase NagD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 23.605 22.863 2;3 0.00058912 9440 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 106.36 105.73 402990000 40223000 33499000 30892000 13945000 12034000 11280000 33276000 34297000 28987000 0 0 0 20218000 25881000 24087000 0 0 0 32128000 32656000 29586000 0 0 0 19314 906 18707 359062;359063;359064;359065;359066;359067;359068;359069;359070;359071;359072;359073;359074;359075;359076;359077;359078;359079;359080;359081;359082;359083;359084;359085;359086;359087;359088;359089;359090;359091 219003;219004;219005;219006;219007;219008;219009;219010;219011;219012;219013;219014;219015;219016;219017;219018;219019;219020;219021;219022;219023;219024;219025;219026;219027 219025 24 SYPITIASGLFNEPASFLPLK Unmodified 2264.2093 0.20927108 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.286 53.812 2 6.7258E-10 26488 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.18 151.89 219840000 21605000 24090000 21748000 0 0 0 15853000 15272000 16089000 0 0 0 13914000 13145000 17343000 0 0 0 17377000 23297000 20106000 0 0 0 19315 164 18708 359092;359093;359094;359095;359096;359097;359098;359099;359100;359101;359102;359103 219028;219029;219030;219031;219032;219033;219034 219033 7 SYPLDIHNVQDHLK Unmodified 1677.8475 0.84746911 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 2 3 3 3 1 1 1 3 3 2 27.682 26.443 2;3;4 6.5475E-11 12448 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 201.66 199.24 6145700000 1588700000 1500200000 1370200000 39036000 40716000 34339000 382170000 347090000 369450000 46161000 50649000 51427000 37610000 45170000 32140000 1535300 1415000 1681500 84554000 73855000 47630000 0 0 0 19316 677 18709 359104;359105;359106;359107;359108;359109;359110;359111;359112;359113;359114;359115;359116;359117;359118;359119;359120;359121;359122;359123;359124;359125;359126;359127;359128;359129;359130;359131;359132;359133;359134;359135;359136;359137;359138;359139;359140;359141;359142;359143;359144;359145;359146;359147;359148;359149;359150;359151;359152;359153;359154;359155;359156;359157;359158 219035;219036;219037;219038;219039;219040;219041;219042;219043;219044;219045;219046;219047;219048;219049;219050;219051;219052;219053;219054;219055;219056;219057;219058;219059;219060;219061;219062;219063;219064;219065;219066;219067;219068 219045 34 SYQCETIFVDPPR Unmodified 1610.7399 0.73989249 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 2 1 1 35.14 33.691 2 4.4276E-05 16154 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 118.9 112.66 133210000 10094000 8921300 7051400 0 0 0 8857900 7223400 8334500 0 0 0 11246000 8931600 7896200 0 0 0 21456000 14414000 18781000 0 0 0 19317 1203 18710 359159;359160;359161;359162;359163;359164;359165;359166;359167;359168;359169;359170;359171;359172 219069;219070;219071;219072;219073;219074;219075;219076 219071 8 SYQGTLILISHDRDFLDPIVDK Unmodified 2544.3224 0.32240336 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.529 47.222 4 0.10475 23025 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 28.076 25.463 100910000 8545400 10877000 10910000 0 0 0 7710700 8945600 0 0 0 0 7142600 6982800 5903300 0 0 0 11339000 10886000 11665000 0 0 0 19318 1664 18711 359173;359174;359175;359176;359177;359178;359179;359180;359181;359182;359183 219077;219078 219077 2 SYQLTAEDFGLTPYHQEQLAGGTPEENR Unmodified 3150.453 0.45303619 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 41.822 40.283 3 4.0869E-41 19594 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 206.03 199.8 43091000 13574000 15022000 14496000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19319 48 18712 359184;359185;359186 219079;219080;219081 219081 3 SYQLTAEDFGLTPYHQEQLAGGTPEENRDILTR Unmodified 3748.7969 0.79689669 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 42.588 40.946 4 1.9568E-25 20121 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 172.52 168.7 85437000 42711000 0 32148000 4516600 6061300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19320 48 18713 359187;359188;359189;359190 219082;219083;219084;219085 219084 4 SYQMNPMNR Unmodified 1139.4852 0.48519813 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.632 19.197 2 0.00015189 7249 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.77 130.77 340470000 26891000 28550000 24026000 0 0 0 28210000 30331000 25777000 0 0 0 27683000 24025000 24052000 0 0 0 31670000 33316000 35942000 0 0 0 19321 715 18714 359191;359192;359193;359194;359195;359196;359197;359198;359199;359200;359201;359202 219086;219087;219088;219089;219090;219091;219092;219093 219088 8 SYQVLAR Unmodified 835.4552 0.45520186 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 16.713 17.371 2 0.025832 6210 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 71.258 36.152 113340000 8934500 7955800 8361100 0 0 0 0 18211000 15567000 0 0 0 7004000 7782900 6418500 0 627690 482980 12945000 9505700 9547500 0 0 0 19322 127 18715 359203;359204;359205;359206;359207;359208;359209;359210;359211;359212;359213;359214;359215 219094;219095;219096;219097;219098;219099 219094 6 SYTCNQFSLSSERPMIGFCPGAEFGPAK Unmodified 3137.4045 0.40451156 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.398 44.341 3 3.5663E-11 17822 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 125.78 125.03 31688000 0 0 0 0 0 0 0 0 0 6392500 4802900 8386500 0 0 0 0 0 0 4224700 0 0 4459800 3421900 0 19323 1488 18716 359216;359217;359218;359219;359220;359221 219100;219101;219102 219101 3 SYTHELIAR Unmodified 1088.5615 0.56145784 1201 P22634 murI Glutamate racemase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 14.42 15.172 2 0.0060662 4903 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.642 78.071 77530000 7982600 6130400 5927600 0 0 0 4122900 7136500 7249700 0 0 0 7052200 2458300 0 0 0 0 9253400 9692400 10524000 0 0 0 19324 1201 18717 359222;359223;359224;359225;359226;359227;359228;359229;359230;359231;359232 219103;219104;219105 219104 1 SYTHIIR Unmodified 888.48175 0.48175096 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.537 13.365 2 0.075336 4024 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 67.344 57.16 540430000 40888000 62224000 59811000 0 0 0 58325000 67088000 57483000 0 0 0 49770000 42169000 41109000 0 0 0 0 61559000 0 0 0 0 19325 1759 18718 359233;359234;359235;359236;359237;359238;359239;359240;359241;359242 219106 219106 0 SYTLPSLPYAYDALEPHFDK Unmodified 2326.1158 0.11576462 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 51.378 50.125 2;3 1.1837E-29 24787 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 203.85 201.22 11744000000 1501800000 1477300000 1152100000 0 0 1077400 636590000 643230000 647620000 0 0 0 669420000 484910000 625980000 0 0 0 1315100000 1334200000 1247600000 0 3790400 3468200 19326 28 18719 359243;359244;359245;359246;359247;359248;359249;359250;359251;359252;359253;359254;359255;359256;359257;359258;359259;359260;359261;359262;359263;359264;359265;359266;359267;359268;359269 219107;219108;219109;219110;219111;219112;219113;219114;219115;219116;219117;219118;219119;219120;219121;219122;219123;219124;219125;219126;219127;219128;219129;219130 219108 24 SYTLPSLPYAYDALEPHFDKQTMEIHHTK Unmodified 3431.6496 0.64962751 28 P00448 sodA Superoxide dismutase [Mn] yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.804 40.09 5 3.3918E-08 19511 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.45 105.68 516750000 101660000 61755000 63316000 3261000 1949800 2119700 38486000 36567000 39898000 0 0 0 0 14551000 18011000 0 0 0 51551000 39816000 43810000 0 0 0 19327 28 18720 359270;359271;359272;359273;359274;359275;359276;359277;359278;359279;359280;359281;359282;359283 219131;219132;219133;219134;219135;219136 219133 6 SYVDCQDKVDELYELQEEWTAK Unmodified 2747.2272 0.22724192 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.218 47.853 3 3.262E-15 23545 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 142.93 140.1 243340000 17535000 21727000 19870000 0 0 0 36189000 32320000 34939000 0 0 0 19110000 15482000 17098000 0 0 0 10444000 9392400 9236500 0 0 0 19328 709 18721 359284;359285;359286;359287;359288;359289;359290;359291;359292;359293;359294;359295 219137;219138;219139;219140;219141;219142;219143;219144;219145;219146 219139 10 SYVLDDSR Unmodified 953.44543 0.44542503 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 17.471 18.288 2 0.0010066 6433 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 113.89 78.533 348920000 0 0 96847000 0 0 0 0 0 0 0 0 0 128010000 124060000 0 0 0 0 0 0 0 0 0 0 19329 149 18722 359296;359297;359298 219147;219148 219148 2 SYVYLDESK Unmodified 1102.5183 0.51825563 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.76 22.23 2 0.0001886 9108 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 127.56 121.11 231830000 11914000 8522800 8301900 0 0 0 20754000 18132000 17999000 0 0 0 24372000 22399000 25164000 0 0 0 24311000 23289000 26673000 0 0 0 19330 180 18723 359299;359300;359301;359302;359303;359304;359305;359306;359307;359308;359309;359310 219149;219150;219151;219152;219153;219154;219155;219156;219157 219155 9 SYYALAESVK Unmodified 1129.5655 0.56554017 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 4 3 2 1 1 2 1 1 1 1 1 3 2 1 1 1 1 1 1 1 1 27.606 26.428 2;3 0.00019319 12465 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 96.331 90.672 21134000000 4102700000 3356700000 3401100000 19322000 20460000 21876000 0 1922100000 2056900000 3342400 3489600 3791300 977810000 890060000 842430000 2766700 0 0 1197200000 1164000000 1125000000 7127300 7551200 8418100 19331 397 18724 359311;359312;359313;359314;359315;359316;359317;359318;359319;359320;359321;359322;359323;359324;359325;359326;359327;359328;359329;359330;359331;359332;359333;359334;359335;359336;359337;359338;359339;359340;359341;359342;359343;359344;359345 219158;219159;219160;219161;219162;219163;219164;219165;219166;219167;219168;219169;219170;219171;219172;219173;219174;219175;219176;219177;219178;219179;219180;219181;219182;219183;219184 219158 27 SYYINQGTPAQLGGMLVDMAAR Unmodified 2355.1351 0.13513663 1821 P76142 lsrB Autoinducer 2-binding protein LsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 53.981 52.575 2;3 9.5345E-35 26021 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 285.81 264.04 248630000 85265000 82496000 80872000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19332 1821 18725 359346;359347;359348;359349;359350;359351 219185;219186;219187;219188;219189;219190 219186 6 TAAALHILVK Unmodified 1035.6441 0.64406526 534 P0A9L5 ppiC Peptidyl-prolyl cis-trans isomerase C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.451 21.947 2 6.2058E-05 9694 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.98 133.45 539000000 39890000 37051000 36350000 0 0 0 63403000 43747000 50858000 0 0 0 35776000 31379000 31479000 0 0 0 64564000 52571000 51937000 0 0 0 19333 534 18726 359352;359353;359354;359355;359356;359357;359358;359359;359360;359361;359362;359363 219191;219192;219193;219194;219195;219196;219197;219198;219199;219200;219201;219202;219203;219204;219205;219206;219207;219208 219191 15 TAADIEK Unmodified 746.38103 0.38103386 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 11.368 11.727 2 0.021939 2760 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.189 51.003 506880000 166620000 160390000 165380000 0 0 0 0 0 0 1474800 0 0 0 0 0 7436000 5569400 0 0 0 0 0 0 0 19334 1888 18727 359364;359365;359366;359367;359368;359369 219209;219210;219211 219210 3 TAAEGVGEAELASDAAYLK Unmodified 1864.9054 0.9054375 526 P0A9J0 rng Ribonuclease G yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 38.56 37.12 2 3.1706E-14 18004 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.16 143.75 23106000 8687900 7877400 6540700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19335 526 18728 359370;359371;359372 219212 219212 1 TAAEGVGEAELASDAAYLKR Unmodified 2021.0065 0.006548526 526 P0A9J0 rng Ribonuclease G yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 33.404 31.619 3 0.15291 12171 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 27.224 24.229 3785500 0 0 0 1227300 1346200 0 0 0 0 0 0 1212000 0 0 0 0 0 0 0 0 0 0 0 0 19336 526 18729 359373;359374;359375 219213 219213 0 TAAEIINLMK Unmodified 1102.6056 0.60563084 687 P0ABZ1 fliG Flagellar motor switch protein FliG yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 38.812 37.159 2 0.029298 13095 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 57.59 52.281 10055000 4594900 0 0 1776200 1747500 1936100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19337 687 18730 359376;359377;359378;359379 219214 219214 1 TAAELTR Unmodified 760.40792 0.40791731 1600 P52061 rdgB dITP/XTP pyrophosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.404 12.288 2 0.021939 3240 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 75.189 36.371 440920000 24621000 16831000 17056000 2608200 3782400 2462300 47621000 36778000 36774000 0 0 0 40156000 31128000 31862000 0 0 0 52223000 47412000 49604000 0 0 0 19338 1600 18731 359380;359381;359382;359383;359384;359385;359386;359387;359388;359389;359390;359391;359392;359393;359394 219215 219215 1 TAAENDFVTLK Unmodified 1207.6085 0.60846762 17 CON__P35908 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 27.899 26.291 2 7.0522E-05 9487 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 125.48 108.71 39855000 0 0 0 3791900 0 2297000 0 0 0 4473800 0 0 0 0 0 0 0 0 0 0 0 11294000 8228400 9770500 + 19339 17 18732 359395;359396;359397;359398;359399;359400;359401;359402 219216;219217;219218;219219;219220;219221 219218 6 TAAENDFVTLKK Unmodified 1335.7034 0.70343063 17 CON__P35908 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 18.95 19.044 2;3 3.4971E-05 5740 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 94.122 90.544 222470000 0 0 0 15908000 19514000 22015000 0 0 0 12629000 12209000 11925000 0 0 0 13116000 10616000 13807000 0 0 0 35278000 26189000 29263000 + 19340 17 18733 359403;359404;359405;359406;359407;359408;359409;359410;359411;359412;359413;359414;359415;359416;359417;359418;359419;359420;359421;359422;359423;359424;359425 219222;219223;219224;219225;219226;219227;219228;219229;219230;219231 219225 10 TAAENEFVTLKK Unmodified 1349.7191 0.7190807 8 CON__P48668;CON__P02538;CON__P04259 no no 0 0 1 By matching By matching By MS/MS By matching 1 1 1 1 19.346 19.373 3 0.0093678 6043 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 56.122 54.543 11427000 0 1570300 0 0 0 0 0 0 0 5136600 0 4249800 0 0 0 470610 0 0 0 0 0 0 0 0 + 19341 8 18734 359426;359427;359428;359429 219232 219232 1 TAAILLDTK Unmodified 944.55425 0.5542472 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 2 2 2 2 2 2 1 2 2 25.857 24.756 2 0.00014665 11527 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 131.22 97.707 5400300000 509760000 488140000 451060000 1583500 0 0 776340000 749500000 659510000 0 0 0 568250000 38551000 35427000 0 0 0 580730000 11472000 529960000 0 0 0 19342 771 18735 359430;359431;359432;359433;359434;359435;359436;359437;359438;359439;359440;359441;359442;359443;359444;359445;359446;359447;359448;359449;359450;359451 219233;219234;219235;219236;219237;219238;219239;219240;219241 219233 9 TAALIGVDYLAVSFPR Unmodified 1691.9247 0.9246568 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 1 2 1 2 2 2 1 2 2 2 1 1 54.306 52.899 2;3 6.4328E-14 25919 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 168.5 161.88 2739900000 123430000 101380000 120710000 0 2126400 2779900 318800000 286620000 249610000 6351600 7704800 4973900 295210000 263840000 322980000 1984800 0 0 220680000 216230000 185570000 4915400 3955800 0 19343 1184 18736 359452;359453;359454;359455;359456;359457;359458;359459;359460;359461;359462;359463;359464;359465;359466;359467;359468;359469;359470;359471;359472;359473;359474;359475;359476;359477;359478;359479;359480;359481;359482;359483;359484 219242;219243;219244;219245;219246;219247;219248;219249;219250;219251;219252;219253;219254;219255;219256;219257;219258;219259;219260;219261;219262;219263;219264 219250 23 TAALVMNIDDMSK Unmodified 1407.6738 0.67378676 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.261 36.402 2 1.5986E-12 17893 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 193.83 191.68 647660000 52602000 47685000 42488000 3650600 3670500 3888400 41756000 46669000 46121000 11037000 10263000 11851000 49880000 37926000 43768000 0 0 0 58065000 48610000 56076000 10831000 11413000 9405800 19344 1185 18737 359485;359486;359487;359488;359489;359490;359491;359492;359493;359494;359495;359496;359497;359498;359499;359500;359501;359502;359503;359504;359505 219265;219266;219267;219268;219269;219270;219271;219272;219273;219274;219275;219276;219277 219266 13 TAALVMNIDDMSKR Unmodified 1563.7749 0.77489779 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 1 2 2 2 31.412 29.784 2;3 1.4897E-06 11497 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 129.89 123.66 61554000 0 0 0 1930100 2033000 2473200 0 0 0 6990300 6603700 5233400 0 0 0 3861000 3424600 3495200 0 0 0 7988700 8143500 9377200 19345 1185 18738 359506;359507;359508;359509;359510;359511;359512;359513;359514;359515;359516;359517;359518;359519;359520;359521;359522 219278;219279;219280;219281;219282 219278 5 TAANGIER Unmodified 830.42463 0.42463001 1466 P37339 lhgO L-2-hydroxyglutarate oxidase LhgO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 2 3 4 1 1 1 3 2 2 1 1 1 1 1 7.3993 8.1711 2 0.0019937 1737 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.21 41.494 16586000000 1164000000 1028200000 1160200000 27642000 23651000 17257000 2982500000 3400000000 3087800000 28098000 24307000 28040000 508040000 489280000 756150000 0 0 0 639420000 592750000 598140000 16295000 0 14283000 19346 1466 18739 359523;359524;359525;359526;359527;359528;359529;359530;359531;359532;359533;359534;359535;359536;359537;359538;359539;359540;359541;359542;359543;359544;359545;359546;359547;359548;359549;359550;359551;359552;359553 219283;219284;219285;219286;219287;219288;219289;219290;219291;219292;219293;219294;219295;219296;219297;219298;219299;219300;219301;219302;219303;219304 219295 21 TAANSLVLK Unmodified 915.53893 0.53893149 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 2 2 17.453 17.711 2 0.024695 6068 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 61.582 19.93 75072000 2247400 2003400 0 0 911120 1354000 4605900 2688500 2778300 3959400 3836700 3582200 3787600 2405900 0 416360 6667600 6984100 7141300 4307300 5277300 1940100 4228700 3948600 19347 819 18740 359554;359555;359556;359557;359558;359559;359560;359561;359562;359563;359564;359565;359566;359567;359568;359569;359570;359571;359572;359573;359574;359575;359576;359577;359578;359579;359580;359581 219305;219306;219307;219308;219309 219307 3 TAAPSPSSSDKP Unmodified 1143.5408 0.54078198 1731 P69425 tatB Sec-independent protein translocase protein TatB yes yes 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 11.357 12.15 2 0.031006 3265 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 53.597 44.684 41798000 0 0 0 0 0 0 10803000 11326000 7698000 0 0 0 0 0 0 0 0 0 6161700 0 5808800 0 0 0 19348 1731 18741 359582;359583;359584;359585;359586 219310 219310 1 TAAQDGDMIFFGADNK Unmodified 1699.7512 0.75118546 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 41.076 39.411 2;3 1.1761E-13 19066 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 217.46 215.14 1041300000 62622000 57275000 57886000 0 0 0 104800000 93159000 96681000 0 0 0 101160000 84211000 91644000 0 0 0 97257000 99261000 95381000 0 0 0 19349 1189 18742 359587;359588;359589;359590;359591;359592;359593;359594;359595;359596;359597;359598;359599;359600;359601;359602;359603;359604;359605;359606;359607;359608;359609;359610 219311;219312;219313;219314;219315;219316;219317;219318;219319;219320;219321;219322;219323;219324;219325 219316 15 TAAQDGDMIFFGADNKK Unmodified 1827.8461 0.84614848 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 32.048 30.717 2;3 2.6648E-39 14379 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 248.64 247.68 2778000000 179510000 158610000 174940000 0 0 0 257440000 26146000 234170000 0 0 0 287100000 242690000 257880000 0 0 0 327290000 324690000 307520000 0 0 0 19350 1189 18743 359611;359612;359613;359614;359615;359616;359617;359618;359619;359620;359621;359622;359623;359624;359625;359626;359627;359628;359629;359630;359631;359632;359633 219326;219327;219328;219329;219330;219331;219332;219333;219334;219335;219336;219337;219338;219339;219340;219341;219342;219343;219344;219345;219346;219347;219348 219336 23 TAATSDEMVSLMTK Unmodified 1483.6898 0.68983076 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 34.488 32.875 2 1.6084E-11 15608 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.97 137.68 189040000 151400000 0 0 0 0 0 14926000 13057000 6054900 0 0 0 3600800 0 0 0 0 0 0 0 0 0 0 0 19351 1816 18744 359634;359635;359636;359637;359638;359639;359640 219349;219350;219351 219350 3 TAAVADYYAPIR Unmodified 1309.6667 0.6666512 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 31.112 29.442 2 1.1537E-06 10948 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 111.61 103.38 28499000 4482400 4919300 0 4275800 3991400 3371700 0 0 0 3057900 0 0 0 0 0 0 0 0 0 0 0 1912800 2488000 0 19352 1393 18745 359641;359642;359643;359644;359645;359646;359647;359648;359649 219352;219353;219354 219353 2 TAAVMLLMPR Unmodified 1101.6039 0.60385671 1752 P69831 gatC Galactitol permease IIC component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.784 40.912 2 6.6715E-05 20428 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 133.55 121.78 112310000 7167900 7302600 8045800 0 0 0 12343000 10454000 10207000 7705800 6369400 5592300 7402400 7079900 7873400 0 0 0 5715200 4316000 4741000 0 0 0 19353 1752 18746 359650;359651;359652;359653;359654;359655;359656;359657;359658;359659;359660;359661;359662;359663;359664 219355;219356;219357 219356 3 TACEVAEISYK Unmodified 1269.5911 0.59110299 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 22.252 21.857 2 0.00012111 8835 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 115.82 111.41 367230000 52898000 58499000 64800000 0 0 0 25114000 25614000 25011000 0 0 0 17766000 14672000 12683000 0 0 0 23148000 26173000 20438000 0 413610 0 19354 734 18747 359665;359666;359667;359668;359669;359670;359671;359672;359673;359674;359675;359676;359677 219358;219359;219360;219361;219362;219363;219364;219365;219366 219365 9 TACLPNFHLLR Unmodified 1340.7023 0.7023252 1555 P42599 ygjR Uncharacterized oxidoreductase YgjR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.021 33.565 3 0.00012003 16551 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 96.342 87.147 397500000 68461000 70159000 52523000 0 0 0 33092000 23839000 23995000 0 0 0 20828000 17515000 19294000 0 0 0 22296000 23712000 21782000 0 0 0 19355 1555 18748 359678;359679;359680;359681;359682;359683;359684;359685;359686;359687;359688;359689 219367;219368;219369;219370;219371;219372;219373;219374;219375;219376;219377;219378 219367 12 TADEQQAPR Unmodified 1014.473 0.47303677 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 8.1074 8.9831 2 7.9886E-08 1314 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 187.55 183.19 114000000 28355000 8683700 3324500 2215100 0 1334900 7283800 6181600 6503500 0 0 0 3130600 3682400 0 0 0 0 10940000 13320000 19046000 0 0 0 19356 1183 18749 359690;359691;359692;359693;359694;359695;359696;359697;359698;359699;359700;359701;359702 219379;219380;219381;219382;219383;219384;219385;219386;219387;219388;219389 219381 11 TADGKDYLVVATTRPETLLGDTGVAVNPEDPR Unmodified 3369.7052 0.70522813 158 P07118 valS Valine--tRNA ligase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 45.003 43.411 3;4 4.4237E-19 21183 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.55 153.64 896450000 82924000 65715000 68315000 0 2073500 2179400 87544000 69328000 71325000 2072800 2672700 2974700 57075000 61215000 52845000 0 0 0 82602000 97422000 88166000 0 0 0 19357 158 18750 359703;359704;359705;359706;359707;359708;359709;359710;359711;359712;359713;359714;359715;359716;359717;359718;359719;359720;359721;359722;359723;359724;359725;359726;359727;359728;359729;359730;359731 219390;219391;219392;219393;219394;219395;219396;219397;219398;219399;219400;219401;219402;219403 219396 14 TADKDSATSQFFINVADNAFLDHGQR Unmodified 2867.3474 0.34744891 952 P0AFL3 ppiA Peptidyl-prolyl cis-trans isomerase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 47.899 46.481 3;4 1.2659E-60 22629 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 249.12 248.4 1727400000 39306000 136580000 153390000 0 0 0 138000000 134350000 139660000 0 0 0 115330000 119990000 95613000 0 0 0 214100000 234330000 206760000 0 0 0 19358 952 18751 359732;359733;359734;359735;359736;359737;359738;359739;359740;359741;359742;359743;359744;359745;359746;359747;359748;359749;359750;359751;359752;359753;359754 219404;219405;219406;219407;219408;219409;219410;219411;219412;219413;219414;219415;219416;219417;219418;219419;219420;219421 219413 18 TADMIPPLLFPR Unmodified 1369.7428 0.74279303 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 53.544 52.106 2;3 1.3706E-08 25582 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.25 125.29 552430000 61268000 59499000 57694000 0 0 0 37477000 39906000 45755000 0 0 748070 36425000 34569000 42535000 0 0 0 51444000 45942000 39171000 0 0 0 19359 1085 18752 359755;359756;359757;359758;359759;359760;359761;359762;359763;359764;359765;359766;359767;359768;359769;359770;359771;359772;359773;359774;359775;359776;359777;359778;359779 219422;219423;219424;219425;219426;219427;219428;219429;219430;219431;219432;219433;219434;219435 219429 13 TADQGTNIQTPAQMAK Unmodified 1673.8043 0.80428367 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 1 1 20.252 20.417 2;3 2.7656E-14 8155 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 220.66 216.57 831430000 7762100 10612000 7581700 2618500 2249900 2583700 109000000 100290000 108260000 36238000 38334000 33211000 80654000 71513000 63696000 4561600 5469000 3857000 41568000 36967000 48026000 4717200 5487600 6175000 19360 700 18753 359780;359781;359782;359783;359784;359785;359786;359787;359788;359789;359790;359791;359792;359793;359794;359795;359796;359797;359798;359799;359800;359801;359802;359803;359804;359805;359806;359807;359808;359809;359810;359811;359812;359813;359814;359815;359816 219436;219437;219438;219439;219440;219441;219442;219443;219444;219445;219446;219447;219448;219449;219450;219451;219452;219453;219454;219455;219456;219457;219458;219459;219460;219461;219462;219463 219446 28 TADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTAR Unmodified 3824.7799 0.77992599 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.329 49.28 3 1.3294E-37 18134 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 190.44 186.04 115750000 11299000 13081000 0 0 0 0 8273800 10112000 10802000 0 0 0 6214600 9489600 7610800 13641000 12704000 9619500 0 0 0 2907000 0 0 19361 222 18754 359817;359818;359819;359820;359821;359822;359823;359824;359825;359826;359827;359828 219464;219465;219466 219465 3 TAEDAQK Unmodified 761.35555 0.35554739 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 4.7146 5.5529 2 0.005062 781 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.21 87.436 338120000 8956100 8936000 10082000 0 0 0 0 1202200 0 0 0 0 54175000 47377000 60474000 0 0 0 50570000 46662000 49686000 0 0 0 19362 257 18755 359829;359830;359831;359832;359833;359834;359835;359836;359837;359838 219467;219468;219469;219470;219471;219472;219473;219474;219475 219473 9 TAEDENVVGLQR Unmodified 1329.6525 0.6524577 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.873 21.015 2 1.0364E-24 8455 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 295.96 274.27 2119100000 137120000 132890000 132210000 6132100 5112800 4524000 138750000 149080000 143900000 33952000 32519000 28650000 175120000 154430000 170780000 8645400 5944800 7407900 202560000 218830000 187940000 15144000 15759000 11720000 19363 882 18756 359839;359840;359841;359842;359843;359844;359845;359846;359847;359848;359849;359850;359851;359852;359853;359854;359855;359856;359857;359858;359859;359860;359861;359862 219476;219477;219478;219479;219480;219481;219482;219483;219484;219485;219486;219487;219488;219489;219490;219491;219492;219493 219487 18 TAEDYLGEPVTEAVITVPAYFNDAQR Unmodified 2868.3818 0.38176873 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 54.613 53.206 2;3 6.9976E-72 26423 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 348.33 344.43 3176700000 268280000 258620000 215490000 32167000 21388000 25907000 236430000 214000000 215310000 132980000 100400000 105310000 195830000 169130000 176090000 6523500 0 0 259140000 219980000 221150000 38616000 36707000 27224000 19364 293 18757 359863;359864;359865;359866;359867;359868;359869;359870;359871;359872;359873;359874;359875;359876;359877;359878;359879;359880;359881;359882;359883;359884;359885;359886;359887;359888;359889;359890;359891;359892;359893;359894;359895;359896;359897;359898;359899;359900;359901;359902 219494;219495;219496;219497;219498;219499;219500;219501;219502;219503;219504;219505;219506;219507;219508;219509;219510;219511;219512;219513;219514;219515;219516;219517;219518;219519;219520;219521;219522;219523;219524 219500 31 TAEEWNIPDAEGYANSR Unmodified 1921.8442 0.84423422 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.9 35.243 2 1.0179E-49 17024 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 275.63 274.05 193790000 6620700 4857200 3287100 0 0 0 20955000 23991000 21700000 0 0 0 22118000 17528000 16522000 0 0 0 19606000 18575000 18033000 0 0 0 19365 1323 18758 359903;359904;359905;359906;359907;359908;359909;359910;359911;359912;359913;359914 219525;219526;219527;219528;219529;219530;219531;219532;219533 219529 9 TAEGGAEHVQPITGDNIVNVLDDFR Unmodified 2666.2936 0.29362242 1022 P0AGJ5 yfiF Uncharacterized tRNA/rRNA methyltransferase YfiF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 50.453 49.177 3 4.3358E-10 24063 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.23 112.22 149340000 27987000 28897000 38844000 0 0 0 5065400 4806200 6498600 0 0 0 5466700 4925200 4465500 0 1304700 0 7599300 6420700 7060000 0 0 0 19366 1022 18759 359915;359916;359917;359918;359919;359920;359921;359922;359923;359924;359925;359926;359927 219534;219535;219536 219535 3 TAEICEHLK Unmodified 1099.5332 0.53319418 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 2 2 2 12.647 13.5 2;3 0.0005676 3735 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 106.91 100.27 8895000000 110220000 235730000 106910000 0 0 0 1036800000 1141400000 1054000000 0 0 0 963590000 824540000 890700000 0 0 0 862220000 889140000 779700000 0 0 0 19367 239 18760 359928;359929;359930;359931;359932;359933;359934;359935;359936;359937;359938;359939;359940;359941;359942;359943;359944;359945;359946;359947;359948;359949 219537;219538;219539;219540;219541;219542;219543;219544;219545;219546;219547;219548;219549;219550;219551;219552;219553;219554;219555;219556;219557 219556 21 TAEICEHLKR Unmodified 1255.6343 0.63430521 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 2 11.717 12.509 2;3 0.013179 3412 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.985 61.008 2696400000 54304000 35848000 38533000 3749000 2649600 3995100 344680000 322630000 372980000 0 0 0 282850000 241580000 58649000 0 0 0 315560000 299720000 292280000 9429300 6875800 10051000 19368 239 18761 359950;359951;359952;359953;359954;359955;359956;359957;359958;359959;359960;359961;359962;359963;359964;359965;359966;359967;359968;359969;359970;359971;359972;359973;359974;359975;359976;359977;359978;359979;359980;359981;359982 219558;219559;219560;219561;219562;219563;219564;219565;219566 219562 2 TAEIGYWLDESHQGQGIISQALQALIHHYAQSGELR Unmodified 4018.9926 0.9925768 1092 P13857 rimL Ribosomal-protein-serine acetyltransferase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 54.807 53.405 5 0.037025 26230 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 41.749 41.401 28587000 0 0 0 0 0 0 0 0 0 0 0 0 0 6819800 0 0 0 0 11113000 10653000 0 0 0 0 19369 1092 18762 359983;359984;359985 219567 219567 0 TAEMLLGEQENVGWIDFVPGENAETLIEK Unmodified 3231.5646 0.56456048 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.092 53.872 3 2.0821E-11 21632 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 126.42 124.2 385870000 5398900 0 0 2883000 3015200 4994200 25382000 16954000 23077000 29697000 34425000 29560000 17131000 17853000 12976000 41034000 46816000 40395000 0 13758000 12057000 0 8462100 0 19370 1745 18763 359986;359987;359988;359989;359990;359991;359992;359993;359994;359995;359996;359997;359998;359999;360000;360001;360002;360003;360004 219568;219569;219570;219571;219572 219572 5 TAFETAPQYEGK Unmodified 1340.6248 0.62484596 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 20.483 20.891 2 2.8237E-06 7942 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 139.38 134.48 238640000 49437000 48766000 39843000 0 0 0 33131000 21929000 21850000 0 0 0 9179400 6888900 7621400 0 0 0 0 0 0 0 0 0 19371 119 18764 360005;360006;360007;360008;360009;360010;360011;360012;360013 219573;219574;219575;219576;219577;219578 219576 4 TAFFTTGAEAVENAVK Unmodified 1654.8203 0.82025131 1592 P50457 puuE 4-aminobutyrate aminotransferase PuuE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 43.115 41.522 2 3.6537E-08 20384 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 152.96 120.54 113600000 30352000 27351000 28977000 526150 0 0 6340200 5791300 4156100 0 0 0 0 0 0 0 0 0 0 4218000 5885600 0 0 0 19372 1592 18765 360014;360015;360016;360017;360018;360019;360020;360021;360022 219579;219580;219581 219579 3 TAFILECK Unmodified 980.5001 0.50010314 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 28.11 26.937 2 0.0085251 12214 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 81.548 67.562 45019000 0 33576000 0 0 0 0 2355400 0 0 0 0 0 1991700 2862400 0 0 0 0 4233500 0 0 0 0 0 19373 49 18766 360023;360024;360025;360026;360027 219582 219582 1 TAGAYWR Unmodified 823.39769 0.39768698 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 1 1 1 1 2 2 2 1 1 2 2 2 1 1 16.953 17.496 1;2 6.1481E-05 6178 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 133.99 82.952 1072400000 96110000 0 103350000 0 0 0 129940000 138500000 128450000 2582600 1844700 1586600 101100000 104960000 94738000 757190 700630 0 132220000 15723000 17839000 1164700 866770 0 19374 445 18767 360028;360029;360030;360031;360032;360033;360034;360035;360036;360037;360038;360039;360040;360041;360042;360043;360044;360045;360046;360047;360048;360049;360050;360051;360052;360053;360054;360055 219583;219584;219585;219586;219587;219588;219589;219590;219591;219592;219593 219590 9 TAGGKDLRPALK Unmodified 1225.7143 0.71427009 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 11.983 12.336 2;3 1.4189E-22 2671 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 230.95 189.52 10811000000 0 0 0 5949800 7206900 5846200 0 0 0 717930000 732810000 732570000 0 0 0 2031500000 1888200000 1721300000 0 0 0 1065600000 884840000 1017600000 19375 458 18768 360056;360057;360058;360059;360060;360061;360062;360063;360064;360065;360066;360067;360068;360069;360070;360071;360072;360073;360074;360075;360076;360077;360078 219594;219595;219596;219597;219598;219599;219600;219601;219602;219603;219604;219605;219606;219607;219608;219609;219610;219611;219612;219613;219614 219595 21 TAGSSGANPFACIAAGIASLWGPAHGGANEAALK Unmodified 3194.5567 0.55673018 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 2 1 55.205 53.718 3;4 1.223E-33 26742 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 185.47 183.25 3407300000 907650000 849500000 772850000 0 0 0 27362000 21411000 3077000 12608000 10574000 10385000 0 0 0 0 0 0 255490000 240780000 291820000 0 3769500 0 19376 657 18769 360079;360080;360081;360082;360083;360084;360085;360086;360087;360088;360089;360090;360091;360092;360093;360094;360095 219615;219616;219617;219618;219619;219620 219615 6 TAGVIGTGK Unmodified 802.45487 0.45486751 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.121 12.875 2 0.00084741 3554 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 99.7 82.143 1421800000 135420000 98444000 113390000 0 0 0 170540000 185400000 155460000 0 955070 1474400 103640000 80720000 83118000 0 0 0 100620000 91725000 100860000 0 0 0 19377 1608 18770 360096;360097;360098;360099;360100;360101;360102;360103;360104;360105;360106;360107;360108;360109 219621;219622;219623;219624;219625;219626;219627;219628;219629;219630 219623 5 TAHIALMDIDPTRLEESHIVVR Unmodified 2515.3217 0.32169185 129 P06720 melA Alpha-galactosidase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 2 2 2 2 2 1 1 1 2 1 1 40.724 38.98 4;5 0.0035004 15897 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 52.451 48.261 95271000 0 6569400 4784600 5468400 5610400 6904700 0 0 0 11613000 9876800 12883000 0 0 0 3462000 2539500 3128200 0 0 0 9110100 6589800 6730500 19378 129 18771 360110;360111;360112;360113;360114;360115;360116;360117;360118;360119;360120;360121;360122;360123;360124;360125;360126;360127;360128;360129;360130 219631;219632;219633;219634 219631 4 TAHQLVLSK Unmodified 995.57638 0.57637963 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.381 13.147 2 4.1068E-06 3736 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 174.86 143.56 5352600000 303970000 347740000 333240000 0 1410800 0 557460000 561470000 546050000 3000100 2863600 0 472670000 481610000 368180000 0 0 0 467190000 455520000 450230000 0 0 0 19379 771 18772 360131;360132;360133;360134;360135;360136;360137;360138;360139;360140;360141;360142;360143;360144;360145 219635;219636;219637;219638;219639;219640;219641;219642;219643;219644;219645;219646 219640 12 TAIAEGLAWR Unmodified 1086.5822 0.58219329 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 33.953 32.44 2 0.087755 11272 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 45.161 38.848 72746000 0 0 0 1966800 2868300 2260500 12877000 0 15168000 0 0 0 11017000 10061000 10841000 0 0 0 0 0 5685800 0 0 0 19380 658 18773 360146;360147;360148;360149;360150;360151;360152;360153;360154 219647;219648 219648 0 TAIAHHGR Unmodified 861.45693 0.45693319 1670 P64455 ydcY Uncharacterized protein YdcY yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5.9822 6.6641 2 0.00094389 793 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 116.54 103.2 766190000 0 0 0 1668900 1190200 1644000 108300000 116720000 94851000 2130600 1676900 2026000 74992000 72176000 64431000 1533000 0 0 76928000 71123000 73287000 671160 0 829410 19381 1670 18774 360155;360156;360157;360158;360159;360160;360161;360162;360163;360164;360165;360166;360167;360168;360169;360170;360171;360172 219649;219650;219651;219652;219653;219654;219655;219656;219657;219658;219659;219660 219653 7 TAIAMMFR Unmodified 939.46703 0.46702887 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By MS/MS 1 35.548 34.158 2 0.0025422 15675 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 100.74 87.534 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19382 193 18775 360173 219661 219661 1 TAICGTDVHIYNWDEWSQK Unmodified 2322.0375 0.037531078 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.678 39.979 3 7.4949E-10 19614 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 115.98 112.74 1117800000 153580000 124410000 111010000 0 0 0 62058000 72410000 68793000 0 0 0 74301000 67472000 81843000 0 0 0 106880000 93132000 101950000 0 0 0 19383 172 18776 360174;360175;360176;360177;360178;360179;360180;360181;360182;360183;360184;360185 219662;219663;219664;219665;219666;219667;219668;219669;219670;219671;219672;219673 219668 12 TAIESALTALETALK Unmodified 1530.8505 0.8504888 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 5 5 4 2 6 6 6 1 1 1 5 4 4 2 2 2 5 5 5 54.728 53.383 2;3 1.4661E-35 26836 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 257.54 234.4 5123600000 434760000 408310000 391550000 0 1550900 0 634420000 604070000 613630000 4004300 2933100 3606600 316770000 284870000 284040000 3897000 4332800 6833800 401960000 370640000 351390000 0 0 0 19384 293 18777 360186;360187;360188;360189;360190;360191;360192;360193;360194;360195;360196;360197;360198;360199;360200;360201;360202;360203;360204;360205;360206;360207;360208;360209;360210;360211;360212;360213;360214;360215;360216;360217;360218;360219;360220;360221;360222;360223;360224;360225;360226;360227;360228;360229;360230;360231;360232;360233;360234;360235;360236;360237;360238;360239;360240;360241;360242;360243;360244;360245;360246;360247;360248;360249;360250;360251;360252;360253;360254;360255;360256 219674;219675;219676;219677;219678;219679;219680;219681;219682;219683;219684;219685;219686;219687;219688;219689;219690;219691;219692;219693;219694;219695;219696;219697 219690 24 TAIESALTALETALKGEDK Unmodified 1960.0365 0.036451671 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 54.715 53.274 2;3 7.8911E-45 26430 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 306.67 289.9 9019000000 819340000 725280000 761180000 4401900 3751300 3932900 820380000 697930000 793820000 38845000 27736000 33345000 655520000 582470000 503520000 0 0 0 912320000 837260000 771180000 9768400 8799100 8261900 19385 293 18778 360257;360258;360259;360260;360261;360262;360263;360264;360265;360266;360267;360268;360269;360270;360271;360272;360273;360274;360275;360276;360277;360278;360279;360280;360281;360282;360283;360284;360285;360286;360287;360288;360289;360290 219698;219699;219700;219701;219702;219703;219704;219705;219706;219707;219708;219709;219710;219711;219712;219713;219714;219715;219716;219717;219718;219719;219720;219721;219722;219723 219704 26 TAIESALTALETALKGEDKAAIEAK Unmodified 2543.3694 0.36941313 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 53.716 52.317 4 4.5395E-16 21115 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 132.1 129.37 48608000 0 0 0 2881100 4034600 2966700 0 0 0 14002000 21098000 0 0 0 0 0 0 0 0 0 0 0 3626000 0 19386 293 18779 360291;360292;360293;360294;360295;360296 219724 219724 1 TAIHALAR Unmodified 851.49774 0.49773538 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.082 12.729 2 0.00057661 3590 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 132.09 111.54 420570000 101280000 90945000 90517000 0 0 0 39712000 37104000 34558000 0 757680 537090 0 0 0 0 0 0 0 25163000 0 0 0 0 19387 218 18780 360297;360298;360299;360300;360301;360302;360303;360304;360305 219725;219726;219727 219725 3 TAIIWEGDDASQSK Unmodified 1519.7155 0.71545188 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 29.521 28.276 2 1.8766E-11 13286 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.42 172.54 1410500000 475620000 501970000 428610000 1831000 1085400 1352200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19388 1305 18781 360306;360307;360308;360309;360310;360311 219728;219729;219730 219728 3 TAIMENAHLVLSAASFAESDGTVINNEGR Unmodified 3016.456 0.45601308 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.82 48.393 3 1.5351E-41 19660 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 214.61 212.61 424470000 7971600 9628100 8373300 19185000 18775000 19157000 24737000 18664000 27251000 35316000 31007000 14671000 23724000 23761000 19794000 0 0 0 33942000 30552000 42713000 15245000 0 0 19389 1427 18782 360312;360313;360314;360315;360316;360317;360318;360319;360320;360321;360322;360323;360324;360325;360326;360327;360328;360329;360330 219731;219732;219733;219734;219735;219736;219737;219738;219739;219740 219731 9 TAIQNTGK Unmodified 831.44503 0.4450311 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 3 3 2 1 1 1 1 1 1 1 1 2 2 4 1 1 2 8.6666 9.3156 2 0.0010066 2232 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 113.89 98.45 1448700000 52681000 31093000 24036000 3263400 2830500 2723900 216440000 187330000 179550000 14805000 6600000 0 0 0 23558000 15137000 8119000 6123800 205200000 194170000 208150000 18972000 30847000 17118000 19390 1819 18783 360331;360332;360333;360334;360335;360336;360337;360338;360339;360340;360341;360342;360343;360344;360345;360346;360347;360348;360349;360350;360351;360352;360353;360354;360355;360356;360357;360358;360359;360360;360361;360362;360363;360364 219741;219742;219743;219744;219745;219746;219747;219748;219749;219750;219751;219752;219753;219754;219755;219756 219748 15 TAISDLEVENR Unmodified 1245.6201 0.62009493 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.022 24.898 2 1.9443E-06 10986 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.84 137.62 2671400000 198130000 219220000 189990000 0 0 1468900 218920000 219420000 231790000 0 2018300 2241700 194550000 184770000 177920000 1274500 0 0 278980000 279050000 270340000 0 1321400 0 19391 158 18784 360365;360366;360367;360368;360369;360370;360371;360372;360373;360374;360375;360376;360377;360378;360379;360380;360381 219757;219758;219759;219760;219761;219762;219763;219764;219765;219766;219767;219768 219765 9 TAISQFEGYIK Unmodified 1255.6449 0.64485312 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.936 36.32 2 6.7443E-05 17854 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 126.07 117.54 1836800000 134820000 115070000 115930000 3475600 3278600 4113600 138060000 141630000 127130000 24638000 23131000 22944000 134780000 104140000 110240000 65706000 58104000 67010000 146660000 125600000 128260000 14717000 13652000 13728000 19392 536 18785 360382;360383;360384;360385;360386;360387;360388;360389;360390;360391;360392;360393;360394;360395;360396;360397;360398;360399;360400;360401;360402;360403;360404;360405 219769;219770;219771;219772;219773;219774;219775;219776;219777;219778;219779;219780;219781;219782;219783;219784;219785;219786;219787;219788;219789;219790;219791 219776 19 TAIVEGLAQR Unmodified 1056.5928 0.59275797 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.472 22.63 2 6.2068E-09 10037 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 190.51 175.74 1956900000 251670000 210800000 193390000 3865000 3954900 3857300 250660000 230400000 202790000 8955200 9562000 6792300 98131000 80136000 90305000 0 0 0 97654000 106920000 102190000 1407400 1827200 1607800 19393 1662 18786 360406;360407;360408;360409;360410;360411;360412;360413;360414;360415;360416;360417;360418;360419;360420;360421;360422;360423;360424;360425;360426 219792;219793;219794;219795;219796;219797;219798;219799;219800;219801;219802;219803;219804;219805;219806;219807 219794 16 TAIVMVLK Unmodified 873.53576 0.53576037 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 31.914 30.557 2 0.016212 14293 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 68.915 59.165 112910000 9615700 9893600 0 0 0 0 14194000 12143000 11872000 0 0 0 8379600 7602100 7352600 0 0 0 11706000 11440000 8710500 0 0 0 19394 1867 18787 360427;360428;360429;360430;360431;360432;360433;360434;360435;360436;360437 219808;219809;219810;219811;219812;219813;219814 219810 7 TALAIDAIINQR Unmodified 1297.7354 0.73539946 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 2 2 2 2 2 4 2 2 2 2 3 2 3 2 3 2 2 42.374 40.779 2;3 3.8974E-17 15178 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 264.3 246.86 5741900000 168160000 167970000 155440000 49378000 42702000 45615000 467680000 463460000 413420000 166270000 165560000 152690000 429360000 403870000 417390000 39065000 29747000 34666000 472370000 474890000 494480000 164790000 166180000 156780000 19395 645 18788 360438;360439;360440;360441;360442;360443;360444;360445;360446;360447;360448;360449;360450;360451;360452;360453;360454;360455;360456;360457;360458;360459;360460;360461;360462;360463;360464;360465;360466;360467;360468;360469;360470;360471;360472;360473;360474;360475;360476;360477;360478;360479;360480;360481;360482;360483;360484;360485;360486;360487;360488;360489;360490;360491 219815;219816;219817;219818;219819;219820;219821;219822;219823;219824;219825;219826;219827;219828;219829;219830;219831;219832;219833;219834;219835;219836;219837;219838;219839;219840;219841;219842;219843;219844;219845;219846;219847;219848;219849;219850;219851;219852;219853;219854;219855;219856;219857;219858;219859;219860;219861;219862;219863;219864;219865;219866;219867;219868;219869;219870;219871;219872;219873 219815 58 TALAIELR Unmodified 885.52837 0.5283668 1118 P16384 miaA tRNA dimethylallyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.389 29.032 2 0.0030318 13600 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 95.531 55.262 75049000 10580000 9289700 8264600 0 0 0 4954600 4602200 3835700 0 0 0 4851600 4007500 3497000 0 0 0 6848900 8260300 6056000 0 0 0 19396 1118 18789 360492;360493;360494;360495;360496;360497;360498;360499;360500;360501;360502;360503 219874;219875 219875 2 TALAQYR Unmodified 821.43955 0.43955179 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.989 14.587 2 0.00087141 3878 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 142.63 115.51 5031000000 158800000 144050000 150140000 34242000 29800000 34637000 442560000 415890000 403840000 88842000 89747000 97427000 433400000 380770000 360040000 31968000 21796000 22599000 438950000 472930000 456340000 96152000 116420000 109610000 19397 645 18790 360504;360505;360506;360507;360508;360509;360510;360511;360512;360513;360514;360515;360516;360517;360518;360519;360520;360521;360522;360523;360524;360525;360526;360527 219876;219877;219878;219879;219880;219881;219882;219883;219884;219885;219886;219887;219888;219889;219890;219891;219892 219881 17 TALASSVR Unmodified 803.45012 0.45011648 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 12.333 13.165 2 0.062308 3257 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 57.177 29.071 32236000 0 0 0 0 1396800 1637300 7713800 0 0 0 5166500 0 0 0 0 0 0 0 5853200 4925600 5542300 0 0 0 19398 1300 18791 360528;360529;360530;360531;360532;360533;360534 219893 219893 1 TALEGDGMR Unmodified 948.43348 0.43348014 1187 P21866 kdpE KDP operon transcriptional regulatory protein KdpE yes yes 0 0 0 By MS/MS By matching 1 1 13.954 14.777 2 0.034482 4739 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 61.962 14.114 34893000 0 19833000 15060000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19399 1187 18792 360535;360536 219894 219894 0 TALGNDYHALFSFDDALAGR Unmodified 2153.0178 0.017781914 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 50.28 48.865 2;3 2.6012E-81 23822 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 317.7 310.38 2498600000 199490000 175950000 165670000 0 1229400 1665300 193550000 188890000 187850000 1348400 0 0 232500000 220820000 227850000 0 0 0 254410000 236350000 210990000 0 0 0 19400 1456 18793 360537;360538;360539;360540;360541;360542;360543;360544;360545;360546;360547;360548;360549;360550;360551;360552;360553;360554;360555;360556;360557;360558;360559;360560;360561;360562;360563 219895;219896;219897;219898;219899;219900;219901;219902;219903;219904;219905;219906;219907;219908;219909;219910;219911;219912;219913;219914 219902 20 TALIDHLDTMAER Unmodified 1484.7293 0.72932781 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 31.5 29.896 2;3 6.4429E-07 14061 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.24 138.94 4591200000 1339600000 1066300000 1092300000 18640000 20560000 22545000 252970000 231920000 250820000 15113000 32587000 41581000 17474000 23003000 18891000 0 0 0 46839000 50136000 45209000 1846300 0 2888700 19401 677 18794 360564;360565;360566;360567;360568;360569;360570;360571;360572;360573;360574;360575;360576;360577;360578;360579;360580;360581;360582;360583;360584;360585;360586;360587;360588;360589;360590;360591;360592;360593;360594 219915;219916;219917;219918;219919;219920;219921;219922;219923;219924;219925;219926;219927;219928;219929;219930;219931;219932 219928 17 TALITGALQGIGEGIAR Unmodified 1639.9257 0.92571943 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.735 46.32 2;3 7.109E-19 21563 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 241.84 230.63 833500000 65375000 73309000 53538000 0 0 0 74811000 86767000 75322000 0 0 0 68290000 68047000 64124000 0 0 0 76602000 62870000 64442000 0 0 0 19402 1471 18795 360595;360596;360597;360598;360599;360600;360601;360602;360603;360604;360605;360606;360607;360608;360609;360610;360611;360612;360613;360614;360615;360616;360617;360618 219933;219934;219935;219936;219937;219938;219939;219940;219941;219942;219943;219944;219945;219946;219947;219948;219949;219950;219951;219952 219952 20 TALMTSR Oxidation (M) 794.39564 0.39563807 1184 P21599 pykA Pyruvate kinase II yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 2 2 1 1 1 1 1 10.742 11.567 2 0.009637 2802 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 90.777 90.777 257670000 9562300 8190600 6253900 0 0 0 40856000 34355000 39023000 0 0 0 26710000 18298000 18879000 0 0 0 26392000 25119000 4032800 0 0 0 19403 1184 18796 360619;360620;360621;360622;360623;360624;360625;360626;360627;360628;360629;360630;360631;360632 219953;219954 219954 499 2 TALMTSR Unmodified 778.40072 0.40072345 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.855 13.497 2 0.0011749 3931 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.66 80.138 2909500000 161300000 158740000 174530000 0 0 0 338000000 321410000 312950000 7459300 7101800 7337900 278280000 280370000 270620000 0 0 0 188420000 204850000 188150000 5944200 0 3982700 19404 1184 18796 360633;360634;360635;360636;360637;360638;360639;360640;360641;360642;360643;360644;360645;360646;360647;360648;360649 219955;219956;219957 219956 3 TALNECK Unmodified 834.39055 0.39055269 1553 P42588 patA Putrescine aminotransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 10.548 11.334 2 0.16525 2648 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 54.205 20.847 36086000 8279100 0 5453100 0 0 0 0 5657500 6555200 0 0 0 0 0 0 0 0 0 0 6902900 3238500 0 0 0 19405 1553 18797 360650;360651;360652;360653;360654;360655 219958 219958 0 TALNFVQTLSGVASK Unmodified 1534.8355 0.83550744 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 2 1 2 2 2 46.776 45.348 2;3 1.1812E-11 22599 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 171.32 164.94 384030000 48516000 48704000 39507000 1050500 0 0 36916000 33242000 31689000 0 0 1902500 17021000 18398000 14476000 0 0 0 31107000 33826000 27671000 0 0 0 19406 1334 18798 360656;360657;360658;360659;360660;360661;360662;360663;360664;360665;360666;360667;360668;360669;360670;360671;360672;360673;360674;360675;360676;360677;360678;360679 219959;219960;219961;219962 219960 4 TALNVSGSMTAGTLTSQWLK Unmodified 2065.0514 0.051390229 1913 P77529 ydjN Uncharacterized symporter YdjN yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 2 2 2 2 2 1 2 1 1 1 1 1 48.53 47.043 2;3 9.3967E-46 21880 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 254.1 246.06 248350000 0 0 7245600 0 3198400 0 15008000 19014000 10485000 14237000 19431000 18455000 24965000 24771000 13565000 0 0 0 28133000 15009000 16632000 6401400 5854900 5942400 19407 1913 18799 360680;360681;360682;360683;360684;360685;360686;360687;360688;360689;360690;360691;360692;360693;360694;360695;360696;360697;360698;360699;360700;360701;360702;360703;360704 219963;219964;219965;219966;219967;219968;219969;219970;219971;219972;219973;219974;219975;219976;219977;219978;219979 219978 16 TALTELYGMENPSSQPMAELWMGAHPK Unmodified 2988.382 0.3819852 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.2 50.952 3;4 5.4328E-31 24785 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 188.3 177.1 1839300000 127770000 116670000 124320000 0 0 0 155440000 174390000 173720000 0 0 0 152030000 169810000 190570000 0 0 0 156630000 150600000 147310000 0 0 0 19408 56 18800 360705;360706;360707;360708;360709;360710;360711;360712;360713;360714;360715;360716;360717;360718;360719;360720;360721;360722;360723;360724;360725;360726;360727;360728 219980;219981;219982;219983;219984;219985;219986;219987;219988;219989;219990;219991;219992;219993;219994;219995;219996;219997;219998;219999;220000;220001;220002 219988 23 TALTVIR Unmodified 772.48069 0.48068833 1369 P31473 ravA ATPase RavA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 20.172 20.572 2 0.0023307 8443 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.19 69.213 146040000 11634000 14006000 8014600 0 0 476590 20726000 17462000 19590000 0 0 0 9809800 8812000 8239400 0 0 0 12064000 7910400 7296000 0 0 0 19409 1369 18801 360729;360730;360731;360732;360733;360734;360735;360736;360737;360738;360739;360740;360741 220003;220004 220003 2 TALVANPWQLGNVAAMLER Unmodified 2053.0779 0.077879751 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 54.911 53.459 2;3 1.9249E-55 26279 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 278.16 263.6 1935400000 122830000 122350000 110610000 7236500 5793400 8122700 120600000 120390000 124710000 39564000 45023000 41269000 177780000 160440000 152790000 0 0 0 175780000 191290000 163440000 18585000 16739000 10028000 19410 882 18802 360742;360743;360744;360745;360746;360747;360748;360749;360750;360751;360752;360753;360754;360755;360756;360757;360758;360759;360760;360761;360762;360763;360764;360765;360766;360767;360768;360769;360770;360771;360772;360773;360774;360775;360776;360777;360778;360779;360780;360781;360782 220005;220006;220007;220008;220009;220010;220011;220012;220013;220014;220015;220016;220017;220018;220019;220020;220021 220010 17 TALYSWLFAR Unmodified 1226.6448 0.64479354 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.449 51.188 2 4.3896E-09 24914 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 194.2 181.16 1209800000 61103000 60818000 58113000 1345600 1397000 0 114450000 99508000 94612000 0 0 1355100 100210000 95686000 98289000 0 0 0 156730000 135390000 130790000 0 0 0 19411 92 18803 360783;360784;360785;360786;360787;360788;360789;360790;360791;360792;360793;360794;360795;360796;360797 220022;220023;220024;220025;220026;220027;220028;220029;220030;220031;220032;220033 220026 12 TAMAPKPATTTTVTR Unmodified 1545.8185 0.81847717 805 P0ADT2 ygiB UPF0441 protein YgiB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 1 2 2 2 2 2 1 13.133 13.624 2;3 0.00011288 3497 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 69.331 67.867 80444000 0 0 0 5017100 1895600 4980000 0 0 2191500 20221000 13598000 21474000 0 0 0 0 0 0 0 0 0 4999000 3499000 2568500 19412 805 18804 360798;360799;360800;360801;360802;360803;360804;360805;360806;360807;360808;360809;360810;360811;360812;360813;360814 220034;220035;220036;220037;220038;220039;220040 220035 7 TAMASGESQWITSPQAR Unmodified 1819.8523 0.85229649 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.827 28.476 2 2.6751E-75 13451 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 329.37 316.39 156240000 11129000 13605000 13704000 0 0 0 14300000 13023000 15726000 0 0 0 11356000 10882000 10087000 0 0 0 14825000 13956000 13649000 0 0 0 19413 1262 18805 360815;360816;360817;360818;360819;360820;360821;360822;360823;360824;360825;360826 220041;220042;220043;220044;220045;220046;220047;220048;220049;220050;220051 220042 11 TAMDDVWLK Unmodified 1077.5165 0.51648149 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 36.149 34.589 2 0.0067475 16620 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 69.825 66.456 1374800000 131340000 127670000 108450000 405260 0 0 114240000 106290000 107430000 0 0 0 102620000 89387000 102240000 0 0 0 122420000 131470000 130860000 0 0 0 19414 1505 18806 360827;360828;360829;360830;360831;360832;360833;360834;360835;360836;360837;360838;360839 220052;220053;220054;220055;220056;220057;220058;220059;220060;220061;220062;220063 220055 12 TANDFYIPEDEPFK Unmodified 1684.7621 0.76206772 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.834 41.157 2 1.6318E-08 20087 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 153.25 151.61 96512000 18926000 15553000 14109000 734400 705260 0 3738000 6278600 3654000 0 0 0 4314000 3276500 3515600 0 0 0 5716800 6550100 5638500 3802000 0 0 19415 1213 18807 360840;360841;360842;360843;360844;360845;360846;360847;360848;360849;360850;360851;360852;360853;360854 220064;220065;220066 220065 3 TANGCEAVCIFVNDDGSRPVLEELKK Unmodified 2920.4059 0.40589176 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.644 37.968 4 5.3852E-16 17699 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 118.9 116.76 462590000 33557000 34358000 32459000 694390 0 0 53603000 45614000 59555000 0 0 0 34072000 31240000 37171000 0 0 0 34940000 36533000 28791000 0 0 0 19416 1608 18808 360855;360856;360857;360858;360859;360860;360861;360862;360863;360864;360865;360866;360867 220067;220068;220069;220070;220071;220072;220073;220074;220075;220076;220077 220076 11 TANSGYLTR Unmodified 981.48796 0.48795855 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 2 1 1 1 1 1 1 13.599 14.121 2 2.2954E-08 3452 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 167.33 155.96 23897000000 195780000 194380000 192540000 0 19398000 17525000 140810000 179190000 175850000 1400500000 1241100000 1176300000 169650000 202880000 152450000 4728100000 4675100000 4900700000 217360000 227580000 217680000 1709800000 0 1762500000 19417 458 18809 360868;360869;360870;360871;360872;360873;360874;360875;360876;360877;360878;360879;360880;360881;360882;360883;360884;360885;360886;360887;360888;360889;360890;360891;360892;360893;360894 220078;220079;220080;220081;220082;220083;220084;220085;220086;220087;220088;220089;220090;220091;220092;220093;220094;220095;220096;220097;220098;220099;220100;220101;220102;220103;220104;220105;220106;220107;220108;220109;220110 220099 28 TANSGYLTRR Unmodified 1137.5891 0.58906958 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 12.085 12.262 3 6.4054E-09 2607 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 129.85 115.18 221800000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 87015000 0 95887000 0 0 0 12996000 14192000 11706000 19418 458 18810 360895;360896;360897;360898;360899;360900 220111;220112;220113;220114;220115;220116 220112 6 TANVVLNTAFGWPTIAVDTHIFR Unmodified 2542.3332 0.33324281 637 P0AB83 nth Endonuclease III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.237 54.293 3 3.4776E-10 20409 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 123.17 123.17 96760000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35345000 31175000 30240000 0 0 0 0 0 0 19419 637 18811 360901;360902;360903 220117;220118;220119 220119 3 TAPHIMVVER Unmodified 1151.6121 0.61211321 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 17.87 18.341 2;3 0.000584 7020 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.25 79.725 1061600000 28098000 29699000 25211000 8707700 6649100 7074300 75811000 76454000 83918000 20535000 26401000 25036000 52352000 48889000 50764000 0 5262900 3929600 86138000 83508000 97015000 77872000 72836000 69473000 19420 205 18812 360904;360905;360906;360907;360908;360909;360910;360911;360912;360913;360914;360915;360916;360917;360918;360919;360920;360921;360922;360923;360924;360925;360926;360927;360928;360929;360930;360931;360932;360933;360934;360935;360936;360937;360938;360939;360940;360941;360942;360943;360944;360945;360946;360947 220120;220121;220122;220123;220124;220125;220126;220127;220128;220129;220130;220131;220132;220133;220134;220135;220136;220137;220138;220139;220140;220141;220142;220143;220144;220145;220146;220147;220148;220149;220150 220128 31 TAPLMDDVLDYDK Unmodified 1494.6912 0.69121097 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 44.504 42.996 2 0.049233 21288 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 48.004 41.9 49085000 0 3136300 0 0 0 0 5783500 5402100 0 0 0 0 8859200 9095200 5607100 0 0 0 3513400 3654700 4033100 0 0 0 19421 1559 18813 360948;360949;360950;360951;360952;360953;360954;360955;360956 220151;220152 220151 0 TAPNIVAVER Unmodified 1068.5928 0.59275797 1157 P19319 narZ Respiratory nitrate reductase 2 alpha chain yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.816 21.591 2 0.062816 8954 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 45.368 36.154 37444000 0 0 0 2313700 2309200 2408600 7271700 8062700 8069000 3042400 2059100 1907600 0 0 0 0 0 0 0 0 0 0 0 0 19422 1157 18814 360957;360958;360959;360960;360961;360962;360963;360964;360965 220153;220154 220153 2 TAPSQVLK Unmodified 842.48617 0.48616764 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.922 13.763 2 0.0091855 4218 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 80.462 64.83 1043800000 178210000 167810000 212640000 0 0 0 41993000 53220000 42796000 0 0 0 54477000 45670000 48907000 0 0 0 80831000 59536000 57701000 0 0 0 19423 104 18815 360966;360967;360968;360969;360970;360971;360972;360973;360974;360975;360976;360977 220155;220156;220157;220158 220157 4 TAPWLENLEGGIDYLK Unmodified 1817.92 0.91996535 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 54.215 52.815 2 0.00012185 25103 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 105.65 93.854 138990000 12495000 0 0 0 0 0 0 0 0 0 0 0 29927000 0 18482000 0 0 0 29502000 22733000 25851000 0 0 0 19424 180 18816 360978;360979;360980;360981;360982;360983 220159 220159 1 TAQALLQGLGGLDTLYAEPEK Unmodified 2187.1423 0.14231373 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 1 1 2 2 2 2 2 2 1 2 53.016 51.913 2;3 9.7422E-43 25523 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 227.67 218.14 1825100000 38185000 344530000 298040000 1220300 1615700 2350900 121580000 35666000 27930000 0 0 0 180580000 162220000 0 31639000 24921000 41582000 244220000 33606000 235200000 0 0 0 19425 37 18817 360984;360985;360986;360987;360988;360989;360990;360991;360992;360993;360994;360995;360996;360997;360998;360999;361000;361001;361002;361003;361004;361005;361006;361007;361008;361009;361010;361011 220160;220161;220162;220163;220164;220165;220166;220167;220168;220169;220170;220171;220172;220173;220174;220175;220176 220172 16 TAQDLPQPLLWPQLQVSEGEK Unmodified 2376.2325 0.23252572 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.033 51.616 3 0.0001218 20816 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 70.315 67.553 72206000 3771800 3405800 3248800 0 2282800 4352000 0 3025600 3204400 5112400 5567400 8244500 0 3607700 4108600 0 0 0 6370400 6551000 5724400 3628600 0 0 19426 1488 18818 361012;361013;361014;361015;361016;361017;361018;361019;361020;361021;361022;361023;361024;361025;361026;361027 220177;220178 220177 2 TAQDNGDVDFGQNLIAR Unmodified 1832.8653 0.86530402 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 36.843 35.28 2 1.0329E-18 17013 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 186.17 178.62 90670000 12558000 11424000 10705000 0 0 0 0 0 7272500 0 0 0 6689200 6060100 5280800 0 0 0 8555100 11428000 10696000 0 0 0 19427 1784 18819 361028;361029;361030;361031;361032;361033;361034;361035;361036;361037 220179;220180;220181;220182;220183;220184 220181 5 TAQEAVSPDEAAR Unmodified 1343.6317 0.63172225 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 13.262 13.814 2 9.3494E-06 3380 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 147.74 145.35 78444000 0 0 0 15325000 11343000 12785000 0 0 0 4836600 5345200 6128400 0 0 2482700 0 0 0 0 0 0 7800900 6368300 6028300 19428 1899 18820 361038;361039;361040;361041;361042;361043;361044;361045;361046;361047 220185;220186;220187;220188;220189;220190 220188 6 TAQPGDHILVMSNGGFGGIHQK Unmodified 2263.1168 0.11678445 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 28.187 26.931 4 0.15033 11739 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 17.749 11.905 108870000 0 0 0 0 0 0 10604000 8669200 9605600 0 0 0 9574900 12794000 13780000 0 0 0 13403000 15350000 15091000 0 0 0 19429 1500 18821 361048;361049;361050;361051;361052;361053;361054;361055;361056 220191;220192 220192 2 TAQSVLVR Unmodified 872.50797 0.50796571 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.929 15.449 2 0.00013858 3954 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 156.4 100.8 8115400000 48880000 45922000 40050000 0 0 0 51996000 66391000 56464000 1139400000 1059800000 1040400000 52153000 42860000 41573000 0 818180000 849190000 66111000 59015000 52002000 816090000 981640000 787150000 19430 1616 18822 361057;361058;361059;361060;361061;361062;361063;361064;361065;361066;361067;361068;361069;361070;361071;361072;361073;361074;361075;361076;361077;361078;361079 220193;220194;220195;220196;220197;220198;220199;220200;220201;220202;220203;220204;220205;220206;220207;220208;220209 220193 8 TAQTPGGTGALR Unmodified 1128.5887 0.58873523 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.717 13.558 2 1.0559E-11 3802 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 186.92 151.63 4985400000 438950000 452540000 485610000 0 0 0 444710000 502680000 474250000 0 0 0 368920000 327140000 328440000 0 0 0 390260000 422650000 349260000 0 0 0 19431 31 18823 361080;361081;361082;361083;361084;361085;361086;361087;361088;361089;361090;361091 220210;220211;220212;220213;220214;220215;220216;220217;220218;220219;220220;220221 220219 12 TASEFGYLPLEHTLAVAEAVVTTQR Unmodified 2702.3915 0.39154555 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 54.805 53.344 3 5.4645E-22 25275 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 159.51 156.78 1189900000 138220000 0 0 0 0 0 119560000 105680000 108990000 0 0 0 104790000 98059000 88649000 0 0 0 153160000 145420000 127360000 0 0 0 19432 1143 18824 361092;361093;361094;361095;361096;361097;361098;361099;361100;361101 220222;220223;220224;220225;220226;220227;220228;220229;220230 220229 8 TASFLDIYIER Unmodified 1326.682 0.68196691 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 48.618 47.266 2 8.0239E-05 22204 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 123.63 113.84 51687000 0 0 3241000 0 0 0 4871300 6075700 5061000 0 0 0 6933200 6060000 5680100 0 0 0 4867700 4205100 4691500 0 0 0 19433 1559 18825 361102;361103;361104;361105;361106;361107;361108;361109;361110;361111 220231;220232;220233;220234 220232 4 TASFLYALGWTQHSVGAQNIR Unmodified 2319.176 0.17601389 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 46.683 45.328 3 0.15394 16234 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 30.652 27.461 17940000 0 0 4779700 0 1551200 0 0 0 0 0 0 0 0 0 0 0 0 0 6903400 0 4706000 0 0 0 19434 1393 18826 361112;361113;361114;361115 220235 220235 0 TASISPDVNDPAFR Unmodified 1488.7209 0.72087161 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.911 28.364 2 3.0472E-09 13260 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 177.57 154.25 211520000 22169000 20523000 17047000 3396600 3230800 3867800 12585000 11965000 14050000 5817300 5419100 5780000 9160700 7286400 9744600 0 0 0 17835000 14353000 18407000 2912500 3845000 2126800 19435 1083 18827 361116;361117;361118;361119;361120;361121;361122;361123;361124;361125;361126;361127;361128;361129;361130;361131;361132;361133;361134;361135;361136 220236;220237;220238;220239;220240;220241;220242;220243;220244;220245;220246;220247;220248;220249;220250;220251;220252;220253;220254 220249 19 TASITGACVALVDALQK Unmodified 1716.908 0.90802046 1049 P0CG19 rph Inactive ribonuclease PH yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 2 2 1 1 2 2 2 1 2 1 2 2 2 2 2 1 47.442 45.882 2;3 2.359E-10 22384 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 139.89 126.22 215150000 6736600 5879900 7788400 2338200 1703600 2365800 8812600 7517000 5329800 15079000 16445000 13876000 5106500 7707500 3822200 0 0 0 29254000 22341000 23458000 12031000 12623000 4935300 19436 1049 18828 361137;361138;361139;361140;361141;361142;361143;361144;361145;361146;361147;361148;361149;361150;361151;361152;361153;361154;361155;361156;361157;361158;361159;361160;361161;361162;361163;361164;361165;361166;361167;361168;361169;361170 220255;220256;220257;220258;220259;220260;220261;220262;220263;220264;220265;220266 220261 11 TASLAQEGATSSAVGFNIQLNDCDTNVASK Unmodified 3068.4357 0.43567157 87 P04128 fimA Type-1 fimbrial protein, A chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 43.719 41.234 3 1.4888E-31 16562 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 186.84 186.2 24587000 0 0 0 0 0 0 0 0 0 7497100 7708500 7637200 0 0 0 0 0 0 0 0 0 0 1744400 0 19437 87 18829 361171;361172;361173;361174 220267;220268;220269 220268 3 TASLINDAR Unmodified 959.50361 0.50360861 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 1 2 1 1 1 2 2 2 14.33 15.158 2 0.0069383 5973 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 80.165 57.094 350090000 5431400 6497000 4786100 0 0 0 46658000 27277000 46670000 0 0 0 21209000 23265000 25753000 0 0 0 45356000 44907000 52280000 0 0 0 19438 184 18830 361175;361176;361177;361178;361179;361180;361181;361182;361183;361184;361185;361186;361187;361188;361189;361190;361191;361192 220270;220271;220272 220271 2 TASPFAGYLAQAHINNAAAIVAGK Unmodified 2355.2335 0.23352877 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.908 43.406 3 1.3826E-06 20307 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 96.718 89.096 241490000 12484000 10348000 6807300 0 0 0 35550000 26912000 25995000 0 0 0 23500000 17477000 23611000 0 0 0 16705000 23972000 18124000 0 0 0 19439 1961 18831 361193;361194;361195;361196;361197;361198;361199;361200;361201;361202;361203;361204 220273;220274;220275;220276;220277;220278;220279 220278 7 TASSDLYQLFR Unmodified 1299.6459 0.64591575 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.802 42.287 2 4.358E-14 20548 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 204.36 201.06 333870000 35929000 35065000 33376000 0 0 0 36244000 34699000 30604000 0 0 0 18655000 15936000 19266000 0 0 0 26428000 25532000 22134000 0 0 0 19440 801 18832 361205;361206;361207;361208;361209;361210;361211;361212;361213;361214;361215;361216 220280;220281;220282;220283;220284;220285;220286 220283 3 TASSGDYNKNQYYGITAGPAYR Unmodified 2396.1033 0.10330246 483 P0A917 ompX Outer membrane protein X yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 26.199 24.874 3 8.373E-07 8803 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 101.17 101.17 95474000 0 0 0 6865400 6905900 6399100 0 0 0 11034000 12668000 12390000 0 0 0 3143700 0 0 0 0 0 11695000 12631000 11742000 19441 483 18833 361217;361218;361219;361220;361221;361222;361223;361224;361225;361226 220287;220288;220289;220290;220291;220292;220293;220294;220295;220296 220292 10 TASSLANQYHIDSEQAR Unmodified 1889.8868 0.88676774 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 1 2 2 1 2 19.69 20.207 2;3 3.2395E-24 7720 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 244.58 223.28 341550000 39165000 30005000 36109000 0 0 0 24007000 17711000 22486000 0 0 0 24838000 22541000 26291000 0 0 0 35535000 30547000 32317000 0 0 0 19442 953 18834 361227;361228;361229;361230;361231;361232;361233;361234;361235;361236;361237;361238;361239;361240;361241;361242;361243 220297;220298;220299;220300;220301;220302;220303;220304 220302 8 TASTGVFLGCSGYALPPK Unmodified 1824.908 0.90802046 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 39.707 37.985 2 3.3506E-05 18477 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 111.12 108.26 30811000 0 4625400 2519400 0 0 0 4839300 0 6745900 0 0 0 0 0 0 0 0 0 0 6051100 6029600 0 0 0 19443 124 18835 361244;361245;361246;361247;361248;361249 220305;220306;220307 220307 3 TATAQQLEYLK Unmodified 1264.6663 0.66631685 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.225 24.188 2 3.2359E-10 10746 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 186.25 162.82 2859900000 220520000 246340000 208260000 794920 804370 0 204870000 193410000 193330000 0 0 0 264890000 248710000 240840000 0 0 0 272180000 282270000 282650000 0 0 0 19444 1736 18836 361250;361251;361252;361253;361254;361255;361256;361257;361258;361259;361260;361261;361262;361263 220308;220309;220310;220311;220312;220313 220310 6 TATFMPK Unmodified 794.39966 0.39966081 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.464 18.09 2 0.024068 6893 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 73.039 73.039 2707000000 320920000 330210000 319250000 0 0 0 217600000 242490000 203610000 0 0 0 156720000 150700000 135410000 0 1673500 0 220510000 219070000 188880000 0 0 0 19445 508 18837 361264;361265;361266;361267;361268;361269;361270;361271;361272;361273;361274;361275;361276 220314;220315;220316;220317;220318;220319;220320;220321;220322;220323;220324;220325 220314 12 TATPATASQFYTVK Unmodified 1484.7511 0.75110911 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 2 2 2 1 1 2 2 1 1 1 2 2 1 1 1 27.171 25.945 2;3 2.0367E-08 12019 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 189.57 189.18 5832800000 1073800000 1160700000 910370000 232720000 224860000 248140000 372510000 358870000 380220000 143860000 121050000 115300000 54868000 46540000 52779000 14267000 7571600 7222300 89901000 90355000 87310000 13086000 12209000 14265000 19446 783 18838 361277;361278;361279;361280;361281;361282;361283;361284;361285;361286;361287;361288;361289;361290;361291;361292;361293;361294;361295;361296;361297;361298;361299;361300;361301;361302;361303;361304;361305;361306;361307;361308;361309;361310;361311;361312;361313;361314;361315;361316;361317;361318;361319 220326;220327;220328;220329;220330;220331;220332;220333;220334;220335;220336;220337;220338;220339;220340;220341;220342;220343;220344;220345;220346;220347;220348;220349;220350;220351;220352;220353;220354;220355;220356;220357;220358;220359 220334 31 TAVAEYPTK Unmodified 978.50221 0.50221163 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.515 14.122 2 0.00035747 4371 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 112.84 87.919 1599200000 0 116410000 126000000 4554100 2488000 3972900 136670000 127790000 132450000 29585000 26586000 23811000 122430000 121100000 101590000 8597700 6507300 6961200 180870000 153460000 144700000 0 11846000 10803000 19447 882 18839 361320;361321;361322;361323;361324;361325;361326;361327;361328;361329;361330;361331;361332;361333;361334;361335;361336;361337;361338;361339;361340;361341 220360;220361;220362;220363;220364;220365;220366;220367;220368;220369 220363 9 TAVAYPPASLVNTFGEWMAK Unmodified 2152.0663 0.066312011 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.872 53.407 2 3.1168E-07 26583 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.59 140.93 634430000 30450000 29539000 30744000 0 0 0 66098000 64725000 46633000 0 0 0 70739000 70971000 68281000 0 0 0 54246000 53681000 48322000 0 0 0 19448 1487 18840 361342;361343;361344;361345;361346;361347;361348;361349;361350;361351;361352;361353 220370;220371;220372;220373;220374 220370 5 TAVDTYR Unmodified 824.40283 0.40283194 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.127 12.768 2 0.00043902 3597 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 154.11 135.45 3167100000 487210000 0 504000000 0 4670700 0 230940000 229040000 197350000 3547100 2842200 2953900 201540000 0 195110000 1724500 0 0 391730000 373130000 338450000 0 0 2845500 19449 1444 18841 361354;361355;361356;361357;361358;361359;361360;361361;361362;361363;361364;361365;361366;361367;361368;361369 220375;220376;220377;220378 220376 3 TAVEAAIAR Unmodified 900.50288 0.50288033 1921 P77611 rsxC Electron transport complex subunit RsxC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.791 16.607 2 0.043177 5754 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 56.122 8.0067 271600000 40003000 40198000 39893000 0 0 0 17158000 13369000 13631000 0 0 0 14609000 14346000 13048000 0 0 0 22384000 22463000 20500000 0 0 0 19450 1921 18842 361370;361371;361372;361373;361374;361375;361376;361377;361378;361379;361380;361381 220379;220380;220381;220382 220380 4 TAVEGGFLR Unmodified 948.50288 0.50288033 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.231 23.426 2 0.00089562 10295 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.458 75.722 364220000 10184000 10031000 12749000 0 0 0 37205000 27316000 35051000 0 0 0 30699000 27727000 25268000 0 7998700 4271100 44246000 47667000 39441000 0 2337700 2028100 19451 1307 18843 361382;361383;361384;361385;361386;361387;361388;361389;361390;361391;361392;361393;361394;361395;361396;361397 220383;220384;220385 220384 3 TAVGQTIQIGSGITK Unmodified 1472.8199 0.81985737 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 29.582 28.27 2;3 1.5185E-09 10689 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 188.29 135.16 2824700000 203200000 198730000 197930000 38798000 35836000 38385000 230080000 210350000 175580000 100400000 90297000 92843000 151390000 142520000 124070000 17373000 10628000 11123000 201660000 199320000 235750000 33789000 42508000 42185000 19452 502 18844 361398;361399;361400;361401;361402;361403;361404;361405;361406;361407;361408;361409;361410;361411;361412;361413;361414;361415;361416;361417;361418;361419;361420;361421;361422;361423;361424;361425;361426;361427;361428;361429;361430;361431;361432;361433;361434;361435 220386;220387;220388;220389;220390;220391;220392;220393;220394;220395;220396;220397;220398;220399;220400;220401;220402;220403;220404;220405;220406;220407;220408;220409;220410 220390 24 TAVINAASGR Unmodified 958.51959 0.51959303 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.204 13.811 2 1.4356E-06 4096 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 164.96 123.3 7073000000 114220000 119080000 141410000 4791200 4963900 4320200 724360000 817940000 718970000 2473000 1967100 1859600 666230000 647730000 587370000 2116500 1277000 1461200 844240000 806140000 830710000 10859000 10392000 8148400 19453 895 18845 361436;361437;361438;361439;361440;361441;361442;361443;361444;361445;361446;361447;361448;361449;361450;361451;361452;361453;361454;361455;361456;361457;361458;361459 220411;220412;220413;220414;220415;220416;220417;220418;220419;220420;220421 220416 5 TAVLFCEIVNR Unmodified 1320.686 0.68600643 1335 P30014 rnt Ribonuclease T yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.01 39.593 2 1.5934E-05 18472 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.75 132.22 173050000 16653000 16376000 15164000 0 0 0 10404000 12458000 10208000 0 0 0 12079000 11257000 13595000 707960 1531300 0 18115000 17351000 17154000 0 0 0 19454 1335 18846 361460;361461;361462;361463;361464;361465;361466;361467;361468;361469;361470;361471;361472;361473 220422;220423;220424;220425;220426;220427;220428;220429;220430;220431 220430 6 TAVLVFLGAEYAR Unmodified 1408.7715 0.77145062 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 50.02 48.73 2 0.1275 22935 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 39.917 36.03 18654000 11618000 0 0 0 0 0 0 0 0 0 0 0 2029000 2071700 1747500 0 0 0 0 1188100 0 0 0 0 19455 427 18847 361474;361475;361476;361477;361478 220432 220432 0 TAVNHPLGK Unmodified 935.51886 0.51886475 164 P07639 aroB 3-dehydroquinate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.735 11.561 2 0.00084346 2802 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 99.802 56.736 233160000 28040000 23587000 22402000 0 0 0 0 19952000 22655000 0 0 0 16911000 16861000 17718000 0 0 0 22099000 20084000 22844000 0 0 0 19456 164 18848 361479;361480;361481;361482;361483;361484;361485;361486;361487;361488;361489 220433;220434;220435 220435 3 TAVQHVILTR Unmodified 1136.6666 0.66659162 1734 P69451 fadD Long-chain-fatty-acid--CoA ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 15.638 16.383 3 0.11663 4075 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 34.755 31.038 125810000 23007000 21673000 26399000 678930 1438100 962290 9285000 5758700 6773100 0 2260800 0 7298500 0 0 0 0 0 0 8406100 11870000 0 0 0 19457 1734 18849 361490;361491;361492;361493;361494;361495;361496;361497;361498;361499;361500;361501;361502 220436 220436 0 TAWENIIAPQLDAR Unmodified 1596.826 0.82600539 900 P0AEZ9 moaB Molybdenum cofactor biosynthesis protein B yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 46.63 45.965 2 2.785E-05 16541 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 89.731 83.072 20990000 0 0 0 905920 1075300 751200 0 0 0 0 0 0 0 0 0 6244500 6837500 5175400 0 0 0 0 0 0 19458 900 18850 361503;361504;361505;361506;361507;361508 220437;220438;220439 220438 3 TAWIHEQAK Unmodified 1082.5509 0.55089316 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 12.758 13.525 2;3 0.00046796 4111 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.48 95.476 1383400000 136120000 130940000 129450000 0 0 1798800 187220000 184480000 177820000 2175800 1830600 2302700 92293000 99161000 86056000 0 0 0 52406000 51076000 48283000 0 0 0 19459 585 18851 361509;361510;361511;361512;361513;361514;361515;361516;361517;361518;361519;361520;361521;361522;361523;361524;361525;361526;361527;361528;361529;361530;361531;361532;361533;361534;361535;361536 220440;220441;220442;220443;220444;220445;220446;220447;220448;220449;220450;220451;220452;220453;220454;220455;220456;220457;220458;220459;220460 220451 19 TAWIPLK Unmodified 827.49052 0.49052473 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.661 31.25 2 0.013921 15039 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 83.287 77.749 227560000 10316000 7490200 5474000 2702800 3233600 2971000 15114000 14564000 12806000 8440100 8182100 9224300 12612000 14555000 11770000 2581700 1686600 1140600 21421000 20657000 24273000 4909100 5110100 6323200 19460 807 18852 361537;361538;361539;361540;361541;361542;361543;361544;361545;361546;361547;361548;361549;361550;361551;361552;361553;361554;361555;361556;361557;361558;361559;361560 220461;220462;220463;220464;220465;220466;220467;220468;220469;220470;220471;220472;220473;220474;220475;220476;220477;220478;220479;220480 220466 20 TAYFVDAPYQVDK Unmodified 1515.7246 0.72456001 110 P05458 ptrA Protease 3 yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 35.56 34.192 2 0.028311 16338 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 55.754 33.113 28189000 6077000 6671500 5793600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9646400 0 0 0 19461 110 18853 361561;361562;361563;361564 220481 220481 0 TAYWELVR Unmodified 1036.5342 0.53418046 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.463 34.871 2 0.0003557 16726 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143.85 140.39 7641000000 422020000 446290000 455930000 12451000 12447000 12374000 1015900000 1024000000 1055100000 46292000 41005000 34801000 485180000 431490000 374680000 13484000 13551000 0 601610000 595340000 512340000 0 16736000 17951000 19462 1046 18854 361565;361566;361567;361568;361569;361570;361571;361572;361573;361574;361575;361576;361577;361578;361579;361580;361581;361582;361583;361584;361585;361586 220482;220483;220484;220485;220486;220487;220488;220489;220490;220491;220492;220493;220494;220495;220496 220490 14 TCAFIDAEHALDPIYAR Unmodified 1961.9305 0.93054681 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 43.951 42.479 2;3 4.423E-75 20599 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 322.7 317.63 4986000000 368310000 377950000 340930000 38263000 34672000 29749000 337610000 329060000 314850000 249560000 218330000 217660000 261740000 237920000 247180000 68991000 72214000 70143000 272000000 319350000 335620000 77621000 71829000 94391000 19463 343 18855 361587;361588;361589;361590;361591;361592;361593;361594;361595;361596;361597;361598;361599;361600;361601;361602;361603;361604;361605;361606;361607;361608;361609;361610;361611;361612;361613;361614;361615;361616;361617;361618;361619;361620;361621;361622;361623;361624;361625;361626;361627;361628;361629;361630;361631;361632;361633;361634 220497;220498;220499;220500;220501;220502;220503;220504;220505;220506;220507;220508;220509;220510;220511;220512;220513;220514;220515;220516;220517;220518;220519;220520;220521;220522;220523;220524;220525;220526;220527;220528;220529;220530;220531;220532;220533;220534;220535;220536;220537;220538;220539;220540;220541 220537 45 TCDPTDR Unmodified 863.34433 0.34433078 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 6.9725 7.83 2 0.0035973 1490 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.32 86.762 349520000 13428000 19823000 25079000 0 0 0 64795000 61358000 60631000 0 0 0 11621000 10825000 14617000 0 0 0 21791000 24306000 21242000 0 0 0 19464 273 18856 361635;361636;361637;361638;361639;361640;361641;361642;361643;361644;361645;361646 220542;220543;220544;220545;220546;220547;220548;220549;220550;220551;220552;220553;220554;220555;220556;220557;220558;220559;220560 220555 19 TCEIDLESHGEFETTSALHTYFNVGDIAK Unmodified 3283.4979 0.49793747 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 46.753 45.219 4 0.0098686 22549 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 42.659 40.085 75563000 0 6621600 0 2695900 2025900 2347200 12029000 12655000 13686000 0 0 0 0 0 0 0 0 0 11425000 12078000 0 0 0 0 19465 1510 18857 361647;361648;361649;361650;361651;361652;361653;361654;361655 220561 220561 1 TCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFK Unmodified 4109.0588 0.058849957 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 2 55.736 54.317 3;4 1.0524E-22 20086 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 140.54 140.27 381360000 0 0 0 62758000 44911000 50570000 0 36014000 35578000 15139000 24978000 5093000 11394000 13651000 0 0 0 0 21332000 0 0 28034000 0 31906000 19466 548 18858 361656;361657;361658;361659;361660;361661;361662;361663;361664;361665;361666;361667;361668;361669;361670;361671;361672 220562;220563;220564;220565;220566;220567;220568;220569;220570 220567 9 TCIHGDQVLAQPLGADR Unmodified 1849.9105 0.91048007 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 24.993 23.914 2;3 8.8295E-08 10423 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.11 106.86 180660000 43332000 49029000 40311000 0 0 0 8461200 5993100 5968500 1637400 1558000 1968100 3453400 3651100 3372800 0 0 0 4278200 3351400 4295900 0 0 0 19467 1181 18859 361673;361674;361675;361676;361677;361678;361679;361680;361681;361682;361683;361684;361685;361686;361687;361688;361689;361690 220571;220572;220573;220574;220575 220574 4 TCIILSAPASQHEDLR Unmodified 1809.9043 0.90433206 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 26.866 25.907 3 3.6605E-09 11675 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.35 107.2 89535000 24258000 21655000 19240000 0 0 0 0 0 0 0 0 0 0 5819600 6365300 0 0 0 0 6563700 5634200 0 0 0 19468 1878 18860 361691;361692;361693;361694;361695;361696;361697 220576;220577;220578 220578 3 TCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPK Unmodified 4384.1299 0.12988038 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 54.613 53.196 4;5 2.5157E-27 21274 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 138.57 138.5 327370000 17684000 16622000 25013000 0 19427000 21605000 18382000 19351000 20335000 0 0 0 11835000 9401500 7622800 0 0 0 21322000 0 0 30889000 32466000 55416000 19469 679 18861 361698;361699;361700;361701;361702;361703;361704;361705;361706;361707;361708;361709;361710;361711;361712;361713;361714 220579;220580;220581;220582;220583;220584 220579 6 TCPTGAIHFGTK Unmodified 1288.6234 0.62340617 599 P0AAJ5;P0AAJ3 fdoH;fdnH Formate dehydrogenase-O iron-sulfur subunit;Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit yes no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 17.847 18.271 2;3 0.0083933 4889 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 50.467 48.328 80102000 6633900 0 0 5736700 5120700 5414200 3268600 3129600 3530500 7240600 4456500 4425300 0 0 0 0 0 3836000 11398000 2727300 0 1813200 6030100 5340800 19470 599 18862 361715;361716;361717;361718;361719;361720;361721;361722;361723;361724;361725;361726;361727;361728;361729;361730;361731;361732;361733;361734;361735 220585;220586;220587;220588;220589 220589 4 TCVGSTWCR Unmodified 1125.4695 0.46954807 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.651 17.408 2 8.5488E-05 6251 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 139.88 135.52 166010000 6981200 8779900 6554700 0 0 0 15579000 14497000 13896000 0 0 0 15775000 17316000 16516000 0 0 0 15533000 18092000 16489000 0 0 0 19471 180 18863 361736;361737;361738;361739;361740;361741;361742;361743;361744;361745;361746;361747 220590;220591;220592;220593;220594;220595;220596;220597;220598;220599;220600 220592 11 TDADAADLITSDCDPYDSEFITGER Unmodified 2776.1658 0.16576388 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 50.255 48.856 2;3 9.78E-84 23764 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 388.83 381.94 8322900000 1636500000 1754700000 1847800000 9659700 9695700 7523800 454890000 489070000 490720000 0 0 0 191450000 180860000 232860000 0 0 0 338080000 351150000 327840000 0 0 0 19472 517 18864 361748;361749;361750;361751;361752;361753;361754;361755;361756;361757;361758;361759;361760;361761;361762;361763;361764;361765;361766;361767;361768;361769;361770;361771;361772;361773;361774;361775;361776 220601;220602;220603;220604;220605;220606;220607;220608;220609;220610;220611;220612;220613;220614;220615;220616;220617;220618;220619;220620;220621;220622;220623;220624;220625;220626;220627 220608 27 TDAEQAQELAR Unmodified 1230.584 0.58404378 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.045 15.712 2 1.0248E-11 5197 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 237.61 224.1 1119200000 106890000 104690000 92267000 1371300 1351200 1444200 99006000 86277000 90213000 2634400 3446000 3239400 101610000 100560000 126770000 0 0 0 97452000 0 95132000 4831200 0 0 19473 319 18865 361777;361778;361779;361780;361781;361782;361783;361784;361785;361786;361787;361788;361789;361790;361791;361792;361793;361794 220628;220629;220630;220631;220632;220633;220634;220635;220636;220637;220638 220635 8 TDAGMFDVSHMTIVDLR Unmodified 1906.8917 0.89171846 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 49.64 48.252 2;3 5.2892E-89 22511 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 339.87 321.25 3440500000 247460000 192310000 214470000 0 1334000 0 325850000 287440000 350100000 0 0 0 332440000 279920000 275380000 0 0 0 285920000 326660000 321200000 0 0 0 19474 1294 18866 361795;361796;361797;361798;361799;361800;361801;361802;361803;361804;361805;361806;361807;361808;361809;361810;361811;361812;361813;361814;361815;361816;361817;361818;361819 220639;220640;220641;220642;220643;220644;220645;220646;220647;220648;220649;220650;220651;220652;220653;220654;220655;220656;220657;220658;220659;220660;220661;220662 220662 24 TDALAVEGLDAAIER Unmodified 1542.789 0.78895118 1914 P77541 prpB 2-methylisocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 43.518 42.179 2;3 2.6656E-07 20640 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.61 161.91 321350000 110480000 104840000 106030000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19475 1914 18867 361820;361821;361822;361823;361824;361825 220663;220664;220665;220666 220663 4 TDALLEIAAITLK Unmodified 1370.8021 0.80208205 1335 P30014 rnt Ribonuclease T yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.937 53.463 2 0.000503 26150 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 80.979 76.528 222620000 19566000 15684000 19750000 0 0 0 16248000 13959000 11232000 0 0 0 18626000 20737000 20692000 0 0 0 23828000 20919000 21380000 0 0 0 19476 1335 18868 361826;361827;361828;361829;361830;361831;361832;361833;361834;361835;361836;361837 220667;220668;220669 220667 0 TDAMLEK Unmodified 806.3844 0.38440468 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 2 1 1 1 1 12.941 13.689 2 0.016882 3410 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 77.058 60.353 70982000 0 13735000 11583000 3746300 0 3524500 0 0 0 0 585990 0 0 16045000 15499000 0 0 0 0 0 0 0 0 6262700 19477 122 18869 361838;361839;361840;361841;361842;361843;361844;361845;361846;361847;361848;361849;361850 220670;220671;220672;220673;220674;220675;220676 220671 6 TDAPVALYGNDK Unmodified 1262.6143 0.61428128 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 1 23.956 23.072 2 1.585E-05 10382 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.68 119.38 48729000 0 0 0 0 0 0 0 13089000 3397600 0 0 0 8665800 7050600 6789600 0 0 0 4365300 5370600 0 0 0 0 19478 1947 18870 361851;361852;361853;361854;361855;361856;361857;361858 220677;220678;220679;220680 220677 4 TDAPVALYGNDKDVDAVK Unmodified 1889.9371 0.93707198 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 26.453 25.386 2;3 8.6549E-29 11619 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 211.82 190.25 1332500000 21695000 21473000 21380000 0 0 0 135480000 114830000 133960000 0 0 0 182660000 182180000 164130000 0 0 0 120230000 115700000 118750000 0 0 0 19479 1947 18871 361859;361860;361861;361862;361863;361864;361865;361866;361867;361868;361869;361870;361871;361872;361873;361874;361875;361876;361877;361878;361879;361880 220681;220682;220683;220684;220685;220686;220687;220688;220689;220690;220691;220692 220686 12 TDAQNTAAYIGNGDR Unmodified 1565.707 0.70701246 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.681 18.886 2 5.9995E-15 5857 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 186.81 186.81 65428000 0 0 0 2310000 2141800 1647700 0 2540400 0 12878000 9486400 8602400 0 0 3700600 2626800 1904400 1591400 6819500 0 0 3601900 3152500 2424600 19480 144 18872 361881;361882;361883;361884;361885;361886;361887;361888;361889;361890;361891;361892;361893;361894;361895 220693;220694;220695;220696;220697 220693 5 TDAQNTAAYIGNGDRAETYTGGLK Unmodified 2486.1674 0.16735928 144 P06996 ompC Outer membrane protein C yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.19 26.003 3 3.0833E-15 9763 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 144.22 140.82 70540000 0 0 0 5288100 3217900 5556100 0 0 0 12083000 10276000 11490000 0 0 0 3794500 3151700 2717700 0 0 0 4291900 3470400 5201800 19481 144 18873 361896;361897;361898;361899;361900;361901;361902;361903;361904;361905;361906;361907 220698;220699;220700;220701;220702;220703;220704;220705;220706 220698 9 TDASAEGLAR Unmodified 989.47779 0.47778779 1969 Q46939 yqeF Probable acetyl-CoA acetyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 12.956 13.718 2 0.057798 4101 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 47.198 35.829 35811000 8946400 12227000 0 0 0 0 0 1187000 0 0 0 0 0 0 0 0 0 0 7390800 0 6059800 0 0 0 19482 1969 18874 361908;361909;361910;361911;361912 220707 220707 1 TDAVELR Unmodified 802.41848 0.418482 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 15.031 15.501 2 0.00043973 5104 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 154.09 79.378 1078400000 125830000 128590000 102990000 0 0 0 223830000 250270000 235680000 3670000 3384400 4201000 0 0 0 0 0 0 0 0 0 0 0 0 19483 1191 18875 361913;361914;361915;361916;361917;361918;361919;361920;361921;361922 220708;220709;220710;220711;220712;220713;220714 220710 7 TDDDLYDTVIGYR Unmodified 1544.6995 0.69946747 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.117 43.677 2 2.1964E-19 21509 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 225.67 218.47 195970000 24067000 23897000 25603000 0 0 0 19997000 21305000 17997000 0 0 0 10185000 11522000 9891800 0 0 0 11389000 9887700 10223000 0 0 0 19484 88 18876 361923;361924;361925;361926;361927;361928;361929;361930;361931;361932;361933;361934 220715;220716;220717;220718;220719;220720;220721;220722;220723;220724 220716 10 TDDPVEAIEQMEIELSR Unmodified 1973.9252 0.92518666 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.491 54.018 2 0.064454 26626 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 65.329 52.562 148050000 0 11071000 14421000 0 0 0 10248000 5973900 8417500 0 0 0 13822000 11033000 12480000 0 0 0 21490000 17928000 16998000 4163200 0 0 19485 1197 18877 361935;361936;361937;361938;361939;361940;361941;361942;361943;361944;361945;361946 220725 220725 0 TDDTANAQQAEWR Unmodified 1504.6542 0.65424861 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.519 18.023 2 1.0242E-23 6794 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 228.64 227.53 95495000 10964000 8083300 6941600 1843500 1756000 1297100 6248200 5723400 6335500 3196900 2731600 3177900 4884600 4166200 3330900 0 0 0 7140700 6463900 7259100 1405000 1384600 1160800 19486 1083 18878 361947;361948;361949;361950;361951;361952;361953;361954;361955;361956;361957;361958;361959;361960;361961;361962;361963;361964;361965;361966;361967 220726;220727;220728;220729 220727 3 TDEYNIK Unmodified 881.41306 0.41306227 1683 P64534 rcnB Nickel/cobalt homeostasis protein RcnB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.105 13.982 2 0.0026472 4331 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.28 65.396 534140000 51505000 49252000 47003000 838400 0 0 48323000 38712000 37279000 0 0 0 50400000 40518000 51334000 0 0 0 34276000 38953000 45741000 0 0 0 19487 1683 18879 361968;361969;361970;361971;361972;361973;361974;361975;361976;361977;361978;361979;361980 220730;220731;220732;220733;220734;220735;220736;220737;220738;220739 220730 9 TDGFVITHGTDTMEETAYFLDLTVK Unmodified 2803.3262 0.32622768 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.362 52.9 3 1.9689E-15 25026 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 145.13 142.2 634180000 0 0 0 0 0 0 82102000 75795000 63304000 0 0 0 93299000 93185000 85074000 0 0 0 47368000 44024000 50035000 0 0 0 19488 40 18880 361981;361982;361983;361984;361985;361986;361987;361988;361989 220740 220740 1 TDGKPAVCMACSGPGATNLVTAIADAR Unmodified 2703.2779 0.27785448 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.336 40.644 3 1.3856E-16 19710 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.63 152.08 142910000 33342000 25176000 34588000 723390 638310 0 6275300 0 5041000 0 0 0 5783900 4972600 0 0 0 0 12235000 7382900 6747100 0 0 0 19489 173 18881 361990;361991;361992;361993;361994;361995;361996;361997;361998;361999;362000;362001 220741;220742;220743 220743 3 TDGQMTNNNLLMGK Unmodified 1535.7072 0.70721216 1926 P77689 sufD FeS cluster assembly protein SufD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.087 25.95 2 5.2463E-11 12075 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 169.37 166.4 109140000 12010000 13925000 10822000 0 0 0 15337000 10600000 14713000 0 0 0 7041300 6075900 4523100 0 0 0 0 5417700 8674400 0 0 0 19490 1926 18882 362002;362003;362004;362005;362006;362007;362008;362009;362010;362011;362012;362013 220744;220745;220746;220747;220748;220749;220750;220751;220752 220745 9 TDGSPTYNFCVVVDDWDMEITHVIR Unmodified 2968.3371 0.3371435 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.188 53.714 3 5.2553E-41 26314 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 217.83 216.84 1169600000 72562000 76096000 63338000 0 0 0 86739000 99988000 88719000 0 0 0 110470000 100380000 98139000 0 0 0 118180000 132280000 122730000 0 0 0 19491 92 18883 362014;362015;362016;362017;362018;362019;362020;362021;362022;362023;362024;362025 220753;220754;220755;220756;220757;220758;220759;220760;220761;220762 220758 10 TDGSSTLASFGER Unmodified 1326.6052 0.60517315 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.192 25.052 2 9.1144E-18 11420 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 219.03 215.46 1045200000 30316000 28379000 23276000 8191000 7803300 7664000 107630000 103590000 105290000 69738000 69710000 81221000 52027000 46571000 42001000 6655400 3802100 4512800 68197000 67772000 64032000 14702000 13823000 18307000 19492 1944 18884 362026;362027;362028;362029;362030;362031;362032;362033;362034;362035;362036;362037;362038;362039;362040;362041;362042;362043;362044;362045;362046;362047;362048;362049 220763;220764;220765;220766;220767;220768;220769;220770;220771;220772;220773;220774;220775;220776;220777;220778;220779;220780;220781;220782;220783 220769 17 TDHILFIASGAFQIAK Unmodified 1730.9356 0.93555583 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.797 45.161 3 2.0005E-06 18155 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 90.444 89.338 106060000 5904100 0 0 0 1190500 0 11059000 7226500 8333400 9397400 9882800 7038100 6013100 5875600 5813400 0 0 0 7288700 8631000 7937800 1883200 0 2580600 19493 245 18885 362050;362051;362052;362053;362054;362055;362056;362057;362058;362059;362060;362061;362062;362063;362064;362065 220784;220785;220786;220787;220788 220785 4 TDHILFIASGAFQIAKPSDLIPELQGR Unmodified 2936.576 0.57599228 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 53.643 52.671 4 3.9474E-09 21131 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 111.84 109.88 129370000 0 0 0 6889600 0 0 0 0 0 33505000 21701000 12504000 0 0 0 7230200 9042500 12080000 0 0 0 8236100 8522200 9663300 19494 245 18886 362066;362067;362068;362069;362070;362071;362072;362073;362074;362075 220789;220790;220791;220792;220793;220794 220791 5 TDHKELSEHLMLVDLAR Unmodified 2006.0255 0.025509829 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 1 By MS/MS 1 31.259 29.757 4 0.0026508 10104 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 43.454 42.422 4100600 0 0 0 0 0 4100600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19495 46 18887 362076 220795 220795 1 TDHQDLIIFENAAFGR Unmodified 1845.901 0.90096124 207 P09158 speE Polyamine aminopropyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 45.042 43.621 2;3 8.7526E-24 21190 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 260.28 248.01 1202000000 266820000 222200000 216500000 0 0 536990 44649000 47482000 42506000 0 0 0 49353000 52252000 46366000 0 0 0 67663000 75899000 69757000 0 0 0 19496 207 18888 362077;362078;362079;362080;362081;362082;362083;362084;362085;362086;362087;362088;362089;362090;362091;362092;362093;362094;362095;362096;362097;362098;362099;362100;362101 220796;220797;220798;220799;220800;220801;220802;220803;220804;220805;220806;220807;220808;220809;220810;220811;220812;220813;220814;220815;220816;220817;220818 220809 23 TDIAQLLGK Unmodified 957.5495 0.54949617 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.573 36.185 2 0.0005527 17780 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.29 77.219 589950000 73174000 77373000 72000000 1128700 1032300 1157300 103040000 89360000 101650000 0 0 0 9733200 9312900 11018000 1150700 381150 537750 13399000 12135000 12359000 0 0 0 19497 498 18889 362102;362103;362104;362105;362106;362107;362108;362109;362110;362111;362112;362113;362114;362115;362116;362117;362118;362119;362120 220819;220820;220821;220822;220823;220824;220825;220826;220827;220828;220829;220830 220821 12 TDIAQLLGKDADNLLQHR Unmodified 2020.0702 0.070151836 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 1 1 1 1 45.388 43.93 3;4 1.5121E-14 21475 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.18 119.72 479230000 53899000 57096000 57547000 0 0 0 95332000 102910000 85855000 0 0 0 5036500 3894300 5870200 0 0 0 0 5436600 6345100 0 0 0 19498 498 18890 362121;362122;362123;362124;362125;362126;362127;362128;362129;362130;362131;362132;362133;362134;362135;362136;362137 220831;220832;220833;220834;220835;220836;220837;220838;220839;220840 220836 10 TDIDDVTQLAK Unmodified 1217.6139 0.61394692 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.496 31.019 2 5.8981E-07 14558 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.86 106.04 566420000 2286600 54496000 0 0 0 0 55516000 52208000 48232000 3551700 0 0 43045000 44916000 46437000 0 0 0 78962000 72702000 64065000 0 0 0 19499 1210 18891 362138;362139;362140;362141;362142;362143;362144;362145;362146;362147;362148;362149;362150 220841;220842;220843;220844;220845;220846;220847;220848;220849;220850;220851 220848 11 TDIDKIR Unmodified 859.47633 0.47633123 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.34 12.937 2 0.0016815 2728 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 139.92 102.27 6649300000 0 10223000 7560400 1188200000 1120500000 1303700000 10877000 6646800 9576300 88317000 74287000 72709000 0 3581200 5616900 38219000 18790000 21666000 8851600 8598600 8783300 858860000 859100000 924600000 19500 542 18892 362151;362152;362153;362154;362155;362156;362157;362158;362159;362160;362161;362162;362163;362164;362165;362166;362167;362168;362169;362170;362171;362172 220852;220853;220854;220855;220856;220857;220858;220859;220860;220861;220862;220863 220861 12 TDINQALNR Unmodified 1043.536 0.53597137 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 17.5 18.062 2 3.9936E-13 6501 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.11 181.23 611510000 0 99849000 0 0 0 0 188400000 169970000 148160000 0 0 0 0 0 0 0 0 0 0 0 5132400 0 0 0 19501 1662 18893 362173;362174;362175;362176;362177;362178;362179;362180 220864;220865;220866;220867;220868;220869;220870 220870 7 TDITELEAFR Unmodified 1193.5928 0.59281755 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 2 2 1 3 1 1 1 2 1 1 1 1 1 2 2 3 3 2 1 40.154 38.467 2;3 1.2853E-17 18463 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 245.16 234.52 8667600000 625090000 636410000 568780000 256650000 291930000 260490000 626520000 557040000 571610000 32381000 29851000 30969000 450410000 398630000 357450000 10681000 6115500 5289300 699430000 723750000 714160000 311180000 274390000 228370000 19502 133 18894 362181;362182;362183;362184;362185;362186;362187;362188;362189;362190;362191;362192;362193;362194;362195;362196;362197;362198;362199;362200;362201;362202;362203;362204;362205;362206;362207;362208;362209;362210;362211;362212;362213;362214;362215;362216;362217;362218;362219;362220;362221 220871;220872;220873;220874;220875;220876;220877;220878;220879;220880;220881;220882;220883;220884;220885;220886;220887;220888;220889;220890;220891;220892;220893;220894;220895;220896;220897;220898 220897 28 TDITELEAFRK Unmodified 1321.6878 0.68778057 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 30.312 28.918 2;3 9.6554E-20 10721 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 237.61 209.41 9861100000 267980000 263400000 225020000 1013500000 907660000 975860000 331700000 307380000 290070000 124770000 118050000 109480000 138140000 139600000 130030000 38872000 27416000 33893000 306750000 316710000 313870000 1192600000 1209100000 1079400000 19503 133 18895 362222;362223;362224;362225;362226;362227;362228;362229;362230;362231;362232;362233;362234;362235;362236;362237;362238;362239;362240;362241;362242;362243;362244;362245;362246;362247;362248;362249;362250;362251;362252;362253;362254;362255;362256;362257;362258;362259;362260;362261;362262;362263;362264;362265;362266;362267;362268;362269;362270 220899;220900;220901;220902;220903;220904;220905;220906;220907;220908;220909;220910;220911;220912;220913;220914;220915;220916;220917;220918;220919;220920;220921;220922;220923;220924;220925;220926;220927;220928;220929;220930;220931;220932;220933;220934;220935;220936;220937;220938;220939;220940;220941 220912 43 TDITIPQSQR Unmodified 1157.6041 0.60405094 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 2 1 20.072 20.461 2 4.9536E-05 8248 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 136.21 100.85 499870000 32478000 30092000 24912000 0 0 337140 52372000 49284000 56416000 0 0 0 39938000 31701000 32408000 0 0 0 49730000 52447000 47751000 0 0 0 19504 1421 18896 362271;362272;362273;362274;362275;362276;362277;362278;362279;362280;362281;362282;362283;362284;362285 220942;220943;220944;220945;220946;220947;220948;220949;220950;220951;220952;220953 220942 12 TDIVDLIDAR Unmodified 1129.5979 0.59790293 675 P0ABS5 dnaG DNA primase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 46.234 44.786 2 0.00032019 20880 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.76 96.09 79356000 7289200 7909400 7444700 0 0 0 8662000 0 1838000 0 0 0 5856900 5911500 5491200 0 0 0 10594000 8730600 9628700 0 0 0 19505 675 18897 362286;362287;362288;362289;362290;362291;362292;362293;362294;362295;362296 220954;220955;220956;220957;220958;220959;220960 220960 7 TDIVEYVR Unmodified 993.51311 0.51311067 1893 P77293 yfdH Bactoprenol glucosyl transferase homolog from prophage CPS-53 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.831 26.543 2 0.0027006 9922 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 98.299 87.426 143400000 0 5044400 3596400 1927600 2138500 1849400 11997000 11767000 12393000 3948400 3631700 5741800 8032900 7006200 7938100 0 1012400 0 16147000 19206000 16774000 0 0 3251400 19506 1893 18898 362297;362298;362299;362300;362301;362302;362303;362304;362305;362306;362307;362308;362309;362310;362311;362312;362313;362314;362315 220961;220962;220963;220964;220965 220962 5 TDKDSLFWGEQTIER Unmodified 1823.869 0.86899241 622 P0AB14 yccJ Uncharacterized protein YccJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 35.703 34.143 2;3 3.0853E-35 16418 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 294.81 291.13 4932700000 600490000 612310000 605020000 492120 0 591930 748370000 807020000 726310000 0 0 0 153570000 142160000 149590000 0 0 0 122960000 133390000 130400000 0 0 0 19507 622 18899 362316;362317;362318;362319;362320;362321;362322;362323;362324;362325;362326;362327;362328;362329;362330;362331;362332;362333;362334;362335;362336;362337;362338;362339;362340;362341 220966;220967;220968;220969;220970;220971;220972;220973;220974;220975;220976;220977;220978;220979;220980 220972 15 TDKETPYVPIPEGGVK Unmodified 1728.8934 0.89341625 1535 P39396 yjiY Inner membrane protein YjiY yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 1 1 1 2 2 2 1 1 1 27.488 26.367 2;3 3.6987E-06 11974 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 127.79 124.3 367200000 0 0 0 0 0 0 32013000 24954000 30400000 0 0 0 4448500 3667700 27776000 2910900 2252100 2146200 66283000 68499000 58562000 12054000 14919000 16314000 19508 1535 18900 362342;362343;362344;362345;362346;362347;362348;362349;362350;362351;362352;362353;362354;362355;362356;362357;362358;362359;362360;362361;362362;362363 220981;220982;220983;220984;220985;220986 220986 6 TDKFIVR Unmodified 877.50215 0.50215205 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 14.371 14.802 2 0.0047282 3924 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 110.9 73.294 115760000 16878000 17913000 16572000 0 0 0 6023500 0 0 6653300 6676000 7439800 0 890330 0 0 0 2960800 0 1058200 0 8614300 12775000 11305000 19509 1620 18901 362364;362365;362366;362367;362368;362369;362370;362371;362372;362373;362374;362375;362376 220987;220988;220989;220990;220991 220987 5 TDKLTSLR Unmodified 932.5291 0.52909508 402 P0A870 talB Transaldolase B yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.338 13.247 2 8.3519E-05 3858 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 171.38 136.18 714180000 0 0 0 1495700 0 1526200 90999000 91064000 82960000 0 0 0 57341000 68752000 60417000 0 0 0 97006000 78224000 84396000 0 0 0 19510 402 18902 362377;362378;362379;362380;362381;362382;362383;362384;362385;362386;362387 220992;220993;220994;220995;220996;220997 220995 4 TDKMQSLALAPVGNLDSYIR Unmodified 2191.1307 0.13070318 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 44.661 44.783 3 4.298E-18 15980 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 159.01 150.92 160510000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52825000 50366000 57319000 0 0 0 0 0 0 19511 1004 18903 362388;362389;362390 220998;220999 220999 2 TDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYR Unmodified 4063.9493 0.949315 238 P0A6F1 carA Carbamoyl-phosphate synthase small chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 3 3 2 3 3 3 54.08 52.696 4;5;6 4.0483E-37 25928 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.69 175.69 2791400000 697930000 687760000 595980000 0 0 0 0 0 0 0 0 0 53133000 50933000 43005000 0 0 0 244140000 209520000 209040000 0 0 0 19512 238 18904 362391;362392;362393;362394;362395;362396;362397;362398;362399;362400;362401;362402;362403;362404;362405;362406;362407;362408;362409;362410;362411;362412;362413;362414;362415;362416 221000;221001;221002;221003;221004;221005;221006;221007;221008;221009;221010;221011;221012;221013 221010 14 TDKPQPVNALLK Unmodified 1322.7558 0.75580056 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 2 1 2 2 1 1 2 2 1 2 2 2 1 2 2 2 1 2 1 1 2 2 1 20.617 20.784 2;3 0.0017066 6174 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 81.338 72.475 223220000 5738200 9602100 4076000 1977600 1480800 862270 7729300 9627300 16037000 13615000 16629000 17623000 15877000 7353700 12010000 10793000 7513400 7529100 17870000 7069100 7355000 11210000 9641300 3999100 19513 73 18905 362417;362418;362419;362420;362421;362422;362423;362424;362425;362426;362427;362428;362429;362430;362431;362432;362433;362434;362435;362436;362437;362438;362439;362440;362441;362442;362443;362444;362445;362446;362447;362448;362449;362450;362451;362452;362453;362454 221014;221015;221016;221017;221018;221019;221020 221015 7 TDKPWPVALYLTPVSSAGGVAIK Unmodified 2369.2995 0.29948307 176 P08191 fimH Protein FimH yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 51.281 49.78 3 0.003051 19955 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 55.228 54.222 28471000 0 0 6551500 0 0 0 0 0 0 5187700 10650000 6081400 0 0 0 0 0 0 0 0 0 0 0 0 19514 176 18906 362455;362456;362457;362458 221021;221022;221023 221022 3 TDKVYYHHTGHIGGIK Unmodified 1824.9271 0.92711641 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 3 2 2 11.812 12.286 2;3;4 8.6746E-05 2704 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 77.42 73.249 171980000 0 0 0 12761000 13368000 14128000 0 0 0 10703000 8520100 12177000 0 0 0 11922000 10845000 10986000 0 3600000 7624100 21397000 17525000 16423000 19515 569 18907 362459;362460;362461;362462;362463;362464;362465;362466;362467;362468;362469;362470;362471;362472;362473;362474;362475;362476;362477;362478;362479;362480;362481;362482 221024;221025;221026;221027;221028;221029;221030;221031;221032;221033;221034;221035;221036;221037;221038 221025 15 TDLALDEWDKEITPSTELR Unmodified 2231.0958 0.095757464 1840 P76243 yeaO Uncharacterized protein YeaO yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.106 43.691 3 1.4328E-17 21388 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 161.35 155.23 190060000 24934000 21865000 23550000 0 0 0 26037000 23269000 20648000 0 0 0 8574900 8308200 7744800 0 0 0 8249700 10821000 6054100 0 0 0 19516 1840 18908 362483;362484;362485;362486;362487;362488;362489;362490;362491;362492;362493;362494 221039;221040;221041;221042;221043;221044;221045 221042 7 TDLDKLVIEMETNGTIDPEEAIR Oxidation (M) 2617.2793 0.27927749 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 2 2 2 45.488 44.355 3 1.081E-30 16101 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 202.95 199.43 343390000 0 0 0 0 0 0 0 0 0 0 12867000 27843000 0 0 0 64527000 66108000 70766000 0 0 0 34112000 35118000 32052000 19517 383 18909 362495;362496;362497;362498;362499;362500;362501;362502;362503;362504;362505;362506;362507;362508;362509;362510 221046;221047;221048;221049;221050;221051;221052;221053;221054;221055;221056;221057 221050 167 12 TDLDKLVIEMETNGTIDPEEAIR Unmodified 2601.2844 0.28436287 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 4 4 4 1 1 1 5 6 6 1 2 1 3 4 5 53.644 52.658 2;3;4 3.7316E-76 21031 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 396.67 391.34 26662000000 15309000 0 17641000 9596100 5647500 10110000 0 4459700 0 1187500000 994720000 1228500000 16063000 14223000 12672000 5317300000 6840200000 6564200000 19698000 18393000 20601000 1439900000 1605800000 1319400000 19518 383 18909 362511;362512;362513;362514;362515;362516;362517;362518;362519;362520;362521;362522;362523;362524;362525;362526;362527;362528;362529;362530;362531;362532;362533;362534;362535;362536;362537;362538;362539;362540;362541;362542;362543;362544;362545;362546;362547;362548;362549;362550;362551;362552;362553;362554;362555;362556;362557;362558;362559;362560;362561;362562;362563;362564 221058;221059;221060;221061;221062;221063;221064;221065;221066;221067;221068;221069;221070;221071;221072;221073;221074;221075;221076;221077;221078;221079;221080;221081;221082;221083;221084;221085;221086;221087;221088;221089;221090;221091;221092;221093;221094;221095;221096 221062 37 TDLDKLVIEMETNGTIDPEEAIRR Oxidation (M) 2773.3804 0.38038852 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 1 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 9 7 9 4 3 2 45.226 44.776 3;4 2.2099E-22 19031 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 174.63 167.6 629870000 0 0 0 0 0 0 0 0 0 0 8032700 0 0 0 0 197010000 159050000 200130000 0 0 0 30727000 24058000 10861000 19519 383 18910 362565;362566;362567;362568;362569;362570;362571;362572;362573;362574;362575;362576;362577;362578;362579;362580;362581;362582;362583;362584;362585;362586;362587;362588;362589;362590;362591;362592;362593;362594;362595;362596;362597;362598;362599 221097;221098;221099;221100;221101;221102;221103;221104;221105;221106;221107;221108;221109;221110;221111;221112;221113;221114;221115;221116;221117;221118;221119;221120;221121;221122;221123;221124;221125 221106 167 24 TDLDKLVIEMETNGTIDPEEAIRR Unmodified 2757.3855 0.3854739 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 6 10 6 1 1 11 13 17 1 7 5 9 51.158 50.354 2;3;4;5 7.426E-84 19675 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 367.73 340.39 55334000000 11188000 9137000 8762600 32706000 27833000 26992000 0 0 0 3042900000 2859700000 3000000000 5162700 4132500 0 8419700000 13232000000 12757000000 0 3118200 0 4424600000 3704500000 3764700000 19520 383 18910 362600;362601;362602;362603;362604;362605;362606;362607;362608;362609;362610;362611;362612;362613;362614;362615;362616;362617;362618;362619;362620;362621;362622;362623;362624;362625;362626;362627;362628;362629;362630;362631;362632;362633;362634;362635;362636;362637;362638;362639;362640;362641;362642;362643;362644;362645;362646;362647;362648;362649;362650;362651;362652;362653;362654;362655;362656;362657;362658;362659;362660;362661;362662;362663;362664;362665;362666;362667;362668;362669;362670;362671;362672;362673;362674;362675;362676;362677;362678;362679;362680;362681;362682;362683;362684;362685;362686;362687;362688;362689;362690;362691;362692;362693;362694;362695 221126;221127;221128;221129;221130;221131;221132;221133;221134;221135;221136;221137;221138;221139;221140;221141;221142;221143;221144;221145;221146;221147;221148;221149;221150;221151;221152;221153;221154;221155;221156;221157;221158;221159;221160;221161;221162;221163;221164;221165;221166;221167;221168;221169;221170;221171;221172;221173;221174;221175;221176;221177;221178;221179;221180;221181;221182;221183;221184;221185;221186;221187;221188;221189;221190;221191;221192;221193;221194;221195;221196;221197;221198;221199;221200;221201;221202;221203;221204;221205;221206;221207;221208;221209;221210;221211;221212;221213;221214;221215;221216;221217;221218;221219;221220;221221;221222;221223;221224;221225 221194 95 TDLEYVLPDGSK Unmodified 1335.6558 0.65581174 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 35.488 33.967 2 0.00091854 16245 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.667 93.667 433370000 65936000 60424000 50518000 0 0 0 38701000 0 36785000 0 0 0 28451000 27916000 29076000 0 0 0 35796000 34612000 25155000 0 0 0 19521 1244 18911 362696;362697;362698;362699;362700;362701;362702;362703;362704;362705;362706 221226;221227;221228;221229;221230;221231;221232 221229 0 TDLFSSPDHTLDALGLR Unmodified 1856.9268 0.92684164 409 P0A890 tusA Sulfurtransferase TusA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.433 47.111 3 9.1849E-09 22040 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 98.507 97.475 282210000 26514000 31670000 22349000 0 0 0 0 25215000 25149000 0 0 0 20381000 18989000 22468000 0 0 0 24107000 35175000 29182000 0 1015300 0 19522 409 18912 362707;362708;362709;362710;362711;362712;362713;362714;362715;362716;362717;362718 221233;221234;221235;221236;221237 221236 3 TDLHGTAVR Unmodified 968.50394 0.50394296 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.289 11.913 2 5.6426E-05 2979 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.36 88.157 1796300000 208560000 212200000 182130000 0 0 0 185800000 158810000 177930000 0 0 0 111690000 108820000 95682000 4956000 7312000 0 111650000 95017000 114050000 8962000 4607700 8110600 19523 1545 18913 362719;362720;362721;362722;362723;362724;362725;362726;362727;362728;362729;362730;362731;362732;362733;362734;362735 221238;221239;221240;221241;221242;221243;221244;221245;221246;221247;221248;221249 221246 4 TDLIQRPR Unmodified 997.56688 0.56687757 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.309 14.054 2 0.0012921 4263 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.83 69.393 762260000 89698000 70303000 67968000 0 0 0 72462000 65051000 50543000 591330 873510 0 61792000 55136000 51379000 0 0 0 61833000 55092000 59541000 0 0 0 19524 715 18914 362736;362737;362738;362739;362740;362741;362742;362743;362744;362745;362746;362747;362748;362749 221250;221251;221252;221253;221254 221250 3 TDLISVAVEPTDSPVIAQALAGEEIKPGPHK Unmodified 3181.6871 0.68705887 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 3 3 1 3 3 3 3 3 3 49.455 48.087 3;4;5 1.565E-33 23394 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 200.52 192.02 16459000000 1702500000 1455700000 1532400000 2766200 4406100 4080200 1552700000 1508100000 1361800000 0 2980300 0 1138500000 1105200000 1022700000 0 0 0 1403800000 1414900000 1246900000 0 0 0 19525 666 18915 362750;362751;362752;362753;362754;362755;362756;362757;362758;362759;362760;362761;362762;362763;362764;362765;362766;362767;362768;362769;362770;362771;362772;362773;362774;362775;362776;362777;362778;362779;362780;362781;362782;362783;362784;362785;362786;362787;362788;362789 221255;221256;221257;221258;221259;221260;221261;221262;221263;221264;221265;221266;221267;221268;221269;221270;221271;221272;221273;221274;221275;221276;221277;221278;221279;221280;221281;221282;221283;221284;221285;221286;221287;221288;221289;221290;221291;221292 221265 38 TDLNPPVDFPADAK Unmodified 1498.7304 0.73037367 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.431 34.875 2 0.0038172 16724 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 81.525 75.801 69646000 5838800 5481300 5688300 0 0 0 6342500 5452800 4885100 0 0 0 5152600 4436900 3964500 0 0 0 6997300 7300800 8105200 0 0 0 19526 303 18916 362790;362791;362792;362793;362794;362795;362796;362797;362798;362799;362800;362801 221293;221294;221295 221295 0 TDLNYLQGVDGPIGR Unmodified 1616.8158 0.81583463 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.798 39.132 2 1.392E-20 18325 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 220.5 213.81 330480000 24798000 28175000 22042000 0 0 0 28062000 27881000 23402000 0 0 0 22577000 18554000 26036000 0 0 0 37363000 37985000 33608000 0 0 0 19527 891 18917 362802;362803;362804;362805;362806;362807;362808;362809;362810;362811;362812;362813 221296;221297;221298;221299;221300;221301 221300 6 TDLSLLNELQQHCDFPMVNHAVHQAK Unmodified 3044.4597 0.45965867 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 1 2 2 40.999 39.311 4;5 4.1127E-07 19231 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.75 101.26 723680000 65787000 67938000 55127000 0 0 0 107190000 91890000 84960000 0 0 550660 46040000 46587000 38789000 0 0 0 19881000 49758000 49182000 0 0 0 19528 709 18918 362814;362815;362816;362817;362818;362819;362820;362821;362822;362823;362824;362825;362826;362827;362828;362829;362830;362831;362832;362833;362834;362835;362836;362837 221302;221303;221304;221305;221306;221307;221308;221309;221310;221311;221312;221313;221314;221315 221307 14 TDLTAQEPAWQTR Unmodified 1515.7318 0.73177065 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.287 27.026 2 5.0801E-40 12430 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 275.84 257.06 960630000 32314000 31566000 27137000 6946200 6229600 7671300 57333000 59916000 60653000 29143000 33386000 27779000 63077000 64794000 64248000 8847000 4165000 4106100 108710000 105300000 96456000 23110000 21601000 16145000 19529 1426 18919 362838;362839;362840;362841;362842;362843;362844;362845;362846;362847;362848;362849;362850;362851;362852;362853;362854;362855;362856;362857;362858;362859;362860;362861 221316;221317;221318;221319;221320;221321;221322;221323;221324;221325;221326;221327;221328;221329;221330;221331;221332;221333;221334;221335;221336;221337 221328 16 TDLTAQEPAWQTR Acetyl (Protein N-term) 1557.7423 0.74233534 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 1 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 41.506 39.521 2 7.4181E-09 15602 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 158.79 142.16 51190000 0 0 0 0 0 0 6001100 5666000 4297700 2613700 0 5160500 0 5052100 4750300 0 0 0 7490100 10159000 0 0 0 0 19530 1426 18919 362862;362863;362864;362865;362866;362867;362868;362869;362870 221338;221339;221340;221341;221342 221338 3 TDMNILDLFLK Unmodified 1321.6952 0.69517413 683 P0ABU9 tolQ Protein TolQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 2 1 2 2 1 1 32.529 31.211 3 0.17108 14174 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 8.513 4.9808 934900000 32282000 36363000 34608000 0 0 0 70786000 70436000 69843000 0 0 0 124120000 58965000 113960000 0 0 0 166140000 75496000 81893000 0 0 0 19531 683 18920 362871;362872;362873;362874;362875;362876;362877;362878;362879;362880;362881;362882;362883;362884;362885 221343;221344;221345 221344 3 TDMQAALIR Oxidation (M) 1033.5226 0.5226295 1986 yes yes 0 1 0 By matching By MS/MS 1 1 27.436 26.182 2 0.032744 9537 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 57.559 19.832 5171300 0 0 2252300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2919000 0 0 + 19532 1986 18921 362886;362887 221346 221346 615 0 TDNNTALK Unmodified 875.43486 0.43486035 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.272 11.099 2 0.0033112 2417 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 93.195 63.354 487010000 0 0 0 0 0 361780 31333000 39219000 30439000 0 0 0 60661000 51770000 52796000 0 0 0 68393000 82661000 67112000 0 0 2266300 19533 503 18922 362888;362889;362890;362891;362892;362893;362894;362895;362896;362897;362898 221347;221348;221349;221350 221350 3 TDPGPAFDWAR Unmodified 1231.5622 0.56218613 1084 P13016 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.356 35.662 2 0.007807 17325 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.893 54.686 85166000 0 8216500 6576900 0 0 0 12930000 10976000 10391000 0 0 0 4019600 5713800 5842800 0 0 0 8614300 6208100 5677600 0 0 0 19534 1084 18923 362899;362900;362901;362902;362903;362904;362905;362906;362907;362908;362909;362910 221351;221352 221351 2 TDQALAK Unmodified 745.39702 0.39701828 778 P0ADA5 yajG Uncharacterized lipoprotein YajG yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 9.1062 9.8784 2 0.15034 2279 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 44.692 17.572 46656000 0 0 0 693370 48365 50416 19104000 12486000 12999000 0 0 0 0 0 0 0 0 0 0 0 0 613570 0 661450 19535 778 18924 362911;362912;362913;362914;362915;362916;362917;362918 221353 221353 1 TDQSHQCVIIGIAGASASGK Unmodified 1998.9793 0.97928792 425 P0A8F4 udk Uridine kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.555 26.193 3 0.0023593 11420 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 56.766 52.524 326370000 18746000 16768000 11185000 0 0 0 28909000 22583000 26144000 23623000 25932000 22122000 18740000 15943000 14188000 0 0 0 22068000 23877000 22156000 7616400 5768100 0 19536 425 18925 362919;362920;362921;362922;362923;362924;362925;362926;362927;362928;362929;362930;362931;362932;362933;362934;362935 221354;221355;221356;221357;221358;221359 221358 2 TDSTNLSQDAVNMVR Unmodified 1649.7679 0.76789816 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 32.789 31.371 2;3 1.2809E-45 14333 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 281.83 275.3 871250000 56735000 52693000 48010000 926390 963100 1059700 58621000 62164000 60136000 3552000 4794500 5788300 75070000 72659000 71951000 11881000 5000200 7028200 84863000 85822000 77959000 9072800 7272100 7229000 19537 124 18926 362936;362937;362938;362939;362940;362941;362942;362943;362944;362945;362946;362947;362948;362949;362950;362951;362952;362953;362954;362955;362956;362957;362958;362959;362960;362961;362962;362963;362964;362965;362966;362967;362968;362969;362970;362971 221360;221361;221362;221363;221364;221365;221366;221367;221368;221369;221370;221371;221372;221373;221374;221375;221376;221377;221378;221379;221380;221381;221382 221380 21 TDSTVKQPIVDEGSNAAFDIVYSDAQGVKK Unmodified 3181.5779 0.57790235 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 2 By matching By MS/MS By matching 1 1 1 40.443 38.242 4 0.01034 15222 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 42.659 40.243 6772400 0 0 0 0 1054100 0 0 0 0 0 3498700 2219600 0 0 0 0 0 0 0 0 0 0 0 0 19538 1877 18927 362972;362973;362974 221383 221383 1 TDSVANR Unmodified 761.36678 0.36678078 984 P0AG44 rplQ 50S ribosomal protein L17 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 5.4827 6.3571 2 8.2743E-05 1136 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.75 107.9 2166100000 365500000 385740000 302190000 0 0 833660 0 79154000 97931000 0 0 0 120110000 118260000 109050000 0 0 0 191440000 203470000 192390000 0 0 0 19539 984 18928 362975;362976;362977;362978;362979;362980;362981;362982;362983;362984;362985;362986;362987 221384;221385;221386;221387;221388;221389;221390;221391;221392 221384 9 TDSVANRR Unmodified 917.46789 0.46789181 984 P0AG44 rplQ 50S ribosomal protein L17 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7.1236 7.712 2 0.0004722 1799 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 142.64 118 525420000 0 0 0 21382000 15809000 20839000 17850000 23706000 18050000 40185000 29128000 30921000 13201000 15718000 12835000 47461000 22266000 19746000 25223000 23373000 22864000 37191000 35397000 32275000 19540 984 18929 362988;362989;362990;362991;362992;362993;362994;362995;362996;362997;362998;362999;363000;363001;363002;363003;363004;363005;363006;363007;363008 221393;221394;221395;221396;221397 221393 5 TDTATDKDYLDIER Unmodified 1654.7686 0.76860967 94 P04825 pepN Aminopeptidase N yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 24.763 23.71 2;3 2.6015E-68 10714 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 333.58 324.88 3373900000 376970000 370380000 315030000 1579000 1241900 1375800 327020000 326420000 266290000 1794100 1550100 0 205930000 192510000 159750000 0 0 0 289960000 267340000 268780000 0 0 0 19541 94 18930 363009;363010;363011;363012;363013;363014;363015;363016;363017;363018;363019;363020;363021;363022;363023;363024;363025;363026;363027;363028;363029;363030;363031;363032;363033;363034;363035;363036;363037 221398;221399;221400;221401;221402;221403;221404;221405;221406;221407;221408;221409;221410;221411;221412;221413;221414;221415;221416;221417;221418;221419;221420;221421 221401 24 TDTFLFHYNFPPYSVGETGMVGSPK Unmodified 2790.3 0.29995335 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 51.16 49.883 3 1.635E-15 24689 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 147.25 147 467830000 0 39177000 0 8336400 7474900 13559000 24212000 30449000 36212000 0 3481300 0 50109000 38290000 39570000 0 0 0 54064000 61386000 58209000 3302400 0 0 19542 107 18931 363038;363039;363040;363041;363042;363043;363044;363045;363046;363047;363048;363049;363050;363051;363052;363053;363054;363055;363056 221422;221423;221424;221425;221426;221427;221428;221429;221430;221431;221432;221433;221434;221435;221436;221437 221424 16 TDTLLEISVLPLDSYAKPDIEANYQGR Unmodified 3020.5342 0.53424663 1462 P37194 slp Outer membrane protein slp yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 53.976 52.671 3 7.172E-16 21158 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 142.21 139.62 107990000 0 0 0 3532700 0 0 20068000 0 24333000 21546000 15062000 21196000 0 0 0 2256100 0 0 0 0 0 0 0 0 19543 1462 18932 363057;363058;363059;363060;363061;363062;363063 221438;221439 221439 2 TDVAGEAEK Unmodified 918.42944 0.42944062 1242 P24203 yjiA Uncharacterized GTP-binding protein YjiA yes yes 0 0 0 By MS/MS By matching 1 1 10.428 11.256 2 0.11335 2787 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 46.39 27.851 26527000 0 0 0 0 0 0 0 0 25934000 0 0 0 0 0 0 0 0 0 0 0 593420 0 0 0 19544 1242 18933 363064;363065 221440 221440 0 TDVLDLTINTR Unmodified 1259.6721 0.67213051 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.671 39.003 2 3.1579E-07 15178 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 157.66 144.29 402920000 13100000 12747000 11782000 7343500 7570300 7441300 0 2617500 28969000 10238000 14463000 15598000 29713000 25189000 27694000 5155800 6748700 0 49073000 46530000 40994000 14041000 12909000 13003000 19545 1267 18934 363066;363067;363068;363069;363070;363071;363072;363073;363074;363075;363076;363077;363078;363079;363080;363081;363082;363083;363084;363085;363086;363087 221441;221442;221443;221444;221445;221446;221447;221448;221449;221450;221451;221452;221453;221454;221455;221456;221457;221458 221445 14 TDVLIDEVR Unmodified 1058.5608 0.56078914 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.871 28.483 2 1.1605E-05 13333 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.57 150.36 6205100000 890700000 851960000 813390000 6837400 7636300 6934900 300870000 300530000 292730000 0 0 0 300190000 287980000 299480000 0 0 0 615690000 620360000 609780000 0 0 0 19546 1444 18935 363088;363089;363090;363091;363092;363093;363094;363095;363096;363097;363098;363099;363100;363101;363102;363103;363104 221459;221460;221461;221462;221463;221464;221465;221466;221467;221468;221469;221470;221471;221472;221473;221474;221475 221470 16 TDYVSLPNLLAGR Unmodified 1417.7565 0.75652884 1058 P10441 lpxB Lipid-A-disaccharide synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 50.054 48.615 2 1.4393E-05 19741 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 112.36 103.02 41416000 0 0 0 2261500 1977300 2221400 0 0 0 8508600 8151900 6337900 0 0 0 0 0 0 0 0 0 3832400 4051900 4072600 19547 1058 18936 363105;363106;363107;363108;363109;363110;363111;363112;363113 221476;221477;221478 221476 3 TEAESWYQTK Unmodified 1241.5564 0.55643205 14 CON__P13647 no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 20.621 20.597 2 0.00040052 6782 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 105.52 102.15 25897000 0 0 0 603490 623360 644240 0 1198700 0 4218400 3122800 4595600 0 0 0 0 0 819650 0 0 0 3350800 2858200 3861800 + 19548 14 18937 363114;363115;363116;363117;363118;363119;363120;363121;363122;363123;363124 221479;221480;221481;221482;221483;221484 221479 6 TEAIDPTTVK Unmodified 1073.5605 0.56045479 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.716 18.398 2 0.00012699 6665 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128 115.47 381000000 27413000 33426000 23546000 0 0 0 40065000 37563000 41932000 0 0 0 25379000 23179000 22635000 0 0 0 40000000 33816000 32043000 0 0 0 19549 1774 18938 363125;363126;363127;363128;363129;363130;363131;363132;363133;363134;363135;363136 221485;221486;221487;221488;221489;221490;221491;221492;221493;221494;221495;221496;221497 221493 13 TEALAGTVANNPDDK Unmodified 1514.7213 0.72126554 1504 P38051 menF Isochorismate synthase MenF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.523 18.205 2 1.0759E-11 6791 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.13 167.6 79462000 6471100 7255600 5988300 0 0 0 7207400 7451100 7776800 0 0 0 4181400 5903400 6050500 0 0 0 7288600 7364900 6522700 0 0 0 19550 1504 18939 363137;363138;363139;363140;363141;363142;363143;363144;363145;363146;363147;363148 221498;221499;221500;221501;221502;221503;221504;221505 221499 8 TEALEPFHPDR Unmodified 1310.6255 0.62551466 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 21.451 21.539 2;3 1.6667E-05 7134 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 139.96 128.81 778010000 50769000 49905000 44754000 10545000 10254000 10026000 49148000 40285000 39220000 46951000 24723000 39301000 32502000 32015000 28308000 0 0 0 74728000 63837000 52413000 27838000 25256000 25230000 19551 1009 18940 363149;363150;363151;363152;363153;363154;363155;363156;363157;363158;363159;363160;363161;363162;363163;363164;363165;363166;363167;363168;363169;363170;363171;363172;363173;363174;363175;363176;363177;363178;363179;363180;363181;363182;363183;363184;363185;363186;363187;363188;363189;363190 221506;221507;221508;221509;221510;221511;221512;221513;221514;221515;221516;221517;221518;221519;221520;221521;221522;221523;221524;221525;221526;221527;221528;221529;221530 221507 23 TEANIIR Unmodified 815.45012 0.45011648 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 13.607 14.459 2 0.033321 4648 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.359 65.674 1789200000 240260000 188620000 204960000 0 0 0 169720000 181390000 170400000 0 0 0 127430000 118650000 0 0 0 0 181370000 206400000 0 0 0 0 19552 58 18941 363191;363192;363193;363194;363195;363196;363197;363198;363199;363200 221531;221532 221531 0 TECAVDAIR Unmodified 1033.4862 0.48624399 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.737 17.494 2 7.3326E-05 5918 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 143.01 133.02 5701300000 367410000 359080000 349030000 0 0 0 751070000 775350000 683610000 0 0 0 336890000 364220000 356640000 0 0 0 477830000 463800000 416330000 0 0 0 19553 490 18942 363201;363202;363203;363204;363205;363206;363207;363208;363209;363210;363211;363212 221533;221534;221535;221536;221537;221538;221539;221540;221541;221542;221543;221544 221542 12 TEDAPYVHNVR Unmodified 1299.6208 0.62076364 1655 P63183 kup Low affinity potassium transport system protein kup yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 13.563 14.28 3 0.13529 4429 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 32.008 21.256 43087000 0 0 0 0 0 712630 0 5218100 5369900 0 1812500 1369300 0 0 4818900 0 0 0 6694900 6701200 10390000 0 0 0 19554 1655 18943 363213;363214;363215;363216;363217;363218;363219;363220;363221 221545 221545 0 TEDEMGLR Unmodified 949.4175 0.41749572 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.013 16.565 2 1.6927E-06 5407 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 191.03 173 632900000 47282000 55309000 43740000 4536300 4790700 5101100 39482000 38454000 41677000 8146500 7396200 5582900 44074000 39076000 38612000 3356900 3659000 4893700 60401000 66002000 58380000 4316300 4492800 4140600 19555 862 18944 363222;363223;363224;363225;363226;363227;363228;363229;363230;363231;363232;363233;363234;363235;363236;363237;363238;363239;363240;363241;363242;363243;363244;363245 221546;221547;221548;221549;221550;221551;221552;221553;221554;221555;221556;221557;221558;221559;221560;221561 221560 15 TEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDK Unmodified 4242.0604 0.060441175 532 P0A9K9 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 2 2 1 2 2 1 1 2 2 2 1 53.955 52.561 4;5 1.2904E-31 25716 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 178.5 171.63 3230700000 202780000 245340000 64670000 0 0 0 281840000 315780000 269230000 0 7673100 0 319790000 318460000 88653000 4134200 0 0 378430000 333590000 395920000 0 4458300 0 19556 532 18945 363246;363247;363248;363249;363250;363251;363252;363253;363254;363255;363256;363257;363258;363259;363260;363261;363262;363263;363264;363265;363266;363267;363268;363269;363270 221562;221563;221564;221565;221566;221567;221568;221569;221570;221571 221564 10 TEEEIVER Unmodified 1003.4822 0.48220447 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 13.587 14.461 2 0.0079861 4273 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.302 79.767 133900000 15517000 0 0 0 0 0 12094000 13700000 13315000 0 0 0 11893000 14091000 9267400 0 0 0 13471000 15451000 15094000 0 0 0 19557 1880 18946 363271;363272;363273;363274;363275;363276;363277;363278;363279;363280 221572 221572 0 TEEEQFAR Unmodified 1008.4512 0.45123869 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.825 13.611 2 1.1284E-06 4065 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 195.06 193.97 1510000000 0 0 117030000 0 0 0 134720000 174040000 146630000 788020 0 0 136820000 121990000 129710000 0 0 0 188160000 188480000 171640000 0 0 0 19558 59 18947 363281;363282;363283;363284;363285;363286;363287;363288;363289;363290;363291 221573;221574;221575;221576;221577;221578;221579;221580;221581;221582 221576 10 TEEFDAIK Unmodified 951.45493 0.45492709 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 20.3 20.375 2 0.0001799 5497 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 154.01 134.45 33962000000 227280000 240480000 216970000 18466000 17178000 21380000 209510000 213290000 211300000 2728200000 2422100000 2190500000 195060000 178430000 194270000 5592400000 4493000000 4648800000 295630000 278260000 278020000 3279900000 3083700000 2727600000 19559 458 18948 363292;363293;363294;363295;363296;363297;363298;363299;363300;363301;363302;363303;363304;363305;363306;363307;363308;363309;363310;363311;363312;363313;363314;363315;363316;363317;363318;363319;363320;363321;363322;363323;363324;363325 221583;221584;221585;221586;221587;221588;221589;221590;221591;221592;221593;221594;221595;221596;221597;221598;221599;221600;221601;221602;221603;221604;221605;221606;221607;221608;221609;221610;221611;221612;221613;221614;221615;221616;221617;221618;221619;221620;221621;221622;221623;221624 221583 37 TEEIAGFQTSPK Unmodified 1306.6405 0.64049603 602 P0AAN1 hybE Hydrogenase-2 operon protein HybE yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 24.234 23.293 2 0.082882 8538 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 50.284 46.391 22925000 0 0 0 0 0 0 0 0 0 4120500 0 0 3711300 3182300 3786300 0 0 0 0 4202600 3921900 0 0 0 19560 602 18949 363326;363327;363328;363329;363330;363331 221625 221625 0 TEELLTLPANEVLWR Unmodified 1782.9516 0.95159983 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 53.067 51.638 2;3 4.6134E-20 25255 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 251.34 233.6 1215100000 93526000 75581000 66213000 1258600 731130 946820 102290000 110630000 95223000 0 0 1589100 100590000 90402000 93606000 0 0 0 120020000 134350000 128120000 0 0 0 19561 292 18950 363332;363333;363334;363335;363336;363337;363338;363339;363340;363341;363342;363343;363344;363345;363346;363347;363348;363349;363350;363351;363352;363353;363354;363355;363356;363357;363358;363359 221626;221627;221628;221629;221630;221631;221632;221633;221634;221635;221636;221637;221638;221639 221629 14 TEELNKEVASNSELVQSSR Unmodified 2119.0393 0.039305217 12 CON__P08779 yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 22.588 21.842 3 6.7499E-10 7319 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 118.72 115.38 14759000 0 0 0 0 0 0 0 0 0 5175800 4869600 4713100 0 0 0 0 0 0 0 0 0 0 0 0 + 19562 12 18951 363360;363361;363362 221640;221641 221641 2 TEEPHDAVAR Unmodified 1123.5258 0.52580062 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.512 11.342 3 0.096199 2670 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 32.329 25.311 123960000 1391800 7387400 7014300 2327700 0 0 19871000 11077000 12431000 0 0 0 9016900 8601500 9685800 0 0 0 14470000 10875000 9811600 0 0 0 19563 1260 18952 363363;363364;363365;363366;363367;363368;363369;363370;363371;363372;363373;363374;363375 221642;221643;221644 221642 2 TEEQLANIAR Unmodified 1143.5884 0.58840088 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 1 1 1 2 1 1 2 2 2 20.728 21.003 2;3 3.6285E-12 8356 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 205.7 156.25 8512100000 452400000 432050000 391360000 0 1815700 0 943920000 854840000 903920000 1574300 1432100 1731600 719360000 629360000 635670000 0 0 0 972380000 801600000 768650000 0 0 0 19564 1299 18953 363376;363377;363378;363379;363380;363381;363382;363383;363384;363385;363386;363387;363388;363389;363390;363391;363392;363393;363394;363395;363396;363397 221645;221646;221647;221648;221649;221650;221651;221652;221653;221654;221655;221656 221646 10 TEEVCAR Unmodified 863.38072 0.38071629 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.528 11.344 2 0.00026773 2618 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.69 155.15 3491100000 278320000 256510000 241900000 0 0 0 454210000 438310000 398490000 0 0 0 273830000 240560000 200700000 0 0 0 237820000 229280000 241200000 0 0 0 19565 399 18954 363398;363399;363400;363401;363402;363403;363404;363405;363406;363407;363408;363409 221657;221658;221659;221660;221661;221662;221663;221664;221665;221666;221667 221658 11 TEEVIAENPGK Unmodified 1185.5877 0.58773217 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.991 15.791 2 2.5842E-07 5250 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 161.79 150.19 2307900000 111970000 136230000 122670000 0 0 0 209340000 207370000 182790000 0 0 0 212100000 203880000 227910000 0 0 0 244100000 231270000 218310000 0 0 0 19566 24 18955 363410;363411;363412;363413;363414;363415;363416;363417;363418;363419;363420;363421 221668;221669;221670;221671;221672;221673;221674;221675 221670 8 TEEVIAENPGKK Unmodified 1313.6827 0.68269519 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 11.956 12.751 2;3 1.76E-17 3532 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 236.16 214.46 3100900000 175520000 186260000 171650000 0 0 0 297890000 287030000 269980000 0 0 0 318510000 297130000 280380000 0 1109100 0 141230000 343100000 331060000 0 0 0 19567 24 18956 363422;363423;363424;363425;363426;363427;363428;363429;363430;363431;363432;363433;363434;363435;363436;363437;363438;363439;363440;363441;363442;363443;363444;363445 221676;221677;221678;221679;221680;221681;221682;221683;221684;221685;221686;221687;221688;221689;221690;221691;221692;221693;221694 221680 19 TEEVRPLQPR Unmodified 1223.6622 0.66223452 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 13.122 13.778 2;3 1.3163E-06 4076 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.23 159.42 3040100000 160040000 135610000 159180000 0 1313200 2177600 143550000 162160000 151870000 9336200 2432100 2509400 334460000 239130000 260880000 5298700 848290 1678600 434330000 464930000 347410000 6732200 7365900 6846900 19568 1819 18957 363446;363447;363448;363449;363450;363451;363452;363453;363454;363455;363456;363457;363458;363459;363460;363461;363462;363463;363464;363465;363466;363467;363468;363469;363470;363471;363472;363473;363474;363475;363476;363477;363478;363479;363480;363481;363482;363483;363484;363485;363486 221695;221696;221697;221698;221699;221700;221701;221702;221703;221704;221705;221706;221707;221708;221709;221710;221711;221712;221713;221714;221715;221716;221717;221718;221719;221720;221721;221722;221723 221710 20 TEFDKDNGFTVLDACQVNDR Unmodified 2343.0437 0.043738668 1626 P60651 speB Agmatinase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 36.128 34.564 3 4.999E-06 16590 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.57 87.618 314000000 19110000 19702000 17831000 0 1395400 0 21481000 23749000 19497000 0 0 0 28116000 29029000 26343000 0 0 0 31126000 36239000 40383000 0 0 0 19569 1626 18958 363487;363488;363489;363490;363491;363492;363493;363494;363495;363496;363497;363498;363499 221724;221725;221726;221727;221728;221729 221728 5 TEFDVILK Unmodified 963.5277 0.5276981 351 P0A7K2 rplL 50S ribosomal protein L7/L12 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 37.105 35.376 1;2 0.00016239 17645 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.68 95.148 13122000000 1703100000 1621200000 1460300000 18373000 16632000 20258000 656190000 641370000 634930000 40150000 38988000 34346000 838130000 753420000 832000000 18089000 15529000 17914000 1268400000 1237600000 1165100000 33675000 27532000 28641000 19570 351 18959 363500;363501;363502;363503;363504;363505;363506;363507;363508;363509;363510;363511;363512;363513;363514;363515;363516;363517;363518;363519;363520;363521;363522;363523;363524;363525;363526;363527;363528;363529;363530;363531;363532;363533;363534;363535;363536;363537;363538;363539;363540;363541;363542;363543 221730;221731;221732;221733;221734;221735;221736;221737;221738;221739;221740;221741;221742;221743;221744;221745;221746;221747;221748;221749;221750;221751;221752;221753;221754;221755;221756;221757;221758;221759;221760;221761;221762;221763;221764;221765;221766 221734 29 TEFIDQLLQR Unmodified 1261.6667 0.6666512 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 46.012 44.555 2 0.00033618 21716 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.71 95.507 73991000 11311000 15290000 11917000 0 0 0 4354100 4612700 0 0 0 0 4780400 4258900 3604900 0 0 0 3951300 4901000 5009400 0 0 0 19571 1295 18960 363544;363545;363546;363547;363548;363549;363550;363551;363552;363553;363554 221767;221768;221769;221770;221771 221770 1 TEFLFMDR Unmodified 1057.4903 0.49026674 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.949 40.067 2 0.00048891 19837 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 136.16 131.8 5380500000 337040000 307150000 311470000 1186900 1259700 1301600 455420000 471010000 438800000 3514800 3548200 3342700 610070000 506530000 501010000 0 0 0 481680000 460520000 480100000 2166300 1613700 1759300 19572 192 18961 363555;363556;363557;363558;363559;363560;363561;363562;363563;363564;363565;363566;363567;363568;363569;363570;363571;363572;363573;363574;363575 221772;221773;221774;221775;221776;221777;221778;221779;221780;221781;221782;221783;221784;221785;221786;221787;221788;221789;221790 221778 19 TEFLFMDR Oxidation (M) 1073.4852 0.48518136 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 2 1 2 1 34.79 33.321 2 0.049484 16589 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.782 58.782 114820000 0 4664100 4894400 0 0 0 11883000 10853000 10679000 0 0 0 8562800 8309000 7848300 0 0 0 13799000 21527000 11799000 0 0 0 19573 192 18961 363576;363577;363578;363579;363580;363581;363582;363583;363584;363585;363586;363587;363588 221791;221792;221793;221794 221791 1 TEFLFMDRDALPTEEEQFAAYK Unmodified 2650.2261 0.22611971 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.896 48.604 3 5.1948E-07 19491 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 105.32 103.34 220580000 7904900 7869300 3862400 6698500 7529800 6622200 12200000 10397000 7678700 13950000 15574000 13290000 8791300 7822700 10440000 10996000 0 8056800 11382000 13228000 12104000 8418200 9642500 6121900 19574 192 18962 363589;363590;363591;363592;363593;363594;363595;363596;363597;363598;363599;363600;363601;363602;363603;363604;363605;363606;363607;363608;363609;363610;363611 221795;221796;221797;221798;221799;221800;221801;221802 221796 8 TEFYADLNR Unmodified 1127.5247 0.52473799 1846 P76270 msrC Free methionine-R-sulfoxide reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.45 26.167 2 8.3321E-06 12126 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 169.06 169.06 856830000 87647000 93298000 81657000 0 0 0 70279000 69580000 75469000 801930 0 914030 56152000 55263000 52292000 0 0 0 76483000 70407000 66591000 0 0 0 19575 1846 18963 363612;363613;363614;363615;363616;363617;363618;363619;363620;363621;363622;363623;363624;363625 221803;221804;221805;221806;221807;221808;221809;221810;221811;221812 221805 9 TEGATVFGYQVMDPER Unmodified 1798.8196 0.81959938 1641 P61887 rmlA2 Glucose-1-phosphate thymidylyltransferase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 42.415 40.698 2 2.7586E-10 19956 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 149.26 146.94 77168000 4396300 0 6323100 0 0 0 5571900 8661500 4596700 0 0 0 7867200 7007400 6999300 0 0 0 6316200 10789000 8638500 0 0 0 19576 1641 18964 363626;363627;363628;363629;363630;363631;363632;363633;363634;363635;363636 221813;221814 221813 2 TEGEWSFNAEETEVADSEENKNTDQHLATSR Unmodified 3523.5248 0.52475716 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 31.398 29.997 4 1.4529E-17 13652 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 136.14 136.14 156060000 8805700 0 0 0 0 0 13778000 9822300 8445700 0 0 0 15058000 16044000 15520000 0 0 0 27883000 20425000 20277000 0 0 0 19577 194 18965 363637;363638;363639;363640;363641;363642;363643;363644;363645;363646 221815;221816;221817 221817 3 TEGGAVWLDPK Unmodified 1171.5873 0.58733824 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.224 28.868 2 0.00025041 13762 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.04 93.1 1731500000 124530000 137830000 125180000 0 0 0 161590000 156480000 148790000 0 0 0 129000000 136650000 117280000 0 0 0 165950000 174070000 154100000 0 0 0 19578 1024 18966 363647;363648;363649;363650;363651;363652;363653;363654;363655;363656;363657;363658 221818;221819;221820;221821;221822;221823;221824;221825 221820 8 TEGSDNREENR Unmodified 1305.5545 0.55453457 1183 P21513 rne Ribonuclease E yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 4.2924 5.1696 2;3 0.049711 1291 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 68.735 63.769 4277000 0 0 0 0 0 0 1604800 0 0 0 0 0 0 0 0 0 0 0 2672200 0 0 0 0 0 19579 1183 18967 363659;363660;363661 221826;221827;221828 221828 3 TEHAQQQHK Unmodified 1105.5265 0.52646932 403 P0A873 trmD tRNA (guanine-N(1)-)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2.8823 3.7661 2;3 0.00045305 624 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.86 101.18 51833000 4232600 2736500 2618200 0 0 0 0 0 0 0 0 0 2887000 3474400 1744700 0 0 0 11620000 11373000 11146000 0 0 0 19580 403 18968 363662;363663;363664;363665;363666;363667;363668;363669;363670;363671;363672;363673;363674;363675;363676 221829;221830;221831;221832;221833;221834;221835;221836;221837 221836 9 TEHPGPLPETVVAHLDK Unmodified 1838.9527 0.95266246 340 P0A7F6 speD S-adenosylmethionine decarboxylase proenzyme;S-adenosylmethionine decarboxylase beta chain;S-adenosylmethionine decarboxylase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 3 3 3 26.831 25.726 2;3;4 1.887E-10 11585 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155.39 143.03 1830200000 355130000 346520000 339670000 0 0 0 53494000 44480000 55325000 0 0 0 86047000 89830000 91759000 0 0 0 132330000 128600000 107040000 0 0 0 19581 340 18969 363677;363678;363679;363680;363681;363682;363683;363684;363685;363686;363687;363688;363689;363690;363691;363692;363693;363694;363695;363696;363697;363698;363699;363700;363701;363702;363703;363704;363705;363706;363707;363708;363709 221838;221839;221840;221841;221842;221843;221844;221845;221846;221847;221848;221849;221850;221851;221852;221853;221854;221855;221856;221857;221858;221859;221860;221861;221862;221863 221854 26 TEIEDVLILEPR Unmodified 1425.7715 0.7715102 1490 P37745 rfbC dTDP-4-dehydrorhamnose 3,5-epimerase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.384 47.053 2;3 1.3358E-11 22779 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 182.64 176.6 462460000 33117000 33032000 24534000 0 0 0 49345000 49833000 44160000 0 0 0 27643000 28653000 26636000 0 0 0 53126000 49973000 42413000 0 0 0 19582 1490 18970 363710;363711;363712;363713;363714;363715;363716;363717;363718;363719;363720;363721;363722;363723;363724;363725;363726;363727;363728;363729;363730;363731;363732;363733 221864;221865;221866;221867;221868;221869;221870;221871;221872;221873;221874;221875;221876;221877;221878;221879 221871 12 TEIGTDVNYGEITR Unmodified 1566.7526 0.75256567 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 30.686 28.94 2 2.4038E-06 10727 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 124.42 114.77 323730000 0 0 0 0 0 0 0 39987000 0 0 19904000 19723000 0 0 0 0 0 0 67160000 68688000 60615000 24986000 0 22666000 19583 1435 18971 363734;363735;363736;363737;363738;363739;363740;363741 221880;221881 221880 1 TEIIAETGAGQHGVASALASALLGLK Unmodified 2477.349 0.34895246 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 3 3 2 1 1 1 1 1 1 2 1 1 1 1 53.459 52.052 2;3;4 3.9434E-51 25561 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 261.69 255.79 490930000 155710000 141510000 126590000 4419300 6299000 5268500 0 1522900 0 16091000 0 6525600 0 3332200 13048000 0 0 0 2367700 3226200 0 0 5031900 0 19584 405 18972 363742;363743;363744;363745;363746;363747;363748;363749;363750;363751;363752;363753;363754;363755;363756;363757;363758;363759;363760;363761 221882;221883;221884;221885;221886;221887 221884 6 TEIIEESEGEVAGIK Unmodified 1602.7988 0.79884716 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.785 31.37 2;3 2.2052E-12 14951 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 178.67 178.67 1144800000 104800000 85823000 86239000 0 0 0 85672000 78516000 80162000 0 0 0 100660000 105480000 96183000 0 0 0 111520000 103960000 105810000 0 0 0 19585 149 18973 363762;363763;363764;363765;363766;363767;363768;363769;363770;363771;363772;363773;363774;363775;363776;363777;363778;363779;363780;363781;363782;363783;363784;363785 221888;221889;221890;221891;221892;221893;221894;221895;221896;221897;221898;221899;221900 221895 12 TELDIEK Unmodified 846.43346 0.43346336 211 P09372 grpE Protein GrpE yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.169 17.649 2 0.0057321 6280 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.418 43.847 1506600000 138260000 133580000 104470000 1823700 0 0 200480000 213600000 213830000 13248000 0 0 0 0 0 0 1278800 0 178290000 165460000 131390000 4004600 3129500 3698200 19586 211 18974 363786;363787;363788;363789;363790;363791;363792;363793;363794;363795;363796;363797;363798;363799;363800 221901;221902;221903;221904;221905;221906;221907;221908 221905 6 TELEDLVR Unmodified 973.50803 0.50802529 208 P09163 yjaB Uncharacterized N-acetyltransferase YjaB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.272 29.916 2 0.0024432 14029 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 100.45 61.659 60480000 4385400 3638200 5148700 0 0 0 4984600 6097200 6183800 0 0 0 4203400 4572900 3234800 0 0 0 7016800 6953900 4060300 0 0 0 19587 208 18975 363801;363802;363803;363804;363805;363806;363807;363808;363809;363810;363811;363812 221909;221910 221909 2 TELEDLYLPYKPK Unmodified 1607.8447 0.84467514 1586 P46837 yhgF Protein YhgF yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.893 36.219 2 1.6732E-08 17519 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 161.17 150.08 151220000 11757000 10727000 12638000 0 0 0 13246000 14307000 12337000 0 0 0 10447000 8414600 9063200 0 0 0 14936000 16019000 17324000 0 0 0 19588 1586 18976 363813;363814;363815;363816;363817;363818;363819;363820;363821;363822;363823;363824 221911;221912;221913;221914;221915;221916;221917;221918;221919 221916 7 TELEGIFNDSTLLADLDSALPEGSVR Unmodified 2761.3658 0.36578431 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 55.659 54.192 2;3 3.5866E-50 26701 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 290.5 277.67 438470000 81273000 75351000 78056000 0 0 0 11658000 7587900 15914000 0 0 0 25014000 24889000 21818000 0 0 0 30764000 32396000 33748000 0 0 0 19589 1455 18977 363825;363826;363827;363828;363829;363830;363831;363832;363833;363834;363835;363836;363837;363838;363839;363840;363841;363842;363843;363844;363845;363846;363847 221920;221921;221922 221922 3 TELFLVEGDSAGGSAK Unmodified 1579.773 0.77296676 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 35.955 34.477 2 4.4679E-08 16447 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.29 134.13 86661000 13919000 14787000 14161000 0 0 0 0 8250800 0 0 0 0 0 9348100 7365100 0 0 0 9738800 0 9091500 0 0 0 19590 1164 18978 363848;363849;363850;363851;363852;363853;363854;363855 221923;221924 221924 2 TELGDELR Unmodified 931.46108 0.4610751 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 19.996 20.501 2 0.00080313 8010 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.5 77.108 114340000 17851000 15329000 14408000 0 0 0 0 0 0 0 0 0 11274000 14556000 12679000 0 0 0 6415300 9013300 12811000 0 0 0 19591 1221 18979 363856;363857;363858;363859;363860;363861;363862;363863;363864 221925;221926;221927;221928;221929;221930 221926 6 TELLTLLAGMLR Unmodified 1329.769 0.76900778 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.783 54.364 2 1.0368E-11 26963 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 187.22 187.22 219690000 39618000 47990000 0 4779300 3929900 5583700 0 0 2466300 0 0 0 15437000 11236000 10878000 0 0 0 24207000 28190000 25374000 0 0 0 19592 198 18980 363865;363866;363867;363868;363869;363870;363871;363872;363873;363874;363875;363876;363877 221931;221932 221931 2 TELPIDENTPR Unmodified 1283.6357 0.635745 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 0 By MS/MS 1 25.25 23.747 2 0.00031439 10867 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.029 80.335 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19593 1728 18981 363878 221933 221933 1 TELPIGAYQVSGEYAMIK Unmodified 1968.9867 0.98666471 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 46.936 45.546 2;3 2.1374E-13 22141 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 156.08 156.08 878930000 83500000 75513000 75656000 0 0 0 66890000 65290000 57920000 0 0 0 84828000 69439000 66230000 0 0 0 75326000 81999000 76339000 0 0 0 19594 715 18982 363879;363880;363881;363882;363883;363884;363885;363886;363887;363888;363889;363890;363891;363892;363893;363894;363895;363896;363897;363898;363899;363900;363901;363902 221934;221935;221936;221937;221938;221939;221940;221941;221942;221943;221944;221945;221946;221947;221948;221949;221950;221951 221940 18 TELQITLK Unmodified 944.55425 0.5542472 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 28.864 27.568 2 0.00081525 13011 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.99 106.33 189180000 0 1977400 0 0 0 0 19532000 23257000 18325000 0 0 0 16607000 20971000 22572000 0 0 0 21837000 23268000 20831000 0 0 0 19595 1424 18983 363903;363904;363905;363906;363907;363908;363909;363910;363911;363912 221952;221953;221954;221955;221956;221957;221958;221959;221960 221954 9 TEMDEYIR Unmodified 1055.4594 0.45936054 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.13 23.249 2 1.7147E-06 9698 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 190.88 190.88 812580000 40485000 26946000 37545000 3121600 2466100 2526600 87142000 91294000 92870000 12166000 12390000 13841000 58334000 60952000 59235000 2363000 1547200 1338400 66439000 57344000 64894000 5777800 6312900 5253700 19596 1742 18984 363913;363914;363915;363916;363917;363918;363919;363920;363921;363922;363923;363924;363925;363926;363927;363928;363929;363930;363931;363932;363933;363934;363935;363936 221961;221962;221963;221964;221965;221966;221967;221968;221969;221970;221971;221972;221973;221974;221975;221976;221977;221978;221979;221980;221981 221980 21 TEMGEPDAK Unmodified 976.41716 0.41716137 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.49 12.347 2 0.00025415 3232 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.85 116.37 467460000 91626000 73713000 77775000 0 1135700 0 34609000 34665000 35822000 0 0 0 19818000 16412000 20035000 0 0 0 15346000 23430000 23071000 0 0 0 19597 219 18985 363937;363938;363939;363940;363941;363942;363943;363944;363945;363946;363947;363948;363949 221982;221983;221984;221985;221986;221987;221988;221989 221984 8 TEMQDELVK Unmodified 1091.5169 0.51687542 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.852 20.107 2 0.00030936 6372 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 117.04 106.33 529170000 33861000 34222000 32598000 11479000 8590800 10423000 31826000 30210000 26993000 16200000 11793000 13109000 26410000 22038000 25058000 2645500 2373100 2952700 54354000 49517000 49691000 9430900 12255000 11134000 19598 1094 18986 363950;363951;363952;363953;363954;363955;363956;363957;363958;363959;363960;363961;363962;363963;363964;363965;363966;363967;363968;363969;363970;363971;363972;363973 221990;221991;221992;221993;221994;221995;221996;221997;221998;221999;222000;222001;222002;222003;222004;222005;222006;222007;222008;222009 221994 20 TENELEEIKVELIDR Unmodified 1828.9418 0.941823 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 42.983 41.576 3 5.0458E-07 20244 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.33 112.3 102400000 18981000 12317000 9639400 0 547300 0 8032400 0 0 0 1049100 0 6474200 6341500 8643800 0 0 1774900 10080000 8643400 9878800 0 0 0 19599 1355 18987 363974;363975;363976;363977;363978;363979;363980;363981;363982;363983;363984;363985;363986 222010;222011;222012;222013;222014 222013 5 TENLQAER Unmodified 959.46722 0.46722311 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 11.268 12.127 2 0.010215 3244 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 78.77 17.091 1496400000 294920000 246360000 227280000 0 9339000 7194100 0 0 392880000 0 0 0 0 0 0 0 0 0 318410000 0 0 0 0 0 19600 441 18988 363987;363988;363989;363990;363991;363992;363993 222015;222016 222016 1 TENLYILPASQTR Unmodified 1504.7886 0.78855725 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.592 33.118 2 5.6932E-18 15783 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 221.59 214.93 1927900000 171540000 172610000 143600000 7323700 8941100 9163800 142470000 132220000 138200000 41630000 39028000 34560000 122930000 110420000 104360000 11117000 6314400 5229400 167590000 163360000 152210000 15673000 15128000 12276000 19601 899 18989 363994;363995;363996;363997;363998;363999;364000;364001;364002;364003;364004;364005;364006;364007;364008;364009;364010;364011;364012;364013;364014;364015;364016;364017 222017;222018;222019;222020;222021;222022;222023;222024;222025;222026;222027;222028;222029;222030;222031;222032;222033;222034;222035;222036;222037 222028 21 TEPAPPEHAIK Unmodified 1188.6139 0.61388734 835 P0AE60 cedA Cell division activator CedA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 12.517 12.742 2;3 0.0012349 2888 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 68.536 53.856 547520000 14364000 0 3932500 0 0 0 4813700 0 0 0 0 0 0 0 0 216180000 152420000 155810000 0 0 0 0 0 0 19602 835 18990 364018;364019;364020;364021;364022;364023;364024;364025;364026 222038;222039;222040;222041;222042;222043 222042 6 TEPGDENNQDISALVGK Unmodified 1785.8381 0.83808621 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.342 29.915 2 1.6614E-09 14327 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.32 128.01 623600000 125460000 116460000 103310000 1958000 0 0 63155000 57970000 69705000 0 0 1363500 13596000 13263000 14266000 0 0 0 14724000 14253000 14116000 0 0 0 19603 757 18991 364027;364028;364029;364030;364031;364032;364033;364034;364035;364036;364037;364038;364039;364040 222044;222045;222046;222047;222048;222049;222050;222051;222052;222053;222054;222055 222044 12 TEPKPVAQTPK Unmodified 1194.6608 0.66083754 1072 P11557 damX Cell division protein DamX yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.012 11.694 2 0.00019216 2886 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.71 103.04 225620000 24140000 12329000 0 1756700 2992900 3725700 12955000 13372000 12631000 12974000 9341000 14010000 14763000 14643000 11367000 0 0 0 12342000 15695000 15903000 7892900 5449100 7338300 19604 1072 18992 364041;364042;364043;364044;364045;364046;364047;364048;364049;364050;364051;364052;364053;364054;364055;364056;364057;364058;364059;364060 222056;222057;222058;222059;222060;222061;222062;222063;222064;222065;222066;222067;222068;222069;222070;222071;222072 222059 17 TEPLQITTELPGR Unmodified 1453.7777 0.77765821 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 1 37.032 35.359 2;3 5.8946E-13 17042 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 199.68 188.65 1276100000 53300000 58033000 52317000 10288000 7093900 10694000 95383000 89915000 104730000 58999000 66280000 60936000 59995000 53942000 53066000 8332700 5955300 5795200 113020000 115130000 123820000 28770000 20673000 19586000 19605 826 18993 364061;364062;364063;364064;364065;364066;364067;364068;364069;364070;364071;364072;364073;364074;364075;364076;364077;364078;364079;364080;364081;364082;364083;364084;364085;364086;364087;364088;364089;364090;364091;364092;364093;364094;364095;364096;364097;364098;364099;364100;364101 222073;222074;222075;222076;222077;222078;222079;222080;222081;222082;222083;222084;222085;222086;222087;222088;222089;222090;222091;222092;222093;222094;222095;222096;222097;222098;222099;222100 222090 25 TEPLTETPELSAK Unmodified 1414.7191 0.71914028 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 26.415 24.998 2 8.9209E-06 11110 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.04 139.94 149470000 39599000 32001000 26912000 2088900 2216300 2380400 12390000 12874000 9389100 1496200 2566300 1813200 0 0 0 0 0 0 3748800 0 0 0 0 0 19606 1377 18994 364102;364103;364104;364105;364106;364107;364108;364109;364110;364111;364112;364113;364114 222101;222102;222103;222104;222105 222105 4 TEPTYTLYATFDNIGGLK Unmodified 2002.9888 0.9887732 1695 P64604 mlaD Probable phospholipid ABC transporter-binding protein MlaD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 51.931 50.671 3 7.0409E-05 20365 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 74.786 73.754 24579000 0 0 0 933800 815930 605870 0 0 0 5127400 4487300 4030200 0 0 0 1909500 0 0 0 0 0 3155000 3513600 0 19607 1695 18995 364115;364116;364117;364118;364119;364120;364121;364122;364123 222106;222107;222108;222109 222107 4 TEQAQLAR Unmodified 915.47739 0.47739386 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 11.269 12.107 2 0.15671 3178 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 47.916 27.361 66236000 16001000 13422000 0 0 0 0 0 0 7250300 0 0 0 5772600 7189800 0 0 0 0 7799400 0 8800400 0 0 0 19608 1006 18996 364124;364125;364126;364127;364128;364129;364130 222110 222110 0 TEQATTTDELAFTR Unmodified 1582.7475 0.74748029 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 28.105 26.908 2 3.931E-27 12243 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 245.58 228.36 121750000 32664000 31571000 26422000 0 0 0 10586000 8758800 5474200 0 0 0 2753500 3522100 0 0 0 0 0 0 0 0 0 0 19609 195 18997 364131;364132;364133;364134;364135;364136;364137;364138 222111;222112;222113 222112 3 TEQATTTDELAFTRPYGEQEK Unmodified 2414.1238 0.12376313 195 P08997 aceB Malate synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1 1 2 3 2 1 1 1 2 2 2 2 2 2 28.758 27.385 2;3 1.5948E-117 12876 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 456.95 452.48 9968600000 2640200000 2095200000 2089600000 3150400 4608100 4654000 614300000 644070000 617980000 3016100 1968600 1771900 188470000 164430000 152610000 0 0 0 236320000 266790000 239490000 0 0 0 19610 195 18998 364139;364140;364141;364142;364143;364144;364145;364146;364147;364148;364149;364150;364151;364152;364153;364154;364155;364156;364157;364158;364159;364160;364161;364162;364163;364164;364165;364166;364167;364168;364169;364170 222114;222115;222116;222117;222118;222119;222120;222121;222122;222123;222124;222125;222126;222127;222128;222129;222130;222131;222132;222133;222134;222135;222136;222137;222138;222139;222140 222117 26 TEQEMLEQGR Unmodified 1219.5503 0.55030081 1859 P76422 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 15.373 16.278 2 0.00021337 5625 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.15 103.58 48413000 0 0 0 0 0 0 0 10838000 0 0 0 0 6023300 4952800 5511900 0 0 0 0 10340000 10747000 0 0 0 19611 1859 18999 364171;364172;364173;364174;364175;364176;364177 222141;222142 222142 1 TEQFCPNAK Unmodified 1093.4862 0.48624399 173 P08142 ilvB Acetolactate synthase isozyme 1 large subunit yes yes 0 0 0 By MS/MS 1 12.847 13.862 2 0.18465 3927 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 41.652 27.495 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19612 173 19000 364178 222143 222143 1 TEQFMTQFLK Unmodified 1271.622 0.62200919 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.4 39.732 2 0.00017896 18483 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 123.21 118.24 1131300000 113030000 113930000 95691000 0 0 0 103150000 96868000 98761000 0 0 0 74561000 70909000 69598000 0 0 0 92077000 101680000 101050000 0 0 0 19613 1132 19001 364179;364180;364181;364182;364183;364184;364185;364186;364187;364188;364189;364190 222144;222145;222146;222147;222148;222149;222150;222151;222152;222153;222154 222154 9 TEQILALTGCDR Unmodified 1375.6766 0.67656396 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.446 31.106 2 5.4569E-12 14753 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 194.74 183.14 451320000 70697000 61564000 51827000 0 0 0 65542000 59172000 59068000 0 0 0 10893000 14080000 12803000 0 0 0 16248000 11562000 17869000 0 0 0 19614 401 19002 364191;364192;364193;364194;364195;364196;364197;364198;364199;364200;364201;364202 222155;222156;222157;222158;222159;222160;222161 222158 7 TEQLQLDTAMWDTAQAK Unmodified 1948.92 0.9200417 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 1 1 1 1 2 1 2 3 43.571 42.104 2;3 3.974E-31 20286 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 235.73 231.86 1307200000 401720000 393190000 331930000 0 0 0 30374000 11789000 7294700 0 0 0 8753800 9129100 24065000 0 0 0 15990000 50449000 22539000 0 0 0 19615 852 19003 364203;364204;364205;364206;364207;364208;364209;364210;364211;364212;364213;364214;364215;364216;364217;364218;364219;364220;364221;364222;364223;364224 222162;222163;222164;222165;222166;222167;222168;222169;222170;222171;222172;222173;222174;222175;222176 222169 13 TEQQLTAMK Unmodified 1048.5223 0.52229515 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.506 15.113 2 0.00017574 4840 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.69 117.62 700390000 106870000 122020000 118210000 3170300 3169000 3392600 29523000 26376000 26426000 4290300 4046600 4408300 28193000 27798000 26610000 2077900 1977400 0 51413000 53678000 50122000 2237400 2087700 2290900 19616 1302 19004 364225;364226;364227;364228;364229;364230;364231;364232;364233;364234;364235;364236;364237;364238;364239;364240;364241;364242;364243;364244;364245;364246;364247;364248 222177;222178;222179;222180;222181;222182;222183;222184;222185;222186;222187;222188;222189;222190;222191;222192;222193;222194 222191 13 TEQQYENATR Unmodified 1238.5527 0.55274365 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.339 11.972 2 6.8865E-17 2509 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 230.24 226.5 319520000 17187000 13036000 12460000 5976500 8283500 6124400 19415000 18719000 16715000 21814000 18916000 18272000 16501000 12591000 10934000 2898500 2733500 3424600 24526000 28849000 27547000 12593000 0 0 19617 252 19005 364249;364250;364251;364252;364253;364254;364255;364256;364257;364258;364259;364260;364261;364262;364263;364264;364265;364266;364267;364268;364269;364270 222195;222196;222197;222198;222199;222200;222201;222202;222203;222204;222205;222206;222207;222208;222209;222210;222211 222200 16 TEQTQPAAPAKPTSDIPN Unmodified 1864.9167 0.91667089 1000 P0AG99 secG Protein-export membrane protein SecG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 19.203 19.534 2;3 1.0289E-16 7541 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 203.29 198.01 1076300000 29155000 27107000 26062000 9437600 8951700 9973600 79801000 81260000 66358000 35806000 28680000 31427000 75370000 83252000 77895000 8068700 4750700 4598900 107910000 113000000 109020000 19047000 19872000 19546000 19618 1000 19006 364271;364272;364273;364274;364275;364276;364277;364278;364279;364280;364281;364282;364283;364284;364285;364286;364287;364288;364289;364290;364291;364292;364293;364294;364295;364296;364297;364298;364299;364300;364301;364302;364303;364304;364305;364306;364307;364308;364309;364310;364311;364312;364313;364314;364315;364316;364317;364318 222212;222213;222214;222215;222216;222217;222218;222219;222220;222221;222222;222223;222224;222225;222226;222227;222228;222229;222230;222231;222232;222233;222234;222235;222236;222237;222238;222239;222240;222241;222242;222243;222244;222245;222246 222229 35 TESDGWFFDVWQPDHIDTTECWPLR Unmodified 3136.3661 0.36613544 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 55.091 53.599 3 1.1049E-10 26568 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 129.34 129 177440000 0 0 0 0 0 0 30583000 30684000 36098000 0 0 0 32331000 24137000 23607000 0 0 0 0 0 0 0 0 0 19619 520 19007 364319;364320;364321;364322;364323;364324 222247 222247 1 TESEEMLAK Oxidation (M) 1052.4696 0.46959087 771 P0AD61 pykF Pyruvate kinase I yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.489 12.321 2 0.0004457 3219 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.5 107.05 403790000 19034000 17533000 21703000 0 0 0 59982000 53006000 49736000 0 0 0 30014000 24134000 23137000 0 0 0 39433000 34888000 31185000 0 0 0 19620 771 19008 364325;364326;364327;364328;364329;364330;364331;364332;364333;364334;364335;364336 222248;222249;222250;222251;222252;222253;222254;222255;222256;222257;222258;222259 222249 385 12 TESEEMLAK Unmodified 1036.4747 0.47467625 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.174 14.935 2 0.00031292 4482 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 116.73 111.99 5083000000 344570000 333260000 329810000 0 0 1052800 485120000 503340000 473190000 3058600 2105600 0 427400000 415730000 402870000 0 0 0 463020000 476480000 421930000 0 0 0 19621 771 19008 364337;364338;364339;364340;364341;364342;364343;364344;364345;364346;364347;364348;364349;364350;364351 222260;222261;222262;222263;222264;222265;222266;222267;222268;222269;222270;222271 222270 12 TESFAQLFEESLK Unmodified 1527.7457 0.74568938 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 1 2 1 1 2 1 1 1 1 2 2 2 1 53.471 52.146 2;3 2.3083E-12 24517 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 189.72 184.54 1445000000 295060000 277730000 272740000 2259500 2762700 0 79983000 82918000 88748000 0 3933500 4487000 55883000 50350000 50286000 3884200 2977600 0 67851000 52057000 49397000 0 1655000 0 19622 990 19009 364352;364353;364354;364355;364356;364357;364358;364359;364360;364361;364362;364363;364364;364365;364366;364367;364368;364369;364370;364371;364372;364373;364374;364375;364376;364377;364378;364379 222272;222273;222274;222275;222276;222277;222278;222279;222280;222281;222282;222283;222284;222285;222286 222285 15 TESFAQLFEESLKEIETRPGSIVR Unmodified 2765.4236 0.42357396 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 2 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.384 53.149 4 2.4822E-15 19419 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 146.64 145.93 277660000 15326000 0 17637000 12824000 19458000 27608000 4250400 4050300 2829600 12889000 20371000 20401000 5540800 4966300 0 16713000 32757000 24310000 4455000 3624000 3872300 7125700 7537400 9112900 19623 990 19010 364380;364381;364382;364383;364384;364385;364386;364387;364388;364389;364390;364391;364392;364393;364394;364395;364396;364397;364398;364399;364400;364401 222287;222288;222289;222290;222291;222292 222291 6 TETGVHR Unmodified 798.39842 0.39841526 149 P07012 prfB Peptide chain release factor 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 5.1819 6.0613 2 0.0014403 1029 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 129.96 117.41 872100000 75920000 76045000 62672000 716650 285870 0 90017000 80899000 97254000 0 0 0 71929000 63498000 0 0 0 0 84038000 83929000 84896000 0 0 0 19624 149 19011 364402;364403;364404;364405;364406;364407;364408;364409;364410;364411;364412;364413;364414 222293;222294;222295;222296;222297;222298 222293 6 TETMILR Oxidation (M) 878.45315 0.45315295 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.893 15.628 2 0.1205 5295 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 48.346 42.585 144770000 11353000 12641000 10488000 0 0 0 20966000 15806000 17211000 0 0 0 0 0 0 0 0 0 18145000 19362000 18797000 0 0 0 19625 333 19012 364415;364416;364417;364418;364419;364420;364421;364422;364423 222299;222300 222299 0 TETMILR Unmodified 862.45824 0.45823833 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 20.436 20.851 1;2 0.00026773 8022 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.69 125.59 4950500000 480990000 438570000 447740000 0 0 0 346040000 344480000 364780000 0 0 0 394680000 375620000 322380000 0 0 0 455710000 492160000 487340000 0 0 0 19626 333 19012 364424;364425;364426;364427;364428;364429;364430;364431;364432;364433;364434;364435;364436;364437;364438;364439;364440;364441;364442;364443;364444;364445;364446;364447 222301;222302;222303;222304;222305;222306;222307;222308;222309 222307 2 TETMILRDPFDA Unmodified 1407.6704 0.67041595 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.729 44.184 2 5.1683E-08 21557 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 164.66 160.21 1355100000 134890000 113700000 115160000 0 1644200 0 81956000 78480000 80163000 0 1438600 1633500 115000000 114760000 105200000 0 0 0 137040000 149970000 124070000 0 0 0 19627 333 19013 364448;364449;364450;364451;364452;364453;364454;364455;364456;364457;364458;364459;364460;364461;364462 222310;222311;222312;222313;222314;222315;222316;222317;222318;222319;222320;222321 222313 12 TEVAVVYDPMR Unmodified 1278.6278 0.62782285 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 2 1 1 1 1 1 33.784 32.345 2 2.3716E-07 15392 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 163.32 158.35 451380000 31152000 30354000 30152000 0 0 0 37514000 58905000 39932000 0 0 0 32238000 33118000 29777000 0 0 0 43915000 47035000 37284000 0 0 0 19628 787 19014 364463;364464;364465;364466;364467;364468;364469;364470;364471;364472;364473;364474;364475;364476;364477 222322;222323;222324;222325;222326;222327;222328;222329;222330;222331;222332;222333 222328 12 TEVDELTR Unmodified 961.47164 0.47163978 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.276 17.767 2 0.00022739 6445 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.27 80.356 984280000 147070000 163270000 137430000 19065000 18948000 16443000 112140000 108230000 89629000 0 4978100 5301300 31986000 25062000 22111000 1220100 945700 805670 22235000 26014000 25240000 2459600 1973900 1715600 19629 613 19015 364478;364479;364480;364481;364482;364483;364484;364485;364486;364487;364488;364489;364490;364491;364492;364493;364494;364495;364496;364497;364498;364499;364500 222334;222335;222336;222337;222338 222335 4 TEVEEYTVDNTTK Unmodified 1527.694 0.69404774 1772 P75791 ybiU Uncharacterized protein YbiU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.403 19.879 2 2.72E-17 7570 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 205.53 204.34 90023000 7424900 9312900 8482000 0 0 0 6922700 8958800 11177000 0 0 0 3610600 4006300 4127300 0 0 0 7373900 8150500 10476000 0 0 0 19630 1772 19016 364501;364502;364503;364504;364505;364506;364507;364508;364509;364510;364511;364512 222339;222340;222341;222342;222343;222344;222345;222346;222347;222348;222349 222346 11 TEVELLK Unmodified 830.47493 0.47493425 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 8 4 1 1 1 9 12 12 1 1 1 5 4 7 24.601 24.039 1;2 0.0022268 8308 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 105.2 51.491 81244000000 745920000 763420000 676530000 40670000 48593000 44853000 708210000 682670000 545150000 5972800000 6381500000 5483200000 602130000 584710000 505340000 10227000000 10900000000 12005000000 607330000 707310000 748570000 8204100000 7163000000 6895700000 19631 383 19017 364513;364514;364515;364516;364517;364518;364519;364520;364521;364522;364523;364524;364525;364526;364527;364528;364529;364530;364531;364532;364533;364534;364535;364536;364537;364538;364539;364540;364541;364542;364543;364544;364545;364546;364547;364548;364549;364550;364551;364552;364553;364554;364555;364556;364557;364558;364559;364560;364561;364562;364563;364564;364565;364566;364567;364568;364569;364570;364571;364572;364573;364574;364575;364576;364577;364578;364579;364580;364581;364582;364583;364584;364585;364586;364587;364588;364589;364590;364591;364592;364593 222350;222351;222352;222353;222354;222355;222356;222357;222358;222359;222360;222361;222362;222363;222364;222365;222366;222367;222368;222369;222370;222371;222372;222373;222374;222375;222376;222377;222378;222379;222380;222381;222382;222383;222384;222385;222386;222387;222388;222389;222390;222391;222392;222393;222394;222395;222396;222397;222398;222399;222400;222401;222402;222403;222404;222405;222406;222407;222408;222409;222410;222411;222412;222413;222414;222415;222416;222417;222418;222419;222420;222421;222422;222423;222424;222425 222390 73 TEVTYGDVTLDFGKPFEK Unmodified 2044.9993 0.99933788 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 1 2 2 2 44.557 43.003 2;3 1.0122E-44 20959 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 255.15 197.98 4864500000 390810000 400430000 339260000 0 1765600 0 401670000 392990000 365410000 1528200 1377000 1144000 398470000 352980000 329940000 0 1028800 0 517800000 519080000 448800000 0 0 0 19632 448 19018 364594;364595;364596;364597;364598;364599;364600;364601;364602;364603;364604;364605;364606;364607;364608;364609;364610;364611;364612;364613;364614;364615;364616;364617;364618;364619;364620;364621;364622 222426;222427;222428;222429;222430;222431;222432;222433;222434;222435;222436;222437;222438;222439;222440;222441;222442;222443;222444;222445;222446;222447;222448;222449 222434 24 TEYCGQLR Unmodified 1025.46 0.46002924 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.419 14.285 2 0.00043507 4415 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 139.27 125.27 2213400000 112090000 116120000 101170000 0 0 0 190130000 185280000 196910000 0 0 0 216750000 222880000 187820000 0 0 0 216530000 237700000 229960000 0 0 0 19633 1189 19019 364623;364624;364625;364626;364627;364628;364629;364630;364631;364632;364633;364634 222450;222451;222452;222453;222454;222455;222456;222457;222458;222459;222460 222455 10 TEYELACMR Unmodified 1171.5002 0.50017949 1170 P21165 pepQ Xaa-Pro dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.577 24.505 2 4.2464E-11 11041 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 204.65 203.05 1332100000 144450000 151900000 117700000 0 0 0 125360000 111860000 128800000 0 0 0 80991000 71372000 70697000 0 0 0 115190000 107950000 105840000 0 0 0 19634 1170 19020 364635;364636;364637;364638;364639;364640;364641;364642;364643;364644;364645;364646 222461;222462;222463;222464;222465;222466;222467;222468;222469;222470;222471;222472 222464 12 TFADFAR Unmodified 826.39735 0.39735263 229 P0A6C1 nfo Endonuclease 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.295 24.236 2 0.0012711 11103 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 132.96 113.08 231680000 18478000 18854000 12205000 0 0 0 23677000 25570000 25125000 0 0 0 13447000 10995000 12497000 0 0 0 23127000 23985000 23726000 0 0 0 19635 229 19021 364647;364648;364649;364650;364651;364652;364653;364654;364655;364656;364657;364658 222473;222474;222475;222476;222477;222478;222479;222480;222481;222482;222483;222484 222474 12 TFADVDEAQALR Unmodified 1334.6466 0.64664404 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 30.628 28.807 2 0.013961 13878 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 61.353 48.727 60931000 0 10177000 5723100 2105800 0 0 12897000 13207000 0 5646000 5721500 5453000 0 0 0 0 0 0 0 0 0 0 0 0 19636 1980 19022 364659;364660;364661;364662;364663;364664;364665;364666 222485;222486 222485 0 TFAEAFAK Unmodified 883.44397 0.44396847 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 23.952 23.063 2 0.0039041 10072 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.142 73.703 635520000 162400000 147170000 127150000 210370 0 0 0 0 2250900 0 0 0 0 0 0 0 0 0 64442000 64166000 57317000 3579100 3159100 3673800 19637 65 19023 364667;364668;364669;364670;364671;364672;364673;364674;364675;364676;364677 222487;222488;222489;222490;222491;222492;222493;222494;222495 222491 9 TFAETATAGEWQGK Unmodified 1495.6943 0.69432251 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 26.729 25.553 2;3 3.6995E-27 11481 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 245.76 244.9 2065100000 0 0 0 2514600 2059200 3112200 167090000 156750000 166070000 3423000 1863300 2754800 274480000 249590000 259740000 2594400 1749100 2239900 263570000 248090000 245440000 2819600 4054600 5135500 19638 38 19024 364678;364679;364680;364681;364682;364683;364684;364685;364686;364687;364688;364689;364690;364691;364692;364693;364694;364695;364696;364697;364698;364699;364700;364701;364702;364703 222496;222497;222498;222499;222500;222501;222502;222503;222504;222505;222506;222507;222508;222509;222510;222511;222512;222513;222514;222515;222516;222517 222506 22 TFAHVDPVKEPIPVIPTCHYMMGGIPTK Unmodified 3134.5755 0.57554005 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 39.876 38.258 4;5 1.5842E-07 14959 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 97.691 95.581 1041300000 54063000 56560000 42849000 35151000 45145000 35248000 23898000 25946000 31576000 20887000 17922000 20136000 43334000 62883000 16939000 13962000 10292000 9944400 84188000 106540000 116050000 48224000 60157000 59366000 19639 698 19025 364704;364705;364706;364707;364708;364709;364710;364711;364712;364713;364714;364715;364716;364717;364718;364719;364720;364721;364722;364723;364724;364725;364726;364727;364728;364729;364730;364731;364732;364733;364734;364735;364736;364737;364738;364739;364740;364741;364742;364743;364744;364745;364746;364747;364748;364749;364750 222518;222519;222520;222521;222522;222523;222524;222525;222526;222527;222528;222529;222530;222531;222532;222533;222534;222535;222536;222537;222538;222539;222540;222541;222542;222543;222544;222545;222546;222547;222548;222549;222550 222527 33 TFAIISHPDAGK Unmodified 1255.6561 0.65608651 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 21.067 21.405 2;3 1.3689E-06 8629 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 148.91 142.25 748980000 52126000 46195000 47725000 0 0 0 42191000 33028000 46427000 0 0 0 72076000 61376000 58536000 0 0 0 88478000 100560000 100260000 0 0 0 19640 346 19026 364751;364752;364753;364754;364755;364756;364757;364758;364759;364760;364761;364762;364763;364764;364765;364766;364767;364768;364769;364770;364771;364772;364773;364774 222551;222552;222553;222554;222555;222556;222557;222558;222559;222560;222561;222562;222563;222564;222565;222566;222567;222568;222569;222570 222557 16 TFAISPGHMNQLR Unmodified 1470.7402 0.74016727 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 25.903 24.895 2 0.00021099 11231 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 81.338 75.097 33650000 3780000 1993800 2298600 0 0 0 0 0 0 0 0 0 3022200 3590200 4218000 0 0 0 5178700 5016200 4552400 0 0 0 19641 891 19027 364775;364776;364777;364778;364779;364780;364781;364782;364783 222571;222572;222573 222572 0 TFANMLK Unmodified 823.42621 0.42620992 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 24.674 24.082 2 0.0073714 10107 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 91.584 71.702 149520000 0 0 0 0 0 0 0 0 0 0 0 0 38059000 33651000 37803000 2467100 2746300 2744000 8307000 13180000 10561000 0 0 0 19642 647 19028 364784;364785;364786;364787;364788;364789;364790;364791;364792 222574;222575;222576;222577 222577 3 TFAQDLTNQK Unmodified 1164.5775 0.57750184 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 20.964 21.289 2 1.0141E-08 8132 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 182.53 171.31 3609400000 17119000 18764000 17986000 0 747320 0 325870000 418270000 423080000 0 0 0 441110000 400780000 386550000 0 0 0 404590000 408390000 346140000 0 0 0 19643 994 19029 364793;364794;364795;364796;364797;364798;364799;364800;364801;364802;364803;364804;364805 222578;222579;222580;222581;222582;222583;222584;222585;222586;222587;222588;222589;222590 222585 13 TFAQDLTNQKGEDAWPITSTTFILIHK Unmodified 3074.5713 0.57130083 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1 1 1 1 1 1 1 1 1 50.51 49.041 3;4 8.8812E-16 23663 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.54 137.82 564440000 0 0 0 0 0 0 157560000 178280000 22225000 8806700 6115900 7068900 26200000 22131000 23117000 0 0 0 27728000 32336000 28899000 9798800 0 14165000 19644 994 19030 364806;364807;364808;364809;364810;364811;364812;364813;364814;364815;364816;364817;364818;364819;364820;364821 222591;222592;222593;222594;222595;222596;222597;222598;222599;222600 222597 10 TFATMDHNVSTQTK Unmodified 1579.7301 0.73005609 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 2 1 1 2 2 1 14.798 15.568 2;3 1.2379E-14 5189 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 215.77 212 211430000 56556000 56892000 55181000 0 0 674160 0 0 3558800 0 0 0 5730700 6326300 5373500 0 0 0 4819200 6375300 9340700 0 599260 0 19645 225 19031 364822;364823;364824;364825;364826;364827;364828;364829;364830;364831;364832;364833;364834;364835;364836;364837;364838;364839 222601;222602;222603;222604;222605;222606;222607 222603 6 TFAYTNHTLMPEALER Unmodified 1892.9091 0.90908309 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 34.64 33.038 2;3 5.5216E-31 15661 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 279.75 274.26 1590800000 44316000 44798000 42144000 0 1369100 0 144210000 145630000 160040000 61405000 52907000 57783000 104720000 98905000 93058000 23618000 13940000 20466000 135920000 153360000 142530000 17305000 17052000 15327000 19646 30 19032 364840;364841;364842;364843;364844;364845;364846;364847;364848;364849;364850;364851;364852;364853;364854;364855;364856;364857;364858;364859;364860;364861;364862;364863;364864;364865;364866;364867;364868;364869;364870;364871;364872;364873;364874;364875;364876;364877;364878 222608;222609;222610;222611;222612;222613;222614;222615;222616;222617;222618;222619;222620;222621;222622;222623;222624;222625;222626;222627;222628;222629;222630;222631;222632;222633;222634;222635;222636;222637;222638;222639;222640;222641 222631 34 TFCAHAPGAVEPLQSAIK Unmodified 1895.9564 0.95636763 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 29.389 28.024 2;3 4.0625E-29 12982 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 214.47 204.24 1285700000 60037000 55434000 51822000 29932000 29558000 33043000 65418000 72158000 74270000 41033000 36678000 35826000 76118000 71299000 80488000 10771000 6932100 7655500 111170000 105220000 109210000 40887000 37325000 43412000 19647 1383 19033 364879;364880;364881;364882;364883;364884;364885;364886;364887;364888;364889;364890;364891;364892;364893;364894;364895;364896;364897;364898;364899;364900;364901;364902;364903;364904;364905;364906;364907;364908;364909;364910;364911;364912;364913;364914;364915;364916;364917;364918;364919;364920;364921;364922;364923;364924 222642;222643;222644;222645;222646;222647;222648;222649;222650;222651;222652;222653;222654;222655;222656;222657;222658;222659;222660;222661;222662;222663;222664;222665;222666;222667;222668;222669;222670;222671;222672;222673;222674;222675;222676;222677;222678;222679;222680;222681;222682;222683;222684 222666 43 TFCIPHGGGGPGMGPIGVK Unmodified 1837.8967 0.89674426 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 3 2 2 2 1 1 1 1 1 1 1 1 1 1 1 33.179 31.626 2;3 4.5301E-14 15064 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.83 144.94 2701400000 271580000 213720000 215910000 13223000 14217000 11893000 383800000 358640000 348200000 16002000 11239000 18182000 262560000 266990000 245480000 5625700 4556300 4546600 0 0 0 11338000 12752000 10988000 19648 1409 19034 364925;364926;364927;364928;364929;364930;364931;364932;364933;364934;364935;364936;364937;364938;364939;364940;364941;364942;364943;364944;364945;364946;364947;364948;364949;364950;364951;364952;364953;364954;364955;364956 222685;222686;222687;222688;222689;222690;222691;222692;222693;222694;222695;222696;222697;222698;222699;222700;222701;222702 222696 14 TFDDKAPETVK Unmodified 1249.619 0.6190323 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 1 2 2 2 2 1 2 2 2 13.383 14.137 2;3 3.7053E-26 4342 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 254.24 226.99 7773800000 867300000 880870000 811590000 0 0 0 663640000 554860000 505360000 0 1491900 1793900 577910000 503430000 475570000 0 0 943630 717540000 606630000 604900000 0 0 0 19649 1222 19035 364957;364958;364959;364960;364961;364962;364963;364964;364965;364966;364967;364968;364969;364970;364971;364972;364973;364974;364975;364976;364977;364978;364979;364980;364981;364982;364983;364984;364985 222703;222704;222705;222706;222707;222708;222709;222710;222711;222712;222713;222714;222715;222716;222717;222718;222719;222720;222721;222722;222723;222724;222725;222726;222727 222709 25 TFDDNLDTLLGK Unmodified 1350.6667 0.66671078 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 47.125 45.73 2 0.060143 22155 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 58.699 55.443 75985000 0 0 0 0 0 0 0 11084000 7530100 0 0 0 8304300 7866100 8471200 0 0 0 12229000 11256000 9244000 0 0 0 19650 193 19036 364986;364987;364988;364989;364990;364991;364992;364993 222728 222728 0 TFDTHPEGLNQAEVESAR Unmodified 1999.9235 0.92354718 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 2 2 2 2 2 1 2 2 1 2 1 1 23.858 23.049 2;3 2.6387E-36 9613 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 278.82 276.81 960380000 0 0 0 1153500 1039600 1206900 11796000 9209000 0 5753500 5303000 3650900 249780000 220160000 207080000 23443000 16442000 15871000 56906000 51860000 44942000 13486000 9260200 12036000 19651 647 19037 364994;364995;364996;364997;364998;364999;365000;365001;365002;365003;365004;365005;365006;365007;365008;365009;365010;365011;365012;365013;365014;365015;365016;365017;365018;365019;365020;365021 222729;222730;222731;222732;222733;222734;222735;222736;222737;222738;222739;222740 222738 10 TFDTPTHPNSLALSADGK Unmodified 1870.9061 0.9061062 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 26.436 25.331 2;3 3.4036E-81 11479 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 335.25 313.58 2896700000 182120000 164110000 155940000 6458000 7343600 7548300 171370000 121000000 144220000 15948000 13954000 12085000 200970000 201090000 201370000 16715000 11951000 11870000 364340000 368260000 376590000 41857000 45754000 53834000 19652 1819 19038 365022;365023;365024;365025;365026;365027;365028;365029;365030;365031;365032;365033;365034;365035;365036;365037;365038;365039;365040;365041;365042;365043;365044;365045;365046;365047;365048;365049;365050;365051;365052;365053;365054;365055;365056;365057;365058;365059;365060;365061;365062 222741;222742;222743;222744;222745;222746;222747;222748;222749;222750;222751;222752;222753;222754;222755;222756;222757;222758;222759;222760;222761;222762;222763;222764;222765;222766;222767;222768;222769;222770;222771;222772;222773;222774;222775;222776;222777 222757 37 TFEAIQYYLLK Unmodified 1387.7388 0.73875351 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.534 49.124 2 0.00026622 23152 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 112.84 105.71 252210000 13388000 12578000 11219000 0 0 0 26009000 26175000 25713000 0 0 0 15123000 12466000 17527000 0 0 0 34240000 28462000 29316000 0 0 0 19653 29 19039 365063;365064;365065;365066;365067;365068;365069;365070;365071;365072;365073;365074 222778;222779;222780;222781;222782;222783;222784;222785;222786;222787 222786 5 TFEELLAK Unmodified 949.51205 0.51204804 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 32.768 31.317 2 0.0040258 14837 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 88.942 77.293 128210000 0 0 0 0 0 0 11490000 12248000 12196000 0 0 0 12614000 13064000 12591000 0 0 0 19101000 17652000 17256000 0 0 0 19654 180 19040 365075;365076;365077;365078;365079;365080;365081;365082;365083 222788;222789;222790;222791;222792 222789 5 TFEVLATNGDTHLGGEDFDSR Unmodified 2280.0295 0.029468813 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 37.432 35.573 2;3 1.4936E-102 17639 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 354.39 347.35 2629400000 220270000 226970000 192810000 7643100 8700100 6814300 220320000 203480000 212650000 67083000 58466000 61269000 137490000 127870000 130590000 0 0 0 260970000 231070000 216560000 13978000 10812000 13553000 19655 293 19041 365084;365085;365086;365087;365088;365089;365090;365091;365092;365093;365094;365095;365096;365097;365098;365099;365100;365101;365102;365103;365104;365105;365106;365107;365108;365109;365110;365111;365112;365113;365114;365115;365116;365117;365118;365119;365120;365121;365122;365123;365124;365125 222793;222794;222795;222796;222797;222798;222799;222800;222801;222802;222803;222804;222805;222806;222807;222808;222809;222810;222811;222812;222813;222814;222815;222816;222817;222818;222819;222820;222821;222822;222823 222798 31 TFEVTEDESK Unmodified 1183.5245 0.52446322 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 17.611 18.279 2 4.3994E-06 6683 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.98 130.03 573600000 0 2258700 0 0 0 0 53773000 56469000 66221000 0 0 0 59819000 58759000 56090000 0 0 0 80594000 78724000 60896000 0 0 0 19656 170 19042 365126;365127;365128;365129;365130;365131;365132;365133;365134;365135;365136 222824;222825;222826;222827;222828;222829;222830;222831;222832 222829 8 TFEVTEDESKEK Unmodified 1440.662 0.66201933 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 13.493 14.369 2;3 1.6867E-07 4537 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.24 154.27 853400000 60228000 56468000 46325000 0 0 1286000 88732000 77123000 66217000 0 0 0 71385000 66818000 61453000 0 0 0 89622000 90016000 77730000 0 0 0 19657 170 19043 365137;365138;365139;365140;365141;365142;365143;365144;365145;365146;365147;365148;365149;365150;365151;365152;365153;365154;365155;365156;365157;365158;365159;365160;365161 222833;222834;222835;222836;222837;222838;222839;222840;222841;222842;222843;222844;222845;222846;222847;222848 222840 13 TFFPDFSK Unmodified 987.47018 0.47018322 1660 P63235 gadC Probable glutamate/gamma-aminobutyrate antiporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 2 1 2 2 1 1 1 40.262 38.342 2 0.0050114 18420 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.323 79.632 147250000 11957000 11720000 8631800 413850 687240 783490 36244000 35214000 34637000 4197200 2764200 0 0 0 0 0 0 0 0 0 0 0 0 0 19658 1660 19044 365162;365163;365164;365165;365166;365167;365168;365169;365170;365171;365172;365173;365174;365175;365176;365177 222849;222850;222851;222852;222853;222854;222855;222856 222856 8 TFGEAACQQELEAFLAHR Unmodified 2076.9687 0.96872323 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 45.005 43.584 2;3 3.776E-55 20292 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 292.35 276 1972300000 124960000 110790000 119110000 4809400 5765300 4784600 198140000 183140000 185660000 39731000 51212000 32762000 152540000 153460000 151410000 9727700 6142700 5552400 143920000 138670000 132350000 7292400 5351300 5068200 19659 1196 19045 365178;365179;365180;365181;365182;365183;365184;365185;365186;365187;365188;365189;365190;365191;365192;365193;365194;365195;365196;365197;365198;365199;365200;365201;365202;365203;365204;365205;365206;365207;365208;365209;365210;365211;365212 222857;222858;222859;222860;222861;222862;222863;222864;222865;222866;222867;222868;222869;222870;222871;222872;222873;222874;222875;222876;222877;222878;222879;222880;222881;222882;222883;222884;222885;222886;222887;222888;222889;222890;222891 222891 35 TFGFGAGR Unmodified 811.39769 0.39768698 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1 1 1 1 1 1 23.014 22.323 2 0.00076803 9594 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 123.99 69.452 1325600000 139970000 126000000 134180000 0 0 0 142160000 179080000 177160000 0 0 0 68508000 67527000 66400000 0 0 0 71819000 76362000 76417000 0 0 0 19660 1086 19046 365213;365214;365215;365216;365217;365218;365219;365220;365221;365222;365223;365224;365225;365226 222892;222893;222894;222895;222896;222897;222898;222899;222900;222901 222897 10 TFGMEGLFR Unmodified 1056.5063 0.50625115 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 6 3 5 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 7 5 4 45.234 43.738 1;2 8.0962E-08 21038 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 187.34 177.43 14266000000 349800000 363670000 331870000 1219600000 1700700000 1283300000 456670000 423790000 441970000 245310000 253300000 189470000 235570000 200790000 267080000 68310000 52064000 58241000 406000000 366270000 361310000 1898400000 1453800000 1638700000 19661 939 19047 365227;365228;365229;365230;365231;365232;365233;365234;365235;365236;365237;365238;365239;365240;365241;365242;365243;365244;365245;365246;365247;365248;365249;365250;365251;365252;365253;365254;365255;365256;365257;365258;365259;365260;365261;365262;365263;365264;365265;365266;365267;365268;365269;365270;365271;365272;365273;365274;365275;365276;365277;365278;365279;365280;365281;365282;365283;365284;365285;365286;365287;365288;365289;365290;365291 222902;222903;222904;222905;222906;222907;222908;222909;222910;222911;222912;222913;222914;222915;222916;222917;222918;222919;222920;222921;222922;222923;222924;222925;222926;222927;222928;222929;222930;222931;222932;222933;222934;222935;222936;222937;222938;222939;222940;222941;222942;222943;222944;222945;222946;222947;222948;222949;222950;222951;222952;222953;222954;222955;222956;222957;222958;222959;222960;222961;222962;222963;222964;222965;222966;222967;222968;222969;222970;222971;222972;222973;222974;222975;222976;222977;222978;222979;222980;222981;222982;222983;222984;222985;222986;222987;222988;222989;222990;222991;222992;222993 222914 92 TFGMEGLFR Oxidation (M) 1072.5012 0.50116577 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 7 9 8 1 1 1 2 2 3 1 1 1 2 2 2 7 5 6 37.969 36.187 2 2.2516E-05 10559 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 157.34 152.99 753350000 0 5664000 2760800 120050000 126080000 104320000 8729700 9111100 11005000 8199400 8238800 6775800 0 2534600 2831600 0 375180 0 14050000 15903000 13206000 102450000 103550000 87524000 19662 939 19047 365292;365293;365294;365295;365296;365297;365298;365299;365300;365301;365302;365303;365304;365305;365306;365307;365308;365309;365310;365311;365312;365313;365314;365315;365316;365317;365318;365319;365320;365321;365322;365323;365324;365325;365326;365327;365328;365329;365330;365331;365332;365333;365334;365335;365336;365337;365338;365339;365340;365341;365342;365343;365344;365345;365346;365347;365348;365349;365350;365351;365352;365353;365354 222994;222995;222996;222997;222998;222999;223000;223001;223002;223003;223004;223005;223006;223007;223008;223009;223010;223011;223012;223013;223014;223015;223016;223017;223018;223019;223020;223021;223022;223023;223024;223025;223026;223027;223028;223029;223030;223031;223032;223033;223034;223035;223036;223037;223038;223039;223040;223041;223042;223043;223044;223045;223046;223047;223048;223049;223050;223051;223052;223053;223054;223055;223056;223057 223046 444 61 TFGVQAK Unmodified 749.40719 0.40718903 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 3 3 3 2 1 2 3 3 2 2 1 2 3 3 3 1 13.572 14.263 1;2 0.013152 4102 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 84.064 48.986 1090400000 87541000 89123000 87729000 0 0 3506500 103740000 96669000 88764000 2978400 19312000 22638000 81061000 81153000 56897000 13456000 8827900 12095000 82104000 78867000 71104000 0 0 2851400 19663 1196 19048 365355;365356;365357;365358;365359;365360;365361;365362;365363;365364;365365;365366;365367;365368;365369;365370;365371;365372;365373;365374;365375;365376;365377;365378;365379;365380;365381;365382;365383;365384;365385;365386;365387;365388;365389;365390;365391;365392;365393;365394;365395;365396;365397;365398;365399;365400 223058;223059;223060;223061;223062;223063;223064;223065;223066;223067;223068;223069;223070;223071;223072;223073;223074;223075;223076;223077;223078 223075 15 TFGYYNAGQDCTAACR Unmodified 1853.7461 0.74611686 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 25.175 24.166 2;3 4.763E-40 10573 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 269.28 269.28 378060000 119220000 119260000 93369000 0 0 0 12594000 9625800 10163000 0 0 0 4070600 0 0 0 0 0 5254200 0 4493600 0 0 0 19664 1925 19049 365401;365402;365403;365404;365405;365406;365407;365408;365409;365410;365411;365412 223079;223080;223081;223082;223083;223084 223084 6 TFHAPLIAGTPGQELAVISSSDETK Unmodified 2568.3071 0.30714722 1902 P77376 ydgJ Uncharacterized oxidoreductase YdgJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 44.678 43.309 3 2.458E-10 21258 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.6 120.15 213200000 34812000 30613000 29133000 0 0 0 0 0 0 0 0 0 17904000 15496000 15653000 0 0 0 23975000 22882000 22737000 0 0 0 19665 1902 19050 365413;365414;365415;365416;365417;365418;365419;365420;365421 223085;223086;223087;223088;223089 223085 5 TFHIGGAASR Unmodified 1015.5199 0.51992738 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 2 3 3 3 2 1 1 1 1 1 14.124 14.537 2 4.0142E-05 3479 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 140.45 126.03 13654000000 141680000 123510000 0 0 0 0 134240000 94783000 94578000 576600000 565430000 590680000 0 0 114170000 4435000000 1850400000 1951400000 160330000 149260000 140060000 859980000 848980000 822600000 19666 458 19051 365422;365423;365424;365425;365426;365427;365428;365429;365430;365431;365432;365433;365434;365435;365436;365437;365438;365439;365440;365441;365442;365443;365444;365445;365446;365447;365448 223090;223091;223092;223093;223094;223095;223096;223097;223098;223099;223100;223101;223102;223103;223104;223105;223106;223107;223108;223109;223110;223111;223112;223113;223114;223115 223093 26 TFIGIKEEEINNR Unmodified 1561.81 0.81002097 693 P0AC19 folX D-erythro-7,8-dihydroneopterin triphosphate epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.279 23.382 3 0.00050771 10235 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.628 59.549 113570000 14147000 11737000 8503300 0 0 0 7724600 7127500 6134300 0 0 0 7784900 8047900 7071500 0 0 0 13423000 12084000 9785800 0 0 0 19667 693 19052 365449;365450;365451;365452;365453;365454;365455;365456;365457;365458;365459;365460 223116;223117;223118;223119;223120;223121;223122 223119 1 TFILHDGPPYANGSIHIGHSVNK Unmodified 2473.2502 0.25024147 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 26.571 25.53 4 0.14783 11366 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 19.693 12.071 92245000 12810000 16306000 12537000 0 0 0 12299000 0 12924000 0 0 0 5691400 9495900 0 0 0 0 0 10182000 0 0 0 0 19668 58 19053 365461;365462;365463;365464;365465;365466;365467;365468 223123 223123 1 TFIMPGQQLR Unmodified 1189.6278 0.62776327 978 P0AG16 purF Amidophosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.08 31.641 2 4.7384E-05 14468 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 137.18 114.44 189020000 30599000 32660000 27326000 0 0 0 11407000 12115000 6769000 0 0 0 10181000 8252400 7700300 0 0 0 14588000 14057000 13366000 0 0 0 19669 978 19054 365469;365470;365471;365472;365473;365474;365475;365476;365477;365478;365479;365480 223124;223125;223126;223127;223128 223127 5 TFKDPQPSFNSPIAK Unmodified 1675.857 0.85697116 1973 Q47147 yafJ Putative glutamine amidotransferase YafJ yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.364 24.252 3 0.11014 10750 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 28.032 28.032 70480000 0 9982100 12277000 0 0 0 9693400 9669900 7554900 0 0 0 0 4723500 2424600 0 0 0 9196400 4957800 0 0 0 0 19670 1973 19055 365481;365482;365483;365484;365485;365486;365487;365488;365489 223129 223129 1 TFKPERDGLFCAR Unmodified 1595.7878 0.78784574 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 20.402 20.157 4 0.11908 6265 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 20.009 11.833 11868000 0 0 0 0 0 0 0 0 0 2324000 2040600 1646900 0 0 0 0 0 0 0 0 0 1903300 2150200 1803000 19671 458 19056 365490;365491;365492;365493;365494;365495 223130 223130 1 TFLDQTGGLWASGALYGK Unmodified 1883.9418 0.94176342 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 4 4 3 3 2 3 2 2 3 2 2 52.994 51.652 2;3 2.7609E-29 25541 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 218.11 205.67 5562800000 606790000 610130000 493440000 0 0 0 985400000 982460000 966740000 0 0 0 172040000 159530000 145590000 0 0 0 158250000 141940000 140470000 0 0 0 19672 428 19057 365496;365497;365498;365499;365500;365501;365502;365503;365504;365505;365506;365507;365508;365509;365510;365511;365512;365513;365514;365515;365516;365517;365518;365519;365520;365521;365522;365523;365524;365525;365526;365527;365528;365529 223131;223132;223133;223134;223135;223136;223137;223138;223139;223140;223141;223142;223143;223144;223145;223146;223147;223148;223149;223150;223151;223152;223153;223154 223132 19 TFLEHGIR Unmodified 971.51886 0.51886475 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 1 1 1 1 1 17.717 17.744 2 0.0023006 5193 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 101.64 97.049 30162000 1806000 0 0 0 0 0 0 0 0 8880100 7894400 6702400 0 0 0 2664200 1360600 854800 0 0 0 0 0 0 19673 1196 19058 365530;365531;365532;365533;365534;365535;365536;365537;365538;365539 223155;223156;223157;223158;223159 223156 5 TFLEHGIRASINTDDPGVQGVDIIHEYTVAAPAAGLSREQIR Unmodified 4516.3099 0.3098882 1196 P22333 add Adenosine deaminase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.391 52.176 5 0.17054 25373 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 0.0071569 0.0024001 328120000 14537000 12731000 13074000 0 12304000 15316000 10597000 11719000 13154000 28675000 19849000 22428000 22503000 0 17568000 14982000 15037000 20708000 17140000 15196000 16552000 14049000 0 0 19674 1196 19059 365540;365541;365542;365543;365544;365545;365546;365547;365548;365549;365550;365551;365552;365553;365554;365555;365556;365557;365558;365559 223160 223160 1 TFLVEIGTEELPPK Unmodified 1571.8447 0.84467514 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 1 2 1 1 2 2 2 2 46.334 44.865 2;3 1.5786E-08 21808 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.77 167.96 370480000 34994000 34540000 33090000 0 1099500 0 31167000 27216000 35823000 0 0 0 18245000 18616000 26340000 0 0 0 33030000 40833000 35490000 0 0 0 19675 62 19060 365560;365561;365562;365563;365564;365565;365566;365567;365568;365569;365570;365571;365572;365573;365574;365575;365576;365577;365578;365579;365580;365581;365582 223161;223162;223163;223164;223165;223166;223167;223168;223169;223170;223171;223172;223173;223174;223175;223176;223177;223178;223179;223180;223181;223182;223183;223184;223185;223186;223187;223188;223189;223190;223191;223192;223193;223194;223195;223196 223181 36 TFLVTIGDR Unmodified 1020.5604 0.56039521 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 36.022 34.474 2 9.9943E-05 16588 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.16 112 195140000 48438000 56193000 45225000 0 0 0 4359100 3698300 4495600 0 0 0 5824000 5956400 6592400 0 0 0 0 6816300 7540300 0 0 0 19676 1107 19061 365583;365584;365585;365586;365587;365588;365589;365590;365591;365592;365593 223197;223198 223198 2 TFNCGVGMIIALPAPEVDK Unmodified 2031.0169 0.016918978 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 52.49 51.266 3 1.0337E-06 25083 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.261 88.541 92267000 25726000 28564000 23214000 1924600 2762400 1890800 0 0 2782300 0 0 0 2845100 0 2558200 0 0 0 0 0 0 0 0 0 19677 174 19062 365594;365595;365596;365597;365598;365599;365600;365601;365602 223199;223200;223201 223200 3 TFNEFFVRPLR Unmodified 1424.7565 0.75646926 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.242 36.365 3 0.00058357 14570 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 78.655 74.315 199340000 8401300 5647800 0 2760500 2602100 2033900 20368000 19865000 19910000 6642900 6972700 5863000 14351000 11192000 12450000 0 0 0 17770000 16347000 17641000 4128000 4396300 0 19678 439 19063 365603;365604;365605;365606;365607;365608;365609;365610;365611;365612;365613;365614;365615;365616;365617;365618;365619;365620;365621 223202;223203 223202 2 TFPDYFEQLAR Unmodified 1385.6616 0.66156582 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 47.97 46.573 2 1.6305E-05 22507 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 140.35 131.82 310920000 37742000 35342000 36379000 0 0 0 16339000 20520000 13688000 0 0 0 22598000 21433000 20309000 0 0 0 26377000 29134000 31060000 0 0 0 19679 232 19064 365622;365623;365624;365625;365626;365627;365628;365629;365630;365631;365632;365633;365634 223204;223205;223206;223207;223208;223209;223210;223211;223212;223213;223214;223215;223216 223209 12 TFPSLFEPVHGSAPDIYGK Unmodified 2061.0207 0.020742027 1843 P76251 dmlA D-malate dehydrogenase [decarboxylating] yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 44.377 42.562 3 5.2563E-05 21009 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 78.661 75.6 35173000 0 0 0 0 0 0 10966000 8383400 10783000 0 0 0 0 0 0 0 0 0 0 5040400 0 0 0 0 19680 1843 19065 365635;365636;365637;365638 223217;223218 223218 2 TFPTPPDSWQVVFVEQNLPDGK Unmodified 2500.2274 0.22744034 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 54.438 53.018 2;3 4.0287E-43 26308 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 233.62 229.65 315410000 62563000 125050000 108150000 0 0 0 5940300 0 0 0 0 0 13711000 0 0 0 0 0 0 0 0 0 0 0 19681 1816 19066 365639;365640;365641;365642;365643;365644;365645 223219;223220;223221;223222 223219 4 TFQGLILTLQDYWAR Unmodified 1823.957 0.95701956 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 55.46 54.107 2;3 2.0901E-35 19914 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 304.34 295.83 2386900000 150950000 160530000 153320000 56260000 49200000 45219000 148730000 123550000 142130000 116370000 127500000 110390000 89947000 126790000 82360000 13758000 21734000 21528000 148900000 141470000 160900000 72192000 64309000 58812000 19682 61 19067 365646;365647;365648;365649;365650;365651;365652;365653;365654;365655;365656;365657;365658;365659;365660;365661;365662;365663;365664;365665;365666;365667;365668;365669;365670;365671;365672;365673;365674;365675;365676;365677;365678;365679;365680;365681;365682;365683;365684;365685;365686;365687;365688;365689;365690 223223;223224;223225;223226;223227;223228;223229;223230;223231;223232;223233;223234;223235;223236;223237;223238;223239;223240;223241;223242;223243;223244;223245;223246;223247;223248 223240 24 TFQPSVLK Unmodified 918.51747 0.51746776 361 P0A7P5 rpmH 50S ribosomal protein L34 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.336 22.589 2 0.0066875 9606 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 84.568 46.922 4159100000 484420000 476570000 504640000 3818100 5462700 5785500 193940000 195310000 162710000 14188000 11144000 13514000 259390000 229940000 222320000 7997100 7198100 6977100 411350000 472790000 432010000 11308000 10407000 15889000 19683 361 19068 365691;365692;365693;365694;365695;365696;365697;365698;365699;365700;365701;365702;365703;365704;365705;365706;365707;365708;365709;365710;365711;365712;365713;365714 223249;223250;223251;223252;223253;223254;223255;223256;223257;223258;223259;223260;223261;223262;223263;223264;223265;223266 223262 18 TFQPSVLKR Unmodified 1074.6186 0.61857879 361 P0A7P5 rpmH 50S ribosomal protein L34 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 17.356 17.6 2;3 0.00012526 5271 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 136.16 126.24 348810000 0 0 0 13975000 10321000 7232200 0 0 0 6355900 29140000 26775000 0 0 0 47790000 34103000 40036000 0 0 0 50147000 45671000 37265000 19684 361 19069 365715;365716;365717;365718;365719;365720;365721;365722;365723;365724;365725;365726;365727;365728;365729;365730;365731;365732;365733;365734;365735;365736;365737 223267;223268;223269;223270;223271;223272;223273;223274;223275;223276;223277;223278;223279;223280;223281;223282;223283;223284;223285;223286;223287 223272 19 TFRDELFEHYK Unmodified 1483.7096 0.70957864 37 P00582 polA DNA polymerase I yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 25.207 24.265 3;4 0.00014304 11257 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.914 90.844 631590000 56596000 52678000 46124000 0 0 0 63265000 55189000 69304000 0 0 0 44474000 18154000 32666000 0 15135000 15927000 49247000 59688000 53139000 0 0 0 19685 37 19070 365738;365739;365740;365741;365742;365743;365744;365745;365746;365747;365748;365749;365750;365751;365752;365753;365754;365755;365756;365757;365758;365759;365760;365761;365762;365763;365764;365765 223288;223289;223290;223291;223292;223293;223294;223295;223296;223297;223298;223299;223300;223301 223291 13 TFSDDVEMMLEANR Unmodified 1656.7124 0.71235712 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 51.917 50.653 2;3 1.3038E-19 23910 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 212.28 210.52 465040000 67935000 65699000 57095000 7683700 6556800 6073700 27575000 30521000 25443000 0 0 0 26877000 22934000 16583000 0 0 0 30095000 33054000 35010000 1344400 2563400 1999300 19686 235 19071 365766;365767;365768;365769;365770;365771;365772;365773;365774;365775;365776;365777;365778;365779;365780;365781;365782;365783;365784;365785;365786;365787;365788;365789;365790;365791;365792;365793;365794;365795;365796;365797;365798;365799 223302;223303;223304;223305;223306;223307;223308;223309;223310;223311;223312;223313;223314;223315;223316;223317;223318;223319;223320 223319 19 TFSEAIISGEWK Unmodified 1366.6769 0.67688153 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 41.448 39.685 2;3 1.406E-08 19295 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.98 168.93 2977700000 282330000 268120000 231820000 2030000 1288000 1751800 362720000 361880000 339550000 2328800 1984100 2039600 174730000 163650000 143620000 0 0 0 208700000 227040000 202130000 0 0 0 19687 277 19072 365800;365801;365802;365803;365804;365805;365806;365807;365808;365809;365810;365811;365812;365813;365814;365815;365816;365817;365818;365819;365820;365821;365822;365823;365824;365825;365826;365827;365828;365829 223321;223322;223323;223324;223325;223326;223327;223328;223329;223330;223331;223332;223333;223334;223335;223336;223337;223338;223339;223340;223341;223342;223343;223344;223345;223346;223347;223348;223349;223350 223332 30 TFSIIKPNAVAK Unmodified 1287.7551 0.75507227 315 P0A763 ndk Nucleoside diphosphate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 23.902 23.071 2;3 3.0678E-09 10128 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 179.42 178.04 2913600000 533800000 525570000 469060000 2677700 2551900 2668300 108110000 130280000 104540000 0 0 0 66606000 67917000 85319000 0 0 0 257770000 274590000 282140000 0 0 0 19688 315 19073 365830;365831;365832;365833;365834;365835;365836;365837;365838;365839;365840;365841;365842;365843;365844;365845;365846;365847;365848;365849;365850;365851;365852;365853;365854;365855;365856;365857;365858;365859;365860;365861 223351;223352;223353;223354;223355;223356;223357;223358;223359;223360;223361;223362;223363;223364;223365;223366;223367;223368;223369;223370;223371;223372;223373;223374 223357 23 TFSLFGDK Unmodified 913.45453 0.45453316 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.459 35.618 2 0.0032013 17131 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.114 49.033 86562000 14673000 13592000 13543000 711610 621840 0 5681400 5606800 6670400 921300 701360 556860 2818200 2624800 2764700 0 0 0 5971400 5271200 3831700 0 0 0 19689 198 19074 365862;365863;365864;365865;365866;365867;365868;365869;365870;365871;365872;365873;365874;365875;365876;365877;365878 223375;223376;223377 223376 3 TFSNAIAEVR Unmodified 1106.572 0.57202253 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 25.985 24.591 2 1.1305E-06 8660 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 168.25 153.47 177210000 0 0 0 9639300 10464000 9752100 0 0 0 16395000 15511000 16344000 0 0 0 0 0 0 0 0 0 34089000 34134000 30885000 19690 215 19075 365879;365880;365881;365882;365883;365884;365885;365886;365887;365888 223378;223379;223380;223381;223382;223383;223384;223385;223386 223381 9 TFSPESEDYLK Unmodified 1314.598 0.59796251 830 P0AE22 aphA Class B acid phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 28.921 27.619 2 6.0983E-05 12811 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.3 122.69 582360000 0 0 65184000 0 0 0 59183000 63744000 63686000 0 0 0 63029000 62404000 53685000 0 0 0 48911000 55321000 47210000 0 0 0 19691 830 19076 365889;365890;365891;365892;365893;365894;365895;365896;365897;365898 223387;223388;223389;223390;223391;223392;223393;223394;223395;223396 223390 10 TFSPESEDYLKNPVFWEK Unmodified 2215.0474 0.047350708 830 P0AE22 aphA Class B acid phosphatase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.04 42.525 3 0.089918 20629 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 30.684 21.861 167650000 17716000 11942000 11975000 0 0 0 21190000 17505000 17288000 0 0 0 14554000 12943000 15129000 0 0 0 8281800 7762100 11364000 0 0 0 19692 830 19077 365899;365900;365901;365902;365903;365904;365905;365906;365907;365908;365909;365910 223397 223397 1 TFTAKPETVK Unmodified 1120.6128 0.61282471 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 12.239 12.862 2;3 1.0682E-17 3561 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 246.93 201.85 7835100000 552990000 1262300000 1251100000 14568000 14542000 12685000 350550000 322980000 323100000 32974000 32341000 22619000 531240000 429430000 520200000 20710000 20345000 17604000 702070000 652940000 651030000 31041000 30197000 35462000 19693 569 19078 365911;365912;365913;365914;365915;365916;365917;365918;365919;365920;365921;365922;365923;365924;365925;365926;365927;365928;365929;365930;365931;365932;365933;365934;365935;365936;365937;365938;365939;365940;365941;365942;365943;365944;365945;365946;365947;365948;365949;365950;365951;365952;365953;365954;365955;365956;365957;365958 223398;223399;223400;223401;223402;223403;223404;223405;223406;223407;223408;223409;223410;223411;223412;223413;223414;223415;223416;223417;223418;223419;223420;223421;223422;223423 223403 25 TFTAKPETVKR Unmodified 1276.7139 0.71393574 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 1 2 3 2 1 1 2 2 2 11.424 11.931 2;3 7.6422E-08 2540 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 149.23 143.75 934280000 0 24401000 18911000 32200000 26812000 21526000 0 8537400 0 97978000 93739000 73956000 0 4626600 3658300 114530000 78594000 75522000 13454000 9331100 0 74237000 83240000 79028000 19694 569 19079 365959;365960;365961;365962;365963;365964;365965;365966;365967;365968;365969;365970;365971;365972;365973;365974;365975;365976;365977;365978;365979;365980;365981;365982;365983;365984;365985;365986;365987;365988;365989;365990;365991;365992 223424;223425;223426;223427;223428;223429;223430;223431;223432;223433;223434;223435;223436;223437;223438;223439;223440;223441;223442;223443;223444;223445 223428 22 TFTDAAEVIGEAWESR Unmodified 1780.8268 0.82679325 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 51.859 50.585 2;3 8.0733E-31 24696 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 296.96 296.96 1338000000 96587000 102810000 91270000 0 0 0 107460000 96729000 95090000 940880 0 1727200 112880000 100740000 104410000 0 0 0 131760000 137690000 157900000 0 0 0 19695 60 19080 365993;365994;365995;365996;365997;365998;365999;366000;366001;366002;366003;366004;366005;366006;366007;366008;366009;366010;366011;366012;366013;366014;366015;366016;366017;366018 223446;223447;223448;223449;223450;223451;223452;223453;223454;223455;223456;223457;223458;223459;223460;223461;223462;223463;223464;223465;223466 223458 20 TFTEQEVCNICSNPR Unmodified 1853.8036 0.80363174 344 P0A7H6 recR Recombination protein RecR yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.537 28.216 2;3 1.3483E-15 11531 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 199.43 193.46 228260000 7288200 6934900 8655100 0 0 0 8557800 5127900 6711800 17164000 15684000 14112000 5009600 3151500 6160600 2840300 2648500 0 9960800 7926200 6639300 28446000 31507000 33737000 19696 344 19081 366019;366020;366021;366022;366023;366024;366025;366026;366027;366028;366029;366030;366031;366032;366033;366034;366035;366036;366037;366038 223467;223468;223469;223470;223471 223470 4 TFTGVLGGDAIAR Unmodified 1276.6776 0.67755023 41 P00811 ampC Beta-lactamase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 35.116 33.69 2 0.0011054 16023 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 70.942 59.79 56619000 5734200 0 6529800 0 0 0 0 6311000 4848800 0 0 0 4084700 5130700 4229300 0 0 0 7277600 6200000 6273000 0 0 0 19697 41 19082 366039;366040;366041;366042;366043;366044;366045;366046;366047;366048 223472;223473;223474;223475 223472 0 TFTTQETMTNAHSAR Unmodified 1694.7682 0.76823251 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 3 2 1 2 2 2 13.452 14.301 2;3 1.0389E-56 4512 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 307.55 297.55 4898100000 346780000 397390000 422740000 1402200 1695800 1399500 708050000 626480000 532700000 1394800 0 0 360720000 285310000 204580000 0 0 0 313460000 382460000 311590000 0 0 0 19698 277 19083 366049;366050;366051;366052;366053;366054;366055;366056;366057;366058;366059;366060;366061;366062;366063;366064;366065;366066;366067;366068;366069;366070;366071;366072;366073;366074;366075;366076 223476;223477;223478;223479;223480;223481;223482;223483;223484;223485;223486;223487;223488;223489;223490;223491;223492;223493;223494;223495;223496;223497;223498;223499;223500;223501;223502;223503;223504 223492 29 TFVAFDVVAR Unmodified 1123.6026 0.60259438 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.876 40.177 2 0.00015441 19973 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.47 82.6 481170000 25052000 32300000 30849000 0 0 0 38737000 42718000 38353000 0 0 0 40213000 36321000 42392000 0 0 0 50327000 54701000 49202000 0 0 0 19699 1188 19084 366077;366078;366079;366080;366081;366082;366083;366084;366085;366086;366087;366088 223505;223506;223507;223508;223509;223510;223511;223512;223513;223514;223515;223516;223517;223518;223519;223520 223506 14 TFVCVETAYASETQK Unmodified 1732.7978 0.7978013 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 1 1 2 1 31.002 29.622 2;3 2.1258E-35 13890 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 251.34 246.03 535870000 18838000 21156000 22111000 0 0 0 85435000 83364000 72863000 0 0 0 33938000 35568000 27303000 0 0 0 39354000 58800000 37141000 0 0 0 19700 1510 19085 366089;366090;366091;366092;366093;366094;366095;366096;366097;366098;366099;366100;366101;366102;366103;366104;366105;366106;366107;366108 223521;223522;223523;223524;223525;223526;223527;223528;223529;223530 223527 10 TFVDQEFAQIK Unmodified 1324.6663 0.66631685 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 36.412 35.737 2 0.064199 17554 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 47.187 44.257 348310000 109250000 109470000 99147000 0 0 0 0 0 0 0 0 0 0 0 0 11410000 9783000 9239200 0 0 0 0 0 0 19701 34 19086 366109;366110;366111;366112;366113;366114 223531 223531 0 TFWFDIR Unmodified 983.4865 0.48650199 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.236 47.871 2 0.0019296 23658 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 121.29 95.398 344860000 59749000 62436000 48849000 0 0 0 29544000 27973000 26442000 0 0 0 15599000 14056000 13454000 0 0 0 16029000 16497000 14234000 0 0 0 19702 218 19087 366115;366116;366117;366118;366119;366120;366121;366122;366123;366124;366125;366126 223532;223533;223534;223535;223536;223537;223538;223539;223540;223541;223542;223543;223544;223545;223546 223534 15 TGAALTLDGATFSSETTLNNGTNTIPFQAR Unmodified 3068.5051 0.50507176 87 P04128 fimA Type-1 fimbrial protein, A chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 50.674 49.193 3 1.3821E-42 19868 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 223.85 221.63 99721000 0 0 0 0 0 0 0 0 0 33892000 26973000 31046000 0 0 0 0 0 0 0 0 0 2025800 2964000 2820800 19703 87 19088 366127;366128;366129;366130;366131;366132 223547;223548;223549 223547 3 TGADFAVMSGGGIR Unmodified 1337.6398 0.63978452 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.277 31.837 2 8.7681E-11 15505 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 162 145.87 302580000 34641000 36082000 32131000 0 0 0 31535000 28957000 30353000 0 0 0 15799000 15017000 15177000 0 0 0 19983000 20766000 22136000 0 0 0 19704 154 19089 366133;366134;366135;366136;366137;366138;366139;366140;366141;366142;366143;366144 223550;223551;223552;223553;223554;223555 223550 2 TGAFHAAIAAGVPIIPVCVSTTSNK Unmodified 2481.305 0.30497915 1285 P26647 plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.63 42.975 3 3.5426E-05 20948 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 84.404 80.677 126470000 6735500 7034700 5775600 2448800 1452700 0 0 0 0 6888600 6480200 5134900 11324000 9662100 8170800 0 0 0 13681000 19228000 12730000 5224200 0 4501300 19705 1285 19090 366145;366146;366147;366148;366149;366150;366151;366152;366153;366154;366155;366156;366157;366158;366159;366160 223556;223557;223558;223559;223560;223561 223557 6 TGAGMMDCK Unmodified 969.37181 0.37180786 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.423 13.023 2 1.5976E-05 3671 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 158.56 141.86 12686000000 857260000 1020300000 780970000 0 0 2317200 1100400000 1104200000 999230000 6178300 5087000 5510000 1124700000 1015800000 977840000 0 5026600 6769400 1220800000 1186700000 1258500000 2872400 3571100 2096600 19706 267 19091 366161;366162;366163;366164;366165;366166;366167;366168;366169;366170;366171;366172;366173;366174;366175;366176;366177;366178;366179;366180;366181 223562;223563;223564;223565;223566;223567;223568;223569;223570;223571;223572;223573;223574;223575;223576;223577 223574 16 TGAGMMDCK Oxidation (M) 985.36672 0.36672248 267 P0A6P1 tsf Elongation factor Ts yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 10.267 11.078 2 0.00048437 2562 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.74 111.74 936230000 55585000 51730000 46607000 0 0 0 10130000 0 10659000 0 0 0 123820000 92740000 92089000 0 0 0 150570000 144470000 157830000 0 0 0 19707 267 19091 366182;366183;366184;366185;366186;366187;366188;366189;366190;366191;366192;366193;366194 223578;223579;223580;223581;223582;223583;223584;223585;223586;223587;223588;223589;223590 223586 122;123 13 TGAGMMDCKK Unmodified 1097.4668 0.46677088 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 1 2 2 1 2 1 10.723 11.402 2;3 0.0004329 2305 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 91.867 85.636 502460000 34930000 33173000 28219000 11330000 13038000 12162000 36461000 33830000 36303000 10493000 11096000 12294000 17050000 28042000 12996000 13045000 13277000 8993500 55981000 51077000 18159000 0 6421200 4084200 19708 267 19092 366195;366196;366197;366198;366199;366200;366201;366202;366203;366204;366205;366206;366207;366208;366209;366210;366211;366212;366213;366214;366215;366216;366217;366218;366219;366220;366221;366222;366223;366224;366225;366226;366227;366228;366229;366230;366231;366232 223591;223592;223593;223594;223595;223596;223597 223593 7 TGATGGFGSYVAFIPEK Unmodified 1700.841 0.84098675 41 P00811 ampC Beta-lactamase yes yes 0 0 0 By MS/MS 1 45.908 44.55 2 0.080212 21635 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 50.088 43.114 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19709 41 19093 366233 223598 223598 1 TGAVINVK Unmodified 800.4756 0.47560295 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.901 15.525 2 0.0015117 5148 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 108.24 60.064 2361200000 279490000 306220000 271910000 0 0 0 276830000 364580000 308500000 0 773960 0 4645200 0 0 0 0 909590 283710000 259840000 3813200 0 0 0 19710 299 19094 366234;366235;366236;366237;366238;366239;366240;366241;366242;366243;366244;366245 223599;223600;223601;223602 223601 4 TGAWSSLLDIIPSMAK Unmodified 1688.8807 0.88074307 717 P0ACB7 hemY Protein HemY yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.306 53.86 2 2.5705E-06 21660 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 99.531 92.871 114690000 0 5061600 3140500 3813400 0 2514500 16271000 0 15376000 7186100 0 6612000 5757000 7659900 6462900 0 0 0 8130900 9649200 8765300 4795800 0 3495000 19711 717 19095 366246;366247;366248;366249;366250;366251;366252;366253;366254;366255;366256;366257;366258;366259;366260;366261 223603;223604 223604 1 TGCDLLPETVGR Unmodified 1316.6395 0.63945017 258 P0A6L2 dapA 4-hydroxy-tetrahydrodipicolinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.079 29.644 2 1.3358E-11 14134 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 182.64 171.81 2591500000 219380000 201280000 171310000 1136600 795340 0 237300000 214990000 230960000 0 0 1113900 198840000 188370000 194170000 0 0 0 240210000 240150000 251520000 0 0 0 19712 258 19096 366262;366263;366264;366265;366266;366267;366268;366269;366270;366271;366272;366273;366274;366275;366276 223605;223606;223607;223608;223609;223610;223611;223612;223613;223614;223615;223616 223606 12 TGCVEAIASGR Unmodified 1119.5343 0.53425682 1567 P45425 nanK N-acetylmannosamine kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 16.303 17.182 2 0.001696 5705 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 77.379 70.555 51009000 0 11254000 9713100 0 0 0 0 0 0 0 0 0 7127900 4935100 3740700 0 0 0 4430900 5053000 4753600 0 0 0 19713 1567 19097 366277;366278;366279;366280;366281;366282;366283;366284 223617;223618 223618 2 TGDEMHSVMEAGPMLR Unmodified 1759.7692 0.76916049 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.938 30.598 2;3 2.4124E-39 14326 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 320.96 315.64 856200000 169530000 147330000 155010000 0 0 0 39269000 43017000 43568000 0 0 0 28668000 32497000 22533000 0 0 0 60403000 63178000 51194000 0 0 0 19714 1465 19098 366285;366286;366287;366288;366289;366290;366291;366292;366293;366294;366295;366296;366297;366298;366299;366300;366301;366302;366303;366304;366305;366306;366307;366308 223619;223620;223621;223622;223623;223624;223625;223626;223627;223628;223629;223630;223631;223632;223633 223628 15 TGDGCGLLLQKPDR Unmodified 1528.7668 0.76677595 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 1 1 1 2 2 2 2 2 2 1 21.157 21.413 2;3 4.3708E-26 8408 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 229.29 222.17 1325400000 273600000 246670000 212640000 1388700 1652700 1248600 106930000 93019000 57282000 1187000 0 1230600 61212000 47933000 44030000 0 0 0 58705000 58232000 57558000 0 880040 0 19715 218 19099 366309;366310;366311;366312;366313;366314;366315;366316;366317;366318;366319;366320;366321;366322;366323;366324;366325;366326;366327;366328;366329;366330;366331;366332;366333;366334;366335;366336;366337 223634;223635;223636;223637;223638;223639;223640;223641;223642;223643;223644;223645;223646;223647;223648;223649;223650;223651;223652;223653;223654;223655 223646 22 TGDIGLFR Unmodified 877.46577 0.46576654 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.305 28.911 2 6.6235E-07 13488 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 198.39 177.41 2260800000 159580000 165730000 159800000 2456000 2087700 2098500 201160000 198850000 191500000 8851900 7216700 6832500 151520000 161750000 138220000 2761700 2083400 2331600 225600000 230220000 230530000 2997600 3995000 2679700 19716 59 19100 366338;366339;366340;366341;366342;366343;366344;366345;366346;366347;366348;366349;366350;366351;366352;366353;366354;366355;366356;366357;366358;366359;366360;366361 223656;223657;223658;223659;223660;223661;223662;223663;223664;223665;223666;223667 223662 12 TGDILAEAALGLQR Unmodified 1426.778 0.77799256 81 P03813 ygeA Uncharacterized protein YgeA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 46.41 44.992 2 0.00013533 21919 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 103.22 75.478 85466000 26353000 16889000 0 0 0 0 0 0 6464900 0 0 0 0 8835400 11800000 0 0 0 0 15123000 0 0 0 0 19717 81 19101 366362;366363;366364;366365;366366;366367 223668;223669 223668 1 TGDIVEYLVK Unmodified 1135.6125 0.61249036 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.777 39.003 2 0.0002821 19342 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.71 107.6 2364400000 198190000 182020000 175710000 0 0 0 190290000 174420000 172260000 0 1676400 1451400 190770000 182120000 166500000 0 0 0 244300000 248690000 235980000 0 0 0 19718 1120 19102 366368;366369;366370;366371;366372;366373;366374;366375;366376;366377;366378;366379;366380;366381 223670;223671;223672;223673;223674;223675;223676;223677;223678;223679;223680;223681 223671 12 TGDKNNQYK Unmodified 1066.5043 0.5043369 77 P02943 lamB Maltoporin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 9.2107 9.3608 2;3 0.00064279 1541 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 111.95 107.81 36003000 0 0 0 0 0 0 0 0 0 4733800 4922500 4514100 0 0 0 2882400 1833800 2176000 0 0 0 4871900 5341400 4727400 19719 77 19103 366382;366383;366384;366385;366386;366387;366388;366389;366390;366391;366392;366393;366394;366395;366396;366397;366398 223682;223683;223684;223685;223686;223687;223688;223689;223690 223689 9 TGDKVELEGK Unmodified 1074.5557 0.55570376 291 P0A6Y1 ihfB Integration host factor subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.558 12.158 2 7.4293E-23 3170 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 250.76 227.33 960060000 100890000 137260000 141500000 3914500 3116700 0 65740000 54016000 50483000 24862000 21613000 25255000 44115000 33387000 35657000 56381000 25094000 33914000 34117000 28019000 27888000 0 6440000 6400800 19720 291 19104 366399;366400;366401;366402;366403;366404;366405;366406;366407;366408;366409;366410;366411;366412;366413;366414;366415;366416;366417;366418;366419;366420;366421 223691;223692;223693;223694;223695;223696;223697;223698;223699;223700;223701;223702;223703;223704;223705;223706;223707;223708;223709;223710;223711;223712 223698 22 TGDLFAYMHYGVTPDILTSAK Unmodified 2299.1195 0.11946979 1150 P18335 argD Acetylornithine/succinyldiaminopimelate aminotransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 51.472 50.303 3 0.0012494 24604 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 61.703 59.815 84892000 22439000 22978000 17477000 0 0 0 0 0 0 0 0 0 8267500 7506400 6225000 0 0 0 0 0 0 0 0 0 19721 1150 19105 366422;366423;366424;366425;366426;366427 223713 223713 1 TGDLIEIK Unmodified 887.4964 0.49639797 1531 P39358 yjhG Uncharacterized protein YjhG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.898 23.854 2 0.045214 7837 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 60.788 40.233 51120000 6372400 5495700 3709500 0 0 0 2560700 0 2827700 4355800 4177700 0 0 2266800 0 11637000 0 0 2942800 2900500 1874300 0 0 0 19722 1531 19106 366428;366429;366430;366431;366432;366433;366434;366435;366436;366437;366438;366439 223714 223714 1 TGDLYSPWPEEANR Unmodified 1633.7372 0.73724996 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.389 34.832 2 9.3369E-10 16745 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 157.38 154.86 212280000 14580000 13466000 11880000 0 0 0 16551000 18907000 18194000 0 0 0 16430000 16014000 15780000 0 0 0 20957000 22991000 26524000 0 0 0 19723 1306 19107 366440;366441;366442;366443;366444;366445;366446;366447;366448;366449;366450;366451 223715;223716;223717;223718;223719;223720;223721;223722;223723;223724 223719 10 TGDNTLIHSHGINR Unmodified 1533.7648 0.76480211 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 12.407 13.33 2;3 1.0163E-10 3905 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 159.09 145.32 50834000 0 0 0 0 871020 0 0 0 0 0 0 0 0 0 2010000 0 0 0 20049000 14348000 13555000 0 0 0 19724 1739 19108 366452;366453;366454;366455;366456;366457;366458;366459 223725;223726;223727;223728 223727 4 TGDTISGK Unmodified 777.38685 0.38684752 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 2 2 1 2 1 2 2 2 1 2 1 2 2 2 1 3 2 2 2 2 9.9458 10.424 2 0.0010062 2420 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.91 63.881 2034800000 21184000 88877000 79623000 0 0 0 6217200 4556500 4598200 119290000 93733000 92763000 8564000 9131500 5792100 273730000 412740000 302690000 13688000 21526000 24306000 156090000 135940000 159750000 19725 982 19109 366460;366461;366462;366463;366464;366465;366466;366467;366468;366469;366470;366471;366472;366473;366474;366475;366476;366477;366478;366479;366480;366481;366482;366483;366484;366485;366486;366487;366488;366489;366490;366491;366492;366493;366494;366495;366496 223729;223730;223731;223732;223733;223734;223735 223732 3 TGDTVNDEDISNTIR Unmodified 1648.754 0.75402223 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.952 23.852 2 1.8649E-35 10824 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 253.79 238.53 280190000 21164000 23691000 21643000 1901700 2255200 2314700 13667000 13600000 15585000 6962900 6792500 6668100 17074000 16012000 13671000 0 0 0 28304000 29679000 25199000 5469100 4502400 4029600 19726 486 19110 366497;366498;366499;366500;366501;366502;366503;366504;366505;366506;366507;366508;366509;366510;366511;366512;366513;366514;366515;366516;366517 223736;223737;223738;223739;223740;223741;223742;223743;223744;223745;223746;223747;223748;223749;223750;223751;223752;223753 223739 17 TGDVDGKPAAGGMLLQVMPAQNAQQDDFDHLATLTETIK Unmodified 4095.9881 0.98814463 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.231 49.979 4 5.5208E-24 24533 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 156.72 155.46 1503100000 117490000 110650000 90680000 0 0 0 85734000 82143000 75994000 0 0 0 138790000 109210000 128520000 0 0 0 178440000 205880000 179560000 0 0 0 19727 292 19111 366518;366519;366520;366521;366522;366523;366524;366525;366526;366527;366528;366529 223754;223755;223756;223757;223758;223759;223760;223761 223757 8 TGDVIHGLPLEEVAGGK Unmodified 1690.889 0.88899957 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 1 1 1 1 1 1 36.54 34.997 2;3 8.9182E-19 16744 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.48 182.16 693180000 208680000 186230000 172330000 0 0 0 10077000 9243500 13026000 0 0 0 12802000 11661000 12853000 0 0 0 19815000 15279000 21186000 0 0 0 19728 1112 19112 366530;366531;366532;366533;366534;366535;366536;366537;366538;366539;366540;366541;366542;366543;366544;366545 223762;223763;223764;223765;223766;223767;223768 223764 6 TGDVKQPNDPGEITNEVTPIK Unmodified 2251.1332 0.1332056 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 27.667 26.012 3 3.587E-05 9668 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 84.166 81.113 27894000 0 0 0 2183900 1791200 4193600 0 0 0 5183200 4830000 4603800 0 0 0 0 0 0 0 0 0 2525400 2583000 0 19729 1115 19113 366546;366547;366548;366549;366550;366551;366552;366553 223769;223770;223771;223772;223773 223770 5 TGEDIPITAR Unmodified 1071.556 0.55603811 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.424 21.5 2 8.3536E-09 8676 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 186.16 174.65 3263900000 392400000 416590000 328760000 10443000 10760000 10302000 240520000 219310000 206990000 55411000 54753000 53355000 171410000 149210000 140320000 124390000 93264000 88568000 133290000 154110000 153170000 20264000 19280000 16987000 19730 290 19114 366554;366555;366556;366557;366558;366559;366560;366561;366562;366563;366564;366565;366566;366567;366568;366569;366570;366571;366572;366573;366574;366575;366576;366577 223774;223775;223776;223777;223778;223779;223780;223781;223782;223783 223779 9 TGEEDDAAI Unmodified 919.37707 0.3770707 567 P0A9Z1 glnB Nitrogen regulatory protein P-II 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.088 20.503 2 0.0047712 7757 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 76.847 76.847 116600000 15705000 11667000 7282700 0 0 0 8476000 9979600 8799200 0 0 0 10267000 7787800 8774500 0 0 0 7577700 9531300 10748000 0 0 0 19731 567 19115 366578;366579;366580;366581;366582;366583;366584;366585;366586;366587;366588;366589 223784;223785;223786 223784 3 TGEGVDVLR Unmodified 944.49271 0.49270958 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 20.543 20.95 2 0.00021441 7814 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 125.31 95.976 286470000 34277000 0 24974000 0 0 0 26137000 24648000 28489000 0 0 0 21735000 24240000 22299000 0 0 0 24740000 28285000 26644000 0 0 0 19732 1256 19116 366590;366591;366592;366593;366594;366595;366596;366597;366598;366599;366600 223787;223788;223789;223790;223791;223792;223793;223794 223794 6 TGELSIHCTELR Unmodified 1414.6875 0.68746299 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 20.401 20.813 2;3 8.7385E-17 8117 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 208.6 178.35 7233200000 470530000 494040000 475770000 486390 1524500 1811900 591410000 622630000 584570000 0 0 0 581260000 547510000 488850000 0 0 0 818670000 739320000 814820000 0 0 0 19733 448 19117 366601;366602;366603;366604;366605;366606;366607;366608;366609;366610;366611;366612;366613;366614;366615;366616;366617;366618;366619;366620;366621;366622;366623;366624;366625;366626;366627 223795;223796;223797;223798;223799;223800;223801;223802;223803;223804;223805;223806;223807;223808;223809;223810;223811;223812;223813;223814;223815;223816;223817;223818 223808 24 TGELTRTEVDELTR Unmodified 1618.8162 0.81622856 613 P0AAT9 ybeL Uncharacterized protein YbeL yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 24.379 23.279 3 4.1037E-05 7459 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 83.729 82.741 24334000 0 0 0 6795200 7690800 6745300 0 0 0 0 1648500 916540 0 0 0 0 0 0 0 0 0 0 0 537120 19734 613 19118 366628;366629;366630;366631;366632;366633 223819;223820 223820 2 TGELYAYMHYGVTPDLLTTAK Unmodified 2343.1457 0.14568454 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 47.51 46.171 2;3 3.2161E-43 22475 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 291.54 285.25 715900000 232300000 259710000 223890000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19735 1919 19119 366634;366635;366636;366637;366638;366639 223821;223822;223823;223824;223825;223826 223826 6 TGEMGYPSALTAPVWGFYDVSFK Unmodified 2522.1828 0.18279833 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 55.322 53.916 3 0.05421 26862 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 36.079 35.025 52926000 20780000 13794000 18353000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19736 1888 19120 366640;366641;366642 223827 223827 1 TGEQFER Unmodified 865.393 0.39299553 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 12.419 12.564 2 3.5279E-05 2907 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 178.65 161.72 439180000 0 0 0 0 0 0 0 0 0 31415000 29575000 28093000 0 0 0 88026000 71767000 81309000 0 0 0 35760000 33553000 39685000 19737 463 19121 366643;366644;366645;366646;366647;366648;366649;366650;366651 223828;223829;223830;223831;223832;223833;223834;223835;223836 223831 9 TGEQFERPVTVGYMYMLK 2 Oxidation (M) 2180.0282 0.028211945 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 2 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 32.281 31.015 3 6.022E-07 10823 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 103.66 103.45 164100000 0 0 0 0 0 0 0 0 0 0 9654300 10885000 0 0 0 33846000 18576000 23500000 0 0 0 24706000 22149000 20789000 19738 463 19122 366652;366653;366654;366655;366656;366657;366658;366659 223837;223838;223839;223840;223841;223842;223843;223844 223837 279;280 8 TGEQFERPVTVGYMYMLK Oxidation (M) 2164.0333 0.033297323 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 7 9 7 1 2 10 10 9 1 2 1 9 9 9 38.897 37.439 2;3 9.0305E-15 15112 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 155.79 155.45 3159400000 0 2105100 1912200 0 847990 970550 0 0 3153700 242460000 226170000 203380000 0 2897300 2939400 630900000 545690000 447800000 5029400 8967700 4696200 291690000 267460000 270310000 19739 463 19122 366660;366661;366662;366663;366664;366665;366666;366667;366668;366669;366670;366671;366672;366673;366674;366675;366676;366677;366678;366679;366680;366681;366682;366683;366684;366685;366686;366687;366688;366689;366690;366691;366692;366693;366694;366695;366696;366697;366698;366699;366700;366701;366702;366703;366704;366705;366706;366707;366708;366709;366710;366711;366712;366713;366714;366715;366716;366717;366718;366719;366720;366721;366722;366723;366724;366725;366726;366727;366728;366729;366730;366731;366732;366733;366734;366735;366736;366737;366738;366739;366740;366741;366742;366743;366744;366745;366746;366747;366748;366749;366750;366751 223845;223846;223847;223848;223849;223850;223851;223852;223853;223854;223855;223856;223857;223858;223859;223860;223861;223862;223863;223864;223865;223866;223867;223868;223869;223870;223871;223872;223873;223874;223875;223876;223877;223878;223879;223880;223881;223882;223883;223884;223885;223886;223887;223888;223889;223890;223891;223892;223893;223894;223895;223896;223897;223898;223899;223900;223901;223902;223903;223904;223905;223906;223907;223908;223909;223910;223911;223912;223913;223914;223915;223916;223917;223918;223919;223920;223921;223922;223923;223924 223884 279;280 80 TGEQFERPVTVGYMYMLK Unmodified 2148.0384 0.038382701 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 2 2 2 2 2 3 3 5 2 2 2 6 6 5 2 2 2 4 6 3 42.686 41.209 2;3;4 2.7112E-57 14175 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 294 294 44692000000 101590000 111740000 100230000 25202000 25592000 25246000 74786000 68600000 69852000 2250000000 2319700000 2212000000 72279000 70159000 68886000 10138000000 8582100000 8815500000 116710000 110330000 115490000 3137600000 3218500000 2862800000 19740 463 19122 366752;366753;366754;366755;366756;366757;366758;366759;366760;366761;366762;366763;366764;366765;366766;366767;366768;366769;366770;366771;366772;366773;366774;366775;366776;366777;366778;366779;366780;366781;366782;366783;366784;366785;366786;366787;366788;366789;366790;366791;366792;366793;366794;366795;366796;366797;366798;366799;366800;366801;366802;366803;366804;366805;366806;366807;366808;366809;366810;366811;366812;366813;366814;366815;366816;366817;366818;366819;366820;366821;366822;366823;366824 223925;223926;223927;223928;223929;223930;223931;223932;223933;223934;223935;223936;223937;223938;223939;223940;223941;223942;223943;223944;223945;223946;223947;223948;223949;223950;223951;223952;223953;223954;223955;223956;223957;223958;223959;223960;223961;223962;223963;223964;223965;223966;223967;223968;223969;223970;223971;223972;223973;223974;223975;223976;223977;223978;223979;223980;223981;223982;223983;223984;223985;223986;223987;223988;223989;223990;223991;223992;223993 223944 69 TGEVIGATQLTEGELIVEAGGR Unmodified 2199.1383 0.13829098 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.746 47.578 2 0.13256 22304 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 55.975 51.345 43192000 0 0 0 0 0 0 5966800 0 0 3748700 2637400 2227300 3029300 0 3407000 4860900 2129500 0 5402200 5505600 4277600 0 0 0 19741 1916 19123 366825;366826;366827;366828;366829;366830;366831;366832;366833;366834;366835 223994 223994 0 TGEVPADVAAQAR Unmodified 1283.647 0.64697839 920 P0AF93 ridA 2-iminobutanoate/2-iminopropanoate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 3 3 2 1 1 2 2 2 3 2 3 19.285 19.769 2;3 4.2982E-06 7431 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.66 99.34 15499000000 2510600000 2199100000 2188200000 5107400 4798100 6167200 1535800000 1520900000 1471000000 1467000 0 940430 458660000 470810000 464180000 0 0 0 856950000 918230000 886250000 0 0 0 19742 920 19124 366836;366837;366838;366839;366840;366841;366842;366843;366844;366845;366846;366847;366848;366849;366850;366851;366852;366853;366854;366855;366856;366857;366858;366859;366860;366861;366862;366863;366864;366865;366866;366867;366868 223995;223996;223997;223998;223999;224000;224001;224002;224003;224004;224005;224006;224007;224008;224009;224010;224011;224012;224013;224014;224015;224016;224017;224018;224019;224020;224021;224022;224023 224016 29 TGFAYADQISLLALEQSAQAAR Unmodified 2323.1808 0.1808245 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.24 52.792 3 0.002542 26214 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 56.365 49.519 226280000 18560000 21979000 20414000 0 0 0 13781000 17365000 15112000 0 0 0 21826000 14630000 16017000 0 0 0 22629000 22836000 21136000 0 0 0 19743 1019 19125 366869;366870;366871;366872;366873;366874;366875;366876;366877;366878;366879;366880 224024 224024 1 TGFESADYPQGR Unmodified 1326.584 0.58404378 134 P06961 cca Multifunctional CCA protein;CCA-adding enzyme;2'-nucleotidase;2',3'-cyclic phosphodiesterase;Phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.897 20.387 2 1.6122E-05 7621 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 125.48 122.5 79856000 8523900 7806000 9412100 0 0 0 7209500 5228800 6154900 0 0 0 3890400 4593800 3973800 0 0 0 6934500 8008500 8119700 0 0 0 19744 134 19126 366881;366882;366883;366884;366885;366886;366887;366888;366889;366890;366891;366892 224025;224026;224027;224028;224029;224030;224031;224032 224030 8 TGFGAHLFNDWR Unmodified 1419.6684 0.66838253 1337 P30126 leuD 3-isopropylmalate dehydratase small subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 36.804 35.182 3 0.00026034 17013 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.226 80.439 137950000 36189000 37325000 30751000 0 0 0 3176400 0 6046400 0 0 0 3609700 4257300 3208500 0 0 0 4009800 5096400 4280200 0 0 0 19745 1337 19127 366893;366894;366895;366896;366897;366898;366899;366900;366901;366902;366903 224033;224034;224035 224033 3 TGFHMLHTLFQTSLQFPQIQR Unmodified 2529.2951 0.29508317 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 1 2 2 2 49.153 47.839 3;4 6.9817E-22 23678 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 169.28 166.35 694320000 7813500 14647000 9925200 2555300 3887700 3518700 76309000 66132000 62957000 51971000 46739000 59531000 44574000 38184000 61780000 9949200 15472000 11410000 19321000 27821000 19180000 14300000 14433000 11913000 19746 25 19128 366904;366905;366906;366907;366908;366909;366910;366911;366912;366913;366914;366915;366916;366917;366918;366919;366920;366921;366922;366923;366924;366925;366926;366927;366928;366929;366930;366931;366932;366933;366934;366935;366936;366937;366938;366939;366940;366941;366942;366943;366944 224036;224037;224038;224039;224040;224041;224042;224043;224044;224045;224046;224047;224048;224049;224050;224051;224052;224053;224054;224055;224056;224057;224058;224059;224060;224061 224048 26 TGFISHFVIEGEAMAQQLR Unmodified 2133.0677 0.067708995 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.509 50.402 3 4.8952E-18 20289 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 173.51 159.88 151980000 0 0 0 0 1625000 0 12537000 9963700 0 14891000 12464000 15241000 8134700 8511800 5158700 4039100 3100100 3617900 8663400 9559200 13210000 6740000 8167600 6352900 19747 143 19129 366945;366946;366947;366948;366949;366950;366951;366952;366953;366954;366955;366956;366957;366958;366959;366960;366961;366962 224062;224063;224064;224065;224066;224067;224068;224069 224065 8 TGFNDSLLDIR Unmodified 1249.6303 0.63026569 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.163 40.612 2 2.3026E-10 20154 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 188.87 166.79 8275000000 684460000 676630000 621000000 20158000 18575000 16378000 1189000000 0 1195100000 0 63956000 51555000 648580000 580280000 547390000 19061000 19042000 16027000 576000000 601000000 654990000 24926000 25397000 25515000 19748 1046 19130 366963;366964;366965;366966;366967;366968;366969;366970;366971;366972;366973;366974;366975;366976;366977;366978;366979;366980;366981;366982;366983;366984;366985;366986 224070;224071;224072;224073;224074;224075;224076;224077;224078;224079;224080;224081;224082;224083;224084;224085;224086;224087;224088;224089;224090;224091;224092;224093 224077 24 TGFYMSLIGTPDEQR Unmodified 1713.8032 0.80322103 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 3 1 1 1 2 2 2 2 2 2 46.755 45.271 2;3 1.7193E-11 22356 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 219.33 217.01 3205900000 489540000 496570000 418280000 3605100 5270500 3996800 240900000 227210000 253380000 2639500 3452900 2111700 162960000 153920000 155740000 0 0 0 194210000 201240000 190890000 0 0 0 19749 1577 19131 366987;366988;366989;366990;366991;366992;366993;366994;366995;366996;366997;366998;366999;367000;367001;367002;367003;367004;367005;367006;367007;367008;367009;367010;367011;367012;367013;367014;367015;367016;367017;367018 224094;224095;224096;224097;224098;224099;224100;224101;224102;224103;224104;224105;224106;224107;224108;224109;224110;224111;224112;224113;224114;224115;224116;224117;224118;224119 224096 23 TGGAHAAVVTAVAK Unmodified 1251.6935 0.69353465 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 12.435 13.263 2 1.3656E-19 3935 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 211.63 191.85 190020000 30644000 29020000 29121000 0 0 0 19125000 0 23993000 0 0 0 0 5958600 3738500 0 0 0 15576000 17127000 15713000 0 0 0 19750 1541 19132 367019;367020;367021;367022;367023;367024;367025;367026;367027;367028 224120;224121;224122;224123 224121 4 TGGDAPDQTTTIVR Unmodified 1430.7001 0.70013617 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.569 18.008 2 5.4525E-35 6688 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 257.42 251.64 5381900000 246610000 272340000 229170000 2406000 2134800 2035700 635240000 618060000 608230000 31409000 28423000 27297000 501410000 436700000 444830000 3102100 1994100 2127500 468470000 430410000 379640000 2989100 3330200 3540200 19751 539 19133 367029;367030;367031;367032;367033;367034;367035;367036;367037;367038;367039;367040;367041;367042;367043;367044;367045;367046;367047;367048;367049;367050;367051;367052 224124;224125;224126;224127;224128;224129;224130;224131;224132;224133;224134;224135;224136;224137;224138;224139;224140;224141;224142;224143;224144 224129 21 TGGDVGPALGAAR Unmodified 1140.5887 0.58873523 199 P09099 xylB Xylulose kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 18.017 18.615 2 0.0008313 7115 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 75.509 56.415 52091000 5279400 6360000 5735700 0 0 0 8710300 10064000 4867000 0 0 0 2209600 3245400 2736300 0 0 0 0 2883600 0 0 0 0 19752 199 19134 367053;367054;367055;367056;367057;367058;367059;367060;367061;367062 224145 224145 0 TGGELDWENLAAEK Unmodified 1531.7155 0.71545188 843 P0AEA8 cysG Siroheme synthase;Uroporphyrinogen-III C-methyltransferase;Precorrin-2 dehydrogenase;Sirohydrochlorin ferrochelatase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 39.818 38.075 2 0.00015347 18374 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 85.924 76.127 93185000 9270800 8074000 10577000 0 0 0 10731000 8369100 11651000 0 0 0 0 0 0 0 0 0 11077000 11220000 12214000 0 0 0 19753 843 19135 367063;367064;367065;367066;367067;367068;367069;367070;367071;367072 224146;224147;224148;224149;224150;224151 224150 5 TGGILAAPVR Unmodified 953.56581 0.56581494 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.649 22.89 2 4.0202E-05 7921 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 119.29 65.323 142440000 10194000 9124900 8858100 2216800 1791200 1218500 12186000 13152000 11532000 0 0 0 9516600 9601300 11186000 0 0 0 13352000 15243000 13264000 0 0 0 19754 1964 19136 367073;367074;367075;367076;367077;367078;367079;367080;367081;367082;367083;367084;367085;367086;367087;367088;367089;367090 224152;224153;224154;224155 224152 4 TGGLTEALALATEAR Unmodified 1472.7835 0.78347187 1596 P51981 ycjG L-Ala-D/L-Glu epimerase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 46.229 44.739 2;3 2.0983E-07 22217 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 97.203 89.027 201830000 24119000 24028000 22393000 0 0 0 25906000 19198000 20363000 0 0 0 11992000 8795800 11566000 0 0 0 10638000 11446000 11382000 0 0 0 19755 1596 19137 367091;367092;367093;367094;367095;367096;367097;367098;367099;367100;367101;367102;367103;367104;367105;367106;367107;367108;367109;367110;367111;367112;367113;367114 224156;224157;224158 224156 3 TGGYDGR Unmodified 724.31402 0.31401693 196 P09029 purK N5-carboxyaminoimidazole ribonucleotide synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 7.3361 8.2382 2 0.0067903 1841 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.006 94.006 9158500 0 0 4653500 0 0 0 0 0 0 0 0 0 1397800 1000500 0 0 0 0 988480 1118200 0 0 0 0 19756 196 19138 367115;367116;367117;367118;367119 224159 224159 1 TGHALLHTLYQQNLK Unmodified 1735.937 0.93695282 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 2 2 2 1 3 3 3 3 3 2 2 1 3 3 3 3 3 3 20.914 21.094 2;3;4 1.7096E-56 7841 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 364.12 355.6 2061300000 124090000 108840000 114510000 51848000 45578000 54173000 58347000 51860000 60625000 4565100 37381000 37383000 130890000 119610000 121270000 10025000 14342000 5624200 248220000 259190000 232310000 51081000 66424000 53146000 19757 698 19139 367120;367121;367122;367123;367124;367125;367126;367127;367128;367129;367130;367131;367132;367133;367134;367135;367136;367137;367138;367139;367140;367141;367142;367143;367144;367145;367146;367147;367148;367149;367150;367151;367152;367153;367154;367155;367156;367157;367158;367159;367160;367161;367162;367163;367164;367165;367166;367167;367168;367169;367170;367171;367172;367173;367174;367175;367176;367177;367178;367179;367180;367181;367182 224160;224161;224162;224163;224164;224165;224166;224167;224168;224169;224170;224171;224172;224173;224174;224175;224176;224177;224178;224179;224180;224181;224182;224183;224184;224185;224186;224187;224188;224189;224190;224191;224192;224193;224194;224195;224196;224197;224198;224199;224200;224201;224202;224203;224204;224205;224206;224207;224208;224209;224210;224211;224212;224213;224214 224214 55 TGHLLSQPFNSSTPVLYYNK Unmodified 2265.143 0.14298243 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 2 3 2 1 1 1 2 2 2 1 1 1 36.855 35.287 2;3 4.1351E-68 16908 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 384.53 381.62 12862000000 137500000 110200000 110720000 4794700 4810400 4369700 964800000 1045500000 912410000 0 0 1920300 1012000000 1037500000 1067900000 3008200 3590200 3240500 2095200000 2018300000 2313800000 3844600 2394700 3977500 19758 993 19140 367183;367184;367185;367186;367187;367188;367189;367190;367191;367192;367193;367194;367195;367196;367197;367198;367199;367200;367201;367202;367203;367204;367205;367206;367207;367208;367209;367210;367211;367212;367213;367214;367215;367216;367217 224215;224216;224217;224218;224219;224220;224221;224222;224223;224224;224225;224226;224227;224228;224229;224230;224231;224232;224233;224234;224235;224236;224237;224238;224239;224240;224241;224242;224243 224229 29 TGHLVQR Unmodified 809.45079 0.45078518 1579 P45771 yrdD Uncharacterized protein YrdD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 9.856 10.627 2 0.0063618 2351 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 95.793 77.108 22097000 6628200 8547900 3496300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1838000 1586600 0 0 0 19759 1579 19141 367218;367219;367220;367221;367222 224244;224245;224246 224245 3 TGHWDNYK Unmodified 1019.4461 0.44609374 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.774 12.606 2 2.8237E-05 3471 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 175.38 175.38 588130000 30710000 42039000 39355000 0 0 0 40814000 45539000 40261000 0 0 0 61621000 56606000 58313000 0 0 0 64668000 49314000 58889000 0 0 0 19760 445 19142 367223;367224;367225;367226;367227;367228;367229;367230;367231;367232;367233;367234 224247;224248;224249;224250;224251;224252;224253;224254;224255;224256;224257;224258 224250 11 TGIAEHIK Unmodified 867.48142 0.48141661 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.732 12.464 2 0.0028449 3328 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.093 90.454 1250800000 60658000 61134000 51788000 0 0 0 330630000 277600000 336570000 1892200 1220400 0 16263000 14153000 16255000 0 0 0 26098000 27609000 28937000 0 0 0 19761 1265 19143 367235;367236;367237;367238;367239;367240;367241;367242;367243;367244;367245;367246;367247;367248 224259;224260;224261;224262;224263;224264;224265;224266;224267 224259 9 TGIAFDDSPVPAQNR Unmodified 1586.7689 0.76888444 1056 P10384 fadL Long-chain fatty acid transport protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 31.91 29.748 2 0.00024922 11415 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 77.64 71.669 9703700 0 0 0 0 0 0 0 0 0 2193600 1882200 1770800 0 0 0 0 0 0 0 0 0 1870600 0 1986500 19762 1056 19144 367249;367250;367251;367252;367253 224268 224268 1 TGIAHILFEK Unmodified 1127.6339 0.63389451 1404 P33015 yeeE UPF0394 inner membrane protein YeeE yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 1 1 28.951 27.746 2;3 0.010473 13262 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 64.191 54.162 58421000 0 3224600 0 0 0 0 2534600 3333800 0 0 0 0 10777000 12053000 12470000 0 0 0 5666400 4275000 4085500 0 0 0 19763 1404 19145 367254;367255;367256;367257;367258;367259;367260;367261;367262;367263;367264;367265 224269;224270;224271 224269 2 TGIEINPQAIFDIQIK Unmodified 1798.9829 0.98289996 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.678 53.468 2 5.7645E-10 21461 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 140.16 126.23 814750000 0 0 0 0 0 0 71650000 69166000 69181000 37642000 37610000 39433000 57162000 51704000 46642000 21915000 25182000 33121000 80727000 73305000 67907000 12522000 10017000 9867200 19764 30 19146 367266;367267;367268;367269;367270;367271;367272;367273;367274;367275;367276;367277;367278;367279;367280;367281;367282;367283 224272;224273;224274;224275;224276;224277;224278;224279;224280;224281 224275 10 TGILLANLGTPDAPTPEAVKR Unmodified 2133.1794 0.17936793 1223 P23871 hemH Ferrochelatase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 39.488 37.591 3 0.00014228 14999 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 67.396 66.328 43288000 0 0 0 3054800 2648100 2226100 0 2365200 2528900 8070600 5062700 5648300 0 0 0 0 929370 0 0 2223900 0 3265100 3088300 2176700 19765 1223 19147 367284;367285;367286;367287;367288;367289;367290;367291;367292;367293;367294;367295;367296 224282;224283;224284 224283 3 TGIPDADK Unmodified 815.4025 0.40249759 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 12.794 13.217 2 0.014644 3830 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 71.491 59.107 429620000 0 220050000 202840000 0 0 0 0 0 0 2349900 2264400 2124600 0 0 0 0 0 0 0 0 0 0 0 0 19766 783 19148 367297;367298;367299;367300;367301 224285;224286 224285 2 TGIPDADKVNIQIADGK Unmodified 1753.921 0.92102798 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 30.276 28.856 2;3 6.7845E-19 13643 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 217.19 208.3 9121000000 1616500000 1704800000 1398400000 308800000 281520000 275890000 636200000 615320000 598820000 250400000 227110000 208340000 98535000 123910000 116060000 31694000 23973000 24801000 178420000 206390000 181330000 3625900 5183500 4954900 19767 783 19149 367302;367303;367304;367305;367306;367307;367308;367309;367310;367311;367312;367313;367314;367315;367316;367317;367318;367319;367320;367321;367322;367323;367324;367325;367326;367327;367328;367329;367330;367331;367332;367333;367334;367335;367336;367337;367338;367339;367340;367341;367342;367343;367344 224287;224288;224289;224290;224291;224292;224293;224294;224295;224296;224297;224298;224299;224300;224301;224302;224303;224304;224305;224306;224307;224308;224309;224310;224311;224312;224313;224314;224315;224316;224317;224318;224319;224320;224321;224322;224323;224324;224325;224326 224301 40 TGISAAFLGNTAEQVIDHLR Unmodified 2112.0964 0.096366586 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.65 52.421 3 2.0144E-31 24621 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 225.01 217.3 2439900000 222220000 198320000 199090000 9078100 8746200 11328000 328900000 329190000 268490000 14818000 12803000 12777000 174990000 178200000 135350000 10527000 8144400 20330000 90003000 103050000 100540000 0 3013600 0 19768 585 19150 367345;367346;367347;367348;367349;367350;367351;367352;367353;367354;367355;367356;367357;367358;367359;367360;367361;367362;367363;367364;367365;367366 224327;224328;224329;224330;224331;224332;224333;224334;224335;224336;224337;224338;224339;224340;224341;224342;224343;224344;224345 224344 19 TGIVHYDKDVCTGCR Unmodified 1779.8032 0.80323781 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 3 3 3 3 3 3 3 3 1 2 3 3 1 2 13.842 14.457 2;3;4 2.4315E-06 3828 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 87.148 86.834 393390000 0 0 0 0 0 0 49055000 51355000 42805000 24058000 16631000 19186000 36065000 33902000 28735000 0 0 2241200 24727000 29979000 24044000 2912600 0 7689300 19769 600 19151 367367;367368;367369;367370;367371;367372;367373;367374;367375;367376;367377;367378;367379;367380;367381;367382;367383;367384;367385;367386;367387;367388;367389;367390;367391;367392;367393;367394;367395;367396;367397;367398;367399;367400;367401;367402;367403;367404 224346;224347;224348;224349;224350;224351;224352;224353;224354;224355;224356;224357;224358;224359 224349 12 TGKPDYVTDSAASATAWSTGVK Unmodified 2212.0648 0.064791686 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 2 1 1 2 2 2 1 2 2 2 1 1 1 29.819 28.382 2;3 1.2025E-52 13190 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 321.92 319.9 3003500000 0 0 0 3522200 3385300 3257700 246080000 216750000 220460000 0 3670100 4046500 370420000 370570000 338300000 4737300 0 0 409230000 372230000 423580000 3218700 5954800 4061000 19770 38 19152 367405;367406;367407;367408;367409;367410;367411;367412;367413;367414;367415;367416;367417;367418;367419;367420;367421;367422;367423;367424;367425;367426;367427;367428;367429;367430;367431 224360;224361;224362;224363;224364;224365;224366;224367;224368;224369;224370;224371;224372;224373;224374;224375;224376;224377 224369 18 TGKPIFYTSADSVFQIACHEETFGLDK Unmodified 3060.4539 0.45388781 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.062 46.675 3;4 5.143E-53 23212 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 234.95 234.86 3948900000 324480000 317370000 289810000 0 0 0 496640000 428870000 468220000 0 0 0 246210000 287130000 221040000 0 0 0 279840000 303990000 285310000 0 0 0 19771 256 19153 367432;367433;367434;367435;367436;367437;367438;367439;367440;367441;367442;367443;367444;367445;367446;367447;367448;367449;367450;367451;367452;367453;367454;367455 224378;224379;224380;224381;224382;224383;224384;224385;224386;224387;224388;224389;224390;224391;224392;224393;224394;224395;224396;224397;224398;224399;224400;224401;224402;224403 224379 26 TGKYDAVIALGTVIR Unmodified 1575.8984 0.89844205 1640 P61714 ribE 6,7-dimethyl-8-ribityllumazine synthase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.711 37.847 3 5.5684E-07 15142 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 116.58 115.99 144790000 6677100 8114000 4718600 3417500 3699300 3517300 14446000 10094000 9444300 6601100 7457500 6850000 7130100 6645700 5577100 0 0 0 11368000 11117000 10675000 2647400 2123700 2471100 19772 1640 19154 367456;367457;367458;367459;367460;367461;367462;367463;367464;367465;367466;367467;367468;367469;367470;367471;367472;367473;367474;367475;367476 224404;224405;224406;224407;224408;224409;224410;224411;224412;224413;224414 224405 11 TGLANSSDFLR Unmodified 1179.5884 0.58840088 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 30.128 28.576 2 0.0011905 9747 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 96.342 84.295 33455000 0 0 0 12687000 9607300 11161000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19773 114 19155 367477;367478;367479 224415;224416 224416 0 TGLDTLK Unmodified 746.41742 0.41741937 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.732 17.49 2 0.0035119 5876 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 107.67 18.247 147840000 8823500 11568000 8586600 0 0 0 15381000 14312000 12584000 0 0 0 8027700 8632300 9257800 0 0 0 16598000 16189000 17881000 0 0 0 19774 1230 19156 367480;367481;367482;367483;367484;367485;367486;367487;367488;367489;367490;367491 224417;224418;224419;224420;224421;224422 224421 6 TGLEDFHALVACGGFSYGDVLGAGEGWAK Unmodified 2983.3811 0.38105722 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.349 52.937 3 6.561E-08 26255 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.39 101.67 250700000 61900000 55483000 58117000 0 0 0 0 0 6380500 0 0 0 10481000 10082000 6108600 0 0 0 15473000 12280000 14394000 0 0 0 19775 1107 19157 367492;367493;367494;367495;367496;367497;367498;367499;367500;367501 224423;224424;224425 224423 3 TGLILDIFAQR Unmodified 1245.7081 0.70812208 1255 P25519 hflX GTPase HflX yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 53.675 52.281 2 8.7317E-06 25713 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.52 140.59 44670000 11900000 12588000 11832000 0 0 0 0 0 0 0 0 0 0 0 1827500 0 0 0 3713300 2808700 0 0 0 0 19776 1255 19158 367502;367503;367504;367505;367506;367507 224426;224427 224426 2 TGLLEIAK Unmodified 843.50657 0.50656873 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.787 27.427 2 0.0010178 12734 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.41 44.028 1498500000 136410000 129810000 121790000 2137700 2315700 2321300 132910000 128850000 125670000 3271800 2509500 2954100 87202000 100460000 87336000 1349000 1011600 0 148700000 149830000 116120000 5777200 4362700 5409200 19777 1143 19159 367508;367509;367510;367511;367512;367513;367514;367515;367516;367517;367518;367519;367520;367521;367522;367523;367524;367525;367526;367527;367528;367529;367530 224428;224429;224430;224431;224432;224433;224434;224435;224436;224437;224438;224439;224440;224441;224442 224431 15 TGLLSSSAASGVPQVENLENK Unmodified 2100.0699 0.069877064 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 38.531 36.871 2;3 2.1101E-21 17950 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 214.32 203.53 382610000 54071000 44006000 48991000 2355000 950520 1034100 23549000 28464000 24660000 0 0 0 21410000 18546000 20613000 0 0 0 31501000 35504000 26957000 0 0 0 19778 235 19160 367531;367532;367533;367534;367535;367536;367537;367538;367539;367540;367541;367542;367543;367544;367545;367546;367547;367548;367549;367550;367551;367552;367553;367554;367555;367556;367557 224443;224444;224445;224446;224447;224448;224449;224450;224451;224452;224453;224454;224455;224456;224457;224458 224451 16 TGLLSSSAASGVPQVENLENKGQ Unmodified 2285.1499 0.1499183 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 38.665 36.798 3 0.0002073 12829 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 71.148 67.344 22074000 0 0 0 6024200 4988900 5459400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1712000 1947800 1941300 19779 235 19161 367558;367559;367560;367561;367562;367563 224459;224460;224461 224461 3 TGLMGER Unmodified 762.36942 0.36942332 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.881 14.572 2 0.0017574 4621 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.34 69.818 1474700000 88159000 74518000 79029000 0 0 0 173010000 174010000 175720000 1856300 1798900 0 117030000 124160000 100970000 0 0 415960 126730000 112530000 124790000 0 0 0 19780 1437 19162 367564;367565;367566;367567;367568;367569;367570;367571;367572;367573;367574;367575;367576;367577;367578 224462;224463;224464;224465;224466;224467;224468;224469;224470;224471 224463 10 TGLMMLVGSINR Unmodified 1290.6788 0.67881256 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.083 44.427 2 3.1267E-06 17801 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 171.33 157.12 212390000 5609100 3713100 3026600 0 0 0 25741000 22959000 21945000 10159000 11524000 11257000 13814000 12409000 11844000 0 0 0 17857000 20184000 13949000 2303200 4094400 0 19781 27 19163 367579;367580;367581;367582;367583;367584;367585;367586;367587;367588;367589;367590;367591;367592;367593;367594;367595 224472;224473;224474;224475;224476;224477;224478;224479 224474 3 TGLPGVAWVR Unmodified 1054.5924 0.59236404 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.582 36.881 2 0.00035179 14776 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 108.7 104.34 85916000 0 0 0 0 1047300 0 14414000 15719000 13473000 7379400 7024800 7704000 0 4130100 0 1148800 583160 0 0 5267300 8025200 0 0 0 19782 1476 19164 367596;367597;367598;367599;367600;367601;367602;367603;367604;367605;367606;367607 224480;224481;224482 224481 3 TGLSLGVK Unmodified 773.4647 0.46470391 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.811 21.683 2 0.024076 8825 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.252 33.297 520820000 30544000 23159000 21286000 8152700 7923800 11535000 31350000 29449000 33270000 24432000 20001000 15480000 26690000 24412000 20967000 2451500 2105400 2433300 50234000 50809000 46086000 10988000 10503000 16563000 19783 1094 19165 367608;367609;367610;367611;367612;367613;367614;367615;367616;367617;367618;367619;367620;367621;367622;367623;367624;367625;367626;367627;367628;367629;367630;367631 224483;224484;224485;224486;224487;224488;224489;224490;224491;224492;224493 224488 11 TGLTTHLLAR Unmodified 1081.6244 0.62439245 578 P0AA82 codB Cytosine permease yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 19.812 20.354 3 0.024318 7810 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 50.108 36.299 17301000 4436500 4655700 4136500 1299300 1394900 1378300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19784 578 19166 367632;367633;367634;367635;367636;367637 224494 224494 1 TGMGGFSEGWAPGEHYPEK Unmodified 2035.8734 0.87342586 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.466 30.11 3 0.0033115 13963 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 53.554 53.554 212930000 15592000 13845000 19027000 0 0 0 17170000 13450000 17922000 0 0 0 18131000 15180000 18160000 0 0 0 20057000 24721000 19672000 0 0 0 19785 1548 19167 367638;367639;367640;367641;367642;367643;367644;367645;367646;367647;367648;367649 224495;224496 224496 2 TGMTNVTK Unmodified 850.42185 0.42185282 493 P0A964 cheW Chemotaxis protein CheW yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.419 12.256 2 0.0036492 3138 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 90.37 66.167 186820000 65329000 43086000 41199000 6804400 8244000 6729200 0 0 0 0 0 0 0 0 7031700 0 0 0 0 7796900 0 601200 0 0 19786 493 19168 367650;367651;367652;367653;367654;367655;367656;367657;367658 224497;224498;224499;224500 224499 3 TGMVLVGGEITTSAWVDIEEITR Unmodified 2476.2519 0.25194053 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.491 53.971 3 0.0090311 22003 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 57.068 54.145 89729000 0 0 15955000 0 0 0 7300900 9247800 9640900 5956100 5470000 5092400 0 8549800 0 0 0 0 5064700 10872000 6580000 0 0 0 19787 388 19169 367659;367660;367661;367662;367663;367664;367665;367666;367667;367668;367669 224501 224501 0 TGNAPAILQVYEVGTATMMASK Unmodified 2252.1181 0.11808959 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 53.903 52.464 2;3 1.5032E-52 26010 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 314.34 313.6 3850100000 22942000 33423000 33786000 0 0 0 287880000 260000000 256770000 0 0 0 385280000 379120000 350020000 0 0 0 623340000 624560000 593010000 0 0 0 19788 993 19170 367670;367671;367672;367673;367674;367675;367676;367677;367678;367679;367680;367681;367682;367683;367684;367685;367686;367687;367688;367689;367690;367691;367692 224502;224503;224504;224505;224506;224507;224508;224509;224510;224511;224512;224513;224514;224515;224516;224517;224518;224519;224520;224521;224522;224523;224524 224505 23 TGNAPAILQVYEVGTATMMASK Oxidation (M) 2268.113 0.11300421 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 2 2 1 51.11 49.81 2;3 4.4071E-06 24307 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 90.422 49.797 79112000 0 0 0 2014800 2004100 1135400 5894400 5541300 0 5279500 0 0 0 0 8305000 0 0 0 0 24517000 22629000 0 1791900 0 19789 993 19170 367693;367694;367695;367696;367697;367698;367699;367700;367701;367702;367703;367704 224525;224526;224527 224526 458;459 3 TGNAVILR Unmodified 842.4974 0.49740102 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 16.609 17.048 2 0.0030309 5536 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 108.92 70.972 313210000 74824000 70754000 75761000 0 0 0 0 0 0 3240300 1400300 0 0 38599000 0 0 150610 0 0 0 48486000 0 0 0 19790 148 19171 367705;367706;367707;367708;367709;367710;367711;367712 224528 224528 0 TGNIFVLDRR Unmodified 1189.6568 0.65675521 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 1 By MS/MS 1 26.4 24.803 3 0.048928 8980 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 45.158 39.674 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19791 1115 19172 367713 224529 224529 1 TGNMMQPQLADK Oxidation (M) 1348.6115 0.61152086 158 P07118 valS Valine--tRNA ligase yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 15.686 16.512 2 0.026025 5816 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 56.043 51.055 36983000 0 0 0 0 0 0 8906100 6481100 11059000 0 0 0 0 1743000 3433400 0 0 0 2230100 3130100 0 0 0 0 19792 158 19173 367714;367715;367716;367717;367718;367719;367720 224530 224530 50 1 TGNMMQPQLADK Unmodified 1332.6166 0.61660624 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 21.24 21.523 2 1.56E-08 8473 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172.17 160.68 1219500000 122510000 112200000 92247000 0 0 0 96580000 81784000 85128000 0 0 1022500 104210000 91350000 94687000 0 0 0 114440000 113530000 109830000 0 0 0 19793 158 19173 367721;367722;367723;367724;367725;367726;367727;367728;367729;367730;367731;367732;367733 224531;224532;224533;224534;224535;224536;224537;224538;224539;224540;224541;224542 224538 12 TGNRHDLAVEPPAPTVLQK Unmodified 2042.0909 0.090887278 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.604 22.883 3 4.3533E-05 10253 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.574 85.579 288200000 31594000 29287000 19524000 0 0 0 37682000 27206000 35837000 0 0 0 15763000 18078000 15413000 0 0 0 18848000 21298000 17669000 0 0 0 19794 256 19174 367734;367735;367736;367737;367738;367739;367740;367741;367742;367743;367744;367745 224543;224544;224545;224546;224547;224548;224549;224550;224551;224552;224553;224554 224543 12 TGNTDSLALQNIGLETDSR Unmodified 2003.976 0.97597668 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 40.029 38.206 2;3 5.6743E-95 18578 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 430.43 423.73 796620000 121150000 122990000 109860000 4571500 4162500 5039800 27193000 29425000 25794000 3172900 5938800 6062000 36780000 37428000 32174000 0 0 0 71098000 74251000 71965000 4174800 3392400 0 19795 1302 19175 367746;367747;367748;367749;367750;367751;367752;367753;367754;367755;367756;367757;367758;367759;367760;367761;367762;367763;367764;367765;367766;367767;367768;367769;367770;367771;367772;367773;367774;367775;367776;367777;367778;367779;367780;367781;367782;367783 224555;224556;224557;224558;224559;224560;224561;224562;224563;224564;224565;224566;224567;224568;224569;224570;224571;224572;224573;224574;224575;224576 224567 22 TGNTPDGR Unmodified 816.37259 0.37259444 212;1559 P09373;P42632 pflB;tdcE Formate acetyltransferase 1;PFL-like enzyme TdcE no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 5.8915 6.7297 2 5.9077E-05 1094 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.26 145.46 3864200000 308620000 278950000 239530000 0 0 0 212030 0 177870 0 0 0 689630000 682110000 625810000 0 0 0 505370000 533770000 0 0 0 0 19796 212;1559 19176 367784;367785;367786;367787;367788;367789;367790;367791;367792;367793;367794 224577;224578;224579;224580;224581;224582;224583;224584;224585 224579 9 TGNTPDGRR Unmodified 972.47371 0.47370547 212;1559 P09373;P42632 pflB;tdcE Formate acetyltransferase 1;PFL-like enzyme TdcE no no 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 9.7488 9.8824 2 0.022901 1673 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 63.48 57.093 15245000 0 0 0 0 0 0 0 0 0 2073600 1859000 1919700 0 0 0 2183200 1127400 1094000 0 0 0 1937300 1571200 1479700 19797 212;1559 19177 367795;367796;367797;367798;367799;367800;367801;367802;367803 224586;224587 224586 2 TGPEAILELEHMGLPFSR Unmodified 1996.0088 0.0087971324 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 52.852 51.563 2;3 1.3821E-80 25025 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 322.07 301.86 2518100000 150690000 146020000 127740000 64553000 41226000 70727000 92532000 92013000 79649000 40684000 42316000 47726000 161100000 140050000 144040000 11147000 18967000 15093000 243080000 267470000 292910000 67943000 69928000 90498000 19798 698 19178 367804;367805;367806;367807;367808;367809;367810;367811;367812;367813;367814;367815;367816;367817;367818;367819;367820;367821;367822;367823;367824;367825;367826;367827;367828;367829;367830;367831;367832;367833;367834;367835;367836;367837;367838;367839;367840;367841;367842 224588;224589;224590;224591;224592;224593;224594;224595;224596;224597;224598;224599;224600;224601;224602;224603;224604;224605;224606;224607;224608;224609;224610;224611;224612;224613;224614;224615;224616;224617;224618;224619;224620;224621 224605 34 TGPTESLIQGLHQSVFR Unmodified 1868.9745 0.97446054 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.852 39.16 3 8.8388E-09 19497 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.29 103.63 191520000 2730700 0 0 0 0 0 26460000 23396000 27148000 0 2094700 2009400 0 14174000 10420000 0 0 3043100 29331000 27114000 23599000 0 0 0 19799 35 19179 367843;367844;367845;367846;367847;367848;367849;367850;367851;367852;367853;367854 224622;224623;224624;224625;224626;224627 224622 6 TGQLDDEDWAR Unmodified 1304.5633 0.56330834 714 P0ACB0 dnaB Replicative DNA helicase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.559 24.473 2 0.00026366 10813 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 96.342 96.342 37689000 7059300 8112700 6941800 0 0 0 2076500 0 0 0 0 744850 2751500 0 0 0 0 0 3407400 3030800 3564000 0 0 0 19800 714 19180 367855;367856;367857;367858;367859;367860;367861;367862;367863 224628;224629 224629 2 TGQVGWELQR Unmodified 1172.5938 0.5938206 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.136 24.972 2 1.3336E-05 11352 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 175.91 158.67 1081500000 55496000 45040000 44494000 0 0 0 90199000 94099000 90950000 0 0 0 89587000 91839000 79475000 0 0 0 122550000 142260000 135560000 0 0 0 19801 1497 19181 367864;367865;367866;367867;367868;367869;367870;367871;367872;367873;367874;367875 224630;224631;224632;224633;224634;224635;224636;224637;224638;224639;224640 224633 9 TGRNPQTGK Unmodified 957.49919 0.49919194 726;727 P0ACF0;P0ACF4 hupA;hupB DNA-binding protein HU-alpha;DNA-binding protein HU-beta no no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 2 2 1 1 8.1244 8.4467 2 8.709E-12 1472 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 223.32 196.72 1683400000 0 0 0 13447000 11376000 17649000 0 0 0 137830000 140400000 118020000 0 0 0 553570000 205060000 216900000 0 0 0 84637000 86702000 97826000 19802 726;727 19182 367876;367877;367878;367879;367880;367881;367882;367883;367884;367885;367886;367887;367888;367889;367890 224641;224642;224643;224644;224645;224646;224647;224648;224649;224650;224651;224652 224644 12 TGRNPQTGKEIK Unmodified 1327.7208 0.72081203 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 10.507 10.512 2;3 6.4288E-05 1906 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 85.536 40.458 94374000 0 0 0 0 0 0 0 0 0 4811500 1898100 0 0 0 0 28455000 34962000 24248000 0 0 0 0 0 0 19803 726 19183 367891;367892;367893;367894;367895;367896 224653;224654;224655;224656 224655 4 TGRNPQTGKEITIAAAK Unmodified 1754.9639 0.96389585 727 P0ACF4 hupB DNA-binding protein HU-beta yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.653 13.063 4 1.8568E-05 3026 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 86.488 82.14 104510000 0 0 0 3513000 5402700 5175600 0 0 0 1515700 0 1089700 0 0 0 16396000 29776000 31176000 0 0 0 4104400 3049700 3311800 19804 727 19184 367897;367898;367899;367900;367901;367902;367903;367904;367905;367906;367907 224657;224658 224658 2 TGSAALDLAYVAAGR Unmodified 1434.7467 0.74669243 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 40.009 38.331 2;3 2.4325E-11 18946 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 194.5 183.98 914350000 67438000 69062000 69910000 1738300 2686600 1812400 85948000 78358000 81118000 0 0 0 62475000 51714000 54416000 0 0 0 85545000 107970000 94160000 0 0 0 19805 787 19185 367908;367909;367910;367911;367912;367913;367914;367915;367916;367917;367918;367919;367920;367921;367922;367923;367924;367925;367926;367927;367928;367929;367930;367931;367932;367933;367934;367935 224659;224660;224661;224662;224663;224664;224665;224666;224667;224668;224669;224670;224671 224661 8 TGSAGGTGHVVEFCGEAIR Unmodified 1903.8847 0.88465925 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 23.414 22.712 3 5.0788E-07 9689 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.37 92.617 226770000 69767000 69351000 67403000 0 0 0 6411000 0 3604400 0 0 0 5521600 0 0 0 0 0 0 0 4712700 0 0 0 19806 225 19186 367936;367937;367938;367939;367940;367941;367942 224672;224673;224674 224673 3 TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSR Unmodified 3814.9265 0.92651388 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 1 1 54.177 52.749 3;4 2.2367E-72 25847 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 257.37 257.37 2681800000 74402000 52734000 56338000 17400000 25491000 20526000 208420000 210680000 214150000 76997000 133720000 73531000 196650000 204430000 175210000 0 0 0 284020000 242710000 248360000 73261000 54239000 38572000 19807 646 19187 367943;367944;367945;367946;367947;367948;367949;367950;367951;367952;367953;367954;367955;367956;367957;367958;367959;367960;367961;367962;367963;367964;367965;367966;367967;367968;367969;367970;367971;367972;367973;367974;367975;367976;367977;367978;367979;367980 224675;224676;224677;224678;224679;224680;224681;224682;224683;224684;224685;224686;224687;224688;224689;224690;224691;224692;224693;224694;224695;224696 224685 22 TGSLIMIFEVEGAAPAAAPAK Unmodified 2043.0711 0.071063038 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 4 5 5 2 2 2 2 2 3 1 2 2 3 2 2 3 4 2 3 4 5 53.826 52.565 2;3 4.8696E-28 21323 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 254.4 240.72 5918900000 214380000 182190000 119410000 524730000 634980000 580550000 209910000 218100000 206470000 66621000 77019000 66185000 62047000 126080000 108580000 17149000 11015000 11411000 300700000 276680000 227440000 618030000 488990000 570170000 19808 133 19188 367981;367982;367983;367984;367985;367986;367987;367988;367989;367990;367991;367992;367993;367994;367995;367996;367997;367998;367999;368000;368001;368002;368003;368004;368005;368006;368007;368008;368009;368010;368011;368012;368013;368014;368015;368016;368017;368018;368019;368020;368021;368022;368023;368024;368025;368026;368027;368028;368029;368030;368031;368032;368033;368034;368035;368036;368037;368038;368039;368040;368041;368042;368043;368044;368045;368046;368047;368048;368049;368050 224697;224698;224699;224700;224701;224702;224703;224704;224705;224706;224707;224708;224709;224710;224711;224712;224713;224714;224715;224716;224717;224718;224719;224720;224721;224722;224723;224724;224725;224726;224727;224728;224729;224730;224731;224732;224733;224734;224735;224736;224737;224738;224739;224740;224741;224742;224743;224744;224745;224746;224747;224748;224749;224750;224751;224752;224753;224754;224755;224756;224757;224758;224759;224760;224761;224762;224763;224764;224765;224766;224767;224768;224769 224703 72 TGSLIMIFEVEGAAPAAAPAK Oxidation (M) 2059.066 0.06597766 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 3 1 1 1 2 2 2 51.755 50.419 3 1.3712E-10 18116 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 126.84 123.6 134830000 0 0 0 22911000 21432000 19507000 5775000 8757600 0 926310 0 0 0 0 1833800 0 0 0 0 5034100 0 15997000 16290000 16368000 19809 133 19188 368051;368052;368053;368054;368055;368056;368057;368058;368059;368060;368061;368062;368063;368064;368065;368066;368067;368068;368069;368070;368071;368072 224770;224771;224772;224773;224774;224775;224776;224777;224778;224779;224780;224781 224776 47 10 TGSLIMIFEVEGAAPAAAPAKQEAAAPAPAAK Unmodified 3048.5954 0.59540709 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 8 8 3 3 4 2 2 2 8 10 6 49.032 47.651 2;3;4;5 1.6028E-54 16470 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 290.18 274.94 9984000000 0 0 0 1814000000 1841800000 1611900000 0 0 0 137160000 121530000 125460000 0 0 0 41044000 29395000 25285000 0 0 0 1491200000 1454200000 1291000000 19810 133 19189 368073;368074;368075;368076;368077;368078;368079;368080;368081;368082;368083;368084;368085;368086;368087;368088;368089;368090;368091;368092;368093;368094;368095;368096;368097;368098;368099;368100;368101;368102;368103;368104;368105;368106;368107;368108;368109;368110;368111;368112;368113;368114;368115;368116;368117;368118;368119;368120;368121;368122;368123;368124;368125;368126;368127;368128;368129;368130;368131;368132;368133;368134;368135 224782;224783;224784;224785;224786;224787;224788;224789;224790;224791;224792;224793;224794;224795;224796;224797;224798;224799;224800;224801;224802;224803;224804;224805;224806;224807;224808;224809;224810;224811;224812;224813;224814;224815;224816;224817;224818;224819;224820;224821;224822;224823;224824;224825;224826;224827;224828;224829;224830;224831;224832;224833;224834;224835;224836;224837;224838;224839;224840;224841;224842;224843;224844;224845;224846;224847;224848;224849;224850;224851;224852;224853;224854;224855;224856;224857;224858;224859;224860;224861;224862;224863;224864;224865;224866;224867;224868;224869;224870;224871;224872;224873;224874;224875;224876;224877 224841 95 TGSLIMIFEVEGAAPAAAPAKQEAAAPAPAAK Oxidation (M) 3064.5903 0.59032172 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 7 6 1 1 1 3 4 2 45.711 43.988 3;4 5.3309E-26 15556 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 178.91 176.32 461700000 0 0 0 87466000 73108000 99989000 0 0 0 5848600 7876000 6130100 0 0 0 0 0 0 0 0 0 74517000 61199000 45565000 19811 133 19189 368136;368137;368138;368139;368140;368141;368142;368143;368144;368145;368146;368147;368148;368149;368150;368151;368152;368153;368154;368155;368156;368157;368158;368159;368160;368161;368162;368163;368164 224878;224879;224880;224881;224882;224883;224884;224885;224886;224887;224888;224889;224890;224891;224892;224893;224894;224895;224896;224897;224898;224899;224900;224901;224902;224903;224904 224892 47 26 TGSLNLYVMDLASGQIR Unmodified 1836.9404 0.94038322 398 P0A855 tolB Protein TolB yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 1 52.626 51.351 2;3 1.3269E-10 25059 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.76 172.51 321190000 32642000 32821000 28876000 7673400 2669700 7852000 6468200 4539200 25030000 6469300 3119900 3753700 5381400 5632500 23550000 0 0 0 43197000 37839000 34716000 3663100 5291500 0 19812 398 19190 368165;368166;368167;368168;368169;368170;368171;368172;368173;368174;368175;368176;368177;368178;368179;368180;368181;368182;368183;368184;368185;368186;368187;368188;368189;368190;368191;368192;368193;368194;368195 224905;224906;224907;224908;224909;224910;224911;224912;224913 224906 8 TGSVYIVKPK Unmodified 1090.6386 0.63864553 1465 P37330 glcB Malate synthase G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 1 1 1 1 1 14.183 14.977 2;3 0.00031008 4879 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.16 108.49 466490000 115180000 132650000 106950000 0 0 0 9292500 15966000 16443000 0 0 0 6342800 8081400 8709000 0 0 0 19758000 14033000 13087000 0 0 0 19813 1465 19191 368196;368197;368198;368199;368200;368201;368202;368203;368204;368205;368206;368207;368208;368209;368210;368211 224914;224915;224916;224917;224918;224919;224920;224921;224922;224923;224924;224925;224926;224927 224922 12 TGTAVVR Unmodified 702.40244 0.40243801 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 2 2 1 2 2 2 1 2 2 2 11.011 11.783 2 0.0020465 2701 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.22 70.461 3813000000 39521000 30576000 25618000 0 0 0 806720000 663560000 640370000 0 1661600 0 382380000 341170000 368070000 0 0 1188400 186900000 159280000 165960000 0 0 0 19814 40 19192 368212;368213;368214;368215;368216;368217;368218;368219;368220;368221;368222;368223;368224;368225;368226;368227;368228;368229;368230;368231;368232;368233;368234 224928;224929;224930;224931;224932;224933;224934;224935;224936;224937;224938 224931 5 TGTGTLSIFGHQMR Unmodified 1504.7456 0.74564657 407 P0A884 thyA Thymidylate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 29.88 28.546 2;3 1.1133E-26 13393 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 240.1 230.14 465450000 33399000 35005000 37518000 0 0 0 32453000 19200000 30479000 0 0 0 36732000 34737000 33785000 0 0 0 54938000 62546000 54663000 0 0 0 19815 407 19193 368235;368236;368237;368238;368239;368240;368241;368242;368243;368244;368245;368246;368247;368248;368249;368250;368251;368252;368253;368254;368255;368256;368257 224939;224940;224941;224942;224943;224944;224945;224946;224947;224948;224949;224950;224951;224952;224953 224941 15 TGTLFAMEQMGVAPDLTTFAK Unmodified 2228.0857 0.085726824 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 1 1 1 2 1 54.374 52.93 2;3 6.9867E-43 25931 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 300.51 286.92 560150000 148680000 142700000 132430000 0 0 0 16436000 30828000 17551000 0 0 0 9194500 5710300 8737100 0 0 0 11255000 27472000 9147900 0 0 0 19816 1194 19194 368258;368259;368260;368261;368262;368263;368264;368265;368266;368267;368268;368269;368270;368271;368272;368273;368274;368275 224954;224955;224956;224957;224958;224959 224958 6 TGTLSMTIQAMLR Unmodified 1421.7371 0.73705572 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 49.733 48.219 2 0.00023894 19201 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 85.355 80.041 18345000 0 0 0 0 1374400 0 1923200 0 0 3832200 3569100 3432100 0 0 0 0 0 0 0 0 0 0 2219600 1994900 19817 324 19195 368276;368277;368278;368279;368280;368281;368282 224960;224961 224961 2 TGTLTEGKPQVVAVK Unmodified 1526.8668 0.86680757 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 1 By MS/MS By matching By MS/MS By matching 1 1 1 1 17.059 17.662 3 0.086689 6546 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 31.776 24.244 63728000 0 0 0 0 0 0 17310000 22652000 18606000 0 0 0 0 0 0 0 0 0 5159500 0 0 0 0 0 19818 1980 19196 368283;368284;368285;368286 224962;224963 224962 2 TGTLTQDK Unmodified 862.43961 0.43961137 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 10.652 11.299 2 0.088576 2213 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 51.63 38.422 355290000 0 0 0 9239300 8338700 10572000 0 0 0 9438200 9027400 8359000 100740000 98538000 95527000 0 0 5513700 0 0 0 0 0 0 19819 647 19197 368287;368288;368289;368290;368291;368292;368293;368294;368295;368296 224964 224964 1 TGTPAAQIGLK Unmodified 1055.5975 0.597509 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 20.838 20.896 2 0.00026112 8647 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 96.668 80.465 1529900000 0 0 144470000 3211600 4554500 4135800 191380000 196140000 178840000 10031000 11208000 11375000 175090000 0 0 3158400 2486300 2796800 198400000 182350000 188850000 7610700 7005600 6847700 19820 1044 19198 368297;368298;368299;368300;368301;368302;368303;368304;368305;368306;368307;368308;368309;368310;368311;368312;368313;368314;368315;368316;368317;368318;368319;368320;368321;368322 224965;224966;224967;224968;224969;224970;224971;224972;224973;224974;224975;224976;224977;224978;224979 224970 15 TGTPLSVLIIDVDK Unmodified 1469.8341 0.83411046 579 P0AA89 dosC Diguanylate cyclase DosC yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 52.337 51.132 2 0.0050348 24862 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 64.199 61.26 24592000 7891600 7367100 9333600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19821 579 19199 368323;368324;368325 224980 224980 0 TGTTAGAGYNLVASATQGDMR Unmodified 2040.9535 0.9534671 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.568 33.774 2 8.2304E-35 16585 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 220.21 189.77 75596000 8409300 4649300 0 2366400 1612500 2206200 9909200 6335400 0 5574500 4644200 4954800 4155500 3897000 0 0 0 0 6396100 4560500 0 2574800 3350400 0 19822 189 19200 368326;368327;368328;368329;368330;368331;368332;368333;368334;368335;368336;368337;368338;368339;368340;368341 224981;224982;224983;224984 224984 4 TGTVLAAVK Unmodified 858.51747 0.51746776 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.906 18.4 2 0.00041638 6695 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.81 70.605 1380300000 110630000 108320000 95419000 5589000 5658400 5155500 139870000 131330000 125210000 3881000 2789500 3626200 89367000 82409000 74462000 0 0 0 140190000 115150000 132910000 3214300 2545100 2584600 19823 784 19201 368342;368343;368344;368345;368346;368347;368348;368349;368350;368351;368352;368353;368354;368355;368356;368357;368358;368359;368360;368361;368362 224985;224986;224987;224988;224989;224990;224991;224992;224993;224994;224995;224996;224997;224998;224999 224995 15 TGTVLTAVLQDHGTLAEHDIYIAGR Unmodified 2650.3715 0.37147881 875 P0AEN1 fre NAD(P)H-flavin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 43.275 41.616 3;4 3.439E-50 20232 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 228.62 221.34 1728900000 151260000 141820000 142180000 2451200 2222300 2555300 142120000 130080000 132840000 3834100 3005700 2531200 104330000 121840000 111850000 0 0 0 180180000 180970000 161130000 4551000 3984800 3157600 19824 875 19202 368363;368364;368365;368366;368367;368368;368369;368370;368371;368372;368373;368374;368375;368376;368377;368378;368379;368380;368381;368382;368383;368384;368385;368386;368387;368388;368389;368390;368391;368392;368393;368394;368395 225000;225001;225002;225003;225004;225005;225006;225007;225008;225009;225010;225011;225012;225013;225014;225015;225016;225017;225018;225019;225020;225021;225022;225023;225024;225025;225026 225009 27 TGTVVTTDDR Unmodified 1063.5146 0.51456723 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 2 1 1 1 1 11.892 12.733 2 3.7337E-12 3561 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.12 179.56 497990000 43754000 45006000 34997000 0 0 0 47012000 42407000 37871000 0 0 0 0 49726000 40984000 0 0 0 51758000 52845000 51628000 0 0 0 19825 828 19203 368396;368397;368398;368399;368400;368401;368402;368403;368404;368405;368406;368407 225027;225028;225029;225030;225031;225032;225033;225034;225035 225032 3 TGVCQLDNANVTDAILSR Unmodified 1945.9527 0.95273882 156 P07102 appA Periplasmic AppA protein;Phosphoanhydride phosphohydrolase;4-phytase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 40.688 38.95 2 0.0024605 19209 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 82.651 76.618 41987000 5267600 6315000 0 0 0 0 7403100 7909500 7186400 0 0 0 3285200 0 4620500 0 0 0 0 0 0 0 0 0 19826 156 19204 368408;368409;368410;368411;368412;368413;368414 225036 225036 0 TGVDIIK Unmodified 744.43815 0.43815481 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.653 19.864 2 0.024258 7617 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.029 44.963 394560000 0 0 111570000 2961600 2842300 3197900 9365800 65163000 0 8737500 5591700 6632600 84930000 0 81062000 0 0 0 0 0 0 3982900 4207200 4322900 19827 218 19205 368415;368416;368417;368418;368419;368420;368421;368422;368423;368424;368425;368426;368427;368428 225037;225038 225038 1 TGVGVQDVLER Unmodified 1171.6197 0.619701 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.64 28.39 2 9.8045E-08 9339 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 173.32 152.45 1413300000 82783000 79860000 90416000 9987100 8201600 9460000 67326000 71346000 66780000 0 14691000 14587000 74950000 69355000 68835000 66015000 46313000 60535000 90336000 111290000 99388000 70700000 68436000 71747000 19828 1633 19206 368429;368430;368431;368432;368433;368434;368435;368436;368437;368438;368439;368440;368441;368442;368443;368444;368445;368446;368447;368448;368449;368450;368451 225039;225040;225041;225042;225043;225044;225045;225046;225047;225048;225049;225050;225051;225052;225053;225054;225055;225056;225057;225058;225059;225060;225061 225041 22 TGVGYPQLSAVIECADAAHGLGGMIVSDGGCTTPGDVAK Unmodified 3830.7914 0.79135908 1623 P60560 guaC GMP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.649 51.385 3;4 1.0986E-22 25403 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.79 135.64 998060000 100710000 95631000 73479000 0 0 0 59385000 58756000 53561000 0 0 0 91621000 87721000 88077000 0 0 0 92860000 86320000 109930000 0 0 0 19829 1623 19207 368452;368453;368454;368455;368456;368457;368458;368459;368460;368461;368462;368463;368464;368465;368466;368467;368468;368469;368470;368471;368472;368473;368474;368475 225062;225063;225064;225065;225066;225067;225068;225069;225070;225071;225072;225073;225074;225075;225076;225077;225078;225079;225080;225081;225082 225064 21 TGVILGHEGIGVVAEVGPGVTSLKPGDR Unmodified 2713.4763 0.47627824 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 39.434 37.674 3 5.8062E-23 18138 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 171.73 169.42 77151000 13605000 15504000 16099000 0 0 0 7311400 6446100 6832200 0 0 0 0 0 0 0 0 0 5614400 0 5737800 0 0 0 19830 1541 19208 368476;368477;368478;368479;368480;368481;368482;368483 225083;225084;225085 225085 3 TGVLDQVLDALK Unmodified 1270.7133 0.71326704 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.941 53.468 2 7.1674E-12 26615 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 192.12 177.91 831110000 41184000 43236000 37831000 0 0 0 82336000 72829000 84481000 0 0 0 101270000 80842000 83056000 0 0 0 74223000 75041000 54780000 0 0 0 19831 1959 19209 368484;368485;368486;368487;368488;368489;368490;368491;368492;368493;368494;368495 225086;225087;225088;225089;225090;225091;225092;225093;225094 225086 9 TGVPVVWIK Unmodified 997.59605 0.59605244 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.081 36.465 2 0.0052377 18198 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 75.189 69.71 1171000000 47686000 45387000 43767000 10277000 12689000 11149000 83483000 77701000 76599000 42323000 45430000 38519000 71998000 74830000 67393000 14220000 9194800 9380500 108110000 96961000 94568000 31347000 29769000 28180000 19832 1426 19210 368496;368497;368498;368499;368500;368501;368502;368503;368504;368505;368506;368507;368508;368509;368510;368511;368512;368513;368514;368515;368516;368517;368518;368519 225095;225096;225097;225098;225099;225100;225101;225102;225103;225104;225105;225106;225107;225108;225109;225110;225111;225112;225113;225114;225115;225116;225117;225118 225101 24 TGVSALGCTLPEK Unmodified 1331.6755 0.67550132 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 26.547 25.631 2 9.4117E-07 11515 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.5 126.79 521490000 189750000 173630000 156600000 0 0 0 0 0 0 0 0 0 1507800 0 0 0 0 0 0 0 0 0 0 0 19833 1374 19211 368520;368521;368522;368523 225119;225120;225121 225120 3 TGVSNTLENEFK Unmodified 1337.6463 0.64630969 888 P0AEU7 skp Chaperone protein Skp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.348 27.082 2 1.8817E-32 12762 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 232.79 163.2 6966300000 883770000 804880000 674610000 10908000 11667000 9973900 632040000 0 509290000 86700000 77931000 79747000 542940000 0 579140000 46874000 34765000 37566000 572300000 636240000 544530000 66211000 62654000 61529000 19834 888 19212 368524;368525;368526;368527;368528;368529;368530;368531;368532;368533;368534;368535;368536;368537;368538;368539;368540;368541;368542;368543;368544;368545;368546;368547 225122;225123;225124;225125;225126;225127;225128;225129;225130;225131;225132;225133;225134;225135;225136;225137;225138;225139;225140 225127 19 TGVSNTLENEFKGR Unmodified 1550.7689 0.76888444 888 P0AEU7 skp Chaperone protein Skp yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.166 22.886 3 2.6006E-05 7176 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 98.942 87.251 30024000 0 0 0 0 0 0 0 0 0 4747700 5422000 4770000 0 0 0 0 0 0 0 0 0 6355900 4705700 4022200 19835 888 19213 368548;368549;368550;368551;368552;368553;368554;368555;368556 225141;225142;225143;225144;225145 225141 5 TGVTVQSSLDAVK Unmodified 1303.6983 0.69834526 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.995 24.874 2 1.5947E-07 10729 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 154.24 117.05 129070000 11269000 10327000 9977800 0 0 0 12185000 12741000 14106000 0 0 0 10067000 8748700 9848000 0 0 0 9057700 9667600 11079000 0 0 0 19836 85 19214 368557;368558;368559;368560;368561;368562;368563;368564;368565;368566;368567;368568 225146;225147;225148;225149;225150;225151;225152;225153;225154;225155;225156;225157 225156 12 TGVVFCQYPEGVR Unmodified 1510.7238 0.7238485 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.793 30.407 2 3.3689E-07 14582 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 175.86 173.01 426540000 20402000 18129000 19889000 6131000 5785100 5197700 49720000 44121000 41344000 21134000 18472000 16000000 22963000 23614000 22242000 2686000 1746000 1905900 24280000 26037000 22592000 4452900 3967300 3729800 19837 33 19215 368569;368570;368571;368572;368573;368574;368575;368576;368577;368578;368579;368580;368581;368582;368583;368584;368585;368586;368587;368588;368589;368590;368591;368592 225158;225159;225160;225161;225162;225163;225164;225165;225166;225167;225168;225169;225170;225171;225172;225173;225174;225175;225176;225177;225178;225179 225163 22 TGVVLAPDGGILGK Unmodified 1295.7449 0.74490152 1941 P77775 yfcH Epimerase family protein YfcH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.336 36.687 2 2.5611E-05 12769 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 91.937 83.717 178950000 31219000 28293000 28965000 5876700 5014900 5760500 0 0 0 9734400 10702000 10298000 0 0 0 893570 637450 0 13751000 11156000 9818000 2446200 2474300 1915300 19838 1941 19216 368593;368594;368595;368596;368597;368598;368599;368600;368601;368602;368603;368604;368605;368606;368607;368608;368609;368610 225180;225181;225182;225183;225184;225185;225186;225187;225188;225189;225190;225191 225188 12 TGWLDTVAVR Unmodified 1116.5928 0.59275797 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.048 37.262 2 3.5748E-07 18363 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 176.6 160.94 7062300000 758900000 681630000 633300000 0 0 0 631200000 573050000 622880000 5283100 0 0 614040000 532790000 521810000 0 0 0 763690000 723770000 0 0 0 0 19839 333 19217 368611;368612;368613;368614;368615;368616;368617;368618;368619;368620;368621;368622 225192;225193;225194;225195;225196;225197;225198;225199;225200;225201;225202 225194 10 TGWTQLIELATK Unmodified 1359.7398 0.73981614 1504 P38051 menF Isochorismate synthase MenF yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.545 51.297 2 5.7381E-05 25084 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.83 95.878 155430000 20428000 16543000 20220000 0 0 0 9913700 9345100 10064000 0 0 0 11542000 10035000 8355600 0 0 0 13468000 13896000 11616000 0 0 0 19840 1504 19218 368623;368624;368625;368626;368627;368628;368629;368630;368631;368632;368633;368634 225203;225204;225205 225205 2 TGYAVKPIAGR Unmodified 1131.64 0.64004252 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.879 14.745 2 7.2008E-05 4667 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 131.22 110.52 221170000 21727000 18459000 21433000 0 0 0 21202000 19832000 20606000 0 0 0 17724000 16190000 18181000 0 0 0 14403000 14207000 17210000 0 0 0 19841 880 19219 368635;368636;368637;368638;368639;368640;368641;368642;368643;368644;368645;368646 225206;225207;225208;225209;225210;225211;225212;225213;225214 225211 9 TGYDGAAPPK Unmodified 975.46616 0.46616048 1080 P12994 ybhB UPF0098 protein YbhB yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 12.355 13.054 2 0.032468 3779 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 56.434 51.752 132210000 47403000 45474000 39335000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19842 1080 19220 368647;368648;368649 225215;225216 225215 2 TGYLPITK Unmodified 891.50657 0.50656873 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.582 23.591 2 0.00073672 10301 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 125.31 114.5 16773000000 171480000 151420000 153230000 0 0 0 1552200000 1512500000 1418100000 1990500 1499600 2037100 1417200000 1245500000 1297000000 0 1535200 0 2656300000 2588300000 2596100000 3168000 0 2984400 19843 993 19221 368650;368651;368652;368653;368654;368655;368656;368657;368658;368659;368660;368661;368662;368663;368664;368665;368666;368667 225217;225218;225219;225220;225221;225222;225223;225224;225225;225226;225227;225228;225229;225230;225231;225232;225233 225222 17 TGYYLDQR Unmodified 1014.4771 0.47705951 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.08 19.407 2 0.001419 7433 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 109.01 101.34 191820000 10650000 12243000 12713000 0 0 0 12822000 18807000 12226000 5014400 3871700 4406800 14963000 13628000 10832000 2232100 0 0 14629000 18087000 15612000 2938700 3090300 3049800 19844 1787 19222 368668;368669;368670;368671;368672;368673;368674;368675;368676;368677;368678;368679;368680;368681;368682;368683;368684;368685;368686 225234;225235;225236;225237;225238;225239;225240;225241;225242;225243;225244;225245;225246;225247 225242 11 THAGIEQAISR Unmodified 1181.6153 0.61528433 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 2 2 2 2 2 2 2 2 2 2 2 2 13.436 14.341 2;3 3.8463E-10 4470 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 183.07 174.85 21134000000 5539600000 4800300000 4222400000 11005000 14587000 11993000 1034900000 947770000 1071500000 0 0 0 466370000 389330000 304410000 0 0 0 698920000 870470000 750820000 0 0 0 19845 517 19223 368687;368688;368689;368690;368691;368692;368693;368694;368695;368696;368697;368698;368699;368700;368701;368702;368703;368704;368705;368706;368707;368708;368709;368710;368711;368712;368713;368714;368715;368716;368717;368718 225248;225249;225250;225251;225252;225253;225254;225255;225256;225257;225258;225259;225260;225261;225262;225263;225264;225265;225266;225267;225268;225269;225270;225271;225272;225273;225274;225275;225276;225277;225278 225264 31 THAPVDFDTAVASTITSHDAGYINK Unmodified 2630.2613 0.26125966 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 4 2 2 2 4 4 3 2 2 2 4 3 5 1 4 5 4 2 2 2 37.979 36.229 2;3;4 9.3821E-112 17226 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 420.53 384.51 34257000000 1646400000 778970000 1672900000 34460000 31369000 35535000 4830900000 4916900000 4937100000 66868000 60699000 63573000 3568200000 1641700000 3177100000 0 0 2703500 2701200000 2844200000 1140300000 35356000 35116000 35040000 19846 212 19224 368719;368720;368721;368722;368723;368724;368725;368726;368727;368728;368729;368730;368731;368732;368733;368734;368735;368736;368737;368738;368739;368740;368741;368742;368743;368744;368745;368746;368747;368748;368749;368750;368751;368752;368753;368754;368755;368756;368757;368758;368759;368760;368761;368762;368763;368764;368765;368766;368767;368768;368769;368770;368771;368772;368773;368774;368775;368776;368777;368778;368779;368780;368781;368782;368783;368784;368785;368786 225279;225280;225281;225282;225283;225284;225285;225286;225287;225288;225289;225290;225291;225292;225293;225294;225295;225296;225297;225298;225299;225300;225301;225302;225303;225304;225305;225306;225307;225308;225309;225310;225311;225312;225313;225314;225315;225316;225317;225318;225319;225320;225321;225322;225323;225324;225325;225326;225327;225328;225329;225330;225331;225332;225333;225334;225335;225336;225337;225338;225339;225340;225341 225330 62 THEACIR Unmodified 885.41269 0.41268512 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 8.1085 8.841 2 0.0017774 1844 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.99 117.6 142210000 51410000 41288000 49515000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19847 1888 19225 368787;368788;368789 225342;225343;225344 225344 3 THEQTTAAER Unmodified 1142.5316 0.53161428 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 5.2541 6.1032 2;3 8.0018E-17 1030 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 227.27 224.27 4175700000 103240000 93187000 91609000 0 0 0 911600000 822020000 817710000 0 0 0 109280000 88574000 114180000 0 0 0 353990000 355110000 315200000 0 0 0 19848 669 19226 368790;368791;368792;368793;368794;368795;368796;368797;368798;368799;368800;368801;368802;368803;368804;368805;368806;368807;368808;368809;368810;368811;368812;368813 225345;225346;225347;225348;225349;225350;225351;225352;225353;225354;225355;225356;225357;225358;225359;225360;225361 225354 16 THFTSGGELDK Unmodified 1190.5568 0.5567664 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.172 13.004 2 3.5975E-14 3634 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 208.11 194.73 1302200000 108200000 113020000 104480000 0 0 0 134200000 116160000 116480000 0 0 0 104670000 92129000 93958000 0 0 0 111750000 102960000 104160000 0 0 0 19849 1132 19227 368814;368815;368816;368817;368818;368819;368820;368821;368822;368823;368824;368825 225362;225363;225364 225362 3 THGLNPNNLNK Unmodified 1220.6262 0.62618337 414 P0A8A4 ppsR Phosphoenolpyruvate synthase regulatory protein yes yes 0 0 0 By MS/MS 1 11.793 12.644 2 0.0013252 3476 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.489 59.702 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19850 414 19228 368826 225365 225365 1 THGLSNEER Unmodified 1041.4839 0.4839358 675 P0ABS5 dnaG DNA primase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 8.2329 9.0004 2 0.13949 1889 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 39.022 32.983 10958000 2473700 2071000 2051300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1360600 1554500 1446600 0 0 0 19851 675 19229 368827;368828;368829;368830;368831;368832 225366;225367;225368 225366 3 THGQPATPSTIGK Unmodified 1293.6677 0.66771383 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.387 12.219 2 1.8078E-18 3209 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 224.49 195.54 732460000 111300000 142970000 129160000 0 0 0 32801000 27738000 28792000 0 0 0 46585000 44800000 45628000 0 0 0 40816000 38892000 42982000 0 0 0 19852 638 19230 368833;368834;368835;368836;368837;368838;368839;368840;368841;368842;368843;368844 225369;225370;225371;225372;225373;225374;225375;225376;225377;225378;225379;225380 225373 12 THGSALFTR Unmodified 988.50903 0.50902834 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.241 13.898 2 8.1747E-05 3888 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 140.84 126.07 973020000 45413000 45606000 53321000 9570100 7531200 9176200 158010000 0 0 3448500 4752200 4448300 155640000 139510000 135460000 0 0 0 191700000 0 0 2857600 3144200 3428600 19853 107 19231 368845;368846;368847;368848;368849;368850;368851;368852;368853;368854;368855;368856;368857;368858;368859;368860;368861 225381;225382;225383;225384;225385;225386;225387;225388;225389;225390;225391;225392;225393;225394;225395;225396 225394 15 THGVDTDYPLDHEFITGGEYR Unmodified 2421.0873 0.087318043 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 33.665 32.278 3;4 1.3016E-34 15671 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 206.28 203.4 2292000000 162420000 175260000 150380000 0 0 0 195850000 168820000 157910000 35356000 28770000 21983000 161780000 147140000 149190000 15012000 10651000 11224000 220750000 238130000 228130000 0 13215000 0 19854 883 19232 368862;368863;368864;368865;368866;368867;368868;368869;368870;368871;368872;368873;368874;368875;368876;368877;368878;368879;368880;368881;368882;368883;368884;368885;368886;368887;368888;368889;368890;368891;368892;368893;368894;368895;368896;368897;368898;368899;368900 225397;225398;225399;225400;225401;225402;225403;225404;225405;225406;225407;225408;225409;225410;225411;225412;225413;225414;225415;225416;225417;225418;225419;225420;225421;225422;225423;225424;225425;225426;225427;225428 225406 32 THGVDTDYPLDHEFITGGEYRR Unmodified 2577.1884 0.18842907 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 2 3 2 1 2 2 1 2 2 28.978 27.543 3;4;5 4.0963E-15 10741 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 138.04 138.04 172620000 0 0 0 5337200 6133400 3557200 0 0 0 21376000 41291000 26850000 0 0 0 7732300 14198000 11143000 0 0 0 9679500 12672000 12655000 19855 883 19233 368901;368902;368903;368904;368905;368906;368907;368908;368909;368910;368911;368912;368913;368914;368915;368916;368917;368918;368919;368920;368921;368922 225429;225430;225431;225432;225433;225434;225435;225436 225432 7 THHQPVR Unmodified 873.45693 0.45693319 1245 P24224 acpS Holo-[acyl-carrier-protein] synthase yes yes 0 0 0 By MS/MS By MS/MS 1 1 6.1905 6.9378 2 0.0064974 1176 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 90.939 82.346 2406700 0 0 2406700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19856 1245 19234 368923;368924 225437;225438 225437 1 THIVHLPDAIAR Unmodified 1341.7517 0.75171823 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 2 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 20.517 20.775 2;3 0.00088334 8060 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 66.538 41.101 322910000 51285000 66732000 48276000 3684200 3137800 4289300 29049000 32589000 33484000 8286300 5493800 4076200 8345300 7519800 4874400 0 0 0 11792000 0 0 0 0 0 19857 1377 19235 368925;368926;368927;368928;368929;368930;368931;368932;368933;368934;368935;368936;368937;368938;368939;368940;368941;368942;368943 225439;225440;225441;225442;225443;225444;225445;225446;225447;225448;225449;225450;225451 225449 11 THLASNLAEFLNQLKPLL Unmodified 2021.131 0.13096118 459 P0A8U0 syd Protein Syd yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.153 53.68 3 7.5962E-05 26752 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 74.428 70.767 105890000 14244000 10941000 11818000 0 0 0 9842000 6238000 7099200 0 0 0 6060400 9012200 7596900 0 0 0 7627200 5701600 9712200 0 0 0 19858 459 19236 368944;368945;368946;368947;368948;368949;368950;368951;368952;368953;368954;368955 225452 225452 1 THLHTLSLVAK Unmodified 1218.7085 0.70845643 1751 P69829 ptsN Nitrogen regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 15.211 16.026 2;3 1.5598E-14 5129 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 240.38 182.42 1386500000 160230000 108230000 133170000 0 0 558240 76881000 95343000 96668000 0 0 0 90459000 88686000 95653000 0 0 0 143250000 144740000 152620000 0 0 0 19859 1751 19237 368956;368957;368958;368959;368960;368961;368962;368963;368964;368965;368966;368967;368968;368969;368970;368971;368972;368973;368974;368975;368976;368977;368978;368979;368980 225453;225454;225455;225456;225457;225458;225459;225460;225461;225462;225463;225464;225465;225466;225467;225468;225469;225470;225471;225472;225473;225474;225475 225470 23 THLLHAVGNGIMAR Unmodified 1488.7984 0.79835085 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 18.865 18.931 3 0.00014855 5781 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 78.964 65.247 23296000 0 2356300 0 1113800 0 0 0 0 0 4431700 4361200 4533700 0 0 0 0 0 0 0 0 0 2926300 2027600 1545900 19860 78 19238 368981;368982;368983;368984;368985;368986;368987;368988 225476;225477 225477 2 THLLQPGGLNTTSVK Unmodified 1564.8573 0.85730551 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 21.568 21.684 2;3 7.6868E-15 8750 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 182.23 172.9 908370000 187560000 172980000 143490000 0 0 0 61557000 77864000 70331000 0 0 0 29105000 23502000 23940000 0 0 0 39341000 41294000 37401000 0 0 0 19861 1091 19239 368989;368990;368991;368992;368993;368994;368995;368996;368997;368998;368999;369000;369001;369002;369003;369004;369005;369006;369007;369008;369009;369010;369011;369012 225478;225479;225480;225481;225482;225483;225484;225485;225486;225487;225488;225489;225490;225491;225492;225493;225494;225495 225487 18 THLQDATPLTLGQEISGWVAMLEHNLK Unmodified 3001.5331 0.53314119 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 55.556 54.12 3;4 4.7413E-31 27015 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 190.19 184.34 435580000 86793000 82994000 103120000 2076300 2123300 2282600 17479000 13464000 16118000 0 0 0 8519500 13151000 13972000 0 0 0 36153000 18820000 18508000 0 0 0 19862 106 19240 369013;369014;369015;369016;369017;369018;369019;369020;369021;369022;369023;369024;369025;369026;369027;369028;369029;369030;369031;369032;369033 225496;225497;225498;225499;225500 225496 5 THLTEDVINAAEK Unmodified 1439.7256 0.72562264 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 2 1 2 2 1 1 1 1 2 2 1 22.143 22.121 2;3 2.5169E-62 9018 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 336.34 330.69 1346800000 296210000 247250000 249920000 1874600 1635400 948770 90872000 97248000 57038000 0 0 0 36538000 32096000 34481000 0 0 0 67362000 75697000 57669000 0 0 0 19863 555 19241 369034;369035;369036;369037;369038;369039;369040;369041;369042;369043;369044;369045;369046;369047;369048;369049;369050;369051;369052;369053;369054;369055;369056;369057 225501;225502;225503;225504;225505;225506;225507;225508;225509;225510;225511;225512;225513;225514;225515;225516;225517;225518 225511 17 THLVSPAMAAAAAVTGHFADIR Unmodified 2206.1317 0.13170624 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 43.926 42.577 3;4 1.1622E-21 20745 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 158.73 150.44 203450000 59836000 68943000 58729000 0 0 0 0 0 0 0 0 0 4088000 5338000 0 0 0 0 0 6513500 0 0 0 0 19864 225 19242 369058;369059;369060;369061;369062;369063;369064;369065;369066 225519;225520;225521;225522 225519 4 THMAVHPMGK Unmodified 1107.5318 0.53175439 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.001 11.794 2 0.00059041 2983 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.143 72.91 118500000 11110000 12185000 16804000 0 0 0 13519000 14077000 14908000 0 0 0 0 3173200 0 0 0 0 13371000 10928000 8428300 0 0 0 19865 1429 19243 369067;369068;369069;369070;369071;369072;369073;369074;369075;369076 225523;225524 225523 2 THNAGVK Unmodified 725.38204 0.38203692 1481 P37647 kdgK 2-dehydro-3-deoxygluconokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 4.678 5.5231 2 0.0060543 794 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 97.075 89.251 311330000 25442000 21664000 20576000 0 0 0 53389000 44392000 33714000 0 0 0 16106000 12465000 12524000 0 0 0 24554000 22297000 24210000 0 0 0 19866 1481 19244 369077;369078;369079;369080;369081;369082;369083;369084;369085;369086;369087;369088;369089;369090;369091 225525;225526;225527;225528;225529;225530;225531;225532 225526 8 THNDYYYSVR Unmodified 1316.5786 0.57856447 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 15.091 16.029 2 0.00055004 5475 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.775 92.519 23602000 0 0 0 0 0 0 0 0 0 0 0 0 2808800 2006900 1452600 0 0 0 6068800 5165200 6099600 0 0 0 19867 1055 19245 369092;369093;369094;369095;369096;369097 225533;225534 225533 2 THNLEPYFESFINNLR Unmodified 1992.9694 0.96937516 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 1 1 2 2 2 51.209 50.032 2;3 1.8596E-18 20373 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 228.61 225.66 1452700000 0 0 0 11639000 10364000 15666000 0 0 0 342260000 365270000 328750000 0 0 0 15823000 20831000 13356000 0 0 0 122060000 120100000 86551000 + 19868 11 19246 369098;369099;369100;369101;369102;369103;369104;369105;369106;369107;369108;369109;369110;369111;369112;369113;369114;369115;369116 225535;225536;225537;225538;225539;225540;225541;225542;225543;225544;225545;225546;225547;225548;225549;225550;225551;225552;225553 225539 19 THNLEPYFESFINNLRR Unmodified 2149.0705 0.070486187 11 CON__P04264 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 1 1 1 3 3 3 46.592 45.037 3;4 1.61E-14 18152 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 161.84 160.94 190230000 0 0 0 8873200 5712600 9184700 0 0 0 36648000 35684000 38102000 0 0 0 2754200 2450900 4354600 0 0 0 15540000 15827000 15097000 + 19869 11 19247 369117;369118;369119;369120;369121;369122;369123;369124;369125;369126;369127;369128;369129;369130;369131;369132;369133;369134;369135;369136;369137;369138;369139;369140;369141 225554;225555;225556;225557;225558;225559;225560;225561;225562;225563;225564;225565;225566;225567;225568;225569 225561 13 THNQGVFDVYTPDILR Unmodified 1873.9323 0.93226137 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 42.019 40.307 2;3 5.5919E-40 19591 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 329.38 319.33 28529000000 1119300000 1054600000 905050000 15568000 14328000 14582000 3845900000 3891600000 3563500000 39205000 37514000 33516000 2645200000 2811900000 2559600000 29631000 22599000 24200000 1846700000 2034800000 1967400000 16824000 17723000 17327000 19870 212 19248 369142;369143;369144;369145;369146;369147;369148;369149;369150;369151;369152;369153;369154;369155;369156;369157;369158;369159;369160;369161;369162;369163;369164;369165;369166;369167;369168;369169;369170;369171;369172;369173;369174;369175;369176;369177;369178;369179;369180;369181;369182;369183;369184;369185;369186 225570;225571;225572;225573;225574;225575;225576;225577;225578;225579;225580;225581;225582;225583;225584;225585;225586;225587;225588;225589;225590;225591;225592;225593;225594;225595;225596;225597;225598;225599;225600;225601;225602;225603;225604;225605 225590 36 THPVIYNVCNYQK Unmodified 1634.7875 0.78751139 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 19.941 20.427 3 0.0002348 7887 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 62.088 57.366 28848000 6045000 4768700 5359700 0 0 0 2668400 0 0 0 0 0 0 0 0 0 0 0 3074800 4204800 2726700 0 0 0 19871 1233 19249 369187;369188;369189;369190;369191;369192;369193 225606 225606 1 THSEVLEAVK Unmodified 1111.5873 0.58733824 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.408 14.273 3 0.069025 4444 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 30.06 22.172 379750000 24740000 20842000 22322000 0 0 0 49974000 44811000 46739000 0 0 0 27965000 24976000 30259000 0 0 0 29723000 30162000 27233000 0 0 0 19872 1252 19250 369194;369195;369196;369197;369198;369199;369200;369201;369202;369203;369204;369205 225607 225607 0 THTALEYK Unmodified 961.4869 0.48689592 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.669 12.343 2 3.5438E-09 3055 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 209.37 193.74 377380000 0 32902000 29727000 5215000 5822200 0 30459000 33952000 30943000 10315000 10455000 11164000 0 23386000 32141000 4099900 0 0 62411000 0 54386000 0 0 0 19873 862 19251 369206;369207;369208;369209;369210;369211;369212;369213;369214;369215;369216;369217;369218;369219;369220 225608;225609;225610;225611;225612;225613;225614;225615;225616;225617 225617 8 THTASGLVER Unmodified 1069.5516 0.55162144 317 P0A784 orn Oligoribonuclease yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.214 12.046 2 0.0002692 3076 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.89 93.594 925690000 85194000 85407000 72518000 0 0 0 77833000 80898000 81923000 0 0 0 77093000 60406000 66336000 0 0 0 81588000 75700000 80788000 0 0 0 19874 317 19252 369221;369222;369223;369224;369225;369226;369227;369228;369229;369230;369231;369232 225618;225619;225620;225621;225622;225623;225624;225625;225626;225627 225618 9 THTGNYEQWIANYQQTLR Unmodified 2222.0505 0.050479026 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 38.332 36.65 3 1.7025E-22 17682 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.82 144.25 3212400000 117380000 96491000 87588000 0 0 0 325780000 307720000 311530000 0 0 0 37875000 303550000 303760000 0 0 0 619160000 584940000 116660000 0 0 0 19875 1244 19253 369233;369234;369235;369236;369237;369238;369239;369240;369241;369242;369243;369244;369245;369246;369247;369248;369249;369250;369251;369252;369253;369254;369255 225628;225629;225630;225631;225632;225633;225634;225635;225636;225637 225633 10 THVINVSHHLR Unmodified 1311.716 0.71600143 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.282 12.042 3 0.11505 3208 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 25.701 25.055 169050000 13795000 19173000 0 2710600 3095500 3494600 11617000 9665100 0 11529000 17097000 11366000 7331300 6879200 8262600 0 0 0 17797000 11812000 13426000 0 0 0 19876 1083 19254 369256;369257;369258;369259;369260;369261;369262;369263;369264;369265;369266;369267;369268;369269;369270;369271 225638 225638 0 THVLAVNGEIYNHQALR Unmodified 1934.0122 0.012243026 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 1 1 2 2 2 2 2 2 1 2 1 2 22.308 22.044 3;4 2.9122E-31 9356 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 227.89 227.89 360830000 45096000 36952000 29249000 1794200 1026400 917120 77254000 66779000 62709000 5910200 4818100 4487800 0 2995900 0 0 0 0 8012300 5468400 7359100 0 0 0 19877 1191 19255 369272;369273;369274;369275;369276;369277;369278;369279;369280;369281;369282;369283;369284;369285;369286;369287;369288;369289;369290;369291;369292;369293;369294;369295;369296;369297;369298;369299 225639;225640;225641;225642;225643;225644;225645;225646 225641 8 THYTLALTGK Unmodified 1103.5975 0.597509 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 18.463 18.899 2;3 2.826E-06 7100 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 134.25 105.29 726760000 131770000 130730000 110140000 0 0 0 78184000 75242000 65665000 5042200 4038200 3092600 12888000 13986000 18570000 0 0 0 27432000 24865000 25114000 0 0 0 19878 1194 19256 369300;369301;369302;369303;369304;369305;369306;369307;369308;369309;369310;369311;369312;369313;369314;369315;369316;369317;369318;369319;369320;369321;369322;369323;369324;369325;369326;369327;369328;369329 225647;225648;225649;225650;225651;225652;225653;225654;225655;225656;225657;225658;225659;225660;225661;225662;225663;225664;225665;225666 225655 20 TIADKQADTNQEQAK Unmodified 1659.8064 0.80639216 1732 P69428 tatA Sec-independent protein translocase protein TatA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 16.992 17.438 3 0.10221 2150 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 22.154 18.702 65599000 0 0 0 0 0 0 11589000 11646000 10789000 0 5047300 0 0 0 0 0 0 0 8359300 8840900 9327100 0 0 0 19879 1732 19257 369330;369331;369332;369333;369334;369335;369336 225667;225668 225667 2 TIAELER Unmodified 830.44978 0.44978213 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.978 17.582 2 0.0010319 5982 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 138.37 105.9 1324500000 14625000 13521000 13214000 0 0 0 167760000 167130000 164260000 0 0 0 77350000 76847000 64899000 3191100 2850400 2690000 204520000 178470000 173130000 0 0 0 19880 531 19258 369337;369338;369339;369340;369341;369342;369343;369344;369345;369346;369347;369348;369349;369350;369351 225669;225670;225671;225672;225673;225674;225675;225676;225677;225678 225676 10 TIAELVEQFNLPIEK Unmodified 1742.9455 0.94545182 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.627 53.179 2;3 2.1956E-27 26111 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 290.66 276.75 2864100000 243350000 237860000 237750000 0 0 0 205580000 199320000 188450000 0 0 0 247330000 245150000 241780000 0 0 0 259340000 269180000 289030000 0 0 0 19881 1120 19259 369352;369353;369354;369355;369356;369357;369358;369359;369360;369361;369362;369363;369364;369365;369366;369367;369368;369369;369370;369371;369372;369373;369374;369375 225679;225680;225681;225682;225683;225684;225685;225686;225687;225688;225689;225690;225691;225692;225693;225694;225695;225696;225697;225698;225699 225684 21 TIAGEIGSSTMPHK Unmodified 1427.7079 0.70786408 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 2 2 2 1 1 2 2 2 19.193 19.729 2;3 0.0001333 7610 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 67.115 66.509 1654800000 80220000 84309000 82361000 0 1126200 1313300 27413000 24673000 28839000 0 0 0 260720000 259260000 200630000 0 453640 416670 56133000 260720000 286220000 0 0 0 19882 638 19260 369376;369377;369378;369379;369380;369381;369382;369383;369384;369385;369386;369387;369388;369389;369390;369391;369392;369393;369394;369395;369396;369397;369398;369399;369400 225700;225701;225702;225703;225704;225705;225706;225707;225708;225709 225700 7 TIAITPDYSEVAK Unmodified 1406.7293 0.72931103 1157 P19319 narZ Respiratory nitrate reductase 2 alpha chain yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 32.283 30.919 2 0.13346 14648 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 36.303 22.534 20561000 0 9223900 6121000 1935100 1784100 1496700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19883 1157 19261 369401;369402;369403;369404;369405 225710 225710 1 TIAIVIGTHGWAAEQLLK Unmodified 1920.0833 0.083282705 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 2 2 2 2 2 3 1 2 1 1 2 2 2 1 1 1 2 1 46.818 45.443 2;3 5.9413E-29 18654 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 209.22 206.09 579790000 4418300 4083000 5807900 4654400 4992000 7814600 31206000 36682000 24854000 100750000 87485000 94077000 11380000 13115000 9396400 13104000 23789000 25220000 15566000 11479000 11300000 10677000 18508000 9434000 19884 1745 19262 369406;369407;369408;369409;369410;369411;369412;369413;369414;369415;369416;369417;369418;369419;369420;369421;369422;369423;369424;369425;369426;369427;369428;369429;369430;369431;369432;369433;369434;369435;369436;369437;369438;369439;369440;369441;369442;369443 225711;225712;225713;225714;225715;225716;225717;225718;225719;225720;225721;225722;225723;225724;225725;225726;225727;225728;225729;225730;225731;225732;225733;225734;225735 225715 24 TIALELQQLK Unmodified 1155.6863 0.68632401 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.42 35.556 2 0.00071946 17475 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 88.948 85.97 141300000 8649900 7497900 7258200 532380 0 596570 16208000 16792000 14939000 3447800 2537800 2619600 6085100 8501400 8783900 0 0 0 11116000 13652000 9076200 660180 1030300 1317800 19885 1447 19263 369444;369445;369446;369447;369448;369449;369450;369451;369452;369453;369454;369455;369456;369457;369458;369459;369460;369461;369462;369463 225736;225737;225738;225739;225740 225737 5 TIALELQQLKK Unmodified 1283.7813 0.78128702 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 28.792 26.931 3 0.13711 10430 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 25.016 25.016 22642000 0 0 0 1235600 1349600 0 0 0 0 7675600 5801800 6579700 0 0 0 0 0 0 0 0 0 0 0 0 19886 1447 19264 369464;369465;369466;369467;369468 225741 225741 1 TIAMGSSDGLR Unmodified 1106.539 0.53900784 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.378 20.568 2 8.3001E-08 8053 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 174.41 126.56 5761000000 143000000 141840000 134480000 7127900 7894900 8833000 558250000 557560000 540580000 45503000 45062000 37199000 598340000 467340000 471350000 5786100 0 3629700 618210000 637000000 638740000 33134000 30269000 29867000 19887 646 19265 369469;369470;369471;369472;369473;369474;369475;369476;369477;369478;369479;369480;369481;369482;369483;369484;369485;369486;369487;369488;369489;369490;369491 225742;225743;225744;225745;225746;225747;225748;225749;225750;225751;225752;225753;225754;225755;225756;225757;225758;225759;225760;225761;225762;225763;225764;225765 225758 24 TIAMGSSDGLRR Unmodified 1262.6401 0.64011887 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 3 2 2 1 4 2 2 1 2 1 2 2 2 2 2 3 2 3 15.036 15.484 2;3 3.7845E-06 4266 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 138.1 115.03 1324100000 0 0 11106000 38909000 35732000 42270000 0 6069500 2179000 232780000 211650000 198900000 2771500 3915500 1611400 30644000 21588000 23544000 5803000 0 5156100 151950000 153330000 144130000 19888 646 19266 369492;369493;369494;369495;369496;369497;369498;369499;369500;369501;369502;369503;369504;369505;369506;369507;369508;369509;369510;369511;369512;369513;369514;369515;369516;369517;369518;369519;369520;369521;369522;369523;369524;369525;369526;369527;369528;369529;369530;369531;369532 225766;225767;225768;225769;225770;225771;225772;225773;225774;225775;225776;225777;225778;225779;225780;225781;225782;225783;225784;225785;225786;225787;225788 225776 23 TIAMGSSDGLRR Oxidation (M) 1278.635 0.63503349 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 1 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.958 12.449 3 0.018059 2837 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 45.915 42.152 62111000 0 0 0 1480300 1413300 1440800 0 0 0 14150000 9695300 8709200 0 0 0 0 964880 0 3528800 0 0 7782600 5631300 7314500 19889 646 19266 369533;369534;369535;369536;369537;369538;369539;369540;369541;369542;369543 225789;225790;225791 225789 353 1 TIANLLTA Unmodified 815.47527 0.4752686 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.683 43.168 2 0.0057635 20873 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.086 76.846 437950000 36033000 32486000 22622000 0 0 0 33809000 28648000 34137000 0 0 0 42664000 42107000 42137000 0 0 0 37739000 42207000 43360000 0 0 0 19890 1456 19267 369544;369545;369546;369547;369548;369549;369550;369551;369552;369553;369554;369555 225792;225793;225794;225795;225796;225797;225798;225799;225800;225801;225802;225803 225800 12 TIAQLEK Unmodified 801.45962 0.45961853 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.351 15.122 2 0.0072956 4924 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.9 57.008 395030000 60247000 65026000 58459000 727810 761300 775310 36568000 33083000 35705000 0 7273600 6570700 11394000 9573800 8446000 0 0 0 13672000 33369000 13380000 0 0 0 19891 1788 19268 369556;369557;369558;369559;369560;369561;369562;369563;369564;369565;369566;369567;369568;369569;369570;369571;369572 225804;225805;225806;225807;225808;225809;225810 225804 7 TIAQQVR Unmodified 814.4661 0.4661009 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.772 12.459 2 0.0028253 3353 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.54 69.615 1137400000 106660000 118940000 109950000 4405400 4524500 3772600 87107000 95182000 96409000 2007000 2065400 3518300 80234000 74502000 74036000 513330 0 334980 87611000 91366000 94214000 0 0 0 19892 1237 19269 369573;369574;369575;369576;369577;369578;369579;369580;369581;369582;369583;369584;369585;369586;369587;369588;369589;369590;369591;369592 225811;225812;225813;225814;225815;225816 225813 6 TIASFQQQLSDMGYK Unmodified 1715.8189 0.8188711 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 4 1 1 1 1 1 2 1 2 2 2 1 2 1 41.272 39.645 2;3 1.2644E-45 19629 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 281.99 259.3 15270000000 4112900000 3865100000 3849400000 3768000 3122100 3205000 428980000 491750000 493270000 0 0 1008500 269770000 220140000 237750000 0 0 0 405300000 434860000 449830000 0 0 0 19893 517 19270 369593;369594;369595;369596;369597;369598;369599;369600;369601;369602;369603;369604;369605;369606;369607;369608;369609;369610;369611;369612;369613;369614;369615;369616;369617;369618;369619;369620;369621;369622;369623 225817;225818;225819;225820;225821;225822;225823;225824;225825;225826;225827;225828;225829;225830;225831;225832;225833;225834;225835;225836 225820 18 TIASFQQQLSDMGYK Oxidation (M) 1731.8138 0.81378572 517 P0A9G6 aceA Isocitrate lyase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 34.665 33.189 2 9.305E-12 16209 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 174.77 173.01 273320000 88842000 85396000 74175000 0 0 0 8431300 8399200 8079600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19894 517 19270 369624;369625;369626;369627;369628;369629;369630;369631;369632 225837;225838;225839;225840;225841;225842;225843;225844;225845;225846;225847 225844 317 10 TIASNAITINGEK Unmodified 1330.7092 0.70924429 1024 P0AGJ9 tyrS Tyrosine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 22.823 22.319 2 1.2594E-07 9016 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 155 131.63 324210000 37075000 32426000 29525000 0 0 0 29362000 24769000 0 0 0 0 27259000 26440000 27435000 0 0 0 27442000 29197000 33279000 0 0 0 19895 1024 19271 369633;369634;369635;369636;369637;369638;369639;369640;369641;369642;369643 225848;225849;225850;225851 225851 4 TIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPK Unmodified 3548.8549 0.85486926 920 P0AF93 ridA 2-iminobutanoate/2-iminopropanoate deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 2 2 3 2 2 2 2 1 2 2 2 2 54.654 53.206 3;4 9.4933E-20 26263 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 154.42 152.76 2816900000 554290000 474000000 420230000 0 0 0 242200000 236240000 221160000 0 0 0 80698000 34758000 87605000 0 0 0 169600000 167060000 129100000 0 0 0 19896 920 19272 369644;369645;369646;369647;369648;369649;369650;369651;369652;369653;369654;369655;369656;369657;369658;369659;369660;369661;369662;369663;369664;369665;369666;369667 225852;225853;225854;225855;225856;225857;225858;225859;225860;225861;225862;225863;225864;225865;225866 225862 15 TIAVYDLGGGTFDISIIEIDEVDGEK Unmodified 2768.3644 0.36438733 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.425 53.944 3 0.0033604 19886 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 43.895 40.972 156410000 0 15697000 13896000 3733600 2379500 0 22152000 20922000 21811000 4413500 0 3817100 11020000 0 0 0 0 0 17341000 19225000 0 0 0 0 19897 293 19273 369668;369669;369670;369671;369672;369673;369674;369675;369676;369677;369678;369679 225867 225867 1 TICFCGR Unmodified 912.39459 0.39459221 1206 P23331 tdk Thymidine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.356 18.971 2 0.0063224 7411 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 95.957 92.565 196830000 10884000 12830000 9091100 0 0 0 18767000 21575000 14968000 0 0 0 15562000 10430000 13203000 0 0 0 23822000 22853000 22849000 0 0 0 19898 1206 19274 369680;369681;369682;369683;369684;369685;369686;369687;369688;369689;369690;369691 225868;225869;225870;225871;225872;225873;225874;225875;225876;225877;225878;225879 225868 10 TIDDLKNQILNLTTDNANILLQIDNAR Unmodified 3051.62 0.62004194 13 CON__P13645 yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 55.2 53.764 3 3.0572E-41 21589 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 215.42 212.48 176630000 0 0 0 18290000 0 24545000 0 0 0 18538000 15540000 17276000 0 0 0 0 0 0 0 0 0 27187000 27789000 27468000 + 19899 13 19275 369692;369693;369694;369695;369696;369697;369698;369699 225880;225881;225882 225881 3 TIDKLAELQER Unmodified 1314.7143 0.71432967 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 2 2 2 2 2 2 21.647 21.407 2;3 0.00036143 7344 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 103.31 101.72 83808000 0 0 0 736920 682600 862410 0 0 0 26086000 6860600 20206000 0 0 0 3776400 3463400 4405300 0 0 0 5332900 5594000 5801100 19900 25 19276 369700;369701;369702;369703;369704;369705;369706;369707;369708;369709;369710;369711;369712;369713;369714;369715;369716;369717;369718;369719 225883;225884;225885;225886;225887;225888;225889;225890;225891;225892 225886 10 TIDLDSGEHLQPTWQGYGQTR Unmodified 2401.1299 0.12985156 1915 P77544 yfcF Glutathione S-transferase YfcF yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 36.294 34.707 3 3.0174E-07 16954 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.96 104.74 106760000 18779000 15358000 12052000 0 0 0 11935000 12068000 12715000 0 0 0 0 6323900 6951700 0 0 0 4997300 5575000 0 0 0 0 19901 1915 19277 369720;369721;369722;369723;369724;369725;369726;369727;369728;369729 225893;225894 225893 2 TIDLGLER Unmodified 915.50255 0.50254598 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 2 2 1 1 1 1 1 1 1 1 1 2 1 29.048 27.802 2 0.0012871 12724 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.12 19.051 271280000 32985000 28167000 31123000 568620 535330 0 16896000 17591000 19028000 0 0 0 19509000 20497000 19774000 0 0 0 0 35708000 28898000 0 0 0 19902 177 19278 369730;369731;369732;369733;369734;369735;369736;369737;369738;369739;369740;369741;369742;369743;369744;369745 225895;225896;225897;225898 225898 4 TIDQLCR Unmodified 904.44365 0.44365089 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 15.395 15.833 2 0.0016502 3875 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 126.24 97.989 46110000 0 0 0 9567700 9539400 9765600 0 0 0 4278700 2482000 2999800 0 0 0 0 0 0 0 0 0 4172500 3304400 0 19903 1899 19279 369746;369747;369748;369749;369750;369751;369752;369753 225899;225900;225901 225901 3 TIEAAEGPYGEEGMIVQQFHPLPK Unmodified 2640.2894 0.28938867 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.802 42.04 3 1.5347E-15 20480 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 150.58 149.58 406760000 0 44070000 37410000 0 0 0 24355000 26688000 32796000 5323700 4143100 3071400 33331000 24706000 26852000 0 0 0 54328000 42909000 43148000 3627000 0 0 19904 806 19280 369754;369755;369756;369757;369758;369759;369760;369761;369762;369763;369764;369765;369766;369767;369768 225902;225903;225904;225905;225906 225904 5 TIEAGMILHQQLLSGAAER Oxidation (M) 2053.0626 0.062623617 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 5 5 6 5 3 2 5 5 6 35.965 34.187 2;3 2.8743E-22 13140 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 183.96 178.48 431890000 0 0 0 0 0 0 0 0 0 69151000 63777000 72718000 0 0 0 41154000 32569000 24527000 0 0 0 43208000 45370000 39412000 19905 1616 19281 369769;369770;369771;369772;369773;369774;369775;369776;369777;369778;369779;369780;369781;369782;369783;369784;369785;369786;369787;369788;369789;369790;369791;369792;369793;369794;369795;369796;369797;369798;369799;369800;369801;369802;369803;369804;369805;369806;369807;369808;369809;369810 225907;225908;225909;225910;225911;225912;225913;225914;225915;225916;225917;225918;225919;225920;225921;225922;225923;225924;225925;225926;225927;225928 225915 571 19 TIEAGMILHQQLLSGAAER Unmodified 2037.0677 0.067708995 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 3 1 1 13 21 19 2 2 2 21 23 23 2 3 19 15 14 45.326 44.146 2;3;4 4.5626E-68 14906 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 313.59 292.75 10054000000 1931400 0 10242000 1451500 0 1464000 11469000 5947500 1876100 1131200000 1145800000 1238900000 2987500 4490500 5457900 1410100000 1063000000 1221300000 5836800 6294900 0 1008000000 962450000 813410000 19906 1616 19281 369811;369812;369813;369814;369815;369816;369817;369818;369819;369820;369821;369822;369823;369824;369825;369826;369827;369828;369829;369830;369831;369832;369833;369834;369835;369836;369837;369838;369839;369840;369841;369842;369843;369844;369845;369846;369847;369848;369849;369850;369851;369852;369853;369854;369855;369856;369857;369858;369859;369860;369861;369862;369863;369864;369865;369866;369867;369868;369869;369870;369871;369872;369873;369874;369875;369876;369877;369878;369879;369880;369881;369882;369883;369884;369885;369886;369887;369888;369889;369890;369891;369892;369893;369894;369895;369896;369897;369898;369899;369900;369901;369902;369903;369904;369905;369906;369907;369908;369909;369910;369911;369912;369913;369914;369915;369916;369917;369918;369919;369920;369921;369922;369923;369924;369925;369926;369927;369928;369929;369930;369931;369932;369933;369934;369935;369936;369937;369938;369939;369940;369941;369942;369943;369944;369945;369946;369947;369948;369949;369950;369951;369952;369953;369954;369955;369956;369957;369958;369959;369960;369961;369962;369963;369964;369965;369966;369967;369968;369969;369970;369971;369972;369973;369974;369975;369976;369977;369978;369979;369980;369981;369982;369983;369984;369985;369986;369987;369988;369989;369990;369991;369992;369993;369994;369995;369996;369997;369998;369999;370000 225929;225930;225931;225932;225933;225934;225935;225936;225937;225938;225939;225940;225941;225942;225943;225944;225945;225946;225947;225948;225949;225950;225951;225952;225953;225954;225955;225956;225957;225958;225959;225960;225961;225962;225963;225964;225965;225966;225967;225968;225969;225970;225971;225972;225973;225974;225975;225976;225977;225978;225979;225980;225981;225982;225983;225984;225985;225986;225987;225988;225989;225990;225991;225992;225993;225994;225995;225996;225997;225998;225999;226000;226001;226002;226003;226004;226005;226006;226007;226008;226009;226010;226011;226012;226013;226014;226015;226016;226017;226018;226019;226020;226021;226022;226023;226024;226025;226026;226027;226028;226029;226030;226031;226032;226033;226034;226035;226036;226037;226038;226039;226040;226041;226042;226043;226044;226045;226046;226047;226048;226049;226050;226051;226052;226053;226054;226055;226056;226057;226058;226059;226060;226061;226062;226063;226064;226065;226066;226067;226068;226069;226070;226071;226072;226073;226074;226075;226076;226077;226078;226079;226080;226081;226082;226083;226084;226085;226086;226087;226088;226089;226090;226091 226015 142 TIEDLNAIESCAR Unmodified 1490.7035 0.70350699 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.422 31.082 2 1.8002E-24 14598 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 245.08 234.84 226370000 10231000 11376000 6762700 0 0 0 15023000 18559000 16602000 0 0 0 22358000 19458000 20988000 0 0 0 25965000 32909000 26139000 0 0 0 19907 180 19282 370001;370002;370003;370004;370005;370006;370007;370008;370009;370010;370011;370012 226092;226093;226094;226095;226096;226097;226098;226099 226094 8 TIEDVFIHLLSDTYSAEK Unmodified 2080.0365 0.036451671 1177 P21362 yciF Protein YciF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 1 1 1 55.333 53.905 2;3 4.344E-110 26531 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 367.86 332.85 1431000000 465960000 411010000 404560000 24010000 18144000 17294000 21792000 17390000 19371000 0 0 0 0 0 0 0 0 0 9235500 9443000 12787000 0 0 0 19908 1177 19283 370013;370014;370015;370016;370017;370018;370019;370020;370021;370022;370023;370024;370025;370026;370027;370028;370029;370030 226100;226101;226102;226103;226104;226105;226106;226107;226108;226109 226109 10 TIENWYLK Unmodified 1065.5495 0.54949617 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.309 31.906 2 0.0031836 15153 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.262 90.69 1127900000 160310000 139980000 3270100 0 0 0 157690000 0 151390000 0 0 0 61849000 74521000 75583000 0 0 0 89609000 93891000 119780000 0 0 0 19909 1154 19284 370031;370032;370033;370034;370035;370036;370037;370038;370039;370040;370041;370042 226110;226111;226112;226113;226114;226115;226116;226117;226118;226119;226120 226116 11 TIEQRPLVVLQEIPEGNFFGK Unmodified 2413.3005 0.3005457 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.779 49.555 3 5.6516E-07 24482 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 101.17 100.04 414400000 12670000 11769000 10251000 7553300 0 7034200 13081000 15243000 16415000 21586000 22522000 18854000 21883000 24989000 25820000 0 6541900 9705800 40093000 43967000 39654000 12959000 13480000 18326000 19910 844 19285 370043;370044;370045;370046;370047;370048;370049;370050;370051;370052;370053;370054;370055;370056;370057;370058;370059;370060;370061;370062;370063;370064 226121;226122;226123;226124;226125;226126;226127;226128;226129;226130;226131;226132;226133;226134;226135;226136;226137 226127 17 TIESLPEDLR Unmodified 1171.6085 0.60846762 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.694 29.315 2 1.9104E-05 10405 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 149.94 139.86 757390000 6540000 0 0 1963700 2086100 1607600 0 0 12506000 3025500 2524400 2088800 0 0 6071100 275710000 189260000 211100000 13605000 12707000 14025000 1262600 1299700 0 19911 1005 19286 370065;370066;370067;370068;370069;370070;370071;370072;370073;370074;370075;370076;370077;370078;370079;370080;370081 226138;226139;226140;226141;226142;226143;226144;226145;226146 226139 8 TIETIGPVK Unmodified 956.55425 0.5542472 1274 P25798 fliF Flagellar M-ring protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 20.901 21.229 2 0.0050505 6216 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 75.854 62.346 12860000 2736700 3714100 0 1938400 2064300 2406600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19912 1274 19287 370082;370083;370084;370085;370086 226147 226147 1 TIEVDDELYSYIASHTK Unmodified 1982.9473 0.94730231 972 P0AFY8 seqA Negative modulator of initiation of replication yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 44.688 44.81 3 4.1727E-05 16014 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 82.248 81.216 15757000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5663000 4067900 6026300 0 0 0 0 0 0 19913 972 19288 370087;370088;370089 226148;226149 226149 2 TIEWLNYIATELHK Unmodified 1729.9039 0.90392136 510 P0A9D2 gstA Glutathione S-transferase GstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 2 52.875 51.535 2;3 5.3576E-09 25427 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 154.47 152.11 1125400000 154410000 155870000 129560000 0 0 0 127370000 120450000 103930000 1929900 2682400 1516000 51313000 49696000 45176000 0 0 0 47581000 49749000 48787000 8818700 13523000 13056000 19914 510 19289 370090;370091;370092;370093;370094;370095;370096;370097;370098;370099;370100;370101;370102;370103;370104;370105;370106;370107;370108;370109;370110;370111;370112;370113;370114;370115;370116;370117;370118;370119;370120 226150;226151;226152;226153;226154;226155;226156;226157;226158;226159;226160;226161;226162;226163;226164;226165;226166;226167;226168;226169 226152 19 TIFCTFLQR Unmodified 1184.6012 0.60121417 451 P0A8P3 yggX Probable Fe(2+)-trafficking protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.021 40.139 2 1.0489E-07 19903 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.68 174.74 1568800000 144480000 135360000 127800000 0 2571900 2996200 120220000 130030000 139790000 6360300 6109200 5191700 92742000 88431000 90067000 0 0 0 173060000 167460000 131800000 2417300 0 1900700 19915 451 19290 370121;370122;370123;370124;370125;370126;370127;370128;370129;370130;370131;370132;370133;370134;370135;370136;370137;370138;370139 226170;226171;226172;226173;226174;226175;226176;226177;226178;226179;226180;226181 226173 11 TIFGEAASR Unmodified 950.48214 0.48214489 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.028 20.457 2 9.7622E-05 8087 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 136.75 85.787 3514100000 157000000 126770000 128570000 1956100 2047000 2208500 401360000 326350000 367320000 0 0 0 353610000 309300000 262700000 0 0 0 366280000 349950000 358720000 0 0 0 19916 596 19291 370140;370141;370142;370143;370144;370145;370146;370147;370148;370149;370150;370151;370152;370153;370154 226182;226183;226184;226185;226186;226187;226188 226183 7 TIGDAVAHLK Unmodified 1023.5713 0.57129425 1021 P0AGJ2 trmH tRNA (guanosine(18)-2'-O)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 19.33 19.857 2 0.012615 7626 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 63.673 56.002 50306000 6477300 5474500 5349000 0 0 0 0 0 2045300 0 0 0 5490900 4847200 3516600 0 0 0 6241000 5342600 4854600 0 0 666540 19917 1021 19292 370155;370156;370157;370158;370159;370160;370161;370162;370163;370164;370165 226189;226190;226191;226192;226193;226194;226195 226191 6 TIGFFIANEVSPR Unmodified 1449.7616 0.76161421 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 46.149 44.63 2 1.4591E-05 22237 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.76 128.53 128220000 0 0 0 0 0 0 35588000 25971000 32798000 0 0 0 8277800 8876100 7258200 0 0 0 3827300 2780800 2847400 0 0 0 19918 1276 19293 370166;370167;370168;370169;370170;370171;370172;370173;370174 226196;226197;226198;226199;226200;226201 226196 6 TIGFPTANVPLR Unmodified 1284.719 0.71902112 983 P0AG40 ribF Riboflavin biosynthesis protein RibF;Riboflavin kinase;FMN adenylyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.194 37.52 2 8.6747E-05 18195 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.3 108.38 189870000 23772000 20651000 20402000 0 0 0 12347000 13274000 12365000 0 0 0 11930000 11026000 10873000 0 0 0 14880000 21263000 17084000 0 0 0 19919 983 19294 370175;370176;370177;370178;370179;370180;370181;370182;370183;370184;370185;370186 226202 226202 1 TIGFPTANVPLRR Unmodified 1440.8201 0.82013215 983 P0AG40 ribF Riboflavin biosynthesis protein RibF;Riboflavin kinase;FMN adenylyltransferase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 30.943 29.498 3 0.13544 13326 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 28.327 24.61 37083000 7278300 0 0 0 280980 0 0 5540600 6329400 0 0 0 6518300 0 0 0 0 0 5632400 0 5502700 0 0 0 19920 983 19295 370187;370188;370189;370190;370191;370192;370193 226203;226204;226205 226205 0 TIGLYNSK Unmodified 894.48108 0.48108226 637 P0AB83 nth Endonuclease III yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 18.199 18.394 2 0.0093275 5126 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 80.229 71.899 17866000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1548200 3849700 6634800 5833700 0 0 0 0 0 0 19921 637 19296 370194;370195;370196;370197 226206;226207 226207 2 TIGVISHVEAMK Unmodified 1283.6908 0.69075746 1090 P13458 sbcC Nuclease SbcCD subunit C yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 24.946 23.608 3 0.1034 8739 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 35.006 25.899 4660400 0 0 0 0 0 345590 0 0 949180 2082800 0 0 0 0 0 0 0 0 0 0 0 1282800 0 0 19922 1090 19297 370198;370199;370200;370201 226208 226208 0 TIHEVLDMTIEEAR Unmodified 1655.8189 0.8188711 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 2 1 2 2 1 2 2 2 2 1 1 2 2 2 1 2 2 36.153 34.544 2;3 1.1754E-05 11662 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 89.629 85.314 2870700000 391630000 409160000 349260000 8904800 6840500 7418900 117330000 114230000 106960000 23461000 24005000 17027000 162940000 179620000 175640000 5198600 7871700 6242400 208970000 238850000 251600000 16518000 19072000 21950000 19923 222 19298 370202;370203;370204;370205;370206;370207;370208;370209;370210;370211;370212;370213;370214;370215;370216;370217;370218;370219;370220;370221;370222;370223;370224;370225;370226;370227;370228;370229;370230;370231;370232;370233;370234;370235;370236;370237;370238;370239;370240 226209;226210;226211;226212;226213;226214;226215;226216;226217;226218 226211 7 TIHEVLDMTIEEAREFFDAVPALAR Unmodified 2872.4429 0.4429292 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By MS/MS By MS/MS 2 2 1 55.622 55.666 3;4 8.7584E-11 20935 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 130.71 127.59 98241000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34755000 45821000 17665000 0 0 0 0 0 0 19924 222 19299 370241;370242;370243;370244;370245 226219;226220;226221 226219 3 TIHLGENYGNK Unmodified 1244.6149 0.61494998 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.115 14.952 2 5.4044E-06 4917 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.11 147.46 166190000 17702000 15567000 18142000 0 0 0 18900000 18609000 20928000 0 0 0 6876300 5980400 5209100 0 0 0 11409000 13507000 13363000 0 0 0 19925 1282 19300 370246;370247;370248;370249;370250;370251;370252;370253;370254;370255;370256;370257 226222;226223;226224;226225 226224 4 TIHSFDPCMACAVHVVDADGNEVVSVK Unmodified 2956.3517 0.3517477 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 2 2 2 2 1 2 39.176 37.376 3;4 1.1237E-22 18158 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 167.1 167.1 981420000 4273900 6189300 0 0 0 0 40069000 53069000 47678000 0 0 4590100 85621000 83970000 65623000 0 0 0 167770000 157650000 195410000 22908000 20436000 26164000 19926 723 19301 370258;370259;370260;370261;370262;370263;370264;370265;370266;370267;370268;370269;370270;370271;370272;370273;370274;370275;370276;370277;370278;370279;370280;370281;370282;370283 226226;226227;226228;226229;226230;226231;226232;226233;226234;226235;226236;226237;226238;226239;226240;226241;226242 226232 17 TIHTCNAPSPAATSAIPIGAHIVSK Unmodified 2513.306 0.30604179 1466 P37339 lhgO L-2-hydroxyglutarate oxidase LhgO yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 27.635 26.385 4 0.1553 8794 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 15.469 14.087 19531000 10037000 0 0 0 0 3077400 0 4326400 0 0 0 0 0 0 0 0 0 0 0 2090900 0 0 0 0 19927 1466 19302 370284;370285;370286;370287 226243 226243 1 TIIDDLGEK Unmodified 1002.5233 0.523341 1618 P60340 truB tRNA pseudouridine synthase B yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.088 27.61 2 0.038209 12323 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 57.59 49.878 89699000 11395000 0 8007300 0 0 0 0 0 0 1818300 1126000 1475100 13361000 12746000 11260000 0 0 0 0 13802000 13119000 1588900 0 0 19928 1618 19303 370288;370289;370290;370291;370292;370293;370294;370295;370296;370297;370298 226244;226245;226246 226245 1 TIIDIMEMYHALHVSWSNLQDQQSIDER Unmodified 3371.5915 0.5914607 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.548 53.111 4 1.1059E-22 25109 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 162.75 162.06 1317400000 163930000 164480000 163080000 2923100 0 0 120880000 132480000 121090000 0 0 0 83035000 76429000 67851000 0 0 0 71374000 72289000 77549000 0 0 0 19929 468 19304 370299;370300;370301;370302;370303;370304;370305;370306;370307;370308;370309;370310;370311 226247;226248;226249;226250;226251;226252;226253;226254;226255;226256;226257 226256 11 TIIGDDVFVGSDTQLVAPVTVGK Unmodified 2330.2369 0.23694239 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 1 52.237 50.962 2;3 2.9712E-28 24819 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 184.48 170.45 384930000 31621000 31620000 26854000 0 0 0 45533000 40268000 41002000 0 0 0 20622000 23934000 24408000 0 0 0 36192000 31939000 30942000 0 0 0 19930 720 19305 370312;370313;370314;370315;370316;370317;370318;370319;370320;370321;370322;370323;370324;370325;370326;370327;370328;370329 226258;226259;226260;226261;226262;226263;226264;226265;226266;226267;226268;226269;226270 226263 13 TIIGFGSPNK Unmodified 1032.5604 0.56039521 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 26.813 25.766 2 4.4357E-05 11137 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 138.54 126.35 6743700000 276990000 293720000 240030000 0 0 0 595760000 575470000 620820000 0 0 706190 661530000 626190000 659730000 848680 803110 0 709680000 762970000 717560000 0 892430 0 19931 1299 19306 370330;370331;370332;370333;370334;370335;370336;370337;370338;370339;370340;370341;370342;370343;370344;370345;370346 226271;226272;226273;226274;226275;226276;226277;226278;226279;226280;226281;226282;226283 226282 9 TIIHLLKPQPR Unmodified 1314.8136 0.81359021 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 17.828 18.477 3 0.00068648 6737 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 82.029 82.029 153750000 0 8136700 8514200 0 0 0 9811400 13069000 11096000 0 0 0 11668000 11801000 16989000 0 0 0 23375000 20013000 19276000 0 0 0 19932 194 19307 370347;370348;370349;370350;370351;370352;370353;370354;370355;370356;370357 226284;226285;226286;226287 226286 0 TIIMPVDVFEMELSDK Unmodified 1865.9155 0.9154736 1512 P39177 uspG Universal stress protein G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 55.277 53.832 2;3 7.2675E-10 26378 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 179.6 174.43 1725900000 43112000 44927000 48245000 52574000 59550000 50632000 252280000 244710000 215890000 43582000 45960000 49080000 121220000 119880000 123270000 0 0 0 41946000 50881000 50782000 19309000 24487000 23568000 19933 1512 19308 370358;370359;370360;370361;370362;370363;370364;370365;370366;370367;370368;370369;370370;370371;370372;370373;370374;370375;370376;370377;370378;370379;370380;370381;370382;370383;370384;370385;370386;370387;370388;370389;370390;370391;370392;370393;370394;370395;370396 226288;226289;226290;226291;226292;226293;226294;226295;226296;226297;226298;226299;226300;226301;226302;226303;226304;226305;226306 226297 19 TILDVGCGSGYHMWR Unmodified 1750.7919 0.79194484 1848 P76291 cmoB tRNA (mo5U34)-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.669 35.042 3 0.00021292 17259 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 73.91 73.91 109140000 12367000 7178000 6775100 0 0 0 10210000 10420000 10630000 0 0 0 6281900 6360600 7895700 0 0 0 7954000 12225000 10838000 0 0 0 19934 1848 19309 370397;370398;370399;370400;370401;370402;370403;370404;370405;370406;370407;370408 226307 226307 0 TILEELGEIAFWK Unmodified 1547.8235 0.82354577 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.602 54.129 3 2.3953E-05 25735 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 75.479 70.764 204180000 22504000 19005000 21875000 0 0 0 16841000 9431700 13520000 0 0 0 17628000 19300000 14461000 0 0 0 20001000 13681000 15929000 0 0 0 19935 1076 19310 370409;370410;370411;370412;370413;370414;370415;370416;370417;370418;370419;370420 226308;226309 226308 2 TILFVDEVHR Unmodified 1227.6612 0.66117189 619 P0AAZ4 rarA Replication-associated recombination protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 30.825 29.462 3 0.0018065 13802 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 61.353 58.375 50287000 8176200 7569600 6555300 0 0 0 5224000 5118000 0 0 0 0 0 0 2440700 0 0 0 3311200 5610700 6281700 0 0 0 19936 619 19311 370421;370422;370423;370424;370425;370426;370427;370428;370429 226310;226311 226311 2 TILLANK Unmodified 771.48544 0.48543935 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.39 18.943 2 0.072732 6722 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 68.398 57.284 142250000 7291300 8881200 0 0 0 0 12677000 13302000 10888000 0 0 554090 16151000 14904000 11016000 0 0 0 15437000 14969000 16178000 0 0 0 19937 1575 19312 370430;370431;370432;370433;370434;370435;370436;370437;370438;370439;370440;370441 226312;226313;226314;226315;226316;226317;226318 226317 0 TILNHTLGFPR Unmodified 1267.7037 0.70370541 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 3 3 1 1 1 2 2 2 2 2 2 29.108 27.71 2;3 3.3089E-05 13182 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 165.58 152.01 1600100000 92804000 88906000 75174000 0 0 534570 405590000 390520000 339410000 2878000 2521500 2408500 21037000 25836000 21632000 0 0 0 41175000 47211000 42460000 0 0 0 19938 1265 19313 370442;370443;370444;370445;370446;370447;370448;370449;370450;370451;370452;370453;370454;370455;370456;370457;370458;370459;370460;370461;370462;370463;370464;370465;370466;370467;370468;370469;370470;370471 226319;226320;226321;226322;226323;226324;226325;226326;226327;226328;226329;226330;226331;226332;226333;226334;226335;226336;226337;226338;226339;226340;226341;226342 226322 22 TILTLLQEGK Unmodified 1114.6598 0.6597749 1108 P15286 flk Flagellar regulator flk yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 42.398 40.476 2 0.011016 20153 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 64.654 60.493 31747000 0 0 0 0 0 0 4021700 3231900 2867600 0 1265700 1286900 1997700 2694900 0 0 0 0 5079100 5619400 3682300 0 0 0 19939 1108 19314 370472;370473;370474;370475;370476;370477;370478;370479;370480;370481 226343;226344;226345 226343 0 TILVPIDISDSELTQR Unmodified 1798.9676 0.96764382 1502 P37903 uspF Universal stress protein F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 50.802 49.462 2;3 9.2897E-14 24532 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.23 159.61 2484900000 244190000 229480000 223530000 29189000 29089000 24863000 313740000 351470000 337060000 8633500 9058100 10486000 145030000 123120000 121600000 0 0 0 90403000 93610000 89488000 3874900 3526300 3459700 19940 1502 19315 370482;370483;370484;370485;370486;370487;370488;370489;370490;370491;370492;370493;370494;370495;370496;370497;370498;370499;370500;370501;370502;370503;370504;370505;370506;370507;370508;370509;370510;370511;370512;370513;370514;370515;370516;370517 226346;226347;226348;226349;226350;226351;226352;226353;226354;226355;226356;226357;226358;226359;226360;226361;226362;226363;226364;226365;226366;226367;226368;226369 226347 24 TILWNGPVGVFEFPNFR Unmodified 1992.0258 0.025767826 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 3 2 2 1 1 2 2 3 2 2 3 55.41 53.944 2;3 1.3645E-31 26673 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 284.15 258.68 13058000000 1345300000 1213600000 1142600000 3128400 9335500 0 1685500000 1332900000 1401800000 3411900 0 2779800 785420000 184840000 739780000 0 0 0 1081000000 968850000 1157900000 0 0 0 19941 321 19316 370518;370519;370520;370521;370522;370523;370524;370525;370526;370527;370528;370529;370530;370531;370532;370533;370534;370535;370536;370537;370538;370539;370540;370541;370542;370543;370544;370545;370546;370547;370548;370549;370550 226370;226371;226372;226373;226374;226375;226376;226377;226378;226379;226380;226381;226382;226383;226384;226385;226386;226387;226388 226380 5 TINPTGIISIGPWQDLDEPHGR Unmodified 2415.2183 0.21827264 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 50.066 48.646 3 7.3877E-07 23762 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.94 98.93 560260000 91434000 81488000 85010000 0 0 0 56128000 59813000 54717000 0 0 0 26215000 0 22587000 0 0 0 27625000 29207000 26040000 0 0 0 19942 1557 19317 370551;370552;370553;370554;370555;370556;370557;370558;370559;370560;370561 226389;226390;226391;226392;226393 226392 5 TINSQLDYSLNSLK Unmodified 1594.8203 0.82025131 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.024 36.408 2 7.39E-20 14359 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 218.15 209.15 646420000 12377000 13340000 11748000 6695400 5570100 6015800 53422000 47711000 46499000 78696000 72983000 72462000 20184000 18039000 25410000 5523100 3560400 5325200 31591000 30652000 34917000 14711000 14367000 14619000 19943 1944 19318 370562;370563;370564;370565;370566;370567;370568;370569;370570;370571;370572;370573;370574;370575;370576;370577;370578;370579;370580;370581;370582;370583;370584;370585 226394;226395;226396;226397;226398;226399;226400;226401;226402;226403;226404;226405 226399 12 TIPGLIANMQR Unmodified 1212.6649 0.66487706 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.189 34.632 2 0.0020977 17130 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.853 80.363 357550000 27126000 30417000 26211000 0 0 0 34341000 45126000 42399000 0 0 0 28146000 28085000 30818000 0 0 0 17492000 24181000 23205000 0 0 0 19944 1252 19319 370586;370587;370588;370589;370590;370591;370592;370593;370594;370595;370596;370597 226406;226407;226408 226406 3 TIPLQDQDTR Unmodified 1185.599 0.59896556 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 17.514 17.949 2 9.0569E-05 6653 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.57 96.353 494590000 0 0 0 0 810290 1208000 11683000 10594000 8908500 1649800 2000400 1589300 71720000 87284000 81684000 716340 422030 0 0 107490000 104120000 708760 1239700 768810 19945 1903 19320 370598;370599;370600;370601;370602;370603;370604;370605;370606;370607;370608;370609;370610;370611;370612;370613;370614;370615;370616;370617;370618;370619;370620;370621;370622;370623 226409;226410;226411;226412;226413;226414;226415;226416;226417;226418;226419;226420;226421 226412 13 TIPQADAMK Oxidation (M) 989.48518 0.48518136 1733 P69441 adk Adenylate kinase yes yes 0 1 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.694 12.526 2 0.0033098 3198 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 84.568 76.227 338050000 28541000 21059000 30361000 0 0 0 37957000 37609000 35807000 0 0 0 19016000 16520000 16998000 0 0 0 31530000 30977000 31674000 0 0 0 19946 1733 19321 370624;370625;370626;370627;370628;370629;370630;370631;370632;370633;370634;370635 226422;226423;226424;226425;226426;226427;226428 226428 595 7 TIPQADAMK Unmodified 973.49027 0.49026674 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.275 16.101 2 0.00097193 5464 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 96.492 86.185 4542700000 425770000 410730000 403650000 0 666130 0 382230000 395280000 345350000 0 0 0 382280000 331710000 307110000 0 0 0 428170000 348280000 381490000 0 0 0 19947 1733 19321 370636;370637;370638;370639;370640;370641;370642;370643;370644;370645;370646;370647;370648 226429;226430;226431;226432;226433;226434;226435;226436;226437 226431 8 TIPSVLTALFCAR Unmodified 1447.7857 0.78572048 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.923 53.503 2 4.341E-15 26328 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 169.41 165.71 126760000 0 0 0 3613400 2760700 3960000 0 0 0 22708000 26741000 24212000 0 0 0 0 0 0 0 0 0 21769000 0 20997000 19948 531 19322 370649;370650;370651;370652;370653;370654;370655;370656;370657;370658;370659 226438;226439;226440;226441;226442;226443;226444;226445 226445 7 TIPVPMVVGHEYVGEVVGIGQEVK Unmodified 2535.3407 0.34069596 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 3 3 3 3 3 2 49.564 48.173 2;3;4 2.5918E-10 23326 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.62 112.03 2028800000 195240000 177680000 185350000 1371700 1623700 0 138230000 141670000 142130000 0 0 0 179450000 174750000 150710000 0 0 0 192500000 179150000 168930000 0 0 0 19949 172 19323 370660;370661;370662;370663;370664;370665;370666;370667;370668;370669;370670;370671;370672;370673;370674;370675;370676;370677;370678;370679;370680;370681;370682;370683;370684;370685;370686;370687;370688;370689;370690;370691;370692;370693;370694;370695;370696 226446;226447;226448;226449;226450;226451;226452;226453;226454;226455;226456;226457;226458;226459;226460;226461;226462;226463 226458 18 TIQLLEGELPSPINPPSGCVFR Unmodified 2423.2519 0.25188095 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 2 2 2 2 1 2 2 1 2 1 1 1 1 2 1 1 1 2 1 53.807 52.547 2;3 1.0356E-43 25958 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 306.69 302.06 272800000 50101000 48511000 47030000 15290000 4352700 11638000 12840000 6026600 10373000 0 4768300 5743500 3627300 3871600 12481000 3030100 3645200 4161800 20326000 0 4982900 0 0 0 19950 1935 19324 370697;370698;370699;370700;370701;370702;370703;370704;370705;370706;370707;370708;370709;370710;370711;370712;370713;370714;370715;370716;370717;370718;370719;370720;370721;370722;370723;370724 226464;226465;226466;226467;226468;226469;226470;226471;226472;226473;226474 226469 11 TIQMKAQVK Unmodified 1045.5954 0.59540051 975 P0AG00 wzzE Lipopolysaccharide biosynthesis protein WzzE yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.015 27.658 2 0.11911 8572 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 48.504 23.505 3333300000 0 0 0 178650000 172030000 164170000 0 0 0 705780000 677350000 697310000 0 0 0 92505000 71644000 84037000 0 0 0 151100000 181550000 157190000 19951 975 19325 370725;370726;370727;370728;370729;370730;370731;370732;370733;370734;370735;370736 226475;226476 226475 2 TIQQGFEAAK Unmodified 1091.5611 0.56112349 1568 P45464 lpoA Penicillin-binding protein activator LpoA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.473 17.175 2 0.00015969 5104 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 124.98 96.809 73386000 5709400 4757100 5049300 1538000 0 1135100 4420200 3550600 3719700 3309800 0 0 4339000 3462500 2633200 0 0 0 9099900 11128000 8057200 0 0 1476600 19952 1568 19326 370737;370738;370739;370740;370741;370742;370743;370744;370745;370746;370747;370748;370749;370750;370751;370752 226477;226478;226479;226480;226481;226482 226477 6 TIQVLQR Unmodified 856.51305 0.51305109 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.755 19.135 2 0.0014403 7415 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 129.96 75.436 1262100000 106580000 122430000 89796000 3369600 3816500 2704200 172560000 181980000 158350000 6174900 5327700 5483200 62280000 60458000 57617000 0 611720 1032900 78948000 76774000 63382000 1136400 1306400 0 19953 1662 19327 370753;370754;370755;370756;370757;370758;370759;370760;370761;370762;370763;370764;370765;370766;370767;370768;370769;370770;370771;370772;370773;370774 226483;226484;226485;226486;226487;226488;226489;226490;226491;226492;226493 226486 11 TIRIPVHMIETINK Unmodified 1663.9443 0.94434638 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 28.332 28.354 3;4 2.9711E-08 9087 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 141 137.69 241260000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 76118000 73105000 92043000 0 0 0 0 0 0 19954 36 19328 370775;370776;370777;370778;370779;370780 226494;226495;226496;226497;226498;226499;226500 226498 7 TIRIPVHMIETINKLNR Unmodified 2047.1724 0.17244884 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 2 By matching By MS/MS By MS/MS 1 1 1 30.464 30.486 5 0.0047611 9920 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 52.522 51.129 14148000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1918200 2969000 9261200 0 0 0 0 0 0 19955 36 19329 370781;370782;370783 226501;226502 226501 2 TIRLPIHIVK Unmodified 1188.7707 0.77066276 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 23.773 23.761 3 0.018154 7612 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 54.471 54.471 284970000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 150700000 70800000 63471000 0 0 0 0 0 0 19956 1089 19330 370784;370785;370786 226503;226504;226505;226506;226507 226503 5 TISANDLENAR Unmodified 1202.5891 0.58912916 1769 P75777 ybhG UPF0194 membrane protein YbhG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 21.075 20.854 2 0.00021474 6780 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 102.61 90.383 16319000 0 0 0 0 0 0 0 0 0 3750500 3185300 3493600 0 0 4545000 0 0 0 0 0 0 0 1344900 0 19957 1769 19331 370787;370788;370789;370790;370791 226508;226509;226510 226509 3 TISGQDALPNISDAER Unmodified 1685.822 0.82204222 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.127 30.787 2 1.4159E-30 14422 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 230.14 220.81 572860000 106120000 103790000 98962000 0 0 0 15682000 19953000 17880000 0 0 0 25761000 23343000 26263000 0 0 0 46030000 46102000 42973000 0 0 0 19958 34 19332 370792;370793;370794;370795;370796;370797;370798;370799;370800;370801;370802;370803 226511;226512;226513;226514;226515;226516;226517;226518;226519 226515 9 TISGSNTVPSTQVADAR Unmodified 1702.8486 0.84859132 275 P0A6S0 flgH Flagellar L-ring protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 19.614 20.176 2;3 5.0685E-14 7690 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 169.79 160.36 112330000 36601000 35063000 32953000 2981700 1912800 2822600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19959 275 19333 370804;370805;370806;370807;370808;370809;370810;370811;370812 226520;226521;226522;226523;226524;226525 226524 5 TISQLYDPEK Unmodified 1192.5976 0.59756858 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.187 24.065 2 0.00028173 10505 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.74 96.5 1180900000 80714000 68738000 70150000 0 0 0 122660000 118120000 118000000 2111800 1517100 0 78983000 69169000 54192000 0 0 0 141180000 125990000 129370000 0 0 0 19960 60 19334 370813;370814;370815;370816;370817;370818;370819;370820;370821;370822;370823;370824;370825;370826 226526;226527;226528;226529;226530;226531;226532;226533;226534;226535;226536 226533 11 TISSQKK Unmodified 790.45487 0.45486751 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 9.023 9.1566 2 0.0094185 1468 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 90.986 90.986 54553000 0 0 0 0 0 0 0 0 0 10221000 7727800 10127000 0 0 0 4448200 4471300 2285600 0 0 0 5848500 4956300 4466700 19961 1050 19335 370827;370828;370829;370830;370831;370832;370833;370834;370835 226537;226538;226539;226540;226541;226542;226543 226541 7 TISYNLPVYNAFGMIEQEIPK Unmodified 2426.2192 0.21918384 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 55.354 53.894 2 4.1503E-05 26861 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.63 107.04 99608000 11014000 16040000 9059500 2486500 0 1590400 22103000 19323000 17991000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19962 1440 19336 370836;370837;370838;370839;370840;370841;370842;370843 226544;226545 226544 2 TITFEEIAGK Unmodified 1107.5812 0.58119023 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.413 32.12 2 0.0012791 11353 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 85.676 78.953 681260000 56137000 49235000 44375000 0 0 681690 73723000 62933000 63586000 0 1745800 2609100 43293000 40206000 36068000 13017000 8384000 9554300 57058000 54520000 64133000 0 0 0 19963 37 19337 370844;370845;370846;370847;370848;370849;370850;370851;370852;370853;370854;370855;370856;370857;370858;370859;370860;370861 226546;226547;226548;226549;226550;226551;226552;226553;226554;226555;226556;226557;226558;226559;226560 226546 15 TITIAELR Unmodified 915.53893 0.53893149 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.936 28.487 2 0.00081525 10709 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 121.99 106.55 83499000 0 0 0 3042200 2344200 2558600 7330400 6563800 2632300 14917000 11918000 12972000 0 0 0 1728400 1147800 1717800 0 0 0 4275400 4178000 6173000 19964 27 19338 370862;370863;370864;370865;370866;370867;370868;370869;370870;370871;370872;370873;370874;370875;370876;370877;370878 226561;226562;226563;226564;226565 226563 5 TITIAELRDEKGELLVPER Unmodified 2181.2005 0.20049731 27 P00393 ndh NADH dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 1 2 36.543 34.465 3;4 4.3445E-10 13885 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 124.29 122.86 97275000 0 0 0 4095900 5288100 5149100 0 0 0 19900000 22899000 20747000 0 0 0 0 0 0 0 0 0 7226500 5003900 6964600 19965 27 19339 370879;370880;370881;370882;370883;370884;370885;370886;370887;370888;370889;370890;370891;370892;370893;370894;370895 226566;226567;226568;226569;226570;226571;226572;226573;226574;226575;226576 226566 11 TITPIAQFQIPCLIK Unmodified 1741.9801 0.98006319 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.805 52.365 2 1.2227E-08 25538 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.91 139.88 243150000 46535000 41356000 39782000 0 0 0 6666400 5711100 7375400 0 0 0 9691200 10119000 10066000 0 0 0 23079000 22524000 20246000 0 0 0 19966 34 19340 370896;370897;370898;370899;370900;370901;370902;370903;370904;370905;370906;370907 226577;226578;226579;226580 226580 3 TITPLIEQQK Unmodified 1169.6656 0.66558856 41 P00811 ampC Beta-lactamase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.66 23.663 2 0.00074153 10262 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.819 84.619 121270000 15625000 11714000 11691000 0 0 0 10091000 8152600 6192300 0 0 0 7800200 6527100 6464200 0 0 0 12120000 12703000 12190000 0 0 0 19967 41 19341 370908;370909;370910;370911;370912;370913;370914;370915;370916;370917;370918;370919 226581;226582;226583;226584;226585;226586 226585 1 TITSTEALLPVLDQVR Unmodified 1754.9778 0.97781458 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 51.209 49.946 2;3 3.1694E-19 24743 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 201 194.56 683370000 66860000 54585000 57900000 0 0 0 61134000 57240000 51308000 0 0 0 54553000 48735000 42840000 0 0 0 68968000 57098000 62152000 0 0 0 19968 1845 19342 370920;370921;370922;370923;370924;370925;370926;370927;370928;370929;370930;370931;370932;370933;370934;370935;370936;370937;370938;370939;370940;370941;370942 226587;226588;226589;226590;226591;226592;226593;226594;226595;226596;226597;226598;226599 226587 13 TITVAFQHAADK Unmodified 1300.6776 0.67755023 1746 P69801 manY Mannose permease IIC component yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 2 2 1 1 2 1 1 2 1 19.534 19.837 2;3 0.0037676 7661 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 65.5 56.638 203140000 0 0 0 0 0 0 42631000 42790000 43336000 2550400 7112700 6706500 6370600 5923100 6100600 0 0 0 7575100 7283100 24257000 0 502020 0 19969 1746 19343 370943;370944;370945;370946;370947;370948;370949;370950;370951;370952;370953;370954;370955;370956;370957;370958;370959 226600;226601;226602 226601 1 TITYTDSSGAASSPTAVK Unmodified 1755.8527 0.85267365 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 20.173 20.615 2 3.4319E-22 7953 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 226.04 217.3 404580000 130120000 133830000 122320000 6083400 6094100 6125500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19970 96 19344 370960;370961;370962;370963;370964;370965 226603;226604;226605;226606;226607;226608 226608 6 TIVALNPAPAR Unmodified 1121.6557 0.65569258 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.478 24.389 2 8.0239E-05 10698 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.63 129.97 600660000 34381000 33959000 32734000 0 0 0 54589000 50869000 50634000 0 0 0 56081000 61133000 51308000 0 0 0 61786000 56041000 57149000 0 0 0 19971 528 19345 370966;370967;370968;370969;370970;370971;370972;370973;370974;370975;370976;370977 226609;226610;226611;226612;226613;226614;226615;226616;226617;226618;226619;226620 226617 11 TIVCPLIQNDGAYLLCK Unmodified 1977.0064 0.0063542914 1597 P52006 nudI Nucleoside triphosphatase NudI yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 49.208 47.835 2 1.8061E-08 22528 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.82 111.87 58698000 0 0 0 0 0 0 6403300 7219800 5636000 0 0 0 6746200 4886500 6130800 0 0 0 6922500 8360500 6392000 0 0 0 19972 1597 19346 370978;370979;370980;370981;370982;370983;370984;370985;370986 226621 226621 1 TIVDQELLPYVQVK Unmodified 1643.9134 0.91342341 813 P0ADV7 mlaC Probable phospholipid-binding protein MlaC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.296 46.999 2 0.080113 21931 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 42.001 42.001 176280000 12846000 13725000 10996000 0 0 0 17982000 16323000 0 0 0 0 19130000 17699000 17299000 0 0 0 16366000 16849000 17070000 0 0 0 19973 813 19347 370987;370988;370989;370990;370991;370992;370993;370994;370995;370996;370997 226622 226622 0 TIVDVLDATTTLYNAK Unmodified 1736.9196 0.919631 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 2 1 2 1 1 2 2 2 1 1 1 2 2 1 1 2 1 2 2 2 53.119 51.908 2;3 7.6782E-06 21071 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 88.561 77.927 240650000 0 2897600 7879600 2476700 2863100 2127000 15383000 3062700 7873900 16246000 13793000 16557000 12098000 12425000 11295000 11436000 6249100 5370600 15762000 34333000 11745000 8583900 10297000 9893900 19974 73 19348 370998;370999;371000;371001;371002;371003;371004;371005;371006;371007;371008;371009;371010;371011;371012;371013;371014;371015;371016;371017;371018;371019;371020;371021;371022;371023;371024;371025;371026;371027;371028;371029;371030;371031 226623;226624;226625;226626 226623 4 TIVFISHDLDEAMR Unmodified 1645.8134 0.81339179 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 2 1 2 1 1 1 2 2 2 1 1 2 38.813 37.112 2;3 1.6627E-06 18325 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 149.31 143.47 414370000 29358000 19135000 25277000 4359200 4631800 7002700 25803000 25960000 18126000 19456000 16622000 10846000 18700000 10523000 19430000 1679000 1761900 1730200 43653000 47277000 41877000 6043700 6068400 9050600 19975 1094 19349 371032;371033;371034;371035;371036;371037;371038;371039;371040;371041;371042;371043;371044;371045;371046;371047;371048;371049;371050;371051;371052;371053;371054;371055;371056;371057;371058;371059;371060;371061;371062;371063;371064;371065;371066;371067;371068;371069;371070 226627;226628;226629;226630;226631;226632;226633;226634;226635;226636;226637;226638;226639;226640;226641;226642;226643;226644;226645;226646;226647;226648;226649;226650;226651;226652 226635 26 TIVSDGKPQTDNDTGMISYK Unmodified 2169.026 0.025963339 1702 P65292 ygdI Uncharacterized lipoprotein YgdI yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.768 22.815 3 5.4949E-08 9795 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.77 107.63 429150000 83682000 79329000 54202000 10414000 9524300 10548000 18868000 18781000 26100000 21810000 19976000 20252000 0 0 0 0 0 0 17354000 16127000 16457000 3626600 2094600 0 19976 1702 19350 371071;371072;371073;371074;371075;371076;371077;371078;371079;371080;371081;371082;371083;371084;371085;371086;371087 226653;226654;226655;226656;226657;226658;226659;226660;226661;226662;226663 226662 10 TIVVYGTR Unmodified 907.51272 0.51271674 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.62 19.926 2 0.0010836 7262 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 111.82 81.147 298070000 53234000 44237000 42080000 2585700 2545100 2917800 14659000 20239000 13093000 3759100 3323800 3154900 12339000 8930200 9762500 0 0 0 21116000 18883000 17131000 2569500 0 1508400 19977 734 19351 371088;371089;371090;371091;371092;371093;371094;371095;371096;371097;371098;371099;371100;371101;371102;371103;371104;371105;371106;371107 226664;226665;226666;226667;226668;226669;226670;226671;226672;226673;226674 226674 11 TIYDSVYNDLINYLASPDQTEGFDDLIK Unmodified 3221.5292 0.52922083 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 55.941 55.005 3 3.729E-31 21346 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 189.39 183.67 305930000 0 0 0 0 0 0 0 0 0 47253000 367750 41761000 0 0 0 48921000 40949000 36503000 0 0 0 29385000 32653000 28140000 19978 1616 19352 371108;371109;371110;371111;371112;371113;371114;371115;371116 226675;226676;226677;226678;226679 226675 5 TIYQYLQK Unmodified 1055.5651 0.56514624 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.432 26.069 2 0.0037325 9654 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 89.673 89.029 766960000 52595000 56299000 61155000 1814400 1619900 2503100 68739000 60273000 60696000 6014500 5759000 5059600 53885000 49823000 45506000 0 0 0 70570000 72407000 81261000 4147800 3902300 2930700 19979 1144 19353 371117;371118;371119;371120;371121;371122;371123;371124;371125;371126;371127;371128;371129;371130;371131;371132;371133;371134;371135;371136;371137 226680;226681;226682;226683;226684;226685;226686;226687;226688;226689;226690;226691;226692;226693;226694;226695;226696 226682 13 TKADQEK Unmodified 818.4134 0.41339662 264 P0A6M8 fusA Elongation factor G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 2.9563 3.852 2 0.00076483 402 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 154.01 127.9 538270000 66513000 55484000 60317000 0 0 0 3148500 2811400 2816100 0 0 0 26290000 27224000 22122000 0 0 0 85306000 87516000 98725000 0 0 0 19980 264 19354 371138;371139;371140;371141;371142;371143;371144;371145;371146;371147;371148;371149;371150 226697;226698;226699;226700;226701;226702;226703;226704;226705;226706;226707;226708;226709;226710 226707 14 TKAEADISEYITK Unmodified 1467.7457 0.74568938 1928 P77695 gnsB Protein GnsB yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 2 2 2 2 2 2 24.585 23.577 2;3 2.9307E-09 10439 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 176.99 171.02 757710000 115750000 113170000 45640000 0 0 643920 77208000 78899000 69748000 0 0 0 30401000 31160000 26401000 0 0 0 58243000 60289000 50151000 0 0 0 19981 1928 19355 371151;371152;371153;371154;371155;371156;371157;371158;371159;371160;371161;371162;371163;371164;371165;371166;371167;371168;371169;371170;371171;371172;371173;371174 226711;226712;226713;226714;226715;226716;226717;226718;226719;226720;226721;226722 226715 12 TKDGQQLNLDNIGTTPLAEK Unmodified 2155.1121 0.11207623 1151 P18390 yjjA Uncharacterized protein YjjA yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.708 31.219 3 0.0011549 14777 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 62.303 52.829 103900000 0 9713600 0 3519500 3793000 3969900 17668000 0 14916000 0 0 0 0 6091700 10886000 0 0 0 15277000 11269000 0 0 3160000 3637400 19982 1151 19356 371175;371176;371177;371178;371179;371180;371181;371182;371183;371184;371185;371186 226723;226724;226725;226726;226727;226728 226723 6 TKDQFVQPVVK Unmodified 1287.7187 0.71868677 779 P0ADB1 osmE Osmotically-inducible lipoprotein E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 2 2 1 2 2 2 2 2 1 1 1 1 2 2 2 1 1 16.85 17.374 2;3 1.4617E-11 6405 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 222.28 203.97 565470000 64439000 77488000 73678000 4835100 9975900 14853000 19974000 62806000 62309000 34985000 27736000 19549000 7397800 5867300 0 0 1209200 1156900 24062000 26186000 24094000 1343900 1530400 0 19983 779 19357 371187;371188;371189;371190;371191;371192;371193;371194;371195;371196;371197;371198;371199;371200;371201;371202;371203;371204;371205;371206;371207;371208;371209;371210;371211;371212;371213;371214;371215;371216;371217;371218;371219;371220 226729;226730;226731;226732;226733;226734;226735;226736;226737;226738;226739;226740;226741;226742;226743;226744;226745;226746;226747;226748 226735 20 TKEANEEIDGDERPETSHLTR Unmodified 2426.131 0.13097377 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 12.562 13.395 3;4 1.1156E-22 3925 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 179.03 179.03 857600000 50038000 41172000 46470000 0 0 0 110370000 82333000 81736000 0 0 0 103390000 73835000 80068000 0 0 0 66433000 69937000 51815000 0 0 0 19984 1868 19358 371221;371222;371223;371224;371225;371226;371227;371228;371229;371230;371231;371232;371233;371234;371235;371236;371237;371238;371239;371240;371241;371242;371243;371244 226749;226750;226751;226752;226753;226754;226755;226756;226757;226758 226752 10 TKENLGSGFISLFR Unmodified 1567.8358 0.83584179 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 42.966 41.292 2;3 3.7501E-11 20666 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.99 143.9 596160000 34443000 31181000 32308000 4593500 4310800 3759600 55191000 54963000 48939000 26911000 26319000 21750000 26571000 24540000 27775000 7132200 4842500 7578900 36518000 38119000 38341000 13469000 13292000 13317000 19985 1052 19359 371245;371246;371247;371248;371249;371250;371251;371252;371253;371254;371255;371256;371257;371258;371259;371260;371261;371262;371263;371264;371265;371266;371267;371268;371269;371270;371271;371272;371273;371274;371275;371276;371277;371278;371279;371280;371281;371282;371283;371284;371285;371286;371287;371288;371289 226759;226760;226761;226762;226763;226764;226765;226766;226767;226768;226769;226770;226771;226772;226773;226774;226775;226776;226777;226778;226779;226780;226781;226782;226783;226784;226785;226786 226767 27 TKESYKVPYGAVLAK Unmodified 1652.9138 0.91375776 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 3 3 7 7 5 3 3 3 21.18 20.993 2;3;4 4.7455E-15 6678 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 199.96 185.73 16280000000 0 0 0 3020400 8175500 8514800 0 0 0 1107600000 644290000 887930000 0 0 0 3574400000 2920000000 2928400000 0 0 0 1547200000 1321000000 1329900000 19986 458 19360 371290;371291;371292;371293;371294;371295;371296;371297;371298;371299;371300;371301;371302;371303;371304;371305;371306;371307;371308;371309;371310;371311;371312;371313;371314;371315;371316;371317;371318;371319;371320;371321;371322;371323;371324;371325;371326;371327;371328;371329;371330;371331 226787;226788;226789;226790;226791;226792;226793;226794;226795;226796;226797;226798;226799;226800;226801;226802;226803;226804;226805;226806;226807;226808;226809;226810;226811;226812;226813;226814;226815;226816;226817;226818;226819;226820;226821;226822;226823;226824;226825;226826 226819 40 TKHAVTEASPMVK Unmodified 1397.7337 0.7336849 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 11.522 11.939 2;3 2.8179E-05 2283 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 72.891 65.526 432530000 0 0 0 20931000 24743000 24121000 0 0 0 52496000 49496000 52254000 0 0 0 43372000 35449000 35137000 0 0 0 30805000 28209000 35523000 19987 66 19361 371332;371333;371334;371335;371336;371337;371338;371339;371340;371341;371342;371343;371344;371345;371346;371347;371348;371349;371350;371351;371352;371353 226827;226828;226829;226830;226831;226832;226833;226834;226835;226836 226832 10 TKIELDQDYIDER Unmodified 1636.7944 0.79443049 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.645 26.48 3 0.03892 11625 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 48.823 43.918 107320000 8906300 7232700 7714900 0 0 0 11405000 10613000 10280000 0 0 0 6307900 0 8665000 0 0 0 11232000 14180000 10788000 0 0 0 19988 1203 19362 371354;371355;371356;371357;371358;371359;371360;371361;371362;371363;371364;371365 226837;226838 226837 2 TKLNELLEFPTPFTYK Unmodified 1940.0295 0.029515799 437 P0A8J4 ybeD UPF0250 protein YbeD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 49.948 49.178 3 0.00014329 17866 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 70.117 66.149 30693000 0 0 0 7573700 7443800 7062500 0 0 0 1232800 0 0 0 0 0 3527800 1851600 2000900 0 0 0 0 0 0 19989 437 19363 371366;371367;371368;371369;371370;371371;371372 226839;226840;226841;226842 226841 4 TKPASAIAEAIDAGQR Unmodified 1597.8424 0.84238373 1709 P67080 yggS UPF0001 protein YggS yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.268 24.217 2;3 7.35E-10 11114 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 168.61 162.37 592900000 26172000 26141000 21657000 0 0 0 56805000 57887000 60743000 0 0 0 43823000 42666000 46050000 0 0 0 69795000 71415000 69749000 0 0 0 19990 1709 19364 371373;371374;371375;371376;371377;371378;371379;371380;371381;371382;371383;371384;371385;371386;371387;371388;371389;371390;371391;371392;371393;371394;371395;371396 226843;226844;226845;226846;226847;226848;226849;226850;226851;226852;226853;226854;226855;226856;226857;226858;226859;226860;226861;226862 226845 20 TKPEKLELK Unmodified 1084.6492 0.64921022 360 P0A7N9 rpmG 50S ribosomal protein L33 yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 3 2 2 2 2 2 1 1 1 2 2 2 11.527 11.984 2;3 0.0018959 2560 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 82.749 68.543 615590000 3622000 0 4291100 22466000 24555000 25857000 0 0 0 73730000 61352000 74805000 0 0 0 31157000 25255000 33986000 6576400 0 0 83547000 69982000 74412000 19991 360 19365 371397;371398;371399;371400;371401;371402;371403;371404;371405;371406;371407;371408;371409;371410;371411;371412;371413;371414;371415;371416;371417;371418;371419;371420;371421;371422 226863;226864;226865;226866;226867;226868;226869;226870;226871;226872;226873;226874;226875;226876;226877;226878;226879;226880;226881;226882;226883;226884 226864 22 TKPHVNVGTIGHVDHGK Unmodified 1794.9489 0.94891449 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 4 4 4 5 5 4 4 3 4 4 4 4 3 3 3 5 4 4 3 3 3 11.555 12.202 2;3;4;5 6.3056E-19 3181 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 237.18 237.18 141400000000 12173000000 7396800000 7802800000 343210000 382360000 274260000 14242000000 12817000000 13718000000 112950000 82596000 100120000 10916000000 8062200000 8598200000 88371000 161400000 128350000 14945000000 14719000000 14074000000 99496000 97709000 63477000 19992 1048 19366 371423;371424;371425;371426;371427;371428;371429;371430;371431;371432;371433;371434;371435;371436;371437;371438;371439;371440;371441;371442;371443;371444;371445;371446;371447;371448;371449;371450;371451;371452;371453;371454;371455;371456;371457;371458;371459;371460;371461;371462;371463;371464;371465;371466;371467;371468;371469;371470;371471;371472;371473;371474;371475;371476;371477;371478;371479;371480;371481;371482;371483;371484;371485;371486;371487;371488;371489;371490;371491;371492;371493;371494;371495;371496;371497;371498;371499;371500;371501;371502;371503;371504;371505;371506;371507;371508;371509;371510;371511;371512;371513;371514 226885;226886;226887;226888;226889;226890;226891;226892;226893;226894;226895;226896;226897;226898;226899;226900;226901;226902;226903;226904;226905;226906;226907;226908;226909;226910;226911;226912;226913;226914;226915;226916;226917;226918;226919;226920;226921;226922;226923;226924;226925;226926;226927;226928;226929;226930;226931;226932;226933;226934;226935;226936;226937;226938;226939;226940;226941;226942;226943;226944;226945;226946;226947;226948;226949;226950;226951;226952;226953;226954;226955;226956;226957;226958;226959;226960;226961;226962;226963;226964;226965;226966;226967;226968;226969;226970;226971;226972;226973;226974;226975;226976;226977;226978;226979;226980;226981;226982 226934 96 TKPIVFSGAQPSGELTIGNYMGALR Unmodified 2606.3527 0.35265763 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 1 2 2 46.395 44.897 2;3 1.4104E-49 21887 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 227 212.92 1705400000 16125000 193320000 166180000 0 0 0 209570000 188120000 160510000 0 0 0 180130000 7456500 4133200 0 0 0 208740000 205630000 165490000 0 0 0 19993 57 19367 371515;371516;371517;371518;371519;371520;371521;371522;371523;371524;371525;371526;371527;371528;371529;371530;371531;371532;371533;371534;371535 226983;226984;226985;226986;226987;226988;226989;226990;226991;226992;226993;226994;226995;226996;226997 226992 15 TKPTQHSVK Unmodified 1024.5665 0.56654322 337 P0A7E5 pyrG CTP synthase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4.692 5.5888 2 0.0010994 912 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 105.14 93.914 1453700000 91990000 86759000 74990000 809110 1071600 1132300 85191000 123910000 123040000 0 0 0 116840000 124540000 113950000 0 0 0 172760000 176830000 159930000 0 0 0 19994 337 19368 371536;371537;371538;371539;371540;371541;371542;371543;371544;371545;371546;371547;371548;371549;371550 226998;226999;227000;227001;227002;227003;227004;227005;227006;227007;227008 227001 11 TKQGMWLNADQQSR Unmodified 1661.7944 0.79438768 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 18.883 18.704 2;3 2.9124E-05 5685 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 100.56 99.308 46447000 0 0 0 0 0 0 0 0 0 13800000 15302000 8832800 0 0 0 0 0 4701100 0 0 0 2667200 0 1144600 19995 1088 19369 371551;371552;371553;371554;371555;371556;371557;371558;371559 227009;227010;227011;227012 227011 4 TKQPEDWLDDVPGDDIEDEDDEIIWVSK Unmodified 3300.4834 0.48339285 469 P0A8X0 yjgA UPF0307 protein YjgA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 53.334 51.898 3 1.815E-07 25694 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.212 95.212 84003000 22517000 17578000 15994000 0 0 0 2488800 0 3142200 0 0 0 0 6455800 4237500 0 0 0 4447600 7142900 0 0 0 0 19996 469 19370 371560;371561;371562;371563;371564;371565;371566;371567;371568 227013;227014;227015 227013 3 TKYETELNLR Unmodified 1265.6616 0.66156582 6 CON__P02533;CON__Q6IFX2 yes no 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 18.864 18.95 2 0.00041241 5807 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 122.52 117.9 18029000 0 0 0 702630 409250 0 0 0 0 4338100 4210400 3486200 0 0 0 0 0 0 0 0 0 1971100 1394700 1516800 + 19997 6 19371 371569;371570;371571;371572;371573;371574;371575;371576 227016;227017;227018 227018 3 TLAAQFNR Unmodified 919.48756 0.48756462 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 17.756 18.443 2 0.00075894 6513 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 124.37 102.24 189070000 8758300 0 6030900 0 0 0 0 33640000 0 0 0 0 23506000 21472000 19770000 0 0 0 26108000 28142000 21648000 0 0 0 19998 1299 19372 371577;371578;371579;371580;371581;371582;371583;371584;371585 227019;227020;227021;227022;227023;227024 227022 5 TLAAQLYGEMK Unmodified 1223.622 0.62200919 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 34.226 32.615 2 0.00035985 15329 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.898 69.802 120460000 0 39446000 0 0 0 0 23515000 24445000 20109000 0 0 0 0 0 12944000 0 0 0 0 0 0 0 0 0 19999 426 19373 371586;371587;371588;371589;371590;371591 227025;227026 227025 1 TLAASGIK Unmodified 759.44905 0.44905385 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 13.014 13.933 2 0.0062957 4216 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.212 54.792 6599000000 544170000 541430000 3172400 4430200 2611300 4576800 789450000 676850000 605630000 0 0 0 586190000 601420000 496930000 0 0 0 625500000 561510000 555130000 0 0 0 20000 869 19374 371592;371593;371594;371595;371596;371597;371598;371599;371600;371601;371602;371603;371604;371605;371606;371607 227027;227028;227029;227030;227031;227032;227033;227034;227035;227036;227037 227027 11 TLADCEPMLASFYHATLLK Unmodified 2180.0646 0.064597452 511 P0A9D4 cysE Serine acetyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.879 49.599 3 7.6364E-06 24107 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 88.019 87.976 393610000 62771000 75401000 65339000 541960 1129600 485710 27570000 20425000 18625000 0 0 0 14113000 16731000 16216000 0 0 0 25603000 24633000 21581000 0 0 2439500 20001 511 19375 371608;371609;371610;371611;371612;371613;371614;371615;371616;371617;371618;371619;371620;371621;371622;371623 227038;227039;227040;227041;227042;227043;227044;227045;227046;227047 227041 10 TLADNFHIPATNMNPVIFAGDKPGQNTK Unmodified 3010.4971 0.49709003 830 P0AE22 aphA Class B acid phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 43.38 41.882 3;4 4.8886E-16 20498 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.44 142.74 1769700000 191700000 165390000 152390000 0 0 0 127930000 158430000 119440000 0 0 0 164690000 159840000 137170000 0 0 0 138330000 127310000 127110000 0 0 0 20002 830 19376 371624;371625;371626;371627;371628;371629;371630;371631;371632;371633;371634;371635;371636;371637;371638;371639;371640;371641;371642;371643;371644;371645;371646 227048;227049;227050;227051;227052;227053;227054;227055;227056;227057;227058;227059;227060;227061;227062;227063;227064;227065;227066;227067 227058 19 TLAEGQNVEFEIQDGQK Unmodified 1904.9116 0.91158551 566 P0A9Y6 cspC Cold shock-like protein CspC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 11 10 13 3 3 2 10 6 9 1 1 1 8 11 9 2 2 2 8 11 8 35.204 33.758 2;3 6.5364E-40 14484 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 344.98 328.69 25948000000 1661200000 1648600000 1529400000 7363400 6900000 5454500 2218300000 2002700000 1992700000 2156700 1847900 1860200 2364700000 2272400000 2097600000 4920200 3251600 3334000 2641700000 2797200000 2684500000 0 0 0 20003 566 19377 371647;371648;371649;371650;371651;371652;371653;371654;371655;371656;371657;371658;371659;371660;371661;371662;371663;371664;371665;371666;371667;371668;371669;371670;371671;371672;371673;371674;371675;371676;371677;371678;371679;371680;371681;371682;371683;371684;371685;371686;371687;371688;371689;371690;371691;371692;371693;371694;371695;371696;371697;371698;371699;371700;371701;371702;371703;371704;371705;371706;371707;371708;371709;371710;371711;371712;371713;371714;371715;371716;371717;371718;371719;371720;371721;371722;371723;371724;371725;371726;371727;371728;371729;371730;371731;371732;371733;371734;371735;371736;371737;371738;371739;371740;371741;371742;371743;371744;371745;371746;371747;371748;371749;371750;371751;371752;371753;371754;371755;371756;371757;371758;371759;371760;371761;371762;371763;371764;371765;371766;371767;371768;371769;371770;371771;371772;371773;371774;371775;371776;371777 227068;227069;227070;227071;227072;227073;227074;227075;227076;227077;227078;227079;227080;227081;227082;227083;227084;227085;227086;227087;227088;227089;227090;227091;227092;227093;227094;227095;227096;227097;227098;227099;227100;227101;227102;227103;227104;227105;227106;227107;227108;227109;227110;227111;227112;227113;227114;227115;227116;227117;227118;227119;227120;227121;227122;227123;227124;227125;227126;227127;227128;227129;227130;227131;227132;227133;227134;227135;227136;227137;227138;227139;227140;227141;227142;227143;227144;227145;227146;227147;227148;227149;227150;227151;227152;227153;227154;227155;227156;227157;227158;227159;227160;227161;227162;227163;227164;227165;227166;227167;227168;227169;227170;227171;227172;227173;227174;227175;227176;227177;227178;227179;227180;227181;227182;227183;227184;227185;227186;227187;227188;227189;227190;227191;227192;227193;227194;227195;227196;227197;227198;227199;227200;227201;227202;227203;227204;227205;227206;227207;227208;227209;227210;227211;227212;227213;227214;227215;227216;227217;227218;227219;227220;227221;227222;227223;227224;227225;227226;227227;227228;227229;227230;227231;227232;227233;227234;227235;227236;227237;227238;227239;227240;227241;227242;227243;227244;227245;227246;227247;227248;227249;227250;227251;227252;227253;227254;227255;227256;227257;227258;227259;227260;227261;227262;227263;227264;227265;227266;227267;227268;227269;227270;227271;227272;227273;227274;227275;227276;227277;227278;227279;227280;227281;227282;227283;227284;227285 227120 209 TLAEGQR Unmodified 773.40317 0.40316629 495 P0A972 cspE Cold shock-like protein CspE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 10.229 10.782 2 0.0012847 2548 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 132.72 84.975 30624000000 935900000 891070000 745520000 2289800 2170700 33867 2158600000 2227400000 2208100000 5301100 3503900 5025600 3423600000 3004900000 3082000000 9706300 10580000 14178000 4371000000 4163100000 3350900000 0 8279200 461270 20004 495 19378 371778;371779;371780;371781;371782;371783;371784;371785;371786;371787;371788;371789;371790;371791;371792;371793;371794;371795;371796;371797;371798;371799;371800;371801;371802;371803 227286;227287;227288;227289;227290;227291;227292;227293;227294;227295;227296;227297;227298;227299;227300 227296 15 TLAGPLNFTLPAGQR Unmodified 1554.8518 0.85182621 1328 P29018 cydD ATP-binding/permease protein CydD yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 45.93 44.333 2 3.6821E-06 21627 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 104.32 95.002 46688000 5807600 0 0 1654400 1443900 1511800 3398100 0 3497100 0 1761800 2305600 4470800 3530400 0 0 0 0 6518100 6083400 4705200 0 0 0 20005 1328 19379 371804;371805;371806;371807;371808;371809;371810;371811;371812;371813;371814;371815;371816 227301;227302;227303;227304;227305 227302 0 TLALMLYQLAWQK Unmodified 1577.864 0.8639708 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 54.83 53.478 3 1.5477E-05 19661 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 102.4 102.37 19605000 0 0 0 5746400 6449800 5311800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2097400 0 0 20006 1904 19380 371817;371818;371819;371820 227306 227306 1 TLAQAATHYK Unmodified 1102.5771 0.57710791 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 12.107 13.065 2;3 0.00029148 3789 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 112.84 92.845 157060000 24855000 26327000 21858000 30918000 24723000 28384000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20007 151 19381 371821;371822;371823;371824;371825;371826;371827;371828;371829 227307;227308;227309;227310 227310 4 TLAQAATHYKK Unmodified 1230.6721 0.67207093 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 11.004 11.897 2;3 0.0003138 2244 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 98.044 72.423 181990000 15563000 16253000 18194000 45519000 38727000 47732000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20008 151 19382 371830;371831;371832;371833;371834;371835;371836;371837;371838;371839;371840;371841 227311;227312;227313;227314;227315;227316 227312 6 TLAQDILGK Unmodified 957.5495 0.54949617 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS 1 1 31.908 30.787 2 0.028054 14189 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 60.59 1.7748 1398300000 0 0 0 0 0 0 0 0 0 0 0 0 760370000 0 637880000 0 0 0 0 0 0 0 0 0 20009 448 19383 371842;371843 227317;227318 227317 2 TLAQEVLGTTK Unmodified 1159.6449 0.64485312 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.025 28.641 2 1.61E-07 13406 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 168.8 135 6248000000 527570000 558770000 440790000 1788200 0 1420300 963600000 942840000 873370000 0 0 0 303040000 338300000 289280000 0 0 0 337480000 361790000 307900000 0 0 0 20010 449 19384 371844;371845;371846;371847;371848;371849;371850;371851;371852;371853;371854;371855;371856;371857 227319;227320;227321;227322;227323;227324;227325;227326;227327;227328;227329;227330 227322 12 TLAQQLIDFGEIK Unmodified 1474.8031 0.80314468 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.887 49.552 2 7.4362E-09 24489 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 165.63 153.47 458520000 39104000 44265000 46738000 509360 599680 953790 40375000 39861000 36478000 2606300 0 1550700 31962000 32108000 27536000 0 0 0 39829000 38564000 35485000 0 0 0 20011 1507 19385 371858;371859;371860;371861;371862;371863;371864;371865;371866;371867;371868;371869;371870;371871;371872;371873;371874 227331;227332;227333;227334;227335 227332 5 TLAQQLIDFGEIKR Unmodified 1630.9043 0.90425571 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.311 41.405 2;3 3.9889E-06 16612 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 108.66 87.695 180460000 0 0 0 4858700 4787300 5019600 0 0 36226000 16439000 18335000 17876000 0 17803000 17562000 0 0 0 0 0 21358000 7008900 8271900 4911600 20012 1507 19386 371875;371876;371877;371878;371879;371880;371881;371882;371883;371884;371885;371886;371887;371888 227336;227337;227338;227339;227340;227341;227342;227343 227337 8 TLASVQTLDESR Unmodified 1318.6729 0.67285879 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.204 23.307 2 9.286E-12 10125 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 188.87 173.72 1011000000 99948000 85151000 91976000 0 0 0 120560000 119630000 101140000 0 0 0 68906000 63332000 77851000 0 0 0 63779000 60973000 57770000 0 0 0 20013 1284 19387 371889;371890;371891;371892;371893;371894;371895;371896;371897;371898;371899;371900 227344;227345;227346;227347;227348;227349;227350 227347 7 TLATELADELLAIYNANYQSEYR Unmodified 2660.297 0.29697647 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 55.958 54.538 3 2.1111E-29 26855 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.97 144.4 154760000 24052000 127280 22097000 0 0 0 97831 0 0 0 0 0 17652000 21629000 21902000 0 0 0 0 25987000 21218000 0 0 0 20014 94 19388 371901;371902;371903;371904;371905;371906;371907;371908;371909 227351 227351 1 TLAVTLAK Unmodified 815.51165 0.5116541 1886 P77212 rclA Probable pyridine nucleotide-disulfide oxidoreductase RclA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1 1 1 1 1 1 20.146 20.462 2 0.0075161 8913 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 83.206 65.297 450750000 51532000 17966000 42700000 0 0 0 40972000 46715000 37808000 0 0 0 0 40111000 36370000 0 0 0 46504000 42178000 47896000 0 0 0 20015 1886 19389 371910;371911;371912;371913;371914;371915;371916;371917;371918;371919;371920;371921;371922;371923 227352;227353;227354;227355;227356;227357;227358;227359;227360 227358 9 TLAVVGESGCGK Unmodified 1176.5809 0.58087266 1463 P37313 dppF Dipeptide transport ATP-binding protein DppF yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 17.296 18.01 2 3.2429E-06 6555 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 136.63 119.86 61576000 15894000 13379000 12372000 4980100 5640600 4175500 0 1705900 0 0 0 0 0 0 0 0 0 0 0 3429500 0 0 0 0 20016 1463 19390 371924;371925;371926;371927;371928;371929;371930;371931 227361;227362;227363 227363 1 TLAWKPDIIR Unmodified 1211.7026 0.70264277 1536 P39401 mdoB Phosphoglycerol transferase I yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.596 30.112 3 0.012593 14127 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 58.699 53.548 131610000 5514600 5150500 5401200 350730 330400 0 11560000 13452000 13462000 2823100 0 0 9610600 10994000 9208000 0 0 0 16019000 14762000 11116000 0 0 1858400 20017 1536 19391 371932;371933;371934;371935;371936;371937;371938;371939;371940;371941;371942;371943;371944;371945;371946;371947 227364;227365;227366 227366 3 TLCLHEGIIPALESSHALAHALK Unmodified 2480.321 0.32096357 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 38.413 36.587 3;4;5 4.2E-22 17591 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 170.98 168.54 790790000 182950000 141890000 163480000 6124200 5013600 4137300 34692000 29464000 26995000 10822000 7827200 11312000 24323000 23509000 17724000 0 0 0 26918000 33861000 29213000 3757800 3616400 3166000 20018 405 19392 371948;371949;371950;371951;371952;371953;371954;371955;371956;371957;371958;371959;371960;371961;371962;371963;371964;371965;371966;371967;371968;371969;371970;371971;371972;371973;371974;371975;371976;371977;371978;371979;371980;371981;371982;371983;371984;371985;371986;371987;371988;371989;371990;371991;371992;371993 227367;227368;227369;227370;227371;227372;227373;227374;227375;227376;227377;227378;227379;227380;227381;227382;227383;227384;227385;227386 227385 20 TLCVVQEGFPTYGGLEGGAMER Oxidation (M) 2386.0933 0.093331398 397 P0A853 tnaA Tryptophanase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 3 2 3 3 3 2 3 3 3 44.565 43.045 2;3 1.1183E-21 20874 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 172.91 172.38 467990000 91570000 81059000 55294000 0 0 0 49054000 22488000 39718000 0 0 0 21761000 21698000 15060000 0 0 0 23095000 23537000 23657000 0 0 0 20019 397 19393 371994;371995;371996;371997;371998;371999;372000;372001;372002;372003;372004;372005;372006;372007;372008;372009;372010;372011;372012;372013;372014;372015;372016;372017;372018;372019;372020;372021;372022;372023;372024;372025 227387;227388;227389;227390;227391;227392;227393;227394;227395;227396;227397;227398;227399;227400;227401;227402;227403;227404;227405;227406;227407;227408;227409;227410 227403 189 24 TLCVVQEGFPTYGGLEGGAMER Unmodified 2370.0984 0.098416776 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 2 2 2 1 2 2 2 2 2 3 3 1 1 1 47.307 45.872 2;3 3.8818E-75 21251 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 307.7 303.4 13677000000 2381000000 2168000000 1987500000 21785000 22873000 21080000 1059700000 1037000000 997050000 0 4304800 5827500 713850000 677260000 701240000 0 0 0 581590000 662200000 630000000 1657300 1354400 1536800 20020 397 19393 372026;372027;372028;372029;372030;372031;372032;372033;372034;372035;372036;372037;372038;372039;372040;372041;372042;372043;372044;372045;372046;372047;372048;372049;372050;372051;372052;372053;372054;372055;372056;372057;372058;372059;372060;372061;372062;372063;372064;372065;372066 227411;227412;227413;227414;227415;227416;227417;227418;227419;227420;227421;227422;227423;227424;227425;227426;227427;227428;227429;227430;227431;227432;227433;227434;227435;227436;227437;227438;227439;227440;227441;227442;227443;227444;227445;227446;227447;227448;227449;227450;227451;227452;227453;227454;227455;227456 227455 45 TLDAAAALAAANK Unmodified 1199.651 0.65100113 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 1 2 1 1 2 2 2 2 2 2 1 1 30.919 29.448 2;3 4.7459E-06 13815 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.58 114.81 1930800000 189260000 174500000 154860000 672720 614890 0 156110000 132340000 156150000 2105600 1588500 0 134890000 135760000 134770000 0 0 0 177550000 191180000 184070000 2285500 2135500 0 20021 62 19394 372067;372068;372069;372070;372071;372072;372073;372074;372075;372076;372077;372078;372079;372080;372081;372082;372083;372084;372085;372086;372087;372088;372089;372090;372091;372092;372093;372094;372095 227457;227458;227459;227460;227461;227462;227463;227464;227465;227466;227467;227468;227469;227470;227471;227472;227473;227474;227475;227476;227477;227478 227462 20 TLDAAAALAAANKR Unmodified 1355.7521 0.75211216 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 25.844 24.689 2;3 7.7148E-20 11388 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 261.16 254.5 2049400000 150000000 177400000 162670000 15194000 12972000 12733000 165010000 147240000 152580000 33900000 32388000 23201000 124850000 108750000 100210000 5732600 4745500 4530300 201090000 187960000 179040000 17124000 15614000 14431000 20022 62 19395 372096;372097;372098;372099;372100;372101;372102;372103;372104;372105;372106;372107;372108;372109;372110;372111;372112;372113;372114;372115;372116;372117;372118;372119;372120;372121;372122;372123;372124;372125;372126;372127;372128;372129;372130;372131;372132;372133;372134;372135;372136;372137;372138;372139;372140 227479;227480;227481;227482;227483;227484;227485;227486;227487;227488;227489;227490;227491;227492;227493;227494;227495;227496;227497;227498;227499;227500;227501;227502;227503;227504;227505;227506;227507;227508;227509;227510;227511;227512;227513;227514;227515;227516 227487 37 TLDEMAQDTWHWQSR Unmodified 1902.8319 0.8318954 202 P09147 galE UDP-glucose 4-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 36.951 35.353 3 3.4851E-06 16972 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.797 93.893 155320000 46679000 54045000 45797000 0 0 0 0 8802100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20023 202 19396 372141;372142;372143;372144 227517;227518;227519 227519 3 TLDEVKPEIAELAETYPEVK Unmodified 2273.1679 0.16785977 302 P0A722 lpxA Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.473 42.958 3 2.8422E-10 21036 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.75 119.32 837600000 124250000 118860000 114310000 0 0 0 61955000 53121000 61079000 0 0 0 52970000 37202000 35795000 0 0 0 57599000 62383000 58075000 0 0 0 20024 302 19397 372145;372146;372147;372148;372149;372150;372151;372152;372153;372154;372155;372156 227520;227521;227522;227523;227524;227525;227526;227527;227528;227529;227530;227531 227526 12 TLDLPHAEPLPR Unmodified 1357.7354 0.73539946 1240 P24193 hypE Hydrogenase isoenzymes formation protein HypE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 2 1 1 28.875 27.606 2;3 3.7823E-05 13016 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 98.898 96.336 170280000 8253600 6695800 6313800 0 0 0 16007000 15742000 16890000 3125500 0 2619600 16279000 18822000 15928000 0 0 610490 14650000 15703000 12643000 0 0 0 20025 1240 19398 372157;372158;372159;372160;372161;372162;372163;372164;372165;372166;372167;372168;372169;372170;372171;372172;372173;372174;372175;372176 227532;227533;227534;227535;227536;227537;227538;227539;227540;227541;227542;227543;227544;227545 227535 13 TLDNLASR Unmodified 888.46649 0.46649483 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 2 1 1 16.018 16.901 2 0.12129 5909 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 44.721 15.572 428950000 17779000 0 0 0 0 0 0 0 0 0 0 0 0 61656000 64735000 0 0 0 137590000 77394000 69791000 0 0 0 20026 1047 19399 372177;372178;372179;372180;372181;372182;372183 227546 227546 1 TLDQLEEK Unmodified 974.49204 0.49204087 466 P0A8W2 slyA Transcriptional regulator SlyA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.587 17.344 2 0.00035513 5805 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 143.89 106.33 375470000 29802000 28619000 28442000 0 0 0 45626000 46646000 48056000 0 0 0 21032000 26111000 22360000 0 0 0 28034000 27241000 23503000 0 0 0 20027 466 19400 372184;372185;372186;372187;372188;372189;372190;372191;372192;372193;372194;372195 227547;227548;227549;227550;227551 227551 3 TLDTIKGEGWAAIVADLRGEALLSK Unmodified 2626.433 0.43301644 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 2 By matching By MS/MS By matching By matching 1 1 1 1 52.915 51.832 4 0.0022954 20838 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 55.061 53.156 23464000 0 0 0 0 0 0 0 0 0 6579000 5589200 4142200 0 0 0 0 0 7153800 0 0 0 0 0 0 20028 1876 19401 372196;372197;372198;372199 227552 227552 1 TLDTQGLR Unmodified 902.48214 0.48214489 1968 Q46938 kduI 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.94 17.474 2 0.0080863 5369 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.006 53.154 368730000 0 0 0 65830000 62462000 63144000 8119400 0 8466400 2811600 2566600 3182600 8724300 7473900 6999500 0 0 0 0 12336000 9390200 34648000 36818000 35762000 20029 1968 19402 372200;372201;372202;372203;372204;372205;372206;372207;372208;372209;372210;372211;372212;372213;372214;372215 227553;227554;227555;227556;227557;227558;227559 227558 1 TLDYQSPLTTTR Unmodified 1394.7042 0.70415892 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 29.391 28.115 2 3.6577E-08 13382 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 161.17 157.16 68490000 0 0 0 0 0 0 22191000 22128000 21018000 0 0 0 0 0 0 0 3153500 0 0 0 0 0 0 0 20030 433 19403 372216;372217;372218;372219 227560;227561;227562 227560 3 TLEEEEIAATVAK Unmodified 1402.7191 0.71914028 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 31.854 30.482 2;3 3.1098E-12 14280 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 185.08 174.82 3212800000 280200000 277890000 233320000 0 1702300 1955500 248800000 218220000 250970000 0 0 0 285110000 249640000 211210000 0 0 0 308530000 325290000 318130000 0 0 1842400 20031 161 19404 372220;372221;372222;372223;372224;372225;372226;372227;372228;372229;372230;372231;372232;372233;372234;372235;372236;372237;372238;372239;372240;372241;372242;372243;372244;372245;372246 227563;227564;227565;227566;227567;227568;227569;227570;227571;227572;227573;227574;227575;227576;227577;227578;227579;227580;227581;227582;227583;227584 227576 20 TLEEPPEHVK Unmodified 1177.5979 0.59790293 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 12.384 13.14 2;3 0.0061473 3825 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.452 76.003 141790000 18238000 17163000 13153000 1705000 0 0 14302000 10872000 11097000 1282900 0 1380100 5253000 7547100 8164700 0 0 0 12575000 8876500 10180000 0 0 0 20032 127 19405 372247;372248;372249;372250;372251;372252;372253;372254;372255;372256;372257;372258;372259;372260;372261;372262;372263;372264 227585;227586;227587 227587 2 TLEEVTGDQMGVTGVR Unmodified 1690.8196 0.81959938 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.704 30.348 2;3 8.9739E-14 14316 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 216.03 195.82 1468500000 152170000 145680000 134050000 0 0 0 101460000 93220000 99160000 0 0 0 107450000 105530000 117560000 0 0 0 144150000 136260000 131870000 0 0 0 20033 543 19406 372265;372266;372267;372268;372269;372270;372271;372272;372273;372274;372275;372276;372277;372278;372279;372280;372281;372282;372283;372284;372285;372286;372287;372288 227588;227589;227590;227591;227592;227593;227594;227595;227596;227597;227598;227599;227600;227601;227602;227603 227596 8 TLEFLGHK Unmodified 943.51272 0.51271674 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.976 21.304 2 0.01112 8660 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.282 66.857 435860000 24439000 25354000 26774000 0 0 0 31656000 39893000 44537000 0 0 0 36282000 31485000 32687000 0 0 0 56592000 52028000 34133000 0 0 0 20034 1073 19407 372289;372290;372291;372292;372293;372294;372295;372296;372297;372298;372299;372300 227604;227605;227606;227607;227608;227609;227610;227611;227612 227607 5 TLEGWGYDYYVFDK Unmodified 1754.7828 0.78280317 1212 P23827 eco Ecotin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.846 49.486 2 1.1627E-06 23894 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 130.01 130.01 1537900000 111140000 106690000 90702000 3655000 3335400 2627700 137710000 158600000 147360000 5819500 5265500 4728900 126620000 107550000 98449000 0 0 0 141640000 140750000 134470000 2722900 4339300 3675600 20035 1212 19408 372301;372302;372303;372304;372305;372306;372307;372308;372309;372310;372311;372312;372313;372314;372315;372316;372317;372318;372319;372320;372321 227613;227614;227615;227616;227617;227618;227619;227620;227621;227622;227623;227624;227625;227626;227627;227628;227629 227623 17 TLELMEEVAK Unmodified 1161.5951 0.59512574 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 36.185 34.683 2 0.0043569 15984 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 75.378 59.716 8051800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8051800 0 0 0 0 20036 58 19409 372322;372323;372324 227630;227631;227632 227632 2 TLENLASQGYIR Unmodified 1363.7096 0.70957864 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.692 30.401 2 2.3874E-09 9976 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 179.1 157.64 330460000 27243000 27762000 28598000 2679200 1931900 1733600 22312000 17924000 20975000 6822100 4554400 0 14843000 16322000 15647000 16338000 15201000 17794000 22681000 22205000 26897000 0 0 0 20037 222 19410 372325;372326;372327;372328;372329;372330;372331;372332;372333;372334;372335;372336;372337;372338;372339;372340;372341;372342;372343;372344 227633;227634;227635;227636 227634 4 TLESAGVK Unmodified 803.43888 0.43888309 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1 1 1 1 1 1 11.71 12.46 2 0.011257 3406 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 77.058 34.058 402010000 0 119230000 0 1897300 1748800 1270500 89123000 100410000 85446000 0 0 2359300 0 0 0 0 0 0 0 0 0 0 520530 0 20038 147 19411 372345;372346;372347;372348;372349;372350;372351;372352;372353;372354;372355;372356 227637;227638;227639;227640;227641;227642;227643 227637 7 TLESILMAAGYK Unmodified 1295.6795 0.67952407 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 47.612 46.238 2 8.0289E-05 21599 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 99.653 76.913 182360000 20986000 20908000 16387000 0 0 0 12215000 11881000 0 0 0 0 12958000 15371000 12447000 0 0 0 18537000 20151000 20515000 0 0 0 20039 177 19412 372357;372358;372359;372360;372361;372362;372363;372364;372365;372366;372367 227644;227645;227646;227647;227648;227649;227650 227650 6 TLESSAVVIGQR Unmodified 1258.6881 0.68811492 1493 P37750 wbbJ Putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.177 24.087 2 2.5943E-05 10981 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 118.18 107.95 165190000 0 0 0 0 0 0 26552000 13066000 14841000 7279200 6315200 7974800 9933300 10915000 8787200 1264000 1260800 0 16661000 16143000 17270000 0 2831700 4092100 20040 1493 19413 372368;372369;372370;372371;372372;372373;372374;372375;372376;372377;372378;372379;372380;372381;372382;372383;372384 227651;227652;227653;227654;227655;227656;227657;227658;227659;227660;227661;227662;227663;227664 227655 11 TLETAFMLPVQDAQHSFR Unmodified 2090.0255 0.025509829 1126 P16686 phnH Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 45.43 43.979 3 2.6531E-17 21445 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 124.69 124.62 161240000 0 0 0 0 0 0 10283000 12154000 9189800 0 0 0 12296000 21257000 12071000 0 0 0 31290000 23972000 28724000 0 0 0 20041 1126 19414 372385;372386;372387;372388;372389;372390;372391;372392;372393;372394 227665;227666;227667;227668;227669;227670;227671 227666 7 TLEVNGETITADHILIATGGR Unmodified 2180.1437 0.14371071 128 P06715 gor Glutathione reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 40.573 39.008 3 1.6505E-15 18197 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 148.44 143.44 168780000 22824000 22225000 0 0 0 0 29281000 0 0 0 0 0 17401000 14530000 14348000 0 0 0 0 22427000 25747000 0 0 0 20042 128 19415 372395;372396;372397;372398;372399;372400;372401;372402 227672;227673;227674;227675;227676;227677;227678 227677 7 TLEWATSSPPPFYNFAVVPHVHER Unmodified 2780.3711 0.37108488 660 P0ABI8 cyoB Cytochrome bo(3) ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 47.015 45.581 3;4 3.5249E-10 18027 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 122.3 121.98 1898800000 75578000 63256000 52169000 27912000 31555000 29616000 85030000 79058000 75708000 55548000 56967000 46149000 103200000 115540000 128640000 11839000 10628000 11044000 204370000 203100000 236520000 70110000 63953000 61300000 20043 660 19416 372403;372404;372405;372406;372407;372408;372409;372410;372411;372412;372413;372414;372415;372416;372417;372418;372419;372420;372421;372422;372423;372424;372425;372426;372427;372428;372429;372430;372431;372432;372433;372434;372435;372436;372437;372438;372439;372440;372441;372442;372443;372444;372445;372446;372447;372448;372449 227679;227680;227681;227682;227683;227684;227685;227686;227687;227688;227689;227690;227691;227692;227693;227694;227695;227696;227697;227698;227699;227700;227701;227702;227703;227704;227705;227706;227707;227708;227709;227710;227711;227712;227713 227694 34 TLFEGQK Unmodified 821.42832 0.42831841 1452 P36995 cspB Cold shock-like protein CspB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 15.512 16.336 2 0.022682 5544 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 74.439 61.231 270180000 9577300 12168000 9828000 0 0 0 0 0 127720000 0 0 0 13390000 13518000 0 0 0 0 26301000 29104000 28572000 0 0 0 20044 1452 19417 372450;372451;372452;372453;372454;372455;372456;372457;372458 227714;227715;227716 227715 3 TLFEPGEMVR Oxidation (M) 1193.5751 0.575059 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 6 6 7 1 4 5 7 2 7 7 6 31.008 29.526 2 0.00029314 11791 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 118.5 103.06 2399400000 0 0 2361700 0 360500 0 2870400 0 0 701300000 603870000 536280000 0 0 2458600 31926000 22567000 19734000 0 0 13596000 155320000 157970000 148800000 20045 936 19418 372459;372460;372461;372462;372463;372464;372465;372466;372467;372468;372469;372470;372471;372472;372473;372474;372475;372476;372477;372478;372479;372480;372481;372482;372483;372484;372485;372486;372487;372488;372489;372490;372491;372492;372493;372494;372495;372496;372497;372498;372499;372500;372501;372502;372503;372504;372505;372506;372507;372508;372509;372510;372511;372512;372513;372514;372515;372516;372517;372518;372519 227717;227718;227719;227720;227721;227722;227723;227724;227725;227726;227727;227728;227729;227730;227731;227732;227733;227734;227735;227736;227737;227738;227739;227740;227741;227742;227743;227744;227745;227746;227747;227748;227749;227750;227751;227752;227753;227754;227755;227756;227757;227758;227759;227760;227761;227762;227763;227764;227765;227766;227767;227768;227769;227770;227771;227772;227773;227774;227775;227776;227777;227778;227779;227780;227781;227782;227783;227784;227785;227786;227787;227788;227789;227790;227791;227792;227793;227794;227795;227796;227797;227798;227799;227800 227737 429 84 TLFEPGEMVR Unmodified 1177.5801 0.58014438 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4 3 3 1 1 1 3 2 3 1 1 1 4 4 3 35.825 34.249 2;3 1.3497E-05 13242 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 152.47 148.33 33118000000 194680000 189810000 165930000 22205000 21674000 20370000 82120000 78599000 82433000 6448900000 6576600000 6113200000 205320000 173770000 183660000 1213400000 769780000 827770000 220800000 241160000 222780000 2966000000 2933900000 3163000000 20046 936 19418 372520;372521;372522;372523;372524;372525;372526;372527;372528;372529;372530;372531;372532;372533;372534;372535;372536;372537;372538;372539;372540;372541;372542;372543;372544;372545;372546;372547;372548;372549;372550;372551;372552;372553;372554;372555;372556;372557;372558;372559;372560;372561;372562;372563 227801;227802;227803;227804;227805;227806;227807;227808;227809;227810;227811;227812;227813;227814;227815;227816;227817;227818;227819;227820;227821;227822;227823;227824;227825;227826;227827;227828;227829;227830;227831;227832;227833;227834;227835;227836;227837;227838;227839;227840;227841;227842;227843;227844;227845;227846;227847;227848;227849;227850;227851;227852;227853;227854;227855;227856;227857;227858;227859;227860;227861;227862;227863;227864;227865;227866;227867;227868;227869;227870;227871;227872;227873;227874;227875;227876 227823 76 TLFGDHER Unmodified 973.46174 0.4617438 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 13.417 14.285 2 0.001419 4509 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.01 99.772 941020000 329970000 327630000 268850000 0 0 0 0 0 0 0 0 0 3557700 0 0 0 0 0 0 4112800 6904500 0 0 0 20047 1305 19419 372564;372565;372566;372567;372568;372569 227877;227878;227879 227877 3 TLFLGYSVAGQR Unmodified 1310.6983 0.69828568 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 39.264 37.411 2 0.0013225 18651 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 73.067 65.846 49758000 0 0 0 0 0 0 16540000 0 0 0 0 0 0 0 0 0 0 0 16329000 16889000 0 0 0 0 20048 51 19420 372570;372571;372572 227880;227881 227880 1 TLFSQVTPGTK Unmodified 1177.6343 0.63428844 1795 P75954 ycfS Probable L,D-transpeptidase YcfS yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 27.307 26.274 2 0.10805 12089 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 41.54 38.132 40024000 0 0 0 0 0 0 0 0 0 0 0 0 4405000 2549900 3258700 0 0 0 9534700 10323000 9952900 0 0 0 20049 1795 19421 372573;372574;372575;372576;372577;372578 227882 227882 0 TLFTVSAGGQPAYSQDFAPLPADIR Unmodified 2621.3126 0.31256695 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 52.409 51.186 2;3 1.9875E-61 25057 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 270.51 264.62 1076400000 363590000 397240000 313070000 1162900 1320100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20050 1919 19422 372579;372580;372581;372582;372583;372584;372585;372586 227883;227884;227885;227886;227887;227888 227886 6 TLGADALEPK Unmodified 1013.5393 0.53932542 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 23.345 22.584 2 0.00063633 9940 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.15 85.326 1654800000 179110000 160730000 153500000 2670100 2026400 2236100 110080000 112030000 114570000 3115400 0 1473700 126860000 96922000 119010000 0 0 0 146930000 152910000 166270000 2010600 0 2391200 20051 561 19423 372587;372588;372589;372590;372591;372592;372593;372594;372595;372596;372597;372598;372599;372600;372601;372602;372603;372604;372605;372606;372607;372608 227889;227890;227891;227892;227893;227894;227895;227896;227897;227898;227899;227900;227901;227902 227890 12 TLGAELLYK Unmodified 1006.5699 0.56989727 1123 P16681 phnB Protein PhnB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.201 31.644 2 0.0038372 14940 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 80.165 72.225 178060000 47772000 50206000 47072000 1980600 1314000 1795100 0 9736700 10393000 0 862890 0 0 1737300 0 0 0 0 3343000 1849900 0 0 0 0 20052 1123 19424 372609;372610;372611;372612;372613;372614;372615;372616;372617;372618;372619;372620 227903;227904;227905 227904 3 TLGDIYLGK Unmodified 978.5386 0.53859714 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.051 30.701 2 0.002965 14731 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 83.265 57.528 3020800000 12477000 11716000 0 0 2373500 2779700 401150000 382930000 370180000 7495800 6245400 5547900 259790000 279350000 270320000 6544700 4751200 4613900 326280000 343680000 317400000 5202700 0 0 20053 994 19425 372621;372622;372623;372624;372625;372626;372627;372628;372629;372630;372631;372632;372633;372634;372635;372636;372637;372638;372639;372640 227906;227907;227908;227909;227910;227911;227912;227913;227914;227915 227909 9 TLGEFIVEK Unmodified 1034.5648 0.56481189 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.832 31.315 2 0.0018271 15225 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 87.308 75.797 1360800000 67389000 63607000 54142000 2231100 2396200 2198800 121840000 111920000 107450000 3417300 0 3486400 129420000 106210000 110710000 0 0 1257300 149840000 161720000 149340000 3951500 4091900 4136900 20054 499 19426 372641;372642;372643;372644;372645;372646;372647;372648;372649;372650;372651;372652;372653;372654;372655;372656;372657;372658;372659;372660;372661 227916;227917;227918;227919;227920;227921;227922;227923;227924;227925;227926;227927;227928;227929;227930 227917 15 TLGGDLGAAIK Unmodified 1014.571 0.5709599 394 P0A843 tatE Sec-independent protein translocase protein TatE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.651 27.36 2 0.10816 12942 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 39.622 25.974 170120000 0 3372400 3526600 1961100 1763500 1747200 14452000 11999000 12814000 6677900 4609700 5131400 9586400 12803000 11800000 1370300 1002500 1013100 16077000 15066000 15035000 5016600 6992800 6297100 20055 394 19427 372662;372663;372664;372665;372666;372667;372668;372669;372670;372671;372672;372673;372674;372675;372676;372677;372678;372679;372680;372681;372682;372683;372684 227931;227932 227931 2 TLGIVGMGR Unmodified 902.50077 0.50077184 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.154 27.819 2 2.4791E-05 12314 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 155.51 107.77 846910000 0 113970000 92669000 0 0 0 69416000 65382000 68702000 0 0 615630 67598000 61798000 69402000 0 0 0 80232000 79284000 77832000 0 0 0 20056 1485 19428 372685;372686;372687;372688;372689;372690;372691;372692;372693;372694;372695;372696 227933;227934;227935;227936;227937;227938;227939;227940;227941;227942;227943 227941 11 TLGLDGFSVK Unmodified 1035.5601 0.56006086 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 38.1 36.545 2 0.00056666 17810 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.692 81.113 416190000 123600000 142670000 129410000 7336300 6829400 6349100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20057 96 19429 372697;372698;372699;372700;372701;372702;372703 227944;227945;227946;227947;227948 227946 5 TLGLTGEEK Unmodified 946.49713 0.49712625 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.959 17.717 2 0.00026334 6241 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.05 94.086 705260000 169270000 165260000 150300000 0 0 0 43813000 43346000 48216000 0 0 0 8479600 8078400 7986300 0 0 0 20108000 21554000 18846000 0 0 0 20058 1254 19430 372704;372705;372706;372707;372708;372709;372710;372711;372712;372713;372714;372715 227949;227950;227951;227952;227953 227953 5 TLGLYPDEVVLR Unmodified 1373.7555 0.7554662 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.168 42.833 2 3.627E-05 20916 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.08 135.57 80934000 0 0 0 0 0 0 7837400 6329900 5952000 0 0 2793200 7760500 3776500 5217500 1478300 1338700 1455300 12096000 10597000 10504000 2081100 1717900 0 20059 1116 19431 372716;372717;372718;372719;372720;372721;372722;372723;372724;372725;372726;372727;372728;372729;372730 227954;227955;227956;227957;227958;227959;227960;227961 227957 8 TLGMYNSGR Unmodified 997.46511 0.46511462 1708 P66948 bepA Beta-barrel assembly-enhancing protease yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.518 17.276 2 0.0011019 6078 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.143 90.456 88677000 9398200 9043700 9547500 0 0 0 8137700 10492000 6975700 0 0 0 5115400 5325500 4315800 0 0 0 5105200 7296500 7923800 0 0 0 20060 1708 19432 372731;372732;372733;372734;372735;372736;372737;372738;372739;372740;372741;372742;372743;372744 227962;227963;227964;227965;227966;227967;227968;227969 227969 8 TLGTAACPPYHIAFVIGGTSAETNLK Unmodified 2688.3581 0.35813694 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 2 1 44.264 42.652 2;3 7.0174E-41 20885 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 289.32 270.49 1426000000 177070000 202520000 159190000 4000100 3101400 3262700 102260000 102850000 95620000 3622200 3804000 3308900 88368000 84956000 83899000 0 0 0 104280000 99792000 101280000 0 2821100 0 20061 696;1097 19433 372745;372746;372747;372748;372749;372750;372751;372752;372753;372754;372755;372756;372757;372758;372759;372760;372761;372762;372763;372764;372765;372766;372767;372768;372769 227970;227971;227972;227973;227974;227975;227976;227977;227978;227979;227980;227981;227982;227983;227984;227985;227986;227987 227981 17 TLGWVAR Unmodified 801.44972 0.44972255 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 24.807 23.748 2 0.0031257 10409 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 101.33 50.79 53569000 0 0 6029500 0 0 0 0 8427000 0 2726600 1723700 1439000 5893900 6191500 4480600 0 167830 0 7461000 8264800 0 763280 0 0 20062 1259 19434 372770;372771;372772;372773;372774;372775;372776;372777;372778;372779;372780;372781;372782 227988;227989;227990;227991;227992;227993;227994;227995 227991 8 TLGYVAQEGESEK Unmodified 1409.6674 0.66743906 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.086 18.69 2 8.091E-09 7106 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 164.33 155.47 318620000 31970000 30221000 29807000 0 0 0 44923000 34092000 37737000 0 0 0 18567000 18203000 17602000 0 0 0 4645200 25865000 24991000 0 0 0 20063 1845 19435 372783;372784;372785;372786;372787;372788;372789;372790;372791;372792;372793;372794 227996;227997;227998;227999;228000;228001;228002;228003 227997 6 TLIDELNLLR Unmodified 1198.6921 0.69213767 223 P0A6A0 ubiB Probable protein kinase UbiB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.477 52.054 2 0.00060121 25895 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 92.439 77.058 54214000 0 2320300 2253300 1400500 1232300 1008700 3919300 3750000 2872100 2047400 1422000 1559800 4274100 3149000 2357000 0 0 0 4825300 6995100 4706700 1438000 1535300 1147900 20064 223 19436 372795;372796;372797;372798;372799;372800;372801;372802;372803;372804;372805;372806;372807;372808;372809;372810;372811;372812;372813;372814 228004;228005 228004 2 TLIETGHPK Unmodified 994.54475 0.54474515 39 P00803 lepB Signal peptidase I yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 12.155 12.611 2 0.0063099 2922 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 71.379 61.073 33802000 0 0 0 2110500 1843700 1928700 0 0 0 5671600 4671800 4763600 0 0 0 0 875530 0 0 0 0 4227200 3930800 3778100 20065 39 19437 372815;372816;372817;372818;372819;372820;372821;372822;372823;372824 228006;228007;228008;228009 228007 4 TLILFSTR Unmodified 949.55967 0.55966693 716 P0ACB4 hemG Protoporphyrinogen IX dehydrogenase [menaquinone] yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 38.719 36.836 2 0.0027006 14563 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 98.299 18.702 19371000 0 0 0 1403700 1315400 1245500 0 0 0 4075700 4542400 4690100 0 0 0 725510 0 0 0 0 0 1372300 0 0 20066 716 19438 372825;372826;372827;372828;372829;372830;372831;372832 228010 228010 1 TLILNNLEFDHADIFDDLK Unmodified 2245.1267 0.12666366 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 53.885 52.462 2;3 2.1955E-22 24709 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 184.48 169.32 1092900000 82578000 84143000 72115000 0 0 0 78097000 69900000 74935000 0 0 0 107910000 105960000 90319000 0 0 0 116950000 108350000 101680000 0 0 0 20067 1500 19439 372833;372834;372835;372836;372837;372838;372839;372840;372841;372842;372843;372844;372845;372846;372847;372848;372849;372850;372851;372852;372853;372854 228011;228012;228013;228014;228015 228015 5 TLIQAVAK Unmodified 842.52255 0.52255314 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 20.095 20.312 2 0.0028476 7418 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.071 16.694 3153000000 247560000 236520000 186640000 3829200 4530300 3660300 275460000 248160000 295200000 12469000 13278000 11962000 224680000 216390000 213150000 1452500 1473900 2222100 328700000 283860000 327560000 4927900 4210500 5064700 20068 59 19440 372855;372856;372857;372858;372859;372860;372861;372862;372863;372864;372865;372866;372867;372868;372869;372870;372871;372872;372873;372874;372875;372876;372877;372878;372879;372880;372881;372882;372883;372884 228016;228017;228018;228019;228020;228021;228022;228023;228024;228025;228026;228027;228028;228029;228030;228031;228032;228033;228034;228035 228035 19 TLIVEAIVR Unmodified 1012.6281 0.62808085 1025 P0AGK4 yhbY RNA-binding protein YhbY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.379 36.763 2 0.00068704 17852 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.83 58.752 306040000 36817000 35163000 35887000 4080300 3670900 3424100 33014000 30293000 24269000 6813400 5765300 7048500 6333100 6701700 4127200 1048200 773260 709130 19295000 17355000 18287000 1504900 1745700 1911900 20069 1025 19441 372885;372886;372887;372888;372889;372890;372891;372892;372893;372894;372895;372896;372897;372898;372899;372900;372901;372902;372903;372904;372905;372906;372907;372908 228036;228037;228038;228039;228040;228041;228042;228043;228044;228045;228046;228047;228048 228045 10 TLLAETLAR Unmodified 986.57605 0.57604528 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.609 29.215 2 1.1389E-07 13691 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 180.93 162.94 2119600000 180410000 164930000 142920000 6650800 6037100 6458100 176110000 168220000 174720000 14035000 17712000 15020000 162700000 162970000 174220000 3963300 3330600 3533400 154150000 176690000 186650000 5470600 5486600 7198900 20070 244 19442 372909;372910;372911;372912;372913;372914;372915;372916;372917;372918;372919;372920;372921;372922;372923;372924;372925;372926;372927;372928;372929;372930;372931;372932 228049;228050;228051;228052;228053;228054;228055;228056;228057;228058;228059;228060;228061;228062;228063;228064;228065;228066;228067;228068 228058 20 TLLALVEK Unmodified 885.55352 0.55351892 206 P09155 rnd Ribonuclease D yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.671 34.114 2 0.013568 16723 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 73.26 28.179 93156000 6341000 6960500 5219100 0 0 0 5808000 10079000 5569400 0 0 0 7454100 8220100 7571900 0 0 0 9450800 9271200 11211000 0 0 0 20071 206 19443 372933;372934;372935;372936;372937;372938;372939;372940;372941;372942;372943;372944 228069;228070 228070 2 TLLAQPLLWMR Unmodified 1340.7639 0.76386282 1785 P75867 ycbZ Putative Lon protease homolog yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.175 51.736 2 0.0047724 25313 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 65.246 55.242 37093000 1980500 2457800 0 0 871370 0 2911200 3514900 3262200 0 0 0 2592800 2866800 3354200 0 0 0 5670700 4021900 3588700 0 0 0 20072 1785 19444 372945;372946;372947;372948;372949;372950;372951;372952;372953;372954;372955;372956 228071;228072;228073 228072 0 TLLAVEIK Unmodified 885.55352 0.55351892 1568 P45464 lpoA Penicillin-binding protein activator LpoA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 36.711 35.271 2 0.0074202 16975 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83.364 24.545 56678000 21749000 19645000 15285000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20073 1568 19445 372957;372958;372959 228074;228075;228076 228075 3 TLLCDPPR Unmodified 970.4906 0.49060109 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.666 20.21 2 0.0011803 7459 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 111.01 94.854 579580000 71201000 56464000 66178000 0 0 0 0 0 0 0 0 0 63335000 58850000 52144000 0 0 2209900 74625000 68765000 65808000 0 0 0 20074 111 19446 372960;372961;372962;372963;372964;372965;372966;372967;372968;372969;372970 228077;228078;228079;228080;228081;228082;228083;228084 228084 8 TLLDIAR Unmodified 800.4756 0.47560295 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.577 29.202 2 0.0016502 13651 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.24 88.29 159790000 21795000 18136000 17279000 0 0 0 10124000 11536000 8294200 1494200 1511600 1022300 10145000 9702900 9063700 1943400 1754100 0 12186000 12086000 11718000 0 0 0 20075 1355 19447 372971;372972;372973;372974;372975;372976;372977;372978;372979;372980;372981;372982;372983;372984;372985;372986;372987 228085;228086;228087;228088;228089;228090;228091 228087 7 TLLDIDNTR Unmodified 1059.556 0.55603811 16 CON__P35527 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 2 2 2 3 2 1 29.555 28.296 2 6.5335E-06 10827 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 171.53 139.18 1212300000 0 11590000 0 22440000 19667000 20343000 0 0 0 304760000 267270000 277530000 0 0 0 17659000 11707000 14582000 0 0 0 82885000 71476000 90352000 + 20076 16 19448 372988;372989;372990;372991;372992;372993;372994;372995;372996;372997;372998;372999;373000;373001;373002;373003;373004;373005;373006;373007 228092;228093;228094;228095;228096;228097;228098;228099;228100;228101;228102;228103;228104;228105;228106 228095 15 TLLEGEESR Unmodified 1032.5088 0.50875357 11;3 CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.808 17.096 2 4.0379E-05 4927 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 151.5 133.12 708460000 0 0 0 34815000 35307000 37030000 0 0 0 92729000 61671000 180940000 0 0 0 15810000 16915000 14212000 0 0 0 37362000 72014000 109650000 + 20077 11;3 19449 373008;373009;373010;373011;373012;373013;373014;373015;373016;373017;373018;373019 228107;228108;228109;228110;228111;228112;228113;228114;228115;228116;228117;228118 228111 12 TLLELTR Unmodified 844.50182 0.5018177 138 P06986 hisC Histidinol-phosphate aminotransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.156 27.9 2 0.00132 12421 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 132.09 65.1 193120000 29197000 21537000 21715000 0 0 0 16358000 15100000 13345000 0 0 0 12324000 12766000 9946600 0 0 0 13737000 14783000 12315000 0 0 0 20078 138 19450 373020;373021;373022;373023;373024;373025;373026;373027;373028;373029;373030;373031 228119;228120;228121 228121 2 TLLESTVWVPGTAAQGEAVVEDSALDLQHWEK Unmodified 3478.7256 0.72562922 973 P0AFZ1 sseB Protein SseB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.361 52.943 3 8.8546E-06 24903 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 80.943 78.701 230050000 22095000 15547000 23506000 0 0 0 0 12437000 0 0 0 0 23652000 30286000 23767000 0 0 0 31434000 23171000 24154000 0 0 0 20079 973 19451 373032;373033;373034;373035;373036;373037;373038;373039;373040;373041 228122 228122 0 TLLGAAAR Unmodified 771.46029 0.46028724 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.697 17.295 2 0.0028476 5232 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 97.071 64.601 199680000 5343600 7846400 8085400 2829100 3796400 3282000 15343000 15531000 14200000 12250000 9723100 8056300 14552000 11754000 10734000 0 0 0 17379000 18037000 17419000 3519000 0 0 20080 1167 19452 373042;373043;373044;373045;373046;373047;373048;373049;373050;373051;373052;373053;373054;373055;373056;373057;373058;373059;373060 228123;228124;228125;228126;228127 228123 5 TLLGTALR Unmodified 843.5178 0.51780212 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 26.937 26.021 2 0.00082641 11722 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.52 80.596 77607000 24856000 28747000 22163000 0 0 0 0 0 0 0 0 0 0 1840800 0 0 0 0 0 0 0 0 0 0 20081 1412 19453 373061;373062;373063;373064 228128;228129;228130 228129 3 TLLGTALRPAATR Unmodified 1339.7936 0.79358304 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.083 23.332 2 0.0032147 10033 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 66.056 27.752 118610000 37605000 34972000 31119000 0 0 417140 0 0 0 0 0 0 2088400 2661400 2825400 0 0 0 0 3637400 3287800 0 0 0 20082 1412 19454 373065;373066;373067;373068;373069;373070;373071;373072;373073 228131;228132;228133 228133 3 TLLIIDANLGQAR Unmodified 1396.8038 0.80381338 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.561 42.95 2 7.1552E-09 17232 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 166.19 154.14 102290000 5839300 6241200 0 1653300 2289600 2400300 6926500 7062100 6614100 4659400 3208800 3498300 8070700 6220800 5807600 0 0 1420700 9082200 9847700 8731800 0 2713800 0 20083 1167 19455 373074;373075;373076;373077;373078;373079;373080;373081;373082;373083;373084;373085;373086;373087;373088;373089;373090;373091;373092 228134;228135;228136;228137;228138 228135 5 TLLIPEHK Unmodified 949.55967 0.55966693 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 17.562 18.194 2 0.0040626 6337 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 83.753 33.626 76973000 7241100 0 8474400 0 0 0 13487000 11758000 10644000 0 0 0 0 14011000 11358000 0 0 0 0 0 0 0 0 0 20084 1262 19456 373093;373094;373095;373096;373097;373098;373099;373100 228139;228140 228139 2 TLLLEAYSWEYPNPR Unmodified 1850.9203 0.9202997 54 P00936 cyaA Adenylate cyclase yes yes 0 0 0 By MS/MS 1 39.796 37.498 3 0.063782 15003 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 27.649 4.7922 161160000 0 0 0 0 0 0 0 0 0 0 0 161160000 0 0 0 0 0 0 0 0 0 0 0 0 20085 54 19457 373101 228141 228141 1 TLLLTFFYR Unmodified 1172.6594 0.65938097 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.253 53.005 2 3.8764E-11 25986 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 206.5 196.08 568670000 27407000 30802000 23097000 3919700 3931400 3736400 32246000 25645000 23146000 49920000 15491000 25917000 33289000 29194000 30613000 11453000 11537000 7746200 46720000 42771000 47675000 18349000 14122000 9938000 20086 883 19458 373102;373103;373104;373105;373106;373107;373108;373109;373110;373111;373112;373113;373114;373115;373116;373117;373118;373119;373120;373121;373122;373123;373124;373125 228142;228143;228144;228145;228146;228147;228148;228149;228150;228151;228152;228153;228154;228155;228156;228157;228158;228159;228160;228161;228162 228152 20 TLLMDEQDHGYALTGDALSQAAIAAANR Oxidation (M) 2931.4032 0.40324923 654 P0ABF6 cdd Cytidine deaminase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 2 1 1 1 2 1 1 2 46.388 44.867 3 5.1416E-11 22249 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.86 120 151520000 0 0 0 0 0 0 23114000 36392000 19336000 0 0 0 8129000 10547000 15814000 0 0 0 12333000 10130000 15727000 0 0 0 20087 654 19459 373126;373127;373128;373129;373130;373131;373132;373133;373134;373135;373136;373137 228163;228164;228165;228166;228167 228163 359 5 TLLMDEQDHGYALTGDALSQAAIAAANR Unmodified 2915.4083 0.40833461 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 3 3 3 3 3 3 3 3 48.412 47.073 2;3;4 2.2806E-122 23330 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 447.57 429.87 6297300000 68268000 82865000 84860000 0 0 0 975700000 900530000 933920000 0 0 0 634060000 518210000 535260000 0 0 0 554480000 518220000 490950000 0 0 0 20088 654 19459 373138;373139;373140;373141;373142;373143;373144;373145;373146;373147;373148;373149;373150;373151;373152;373153;373154;373155;373156;373157;373158;373159;373160;373161;373162;373163;373164;373165;373166;373167;373168;373169;373170 228168;228169;228170;228171;228172;228173;228174;228175;228176;228177;228178;228179;228180;228181;228182;228183;228184;228185;228186;228187;228188;228189;228190;228191;228192;228193;228194;228195;228196;228197;228198;228199;228200;228201;228202 228169 35 TLLQYSPSSTNSQPWHFIVASTEEGK Unmodified 2906.4087 0.40865218 1505 P38489 nfsB Oxygen-insensitive NAD(P)H nitroreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.153 46.805 3 9.3137E-32 22001 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 201.63 199.18 1155800000 94175000 77501000 74668000 0 0 0 141230000 127280000 132770000 0 0 0 53557000 65334000 65598000 0 0 0 121320000 104170000 98164000 0 0 0 20089 1505 19460 373171;373172;373173;373174;373175;373176;373177;373178;373179;373180;373181;373182 228203;228204;228205;228206;228207;228208;228209;228210;228211;228212;228213;228214 228212 12 TLLSAAGYGPQKPLK Unmodified 1542.877 0.87697832 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.993 24.004 2 1.499E-06 10656 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.29 95.634 151400000 13791000 11070000 11142000 0 0 0 13896000 10585000 16069000 0 0 0 8440700 8299600 11353000 0 0 0 17188000 12967000 16596000 0 0 0 20090 1900 19461 373183;373184;373185;373186;373187;373188;373189;373190;373191;373192;373193;373194 228215;228216;228217;228218;228219;228220;228221;228222;228223;228224 228217 10 TLLTQFR Unmodified 877.50215 0.50215205 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.861 27.449 2 0.0012711 12507 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 132.96 116.79 1014400000 66325000 64009000 58826000 2210300 1359000 0 88760000 94557000 87484000 4093400 4349300 3988100 91181000 85692000 85813000 1686700 0 0 100700000 94636000 74265000 2361500 0 2101200 20091 1172 19462 373195;373196;373197;373198;373199;373200;373201;373202;373203;373204;373205;373206;373207;373208;373209;373210;373211;373212;373213;373214 228225;228226;228227;228228;228229;228230;228231;228232 228229 7 TLLTQVAPPGVTAHVVDVAK Unmodified 2015.1415 0.14152586 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 39.181 37.569 2;3 8.0924E-18 17557 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 207.31 206.61 6366200000 129500000 145760000 126530000 20328000 25872000 22216000 742140000 641260000 680540000 285700000 258190000 212270000 338020000 331820000 330420000 279500000 149660000 181330000 456990000 413060000 406570000 64570000 65533000 58412000 20092 1745 19463 373215;373216;373217;373218;373219;373220;373221;373222;373223;373224;373225;373226;373227;373228;373229;373230;373231;373232;373233;373234;373235;373236;373237;373238;373239;373240;373241;373242;373243;373244;373245;373246;373247;373248;373249;373250;373251;373252;373253;373254;373255;373256;373257;373258;373259;373260;373261;373262 228233;228234;228235;228236;228237;228238;228239;228240;228241;228242;228243;228244;228245;228246;228247;228248;228249;228250;228251;228252;228253;228254;228255;228256;228257;228258;228259;228260;228261;228262;228263;228264;228265;228266;228267;228268;228269;228270;228271;228272;228273;228274;228275;228276;228277;228278 228274 46 TLLVGVIKPESPATAAAILASK Unmodified 2149.2722 0.27220569 1884 P77202 dsbG Thiol:disulfide interchange protein DsbG yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.425 44.961 3 4.7457E-10 21765 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 115.36 115.23 408280000 54490000 47337000 38105000 0 0 0 31337000 30753000 31859000 0 0 0 25338000 17485000 23523000 0 0 0 35125000 39832000 33097000 0 0 0 20093 1884 19464 373263;373264;373265;373266;373267;373268;373269;373270;373271;373272;373273;373274 228279;228280;228281;228282;228283 228280 5 TLLVTTGSEAVENAVK Unmodified 1630.8778 0.87776618 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 36.647 34.912 2 3.5296E-19 16825 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 200.76 197.62 812530000 213320000 194530000 187290000 355470 0 0 70734000 71651000 72767000 0 0 1871300 0 0 0 0 0 0 0 0 0 0 0 0 20094 1194 19465 373275;373276;373277;373278;373279;373280;373281;373282 228284;228285;228286;228287 228285 3 TLNAEIVFVMSQGTDTPEQLK Unmodified 2320.1621 0.16206289 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 1 2 2 2 2 2 2 52.901 51.5 2;3 5.8946E-63 24207 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 370.98 370.98 742030000 29953000 32930000 18110000 0 0 0 81913000 83664000 76420000 3639900 2524300 0 93882000 77220000 75151000 0 0 0 61693000 52647000 52279000 0 0 0 20095 539 19466 373283;373284;373285;373286;373287;373288;373289;373290;373291;373292;373293;373294;373295;373296;373297;373298;373299;373300;373301;373302;373303;373304;373305;373306;373307 228288;228289;228290;228291;228292;228293;228294;228295;228296;228297;228298;228299;228300;228301;228302;228303;228304;228305;228306;228307;228308;228309;228310;228311;228312 228307 25 TLNAIDSLAASGAK Unmodified 1330.7092 0.70924429 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 31.026 29.621 2 1.1073E-08 13903 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 154.66 125.93 238790000 78637000 77759000 76391000 0 0 0 2579900 0 3421500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20096 71 19467 373308;373309;373310;373311;373312 228313;228314;228315 228313 3 TLNANIIVDITK Unmodified 1313.7555 0.7554662 1288 P27126 rfaS Lipopolysaccharide core biosynthesis protein RfaS yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 44.223 41.706 2 0.063943 16626 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 43.958 39.507 4450400 0 0 0 0 0 0 0 0 0 1582500 1699000 1168900 0 0 0 0 0 0 0 0 0 0 0 0 20097 1288 19468 373313;373314;373315 228316 228316 0 TLNAYMDK Unmodified 954.44807 0.44806757 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.644 18.088 2 0.0095238 6646 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.906 75.55 218810000 0 0 47952000 907750 618210 681110 0 0 0 3483800 4024200 4416800 0 0 0 0 0 0 67693000 2839500 82450000 1647900 0 2100600 20098 883 19469 373316;373317;373318;373319;373320;373321;373322;373323;373324;373325;373326;373327 228317;228318;228319 228318 3 TLNAYMDKEGYSK Unmodified 1518.7024 0.70244436 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 17.991 18.13 3 0.0080252 5627 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 57.106 53.316 26545000 0 0 0 1428900 1383600 0 0 0 0 6761500 3828300 4448500 0 0 0 1990500 2545300 1895300 0 0 0 0 0 2263200 20099 883 19470 373328;373329;373330;373331;373332;373333;373334;373335;373336 228320 228320 1 TLNDAFIILDESQNTTIEQMK Unmodified 2423.189 0.18900592 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.236 51.806 3 1.0158E-15 25329 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 151.96 148.82 222690000 29187000 25024000 19335000 1976200 1778400 2129600 21116000 18691000 15047000 5193900 3337200 3735300 10639000 8988900 11281000 0 0 0 13814000 15558000 12625000 0 3237900 0 20100 530 19471 373337;373338;373339;373340;373341;373342;373343;373344;373345;373346;373347;373348;373349;373350;373351;373352;373353;373354;373355 228321;228322 228322 2 TLNDAVEVK Unmodified 987.52368 0.52367535 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 17.215 17.785 2 0.00069751 6584 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.56 56.496 4831600000 504490000 509930000 431860000 27016000 21010000 17671000 330070000 287420000 280190000 0 2863600 2773500 318270000 265000000 264130000 32679000 21692000 23960000 516220000 516250000 458090000 0 0 0 20101 987 19472 373356;373357;373358;373359;373360;373361;373362;373363;373364;373365;373366;373367;373368;373369;373370;373371;373372;373373;373374;373375;373376 228323;228324;228325;228326;228327;228328;228329;228330;228331;228332;228333;228334;228335;228336;228337;228338 228324 14 TLNDMRQEYEQLIAK Unmodified 1850.9196 0.91964777 16 CON__P35527 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 39.394 37.509 2;3 4.0743E-11 14899 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 162.32 151.39 755860000 0 0 0 8892700 9411700 7612600 0 0 0 211800000 180590000 189720000 0 0 0 3925800 0 2715200 0 0 0 43757000 50293000 47140000 + 20102 16 19473 373377;373378;373379;373380;373381;373382;373383;373384;373385;373386;373387;373388;373389;373390;373391;373392;373393;373394;373395;373396 228339;228340;228341;228342;228343;228344;228345;228346;228347;228348;228349;228350;228351;228352;228353 228341 15 TLNENQK Unmodified 845.4243 0.42429566 496 P0A978 cspG Cold shock-like protein CspG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 5.0526 5.9717 2 0.0023399 1225 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.02 62.236 80691000 0 0 0 0 0 0 0 0 3546500 0 0 0 3281100 3148800 2726700 0 0 0 24904000 20221000 22863000 0 0 0 20103 496 19474 373397;373398;373399;373400;373401;373402;373403 228354;228355 228355 2 TLNIIMGNK Unmodified 1002.5532 0.55320134 1884 P77202 dsbG Thiol:disulfide interchange protein DsbG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 28.218 27.123 2 0.026798 12518 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.48 46.704 47836000 6002700 5879000 4474200 0 0 0 0 0 0 0 0 0 3745300 0 4215700 0 0 0 6572500 9485800 7460700 0 0 0 20104 1884 19475 373404;373405;373406;373407;373408;373409;373410;373411 228356;228357;228358;228359;228360;228361;228362 228359 0 TLNLNFIK Unmodified 961.55967 0.55966693 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.055 36.375 2 0.00087248 17681 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.57 108.05 763240000 220250000 204720000 183450000 0 805590 0 9211400 11464000 11449000 0 0 0 15474000 15127000 14777000 0 0 0 25643000 23464000 27411000 0 0 0 20105 1111 19476 373412;373413;373414;373415;373416;373417;373418;373419;373420;373421;373422;373423;373424 228363;228364;228365;228366;228367;228368;228369;228370;228371 228363 9 TLNLSEEESR Unmodified 1176.5622 0.5622457 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 17.901 18.542 2 0.00035373 6897 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 108.57 102.91 73417000 0 0 0 0 0 0 0 11509000 0 0 0 0 9484400 10957000 8628500 0 0 0 11150000 11386000 10303000 0 0 0 20106 193 19477 373425;373426;373427;373428;373429;373430;373431 228372;228373;228374 228374 1 TLNLTALYR Unmodified 1063.6026 0.60259438 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.967 36.284 2 9.4115E-16 17560 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 226.54 158.12 3791000000 205940000 188620000 164710000 3715000 3303900 3374400 423220000 434370000 429710000 0 0 0 374400000 340100000 334360000 0 0 0 314370000 286370000 284440000 0 0 0 20107 1184 19478 373432;373433;373434;373435;373436;373437;373438;373439;373440;373441;373442;373443;373444;373445;373446 228375;228376;228377;228378;228379;228380;228381;228382;228383;228384;228385;228386;228387;228388;228389;228390;228391;228392;228393;228394;228395;228396;228397 228380 22 TLNMAMSGMR Unmodified 1110.4984 0.49840536 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 25.708 24.824 2 0.039811 10768 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 53.756 51.948 27833000 5999100 6095900 6498900 0 0 0 0 0 0 0 0 0 3035900 2855400 3347800 0 0 0 0 0 0 0 0 0 20108 1355 19479 373447;373448;373449;373450;373451;373452 228398 228398 1 TLPDADAFGVAR Unmodified 1231.6197 0.619701 227 P0A6B4 alr Alanine racemase, biosynthetic yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 33.841 32.521 2 0.0012415 14685 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 74.162 52.169 32838000 8746100 10033000 0 0 0 0 0 0 1255600 0 0 0 5765600 0 7037800 0 0 0 0 0 0 0 0 0 20109 227 19480 373453;373454;373455;373456;373457;373458 228399;228400;228401;228402 228402 3 TLPDAFMHANIGPSDSPITR Unmodified 2139.0419 0.041888175 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 40.381 38.524 3 1.831E-10 19003 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.33 106.43 370390000 0 0 0 0 0 0 40616000 45562000 60121000 2393100 0 0 40238000 38455000 42550000 0 0 0 33503000 29887000 37070000 0 0 0 20110 1467 19481 373459;373460;373461;373462;373463;373464;373465;373466;373467;373468 228403;228404;228405;228406;228407;228408;228409;228410;228411 228405 9 TLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMDIAEIR Unmodified 4569.9709 0.97091594 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 54.291 52.855 4 9.5059E-18 25932 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 118.8 115.69 177300000 15224000 0 16727000 0 0 0 10623000 12118000 0 0 0 0 13106000 12763000 10250000 0 0 0 32022000 30878000 23583000 0 0 0 20111 292 19482 373469;373470;373471;373472;373473;373474;373475;373476;373477;373478 228412 228412 1 TLPHYCQQQIAIIDAR Unmodified 1925.9782 0.97816571 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 30.945 29.591 2;3 2.2851E-26 13271 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 225.79 216.66 1278300000 0 0 0 0 0 0 163840000 159210000 159280000 0 0 0 141730000 141970000 134380000 1250400 0 0 119680000 132370000 124640000 0 0 0 20112 1467 19483 373479;373480;373481;373482;373483;373484;373485;373486;373487;373488;373489;373490;373491;373492;373493;373494;373495;373496;373497 228413;228414;228415;228416;228417;228418;228419;228420;228421;228422;228423;228424;228425;228426;228427;228428;228429;228430 228430 18 TLPLKPLPLK Unmodified 1118.7427 0.74271667 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 28.712 27.305 2;3 0.0016827 12884 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.643 72.643 508870000 0 0 0 0 0 0 80129000 86443000 68849000 30504000 36255000 36974000 24158000 26831000 26050000 7272200 4866800 4292000 15227000 18993000 17687000 8488200 8837900 7016200 20113 500 19484 373498;373499;373500;373501;373502;373503;373504;373505;373506;373507;373508;373509;373510;373511;373512;373513;373514;373515;373516;373517;373518;373519;373520;373521;373522;373523;373524;373525;373526;373527;373528;373529;373530;373531 228431;228432;228433;228434;228435;228436;228437;228438;228439;228440;228441;228442;228443;228444;228445;228446;228447;228448;228449;228450;228451;228452;228453 228444 23 TLPPEVMANIEAK Unmodified 1411.7381 0.73810158 941 P0AFH2 oppB Oligopeptide transport system permease protein OppB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.395 34.643 2 9.435E-05 12183 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 88.596 77.106 152370000 22563000 22995000 20382000 7354600 7412400 7039200 5254600 4342900 6645600 2641500 3266600 2230200 5692900 5174900 5898600 0 0 0 6739000 7697500 6982200 0 2056700 0 20114 941 19485 373532;373533;373534;373535;373536;373537;373538;373539;373540;373541;373542;373543;373544;373545;373546;373547;373548;373549;373550 228454;228455;228456;228457;228458;228459;228460;228461;228462;228463;228464;228465 228458 11 TLPSGHPK Unmodified 835.4552 0.45520186 1247 P24251 crl Sigma factor-binding protein Crl yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.398 10.979 2 0.016212 2008 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 68.915 65.062 1600400000 210380000 174970000 167110000 0 0 0 0 0 0 0 0 0 42280000 38637000 19247000 519030000 195260000 172430000 28263000 0 32741000 0 0 0 20115 1247 19486 373551;373552;373553;373554;373555;373556;373557;373558;373559;373560;373561 228466;228467;228468;228469;228470;228471 228466 6 TLPTTMEFVDIAGLVK Unmodified 1733.9274 0.92735891 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 54.691 53.251 2;3 3.0862E-06 26405 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 112.86 102.75 1884700000 144230000 148760000 160550000 1258000 2485900 0 116760000 122680000 117700000 0 0 0 156800000 177680000 155390000 0 0 0 198500000 203180000 177630000 1150300 0 0 20116 680 19487 373562;373563;373564;373565;373566;373567;373568;373569;373570;373571;373572;373573;373574;373575;373576;373577;373578;373579;373580;373581;373582;373583;373584;373585;373586;373587;373588 228472;228473;228474;228475;228476;228477;228478;228479;228480;228481;228482;228483;228484;228485 228473 14 TLPWPMLDPR Unmodified 1224.6325 0.6325143 825 P0AE01 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 49.682 48.277 2 0.0021292 23895 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 73.233 69.299 449280000 37175000 0 29573000 0 451200 0 36963000 40731000 36416000 0 1058800 0 49226000 39974000 49020000 0 0 0 41926000 45889000 40874000 0 0 0 20117 825 19488 373589;373590;373591;373592;373593;373594;373595;373596;373597;373598;373599;373600;373601 228486;228487;228488;228489;228490;228491;228492;228493 228487 8 TLQALDAVIR Unmodified 1098.6397 0.63970816 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.728 35.412 2 0.00034748 12783 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 108.98 92.833 86365000 8798200 7074800 7920600 0 0 0 4226700 4807500 4217300 0 0 0 3735700 2620300 3073100 15054000 11475000 8900900 0 3654100 0 0 0 806530 20118 456 19489 373602;373603;373604;373605;373606;373607;373608;373609;373610;373611;373612;373613;373614;373615 228494;228495;228496;228497 228494 4 TLQEDCEK Unmodified 1021.4386 0.4386251 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.621 11.437 2 0.00062085 2743 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.22 111.44 636460000 53183000 50155000 44204000 0 0 0 63801000 75870000 56227000 0 0 0 44012000 50440000 39230000 0 0 0 56566000 54472000 48298000 0 0 0 20119 1375 19490 373616;373617;373618;373619;373620;373621;373622;373623;373624;373625;373626;373627 228498;228499;228500;228501;228502;228503;228504;228505;228506;228507 228502 3 TLQEGMSPER Unmodified 1146.5339 0.53392246 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 14.489 15.283 2 6.6438E-05 5072 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 133.57 133.27 67659000 2089700 0 0 0 0 0 0 4009800 3810600 0 0 0 9589000 8131100 6067700 0 0 0 13116000 10526000 10320000 0 0 0 20120 1070 19491 373628;373629;373630;373631;373632;373633;373634;373635;373636 228508;228509;228510;228511;228512 228509 5 TLQEQYPNDTDLLGR Unmodified 1761.8533 0.85334235 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.511 33.063 2 4.7255E-20 16045 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 243.53 229.29 247510000 25345000 22360000 15506000 0 0 0 34811000 30608000 28933000 0 0 0 17401000 14836000 12735000 0 0 0 14750000 14471000 15757000 0 0 0 20121 709 19492 373637;373638;373639;373640;373641;373642;373643;373644;373645;373646;373647;373648 228513;228514 228513 2 TLQLLAAGAR Unmodified 1012.6029 0.60292873 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.68 28.388 2 0.0031931 13235 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 74.486 55.704 134830000 5573100 5159500 6009100 2840000 1926400 1599100 12933000 15581000 12463000 0 0 0 9712700 10121000 9268600 0 341260 0 11526000 12355000 13112000 0 2395700 1909200 20122 324 19493 373649;373650;373651;373652;373653;373654;373655;373656;373657;373658;373659;373660;373661;373662;373663;373664;373665;373666 228515;228516;228517;228518;228519;228520;228521;228522 228519 1 TLQPVSGSEIDLQLR Unmodified 1654.889 0.88899957 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.755 38.082 2 1.2065E-08 18406 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 146.07 120.68 177360000 16659000 12119000 12717000 0 0 0 17873000 14792000 11579000 0 0 0 12976000 8801000 10836000 0 0 0 21273000 17888000 19848000 0 0 0 20123 35 19494 373667;373668;373669;373670;373671;373672;373673;373674;373675;373676;373677;373678 228523;228524;228525;228526 228525 4 TLQQAVQSGEYSDYQEYAK Unmodified 2207.0019 0.0018570786 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 1 2 2 2 32.974 31.496 2;3 1.3536E-22 15006 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 249.39 249.34 551540000 103880000 85389000 84120000 0 0 0 46377000 42474000 42176000 0 0 555600 24340000 20343000 12235000 0 0 0 27522000 33730000 28407000 0 0 0 20124 218 19495 373679;373680;373681;373682;373683;373684;373685;373686;373687;373688;373689;373690;373691;373692;373693;373694;373695;373696;373697;373698;373699;373700;373701;373702 228527;228528;228529;228530;228531;228532;228533;228534;228535;228536;228537;228538;228539;228540;228541;228542;228543 228535 16 TLQQGIQLAQSR Unmodified 1341.7365 0.7364621 41 P00811 ampC Beta-lactamase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.319 23.423 2 2.5186E-06 10414 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 162.36 159.38 107620000 14387000 12564000 11327000 0 0 0 6101000 7040800 6078500 0 0 0 7358200 5061900 7770700 0 0 0 10403000 10529000 8994600 0 0 0 20125 41 19496 373703;373704;373705;373706;373707;373708;373709;373710;373711;373712;373713;373714 228544;228545;228546;228547;228548;228549;228550;228551;228552;228553 228546 10 TLQQLNASIAVEGLDAK Unmodified 1769.9523 0.95232811 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.618 39.92 2 3.8729E-24 19765 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 208 201.56 242070000 41151000 35826000 32986000 0 0 0 20923000 22014000 20139000 0 0 0 8506700 8236500 10212000 0 0 0 15866000 12152000 14061000 0 0 0 20126 1420 19497 373715;373716;373717;373718;373719;373720;373721;373722;373723;373724;373725;373726 228554;228555;228556;228557;228558;228559;228560 228556 7 TLQQQIIK Unmodified 970.58113 0.58113065 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.697 19.262 2 0.0037689 7474 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.369 61.151 342440000 40008000 39949000 31860000 0 0 0 46778000 48581000 48017000 0 0 0 12599000 16165000 11004000 0 0 0 13839000 18763000 14881000 0 0 0 20127 1154 19498 373727;373728;373729;373730;373731;373732;373733;373734;373735;373736;373737;373738 228561;228562;228563;228564;228565 228562 2 TLQSDAGQLVGGHYEVSGHSIR Unmodified 2310.1353 0.13527129 1785 P75867 ycbZ Putative Lon protease homolog yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 28.235 26.645 4 0.071462 9964 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 32.956 29.858 43644000 0 0 0 1909100 1874800 1776700 0 0 0 8811300 9758200 6139800 0 2304200 0 0 0 0 0 0 0 3527000 3733300 3809600 20128 1785 19499 373739;373740;373741;373742;373743;373744;373745;373746;373747;373748 228566 228566 1 TLQSDEPMPVAR Unmodified 1342.6551 0.65510023 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 22.055 22.095 2 3.7698E-08 8568 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 160.59 153.21 106320000 0 0 0 0 0 0 12955000 0 9680700 0 0 0 15311000 10806000 12334000 0 0 0 14240000 16167000 14830000 0 0 0 20129 193 19500 373749;373750;373751;373752;373753;373754;373755;373756 228567;228568;228569;228570;228571 228571 5 TLQYGEALDDLLTAIK Unmodified 1762.9353 0.93528106 335 P0A7E1 pyrD Dihydroorotate dehydrogenase (quinone) yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.13 53.668 2 2.5705E-06 19771 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 99.531 86.103 175430000 22082000 19338000 15614000 6461200 11275000 8972500 7366300 3964900 3843800 2508000 4448200 0 0 0 13443000 0 0 0 15342000 16192000 13755000 3544900 3857700 3416700 20130 335 19501 373757;373758;373759;373760;373761;373762;373763;373764;373765;373766;373767;373768;373769;373770;373771;373772;373773;373774 228572;228573 228572 2 TLREQAQAR Unmodified 1071.5785 0.57850489 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 10.268 11.17 2 0.00027707 2365 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 133.13 84.34 73849000 0 0 0 0 0 0 0 0 0 0 0 0 25434000 22300000 0 0 0 0 15372000 0 10743000 0 0 0 20131 38 19502 373775;373776;373777;373778;373779 228574;228575;228576 228576 3 TLRNIQR Unmodified 899.5301 0.53009814 1263 P25552 gppA Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase yes yes 0 0 1 By matching By MS/MS By MS/MS 1 1 1 12.749 12.737 2 0.04774 2843 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 69.432 40.904 138480000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 80219000 29158000 29098000 0 0 0 0 0 0 20132 1263 19503 373780;373781;373782 228577;228578 228577 2 TLSDAGCR Unmodified 878.39162 0.39161532 314 P0A761 nanE Putative N-acetylmannosamine-6-phosphate 2-epimerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 10.866 11.677 2 0.026418 2837 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 64.757 60.904 88230000 19022000 16292000 18752000 0 0 0 0 0 0 0 0 0 15311000 0 9536500 0 0 0 0 9315900 0 0 0 0 20133 314 19504 373783;373784;373785;373786;373787;373788 228579 228579 1 TLSDQACQEMDSK Unmodified 1511.6232 0.62320776 1277 P25894 loiP Metalloprotease LoiP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.538 18.041 2 4.2576E-09 6629 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 171.92 171.42 105200000 10066000 10476000 8478600 1121000 1462100 1333500 8175600 6962600 7399700 1458300 1431400 1540100 4323100 4824000 5129300 0 0 0 10697000 8816400 8188200 1305000 876480 1136200 20134 1277 19505 373789;373790;373791;373792;373793;373794;373795;373796;373797;373798;373799;373800;373801;373802;373803;373804;373805;373806;373807;373808;373809 228580;228581;228582;228583;228584;228585;228586;228587;228588;228589 228583 10 TLSFVTRWR Unmodified 1164.6404 0.64037687 1923 P77649 ydiU UPF0061 protein YdiU yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 20.111 20.367 3 0.13984 8270 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 25.574 17.531 23894000 0 0 0 1296500 1427000 1790500 6472200 5675700 0 0 0 3970900 0 0 2383900 0 0 0 0 0 0 0 0 876740 20135 1923 19506 373810;373811;373812;373813;373814;373815;373816;373817 228590 228590 1 TLSGQTTEAFYNSLR Unmodified 1686.8213 0.82131394 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 37.601 35.359 2 1.5843E-08 14246 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 176.78 167.77 15043000 0 0 0 1983500 1306100 0 0 0 0 4423400 3710400 3619600 0 0 0 0 0 0 0 0 0 0 0 0 20136 1083 19507 373818;373819;373820;373821;373822 228591;228592;228593;228594 228591 4 TLSHEPGK Unmodified 867.44503 0.4450311 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 5.3927 6.4064 2 0.0030245 1342 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 95.352 84.536 12091000 0 0 0 461190 531630 570650 0 0 0 0 0 0 3745100 0 3404100 0 0 0 0 0 3378500 0 0 0 20137 1728 19508 373823;373824;373825;373826;373827;373828;373829 228595;228596;228597;228598 228595 4 TLSLGVVIPDITFHLAK Unmodified 1823.0557 0.05567097 1542 P39452 nrdE Ribonucleoside-diphosphate reductase 2 subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 53.808 52.411 3 0.0059108 25724 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 48.053 47.882 22344000 4004300 4591000 4059600 0 0 0 0 0 0 0 0 0 0 2253700 0 0 0 0 3358100 2623600 1453200 0 0 0 20138 1542 19509 373830;373831;373832;373833;373834;373835;373836 228599 228599 1 TLSNGKPVTK Unmodified 1043.5975 0.597509 195 P08997 aceB Malate synthase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.241 11.038 2 5.5985E-05 2479 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.58 103.18 166500000 118270000 0 0 0 0 0 7445800 13342000 12016000 0 0 0 0 10057000 5369900 0 0 0 0 0 0 0 0 0 20139 195 19510 373837;373838;373839;373840;373841;373842;373843;373844 228600;228601;228602 228601 3 TLSNPFWVDMK Unmodified 1336.6486 0.64855829 1516 P39265 alsB D-allose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.414 45.129 2 0.0026717 22047 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.893 59.71 54925000 13461000 10668000 12725000 0 0 0 0 0 0 0 0 0 6260400 6272200 5539300 0 0 0 0 0 0 0 0 0 20140 1516 19511 373845;373846;373847;373848;373849;373850 228603;228604;228605 228604 3 TLSPYLQEVAK Unmodified 1247.6762 0.67615325 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 31.824 30.472 2 0.00013265 13667 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 113.62 88.631 695620000 57252000 60457000 57514000 574180 0 0 44423000 43614000 39528000 0 0 0 45988000 52856000 47698000 0 0 0 79007000 80090000 86623000 0 0 0 20141 346 19512 373851;373852;373853;373854;373855;373856;373857;373858;373859;373860;373861;373862;373863 228606;228607;228608;228609;228610;228611;228612;228613;228614;228615 228615 8 TLSSQHYLVITALGADRPGIVNTITR Unmodified 2795.5294 0.52937644 524 P0A9I3 gcvR Glycine cleavage system transcriptional repressor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.069 40.37 3;4 3.3814E-22 20196 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 161.68 149.37 664660000 77768000 78896000 62989000 0 0 0 62860000 58645000 59557000 0 0 0 33724000 43574000 37759000 0 0 0 48822000 47421000 52640000 0 0 0 20142 524 19513 373864;373865;373866;373867;373868;373869;373870;373871;373872;373873;373874;373875;373876;373877;373878;373879;373880;373881;373882;373883;373884;373885;373886;373887 228616;228617;228618;228619;228620;228621;228622;228623;228624;228625;228626;228627;228628;228629;228630 228617 15 TLSTNPLVWR Unmodified 1185.6506 0.6506072 1838 P76227 ynjH Uncharacterized protein YnjH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 37.667 35.993 2 2.0834E-06 17316 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 182.39 144.83 203550000 63471000 52497000 52211000 0 0 0 3995300 5387300 5958900 0 0 0 2121400 2388300 4248300 0 0 0 5203000 2643800 3425500 0 0 0 20143 1838 19514 373888;373889;373890;373891;373892;373893;373894;373895;373896;373897;373898;373899 228631;228632;228633;228634;228635;228636;228637 228633 4 TLTASSSSR Unmodified 908.45632 0.45632407 181 P08244 pyrF Orotidine 5'-phosphate decarboxylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.426 11.242 2 0.00019484 2490 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 127.02 127.02 677190000 85564000 79987000 61464000 0 0 0 36130000 30349000 35970000 0 0 0 43255000 54109000 44270000 0 0 0 70333000 71549000 64207000 0 0 0 20144 181 19515 373900;373901;373902;373903;373904;373905;373906;373907;373908;373909;373910;373911 228638;228639;228640 228640 2 TLTATLPAYLNALTGK Unmodified 1646.9243 0.92432245 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 52.61 51.474 2;3 2.3535E-10 20758 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 150.49 137.91 1075700000 42595000 42161000 37682000 9253000 9403000 8158900 9157400 12389000 61345000 108200000 109860000 91323000 40733000 39374000 51450000 27335000 45574000 41985000 74572000 56339000 63794000 9394700 43356000 40217000 20145 1057 19516 373912;373913;373914;373915;373916;373917;373918;373919;373920;373921;373922;373923;373924;373925;373926;373927;373928;373929;373930;373931;373932;373933;373934;373935;373936;373937;373938;373939;373940;373941;373942;373943;373944;373945;373946;373947;373948;373949;373950;373951;373952;373953;373954;373955;373956;373957 228641;228642;228643;228644;228645;228646;228647;228648;228649;228650;228651;228652;228653;228654;228655;228656;228657;228658;228659;228660;228661;228662;228663;228664;228665;228666;228667;228668;228669;228670;228671;228672;228673;228674;228675 228650 31 TLTAVDCCLMVIDAAK Unmodified 1779.8569 0.85691286 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.553 44.096 2 9.0056E-09 21832 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 130.69 124.84 305190000 25228000 27718000 21041000 0 0 0 22014000 21162000 16044000 0 0 0 0 31267000 24856000 0 0 0 34538000 39844000 41477000 0 0 0 20146 346 19517 373958;373959;373960;373961;373962;373963;373964;373965;373966;373967;373968;373969 228676;228677;228678;228679;228680;228681;228682 228676 6 TLTDEDIAGYVASDEPLDK Unmodified 2050.9583 0.95826093 1261 P25536 yhdE Maf-like protein YhdE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.958 42.443 2 1.7778E-17 20704 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 169.04 165.03 111260000 12934000 11126000 10260000 0 0 0 6541300 6501200 5989900 0 0 0 9096300 8092100 9220000 0 0 0 9616600 9078100 12809000 0 0 0 20147 1261 19518 373970;373971;373972;373973;373974;373975;373976;373977;373978;373979;373980;373981 228683 228683 1 TLTDKLTNIDNTWNQR Unmodified 1931.9701 0.97010344 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 33.483 32.567 3 5.4581E-07 12831 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.387 76.946 6388100 0 0 0 0 0 0 0 0 0 3429500 0 0 0 0 0 1529600 1429000 0 0 0 0 0 0 0 20148 807 19519 373982;373983;373984 228684 228684 1 TLTGHLAMYHFSPTETSR Unmodified 2047.9786 0.97855964 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.247 26.078 4 0.0037464 11811 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 52.52 47.091 114400000 8773800 0 9814800 0 0 0 14987000 10403000 12661000 0 0 0 8936600 8517200 8107400 0 0 0 7752600 11934000 12516000 0 0 0 20149 1306 19520 373985;373986;373987;373988;373989;373990;373991;373992;373993;373994;373995 228685 228685 1 TLTHDTR Unmodified 842.42463 0.42463001 313 P0A759 nagB Glucosamine-6-phosphate deaminase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.8841 5.7721 2 0.010767 1161 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 86.472 58.05 409680000 0 0 0 0 0 0 53903000 55536000 66737000 0 0 0 38781000 32360000 33276000 0 0 0 41082000 45033000 42974000 0 0 0 20150 313 19521 373996;373997;373998;373999;374000;374001;374002;374003;374004 228686;228687;228688 228687 3 TLTIPCK Unmodified 831.45242 0.45242467 1679 P64503 yebV Uncharacterized protein YebV yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.864 19.366 2 0.058448 7664 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 61.494 53.165 644510000 97548000 92358000 76207000 0 0 0 143340000 0 131370000 1696300 0 0 9933800 9047700 8584300 0 0 0 24640000 25326000 24452000 0 0 0 20151 1679 19522 374005;374006;374007;374008;374009;374010;374011;374012;374013;374014;374015;374016 228689;228690 228689 2 TLTISDNGVGMTR Unmodified 1363.6766 0.67656396 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 29.138 27.891 2 2.478E-17 13255 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 207.34 200.67 627480000 77748000 68346000 68001000 0 0 0 55715000 0 0 0 0 8004500 51536000 59518000 56209000 0 0 0 53936000 62281000 66185000 0 0 0 20152 295 19523 374017;374018;374019;374020;374021;374022;374023;374024;374025;374026;374027 228691;228692;228693;228694;228695;228696;228697;228698 228691 8 TLTLLGENTEEGR Unmodified 1431.7205 0.72053726 977 P0AG14 sohB Probable protease SohB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.608 30.014 2 4.0444E-07 14328 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 179.57 168.48 158650000 10265000 0 5701400 0 0 0 19324000 17711000 18519000 2691500 2762200 1534600 11805000 12621000 13414000 0 0 0 15983000 15022000 11292000 0 0 0 20153 977 19524 374028;374029;374030;374031;374032;374033;374034;374035;374036;374037;374038;374039;374040;374041 228699;228700;228701;228702;228703 228701 5 TLTLSGMLAEAIR Unmodified 1374.7541 0.754086 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 2 53.323 52.069 2;3 1.0408E-12 19346 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 197.06 192.45 3599200000 284110000 288890000 309440000 1909000 1393900 13901000 194900000 182970000 186640000 13017000 11972000 12390000 320150000 382530000 348490000 16712000 17701000 42463000 244260000 297890000 334440000 35465000 32575000 24985000 20154 300 19525 374042;374043;374044;374045;374046;374047;374048;374049;374050;374051;374052;374053;374054;374055;374056;374057;374058;374059;374060;374061;374062;374063;374064;374065;374066;374067;374068;374069;374070;374071;374072;374073;374074;374075;374076;374077;374078;374079;374080;374081;374082;374083;374084;374085 228704;228705;228706;228707;228708;228709;228710;228711;228712;228713;228714;228715;228716;228717;228718;228719;228720;228721;228722;228723;228724;228725;228726;228727;228728;228729;228730;228731;228732;228733;228734;228735;228736;228737 228706 32 TLTLSGMLAEAIRR Unmodified 1530.8552 0.85519702 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 47.143 46.085 3 5.2727E-07 18424 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 130.1 124.94 79274000 0 0 0 7218200 7340600 5846400 0 0 0 0 2935300 0 0 0 0 7534100 8582700 12900000 0 0 0 7730900 10342000 8843200 20155 300 19526 374086;374087;374088;374089;374090;374091;374092;374093;374094;374095 228738;228739;228740;228741;228742;228743;228744;228745;228746;228747 228742 9 TLTNGCICCSR Unmodified 1340.5635 0.56352481 1242 P24203 yjiA Uncharacterized GTP-binding protein YjiA yes yes 0 0 0 By MS/MS 1 15.479 16.384 2 3.6331E-05 5603 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 102.06 98.044 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20156 1242 19527 374096 228748 228748 1 TLTPDVPVLSEEDPPGWEVR Unmodified 2235.1059 0.10592822 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 50.856 49.597 2 9.5234E-30 24448 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 208.15 203.52 282980000 54070000 48807000 41896000 0 0 714130 18682000 18602000 19968000 0 0 0 10903000 12207000 12640000 0 0 0 14460000 14466000 15566000 0 0 0 20157 1193 19528 374097;374098;374099;374100;374101;374102;374103;374104;374105;374106;374107;374108;374109 228749;228750;228751;228752;228753;228754;228755;228756;228757;228758;228759;228760 228750 12 TLTPQQQR Unmodified 970.51959 0.51959303 955 P0AFM4 psiF Phosphate starvation-inducible protein PsiF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 11.135 11.976 2 0.00062514 2879 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 130.04 98.736 454950000 48333000 46555000 0 0 0 0 77420000 0 74892000 0 0 0 57809000 59196000 50766000 0 0 0 39977000 0 0 0 0 0 20158 955 19529 374110;374111;374112;374113;374114;374115;374116;374117;374118 228761;228762;228763;228764;228765;228766;228767;228768 228766 5 TLTPSLR Unmodified 786.45995 0.45995289 751 P0ACV6 mpaA Protein MpaA yes yes 0 0 0 By MS/MS 1 18.781 19.136 2 0.0060912 7337 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 92.191 45.424 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20159 751 19530 374119 228769 228769 1 TLTQAHLWLSPLHDETR Unmodified 2017.0381 0.038123426 1698 P64612 zapE Cell division protein ZapE yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 33.772 31.447 3 0.017569 12167 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 47.568 43.6 8675500 0 0 0 0 0 0 0 0 0 2709200 1961800 1783700 0 0 0 0 0 0 0 0 0 2220800 0 0 20160 1698 19531 374120;374121;374122;374123 228770;228771 228770 0 TLTQEDVEALEK Unmodified 1374.6878 0.68784015 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.654 27.348 2 8.1563E-07 12624 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.54 138.33 3312700000 293040000 229940000 194860000 0 0 934240 319730000 379910000 343950000 0 0 1444300 235050000 212260000 237210000 0 0 0 296660000 288780000 278930000 0 0 0 20161 445 19532 374124;374125;374126;374127;374128;374129;374130;374131;374132;374133;374134;374135;374136;374137 228772;228773;228774;228775;228776;228777;228778;228779;228780;228781;228782;228783 228775 12 TLTQEDVEALEKR Unmodified 1530.789 0.78895118 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.9 23.797 3 0.0034519 7633 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 62.042 50.997 85912000 0 0 0 2759200 2609200 2848300 0 0 0 3545300 3209200 3844900 0 0 0 0 0 754970 20997000 0 35836000 3301300 3399400 2807900 20162 445 19533 374138;374139;374140;374141;374142;374143;374144;374145;374146;374147;374148;374149 228784;228785;228786 228786 2 TLTQTLNEK Unmodified 1046.5608 0.56078914 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 14.907 15.655 2 5.9448E-05 5210 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146.58 106.48 218510000 44857000 47360000 44540000 0 0 0 0 50513000 0 0 0 0 0 0 0 0 0 0 12622000 9165900 9451800 0 0 0 20163 106 19534 374150;374151;374152;374153;374154;374155;374156 228787;228788;228789;228790;228791;228792 228791 3 TLVAEPSVFLLDEPLSNLDAALR Unmodified 2482.3319 0.33190541 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 2 1 2 2 2 2 1 2 2 2 2 2 2 2 2 55.624 54.171 2;3 4.553E-103 26582 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 348.49 337.76 982140000 8658500 0 3003000 5032400 2808000 3609500 48338000 21129000 43733000 94719000 83210000 87257000 28881000 58838000 63257000 0 0 0 93751000 80499000 85183000 52408000 65233000 52595000 20164 1718 19535 374157;374158;374159;374160;374161;374162;374163;374164;374165;374166;374167;374168;374169;374170;374171;374172;374173;374174;374175;374176;374177;374178;374179;374180;374181;374182;374183;374184;374185;374186;374187;374188;374189;374190;374191 228793;228794;228795;228796;228797;228798;228799;228800;228801;228802;228803;228804;228805;228806;228807;228808;228809;228810;228811;228812;228813;228814;228815 228809 23 TLVAGVNVPVQVGGGVR Unmodified 1620.9311 0.93113916 1054 P10371 hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.097 39.432 2 1.0295E-24 19052 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 221.09 212.36 201620000 23699000 20666000 20442000 0 0 0 18985000 18764000 17252000 0 0 0 12098000 12214000 12882000 0 0 0 15883000 12892000 15839000 0 0 0 20165 1054 19536 374192;374193;374194;374195;374196;374197;374198;374199;374200;374201;374202;374203 228816;228817;228818;228819;228820;228821;228822;228823;228824 228821 9 TLVAVMENYQQADGR Unmodified 1693.8094 0.80936904 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 1 1 1 36.191 34.599 2 2.0509E-27 15956 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 242.82 237.16 2334700000 183740000 179830000 152800000 1190400 1291200 0 225040000 223260000 195180000 0 0 0 209350000 200770000 183940000 0 0 0 192570000 179810000 205970000 0 0 0 20166 441 19537 374204;374205;374206;374207;374208;374209;374210;374211;374212;374213;374214;374215;374216;374217;374218 228825;228826;228827;228828;228829;228830;228831;228832;228833;228834;228835;228836;228837;228838;228839;228840;228841;228842 228840 18 TLVDGIR Unmodified 772.4443 0.44430282 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 19.424 19.866 2 0.0060552 8344 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.071 40.561 910320000 80432000 80066000 67380000 0 0 0 111670000 97722000 94522000 514040 0 0 56951000 49763000 52011000 0 0 0 74315000 73077000 71903000 0 0 0 20167 154 19538 374219;374220;374221;374222;374223;374224;374225;374226;374227;374228;374229;374230;374231;374232;374233;374234;374235;374236;374237;374238;374239;374240;374241;374242;374243 228843;228844;228845;228846;228847;228848;228849;228850;228851;228852;228853;228854;228855;228856;228857;228858 228855 8 TLVFELEWNK Unmodified 1277.6656 0.66558856 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 49.493 48.097 2 0.00014602 23047 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 126.24 118.31 419630000 35047000 37603000 31032000 1066500 924840 1111100 30696000 33000000 29013000 1699700 0 1992600 39842000 34342000 36272000 0 0 0 32248000 39788000 33023000 0 0 926300 20168 161 19539 374244;374245;374246;374247;374248;374249;374250;374251;374252;374253;374254;374255;374256;374257;374258;374259;374260;374261;374262;374263;374264 228859;228860;228861;228862;228863;228864;228865;228866;228867;228868;228869;228870;228871;228872;228873;228874;228875;228876;228877;228878 228867 12 TLVFSDNLDLR Unmodified 1291.6772 0.67721588 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.534 40.986 2 1.6628E-06 20329 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.3 102.1 130110000 8453100 8285900 8237400 0 0 0 0 0 0 0 0 0 16999000 14076000 15936000 0 0 0 19669000 19800000 18654000 0 0 0 20169 1148 19540 374265;374266;374267;374268;374269;374270;374271;374272;374273;374274;374275;374276 228879;228880;228881;228882;228883;228884;228885;228886;228887;228888;228889 228881 8 TLVGDLQPDSGTVK Unmodified 1428.746 0.74602373 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 29.006 27.628 2 1.1888E-05 12174 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 105.46 82.141 998240000 66841000 69147000 67198000 706160 739800 0 81603000 71929000 63564000 0 735680 738290 93546000 81269000 77629000 0 0 0 101530000 110170000 110910000 0 0 0 20170 558 19541 374277;374278;374279;374280;374281;374282;374283;374284;374285;374286;374287;374288;374289;374290;374291;374292;374293 228890;228891;228892;228893;228894;228895;228896;228897;228898;228899;228900 228900 11 TLVGSEYNTR Unmodified 1138.5619 0.56185177 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.229 17.043 2 4.7873E-05 6051 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.69 145.9 494860000 62393000 58072000 64418000 0 0 0 64950000 57908000 68290000 0 0 0 15951000 14667000 16053000 0 0 0 32088000 19172000 20901000 0 0 0 20171 278 19542 374294;374295;374296;374297;374298;374299;374300;374301;374302;374303;374304;374305 228901;228902;228903;228904;228905;228906;228907;228908;228909 228902 9 TLVHDAQQHTDFVR Unmodified 1665.8223 0.82231699 1886 P77212 rclA Probable pyridine nucleotide-disulfide oxidoreductase RclA yes yes 0 0 0 By MS/MS 1 16.937 17.685 2 3.6738E-08 6291 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.71 135.13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20172 1886 19543 374306 228910 228910 1 TLVHLTQTK Unmodified 1039.6026 0.60259438 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.652 14.324 2 8.3103E-06 4405 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 169.09 150.31 645370000 22531000 23478000 19148000 0 0 0 95104000 79728000 74393000 2839200 1638000 2275500 74121000 0 62045000 0 0 0 57199000 57012000 73861000 0 0 0 20173 1468 19544 374307;374308;374309;374310;374311;374312;374313;374314;374315;374316;374317;374318;374319;374320;374321 228911;228912;228913;228914;228915;228916;228917;228918;228919;228920;228921;228922;228923 228915 13 TLVLVIGESTQR Unmodified 1314.7507 0.75071518 1047 P0CB39 eptC Phosphoethanolamine transferase EptC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 37.385 35.335 2 0.01466 13998 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 74.841 72.441 21084000 0 0 0 0 1052900 0 0 4919700 0 2555500 2454500 2070000 2464300 2969100 0 0 0 0 0 0 0 0 1134800 1463600 20174 1047 19545 374322;374323;374324;374325;374326;374327;374328;374329;374330 228924;228925 228924 0 TLVLYRPTK Unmodified 1089.6546 0.65462995 1025 P0AGK4 yhbY RNA-binding protein YhbY yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.87 19.354 3 0.0017698 7533 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 80.688 59.95 336920000 48083000 60735000 48050000 4511200 4441600 4066600 19382000 28328000 28154000 0 0 0 8942000 6500800 5079700 0 0 0 21225000 20417000 22348000 2461100 2105800 2093600 20175 1025 19546 374331;374332;374333;374334;374335;374336;374337;374338;374339;374340;374341;374342;374343;374344;374345;374346;374347;374348 228926;228927;228928 228927 3 TLVQCGVVAK Unmodified 1073.5903 0.59031513 552 P0A9S1 fucO Lactaldehyde reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.813 18.462 2 0.0019852 7076 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.548 65.886 140830000 14443000 10518000 9662800 0 0 0 23144000 21611000 21851000 0 0 0 9448400 8790700 8716100 0 0 0 5316600 3847500 3478700 0 0 0 20176 552 19547 374349;374350;374351;374352;374353;374354;374355;374356;374357;374358;374359;374360 228929;228930;228931;228932;228933;228934;228935 228929 5 TLVSALAR Unmodified 829.50215 0.50215205 1905 P77434 alaC Glutamate-pyruvate aminotransferase AlaC yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.88 23.009 2 0.01629 9922 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.787 38.118 122750000 23277000 23049000 16178000 774990 602300 680390 8064000 6533400 0 0 0 917830 6105700 5216200 4552500 0 0 0 11223000 8499100 7074000 0 0 0 20177 1905 19548 374361;374362;374363;374364;374365;374366;374367;374368;374369;374370;374371;374372;374373;374374;374375 228936 228936 1 TLVSSAMIDR Unmodified 1091.5645 0.56449431 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 27.121 25.821 2 1.3774E-05 11996 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 152.34 142.75 1641200000 155170000 0 0 0 0 0 175500000 146100000 158740000 1481900 0 0 163650000 154180000 163210000 0 0 0 168300000 187380000 167520000 0 0 0 20178 1450 19549 374376;374377;374378;374379;374380;374381;374382;374383;374384;374385;374386 228937;228938;228939;228940;228941 228938 5 TLVTSIANSAPGR Unmodified 1285.699 0.69901396 1428 P33607 nuoL NADH-quinone oxidoreductase subunit L yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 2 1 1 1 1 2 2 2 2 1 1 1 2 2 2 1 1 1 27.384 26.196 2;3 4.7654E-18 12228 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 222.28 217.5 389350000 14298000 14648000 14179000 2887800 4976900 3054800 30205000 20583000 23358000 10190000 12462000 14758000 25443000 24758000 21616000 2205400 1794000 1351200 40005000 41438000 35686000 8887200 9863100 10700000 20179 1428 19550 374387;374388;374389;374390;374391;374392;374393;374394;374395;374396;374397;374398;374399;374400;374401;374402;374403;374404;374405;374406;374407;374408;374409;374410;374411;374412;374413;374414;374415;374416;374417;374418;374419;374420 228942;228943;228944;228945;228946;228947;228948;228949;228950;228951;228952;228953;228954;228955;228956;228957;228958;228959;228960;228961;228962 228947 19 TLVWCDNEWGFANR Unmodified 1766.7835 0.78348864 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 48.331 47.055 2 1.2622E-08 21928 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 154.24 140.34 116320000 14541000 0 0 0 0 0 0 14806000 0 0 0 0 13103000 12089000 10687000 0 0 0 18316000 16625000 16153000 0 0 0 20180 505 19551 374421;374422;374423;374424;374425;374426;374427;374428 228963;228964;228965;228966;228967;228968;228969;228970 228970 7 TLVYCSEGSPEGFNPQLFTSGTTYDASSVPLYNR Unmodified 3756.7254 0.72537123 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 53.328 51.883 3;4 1.322E-44 25319 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 223.56 223.11 580310000 196510000 180190000 172450000 0 0 0 4090200 4627300 0 0 0 0 0 0 0 0 0 0 8908600 6512900 7027800 0 0 0 20181 1219 19552 374429;374430;374431;374432;374433;374434;374435;374436;374437;374438;374439 228971;228972;228973;228974 228973 4 TLWINGDWITGQGASR Unmodified 1773.8798 0.87983187 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS 1 1 49.605 48.276 2 1.8494E-08 23632 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 149.26 143.41 38538000 22983000 15554000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20182 1835 19553 374440;374441 228975;228976 228976 2 TLWVPALK Unmodified 926.55894 0.55893865 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 39.731 38.291 2 0.036078 18652 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 62.717 62.717 804420000 288210000 261650000 254550000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20183 1610 19554 374442;374443;374444 228977;228978;228979;228980;228981;228982 228977 6 TLWVSDDAEEQR Unmodified 1447.6579 0.657937 1103 P15047 entA 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase yes yes 0 0 0 By MS/MS 1 28.495 27.141 2 0.00020277 12568 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 96.015 93.861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20184 1103 19555 374445 228983 228983 1 TLYPDAETIK Unmodified 1149.5918 0.59175492 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 25.183 24.22 2 0.00062696 10676 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 90.761 23.592 875080000 85016000 92003000 73459000 0 0 0 0 80749000 0 0 0 0 97955000 110160000 87187000 0 0 0 86778000 75154000 86622000 0 0 0 20185 951 19556 374446;374447;374448;374449;374450;374451;374452;374453;374454;374455;374456 228984;228985;228986;228987;228988;228989;228990;228991 228989 8 TLYVSVK Unmodified 808.46945 0.46945494 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 19.905 20.132 1;2 0.012989 8120 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.01 91.445 1516000000 64355000 58031000 54731000 3554900 3369500 2434700 95329000 89116000 89819000 8957300 11395000 9075300 113790000 89121000 129310000 10960000 10347000 10599000 200390000 188040000 192200000 27604000 26752000 26689000 20186 1819 19557 374457;374458;374459;374460;374461;374462;374463;374464;374465;374466;374467;374468;374469;374470;374471;374472;374473;374474;374475;374476;374477;374478;374479;374480;374481;374482;374483;374484;374485;374486;374487;374488;374489;374490;374491;374492;374493;374494;374495;374496;374497;374498;374499;374500;374501 228992;228993;228994;228995;228996;228997;228998;228999;229000;229001;229002;229003;229004;229005;229006;229007;229008;229009;229010;229011;229012 228995 17 TLYYQNTR Unmodified 1057.5193 0.51925868 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.25 15.929 2 0.00085144 5406 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 120.46 109.99 872060000 44764000 40405000 43139000 859900 1088000 852820 89156000 76555000 67637000 0 1014200 1069600 64039000 55814000 64000000 0 0 0 113420000 104390000 100350000 1151000 1035200 1313200 20187 29 19558 374502;374503;374504;374505;374506;374507;374508;374509;374510;374511;374512;374513;374514;374515;374516;374517;374518;374519;374520;374521 229013;229014;229015;229016;229017;229018;229019;229020;229021;229022;229023 229014 11 TMACGIAGLSVAADSLSAIK Unmodified 1934.9805 0.98053347 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 3 4 2 2 2 3 5 4 1 1 1 5 4 5 1 1 1 5 3 4 1 1 1 51.912 50.64 2;3 5.1493E-30 24563 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 216.27 216.27 11898000000 575440000 572690000 542450000 8656500 8878700 7769700 1055900000 973370000 1398100000 7421700 6540400 8014000 1213800000 1600600000 1073400000 4374800 3488500 5352300 988390000 940330000 888920000 4624800 5450800 3948900 20188 212 19559 374522;374523;374524;374525;374526;374527;374528;374529;374530;374531;374532;374533;374534;374535;374536;374537;374538;374539;374540;374541;374542;374543;374544;374545;374546;374547;374548;374549;374550;374551;374552;374553;374554;374555;374556;374557;374558;374559;374560;374561;374562;374563;374564;374565;374566;374567;374568;374569;374570;374571;374572;374573;374574;374575;374576;374577;374578;374579;374580;374581;374582;374583;374584 229024;229025;229026;229027;229028;229029;229030;229031;229032;229033;229034;229035;229036;229037;229038;229039;229040;229041;229042;229043;229044;229045;229046;229047;229048;229049;229050;229051;229052;229053;229054;229055;229056;229057;229058;229059;229060;229061;229062;229063;229064;229065;229066;229067;229068;229069;229070;229071;229072;229073;229074;229075;229076;229077;229078;229079;229080;229081;229082;229083;229084;229085;229086 229029 61 TMACGIAGLSVAADSLSAIK Oxidation (M) 1950.9754 0.97544809 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 2 2 2 2 1 1 48.391 47.052 2 6.3738E-30 23499 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 216.54 207.03 278010000 7907100 5649700 6371900 0 0 0 41253000 54713000 29240000 0 0 0 32717000 27911000 27620000 0 0 0 19766000 13865000 10997000 0 0 0 20189 212 19559 374585;374586;374587;374588;374589;374590;374591;374592;374593;374594;374595;374596;374597;374598;374599;374600;374601 229087;229088;229089;229090;229091;229092;229093;229094;229095;229096;229097;229098;229099;229100;229101;229102;229103 229088 78 15 TMAPLTR Unmodified 788.42146 0.42145889 1790 P75915 ycdY Chaperone protein YcdY yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 14.785 15.643 2 0.0021192 4960 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 117.93 107.63 347810000 57016000 51915000 46642000 0 1416000 1507900 0 0 0 0 0 0 0 25214000 18503000 0 0 0 43671000 56773000 45148000 0 0 0 20190 1790 19560 374602;374603;374604;374605;374606;374607;374608;374609;374610;374611 229104;229105;229106;229107;229108;229109 229108 5 TMAQLFR Unmodified 865.44801 0.44800799 1522 P39310 ytfB Uncharacterized protein YtfB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.563 26.416 2 0.0018969 12442 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 121.87 63.212 105160000 8657100 7995500 10016000 0 0 0 9917100 11501000 13118000 0 0 0 7601600 6586000 5152700 0 0 0 8091100 9340500 7180500 0 0 0 20191 1522 19561 374612;374613;374614;374615;374616;374617;374618;374619;374620;374621;374622;374623 229110;229111;229112;229113;229114;229115;229116;229117 229111 8 TMAVVAPLVLHLPAEEIASK Unmodified 2088.1653 0.16529777 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.918 48.498 3 2.1007E-05 23934 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 85.231 84.47 689420000 34905000 28569000 23368000 3820500 3078800 2809100 59694000 53695000 60565000 14987000 14281000 14612000 59524000 60649000 57560000 0 0 0 60932000 60663000 57774000 6181300 6093800 5658900 20192 1742 19562 374624;374625;374626;374627;374628;374629;374630;374631;374632;374633;374634;374635;374636;374637;374638;374639;374640;374641;374642;374643;374644 229118;229119;229120;229121;229122;229123;229124;229125;229126;229127;229128;229129;229130;229131;229132;229133;229134 229123 17 TMCDVWVPVVESLR Unmodified 1689.8218 0.82184798 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 53.71 52.27 2;3 7.243E-12 25441 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 217.14 214.25 2069400000 73127000 70961000 73196000 0 0 0 214580000 221610000 215900000 0 0 0 249340000 252310000 233050000 0 0 0 126610000 166250000 172500000 0 0 0 20193 1805 19563 374645;374646;374647;374648;374649;374650;374651;374652;374653;374654;374655;374656;374657;374658;374659;374660;374661;374662;374663;374664;374665;374666;374667;374668 229135;229136;229137;229138;229139;229140;229141;229142;229143;229144;229145;229146;229147;229148;229149;229150;229151;229152 229144 16 TMDDIADSTQR Unmodified 1251.5401 0.54013005 1593 P50466 aer Aerotaxis receptor yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 17.251 18.038 2 0.010305 4886 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 63.283 62.455 6323400 0 0 0 2243900 2107200 1972300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20194 1593 19564 374669;374670;374671 229153 229153 1 TMDIGGDK Unmodified 835.37457 0.37456828 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 13.107 13.973 1;2 0.0023103 4264 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.53 114.71 1071700000 58358000 54479000 59365000 0 0 0 85602000 86539000 82269000 0 0 0 131260000 114380000 105620000 0 0 0 91417000 99933000 102460000 0 0 0 20195 192 19565 374672;374673;374674;374675;374676;374677;374678;374679;374680;374681;374682;374683;374684;374685;374686;374687;374688;374689;374690;374691;374692;374693;374694;374695 229154;229155;229156;229157 229154 0 TMDIGGDKELPYMNFPK Unmodified 1954.9169 0.91687058 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 41.492 39.702 2;3 9.7666E-31 19788 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 266.35 256.84 5368800000 357020000 320210000 265370000 2904100 4373300 3721000 400060000 414790000 420060000 8642900 10082000 6820100 503630000 490280000 475270000 0 0 0 515410000 602150000 553430000 4350700 5351400 4861100 20196 192 19566 374696;374697;374698;374699;374700;374701;374702;374703;374704;374705;374706;374707;374708;374709;374710;374711;374712;374713;374714;374715;374716;374717;374718;374719;374720;374721;374722;374723;374724;374725;374726;374727;374728;374729 229158;229159;229160;229161;229162;229163;229164;229165;229166;229167;229168;229169;229170;229171;229172;229173;229174;229175;229176;229177;229178;229179;229180;229181;229182;229183;229184;229185;229186;229187;229188;229189 229162 32 TMEDIVAQVK Unmodified 1132.5798 0.57981002 1593 P50466 aer Aerotaxis receptor yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 30.772 29.607 2 0.067553 10019 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 59.245 55.499 10463000 0 0 0 2330000 2073300 2743000 0 0 0 0 0 0 0 0 0 3316300 0 0 0 0 0 0 0 0 20197 1593 19567 374730;374731;374732;374733 229190;229191 229191 0 TMEGFGIHTFR Unmodified 1294.6128 0.61284149 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 28.956 27.678 2;3 1.6057E-07 12676 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.83 166.15 858540000 148180000 134220000 113940000 627590 721970 800120 100650000 97524000 93358000 0 0 0 17658000 19019000 17820000 0 0 0 39156000 39461000 35419000 0 0 0 20198 1174 19568 374734;374735;374736;374737;374738;374739;374740;374741;374742;374743;374744;374745;374746;374747;374748;374749;374750;374751;374752;374753;374754;374755;374756;374757;374758;374759;374760 229192;229193;229194;229195;229196;229197;229198;229199;229200;229201;229202;229203;229204;229205;229206 229201 15 TMFIGGLQGAK Unmodified 1121.5903 0.59031513 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.545 31.007 2 0.0027752 15100 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 67.993 62.334 150710000 6192800 0 0 0 0 0 12934000 14211000 13633000 8921500 10927000 9082100 17883000 0 14175000 1096100 0 0 0 23702000 17958000 0 0 0 20199 1781 19569 374761;374762;374763;374764;374765;374766;374767;374768;374769;374770;374771;374772 229207;229208;229209;229210 229208 4 TMGAISTSSK Unmodified 981.4801 0.48009598 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 12.311 13.243 2 0.00054439 2882 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 96.143 84.921 43841000 8300700 0 5156300 10698000 9731500 9955100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20200 114 19570 374773;374774;374775;374776;374777 229211;229212;229213 229212 3 TMGFSDLR Unmodified 925.43275 0.43275186 1454 P37005 lasT Uncharacterized tRNA/rRNA methyltransferase LasT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.197 26.031 2 0.0028449 11809 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 97.093 69.777 79442000 9693800 7311700 7708700 0 0 0 6437400 6126700 6640000 0 0 0 6961600 0 6495200 0 0 0 6539400 7365600 8161700 0 0 0 20201 1454 19571 374778;374779;374780;374781;374782;374783;374784;374785;374786;374787;374788 229214;229215;229216 229216 3 TMGKPPVDDDIPAEEQVR Unmodified 1995.9572 0.95715549 1394 P32662 gph Phosphoglycolate phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 24.273 23.365 2;3 5.1866E-06 10258 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 115.8 110.31 708470000 60003000 60246000 57464000 0 0 0 44581000 51373000 53469000 0 0 0 58014000 51324000 65733000 0 0 0 64747000 77726000 63786000 0 0 0 20202 1394 19572 374789;374790;374791;374792;374793;374794;374795;374796;374797;374798;374799;374800;374801;374802;374803;374804;374805;374806;374807;374808;374809;374810;374811 229217;229218;229219;229220;229221;229222;229223;229224;229225;229226;229227;229228;229229;229230 229221 14 TMHDGASVSLR Unmodified 1172.5608 0.56080592 1361 P31130 ydeI Uncharacterized protein YdeI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 2 1 2 1 1 2 2 12.886 13.668 2;3 3.1579E-07 4188 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.66 146.8 669140000 156360000 148190000 152790000 0 0 0 59087000 56965000 46904000 0 0 0 7822000 7347400 5560300 851390 0 0 0 12508000 14752000 0 0 0 20203 1361 19573 374812;374813;374814;374815;374816;374817;374818;374819;374820;374821;374822;374823;374824;374825;374826;374827;374828;374829;374830;374831;374832 229231;229232;229233;229234;229235;229236 229233 5 TMHEIADSSK Unmodified 1117.5074 0.50737336 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 10.6 11.62 2;3 6.9472E-06 2110 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 155.42 146.89 68283000 0 26125000 0 16508000 18424000 7224900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20204 151 19574 374833;374834;374835;374836;374837;374838 229237;229238;229239;229240;229241 229241 5 TMHEIADSSKK Unmodified 1245.6023 0.60233638 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 3 5.0458 6.1212 2;3 9.4569E-05 1001 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 84.821 79.48 36192000 0 0 0 12311000 11645000 12235000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20205 151 19575 374839;374840;374841;374842;374843;374844;374845 229242;229243;229244;229245;229246;229247 229247 6 TMIYVTHDQVEAMTLADK Unmodified 2064.986 0.98601278 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 1 2 2 2 36.464 34.741 2;3 2.9877E-29 13633 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 217.48 204.71 517200000 0 0 0 0 1608600 0 32281000 26837000 36643000 42377000 36470000 40809000 29950000 24991000 27728000 8540300 5114100 7223300 40267000 38439000 33670000 30775000 22715000 30764000 20206 1718 19576 374846;374847;374848;374849;374850;374851;374852;374853;374854;374855;374856;374857;374858;374859;374860;374861;374862;374863;374864;374865;374866;374867;374868;374869;374870;374871;374872;374873;374874;374875;374876;374877;374878 229248;229249;229250;229251;229252;229253;229254;229255;229256;229257;229258;229259;229260;229261;229262;229263;229264;229265;229266;229267;229268 229253 21 TMIYVTHDQVEAMTLADKIVVLDAGR Unmodified 2888.4776 0.47760014 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 50.991 49.507 4 6.5351E-05 20045 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 73.322 66.673 23488000 0 0 0 0 0 0 0 0 0 8057200 7191000 0 0 0 0 0 0 0 0 0 0 0 0 8239500 20207 1718 19577 374879;374880;374881 229269 229269 1 TMLDTMNHGGR Unmodified 1231.5438 0.54377564 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 15.308 16.053 2;3 1.5214E-10 5082 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 195.17 194.67 2459500000 278220000 262400000 241120000 164500 964310 760480 167330000 192210000 163830000 0 447810 480730 192350000 179910000 177960000 0 0 0 208870000 189440000 201810000 0 538240 706610 20208 172 19578 374882;374883;374884;374885;374886;374887;374888;374889;374890;374891;374892;374893;374894;374895;374896;374897;374898;374899;374900;374901;374902;374903;374904;374905;374906;374907;374908;374909;374910;374911;374912 229270;229271;229272;229273;229274;229275;229276;229277;229278;229279;229280;229281;229282;229283;229284;229285;229286;229287;229288;229289 229286 20 TMLFDAPLQMK Unmodified 1293.6461 0.64611545 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.044 43.587 2 0.00010796 21312 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.33 117.22 313920000 37270000 37361000 38114000 0 0 0 37267000 34244000 32816000 0 0 0 14600000 13330000 16876000 0 0 0 16794000 18063000 17180000 0 0 0 20209 1282 19579 374913;374914;374915;374916;374917;374918;374919;374920;374921;374922;374923;374924 229290;229291;229292;229293;229294;229295;229296;229297;229298;229299;229300;229301 229296 12 TMLFNIHTLDWDDK Oxidation (M) 1763.8189 0.8188711 239 P0A6F3 glpK Glycerol kinase yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 1 1 2 3 2 45.901 44.404 3 9.4748E-05 21285 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 83.499 79.398 256830000 0 5636100 7449900 0 0 0 36123000 34293000 29472000 0 0 0 26838000 15731000 13785000 0 0 0 25486000 36947000 25072000 0 0 0 20210 239 19580 374925;374926;374927;374928;374929;374930;374931;374932;374933;374934;374935;374936;374937;374938;374939;374940;374941;374942;374943 229302;229303;229304;229305;229306;229307;229308;229309;229310;229311;229312;229313;229314 229304 93 13 TMLFNIHTLDWDDK Unmodified 1747.824 0.82395647 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 48.108 46.661 2;3 3.0077E-45 23043 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 317.12 300.87 7526400000 162270000 156300000 141810000 0 0 0 896220000 957090000 906890000 4638200 3978800 4867700 746070000 702920000 646130000 0 0 0 707710000 730380000 755920000 0 0 3258600 20211 239 19580 374944;374945;374946;374947;374948;374949;374950;374951;374952;374953;374954;374955;374956;374957;374958;374959;374960;374961;374962;374963;374964;374965;374966;374967;374968;374969;374970;374971 229315;229316;229317;229318;229319;229320;229321;229322;229323;229324;229325;229326;229327;229328;229329;229330;229331;229332;229333;229334;229335;229336;229337;229338;229339;229340;229341;229342 229320 28 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR Unmodified 4369.1579 0.15786927 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.269 53.834 4 2.0062E-86 21945 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 278.96 271.22 365530000 48669000 56116000 53925000 12252000 9821300 10716000 0 17423000 0 54213000 0 46527000 0 12062000 0 0 0 0 0 28342000 15466000 0 0 0 20212 982 19581 374972;374973;374974;374975;374976;374977;374978;374979;374980;374981;374982;374983 229343;229344;229345;229346 229343 4 TMLQQQGSR Unmodified 1047.5131 0.51312744 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.855 12.687 2 0.097989 3494 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 49.423 40.51 141780000 11195000 7329300 5799600 0 0 0 11940000 13761000 13254000 0 0 0 13865000 11068000 11659000 0 0 0 14107000 13954000 13847000 0 0 0 20213 1575 19582 374984;374985;374986;374987;374988;374989;374990;374991;374992;374993;374994;374995 229347 229347 0 TMLYAINGGVDEK Unmodified 1409.6861 0.68606601 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 32.201 30.309 2 4.0426E-08 14351 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 149.96 145.66 1091500000 0 0 0 5153100 4187500 4722400 527640000 505030000 0 8780700 9457600 8863700 0 0 0 0 0 0 0 0 0 5972400 5278800 6392000 20214 212 19583 374996;374997;374998;374999;375000;375001;375002;375003;375004;375005;375006;375007;375008;375009;375010;375011;375012;375013;375014 229348;229349;229350;229351;229352;229353;229354;229355;229356;229357;229358;229359;229360;229361;229362;229363;229364 229358 17 TMLYAINGGVDEK Oxidation (M) 1425.681 0.68098063 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 26.825 25.624 2 7.4711E-07 11807 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 144.55 144.55 99356000 0 0 4499400 1013200 0 0 16899000 17367000 14982000 0 0 0 8554100 6390900 8893300 0 0 0 7290700 6768300 6697600 0 0 0 20215 212 19583 375015;375016;375017;375018;375019;375020;375021;375022;375023;375024;375025 229365;229366;229367;229368;229369;229370;229371;229372;229373 229367 79 9 TMMMAQR Unmodified 867.3765 0.37649931 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 14.875 15.014 2 0.0009293 4439 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 118.06 118.06 19057000 0 0 0 0 0 0 0 0 0 2536900 2635700 2507500 0 0 0 0 0 0 0 0 0 3689800 3772800 3914000 20216 124 19584 375026;375027;375028;375029;375030;375031;375032;375033;375034;375035 229374;229375;229376;229377;229378;229379;229380 229378 7 TMNITSK Oxidation (M) 809.3953 0.39530372 768 P0AD49 raiA Ribosome-associated inhibitor A yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 3 3 3 2 3 2 2 8.4851 9.2972 2 0.016118 1468 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.568 18.765 171380000 0 2047500 6709300 0 0 0 25558000 54898000 55212000 0 0 0 0 4272000 0 0 0 0 10292000 6188400 6203100 0 0 0 20217 768 19585 375036;375037;375038;375039;375040;375041;375042;375043;375044;375045;375046;375047;375048;375049;375050;375051;375052;375053;375054;375055;375056 229381;229382;229383;229384;229385;229386;229387;229388;229389;229390 229381 381 10 TMNITSK Unmodified 793.40039 0.4003891 768 P0AD49 raiA Ribosome-associated inhibitor A yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.008 12.839 2 0.00225 3415 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 123.69 32.704 4512200000 266000000 0 0 6934500 0 0 900540000 895070000 843640000 0 0 0 470300000 0 0 0 0 0 367440000 374290000 387950000 0 0 0 20218 768 19585 375057;375058;375059;375060;375061;375062;375063;375064;375065 229391;229392 229392 1 TMNLGTVSEER Unmodified 1235.5816 0.58160094 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.639 21.656 2 8.3686E-06 8363 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 148.91 129.94 1736300000 317000000 318050000 281430000 2149500 2389200 2973300 121280000 103850000 102950000 2375700 1874000 0 97648000 85593000 78970000 0 0 0 67351000 78288000 71409000 0 681080 0 20219 546 19586 375066;375067;375068;375069;375070;375071;375072;375073;375074;375075;375076;375077;375078;375079;375080;375081;375082;375083 229393;229394;229395;229396;229397;229398;229399;229400;229401;229402;229403;229404;229405 229405 13 TMNTPHGDAITVFDLR Unmodified 1786.8672 0.86721827 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 37.047 35.415 2;3 9.009E-40 17094 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 267.46 251.92 6514200000 871020000 817240000 762530000 9887600 9545000 7523400 615550000 606710000 618580000 8580000 8308900 6900000 287250000 307960000 320700000 3650100 2498500 2184600 431580000 405260000 402630000 4381300 0 3755700 20220 1577 19587 375084;375085;375086;375087;375088;375089;375090;375091;375092;375093;375094;375095;375096;375097;375098;375099;375100;375101;375102;375103;375104;375105;375106;375107;375108;375109;375110;375111;375112;375113;375114;375115;375116;375117;375118;375119;375120;375121 229406;229407;229408;229409;229410;229411;229412;229413;229414;229415;229416;229417;229418;229419;229420;229421;229422;229423;229424;229425;229426;229427;229428;229429;229430;229431;229432;229433 229416 28 TMNTPHGDAITVFDLR Oxidation (M) 1802.8621 0.8621329 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 1 2 1 2 2 2 2 2 1 34.111 32.753 3 0.004622 15861 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 55.437 53.292 246250000 38329000 31150000 33935000 0 0 0 39964000 0 0 0 0 0 14155000 14895000 18299000 0 0 0 25854000 21541000 8126700 0 0 0 20221 1577 19587 375122;375123;375124;375125;375126;375127;375128;375129;375130;375131;375132;375133;375134;375135;375136;375137;375138 229434;229435;229436;229437;229438 229437 559 4 TMVDDLK Unmodified 820.40005 0.40005474 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.789 19.186 2 0.0066942 7538 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.407 67.091 1634400000 123320000 117740000 94184000 0 0 0 176280000 153060000 152620000 2026600 1721600 2313000 111910000 111790000 114360000 0 0 0 170710000 162540000 139810000 0 0 0 20222 59 19588 375139;375140;375141;375142;375143;375144;375145;375146;375147;375148;375149;375150;375151;375152;375153 229439;229440;229441;229442;229443;229444;229445;229446;229447;229448 229439 10 TMVEAMQGK Unmodified 993.46234 0.46233743 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 15.506 16.39 2 0.0055365 5645 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 74.127 65.264 103590000 0 0 0 0 0 0 0 8306100 0 0 0 0 22934000 17695000 0 0 0 0 0 28059000 26597000 0 0 0 20223 1421 19589 375154;375155;375156;375157;375158 229449 229449 1 TMVHWWSQK Unmodified 1201.5702 0.57024839 178 P08194 glpT Glycerol-3-phosphate transporter yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 25.299 24.059 2;3 0.013786 10144 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 59.931 58.287 210020000 5023400 4445700 4042600 0 0 0 19807000 22527000 25695000 7413600 7120000 5224200 19697000 18377000 15212000 0 0 0 19702000 19309000 11786000 0 0 4643700 20224 178 19590 375159;375160;375161;375162;375163;375164;375165;375166;375167;375168;375169;375170;375171;375172;375173;375174;375175;375176;375177 229450;229451;229452;229453;229454;229455;229456;229457;229458 229456 9 TMYATLEEAIDAAR Unmodified 1553.7396 0.73955814 1269 P25738 msyB Acidic protein MsyB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 49.371 47.959 2;3 1.671E-19 23656 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 208.46 182.9 2788600000 524090000 521620000 487880000 0 0 0 282390000 268620000 258520000 15697000 13781000 13063000 54526000 50448000 51028000 0 0 0 67919000 67850000 69746000 13960000 13357000 14091000 20225 1269 19591 375178;375179;375180;375181;375182;375183;375184;375185;375186;375187;375188;375189;375190;375191;375192;375193;375194;375195;375196;375197;375198;375199;375200;375201;375202;375203;375204;375205;375206;375207;375208;375209;375210;375211;375212;375213 229459;229460;229461;229462;229463;229464;229465;229466;229467;229468;229469;229470;229471;229472;229473;229474;229475;229476;229477;229478;229479;229480;229481;229482;229483;229484 229464 26 TMYATLEEAIDAAR Oxidation (M) 1569.7345 0.73447277 1269 P25738 msyB Acidic protein MsyB yes yes 0 1 0 By MS/MS By matching 1 1 41.205 39.426 2 0.0003877 19152 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 75.416 69.922 10362000 0 5910100 0 0 0 0 0 4452300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20226 1269 19591 375214;375215 229485 229485 524 0 TMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQK Unmodified 4197.9437 0.94369686 1269 P25738 msyB Acidic protein MsyB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 1 1 2 2 2 2 55.361 53.899 3;4 4.0104E-29 21667 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 162.28 160.3 766930000 139070000 172330000 124800000 0 0 0 33821000 37634000 41050000 9264200 0 0 9390700 7343500 5158000 0 0 0 16207000 21543000 0 49097000 54803000 45412000 20227 1269 19592 375216;375217;375218;375219;375220;375221;375222;375223;375224;375225;375226;375227;375228;375229;375230;375231;375232;375233;375234;375235;375236;375237;375238 229486;229487;229488;229489;229490;229491;229492;229493 229487 8 TNAALDTANTISSVK Unmodified 1504.7733 0.77330111 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 1 26.24 25.096 2;3 7.8552E-16 11351 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 256.93 250.7 1179900000 65525000 59837000 59306000 1401100 1691200 2175400 103920000 105500000 102200000 7630700 6035700 6044600 94374000 84844000 80741000 1457600 2154000 1472200 148290000 124120000 112380000 2096200 4382100 2313400 20228 294 19593 375239;375240;375241;375242;375243;375244;375245;375246;375247;375248;375249;375250;375251;375252;375253;375254;375255;375256;375257;375258;375259;375260;375261;375262;375263;375264;375265;375266;375267;375268;375269;375270;375271;375272;375273;375274;375275;375276;375277;375278;375279;375280;375281;375282 229494;229495;229496;229497;229498;229499;229500;229501;229502;229503;229504;229505;229506;229507;229508;229509;229510 229503 17 TNAALDTANTISSVKR Unmodified 1660.8744 0.87441214 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.211 21.097 3 4.8085E-05 6689 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 69.485 65.517 41449000 0 0 0 2889900 2841000 2754400 0 0 0 3029600 5704700 5965600 0 0 0 2949300 2676300 2379200 0 0 0 4093700 2875500 3289900 20229 294 19594 375283;375284;375285;375286;375287;375288;375289;375290;375291;375292;375293;375294 229511;229512;229513;229514;229515;229516 229512 6 TNAATVAVIQDALK Unmodified 1413.7827 0.78274359 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 1 1 2 2 2 2 39.054 37.378 2;3 4.317E-06 18655 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 137.55 125.34 783030000 91659000 74353000 83569000 515910 465320 452920 63114000 65277000 68477000 0 0 0 49526000 39579000 42010000 0 0 0 70636000 62946000 70447000 0 0 0 20230 148 19595 375295;375296;375297;375298;375299;375300;375301;375302;375303;375304;375305;375306;375307;375308;375309;375310;375311;375312;375313;375314;375315;375316;375317;375318 229517;229518;229519;229520;229521;229522;229523;229524;229525;229526;229527;229528;229529;229530;229531;229532;229533;229534;229535 229517 19 TNADLEK Unmodified 789.38685 0.38684752 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.573 11.301 2 0.020089 2686 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 77.058 50.262 1092200000 79280000 88016000 82716000 0 0 0 93497000 90003000 97772000 0 0 0 145300000 138880000 89377000 0 756720 0 97388000 0 89223000 0 0 0 20231 273 19596 375319;375320;375321;375322;375323;375324;375325;375326;375327;375328;375329;375330 229536;229537;229538;229539 229538 2 TNAENEFVTIK Unmodified 1264.6299 0.62993134 11 CON__P04264 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.314 25.22 2 8.982E-05 8868 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 121.8 108.22 582880000 0 0 0 11986000 10850000 11802000 0 0 0 105230000 111380000 125730000 0 1914700 0 8789800 4638000 5699700 0 0 0 59596000 62009000 63262000 + 20232 11 19597 375331;375332;375333;375334;375335;375336;375337;375338;375339;375340;375341;375342;375343 229540;229541;229542;229543;229544;229545;229546;229547;229548 229547 9 TNAENEFVTIKK Unmodified 1392.7249 0.72489436 11 CON__P04264 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 1 2 2 2 18.115 18.383 2;3 3.9345E-06 5044 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 131.13 131.13 969690000 0 0 0 44304000 35164000 40602000 0 0 0 90352000 115270000 86155000 0 0 0 17676000 17750000 19093000 0 0 0 189480000 157880000 155970000 + 20233 11 19598 375344;375345;375346;375347;375348;375349;375350;375351;375352;375353;375354;375355;375356;375357;375358;375359;375360;375361;375362 229549;229550;229551;229552;229553;229554;229555;229556;229557;229558;229559;229560;229561;229562;229563;229564;229565;229566;229567 229552 19 TNAQPISVIQIDDPNNPGEK Unmodified 2149.0651 0.065126037 1680 P64506 yebY Uncharacterized protein YebY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 36.7 35.052 2;3 1.2408E-56 17297 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 290.23 275.33 594060000 46861000 46804000 42091000 0 0 0 44122000 37271000 36881000 0 0 0 54501000 49329000 50363000 0 0 0 62101000 62064000 61669000 0 0 0 20234 1680 19599 375363;375364;375365;375366;375367;375368;375369;375370;375371;375372;375373;375374;375375;375376;375377;375378;375379;375380;375381;375382;375383;375384;375385;375386 229568;229569;229570;229571;229572;229573;229574;229575;229576;229577;229578;229579;229580;229581;229582;229583;229584;229585;229586 229568 19 TNDDFFEMMK Unmodified 1276.5104 0.51040983 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.679 42.16 2 3.946E-05 20374 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 140.75 135.27 627350000 85881000 87415000 74263000 5067700 4809600 4914300 32512000 35207000 36038000 34576000 38038000 38882000 17873000 20596000 19413000 3098100 0 2069700 29314000 30293000 27085000 0 0 0 20235 982 19600 375387;375388;375389;375390;375391;375392;375393;375394;375395;375396;375397;375398;375399;375400;375401;375402;375403;375404;375405;375406 229587;229588;229589;229590;229591;229592;229593;229594;229595;229596;229597;229598;229599;229600 229594 14 TNDDFFEMMKR Unmodified 1432.6115 0.61152086 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 36.234 34.133 3 0.0010339 13713 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.652 69.785 14899000 0 0 0 963050 1564000 1336100 0 0 0 5513300 3074900 2448200 0 0 0 0 0 0 0 0 0 0 0 0 20236 982 19601 375407;375408;375409;375410;375411;375412 229601;229602;229603 229601 3 TNDTLAVTGEAFSR Unmodified 1480.7158 0.71578623 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 1 2 1 31.532 30.162 2;3 2.1504E-26 14216 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 232.19 195.86 1912400000 222090000 220700000 228870000 0 0 0 183430000 163700000 189180000 0 0 0 115360000 109280000 106190000 0 0 0 120620000 122390000 129520000 0 0 1056600 20237 874 19602 375413;375414;375415;375416;375417;375418;375419;375420;375421;375422;375423;375424;375425;375426;375427;375428;375429;375430;375431;375432;375433;375434;375435 229604;229605;229606;229607;229608;229609;229610;229611;229612;229613;229614;229615;229616;229617 229610 12 TNDWLDFDQLAEEK Unmodified 1722.7737 0.77369504 453 P0A8Q6 clpS ATP-dependent Clp protease adapter protein ClpS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.183 49.932 2 4.7183E-09 24136 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 156.36 142.13 73760000 4678900 7645000 6173100 0 0 0 4610000 5360100 4307600 0 0 0 5379200 4531000 4326800 0 0 0 9108000 9812400 7827600 0 0 0 20238 453 19603 375436;375437;375438;375439;375440;375441;375442;375443;375444;375445;375446;375447 229618;229619 229619 2 TNELKADEER Unmodified 1203.5731 0.57314474 396 P0A850 tig Trigger factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 10.871 11.476 2;3 7.3364E-05 2777 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 139.39 127.55 2489200000 199860000 208640000 169340000 21137000 27245000 21357000 162870000 147830000 164050000 29690000 27539000 22647000 162820000 153250000 133690000 21268000 19050000 23484000 232920000 241710000 236950000 17084000 21369000 23372000 20239 396 19604 375448;375449;375450;375451;375452;375453;375454;375455;375456;375457;375458;375459;375460;375461;375462;375463;375464;375465;375466;375467;375468;375469;375470;375471;375472;375473;375474;375475;375476;375477;375478;375479;375480;375481;375482;375483;375484;375485;375486;375487;375488;375489;375490;375491;375492;375493;375494 229620;229621;229622;229623;229624;229625;229626;229627;229628;229629;229630;229631;229632;229633;229634;229635;229636;229637;229638;229639;229640;229641;229642;229643 229626 24 TNESFQHVTCR Unmodified 1377.6095 0.60954702 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.282 13.029 2 0.001696 3783 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.379 66.215 60724000 4830700 6103700 6642100 2722700 2682700 2694800 6849400 6708400 5726000 1891600 1575800 1712400 0 2583600 3056800 0 0 0 0 0 4943700 0 0 0 20240 1115 19605 375495;375496;375497;375498;375499;375500;375501;375502;375503;375504;375505;375506;375507;375508;375509;375510 229644;229645;229646 229646 3 TNFGFDTVPR Unmodified 1152.5564 0.55637247 275 P0A6S0 flgH Flagellar L-ring protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 32.518 31.189 2 2.5598E-07 14573 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 177.7 173.95 98928000 35533000 27812000 27026000 3471400 2685400 2401600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20241 275 19606 375511;375512;375513;375514;375515;375516 229647;229648;229649;229650;229651 229651 5 TNGPLNEQLHER Unmodified 1406.6902 0.69024019 1957 Q46845 yghU Disulfide-bond oxidoreductase YghU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1 1 1 1 1 1 13.953 14.816 2;3 0.00014434 4860 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.548 72.916 167250000 95399000 0 0 0 0 0 10416000 13191000 13544000 0 0 0 4639900 4730400 3905200 0 0 0 5533800 8394500 7494300 0 0 0 20242 1957 19607 375517;375518;375519;375520;375521;375522;375523;375524;375525;375526;375527;375528;375529 229652;229653;229654;229655;229656;229657 229653 3 TNIDPHGTAQALMQADLQQDLR Unmodified 2435.1863 0.18632058 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.403 39.729 3 6.5548E-06 19279 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 88.79 81.69 125960000 5913000 4660700 4467200 0 0 0 6108300 9758600 5874700 0 0 0 9623000 13580000 11466000 0 0 0 18690000 15437000 20381000 0 0 0 20243 1070 19608 375530;375531;375532;375533;375534;375535;375536;375537;375538;375539;375540;375541 229658;229659 229658 2 TNIIQAQTR Unmodified 1043.5724 0.57235688 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 14.692 15.671 2 0.00051909 4465 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 109.71 71.987 11737000 0 0 0 1379700 1623700 1342000 0 0 0 0 0 0 7391900 0 0 0 0 0 0 0 0 0 0 0 20244 1476 19609 375542;375543;375544;375545;375546;375547;375548 229660;229661;229662;229663 229660 3 TNIKDSSGKPLY Unmodified 1321.6878 0.68778057 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.192 14.834 2 0.060763 4759 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 59.265 52.596 75977000 0 0 0 0 0 0 10910000 11916000 0 0 1509200 0 8504100 8972400 8235900 0 0 0 9691300 12132000 0 1215100 1249300 1641700 20245 994 19610 375549;375550;375551;375552;375553;375554;375555;375556;375557;375558;375559 229664 229664 1 TNILAEFPVAWVDK Unmodified 1601.8453 0.84534384 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.616 53.168 2 6.9805E-08 26427 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.89 132.65 1808800000 189100000 172190000 179450000 0 0 0 131320000 123260000 126180000 0 0 0 151080000 131640000 149620000 0 0 0 149900000 147740000 157290000 0 0 0 20246 1132 19611 375560;375561;375562;375563;375564;375565;375566;375567;375568;375569;375570;375571 229665;229666;229667;229668;229669;229670;229671;229672;229673;229674;229675;229676 229665 12 TNIQDGSMLHVTHK Unmodified 1579.7777 0.77767498 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 2 1 1 3 3 3 1 1 3 3 3 3 3 3 15.163 15.947 2;3;4 1.4206E-06 5519 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 152.96 146.57 760980000 72111000 55212000 57559000 620300 337590 516100 94025000 76613000 77829000 576020 0 839110 42770000 42699000 48970000 0 0 0 72743000 55744000 61813000 0 0 0 20247 563 19612 375572;375573;375574;375575;375576;375577;375578;375579;375580;375581;375582;375583;375584;375585;375586;375587;375588;375589;375590;375591;375592;375593;375594;375595;375596;375597;375598;375599;375600;375601;375602;375603;375604;375605;375606;375607;375608;375609;375610;375611;375612;375613 229677;229678;229679;229680;229681;229682;229683;229684;229685;229686;229687;229688;229689;229690;229691;229692;229693;229694;229695;229696;229697;229698 229677 22 TNISTIFIR Unmodified 1063.6026 0.60259438 464 P0A8V6 fadR Fatty acid metabolism regulator protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.352 35.678 2 4.4823E-05 17797 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.35 111.93 182020000 15836000 16856000 14388000 0 0 0 15936000 13629000 12996000 0 0 0 12199000 12225000 11796000 0 0 0 18090000 15995000 22073000 0 0 0 20248 464 19613 375614;375615;375616;375617;375618;375619;375620;375621;375622;375623;375624;375625 229699;229700;229701;229702;229703;229704;229705;229706;229707;229708;229709;229710 229699 12 TNITDLAEGVK Unmodified 1159.6085 0.60846762 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 31.297 29.692 2 0.00021541 10133 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 102.52 77.398 102650000 0 0 0 24834000 23762000 22840000 0 0 0 0 0 1220400 2467000 0 2352500 0 0 0 0 0 0 8592900 7144000 9436300 20249 1904 19614 375626;375627;375628;375629;375630;375631;375632;375633;375634 229711;229712;229713;229714;229715 229713 5 TNLAGLMDGYFHHEASIEGGQHLNVNVMNR Unmodified 3323.5564 0.5564126 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 4 4 2 2 2 4 4 5 2 1 2 5 4 5 4 4 6 1 1 44.623 43.032 3;4;5 3.9004E-95 20613 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 313.9 312.18 13212000000 710550000 563000000 477860000 8837600 7550100 7399700 1375700000 2172000000 1832200000 21555000 14129000 17498000 1097800000 1153800000 1091900000 0 0 0 1003800000 841260000 803770000 5463300 5764600 0 20250 212 19615 375635;375636;375637;375638;375639;375640;375641;375642;375643;375644;375645;375646;375647;375648;375649;375650;375651;375652;375653;375654;375655;375656;375657;375658;375659;375660;375661;375662;375663;375664;375665;375666;375667;375668;375669;375670;375671;375672;375673;375674;375675;375676;375677;375678;375679;375680;375681;375682;375683;375684;375685;375686;375687;375688;375689;375690;375691;375692;375693;375694;375695;375696;375697;375698;375699;375700;375701 229716;229717;229718;229719;229720;229721;229722;229723;229724;229725;229726;229727;229728;229729;229730;229731;229732;229733;229734;229735;229736;229737;229738;229739;229740;229741;229742;229743;229744;229745;229746;229747;229748;229749;229750;229751;229752;229753;229754;229755;229756;229757;229758;229759;229760;229761;229762;229763;229764;229765;229766;229767;229768;229769;229770;229771;229772;229773;229774;229775;229776 229730 61 TNLAGLMDGYFHHEASIEGGQHLNVNVMNR Oxidation (M) 3339.5513 0.55132722 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 2 2 1 1 2 1 2 2 2 2 41.024 39.277 4 1.4475E-06 19469 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85 81.755 182410000 0 7862100 0 0 0 1304100 29849000 27829000 20946000 0 0 2217800 17437000 10612000 15962000 0 0 0 18384000 15438000 14567000 0 0 0 20251 212 19615 375702;375703;375704;375705;375706;375707;375708;375709;375710;375711;375712;375713;375714;375715;375716;375717;375718;375719;375720 229777;229778;229779;229780 229778 80 4 TNLCVAVR Unmodified 931.49094 0.49093544 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.702 19.154 2 0.00025974 6786 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 149.4 124.77 1167300000 77543000 75193000 66848000 0 0 0 125120000 121670000 130430000 0 1240600 0 97563000 87473000 78897000 0 0 0 100830000 101400000 101330000 0 899020 872600 20252 1253 19616 375721;375722;375723;375724;375725;375726;375727;375728;375729;375730;375731;375732;375733;375734;375735 229781;229782;229783;229784;229785 229785 4 TNLFMKPIFSQAR Unmodified 1551.8232 0.82316861 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 1 2 2 2 2 2 2 1 1 36.01 34.366 2;3 2.0026E-05 16510 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 98.531 97.735 593120000 76013000 81483000 79533000 0 1030200 1203800 0 37786000 36469000 1765800 1667200 1504400 38317000 32634000 40292000 0 0 0 51826000 56867000 51778000 1211100 0 1734700 20253 1872 19617 375736;375737;375738;375739;375740;375741;375742;375743;375744;375745;375746;375747;375748;375749;375750;375751;375752;375753;375754;375755;375756;375757;375758;375759;375760;375761;375762 229786;229787;229788;229789;229790;229791;229792;229793;229794;229795;229796 229787 10 TNNDTTLQLSSVLNR Unmodified 1674.8537 0.8536767 1751 P69829 ptsN Nitrogen regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.222 36.549 2 1.8731E-45 17684 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 276.17 269.64 112180000 21875000 17020000 19866000 0 0 0 6840800 10781000 8410100 0 0 0 3550300 4119200 3258100 0 0 0 6477700 5561500 4419400 0 0 0 20254 1751 19618 375763;375764;375765;375766;375767;375768;375769;375770;375771;375772;375773;375774 229797;229798;229799;229800;229801;229802;229803 229800 7 TNNPPSAQIKPGEYGFPLK Unmodified 2057.0582 0.058190166 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 32.082 30.728 2;3 2.7492E-17 14314 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 221.85 221.85 704280000 220990000 216570000 228480000 0 0 0 8728800 13931000 11574000 0 0 0 0 0 0 0 0 0 4010100 0 0 0 0 0 20255 1486 19619 375775;375776;375777;375778;375779;375780;375781;375782;375783;375784 229804;229805;229806;229807;229808;229809 229809 6 TNNSIASSHILALNYDHWHYSVVAR Unmodified 2867.4103 0.41032394 484 P0A927 tsx Nucleoside-specific channel-forming protein tsx yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 2 2 1 2 1 2 2 1 2 1 1 36.453 34.588 4;5 1.4706E-06 13621 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 89.946 87.297 167050000 0 4707900 0 3321900 2391500 1944900 0 5083700 0 21612000 12199000 15926000 4069600 12692000 4831100 0 0 0 18433000 21768000 9666200 16238000 6483500 5681800 20256 484 19620 375785;375786;375787;375788;375789;375790;375791;375792;375793;375794;375795;375796;375797;375798;375799;375800;375801;375802;375803;375804;375805;375806;375807;375808;375809 229810;229811;229812;229813;229814;229815;229816;229817;229818 229815 9 TNPQFAGHPFGTTVTAETLR Unmodified 2144.0651 0.065066458 1014 P0AGF2 csdE Sulfur acceptor protein CsdE yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 31.7 30.463 3 0.00037728 14817 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.454 62.31 116060000 0 0 0 0 0 0 18841000 0 27707000 0 0 0 0 11419000 0 0 0 2499000 17620000 20632000 17345000 0 0 0 20257 1014 19621 375810;375811;375812;375813;375814;375815;375816 229819 229819 1 TNPQLGVATEK Unmodified 1156.6088 0.60880197 1350 P30860 artJ ABC transporter arginine-binding protein 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.573 16.38 2 0.0001113 5683 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.7 105.65 126340000 19916000 19664000 16626000 0 0 0 7585200 8838800 8005900 0 0 0 8256000 5556400 5057100 0 0 0 9717100 10078000 7034900 0 0 0 20258 1350 19622 375817;375818;375819;375820;375821;375822;375823;375824;375825;375826;375827;375828 229820;229821;229822 229820 3 TNQVLGQALLAK Unmodified 1254.7296 0.7295858 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.71 30.355 2;3 1.878E-05 14085 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.5 87.56 863180000 171660000 177690000 176970000 4189700 4009000 5054600 39911000 28736000 40610000 8843500 6707000 5906400 22045000 23832000 24626000 2150300 1315100 1504100 34943000 36241000 38574000 2576100 2480700 2605900 20259 405 19623 375829;375830;375831;375832;375833;375834;375835;375836;375837;375838;375839;375840;375841;375842;375843;375844;375845;375846;375847;375848;375849;375850;375851;375852;375853;375854;375855 229823;229824;229825;229826;229827;229828;229829;229830;229831;229832;229833;229834;229835 229834 12 TNREPVMNLSESEVQEQLDNLVK Unmodified 2671.3123 0.31230896 1331 P29217 yceH UPF0502 protein YceH yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 47.995 46.544 3 4.2626E-16 21693 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 114.21 111.29 422840000 59255000 0 0 0 0 0 43702000 34856000 42632000 0 0 0 52134000 47059000 44766000 0 0 0 42555000 55877000 0 0 0 0 20260 1331 19624 375856;375857;375858;375859;375860;375861;375862;375863;375864 229836;229837;229838;229839;229840;229841;229842;229843;229844 229844 2 TNSSSSVLVGPLFGSSAPAPVTVGNTAAPAVAAPAPAPVK Unmodified 3656.9414 0.94137608 83 P03841 malM Maltose operon periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.215 50.967 3;4 1.2562E-18 24806 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.88 130.83 972670000 50643000 43918000 42968000 0 0 0 61691000 60124000 68448000 0 0 0 78852000 83126000 86270000 0 0 0 128960000 135590000 132080000 0 0 0 20261 83 19625 375865;375866;375867;375868;375869;375870;375871;375872;375873;375874;375875;375876;375877;375878;375879;375880;375881;375882;375883;375884;375885;375886;375887;375888 229845;229846;229847;229848;229849;229850;229851;229852;229853;229854;229855;229856;229857 229850 13 TNTTDVATFK Unmodified 1096.5401 0.5400537 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.506 17.88 2 3.4652E-05 6619 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 142.92 134.16 3838800000 0 7763900 0 623510 0 0 643640000 658810000 639960000 1593500 1268400 1177100 380310000 372930000 351170000 1207100 857040 1091500 272170000 273120000 228450000 799850 859940 987720 20262 40 19626 375889;375890;375891;375892;375893;375894;375895;375896;375897;375898;375899;375900;375901;375902;375903;375904;375905;375906;375907;375908;375909 229858;229859;229860;229861;229862;229863;229864;229865;229866;229867 229861 10 TNTTWLGEEAAR Unmodified 1347.6419 0.64189301 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 26.224 25.202 2 8.1563E-07 10834 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 152.54 125.54 599670000 0 0 0 0 0 0 88748000 82114000 79087000 0 0 0 66596000 62945000 60681000 0 0 926760 56125000 52690000 49760000 0 0 0 20263 1467 19627 375910;375911;375912;375913;375914;375915;375916;375917;375918;375919 229868;229869;229870;229871;229872;229873;229874;229875;229876 229875 9 TNVAFSDFTPTEYSTK Unmodified 1806.8312 0.83120992 1897 P77318 ydeN Uncharacterized sulfatase YdeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 38.651 37.048 2 1.0006E-13 18054 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 171.95 171.66 114030000 38333000 34057000 34933000 0 0 0 3192900 0 0 0 0 0 0 0 3516500 0 0 0 0 0 0 0 0 0 20264 1897 19628 375920;375921;375922;375923;375924 229877;229878;229879 229877 3 TNVDLQIR Unmodified 957.52434 0.52434406 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.335 21.972 2 0.00061101 9063 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.64 71.856 2219400000 110700000 87431000 99292000 5049500 4964500 4481500 188890000 183980000 175450000 4084100 2835400 2472800 184740000 176160000 164020000 1913400 1252900 1916400 250560000 287010000 266010000 4524700 5610300 6093500 20265 1236 19629 375925;375926;375927;375928;375929;375930;375931;375932;375933;375934;375935;375936;375937;375938;375939;375940;375941;375942;375943;375944;375945;375946;375947;375948 229880;229881;229882;229883;229884;229885;229886;229887;229888;229889;229890;229891;229892;229893;229894;229895 229892 16 TNVLFFTK Unmodified 968.53312 0.53311783 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.958 35.208 2 0.0010109 17509 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.71 113.71 184820000 7798400 8781100 7876300 0 0 0 14309000 12875000 14814000 0 0 674700 13162000 14245000 12685000 0 0 0 26901000 23572000 24769000 928040 0 1430700 20266 194 19630 375949;375950;375951;375952;375953;375954;375955;375956;375957;375958;375959;375960;375961;375962;375963 229896;229897;229898;229899;229900;229901;229902;229903;229904;229905;229906 229896 11 TNVLIVEDEQAIR Unmodified 1498.7991 0.79912193 1187 P21866 kdpE KDP operon transcriptional regulatory protein KdpE yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 35.313 33.491 2 0.13803 12821 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 35.959 20.694 53467000 0 0 0 2450400 2215600 2161700 0 38063000 0 0 0 0 0 0 0 0 0 0 0 0 0 2543600 2974500 3057800 20267 1187 19631 375964;375965;375966;375967;375968;375969;375970 229907 229907 1 TNVPHIFAIGDIVGQPMLAHK Oxidation (M) 2273.1991 0.19905752 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 1 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 4 4 7 6 6 4 2 3 3 5 5 3 4 4 1 1 5 3 4 7 7 5 43.478 41.713 3;4 8.5406E-07 15664 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 94.958 91.496 2426200000 51117000 71627000 47940000 364580000 337660000 337930000 52512000 26388000 43212000 29202000 44095000 35838000 30730000 39335000 30415000 6964400 3161900 0 83507000 50845000 62310000 304150000 196570000 176070000 20268 542 19632 375971;375972;375973;375974;375975;375976;375977;375978;375979;375980;375981;375982;375983;375984;375985;375986;375987;375988;375989;375990;375991;375992;375993;375994;375995;375996;375997;375998;375999;376000;376001;376002;376003;376004;376005;376006;376007;376008;376009;376010;376011;376012;376013;376014;376015;376016;376017;376018;376019;376020;376021;376022;376023;376024;376025;376026;376027;376028;376029;376030;376031;376032;376033;376034;376035;376036;376037;376038;376039;376040;376041;376042;376043;376044;376045;376046;376047;376048;376049;376050;376051;376052;376053;376054;376055;376056;376057;376058;376059;376060;376061;376062;376063;376064;376065;376066 229908;229909;229910;229911;229912;229913;229914;229915;229916;229917;229918;229919;229920;229921;229922;229923;229924;229925;229926;229927;229928;229929;229930;229931;229932;229933;229934;229935;229936;229937;229938;229939;229940;229941;229942;229943;229944;229945;229946;229947;229948;229949;229950;229951;229952;229953;229954;229955;229956;229957;229958;229959;229960;229961;229962 229944 330 55 TNVPHIFAIGDIVGQPMLAHK Unmodified 2257.2041 0.2041429 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 6 7 8 4 5 4 4 4 4 4 4 4 2 2 2 4 4 4 6 6 7 45.701 44.164 2;3;4;5 1.5911E-34 21409 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 273.35 268.72 54192000000 2201700000 2143400000 2076700000 5109800000 4591400000 5034000000 1475800000 1698000000 1523200000 679720000 765690000 827270000 1302900000 1220800000 965710000 344330000 281190000 289440000 2231700000 2057000000 2131200000 4630400000 5535300000 5074800000 20269 542 19632 376067;376068;376069;376070;376071;376072;376073;376074;376075;376076;376077;376078;376079;376080;376081;376082;376083;376084;376085;376086;376087;376088;376089;376090;376091;376092;376093;376094;376095;376096;376097;376098;376099;376100;376101;376102;376103;376104;376105;376106;376107;376108;376109;376110;376111;376112;376113;376114;376115;376116;376117;376118;376119;376120;376121;376122;376123;376124;376125;376126;376127;376128;376129;376130;376131;376132;376133;376134;376135;376136;376137;376138;376139;376140;376141;376142;376143;376144;376145;376146;376147;376148;376149;376150;376151;376152;376153;376154;376155;376156;376157;376158;376159;376160;376161;376162;376163;376164;376165;376166;376167;376168;376169;376170;376171;376172;376173 229963;229964;229965;229966;229967;229968;229969;229970;229971;229972;229973;229974;229975;229976;229977;229978;229979;229980;229981;229982;229983;229984;229985;229986;229987;229988;229989;229990;229991;229992;229993;229994;229995;229996;229997;229998;229999;230000;230001;230002;230003;230004;230005;230006;230007;230008;230009;230010;230011;230012;230013;230014;230015;230016;230017;230018;230019;230020;230021;230022;230023;230024;230025;230026;230027;230028;230029;230030;230031;230032;230033;230034;230035;230036;230037;230038;230039;230040;230041;230042;230043;230044;230045;230046;230047;230048;230049;230050;230051;230052;230053;230054;230055;230056;230057;230058;230059;230060;230061;230062 230050 100 TNWTSLLNGGR Unmodified 1217.6153 0.61528433 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 40.247 38.82 2 0.00023067 18932 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.57 82.505 58816000 20629000 17602000 16580000 0 0 0 0 0 0 0 0 0 0 0 4005500 0 0 0 0 0 0 0 0 0 20270 1464 19633 376174;376175;376176;376177 230063;230064;230065 230064 3 TNYDHPSAMDHSLLLEHLQALK Unmodified 2532.2431 0.24310718 425 P0A8F4 udk Uridine kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 2 2 2 3 3 3 3 3 3 2 2 2 35.833 34.104 3;4;5 1.9934E-07 16195 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.37 108.01 785040000 69495000 67107000 50979000 2790300 3350500 3102600 50079000 57621000 59788000 13117000 16819000 8700400 62872000 49638000 47639000 0 0 0 53456000 73703000 66297000 8456900 10584000 9446900 20271 425 19634 376178;376179;376180;376181;376182;376183;376184;376185;376186;376187;376188;376189;376190;376191;376192;376193;376194;376195;376196;376197;376198;376199;376200;376201;376202;376203;376204;376205;376206;376207;376208;376209;376210;376211;376212;376213;376214;376215;376216;376217;376218;376219;376220;376221;376222;376223;376224;376225;376226;376227;376228;376229;376230;376231 230066;230067;230068;230069;230070;230071;230072;230073;230074;230075;230076;230077;230078;230079;230080;230081 230077 16 TNYDHPSAMDHSLLLEHLQALKR Unmodified 2688.3442 0.34421821 425 P0A8F4 udk Uridine kinase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 2 2 1 1 2 1 2 31.558 30.181 4;5 7.8328E-07 12081 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 103.26 101.73 132640000 0 0 0 5024500 5314100 2274700 0 0 0 21062000 31789000 13057000 0 0 3266300 9484200 5837000 7532200 0 2240600 2946700 8926000 3785000 10104000 20272 425 19635 376232;376233;376234;376235;376236;376237;376238;376239;376240;376241;376242;376243;376244;376245;376246;376247;376248;376249;376250;376251;376252;376253;376254;376255;376256 230082;230083;230084;230085;230086;230087;230088;230089;230090;230091;230092 230085 11 TPAAEITPR Unmodified 954.51345 0.51344502 1754 P69874 potA Spermidine/putrescine import ATP-binding protein PotA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.92 15.413 2 0.00014665 4207 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 131.22 105.49 185860000 9194100 12222000 0 3149300 2952100 3440200 16374000 19488000 18272000 6553500 5531000 6483700 0 17138000 0 4175200 2542400 2661200 23717000 19886000 0 6481400 0 5597100 20273 1754 19636 376257;376258;376259;376260;376261;376262;376263;376264;376265;376266;376267;376268;376269;376270;376271;376272;376273;376274;376275 230093;230094;230095;230096;230097;230098;230099;230100;230101;230102;230103;230104 230095 5 TPADEALDTELNQR Unmodified 1571.7427 0.74272927 114 P05704 trg Methyl-accepting chemotaxis protein III yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 28.858 27.511 2;3 1.814E-19 9263 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 206.97 195.4 90021000 0 13086000 10136000 20687000 21945000 24167000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20274 114 19637 376276;376277;376278;376279;376280;376281;376282;376283 230105;230106;230107;230108;230109;230110;230111;230112 230105 4 TPADFLTLVK Unmodified 1103.6227 0.62266112 1561 P42904 agaV N-acetylgalactosamine-specific phosphotransferase enzyme IIB component 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.888 44.423 2 0.0036944 21786 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 81.338 55.444 118070000 16554000 22516000 17558000 0 0 0 6913100 7537500 5700400 0 0 0 7711600 7904200 5739500 0 0 0 6328700 5029100 8577600 0 0 0 20275 1561 19638 376284;376285;376286;376287;376288;376289;376290;376291;376292;376293;376294;376295 230113;230114;230115;230116;230117;230118;230119;230120;230121 230117 9 TPAGYPSGSLGPTTAGR Unmodified 1588.7845 0.7845345 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 22.971 22.41 2 1.4012E-08 9150 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 119.39 116.65 503130000 7509900 4830400 0 0 0 0 97166000 85724000 90702000 0 0 0 62036000 53156000 58383000 0 0 0 14822000 14285000 14515000 0 0 0 20276 1097 19639 376296;376297;376298;376299;376300;376301;376302;376303;376304;376305;376306 230122 230122 1 TPAIPYEDLSVAR Unmodified 1430.7405 0.74054442 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.937 36.241 2 6.1247E-07 17558 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143.96 133.73 801730000 68529000 66780000 61493000 20067000 17991000 17984000 58530000 63072000 62817000 0 0 0 32905000 36805000 34661000 0 0 0 88365000 86566000 84529000 0 0 642050 20277 252 19640 376307;376308;376309;376310;376311;376312;376313;376314;376315;376316;376317;376318;376319;376320;376321;376322 230123;230124;230125;230126;230127;230128;230129;230130;230131;230132 230125 9 TPAQFVGYR Unmodified 1037.5294 0.52942943 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.664 22.178 2 1.11E-07 9404 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 181.49 178.79 996100000 209030000 188170000 186120000 0 0 0 0 73237000 61922000 0 0 0 27272000 40157000 29001000 0 0 0 60562000 59085000 61547000 0 0 0 20278 1465 19641 376323;376324;376325;376326;376327;376328;376329;376330;376331;376332;376333;376334 230133;230134;230135;230136;230137;230138;230139;230140;230141;230142;230143;230144 230138 12 TPAQIVIR Unmodified 896.54435 0.54435122 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.642 21.048 2 2.4781E-06 8259 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 185.42 164.16 2273500000 422440000 415450000 359450000 0 0 0 262670000 245420000 233830000 0 0 0 47466000 48991000 42346000 0 0 0 55078000 71392000 68957000 0 0 0 20279 1960 19642 376335;376336;376337;376338;376339;376340;376341;376342;376343;376344;376345;376346 230145;230146;230147;230148;230149;230150;230151 230149 7 TPASFEPSIDYVVTK Unmodified 1652.8298 0.82975336 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 1 1 2 1 1 2 1 2 2 2 1 1 1 40.39 38.672 2;3 1.1139E-45 18725 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 283.43 275.87 2167500000 494450000 430180000 403110000 1616200 1918000 1903100 4888400 5509700 25233000 0 0 1084300 48819000 63740000 43601000 0 0 0 203190000 215010000 202520000 6876200 7627700 6172300 20280 65 19643 376347;376348;376349;376350;376351;376352;376353;376354;376355;376356;376357;376358;376359;376360;376361;376362;376363;376364;376365;376366;376367;376368;376369;376370;376371;376372;376373 230152;230153;230154;230155;230156;230157;230158;230159;230160;230161;230162;230163;230164;230165;230166 230160 14 TPATPDQAEK Unmodified 1056.5088 0.50875357 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.914 11.73 2 5.8804E-09 2899 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 191.17 178.59 1724700000 198050000 164040000 170050000 0 0 0 167960000 180400000 153480000 0 0 0 105270000 102730000 98916000 0 0 0 143900000 118250000 121660000 0 0 0 20281 94 19644 376374;376375;376376;376377;376378;376379;376380;376381;376382;376383;376384;376385 230167;230168;230169;230170;230171;230172;230173;230174;230175 230172 9 TPATTLTPPEVK Unmodified 1253.6867 0.68671794 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.548 23.572 2 4.1453E-17 10591 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 217.66 213.05 215320000 10471000 10428000 8247000 0 0 0 25652000 29587000 25091000 0 0 0 18670000 17757000 14947000 0 0 0 16133000 20875000 17459000 0 0 0 20282 1961 19645 376386;376387;376388;376389;376390;376391;376392;376393;376394;376395;376396;376397 230176;230177;230178;230179;230180;230181;230182;230183;230184;230185 230178 9 TPAVIKK Unmodified 755.49052 0.49052473 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.662 11.227 2 0.0012508 2240 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 139.27 63.998 1482400000 22257000 26748000 33016000 7478900 0 4931700 25488000 13095000 17391000 18801000 20259000 20758000 10134000 9578900 9054400 435690000 371620000 353900000 20365000 24348000 17738000 6475500 7908100 5313100 20283 728 19646 376398;376399;376400;376401;376402;376403;376404;376405;376406;376407;376408;376409;376410;376411;376412;376413;376414;376415;376416;376417;376418;376419;376420;376421 230186;230187;230188;230189;230190;230191;230192;230193;230194 230188 9 TPAWLSEGR Unmodified 1015.5087 0.50869399 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.485 25.365 2 3.2172E-06 10816 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 176.09 169.7 482100000 0 5155500 0 0 0 0 83137000 73294000 78163000 3713200 2932800 2737300 54071000 48141000 41467000 1122900 621170 1018200 29300000 28161000 25056000 1100400 1396500 1516300 20284 506 19647 376422;376423;376424;376425;376426;376427;376428;376429;376430;376431;376432;376433;376434;376435;376436;376437;376438;376439;376440 230195;230196;230197;230198;230199;230200;230201 230201 6 TPDAHFFTEVR Unmodified 1318.6306 0.63060004 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 27.49 26.152 2;3 4.169E-05 9366 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 130.98 122.76 1013900000 27717000 25293000 25390000 0 5206000 2814600 94071000 85354000 84408000 28490000 29419000 25457000 45644000 37255000 43763000 3823400 4087800 2434900 69446000 77003000 63028000 81797000 72199000 79805000 20285 205;1157 19648 376441;376442;376443;376444;376445;376446;376447;376448;376449;376450;376451;376452;376453;376454;376455;376456;376457;376458;376459;376460;376461;376462;376463;376464;376465;376466;376467;376468;376469;376470;376471;376472 230202;230203;230204;230205;230206;230207;230208;230209;230210;230211;230212;230213;230214;230215;230216;230217;230218;230219;230220;230221;230222;230223;230224;230225;230226;230227;230228;230229;230230 230219 29 TPDAPALADAR Unmodified 1096.5513 0.55128709 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 19.526 20.042 2 0.095044 7717 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 42.161 35.038 99959000 4707400 4006700 3115300 0 0 0 7747600 5150600 0 0 0 0 10148000 10465000 10612000 0 0 0 16779000 14354000 12873000 0 0 0 20286 1070 19649 376473;376474;376475;376476;376477;376478;376479;376480;376481;376482;376483 230231 230231 0 TPDDLPAFNR Unmodified 1144.5513 0.55128709 1570 P45470 yhbO Protein YhbO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 28.767 27.496 2 0.00014191 12685 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.62 114.27 435060000 94544000 86122000 72492000 0 0 0 43583000 50440000 41952000 0 0 0 7484000 7809800 0 0 0 0 10268000 12033000 8331300 0 0 0 20287 1570 19650 376484;376485;376486;376487;376488;376489;376490;376491;376492;376493;376494 230232;230233;230234;230235;230236;230237;230238 230236 6 TPDLPNFAETFAR Unmodified 1477.7201 0.72014333 1385 P32099 lplA Lipoate-protein ligase A yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.739 45.504 2 0.024479 22096 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 57.174 52.875 61610000 9610100 10033000 9793400 0 0 0 0 0 0 0 0 0 9830500 0 10053000 0 0 0 0 0 12290000 0 0 0 20288 1385 19651 376495;376496;376497;376498;376499;376500 230239 230239 0 TPDTELFLLPGMANR Unmodified 1673.8447 0.84469192 1528 P39342 yjgR Uncharacterized protein YjgR yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 52.188 51.001 2 0.015261 25106 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.531 47.514 238710000 23936000 25060000 27210000 0 5083400 4291900 0 0 0 0 0 0 23746000 32253000 31737000 0 0 0 34543000 0 30851000 0 0 0 20289 1528 19652 376501;376502;376503;376504;376505;376506;376507;376508;376509;376510 230240;230241 230240 2 TPDVLLSDIR Unmodified 1127.6186 0.61863837 925 P0AFB8 glnG Nitrogen regulation protein NR(I) yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 37.042 35.443 2 0.0026498 17071 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 77.662 62 51176000 13142000 11414000 8774600 1071700 1296000 992330 0 0 0 0 0 0 0 0 0 0 0 0 6377400 4312900 3795000 0 0 0 20290 925 19653 376511;376512;376513;376514;376515;376516;376517;376518;376519 230242;230243 230242 2 TPEAALNFMR Unmodified 1148.5648 0.56482866 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 34.612 33.163 2 3.3011E-23 15620 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 255.54 250.1 741370000 98567000 93846000 87180000 0 0 0 71153000 73374000 68549000 0 0 0 33716000 35593000 29371000 0 0 0 49710000 52023000 48285000 0 0 0 20291 1233 19654 376520;376521;376522;376523;376524;376525;376526;376527;376528;376529;376530;376531 230244;230245;230246;230247;230248;230249;230250;230251;230252;230253;230254;230255 230252 12 TPEAEEIIAR Unmodified 1127.5823 0.58225287 109 P05194 aroD 3-dehydroquinate dehydratase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.388 22.667 2 1.0499E-06 9623 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 169.12 150.72 386020000 56994000 48735000 47514000 0 0 0 29122000 28041000 23834000 0 0 0 27867000 20170000 18512000 0 0 0 28014000 31139000 26076000 0 0 0 20292 109 19655 376532;376533;376534;376535;376536;376537;376538;376539;376540;376541;376542;376543 230256 230256 1 TPEDIEK Unmodified 830.40216 0.40216323 829 P0AE18 map Methionine aminopeptidase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.415 12.254 2 0.0019675 3260 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 120.62 26.615 741780000 75033000 91678000 83407000 0 0 0 64223000 0 60501000 0 0 0 69183000 42615000 50957000 0 0 0 63514000 69430000 71242000 0 0 0 20293 829 19656 376544;376545;376546;376547;376548;376549;376550;376551;376552;376553;376554 230257;230258;230259;230260;230261;230262 230257 6 TPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPR Unmodified 3672.6737 0.67372959 211 P09372 grpE Protein GrpE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 43.062 41.279 3;4 2.4229E-69 20119 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 267.78 263.16 4692700000 298320000 334750000 275380000 8624100 9727100 7753000 399820000 407080000 318670000 63976000 58413000 41446000 366910000 428210000 341070000 0 0 0 453190000 436180000 417120000 11629000 0 14402000 20294 211 19657 376555;376556;376557;376558;376559;376560;376561;376562;376563;376564;376565;376566;376567;376568;376569;376570;376571;376572;376573;376574;376575;376576;376577;376578;376579;376580;376581;376582;376583;376584;376585;376586;376587;376588;376589;376590;376591;376592;376593;376594 230263;230264;230265;230266;230267;230268;230269;230270;230271;230272;230273;230274;230275;230276;230277;230278;230279;230280;230281;230282;230283;230284;230285;230286;230287;230288;230289;230290;230291;230292;230293;230294;230295;230296;230297;230298;230299;230300;230301;230302;230303 230279 41 TPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEK Unmodified 4044.8382 0.83822873 211 P09372 grpE Protein GrpE yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 39.986 37.873 4 3.4629E-22 15275 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 135.75 135.75 44526000 0 0 0 2800100 2888900 3597200 0 0 0 11158000 10090000 7342500 0 0 0 0 0 0 0 0 0 0 3185400 3463900 20295 211 19658 376595;376596;376597;376598;376599;376600;376601;376602 230304;230305;230306;230307;230308;230309;230310;230311 230304 8 TPEGYASGSLGPTTAGR Unmodified 1620.7744 0.77436375 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 1 2 2 2 1 1 1 21.932 21.851 2;3 2.5697E-75 8931 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 329.77 329.77 1585000000 240640000 204990000 176950000 2748800 2704600 2271500 80815000 65923000 71598000 3038700 4171000 2609200 95331000 90672000 74950000 1190200 0 0 148510000 159640000 150670000 2078000 1669000 1801200 20296 696 19659 376603;376604;376605;376606;376607;376608;376609;376610;376611;376612;376613;376614;376615;376616;376617;376618;376619;376620;376621;376622;376623;376624;376625;376626;376627;376628;376629;376630;376631;376632;376633;376634;376635;376636;376637 230312;230313;230314;230315;230316;230317;230318;230319;230320;230321;230322;230323;230324;230325;230326;230327;230328;230329;230330;230331;230332;230333;230334;230335 230321 24 TPELMQK Unmodified 845.43169 0.43168922 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.296 15.106 2 0.00084363 3641 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 143.37 143.37 604550000 12928000 8521800 10394000 3015800 2704400 2704700 85257000 95627000 81688000 0 0 0 63777000 60019000 60843000 0 0 0 37848000 39997000 39223000 0 0 0 20297 25 19660 376638;376639;376640;376641;376642;376643;376644;376645;376646;376647;376648;376649;376650;376651;376652 230336;230337 230336 2 TPELNLFK Unmodified 960.52803 0.52803245 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 3 3 3 2 2 3 3 3 35.229 33.741 1;2 8.7248E-05 16189 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 163.67 152.6 1903800000 180250000 130720000 107920000 0 0 0 199730000 186780000 177420000 0 0 0 142240000 143980000 125580000 0 0 0 179590000 168530000 161060000 0 0 0 20298 702 19661 376653;376654;376655;376656;376657;376658;376659;376660;376661;376662;376663;376664;376665;376666;376667;376668;376669;376670;376671;376672;376673;376674;376675;376676;376677;376678;376679;376680;376681;376682;376683;376684 230338;230339;230340;230341;230342;230343;230344;230345;230346;230347;230348;230349;230350;230351 230343 10 TPEMPVLENR Unmodified 1184.586 0.58595803 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.328 27.07 2 3.8086E-12 12633 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 204.7 201.13 712220000 0 0 0 0 0 1755200 60449000 53437000 57468000 0 0 0 76195000 70997000 69562000 0 0 1329600 104790000 108990000 105880000 1382800 0 0 20299 38 19662 376685;376686;376687;376688;376689;376690;376691;376692;376693;376694;376695;376696 230352;230353;230354;230355;230356;230357;230358 230352 7 TPETHPLTWR Unmodified 1236.6251 0.62512073 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 2 18.277 18.749 2;3 2.1484E-13 6657 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 254.36 222.43 934600000 60984000 60232000 60940000 23752000 17839000 19826000 45613000 53399000 60214000 7793900 5636700 5480400 60876000 65175000 64200000 0 0 3983600 94098000 102220000 104730000 4269300 5790900 7557900 20300 1383 19663 376697;376698;376699;376700;376701;376702;376703;376704;376705;376706;376707;376708;376709;376710;376711;376712;376713;376714;376715;376716;376717;376718;376719;376720;376721;376722;376723;376724;376725;376726;376727;376728;376729;376730;376731;376732;376733;376734 230359;230360;230361;230362;230363;230364;230365;230366;230367;230368;230369;230370;230371;230372;230373;230374;230375;230376;230377;230378;230379;230380;230381;230382;230383;230384;230385;230386;230387;230388;230389 230385 29 TPEVALSR Unmodified 871.47633 0.47633123 1533 P39377 iadA Isoaspartyl dipeptidase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.498 17.255 2 0.0015526 5766 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 107.9 61.525 188260000 20292000 23566000 20904000 0 0 0 19426000 22114000 16781000 0 0 0 10247000 8865800 7879900 0 0 0 12680000 12323000 13177000 0 0 0 20301 1533 19664 376735;376736;376737;376738;376739;376740;376741;376742;376743;376744;376745;376746 230390;230391 230391 2 TPEYDELFSGDPIWATESIGGMGLDGR Unmodified 2912.3175 0.31745391 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 55.312 53.838 2;3 2.3431E-172 26813 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 411.75 409.04 6632100000 221960000 207970000 223460000 0 6822000 0 628330000 637450000 651020000 18491000 8756000 7507000 991460000 913640000 800630000 0 0 0 397210000 432360000 478290000 0 6782200 0 20302 212 19665 376747;376748;376749;376750;376751;376752;376753;376754;376755;376756;376757;376758;376759;376760;376761;376762;376763;376764;376765;376766;376767;376768;376769;376770;376771;376772;376773;376774;376775;376776;376777 230392;230393;230394;230395;230396;230397;230398;230399;230400;230401;230402;230403;230404;230405;230406;230407;230408;230409 230393 18 TPEYDELFSGDPIWATESIGGMGLDGR Oxidation (M) 2928.3124 0.31236853 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 2 2 2 2 2 2 1 1 2 55.002 53.531 2 1.1013E-40 26567 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 211.7 207.66 362060000 16264000 10779000 12559000 0 0 0 42053000 41645000 42369000 0 0 0 47488000 47473000 37912000 0 0 0 17436000 20226000 25856000 0 0 0 20303 212 19665 376778;376779;376780;376781;376782;376783;376784;376785;376786;376787;376788;376789;376790;376791;376792;376793;376794;376795;376796;376797;376798 230410;230411;230412;230413;230414;230415 230412 81 2 TPFKLEFYHQGMYFDTPVK Unmodified 2347.1347 0.13472593 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 1 1 42.16 40.051 3;4 1.0364E-05 15678 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 87.49 83.758 104900000 0 0 0 4210800 3876100 2652300 0 0 0 14026000 19210000 16282000 0 0 0 0 0 0 0 0 0 19642000 12271000 12727000 20304 1408 19666 376799;376800;376801;376802;376803;376804;376805;376806;376807;376808;376809;376810;376811;376812 230416;230417;230418;230419;230420;230421;230422;230423 230421 8 TPFLAWCEQR Unmodified 1306.6128 0.61284149 1114 P15770 aroE Shikimate dehydrogenase (NADP(+)) yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.39 36.717 2 7.4386E-05 17859 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.84 98.753 116930000 13984000 11095000 11138000 0 0 0 8107200 10697000 5025400 0 0 0 6948800 6797800 7437800 0 0 0 14456000 10335000 10903000 0 0 0 20305 1114 19667 376813;376814;376815;376816;376817;376818;376819;376820;376821;376822;376823;376824 230424;230425;230426 230425 3 TPFTDEHLQPFER Unmodified 1615.7631 0.76307078 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 31.122 29.761 2;3 2.3661E-17 13961 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 208.17 201.93 523300000 33532000 33754000 27495000 0 0 0 41520000 29849000 8523100 0 1868500 0 49355000 46137000 45602000 0 1078600 0 65828000 68703000 65511000 1434100 1505100 1601000 20306 194 19668 376825;376826;376827;376828;376829;376830;376831;376832;376833;376834;376835;376836;376837;376838;376839;376840;376841;376842;376843;376844;376845;376846;376847;376848;376849;376850;376851 230427;230428;230429;230430;230431;230432;230433;230434;230435;230436;230437;230438;230439;230440 230430 13 TPGGAPSTSEEVLEELALDYPLPK Unmodified 2512.2585 0.2584657 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By MS/MS By matching By MS/MS 1 1 1 1 54.978 54.694 3 7.991E-05 21405 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 81.48 78.638 49322000 0 0 0 3638000 0 0 0 0 0 0 0 0 0 0 0 14664000 14125000 16895000 0 0 0 0 0 0 20307 37 19669 376852;376853;376854;376855 230441;230442 230441 2 TPGGEVEFEVIK Unmodified 1303.666 0.66598249 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 34.03 32.694 2 2.1989E-17 14809 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 221.5 213.04 2038600000 119620000 111650000 103700000 0 0 0 184830000 181200000 168370000 0 0 0 190000000 163880000 184350000 0 0 1004500 212550000 217160000 200310000 0 0 0 20308 288 19670 376856;376857;376858;376859;376860;376861;376862;376863;376864;376865;376866;376867;376868 230443;230444;230445;230446;230447;230448;230449;230450;230451;230452;230453;230454 230454 12 TPGGEVEFEVIKVEYL Unmodified 1807.9244 0.92438203 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 52.914 51.509 2 1.5727E-23 25167 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 208.95 202.52 207030000 9919400 8542200 7182100 0 0 0 20305000 19494000 16151000 1819900 1655400 0 24763000 16343000 14884000 0 0 0 19234000 23739000 22996000 0 0 0 20309 288 19671 376869;376870;376871;376872;376873;376874;376875;376876;376877;376878;376879;376880;376881;376882;376883 230455;230456;230457;230458;230459;230460;230461;230462;230463 230458 9 TPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAER Unmodified 3443.7685 0.76849709 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 53.057 51.62 3;4 3.9532E-44 25321 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 209.4 204.34 913110000 185030000 225470000 137610000 0 914380 0 83718000 95655000 87452000 0 0 1024800 20962000 0 22379000 0 0 0 25800000 27090000 0 0 0 0 20310 1423 19672 376884;376885;376886;376887;376888;376889;376890;376891;376892;376893;376894;376895;376896 230464;230465;230466;230467;230468;230469;230470;230471;230472 230468 9 TPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEK Unmodified 3393.6875 0.68746958 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 2 1 1 2 51.681 50.449 3;4 3.899E-35 24784 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 201.73 200.18 2336500000 136150000 139500000 85712000 0 1471300 0 211000000 206550000 181700000 0 0 0 280260000 280630000 179260000 0 0 0 207640000 167210000 259410000 0 0 0 20311 1299 19673 376897;376898;376899;376900;376901;376902;376903;376904;376905;376906;376907;376908;376909;376910;376911;376912;376913;376914;376915;376916 230473;230474;230475;230476;230477;230478;230479;230480;230481;230482;230483;230484;230485;230486;230487;230488 230475 16 TPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMR Unmodified 4464.1719 0.17186435 1003 P0AGB0 serB Phosphoserine phosphatase yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 44.302 42.784 4 0.15459 17153 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 6.9752 3.3047 1605100000 0 0 0 0 0 0 0 0 0 102570000 225980000 106070000 0 0 0 343310000 156240000 144940000 0 0 0 161580000 203140000 161230000 20312 1003 19674 376917;376918;376919;376920;376921;376922;376923;376924;376925;376926 230489;230490 230490 2 TPGNIAAIR Unmodified 911.51886 0.51886475 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.355 18.791 2 9.5966E-05 7218 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 137.18 116.19 289040000 21864000 23808000 25235000 0 0 0 24595000 26250000 19997000 2673300 2179100 2691900 22363000 18418000 15473000 0 0 0 27283000 28351000 27858000 0 0 0 20313 564 19675 376927;376928;376929;376930;376931;376932;376933;376934;376935;376936;376937;376938;376939;376940;376941 230491;230492;230493 230493 3 TPGNIAAIRPMK Unmodified 1267.7071 0.70707622 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 19.612 19.867 2;3 5.068E-09 6115 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 192.92 191.72 2157900000 107210000 109490000 100100000 42280000 35540000 45884000 113800000 123970000 132780000 107330000 105490000 106430000 24700000 96528000 82700000 35566000 25228000 24505000 174550000 146790000 164640000 84580000 84725000 83122000 20314 564 19676 376942;376943;376944;376945;376946;376947;376948;376949;376950;376951;376952;376953;376954;376955;376956;376957;376958;376959;376960;376961;376962;376963;376964;376965;376966;376967;376968;376969;376970;376971;376972;376973;376974;376975;376976;376977;376978;376979;376980;376981;376982;376983;376984;376985;376986;376987;376988 230494;230495;230496;230497;230498;230499;230500;230501;230502;230503;230504;230505;230506;230507;230508;230509;230510;230511;230512;230513;230514;230515;230516;230517;230518;230519;230520;230521;230522;230523;230524;230525;230526;230527;230528;230529;230530;230531;230532;230533;230534;230535;230536 230512 42 TPGNIAAIRPMK Oxidation (M) 1283.702 0.70199085 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 1 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 16.149 16.369 2 0.00081806 4516 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 80.787 76.322 12592000 0 0 0 0 0 282560 0 0 0 2383600 1528700 1438600 0 0 0 0 0 0 0 0 0 2324100 2007200 2626800 20315 564 19676 376989;376990;376991;376992;376993;376994;376995 230537;230538 230537 339 2 TPGQTLLKPTAQ Unmodified 1253.698 0.69795133 488 P0A951 speG Spermidine N(1)-acetyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.774 21.13 2 1.9287E-11 8410 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.99 174.84 279460000 44021000 41335000 36469000 0 0 0 13092000 11801000 11496000 0 0 0 20036000 18167000 20467000 0 0 0 21024000 21514000 20039000 0 0 0 20316 488 19677 376996;376997;376998;376999;377000;377001;377002;377003;377004;377005;377006;377007 230539;230540;230541;230542;230543;230544;230545;230546;230547;230548;230549;230550 230543 12 TPGREDATEDAK Unmodified 1288.5895 0.58952309 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 2 2 2 2 2 1 2 1 1 1 1 1 1 1 1 7.7233 8.5336 2;3 4.8155E-05 1278 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.74 79.545 483610000 0 19277000 13892000 5144300 4775500 4834500 56455000 49602000 35987000 14751000 19532000 21225000 44719000 36589000 25513000 0 0 0 42621000 40330000 42610000 5750700 0 0 20317 1742 19678 377008;377009;377010;377011;377012;377013;377014;377015;377016;377017;377018;377019;377020;377021;377022;377023;377024;377025;377026;377027;377028;377029;377030;377031;377032 230551;230552;230553;230554;230555;230556;230557;230558;230559;230560 230552 10 TPHAWYFQQAGNGIFAR Unmodified 1962.9489 0.94891449 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 2 1 1 1 38.741 37.275 2;3 2.1702E-11 18059 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 211.68 201.63 715630000 254100000 211500000 228260000 0 0 0 0 0 0 0 0 0 0 2451300 2310800 0 0 0 0 17006000 0 0 0 0 20318 318 19679 377033;377034;377035;377036;377037;377038;377039;377040 230561;230562;230563;230564;230565 230564 5 TPHIQNLAVGGVANPINLDGLGVLNLER Unmodified 2893.5774 0.57738926 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 2 2 2 2 1 1 1 2 2 2 1 2 2 53.124 51.849 3;4 5.8441E-31 25311 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 181.62 176.09 1852100000 0 0 0 0 0 0 14755000 8015200 12081000 41246000 33627000 31216000 234580000 249810000 254280000 14130000 18438000 22361000 283020000 288520000 270870000 28978000 23995000 22135000 20319 723 19680 377041;377042;377043;377044;377045;377046;377047;377048;377049;377050;377051;377052;377053;377054;377055;377056;377057;377058;377059;377060;377061;377062;377063;377064;377065;377066;377067;377068;377069 230566;230567;230568;230569;230570;230571;230572;230573;230574;230575;230576;230577;230578;230579;230580 230576 15 TPHWLIK Unmodified 893.51232 0.51232281 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.558 20.744 2 0.0023081 6500 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 114.59 104.28 242770000 12208000 15560000 10294000 2826200 2735900 2969100 9715300 6786700 7048900 8031700 8263200 6419100 9132900 10130000 6803000 0 0 0 29361000 22333000 35070000 12534000 10898000 13647000 20320 215 19681 377070;377071;377072;377073;377074;377075;377076;377077;377078;377079;377080;377081;377082;377083;377084;377085;377086;377087;377088;377089;377090 230581;230582;230583;230584;230585;230586 230582 6 TPIADLAR Unmodified 855.48142 0.48141661 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.427 21.628 2 0.138 8414 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 42.599 22.078 160140000 44949000 40714000 41031000 0 0 0 0 0 3803100 0 0 0 5821400 5311200 6194800 0 0 0 0 6395500 5915000 0 0 0 20321 204 19682 377091;377092;377093;377094;377095;377096;377097;377098;377099 230587;230588 230588 2 TPIAEGGK Unmodified 771.41267 0.41266834 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 10.823 11.522 2 0.0021791 2831 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.75 51.225 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20322 1816 19683 377100;377101;377102 230589;230590;230591 230589 3 TPIAHTMAWPNR Unmodified 1393.6925 0.69248879 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 22.362 21.948 3 0.00040452 9494 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 62.338 56.836 125100000 11417000 7789000 8102900 0 0 0 12782000 13447000 10679000 0 0 0 11966000 12526000 0 0 0 0 9951100 13985000 12453000 0 0 0 20323 1575 19684 377103;377104;377105;377106;377107;377108;377109;377110;377111;377112;377113 230592;230593;230594 230594 1 TPIGCFR Unmodified 849.41671 0.41670786 1969 Q46939 yqeF Probable acetyl-CoA acetyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.317 19.579 2 0.027836 6196 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 69.234 54.214 42445000 0 2395900 0 0 0 0 0 3403100 0 2742300 2529600 2534900 1915500 0 2262500 917600 353540 443550 6513900 8023300 6380600 0 2029000 0 20324 1969 19685 377114;377115;377116;377117;377118;377119;377120;377121;377122;377123;377124;377125;377126;377127 230595;230596 230595 1 TPIHPNIFYFSTEK Unmodified 1692.8512 0.8511575 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 36.587 35.052 2 8.3338E-08 16801 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.26 121.18 107300000 9340700 8592500 10279000 0 0 0 14141000 0 0 0 0 0 8835600 8994100 6541500 0 0 0 11549000 13424000 15604000 0 0 0 20325 883 19686 377128;377129;377130;377131;377132;377133;377134;377135;377136;377137 230597;230598;230599;230600;230601 230599 4 TPISGDYR Unmodified 907.43995 0.43994572 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.021 14.482 2 0.054711 4374 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 58.782 49.86 78562000 0 0 0 0 0 0 0 0 0 3104100 0 2762100 8569500 7665200 6706800 7363500 8597900 8207300 10428000 10673000 0 0 4484400 0 20326 1155 19687 377138;377139;377140;377141;377142;377143;377144;377145;377146;377147;377148 230602;230603;230604 230602 2 TPIVVNDCPGFFVNR Unmodified 1733.8559 0.85592531 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 41.893 40.354 2 1.366E-35 19826 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 258.48 253.39 135020000 47722000 45970000 41331000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20327 1173 19688 377149;377150;377151 230605;230606;230607 230605 3 TPKPIAQALAEGK Unmodified 1322.7558 0.75580056 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 18.844 19.194 2;3 1.8475E-08 7191 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 184.98 148.6 3042500000 273520000 317190000 217470000 8165700 6905000 6700500 51891000 81891000 72754000 6728500 9084300 8297300 132930000 104690000 102170000 436960000 250160000 329150000 202790000 189530000 198810000 11809000 11947000 10972000 20328 729 19689 377152;377153;377154;377155;377156;377157;377158;377159;377160;377161;377162;377163;377164;377165;377166;377167;377168;377169;377170;377171;377172;377173;377174;377175;377176;377177;377178;377179;377180;377181;377182;377183;377184;377185;377186;377187;377188;377189;377190;377191;377192;377193;377194;377195;377196;377197 230608;230609;230610;230611;230612;230613;230614;230615;230616;230617;230618;230619;230620;230621;230622;230623;230624;230625;230626;230627;230628;230629;230630;230631;230632;230633;230634;230635;230636;230637;230638;230639;230640;230641;230642;230643;230644;230645;230646;230647;230648;230649;230650 230639 43 TPLAHYFQLLLTR Unmodified 1571.8824 0.88239805 752 P0ACV8 ymjA Uncharacterized protein YmjA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.086 49.817 3 1.7721E-05 24451 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 99.941 91.626 79841000 8369100 9376900 7359300 0 323090 0 8622100 8254000 8806200 0 0 0 4090300 5107300 0 0 0 0 7396500 6115100 6021200 0 0 0 20329 752 19690 377198;377199;377200;377201;377202;377203;377204;377205;377206;377207;377208;377209 230651;230652;230653;230654 230653 4 TPLIISGPAEDSSEMYK Unmodified 1836.8815 0.88153093 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 38.035 36.464 2;3 3.5108E-24 17883 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 260.81 259.17 790610000 51863000 40917000 44053000 2189900 1991500 1905300 56126000 56223000 52483000 23165000 22418000 19193000 54288000 49646000 47236000 18279000 10831000 10132000 63849000 62337000 58119000 14305000 15520000 13535000 20330 1057 19691 377210;377211;377212;377213;377214;377215;377216;377217;377218;377219;377220;377221;377222;377223;377224;377225;377226;377227;377228;377229;377230;377231;377232;377233;377234;377235;377236;377237;377238;377239;377240;377241;377242;377243;377244;377245;377246;377247;377248;377249;377250;377251 230655;230656;230657;230658;230659;230660;230661;230662;230663;230664;230665;230666;230667;230668;230669;230670;230671;230672;230673;230674;230675;230676 230664 21 TPLIISGPAEDSSEMYKR Unmodified 1992.9826 0.98264196 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 2 1 1 1 1 2 2 2 1 31.464 29.996 2;3 1.9065E-37 11785 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 209.89 206.47 902870000 28529000 25942000 15968000 7172100 4050900 9346400 27521000 29672000 32710000 108480000 77869000 59718000 21100000 21294000 22214000 65554000 50585000 56900000 40451000 35994000 39828000 44550000 39403000 38018000 20331 1057 19692 377252;377253;377254;377255;377256;377257;377258;377259;377260;377261;377262;377263;377264;377265;377266;377267;377268;377269;377270;377271;377272;377273;377274;377275;377276;377277;377278;377279;377280;377281;377282;377283 230677;230678;230679;230680;230681;230682;230683;230684;230685;230686;230687;230688;230689;230690;230691;230692;230693 230678 17 TPLSNFNVGAIAR Unmodified 1358.7306 0.73064844 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 38.666 36.97 2;3 7.8387E-24 18395 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 280.71 268.47 8555000000 96903000 80914000 89602000 0 0 0 1239000000 1300500000 1340300000 0 0 0 720060000 662620000 684950000 0 0 0 844040000 796060000 700080000 0 0 0 20332 654 19693 377284;377285;377286;377287;377288;377289;377290;377291;377292;377293;377294;377295;377296;377297;377298;377299;377300;377301;377302;377303;377304;377305 230694;230695;230696;230697;230698;230699;230700;230701;230702;230703;230704;230705;230706;230707;230708;230709;230710;230711;230712 230694 15 TPLVAWIDFGYCHKPNVTR Unmodified 2273.1415 0.14154264 1266 P25666 htrL Protein HtrL yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 42.373 40.377 4 0.11493 20083 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 30.969 28.207 65875000 0 0 0 0 0 0 8901500 9091300 0 4120500 4569600 2956400 4724000 0 3476900 0 0 0 9185000 9092500 9757400 0 0 0 20333 1266 19694 377306;377307;377308;377309;377310;377311;377312;377313;377314;377315 230713;230714 230713 0 TPLWLASLIR Unmodified 1168.6968 0.69682911 1529 P39353 yjhC Uncharacterized oxidoreductase YjhC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.149 52.71 2 1.6194E-06 26064 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 162.97 162.97 172370000 29384000 21871000 23648000 0 0 0 18273000 15226000 14505000 0 0 0 8435800 8268900 6903200 0 0 0 9387900 7662900 8800800 0 0 0 20334 1529 19695 377316;377317;377318;377319;377320;377321;377322;377323;377324;377325;377326;377327 230715;230716;230717;230718;230719 230716 4 TPMAESIAR Unmodified 974.48552 0.48551571 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 16.383 17.023 2 0.0001886 5938 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 127.56 113.79 132530000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 59464000 673380 0 0 0 72389000 0 0 0 0 20335 1471 19696 377328;377329;377330 230720 230720 1 TPNIQIIHAGLECGLFK Unmodified 1910.0084 0.0084032019 1109 P15288 pepD Cytosol non-specific dipeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 43.327 41.731 2;3 1.8755E-40 20786 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 307.87 296.34 9173400000 1033500000 964290000 830980000 1200100 890960 893700 893570000 1035500000 933970000 0 2105100 1047600 445950000 478620000 465450000 0 0 0 692530000 700720000 691220000 0 0 1019500 20336 1109 19697 377331;377332;377333;377334;377335;377336;377337;377338;377339;377340;377341;377342;377343;377344;377345;377346;377347;377348;377349;377350;377351;377352;377353;377354;377355;377356;377357;377358;377359;377360 230721;230722;230723;230724;230725;230726;230727;230728;230729;230730;230731;230732;230733;230734;230735;230736;230737;230738;230739;230740;230741;230742;230743;230744 230722 24 TPNLGKK Unmodified 756.44939 0.4493882 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 2 2 2 3 2 3 9.5911 9.8689 1;2 9.1728E-06 2014 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 152.39 134.01 28456000000 0 0 0 20773000 19683000 17670000 0 0 0 300410000 340060000 322070000 0 0 0 7464100000 3923900000 5035000000 0 0 0 3614100000 3525200000 3873500000 20337 383 19698 377361;377362;377363;377364;377365;377366;377367;377368;377369;377370;377371;377372;377373;377374;377375;377376;377377;377378;377379;377380;377381;377382 230745;230746;230747;230748;230749;230750;230751;230752;230753;230754;230755;230756;230757 230750 12 TPNPDILCNK Unmodified 1170.5703 0.57030797 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.191 22.01 2 3.1408E-06 9171 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 161.28 155.94 1072700000 147190000 119490000 118820000 2346500 2472200 1536000 67253000 81005000 0 0 0 0 67909000 78437000 63178000 1120800 0 571020 102600000 119500000 95688000 0 0 3629500 20338 1272 19699 377383;377384;377385;377386;377387;377388;377389;377390;377391;377392;377393;377394;377395;377396;377397;377398;377399;377400 230758;230759;230760;230761;230762;230763;230764;230765;230766;230767;230768 230762 11 TPNPGNTMSEQLGDK Unmodified 1587.7199 0.71988533 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.809 21.012 2 2.3455E-35 8624 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 249.28 248.08 427580000 9908500 10151000 7736300 3419000 2589900 2738700 32048000 33001000 28474000 7479300 7269300 7529800 31882000 23979000 24746000 0 0 0 60996000 53385000 57106000 8423000 6774800 7949300 20339 595 19700 377401;377402;377403;377404;377405;377406;377407;377408;377409;377410;377411;377412;377413;377414;377415;377416;377417;377418;377419;377420;377421 230769;230770;230771;230772;230773;230774;230775;230776;230777;230778;230779;230780;230781;230782;230783;230784;230785 230772 17 TPNQAQYIANILDHDITFGVGPAGTGK Unmodified 2797.4035 0.40350722 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.267 51.909 3 6.144E-53 25703 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.98 163.71 595900000 65767000 64202000 68274000 5933100 0 5638300 36863000 43023000 42845000 10765000 8078600 9096900 25208000 26077000 27176000 0 3244100 0 41089000 40507000 43487000 8541400 9146100 10939000 20340 530 19701 377422;377423;377424;377425;377426;377427;377428;377429;377430;377431;377432;377433;377434;377435;377436;377437;377438;377439;377440;377441;377442 230786;230787;230788;230789;230790;230791;230792;230793;230794;230795;230796;230797;230798;230799;230800;230801;230802 230789 17 TPPAAVLLK Unmodified 908.5695 0.56950333 350 P0A7J7 rplK 50S ribosomal protein L11 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.416 25.293 2 0.0019717 9261 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 86.794 76.715 10557000000 1177400000 1156800000 1194300000 53040000 58015000 53695000 532450000 511180000 454240000 103050000 85550000 90518000 540840000 555280000 559820000 81630000 60148000 61579000 978500000 926060000 1020700000 91514000 100390000 110380000 20341 350 19702 377443;377444;377445;377446;377447;377448;377449;377450;377451;377452;377453;377454;377455;377456;377457;377458;377459;377460;377461;377462;377463;377464;377465;377466 230803;230804;230805;230806;230807;230808;230809;230810;230811;230812;230813;230814;230815;230816;230817;230818;230819;230820;230821;230822;230823;230824;230825;230826;230827;230828;230829;230830;230831;230832 230808 30 TPPAAVLLKK Unmodified 1036.6645 0.66446635 350 P0A7J7 rplK 50S ribosomal protein L11 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 18.051 18.27 2 0.0024881 5195 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 81.548 77.435 86464000 0 0 0 11078000 8127600 9032300 0 0 0 5398800 6659400 6003400 0 0 0 8335000 0 0 0 0 0 10119000 12119000 9591500 20342 350 19703 377467;377468;377469;377470;377471;377472;377473;377474;377475;377476 230833;230834;230835;230836;230837;230838;230839;230840 230833 8 TPPCCDALIAAGVAR Unmodified 1570.7596 0.75958208 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.347 31.907 2 2.8318E-07 15336 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 130.69 130.45 197850000 21762000 19702000 15890000 0 0 0 20274000 17885000 14036000 0 0 0 13370000 10920000 10526000 0 0 0 15470000 19238000 18775000 0 0 0 20343 1262 19704 377477;377478;377479;377480;377481;377482;377483;377484;377485;377486;377487;377488 230841;230842;230843;230844;230845;230846;230847;230848;230849;230850;230851;230852 230843 11 TPPGAGDEIQLTDAIDMLIEK Unmodified 2226.109 0.10896469 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 55.278 53.809 2;3 1.2699E-62 26822 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 333.07 319.33 1843200000 129550000 141320000 130950000 0 800790 0 179610000 155100000 162410000 0 0 3087500 146850000 149320000 151360000 0 0 0 166210000 168420000 158210000 0 0 0 20344 876 19705 377489;377490;377491;377492;377493;377494;377495;377496;377497;377498;377499;377500;377501;377502;377503;377504;377505;377506;377507;377508;377509;377510;377511;377512;377513;377514 230853;230854;230855;230856;230857;230858;230859;230860;230861;230862;230863;230864;230865;230866;230867;230868;230869;230870;230871;230872;230873;230874 230863 22 TPPIDGIDHPK Unmodified 1188.6139 0.61388734 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS 1 16.061 16.808 3 0.1679 5792 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 13.589 6.2106 33271000 0 0 33271000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20345 1554 19706 377515 230875 230875 1 TPPVTLEAAR Unmodified 1053.5819 0.58185894 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.169 21.292 2 0.00063786 6863 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 91.867 54.308 238090000 15990000 15892000 17871000 2460000 2029400 1949500 16455000 21786000 17467000 3892500 5107800 2974200 8200000 7688800 8020100 15330000 6478400 6317300 19181000 19455000 20456000 3089000 0 0 20346 1083 19707 377516;377517;377518;377519;377520;377521;377522;377523;377524;377525;377526;377527;377528;377529;377530;377531;377532;377533;377534;377535;377536;377537 230876;230877;230878;230879;230880;230881;230882;230883;230884;230885;230886;230887 230878 11 TPQAASPLASWLSYLENLHSK Unmodified 2312.1801 0.18009622 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.843 53.398 3 5.2691E-22 26559 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 172 167.64 376210000 35098000 43543000 36696000 0 0 0 0 20971000 24608000 0 0 0 28983000 29932000 20515000 0 0 0 39548000 47100000 49218000 0 0 0 20347 177 19708 377538;377539;377540;377541;377542;377543;377544;377545;377546;377547;377548 230888;230889;230890;230891 230890 4 TPQQALDTAVER Unmodified 1327.6732 0.67319314 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 2 2 2 1 1 1 3 2 2 1 21.706 21.671 2;3 4.1476E-23 8759 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 227.36 224.38 16447000000 193710000 158940000 154930000 0 0 1771100 1344600000 1239100000 1271400000 1749600 1095500 0 1489700000 1405500000 1233900000 1499700 1060300 901260 2661900000 2742900000 2541500000 1157000 0 0 20348 993 19709 377549;377550;377551;377552;377553;377554;377555;377556;377557;377558;377559;377560;377561;377562;377563;377564;377565;377566;377567;377568;377569;377570;377571;377572;377573;377574;377575;377576;377577;377578;377579;377580 230892;230893;230894;230895;230896;230897;230898;230899;230900;230901;230902;230903;230904;230905;230906;230907;230908;230909;230910;230911;230912;230913;230914;230915;230916;230917;230918;230919;230920 230906 29 TPQTIGEELLDYR Unmodified 1533.7675 0.76748745 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.875 42.398 2 6.3531E-18 20500 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 221.09 187.21 450130000 38164000 27992000 26670000 0 0 0 36416000 39125000 36114000 7788500 4876700 4900900 21013000 19723000 20902000 3270100 2401500 3667900 45760000 52150000 43663000 5490000 4804400 5239400 20349 1197 19710 377581;377582;377583;377584;377585;377586;377587;377588;377589;377590;377591;377592;377593;377594;377595;377596;377597;377598;377599;377600;377601 230921;230922;230923;230924;230925;230926;230927;230928;230929;230930;230931;230932;230933;230934;230935;230936 230933 16 TPSDVLAVHLLLK Unmodified 1404.8341 0.83405088 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 42.599 40.852 2;3 9.9978E-09 20056 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 200.71 187.59 3120800000 336180000 333730000 311470000 0 1524100 0 335850000 303270000 253750000 2862800 0 0 194460000 158660000 174740000 0 0 0 236630000 237200000 240460000 0 0 0 20350 43 19711 377602;377603;377604;377605;377606;377607;377608;377609;377610;377611;377612;377613;377614;377615;377616;377617;377618;377619;377620;377621;377622;377623;377624;377625;377626;377627 230937;230938;230939;230940;230941;230942;230943;230944;230945;230946;230947;230948;230949;230950;230951;230952;230953;230954;230955;230956;230957;230958 230949 19 TPSEEYAK Unmodified 923.42363 0.42362696 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.062 11.766 2 0.001394 2945 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.14 91.589 69720000 36684000 0 0 0 0 0 0 33035000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20351 289 19712 377628;377629;377630;377631;377632;377633;377634;377635;377636 230959;230960;230961;230962;230963;230964;230965;230966;230967 230964 7 TPSFAHLQQIPAAIR Unmodified 1648.9049 0.90492441 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 34.063 32.503 2;3 7.4843E-36 15918 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 293.8 287.56 2858300000 99654000 94354000 83769000 24785000 27658000 27647000 208570000 211740000 170990000 107930000 98838000 82468000 177510000 160810000 167770000 12499000 15268000 14643000 284780000 333440000 261440000 65227000 63775000 62729000 20352 1426 19713 377637;377638;377639;377640;377641;377642;377643;377644;377645;377646;377647;377648;377649;377650;377651;377652;377653;377654;377655;377656;377657;377658;377659;377660;377661;377662;377663;377664;377665;377666;377667;377668;377669;377670;377671;377672;377673;377674;377675;377676;377677;377678;377679;377680;377681 230968;230969;230970;230971;230972;230973;230974;230975;230976;230977;230978;230979;230980;230981;230982;230983;230984;230985;230986;230987;230988;230989;230990;230991;230992;230993;230994;230995;230996;230997;230998;230999;231000;231001;231002;231003 230978 35 TPSPDAK Unmodified 714.35482 0.35481911 652 P0ABD8 accB Biotin carboxyl carrier protein of acetyl-CoA carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 2 5.7879 6.6741 2 0.0046873 1161 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 102.77 102.77 2059400000 175740000 0 0 0 0 0 264000000 266020000 232290000 0 0 0 233810000 232470000 233880000 0 0 0 0 218790000 202440000 0 0 0 20353 652 19714 377682;377683;377684;377685;377686;377687;377688;377689;377690;377691;377692 231004;231005;231006;231007;231008;231009;231010;231011;231012 231010 9 TPSQAAASAIGER Unmodified 1257.6313 0.63132832 220 P09980 rep ATP-dependent DNA helicase Rep yes yes 0 0 0 By MS/MS By MS/MS 1 1 16.309 17.132 2 7.8432E-07 5937 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.39 98.151 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20354 220 19715 377693;377694 231013;231014 231014 2 TPTISDEVK Unmodified 988.50769 0.50769094 476 P0A901 blc Outer membrane lipoprotein Blc yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 1 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 17.517 18.105 2 0.16071 6345 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 41.427 37.855 455870000 39380000 33455000 40401000 847180 816740 769940 47997000 46510000 43805000 0 1392300 1271900 24117000 25592000 24176000 0 0 0 40004000 42972000 40124000 1008100 1232700 0 20355 476 19716 377695;377696;377697;377698;377699;377700;377701;377702;377703;377704;377705;377706;377707;377708;377709;377710;377711;377712;377713;377714;377715;377716;377717;377718;377719;377720;377721;377722;377723;377724 231015;231016 231015 1 TPTSATR Unmodified 732.37662 0.37661719 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 8.3249 8.7829 2 0.00085673 1835 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 143.02 119.98 273680000 0 0 0 8969000 8870500 7673800 0 0 0 22096000 21339000 17411000 26831000 24159000 0 54959000 48256000 5039200 0 0 0 12036000 0 16039000 20356 648 19717 377725;377726;377727;377728;377729;377730;377731;377732;377733;377734;377735;377736;377737 231017;231018;231019;231020;231021;231022 231017 6 TPVFLGDDLTDESGFAVVNR Unmodified 2151.0484 0.048413341 1377 P31678 otsB Trehalose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.849 50.513 2 4.4712E-56 24867 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 280.23 275.15 117710000 25120000 20478000 16961000 1604200 1596500 1661800 9797500 8604200 7805500 2721400 3981600 2681300 0 3475800 0 0 0 0 4216100 0 7007100 0 0 0 20357 1377 19718 377738;377739;377740;377741;377742;377743;377744;377745;377746;377747;377748;377749;377750;377751;377752 231023;231024;231025 231024 3 TPVGNTAAICIYPR Unmodified 1531.7817 0.78169773 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 32.961 31.488 2;3 4.421E-45 14951 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 282.61 282.13 4758800000 247580000 204390000 182530000 0 949850 0 655740000 652980000 620460000 0 0 653520 395430000 378030000 372790000 0 0 0 338030000 352830000 356410000 0 0 0 20358 257 19719 377753;377754;377755;377756;377757;377758;377759;377760;377761;377762;377763;377764;377765;377766;377767;377768;377769;377770;377771;377772;377773;377774;377775;377776;377777;377778 231026;231027;231028;231029;231030;231031;231032;231033;231034;231035;231036;231037;231038;231039;231040;231041;231042;231043;231044;231045;231046;231047;231048;231049 231032 24 TPVLTSVK Unmodified 843.50657 0.50656873 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 16.857 17.533 2 0.00072492 6355 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 125.81 109.67 4369700000 399650000 408770000 331750000 0 0 0 476220000 462860000 486690000 482820 0 0 239330000 259540000 284000000 0 0 0 357210000 370260000 292900000 0 0 0 20359 31 19720 377779;377780;377781;377782;377783;377784;377785;377786;377787;377788;377789;377790;377791 231050;231051;231052;231053;231054;231055;231056;231057 231051 8 TPVMDALWANRPHTLIDASGLEVGLPDR Unmodified 3043.5549 0.55493926 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 50.895 49.737 3;4 1.3472E-107 24512 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 320.8 315.89 2772900000 170990000 158130000 130910000 1498400 0 0 302630000 291320000 303570000 0 0 0 234970000 219050000 205390000 0 4502800 4111800 252500000 271050000 222240000 0 0 0 20360 1487 19721 377792;377793;377794;377795;377796;377797;377798;377799;377800;377801;377802;377803;377804;377805;377806;377807;377808;377809;377810;377811;377812;377813;377814;377815;377816;377817;377818 231058;231059;231060;231061;231062;231063;231064;231065;231066;231067;231068;231069;231070;231071;231072;231073;231074;231075;231076;231077;231078;231079 231061 22 TPYVIAGLEYAR Unmodified 1351.7136 0.71360139 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 40.398 38.71 2 4.0789E-05 18146 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 133.23 129.3 160300000 17049000 0 12644000 0 0 0 15522000 17227000 17756000 0 0 0 13151000 11479000 12950000 0 0 0 15029000 14188000 13305000 0 0 0 20361 1867 19722 377819;377820;377821;377822;377823;377824;377825;377826;377827;377828;377829 231080;231081;231082;231083;231084;231085;231086;231087;231088;231089;231090 231088 10 TQANLSETLFKPR Unmodified 1503.8045 0.80454166 88 P04335 frsA Esterase FrsA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 26.7 25.659 3 1.6056E-05 11738 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 102.66 99.581 278030000 44795000 45838000 41202000 0 0 0 0 0 24449000 0 0 0 20356000 15843000 19647000 0 0 0 21155000 21912000 22834000 0 0 0 20362 88 19723 377830;377831;377832;377833;377834;377835;377836;377837;377838;377839 231091;231092;231093;231094;231095;231096;231097;231098;231099;231100 231092 10 TQDATHGNSLSHR Unmodified 1422.66 0.66000269 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 1 3 1 2 3 3 2 3 2 3 3 3 2 5 2 3 3 3 7.9266 8.487 2;3;4 2.2869E-41 1646 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 342.32 325.23 3596100000 435700000 434800000 470540000 36620000 27994000 37010000 28322000 44516000 39477000 92943000 95985000 92940000 205260000 160680000 193680000 67007000 102050000 85606000 234440000 204510000 213200000 94761000 77029000 121010000 20363 1621 19724 377840;377841;377842;377843;377844;377845;377846;377847;377848;377849;377850;377851;377852;377853;377854;377855;377856;377857;377858;377859;377860;377861;377862;377863;377864;377865;377866;377867;377868;377869;377870;377871;377872;377873;377874;377875;377876;377877;377878;377879;377880;377881;377882;377883;377884;377885;377886;377887;377888;377889;377890;377891;377892;377893;377894;377895;377896;377897;377898;377899 231101;231102;231103;231104;231105;231106;231107;231108;231109;231110;231111;231112;231113;231114;231115;231116;231117;231118;231119;231120;231121;231122;231123;231124;231125;231126;231127;231128;231129;231130;231131;231132;231133;231134;231135;231136;231137;231138;231139;231140;231141;231142;231143;231144;231145;231146;231147;231148 231137 48 TQEQQVVAACDK Unmodified 1375.6402 0.64017845 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.513 13.29 2 1.4139E-11 3826 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 181.44 168.49 1531000000 277030000 254180000 338930000 0 0 0 158160000 150700000 129840000 1888600 0 0 32591000 34573000 37655000 0 0 0 44760000 34383000 36310000 0 0 0 20364 401 19725 377900;377901;377902;377903;377904;377905;377906;377907;377908;377909;377910;377911;377912 231149;231150;231151;231152;231153;231154;231155;231156;231157 231157 9 TQEVANAASQVAAFPR Unmodified 1658.8376 0.8376327 247 P0A6I0 cmk Cytidylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 1 1 2 2 2 2 2 2 31.696 30.174 2;3 1.8435E-31 14212 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 300.7 294.04 751050000 63821000 60883000 54469000 2068000 846300 1935500 64158000 52721000 58139000 3549800 1909900 1753800 59025000 55026000 57031000 0 0 0 80365000 86419000 46929000 0 0 0 20365 247 19726 377913;377914;377915;377916;377917;377918;377919;377920;377921;377922;377923;377924;377925;377926;377927;377928;377929;377930;377931;377932;377933;377934;377935;377936;377937;377938;377939;377940;377941;377942;377943;377944;377945 231158;231159;231160;231161;231162;231163;231164;231165;231166;231167;231168;231169;231170;231171;231172;231173;231174;231175;231176;231177;231178;231179;231180;231181 231164 24 TQEVVAQEQK Unmodified 1158.5881 0.58806652 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.4 12.006 2 8.3536E-09 3116 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 186.16 182.79 653320000 23292000 24471000 19536000 7397000 8221800 8615300 34408000 44716000 37076000 31849000 24169000 29507000 44863000 44462000 40587000 8010100 7018500 6916700 58972000 44629000 56754000 16484000 17621000 13743000 20366 1854 19727 377946;377947;377948;377949;377950;377951;377952;377953;377954;377955;377956;377957;377958;377959;377960;377961;377962;377963;377964;377965;377966;377967;377968;377969 231182;231183;231184;231185;231186;231187;231188;231189 231182 8 TQEVVAQEQKDLR Unmodified 1542.8002 0.80018457 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 51.836 50.716 3 0.16153 18318 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 20.663 9.2234 36212000 0 0 0 5171900 4196600 3831600 0 0 0 5213000 4442800 4210700 0 0 0 1887800 0 1598600 0 0 0 2563900 3095000 0 20367 1854 19728 377970;377971;377972;377973;377974;377975;377976;377977;377978;377979 231190;231191 231190 2 TQFAPGK Unmodified 747.39154 0.39153897 637 P0AB83 nth Endonuclease III yes yes 0 0 0 By MS/MS By MS/MS 1 1 12.718 12.695 2 0.017277 2901 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 76.847 48.318 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20368 637 19729 377980;377981 231192;231193 231192 2 TQFASPVLHSLLDTDAYK Unmodified 2005.0157 0.015656649 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.576 43.061 3 4.8943E-10 20107 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 126.88 123.1 406750000 26753000 28723000 25165000 0 0 0 34644000 28916000 29903000 0 0 0 38173000 27879000 26962000 0 0 0 49153000 45768000 44715000 0 0 0 20369 1148 19730 377982;377983;377984;377985;377986;377987;377988;377989;377990;377991;377992;377993 231194;231195;231196;231197;231198;231199;231200 231199 7 TQFIIQNHSQK Unmodified 1342.6993 0.69934831 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.931 14.797 3 0.00060709 4740 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.525 75.292 204880000 23302000 22065000 21560000 0 0 0 13804000 12602000 9893000 0 0 0 13693000 11691000 14618000 0 0 0 17619000 21774000 22258000 0 0 0 20370 623 19731 377994;377995;377996;377997;377998;377999;378000;378001;378002;378003;378004;378005 231201;231202;231203;231204;231205;231206;231207;231208 231204 5 TQFMGPEGVANVSLSNIAGESAEGLLVTKPK Unmodified 3143.6173 0.61726475 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 51.128 49.889 3 8.7195E-18 24514 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.16 141.21 259860000 91238000 91969000 76652000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20371 774 19732 378006;378007;378008 231209;231210;231211 231209 3 TQGAAAFEGAVIAYEPVWAIGTGK Unmodified 2406.222 0.22196103 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 54.47 53.015 2;3 7.7757E-73 26188 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 293.35 280.8 4524600000 440500000 503160000 406640000 0 0 0 545970000 478700000 425180000 0 0 0 361880000 192940000 168610000 0 0 0 350180000 334620000 316180000 0 0 0 20372 399 19733 378009;378010;378011;378012;378013;378014;378015;378016;378017;378018;378019;378020;378021;378022;378023;378024;378025;378026;378027;378028;378029;378030 231212;231213;231214;231215;231216;231217;231218;231219;231220;231221;231222;231223;231224;231225;231226;231227;231228;231229;231230 231215 19 TQGETLWHISNVFTNEPALR Unmodified 2312.1549 0.1549441 1150 P18335 argD Acetylornithine/succinyldiaminopimelate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.463 45.247 3 3.6565E-05 22153 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 82.037 74.761 140390000 18166000 19927000 16335000 0 0 0 9056800 7876100 7319800 0 0 0 11412000 6543300 4168800 6337600 2102500 0 10791000 10461000 9896600 0 0 0 20373 1150 19734 378031;378032;378033;378034;378035;378036;378037;378038;378039;378040;378041;378042;378043;378044 231231;231232;231233;231234;231235 231233 4 TQGLGPANPIASNSTAEGK Unmodified 1811.9014 0.90135517 1484 P37665 yiaD Probable lipoprotein YiaD yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 23.53 22.898 2 1.7587E-09 9919 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.69 104.46 35431000 0 0 0 0 0 0 0 0 0 0 0 0 3268500 4595000 3043600 0 0 0 7599100 5802200 11122000 0 0 0 20374 1484 19735 378045;378046;378047;378048;378049;378050 231236;231237 231236 2 TQGTTGMFDSLPYR Unmodified 1572.7242 0.72424243 1531 P39358 yjhG Uncharacterized protein YjhG yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 37.927 36.487 2 1.8225E-05 17641 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.215 82.962 15295000 6351300 5282800 3661500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20375 1531 19736 378051;378052;378053 231238 231238 1 TQGVELEIR Unmodified 1043.5611 0.56112349 478 P0A905 slyB Outer membrane lipoprotein SlyB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.074 24.165 2 3.6612E-05 8978 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 152.47 121.24 615230000 32842000 30576000 28342000 0 0 0 39644000 37151000 36816000 98754000 0 0 37758000 47077000 35338000 21150000 15884000 17092000 44452000 45841000 43185000 3326500 0 0 20376 478 19737 378054;378055;378056;378057;378058;378059;378060;378061;378062;378063;378064;378065;378066;378067;378068;378069;378070 231239;231240;231241;231242;231243;231244;231245;231246;231247;231248;231249;231250;231251;231252;231253 231241 13 TQHPLLPGAIAEFNQYEFSR Unmodified 2317.1491 0.14913044 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.033 44.559 3 2.3794E-07 20812 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 105.96 104.85 334040000 28027000 30629000 27127000 0 0 0 19805000 20696000 18514000 0 0 0 28629000 21605000 26802000 0 0 0 33818000 41401000 36990000 0 0 0 20377 891 19738 378071;378072;378073;378074;378075;378076;378077;378078;378079;378080;378081;378082 231254;231255;231256;231257;231258;231259;231260 231259 7 TQIGSLSGGNQQK Unmodified 1316.6684 0.66844211 593 P0AAG8 mglA Galactose/methyl galactoside import ATP-binding protein MglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 13.287 14.374 2 4.0248E-05 3325 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 99.283 95.696 7513200 0 0 0 2817800 2095700 2599700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20378 593 19739 378083;378084;378085 231261;231262;231263 231263 3 TQIVNWLTR Unmodified 1129.6244 0.62439245 1805 P76014 dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.477 36.701 2 4.1275E-08 18033 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 195.06 178.86 1752800000 54193000 49432000 45050000 1024500 0 907980 222800000 236140000 206710000 4092000 3707000 3889000 166350000 175240000 158520000 1453900 0 0 146330000 142080000 130760000 1332700 1300400 1516200 20379 1805 19740 378086;378087;378088;378089;378090;378091;378092;378093;378094;378095;378096;378097;378098;378099;378100;378101;378102;378103;378104;378105;378106 231264;231265;231266;231267;231268;231269;231270;231271;231272;231273;231274;231275;231276 231267 12 TQKMVELLR Unmodified 1116.6325 0.6325143 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 1 By MS/MS By MS/MS 1 1 22.318 22.019 3 0.10125 9286 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 31.76 1.0735 66487000 0 0 0 0 0 0 32301000 0 34185000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20380 1958 19741 378107;378108 231277;231278 231277 0 TQLIDVIAEK Unmodified 1128.639 0.63903946 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 2 2 1 2 1 2 3 3 2 1 1 2 2 2 1 1 1 35.994 34.475 2;3 0.0005951 13192 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 92.838 80.048 34477000000 2424600000 2246900000 2277800000 48803000 43963000 49731000 2481600000 2538300000 2606900000 450980000 477400000 367760000 2213000000 2284800000 2193700000 1525800000 979920000 1009200000 2383000000 2579900000 2534200000 237450000 255260000 265790000 20381 726 19742 378109;378110;378111;378112;378113;378114;378115;378116;378117;378118;378119;378120;378121;378122;378123;378124;378125;378126;378127;378128;378129;378130;378131;378132;378133;378134;378135;378136;378137;378138;378139;378140;378141;378142;378143;378144;378145;378146 231279;231280;231281;231282;231283;231284;231285;231286;231287;231288;231289;231290;231291;231292;231293;231294;231295;231296;231297;231298;231299;231300;231301;231302;231303;231304;231305;231306;231307;231308;231309;231310 231293 32 TQLIDVIAEKAELSK Unmodified 1656.9298 0.92980175 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 3 2 2 3 3 2 40.741 39.193 2;3 2.8835E-11 14354 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 167.59 153.14 1072100000 0 0 0 14325000 19700000 23593000 0 0 0 66474000 54111000 56542000 0 0 0 232420000 177990000 266640000 0 0 0 57620000 54597000 48060000 20382 726 19743 378147;378148;378149;378150;378151;378152;378153;378154;378155;378156;378157;378158;378159;378160;378161;378162;378163;378164;378165;378166;378167;378168;378169;378170;378171;378172;378173;378174 231311;231312;231313;231314;231315;231316;231317;231318;231319;231320;231321;231322;231323;231324;231325;231326;231327;231328;231329 231312 19 TQLINLFEVADGK Unmodified 1446.7718 0.77184455 269 P0A6P7 engB Probable GTP-binding protein EngB yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 51.117 49.823 2 0.00019621 24290 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 86.313 75.483 112710000 22522000 19481000 0 0 0 0 16493000 17273000 14727000 0 0 0 0 12153000 10065000 0 0 0 0 0 0 0 0 0 20383 269 19744 378175;378176;378177;378178;378179;378180;378181 231330;231331 231331 2 TQLINLFEVADGKR Unmodified 1602.873 0.87295558 269 P0A6P7 engB Probable GTP-binding protein EngB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.004 41.405 3 1.7088E-08 16614 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 147.7 141.11 263900000 22870000 22478000 23616000 2050600 1690900 1700100 16616000 13248000 14171000 14502000 15516000 14146000 9736100 7625500 8182400 0 4584500 4208100 18074000 12786000 15069000 6368600 7366600 7291700 20384 269 19745 378182;378183;378184;378185;378186;378187;378188;378189;378190;378191;378192;378193;378194;378195;378196;378197;378198;378199;378200;378201;378202;378203;378204 231332;231333;231334;231335;231336;231337;231338;231339;231340;231341;231342;231343;231344;231345;231346 231336 10 TQLNEAEANVTVAK Unmodified 1486.7627 0.76273643 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.209 21.329 2 8.7759E-11 6872 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 161.99 118.71 125740000 9275900 8450500 7569400 3218900 3105400 2370300 15716000 16703000 22033000 7898100 11898000 13682000 2005800 1813200 0 0 0 0 0 0 0 0 0 0 20385 1477 19746 378205;378206;378207;378208;378209;378210;378211;378212;378213;378214;378215;378216;378217;378218 231347;231348;231349;231350;231351;231352;231353;231354;231355 231349 9 TQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVK Unmodified 3374.7973 0.7973376 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 54.258 52.819 3;4 2.0346E-13 26008 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.49 114.96 15291000000 2581100000 2337300000 2096600000 0 5450600 2862900 746590000 766740000 798510000 0 0 0 716400000 700810000 689320000 0 0 0 1326800000 1299300000 1223300000 0 0 0 20386 1642 19747 378219;378220;378221;378222;378223;378224;378225;378226;378227;378228;378229;378230;378231;378232;378233;378234;378235;378236;378237;378238;378239;378240;378241;378242;378243;378244 231356;231357;231358;231359;231360;231361;231362;231363;231364;231365;231366;231367;231368;231369;231370;231371;231372;231373;231374 231368 19 TQLQDAVPMTLGQEFR Oxidation (M) 1848.904 0.90399771 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 41.079 39.101 2 2.1664E-05 19526 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.552 72.02 16300000 0 0 0 0 0 0 4736000 4528200 5643000 0 0 0 1393000 0 0 0 0 0 0 0 0 0 0 0 20387 697 19748 378245;378246;378247;378248 231375 231375 374 1 TQLQDAVPMTLGQEFR Unmodified 1832.9091 0.90908309 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.53 44.09 2;3 1.6868E-18 20695 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 222.79 211.89 4486200000 309690000 303030000 242610000 0 0 0 480520000 478390000 452580000 0 0 0 466450000 457410000 416900000 0 0 0 296960000 301760000 279870000 0 0 0 20388 697 19748 378249;378250;378251;378252;378253;378254;378255;378256;378257;378258;378259;378260;378261;378262;378263;378264;378265;378266;378267;378268;378269;378270;378271;378272 231376;231377;231378;231379;231380;231381;231382;231383;231384;231385;231386;231387;231388;231389;231390;231391;231392;231393;231394;231395;231396;231397;231398;231399 231394 24 TQLVEQK Unmodified 844.46543 0.46543219 1509 P39172 znuA High-affinity zinc uptake system protein ZnuA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.398 12.23 2 0.0013949 3159 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 130.77 102.66 221720000 17645000 20305000 12037000 0 0 0 21773000 17623000 18713000 0 0 0 20562000 15018000 16336000 0 0 0 18951000 20000000 22760000 0 0 0 20389 1509 19749 378273;378274;378275;378276;378277;378278;378279;378280;378281;378282;378283;378284 231400;231401;231402 231401 3 TQMSAAHTPEQITR Unmodified 1569.7569 0.75693954 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 13.555 14.373 2;3 2.3145E-14 4413 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 216.97 193.12 3203700000 301010000 282540000 191650000 1290500 0 1225500 324250000 284650000 286360000 973860 0 775540 249490000 266000000 224400000 0 0 0 297910000 241200000 249990000 0 0 0 20390 635 19750 378285;378286;378287;378288;378289;378290;378291;378292;378293;378294;378295;378296;378297;378298;378299;378300;378301;378302;378303;378304;378305;378306;378307;378308;378309;378310;378311;378312 231403;231404;231405;231406;231407;231408;231409;231410;231411;231412;231413;231414;231415;231416;231417;231418;231419 231409 17 TQNLSVNVGGR Unmodified 1143.5996 0.59963426 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.031 18.411 2 1.3111E-07 6742 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 170.95 157.99 750000000 21810000 19157000 20086000 2192500 3048000 2557600 112490000 122310000 115700000 13762000 12078000 12099000 0 42660000 42423000 7013400 6906500 6402700 57283000 61299000 55289000 4727300 4477600 4234400 20391 1916 19751 378313;378314;378315;378316;378317;378318;378319;378320;378321;378322;378323;378324;378325;378326;378327;378328;378329;378330;378331;378332;378333;378334;378335 231420;231421;231422;231423;231424;231425;231426;231427;231428;231429;231430;231431;231432;231433;231434;231435 231434 16 TQNYQTR Unmodified 909.43044 0.43044367 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 1 1 1 1 6.9679 7.8825 2 0.0073613 1215 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.626 91.626 94787000 0 0 0 0 0 0 30610000 25414000 26818000 0 0 0 2706900 2558600 2555300 0 0 0 1251600 1290200 1583100 0 0 0 20392 1861 19752 378336;378337;378338;378339;378340;378341;378342;378343;378344;378345 231436;231437;231438;231439;231440;231441 231437 6 TQPDYDYQDGK Unmodified 1328.5521 0.55207495 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 14.171 14.972 2 4.1046E-05 4846 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 131.11 131.11 166650000 12943000 9031200 10350000 0 335260 0 15041000 16474000 14072000 0 0 0 16412000 15482000 14113000 0 0 0 14563000 14032000 13800000 0 0 0 20393 803 19753 378346;378347;378348;378349;378350;378351;378352;378353;378354;378355;378356;378357;378358 231442;231443;231444;231445;231446;231447;231448;231449;231450;231451;231452;231453 231444 12 TQPGAWGR Unmodified 871.43005 0.43004974 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.93 14.64 2 0.005035 4564 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 87.284 58.418 897790000 51242000 43833000 41137000 2455700 0 2672800 83069000 80721000 78988000 2621700 2420000 2753700 78495000 74958000 70442000 0 0 0 92508000 100260000 87445000 0 1772000 0 20394 583 19754 378359;378360;378361;378362;378363;378364;378365;378366;378367;378368;378369;378370;378371;378372;378373;378374;378375;378376 231454;231455;231456;231457;231458;231459;231460;231461;231462;231463;231464 231456 11 TQPLYDTQVSVSHTTR Unmodified 1831.9064 0.90644055 1622 P60546 gmk Guanylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 2 2 2 2 2 2 2 20.193 20.577 2;3 1.6132E-30 8176 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 227.57 222.08 1323400000 82529000 95337000 80883000 893840 0 806710 114700000 97028000 91693000 0 0 0 124210000 114270000 104660000 0 0 0 138240000 134400000 143760000 0 0 0 20395 1622 19755 378377;378378;378379;378380;378381;378382;378383;378384;378385;378386;378387;378388;378389;378390;378391;378392;378393;378394;378395;378396;378397;378398;378399;378400;378401 231465;231466;231467;231468;231469;231470;231471;231472;231473;231474;231475;231476;231477;231478;231479;231480;231481;231482;231483;231484;231485;231486;231487 231472 23 TQQEEAVITAVR Unmodified 1343.7045 0.70449327 687 P0ABZ1 fliG Flagellar motor switch protein FliG yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 23.485 22.858 2 6.9645E-05 9787 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.52 88.225 31648000 9852300 10327000 5486400 2367600 1597000 2018000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20396 687 19756 378402;378403;378404;378405;378406;378407 231488 231488 1 TQQEIPNAETMK Unmodified 1388.6606 0.66057954 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 3 1 1 1 3 3 3 1 1 1 3 3 3 1 1 1 3 3 3 1 1 1 18.909 19.34 2;3 1.2802E-17 7539 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.31 219.72 14792000000 449830000 449160000 406650000 4766700 4749700 4618800 2248100000 2601200000 2315900000 10723000 6317700 8177700 1124200000 1143400000 968550000 3022900 3320300 3472900 1061200000 1008100000 960300000 1665200 2211100 2802800 20397 1079 19757 378408;378409;378410;378411;378412;378413;378414;378415;378416;378417;378418;378419;378420;378421;378422;378423;378424;378425;378426;378427;378428;378429;378430;378431;378432;378433;378434;378435;378436;378437;378438;378439;378440;378441;378442;378443;378444;378445;378446;378447;378448;378449;378450;378451;378452;378453;378454 231489;231490;231491;231492;231493;231494;231495;231496;231497;231498;231499;231500;231501;231502;231503;231504;231505;231506;231507;231508;231509;231510;231511;231512;231513;231514;231515;231516;231517;231518;231519;231520;231521;231522 231493 28 TQQEIPNAETMK Oxidation (M) 1404.6555 0.65549416 1079 P12758 udp Uridine phosphorylase yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 3 2 2 1 1 13.492 14.355 2 4.3425E-06 4403 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 135.55 130.35 296930000 9031600 5750800 7038900 0 0 0 50420000 70772000 53410000 0 0 0 17831000 20843000 16633000 0 0 0 23300000 7833000 14067000 0 0 0 20398 1079 19757 378455;378456;378457;378458;378459;378460;378461;378462;378463;378464;378465;378466;378467;378468;378469;378470;378471;378472;378473;378474;378475 231523;231524;231525;231526;231527;231528;231529;231530;231531;231532;231533;231534;231535 231525 482 12 TQQESLQK Unmodified 960.48762 0.4876242 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.335 11.12 2 0.0021725 2551 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.71 69.198 988550000 215850000 211620000 153810000 0 349610 0 0 0 0 0 0 0 51996000 0 0 0 0 0 118360000 121490000 111990000 3066600 0 0 20399 65 19758 378476;378477;378478;378479;378480;378481;378482;378483;378484 231536;231537;231538 231537 3 TQQIEELQK Unmodified 1115.5823 0.58225287 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 14.935 15.61 2 0.00033848 5127 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.5 80.576 15504000000 4652600000 4786800000 4963800000 0 0 0 1100800000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20400 517 19759 378485;378486;378487;378488;378489 231539;231540;231541;231542;231543;231544;231545;231546;231547;231548;231549 231543 11 TQQITLIK Acetyl (Protein N-term) 985.5808 0.5807963 1457 P37128 nudK GDP-mannose pyrophosphatase NudK yes yes 1 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 1 1 1 3 2 2 1 1 2 2 3 1 1 1 3 2 2 2 1 2 26.244 25.185 1;2 0.0023607 11349 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 91.9 29.354 2350100000 367190000 404870000 80833000 3124000 3094900 3105700 133050000 29532000 120220000 0 5767700 5186100 39615000 157790000 178830000 4205500 2600000 2932200 295530000 248130000 242800000 7774000 5604600 8278800 20401 1457 19760 378490;378491;378492;378493;378494;378495;378496;378497;378498;378499;378500;378501;378502;378503;378504;378505;378506;378507;378508;378509;378510;378511;378512;378513;378514;378515;378516;378517;378518;378519;378520;378521;378522;378523;378524;378525;378526;378527;378528;378529;378530 231550;231551;231552;231553;231554;231555;231556;231557;231558;231559;231560;231561;231562;231563;231564;231565;231566;231567 231559 17 TQQITLIK Unmodified 943.57023 0.57023162 1457 P37128 nudK GDP-mannose pyrophosphatase NudK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.804 22.258 2 0.062924 9886 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 57.047 43.54 277590000 23689000 23057000 22217000 0 0 0 25223000 22539000 26862000 0 0 0 22547000 21483000 21600000 0 0 0 22213000 19863000 26297000 0 0 0 20402 1457 19760 378531;378532;378533;378534;378535;378536;378537;378538;378539;378540;378541;378542 231568;231569;231570 231568 3 TQQLQMGFR Unmodified 1107.5495 0.54951295 1612 P55135 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.757 23.723 2 0.00082064 10295 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 100.39 93.751 45334000 4622100 6714700 4055500 0 0 0 2860300 3217200 3111200 0 0 2165300 2647300 0 2731600 0 0 0 4734000 4453000 4021800 0 0 0 20403 1612 19761 378543;378544;378545;378546;378547;378548;378549;378550;378551;378552;378553;378554 231571 231571 1 TQRPSTCNTVETLLVNK Unmodified 1960.0048 0.004774387 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.295 26.147 2;3 1.1435E-18 11697 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 230.14 214.38 1175500000 144190000 138270000 135740000 0 0 0 105180000 102650000 103630000 0 0 0 71494000 70133000 69268000 0 0 0 83284000 83898000 67751000 0 0 0 20404 148 19762 378555;378556;378557;378558;378559;378560;378561;378562;378563;378564;378565;378566;378567;378568;378569;378570;378571;378572;378573;378574;378575;378576;378577;378578 231572;231573;231574;231575;231576;231577;231578;231579;231580;231581;231582;231583;231584;231585;231586;231587;231588;231589;231590;231591;231592;231593;231594;231595 231589 24 TQSLFANAFGYPATHTIQAPGR Unmodified 2347.1709 0.17092851 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.247 39.582 3 5.0727E-22 19696 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 170.91 167.2 718510000 105820000 95499000 88125000 0 0 0 77827000 70005000 85849000 0 0 0 26510000 22117000 24876000 0 0 0 37126000 42974000 41783000 0 0 0 20405 278 19763 378579;378580;378581;378582;378583;378584;378585;378586;378587;378588;378589;378590 231596;231597;231598;231599;231600;231601;231602;231603;231604;231605;231606 231597 11 TQSWQEAAWWSEVFSYAEDR Unmodified 2475.0768 0.076753356 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 2 2 1 2 2 2 2 2 2 55.323 53.855 2;3 1.0246E-45 26665 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 300.07 300.07 617970000 141160000 130310000 135870000 0 0 0 38599000 43309000 32954000 0 0 0 15969000 14382000 16745000 0 0 0 20991000 15272000 12410000 0 0 0 20406 195 19764 378591;378592;378593;378594;378595;378596;378597;378598;378599;378600;378601;378602;378603;378604;378605;378606;378607;378608;378609;378610;378611;378612;378613 231607;231608;231609;231610;231611;231612;231613;231614 231611 8 TQTAERPSTTRPAR Unmodified 1570.8176 0.81756596 1072 P11557 damX Cell division protein DamX yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.758 9.4825 3 0.011863 2534 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 44.511 31.53 269530000 20964000 15610000 13775000 2679600 3610100 2449300 12600000 12761000 11211000 11661000 9338200 17704000 21802000 13336000 12577000 0 0 0 27329000 22312000 22797000 5920200 9099500 0 20407 1072 19765 378614;378615;378616;378617;378618;378619;378620;378621;378622;378623;378624;378625;378626;378627;378628;378629;378630;378631;378632;378633 231615;231616 231616 2 TQTAPVATPQELADYDAIIFGTPTR Unmodified 2675.3443 0.34426101 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 1 2 2 54.344 52.894 2;3 6.5672E-31 26172 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 250.08 247.63 6666400000 882010000 833330000 708070000 0 0 0 1131700000 1008400000 895010000 0 0 8419800 261360000 232970000 218120000 0 0 0 107230000 180930000 198860000 0 0 0 20408 428 19766 378634;378635;378636;378637;378638;378639;378640;378641;378642;378643;378644;378645;378646;378647;378648;378649;378650;378651;378652;378653;378654;378655;378656;378657 231617;231618;231619;231620;231621;231622;231623 231618 7 TQTFIPGK Unmodified 890.48617 0.48616764 1782 P75838 ycaO Ribosomal protein S12 methylthiotransferase accessory factor YcaO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 18.771 19.289 2 0.012394 7577 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 75.189 36.887 404600000 27585000 0 0 0 0 0 66132000 64662000 57951000 0 0 0 73342000 57714000 57211000 0 0 0 0 0 0 0 0 0 20409 1782 19767 378658;378659;378660;378661;378662;378663;378664 231624;231625;231626;231627;231628;231629;231630 231624 6 TQTGALIMIFDSADGAADAAPAQAEEK Unmodified 2691.2698 0.26977544 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 5 5 6 3 4 5 3 3 3 4 4 5 2 1 1 7 4 4 5 6 5 53.034 51.736 2;3;4 3.9457E-66 25559 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 319.67 317.34 10463000000 602620000 595060000 449200000 693420000 674140000 713670000 481620000 523720000 489460000 93766000 94425000 73283000 394650000 329890000 339550000 20638000 16923000 20796000 623470000 594360000 573520000 608790000 709560000 746380000 20410 133 19768 378665;378666;378667;378668;378669;378670;378671;378672;378673;378674;378675;378676;378677;378678;378679;378680;378681;378682;378683;378684;378685;378686;378687;378688;378689;378690;378691;378692;378693;378694;378695;378696;378697;378698;378699;378700;378701;378702;378703;378704;378705;378706;378707;378708;378709;378710;378711;378712;378713;378714;378715;378716;378717;378718;378719;378720;378721;378722;378723;378724;378725;378726;378727;378728;378729;378730;378731;378732;378733;378734;378735;378736;378737;378738;378739;378740;378741;378742;378743;378744;378745;378746;378747;378748;378749;378750;378751;378752;378753;378754;378755;378756;378757;378758;378759;378760;378761;378762 231631;231632;231633;231634;231635;231636;231637;231638;231639;231640;231641;231642;231643;231644;231645;231646;231647;231648;231649;231650;231651;231652;231653;231654;231655;231656;231657;231658;231659;231660;231661;231662;231663;231664;231665;231666;231667;231668;231669;231670;231671;231672;231673;231674;231675;231676;231677;231678;231679;231680;231681;231682;231683;231684;231685;231686;231687;231688;231689;231690;231691;231692;231693;231694;231695;231696;231697;231698;231699;231700;231701;231702;231703;231704 231643 73 TQTGALIMIFDSADGAADAAPAQAEEK Oxidation (M) 2707.2647 0.26469006 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 1 2 1 1 1 1 1 2 2 2 2 2 2 2 50.501 49.124 3 4.4789E-11 17509 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 126.47 119.67 236420000 13555000 0 11074000 19540000 21072000 18802000 6580800 13590000 7813100 4702100 0 1567500 4715400 6234800 8340300 0 0 0 13170000 13167000 11332000 21508000 20451000 19208000 20411 133 19768 378763;378764;378765;378766;378767;378768;378769;378770;378771;378772;378773;378774;378775;378776;378777;378778;378779;378780;378781;378782;378783;378784;378785;378786;378787;378788;378789;378790;378791;378792;378793;378794 231705;231706;231707;231708;231709;231710;231711;231712 231711 48 8 TQTGALIMIFDSADGAADAAPAQAEEKK Unmodified 2819.3647 0.36473846 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 6 7 6 2 2 1 2 2 2 1 1 1 1 1 1 2 1 2 6 5 7 47.495 46.028 2;3;4;5 4.2252E-41 18760 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 205.65 202.84 7224000000 43259000 27059000 34942000 944350000 1097900000 982280000 40105000 33984000 28962000 127070000 138580000 128400000 18783000 21664000 20058000 15774000 25580000 18225000 51328000 44534000 48327000 1068800000 1197900000 1066100000 20412 133 19769 378795;378796;378797;378798;378799;378800;378801;378802;378803;378804;378805;378806;378807;378808;378809;378810;378811;378812;378813;378814;378815;378816;378817;378818;378819;378820;378821;378822;378823;378824;378825;378826;378827;378828;378829;378830;378831;378832;378833;378834;378835;378836;378837;378838;378839;378840;378841;378842;378843;378844;378845;378846;378847;378848;378849;378850;378851;378852;378853;378854;378855;378856;378857;378858 231713;231714;231715;231716;231717;231718;231719;231720;231721;231722;231723;231724;231725;231726;231727;231728;231729;231730;231731;231732;231733;231734;231735;231736;231737;231738;231739;231740;231741;231742;231743;231744;231745;231746;231747;231748;231749;231750;231751;231752;231753;231754;231755;231756;231757;231758;231759;231760;231761;231762;231763;231764;231765;231766;231767;231768;231769;231770;231771;231772 231717 60 TQTGALIMIFDSADGAADAAPAQAEEKK Oxidation (M) 2835.3597 0.35965308 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 44.427 42.634 3 4.8937E-16 15015 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 143.19 140.78 113080000 0 0 0 17266000 17063000 13479000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14282000 25822000 25167000 20413 133 19769 378859;378860;378861;378862;378863;378864;378865;378866;378867;378868;378869;378870 231773;231774;231775;231776;231777;231778;231779;231780;231781;231782;231783 231778 48 11 TQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAAAAAK Unmodified 3980.979 0.97896015 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 2 2 2 4 3 4 43.391 41.402 3;4;5;6 2.8863E-37 16288 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 180.31 178.99 1396300000 0 0 0 235450000 303210000 193470000 0 0 0 17531000 15531000 15932000 0 0 0 0 0 0 0 0 0 186550000 211480000 217150000 20414 133 19770 378871;378872;378873;378874;378875;378876;378877;378878;378879;378880;378881;378882;378883;378884;378885;378886;378887;378888;378889;378890;378891;378892;378893;378894;378895;378896;378897;378898;378899 231784;231785;231786;231787;231788;231789;231790;231791;231792;231793;231794;231795;231796;231797;231798;231799;231800;231801;231802;231803;231804 231787 21 TQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAAAAAK Oxidation (M) 3996.9739 0.97387477 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 2 By MS/MS By matching 1 1 40.564 38.835 4 0.0018426 13719 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 43.951 43.576 5656500 0 0 0 3212600 2443900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20415 133 19770 378900;378901 231805 231805 48 1 TQTGELSIHCTELR Unmodified 1643.7937 0.79371898 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 3 21.104 21.319 2;3 6.2474E-35 8346 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 312.95 304.21 5300700000 397790000 369390000 77808000 1822900 1673400 1647800 814810000 858340000 900870000 2110100 3134400 3066200 331580000 291890000 318510000 0 0 0 315570000 318830000 291840000 0 0 0 20416 449 19771 378902;378903;378904;378905;378906;378907;378908;378909;378910;378911;378912;378913;378914;378915;378916;378917;378918;378919;378920;378921;378922;378923;378924;378925;378926;378927;378928;378929;378930;378931;378932 231806;231807;231808;231809;231810;231811;231812;231813;231814;231815;231816;231817;231818;231819;231820;231821;231822;231823;231824;231825;231826;231827;231828;231829;231830;231831 231823 26 TQTLSQLENSGAFIER Unmodified 1792.8955 0.89554151 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 2 2 2 37.852 36.226 2;3 2.935E-103 17922 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 362.96 352.05 2602600000 199640000 182020000 173710000 10442000 9519200 10714000 244250000 262700000 234440000 7686000 8356000 9780900 176730000 153320000 162870000 4276500 1356000 3958300 238530000 231290000 247670000 8790400 9298700 11257000 20417 1409 19772 378933;378934;378935;378936;378937;378938;378939;378940;378941;378942;378943;378944;378945;378946;378947;378948;378949;378950;378951;378952;378953;378954;378955;378956;378957;378958;378959;378960;378961;378962;378963;378964;378965;378966;378967;378968;378969;378970;378971;378972;378973;378974;378975;378976;378977;378978 231832;231833;231834;231835;231836;231837;231838;231839;231840;231841;231842;231843;231844;231845;231846;231847;231848;231849;231850;231851;231852;231853;231854;231855;231856;231857;231858;231859;231860;231861;231862;231863;231864;231865 231836 34 TQTQLQQQHLENQINNNSQR Unmodified 2421.1745 0.17451034 818 P0ADX7 yhhA Uncharacterized protein YhhA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.216 17.013 3 2.255E-56 6018 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 278.74 274.29 358040000 77462000 74577000 94656000 1417200 1445300 1160700 25051000 24621000 22532000 0 0 1639900 7409000 6576800 7520800 0 0 0 3688400 0 8287400 0 0 0 20418 818 19773 378979;378980;378981;378982;378983;378984;378985;378986;378987;378988;378989;378990;378991;378992;378993 231866;231867;231868;231869;231870;231871;231872;231873 231867 8 TQTSGVQIR Unmodified 988.53016 0.53015772 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.472 13.273 2 2.1526E-11 3824 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 215.1 181.55 3022100000 261300000 234480000 272230000 3519100 2563600 2576100 229530000 216530000 215070000 0 11291000 10552000 230050000 247830000 243090000 0 0 0 305210000 300830000 235510000 0 0 0 20419 183 19774 378994;378995;378996;378997;378998;378999;379000;379001;379002;379003;379004;379005;379006;379007;379008;379009;379010 231874;231875;231876;231877;231878;231879;231880 231877 7 TQVIKPLTLDVADGEFIVMVGPSGCGK Unmodified 2830.4609 0.46088745 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.526 51.276 3 4.1737E-11 24807 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 126.99 124.68 584170000 3336400 0 0 1643200 1949700 0 25531000 24306000 20917000 27104000 28346000 28499000 34014000 30490000 22346000 3732200 0 0 75064000 77705000 88118000 35323000 28251000 27494000 20420 1064 19775 379011;379012;379013;379014;379015;379016;379017;379018;379019;379020;379021;379022;379023;379024;379025;379026;379027;379028;379029 231881;231882;231883;231884;231885;231886;231887;231888;231889;231890;231891;231892;231893;231894 231891 14 TQVMTMGGMVEQQLSDAITAMHNQDSDLAK Unmodified 3249.4774 0.4774185 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 1 1 1 1 2 2 2 1 2 2 2 1 1 54.46 53.043 3;4 3.5733E-68 26262 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 270.18 269.8 1968800000 20745000 26700000 41372000 1408200 1578100 1416600 103950000 102520000 93258000 0 11935000 27256000 234450000 232860000 111380000 0 0 0 317840000 337650000 285080000 0 9020500 8345000 20421 531 19776 379030;379031;379032;379033;379034;379035;379036;379037;379038;379039;379040;379041;379042;379043;379044;379045;379046;379047;379048;379049;379050;379051;379052;379053;379054;379055 231895;231896;231897;231898;231899;231900;231901;231902;231903;231904;231905 231896 11 TQVMTMGGMVEQQLSDAITAMHNQDSDLAKR Unmodified 3405.5785 0.57852953 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.562 51.548 4 6.4521E-25 20677 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 175.46 165.23 256460000 0 0 0 4376400 3938500 4358000 0 0 0 41745000 46659000 50058000 0 0 0 10159000 14486000 10893000 0 0 0 23754000 20551000 25486000 20422 531 19777 379056;379057;379058;379059;379060;379061;379062;379063;379064;379065;379066;379067 231906;231907;231908;231909;231910;231911;231912;231913 231909 8 TQVNNAVSVDEK Unmodified 1302.6416 0.64155866 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.801 14.412 2 2.411E-08 4559 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 198.25 166.75 1587600000 38216000 36274000 29039000 2149600 1956800 1508600 234890000 224250000 218720000 31188000 21422000 17718000 116020000 132180000 115980000 8805900 7077100 7088600 109360000 103950000 117120000 7208100 5492700 0 20423 1745 19778 379068;379069;379070;379071;379072;379073;379074;379075;379076;379077;379078;379079;379080;379081;379082;379083;379084;379085;379086;379087;379088;379089;379090;379091 231914;231915;231916;231917;231918;231919;231920;231921;231922;231923;231924;231925;231926;231927;231928;231929;231930;231931 231918 18 TQVNNAVSVDEKDIEAFK Unmodified 2005.9956 0.99564949 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 2 2 2 1 2 2 2 1 2 1 1 1 2 2 2 1 1 1 31.409 29.957 2;3 1.3313E-09 14380 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.28 109.75 680750000 11429000 10378000 11084000 0 0 2480400 86743000 74837000 80548000 27720000 25872000 19277000 36329000 35421000 41857000 22285000 19085000 14093000 50723000 46344000 48172000 5868700 4158300 6048600 20424 1745 19779 379092;379093;379094;379095;379096;379097;379098;379099;379100;379101;379102;379103;379104;379105;379106;379107;379108;379109;379110;379111;379112;379113;379114;379115;379116;379117;379118;379119;379120;379121;379122;379123 231932;231933;231934;231935;231936;231937;231938;231939;231940;231941;231942;231943 231938 12 TQVNNAVSVDEKDIEAFKK Unmodified 2134.0906 0.090612506 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 25.984 24.847 3;4 1.0778E-17 8751 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 165.8 163.47 1520000000 20277000 20042000 23471000 24709000 21045000 24664000 93227000 106660000 96018000 212850000 168830000 171130000 39825000 42590000 35159000 47474000 15650000 22549000 49214000 52624000 37435000 65935000 61792000 66817000 20425 1745 19780 379124;379125;379126;379127;379128;379129;379130;379131;379132;379133;379134;379135;379136;379137;379138;379139;379140;379141;379142;379143;379144;379145;379146;379147;379148;379149;379150;379151;379152;379153;379154;379155;379156;379157;379158;379159;379160;379161;379162;379163;379164;379165;379166;379167;379168;379169 231944;231945;231946;231947;231948;231949;231950;231951;231952;231953;231954;231955;231956;231957;231958;231959;231960;231961;231962;231963;231964;231965;231966;231967;231968;231969;231970;231971;231972;231973;231974;231975;231976;231977;231978;231979 231963 36 TQVVVLGAGPAGYSAAFR Unmodified 1762.9366 0.93661847 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 3 5 5 2 2 3 3 2 3 2 2 2 2 2 2 3 3 4 3 3 3 42.791 41.145 2;3 3.2472E-55 19767 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 278.93 262.56 22096000000 686560000 635950000 631500000 2287000000 2267300000 2210600000 788920000 781640000 717860000 253710000 238950000 226870000 445010000 457910000 412580000 102160000 95065000 79391000 905440000 864360000 898740000 2091100000 2142000000 1875000000 20426 542 19781 379170;379171;379172;379173;379174;379175;379176;379177;379178;379179;379180;379181;379182;379183;379184;379185;379186;379187;379188;379189;379190;379191;379192;379193;379194;379195;379196;379197;379198;379199;379200;379201;379202;379203;379204;379205;379206;379207;379208;379209;379210;379211;379212;379213;379214;379215;379216;379217;379218;379219;379220;379221;379222;379223;379224;379225;379226;379227;379228;379229;379230;379231;379232;379233;379234;379235;379236;379237;379238;379239 231980;231981;231982;231983;231984;231985;231986;231987;231988;231989;231990;231991;231992;231993;231994;231995;231996;231997;231998;231999;232000;232001;232002;232003;232004;232005;232006;232007;232008;232009;232010;232011;232012;232013;232014;232015;232016;232017;232018;232019;232020;232021;232022;232023;232024;232025;232026;232027;232028;232029;232030;232031;232032;232033;232034;232035;232036;232037;232038;232039;232040;232041;232042 232012 62 TQYGAPLR Unmodified 904.47667 0.47666558 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 15.792 16.304 2 0.003416 4458 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 92.319 84.607 54342000 0 0 0 12348000 11283000 13805000 0 0 0 0 975880 0 0 0 0 0 0 0 0 0 0 4534300 5651500 5744900 20427 1904 19782 379240;379241;379242;379243;379244;379245;379246 232043;232044;232045;232046;232047;232048 232045 6 TRAETFGFEVIVDDAQK Unmodified 1924.9531 0.95305639 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 41.005 39.073 3 0.0001303 15291 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 67.645 63.926 27192000 0 0 0 3069900 3005200 3780600 0 0 0 0 4486100 0 0 0 0 0 0 0 0 1636200 0 4604000 3408800 3201400 20428 1409 19783 379247;379248;379249;379250;379251;379252;379253;379254 232049;232050;232051;232052 232050 4 TRAEVTGSGK Unmodified 1004.5251 0.52507234 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 10.278 10.401 2 1.6836E-06 1942 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 169.93 106.26 157440000 0 0 0 0 0 0 0 0 0 21553000 17221000 18196000 0 0 0 24275000 13782000 9794500 0 0 0 18618000 15726000 18273000 20429 1630 19784 379255;379256;379257;379258;379259;379260;379261;379262;379263 232053;232054;232055;232056;232057 232055 5 TRCPIAGPECAK Unmodified 1358.6435 0.64348969 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 1 2 1 1 1 2 2 2 12.364 12.829 2;3 1.4018E-05 2692 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 131.43 102.71 116620000 0 0 0 21497000 22280000 24171000 0 0 0 11696000 6116000 8382300 0 0 0 2109500 1601400 1903500 0 0 0 5918700 5322400 5624400 20430 1935 19785 379264;379265;379266;379267;379268;379269;379270;379271;379272;379273;379274;379275;379276;379277;379278;379279;379280;379281;379282;379283 232058;232059;232060;232061;232062;232063;232064;232065;232066 232064 9 TRDNEIVAK Unmodified 1044.5564 0.55637247 984 P0AG44 rplQ 50S ribosomal protein L17 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.017 11.364 2 9.6485E-05 2206 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 147.51 120.25 574230000 0 0 1740500 769150 0 0 0 74204000 0 38601000 38220000 30512000 0 0 0 70546000 26445000 24997000 0 151410000 0 47355000 34946000 34483000 20431 984 19786 379284;379285;379286;379287;379288;379289;379290;379291;379292;379293;379294;379295;379296 232067;232068;232069;232070;232071;232072;232073;232074;232075 232068 9 TRDPAVDK Unmodified 900.46649 0.46649483 511 P0A9D4 cysE Serine acetyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 5.7476 6.6107 2 0.0013584 1569 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.21 104.43 131080000 22639000 23890000 23040000 0 0 0 0 0 8409800 0 0 0 9826100 5888000 7192600 0 0 0 10882000 10277000 9031400 0 0 0 20432 511 19787 379297;379298;379299;379300;379301;379302;379303;379304;379305;379306 232076;232077;232078;232079;232080;232081;232082;232083;232084 232081 9 TREELDQEAR Unmodified 1245.5949 0.59494282 430 P0A8H6 yihI Der GTPase-activating protein YihI yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.021 11.813 2 0.00010877 2991 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.89 107.38 81616000 14845000 12987000 15873000 0 0 0 4742200 9381700 7664400 0 0 0 0 2471000 0 0 0 0 3850400 6280800 3521000 0 0 0 20433 430 19788 379307;379308;379309;379310;379311;379312;379313;379314;379315;379316 232085;232086 232085 2 TREGNDFYHEMTDSNVIDK Unmodified 2269.991 0.99097482 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 27.336 26.146 3;4 1.642E-17 11961 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.58 157.97 1815600000 38273000 39472000 30066000 15998000 11281000 9606200 100130000 85244000 92168000 147800000 122790000 117920000 93829000 97989000 83145000 32940000 32715000 27425000 136870000 128250000 102410000 88850000 95412000 84972000 20434 646 19789 379317;379318;379319;379320;379321;379322;379323;379324;379325;379326;379327;379328;379329;379330;379331;379332;379333;379334;379335;379336;379337;379338;379339;379340;379341;379342;379343;379344;379345;379346;379347;379348;379349;379350;379351;379352;379353;379354;379355;379356;379357;379358;379359;379360;379361;379362;379363;379364 232087;232088;232089;232090;232091;232092;232093;232094;232095;232096;232097;232098;232099;232100;232101;232102;232103;232104;232105;232106;232107;232108;232109;232110;232111;232112;232113;232114;232115;232116;232117;232118 232107 32 TREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNR Unmodified 3911.7843 0.78429986 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 45.455 43.829 4;5 9.2714E-56 17583 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 239.93 239.89 476440000 0 0 0 29424000 17584000 21624000 0 0 0 82728000 84137000 69213000 0 0 0 17351000 17898000 0 0 0 0 42181000 45666000 48637000 20435 646 19790 379365;379366;379367;379368;379369;379370;379371;379372;379373;379374;379375;379376;379377;379378;379379;379380;379381;379382;379383;379384;379385 232119;232120;232121;232122;232123;232124;232125;232126;232127;232128;232129;232130;232131;232132;232133;232134;232135;232136;232137;232138;232139;232140 232125 22 TRELEKLENSLGGIK Unmodified 1685.9312 0.93119874 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 1 1 1 28.13 26.884 3;4 0.00011796 10044 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 80.387 72.854 101750000 0 0 0 2801200 5000800 4863800 0 0 0 13689000 13278000 12999000 0 0 0 10808000 11164000 9599300 0 0 0 6510500 4411400 6626100 20436 373 19791 379386;379387;379388;379389;379390;379391;379392;379393;379394;379395;379396;379397;379398;379399;379400;379401;379402;379403;379404;379405 232141;232142;232143;232144;232145;232146;232147;232148;232149;232150;232151;232152;232153;232154;232155;232156 232150 16 TRLEQEIATYR Unmodified 1378.7205 0.72047768 6;12;4 CON__P02533;CON__Q04695;CON__Q9QWL7;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8;CON__Q61782;CON__P08779;CON__ENSEMBL:ENSP00000377550;CON__P13646-1;CON__P35900 no no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.959 21.72 2 0.00018698 7365 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 118.28 103.6 35404000 0 4375100 3883900 0 0 0 0 4152500 0 5889500 5043200 5723900 0 2973200 2111400 0 0 0 0 0 0 1251500 0 0 + 20437 6;12;4 19792 379406;379407;379408;379409;379410;379411;379412;379413;379414 232157;232158 232157 2 TRPDLPNHEPR Unmodified 1330.6742 0.67419619 205;1157 P09152;P19319 narG;narZ Respiratory nitrate reductase 1 alpha chain;Respiratory nitrate reductase 2 alpha chain no no 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 1 1 1 1 2 2 2 2 2 2 2 2 11.475 12.174 2;3 4.8398E-05 2567 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 102.4 95.496 599470000 27078000 24986000 24533000 5276700 8504700 4113700 37359000 29389000 32598000 18851000 18259000 16420000 20313000 21969000 28667000 0 0 0 45396000 42719000 35463000 56937000 50816000 49821000 20438 205;1157 19793 379415;379416;379417;379418;379419;379420;379421;379422;379423;379424;379425;379426;379427;379428;379429;379430;379431;379432;379433;379434;379435;379436;379437;379438;379439;379440;379441;379442;379443;379444;379445;379446;379447;379448 232159;232160;232161;232162;232163;232164;232165;232166;232167;232168 232165 8 TRPDLSEIFDDSSK Unmodified 1608.7631 0.76313036 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 34.889 33.217 2;3 2.6136E-26 16014 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 258.23 230.93 1963300000 104230000 100130000 99917000 0 0 0 221110000 209450000 197260000 14469000 13477000 14685000 197200000 173600000 166900000 0 0 0 148590000 153810000 148450000 0 0 0 20439 539 19794 379449;379450;379451;379452;379453;379454;379455;379456;379457;379458;379459;379460;379461;379462;379463;379464;379465;379466;379467;379468;379469;379470;379471;379472;379473;379474;379475;379476;379477;379478 232169;232170;232171;232172;232173;232174;232175;232176;232177;232178;232179;232180;232181;232182;232183;232184;232185;232186;232187;232188;232189;232190;232191;232192;232193;232194;232195;232196;232197;232198;232199;232200;232201;232202;232203;232204;232205;232206;232207;232208;232209;232210;232211;232212;232213;232214;232215;232216 232184 48 TRPFNIQQGK Unmodified 1187.6411 0.64110515 1110 P15373 prlF Antitoxin PrlF yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 13.333 14.109 2 0.0050025 4398 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.221 48.918 13383000 4614900 2910700 3119600 0 0 0 2737800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20440 1110 19795 379479;379480;379481;379482 232217 232217 1 TRPGQHHR Unmodified 987.51109 0.51109403 808 P0ADU2 ygiN Probable quinol monooxygenase YgiN yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 3.3768 4.2845 2 0.0040478 729 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.28 79.153 250770000 28537000 21115000 22732000 156760 144180 0 0 0 0 0 0 0 29935000 21411000 18065000 0 0 0 42456000 38457000 27756000 0 0 0 20441 808 19796 379483;379484;379485;379486;379487;379488;379489;379490;379491;379492;379493 232218;232219;232220;232221;232222;232223;232224;232225;232226 232221 9 TRPIQASLDLQALK Unmodified 1552.8937 0.89369102 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.589 30.233 2 1.8066E-15 14126 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 202.32 168.43 196960000 49169000 39356000 39248000 0 0 0 6161400 3538000 4429200 0 0 0 6504100 4292000 6187800 0 0 0 13760000 11809000 12510000 0 0 0 20442 1326 19797 379494;379495;379496;379497;379498;379499;379500;379501;379502;379503;379504;379505 232227;232228;232229;232230;232231;232232;232233 232231 7 TRPVLEGSFR Unmodified 1160.6302 0.63020611 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 17.368 17.812 2;3 1.6836E-06 4673 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 169.93 135.85 923740000 101140000 111100000 113140000 54279000 48569000 38733000 49433000 43378000 34849000 31804000 28186000 27223000 13770000 12808000 14948000 4105700 4925300 4257600 48505000 62567000 27191000 17384000 15350000 16085000 20443 1935 19798 379506;379507;379508;379509;379510;379511;379512;379513;379514;379515;379516;379517;379518;379519;379520;379521;379522;379523;379524;379525;379526;379527;379528;379529;379530;379531;379532;379533;379534;379535;379536;379537;379538;379539;379540;379541;379542;379543;379544;379545;379546;379547;379548;379549 232234;232235;232236;232237;232238;232239;232240;232241;232242;232243;232244;232245;232246;232247;232248;232249;232250;232251;232252;232253;232254;232255;232256;232257;232258;232259 232252 22 TRVPDMSAYR Unmodified 1194.5815 0.58154136 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 2 2 2 17.606 17.941 2;3 4.7662E-05 4866 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 146.11 133.07 175530000 12910000 4180400 8138300 0 0 0 0 0 0 0 0 423300 0 2379300 2060700 57924000 41329000 46189000 0 0 0 0 0 0 20444 733 19799 379550;379551;379552;379553;379554;379555;379556;379557;379558;379559;379560;379561;379562 232260;232261;232262;232263;232264 232262 5 TRVPDMSAYRK Unmodified 1322.6765 0.67650438 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 2 2 2 14.338 14.327 2;3 8.3055E-05 3467 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 112.94 101.72 400010000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 214370000 82752000 102890000 0 0 0 0 0 0 20445 733 19800 379563;379564;379565;379566;379567;379568 232265;232266;232267;232268 232267 4 TRYDQQSDAWIMR Unmodified 1668.7678 0.76783858 1679 P64503 yebV Uncharacterized protein YebV yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 26.93 25.69 3 0.10437 11470 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 36.445 32.274 73446000 9677400 11810000 8542800 0 0 0 10835000 10333000 13734000 0 0 0 0 0 0 0 0 0 3714100 4801000 0 0 0 0 20446 1679 19801 379569;379570;379571;379572;379573;379574;379575;379576 232269 232269 0 TSAEALQQAIDDNFWQAEYR Unmodified 2355.0768 0.076753356 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.997 50.75 2;3 1.1748E-82 24725 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 422.02 409.86 2071200000 104240000 94578000 85123000 0 0 0 162920000 140670000 137490000 0 0 0 213570000 211800000 178540000 0 0 0 235850000 256500000 249870000 0 0 0 20447 1283 19802 379577;379578;379579;379580;379581;379582;379583;379584;379585;379586;379587;379588;379589;379590;379591;379592;379593;379594;379595;379596;379597;379598;379599;379600 232270;232271;232272;232273;232274;232275;232276;232277;232278;232279;232280;232281;232282 232273 13 TSAEMLYLQK Unmodified 1182.5955 0.59546009 1851 P76329 yedP Putative mannosyl-3-phosphoglycerate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 28.076 26.9 2 5.0374E-05 12187 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 135.83 128.94 152840000 39544000 41124000 32972000 0 0 0 8997400 11114000 12041000 0 0 0 0 2920600 4130100 0 0 0 0 0 0 0 0 0 20448 1851 19803 379601;379602;379603;379604;379605;379606;379607;379608 232283;232284;232285;232286;232287;232288 232287 6 TSAESILTTGPVVPVIVVK Unmodified 1909.1136 0.11357978 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 52.14 50.894 2;3 2.2186E-17 25131 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.24 166.24 9328900000 651160000 606390000 586900000 0 0 1562000 899630000 903780000 977270000 0 0 0 799140000 796520000 771020000 0 0 0 763710000 776340000 795520000 0 0 0 20449 490 19804 379609;379610;379611;379612;379613;379614;379615;379616;379617;379618;379619;379620;379621;379622;379623;379624;379625;379626;379627;379628;379629;379630;379631;379632;379633 232289;232290;232291;232292;232293;232294;232295;232296;232297;232298;232299;232300;232301;232302;232303;232304;232305;232306;232307;232308;232309;232310;232311;232312 232291 24 TSAVNWCPNDQTVLANEQVIDGCCWR Unmodified 3092.3539 0.35387297 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.637 47.306 2;3 1.4142E-40 23438 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 264.52 264.52 904240000 70410000 63258000 58965000 0 0 0 58778000 55314000 59861000 0 0 0 82697000 87449000 77827000 0 0 0 96296000 96891000 96493000 0 0 0 20450 170 19805 379634;379635;379636;379637;379638;379639;379640;379641;379642;379643;379644;379645;379646;379647;379648;379649;379650;379651;379652;379653;379654;379655;379656;379657 232313;232314;232315;232316;232317;232318;232319;232320;232321;232322;232323;232324;232325;232326;232327;232328;232329;232330;232331;232332;232333;232334;232335;232336 232313 24 TSAVVEETR Unmodified 990.49819 0.49818889 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.956 12.579 2 6.9009E-05 2842 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 144.12 139.79 194510000 0 13975000 11197000 5050100 4539400 5426200 0 0 27471000 8985700 9485500 8979300 17844000 0 20722000 0 0 928140 0 23050000 24094000 4540900 3956400 4267100 20451 201 19806 379658;379659;379660;379661;379662;379663;379664;379665;379666;379667;379668;379669;379670;379671;379672;379673;379674 232337;232338;232339;232340;232341;232342;232343;232344 232340 6 TSDFIESR Unmodified 953.44543 0.44542503 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 1 2 2 2 1 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 17.546 18.05 2 2.9843E-06 6405 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 181.81 168.03 2657100000 107280000 225920000 111030000 2809300 1726000 3419400 332380000 315410000 130690000 20667000 17824000 18523000 126910000 129680000 244110000 1728900 618460 1164400 287090000 292110000 279700000 2404000 1883900 1996100 20452 1716 19807 379675;379676;379677;379678;379679;379680;379681;379682;379683;379684;379685;379686;379687;379688;379689;379690;379691;379692;379693;379694;379695;379696;379697;379698;379699;379700;379701;379702;379703;379704;379705;379706;379707 232345;232346;232347;232348;232349;232350;232351;232352 232349 6 TSDIHETIIK Unmodified 1155.6136 0.61355299 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS 1 14.886 15.901 3 0.17317 5036 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 34.087 15.647 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20453 29 19808 379708 232353 232353 1 TSDKPVWMDQAEK Unmodified 1533.7133 0.71334339 614 P0AAU2 ybfA Uncharacterized protein YbfA yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.414 20.619 3 0.00024979 7710 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 66.784 60.365 155200000 10375000 9516800 8573700 2768000 3088300 3014800 13935000 12921000 9984200 4112400 4667800 3604400 19277000 16906000 16595000 0 0 0 0 6677800 5520200 2007400 0 1652800 20454 614 19809 379709;379710;379711;379712;379713;379714;379715;379716;379717;379718;379719;379720;379721;379722;379723;379724;379725;379726;379727 232354;232355;232356;232357 232357 3 TSEDINDALNYR Unmodified 1409.6423 0.64228694 693 P0AC19 folX D-erythro-7,8-dihydroneopterin triphosphate epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.486 27.239 2 8.3606E-51 12400 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 315.98 310.2 622460000 62821000 52558000 51707000 0 0 0 46851000 41394000 42335000 0 0 0 51601000 43050000 35836000 0 0 0 63829000 69653000 60831000 0 0 0 20455 693 19810 379728;379729;379730;379731;379732;379733;379734;379735;379736;379737;379738;379739 232358;232359;232360;232361;232362;232363;232364;232365;232366;232367;232368 232365 11 TSEELHHYYEIVWDEEQTHK Unmodified 2572.1506 0.15064658 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 3 3 3 3 3 3 33.301 31.851 3;4;5 3.7535E-68 15330 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 294.94 294.81 2226400000 197180000 178790000 201150000 1244200 1430800 0 232120000 213500000 218450000 0 0 0 172760000 168490000 166660000 0 0 0 133830000 149230000 191590000 0 0 0 20456 421 19811 379740;379741;379742;379743;379744;379745;379746;379747;379748;379749;379750;379751;379752;379753;379754;379755;379756;379757;379758;379759;379760;379761;379762;379763;379764;379765;379766;379767;379768;379769;379770;379771;379772;379773;379774;379775;379776;379777 232369;232370;232371;232372;232373;232374;232375;232376;232377;232378;232379;232380;232381;232382;232383;232384;232385;232386;232387;232388;232389;232390;232391;232392;232393;232394;232395;232396;232397 232376 29 TSEGFFR Unmodified 842.39227 0.39226725 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.456 21.658 2 0.0012721 9086 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.94 113.5 12825000000 3184400000 3789600000 2582800000 0 0 0 555430000 590860000 558230000 0 0 0 185780000 127280000 145140000 0 0 0 385240000 366770000 351970000 0 708560 781450 20457 517 19812 379778;379779;379780;379781;379782;379783;379784;379785;379786;379787;379788;379789;379790;379791 232398;232399;232400;232401;232402;232403;232404;232405;232406;232407;232408;232409;232410;232411;232412;232413;232414;232415 232398 18 TSELAQSLSSWPK Unmodified 1432.7198 0.71980898 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 37.546 35.568 2 6.0813E-08 17682 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 156.48 146.25 71289000 0 0 0 0 0 0 24585000 22459000 22523000 0 0 0 0 1722700 0 0 0 0 0 0 0 0 0 0 20458 722 19813 379792;379793;379794;379795 232416;232417;232418 232416 3 TSENPEYK Unmodified 966.42944 0.42944062 707 P0AC81 gloA Lactoylglutathione lyase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.701 11.554 2 0.00043484 2735 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 139.28 131.34 1259700000 148530000 119940000 77416000 1671400 2892900 0 100830000 88374000 92648000 0 0 0 91719000 93195000 92547000 0 0 0 130920000 114390000 104590000 0 0 0 20459 707 19814 379796;379797;379798;379799;379800;379801;379802;379803;379804;379805;379806;379807;379808;379809 232419;232420;232421;232422 232422 4 TSENPLLALR Unmodified 1112.619 0.61897272 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.575 34.006 2 4.3896E-09 16344 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 194.2 183.97 619640000 174960000 148710000 141040000 2844000 2463500 2540300 13218000 10945000 11382000 0 0 0 19183000 19031000 16947000 0 0 0 15384000 21359000 19627000 0 0 0 20460 529 19815 379810;379811;379812;379813;379814;379815;379816;379817;379818;379819;379820;379821;379822;379823;379824 232423;232424;232425;232426;232427;232428;232429;232430;232431;232432 232424 10 TSGAPLEGLVR Unmodified 1098.6033 0.60332266 1618 P60340 truB tRNA pseudouridine synthase B yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.185 28.705 2 0.00041792 13373 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 88.496 84.561 189830000 13586000 12813000 10702000 0 0 0 14362000 15097000 14453000 0 6742600 5678700 15239000 17486000 14523000 0 0 0 13400000 19714000 16034000 0 0 0 20461 1618 19816 379825;379826;379827;379828;379829;379830;379831;379832;379833;379834;379835;379836;379837;379838 232433;232434;232435;232436;232437;232438;232439;232440;232441 232437 2 TSGVGDVQLFGSQYAMR Unmodified 1814.8621 0.8621329 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 42.92 40.813 2 1.3951E-06 16670 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 104.17 91.544 26735000 0 0 0 1299400 1318600 0 0 0 0 3929800 4342800 3781300 0 0 0 0 0 0 0 0 5434400 0 4040900 2587400 20462 1365 19817 379839;379840;379841;379842;379843;379844;379845;379846 232442;232443 232442 1 TSHITVVVSDR Unmodified 1212.6463 0.64625011 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 2 2 2 3 3 3 2 3 3 3 2 4 2 3 2 4 3 4 3 3 3 15.217 15.767 2;3 3.3193E-10 5134 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 185.81 169.27 2816500000 333170000 324250000 243730000 33577000 34446000 34854000 123900000 119490000 110720000 51412000 43598000 50247000 126520000 54105000 99344000 39939000 40827000 35596000 230790000 218180000 246810000 84148000 76455000 60397000 20463 1636 19818 379847;379848;379849;379850;379851;379852;379853;379854;379855;379856;379857;379858;379859;379860;379861;379862;379863;379864;379865;379866;379867;379868;379869;379870;379871;379872;379873;379874;379875;379876;379877;379878;379879;379880;379881;379882;379883;379884;379885;379886;379887;379888;379889;379890;379891;379892;379893;379894;379895;379896;379897;379898;379899;379900;379901;379902;379903;379904;379905;379906;379907;379908;379909;379910;379911;379912;379913;379914;379915;379916 232444;232445;232446;232447;232448;232449;232450;232451;232452;232453;232454;232455;232456;232457;232458;232459;232460;232461;232462;232463;232464;232465;232466;232467;232468;232469;232470;232471;232472;232473;232474;232475;232476;232477;232478;232479;232480;232481;232482;232483;232484;232485;232486;232487;232488;232489;232490;232491;232492;232493;232494;232495;232496;232497;232498;232499;232500;232501;232502;232503;232504 232468 51 TSHTSIMAR Unmodified 1002.4917 0.49166372 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.11 11.796 2 9.6568E-06 2866 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 167.24 140.28 4062200000 263890000 237930000 234770000 5263000 4576100 4953400 389460000 390200000 434980000 5275800 5229500 7164600 369860000 318530000 317000000 0 0 0 396020000 332450000 333290000 2762300 4378700 4244900 20464 192 19819 379917;379918;379919;379920;379921;379922;379923;379924;379925;379926;379927;379928;379929;379930;379931;379932;379933;379934;379935;379936;379937 232505;232506;232507;232508;232509;232510;232511;232512;232513;232514;232515;232516;232517;232518;232519;232520;232521;232522;232523 232510 19 TSHTSIMAR Oxidation (M) 1018.4866 0.48657834 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 10.011 10.8 2 0.0007094 2456 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.19 91.043 82972000 4458700 3383100 664620 0 0 0 19353000 19123000 17499000 0 0 0 0 0 9755600 0 0 0 261610 4004800 4468900 0 0 0 20465 192 19819 379938;379939;379940;379941;379942;379943;379944;379945;379946;379947 232524;232525;232526;232527;232528 232526 59 5 TSIAWTR Unmodified 833.43955 0.43955179 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.183 20.494 2 0.0021192 8356 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.93 108.18 870770000 61997000 56276000 59337000 741100 761760 688740 96400000 75905000 76958000 0 3407600 2724900 78372000 70688000 65947000 0 0 0 72537000 67502000 76276000 2036800 0 2218100 20466 1956 19820 379948;379949;379950;379951;379952;379953;379954;379955;379956;379957;379958;379959;379960;379961;379962;379963;379964;379965;379966 232529 232529 1 TSIWQWIHHQK Unmodified 1462.747 0.7469672 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 3 3 3 3 3 3 30.39 29.023 2;3;4 6.1449E-07 14022 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 187.14 185.55 5481800000 1288800000 1161600000 934880000 694860 0 704980 439630000 426050000 414980000 0 0 0 133610000 108140000 102590000 0 0 0 146830000 176870000 146450000 0 0 0 20467 195 19821 379967;379968;379969;379970;379971;379972;379973;379974;379975;379976;379977;379978;379979;379980;379981;379982;379983;379984;379985;379986;379987;379988;379989;379990;379991;379992;379993;379994;379995;379996;379997;379998;379999;380000;380001;380002;380003;380004 232530;232531;232532;232533;232534;232535;232536;232537;232538;232539;232540;232541;232542;232543;232544;232545;232546;232547;232548;232549;232550;232551;232552;232553;232554;232555;232556;232557;232558;232559;232560;232561;232562;232563;232564;232565 232531 36 TSLDDWLR Unmodified 1004.4927 0.49270958 1180 P21369 pncA Pyrazinamidase/nicotinamidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.936 40.237 2 0.0001154 20096 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 158.08 52.693 259330000 21198000 18536000 19796000 0 0 0 18419000 20559000 18143000 0 0 0 17774000 19548000 26540000 0 0 0 29476000 25709000 23632000 0 0 0 20468 1180 19822 380005;380006;380007;380008;380009;380010;380011;380012;380013;380014;380015;380016 232566;232567;232568;232569;232570;232571;232572;232573;232574;232575;232576 232566 11 TSLDSPLPVQVLEASPK Unmodified 1779.9618 0.96183016 1121 P16676 cysA Sulfate/thiosulfate import ATP-binding protein CysA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.028 46.517 2 0.12536 18758 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 48.467 42.743 88339000 4803300 3972400 4754500 1392700 1557800 0 5672200 4308300 5458500 3454000 3213300 2692600 5601200 7005800 4475600 0 0 0 9877900 9708500 10391000 0 0 0 20469 1121 19823 380017;380018;380019;380020;380021;380022;380023;380024;380025;380026;380027;380028;380029;380030;380031;380032;380033 232577 232577 0 TSLGQSIAK Unmodified 903.50255 0.50254598 536 P0A9M0 lon Lon protease yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 2 15.041 15.16 2 0.00075473 3843 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 98.629 68.126 147150000 0 0 0 0 0 0 65765000 0 0 27788000 25052000 24415000 0 0 0 2413800 1375200 343900 0 0 0 0 0 0 20470 536 19824 380034;380035;380036;380037;380038;380039;380040;380041 232578;232579 232578 2 TSLIPHQLNIAHDVGR Unmodified 1769.9537 0.95366551 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 28.2 26.962 2;3;4 2.5348E-14 8841 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 178.22 175.32 8246900000 57913000 60668000 51603000 0 0 607980 35960000 61773000 54468000 1072900000 870620000 936830000 52371000 61785000 61064000 955560000 892200000 1021900000 95821000 91379000 65382000 601470000 592070000 552640000 20471 1616 19825 380042;380043;380044;380045;380046;380047;380048;380049;380050;380051;380052;380053;380054;380055;380056;380057;380058;380059;380060;380061;380062;380063;380064;380065;380066;380067;380068;380069;380070;380071;380072;380073;380074;380075;380076;380077;380078;380079;380080;380081;380082;380083;380084;380085;380086;380087;380088;380089;380090;380091;380092;380093;380094;380095;380096;380097;380098;380099;380100;380101;380102 232580;232581;232582;232583;232584;232585;232586;232587;232588;232589;232590;232591;232592;232593;232594;232595;232596;232597;232598;232599;232600;232601;232602;232603;232604;232605;232606;232607;232608;232609;232610;232611;232612;232613;232614;232615;232616;232617;232618;232619;232620;232621;232622;232623;232624;232625;232626 232582 46 TSLIPHQLNIAHDVGRR Unmodified 1926.0548 0.054776543 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 6 7 7 5 4 6 6 6 6 23.63 22.764 2;3;4;5 2.1553E-24 7082 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 251.68 230.72 10533000000 0 0 0 876470 333620 0 0 0 0 1170300000 1086500000 1312700000 0 0 0 1421400000 1253000000 1443200000 0 0 0 947840000 1033000000 864170000 20472 1616 19826 380103;380104;380105;380106;380107;380108;380109;380110;380111;380112;380113;380114;380115;380116;380117;380118;380119;380120;380121;380122;380123;380124;380125;380126;380127;380128;380129;380130;380131;380132;380133;380134;380135;380136;380137;380138;380139;380140;380141;380142;380143;380144;380145;380146;380147;380148;380149;380150;380151;380152;380153;380154;380155;380156;380157 232627;232628;232629;232630;232631;232632;232633;232634;232635;232636;232637;232638;232639;232640;232641;232642;232643;232644;232645;232646;232647;232648;232649;232650;232651;232652;232653;232654;232655;232656;232657;232658;232659;232660;232661;232662;232663;232664;232665;232666;232667;232668;232669;232670;232671;232672;232673;232674;232675;232676;232677;232678;232679 232633 53 TSLKDTTVGR Unmodified 1076.5826 0.58258722 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 3 2 2 2 11.98 12.346 2;3 1.4248E-07 2632 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 204.07 204.07 36342000000 0 0 0 19535000 18024000 17854000 0 0 0 2594800000 2420800000 2767900000 0 0 0 7830400000 6481400000 6348800000 0 0 0 2752000000 2472600000 2617400000 20473 458 19827 380158;380159;380160;380161;380162;380163;380164;380165;380166;380167;380168;380169;380170;380171;380172;380173;380174;380175;380176;380177;380178;380179;380180;380181;380182 232680;232681;232682;232683;232684;232685;232686;232687;232688;232689;232690;232691;232692;232693;232694;232695;232696;232697;232698;232699;232700;232701;232702;232703 232685 24 TSLLDYIR Unmodified 979.53385 0.53384611 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.37 43.951 2 1.7147E-06 17605 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 190.88 161.3 1332200000 155320000 145550000 129530000 6389000 6472500 5439400 76156000 71431000 61809000 31653000 37149000 34744000 75070000 80605000 61244000 34387000 30891000 25101000 79797000 83976000 79235000 8413400 5420500 6422000 20474 297 19828 380183;380184;380185;380186;380187;380188;380189;380190;380191;380192;380193;380194;380195;380196;380197;380198;380199;380200;380201;380202;380203;380204;380205;380206 232704;232705;232706;232707;232708;232709;232710;232711;232712;232713;232714;232715;232716;232717;232718;232719;232720;232721;232722;232723;232724;232725 232708 22 TSLPGSTGLR Unmodified 987.53491 0.53490874 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 19.423 19.49 2 0.00048825 5513 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 99.802 64.507 2311200000 0 0 0 7722500 0 0 0 598410000 560320000 531890000 0 536140000 0 0 0 31988000 21294000 23416000 0 0 0 0 0 0 20475 1088 19829 380207;380208;380209;380210;380211;380212;380213;380214 232726;232727;232728;232729 232727 4 TSLVIAHR Unmodified 895.52395 0.52395013 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.367 14.021 2 0.00045063 4214 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.37 93.646 149390000 6583200 6628900 6212000 2324500 1381400 2066700 9257800 9367000 9349000 5335600 3212500 4331800 11768000 12083000 8459400 2332700 0 0 12475000 11568000 12846000 4208700 3986900 3616100 20476 1631 19830 380215;380216;380217;380218;380219;380220;380221;380222;380223;380224;380225;380226;380227;380228;380229;380230;380231;380232;380233;380234;380235;380236 232730;232731;232732;232733;232734;232735 232733 5 TSLVVPGLDTLR Unmodified 1269.7293 0.72925145 618 P0AAY6 ybjN Uncharacterized protein YbjN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.56 42.867 2 3.9944E-05 20781 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 110.53 96.764 118440000 19343000 15462000 13887000 0 824930 0 5865700 6287100 4801000 2173500 1872700 2841400 7315800 5835900 4483800 0 0 0 10038000 9539300 7864700 0 0 0 20477 618 19831 380237;380238;380239;380240;380241;380242;380243;380244;380245;380246;380247;380248;380249;380250;380251;380252 232736;232737;232738;232739;232740;232741;232742 232737 7 TSMVSLCEQLSK Unmodified 1381.6581 0.6581367 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 31.506 29.808 2 0.011864 10206 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 58.676 55.144 8492000 0 0 0 0 2184800 2184500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2154700 1968000 0 20478 863 19832 380253;380254;380255;380256;380257 232743;232744 232743 1 TSNHHDVVLNWLK Unmodified 1561.8001 0.80012499 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 26.641 25.537 2;3;4 6.0564E-18 10960 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 221.32 204.68 3234100000 343590000 406350000 389970000 0 0 0 244880000 229140000 209750000 0 0 0 190970000 200790000 180280000 0 0 0 301080000 290360000 246890000 0 0 0 20479 834 19833 380258;380259;380260;380261;380262;380263;380264;380265;380266;380267;380268;380269;380270;380271;380272;380273;380274;380275;380276;380277;380278;380279;380280;380281;380282;380283;380284;380285;380286;380287;380288;380289;380290;380291;380292;380293 232745;232746;232747;232748;232749;232750;232751;232752;232753;232754;232755;232756;232757;232758;232759;232760;232761;232762;232763;232764;232765;232766;232767;232768;232769;232770;232771;232772;232773;232774;232775;232776;232777;232778;232779;232780 232776 36 TSPELAELLR Unmodified 1127.6186 0.61863837 911 P0AF50 yjbR Uncharacterized protein YjbR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.577 37.786 2 0.00059041 18227 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.143 75.235 764840000 122080000 114660000 124260000 3136700 2828500 2633900 103940000 89270000 82205000 1026900 0 989450 14921000 15099000 14773000 0 0 0 29056000 23288000 20665000 0 0 0 20480 911 19834 380294;380295;380296;380297;380298;380299;380300;380301;380302;380303;380304;380305;380306;380307;380308;380309;380310 232781;232782;232783;232784;232785;232786;232787;232788;232789;232790;232791;232792 232788 11 TSPLKPVSTVQPR Unmodified 1408.8038 0.80381338 872 P0AEM4 flgM Negative regulator of flagellin synthesis yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 2 2 2 2 2 15.672 16.501 2;3 2.1053E-05 5765 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.463 92.148 300060000 72668000 81688000 64769000 1142900 1133700 1129000 8789900 8631100 10630000 0 0 0 3514600 5792200 5472900 0 0 0 12289000 10891000 11519000 0 0 0 20481 872 19835 380311;380312;380313;380314;380315;380316;380317;380318;380319;380320;380321;380322;380323;380324;380325;380326;380327;380328;380329;380330;380331;380332;380333;380334;380335;380336;380337 232793;232794;232795;232796;232797;232798 232793 6 TSPLTQR Unmodified 801.43447 0.43446642 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.905 12.348 2 0.15095 2884 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 56.122 30.228 55429000 0 0 0 0 0 0 0 0 0 9387600 8454700 7761700 8408300 0 0 2606400 2105000 0 5529500 3957500 7218700 0 0 0 20482 143 19836 380338;380339;380340;380341;380342;380343;380344;380345;380346 232799 232799 0 TSPSIDVAFQAVDQDALK Unmodified 1903.9527 0.95272204 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 3 2 2 2 2 2 47.343 45.946 2;3 3.0863E-29 22178 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 217.2 203.8 1491600000 150090000 121530000 115720000 0 0 0 127360000 110370000 121300000 0 0 0 103370000 102880000 88415000 0 0 0 153210000 145650000 151730000 0 0 0 20483 58 19837 380347;380348;380349;380350;380351;380352;380353;380354;380355;380356;380357;380358;380359;380360;380361;380362;380363;380364;380365;380366;380367;380368;380369;380370;380371;380372 232800;232801;232802;232803;232804;232805;232806;232807;232808;232809;232810;232811;232812;232813;232814;232815;232816;232817;232818;232819;232820;232821;232822;232823 232809 23 TSQAAPVQAQPR Unmodified 1252.6524 0.65239812 1329 P29131 ftsN Cell division protein FtsN yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.991 12.679 2 0.010323 3488 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 61.78 45.582 60802000 0 0 0 1606700 1227300 1652000 7989100 7830400 0 2518100 1985600 1633200 4539700 3986900 3473300 0 0 0 6282700 6467800 6218300 1160100 906010 1325300 20484 1329 19838 380373;380374;380375;380376;380377;380378;380379;380380;380381;380382;380383;380384;380385;380386;380387;380388;380389 232824;232825 232825 2 TSQDADFTAK Unmodified 1082.488 0.48801813 1732 P69428 tatA Sec-independent protein translocase protein TatA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.745 13.406 2 1.3774E-05 3320 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 152.34 132.55 1059600000 33243000 42711000 36909000 8518600 9866600 9423300 90786000 116980000 111790000 17245000 20896000 13707000 74060000 71310000 63030000 0 3288400 0 111350000 103330000 91077000 10137000 9348800 10621000 20485 1732 19839 380390;380391;380392;380393;380394;380395;380396;380397;380398;380399;380400;380401;380402;380403;380404;380405;380406;380407;380408;380409;380410;380411;380412 232826;232827;232828;232829;232830;232831;232832;232833;232834;232835;232836;232837;232838;232839;232840;232841;232842;232843;232844;232845;232846 232828 21 TSQLITPLFEYSGACSGCGETPYIK Unmodified 2778.2881 0.28806804 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 51.313 49.961 3 1.2173E-06 23490 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 92.886 87.436 93581000 0 0 0 0 0 0 12255000 18533000 14948000 0 0 0 18615000 0 0 0 0 0 29231000 0 0 0 0 0 20486 1609 19840 380413;380414;380415;380416;380417 232847;232848 232848 2 TSQLVSQICNMPIPANK Unmodified 1899.9547 0.95465307 204 P09151 leuA 2-isopropylmalate synthase yes yes 0 0 0 By MS/MS 1 38.202 36.744 2 4.3271E-11 17685 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.36 144.31 12021000 0 0 12021000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20487 204 19841 380418 232849 232849 1 TSQNSELNNMQDLVEDYKK Unmodified 2255.0376 0.037590658 17 CON__P35908 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.304 33.755 3 4.5985E-07 13023 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 103.41 100.31 144180000 0 0 0 12705000 10435000 11351000 0 0 0 9292300 7188200 8222300 0 0 0 6432600 5334400 5264200 0 0 0 21187000 25117000 21655000 + 20488 17 19842 380419;380420;380421;380422;380423;380424;380425;380426;380427;380428;380429;380430 232850;232851;232852;232853;232854;232855;232856;232857;232858;232859 232854 10 TSQYLLSTLK Unmodified 1152.639 0.63903946 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.694 30.316 2 0.002965 13986 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.898 83.642 694670000 167510000 170020000 140650000 959400 705600 0 6010400 0 0 0 0 0 3584700 0 195380000 0 0 0 4785500 4544400 0 0 512630 0 20489 1120 19843 380431;380432;380433;380434;380435;380436;380437;380438;380439;380440;380441 232860;232861;232862;232863 232862 4 TSSGILYEVDAR Unmodified 1309.6514 0.65139506 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 30.661 29.34 2 0.021653 13573 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 58.676 46.149 47380000 8004300 8361800 7167400 0 0 0 6416000 0 4490900 0 0 0 0 4273000 2712700 0 0 0 0 5953400 0 0 0 0 20490 1353 19844 380442;380443;380444;380445;380446;380447;380448;380449 232864 232864 0 TSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFR Unmodified 3677.8036 0.80356197 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 3 3 3 1 1 1 3 3 3 1 1 3 3 3 1 1 49.918 48.57 3;4;5 2.4456E-69 23668 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 267.93 266.53 9804300000 782320000 619770000 609290000 0 4942000 4988500 759370000 789620000 732900000 10466000 12473000 12594000 852170000 793560000 854140000 12491000 16489000 0 965740000 983880000 974010000 0 5331000 7760700 20491 674 19845 380450;380451;380452;380453;380454;380455;380456;380457;380458;380459;380460;380461;380462;380463;380464;380465;380466;380467;380468;380469;380470;380471;380472;380473;380474;380475;380476;380477;380478;380479;380480;380481;380482;380483;380484;380485;380486;380487;380488;380489;380490;380491;380492;380493;380494 232865;232866;232867;232868;232869;232870;232871;232872;232873;232874;232875;232876;232877;232878;232879;232880;232881;232882;232883;232884;232885;232886;232887;232888;232889;232890;232891;232892;232893;232894;232895;232896;232897;232898;232899;232900;232901 232876 36 TSSTGLVYQVVEAGK Unmodified 1537.7988 0.79878758 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 2 1 1 1 36.392 34.783 2;3 4.3283E-07 16055 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.28 122.31 3221100000 108870000 113710000 98885000 0 0 0 439750000 406620000 397230000 0 0 0 261400000 210390000 231720000 0 0 0 393600000 303290000 255670000 0 0 0 20492 1572 19846 380495;380496;380497;380498;380499;380500;380501;380502;380503;380504;380505;380506;380507;380508;380509 232902;232903;232904;232905;232906;232907;232908;232909;232910;232911;232912;232913;232914;232915 232914 10 TSSTGLVYQVVEAGKGEAPK Unmodified 2020.0477 0.047685059 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 2 2 2 1 1 2 2 2 1 33.824 32.41 2;3 6.2297E-23 15392 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 228.25 221.57 1959300000 115200000 112180000 91419000 0 1984700 0 199240000 213540000 190980000 2781500 0 0 154850000 150280000 130470000 1480700 878880 0 207140000 198430000 186010000 2422000 0 0 20493 1572 19847 380510;380511;380512;380513;380514;380515;380516;380517;380518;380519;380520;380521;380522;380523;380524;380525;380526;380527;380528;380529;380530;380531;380532;380533;380534;380535;380536;380537;380538 232916;232917;232918;232919;232920;232921;232922;232923;232924;232925;232926;232927;232928;232929;232930;232931;232932;232933;232934;232935;232936;232937 232925 22 TSTDEQKK Unmodified 935.45599 0.45598972 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 3.4577 4.2859 2 0.10968 596 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.854 46.999 11636000 3857600 3427000 4223000 0 0 0 0 0 0 0 0 0 0 0 128210 0 0 0 0 0 0 0 0 0 20494 757 19848 380539;380540;380541;380542 232938;232939 232938 2 TSTFLDVYIER Unmodified 1342.6769 0.67688153 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 1 1 2 3 3 1 1 1 3 4 3 1 1 1 2 2 3 1 1 1 44.61 43.113 2;3 3.5461E-05 21114 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 156.83 151.51 12346000000 327410000 307130000 252060000 7940500 8738600 6666500 1847000000 1760900000 1631100000 17899000 16468000 14976000 1287700000 1134200000 1060000000 11815000 7680300 8531300 918100000 867120000 827400000 8973200 8260200 8103500 20495 212 19849 380543;380544;380545;380546;380547;380548;380549;380550;380551;380552;380553;380554;380555;380556;380557;380558;380559;380560;380561;380562;380563;380564;380565;380566;380567;380568;380569;380570;380571;380572;380573;380574;380575;380576;380577;380578;380579;380580;380581;380582;380583;380584;380585;380586;380587 232940;232941;232942;232943;232944;232945;232946;232947;232948;232949;232950;232951;232952;232953;232954;232955;232956;232957;232958;232959;232960;232961;232962;232963;232964;232965;232966;232967;232968;232969;232970;232971;232972;232973;232974;232975;232976;232977;232978;232979;232980;232981;232982;232983;232984;232985;232986;232987;232988 232954 42 TSTGLALK Unmodified 789.45962 0.45961853 1167 P20966 fruA PTS system fructose-specific EIIBC component;Fructose-specific phosphotransferase enzyme IIB component;Fructose permease IIC component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.431 16.12 2 0.054071 5542 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.917 34.731 168080000 11325000 12787000 10603000 1197700 1042900 1089900 9436500 11997000 12635000 0 1674900 1485600 15481000 11324000 11981000 0 0 0 15454000 18634000 17347000 1120700 1459300 0 20496 1167 19850 380588;380589;380590;380591;380592;380593;380594;380595;380596;380597;380598;380599;380600;380601;380602;380603;380604;380605;380606 232989;232990;232991;232992;232993;232994;232995;232996;232997 232990 9 TSTPGLGLLLWMQK Unmodified 1543.8432 0.84323535 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.631 53.199 2 0.00020988 26324 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 85.377 76.189 139540000 0 3805100 4933000 0 0 0 16353000 12502000 0 0 0 0 11628000 10637000 15452000 0 0 0 20763000 21365000 22099000 0 0 0 20497 1371 19851 380607;380608;380609;380610;380611;380612;380613;380614;380615;380616;380617 232998;232999 232999 2 TSVVNASISGDTSQQGLAR Unmodified 1889.9443 0.94428262 776 P0ADA1 tesA Acyl-CoA thioesterase I yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 25.514 24.431 2 6.0797E-14 11173 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 188.09 174.43 163960000 20109000 18231000 18468000 0 0 0 21521000 11290000 14110000 0 0 0 11888000 10372000 9949800 0 0 0 13512000 14510000 0 0 0 0 20498 776 19852 380618;380619;380620;380621;380622;380623;380624;380625;380626;380627;380628 233000;233001;233002 233001 3 TSWVYAGK Unmodified 910.45487 0.45486751 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 21.182 21.479 2 0.01425 8693 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 72.138 50.592 540560000 0 0 0 0 0 0 47682000 50392000 49126000 0 0 0 60297000 43878000 51202000 0 0 0 92643000 79891000 65449000 0 0 0 20499 1497 19853 380629;380630;380631;380632;380633;380634;380635;380636;380637 233003;233004;233005;233006;233007;233008;233009;233010 233005 7 TTAAACLMTEAPSFANPTALAELSIQVVK Unmodified 3004.5249 0.52494427 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.259 53.786 3 8.5868E-12 25451 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 131.38 129.15 578650000 36671000 35628000 28119000 0 0 0 53137000 37893000 48120000 0 0 0 60115000 52503000 49894000 0 0 0 59368000 58941000 58260000 0 0 0 20500 1189 19854 380638;380639;380640;380641;380642;380643;380644;380645;380646;380647;380648;380649 233011;233012;233013;233014;233015;233016;233017 233017 7 TTAAMTHVEANSVE Unmodified 1459.6613 0.66130782 578 P0AA82 codB Cytosine permease yes yes 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 17.732 18.456 2 0.0013886 5065 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 85.355 85.355 10539000 0 0 3907500 1702100 2586000 2342900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20501 578 19855 380650;380651;380652;380653 233018;233019 233018 2 TTADYVDAGYWAASAIK Unmodified 1801.8523 0.85227972 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 2 2 2 2 1 1 47.088 45.508 2;3 1.4147E-08 18251 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 147.73 141.7 409480000 136510000 141160000 0 16923000 18036000 17882000 0 0 0 24470000 28668000 22383000 0 0 0 1719000 0 0 0 0 0 0 1736200 0 20502 1211 19856 380654;380655;380656;380657;380658;380659;380660;380661;380662;380663;380664;380665;380666;380667;380668;380669;380670 233020;233021;233022;233023;233024;233025;233026;233027;233028;233029;233030;233031 233023 12 TTALALHTVSGQK Unmodified 1325.7303 0.73031409 200 P09126 hemD Uroporphyrinogen-III synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 15.16 15.982 3 0.06194 5436 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 36.107 32.061 48735000 0 0 0 0 0 0 8606600 10184000 6362100 0 0 0 3397500 3194800 0 0 0 0 5299200 3446200 8244000 0 0 0 20503 200 19857 380671;380672;380673;380674;380675;380676;380677;380678 233032;233033 233032 2 TTALLTDMNQVLASSAGNAVEVR Unmodified 2360.2006 0.20057366 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 52.33 50.97 2;3 5.6644E-154 25074 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 418.08 406.47 319660000 0 0 0 0 0 0 186890000 48987000 50185000 0 0 0 29255000 0 0 0 0 0 0 0 4345000 0 0 0 20504 167 19858 380679;380680;380681;380682;380683;380684 233034;233035;233036;233037;233038 233037 5 TTCSLCSR Unmodified 983.41645 0.41644987 1812 P76055 ttcA tRNA 2-thiocytidine biosynthesis protein TtcA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.29 12.123 2 0.0053093 3160 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 86.833 85.755 186860000 11483000 8899100 6199100 0 0 0 7123300 11921000 14324000 0 0 0 21558000 18241000 21116000 0 0 0 19977000 20843000 25180000 0 0 0 20505 1812 19859 380685;380686;380687;380688;380689;380690;380691;380692;380693;380694;380695;380696 233039;233040;233041;233042 233040 4 TTDELDAIFFGR Unmodified 1383.667 0.66704513 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 52.841 51.596 2;3 2.3231E-23 25439 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 291.35 273.53 1106300000 101560000 101060000 95692000 0 0 0 116470000 120710000 110610000 0 0 0 78207000 73365000 73405000 1873300 1335800 1766300 72654000 83098000 74481000 0 0 0 20506 1364 19860 380697;380698;380699;380700;380701;380702;380703;380704;380705;380706;380707;380708;380709;380710;380711;380712;380713;380714;380715;380716;380717;380718;380719;380720;380721;380722 233043;233044;233045;233046;233047;233048;233049;233050;233051;233052;233053;233054;233055 233045 13 TTDVEATVNQIK Unmodified 1317.6776 0.67760981 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.964 22.964 2 4.7677E-18 9929 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 213.53 180.69 735790000 77870000 0 0 2599000 2361500 2704000 68036000 71380000 77780000 1478900 0 0 65989000 60297000 51767000 0 0 0 87353000 78012000 78977000 2455600 2657900 4072700 20507 1649 19861 380723;380724;380725;380726;380727;380728;380729;380730;380731;380732;380733;380734;380735;380736;380737;380738;380739;380740;380741 233056;233057;233058;233059;233060;233061;233062;233063;233064;233065;233066;233067;233068 233064 13 TTDVTGTIELPEGVEMVMPGDNIK Unmodified 2545.2292 0.22915618 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 2 2 2 3 3 4 2 2 2 3 3 3 2 2 2 4 3 3 2 2 2 53.484 52.194 2;3;4 5.2255E-97 24382 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 321.34 313.88 49082000000 4410900000 4016800000 3623700000 81814000 97030000 86873000 3418300000 3484700000 3818200000 58689000 57889000 52205000 4201800000 4190000000 4066700000 51809000 52262000 53084000 4370900000 4447000000 4306900000 52164000 36905000 44777000 20508 1048 19862 380742;380743;380744;380745;380746;380747;380748;380749;380750;380751;380752;380753;380754;380755;380756;380757;380758;380759;380760;380761;380762;380763;380764;380765;380766;380767;380768;380769;380770;380771;380772;380773;380774;380775;380776;380777;380778;380779;380780;380781;380782;380783;380784;380785;380786;380787;380788;380789;380790;380791;380792;380793;380794;380795;380796;380797;380798;380799;380800;380801;380802;380803;380804 233069;233070;233071;233072;233073;233074;233075;233076;233077;233078;233079;233080;233081;233082;233083;233084;233085;233086;233087;233088;233089;233090;233091;233092;233093;233094;233095;233096;233097;233098;233099;233100;233101;233102;233103;233104;233105;233106;233107;233108;233109;233110;233111;233112;233113;233114;233115;233116;233117;233118;233119;233120;233121;233122;233123;233124;233125;233126;233127;233128;233129;233130;233131;233132;233133;233134;233135;233136;233137;233138;233139 233137 71 TTDVTGTIELPEGVEMVMPGDNIK Oxidation (M) 2561.2241 0.2240708 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 5 2 2 1 2 3 3 5 5 3 3 3 4 49.859 48.492 2;3 7.381E-60 24320 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 255.91 243.76 2163500000 115090000 157660000 143070000 4335100 4210900 2258500 90118000 123570000 130210000 0 0 0 376700000 304530000 191330000 0 0 0 119000000 121740000 279710000 0 0 0 20509 1048 19862 380805;380806;380807;380808;380809;380810;380811;380812;380813;380814;380815;380816;380817;380818;380819;380820;380821;380822;380823;380824;380825;380826;380827;380828;380829;380830;380831;380832;380833;380834;380835;380836;380837;380838;380839;380840;380841;380842;380843;380844;380845;380846;380847;380848;380849;380850;380851;380852;380853 233140;233141;233142;233143;233144;233145;233146;233147;233148;233149;233150;233151;233152;233153;233154;233155;233156;233157;233158;233159;233160;233161;233162;233163;233164;233165;233166;233167;233168;233169;233170;233171;233172;233173;233174;233175;233176;233177;233178;233179;233180;233181 233146 476;477 40 TTDVTGTIELPEGVEMVMPGDNIK 2 Oxidation (M) 2577.219 0.21898542 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 2 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 44.233 42.788 2 1.6471E-21 20864 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.4 165.08 52708000 0 0 5097500 0 0 0 0 0 8346200 0 0 0 5731200 6520200 4566300 0 0 0 7313900 8055300 7077700 0 0 0 20510 1048 19862 380854;380855;380856;380857;380858;380859;380860;380861 233182;233183;233184 233183 476;477 3 TTEIQAQLDDLDR Unmodified 1516.7369 0.73691561 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 34.828 33.31 2 6.9092E-13 15380 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 199.09 190.51 821220000 0 0 0 0 0 0 63082000 60588000 56035000 0 0 0 69007000 76834000 68667000 0 0 0 139750000 156940000 130320000 0 0 0 20511 1124 19863 380862;380863;380864;380865;380866;380867;380868;380869;380870 233185;233186;233187;233188;233189;233190;233191;233192;233193 233191 9 TTENMLK Unmodified 835.41095 0.41095378 168 P07654 pstA Phosphate transport system permease protein PstA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 12.497 13.353 2 0.0054511 3907 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 94.163 70.368 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20512 168 19864 380871;380872;380873 233194;233195;233196 233195 3 TTEQSWQQQTR Unmodified 1391.643 0.64295564 1329 P29131 ftsN Cell division protein FtsN yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.167 14.035 2 0.0010286 4266 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.974 57.286 40324000 5061300 3211700 0 0 0 0 3052500 3243600 3717700 0 0 0 3492200 3118100 2922600 0 0 0 3930000 4604500 3969700 0 0 0 20513 1329 19865 380874;380875;380876;380877;380878;380879;380880;380881;380882;380883;380884;380885 233197;233198 233198 1 TTESQIHR Unmodified 970.48321 0.48320752 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1 1 2 1 1 7.3792 8.1952 2 1.6927E-06 1833 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 191.03 183.74 135100000 39714000 30672000 42535000 0 0 0 0 0 0 0 0 0 2527000 2263300 3940700 0 0 0 3956100 4023700 5465100 0 0 0 20514 44 19866 380886;380887;380888;380889;380890;380891;380892;380893;380894;380895;380896;380897;380898;380899 233199;233200;233201;233202;233203;233204;233205;233206;233207 233202 9 TTESQTHR Unmodified 958.44682 0.44682202 45 P00888 aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 4.9851 5.8009 2 5.5033E-05 779 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 170.06 165.7 56485000 6627500 5761500 4538800 0 0 0 1364200 682880 654110 0 0 0 5154600 3691700 4414900 0 0 0 7351600 8730800 7512000 0 0 0 20515 45 19867 380900;380901;380902;380903;380904;380905;380906;380907;380908;380909;380910;380911 233208;233209;233210;233211;233212;233213;233214;233215;233216 233210 9 TTESQVHR Unmodified 956.46756 0.46755746 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6.7537 7.3642 2 3.7091E-09 1488 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 208.61 205.21 569890000 75187000 79944000 62318000 6774100 4486000 6399200 35715000 36583000 35775000 11739000 9901400 11180000 30964000 28335000 25919000 1433300 2007600 1629500 34751000 28928000 27544000 3369900 4611400 4395700 20516 639 19868 380912;380913;380914;380915;380916;380917;380918;380919;380920;380921;380922;380923;380924;380925;380926;380927;380928;380929;380930;380931;380932;380933;380934;380935 233217;233218;233219;233220;233221;233222;233223;233224 233223 8 TTFAAAAK Unmodified 779.41775 0.41775372 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 12.229 13.049 2 0.026688 3480 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 76.035 59.867 886800000 102200000 88208000 96278000 0 0 0 139430000 125930000 0 0 0 0 0 73688000 77657000 0 0 0 0 93348000 90058000 0 0 0 20517 688 19869 380936;380937;380938;380939;380940;380941;380942;380943;380944 233225;233226;233227;233228;233229;233230 233230 1 TTFADVAGCDEAK Unmodified 1383.5976 0.59764493 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.26 22.541 2 1.5854E-06 10002 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.89 133.89 91149000 3381500 2737600 2507800 0 0 901640 8590800 10731000 10902000 0 0 0 7463500 7532100 5906200 0 0 0 10321000 11208000 8966900 0 0 0 20518 595 19870 380945;380946;380947;380948;380949;380950;380951;380952;380953;380954;380955;380956;380957 233231;233232;233233;233234;233235;233236;233237;233238;233239 233231 9 TTFADVAGCDEAKEEVAELVEYLR Unmodified 2714.2745 0.27452647 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.597 53.105 3 1.8454E-30 25985 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 188.69 185.48 583130000 0 0 0 0 0 0 68654000 65789000 1901700 26897000 14575000 19160000 72126000 62683000 0 0 0 0 82907000 82076000 86363000 0 0 0 20519 595 19871 380958;380959;380960;380961;380962;380963;380964;380965;380966;380967;380968 233240;233241;233242;233243;233244;233245;233246 233244 7 TTFADVAGCDEAKEEVAELVEYLREPSR Unmodified 3183.503 0.50302285 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.657 52.625 4 1.7859E-11 21095 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 130.23 128.07 319090000 0 0 0 18107000 18609000 17256000 0 0 0 58309000 48829000 47267000 0 0 0 11700000 11693000 24980000 0 0 0 20750000 23497000 18090000 20520 595 19872 380969;380970;380971;380972;380973;380974;380975;380976;380977;380978;380979;380980 233247;233248;233249;233250;233251;233252;233253;233254;233255;233256;233257 233251 10 TTFSLEPDAAFGVPSPDLIQYFSR Unmodified 2657.3013 0.30133356 871 P0AEM0 fkpB FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.52 54.058 2 2.7038E-06 25693 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 98.408 92.504 136030000 11848000 11368000 10786000 0 0 0 7263900 10722000 0 0 0 0 10395000 13110000 7959400 0 0 0 19356000 14130000 19091000 0 0 0 20521 871 19873 380981;380982;380983;380984;380985;380986;380987;380988;380989;380990;380991 233258 233258 1 TTFTIDCR Unmodified 1012.4648 0.46478027 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 22.023 21.88 2 5.8499E-05 6697 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 169.37 165.02 71508000 2194300 0 0 14652000 14720000 13037000 0 0 0 0 0 0 0 2951800 0 0 0 0 4109700 6053600 0 4835200 4740900 4214200 20522 1904 19874 380992;380993;380994;380995;380996;380997;380998;380999;381000;381001 233259;233260;233261;233262;233263;233264 233263 6 TTGATDFTR Unmodified 968.45632 0.45632407 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 13.474 14.281 2 0.0015282 4418 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 88.37 78.62 117330000 17885000 17680000 14388000 0 0 0 7961400 10361000 12656000 0 0 0 0 0 0 0 0 0 13815000 11139000 11447000 0 0 0 20523 1006 19875 381002;381003;381004;381005;381006;381007;381008;381009;381010 233265;233266 233265 2 TTGEHEVSFQVHSEVFAK Unmodified 2030.9698 0.96976909 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 3 3 2 2 2 24.454 23.468 3;4 1.1477E-36 10061 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 192.16 171.99 1014000000 168230000 142730000 35754000 14715000 11518000 13786000 8641700 4625900 4729500 18903000 13476000 13841000 62739000 60145000 48614000 0 0 730480 96894000 125540000 124870000 14587000 13302000 15667000 20524 364 19876 381011;381012;381013;381014;381015;381016;381017;381018;381019;381020;381021;381022;381023;381024;381025;381026;381027;381028;381029;381030;381031;381032;381033;381034;381035;381036;381037;381038;381039;381040;381041;381042;381043;381044;381045;381046;381047;381048;381049;381050;381051;381052 233267;233268;233269;233270;233271;233272;233273;233274;233275;233276;233277;233278;233279;233280;233281;233282;233283;233284;233285;233286;233287;233288;233289;233290;233291;233292;233293;233294;233295;233296;233297;233298;233299;233300;233301;233302;233303;233304;233305;233306;233307 233282 41 TTGIDIAGK Unmodified 874.476 0.47599688 1043 P0C0U4 rimK Ribosomal protein S6--L-glutamate ligase yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 17.872 18.163 2 0.0031935 5271 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 82.452 61.898 16405000 0 2037000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5136200 3623900 5607600 20525 1043 19877 381053;381054;381055;381056 233308 233308 1 TTGISVSTR Unmodified 920.49271 0.49270958 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.794 14.519 2 5.7115E-05 4583 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 147.19 134.8 750150000 90168000 72389000 63331000 1238900 1692900 1452600 72461000 62118000 62976000 0 2481200 2010200 49547000 45889000 44320000 0 499470 535430 60348000 59269000 57428000 0 0 0 20526 948 19878 381057;381058;381059;381060;381061;381062;381063;381064;381065;381066;381067;381068;381069;381070;381071;381072;381073;381074;381075 233309;233310;233311;233312;233313 233310 3 TTGLDSDQGPTAAK Unmodified 1360.647 0.64703797 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 13.441 14.24 2 2.1366E-11 4367 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 208.84 196.61 215750000 68221000 76416000 71117000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20527 774 19879 381076;381077;381078 233314;233315;233316 233315 3 TTGLHAAGK Unmodified 854.46102 0.46101552 892 P0AEW9 fruK 1-phosphofructokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 7.2527 8.0974 2 0.0050962 1843 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.692 72.08 110420000 15110000 13952000 16749000 0 0 0 840440 878920 0 0 0 0 10084000 8225100 11410000 0 0 0 9792600 11068000 12313000 0 0 0 20528 892 19880 381079;381080;381081;381082;381083;381084;381085;381086;381087;381088;381089;381090 233317;233318;233319;233320;233321;233322;233323;233324;233325;233326;233327 233322 11 TTGTLADGCDVSRPGNLTYEIVR Unmodified 2494.2122 0.21220098 1015 P0AGF6 tdcB L-threonine dehydratase catabolic TdcB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 34.792 33.335 3 6.2632E-10 15831 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.88 111.08 60953000 0 0 0 0 0 0 0 3483900 3425800 0 0 0 6621300 6153900 5566000 0 0 0 14882000 10364000 10456000 0 0 0 20529 1015 19881 381091;381092;381093;381094;381095;381096;381097;381098 233328 233328 1 TTGWIHR Unmodified 869.45079 0.45078518 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 13.128 13.828 2 0.0071055 4242 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 92.692 80.14 37809000 11168000 14004000 12637000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20530 1554 19882 381099;381100;381101 233329;233330;233331 233329 3 TTHILEVAPEAQVVAVDIDEQR Unmodified 2432.2547 0.25471772 1449 P36929 rsmB Ribosomal RNA small subunit methyltransferase B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.534 40.58 3 4.6591E-10 19748 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.543 96.218 94803000 14952000 15853000 15503000 0 0 0 6054300 7250700 7645900 0 2434200 4059200 0 0 0 0 0 0 7742000 8368500 0 2831700 0 2109000 20531 1449 19883 381102;381103;381104;381105;381106;381107;381108;381109;381110;381111;381112;381113 233332;233333 233333 1 TTIMNFR Unmodified 881.44292 0.44292261 0 A0A385XJE6;P76071;P0CE58;P0CE57;P0CE56;P0CE55;P0CE54;P0CE53;P0CE52;P0CE51;P0CE50;P0CE49 insH5;insH11;insH10;insH9;insH8;insH7;insH6;insH4;insH3;insH2;insH1 Transposase InsH for insertion sequence element IS5Y;Transposase InsH for insertion sequence element IS5T;Transposase InsH for insertion sequence element IS5R;Transposase InsH for insertion sequence element IS5LO;Transposase InsH for insertion sequence element IS5K;Transposase InsH for insertion sequence element IS5I;Transposase InsH for insertion sequence element IS5H;Transposase InsH for insertion sequence element IS5F;Transposase InsH for insertion sequence element IS5D;Transposase InsH for insertion sequence element IS5B;Transposase InsH for insertion sequence element IS5A yes no 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.304 24.194 2 0.0063007 8535 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 96.048 79.121 67779000 5258100 0 5163000 0 0 0 6855100 5604100 5191100 0 4034700 4254300 0 3525600 0 0 0 956810 7921200 7693200 8357300 2964300 0 0 20532 0 19884 381114;381115;381116;381117;381118;381119;381120;381121;381122;381123;381124;381125;381126 233334 233334 1 TTINLVPENEVLNVLEGEDAETNALR Unmodified 2852.4403 0.44034624 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 54.846 53.435 2 0.080431 25324 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 42.338 29.783 100100000 0 0 0 0 0 0 0 0 0 0 0 0 19822000 17676000 14962000 0 0 0 0 28075000 19561000 0 0 0 20533 124 19885 381127;381128;381129;381130;381131 233335;233336 233336 0 TTIPDYFAK Unmodified 1054.5335 0.53351176 472 P0A8Y3 yihX Alpha-D-glucose-1-phosphate phosphatase YihX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.709 31.323 2 0.0019717 14835 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.794 78.453 247180000 35492000 24858000 25304000 0 0 0 19967000 24098000 19573000 0 0 0 15261000 13858000 13463000 0 0 0 18164000 18182000 18960000 0 0 0 20534 472 19886 381132;381133;381134;381135;381136;381137;381138;381139;381140;381141;381142;381143 233337;233338;233339;233340;233341 233339 4 TTIVDSNLPVAR Unmodified 1284.7038 0.70376498 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 29.126 27.854 2 1.1038E-16 13162 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 204.07 188.81 573750000 93486000 72459000 72889000 0 220420 0 44106000 48309000 41502000 0 0 0 36730000 36724000 33306000 0 0 0 30116000 35509000 28389000 0 0 0 20535 1508 19887 381144;381145;381146;381147;381148;381149;381150;381151;381152;381153;381154;381155;381156 233342;233343;233344;233345;233346;233347;233348;233349;233350;233351 233343 10 TTIVSVR Unmodified 774.45995 0.45995289 329 P0A7B8 hslV ATP-dependent protease subunit HslV yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 15.384 16.261 2 0.024258 5678 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.029 61.92 1013900000 0 0 0 2200100 2575800 2262500 204320000 219030000 191960000 0 0 0 0 118190000 112840000 0 0 0 0 160570000 0 0 0 0 20536 329 19888 381157;381158;381159;381160;381161;381162;381163;381164;381165 233352;233353 233352 0 TTLAEVIAR Unmodified 972.5604 0.56039521 619 P0AAZ4 rarA Replication-associated recombination protein A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.95 28.576 2 0.054753 13577 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 57.96 33.037 71779000 8048500 8503200 0 0 0 0 6929800 5390800 6734800 0 0 0 4186700 3988800 3391400 0 0 0 9883000 6663700 8057900 0 0 0 20537 619 19889 381166;381167;381168;381169;381170;381171;381172;381173;381174;381175;381176 233354;233355;233356 233355 1 TTLEATVK Unmodified 861.48075 0.48074791 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.653 14.564 2 0.0011803 4646 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.01 95.568 593680000 97251000 102210000 92464000 1074700 1151500 1083300 45112000 52187000 46531000 0 0 0 24258000 24960000 20423000 0 0 0 31938000 28750000 24280000 0 0 0 20538 218 19890 381177;381178;381179;381180;381181;381182;381183;381184;381185;381186;381187;381188;381189;381190;381191 233357;233358;233359;233360;233361 233360 5 TTLFGNVYQFK Unmodified 1316.6765 0.6764876 866 P0AEJ6 eutB Ethanolamine ammonia-lyase heavy chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.468 40.745 2 0.00011888 20230 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 116.25 107.93 104720000 13624000 13850000 14841000 1866000 1260300 0 5418300 6786500 6968900 0 0 0 5842600 4777500 4842100 0 0 0 7923200 7072200 7097300 0 0 2547300 20539 866 19891 381192;381193;381194;381195;381196;381197;381198;381199;381200;381201;381202;381203;381204;381205;381206 233362;233363 233362 2 TTLFIPVR Unmodified 945.56475 0.56475231 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.6 34.813 2 0.0012277 17256 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.61 105.13 111590000 5544500 5651900 5964100 1288400 1037100 0 10470000 12548000 10852000 6664500 7772200 7534100 3149200 3841600 4366300 0 0 0 6338900 5785300 4269400 2550800 2517900 3447900 20540 1877 19892 381207;381208;381209;381210;381211;381212;381213;381214;381215;381216;381217;381218;381219;381220;381221;381222;381223;381224;381225;381226 233364;233365;233366;233367;233368 233364 5 TTLFNQLTGSR Unmodified 1236.6463 0.64625011 1431 P33650 feoB Ferrous iron transport protein B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.017 34.189 2 0.0026202 13199 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 70.908 54.132 47386000 0 0 0 1258700 1207000 1018700 0 4353000 0 1534700 1872900 1490800 3468300 4285100 2627800 0 0 0 5388700 7276700 8340500 1749400 1514100 0 20541 1431 19893 381227;381228;381229;381230;381231;381232;381233;381234;381235;381236;381237;381238;381239;381240;381241 233369 233369 0 TTLISQWAAGK Unmodified 1174.6346 0.63462279 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.696 32.316 2 1.8397E-05 12672 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 138.1 130.88 107180000 0 3270900 0 0 0 0 11392000 11114000 8197400 7123700 5851700 6886200 0 7751600 7676600 2790700 1275400 1920000 8634300 10901000 12392000 0 0 0 20542 143 19894 381242;381243;381244;381245;381246;381247;381248;381249;381250;381251;381252;381253;381254;381255;381256;381257 233370;233371;233372;233373;233374 233371 4 TTLLMATGQQAGALVEALLVLR Unmodified 2268.2875 0.28753818 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By MS/MS 1 55.835 54.477 2 0.033162 26820 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 51.193 48.534 8809300 0 0 8809300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20543 529 19895 381258 233375 233375 0 TTLLQAITGVNADR Unmodified 1471.7995 0.79945628 1093 P14081 selB Selenocysteine-specific elongation factor yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 46.756 45.517 2 0.00019926 22191 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83.397 69.239 14841000 5146200 5297600 4396800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20544 1093 19896 381259;381260;381261 233376 233376 1 TTLLTETLMR Unmodified 1177.6377 0.63765925 603 P0AAN3 hypB Hydrogenase isoenzymes nickel incorporation protein HypB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.442 36.76 2 0.00013042 18397 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.68 122.37 319330000 2821000 12598000 11215000 0 424890 482430 36458000 43317000 43670000 0 0 0 29413000 27809000 29926000 0 0 0 31456000 27540000 22201000 0 0 0 20545 603 19897 381262;381263;381264;381265;381266;381267;381268;381269;381270;381271;381272;381273;381274;381275 233377;233378;233379 233377 3 TTLPDSAHVASASTIPNR Unmodified 1836.933 0.93298965 1776 P75818 ybjP Uncharacterized lipoprotein YbjP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 3 2 2 2 2 2 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 22.1 21.921 2;3 1.154E-09 9030 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.06 113.2 279050000 41508000 33177000 33950000 8418900 9813600 7320300 17543000 13192000 12928000 16269000 10152000 14531000 6208200 4502400 5311700 1581100 1302200 1479100 13666000 9866700 10642000 2540300 1481200 1665000 20546 1776 19898 381276;381277;381278;381279;381280;381281;381282;381283;381284;381285;381286;381287;381288;381289;381290;381291;381292;381293;381294;381295;381296;381297;381298;381299;381300;381301;381302;381303;381304;381305;381306;381307;381308 233380;233381;233382;233383;233384;233385;233386;233387;233388;233389;233390;233391;233392;233393;233394;233395;233396 233391 17 TTLSTDPK Unmodified 861.44436 0.4443624 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 11.474 12.393 2 0.0035665 3279 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.296 74.075 1921000000 393670000 362550000 289290000 1708900 1602200 1196100 0 0 0 0 0 0 0 172670000 216900000 0 0 0 0 249450000 231950000 0 0 0 20547 1195 19899 381309;381310;381311;381312;381313;381314;381315;381316;381317;381318;381319 233397;233398 233397 2 TTLTAAITTVLAK Unmodified 1302.7759 0.7758673 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 12 9 4 4 3 5 6 5 2 3 2 6 8 6 3 3 2 12 10 13 3 2 2 48.444 47.124 2;3 3.1619E-07 21131 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 142.1 135.44 83545000000 6598000000 6585800000 5993100000 185630000 172990000 169520000 7100800000 6893000000 6223900000 99507000 96112000 97415000 8018900000 7146100000 5807600000 85568000 62909000 82952000 7473600000 7417400000 6960000000 88555000 97463000 87680000 20548 1048 19900 381320;381321;381322;381323;381324;381325;381326;381327;381328;381329;381330;381331;381332;381333;381334;381335;381336;381337;381338;381339;381340;381341;381342;381343;381344;381345;381346;381347;381348;381349;381350;381351;381352;381353;381354;381355;381356;381357;381358;381359;381360;381361;381362;381363;381364;381365;381366;381367;381368;381369;381370;381371;381372;381373;381374;381375;381376;381377;381378;381379;381380;381381;381382;381383;381384;381385;381386;381387;381388;381389;381390;381391;381392;381393;381394;381395;381396;381397;381398;381399;381400;381401;381402;381403;381404;381405;381406;381407;381408;381409;381410;381411;381412;381413;381414;381415;381416;381417;381418;381419;381420;381421;381422;381423;381424;381425;381426;381427;381428;381429;381430;381431;381432;381433;381434;381435;381436;381437;381438;381439;381440;381441;381442;381443;381444;381445;381446;381447;381448;381449;381450;381451;381452;381453;381454 233399;233400;233401;233402;233403;233404;233405;233406;233407;233408;233409;233410;233411;233412;233413;233414;233415;233416;233417;233418;233419;233420;233421;233422;233423;233424;233425;233426;233427;233428;233429;233430;233431;233432;233433;233434;233435;233436;233437;233438;233439;233440;233441;233442;233443;233444;233445;233446;233447;233448;233449;233450;233451;233452;233453;233454;233455;233456;233457;233458;233459;233460;233461;233462;233463;233464;233465;233466;233467;233468;233469;233470;233471;233472;233473;233474;233475;233476;233477;233478;233479;233480;233481;233482;233483;233484;233485;233486;233487;233488;233489;233490;233491;233492;233493;233494;233495;233496;233497;233498;233499;233500;233501;233502;233503;233504;233505;233506;233507;233508;233509;233510;233511;233512;233513;233514;233515;233516;233517;233518;233519;233520;233521;233522;233523;233524;233525;233526;233527;233528;233529;233530;233531;233532;233533;233534;233535;233536;233537;233538;233539;233540;233541;233542;233543;233544;233545;233546;233547;233548;233549;233550;233551;233552;233553;233554;233555;233556;233557;233558;233559;233560;233561;233562;233563;233564;233565;233566;233567;233568;233569;233570;233571;233572;233573;233574;233575;233576;233577;233578;233579;233580;233581;233582;233583;233584;233585;233586;233587;233588;233589;233590;233591;233592;233593;233594;233595;233596;233597;233598;233599;233600;233601;233602;233603;233604;233605;233606;233607;233608;233609;233610;233611;233612;233613;233614;233615;233616;233617;233618;233619;233620;233621;233622;233623;233624;233625;233626;233627;233628;233629;233630;233631;233632;233633;233634;233635;233636;233637;233638;233639;233640;233641;233642;233643;233644 233613 246 TTLTLQVIAAAQR Unmodified 1384.8038 0.80381338 343 P0A7G6 recA Protein RecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 3 3 3 3 2 3 3 5 2 2 2 3 2 2 3 2 2 4 3 3 40.173 38.471 2;3 1.5017E-12 15593 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 240.38 218.63 913680000 28772000 36883000 28897000 20364000 21873000 18330000 55167000 53419000 45924000 141860000 79066000 87092000 26576000 20316000 22722000 17308000 11336000 12441000 35718000 34100000 35717000 29661000 26114000 24023000 20549 343 19901 381455;381456;381457;381458;381459;381460;381461;381462;381463;381464;381465;381466;381467;381468;381469;381470;381471;381472;381473;381474;381475;381476;381477;381478;381479;381480;381481;381482;381483;381484;381485;381486;381487;381488;381489;381490;381491;381492;381493;381494;381495;381496;381497;381498;381499;381500;381501;381502;381503;381504;381505;381506;381507;381508;381509;381510;381511;381512;381513;381514;381515;381516;381517;381518;381519 233645;233646;233647;233648;233649;233650;233651;233652;233653;233654;233655;233656;233657;233658;233659;233660;233661;233662;233663;233664;233665;233666;233667;233668;233669;233670;233671;233672;233673;233674;233675;233676;233677;233678;233679;233680;233681;233682;233683;233684;233685;233686;233687;233688;233689;233690;233691;233692;233693;233694;233695;233696;233697 233654 51 TTLYTANR Unmodified 938.48214 0.48214489 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.246 14.112 2 0.0009869 4098 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.72 105.8 428490000 31407000 32776000 31257000 0 0 0 50269000 47005000 50121000 0 0 0 27125000 28734000 24743000 0 0 0 42792000 33631000 28631000 0 0 0 20550 473 19902 381520;381521;381522;381523;381524;381525;381526;381527;381528;381529;381530;381531 233698;233699;233700;233701 233699 3 TTMAADSSSTVMELLK Unmodified 1683.8059 0.80592315 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.028 43.522 2 4.088E-08 15415 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 136.27 131.37 77287000 4267200 4790500 2750100 7003900 7974100 8207100 2898700 4215500 2791500 0 0 0 3131400 3434000 3939600 0 0 0 4842500 3651000 4106800 9283200 0 0 20551 1933 19903 381532;381533;381534;381535;381536;381537;381538;381539;381540;381541;381542;381543;381544;381545;381546;381547 233702;233703;233704;233705;233706 233704 3 TTMNPFLVQSTLPYLAPHFDQIANHHYR Unmodified 3310.6346 0.63458657 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.93 47.582 5 2.0225E-07 23283 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.176 91.271 127250000 18115000 20627000 18875000 0 0 0 12289000 9167400 8623300 0 0 0 0 5537100 7103000 0 0 0 7330500 10180000 9398000 0 0 0 20552 1233 19904 381548;381549;381550;381551;381552;381553;381554;381555;381556;381557;381558 233707 233707 1 TTNHDVK Unmodified 813.39808 0.39808091 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 2 1 2 4.8778 5.6943 2 0.0056465 799 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 93.561 75.999 333340000 41729000 46289000 41729000 0 0 0 0 0 9036700 0 0 0 46521000 44254000 39941000 0 0 0 2849700 3124400 57865000 0 0 0 20553 638 19905 381559;381560;381561;381562;381563;381564;381565;381566;381567;381568;381569;381570 233708;233709;233710;233711;233712;233713 233708 2 TTNTHTLQIEEILELLPHR Unmodified 2257.2066 0.20664532 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 51.569 50.363 3;4 1.1886E-17 18371 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 163.44 159.09 938410000 36691000 31588000 35728000 11277000 10645000 9132700 46665000 42124000 40597000 60156000 47714000 68984000 43660000 40830000 33335000 41919000 58033000 70525000 44091000 38715000 51736000 53062000 9942200 11261000 20554 272 19906 381571;381572;381573;381574;381575;381576;381577;381578;381579;381580;381581;381582;381583;381584;381585;381586;381587;381588;381589;381590;381591;381592;381593;381594;381595;381596;381597;381598;381599;381600;381601 233714;233715;233716;233717;233718;233719;233720;233721;233722;233723;233724;233725;233726;233727;233728;233729;233730;233731;233732;233733;233734;233735;233736;233737;233738;233739;233740 233716 27 TTNYIFVTGGVVSSLGK Unmodified 1741.9251 0.92505073 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 2 2 2 47.073 45.671 2;3 1.6476E-14 22630 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 176.91 172.37 411580000 19098000 18483000 13480000 0 0 0 46927000 46011000 45919000 0 0 0 36026000 31070000 31362000 0 0 0 40674000 43531000 39001000 0 0 0 20555 337 19907 381602;381603;381604;381605;381606;381607;381608;381609;381610;381611;381612;381613;381614;381615;381616;381617;381618;381619;381620;381621;381622;381623 233741;233742;233743;233744;233745;233746;233747;233748;233749;233750;233751;233752;233753;233754;233755;233756 233742 16 TTNYYHPESDCGICWNDER Unmodified 2415.9485 0.94845807 1490 P37745 rfbC dTDP-4-dehydrorhamnose 3,5-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.93 26.783 3 4.9297E-14 12247 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 139.02 139.02 654790000 37718000 30262000 25647000 0 0 0 42069000 44674000 53233000 0 0 0 39162000 41706000 51192000 0 0 0 91859000 93505000 103760000 0 0 0 20556 1490 19908 381624;381625;381626;381627;381628;381629;381630;381631;381632;381633;381634;381635 233757;233758;233759;233760;233761;233762;233763;233764;233765;233766;233767;233768 233763 12 TTPADIAALK Unmodified 999.56006 0.56006086 1977 Q47690 mmuM Homocysteine S-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 25.714 24.809 2 0.00049378 11059 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.442 73.058 34170000 12592000 11633000 9944500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20557 1977 19909 381636;381637;381638 233769;233770;233771 233770 3 TTPPAVLLAR Unmodified 1037.6233 0.62332982 1605 P52108 rstA Transcriptional regulatory protein RstA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.648 28.217 2 0.00065997 12385 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 89.296 69.592 391030000 24785000 19850000 21877000 1998200 1657300 2001400 29695000 34702000 28626000 5207700 4249300 5688800 25270000 25369000 24712000 1971200 0 0 40869000 38628000 43700000 2984700 4713100 2470600 20558 1605 19910 381639;381640;381641;381642;381643;381644;381645;381646;381647;381648;381649;381650;381651;381652;381653;381654;381655;381656;381657;381658;381659;381660 233772;233773;233774;233775;233776;233777;233778;233779;233780;233781;233782 233782 11 TTPSIIAYTQDGETLVGQPAK Unmodified 2189.1216 0.12157828 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 42.82 40.96 2;3 1.6622E-52 19967 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 258.41 246.5 8034300000 749680000 647650000 660570000 7694000 6373000 6591600 746760000 723980000 687270000 52830000 50818000 44172000 518180000 454700000 494200000 0 0 0 744620000 701460000 719920000 8352000 0 8476900 20559 293 19911 381661;381662;381663;381664;381665;381666;381667;381668;381669;381670;381671;381672;381673;381674;381675;381676;381677;381678;381679;381680;381681;381682;381683;381684;381685;381686;381687;381688;381689;381690;381691;381692;381693;381694;381695;381696;381697;381698;381699 233783;233784;233785;233786;233787;233788;233789;233790;233791;233792;233793;233794;233795;233796;233797;233798;233799;233800;233801;233802;233803;233804;233805;233806;233807;233808;233809;233810;233811;233812;233813;233814;233815;233816 233799 34 TTPSIIAYTQDGETLVGQPAKR Unmodified 2345.2227 0.22268931 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 3 3 3 1 1 1 2 1 2 3 2 2 3 3 3 37.355 35.614 2;3;4 7.254E-53 14366 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 306.27 283.18 2152900000 64173000 64227000 60803000 47240000 60227000 54772000 85195000 79468000 77870000 320670000 284010000 293040000 39241000 30101000 35042000 31889000 23053000 25284000 85505000 81932000 70188000 87600000 70268000 81102000 20560 293 19912 381700;381701;381702;381703;381704;381705;381706;381707;381708;381709;381710;381711;381712;381713;381714;381715;381716;381717;381718;381719;381720;381721;381722;381723;381724;381725;381726;381727;381728;381729;381730;381731;381732;381733;381734;381735;381736;381737;381738;381739;381740;381741;381742;381743;381744;381745;381746;381747;381748;381749;381750;381751;381752;381753 233817;233818;233819;233820;233821;233822;233823;233824;233825;233826;233827;233828;233829;233830;233831;233832;233833;233834;233835;233836;233837;233838;233839;233840;233841;233842;233843;233844;233845;233846;233847;233848;233849;233850;233851;233852;233853;233854;233855;233856;233857;233858 233821 42 TTPTPQPGSDEINR Unmodified 1511.7216 0.72159989 1368 P31455 yidR Uncharacterized protein YidR yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.635 16.442 2 9.5941E-05 5685 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.001 81.519 113180000 12331000 12908000 10254000 0 0 0 9898400 11864000 9020800 0 0 0 7945500 7787100 5524300 0 0 0 8357300 9112600 8178100 0 0 0 20561 1368 19913 381754;381755;381756;381757;381758;381759;381760;381761;381762;381763;381764;381765 233859;233860;233861;233862 233861 3 TTPWLEEAR Unmodified 1101.5455 0.54547343 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.833 26.928 2 0.050136 8508 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 63.419 60.995 225140000 19541000 17562000 13955000 1068600 1021200 0 0 0 0 1448100 0 0 4727800 3987800 0 60962000 42540000 51494000 0 0 6828800 0 0 0 20562 1249 19914 381766;381767;381768;381769;381770;381771;381772;381773;381774;381775;381776;381777 233863;233864 233864 2 TTQAFSQDCR Unmodified 1212.5193 0.51933503 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 12.29 13.127 2 7.6059E-07 3814 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 172.25 170.92 45751000 13033000 0 13472000 0 0 0 0 0 0 0 0 0 0 0 5757000 0 0 0 4553600 4194800 4741400 0 0 0 20563 118 19915 381778;381779;381780;381781;381782;381783 233865;233866 233865 2 TTQVPPSALLPLNPEQLAR Unmodified 2044.1317 0.13168946 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 4 2 1 2 2 2 1 2 2 2 2 2 2 1 1 50.447 49.063 2;3 9.4858E-15 23719 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.98 143.59 663150000 84910000 102730000 44834000 0 0 1438900 52379000 54981000 43994000 0 0 3018900 35851000 32522000 36196000 0 0 0 59775000 53767000 52601000 2604200 1546400 0 20564 1503 19916 381784;381785;381786;381787;381788;381789;381790;381791;381792;381793;381794;381795;381796;381797;381798;381799;381800;381801;381802;381803;381804;381805;381806;381807;381808;381809;381810;381811;381812;381813;381814 233867;233868;233869;233870;233871;233872;233873;233874;233875;233876;233877;233878;233879;233880;233881;233882;233883;233884;233885;233886;233887;233888;233889;233890;233891;233892;233893;233894;233895 233889 26 TTQYGFFIDSSR Unmodified 1420.6623 0.6622941 1153;598 P18776;P0AAJ1 dmsB;ynfG Anaerobic dimethyl sulfoxide reductase chain B;Probable anaerobic dimethyl sulfoxide reductase chain YnfG no no 0 0 0 By MS/MS By MS/MS 1 1 39.936 37.21 2 0.0086444 14793 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 80.24 75.774 5125100 0 0 0 0 0 0 0 0 0 2544300 2580800 0 0 0 0 0 0 0 0 0 0 0 0 0 20565 1153;598 19917 381815;381816 233896;233897 233897 2 TTSGNVSAPAQSSQDGAPAEPQ Unmodified 2098.9403 0.94031945 1827 P76172 ynfD Uncharacterized protein YnfD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 19.404 19.906 2;3 0.0085123 7682 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.898 65.288 280970000 34161000 41423000 30688000 496770 0 409830 27716000 39586000 33080000 0 0 0 14398000 10192000 10991000 0 0 0 9403300 12562000 15866000 0 0 0 20566 1827 19918 381817;381818;381819;381820;381821;381822;381823;381824;381825;381826;381827;381828;381829;381830;381831;381832;381833;381834;381835;381836;381837;381838;381839;381840;381841;381842 233898;233899;233900;233901;233902;233903;233904;233905;233906 233901 9 TTSIVPVDLNSLMFK Unmodified 1663.8855 0.8854941 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.364 52.916 2 2.3595E-08 26081 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 169.82 162.93 404540000 94091000 83289000 73761000 0 0 0 23762000 21419000 19878000 0 0 0 14206000 13242000 14000000 0 0 0 18632000 15338000 12921000 0 0 0 20567 1091 19919 381843;381844;381845;381846;381847;381848;381849;381850;381851;381852;381853;381854 233907;233908;233909;233910 233909 4 TTSLYVTHDQVEAMTLAQR Unmodified 2163.063 0.063017547 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 2 2 2 2 1 1 2 2 2 2 2 2 33.822 32.366 2;3 2.3313E-55 15404 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 313.53 308.25 652400000 0 0 0 2151300 0 1313000 35649000 32041000 40857000 17071000 14018000 11724000 43351000 41991000 43721000 9365100 6283900 6810900 89909000 93115000 85595000 22966000 26418000 28055000 20568 1064 19920 381855;381856;381857;381858;381859;381860;381861;381862;381863;381864;381865;381866;381867;381868;381869;381870;381871;381872;381873;381874;381875;381876;381877;381878;381879;381880;381881;381882;381883;381884;381885 233911;233912;233913;233914;233915;233916;233917;233918;233919;233920;233921;233922;233923;233924;233925;233926;233927;233928;233929;233930;233931;233932;233933;233934 233929 24 TTSSAAIATGLAQK Unmodified 1318.7092 0.70924429 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 20.754 20.936 2;3 1.258E-12 8505 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 218.49 212.46 2610200000 246540000 249290000 222210000 14181000 16942000 11288000 126370000 188340000 181740000 74759000 67835000 56860000 194100000 163990000 140130000 13150000 8084500 8785200 212790000 192740000 166310000 21331000 17474000 14973000 20569 899 19921 381886;381887;381888;381889;381890;381891;381892;381893;381894;381895;381896;381897;381898;381899;381900;381901;381902;381903;381904;381905;381906;381907;381908;381909;381910;381911;381912;381913;381914;381915;381916;381917;381918;381919;381920;381921;381922;381923;381924;381925;381926;381927;381928;381929;381930 233935;233936;233937;233938;233939;233940;233941;233942;233943;233944;233945;233946;233947;233948;233949;233950;233951;233952;233953;233954;233955;233956;233957;233958;233959;233960;233961;233962;233963;233964;233965;233966;233967;233968;233969 233945 35 TTSSSTRR Unmodified 894.45191 0.45190739 11 CON__P04264 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 8.1469 8.5315 2 0.013588 1313 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 77.741 43.488 29328000 0 0 0 57835 0 0 0 0 0 0 9061200 10346000 0 0 0 0 468820 0 0 0 0 2595000 3547200 3252300 + 20570 11 19922 381931;381932;381933;381934;381935;381936;381937 233970;233971;233972;233973 233973 4 TTTFYMVVGIVPR Unmodified 1482.7905 0.7904715 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 2 2 1 2 2 51.055 49.666 2;3 4.2913E-05 19829 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 116.52 105.35 63481000 0 0 0 4620500 4364100 5039700 4629800 3649300 3003100 6147000 7209700 9681500 0 0 0 0 0 0 3426800 0 0 5425500 6284100 0 20571 559 19923 381938;381939;381940;381941;381942;381943;381944;381945;381946;381947;381948;381949;381950;381951;381952;381953;381954;381955;381956 233974;233975;233976;233977;233978;233979;233980 233977 7 TTTGDGIVAGLQVLAAMAR Unmodified 1843.9826 0.98258238 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 55.452 53.971 2;3 9.2691E-37 26600 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 234.92 225.14 1799600000 133590000 105950000 124300000 0 0 0 147790000 136310000 150570000 1437300 1941700 0 167600000 134330000 145540000 0 0 0 192780000 176130000 181370000 0 0 0 20572 1360 19924 381957;381958;381959;381960;381961;381962;381963;381964;381965;381966;381967;381968;381969;381970;381971;381972;381973;381974;381975;381976;381977;381978;381979;381980;381981;381982 233981;233982;233983;233984;233985;233986;233987;233988;233989;233990;233991;233992;233993;233994;233995;233996;233997;233998;233999;234000;234001;234002;234003 233989 23 TTTQELLAQAEK Unmodified 1331.6933 0.69325988 701 P0AC51 zur Zinc uptake regulation protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 27.831 26.845 2 3.377E-05 12161 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 112.36 101.19 52359000 10353000 17593000 13178000 0 0 0 0 0 0 0 0 0 0 0 4155700 0 0 0 3510600 0 3568300 0 0 0 20573 701 19925 381983;381984;381985;381986;381987;381988 234004;234005 234004 1 TTVGMALADSLNR Unmodified 1347.6816 0.68164933 234 P0A6E1 aroL Shikimate kinase 2 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 1 1 1 1 1 1 35.755 34.162 2 9.8561E-07 16316 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 106.29 94.577 92167000 15385000 2243200 0 0 0 0 6076200 9140700 8915900 0 0 0 10467000 8525900 0 0 0 0 8464500 13581000 9368400 0 0 0 20574 234 19926 381989;381990;381991;381992;381993;381994;381995;381996;381997;381998;381999 234006;234007 234007 2 TTVIALR Unmodified 772.48069 0.48068833 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 21.308 21.473 1;2 0.00023343 6497 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 163.34 83.509 7871900000 334320000 311600000 264700000 1514300 2062100 1553500 275430000 233310000 277770000 349680000 216750000 330780000 210200000 218840000 229310000 939080000 693950000 720920000 258500000 323270000 355400000 523540000 394930000 404460000 20575 384 19927 382000;382001;382002;382003;382004;382005;382006;382007;382008;382009;382010;382011;382012;382013;382014;382015;382016;382017;382018;382019;382020;382021;382022;382023;382024;382025;382026;382027;382028;382029;382030;382031;382032;382033 234008;234009;234010;234011;234012;234013;234014;234015;234016;234017;234018;234019;234020;234021;234022;234023;234024;234025;234026;234027;234028;234029;234030;234031;234032;234033 234008 24 TTVLQDLR Unmodified 944.5291 0.52909508 1951 Q2M7X4 yicS Uncharacterized protein YicS yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.059 24.031 2 0.062924 11026 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 57.047 39.662 75371000 12873000 13780000 11339000 0 0 0 8833300 9601500 7496900 0 0 0 4411500 0 2725500 0 0 0 4310400 0 0 0 0 0 20576 1951 19928 382034;382035;382036;382037;382038;382039;382040;382041;382042 234034 234034 1 TTVNGMPALR Unmodified 1058.5543 0.55426398 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.628 22.843 2 0.00020882 9411 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 120.46 113.56 324360000 24808000 30357000 25142000 0 0 0 25847000 23948000 29634000 0 899010 0 17612000 22847000 21573000 0 0 0 33875000 38007000 29812000 0 0 0 20577 170 19929 382043;382044;382045;382046;382047;382048;382049;382050;382051;382052;382053;382054;382055 234035;234036;234037;234038;234039;234040;234041;234042;234043;234044;234045;234046 234045 11 TTVPQIFIDAQHIGGCDDLYALDAR Unmodified 2788.349 0.34902881 704 P0AC62 grxC Glutaredoxin-3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 3 3 3 1 1 1 3 3 3 1 3 2 3 1 52.041 50.793 2;3;4 2.0254E-50 25139 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 297.87 293.35 8230400000 1062800000 895870000 931190000 4598900 0 3345400 737230000 704630000 766760000 3997500 3153200 5004300 575940000 498830000 566530000 0 4677100 0 760160000 63682000 639070000 2939700 0 0 20578 704 19930 382056;382057;382058;382059;382060;382061;382062;382063;382064;382065;382066;382067;382068;382069;382070;382071;382072;382073;382074;382075;382076;382077;382078;382079;382080;382081;382082;382083;382084;382085;382086;382087;382088;382089;382090;382091;382092;382093;382094 234047;234048;234049;234050;234051;234052;234053;234054;234055;234056;234057;234058;234059;234060;234061;234062;234063;234064;234065;234066;234067;234068;234069;234070;234071;234072 234048 26 TTVSHQQALLECLK Unmodified 1626.8399 0.83994089 1735 P69488 cutA Divalent-cation tolerance protein CutA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 2 1 2 1 1 24.136 23.2 2;3 2.3599E-26 10011 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 230.59 210.93 294360000 59056000 56873000 53860000 1064300 907290 1028800 22695000 28126000 25108000 0 0 1011200 12582000 6133500 15049000 0 0 0 2589600 0 8276600 0 0 0 20579 1735 19931 382095;382096;382097;382098;382099;382100;382101;382102;382103;382104;382105;382106;382107;382108;382109;382110;382111;382112;382113;382114;382115;382116;382117 234073;234074;234075;234076;234077;234078;234079;234080;234081 234077 8 TTVTHWVK Unmodified 970.52362 0.52361577 301 P0A720 tmk Thymidylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 12.827 13.782 2 0.0081284 4180 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 78.324 56.642 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20580 301 19932 382118;382119;382120;382121;382122;382123 234082;234083;234084;234085;234086;234087 234082 6 TTVTSGGLQR Unmodified 1018.5407 0.5407224 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.652 13.42 2 5.7736E-17 3747 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 233.21 213.42 402260000 16959000 17874000 18380000 0 0 0 6516000 6182300 3873400 0 0 0 87730000 74893000 85950000 1359000 0 0 29395000 26595000 26550000 0 0 0 20581 1513 19933 382124;382125;382126;382127;382128;382129;382130;382131;382132;382133;382134;382135;382136 234088;234089;234090;234091;234092;234093;234094;234095 234093 8 TVAAMDVLAPGIGEIIGGSQR Unmodified 2054.083 0.083024708 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1 2 2 2 1 2 54.385 52.928 2;3 1.5866E-52 26245 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 259 237.37 1403000000 226110000 112060000 227850000 0 0 0 78543000 73810000 70797000 0 0 0 52573000 97295000 87162000 0 0 0 151540000 77428000 147810000 0 0 0 20582 444 19934 382137;382138;382139;382140;382141;382142;382143;382144;382145;382146;382147;382148;382149;382150;382151;382152;382153;382154;382155;382156;382157 234096;234097;234098;234099;234100;234101;234102;234103;234104;234105;234106;234107;234108;234109;234110;234111;234112;234113;234114;234115;234116 234108 21 TVAAMSDFAAGANIDGK Unmodified 1637.7719 0.7719209 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 3 2 2 1 2 3 3 3 3 3 36.085 34.485 2;3 4.3501E-14 16489 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 171.29 162.56 757930000 46450000 55264000 54810000 0 0 0 61702000 50181000 50651000 0 1982000 0 72169000 67679000 65678000 0 0 0 88661000 74295000 68408000 0 0 0 20583 1120 19935 382158;382159;382160;382161;382162;382163;382164;382165;382166;382167;382168;382169;382170;382171;382172;382173;382174;382175;382176;382177;382178;382179;382180;382181;382182;382183;382184;382185;382186;382187;382188;382189 234117;234118;234119;234120;234121;234122;234123;234124;234125;234126;234127;234128;234129;234130;234131;234132;234133 234118 15 TVAEGVTEYMAWLNR Unmodified 1738.8349 0.83485551 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 2 2 1 2 2 2 52.227 50.924 2;3 5.3525E-27 23952 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 233.54 217.58 890080000 19777000 16073000 20599000 0 0 0 37412000 30615000 31730000 27949000 19971000 21412000 125630000 133870000 28770000 0 0 0 121090000 134810000 120380000 0 0 0 20584 1716 19936 382190;382191;382192;382193;382194;382195;382196;382197;382198;382199;382200;382201;382202;382203;382204;382205;382206;382207;382208;382209;382210;382211;382212 234134;234135;234136;234137;234138;234139;234140;234141;234142;234143;234144;234145;234146;234147;234148;234149;234150;234151;234152;234153;234154 234150 21 TVAFNTNGEMVAPNGSIGFR Unmodified 2081 2.33601E-05 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 42.12 40.003 2 1.3581E-23 15718 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 198.78 192.94 46921000 0 0 0 789870 567850 491840 0 0 0 2982500 3189300 3440700 0 0 0 0 0 0 0 0 0 11051000 11199000 13209000 20585 205 19937 382213;382214;382215;382216;382217;382218;382219;382220;382221 234155;234156;234157;234158;234159;234160 234158 6 TVAGFHLVGPWEQTVK Unmodified 1767.9308 0.93080481 1402 P33012 sbmC DNA gyrase inhibitor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 40.501 38.774 2;3 3.5842E-39 18780 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 255.93 251.76 1879700000 175140000 159610000 146470000 134230000 144560000 132500000 140530000 134500000 119360000 98188000 101590000 93959000 33389000 37145000 32325000 10958000 7820300 6738400 30033000 32431000 32874000 24722000 22511000 28142000 20586 1402 19938 382222;382223;382224;382225;382226;382227;382228;382229;382230;382231;382232;382233;382234;382235;382236;382237;382238;382239;382240;382241;382242;382243;382244;382245;382246;382247;382248;382249;382250;382251;382252;382253;382254;382255;382256;382257;382258;382259;382260;382261;382262;382263;382264;382265;382266 234161;234162;234163;234164;234165;234166;234167;234168;234169;234170;234171;234172;234173;234174;234175;234176;234177;234178;234179;234180;234181;234182;234183;234184;234185;234186;234187;234188;234189;234190;234191;234192;234193;234194;234195 234190 34 TVAGFHLVGPWEQTVKK Unmodified 1896.0258 0.025767826 1402 P33012 sbmC DNA gyrase inhibitor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 33.65 32.03 3 0.076969 11001 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 32.387 32.387 9387800 0 0 0 4052100 2495000 2840700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20587 1402 19939 382267;382268;382269 234196;234197;234198 234198 3 TVAGWIR Unmodified 801.44972 0.44972255 1731 P69425 tatB Sec-independent protein translocase protein TatB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 2 2 3 1 1 2 2 2 2 26.516 25.409 2 0.0038447 10650 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 106.29 51.521 269690000 5705100 11717000 3992600 1127700 568690 926020 29505000 29763000 41473000 0 0 0 22425000 19512000 21704000 0 0 0 29672000 27802000 23794000 0 0 0 20588 1731 19940 382270;382271;382272;382273;382274;382275;382276;382277;382278;382279;382280;382281;382282;382283;382284;382285;382286;382287;382288;382289;382290;382291;382292;382293 234199;234200;234201;234202;234203;234204;234205;234206 234200 6 TVAGYKPVAK Unmodified 1032.5968 0.59678072 237 P0A6E9 bioD2 ATP-dependent dethiobiotin synthetase BioD 2 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.335 12.19 2 0.0043246 3143 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 78.516 35.393 153130000 3981900 0 0 0 0 0 25993000 22007000 25944000 0 0 0 16588000 13205000 16086000 0 0 0 10903000 8980800 9438700 0 0 0 20589 237 19941 382294;382295;382296;382297;382298;382299;382300;382301;382302;382303 234207;234208;234209;234210;234211;234212 234209 6 TVALVGR Unmodified 714.43882 0.43882351 1631 P60752 msbA Lipid A export ATP-binding/permease protein MsbA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 16.138 16.6 2 0.0093129 4639 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 82.263 29.989 77642000 0 0 0 3349200 0 0 23991000 21067000 24435000 0 4154400 0 0 0 0 0 644260 0 0 0 0 0 0 0 20590 1631 19942 382304;382305;382306;382307;382308;382309;382310 234213;234214;234215 234214 2 TVAPAGGEAFEAR Unmodified 1274.6255 0.62551466 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.424 20.833 2 3.7168E-05 7744 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 100.82 88.772 1560600000 133650000 120070000 115390000 342000 613550 0 115790000 118750000 118240000 0 0 0 144820000 127850000 109130000 0 0 0 154790000 156380000 144820000 0 0 0 20591 1188 19943 382311;382312;382313;382314;382315;382316;382317;382318;382319;382320;382321;382322;382323;382324 234216;234217;234218;234219;234220;234221;234222;234223;234224;234225;234226 234226 9 TVASCALLQAAK Unmodified 1231.6595 0.65945733 1081 P13000 bioD1 ATP-dependent dethiobiotin synthetase BioD 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.804 25.657 2 0.064825 11593 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 43.651 30.614 58267000 4063900 5459400 6547100 0 0 0 4618700 5147200 5618300 0 0 0 4523100 3649200 2436000 0 0 0 5412800 6381300 4409900 0 0 0 20592 1081 19944 382325;382326;382327;382328;382329;382330;382331;382332;382333;382334;382335;382336 234227;234228 234227 0 TVATAQFFITGAFPGCDIPVHHQEK Unmodified 2770.3537 0.35372026 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 1 1 2 1 2 1 42.476 40.779 3;4 4.6928E-07 19971 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.7 97.904 759990000 189690000 212820000 190180000 0 0 0 25223000 25350000 32523000 0 0 0 8284600 11515000 11794000 0 0 0 18908000 17725000 15973000 0 0 0 20593 1160 19945 382337;382338;382339;382340;382341;382342;382343;382344;382345;382346;382347;382348;382349;382350;382351;382352;382353;382354;382355 234229;234230;234231;234232;234233;234234;234235;234236;234237 234232 8 TVATDGHR Unmodified 855.41988 0.41987898 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 3 1 1 1 1 1 1 1 1 1 1 1 6.9712 7.5925 2 0.00043426 1770 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 139.31 114.31 7453600000 42523000 37259000 36468000 781960 899110 938340 37560000 31996000 33146000 2519700000 2291800000 2194700000 28419000 27616000 25700000 0 0 1023900 38612000 41997000 31083000 0 15824000 15544000 20594 497 19946 382356;382357;382358;382359;382360;382361;382362;382363;382364;382365;382366;382367;382368;382369;382370;382371;382372;382373;382374;382375;382376;382377;382378;382379;382380;382381;382382 234238;234239;234240;234241;234242;234243;234244;234245;234246;234247;234248;234249 234240 11 TVATHALSIFGDHSDVMAVR Unmodified 2126.0579 0.05787259 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.24 34.683 4 0.0005103 16562 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 64.83 61.948 365990000 43048000 44007000 30683000 0 0 0 31049000 35184000 27890000 0 0 0 26908000 19259000 22381000 0 0 0 28103000 27705000 29776000 0 0 0 20595 1609 19947 382383;382384;382385;382386;382387;382388;382389;382390;382391;382392;382393;382394 234250 234250 1 TVAVEHAEPVYLR Unmodified 1482.7831 0.78307794 1844 P76256 tsaB tRNA threonylcarbamoyladenosine biosynthesis protein TsaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 1 1 2 2 2 22.347 21.925 2;3 6.3591E-14 9239 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 233.14 223.18 658200000 50900000 12742000 12399000 0 0 0 60638000 62310000 49724000 0 0 0 67012000 62119000 16111000 0 790930 0 80657000 92905000 89895000 0 0 0 20596 1844 19948 382395;382396;382397;382398;382399;382400;382401;382402;382403;382404;382405;382406;382407;382408;382409;382410;382411;382412;382413;382414;382415;382416 234251;234252;234253;234254;234255;234256;234257;234258;234259;234260;234261;234262;234263;234264;234265;234266;234267;234268 234258 18 TVAVEHAEPVYLRNNVAWK Unmodified 2195.1487 0.14873651 1844 P76256 tsaB tRNA threonylcarbamoyladenosine biosynthesis protein TsaB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.557 48.188 3 0.16414 23506 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 15.254 7.0667 256310000 48935000 46001000 50278000 610970 0 0 17237000 0 14516000 0 0 0 15496000 12258000 11213000 0 0 0 12751000 12556000 14461000 0 0 0 20597 1844 19949 382417;382418;382419;382420;382421;382422;382423;382424;382425;382426;382427;382428 234269;234270 234269 2 TVAVHSSADR Unmodified 1041.5203 0.52032131 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 2 1 1 8.7027 9.5659 2 5.3499E-05 1216 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.77 118.22 660260000 85946000 25669000 14624000 0 0 0 70860000 68871000 51163000 0 0 0 29967000 26071000 21120000 0 0 0 65935000 82246000 117780000 0 0 0 20598 1236 19950 382429;382430;382431;382432;382433;382434;382435;382436;382437;382438;382439;382440;382441;382442;382443 234271;234272;234273;234274;234275;234276;234277;234278;234279;234280;234281;234282;234283;234284;234285;234286;234287 234271 17 TVAVTPDYAEIAK Unmodified 1376.7187 0.71874635 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.739 29.332 2 4.4576E-07 10912 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 147.74 127.41 1185600000 33463000 0 36786000 5713400 6439400 6810600 79355000 75960000 76209000 31202000 28407000 29274000 66048000 57736000 51663000 6881300 3169500 2894100 91628000 101930000 93368000 101340000 102520000 96812000 20599 205 19951 382444;382445;382446;382447;382448;382449;382450;382451;382452;382453;382454;382455;382456;382457;382458;382459;382460;382461;382462;382463;382464;382465;382466 234288;234289;234290;234291;234292;234293;234294;234295;234296;234297;234298;234299;234300;234301 234291 14 TVDALGNVHYDDNQVILK Unmodified 2013.0167 0.016719282 1372 P31554 lptD LPS-assembly protein LptD yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 34.779 32.779 3 0.02885 15938 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 40.085 23.205 47374000 5400800 0 0 0 0 0 8412200 10842000 7317000 4780500 2956300 2898700 0 0 0 0 0 0 0 0 0 2353600 2412800 0 20600 1372 19952 382467;382468;382469;382470;382471;382472;382473;382474;382475 234302 234302 1 TVDALMR Unmodified 804.41637 0.41637351 365 P0A7R5 rpsJ 30S ribosomal protein S10 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 2 3 2 2 2 2 2 19.105 19.448 1;2 0.00028403 7460 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.89 57.057 4084300000 497150000 491440000 421290000 34084000 32727000 33127000 200090000 170950000 165130000 89398000 75009000 80295000 213620000 210830000 190020000 24879000 17090000 18540000 358730000 343620000 280960000 45315000 43256000 46737000 20601 365 19953 382476;382477;382478;382479;382480;382481;382482;382483;382484;382485;382486;382487;382488;382489;382490;382491;382492;382493;382494;382495;382496;382497;382498;382499;382500;382501;382502;382503;382504;382505;382506;382507;382508;382509;382510;382511;382512;382513;382514;382515;382516;382517;382518;382519;382520;382521;382522;382523;382524;382525;382526 234303;234304;234305;234306;234307;234308;234309;234310;234311;234312;234313;234314;234315;234316;234317;234318;234319;234320;234321;234322;234323;234324;234325;234326;234327;234328;234329;234330;234331;234332;234333;234334 234318 24 TVDDFINEVIEPNK Unmodified 1631.8043 0.80426689 1506 P38521 yggL Uncharacterized protein YggL yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 49.939 48.654 2 2.6723E-08 23832 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 150.46 149.37 320810000 89111000 85718000 82405000 0 0 0 0 0 0 0 0 0 22302000 20086000 21188000 0 0 0 0 0 0 0 0 0 20602 1506 19954 382527;382528;382529;382530;382531;382532 234335;234336 234335 2 TVDELNR Unmodified 845.4243 0.42429566 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 12.494 13.092 2 0.012974 3125 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 84.244 51.773 52661000 0 0 0 14146000 10291000 11579000 0 0 0 4386200 3647700 3627000 0 0 0 0 0 0 0 0 0 4985000 0 0 20603 1899 19955 382533;382534;382535;382536;382537;382538;382539 234337;234338 234338 2 TVDGPSHK Unmodified 839.41373 0.41373097 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 2 1 1 1 2 1 1 1 1 1 3 3 3 1 1 1 4 3 5 1 1 1 6.5646 7.2828 2 0.0038108 934 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 89.296 76.865 18127000000 1300700000 1528200000 1198000000 2828800 3869600 3396800 1495200000 1424700000 1408000000 3333000 3068500 2427600 1729300000 1404300000 1404100000 1265300 1136000 1072600 1710900000 1754600000 1742500000 1365100 1035600 1311300 20604 504 19956 382540;382541;382542;382543;382544;382545;382546;382547;382548;382549;382550;382551;382552;382553;382554;382555;382556;382557;382558;382559;382560;382561;382562;382563;382564;382565;382566;382567;382568;382569;382570;382571;382572;382573;382574;382575;382576;382577;382578;382579;382580;382581;382582;382583;382584 234339;234340;234341;234342;234343;234344;234345;234346;234347;234348;234349;234350;234351;234352;234353;234354;234355;234356;234357;234358;234359;234360;234361;234362;234363;234364 234351 23 TVDVHIR Unmodified 838.4661 0.4661009 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.072 13.846 2 0.0023399 3949 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 114.02 77.194 759510000 0 0 4111900 0 0 0 70182000 78810000 75823000 0 0 0 77104000 80305000 58175000 0 0 0 102600000 95234000 113510000 1544200 0 2105800 20605 946 19957 382585;382586;382587;382588;382589;382590;382591;382592;382593;382594;382595;382596 234365;234366;234367 234366 3 TVDVTIR Unmodified 802.45487 0.45486751 546 P0A9Q1 arcA Aerobic respiration control protein ArcA yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 17.784 18.369 2 0.0010138 6684 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 138.85 69.465 1129800000 144680000 151030000 124380000 3952200 0 0 129530000 131060000 133290000 5016800 0 0 0 59775000 59145000 0 0 0 71527000 63258000 53187000 0 0 0 20606 546 19958 382597;382598;382599;382600;382601;382602;382603;382604;382605;382606;382607;382608;382609 234368;234369;234370;234371 234371 4 TVEAASALEQGDLK Unmodified 1430.7253 0.72528829 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.274 25.187 2 1.3918E-11 11674 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 177.44 167.34 189140000 20343000 23668000 22949000 0 0 0 21900000 24088000 18185000 0 0 0 7403400 7505600 7592600 0 0 0 10225000 12295000 12988000 0 0 0 20607 278 19959 382610;382611;382612;382613;382614;382615;382616;382617;382618;382619;382620;382621 234372;234373;234374 234372 3 TVEAASALEQGDLKR Unmodified 1586.8264 0.82639932 278 P0A6T3 galK Galactokinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 20.372 20.759 2;3 2.2648E-35 8028 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 254.34 216.25 104030000 8709400 13891000 10745000 0 0 0 8864200 7128200 7868300 0 0 0 13231000 2216400 0 0 0 0 5125400 4920600 21334000 0 0 0 20608 278 19960 382622;382623;382624;382625;382626;382627;382628;382629;382630;382631;382632;382633;382634 234375;234376;234377;234378;234379;234380;234381;234382;234383;234384 234382 10 TVEASEDKFTGFVFK Unmodified 1703.8407 0.8406524 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 2 2 2 2 2 36.184 34.613 2;3 1.0509E-14 16675 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.58 169.47 600380000 41814000 44666000 37264000 0 0 0 42375000 40740000 48043000 0 0 0 43529000 42932000 39262000 0 0 0 64925000 75684000 79150000 0 0 0 20609 346 19961 382635;382636;382637;382638;382639;382640;382641;382642;382643;382644;382645;382646;382647;382648;382649;382650;382651;382652;382653;382654;382655;382656;382657;382658;382659 234385;234386;234387;234388;234389;234390;234391;234392;234393;234394;234395;234396;234397;234398;234399;234400;234401 234389 17 TVEDAVK Unmodified 760.39668 0.39668393 291 P0A6Y1 ihfB Integration host factor subunit beta yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.342 12.249 2 0.013597 3198 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83.614 37.263 781460000 88616000 181650000 143860000 4562600 5417800 3198000 0 0 79564000 0 0 0 44940000 45618000 61891000 0 0 0 38151000 40137000 43850000 0 0 0 20610 291 19962 382660;382661;382662;382663;382664;382665;382666;382667;382668;382669;382670;382671;382672 234402;234403 234402 2 TVEDAVKEMLEHMASTLAQGER Unmodified 2444.1676 0.16755897 291 P0A6Y1 ihfB Integration host factor subunit beta yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 2 1 1 1 2 2 2 2 2 2 1 1 55.413 54.324 3;4 6.0249E-35 20820 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 210.46 208.62 643660000 4784700 3239500 3784400 5642100 0 8820100 1805100 0 1315100 13100000 31296000 24111000 0 0 0 148050000 198570000 190300000 2871300 2679600 0 0 0 3295800 20611 291 19963 382673;382674;382675;382676;382677;382678;382679;382680;382681;382682;382683;382684;382685;382686;382687;382688;382689;382690;382691;382692;382693;382694;382695;382696 234404;234405;234406;234407;234408;234409;234410;234411;234412 234408 9 TVEGYPAPK Unmodified 960.49165 0.49164694 1848 P76291 cmoB tRNA (mo5U34)-methyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.133 14.973 2 0.0072664 4545 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 67.981 57.108 81717000 8935800 7583000 0 0 0 0 5890000 14593000 12364000 0 0 0 3827100 4159700 3697700 0 0 0 7449200 6661600 6555600 0 0 0 20612 1848 19964 382697;382698;382699;382700;382701;382702;382703;382704;382705;382706;382707 234413;234414 234414 1 TVEIQIR Unmodified 857.49707 0.49706667 980 P0AG20 relA GTP pyrophosphokinase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 26.497 25.568 2 0.011921 10863 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 85.306 14.165 246010000 24446000 20842000 22736000 0 0 956100 19638000 19942000 12180000 5053600 4138400 5371100 13241000 16870000 16950000 0 0 0 22019000 18259000 21214000 1102200 1052600 0 20613 980 19965 382708;382709;382710;382711;382712;382713;382714;382715;382716;382717;382718;382719;382720;382721;382722;382723;382724;382725;382726;382727;382728;382729;382730;382731;382732;382733;382734;382735;382736;382737;382738 234415;234416;234417;234418;234419;234420 234415 5 TVEQLLK Unmodified 829.49092 0.49091866 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.7 21.625 2 0.011149 6963 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 86.086 53.616 422010000 0 0 0 4512700 5642600 5660700 0 0 55481000 18091000 17359000 9635800 47506000 32628000 35690000 2510000 2196800 1896600 54227000 50216000 49894000 6895400 10862000 11102000 20614 146 19966 382739;382740;382741;382742;382743;382744;382745;382746;382747;382748;382749;382750;382751;382752;382753;382754;382755;382756;382757 234421;234422;234423;234424;234425;234426;234427;234428;234429;234430;234431 234424 9 TVETQLNPTQPVNQQIYR Unmodified 2128.0913 0.091281208 736 P0ACM2 rspR HTH-type transcriptional repressor RspR yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching 2 1 1 2 1 32.697 31.493 3;4 9.8572E-07 14311 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.235 95.585 74869000 29327000 7847000 6602500 0 0 0 0 0 0 0 0 0 27409000 3683300 0 0 0 0 0 0 0 0 0 0 20615 736 19967 382758;382759;382760;382761;382762;382763;382764 234432;234433;234434 234432 3 TVEVGPLANMLVK Unmodified 1369.7639 0.7639224 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.321 44.597 2 7.5521E-06 17587 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 123.86 123.01 130670000 0 0 0 0 0 0 4648100 6089100 4200400 14454000 14253000 13991000 5202300 4617700 5193000 0 0 0 7552300 7981700 7468800 12239000 12267000 10508000 20616 723 19968 382765;382766;382767;382768;382769;382770;382771;382772;382773;382774;382775;382776;382777;382778;382779 234435;234436;234437;234438;234439;234440;234441;234442;234443;234444;234445;234446;234447 234441 10 TVEVTLR Unmodified 816.47052 0.47051757 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 2 2 2 2 2 2 2 1 2 1 19.225 19.723 2 0.0011261 7134 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 135.87 81.34 1032400000 6910800 64631000 63456000 0 1706300 1893500 106460000 103870000 109280000 0 0 0 96689000 87264000 73481000 0 0 0 114030000 90902000 107770000 0 0 4100600 20617 803 19969 382780;382781;382782;382783;382784;382785;382786;382787;382788;382789;382790;382791;382792;382793;382794;382795;382796;382797;382798;382799;382800;382801;382802;382803 234448;234449;234450;234451;234452;234453;234454;234455;234456;234457;234458 234453 9 TVEVVAMAEEEGSRFPYVFWGSK Unmodified 2617.2523 0.25227488 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 53.715 52.739 3 5.1146E-15 19306 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 137.42 135.17 45527000 0 0 0 14988000 14465000 12804000 0 0 0 0 0 0 0 0 0 0 3269300 0 0 0 0 0 0 0 20618 1904 19970 382804;382805;382806;382807 234459;234460 234460 2 TVEWYLSNTK Unmodified 1239.6136 0.61355299 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 32.026 30.649 2 0.0002603 14423 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 115.71 111.86 672990000 0 22848000 0 0 0 0 69377000 66631000 67932000 0 0 0 54009000 57234000 50008000 0 0 0 88323000 99375000 97248000 0 0 0 20619 1496 19971 382808;382809;382810;382811;382812;382813;382814;382815;382816;382817 234461;234462;234463 234461 2 TVFGNVALPLELDNTPKDEVK Unmodified 2298.2107 0.21072764 1346 P30750 metN Methionine import ATP-binding protein MetN yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.663 45.042 3 0.00011412 18128 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 72.443 64.821 103230000 5003100 4892800 6954300 0 2594500 0 7167000 11130000 7685700 7465900 8461900 6901500 6002900 4365200 0 0 0 0 6067900 9022800 5960600 0 0 3552500 20620 1346 19972 382818;382819;382820;382821;382822;382823;382824;382825;382826;382827;382828;382829;382830;382831;382832;382833 234464;234465 234465 2 TVFLIGGAK Unmodified 904.5382 0.53820321 685 P0ABV6 tolR Protein TolR yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 31.328 29.909 2 0.12486 13503 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 44.117 19.613 17680000 0 0 0 0 0 0 0 4921000 0 0 0 0 6141300 0 0 0 0 0 0 0 6617500 0 0 0 20621 685 19973 382834;382835;382836 234466 234466 0 TVGAGVVAK Unmodified 800.4756 0.47560295 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 2 3 3 3 2 2 2 2 2 2 3 3 3 2 2 2 2 2 3 2 2 2 12.944 13.598 1;2 0.0010857 3187 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 93.561 64.251 102400000000 6256600000 5666500000 6010100000 185110000 156280000 182930000 10484000000 9271800000 9669700000 113080000 93430000 117970000 8746500000 8687700000 8540500000 48381000 42706000 42726000 9876800000 9245200000 8760000000 69193000 64999000 72612000 20622 1048 19974 382837;382838;382839;382840;382841;382842;382843;382844;382845;382846;382847;382848;382849;382850;382851;382852;382853;382854;382855;382856;382857;382858;382859;382860;382861;382862;382863;382864;382865;382866;382867;382868;382869;382870;382871;382872;382873;382874;382875;382876;382877;382878;382879;382880;382881;382882;382883;382884;382885;382886;382887;382888;382889;382890;382891;382892;382893 234467;234468;234469;234470;234471;234472;234473;234474;234475;234476;234477;234478;234479;234480;234481;234482;234483;234484;234485;234486;234487;234488;234489;234490;234491;234492;234493;234494;234495 234469 28 TVGDPLTGHPK Unmodified 1120.5877 0.58767259 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 1 13.286 14.067 2;3 0.00044855 4251 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 67.93 63.587 153740000 3067300 0 0 0 0 0 43966000 44580000 42300000 0 0 0 0 0 0 0 0 0 7750600 12077000 0 0 0 0 20623 1925 19975 382894;382895;382896;382897;382898;382899;382900;382901;382902 234496;234497;234498 234498 1 TVGELHLR Unmodified 923.51886 0.51886475 665 P0ABK2 cydB Cytochrome bd-I ubiquinol oxidase subunit 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 1 1 15.859 16.35 2 0.0029529 4550 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 96.19 81.415 881940000 24243000 22036000 24029000 2818700 2999900 3391600 132840000 110940000 134630000 37996000 29276000 29032000 65974000 53165000 50823000 6370800 4837400 3495700 44716000 37429000 41828000 5268100 6695600 7102900 20624 665 19976 382903;382904;382905;382906;382907;382908;382909;382910;382911;382912;382913;382914;382915;382916;382917;382918;382919;382920;382921;382922;382923;382924;382925;382926;382927;382928;382929 234499;234500;234501;234502;234503;234504;234505;234506;234507;234508;234509 234499 8 TVGFKPAGGVR Unmodified 1087.6138 0.61382777 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 3 2 2 2 3 1 1 2 2 2 13.546 14.378 2;3 0.00011939 4572 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.65 139.67 4248000000 179310000 148680000 126700000 559770 804170 920770 699140000 598190000 511290000 0 0 0 347510000 342380000 297220000 0 526300 346960 280970000 393520000 319950000 0 0 0 20625 257 19977 382930;382931;382932;382933;382934;382935;382936;382937;382938;382939;382940;382941;382942;382943;382944;382945;382946;382947;382948;382949;382950;382951;382952;382953;382954;382955;382956;382957;382958;382959;382960 234510;234511;234512;234513;234514;234515;234516;234517;234518;234519;234520;234521;234522;234523;234524;234525;234526;234527;234528;234529;234530;234531;234532;234533 234522 21 TVGIVGVGNVGR Unmodified 1126.6459 0.64585618 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.784 25.692 2 2.2281E-06 11720 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 143.28 127.08 1991600000 75513000 93822000 65905000 0 0 298440 78353000 72915000 76735000 67059000 58220000 58145000 75018000 60166000 50700000 221610000 181410000 196570000 80732000 72834000 75612000 115780000 101160000 113080000 20626 111 19978 382961;382962;382963;382964;382965;382966;382967;382968;382969;382970;382971;382972;382973;382974;382975;382976;382977;382978;382979;382980;382981;382982 234534;234535;234536;234537;234538;234539;234540;234541;234542;234543;234544;234545 234544 12 TVGQLLK Unmodified 757.46979 0.46978929 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 2 2 2 2 1 1 1 2 1 2 1 1 1 2 2 1 1 1 1 19.966 20.126 1;2 0.0078225 7271 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 89.703 50.885 17362000000 1000500000 1005100000 927020000 13283000 13910000 14085000 1658300000 1557600000 1780400000 23710000 16757000 15986000 1175100000 1195400000 1272400000 13508000 10316000 11994000 2174700000 2042100000 1402700000 12857000 13256000 11529000 20627 267 19979 382983;382984;382985;382986;382987;382988;382989;382990;382991;382992;382993;382994;382995;382996;382997;382998;382999;383000;383001;383002;383003;383004;383005;383006;383007;383008;383009;383010;383011;383012;383013;383014;383015;383016;383017 234546;234547;234548;234549;234550;234551;234552;234553;234554;234555;234556;234557;234558;234559;234560;234561;234562;234563;234564;234565;234566;234567;234568;234569;234570;234571;234572;234573;234574;234575;234576;234577;234578;234579;234580;234581;234582;234583;234584;234585;234586;234587;234588 234576 41 TVGVVAALLSDTQR Unmodified 1428.7936 0.79364262 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 46.883 45.48 2 0.05457 22402 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 44.847 34.539 9574600 0 0 0 0 0 0 0 0 3738300 0 0 0 2897300 2939000 0 0 0 0 0 0 0 0 0 0 20628 1083 19980 383018;383019;383020 234589 234589 0 TVGWIAHWSEMHSDGMK Unmodified 1970.8767 0.8767371 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 4 4 1 1 1 2 1 2 2 3 2 2 32.948 31.563 2;3;4 4.7967E-24 14810 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 203.74 199.1 3586500000 797870000 759150000 695940000 0 736740 0 25908000 20821000 22827000 0 0 0 25495000 199270000 189940000 0 0 0 319610000 288070000 240900000 0 0 0 20629 657 19981 383021;383022;383023;383024;383025;383026;383027;383028;383029;383030;383031;383032;383033;383034;383035;383036;383037;383038;383039;383040;383041;383042;383043;383044;383045;383046;383047 234590;234591;234592;234593;234594;234595;234596;234597;234598;234599;234600;234601;234602;234603;234604;234605;234606;234607;234608;234609 234600 20 TVHCCELQDILQNQYSALITNIGK Unmodified 2817.3789 0.37894873 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 1 1 1 2 2 2 1 1 53.29 52.016 2;3 2.41E-40 25429 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 263.2 262.09 1763700000 0 0 0 0 0 0 169760000 156740000 156800000 42194000 30539000 32698000 170940000 195350000 6609100 13027000 14185000 27319000 228830000 245770000 223140000 24561000 0 25196000 20630 723 19982 383048;383049;383050;383051;383052;383053;383054;383055;383056;383057;383058;383059;383060;383061;383062;383063;383064;383065;383066;383067;383068;383069;383070;383071;383072 234610;234611;234612;234613;234614;234615;234616;234617;234618;234619;234620;234621 234617 12 TVHLIGGCDVAMELDARR Unmodified 2011.9932 0.99316384 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 1 2 2 2 1 1 1 2 1 2 30.17 28.735 4;5 0.15614 13724 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 9.2633 5.9759 270460000 0 9909900 6510500 0 0 0 60500000 53935000 57488000 0 0 0 8793500 1685100 5663700 0 0 0 29218000 11502000 25252000 0 0 0 20631 1554 19983 383073;383074;383075;383076;383077;383078;383079;383080;383081;383082;383083;383084;383085;383086;383087;383088;383089 234622;234623;234624 234622 3 TVHSLTQALAK Unmodified 1167.6612 0.66117189 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 1 2 2 2 2 2 2 1 16.053 16.867 2;3 4.0607E-14 5879 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 205.83 168.28 7432800000 1900100000 2568000000 2453600000 0 0 4690000 15600000 9175900 6828100 0 0 0 38602000 33146000 28513000 0 0 0 126730000 128310000 119080000 0 0 558300 20632 318 19984 383090;383091;383092;383093;383094;383095;383096;383097;383098;383099;383100;383101;383102;383103;383104;383105;383106;383107;383108;383109;383110;383111;383112;383113 234625;234626;234627;234628;234629;234630;234631;234632;234633;234634;234635;234636;234637;234638;234639;234640;234641;234642;234643;234644 234637 20 TVIGFGSPNK Unmodified 1018.5447 0.54474515 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 1 1 1 1 1 1 23.176 22.479 2 0.00030192 9380 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.95 82.588 1346300000 250880000 234750000 218010000 0 0 0 138820000 139790000 150710000 2420600 0 0 30699000 30127000 29631000 0 0 0 44692000 39779000 36026000 0 0 0 20633 1423 19985 383114;383115;383116;383117;383118;383119;383120;383121;383122;383123;383124;383125;383126;383127;383128 234645;234646;234647;234648;234649;234650;234651;234652;234653;234654;234655;234656 234654 9 TVILNEGDFVVFYPGEVHK Unmodified 2162.1048 0.10480601 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 1 49.069 47.744 2;3 1.2189E-13 23295 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 174.59 166.28 540220000 174220000 152100000 162010000 3978000 3560100 3644000 6282600 5401500 6986600 0 0 0 5009100 3949500 4848200 0 0 0 0 5234500 2992800 0 0 0 20634 921 19986 383129;383130;383131;383132;383133;383134;383135;383136;383137;383138;383139;383140;383141;383142;383143;383144;383145 234657;234658;234659;234660;234661 234660 5 TVILNEGDFVVFYPGEVHKPLCAVGAPAQVR Unmodified 3381.7544 0.75436735 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 2 3 3 2 2 2 2 2 1 2 2 1 47.158 45.765 3;4;5 3.6311E-33 22368 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 197.14 174.38 6253800000 2034000000 1841300000 1658300000 67921000 56939000 43001000 102090000 106190000 84668000 0 0 0 43165000 33709000 37120000 0 0 0 58297000 45606000 41402000 0 0 0 20635 921 19987 383146;383147;383148;383149;383150;383151;383152;383153;383154;383155;383156;383157;383158;383159;383160;383161;383162;383163;383164;383165;383166;383167;383168;383169;383170;383171;383172;383173;383174;383175;383176;383177;383178 234662;234663;234664;234665;234666;234667;234668;234669;234670;234671;234672;234673;234674;234675;234676;234677;234678;234679;234680;234681;234682;234683;234684;234685;234686;234687 234674 26 TVINFDNAIIAAGSR Unmodified 1560.826 0.82600539 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 44.184 42.527 2;3 5.7951E-15 19840 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 224.24 213.33 7880400000 619840000 592230000 538590000 54735000 91856000 68926000 624370000 643700000 550340000 21363000 11747000 10895000 557610000 539440000 544660000 4417500 0 0 638160000 665580000 814610000 107170000 84906000 95305000 20636 542 19988 383179;383180;383181;383182;383183;383184;383185;383186;383187;383188;383189;383190;383191;383192;383193;383194;383195;383196;383197;383198;383199;383200;383201;383202;383203;383204;383205;383206;383207;383208;383209;383210;383211;383212;383213;383214;383215;383216;383217;383218;383219 234688;234689;234690;234691;234692;234693;234694;234695;234696;234697;234698;234699;234700;234701;234702;234703;234704;234705;234706;234707;234708;234709;234710;234711;234712;234713;234714;234715;234716;234717;234718;234719;234720;234721;234722;234723;234724;234725;234726;234727;234728;234729;234730;234731;234732;234733;234734;234735;234736;234737;234738;234739;234740;234741;234742;234743;234744;234745;234746;234747;234748;234749 234744 60 TVINFDNAIIAAGSRPIQLPFIPHEDPR Unmodified 3100.6458 0.64580318 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 5 4 4 2 2 3 3 3 4 3 3 3 3 2 2 3 3 3 5 5 4 52.646 51.441 2;3;4;5 1.9297E-24 20479 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 180.06 174.68 27857000000 507930000 492800000 390290000 4047800000 3403900000 3592500000 72915000 51886000 423950000 590920000 507450000 594030000 312020000 297180000 295620000 124130000 134390000 108750000 476100000 490630000 544320000 3336800000 3588400000 3472700000 20637 542 19989 383220;383221;383222;383223;383224;383225;383226;383227;383228;383229;383230;383231;383232;383233;383234;383235;383236;383237;383238;383239;383240;383241;383242;383243;383244;383245;383246;383247;383248;383249;383250;383251;383252;383253;383254;383255;383256;383257;383258;383259;383260;383261;383262;383263;383264;383265;383266;383267;383268;383269;383270;383271;383272;383273;383274;383275;383276;383277;383278;383279;383280;383281;383282;383283;383284;383285;383286;383287;383288;383289;383290;383291;383292;383293;383294;383295;383296;383297 234750;234751;234752;234753;234754;234755;234756;234757;234758;234759;234760;234761;234762;234763;234764;234765;234766;234767;234768;234769;234770;234771;234772;234773;234774;234775;234776;234777;234778;234779;234780;234781;234782;234783;234784;234785;234786;234787;234788;234789;234790;234791;234792;234793;234794;234795;234796;234797;234798;234799;234800;234801;234802;234803;234804;234805;234806;234807;234808;234809 234781 60 TVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELK Unmodified 4372.2856 0.28557093 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 2 1 53.727 52.856 4;5 1.4549E-07 19414 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 74.397 72.353 437210000 0 0 0 81491000 93681000 87161000 0 0 0 0 0 0 0 0 0 39715000 0 113680000 0 0 0 21486000 0 0 20638 542 19990 383298;383299;383300;383301;383302;383303;383304;383305;383306 234810;234811;234812;234813;234814 234812 5 TVINIPGCPPNPHNFLATVAHIITYGKPPK Unmodified 3265.7434 0.74340874 1739 P69741 hybO Hydrogenase-2 small chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 1 1 1 52.245 50.918 4;5 1.5356E-06 20417 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 85 79.34 339010000 0 0 0 0 0 0 21356000 35162000 34036000 38597000 8545300 31547000 15470000 15998000 17202000 0 0 0 28041000 25373000 15348000 16109000 17477000 18752000 20639 1739 19991 383307;383308;383309;383310;383311;383312;383313;383314;383315;383316;383317;383318;383319;383320;383321;383322;383323;383324;383325;383326;383327;383328;383329;383330;383331;383332 234815;234816;234817;234818;234819;234820;234821;234822;234823 234818 9 TVINQVTYLPIASEVTDVNR Unmodified 2231.1798 0.17976186 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 50.331 49.034 2;3 2.4004E-81 24150 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 319.39 296.53 13074000000 3053800000 3165900000 3173300000 5756800 21452000 24665000 401450000 454020000 404020000 3860800 2946200 2525100 342660000 291120000 332730000 2958300 1530100 2372700 468930000 456440000 457650000 1469900 782830 1285800 20640 1217 19992 383333;383334;383335;383336;383337;383338;383339;383340;383341;383342;383343;383344;383345;383346;383347;383348;383349;383350;383351;383352;383353;383354;383355;383356;383357;383358;383359;383360;383361;383362;383363;383364;383365;383366;383367;383368;383369;383370 234824;234825;234826;234827;234828;234829;234830;234831;234832;234833;234834;234835;234836;234837;234838;234839;234840;234841;234842;234843;234844;234845;234846;234847;234848;234849;234850;234851;234852;234853;234854;234855;234856;234857;234858 234829 35 TVIPQWEEQAR Unmodified 1355.6834 0.68336389 667 P0ABK9 nrfA Cytochrome c-552 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 29.666 28.338 2 0.00019298 13461 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 105.4 92.043 94184000 0 0 0 0 0 0 9315800 8742400 7030400 0 0 0 12701000 13531000 12606000 0 0 0 9590200 11988000 8678300 0 0 0 20641 667 19993 383371;383372;383373;383374;383375;383376;383377;383378;383379 234859;234860;234861;234862;234863;234864;234865 234859 4 TVIYQTTITR Unmodified 1194.6608 0.66083754 115 P05706 srlB Glucitol/sorbitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.772 22.935 2 1.1292E-06 9542 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 168.27 162.16 331060000 7220100 4591600 4088300 0 0 0 52307000 56927000 44115000 5965000 3921900 4567900 29875000 36394000 28584000 1089600 0 0 26816000 24602000 0 0 0 0 20642 115 19994 383380;383381;383382;383383;383384;383385;383386;383387;383388;383389;383390;383391;383392;383393;383394 234866;234867;234868;234869;234870;234871;234872;234873;234874;234875 234873 9 TVLEALPAASHPMDVMR Unmodified 1836.9226 0.92262466 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 37.155 35.623 2;3 1.5317E-24 17268 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 240.59 237.06 619740000 213030000 222670000 180630000 955960 1171600 1278700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20643 1374 19995 383395;383396;383397;383398;383399;383400;383401;383402;383403 234876;234877;234878;234879;234880 234876 5 TVLFAALTGSLENHPDGFNFK Unmodified 2277.143 0.14298243 770 P0AD59 ivy Inhibitor of vertebrate lysozyme yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 51.692 50.792 3 1.1423E-34 24822 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.11 175.77 261860000 49299000 44022000 47557000 0 0 0 35145000 0 40178000 0 0 0 0 0 11906000 5372000 3255100 4110800 9848500 11165000 0 0 0 0 20644 770 19996 383404;383405;383406;383407;383408;383409;383410;383411;383412;383413;383414 234881;234882;234883;234884 234884 4 TVLGSMELDEMLSQR Unmodified 1707.8172 0.81715654 576 P0AA53 qmcA Protein QmcA yes yes 0 0 0 By MS/MS 1 50.253 48.452 2 1.8073E-08 19567 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 140.31 136.55 4247800 0 0 0 0 0 0 0 0 0 4247800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20645 576 19997 383415 234885 234885 1 TVLHLIPSGILR Unmodified 1317.8133 0.81325585 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 40.093 38.331 2;3 4.0045E-06 18624 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 163.38 163.38 11571000000 1198800000 1111800000 1022900000 5878200 6777200 6216200 946370000 780440000 962230000 3986800 0 3356800 764100000 753500000 759950000 0 0 0 1127000000 1091800000 1021500000 2317400 2559400 0 20646 333 19998 383416;383417;383418;383419;383420;383421;383422;383423;383424;383425;383426;383427;383428;383429;383430;383431;383432;383433;383434;383435;383436;383437;383438;383439;383440;383441;383442;383443;383444;383445;383446;383447;383448;383449 234886;234887;234888;234889;234890;234891;234892;234893;234894;234895;234896;234897;234898;234899;234900;234901;234902;234903;234904;234905;234906;234907;234908;234909;234910;234911;234912;234913;234914;234915;234916;234917;234918;234919;234920;234921;234922;234923;234924;234925;234926;234927;234928;234929;234930;234931;234932;234933;234934 234900 49 TVLHYMDVVSVPLCR Unmodified 1787.9062 0.90624632 259 P0A6L4 nanA N-acetylneuraminate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 1 1 2 2 2 2 41.69 39.994 2;3 1.8662E-11 19641 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 197.31 172.46 409710000 67419000 55190000 50364000 0 430780 0 23419000 22339000 15150000 0 0 0 27648000 30303000 35135000 0 0 0 27012000 25608000 29696000 0 0 0 20647 259 19999 383450;383451;383452;383453;383454;383455;383456;383457;383458;383459;383460;383461;383462;383463;383464;383465;383466;383467;383468;383469;383470;383471 234935;234936;234937;234938;234939;234940;234941;234942;234943;234944;234945;234946 234940 12 TVLIPFENK Unmodified 1059.5964 0.59644637 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.622 35.113 2 0.00061972 17440 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.57 89.906 386780000 31821000 25525000 29858000 0 0 176500 39477000 42699000 40582000 1814100 0 0 25531000 23028000 23989000 3157100 1846000 2271500 31982000 31832000 28863000 871050 905690 552910 20648 536 20000 383472;383473;383474;383475;383476;383477;383478;383479;383480;383481;383482;383483;383484;383485;383486;383487;383488;383489;383490;383491 234947;234948;234949;234950;234951;234952;234953;234954;234955;234956;234957;234958 234947 12 TVLIPFENKR Unmodified 1215.6976 0.69755739 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 2 2 1 27.148 25.924 2;3 2.947E-05 8362 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 152.47 147.85 1031000000 40740000 46716000 37072000 2723700 4723100 5593500 60493000 54041000 58320000 40633000 55947000 59757000 36330000 31828000 35061000 100710000 71173000 75702000 54177000 51718000 43050000 25210000 22269000 17021000 20649 536 20001 383492;383493;383494;383495;383496;383497;383498;383499;383500;383501;383502;383503;383504;383505;383506;383507;383508;383509;383510;383511;383512;383513;383514;383515;383516;383517;383518;383519;383520;383521;383522;383523;383524;383525;383526;383527;383528;383529;383530 234959;234960;234961;234962;234963;234964;234965;234966;234967;234968;234969;234970;234971;234972;234973;234974;234975;234976 234960 13 TVLITLGSR Unmodified 958.58113 0.58113065 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.034 29.678 2 5.8572E-05 14385 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.81 119.29 394650000 20615000 20214000 26042000 0 0 0 34756000 33036000 32286000 0 0 0 37253000 36583000 41598000 0 0 0 35890000 37743000 38632000 0 0 0 20650 528 20002 383531;383532;383533;383534;383535;383536;383537;383538;383539;383540;383541;383542 234977;234978;234979;234980;234981;234982;234983;234984;234985;234986;234987;234988 234977 12 TVLTEFNR Unmodified 978.51345 0.51344502 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.091 23.901 2 0.0019651 10787 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 104.45 49.923 1651700000 0 0 0 976630 0 0 162890000 153580000 153570000 31657000 26280000 25880000 153650000 127010000 137210000 0 0 0 230210000 197540000 212560000 13035000 12343000 13321000 20651 882 20003 383543;383544;383545;383546;383547;383548;383549;383550;383551;383552;383553;383554;383555;383556;383557;383558 234989;234990;234991;234992;234993 234989 1 TVLTILHQA Unmodified 994.58113 0.58113065 109 P05194 aroD 3-dehydroquinate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 32.565 31.312 2 0.00082064 14768 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 100.39 96.074 214980000 36098000 32012000 26366000 0 0 0 0 0 0 0 0 0 21498000 17193000 15122000 0 0 0 20567000 24334000 21790000 0 0 0 20652 109 20004 383559;383560;383561;383562;383563;383564;383565;383566;383567 234994;234995;234996;234997;234998;234999;235000 234998 7 TVLTNLLDSDDVR Unmodified 1459.7518 0.75183739 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.602 43.087 2 1.1409E-12 21366 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 196.48 150.02 709260000 85804000 89170000 71786000 0 0 0 48231000 42022000 35881000 0 0 0 48466000 43423000 44612000 0 0 0 69293000 68803000 61772000 0 0 0 20653 232 20005 383568;383569;383570;383571;383572;383573;383574;383575;383576;383577;383578;383579 235001;235002;235003;235004;235005;235006;235007;235008;235009;235010;235011;235012 235002 12 TVLTNSGVLYITDDGK Unmodified 1694.8727 0.87268081 858 P0AEG6 dsbC Thiol:disulfide interchange protein DsbC yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 1 1 1 1 2 1 1 40.162 38.437 2 2.7461E-10 19008 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 180.18 173.16 269470000 22686000 24784000 19064000 0 0 0 26482000 22583000 17931000 0 0 0 18670000 16208000 20350000 0 0 0 26508000 25737000 28465000 0 0 0 20654 858 20006 383580;383581;383582;383583;383584;383585;383586;383587;383588;383589;383590;383591;383592;383593;383594;383595 235013;235014;235015;235016;235017;235018;235019;235020 235013 5 TVLVGNAAQTLHPIAGQGFNLGMR Unmodified 2464.3009 0.30089683 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.925 41.184 3 0.15058 16586 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 19.755 13.397 164980000 12793000 13261000 8235300 2884900 2754500 2363500 23937000 11157000 11770000 0 4674500 2369800 10635000 8827000 7977300 0 0 0 12307000 14599000 14431000 0 0 0 20655 1259 20007 383596;383597;383598;383599;383600;383601;383602;383603;383604;383605;383606;383607;383608;383609;383610;383611;383612 235021 235021 1 TVMLAFDHGYFQGPTTGLER Unmodified 2239.0732 0.073188303 1822 P76143 lsrF Uncharacterized aldolase LsrF yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 43.491 42.152 3 1.5618E-10 20628 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.69 112.53 433450000 165470000 130950000 137030000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20656 1822 20008 383613;383614;383615 235022 235022 1 TVMLESWR Unmodified 1020.5063 0.50625115 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.73 30.344 2 2.9396E-06 12021 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 182.13 155.52 832400000 27993000 30410000 26184000 11594000 10444000 9546500 65383000 60904000 67187000 17723000 19353000 17152000 49336000 55387000 55890000 5860100 4166300 3779000 86342000 85463000 82870000 15213000 13083000 11133000 20657 1427 20009 383616;383617;383618;383619;383620;383621;383622;383623;383624;383625;383626;383627;383628;383629;383630;383631;383632;383633;383634;383635;383636;383637;383638;383639 235023;235024;235025;235026;235027;235028;235029;235030;235031;235032;235033;235034;235035 235025 13 TVMLNYR Unmodified 895.45857 0.45857268 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 20.923 21.459 2 0.0018969 8591 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.87 112.63 315520000 96441000 79433000 72167000 0 0 0 0 0 0 0 0 0 22280000 20586000 24618000 0 0 0 0 0 0 0 0 0 20658 218 20010 383640;383641;383642;383643;383644;383645 235036;235037;235038 235036 3 TVMSEMGYAMMGSGVASGEDR Unmodified 2164.8897 0.88974591 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 1 2 2 2 2 2 2 2 2 1 44.548 42.889 2;3 1.0313E-42 20935 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 283.07 283.07 427880000 45887000 40576000 43844000 0 962380 0 16537000 28362000 30048000 3926000 7255900 7129900 38991000 34389000 27669000 0 0 0 32453000 35368000 32850000 0 1632200 0 20659 502 20011 383646;383647;383648;383649;383650;383651;383652;383653;383654;383655;383656;383657;383658;383659;383660;383661;383662;383663;383664;383665;383666;383667;383668;383669;383670;383671;383672;383673;383674;383675 235039;235040;235041;235042;235043;235044;235045;235046;235047;235048;235049;235050;235051;235052;235053;235054;235055;235056;235057;235058;235059 235044 21 TVMSEMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGAR Unmodified 4534.0318 0.031801638 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.254 53.839 4 1.6888E-27 21746 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 135.84 135.83 112610000 10105000 5916100 9663100 5284300 5473000 6329100 0 0 0 25223000 23953000 0 0 0 0 0 0 0 0 0 7152600 0 4839200 8674400 20660 502 20012 383676;383677;383678;383679;383680;383681;383682;383683;383684;383685;383686 235060 235060 1 TVNAGHETNALAVANK Unmodified 1608.822 0.82198264 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 2 2 2 1 1 2 2 2 1 13.881 14.681 2;3 5.2249E-50 4649 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 290.26 283 1542000000 0 0 0 0 394960 329810 110980000 110560000 112350000 0 0 0 144750000 147510000 153880000 637070 1078100 0 250140000 270210000 237220000 0 1987300 0 20661 1124 20013 383687;383688;383689;383690;383691;383692;383693;383694;383695;383696;383697;383698;383699;383700;383701;383702;383703;383704;383705;383706;383707;383708;383709 235061;235062;235063;235064;235065;235066;235067;235068;235069;235070;235071;235072;235073;235074;235075;235076;235077;235078 235066 18 TVNLSFR Unmodified 835.4552 0.45520186 1769 P75777 ybhG UPF0194 membrane protein YbhG yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 30.169 28.935 2 0.16216 12885 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 43.047 21.344 22150000 0 0 0 0 0 0 0 0 0 0 0 0 5476600 4899800 3860800 0 0 0 2091000 2628000 3193900 0 0 0 20662 1769 20014 383710;383711;383712;383713;383714;383715 235079 235079 1 TVNMMELIR Unmodified 1105.5624 0.56238582 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.085 39.454 2 7.4327E-06 19595 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 170.3 160.31 4827900000 127820000 112890000 104770000 32233000 31763000 25234000 369510000 366950000 386880000 146860000 124540000 119580000 401290000 376510000 341170000 38774000 24751000 30700000 449550000 456060000 473720000 88733000 101020000 96594000 20663 646 20015 383716;383717;383718;383719;383720;383721;383722;383723;383724;383725;383726;383727;383728;383729;383730;383731;383732;383733;383734;383735;383736;383737;383738;383739;383740 235080;235081;235082;235083;235084;235085;235086;235087;235088;235089;235090;235091;235092;235093;235094;235095;235096;235097;235098;235099;235100;235101;235102;235103;235104;235105 235089 26 TVNNDTLTIR Unmodified 1145.6041 0.60405094 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.694 20.084 2 2.2238E-05 7783 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 148.52 122.14 337840000 13405000 13104000 16637000 0 0 0 4786800 3913500 4984800 0 0 0 77745000 69345000 59080000 952720 662850 970220 26048000 20906000 25303000 0 0 0 20664 1513 20016 383741;383742;383743;383744;383745;383746;383747;383748;383749;383750;383751;383752;383753;383754;383755 235106;235107;235108;235109;235110;235111;235112;235113;235114 235108 9 TVNQFYLEQHK Unmodified 1405.699 0.69901396 1646 P62601 treF Cytoplasmic trehalase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 19.263 19.555 3 0.00092119 7757 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 74.53 73.395 55568000 6555800 5904700 6969400 0 0 0 13590000 9291000 9575100 1148400 1000000 0 0 0 1533400 0 0 0 0 0 0 0 0 0 20665 1646 20017 383756;383757;383758;383759;383760;383761;383762;383763;383764 235115;235116 235115 2 TVNVADIESVVAR Unmodified 1371.7358 0.73579339 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.596 39.892 2 9.9093E-11 19258 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 168.69 136.75 264300000 44898000 38102000 0 0 0 0 20312000 19764000 19148000 11815000 11745000 11884000 11943000 14726000 11225000 1807900 1434600 0 11780000 13125000 11525000 3101800 2718400 3251100 20666 658 20018 383765;383766;383767;383768;383769;383770;383771;383772;383773;383774;383775;383776;383777;383778;383779;383780;383781;383782;383783;383784 235117;235118;235119;235120;235121;235122;235123;235124;235125;235126 235123 10 TVPAQTR Unmodified 771.4239 0.42390173 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 10.164 10.979 2 0.026174 2458 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 70.912 58.36 90877000 27605000 18927000 18345000 0 0 0 0 0 0 0 0 0 1694500 1841300 0 0 0 0 11772000 0 10692000 0 0 0 20667 1429 20019 383785;383786;383787;383788;383789;383790;383791 235127 235127 1 TVPASQIVAIVR Unmodified 1252.7503 0.75032125 1523 P39315 qorB Quinone oxidoreductase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.929 35.255 2 6.9282E-05 16921 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 102.62 83.351 221870000 29806000 26380000 23298000 0 0 0 23883000 27623000 23904000 0 0 0 8631000 10144000 10483000 0 0 0 13824000 11040000 12857000 0 0 0 20668 1523 20020 383792;383793;383794;383795;383796;383797;383798;383799;383800;383801;383802;383803 235128;235129;235130;235131;235132;235133;235134;235135;235136 235135 9 TVPFVSK Unmodified 776.44324 0.44324019 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 20.713 21.063 2 0.018546 8168 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 78.616 69.883 964760000 227510000 177040000 195850000 0 0 0 0 0 4756300 0 0 0 28387000 24922000 20008000 0 0 0 80693000 95941000 97772000 3753900 4240800 3892700 20669 65 20021 383804;383805;383806;383807;383808;383809;383810;383811;383812;383813;383814;383815;383816 235137;235138;235139;235140;235141;235142;235143;235144;235145 235143 9 TVPLIQAALK Unmodified 1052.6594 0.65938097 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.101 35.239 2 0.0030688 17007 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 75.213 67.522 176910000 13549000 12196000 10091000 0 1385200 1177400 12545000 11273000 10948000 2222600 3012200 2699100 11904000 11965000 12501000 0 0 0 18073000 18609000 17758000 2001800 1863600 1136100 20670 121 20022 383817;383818;383819;383820;383821;383822;383823;383824;383825;383826;383827;383828;383829;383830;383831;383832;383833;383834;383835;383836 235146;235147;235148;235149;235150;235151;235152;235153;235154 235150 9 TVPMFNEALAELNK Unmodified 1575.7967 0.79667909 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 48.916 47.728 2;3 8.3257E-06 22948 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.76 130.69 3741800000 490120000 518310000 419320000 18471000 19199000 17223000 121510000 139930000 122850000 66876000 64844000 80559000 203740000 196770000 181630000 38937000 32763000 29396000 268370000 279860000 270980000 57014000 52593000 50538000 20671 373 20023 383837;383838;383839;383840;383841;383842;383843;383844;383845;383846;383847;383848;383849;383850;383851;383852;383853;383854;383855;383856;383857;383858;383859;383860;383861;383862;383863;383864;383865;383866;383867;383868;383869;383870;383871;383872;383873;383874;383875;383876;383877;383878;383879;383880;383881;383882;383883;383884;383885 235155;235156;235157;235158;235159;235160;235161;235162;235163;235164;235165;235166;235167;235168;235169;235170;235171;235172;235173;235174;235175;235176;235177;235178;235179;235180;235181;235182;235183;235184;235185;235186;235187;235188;235189;235190;235191;235192;235193;235194;235195;235196;235197;235198;235199;235200;235201;235202;235203;235204;235205 235181 51 TVPPRPTEQGQK Unmodified 1336.7099 0.709913 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 1 By MS/MS By matching By MS/MS 2 1 1 11.281 11.222 2;3 0.0011566 2267 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 52.693 49.65 29281000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12078000 8023800 9179600 0 0 0 0 0 0 20672 456 20024 383886;383887;383888;383889 235206;235207 235207 2 TVPTLDNWQLDLQGISDK Unmodified 2042.032 0.032034995 138 P06986 hisC Histidinol-phosphate aminotransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 52.63 51.379 2 0.00023721 24278 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 83.769 80.139 125160000 21256000 0 16546000 0 0 0 9669900 11688000 0 0 0 0 8872500 9623900 9030500 0 0 0 16139000 9704400 12626000 0 0 0 20673 138 20025 383890;383891;383892;383893;383894;383895;383896;383897;383898;383899 235208;235209;235210 235209 0 TVPWMPSER Unmodified 1101.5277 0.52771487 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 31.773 30.469 2 0.0032424 14144 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 82.279 77.949 39294000 0 0 18871000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9661400 10761000 0 0 0 0 20674 162 20026 383900;383901;383902 235211;235212 235212 2 TVPYEVAEIRPQVGGIIIK Unmodified 2081.1885 0.18847606 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.921 41.078 3 0.0033085 16497 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 54.253 49.275 263230000 22446000 15178000 21486000 3799200 4252900 3150400 42174000 37664000 32790000 21058000 23931000 16463000 5485300 2836500 3698700 0 0 0 4386600 2431300 0 0 0 0 20675 1477 20027 383903;383904;383905;383906;383907;383908;383909;383910;383911;383912;383913;383914;383915;383916;383917;383918;383919 235213;235214;235215;235216;235217;235218;235219;235220 235214 7 TVQAALDIAR Unmodified 1056.5928 0.59275797 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.286 25.053 2 3.8242E-05 11183 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 119.75 72.68 483920000 77671000 72423000 64705000 2163900 1687400 2024600 69800000 0 0 1612000 1901900 1951800 58839000 57579000 0 0 0 457070 69131000 0 0 0 1031200 943490 20676 948 20028 383920;383921;383922;383923;383924;383925;383926;383927;383928;383929;383930;383931;383932;383933;383934;383935;383936;383937;383938;383939;383940 235221;235222;235223;235224;235225;235226;235227;235228;235229;235230;235231;235232 235226 9 TVQGNVMLHQR Unmodified 1281.6612 0.66118866 1092 P13857 rimL Ribosomal-protein-serine acetyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 13.238 14.027 2 0.00030672 4328 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.64 86.97 18423000 5421000 4042900 5433500 0 0 0 0 3526000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20677 1092 20029 383941;383942;383943;383944 235233 235233 1 TVQQAIDEGYR Unmodified 1278.6204 0.62042929 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 18.352 18.687 2;3 1.5253E-07 8072 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 169.41 165.25 564870000 14176000 8634600 8540000 943070 995470 0 145090000 140140000 130160000 3053500 2954300 3347000 14965000 0 14566000 0 0 0 27775000 21477000 26481000 0 1571700 0 20678 997 20030 383945;383946;383947;383948;383949;383950;383951;383952;383953;383954;383955;383956;383957;383958;383959;383960;383961;383962;383963;383964;383965 235234;235235;235236;235237;235238;235239;235240;235241;235242;235243;235244 235240 11 TVRPMFLQFIEPSK Unmodified 1691.9069 0.90689824 425 P0A8F4 udk Uridine kinase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 47.179 45.141 3 0.00026127 17969 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 71.344 67.31 17438000 0 0 0 0 0 0 0 0 6402900 4629700 2912600 3492400 0 0 0 0 0 0 0 0 0 0 0 0 20679 425 20031 383966;383967;383968;383969 235245;235246;235247 235247 3 TVSEFITR Unmodified 951.50255 0.50254598 420 P0A8D6 ymdB O-acetyl-ADP-ribose deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.798 22.269 2 0.0010062 9343 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.91 76.885 260920000 39016000 34768000 30886000 0 0 0 24238000 30757000 35018000 0 0 0 10022000 11550000 9120000 0 0 0 12337000 13735000 9471400 0 0 0 20680 420 20032 383970;383971;383972;383973;383974;383975;383976;383977;383978;383979;383980;383981 235248;235249;235250 235249 3 TVSGFGNR Unmodified 836.41407 0.41406533 1331 P29217 yceH UPF0502 protein YceH yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 12.404 13.29 2 0.0057635 4034 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.086 69.933 458250000 28954000 36150000 28802000 0 1477900 1413000 48554000 41307000 36028000 0 0 0 42270000 44304000 42571000 0 0 0 36959000 37476000 31988000 0 0 0 20681 1331 20033 383982;383983;383984;383985;383986;383987;383988;383989;383990;383991;383992;383993;383994;383995;383996 235251;235252;235253;235254;235255;235256;235257;235258;235259 235256 7 TVSIISGGNIDLSR Unmodified 1430.7729 0.77290718 1015 P0AGF6 tdcB L-threonine dehydratase catabolic TdcB yes yes 0 0 0 By matching By MS/MS 1 1 37.165 35.487 2 0.089933 17184 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 55.04 43.193 10296000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4247800 6048600 0 0 0 0 20682 1015 20034 383997;383998 235260 235260 0 TVSLITDAR Unmodified 974.53966 0.53965977 1920 P77596 yagF Uncharacterized protein YagF yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 23.105 22.536 2 0.042309 9589 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 56.378 49.148 18606000 3867100 6332000 0 0 0 0 0 0 0 0 0 0 2450400 0 3566200 0 0 0 2390700 0 0 0 0 0 20683 1920 20035 383999;384000;384001;384002;384003 235261 235261 1 TVSVDAGDIAAFNDLK Unmodified 1634.8152 0.81516593 1561 P42904 agaV N-acetylgalactosamine-specific phosphotransferase enzyme IIB component 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.779 42.125 2 0.00010635 20522 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 99.531 75.544 36784000 0 9532500 4870200 0 0 0 5713200 4794800 6890200 0 0 0 0 0 0 0 0 0 0 4982600 0 0 0 0 20684 1561 20036 384004;384005;384006;384007;384008;384009 235262;235263 235263 2 TVSVGGEVGK Unmodified 931.49746 0.4974606 1968 Q46938 kduI 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.147 14.081 2 0.0031968 4110 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 74.464 36.906 58986000 5400200 6230000 5205400 660690 752580 1266000 0 6731800 0 0 0 0 5714100 4929600 5998700 0 0 0 5518800 5779200 4799000 0 0 0 20685 1968 20037 384010;384011;384012;384013;384014;384015;384016;384017;384018;384019;384020;384021;384022 235264;235265;235266;235267;235268 235267 4 TVSYDSYQNAFIDLK Unmodified 1762.8414 0.84138068 1350 P30860 artJ ABC transporter arginine-binding protein 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 44.122 42.727 2 0.055318 20914 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 58.098 54.221 22952000 3541200 7057100 4298700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4303200 3751400 0 0 0 0 20686 1350 20038 384023;384024;384025;384026;384027 235269 235269 0 TVTELLQGR Unmodified 1015.5662 0.56620887 1782 P75838 ycaO Ribosomal protein S12 methylthiotransferase accessory factor YcaO yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 26.837 25.609 2 0.12369 11589 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 44.349 21.609 469920000 0 0 0 0 0 0 45067000 43096000 37846000 0 0 0 44250000 46206000 42655000 0 0 0 72745000 69045000 69011000 0 0 0 20687 1782 20039 384028;384029;384030;384031;384032;384033;384034;384035;384036 235270 235270 0 TVTHMQDEAANFPDPVDR Unmodified 2041.9164 0.91635331 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 1 2 2 2 2 2 1 1 2 2 2 1 1 1 28.557 27.274 2;3 1.2951E-56 12894 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 360.81 360.81 8640200000 665190000 585730000 534740000 4420600 2772300 3612700 594060000 692590000 724020000 12877000 11239000 12311000 808820000 820730000 726180000 23083000 13049000 12119000 769920000 850310000 758750000 4899500 4500000 4311200 20688 674 20040 384037;384038;384039;384040;384041;384042;384043;384044;384045;384046;384047;384048;384049;384050;384051;384052;384053;384054;384055;384056;384057;384058;384059;384060;384061;384062;384063;384064;384065;384066;384067;384068;384069;384070;384071;384072;384073;384074;384075 235271;235272;235273;235274;235275;235276;235277;235278;235279;235280;235281;235282;235283;235284;235285;235286;235287;235288;235289;235290;235291;235292;235293;235294;235295;235296;235297;235298;235299;235300;235301;235302;235303;235304;235305 235277 35 TVTHMQDEAANFPDPVDR Oxidation (M) 2057.9113 0.91126793 674 P0ABS1 dksA RNA polymerase-binding transcription factor DksA yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.438 23.512 3 4.3814E-07 10834 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.89 99.905 158200000 10627000 11283000 8409100 0 0 0 21336000 19857000 13959000 0 0 0 11527000 11283000 9816400 0 0 0 12546000 11818000 15739000 0 0 0 20689 674 20040 384076;384077;384078;384079;384080;384081;384082;384083;384084;384085;384086;384087 235306;235307;235308;235309;235310;235311;235312;235313;235314;235315;235316;235317;235318;235319;235320;235321 235307 372 16 TVTLLFPSTGENR Unmodified 1433.7514 0.75144346 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 4 3 3 1 2 2 2 4 3 1 1 1 3 3 3 39.258 37.763 2;3 2.0849E-17 17588 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 210.27 202.89 9146800000 38163000 34330000 30934000 0 0 1144200 39849000 40030000 35881000 1191400000 1044500000 946470000 42438000 44441000 43728000 1397900000 806570000 934400000 58934000 59382000 56891000 725670000 785940000 787810000 20690 1616 20041 384088;384089;384090;384091;384092;384093;384094;384095;384096;384097;384098;384099;384100;384101;384102;384103;384104;384105;384106;384107;384108;384109;384110;384111;384112;384113;384114;384115;384116;384117;384118;384119;384120;384121;384122;384123;384124;384125;384126;384127;384128;384129;384130 235322;235323;235324;235325;235326;235327;235328;235329;235330;235331;235332;235333;235334;235335;235336;235337;235338;235339;235340;235341;235342;235343;235344;235345;235346;235347;235348;235349;235350;235351;235352;235353;235354;235355;235356;235357;235358;235359;235360;235361;235362;235363;235364;235365;235366 235364 45 TVTVSLR Unmodified 774.45995 0.45995289 1759 P69924 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 17.885 18.531 2 0.0020276 6894 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 119.56 46.939 676500000 50543000 56023000 0 1134800 895000 944410 0 72261000 81643000 0 0 0 50296000 53279000 54030000 0 0 0 90414000 85356000 79683000 0 0 0 20691 1759 20042 384131;384132;384133;384134;384135;384136;384137;384138;384139;384140;384141;384142;384143 235367;235368;235369;235370;235371;235372;235373;235374 235370 8 TVTYDFER Unmodified 1029.4767 0.47672516 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.027 22.344 2 0.00029228 9152 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 147.52 120.92 11674000000 1691000000 1467700000 1496600000 4811600 5683000 5221700 603040000 616440000 588310000 0 0 0 668790000 633260000 633130000 0 0 906230 1040700000 1141100000 1077500000 0 0 0 20692 179 20043 384144;384145;384146;384147;384148;384149;384150;384151;384152;384153;384154;384155;384156;384157;384158;384159 235375;235376;235377;235378;235379;235380;235381;235382;235383;235384;235385;235386;235387;235388;235389;235390;235391;235392 235390 18 TVVADGVGQGYK Unmodified 1192.6088 0.60880197 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.506 17.975 2 5.1711E-12 6294 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 195.17 180.87 1590400000 149900000 175730000 164730000 4146200 3289500 3569900 203850000 216550000 186780000 7312300 5636500 5134500 81753000 73553000 76020000 638000 546310 540010 69752000 72034000 59888000 9109200 9644700 10257000 20693 1653 20044 384160;384161;384162;384163;384164;384165;384166;384167;384168;384169;384170;384171;384172;384173;384174;384175;384176;384177;384178;384179;384180;384181;384182;384183;384184;384185 235393;235394;235395;235396;235397;235398;235399;235400;235401;235402;235403;235404;235405;235406;235407;235408;235409;235410;235411;235412 235410 19 TVVADGVGQGYKEVQEISPNLR Unmodified 2358.2179 0.21793829 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 37.335 35.229 3 4.9789E-15 13661 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 135.21 131.26 75466000 0 0 0 5861800 5987900 3602800 0 0 0 6708700 6905000 5352100 0 0 0 0 0 0 0 0 0 13518000 15159000 12370000 20694 1653 20045 384186;384187;384188;384189;384190;384191;384192;384193;384194 235413;235414;235415;235416;235417;235418 235414 6 TVVIDFDIGLR Unmodified 1246.6921 0.69213767 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 2 2 2 3 1 2 3 3 4 2 3 3 3 2 1 3 51.664 50.442 2 0.00017926 17880 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 107.15 45.475 288910000 27900000 24077000 14877000 3541600 2754300 3715100 17069000 13909000 17476000 0 6302100 7264100 24526000 23038000 20482000 0 0 2297800 21938000 23516000 22493000 4476200 2476800 4784700 20695 899 20046 384195;384196;384197;384198;384199;384200;384201;384202;384203;384204;384205;384206;384207;384208;384209;384210;384211;384212;384213;384214;384215;384216;384217;384218;384219;384220;384221;384222;384223;384224;384225;384226;384227;384228;384229;384230;384231;384232;384233;384234;384235;384236;384237;384238;384239;384240;384241;384242 235419;235420;235421;235422;235423;235424;235425;235426;235427;235428;235429;235430;235431;235432;235433;235434;235435;235436;235437;235438;235439;235440;235441;235442;235443;235444;235445;235446;235447;235448;235449;235450;235451 235437 9 TVVLTGSLSQMSR Unmodified 1377.7286 0.72859953 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 31.564 30.505 2 3.842E-06 14281 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 156.48 138.62 130590000 6830300 9703800 9930200 0 0 0 13727000 12063000 14933000 0 0 0 10079000 0 0 4067800 2800200 2659000 12393000 17778000 13630000 0 0 0 20696 1102 20047 384243;384244;384245;384246;384247;384248;384249;384250;384251;384252;384253;384254;384255 235452;235453;235454;235455;235456;235457;235458 235456 3 TVVPVSTLSGPELALQK Unmodified 1737.9877 0.98765098 1281 P26602 ubiC Chorismate pyruvate-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.367 40.642 2 2.0452E-06 19016 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 92.925 79.497 79158000 11216000 10197000 8900200 832790 1361700 977480 6147800 5248800 4369200 0 0 0 3138300 3861300 0 0 0 0 8592900 6861700 7452900 0 0 0 20697 1281 20048 384256;384257;384258;384259;384260;384261;384262;384263;384264;384265;384266;384267;384268;384269 235459;235460;235461;235462;235463;235464 235464 4 TVVPYTSEIYGR Unmodified 1383.7034 0.70343063 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.683 31.288 2 7.3393E-06 14096 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 132.01 129.61 942220000 168500000 147190000 140910000 792290 831070 792200 35841000 38564000 34062000 0 0 0 44641000 48847000 41263000 0 0 0 77156000 83189000 79646000 0 0 0 20698 104 20049 384270;384271;384272;384273;384274;384275;384276;384277;384278;384279;384280;384281;384282;384283;384284 235465;235466;235467;235468;235469;235470;235471;235472;235473;235474;235475;235476 235476 12 TVVTAVSQAVR Unmodified 1129.6455 0.64552182 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 2 1 23.732 22.903 2;3 2.1441E-07 9453 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 164.96 110.41 4620000000 529070000 496910000 470600000 2201700 1464600 1804900 417130000 407860000 429820000 3117000 2611400 2011700 293030000 264030000 296580000 0 0 0 330360000 322550000 344850000 0 0 3990900 20699 94 20050 384285;384286;384287;384288;384289;384290;384291;384292;384293;384294;384295;384296;384297;384298;384299;384300;384301;384302;384303;384304;384305;384306;384307;384308;384309;384310;384311;384312;384313;384314 235477;235478;235479;235480;235481;235482;235483;235484;235485;235486;235487;235488;235489;235490;235491;235492;235493 235491 13 TVVVEGCEEK Unmodified 1148.5383 0.53833914 1672 P64463 ydfZ Putative selenoprotein YdfZ yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 1 12.73 13.444 2 4.6225E-05 4037 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 117.89 108.51 595600000 93173000 83102000 7555200 0 0 0 349170000 0 0 0 0 0 0 0 0 0 0 0 0 0 62597000 0 0 0 20700 1672 20051 384315;384316;384317;384318;384319;384320;384321;384322;384323;384324;384325;384326 235494;235495;235496;235497;235498;235499;235500;235501;235502 235495 9 TVVYAVK Unmodified 778.45889 0.45889025 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.203 16.046 2 0.019405 5559 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.748 21.238 259260000 0 0 0 0 0 0 62579000 63731000 55484000 0 0 0 16384000 15578000 20254000 0 0 0 8351500 9726200 7171100 0 0 0 20701 1861 20052 384327;384328;384329;384330;384331;384332;384333;384334;384335 235503;235504;235505;235506;235507 235504 5 TVVYTAEIDDR Unmodified 1280.6248 0.62484596 1206 P23331 tdk Thymidine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.039 24.038 2 1.5697E-07 10972 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.09 163.99 172510000 0 8609800 7971300 0 0 0 16527000 17741000 15236000 0 0 0 17659000 15110000 12370000 0 0 0 22932000 16560000 21796000 0 0 0 20702 1206 20053 384336;384337;384338;384339;384340;384341;384342;384343;384344;384345;384346;384347 235508;235509;235510;235511;235512;235513;235514;235515;235516;235517;235518;235519;235520 235508 13 TVWEEVSGGLDIMK Unmodified 1562.765 0.76504461 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 2 1 1 1 2 1 2 1 1 1 1 1 1 1 50.764 49.328 2;3 2.0709E-07 24400 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 134.3 125.3 299630000 15662000 9212300 9932700 2326800 0 0 87521000 5529800 102870000 3286700 11288000 0 10494000 0 8904000 0 0 0 11119000 11981000 9500500 0 0 0 20703 561 20054 384348;384349;384350;384351;384352;384353;384354;384355;384356;384357;384358;384359;384360;384361;384362;384363;384364 235521;235522;235523;235524 235521 3 TVWLPWIK Unmodified 1041.6011 0.60113781 1480 P37645 yhjG Uncharacterized protein YhjG yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 52.229 50.9 2 0.087831 25268 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 51.787 32.693 51670000 5785900 6027500 4182600 0 0 0 5183200 5601900 7418700 2033500 3629700 2830000 0 1787000 0 0 0 0 2547700 2672700 1969100 0 0 0 20704 1480 20055 384365;384366;384367;384368;384369;384370;384371;384372;384373;384374;384375;384376;384377 235525 235525 1 TVYLSLDPYMR Unmodified 1356.6748 0.67477304 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 45.145 43.783 2 0.00013204 21239 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 113.74 93.963 196410000 56376000 43023000 44687000 0 0 0 34016000 0 0 0 0 0 5895400 0 0 0 0 0 0 12412000 0 0 0 0 20705 1817 20056 384378;384379;384380;384381;384382;384383 235526;235527 235527 1 TVYSTENPDLLVLEFR Unmodified 1894.9676 0.96764382 334 P0A7D7 purC Phosphoribosylaminoimidazole-succinocarboxamide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 52.307 51.047 2;3 2.0797E-18 25165 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 225.13 200.27 1484400000 308000000 289760000 286060000 6115600 4821500 5739300 56236000 66644000 61949000 3594100 0 0 45328000 51836000 54679000 0 0 0 83445000 75462000 84687000 0 0 0 20706 334 20057 384384;384385;384386;384387;384388;384389;384390;384391;384392;384393;384394;384395;384396;384397;384398;384399;384400;384401;384402;384403;384404;384405;384406;384407;384408;384409;384410;384411;384412;384413 235528;235529;235530;235531;235532;235533;235534;235535;235536;235537;235538;235539;235540;235541;235542;235543;235544;235545 235530 18 TWAWETAFDQIR Unmodified 1522.7205 0.72047768 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.602 51.351 2 1.0147E-16 25318 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 205.83 190.24 378500000 31970000 33796000 32233000 0 0 0 31664000 32766000 33167000 0 0 0 28212000 27244000 30646000 0 0 0 37074000 29919000 29805000 0 0 0 20707 880 20058 384414;384415;384416;384417;384418;384419;384420;384421;384422;384423;384424;384425 235546;235547;235548;235549;235550;235551;235552;235553;235554;235555;235556;235557 235548 12 TWDLIPLCHPLMLSK Unmodified 1822.9474 0.94738285 307 P0A738 moaC Cyclic pyranopterin monophosphate synthase accessory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.955 49.691 3 0.00016265 24521 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.315 61.976 156730000 20207000 24658000 18776000 0 0 0 11930000 16670000 19128000 0 0 0 8259100 8363700 5133800 0 0 0 5692600 8696000 9210400 0 0 0 20708 307 20059 384426;384427;384428;384429;384430;384431;384432;384433;384434;384435;384436;384437 235558;235559;235560;235561;235562;235563;235564;235565;235566 235559 9 TWEEIPALDK Unmodified 1200.6027 0.60265396 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1 2 1 1 2 1 2 37.513 35.766 2 0.00012302 16498 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 128.36 117.21 3194000000 64168000 75222000 52059000 0 0 0 272990000 263590000 281960000 0 0 512070 275730000 306950000 275530000 0 0 0 455930000 446490000 422860000 0 0 0 20709 895 20060 384438;384439;384440;384441;384442;384443;384444;384445;384446;384447;384448;384449;384450;384451;384452;384453;384454;384455 235567;235568;235569;235570;235571;235572;235573;235574;235575;235576;235577;235578;235579;235580;235581;235582;235583;235584;235585 235582 18 TWEEIPALDKELK Unmodified 1570.8243 0.82427405 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.61 35.871 3 0.00051446 17194 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 53.051 52.796 525210000 9786100 6891700 6508200 1046300 560020 918930 53027000 49099000 44517000 0 0 0 48986000 38078000 41604000 0 0 0 76970000 71928000 68642000 2735900 2154400 1756000 20710 895 20061 384456;384457;384458;384459;384460;384461;384462;384463;384464;384465;384466;384467;384468;384469;384470;384471;384472;384473 235586 235586 1 TWFAADK Unmodified 837.4021 0.40210366 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 1 1 23.758 22.993 1;2 0.0035243 10346 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 123.69 91.754 370270000 0 11708000 9081600 0 0 0 100370000 15298000 19004000 0 3404300 3291500 54468000 62430000 0 4618400 2595900 2976300 4885100 41448000 28220000 3681000 0 2786200 20711 25 20062 384474;384475;384476;384477;384478;384479;384480;384481;384482;384483;384484;384485;384486;384487;384488;384489;384490;384491;384492;384493 235587;235588;235589;235590;235591;235592;235593 235591 7 TWFELAPK Unmodified 990.51747 0.51746776 452 P0A8Q0 frdC Fumarate reductase subunit C yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.947 38.01 2 0.017357 15107 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 67.032 61.722 226670000 0 0 3051700 0 0 0 34305000 29666000 34174000 5087500 4152900 5376900 22665000 23962000 25894000 0 0 0 13819000 11174000 12432000 907900 0 0 20712 452 20063 384494;384495;384496;384497;384498;384499;384500;384501;384502;384503;384504;384505;384506;384507 235594;235595;235596;235597;235598;235599;235600 235596 6 TWFVEAK Unmodified 879.44905 0.44905385 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 2 1 2 2 1 28.981 27.681 1;2 0.00059686 12658 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.9 144.12 2359800000 312330000 292950000 266950000 619060 638750 0 232290000 232190000 227540000 0 0 0 106080000 115300000 104820000 0 0 0 161680000 166900000 139560000 0 0 0 20713 423 20064 384508;384509;384510;384511;384512;384513;384514;384515;384516;384517;384518;384519;384520;384521;384522;384523;384524;384525;384526;384527;384528;384529;384530 235601;235602;235603;235604;235605;235606;235607;235608;235609;235610;235611;235612;235613;235614;235615;235616;235617;235618;235619 235612 19 TWGAPYDPHAFLSSMR Unmodified 1834.8461 0.8460889 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 45.184 43.733 3 0.00049903 21556 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 65.716 65.57 257920000 3131500 0 0 0 0 0 31331000 29855000 32517000 0 0 0 23650000 31049000 26194000 0 0 0 30433000 23166000 26588000 0 0 0 20714 1424 20065 384531;384532;384533;384534;384535;384536;384537;384538;384539;384540 235620 235620 1 TWGCQMNEYDSSK Unmodified 1604.6235 0.62354211 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.482 22.654 2 1.4045E-09 9827 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 177.57 177.57 274590000 27385000 23881000 22674000 1450000 2171500 1662700 15391000 13675000 15402000 3171300 3328400 3462000 21497000 16954000 13444000 0 0 0 27355000 26317000 29089000 2024500 1963000 2296400 20715 862 20066 384541;384542;384543;384544;384545;384546;384547;384548;384549;384550;384551;384552;384553;384554;384555;384556;384557;384558;384559;384560;384561 235621;235622;235623;235624;235625;235626;235627;235628;235629;235630;235631;235632 235624 12 TWGVPMSLFVHK Unmodified 1400.7275 0.72747731 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.685 44.228 3 1.3228E-05 21332 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 86.243 74.66 668010000 82252000 87221000 68221000 0 0 0 47865000 40580000 43537000 0 0 0 35378000 36457000 34317000 0 0 0 64217000 64678000 63290000 0 0 0 20716 58 20067 384562;384563;384564;384565;384566;384567;384568;384569;384570;384571;384572;384573 235633;235634;235635;235636;235637;235638;235639;235640;235641;235642;235643;235644 235638 12 TWIQLAK Unmodified 858.49634 0.49633839 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 2 2 1 1 2 1 30.071 28.624 1;2 0.019405 13363 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 77.748 59.122 312130000 27684000 23247000 22586000 0 0 0 26908000 23167000 26777000 1334100 1061500 0 25376000 23721000 20144000 0 0 0 33333000 29189000 27603000 0 0 0 20717 1550 20068 384574;384575;384576;384577;384578;384579;384580;384581;384582;384583;384584;384585;384586;384587;384588;384589;384590;384591 235645;235646;235647;235648;235649;235650;235651;235652;235653;235654;235655 235649 10 TWLLAQADFLVK Unmodified 1403.7813 0.78128702 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 52.73 51.229 2;3 0.00010015 26213 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.297 83.145 74434000 0 0 0 2742600 3597900 3215400 13904000 10905000 12049000 7476300 7784900 9255100 0 0 0 0 0 0 0 0 3503600 0 0 0 20718 201 20069 384592;384593;384594;384595;384596;384597;384598;384599;384600;384601 235656;235657;235658;235659;235660;235661 235658 6 TWLLWCER Unmodified 1162.5593 0.55934935 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 47.026 45.493 2 0.01238 22219 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.213 67.281 25489000 4103400 0 2982400 0 0 0 3615800 0 0 0 1224900 1464700 0 0 0 0 0 0 4103300 3197300 4796800 0 0 0 20719 1932 20070 384602;384603;384604;384605;384606;384607;384608;384609 235662;235663 235663 1 TWLQQSLNWPQFVQSEEDTRK Unmodified 2619.2718 0.27176477 1092 P13857 rimL Ribosomal-protein-serine acetyltransferase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 50.272 49.15 3 6.584E-05 23663 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 79.293 76.751 37323000 0 0 13773000 0 1349900 0 0 0 12182000 0 0 2261400 0 0 0 7756200 0 0 0 0 0 0 0 0 20720 1092 20071 384610;384611;384612;384613;384614 235664;235665 235665 1 TWLVTGSPGGSR Unmodified 1216.62 0.62003536 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 28.355 26.967 2 0.0015627 12638 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 89.08 82.775 90265000 0 14374000 14671000 0 0 0 19426000 22721000 19073000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20721 1155 20072 384615;384616;384617;384618;384619 235666;235667;235668 235668 3 TWNSAQLVGK Unmodified 1102.5771 0.57710791 1514 P39187 ytfJ Uncharacterized protein YtfJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.989 23.084 2 0.00048825 10056 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 99.802 95.817 409340000 98834000 79329000 71213000 329820 0 0 19049000 18201000 17954000 0 0 0 15697000 13882000 13053000 0 0 0 23308000 18827000 19663000 0 0 0 20722 1514 20073 384620;384621;384622;384623;384624;384625;384626;384627;384628;384629;384630;384631;384632 235669;235670;235671;235672;235673;235674;235675;235676;235677;235678 235673 10 TWPGDEK Unmodified 831.37628 0.37628284 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 2 1 1 15.128 15.353 2 0.062252 4023 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 60.799 60.799 37526000 7792700 5022900 0 0 0 0 0 0 0 0 6797400 6728200 0 0 0 3643500 2642100 1481800 0 0 0 1701700 0 1715400 20723 30 20074 384633;384634;384635;384636;384637;384638;384639;384640;384641;384642 235679;235680;235681;235682 235679 4 TWQDLADYAAK Unmodified 1280.6037 0.60371659 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 2 1 2 2 2 2 2 2 2 1 1 37.584 35.853 2;3 0.000718 17404 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 108.15 106.53 8374300000 102090000 95581000 104660000 1410700 1267200 1290500 728520000 593060000 598560000 0 0 0 720030000 716360000 748660000 0 0 0 1324500000 1285500000 1350700000 818860 1214100 0 20724 993 20075 384643;384644;384645;384646;384647;384648;384649;384650;384651;384652;384653;384654;384655;384656;384657;384658;384659;384660;384661;384662;384663;384664;384665;384666;384667 235683;235684;235685;235686;235687;235688;235689;235690;235691;235692;235693;235694;235695;235696;235697;235698;235699;235700;235701;235702;235703;235704;235705;235706;235707;235708 235699 26 TWQDNGGALAECAILYR Unmodified 1936.9101 0.91014572 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 43.403 43.526 3 0.0040779 15466 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 61.641 51.853 11103000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2929200 5109500 3064500 0 0 0 0 0 0 20725 80 20076 384668;384669;384670 235709 235709 0 TWQEQTAELGK Unmodified 1289.6252 0.62518031 203 P09148 galT Galactose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.765 22.236 2 0.00019248 9306 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.86 119.41 151330000 19115000 19606000 19343000 0 0 0 17791000 16529000 18367000 0 0 0 6999500 4405600 6506000 0 0 0 6952600 7942800 7773400 0 0 0 20726 203 20077 384671;384672;384673;384674;384675;384676;384677;384678;384679;384680;384681;384682 235710;235711;235712;235713;235714 235713 4 TWQTQPALLTASVALYR Unmodified 1918.0312 0.031247134 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 51.153 49.892 3 0.064681 23436 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 34.262 30.726 161690000 0 0 0 0 0 0 30983000 22558000 20541000 0 0 0 10447000 9882200 8139600 0 0 0 30146000 16773000 12224000 0 0 0 20727 597 20078 384683;384684;384685;384686;384687;384688;384689;384690;384691 235715 235715 1 TWTDKGVQCDLAMIGSK Unmodified 1908.9074 0.90736853 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 35.422 34.028 3 6.7695E-05 11507 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 78.234 71.284 50852000 0 0 0 4178000 4272200 3977100 0 0 0 8434600 8075100 9906500 0 0 0 3418100 4092200 4498300 0 0 0 0 0 0 20728 644 20079 384692;384693;384694;384695;384696;384697;384698;384699;384700 235716;235717;235718;235719;235720;235721 235716 6 TWTFTLR Unmodified 923.4865 0.48650199 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 38.82 37.118 2 0.0017267 18568 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.89 118.06 56358000 0 0 0 0 0 0 7314400 0 8478700 0 0 0 6189200 6094000 5990300 0 0 0 7121200 8441700 6728900 0 0 0 20729 1424 20080 384701;384702;384703;384704;384705;384706;384707;384708;384709 235722;235723;235724;235725;235726 235722 5 TWTGGPLNYK Unmodified 1135.5662 0.56620887 1911 P77522 sufB FeS cluster assembly protein SufB yes yes 0 0 0 By matching By MS/MS 1 1 27.644 26.418 2 0.12392 12293 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 41.631 33.411 32017000 11981000 0 0 0 0 0 0 0 20036000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20730 1911 20081 384710;384711 235727 235727 0 TWTGQGR Unmodified 804.38785 0.38785057 729;728 P0ACG1;P0ACF8 stpA;hns DNA-binding protein StpA;DNA-binding protein H-NS no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.716 12.266 2 0.00059133 3197 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.07 150.07 10186000000 770230000 631910000 854180000 0 0 0 905260000 753380000 743610000 12893000 10640000 12506000 708460000 685390000 590290000 320020000 462330000 422460000 764760000 787450000 737850000 5998400 6577600 0 20731 729;728 20082 384712;384713;384714;384715;384716;384717;384718;384719;384720;384721;384722;384723;384724;384725;384726;384727;384728;384729;384730;384731 235728;235729;235730;235731;235732;235733;235734;235735;235736;235737;235738;235739;235740;235741;235742 235732 14 TYCTTTWGVTFPMFSK Unmodified 1925.8692 0.86919211 123 P06610 btuE Vitamin B12 transport periplasmic protein BtuE yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 1 1 1 53.488 52.012 2;3 2.0414E-08 25923 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 147.87 144.83 441940000 109420000 88230000 87794000 0 0 0 45837000 49995000 48117000 0 0 0 4171300 4351700 4026800 0 0 0 0 0 0 0 0 0 20732 123 20083 384732;384733;384734;384735;384736;384737;384738;384739;384740;384741;384742;384743;384744;384745;384746;384747 235743;235744;235745;235746;235747;235748;235749 235743 7 TYDDDPTK Unmodified 953.39781 0.39780614 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.232 12.065 2 0.0036566 3121 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.308 90.308 934910000 121270000 113850000 124850000 0 0 0 65669000 70293000 76589000 0 0 0 72660000 58841000 55238000 0 0 0 63583000 48603000 63461000 0 0 0 20733 874 20084 384748;384749;384750;384751;384752;384753;384754;384755;384756;384757;384758;384759 235750;235751;235752;235753;235754;235755;235756 235751 7 TYDDDPTKYQDLR Unmodified 1628.7318 0.73183023 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 21.392 21.728 2;3 1.2588E-23 8989 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 234.39 233.49 542920000 68656000 72985000 58076000 809430 749200 607200 48692000 43490000 49673000 0 0 0 28815000 29429000 26068000 0 0 0 37671000 41182000 36013000 0 0 0 20734 874 20085 384760;384761;384762;384763;384764;384765;384766;384767;384768;384769;384770;384771;384772;384773;384774;384775;384776;384777;384778;384779;384780;384781;384782;384783;384784;384785;384786 235757;235758;235759;235760;235761;235762;235763;235764;235765;235766;235767;235768;235769;235770;235771 235757 15 TYDFADAPTK Unmodified 1127.5135 0.5135046 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 22.993 22.37 2 0.00064039 9785 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 89.886 85.13 69949000 0 0 0 0 0 0 19550000 20176000 21209000 0 0 0 2951900 3270400 2793300 0 0 0 0 0 0 0 0 0 20735 1318 20086 384787;384788;384789;384790;384791;384792 235772;235773;235774;235775 235772 2 TYDGIHR Unmodified 860.41407 0.41406533 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 10.927 11.769 2 0.0067527 3018 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 94.163 73.303 630110000 0 0 0 0 0 0 71602000 74948000 7650200 0 0 0 84081000 0 80919000 0 0 0 96259000 114240000 100420000 0 0 0 20736 834 20087 384793;384794;384795;384796;384797;384798;384799;384800 235776;235777;235778;235779;235780;235781 235778 6 TYDLEVWIPAQNTYR Unmodified 1867.9105 0.9104633 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 50.191 48.787 2;3 1.5895E-15 23727 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 241.39 233.28 3000600000 230940000 204010000 191030000 0 719230 0 347120000 323900000 283070000 0 0 0 244020000 214600000 222930000 0 0 0 247600000 238110000 252580000 0 0 0 20737 441 20088 384801;384802;384803;384804;384805;384806;384807;384808;384809;384810;384811;384812;384813;384814;384815;384816;384817;384818;384819;384820;384821;384822;384823;384824;384825 235782;235783;235784;235785;235786;235787;235788;235789;235790;235791;235792;235793;235794;235795;235796;235797;235798;235799;235800;235801;235802;235803;235804;235805 235790 24 TYDNLADK Unmodified 938.43453 0.434526 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.23 14.096 2 0.029254 4098 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 74.127 49.929 240950000 24281000 20350000 17745000 0 0 0 32228000 40871000 31817000 0 0 0 13170000 13485000 12598000 0 0 0 13791000 11124000 9489400 0 0 0 20738 709 20089 384826;384827;384828;384829;384830;384831;384832;384833;384834;384835;384836;384837 235806;235807;235808 235806 0 TYEIKPDEQFLFHAAAGGVGLIACQWAK Unmodified 3119.5539 0.55387663 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.375 51.936 4 5.1309E-16 25664 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 142.22 141.46 376450000 60781000 62846000 68476000 0 0 0 36513000 39924000 42859000 0 0 0 10605000 15060000 9998400 0 0 0 9092400 11807000 8493000 0 0 0 20739 1316 20090 384838;384839;384840;384841;384842;384843;384844;384845;384846;384847;384848;384849 235809;235810;235811;235812;235813;235814 235811 6 TYGCGSAIASSSLVTEWVK Unmodified 2014.967 0.9669919 721 P0ACD4 iscU Iron-sulfur cluster assembly scaffold protein IscU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 1 1 1 2 2 2 2 2 2 1 2 2 1 1 47.072 45.66 2;3 1.1204E-05 22164 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 121.18 118.53 1470000000 114800000 115410000 113400000 7883800 7457900 6645300 96697000 91933000 100410000 0 0 0 118290000 105300000 114190000 0 0 0 139220000 142650000 146590000 24127000 24976000 0 20740 721 20091 384850;384851;384852;384853;384854;384855;384856;384857;384858;384859;384860;384861;384862;384863;384864;384865;384866;384867;384868;384869;384870;384871;384872;384873;384874;384875;384876;384877;384878 235815;235816;235817;235818;235819;235820;235821;235822;235823;235824;235825;235826;235827;235828;235829;235830 235817 10 TYGGAVLNTAMLTENIHFYK Unmodified 2242.1092 0.10923946 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.168 45.732 3 4.7943E-06 16397 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 88.56 83.943 80717000 5986800 0 5768500 5711300 5109500 5398800 0 4766200 3911600 0 0 0 3918000 5316800 4123000 0 0 0 5483900 4711800 4482700 4860800 5298800 5869000 20741 1933 20092 384879;384880;384881;384882;384883;384884;384885;384886;384887;384888;384889;384890;384891;384892;384893;384894 235831;235832;235833;235834 235833 4 TYGGLDR Unmodified 780.37662 0.37661719 1372 P31554 lptD LPS-assembly protein LptD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 2 2 1 1 1 1 1 2 2 1 1 1 15.225 15.937 2 0.068585 5284 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 59.641 16.868 1984300000 139000000 152140000 130630000 3447900 2432000 2789100 212120000 211930000 196720000 2452200 5081600 0 150650000 139530000 144430000 0 0 0 166650000 187640000 130810000 0 5045300 856290 20742 1372 20093 384895;384896;384897;384898;384899;384900;384901;384902;384903;384904;384905;384906;384907;384908;384909;384910;384911;384912;384913;384914;384915;384916;384917;384918;384919;384920;384921;384922;384923 235835;235836;235837;235838;235839 235836 5 TYGLPTIVTNCSNNYGPYHFPEK Unmodified 2671.2377 0.23768745 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.522 40.823 3 1.6883E-15 20308 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.58 146.69 820510000 33116000 22762000 26704000 0 0 0 64858000 68942000 61858000 0 0 0 70921000 56811000 74448000 0 0 0 121300000 100490000 118290000 0 0 0 20743 1496 20094 384924;384925;384926;384927;384928;384929;384930;384931;384932;384933;384934;384935 235840;235841;235842;235843;235844;235845;235846;235847;235848;235849;235850 235841 11 TYGLPTLITNCSNNYGPYHFPEK Unmodified 2685.2533 0.25333751 1308 P27830 rffG dTDP-glucose 4,6-dehydratase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.077 43.66 3 2.8925E-07 21121 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.08 109.07 124600000 9078600 7186400 5185500 0 0 0 9999500 9072200 11680000 0 0 0 10017000 10036000 11643000 0 0 0 10599000 14425000 15675000 0 0 0 20744 1308 20095 384936;384937;384938;384939;384940;384941;384942;384943;384944;384945;384946;384947 235851;235852;235853 235852 3 TYGSEVLPNHENSK Unmodified 1573.7372 0.73724996 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.393 15.042 3 0.0089657 4983 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 43.69 37.213 90338000 9150200 7999100 6350000 0 0 0 12289000 13374000 9610700 0 0 0 0 0 0 624480 0 0 11475000 9133700 10331000 0 0 0 20745 1155 20096 384948;384949;384950;384951;384952;384953;384954;384955;384956;384957 235854;235855;235856;235857 235855 4 TYGSNSELLLGNAGTVSDLGEDFGHEFYEAELK Unmodified 3561.6424 0.6423531 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 54.096 52.832 3;4 2.2981E-55 21094 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 234.74 229.58 2527300000 0 0 0 6554800 0 0 177600000 215720000 182140000 330930000 332120000 404740000 97929000 99145000 104860000 44795000 36529000 34543000 123930000 98067000 108200000 71279000 53982000 4284500 20746 1088 20097 384958;384959;384960;384961;384962;384963;384964;384965;384966;384967;384968;384969;384970;384971;384972;384973;384974;384975;384976;384977;384978;384979;384980 235858;235859;235860;235861;235862;235863;235864;235865;235866;235867;235868;235869;235870;235871;235872;235873;235874;235875 235870 18 TYHYYSLPLAAK Unmodified 1425.7293 0.72925145 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.829 27.573 3 0.00071456 12522 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 69.721 58.712 629390000 162260000 165490000 146940000 0 0 0 24843000 31354000 29827000 0 0 0 5617800 7699200 7768800 0 0 0 15124000 17044000 15419000 0 0 0 20747 1254 20098 384981;384982;384983;384984;384985;384986;384987;384988;384989;384990;384991;384992 235876;235877;235878;235879;235880 235880 5 TYIGSMPGK Unmodified 952.4688 0.46880301 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.721 18.992 2 0.0035189 7406 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.296 71.78 598870000 53139000 48201000 41285000 0 2578900 2316800 51822000 45619000 54724000 18629000 16228000 15891000 0 0 0 33640000 23402000 28641000 48473000 46962000 46479000 8013300 7267100 5557700 20748 536 20099 384993;384994;384995;384996;384997;384998;384999;385000;385001;385002;385003;385004;385005;385006;385007;385008;385009;385010;385011;385012 235881;235882;235883;235884;235885;235886;235887;235888;235889 235881 9 TYLAVAAAVDALER Unmodified 1461.7827 0.78274359 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.661 49.271 2 5.1569E-08 24330 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 143.79 130.41 134540000 14364000 13103000 13280000 0 0 0 16011000 15286000 13358000 0 3009300 1580900 6462900 4834000 6776000 0 0 0 9012200 8485700 8976900 0 0 0 20749 530 20100 385013;385014;385015;385016;385017;385018;385019;385020;385021;385022;385023;385024;385025;385026 235890;235891;235892;235893;235894;235895;235896;235897;235898 235893 7 TYLQTVMADAYPHLHVTAEK Unmodified 2287.1307 0.13070318 1607 P52129 rnlA mRNA endoribonuclease LS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.112 38.243 4 8.8766E-05 15619 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 70.99 67.328 123380000 5640500 5642100 6771600 535240 0 726580 9447300 8005300 11268000 10871000 8039600 6823200 4385700 5383500 5178200 0 0 0 7183900 11730000 5733200 6128200 2034300 1850400 20750 1607 20101 385027;385028;385029;385030;385031;385032;385033;385034;385035;385036;385037;385038;385039;385040;385041;385042;385043;385044;385045;385046 235899;235900;235901 235899 3 TYLYQETK Unmodified 1044.5128 0.51277632 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 16.946 17.662 2 0.00036979 6372 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 124.08 112.31 1086500000 177590000 152790000 123080000 0 1635600 1375600 111130000 0 98196000 0 0 1800400 73572000 64527000 83852000 0 0 0 0 99241000 95666000 0 0 2100600 20751 696;1097 20102 385047;385048;385049;385050;385051;385052;385053;385054;385055;385056;385057;385058;385059;385060;385061;385062;385063 235902;235903;235904;235905;235906;235907;235908;235909;235910;235911;235912;235913 235905 12 TYLYQGIAER Unmodified 1212.6139 0.61388734 1033 P0C054 ibpA Small heat shock protein IbpA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.136 26.755 2 1.3774E-05 10041 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 152.34 147.89 223060000 0 0 17691000 4229900 4149600 4251200 98128000 0 0 18186000 22340000 19888000 0 0 0 0 3509900 3264200 0 0 0 10008000 9350300 8061000 20752 1033 20103 385064;385065;385066;385067;385068;385069;385070;385071;385072;385073;385074;385075;385076 235914;235915;235916 235916 3 TYMSDCLK Unmodified 1016.4307 0.43070295 955 P0AFM4 psiF Phosphate starvation-inducible protein PsiF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.688 19.253 2 0.01604 7274 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 69.198 66.495 329050000 30749000 27291000 24721000 0 0 0 39779000 34000000 38207000 0 0 0 24702000 31047000 20773000 0 0 0 21298000 18894000 17590000 0 0 0 20753 955 20104 385077;385078;385079;385080;385081;385082;385083;385084;385085;385086;385087;385088 235917;235918;235919;235920;235921;235922;235923;235924 235920 7 TYNESLPPAK Unmodified 1118.5608 0.56078914 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 15.694 16.487 2 0.0042997 5587 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.016 51.476 123560000 8283400 9004500 8107200 0 0 0 15108000 15893000 12984000 0 0 0 12474000 10701000 10934000 0 0 0 20073000 0 0 0 0 0 20754 283 20105 385089;385090;385091;385092;385093;385094;385095;385096;385097;385098;385099 235925;235926;235927;235928;235929;235930;235931;235932;235933 235932 8 TYNGALGVDIHEK Unmodified 1415.7045 0.70449327 38 P00634 phoA Alkaline phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 21.01 21.308 2;3 6.7306E-06 8448 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.24 124.74 460340000 0 0 0 0 0 0 36617000 35483000 30342000 0 0 0 69943000 58616000 63374000 0 0 0 53071000 60221000 52678000 0 0 0 20755 38 20106 385100;385101;385102;385103;385104;385105;385106;385107;385108;385109;385110;385111;385112;385113;385114;385115;385116;385117 235934;235935;235936;235937;235938;235939;235940;235941;235942;235943;235944;235945;235946;235947;235948;235949 235944 15 TYNGALGVDIHEKDHPTILEMAK Unmodified 2551.2741 0.27407296 38 P00634 phoA Alkaline phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 3 1 1 1 2 2 2 1 31.034 29.801 3;4;5 2.6656E-22 13980 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 174.7 174.49 1201400000 0 0 0 0 0 0 85006000 91413000 85169000 0 0 0 199390000 161550000 171050000 1615900 2073800 1706700 127580000 129210000 143930000 0 0 1673500 20756 38 20107 385118;385119;385120;385121;385122;385123;385124;385125;385126;385127;385128;385129;385130;385131;385132;385133;385134;385135;385136;385137;385138;385139;385140;385141 235950;235951;235952;235953;235954;235955;235956;235957;235958;235959;235960;235961;235962;235963;235964;235965;235966;235967;235968;235969;235970 235960 21 TYNIAWWGNNYYDVNELGHISVCPDPDVPEAR Unmodified 3763.7002 0.70015953 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.404 51.964 3 1.6877E-07 24488 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 79.911 78.309 134350000 10985000 9806200 8837100 0 0 0 11743000 9957000 9351400 0 0 0 13355000 13088000 10554000 0 0 0 11980000 13079000 11617000 0 0 0 20757 1172 20108 385142;385143;385144;385145;385146;385147;385148;385149;385150;385151;385152;385153 235971 235971 1 TYNPQDIEQPLYEHWEK Unmodified 2189.0065 0.006548526 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 2 1 37.601 35.897 2;3 9.0661E-25 17674 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 221.66 216.38 2350300000 219900000 201340000 194260000 1131000 1254200 1267100 180440000 164900000 183080000 1867600 3026100 0 171220000 157830000 165920000 0 0 884330 234690000 238080000 227310000 1870600 0 0 20758 158 20109 385154;385155;385156;385157;385158;385159;385160;385161;385162;385163;385164;385165;385166;385167;385168;385169;385170;385171;385172;385173;385174;385175;385176;385177;385178;385179;385180;385181;385182;385183;385184 235972;235973;235974;235975;235976;235977;235978;235979;235980;235981;235982;235983;235984;235985;235986;235987;235988;235989;235990;235991;235992;235993;235994;235995 235975 24 TYPGGVQALR Unmodified 1060.5665 0.56654322 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 21.449 21.264 2 0.0013838 8915 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 85.064 57.539 34445000 0 0 0 1258100 1359200 1782500 14892000 0 0 4217900 3913300 5758000 0 0 0 1264100 0 0 0 0 0 0 0 0 20759 1447 20110 385185;385186;385187;385188;385189;385190;385191;385192;385193 235996;235997;235998;235999 235998 4 TYQQQVAK Unmodified 964.49779 0.49779495 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 10.827 11.63 2 0.0012574 2924 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 110.36 92.977 8064300000 1340700000 1095100000 1124200000 0 0 0 590600000 615480000 625100000 0 0 0 0 413620000 418180000 0 0 0 679730000 582480000 579100000 0 0 0 20760 391 20111 385194;385195;385196;385197;385198;385199;385200;385201;385202;385203;385204 236000;236001;236002;236003;236004;236005;236006;236007;236008;236009 236003 10 TYRGHAADKK Unmodified 1145.5942 0.59415496 371 P0A7U3 rpsS 30S ribosomal protein S19 yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 9.0434 9.1534 3 0.052063 1461 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 42.395 15.066 16677000 0 0 0 0 0 0 0 0 0 2882500 2194800 0 0 0 0 1883200 3646300 1529300 0 0 0 2085400 2455200 0 20761 371 20112 385205;385206;385207;385208;385209;385210;385211 236010 236010 1 TYSINEGNYIK Unmodified 1300.6299 0.62993134 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.815 24.487 2 1.909E-07 10939 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.75 125.19 1106300000 0 0 0 0 0 0 141520000 133800000 139600000 0 1889100 2390100 136810000 0 0 0 0 0 193180000 176690000 180430000 0 0 0 20762 499 20113 385212;385213;385214;385215;385216;385217;385218;385219;385220;385221;385222;385223 236011;236012;236013;236014;236015;236016;236017;236018;236019;236020 236017 10 TYTFHLR Unmodified 936.48175 0.48175096 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 19.897 20.356 2 5.685E-05 7765 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.98 170.53 1285400000 402400000 432770000 416900000 0 657480 566730 0 14684000 17466000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20763 1219 20114 385224;385225;385226;385227;385228;385229;385230;385231;385232;385233 236021;236022;236023;236024;236025;236026;236027;236028 236027 6 TYVGSGR Unmodified 738.36605 0.3660525 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 10.582 11.398 2 0.043452 2722 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 64.236 54.487 162850000 0 79771000 0 0 0 0 41409000 8799000 13823000 0 0 0 0 3542500 0 0 0 0 4726600 4839400 5940300 0 0 0 20764 995 20115 385234;385235;385236;385237;385238;385239;385240;385241 236029 236029 1 TYVPADDYR Unmodified 1098.4982 0.49818889 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 4 2 3 18.863 19.139 2;3 6.8025E-05 7319 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 144.38 144.38 25758000000 642730000 645410000 616390000 2353200000 2876900000 2738200000 889530000 941840000 906300000 324370000 308570000 293330000 547530000 487770000 503290000 84865000 0 65410000 915870000 907620000 926400000 2840000000 2555300000 2387100000 20765 939 20116 385242;385243;385244;385245;385246;385247;385248;385249;385250;385251;385252;385253;385254;385255;385256;385257;385258;385259;385260;385261;385262;385263;385264;385265;385266;385267;385268;385269;385270;385271;385272;385273;385274;385275;385276 236030;236031;236032;236033;236034;236035;236036;236037;236038;236039;236040;236041;236042;236043;236044;236045;236046;236047;236048;236049;236050;236051;236052;236053;236054;236055;236056;236057;236058;236059;236060;236061;236062;236063;236064;236065;236066;236067;236068;236069;236070;236071;236072;236073;236074;236075;236076;236077;236078 236040 49 TYVVMEEVK Unmodified 1096.5474 0.54744726 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.753 24.866 2 0.00086921 7733 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 99.139 81.845 465810000 77534000 72040000 64381000 1537800 1062500 987600 9449700 0 7667500 0 0 0 10351000 6804800 0 62364000 60073000 64519000 10415000 9203000 7417300 0 0 0 20766 733 20117 385277;385278;385279;385280;385281;385282;385283;385284;385285;385286;385287;385288;385289;385290;385291;385292 236079;236080;236081;236082;236083;236084;236085 236081 7 TYWSPEAIER Unmodified 1250.5932 0.5931519 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.23 30.89 2 0.0056025 14768 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 70.816 69.164 111610000 17336000 16834000 15900000 0 0 0 7604100 5423600 8789700 0 0 0 6229700 6785200 3843200 0 0 0 6499700 8495000 7867100 0 0 0 20767 1758 20118 385293;385294;385295;385296;385297;385298;385299;385300;385301;385302;385303;385304 236086;236087 236087 0 TYYSIGGGFIVDEEHFGQDAANEVSVPYPFK Unmodified 3435.5936 0.59355242 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.836 52.409 3 1.1832E-17 25912 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.81 138.02 251600000 11728000 12844000 12541000 0 0 3452900 29804000 29886000 23490000 0 0 5525000 16780000 11495000 18859000 0 0 0 31501000 21486000 22204000 0 0 0 20768 1117 20119 385305;385306;385307;385308;385309;385310;385311;385312;385313;385314;385315;385316;385317;385318 236088;236089;236090;236091;236092;236093 236088 6 VAAAGDLFVAVVGHQADGR Unmodified 1851.9591 0.95914482 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 41.355 39.594 3 1.4078E-07 18469 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 109.42 99.498 394850000 39498000 44219000 30773000 0 0 0 34037000 33178000 30126000 1355300 0 0 27401000 26119000 26289000 0 0 0 33895000 34909000 33053000 0 0 0 20769 1192 20120 385319;385320;385321;385322;385323;385324;385325;385326;385327;385328;385329;385330;385331 236094;236095;236096;236097;236098;236099;236100;236101;236102;236103;236104 236103 10 VAADFLAK Unmodified 833.4647 0.46470391 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.342 23.374 2 0.013351 10757 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 73.616 24.21 4863500000 477120000 449360000 428930000 1306200 1520200 1282200 475430000 427250000 414490000 0 1053900 968280 309180000 316340000 286510000 0 0 0 437340000 456810000 378590000 0 0 0 20770 31 20121 385332;385333;385334;385335;385336;385337;385338;385339;385340;385341;385342;385343;385344;385345;385346;385347;385348 236105;236106;236107;236108;236109;236110;236111;236112 236105 8 VAAEMATGAIER Unmodified 1217.6074 0.60742176 1362 P31131 ydeJ Protein YdeJ yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 20.674 21.167 2 2.103E-05 8384 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 121.83 109.98 83256000 30021000 23280000 26015000 0 0 0 0 0 0 0 0 0 0 2617300 1322500 0 0 0 0 0 0 0 0 0 20771 1362 20122 385349;385350;385351;385352;385353 236113 236113 1 VAAFGFR Unmodified 766.41261 0.41260876 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.793 25.645 2 0.00025707 11571 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 161.52 121.15 200760000 24716000 22560000 19280000 0 0 0 18525000 20096000 20420000 0 0 0 10565000 10778000 10409000 0 0 0 13746000 14686000 14979000 0 0 0 20772 88 20123 385354;385355;385356;385357;385358;385359;385360;385361;385362;385363;385364;385365 236114;236115;236116 236115 2 VAAGAIAK Unmodified 699.42792 0.42792448 1075 P12008 aroC Chorismate synthase yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 11.315 12.103 2 0.1256 3279 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 52.683 16.096 72520000 47094000 9579200 11860000 0 0 0 0 0 0 0 0 0 0 3986500 0 0 0 0 0 0 0 0 0 0 20773 1075 20124 385366;385367;385368;385369 236117 236117 0 VAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLR Unmodified 3672.9053 0.90526534 330 P0A7C2 lexA LexA repressor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.569 46.035 5 0.00016202 22527 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 64.914 64.488 442850000 51009000 44808000 46205000 10321000 9944600 7574900 21224000 26001000 20999000 12011000 10626000 14294000 23008000 22027000 8390800 0 0 0 25391000 36382000 31571000 5679600 10118000 5264200 20774 330 20125 385370;385371;385372;385373;385374;385375;385376;385377;385378;385379;385380;385381;385382;385383;385384;385385;385386;385387;385388;385389;385390 236118;236119;236120;236121;236122;236123;236124;236125;236126 236124 9 VAAHVWSADEK Unmodified 1211.5935 0.59348625 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 1 1 1 1 13.567 14.421 2;3 2.8618E-07 4539 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 159.79 123.1 582980000 151460000 44746000 48231000 0 0 0 23929000 30653000 164650000 0 0 0 18670000 20328000 14674000 0 0 0 21263000 23811000 20567000 0 0 0 20775 507 20126 385391;385392;385393;385394;385395;385396;385397;385398;385399;385400;385401;385402;385403;385404;385405;385406 236127;236128;236129;236130;236131;236132;236133;236134;236135;236136;236137;236138;236139;236140;236141 236128 15 VAALAEAR Unmodified 799.4552 0.45520186 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 3 2 3 1 1 1 1 1 1 1 1 1 2 1 1 1 15.628 16.026 2 0.0003704 4254 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143 47.047 3439000000 0 161840000 160880000 24709000 21903000 23483000 386610000 323200000 302250000 14199000 12245000 11159000 310730000 287540000 265110000 0 0 4879900 369510000 369230000 355040000 13195000 10429000 10886000 20776 107 20127 385407;385408;385409;385410;385411;385412;385413;385414;385415;385416;385417;385418;385419;385420;385421;385422;385423;385424;385425;385426;385427;385428;385429;385430;385431;385432;385433;385434 236142;236143;236144;236145;236146;236147;236148;236149;236150;236151;236152;236153;236154;236155;236156;236157;236158;236159 236150 18 VAALEGDVLGSYQHGAR Unmodified 1741.8747 0.87474649 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 4 2 2 2 4 4 5 2 2 2 5 4 4 2 1 1 5 6 3 2 2 2 28.731 27.43 2;3 1.5805E-61 12066 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 294.4 290.23 48846000000 3549300000 3394200000 2934300000 27004000 28663000 34146000 3989500000 4268300000 3931000000 68136000 53529000 49456000 3642800000 3878000000 3382600000 23619000 17715000 17535000 5202700000 5438900000 4825300000 30323000 31554000 27242000 20777 267 20128 385435;385436;385437;385438;385439;385440;385441;385442;385443;385444;385445;385446;385447;385448;385449;385450;385451;385452;385453;385454;385455;385456;385457;385458;385459;385460;385461;385462;385463;385464;385465;385466;385467;385468;385469;385470;385471;385472;385473;385474;385475;385476;385477;385478;385479;385480;385481;385482;385483;385484;385485;385486;385487;385488;385489;385490;385491;385492;385493;385494;385495;385496;385497;385498;385499;385500;385501;385502;385503;385504;385505;385506;385507;385508;385509;385510 236160;236161;236162;236163;236164;236165;236166;236167;236168;236169;236170;236171;236172;236173;236174;236175;236176;236177;236178;236179;236180;236181;236182;236183;236184;236185;236186;236187;236188;236189;236190;236191;236192;236193;236194;236195;236196;236197;236198;236199;236200;236201;236202;236203;236204;236205;236206;236207;236208;236209;236210;236211;236212;236213;236214;236215;236216;236217;236218;236219;236220;236221;236222;236223;236224;236225;236226;236227;236228;236229;236230;236231;236232;236233;236234;236235 236228 73 VAALLCHDTFTHPQPTAPEVQKPTLH Unmodified 2907.4701 0.470147 418 P0A8C4 ygfB UPF0149 protein YgfB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 2 2 3 3 4 2 2 2 3 4 3 2 2 2 3 3 3 2 2 2 28.314 27.041 3;4;5 3.0013E-22 11943 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 163.78 163.21 6255500000 553980000 406620000 390290000 12798000 12953000 15575000 503300000 643730000 569400000 63918000 40919000 55279000 384880000 453680000 491160000 17677000 15909000 20245000 545490000 567930000 445160000 16082000 17299000 11222000 20778 418 20129 385511;385512;385513;385514;385515;385516;385517;385518;385519;385520;385521;385522;385523;385524;385525;385526;385527;385528;385529;385530;385531;385532;385533;385534;385535;385536;385537;385538;385539;385540;385541;385542;385543;385544;385545;385546;385547;385548;385549;385550;385551;385552;385553;385554;385555;385556;385557;385558;385559;385560;385561;385562;385563;385564;385565;385566;385567;385568;385569;385570;385571;385572 236236;236237;236238;236239;236240;236241;236242;236243;236244;236245;236246;236247;236248;236249;236250;236251;236252;236253;236254;236255;236256;236257;236258;236259;236260;236261;236262;236263;236264;236265;236266;236267;236268;236269;236270 236266 35 VAALNGLNR Unmodified 926.52976 0.52976379 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.569 18.982 2 4.6109E-05 6982 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.02 136.44 205110000 24595000 28376000 25093000 4107900 4026900 3414100 6387700 6516000 8268600 3188800 3075500 2698200 7238500 5833200 5705100 0 0 0 18996000 22861000 17760000 2269200 3238800 1456800 20779 1302 20130 385573;385574;385575;385576;385577;385578;385579;385580;385581;385582;385583;385584;385585;385586;385587;385588;385589;385590;385591;385592;385593 236271;236272;236273;236274;236275;236276;236277 236277 6 VAAMQEEDVER Unmodified 1275.5765 0.57651556 108 P05100 tag DNA-3-methyladenine glycosylase 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.614 16.244 2 1.9753E-05 5580 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 136.63 121.97 90489000 0 0 0 0 0 0 7242900 9180900 7471300 0 0 0 9441900 8935100 8336400 2333500 2500200 2636100 11571000 9327500 11512000 0 0 0 20780 108 20131 385594;385595;385596;385597;385598;385599;385600;385601;385602;385603;385604;385605 236278;236279;236280 236280 3 VAAPESLAVLFNPAR Unmodified 1553.8566 0.85657723 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 3 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 50.983 49.777 2;3 5.3562E-21 19782 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 223.78 218.89 2928700000 151370000 127490000 138550000 7768500 8558100 7592100 192080000 198230000 177550000 11346000 12450000 13004000 177440000 217560000 191070000 15648000 12943000 11999000 378790000 375810000 329230000 59339000 56125000 56755000 20781 1819 20132 385606;385607;385608;385609;385610;385611;385612;385613;385614;385615;385616;385617;385618;385619;385620;385621;385622;385623;385624;385625;385626;385627;385628;385629;385630;385631;385632;385633;385634;385635;385636;385637;385638;385639;385640;385641;385642;385643;385644;385645;385646;385647;385648 236281;236282;236283;236284;236285;236286;236287;236288;236289;236290;236291;236292;236293;236294;236295;236296;236297;236298;236299;236300;236301;236302;236303;236304;236305;236306;236307;236308;236309;236310;236311;236312;236313;236314;236315;236316 236291 34 VAAQLYWQGEVIPGEISFR Unmodified 2162.116 0.1160394 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 53.079 51.659 2;3 3.1899E-37 25278 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 243.88 228.85 339470000 24257000 21898000 22024000 0 1228800 2830500 39906000 41177000 35983000 0 0 3524100 29982000 26351000 20681000 0 0 0 28468000 20821000 20336000 0 0 0 20782 902 20133 385649;385650;385651;385652;385653;385654;385655;385656;385657;385658;385659;385660;385661;385662;385663;385664;385665;385666;385667;385668;385669;385670;385671;385672;385673;385674;385675;385676;385677 236317;236318;236319;236320;236321;236322;236323;236324;236325;236326;236327;236328;236329;236330 236321 13 VAASGGYMMACVADK Unmodified 1529.6677 0.66765553 977 P0AG14 sohB Probable protease SohB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.436 27.003 2 1.1967E-06 10388 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 116.01 113.74 90090000 2687500 3426700 3286600 1545500 1228500 1406200 6521100 0 6315700 7081200 7402800 5305100 6419800 6588200 6288600 0 0 0 6303500 5764000 7545000 0 2366400 2608200 20783 977 20134 385678;385679;385680;385681;385682;385683;385684;385685;385686;385687;385688;385689;385690;385691;385692;385693;385694;385695;385696 236331;236332;236333;236334;236335;236336 236331 5 VAASQGVELGAGIEIVDPEVVR Unmodified 2207.1798 0.17976186 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.568 49.132 2 9.8613E-22 23163 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 216.39 200.85 83197000 4470500 4280500 0 0 0 0 9399000 9495300 7451700 1580700 0 0 9183100 7017600 7907900 0 0 0 7790200 8089700 6531200 0 0 0 20784 539 20135 385697;385698;385699;385700;385701;385702;385703;385704;385705;385706;385707;385708 236337;236338;236339;236340 236340 4 VAATILFLQQR Unmodified 1258.7398 0.73975656 1380 P31802 narP Nitrate/nitrite response regulator protein NarP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.595 40.987 2 2.5309E-26 20101 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 251.17 237.4 388830000 28972000 26079000 21238000 3735000 3107800 3638300 34203000 28573000 29422000 15083000 15086000 11561000 30009000 23877000 25499000 4683500 3078500 3179600 24285000 24671000 22790000 3070900 2987400 0 20785 1380 20136 385709;385710;385711;385712;385713;385714;385715;385716;385717;385718;385719;385720;385721;385722;385723;385724;385725;385726;385727;385728;385729;385730;385731 236341;236342;236343;236344;236345;236346;236347;236348;236349;236350;236351;236352;236353;236354;236355;236356;236357 236352 17 VAAVVNNGVVLESDVDGLMQSVK Unmodified 2342.2152 0.21516109 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.618 51.359 3 6.4047E-22 25011 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.06 165.25 295830000 28058000 26839000 22669000 0 0 0 22573000 19587000 19770000 0 0 0 22517000 20739000 20851000 0 0 0 36153000 30310000 25763000 0 0 0 20786 688 20137 385732;385733;385734;385735;385736;385737;385738;385739;385740;385741;385742;385743 236358;236359;236360;236361;236362;236363;236364;236365;236366;236367;236368 236361 11 VACETYVK Unmodified 968.46372 0.46371763 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.72 13.431 2 0.00033509 3710 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 145.04 93.357 3641300000 241330000 222100000 231530000 11560000 9507400 10289000 502360000 532660000 466380000 44548000 570840 0 238750000 199040000 194330000 3837800 0 1037700 258570000 249190000 223700000 0 0 0 20787 388 20138 385744;385745;385746;385747;385748;385749;385750;385751;385752;385753;385754;385755;385756;385757;385758;385759;385760;385761;385762 236369;236370;236371;236372;236373;236374;236375;236376;236377;236378;236379;236380;236381;236382;236383 236382 15 VADAMLAQGVI Unmodified 1086.5743 0.57433072 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.891 46.476 2 0.0021696 22527 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.26 65.32 292420000 72896000 76964000 66571000 0 0 0 10512000 9884400 8997900 0 0 0 4806100 4767700 4798200 0 0 0 10547000 10937000 10737000 0 0 0 20788 26 20139 385763;385764;385765;385766;385767;385768;385769;385770;385771;385772;385773;385774 236384;236385;236386;236387;236388;236389;236390;236391;236392 236391 9 VADDAPLMER Unmodified 1115.5281 0.5281088 1654 P63020 nfuA Fe/S biogenesis protein NfuA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.681 21.59 2 0.00016229 9119 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.74 123.09 2080400000 216740000 191800000 164130000 4648200 4685900 6320400 133590000 169040000 150670000 7543900 4753600 4489000 142210000 155420000 131350000 3066800 1871000 2258900 189710000 192650000 188030000 7026300 0 8359100 20789 1654 20140 385775;385776;385777;385778;385779;385780;385781;385782;385783;385784;385785;385786;385787;385788;385789;385790;385791;385792;385793;385794;385795;385796;385797;385798 236393;236394;236395;236396;236397;236398;236399;236400 236394 8 VADDQGFLR Unmodified 1019.5036 0.50360861 870 P0AEL6 fepB Ferrienterobactin-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 22.991 22.369 2 0.020445 9853 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 64.734 37.87 95007000 12324000 14017000 0 1371100 0 0 0 7096300 7527200 0 0 0 9395300 7780900 7278100 0 0 0 14215000 0 14002000 0 0 0 20790 870 20141 385799;385800;385801;385802;385803;385804;385805;385806;385807;385808 236401;236402;236403;236404 236401 0 VADELAVITCAPFVTAPNKFEALATCDALVQAHGALK Unmodified 3910.9961 0.99613054 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 53.378 51.954 4 7.2771E-18 25695 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.89 127.57 91994000 20338000 24449000 23589000 0 0 0 0 6363100 0 0 0 0 0 0 2926400 0 0 0 7077000 0 7252400 0 0 0 20791 106 20142 385809;385810;385811;385812;385813;385814;385815 236405 236405 1 VADFFMDFLGASEGLNAK Unmodified 1930.9135 0.91349976 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 1 2 2 2 2 1 2 2 2 2 2 55.479 54.021 2;3 1.5968E-23 21738 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 251.3 247.56 786610000 35726000 38418000 37512000 0 0 0 21391000 34484000 20468000 3455300 2957700 3953100 43670000 53358000 42132000 0 0 0 32429000 48166000 51971000 102560000 105890000 108070000 20792 1433 20143 385816;385817;385818;385819;385820;385821;385822;385823;385824;385825;385826;385827;385828;385829;385830;385831;385832;385833;385834;385835;385836;385837;385838;385839;385840;385841;385842;385843;385844;385845;385846 236406;236407;236408;236409;236410;236411 236410 6 VADGATVVSTSTR Unmodified 1262.6466 0.64664404 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.059 15.851 2 4.1421E-18 5445 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 222.74 207.59 7003000000 760780000 849550000 801870000 7849800 8147300 8047800 442340000 432920000 421110000 0 0 0 389560000 366190000 363860000 0 0 2188300 739800000 713930000 694910000 0 0 0 20793 1444 20144 385847;385848;385849;385850;385851;385852;385853;385854;385855;385856;385857;385858;385859;385860;385861;385862 236412;236413;236414;236415;236416;236417;236418;236419;236420;236421;236422;236423 236412 12 VADGEEALQLANDTEYGLTASVWTQNLSQALEYSDR Unmodified 3956.8552 0.85519943 1948 P80668 feaB Phenylacetaldehyde dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 54.238 52.92 4 0.16369 19468 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 1.3393 0.031107 9962900000 0 0 0 3545200000 3125300000 3292400000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20794 1948 20145 385863;385864;385865 236424 236424 1 VADILESNAR Unmodified 1086.5669 0.56693715 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.769 21.634 2 3.1496E-07 8439 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 202.28 145.1 637110000 0 0 149480000 2205300 2758300 2811100 29054000 32382000 30116000 1352300 1177400 906810 45482000 40522000 36323000 395470 0 0 84510000 83922000 91244000 0 1042500 1428600 20795 34 20146 385866;385867;385868;385869;385870;385871;385872;385873;385874;385875;385876;385877;385878;385879;385880;385881;385882;385883;385884;385885;385886 236425;236426;236427;236428;236429;236430;236431;236432;236433;236434;236435;236436;236437 236436 10 VADISLLQ Unmodified 857.48583 0.48583328 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 43.845 42.103 1;2 0.0041523 20809 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.734 81.504 1494200000 126120000 109500000 106150000 0 0 0 144490000 131290000 134510000 10524000 9675900 9276800 105640000 83765000 72809000 0 0 0 152370000 153590000 137840000 4380900 0 2294300 20796 62 20147 385887;385888;385889;385890;385891;385892;385893;385894;385895;385896;385897;385898;385899;385900;385901;385902;385903;385904;385905;385906;385907;385908;385909;385910;385911;385912;385913;385914;385915;385916;385917;385918;385919 236438;236439;236440;236441;236442;236443;236444;236445;236446;236447;236448;236449;236450;236451;236452;236453 236441 15 VADITLDPK Unmodified 970.53351 0.53351176 1695 P64604 mlaD Probable phospholipid ABC transporter-binding protein MlaD yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 23.958 23.134 2 0.024368 7477 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 61.679 51.541 25603000 0 0 0 2999000 2020300 2198700 0 0 0 0 0 0 3495200 3016300 3262600 0 0 0 0 3188200 5422100 0 0 0 20797 1695 20148 385920;385921;385922;385923;385924;385925;385926;385927 236454;236455 236454 2 VADLDPSFHDLTEADFQETFNVGSFASGK Unmodified 3143.436 0.43598914 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.766 52.35 3 1.3645E-16 25476 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.31 151.08 1113400000 96884000 74861000 74779000 5728900 6329500 0 51612000 43292000 38202000 0 0 0 94492000 77299000 65451000 0 0 0 149040000 151720000 143620000 13513000 12824000 13779000 20798 937 20149 385928;385929;385930;385931;385932;385933;385934;385935;385936;385937;385938;385939;385940;385941;385942;385943;385944 236456;236457;236458;236459;236460;236461;236462;236463;236464;236465;236466;236467;236468;236469 236463 14 VADLEVK Unmodified 772.43307 0.43306943 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.957 33.239 2 0.02764 15278 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 69.432 7.435 816700000 109580000 118930000 0 1580500 1739100 1527700 75300000 76455000 79745000 1498800 1340600 0 0 52194000 44606000 0 0 0 82876000 86619000 76838000 2543400 1551000 1778300 20799 558 20150 385945;385946;385947;385948;385949;385950;385951;385952;385953;385954;385955;385956;385957;385958;385959;385960;385961;385962 236470;236471;236472;236473;236474 236474 5 VADLEVKYGEMDGYSAEAR Unmodified 2101.9626 0.9626348 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 35.321 33.642 3 0.16979 16376 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 12.848 12.848 1423000000 0 709200000 0 0 0 0 707180000 3288800 0 0 0 0 0 0 0 0 0 0 3303100 0 0 0 0 0 20800 558 20151 385963;385964;385965;385966 236475;236476 236475 2 VADLFEAR Unmodified 919.47633 0.47633123 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 2 2 1 1 6 8 9 1 1 1 2 3 4 29.13 28.342 2 3.7226E-05 9600 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 173.59 153.24 43622000000 388030000 348200000 330500000 25152000 23202000 23961000 0 0 326710000 2979900000 2938100000 2775900000 236170000 238110000 242900000 7869500000 6062800000 7098800000 466450000 455640000 411690000 3533800000 3419000000 3427100000 20801 458 20152 385967;385968;385969;385970;385971;385972;385973;385974;385975;385976;385977;385978;385979;385980;385981;385982;385983;385984;385985;385986;385987;385988;385989;385990;385991;385992;385993;385994;385995;385996;385997;385998;385999;386000;386001;386002;386003;386004;386005;386006;386007;386008;386009;386010;386011;386012;386013;386014;386015;386016;386017 236477;236478;236479;236480;236481;236482;236483;236484;236485;236486;236487;236488;236489;236490;236491;236492;236493;236494;236495;236496;236497;236498;236499;236500;236501;236502;236503;236504;236505;236506;236507;236508;236509;236510;236511;236512;236513;236514;236515;236516;236517;236518;236519;236520;236521;236522;236523;236524;236525;236526;236527;236528;236529;236530;236531;236532 236516 52 VADLLSK Unmodified 744.43815 0.43815481 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 18.597 19.055 2 0.021003 7285 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 76.134 50.516 126640000 12341000 9269700 10396000 1915600 1434300 1485300 1963000 9151600 9846300 5627900 4125200 3311000 6343400 6904600 5172700 0 0 0 13483000 9693700 10842000 0 1749700 1585400 20802 78 20153 386018;386019;386020;386021;386022;386023;386024;386025;386026;386027;386028;386029;386030;386031;386032;386033;386034;386035;386036;386037;386038;386039 236533;236534;236535 236534 3 VADMVANFAHEIDTYGHIPNGNR Unmodified 2540.1867 0.18665493 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 44.891 43.312 4 2.1285E-07 21046 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.755 81.643 83627000 22820000 19048000 14931000 0 0 0 7707300 6541400 6183500 0 0 0 0 0 0 0 0 0 0 3379200 3016100 0 0 0 20803 1091 20154 386040;386041;386042;386043;386044;386045;386046;386047 236536;236537 236537 2 VADNADNDALLR Unmodified 1285.6262 0.62624295 200 P09126 hemD Uroporphyrinogen-III synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 21.416 21.608 2 3.8666E-06 8807 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 134.59 114.81 55910000 14080000 13326000 13489000 0 0 0 2930000 6438100 5646500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20804 200 20155 386048;386049;386050;386051;386052;386053 236538;236539 236539 2 VADVINNDPLVGDK Unmodified 1467.7569 0.75692277 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.209 30.847 2 9.6544E-11 11646 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 160.15 138.16 1782500000 69129000 64658000 63203000 0 0 0 189480000 165700000 164360000 61238000 54556000 53115000 116790000 102340000 107690000 16603000 11564000 12173000 155220000 169230000 157060000 16171000 17052000 15163000 20805 30 20156 386054;386055;386056;386057;386058;386059;386060;386061;386062;386063;386064;386065;386066;386067;386068;386069;386070;386071;386072;386073;386074 236540;236541;236542;236543;236544;236545;236546;236547;236548;236549;236550;236551;236552;236553;236554;236555;236556;236557;236558;236559 236545 20 VADVINNDPLVGDKLK Unmodified 1708.9359 0.93594977 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 1 1 1 2 31.366 29.84 2;3 3.6248E-10 11737 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 151.26 149.12 274700000 0 0 0 0 0 1833300 0 0 0 49389000 45320000 43992000 0 0 0 32210000 29627000 26013000 0 0 0 14328000 14200000 17790000 20806 30 20157 386075;386076;386077;386078;386079;386080;386081;386082;386083;386084;386085;386086;386087;386088;386089 236560;236561;236562;236563;236564;236565;236566;236567;236568;236569;236570;236571 236564 12 VADWQIAAILNIGQR Unmodified 1666.9155 0.91548909 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 54.555 53.331 2;3 7.4001E-16 21595 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 247.96 232.33 178100000 0 0 0 15164000 14694000 16252000 81887 0 0 25780000 25289000 18598000 0 0 0 3440600 3268300 3793800 0 0 0 18265000 17207000 16262000 20807 1427 20158 386090;386091;386092;386093;386094;386095;386096;386097;386098;386099;386100;386101;386102;386103;386104;386105;386106;386107;386108;386109;386110;386111 236572;236573;236574;236575;236576;236577;236578;236579;236580;236581;236582;236583;236584;236585;236586;236587 236573 16 VAEAEMATMEK Unmodified 1208.5417 0.54170996 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.302 18.917 2 1.4383E-05 6667 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 142.43 142.43 1971100000 169370000 142850000 124800000 0 0 0 172390000 184380000 146310000 0 0 0 158650000 164440000 131610000 0 0 0 191170000 187220000 197940000 0 0 0 20808 170 20159 386112;386113;386114;386115;386116;386117;386118;386119;386120;386121;386122;386123 236588;236589;236590;236591;236592;236593;236594;236595;236596;236597;236598;236599 236599 7 VAEAIAASFGSFADFK Unmodified 1629.8039 0.80387296 1008 P0AGD3 sodB Superoxide dismutase [Fe] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.25 50.002 2;3 1.5659E-09 24701 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.2 152.1 1421500000 134410000 116880000 103030000 0 0 0 168460000 137970000 139710000 0 0 0 93252000 87066000 76987000 0 0 0 135840000 116810000 111070000 0 0 0 20809 1008 20160 386124;386125;386126;386127;386128;386129;386130;386131;386132;386133;386134;386135;386136;386137;386138;386139;386140;386141;386142;386143;386144;386145;386146;386147 236600;236601;236602;236603;236604;236605;236606;236607;236608;236609;236610;236611;236612;236613;236614;236615;236616;236617;236618;236619;236620;236621;236622;236623;236624;236625;236626;236627;236628;236629;236630;236631;236632;236633;236634;236635 236611 36 VAEALRDDLLAAK Unmodified 1383.7722 0.7721789 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 29.016 27.556 2;3 9.4497E-10 13038 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 186.36 160.32 2386300000 298000000 221710000 227550000 2139900 2856300 2861400 171080000 176400000 182890000 4523900 3744300 4596100 140770000 150120000 143460000 0 1197700 0 214870000 207610000 214740000 5460800 4360700 5406100 20810 1503 20161 386148;386149;386150;386151;386152;386153;386154;386155;386156;386157;386158;386159;386160;386161;386162;386163;386164;386165;386166;386167;386168;386169;386170;386171;386172;386173;386174;386175;386176;386177;386178;386179;386180;386181;386182;386183;386184;386185;386186;386187;386188;386189;386190 236636;236637;236638;236639;236640;236641;236642;236643;236644;236645;236646;236647;236648;236649;236650;236651;236652;236653;236654;236655;236656 236637 21 VAEAPEK Unmodified 742.38612 0.38611924 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 5.1021 6.1894 2 0.021102 1015 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 76.035 61.37 19193000 0 0 0 5956900 7168600 6067600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20811 1899 20162 386191;386192;386193 236657;236658;236659 236658 3 VAEEAGVYK Unmodified 964.48656 0.48656157 694 P0AC23 focA Probable formate transporter 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 12.909 13.531 2 0.0063099 3822 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 71.379 55.881 118780000 0 0 0 1129000 0 0 19061000 24065000 17337000 7252600 11124000 12067000 0 12444000 0 0 0 0 0 14298000 0 0 0 0 20812 694 20163 386194;386195;386196;386197;386198;386199;386200;386201;386202 236660 236660 1 VAEEIEDIVGIDATDAVR Unmodified 1913.9582 0.95820135 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 49.296 48.062 2;3 3.1211E-23 17943 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 201.6 189.67 530000000 30138000 32018000 22952000 3610900 3753400 1772100 20277000 24165000 16685000 12711000 11550000 11512000 24293000 23866000 25974000 32585000 25883000 27122000 30673000 37468000 24572000 23185000 34728000 28502000 20813 1633 20164 386203;386204;386205;386206;386207;386208;386209;386210;386211;386212;386213;386214;386215;386216;386217;386218;386219;386220;386221;386222;386223;386224;386225;386226;386227;386228;386229;386230;386231;386232;386233;386234;386235;386236;386237;386238;386239;386240;386241;386242;386243;386244;386245;386246;386247;386248;386249 236661;236662;236663;236664;236665;236666;236667;236668;236669;236670;236671;236672;236673;236674;236675;236676;236677;236678;236679;236680;236681;236682;236683;236684 236665 24 VAEETPHLIHK Unmodified 1272.6826 0.68263561 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 1 12.435 13.218 2;3 1.3191E-07 3722 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 189.38 178.57 10117000000 1341100000 1096600000 1343900000 5623800 3973400 4702000 437130000 444350000 419850000 3377500 0 0 564200000 509770000 496760000 0 0 0 1216200000 1133600000 1081100000 2759600 7552800 4830500 20814 392 20165 386250;386251;386252;386253;386254;386255;386256;386257;386258;386259;386260;386261;386262;386263;386264;386265;386266;386267;386268;386269;386270;386271;386272;386273;386274;386275;386276;386277;386278;386279;386280;386281;386282;386283 236685;236686;236687;236688;236689;236690;236691;236692;236693;236694;236695;236696;236697;236698;236699;236700;236701;236702;236703;236704;236705;236706;236707;236708 236689 24 VAEEVAELLLAR Unmodified 1311.7398 0.73981614 692 P0AC16 folB Dihydroneopterin aldolase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 49.468 48.09 2 0.00093406 22462 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.692 61.43 35431000 2479900 2384100 0 0 0 0 0 3227000 3123700 1309900 0 2099500 3143800 3554300 4908300 0 0 0 0 5097300 4103600 0 0 0 20815 692 20166 386284;386285;386286;386287;386288;386289;386290;386291;386292;386293;386294 236709;236710 236710 1 VAEFFGK Unmodified 796.41194 0.41194006 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 2 2 1 1 2 2 2 2 1 1 1 2 2 2 2 1 1 24.24 23.316 1;2 0.021819 8585 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 75.311 69.773 6881900000 827780000 71987000 73072000 16621000 15811000 17300000 101950000 960070000 886280000 105950000 95572000 110760000 439200000 393730000 391000000 6191300 3437300 4510400 758310000 718920000 782860000 33952000 30825000 35783000 20816 293 20167 386295;386296;386297;386298;386299;386300;386301;386302;386303;386304;386305;386306;386307;386308;386309;386310;386311;386312;386313;386314;386315;386316;386317;386318;386319;386320;386321;386322;386323;386324;386325;386326;386327;386328;386329;386330;386331;386332 236711;236712;236713;236714;236715;236716;236717;236718;236719;236720;236721;236722;236723;236724;236725;236726;236727;236728;236729;236730;236731;236732;236733;236734;236735 236714 25 VAEFFGKEPR Unmodified 1178.6084 0.60840804 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 1 2 2 2 1 1 1 2 2 2 19.614 19.762 2;3 0.00040832 6358 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.2 64.551 941110000 2004900 0 0 64794000 64795000 61899000 4841400 0 0 203680000 170380000 172740000 0 0 0 10390000 9928300 11679000 0 0 0 58850000 51251000 53891000 20817 293 20168 386333;386334;386335;386336;386337;386338;386339;386340;386341;386342;386343;386344;386345;386346;386347;386348;386349;386350;386351;386352;386353;386354;386355;386356 236736;236737;236738;236739;236740;236741;236742;236743;236744;236745;236746;236747;236748;236749;236750;236751;236752;236753;236754;236755;236756 236739 16 VAEHAEICGR Unmodified 1140.5346 0.53459117 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 11.202 12.033 2;3 1.794E-12 3114 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 215.88 209.43 3773500000 388190000 354010000 381990000 0 0 0 359070000 348970000 347270000 0 0 0 290860000 235970000 285200000 0 0 0 390940000 391060000 0 0 0 0 20818 58 20169 386357;386358;386359;386360;386361;386362;386363;386364;386365;386366;386367;386368;386369;386370;386371;386372;386373;386374;386375;386376;386377;386378;386379;386380 236757;236758;236759;236760;236761;236762;236763;236764;236765;236766;236767;236768;236769;236770;236771;236772;236773 236767 17 VAEIPELHAVSEFIHFACTSEDINNLSHALMLK Unmodified 3734.8437 0.84365264 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 1 2 2 2 2 2 2 54.761 53.34 4;5 1.0038E-14 26220 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 133.95 132.33 1922100000 250340000 257320000 229560000 1342600 0 1435800 90169000 66371000 19307000 0 0 0 161290000 144250000 150420000 0 0 0 162700000 181400000 206170000 0 0 0 20819 638 20170 386381;386382;386383;386384;386385;386386;386387;386388;386389;386390;386391;386392;386393;386394;386395;386396;386397;386398;386399;386400;386401;386402;386403;386404 236774;236775;236776;236777;236778;236779;236780;236781;236782;236783;236784;236785 236783 12 VAELASEAGIPDGVFNVVTGSGAVCGAALTSHPHVAK Unmodified 3587.8042 0.80423067 1948 P80668 feaB Phenylacetaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By matching 1 1 46.824 45.569 4 2.4818E-08 22346 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.111 85.62 28574000 15889000 0 12685000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20820 1948 20171 386405;386406 236786 236786 1 VAELNPDR Unmodified 912.46649 0.46649483 1387 P32131 hemN Oxygen-independent coproporphyrinogen-III oxidase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.159 14.038 2 0.0066875 4060 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 84.568 45.776 199570000 29793000 25050000 26778000 806780 0 0 19946000 18278000 19071000 0 0 0 15575000 14187000 3506200 0 0 0 0 13930000 12648000 0 0 0 20821 1387 20172 386407;386408;386409;386410;386411;386412;386413;386414;386415;386416;386417;386418 236787 236787 1 VAENGYIAIALNDTTEVVIKR Unmodified 2288.2376 0.23761109 824 P0ADZ7 yajC UPF0092 membrane protein YajC yes yes 0 0 1 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 49.144 47.639 3 2.7839E-16 18995 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 156.08 153.57 108190000 0 0 0 6259800 8914500 9811900 0 0 0 18410000 19905000 18837000 0 0 0 0 0 0 0 0 0 7817800 9802400 8428200 20822 824 20173 386419;386420;386421;386422;386423;386424;386425;386426;386427 236788;236789;236790;236791;236792;236793;236794 236790 6 VAEPGEVLAAGGR Unmodified 1224.6463 0.64625011 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.419 23.318 2 3.1954E-07 10489 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.61 143.72 194950000 0 0 0 0 0 2514100 29377000 24595000 21016000 15817000 13346000 12405000 12362000 11991000 11283000 0 0 0 11182000 10045000 9908600 3085000 2743700 3283100 20823 1476 20174 386428;386429;386430;386431;386432;386433;386434;386435;386436;386437;386438;386439;386440;386441;386442;386443 236795;236796;236797;236798;236799;236800;236801;236802;236803;236804;236805 236796 5 VAESLNATLVDMR Unmodified 1417.7235 0.72351415 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.222 34.69 2 1.0252E-17 13633 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 218.18 187.62 69996000 0 0 0 4617300 4498800 4186400 0 0 0 9513100 11327000 9591600 0 0 0 3180600 2275500 2112000 0 0 0 6005700 5775900 6912400 20824 1909 20175 386444;386445;386446;386447;386448;386449;386450;386451;386452;386453;386454;386455 236806;236807;236808;236809;236810 236807 5 VAESVIPEIK Unmodified 1083.6176 0.61757574 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.903 29.448 2 0.00038703 13677 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.16 108.96 741640000 138080000 140650000 130810000 2669500 2125400 1891500 52875000 42220000 47437000 2458700 4927100 3323500 23777000 23156000 19083000 0 1380800 1277400 29362000 29595000 34018000 2897900 3969000 3652900 20825 553 20176 386456;386457;386458;386459;386460;386461;386462;386463;386464;386465;386466;386467;386468;386469;386470;386471;386472;386473;386474;386475;386476;386477;386478 236811;236812;236813;236814;236815;236816;236817;236818;236819;236820;236821;236822;236823;236824;236825;236826;236827;236828;236829;236830;236831 236822 21 VAETPESVIAR Unmodified 1170.6245 0.62445203 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.646 22.089 2 1.5207E-07 9347 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.44 155.86 1460800000 123880000 101720000 107110000 9476000 10605000 9729600 87160000 89009000 93578000 0 13326000 10446000 94098000 93166000 90666000 19658000 0 8675300 160020000 147350000 157930000 10779000 9354900 13106000 20826 862 20177 386479;386480;386481;386482;386483;386484;386485;386486;386487;386488;386489;386490;386491;386492;386493;386494;386495;386496;386497;386498;386499;386500 236832;236833;236834;236835;236836;236837;236838;236839;236840;236841;236842;236843;236844;236845;236846;236847;236848;236849;236850;236851;236852 236849 20 VAEVFPDMIQR Unmodified 1303.6595 0.65945733 1847 P76290 cmoA tRNA (cmo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS 1 1 38.484 37.012 2 9.4054E-05 17142 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 120.99 97.466 55364000 0 0 0 0 0 0 0 0 0 0 0 0 0 26378000 28986000 0 0 0 0 0 0 0 0 0 20827 1847 20178 386501;386502 236853;236854 236854 2 VAEVGITGLNADFLR Unmodified 1573.8464 0.84640648 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 2 2 1 1 1 48.57 47.334 2;3 3.8927E-20 22887 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 210.91 205.07 1468100000 308200000 298280000 271650000 2249400 3100300 2147100 6035000 6674700 3409200 0 1347100 0 38979000 36290000 37017000 4369800 2023600 0 151200000 144750000 132700000 5507200 5610600 6555900 20828 65 20179 386503;386504;386505;386506;386507;386508;386509;386510;386511;386512;386513;386514;386515;386516;386517;386518;386519;386520;386521;386522;386523;386524;386525;386526;386527;386528;386529;386530;386531;386532 236855;236856;236857;236858;236859;236860;236861;236862;236863;236864 236862 10 VAEVIDIPFCVAGGIK Unmodified 1686.9015 0.90147851 1627 P60664 hisF Imidazole glycerol phosphate synthase subunit HisF yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.721 51.414 2 2.971E-07 25569 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.86 91.9 234010000 29484000 30230000 26392000 0 0 0 18910000 15573000 16914000 0 0 0 16181000 15423000 14530000 0 0 0 16819000 19291000 14265000 0 0 0 20829 1627 20180 386533;386534;386535;386536;386537;386538;386539;386540;386541;386542;386543;386544 236865;236866;236867;236868;236869 236865 5 VAEWLAEHPQVAR Unmodified 1504.7787 0.77866126 130 P06721 metC Cystathionine beta-lyase MetC yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.722 24.65 2 1.0587E-05 11047 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 136.96 125.09 81666000 7481500 9901400 10665000 0 0 0 8384400 8048500 8092900 0 0 0 5428000 3885400 3509100 0 0 0 6572400 4349700 5346900 0 0 0 20830 130 20181 386545;386546;386547;386548;386549;386550;386551;386552;386553;386554;386555;386556 236870;236871;236872;236873 236872 4 VAEYGVDCLR Unmodified 1180.5547 0.55465791 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.232 24.184 2 9.0569E-05 8470 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 107.57 82.015 1231800000 112930000 101860000 93137000 3045900 3373400 3648800 105390000 92729000 84006000 0 0 0 98479000 95507000 99886000 0 0 0 101010000 114560000 119510000 2734600 0 0 20831 1649 20182 386557;386558;386559;386560;386561;386562;386563;386564;386565;386566;386567;386568;386569;386570;386571;386572;386573 236874;236875;236876;236877;236878;236879;236880;236881;236882;236883;236884;236885;236886;236887;236888;236889 236877 12 VAFAGLK Unmodified 704.42211 0.42211082 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 1 2 2 22.538 22.001 1;2 0.050121 6854 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 71.575 36.497 1446300000 130970000 146560000 115400000 10671000 10737000 11275000 81748000 77172000 66488000 127480000 22278000 25330000 75477000 71900000 62069000 72159000 46990000 56834000 14817000 10111000 11491000 13695000 88849000 95838000 20832 144 20183 386574;386575;386576;386577;386578;386579;386580;386581;386582;386583;386584;386585;386586;386587;386588;386589;386590;386591;386592;386593;386594;386595;386596;386597;386598;386599;386600;386601;386602;386603;386604;386605;386606;386607;386608;386609;386610;386611;386612;386613;386614 236890;236891;236892;236893;236894;236895;236896;236897;236898 236892 9 VAFAGYATPATGVVPPSIAYAQSYKPWPYDPVK Unmodified 3510.7864 0.78637899 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.828 50.58 3 6.1798E-10 24544 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.396 87.538 202190000 17012000 15123000 19670000 0 0 0 17493000 18428000 19821000 0 0 0 11571000 15032000 15279000 0 0 0 20351000 18366000 14044000 0 0 0 20833 1774 20184 386615;386616;386617;386618;386619;386620;386621;386622;386623;386624;386625;386626 236899;236900;236901;236902;236903;236904 236903 6 VAFDGVVNDPMK Unmodified 1290.6278 0.62782285 1480 P37645 yhjG Uncharacterized protein YhjG yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 34.282 32.47 2 0.063758 12875 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 42.21 37.427 27237000 0 0 0 2549100 1994300 2345800 0 0 0 2926500 0 0 0 0 0 0 0 0 0 17421000 0 0 0 0 20834 1480 20185 386627;386628;386629;386630;386631 236905 236905 1 VAFENIEDAAR Unmodified 1233.599 0.59896556 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.202 28.824 2 6.4576E-08 13779 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 175.73 149.28 2374600000 138600000 133850000 120970000 5792300 5109100 4461100 229800000 227010000 221400000 35522000 35476000 31077000 190610000 176620000 200400000 12542000 9244800 8886100 177160000 197270000 196700000 6239000 5245200 4619800 20835 1196 20186 386632;386633;386634;386635;386636;386637;386638;386639;386640;386641;386642;386643;386644;386645;386646;386647;386648;386649;386650;386651;386652;386653;386654;386655 236906;236907;236908;236909;236910;236911;236912;236913;236914;236915;236916;236917;236918;236919;236920;236921;236922 236909 15 VAFFYSSPTVTDQNQWVK Unmodified 2116.0266 0.026555687 1821 P76142 lsrB Autoinducer 2-binding protein LsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 46.658 45.419 2;3 2.1673E-23 22003 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 202.05 193.74 316950000 119300000 103190000 94460000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20836 1821 20187 386656;386657;386658;386659;386660;386661 236923;236924;236925;236926;236927;236928 236927 6 VAFINTGFLDR Unmodified 1251.6612 0.66117189 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.738 43.211 2 2.9204E-14 20883 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 211.45 207.87 1568900000 323120000 299550000 255570000 564420 0 415060 91150000 85098000 79606000 0 0 0 56955000 51030000 44783000 0 0 0 98462000 92660000 89909000 0 0 0 20837 1465 20188 386662;386663;386664;386665;386666;386667;386668;386669;386670;386671;386672;386673;386674;386675 236929;236930;236931;236932;236933;236934;236935;236936;236937;236938;236939 236936 4 VAFMPWNGYNFEDSILVSER Oxidation (M) 2389.1049 0.10488236 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 6 7 5 2 2 3 53.857 53.241 2;3 3.2454E-37 19958 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 234.52 231.81 1329400000 0 0 0 0 0 0 0 2375700 0 79252000 56474000 72005000 0 0 0 364460000 263560000 226270000 0 0 0 99509000 85696000 79822000 20838 463 20189 386676;386677;386678;386679;386680;386681;386682;386683;386684;386685;386686;386687;386688;386689;386690;386691;386692;386693;386694;386695;386696;386697;386698;386699;386700;386701;386702;386703;386704;386705;386706;386707 236940;236941;236942;236943;236944;236945;236946;236947;236948;236949;236950;236951;236952;236953;236954;236955;236956;236957;236958;236959;236960;236961;236962;236963 236945 281 22 VAFMPWNGYNFEDSILVSER Unmodified 2373.11 0.10996774 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 4 2 3 1 1 1 2 2 2 1 2 2 3 2 3 55.012 53.779 2;3 1.5821E-37 21411 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 229.4 225.45 30567000000 59890000 64644000 62360000 6996600 6830700 7871100 61285000 0 44169000 1558600000 1599100000 1376000000 45014000 45368000 52205000 6153200000 6549100000 6586000000 65752000 96712000 81269000 1931300000 1971100000 2142200000 20839 463 20189 386708;386709;386710;386711;386712;386713;386714;386715;386716;386717;386718;386719;386720;386721;386722;386723;386724;386725;386726;386727;386728;386729;386730;386731;386732;386733;386734;386735;386736;386737;386738;386739;386740;386741;386742;386743;386744;386745;386746;386747;386748 236964;236965;236966;236967;236968;236969;236970;236971;236972;236973;236974;236975;236976;236977;236978;236979;236980;236981;236982;236983;236984;236985;236986;236987 236979 22 VAFQAVIK Unmodified 874.52764 0.52763852 354 P0A7L3 rplT 50S ribosomal protein L20 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.144 25.955 2 0.00075894 11897 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.37 81.307 6432800000 713420000 752900000 620280000 61777000 61830000 63554000 250000000 247470000 265170000 74261000 67724000 65528000 371250000 334620000 305110000 60794000 41968000 47877000 609640000 573430000 576900000 97230000 86443000 83582000 20840 354 20190 386749;386750;386751;386752;386753;386754;386755;386756;386757;386758;386759;386760;386761;386762;386763;386764;386765;386766;386767;386768;386769;386770;386771;386772 236988;236989;236990;236991;236992;236993;236994;236995;236996;236997;236998;236999;237000;237001;237002;237003;237004;237005;237006;237007;237008;237009;237010;237011;237012 237008 25 VAFSGGEFQLNADR Unmodified 1509.7212 0.72120596 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.278 34.501 2 2.9081E-14 16978 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.68 174.04 465840000 16212000 17412000 18160000 0 0 0 45057000 49775000 57120000 13286000 13313000 10909000 44154000 35176000 33895000 0 0 0 33344000 39424000 35843000 0 2763400 0 20841 1944 20191 386773;386774;386775;386776;386777;386778;386779;386780;386781;386782;386783;386784;386785;386786;386787;386788 237013;237014;237015;237016;237017;237018;237019;237020;237021;237022;237023;237024;237025;237026 237015 12 VAFSGGEFQLNADRDGK Unmodified 1809.8646 0.86457574 1944 P77804 ydgA Protein YdgA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 3 2 2 2 1 2 2 1 1 1 2 2 2 2 2 29.652 28.225 2;3 1.0675E-18 10633 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 235.73 198.04 935910000 19658000 14252000 16613000 19698000 16987000 16796000 6523200 65962000 56789000 135640000 145920000 129040000 2864300 35191000 30165000 14604000 11409000 9929400 4304500 46130000 43729000 30212000 32384000 31105000 20842 1944 20192 386789;386790;386791;386792;386793;386794;386795;386796;386797;386798;386799;386800;386801;386802;386803;386804;386805;386806;386807;386808;386809;386810;386811;386812;386813;386814;386815;386816;386817;386818;386819;386820;386821;386822;386823;386824;386825;386826;386827;386828;386829;386830 237027;237028;237029;237030;237031;237032;237033;237034;237035;237036;237037;237038;237039;237040;237041;237042;237043;237044;237045;237046;237047;237048;237049;237050;237051;237052;237053 237036 27 VAFTALVEK Unmodified 976.55933 0.55933258 354 P0A7L3 rplT 50S ribosomal protein L20 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.171 30.79 2 0.0001012 10455 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 135.83 130.39 6949100000 893550000 857460000 733330000 36281000 41969000 29279000 325690000 310050000 342830000 97772000 100240000 86146000 345640000 321120000 317310000 39990000 27694000 32265000 622120000 568800000 557330000 100690000 82437000 79073000 20843 354 20193 386831;386832;386833;386834;386835;386836;386837;386838;386839;386840;386841;386842;386843;386844;386845;386846;386847;386848;386849;386850;386851;386852;386853;386854 237054;237055;237056;237057;237058;237059;237060;237061;237062;237063;237064;237065;237066;237067;237068;237069;237070;237071;237072;237073;237074;237075;237076;237077;237078;237079;237080 237071 27 VAFTGSTEVGQQIMQYATQNIIPVTLELGGK Unmodified 3292.7013 0.70132873 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 2 55.715 54.265 3;4 6.8296E-13 26908 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.42 114.32 440090000 134650000 144370000 121660000 2038300 1521500 1443200 6810400 9982600 17616000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20844 1486 20194 386855;386856;386857;386858;386859;386860;386861;386862;386863;386864;386865;386866;386867 237081;237082 237082 2 VAFTPDEEVGK Unmodified 1190.5819 0.58191851 1333 P29745 pepT Peptidase T yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.178 23.28 2 0.0001186 9858 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 116.3 112.1 1282500000 120180000 103200000 110490000 0 0 1029600 148840000 133120000 139610000 0 0 0 104190000 101670000 100560000 0 0 0 70402000 71166000 78084000 0 0 0 20845 1333 20195 386868;386869;386870;386871;386872;386873;386874;386875;386876;386877;386878;386879;386880 237083;237084;237085;237086;237087;237088;237089;237090;237091 237089 4 VAGAPAQAAGNNDLDNELD Unmodified 1853.8391 0.83914885 1746 P69801 manY Mannose permease IIC component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.015 31.591 2 1.4033E-09 15166 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 118.77 115.44 645080000 10834000 8650300 10934000 5783600 6380300 5386800 72780000 71377000 73914000 17529000 37225000 55600000 37742000 47791000 46005000 6438500 5061700 5023600 40267000 28798000 25970000 13720000 11865000 0 20846 1746 20196 386881;386882;386883;386884;386885;386886;386887;386888;386889;386890;386891;386892;386893;386894;386895;386896;386897;386898;386899;386900;386901;386902;386903 237092;237093;237094;237095;237096;237097;237098;237099;237100;237101;237102;237103;237104;237105;237106;237107;237108;237109;237110;237111 237098 20 VAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK Unmodified 3627.922 0.92203762 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 44.472 43.006 4 3.2947E-13 17133 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 110.09 108.54 36609000 0 0 0 0 0 0 0 0 0 0 6230100 6448600 3286200 3388300 2463500 0 0 2415300 4282000 3817700 0 0 0 4277000 20847 1940 20197 386904;386905;386906;386907;386908;386909;386910;386911;386912 237112;237113 237113 2 VAGEMNLSK Unmodified 947.47462 0.47461667 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.857 15.308 2 0.00031838 4092 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 116.25 71.558 653030000 75848000 56180000 68688000 0 2504000 0 58735000 2973100 0 29489000 23844000 24243000 74187000 0 0 10543000 7396300 7657500 59996000 60906000 66467000 8901100 6941200 7530100 20848 1576 20198 386913;386914;386915;386916;386917;386918;386919;386920;386921;386922;386923;386924;386925;386926;386927;386928;386929;386930;386931 237114;237115;237116;237117;237118;237119;237120;237121;237122 237114 9 VAGFNLNTATWK Unmodified 1320.6826 0.68263561 1325 P28905 holC DNA polymerase III subunit chi yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.604 36.93 2 2.466E-06 17853 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 169.41 154.39 127930000 16323000 11232000 13867000 0 0 0 12386000 8098400 9065100 0 0 0 6917500 6266100 7679900 0 0 0 13097000 11161000 11834000 0 0 0 20849 1325 20199 386932;386933;386934;386935;386936;386937;386938;386939;386940;386941;386942;386943 237123;237124;237125;237126 237125 4 VAGFSPIPAMSMVSYASGAR Unmodified 1997.9703 0.97030314 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 1 2 1 1 2 2 2 2 2 2 2 52.413 51.091 2;3 6.7128E-15 20274 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 149.47 148.36 471630000 0 0 0 4313500 0 2764600 19947000 16919000 24726000 6629400 6143700 17272000 4849500 3941500 21199000 0 0 0 35212000 27277000 36393000 81644000 77269000 85127000 20850 205 20200 386944;386945;386946;386947;386948;386949;386950;386951;386952;386953;386954;386955;386956;386957;386958;386959;386960;386961;386962;386963;386964;386965;386966;386967;386968;386969;386970;386971;386972 237127;237128;237129;237130;237131;237132 237132 5 VAGITQDFTDGTTTNTGR Unmodified 1853.8755 0.87553435 1793 P75937 flgE Flagellar hook protein FlgE yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 29.184 27.939 2 4.6959E-14 12841 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 198.55 188 26071000 6616200 8744700 7704800 967400 1005800 1031800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20851 1793 20201 386973;386974;386975;386976;386977;386978 237133;237134 237134 2 VAGQSVIFEGTEGLPAQISR Unmodified 2058.0746 0.074568512 1945 P77808 yfaY NMN amidohydrolase-like protein YfaY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.723 42.208 2;3 4.926E-56 20867 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 278.82 272.88 466860000 33083000 27051000 30743000 0 0 0 44852000 41290000 42049000 0 0 0 54385000 38759000 35671000 0 0 0 43827000 42848000 32297000 0 0 0 20852 1945 20202 386979;386980;386981;386982;386983;386984;386985;386986;386987;386988;386989;386990;386991;386992;386993;386994;386995;386996;386997;386998;386999;387000;387001;387002 237135;237136;237137;237138;237139;237140;237141;237142;237143;237144;237145;237146;237147 237137 13 VAHECILDIR Unmodified 1224.6285 0.62849155 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 23.242 22.512 2;3 1.3307E-06 10111 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.09 144 637260000 40291000 46400000 41564000 0 0 0 72641000 66421000 54952000 0 0 0 48696000 44171000 42871000 0 0 0 57088000 56734000 65431000 0 0 0 20853 1409 20203 387003;387004;387005;387006;387007;387008;387009;387010;387011;387012;387013;387014;387015;387016;387017;387018;387019;387020;387021;387022;387023;387024;387025;387026 237148;237149;237150;237151;237152;237153;237154;237155;237156;237157;237158;237159;237160;237161;237162;237163;237164;237165;237166;237167;237168;237169 237149 22 VAHECILDIRPLK Unmodified 1562.8603 0.8602824 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 1 1 1 2 2 2 26.935 25.659 3;4 0.00016062 11613 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 83.204 79.885 992930000 83314000 47184000 46035000 0 0 0 109910000 111710000 102300000 0 1492500 0 40478000 35081000 47653000 0 0 0 134480000 113580000 119710000 0 0 0 20854 1409 20204 387027;387028;387029;387030;387031;387032;387033;387034;387035;387036;387037;387038;387039;387040;387041;387042;387043;387044;387045;387046;387047 237170;237171;237172;237173;237174;237175;237176;237177;237178;237179;237180;237181;237182;237183;237184;237185 237178 16 VAHECILDIRPLKEETGISELDIAK Unmodified 2848.5004 0.50044408 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 3 1 3 3 3 2 2 2 3 3 3 1 1 1 3 3 3 3 2 2 39.556 37.832 3;4;5 1.4824E-40 18858 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 208.97 203.52 5606400000 335280000 352810000 298420000 13667000 12945000 6975700 517970000 480640000 485650000 16162000 15072000 20591000 322320000 373340000 353210000 2154100 6496000 5009400 688000000 657600000 591910000 16473000 16550000 17216000 20855 1409 20205 387048;387049;387050;387051;387052;387053;387054;387055;387056;387057;387058;387059;387060;387061;387062;387063;387064;387065;387066;387067;387068;387069;387070;387071;387072;387073;387074;387075;387076;387077;387078;387079;387080;387081;387082;387083;387084;387085;387086;387087;387088;387089;387090;387091;387092;387093;387094;387095;387096;387097;387098;387099;387100;387101;387102;387103;387104;387105 237186;237187;237188;237189;237190;237191;237192;237193;237194;237195;237196;237197;237198;237199;237200;237201;237202;237203;237204;237205;237206;237207;237208;237209;237210;237211;237212;237213;237214;237215;237216;237217;237218;237219;237220;237221;237222;237223;237224;237225 237192 39 VAHLQSYIDR Unmodified 1200.6251 0.62512073 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.793 18.465 3 0.063893 6522 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 40.589 34.556 172820000 12062000 7310700 7728300 1129800 1450700 722960 21958000 15269000 18280000 0 0 0 11451000 10347000 10294000 0 0 0 18295000 19512000 17013000 0 0 0 20856 1664 20206 387106;387107;387108;387109;387110;387111;387112;387113;387114;387115;387116;387117;387118;387119;387120 237226 237226 0 VAIAGAGGR Unmodified 770.43989 0.43988615 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.227 13.081 2 0.0049018 3515 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 83.614 61.483 826170000 87762000 0 0 0 0 0 104440000 103760000 91625000 0 0 0 63037000 67754000 62799000 0 0 0 95264000 64515000 85213000 0 0 0 20857 85 20207 387121;387122;387123;387124;387125;387126;387127;387128;387129;387130 237227;237228;237229 237229 0 VAIANVLK Unmodified 826.52764 0.52763852 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.676 25.551 2 0.00079188 11021 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 122.98 48.54 4983100000 779910000 750080000 599890000 3148700 2793400 2686000 244770000 236010000 220220000 9201700 8969900 5880600 288440000 276330000 243010000 3821700 3689900 3080900 487830000 400380000 396810000 4982600 5078200 6039900 20858 377 20208 387131;387132;387133;387134;387135;387136;387137;387138;387139;387140;387141;387142;387143;387144;387145;387146;387147;387148;387149;387150;387151;387152;387153;387154 237230;237231;237232;237233;237234;237235;237236;237237;237238;237239;237240;237241;237242;237243;237244;237245;237246;237247;237248;237249 237247 20 VAIANVLKEEGFIEDFK Unmodified 1921.0197 0.019679395 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 48.041 46.661 2;3 4.5009E-14 22768 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 160.81 157.15 473460000 65983000 69152000 63970000 0 0 0 27417000 19946000 21546000 0 0 0 30745000 34541000 22494000 0 0 0 39817000 41399000 36454000 0 0 0 20859 377 20209 387155;387156;387157;387158;387159;387160;387161;387162;387163;387164;387165;387166;387167;387168;387169;387170;387171;387172;387173;387174;387175;387176;387177 237250;237251;237252;237253;237254;237255;237256;237257;237258;237259;237260;237261;237262;237263;237264;237265;237266 237253 12 VAIDAINAAGAPHCFLSVTK Unmodified 2054.0619 0.061895335 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 1 1 1 39.222 37.566 2;3 8.5338E-18 18205 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 160.03 158.62 3458100000 584850000 623530000 492660000 14735000 17350000 16107000 169710000 153360000 156310000 23399000 19657000 19779000 163340000 158310000 149180000 10440000 4871600 5803300 210310000 203780000 204150000 19114000 18107000 19263000 20860 639 20210 387178;387179;387180;387181;387182;387183;387184;387185;387186;387187;387188;387189;387190;387191;387192;387193;387194;387195;387196;387197;387198;387199;387200;387201;387202;387203;387204;387205;387206;387207;387208;387209;387210;387211;387212;387213;387214;387215;387216;387217 237267;237268;237269;237270;237271;237272;237273;237274;237275;237276;237277;237278;237279;237280;237281;237282;237283;237284;237285;237286;237287;237288;237289;237290 237284 24 VAIHDGFTLDDPK Unmodified 1426.7092 0.70924429 1060 P10443 dnaE DNA polymerase III subunit alpha yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.4 16.208 3 0.16966 5585 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 6.2759 3.777 220730000 18201000 19401000 15253000 0 0 0 21569000 21945000 19432000 0 0 0 18927000 12671000 15603000 0 0 0 18855000 20307000 18571000 0 0 0 20861 1060 20211 387218;387219;387220;387221;387222;387223;387224;387225;387226;387227;387228;387229 237291 237291 1 VAIIGAGPAGLACADVLTR Unmodified 1823.9928 0.99275314 219 P09832 gltD Glutamate synthase [NADPH] small chain no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 47.545 46.148 2;3 1.0423E-17 22578 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 173.72 172.13 1261900000 243120000 221050000 222030000 1235500 1593200 2184600 96484000 88095000 77048000 0 0 0 52099000 42626000 50198000 0 0 0 52152000 54279000 57730000 0 0 0 20862 219 20212 387230;387231;387232;387233;387234;387235;387236;387237;387238;387239;387240;387241;387242;387243;387244;387245;387246;387247;387248;387249;387250;387251;387252;387253;387254;387255;387256 237292;237293;237294;237295;237296;237297;237298;237299;237300;237301;237302;237303;237304;237305;237306;237307;237308;237309;237310;237311 237300 20 VAIMPGYTYGEEGR Unmodified 1541.7184 0.71842877 1205 P23256 malY Protein MalY;Cystathionine beta-lyase MalY;Maltose regulon modulator yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.193 31.754 2 0.010432 14949 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 58.172 54.852 170940000 12139000 14967000 10856000 0 0 0 16164000 14347000 14384000 0 0 0 16807000 14796000 15649000 0 0 0 13065000 15674000 12093000 0 0 0 20863 1205 20213 387257;387258;387259;387260;387261;387262;387263;387264;387265;387266;387267;387268 237312;237313 237313 1 VAINEAIELAK Unmodified 1169.6656 0.66558856 316 P0A780 nusB N utilization substance protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.091 32.684 2 6.7443E-05 15866 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 126.07 107.69 1686500000 141090000 133070000 120420000 8675700 8588300 10165000 137520000 149100000 140940000 0 27093000 27035000 102090000 87288000 96095000 10986000 8256300 8855100 147980000 148830000 140040000 11964000 10725000 9719100 20864 316 20214 387269;387270;387271;387272;387273;387274;387275;387276;387277;387278;387279;387280;387281;387282;387283;387284;387285;387286;387287;387288;387289;387290;387291 237314;237315;237316;237317;237318;237319;237320;237321;237322;237323;237324;237325;237326;237327;237328;237329;237330;237331;237332;237333;237334;237335;237336 237320 22 VAISGQDADLAGIK Unmodified 1356.7249 0.72489436 1470 P37387 xylF D-xylose-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 29.772 28.4 2 0.10735 12724 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 40.727 31.37 222320000 63597000 71342000 67032000 0 0 0 5699900 4701100 4579300 0 0 0 2917400 2453000 0 0 0 0 0 0 0 0 0 0 20865 1470 20215 387292;387293;387294;387295;387296;387297;387298;387299 237337 237337 0 VAITIAR Unmodified 742.47012 0.47012364 1640 P61714 ribE 6,7-dimethyl-8-ribityllumazine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.095 20.37 2 0.0007365 7427 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 146.21 78.324 5646600000 401300000 310380000 292050000 5552600 5085400 4882500 603240000 626350000 663970000 10387000 9100000 10122000 373990000 368390000 351140000 0 0 0 554650000 506590000 539010000 3529700 3511300 3352900 20866 1640 20216 387300;387301;387302;387303;387304;387305;387306;387307;387308;387309;387310;387311;387312;387313;387314;387315;387316;387317;387318;387319;387320 237338;237339;237340;237341;237342;237343;237344;237345;237346;237347;237348;237349;237350;237351;237352;237353;237354 237354 15 VAIVGFSTPNVMRPYVER Unmodified 2034.0721 0.072066091 1821 P76142 lsrB Autoinducer 2-binding protein LsrB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 41.883 40.343 3 1.141E-06 19811 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.767 90.788 98645000 35085000 31400000 32160000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20867 1821 20217 387321;387322;387323 237355;237356;237357 237355 3 VAKPVEEVNAEIQR Unmodified 1580.8522 0.85222014 255 P0A6K3 def Peptide deformylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 19.326 19.803 2;3 4.9943E-11 7246 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 129.17 120.85 638750000 62143000 50751000 44062000 693450 457910 0 62429000 63435000 56727000 0 0 0 43379000 51731000 43103000 0 0 543080 52906000 58889000 47503000 0 0 0 20868 255 20218 387324;387325;387326;387327;387328;387329;387330;387331;387332;387333;387334;387335;387336;387337;387338;387339;387340;387341;387342;387343;387344;387345;387346;387347;387348;387349;387350 237358;237359;237360;237361;237362;237363;237364;237365;237366;237367;237368;237369;237370;237371;237372;237373;237374;237375;237376;237377;237378;237379;237380 237378 23 VALADKYFAK Unmodified 1124.623 0.62299547 988 P0AG59 rpsN 30S ribosomal protein S14 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 22.394 21.928 2;3 0.0008437 7167 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 98.582 84.807 342310000 0 0 0 21949000 22929000 21676000 0 0 0 40380000 45917000 37627000 0 0 0 22625000 19104000 13898000 0 0 0 38019000 29126000 29060000 20869 988 20219 387351;387352;387353;387354;387355;387356;387357;387358;387359;387360;387361;387362;387363;387364;387365;387366;387367;387368;387369;387370;387371;387372;387373 237381;237382;237383;237384;237385;237386;237387;237388;237389;237390;237391;237392;237393;237394;237395;237396;237397;237398 237394 18 VALAENDLHVPTFTK Unmodified 1653.8726 0.87262123 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 1 2 2 2 2 2 1 1 1 1 1 2 1 1 1 2 2 1 35.674 34.031 2;3 6.5235E-09 16630 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 179.67 161.93 897550000 14528000 82833000 8334600 24951000 22011000 23093000 18408000 133400000 125490000 67275000 59335000 64405000 12785000 14662000 16433000 2973800 795800 1948500 26469000 27024000 26760000 54401000 61600000 7636200 20870 1426 20220 387374;387375;387376;387377;387378;387379;387380;387381;387382;387383;387384;387385;387386;387387;387388;387389;387390;387391;387392;387393;387394;387395;387396;387397;387398;387399;387400;387401;387402;387403;387404;387405;387406;387407;387408;387409 237399;237400;237401;237402;237403;237404;237405;237406;237407;237408;237409;237410;237411;237412;237413;237414;237415;237416;237417;237418;237419;237420;237421;237422;237423;237424;237425;237426;237427;237428 237408 26 VALAGAQDYYGVVPDLTCLGK Unmodified 2209.1089 0.10890511 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 2 2 2 52.517 51.372 2;3 8.258E-43 24080 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 230.86 210.73 2438000000 182690000 176370000 157450000 3891600 5035300 2498400 188280000 190280000 181020000 18818000 29671000 28966000 177150000 165300000 175080000 14532000 4181700 11143000 233750000 231240000 228220000 10842000 11370000 10271000 20871 1227 20221 387410;387411;387412;387413;387414;387415;387416;387417;387418;387419;387420;387421;387422;387423;387424;387425;387426;387427;387428;387429;387430;387431;387432;387433;387434;387435;387436;387437;387438;387439;387440;387441;387442;387443;387444;387445;387446;387447;387448;387449;387450;387451;387452;387453;387454 237429;237430;237431;237432;237433;237434;237435;237436;237437;237438;237439;237440;237441;237442;237443;237444;237445;237446;237447;237448;237449;237450;237451;237452;237453;237454;237455;237456 237453 27 VALATTHLPLR Unmodified 1190.7135 0.71354181 1158 P19624 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 25.021 24.05 3 0.046106 10854 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 40.154 32.288 246920000 34039000 41284000 28361000 0 0 0 14273000 13085000 0 0 0 0 19653000 0 17594000 0 0 0 17605000 27344000 33676000 0 0 0 20872 1158 20222 387455;387456;387457;387458;387459;387460;387461;387462;387463;387464 237457;237458;237459 237457 3 VALDNVNIK Unmodified 984.5604 0.56039521 1524 P39321 tamB Translocation and assembly module TamB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 19.686 20.176 2 0.027383 7772 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.788 31.639 459080000 62740000 59122000 53027000 0 0 0 32025000 30671000 33818000 0 0 0 32577000 31550000 27200000 0 0 0 32222000 32909000 31224000 0 0 0 20873 1524 20223 387465;387466;387467;387468;387469;387470;387471;387472;387473;387474;387475;387476 237460;237461;237462;237463;237464;237465;237466;237467 237462 8 VALDPLTGPMPYQGR Unmodified 1613.8236 0.82356254 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 1 42.177 40.6 2;3 4.2434E-47 18990 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 240.1 224.47 6583500000 1183000000 1109000000 997540000 747680 0 0 0 0 0 0 0 0 506600000 55533000 470520000 0 0 0 1011400000 1143500000 104490000 0 0 1167800 20874 392 20224 387477;387478;387479;387480;387481;387482;387483;387484;387485;387486;387487;387488;387489;387490;387491;387492;387493;387494;387495;387496 237468;237469;237470;237471;237472;237473;237474;237475;237476;237477;237478;237479;237480 237478 13 VALDPLTGPMPYQGR Oxidation (M) 1629.8185 0.81847717 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 2 1 1 2 2 2 36.701 35.097 2 1.7087E-06 17134 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.69 112.57 143860000 14129000 20453000 18405000 0 0 0 8344400 8359500 4038800 0 0 0 7720000 4534600 4068700 0 0 0 17037000 18327000 18445000 0 0 0 20875 392 20224 387497;387498;387499;387500;387501;387502;387503;387504;387505;387506;387507;387508;387509;387510;387511;387512;387513;387514;387515 237481;237482;237483;237484;237485;237486;237487;237488 237486 178 8 VALFSTGDELQLPGQPLGDGQIYDTNR Unmodified 2903.4301 0.43011591 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 1 2 2 2 2 2 1 53.782 52.341 2;3 1.0268E-30 25915 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 245.76 218.73 438570000 48942000 45830000 49063000 0 0 0 9554100 37427000 38221000 0 6754700 0 34335000 41302000 37816000 0 0 0 42503000 38849000 7974500 0 0 0 20876 1076 20225 387516;387517;387518;387519;387520;387521;387522;387523;387524;387525;387526;387527;387528;387529;387530;387531;387532;387533;387534;387535;387536;387537;387538 237489;237490;237491;237492;237493;237494;237495;237496 237492 8 VALGLNSANSINISR Unmodified 1527.8369 0.83690442 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.19 33.734 2 6.5263E-06 15514 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 130.1 117.09 205670000 30805000 23974000 25433000 0 0 0 9896800 9420800 9738300 0 0 0 12686000 12493000 14123000 0 0 0 17737000 19469000 19898000 0 0 0 20877 52 20226 387539;387540;387541;387542;387543;387544;387545;387546;387547;387548;387549;387550 237497;237498;237499;237500;237501;237502 237501 6 VALIENAEFVEGSDK Unmodified 1619.8043 0.80426689 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 2 1 1 38.03 36.215 2 7.0261E-15 17400 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 184.03 169.87 783900000 72168000 79181000 60213000 1174500 1195200 1032300 57237000 64167000 55074000 1946500 1382600 1546900 54423000 51783000 52838000 0 0 0 72051000 75668000 77972000 1602600 1247800 0 20878 60 20227 387551;387552;387553;387554;387555;387556;387557;387558;387559;387560;387561;387562;387563;387564;387565;387566;387567;387568;387569;387570;387571;387572;387573 237503;237504;237505;237506;237507;237508;237509;237510;237511;237512;237513;237514;237515 237506 8 VALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDK Unmodified 4071.8587 0.85872714 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 2 3 3 2 3 2 2 2 44.032 42.493 3;4;5 4.429E-38 21020 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 190.95 190.69 2307800000 71225000 80413000 94874000 0 0 0 375170000 278460000 310410000 0 0 0 229630000 227870000 167590000 0 0 0 159310000 170530000 142290000 0 0 0 20879 1806 20228 387574;387575;387576;387577;387578;387579;387580;387581;387582;387583;387584;387585;387586;387587;387588;387589;387590;387591;387592;387593;387594;387595;387596;387597;387598;387599;387600 237516;237517;237518;237519;237520;237521;237522;237523;237524;237525;237526;237527;237528;237529;237530;237531;237532;237533 237520 17 VALLSHSNFGSSDCPSSSK Unmodified 1978.9055 0.90545427 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 1 2 2 2 21.829 21.793 2;3 6.2796E-128 9283 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 404.24 402.12 3405800000 512780000 443600000 403340000 0 0 931060 241760000 240690000 248780000 2016100 0 1701500 178490000 175110000 183380000 0 839350 0 274870000 247540000 249980000 0 0 0 20880 1872 20229 387601;387602;387603;387604;387605;387606;387607;387608;387609;387610;387611;387612;387613;387614;387615;387616;387617;387618;387619;387620;387621;387622;387623;387624;387625;387626;387627;387628 237534;237535;237536;237537;237538;237539;237540;237541;237542;237543;237544;237545;237546;237547;237548;237549;237550;237551;237552;237553;237554;237555;237556;237557 237535 24 VALNKPDVAGLYHLVASGTTTWYDYAALVFEEAR Unmodified 3739.8886 0.88861223 1497 P37760 rfbD dTDP-4-dehydrorhamnose reductase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 55.669 54.203 4 1.4557E-13 26627 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 114.52 113.02 348590000 16249000 20239000 18678000 0 0 0 24828000 0 34047000 0 0 0 31982000 0 37241000 0 0 0 52274000 55008000 55914000 2131400 0 0 20881 1497 20230 387629;387630;387631;387632;387633;387634;387635;387636;387637;387638;387639 237558 237558 1 VALPDVPK Unmodified 837.496 0.49600404 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 1 1 2 1 2 25.992 24.805 1;2 0.0050114 11353 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 87.323 74.115 2441400000 630220000 609940000 540010000 0 1077200 0 130070000 130320000 132500000 1181800 0 1414400 30308000 24968000 25499000 0 0 0 60320000 60420000 63205000 0 0 0 20882 1254 20231 387640;387641;387642;387643;387644;387645;387646;387647;387648;387649;387650;387651;387652;387653;387654;387655;387656;387657;387658;387659;387660;387661;387662 237559;237560;237561;237562;237563;237564;237565;237566;237567;237568;237569;237570;237571 237561 12 VALPPDAVLTVTLSDASLADAPSK Unmodified 2350.2632 0.26315714 1931 P77717 ybaY Uncharacterized lipoprotein YbaY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 54.413 52.971 2;3 2.4789E-40 26261 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 212.69 198 896890000 177830000 161680000 170070000 33951000 39689000 38408000 25547000 28629000 20867000 18030000 14155000 17846000 10779000 7702500 6044000 0 0 0 42189000 35754000 30963000 5608900 3518300 7621800 20883 1931 20232 387663;387664;387665;387666;387667;387668;387669;387670;387671;387672;387673;387674;387675;387676;387677;387678;387679;387680;387681;387682;387683;387684;387685;387686;387687;387688;387689;387690;387691;387692;387693;387694;387695;387696;387697;387698;387699 237572;237573;237574;237575;237576;237577;237578;237579;237580 237576 9 VALQDAGLSVSDIDDVILVGGQTR Unmodified 2440.2809 0.28093247 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 54.505 53.068 2;3 1.4338E-71 26199 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 366.78 364.42 6458500000 567750000 497830000 487080000 49457000 42299000 55272000 531380000 502970000 408280000 128280000 151830000 174520000 424700000 394610000 367960000 0 0 0 559970000 542710000 468680000 54969000 37533000 10426000 20884 293 20233 387700;387701;387702;387703;387704;387705;387706;387707;387708;387709;387710;387711;387712;387713;387714;387715;387716;387717;387718;387719;387720;387721;387722;387723;387724;387725;387726;387727;387728;387729;387730;387731;387732;387733;387734;387735;387736;387737;387738;387739;387740 237581;237582;237583;237584;237585;237586;237587;237588;237589;237590;237591;237592;237593;237594;237595;237596;237597;237598;237599;237600;237601;237602;237603;237604;237605;237606;237607;237608;237609;237610;237611;237612;237613;237614;237615;237616;237617;237618;237619 237592 39 VALQGNMDPSMLYAPPAR Unmodified 1929.9441 0.94408839 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.596 40.897 2;3 7.7082E-18 20220 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 224.24 224.24 691010000 54983000 55590000 63057000 0 0 0 55992000 54426000 48770000 0 0 0 58319000 53248000 53382000 0 0 0 66667000 64067000 62509000 0 0 0 20885 1332 20234 387741;387742;387743;387744;387745;387746;387747;387748;387749;387750;387751;387752;387753;387754;387755;387756;387757;387758;387759;387760;387761;387762;387763;387764 237620;237621;237622;237623;237624;237625;237626;237627;237628;237629;237630;237631;237632;237633;237634;237635;237636;237637;237638;237639;237640;237641 237622 22 VALRPLADINTIFTEMEEGK Unmodified 2246.1617 0.16166896 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.4 52.927 3 3.4872E-10 25897 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 117.55 117.42 364840000 63465000 60435000 53321000 0 0 0 18144000 18754000 16086000 31089000 19396000 26983000 5379100 4864000 0 0 0 0 12192000 17198000 17535000 0 0 0 20886 1541 20235 387765;387766;387767;387768;387769;387770;387771;387772;387773;387774;387775;387776;387777;387778 237642;237643 237643 2 VALTGLTMAEK Unmodified 1132.6162 0.61619553 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.112 29.718 2 1.6219E-05 14129 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 140.45 113.75 9945500000 293660000 263290000 253070000 64558000 70092000 56915000 811570000 786140000 758540000 215670000 247740000 259220000 775110000 782050000 744760000 79647000 58937000 77334000 901520000 865400000 921620000 225230000 209540000 223900000 20887 646 20236 387779;387780;387781;387782;387783;387784;387785;387786;387787;387788;387789;387790;387791;387792;387793;387794;387795;387796;387797;387798;387799;387800;387801;387802 237644;237645;237646;237647;237648;237649;237650;237651;237652;237653;237654;237655;237656 237648 13 VALTGLTMAEK Oxidation (M) 1148.6111 0.61111015 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 1 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 2 1 1 1 1 1 2 2 2 25.422 24.202 2 0.0003737 10757 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 92.538 67.644 446210000 3778800 0 0 1993500 2058500 1929100 110380000 106170000 104490000 8367500 9044400 9406600 0 6125300 5368300 0 0 0 32605000 10294000 10678000 9534400 7616000 6368200 20888 646 20236 387803;387804;387805;387806;387807;387808;387809;387810;387811;387812;387813;387814;387815;387816;387817;387818;387819;387820;387821;387822;387823;387824;387825;387826 237657;237658;237659;237660;237661;237662;237663;237664;237665;237666;237667;237668;237669;237670;237671;237672 237664 354 12 VALVDGQR Unmodified 856.47667 0.47666558 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.077 15.627 2 0.0026864 3869 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 98.418 76.287 184480000 29670000 30088000 28450000 6000100 6640900 6886100 5563600 0 16758000 4862000 4541700 4938500 0 0 0 0 0 0 25918000 0 2533400 2700700 3898100 5032200 20889 1183 20237 387827;387828;387829;387830;387831;387832;387833;387834;387835;387836;387837;387838;387839;387840;387841;387842;387843 237673;237674;237675;237676;237677;237678;237679;237680;237681;237682 237678 10 VALVPTMGNLHDGHMK Unmodified 1718.8596 0.85963047 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 3 1 1 3 3 3 2 3 3 24.855 23.918 2;3;4 6.8241E-10 10617 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 136.96 119.15 1595900000 216700000 236680000 181150000 0 0 0 76649000 93616000 82759000 0 0 0 108710000 117990000 106270000 0 0 0 123880000 124540000 127000000 0 0 0 20890 1375 20238 387844;387845;387846;387847;387848;387849;387850;387851;387852;387853;387854;387855;387856;387857;387858;387859;387860;387861;387862;387863;387864;387865;387866;387867;387868;387869;387870;387871;387872;387873;387874 237683;237684;237685;237686;237687;237688;237689;237690;237691;237692;237693;237694 237689 12 VALVQPHEPGATTVPAR Unmodified 1741.9475 0.9475175 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 2 1 2 5 4 5 2 2 2 2 2 2 2 2 3 21.723 21.599 2;3;4 8.4198E-19 7223 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 189.3 186.26 15064000000 198270000 177650000 170180000 1984900 2426600 2785500 223000000 174490000 180000000 5120500000 3162100000 4669200000 128150000 124290000 132360000 0 0 0 152600000 182910000 153520000 41550000 32932000 33444000 20891 497 20239 387875;387876;387877;387878;387879;387880;387881;387882;387883;387884;387885;387886;387887;387888;387889;387890;387891;387892;387893;387894;387895;387896;387897;387898;387899;387900;387901;387902;387903;387904;387905;387906;387907;387908;387909;387910;387911;387912;387913;387914;387915;387916;387917;387918;387919;387920;387921;387922 237695;237696;237697;237698;237699;237700;237701;237702;237703;237704;237705;237706;237707;237708;237709;237710;237711;237712;237713;237714;237715;237716;237717;237718;237719;237720;237721;237722;237723;237724;237725;237726;237727;237728;237729;237730;237731;237732;237733;237734;237735 237698 41 VALVQPHEPGATTVPARK Unmodified 1870.0425 0.042480522 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 2 1 4 4 4 1 1 2 2 1 1 1 2 2 16.866 17.134 2;3;4 3.5749E-17 5005 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 212.59 206.15 6261200000 0 0 2589800 1182000 2622900 1393100 0 0 0 2951900000 1611300000 1651000000 2303700 0 1378500 2717900 3173900 1785800 2009000 0 2237200 0 6726500 16781000 20892 497 20240 387923;387924;387925;387926;387927;387928;387929;387930;387931;387932;387933;387934;387935;387936;387937;387938;387939;387940;387941;387942;387943;387944;387945;387946;387947;387948;387949;387950;387951;387952 237736;237737;237738;237739;237740;237741;237742;237743;237744;237745;237746;237747;237748;237749;237750;237751 237742 16 VALYGIDYLMK Unmodified 1284.6788 0.67879579 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 49.253 47.986 2;3 0.00017926 19295 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 107.15 94.117 21695000000 806680000 856860000 766990000 16134000 17141000 16335000 3014500000 3000800000 2811400000 35815000 41939000 40881000 2030200000 1949000000 1905500000 23999000 23559000 19419000 1500200000 1448200000 1314600000 19585000 16048000 18850000 20893 212 20241 387953;387954;387955;387956;387957;387958;387959;387960;387961;387962;387963;387964;387965;387966;387967;387968;387969;387970;387971;387972;387973;387974;387975;387976;387977;387978;387979;387980;387981;387982;387983;387984;387985 237752;237753;237754;237755;237756;237757;237758;237759;237760;237761;237762;237763;237764;237765;237766;237767;237768;237769;237770;237771;237772;237773;237774;237775;237776;237777;237778;237779;237780;237781;237782;237783 237756 32 VALYGIDYLMK Oxidation (M) 1300.6737 0.67371041 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 43.226 41.7 2 0.00035229 20734 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 94.692 82.844 176960000 9027800 9424900 7353900 0 0 0 44519000 30482000 0 0 0 0 30235000 0 0 0 0 0 15752000 15565000 14601000 0 0 0 20894 212 20241 387986;387987;387988;387989;387990;387991;387992;387993;387994;387995 237784;237785;237786;237787;237788;237789;237790;237791;237792;237793;237794;237795;237796 237785 82 13 VAMGMGQEDVSALR Unmodified 1462.6908 0.69083381 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.796 29.278 2 2.8266E-08 13788 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.04 147.89 197760000 22350000 19909000 22659000 0 2499100 0 9602900 10779000 10018000 3881700 4309000 3622800 10548000 8799800 11308000 0 956610 0 14160000 12819000 16984000 4366300 3848400 4340800 20895 582 20242 387996;387997;387998;387999;388000;388001;388002;388003;388004;388005;388006;388007;388008;388009;388010;388011;388012;388013;388014;388015 237797;237798;237799;237800;237801;237802;237803;237804;237805;237806;237807;237808;237809;237810 237802 11 VAMLSYSTGTSGAGSDVEK Unmodified 1858.8619 0.86185812 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.19 26.804 2 2.083E-29 12598 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 215.51 207.44 2110000000 111270000 110610000 97467000 1576600 1544200 1575500 225040000 214450000 222320000 29577000 20565000 23712000 179250000 185190000 194400000 0 0 0 168780000 169680000 146510000 2339700 1392200 2755500 20896 539 20243 388016;388017;388018;388019;388020;388021;388022;388023;388024;388025;388026;388027;388028;388029;388030;388031;388032;388033;388034;388035;388036 237811;237812;237813;237814;237815;237816;237817;237818;237819;237820;237821;237822;237823;237824;237825;237826 237814 16 VAMTLTGAK Unmodified 890.48954 0.48953845 1417 P33232 lldD L-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.917 19.227 2 0.0002835 7318 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 119.29 85.552 368600000 0 30609000 23759000 3035600 2398300 2936300 0 0 0 5655200 4735600 0 0 0 0 1141500 0 0 94079000 104270000 83836000 3691400 4671200 3779900 20897 1417 20244 388037;388038;388039;388040;388041;388042;388043;388044;388045;388046;388047;388048;388049;388050 237827;237828;237829;237830 237828 4 VAMVSMTGSVSAGEK Unmodified 1452.6953 0.69525049 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 5 8 8 1 1 1 1 1 1 2 1 3 3 2 31.05 29.856 2 3.3419E-10 13662 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 156.51 152.46 528500000 150840000 151710000 123830000 0 0 0 0 0 4209200 5011900 3710300 2854700 0 3401100 3597800 7187300 4642600 0 25689000 28251000 13568000 0 0 0 20898 1264 20245 388051;388052;388053;388054;388055;388056;388057;388058;388059;388060;388061;388062;388063;388064;388065;388066;388067;388068;388069;388070;388071;388072;388073;388074;388075;388076;388077;388078;388079;388080;388081;388082;388083;388084;388085;388086;388087;388088 237831;237832;237833;237834;237835;237836;237837;237838;237839;237840;237841;237842;237843;237844;237845;237846;237847;237848;237849;237850;237851;237852;237853;237854;237855;237856;237857;237858;237859 237856 18 VANAFAQEWQK Unmodified 1290.6357 0.63568542 1568 P45464 lpoA Penicillin-binding protein activator LpoA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.154 26.885 2 9.0155E-05 10391 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 121.73 117.43 75120000 5624800 4853700 5811000 1186000 977120 1139900 4732900 3705000 3630600 4736000 3654400 4328100 0 0 2894000 1878400 720360 0 5793500 8528100 8352200 0 0 2573600 20899 1568 20246 388089;388090;388091;388092;388093;388094;388095;388096;388097;388098;388099;388100;388101;388102;388103;388104;388105;388106;388107;388108 237860;237861;237862;237863 237860 4 VANDDGYDLGQGAGFYLNATQPPWATHYR Unmodified 3196.4639 0.46387565 1405 P33018 yeiG S-formylglutathione hydrolase YeiG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 49.651 48.297 3 1.1651E-05 23487 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.051 69.447 67068000 18969000 25587000 16173000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6339900 0 0 0 0 20900 1405 20247 388109;388110;388111;388112 237864;237865;237866 237866 3 VANIYDSLHPAMLR Unmodified 1598.8239 0.8238969 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.979 34.257 3 6.2553E-05 16279 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 85.554 85.275 189010000 21993000 25631000 24268000 2155500 1633500 1939200 10880000 10380000 7819200 0 3696400 4161200 6257300 9314900 9017800 0 0 0 14910000 13130000 13951000 2274100 2581100 3015000 20901 1459 20248 388113;388114;388115;388116;388117;388118;388119;388120;388121;388122;388123;388124;388125;388126;388127;388128;388129;388130;388131;388132;388133 237867;237868;237869;237870;237871 237871 5 VANLAEAQPDR Unmodified 1182.5993 0.59929991 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.563 16.202 2 7.0522E-05 5642 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.48 109.28 1764000000 138740000 148700000 136120000 0 0 917380 106540000 140460000 148090000 2764600 2292100 1985500 148070000 120100000 141970000 0 0 0 174020000 173490000 178850000 0 913930 0 20902 62 20249 388134;388135;388136;388137;388138;388139;388140;388141;388142;388143;388144;388145;388146;388147;388148;388149;388150 237872;237873 237872 1 VANLAEAQPDREIEK Unmodified 1681.8635 0.8635131 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 18.122 18.621 2;3 2.9165E-45 6921 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 297.05 291.58 3134500000 272160000 281170000 241580000 9786400 8986000 9916100 324530000 298060000 230230000 25750000 12076000 26405000 176290000 170650000 144560000 0 0 0 303120000 292690000 306540000 0 0 0 20903 62 20250 388151;388152;388153;388154;388155;388156;388157;388158;388159;388160;388161;388162;388163;388164;388165;388166;388167;388168;388169;388170;388171;388172;388173;388174;388175;388176;388177;388178;388179;388180;388181;388182;388183;388184;388185 237874;237875;237876;237877;237878;237879;237880;237881;237882;237883;237884;237885;237886;237887;237888;237889;237890;237891;237892;237893;237894;237895;237896;237897;237898;237899 237885 25 VANLAEAQPDREIEKR Unmodified 1837.9646 0.96462413 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.379 16.021 3 6.4399E-07 5533 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.07 95.795 146560000 11553000 10153000 7907100 2642500 2617800 1809700 9690200 10714000 9214500 5675600 5401000 5781900 6307900 4325600 4386100 0 0 0 11200000 12230000 13044000 3972300 4044300 3890400 20904 62 20251 388186;388187;388188;388189;388190;388191;388192;388193;388194;388195;388196;388197;388198;388199;388200;388201;388202;388203;388204;388205;388206 237900;237901;237902;237903;237904;237905;237906;237907;237908;237909;237910;237911;237912 237903 13 VANLEAQLAEAQTR Unmodified 1512.7896 0.78961988 211 P09372 grpE Protein GrpE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 1 2 2 2 2 1 1 1 1 1 2 2 1 1 1 1 30.651 29.148 2;3 9.2142E-36 13799 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 268.98 264.89 10385000000 826410000 735040000 805390000 27772000 22733000 28298000 1071900000 986430000 779600000 139810000 128250000 123630000 700580000 697640000 458030000 9808900 6349400 6322100 977530000 965900000 796480000 30925000 29496000 30664000 20905 211 20252 388207;388208;388209;388210;388211;388212;388213;388214;388215;388216;388217;388218;388219;388220;388221;388222;388223;388224;388225;388226;388227;388228;388229;388230;388231;388232;388233;388234;388235;388236;388237;388238;388239;388240;388241;388242 237913;237914;237915;237916;237917;237918;237919;237920;237921;237922;237923;237924;237925;237926;237927;237928;237929;237930;237931;237932;237933;237934;237935;237936;237937;237938;237939 237921 27 VANLGSLGDQVNVK Unmodified 1412.7623 0.7623425 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 2 2 30.105 28.78 2;3 4.0276E-11 10905 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 171.92 151.62 3591800000 1427000000 0 1227700000 63029000 49016000 58718000 0 0 0 87803000 74889000 80247000 0 20807000 17544000 62217000 44926000 60166000 18047000 0 19050000 102190000 83413000 95071000 20906 364 20253 388243;388244;388245;388246;388247;388248;388249;388250;388251;388252;388253;388254;388255;388256;388257;388258;388259;388260;388261;388262;388263;388264;388265;388266;388267;388268;388269;388270;388271;388272;388273;388274;388275 237940;237941;237942;237943;237944;237945;237946;237947;237948;237949;237950;237951;237952;237953;237954;237955;237956;237957;237958;237959 237945 20 VANLPFVGSDVLASAACMDK Unmodified 2064.002 0.001997195 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 52.784 51.446 2;3 2.713E-23 24195 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 194.48 183.87 482480000 8645700 32483000 32403000 0 0 0 39045000 38536000 34038000 0 0 0 57013000 47292000 46147000 0 0 0 51419000 50195000 45260000 0 0 0 20907 253 20254 388276;388277;388278;388279;388280;388281;388282;388283;388284;388285;388286;388287;388288;388289;388290;388291;388292;388293;388294;388295;388296;388297 237960;237961;237962;237963;237964;237965;237966;237967;237968;237969;237970 237967 11 VANLPFVGSDVLASAACMDKDVTK Unmodified 2507.24 0.23999564 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 50.13 48.728 3 1.0875E-06 24061 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 100.62 97.285 1198600000 115520000 105530000 98404000 0 0 0 104900000 108070000 98148000 0 0 0 116910000 112180000 105340000 0 0 0 0 119620000 114020000 0 0 0 20908 253 20255 388298;388299;388300;388301;388302;388303;388304;388305;388306;388307;388308 237971;237972;237973 237973 3 VANLTAFTPDFK Unmodified 1322.6871 0.68705229 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.983 40.284 2 2.2043E-08 18931 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 168.79 145.37 608620000 71490000 68641000 73769000 0 0 0 46640000 51456000 44259000 0 0 0 38711000 40465000 40148000 0 0 0 39035000 43517000 50485000 0 0 0 20909 904 20256 388309;388310;388311;388312;388313;388314;388315;388316;388317;388318;388319;388320 237974;237975;237976;237977;237978;237979 237978 6 VAPEALTLLAR Unmodified 1152.6867 0.68665836 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.939 39.08 2 1.2842E-05 19538 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 144.09 121.35 2624600000 416790000 394360000 370080000 6153500 6778100 7113200 120510000 91763000 107120000 6241200 5289800 5526900 131630000 127440000 119370000 0 0 0 234580000 235700000 217470000 6380900 7037600 7223100 20910 696 20257 388321;388322;388323;388324;388325;388326;388327;388328;388329;388330;388331;388332;388333;388334;388335;388336;388337;388338;388339;388340;388341 237980;237981;237982;237983;237984;237985;237986;237987;237988;237989;237990;237991;237992;237993;237994;237995;237996;237997 237982 18 VAPGVQALVVPGSGPVK Unmodified 1573.9192 0.91917749 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.124 35.312 2 9.0123E-07 17081 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.02 132.56 310290000 87693000 87647000 68527000 0 0 0 7130200 6559200 6680100 826320 962610 0 6948200 7189800 5921500 0 0 0 7515900 9624700 7061600 0 0 0 20911 225 20258 388342;388343;388344;388345;388346;388347;388348;388349;388350;388351;388352;388353;388354;388355 237998;237999;238000;238001 237999 3 VAPGWCVDRPHLVK Unmodified 1632.8559 0.85586573 711 P0ACA1 yibF Uncharacterized GST-like protein YibF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 22.26 22.007 3;4 0.0063188 9090 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 43.184 31.207 711550000 82243000 72585000 84186000 0 0 0 73660000 59649000 51591000 0 0 0 31289000 36152000 27190000 0 0 0 58810000 67792000 66403000 0 0 0 20912 711 20259 388356;388357;388358;388359;388360;388361;388362;388363;388364;388365;388366;388367;388368;388369;388370;388371;388372;388373;388374;388375;388376;388377;388378;388379 238002;238003;238004;238005;238006 238003 4 VAPILYMEGACGVR Unmodified 1534.7636 0.76360482 1323 P28903 nrdD Anaerobic ribonucleoside-triphosphate reductase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 2 2 2 2 1 2 40.59 38.874 2;3 4.7218E-11 18229 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 170.47 159.71 719120000 11131000 15802000 15603000 0 0 0 76813000 88048000 75822000 0 2135900 0 84055000 91057000 75729000 0 0 0 88441000 18486000 75998000 0 0 0 20913 1323 20260 388380;388381;388382;388383;388384;388385;388386;388387;388388;388389;388390;388391;388392;388393;388394;388395;388396;388397;388398;388399;388400;388401;388402 238007;238008;238009;238010;238011;238012;238013;238014;238015;238016;238017;238018;238019;238020;238021;238022 238017 14 VAPITTGDVVLQSAR Unmodified 1525.8464 0.84640648 781 P0ADC3 lolC Lipoprotein-releasing system transmembrane protein LolC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 2 1 1 1 2 1 1 1 1 1 38.969 37.344 2;3 8.6967E-06 15313 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 95.401 88.273 184240000 24244000 26978000 3964600 0 0 0 12460000 13559000 25285000 2221700 2071400 3042700 25767000 0 7414400 0 0 0 18036000 7999900 9715600 0 1481900 0 20914 781 20261 388403;388404;388405;388406;388407;388408;388409;388410;388411;388412;388413;388414;388415;388416;388417;388418;388419;388420;388421 238023;238024;238025;238026;238027;238028;238029;238030;238031 238027 9 VAPLYFAFR Unmodified 1082.5913 0.59130141 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 46.162 44.656 2 8.9486E-05 22144 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.85 136.01 82891000 3632800 3784600 3237500 0 0 0 12387000 11796000 12075000 0 0 3063800 5920000 4590500 5434200 0 0 0 6021500 6201100 4746700 0 0 0 20915 664 20262 388422;388423;388424;388425;388426;388427;388428;388429;388430;388431;388432;388433;388434 238032;238033;238034 238034 3 VAPMQSFSLGK Unmodified 1163.6009 0.60087982 1304 P27434 rodZ Cytoskeleton protein RodZ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.92 30.333 2 0.072915 10403 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 42.348 31.657 105580000 3992500 4649700 3386000 2281100 1903800 2001200 8255800 5783300 7758200 8508200 5339500 5663500 4811300 4859900 5978600 0 0 0 6261300 7576500 6054500 3390100 3692500 3429600 20916 1304 20263 388435;388436;388437;388438;388439;388440;388441;388442;388443;388444;388445;388446;388447;388448;388449;388450;388451;388452;388453;388454;388455 238035 238035 1 VAPTTELFPMSK Unmodified 1319.6795 0.67952407 1296 P27250 ahr Aldehyde reductase Ahr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 36.853 35.193 2 5.2719E-05 16906 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 115.78 100.92 289350000 58178000 53053000 51054000 0 0 0 30883000 32579000 0 0 0 0 11982000 0 0 0 0 0 17299000 18374000 15948000 0 0 0 20917 1296 20264 388456;388457;388458;388459;388460;388461;388462;388463;388464;388465 238036;238037;238038;238039;238040;238041;238042;238043;238044;238045 238043 8 VAQEMQK Unmodified 832.41129 0.41128813 342 P0A7G2 rbfA Ribosome-binding factor A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.758 11.238 2 0.0021324 2185 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 117.7 60.235 288530000 0 43435000 0 0 0 0 29191000 30702000 30205000 15469000 14018000 13934000 4836100 4996300 2331100 4174600 4719900 3114300 31447000 23401000 0 10326000 12204000 10030000 20918 342 20265 388466;388467;388468;388469;388470;388471;388472;388473;388474;388475;388476;388477;388478;388479;388480;388481;388482;388483 238046;238047;238048 238048 3 VAQFLSR Unmodified 819.46029 0.46028724 1291 P27238 yfeD Uncharacterized protein YfeD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.432 19.736 2 0.0011877 5661 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 134.44 56.689 184030000 4503700 2066500 2327000 0 0 0 29029000 0 0 1108800 1087200 1499800 38971000 4659600 35239000 6364700 5466900 4999900 13488000 16226000 16179000 0 811090 0 20919 1291 20266 388484;388485;388486;388487;388488;388489;388490;388491;388492;388493;388494;388495;388496;388497;388498;388499;388500 238049;238050;238051 238050 3 VAQGAKPGEGGQLPGDK Unmodified 1607.8267 0.82673367 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 11.905 12.68 2 2.2344E-19 3501 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 200.97 187.77 138470000 0 54172000 46524000 0 0 0 0 0 22273000 0 0 0 0 0 0 0 0 0 0 0 15504000 0 0 0 20920 218 20267 388501;388502;388503;388504;388505;388506;388507 238052;238053;238054;238055;238056;238057 238057 6 VAQGELENGR Unmodified 1071.5309 0.530886 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.729 12.582 2 8.0822E-07 3431 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 171.73 164.54 585180000 72440000 77915000 61691000 0 0 581020 40723000 47276000 36713000 0 0 0 36879000 37732000 41057000 0 0 0 44869000 46564000 40741000 0 0 0 20921 94 20268 388508;388509;388510;388511;388512;388513;388514;388515;388516;388517;388518;388519;388520 238058;238059;238060;238061;238062;238063;238064;238065 238062 8 VAQIIAER Unmodified 898.52362 0.52361577 138 P06986 hisC Histidinol-phosphate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 2 2 2 1 1 1 1 1 20.971 20.653 2 8.9999E-05 6142 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.11 110 617650000 140530000 44302000 0 0 0 0 99741000 103320000 100920000 0 0 1808100 0 0 0 0 0 0 0 21885000 103100000 0 959160 1078800 20922 138 20269 388521;388522;388523;388524;388525;388526;388527;388528;388529;388530;388531;388532;388533;388534;388535 238066;238067;238068;238069;238070;238071;238072;238073 238073 5 VAQIMLYAGVK Unmodified 1191.6686 0.66856545 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 35.792 34.327 2 0.045509 17012 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 52.867 51.001 121290000 0 0 0 0 0 0 21827000 19004000 15254000 0 0 0 11618000 13339000 13889000 0 0 662180 7204700 8338700 10149000 0 0 0 20923 1947 20270 388536;388537;388538;388539;388540;388541;388542;388543;388544;388545 238074;238075 238074 0 VAQSDSVINGLKEENQK Unmodified 1857.9432 0.94321999 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.724 19.997 3 0.0017121 6503 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 61.815 51.894 82886000 2684900 0 0 6416400 4815700 2950200 0 4816900 6769400 6323900 5319700 5335200 4368900 4014700 3215500 1275600 2165900 2319200 6807700 6586400 6699400 0 0 0 20924 807 20271 388546;388547;388548;388549;388550;388551;388552;388553;388554;388555;388556;388557;388558;388559;388560;388561;388562;388563;388564 238076;238077;238078;238079;238080;238081;238082;238083 238076 8 VAQSLQTWR Unmodified 1087.5774 0.57744226 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.258 21.511 2 6.5929E-08 8630 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 190.26 154.08 741750000 113930000 121480000 87939000 1205500 1210900 1033300 66246000 47778000 53974000 0 0 0 35798000 36422000 37781000 0 0 0 44345000 51489000 39076000 894610 1145700 0 20925 1788 20272 388565;388566;388567;388568;388569;388570;388571;388572;388573;388574;388575;388576;388577;388578;388579;388580;388581 238084;238085;238086;238087;238088;238089;238090;238091;238092 238088 8 VAQTLDSINGGEAYQK Unmodified 1692.8319 0.83187862 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.683 22.89 2 3.4212E-39 9836 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 256.63 255.84 192860000 24207000 19676000 19171000 0 0 0 9108000 12309000 10415000 0 701750 0 15924000 19166000 16463000 0 0 0 14886000 14078000 16755000 0 0 0 20926 289 20273 388582;388583;388584;388585;388586;388587;388588;388589;388590;388591;388592;388593;388594 238093;238094;238095;238096;238097;238098;238099;238100 238096 8 VAQVGKPLELYHYPADR Unmodified 1955.0265 0.026496107 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 3 2 3 1 1 1 25.508 24.45 2;3;4 1.8285E-06 9263 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 90.223 86.255 1539900000 18484000 16735000 15515000 3479200 3179200 2531800 116250000 108580000 115910000 42939000 41503000 36727000 108920000 100540000 87778000 35924000 19447000 22713000 186440000 205410000 186420000 27454000 20374000 16685000 20927 1718 20274 388595;388596;388597;388598;388599;388600;388601;388602;388603;388604;388605;388606;388607;388608;388609;388610;388611;388612;388613;388614;388615;388616;388617;388618;388619;388620;388621;388622;388623;388624;388625;388626;388627;388628;388629;388630;388631;388632;388633;388634;388635;388636;388637 238101;238102;238103;238104;238105;238106;238107;238108;238109;238110;238111;238112;238113;238114;238115;238116;238117;238118;238119;238120;238121;238122;238123;238124;238125;238126;238127;238128 238106 28 VAQYISFLELNQIAK Unmodified 1735.9509 0.95087155 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 52.156 50.911 2;3 6.1706E-07 25260 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.809 73.905 1260700000 81918000 75445000 73163000 0 0 1133500 123350000 118220000 114660000 0 0 0 113270000 116240000 107390000 0 0 0 105050000 116030000 114820000 0 0 0 20928 803 20275 388638;388639;388640;388641;388642;388643;388644;388645;388646;388647;388648;388649;388650;388651;388652;388653;388654;388655;388656;388657;388658;388659;388660;388661;388662 238129;238130;238131;238132;238133;238134;238135;238136;238137;238138;238139;238140;238141 238129 13 VASEPIGQR Unmodified 955.50869 0.50869399 474 P0A8Z0 yciA Acyl-CoA thioester hydrolase YciA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 11.999 12.914 2 3.2916E-05 3596 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 137.18 99.046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20929 474 20276 388663;388664;388665;388666;388667 238142;238143;238144;238145;238146 238144 5 VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR Unmodified 4172.9684 0.96841224 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 1 2 1 1 1 1 1 1 2 2 1 1 2 1 2 1 1 1 1 44.18 42.776 4;5 8.9592E-13 15018 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 97.003 95.74 344250000 48730000 28045000 41821000 0 3511800 6918200 14502000 12502000 9506000 13071000 18170000 21990000 0 11755000 9009400 23142000 17897000 20121000 0 18365000 13414000 7333800 4445400 0 20930 297 20277 388668;388669;388670;388671;388672;388673;388674;388675;388676;388677;388678;388679;388680;388681;388682;388683;388684;388685;388686;388687;388688;388689;388690;388691;388692;388693 238147;238148;238149;238150;238151;238152;238153;238154 238150 8 VASIEMDECDPR Unmodified 1420.5963 0.59626472 1901 P77364 glxK Glycerate kinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 22.639 21.897 2 0.15991 9351 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 38.567 38.567 28385000 0 0 0 0 0 0 4781600 6100000 5532100 0 0 0 0 0 0 0 0 0 4593100 3068900 4308900 0 0 0 20931 1901 20278 388694;388695;388696;388697;388698;388699 238155 238155 0 VASIIGR Unmodified 714.43882 0.43882351 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.634 17.391 2 0.011226 6093 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.29 33.896 2765800000 122380000 113150000 101520000 0 0 0 349860000 375260000 373370000 0 0 0 237510000 241560000 197800000 0 0 0 251500000 215730000 186130000 0 0 0 20932 1487 20279 388700;388701;388702;388703;388704;388705;388706;388707;388708;388709;388710;388711 238156;238157;238158;238159 238159 0 VASLHVPAVVSSAR Unmodified 1391.7885 0.78849767 1530 P39356 yjhU Uncharacterized transcriptional regulator YjhU yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 26.127 24.507 3 0.0093164 8931 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 49.482 43.998 22816000 0 0 0 0 0 0 0 0 9026000 4177500 3131900 4111600 0 0 0 0 0 0 0 0 0 2368600 0 0 20933 1530 20280 388712;388713;388714;388715;388716 238160 238160 1 VASLVSR Unmodified 730.43374 0.43373813 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.155 14.69 2 0.00043973 3825 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 154.09 83.028 570310000 8626300 9674900 8209700 2463700 1836400 1681600 0 5642400 0 0 0 0 0 0 0 212450000 152590000 157960000 0 0 0 1134500 6502900 1538100 20934 1005 20281 388717;388718;388719;388720;388721;388722;388723;388724;388725;388726;388727;388728;388729 238161 238161 1 VASPAIVEAK Unmodified 983.56515 0.56514624 972 P0AFY8 seqA Negative modulator of initiation of replication yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 17.56 18.263 2 0.0051618 6768 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.643 68.227 58839000 6107700 5175100 4412600 0 0 0 5781800 0 4300400 0 0 0 6110000 5111600 5200800 0 0 0 6667600 4606700 5365200 0 0 0 20935 972 20282 388730;388731;388732;388733;388734;388735;388736;388737;388738;388739;388740 238162;238163;238164 238162 0 VASTAVVAEMLGLTR Unmodified 1516.8283 0.82831357 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 53.584 52.178 2;3 1.3745E-20 25812 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 173.06 160.43 1299500000 461250000 429210000 409020000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20936 1888 20283 388741;388742;388743;388744;388745;388746 238165;238166;238167;238168;238169;238170 238166 6 VATDDIGFAIYQVDLSK Unmodified 1853.9411 0.94109472 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 51.799 50.552 2 2.7308E-10 24866 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.09 132.3 145090000 17893000 21192000 20702000 0 0 0 12837000 10029000 8458100 0 0 0 12886000 8430400 11799000 0 0 0 0 11203000 9663800 0 0 0 20937 184 20284 388747;388748;388749;388750;388751;388752;388753;388754;388755;388756;388757 238171;238172;238173 238171 3 VATEFSETAPATLK Unmodified 1463.7508 0.75077476 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 2 1 1 1 2 3 2 1 1 1 3 2 2 1 1 1 27.858 26.662 2;3 2.5648E-14 12337 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 220.94 215.16 33405000000 3188700000 3193500000 2579500000 8682500 9801300 9366400 3426800000 3367700000 3268200000 4134700 6506400 5340300 2182900000 2079000000 1991200000 2547900 2030000 2390600 2564600000 2626200000 2876800000 3010300 2629500 2899600 20938 321 20285 388758;388759;388760;388761;388762;388763;388764;388765;388766;388767;388768;388769;388770;388771;388772;388773;388774;388775;388776;388777;388778;388779;388780;388781;388782;388783;388784;388785;388786;388787;388788;388789;388790;388791;388792;388793;388794;388795;388796;388797;388798;388799 238174;238175;238176;238177;238178;238179;238180;238181;238182;238183;238184;238185;238186;238187;238188;238189;238190;238191;238192;238193;238194;238195;238196;238197;238198;238199;238200;238201;238202;238203;238204;238205;238206;238207;238208;238209;238210;238211;238212;238213;238214;238215;238216;238217;238218;238219;238220;238221;238222;238223 238185 50 VATGGIAK Unmodified 715.42284 0.4228391 1916 P77552 ydhQ Uncharacterized protein YdhQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 11.048 11.803 2 0.045589 2961 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 60.709 32.137 315650000 0 0 0 0 0 0 118890000 94934000 101820000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20939 1916 20286 388800;388801;388802 238224;238225;238226 238226 3 VATIQTLGGSGALK Unmodified 1314.7507 0.75071518 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.872 26.647 2 2.3528E-14 12245 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 185.77 63.253 1067700000 117410000 114940000 91375000 913020 1041300 934340 95904000 100960000 81744000 0 0 0 63208000 57373000 60218000 0 0 0 99695000 87908000 92299000 0 835620 970460 20940 91 20287 388803;388804;388805;388806;388807;388808;388809;388810;388811;388812;388813;388814;388815;388816;388817;388818;388819 238227;238228;238229;238230;238231;238232;238233;238234;238235;238236;238237;238238 238230 12 VATISGSDAK Unmodified 947.49238 0.49237523 201 P09127 hemX Putative uroporphyrinogen-III C-methyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 12.005 12.12 2 0.00019061 2710 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 122.13 53.713 41249000 0 0 0 0 0 0 0 0 0 11881000 10540000 8717900 0 0 0 0 1889400 2764900 0 0 0 5456100 0 0 20941 201 20288 388820;388821;388822;388823;388824;388825 238239 238239 1 VATLEDATEMVNLYR Unmodified 1723.8451 0.84508585 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 1 2 1 2 2 2 1 3 3 3 1 1 1 2 2 2 2 2 1 48.256 46.985 2;3 1.3065E-56 22850 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 305.17 301.87 3566300000 317920000 318830000 306490000 1352900 8174600 1569300 131000000 121890000 122680000 4390100 0 0 283090000 257940000 244820000 2561000 1824900 1314500 445100000 475510000 467040000 20855000 25082000 6833800 20942 937 20289 388826;388827;388828;388829;388830;388831;388832;388833;388834;388835;388836;388837;388838;388839;388840;388841;388842;388843;388844;388845;388846;388847;388848;388849;388850;388851;388852;388853;388854;388855;388856;388857;388858;388859;388860;388861;388862;388863;388864;388865;388866 238240;238241;238242;238243;238244;238245;238246;238247;238248;238249;238250;238251;238252;238253;238254;238255;238256;238257;238258;238259;238260;238261 238252 22 VATNLAR Unmodified 743.42899 0.42898711 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 2 1 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 2 2 13.005 13.621 2 0.00043229 2556 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 154.29 76.386 2123400000 67605000 66802000 24855000 33724000 30900000 33424000 171540000 171410000 144720000 67979000 70263000 34659000 106870000 88259000 97037000 87511000 74417000 85655000 157330000 159260000 139580000 75684000 68372000 65576000 20943 595 20290 388867;388868;388869;388870;388871;388872;388873;388874;388875;388876;388877;388878;388879;388880;388881;388882;388883;388884;388885;388886;388887;388888;388889;388890;388891;388892;388893;388894;388895;388896;388897;388898;388899;388900;388901;388902;388903;388904;388905;388906;388907;388908;388909;388910;388911;388912 238262;238263;238264;238265;238266;238267;238268;238269;238270;238271;238272;238273;238274;238275;238276;238277 238274 16 VATSLREHIK Unmodified 1152.6615 0.66150624 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 11.752 12.188 3 0.00193 2667 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 63.426 46.059 67474000 0 0 0 0 1180900 1150500 0 0 0 0 13174000 12761000 0 0 0 5688500 0 0 0 0 0 8500900 14105000 10913000 20944 936 20291 388913;388914;388915;388916;388917;388918;388919;388920;388921 238278;238279;238280;238281;238282 238282 5 VATTDEEPILGQTYLPR Unmodified 1901.9735 0.97345748 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 41.346 39.579 2;3 2.1705E-32 18614 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 247.88 225 1962100000 224140000 209180000 181200000 0 0 0 146650000 141650000 143580000 2224200 1864800 2192600 120130000 123770000 112430000 0 0 0 179000000 185820000 188300000 0 0 0 20945 1143 20292 388922;388923;388924;388925;388926;388927;388928;388929;388930;388931;388932;388933;388934;388935;388936;388937;388938;388939;388940;388941;388942;388943;388944;388945;388946;388947;388948 238283;238284;238285;238286;238287;238288;238289;238290;238291;238292;238293;238294;238295;238296;238297;238298;238299;238300;238301;238302;238303 238299 21 VATTIGEK Unmodified 817.45453 0.45453316 947 P0AFJ7 pitA Low-affinity inorganic phosphate transporter 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.878 12.572 2 0.085812 2913 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 58.782 42.227 150330000 0 0 0 1972800 1439900 1468200 8729300 14345000 11205000 4788700 3462300 4306900 13752000 9986700 9030900 0 0 0 20236000 19133000 17150000 3077000 2897300 3349700 20946 947 20293 388949;388950;388951;388952;388953;388954;388955;388956;388957;388958;388959;388960;388961;388962;388963;388964;388965;388966 238304;238305;238306 238304 0 VATVSLPR Unmodified 841.50215 0.50215205 5 CON__P00761 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 3 2 2 1 1 1 1 1 1 2 2 2 1 1 1 24.657 24.203 2 0.00030221 6798 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 146.94 95.979 77834000000 2530100000 2525800000 2271400000 3735500000 3469000000 3582400000 2893500000 2810200000 2795900000 4668200000 4496100000 4677800000 3474000000 2821800000 2873600000 2019500000 1572700000 1726100000 3036000000 3182500000 3474100000 4911400000 4054400000 4231500000 + 20947 5 20294 388967;388968;388969;388970;388971;388972;388973;388974;388975;388976;388977;388978;388979;388980;388981;388982;388983;388984;388985;388986;388987;388988;388989;388990;388991;388992;388993;388994;388995;388996;388997;388998;388999;389000;389001;389002;389003 238307;238308;238309;238310;238311;238312;238313;238314;238315;238316;238317;238318;238319;238320;238321;238322;238323;238324;238325;238326;238327;238328;238329;238330;238331;238332;238333;238334;238335;238336;238337;238338;238339;238340;238341;238342;238343;238344;238345;238346;238347;238348;238349;238350;238351;238352;238353;238354;238355;238356;238357;238358;238359;238360;238361;238362 238315 56 VATYDLQPEMSSAELTEK Unmodified 2010.9456 0.94558775 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 1 1 2 2 2 2 2 2 37.22 35.469 2;3 3.6419E-17 17508 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 208.27 207.11 2738500000 167310000 157950000 138920000 723360 2005400 810830 250940000 249240000 243600000 1402100 1536900 0 258910000 258190000 260230000 0 0 0 238690000 261090000 246920000 0 0 0 20948 1487 20295 389004;389005;389006;389007;389008;389009;389010;389011;389012;389013;389014;389015;389016;389017;389018;389019;389020;389021;389022;389023;389024;389025;389026;389027;389028;389029;389030;389031;389032;389033 238363;238364;238365;238366;238367;238368;238369;238370;238371;238372;238373;238374;238375;238376;238377;238378;238379;238380;238381;238382;238383;238384;238385;238386 238363 24 VAVATIGAVLPGDFK Unmodified 1456.829 0.8289655 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 2 2 2 46.361 44.925 2;3 1.4304E-08 22409 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.42 173.57 4846100000 421520000 456230000 382780000 722860 1161100 868500 394040000 320650000 326730000 0 0 0 422510000 344930000 408420000 5502900 0 0 469950000 447960000 442090000 0 0 0 20949 161 20296 389034;389035;389036;389037;389038;389039;389040;389041;389042;389043;389044;389045;389046;389047;389048;389049;389050;389051;389052;389053;389054;389055;389056;389057;389058;389059;389060;389061 238387;238388;238389;238390;238391;238392;238393;238394;238395;238396;238397;238398;238399;238400;238401;238402;238403;238404;238405;238406 238387 20 VAVDSEVTVR Unmodified 1073.5717 0.57168818 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.82 19.276 2 0.00034545 7474 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.11 97.063 535630000 51814000 55315000 45475000 0 0 0 44527000 37175000 39107000 1334500 0 0 37531000 32407000 27586000 0 0 0 53754000 56430000 52476000 0 0 696600 20950 444 20297 389062;389063;389064;389065;389066;389067;389068;389069;389070;389071;389072;389073;389074;389075 238407;238408;238409;238410;238411;238412;238413;238414 238413 6 VAVEAGIADYWYK Unmodified 1483.7347 0.73473076 1299;1423 P27302;P33570 tktA;tktB Transketolase 1;Transketolase 2 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 2 3 3 1 3 3 3 2 2 3 43.914 42.397 2;3 2.0329E-05 19439 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 126.67 122.65 3302200000 197000000 159710000 168360000 0 0 0 415780000 413970000 364700000 0 1059700 0 263080000 277870000 247750000 0 0 0 283890000 262960000 246060000 0 0 0 20951 1299;1423 20298 389076;389077;389078;389079;389080;389081;389082;389083;389084;389085;389086;389087;389088;389089;389090;389091;389092;389093;389094;389095;389096;389097;389098;389099;389100;389101;389102;389103;389104;389105;389106;389107;389108 238415;238416;238417;238418;238419;238420;238421;238422;238423;238424;238425;238426;238427;238428;238429;238430;238431;238432;238433;238434;238435;238436;238437;238438;238439;238440;238441;238442;238443;238444;238445;238446;238447;238448;238449;238450;238451;238452;238453;238454;238455;238456;238457;238458;238459;238460;238461;238462 238459 48 VAVFTLEEHEVAR Unmodified 1498.778 0.77799256 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 28.66 27.431 3 2.4122E-05 9301 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 92.925 91.546 46790000 11882000 9733700 7790600 5203300 5064800 7116000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20952 152 20299 389109;389110;389111;389112;389113;389114 238463;238464;238465 238464 3 VAVFTQGANAEAAK Unmodified 1375.7096 0.70957864 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 2 1 2 1 1 1 1 2 2 2 1 1 1 3 2 2 1 1 1 20.482 20.742 2;3 1.8264E-15 8086 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 201.75 191.97 7146400000 865300000 840240000 755540000 60333000 57123000 63853000 315630000 302680000 301580000 77414000 69178000 63457000 453300000 382560000 374890000 50551000 28487000 34431000 680830000 663420000 565120000 43703000 50441000 46293000 20953 353 20300 389115;389116;389117;389118;389119;389120;389121;389122;389123;389124;389125;389126;389127;389128;389129;389130;389131;389132;389133;389134;389135;389136;389137;389138;389139;389140;389141;389142;389143;389144;389145;389146;389147;389148;389149;389150;389151;389152;389153;389154;389155 238466;238467;238468;238469;238470;238471;238472;238473;238474;238475;238476;238477;238478;238479;238480;238481;238482;238483;238484;238485;238486;238487;238488;238489;238490;238491;238492;238493;238494;238495;238496;238497;238498;238499 238483 32 VAVGAALLSMPVR Unmodified 1282.7431 0.74312738 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.098 42.342 2 5.9757E-11 20483 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 137.98 105.14 129550000 22435000 19605000 16907000 2708600 0 1863300 0 0 0 8656500 8556500 3950000 19928000 15922000 0 0 0 0 0 0 0 0 3538600 5476000 20954 486 20301 389156;389157;389158;389159;389160;389161;389162;389163;389164;389165;389166;389167;389168;389169;389170 238500;238501;238502;238503;238504;238505;238506;238507;238508;238509;238510 238504 11 VAVGLEQNR Unmodified 984.53524 0.53524309 1250 P24554 radA DNA repair protein RadA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 15.653 16.367 2 0.028573 5574 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 60.436 34.877 28324000 6025500 4728200 5084400 3120100 3110200 2403000 0 0 0 801610 0 0 0 0 0 0 0 0 0 0 3051200 0 0 0 20955 1250 20302 389171;389172;389173;389174;389175;389176;389177;389178;389179 238511;238512 238512 2 VAVIGGGNTAVEEALYLSNIASEVHLIHR Unmodified 3031.6091 0.60908332 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 3 2 3 1 3 3 2 2 2 2 2 1 54.16 52.712 3;4;5 3.6641E-31 26073 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 182.41 182.09 2243600000 360500000 353490000 326060000 0 0 0 212040000 243570000 223680000 0 0 0 62453000 234400000 61607000 0 0 0 66624000 62858000 36315000 0 0 0 20956 543 20303 389180;389181;389182;389183;389184;389185;389186;389187;389188;389189;389190;389191;389192;389193;389194;389195;389196;389197;389198;389199;389200;389201;389202;389203;389204;389205 238513;238514;238515;238516;238517;238518;238519;238520;238521;238522 238514 10 VAVLGAAGGIGQALALLLK Unmodified 1734.0767 0.076740764 1642 P61889 mdh Malate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 55.81 54.375 2;3 1.2251E-17 26802 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 163.23 157.22 7981300000 507320000 1508300000 2025900000 18967000 16970000 20614000 116700000 34521000 112030000 0 0 0 482130000 561660000 448590000 0 0 0 267290000 926140000 934150000 0 0 0 20957 1642 20304 389206;389207;389208;389209;389210;389211;389212;389213;389214;389215;389216;389217;389218;389219;389220;389221;389222;389223;389224;389225;389226;389227;389228;389229;389230;389231;389232;389233;389234 238523;238524;238525;238526;238527;238528;238529;238530;238531;238532;238533;238534;238535;238536;238537;238538;238539;238540;238541;238542;238543;238544;238545;238546;238547;238548;238549;238550 238544 27 VAVLGLAQAR Unmodified 996.60801 0.60801411 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.095 27.839 2 2.0463E-06 12814 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 158.36 142.99 572270000 78043000 77097000 72534000 0 0 0 52013000 45817000 44468000 0 0 0 34039000 32013000 35552000 0 0 0 33173000 35651000 31875000 0 0 0 20958 1508 20305 389235;389236;389237;389238;389239;389240;389241;389242;389243;389244;389245;389246 238551;238552;238553;238554;238555;238556;238557;238558;238559;238560;238561;238562 238556 12 VAVLSVTEGEDKPLK Unmodified 1583.877 0.8770379 603 P0AAN3 hypB Hydrogenase isoenzymes nickel incorporation protein HypB yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 25.18 24.166 2;3 5.0626E-07 10184 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 122.64 116.06 844970000 30044000 23945000 28010000 0 0 0 124130000 132300000 90623000 0 0 0 76951000 63675000 63708000 0 0 0 75002000 63978000 72603000 0 0 0 20959 603 20306 389247;389248;389249;389250;389251;389252;389253;389254;389255;389256;389257;389258;389259;389260;389261;389262;389263;389264;389265;389266;389267;389268;389269 238563;238564;238565;238566;238567;238568;238569;238570;238571;238572;238573;238574;238575;238576;238577;238578 238577 12 VAVNATPESAR Unmodified 1113.5778 0.57783619 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.803 13.674 2 9.3638E-08 4027 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 207.29 171.93 4218400000 196890000 187060000 145790000 1537800 0 1255900 593420000 627460000 623570000 0 0 0 393100000 293030000 304370000 0 0 0 300120000 296730000 254080000 0 0 0 20960 257 20307 389270;389271;389272;389273;389274;389275;389276;389277;389278;389279;389280;389281;389282;389283 238579;238580;238581;238582;238583;238584;238585;238586;238587;238588;238589 238581 11 VAVPLLR Unmodified 766.50651 0.50650915 2002 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 2 2 2 1 1 36.919 35.226 2 0.0020458 17346 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.23 76.46 204000000 34905000 29181000 25879000 0 0 0 18766000 18882000 17806000 0 0 0 5558400 12252000 11332000 0 0 0 14277000 7881800 7276800 0 0 0 + 20961 2002 20308 389284;389285;389286;389287;389288;389289;389290;389291;389292;389293;389294;389295;389296;389297;389298;389299;389300;389301;389302;389303;389304 238590;238591;238592;238593;238594;238595;238596;238597;238598 238592 9 VAVTELAHIVDETLAANNLDR Unmodified 2263.1808 0.1808245 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 2 2 2 1 2 2 2 1 1 54.271 52.906 2;3 2.4757E-52 24999 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 297.08 285.81 3577100000 249630000 272420000 211420000 0 2101200 0 279500000 189900000 184780000 3708500 0 0 363070000 315890000 362480000 0 6553800 0 393080000 361080000 371480000 0 3085400 6933700 20962 273 20309 389305;389306;389307;389308;389309;389310;389311;389312;389313;389314;389315;389316;389317;389318;389319;389320;389321;389322;389323;389324;389325;389326;389327;389328;389329;389330 238599;238600;238601;238602;238603;238604;238605;238606;238607;238608;238609;238610;238611;238612;238613 238611 15 VAVTGAGQSPALDVTVHAIGK Unmodified 1990.0847 0.084739267 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 32.974 31.4 2;3 1.6225E-34 14922 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 262.05 258.37 3912600000 247350000 181910000 225780000 1786400 1624200 1871000 436070000 384990000 344310000 1096200 1745100 1681800 342470000 333620000 335100000 0 0 0 353150000 359510000 356080000 0 1226600 1286900 20963 92 20310 389331;389332;389333;389334;389335;389336;389337;389338;389339;389340;389341;389342;389343;389344;389345;389346;389347;389348;389349;389350;389351;389352;389353;389354;389355;389356;389357;389358;389359;389360;389361;389362 238614;238615;238616;238617;238618;238619;238620;238621;238622;238623;238624;238625;238626;238627;238628;238629;238630;238631;238632;238633;238634;238635;238636;238637 238621 24 VAVTGNKR Unmodified 843.49265 0.49265 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 10.363 10.461 2 0.0063104 1825 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 87.284 50.255 128240000 0 0 0 0 0 0 0 0 0 18033000 16925000 13753000 0 0 0 25219000 10069000 7975200 0 0 0 16798000 0 19470000 20964 569 20311 389363;389364;389365;389366;389367;389368;389369;389370 238638;238639 238639 1 VAVVDATGK Unmodified 858.48108 0.48108226 1586 P46837 yhgF Protein YhgF yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.099 14.299 2 0.046596 4458 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 55.112 19.618 96465000 45966000 43130000 0 0 0 0 0 0 0 1507700 1287200 955070 0 0 0 1002200 777850 880320 0 0 0 0 958320 0 20965 1586 20312 389371;389372;389373;389374;389375;389376;389377;389378;389379 238640 238640 1 VAVVDIQSDK Unmodified 1072.5764 0.57643921 116 P05707 srlD Sorbitol-6-phosphate 2-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.671 21.093 2 1.0141E-08 8340 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 182.53 141.1 873070000 60128000 51608000 50096000 0 0 0 134930000 125930000 122340000 0 0 0 56028000 51292000 50484000 0 0 0 53348000 61776000 55113000 0 0 0 20966 116 20313 389380;389381;389382;389383;389384;389385;389386;389387;389388;389389;389390;389391 238641;238642;238643;238644;238645;238646;238647;238648;238649;238650;238651 238644 11 VAVVGAMSGPVAQYGDQEFTGAEQAVADINAK Unmodified 3192.5397 0.53974271 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 51.556 50.339 3 2.1429E-25 24474 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 174.06 173.84 95990000 34778000 26633000 28837000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5742200 0 0 0 0 0 20967 774 20314 389392;389393;389394;389395 238652;238653;238654 238654 3 VAVVLGESEVANGTAVVK Unmodified 1740.9622 0.96216452 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 35.031 33.574 2 1.4258E-13 16073 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 143.42 136.99 94539000 11009000 6140400 5122800 0 0 0 6780500 8444900 10667000 0 0 0 6209900 6026600 5927200 0 0 0 9927600 11150000 7133400 0 0 0 20968 1634 20315 389396;389397;389398;389399;389400;389401;389402;389403;389404;389405;389406;389407 238655;238656;238657;238658;238659;238660;238661;238662 238656 6 VAWCTGGGQSFIDSAAR Unmodified 1781.8155 0.81551705 959 P0AFP6 ybgI Putative GTP cyclohydrolase 1 type 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 1 1 1 1 2 37.454 35.552 2 4.3113E-31 17138 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 234.63 233.9 1737500000 264040000 240840000 227650000 2403400 2035000 2165700 133320000 127050000 123550000 15496000 15267000 14484000 78748000 72668000 74774000 0 0 0 94564000 95933000 94808000 22378000 18648000 16675000 20969 959 20316 389408;389409;389410;389411;389412;389413;389414;389415;389416;389417;389418;389419;389420;389421;389422;389423;389424;389425;389426;389427;389428;389429;389430;389431;389432;389433 238663;238664;238665;238666;238667;238668;238669;238670;238671;238672;238673;238674;238675;238676;238677 238672 15 VAYDTAHYCLLDTLGCGLEALEYPACK Unmodified 3102.4137 0.41367926 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 54.521 53.115 3;4 8.2528E-08 26182 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 106.12 105.16 747230000 264840000 247560000 234830000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20970 1888 20317 389434;389435;389436;389437;389438;389439 238678;238679;238680;238681;238682 238680 5 VAYIDGGILQEIHIER Unmodified 1824.9734 0.9733979 526 P0A9J0 rng Ribonuclease G yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.739 44.393 3 7.8892E-05 21641 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 78.326 74.553 61328000 11289000 11432000 9465000 0 0 0 0 3181300 0 0 0 1247100 3781100 3723200 0 1519900 0 0 6683000 6342300 2665100 0 0 0 20971 526 20318 389440;389441;389442;389443;389444;389445;389446;389447;389448;389449;389450 238683;238684 238684 2 VAYLFLR Unmodified 880.51707 0.51707383 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.728 37.055 2 0.0015509 17994 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128 74.481 104800000 9989200 8055600 8052700 0 0 0 11324000 9450200 10884000 0 0 0 5661500 5939200 5971300 0 0 0 8172000 10637000 10664000 0 0 0 20972 1353 20319 389451;389452;389453;389454;389455;389456;389457;389458;389459;389460;389461;389462 238685;238686;238687 238685 3 VCASVSYQQMHGFSAEQLR Unmodified 2197.0045 0.004456811 51 P00926 dsdA D-serine dehydratase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.08 28.724 3 5.6601E-14 13452 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 136.26 134.75 313260000 16012000 10469000 14062000 0 0 0 32594000 29893000 33757000 0 0 0 18858000 22276000 17311000 0 0 0 35037000 43858000 39134000 0 0 0 20973 51 20320 389463;389464;389465;389466;389467;389468;389469;389470;389471;389472;389473;389474 238688;238689;238690;238691;238692;238693;238694;238695 238688 8 VCAYVDSVELATGK Unmodified 1510.7337 0.73374448 186 P08373 murB UDP-N-acetylenolpyruvoylglucosamine reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.244 31.804 2 0.00029979 14542 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 79.889 76.126 310160000 32295000 30128000 21618000 0 0 0 23530000 24090000 24920000 0 0 0 25245000 24375000 21483000 0 0 0 28426000 26196000 27853000 0 0 0 20974 186 20321 389475;389476;389477;389478;389479;389480;389481;389482;389483;389484;389485;389486 238696 238696 1 VCDELVACFDNPDLTFSAR Unmodified 2227.9878 0.98780369 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.351 50.103 2 9.3405E-37 24378 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 234.82 224.77 176790000 18230000 15976000 14285000 0 0 0 15305000 13525000 13335000 0 0 0 12649000 11693000 12620000 0 0 0 18164000 16040000 14965000 0 0 0 20975 289 20322 389487;389488;389489;389490;389491;389492;389493;389494;389495;389496;389497;389498 238697;238698;238699;238700;238701;238702 238699 6 VCEFWADR Unmodified 1081.4651 0.46511462 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.294 28.774 2 0.00023486 12821 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 150.84 139.96 3275800000 8790100 8712200 5606200 0 0 0 312870000 302550000 263610000 1237300 1194500 1380400 363930000 321490000 304880000 754380 0 0 458050000 462400000 451240000 2785800 2615500 1707800 20976 1324 20323 389499;389500;389501;389502;389503;389504;389505;389506;389507;389508;389509;389510;389511;389512;389513;389514;389515;389516;389517 238703;238704;238705;238706;238707;238708;238709;238710;238711;238712 238711 10 VCGFQFHPESILTTQGAR Unmodified 2046.9945 0.99454405 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 39.645 37.953 3 2.7484E-07 18381 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.98 103.87 180820000 53192000 59453000 58211000 3033800 2654500 2529800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1063000 0 682190 20977 48 20324 389518;389519;389520;389521;389522;389523;389524;389525 238713;238714;238715 238714 3 VCGQVDR Unmodified 832.38614 0.38613602 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.04 10.874 2 0.010727 2181 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 86.512 76.086 187340000 7062500 0 0 0 0 0 8167600 6121800 6183400 0 0 0 23991000 19960000 20206000 0 0 0 34309000 31268000 30070000 0 0 0 20978 1788 20325 389526;389527;389528;389529;389530;389531;389532;389533;389534;389535 238716;238717;238718;238719 238716 3 VCGTPIVATK Unmodified 1044.5638 0.56376603 112 P05523 mutM Formamidopyrimidine-DNA glycosylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 16.467 17.078 2 0.001 4533 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 87.308 78.445 97194000 0 0 0 0 0 0 6425100 6140200 0 0 0 0 11777000 8822600 4638400 12139000 7454100 8722900 16859000 14215000 0 0 0 0 20979 112 20326 389536;389537;389538;389539;389540;389541;389542;389543;389544;389545 238720;238721;238722 238721 1 VCHEVGLDAGEVVIGSDIETLSDDELANLAQR Unmodified 3423.6464 0.64639262 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.223 53.278 3 1.6456E-26 24882 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 179.86 174.43 349230000 0 0 0 0 0 0 0 0 0 0 0 0 78272000 86350000 91846000 8047800 9184200 9109200 19987000 23510000 18684000 0 0 4240100 20980 647 20327 389546;389547;389548;389549;389550;389551;389552;389553;389554;389555 238723;238724;238725;238726;238727;238728 238728 6 VCLELGGK Unmodified 874.45824 0.45823833 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.324 21.99 2 0.0016218 8989 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.32 57.293 5043900000 1221300000 1164700000 1015700000 0 0 0 180190000 154030000 172560000 1573800 0 0 147310000 0 0 0 0 0 382930000 331610000 271400000 0 0 641200 20981 1264 20328 389556;389557;389558;389559;389560;389561;389562;389563;389564;389565;389566;389567 238729;238730;238731;238732;238733;238734;238735;238736;238737 238735 9 VCLGAEK Unmodified 775.38982 0.38982441 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.301 12.971 2 0.0033765 3657 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 108.24 66.736 3361500000 204230000 162930000 188760000 4723200 5193800 6833900 385400000 379820000 378520000 6730200 5839100 7143500 280950000 273740000 289250000 0 2882300 0 259080000 256970000 249990000 3597800 4464400 4497500 20982 1184 20329 389568;389569;389570;389571;389572;389573;389574;389575;389576;389577;389578;389579;389580;389581;389582;389583;389584;389585;389586;389587;389588;389589 238738;238739;238740 238738 3 VCNVEFQPLR Unmodified 1260.6285 0.62849155 961 P0AFR2 dauA C4-dicarboxylic acid transporter DauA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 30.509 28.432 2 0.0030747 10852 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 81.296 78.29 14292000 0 0 0 0 0 0 0 0 0 4184700 3104900 3710300 0 0 0 0 0 0 0 0 0 1824300 1467900 0 20983 961 20330 389590;389591;389592;389593;389594 238741;238742 238742 0 VCNYVNWIQQTIAAN Unmodified 1792.8567 0.85665359 5 CON__P00761 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 55.079 53.662 2 2.4315E-11 21536 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 161.76 155.79 168730000 0 0 0 22290000 16751000 20369000 0 0 0 18673000 15576000 17555000 0 4188100 2822900 0 0 0 0 0 0 19867000 16973000 13664000 + 20984 5 20331 389595;389596;389597;389598;389599;389600;389601;389602;389603;389604;389605 238743;238744;238745;238746;238747;238748;238749;238750;238751 238746 9 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR Unmodified 3940.9193 0.91932001 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 3 2 2 1 1 1 2 2 1 1 1 1 3 3 3 55.479 54.241 3;4 6.4369E-35 20961 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 200.85 200.49 4531000000 12469000 12789000 0 0 0 0 8772400 12205000 9005300 273160000 291910000 293760000 17324000 13898000 13830000 729550000 1103000000 684760000 20804000 20738000 17529000 307490000 367860000 320170000 20985 463 20332 389606;389607;389608;389609;389610;389611;389612;389613;389614;389615;389616;389617;389618;389619;389620;389621;389622;389623;389624;389625;389626;389627;389628;389629;389630;389631;389632;389633;389634;389635;389636;389637 238752;238753;238754;238755;238756;238757;238758;238759;238760;238761;238762;238763;238764;238765;238766;238767;238768 238756 16 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK Unmodified 4069.0143 0.014283026 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 2 3 2 3 3 3 3 3 4 54.585 53.559 3;4;5 3.1509E-47 21581 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 208.99 208.98 15469000000 26752000 0 23056000 0 0 9503300 0 0 0 446330000 321290000 326590000 14887000 0 0 3428400000 4581200000 4062500000 0 0 0 690930000 732920000 804960000 20986 463 20333 389638;389639;389640;389641;389642;389643;389644;389645;389646;389647;389648;389649;389650;389651;389652;389653;389654;389655;389656;389657;389658;389659;389660;389661;389662;389663;389664;389665;389666;389667;389668;389669;389670 238769;238770;238771;238772;238773;238774;238775;238776;238777;238778;238779;238780;238781;238782;238783;238784;238785;238786;238787;238788;238789;238790;238791;238792 238779 24 VCQVTGK Unmodified 790.40072 0.40072345 356 P0A7M2 rpmB 50S ribosomal protein L28 yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9.3364 9.9303 2 0.0014353 2014 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 130.05 52.331 4048500000 703410000 729850000 644880000 10537000 15522000 9689100 22122000 19130000 19017000 39858000 36927000 40134000 87917000 97190000 57594000 39373000 37412000 37366000 446170000 354600000 480890000 43496000 39897000 35530000 20987 356 20334 389671;389672;389673;389674;389675;389676;389677;389678;389679;389680;389681;389682;389683;389684;389685;389686;389687;389688;389689;389690;389691;389692;389693;389694 238793;238794;238795;238796;238797;238798;238799;238800;238801;238802;238803;238804;238805;238806;238807;238808;238809;238810;238811;238812;238813 238794 20 VCTLALALEDVGPQAVQDK Unmodified 2026.0405 0.040491191 1907 P77454 glsA1 Glutaminase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 1 2 2 2 1 1 1 1 1 49.132 47.673 2;3 9.4488E-56 23459 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 286.26 280.78 749480000 114910000 102590000 51713000 0 0 0 147320000 156120000 144740000 3470800 3258100 0 0 0 0 0 0 0 10334000 6582300 8449200 0 0 0 20988 1907 20335 389695;389696;389697;389698;389699;389700;389701;389702;389703;389704;389705;389706;389707;389708;389709;389710 238814;238815;238816;238817;238818;238819;238820;238821 238818 8 VCVSPGIGFGDYGDTHVR Unmodified 1934.8945 0.89449566 1905 P77434 alaC Glutamate-pyruvate aminotransferase AlaC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.532 31.927 3 6.9233E-07 15251 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 101.67 100.64 272660000 40896000 42661000 40376000 0 0 1418800 15100000 20722000 16469000 5160600 0 2889700 9355100 9793900 7663800 0 0 0 17864000 20743000 19475000 0 2070700 0 20989 1905 20336 389711;389712;389713;389714;389715;389716;389717;389718;389719;389720;389721;389722;389723;389724;389725;389726 238822;238823;238824 238823 3 VCVTAQHR Unmodified 969.48143 0.48143338 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.349 11.165 2 0.017499 2424 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 66.799 61.319 160840000 12705000 9718700 9370300 0 0 0 15382000 14880000 14631000 0 0 0 14098000 11354000 11075000 0 0 0 17442000 16019000 14166000 0 0 0 20990 1306 20337 389727;389728;389729;389730;389731;389732;389733;389734;389735;389736;389737;389738 238825 238825 1 VCVVNADDALTMPIR Unmodified 1672.8277 0.82766164 1098 P14900 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 41.923 40.196 2 4.9171E-06 19593 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.1 107.47 249830000 28378000 27014000 21414000 0 0 0 24266000 22693000 20543000 0 0 0 21104000 16745000 0 0 0 0 23294000 21586000 22793000 0 0 0 20991 1098 20338 389739;389740;389741;389742;389743;389744;389745;389746;389747;389748;389749 238826;238827;238828 238828 0 VCYNGEWYNTR Unmodified 1460.6143 0.61429805 609 P0AAS0 ylaC Inner membrane protein YlaC yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.562 25.597 2 0.0020659 9358 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 74.162 74.039 70521000 0 0 0 0 0 0 3760700 0 0 0 0 2706300 6204800 6311200 7186900 1557700 986540 1325400 8436200 8547800 10367000 4206000 3505700 5418300 20992 609 20339 389750;389751;389752;389753;389754;389755;389756;389757;389758;389759;389760;389761;389762;389763 238829;238830 238829 2 VDAAIEESVIAHMNELLIALSDDAELSR Unmodified 3023.5121 0.51213097 1670 P64455 ydcY Uncharacterized protein YdcY yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 55.842 54.368 3 3.1691E-11 26071 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 126.36 124.22 165690000 0 21761000 0 0 0 0 11342000 11160000 0 0 0 0 23156000 22600000 20326000 0 0 0 13783000 23998000 17567000 0 0 0 20993 1670 20340 389764;389765;389766;389767;389768;389769;389770;389771;389772 238831;238832;238833 238833 3 VDADTLK Unmodified 760.39668 0.39668393 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.825 13.516 2 0.015892 4033 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 81.297 1.0029 881490000 140570000 4412000 0 0 4932500 3629300 5897600 550170000 0 18087000 14353000 16517000 0 68123000 54794000 0 0 0 0 0 0 0 0 0 20994 64 20341 389773;389774;389775;389776;389777;389778;389779;389780;389781;389782;389783 238834;238835 238835 2 VDADVEYQAAASEWR Unmodified 1708.7693 0.76927837 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 2 1 1 1 1 2 36.146 34.613 2 4.2892E-20 16490 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 255.3 246.35 360890000 29029000 33381000 26264000 0 0 0 33136000 32826000 30293000 0 0 0 28211000 22601000 24033000 0 0 0 30412000 32354000 38351000 0 0 0 20995 1503 20342 389784;389785;389786;389787;389788;389789;389790;389791;389792;389793;389794;389795;389796;389797;389798 238836;238837;238838;238839;238840;238841;238842;238843;238844;238845;238846;238847;238848 238841 12 VDAEGMK Unmodified 748.34254 0.34253987 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.194 12.038 2 0.0033765 3128 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 108.24 100.82 753380000 94037000 88316000 88736000 0 0 0 0 40843000 44607000 0 0 0 60733000 56726000 63671000 0 0 0 75933000 69314000 70466000 0 0 0 20996 638 20343 389799;389800;389801;389802;389803;389804;389805;389806;389807;389808;389809 238849;238850;238851;238852 238849 4 VDAGFAITK Unmodified 920.49673 0.49673232 1038 P0C0L2 osmC Peroxiredoxin OsmC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 1 2 2 24.497 23.545 1;2 0.00086933 10337 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 99.136 59.032 3575400000 568440000 549120000 485080000 0 0 0 444410000 463360000 481640000 0 0 0 90760000 72692000 65073000 0 0 0 124220000 118820000 111740000 0 0 0 20997 1038 20344 389810;389811;389812;389813;389814;389815;389816;389817;389818;389819;389820;389821;389822;389823;389824;389825;389826;389827;389828;389829;389830;389831 238853;238854;238855;238856;238857;238858;238859;238860;238861;238862;238863;238864;238865;238866 238859 10 VDAGSWYSK Unmodified 1011.4662 0.46616048 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.266 21.952 2 0.00095424 9191 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 96.948 93.252 1235200000 20064000 18573000 18037000 0 0 0 82714000 68294000 75571000 0 0 0 111660000 97852000 99064000 0 0 0 209520000 219840000 214020000 0 0 0 20998 1065 20345 389832;389833;389834;389835;389836;389837;389838;389839;389840;389841;389842;389843 238867;238868;238869;238870;238871;238872;238873;238874;238875 238871 9 VDAHDIFSHSTTK Unmodified 1456.6947 0.69465686 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 3 1 2 2 2 2 2 2 2 2 1 1 3 3 3 3 2 2 1 1 1 18.323 18.65 2;3;4 3.7837E-09 5291 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 161.87 157.52 562720000 42364000 35626000 58765000 0 1243100 3519200 16147000 16018000 10546000 9758400 9528400 6671600 12871000 6063900 6198500 62670000 109540000 114060000 11290000 12262000 9094400 3052400 2871300 2558000 20999 515 20346 389844;389845;389846;389847;389848;389849;389850;389851;389852;389853;389854;389855;389856;389857;389858;389859;389860;389861;389862;389863;389864;389865;389866;389867;389868;389869;389870;389871;389872;389873;389874;389875;389876;389877;389878;389879;389880;389881;389882;389883;389884;389885;389886;389887;389888 238876;238877;238878;238879;238880;238881;238882;238883;238884 238876 9 VDAIMPTFIETVR Unmodified 1490.7803 0.78030075 1873 P76561 ypfH Esterase YpfH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.894 48.474 2 6.1642E-06 19760 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 126.19 119.17 335990000 39197000 27667000 30343000 3799200 3381900 3005300 30330000 29581000 29899000 8674000 10693000 9321300 18275000 12527000 14542000 0 0 0 21211000 18995000 18272000 2354500 1670800 2248100 21000 1873 20347 389889;389890;389891;389892;389893;389894;389895;389896;389897;389898;389899;389900;389901;389902;389903;389904;389905;389906;389907;389908;389909 238885;238886;238887;238888;238889;238890;238891 238885 6 VDALAEDPR Unmodified 984.48762 0.4876242 667 P0ABK9 nrfA Cytochrome c-552 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 16.389 17.168 2 0.0039101 5787 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 79.906 70.319 94608000 0 2236000 0 0 0 0 10200000 9932000 9742900 0 0 0 9996600 11307000 8626000 0 0 0 10584000 10939000 11044000 0 0 0 21001 667 20348 389910;389911;389912;389913;389914;389915;389916;389917;389918;389919 238892;238893;238894;238895;238896 238894 5 VDALALITHR Unmodified 1107.64 0.64004252 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 1 1 1 1 1 2 2 2 34.684 33.081 2;3 7.5816E-07 12694 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 196.88 193.63 2148200000 127160000 111590000 127820000 11261000 13500000 13653000 126850000 130870000 130670000 38486000 38183000 33965000 68198000 75435000 75842000 165390000 22829000 33312000 108560000 120030000 116030000 174520000 146270000 137740000 21002 1633 20349 389920;389921;389922;389923;389924;389925;389926;389927;389928;389929;389930;389931;389932;389933;389934;389935;389936;389937;389938;389939;389940;389941;389942;389943;389944;389945;389946;389947;389948;389949;389950;389951;389952;389953;389954;389955;389956;389957 238897;238898;238899;238900;238901;238902;238903;238904;238905;238906;238907;238908;238909;238910;238911;238912;238913;238914;238915;238916;238917;238918;238919;238920;238921;238922;238923;238924;238925 238908 29 VDALMDEINFMK Unmodified 1424.668 0.6679731 14 CON__P13647 no no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 50.383 48.945 2 5.7261E-05 19519 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 105.86 94.712 51883000 0 0 0 2231200 2630700 1516700 0 0 0 9026500 9883000 7083400 0 0 0 0 0 0 0 0 0 7234100 6086700 6190900 + 21003 14 20350 389958;389959;389960;389961;389962;389963;389964;389965;389966 238926;238927;238928;238929;238930;238931;238932 238928 7 VDALVAAGVDVLLIDSSHGHSEGVLQR Unmodified 2756.4457 0.44570639 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 2 1 1 2 3 2 1 2 3 2 2 2 3 1 1 1 50.669 49.261 3;4 1.2745E-32 24169 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 202.74 201.92 5682900000 431080000 361020000 313460000 1865700 1856200 0 357350000 383770000 358430000 0 0 3068900 541230000 493410000 586850000 0 0 0 675880000 616820000 546240000 3731500 2913900 3940400 21004 788 20351 389967;389968;389969;389970;389971;389972;389973;389974;389975;389976;389977;389978;389979;389980;389981;389982;389983;389984;389985;389986;389987;389988;389989;389990;389991;389992;389993;389994;389995;389996;389997;389998;389999;390000 238933;238934;238935;238936;238937;238938;238939;238940;238941;238942;238943;238944;238945;238946;238947;238948;238949;238950;238951;238952;238953;238954;238955;238956;238957;238958;238959;238960;238961;238962;238963;238964;238965;238966;238967;238968;238969;238970 238936 37 VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLK Unmodified 4185.123 0.12298185 399 P0A858 tpiA Triosephosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 2 2 3 3 3 3 55.624 54.147 3;4;5 2.0689E-20 25757 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 131.83 130.98 3042200000 330970000 322930000 254620000 0 2984800 0 359760000 333910000 321000000 0 0 0 129130000 144930000 190220000 0 0 0 201330000 203570000 246810000 0 0 0 21005 399 20352 390001;390002;390003;390004;390005;390006;390007;390008;390009;390010;390011;390012;390013;390014;390015;390016;390017;390018;390019;390020;390021;390022;390023;390024;390025;390026;390027;390028;390029;390030;390031;390032;390033;390034;390035 238971;238972;238973;238974;238975;238976;238977;238978;238979;238980;238981;238982;238983;238984;238985;238986;238987;238988;238989 238987 19 VDAPSGTALAMGEAIAHALDK Unmodified 2037.0201 0.0200901 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.048 51.608 3 3.5941E-10 25737 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 112.58 111.68 249400000 24177000 22912000 18929000 0 0 0 24856000 21518000 23951000 0 0 0 21248000 17253000 17913000 0 0 0 18553000 15279000 22813000 0 0 0 21006 85 20353 390036;390037;390038;390039;390040;390041;390042;390043;390044;390045;390046;390047 238990;238991;238992;238993;238994 238990 5 VDAVWQR Unmodified 872.45045 0.45045083 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 20.447 21 2 7.7843E-05 8338 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 129.96 49.584 398820000 90984000 89302000 84453000 0 0 0 0 0 0 0 0 0 33854000 28544000 25453000 0 0 0 46226000 0 0 0 0 0 21007 1233 20354 390048;390049;390050;390051;390052;390053;390054;390055 238995;238996;238997;238998;238999;239000;239001;239002 238996 8 VDAYAGDPILTLMER Unmodified 1662.8287 0.8287075 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 1 2 1 2 53.521 52.162 2;3 2.1728E-08 25513 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 166.04 157.04 747950000 94515000 78290000 72477000 0 0 0 51252000 57217000 52674000 0 0 0 42788000 49186000 47131000 0 750340 0 73195000 55717000 72756000 0 0 0 21008 91 20355 390056;390057;390058;390059;390060;390061;390062;390063;390064;390065;390066;390067;390068;390069;390070;390071;390072;390073;390074;390075;390076;390077 239003;239004;239005;239006;239007;239008;239009;239010;239011;239012;239013 239006 11 VDCHHWLILHGR Unmodified 1541.7674 0.76738507 637 P0AB83 nth Endonuclease III yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 19.337 19.356 3;4 0.00026642 5784 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 83.045 80.287 90017000 0 0 0 0 0 0 5598700 0 0 0 0 0 0 0 0 34397000 25610000 24412000 0 0 0 0 0 0 21009 637 20356 390078;390079;390080;390081;390082;390083;390084 239014;239015;239016;239017;239018;239019;239020 239015 7 VDDETLALWDAPVHTPALNWGK Unmodified 2447.2121 0.21212463 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.135 50.887 2;3 1.5216E-88 25130 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 398.23 358.48 4200600000 125390000 126160000 127070000 0 0 0 523670000 565210000 580650000 0 0 0 360630000 390460000 413540000 0 0 0 343790000 333990000 310050000 0 0 0 21010 1806 20357 390085;390086;390087;390088;390089;390090;390091;390092;390093;390094;390095;390096;390097;390098;390099;390100;390101;390102;390103;390104;390105;390106;390107;390108 239021;239022;239023;239024;239025;239026;239027;239028;239029;239030;239031;239032;239033;239034;239035;239036;239037;239038;239039;239040 239024 20 VDDGGTLDVR Unmodified 1045.504 0.50400254 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 17.729 18.466 2 0.0002603 6543 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 115.71 98.349 351230000 19644000 15719000 15744000 0 0 0 0 0 0 0 0 0 76009000 71567000 75956000 0 0 0 26141000 27006000 23442000 0 0 0 21011 1513 20358 390109;390110;390111;390112;390113;390114;390115;390116;390117 239041;239042;239043;239044;239045 239044 4 VDDIELSLSK Unmodified 1117.5867 0.58666954 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 32.249 30.852 2 0.00028301 13966 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 113.62 93.102 192270000 0 24116000 25237000 0 0 0 19923000 21133000 20131000 0 0 0 19048000 14289000 0 0 0 0 25735000 22655000 0 0 0 0 21012 491 20359 390118;390119;390120;390121;390122;390123;390124;390125;390126 239046;239047;239048;239049;239050 239050 3 VDDKVPLFAVVSR Unmodified 1443.8086 0.80856441 282 P0A6U8 glgA Glycogen synthase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 39.193 37.368 3 4.9185E-06 18481 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.32 115.84 77421000 4540500 3644000 3933700 1580400 1185700 1316600 18748000 14797000 15106000 0 2976500 2269100 3363400 0 3960500 0 0 0 0 0 0 0 0 0 21013 282 20360 390127;390128;390129;390130;390131;390132;390133;390134;390135;390136;390137;390138;390139 239051;239052;239053 239052 3 VDDLAVDLVER Unmodified 1242.6456 0.6455814 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 3 4 5 1 1 2 3 2 3 3 2 2 2 40.414 38.603 2;3 1.4012E-05 18552 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 142.83 124.39 26908000000 1175200000 1104000000 1057700000 15543000 14991000 13428000 3690300000 3335200000 3280800000 29955000 32204000 31284000 2566700000 2321700000 2287500000 0 0 0 1956900000 1968900000 2004200000 21140000 0 0 21014 212 20361 390140;390141;390142;390143;390144;390145;390146;390147;390148;390149;390150;390151;390152;390153;390154;390155;390156;390157;390158;390159;390160;390161;390162;390163;390164;390165;390166;390167;390168;390169;390170;390171;390172;390173;390174;390175;390176;390177;390178;390179;390180;390181;390182;390183;390184 239054;239055;239056;239057;239058;239059;239060;239061;239062;239063;239064;239065;239066;239067;239068;239069;239070;239071;239072;239073;239074;239075;239076;239077;239078;239079;239080;239081;239082;239083;239084;239085;239086;239087;239088 239071 29 VDDLDIHAYR Unmodified 1215.5884 0.58840088 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.775 22.126 3 0.0013628 9630 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 75.652 72.033 766390000 31643000 34852000 28871000 0 0 0 71039000 64096000 69245000 7941800 7020300 4666400 67875000 55060000 57028000 0 0 0 89606000 90250000 84508000 0 2689700 0 21015 1854 20362 390185;390186;390187;390188;390189;390190;390191;390192;390193;390194;390195;390196;390197;390198;390199;390200 239089;239090;239091;239092;239093;239094;239095 239090 7 VDDVLNVSGHR Unmodified 1209.6102 0.61019895 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 17.826 18.479 2;3 1.8978E-05 6727 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.98 128.35 2785000000 846720000 844270000 794050000 3503800 0 4794700 77494000 65671000 56422000 0 0 0 17617000 14136000 15833000 0 0 0 21183000 23309000 0 0 0 0 21016 1305 20363 390201;390202;390203;390204;390205;390206;390207;390208;390209;390210;390211;390212;390213;390214;390215;390216 239096;239097;239098;239099;239100;239101;239102;239103;239104;239105 239101 7 VDDYIIK Unmodified 864.45928 0.45928418 446 P0A8M6 yeeX UPF0265 protein YeeX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.307 22.552 2 0.0092255 10007 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.029 65.792 2953200000 278660000 237810000 237520000 0 0 0 307500000 318390000 322600000 13093000 12509000 9739400 183960000 182860000 198920000 3042700 2780500 0 203830000 217460000 222560000 0 0 0 21017 446 20364 390217;390218;390219;390220;390221;390222;390223;390224;390225;390226;390227;390228;390229;390230;390231;390232;390233;390234 239106;239107;239108;239109;239110;239111;239112;239113;239114;239115;239116;239117;239118;239119 239108 14 VDEAGFEAAMEEQR Unmodified 1580.6777 0.67768617 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 33 31.505 2;3 1.2365E-26 14938 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 239.16 231.44 1016600000 78300000 80457000 76731000 0 870980 0 93424000 86109000 80354000 0 2077600 0 86390000 82817000 75354000 0 0 0 97292000 93503000 82101000 0 0 855030 21018 59 20365 390235;390236;390237;390238;390239;390240;390241;390242;390243;390244;390245;390246;390247;390248;390249;390250;390251;390252;390253;390254;390255;390256;390257;390258;390259;390260;390261 239120;239121;239122;239123;239124;239125;239126;239127;239128;239129;239130;239131;239132;239133;239134;239135 239123 16 VDEAGFEAAMEEQRR Unmodified 1736.7788 0.7787972 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.145 25.998 3 0.15287 11815 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 26.148 24.447 69651000 5951300 7293300 5419600 0 0 0 0 4483000 4945500 0 0 893570 5769400 6330900 5414100 0 0 0 8643100 8076400 6430400 0 0 0 21019 59 20366 390262;390263;390264;390265;390266;390267;390268;390269;390270;390271;390272;390273 239136 239136 0 VDEIATDVDK Unmodified 1103.5346 0.53463397 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 17.715 18.402 2 3.629E-06 6650 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 156.92 148.05 3627900000 1194200000 1120100000 971260000 805630 624910 0 14522000 11833000 10223000 0 0 0 25610000 24383000 0 0 0 0 92994000 83633000 77767000 0 0 0 21020 318 20367 390274;390275;390276;390277;390278;390279;390280;390281;390282;390283;390284;390285;390286 239137;239138;239139 239139 2 VDEIATDVDKTPHAWYFQQAGNGIFAR Unmodified 3048.473 0.47298377 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 43.589 42.075 4 1.6455E-05 20453 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 76.152 74.069 212490000 66047000 68334000 57864000 0 0 0 0 0 0 0 0 3830600 0 0 0 0 0 0 5923400 4741300 5748500 0 0 0 21021 318 20368 390287;390288;390289;390290;390291;390292;390293 239140;239141;239142 239141 3 VDEMVTVR Unmodified 947.47462 0.47461667 279 P0A6T5 folE GTP cyclohydrolase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 19.116 19.374 2 0.00027829 7586 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.33 92.886 485830000 0 0 79130000 0 0 0 57591000 66470000 61401000 1950400 2015200 2030500 0 57792000 0 0 0 0 81797000 75654000 0 0 0 0 21022 279 20369 390294;390295;390296;390297;390298;390299;390300;390301;390302;390303 239143;239144;239145;239146 239144 3 VDENTPMEETASALAHAVQSGK Unmodified 2284.0641 0.064139759 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 44.75 43.228 3 2.7063E-10 21445 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 123.14 123.13 407250000 84352000 91937000 73038000 799630 0 0 30695000 29994000 24454000 0 0 0 11312000 10744000 11615000 0 0 0 12094000 15371000 10840000 0 0 0 21023 1958 20370 390304;390305;390306;390307;390308;390309;390310;390311;390312;390313;390314;390315;390316 239147;239148;239149;239150;239151 239148 4 VDEPLNVEGK Unmodified 1098.5557 0.55570376 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.119 20.356 2 0.00051998 7639 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 111.61 104.71 1090100000 70876000 59580000 54113000 4932100 4388800 5491600 123730000 120140000 110970000 20514000 21058000 19218000 59507000 53514000 50372000 6200700 4067400 4428100 86984000 89486000 85735000 13933000 9938900 10924000 21024 1052 20371 390317;390318;390319;390320;390321;390322;390323;390324;390325;390326;390327;390328;390329;390330;390331;390332;390333;390334;390335;390336;390337;390338;390339;390340 239152;239153;239154;239155;239156;239157;239158;239159;239160;239161;239162;239163;239164;239165;239166;239167;239168;239169 239167 15 VDFDADK Unmodified 808.3603 0.36029842 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.957 15.55 2 0.0055591 5150 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 99.139 99.139 1490400000 198120000 201370000 190430000 1509200 1105100 1977900 82311000 94864000 83665000 0 3711200 3049400 90474000 82359000 67131000 0 1863100 1967200 135620000 122600000 119410000 2797000 1897900 2134200 21025 353 20372 390341;390342;390343;390344;390345;390346;390347;390348;390349;390350;390351;390352;390353;390354;390355;390356;390357;390358;390359;390360;390361;390362 239170;239171;239172;239173;239174;239175;239176;239177;239178;239179;239180;239181 239174 10 VDFDADKLK Unmodified 1049.5393 0.53932542 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 20.029 20.272 2;3 0.00037034 8184 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.31 94.011 4251600000 527620000 462260000 477720000 8750800 8266200 7661200 226350000 201470000 210910000 23388000 20031000 18595000 248380000 218970000 215340000 12920000 10615000 12677000 449800000 413860000 433890000 15980000 13077000 13032000 21026 353 20373 390363;390364;390365;390366;390367;390368;390369;390370;390371;390372;390373;390374;390375;390376;390377;390378;390379;390380;390381;390382;390383;390384;390385;390386;390387;390388;390389;390390;390391;390392;390393;390394;390395;390396;390397;390398;390399;390400;390401;390402;390403;390404;390405;390406;390407;390408;390409;390410 239182;239183;239184;239185;239186;239187;239188;239189;239190;239191;239192;239193;239194;239195;239196;239197;239198;239199;239200;239201;239202;239203;239204;239205;239206;239207;239208;239209;239210;239211;239212;239213 239187 32 VDFDADKLKENLEALLVALK Unmodified 2243.2413 0.24129949 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 2 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 55.177 53.946 3;4 1.2773E-07 20856 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 109.65 105.65 842310000 101500000 95210000 98990000 0 8086200 0 34289000 16225000 27413000 15763000 13036000 14898000 41171000 40872000 40780000 19206000 38941000 44553000 64215000 65211000 59498000 0 2460800 0 21027 353 20374 390411;390412;390413;390414;390415;390416;390417;390418;390419;390420;390421;390422;390423;390424;390425;390426;390427;390428;390429;390430;390431;390432;390433;390434;390435;390436;390437;390438;390439;390440;390441;390442;390443;390444;390445;390446;390447;390448 239214;239215;239216;239217;239218;239219;239220 239215 7 VDFDKDFFGK Unmodified 1216.5764 0.57643921 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.92 33.464 2;3 0.00023908 15805 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 83.862 73.11 1727000000 217140000 197760000 194090000 0 0 0 117970000 119300000 124030000 0 0 0 88935000 87426000 80260000 0 0 0 170150000 178310000 151580000 0 0 0 21028 444 20375 390449;390450;390451;390452;390453;390454;390455;390456;390457;390458;390459;390460;390461;390462;390463;390464;390465;390466;390467;390468;390469;390470;390471;390472 239221;239222;239223;239224;239225;239226;239227;239228;239229;239230;239231;239232;239233;239234;239235;239236;239237;239238;239239;239240 239235 18 VDFFTMVR Unmodified 1013.5004 0.50043749 1125 P16685 phnG Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 45.631 44.301 2 0.0010066 21631 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 113.89 109.95 37317000 0 0 0 0 0 0 0 0 0 0 0 0 4807700 2567300 2924800 0 0 0 9043200 8414400 9559900 0 0 0 21029 1125 20376 390473;390474;390475;390476;390477;390478 239241;239242;239243;239244 239241 4 VDFSKFGEIEEVELGR Unmodified 1852.9207 0.92069363 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.199 44.499 3 1.3171E-10 15978 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 149.3 147.47 53261000 0 0 0 13528000 15719000 11111000 0 0 2259300 0 0 0 0 0 0 0 0 0 0 0 0 4838000 5805400 0 21030 133 20377 390479;390480;390481;390482;390483;390484 239245;239246;239247 239246 3 VDFSLAR Unmodified 806.42865 0.42865276 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 27.404 26.387 2 0.0043665 12085 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 104.11 76.99 60759000 11710000 0 10486000 0 0 0 0 0 0 0 0 0 7431600 2356900 0 0 0 0 9373300 11306000 8094500 0 0 0 21031 828 20378 390485;390486;390487;390488;390489;390490;390491 239248;239249;239250 239250 2 VDGAEVVVK Unmodified 914.5073 0.50729701 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 16.704 17.341 1;2 6.9009E-05 6243 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 144.12 101 11578000000 1191900000 1162500000 1081700000 0 0 0 2223800000 2211200000 2059800000 3631900 0 0 267930000 260490000 263420000 1115300 695270 1006400 283830000 292930000 271730000 0 0 0 21032 428 20379 390492;390493;390494;390495;390496;390497;390498;390499;390500;390501;390502;390503;390504;390505;390506;390507;390508;390509;390510;390511;390512;390513;390514;390515;390516;390517;390518;390519 239251;239252;239253;239254;239255;239256;239257;239258;239259;239260;239261;239262;239263;239264;239265;239266 239253 13 VDGAWELSDNLK Unmodified 1345.6514 0.65139506 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.086 35.233 2 0.0015785 13899 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 80.763 80.37 75578000 5006200 4582900 4388000 0 0 0 8931900 0 8564500 4456600 4522800 3182800 4192600 3058000 4437500 0 0 0 4950000 6286800 6742700 1152400 0 1122500 21033 1877 20380 390520;390521;390522;390523;390524;390525;390526;390527;390528;390529;390530;390531;390532;390533;390534;390535 239267 239267 1 VDGDQIMYIIAR Unmodified 1392.7071 0.7071358 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.208 46.868 2 8.6992E-19 23170 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 225.66 214.83 232000000 20534000 16173000 13988000 0 0 0 23649000 26229000 21521000 0 0 0 15125000 16974000 13002000 0 0 0 21418000 22296000 21091000 0 0 0 21034 1360 20381 390536;390537;390538;390539;390540;390541;390542;390543;390544;390545;390546;390547 239268;239269;239270;239271;239272;239273;239274;239275;239276;239277 239268 10 VDGFFEIGLRPWDFAAGELLVR Unmodified 2506.3009 0.30088005 787 P0ADG4 suhB Inositol-1-monophosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 1 1 1 1 1 1 55.503 54.022 3 2.3254E-07 26774 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.08 108 667320000 55829000 56596000 47737000 0 0 0 64609000 61216000 69406000 0 0 0 38265000 37850000 33308000 0 0 0 71386000 72536000 58582000 0 0 0 21035 787 20382 390548;390549;390550;390551;390552;390553;390554;390555;390556;390557;390558;390559;390560;390561 239278;239279;239280;239281;239282;239283;239284;239285;239286;239287;239288;239289 239285 12 VDGGAVANNFLMQFQSDILGTR Unmodified 2352.1532 0.15322954 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 4 2 2 2 3 55.63 54.151 2;3 1.0832E-43 26618 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.22 176.24 5942200000 149940000 122320000 142040000 0 0 0 844840000 635810000 753850000 0 0 0 369230000 741320000 515290000 0 0 0 484370000 300850000 882380000 0 0 0 21036 239 20383 390562;390563;390564;390565;390566;390567;390568;390569;390570;390571;390572;390573;390574;390575;390576;390577;390578;390579;390580;390581;390582;390583;390584;390585;390586;390587;390588;390589;390590;390591 239290;239291;239292;239293;239294;239295;239296;239297;239298;239299;239300;239301;239302;239303;239304;239305 239299 15 VDGGAVANNFLMQFQSDILGTR Oxidation (M) 2368.1481 0.14814416 239 P0A6F3 glpK Glycerol kinase yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 55.352 53.839 3 0.0024861 25590 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 57.227 35.278 90580000 0 0 0 0 0 0 12573000 11113000 12530000 0 0 0 0 12679000 14448000 0 0 0 3765200 14191000 9279200 0 0 0 21037 239 20383 390592;390593;390594;390595;390596;390597;390598;390599 239306 239306 94 1 VDGHLLDLPR Unmodified 1133.6193 0.61930707 1407 P33030 yeiR Uncharacterized protein YeiR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 2 2 2 29.008 27.774 2;3 0.00045524 12816 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 76.143 71.991 364960000 21417000 31578000 23356000 608930 754660 535080 32618000 32451000 26897000 1423500 0 0 16367000 19159000 15793000 0 992630 905320 46717000 45366000 48022000 0 0 0 21038 1407 20384 390600;390601;390602;390603;390604;390605;390606;390607;390608;390609;390610;390611;390612;390613;390614;390615;390616;390617;390618;390619;390620;390621;390622;390623;390624;390625;390626;390627;390628;390629 239307;239308;239309;239310;239311;239312;239313;239314;239315;239316;239317;239318;239319;239320 239311 12 VDGLGVLK Unmodified 799.48035 0.48035398 1744 P69795 chbB N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.796 25.649 2 0.0026864 11194 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 98.418 33.641 479520000 34190000 25738000 24942000 0 0 0 54137000 54924000 45941000 0 0 0 52049000 47719000 47771000 0 0 0 30485000 31843000 29786000 0 0 0 21039 1744 20385 390630;390631;390632;390633;390634;390635;390636;390637;390638;390639;390640;390641 239321;239322;239323;239324;239325;239326;239327;239328 239326 6 VDGLHYFSDNK Unmodified 1293.599 0.59896556 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.275 22.459 2 1.3469E-07 9556 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 170.69 150.9 129620000 14706000 13330000 12610000 0 0 0 11117000 8456000 8414700 2721000 0 1432300 8076700 8903200 6249000 0 0 0 10793000 10442000 11208000 0 1163700 0 21040 144 20386 390642;390643;390644;390645;390646;390647;390648;390649;390650;390651;390652;390653;390654;390655;390656 239329;239330;239331;239332;239333;239334 239330 6 VDGLHYFSDNKDVDGDQTYMR Unmodified 2474.0809 0.080852456 144 P06996 ompC Outer membrane protein C yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 30.358 28.952 3;4 3.9311E-43 13591 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 230.99 230.99 2065300000 121500000 117670000 109820000 45718000 37391000 55135000 60723000 64271000 61954000 184450000 217590000 188860000 19286000 72521000 19312000 55160000 54313000 52016000 77802000 92517000 81290000 103420000 90861000 81679000 21041 144 20387 390657;390658;390659;390660;390661;390662;390663;390664;390665;390666;390667;390668;390669;390670;390671;390672;390673;390674;390675;390676;390677;390678;390679;390680;390681;390682;390683;390684;390685;390686;390687;390688;390689;390690;390691;390692;390693;390694;390695;390696;390697;390698;390699;390700;390701;390702 239335;239336;239337;239338;239339;239340;239341;239342;239343;239344;239345;239346;239347;239348;239349;239350;239351;239352;239353;239354;239355;239356;239357;239358;239359;239360;239361;239362;239363;239364;239365;239366;239367;239368;239369;239370;239371;239372;239373;239374 239366 40 VDGTINLPGSK Unmodified 1099.5873 0.58733824 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.385 23.488 2 2.2716E-07 10212 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.04 171.84 495180000 69059000 58077000 54188000 0 0 0 35702000 31270000 28265000 0 0 0 32189000 24348000 30310000 0 0 0 44764000 44476000 42530000 0 0 0 21042 232 20388 390703;390704;390705;390706;390707;390708;390709;390710;390711;390712;390713;390714 239375;239376;239377;239378;239379;239380;239381;239382;239383;239384 239381 10 VDGTKPVAEVR Unmodified 1169.6404 0.64043645 1733 P69441 adk Adenylate kinase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 11.978 12.667 2;3 1.9008E-05 3446 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 164.43 141.68 14747000000 556560000 539890000 545740000 3915500 5867700 6976400 1466600000 1466700000 1389900000 0 1158200 1070800 1458400000 1256100000 1158000000 1326400 1667600 1691400 1752900000 1646500000 1479400000 2111800 2675400 2095000 21043 1733 20389 390715;390716;390717;390718;390719;390720;390721;390722;390723;390724;390725;390726;390727;390728;390729;390730;390731;390732;390733;390734;390735;390736;390737;390738;390739;390740;390741;390742;390743;390744;390745;390746;390747;390748;390749;390750;390751 239385;239386;239387;239388;239389;239390;239391;239392;239393;239394;239395;239396;239397;239398;239399;239400;239401;239402 239386 18 VDGVFTADPAK Unmodified 1118.5608 0.56078914 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.22 23.323 2 0.0026717 10484 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 68.893 53.231 348310000 31880000 29517000 37787000 0 0 0 28724000 29365000 30854000 0 0 0 21564000 16527000 18192000 0 0 0 32231000 34984000 36687000 0 0 0 21044 338 20390 390752;390753;390754;390755;390756;390757;390758;390759;390760;390761;390762;390763 239403;239404;239405;239406 239404 4 VDGVFTADPAKDPTATMYEQLTYSEVLEK Unmodified 3217.5377 0.53767702 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 51.583 50.35 3 2.6169E-23 24926 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.49 172.53 1411200000 174830000 160000000 159460000 1097600 0 1734900 98527000 0 91121000 0 0 0 105930000 114840000 81588000 0 0 0 133940000 124590000 163500000 0 0 0 21045 338 20391 390764;390765;390766;390767;390768;390769;390770;390771;390772;390773;390774;390775;390776 239407;239408;239409;239410;239411;239412 239407 6 VDHVVVEGTGGWR Unmodified 1409.7052 0.70516197 237 P0A6E9 bioD2 ATP-dependent dethiobiotin synthetase BioD 2 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 2 2 1 2 2 21.504 21.646 2;3 1.7148E-05 8406 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 72.62 69.298 248800000 0 0 0 0 263910 0 11928000 24574000 9354300 0 0 0 51022000 39657000 38295000 0 0 0 19735000 28657000 25310000 0 0 0 21046 237 20392 390777;390778;390779;390780;390781;390782;390783;390784;390785;390786;390787;390788;390789;390790;390791 239413;239414;239415;239416;239417;239418;239419 239417 2 VDHYADLSNVESVMAAAK Unmodified 1918.9095 0.90947702 109 P05194 aroD 3-dehydroquinate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 39.779 38.106 2;3 6.0742E-14 18354 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 144.33 133.47 395790000 57155000 47913000 39908000 0 0 0 28640000 27937000 24720000 0 0 0 26689000 29272000 27178000 0 0 0 29913000 29667000 26797000 0 0 0 21047 109 20393 390792;390793;390794;390795;390796;390797;390798;390799;390800;390801;390802;390803;390804;390805;390806;390807;390808;390809;390810;390811;390812;390813;390814;390815 239420;239421;239422;239423;239424;239425;239426;239427;239428;239429;239430;239431 239429 12 VDIAWYGNLSAMEAVDR Unmodified 1908.904 0.90399771 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By MS/MS 2 2 1 2 53.505 52.155 2 0.027514 25601 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.533 52.375 35240000 0 0 0 0 0 0 0 0 0 0 0 0 0 6202500 9494600 0 0 0 4579300 0 14964000 0 0 0 21048 1124 20394 390816;390817;390818;390819;390820;390821;390822 239432;239433 239433 1 VDIDNWR Unmodified 916.44028 0.44028008 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.083 25.936 2 0.00026666 11786 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.77 121.75 1363400000 111120000 112850000 106260000 0 0 0 124520000 123420000 126420000 0 0 0 112030000 88005000 89747000 0 0 0 124100000 118530000 126390000 0 0 0 21049 702 20395 390823;390824;390825;390826;390827;390828;390829;390830;390831;390832;390833;390834 239434;239435;239436;239437;239438;239439;239440;239441;239442;239443;239444;239445 239440 12 VDIGTSHIAGYTLEGK Unmodified 1659.8468 0.84680041 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 30.106 28.749 2;3 2.4639E-12 13299 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 176.25 170.41 745560000 84179000 74980000 57620000 0 0 0 71043000 66135000 65573000 0 0 0 46175000 53035000 42645000 0 0 0 55039000 69385000 59751000 0 0 0 21050 111 20396 390835;390836;390837;390838;390839;390840;390841;390842;390843;390844;390845;390846;390847;390848;390849;390850;390851;390852;390853;390854;390855;390856;390857;390858 239446;239447;239448;239449;239450;239451;239452;239453;239454;239455;239456;239457;239458;239459 239456 12 VDIITGTLGK Unmodified 1015.5914 0.59136099 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.932 31.402 2 5.0462E-05 14924 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.79 85.664 3218800000 308390000 278790000 252830000 1005300 1194300 1192900 338120000 281610000 304580000 0 1729200 0 217250000 235500000 226840000 0 0 0 265950000 250400000 253380000 0 0 0 21051 635 20397 390859;390860;390861;390862;390863;390864;390865;390866;390867;390868;390869;390870;390871;390872;390873;390874 239460;239461;239462;239463;239464;239465;239466;239467;239468;239469;239470;239471 239463 12 VDILVNNAGGGGPK Unmodified 1309.699 0.69901396 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.546 23.555 2 7.9874E-11 10687 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.64 159.34 149140000 24628000 27284000 22415000 0 0 0 18617000 21132000 14558000 0 0 0 2773900 3032700 2124500 0 0 0 4981800 3774200 3820000 0 0 0 21052 886 20398 390875;390876;390877;390878;390879;390880;390881;390882;390883;390884;390885;390886 239472;239473;239474;239475;239476;239477 239473 6 VDILVNNAGGGGPKPFDMPMADFR Unmodified 2517.2144 0.21444959 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 2 2 1 2 2 48.859 47.52 2;3 1.2872E-30 23316 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 255.93 251.22 3815100000 715890000 743660000 656780000 0 0 0 346040000 329310000 367050000 0 0 0 100110000 90586000 112680000 0 0 0 112650000 120440000 119850000 0 0 0 21053 886 20399 390887;390888;390889;390890;390891;390892;390893;390894;390895;390896;390897;390898;390899;390900;390901;390902;390903;390904;390905;390906;390907;390908 239478;239479;239480;239481;239482;239483;239484;239485;239486;239487;239488;239489 239485 12 VDIWTDVPGIYTTDPR Unmodified 1846.9101 0.91012895 191 P08660 lysC Lysine-sensitive aspartokinase 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.86 50.613 2 1.5544E-06 24892 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 104.59 89.391 71667000 5845300 7144800 5783800 0 0 0 8187300 7529000 6855500 0 0 0 3782300 3531900 4699800 0 0 0 4458100 6502500 7346300 0 0 0 21054 191 20400 390909;390910;390911;390912;390913;390914;390915;390916;390917;390918;390919;390920 239490 239490 1 VDKDAVSR Unmodified 888.46649 0.46649483 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 5.2187 6.1403 2 0.018297 1315 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 78.149 43.747 231430000 0 0 0 0 0 0 0 0 0 0 0 0 31908000 30771000 28218000 0 0 0 45210000 49006000 46313000 0 0 0 21055 444 20401 390921;390922;390923;390924;390925;390926 239491;239492;239493 239492 3 VDKSQETTHFGFQTVAK Unmodified 1921.9534 0.95339074 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 19.53 19.691 3 0.14963 6090 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 21.33 17.669 27304000 0 0 0 2466700 3475300 3030700 0 0 0 6050200 4674300 4335300 0 0 0 0 0 0 0 0 0 0 0 3271800 21056 408 20402 390927;390928;390929;390930;390931;390932;390933 239494;239495 239495 2 VDLAQLVK Unmodified 884.53312 0.53311783 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.18 33.832 2 0.00024649 16234 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.17 118.86 1237400000 118110000 90911000 94812000 3129400 2175400 2924000 101070000 95537000 106920000 0 0 0 96496000 107270000 91001000 2108200 1943300 2217700 98921000 115470000 103700000 2673200 0 0 21057 1172 20403 390934;390935;390936;390937;390938;390939;390940;390941;390942;390943;390944;390945;390946;390947;390948;390949;390950;390951;390952;390953;390954 239496;239497;239498;239499;239500;239501;239502;239503;239504;239505;239506;239507;239508;239509;239510;239511 239501 16 VDLDGNPCGELDEQHVEHAR Unmodified 2289.008 0.008021864 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 21.91 21.796 3;4 2.0326E-24 9206 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 201.67 201.67 3246400000 293210000 228920000 207880000 3887700 4387500 4680200 249140000 210710000 259840000 61910000 60981000 54275000 252110000 212440000 199280000 32572000 38058000 33580000 294840000 263600000 248860000 13676000 10211000 7315500 21058 1576 20404 390955;390956;390957;390958;390959;390960;390961;390962;390963;390964;390965;390966;390967;390968;390969;390970;390971;390972;390973;390974;390975;390976;390977;390978;390979;390980;390981;390982;390983;390984;390985;390986;390987;390988;390989;390990;390991;390992;390993;390994;390995;390996;390997;390998;390999;391000 239512;239513;239514;239515;239516;239517;239518;239519;239520;239521;239522;239523;239524;239525;239526;239527;239528;239529;239530;239531;239532;239533;239534;239535;239536;239537;239538;239539;239540;239541;239542;239543;239544;239545;239546;239547 239525 36 VDLINTR Unmodified 829.46577 0.46576654 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.152 20.509 2 0.0011749 8123 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 134.66 69.887 989670000 140610000 140050000 108790000 5572900 5905700 4446500 50513000 51869000 51744000 0 0 0 51758000 40221000 42020000 0 0 0 105820000 90531000 96551000 3262700 0 0 21059 1302 20405 391001;391002;391003;391004;391005;391006;391007;391008;391009;391010;391011;391012;391013;391014;391015;391016 239548;239549;239550;239551;239552;239553;239554;239555;239556;239557;239558;239559 239550 10 VDLKEDGK Unmodified 902.47091 0.4709115 1868 P76536 yfeX Probable deferrochelatase/peroxidase YfeX yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 10.875 11.644 2 0.0015405 2693 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 118.74 91.947 380280000 28386000 17899000 27066000 0 0 0 51145000 40127000 42676000 0 0 1182200 33782000 25653000 22481000 0 0 0 33863000 29892000 26126000 0 0 0 21060 1868 20406 391017;391018;391019;391020;391021;391022;391023;391024;391025;391026;391027;391028;391029 239560;239561;239562;239563 239563 1 VDLLDRDGETLEQFR Unmodified 1804.8955 0.89554151 971 P0AFX9 rseB Sigma-E factor regulatory protein RseB yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 38.382 36.841 3 5.8918E-07 17948 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 115.5 106.94 94399000 19968000 14647000 14576000 1592500 1323900 1824900 0 0 0 0 0 0 16886000 11295000 12286000 0 0 0 0 0 0 0 0 0 21061 971 20407 391030;391031;391032;391033;391034;391035;391036;391037;391038 239564;239565 239564 1 VDLLNQEIEFLK Unmodified 1459.7922 0.79224564 17 CON__P35908 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 52.009 50.976 2 1.8249E-07 20204 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 182.64 171.04 357450000 0 0 0 30803000 26405000 23612000 0 0 0 15802000 21609000 13978000 0 0 0 16621000 13071000 16209000 0 0 2906400 52073000 63348000 61017000 + 21062 17 20408 391039;391040;391041;391042;391043;391044;391045;391046;391047;391048;391049;391050;391051 239566;239567;239568;239569;239570;239571;239572;239573;239574;239575;239576;239577 239574 12 VDLLNQHSNR Unmodified 1194.6105 0.6105333 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 14.191 14.972 2;3 3.8323E-07 4920 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 176.33 167.48 3955100000 428550000 440320000 445340000 1385000 2656800 0 465540000 484280000 502510000 2225400 1841600 1332700 207610000 179910000 165140000 0 0 0 242340000 200460000 183680000 0 0 0 21063 1086 20409 391052;391053;391054;391055;391056;391057;391058;391059;391060;391061;391062;391063;391064;391065;391066;391067;391068;391069;391070;391071;391072;391073;391074;391075;391076;391077;391078;391079;391080;391081 239578;239579;239580;239581;239582;239583;239584;239585;239586;239587;239588;239589;239590;239591;239592;239593 239579 13 VDLLVYSAGIAK Unmodified 1247.7125 0.71253876 116 P05707 srlD Sorbitol-6-phosphate 2-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.851 41.239 2 1.9144E-06 19957 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 145.34 136.88 386300000 25544000 27199000 24607000 0 0 0 57740000 56921000 50840000 0 0 0 28589000 23590000 21476000 0 0 0 22466000 26231000 21094000 0 0 0 21064 116 20410 391082;391083;391084;391085;391086;391087;391088;391089;391090;391091;391092;391093 239594;239595;239596;239597;239598;239599;239600;239601;239602;239603;239604;239605 239602 12 VDLMSFSGHK Unmodified 1119.5383 0.53827956 228 P0A6B7 iscS Cysteine desulfurase IscS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 26.403 25.343 2;3 1.9104E-05 10795 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 149.94 144.63 2477300000 337520000 280520000 304800000 7649200 7044200 8033200 135600000 134370000 137950000 3559600 2058800 2889000 163550000 140080000 139160000 1951600 2002700 1647800 226530000 204830000 213530000 7722100 7303000 7036100 21065 228 20411 391094;391095;391096;391097;391098;391099;391100;391101;391102;391103;391104;391105;391106;391107;391108;391109;391110;391111;391112;391113;391114;391115;391116;391117;391118;391119;391120;391121;391122;391123;391124;391125;391126 239606;239607;239608;239609;239610;239611;239612;239613;239614;239615;239616;239617;239618;239619;239620;239621;239622;239623;239624;239625;239626;239627 239627 22 VDLNRPMK Oxidation (M) 987.51715 0.51715019 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 1 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.24 12.063 2 0.049126 3101 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 60.799 50.888 104370000 12471000 9761400 11262000 0 0 0 16017000 13857000 0 0 0 0 0 5550800 10095000 0 0 0 10015000 7742600 7598000 0 0 0 21066 696;1097 20412 391127;391128;391129;391130;391131;391132;391133;391134;391135;391136 239628 239628 1 VDLNRPMK Unmodified 971.52224 0.52223557 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.767 13.607 2 0.001275 3792 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 125.25 101.46 761470000 19049000 14956000 10108000 0 0 0 75768000 75175000 64268000 0 0 0 86786000 80063000 89818000 0 0 0 83505000 84542000 77435000 0 0 0 21067 696;1097 20412 391137;391138;391139;391140;391141;391142;391143;391144;391145;391146;391147;391148 239629;239630;239631;239632;239633;239634 239633 6 VDLQNRPFR Unmodified 1143.6149 0.6148904 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 17.247 17.906 2;3 0.00022666 6174 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 132.57 104.35 1405800000 126180000 133220000 122260000 855000 880210 822340 117900000 123830000 105650000 1699400 0 0 90572000 95175000 87730000 0 0 0 150540000 135640000 112850000 0 0 0 21068 543 20413 391149;391150;391151;391152;391153;391154;391155;391156;391157;391158;391159;391160;391161;391162;391163;391164;391165;391166;391167;391168;391169;391170;391171;391172;391173;391174;391175;391176 239635;239636;239637;239638;239639;239640;239641;239642;239643;239644;239645;239646;239647;239648;239649;239650;239651;239652;239653;239654;239655;239656 239651 22 VDLQPFN Unmodified 831.41267 0.41266834 892 P0AEW9 fruK 1-phosphofructokinase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 2 39.297 37.586 1;2 0.016885 17672 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 80.294 71.053 218140000 18581000 16159000 16402000 0 379900 0 15418000 13387000 13237000 0 528410 0 19638000 17131000 16557000 0 0 0 26158000 21094000 23475000 0 0 0 21069 892 20414 391177;391178;391179;391180;391181;391182;391183;391184;391185;391186;391187;391188;391189;391190;391191;391192;391193;391194;391195;391196;391197;391198;391199;391200;391201;391202 239657;239658 239658 2 VDLSTFSDEEVMR Oxidation (M) 1542.6872 0.68718822 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 4 4 3 1 2 2 5 4 3 2 1 1 3 5 3 37.043 35.532 2 1.011E-08 13455 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 164.64 162.13 606320000 4897700 5050000 3959300 0 0 0 0 4646300 5437600 44344000 41654000 36420000 4001400 7516300 6567600 128240000 69628000 69527000 9901200 6144900 7933400 54104000 50037000 46305000 21070 463 20415 391203;391204;391205;391206;391207;391208;391209;391210;391211;391212;391213;391214;391215;391216;391217;391218;391219;391220;391221;391222;391223;391224;391225;391226;391227;391228;391229;391230;391231;391232;391233;391234;391235;391236;391237;391238;391239;391240;391241;391242;391243;391244;391245;391246;391247;391248;391249;391250 239659;239660;239661;239662;239663;239664;239665;239666;239667;239668;239669;239670;239671;239672;239673;239674;239675;239676;239677;239678;239679;239680;239681;239682;239683;239684;239685;239686;239687;239688;239689;239690;239691;239692;239693;239694;239695;239696;239697;239698;239699 239696 276 41 VDLSTFSDEEVMR Unmodified 1526.6923 0.6922736 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 5 1 2 2 2 3 2 1 1 6 4 6 1 1 1 3 2 6 42.207 40.816 1;2;3 6.0487E-31 14488 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 255.19 240.52 19014000000 326390000 292260000 296660000 5323100 5585100 5441000 245620000 229570000 228250000 992600000 907040000 1008700000 286080000 315780000 288720000 3304100000 2622300000 3141500000 375610000 377790000 336590000 1243500000 1064700000 1114100000 21071 463 20415 391251;391252;391253;391254;391255;391256;391257;391258;391259;391260;391261;391262;391263;391264;391265;391266;391267;391268;391269;391270;391271;391272;391273;391274;391275;391276;391277;391278;391279;391280;391281;391282;391283;391284;391285;391286;391287;391288;391289;391290;391291;391292;391293;391294;391295;391296;391297;391298;391299;391300;391301;391302;391303;391304;391305 239700;239701;239702;239703;239704;239705;239706;239707;239708;239709;239710;239711;239712;239713;239714;239715;239716;239717;239718;239719;239720;239721;239722;239723;239724;239725;239726;239727;239728;239729;239730;239731;239732;239733;239734;239735;239736;239737;239738;239739;239740;239741;239742;239743;239744;239745;239746;239747;239748;239749;239750;239751;239752 239717 53 VDLVFAPSVK Unmodified 1073.6121 0.61209643 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.577 36.904 2 0.0019163 18229 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 81.95 79.893 224790000 27162000 20489000 27958000 0 0 0 17772000 18513000 18914000 0 0 0 15642000 12746000 10840000 0 0 0 20889000 17695000 16165000 0 0 0 21072 1375 20416 391306;391307;391308;391309;391310;391311;391312;391313;391314;391315;391316;391317 239753;239754;239755;239756;239757;239758;239759;239760;239761;239762;239763;239764 239755 12 VDMALVGDIK Unmodified 1059.5634 0.56343168 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.169 34.417 2 0.00031825 15882 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 110.88 94.106 1186500000 191510000 189170000 183620000 16416000 16361000 14113000 118530000 130770000 126860000 7045100 7949100 5924800 29008000 25149000 26101000 0 0 0 32813000 33294000 30773000 0 1116200 0 21073 147 20417 391318;391319;391320;391321;391322;391323;391324;391325;391326;391327;391328;391329;391330;391331;391332;391333;391334;391335;391336 239765;239766;239767;239768;239769;239770;239771;239772;239773;239774;239775;239776;239777;239778;239779;239780;239781;239782 239781 18 VDMVDVFR Unmodified 979.4797 0.47970205 1786 P75874 yccU Uncharacterized protein YccU yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.904 38.216 2 6.534E-05 17829 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.68 121.91 824200000 120170000 110470000 89785000 0 0 0 113170000 107540000 100290000 0 0 0 52667000 0 36148000 0 0 0 0 47613000 46358000 0 0 0 21074 1786 20418 391337;391338;391339;391340;391341;391342;391343;391344;391345;391346;391347;391348 239783;239784;239785;239786;239787;239788;239789;239790;239791;239792;239793 239792 10 VDPEIQNVK Unmodified 1040.5502 0.55022446 17 CON__P35908 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.77 17.058 2 0.00024392 4735 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 122.74 75.748 285290000 0 0 0 19313000 18649000 16133000 0 0 0 8657900 6522700 16355000 0 0 0 33231000 20925000 24733000 0 0 0 27228000 44131000 49411000 + 21075 17 20419 391349;391350;391351;391352;391353;391354;391355;391356;391357;391358;391359;391360 239794;239795;239796;239797;239798;239799;239800;239801 239797 8 VDPPKKPLK Unmodified 1020.6332 0.63316622 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.54 11.356 2 0.0079353 2688 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.953 86.953 136210000 33229000 23200000 26528000 0 0 0 6795000 8085900 7771100 0 0 0 5813500 3400100 3552100 0 0 0 6395400 7061100 4375500 0 0 0 21076 219 20420 391361;391362;391363;391364;391365;391366;391367;391368;391369;391370;391371;391372 239802;239803;239804 239802 3 VDPQTGEVIDQGTLDHLTGQLTAFGEFIQR Unmodified 3284.6313 0.63133491 1012 P0AGE6 chrR Chromate reductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.88 53.415 3 4.5705E-42 26559 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 219.27 217 1198500000 96993000 81440000 72935000 0 0 0 120250000 140990000 120550000 0 0 0 90308000 80642000 85973000 0 0 0 102590000 110660000 95204000 0 0 0 21077 1012 20421 391373;391374;391375;391376;391377;391378;391379;391380;391381;391382;391383;391384 239805;239806;239807;239808;239809;239810;239811;239812;239813 239805 9 VDPTNDR Unmodified 815.37735 0.37734547 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9.701 10.291 2 0.00022548 1977 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 133.47 131.52 29995000000 173790000 182380000 183400000 1445500 4027300 2143300 28477000 31582000 29492000 1583300000 1353400000 1458700000 157780000 128910000 75404000 5670700000 6542500000 6756300000 186760000 191180000 168520000 1635400000 1824500000 1624900000 21078 463 20422 391385;391386;391387;391388;391389;391390;391391;391392;391393;391394;391395;391396;391397;391398;391399;391400;391401;391402;391403;391404;391405;391406;391407;391408 239814;239815;239816;239817;239818;239819;239820;239821;239822;239823;239824;239825;239826;239827;239828;239829;239830;239831;239832;239833;239834;239835 239828 17 VDPTNDRLSALVEIYR Unmodified 1859.9741 0.97412619 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 42.08 40.912 2;3 1.2135E-13 15189 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 159.13 156.23 1850800000 0 0 0 0 1628200 1434200 0 0 0 0 0 2912200 0 0 0 484640000 511430000 532760000 0 0 0 104960000 110930000 100080000 21079 463 20423 391409;391410;391411;391412;391413;391414;391415;391416;391417;391418;391419;391420;391421;391422;391423;391424;391425 239836;239837;239838;239839;239840;239841;239842;239843;239844;239845;239846;239847;239848 239836 13 VDPYTQK Unmodified 849.42323 0.42323303 1603 P52096 yaeR Uncharacterized protein YaeR yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 11.663 12.409 2 0.068859 3260 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 64.236 31.766 148710000 28058000 0 0 0 0 0 31789000 29988000 27547000 0 0 0 15882000 15174000 0 0 0 0 0 0 0 0 0 269730 21080 1603 20424 391426;391427;391428;391429;391430;391431;391432 239849;239850 239849 1 VDQAGLK Unmodified 729.4021 0.40210366 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 11.411 11.974 2 0.0037308 2551 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 106.76 68.39 72325000 12214000 0 0 0 8071300 7920600 0 0 0 0 29988000 0 0 0 0 0 0 1506800 0 0 0 0 0 12625000 21081 1742 20425 391433;391434;391435;391436;391437;391438 239851;239852 239851 1 VDQAGLKK Unmodified 857.49707 0.49706667 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.5502 9.1711 2 0.0010935 1924 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 119.57 84.46 333960000 2442100 158470 0 10449000 12293000 10422000 18506000 21216000 21639000 46626000 42550000 38651000 4405000 4974300 0 8629300 5518600 5534300 8685900 8846300 7821000 19622000 16955000 18015000 21082 1742 20426 391439;391440;391441;391442;391443;391444;391445;391446;391447;391448;391449;391450;391451;391452;391453;391454;391455;391456;391457;391458;391459;391460;391461;391462 239853;239854;239855;239856;239857;239858;239859;239860;239861;239862;239863;239864;239865;239866;239867;239868 239861 16 VDQEYEGIVR Unmodified 1206.5881 0.58806652 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 23.608 22.453 2 3.6799E-05 7732 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 159.37 142.13 21198000 0 0 0 0 0 0 0 0 0 5399400 3766000 4604900 0 0 0 0 0 0 0 0 0 3788500 3639500 0 21083 531 20427 391463;391464;391465;391466;391467;391468 239869;239870;239871;239872 239871 4 VDQFLTQSNIDHTVNSCAVGEYK Unmodified 2624.2177 0.21768029 1749 P69822 ulaB Ascorbate-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 34.11 32.645 3 2.7163E-10 14862 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 125.73 120.44 141500000 5129600 7795000 0 0 0 0 19668000 17913000 16196000 0 0 0 15589000 12899000 16793000 0 0 0 7982700 12634000 8899800 0 0 0 21084 1749 20428 391469;391470;391471;391472;391473;391474;391475;391476;391477;391478;391479 239873;239874;239875;239876;239877 239877 5 VDQLSNDVNAMR Unmodified 1360.6405 0.6405128 1740 P69776 lpp Major outer membrane lipoprotein Lpp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 24.248 23.372 2;3 7.0454E-31 8396 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 261.65 251.41 3018400000 35932000 40805000 33438000 184570000 193960000 192500000 50757000 38664000 39646000 331510000 358940000 341280000 44731000 45265000 45404000 88761000 53255000 58694000 55336000 58886000 70668000 209680000 222120000 223590000 21085 1740 20429 391480;391481;391482;391483;391484;391485;391486;391487;391488;391489;391490;391491;391492;391493;391494;391495;391496;391497;391498;391499;391500;391501;391502;391503;391504;391505;391506;391507;391508;391509;391510;391511;391512;391513;391514;391515;391516 239878;239879;239880;239881;239882;239883;239884;239885;239886;239887;239888;239889;239890;239891;239892;239893;239894;239895;239896;239897;239898;239899;239900;239901;239902;239903;239904;239905;239906;239907;239908;239909 239881 32 VDQLSNDVNAMR Oxidation (M) 1376.6354 0.63542742 1740 P69776 lpp Major outer membrane lipoprotein Lpp yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 2 2 2 20.308 20.023 2 8.07E-05 4331 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 104.22 101.24 105890000 0 0 0 10024000 10473000 9729000 0 0 0 12813000 10177000 16665000 0 0 0 1182800 0 0 0 0 0 10764000 12260000 11807000 21086 1740 20429 391517;391518;391519;391520;391521;391522;391523;391524;391525;391526;391527;391528;391529;391530;391531;391532;391533;391534 239910;239911;239912;239913;239914;239915;239916;239917;239918;239919;239920 239919 598 11 VDRPTAECAAALDK Unmodified 1515.7351 0.73514147 1356 P31063 yedD Uncharacterized lipoprotein YedD yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 15.309 16.138 2 0.0013451 5460 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.533 33.927 43330000 0 2886700 0 0 0 0 4569700 2887500 2628000 0 0 0 4352700 3592700 3017300 0 0 0 6730200 6518400 6146500 0 0 0 21087 1356 20430 391535;391536;391537;391538;391539;391540;391541;391542;391543;391544 239921;239922 239922 2 VDRPTAECAAALDKAPLPTPLP Unmodified 2302.1991 0.1991171 1356 P31063 yedD Uncharacterized lipoprotein YedD yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 40.176 38.346 3 9.0441E-05 15577 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 81.665 78.267 30721000 0 0 0 1360300 1590600 1614600 0 0 0 7662000 3101400 3799200 0 0 0 0 3196000 0 0 0 2536000 0 3077700 2782900 21088 1356 20431 391545;391546;391547;391548;391549;391550;391551;391552;391553;391554 239923;239924;239925;239926 239923 3 VDSASEFK Unmodified 881.41306 0.41306227 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.814 13.655 2 0.054607 4096 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 63.565 53.427 1530200000 117730000 103800000 101910000 0 0 0 151000000 148110000 147330000 0 0 0 122590000 102220000 102480000 0 0 0 145300000 140960000 146780000 0 0 0 21089 59 20432 391555;391556;391557;391558;391559;391560;391561;391562;391563;391564;391565;391566 239927;239928 239927 0 VDSIACDLVER Unmodified 1275.6129 0.61290107 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 31.947 30.763 2 0.0001113 13843 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 117.7 96.398 54882000 0 0 3721400 0 0 0 0 0 0 0 0 0 12671000 13065000 12097000 0 0 0 0 7276500 6051100 0 0 0 21090 1559 20433 391567;391568;391569;391570;391571;391572 239929;239930 239930 2 VDSSGFQTEPVAADGK Unmodified 1606.7475 0.74748029 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.527 21.915 2 6.9094E-10 7579 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 136.7 133.85 168240000 8499600 7736900 5354700 1913600 0 0 0 0 0 8468300 6935200 7906900 12999000 11901000 14715000 0 0 0 24096000 22490000 21685000 5484400 4063100 3992200 21091 1940 20434 391573;391574;391575;391576;391577;391578;391579;391580;391581;391582;391583;391584;391585;391586;391587;391588 239931;239932;239933;239934 239931 4 VDSSMNK Unmodified 779.34835 0.34835353 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 5.6742 6.54 2 0.00021486 1609 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 164.78 136.25 3885100000 944630000 1031600000 907000000 0 0 0 174720000 182910000 141840000 0 0 0 64034000 52372000 57829000 0 0 0 106970000 106430000 114730000 0 0 0 21092 943 20435 391589;391590;391591;391592;391593;391594;391595;391596;391597;391598;391599;391600 239935;239936;239937;239938;239939;239940;239941;239942 239942 8 VDSSMNK Oxidation (M) 795.34327 0.34326815 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 1 1 5.5595 6.3102 2 0.022414 1047 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 74.415 60.002 49259000 15563000 18520000 11640000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1680600 1855500 0 0 0 21093 943 20435 391601;391602;391603;391604;391605;391606;391607 239943;239944;239945 239943 449 3 VDSVSLGEIER Unmodified 1202.6143 0.61428128 42 P00861 lysA Diaminopimelate decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 29.354 28.079 2 2.337E-06 12868 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 155.42 146.56 84503000 18180000 17104000 16038000 0 0 0 4255800 4330000 5368000 0 0 0 0 3530400 2677600 0 0 0 4932000 4395600 3691400 0 0 0 21094 42 20436 391608;391609;391610;391611;391612;391613;391614;391615;391616;391617;391618 239946;239947;239948;239949;239950;239951 239951 5 VDTAVIAAFYPEWLTR Unmodified 1850.9567 0.95668521 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 55.152 53.65 2;3 7.2329E-19 25624 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 198.32 192.08 1424000000 0 0 0 0 0 0 127460000 115580000 116890000 10517000 19730000 22575000 149030000 156500000 143500000 0 0 0 181000000 192350000 188910000 0 0 0 21095 723 20437 391619;391620;391621;391622;391623;391624;391625;391626;391627;391628;391629;391630;391631;391632;391633;391634;391635;391636;391637;391638;391639;391640 239952;239953;239954;239955;239956;239957;239958;239959;239960;239961;239962;239963;239964;239965;239966;239967;239968;239969;239970 239965 17 VDTDNILNSSTFK Unmodified 1452.7096 0.70963822 668 P0ABN5 dcuA Anaerobic C4-dicarboxylate transporter DcuA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.524 33.719 2 9.4117E-07 15619 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 136.5 134.35 218230000 0 0 0 0 0 0 25475000 22229000 21120000 3652800 4858000 0 22154000 32852000 27659000 0 0 0 19684000 18307000 19007000 1232800 0 0 21096 668 20438 391641;391642;391643;391644;391645;391646;391647;391648;391649;391650;391651;391652 239971;239972;239973;239974 239974 1 VDTGGLALLLHLIDLAK Unmodified 1761.04 0.040020906 1694 P64602 mlaB Probable phospholipid ABC transporter-binding protein MlaB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.886 54.453 3 0.00041029 26047 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 65.716 65.716 102690000 1977500 1187900 2801600 0 0 3049200 0 24533 220850 0 0 0 30685000 30410000 25024000 0 0 0 0 0 5940400 1371900 0 0 21097 1694 20439 391653;391654;391655;391656;391657;391658;391659;391660;391661;391662;391663 239975 239975 1 VDTGSVLVESAGETMNNIVNAVTR Unmodified 2475.2275 0.22751669 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 55.434 54.071 2;3 3.3297E-60 19909 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 188.44 177.6 333190000 37429000 34445000 10639000 96232000 77878000 76569000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21098 151 20440 391664;391665;391666;391667;391668;391669;391670;391671;391672;391673;391674 239976;239977;239978;239979 239977 4 VDTILAK Unmodified 758.4538 0.45380487 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.747 26.599 2 0.030054 8543 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 66.994 20.642 85812000 0 0 0 0 0 0 0 0 0 3791600 4908600 4634500 2239200 2112700 0 18418000 15265000 17861000 0 0 0 5230000 5423300 5928300 21099 623 20441 391675;391676;391677;391678;391679;391680;391681;391682;391683;391684;391685 239980;239981;239982;239983;239984;239985 239980 6 VDTTQTTTEK Acetyl (Protein N-term) 1164.551 0.55101232 1747 P69805 manZ Mannose permease IID component yes yes 1 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.635 17.09 2 1.5146E-05 5806 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 148.52 140.59 258480000 8753200 0 0 0 0 0 37783000 33806000 29232000 24033000 9699300 14078000 16599000 17911000 14397000 2858000 2200700 2152300 14148000 11596000 13186000 3244400 0 2806300 21100 1747 20442 391686;391687;391688;391689;391690;391691;391692;391693;391694;391695;391696;391697;391698;391699;391700;391701;391702;391703 239986;239987;239988;239989;239990;239991;239992;239993 239992 8 VDTTQTTTEK Unmodified 1122.5404 0.54044763 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 10.437 11.058 2 5.6085E-07 2464 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 174.41 166.07 627720000 0 0 0 0 0 0 89189000 90016000 99662000 33732000 20351000 25410000 41645000 37436000 39456000 0 0 4183400 50859000 46327000 49454000 0 0 0 21101 1747 20442 391704;391705;391706;391707;391708;391709;391710;391711;391712;391713;391714;391715;391716 239994;239995;239996;239997;239998;239999;240000;240001;240002;240003;240004 240003 11 VDTTQTTTEKK Unmodified 1250.6354 0.63541065 1747 P69805 manZ Mannose permease IID component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 10.243 10.413 2;3 2.8641E-07 1864 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 163.94 145.16 54283000 0 0 0 0 0 0 0 0 0 15408000 15128000 18115000 0 0 0 0 0 0 0 0 0 5631500 0 0 21102 1747 20443 391717;391718;391719;391720;391721;391722;391723 240005;240006;240007;240008;240009 240005 5 VDTTQTTTEKK Acetyl (Protein N-term) 1292.646 0.64597533 1747 P69805 manZ Mannose permease IID component yes yes 1 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 12.545 12.701 2 3.7425E-07 2980 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 178.22 165.94 34238000 0 0 0 0 0 0 0 0 0 23279000 0 0 0 0 0 0 1034600 1446100 0 0 0 3198400 2603100 2676400 21103 1747 20443 391724;391725;391726;391727;391728;391729 240010 240010 1 VDVAEQQK Unmodified 915.46616 0.46616048 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 10.981 11.647 2 0.0023436 2874 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.28 87.636 577270000 128300000 108460000 109320000 0 0 0 99168000 0 94482000 0 0 0 19449000 0 15291000 0 2790900 0 0 0 0 0 0 0 21104 1316 20444 391730;391731;391732;391733;391734;391735;391736;391737;391738 240011;240012;240013;240014;240015;240016;240017 240011 5 VDVDTLVYR Unmodified 1078.5659 0.56587452 1930 P77713 yagH Putative beta-xylosidase yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 33.214 31.975 2 9.9943E-05 15144 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.16 108.9 32276000 11892000 10919000 9464100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21105 1930 20445 391739;391740;391741 240018 240018 1 VDVHAIAHLTGGGFWENIPR Unmodified 2188.1178 0.11777073 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 3 3 3 2 2 2 1 1 1 2 2 2 2 1 1 2 1 1 1 45.351 43.845 2;3;4 2.7568E-15 21248 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 154.26 146.27 871640000 238380000 230180000 209940000 11169000 16246000 14190000 11497000 6995700 0 2784200 6176000 6363600 20258000 20610000 9436700 2004500 0 0 0 39044000 20189000 3052300 0 3127500 21106 174 20446 391742;391743;391744;391745;391746;391747;391748;391749;391750;391751;391752;391753;391754;391755;391756;391757;391758;391759;391760;391761;391762;391763;391764;391765;391766;391767;391768;391769;391770;391771;391772;391773;391774 240019;240020;240021;240022;240023;240024;240025;240026;240027 240027 9 VDVLINGER Unmodified 1013.5506 0.55055881 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.488 22.836 2 1.4289E-05 6979 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 160.88 123.32 188760000 0 2160100 0 2368500 3210300 3111100 0 0 0 0 9566300 0 10013000 0 0 34586000 22360000 22286000 0 0 0 28286000 26136000 24679000 21107 1633 20447 391775;391776;391777;391778;391779;391780;391781;391782;391783;391784;391785;391786 240028;240029;240030;240031;240032;240033;240034;240035;240036;240037 240029 10 VDVLINGERVDALALITHR Unmodified 2103.18 0.18003664 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 1 2 2 44.437 43.513 3;4 5.4313E-06 15306 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 87.49 87.081 34123000 0 0 0 0 593910 0 0 0 0 0 0 0 0 0 0 2472400 9176700 8831700 0 0 0 2903900 6176800 3967900 21108 1633 20448 391787;391788;391789;391790;391791;391792;391793;391794;391795;391796;391797 240038;240039;240040 240039 0 VDVPWAR Unmodified 841.44464 0.44463717 1524 P39321 tamB Translocation and assembly module TamB yes yes 0 0 0 By MS/MS 1 31.14 29.686 2 0.043739 13983 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 62.714 52.965 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21109 1524 20449 391798 240041 240041 1 VDVTGTSK Unmodified 805.41815 0.41814765 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.346 11.844 2 0.0023384 2418 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 101.33 82.372 520700000 80519000 92821000 82895000 0 0 0 0 0 0 8479700 7063000 10740000 31655000 28507000 26347000 5564900 5643400 5676300 41795000 36215000 32402000 6222700 9572800 8579500 21110 1621 20450 391799;391800;391801;391802;391803;391804;391805;391806;391807;391808;391809;391810;391811;391812;391813;391814;391815;391816 240042;240043;240044;240045;240046;240047;240048;240049;240050;240051;240052;240053;240054 240044 13 VDVVDDKR Unmodified 944.49271 0.49270958 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 11.21 12.026 2 0.00015617 3072 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.21 123.85 313250000 41045000 39843000 52323000 0 0 0 0 0 34826000 0 0 0 0 45621000 0 0 0 0 0 49338000 50255000 0 0 0 21111 1188 20451 391817;391818;391819;391820;391821;391822;391823 240055;240056;240057;240058;240059;240060 240058 6 VDWQGLEIIEEMRR Unmodified 1772.888 0.88795372 1243 P24205 lpxM Lipid A biosynthesis myristoyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 49.815 48.36 3 3.9722E-06 19633 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 96.464 86.268 29133000 0 0 0 2580200 2843900 1693200 0 0 0 3852100 3286800 6877100 0 0 0 0 0 0 0 0 0 2804700 5195100 0 21112 1243 20452 391824;391825;391826;391827;391828;391829;391830;391831;391832 240061;240062;240063 240061 3 VDYEAIPK Unmodified 933.48075 0.48074791 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.959 21.847 2 0.011839 9252 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 75.854 57.869 1646600000 132170000 132100000 116650000 5048400 4148900 3656000 0 209190000 197060000 18359000 19536000 17092000 115240000 101880000 99169000 6334700 4891700 5214400 144750000 152840000 144980000 6964200 4316700 5027900 21113 1119 20453 391833;391834;391835;391836;391837;391838;391839;391840;391841;391842;391843;391844;391845;391846;391847;391848;391849;391850;391851;391852;391853;391854;391855;391856 240064;240065;240066;240067;240068;240069;240070;240071;240072;240073;240074;240075;240076;240077;240078;240079;240080;240081 240069 18 VDYPLDELR Unmodified 1118.5608 0.56078914 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.141 34.585 2 0.0011019 16887 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.143 72.443 158010000 27679000 33375000 24586000 0 0 0 7533700 6506400 10778000 0 0 0 6789500 7764600 7420400 0 0 0 7177100 8125200 10273000 0 0 0 21114 748 20454 391857;391858;391859;391860;391861;391862;391863;391864;391865;391866;391867;391868 240082;240083;240084;240085;240086;240087;240088 240083 3 VDYPLDELRR Unmodified 1274.6619 0.66190017 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 1 1 1 2 2 2 1 2 1 1 1 1 1 1 1 1 28.84 27.435 2;3 4.2457E-05 12695 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.36 105.47 550120000 83059000 98608000 70572000 1726000 1812100 1666200 49972000 38629000 34729000 4375400 3787000 4146200 20943000 18089000 27584000 0 1382200 1541800 28409000 28649000 23409000 2946400 1986400 2093000 21115 748 20455 391869;391870;391871;391872;391873;391874;391875;391876;391877;391878;391879;391880;391881;391882;391883;391884;391885;391886;391887;391888;391889;391890;391891;391892;391893;391894;391895;391896 240089;240090;240091;240092;240093;240094 240091 6 VEAAQATER Unmodified 973.48287 0.48287317 1476 P37626 yhiI Uncharacterized protein YhiI yes yes 0 0 0 By MS/MS 1 11.053 11.209 2 0.016208 2267 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 66.621 37.52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21116 1476 20456 391897 240095 240095 1 VEAAVWVHQER Unmodified 1322.6731 0.67313356 908 P0AF28 narL Nitrate/nitrite response regulator protein NarL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 1 2 2 3 2 1 1 1 2 2 2 1 2 1 1 1 19.094 19.543 2;3 3.032E-10 7419 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 208.11 200.07 820340000 107180000 104660000 83577000 2774800 0 3559000 112130000 120840000 90459000 3298400 3574700 3041600 21938000 22918000 25009000 0 0 0 33856000 43462000 36127000 0 907150 1023500 21117 908 20457 391898;391899;391900;391901;391902;391903;391904;391905;391906;391907;391908;391909;391910;391911;391912;391913;391914;391915;391916;391917;391918;391919;391920;391921;391922;391923;391924;391925;391926;391927;391928;391929 240096;240097;240098;240099;240100;240101;240102;240103;240104;240105;240106;240107;240108;240109;240110;240111;240112;240113;240114;240115;240116;240117 240110 20 VEAEEAR Unmodified 802.3821 0.38209649 36 P00579 rpoD RNA polymerase sigma factor RpoD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 8.1972 8.8714 2 0.0011261 1996 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 135.87 18.166 3373300000 23645000 9706800 14720000 0 0 94730 78974000 68675000 64733000 0 0 0 21745000 23758000 13576000 822580000 1032900000 1083100000 33389000 40057000 41696000 0 0 0 21118 36 20458 391930;391931;391932;391933;391934;391935;391936;391937;391938;391939;391940;391941;391942;391943;391944;391945;391946 240118;240119;240120;240121;240122;240123;240124;240125;240126;240127;240128;240129;240130;240131;240132 240118 14 VEAEIISPNK Unmodified 1098.5921 0.59208927 1385 P32099 lplA Lipoate-protein ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.814 20.304 2 1.3774E-05 7939 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 152.34 141.63 249990000 16771000 17794000 14181000 0 0 0 20700000 20174000 22648000 0 0 0 21458000 20992000 20815000 0 0 0 25668000 23529000 25263000 0 0 0 21119 1385 20459 391947;391948;391949;391950;391951;391952;391953;391954;391955;391956;391957;391958 240133;240134;240135;240136;240137;240138;240139;240140;240141;240142;240143 240135 11 VEAHATTPFWR Unmodified 1313.6517 0.65166983 1790 P75915 ycdY Chaperone protein YcdY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 1 2 1 24.341 23.341 2;3 1.4741E-07 10598 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.77 155.57 1181300000 89511000 92358000 95597000 2012100 2300600 2261100 129710000 117110000 114750000 7197300 6657700 7672900 77608000 16275000 47209000 0 0 0 141540000 118980000 100520000 3411400 5681900 2959700 21120 1790 20460 391959;391960;391961;391962;391963;391964;391965;391966;391967;391968;391969;391970;391971;391972;391973;391974;391975;391976;391977;391978;391979;391980;391981;391982;391983;391984;391985;391986;391987;391988;391989;391990;391991;391992;391993;391994 240144;240145;240146;240147;240148;240149;240150;240151;240152;240153;240154;240155;240156;240157;240158;240159;240160;240161;240162;240163;240164;240165;240166;240167;240168 240148 25 VEAITAIEQR Unmodified 1128.6139 0.61388734 1469 P37351 rpiB Ribose-5-phosphate isomerase B yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 24.534 23.56 2 0.00015776 10512 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 125.16 98.371 143740000 13201000 10601000 9334500 0 0 0 15739000 15116000 15036000 0 0 0 9627900 8736900 7963800 0 0 0 11535000 14876000 11972000 0 0 0 21121 1469 20461 391995;391996;391997;391998;391999;392000;392001;392002;392003;392004;392005;392006 240169;240170;240171;240172;240173;240174 240171 3 VEALANFPIER Unmodified 1257.6717 0.67173657 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37.414 35.777 2 1.7803E-10 14159 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 193.82 164.74 935940000 2493300 2748500 0 2926100 3187300 2877700 161520000 159000000 0 51049000 50093000 44634000 106440000 100470000 97204000 9669400 7626500 8324500 0 51372000 47668000 10282000 7344800 9014200 21122 700 20462 392007;392008;392009;392010;392011;392012;392013;392014;392015;392016;392017;392018;392019;392020;392021;392022;392023;392024;392025;392026;392027;392028 240175;240176;240177;240178;240179;240180;240181;240182;240183;240184;240185;240186;240187 240179 13 VEALEIEVAELK Unmodified 1341.7391 0.73914744 1331 P29217 yceH UPF0502 protein YceH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.107 41.585 2 4.3316E-05 20304 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.71 128.19 509840000 41769000 41157000 43442000 483330 0 0 61748000 43379000 50109000 0 0 0 40370000 38929000 35858000 0 0 0 39329000 40229000 33034000 0 0 0 21123 1331 20463 392029;392030;392031;392032;392033;392034;392035;392036;392037;392038;392039;392040;392041 240188;240189;240190;240191;240192;240193;240194;240195;240196;240197;240198;240199 240191 0 VEAPPAPKPEPK Unmodified 1258.6921 0.69213767 216 P09549 dedD Cell division protein DedD yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.237 13.077 3 0.00069155 3751 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 57.175 49.309 117140000 10250000 11613000 0 0 0 0 6858100 10057000 9689100 0 0 0 8753700 10415000 8656700 0 0 0 12882000 15700000 12263000 0 0 0 21124 216 20464 392042;392043;392044;392045;392046;392047;392048;392049;392050;392051;392052 240200;240201 240200 2 VEATLAPLALLTK Unmodified 1338.8123 0.8122528 1480 P37645 yhjG Uncharacterized protein YhjG yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.995 50.692 2 3.77E-05 20313 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 100.55 94.249 107160000 8948600 9179800 8789800 3510100 3796900 3275600 9718000 11932000 8537100 6362000 5628000 6837700 2334700 1731300 3281500 0 0 0 3248400 3634200 3692300 0 1533100 1193100 21125 1480 20465 392053;392054;392055;392056;392057;392058;392059;392060;392061;392062;392063;392064;392065;392066;392067;392068;392069;392070;392071;392072 240202;240203;240204;240205;240206 240203 5 VEATPQDIIAWTEGNALVATGSPFNPVVWK Unmodified 3209.6397 0.63971475 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 55.755 54.328 3 1.1529E-06 26665 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 85.881 79.914 287540000 18816000 0 13491000 0 0 0 0 0 0 0 0 0 33141000 44682000 33643000 0 0 0 41978000 55762000 46023000 0 0 0 21126 1283 20466 392073;392074;392075;392076;392077;392078;392079;392080 240207;240208;240209;240210;240211 240208 5 VEAVMAGMDITPER Unmodified 1517.7218 0.72179959 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.414 34.858 2 7.0191E-11 16639 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 165.66 154.13 444570000 65165000 57061000 56969000 0 0 0 33231000 28037000 33056000 0 0 0 31557000 27775000 23108000 0 0 0 31264000 26798000 30551000 0 0 0 21127 1349 20467 392081;392082;392083;392084;392085;392086;392087;392088;392089;392090;392091;392092 240212;240213;240214;240215;240216;240217;240218;240219;240220;240221;240222 240220 11 VEAVNMDER Unmodified 1061.4812 0.48115861 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 15.084 15.772 2 0.0036845 5248 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.676 75.262 80009000 27599000 29030000 20615000 0 0 0 0 2765600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21128 1181 20468 392093;392094;392095;392096 240223;240224 240224 0 VECEGQMNALSK Unmodified 1364.6064 0.60643548 854 P0AEF0 dnaC DNA replication protein DnaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.442 17.199 2 1.7736E-08 6010 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.71 178.41 87694000 11614000 11603000 13325000 0 0 0 8867300 7238100 5571800 0 0 0 4399100 4085500 4586600 0 0 0 5498000 6729500 4175700 0 0 0 21129 854 20469 392097;392098;392099;392100;392101;392102;392103;392104;392105;392106;392107;392108 240225;240226;240227;240228;240229;240230;240231 240230 5 VECLELDNLMETAYATAVSANFR Unmodified 2616.22 0.21998847 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.647 54.207 3 9.0645E-23 21816 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 178.32 174.86 624320000 33833000 37880000 33766000 10818000 12575000 16839000 18593000 13386000 17982000 12248000 12543000 14108000 43277000 39115000 42999000 0 0 0 65814000 81354000 78098000 15731000 13741000 9616700 21130 698 20470 392109;392110;392111;392112;392113;392114;392115;392116;392117;392118;392119;392120;392121;392122;392123;392124;392125;392126;392127;392128;392129 240232;240233;240234;240235;240236;240237;240238;240239 240233 8 VEDALHATR Unmodified 1010.5145 0.51450765 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 11.73 12.428 2 6.0305E-07 3269 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 179.68 79.226 11624000000 1108700000 922100000 886310000 14815000 14869000 19760000 994780000 1084300000 958580000 26621000 22580000 19815000 906780000 845870000 696460000 10337000 0 0 1034300000 990120000 1026100000 13997000 13960000 13146000 21131 240 20471 392130;392131;392132;392133;392134;392135;392136;392137;392138;392139;392140;392141;392142;392143;392144;392145;392146;392147;392148;392149;392150;392151;392152;392153;392154;392155 240240;240241;240242;240243;240244;240245;240246;240247;240248;240249;240250;240251;240252 240242 13 VEDVLFAMVK Unmodified 1149.6104 0.61038187 911 P0AF50 yjbR Uncharacterized protein YjbR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.47 44.986 2 0.00025996 21138 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 90.657 75.99 547240000 76654000 94524000 82747000 1482600 1098400 1331700 78119000 73222000 68890000 0 0 0 0 9481500 9515500 0 0 0 18195000 16733000 15241000 0 0 0 21132 911 20472 392156;392157;392158;392159;392160;392161;392162;392163;392164;392165;392166;392167;392168;392169;392170 240253;240254;240255;240256;240257;240258;240259;240260;240261;240262;240263;240264;240265 240263 11 VEDYQQIGPQGHFTLLR Unmodified 2000.0116 0.011574324 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.619 34.821 3 9.614E-07 16601 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 91.657 90.843 667630000 49471000 58665000 41896000 0 0 0 63697000 55451000 64291000 2194500 2342200 1864200 39653000 38423000 40915000 0 0 0 71169000 74715000 60822000 1190200 872800 0 21133 1145 20473 392171;392172;392173;392174;392175;392176;392177;392178;392179;392180;392181;392182;392183;392184;392185;392186;392187 240266;240267;240268;240269;240270;240271 240270 1 VEEDGSINDDYR Unmodified 1410.5899 0.58991702 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.074 17.782 2 1.3014E-12 6464 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 201.1 196.49 104340000 6702300 6585600 6210300 0 0 0 10861000 9617900 8441500 0 0 0 11974000 10359000 8913500 0 0 0 8306800 8586800 7782300 0 0 0 21134 1956 20474 392188;392189;392190;392191;392192;392193;392194;392195;392196;392197;392198;392199 240272;240273;240274;240275;240276;240277;240278;240279;240280 240274 9 VEEDRPTLGFDIDGVVIK Unmodified 2001.0419 0.0418714 1102 P15042 ligA DNA ligase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 46.262 44.957 2;3 7.8534E-15 22401 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 130 121.2 484470000 21318000 32833000 23003000 0 0 0 54023000 41819000 44071000 0 0 0 37563000 28183000 26598000 14311000 19359000 14063000 48527000 41360000 37435000 0 0 0 21135 1102 20475 392200;392201;392202;392203;392204;392205;392206;392207;392208;392209;392210;392211;392212;392213;392214;392215;392216;392217;392218;392219;392220;392221;392222;392223;392224;392225 240281;240282;240283;240284;240285;240286;240287;240288;240289;240290;240291;240292;240293 240284 13 VEEEGEVR Unmodified 945.44034 0.44033966 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 11.017 11.791 2 0.0023006 2981 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.64 81.721 526620000 59313000 56519000 68300000 0 0 0 59488000 49132000 53610000 0 0 0 0 0 0 0 0 0 67795000 60437000 52026000 0 0 0 21136 1503 20476 392226;392227;392228;392229;392230;392231;392232;392233;392234;392235 240294;240295;240296;240297 240295 4 VEEFPSEPPFDGVISR Unmodified 1803.8679 0.86792978 281 P0A6U5 rsmG Ribosomal RNA small subunit methyltransferase G yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.615 44.175 2 4.3084E-08 21779 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.13 127.12 153540000 9237900 9179600 8925400 0 0 0 14439000 15789000 15630000 0 0 0 13417000 13323000 9098300 0 0 0 11974000 16834000 15690000 0 0 0 21137 281 20477 392236;392237;392238;392239;392240;392241;392242;392243;392244;392245;392246;392247 240298;240299;240300;240301;240302;240303;240304;240305;240306;240307 240300 10 VEEHIADALEK Unmodified 1252.6299 0.62993134 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 18.681 19.137 2;3 2.48E-09 7295 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 204.5 183.05 1646800000 314360000 279620000 292780000 1930700 1783500 978060 122800000 151090000 128720000 4502500 4164600 4690000 45359000 37087000 37625000 0 0 0 73304000 75029000 71007000 0 0 0 21138 1258 20478 392248;392249;392250;392251;392252;392253;392254;392255;392256;392257;392258;392259;392260;392261;392262;392263;392264;392265;392266;392267;392268;392269;392270;392271;392272;392273;392274;392275;392276;392277;392278;392279;392280;392281;392282 240308;240309;240310;240311;240312;240313;240314;240315;240316;240317;240318;240319;240320;240321;240322;240323;240324;240325 240312 18 VEELQNAEFDR Unmodified 1348.6259 0.62590859 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.887 22.99 2 3.5693E-14 10087 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 208.25 197.42 155810000 11268000 8902000 7596700 0 0 0 12711000 14715000 12348000 0 0 0 15246000 11037000 12393000 0 0 0 16455000 17857000 15284000 0 0 0 21139 1564 20479 392283;392284;392285;392286;392287;392288;392289;392290;392291;392292;392293;392294 240326;240327;240328;240329;240330;240331;240332 240326 7 VEELQNAEFDRK Unmodified 1476.7209 0.72087161 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.202 17.884 3 0.018511 6670 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 31.35 2.5444 96870000 5413200 4571200 5822000 0 0 0 11349000 5583400 7241400 0 0 0 7380000 5220900 8596100 0 0 0 15273000 11848000 8572500 0 0 0 21140 1564 20480 392295;392296;392297;392298;392299;392300;392301;392302;392303;392304;392305;392306 240333 240333 1 VEEQNQR Unmodified 901.42536 0.42535829 1295 P27249 glnD Bifunctional uridylyltransferase/uridylyl-removing enzyme;[Protein-PII] uridylyltransferase;[Protein-PII]-UMP uridylyl-removing enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 6.7136 7.4636 2 1.2665E-05 1394 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 181.42 122.76 23147000 7632700 7583100 7518400 0 0 0 412350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21141 1295 20481 392307;392308;392309;392310 240334;240335;240336 240334 3 VEESLGYNAIAAGFQGQR Unmodified 1908.933 0.93298965 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 40.613 38.989 2 8.7578E-10 18832 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.36 122.76 61765000 10432000 7332200 12090000 0 0 0 5142100 0 3954200 0 0 0 4490300 5237600 3676300 0 0 0 3868100 0 5542100 0 0 0 21142 1758 20482 392311;392312;392313;392314;392315;392316;392317;392318;392319;392320 240337;240338 240337 2 VEETEDADAFR Unmodified 1280.5521 0.55207495 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.124 19.484 2 4.5638E-14 7046 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 203.35 172.27 3521700000 268380000 217640000 218560000 2403700 2214400 2348200 271130000 271140000 239550000 5175600 3761600 0 335990000 320130000 306940000 1807500 1658500 0 323680000 371690000 350120000 2409700 2475200 2506100 21143 1388 20483 392321;392322;392323;392324;392325;392326;392327;392328;392329;392330;392331;392332;392333;392334;392335;392336;392337;392338;392339;392340;392341;392342 240339;240340;240341;240342;240343;240344;240345;240346;240347;240348;240349;240350;240351;240352;240353;240354 240354 15 VEFEITNGAK Unmodified 1106.5608 0.56078914 495 P0A972 cspE Cold shock-like protein CspE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 2 1 1 1 1 1 2 1 2 24.986 24.153 2 1.0141E-08 10581 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 182.53 123.55 7414400000 190360000 183480000 175500000 0 3402500 0 664200000 600440000 660240000 0 0 0 842480000 769800000 647070000 5720700 3324600 3382400 864700000 903900000 896390000 0 0 0 21144 495 20484 392343;392344;392345;392346;392347;392348;392349;392350;392351;392352;392353;392354;392355;392356;392357;392358;392359;392360;392361;392362 240355;240356;240357;240358;240359;240360;240361;240362;240363;240364;240365;240366 240362 10 VEFFEGNFTEYEEYK Unmodified 1929.8309 0.83087557 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.218 45.828 2 4.7686E-15 22769 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 190.15 187.91 92743000 6425500 6612100 6655900 0 0 0 8369300 7260800 6663600 0 0 0 8303900 6253300 8653500 0 0 0 9231400 8945200 9368600 0 0 0 21145 561 20485 392363;392364;392365;392366;392367;392368;392369;392370;392371;392372;392373;392374 240367;240368;240369;240370;240371;240372;240373;240374;240375 240367 9 VEFMWDDYHR Unmodified 1396.587 0.58702067 1560 P42641 obgE GTPase ObgE/CgtA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.694 33.246 3 0.0018065 15811 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 61.353 61.353 68635000 12028000 10015000 7156000 0 0 0 2963000 4387500 3554700 0 0 0 4293900 3240100 2498200 0 0 0 8343100 5040400 5115000 0 0 0 21146 1560 20486 392375;392376;392377;392378;392379;392380;392381;392382;392383;392384;392385;392386 240376;240377;240378 240377 3 VEGDTKPELELTLK Unmodified 1570.8454 0.84540342 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 2 28.902 27.599 2;3 1.1415E-10 12572 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 191.48 183.91 1761500000 308500000 251460000 252900000 1025900 856250 654710 72671000 81462000 83990000 3328900 0 2332800 100410000 120340000 98693000 0 0 954780 131860000 136020000 114020000 0 0 0 21147 377 20487 392387;392388;392389;392390;392391;392392;392393;392394;392395;392396;392397;392398;392399;392400;392401;392402;392403;392404;392405;392406;392407;392408;392409;392410;392411;392412;392413;392414;392415;392416 240379;240380;240381;240382;240383;240384;240385;240386;240387;240388;240389;240390;240391;240392;240393;240394;240395;240396;240397;240398;240399;240400;240401 240395 23 VEGDTLPSSK Unmodified 1031.5135 0.5135046 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.917 13.548 2 0.00056666 3977 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 94.692 77.306 180500000 31452000 0 0 0 0 0 22246000 18209000 28511000 5534200 4014900 3552900 0 17379000 0 0 0 0 18101000 15697000 15802000 0 0 0 21148 139 20488 392417;392418;392419;392420;392421;392422;392423;392424;392425;392426;392427 240402;240403;240404;240405;240406 240405 5 VEGEAVAR Unmodified 829.42938 0.42938104 1102 P15042 ligA DNA ligase yes yes 0 0 0 By MS/MS 1 11.091 12.144 2 0.015927 2890 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 69.383 2.3486 39459000 0 0 0 0 0 0 0 0 0 0 0 0 0 39459000 0 0 0 0 0 0 0 0 0 0 21149 1102 20489 392428 240407 240407 1 VEGGQHLNVNVLR Unmodified 1433.7739 0.77391024 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 2 2 9 8 7 2 2 2 10 8 7 1 1 1 4 4 5 2 2 2 23.979 23.514 2;3 9.6587E-32 9065 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 266.26 212.51 53464000000 1811500000 1959700000 1742600000 30445000 32364000 37756000 8929700000 8462200000 8572400000 244670000 248900000 178270000 4044400000 3993100000 4167900000 13349000 2336000 2031900 3069900000 3050000000 2769400000 23238000 35557000 42082000 21150 1717 20490 392429;392430;392431;392432;392433;392434;392435;392436;392437;392438;392439;392440;392441;392442;392443;392444;392445;392446;392447;392448;392449;392450;392451;392452;392453;392454;392455;392456;392457;392458;392459;392460;392461;392462;392463;392464;392465;392466;392467;392468;392469;392470;392471;392472;392473;392474;392475;392476;392477;392478;392479;392480;392481;392482;392483;392484;392485;392486;392487;392488;392489;392490;392491;392492;392493;392494;392495;392496;392497;392498;392499;392500;392501;392502;392503;392504;392505;392506;392507;392508;392509;392510;392511;392512;392513;392514;392515;392516;392517;392518;392519;392520 240408;240409;240410;240411;240412;240413;240414;240415;240416;240417;240418;240419;240420;240421;240422;240423;240424;240425;240426;240427;240428;240429;240430;240431;240432;240433;240434;240435;240436;240437;240438;240439;240440;240441;240442;240443;240444;240445;240446;240447;240448;240449;240450;240451;240452;240453;240454;240455;240456;240457;240458;240459;240460;240461;240462;240463;240464;240465;240466;240467;240468;240469;240470;240471;240472;240473;240474;240475;240476;240477;240478;240479;240480;240481;240482;240483;240484;240485;240486;240487;240488;240489;240490;240491;240492;240493;240494;240495;240496;240497;240498;240499;240500;240501;240502;240503;240504;240505;240506;240507;240508;240509 240418 95 VEGGQHLNVNVLRR Unmodified 1589.875 0.87502126 1717 P68066 grcA Autonomous glycyl radical cofactor yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 2 2 2 2 1 1 2 2 2 2 2 1 1 2 1 1 1 17.202 17.641 3;4 0.0088973 5324 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 50.145 20.817 521460000 11178000 8854300 6292100 3270200 3149300 2518300 96582000 101590000 106160000 7432600 5796000 4246500 28680000 37221000 34349000 3439400 4280400 3528100 14238000 19401000 15695000 1208200 1396600 956150 21151 1717 20491 392521;392522;392523;392524;392525;392526;392527;392528;392529;392530;392531;392532;392533;392534;392535;392536;392537;392538;392539;392540;392541;392542;392543;392544;392545;392546;392547;392548;392549;392550;392551;392552;392553;392554;392555 240510;240511;240512;240513;240514 240511 5 VEGGVVDLNTLK Unmodified 1242.682 0.68196691 68 P02413 rplO 50S ribosomal protein L15 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.5 31.096 2 6.105E-17 14703 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 213.8 198.55 4888800000 0 0 591360000 33467000 32172000 28914000 321100000 273900000 252940000 62397000 56788000 49080000 379550000 386200000 376510000 48736000 33472000 34441000 596710000 572590000 584100000 60106000 59090000 55178000 21152 68 20492 392556;392557;392558;392559;392560;392561;392562;392563;392564;392565;392566;392567;392568;392569;392570;392571;392572;392573;392574;392575;392576;392577 240515;240516;240517;240518;240519;240520;240521;240522;240523;240524;240525;240526;240527;240528;240529;240530;240531;240532;240533 240526 19 VEGISALR Unmodified 843.48142 0.48141661 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 21.153 21.431 2 0.0003557 8517 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.85 95.093 610570000 49908000 44222000 34002000 0 0 0 51398000 55061000 43189000 0 0 557070 57948000 46992000 45713000 0 0 0 63669000 61064000 56843000 0 0 0 21153 882 20493 392578;392579;392580;392581;392582;392583;392584;392585;392586;392587;392588;392589;392590 240534;240535;240536;240537;240538;240539;240540;240541;240542;240543;240544;240545 240539 12 VEGISALRDESDKDGMR Unmodified 1876.8949 0.89488959 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 2 2 2 2 1 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 19.89 20.153 3;4 8.386E-07 8117 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.96 79.802 885740000 61372000 61731000 62802000 0 4406200 2396500 83596000 67500000 56326000 15360000 14172000 15214000 36265000 38782000 70228000 0 0 0 88462000 91312000 93575000 7155400 7356100 7727700 21154 882 20494 392591;392592;392593;392594;392595;392596;392597;392598;392599;392600;392601;392602;392603;392604;392605;392606;392607;392608;392609;392610;392611;392612;392613;392614;392615;392616;392617;392618;392619;392620;392621;392622;392623;392624;392625;392626;392627 240546;240547;240548;240549;240550;240551;240552;240553;240554;240555;240556;240557 240550 12 VEGKDDVTGEELTTR Unmodified 1647.7952 0.79515877 1733 P69441 adk Adenylate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 1 15.755 16.365 2;3 1.7823E-35 5612 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 261.63 233.85 5177600000 355010000 380940000 323130000 617670 805560 757810 462010000 514370000 450320000 2451400 2904600 1638900 451960000 378530000 365690000 2528400 4516700 4688300 486750000 485010000 485160000 10157000 4319200 3343000 21155 1733 20495 392628;392629;392630;392631;392632;392633;392634;392635;392636;392637;392638;392639;392640;392641;392642;392643;392644;392645;392646;392647;392648;392649;392650;392651;392652;392653;392654;392655;392656;392657;392658;392659;392660;392661;392662;392663;392664;392665 240558;240559;240560;240561;240562;240563;240564;240565;240566;240567;240568;240569;240570;240571;240572;240573;240574;240575;240576;240577;240578;240579;240580;240581;240582 240570 25 VEGMSLEEAR Unmodified 1119.523 0.52302343 552 P0A9S1 fucO Lactaldehyde reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 21.316 21.469 2 9.2376E-05 8908 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 107.15 82.231 60135000 0 0 0 0 0 0 0 16492000 22515000 0 0 0 0 0 0 0 0 0 0 21128000 0 0 0 0 21156 552 20496 392666;392667;392668;392669 240583;240584 240583 2 VEGMTFLRPVAVGDVVCCYAR Unmodified 2398.1596 0.15957724 474 P0A8Z0 yciA Acyl-CoA thioester hydrolase YciA yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 47.27 45.83 3 1.6996E-10 22176 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 124.86 116.15 360090000 23661000 31784000 23203000 0 0 0 26892000 26197000 22679000 0 1431300 0 25375000 28692000 41472000 0 0 0 35670000 36364000 36671000 0 0 0 21157 474 20497 392670;392671;392672;392673;392674;392675;392676;392677;392678;392679;392680;392681;392682 240585;240586;240587;240588;240589 240589 5 VEGTASQGQK Unmodified 1003.4934 0.49343786 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4.7347 5.6228 2 0.00031842 1056 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.87 70.768 162900000 0 0 0 0 0 0 28715000 29533000 32741000 0 0 0 13311000 9332800 13301000 0 0 0 10655000 12815000 12500000 0 0 0 21158 1507 20498 392683;392684;392685;392686;392687;392688;392689;392690;392691 240590;240591 240590 2 VEGTVLNQR Unmodified 1014.5458 0.54580778 1611 P54901 csiE Stationary phase-inducible protein CsiE yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.087 14.902 2 5.653E-05 4756 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.34 74.087 172850000 10499000 12340000 10728000 0 0 0 20149000 19786000 19024000 0 0 6540500 10873000 9096300 8799000 0 0 0 17784000 13502000 13730000 0 0 0 21159 1611 20499 392692;392693;392694;392695;392696;392697;392698;392699;392700;392701;392702;392703;392704 240592;240593 240592 2 VEGWENAEAAK Unmodified 1202.5568 0.5567664 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.409 18.867 2 0.00011364 6919 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.83 112.66 3572500000 214990000 174850000 172350000 3315600 3503600 3189500 361840000 338220000 312330000 3807900 2479400 2321200 331140000 304640000 273920000 0 0 0 361000000 348160000 359110000 0 0 1352900 21160 325 20500 392705;392706;392707;392708;392709;392710;392711;392712;392713;392714;392715;392716;392717;392718;392719;392720;392721;392722;392723 240594;240595;240596;240597;240598;240599;240600;240601;240602;240603;240604;240605 240602 12 VEGWENAEAAKAEIVASFER Unmodified 2205.0702 0.070211415 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 45.332 43.975 3 2.4797E-07 20584 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 106.03 102.53 124250000 9859200 6882600 6821100 0 0 0 0 13857000 0 0 0 0 14385000 13924000 8702800 0 0 0 17222000 15919000 16676000 0 0 0 21161 325 20501 392724;392725;392726;392727;392728;392729;392730;392731;392732;392733 240606;240607;240608 240607 3 VEHADEYDLWGSR Unmodified 1575.6954 0.69538514 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 28.159 26.944 2;3 1.6025E-08 12446 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 181.4 181.4 312540000 36990000 30785000 28843000 0 0 0 16210000 17950000 10910000 0 0 0 20673000 21456000 20437000 0 0 0 37353000 40914000 30015000 0 0 0 21162 863 20502 392734;392735;392736;392737;392738;392739;392740;392741;392742;392743;392744;392745;392746;392747;392748;392749;392750;392751;392752;392753;392754;392755;392756 240609;240610;240611;240612;240613;240614;240615;240616;240617;240618;240619 240609 11 VEHEDIAK Unmodified 939.46616 0.46616048 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.353 11.169 2 0.00027734 2521 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.38 108.84 1293900000 141740000 120100000 109270000 0 0 0 135730000 135790000 120710000 0 0 0 90456000 90394000 74666000 0 0 0 95330000 86972000 92788000 0 0 0 21163 94 20503 392757;392758;392759;392760;392761;392762;392763;392764;392765;392766;392767;392768 240620;240621;240622;240623;240624;240625;240626;240627;240628;240629 240625 10 VEHEDIAKR Unmodified 1095.5673 0.5672715 94 P04825 pepN Aminopeptidase N yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 10.007 10.829 3 0.031965 2256 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 48.423 38.643 75771000 21689000 0 1287800 0 0 0 0 0 0 0 0 0 1989000 0 0 0 0 0 0 21276000 29530000 0 0 0 21164 94 20504 392769;392770;392771;392772;392773;392774 240630;240631;240632 240631 2 VEHIQILACGTSYNSGMVSR Unmodified 2221.062 0.06197169 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 3 1 1 1 2 2 2 1 2 4 2 2 1 3 31.806 30.43 2;3 3.6839E-18 13711 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 161.08 160.23 1544600000 5515600 109300000 97912000 1031500 1022700 940800 194170000 172050000 147370000 0 0 1867100 146640000 125450000 139100000 0 0 0 201910000 11167000 189130000 0 0 0 21165 1137 20505 392775;392776;392777;392778;392779;392780;392781;392782;392783;392784;392785;392786;392787;392788;392789;392790;392791;392792;392793;392794;392795;392796;392797;392798;392799;392800;392801;392802;392803;392804 240633;240634;240635;240636;240637;240638;240639;240640;240641;240642;240643;240644;240645;240646 240644 14 VEHYEIASYGTLATLAEQLGYR Unmodified 2483.2333 0.233254 1177 P21362 yciF Protein YciF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 53.468 52.062 2;3 5.9816E-63 25424 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 360.44 354.78 669070000 235780000 238080000 195200000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21166 1177 20506 392805;392806;392807;392808;392809;392810 240647;240648;240649;240650;240651 240651 5 VEIDPMGNVLGYIGHGPR Unmodified 1922.9673 0.96726667 1706 P65807 ygeY Uncharacterized protein YgeY yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 46.812 45.576 3 0.16825 21212 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 9.0964 6.7096 139970000 21090000 18546000 19201000 0 0 0 0 0 0 0 0 0 30241000 25805000 25089000 0 0 0 0 0 0 0 0 0 21167 1706 20507 392811;392812;392813;392814;392815;392816 240652 240652 1 VEIGACTTIDR Unmodified 1233.6023 0.60233638 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 0 By MS/MS 1 23.357 22.211 2 0.013527 7648 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 59.542 20.52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21168 1185 20508 392817 240653 240653 1 VEIGPIDR Unmodified 897.49198 0.4919813 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 24.14 23.058 2 0.0066875 10080 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 84.568 48.382 119520000 0 0 0 0 0 0 9134200 7157700 7137800 2030100 0 0 13687000 13831000 0 0 0 0 22084000 21844000 20436000 1338400 834920 0 21169 1230 20509 392818;392819;392820;392821;392822;392823;392824;392825;392826;392827;392828 240654;240655;240656 240654 2 VEIMSASEGEHGGYK Unmodified 1592.7141 0.71407167 345 P0A7I0 prfA Peptide chain release factor 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 2 2 2 1 2 2 2 2 2 2 16.62 17.342 2;3 9.3406E-05 6202 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 79.81 78.231 218070000 19167000 20070000 13389000 0 0 0 16611000 21112000 13087000 1862500 0 0 20129000 17564000 20016000 0 0 0 15998000 21861000 17204000 0 0 0 21170 345 20510 392829;392830;392831;392832;392833;392834;392835;392836;392837;392838;392839;392840;392841;392842;392843;392844;392845;392846;392847;392848;392849;392850 240657;240658;240659;240660;240661;240662;240663 240659 4 VEIPIDAPGIDALLR Unmodified 1590.8981 0.8981077 1665 P63417 yhbS Uncharacterized N-acetyltransferase YhbS yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.619 53.171 2 4.2661E-15 25050 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 191.52 188.78 871490000 57075000 56743000 53753000 0 0 0 85094000 68971000 87213000 0 0 0 94564000 86946000 92721000 0 0 0 70351000 56734000 61324000 0 0 0 21171 1665 20511 392851;392852;392853;392854;392855;392856;392857;392858;392859;392860;392861;392862 240664;240665;240666;240667;240668;240669;240670;240671;240672;240673 240673 10 VEITGPVER Unmodified 998.53966 0.53965977 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 19.297 19.801 2 6.0305E-07 7563 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 179.68 153.08 822780000 221160000 177810000 171450000 0 0 492290 51771000 49842000 48622000 0 0 0 15253000 15231000 13474000 0 0 0 17903000 20495000 19266000 0 0 0 21172 195 20512 392863;392864;392865;392866;392867;392868;392869;392870;392871;392872;392873;392874;392875 240674;240675;240676;240677;240678;240679;240680 240678 7 VEIYRPLIADPK Unmodified 1412.8028 0.80275075 1606 P52119 ratB UPF0125 protein RatB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 28.71 27.615 3 0.15768 12785 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 16.137 10.055 120420000 23016000 19603000 10500000 0 0 0 0 0 0 0 0 0 11321000 10360000 13923000 0 0 0 14800000 16900000 0 0 0 0 21173 1606 20513 392876;392877;392878;392879;392880;392881;392882;392883 240681;240682;240683 240681 3 VELCAAPK Unmodified 886.45824 0.45823833 1715 P67826 cutC Copper homeostasis protein CutC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.065 15.853 2 0.01188 5076 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 76.035 64.313 138100000 9055800 10196000 9806100 0 0 0 16213000 13193000 14309000 0 0 0 13657000 14344000 0 0 0 0 12658000 12935000 11728000 0 0 0 21174 1715 20514 392884;392885;392886;392887;392888;392889;392890;392891;392892;392893;392894;392895 240684;240685;240686 240684 3 VELENGHVVTAHISGK Unmodified 1688.8846 0.8845829 1727 P69222 infA Translation initiation factor IF-1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.484 17.221 3 1.609E-06 6207 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.829 72.911 294200000 33626000 44803000 38207000 2692000 2536900 2379700 16353000 17726000 16588000 0 1509900 0 16179000 17352000 14297000 0 0 0 25711000 22644000 21594000 0 0 0 21175 1727 20515 392896;392897;392898;392899;392900;392901;392902;392903;392904;392905;392906;392907;392908;392909;392910;392911 240687;240688;240689;240690;240691;240692;240693;240694;240695 240688 9 VELENVLLHK Unmodified 1192.6816 0.68157298 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 31.25 29.781 2;3 2.0063E-06 13885 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 180.44 176.85 1093400000 35551000 37371000 31119000 804780 1541500 845860 99155000 99143000 92714000 9915200 5544000 4771300 63221000 72157000 71643000 1218900 1196700 1433700 134370000 127220000 131570000 21347000 22851000 26655000 21176 205 20516 392912;392913;392914;392915;392916;392917;392918;392919;392920;392921;392922;392923;392924;392925;392926;392927;392928;392929;392930;392931;392932;392933;392934;392935;392936;392937;392938;392939;392940;392941;392942;392943;392944;392945;392946;392947;392948;392949;392950;392951;392952 240696;240697;240698;240699;240700;240701;240702;240703;240704;240705;240706;240707;240708;240709;240710;240711;240712;240713;240714;240715;240716;240717;240718;240719;240720;240721;240722 240712 26 VELFDEEVER Unmodified 1263.5983 0.59829686 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 33.639 32.198 2 1.3774E-05 15177 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 152.34 134.03 225090000 43425000 40533000 37232000 0 0 0 5546800 29950000 24036000 0 0 0 15528000 14855000 13983000 0 0 0 0 0 0 0 0 0 21177 426 20517 392953;392954;392955;392956;392957;392958;392959;392960;392961;392962 240723;240724;240725;240726;240727;240728;240729;240730;240731 240728 9 VELLDSAR Unmodified 901.4869 0.48689592 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 22.375 22.289 2 0.00049564 9011 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 135.77 103.65 276850000 57319000 60254000 52090000 34908000 36535000 32384000 0 3355300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21178 151 20518 392963;392964;392965;392966;392967;392968;392969 240732;240733;240734;240735;240736;240737 240737 6 VELLDSARK Unmodified 1029.5819 0.58185893 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 14.743 15.73 2 0.0338 3933 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 60.91 54.461 14422000 0 0 0 5476000 4794300 4151900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21179 151 20519 392970;392971;392972 240738;240739;240740 240738 3 VELLIGQTLEVDCNLHR Unmodified 2008.0412 0.041159893 1212 P23827 eco Ecotin yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 3 3 3 2 2 2 1 43.509 41.918 2;3 4.5607E-19 20203 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 186.68 181.13 665410000 63761000 0 20254000 0 0 0 113800000 98033000 79631000 0 0 0 48650000 51035000 38012000 0 0 0 45960000 62315000 43965000 0 0 0 21180 1212 20520 392973;392974;392975;392976;392977;392978;392979;392980;392981;392982;392983;392984;392985;392986;392987;392988;392989;392990;392991;392992;392993;392994;392995;392996;392997;392998 240741;240742;240743;240744;240745;240746;240747;240748;240749;240750;240751;240752;240753;240754;240755;240756;240757;240758;240759;240760;240761;240762;240763;240764;240765 240759 21 VELLPENSEFKPIVVDLR Unmodified 2096.1518 0.1517562 330 P0A7C2 lexA LexA repressor yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.668 47.337 3 1.2559E-05 22237 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 87.16 82.808 163260000 19187000 14825000 15344000 0 0 0 14480000 13647000 13124000 0 0 0 11361000 7590200 8852000 0 0 0 17219000 15702000 11927000 0 0 0 21181 330 20521 392999;393000;393001;393002;393003;393004;393005;393006;393007;393008;393009;393010 240766;240767;240768;240769;240770 240769 4 VELPGGR Unmodified 726.40244 0.40243801 254 P0A6K1 dapF Diaminopimelate epimerase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1 2 1 2 1 1 1 2 1 2 1 1 1 2 2 2 1 1 1 14.228 14.882 2 0.0085269 5782 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.734 67.032 5862300000 46635000 45127000 39321000 408090 439150 440720 45836000 40394000 49740000 554860000 593710000 734510000 47352000 8353000 37842000 762810000 591980000 597990000 59141000 57069000 48715000 577350000 450170000 472080000 21182 254 20522 393011;393012;393013;393014;393015;393016;393017;393018;393019;393020;393021;393022;393023;393024;393025;393026;393027;393028;393029;393030;393031;393032;393033;393034;393035;393036;393037;393038;393039;393040;393041;393042;393043;393044 240771;240772;240773;240774;240775;240776;240777;240778;240779;240780;240781;240782;240783;240784 240772 13 VELQALTTSDFER Unmodified 1507.7518 0.75183739 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 2 2 2 1 1 1 2 2 1 1 1 1 2 2 2 1 1 38.729 37.089 2;3 5.4727E-09 13732 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 169.52 159.29 1891100000 121130000 100690000 97408000 8538000 9280700 11803000 162670000 157130000 168430000 39394000 37209000 38293000 125430000 113890000 109620000 10719000 5441500 6265900 185120000 190000000 160200000 21471000 10949000 0 21183 245 20523 393045;393046;393047;393048;393049;393050;393051;393052;393053;393054;393055;393056;393057;393058;393059;393060;393061;393062;393063;393064;393065;393066;393067;393068;393069;393070;393071;393072;393073;393074;393075;393076 240785;240786;240787;240788;240789;240790;240791;240792;240793;240794;240795;240796;240797;240798;240799;240800;240801;240802;240803;240804;240805;240806 240785 15 VELQTLVNEITDSETYK Unmodified 1980.9892 0.98916713 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 53.322 51.919 2 1.0212E-13 25559 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.08 143.7 22491000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9385400 8536800 4569200 0 0 0 21184 193 20524 393077;393078;393079 240807 240807 1 VEMHFLPDIYVPCDQCK Unmodified 2149.9635 0.9635032 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.315 43.93 3 4.6333E-05 16450 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 81.428 78.419 492310000 42264000 37786000 41701000 0 0 0 35061000 25593000 25398000 7151400 3360800 4960500 23406000 26131000 18831000 43361000 28540000 34712000 30623000 28814000 28036000 3900000 2684400 0 21185 222 20525 393080;393081;393082;393083;393084;393085;393086;393087;393088;393089;393090;393091;393092;393093;393094;393095;393096;393097;393098;393099 240808;240809;240810;240811;240812;240813;240814;240815 240808 6 VEMNVQYR Unmodified 1037.4964 0.49641475 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.995 19.321 2 1.0769E-05 6136 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 178.84 149.5 742360000 17043000 16028000 13201000 20039000 17601000 17445000 54141000 58588000 51650000 37351000 30352000 27744000 37117000 38755000 31509000 5542100 3396500 3392300 67912000 62768000 63778000 22002000 22758000 22246000 21186 649 20526 393100;393101;393102;393103;393104;393105;393106;393107;393108;393109;393110;393111;393112;393113;393114;393115;393116;393117;393118;393119;393120;393121;393122;393123 240816;240817;240818;240819;240820;240821;240822;240823;240824;240825;240826;240827;240828;240829;240830;240831;240832;240833 240816 17 VEMVQIVRPEDSMAALEEMTGHAEK Unmodified 2799.3241 0.32413597 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 47.1 45.71 3;4 3.2067E-50 22571 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 230.91 218.97 5529800000 431860000 423420000 327830000 0 0 0 517220000 487350000 471720000 0 0 0 484830000 485700000 506840000 0 0 0 468650000 457600000 466770000 0 0 0 21187 441 20527 393124;393125;393126;393127;393128;393129;393130;393131;393132;393133;393134;393135;393136;393137;393138;393139;393140;393141;393142;393143;393144;393145;393146;393147 240834;240835;240836;240837;240838;240839;240840;240841;240842;240843;240844;240845;240846;240847;240848;240849;240850;240851;240852;240853;240854;240855;240856;240857 240839 24 VENALAALR Unmodified 955.54508 0.5450795 348 P0A7J0 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 2 2 2 2 2 2 2 2 26.646 25.54 2 4.5389E-06 11574 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 174.27 142.21 2333500000 87719000 75596000 83349000 0 554210 2030700 310480000 305780000 302820000 0 0 0 198740000 175930000 180150000 0 0 0 218330000 213780000 178200000 0 0 0 21188 348 20528 393148;393149;393150;393151;393152;393153;393154;393155;393156;393157;393158;393159;393160;393161;393162;393163;393164;393165;393166;393167;393168;393169;393170;393171 240858;240859;240860;240861;240862;240863;240864;240865;240866;240867;240868;240869;240870 240861 12 VENASPK Unmodified 743.38137 0.38136821 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 5.3926 6.2444 2 0.006056 1062 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 97.068 83.292 174740000 30715000 34130000 27071000 0 288030 0 22647000 0 22182000 0 0 0 0 11543000 0 0 0 0 8366100 9601800 8199100 0 0 0 21189 290 20529 393172;393173;393174;393175;393176;393177;393178;393179;393180;393181 240871;240872 240871 2 VENASPKDE Unmodified 987.4509 0.45090434 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 8.6778 9.2556 2 0.0002627 2057 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 130.75 127.29 298770000 26251000 8554200 14049000 0 0 599510 36593000 29931000 28138000 9870900 8413800 11283000 0 131440 6115900 27214000 40575000 34356000 7941100 8751600 0 0 0 0 21190 290 20530 393182;393183;393184;393185;393186;393187;393188;393189;393190;393191;393192;393193;393194;393195;393196;393197;393198 240873;240874;240875;240876;240877;240878;240879;240880;240881;240882;240883;240884;240885;240886 240875 14 VENDEDAAK Unmodified 989.43017 0.4301689 528 P0A9J6 rbsK Ribokinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 4.9488 5.8335 2 0.00061972 1170 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 105.57 100.83 117110000 0 0 0 0 0 0 11468000 9530900 8125400 0 0 0 18730000 17518000 0 0 0 0 20511000 14554000 16668000 0 0 0 21191 528 20531 393199;393200;393201;393202;393203;393204;393205;393206 240887;240888;240889;240890;240891 240889 5 VENGNIILHTNR Unmodified 1378.7317 0.73171107 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 3 2 2 3 3 3 3 17.243 17.935 2;3 4.3152E-12 5978 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 196.48 168.74 652210000 59660000 55913000 59680000 0 0 0 41308000 57204000 58335000 0 0 0 38736000 34470000 38378000 0 0 0 75210000 63438000 69880000 0 0 0 21192 543 20532 393207;393208;393209;393210;393211;393212;393213;393214;393215;393216;393217;393218;393219;393220;393221;393222;393223;393224;393225;393226;393227;393228;393229;393230;393231;393232;393233;393234;393235;393236 240892;240893;240894;240895;240896;240897;240898;240899;240900;240901;240902;240903;240904;240905;240906;240907;240908;240909;240910;240911;240912;240913;240914 240897 22 VENMEQYYDK Unmodified 1317.5547 0.55471749 667 P0ABK9 nrfA Cytochrome c-552 yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 20.725 21.308 2 3.2903E-05 8157 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 120.99 111.21 13413000 0 0 0 0 0 0 0 0 0 0 0 0 0 5394800 8017800 0 0 0 0 0 0 0 0 0 21193 667 20533 393237;393238;393239 240915;240916 240915 2 VEPEALTLLAQQAFHDASFMLR Unmodified 2486.2628 0.26277999 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 55.507 53.994 3 4.529E-15 25615 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 136.14 129.48 241040000 0 0 0 0 0 0 43149000 39954000 37618000 2920000 0 0 36980000 35568000 36933000 0 0 0 7915000 0 0 0 0 0 21194 1097 20534 393240;393241;393242;393243;393244;393245;393246;393247 240917;240918;240919;240920 240920 4 VEPEALTLLAQQAFHDASFMLRPAHQK Unmodified 3047.5651 0.56511002 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 54.151 52.709 5 6.2896E-08 25036 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.88 107.87 222050000 0 0 2739500 0 0 0 40948000 33547000 37679000 0 0 0 30480000 26149000 28497000 0 0 0 7403600 8875400 5730100 0 0 0 21195 1097 20535 393248;393249;393250;393251;393252;393253;393254;393255;393256;393257 240921;240922 240921 2 VEPRPNTVNVVPGK Unmodified 1504.8362 0.83617614 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 2 1 16.75 17.164 2;3 0.00081299 4460 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 73.499 56.868 112960000 0 0 0 29558000 33739000 33166000 0 0 0 2160200 1110800 0 0 0 0 0 0 1428700 0 0 0 4057300 3917400 3826000 21196 1904 20536 393258;393259;393260;393261;393262;393263;393264;393265;393266;393267;393268;393269;393270 240923;240924;240925;240926;240927 240927 5 VEQAFELTDASAER Unmodified 1564.7369 0.73691561 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 2 2 2 1 2 3 2 30.141 28.825 2;3 2.7906E-26 13746 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 227.31 217.62 7168000000 1063500000 971260000 847130000 0 0 0 379430000 395990000 377110000 0 0 0 361460000 370850000 336730000 0 0 761030 649940000 740210000 673580000 0 0 0 21197 1444 20537 393271;393272;393273;393274;393275;393276;393277;393278;393279;393280;393281;393282;393283;393284;393285;393286;393287;393288;393289;393290;393291;393292;393293;393294;393295;393296;393297 240928;240929;240930;240931;240932;240933;240934;240935;240936;240937;240938;240939;240940;240941;240942;240943;240944;240945 240928 18 VEQALMVTIAGIAAGMR Unmodified 1729.9219 0.92189638 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 54.956 53.496 2;3 6.9906E-31 26461 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 225.97 214.43 1240500000 185260000 157340000 153220000 806470 0 719660 97240000 98113000 88101000 0 0 0 77342000 76737000 62537000 0 0 0 82168000 90188000 70738000 0 0 0 21198 43 20538 393298;393299;393300;393301;393302;393303;393304;393305;393306;393307;393308;393309;393310;393311;393312;393313;393314;393315;393316;393317;393318;393319;393320;393321;393322;393323 240946;240947;240948;240949;240950;240951;240952;240953;240954;240955;240956;240957;240958;240959;240960;240961;240962;240963;240964 240958 19 VEQEYGKPGEK Unmodified 1262.6143 0.61428128 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 10.518 11.333 2;3 3.3205E-07 2707 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.55 141.7 1955900000 208670000 210360000 186350000 0 0 0 144620000 153300000 146430000 0 0 0 144780000 123450000 102010000 0 0 0 203000000 171030000 161910000 0 0 0 21199 58 20539 393324;393325;393326;393327;393328;393329;393330;393331;393332;393333;393334;393335;393336;393337;393338;393339;393340;393341;393342;393343;393344;393345;393346;393347 240965;240966;240967;240968;240969;240970;240971;240972;240973;240974;240975;240976;240977;240978;240979;240980;240981 240968 15 VERGDVISDGPEAPHDILR Unmodified 2074.0443 0.044331016 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 5 5 5 4 4 5 5 4 5 25.781 24.699 2;3;4;5 1.8156E-29 8963 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 259.98 230.29 33266000000 0 0 0 20869000 17600000 17132000 0 0 0 2373800000 2539800000 2277800000 0 0 0 6012200000 5709100000 5731300000 0 0 0 3110500000 2749700000 2705800000 21200 458 20540 393348;393349;393350;393351;393352;393353;393354;393355;393356;393357;393358;393359;393360;393361;393362;393363;393364;393365;393366;393367;393368;393369;393370;393371;393372;393373;393374;393375;393376;393377;393378;393379;393380;393381;393382;393383;393384;393385;393386;393387;393388;393389;393390;393391;393392;393393;393394;393395 240982;240983;240984;240985;240986;240987;240988;240989;240990;240991;240992;240993;240994;240995;240996;240997;240998;240999;241000;241001;241002;241003;241004;241005;241006;241007;241008;241009;241010;241011;241012;241013;241014;241015 241000 32 VERPEVR Unmodified 883.48756 0.48756462 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.799 11.553 2 0.0015858 2828 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.39 93.54 4475100000 86463000 101150000 79303000 2074100 2002600 0 500240000 451050000 460380000 0 0 0 454190000 440480000 431530000 0 0 0 491130000 498400000 464610000 5161000 3377100 3567600 21201 239 20541 393396;393397;393398;393399;393400;393401;393402;393403;393404;393405;393406;393407;393408;393409;393410;393411;393412 241016;241017;241018;241019;241020;241021;241022 241018 7 VESLVPAHCEGGSIDHFFENGDELNEQMVQR Unmodified 3542.5831 0.58308086 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.754 40.101 4 2.5071E-07 19484 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 81.406 80.522 142650000 15902000 12800000 12059000 0 0 0 0 14282000 12470000 0 0 0 11452000 8944700 7859900 0 0 0 19046000 10758000 17074000 0 0 0 21202 35 20542 393413;393414;393415;393416;393417;393418;393419;393420;393421;393422;393423 241023;241024;241025 241024 3 VESQYEK Unmodified 881.41306 0.41306227 1763 P75694 yahO Uncharacterized protein YahO yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 10.471 11.17 2 0.0021192 2557 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 117.93 71.583 1728100000 592810000 589280000 546000000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21203 1763 20543 393424;393425;393426 241026 241026 1 VESSKDFLIATLKPR Unmodified 1702.9618 0.96177059 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 2 2 1 1 1 2 2 2 31.077 29.408 3;4 7.0777E-07 11331 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 116.58 110.8 307570000 0 0 0 3395400 4080600 6328900 3079400 3498500 0 76345000 64496000 73010000 0 0 0 3914800 7229000 8857300 0 0 0 14751000 17302000 21287000 21204 700 20544 393427;393428;393429;393430;393431;393432;393433;393434;393435;393436;393437;393438;393439;393440;393441;393442;393443;393444;393445;393446;393447 241027;241028;241029;241030;241031;241032;241033;241034;241035;241036;241037;241038;241039;241040;241041 241030 15 VETDFAAEVAAMSK Unmodified 1467.6915 0.69154532 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 7 7 7 1 1 1 4 6 4 1 1 1 6 6 4 6 7 5 1 1 45.882 44.328 2;3 9.7308E-11 20278 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 159.99 144.1 9563200000 676580000 638770000 627220000 2096200 2612800 2220900 778290000 764030000 725280000 4961000 4270900 4387800 852800000 773820000 777300000 0 0 0 977420000 989600000 956150000 4618300 775430 0 21205 267 20545 393448;393449;393450;393451;393452;393453;393454;393455;393456;393457;393458;393459;393460;393461;393462;393463;393464;393465;393466;393467;393468;393469;393470;393471;393472;393473;393474;393475;393476;393477;393478;393479;393480;393481;393482;393483;393484;393485;393486;393487;393488;393489;393490;393491;393492;393493;393494;393495;393496;393497;393498;393499;393500;393501;393502;393503;393504;393505;393506;393507;393508;393509;393510;393511;393512;393513;393514;393515;393516;393517;393518;393519;393520;393521;393522;393523;393524 241042;241043;241044;241045;241046;241047;241048;241049;241050;241051;241052;241053;241054;241055;241056;241057;241058;241059;241060;241061;241062;241063;241064;241065;241066;241067;241068;241069;241070;241071;241072;241073;241074;241075;241076;241077;241078;241079;241080;241081;241082;241083;241084;241085;241086;241087;241088;241089;241090;241091;241092;241093;241094;241095;241096;241097;241098;241099;241100;241101;241102;241103;241104;241105;241106;241107;241108;241109;241110;241111;241112;241113;241114;241115;241116;241117;241118;241119;241120;241121;241122;241123;241124;241125;241126;241127;241128;241129;241130;241131;241132;241133;241134;241135;241136;241137;241138;241139;241140;241141;241142;241143;241144;241145;241146;241147 241051 99 VETGSGIGFGATVK Unmodified 1321.6878 0.68778057 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.931 25.782 2 5.3876E-08 11993 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143.17 116.66 996100000 68541000 75152000 0 0 3957400 4800300 98237000 99772000 95279000 13180000 9479900 8316200 82006000 85326000 83805000 2664600 946690 1899500 89052000 90662000 78497000 0 1594500 2929800 21206 244 20546 393525;393526;393527;393528;393529;393530;393531;393532;393533;393534;393535;393536;393537;393538;393539;393540;393541;393542;393543;393544;393545;393546 241148;241149;241150;241151;241152;241153;241154;241155;241156;241157;241158;241159;241160;241161;241162;241163;241164 241151 17 VETHNHPTAISPWPGAATGSGGEIR Unmodified 2541.236 0.23604797 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 1 1 1 2 1 24.924 23.959 3;4 3.1877E-07 10643 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.99 105.33 597340000 160340000 148070000 120930000 0 0 0 14169000 15577000 11128000 0 0 0 28844000 13018000 12361000 0 0 0 18209000 37928000 16759000 0 0 0 21207 1107 20547 393547;393548;393549;393550;393551;393552;393553;393554;393555;393556;393557;393558;393559;393560;393561;393562;393563;393564 241165;241166;241167;241168;241169 241165 5 VETHNHPTAISPWPGAATGSGGEIRDEGATGR Unmodified 3227.5344 0.53441483 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 1 2 2 2 2 2 22.867 22.347 4;5 2.0213E-18 9473 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.26 143.38 417240000 89549000 94088000 90683000 0 0 0 12697000 5390500 17014000 0 0 0 7617200 13849000 13854000 0 0 0 23252000 26349000 22900000 0 0 0 21208 1107 20548 393565;393566;393567;393568;393569;393570;393571;393572;393573;393574;393575;393576;393577;393578;393579;393580;393581;393582;393583;393584;393585;393586 241170;241171;241172;241173;241174;241175 241170 6 VETRPIVASQAIGDK Unmodified 1582.8679 0.8678702 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 2 2 1 18.636 19.07 2;3 1.4394E-14 7317 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 180.48 141.21 484210000 26484000 25254000 20759000 1090600 1054900 993760 54522000 55408000 52989000 5958500 4026700 5113800 34638000 27993000 30572000 0 0 0 12261000 61947000 60811000 0 0 2336700 21209 826 20549 393587;393588;393589;393590;393591;393592;393593;393594;393595;393596;393597;393598;393599;393600;393601;393602;393603;393604;393605;393606;393607;393608;393609;393610;393611;393612;393613;393614;393615;393616;393617;393618;393619 241176;241177;241178;241179;241180;241181;241182;241183;241184;241185;241186;241187;241188;241189;241190;241191;241192;241193;241194;241195 241183 18 VETSMPR Oxidation (M) 834.39055 0.39055269 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 1 0 By MS/MS By MS/MS By matching 1 1 1 10.262 10.834 2 0.097635 2466 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.167 43.754 17012000 0 0 0 0 0 0 0 8645800 5904400 0 2462000 0 0 0 0 0 0 0 0 0 0 0 0 0 21210 1890 20550 393620;393621;393622 241196;241197 241196 2 VETSMPR Unmodified 818.39564 0.39563807 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 12.21 13.074 2 0.0026472 3788 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 111.28 94.352 643090000 0 0 17629000 0 0 0 75899000 73642000 64794000 0 0 0 67794000 67077000 56291000 0 0 0 76829000 78699000 64436000 0 0 0 21211 1890 20550 393623;393624;393625;393626;393627;393628;393629;393630;393631;393632 241198 241198 1 VETTDGVVQLSGTVDSQAQSDR Unmodified 2291.0877 0.087711973 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 6 6 3 5 3 3 3 2 2 3 2 34.305 32.884 2;3 1.6149E-88 14897 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 327.47 322.19 3094100000 777520000 719130000 700320000 0 0 0 136870000 123920000 124960000 0 0 0 67091000 60302000 60091000 0 0 0 95032000 124570000 104320000 0 0 0 21212 943 20551 393633;393634;393635;393636;393637;393638;393639;393640;393641;393642;393643;393644;393645;393646;393647;393648;393649;393650;393651;393652;393653;393654;393655;393656;393657;393658;393659;393660;393661;393662;393663;393664;393665;393666;393667;393668;393669;393670;393671;393672;393673;393674;393675;393676;393677 241199;241200;241201;241202;241203;241204;241205;241206;241207;241208;241209;241210;241211;241212;241213;241214;241215;241216;241217;241218;241219;241220;241221;241222;241223;241224;241225;241226;241227;241228;241229;241230;241231;241232;241233;241234;241235;241236;241237;241238;241239;241240;241241;241242;241243;241244;241245;241246;241247;241248;241249;241250;241251;241252;241253;241254;241255;241256 241200 56 VETVYIPEDDR Unmodified 1334.6354 0.63541065 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.464 26.126 2 5.8549E-05 11973 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 127.76 109.33 215110000 20934000 17154000 16659000 0 0 0 0 15050000 19315000 3640500 1564600 1911000 12199000 14797000 13719000 0 0 0 24425000 26084000 24173000 1212900 1432000 840530 21213 1451 20552 393678;393679;393680;393681;393682;393683;393684;393685;393686;393687;393688;393689;393690;393691;393692;393693;393694;393695 241257;241258;241259;241260;241261;241262;241263;241264 241260 6 VETVYIPEDDRATLCVSSQVGCALECK Unmodified 3098.4359 0.43587126 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 43.43 41.319 3 1.0283E-07 16830 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 105.03 102.86 17627000 0 0 0 977390 0 818660 0 0 0 5142500 0 5488600 0 0 0 0 0 0 0 0 0 2401100 0 2798800 21214 1451 20553 393696;393697;393698;393699;393700;393701 241265 241265 1 VEVAGWVEDPDTYPMAAK Unmodified 1976.919 0.91897907 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 44.618 43.103 2;3 9.743E-14 21246 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.02 181.88 970510000 142800000 125190000 123640000 0 0 0 50729000 53336000 52849000 0 0 0 54189000 53952000 43834000 0 0 0 90504000 91457000 88025000 0 0 0 21215 444 20554 393702;393703;393704;393705;393706;393707;393708;393709;393710;393711;393712;393713;393714;393715;393716;393717;393718;393719;393720;393721;393722;393723;393724;393725 241266;241267;241268;241269;241270;241271;241272;241273;241274;241275;241276;241277;241278;241279;241280;241281 241268 16 VEVETPEENTGDVIGDLSR Unmodified 2057.9753 0.97530798 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 3 2 3 2 2 2 39.78 38.052 2;3 2.9657E-29 18422 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 255.78 233.58 18355000000 1777600000 1476700000 1466500000 12543000 13993000 13236000 1228600000 1192800000 1127600000 13895000 14443000 12995000 1474200000 1298800000 1306600000 6319500 4121700 2978300 2025100000 1971000000 1876900000 13053000 12685000 12612000 21216 264 20555 393726;393727;393728;393729;393730;393731;393732;393733;393734;393735;393736;393737;393738;393739;393740;393741;393742;393743;393744;393745;393746;393747;393748;393749;393750;393751;393752;393753;393754;393755;393756;393757;393758;393759;393760;393761;393762;393763;393764;393765;393766;393767;393768;393769;393770;393771;393772 241282;241283;241284;241285;241286;241287;241288;241289;241290;241291;241292;241293;241294;241295;241296;241297;241298;241299;241300;241301;241302;241303;241304;241305;241306;241307;241308;241309;241310;241311;241312;241313;241314;241315;241316;241317;241318;241319;241320;241321;241322;241323;241324;241325;241326;241327;241328;241329 241299 48 VEVLSAGADDYVTK Unmodified 1465.73 0.73003931 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By MS/MS 1 17.287 18.091 3 0.16363 6574 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 11.44 0 15370000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15370000 0 0 0 0 21217 1214 20556 393773 241330 241330 1 VEVLSAGADDYVTKPFHIEEVMAR Unmodified 2675.3265 0.32650246 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.149 41.634 3;4 3.1393E-15 20288 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.98 134.95 914290000 123000000 104610000 94547000 0 0 0 72319000 77023000 67397000 0 0 0 57973000 64374000 54943000 0 0 0 73201000 63000000 61902000 0 0 0 21218 1214 20557 393774;393775;393776;393777;393778;393779;393780;393781;393782;393783;393784;393785;393786;393787;393788;393789;393790;393791;393792;393793;393794;393795;393796;393797 241331;241332;241333;241334;241335;241336;241337;241338;241339;241340;241341;241342;241343;241344;241345;241346 241339 16 VEVMNTDAEGR Unmodified 1219.5503 0.55030081 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.916 16.659 2 3.116E-10 5933 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 218.55 205.49 240560000 16206000 18225000 14926000 0 0 0 24809000 25548000 20478000 533760 0 0 24775000 19954000 20456000 0 0 0 20666000 19920000 14063000 0 0 0 21219 1456 20558 393798;393799;393800;393801;393802;393803;393804;393805;393806;393807;393808;393809;393810 241347;241348;241349;241350;241351;241352;241353;241354;241355;241356;241357;241358 241347 11 VEVNLQAEPEHNR Unmodified 1533.7536 0.75356872 307 P0A738 moaC Cyclic pyranopterin monophosphate synthase accessory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.074 16.89 2;3 4.5941E-09 5923 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187.99 171.74 479250000 59074000 62089000 60371000 0 0 0 42478000 43357000 37507000 0 0 0 26322000 27704000 27159000 0 0 0 32702000 30352000 30132000 0 0 0 21220 307 20559 393811;393812;393813;393814;393815;393816;393817;393818;393819;393820;393821;393822;393823;393824;393825;393826;393827;393828;393829;393830;393831;393832;393833;393834 241359;241360;241361;241362;241363;241364;241365;241366;241367 241364 9 VEVPVLGIVENMSVHICSNCGHHEPIFGTGGAEK Unmodified 3672.7487 0.7487064 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 49.939 48.513 4;5 4.3929E-14 23984 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 128.89 127.29 1119000000 91615000 86096000 58720000 4654300 5639200 5088800 113390000 90119000 104180000 11735000 9831400 5900600 81742000 65780000 69356000 0 0 0 114100000 85928000 106100000 0 5143500 3843600 21221 902 20560 393835;393836;393837;393838;393839;393840;393841;393842;393843;393844;393845;393846;393847;393848;393849;393850;393851;393852;393853;393854;393855;393856;393857;393858;393859;393860;393861;393862;393863;393864;393865;393866;393867;393868;393869 241368;241369;241370;241371;241372;241373;241374;241375;241376;241377;241378;241379;241380;241381;241382;241383;241384;241385;241386;241387 241371 20 VEVQGDLNNALTQPQNQQQLNNVAVNSTLPTEPATVAPVR Unmodified 4267.1833 0.1832907 1072 P11557 damX Cell division protein DamX yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 47.26 45.708 4 0.087433 18069 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 27.136 23.177 63191000 6866100 0 0 2240700 2753200 2515500 0 0 0 6742600 0 7194600 9633200 0 0 0 0 0 0 5329900 11223000 3998700 0 4694200 21222 1072 20561 393870;393871;393872;393873;393874;393875;393876;393877;393878;393879;393880 241388;241389;241390;241391;241392;241393;241394 241391 7 VEWLMGYLTSHR Oxidation (M) 1506.7289 0.72893388 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 6 9 7 1 1 1 10 8 8 3 6 6 37.728 36.378 2;3 1.1505E-05 14207 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 119.74 114.85 457530000 8829400 0 4202800 1444800 2051800 0 0 0 0 75728000 53488000 41382000 3148500 2941100 3690000 72345000 49684000 60507000 0 0 0 23582000 27064000 27441000 21223 1616 20562 393881;393882;393883;393884;393885;393886;393887;393888;393889;393890;393891;393892;393893;393894;393895;393896;393897;393898;393899;393900;393901;393902;393903;393904;393905;393906;393907;393908;393909;393910;393911;393912;393913;393914;393915;393916;393917;393918;393919;393920;393921;393922;393923;393924;393925;393926;393927;393928;393929;393930;393931;393932;393933;393934;393935;393936;393937;393938;393939;393940;393941;393942;393943;393944;393945;393946;393947;393948;393949;393950 241395;241396;241397;241398;241399;241400;241401;241402;241403;241404;241405;241406;241407;241408;241409;241410;241411;241412;241413;241414;241415;241416;241417;241418;241419;241420;241421;241422;241423;241424;241425 241409 572 30 VEWLMGYLTSHR Unmodified 1490.734 0.73401926 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 3 4 4 2 2 2 3 3 6 2 2 2 4 4 4 44.961 43.433 2;3 2.1899E-17 15785 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 221.52 182.5 21824000000 49452000 47218000 41817000 1688900 1593400 1650200 56058000 57474000 47936000 2398400000 1997300000 1976900000 67799000 56500000 50604000 3964700000 2865700000 3177400000 81902000 73710000 78436000 1758400000 1457400000 1514400000 21224 1616 20562 393951;393952;393953;393954;393955;393956;393957;393958;393959;393960;393961;393962;393963;393964;393965;393966;393967;393968;393969;393970;393971;393972;393973;393974;393975;393976;393977;393978;393979;393980;393981;393982;393983;393984;393985;393986;393987;393988;393989;393990;393991;393992;393993;393994;393995;393996;393997;393998;393999;394000;394001;394002;394003;394004;394005;394006;394007;394008;394009;394010;394011;394012 241426;241427;241428;241429;241430;241431;241432;241433;241434;241435;241436;241437;241438;241439;241440;241441;241442;241443;241444;241445;241446;241447;241448;241449;241450;241451;241452;241453;241454;241455;241456;241457;241458;241459;241460;241461;241462;241463;241464;241465;241466;241467;241468;241469;241470;241471;241472;241473;241474;241475;241476;241477;241478;241479;241480;241481;241482;241483;241484;241485 241430 59 VEYDGLSNSQPLR Unmodified 1476.7209 0.72087161 1836 P76220 ydjY Uncharacterized protein YdjY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.05 25.885 2 5.3303E-25 11174 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 247.54 186.95 277290000 0 0 0 0 0 0 33518000 36782000 44103000 8693800 9806500 5710500 25771000 18963000 20565000 1845700 931420 957350 18987000 20504000 24432000 2769000 0 2948800 21225 1836 20563 394013;394014;394015;394016;394017;394018;394019;394020;394021;394022;394023;394024;394025;394026;394027;394028;394029 241486;241487;241488;241489;241490;241491;241492;241493;241494;241495;241496;241497 241497 12 VEYMLQSQINPQLAGHGGR Unmodified 2097.0426 0.042556877 1654 P63020 nfuA Fe/S biogenesis protein NfuA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 1 3 3 2 2 1 2 1 3 2 1 1 1 2 3 2 1 1 1 31.414 29.977 2;3;4 9.614E-81 14125 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 317.99 312.84 4237300000 574840000 417190000 385650000 6407900 5787600 7101400 416620000 402170000 435570000 24984000 17587000 14294000 19990000 32645000 28360000 5541900 5341300 6180900 472950000 462390000 463390000 10906000 10232000 11184000 21226 1654 20564 394030;394031;394032;394033;394034;394035;394036;394037;394038;394039;394040;394041;394042;394043;394044;394045;394046;394047;394048;394049;394050;394051;394052;394053;394054;394055;394056;394057;394058;394059;394060;394061;394062;394063;394064;394065;394066;394067;394068;394069;394070;394071;394072;394073 241498;241499;241500;241501;241502;241503;241504;241505;241506;241507;241508;241509;241510;241511;241512;241513;241514;241515;241516;241517;241518;241519;241520;241521;241522;241523;241524;241525;241526 241510 29 VFATYAK Unmodified 798.42759 0.42759012 77 P02943 lamB Maltoporin yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.528 16.057 2 0.016885 5367 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 80.294 74.756 171180000 0 0 2475900 1771400 1464800 1609700 2924300 3428700 0 11381000 10761000 10056000 1118000 4846800 5425700 4829700 3264200 3904100 19256000 21637000 19963000 12170000 13371000 15516000 21227 77 20565 394074;394075;394076;394077;394078;394079;394080;394081;394082;394083;394084;394085;394086;394087;394088;394089;394090;394091;394092;394093;394094 241527;241528;241529 241529 3 VFAWYQADGR Unmodified 1211.5724 0.57235688 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 34.693 33.398 2 4.7794E-06 15853 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.1 128.7 150510000 24417000 23427000 22622000 0 0 0 0 0 0 0 0 0 21735000 18885000 19615000 0 0 0 19812000 0 0 0 0 0 21228 1550 20566 394095;394096;394097;394098;394099;394100;394101;394102;394103;394104;394105 241530;241531;241532;241533;241534;241535;241536;241537;241538 241534 8 VFAYATHPIFSGNAANNLR Unmodified 2062.0385 0.038457777 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 33.811 32.313 2;3 3.2598E-29 15643 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 257.52 247.73 6196800000 688610000 623830000 518540000 19388000 23337000 24466000 441890000 377090000 346950000 28807000 21572000 19092000 505540000 489870000 497710000 32113000 29501000 32624000 450500000 531110000 484510000 0 0 9704100 21229 300 20567 394106;394107;394108;394109;394110;394111;394112;394113;394114;394115;394116;394117;394118;394119;394120;394121;394122;394123;394124;394125;394126;394127;394128;394129;394130;394131;394132;394133;394134;394135;394136;394137;394138;394139;394140;394141;394142;394143;394144 241539;241540;241541;241542;241543;241544;241545;241546;241547;241548;241549;241550;241551;241552;241553;241554;241555;241556;241557;241558;241559;241560;241561;241562;241563;241564;241565;241566;241567;241568;241569;241570;241571 241550 32 VFDAVLPLLNTSAR Unmodified 1514.8457 0.8456782 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 2 2 2 52.983 51.543 2;3 1.0057E-08 25312 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.7 142.25 630750000 97959000 109830000 96812000 0 0 0 66333000 63791000 63913000 0 0 0 18381000 19364000 17436000 0 0 0 25578000 27313000 24048000 0 0 0 21230 1817 20568 394145;394146;394147;394148;394149;394150;394151;394152;394153;394154;394155;394156;394157;394158;394159;394160;394161;394162;394163;394164;394165;394166;394167 241572;241573;241574;241575;241576;241577 241575 6 VFDMGVDVR Unmodified 1036.5012 0.50116577 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.446 32.007 2 0.00028978 14502 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 118.74 109.92 245980000 24729000 24071000 20642000 0 0 0 23886000 21488000 15951000 0 0 0 20798000 16255000 16922000 0 0 0 20243000 20226000 20773000 0 0 0 21231 1565 20569 394168;394169;394170;394171;394172;394173;394174;394175;394176;394177;394178;394179 241578;241579;241580;241581;241582;241583;241584;241585;241586;241587;241588 241588 9 VFDVDSQR Unmodified 964.46141 0.46140945 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 17.941 18.414 2 0.01304 5143 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 74.127 67.673 103590000 15783000 13853000 9249100 0 0 0 13475000 11081000 11647000 0 0 0 0 0 0 0 2225100 2507500 13635000 0 10139000 0 0 0 21232 1355 20570 394180;394181;394182;394183;394184;394185;394186;394187;394188;394189 241589;241590;241591 241589 1 VFDVNEPLSQINQAK Unmodified 1700.8733 0.87334951 755 P0ACX3 ydhR Putative monooxygenase YdhR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 1 38.808 37.215 2;3 1.4974E-20 18502 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 220.1 203.72 491610000 86541000 89740000 76134000 0 0 0 29716000 26750000 29092000 0 0 0 38363000 30355000 26634000 0 0 1252800 20237000 18809000 17990000 0 0 0 21233 755 20571 394190;394191;394192;394193;394194;394195;394196;394197;394198;394199;394200;394201;394202;394203;394204;394205;394206;394207;394208;394209;394210;394211 241592;241593;241594;241595;241596;241597;241598;241599;241600;241601;241602;241603;241604;241605 241592 14 VFEAETLQR Unmodified 1091.5611 0.56112349 1187 P21866 kdpE KDP operon transcriptional regulatory protein KdpE yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 22.012 22.21 2 0.001001 9147 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.741 73.001 30962000 10573000 10016000 10373000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21234 1187 20572 394212;394213;394214 241606 241606 1 VFEGNRPTNSILLR Unmodified 1614.8842 0.88418897 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 3 2 2 1 1 1 2 3 3 1 2 2 2 26.068 24.908 2;3 3.112E-26 11569 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 252.21 233.47 10812000000 973100000 906750000 845570000 1629200 1527100 1522800 1308900000 1326000000 1490800000 1732600 2100400 2309100 588020000 606180000 594820000 0 1787800 0 688270000 743890000 727180000 0 0 0 21235 277 20573 394215;394216;394217;394218;394219;394220;394221;394222;394223;394224;394225;394226;394227;394228;394229;394230;394231;394232;394233;394234;394235;394236;394237;394238;394239;394240;394241;394242;394243;394244;394245;394246;394247;394248 241607;241608;241609;241610;241611;241612;241613;241614;241615;241616;241617;241618;241619;241620;241621;241622;241623;241624;241625;241626;241627;241628;241629;241630;241631 241608 25 VFEQENLLQK Unmodified 1246.6558 0.65575216 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 28.285 26.955 2 1.0213E-08 12326 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 182.39 170.9 1455800000 328010000 360650000 296790000 631080 942580 0 105340000 106060000 103420000 0 0 0 0 0 0 0 0 0 50900000 55346000 47703000 0 0 0 21236 1194 20574 394249;394250;394251;394252;394253;394254;394255;394256;394257;394258;394259 241632;241633;241634;241635;241636;241637 241637 6 VFESLAR Unmodified 820.4443 0.44430282 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 1 1 2 1 20.643 20.955 2 0.0017393 7827 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 126.16 89.6 745310000 42039000 38626000 31477000 0 0 0 263190000 250030000 41414000 0 0 0 12345000 10910000 9869200 0 1077900 0 12733000 18446000 13157000 0 0 0 21237 1557 20575 394260;394261;394262;394263;394264;394265;394266;394267;394268;394269;394270;394271;394272;394273;394274;394275;394276 241638;241639;241640;241641;241642;241643;241644;241645 241645 4 VFFCNSGAEANEAALK Unmodified 1726.7985 0.79847001 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 31.313 30.018 2;3 2.4773E-19 14095 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 201.46 199.21 1182700000 449170000 368510000 339100000 1631900 0 1499200 0 0 2948800 0 0 0 0 0 0 0 0 0 7351200 6323600 6149200 0 0 0 21238 1919 20576 394277;394278;394279;394280;394281;394282;394283;394284;394285;394286;394287;394288 241646;241647;241648;241649;241650;241651 241646 4 VFFGAWVEIENDDGVTHR Unmodified 2089.9858 0.9857535 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 4 4 2 3 2 1 49.095 48.276 3 1.3021E-09 19370 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 91.457 90.971 121590000 0 0 0 0 0 0 0 1428100 0 19425000 9352900 13899000 0 0 0 26102000 19018000 13347000 0 0 0 8371400 5699100 4951800 21239 1338 20577 394289;394290;394291;394292;394293;394294;394295;394296;394297;394298;394299;394300;394301;394302;394303;394304;394305;394306;394307;394308;394309;394310 241652;241653;241654;241655;241656;241657;241658;241659;241660;241661;241662;241663;241664;241665;241666;241667;241668;241669 241660 16 VFGILQALGEER Unmodified 1330.7245 0.72450043 1845 P76268 kdgR Transcriptional regulator KdgR yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.466 49.077 2 2.2152E-08 23956 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.74 164.44 730090000 56353000 47367000 45832000 0 0 0 78462000 69813000 75619000 0 0 0 50795000 41399000 55927000 0 0 0 70833000 76343000 61347000 0 0 0 21240 1845 20578 394311;394312;394313;394314;394315;394316;394317;394318;394319;394320;394321;394322 241670;241671;241672;241673;241674 241671 2 VFGLVAPGYK Unmodified 1049.591 0.59096706 180 P08201 nirB Nitrite reductase (NADH) large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.486 34.862 2 0.00029876 16763 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 112.17 108.19 316590000 10604000 9877200 8291900 0 0 0 22369000 22917000 23075000 0 0 0 29946000 25765000 27114000 0 0 0 39581000 49978000 45720000 663780 0 691130 21241 180 20579 394323;394324;394325;394326;394327;394328;394329;394330;394331;394332;394333;394334;394335;394336 241675;241676;241677;241678;241679;241680;241681;241682;241683;241684;241685;241686 241679 12 VFGNLMVDVVATNEK Unmodified 1634.8338 0.83379288 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 46.339 44.714 2 0.034913 21053 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 51.726 25.787 23246000 0 0 0 0 1250500 0 4266400 3422700 3853400 0 0 0 3443500 3436700 0 0 0 0 3572400 0 0 0 0 0 21242 1867 20580 394337;394338;394339;394340;394341;394342;394343 241687 241687 0 VFGNSHGMLQGYCSTR Unmodified 1812.8036 0.80357216 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 1 1 2 1 2 2 1 22.726 22.203 2;3 1.0673E-13 9800 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.71 130.17 375730000 32437000 35616000 31197000 0 958400 1476600 38656000 30486000 40236000 0 0 0 23257000 21510000 22008000 0 523320 0 29312000 37472000 30587000 0 0 0 21243 948 20581 394344;394345;394346;394347;394348;394349;394350;394351;394352;394353;394354;394355;394356;394357;394358;394359;394360;394361;394362;394363;394364;394365;394366;394367 241688;241689;241690;241691;241692;241693;241694;241695;241696;241697;241698;241699;241700;241701 241688 14 VFGQVDDAK Unmodified 977.48181 0.48181054 1498 P37765 rluB Ribosomal large subunit pseudouridine synthase B yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 15.917 16.832 2 0.0036914 5819 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 80.684 60.163 21129000 0 0 0 0 0 0 0 0 0 0 0 0 0 2782000 0 0 0 0 5585400 5405500 7356300 0 0 0 21244 1498 20582 394368;394369;394370;394371;394372 241702;241703;241704 241704 3 VFHAGTK Unmodified 758.40752 0.40752338 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 9.5452 10.031 2 0.006056 2422 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.068 97.068 178990000 74718000 86481000 0 0 0 0 0 0 0 0 0 0 0 0 2854400 3297500 1295200 1496100 4761800 4084300 0 0 0 0 21245 1112 20583 394373;394374;394375;394376;394377;394378;394379;394380 241705;241706;241707;241708 241706 4 VFHQGTR Unmodified 843.43514 0.43513512 1346 P30750 metN Methionine import ATP-binding protein MetN yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 7.53 8.3993 2 0.076499 1864 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 58.194 49.181 5570600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1465300 1899000 2206300 0 0 0 21246 1346 20584 394381;394382;394383 241709 241709 1 VFHQLGR Unmodified 855.47152 0.47152062 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.251 12.865 2 0.0070833 3631 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 92.785 87.025 433520000 33682000 23685000 33452000 4733800 5326700 5675500 23915000 28415000 25731000 7650600 6348900 7356000 24536000 28957000 26479000 5935000 1698800 1670800 43884000 38497000 38240000 5992200 5775300 5880600 21247 862 20585 394384;394385;394386;394387;394388;394389;394390;394391;394392;394393;394394;394395;394396;394397;394398;394399;394400;394401;394402;394403;394404;394405;394406;394407 241710 241710 1 VFHTQVR Unmodified 885.48209 0.48208531 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.318 11.909 2 0.035599 2578 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 65.672 35.831 324390000 14737000 0 0 2995700 0 2960500 65279000 53059000 64222000 15199000 11905000 9515200 30018000 27736000 0 2409100 0 0 0 19019000 0 2783900 2552100 0 21248 656 20586 394408;394409;394410;394411;394412;394413;394414;394415;394416;394417;394418;394419;394420;394421;394422 241711 241711 1 VFIAEDLGCHMDDVNVK Unmodified 1960.9023 0.90228315 1648 P62617 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.765 35.108 3 1.0995E-09 16964 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.47 130.61 266930000 18744000 20290000 14881000 0 0 0 22855000 23351000 28680000 0 0 0 18300000 20009000 21546000 0 0 0 30747000 23707000 23818000 0 0 0 21249 1648 20587 394423;394424;394425;394426;394427;394428;394429;394430;394431;394432;394433;394434 241712;241713;241714;241715;241716;241717;241718;241719;241720;241721;241722 241716 11 VFIALHGR Unmodified 911.53412 0.53412088 171 P07862 ddlB D-alanine--D-alanine ligase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 1 1 1 1 1 2 2 2 18.341 18.951 2 0.00031488 6862 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 146.21 137.44 139680000 11508000 11333000 11726000 249890 236610 0 7617800 8487200 9384500 0 0 0 13160000 11718000 10794000 0 0 0 13061000 17379000 13024000 0 0 0 21250 171 20588 394435;394436;394437;394438;394439;394440;394441;394442;394443;394444;394445;394446;394447;394448;394449;394450;394451;394452;394453 241723;241724;241725;241726;241727;241728;241729;241730;241731;241732 241730 7 VFIDNYAAIPSESIR Unmodified 1693.8675 0.86753585 1881 P77148 ydhS Uncharacterized protein YdhS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.937 41.376 2 7.2494E-09 20019 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.68 143.56 170290000 34236000 32445000 31498000 0 0 0 15095000 14161000 11823000 0 0 0 4141800 3790700 3126200 0 0 0 5885500 7656600 6431500 0 0 0 21251 1881 20589 394454;394455;394456;394457;394458;394459;394460;394461;394462;394463;394464;394465 241733;241734;241735;241736;241737;241738 241738 6 VFIEHNDNFR Unmodified 1289.6153 0.61528433 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 18.221 18.656 2;3 7.555E-09 7005 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 187.78 180.21 1145300000 205120000 222920000 163380000 3392100 3832000 3761900 175310000 43315000 164120000 4871200 3757800 2848600 36101000 36179000 32830000 0 0 0 43587000 0 0 0 0 0 21252 1503 20590 394466;394467;394468;394469;394470;394471;394472;394473;394474;394475;394476;394477;394478;394479;394480;394481;394482;394483;394484;394485;394486;394487;394488;394489;394490;394491 241739;241740;241741;241742;241743;241744;241745;241746;241747;241748 241741 10 VFIGSCTNSR Unmodified 1139.5393 0.53934219 225 P0A6A6 leuC 3-isopropylmalate dehydratase large subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 16.391 17.221 2 9.7114E-05 6141 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 130.75 119.15 127320000 37624000 38968000 29188000 0 0 0 0 0 0 0 0 0 3699800 3639300 2855300 0 0 0 3666600 4972200 2706200 0 0 0 21253 225 20591 394492;394493;394494;394495;394496;394497;394498;394499;394500 241749;241750;241751;241752;241753 241749 5 VFIKPGNGK Unmodified 958.56 0.56000128 378 P0A7X3 rpsI 30S ribosomal protein S9 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.116 12.689 2 0.0041488 3515 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.265 72.217 162240000 24520000 21048000 0 4434900 2881600 3788700 0 0 0 11235000 9578900 9456900 9945500 8549200 9247600 5973500 1305900 1837400 11186000 10045000 0 5283900 5636200 6286100 21254 378 20592 394501;394502;394503;394504;394505;394506;394507;394508;394509;394510;394511;394512;394513;394514;394515;394516;394517;394518;394519 241754;241755 241755 2 VFIMDDAEQFMPNYLR Unmodified 1987.9172 0.91720493 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.577 53.129 2 5.1085E-39 25273 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 320.96 312.85 896480000 85685000 101500000 78544000 0 0 0 48138000 49621000 51520000 0 0 0 82222000 81364000 73046000 0 0 0 85667000 81628000 77547000 0 0 0 21255 295 20593 394520;394521;394522;394523;394524;394525;394526;394527;394528;394529;394530;394531 241756;241757;241758;241759;241760;241761;241762;241763 241761 8 VFINDLLAR Unmodified 1059.6077 0.60767976 675 P0ABS5 dnaG DNA primase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.191 41.66 2 0.00010116 19570 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 135.84 108.88 99787000 8717500 9307300 8409900 281650 359700 0 8628100 8202200 7135100 0 0 0 6656400 7187300 7017000 0 0 0 8839300 9106100 9939500 0 0 0 21256 675 20594 394532;394533;394534;394535;394536;394537;394538;394539;394540;394541;394542;394543;394544;394545 241764;241765;241766;241767;241768;241769;241770 241769 7 VFITDHNHGSFK Unmodified 1400.6837 0.68369824 1493 P37750 wbbJ Putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.544 15.173 3 0.00012839 4296 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 86.114 76.063 116910000 0 2585100 0 0 1029900 1163100 11717000 12684000 9424600 5557800 4626900 4552900 7287000 7340300 6446100 0 0 0 10383000 10319000 10411000 4888300 3324200 3172100 21257 1493 20595 394546;394547;394548;394549;394550;394551;394552;394553;394554;394555;394556;394557;394558;394559;394560;394561;394562;394563 241771;241772;241773;241774;241775 241771 4 VFLFGAK Unmodified 780.45341 0.45341094 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.442 32.96 2 0.037838 11524 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 65.263 65.263 1783300000 45494000 36285000 37331000 1156400 1301900 2333600 196870000 192320000 169280000 71875000 66792000 69376000 105130000 104110000 89818000 33329000 23798000 29887000 134610000 144090000 165550000 24439000 19841000 18307000 21258 30 20596 394564;394565;394566;394567;394568;394569;394570;394571;394572;394573;394574;394575;394576;394577;394578;394579;394580;394581;394582;394583;394584;394585;394586;394587 241776;241777;241778;241779;241780;241781;241782;241783;241784;241785;241786;241787;241788;241789;241790;241791;241792;241793;241794;241795;241796 241776 21 VFLGTDSAPHAR Unmodified 1269.6466 0.64658446 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 17.094 17.825 2;3 5.0798E-07 6598 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.56 142.96 2965700000 501670000 516580000 423560000 1739000 1921600 408510 160100000 142670000 162080000 0 0 0 164120000 110440000 90920000 0 0 0 224160000 246790000 218530000 0 0 0 21259 104 20597 394588;394589;394590;394591;394592;394593;394594;394595;394596;394597;394598;394599;394600;394601;394602;394603;394604;394605;394606;394607;394608;394609;394610;394611;394612;394613;394614;394615 241797;241798;241799;241800;241801;241802;241803;241804;241805;241806;241807;241808;241809;241810;241811;241812;241813;241814 241800 18 VFLNIGDK Unmodified 904.50182 0.5018177 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.328 28.804 2 0.0010066 12889 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.89 68.916 5927700000 354690000 295680000 276930000 4353300 3451600 4080900 737550000 695480000 698340000 10982000 11533000 8911600 508720000 522670000 457240000 5635200 0 0 461860000 447020000 401570000 7732700 6808800 6494300 21260 1184 20598 394616;394617;394618;394619;394620;394621;394622;394623;394624;394625;394626;394627;394628;394629;394630;394631;394632;394633;394634;394635;394636;394637 241815;241816;241817;241818;241819;241820;241821;241822;241823;241824;241825;241826;241827;241828;241829;241830;241831;241832;241833;241834 241832 20 VFMADFEDSLAPDWNK Unmodified 1883.84 0.84000047 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 53.039 51.624 2;3 8.4172E-16 25323 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 232.17 230.29 7801700000 2073800000 1930000000 1652200000 3843200 3324100 4152300 395750000 366550000 346150000 0 1860000 2129400 171010000 148060000 142030000 0 0 0 181760000 183650000 195530000 0 0 0 21261 195 20599 394638;394639;394640;394641;394642;394643;394644;394645;394646;394647;394648;394649;394650;394651;394652;394653;394654;394655;394656;394657;394658;394659;394660;394661;394662;394663;394664;394665;394666 241835;241836;241837;241838;241839;241840;241841;241842;241843;241844;241845;241846;241847;241848;241849;241850;241851;241852;241853;241854;241855;241856;241857;241858;241859;241860 241849 26 VFMADFEDSLAPDWNK Oxidation (M) 1899.8349 0.83491509 195 P08997 aceB Malate synthase A yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 2 2 1 1 49.015 47.584 2 8.6082E-10 23914 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.16 136.09 88297000 29095000 18873000 13489000 0 0 0 9101100 10744000 5962800 0 0 0 1032400 0 0 0 0 0 0 0 0 0 0 0 21262 195 20599 394667;394668;394669;394670;394671;394672;394673;394674;394675;394676;394677 241861;241862;241863;241864;241865 241863 67 5 VFMATANGTVK Unmodified 1137.5852 0.58522975 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.32 20.509 2 0.0001186 6781 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 116.3 111.76 181940000 12327000 11484000 7136300 2678800 1580200 1979500 10811000 6824300 9717500 8292000 6967600 5828400 15680000 10023000 12813000 0 1656300 997430 12221000 17644000 13651000 4669500 3592200 3370700 21263 882 20600 394678;394679;394680;394681;394682;394683;394684;394685;394686;394687;394688;394689;394690;394691;394692;394693;394694;394695;394696;394697;394698;394699;394700 241866;241867;241868;241869;241870;241871;241872;241873;241874;241875 241866 7 VFMIEEAQR Unmodified 1121.5539 0.55392962 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 28.901 27.701 2 0.021432 12867 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 62.546 22.545 34361000 0 0 0 0 0 0 0 5124700 0 0 0 0 4775200 5111600 5196300 0 0 0 0 7983400 6170100 0 0 0 21264 1856 20601 394701;394702;394703;394704;394705;394706 241876;241877;241878;241879 241876 1 VFMIEEAQRPGEYMTAFEDEHGTYIMNSK Unmodified 3422.5257 0.5257489 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.523 44.116 4 0.15281 21450 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 20.038 19.967 410840000 39404000 41062000 25643000 0 0 0 28765000 32013000 0 0 0 0 34927000 35606000 34717000 0 0 0 45610000 42959000 50133000 0 0 0 21265 1856 20602 394707;394708;394709;394710;394711;394712;394713;394714;394715;394716;394717 241880 241880 1 VFMQPASEGTGIIAGGAMR Unmodified 1891.9284 0.92843832 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 39.724 38.137 2;3 6.2077E-38 18809 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 247.67 246.55 8099800000 1351800000 1146300000 1138000000 34815000 39052000 38330000 219850000 187400000 279250000 98078000 112790000 94041000 522480000 455720000 432880000 92962000 62482000 63341000 473540000 430290000 650780000 59780000 59602000 56292000 21266 376 20603 394718;394719;394720;394721;394722;394723;394724;394725;394726;394727;394728;394729;394730;394731;394732;394733;394734;394735;394736;394737;394738;394739;394740;394741;394742;394743;394744;394745;394746;394747;394748;394749;394750;394751;394752;394753;394754;394755;394756;394757;394758;394759;394760;394761 241881;241882;241883;241884;241885;241886;241887;241888;241889;241890;241891;241892;241893;241894;241895;241896;241897;241898;241899;241900;241901;241902;241903;241904;241905;241906;241907;241908;241909;241910;241911;241912;241913;241914;241915;241916;241917;241918;241919;241920;241921;241922;241923;241924 241895 44 VFNFDHVEVAANPVHLFYVLEQQIER Unmodified 3112.5771 0.57705491 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 55.076 53.572 4 1.0186E-22 26680 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 174.31 172.2 894150000 187480000 190590000 185690000 0 0 0 109560000 103590000 97380000 0 0 0 0 0 0 0 0 0 0 0 19868000 0 0 0 21267 757 20604 394762;394763;394764;394765;394766;394767;394768 241925;241926;241927;241928 241926 4 VFNFIENPYRPVTFDYLMVSPQNSR Unmodified 3032.4855 0.48546271 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 53.895 52.416 3 3.0344E-15 25949 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 129.23 123.13 46168000 16371000 0 12425000 0 0 0 0 5870800 4299600 0 0 0 0 0 0 0 0 0 3409300 0 3792200 0 0 0 21268 326 20605 394769;394770;394771;394772;394773;394774 241929 241929 1 VFNGGAVK Unmodified 790.43374 0.43373813 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 1 1 1 1 2 2 2 1 1 2 2 2 2 2 2 16.646 17.099 2 0.0031954 2858 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 94.163 73.608 579640000 81647000 13022000 5431100 6155400 6215300 0 45646000 35745000 43459000 0 14121000 14182000 14225000 93646000 13562000 0 0 0 18094000 21262000 153220000 0 0 0 21269 1321 20606 394775;394776;394777;394778;394779;394780;394781;394782;394783;394784;394785;394786;394787;394788;394789;394790;394791;394792;394793;394794;394795;394796;394797;394798;394799;394800;394801;394802 241930;241931;241932;241933;241934 241932 4 VFNITLR Unmodified 861.50724 0.50723743 745 P0ACS7 rpiR HTH-type transcriptional regulator RpiR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.678 32.231 2 0.0046288 15608 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 103.02 60.244 65248000 8660200 6430400 7602700 0 0 0 7640900 5531300 6246200 0 0 0 4133700 4854200 4243900 0 0 0 5665200 4239600 0 0 0 0 21270 745 20607 394803;394804;394805;394806;394807;394808;394809;394810;394811;394812;394813;394814 241935;241936;241937;241938;241939;241940;241941;241942 241937 7 VFNMNKPGALR Unmodified 1245.6652 0.66521141 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 2 2 19.057 19.618 2;3 5.4072E-07 7399 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 157.86 137.53 2621800000 224960000 226280000 182340000 0 0 0 251800000 261370000 225210000 0 0 0 146630000 128700000 144990000 0 0 0 268610000 296880000 264070000 0 0 0 21271 338 20608 394815;394816;394817;394818;394819;394820;394821;394822;394823;394824;394825;394826;394827;394828;394829;394830;394831;394832;394833;394834;394835;394836;394837;394838;394839 241943;241944;241945;241946;241947;241948;241949;241950;241951;241952;241953;241954;241955;241956;241957;241958;241959;241960 241950 16 VFNMNKPGALR Oxidation (M) 1261.6601 0.66012603 338 P0A7E9 pyrH Uridylate kinase yes yes 0 1 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 31.288 29.604 2 0.038353 11041 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 51.995 39.468 22508000 0 0 0 3854300 3503700 4471400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3798200 3378200 3501900 21272 338 20608 394840;394841;394842;394843;394844;394845 241961;241962;241963 241962 151 3 VFNVAGAK Unmodified 804.44939 0.4493882 160 P07363 cheA Chemotaxis protein CheA yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 16.076 17.063 2 0.017381 4462 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 66.993 49.432 12800000 0 0 0 4827100 3485100 4488100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21273 160 20609 394846;394847;394848 241964 241964 1 VFPAIDYNR Unmodified 1093.5556 0.55564418 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.624 30.025 2 0.00028485 14155 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.17 115.71 495440000 67611000 70744000 54091000 4742800 5748500 4882500 33209000 35582000 33241000 38127000 31850000 25246000 18743000 0 15813000 0 0 0 27613000 28195000 0 0 0 0 21274 982 20610 394849;394850;394851;394852;394853;394854;394855;394856;394857;394858;394859;394860;394861;394862;394863;394864;394865;394866 241965;241966;241967;241968;241969;241970;241971;241972;241973;241974;241975;241976;241977;241978;241979;241980;241981;241982 241977 18 VFPDKPITEK Unmodified 1172.6441 0.64412484 821 P0ADY7 rplP 50S ribosomal protein L16 yes yes 0 0 1 By MS/MS By MS/MS By matching By matching 1 1 1 1 16.006 16.783 3 0.062635 5873 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 38.783 24.548 33622000 11497000 11415000 0 0 0 0 0 0 4236400 0 0 0 0 6473100 0 0 0 0 0 0 0 0 0 0 21275 821 20611 394867;394868;394869;394870 241983;241984 241983 2 VFPDKPITEKPLAVR Unmodified 1708.9876 0.98759141 821 P0ADY7 rplP 50S ribosomal protein L16 yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 1 2 2 23.435 22.577 3;4 6.3503E-06 9295 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 91.441 89.474 489800000 27984000 28904000 26740000 0 0 1117000 25890000 24498000 20909000 6949800 6568800 4686100 51120000 47279000 48568000 0 0 0 42726000 51642000 58333000 3253300 6148800 6481700 21276 821 20612 394871;394872;394873;394874;394875;394876;394877;394878;394879;394880;394881;394882;394883;394884;394885;394886;394887;394888;394889;394890;394891;394892;394893;394894;394895;394896;394897;394898;394899;394900;394901;394902;394903;394904;394905 241985;241986;241987;241988;241989;241990;241991;241992;241993;241994 241991 8 VFPTLAESLHDVDFTVATTAR Unmodified 2289.1641 0.1641118 1454 P37005 lasT Uncharacterized tRNA/rRNA methyltransferase LasT yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.669 49.334 3 2.2867E-06 23868 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 87.772 80.074 152260000 13461000 11905000 13845000 0 0 0 0 15250000 12310000 0 0 0 12317000 13788000 9764800 0 0 0 16015000 15480000 17141000 985350 0 0 21277 1454 20613 394906;394907;394908;394909;394910;394911;394912;394913;394914;394915;394916;394917 241995;241996;241997;241998;241999;242000;242001 241997 0 VFQEEIFGPVLAVTTFK Unmodified 1924.0346 0.034601177 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 1 2 55.08 53.592 2;3 7.366E-09 26351 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.16 147.8 1164500000 333420000 317350000 336910000 0 0 0 55479000 46724000 43455000 0 0 0 3957800 2461500 2590000 0 0 0 9034700 3423600 9688400 0 0 0 21278 1486 20614 394918;394919;394920;394921;394922;394923;394924;394925;394926;394927;394928;394929;394930;394931;394932;394933;394934;394935;394936;394937 242002;242003;242004;242005;242006;242007;242008;242009;242010 242009 9 VFQGEGFDEYLR Unmodified 1458.6779 0.67794416 1041 P0C0R7 rlmE Ribosomal RNA large subunit methyltransferase E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 40.156 38.392 2 0.00011672 18517 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.827 83.825 107610000 18432000 18270000 21953000 525180 756280 0 6087600 0 6467500 0 1815300 1365400 6790000 0 7068100 0 0 0 0 9169500 8908600 0 0 0 21279 1041 20615 394938;394939;394940;394941;394942;394943;394944;394945;394946;394947;394948;394949;394950 242011;242012;242013;242014 242014 1 VFQNTEHVHVVGLR Unmodified 1633.8689 0.86887325 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 2 1 1 2 1 1 1 1 1 1 2 19.298 19.794 2;3 0.00013982 7599 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.633 75.531 155420000 15308000 14142000 8374900 0 0 0 10004000 16150000 6304900 0 0 0 6997700 12427000 9241900 0 0 0 15568000 14416000 26489000 0 0 0 21280 1197 20616 394951;394952;394953;394954;394955;394956;394957;394958;394959;394960;394961;394962;394963;394964;394965 242015;242016;242017;242018;242019 242018 4 VFQTHSPVVDSISVK Unmodified 1641.8726 0.87262123 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 3 2 2 2 2 26.966 25.812 2;3 8.8732E-46 11759 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 320.57 286.19 14002000000 1944500000 1768500000 1542200000 73464000 65252000 59414000 516700000 527790000 513010000 154100000 138150000 124520000 757070000 744560000 801870000 101930000 85380000 94053000 1222000000 1249100000 1169700000 110960000 96829000 141360000 21281 352 20617 394966;394967;394968;394969;394970;394971;394972;394973;394974;394975;394976;394977;394978;394979;394980;394981;394982;394983;394984;394985;394986;394987;394988;394989;394990;394991;394992;394993;394994;394995;394996;394997;394998;394999;395000;395001;395002;395003;395004;395005;395006;395007;395008;395009;395010;395011;395012;395013;395014;395015;395016 242020;242021;242022;242023;242024;242025;242026;242027;242028;242029;242030;242031;242032;242033;242034;242035;242036;242037;242038;242039;242040;242041;242042;242043;242044;242045;242046;242047;242048;242049;242050;242051;242052;242053;242054;242055;242056;242057;242058;242059;242060;242061;242062;242063;242064;242065;242066 242044 47 VFQTHSPVVDSISVKR Unmodified 1797.9737 0.97373226 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 2 2 1 1 1 22.005 21.543 3;4 9.7924E-05 6230 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 58.83 54.728 38333000 0 0 0 0 1224700 0 0 0 0 6003000 2947300 5446300 0 0 0 6289400 6586800 4064600 0 0 0 3051200 0 2719500 21282 352 20618 395017;395018;395019;395020;395021;395022;395023;395024;395025;395026;395027;395028;395029;395030 242067;242068;242069 242068 3 VFSGVPPIK Unmodified 942.55385 0.55385327 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.211 26.838 2 0.074073 12748 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 46.994 36.178 86151000 7297500 0 5109200 1213200 821110 1082600 7854800 6764600 6991700 0 2367800 2611600 5484800 5271800 4592900 0 0 0 7116600 7947000 7556100 2026100 2126600 1915000 21283 1909 20619 395031;395032;395033;395034;395035;395036;395037;395038;395039;395040;395041;395042;395043;395044;395045;395046;395047;395048;395049 242070;242071;242072 242070 1 VFTEHQPDCVMHLAAESHVDR Unmodified 2477.1216 0.12161183 1308 P27830 rffG dTDP-glucose 4,6-dehydratase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 24.724 23.727 4;5 6.6107E-05 10452 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 78.916 78.449 517340000 26580000 31852000 20076000 0 0 0 45091000 38648000 39057000 0 0 0 44175000 42544000 37716000 0 0 0 68934000 59443000 63226000 0 0 0 21284 1308 20620 395050;395051;395052;395053;395054;395055;395056;395057;395058;395059;395060;395061;395062;395063;395064;395065;395066;395067;395068;395069;395070;395071;395072;395073 242073;242074;242075;242076;242077;242078;242079 242076 7 VFTEVTVGGPLSNNK Unmodified 1560.8148 0.814772 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 2 1 1 1 1 1 33.698 32.248 2 1.0549E-35 15171 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 261.41 235.97 3860000000 254460000 228990000 213780000 4512100 4961000 3352800 411710000 395500000 407220000 8161400 7911500 10597000 357230000 333930000 327380000 2812800 2384700 2862700 278530000 293930000 291910000 5442600 7152200 5242600 21285 1184 20621 395074;395075;395076;395077;395078;395079;395080;395081;395082;395083;395084;395085;395086;395087;395088;395089;395090;395091;395092;395093;395094;395095;395096;395097;395098;395099;395100;395101 242080;242081;242082;242083;242084;242085;242086;242087;242088;242089;242090;242091;242092;242093;242094;242095;242096;242097 242091 18 VFTSLLR Unmodified 834.49634 0.49633839 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.078 29.726 2 0.0012057 13749 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.12 124.37 112570000 28166000 25390000 30846000 0 0 0 5713500 5194200 6762100 0 0 0 3117100 2441000 2309400 0 0 0 0 0 2630900 0 0 0 21286 1814 20622 395102;395103;395104;395105;395106;395107;395108;395109;395110;395111 242098;242099;242100 242100 3 VFTYYTPK Unmodified 1017.5171 0.51713341 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.663 24.366 2 0.0015887 11100 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.59 96.525 136240000 0 1725800 0 2501600 2419300 2399000 25226000 18548000 23095000 3234600 3727500 3509700 11045000 11219000 0 0 0 0 17676000 0 0 3534700 3337800 3043800 21287 324 20623 395112;395113;395114;395115;395116;395117;395118;395119;395120;395121;395122;395123;395124;395125;395126;395127 242101;242102;242103;242104;242105;242106;242107;242108;242109;242110;242111;242112;242113 242105 13 VFVAEPSVEDTIAILR Unmodified 1757.9564 0.95635086 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 2 2 2 2 3 4 1 2 2 2 3 3 3 2 2 1 1 52.425 51.134 2;3 7.0682E-14 23977 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 167.32 157.23 2693200000 323480000 298460000 303990000 5806800 8174700 6376000 268180000 280400000 282230000 11180000 12000000 12122000 141100000 131840000 145490000 0 0 0 155200000 156900000 145670000 2694300 0 1935300 21288 1662 20624 395128;395129;395130;395131;395132;395133;395134;395135;395136;395137;395138;395139;395140;395141;395142;395143;395144;395145;395146;395147;395148;395149;395150;395151;395152;395153;395154;395155;395156;395157;395158;395159;395160;395161;395162;395163;395164;395165;395166;395167;395168;395169;395170;395171 242114;242115;242116;242117;242118;242119;242120;242121;242122;242123;242124;242125;242126;242127;242128;242129;242130;242131;242132;242133;242134;242135;242136;242137;242138;242139;242140;242141;242142 242139 29 VFVEVFDEEALK Unmodified 1423.7235 0.72349737 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.272 44.782 2 1.1826E-05 21930 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 147.12 137.69 648460000 38591000 32151000 29062000 0 0 0 59138000 58258000 56996000 0 0 0 63318000 60024000 67358000 0 0 0 62374000 66055000 55140000 0 0 0 21289 86 20625 395172;395173;395174;395175;395176;395177;395178;395179;395180;395181;395182;395183 242143;242144;242145;242146;242147;242148;242149;242150;242151;242152;242153;242154 242145 12 VFVEVFDEEALKLEDVK Unmodified 2008.0405 0.040474416 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 1 1 2 1 2 2 2 2 2 1 1 51.175 49.765 3 3.7077E-11 23961 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 151.8 148.99 917470000 50208000 52357000 46804000 1063600 1216500 1161700 70838000 62862000 60571000 1542400 0 0 87050000 80281000 83619000 0 0 0 115100000 105540000 95429000 0 0 1823500 21290 86 20626 395184;395185;395186;395187;395188;395189;395190;395191;395192;395193;395194;395195;395196;395197;395198;395199;395200;395201;395202;395203;395204;395205;395206;395207;395208 242155;242156;242157;242158;242159;242160;242161;242162;242163;242164;242165;242166;242167;242168;242169;242170;242171;242172;242173;242174;242175 242167 20 VFVINPGTPNAECGVSYCPPDAVEATDTALK Unmodified 3291.5428 0.54277918 1654 P63020 nfuA Fe/S biogenesis protein NfuA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 48.758 47.473 3;4 8.8302E-13 22902 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 122.66 120.58 1795100000 129200000 142450000 134470000 2794500 3062200 0 124800000 134440000 121670000 0 0 0 145500000 128720000 154150000 0 1194300 0 194090000 188920000 189630000 0 0 0 21291 1654 20627 395209;395210;395211;395212;395213;395214;395215;395216;395217;395218;395219;395220;395221;395222;395223;395224;395225;395226;395227;395228;395229;395230;395231;395232;395233;395234;395235 242176;242177;242178;242179;242180;242181;242182;242183;242184;242185;242186;242187;242188;242189;242190;242191;242192;242193;242194 242182 19 VFVQPMK Unmodified 847.4626 0.46259542 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.379 19.882 2 0.030981 7650 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 85.306 76.623 739350000 182190000 153470000 148350000 2573800 2650100 2941800 26406000 32035000 23490000 0 0 0 29741000 29573000 19793000 0 0 0 26159000 31912000 28069000 0 0 0 21292 404 20628 395236;395237;395238;395239;395240;395241;395242;395243;395244;395245;395246;395247;395248;395249;395250 242195;242196 242196 0 VFVSEAQAIK Unmodified 1090.6023 0.60226003 1920 P77596 yagF Uncharacterized protein YagF yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 22.655 22.352 2 0.0044382 9363 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 82.426 64.517 25757000 8321800 7146200 10289000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21293 1920 20629 395251;395252;395253 242197 242197 1 VFVYGNR Unmodified 853.44464 0.44463717 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 18.273 18.818 2 0.00081047 6974 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.23 110.55 317850000 0 0 0 0 0 0 44610000 35020000 31827000 0 0 0 0 40294000 0 0 0 0 55501000 43104000 67495000 0 0 0 21294 1455 20630 395254;395255;395256;395257;395258;395259;395260;395261;395262;395263 242198;242199;242200;242201;242202;242203;242204 242202 7 VGAADDLASGR Unmodified 1030.5043 0.5043369 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.982 15.684 2 0.00010599 5244 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 118.71 102.2 250050000 17207000 20330000 15385000 1238700 911180 1246500 24070000 20903000 20086000 2173200 1541800 0 19559000 18727000 17444000 0 0 0 21128000 25758000 20834000 0 1500600 0 21295 1230 20631 395264;395265;395266;395267;395268;395269;395270;395271;395272;395273;395274;395275;395276;395277;395278;395279;395280;395281 242205;242206;242207;242208;242209;242210 242209 6 VGAAPLAAFSQIR Unmodified 1299.7299 0.72992016 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.22 38.912 2 4.6884E-06 18846 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 148.56 142.52 464620000 37579000 37638000 35865000 0 0 0 21891000 27935000 34738000 0 0 0 35801000 29439000 33078000 8564800 4991400 5970100 53305000 51125000 46704000 0 0 0 21296 1102 20632 395282;395283;395284;395285;395286;395287;395288;395289;395290;395291;395292;395293;395294;395295;395296 242211;242212;242213;242214;242215;242216;242217;242218;242219 242216 8 VGAATEVEMK Unmodified 1033.5114 0.51139611 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 3 2 1 1 1 2 1 2 1 1 1 1 1 2 2 1 1 1 16.456 16.979 2 7.6385E-07 3945 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 172.21 135.45 16874000000 1692600000 1650000000 1456200000 44999000 45535000 42769000 1424100000 1370600000 1321600000 52985000 50524000 60222000 1162800000 991600000 1012000000 13100000 9142500 9762800 1512500000 1411400000 1369400000 54024000 58642000 57179000 21297 240 20633 395297;395298;395299;395300;395301;395302;395303;395304;395305;395306;395307;395308;395309;395310;395311;395312;395313;395314;395315;395316;395317;395318;395319;395320;395321;395322;395323;395324;395325;395326;395327;395328;395329 242220;242221;242222;242223;242224;242225;242226;242227;242228;242229;242230;242231;242232;242233;242234;242235;242236;242237;242238;242239;242240;242241;242242;242243;242244;242245;242246;242247;242248;242249;242250;242251;242252;242253;242254;242255;242256;242257;242258;242259;242260;242261;242262;242263;242264 242248 44 VGAATEVEMK Oxidation (M) 1049.5063 0.50631073 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.883 12.614 2 0.0027355 3494 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 74.376 55.398 706300000 61476000 66807000 64833000 1797500 1357400 0 83019000 81971000 87205000 1952200 0 1846500 58430000 4280100 0 0 0 0 69332000 60585000 59965000 1444200 0 0 21298 240 20633 395330;395331;395332;395333;395334;395335;395336;395337;395338;395339;395340;395341;395342;395343;395344;395345 242265;242266 242265 102 0 VGAAVGAGAGNEER Unmodified 1256.6109 0.61092723 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.185 12.81 2 1.9744E-20 3574 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.78 211.74 5062100000 399920000 411800000 352840000 0 0 1237600 321010000 311920000 286960000 0 2341900 1695200 603570000 414840000 435900000 0 610060 513570 562680000 491390000 451210000 3545500 4475800 3618500 21299 788 20634 395346;395347;395348;395349;395350;395351;395352;395353;395354;395355;395356;395357;395358;395359;395360;395361;395362;395363;395364;395365 242267;242268;242269;242270;242271;242272;242273;242274;242275;242276;242277 242267 11 VGACTLVAADSETVDR Unmodified 1662.7883 0.78829925 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 1 1 2 3 3 2 2 3 2 2 2 27.133 25.961 2;3 1.3181E-18 11783 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.34 137.62 5224400000 593720000 617740000 529160000 1564400 1486700 1138600 412920000 427000000 441390000 0 0 0 337860000 330640000 329280000 0 0 0 408550000 391390000 400530000 0 0 0 21300 31 20635 395366;395367;395368;395369;395370;395371;395372;395373;395374;395375;395376;395377;395378;395379;395380;395381;395382;395383;395384;395385;395386;395387;395388;395389;395390;395391;395392;395393;395394;395395;395396;395397 242278;242279;242280;242281;242282;242283;242284;242285;242286;242287;242288;242289;242290;242291;242292;242293;242294;242295;242296;242297;242298;242299;242300;242301;242302;242303 242286 26 VGADFLK Unmodified 748.41194 0.41194006 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.402 23.489 2 0.020298 10256 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.847 56.965 678820000 64246000 65725000 63177000 0 0 0 68177000 67964000 65828000 0 564690 506870 37633000 30883000 37111000 0 0 4130600 55449000 59041000 58384000 0 0 0 21301 91 20636 395398;395399;395400;395401;395402;395403;395404;395405;395406;395407;395408;395409;395410;395411;395412 242304;242305;242306;242307;242308;242309;242310;242311;242312;242313;242314;242315 242310 12 VGADIVR Unmodified 728.41809 0.41808807 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 2 2 1 2 2 2 1 1 1 1 1 2 1 1 1 1 1 14.112 14.787 2 0.0015294 5097 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.38 53.665 1766300000 294630000 76567000 287930000 8194200 7217600 3006300 135770000 151620000 151420000 1781200 1390300 1252200 120570000 0 100740000 0 0 0 237080000 89890000 84738000 4260100 4796400 3452700 21302 1649 20637 395413;395414;395415;395416;395417;395418;395419;395420;395421;395422;395423;395424;395425;395426;395427;395428;395429;395430;395431;395432;395433;395434;395435;395436;395437;395438;395439;395440 242316;242317;242318;242319;242320;242321;242322;242323;242324 242317 7 VGAEVEEGHDYIR Unmodified 1472.6896 0.68957148 232 P0A6D3 aroA 3-phosphoshikimate 1-carboxyvinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 17.544 18.134 2;3 2.6265E-09 6643 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 175.15 144.59 568870000 54458000 46887000 50631000 0 0 0 44331000 52075000 40121000 619970 543060 337990 45263000 44255000 33844000 0 0 0 50312000 53183000 52012000 0 0 0 21303 232 20638 395441;395442;395443;395444;395445;395446;395447;395448;395449;395450;395451;395452;395453;395454;395455;395456;395457;395458;395459;395460;395461;395462;395463;395464;395465;395466;395467 242325;242326;242327;242328;242329;242330;242331;242332;242333;242334;242335;242336;242337;242338;242339;242340;242341;242342;242343;242344;242345 242337 21 VGAGPFPTELFDETGEFLCK Unmodified 2213.0351 0.035071462 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 2 2 54.922 53.468 2;3 2.3871E-38 26518 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 189.81 184.16 6365300000 545780000 544420000 530790000 5358600 0 2365100 457690000 409090000 401050000 0 0 0 577860000 536760000 553230000 0 0 0 605590000 611970000 583390000 0 0 0 21304 333 20639 395468;395469;395470;395471;395472;395473;395474;395475;395476;395477;395478;395479;395480;395481;395482;395483;395484;395485;395486;395487;395488;395489;395490;395491;395492;395493;395494 242346;242347;242348;242349;242350;242351;242352;242353;242354;242355;242356;242357;242358;242359;242360;242361;242362;242363;242364;242365;242366;242367;242368;242369 242349 24 VGAHIINDIR Unmodified 1106.6196 0.61964142 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.664 18.344 2 4.7482E-05 6764 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.14 128.79 262470000 26232000 20294000 13703000 0 0 0 21237000 21596000 26081000 0 0 0 13132000 16351000 13678000 0 0 0 28457000 25975000 35735000 0 0 0 21305 691 20640 395495;395496;395497;395498;395499;395500;395501;395502;395503;395504;395505;395506 242370;242371;242372;242373;242374;242375;242376;242377;242378 242373 9 VGAITAANR Unmodified 871.48756 0.48756462 1890 P77258 nemA N-ethylmaleimide reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.197 13.029 2 1.9691E-11 3658 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 216.01 173.01 1119900000 31722000 28942000 31723000 0 0 0 159880000 132270000 134190000 0 0 0 105730000 101160000 95114000 0 0 0 100720000 98933000 99534000 0 0 0 21306 1890 20641 395507;395508;395509;395510;395511;395512;395513;395514;395515;395516;395517;395518 242379;242380;242381;242382;242383;242384;242385;242386;242387 242380 7 VGAQFVADVVPFEMMK Unmodified 1766.8735 0.8735492 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.958 52.518 2 1.0033E-06 25588 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 131.13 125.64 358140000 68551000 48396000 51132000 0 0 0 21497000 24085000 17633000 0 0 0 26339000 25742000 18434000 0 0 0 15760000 22081000 18496000 0 0 0 21307 1508 20642 395519;395520;395521;395522;395523;395524;395525;395526;395527;395528;395529;395530 242388;242389;242390;242391;242392;242393;242394;242395;242396;242397;242398 242392 9 VGATYSR Unmodified 752.3817 0.38170256 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 2 11.147 11.695 2 0.00054974 2326 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 151.17 98.942 23268000000 166420000 0 135140000 14165000 16248000 16364000 140350000 129760000 140740000 1825400000 1513000000 1662200000 120090000 105950000 100710000 3095500000 3924400000 3446000000 192820000 194680000 229000000 1935800000 2155800000 2007300000 21308 458 20643 395531;395532;395533;395534;395535;395536;395537;395538;395539;395540;395541;395542;395543;395544;395545;395546;395547;395548;395549;395550;395551;395552;395553;395554;395555;395556;395557 242399;242400;242401;242402;242403;242404;242405;242406;242407;242408;242409;242410;242411;242412;242413;242414;242415;242416;242417 242410 19 VGDAPITPDFVLK Unmodified 1370.7446 0.74456717 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.559 42.082 2 1.3424E-05 19510 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.81 128.81 3064800000 226280000 228780000 202170000 1201000 0 0 241290000 248930000 259130000 3687000 3742200 2494600 249190000 235480000 230630000 1650600 2027700 1764100 312800000 292830000 313460000 3633400 3620500 0 21309 1360 20644 395558;395559;395560;395561;395562;395563;395564;395565;395566;395567;395568;395569;395570;395571;395572;395573;395574;395575;395576;395577;395578 242418;242419;242420;242421;242422;242423;242424;242425;242426 242426 9 VGDAVQADVDEAR Unmodified 1343.6317 0.63172225 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.562 18.971 2 3.6392E-12 7251 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 210.87 202.94 1950300000 150200000 145220000 134290000 2432600 2670900 2517100 117830000 98767000 142950000 5140300 4266500 3370200 177260000 161690000 138910000 0 0 0 214840000 219580000 222260000 1839200 2104100 2119700 21310 59 20645 395579;395580;395581;395582;395583;395584;395585;395586;395587;395588;395589;395590;395591;395592;395593;395594;395595;395596;395597;395598;395599 242427;242428;242429;242430;242431;242432;242433;242434;242435;242436;242437;242438;242439;242440;242441;242442;242443 242430 17 VGDAVQADVDEARR Unmodified 1499.7328 0.73283328 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 1 2 2 2 1 1 2 2 2 2 1 2 2 2 1 1 1 15.418 16.095 2;3 1.8235E-26 5494 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 237.49 231.95 802880000 68340000 66405000 61243000 2166000 2515800 2422900 71509000 71312000 62292000 5940700 3508800 5638000 56292000 50982000 43549000 0 1465300 0 79160000 68747000 71513000 2438100 3013100 2429100 21311 59 20646 395600;395601;395602;395603;395604;395605;395606;395607;395608;395609;395610;395611;395612;395613;395614;395615;395616;395617;395618;395619;395620;395621;395622;395623;395624;395625;395626;395627;395628;395629;395630;395631;395632;395633;395634;395635 242444;242445;242446;242447;242448;242449;242450;242451;242452;242453;242454;242455;242456;242457;242458;242459;242460;242461;242462;242463;242464;242465;242466;242467;242468 242452 25 VGDDALR Unmodified 744.37662 0.37661719 1997 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 3 2 1 1 1 3 3 3 2 2 2 24.635 24.172 2 0.055698 15330 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 61.997 19.279 413740000 25448000 20577000 21815000 0 0 0 95257000 86492000 7726000 0 3815300 3926500 29876000 28723000 27240000 0 0 0 22943000 19770000 20137000 0 0 0 + 21312 1997 20647 395636;395637;395638;395639;395640;395641;395642;395643;395644;395645;395646;395647;395648;395649;395650;395651;395652;395653;395654;395655;395656;395657;395658;395659;395660;395661;395662;395663;395664 242469;242470;242471;242472;242473 242471 4 VGDDIEIYRDETR Unmodified 1579.7478 0.74781464 1083 P13009 metH Methionine synthase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.704 22.926 3 2.5096E-05 8233 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 87.498 87.473 175380000 14789000 16420000 16807000 2570300 2545600 2133500 9203700 11365000 9148100 7448600 8064800 5677000 6348300 6036200 7730200 2598900 1931800 1878300 11625000 12629000 13283000 2522600 2624400 0 21313 1083 20648 395665;395666;395667;395668;395669;395670;395671;395672;395673;395674;395675;395676;395677;395678;395679;395680;395681;395682;395683;395684;395685;395686;395687 242474;242475;242476;242477;242478;242479;242480 242474 5 VGDEPYYPVNDNK Unmodified 1508.6783 0.6783381 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.079 22.366 2 1.5947E-07 9675 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 154.24 154.24 1232400000 57152000 48104000 51044000 0 0 0 108080000 103260000 114920000 0 0 0 101840000 103360000 102950000 0 0 0 155560000 147610000 138520000 0 0 0 21314 1491 20649 395688;395689;395690;395691;395692;395693;395694;395695;395696;395697;395698;395699 242481;242482;242483;242484;242485;242486;242487;242488;242489;242490;242491;242492 242484 12 VGDEVEILATAPAK Unmodified 1411.7559 0.75586013 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.945 32.497 2 1.2963E-08 14922 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 154.15 150 392820000 37285000 37093000 32620000 0 0 0 38148000 28619000 28085000 0 0 0 27685000 24805000 28397000 0 0 0 37652000 36211000 36218000 0 0 0 21315 1784 20650 395700;395701;395702;395703;395704;395705;395706;395707;395708;395709;395710;395711 242493;242494;242495;242496;242497;242498;242499;242500;242501;242502;242503 242501 9 VGDGTQDNLSGCEK Unmodified 1478.6307 0.63073598 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.641 13.415 2 2.0606E-81 3768 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 344.63 329.96 1430900000 133380000 111550000 116760000 5334700 4477700 3434900 238860000 293170000 278850000 8449900 8838600 9340700 41164000 29339000 32898000 0 0 0 39499000 42863000 32641000 0 0 0 21316 64 20651 395712;395713;395714;395715;395716;395717;395718;395719;395720;395721;395722;395723;395724;395725;395726;395727;395728;395729 242504;242505;242506;242507;242508;242509;242510;242511;242512;242513;242514;242515;242516;242517;242518;242519;242520 242520 17 VGDIVIFNDGYGVK Unmodified 1494.7718 0.77184455 241 P0A6F9 groS 10 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 3 1 1 1 3 3 3 1 1 1 3 4 4 1 1 2 3 4 1 1 1 43.4 41.856 2;3 2.0315E-06 20988 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 157.38 147.01 20350000000 2372400000 2128900000 2171800000 6940000 6529200 7659700 1699700000 1569100000 1507400000 6497600 4707900 5299500 1154400000 1162200000 1170400000 6704600 0 3510100 1799200000 1794800000 1759900000 5366100 3800100 2495400 21317 241 20652 395730;395731;395732;395733;395734;395735;395736;395737;395738;395739;395740;395741;395742;395743;395744;395745;395746;395747;395748;395749;395750;395751;395752;395753;395754;395755;395756;395757;395758;395759;395760;395761;395762;395763;395764;395765;395766;395767;395768;395769;395770;395771;395772;395773;395774;395775;395776;395777;395778;395779 242521;242522;242523;242524;242525;242526;242527;242528;242529;242530;242531;242532;242533;242534;242535;242536;242537;242538;242539;242540;242541;242542;242543;242544;242545;242546;242547;242548;242549;242550;242551;242552;242553;242554;242555;242556;242557;242558;242559;242560;242561 242540 39 VGDIVVSDEAR Unmodified 1158.5881 0.58806652 903 P0AF12 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.896 21.219 2 3.9277E-10 8564 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 182.65 170.6 3287100000 235410000 222410000 224190000 0 0 0 334190000 322970000 327780000 0 0 0 266010000 255790000 249660000 0 0 0 287400000 304200000 257120000 0 0 0 21318 903 20653 395780;395781;395782;395783;395784;395785;395786;395787;395788;395789;395790;395791 242562;242563;242564;242565;242566;242567;242568;242569;242570;242571 242564 10 VGDKDTGPNTGGMGAYSPAPVVTDDVHQR Unmodified 2940.3672 0.36719807 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 1 1 1 2 25.977 24.892 3;4 3.816E-16 11044 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.9 140.1 622860000 165090000 153520000 161430000 0 0 0 13080000 9795800 10807000 0 0 0 15995000 18081000 13745000 0 0 0 17100000 20328000 23890000 0 0 0 21319 1112 20654 395792;395793;395794;395795;395796;395797;395798;395799;395800;395801;395802;395803;395804;395805;395806;395807;395808;395809 242572;242573;242574;242575;242576;242577;242578 242576 7 VGDKVEAEQSLITVEGDKASMEVPSPQAGIVK Unmodified 3310.6966 0.69663728 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 38.031 36.264 4 0.00022281 12730 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 64.176 63.502 13718000 0 0 0 3206200 3484600 3653800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3373300 21320 133 20655 395810;395811;395812;395813 242579;242580;242581 242579 3 VGDLFDK Unmodified 792.40177 0.4017693 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 23.05 22.342 2 0.12323 9249 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 49.65 24.351 825640000 89819000 84694000 86400000 0 0 0 60219000 56027000 60663000 0 0 0 86487000 78441000 76514000 0 0 0 71237000 75140000 0 0 0 0 21321 333 20656 395814;395815;395816;395817;395818;395819;395820;395821;395822;395823;395824 242582;242583 242583 2 VGDLFDKETFAEK Unmodified 1497.7351 0.73512469 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 2 1 1 1 2 2 3 1 2 2 2 2 2 1 1 2 2 2 1 1 1 29.872 28.439 2;3 7.8996E-32 13253 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 311.49 286.63 10339000000 971560000 864230000 797190000 4688200 4241600 3942400 776420000 805810000 751660000 4336100 5303200 5132000 809520000 768950000 752110000 0 2096700 2692600 1027300000 972070000 1004200000 2049600 1631600 2113200 21322 333 20657 395825;395826;395827;395828;395829;395830;395831;395832;395833;395834;395835;395836;395837;395838;395839;395840;395841;395842;395843;395844;395845;395846;395847;395848;395849;395850;395851;395852;395853;395854;395855;395856;395857;395858;395859;395860;395861;395862;395863 242584;242585;242586;242587;242588;242589;242590;242591;242592;242593;242594;242595;242596;242597;242598;242599;242600;242601;242602;242603;242604;242605;242606;242607;242608 242593 23 VGDLPEGLSR Unmodified 1041.5455 0.54547343 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 25.039 24.201 2 8.5268E-05 10980 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 108.81 94.812 321500000 104270000 117450000 99787000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21323 1934 20658 395864;395865;395866;395867 242609;242610;242611 242609 3 VGDLSTEMIEHFFR Unmodified 1679.7977 0.79774172 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.531 50.387 3 2.1479E-09 18101 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 156.36 152.18 618520000 70017000 69073000 63577000 7892500 7040900 7215000 38706000 35997000 38495000 5133100 6365500 8045400 46670000 41983000 36164000 3412600 1916500 3508200 36790000 34969000 41845000 4027100 4267900 5408000 21324 139 20659 395868;395869;395870;395871;395872;395873;395874;395875;395876;395877;395878;395879;395880;395881;395882;395883;395884;395885;395886;395887;395888;395889;395890;395891 242612;242613;242614;242615;242616;242617;242618;242619;242620;242621;242622;242623 242622 12 VGDNDNLSALAAILAGADK Unmodified 1826.9374 0.93740633 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.918 53.566 2 7.9414E-14 26675 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.97 133.05 452600000 47359000 47428000 41908000 613350 0 0 36962000 29745000 33455000 0 0 0 35329000 33118000 27593000 0 7268600 0 35029000 39563000 37228000 0 0 0 21325 328 20660 395892;395893;395894;395895;395896;395897;395898;395899;395900;395901;395902;395903;395904;395905 242624;242625;242626;242627;242628 242626 5 VGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL Unmodified 3719.8359 0.83590795 966 P0AFW4 rnk Regulator of nucleoside diphosphate kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 55.292 53.824 3 2.3866E-07 25736 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 73.361 71.699 177580000 0 0 7564700 0 0 0 0 15085000 16254000 0 0 0 22980000 21483000 15501000 0 0 0 28261000 24850000 25601000 0 0 0 21326 966 20661 395906;395907;395908;395909;395910;395911;395912;395913;395914 242629;242630 242630 2 VGDTLYLCTAHQR Unmodified 1532.7406 0.7405612 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.543 20.75 3 2.6692E-05 8187 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 80.17 75.321 122440000 10593000 8128100 6920100 2593900 2786200 3117500 10447000 10719000 0 5328700 4942800 3957500 4881400 4852100 5467900 0 0 0 11444000 8524800 8927200 2744300 2648900 3412300 21327 1115 20662 395915;395916;395917;395918;395919;395920;395921;395922;395923;395924;395925;395926;395927;395928;395929;395930;395931;395932;395933;395934 242631;242632;242633;242634;242635;242636 242633 5 VGDTVIEFDLPLLEEK Unmodified 1815.9506 0.95059678 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 54.9 53.483 2;3 3.0951E-10 26456 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 196.11 177.84 14529000000 1242500000 1311400000 1247400000 13142000 13973000 14835000 1116300000 1084500000 1049900000 9163200 7804300 8609100 1262300000 1196600000 1222200000 2606000 0 0 1261100000 1174100000 1284100000 0 6318000 0 21328 1741 20663 395935;395936;395937;395938;395939;395940;395941;395942;395943;395944;395945;395946;395947;395948;395949;395950;395951;395952;395953;395954;395955;395956;395957;395958;395959;395960;395961;395962;395963;395964;395965;395966 242637;242638;242639;242640;242641;242642;242643;242644;242645;242646;242647;242648;242649;242650;242651;242652;242653;242654;242655;242656 242648 20 VGDWVNVER Unmodified 1072.5302 0.53015772 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 26.473 25.394 2 0.098356 11620 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 55.549 55.549 988010000 150260000 144120000 140330000 631620 0 739990 137130000 135940000 133390000 0 0 0 0 0 0 0 0 20290000 0 119530000 0 0 5653500 0 21329 963 20664 395967;395968;395969;395970;395971;395972;395973;395974;395975;395976;395977 242657 242657 0 VGDYTVAIGNPFGLGETVTSGIVSALGR Unmodified 2749.4287 0.42865934 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 2 2 2 1 1 1 1 2 1 1 1 55.812 54.679 2;3 3.9446E-11 21974 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 124.28 118.83 472280000 0 0 0 3943100 0 0 0 0 0 0 0 0 81190000 82848000 77286000 10644000 12346000 12385000 42297000 89599000 36117000 0 11721000 11902000 21330 1044 20665 395978;395979;395980;395981;395982;395983;395984;395985;395986;395987;395988;395989;395990;395991;395992;395993 242658;242659;242660;242661 242658 4 VGEEGVETALAATVHDR Unmodified 1752.8642 0.86424139 141 P06989 hisI Histidine biosynthesis bifunctional protein HisIE;Phosphoribosyl-AMP cyclohydrolase;Phosphoribosyl-ATP pyrophosphatase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 32.22 30.881 2;3 3.5959E-14 14944 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 163.9 158.69 584000000 63934000 56104000 60464000 0 0 0 45727000 50739000 43567000 0 0 0 40416000 36043000 33779000 0 0 0 53760000 52243000 47223000 0 0 0 21331 141 20666 395994;395995;395996;395997;395998;395999;396000;396001;396002;396003;396004;396005;396006 242662;242663;242664;242665;242666;242667;242668;242669;242670 242662 8 VGEENAAALGEYMK Unmodified 1480.6868 0.68679429 1778 P75823 ltaE Low specificity L-threonine aldolase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.973 30.634 2 0.024488 14721 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 70.488 66.471 610780000 47103000 41230000 44063000 0 0 0 66055000 66407000 65335000 0 0 0 39980000 36971000 44185000 0 0 0 54319000 57406000 47728000 0 0 0 21332 1778 20667 396007;396008;396009;396010;396011;396012;396013;396014;396015;396016;396017;396018 242671 242671 0 VGEENIFIFGHTVEQVK Unmodified 1944.9945 0.99452728 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 3 3 2 2 2 2 2 2 2 2 2 3 2 2 41.461 39.807 2;3 2.9348E-24 19855 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 264.28 234.94 2838200000 78534000 76260000 63736000 1923900 2402400 2935900 206450000 203600000 195060000 140080000 149440000 123420000 180710000 167270000 169380000 71029000 60767000 54909000 247090000 293170000 249720000 33597000 33150000 33519000 21333 30 20668 396019;396020;396021;396022;396023;396024;396025;396026;396027;396028;396029;396030;396031;396032;396033;396034;396035;396036;396037;396038;396039;396040;396041;396042;396043;396044;396045;396046;396047;396048;396049;396050;396051;396052;396053;396054;396055;396056;396057;396058;396059;396060;396061;396062;396063;396064;396065;396066 242672;242673;242674;242675;242676;242677;242678;242679;242680;242681;242682;242683;242684;242685;242686;242687;242688;242689;242690;242691;242692;242693;242694;242695;242696;242697;242698;242699;242700;242701;242702;242703;242704;242705;242706;242707 242684 36 VGEENSVTAIIQR Unmodified 1414.7416 0.74160705 1478 P37637 mdtF Multidrug resistance protein MdtF yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 31.221 29.319 2 1.3602E-05 11231 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 113.69 103.16 14930000 0 0 3438100 1080800 0 1112000 0 0 0 3902200 3339200 2058000 0 0 0 0 0 0 0 0 0 0 0 0 21334 1478 20669 396067;396068;396069;396070;396071;396072 242708;242709 242709 2 VGEEVEIVGIK Unmodified 1170.6496 0.64960415 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 5 2 2 2 4 5 5 1 1 1 3 5 6 1 1 1 5 6 4 2 1 1 34.214 32.708 2;3 2.433E-07 15510 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 162.88 144.34 97004000000 8508400000 8137300000 7537100000 95595000 85903000 96682000 7938000000 7794700000 7977200000 50041000 51684000 56087000 7905500000 7404300000 7365900000 67421000 49979000 53236000 8382900000 8773100000 8505800000 56897000 54449000 55936000 21335 1048 20670 396073;396074;396075;396076;396077;396078;396079;396080;396081;396082;396083;396084;396085;396086;396087;396088;396089;396090;396091;396092;396093;396094;396095;396096;396097;396098;396099;396100;396101;396102;396103;396104;396105;396106;396107;396108;396109;396110;396111;396112;396113;396114;396115;396116;396117;396118;396119;396120;396121;396122;396123;396124;396125;396126;396127;396128;396129;396130;396131;396132;396133;396134;396135;396136;396137;396138;396139;396140;396141;396142;396143;396144 242710;242711;242712;242713;242714;242715;242716;242717;242718;242719;242720;242721;242722;242723;242724;242725;242726;242727;242728;242729;242730;242731;242732;242733;242734;242735;242736;242737;242738;242739;242740;242741;242742;242743;242744;242745;242746;242747;242748;242749;242750;242751;242752;242753;242754;242755;242756;242757;242758;242759;242760;242761;242762;242763;242764 242757 46 VGEEVEIVGIKETQK Unmodified 1656.8934 0.89341625 1048 P0CE48;P0CE47 tufB;tufA Elongation factor Tu 2;Elongation factor Tu 1 yes no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 26.023 24.853 2;3 3.1289E-08 8150 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 162.68 162.12 151460000 0 0 0 9392300 7825400 39085000 0 3212500 2523700 8111300 13278000 8530500 0 0 0 7915900 7901000 8122400 0 2834000 0 10403000 11897000 10429000 21336 1048 20671 396145;396146;396147;396148;396149;396150;396151;396152;396153;396154;396155;396156;396157;396158;396159;396160;396161 242765;242766;242767;242768;242769;242770;242771;242772;242773;242774;242775;242776 242774 11 VGEFFGRPPLTSIDPDK Unmodified 1873.9574 0.95741349 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 2 2 2 39.617 37.924 2;3 1.9908E-18 18451 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 184.21 173.3 739930000 37703000 44090000 27496000 0 0 0 70414000 64449000 65354000 0 0 0 64516000 53602000 60741000 0 0 0 85453000 87117000 78995000 0 0 0 21337 294 20672 396162;396163;396164;396165;396166;396167;396168;396169;396170;396171;396172;396173;396174;396175;396176;396177;396178;396179;396180;396181;396182;396183 242777;242778;242779;242780;242781;242782;242783;242784;242785;242786;242787 242782 11 VGELLFNMHHDFK Unmodified 1585.7711 0.77113304 1847 P76290 cmoA tRNA (cmo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.996 30.657 3;4 0.00029194 14805 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 76.073 74.925 354010000 30289000 23896000 27039000 0 0 0 35331000 29865000 27275000 0 0 0 17669000 26344000 16483000 0 0 0 36870000 46203000 36745000 0 0 0 21338 1847 20673 396184;396185;396186;396187;396188;396189;396190;396191;396192;396193;396194;396195;396196;396197;396198;396199;396200;396201;396202;396203;396204;396205;396206;396207 242788;242789;242790;242791;242792;242793;242794;242795;242796;242797;242798 242790 11 VGELQAK Unmodified 743.41775 0.41775372 1470 P37387 xylF D-xylose-binding periplasmic protein yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 11.668 12.482 2 0.0085269 3314 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.734 1.8682 282890000 83384000 0 9171000 0 0 0 39611000 30886000 26829000 0 0 0 0 7981200 0 0 0 0 25872000 28618000 30535000 0 0 0 21339 1470 20674 396208;396209;396210;396211;396212;396213;396214;396215;396216 242799 242799 1 VGELSGGER Unmodified 902.44576 0.44575938 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.112 12.622 2 1.2028E-05 3283 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 163.99 132.7 1126100000 132400000 128450000 0 0 0 6233800 119370000 107880000 100810000 4602600 3649300 4037300 0 85206000 0 3030500 1797300 1535300 160420000 137210000 119590000 3367700 2833600 3704600 21340 561 20675 396217;396218;396219;396220;396221;396222;396223;396224;396225;396226;396227;396228;396229;396230;396231;396232;396233;396234;396235;396236 242800;242801;242802;242803;242804;242805;242806;242807;242808;242809 242809 10 VGEQLMEVLMLHK Unmodified 1525.7997 0.79965598 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.313 47.189 3 7.1715E-05 16900 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 87.18 83.734 464420000 127990000 122900000 0 39319000 42076000 41914000 0 0 0 23490000 17939000 7205400 0 0 0 4659300 4956600 6564900 0 0 0 8349700 8528200 8533900 21341 1807 20676 396237;396238;396239;396240;396241;396242;396243;396244;396245;396246;396247;396248;396249;396250 242810;242811;242812;242813;242814;242815;242816 242814 7 VGETYNIGGHNER Unmodified 1444.6695 0.66950474 1308 P27830 rffG dTDP-glucose 4,6-dehydratase 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 12.917 13.758 2;3 5.3108E-05 3937 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 92.866 88.254 301370000 15211000 17412000 18878000 0 0 0 28203000 23016000 25774000 0 0 0 28600000 21949000 23143000 0 0 0 31382000 30828000 36973000 0 0 0 21342 1308 20677 396251;396252;396253;396254;396255;396256;396257;396258;396259;396260;396261;396262;396263;396264;396265;396266;396267;396268;396269;396270;396271;396272;396273;396274 242817;242818;242819;242820;242821 242821 5 VGFDILK Unmodified 790.45889 0.45889025 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.954 35.076 2 0.022706 17341 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 74.415 29.694 828310000 94990000 89575000 74230000 1361000 1290400 1232400 100250000 98739000 94596000 931270 885200 682370 0 0 0 0 0 0 78185000 96288000 87956000 2221100 2345300 2551400 21343 1649 20678 396275;396276;396277;396278;396279;396280;396281;396282;396283;396284;396285;396286;396287;396288;396289;396290;396291;396292 242822;242823;242824;242825;242826;242827;242828;242829 242822 8 VGFFNPIASEK Unmodified 1207.6237 0.62372375 369 P0A7T3 rpsP 30S ribosomal protein S16 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 2 1 1 1 32.308 31.214 2;3 2.1663E-07 17987 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.27 118.91 3498700000 0 549450000 525420000 1568500 1765700 0 202350000 175230000 184410000 6237200 7042100 5236800 244510000 235870000 227250000 4848300 3195700 3748700 384750000 370210000 344190000 8414000 5550400 7436700 21344 369 20679 396293;396294;396295;396296;396297;396298;396299;396300;396301;396302;396303;396304;396305;396306;396307;396308;396309;396310;396311;396312;396313;396314;396315;396316;396317;396318;396319;396320;396321;396322 242830;242831;242832;242833;242834;242835;242836;242837;242838;242839;242840;242841;242842;242843;242844;242845;242846;242847;242848;242849;242850;242851;242852;242853;242854;242855 242849 24 VGFFNPIASEKEEGTR Unmodified 1779.8792 0.87916317 369 P0A7T3 rpsP 30S ribosomal protein S16 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 31.996 30.454 2;3 1.0325E-30 14193 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 240.8 200.3 6548100000 1201700000 109680000 1095000000 8030700 5740300 8144700 273890000 282450000 259930000 28954000 30831000 22869000 381450000 347410000 406320000 0 0 0 656710000 684840000 657470000 31754000 28153000 26790000 21345 369 20680 396323;396324;396325;396326;396327;396328;396329;396330;396331;396332;396333;396334;396335;396336;396337;396338;396339;396340;396341;396342;396343;396344;396345;396346;396347;396348;396349;396350;396351;396352;396353;396354;396355;396356;396357;396358;396359;396360 242856;242857;242858;242859;242860;242861;242862;242863;242864;242865;242866;242867;242868;242869;242870;242871;242872;242873;242874;242875;242876;242877;242878;242879 242868 24 VGFFNPIASEKEEGTRLDLDR Unmodified 2392.2023 0.20228822 369 P0A7T3 rpsP 30S ribosomal protein S16 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 2 1 2 2 2 2 37.366 35.776 3;4 1.0842E-15 14518 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 153.11 146.15 1816000000 68359000 62836000 61791000 64637000 59265000 69657000 8544800 9510300 14806000 163810000 155840000 143120000 0 0 5009700 149040000 118260000 115400000 15657000 0 33800000 170330000 156580000 169770000 21346 369 20681 396361;396362;396363;396364;396365;396366;396367;396368;396369;396370;396371;396372;396373;396374;396375;396376;396377;396378;396379;396380;396381;396382;396383;396384;396385;396386;396387;396388;396389;396390;396391;396392;396393;396394;396395;396396;396397 242880;242881;242882;242883;242884;242885;242886;242887;242888;242889;242890;242891;242892;242893;242894;242895;242896;242897;242898;242899;242900;242901;242902;242903 242887 24 VGFGYGK Unmodified 726.37008 0.37007525 376 P0A7W1 rpsE 30S ribosomal protein S5 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.569 18.008 2 0.068585 4915 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 59.641 59.641 4446300000 485590000 497450000 419830000 14903000 17023000 16625000 274330000 261090000 226430000 69653000 62946000 62020000 260180000 233820000 205530000 46758000 37216000 38808000 362130000 386310000 360960000 37931000 37009000 31764000 21347 376 20682 396398;396399;396400;396401;396402;396403;396404;396405;396406;396407;396408;396409;396410;396411;396412;396413;396414;396415;396416;396417;396418;396419;396420;396421 242904;242905;242906;242907;242908;242909;242910;242911;242912;242913;242914;242915;242916;242917;242918;242919;242920;242921;242922;242923;242924;242925;242926;242927 242905 24 VGFIGLGIMGK Unmodified 1090.6209 0.62088698 671 P0ABQ2 garR 2-hydroxy-3-oxopropionate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 47.749 46.338 2 0.00019164 23140 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 105.57 90.631 1245100000 125400000 130990000 116060000 0 0 0 106550000 110930000 112540000 0 0 0 128110000 121840000 104610000 0 0 0 0 93601000 94440000 0 0 0 21348 671 20683 396422;396423;396424;396425;396426;396427;396428;396429;396430;396431;396432 242928;242929;242930;242931;242932;242933;242934;242935;242936;242937 242928 10 VGFLAIANK Unmodified 931.5491 0.54910224 1106 P15078 cstA Carbon starvation protein A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 32.928 31.53 2 0.00065091 14897 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.76 89.265 67636000 19182000 16762000 19307000 2384900 1715400 2191500 0 0 0 0 0 0 0 3008300 0 0 0 0 0 0 3085000 0 0 0 21349 1106 20684 396433;396434;396435;396436;396437;396438;396439;396440 242938;242939;242940;242941 242941 3 VGFNAVHGYYIQISR Unmodified 1722.8842 0.88418897 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By MS/MS 1 37.261 34.358 3 0.081385 13808 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 38.613 34.772 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21350 1230 20685 396441 242942 242942 1 VGFRFEDGK Unmodified 1053.5243 0.52434406 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 19.481 19.64 3 0.15656 6114 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 17.512 8.5997 20961000 0 0 0 1452200 1995200 2274000 0 1857300 1539500 2228500 1938100 2079500 0 0 0 0 0 0 0 0 0 2128300 1577900 1890500 21351 1625 20686 396442;396443;396444;396445;396446;396447;396448;396449;396450;396451;396452 242943 242943 1 VGFRFEDGKK Unmodified 1181.6193 0.61930707 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 14.87 14.923 3 0.037772 3826 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 38.75 36.338 32174000 0 0 0 0 0 0 0 0 0 4426400 3510000 3319500 0 0 0 4885700 2731700 2633400 0 0 0 5592000 5074900 0 21352 1625 20687 396453;396454;396455;396456;396457;396458;396459;396460 242944 242944 1 VGGAAQTK Unmodified 730.39735 0.39735263 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 7.063 7.6903 2 9.412E-05 1008 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 162.31 135.24 3182700000 137240000 139980000 135280000 85245 88482 1834300 115840000 118630000 105970000 12796000 9900300 10832000 372240000 324070000 302840000 1501900 1359900 1223000 488770000 448510000 435640000 5838800 5652900 6532500 21353 645 20688 396461;396462;396463;396464;396465;396466;396467;396468;396469;396470;396471;396472;396473;396474;396475;396476;396477;396478;396479;396480;396481;396482;396483;396484;396485;396486 242945;242946;242947;242948;242949;242950;242951;242952;242953;242954;242955;242956;242957;242958;242959;242960;242961;242962 242954 18 VGGGVDSLSTPIGK Unmodified 1285.6878 0.68778057 775 P0AD99 brnQ Branched-chain amino acid transport system 2 carrier protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 27.066 25.731 2 0.00036128 11640 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 77.744 54.372 48827000 0 0 0 0 0 0 3607800 3695600 4354800 2395800 0 0 3288300 4440000 2610500 0 0 0 8551600 7390500 8491900 0 0 0 21354 775 20689 396487;396488;396489;396490;396491;396492;396493;396494;396495;396496 242963 242963 1 VGGIDPLIGR Unmodified 995.57638 0.57637963 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.148 31.552 2 1.9732E-05 12124 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 149.65 128.35 343130000 42766000 42856000 35141000 4358600 5309300 4402200 28807000 22362000 24629000 17774000 15912000 13730000 14916000 9361700 11735000 0 0 2960000 14998000 10652000 8656900 3827500 3998500 3979900 21355 658 20690 396497;396498;396499;396500;396501;396502;396503;396504;396505;396506;396507;396508;396509;396510;396511;396512;396513;396514;396515;396516;396517;396518 242964;242965;242966;242967;242968;242969;242970;242971 242966 4 VGGLLGGK Unmodified 699.42792 0.42792448 1533 P39377 iadA Isoaspartyl dipeptidase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.911 11.698 2 0.095726 2697 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 50.12 18.006 13162000000 0 1229600000 1152100000 18853000 14159000 16154000 0 0 1345300000 0 0 0 1225700000 1214400000 1037700000 0 0 0 1972300000 1960500000 1952700000 6808200 7958600 7640000 21356 1533 20691 396519;396520;396521;396522;396523;396524;396525;396526;396527;396528;396529;396530;396531;396532;396533 242972;242973;242974;242975;242976;242977;242978;242979;242980 242979 9 VGGLSVMCEDAEAAGR Unmodified 1620.7236 0.7235905 91 P04693 tyrB Aromatic-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 3 1 1 2 2 2 2 2 1 31.007 29.613 2;3 1.5163E-30 13856 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 228.83 205.92 848020000 99411000 87872000 80933000 0 0 587100 69898000 75955000 63209000 0 0 0 46615000 54448000 49830000 0 0 0 73205000 72553000 72597000 0 904040 0 21357 91 20692 396534;396535;396536;396537;396538;396539;396540;396541;396542;396543;396544;396545;396546;396547;396548;396549;396550;396551;396552;396553;396554;396555;396556;396557;396558 242981;242982;242983;242984;242985;242986;242987;242988;242989;242990;242991;242992;242993 242986 13 VGGMAEIVGFNTELLQPR Unmodified 1929.9982 0.99823245 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 2 2 53.088 51.702 2;3 2.7694E-45 25214 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 194.23 182.97 620700000 38167000 34053000 33007000 15595000 14428000 14598000 30105000 30749000 36587000 34784000 25888000 33736000 33154000 30760000 33273000 0 0 2078700 46668000 49842000 22053000 19496000 22602000 19079000 21358 252 20693 396559;396560;396561;396562;396563;396564;396565;396566;396567;396568;396569;396570;396571;396572;396573;396574;396575;396576;396577;396578;396579;396580;396581;396582;396583;396584;396585;396586;396587;396588;396589;396590;396591;396592;396593;396594;396595;396596;396597;396598;396599;396600 242994;242995;242996;242997;242998;242999;243000;243001;243002;243003;243004;243005;243006;243007;243008;243009;243010;243011;243012;243013;243014;243015;243016;243017;243018;243019;243020;243021;243022;243023;243024;243025;243026 243021 31 VGGSLEAAVTLYAEPELSAK Unmodified 2004.0415 0.041537049 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 3 1 1 1 2 1 49.56 48.174 2 3.4712E-14 23673 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 185.95 178.22 114050000 6677900 11399000 6366300 0 0 0 12100000 9631600 23020000 0 0 0 6370200 6279000 6003000 0 0 0 19896000 6304400 0 0 0 0 21359 58 20694 396601;396602;396603;396604;396605;396606;396607;396608;396609;396610;396611;396612;396613;396614;396615;396616 243027;243028;243029;243030;243031;243032;243033;243034;243035;243036 243027 9 VGGSTYQVPVEVR Unmodified 1389.7252 0.72522871 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 27.664 26.636 2 5.919E-08 11637 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 183.85 165.99 1982600000 368640000 358510000 297690000 0 0 0 71375000 70034000 66924000 0 0 1454000 111600000 109520000 90790000 0 626240 977500 153770000 140600000 140080000 0 0 0 21360 67 20695 396617;396618;396619;396620;396621;396622;396623;396624;396625;396626;396627;396628;396629;396630;396631;396632 243037;243038;243039;243040;243041;243042;243043;243044;243045;243046;243047;243048 243047 11 VGGSTYQVPVEVRPVR Unmodified 1741.9475 0.9475175 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 2 3 2 3 2 2 2 1 2 2 2 2 2 2 26.767 25.508 2;3 5.5141E-24 11567 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 219.92 205.23 8516000000 1436200000 1398400000 1085600000 10838000 10519000 12301000 370890000 368050000 371030000 41901000 28387000 43828000 492210000 452880000 414310000 2176000 0 0 625590000 674950000 610240000 18611000 18684000 28440000 21361 67 20696 396633;396634;396635;396636;396637;396638;396639;396640;396641;396642;396643;396644;396645;396646;396647;396648;396649;396650;396651;396652;396653;396654;396655;396656;396657;396658;396659;396660;396661;396662;396663;396664;396665;396666;396667;396668;396669;396670;396671;396672;396673;396674;396675;396676;396677;396678 243049;243050;243051;243052;243053;243054;243055;243056;243057;243058;243059;243060;243061;243062;243063;243064;243065;243066;243067;243068;243069;243070;243071;243072;243073;243074;243075;243076;243077;243078;243079;243080;243081 243062 33 VGGSTYQVPVEVRPVRR Unmodified 1898.0486 0.048628533 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 20.871 20.897 3;4 1.1078E-08 7167 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 114.69 81.378 260900000 6706100 6247100 0 24369000 27078000 30176000 0 0 0 17018000 15206000 16725000 0 0 0 15656000 12615000 11205000 0 2978100 0 25173000 29541000 20210000 21362 67 20697 396679;396680;396681;396682;396683;396684;396685;396686;396687;396688;396689;396690;396691;396692;396693;396694;396695;396696;396697;396698;396699;396700;396701;396702 243082;243083;243084;243085;243086;243087;243088;243089;243090;243091;243092;243093;243094;243095;243096 243085 15 VGGTGDGGIDGVISLDK Unmodified 1558.7839 0.7838658 1241 P24202 mrr Mrr restriction system protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.896 36.128 2 1.3958E-05 17520 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 88.552 81.29 115370000 7962800 6737900 6378300 0 0 0 14790000 11791000 11643000 682540 0 0 9663600 6352600 7104500 0 0 0 10685000 11848000 9727000 0 0 0 21363 1241 20698 396703;396704;396705;396706;396707;396708;396709;396710;396711;396712;396713;396714;396715 243097 243097 1 VGGVATYR Unmodified 821.43955 0.43955179 74 P02931 ompF Outer membrane protein F yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.099 13.735 2 0.13145 3382 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 51.787 38.116 96565000 6985400 6283700 8990400 6867800 4398900 5491700 0 0 2949300 9074200 5594500 8535300 0 0 2567400 0 0 0 6355200 6944800 0 5839000 5595600 4091400 21364 74 20699 396716;396717;396718;396719;396720;396721;396722;396723;396724;396725;396726;396727;396728;396729;396730;396731 243098 243098 0 VGHLNLTDSDTSR Unmodified 1413.6848 0.68482046 196 P09029 purK N5-carboxyaminoimidazole ribonucleotide synthase yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 14.738 15.679 2 0.076518 5062 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 40.589 30.585 14019000 0 0 0 0 0 0 0 0 0 0 0 0 4710800 4984400 4324000 0 0 0 0 0 0 0 0 0 21365 196 20700 396732;396733;396734 243099 243099 1 VGIGGLEGR Unmodified 856.47667 0.47666558 1767 P75745 ybgK Uncharacterized protein YbgK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 2 1 1 1 1 1 1 1 2 2 20.995 21.378 2 0.0046387 8551 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.318 52.686 283670000 47628000 42463000 36185000 0 0 0 18602000 22843000 19264000 0 0 0 13663000 12029000 10549000 0 0 0 19434000 21752000 19257000 0 0 0 21366 1767 20701 396735;396736;396737;396738;396739;396740;396741;396742;396743;396744;396745;396746;396747;396748;396749;396750 243100;243101;243102;243103;243104;243105;243106;243107;243108;243109 243104 9 VGIGPGSICTTR Unmodified 1216.6234 0.62340617 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.365 23.468 2 7.9997E-05 10293 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 125.68 118.2 6448100000 520590000 535490000 515690000 0 0 0 429150000 448670000 419070000 0 0 0 590000000 538640000 588200000 0 0 0 603030000 642330000 617250000 0 0 0 21367 788 20702 396751;396752;396753;396754;396755;396756;396757;396758;396759;396760;396761;396762 243110;243111;243112;243113;243114;243115;243116;243117;243118;243119;243120;243121 243114 12 VGIGPGSVCTTR Unmodified 1202.6078 0.60775611 1623 P60560 guaC GMP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.419 20.828 2 5.8056E-05 8107 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 125.75 116.88 2894400000 276420000 245450000 241500000 943290 1074700 889840 200440000 197780000 198790000 0 0 0 233660000 219150000 193620000 0 0 0 286390000 306510000 291820000 0 0 0 21368 1623 20703 396763;396764;396765;396766;396767;396768;396769;396770;396771;396772;396773;396774;396775;396776;396777 243122;243123;243124;243125;243126;243127;243128;243129;243130;243131 243128 6 VGIGPSSSHTVGPMK Unmodified 1452.7395 0.73949856 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 16.818 17.385 2;3 6.3191E-15 6138 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 204.17 193.72 2027900000 113200000 130300000 125120000 0 0 0 218340000 199000000 210720000 7787000 0 0 171870000 153010000 137740000 5298500 3557700 3545300 181090000 189190000 175640000 2508100 0 0 21369 1117 20704 396778;396779;396780;396781;396782;396783;396784;396785;396786;396787;396788;396789;396790;396791;396792;396793;396794;396795;396796;396797;396798;396799;396800;396801;396802;396803;396804;396805;396806;396807;396808 243132;243133;243134;243135;243136;243137;243138;243139;243140;243141;243142;243143;243144;243145;243146;243147;243148;243149;243150;243151 243144 20 VGIGWTAR Unmodified 858.47119 0.47118627 1296 P27250 ahr Aldehyde reductase Ahr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 25.476 24.387 2 0.0003704 11264 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143 107.9 357730000 53543000 54562000 49045000 0 0 0 36649000 36644000 39552000 0 0 0 12817000 13193000 12544000 0 0 0 17837000 15247000 16096000 0 0 0 21370 1296 20705 396809;396810;396811;396812;396813;396814;396815;396816;396817;396818;396819;396820 243152;243153;243154;243155;243156;243157;243158;243159;243160;243161;243162 243152 11 VGINELLR Unmodified 912.53927 0.53926584 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.488 32.91 2 5.1677E-05 14919 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 170.73 108.01 4891100000 595560000 558200000 460780000 0 2526500 0 363390000 367810000 349430000 0 1245400 1231000 325520000 333350000 273980000 0 0 0 409680000 410350000 438080000 0 0 0 21371 512 20706 396821;396822;396823;396824;396825;396826;396827;396828;396829;396830;396831;396832;396833;396834;396835 243163;243164;243165;243166;243167;243168;243169;243170;243171;243172;243173;243174 243174 12 VGINGFGR Unmodified 818.43989 0.43988615 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.468 21.9 2 0.0001858 9592 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.67 134.87 4894300000 380690000 290520000 270570000 7952300 3972800 4790000 508660000 525530000 480990000 7982900 6490100 6008400 358100000 309050000 286600000 3318500 2130200 3727300 478550000 452060000 506560000 0 0 0 21372 504 20707 396836;396837;396838;396839;396840;396841;396842;396843;396844;396845;396846;396847;396848;396849;396850;396851;396852;396853;396854;396855;396856 243175;243176;243177;243178;243179;243180;243181;243182;243183;243184;243185;243186;243187;243188;243189;243190 243177 14 VGIVFGGK Unmodified 775.45922 0.4592246 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.306 24.356 2 0.0038537 10650 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.086 44.878 756290000 63349000 65048000 0 0 0 0 88130000 79199000 73702000 0 0 0 63224000 50281000 51957000 0 410150 574880 78704000 69011000 72696000 0 0 0 21373 253 20708 396857;396858;396859;396860;396861;396862;396863;396864;396865;396866;396867;396868;396869;396870 243191;243192;243193;243194;243195;243196;243197;243198;243199;243200;243201;243202 243199 12 VGIVYNYANASDLPAK Unmodified 1693.8675 0.86753585 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.224 33.785 2 5.1295E-10 16159 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 142.08 136.11 3498900000 10654000 9754000 9036700 820530 806470 0 538120000 475990000 474320000 1313900 1816400 0 377700000 396270000 367370000 1669300 858470 878470 278460000 286800000 262190000 1766300 0 2305500 21374 40 20709 396871;396872;396873;396874;396875;396876;396877;396878;396879;396880;396881;396882;396883;396884;396885;396886;396887;396888;396889;396890;396891 243203;243204;243205;243206;243207;243208;243209;243210;243211;243212;243213 243206 11 VGIYFGMK Unmodified 913.47316 0.47316011 405 P0A879 trpB Tryptophan synthase beta chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 35.693 33.354 2 0.016071 15673 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 73.039 64.885 12130000 0 0 0 1864200 0 0 0 0 0 4894100 3085300 2286800 0 0 0 0 0 0 0 0 0 0 0 0 21375 405 20710 396892;396893;396894;396895;396896;396897;396898;396899 243214;243215;243216;243217;243218 243218 5 VGKEFASEPVWFGDSDR Unmodified 1924.8955 0.89554151 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 2 36.18 34.365 3 2.6843E-06 13620 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 76.378 74.307 51044000 0 0 0 5952600 5354800 3592100 0 0 0 5470500 4879000 5562800 0 0 0 0 0 2187700 0 0 0 5690500 5582500 6771800 21376 844 20711 396900;396901;396902;396903;396904;396905;396906;396907;396908;396909;396910;396911;396912;396913 243219;243220;243221;243222;243223;243224;243225 243220 7 VGLDHVLLVK Unmodified 1091.6703 0.67028001 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 30.743 29.467 2;3 6.6438E-05 13699 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 133.57 116.8 1420900000 541780000 470710000 405130000 1113800 1074300 1075800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21377 1888 20712 396914;396915;396916;396917;396918;396919;396920;396921;396922 243226;243227;243228;243229;243230;243231 243229 6 VGLETLLGVLNASSR Unmodified 1527.8621 0.86205654 1273 P25746 hflD High frequency lysogenization protein HflD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.036 53.575 2 5.0136E-06 21522 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 103.88 87.627 103680000 7152200 0 7391900 3991500 3408800 4323400 5232300 2908700 2870000 3030500 3768600 6081000 4922300 0 6364200 0 0 0 6679400 8249100 9233000 7083300 5926900 5060800 21378 1273 20713 396923;396924;396925;396926;396927;396928;396929;396930;396931;396932;396933;396934;396935;396936;396937;396938;396939;396940;396941 243232 243232 1 VGLFGGAGVGK Unmodified 960.53927 0.53926584 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.52 28.213 2 0.00019164 10426 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 105.57 82.139 8554400000 200200000 182540000 163920000 77863000 67013000 75985000 744990000 708320000 660550000 254810000 264830000 277990000 577230000 656050000 532600000 55118000 37958000 40296000 774400000 802630000 781560000 223460000 208420000 185660000 21379 646 20714 396942;396943;396944;396945;396946;396947;396948;396949;396950;396951;396952;396953;396954;396955;396956;396957;396958;396959;396960;396961;396962;396963;396964;396965 243233;243234;243235;243236;243237;243238;243239;243240;243241;243242;243243;243244;243245;243246;243247;243248;243249;243250;243251;243252;243253;243254;243255;243256;243257;243258;243259;243260;243261;243262;243263;243264;243265;243266 243245 34 VGLFQDTSAF Unmodified 1083.5237 0.52367535 271 P0A6Q3 fabA 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.162 51.735 2 0.075522 25714 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 58.194 58.194 3956800000 402980000 385920000 356510000 3003400 0 2740400 249420000 245280000 242590000 0 0 0 389710000 350010000 379690000 0 0 0 331780000 312130000 305080000 0 0 0 21380 271 20715 396966;396967;396968;396969;396970;396971;396972;396973;396974;396975;396976;396977;396978;396979 243267;243268;243269;243270 243267 4 VGLIAGSGGGSPR Unmodified 1126.6095 0.60947067 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.582 19.088 2 5.2623E-09 7091 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.93 155.26 14384000000 1938500000 1801700000 1522100000 5671400 5636100 5497900 1124000000 1064800000 1088500000 2779000 2603900 0 1010800000 921790000 829190000 0 0 0 1048900000 984600000 1027000000 0 0 0 21381 489 20716 396980;396981;396982;396983;396984;396985;396986;396987;396988;396989;396990;396991;396992;396993;396994;396995;396996 243271;243272;243273;243274;243275;243276;243277;243278;243279;243280;243281;243282;243283;243284;243285;243286;243287 243282 17 VGLIGYGYASK Unmodified 1126.6023 0.60226003 1902 P77376 ydgJ Uncharacterized oxidoreductase YdgJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.736 29.38 2 0.0026277 13768 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 69.276 61.336 135880000 17067000 14094000 14640000 0 0 0 12145000 10368000 11391000 0 0 0 8375600 5390100 9757500 0 0 0 12242000 10837000 9576300 0 0 0 21382 1902 20717 396997;396998;396999;397000;397001;397002;397003;397004;397005;397006;397007;397008 243288 243288 1 VGLLPNLINR Unmodified 1107.6764 0.67642802 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.43 41.851 2 9.3195E-06 16837 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 154.35 136.31 936380000 123080000 127810000 108490000 47813000 42267000 40277000 36765000 34038000 30969000 38036000 35871000 28584000 23428000 19646000 22804000 5542600 0 7594600 40300000 36008000 40963000 15164000 15632000 15299000 21383 1935 20718 397009;397010;397011;397012;397013;397014;397015;397016;397017;397018;397019;397020;397021;397022;397023;397024;397025;397026;397027;397028;397029;397030;397031 243289;243290;243291;243292;243293;243294;243295;243296;243297;243298;243299 243291 11 VGLLPNLINRYPHEFSGGQCQR Unmodified 2554.2863 0.2863094 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 37.205 35.485 3 0.0033561 12471 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 53.553 50.397 10959000 0 0 0 3390400 4277600 3291200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21384 1935 20719 397032;397033;397034 243300;243301;243302 243301 3 VGLLTGDVAQK Unmodified 1099.6237 0.62372375 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.251 25.021 2 3.9857E-05 11161 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 101.9 77.02 277370000 44510000 35561000 0 4816300 0 0 26760000 22430000 21176000 3299000 4047000 3754900 20965000 0 0 0 1294900 907310 38983000 39087000 0 3684100 2763800 3333400 21385 438 20720 397035;397036;397037;397038;397039;397040;397041;397042;397043;397044;397045;397046;397047;397048;397049;397050;397051;397052 243303;243304;243305;243306;243307;243308;243309;243310 243307 8 VGLSFSLPIYQGGMVNSQVK Unmodified 2123.1085 0.10851118 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 52.859 51.504 3 4.5333E-05 21009 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.238 75.028 35349000 0 0 0 0 0 0 0 0 0 6541300 5606500 3488700 0 0 2336200 0 0 0 5399400 3186500 3101800 2570600 0 3118000 21386 73 20721 397053;397054;397055;397056;397057;397058;397059;397060;397061 243311 243311 1 VGLSPTPCLER Unmodified 1227.6282 0.6281572 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.187 26.087 2 1.4179E-07 12083 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 170.18 150.39 1190100000 177550000 162110000 138330000 2260100 0 4029100 28825000 32069000 29579000 0 0 3011600 17011000 0 0 230560000 141400000 161590000 29042000 0 23130000 3607000 3071400 2946800 21387 733 20722 397062;397063;397064;397065;397066;397067;397068;397069;397070;397071;397072;397073;397074;397075;397076;397077;397078;397079;397080;397081;397082 243312;243313;243314;243315;243316;243317;243318;243319;243320;243321;243322;243323;243324;243325;243326;243327;243328;243329;243330;243331 243319 17 VGLTNEELQK Unmodified 1129.5979 0.59790293 825 P0AE01 trmJ tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 3 3 3 1 1 1 3 3 3 1 3 3 3 3 4 3 1 1 1 18.525 19.061 2;3 1.2146E-05 7301 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 153.08 128.13 3411700000 236000000 243480000 209030000 1912000 1311800 992360 331130000 328210000 304220000 0 0 1930400 248820000 225070000 223650000 0 0 0 374120000 363400000 313760000 1920800 1251000 1462100 21388 825 20723 397083;397084;397085;397086;397087;397088;397089;397090;397091;397092;397093;397094;397095;397096;397097;397098;397099;397100;397101;397102;397103;397104;397105;397106;397107;397108;397109;397110;397111;397112;397113;397114;397115;397116;397117;397118;397119;397120;397121;397122;397123;397124;397125;397126 243332;243333;243334;243335;243336;243337;243338;243339;243340;243341;243342;243343;243344;243345;243346;243347;243348;243349 243340 18 VGLVDKPNFR Unmodified 1143.64 0.64004252 706 P0AC78 wecA Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.367 20.372 3 0.0068275 8283 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 61.78 53.306 31168000 0 0 0 1271700 1188200 1026400 12681000 0 0 4247000 2704700 4563100 0 0 0 861480 0 994630 0 0 0 0 1630100 0 21389 706 20724 397127;397128;397129;397130;397131;397132;397133;397134;397135;397136;397137;397138 243350;243351;243352;243353 243352 3 VGLYEAVR Unmodified 905.49707 0.49706667 1330 P29208 menC o-succinylbenzoate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 23.312 22.592 2 0.00075373 9764 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.59 85.788 301790000 24702000 21773000 18217000 0 0 789250 26658000 24776000 19979000 0 0 0 25315000 22034000 23803000 0 0 0 27234000 33119000 33388000 0 0 0 21390 1330 20725 397139;397140;397141;397142;397143;397144;397145;397146;397147;397148;397149;397150;397151 243354;243355;243356;243357;243358;243359;243360;243361;243362;243363;243364;243365 243358 12 VGMGTCQGELCACR Unmodified 1597.6469 0.64693686 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.771 20.94 2 3.5121E-20 7850 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 222.18 222.18 388430000 0 3914200 0 0 0 0 67602000 58059000 50139000 4351400 3899000 3102200 41744000 36935000 33553000 0 0 0 23623000 31836000 28279000 0 1390900 0 21391 506 20726 397152;397153;397154;397155;397156;397157;397158;397159;397160;397161;397162;397163;397164;397165 243366;243367;243368;243369;243370;243371;243372;243373;243374;243375 243375 10 VGMGTCQGELCACR Oxidation (M) 1613.6419 0.64185148 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.723 15.515 2 7.4969E-20 5207 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 219.72 219.72 141520000 0 0 0 0 0 0 22804000 23324000 17225000 0 0 0 23215000 16584000 12971000 0 0 0 7729700 9165400 8501500 0 0 0 21392 506 20726 397166;397167;397168;397169;397170;397171;397172;397173;397174 243376;243377;243378;243379;243380 243377 311 5 VGMPDCSGVALGVDR Unmodified 1531.7123 0.71229754 450 P0A8N7 epmA Elongation factor P--(R)-beta-lysine ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.406 31.802 2 4.5538E-06 14994 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.49 123.97 208340000 13782000 14784000 11486000 704220 0 0 13506000 13514000 13475000 0 1417800 1903200 18180000 14417000 15823000 0 0 0 22309000 26103000 23545000 1792100 1596400 0 21393 450 20727 397175;397176;397177;397178;397179;397180;397181;397182;397183;397184;397185;397186;397187;397188;397189;397190;397191 243381;243382;243383;243384;243385;243386;243387 243383 7 VGMTEEQAR Unmodified 1019.4706 0.47059393 1886 P77212 rclA Probable pyridine nucleotide-disulfide oxidoreductase RclA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 11.972 12.671 2 0.016741 3516 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.465 48.07 59551000 22865000 17368000 19318000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21394 1886 20728 397192;397193;397194 243388;243389;243390 243388 2 VGMVFQK Unmodified 807.4313 0.43129529 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 20.574 21.01 2 0.0096235 8591 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 87.627 55.116 129090000 0 0 10056000 0 0 0 0 16371000 0 0 0 0 17456000 13765000 16843000 0 0 585040 0 23536000 30480000 0 0 0 21395 594 20729 397195;397196;397197;397198;397199;397200;397201;397202 243391;243392;243393 243391 3 VGMVFQKPTPFPMSIYDNIAFGVR Unmodified 2713.376 0.37603561 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 3 2 1 1 1 1 1 2 2 1 2 53.948 52.72 2;3 2.1011E-30 21162 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 186.7 183.66 1144100000 0 0 0 3298100 4012100 3990800 0 0 47933000 148310000 149060000 132820000 0 0 3905000 57333000 48131000 38001000 0 102030000 0 149900000 110280000 145150000 21396 594 20730 397203;397204;397205;397206;397207;397208;397209;397210;397211;397212;397213;397214;397215;397216;397217;397218;397219;397220;397221;397222;397223 243394;243395;243396;243397;243398;243399;243400;243401;243402;243403 243400 10 VGNDFIIIYR Unmodified 1208.6554 0.65535823 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 38.126 36.94 2;3 0.00038268 19937 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.68 93.63 203980000 25888000 23442000 18743000 0 0 0 0 0 0 0 0 0 0 0 130070000 0 0 0 2770000 0 3067700 0 0 0 21397 1554 20731 397224;397225;397226;397227;397228;397229 243404;243405;243406;243407 243404 4 VGNFMDDSAITAK Oxidation (M) 1383.634 0.63403044 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 5 3 5 3 3 1 1 2 1 1 2 1 23.253 22.591 2 8.3879E-11 10277 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.89 120.54 489430000 87938000 157610000 117020000 0 0 0 23015000 39948000 12336000 0 0 0 7540500 11755000 7459000 0 0 0 6973400 12867000 4970700 0 0 0 21398 943 20732 397230;397231;397232;397233;397234;397235;397236;397237;397238;397239;397240;397241;397242;397243;397244;397245;397246;397247;397248;397249;397250;397251;397252;397253;397254;397255;397256;397257 243408;243409;243410;243411;243412;243413;243414;243415;243416;243417;243418;243419;243420;243421;243422;243423;243424;243425;243426;243427;243428;243429 243416 450 21 VGNFMDDSAITAK Unmodified 1367.6391 0.63911582 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 1 1 1 1 1 2 2 1 1 2 2 1 31.278 29.811 2;3 2.819E-06 14276 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.82 111.52 15720000000 3977200000 3846600000 3330300000 4923300 4117900 4118200 716400000 712570000 719770000 1745800 1594600 1408600 255450000 244260000 222600000 0 0 0 556670000 557610000 561680000 0 715640 0 21399 943 20732 397258;397259;397260;397261;397262;397263;397264;397265;397266;397267;397268;397269;397270;397271;397272;397273;397274;397275;397276;397277;397278;397279;397280;397281;397282;397283 243430;243431;243432;243433;243434;243435;243436;243437;243438;243439;243440;243441;243442;243443;243444;243445 243436 15 VGNLAFLDVTGR Unmodified 1260.6826 0.68263561 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.935 42.59 2 2.3076E-06 20814 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.6 157.5 682170000 131050000 126200000 107890000 0 0 0 37127000 32887000 39205000 9558700 9135100 0 23487000 23519000 23716000 5644600 4347700 3808400 31959000 35633000 37020000 0 0 0 21400 734 20733 397284;397285;397286;397287;397288;397289;397290;397291;397292;397293;397294;397295;397296;397297;397298;397299;397300 243446;243447;243448;243449;243450;243451;243452;243453;243454;243455;243456;243457 243452 11 VGNLFSADLFYSPDGEMFDVMEK Unmodified 2610.1658 0.16582764 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.445 53.972 2;3 1.085E-43 26761 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 235.26 230.2 1712100000 54516000 35826000 41206000 0 0 0 276150000 218750000 279890000 0 0 0 55765000 55005000 44842000 0 0 0 211040000 207780000 231350000 0 0 0 21401 669 20734 397301;397302;397303;397304;397305;397306;397307;397308;397309;397310;397311;397312;397313;397314;397315;397316;397317;397318;397319;397320;397321;397322;397323;397324 243458;243459;243460;243461;243462;243463;243464;243465;243466;243467;243468;243469;243470;243471 243462 14 VGNQLGLR Unmodified 855.49265 0.49265 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.606 17.363 2 0.00017816 6212 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 154.11 126.8 579360000 45450000 40242000 38133000 0 0 0 83300000 75600000 67131000 0 0 0 35809000 41021000 29887000 0 0 0 44900000 42005000 35881000 0 0 0 21402 801 20735 397325;397326;397327;397328;397329;397330;397331;397332;397333;397334;397335;397336 243472 243472 1 VGNWAGVTVER Unmodified 1186.6095 0.60947067 1431 P33650 feoB Ferrous iron transport protein B yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 1 2 1 1 2 1 1 3 3 1 25.2 24.045 2;3 0.1164 8469 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 20.788 14.755 436940000 0 0 0 33703000 16714000 24397000 0 0 0 7431800 5505400 13040000 0 0 0 2942900 0 3549600 0 0 0 160440000 153770000 15442000 21403 1431 20736 397337;397338;397339;397340;397341;397342;397343;397344;397345;397346;397347;397348;397349;397350;397351;397352;397353;397354 243473;243474;243475;243476;243477 243475 5 VGPALTFALR Unmodified 1043.6128 0.61276513 1046 P0C8J8;P0C8K0 gatZ;kbaZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ;D-tagatose-1,6-bisphosphate aldolase subunit KbaZ yes no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.337 38.71 2 0.00013278 15143 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 127.46 115.69 126540000 3332900 2651500 2443800 7210900 9100000 7851400 5949100 5822100 4756000 15190000 8340200 8742200 0 0 1996200 9249000 4955800 5959400 2446400 0 1688400 6209400 5627700 7016600 21404 1046 20737 397355;397356;397357;397358;397359;397360;397361;397362;397363;397364;397365;397366;397367;397368;397369;397370;397371;397372;397373;397374;397375 243478;243479;243480;243481;243482;243483;243484;243485;243486;243487 243484 10 VGPGELMVIDTR Unmodified 1285.67 0.67002202 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.741 36.9 2 2.9444E-05 17716 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 115.57 106.71 829910000 153250000 135050000 166930000 918990 775580 0 60959000 52324000 48890000 869040 915290 1322600 28008000 29610000 30374000 0 0 0 41432000 42815000 35477000 0 0 0 21405 218 20738 397376;397377;397378;397379;397380;397381;397382;397383;397384;397385;397386;397387;397388;397389;397390;397391;397392 243488;243489;243490;243491;243492;243493;243494;243495;243496;243497;243498;243499 243496 11 VGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEK Unmodified 4456.136 0.13600615 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 3 3 3 2 3 2 1 1 1 2 1 1 1 51.091 49.796 3;4;5 6.6594E-23 24463 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 146.61 145.51 882150000 14742000 11913000 0 10332000 11841000 13007000 48091000 33011000 35984000 130590000 108770000 126650000 40578000 51421000 36762000 2844300 0 0 42228000 46237000 57450000 18085000 19645000 21971000 21406 1944 20739 397393;397394;397395;397396;397397;397398;397399;397400;397401;397402;397403;397404;397405;397406;397407;397408;397409;397410;397411;397412;397413;397414;397415;397416;397417;397418;397419;397420;397421;397422;397423;397424;397425;397426;397427 243500;243501;243502;243503;243504;243505;243506;243507;243508;243509;243510;243511;243512;243513;243514;243515;243516;243517 243508 18 VGQILEEPLLINTSLSK Unmodified 1853.051 0.050979523 1463 P37313 dppF Dipeptide transport ATP-binding protein DppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 50.02 48.666 2 4.5297E-10 17457 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 134.68 134.48 93167000 25630000 21775000 21445000 6453000 6719300 6019600 0 0 0 0 0 0 0 0 0 0 0 0 0 2978600 2146000 0 0 0 21407 1463 20740 397428;397429;397430;397431;397432;397433;397434;397435 243518;243519;243520;243521;243522;243523 243520 6 VGSCGAVLPHVK Unmodified 1222.6492 0.64922699 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 1 16.496 17.268 2;3 8.1626E-14 6223 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 157.34 150.15 2206100000 49394000 39335000 34851000 0 0 0 469890000 453330000 453140000 0 0 0 56866000 43866000 39292000 0 0 0 177370000 200960000 187840000 0 0 0 21408 669 20741 397436;397437;397438;397439;397440;397441;397442;397443;397444;397445;397446;397447;397448;397449;397450;397451;397452;397453;397454;397455 243524;243525;243526;243527;243528;243529;243530;243531;243532;243533;243534;243535;243536;243537;243538;243539;243540;243541;243542;243543 243527 18 VGSDNLLMINAHIAHDCTVGNR Unmodified 2406.1532 0.15324631 302 P0A722 lpxA Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.735 30.387 3 1.3347E-06 14177 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.73 90.586 106060000 17083000 12648000 13722000 0 0 0 8145700 9725200 6233000 0 0 0 3242300 4768300 5688900 0 0 0 7824400 8772400 8208200 0 0 0 21409 302 20742 397456;397457;397458;397459;397460;397461;397462;397463;397464;397465;397466;397467 243544;243545;243546;243547 243547 4 VGSFDGGWGASYMAR Unmodified 1559.6827 0.68271197 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.21 37.531 2 3.0195E-20 17377 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 214.26 204.94 1465400000 77060000 73970000 64019000 25278000 29203000 27769000 121050000 111990000 115390000 0 0 2843100 97966000 95178000 91542000 2564800 0 0 126710000 118140000 110760000 60395000 55836000 57691000 21410 679 20743 397468;397469;397470;397471;397472;397473;397474;397475;397476;397477;397478;397479;397480;397481;397482;397483;397484;397485;397486;397487 243548;243549;243550;243551;243552;243553;243554;243555;243556;243557;243558;243559;243560;243561;243562;243563;243564;243565;243566;243567 243567 20 VGSLGWANK Unmodified 930.49232 0.49231565 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.405 21.393 2 4.2936E-05 7283 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 150.84 130.28 971230000 0 0 0 35516000 35724000 30518000 36694000 36871000 39033000 119610000 59188000 98925000 39456000 0 39069000 27036000 20312000 20029000 54652000 64503000 63033000 50992000 50689000 49374000 21411 144 20744 397488;397489;397490;397491;397492;397493;397494;397495;397496;397497;397498;397499;397500;397501;397502;397503;397504;397505;397506;397507 243568;243569;243570;243571;243572;243573;243574;243575;243576;243577;243578;243579;243580 243571 12 VGSVETSTFDTQKR Unmodified 1553.7686 0.76855009 1563 P43671 pqiB Paraquat-inducible protein B yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 15.341 15.584 3 0.020399 4308 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 42.568 38.508 16704000 0 0 0 0 0 1850100 0 0 0 0 3392100 4124200 0 0 0 1429900 0 1038000 0 0 0 1815600 1538800 1515600 21412 1563 20745 397508;397509;397510;397511;397512;397513;397514;397515 243581 243581 1 VGTAQELATLR Unmodified 1157.6404 0.64043645 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.655 24.583 2 0.023452 10523 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 70.552 62.331 188000000 47661000 42694000 40204000 0 0 0 10131000 9285200 9282200 0 0 0 5035800 4503600 3826700 0 0 0 4446200 4713200 6214600 0 0 0 21413 1814 20746 397516;397517;397518;397519;397520;397521;397522;397523;397524;397525;397526;397527 243582 243582 0 VGTPAITR Unmodified 813.47085 0.47085192 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 13.799 14.685 1;2 0.00029228 4622 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.52 123.55 9300700000 1466000000 1536900000 1258600000 0 5805600 4676600 594290000 667990000 680680000 0 0 0 425970000 423790000 385660000 0 0 0 606480000 626310000 617570000 0 0 0 21414 391 20747 397528;397529;397530;397531;397532;397533;397534;397535;397536;397537;397538;397539;397540;397541;397542;397543;397544;397545;397546;397547;397548;397549;397550;397551;397552;397553 243583;243584;243585;243586;243587;243588;243589;243590;243591;243592;243593 243583 11 VGTPFFVR Unmodified 921.50724 0.50723743 1159 P19636 eutC Ethanolamine ammonia-lyase light chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.023 31.563 2 0.0078415 15254 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 82.671 72.922 56172000 7494600 8770700 5597400 801340 0 0 3577200 5354000 4907200 0 0 0 3480600 3538900 3194500 0 0 0 4537200 4918500 0 0 0 0 21415 1159 20748 397554;397555;397556;397557;397558;397559;397560;397561;397562;397563;397564;397565 243594;243595 243594 2 VGTVTPNVAEAVK Unmodified 1283.7085 0.70851601 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.952 23.139 2 8.6546E-07 10023 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.22 120.16 8211500000 1175900000 1101200000 1027900000 72403000 68177000 62841000 283940000 256460000 265230000 0 0 112920000 468470000 431160000 490200000 76219000 48159000 48447000 713140000 670910000 605860000 80830000 79424000 71753000 21416 353 20749 397566;397567;397568;397569;397570;397571;397572;397573;397574;397575;397576;397577;397578;397579;397580;397581;397582;397583;397584;397585;397586;397587;397588 243596;243597;243598;243599;243600;243601;243602;243603;243604;243605;243606;243607;243608;243609;243610;243611;243612;243613;243614;243615;243616;243617 243611 22 VGVDSVLVADVPVEESAPFR Unmodified 2084.079 0.078985188 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 51.766 50.518 2;3 1.9425E-37 24510 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 303.04 300.09 1046600000 240520000 231370000 212100000 2714900 2150000 1488300 36741000 32715000 33400000 0 0 0 42414000 38012000 38452000 0 0 0 42325000 42583000 49588000 0 0 0 21417 404 20750 397589;397590;397591;397592;397593;397594;397595;397596;397597;397598;397599;397600;397601;397602;397603;397604;397605;397606;397607;397608;397609;397610;397611;397612;397613;397614;397615 243618;243619;243620;243621;243622;243623;243624;243625;243626;243627;243628;243629;243630;243631;243632 243628 15 VGVENLVNAVPQLK Unmodified 1478.8457 0.84567819 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.393 43.993 2;3 4.0214E-06 20421 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 84.297 48.77 426930000 0 0 0 1610600 1886700 1422800 0 27023000 25691000 3333200 1632700 3490300 25777000 0 20945000 3381600 2859400 3012200 12392000 273140000 15279000 2299300 0 1755400 21418 40 20751 397616;397617;397618;397619;397620;397621;397622;397623;397624;397625;397626;397627;397628;397629;397630;397631;397632;397633 243633;243634;243635;243636;243637 243636 5 VGVETFK Unmodified 778.4225 0.42250475 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.64 18.159 2 0.0053367 6642 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 100.07 67.953 1503300000 111270000 104450000 100770000 5073200 2587400 4441400 148780000 127590000 129710000 3351600 3504700 1351700 122610000 109120000 94594000 0 1100800 0 123720000 143710000 154180000 780450 6305000 4342300 21419 1143 20752 397634;397635;397636;397637;397638;397639;397640;397641;397642;397643;397644;397645;397646;397647;397648;397649;397650;397651;397652;397653;397654;397655;397656;397657;397658;397659;397660 243638;243639;243640;243641;243642;243643;243644 243640 6 VGVGLGTNYEEWLR Unmodified 1591.7995 0.79945628 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.482 46.092 2 1.8264E-15 22948 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 201.75 197.73 3782000000 466800000 419940000 390670000 0 0 0 379960000 373090000 322220000 0 0 0 239620000 219150000 210700000 0 0 0 253030000 257050000 249800000 0 0 0 21420 874 20753 397661;397662;397663;397664;397665;397666;397667;397668;397669;397670;397671;397672 243645;243646;243647;243648;243649;243650;243651;243652;243653;243654;243655;243656;243657;243658;243659;243660 243645 16 VGVIGIGGLGHIAIK Unmodified 1402.866 0.86601971 1296 P27250 ahr Aldehyde reductase Ahr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 1 2 1 1 2 39.387 37.676 2;3 2.7466E-06 18738 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 101.53 101.53 333180000 49242000 48091000 55578000 0 0 0 37778000 25921000 26779000 0 0 665750 14068000 11153000 11915000 0 0 0 16872000 16112000 19008000 0 0 0 21421 1296 20754 397673;397674;397675;397676;397677;397678;397679;397680;397681;397682;397683;397684;397685;397686;397687;397688;397689;397690;397691;397692;397693;397694 243661;243662;243663;243664;243665;243666;243667;243668;243669;243670;243671;243672;243673 243662 13 VGVIMQDK Unmodified 888.47389 0.47388839 1583 P45955 ybgF Uncharacterized protein YbgF yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 16.796 17.624 2 0.00062514 6234 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.04 107 373170000 0 91013000 80079000 0 0 0 0 0 0 0 0 0 0 100400000 101680000 0 0 0 0 0 0 0 0 0 21422 1583 20755 397695;397696;397697;397698 243674 243674 1 VGVINGAEQDVAEVAK Unmodified 1597.8312 0.83115034 95 P04846 nlpA Lipoprotein 28 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 33.568 32.115 2 3.08E-06 15334 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 119.39 85.626 86925000 12857000 12646000 9928500 2012100 0 0 6156300 6575200 5737000 0 0 0 3042500 4783900 1938100 0 0 0 7224600 7883900 6139400 0 0 0 21423 95 20756 397699;397700;397701;397702;397703;397704;397705;397706;397707;397708;397709;397710;397711 243675;243676;243677 243675 3 VGVIVGAEQQVAEVAQK Unmodified 1723.9468 0.9468488 1321 P28635 metQ D-methionine-binding lipoprotein MetQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 37.023 35.34 2;3 7.9446E-14 17355 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 205.46 197.12 711780000 62212000 55444000 49409000 18019000 18552000 18791000 47534000 47522000 39629000 44525000 42504000 46711000 19432000 19333000 23296000 5110800 2867000 4025800 39949000 37034000 40405000 13581000 8269100 7624200 21424 1321 20757 397712;397713;397714;397715;397716;397717;397718;397719;397720;397721;397722;397723;397724;397725;397726;397727;397728;397729;397730;397731;397732;397733;397734;397735;397736;397737;397738;397739;397740;397741;397742;397743;397744;397745;397746;397747;397748;397749;397750;397751;397752;397753;397754;397755;397756;397757 243678;243679;243680;243681;243682;243683;243684;243685;243686;243687;243688;243689;243690;243691;243692;243693;243694;243695;243696;243697;243698;243699;243700;243701;243702;243703;243704;243705;243706;243707;243708;243709;243710;243711;243712;243713;243714 243689 35 VGVKNPLFLLDEIDK Unmodified 1698.9556 0.95562257 536 P0A9M0 lon Lon protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 47.674 47.73 3 6.5592E-05 17328 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 64.52 58.2 63464000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12558000 22302000 28604000 0 0 0 0 0 0 21425 536 20758 397758;397759;397760 243715;243716;243717 243716 3 VGVKNPLFLLDEIDKMSSDMR Unmodified 2406.2287 0.22870267 536 P0A9M0 lon Lon protease yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 52.19 51.383 4 7.4561E-07 19087 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 81.665 74.271 62648000 0 0 0 0 0 0 0 0 3090100 0 0 0 0 2458600 0 0 29248000 20080000 0 4629800 3141900 0 0 0 21426 536 20759 397761;397762;397763;397764;397765;397766 243718;243719 243719 2 VGVLDIPGFYVGLTDDVK Unmodified 1906.0088 0.0087803574 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.215 53.742 2 6.4209E-07 25410 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 98.531 89.243 417130000 42808000 46721000 35350000 0 0 0 21903000 24144000 26373000 0 0 0 34668000 26988000 23445000 0 0 0 44384000 42379000 47970000 0 0 0 21427 1221 20760 397767;397768;397769;397770;397771;397772;397773;397774;397775;397776;397777;397778 243720;243721 243721 0 VGVLQGTTQETFGNEHWAPK Unmodified 2198.0756 0.075631144 887 P0AEU0 hisJ Histidine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1 1 1 1 1 2 33.016 31.56 2;3 5.761E-23 14905 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 227.42 219.88 1679800000 377630000 323300000 321620000 0 0 0 75563000 67843000 68965000 0 0 0 63264000 58593000 56331000 0 0 0 78392000 90843000 97491000 0 0 0 21428 887 20761 397779;397780;397781;397782;397783;397784;397785;397786;397787;397788;397789;397790;397791;397792;397793 243722;243723;243724;243725;243726;243727;243728;243729;243730;243731;243732;243733;243734 243730 13 VGVLSNDFFVNLLDMR Unmodified 1837.9397 0.93965493 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 2 2 2 1 1 2 2 2 2 2 2 1 55.771 54.307 2;3 4.0898E-39 26771 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 253.76 236.02 2528100000 60511000 333220000 341840000 0 3608200 0 328550000 276460000 294970000 0 2992700 1837600 138810000 157540000 140860000 0 0 0 168830000 126110000 151050000 0 0 884050 21429 1086 20762 397794;397795;397796;397797;397798;397799;397800;397801;397802;397803;397804;397805;397806;397807;397808;397809;397810;397811;397812;397813;397814;397815;397816;397817;397818;397819;397820 243735;243736;243737;243738;243739;243740;243741;243742;243743;243744;243745;243746;243747;243748;243749;243750;243751;243752 243746 18 VGVNQVVGVNLFDVYR Unmodified 1776.9523 0.95226853 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 52.346 51.117 2;3 1.3307E-39 23830 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 265.61 259.64 3850800000 322450000 286290000 282450000 1778500 0 1835400 245680000 245300000 245870000 2798100 3581300 2917400 324520000 329120000 345440000 2449900 0 0 381880000 415620000 410800000 0 0 0 21430 161 20763 397821;397822;397823;397824;397825;397826;397827;397828;397829;397830;397831;397832;397833;397834;397835;397836;397837;397838;397839;397840;397841;397842;397843;397844;397845;397846;397847;397848;397849;397850;397851 243753;243754;243755;243756;243757;243758;243759;243760;243761;243762;243763;243764;243765;243766;243767;243768;243769;243770;243771;243772;243773;243774;243775;243776;243777 243776 25 VGVQNGTTHQK Unmodified 1167.5996 0.59963426 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 5.1464 6.0586 3 0.11137 1135 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 29.063 25.141 39833000 0 0 0 0 0 0 0 7821500 0 0 0 0 4898000 5154400 5434000 0 0 0 6705800 4897700 4922000 0 0 0 21431 1349 20764 397852;397853;397854;397855;397856;397857;397858;397859 243778;243779 243779 2 VGVTLLNQSVLLR Unmodified 1410.8558 0.85584895 1518 P39280 epmB L-lysine 2,3-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.168 44.678 2 0.051328 21669 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 47.228 30.39 101550000 8685100 10201000 8514100 0 0 0 13736000 7594300 8680500 0 0 0 5582800 4789800 6437100 0 0 0 9216100 8846200 9267800 0 0 0 21432 1518 20765 397860;397861;397862;397863;397864;397865;397866;397867;397868;397869;397870;397871 243780;243781;243782;243783 243783 0 VGVVGIGGLGHMGIK Unmodified 1392.7911 0.7911402 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 33.904 32.665 2 1.1204E-05 15380 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.5 111.36 321920000 111660000 98624000 111630000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21433 1762 20766 397872;397873;397874 243784;243785;243786 243786 3 VGVVQFIK Unmodified 888.54329 0.54328858 521 P0A9H5 btuR Cob(I)yrinic acid a,c-diamide adenosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 31.818 30.405 2 0.13361 14467 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.456 48.316 46065000 11980000 0 0 0 0 0 3973900 6440600 5295600 0 0 0 4242200 3734400 618890 0 0 0 3266200 0 6513200 0 0 0 21434 521 20767 397875;397876;397877;397878;397879;397880;397881;397882;397883 243787 243787 0 VGVYSSPHLVR Unmodified 1212.6615 0.66150624 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 18.011 18.687 2 0.0019739 6902 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 95.608 86.745 76219000 14986000 11102000 10883000 0 0 0 0 0 0 0 0 0 4658000 5542400 0 0 0 0 11083000 9959700 8004200 0 0 0 21435 177 20768 397884;397885;397886;397887;397888;397889;397890;397891 243788 243788 1 VGWGGSLQLVADMIK Unmodified 1572.8334 0.83339895 929 P0AFD4 nuoH NADH-quinone oxidoreductase subunit H yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.826 53.342 2 1.733E-06 26084 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.99 117.96 421690000 0 0 0 0 0 0 29841000 33899000 32170000 7852900 8000700 6194600 46540000 35285000 35052000 0 0 0 66120000 66446000 54285000 0 0 0 21436 929 20769 397892;397893;397894;397895;397896;397897;397898;397899;397900;397901;397902;397903 243789;243790;243791;243792;243793;243794;243795;243796;243797 243794 9 VGWLYSVIAPGK Unmodified 1288.718 0.71795849 1390 P32157 yiiM Protein YiiM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 48.412 47.004 2 0.0007114 22961 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 81.338 71.541 129570000 17538000 19820000 16072000 671960 813410 750770 20864000 20337000 20569000 0 0 0 0 0 0 0 0 0 0 12130000 0 0 0 0 21437 1390 20770 397904;397905;397906;397907;397908;397909;397910;397911;397912;397913;397914 243798;243799;243800;243801;243802;243803;243804 243800 7 VGWSADYAEALK Unmodified 1308.635 0.63501672 790 P0ADI7 yecD Isochorismatase family protein YecD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 36.865 35.351 2 0.00063167 17092 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 82.417 78.118 350430000 54827000 51430000 44790000 0 0 0 0 0 0 0 0 0 30678000 24339000 28423000 0 0 0 40341000 35833000 39765000 0 0 0 21438 790 20771 397915;397916;397917;397918;397919;397920;397921;397922;397923 243805;243806;243807;243808;243809;243810;243811;243812;243813 243805 9 VGWSADYAEALKQPVDAPSPAK Unmodified 2299.1485 0.14846174 790 P0ADI7 yecD Isochorismatase family protein YecD yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 37.237 35.371 3 7.0489E-07 17393 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 102.9 99.802 250940000 0 0 0 0 0 0 46836000 56035000 48160000 742850 0 0 8828600 8306400 7775800 0 0 0 22856000 27054000 24343000 0 0 0 21439 790 20772 397924;397925;397926;397927;397928;397929;397930;397931;397932;397933 243814;243815 243815 2 VGYINDQYVLNPTQDELK Unmodified 2108.0426 0.042599681 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 1 42.503 40.709 2;3 7.5783E-45 19982 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 305.84 300.36 2516000000 116000000 115030000 99618000 4120700 4009500 3363600 211530000 200920000 211720000 6054200 0 0 220930000 223790000 217180000 0 0 0 290940000 269900000 318880000 0 1991300 0 21440 107 20773 397934;397935;397936;397937;397938;397939;397940;397941;397942;397943;397944;397945;397946;397947;397948;397949;397950;397951;397952;397953;397954;397955;397956;397957;397958;397959;397960;397961;397962;397963 243816;243817;243818;243819;243820;243821;243822;243823;243824;243825;243826;243827;243828;243829;243830;243831;243832;243833;243834;243835;243836;243837 243829 22 VGYINDQYVLNPTQDELKESK Unmodified 2452.2122 0.21218421 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 35.849 34.257 3 1.7857E-10 11970 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 124.35 123.14 117970000 0 0 0 17542000 14401000 16195000 5708400 0 0 10045000 10395000 8966600 0 0 0 3356900 2999300 2843600 0 0 0 9174200 9259000 7082300 21441 107 20774 397964;397965;397966;397967;397968;397969;397970;397971;397972;397973;397974;397975;397976 243838;243839;243840;243841;243842;243843;243844;243845;243846 243845 9 VGYLVVSTDR Unmodified 1107.5924 0.59242362 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.916 26.734 2 4.0348E-05 9646 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 140.35 105.55 1176800000 0 0 0 14846000 14562000 12423000 0 0 0 44414000 43064000 40194000 135540000 118850000 129840000 18220000 10326000 10966000 138960000 151130000 158250000 48235000 44345000 42642000 21442 644 20775 397977;397978;397979;397980;397981;397982;397983;397984;397985;397986;397987;397988;397989;397990;397991;397992;397993;397994 243847;243848;243849;243850;243851;243852;243853;243854;243855;243856;243857;243858;243859;243860;243861 243851 9 VHAPSGR Unmodified 722.38237 0.38237127 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4.9686 5.8614 2 0.0023499 1091 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.85 101.29 2242500000 1720300 1421100 1074300 4336400 0 1105000 269210000 259850000 273880000 0 0 0 271760000 225470000 207240000 0 0 0 252720000 234490000 238180000 0 0 0 21443 1733 20776 397995;397996;397997;397998;397999;398000;398001;398002;398003;398004;398005;398006;398007;398008 243862;243863;243864 243863 3 VHATAIK Unmodified 738.43882 0.43882351 1359 P31119 aas Bifunctional protein Aas;2-acylglycerophosphoethanolamine acyltransferase;Acyl-[acyl-carrier-protein] synthetase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 10.129 10.778 2 0.020298 2471 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 76.847 66.54 17762000 0 0 0 0 0 0 0 0 0 0 0 0 1285800 1518200 1088700 0 2263200 1261500 4196400 3542300 2605900 0 0 0 21444 1359 20777 398009;398010;398011;398012;398013;398014;398015;398016 243865 243865 1 VHDDMFPLEEVAK Unmodified 1528.7232 0.7231798 197 P09030 xthA Exodeoxyribonuclease III yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 35.653 34.271 2;3 6.6545E-09 16805 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 167.18 154.09 1078000000 97090000 95470000 75402000 0 0 0 67222000 64784000 64272000 0 0 0 79018000 88013000 88948000 9166100 7863500 6566900 104310000 118530000 111340000 0 0 0 21445 197 20778 398017;398018;398019;398020;398021;398022;398023;398024;398025;398026;398027;398028;398029;398030;398031;398032;398033;398034;398035;398036;398037;398038;398039;398040;398041;398042;398043 243866;243867;243868;243869;243870;243871;243872;243873;243874;243875;243876;243877;243878;243879 243870 14 VHDLDGNLIFAHNLDR Unmodified 1847.9278 0.9278447 1313 P27848 yigL Pyridoxal phosphate phosphatase YigL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.403 31.063 3;4 2.0533E-06 14705 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.866 87.741 913540000 61976000 55380000 48856000 0 0 0 93447000 93300000 81350000 0 0 0 65588000 64197000 62455000 0 0 0 94905000 100950000 91136000 0 0 0 21446 1313 20779 398044;398045;398046;398047;398048;398049;398050;398051;398052;398053;398054;398055;398056;398057;398058;398059;398060;398061;398062;398063;398064;398065;398066;398067 243880;243881;243882;243883;243884;243885;243886;243887;243888;243889;243890;243891;243892;243893;243894;243895;243896 243883 17 VHDLNEDAEFDENGVEVFDEK Unmodified 2449.0557 0.055743143 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12 11 13 1 1 1 1 1 1 40.571 39.926 2;3 4.0199E-63 12539 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 344.35 342.55 2495100000 6477900 5871500 0 1658600 1090900 1305100 22033000 25355000 25634000 39464000 36794000 31969000 19922000 21326000 17716000 905390000 622860000 657510000 13395000 11457000 13137000 5585400 4643700 4467500 21447 1089 20780 398068;398069;398070;398071;398072;398073;398074;398075;398076;398077;398078;398079;398080;398081;398082;398083;398084;398085;398086;398087;398088;398089;398090;398091;398092;398093;398094;398095;398096;398097;398098;398099;398100;398101;398102;398103;398104;398105;398106;398107;398108;398109;398110;398111;398112;398113;398114;398115;398116;398117;398118;398119;398120;398121;398122;398123 243897;243898;243899;243900;243901;243902;243903;243904;243905;243906;243907;243908;243909;243910;243911;243912;243913;243914;243915;243916;243917;243918;243919;243920;243921;243922;243923;243924;243925;243926;243927;243928;243929;243930;243931;243932;243933;243934;243935;243936;243937;243938;243939;243940 243924 42 VHEELTALQGQTDPLEIIADR Unmodified 2347.202 0.20195387 1698 P64612 zapE Cell division protein ZapE yes yes 0 0 0 By MS/MS By matching 1 1 47.096 45.844 3 1.7362E-10 22455 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 99.407 84.026 185380000 138500000 0 0 0 0 0 0 0 0 0 0 0 0 46885000 0 0 0 0 0 0 0 0 0 0 21448 1698 20781 398124;398125 243941 243941 1 VHEGRPHIQDR Unmodified 1342.6854 0.68542958 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 10.252 11.082 2;3 3.6049E-05 2449 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 135.43 111.09 1226000000 329080000 288050000 194500000 0 0 0 0 0 0 0 0 0 25922000 7419800 25469000 0 0 0 131370000 115700000 108530000 0 0 0 21449 65 20782 398126;398127;398128;398129;398130;398131;398132;398133;398134;398135;398136;398137;398138;398139;398140;398141;398142 243942;243943;243944;243945;243946;243947;243948;243949;243950;243951 243949 10 VHELANWLR Unmodified 1136.6091 0.60907674 1182 P21507 srmB ATP-dependent RNA helicase SrmB yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 26.616 25.735 3 0.0075726 11689 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.423 54.757 6789900 0 3680100 3109800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21450 1182 20783 398143;398144;398145 243952;243953 243952 2 VHFQQADDDNDVAVSLVIALIVENPQQQLK Unmodified 3345.7205 0.72048427 1750 P69828 gatA Galactitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 55.508 54.042 3;4 7.3284E-54 26873 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 240.44 238.54 1046200000 68435000 62507000 62175000 0 0 0 129110000 126300000 119320000 0 0 0 69862000 84521000 86190000 0 0 0 79496000 82566000 75703000 0 0 0 21451 1750 20784 398146;398147;398148;398149;398150;398151;398152;398153;398154;398155;398156;398157;398158 243954;243955;243956;243957;243958;243959;243960;243961;243962 243955 8 VHGDIDFVMLAK Unmodified 1343.6908 0.69075746 789 P0ADI4 entB Enterobactin synthase component B;Isochorismatase;Aryl carrier protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 35.654 34.057 3 2.3363E-05 16293 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 90.685 82.774 84874000 0 4493100 0 0 0 0 4790500 3617400 4467800 0 0 0 9021400 5951300 9029000 0 0 0 12255000 15429000 15819000 0 0 0 21452 789 20785 398159;398160;398161;398162;398163;398164;398165;398166;398167;398168;398169 243963;243964;243965;243966;243967;243968;243969 243964 7 VHGGILGR Unmodified 807.47152 0.47152062 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.268 13.101 2 0.13485 3893 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 42.914 31.938 661800000 157800000 171470000 165430000 0 0 0 16064000 13334000 13684000 0 0 0 15283000 16088000 15267000 0 0 0 24955000 27648000 24790000 0 0 0 21453 1111 20786 398170;398171;398172;398173;398174;398175;398176;398177;398178;398179;398180;398181 243970 243970 1 VHGGPDR Unmodified 736.36164 0.36163582 1390 P32157 yiiM Protein YiiM yes yes 0 0 0 By MS/MS By matching 1 1 7.5507 8.3005 2 0.11142 1794 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 51.809 51.809 9307000 4313100 0 4993900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21454 1390 20787 398182;398183 243971 243971 1 VHHAYDSDR Unmodified 1098.4843 0.48427016 526 P0A9J0 rng Ribonuclease G yes yes 0 0 0 By MS/MS By matching 1 1 6.9446 7.6673 2 0.11227 1497 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 41.429 41.429 8668300 0 5062700 3605600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21455 526 20788 398184;398185 243972 243972 1 VHIINLEK Unmodified 964.57057 0.57056597 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.082 18.485 2 0.00013858 5361 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 156.4 125.9 4309000000 419090000 649630000 458450000 9936300 9820600 12650000 224190000 207230000 273090000 52092000 30660000 40273000 240830000 214640000 237670000 20904000 35972000 29180000 381470000 385900000 281910000 32557000 31124000 29728000 21456 373 20789 398186;398187;398188;398189;398190;398191;398192;398193;398194;398195;398196;398197;398198;398199;398200;398201;398202;398203;398204;398205;398206;398207;398208;398209 243973;243974;243975;243976;243977;243978;243979;243980;243981;243982;243983;243984;243985;243986;243987;243988;243989;243990;243991;243992;243993;243994;243995;243996 243973 24 VHLADGLGPDNMLSEEAMTR Unmodified 2155.0038 0.003788109 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.011 37.338 3 1.4302E-14 18127 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 140.28 121.74 321240000 38906000 31920000 37822000 0 0 0 17921000 19928000 20492000 0 0 0 25241000 22687000 20386000 0 0 0 27208000 25969000 32757000 0 0 0 21457 953 20790 398210;398211;398212;398213;398214;398215;398216;398217;398218;398219;398220;398221 243997;243998;243999;244000;244001;244002;244003;244004;244005;244006;244007 244003 11 VHLITCHNDMAK Unmodified 1437.6857 0.68568885 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 2 1 2 2 1 3 1 2 2 1 1 2 2 2 12.455 13.205 2;3 1.5763E-05 3862 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 125.75 117.82 367300000 4885200 0 0 4549800 1493100 710420 51308000 47639000 26829000 16779000 12896000 12428000 28478000 13649000 9957800 0 0 0 48075000 46692000 40936000 0 0 0 21458 656 20791 398222;398223;398224;398225;398226;398227;398228;398229;398230;398231;398232;398233;398234;398235;398236;398237;398238;398239;398240;398241;398242;398243;398244;398245;398246;398247 244008;244009;244010;244011;244012;244013;244014;244015 244012 7 VHMAHITHPLVGDPVYGGR Unmodified 2055.0472 0.047248324 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 21.052 21.392 3;4 2.7697E-10 8521 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 127.88 124.16 366000000 50913000 51112000 43436000 0 0 0 22183000 22089000 23865000 0 0 0 17686000 24896000 20271000 0 0 0 31197000 31792000 26559000 0 0 0 21459 1429 20792 398248;398249;398250;398251;398252;398253;398254;398255;398256;398257;398258;398259;398260;398261;398262;398263;398264;398265;398266;398267;398268;398269;398270;398271 244016;244017;244018;244019;244020;244021;244022;244023 244020 8 VHMEVAR Unmodified 840.42761 0.4276069 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.298 12.131 2 0.016885 3003 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 80.294 76.076 289200000 32698000 36102000 31206000 0 0 0 14245000 18196000 16305000 0 0 0 19624000 21721000 17391000 0 0 0 27091000 24033000 30590000 0 0 0 21460 1650 20793 398272;398273;398274;398275;398276;398277;398278;398279;398280;398281;398282;398283 244024;244025;244026 244024 2 VHMLALGHPILGDR Unmodified 1527.8344 0.834402 573 P0AA37 rluA Ribosomal large subunit pseudouridine synthase A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.3 27.052 4 3.3688E-05 12434 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 87.719 86.14 98377000 12071000 11247000 10536000 0 0 0 9248100 6563700 8367800 0 0 0 7032400 3548000 5495500 0 0 0 9166400 7736000 7366100 0 0 0 21461 573 20794 398284;398285;398286;398287;398288;398289;398290;398291;398292;398293;398294;398295 244027;244028;244029;244030 244028 4 VHMPCNGILR Unmodified 1195.5954 0.59541728 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 20.663 20.585 3 0.062179 6677 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 38.303 34.732 11035000 0 0 0 0 1123900 208120 0 0 0 2779400 3139200 0 0 0 0 0 0 0 0 0 0 0 0 3784300 21462 439 20795 398296;398297;398298;398299;398300 244031;244032 244032 2 VHNLAWEEDAR Unmodified 1338.6317 0.63166267 1413 P33224 aidB Putative acyl-CoA dehydrogenase AidB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 17.971 18.515 2 2.8662E-06 7015 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.85 150.74 101850000 8738200 9409900 9324200 0 0 0 20340000 23995000 26617000 0 0 0 0 0 0 0 0 0 3430800 0 0 0 0 0 21463 1413 20796 398301;398302;398303;398304;398305;398306;398307 244033;244034;244035 244034 3 VHNPAVEK Unmodified 892.47667 0.47666558 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 6.3179 7.1044 2 0.0022023 1626 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 102.46 78.941 90115000 9213500 0 4958500 0 0 0 26084000 28873000 20986000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21464 1265 20797 398308;398309;398310;398311;398312;398313 244036;244037;244038;244039;244040;244041;244042;244043;244044;244045;244046 244041 11 VHPNGIR Unmodified 791.44022 0.4402205 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 9.4382 10.101 2 0.025102 2488 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 71.995 54.228 550500000 68782000 59229000 71087000 4590400 5998000 4060700 2950900 3770800 3818200 20135000 17154000 17339000 40371000 0 29799000 12068000 0 0 56736000 57636000 49112000 12814000 0 13052000 21465 374 20798 398314;398315;398316;398317;398318;398319;398320;398321;398322;398323;398324;398325;398326;398327;398328;398329;398330;398331;398332;398333;398334 244047;244048;244049;244050;244051;244052;244053;244054 244052 8 VHQDMELYR Unmodified 1189.555 0.55499226 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 15.531 16.259 2;3 9.6568E-06 4514 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 167.24 158.38 370440000 30611000 26881000 26277000 16196000 17400000 15337000 29108000 29387000 20567000 0 0 1140500 15846000 15978000 12819000 0 0 0 18024000 20767000 16237000 19886000 16777000 21204000 21466 1587 20799 398335;398336;398337;398338;398339;398340;398341;398342;398343;398344;398345;398346;398347;398348;398349;398350;398351;398352;398353;398354;398355;398356;398357;398358;398359;398360;398361;398362;398363;398364;398365;398366;398367;398368;398369;398370;398371;398372 244055;244056;244057;244058;244059;244060;244061;244062;244063;244064;244065;244066;244067;244068;244069;244070;244071;244072;244073;244074;244075;244076;244077 244059 20 VHQGYDHR Unmodified 1010.4682 0.46822616 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 4.7403 5.7007 2 0.00093078 977 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 117.1 113.16 248360000 0 0 0 3452900 3609500 4995200 47683000 46127000 45179000 0 0 0 0 0 625210 0 0 0 2526200 0 94166000 0 0 0 21467 1210 20800 398373;398374;398375;398376;398377;398378;398379;398380;398381 244078;244079;244080;244081 244079 4 VHSAATIAGIAFANAFLGVCHSMAHK Unmodified 2680.3366 0.33663041 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 46.159 44.489 4;5 3.0232E-11 15760 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 132.36 131.31 2327800000 179730000 195390000 177350000 24544000 25954000 55328000 322250000 229040000 235200000 126540000 108050000 102740000 40150000 67840000 64201000 0 0 0 71912000 47225000 37979000 61822000 69055000 85475000 21468 548 20801 398382;398383;398384;398385;398386;398387;398388;398389;398390;398391;398392;398393;398394;398395;398396;398397;398398;398399;398400;398401;398402;398403;398404;398405;398406;398407;398408;398409;398410;398411;398412;398413;398414;398415;398416;398417;398418 244082;244083;244084;244085;244086;244087;244088;244089;244090;244091;244092;244093;244094;244095;244096;244097;244098;244099;244100;244101;244102;244103;244104;244105;244106;244107;244108;244109;244110 244099 29 VHSTYGNVDVLK Unmodified 1330.6881 0.68811492 1152 P18775 dmsA Dimethyl sulfoxide reductase DmsA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 19.18 19.554 3 0.027739 6035 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 42.425 36.239 48477000 0 1869000 0 0 0 0 7495200 5413300 8679700 3163700 0 3773600 3786900 5259200 4659600 0 0 0 4376400 0 0 0 0 0 21469 1152 20802 398419;398420;398421;398422;398423;398424;398425;398426;398427;398428 244111 244111 1 VHTAIVVQDPTMQR Unmodified 1593.8297 0.82971055 1436 P34209 ydcF Protein YdcF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 1 2 1 2 2 2 2 2 21.169 21.517 2;3 1.9958E-26 8590 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 278.83 276.1 398560000 77877000 76940000 69988000 1775500 1234900 1100700 23769000 21061000 22186000 0 0 0 11544000 13991000 12436000 0 0 0 20789000 21492000 22374000 0 0 0 21470 1436 20803 398429;398430;398431;398432;398433;398434;398435;398436;398437;398438;398439;398440;398441;398442;398443;398444;398445;398446;398447;398448;398449;398450;398451;398452;398453 244112;244113;244114;244115;244116;244117;244118;244119;244120;244121;244122;244123;244124 244120 13 VHTECCHGDLLECADDRADLAK Unmodified 2584.1105 0.1104548 9 CON__P02768-1 yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 20.668 20.223 4 0.14146 6622 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 22.233 22.233 9596200 0 0 0 0 0 0 0 0 0 3339500 3444200 2812400 0 0 0 0 0 0 0 0 0 0 0 0 + 21471 9 20804 398454;398455;398456 244125;244126 244125 2 VHTEYNNNALTLPDYFTGR Unmodified 2224.0549 0.054895702 157 P07117 putP Sodium/proline symporter yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.615 39.046 3 0.082012 19048 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 36.997 35.729 63869000 13428000 8054300 10007000 0 0 0 0 5152800 0 0 0 0 3728900 2437000 5568200 0 0 0 8454700 7038600 0 0 0 0 21472 157 20805 398457;398458;398459;398460;398461;398462;398463;398464;398465 244127 244127 0 VHTFEEEIEFVQGLNHSTGK Unmodified 2300.1073 0.1073252 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 3 2 2 2 2 40.598 38.932 3;4 2.8197E-32 19302 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 180.39 180.01 1998300000 112100000 120630000 96010000 0 0 0 236160000 203370000 194420000 0 0 0 99356000 237770000 204840000 0 0 0 158200000 186920000 148570000 0 0 0 21473 213 20806 398466;398467;398468;398469;398470;398471;398472;398473;398474;398475;398476;398477;398478;398479;398480;398481;398482;398483;398484;398485;398486;398487;398488;398489 244128;244129;244130;244131;244132;244133;244134;244135;244136;244137;244138;244139;244140;244141;244142;244143;244144;244145 244133 18 VHTSYHQAVTATGR Unmodified 1526.759 0.75898845 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 1 1 1 2 2 1 11.049 11.771 2;3 8.4189E-57 2992 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 314.78 301.27 1190800000 124220000 127410000 128120000 2397300 0 0 89140000 80700000 82749000 0 0 0 103480000 82222000 77279000 17687000 11756000 13660000 111980000 85219000 52799000 0 0 0 21474 37 20807 398490;398491;398492;398493;398494;398495;398496;398497;398498;398499;398500;398501;398502;398503;398504;398505;398506;398507;398508;398509;398510;398511;398512;398513;398514;398515;398516 244146;244147;244148;244149;244150;244151;244152;244153;244154;244155;244156;244157;244158;244159;244160;244161;244162;244163;244164;244165;244166;244167;244168;244169;244170;244171 244160 26 VHVDEYDVDVIDSQSASK Unmodified 2004.9276 0.9276295 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 29.711 28.346 2;3 4.4759E-67 13516 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 372.73 370.72 3132200000 157780000 137550000 141010000 1650400 1922800 1450700 444520000 384650000 381540000 0 2455500 0 243870000 205340000 216740000 0 0 0 269560000 263550000 278620000 0 0 0 21475 1437 20808 398517;398518;398519;398520;398521;398522;398523;398524;398525;398526;398527;398528;398529;398530;398531;398532;398533;398534;398535;398536;398537;398538;398539;398540;398541;398542;398543;398544 244172;244173;244174;244175;244176;244177;244178;244179;244180;244181;244182;244183;244184;244185;244186;244187;244188;244189;244190;244191;244192;244193;244194 244173 23 VHVHVEEGSPK Unmodified 1216.62 0.62003536 1502 P37903 uspF Universal stress protein F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 2 1 1 1 2 2 2 1 1 2 2 2 10.795 11.546 2;3 2.5971E-10 2761 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.84 214.97 3639900000 287560000 344460000 361990000 27435000 27191000 18099000 649400000 561400000 600260000 12721000 12013000 14758000 138900000 139920000 144900000 0 3050000 1911700 96275000 92938000 104740000 0 0 0 21476 1502 20809 398545;398546;398547;398548;398549;398550;398551;398552;398553;398554;398555;398556;398557;398558;398559;398560;398561;398562;398563;398564;398565;398566;398567;398568;398569;398570;398571;398572;398573;398574;398575;398576;398577;398578;398579;398580 244195;244196;244197;244198;244199;244200;244201;244202;244203;244204;244205;244206;244207;244208;244209;244210;244211;244212;244213;244214;244215;244216 244197 21 VHVHVEEGSPKDR Unmodified 1487.7481 0.74808942 1502 P37903 uspF Universal stress protein F yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 10.416 11.504 4 0.00030123 2072 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 62.042 55.313 42082000 0 0 0 13884000 15013000 13185000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21477 1502 20810 398581;398582;398583 244217 244217 1 VHVMSHALHYGTSVFEGIR Unmodified 2139.0684 0.068377697 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 28.34 27.106 4 4.4084E-07 12694 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 103.5 98.974 151410000 33862000 35050000 0 0 0 447670 9381300 9350100 0 0 0 0 7174200 8457200 7265200 0 0 0 15231000 13083000 12105000 0 0 0 21478 636 20811 398584;398585;398586;398587;398588;398589;398590;398591;398592;398593;398594 244218;244219;244220;244221 244219 4 VHVTDYTNASR Unmodified 1261.6051 0.60511357 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 1 3 2 3 1 1 1 2 2 2 1 1 3 2 2 1 2 1 12.888 13.643 2;3 8.3103E-08 4051 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 204.07 189.86 12561000000 226520000 211710000 187520000 3982200 3354400 2142200 1639400000 1613400000 1369800000 0 4343300 7059800 1300500000 1123200000 1169400000 0 5476300 0 1258300000 1147800000 1272500000 2821600 7990100 4350400 21479 239 20812 398595;398596;398597;398598;398599;398600;398601;398602;398603;398604;398605;398606;398607;398608;398609;398610;398611;398612;398613;398614;398615;398616;398617;398618;398619;398620;398621;398622;398623;398624;398625;398626;398627;398628;398629;398630;398631;398632;398633;398634;398635 244222;244223;244224;244225;244226;244227;244228;244229;244230;244231;244232;244233;244234;244235;244236;244237;244238;244239;244240;244241;244242;244243;244244;244245;244246;244247;244248;244249 244235 28 VIAAGANVVR Unmodified 968.57671 0.57671398 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.032 17.513 2 3.1839E-06 6319 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.78 118.85 4708200000 347040000 322190000 293040000 6571700 5880200 5144600 833650000 0 0 18163000 14232000 15009000 469920000 508350000 486710000 6545600 3488900 4506000 450510000 466450000 409830000 15132000 12583000 13231000 21480 1184 20813 398636;398637;398638;398639;398640;398641;398642;398643;398644;398645;398646;398647;398648;398649;398650;398651;398652;398653;398654;398655;398656;398657;398658;398659 244250;244251;244252;244253;244254;244255;244256;244257;244258;244259;244260;244261;244262;244263;244264;244265;244266;244267;244268;244269;244270;244271;244272;244273;244274;244275;244276 244255 27 VIADCGCEGR Unmodified 1135.475 0.47502738 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.929 12.535 2 7.9382E-09 3253 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 187 169.15 5530400000 345450000 341200000 282330000 8444600 10226000 9963000 787800000 684630000 729350000 25681000 25272000 28709000 425050000 362480000 343200000 1827900 2875400 2389100 374560000 348790000 377010000 5315000 4470300 3349000 21481 1045 20814 398660;398661;398662;398663;398664;398665;398666;398667;398668;398669;398670;398671;398672;398673;398674;398675;398676;398677;398678;398679;398680;398681;398682;398683 244277;244278;244279;244280;244281;244282;244283;244284;244285;244286;244287;244288;244289;244290;244291;244292;244293;244294;244295;244296 244295 20 VIADCGCEGRA Unmodified 1206.5121 0.51214116 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.465 12.93 2 3.6607E-07 3060 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 159.37 159.37 184440000 0 0 0 17755000 17687000 18746000 0 0 1814100 43940000 31287000 29363000 0 0 0 0 2989200 2825900 0 0 0 5028500 6344900 6660000 21482 1045 20815 398684;398685;398686;398687;398688;398689;398690;398691;398692;398693;398694;398695 244297;244298;244299;244300;244301;244302;244303 244297 6 VIADHIR Unmodified 822.47119 0.47118627 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.944 12.591 2 0.0015703 3224 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 127.66 92.953 1214300000 106100000 92860000 93516000 2000700 1737900 2644800 73863000 92998000 75672000 5181500 5138900 3778700 110590000 120080000 106080000 2654600 1000800 0 97858000 107170000 108040000 2816200 2485300 0 21483 59 20816 398696;398697;398698;398699;398700;398701;398702;398703;398704;398705;398706;398707;398708;398709;398710;398711;398712;398713;398714;398715;398716;398717 244304;244305;244306;244307;244308 244307 3 VIADIYPGQTQFYVIEFK Unmodified 2130.1037 0.10374338 1713 P67603 yqfB UPF0267 protein YqfB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 53.925 52.51 2;3 7.1591E-14 25987 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 150.49 136.52 523350000 87338000 64417000 72487000 0 0 0 30518000 25898000 30828000 0 0 0 29611000 36319000 33263000 0 0 0 38606000 38834000 35234000 0 0 0 21484 1713 20817 398718;398719;398720;398721;398722;398723;398724;398725;398726;398727;398728;398729;398730;398731;398732;398733;398734;398735;398736;398737;398738 244309;244310;244311;244312;244313;244314;244315;244316;244317;244318;244319;244320 244313 12 VIADYEER Unmodified 993.47673 0.47672516 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.583 16.144 2 0.00011928 5438 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 157.52 147.21 2833300000 216710000 227770000 229000000 2468800 2194500 2189900 255740000 254650000 267280000 11664000 9480800 10476000 205250000 169720000 166390000 2866000 1845000 2247400 275690000 255150000 249570000 4884600 4655000 5440800 21485 62 20818 398739;398740;398741;398742;398743;398744;398745;398746;398747;398748;398749;398750;398751;398752;398753;398754;398755;398756;398757;398758;398759;398760;398761;398762 244321;244322;244323;244324;244325;244326;244327;244328;244329;244330;244331;244332;244333;244334;244335;244336 244330 16 VIAELTR Unmodified 800.4756 0.47560295 1995 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 26.307 24.987 2 0.019405 11598 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.748 47.907 383030000 4499300 0 3693700 55322000 49495000 60686000 18742000 29873000 29821000 5440900 5678300 11496000 4091000 5125100 3131700 0 0 0 3680100 3408500 0 27927000 23880000 37039000 + 21486 1995 20819 398763;398764;398765;398766;398767;398768;398769;398770;398771;398772;398773;398774;398775;398776;398777;398778;398779;398780;398781;398782;398783;398784;398785;398786;398787;398788;398789;398790 244337;244338;244339;244340;244341;244342;244343;244344;244345 244338 9 VIAFNGR Unmodified 775.43407 0.43407249 1873 P76561 ypfH Esterase YpfH yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.614 18.129 2 0.025077 4916 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 72.021 31.1 56101000 4232500 0 0 1768400 1803200 1946800 4932600 5839800 5143900 4023800 4343000 3155900 2065700 2092600 2497800 0 0 0 4053800 3093300 3781500 0 0 1325900 21487 1873 20820 398791;398792;398793;398794;398795;398796;398797;398798;398799;398800;398801;398802;398803;398804;398805;398806;398807 244346;244347;244348 244348 3 VIAFNVNQDISSSMQTLAK Unmodified 2065.0514 0.051390229 971 P0AFX9 rseB Sigma-E factor regulatory protein RseB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 48.706 47.444 2 5.2836E-16 23127 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 157.52 150.83 54989000 4669800 6044600 5266700 0 0 0 0 0 5405900 0 0 0 4185600 4760100 4765000 0 0 0 8542800 6034400 5314500 0 0 0 21488 971 20821 398808;398809;398810;398811;398812;398813;398814;398815;398816;398817 244349 244349 1 VIAGTGSDMYSAIIGAIGALR Unmodified 2035.0772 0.077211049 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 55.621 54.215 2;3 7.7209E-43 27020 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 315.41 305.35 628650000 225950000 208390000 194320000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21489 1374 20822 398818;398819;398820;398821;398822;398823 244350;244351;244352;244353;244354;244355 244351 6 VIAIDVNDEQLK Unmodified 1355.7296 0.72964538 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 33.055 31.615 2 8.8093E-07 15040 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 152.11 149.16 384520000 83881000 69940000 69089000 0 0 0 28582000 33755000 30030000 0 0 0 5450300 5596500 4609600 0 0 0 18479000 16154000 18954000 0 0 0 21490 1541 20823 398824;398825;398826;398827;398828;398829;398830;398831;398832;398833;398834;398835 244356;244357;244358 244356 3 VIAIVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTR Unmodified 4139.1229 0.12286269 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 2 2 3 2 3 3 2 2 2 3 2 1 1 1 3 3 2 1 52.664 51.427 3;4;5 7.5209E-59 25498 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 231.47 228.26 12722000000 970550000 941660000 768120000 41833000 31268000 40618000 1893400000 1537200000 1449500000 91188000 79815000 93443000 850180000 818390000 844790000 13275000 20158000 19996000 743310000 675610000 778220000 0 19136000 0 21491 1046 20824 398836;398837;398838;398839;398840;398841;398842;398843;398844;398845;398846;398847;398848;398849;398850;398851;398852;398853;398854;398855;398856;398857;398858;398859;398860;398861;398862;398863;398864;398865;398866;398867;398868;398869;398870;398871;398872;398873;398874;398875;398876;398877;398878;398879;398880;398881 244359;244360;244361;244362;244363;244364;244365;244366;244367;244368;244369;244370;244371;244372;244373;244374;244375;244376;244377;244378;244379;244380;244381;244382;244383;244384;244385;244386;244387;244388;244389;244390;244391;244392;244393;244394;244395;244396;244397;244398;244399;244400;244401;244402 244372 44 VIALCHQAK Unmodified 1038.5644 0.56443473 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.011 12.843 2 0.00013446 3552 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.29 119.93 2227800000 113570000 99931000 113630000 0 0 0 265500000 271040000 317930000 0 0 0 176810000 199610000 205020000 0 0 0 166830000 143220000 154740000 0 0 0 21492 257 20825 398882;398883;398884;398885;398886;398887;398888;398889;398890;398891;398892;398893 244403;244404;244405;244406;244407;244408;244409;244410 244403 8 VIALQPISQK Unmodified 1095.6652 0.66519463 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 26.412 25.338 2 0.00017953 11803 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 123.16 109.44 404630000 22761000 21219000 22263000 0 0 459770 45190000 42671000 41622000 0 0 0 33810000 30826000 27523000 0 0 0 38087000 37673000 40527000 0 0 0 21493 1685 20826 398894;398895;398896;398897;398898;398899;398900;398901;398902;398903;398904;398905;398906 244411;244412;244413;244414;244415;244416;244417;244418 244411 7 VIALVNNLGATPLSELYGVYNR Unmodified 2375.2849 0.28489564 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 54.824 53.373 2;3 1.1147E-102 26410 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 352.08 345.35 1280700000 38195000 39941000 33547000 4817800 0 0 162440000 149870000 149990000 0 0 0 157780000 112000000 135180000 0 0 0 97033000 105150000 94724000 0 0 0 21494 1806 20827 398907;398908;398909;398910;398911;398912;398913;398914;398915;398916;398917;398918;398919;398920;398921;398922;398923;398924;398925;398926;398927;398928;398929;398930;398931 244419;244420;244421;244422;244423;244424;244425;244426;244427;244428;244429;244430;244431 244423 13 VIANANFTGR Unmodified 1061.5618 0.56179219 78 P03004 dnaA Chromosomal replication initiator protein DnaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 19.163 19.534 2 0.00016786 6240 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 124.23 104.87 160580000 11810000 8352500 8430100 2550000 3383600 3269800 0 8708600 9355000 13945000 14466000 12331000 6264900 5672200 5264300 0 0 0 12488000 11066000 12826000 4448400 5952400 0 21495 78 20828 398932;398933;398934;398935;398936;398937;398938;398939;398940;398941;398942;398943;398944;398945;398946;398947;398948;398949;398950;398951 244432;244433;244434;244435;244436;244437;244438;244439;244440;244441;244442;244443;244444;244445 244432 14 VIARPFIGDK Unmodified 1114.6499 0.64987892 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.088 19.494 3 0.026806 7784 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 47.894 26.43 238400000 15397000 0 14467000 3463100 2636900 3900700 24402000 25085000 24968000 3795000 3363200 3174000 15383000 16033000 12916000 0 0 0 22506000 21445000 22979000 0 2489900 0 21496 256 20829 398952;398953;398954;398955;398956;398957;398958;398959;398960;398961;398962;398963;398964;398965;398966;398967;398968;398969 244446 244446 1 VIASCFFEASTR Unmodified 1386.6602 0.66018561 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 1 2 1 1 2 2 1 37.464 35.948 2 1.3689E-06 17257 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 148.91 144.62 3350300000 1055900000 1015100000 965730000 5187600 5215900 5415400 0 3195500 0 0 0 0 38241000 34021000 22284000 0 0 0 86925000 56366000 56809000 0 0 0 21497 318 20830 398970;398971;398972;398973;398974;398975;398976;398977;398978;398979;398980;398981;398982;398983;398984;398985;398986;398987;398988;398989 244447;244448;244449;244450;244451;244452;244453;244454;244455;244456;244457;244458;244459;244460;244461;244462;244463;244464;244465;244466;244467;244468;244469 244456 19 VIASDELMTK Unmodified 1105.5689 0.56891099 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.959 22.303 2 0.00034748 9580 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 108.98 108.98 514730000 47807000 40383000 47897000 2534000 0 0 29740000 35487000 36271000 0 2753700 5056300 33187000 29540000 34946000 0 0 0 54147000 54327000 53182000 3945200 0 3530000 21498 806 20831 398990;398991;398992;398993;398994;398995;398996;398997;398998;398999;399000;399001;399002;399003;399004;399005;399006 244470;244471;244472;244473;244474;244475;244476;244477;244478;244479;244480 244473 11 VIASELGEER Unmodified 1101.5666 0.5666028 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 18.8 19.281 2 1.2911E-06 7033 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.52 150.06 12721000000 2743200000 2825000000 2270800000 5192900 4539700 4199300 975600000 866030000 941010000 1890800 1687800 2142500 315970000 295020000 276210000 0 0 0 402140000 395300000 395400000 0 0 0 21499 195 20832 399007;399008;399009;399010;399011;399012;399013;399014;399015;399016;399017;399018;399019;399020;399021;399022;399023;399024;399025;399026;399027;399028;399029;399030 244481;244482;244483;244484;244485;244486;244487;244488;244489;244490;244491;244492;244493;244494;244495;244496 244492 14 VIASTQPAQTTVYLEQPEAIDYK Unmodified 2564.301 0.30099921 1257 P25524 codA Cytosine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 40.358 38.919 3 0.0001601 18779 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 74.579 73.595 46891000 17387000 16295000 13209000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21500 1257 20833 399031;399032;399033 244497;244498;244499 244499 3 VIASTQPAQTTVYLEQPEAIDYKR Unmodified 2720.4021 0.40211024 1257 P25524 codA Cytosine deaminase yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 34.704 33.465 3 0.011189 16059 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 53.355 46.706 33140000 14411000 9588300 9140700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21501 1257 20834 399034;399035;399036 244500 244500 0 VIASVNADFAR Unmodified 1161.6142 0.6142217 1870 P76541 eutL Ethanolamine utilization protein EutL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.115 25.967 2 7.7734E-05 11851 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.72 131.05 127560000 12541000 15587000 14168000 0 0 0 11906000 11468000 15757000 0 0 0 9126100 6182000 7186400 0 0 0 9032000 7929600 6677000 0 0 0 21502 1870 20835 399037;399038;399039;399040;399041;399042;399043;399044;399045;399046;399047;399048 244501;244502;244503;244504;244505;244506;244507;244508;244509;244510 244505 10 VIAVDDQFVNAK Unmodified 1317.6929 0.69286595 71 P02924 araF L-arabinose-binding periplasmic protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 30.443 29.129 2 0.00017596 13461 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.692 80.485 444630000 138420000 159860000 137740000 0 0 0 0 0 4858600 0 0 0 0 0 0 0 0 0 3751600 0 0 0 0 0 21503 71 20836 399049;399050;399051;399052;399053 244511 244511 0 VIAVGTTSVR Unmodified 1001.5869 0.58694431 341 P0A7F9 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.067 19.405 2 8.0822E-07 6798 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 171.73 158.74 614080000 34877000 29102000 30104000 0 0 0 36612000 47121000 36723000 19625000 15295000 18126000 35027000 33636000 26474000 0 0 0 62081000 57261000 56557000 22809000 26282000 26371000 21504 341 20837 399054;399055;399056;399057;399058;399059;399060;399061;399062;399063;399064;399065;399066;399067;399068;399069;399070;399071 244512;244513;244514;244515;244516;244517;244518;244519;244520;244521;244522;244523 244523 12 VIAYPTEAVFGVGCDPDSETAVMR Unmodified 2583.1985 0.19852475 1578 P45748 tsaC Threonylcarbamoyl-AMP synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 1 2 2 1 50.588 49.234 2;3 1.9398E-15 23866 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 203.04 203.04 342930000 32552000 27413000 32033000 0 0 0 5455200 5706800 16713000 0 0 0 33552000 29893000 32376000 0 0 0 34282000 44005000 45903000 0 3042100 0 21505 1578 20838 399072;399073;399074;399075;399076;399077;399078;399079;399080;399081;399082;399083;399084;399085;399086;399087;399088;399089;399090;399091;399092;399093 244524;244525;244526;244527;244528;244529;244530;244531;244532;244533;244534 244528 11 VICFSPDHSK Unmodified 1188.5597 0.55974328 203 P09148 galT Galactose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.92 16.736 3 0.0013246 5792 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 76.143 74.993 148880000 15436000 12906000 13190000 0 0 0 20706000 23163000 18040000 0 0 0 6663600 6950600 5960300 0 0 0 7231500 10044000 8589000 0 0 0 21506 203 20839 399094;399095;399096;399097;399098;399099;399100;399101;399102;399103;399104;399105 244535;244536;244537;244538;244539;244540 244539 5 VICQGFTGSQGTFHSEQAIAYGTK Unmodified 2586.2173 0.21728636 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 4 4 1 1 3 3 3 1 1 1 4 3 3 4 4 4 1 1 30.033 28.636 2;3;4 1.1331E-83 13237 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 361.2 350.26 6684100000 756200000 798200000 635140000 0 3069600 3606900 299820000 290860000 290060000 2706600 1468100 2949900 380080000 365770000 335430000 0 0 0 846460000 834890000 833760000 0 1861000 1732400 21507 1013 20840 399106;399107;399108;399109;399110;399111;399112;399113;399114;399115;399116;399117;399118;399119;399120;399121;399122;399123;399124;399125;399126;399127;399128;399129;399130;399131;399132;399133;399134;399135;399136;399137;399138;399139;399140;399141;399142;399143;399144;399145;399146;399147;399148;399149;399150;399151;399152;399153;399154;399155 244541;244542;244543;244544;244545;244546;244547;244548;244549;244550;244551;244552;244553;244554;244555;244556;244557;244558;244559;244560;244561;244562;244563;244564;244565;244566;244567;244568;244569;244570;244571;244572;244573;244574;244575;244576;244577 244561 37 VICSAEPK Unmodified 902.45315 0.45315295 363 P0A7Q6 rpmJ 50S ribosomal protein L36 yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 11.652 12.224 2 0.0019937 3222 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 104.21 93.14 4362700000 467150000 409920000 440230000 34416000 0 0 216960000 203440000 195620000 43454000 34673000 39155000 276730000 270320000 261180000 41938000 36179000 40882000 397870000 431790000 381250000 47157000 50540000 41853000 21508 363 20841 399156;399157;399158;399159;399160;399161;399162;399163;399164;399165;399166;399167;399168;399169;399170;399171;399172;399173;399174;399175;399176;399177;399178 244578;244579;244580;244581;244582;244583;244584;244585 244581 8 VIDAVIVGPK Unmodified 1009.6172 0.61718181 1768 P75767 ybhK Putative gluconeogenesis factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.785 27.537 2 0.0034054 12602 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.54 96.635 104170000 16471000 15977000 12560000 0 0 0 6370400 6436600 5002000 0 0 0 5795400 6183600 4983900 0 0 0 7943900 7715800 8728200 0 0 0 21509 1768 20842 399179;399180;399181;399182;399183;399184;399185;399186;399187;399188;399189;399190 244586;244587;244588;244589 244588 0 VIDFSGNYEDYLR Unmodified 1589.7362 0.73618733 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 45.821 44.353 2 2.5562E-12 20683 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 224.64 209.96 822170000 61943000 61957000 53586000 0 0 2225200 52220000 52187000 55289000 0 0 0 86874000 79256000 71384000 0 0 0 80251000 82972000 82028000 0 0 0 21510 558 20843 399191;399192;399193;399194;399195;399196;399197;399198;399199;399200;399201;399202;399203 244590;244591;244592;244593;244594 244594 5 VIDGADGAR Unmodified 872.43519 0.4351947 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 2 2 2 11.395 12.097 2 4.5389E-06 2994 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 174.27 127.92 27065000000 872200000 731700000 667120000 3721900000 4039700000 3183000000 674680000 607040000 693470000 0 0 0 429390000 352680000 351900000 82678000 0 99343000 573190000 562020000 539020000 2918200000 2920600000 3045200000 21511 133 20844 399204;399205;399206;399207;399208;399209;399210;399211;399212;399213;399214;399215;399216;399217;399218;399219;399220;399221;399222;399223;399224;399225;399226;399227;399228;399229 244595;244596;244597;244598;244599;244600;244601;244602;244603;244604;244605;244606;244607;244608;244609;244610;244611;244612;244613 244612 18 VIDGQINLR Unmodified 1026.5822 0.58219329 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 24.544 23.64 2 3.4572E-11 10496 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 208.59 166.94 8628900000 2020000000 1828500000 1707500000 5435700 4992200 6087000 676140000 628710000 576700000 0 0 0 173730000 170310000 153980000 0 0 0 219100000 241620000 216030000 0 0 0 21512 195 20845 399230;399231;399232;399233;399234;399235;399236;399237;399238;399239;399240;399241;399242;399243;399244;399245;399246;399247 244614;244615;244616;244617;244618;244619;244620;244621;244622;244623;244624;244625;244626;244627;244628;244629;244630;244631 244614 17 VIDHYENPR Unmodified 1141.5516 0.55162144 721 P0ACD4 iscU Iron-sulfur cluster assembly scaffold protein IscU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 2 1 2 1 11.755 12.487 2;3 1.335E-12 3190 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 186.3 165.78 5795600000 509580000 519790000 540920000 8199700 8886800 8115100 492370000 467720000 330270000 10823000 8995700 8223000 446020000 382830000 234650000 1314400 0 0 606620000 616740000 569770000 8139400 8530800 7124600 21513 721 20846 399248;399249;399250;399251;399252;399253;399254;399255;399256;399257;399258;399259;399260;399261;399262;399263;399264;399265;399266;399267;399268;399269;399270;399271;399272;399273;399274;399275;399276;399277;399278;399279;399280;399281;399282;399283;399284;399285 244632;244633;244634;244635;244636;244637;244638;244639;244640;244641;244642;244643;244644;244645;244646;244647;244648;244649;244650;244651;244652;244653;244654;244655;244656;244657;244658;244659;244660 244660 28 VIDIDQSPIGR Unmodified 1211.651 0.65100113 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.015 29.621 2 4.1921E-08 14035 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 177.36 159.93 575530000 46612000 51727000 53897000 2069500 1598700 1772400 35028000 33428000 32566000 6424700 4920100 6568000 28180000 29967000 30220000 46156000 27241000 29230000 33899000 34846000 28786000 3517400 3869600 3006400 21514 222 20847 399286;399287;399288;399289;399290;399291;399292;399293;399294;399295;399296;399297;399298;399299;399300;399301;399302;399303;399304;399305;399306;399307;399308;399309 244661;244662;244663;244664;244665;244666;244667;244668;244669;244670;244671;244672;244673;244674;244675;244676;244677 244668 17 VIDIPFPLK Unmodified 1040.627 0.62701821 1504 P38051 menF Isochorismate synthase MenF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.085 47.745 2 0.00090178 23803 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.299 88.162 131230000 12480000 15453000 11113000 0 0 0 12131000 10600000 11782000 0 0 0 8574000 9387500 7752100 0 0 0 8683700 11367000 11905000 0 0 0 21515 1504 20848 399310;399311;399312;399313;399314;399315;399316;399317;399318;399319;399320;399321 244678;244679;244680;244681;244682;244683;244684 244678 7 VIDIWAAANDR Unmodified 1242.6357 0.63568542 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 3 2 2 4 8 8 2 2 1 12 11 12 3 4 2 7 7 9 42.374 41.097 2;3 8.6332E-15 15239 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 183.67 176.52 48020000000 309890000 290690000 269020000 20625000 25361000 21162000 269990000 261550000 267660000 3459000000 3189200000 108170000 275930000 261170000 259220000 10296000000 8005800000 8772600000 370760000 350170000 404410000 3357700000 3447400000 3726700000 21516 458 20849 399322;399323;399324;399325;399326;399327;399328;399329;399330;399331;399332;399333;399334;399335;399336;399337;399338;399339;399340;399341;399342;399343;399344;399345;399346;399347;399348;399349;399350;399351;399352;399353;399354;399355;399356;399357;399358;399359;399360;399361;399362;399363;399364;399365;399366;399367;399368;399369;399370;399371;399372;399373;399374;399375;399376;399377;399378;399379;399380;399381;399382;399383;399384;399385;399386;399387;399388;399389;399390;399391;399392;399393;399394;399395;399396;399397;399398;399399;399400;399401;399402;399403;399404;399405;399406;399407;399408;399409;399410;399411;399412;399413;399414;399415;399416;399417;399418;399419;399420;399421;399422;399423;399424;399425;399426;399427;399428;399429;399430;399431;399432;399433 244685;244686;244687;244688;244689;244690;244691;244692;244693;244694;244695;244696;244697;244698;244699;244700;244701;244702;244703;244704;244705;244706;244707;244708;244709;244710;244711;244712;244713;244714;244715;244716;244717;244718;244719;244720;244721;244722;244723;244724;244725;244726;244727;244728;244729;244730;244731;244732;244733;244734;244735;244736;244737;244738;244739;244740;244741;244742;244743;244744;244745;244746;244747;244748;244749;244750;244751;244752;244753;244754;244755;244756;244757;244758;244759;244760;244761;244762;244763 244726 63 VIDLLIK Unmodified 812.53714 0.53714057 259 P0A6L4 nanA N-acetylneuraminate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.008 35.202 2 0.0053367 17000 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 100.07 73.004 433700000 54339000 59121000 50046000 0 463900 0 20996000 25856000 21974000 1113400 1042200 0 38868000 26026000 29516000 0 0 0 35893000 34139000 34310000 0 0 0 21517 259 20850 399434;399435;399436;399437;399438;399439;399440;399441;399442;399443;399444;399445;399446;399447;399448 244764;244765;244766;244767;244768;244769;244770;244771;244772;244773;244774;244775 244767 12 VIDLMCPFAK Unmodified 1192.5984 0.59843698 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.609 44.187 2 9.3701E-05 17442 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 131.06 108.98 4035600000 0 71153000 66642000 45581000 48573000 48280000 241360000 234290000 259260000 215260000 230560000 245560000 257940000 258320000 246340000 40185000 22821000 42868000 299480000 320480000 297860000 171070000 188130000 183590000 21518 646 20851 399449;399450;399451;399452;399453;399454;399455;399456;399457;399458;399459;399460;399461;399462;399463;399464;399465;399466;399467;399468;399469;399470;399471 244776;244777;244778;244779;244780;244781;244782;244783;244784;244785;244786;244787;244788;244789;244790;244791;244792;244793;244794;244795;244796;244797;244798 244786 20 VIDLMCPFAK Oxidation (M) 1208.5934 0.5933516 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 2 1 2 1 1 1 1 2 2 2 37.758 35.846 2 0.0015565 14696 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 86.011 80.279 50896000 0 1511100 0 1489500 404140 763150 0 3518900 8192100 6767700 2785400 3255800 0 0 1879600 0 0 349330 3898700 0 3724600 3560400 4054600 4741400 21519 646 20851 399472;399473;399474;399475;399476;399477;399478;399479;399480;399481;399482;399483;399484;399485;399486;399487;399488;399489;399490;399491;399492;399493;399494 244799;244800;244801;244802;244803;244804;244805;244806;244807 244799 355 5 VIDQGADDTTNAVSIR Unmodified 1673.822 0.82204222 1128 P16688 phnJ Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 23.868 22.999 2 1.5855E-18 10058 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 192.63 160.64 57667000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19876000 19270000 18521000 0 0 0 21520 1128 20852 399495;399496;399497 244808;244809;244810 244810 3 VIDQGTGETMGDMTK Unmodified 1581.7015 0.70145808 1560 P42641 obgE GTPase ObgE/CgtA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 21.719 21.807 2 1.6746E-11 8848 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 199.43 195.9 92685000 16588000 13545000 11673000 0 0 0 0 5195600 5289600 0 0 0 6934400 5398300 5999400 0 0 0 7251100 5989900 8821400 0 0 0 21521 1560 20853 399498;399499;399500;399501;399502;399503;399504;399505;399506;399507;399508 244811;244812;244813;244814;244815 244813 5 VIDRDQAGSMELK Unmodified 1460.7293 0.72932781 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 2 2 2 1 1 2 1 2 1 1 1 2 2 1 1 16.377 17.041 2;3 9.5601E-09 5621 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 186.58 151.14 888600000 93593000 84682000 89727000 7306000 5039200 5542600 77831000 109350000 100910000 0 0 3258800 20786000 77411000 17169000 3716400 2596400 2839200 47689000 30007000 101420000 0 4697100 3024900 21522 1169 20854 399509;399510;399511;399512;399513;399514;399515;399516;399517;399518;399519;399520;399521;399522;399523;399524;399525;399526;399527;399528;399529;399530;399531;399532;399533;399534;399535;399536;399537;399538;399539;399540;399541 244816;244817;244818;244819;244820;244821;244822;244823;244824;244825;244826;244827;244828;244829;244830;244831;244832;244833;244834;244835;244836;244837;244838;244839;244840 244838 22 VIDTCPSGALK Unmodified 1159.5907 0.59070906 915 P0AF59 yjdI Uncharacterized protein YjdI yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.589 19.128 2 4.1046E-05 6873 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 131.11 122.88 417710000 34745000 29532000 26291000 0 0 0 66755000 70837000 78604000 0 692130 0 24835000 19843000 20638000 0 0 0 15049000 15745000 14147000 0 0 0 21523 915 20855 399542;399543;399544;399545;399546;399547;399548;399549;399550;399551;399552;399553;399554 244841;244842 244842 2 VIDTTAAGDSFSAGYLAVR Unmodified 1912.9531 0.95305639 1481 P37647 kdgK 2-dehydro-3-deoxygluconokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.528 40.83 2 4.6089E-45 19280 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 248.77 235.09 276470000 23430000 17496000 18858000 0 0 0 31577000 25819000 26752000 0 0 0 21925000 22017000 19701000 0 0 0 24112000 24185000 20597000 0 0 0 21524 1481 20856 399555;399556;399557;399558;399559;399560;399561;399562;399563;399564;399565;399566 244843;244844;244845;244846;244847;244848;244849;244850;244851;244852;244853;244854 244852 12 VIEAAWGAPK Unmodified 1040.5655 0.56548059 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 25.836 24.708 2 0.002175 11090 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 80.438 77.736 1095700000 0 0 0 0 0 0 134430000 122740000 132100000 0 0 0 146190000 163630000 137260000 0 0 0 85909000 86971000 86481000 0 0 0 21525 1947 20857 399567;399568;399569;399570;399571;399572;399573;399574;399575 244855;244856;244857;244858;244859;244860 244856 6 VIEAESLDLR Unmodified 1143.6136 0.61355299 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.32 28.767 2 0.00019061 13479 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.13 116.35 333550000 45773000 46832000 44173000 0 1061100 0 0 22404000 17002000 6303700 6378800 6779100 25752000 25559000 22558000 0 0 0 19549000 21599000 18586000 1331400 1911500 0 21526 297 20858 399576;399577;399578;399579;399580;399581;399582;399583;399584;399585;399586;399587;399588;399589;399590;399591;399592 244861;244862;244863;244864;244865;244866;244867;244868;244869;244870;244871;244872;244873 244868 11 VIEDISSTDSQAAHNLALSIDER Unmodified 2483.214 0.21397512 772 P0AD68 ftsI Peptidoglycan synthase FtsI yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 38.469 36.536 3 0.15653 17734 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 8.1845 4.3807 69951000 0 0 3885000 0 0 672000 0 8841700 6885300 0 3308800 2322800 0 0 0 0 0 0 10998000 16179000 14541000 2317800 0 0 21527 772 20859 399593;399594;399595;399596;399597;399598;399599;399600;399601;399602 244874;244875;244876 244874 3 VIEESLQALQER Unmodified 1413.7464 0.74635808 1953 Q46808 yqeB Uncharacterized protein YqeB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 32.097 30.736 2 0.0018384 11402 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 66.595 28.028 30764000 4094200 3837400 3669500 0 0 0 0 0 0 0 0 0 2301700 2772500 1001300 0 0 0 2894400 0 2910400 2132100 2449500 2701100 21528 1953 20860 399603;399604;399605;399606;399607;399608;399609;399610;399611;399612;399613 244877;244878 244878 1 VIEFNCR Unmodified 936.44874 0.44873627 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 19.379 19.923 2 0.00023253 7550 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 163.41 157.18 338010000 87880000 84988000 76323000 0 0 0 0 4920000 0 0 0 0 8897400 11543000 10881000 0 0 0 18049000 18025000 16500000 0 0 0 21529 1112 20861 399614;399615;399616;399617;399618;399619;399620;399621;399622;399623 244879;244880;244881;244882 244880 4 VIEFSDDSIEAR Unmodified 1379.6569 0.65687437 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.925 31.457 2 5.5008E-12 14772 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 194.67 183.86 3571800000 343250000 267020000 245770000 36967000 33064000 31480000 234500000 235610000 233540000 46589000 43663000 45349000 268260000 233430000 215030000 20490000 12850000 13466000 293090000 313540000 304910000 37820000 31848000 30250000 21530 503 20862 399624;399625;399626;399627;399628;399629;399630;399631;399632;399633;399634;399635;399636;399637;399638;399639;399640;399641;399642;399643;399644;399645;399646;399647;399648;399649 244883;244884;244885;244886;244887;244888;244889;244890;244891;244892;244893;244894;244895;244896;244897;244898;244899;244900;244901;244902;244903;244904;244905;244906;244907 244898 25 VIEGDKNVNMMEVAIDEACVR Unmodified 2391.1233 0.12325132 531 P0A9K7 phoU Phosphate-specific transport system accessory protein PhoU yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 3 1 1 1 1 1 1 1 1 1 2 2 1 42.099 40.31 3;4 7.6847E-28 19752 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 149.44 148.03 826860000 9729800 9035300 7493800 0 0 0 56065000 52953000 44995000 46156000 47407000 42129000 42488000 43334000 38827000 8279900 5962800 7615100 85943000 91108000 93345000 31123000 32511000 30362000 21531 531 20863 399650;399651;399652;399653;399654;399655;399656;399657;399658;399659;399660;399661;399662;399663;399664;399665;399666;399667;399668;399669;399670;399671;399672;399673;399674;399675;399676 244908;244909;244910;244911;244912;244913;244914;244915;244916;244917;244918;244919;244920;244921;244922;244923;244924;244925;244926;244927;244928 244923 21 VIEIAVK Unmodified 770.49019 0.49019038 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 22.675 22.076 1;2 0.013775 9189 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.63 34.718 6176400000 733910000 726930000 689080000 62099000 55556000 60046000 307730000 321720000 237170000 65226000 68956000 65933000 343130000 315820000 309930000 27982000 35130000 35985000 502200000 484560000 535410000 68233000 63829000 59868000 21532 569 20864 399677;399678;399679;399680;399681;399682;399683;399684;399685;399686;399687;399688;399689;399690;399691;399692;399693;399694;399695;399696;399697;399698;399699;399700;399701;399702;399703;399704;399705;399706;399707;399708;399709;399710;399711;399712;399713;399714;399715;399716;399717;399718;399719;399720;399721;399722 244929;244930;244931;244932;244933 244932 0 VIELQGIAGTSAAR Unmodified 1384.7674 0.76742787 72 P02925 rbsB D-ribose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 4 3 1 2 1 2 3 2 1 2 2 3 3 2 4 1 1 32.271 30.859 2;3 5.5061E-08 14420 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.58 136.74 8193800000 805760000 783300000 690840000 1859600 2414500 2674500 682690000 648920000 632660000 0 0 1629600 718760000 648060000 640720000 0 0 0 662770000 627300000 640690000 1079700 1662300 0 21533 72 20865 399723;399724;399725;399726;399727;399728;399729;399730;399731;399732;399733;399734;399735;399736;399737;399738;399739;399740;399741;399742;399743;399744;399745;399746;399747;399748;399749;399750;399751;399752;399753;399754;399755;399756;399757;399758;399759;399760;399761 244934;244935;244936;244937;244938;244939;244940;244941;244942;244943;244944;244945;244946;244947;244948;244949;244950;244951;244952;244953;244954;244955;244956;244957;244958;244959;244960;244961;244962;244963;244964;244965;244966;244967;244968;244969;244970;244971 244948 35 VIELTKK Unmodified 829.5273 0.52730417 236 P0A6E6 atpC ATP synthase epsilon chain yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.316 12.713 2 0.034959 2957 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 69.176 39.334 81902000 0 0 0 5481900 3172700 2972300 0 0 0 14301000 11598000 10991000 0 0 0 3960900 1221400 1446700 0 0 0 8411100 9146800 9198600 21534 236 20866 399762;399763;399764;399765;399766;399767;399768;399769;399770;399771;399772;399773 244972;244973 244973 2 VIEPVKR Unmodified 839.52289 0.52288749 397 P0A853 tnaA Tryptophanase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.337 11.944 2 0.0015944 2963 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 132.94 99.203 9221000000 1837700000 1613800000 1843000000 16500000 16079000 11882000 684940000 656680000 653520000 6226100 6251900 4680700 332620000 354240000 296860000 7936200 1151100 3019700 357960000 235330000 259700000 6440500 5850400 8574400 21535 397 20867 399774;399775;399776;399777;399778;399779;399780;399781;399782;399783;399784;399785;399786;399787;399788;399789;399790;399791;399792;399793;399794;399795;399796;399797 244974;244975;244976;244977;244978;244979;244980;244981;244982;244983;244984;244985 244976 12 VIEQAIK Unmodified 799.48035 0.48035398 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.694 14.209 2 0.025147 4418 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 71.949 22.359 419630000 15518000 0 0 0 0 0 47507000 37580000 46261000 10117000 8826000 8225500 35460000 40291000 37023000 0 0 1060800 0 0 47472000 31932000 28159000 24202000 21536 1067 20868 399798;399799;399800;399801;399802;399803;399804;399805;399806;399807;399808;399809;399810;399811;399812 244986;244987;244988 244986 3 VIEQAIKDGIPLSVIEAAQQSPVYK Unmodified 2695.4796 0.47963228 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 49.677 48.239 3 1.6996E-15 19089 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 147.39 144.91 190650000 0 0 0 4024400 3160500 2445800 0 0 0 12240000 11347000 13391000 0 0 0 0 0 0 0 0 0 46327000 48949000 48766000 21537 1067 20869 399813;399814;399815;399816;399817;399818;399819;399820;399821 244989;244990 244990 2 VIEQTVR Unmodified 843.48142 0.48141661 547 P0A9Q5 accD Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 12.086 12.711 2 0.00082076 3479 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.97 40.689 2601300000 201790000 164520000 157820000 10005000 9194400 9613100 202740000 201990000 209360000 37912000 29236000 28316000 182980000 151640000 155540000 11260000 8830300 9693700 250450000 229270000 228210000 37329000 37701000 35917000 21538 547 20870 399822;399823;399824;399825;399826;399827;399828;399829;399830;399831;399832;399833;399834;399835;399836;399837;399838;399839;399840;399841;399842;399843;399844;399845;399846;399847 244991;244992;244993;244994;244995;244996;244997;244998;244999;245000;245001;245002;245003;245004;245005;245006;245007;245008;245009;245010 244994 20 VIESLIHSGEPLGLEAGSK Unmodified 1935.0313 0.031306714 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1 2 2 2 1 1 1 2 1 1 2 2 2 1 1 1 36.166 34.436 2;3 3.0321E-45 16885 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 303.3 291.69 1364600000 122480000 130600000 98394000 1742100 2150500 2144300 95761000 96046000 101350000 4095000 4189200 3508800 125670000 109290000 101580000 0 0 0 111590000 125050000 119980000 2643700 2920800 3392500 21539 1172 20871 399848;399849;399850;399851;399852;399853;399854;399855;399856;399857;399858;399859;399860;399861;399862;399863;399864;399865;399866;399867;399868;399869;399870;399871;399872;399873;399874;399875;399876;399877 245011;245012;245013;245014;245015;245016;245017;245018;245019;245020;245021;245022;245023;245024;245025;245026;245027;245028;245029;245030;245031 245017 21 VIETFGASEGGNK Unmodified 1307.6357 0.635745 777 P0ADA3 nlpD Murein hydrolase activator NlpD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.415 19.763 2 8.2048E-09 7147 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 196.27 174.03 555900000 58989000 49936000 48274000 1173400 1132600 1215500 37058000 32693000 44886000 4235300 3381600 3901600 34864000 34108000 30612000 1261900 0 0 53856000 59990000 51647000 0 1421800 1260800 21540 777 20872 399878;399879;399880;399881;399882;399883;399884;399885;399886;399887;399888;399889;399890;399891;399892;399893;399894;399895;399896;399897;399898 245032;245033;245034;245035;245036;245037;245038 245038 7 VIETMYETGK Unmodified 1169.5638 0.56382561 1117;1343 P16095;P30744 sdaA;sdaB L-serine dehydratase 1;L-serine dehydratase 2 no no 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.399 20.567 2 0.0002128 8184 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 135.79 123.26 1486400000 85305000 98589000 88709000 0 0 0 123880000 125640000 128670000 3944500 2657900 2001100 126790000 121670000 99188000 878750 0 1034100 163510000 151240000 155230000 2624000 2220300 2660100 21541 1117;1343 20873 399899;399900;399901;399902;399903;399904;399905;399906;399907;399908;399909;399910;399911;399912;399913;399914;399915;399916;399917;399918 245039;245040;245041;245042;245043;245044;245045;245046 245040 8 VIETMYETGKDMNAK Unmodified 1728.8063 0.8062575 1117;1343 P16095;P30744 sdaA;sdaB L-serine dehydratase 1;L-serine dehydratase 2 no no 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 20.274 20.26 3 0.00020837 6035 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 68.513 56.721 31430000 0 0 0 2197000 2172200 2666400 0 0 0 3649500 3573000 3732000 0 0 0 2299000 2569000 2805100 0 0 0 3230200 0 2536200 21542 1117;1343 20874 399919;399920;399921;399922;399923;399924;399925;399926;399927;399928;399929 245047;245048;245049 245047 3 VIFDAMHALEAK Unmodified 1343.6908 0.69075746 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 1 2 2 2 2 2 2 37.436 35.659 2;3 3.3576E-11 17160 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.46 122.88 1070900000 43742000 42746000 38527000 0 0 0 92188000 112110000 114310000 0 2201200 2336300 143520000 96220000 117120000 0 0 0 86862000 86406000 92592000 0 0 0 21543 1468 20875 399930;399931;399932;399933;399934;399935;399936;399937;399938;399939;399940;399941;399942;399943;399944;399945;399946;399947;399948;399949;399950;399951;399952;399953 245050;245051;245052;245053;245054;245055;245056;245057;245058;245059;245060;245061;245062;245063;245064;245065;245066;245067;245068;245069 245059 20 VIFDNNYRPR Unmodified 1292.6626 0.66256887 1481 P37647 kdgK 2-dehydro-3-deoxygluconokinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 20.301 20.7 2;3 1.7516E-08 7975 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 182.53 180.13 988940000 89681000 96292000 94559000 0 0 0 84318000 89943000 91243000 0 0 0 66036000 59188000 52812000 0 0 0 93718000 86885000 84267000 0 0 0 21544 1481 20876 399954;399955;399956;399957;399958;399959;399960;399961;399962;399963;399964;399965;399966;399967;399968;399969;399970;399971;399972;399973;399974;399975;399976;399977 245070;245071;245072;245073;245074;245075;245076;245077;245078;245079;245080;245081;245082 245078 5 VIFDVAHNPHAAEYLTGR Unmodified 2009.0119 0.011908675 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 1 2 1 1 1 2 2 2 31.639 30.217 3;4 6.4383E-05 14168 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 76.061 74.635 689560000 57009000 46083000 52084000 859460 1169600 903920 41569000 24656000 47687000 0 0 0 28530000 31344000 31281000 0 0 0 117400000 102970000 106010000 0 0 0 21545 177 20877 399978;399979;399980;399981;399982;399983;399984;399985;399986;399987;399988;399989;399990;399991;399992;399993;399994;399995;399996;399997 245083;245084;245085;245086;245087;245088;245089;245090;245091 245089 9 VIFEIRDNK Unmodified 1132.6241 0.6240581 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 21.15 21.046 3 0.00032815 6172 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 87.639 78.125 45583000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8896200 11524000 13260000 0 0 0 0 6129000 5773500 21546 463 20878 399998;399999;400000;400001;400002 245092;245093;245094;245095;245096 245094 5 VIFETQSTHK Unmodified 1188.6139 0.61388734 1602 P52095 ldcC Lysine decarboxylase, constitutive yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 13.928 14.472 2 4.5388E-05 4451 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 150.05 146.13 20896000 4976900 5622100 6435600 0 0 0 0 0 0 768050 685800 0 0 0 0 0 0 0 0 2407900 0 0 0 0 21547 1602 20879 400003;400004;400005;400006;400007;400008;400009 245097;245098;245099 245099 3 VIFGATVTVLNLDSDEEQTYR Unmodified 2369.1751 0.17507042 288 P0A6W5 greA Transcription elongation factor GreA yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 3 3 3 3 3 3 2 52.492 51.22 2;3 2.9465E-43 25312 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 292.22 285.34 319810000 18170000 10086000 0 0 0 0 23043000 18561000 26888000 0 0 0 37434000 32516000 39677000 0 0 0 43088000 42064000 28281000 0 0 0 21548 288 20880 400010;400011;400012;400013;400014;400015;400016;400017;400018;400019;400020;400021;400022;400023;400024;400025;400026;400027;400028;400029;400030;400031;400032;400033;400034;400035;400036;400037;400038 245100;245101;245102;245103;245104;245105;245106;245107;245108 245100 7 VIFLTADAFGVLPPVSR Unmodified 1801.0138 0.013806156 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 54.938 53.47 2;3 6.7927E-19 26283 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 240.6 235.12 4227300000 564000000 484620000 541350000 0 1512700 0 305110000 290300000 266910000 0 0 0 287820000 276730000 291930000 0 0 0 318410000 303290000 295340000 0 0 0 21549 1195 20881 400039;400040;400041;400042;400043;400044;400045;400046;400047;400048;400049;400050;400051;400052;400053;400054;400055;400056;400057;400058;400059;400060;400061;400062;400063 245109;245110;245111;245112;245113;245114;245115;245116;245117;245118;245119;245120;245121;245122;245123;245124;245125;245126;245127 245114 19 VIGAGQVYGLSAR Unmodified 1289.7092 0.70918471 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.999 28.504 2 3.9045E-07 9319 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 118.4 91.288 868100000 75246000 77358000 76924000 3986200 2758700 3810200 62818000 69913000 60262000 19050000 17682000 18885000 39791000 43301000 37300000 0 3487500 0 68073000 63443000 65905000 19600000 19307000 19203000 21550 1408 20882 400064;400065;400066;400067;400068;400069;400070;400071;400072;400073;400074;400075;400076;400077;400078;400079;400080;400081;400082;400083;400084;400085;400086 245128;245129;245130;245131;245132;245133;245134;245135;245136;245137;245138;245139;245140;245141;245142;245143;245144 245129 16 VIGCLLEK Unmodified 930.52084 0.52083858 1331 P29217 yceH UPF0502 protein YceH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.448 24.359 2 0.028752 10872 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 64.265 54.917 808100000 81697000 79648000 78800000 0 0 0 75252000 75295000 68512000 0 0 0 63052000 63457000 57333000 0 0 0 59220000 54690000 51143000 0 0 0 21551 1331 20883 400087;400088;400089;400090;400091;400092;400093;400094;400095;400096;400097;400098 245145;245146;245147;245148;245149 245145 5 VIGFGGR Unmodified 704.39696 0.3969587 675 P0ABS5 dnaG DNA primase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.993 20.441 2 0.012164 7947 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 85.061 38.295 90251000 5317900 8323400 6067600 0 0 0 8199800 7111500 8751600 0 0 0 6137500 7135300 5710500 0 0 0 7484100 10195000 9816700 0 0 0 21552 675 20884 400099;400100;400101;400102;400103;400104;400105;400106;400107;400108;400109;400110 245150;245151;245152;245153;245154 245151 5 VIGGMTPVCSAR Unmodified 1246.6162 0.61621231 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 21.916 21.893 2 5.2719E-05 8443 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 115.78 107.56 505700000 0 0 0 0 0 0 47771000 47111000 46288000 0 0 0 55808000 50986000 53116000 0 0 0 67028000 68470000 66788000 0 0 2340300 21553 1307 20885 400111;400112;400113;400114;400115;400116;400117;400118;400119;400120 245155;245156;245157;245158 245158 4 VIGHEYFHNWTGNR Unmodified 1728.8121 0.81208666 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 1 3 3 3 3 3 3 22.078 22.081 2;3;4 3.0714E-14 9283 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 202.16 181.95 3019900000 331990000 298650000 268840000 2175200 0 890920 305550000 281820000 299460000 0 0 1943800 197120000 159550000 139690000 0 0 0 239010000 255410000 237810000 0 0 0 21554 94 20886 400121;400122;400123;400124;400125;400126;400127;400128;400129;400130;400131;400132;400133;400134;400135;400136;400137;400138;400139;400140;400141;400142;400143;400144;400145;400146;400147;400148;400149;400150;400151;400152;400153;400154;400155;400156;400157;400158;400159 245159;245160;245161;245162;245163;245164;245165;245166;245167;245168;245169;245170;245171;245172;245173;245174;245175;245176;245177;245178;245179;245180;245181;245182;245183;245184;245185 245167 26 VIGHLAHGNLEYK Unmodified 1449.7728 0.7728476 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 3 3 3 4 3 3 3 3 3 3 3 3 2 2 3 3 3 3 3 3 14.76 15.324 2;3;4 1.0723E-12 4627 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 196.88 186.36 1906000000 30524000 57081000 48355000 8593500 8236400 9849900 170150000 184350000 154370000 43311000 35624000 34995000 120990000 174190000 141100000 8560800 6903200 7742800 162630000 217920000 176290000 34145000 33862000 36267000 21555 644 20887 400160;400161;400162;400163;400164;400165;400166;400167;400168;400169;400170;400171;400172;400173;400174;400175;400176;400177;400178;400179;400180;400181;400182;400183;400184;400185;400186;400187;400188;400189;400190;400191;400192;400193;400194;400195;400196;400197;400198;400199;400200;400201;400202;400203;400204;400205;400206;400207;400208;400209;400210;400211;400212;400213;400214;400215;400216;400217;400218;400219;400220;400221;400222;400223;400224;400225;400226;400227;400228 245186;245187;245188;245189;245190;245191;245192;245193;245194;245195;245196;245197;245198;245199;245200;245201;245202;245203;245204;245205;245206;245207;245208;245209;245210;245211;245212;245213;245214;245215;245216;245217;245218;245219;245220;245221;245222;245223;245224;245225;245226;245227;245228;245229;245230;245231;245232;245233;245234 245233 49 VIGHLAHGNLEYKHPYLEDR Unmodified 2360.2026 0.20256299 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 18.461 18.633 4 0.073862 5777 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 37.237 34.093 23145000 0 0 0 1508600 1065300 1277800 0 0 0 4656200 4775800 4203300 0 0 0 0 2305900 0 0 0 0 0 0 3352400 21556 644 20888 400229;400230;400231;400232;400233;400234;400235;400236 245235;245236 245236 2 VIGIGSPR Unmodified 797.47594 0.4759373 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.65 19.044 2 0.0003704 7139 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143 100.23 1157300000 46051000 42161000 32667000 13850000 17046000 19047000 91810000 93281000 90294000 20250000 21061000 18776000 84721000 74070000 64598000 2806000 0 0 138540000 120920000 127060000 15685000 12496000 10065000 21557 1427 20889 400237;400238;400239;400240;400241;400242;400243;400244;400245;400246;400247;400248;400249;400250;400251;400252;400253;400254;400255;400256;400257;400258;400259;400260 245237;245238;245239;245240;245241;245242;245243;245244;245245;245246;245247;245248;245249;245250;245251;245252;245253;245254;245255 245250 19 VIGITNEEAISTAR Unmodified 1472.7835 0.78347187 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 4 6 4 1 1 1 5 4 4 1 1 1 4 3 5 1 1 1 6 3 5 1 1 1 30.548 29.221 2;3 8.7214E-15 12717 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 149.69 143.49 17644000000 1811500000 1805800000 1480700000 9489800 7909000 7818200 1575300000 1560200000 1597500000 4647000 4388700 4448000 1092200000 1105200000 950560000 1470200 1255300 832910 1520200000 1543500000 1552100000 3031900 1882900 2297400 21558 666 20890 400261;400262;400263;400264;400265;400266;400267;400268;400269;400270;400271;400272;400273;400274;400275;400276;400277;400278;400279;400280;400281;400282;400283;400284;400285;400286;400287;400288;400289;400290;400291;400292;400293;400294;400295;400296;400297;400298;400299;400300;400301;400302;400303;400304;400305;400306;400307;400308;400309;400310;400311;400312;400313;400314;400315;400316;400317;400318;400319;400320;400321;400322;400323;400324;400325 245256;245257;245258;245259;245260;245261;245262;245263;245264;245265;245266;245267;245268;245269;245270;245271;245272;245273;245274;245275;245276;245277;245278;245279;245280;245281;245282;245283;245284;245285;245286;245287;245288;245289;245290;245291;245292;245293;245294;245295;245296;245297;245298;245299;245300;245301;245302;245303;245304;245305;245306;245307;245308;245309;245310;245311;245312;245313;245314;245315;245316;245317;245318;245319;245320;245321;245322;245323;245324;245325;245326;245327 245292 60 VIGQNEAVDAVSNAIR Unmodified 1654.8638 0.86384745 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 1 1 2 1 1 2 2 2 2 2 2 1 2 2 2 2 2 1 1 2 37.071 35.192 2;3 8.5745E-19 16884 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 197.43 187.75 2401400000 279600000 219650000 189250000 4521700 1671300 2862200 317580000 286540000 312260000 11766000 10313000 9179700 81295000 115230000 128670000 0 0 0 154880000 132890000 137830000 1312300 1515600 2609500 21559 1662 20891 400326;400327;400328;400329;400330;400331;400332;400333;400334;400335;400336;400337;400338;400339;400340;400341;400342;400343;400344;400345;400346;400347;400348;400349;400350;400351;400352;400353;400354;400355;400356;400357;400358;400359;400360 245328;245329;245330;245331;245332;245333;245334;245335;245336;245337;245338;245339 245336 12 VIGQNEAVDAVSNAIRR Unmodified 1810.965 0.96495848 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 33.429 31.445 3 0.0043049 10784 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 53.403 52.714 22507000 0 0 0 2591000 3306100 3092800 0 0 0 3872200 3900400 3001900 0 0 0 0 0 0 0 0 0 1405400 547140 790120 21560 1662 20892 400361;400362;400363;400364;400365;400366;400367;400368;400369 245340;245341;245342 245342 3 VIGSTTYQEFSNIFEK Unmodified 1861.9098 0.90979459 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.664 47.228 2 1.8998E-06 19297 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 102.87 94.802 98912000 35024000 14453000 0 1429800 0 1733900 0 0 4093600 5287700 0 3270700 16577000 0 12957000 0 0 0 0 0 0 0 2105000 1980200 21561 658 20893 400370;400371;400372;400373;400374;400375;400376;400377;400378;400379;400380 245343 245343 1 VIGSTTYQEFSNIFEKDR Unmodified 2133.0378 0.037848654 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 43.714 41.922 3 8.0271E-10 17202 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 99.569 90.199 77395000 0 0 3370400 4492900 4540100 5656900 0 0 0 17207000 15153000 11771000 0 0 0 3867900 0 0 0 0 0 4371200 3936100 3028200 21562 658 20894 400381;400382;400383;400384;400385;400386;400387;400388;400389;400390;400391 245344;245345 245344 2 VIGTATSENGAQAISDYLGANGK Unmodified 2236.0972 0.097154447 868 P0AEK2 fabG 3-oxoacyl-[acyl-carrier-protein] reductase FabG yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 1 1 2 1 1 1 2 1 2 40.845 39.23 2;3 8.095E-44 19001 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 292.83 288.02 300750000 31823000 27454000 0 0 0 0 24802000 9560500 23486000 1577100 2786000 0 12114000 37602000 12327000 0 2551300 1670500 51635000 14474000 46890000 0 0 0 21563 868 20895 400392;400393;400394;400395;400396;400397;400398;400399;400400;400401;400402;400403;400404;400405;400406;400407;400408;400409;400410;400411;400412;400413 245346;245347;245348;245349;245350;245351;245352;245353;245354 245352 9 VIGVGGGGGNAVEHMVR Unmodified 1607.8202 0.8202085 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 3 2 2 2 24.014 23.087 2;3 1.463E-31 10359 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 243.85 225.1 6116600000 602400000 488570000 430930000 77311000 77235000 66177000 370120000 367290000 329720000 232190000 224100000 225470000 329890000 336060000 306290000 20832000 19681000 16339000 474500000 439560000 458020000 76529000 77601000 69810000 21564 502 20896 400414;400415;400416;400417;400418;400419;400420;400421;400422;400423;400424;400425;400426;400427;400428;400429;400430;400431;400432;400433;400434;400435;400436;400437;400438;400439;400440;400441;400442;400443;400444;400445;400446;400447;400448;400449;400450;400451;400452;400453;400454;400455;400456;400457;400458;400459;400460 245355;245356;245357;245358;245359;245360;245361;245362;245363;245364;245365;245366;245367;245368;245369;245370;245371;245372;245373;245374;245375;245376;245377;245378;245379;245380;245381;245382;245383;245384;245385;245386;245387;245388;245389;245390;245391;245392;245393;245394;245395;245396;245397 245364 42 VIGVSGCK Unmodified 818.43202 0.43202358 1149 P18196 minC Septum site-determining protein MinC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 12.558 13.38 2 0.0037473 3927 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.55 50.758 187160000 16768000 13969000 14006000 0 0 0 17470000 15052000 15336000 0 0 0 0 14497000 17533000 0 0 0 20980000 22400000 19148000 0 0 0 21565 1149 20897 400461;400462;400463;400464;400465;400466;400467;400468;400469;400470;400471 245398 245398 1 VIGYTDLPGR Unmodified 1089.5819 0.58185894 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.107 26.879 2 0.00011949 10029 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 128.69 118.7 804290000 26543000 0 23557000 2398900 2195500 2565800 104360000 95692000 98107000 11502000 12336000 11987000 64191000 64848000 61308000 2310500 1453200 1178800 66087000 65253000 68122000 4880800 6446100 6966700 21566 146 20898 400472;400473;400474;400475;400476;400477;400478;400479;400480;400481;400482;400483;400484;400485;400486;400487;400488;400489;400490;400491;400492;400493;400494 245399;245400;245401;245402;245403;245404;245405;245406;245407;245408 245401 6 VIGYTDLPGRLPTQSSQLYGTNLVNLLK Unmodified 3059.6655 0.66553557 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 52.766 51.397 3 2.2976E-16 20914 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 150.94 140.8 102460000 0 0 0 7924000 8950500 9745200 0 0 0 17562000 15146000 22816000 0 0 0 0 0 0 0 0 0 9937500 0 10376000 21567 146 20899 400495;400496;400497;400498;400499;400500;400501;400502 245409;245410;245411;245412;245413;245414 245409 6 VIHDISEMNR Unmodified 1212.5921 0.59210605 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 3 4 2 2 2 2 2 2 3 2 2 2 3 2 15.152 15.651 2;3 1.0162E-05 5241 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.52 162.94 2320200000 250020000 246070000 218540000 3277800 3916100 2745800 143180000 160620000 156200000 43478000 46422000 43280000 125190000 114530000 98965000 11372000 8683200 7663700 189210000 187880000 188820000 23424000 25519000 21241000 21568 1210 20900 400503;400504;400505;400506;400507;400508;400509;400510;400511;400512;400513;400514;400515;400516;400517;400518;400519;400520;400521;400522;400523;400524;400525;400526;400527;400528;400529;400530;400531;400532;400533;400534;400535;400536;400537;400538;400539;400540;400541;400542;400543;400544;400545;400546;400547;400548;400549;400550;400551;400552 245415;245416;245417;245418;245419;245420;245421;245422;245423;245424;245425;245426;245427;245428;245429;245430;245431;245432;245433;245434;245435;245436;245437;245438;245439;245440;245441;245442;245443;245444;245445;245446;245447;245448;245449;245450;245451;245452;245453;245454 245430 28 VIHILIQLIEK Unmodified 1317.8384 0.83840797 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 6 1 2 4 4 4 4 3 2 3 4 44.25 42.713 2;3 1.0286E-06 19829 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 143.03 143.03 994570000 112290000 126750000 58060000 0 0 1729700 123140000 122330000 114770000 0 0 0 54578000 14968000 74341000 0 0 0 85328000 79628000 26655000 0 0 0 21569 1658 20901 400553;400554;400555;400556;400557;400558;400559;400560;400561;400562;400563;400564;400565;400566;400567;400568;400569;400570;400571;400572;400573;400574;400575;400576;400577;400578;400579;400580;400581;400582;400583;400584;400585;400586;400587;400588;400589;400590;400591;400592;400593;400594;400595;400596;400597;400598;400599 245455;245456;245457;245458;245459;245460;245461;245462;245463;245464;245465;245466;245467;245468;245469;245470;245471;245472;245473;245474;245475;245476;245477;245478;245479;245480;245481;245482;245483;245484;245485;245486;245487;245488;245489;245490;245491;245492;245493;245494;245495;245496;245497;245498;245499;245500;245501;245502;245503;245504;245505;245506;245507;245508;245509;245510;245511;245512;245513;245514 245505 60 VIHQLEAGICWINTWGESPAEMPVGGYK Unmodified 3141.5052 0.50521188 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 52.176 50.971 3 1.6909E-07 24770 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 95.523 90.258 63759000 21371000 21738000 20650000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21570 1141 20902 400600;400601;400602 245515;245516;245517 245517 3 VIIAAHGNSLR Unmodified 1149.6618 0.66184059 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 1 1 2 2 1 2 2 2 1 1 1 14.358 15.081 2;3 2.644E-05 4802 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 145.72 140.24 8570700000 1114300000 1222600000 1173000000 9875800 11087000 10010000 659700000 798200000 724170000 3406800 1855600 1917300 380650000 360670000 114300000 0 0 0 673420000 678590000 628810000 1322200 1672600 1166000 21571 1652 20903 400603;400604;400605;400606;400607;400608;400609;400610;400611;400612;400613;400614;400615;400616;400617;400618;400619;400620;400621;400622;400623;400624;400625;400626;400627;400628;400629;400630;400631;400632;400633;400634;400635;400636;400637;400638 245518;245519;245520;245521;245522;245523;245524;245525;245526;245527;245528;245529;245530;245531;245532;245533;245534;245535;245536;245537;245538;245539;245540;245541;245542;245543;245544;245545 245526 27 VIIDTYHNHILDEEAIK Unmodified 2022.0422 0.042205751 1657 P63204 gadE Transcriptional regulator GadE yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 30.778 29.597 3;4 1.5787E-06 10202 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 92.211 82.289 117850000 0 0 0 0 0 0 0 0 0 21430000 22309000 23061000 0 0 0 17159000 14164000 19726000 0 0 0 0 0 0 21572 1657 20904 400639;400640;400641;400642;400643;400644;400645;400646;400647;400648;400649;400650 245546;245547;245548;245549;245550;245551;245552 245547 7 VIIEQADR Unmodified 942.51345 0.51344502 924 P0AFB5 glnL Nitrogen regulation protein NR(II) yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.452 16.046 2 0.074752 4327 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 54.549 36.514 40700000 0 0 0 0 0 0 3485200 3513600 5256000 0 2126100 2132300 3275000 4840500 0 1500900 0 0 5534400 3107300 4073400 0 0 1855200 21573 924 20905 400651;400652;400653;400654;400655;400656;400657;400658;400659;400660;400661;400662 245553 245553 1 VIIETGELKDEALIR Unmodified 1697.9564 0.95635086 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 2 2 2 2 2 2 2 2 34.866 33.383 2;3 5.4028E-20 16205 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 213.84 204.84 6857300000 47296000 312910000 246250000 1345700 1276400 1516000 938930000 859290000 915010000 0 0 0 580060000 629620000 609490000 0 0 0 549440000 588220000 576630000 0 0 0 21574 257 20906 400663;400664;400665;400666;400667;400668;400669;400670;400671;400672;400673;400674;400675;400676;400677;400678;400679;400680;400681;400682;400683;400684;400685;400686;400687;400688 245554;245555;245556;245557;245558;245559;245560;245561;245562;245563;245564;245565;245566;245567;245568;245569;245570;245571;245572;245573;245574;245575;245576;245577;245578;245579;245580;245581;245582;245583;245584 245562 31 VIINQIVDR Unmodified 1068.6291 0.62914348 854 P0AEF0 dnaC DNA replication protein DnaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.624 27.377 2 4.0379E-05 12526 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 151.5 136.85 171110000 24368000 24624000 16498000 0 0 0 15146000 14981000 14255000 0 0 0 6185600 11161000 7569700 0 0 0 12026000 11955000 12339000 0 0 0 21575 854 20907 400689;400690;400691;400692;400693;400694;400695;400696;400697;400698;400699;400700 245585;245586;245587;245588;245589 245588 3 VIINQIVDRR Unmodified 1224.7303 0.73025451 854 P0AEF0 dnaC DNA replication protein DnaC yes yes 0 0 1 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 22.544 22.126 3 0.039429 7431 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 42.395 39.983 6367100 0 0 0 548910 727940 475410 0 0 0 0 2740400 1874500 0 0 0 0 0 0 0 0 0 0 0 0 21576 854 20908 400701;400702;400703;400704;400705 245590 245590 1 VIIVPDGEHAGK Unmodified 1233.6717 0.67173657 1530 P39356 yjhU Uncharacterized transcriptional regulator YjhU yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 1 2 1 1 1 2 1 1 2 1 1 1 2 1 1 17.645 18.14 2;3 0.0010042 6758 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 72.928 50.78 129830000 10434000 17254000 12380000 0 424880 0 11938000 11453000 2453600 3892400 2920100 3801200 6598800 6398500 9626200 1016700 0 0 7362300 7050400 12057000 1099700 0 1668500 21577 1530 20909 400706;400707;400708;400709;400710;400711;400712;400713;400714;400715;400716;400717;400718;400719;400720;400721;400722;400723;400724;400725;400726;400727;400728;400729;400730 245591;245592;245593;245594;245595;245596 245592 5 VIKPIMDGLTPIAK Unmodified 1494.8844 0.88437189 1752 P69831 gatC Galactitol permease IIC component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 34.367 32.794 2;3 7.7167E-06 13162 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 101.32 101.32 2811800000 148040000 147680000 147220000 23004000 21981000 25372000 277030000 318460000 276990000 122470000 125910000 118680000 167360000 156580000 173690000 23323000 14609000 15738000 124900000 127730000 144920000 33310000 39994000 36828000 21578 1752 20910 400731;400732;400733;400734;400735;400736;400737;400738;400739;400740;400741;400742;400743;400744;400745;400746;400747;400748;400749;400750;400751;400752;400753;400754;400755;400756;400757;400758;400759;400760;400761;400762;400763;400764;400765;400766;400767;400768;400769;400770;400771;400772;400773;400774;400775 245597;245598;245599;245600;245601;245602;245603;245604;245605;245606;245607;245608;245609;245610;245611;245612;245613;245614;245615;245616;245617;245618;245619;245620;245621;245622;245623;245624;245625;245626;245627;245628;245629;245630;245631 245600 35 VILAGEVTTPVTVR Unmodified 1453.8504 0.85042922 68 P02413 rplO 50S ribosomal protein L15 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 2 3 3 3 2 2 2 2 2 2 2 3 2 2 3 2 36.515 34.891 2;3 1.3282E-11 16054 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 177.57 138.42 7922200000 851800000 855910000 833050000 36402000 34839000 33997000 387450000 403000000 432760000 93553000 74491000 72366000 386030000 425960000 363260000 100280000 55022000 62920000 800070000 739810000 622430000 86590000 86150000 84089000 21579 68 20911 400776;400777;400778;400779;400780;400781;400782;400783;400784;400785;400786;400787;400788;400789;400790;400791;400792;400793;400794;400795;400796;400797;400798;400799;400800;400801;400802;400803;400804;400805;400806;400807;400808;400809;400810;400811;400812;400813;400814;400815;400816;400817;400818;400819;400820;400821;400822;400823;400824;400825;400826;400827;400828;400829 245632;245633;245634;245635;245636;245637;245638;245639;245640;245641;245642;245643;245644;245645;245646;245647;245648;245649;245650;245651;245652;245653;245654;245655;245656;245657;245658;245659;245660;245661;245662;245663;245664;245665;245666;245667;245668;245669;245670;245671;245672;245673;245674;245675 245672 41 VILDSGTTTFEIAR Unmodified 1521.8039 0.80387296 735 P0ACK2 agaR Putative aga operon transcriptional repressor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.563 37.889 2 6.0786E-08 18301 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 165.11 147.25 87903000 8213300 6245000 6767200 0 0 0 7357800 7265800 5625100 0 0 0 8028200 6781700 7326800 0 0 0 8737800 6738100 8815700 0 0 0 21580 735 20912 400830;400831;400832;400833;400834;400835;400836;400837;400838;400839;400840;400841 245676;245677;245678;245679;245680;245681;245682 245677 7 VILGLSGGVDSSVTAMLLHR Unmodified 2024.1088 0.10884553 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 2 2 2 2 2 2 2 52.576 51.25 3 2.8778E-15 25030 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 154.12 152.51 1017000000 71465000 70322000 72187000 4065300 2578500 0 78579000 66297000 69625000 0 0 0 113770000 102550000 103650000 0 0 0 86494000 87899000 87547000 0 0 0 21581 86 20913 400842;400843;400844;400845;400846;400847;400848;400849;400850;400851;400852;400853;400854;400855;400856;400857;400858;400859;400860;400861;400862;400863;400864;400865;400866 245683;245684;245685;245686;245687;245688;245689;245690;245691;245692;245693;245694;245695;245696 245683 11 VILHGTMLAAAESAR Unmodified 1538.8239 0.8238969 1902 P77376 ydgJ Uncharacterized oxidoreductase YdgJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.97 25.822 3 6.1062E-07 11726 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 95.981 94.402 145450000 18481000 19150000 14943000 0 0 0 9771400 10438000 8832900 0 0 0 11816000 7634000 8434100 0 0 0 11391000 14317000 10241000 0 0 0 21582 1902 20914 400867;400868;400869;400870;400871;400872;400873;400874;400875;400876;400877;400878 245697;245698;245699;245700;245701;245702;245703 245700 7 VILLTLR Unmodified 826.56402 0.56402403 1655 P63183 kup Low affinity potassium transport system protein kup yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.047 36.096 2 0.0016502 17474 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 126.24 126.24 31075000 0 0 0 667450 706900 690120 0 4900100 4980900 1969500 2376000 0 0 0 1924100 0 0 0 3520500 4228700 3495000 1616200 0 0 21583 1655 20915 400879;400880;400881;400882;400883;400884;400885;400886;400887;400888;400889;400890 245704 245704 1 VILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTK Unmodified 4296.0128 0.012839055 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 50.22 48.818 4 6.0888E-13 23798 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.16 101.05 44537000 0 0 0 0 0 0 0 4264000 0 0 0 0 6605800 3470900 0 0 0 0 8669600 10336000 8843300 2347900 0 0 21584 997 20916 400891;400892;400893;400894;400895;400896;400897 245705 245705 1 VILVGER Unmodified 784.48069 0.48068833 1785 P75867 ycbZ Putative Lon protease homolog yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.693 19.987 2 0.0053719 6297 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 99.919 43.409 93837000 2457100 3671000 2573000 1620000 1542200 1845600 4690200 5722800 4624500 5376900 4419400 5063300 6240100 4628400 5678400 745430 667180 648340 10054000 10555000 11014000 0 0 0 21585 1785 20917 400898;400899;400900;400901;400902;400903;400904;400905;400906;400907;400908;400909;400910;400911;400912;400913;400914;400915;400916;400917;400918 245706;245707 245707 2 VILVGNLGQDPEVR Unmodified 1507.8358 0.83584179 1010 P0AGE0 ssb Single-stranded DNA-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 37.645 35.966 2;3 4.3315E-11 13182 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 203.94 199.93 2912700000 554390000 480220000 442500000 5294000 5254500 5167200 147750000 144220000 151030000 8806400 9770200 9785200 96358000 102600000 96469000 14255000 15690000 13898000 192080000 197490000 202750000 6656500 5834200 4410000 21586 1010 20918 400919;400920;400921;400922;400923;400924;400925;400926;400927;400928;400929;400930;400931;400932;400933;400934;400935;400936;400937;400938;400939;400940;400941;400942;400943;400944;400945;400946;400947;400948;400949;400950;400951;400952;400953;400954;400955;400956;400957;400958;400959 245708;245709;245710;245711;245712;245713;245714;245715;245716;245717;245718;245719;245720;245721;245722;245723;245724;245725;245726;245727;245728;245729;245730;245731;245732 245708 25 VILVNSNPATIMTDPEMADATYIEPIHWEVVR Unmodified 3623.8004 0.80039085 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 54.465 53.074 3 6.5566E-34 26155 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 198.85 197.06 900540000 228530000 206160000 199330000 0 0 0 0 0 0 0 0 0 23000000 23606000 20124000 0 0 0 67496000 66534000 65762000 0 0 0 21587 65 20919 400960;400961;400962;400963;400964;400965;400966;400967;400968 245733;245734;245735;245736;245737;245738 245737 6 VILVPGAQSAEAAQK Unmodified 1480.8249 0.82494275 1896 P77316 ybdR Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.778 26.242 2 3.0729E-06 11855 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 108.35 105.59 59384000 12473000 13826000 11242000 0 0 0 4858400 6535400 5146200 1938800 1994900 1369100 0 0 0 0 0 0 0 0 0 0 0 0 21588 1896 20920 400969;400970;400971;400972;400973;400974;400975;400976;400977 245739;245740;245741 245740 3 VIMPDAPDHGSR Unmodified 1293.6136 0.61356977 1520 P39298 yjfP Esterase YjfP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 2 3 1 1 1 1 2 2 2 2 1 15.461 16.279 2;3 4.7593E-05 5532 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 77.593 73.077 140000000 15497000 21023000 20820000 0 0 0 11318000 13407000 12744000 0 0 0 4771800 9104200 6617600 0 0 0 10953000 8400000 5343300 0 0 0 21589 1520 20921 400978;400979;400980;400981;400982;400983;400984;400985;400986;400987;400988;400989;400990;400991;400992;400993;400994;400995;400996;400997 245742;245743;245744;245745;245746;245747;245748;245749;245750;245751 245748 5 VIMVDHEGNK Unmodified 1140.5597 0.55974328 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.015 12.848 2 1.7273E-06 3605 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 157.33 153.22 391660000 33405000 29407000 28883000 0 0 0 27008000 28882000 32186000 0 0 0 32059000 36951000 33201000 0 0 0 39946000 34600000 35132000 0 0 0 21590 1360 20922 400998;400999;401000;401001;401002;401003;401004;401005;401006;401007;401008;401009 245752;245753;245754;245755;245756;245757;245758;245759;245760;245761;245762;245763 245756 10 VIMVDHEGNKVDGDQIMYIIAR Unmodified 2515.2563 0.2563144 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 40.429 38.731 3;4 4.5621E-15 19153 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.09 124.41 623140000 37870000 44988000 30107000 0 0 0 55334000 52240000 64286000 0 0 0 48867000 43540000 37730000 0 0 0 63510000 75240000 69431000 0 0 0 21591 1360 20923 401010;401011;401012;401013;401014;401015;401016;401017;401018;401019;401020;401021;401022;401023;401024;401025;401026;401027;401028;401029;401030 245764;245765;245766;245767;245768;245769;245770;245771;245772;245773;245774;245775;245776;245777;245778 245765 15 VINDDVIEAGQGFGTHPHK Unmodified 2032.9967 0.99665254 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.014 23.079 3;4 9.5406E-05 8056 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 69.737 67.639 472080000 74728000 66248000 51886000 6736400 5717800 6112500 39729000 36516000 39879000 0 0 0 22569000 26948000 24153000 0 0 0 25905000 0 33717000 5245800 5985400 0 21592 1587 20924 401031;401032;401033;401034;401035;401036;401037;401038;401039;401040;401041;401042;401043;401044;401045;401046 245779;245780 245779 2 VINDKGENGWLEIPIDQLVPGDIIK Unmodified 2774.4854 0.48544594 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 54.942 54.669 3 6.2724E-07 20565 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 102.71 100.43 85004000 0 0 348460 0 0 0 0 0 0 0 0 0 0 0 0 17964000 26682000 40009000 0 0 0 0 0 0 21593 647 20925 401047;401048;401049;401050 245781;245782;245783 245783 3 VINDNFGIIEGLMTTVHATTATQK Unmodified 2573.3159 0.31593777 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 3 3 1 1 1 3 5 4 1 1 1 4 4 3 1 4 4 3 1 1 1 54.117 52.698 2;3;4 5.1363E-60 24863 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 320.92 320.31 59951000000 3536900000 3235300000 2891600000 27884000 28335000 26724000 6420300000 6737800000 6275800000 34581000 18573000 17936000 5091400000 4763900000 4280500000 0 26533000 0 5752000000 5699100000 5052500000 9329200 9983600 13810000 21594 504 20926 401051;401052;401053;401054;401055;401056;401057;401058;401059;401060;401061;401062;401063;401064;401065;401066;401067;401068;401069;401070;401071;401072;401073;401074;401075;401076;401077;401078;401079;401080;401081;401082;401083;401084;401085;401086;401087;401088;401089;401090;401091;401092;401093;401094;401095;401096;401097;401098;401099;401100;401101;401102;401103;401104 245784;245785;245786;245787;245788;245789;245790;245791;245792;245793;245794;245795;245796;245797;245798;245799;245800;245801;245802;245803;245804;245805;245806;245807;245808;245809;245810;245811;245812;245813;245814;245815;245816;245817;245818;245819;245820;245821;245822;245823;245824;245825;245826;245827;245828;245829;245830;245831 245822 47 VINDNFGIIEGLMTTVHATTATQK Oxidation (M) 2589.3109 0.31085239 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 3 3 1 2 1 2 4 3 48.764 47.4 3 7.4123E-11 22835 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.36 129.99 781620000 38814000 53842000 19468000 0 0 0 107030000 99127000 107330000 0 0 0 39681000 52659000 33577000 0 0 0 53987000 96049000 80061000 0 0 0 21595 504 20926 401105;401106;401107;401108;401109;401110;401111;401112;401113;401114;401115;401116;401117;401118;401119;401120;401121;401122;401123;401124;401125;401126;401127;401128;401129;401130;401131 245832;245833;245834;245835;245836;245837;245838;245839;245840;245841;245842;245843;245844;245845;245846;245847;245848;245849;245850;245851;245852;245853;245854 245832 310 21 VINELTEK Unmodified 944.51786 0.51786169 233 P0A6D7 aroK Shikimate kinase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.507 16.298 2 0.00043484 5214 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.28 86.117 1028800000 78969000 77194000 69668000 1943000 1741100 1891400 99271000 101880000 95430000 0 0 0 77904000 67329000 59779000 0 0 1532700 100380000 98192000 95657000 0 0 0 21596 233 20927 401132;401133;401134;401135;401136;401137;401138;401139;401140;401141;401142;401143;401144;401145;401146;401147 245855;245856;245857;245858;245859;245860;245861;245862;245863;245864;245865;245866 245865 12 VINEPVK Unmodified 797.4647 0.46470391 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.344 13.129 2 0.0035831 3703 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.919 32.926 437730000 80625000 78654000 81091000 0 0 0 0 0 101050000 914810 0 0 17035000 16902000 15120000 0 0 0 17061000 14719000 14561000 0 0 0 21597 1831 20928 401148;401149;401150;401151;401152;401153;401154;401155;401156;401157;401158;401159;401160 245867;245868;245869;245870;245871;245872;245873 245868 7 VINESTNQNAAVK Unmodified 1386.7103 0.71030693 998 P0AG93 secF Protein translocase subunit SecF yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.191 12.793 2 2.4551E-12 3574 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 188.87 173.73 226020000 0 0 0 3034000 3841200 3652500 13761000 16372000 13814000 10834000 9440600 9491100 15304000 12013000 15555000 1960500 1518900 1477700 24471000 28823000 22089000 5967400 6361700 6234800 21598 998 20929 401161;401162;401163;401164;401165;401166;401167;401168;401169;401170;401171;401172;401173;401174;401175;401176;401177;401178;401179;401180;401181 245874;245875;245876;245877;245878;245879;245880;245881;245882;245883;245884 245883 11 VINGVVELPK Unmodified 1066.6386 0.63864553 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.483 28.886 2 0.0031968 11086 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 74.464 54.678 241050000 23840000 28253000 28821000 2112100 2091100 2303300 17881000 16216000 15926000 4590600 4646000 5208600 12586000 10806000 9766300 0 0 0 14254000 18931000 13912000 2817200 2705400 3386600 21599 1829 20930 401182;401183;401184;401185;401186;401187;401188;401189;401190;401191;401192;401193;401194;401195;401196;401197;401198;401199;401200;401201;401202 245885;245886;245887;245888;245889;245890;245891;245892;245893;245894 245886 10 VINNDPQIGDK Unmodified 1211.6146 0.61461563 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.207 14.99 2 1.5253E-07 4969 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.41 161.36 369120000 27763000 32708000 32554000 0 0 0 47645000 49631000 41801000 0 0 0 28390000 24796000 25789000 0 0 0 19167000 16121000 22758000 0 0 0 21600 709 20931 401203;401204;401205;401206;401207;401208;401209;401210;401211;401212;401213;401214 245895;245896;245897;245898;245899;245900;245901;245902;245903;245904;245905;245906 245895 12 VINPQGEIIATADAHQATR Unmodified 2004.0389 0.038851707 1976 Q47679 yafV Hydrolase YafV yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.176 26.954 3 4.2404E-10 12186 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.18 122.07 311020000 44489000 35847000 41016000 0 0 0 32251000 32067000 29132000 0 0 0 13873000 14971000 14685000 0 0 0 17407000 23197000 12089000 0 0 0 21601 1976 20932 401215;401216;401217;401218;401219;401220;401221;401222;401223;401224;401225;401226 245907;245908 245908 2 VINQGEGAIPAR Unmodified 1223.6622 0.66223452 533 P0A9L3 fklB FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.6 17.125 2 1.2813E-11 6005 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 183.47 176.25 6685200000 533230000 457720000 399240000 7718900 8676900 9669600 601150000 635290000 587220000 4943400 2711000 6548300 521840000 418710000 357840000 4553800 3534000 4703300 665120000 740010000 705840000 2112500 3478700 3303600 21602 533 20933 401227;401228;401229;401230;401231;401232;401233;401234;401235;401236;401237;401238;401239;401240;401241;401242;401243;401244;401245;401246;401247;401248;401249;401250 245909;245910;245911;245912;245913;245914;245915;245916;245917;245918;245919;245920;245921;245922;245923;245924;245925;245926;245927;245928;245929 245919 21 VINQLTGGLAGMAK Unmodified 1371.7544 0.75442035 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 2 3 3 3 2 2 2 3 2 2 2 2 2 3 3 2 3 3 3 34.392 32.885 2;3 2.8554E-14 14926 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 221.52 207.82 33578000000 1561000000 1571100000 1503200000 2484300000 2738900000 2821700000 1361800000 1364400000 1308500000 319860000 298430000 250260000 1048900000 935790000 1083300000 125710000 85965000 92512000 1663300000 1784200000 1689300000 2465600000 2485600000 2534400000 21603 542 20934 401251;401252;401253;401254;401255;401256;401257;401258;401259;401260;401261;401262;401263;401264;401265;401266;401267;401268;401269;401270;401271;401272;401273;401274;401275;401276;401277;401278;401279;401280;401281;401282;401283;401284;401285;401286;401287;401288;401289;401290;401291;401292;401293;401294;401295;401296;401297;401298;401299;401300;401301;401302;401303;401304;401305;401306;401307;401308;401309 245930;245931;245932;245933;245934;245935;245936;245937;245938;245939;245940;245941;245942;245943;245944;245945;245946;245947;245948;245949;245950;245951;245952;245953;245954;245955;245956;245957;245958;245959;245960;245961;245962;245963;245964;245965;245966;245967;245968;245969;245970;245971;245972;245973;245974;245975;245976;245977;245978;245979;245980 245977 49 VINQLTGGLAGMAK Oxidation (M) 1387.7493 0.74933497 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 5 6 5 2 2 2 4 3 3 3 3 2 1 1 3 3 2 4 6 5 28.467 27.052 2;3 1.3127E-10 12511 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 158.79 148.42 849820000 26331000 21325000 12093000 93380000 102730000 100630000 26256000 27665000 27646000 12056000 9451700 8446100 20685000 14311000 13665000 0 755650 716080 33910000 31107000 25758000 75370000 99259000 66270000 21604 542 20934 401310;401311;401312;401313;401314;401315;401316;401317;401318;401319;401320;401321;401322;401323;401324;401325;401326;401327;401328;401329;401330;401331;401332;401333;401334;401335;401336;401337;401338;401339;401340;401341;401342;401343;401344;401345;401346;401347;401348;401349;401350;401351;401352;401353;401354;401355;401356;401357;401358;401359;401360;401361;401362;401363;401364;401365;401366;401367;401368;401369;401370;401371;401372;401373;401374;401375;401376;401377;401378;401379;401380 245981;245982;245983;245984;245985;245986;245987;245988;245989;245990;245991;245992;245993;245994;245995;245996;245997;245998;245999;246000;246001;246002;246003;246004;246005;246006;246007;246008;246009;246010;246011;246012;246013;246014;246015;246016;246017;246018;246019;246020;246021;246022;246023;246024;246025;246026;246027;246028;246029;246030;246031;246032;246033;246034;246035;246036;246037;246038;246039;246040;246041;246042;246043;246044;246045 245996 325 64 VINSGQVCNCAER Unmodified 1505.6715 0.67149535 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 1 1 2 2 2 1 2 1 2 2 2 2 13.171 14.018 2;3 2.2476E-31 4287 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 259.55 246.93 4567000000 997530000 1112500000 882370000 2466000 2039900 1666100 151100000 159340000 128800000 0 863800 0 131230000 131840000 128830000 0 0 0 234700000 243000000 258680000 0 0 0 21605 1264 20935 401381;401382;401383;401384;401385;401386;401387;401388;401389;401390;401391;401392;401393;401394;401395;401396;401397;401398;401399;401400;401401;401402;401403;401404;401405;401406;401407;401408;401409 246046;246047;246048;246049;246050;246051;246052;246053;246054;246055;246056;246057;246058;246059 246052 13 VINYLNK Unmodified 862.49125 0.49125301 650 P0ABD3 bfr Bacterioferritin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 2 2 2 18.552 18.97 1;2 0.0010258 7360 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.53 97.844 580410000 76819000 76189000 69047000 833160 978310 1054200 54619000 59057000 55875000 10366000 8331200 9183800 18794000 17335000 17406000 0 0 0 30960000 38120000 35444000 0 0 0 21606 650 20936 401410;401411;401412;401413;401414;401415;401416;401417;401418;401419;401420;401421;401422;401423;401424;401425;401426;401427;401428;401429;401430;401431;401432;401433;401434;401435;401436;401437;401438;401439 246060;246061;246062;246063;246064;246065;246066;246067;246068;246069;246070;246071;246072;246073;246074;246075;246076 246063 17 VIPATILGIQSDR Unmodified 1381.7929 0.79291434 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 41.058 39.395 2;3 3.6962E-07 18266 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 110.8 100.19 4989300000 463260000 436240000 430160000 8589500 7590400 8594500 446040000 393460000 387410000 31247000 29413000 25853000 317820000 301670000 270890000 11753000 5937100 5468200 458300000 465950000 451540000 10715000 9431500 11991000 21607 62 20937 401440;401441;401442;401443;401444;401445;401446;401447;401448;401449;401450;401451;401452;401453;401454;401455;401456;401457;401458;401459;401460;401461;401462;401463;401464;401465;401466;401467;401468;401469;401470;401471;401472;401473;401474;401475;401476;401477;401478;401479;401480 246077;246078;246079;246080;246081;246082;246083;246084;246085;246086;246087;246088;246089;246090;246091;246092;246093;246094;246095;246096;246097;246098;246099;246100;246101;246102;246103;246104;246105;246106;246107;246108;246109;246110;246111 246111 35 VIPGFMIQGGGFTEQMQQK Unmodified 2095.0231 0.023066988 952 P0AFL3 ppiA Peptidyl-prolyl cis-trans isomerase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 3 2 1 2 2 2 47.38 46.106 2;3 1.6271E-22 22857 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 189.3 160 1205300000 57901000 151900000 52899000 0 0 0 47331000 46630000 43705000 0 0 0 48148000 129350000 117410000 0 1947300 0 161960000 175970000 170150000 0 0 0 21608 952 20938 401481;401482;401483;401484;401485;401486;401487;401488;401489;401490;401491;401492;401493;401494;401495;401496;401497;401498;401499;401500;401501 246112;246113;246114;246115;246116;246117;246118;246119;246120;246121;246122;246123;246124;246125;246126;246127;246128 246113 17 VIPLPDEQATLDLGER Unmodified 1764.9258 0.92577901 917 P0AF67 tsaE tRNA threonylcarbamoyladenosine biosynthesis protein TsaE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 1 1 1 2 1 2 2 2 2 2 2 44.678 43.059 2;3 2.0407E-13 21173 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 184.03 164.27 530200000 68031000 65947000 55764000 1641200 0 1699700 43373000 32484000 27898000 3032500 4035300 2246500 33144000 29844000 24900000 0 0 0 47954000 48002000 40199000 0 0 0 21609 917 20939 401502;401503;401504;401505;401506;401507;401508;401509;401510;401511;401512;401513;401514;401515;401516;401517;401518;401519;401520;401521;401522;401523;401524;401525;401526;401527;401528;401529 246129;246130;246131;246132;246133;246134;246135;246136;246137;246138;246139;246140;246141 246134 11 VIPSIAYTEPEVAWVGLTEK Unmodified 2201.162 0.16198654 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 4 3 4 3 2 2 2 2 3 3 2 3 2 2 2 3 2 3 3 3 4 54.102 52.822 2;3;4 2.6511E-14 26139 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.09 162.91 35730000000 1247200000 1239000000 1106900000 4249700000 4565300000 4454600000 967000000 1003700000 961730000 280900000 311740000 303010000 870610000 824090000 762030000 198140000 130460000 130100000 1284400000 1120000000 1120000000 2898400000 2635200000 3065800000 21610 542 20940 401530;401531;401532;401533;401534;401535;401536;401537;401538;401539;401540;401541;401542;401543;401544;401545;401546;401547;401548;401549;401550;401551;401552;401553;401554;401555;401556;401557;401558;401559;401560;401561;401562;401563;401564;401565;401566;401567;401568;401569;401570;401571;401572;401573;401574;401575;401576;401577;401578;401579;401580;401581;401582;401583;401584;401585;401586;401587;401588;401589;401590;401591;401592;401593;401594;401595 246142;246143;246144;246145;246146;246147;246148;246149;246150;246151;246152;246153;246154;246155;246156;246157;246158;246159;246160;246161;246162;246163;246164;246165;246166;246167;246168;246169;246170;246171;246172;246173;246174;246175;246176;246177;246178;246179;246180;246181;246182;246183;246184;246185;246186;246187;246188;246189;246190;246191;246192;246193;246194 246154 52 VIPSIAYTEPEVAWVGLTEKEAK Unmodified 2529.3367 0.33665644 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 50.066 48.704 3 0.083419 17623 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 32.081 29.469 165180000 0 0 0 50379000 51745000 49107000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6367900 0 7576000 21611 542 20941 401596;401597;401598;401599;401600 246195 246195 1 VIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHR Unmodified 4460.1489 0.1488958 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 51.549 50.297 5 2.7302E-27 24360 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.36 135.03 581130000 51188000 54288000 48316000 1351800 0 0 52376000 64147000 51378000 0 0 0 39388000 45683000 32093000 0 0 0 42213000 40941000 57765000 0 0 0 21612 1192 20942 401601;401602;401603;401604;401605;401606;401607;401608;401609;401610;401611;401612;401613 246196;246197;246198;246199;246200;246201;246202;246203;246204 246202 9 VIPVAIR Unmodified 766.50651 0.50650915 1234 P24173;Q47689 rfaC;mmuP Lipopolysaccharide heptosyltransferase 1;Probable S-methylmethionine permease yes no 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 24.516 23.324 2 0.027682 8294 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 69.39 56.182 32423000 0 1965600 0 1047300 789420 953360 3351300 3350700 3690600 3734900 3146300 3340700 0 0 0 0 0 0 0 0 0 2348000 2384300 2320300 21613 1234 20943 401614;401615;401616;401617;401618;401619;401620;401621;401622;401623;401624;401625;401626 246205;246206;246207 246205 3 VIPYPIEIISGNEEAR Unmodified 1798.9465 0.94651445 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.297 48.89 2;3 5.35E-11 24023 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155.99 152.97 269310000 32623000 33226000 28396000 0 0 0 16414000 13368000 17768000 0 0 0 20041000 17600000 17116000 0 0 0 26345000 25509000 20906000 0 0 0 21614 953 20944 401627;401628;401629;401630;401631;401632;401633;401634;401635;401636;401637;401638;401639;401640;401641;401642;401643;401644;401645;401646;401647;401648;401649;401650 246208;246209;246210;246211;246212;246213;246214;246215;246216;246217;246218;246219 246210 12 VIPYWNETILPR Unmodified 1499.8136 0.81364979 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 1 1 2 2 2 2 3 3 1 1 1 48.357 46.982 2;3 1.805E-08 23174 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 182.98 174.4 14006000000 1992800000 1778300000 1640400000 7502300 6392800 6380700 1052700000 962210000 935870000 2062400 0 1246000 784070000 739500000 650550000 0 0 0 1044900000 1213500000 1179400000 2650100 2523700 2835800 21615 1652 20945 401651;401652;401653;401654;401655;401656;401657;401658;401659;401660;401661;401662;401663;401664;401665;401666;401667;401668;401669;401670;401671;401672;401673;401674;401675;401676;401677;401678;401679;401680;401681;401682;401683;401684;401685 246220;246221;246222;246223;246224;246225;246226;246227;246228;246229;246230;246231;246232;246233;246234;246235;246236;246237;246238;246239;246240;246241;246242;246243;246244;246245;246246;246247;246248;246249;246250;246251;246252 246222 32 VIQDNLK Unmodified 828.47052 0.47051757 658 P0ABH9 clpA ATP-dependent Clp protease ATP-binding subunit ClpA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 13.483 14.211 1 0.0026246 4132 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 129.68 50.232 99436000 3033400 4563500 4732700 0 0 0 15720000 14395000 12257000 0 0 1115300 0 0 0 0 0 0 14705000 13849000 15066000 0 0 0 21616 658 20946 401686;401687;401688;401689;401690;401691;401692;401693;401694;401695 246253;246254 246254 0 VIQNPELSLAGGAIR Unmodified 1536.8624 0.86239089 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 2 1 36.651 35.272 2;3 2.8504E-11 11930 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 158.56 155.94 510770000 56031000 43526000 42831000 0 0 0 37348000 37079000 35270000 1651200 1300500 0 25327000 25903000 30831000 32469000 24749000 29052000 24266000 34007000 29133000 0 0 0 21617 222 20947 401696;401697;401698;401699;401700;401701;401702;401703;401704;401705;401706;401707;401708;401709;401710;401711;401712;401713;401714;401715;401716;401717;401718;401719;401720;401721;401722;401723;401724;401725 246255;246256;246257;246258;246259;246260;246261;246262;246263;246264;246265;246266;246267;246268;246269;246270;246271 246257 7 VIRPDILPVIK Unmodified 1261.8122 0.81219322 223 P0A6A0 ubiB Probable protein kinase UbiB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.454 33.699 3 0.065183 13332 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 30.872 30.872 80174000 4294200 0 3641900 1187700 1109100 1628100 6325300 6282100 5419400 3089700 2409700 2191300 6646100 4201600 5037800 0 0 0 7140000 6935400 6153900 1995800 2181500 2303100 21618 223 20948 401726;401727;401728;401729;401730;401731;401732;401733;401734;401735;401736;401737;401738;401739;401740;401741;401742;401743;401744;401745 246272;246273;246274 246273 3 VISDLPLR Unmodified 911.54402 0.54401687 1066 P11071 aceK Isocitrate dehydrogenase kinase/phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.004 27.08 2 0.0016218 12543 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.32 68.526 86095000 23831000 19372000 21168000 380360 0 0 4514100 0 0 0 0 0 2026300 0 2451100 1354600 1481400 1524200 2763200 2685900 2542200 0 0 0 21619 1066 20949 401746;401747;401748;401749;401750;401751;401752;401753;401754;401755;401756;401757;401758 246275;246276;246277 246275 3 VISEAGHEGK Unmodified 1025.5142 0.5141733 1523 P39315 qorB Quinone oxidoreductase 2 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 9.5295 10.356 2 0.00448 2360 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 66.962 63.554 25765000 7827700 1585100 4341400 0 0 0 0 0 0 0 0 0 1539700 1548000 0 0 0 0 1996000 2237900 4689700 0 0 0 21620 1523 20950 401759;401760;401761;401762;401763;401764;401765;401766 246278;246279;246280 246279 3 VISEQQQIQEK Unmodified 1328.6936 0.69359423 1895 P77307 fetB Probable iron export permease protein FetB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 13.378 13.988 2 0.0018011 3557 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 76.465 54.379 24959000 0 0 0 832980 0 0 3708200 2765000 0 1758400 2585400 2590300 0 0 1957000 0 0 0 2189900 2715700 2331200 1525300 0 0 21621 1895 20951 401767;401768;401769;401770;401771;401772;401773;401774;401775;401776;401777 246281 246281 1 VISHEQQMR Unmodified 1126.5553 0.55532661 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 10.41 11.264 2;3 0.000274 2603 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.55 126.4 926470000 0 0 0 0 0 0 114320000 114270000 87848000 0 0 0 112250000 114730000 109120000 0 0 0 102940000 84592000 86400000 0 0 0 21622 1467 20952 401778;401779;401780;401781;401782;401783;401784;401785;401786;401787;401788;401789;401790;401791;401792;401793;401794;401795 246282;246283;246284;246285;246286;246287;246288;246289;246290;246291;246292;246293 246283 12 VISHVEEEAK Unmodified 1139.5823 0.58225287 1502 P37903 uspF Universal stress protein F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 2 2 3 1 2 2 2 2 2 2 10.757 11.579 2;3 1.4608E-06 2951 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 164.68 147.91 2834900000 307140000 183360000 302490000 2360800 1653500 0 483970000 463650000 451790000 0 2908100 0 131260000 140340000 113400000 0 0 0 74055000 77452000 99104000 0 0 0 21623 1502 20953 401796;401797;401798;401799;401800;401801;401802;401803;401804;401805;401806;401807;401808;401809;401810;401811;401812;401813;401814;401815;401816;401817;401818;401819;401820;401821;401822 246294;246295;246296;246297;246298;246299;246300;246301;246302;246303;246304;246305 246299 12 VISIITLK Unmodified 885.5899 0.58990443 336 P0A7E3 pyrE Orotate phosphoribosyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 36.971 35.345 2 0.053768 17159 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 58.981 58.981 83990000 15210000 14786000 15512000 0 0 0 0 4510600 3409500 0 0 0 2474600 2622300 3934100 0 0 0 8795800 5955700 6779300 0 0 0 21624 336 20954 401823;401824;401825;401826;401827;401828;401829;401830;401831;401832;401833 246306;246307;246308;246309 246306 1 VISLINQHR Unmodified 1078.6247 0.6247268 1078 P12295 ung Uracil-DNA glycosylase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 17.18 17.887 2;3 1.9578E-08 6504 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 197.65 114.98 682830000 40912000 41696000 48710000 0 0 0 89125000 89041000 75076000 0 0 0 38817000 41879000 40674000 0 0 0 65845000 55818000 55233000 0 0 0 21625 1078 20955 401834;401835;401836;401837;401838;401839;401840;401841;401842;401843;401844;401845;401846;401847;401848;401849;401850;401851;401852;401853;401854;401855;401856;401857 246310;246311;246312;246313;246314;246315;246316;246317;246318;246319;246320;246321;246322;246323;246324;246325;246326 246314 17 VISLPAPLR Unmodified 964.60695 0.60695147 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.852 35.14 2 6.6247E-05 16172 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 144.83 125.36 464070000 0 3466800 4729000 0 277270 0 72911000 74205000 75537000 4310300 4534700 3938800 40748000 45317000 42797000 0 1794700 1399100 29817000 27420000 25819000 1886700 1497200 1663300 21626 506 20956 401858;401859;401860;401861;401862;401863;401864;401865;401866;401867;401868;401869;401870;401871;401872;401873;401874;401875;401876;401877;401878;401879;401880 246327;246328;246329;246330;246331;246332;246333;246334;246335;246336;246337;246338;246339 246338 11 VISQVEAQR Unmodified 1028.5615 0.56145784 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.626 13.453 2 6.0865E-06 3765 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 172.15 102.15 1008700000 77725000 64294000 87584000 0 2105200 1588600 111230000 109780000 96065000 0 2233400 0 79592000 62220000 74527000 0 0 0 81477000 85830000 72417000 0 0 0 21627 948 20957 401881;401882;401883;401884;401885;401886;401887;401888;401889;401890;401891;401892;401893;401894;401895;401896 246340;246341;246342;246343;246344;246345;246346;246347;246348;246349;246350;246351;246352;246353 246351 13 VISVQEMHAQIK Unmodified 1381.7388 0.73877028 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 1 1 1 2 2 2 2 2 2 2 2 2 21.84 21.789 2;3 1.3214E-06 8849 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 177.78 123.81 2543400000 583270000 604160000 460950000 2534600 0 1465200 0 7083300 6895500 1651100 0 0 67312000 59979000 58812000 0 0 0 245130000 214950000 210260000 5862700 7118400 5997100 21628 65 20958 401897;401898;401899;401900;401901;401902;401903;401904;401905;401906;401907;401908;401909;401910;401911;401912;401913;401914;401915;401916;401917;401918;401919;401920;401921;401922;401923;401924;401925;401926 246354;246355;246356;246357;246358;246359;246360;246361;246362;246363;246364;246365;246366;246367;246368;246369;246370;246371;246372 246361 19 VITASDSSGTVVDESGFTK Unmodified 1898.9109 0.91091681 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 29.748 28.407 2 1.3328E-29 13378 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 280.23 275.72 638720000 169410000 162000000 143670000 0 932860 0 24380000 19010000 18754000 0 0 0 13272000 13798000 11786000 0 0 0 18611000 21537000 21549000 0 0 0 21629 26 20959 401927;401928;401929;401930;401931;401932;401933;401934;401935;401936;401937;401938;401939 246373;246374;246375;246376;246377 246375 4 VITDIAGSSAWFER Unmodified 1550.7729 0.77290718 242 P0A6G3 pncC Nicotinamide-nucleotide amidohydrolase PncC yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.23 43.815 2 5.1642E-09 21167 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 186.81 160.87 234390000 19186000 14513000 16744000 0 0 0 30951000 27352000 28332000 0 0 0 10411000 9335900 7768500 0 0 0 23501000 24882000 21409000 0 0 0 21630 242 20960 401940;401941;401942;401943;401944;401945;401946;401947;401948;401949;401950;401951 246378;246379;246380;246381;246382;246383;246384 246382 7 VITGGEK Unmodified 702.3912 0.39120462 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 7.9499 8.7446 2 0.0028071 2433 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.61 7.3258 1009100000 359450000 318130000 295170000 0 0 0 8334500 5753200 6060000 0 0 0 5626600 5692100 4583200 0 0 0 278440 0 0 0 0 0 21631 1925 20961 401952;401953;401954;401955;401956;401957;401958;401959;401960;401961;401962;401963;401964 246385;246386;246387;246388;246389 246389 5 VITLQPHAGEMQEAR Unmodified 1678.8461 0.8460889 1891 P77279 fetA Probable iron export ATP-binding protein FetA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 20.564 20.971 3 0.0062166 7774 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 53.168 50.929 209130000 12951000 12991000 11912000 963920 0 0 20804000 22393000 22494000 0 0 0 19062000 17921000 17274000 0 0 0 17667000 18256000 14444000 0 0 0 21632 1891 20962 401965;401966;401967;401968;401969;401970;401971;401972;401973;401974;401975;401976;401977 246390;246391 246391 1 VITLTGK Unmodified 730.45889 0.45889025 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.061 17.541 2 0.0023399 6366 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.02 31.76 3866400000 349730000 320490000 293950000 0 0 0 412330000 423380000 413850000 2891200 2336900 2135200 215350000 228140000 256690000 0 0 779860 331510000 314360000 292590000 2230400 1800500 1825800 21633 1658 20963 401978;401979;401980;401981;401982;401983;401984;401985;401986;401987;401988;401989;401990;401991;401992;401993;401994;401995;401996 246392;246393;246394;246395;246396;246397;246398;246399;246400;246401;246402 246393 11 VITSGQLVYK Unmodified 1106.6336 0.63356015 1241 P24202 mrr Mrr restriction system protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.955 22.375 2 0.00022235 9789 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.21 79.108 201730000 14868000 13265000 11768000 0 0 0 20201000 21445000 22823000 0 0 0 15956000 11461000 11472000 0 0 0 16183000 23663000 18624000 0 0 0 21634 1241 20964 401997;401998;401999;402000;402001;402002;402003;402004;402005;402006;402007;402008 246403;246404;246405;246406;246407;246408;246409;246410 246405 8 VIVAAPVIAELNMPR Unmodified 1591.912 0.91198362 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 50.666 49.248 2;3 2.9087E-07 20071 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 85.457 80.752 84180000 4193900 3457800 2787700 0 0 0 7319900 8575500 7620500 5948700 7228000 6589700 3241000 3911300 3431500 0 0 0 6216900 5171900 8485500 0 0 0 21635 1877 20965 402009;402010;402011;402012;402013;402014;402015;402016;402017;402018;402019;402020;402021;402022;402023;402024 246411;246412;246413 246412 3 VIVDEELESVWTGK Unmodified 1602.8141 0.8141033 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 2 2 2 1 1 2 2 3 2 2 3 1 1 3 2 3 47.478 46.167 2;3 2.9405E-14 22231 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 181.44 166.3 10348000000 120720000 103960000 93678000 2338700 1879400 1264300 755960000 775230000 764690000 0 0 0 1003300000 884740000 831290000 0 861310 693650 1716100000 1674900000 1616100000 0 0 0 21636 993 20966 402025;402026;402027;402028;402029;402030;402031;402032;402033;402034;402035;402036;402037;402038;402039;402040;402041;402042;402043;402044;402045;402046;402047;402048;402049;402050;402051;402052;402053;402054;402055;402056;402057;402058;402059 246414;246415;246416;246417;246418;246419;246420;246421;246422;246423;246424;246425;246426;246427;246428;246429;246430;246431;246432;246433;246434;246435;246436;246437;246438;246439;246440;246441;246442;246443;246444;246445;246446;246447;246448;246449;246450;246451;246452;246453;246454;246455;246456;246457;246458;246459;246460;246461 246435 48 VIVDEELESVWTGKK Unmodified 1730.9091 0.90906631 993 P0AG80 ugpB sn-glycerol-3-phosphate-binding periplasmic protein UgpB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 39.456 37.681 2;3 1.1226E-16 18310 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 186.81 180.38 1542600000 9062700 0 0 3691200 3759000 2992200 107690000 97582000 111530000 0 0 0 115510000 118390000 104740000 0 0 0 288680000 253510000 320180000 1989100 1533500 1761200 21637 993 20967 402060;402061;402062;402063;402064;402065;402066;402067;402068;402069;402070;402071;402072;402073;402074;402075;402076;402077;402078;402079;402080;402081;402082;402083;402084 246462;246463;246464;246465;246466;246467;246468;246469;246470;246471;246472;246473;246474;246475;246476 246468 15 VIVEGINLVK Unmodified 1082.6699 0.66994566 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.965 34.412 2 0.00013278 16539 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.46 114.46 9310200000 1295100000 1237000000 1149600000 39891000 36780000 36909000 286820000 311910000 327540000 89700000 91331000 81843000 515140000 472930000 442490000 86418000 64855000 74030000 752600000 842200000 831120000 79442000 82666000 81781000 21638 1625 20968 402085;402086;402087;402088;402089;402090;402091;402092;402093;402094;402095;402096;402097;402098;402099;402100;402101;402102;402103;402104;402105;402106;402107;402108 246477;246478;246479;246480;246481;246482;246483;246484;246485;246486;246487;246488;246489;246490;246491;246492;246493;246494;246495;246496;246497;246498;246499;246500;246501;246502;246503;246504 246495 28 VIVEGINLVKK Unmodified 1210.7649 0.76490868 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 26.747 25.59 2;3 5.2986E-05 9162 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 98.943 96.444 209150000 0 0 0 15089000 11660000 15461000 0 0 0 22711000 21491000 12113000 0 0 0 19754000 13599000 14786000 0 0 0 20453000 19030000 23003000 21639 1625 20969 402109;402110;402111;402112;402113;402114;402115;402116;402117;402118;402119;402120;402121;402122;402123;402124;402125;402126;402127;402128;402129;402130;402131;402132 246505;246506;246507;246508;246509;246510;246511;246512;246513;246514;246515;246516;246517;246518;246519;246520;246521;246522;246523;246524;246525;246526;246527 246518 23 VIVEGVVK Unmodified 841.5273 0.52730417 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 20.12 20.497 2 0.0041594 7912 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 82.671 47.847 140230000 139770000 0 0 465070 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21640 1412 20970 402133;402134;402135;402136 246528;246529;246530 246529 3 VIVEQGIK Unmodified 884.53312 0.53311783 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.187 17.003 2 0.0012251 5580 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 110.63 52.466 1336300000 88512000 104670000 87755000 0 0 0 127420000 147460000 132610000 0 0 0 93794000 95959000 89681000 0 0 0 109180000 133320000 125950000 0 0 0 21641 253 20971 402137;402138;402139;402140;402141;402142;402143;402144;402145;402146;402147;402148 246531;246532;246533;246534;246535;246536;246537;246538;246539;246540;246541 246540 10 VIVNVVAE Unmodified 841.49092 0.49091866 364 P0A7R1 rplI 50S ribosomal protein L9 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.411 32.994 2 0.007018 12107 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 84.025 84.025 197280000 35146000 30137000 25996000 5511700 4586000 3505800 8740600 9400300 10397000 0 3231400 4762500 27565000 0 0 5689600 516370 555380 0 0 0 7180600 7099100 7264400 21642 364 20972 402149;402150;402151;402152;402153;402154;402155;402156;402157;402158;402159;402160;402161;402162;402163;402164;402165;402166 246542;246543;246544;246545;246546;246547;246548;246549;246550;246551;246552 246542 10 VIVPVHYAGVACEMDTIMALAK Unmodified 2387.2051 0.20513045 1310 P27833 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.873 51.523 3 9.5874E-16 25225 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 153.06 150.09 741990000 50201000 52649000 45298000 2467500 0 2153200 53943000 61190000 53710000 7024700 4097500 6301700 59882000 60329000 51298000 0 0 0 73514000 73300000 76618000 2372000 5635900 0 21643 1310 20973 402167;402168;402169;402170;402171;402172;402173;402174;402175;402176;402177;402178;402179;402180;402181;402182;402183;402184;402185 246553;246554;246555;246556;246557;246558;246559;246560;246561;246562;246563;246564 246560 12 VIVSEALR Unmodified 885.52837 0.5283668 860 P0AEH3 elaA Protein ElaA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.305 21.653 2 0.00030221 8913 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.94 64.682 524420000 34419000 36785000 30422000 0 0 0 66294000 64474000 79228000 0 0 0 35361000 32231000 33991000 0 0 0 42248000 37263000 31700000 0 0 0 21644 860 20974 402186;402187;402188;402189;402190;402191;402192;402193;402194;402195;402196;402197 246565;246566;246567;246568 246566 3 VIVSGLQR Unmodified 870.5287 0.52870115 1477 P37636 mdtE Multidrug resistance protein MdtE yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 18.787 19.152 2 0.00052127 6115 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 134.44 89.826 259680000 14824000 13743000 14707000 4177900 4349500 3436100 43258000 46640000 35858000 21529000 18381000 16512000 4226200 5014400 2432600 0 0 0 0 6190500 2834700 567590 0 997610 21645 1477 20975 402198;402199;402200;402201;402202;402203;402204;402205;402206;402207;402208;402209;402210;402211;402212;402213;402214;402215;402216;402217;402218 246569;246570;246571;246572;246573;246574;246575;246576 246569 8 VIVSQLHR Unmodified 950.56615 0.56614929 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 2 1 1 1 1 1 1 13.883 14.415 2 4.6205E-09 3638 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 204.37 163.42 17255000000 261770000 243410000 232530000 8198900 11788000 12279000 216090000 186090000 158360000 1168400000 1364400000 1320100000 209260000 267510000 219890000 2660600000 1095800000 1110800000 231320000 265100000 279810000 1910300000 1959600000 1861500000 21646 463 20976 402219;402220;402221;402222;402223;402224;402225;402226;402227;402228;402229;402230;402231;402232;402233;402234;402235;402236;402237;402238;402239;402240;402241;402242;402243;402244;402245;402246 246577;246578;246579;246580;246581;246582;246583;246584;246585;246586;246587;246588;246589;246590;246591;246592;246593;246594;246595;246596;246597;246598;246599;246600;246601;246602;246603;246604;246605 246591 27 VIVTDMDGTFLNDAK Unmodified 1637.7971 0.79707302 1773 P75792 ybiV Sugar phosphatase YbiV yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 42.023 40.435 2 6.3187E-15 19850 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 234.39 222.23 177200000 27035000 28590000 26056000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30814000 32067000 32640000 0 0 0 21647 1773 20977 402247;402248;402249;402250;402251;402252 246606 246606 1 VIVTGCLGAK Unmodified 1016.5689 0.56885141 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.761 20.99 2 3.1432E-05 8401 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 144.38 130.8 411560000 30006000 33390000 22556000 4946700 5379000 5019400 30996000 26811000 31720000 4614800 3375300 3279000 24920000 22889000 23440000 0 0 0 52424000 38866000 44235000 2693900 0 0 21648 863 20978 402253;402254;402255;402256;402257;402258;402259;402260;402261;402262;402263;402264;402265;402266;402267;402268;402269;402270;402271 246607;246608;246609;246610;246611;246612;246613;246614;246615;246616;246617;246618;246619;246620;246621;246622 246611 16 VIVVTDGER Unmodified 986.53966 0.53965977 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.457 17.897 2 4.1259E-05 6546 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 151.27 98.586 3528100000 144070000 142420000 140680000 1245300 0 1411000 282690000 321830000 277430000 1050600 1090000 1195600 324580000 317300000 307810000 895820 423790 0 470460000 417830000 369970000 1252600 1233700 1271000 21649 1283 20979 402272;402273;402274;402275;402276;402277;402278;402279;402280;402281;402282;402283;402284;402285;402286;402287;402288;402289;402290;402291;402292;402293 246623;246624;246625;246626;246627;246628;246629;246630;246631;246632;246633;246634 246625 12 VIWSACTVNCGSR Unmodified 1508.6864 0.68641714 1152 P18775 dmsA Dimethyl sulfoxide reductase DmsA yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 28.032 26.016 2 0.01763 9543 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 54.784 48.4 7177800 0 0 0 0 0 0 0 0 0 2382500 2329700 2465500 0 0 0 0 0 0 0 0 0 0 0 0 21650 1152 20980 402294;402295;402296 246635;246636 246636 1 VIYLSPQGR Unmodified 1031.5764 0.57637963 403 P0A873 trmD tRNA (guanine-N(1)-)-methyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.409 22.688 2 0.00078595 9932 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.28 94.46 234730000 23395000 21139000 19146000 0 0 0 11120000 11819000 10475000 0 0 0 16641000 21283000 14402000 0 0 0 26366000 29695000 29253000 0 0 0 21651 403 20981 402297;402298;402299;402300;402301;402302;402303;402304;402305;402306;402307;402308 246637;246638;246639;246640;246641;246642;246643 246640 6 VIYQAGFTDR Unmodified 1168.5877 0.58767259 519 P0A9H1 mug G/U mismatch-specific DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.746 23.745 2 1.0162E-05 10075 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 180.45 176.52 410910000 72213000 59801000 59794000 0 934990 1191200 42936000 41787000 39649000 0 0 0 14791000 13418000 10013000 0 0 0 19147000 17370000 17860000 0 0 0 21652 519 20982 402309;402310;402311;402312;402313;402314;402315;402316;402317;402318;402319;402320;402321;402322 246644;246645;246646;246647;246648;246649;246650;246651;246652;246653 246652 10 VIYQDPR Unmodified 889.46577 0.46576654 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 14.247 15.024 2 0.051776 4901 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 62.714 47.333 171240000 3778300 0 4450000 0 0 0 18334000 19930000 18460000 0 0 0 13122000 11017000 10318000 0 0 0 21975000 23089000 26762000 0 0 0 21653 1371 20983 402323;402324;402325;402326;402327;402328;402329;402330;402331;402332;402333 246654;246655;246656 246654 3 VIYSTYESNETMYAK Unmodified 1797.8131 0.81311702 951 P0AFK9 potD Spermidine/putrescine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 28.163 26.988 2 3.9046E-20 12417 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 210.87 210.3 371070000 41700000 33180000 31198000 0 0 0 13748000 14514000 15483000 0 0 0 40294000 40055000 43330000 0 0 0 33502000 32469000 31600000 0 0 0 21654 951 20984 402334;402335;402336;402337;402338;402339;402340;402341;402342;402343;402344;402345;402346 246657;246658;246659;246660;246661;246662;246663;246664;246665;246666;246667;246668 246660 12 VIYVPGK Unmodified 774.46398 0.46397563 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.012 19.379 2 0.016802 7303 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 80.377 71.364 1413000000 116190000 112050000 86344000 839850 0 0 147590000 124750000 122000000 0 756410 0 98162000 100460000 96473000 1264800 688380 974680 139930000 141570000 121390000 1044200 541820 0 21655 170 20985 402347;402348;402349;402350;402351;402352;402353;402354;402355;402356;402357;402358;402359;402360;402361;402362;402363;402364;402365 246669;246670;246671;246672;246673;246674;246675;246676;246677;246678;246679;246680 246672 12 VIYWQMTGDK Unmodified 1239.5958 0.59579444 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.24 32.492 2 0.00042077 15674 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 104.2 83.575 123880000 0 0 0 688380 1148600 792220 10127000 10118000 9847000 5956800 6937100 7275500 6752900 6166400 5876500 0 0 0 13533000 14807000 12519000 2591600 3793500 4948200 21656 143 20986 402366;402367;402368;402369;402370;402371;402372;402373;402374;402375;402376;402377;402378;402379;402380;402381;402382;402383 246681;246682;246683;246684;246685;246686;246687 246685 6 VKAALELAEQR Unmodified 1226.6983 0.69828568 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 2 2 1 1 1 1 2 1 2 17.972 18.214 2;3 0.00044844 4905 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 68.536 45.16 72754000 0 0 0 9321600 9441700 7955000 0 3336900 3403300 5260800 4202000 2280100 0 0 0 3077800 4344600 6244700 0 0 0 5040100 3245100 5600800 21657 375 20987 402384;402385;402386;402387;402388;402389;402390;402391;402392;402393;402394;402395;402396;402397;402398;402399;402400;402401;402402;402403;402404 246688;246689;246690;246691;246692;246693;246694 246691 7 VKAEMENLR Unmodified 1088.5648 0.56482866 211 P09372 grpE Protein GrpE yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 12.748 13.447 2;3 0.00056246 3705 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 80.688 55.129 735010000 30672000 33891000 35645000 9022800 8204400 8919100 53231000 47103000 54247000 69026000 47737000 49001000 36106000 28723000 42252000 0 0 0 47925000 50928000 48120000 14407000 13369000 6478900 21658 211 20988 402405;402406;402407;402408;402409;402410;402411;402412;402413;402414;402415;402416;402417;402418;402419;402420;402421;402422;402423;402424;402425;402426;402427;402428;402429;402430;402431;402432;402433;402434;402435;402436;402437;402438;402439;402440;402441;402442;402443;402444;402445 246695;246696;246697;246698;246699;246700;246701;246702;246703;246704;246705;246706;246707;246708;246709;246710;246711 246711 17 VKAEMENLRR Unmodified 1244.6659 0.66593969 211 P09372 grpE Protein GrpE yes yes 0 0 2 By matching By MS/MS 1 1 11.7 12.355 2 0.12947 2753 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 56.81 33.382 8069800 0 0 0 0 0 2207000 0 0 0 0 0 5862900 0 0 0 0 0 0 0 0 0 0 0 0 21659 211 20989 402446;402447 246712 246712 1 VKAEPDFGVK Unmodified 1088.5866 0.58660996 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 15.421 16.265 2 0.0047893 5281 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 76.943 55.971 87893000 0 0 0 0 0 0 12616000 10248000 8449100 0 0 0 10974000 10263000 10107000 0 0 0 8442000 7489800 9304600 0 0 0 21660 1947 20990 402448;402449;402450;402451;402452;402453;402454;402455;402456 246713;246714;246715 246713 3 VKAPVIVQFSNGGASFIAGK Unmodified 1989.1047 0.10474643 634 P0AB71 fbaA Fructose-bisphosphate aldolase class 2 yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 39.836 38.209 2;3 0.00011367 18546 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 67.396 67.221 571230000 38596000 33312000 32868000 3589800 5335600 3884900 68791000 65102000 65560000 4216600 2319300 2120100 31441000 29080000 30538000 4246700 2079700 2325600 51918000 43925000 46086000 2012500 1889500 0 21661 634 20991 402457;402458;402459;402460;402461;402462;402463;402464;402465;402466;402467;402468;402469;402470;402471;402472;402473;402474;402475;402476;402477;402478;402479;402480;402481;402482;402483;402484;402485;402486;402487;402488;402489;402490;402491 246716;246717;246718;246719;246720;246721;246722 246719 7 VKAQDVQR Unmodified 942.52468 0.52467841 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 1 By MS/MS By matching 1 1 4.9055 5.9842 2 0.099918 952 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 58.119 44.472 5851300 0 0 0 0 3715600 2135600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21662 1726 20992 402492;402493 246723 246723 1 VKDDLQELAVVESFPTK Unmodified 1917.0095 0.0095086389 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 41.537 39.726 2;3 1.5655E-39 19453 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 311.26 301.03 3097400000 609940000 527370000 544940000 4972600 5382200 4565000 118660000 120370000 114890000 28566000 25018000 23333000 157440000 137140000 170080000 7503200 0 0 155960000 158640000 154620000 8970000 9056700 9998300 21663 298 20993 402494;402495;402496;402497;402498;402499;402500;402501;402502;402503;402504;402505;402506;402507;402508;402509;402510;402511;402512;402513;402514;402515;402516;402517;402518;402519;402520;402521;402522;402523;402524;402525;402526;402527;402528;402529;402530;402531;402532 246724;246725;246726;246727;246728;246729;246730;246731;246732;246733;246734;246735;246736;246737;246738;246739;246740;246741;246742;246743;246744;246745;246746;246747;246748;246749;246750;246751;246752;246753;246754;246755;246756;246757;246758;246759;246760 246749 35 VKDDLQELAVVESFPTKIEGR Unmodified 2372.2587 0.25874047 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 43.022 41.341 4 0.001813 14621 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 59.469 59.059 95492000 0 0 0 5202100 6163600 5377100 0 0 0 14352000 15031000 12771000 0 0 0 0 10013000 6931700 0 0 0 5668000 7583600 6397900 21664 298 20994 402533;402534;402535;402536;402537;402538;402539;402540;402541;402542;402543 246761;246762;246763 246763 3 VKDSLKDSFDDSSANLFK Unmodified 2014.9848 0.98475045 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 2 1 2 2 2 2 2 2 2 2 1 30.67 29.262 3;4 1.0099E-05 11190 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 70.335 70.176 77037000 0 0 0 3296000 6228500 3454500 0 0 0 15362000 16582000 12102000 0 0 0 2846200 2435500 2939400 0 0 0 4872800 4883400 2033800 21665 33 20995 402544;402545;402546;402547;402548;402549;402550;402551;402552;402553;402554;402555;402556;402557;402558;402559;402560;402561;402562;402563;402564 246764;246765;246766;246767;246768;246769;246770 246765 7 VKEEDDIEAATR Unmodified 1374.6627 0.66268803 33 P00550 mtlA PTS system mannitol-specific EIICBA component;Mannitol permease IIC component;Mannitol-specific phosphotransferase enzyme IIB component;Mannitol-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 13.806 14.223 2 0.00011583 3606 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 103.22 92.697 28950000 5385500 3616000 5109800 0 0 0 0 0 0 4198300 4198500 4484000 0 0 0 0 0 0 0 0 0 1957500 0 0 21666 33 20996 402565;402566;402567;402568;402569;402570;402571 246771;246772;246773 246773 3 VKEGDPNLGVIAETLTEHGTR Unmodified 2235.1495 0.14952437 90 P04425 gshB Glutathione synthetase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 36.73 35.134 3;4 4.3714E-05 17010 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 82.99 82.612 427530000 58701000 37590000 34794000 0 0 0 16177000 19342000 19886000 0 0 0 33206000 28700000 35463000 0 0 0 43461000 39691000 60518000 0 0 0 21667 90 20997 402572;402573;402574;402575;402576;402577;402578;402579;402580;402581;402582;402583;402584;402585;402586;402587;402588;402589;402590;402591;402592 246774;246775;246776;246777;246778;246779;246780;246781;246782;246783 246775 10 VKEQWGK Unmodified 873.47085 0.47085192 1720 P68206 yjbJ UPF0337 protein YjbJ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.802 11.618 2 0.0029824 2851 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.89 91.149 1806900000 453170000 335530000 395600000 0 0 0 169060000 151440000 158250000 0 0 0 22697000 23576000 20114000 0 0 0 38667000 6353300 32499000 0 0 0 21668 1720 20998 402593;402594;402595;402596;402597;402598;402599;402600;402601;402602;402603;402604 246784;246785;246786;246787;246788;246789 246789 6 VKESLEQRPDVEQADVSITEAHVTGTASAEQLIETIK Unmodified 4021.0491 0.049148207 1980 Q59385 copA Copper-exporting P-type ATPase A yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 42.073 40.183 4;5 3.3421E-47 19998 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 203.77 201.72 723250000 49337000 66523000 51450000 5511700 6401200 6798800 110290000 113460000 89204000 17915000 20138000 17866000 26930000 18862000 15848000 0 0 0 30826000 31578000 34199000 4094500 2371600 3646800 21669 1980 20999 402605;402606;402607;402608;402609;402610;402611;402612;402613;402614;402615;402616;402617;402618;402619;402620;402621;402622;402623;402624;402625;402626;402627;402628;402629;402630;402631;402632;402633;402634;402635;402636;402637;402638;402639;402640;402641 246790;246791;246792;246793;246794;246795;246796;246797;246798;246799;246800;246801;246802;246803;246804;246805;246806;246807;246808;246809;246810 246797 21 VKEVVDFCHR Unmodified 1287.6394 0.63939059 1045 P0C8J6 gatY D-tagatose-1,6-bisphosphate aldolase subunit GatY yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 2 1 1 1 2 2 2 1 1 1 1 1 1 1 14.251 14.916 2;3 2.2868E-06 4431 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 166.16 154.31 444290000 0 16981000 13849000 27276000 21985000 36804000 36764000 45031000 44519000 38418000 28343000 36461000 15206000 15601000 13451000 0 0 0 15743000 18221000 18030000 1605100 0 0 21670 1045 21000 402642;402643;402644;402645;402646;402647;402648;402649;402650;402651;402652;402653;402654;402655;402656;402657;402658;402659;402660;402661;402662;402663;402664;402665 246811;246812;246813;246814;246815;246816;246817;246818;246819;246820;246821;246822;246823;246824;246825;246826;246827;246828;246829;246830 246830 20 VKFDELSLK Unmodified 1077.607 0.60701105 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 27.238 25.965 2;3 0.011548 11298 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 61.765 38.445 364390000 35389000 33838000 31038000 0 693630 1893900 27743000 24087000 24858000 2968400 1979500 2105700 21455000 19724000 22875000 0 618370 751930 40052000 36611000 32246000 926420 1660500 878380 21671 1221 21001 402666;402667;402668;402669;402670;402671;402672;402673;402674;402675;402676;402677;402678;402679;402680;402681;402682;402683;402684;402685;402686;402687;402688;402689;402690;402691;402692;402693;402694;402695;402696;402697;402698;402699;402700;402701;402702;402703 246831;246832;246833;246834;246835;246836;246837;246838 246836 8 VKGDWLVAMPQGLDAR Unmodified 1754.9138 0.91377454 1284 P26646 acuI Probable acrylyl-CoA reductase AcuI yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 1 2 2 2 1 41.06 39.327 2;3 0.0027508 19652 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 60.093 49.305 252960000 5749900 3680900 5135700 0 0 0 58576000 47451000 48876000 0 0 0 1700500 2834100 19267000 0 0 0 21322000 20886000 17477000 0 0 0 21672 1284 21002 402704;402705;402706;402707;402708;402709;402710;402711;402712;402713;402714;402715;402716;402717;402718;402719;402720;402721 246839;246840;246841;246842;246843 246839 4 VKGEWDK Unmodified 860.43922 0.43921744 884 P0AES9 hdeA Acid stress chaperone HdeA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 10.93 11.448 2 0.003311 2824 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.52 65.006 5359300000 1809900000 1712500000 1773800000 0 0 0 53414000 0 0 4883700 0 4804500 0 0 0 0 0 0 0 0 0 0 0 0 21673 884 21003 402722;402723;402724;402725;402726;402727 246844;246845;246846;246847 246845 4 VKGGFTVELNGIR Unmodified 1388.7776 0.77759863 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 29.776 27.959 3 0.0034782 9362 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 63.76 61.927 81921000 0 0 0 8172500 9362100 9133900 0 0 0 8523400 9259500 6571700 0 0 0 0 0 0 0 0 0 9517800 10022000 11358000 21674 990 21004 402728;402729;402730;402731;402732;402733;402734;402735;402736 246848;246849;246850 246850 0 VKGLIEEMASAYEDPKEVIEFYSK Unmodified 2774.3724 0.3724496 396 P0A850 tig Trigger factor yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 51.568 50.73 4 0.025525 20180 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 40.756 37.927 59389000 0 0 0 0 0 0 0 0 0 10166000 0 5251200 0 0 0 13167000 9059900 9221500 0 0 0 6463200 6060400 0 21675 396 21005 402737;402738;402739;402740;402741;402742;402743 246851;246852 246852 2 VKGTGRK Unmodified 744.46062 0.46062159 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 7.8432 8.0325 2 0.1177 1231 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 68.485 23.764 163150000 0 0 0 0 0 0 0 0 0 4056700 4151800 4238200 0 0 0 1854000 2647200 1918500 0 0 0 46759000 47510000 50016000 21676 133 21006 402744;402745;402746;402747;402748;402749;402750;402751;402752 246853;246854 246854 2 VKHPSEIVNVGDEITVK Unmodified 1863.0102 0.010177341 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 3 3 3 3 3 23.904 23.036 2;3;4 1.8176E-18 10121 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 225.85 220.95 6190500000 714190000 638730000 468820000 70351000 64870000 83719000 356650000 389720000 386150000 110970000 102020000 110480000 313770000 304630000 326350000 68728000 39245000 38666000 451390000 447210000 483610000 66320000 80044000 73905000 21677 990 21007 402753;402754;402755;402756;402757;402758;402759;402760;402761;402762;402763;402764;402765;402766;402767;402768;402769;402770;402771;402772;402773;402774;402775;402776;402777;402778;402779;402780;402781;402782;402783;402784;402785;402786;402787;402788;402789;402790;402791;402792;402793;402794;402795;402796;402797;402798;402799;402800;402801;402802;402803;402804;402805;402806;402807;402808;402809;402810;402811;402812;402813;402814;402815;402816;402817;402818;402819;402820;402821;402822;402823;402824 246855;246856;246857;246858;246859;246860;246861;246862;246863;246864;246865;246866;246867;246868;246869;246870;246871;246872;246873;246874;246875;246876;246877;246878;246879;246880;246881;246882;246883;246884;246885;246886;246887;246888;246889;246890;246891;246892;246893;246894;246895;246896;246897;246898;246899;246900;246901;246902;246903;246904;246905;246906;246907;246908;246909;246910;246911;246912;246913;246914;246915;246916;246917;246918;246919;246920;246921;246922 246888 67 VKLDEAGVR Unmodified 985.55564 0.55564418 1013 P0AGE9 sucD Succinyl-CoA ligase [ADP-forming] subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 12.931 13.7 2 1.906E-06 4121 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 178.99 147.05 1125900000 131650000 122800000 129990000 1541000 1221700 1902000 39618000 46074000 44296000 0 1591600 1609100 66191000 55102000 44099000 0 0 0 162590000 146870000 126430000 0 1320100 969640 21678 1013 21008 402825;402826;402827;402828;402829;402830;402831;402832;402833;402834;402835;402836;402837;402838;402839;402840;402841;402842;402843;402844 246923;246924;246925;246926;246927;246928;246929;246930 246924 8 VKLEQIAADIK Unmodified 1226.7234 0.72343779 688 P0ABZ6 surA Chaperone SurA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.4 26.253 2;3 3.7787E-07 12388 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.64 138.26 1682200000 155570000 165980000 136670000 0 0 0 158990000 133790000 151110000 0 0 0 96251000 110010000 101630000 0 0 0 170110000 158810000 143290000 0 0 0 21679 688 21009 402845;402846;402847;402848;402849;402850;402851;402852;402853;402854;402855;402856;402857;402858;402859;402860;402861;402862;402863;402864;402865;402866;402867;402868 246931;246932;246933;246934;246935;246936;246937;246938;246939;246940;246941;246942;246943;246944;246945;246946;246947;246948;246949;246950;246951;246952;246953 246932 23 VKLPLTLDPVR Unmodified 1249.7758 0.77580772 625 P0AB28 yceD Uncharacterized protein YceD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.939 33.45 3 0.00012688 15920 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 96.229 94.004 201510000 34802000 33469000 21521000 894680 1033200 900160 14524000 10762000 11903000 0 0 0 8921900 10307000 9359200 0 0 0 13963000 14574000 14574000 0 0 0 21680 625 21010 402869;402870;402871;402872;402873;402874;402875;402876;402877;402878;402879;402880;402881;402882;402883 246954;246955;246956;246957;246958;246959;246960;246961;246962;246963 246959 10 VKNELSQYGILPEEWGGESQFVHVSAK Unmodified 3030.5087 0.50870058 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 2 1 2 2 2 2 1 1 1 1 1 2 2 1 1 1 1 43.48 41.88 3;4 4.5675E-11 20509 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.25 124.06 856850000 150580000 114480000 97645000 5115000 6166700 0 35087000 59080000 9428900 38191000 37972000 32675000 51377000 7900800 8384200 18896000 14617000 13047000 54584000 67406000 8241700 8735900 9564700 7676400 21681 297 21011 402884;402885;402886;402887;402888;402889;402890;402891;402892;402893;402894;402895;402896;402897;402898;402899;402900;402901;402902;402903;402904;402905;402906;402907;402908;402909;402910;402911;402912;402913;402914;402915;402916;402917 246964;246965;246966;246967;246968;246969;246970;246971;246972;246973;246974;246975;246976;246977;246978;246979;246980;246981;246982;246983;246984 246976 21 VKNPDFFK Unmodified 993.52837 0.5283668 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.185 17.892 2 0.0047681 6519 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.798 81.644 207360000 12013000 11517000 15215000 0 0 0 38181000 42241000 38149000 0 0 0 7717600 8075900 6754700 0 0 0 10460000 8596200 8444400 0 0 0 21682 522 21012 402918;402919;402920;402921;402922;402923;402924;402925;402926;402927;402928;402929 246985;246986;246987;246988;246989;246990;246991 246987 7 VKNPGLWELPFGTTAR Unmodified 1784.9574 0.95735391 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 42.821 41.176 2;3 2.1451E-08 14167 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 80.719 76.476 727890000 26592000 24655000 24433000 33417000 2447300 2527400 52672000 46020000 42747000 54810000 55712000 3042600 35927000 31339000 35402000 19053000 15771000 13876000 65635000 63824000 70935000 3541800 0 3514300 21683 1383 21013 402930;402931;402932;402933;402934;402935;402936;402937;402938;402939;402940;402941;402942;402943;402944;402945;402946;402947;402948;402949;402950;402951;402952;402953;402954;402955;402956;402957;402958;402959;402960;402961;402962;402963;402964;402965;402966;402967;402968 246992;246993;246994;246995;246996;246997;246998;246999;247000;247001;247002;247003;247004;247005;247006;247007;247008;247009;247010 246994 16 VKNPNTGK Unmodified 856.47667 0.47666558 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4.6891 5.5859 2 0.00040566 890 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 150.84 83.843 4448900000 891770000 766510000 766110000 1140500 1308600 1187100 68527000 92382000 91721000 0 0 0 205320000 239050000 199430000 0 0 0 395740000 376530000 352140000 0 0 0 21684 179 21014 402969;402970;402971;402972;402973;402974;402975;402976;402977;402978;402979;402980;402981;402982;402983 247011;247012;247013;247014;247015;247016;247017;247018;247019;247020;247021;247022 247015 12 VKNVLSSGK Unmodified 930.54983 0.54983053 1625 P60624 rplX 50S ribosomal protein L24 yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.428 11.808 2 0.00016862 2442 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 136.75 113.23 152520000 0 0 0 8116600 11679000 9458800 0 0 0 17395000 14792000 15958000 0 0 0 13697000 6357500 5349600 0 0 0 18210000 17498000 14009000 21685 1625 21015 402984;402985;402986;402987;402988;402989;402990;402991;402992;402993;402994;402995 247023;247024;247025;247026;247027;247028;247029;247030;247031;247032 247029 10 VKNWLER Unmodified 943.52395 0.52395013 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 16.469 17.061 2 0.033644 4332 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 77.674 55.57 15072000 0 0 0 4283000 4233800 3610500 0 0 0 1749000 0 0 0 0 0 0 0 0 0 0 0 0 0 1195900 21686 1899 21016 402996;402997;402998;402999;403000 247033;247034;247035 247035 3 VKPESLPAFISQWEYR Unmodified 1949.0047 0.0046980325 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.016 46.49 3 0.0019308 18572 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 62.165 52.244 61191000 0 6836900 3955500 0 0 0 6169900 4955700 5568900 4133300 4335300 4244900 2850400 3641300 2185500 0 0 0 4924500 4216600 3172800 0 0 0 21687 1877 21017 403001;403002;403003;403004;403005;403006;403007;403008;403009;403010;403011;403012;403013;403014 247036 247036 1 VKPFIEHCALAPLPGEGSFAGSILSHDFVEAALMR Unmodified 3765.9011 0.90110794 1645 P62517 mdoH Glucans biosynthesis glucosyltransferase H yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.568 51.264 5 0.0018452 24065 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 47.191 45.736 96347000 0 0 6917400 3324700 0 0 10771000 8009100 7330900 0 4528600 0 11079000 12565000 7157400 0 0 0 0 0 16628000 3595800 4440700 0 21688 1645 21018 403015;403016;403017;403018;403019;403020;403021;403022;403023;403024;403025;403026 247037 247037 1 VKPGSLGHR Unmodified 949.54575 0.5457482 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 8.1878 9.0517 2 0.001547 2333 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.457 74.934 1287100000 103350000 68978000 52632000 0 1271700 0 225230000 225330000 207430000 0 0 0 54894000 61313000 40248000 0 0 0 80025000 87173000 79257000 0 0 0 21689 256 21019 403027;403028;403029;403030;403031;403032;403033;403034;403035;403036;403037;403038;403039;403040 247038;247039;247040;247041;247042;247043;247044;247045;247046;247047;247048;247049;247050;247051 247046 14 VKPIRDEDGLAIDFEIEGEYPQFGNNDPR Unmodified 3332.5949 0.5949494 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1 1 5 2 2 1 1 2 1 2 1 2 3 3 1 45.692 44.198 3;4 3.3602E-16 21556 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.03 141.41 2598400000 57262000 44590000 25005000 4075400 4201600 3640800 937640000 507760000 586770000 13845000 13069000 0 64711000 52402000 60966000 0 0 4793800 49822000 84898000 74344000 0 8583700 0 21690 212 21020 403041;403042;403043;403044;403045;403046;403047;403048;403049;403050;403051;403052;403053;403054;403055;403056;403057;403058;403059;403060;403061;403062;403063;403064;403065;403066;403067;403068;403069;403070;403071;403072;403073;403074;403075;403076;403077;403078 247052;247053;247054;247055;247056;247057;247058;247059;247060;247061;247062;247063;247064;247065;247066;247067;247068;247069;247070;247071;247072;247073;247074;247075;247076;247077;247078;247079;247080;247081;247082;247083;247084;247085;247086;247087;247088;247089;247090;247091;247092 247062 41 VKPITLR Unmodified 825.54362 0.54362294 1039 P0C0L7 proP Proline/betaine transporter yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.359 14.034 2 0.011508 4171 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 94.539 63.481 331510000 16588000 13857000 16471000 6136600 4402700 7167300 28250000 27600000 25968000 15873000 11507000 13902000 19441000 21776000 19743000 6815700 0 0 22765000 19751000 22696000 5017000 0 5785200 21691 1039 21021 403079;403080;403081;403082;403083;403084;403085;403086;403087;403088;403089;403090;403091;403092;403093;403094;403095;403096;403097;403098;403099 247093;247094;247095;247096;247097;247098;247099;247100 247096 8 VKPNQQVTIIDSEGK Unmodified 1654.889 0.88899957 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 17.202 17.745 2;3 1.2743E-27 6406 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 246.51 237.4 5818000000 350050000 335010000 315570000 8491200 7740600 3904200 587670000 528190000 531950000 7099700 8241000 6274600 477590000 446470000 433140000 0 6262900 6003400 631680000 581350000 529790000 6833300 3938500 4721500 21692 1388 21022 403100;403101;403102;403103;403104;403105;403106;403107;403108;403109;403110;403111;403112;403113;403114;403115;403116;403117;403118;403119;403120;403121;403122;403123;403124;403125;403126;403127;403128;403129;403130;403131;403132;403133;403134;403135;403136;403137;403138;403139;403140;403141;403142 247101;247102;247103;247104;247105;247106;247107;247108;247109;247110;247111;247112;247113;247114;247115;247116;247117;247118;247119;247120;247121;247122;247123;247124;247125;247126;247127;247128;247129;247130;247131;247132;247133;247134;247135 247115 35 VKPQVYAGLFPVSSDDYEAFR Unmodified 2387.1798 0.17976186 1633 P60785 lepA Elongation factor 4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.049 44.743 3 2.548E-10 17674 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 88.176 85.294 1655800000 155930000 137420000 123570000 6580400 6088000 5965700 97410000 76867000 82837000 0 0 0 72777000 63541000 66335000 90297000 67453000 63330000 121420000 141440000 112060000 56960000 51287000 56261000 21693 1633 21023 403143;403144;403145;403146;403147;403148;403149;403150;403151;403152;403153;403154;403155;403156;403157;403158;403159;403160;403161;403162;403163 247136;247137;247138;247139;247140;247141;247142;247143;247144;247145;247146;247147;247148;247149;247150;247151;247152;247153 247144 18 VKPQVYAGLFPVSSDDYEAFRDALGK Unmodified 2871.4443 0.44430941 1633 P60785 lepA Elongation factor 4 yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 1 1 1 1 1 48.999 48.016 3;4 5.8963E-07 17321 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 97.068 94.985 310600000 0 0 0 6194500 5851900 5116300 0 0 0 8849700 7737400 8601600 0 0 0 47652000 41065000 44387000 0 0 0 47423000 45030000 42689000 21694 1633 21024 403164;403165;403166;403167;403168;403169;403170;403171;403172;403173;403174;403175;403176 247154;247155;247156;247157;247158;247159 247157 6 VKTGSLIMIFEVEGAAPAAAPAK Unmodified 2270.2344 0.23443997 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 47.549 45.982 3 7.9783E-05 18236 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 82.477 81.873 55154000 0 0 0 11616000 11124000 9119600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7911500 8358100 7025200 21695 133 21025 403177;403178;403179;403180;403181;403182 247160;247161;247162;247163;247164;247165 247160 6 VKTGSLIMIFEVEGAAPAAAPAKQEAAAPAPAAK Unmodified 3275.7588 0.75878403 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 42.32 40.437 3;4 1.2825E-07 14318 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 81.068 76.788 141960000 0 0 0 27090000 31414000 28567000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23337000 18280000 13269000 21696 133 21026 403183;403184;403185;403186;403187;403188;403189;403190;403191 247166;247167;247168;247169;247170;247171;247172;247173;247174 247170 9 VKVEHADEYDLWGSR Unmodified 1802.8588 0.85876208 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.78 23.668 4 0.025626 10540 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 42.314 41.169 83839000 7727800 0 4917500 0 0 0 6319500 8375000 3204600 1053500 0 527160 4927800 5578400 4671700 0 0 0 12225000 13775000 10536000 0 0 0 21697 863 21027 403192;403193;403194;403195;403196;403197;403198;403199;403200;403201;403202;403203;403204 247175;247176 247175 2 VKVGDTVIEFDLPLLEEK Unmodified 2043.114 0.11397371 1741 P69783 crr Glucose-specific phosphotransferase enzyme IIA component yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.468 52.271 3 2.3533E-07 20401 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 108.75 106.12 156180000 7729600 10181000 7084600 0 0 0 3521400 5567200 5922300 8189400 5316600 3836200 8149200 5728400 8383900 15430000 14269000 23405000 7520200 10281000 5668800 0 0 0 21698 1741 21028 403205;403206;403207;403208;403209;403210;403211;403212;403213;403214;403215;403216;403217;403218;403219;403220;403221;403222 247177;247178;247179;247180;247181;247182 247177 3 VKVVNGLGK Unmodified 912.57565 0.57565135 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.819 13.256 2 0.00046595 2772 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 120.49 98.357 930920000 0 0 0 200760000 168120000 177890000 0 0 0 11789000 10795000 7488700 0 0 0 5528600 0 2827900 0 0 0 122730000 121000000 101990000 21699 542 21029 403223;403224;403225;403226;403227;403228;403229;403230;403231;403232;403233 247183;247184;247185;247186;247187;247188;247189;247190;247191;247192 247191 10 VLAAFELGDHEPDFETR Unmodified 1944.9218 0.92175626 98 P04968 ilvA L-threonine dehydratase biosynthetic IlvA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 40.505 38.848 3 1.0802E-10 18882 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.31 114.92 151700000 32453000 29799000 26727000 0 0 0 9313900 7279200 8539600 0 0 0 7265500 6049600 5871800 0 0 0 0 10281000 8116800 0 0 0 21700 98 21030 403234;403235;403236;403237;403238;403239;403240;403241;403242;403243;403244 247193;247194;247195;247196 247195 3 VLAAIDAR Unmodified 827.4865 0.48650199 1844 P76256 tsaB tRNA threonylcarbamoyladenosine biosynthesis protein TsaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.158 19.526 2 0.00067698 7411 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.84 101.73 516130000 32557000 29033000 24834000 0 0 0 44522000 46391000 40525000 1505500 0 1895700 43455000 39262000 38214000 821150 448660 656410 57740000 57057000 57209000 0 0 0 21701 1844 21031 403245;403246;403247;403248;403249;403250;403251;403252;403253;403254;403255;403256;403257;403258;403259;403260;403261 247197;247198;247199;247200;247201;247202 247200 6 VLAAIDTLQSWVMK Unmodified 1573.8538 0.85380004 1913 P77529 ydjN Uncharacterized symporter YdjN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 2 2 1 1 1 1 1 1 1 1 1 2 53.992 52.75 2 4.1072E-11 26143 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 136.02 111.64 164280000 11887000 15384000 13195000 0 0 0 0 10966000 0 6580800 0 3536100 22290000 24361000 22504000 1442000 0 1111200 6546800 24477000 0 0 0 0 21702 1913 21032 403262;403263;403264;403265;403266;403267;403268;403269;403270;403271;403272;403273;403274;403275;403276;403277;403278;403279 247203;247204;247205;247206;247207;247208;247209;247210;247211 247203 9 VLAAKPAIIALQIVR Unmodified 1575.0236 0.023582981 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 1 By MS/MS 1 43.325 40.422 3 0.055585 16491 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 42.317 42.317 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21703 1507 21033 403280 247212 247212 1 VLAASFK Unmodified 734.43268 0.4326755 1946 P78055 fsaA Fructose-6-phosphate aldolase 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.259 18.716 2 0.083118 7043 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 55.504 37.126 71837000 4418000 5197700 0 1060000 846630 965860 11864000 14803000 0 1017900 0 0 5516800 4837100 5211300 0 0 0 5118900 5501000 3897600 510320 458420 612840 21704 1946 21034 403281;403282;403283;403284;403285;403286;403287;403288;403289;403290;403291;403292;403293;403294;403295;403296;403297;403298 247213;247214;247215 247214 3 VLADGQFYR Unmodified 1067.54 0.53999412 925 P0AFB8 glnG Nitrogen regulation protein NR(I) yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 24.974 24.06 2 0.15493 10522 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 51.736 38.017 41399000 6931900 6224900 8016500 0 0 0 0 5595400 0 0 0 0 4666400 0 2004900 0 0 0 4975300 0 2983100 0 0 0 21705 925 21035 403299;403300;403301;403302;403303;403304;403305;403306 247216 247216 0 VLAEGNADEKLDPASLTK Unmodified 1869.9684 0.96837211 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.554 26.349 3 5.0482E-05 8792 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 79.545 77.748 156340000 0 0 0 5961600 7601500 0 7737000 6351400 8282000 22903000 20007000 19315000 6221600 3068300 3722500 3240000 1909500 3823700 6930600 6052300 7839000 0 8786800 6592800 21706 189 21036 403307;403308;403309;403310;403311;403312;403313;403314;403315;403316;403317;403318;403319;403320;403321;403322;403323;403324;403325 247217;247218;247219;247220;247221;247222;247223 247222 7 VLAEQALAQPTTDELMTLVNK Unmodified 2284.1984 0.1984484 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 1 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 52.176 51.019 2;3 3.7213E-15 24809 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 194.23 186.8 12076000000 559610000 543090000 535850000 3524100 9561000 7229400 1115300000 1091300000 1123100000 0 13900000 11495000 1009900000 1198400000 1310600000 7846700 7267900 7804200 1228400000 1186700000 1089700000 7450700 7849800 0 21707 192 21037 403326;403327;403328;403329;403330;403331;403332;403333;403334;403335;403336;403337;403338;403339;403340;403341;403342;403343;403344;403345;403346;403347;403348;403349;403350;403351;403352;403353;403354;403355;403356;403357;403358;403359;403360 247224;247225;247226;247227;247228;247229;247230;247231;247232;247233;247234;247235;247236;247237;247238;247239;247240;247241;247242 247232 18 VLAEQALAQPTTDELMTLVNK Oxidation (M) 2300.1934 0.19336302 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 47.427 45.99 3 0.0052091 21675 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 45.395 42.342 90094000 7124300 4384700 4143400 0 0 0 12913000 15350000 10974000 0 0 0 11933000 0 0 0 0 0 11579000 0 11693000 0 0 0 21708 192 21037 403361;403362;403363;403364;403365;403366;403367;403368;403369 247243 247243 60 1 VLAEQNADVR Unmodified 1113.5778 0.57783619 844 P0AEB2 dacA D-alanyl-D-alanine carboxypeptidase DacA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.64 14.197 2 4.2475E-05 3675 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 156.01 131.85 471730000 0 0 13475000 6655200 7308100 7566100 37521000 37297000 32769000 25268000 22267000 22733000 26786000 23945000 0 8327700 6721600 8135900 44471000 41902000 42245000 21052000 16573000 18715000 21709 844 21038 403370;403371;403372;403373;403374;403375;403376;403377;403378;403379;403380;403381;403382;403383;403384;403385;403386;403387;403388;403389;403390 247244;247245;247246;247247;247248;247249;247250;247251;247252;247253;247254;247255;247256;247257;247258;247259;247260;247261 247248 12 VLAGEPR Unmodified 740.41809 0.41808807 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.154 12.787 2 0.0060552 3490 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 97.071 69.754 1714000000 2421900 87923000 68172000 11114000 12962000 14617000 151660000 149070000 142670000 6644700 0 5569900 171610000 166470000 135650000 2590700 1422300 1711200 193830000 183250000 191130000 4731500 4643800 4145300 21710 107 21039 403391;403392;403393;403394;403395;403396;403397;403398;403399;403400;403401;403402;403403;403404;403405;403406;403407;403408;403409;403410;403411;403412;403413;403414 247262;247263;247264;247265;247266;247267;247268;247269;247270;247271;247272;247273;247274;247275;247276;247277;247278;247279;247280 247265 17 VLAITGFTPNALQQR Unmodified 1627.9046 0.90459006 1499 P37767 yfhH Uncharacterized HTH-type transcriptional regulator YfhH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 42.337 42.46 2 1.0711E-08 15104 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 147.37 139.14 21881000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11548000 5136500 5196300 0 0 0 0 0 0 21711 1499 21040 403415;403416;403417 247281;247282;247283 247283 3 VLALAALHHHVDVASEDALVPLASHLDVR Unmodified 3067.6567 0.65670222 247 P0A6I0 cmk Cytidylate kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 1 1 3 3 3 2 2 1 3 3 3 3 3 3 42.721 40.916 4;5;6 3.824E-11 20421 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.08 117.66 2176300000 155540000 125170000 141000000 4164500 3411700 1606500 185640000 204250000 143940000 7183500 8964300 3263000 139730000 152850000 166600000 0 0 0 271550000 214480000 246910000 0 0 0 21712 247 21041 403418;403419;403420;403421;403422;403423;403424;403425;403426;403427;403428;403429;403430;403431;403432;403433;403434;403435;403436;403437;403438;403439;403440;403441;403442;403443;403444;403445;403446;403447;403448;403449;403450;403451;403452;403453;403454;403455;403456;403457;403458;403459;403460;403461;403462 247284;247285;247286;247287;247288;247289;247290;247291;247292;247293;247294;247295;247296;247297;247298;247299;247300 247285 17 VLALDMGALVAGAK Unmodified 1327.7534 0.75335771 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 49.608 48.211 2;3 7.292E-06 23350 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.39 77.562 1752300000 219580000 184890000 176300000 4307200 4772100 3977300 196350000 173800000 183800000 9159100 11236000 7897100 107360000 93896000 95276000 0 0 0 89672000 96251000 93755000 0 0 0 21713 1662 21042 403463;403464;403465;403466;403467;403468;403469;403470;403471;403472;403473;403474;403475;403476;403477;403478;403479;403480;403481;403482;403483;403484;403485;403486;403487;403488;403489;403490;403491;403492;403493;403494;403495;403496 247301;247302;247303;247304;247305;247306;247307;247308;247309;247310;247311;247312;247313;247314;247315;247316;247317;247318;247319;247320;247321;247322;247323;247324;247325;247326;247327 247321 27 VLALVGGSGSGK Unmodified 1043.5975 0.597509 1425 P33593 nikD Nickel import ATP-binding protein NikD yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 22.355 22.02 2 0.024942 7609 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 57.532 21.137 27281000 0 0 0 0 0 0 0 0 2733200 4878200 4546700 0 0 2642700 0 0 0 0 4011600 3578000 4890800 0 0 0 21714 1425 21043 403497;403498;403499;403500;403501;403502;403503 247328;247329;247330 247328 0 VLANELDALNQTR Unmodified 1455.7682 0.76815616 1190 P21893 recJ Single-stranded-DNA-specific exonuclease RecJ yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 33.692 32.192 2 1.6718E-07 14605 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 175.91 136.76 86244000 0 0 0 0 0 0 13480000 12765000 0 0 0 0 11807000 10714000 11307000 0 0 0 12735000 13438000 0 0 0 0 21715 1190 21044 403504;403505;403506;403507;403508;403509;403510;403511 247331;247332;247333;247334;247335 247335 5 VLAQASTENTVK Unmodified 1259.6721 0.67213051 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.17 14.035 2 3.1877E-08 4239 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 163.64 152.28 530500000 38568000 33625000 33380000 0 0 0 57192000 64939000 41209000 0 0 0 43228000 41612000 37398000 0 0 0 48660000 49237000 41450000 0 0 0 21716 1900 21045 403512;403513;403514;403515;403516;403517;403518;403519;403520;403521;403522;403523 247336;247337;247338;247339;247340;247341;247342;247343;247344;247345;247346 247338 11 VLASLDACR Unmodified 1003.5121 0.51206481 1196 P22333 add Adenosine deaminase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.46 20.68 2 1.7636E-06 6581 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 178.08 154.11 1929500000 90628000 98452000 86967000 3288100 3112200 3165700 184100000 200380000 196160000 20739000 18781000 19530000 170110000 164760000 162060000 0 4381300 4940500 172040000 161850000 161570000 2518400 0 0 21717 1196 21046 403524;403525;403526;403527;403528;403529;403530;403531;403532;403533;403534;403535;403536;403537;403538;403539;403540;403541;403542;403543;403544 247347;247348;247349;247350;247351;247352;247353 247347 7 VLASLDACRR Unmodified 1159.6132 0.61317584 1196 P22333 add Adenosine deaminase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 2 2 2 2 2 1 1 1 1 1 15.274 15.626 2;3 0.00048967 4045 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 73.985 70.982 2089500000 313410000 0 0 3592900 3303700 2769800 326280000 342390000 306230000 24863000 22829000 24758000 0 0 0 6938200 8597400 5688400 381520000 309330000 0 4456200 2535500 0 21718 1196 21047 403545;403546;403547;403548;403549;403550;403551;403552;403553;403554;403555;403556;403557;403558;403559;403560;403561;403562;403563;403564;403565;403566 247354;247355;247356 247355 3 VLATEIAKPSVAAAQYNIAANHIDNVQIIR Unmodified 3202.7462 0.74624551 1203 P23003 trmA tRNA/tmRNA (uracil-C(5))-methyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.098 39.432 4 4.2907E-17 19118 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 153.77 143.25 378360000 38313000 25350000 29303000 0 0 0 30875000 28980000 30920000 0 0 0 20783000 25756000 18790000 0 0 0 36639000 47270000 45380000 0 0 0 21719 1203 21048 403567;403568;403569;403570;403571;403572;403573;403574;403575;403576;403577;403578 247357;247358;247359;247360;247361;247362;247363;247364;247365;247366 247360 10 VLATTDYK Unmodified 909.48075 0.48074791 1846 P76270 msrC Free methionine-R-sulfoxide reductase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.141 14.984 2 0.0071836 4581 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 83.753 68.12 908650000 83499000 96246000 93878000 0 465080 554720 72660000 81140000 72863000 0 0 0 60416000 56567000 57844000 0 0 0 80133000 78285000 74098000 0 0 0 21720 1846 21049 403579;403580;403581;403582;403583;403584;403585;403586;403587;403588;403589;403590;403591;403592 247367;247368;247369 247369 2 VLAVAVYNHYK Unmodified 1275.6976 0.69755739 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 23.319 22.624 2;3 1.321E-06 9991 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 146.54 125.64 287310000 81310000 87323000 78309000 1640400 1335600 0 0 0 0 6544100 5015600 6390000 4622100 0 0 0 2091400 0 3706000 0 4223000 0 1807300 2996200 21721 244 21050 403593;403594;403595;403596;403597;403598;403599;403600;403601;403602;403603;403604;403605;403606;403607;403608;403609;403610;403611;403612;403613;403614 247370;247371;247372;247373;247374;247375;247376;247377;247378;247379;247380;247381 247372 11 VLAVDLFPDQLTVTR Unmodified 1685.9352 0.93522148 1809 P76035 yciW Uncharacterized protein YciW yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.058 51.618 2 0.0060594 25578 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 77.124 68.992 193750000 28860000 21942000 18286000 0 0 0 12246000 12651000 11377000 0 0 0 12747000 10271000 12435000 0 0 0 18178000 17418000 17341000 0 0 0 21722 1809 21051 403615;403616;403617;403618;403619;403620;403621;403622;403623;403624;403625;403626 247382;247383 247382 1 VLAVIGMLHDK Unmodified 1194.6795 0.67946449 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.245 32.797 2;3 0.00012043 16022 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 96.229 96.229 407720000 52017000 42715000 42454000 0 0 0 19994000 19053000 18630000 0 0 0 31750000 26381000 29430000 0 0 0 43948000 35715000 45628000 0 0 0 21723 177 21052 403627;403628;403629;403630;403631;403632;403633;403634;403635;403636;403637;403638;403639;403640;403641;403642;403643;403644;403645;403646;403647;403648;403649;403650 247384;247385;247386;247387;247388;247389;247390;247391;247392;247393;247394;247395;247396;247397 247385 12 VLAVIGMLHDKDIAGTLAWLK Unmodified 2263.2762 0.27624521 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.042 51.602 4 9.8819E-07 25369 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.31 92.31 105350000 13341000 8366100 11308000 0 0 0 5698700 4881100 5914400 0 0 0 7184600 8271900 6014900 0 0 0 9664800 11501000 13205000 0 0 0 21724 177 21053 403651;403652;403653;403654;403655;403656;403657;403658;403659;403660;403661;403662 247398;247399;247400 247399 3 VLCAAQPLSIQVHPNK Unmodified 1773.956 0.9559737 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 27.549 26.402 2;3 1.2622E-30 12478 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 232.14 219.93 2877200000 200500000 223010000 228130000 0 0 0 341410000 319640000 326560000 0 0 0 214190000 218360000 220560000 0 0 0 200930000 204710000 179200000 0 0 0 21725 56 21054 403663;403664;403665;403666;403667;403668;403669;403670;403671;403672;403673;403674;403675;403676;403677;403678;403679;403680;403681;403682;403683;403684;403685;403686 247401;247402;247403;247404;247405;247406;247407;247408;247409;247410;247411;247412;247413;247414;247415;247416;247417;247418;247419;247420;247421 247402 21 VLCGGDVLK Unmodified 959.511 0.51100218 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS 1 1 21.059 21.534 2 0.00061972 8632 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.57 93.847 213790000 102970000 110830000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21726 1141 21055 403687;403688 247422;247423 247422 2 VLCGITADTIMLQPFPQYDASQVDEAALADTEWLK Unmodified 3908.8852 0.88524269 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 55.611 54.134 3 8.6746E-20 26699 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 154.7 153.09 249050000 27900000 0 26057000 0 0 0 18713000 20298000 19397000 0 0 0 23332000 25844000 24246000 0 0 0 31472000 0 31797000 0 0 0 21727 158 21056 403689;403690;403691;403692;403693;403694;403695;403696;403697;403698 247424 247424 1 VLCLQDEIADHTLK Unmodified 1653.8396 0.83960654 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 3 2 3 2 2 2 33.777 32.28 2;3 8.2367E-17 15124 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 189.72 184 3313400000 154260000 194910000 172410000 44496000 60043000 42003000 88820000 286970000 182610000 68822000 64994000 61719000 86038000 145960000 106700000 27808000 16221000 23816000 401670000 302840000 433730000 105220000 118460000 122920000 21728 215 21057 403699;403700;403701;403702;403703;403704;403705;403706;403707;403708;403709;403710;403711;403712;403713;403714;403715;403716;403717;403718;403719;403720;403721;403722;403723;403724;403725;403726;403727;403728;403729;403730;403731;403732;403733;403734;403735;403736;403737;403738;403739;403740;403741;403742;403743;403744;403745;403746;403747;403748 247425;247426;247427;247428;247429;247430;247431;247432;247433;247434;247435;247436;247437;247438;247439;247440;247441;247442;247443;247444;247445;247446;247447;247448;247449;247450;247451;247452;247453;247454;247455;247456;247457;247458;247459;247460;247461;247462;247463;247464;247465;247466 247462 42 VLCVTALGHTVAEAQK Unmodified 1695.8978 0.89779012 1112 P15640 purD Phosphoribosylamine--glycine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 28.595 27.439 2;3 3.0144E-24 12656 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 282.21 262.97 651820000 209590000 186490000 158880000 0 0 0 0 10713000 10853000 0 0 0 8810500 9841500 10973000 0 0 0 15809000 16764000 13094000 0 0 0 21729 1112 21058 403749;403750;403751;403752;403753;403754;403755;403756;403757;403758;403759;403760;403761;403762 247467;247468;247469;247470;247471;247472;247473;247474;247475;247476;247477;247478 247471 12 VLDAAVAGK Unmodified 842.48617 0.48616764 267 P0A6P1 tsf Elongation factor Ts yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.278 15.828 2 0.00035094 5241 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 113.41 76.825 24278000000 1335000000 1619500000 1392800000 20138000 14704000 13837000 0 2320300000 1996600000 32424000 26060000 17839000 2274600000 2131700000 2182100000 12028000 12795000 13074000 3129600000 2962200000 2713200000 20223000 19124000 18324000 21730 267 21059 403763;403764;403765;403766;403767;403768;403769;403770;403771;403772;403773;403774;403775;403776;403777;403778;403779;403780;403781;403782;403783;403784;403785 247479;247480;247481;247482;247483;247484;247485;247486;247487;247488;247489;247490;247491;247492;247493;247494;247495;247496;247497;247498;247499;247500;247501;247502;247503;247504;247505;247506 247492 28 VLDATQLYLGEIGYSPLLTAEEEVYFAR Unmodified 3159.6016 0.60159791 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 3 3 3 55.9 55.955 2;3;4 1.4449E-121 21976 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 341.8 338.02 3925100000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1212000000 1497600000 1215400000 0 0 0 0 0 0 21731 1089 21060 403786;403787;403788;403789;403790;403791;403792;403793;403794 247507;247508;247509;247510;247511;247512;247513;247514 247507 8 VLDAVLK Unmodified 756.47454 0.47454032 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 3 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 24.217 23.329 1;2 0.0023399 8498 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 114.02 59.486 1689800000 60538000 47058000 41759000 898410 1011800 948140 208280000 205570000 178530000 59136000 58439000 54187000 83886000 66933000 79345000 23243000 18294000 16992000 141830000 152270000 140540000 16006000 16700000 17426000 21732 30 21061 403795;403796;403797;403798;403799;403800;403801;403802;403803;403804;403805;403806;403807;403808;403809;403810;403811;403812;403813;403814;403815;403816;403817;403818;403819;403820;403821;403822;403823;403824;403825;403826;403827;403828;403829;403830;403831;403832;403833;403834;403835;403836;403837;403838;403839;403840;403841;403842 247515;247516;247517;247518;247519;247520;247521;247522;247523;247524;247525;247526;247527;247528;247529;247530;247531;247532;247533;247534;247535;247536;247537 247518 21 VLDAVLKELESGK Unmodified 1399.7922 0.79224564 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 41.9 40.385 3 4.4263E-06 16078 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 121.04 107.36 53848000 0 0 0 0 0 0 0 0 0 10191000 10061000 9150000 0 0 0 6299100 5179400 6623600 0 0 0 2028100 2517300 1798400 21733 30 21062 403843;403844;403845;403846;403847;403848;403849;403850;403851 247538;247539;247540;247541;247542;247543 247543 6 VLDDPHHPYTQLLVSSVLQN Unmodified 2274.1644 0.16444615 1122 P16678 phnK Putative phosphonates utilization ATP-binding protein PhnK yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 46.638 45.125 3 0.0044153 17847 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 47.754 42.996 21316000 0 0 0 0 0 0 0 0 0 0 2900900 3432600 0 0 0 0 0 1403600 0 0 0 3125900 4995000 5457600 21734 1122 21063 403852;403853;403854;403855;403856;403857 247544 247544 1 VLDEFVVHTLGENAR Unmodified 1697.8737 0.87368386 801 P0ADR8 ygdH LOG family protein YgdH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 37.298 35.563 2;3 2.8987E-20 17235 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 234.3 234.3 1247100000 112190000 112130000 92821000 1095700 1453900 1384500 135180000 139980000 130670000 2589700 1859000 1595500 73952000 77416000 65554000 0 0 758260 99260000 93267000 98852000 2132100 1432400 1533000 21735 801 21064 403858;403859;403860;403861;403862;403863;403864;403865;403866;403867;403868;403869;403870;403871;403872;403873;403874;403875;403876;403877;403878;403879;403880;403881;403882;403883;403884;403885;403886;403887;403888;403889;403890;403891 247545;247546;247547;247548;247549;247550;247551;247552;247553;247554;247555;247556;247557;247558;247559;247560;247561;247562;247563;247564;247565;247566 247557 22 VLDELTLAR Unmodified 1028.5866 0.58660996 6;12 CON__P02533;CON__Q04695;CON__Q9QWL7;CON__Q6IFX2;CON__P08779 no no 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.466 31.984 2 0.0001886 12227 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 127.56 66.975 101820000 0 0 0 3837000 2933300 3747700 0 0 0 16326000 20052000 21729000 0 0 0 3952400 2494000 3485200 0 0 0 8112000 7266600 7885200 + 21736 6;12 21065 403892;403893;403894;403895;403896;403897;403898;403899;403900;403901;403902;403903 247567;247568;247569;247570;247571;247572;247573;247574 247570 7 VLDELTLSK Unmodified 1016.5754 0.57537657 7;4 CON__P02535-1;CON__ENSEMBL:ENSP00000377550;CON__P13646-1 no no 0 0 0 By matching By MS/MS By matching 1 1 1 31.14 28.756 2 0.042716 11028 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 56.258 34.73 9230700 0 0 0 0 0 0 0 0 0 3392900 2802800 3034900 0 0 0 0 0 0 0 0 0 0 0 0 + 21737 7;4 21066 403904;403905;403906 247575 247575 1 VLDELTLTK Unmodified 1030.591 0.59102664 13 CON__P13645 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 31.929 30.518 2 0.00017574 10182 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 128.69 103.24 598860000 5319200 0 0 38732000 36173000 32461000 0 0 0 45809000 34634000 34761000 0 0 0 28182000 18863000 22312000 0 0 0 98941000 81951000 120730000 + 21738 13 21067 403907;403908;403909;403910;403911;403912;403913;403914;403915;403916;403917;403918;403919 247576;247577;247578;247579;247580;247581;247582;247583;247584;247585;247586;247587 247577 12 VLDFEEGR Unmodified 963.46616 0.46616048 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.039 24.058 2 5.1677E-05 8568 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 170.73 149.74 436850000 0 15431000 11394000 4463300 4613000 4851600 0 30110000 20640000 29283000 27965000 23690000 27468000 21860000 24095000 11270000 10367000 9723000 31500000 34802000 29460000 23599000 20311000 19950000 21739 272 21068 403920;403921;403922;403923;403924;403925;403926;403927;403928;403929;403930;403931;403932;403933;403934;403935;403936;403937;403938;403939;403940;403941;403942 247588;247589;247590;247591;247592;247593;247594;247595;247596;247597;247598;247599 247593 12 VLDGAVMVYCAVGGVQPQSETVWR Unmodified 2620.2778 0.27777812 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 1 1 3 3 3 1 1 3 3 3 1 1 3 3 2 1 1 52.648 51.427 2;3;4 4.488E-50 25472 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 305.4 294.54 5870900000 456330000 449340000 353220000 0 7638200 9083000 428640000 404090000 363050000 11719000 9304100 0 496330000 454530000 406110000 0 4670400 6156200 726370000 682340000 593270000 5600200 3113200 0 21740 264 21069 403943;403944;403945;403946;403947;403948;403949;403950;403951;403952;403953;403954;403955;403956;403957;403958;403959;403960;403961;403962;403963;403964;403965;403966;403967;403968;403969;403970;403971;403972;403973;403974;403975;403976;403977;403978;403979;403980;403981;403982;403983;403984 247600;247601;247602;247603;247604;247605;247606;247607;247608;247609;247610;247611;247612;247613;247614;247615;247616;247617;247618;247619;247620;247621;247622;247623;247624;247625;247626;247627;247628;247629;247630;247631 247603 30 VLDHQDVFGVLLQQVGTTGEIHDYTALISELK Unmodified 3537.8355 0.83551402 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 2 1 1 2 2 1 2 2 2 2 2 1 2 54.996 53.539 3;4 2.3088E-43 26357 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 207.99 206.39 4508900000 321020000 316140000 299100000 19536000 22631000 22145000 395320000 394490000 419890000 22982000 28521000 29764000 295100000 235990000 249650000 0 0 0 478110000 457070000 430280000 25437000 21162000 24605000 21741 1409 21070 403985;403986;403987;403988;403989;403990;403991;403992;403993;403994;403995;403996;403997;403998;403999;404000;404001;404002;404003;404004;404005;404006;404007;404008;404009;404010;404011;404012;404013;404014;404015;404016;404017;404018;404019;404020 247632;247633;247634;247635;247636;247637;247638;247639;247640;247641;247642;247643;247644;247645;247646;247647;247648;247649;247650 247637 19 VLDICAR Unmodified 845.44292 0.44292261 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.644 20.843 2 0.0006293 8056 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 149.06 118.39 10631000000 1547400000 1481800000 1120200000 8688700 6850100 7568300 812820000 828330000 797420000 367890 1985900 1717800 637630000 577160000 684990000 0 0 0 678650000 692390000 737930000 2667300 1573800 2294900 21742 391 21071 404021;404022;404023;404024;404025;404026;404027;404028;404029;404030;404031;404032;404033;404034;404035;404036;404037;404038;404039;404040;404041 247651;247652;247653;247654;247655;247656;247657;247658 247656 8 VLDKEAWPLMVER Unmodified 1584.8334 0.83339895 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.011 36.393 3 6.8735E-05 14204 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 87.498 82.697 51863000 0 0 0 1646500 2078700 327620 4100200 0 0 7523000 5800500 6125600 0 0 0 1779800 1633100 1735100 3670700 0 0 5515800 5034800 4891900 21743 1488 21072 404042;404043;404044;404045;404046;404047;404048;404049;404050;404051;404052;404053;404054;404055 247659;247660;247661;247662;247663;247664 247662 6 VLDLACQAQALIAESGAQLQGSVELAHQR Unmodified 3075.5771 0.57713127 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 54.465 53.003 3 1.1702E-16 26346 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 152.21 151.45 220730000 0 0 0 0 0 0 38758000 35769000 30524000 0 0 0 33118000 18456000 24953000 0 0 0 13482000 13202000 12473000 0 0 0 21744 1087 21073 404056;404057;404058;404059;404060;404061;404062;404063;404064 247665;247666;247667;247668 247665 1 VLDLASPIGR Unmodified 1039.6026 0.60259438 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 29.708 28.568 2 1.8844E-06 15661 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 160.11 143.96 1546300000 203260000 198100000 178020000 18215000 18463000 19796000 93439000 85508000 91817000 99314000 82243000 83529000 52962000 49028000 51236000 17613000 16160000 16119000 72945000 0 78760000 7526100 7114800 5135900 21745 982 21074 404065;404066;404067;404068;404069;404070;404071;404072;404073;404074;404075;404076;404077;404078;404079;404080;404081;404082;404083;404084;404085;404086;404087;404088;404089;404090;404091;404092;404093;404094 247669;247670;247671;247672;247673;247674;247675;247676;247677;247678;247679;247680;247681;247682;247683;247684;247685;247686;247687;247688;247689;247690 247689 22 VLDLIAHISK Unmodified 1107.6652 0.66519463 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 4 5 5 2 2 2 5 4 5 4 5 5 2 2 2 7 6 2 1 33.674 32.334 2;3 8.8907E-05 13897 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 131.5 126.86 63719000000 4338500000 3895500000 3424700000 32112000 27322000 17211000 7031500000 7791700000 7598000000 0 0 0 4305000000 4361400000 4019400000 12121000 10605000 12676000 6050300000 5372000000 5410800000 0 0 7808500 21746 504 21075 404095;404096;404097;404098;404099;404100;404101;404102;404103;404104;404105;404106;404107;404108;404109;404110;404111;404112;404113;404114;404115;404116;404117;404118;404119;404120;404121;404122;404123;404124;404125;404126;404127;404128;404129;404130;404131;404132;404133;404134;404135;404136;404137;404138;404139;404140;404141;404142;404143;404144;404145;404146;404147;404148;404149;404150;404151;404152;404153;404154;404155;404156;404157;404158;404159;404160;404161;404162;404163;404164 247691;247692;247693;247694;247695;247696;247697;247698;247699;247700;247701;247702;247703;247704;247705;247706;247707;247708;247709;247710;247711;247712;247713;247714;247715;247716;247717;247718;247719;247720;247721;247722;247723;247724;247725;247726;247727;247728;247729;247730;247731;247732;247733;247734;247735;247736;247737;247738;247739;247740;247741;247742;247743;247744;247745;247746;247747;247748;247749;247750;247751;247752;247753;247754;247755;247756;247757;247758;247759;247760;247761;247762;247763;247764;247765;247766;247767;247768;247769;247770;247771;247772;247773;247774;247775;247776;247777;247778;247779;247780;247781;247782;247783;247784;247785;247786;247787;247788;247789;247790;247791;247792;247793;247794;247795;247796;247797;247798;247799;247800;247801;247802 247782 112 VLDQPTQDGFVYR Unmodified 1536.7573 0.75725712 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 31.598 30.257 2 1.0247E-09 14309 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 209.1 205.08 190940000 25835000 26077000 23409000 0 0 0 15142000 14857000 16201000 0 0 0 8701200 9646200 10502000 0 0 0 15090000 12984000 12498000 0 0 0 21747 1353 21076 404165;404166;404167;404168;404169;404170;404171;404172;404173;404174;404175;404176;404177 247803;247804;247805;247806;247807;247808;247809;247810;247811 247809 9 VLDSKPSVLALNIQR Unmodified 1651.9621 0.96210494 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 32.957 31.364 2;3 3.7347E-12 15295 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.21 134.31 1566800000 92024000 108950000 77374000 6079800 4889800 5155100 142730000 124410000 120480000 2060300 1533300 2109200 128480000 118080000 117780000 490800 0 0 151650000 165940000 164650000 11872000 10038000 10058000 21748 1044 21077 404178;404179;404180;404181;404182;404183;404184;404185;404186;404187;404188;404189;404190;404191;404192;404193;404194;404195;404196;404197;404198;404199;404200;404201;404202;404203;404204;404205;404206;404207;404208;404209;404210;404211;404212;404213;404214;404215 247812;247813;247814;247815;247816;247817;247818;247819;247820;247821;247822;247823;247824;247825;247826;247827;247828;247829;247830;247831;247832;247833;247834;247835;247836;247837 247812 26 VLDTIYGVIDK Unmodified 1234.6809 0.68090428 866 P0AEJ6 eutB Ethanolamine ammonia-lyase heavy chain yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 40.515 38.877 2 0.0021028 18271 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 73.841 54.055 54684000 5314600 6593000 7466500 403440 416580 0 4258000 0 4257800 0 0 0 4490800 3469400 3904200 0 0 0 6801300 3945300 3362900 0 0 0 21749 866 21078 404216;404217;404218;404219;404220;404221;404222;404223;404224;404225;404226;404227;404228 247838;247839;247840;247841;247842 247842 5 VLDTTMQMYEQWR Unmodified 1699.7698 0.76981241 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.251 41.736 2 1.2992E-05 20182 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 157.95 157.51 111540000 12831000 14111000 12747000 0 0 0 5522600 7931600 7406300 0 0 0 8419400 7068900 6896100 0 0 0 9573400 9657800 9375900 0 0 0 21750 953 21079 404229;404230;404231;404232;404233;404234;404235;404236;404237;404238;404239;404240 247843;247844 247843 0 VLDVGCGAGVLSVAFAR Unmodified 1689.8872 0.88722543 1537 P39406 rsmC Ribosomal RNA small subunit methyltransferase C yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 51.11 49.806 2 1.0242E-08 24317 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.64 106.61 26475000 6445200 5873000 5516700 0 0 0 3573000 2086400 0 0 0 0 0 0 0 0 0 0 0 0 2980600 0 0 0 21751 1537 21080 404241;404242;404243;404244;404245;404246 247845 247845 1 VLDVGCGGGILAESMAR Unmodified 1703.8335 0.8334753 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 42.83 41.152 2 6.2192E-11 19939 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 195.77 189.11 569010000 63416000 62281000 58318000 7797100 6864100 6368400 55142000 58588000 50719000 0 0 0 0 37705000 0 0 0 0 51790000 56110000 53912000 0 0 0 21752 1146 21081 404247;404248;404249;404250;404251;404252;404253;404254;404255;404256;404257;404258;404259 247846;247847;247848;247849;247850;247851;247852;247853;247854;247855;247856;247857 247856 12 VLDVTLLNELAVSSLTR Unmodified 1842.0462 0.046228496 1939 P77756 queC 7-cyano-7-deazaguanine synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.242 53.769 2 9.153E-19 26667 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 188.09 182.92 403840000 28278000 31308000 25200000 0 0 0 39797000 34123000 25572000 0 0 0 40433000 32691000 37080000 0 0 0 38409000 35603000 35348000 0 0 0 21753 1939 21082 404260;404261;404262;404263;404264;404265;404266;404267;404268;404269;404270;404271 247858;247859;247860;247861;247862;247863;247864 247860 7 VLDWAAEGLHNVSISQVELR Unmodified 2235.1648 0.1647805 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 47.361 45.977 2;3 1.4754E-68 22440 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 379.9 347.83 2940400000 249590000 209410000 218130000 0 0 0 200180000 212930000 194100000 4005500 4693700 4656900 238120000 206960000 190720000 0 2681700 3729000 367640000 305550000 316560000 3631500 4004800 3068600 21754 29 21083 404272;404273;404274;404275;404276;404277;404278;404279;404280;404281;404282;404283;404284;404285;404286;404287;404288;404289;404290;404291;404292;404293;404294;404295;404296;404297;404298;404299;404300;404301;404302;404303 247865;247866;247867;247868;247869;247870;247871;247872;247873;247874;247875;247876;247877;247878;247879;247880;247881;247882;247883;247884;247885;247886;247887;247888 247872 24 VLEEALLQASMPYR Unmodified 1618.8389 0.83887826 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 2 1 1 2 2 1 1 1 1 2 2 2 2 1 1 2 1 1 46.329 45.129 2;3 5.9101E-11 17163 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 199.09 180.34 156150000 8405000 12782000 7072300 0 0 0 6988700 9578700 8663700 1619600 1436000 0 5746800 5273100 5655600 21557000 15815000 16869000 6309000 7922500 9000300 2471500 2987200 0 21755 80 21084 404304;404305;404306;404307;404308;404309;404310;404311;404312;404313;404314;404315;404316;404317;404318;404319;404320;404321;404322;404323;404324;404325;404326;404327;404328;404329;404330 247889;247890;247891;247892;247893;247894 247890 4 VLEELEDWLHNLPGTSVDILR Unmodified 2447.2696 0.2696395 764 P0AD12 yeeZ Protein YeeZ yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.376 53.903 3 4.8171E-08 26895 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.13 103.94 588630000 52820000 56936000 48204000 0 0 0 70844000 47351000 50804000 0 0 0 46055000 36685000 32098000 0 0 0 51998000 54188000 40651000 0 0 0 21756 764 21085 404331;404332;404333;404334;404335;404336;404337;404338;404339;404340;404341;404342 247895;247896 247895 2 VLEGGEGHDVVLVEIGGTVGDIESLPFLEAIR Unmodified 3318.7347 0.73473735 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.522 54.035 3 1.7237E-18 25582 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 146.89 140.76 1604300000 71795000 77653000 72771000 0 0 0 145950000 140370000 127170000 3075900 2979300 0 153260000 131340000 111920000 0 0 0 202840000 178620000 184550000 0 0 0 21757 337 21086 404343;404344;404345;404346;404347;404348;404349;404350;404351;404352;404353;404354;404355;404356 247897;247898;247899;247900 247900 4 VLEGQIDDR Unmodified 1043.5247 0.52473799 1029 P0AGL7 rsmE Ribosomal RNA small subunit methyltransferase E yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 16.199 16.94 2 0.0052788 6079 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 75.043 67.85 77413000 12758000 12305000 9516500 0 0 0 8179400 8357500 8436900 0 0 0 0 0 0 0 0 0 7352700 6643000 3863800 0 0 0 21758 1029 21087 404357;404358;404359;404360;404361;404362;404363;404364;404365 247901;247902;247903 247901 1 VLEHWHTGSMTRR Unmodified 1608.7943 0.7943281 1434 P33937 napA Periplasmic nitrate reductase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.643 25.545 3 0.15265 11553 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 15.031 3.7608 278180000 31978000 25994000 4584400 2318700 1515300 1813100 27863000 33301000 28498000 0 9930900 5638300 5062600 18365000 0 0 0 0 27563000 27400000 26351000 0 0 0 21759 1434 21088 404366;404367;404368;404369;404370;404371;404372;404373;404374;404375;404376;404377;404378;404379;404380;404381 247904;247905;247906 247906 3 VLEIVLASLDEPR Unmodified 1452.8188 0.81879474 738 P0ACP1 cra Catabolite repressor/activator yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.587 50.364 2 8.4368E-07 24757 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 138.71 127 106730000 9549800 15095000 11857000 738180 899720 791980 8112800 8725700 8574800 0 1215400 1347700 4845500 4857100 5070800 0 540930 0 7643500 7446500 6654900 1441100 1319400 0 21760 738 21089 404382;404383;404384;404385;404386;404387;404388;404389;404390;404391;404392;404393;404394;404395;404396;404397;404398;404399;404400;404401 247907;247908;247909 247907 3 VLELINTPEMLNGVK Unmodified 1668.912 0.9120432 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 48.875 47.496 3 0.11061 23227 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 24.558 20.655 28402000 6036800 4323400 8251400 0 0 0 0 0 2656300 0 0 0 0 0 0 0 0 0 0 0 0 3848300 0 3285800 21761 1919 21090 404402;404403;404404;404405;404406;404407 247910;247911;247912 247910 0 VLEMVEAGSELR Unmodified 1331.6755 0.67550132 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 1 2 2 2 2 2 2 34.357 32.879 2;3 7.8243E-14 15720 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.95 147.12 673110000 9495200 8004300 6866400 0 0 0 5672300 9127500 5846600 0 0 748030 209120000 208770000 194110000 0 0 0 5325700 5041800 4979600 0 0 0 21762 635 21091 404408;404409;404410;404411;404412;404413;404414;404415;404416;404417;404418;404419;404420;404421;404422;404423;404424;404425;404426;404427;404428;404429;404430;404431;404432;404433 247913;247914;247915;247916;247917;247918;247919;247920;247921;247922;247923;247924;247925;247926;247927;247928 247921 16 VLENAEGDR Unmodified 1001.4778 0.47778779 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 2 2 11.715 12.272 2 3.5179E-08 2652 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 196.25 178.21 11068000000 780810000 762550000 684020000 35833000 41164000 37023000 1096000000 1116700000 1104200000 147920000 151960000 144460000 733330000 766910000 640180000 11288000 21292000 13000000 959050000 804950000 871230000 44360000 52250000 47422000 21763 293 21092 404434;404435;404436;404437;404438;404439;404440;404441;404442;404443;404444;404445;404446;404447;404448;404449;404450;404451;404452;404453;404454;404455;404456;404457;404458;404459;404460;404461;404462;404463;404464;404465 247929;247930;247931;247932;247933;247934;247935;247936;247937;247938;247939;247940;247941;247942;247943;247944;247945 247938 17 VLENAEGDRTTPSIIAYTQDGETLVGQPAK Unmodified 3172.5888 0.58880139 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 41.299 39.181 3 1.3276E-31 15862 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 189.34 185.11 135340000 0 0 0 4941500 6763300 6585100 0 0 0 30850000 35984000 26358000 0 0 0 0 0 0 0 0 0 8402700 6897200 8557900 21764 293 21093 404466;404467;404468;404469;404470;404471;404472;404473;404474 247946;247947;247948;247949;247950;247951;247952;247953;247954 247946 9 VLENAEGDRTTPSIIAYTQDGETLVGQPAKR Unmodified 3328.6899 0.68991242 293 P0A6Y8 dnaK Chaperone protein DnaK yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 4 2 1 1 3 3 3 37.013 35.172 3;4;5 9.6827E-33 14167 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 190.6 186.78 1056600000 0 0 0 67428000 66663000 48621000 0 0 0 226000000 219610000 174950000 0 0 0 26921000 21263000 15631000 0 0 0 60505000 71275000 57694000 21765 293 21094 404475;404476;404477;404478;404479;404480;404481;404482;404483;404484;404485;404486;404487;404488;404489;404490;404491;404492;404493;404494;404495;404496;404497;404498;404499;404500;404501;404502;404503;404504;404505;404506 247955;247956;247957;247958;247959;247960;247961;247962;247963;247964;247965;247966;247967;247968;247969;247970;247971;247972;247973;247974;247975;247976;247977 247959 23 VLENALVPPMGESTVK Unmodified 1682.8913 0.89130776 1379 P31697 fimC Chaperone protein FimC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 38.464 36.961 2 6.7347E-05 18029 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 85.258 70.839 35019000 5776000 5667000 5435000 0 0 0 0 0 0 0 0 0 2700000 1738200 2486400 0 0 0 6453800 0 4763000 0 0 0 21766 1379 21095 404507;404508;404509;404510;404511;404512;404513;404514 247978 247978 1 VLEQSAESVPEYGK Unmodified 1534.7515 0.75150304 530 P0A9K3 ybeZ PhoH-like protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.877 22.286 2 4.9691E-15 9690 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 199.43 192.06 663070000 72549000 73126000 82206000 3928400 3243000 3341900 66469000 58680000 62320000 0 3467000 0 34651000 30926000 28710000 0 0 0 44954000 47747000 46754000 0 0 0 21767 530 21096 404515;404516;404517;404518;404519;404520;404521;404522;404523;404524;404525;404526;404527;404528;404529;404530;404531 247979;247980;247981;247982;247983;247984;247985;247986;247987;247988;247989;247990;247991;247992;247993;247994;247995;247996 247981 18 VLESAIANAEHNDGADIDDLK Unmodified 2209.0499 0.049869904 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 3 2 2 1 2 3 3 3 1 1 1 3 3 3 2 2 2 33.455 31.947 2;3 8.9287E-75 15161 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 346.18 312 9399000000 1275100000 1186300000 1018500000 12788000 11765000 10640000 380180000 335790000 353910000 27508000 19759000 27908000 518760000 511240000 501270000 22772000 20147000 26687000 1006200000 1011500000 999260000 41340000 39767000 39907000 21768 1636 21097 404532;404533;404534;404535;404536;404537;404538;404539;404540;404541;404542;404543;404544;404545;404546;404547;404548;404549;404550;404551;404552;404553;404554;404555;404556;404557;404558;404559;404560;404561;404562;404563;404564;404565;404566;404567;404568;404569;404570;404571;404572;404573;404574;404575;404576;404577;404578;404579;404580;404581;404582;404583;404584;404585 247997;247998;247999;248000;248001;248002;248003;248004;248005;248006;248007;248008;248009;248010;248011;248012;248013;248014;248015;248016;248017;248018;248019;248020;248021;248022;248023;248024;248025;248026;248027;248028;248029;248030;248031;248032;248033;248034 248026 38 VLESAIANAEHNDGADIDDLKVTK Unmodified 2537.2609 0.26092531 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 32.2 30.857 3;4 4.3023E-15 10901 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 138.93 126.44 870600000 18473000 10949000 21526000 27981000 39429000 25284000 0 0 0 83355000 64455000 42422000 6015900 6487500 0 124190000 94438000 106950000 0 0 15179000 60255000 69574000 53634000 21769 1636 21098 404586;404587;404588;404589;404590;404591;404592;404593;404594;404595;404596;404597;404598;404599;404600;404601;404602;404603;404604;404605;404606;404607;404608;404609;404610;404611;404612;404613;404614;404615;404616;404617;404618 248035;248036;248037;248038;248039;248040;248041;248042;248043;248044;248045;248046;248047;248048;248049;248050;248051;248052;248053;248054;248055;248056;248057;248058;248059 248036 25 VLESGVDILIGTTGR Unmodified 1528.8461 0.84607213 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 45.658 44.079 2 0.0015341 21381 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 65.395 47.586 69416000 7141100 6306100 5453500 0 0 0 7491400 5615100 8075400 1597200 0 0 4543100 2787300 3218100 0 0 0 8721400 0 7080800 1385700 0 0 21770 438 21099 404619;404620;404621;404622;404623;404624;404625;404626;404627;404628;404629;404630;404631 248060;248061;248062;248063 248063 0 VLESLHGALAADAALLSAAER Unmodified 2077.1168 0.11676768 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 48.93 47.649 2;3 4.2841E-63 23726 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 287.55 279.83 631970000 0 0 0 3254500 2696800 3422600 126000000 120460000 116480000 9880300 8826500 8656600 10615000 9783800 9173600 7524300 7421100 13693000 126020000 15468000 13368000 6450700 6464000 6315200 21771 294 21100 404632;404633;404634;404635;404636;404637;404638;404639;404640;404641;404642;404643;404644;404645;404646;404647;404648;404649;404650;404651;404652;404653;404654;404655;404656 248064;248065;248066;248067;248068;248069;248070;248071;248072;248073;248074;248075;248076;248077;248078;248079;248080;248081;248082;248083;248084 248070 19 VLETILHSEQAK Unmodified 1366.7456 0.7456298 1119 P16456 selD Selenide, water dikinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 22.077 21.882 2;3 2.1991E-08 8856 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 203.02 180.38 2680400000 172670000 193000000 145810000 11702000 10399000 9607100 261220000 313250000 256610000 38695000 36003000 36011000 201200000 169310000 160410000 6482200 5892300 5942400 199630000 200720000 200590000 17380000 16031000 11854000 21772 1119 21101 404657;404658;404659;404660;404661;404662;404663;404664;404665;404666;404667;404668;404669;404670;404671;404672;404673;404674;404675;404676;404677;404678;404679;404680;404681;404682;404683;404684;404685;404686;404687;404688;404689;404690;404691;404692;404693;404694;404695;404696;404697;404698;404699;404700;404701;404702;404703;404704 248085;248086;248087;248088;248089;248090;248091;248092;248093;248094;248095;248096;248097;248098;248099;248100;248101;248102;248103;248104;248105;248106;248107;248108;248109;248110;248111;248112;248113;248114;248115;248116;248117;248118;248119;248120;248121;248122;248123;248124;248125 248119 40 VLEVQGMK Unmodified 902.48954 0.48953845 1184 P21599 pykA Pyruvate kinase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.333 19.696 2 0.00075894 7802 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 124.37 102.83 5510800000 295170000 261700000 282090000 7767700 7761400 7967100 630220000 685800000 615630000 11737000 9769800 9422300 526870000 505440000 441300000 0 0 4427500 363110000 410730000 414350000 6728800 6531600 6316200 21773 1184 21102 404705;404706;404707;404708;404709;404710;404711;404712;404713;404714;404715;404716;404717;404718;404719;404720;404721;404722;404723;404724;404725;404726 248126;248127;248128;248129;248130;248131;248132;248133;248134;248135;248136;248137;248138;248139;248140;248141;248142;248143;248144 248128 18 VLEVQGMK Oxidation (M) 918.48445 0.48445308 1184 P21599 pykA Pyruvate kinase II yes yes 0 1 0 By MS/MS By MS/MS 1 1 12.83 13.584 2 0.0071231 4044 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 79.116 54.484 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21774 1184 21102 404727;404728 248145;248146 248146 500 2 VLEVSNLR Unmodified 928.53418 0.53418046 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.969 22.366 2 0.0039041 6939 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 89.142 49.924 2803400000 263870000 266400000 264510000 3461000 4006400 3788800 0 266440000 268730000 0 0 0 265070000 209230000 0 0 0 0 323230000 332880000 319450000 4635200 2993000 4725000 21775 561 21103 404729;404730;404731;404732;404733;404734;404735;404736;404737;404738;404739;404740;404741;404742;404743;404744 248147;248148;248149 248149 3 VLEVSNLRK Unmodified 1056.6291 0.62914348 561 P0A9W3 ettA Energy-dependent translational throttle protein EttA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 15.474 16.002 3 0.016322 3897 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 58.433 47.634 15476000 0 0 0 2518900 2627100 2578500 0 0 0 3687400 0 2403600 0 0 0 0 0 0 0 0 0 0 0 1660200 21776 561 21104 404745;404746;404747;404748;404749;404750 248150;248151;248152 248152 3 VLEVTLR Unmodified 828.5069 0.50690308 490 P0A955 eda KHG/KDPG aldolase;4-hydroxy-2-oxoglutarate aldolase;2-dehydro-3-deoxy-phosphogluconate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.24 25.133 2 0.00043902 11251 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.11 79.282 5037300000 376730000 408000000 343060000 0 0 0 662750000 624250000 650490000 0 904780 1208800 445270000 0 492550000 0 536460 857370 368510000 358240000 301320000 841430 1054200 769790 21777 490 21105 404751;404752;404753;404754;404755;404756;404757;404758;404759;404760;404761;404762;404763;404764;404765;404766;404767;404768 248153;248154;248155;248156;248157;248158;248159;248160 248155 8 VLFCHGGGR Unmodified 1001.4865 0.48651876 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 12.645 13.25 2 0.00063723 2822 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 105.12 101.13 99576000 0 0 0 18410000 14563000 12983000 0 0 0 18699000 17153000 17768000 0 0 0 0 0 0 0 0 0 0 0 0 21778 1211 21106 404769;404770;404771;404772;404773;404774 248161;248162;248163;248164 248162 4 VLFFAQVR Unmodified 978.56509 0.56508666 1344 P30748 moaD Molybdopterin synthase sulfur carrier subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 39.834 38.158 2 0.036092 19153 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 62.714 62.714 216420000 23966000 21217000 18193000 385400 0 0 20304000 20059000 21156000 0 0 0 14018000 13430000 14160000 0 0 0 16642000 14642000 18250000 0 0 0 21779 1344 21107 404775;404776;404777;404778;404779;404780;404781;404782;404783;404784;404785;404786;404787 248165;248166;248167;248168;248169;248170;248171;248172 248165 1 VLFPYFAGFSQLLR Unmodified 1656.9028 0.90279914 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 55.669 54.295 2 0.024014 26870 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 57.019 40.766 102440000 34334000 34677000 30259000 0 0 1606300 0 0 0 0 0 0 0 1566500 0 0 0 0 0 0 0 0 0 0 21780 1173 21108 404788;404789;404790;404791;404792 248173 248173 1 VLFVDQGDEQALR Unmodified 1488.7573 0.75725712 53 P00935 metB Cystathionine gamma-synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.001 34.445 2 7.585E-08 16514 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.87 186.02 173310000 15810000 18816000 16861000 0 0 0 23477000 23457000 23234000 0 0 0 8538800 7078900 6628200 0 0 0 8485300 9594200 11331000 0 0 0 21781 53 21109 404793;404794;404795;404796;404797;404798;404799;404800;404801;404802;404803;404804 248174;248175;248176;248177;248178;248179;248180 248178 4 VLGANFDGSK Unmodified 1006.5084 0.50835964 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.765 20.884 2 9.0124E-06 8223 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.49 133.97 2776600000 0 328250000 306540000 2462500 2166500 2800000 496660000 504050000 495840000 2833600 1237500 1336300 0 0 0 0 0 0 197620000 214960000 218820000 1027100 0 0 21782 1086 21110 404805;404806;404807;404808;404809;404810;404811;404812;404813;404814;404815;404816;404817;404818;404819 248181;248182;248183;248184;248185;248186;248187;248188;248189 248187 9 VLGAWSDLTR Unmodified 1116.5928 0.59275797 472 P0A8Y3 yihX Alpha-D-glucose-1-phosphate phosphatase YihX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.716 35.061 2 8.9943E-05 16840 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 131.41 127.47 716480000 86655000 69781000 77729000 0 0 0 85617000 76824000 73957000 0 0 0 43316000 34434000 36570000 0 0 0 48714000 40896000 41988000 0 0 0 21783 472 21111 404820;404821;404822;404823;404824;404825;404826;404827;404828;404829;404830;404831 248190;248191;248192;248193;248194;248195;248196;248197;248198 248194 1 VLGCQAVTCVAR Unmodified 1332.6642 0.66422513 1861 P76440 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.632 22.033 2 1.1038E-16 9519 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 204.07 188.41 888210000 5230800 4950000 0 0 0 0 211060000 214400000 189010000 0 0 3605900 60890000 59117000 63268000 0 0 0 24221000 26824000 25634000 0 0 0 21784 1861 21112 404832;404833;404834;404835;404836;404837;404838;404839;404840;404841;404842;404843 248199;248200;248201;248202;248203;248204;248205;248206 248201 8 VLGCYPSENVVPVDPT Unmodified 1744.8342 0.83418681 529 P0A9J8 pheA P-protein;Chorismate mutase;Prephenate dehydratase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.58 44.123 2 0.00027742 20587 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 101.97 96.251 241000000 59919000 49983000 51808000 0 0 0 7090100 6681500 8030900 0 0 0 0 10306000 12351000 0 0 0 9815100 13760000 11259000 0 0 0 21785 529 21113 404844;404845;404846;404847;404848;404849;404850;404851;404852;404853;404854 248207;248208 248208 2 VLGDKIQLVGDDLFVTNTK Unmodified 2074.131 0.13102076 270 P0A6P9 eno Enolase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 45.564 43.884 3 8.5739E-07 15642 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 96.487 87.204 31838000 0 0 0 4226200 5469100 4909300 0 0 1231300 4388300 3455300 3884300 0 0 0 2539200 0 0 0 0 0 0 0 1735200 21786 270 21114 404855;404856;404857;404858;404859;404860;404861;404862;404863 248209;248210 248210 2 VLGETIK Unmodified 758.4538 0.45380487 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.237 16.06 2 0.045433 5421 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 79.454 42.867 1258600000 159650000 219620000 175760000 0 0 197850 102270000 107350000 100740000 0 0 0 61207000 51119000 56616000 0 0 0 74313000 75024000 74720000 0 0 0 21787 43 21115 404864;404865;404866;404867;404868;404869;404870;404871;404872;404873;404874;404875;404876 248211;248212;248213 248213 0 VLGETIKDALGEHILER Unmodified 1892.0367 0.036726442 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 1 1 1 37.651 35.834 3;4 3.0493E-07 17251 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 108.56 91.873 536250000 69769000 89070000 67299000 1110400 1205100 1139500 36390000 44938000 46613000 6401800 0 3400800 21347000 21089000 17583000 0 0 0 34748000 35711000 34127000 1392900 1134400 1780600 21788 43 21116 404877;404878;404879;404880;404881;404882;404883;404884;404885;404886;404887;404888;404889;404890;404891;404892;404893;404894;404895;404896;404897;404898;404899;404900;404901;404902;404903;404904;404905;404906;404907;404908;404909;404910 248214;248215;248216;248217;248218;248219;248220;248221;248222;248223 248220 10 VLGFITDAGGR Unmodified 1104.5928 0.59275797 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.278 33.775 2 5.2451E-08 16069 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.6 154.11 8011900000 461340000 382760000 323090000 10653000 11060000 11403000 713210000 702220000 723020000 17193000 17104000 16953000 711420000 711360000 650530000 11251000 6342000 6362000 882630000 845780000 764110000 10972000 9933700 11173000 21789 192 21117 404911;404912;404913;404914;404915;404916;404917;404918;404919;404920;404921;404922;404923;404924;404925;404926;404927;404928;404929;404930;404931;404932;404933;404934 248224;248225;248226;248227;248228;248229;248230;248231;248232;248233;248234;248235;248236;248237;248238;248239;248240;248241;248242;248243;248244;248245;248246 248242 18 VLGGGVVPGSAILIGGNPGAGK Unmodified 1889.0734 0.0734463 1250 P24554 radA DNA repair protein RadA yes yes 0 0 0 By matching By matching By MS/MS By matching 1 1 1 1 45.946 43.894 2 0.00028236 17639 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 74.537 73.934 16930000 0 8621300 0 0 0 0 0 0 0 2873900 3210900 2224300 0 0 0 0 0 0 0 0 0 0 0 0 21790 1250 21118 404935;404936;404937;404938 248247 248247 1 VLGGSHR Unmodified 724.39802 0.39802133 820 P0ADY3 rplN 50S ribosomal protein L14 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 7.2639 7.8388 2 0.0023081 1813 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 114.59 86.413 3106400000 378620000 297910000 316910000 18919000 17563000 15885000 158970000 137730000 139210000 43126000 36583000 42581000 185030000 166860000 142610000 42709000 25111000 24824000 242660000 268460000 270080000 43873000 40981000 49221000 21791 820 21119 404939;404940;404941;404942;404943;404944;404945;404946;404947;404948;404949;404950;404951;404952;404953;404954;404955;404956;404957;404958;404959;404960;404961;404962;404963;404964;404965 248248;248249;248250;248251;248252;248253;248254;248255;248256;248257;248258;248259;248260;248261;248262;248263;248264 248254 16 VLGGSHRR Unmodified 880.49913 0.49913236 820 P0ADY3 rplN 50S ribosomal protein L14 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 8.548 8.9291 2 0.056666 1742 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 60.788 51.317 36873000 0 0 0 2773100 4543400 4484800 0 0 0 3216400 2676200 3241200 0 0 0 9326800 1158500 1009500 0 0 0 0 4443300 0 21792 820 21120 404966;404967;404968;404969;404970;404971;404972;404973;404974;404975 248265;248266;248267;248268;248269;248270 248265 6 VLGHLGLER Unmodified 992.57671 0.57671398 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.804 19.19 2 0.00014884 7187 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.03 86.421 1791700000 144510000 160570000 159920000 2073900 1568700 2404600 120770000 142480000 120640000 2243900 1925000 2264200 162530000 169650000 153720000 1752900 0 0 143160000 142530000 153350000 1446800 2161300 0 21793 1388 21121 404976;404977;404978;404979;404980;404981;404982;404983;404984;404985;404986;404987;404988;404989;404990;404991;404992;404993;404994;404995;404996 248271;248272;248273;248274;248275;248276;248277;248278;248279;248280;248281;248282;248283;248284 248279 14 VLGKPQTDPTLEWFLSHCHIHK Unmodified 2642.3428 0.34276164 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.189 33.476 5 3.3043E-05 15831 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.974 83.432 602850000 107690000 87898000 86590000 0 0 0 51442000 53397000 55780000 5007500 6506900 6028500 19810000 16669000 27580000 0 0 0 27889000 24654000 20125000 0 2905200 2880700 21794 734 21122 404997;404998;404999;405000;405001;405002;405003;405004;405005;405006;405007;405008;405009;405010;405011;405012;405013 248285;248286;248287;248288;248289;248290;248291;248292;248293;248294 248292 10 VLGLELGADDYLPK Unmodified 1501.8028 0.80281033 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 46.02 44.524 2 3.3732E-06 22137 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.06 0 274790000 59415000 0 50582000 0 0 0 32982000 25986000 0 0 0 0 0 0 25588000 0 0 0 24790000 29182000 26268000 0 0 0 21795 841 21123 405014;405015;405016;405017;405018;405019;405020;405021 248295;248296;248297;248298;248299;248300;248301;248302 248295 8 VLGLELGADDYLPKPFNDR Unmodified 2131.095 0.094969603 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 50.598 49.344 2;3 5.6019E-45 24231 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 255.45 236.72 1210900000 204850000 179070000 183680000 4325500 7598800 6463900 123330000 109710000 119320000 11002000 10707000 10461000 6321600 2971300 0 32333000 33034000 49886000 86061000 5857000 4994400 6530200 5376200 6995600 21796 841 21124 405022;405023;405024;405025;405026;405027;405028;405029;405030;405031;405032;405033;405034;405035;405036;405037;405038;405039;405040;405041;405042;405043;405044;405045;405046;405047;405048;405049;405050;405051 248303;248304;248305;248306;248307;248308;248309;248310;248311;248312;248313;248314;248315;248316;248317;248318;248319;248320;248321;248322;248323;248324;248325 248321 23 VLGLELGADDYLPKPFNDRELVAR Unmodified 2699.4283 0.42826541 841 P0AE88 cpxR Transcriptional regulatory protein CpxR yes yes 0 0 2 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 48.306 47.451 4 5.0425E-07 17970 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 106.69 106.12 159420000 0 0 0 5194200 4321200 6464600 0 0 0 0 0 0 0 0 0 38615000 46196000 50216000 0 0 0 3788200 0 4621900 21797 841 21125 405052;405053;405054;405055;405056;405057;405058;405059 248326;248327;248328;248329 248326 4 VLGLGNCTIWQTSLAGK Unmodified 1816.9506 0.95055397 1495 P37757 yddE Uncharacterized isomerase YddE yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.501 47.163 2 1.0242E-08 22816 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 123.64 95.967 96907000 0 10872000 10445000 0 0 0 9358800 5765500 5981200 0 0 0 8856700 6975700 8331100 0 0 0 9615500 10036000 10670000 0 0 0 21798 1495 21126 405060;405061;405062;405063;405064;405065;405066;405067;405068;405069;405070 248330;248331;248332 248331 2 VLGSLYYR Unmodified 969.52837 0.5283668 1790 P75915 ycdY Chaperone protein YcdY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.335 26.188 2 5.4494E-05 11849 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 170.17 170.17 765540000 54551000 53271000 53369000 0 0 0 80369000 78221000 71905000 0 0 0 55856000 51518000 49225000 0 0 0 76371000 75760000 65123000 0 0 0 21799 1790 21127 405071;405072;405073;405074;405075;405076;405077;405078;405079;405080;405081;405082 248333;248334;248335;248336;248337;248338;248339;248340;248341;248342;248343;248344 248338 12 VLGTDGFGR Unmodified 920.47158 0.4715802 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 4 5 5 2 1 1 1 2 2 1 1 2 1 1 1 2 1 2 4 3 5 24.102 23.23 2 1.9691E-11 7202 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 216.01 192.04 44732000000 933370000 923400000 977520000 4761900000 4798200000 4448100000 1419800000 1317500000 1404400000 538660000 333820000 419770000 857540000 776730000 790260000 136850000 103080000 104550000 1471900000 1505800000 1451400000 5065900000 5095700000 5095600000 21800 939 21128 405083;405084;405085;405086;405087;405088;405089;405090;405091;405092;405093;405094;405095;405096;405097;405098;405099;405100;405101;405102;405103;405104;405105;405106;405107;405108;405109;405110;405111;405112;405113;405114;405115;405116;405117;405118;405119;405120;405121;405122;405123;405124;405125;405126;405127;405128;405129;405130;405131;405132;405133 248345;248346;248347;248348;248349;248350;248351;248352;248353;248354;248355;248356;248357;248358;248359;248360;248361;248362;248363;248364;248365;248366;248367;248368;248369;248370;248371;248372;248373;248374;248375;248376;248377;248378;248379;248380;248381;248382;248383;248384;248385;248386;248387;248388;248389;248390;248391;248392;248393;248394;248395 248378 49 VLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAK Unmodified 4371.0794 0.079402478 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.938 48.531 4 4.0684E-30 23676 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 175.06 174.17 294210000 24558000 19497000 17626000 0 0 0 26204000 30069000 26239000 0 0 0 23383000 16220000 23083000 0 0 0 31216000 27958000 28156000 0 0 0 21801 1900 21129 405134;405135;405136;405137;405138;405139;405140;405141;405142;405143;405144;405145 248396;248397;248398;248399;248400;248401;248402 248398 7 VLGVIALK Unmodified 811.55312 0.55312499 84 P03960 kdpB Potassium-transporting ATPase B chain yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 33.434 32.04 2 0.01232 15059 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 75.311 43.194 17502000 5601900 4160000 3794600 0 1797800 2147900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21802 84 21130 405146;405147;405148;405149;405150 248403;248404;248405 248405 2 VLHATQELVTLGLAK Unmodified 1591.9297 0.92974218 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 35.793 34.236 2;3 3.1314E-20 16267 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 247.67 243.62 2655900000 431640000 394620000 349680000 0 0 0 217650000 170280000 158880000 0 0 0 130920000 134530000 128030000 0 0 0 164700000 185340000 189660000 0 0 0 21803 1872 21131 405151;405152;405153;405154;405155;405156;405157;405158;405159;405160;405161;405162;405163;405164;405165;405166;405167;405168;405169;405170;405171;405172;405173;405174 248406;248407;248408;248409;248410;248411;248412;248413;248414;248415;248416;248417;248418;248419;248420;248421;248422;248423;248424;248425;248426;248427;248428;248429;248430 248424 25 VLHLPTVAEK Unmodified 1105.6495 0.64954457 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 1 1 2 1 1 2 1 2 22.665 22.145 2;3 0.00072189 9262 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 83.883 71.267 325100000 75600000 78765000 72143000 0 0 0 8280800 5734500 7765200 0 0 0 14246000 9263900 9017900 0 0 0 17629000 10491000 16160000 0 0 0 21804 1107 21132 405175;405176;405177;405178;405179;405180;405181;405182;405183;405184;405185;405186;405187;405188;405189;405190;405191;405192;405193 248431;248432;248433;248434;248435;248436;248437;248438;248439;248440;248441 248433 10 VLHNHSEELTLR Unmodified 1446.7579 0.75792582 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 2 1 2 2 2 3 2 2 3 3 3 3 2 3 3 3 3 1 2 13.393 13.972 2;3;4 2.8609E-08 4328 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 175.65 168.99 1354300000 116950000 101610000 110030000 0 1130900 0 70418000 66673000 108070000 6058500 4624600 3852000 80041000 73147000 69748000 86697000 60101000 61028000 122980000 127660000 77694000 2153400 3595600 0 21805 37 21133 405194;405195;405196;405197;405198;405199;405200;405201;405202;405203;405204;405205;405206;405207;405208;405209;405210;405211;405212;405213;405214;405215;405216;405217;405218;405219;405220;405221;405222;405223;405224;405225;405226;405227;405228;405229;405230;405231;405232;405233;405234;405235;405236;405237;405238;405239;405240;405241;405242;405243 248442;248443;248444;248445;248446;248447;248448;248449;248450;248451;248452;248453;248454;248455;248456;248457;248458;248459;248460;248461;248462;248463;248464;248465;248466;248467;248468 248462 23 VLHPATLLPAVR Unmodified 1285.787 0.7870411 191 P08660 lysC Lysine-sensitive aspartokinase 3 yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.06 28.704 3 0.025367 12712 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 32.999 32.999 107680000 9099200 7826100 7727300 0 0 0 17422000 14418000 13042000 0 0 0 5357600 4525200 6049800 0 0 0 6167800 8926300 7113800 0 0 0 21806 191 21134 405244;405245;405246;405247;405248;405249;405250;405251;405252;405253;405254;405255 248469;248470;248471;248472;248473;248474 248474 1 VLHPLPR Unmodified 830.51266 0.51265716 318 P0A786 pyrB Aspartate carbamoyltransferase catalytic chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 12.722 13.569 2 0.0023035 4065 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.67 62.436 4272300000 1363000000 1341300000 1288900000 0 0 0 0 0 0 0 0 0 0 22726000 24463000 0 0 0 79953000 80294000 71558000 0 0 0 21807 318 21135 405256;405257;405258;405259;405260;405261;405262;405263 248475;248476;248477;248478;248479;248480;248481 248480 7 VLHSAWLNSHYQTGLK Unmodified 1852.9584 0.95841654 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 2 3 3 4 2 2 2 3 3 2 3 2 3 23.933 23.11 2;3;4 8.9688E-19 9647 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 220.53 216.67 921980000 0 0 0 1104300 705460 1377900 4313000 0 0 7941500 8055400 6483000 194830000 209130000 225300000 24079000 25227000 19998000 51162000 43772000 53549000 15941000 14361000 14647000 21808 647 21136 405264;405265;405266;405267;405268;405269;405270;405271;405272;405273;405274;405275;405276;405277;405278;405279;405280;405281;405282;405283;405284;405285;405286;405287;405288;405289;405290;405291;405292;405293;405294;405295;405296;405297;405298;405299;405300;405301;405302;405303;405304;405305;405306 248482;248483;248484;248485;248486;248487;248488;248489;248490;248491;248492;248493;248494;248495;248496;248497;248498;248499;248500;248501;248502;248503;248504 248498 23 VLHSLEQALSK Unmodified 1223.6874 0.68738664 526 P0A9J0 rng Ribonuclease G yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 21.782 21.98 2 0.002569 9007 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 69.786 56.016 25020000 7917800 9559400 7542800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21809 526 21137 405307;405308;405309 248505 248505 1 VLHTLAGK Unmodified 837.50724 0.50723743 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.422 12.276 2 0.0015405 3021 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 108 99.314 457700000 50082000 0 0 0 0 0 42960000 45301000 46837000 0 0 0 40359000 34003000 34046000 0 0 0 56161000 58689000 49260000 0 0 0 21810 720 21138 405310;405311;405312;405313;405314;405315;405316;405317;405318;405319;405320;405321 248506;248507;248508;248509;248510;248511;248512 248511 7 VLHVIPQEYAIDYQEGIK Unmodified 2114.1048 0.10480601 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.596 37.028 3 2.7635E-07 18039 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.796 93.343 479470000 27376000 27459000 27521000 0 0 0 42052000 46016000 36514000 3296200 3669600 5484100 36410000 27045000 32514000 974530 800180 860240 48925000 54231000 56889000 0 656190 781650 21811 656 21139 405322;405323;405324;405325;405326;405327;405328;405329;405330;405331;405332;405333;405334;405335;405336;405337;405338;405339;405340;405341 248513;248514;248515;248516;248517;248518;248519;248520;248521 248516 5 VLHVIPQEYAIDYQEGIKNPVGLSGVR Unmodified 2993.5975 0.597456 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.135 40.476 4 1.1348E-10 14323 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 112.74 111.65 193780000 0 0 0 14659000 12632000 10465000 0 0 0 20564000 20908000 23529000 0 5855400 3824700 0 6376900 8525700 6031700 8656600 7949500 17706000 15092000 11002000 21812 656 21140 405342;405343;405344;405345;405346;405347;405348;405349;405350;405351;405352;405353;405354;405355;405356;405357 248522;248523;248524;248525;248526;248527;248528 248526 7 VLIASIMGENEQQWEELAR Unmodified 2215.0943 0.094317676 1276 P25889 preA NAD-dependent dihydropyrimidine dehydrogenase subunit PreA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 2 2 1 53.474 52.016 2;3 3.6284E-81 25801 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 331.42 316.74 298600000 0 0 0 0 0 0 80160000 81279000 83657000 0 0 0 17729000 15994000 16258000 0 0 0 0 0 3524100 0 0 0 21813 1276 21141 405358;405359;405360;405361;405362;405363;405364;405365;405366;405367;405368;405369;405370;405371 248529;248530;248531;248532;248533;248534;248535;248536;248537 248532 6 VLICAAGK Unmodified 830.46841 0.46840908 1475 P37617 zntA Lead, cadmium, zinc and mercury-transporting ATPase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 16.487 16.504 2 0.026201 4790 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 64.803 55.79 16738000 0 0 0 0 0 0 0 0 0 5609000 5669900 0 0 0 0 0 2143500 0 0 0 0 1575200 1740100 0 21814 1475 21142 405372;405373;405374;405375;405376 248538;248539 248538 2 VLIDEHQMSWDDAWAITSK Unmodified 2244.0521 0.05211851 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 1 1 1 2 2 2 2 2 2 47.704 46.209 2;3 1.0386E-36 23007 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 233.28 230.64 1117800000 32144000 40196000 27075000 0 0 0 115160000 118050000 99334000 64383000 61077000 60729000 77220000 74670000 60575000 0 0 0 93903000 96989000 96347000 0 0 0 21815 30 21143 405377;405378;405379;405380;405381;405382;405383;405384;405385;405386;405387;405388;405389;405390;405391;405392;405393;405394;405395;405396;405397;405398;405399;405400;405401 248540;248541;248542;248543;248544;248545;248546;248547;248548;248549;248550;248551;248552;248553;248554;248555;248556;248557;248558;248559 248543 20 VLIEATSNQVNQFGGYTGMTPADFR Unmodified 2715.2963 0.29626496 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 2 2 1 3 3 3 1 1 2 3 4 3 1 1 1 3 3 3 1 1 48.971 47.681 2;3;4 8.6687E-84 23621 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 387.15 383.05 3766900000 248480000 188660000 190940000 13742000 12994000 1638000 498380000 482020000 441600000 4658800 17459000 17960000 283510000 263800000 277540000 3239200 4662700 2662800 267500000 275580000 243570000 16244000 10046000 0 21816 1046 21144 405402;405403;405404;405405;405406;405407;405408;405409;405410;405411;405412;405413;405414;405415;405416;405417;405418;405419;405420;405421;405422;405423;405424;405425;405426;405427;405428;405429;405430;405431;405432;405433;405434;405435;405436;405437;405438;405439;405440;405441;405442;405443;405444;405445;405446;405447;405448;405449;405450;405451 248560;248561;248562;248563;248564;248565;248566;248567;248568;248569;248570;248571;248572;248573;248574;248575;248576;248577;248578;248579;248580;248581;248582;248583;248584;248585;248586;248587;248588;248589;248590;248591 248564 32 VLIENLK Unmodified 827.51165 0.5116541 1508 P39160 uxuB D-mannonate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.156 23.26 2 0.0025188 10001 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.81 47.537 410750000 53721000 59733000 45553000 0 0 0 37471000 37149000 34251000 0 0 0 24707000 21162000 22544000 0 0 0 26020000 25927000 22517000 0 0 0 21817 1508 21145 405452;405453;405454;405455;405456;405457;405458;405459;405460;405461;405462;405463 248592;248593;248594;248595;248596;248597;248598;248599;248600;248601 248598 7 VLIEQAIEQPLDPQR Unmodified 1747.9468 0.9468488 1410 P33218 yebE Inner membrane protein YebE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.769 39.89 2 1.996E-20 19507 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 218.18 189.23 129060000 5878100 6155200 5284300 2466200 2309300 2289300 12778000 9626600 8711100 5879700 5337300 5031100 6916300 5497600 7481100 0 0 0 9126500 10375000 8904700 3217600 2888000 2907600 21818 1410 21146 405464;405465;405466;405467;405468;405469;405470;405471;405472;405473;405474;405475;405476;405477;405478;405479;405480;405481;405482;405483;405484 248602;248603;248604;248605;248606;248607;248608;248609;248610;248611;248612 248610 7 VLIEQMR Unmodified 887.48987 0.48987281 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 22.064 22.1 2 0.00023343 9158 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 163.34 138.34 1071900000 90650000 91716000 79703000 771950 0 0 93520000 98245000 101120000 0 0 0 74935000 58101000 67541000 0 0 0 106620000 114530000 94409000 0 0 0 21819 1215 21147 405485;405486;405487;405488;405489;405490;405491;405492;405493;405494;405495;405496;405497 248613;248614;248615;248616;248617;248618;248619;248620;248621;248622;248623 248615 11 VLIIVPETLQHQWLVEMLR Oxidation (M) 2332.2977 0.29770893 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 5 6 6 2 2 2 53.115 52.439 2;3 1.4709E-14 19926 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 152.37 152.37 1094300000 0 0 0 0 0 0 0 0 0 185140000 126780000 130740000 0 0 0 128240000 119330000 208260000 0 0 0 60239000 69303000 66314000 21820 1616 21148 405498;405499;405500;405501;405502;405503;405504;405505;405506;405507;405508;405509;405510;405511;405512;405513;405514;405515;405516;405517;405518;405519;405520;405521;405522;405523;405524;405525;405526;405527;405528;405529;405530 248624;248625;248626;248627;248628;248629;248630;248631;248632;248633;248634;248635;248636;248637;248638;248639;248640;248641;248642;248643;248644;248645;248646 248634 573 20 VLIIVPETLQHQWLVEMLR Unmodified 2316.3028 0.30279431 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 4 4 4 1 1 2 3 3 3 2 2 2 4 3 4 54.825 53.652 2;3;4 2.6979E-23 21265 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 198.07 195.14 29941000000 52153000 50497000 44176000 0 1996100 0 53036000 69156000 53019000 2178600000 1904400000 1778800000 54611000 48237000 52949000 4938600000 6464200000 7583700000 93130000 90075000 81288000 1477700000 1432800000 1437600000 21821 1616 21148 405531;405532;405533;405534;405535;405536;405537;405538;405539;405540;405541;405542;405543;405544;405545;405546;405547;405548;405549;405550;405551;405552;405553;405554;405555;405556;405557;405558;405559;405560;405561;405562;405563;405564;405565;405566;405567;405568;405569;405570;405571;405572;405573;405574;405575;405576;405577;405578;405579 248647;248648;248649;248650;248651;248652;248653;248654;248655;248656;248657;248658;248659;248660;248661;248662;248663;248664;248665;248666;248667;248668;248669;248670;248671;248672;248673;248674;248675;248676;248677;248678;248679 248647 33 VLIIVPETLQHQWLVEMLRR Unmodified 2472.4039 0.40390534 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 6 3 3 2 4 4 4 52.921 51.84 3;4 7.7848E-31 20953 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 222.7 221.63 8449900000 0 0 0 0 0 0 0 0 0 836200000 690000000 614370000 0 0 0 1011400000 1931000000 1862300000 0 0 0 582520000 463810000 458140000 21822 1616 21149 405580;405581;405582;405583;405584;405585;405586;405587;405588;405589;405590;405591;405592;405593;405594;405595;405596;405597;405598;405599;405600;405601;405602;405603;405604;405605;405606;405607;405608;405609;405610;405611;405612;405613 248680;248681;248682;248683;248684;248685;248686;248687;248688;248689;248690;248691;248692;248693;248694;248695;248696;248697;248698;248699 248692 19 VLIIVPETLQHQWLVEMLRR Oxidation (M) 2488.3988 0.39881996 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 48.278 47.541 4 0.0028039 16672 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 54.974 54.974 61057000 0 0 0 0 0 0 0 0 0 11740000 9350100 0 0 0 0 0 10570000 21026000 0 0 0 8370600 0 0 21823 1616 21149 405614;405615;405616;405617;405618;405619 248700;248701;248702;248703 248700 573 4 VLILDEPTR Unmodified 1054.6023 0.60226003 100 P04983 rbsA Ribose import ATP-binding protein RbsA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 29.603 28.201 2 0.012398 12604 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 70.919 0 45033000 6494300 5264200 5121700 1457200 1440400 1751800 0 0 0 1344200 1625700 0 6711700 6488100 7334300 0 0 0 0 0 0 0 0 0 21824 100 21150 405620;405621;405622;405623;405624;405625;405626;405627;405628;405629;405630 248704;248705;248706;248707;248708 248706 1 VLILNLMPK Unmodified 1039.6464 0.64637345 163 P07623 metA Homoserine O-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 47.242 45.781 2 0.0033817 22662 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 81.784 68.795 43267000 6542200 4802200 6460800 0 0 0 9732300 6526600 7612600 0 0 0 1590600 0 0 0 0 0 0 0 0 0 0 0 21825 163 21151 405631;405632;405633;405634;405635;405636;405637 248709;248710;248711;248712;248713 248710 5 VLITYGGGSVK Unmodified 1092.6179 0.61791009 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.322 23.35 2 0.00012618 10537 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.86 102.9 1515400000 74590000 56437000 58092000 454930 648480 0 178000000 169330000 167250000 0 911200 980950 137340000 148710000 127210000 0 0 0 137900000 137910000 119600000 0 0 0 21826 1959 21152 405638;405639;405640;405641;405642;405643;405644;405645;405646;405647;405648;405649;405650;405651;405652;405653 248714;248715;248716;248717;248718;248719;248720;248721;248722;248723;248724;248725 248714 11 VLKDDNLLALFDIPK Unmodified 1712.9713 0.97127264 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 53.27 51.837 3 0.00074708 25604 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.511 63.631 363860000 30376000 29954000 31388000 0 808340 0 29768000 31358000 34764000 0 0 0 31614000 29263000 30831000 0 0 0 27567000 27996000 28173000 0 0 0 21827 880 21153 405654;405655;405656;405657;405658;405659;405660;405661;405662;405663;405664;405665;405666 248726;248727;248728;248729;248730;248731;248732;248733;248734;248735;248736;248737 248732 12 VLKEESKK Unmodified 959.56515 0.56514624 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 4.2138 5.1504 2 0.0123 803 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 95.909 31.152 21840000 0 0 0 0 0 205130 6504200 7007200 5966300 0 0 0 0 0 2157600 0 0 0 0 0 0 0 0 0 21828 520 21154 405667;405668;405669;405670;405671 248738;248739;248740 248738 3 VLKPGGR Unmodified 725.45481 0.45480793 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 2 3 3 1 1 1 1 1 2 1 1 1 8.2835 9.0644 2 0.011337 1028 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 94.95 94.95 455220000 55255000 43443000 65337000 9412100 7364100 9181300 21416000 18331000 22007000 25152000 17305000 0 14839000 14081000 12411000 0 0 0 35653000 31470000 45164000 7400300 0 0 21829 408 21155 405672;405673;405674;405675;405676;405677;405678;405679;405680;405681;405682;405683;405684;405685;405686;405687;405688;405689;405690;405691;405692;405693;405694;405695 248741;248742;248743;248744;248745;248746;248747;248748;248749;248750;248751 248744 11 VLKPYVDSGK Unmodified 1104.6179 0.61791009 1470 P37387 xylF D-xylose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 13.147 13.846 2 0.0005869 4165 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.48 101.81 93938000 33277000 27748000 32914000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21830 1470 21156 405696;405697;405698 248752;248753;248754 248754 3 VLLADEVGLGK Unmodified 1112.6441 0.64412484 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 2 1 2 1 1 1 1 35.884 34.463 1;2 2.7428E-08 12626 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 179.37 162.28 16788000000 66616000 64255000 53769000 1700500 2146900 2533500 61140000 64304000 56714000 1629900000 1510500000 1596600000 61261000 54486000 48865000 3025200000 2149000000 2163900000 81599000 81581000 64640000 1367400000 1325000000 1255100000 21831 1616 21157 405699;405700;405701;405702;405703;405704;405705;405706;405707;405708;405709;405710;405711;405712;405713;405714;405715;405716;405717;405718;405719;405720;405721;405722;405723;405724;405725;405726;405727 248755;248756;248757;248758;248759;248760;248761;248762;248763;248764;248765;248766;248767;248768;248769;248770;248771;248772;248773;248774;248775;248776 248756 22 VLLCDEATSALDPATTR Unmodified 1831.8986 0.89857798 1346 P30750 metN Methionine import ATP-binding protein MetN yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 2 2 2 2 1 1 2 2 1 2 2 2 2 2 38.664 36.777 2;3 9.6831E-14 18136 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.18 155.84 152110000 6890300 6023400 6554200 2239000 2162000 2050900 10842000 16915000 15867000 8715800 8097000 2688600 6570200 7034000 9719100 0 0 0 9616100 12534000 9295900 2949800 2448500 2897400 21832 1346 21158 405728;405729;405730;405731;405732;405733;405734;405735;405736;405737;405738;405739;405740;405741;405742;405743;405744;405745;405746;405747;405748;405749;405750;405751;405752;405753;405754;405755;405756;405757;405758;405759;405760;405761;405762 248777;248778;248779;248780;248781;248782;248783;248784;248785 248782 9 VLLDALK Unmodified 770.49019 0.49019038 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.224 29.83 2 0.0053719 11416 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 99.919 22.171 229710000 5547800 6195400 5019600 1459600 1526100 1283600 14523000 18683000 14568000 760010 15176000 16364000 9861900 11279000 10150000 4879400 4034400 4152400 19763000 20698000 20933000 7969900 7717900 7161500 21833 143 21159 405763;405764;405765;405766;405767;405768;405769;405770;405771;405772;405773;405774;405775;405776;405777;405778;405779;405780;405781;405782;405783;405784;405785;405786 248786;248787;248788;248789;248790 248789 5 VLLDNATATINPGQK Unmodified 1553.8413 0.8413211 1664 P63389 yheS Uncharacterized ABC transporter ATP-binding protein YheS yes yes 0 0 0 By MS/MS 1 30.265 29.113 2 0.00082648 13113 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 99.506 77.42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21834 1664 21160 405787 248791 248791 1 VLLDPAR Unmodified 782.46504 0.46503826 1612 P55135 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 20.111 20.592 2 0.062312 8163 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 60.788 21.969 43600000 7587700 0 5690700 0 0 0 0 0 0 0 0 0 5921000 0 0 0 0 0 16279000 8121500 0 0 0 0 21835 1612 21161 405788;405789;405790;405791;405792 248792;248793;248794 248793 3 VLLEIADLK Unmodified 1012.6168 0.61684746 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.04 40.408 2 0.00030936 19668 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 117.04 61.025 716140000 100830000 90783000 82556000 32306000 31690000 29958000 26682000 24292000 23289000 22884000 25895000 24018000 19040000 17829000 24685000 7324600 5406100 5114300 29429000 32807000 26278000 10860000 10763000 11424000 21836 1935 21162 405793;405794;405795;405796;405797;405798;405799;405800;405801;405802;405803;405804;405805;405806;405807;405808;405809;405810;405811;405812;405813;405814;405815;405816 248795;248796;248797;248798;248799;248800;248801;248802;248803;248804;248805;248806;248807;248808;248809;248810;248811;248812;248813;248814;248815;248816 248806 22 VLLENLLR Unmodified 968.60187 0.6018661 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.246 41.539 2 2.2375E-06 20242 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 187.14 131.12 2332200000 575980000 518470000 529920000 1386100 1879900 1258300 151710000 133550000 125960000 2226600 2329900 2420900 22140000 21966000 20507000 0 0 0 67733000 75619000 77129000 0 0 0 21837 1254 21163 405817;405818;405819;405820;405821;405822;405823;405824;405825;405826;405827;405828;405829;405830;405831;405832;405833;405834 248817;248818;248819;248820;248821;248822;248823;248824;248825;248826;248827;248828;248829;248830 248821 14 VLLFGQAIQTAGTVK Unmodified 1544.8926 0.89262839 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 43.791 42.297 2;3 6.9602E-15 19870 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 220.25 182.56 1093900000 79255000 69111000 75462000 0 0 0 70253000 69750000 74568000 0 0 0 83089000 81315000 80187000 0 0 0 142480000 135200000 133250000 0 0 0 21838 346 21164 405835;405836;405837;405838;405839;405840;405841;405842;405843;405844;405845;405846;405847;405848;405849;405850;405851;405852;405853;405854;405855;405856;405857 248831;248832;248833;248834;248835;248836;248837;248838;248839;248840;248841;248842;248843;248844;248845;248846;248847 248842 17 VLLGENK Unmodified 771.44905 0.44905385 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.262 15.046 2 0.049644 4878 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 77.748 67.442 265430000 50936000 47430000 39812000 680060 0 0 14606000 14479000 14819000 0 0 0 10348000 10909000 10382000 0 0 0 16551000 17522000 16961000 0 0 0 21839 49 21165 405858;405859;405860;405861;405862;405863;405864;405865;405866;405867;405868;405869;405870 248848 248848 0 VLLGVAGFQAR Unmodified 1129.6608 0.66077796 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 3 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 3 1 1 1 37.879 36.246 2;3 1.7876E-05 17520 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 163.77 159.84 2508700000 288710000 255520000 228020000 4664200 4497700 5156500 190950000 207590000 190930000 4188900 3547200 3385100 158730000 152030000 161030000 1457600 1177600 1075500 216500000 204300000 218230000 3054500 1780500 2164700 21840 784 21166 405871;405872;405873;405874;405875;405876;405877;405878;405879;405880;405881;405882;405883;405884;405885;405886;405887;405888;405889;405890;405891;405892;405893;405894;405895;405896;405897;405898;405899;405900;405901;405902;405903;405904;405905;405906;405907;405908 248849;248850;248851;248852;248853;248854;248855;248856;248857;248858;248859;248860;248861;248862;248863;248864;248865;248866;248867 248855 16 VLLHLIDIDPIDGTDPVENAR Unmodified 2314.2169 0.21687565 1560 P42641 obgE GTPase ObgE/CgtA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 51.047 49.763 3 3.2408E-07 24312 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.5 101.84 144040000 19541000 15764000 16760000 1177700 0 0 15460000 11839000 12411000 0 0 0 7804000 0 0 0 0 0 18494000 13426000 11361000 0 0 0 21841 1560 21167 405909;405910;405911;405912;405913;405914;405915;405916;405917;405918;405919 248868;248869;248870;248871 248869 4 VLLLDEITSALDESNKHNVNEMIHR Unmodified 2889.4655 0.46545555 1891 P77279 fetA Probable iron export ATP-binding protein FetA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.585 48.21 5 7.6681E-41 23948 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 175.77 173.36 196710000 11546000 10265000 7405300 0 3525900 3286100 20183000 18553000 16106000 0 4106300 4754200 13833000 11117000 17778000 0 0 0 18219000 14356000 11512000 2921600 2490100 4748400 21842 1891 21168 405920;405921;405922;405923;405924;405925;405926;405927;405928;405929;405930;405931;405932;405933;405934;405935;405936;405937;405938 248872;248873;248874;248875;248876;248877;248878;248879 248872 8 VLLLDNLSDYIK Unmodified 1404.7864 0.78643198 446 P0A8M6 yeeX UPF0265 protein YeeX yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.836 52.396 2 0.00022162 26070 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 98.249 97.421 715410000 87834000 89042000 75295000 0 0 0 62832000 62047000 55438000 0 0 0 44254000 44732000 42800000 0 0 0 48528000 47873000 54730000 0 0 0 21843 446 21169 405939;405940;405941;405942;405943;405944;405945;405946;405947;405948;405949;405950 248880;248881;248882;248883 248880 0 VLLLDNLSDYIKPGMSVEAIQGIIASMK Unmodified 3017.6181 0.61811637 446 P0A8M6 yeeX UPF0265 protein YeeX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 2 2 3 2 2 2 2 2 2 2 2 1 1 1 2 1 2 2 2 2 55.863 54.529 3;4 7.6772E-23 21862 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 168.96 156.52 6735300000 130210000 801590000 129300000 34020000 34393000 35801000 914170000 145780000 872500000 310910000 224650000 228750000 493550000 579740000 546680000 69321000 63793000 134650000 605520000 97833000 95791000 49786000 66540000 69969000 21844 446 21170 405951;405952;405953;405954;405955;405956;405957;405958;405959;405960;405961;405962;405963;405964;405965;405966;405967;405968;405969;405970;405971;405972;405973;405974;405975;405976;405977;405978;405979;405980;405981;405982;405983;405984;405985;405986;405987;405988;405989;405990;405991;405992;405993;405994 248884;248885;248886;248887;248888;248889;248890;248891;248892;248893;248894;248895;248896;248897;248898;248899;248900;248901;248902;248903;248904;248905;248906;248907;248908;248909;248910;248911;248912;248913;248914;248915;248916;248917 248898 34 VLLLPHYR Unmodified 1009.6073 0.60728582 1998 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 44.269 42.739 2 0.15119 19834 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 48.761 48.761 12980000 2551700 0 1339800 0 0 0 1925600 2371400 0 0 0 0 0 0 1179400 0 0 0 0 1923600 1688800 0 0 0 + 21845 1998 21171 405995;405996;405997;405998;405999;406000;406001 248918 248918 0 VLLPAFPDIR Unmodified 1139.6703 0.67028001 282 P0A6U8 glgA Glycogen synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.762 48.418 2 0.00031842 24052 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 110.87 110.87 169070000 6916600 6553400 7309200 2362600 2097500 2123300 34789000 33352000 32581000 3642700 3504500 3531900 6444900 5478700 5790000 0 854400 0 5117600 2855200 3770200 0 0 0 21846 282 21172 406002;406003;406004;406005;406006;406007;406008;406009;406010;406011;406012;406013;406014;406015;406016;406017;406018;406019;406020 248919;248920;248921;248922;248923;248924;248925;248926;248927;248928 248922 9 VLLQLALTQTK Unmodified 1226.7598 0.7598233 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 2 2 2 2 1 2 1 40.897 39.076 2;3 4.8625E-06 19375 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 179.51 172.23 3531100000 8361300 9095800 8715400 0 0 0 635570000 525370000 528380000 1319900 1108900 1107100 341460000 343160000 335020000 0 0 0 270900000 272420000 248490000 0 0 651470 21847 40 21173 406021;406022;406023;406024;406025;406026;406027;406028;406029;406030;406031;406032;406033;406034;406035;406036;406037;406038;406039;406040;406041;406042;406043;406044 248929;248930;248931;248932;248933;248934;248935;248936;248937;248938;248939;248940;248941;248942;248943;248944;248945;248946;248947;248948;248949;248950;248951 248932 23 VLLTGER Unmodified 786.45995 0.45995289 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.749 16.257 2 0.011473 5707 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.98 8.3109 318850000 4689200 120680000 5409000 0 0 0 9615500 10663000 7937500 1313300 3248600 5771800 3919300 4533800 3853000 29771000 20795000 23571000 7115800 4731100 40161000 5049900 0 6020000 21848 1334 21174 406045;406046;406047;406048;406049;406050;406051;406052;406053;406054;406055;406056;406057;406058;406059;406060;406061;406062;406063;406064 248952 248952 0 VLLTLEELELPYEQILAGR Unmodified 2198.2198 0.21983577 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.702 54.229 2;3 2.4199E-45 26635 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 259.48 256.92 999340000 166690000 172150000 142340000 0 0 0 52836000 54728000 64787000 0 0 0 54360000 55495000 51936000 0 0 0 56139000 65327000 62546000 0 0 0 21849 713 21175 406065;406066;406067;406068;406069;406070;406071;406072;406073;406074;406075;406076;406077;406078;406079;406080;406081;406082;406083;406084;406085;406086;406087;406088 248953;248954;248955;248956;248957;248958;248959;248960;248961;248962;248963;248964 248956 12 VLLVGQSPNAELSAR Unmodified 1552.8573 0.85730551 1692 P64596 yraP Uncharacterized protein YraP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.83 31.368 2 4.7686E-15 14806 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 190.15 164.94 346070000 24872000 18072000 16391000 4699400 4049800 4109000 23620000 21017000 17503000 11820000 13244000 11308000 22239000 16463000 18806000 3147800 1885800 2023000 29006000 33005000 28049000 6772300 6969500 7002800 21850 1692 21176 406089;406090;406091;406092;406093;406094;406095;406096;406097;406098;406099;406100;406101;406102;406103;406104;406105;406106;406107;406108;406109;406110;406111;406112 248965;248966;248967;248968;248969;248970;248971;248972;248973;248974;248975;248976;248977;248978;248979;248980;248981;248982;248983;248984;248985 248976 13 VLLVQGTAFNWPWPDHFR Unmodified 2182.1112 0.11122879 491 P0A959 alaA Glutamate-pyruvate aminotransferase AlaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.533 52.306 3 4.9565E-14 25799 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 146.78 145.42 489170000 47813000 47204000 47416000 2170100 0 0 38876000 24093000 24507000 4312300 6120600 5128700 33761000 35369000 27783000 3106000 1854000 2136800 39445000 45873000 39792000 3711500 4004600 4697100 21851 491 21177 406113;406114;406115;406116;406117;406118;406119;406120;406121;406122;406123;406124;406125;406126;406127;406128;406129;406130;406131;406132;406133;406134 248986;248987;248988;248989;248990;248991;248992 248988 7 VLMGSMHTGLEEYPDGAER Unmodified 2090.9401 0.94012522 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 30.282 29.143 3 7.2462E-10 13483 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.6 114.74 98475000 34066000 35032000 29377000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21852 1554 21178 406135;406136;406137 248993;248994 248994 2 VLMQAQQALLNAEIDQQR Unmodified 2068.0735 0.073522654 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 42.983 41.364 3 0.0029228 14631 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 55.912 48.962 27669000 0 0 0 9958200 9688000 8022900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21853 1899 21179 406138;406139;406140 248995;248996 248995 2 VLMQAQQALLNAEIDQQRK Unmodified 2196.1685 0.16848567 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.264 34.646 3 1.5789E-14 12136 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 134.37 131.18 176860000 0 0 0 23860000 22989000 28460000 9125600 8533600 0 10806000 9233500 11951000 0 0 0 4190600 2515600 2379800 0 0 0 12473000 15303000 15041000 21854 1899 21180 406141;406142;406143;406144;406145;406146;406147;406148;406149;406150;406151;406152;406153;406154 248997;248998;248999;249000;249001;249002;249003;249004;249005;249006;249007 249007 11 VLMQDFTGVPAVVDLAAMR Unmodified 2032.0486 0.048553457 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.938 53.454 3 6.8993E-05 26616 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.239 74.207 374820000 104480000 79303000 99216000 0 0 0 22557000 14341000 18817000 0 0 0 0 6491100 5635300 0 0 0 8016100 7548500 8415000 0 0 0 21855 1254 21181 406155;406156;406157;406158;406159;406160;406161;406162;406163;406164;406165 249008;249009 249008 2 VLMSYGFTTIVR Unmodified 1385.7377 0.73770765 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.395 43.42 2 0.00028463 21131 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 107.24 97.91 30710000 0 0 0 1231000 0 1156300 0 0 0 5997700 5444000 5401500 0 0 0 0 0 0 0 0 0 4085500 3700300 3693300 21856 1451 21182 406166;406167;406168;406169;406170;406171;406172;406173;406174;406175;406176 249010;249011;249012;249013 249011 3 VLMTYLKPVLPK Unmodified 1400.8465 0.84652982 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.332 35.48 3 0.0011632 16950 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.262 65.905 249610000 23566000 13423000 18389000 1361900 955840 1055500 20694000 20057000 20573000 2901400 2884300 2799100 15024000 16389000 14898000 0 0 0 23309000 23818000 24047000 1901800 0 1559700 21857 60 21183 406177;406178;406179;406180;406181;406182;406183;406184;406185;406186;406187;406188;406189;406190;406191;406192;406193;406194;406195;406196 249014;249015;249016 249014 3 VLMVSSHTQDGLKPLEEALTGR Unmodified 2380.242 0.24204455 1519 P39286 rsgA Putative ribosome biogenesis GTPase RsgA yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 2 1 2 2 41.73 40.105 3;4 5.0249E-10 19457 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.5 112.49 362410000 40759000 39437000 41000000 0 0 0 9587700 0 31048000 0 0 0 33275000 28805000 32891000 0 0 0 8286000 47464000 49856000 0 0 0 21858 1519 21184 406197;406198;406199;406200;406201;406202;406203;406204;406205;406206;406207;406208;406209;406210;406211;406212;406213;406214;406215;406216 249017;249018;249019 249019 2 VLNAMGTGVQLLSK Unmodified 1429.7963 0.79628516 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 38.857 37.507 2 3.5234E-06 18693 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 119.39 116.27 324330000 0 0 0 0 0 0 54988000 60670000 50347000 0 0 0 29848000 26202000 27034000 5221800 3497700 5046000 18921000 19273000 17692000 5593300 0 0 21859 500 21185 406217;406218;406219;406220;406221;406222;406223;406224;406225;406226;406227;406228;406229 249020;249021;249022;249023;249024;249025 249020 6 VLNDDPTLNVK Unmodified 1226.6507 0.65066678 131 P06846 ebgR HTH-type transcriptional regulator EbgR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.834 22.937 2 1.4383E-05 9944 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142.43 132.16 111440000 13881000 10448000 10623000 0 0 0 9307400 8850700 10389000 0 0 0 5749100 6133700 6546100 0 0 0 10146000 9821600 9544900 0 0 0 21860 131 21186 406230;406231;406232;406233;406234;406235;406236;406237;406238;406239;406240;406241 249026;249027;249028;249029 249027 4 VLNEDGLR Unmodified 914.48214 0.48214489 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.85 17.404 2 0.0026172 5717 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 98.997 72.888 184680000 0 0 0 720430 0 0 17370000 14995000 14652000 1975900 0 0 18127000 16722000 15974000 621780 384520 0 25253000 30423000 26571000 0 885210 0 21861 303 21187 406242;406243;406244;406245;406246;406247;406248;406249;406250;406251;406252;406253;406254;406255;406256 249030;249031;249032;249033;249034;249035 249035 5 VLNEMAADDALSEAVR Unmodified 1702.8196 0.81959938 440 P0A8K5 yaeP UPF0253 protein YaeP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 38.807 37.133 2;3 2.7431E-18 17880 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 218.85 215.32 904810000 142160000 121270000 118000000 0 0 0 76960000 73799000 68260000 0 0 0 56680000 56204000 57044000 0 0 0 45827000 45458000 43158000 0 0 0 21862 440 21188 406257;406258;406259;406260;406261;406262;406263;406264;406265;406266;406267;406268;406269;406270;406271;406272;406273;406274;406275;406276;406277;406278;406279;406280 249036;249037;249038;249039;249040;249041;249042;249043;249044;249045 249043 8 VLNEMAADDALSEAVR Oxidation (M) 1718.8145 0.814514 440 P0A8K5 yaeP UPF0253 protein YaeP yes yes 0 1 0 By MS/MS 1 35.402 34.044 2 0.042417 16295 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 42.041 36.196 7316600 0 0 7316600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21863 440 21188 406281 249046 249046 0 VLNEVTHYYLTK Unmodified 1478.7769 0.77692993 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 1 2 26.882 25.678 2;3 1.8021E-05 11648 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 132.32 90.132 274520000 0 2815500 2858000 3195600 3327200 1840300 31407000 25719000 26671000 13583000 9945400 6185600 16732000 4140600 14045000 2903200 2307200 3214100 30820000 30014000 30657000 3161300 8978100 0 21864 1365 21189 406282;406283;406284;406285;406286;406287;406288;406289;406290;406291;406292;406293;406294;406295;406296;406297;406298;406299;406300;406301;406302;406303;406304;406305;406306;406307;406308;406309;406310;406311;406312;406313 249047;249048;249049;249050;249051;249052;249053;249054;249055;249056 249051 9 VLNFPQSNLCLK Unmodified 1431.7544 0.75442035 156 P07102 appA Periplasmic AppA protein;Phosphoanhydride phosphohydrolase;4-phytase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 39.462 37.309 2 0.00025022 18455 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 100.48 83.003 44732000 0 0 0 0 0 0 15586000 14217000 14929000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21865 156 21190 406314;406315;406316 249057;249058 249058 0 VLNIFPSIDTGVCAASVR Unmodified 1917.9982 0.99823245 400 P0A862 tpx Thiol peroxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 1 51.048 49.772 2;3 3.9412E-29 24222 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 214.81 180.93 18021000000 1572100000 1557100000 1521500000 3369600 2901900 3486900 1571400000 1565400000 1466400000 0 2379700 0 1246500000 1317800000 1325300000 0 0 0 1639900000 1710400000 1510800000 2564200 1832100 0 21866 400 21191 406317;406318;406319;406320;406321;406322;406323;406324;406325;406326;406327;406328;406329;406330;406331;406332;406333;406334;406335;406336;406337;406338;406339;406340;406341;406342;406343;406344;406345;406346 249059;249060;249061;249062;249063;249064;249065;249066;249067;249068;249069;249070;249071;249072;249073;249074;249075;249076;249077;249078;249079;249080;249081;249082;249083;249084;249085;249086;249087;249088 249075 30 VLNLCDK Unmodified 860.44259 0.44258826 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.832 18.313 2 0.0047017 6804 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 102.71 48.188 634190000 58354000 58167000 48770000 2805900 2323400 2884600 143140000 119320000 104000000 4694500 4014800 3103600 0 0 0 0 0 0 0 42468000 40137000 0 0 0 21867 1662 21192 406347;406348;406349;406350;406351;406352;406353;406354;406355;406356;406357;406358;406359;406360 249089;249090;249091;249092;249093;249094 249089 6 VLNLLEMPR Unmodified 1083.6111 0.61105057 591 P0AAF6 artP Arginine transport ATP-binding protein ArtP yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.796 41.007 2 0.0051082 16543 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 83.265 59.836 138980000 20286000 20822000 18653000 4591300 4385200 4708300 0 0 0 2774000 3241900 3911800 8262400 8353300 10322000 0 0 0 9682700 9252200 9733100 0 0 0 21868 591 21193 406361;406362;406363;406364;406365;406366;406367;406368;406369;406370;406371;406372;406373;406374;406375 249095;249096;249097;249098 249096 0 VLNNEIILVTCGSAFK Unmodified 1776.9444 0.94440596 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 4 2 2 2 4 6 3 2 2 2 3 3 4 1 1 2 5 6 4 2 2 2 46.994 45.568 2;3 1.1497E-23 22324 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 250.67 247.14 16930000000 1512600000 1404600000 1235900000 17217000 17864000 16660000 1257800000 1175900000 1127900000 18090000 20400000 17079000 1340800000 1196000000 1232300000 3430300 3410600 7567800 1792100000 1825100000 1669100000 13406000 12403000 12825000 21869 264 21194 406376;406377;406378;406379;406380;406381;406382;406383;406384;406385;406386;406387;406388;406389;406390;406391;406392;406393;406394;406395;406396;406397;406398;406399;406400;406401;406402;406403;406404;406405;406406;406407;406408;406409;406410;406411;406412;406413;406414;406415;406416;406417;406418;406419;406420;406421;406422;406423;406424;406425;406426;406427;406428;406429;406430;406431;406432;406433;406434;406435;406436;406437;406438;406439;406440;406441;406442;406443;406444;406445;406446;406447;406448 249099;249100;249101;249102;249103;249104;249105;249106;249107;249108;249109;249110;249111;249112;249113;249114;249115;249116;249117;249118;249119;249120;249121;249122;249123;249124;249125;249126;249127;249128;249129;249130;249131;249132;249133;249134;249135;249136;249137;249138;249139;249140;249141;249142;249143;249144;249145;249146;249147;249148;249149;249150;249151;249152;249153;249154;249155;249156;249157;249158;249159;249160;249161;249162;249163;249164;249165;249166;249167;249168;249169 249112 64 VLNNGDLGENK Unmodified 1171.5833 0.5833155 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 1 2 2 2 13.898 14.66 2 2.2923E-10 4673 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 191.16 181.09 2663800000 213090000 184350000 180560000 0 0 0 272290000 286820000 259070000 2100200 1703100 0 197570000 203520000 196600000 0 0 0 222660000 222050000 221450000 0 0 0 21870 771 21195 406449;406450;406451;406452;406453;406454;406455;406456;406457;406458;406459;406460;406461;406462;406463;406464;406465;406466 249170;249171;249172;249173;249174;249175;249176;249177;249178;249179;249180 249173 11 VLNQFDDAGIVTR Unmodified 1446.7467 0.74669243 503 P0A9A9 fur Ferric uptake regulation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.693 32.232 2 1.3319E-17 15153 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 215.89 208.25 5034500000 452430000 400690000 376420000 31937000 31748000 27290000 364250000 373680000 338150000 62045000 56130000 56734000 344280000 351820000 320800000 24106000 14405000 16116000 386200000 434350000 438060000 44498000 44225000 44148000 21871 503 21196 406467;406468;406469;406470;406471;406472;406473;406474;406475;406476;406477;406478;406479;406480;406481;406482;406483;406484;406485;406486;406487;406488;406489;406490 249181;249182;249183;249184;249185;249186;249187;249188;249189;249190;249191;249192;249193;249194;249195;249196;249197;249198;249199;249200;249201;249202;249203;249204 249201 24 VLNTEAATLTSQFNQR Unmodified 1791.9115 0.91152593 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 34.793 33.41 2;3 2.5108E-103 16346 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 366.15 350.61 791360000 150520000 139330000 118600000 0 0 0 46902000 44410000 42051000 0 0 0 50610000 46007000 37487000 0 0 0 38995000 39380000 37065000 0 0 0 21872 1233 21197 406491;406492;406493;406494;406495;406496;406497;406498;406499;406500;406501;406502;406503;406504;406505;406506;406507;406508 249205;249206;249207;249208;249209;249210;249211;249212;249213;249214;249215;249216;249217;249218 249205 14 VLPAVAMLEER Unmodified 1226.6693 0.66929373 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 3 3 3 1 1 2 2 3 2 2 3 44.488 42.912 2;3 2.5842E-07 20535 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 161.79 161.79 13221000000 1105800000 972590000 970070000 4717500 5344700 5073400 1905600000 1611900000 1541300000 0 2788400 3414600 708300000 642290000 782890000 0 0 0 1130700000 916350000 911730000 0 0 0 21873 321 21198 406509;406510;406511;406512;406513;406514;406515;406516;406517;406518;406519;406520;406521;406522;406523;406524;406525;406526;406527;406528;406529;406530;406531;406532;406533;406534;406535;406536;406537;406538;406539;406540;406541;406542;406543 249219;249220;249221;249222;249223;249224;249225;249226;249227;249228;249229;249230;249231;249232;249233;249234;249235;249236;249237;249238;249239;249240;249241;249242;249243;249244;249245;249246;249247;249248;249249;249250;249251 249233 30 VLPAVAMLEER Oxidation (M) 1242.6642 0.66420836 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 2 1 1 1 35.788 34.261 2 0.026036 17139 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 58.699 57.096 158830000 15405000 5519300 7419500 0 0 0 32274000 18104000 29638000 0 0 0 8394700 15359000 8395900 0 0 0 12804000 0 5515400 0 0 0 21874 321 21198 406544;406545;406546;406547;406548;406549;406550;406551;406552;406553;406554;406555 249252;249253;249254;249255;249256 249253 147 2 VLPAVVSVR Unmodified 938.5913 0.59130141 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.402 27.125 2 0.00063648 11934 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 105.14 92.78 871690000 83327000 77281000 72665000 4827200 4664600 4888100 77206000 85142000 86411000 13304000 11273000 10004000 48825000 52447000 56117000 2167900 1311000 1743300 53733000 58530000 52455000 4890200 3806400 4666800 21875 1507 21199 406556;406557;406558;406559;406560;406561;406562;406563;406564;406565;406566;406567;406568;406569;406570;406571;406572;406573;406574;406575;406576;406577;406578;406579 249257;249258;249259;249260;249261;249262;249263;249264;249265;249266;249267;249268 249266 12 VLPDIAAAIDVIHAQVSGGGR Unmodified 2058.1222 0.12218741 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.116 52.677 3 3.3673E-10 25003 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 113.99 108.41 388710000 30455000 34870000 37285000 0 0 0 33744000 31388000 33811000 0 0 0 37470000 29892000 25828000 0 0 0 34981000 29954000 29034000 0 0 0 21876 1867 21200 406580;406581;406582;406583;406584;406585;406586;406587;406588;406589;406590;406591 249269;249270;249271;249272;249273;249274;249275;249276;249277;249278;249279 249277 9 VLPELNGK Unmodified 868.50182 0.5018177 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 3 1 1 1 2 3 3 1 1 1 2 2 1 1 1 1 3 3 3 1 1 1 20.163 20.452 2 0.00065547 7600 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.75 116.56 9970400000 549400000 593010000 463360000 7963000 8895900 7681300 1195800000 1090700000 1070000000 6006400 5346500 5307000 793150000 627420000 721970000 2575700 2020300 1852700 897170000 967280000 944560000 3534000 2781900 2635200 21877 504 21201 406592;406593;406594;406595;406596;406597;406598;406599;406600;406601;406602;406603;406604;406605;406606;406607;406608;406609;406610;406611;406612;406613;406614;406615;406616;406617;406618;406619;406620;406621;406622;406623;406624;406625;406626;406627;406628;406629;406630;406631;406632 249280;249281;249282;249283;249284;249285;249286;249287;249288;249289;249290;249291;249292;249293;249294;249295;249296;249297 249297 18 VLPEMPGEWICTMK Unmodified 1689.7929 0.79285604 867 P0AEK0 exoX Exodeoxyribonuclease 10 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 4 3 3 3 4 4 2 4 2 51.278 49.971 2;3 0.0020919 22632 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 65.395 61.632 1261000000 23219000 21086000 18225000 0 0 0 137040000 118390000 105470000 0 0 0 206560000 225590000 199710000 0 0 0 35879000 129500000 40279000 0 0 0 21878 867 21202 406633;406634;406635;406636;406637;406638;406639;406640;406641;406642;406643;406644;406645;406646;406647;406648;406649;406650;406651;406652;406653;406654;406655;406656;406657;406658;406659;406660;406661;406662;406663;406664;406665;406666;406667 249298;249299;249300;249301;249302;249303;249304;249305 249304 6 VLPENWWQHPAALGATDSDIEIIK Unmodified 2702.3704 0.37041618 790 P0ADI7 yecD Isochorismatase family protein YecD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.429 49.011 3 1.8894E-10 23104 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 128.12 125.84 1389700000 87754000 96255000 91394000 0 0 0 184940000 192960000 176790000 0 0 0 82570000 101620000 70911000 0 0 0 107700000 98200000 98579000 0 0 0 21879 790 21203 406668;406669;406670;406671;406672;406673;406674;406675;406676;406677;406678;406679 249306;249307;249308;249309;249310;249311;249312;249313;249314;249315;249316;249317 249315 12 VLPGMQAAFVDIGLDK Unmodified 1672.8858 0.88582845 526 P0A9J0 rng Ribonuclease G yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 52.852 51.497 2 0.00024757 25218 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.466 56.524 81988000 17261000 18135000 15699000 0 0 970030 3682700 5833300 3776200 1772300 1476300 0 3018800 0 3019100 0 0 0 4340900 3003200 0 0 0 0 21880 526 21204 406680;406681;406682;406683;406684;406685;406686;406687;406688;406689;406690;406691;406692 249318 249318 1 VLPGQVMVELIK Unmodified 1324.7788 0.77884418 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.172 48.774 2 2.6143E-06 23612 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 140.75 140.75 572350000 25899000 25233000 22969000 0 506850 0 41400000 42320000 40633000 0 0 0 58833000 53722000 53967000 0 0 0 62854000 64525000 70052000 3576700 3352200 2506200 21881 1307 21205 406693;406694;406695;406696;406697;406698;406699;406700;406701;406702;406703;406704;406705;406706;406707;406708 249319;249320;249321;249322;249323;249324;249325;249326;249327;249328;249329;249330 249327 12 VLPHLSDLTGR Unmodified 1206.6721 0.67207093 1848 P76291 cmoB tRNA (mo5U34)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS 1 1 28.356 27.185 3 0.00025289 12601 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.081 70.466 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21882 1848 21206 406709;406710 249331;249332 249331 2 VLPIIDWDNR Unmodified 1239.6612 0.66117189 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.211 45.746 2 1.224E-06 21328 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 167.24 142.32 1344400000 110300000 122380000 116060000 4284400 4635900 4344100 94618000 91622000 96060000 7610600 7335400 7969000 102490000 90852000 91238000 6509200 0 0 129800000 126440000 113340000 5590200 5505300 5453000 21883 1144 21207 406711;406712;406713;406714;406715;406716;406717;406718;406719;406720;406721;406722;406723;406724;406725;406726;406727;406728;406729;406730;406731;406732 249333;249334;249335;249336;249337;249338;249339;249340;249341;249342;249343;249344;249345;249346;249347;249348;249349;249350;249351;249352 249351 20 VLPITIHGDAAVTGQGVVQETLNMSK Unmodified 2677.4109 0.41090079 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 2 1 1 1 46.806 45.281 3 6.6623E-08 21536 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.36 98.16 1270700000 111290000 113160000 109930000 7579300 6043900 5496200 59147000 55589000 53877000 4093300 3315900 3845100 92990000 74853000 68164000 0 1354100 0 150070000 162090000 150860000 11030000 13776000 12188000 21884 937 21208 406733;406734;406735;406736;406737;406738;406739;406740;406741;406742;406743;406744;406745;406746;406747;406748;406749;406750;406751;406752;406753;406754;406755;406756;406757;406758;406759 249353;249354;249355;249356;249357;249358;249359;249360;249361;249362;249363;249364;249365;249366;249367;249368;249369 249363 16 VLPKNPDK Unmodified 909.52837 0.5283668 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 11.064 11.22 2 0.00030065 2254 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 154.35 145.11 134280000 0 0 0 0 0 0 0 0 0 49678000 38377000 46221000 0 0 0 0 0 0 0 0 0 0 0 0 21885 497 21209 406760;406761;406762 249370;249371;249372 249370 3 VLPKNPDKHLEAGCDLLK Unmodified 2046.0932 0.093195464 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 20.868 20.465 3;4 1.1759E-13 6561 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 120.24 102.09 871790000 0 0 0 0 0 0 0 0 0 310830000 293270000 264900000 0 0 0 0 0 0 0 0 0 2782300 0 0 21886 497 21210 406763;406764;406765;406766;406767;406768;406769 249373;249374;249375;249376;249377;249378 249376 6 VLPLERK Unmodified 853.53854 0.53853756 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 2 1 1 11.922 12.715 2 0.037667 3584 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 66.994 53.945 160170000 17562000 13945000 14217000 0 0 0 29646000 41454000 36602000 0 0 0 4009300 2736200 0 0 0 0 0 0 0 0 0 0 21887 670 21211 406770;406771;406772;406773;406774;406775;406776;406777;406778;406779 249379;249380 249379 2 VLPLNELKDKLEAMEGVQFK Unmodified 2300.245 0.24500466 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 50.164 48.715 4 0.041192 19512 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 38.159 34.432 38022000 0 0 0 1231100 0 1444900 0 0 0 7180300 5160600 5525700 0 0 0 0 0 0 0 0 0 5575700 5834400 6069800 21888 1197 21212 406780;406781;406782;406783;406784;406785;406786;406787 249381;249382 249381 1 VLPQGFGSGLVAMPDGVLQTR Unmodified 2141.1303 0.13030925 1080 P12994 ybhB UPF0098 protein YbhB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 51.99 50.784 2;3 1.5919E-15 24976 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 210.02 201.97 431060000 152170000 147690000 131190000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21889 1080 21213 406788;406789;406790;406791;406792;406793 249383;249384;249385;249386;249387;249388 249383 6 VLPREEELK Unmodified 1111.6237 0.62372375 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 1 1 1 1 1 1 1 1 1 1 1 13.367 14.267 3 0.1712 4444 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 14.938 6.5381 109530000 4012100 8828000 10991000 0 594080 753070 13618000 8174700 14195000 0 0 0 5395600 4576500 5168300 0 0 0 10670000 11745000 10812000 0 0 0 21890 1903 21214 406794;406795;406796;406797;406798;406799;406800;406801;406802;406803;406804;406805;406806;406807;406808 249389 249389 1 VLPSGVESNVAR Unmodified 1226.6619 0.66190017 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.274 20.464 2 6.9189E-06 8281 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 157.96 138.86 2511900000 168770000 159890000 138030000 4056300 4044700 3854400 201800000 189370000 198370000 4401600 4995800 3908000 187630000 156860000 168500000 2785300 0 1702400 298310000 307680000 296190000 4257500 3338200 3131200 21891 1218 21215 406809;406810;406811;406812;406813;406814;406815;406816;406817;406818;406819;406820;406821;406822;406823;406824;406825;406826;406827;406828;406829;406830;406831 249390;249391;249392;249393;249394;249395;249396;249397;249398;249399;249400;249401;249402;249403;249404;249405;249406;249407;249408;249409 249394 20 VLPSWRPDK Unmodified 1096.6029 0.60292873 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 1 2 20.648 21.036 2;3 0.00043375 7879 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 98.233 94.311 621270000 79959000 67532000 57091000 0 0 0 81777000 64704000 70207000 0 0 0 45943000 44210000 40252000 0 0 0 24626000 18429000 26537000 0 0 0 21892 427 21216 406832;406833;406834;406835;406836;406837;406838;406839;406840;406841;406842;406843;406844;406845;406846;406847;406848;406849;406850;406851 249410;249411;249412;249413;249414;249415;249416;249417;249418;249419;249420;249421;249422 249421 13 VLPVIIR Unmodified 808.55346 0.55345934 934 P0AFF2 nupC Nucleoside permease NupC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.837 31.207 2 0.00084899 14036 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 143.22 143.22 153500000 0 3256900 0 0 0 0 18126000 14433000 17101000 2004900 1766800 1340700 12071000 11453000 13926000 0 0 0 21467000 21423000 14005000 0 0 1122800 21893 934 21217 406852;406853;406854;406855;406856;406857;406858;406859;406860;406861;406862;406863;406864;406865;406866 249423;249424;249425;249426;249427;249428;249429;249430;249431;249432;249433 249432 11 VLQALLSR Unmodified 898.56 0.56000128 248 P0A6I3 coaA Pantothenate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.186 26.974 2 0.00030917 12411 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 146.54 81.766 226200000 17193000 17453000 19642000 0 0 0 19703000 19073000 17880000 0 0 0 15638000 13783000 15110000 0 0 0 22980000 25675000 22073000 0 0 0 21894 248 21218 406867;406868;406869;406870;406871;406872;406873;406874;406875;406876;406877;406878 249434;249435;249436;249437;249438;249439;249440 249435 7 VLQFTQQQLAQVGIK Unmodified 1699.9621 0.96210494 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.028 40.329 2 5.3852E-27 18888 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 233.45 200.22 278600000 32677000 24140000 19075000 0 0 0 24158000 27459000 25875000 0 0 0 19021000 21759000 15093000 0 0 0 26892000 21138000 21317000 0 0 0 21895 1774 21219 406879;406880;406881;406882;406883;406884;406885;406886;406887;406888;406889;406890 249441;249442;249443;249444;249445;249446;249447;249448;249449;249450;249451;249452 249451 12 VLQHIAGR Unmodified 892.52428 0.52428448 1514 P39187 ytfJ Uncharacterized protein YtfJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.499 12.332 2 0.001875 3351 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 105.2 76.335 319940000 68342000 46105000 46353000 0 0 0 20566000 22234000 21289000 0 0 0 12679000 12160000 12650000 0 0 0 22098000 18430000 17036000 0 0 0 21896 1514 21220 406891;406892;406893;406894;406895;406896;406897;406898;406899;406900;406901;406902 249453;249454;249455;249456 249454 4 VLQLINAYR Unmodified 1088.6342 0.63422886 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.414 32.731 2 2.0779E-06 16073 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 177.65 120.37 3029500000 192440000 213540000 206240000 4818100 7534000 5664000 130260000 126400000 126980000 7692200 7422900 6680600 216510000 195150000 187940000 0 0 0 462930000 441330000 414810000 24289000 24307000 26513000 21897 937 21221 406903;406904;406905;406906;406907;406908;406909;406910;406911;406912;406913;406914;406915;406916;406917;406918;406919;406920;406921;406922;406923 249457;249458;249459;249460;249461;249462;249463;249464;249465;249466;249467;249468;249469;249470;249471 249457 14 VLQLLGLPYR Unmodified 1170.7125 0.71247918 441 P0A8L1 serS Serine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 2 2 3 1 2 3 2 3 3 2 1 47.633 46.227 2;3 2.4487E-05 22959 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 170.32 170.32 4647400000 293460000 274920000 250730000 0 899740 0 549500000 514280000 390330000 1025800 0 0 418970000 380880000 362830000 0 0 0 404020000 426590000 377660000 0 0 1329200 21898 441 21222 406924;406925;406926;406927;406928;406929;406930;406931;406932;406933;406934;406935;406936;406937;406938;406939;406940;406941;406942;406943;406944;406945;406946;406947;406948;406949;406950;406951;406952;406953;406954;406955;406956 249472;249473;249474;249475;249476;249477;249478;249479;249480;249481;249482;249483;249484;249485;249486;249487;249488;249489;249490;249491;249492;249493;249494;249495;249496;249497 249472 24 VLQLQFIDPDVR Unmodified 1441.7929 0.79291434 421 P0A8E1 ycfP UPF0227 protein YcfP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 1 2 1 1 1 3 3 3 2 3 2 2 1 3 1 1 48.343 46.948 2;3 9.8296E-12 22645 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 188.04 184.78 2754200000 533170000 130050000 117520000 1952900 2370700 2756400 425200000 407490000 354500000 0 0 0 98297000 106400000 112570000 0 0 0 112900000 91157000 252540000 2741600 2589100 0 21899 421 21223 406957;406958;406959;406960;406961;406962;406963;406964;406965;406966;406967;406968;406969;406970;406971;406972;406973;406974;406975;406976;406977;406978;406979;406980;406981;406982;406983;406984;406985;406986;406987;406988;406989 249498;249499;249500;249501;249502;249503;249504;249505;249506;249507;249508;249509;249510;249511;249512;249513;249514;249515 249506 14 VLQMLEK Unmodified 859.48372 0.48372479 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 22.476 21.968 2 0.0035704 9226 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.43 62.819 1878800000 163960000 187610000 164420000 3159000 0 3144000 181510000 159440000 131960000 0 0 4209000 135560000 115650000 99524000 0 0 0 175830000 184290000 166990000 0 0 1521900 21900 295 21224 406990;406991;406992;406993;406994;406995;406996;406997;406998;406999;407000;407001;407002;407003;407004;407005;407006;407007;407008 249516;249517;249518;249519;249520;249521;249522;249523;249524;249525;249526 249521 11 VLQQVTDYYLTK Unmodified 1469.7766 0.77659558 1478 P37637 mdtF Multidrug resistance protein MdtF yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.082 33.34 2 1.9144E-06 13294 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 145.34 140.03 71573000 4078500 4965800 3434500 1076800 1064600 1288600 10675000 11539000 12055000 6099500 5435300 5239000 2336400 2285200 0 0 0 0 0 0 0 0 0 0 21901 1478 21225 407009;407010;407011;407012;407013;407014;407015;407016;407017;407018;407019;407020;407021;407022 249527;249528;249529;249530;249531 249527 4 VLQSQPGER Unmodified 1012.5302 0.53015772 818 P0ADX7 yhhA Uncharacterized protein YhhA yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 26.543 25.369 2 0.0063424 11413 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.854 61.319 146000000 0 0 0 0 0 0 29145000 23850000 28188000 0 0 0 21642000 20939000 22234000 0 0 0 0 0 0 0 0 0 21902 818 21226 407023;407024;407025;407026;407027;407028;407029;407030 249532;249533;249534 249533 3 VLRDDDNKPLVYEPGLHFK Unmodified 2254.1746 0.17461691 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 2 3 2 1 1 2 1 1 1 1 2 3 3 3 2 27.4 26.071 3;4;5 5.5517E-05 9815 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 80.975 76.869 716080000 10768000 18201000 3576400 13861000 27188000 17599000 34836000 31774000 37863000 60864000 76859000 59615000 14188000 15508000 17491000 5597300 9459800 8304800 27415000 31814000 47598000 55028000 62076000 28593000 21903 648 21227 407031;407032;407033;407034;407035;407036;407037;407038;407039;407040;407041;407042;407043;407044;407045;407046;407047;407048;407049;407050;407051;407052;407053;407054;407055;407056;407057;407058;407059;407060;407061;407062;407063;407064;407065;407066;407067;407068;407069;407070;407071;407072;407073;407074 249535;249536;249537;249538;249539;249540;249541;249542;249543;249544;249545;249546;249547;249548;249549;249550;249551;249552 249538 18 VLRDNVVIYEGELESLRR Unmodified 2159.1699 0.16986588 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 2 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 35.956 34.595 4 1.579E-05 13688 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 86.455 84.594 34294000 0 0 0 2909100 0 1348600 0 0 0 3702000 3107500 4344700 0 0 0 6264100 7039500 5578400 0 0 0 0 0 0 21904 297 21228 407075;407076;407077;407078;407079;407080;407081;407082 249553;249554;249555;249556;249557;249558 249557 6 VLREGGIYTPALR Unmodified 1443.8198 0.8197978 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 41.869 40.379 3 0.11179 15348 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 28.806 11.864 1992900000 0 0 0 0 576110 0 0 0 0 85372000 87582000 76460000 0 0 0 502870000 414290000 457260000 0 0 0 128220000 125190000 115020000 21905 1427 21229 407083;407084;407085;407086;407087;407088;407089;407090;407091;407092;407093;407094;407095;407096;407097;407098;407099;407100;407101 249559;249560;249561;249562;249563;249564;249565;249566 249566 8 VLRPAILWNDGR Unmodified 1408.7939 0.7939174 199 P09099 xylB Xylulose kinase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 32.607 31.25 3 0.016838 14792 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 47.712 46.34 66565000 8225300 6746100 8910200 0 0 0 7515500 7959700 5217500 0 0 0 5275500 3042400 3942600 0 0 0 0 4142700 5587600 0 0 0 21906 199 21230 407102;407103;407104;407105;407106;407107;407108;407109;407110;407111;407112 249567 249567 1 VLRQAVVVPESK Unmodified 1323.7874 0.78743503 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 1 By MS/MS By MS/MS 1 1 21.717 22 3 0.16979 8611 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 17.211 9.3006 5746500000 0 0 0 0 0 0 0 0 0 0 0 0 3019800000 0 2726600000 0 0 0 0 0 0 0 0 0 21907 839 21231 407113;407114 249568;249569 249568 2 VLSASSYSPDEWER Unmodified 1624.7369 0.73691561 1472 P37590 pmrD Signal transduction protein PmrD yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.279 31.676 2 1.6647E-27 15395 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 247.31 245.13 187720000 8479500 7395800 6132900 0 0 0 18212000 17659000 18980000 864000 528000 0 15458000 19984000 13436000 0 0 0 18505000 19981000 22101000 0 0 0 21908 1472 21232 407115;407116;407117;407118;407119;407120;407121;407122;407123;407124;407125;407126;407127;407128 249570;249571;249572;249573;249574;249575;249576;249577 249570 8 VLSCGNGGSHCDAMHFAEELTGR Unmodified 2504.0631 0.063110677 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 34.301 32.813 3;4 3.4671E-22 15664 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 172.61 171.83 1041900000 125770000 110700000 118930000 0 0 0 71003000 88094000 77937000 0 2076300 0 59337000 72012000 67890000 0 0 0 82492000 83711000 81910000 0 0 0 21909 1658 21233 407129;407130;407131;407132;407133;407134;407135;407136;407137;407138;407139;407140;407141;407142;407143;407144;407145;407146;407147;407148;407149;407150;407151;407152;407153 249578;249579;249580;249581;249582;249583;249584;249585;249586;249587;249588;249589;249590 249585 13 VLSDNEK Unmodified 803.4025 0.40249759 1884 P77202 dsbG Thiol:disulfide interchange protein DsbG yes yes 0 0 0 By MS/MS 1 9.5277 10.23 2 0.0092255 2423 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 88.029 10.106 36656000 0 0 0 0 0 0 36656000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21910 1884 21234 407154 249591 249591 1 VLSEITSSLNK Unmodified 1189.6554 0.65541781 535 P0A9L8 proC Pyrroline-5-carboxylate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.477 26.329 2 2.9601E-07 11801 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 189.38 180.85 1669300000 222030000 254400000 258730000 0 0 0 116320000 115140000 125700000 0 0 0 93424000 87740000 95984000 0 0 0 103420000 101790000 94637000 0 0 0 21911 535 21235 407155;407156;407157;407158;407159;407160;407161;407162;407163;407164;407165;407166 249592;249593;249594;249595;249596;249597;249598;249599 249596 8 VLSEPHHPSGELTDFR Unmodified 1819.8853 0.88531118 632 P0AB65 yccX Acylphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 3 2 2 1 2 3 3 2 3 3 2 2 2 19.99 20.449 2;3;4 1.0042E-13 7855 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 171.92 168.08 1143400000 189070000 155780000 161200000 1150400 1326100 513630 125630000 137670000 112830000 0 0 0 42253000 39254000 47594000 0 0 0 50320000 37725000 41060000 0 0 0 21912 632 21236 407167;407168;407169;407170;407171;407172;407173;407174;407175;407176;407177;407178;407179;407180;407181;407182;407183;407184;407185;407186;407187;407188;407189;407190;407191;407192;407193;407194;407195;407196;407197;407198;407199;407200;407201;407202 249600;249601;249602;249603;249604;249605;249606;249607;249608;249609;249610;249611;249612;249613;249614;249615;249616;249617 249614 18 VLSESDFQVNQLLDILR Unmodified 1988.0579 0.057855815 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 55.29 53.824 2;3 6.671E-50 26691 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 359.65 353.21 2475600000 321280000 340610000 344910000 0 0 2546000 205200000 167850000 203550000 0 0 0 127360000 133470000 122230000 0 0 0 185840000 166750000 153990000 0 0 0 21913 423 21237 407203;407204;407205;407206;407207;407208;407209;407210;407211;407212;407213;407214;407215;407216;407217;407218;407219;407220;407221;407222;407223;407224;407225;407226;407227 249618;249619;249620;249621;249622;249623;249624;249625;249626;249627;249628;249629;249630;249631;249632;249633;249634;249635;249636;249637;249638 249623 21 VLSGNLGR Unmodified 814.4661 0.4661009 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.359 14.995 2 0.15102 4564 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 48.787 15.049 543930000 0 0 0 318060 0 0 72592000 83141000 67301000 585250 324260 761990 52579000 44808000 42778000 0 0 0 56916000 59381000 62440000 0 0 0 21914 785 21238 407228;407229;407230;407231;407232;407233;407234;407235;407236;407237;407238;407239;407240 249639 249639 0 VLSGPGLVNLYR Unmodified 1286.7347 0.73467118 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.592 37.829 2 8.7442E-12 18705 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 189.7 180.94 1794100000 85792000 75668000 76255000 552200 835190 688940 227470000 192850000 189330000 813160 1599600 1758500 159730000 148030000 150130000 0 0 1706900 159030000 160900000 159020000 1003700 947750 0 21915 285 21239 407241;407242;407243;407244;407245;407246;407247;407248;407249;407250;407251;407252;407253;407254;407255;407256;407257;407258;407259;407260;407261 249640;249641;249642;249643;249644;249645;249646;249647;249648;249649 249642 9 VLSGPQAQPAGDK Unmodified 1266.6568 0.65681479 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.822 13.663 2 2.3083E-12 4123 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 189.72 180.76 8785000000 520780000 550260000 458160000 0 0 0 847230000 869990000 824030000 0 0 0 853550000 664610000 700540000 0 0 0 872600000 934890000 688410000 0 0 0 21916 24 21240 407262;407263;407264;407265;407266;407267;407268;407269;407270;407271;407272;407273 249650;249651;249652;249653;249654;249655;249656;249657;249658;249659;249660;249661 249656 12 VLSGPQAQPAGDKAEFIEK Unmodified 1984.0266 0.026555687 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 22.759 22.218 2;3 3.7307E-17 9698 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 201.16 193.99 11981000000 705520000 716560000 654410000 0 6635700 6544100 1073900000 1145700000 1015700000 5955800 0 0 1054700000 859250000 888290000 8507000 2921700 2196300 1200100000 1339200000 1278200000 7080200 5026900 4982900 21917 24 21241 407274;407275;407276;407277;407278;407279;407280;407281;407282;407283;407284;407285;407286;407287;407288;407289;407290;407291;407292;407293;407294;407295;407296;407297;407298;407299;407300;407301;407302;407303;407304;407305;407306 249662;249663;249664;249665;249666;249667;249668;249669;249670;249671;249672;249673;249674;249675;249676;249677;249678;249679;249680;249681;249682;249683;249684;249685;249686;249687;249688 249665 27 VLSHDVPLVHAIVEEMVK Unmodified 2014.0921 0.092132831 689 P0AC00 frlB Fructoselysine 6-phosphate deglycase yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 46.984 45.609 4 0.1554 21264 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 13.832 9.8242 16825000 0 0 0 0 0 0 2737000 0 0 0 0 0 3253300 4001200 6833600 0 0 0 0 0 0 0 0 0 21918 689 21242 407307;407308;407309;407310 249689 249689 1 VLSLAAVQLHGNEEQLYIDTLR Unmodified 2481.3227 0.32273771 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 47.914 46.5 3 8.2818E-35 22647 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 204.31 202.21 365540000 98732000 106670000 103910000 0 0 0 9244200 4189000 4687900 0 0 0 5781600 6145500 3364300 0 0 0 7501800 8149800 7156600 0 0 0 21919 49 21243 407311;407312;407313;407314;407315;407316;407317;407318;407319;407320;407321;407322 249690;249691;249692 249691 3 VLSLVVAMR Unmodified 986.59467 0.59467223 286 P0A6W0 glsA2 Glutaminase 2 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 38.837 37.299 2 7.8093E-05 18200 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 141.78 138.8 25262000 0 0 2405400 0 0 0 0 0 0 0 0 0 3810000 2270000 2615700 0 0 0 5411400 4131200 4618400 0 0 0 21920 286 21244 407323;407324;407325;407326;407327;407328;407329 249693;249694 249693 2 VLSMGDFSTELCGGTHASR Unmodified 2023.9092 0.90915944 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 36.887 35.107 2;3 1.0241E-36 17392 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 275.85 263.49 3012100000 235670000 226100000 188220000 2227700 3168100 2583900 270450000 280840000 283410000 6591100 8807600 6575500 253390000 204950000 178150000 0 0 0 320880000 279620000 251030000 2658200 3562200 3200600 21921 59 21245 407330;407331;407332;407333;407334;407335;407336;407337;407338;407339;407340;407341;407342;407343;407344;407345;407346;407347;407348;407349;407350;407351;407352;407353;407354;407355;407356;407357;407358;407359;407360;407361;407362 249695;249696;249697;249698;249699;249700;249701;249702;249703;249704;249705;249706;249707;249708;249709;249710;249711;249712;249713;249714;249715;249716;249717;249718;249719;249720;249721;249722;249723;249724;249725 249699 31 VLSSIADK Unmodified 831.47018 0.47018322 1375 P31663 panC Pantothenate synthetase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 14.345 15.119 2 0.0026172 4652 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 98.997 36.999 770850000 127030000 0 0 0 0 0 86503000 99364000 85670000 0 0 0 54864000 56715000 48689000 0 0 0 73360000 65381000 73274000 0 0 0 21922 1375 21246 407363;407364;407365;407366;407367;407368;407369;407370;407371;407372 249726;249727;249728;249729;249730;249731;249732;249733 249732 8 VLSSLSSLGSR Unmodified 1104.6139 0.61388734 1768 P75767 ybhK Putative gluconeogenesis factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.777 25.629 2 0.046554 11769 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 52.549 42.081 84653000 12626000 11067000 10112000 0 0 0 4956500 5580600 3508800 0 0 0 5799000 4822700 5754600 0 0 0 7294600 6657500 6473600 0 0 0 21923 1768 21247 407373;407374;407375;407376;407377;407378;407379;407380;407381;407382;407383;407384 249734 249734 0 VLSYLDVLR Unmodified 1076.623 0.62299547 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.202 43.767 2 1.1389E-07 21219 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.93 137.12 115060000 28699000 29580000 30967000 0 0 0 3205100 3067200 4036400 0 0 0 2383900 2118800 0 0 0 0 3096400 4836700 3071300 0 0 0 21924 1554 21248 407385;407386;407387;407388;407389;407390;407391;407392;407393;407394;407395 249735;249736;249737 249736 3 VLTADESK Unmodified 861.44436 0.4443624 620 P0AAZ7 ycaR UPF0434 protein YcaR yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.189 12.074 2 0.00040625 3040 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 123.69 85.556 823720000 0 0 128380000 0 0 0 138420000 0 0 0 0 0 94625000 82499000 76900000 0 0 0 94754000 104430000 103720000 0 0 0 21925 620 21249 407396;407397;407398;407399;407400;407401;407402;407403;407404;407405 249738;249739;249740 249738 3 VLTCGQWGER Unmodified 1204.5659 0.56589129 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.854 21.812 2 1.5871E-06 8859 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 163.32 144.05 1348700000 389220000 368630000 312400000 818830 0 0 20607000 18901000 13666000 0 548420 0 29812000 31543000 25534000 0 0 0 49806000 43369000 43815000 0 0 0 21926 1111 21250 407406;407407;407408;407409;407410;407411;407412;407413;407414;407415;407416;407417;407418;407419 249741;249742;249743;249744;249745;249746;249747 249743 7 VLTEAAVAGK Unmodified 957.5495 0.54949617 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 1 1 2 3 1 1 1 1 2 2 1 1 1 2 3 3 16.604 17.04 2 3.4458E-05 4589 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 143.01 113.44 42880000000 505820000 492410000 0 18846000 18611000 18459000 409190000 475560000 396180000 3494700000 3946500000 3864100000 354510000 370050000 324480000 5028000000 4206000000 4400200000 530420000 498800000 481510000 5135100000 4153600000 3756800000 21927 458 21251 407420;407421;407422;407423;407424;407425;407426;407427;407428;407429;407430;407431;407432;407433;407434;407435;407436;407437;407438;407439;407440;407441;407442;407443;407444;407445;407446;407447;407448;407449;407450;407451;407452;407453;407454 249748;249749;249750;249751;249752;249753;249754;249755;249756;249757;249758;249759;249760;249761;249762;249763;249764;249765;249766;249767;249768;249769;249770;249771;249772;249773;249774;249775;249776;249777;249778;249779;249780;249781;249782;249783;249784;249785;249786;249787;249788;249789 249766 41 VLTEAAVAGKR Unmodified 1113.6506 0.6506072 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 3 2 3 2 3 2 2 2 13.344 13.65 2;3 4.2398E-11 3364 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 239.82 198.6 31403000000 0 0 0 14195000 9021100 12782000 0 0 0 2268900000 2018900000 1843300000 0 0 0 6366200000 4454000000 4984000000 0 0 0 3213800000 3041600000 3176300000 21928 458 21252 407455;407456;407457;407458;407459;407460;407461;407462;407463;407464;407465;407466;407467;407468;407469;407470;407471;407472;407473;407474;407475;407476;407477;407478;407479;407480 249790;249791;249792;249793;249794;249795;249796;249797;249798;249799;249800;249801;249802;249803;249804;249805;249806;249807;249808;249809;249810;249811;249812;249813 249803 23 VLTETIFELMGITPTLHGGQAQAK Unmodified 2554.3465 0.34650962 1341 P30177 ybiB Uncharacterized protein YbiB yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.463 53.015 3 1.9809E-10 26273 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 127.8 125.42 1282300000 210000000 229370000 187220000 0 0 0 98174000 88942000 96009000 0 0 0 83361000 60040000 64385000 0 0 0 55483000 57333000 51967000 0 0 0 21929 1341 21253 407481;407482;407483;407484;407485;407486;407487;407488;407489;407490;407491;407492 249814;249815;249816;249817;249818;249819;249820 249815 7 VLTGGVDANALHR Unmodified 1321.7102 0.71024735 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 2 1 1 1 2 1 2 1 2 1 19.599 19.958 2;3 7.9669E-07 7910 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.14 90.349 168710000 24984000 36149000 25306000 572360 606480 389920 7758100 12837000 10403000 2316000 2422000 3145600 7389800 0 9521900 0 0 0 8393100 9277400 7237300 0 0 0 21930 982 21254 407493;407494;407495;407496;407497;407498;407499;407500;407501;407502;407503;407504;407505;407506;407507;407508;407509;407510;407511;407512;407513;407514;407515;407516 249821;249822;249823;249824;249825;249826;249827 249824 6 VLTGGVDANALHRPK Unmodified 1546.858 0.85797422 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 1 2 3 3 3 2 1 2 15.957 16.565 2;3;4 7.1021E-20 4781 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 238.92 236.79 2303400000 263630000 269750000 217610000 25937000 32691000 28487000 129870000 154420000 107930000 170080000 201820000 166240000 73752000 55122000 63349000 6000900 3893500 5145600 96568000 104990000 91976000 15000000 8777500 10392000 21931 982 21255 407517;407518;407519;407520;407521;407522;407523;407524;407525;407526;407527;407528;407529;407530;407531;407532;407533;407534;407535;407536;407537;407538;407539;407540;407541;407542;407543;407544;407545;407546;407547;407548;407549;407550;407551;407552;407553;407554;407555;407556;407557;407558;407559;407560;407561;407562;407563;407564;407565;407566;407567;407568;407569;407570;407571;407572;407573;407574;407575;407576;407577;407578;407579;407580 249828;249829;249830;249831;249832;249833;249834;249835;249836;249837;249838;249839;249840;249841;249842;249843;249844;249845;249846;249847;249848;249849;249850;249851 249831 23 VLTGLTK Unmodified 730.45889 0.45889025 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 15.876 16.7 1;2 0.0020271 5918 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 119.57 30.832 6818000000 410410000 421740000 375590000 0 0 1178600 619880000 562850000 532530000 0 0 0 638260000 689270000 584180000 0 0 0 640090000 639850000 702210000 0 0 0 21932 597 21256 407581;407582;407583;407584;407585;407586;407587;407588;407589;407590;407591;407592;407593;407594;407595;407596;407597;407598;407599;407600;407601;407602;407603;407604;407605 249852;249853;249854;249855;249856;249857;249858;249859;249860;249861;249862;249863 249852 11 VLTMFDLR Unmodified 993.53174 0.53173762 1889 P77247 yniC 2-deoxyglucose-6-phosphate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.352 41.97 2 3.7226E-05 19665 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 173.59 145.08 577560000 36483000 38375000 33934000 0 0 0 52105000 48057000 50441000 0 0 0 40826000 45175000 44856000 0 0 12372000 56806000 60333000 57798000 0 0 0 21933 1889 21257 407606;407607;407608;407609;407610;407611;407612;407613;407614;407615;407616;407617;407618 249864;249865;249866;249867;249868;249869;249870;249871;249872;249873;249874;249875 249873 12 VLTNSETNSIK Unmodified 1204.6299 0.62993134 1398 P32685 yjbD Uncharacterized protein YjbD yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.704 14.569 2 3.006E-07 4577 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 158.76 142.87 158370000 8072900 10744000 8702100 0 0 0 20890000 22118000 20995000 0 0 0 11274000 12698000 11755000 0 0 0 11263000 11354000 8504900 0 0 0 21934 1398 21258 407619;407620;407621;407622;407623;407624;407625;407626;407627;407628;407629;407630 249876;249877;249878;249879;249880;249881;249882 249879 7 VLTPDVVGIDALVHDHQTVLAK Unmodified 2339.2849 0.28489564 436 P0A8J2 dnaT Primosomal protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 43.991 42.461 4 5.4829E-11 20671 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.67 109.64 132600000 13351000 16738000 13817000 0 0 0 10965000 14490000 10318000 0 0 0 8295100 0 7949200 0 0 0 13133000 11926000 11620000 0 0 0 21935 436 21259 407631;407632;407633;407634;407635;407636;407637;407638;407639;407640;407641 249883;249884;249885;249886 249886 4 VLTPEFVAR Unmodified 1030.5811 0.58113065 1455 P37051 purU Formyltetrahydrofolate deformylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.474 29.118 2 1.2258E-05 13518 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 163.67 146.28 1955700000 352450000 337020000 303020000 0 0 0 84557000 86380000 77564000 0 0 0 97510000 84916000 94298000 0 0 0 142940000 145810000 149210000 0 0 0 21936 1455 21260 407642;407643;407644;407645;407646;407647;407648;407649;407650;407651;407652;407653 249887;249888;249889;249890;249891;249892;249893;249894;249895;249896;249897 249891 11 VLTQEMVK Oxidation (M) 962.51067 0.51066783 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 12.457 13.184 2 0.073484 3855 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 52.403 10.901 38508000 8572400 8325600 7995700 0 0 0 3886400 5130100 4597600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21937 1872 21261 407654;407655;407656;407657;407658;407659 249898 249898 0 VLTQEMVK Unmodified 946.51575 0.5157532 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.454 17.923 2 0.024481 6561 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.674 66.801 2323800000 284750000 315580000 333940000 1338800 0 0 178360000 170770000 163520000 1208800 1545000 1436500 112880000 122130000 108490000 0 0 0 179170000 169010000 176550000 967410 1191800 1005300 21938 1872 21261 407660;407661;407662;407663;407664;407665;407666;407667;407668;407669;407670;407671;407672;407673;407674;407675;407676;407677;407678 249899;249900;249901;249902;249903;249904 249902 0 VLTQTMVTSADEGGLHTK Unmodified 1886.9408 0.94077715 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 24.031 23.081 2;3 7.8151E-45 10366 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 249.75 241.65 1710700000 54795000 52371000 40593000 15312000 18135000 15721000 176250000 157990000 156890000 85975000 88428000 80919000 101000000 92073000 92153000 8822700 8052700 7046500 116700000 127110000 120730000 32156000 32227000 29250000 21939 27 21262 407679;407680;407681;407682;407683;407684;407685;407686;407687;407688;407689;407690;407691;407692;407693;407694;407695;407696;407697;407698;407699;407700;407701;407702;407703;407704;407705;407706;407707;407708;407709;407710;407711;407712;407713;407714;407715;407716;407717;407718;407719;407720;407721 249905;249906;249907;249908;249909;249910;249911;249912;249913;249914;249915;249916;249917;249918;249919;249920;249921;249922;249923;249924 249915 20 VLTSGQK Unmodified 731.41775 0.41775372 1715 P67826 cutC Copper homeostasis protein CutC yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 9.3656 10.14 2 0.010727 2001 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 86.512 43.466 57767000 0 8083200 6397500 0 0 0 0 0 0 0 0 0 6219100 7235900 4820900 0 0 0 7903100 8105400 8729100 0 0 273100 21940 1715 21263 407722;407723;407724;407725;407726;407727;407728;407729;407730 249925;249926;249927;249928;249929 249927 5 VLTVFGTRPEAIK Unmodified 1429.8293 0.82929985 1306 P27828 wecB UDP-N-acetylglucosamine 2-epimerase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 29.192 27.94 3 0.00030776 12361 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 76.326 52.072 299900000 33184000 25726000 32248000 0 0 0 27368000 25377000 25584000 0 0 0 22350000 37337000 31336000 0 0 0 0 0 39394000 0 0 0 21941 1306 21264 407731;407732;407733;407734;407735;407736;407737;407738;407739;407740 249930;249931;249932;249933;249934;249935;249936;249937 249936 8 VLTVNIK Unmodified 785.50109 0.50108942 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.31 24.352 2 0.0016551 8993 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 126.16 69.646 1248300000 121840000 126930000 111320000 883240 934720 0 133160000 164430000 125360000 0 0 0 68113000 62592000 60793000 6324700 9432800 0 74000000 92677000 89542000 0 0 0 21942 1154 21265 407741;407742;407743;407744;407745;407746;407747;407748;407749;407750;407751;407752;407753;407754;407755;407756 249938;249939;249940;249941;249942;249943;249944;249945;249946;249947;249948;249949;249950 249944 13 VLTWDSDTKPECR Unmodified 1605.7457 0.74570615 1821 P76142 lsrB Autoinducer 2-binding protein LsrB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 20.995 21.281 2;3 1.1549E-08 8369 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 167.12 166.98 628470000 213700000 202290000 189850000 0 0 0 6878400 5213500 0 0 0 0 0 0 0 0 0 0 6641300 0 3909500 0 0 0 21943 1821 21266 407757;407758;407759;407760;407761;407762;407763;407764;407765;407766 249951;249952;249953;249954;249955;249956 249953 6 VLVAESLYR Unmodified 1048.5917 0.59169534 435 P0A8I8 rlmH Ribosomal RNA large subunit methyltransferase H yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.931 28.574 2 0.033747 12697 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 62.107 58.423 222290000 19053000 15052000 13954000 0 0 0 14439000 13976000 16305000 0 0 0 14839000 16001000 14992000 0 0 0 30422000 29668000 23586000 0 0 0 21944 435 21267 407767;407768;407769;407770;407771;407772;407773;407774;407775;407776;407777;407778 249957 249957 0 VLVCVPVGATQVER Unmodified 1525.8286 0.82864792 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 1 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 34.822 33.296 2;3 4.6909E-11 12766 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 128.54 125.59 4092300000 225040000 247520000 181420000 43654000 41627000 37864000 238160000 234710000 230830000 252060000 226530000 217950000 171070000 161420000 158060000 49527000 30028000 28562000 328830000 318170000 330990000 109880000 119380000 109050000 21945 564 21268 407779;407780;407781;407782;407783;407784;407785;407786;407787;407788;407789;407790;407791;407792;407793;407794;407795;407796;407797;407798;407799;407800;407801;407802;407803;407804;407805;407806;407807;407808;407809;407810;407811;407812;407813;407814;407815;407816;407817;407818;407819;407820 249958;249959;249960;249961;249962;249963;249964;249965;249966;249967;249968;249969;249970;249971;249972;249973;249974;249975;249976;249977;249978;249979;249980;249981;249982;249983;249984;249985;249986;249987;249988;249989;249990;249991;249992;249993;249994;249995;249996 249975 36 VLVCVPVGATQVERR Unmodified 1681.9298 0.92975895 564 P0A9X4 mreB Rod shape-determining protein MreB yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 1 2 2 1 1 2 2 2 28.386 26.886 3 0.00025697 10115 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 66.533 65.708 63477000 0 0 0 5884900 5913700 5083600 0 0 0 6332600 10427000 8217300 0 0 0 2334500 0 1340800 0 0 0 5901400 6129200 5912500 21946 564 21269 407821;407822;407823;407824;407825;407826;407827;407828;407829;407830;407831;407832;407833;407834;407835;407836;407837;407838;407839 249997;249998;249999;250000 249999 4 VLVDGAQAVMHHPVDVQALDCDFYVFSGHK Unmodified 3353.5962 0.59615215 1906 P77444 sufS Cysteine desulfurase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 46.643 45.167 5 0.00057962 21898 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 60.79 58.835 256380000 0 44535000 30950000 0 0 0 26456000 38839000 35303000 0 0 0 13220000 14258000 15279000 0 0 0 0 18330000 14556000 0 4654900 0 21947 1906 21270 407840;407841;407842;407843;407844;407845;407846;407847;407848;407849;407850 250001;250002;250003 250001 3 VLVEGLQR Unmodified 912.53927 0.53926584 536 P0A9M0 lon Lon protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 27.755 26.668 2 2.6549E-06 6577 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 184.16 112.14 2507600000 168560000 151690000 129660000 45010000 54812000 46017000 182960000 168780000 145020000 48176000 40591000 38984000 162780000 131570000 119590000 70261000 59979000 70752000 173730000 174870000 169040000 54819000 54173000 45805000 21948 536 21271 407851;407852;407853;407854;407855;407856;407857;407858;407859;407860;407861;407862;407863;407864;407865;407866;407867;407868;407869;407870;407871;407872;407873;407874;407875;407876;407877;407878;407879;407880;407881;407882;407883;407884;407885;407886;407887;407888;407889;407890;407891;407892;407893;407894;407895 250004;250005;250006;250007;250008;250009;250010;250011;250012;250013;250014;250015;250016;250017;250018;250019;250020;250021;250022;250023;250024;250025;250026;250027 250005 24 VLVENPELIR Unmodified 1180.6816 0.68157298 1977 Q47690 mmuM Homocysteine S-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 31.48 30.341 2 0.0017236 14141 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.54 87.385 72376000 24451000 24319000 23606000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21949 1977 21272 407896;407897;407898 250028;250029;250030 250030 0 VLVICAK Unmodified 801.47825 0.47824549 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.258 20.487 2 0.016802 6404 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 80.377 70.193 7152600000 31890000 29622000 30566000 0 1348500 1653100 57430000 53398000 49078000 1414300000 1289300000 1271100000 52280000 47940000 39550000 0 1948500 0 77078000 64689000 73276000 892110000 832970000 841100000 21950 1616 21273 407899;407900;407901;407902;407903;407904;407905;407906;407907;407908;407909;407910;407911;407912;407913;407914;407915;407916;407917;407918;407919 250031;250032;250033;250034;250035;250036;250037;250038;250039;250040;250041;250042;250043;250044;250045 250042 14 VLVLTGAGISAESGIR Unmodified 1541.8777 0.8777066 1799 P75960 cobB NAD-dependent protein deacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 2 1 2 2 2 1 2 1 2 2 1 1 1 39.985 38.13 2;3 2.7699E-10 18528 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 149.23 129.1 180440000 19016000 14052000 9951200 0 0 0 4169500 3680700 4044100 4137500 6660300 6501800 16922000 11445000 13276000 0 0 0 17356000 22780000 21290000 1686700 1639700 1830700 21951 1799 21274 407920;407921;407922;407923;407924;407925;407926;407927;407928;407929;407930;407931;407932;407933;407934;407935;407936;407937;407938;407939;407940;407941;407942;407943;407944;407945;407946 250046;250047;250048;250049;250050;250051;250052;250053;250054;250055;250056;250057;250058;250059;250060;250061;250062;250063 250055 13 VLVLVAAPEGIAALEK Unmodified 1591.9549 0.95489429 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 51.468 50.158 2;3 3.9846E-07 23567 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.98 107.98 12963000000 1362100000 1317000000 1310700000 22984000 24196000 21191000 638570000 618220000 645310000 35750000 33280000 34981000 1024800000 1095800000 1105200000 0 0 0 1307300000 1201600000 1121200000 17739000 11776000 13348000 21952 424 21275 407947;407948;407949;407950;407951;407952;407953;407954;407955;407956;407957;407958;407959;407960;407961;407962;407963;407964;407965;407966;407967;407968;407969;407970;407971;407972;407973;407974;407975;407976;407977;407978;407979;407980;407981;407982;407983;407984;407985;407986;407987;407988 250064;250065;250066;250067;250068;250069;250070;250071;250072;250073;250074;250075;250076;250077;250078;250079;250080;250081;250082;250083;250084;250085;250086;250087;250088;250089;250090;250091;250092;250093;250094;250095;250096;250097;250098;250099;250100 250096 36 VLVLYYSMYGHIETMAR Unmodified 2045.0114 0.011439669 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 51.117 49.636 3 1.6021E-06 22557 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 74.12 67.713 153470000 18091000 25210000 17433000 1528400 0 0 10900000 9146000 13989000 5277000 0 4120200 5775200 5476100 0 0 691590 0 13440000 9222300 11701000 0 1473900 0 21953 428 21276 407989;407990;407991;407992;407993;407994;407995;407996;407997;407998;407999;408000;408001;408002;408003;408004;408005;408006;408007 250101;250102;250103 250102 1 VLVMYAGR Unmodified 907.49496 0.49495818 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.948 23.906 2 0.00026561 10413 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 149.06 141.39 209160000 30704000 27019000 27523000 8689200 9947900 9374000 9213700 9431200 11336000 4593600 4915600 4262900 0 5570000 7212400 1337800 847660 0 10048000 10685000 10671000 0 2410100 3367000 21954 1807 21277 408008;408009;408010;408011;408012;408013;408014;408015;408016;408017;408018;408019;408020;408021;408022;408023;408024;408025;408026;408027;408028 250104;250105;250106;250107;250108;250109;250110;250111;250112 250110 5 VLVMYLGHAVELGTYDEVYHNPLHPYTR Unmodified 3285.6281 0.62810421 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 45.842 44.108 4;5 3.6761E-08 17566 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 108.44 91.368 220020000 24361000 23800000 14739000 8966300 9017800 23543000 8781700 10600000 8729700 18026000 16792000 22310000 6649100 0 5923300 0 0 0 8406400 0 9376800 0 0 0 21955 1935 21278 408029;408030;408031;408032;408033;408034;408035;408036;408037;408038;408039;408040;408041;408042;408043;408044;408045;408046;408047;408048 250113;250114;250115;250116;250117;250118;250119 250115 7 VLVNDKGGNLMVLPLDQMLK Unmodified 2196.201 0.20103135 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 50.689 49.764 3 7.4784E-06 17904 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 67.995 65.071 18568000 0 0 0 4813600 5718900 5062400 0 0 0 0 0 0 0 0 0 0 2973400 0 0 0 0 0 0 0 21956 649 21279 408049;408050;408051;408052 250120;250121;250122 250122 3 VLVPTQEAIQK Unmodified 1224.7078 0.70778773 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 2 2 2 2 2 1 1 1 2 2 2 1 2 2 1 1 24.296 23.34 2;3 5.7135E-05 10411 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 145.16 124.21 37195000000 8745500000 8308400000 7949800000 27654000 27437000 29267000 2041600000 1998400000 1804600000 5929600 6531600 5346100 757730000 716420000 690180000 0 0 0 1357500000 1431400000 1284300000 0 3383700 3250900 21957 517 21280 408053;408054;408055;408056;408057;408058;408059;408060;408061;408062;408063;408064;408065;408066;408067;408068;408069;408070;408071;408072;408073;408074;408075;408076;408077;408078;408079;408080;408081;408082;408083;408084;408085;408086;408087 250123;250124;250125;250126;250127;250128;250129;250130;250131;250132;250133;250134;250135;250136;250137;250138;250139;250140;250141;250142;250143;250144;250145;250146;250147;250148;250149;250150;250151;250152;250153 250127 30 VLVSPFLR Unmodified 929.56984 0.56983769 1865 P76502 sixA Phosphohistidine phosphatase SixA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.632 36.832 2 0.00022905 18415 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.17 142.83 280610000 34145000 30056000 29689000 1159400 1128500 1170600 17304000 17136000 14785000 1716900 0 0 13382000 16981000 13907000 0 0 0 30397000 25059000 28115000 1418700 1768700 1289700 21958 1865 21281 408088;408089;408090;408091;408092;408093;408094;408095;408096;408097;408098;408099;408100;408101;408102;408103;408104;408105;408106 250154;250155;250156;250157;250158;250159;250160;250161;250162;250163;250164;250165 250154 12 VLVSSTK Unmodified 732.43815 0.43815481 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.443 12.25 2 0.0010429 3186 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 138.07 127.77 2650700000 105100000 109230000 99674000 0 2185800 0 318920000 296000000 292210000 0 1849800 0 245110000 209720000 214050000 0 0 0 256750000 257630000 242250000 0 0 0 21959 596 21282 408107;408108;408109;408110;408111;408112;408113;408114;408115;408116;408117;408118;408119;408120 250166;250167;250168;250169;250170;250171;250172;250173;250174;250175;250176;250177 250167 12 VLVTGATSGLGR Unmodified 1129.6455 0.64552182 1777 P75821 ybjS Uncharacterized protein YbjS yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.378 22.579 2 0.00041936 9598 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.29 73.084 97697000 9179500 10260000 6909700 2302600 2307700 2306200 4948500 3808600 4336300 3407200 3088900 2913800 3970100 2730800 2524000 0 0 589290 8542600 9684600 7669500 3620400 2596500 0 21960 1777 21283 408121;408122;408123;408124;408125;408126;408127;408128;408129;408130;408131;408132;408133;408134;408135;408136;408137;408138;408139;408140;408141 250178;250179;250180;250181 250180 2 VLVTTLTK Unmodified 873.55352 0.55351892 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.84 21.887 2 0.08992 9310 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 51.346 46.115 398200000 63735000 57838000 51280000 0 0 0 36264000 34285000 30567000 0 0 0 21884000 15383000 18113000 0 0 0 19528000 26178000 23144000 0 0 0 21961 426 21284 408142;408143;408144;408145;408146;408147;408148;408149;408150;408151;408152;408153 250182;250183;250184 250182 3 VLVVDDLLATGGTIEATVK Unmodified 1913.0721 0.072108896 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 3 2 3 2 2 3 54.252 52.822 2;3 1.5491E-17 24883 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 211.77 157.43 847480000 65282000 38168000 60830000 0 0 0 51869000 58718000 58619000 0 0 0 96161000 80841000 82633000 0 0 0 85275000 79593000 89495000 0 0 0 21962 1736 21285 408154;408155;408156;408157;408158;408159;408160;408161;408162;408163;408164;408165;408166;408167;408168;408169;408170;408171;408172;408173;408174;408175;408176;408177;408178;408179;408180;408181;408182 250185;250186;250187;250188;250189;250190;250191;250192;250193;250194;250195;250196;250197;250198;250199;250200;250201;250202;250203;250204 250202 20 VLVVDGEPVPYCLAR Unmodified 1685.8811 0.88107742 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.461 41.946 2 8.7128E-07 19608 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 152.07 149.45 230210000 23988000 23639000 21840000 0 0 0 18900000 20543000 18243000 0 0 0 11407000 12229000 10591000 0 0 0 23991000 21635000 23205000 0 0 0 21963 90 21286 408183;408184;408185;408186;408187;408188;408189;408190;408191;408192;408193;408194 250205;250206;250207;250208;250209;250210;250211;250212;250213;250214;250215;250216 250215 12 VLVVDGGGSVR Unmodified 1056.5928 0.59275797 454 P0A8R0 rraA Regulator of ribonuclease activity A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 20.73 20.86 2 0.00028469 8271 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 93.649 68.726 318370000 65699000 110610000 0 1854800 0 1659800 0 0 0 3035700 1783500 1855900 0 65929000 65137000 0 0 0 0 0 0 0 810850 0 21964 454 21287 408195;408196;408197;408198;408199;408200;408201;408202;408203;408204 250217;250218;250219;250220;250221 250218 5 VLVVDVSPETQLK Unmodified 1425.8079 0.80789571 250 P0A6I9 coaE Dephospho-CoA kinase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.852 35.195 2 0.00044985 16244 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 81.865 61.536 138340000 18635000 19331000 16854000 0 0 0 9809300 7960300 10040000 0 0 0 8578200 5991900 6752600 0 0 0 12663000 10519000 11208000 0 0 0 21965 250 21288 408205;408206;408207;408208;408209;408210;408211;408212;408213;408214;408215;408216 250222;250223;250224;250225 250225 1 VLVVEDNALLR Unmodified 1239.7187 0.71868677 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.675 36.059 2 1.5647E-11 17470 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 202.28 183.18 1813200000 187990000 180850000 156450000 7825500 6964300 6814500 143190000 162010000 130170000 6694800 6248600 8186500 114550000 94056000 102210000 19811000 19444000 27128000 151780000 131030000 137890000 3980300 4192600 3687800 21966 1214 21289 408217;408218;408219;408220;408221;408222;408223;408224;408225;408226;408227;408228;408229;408230;408231;408232;408233;408234;408235;408236;408237;408238;408239;408240 250226;250227;250228;250229;250230;250231;250232;250233;250234;250235;250236;250237;250238;250239;250240;250241;250242;250243;250244;250245;250246;250247;250248;250249 250244 24 VLVVGDMAELGAESEACHVQVGEAAK Unmodified 2668.2837 0.28365136 1074 P11880 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.752 39.039 3 1.3836E-30 18985 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 181.38 178.84 695540000 65705000 65317000 53821000 1934500 0 1429900 63756000 53381000 53292000 0 0 3375700 63183000 41956000 46389000 0 0 0 63677000 62112000 56207000 0 0 0 21967 1074 21290 408241;408242;408243;408244;408245;408246;408247;408248;408249;408250;408251;408252;408253;408254;408255 250250;250251;250252;250253;250254;250255;250256;250257;250258;250259;250260;250261 250254 12 VLVVGGSQGAR Unmodified 1041.5931 0.59309232 1139 P17443 murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.083 16.588 2 0.00027655 4854 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.692 61.851 85307000 0 0 0 2605900 2111700 0 6197000 6244600 5815300 9034000 9029300 6900100 0 0 0 0 0 0 8455400 7876100 6329100 6544100 3815400 4348700 21968 1139 21291 408256;408257;408258;408259;408260;408261;408262;408263;408264;408265;408266;408267;408268;408269 250262;250263 250262 2 VLVVGTDGIPEAR Unmodified 1324.7351 0.73506511 1516 P39265 alsB D-allose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.174 32.726 2 8.7595E-06 15554 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 121.83 117.81 164360000 30160000 29423000 26298000 0 0 0 10635000 11082000 7539400 0 0 0 8460500 5158300 6223800 0 0 0 9116900 11325000 8937100 0 0 0 21969 1516 21292 408270;408271;408272;408273;408274;408275;408276;408277;408278;408279;408280;408281 250264;250265 250265 2 VLVVSADVYRPAAIK Unmodified 1599.9348 0.93482755 1009 P0AGD7 ffh Signal recognition particle protein yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 2 2 2 2 2 2 2 1 1 2 1 1 2 2 2 2 2 2 32.009 30.531 2;3 3.8139E-08 12080 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 136.48 129.94 817680000 10890000 0 53685000 1687200 1757600 11450000 48257000 51918000 44547000 55595000 57690000 48350000 35472000 4577600 4370100 17378000 11487000 10161000 85598000 91496000 81074000 28612000 29932000 31695000 21970 1009 21293 408282;408283;408284;408285;408286;408287;408288;408289;408290;408291;408292;408293;408294;408295;408296;408297;408298;408299;408300;408301;408302;408303;408304;408305;408306;408307;408308;408309;408310;408311;408312;408313;408314;408315;408316;408317;408318;408319;408320 250266;250267;250268;250269;250270;250271;250272;250273;250274;250275;250276;250277;250278;250279;250280;250281;250282;250283;250284;250285;250286;250287;250288;250289;250290;250291;250292 250269 25 VLVVWAGQQ Unmodified 998.55492 0.5549159 1268 P25718 malS Alpha-amylase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 45.089 43.545 2 0.019969 21113 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 62.978 61.484 21097000 0 0 0 0 0 0 2849800 2167600 2122200 0 0 0 2922400 3049000 2583200 0 0 0 0 0 5402600 0 0 0 21971 1268 21294 408321;408322;408323;408324;408325;408326;408327 250293 250293 1 VLVYFYPK Unmodified 1027.5743 0.57425436 834 P0AE52 bcp Putative peroxiredoxin bcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.448 36.033 2 0.0057635 17445 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 86.086 66.572 3635400000 426250000 427040000 351380000 3080300 2442100 2847400 265550000 271230000 258680000 0 0 0 220670000 192080000 188180000 5001300 2862800 3272400 346830000 338340000 327210000 0 0 2414800 21972 834 21295 408328;408329;408330;408331;408332;408333;408334;408335;408336;408337;408338;408339;408340;408341;408342;408343;408344;408345;408346 250294;250295;250296;250297;250298;250299;250300;250301;250302;250303;250304;250305;250306;250307;250308;250309 250298 16 VLWYGEK Unmodified 893.4647 0.46470391 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.386 26.239 2 0.028578 11717 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 68.485 56.923 536180000 39504000 33516000 33165000 0 0 0 52067000 47726000 49617000 0 0 0 35782000 34181000 36443000 0 0 0 58051000 59473000 56659000 0 0 0 21973 97 21296 408347;408348;408349;408350;408351;408352;408353;408354;408355;408356;408357;408358 250310;250311;250312 250312 3 VLYAMNVLGNDWNK Unmodified 1635.8079 0.80791248 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 1 2 1 2 2 2 1 1 2 2 2 2 1 1 47.392 46.12 2;3 5.1481E-11 21444 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 169.58 143.07 1163900000 91499000 91495000 84336000 0 2332400 0 74317000 70469000 65685000 19104000 19228000 18190000 107260000 87842000 91460000 10505000 5339800 10705000 101200000 108260000 100510000 0 2135400 2047000 21974 882 21297 408359;408360;408361;408362;408363;408364;408365;408366;408367;408368;408369;408370;408371;408372;408373;408374;408375;408376;408377;408378;408379;408380;408381;408382;408383;408384;408385;408386;408387;408388;408389;408390;408391 250313;250314;250315;250316;250317;250318;250319;250320;250321;250322;250323;250324;250325;250326;250327;250328;250329;250330;250331;250332;250333 250332 21 VLYDAEISQIHQSVTDTNVILSMDNSR Unmodified 3047.487 0.48697886 17 CON__P35908 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 49.262 47.923 3 3.4818E-16 18966 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 149.73 148.66 128960000 0 0 0 6500100 8425200 7202500 0 0 0 9648000 8736000 8993200 0 0 0 0 5764100 0 0 0 0 29305000 23193000 21194000 + 21975 17 21298 408392;408393;408394;408395;408396;408397;408398;408399;408400;408401 250334;250335;250336;250337;250338 250338 5 VLYEMDGVPEELAR Unmodified 1619.7865 0.78650834 821 P0ADY7 rplP 50S ribosomal protein L16 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 41.883 40.011 2;3 2.1288E-14 19534 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 187.42 180.76 5990300000 781220000 746080000 665210000 26699000 26615000 26541000 199640000 193190000 175500000 58341000 51159000 49463000 389930000 363910000 357200000 0 0 0 556610000 554930000 560690000 70157000 67556000 69617000 21976 821 21299 408402;408403;408404;408405;408406;408407;408408;408409;408410;408411;408412;408413;408414;408415;408416;408417;408418;408419;408420;408421;408422;408423;408424;408425;408426;408427;408428;408429;408430;408431;408432;408433;408434;408435;408436;408437;408438;408439;408440;408441;408442 250339;250340;250341;250342;250343;250344;250345;250346;250347;250348;250349;250350;250351;250352;250353;250354;250355;250356;250357;250358;250359;250360;250361;250362 250348 24 VLYEMDGVPEELAR Oxidation (M) 1635.7814 0.78142296 821 P0ADY7 rplP 50S ribosomal protein L16 yes yes 0 1 0 By matching By MS/MS By matching By matching 1 1 1 1 35.589 33.811 2 0.033384 16132 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 43.549 36.661 18191000 7570200 5418700 0 0 0 0 0 0 0 0 0 2999700 0 0 0 0 0 0 0 0 0 2202300 0 0 21977 821 21299 408443;408444;408445;408446 250363 250363 389 0 VLYFENDHEK Unmodified 1292.6037 0.60371659 1116 P15977 malQ 4-alpha-glucanotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 18.69 18.87 3 0.11247 5871 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 24.291 21.505 45916000 0 0 0 0 0 0 7085900 7100400 0 2967100 2378700 1505000 0 0 0 0 0 0 4909500 9134800 7448300 2285900 1100100 0 21978 1116 21300 408447;408448;408449;408450;408451;408452;408453;408454;408455;408456 250364 250364 1 VLYFESYVVIEGGMTNLER Unmodified 2218.098 0.09800607 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 4 4 2 1 2 2 2 2 1 1 4 2 3 54.837 53.662 2;3 3.7946E-45 21583 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 316.42 313.92 1635100000 0 11302000 3536300 661990 0 0 0 0 0 128450000 114970000 88536000 0 0 2118500 300430000 295120000 302210000 26663000 5258300 9206200 110890000 111920000 123810000 21979 458 21301 408457;408458;408459;408460;408461;408462;408463;408464;408465;408466;408467;408468;408469;408470;408471;408472;408473;408474;408475;408476;408477;408478;408479;408480;408481;408482;408483;408484;408485;408486;408487;408488;408489 250365;250366;250367;250368;250369;250370;250371;250372;250373;250374;250375;250376;250377;250378;250379;250380;250381;250382;250383;250384;250385;250386;250387;250388;250389;250390;250391;250392;250393 250378 29 VLYFESYVVIEGGMTNLER Oxidation (M) 2234.0929 0.092920692 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 1 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 51.85 50.747 3 0.010833 20324 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 43.12 39.168 35734000 0 0 0 0 0 0 0 0 0 5025000 6846600 3560600 0 0 0 0 3166700 4237100 0 2105900 0 4268700 2603200 3920700 21980 458 21301 408490;408491;408492;408493;408494;408495;408496;408497;408498 250394;250395 250394 249 2 VLYPDDSTYSGR Unmodified 1371.6307 0.63065962 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 23.661 22.853 2 1.3644E-06 10109 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 148.94 147.14 236680000 0 0 26730000 0 0 0 35727000 33176000 27760000 0 0 1102600 19545000 22703000 18655000 0 0 0 15745000 16250000 19289000 0 0 0 21981 709 21302 408499;408500;408501;408502;408503;408504;408505;408506;408507;408508;408509 250396;250397;250398;250399;250400 250397 5 VLYPINSK Unmodified 932.53312 0.53311783 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.283 21.359 2 0.0010066 8815 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.89 94.326 722210000 76125000 64632000 51443000 2825700 2608400 2422200 49887000 49356000 51107000 13384000 11933000 12582000 41706000 37263000 35694000 2920600 1732700 1342300 55988000 62048000 57170000 12907000 13395000 11737000 21982 1408 21303 408510;408511;408512;408513;408514;408515;408516;408517;408518;408519;408520;408521;408522;408523;408524;408525;408526;408527;408528;408529;408530;408531;408532;408533 250401;250402;250403;250404;250405;250406;250407;250408;250409;250410;250411;250412 250405 12 VLYPNDNHTAGK Unmodified 1327.6521 0.65206377 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 12.285 12.832 2;3 2.3589E-06 3549 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 142.43 133.07 1512900000 47880000 46733000 43090000 0 0 0 153470000 153280000 163010000 36727000 30231000 32629000 112190000 87387000 104140000 16952000 14500000 13545000 151680000 134880000 140250000 10431000 10310000 9551400 21983 30 21304 408534;408535;408536;408537;408538;408539;408540;408541;408542;408543;408544;408545;408546;408547;408548;408549;408550;408551;408552;408553;408554;408555;408556;408557;408558;408559;408560;408561;408562;408563;408564;408565;408566;408567;408568;408569;408570;408571;408572;408573;408574;408575 250413;250414;250415;250416;250417;250418;250419;250420;250421;250422;250423;250424;250425;250426;250427;250428;250429;250430;250431;250432;250433;250434;250435;250436 250424 24 VLYPNDNHTAGKK Unmodified 1455.747 0.74702678 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 2 1 1 1 2 2 1 11.348 11.573 2;3 5.7618E-06 2450 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 115.57 112.92 150510000 0 0 0 0 0 0 4752000 3771100 0 36950000 30640000 28227000 0 0 0 7005000 6623400 6565900 0 0 0 10040000 9602700 6335900 21984 30 21305 408576;408577;408578;408579;408580;408581;408582;408583;408584;408585;408586;408587;408588;408589;408590;408591 250437;250438;250439;250440;250441;250442;250443 250441 6 VLYQSFPQAER Unmodified 1336.6776 0.67755023 70 P02919 mrcB Penicillin-binding protein 1B;Penicillin-insensitive transglycosylase;Penicillin-sensitive transpeptidase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 27.535 26.322 2 0.073668 11966 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 44.309 41.009 14240000 0 0 0 0 0 0 3240300 0 0 0 0 0 2065200 0 0 0 0 0 2984600 3322000 2627500 0 0 0 21985 70 21306 408592;408593;408594;408595;408596 250444 250444 0 VMAENGR Unmodified 775.36467 0.36467229 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 1 1 1 9.2784 9.8911 2 0.0045644 1983 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 103.29 21.023 95238000 0 0 0 0 0 0 0 0 0 17692000 13591000 16095000 6170600 8110200 4299000 0 0 0 9745700 9333100 10201000 0 0 0 21986 643 21307 408597;408598;408599;408600;408601;408602;408603;408604;408605;408606;408607;408608;408609 250445;250446;250447;250448;250449;250450 250449 6 VMAGEEPLEMGPTEFK Unmodified 1763.811 0.81100853 946 P0AFJ5 phoB Phosphate regulon transcriptional regulatory protein PhoB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.644 38.207 2 9.2167E-24 17859 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 208.74 205.4 1464800000 12206000 9576800 10114000 0 0 0 104630000 98412000 102040000 0 0 0 164080000 151360000 158600000 6893600 3509100 4325800 209550000 209050000 208040000 4911800 4299600 3240900 21987 946 21308 408610;408611;408612;408613;408614;408615;408616;408617;408618;408619;408620;408621;408622;408623;408624;408625;408626;408627 250451;250452;250453;250454;250455;250456;250457;250458;250459;250460;250461;250462 250460 12 VMAGLGIAVVSTSK Unmodified 1331.7483 0.74827234 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 37.657 35.95 2 1.0147E-05 12583 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 107.18 97.521 270640000 24624000 0 18825000 12310000 12663000 11521000 22017000 0 0 39766000 26735000 29823000 0 0 0 13036000 9480800 9046500 0 0 0 13499000 13824000 13468000 21988 377 21309 408628;408629;408630;408631;408632;408633;408634;408635;408636;408637;408638;408639;408640;408641;408642;408643;408644 250463;250464;250465;250466;250467;250468;250469;250470;250471;250472;250473;250474;250475;250476;250477;250478;250479;250480 250477 15 VMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAK Unmodified 3874.8957 0.89570499 207 P09158 speE Polyamine aminopropyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 48.786 47.509 6 0.021284 23093 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 40.837 40.756 341820000 77094000 59164000 88790000 0 0 0 0 7767200 0 0 0 0 15251000 11615000 12086000 0 0 0 19781000 26541000 23734000 0 0 0 21989 207 21310 408645;408646;408647;408648;408649;408650;408651;408652;408653;408654 250481;250482;250483 250482 3 VMALINEAAAR Unmodified 1157.6227 0.62267789 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.192 27.839 2 0.00019357 10839 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.692 85.478 210410000 22589000 23136000 18409000 858940 998990 0 17111000 18698000 19196000 0 2907300 3446300 9663400 7575500 13231000 0 0 1076500 14326000 19874000 14238000 1687500 0 1389300 21990 127 21311 408655;408656;408657;408658;408659;408660;408661;408662;408663;408664;408665;408666;408667;408668;408669;408670;408671;408672;408673;408674 250484;250485 250484 1 VMANSAASSLK Unmodified 1077.5488 0.54884425 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 13.852 14.651 2 1.9816E-05 4588 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.57 106.38 308910000 104020000 85163000 119730000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21991 1141 21312 408675;408676;408677 250486;250487;250488 250487 3 VMANSAASSLK Oxidation (M) 1093.5438 0.54375887 1141 P17445 betB NAD/NADP-dependent betaine aldehyde dehydrogenase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 1 1 1 12.282 12.98 2 0.00036399 3654 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.149 71.65 6452700 0 6452700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21992 1141 21312 408678;408679;408680 250489;250490;250491 250491 497 3 VMAQAWTADDFGSNESK Unmodified 1855.8047 0.8046776 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 34.622 32.743 2 3.3561E-06 12633 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 92.856 92.856 17194000 0 0 0 0 0 0 0 0 4784400 0 2713900 2669000 0 0 0 0 0 0 0 0 4383200 0 2643600 0 21993 1877 21313 408681;408682;408683;408684;408685 250492;250493 250493 2 VMASQQALQDR Unmodified 1245.6136 0.61356977 1251 P24555 ptrB Protease 2 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.807 15.581 2 0.019335 4931 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 71.451 66.485 84674000 9958800 9231400 10778000 0 0 0 12277000 5759400 8371600 0 0 0 3461100 3395300 3729100 0 0 0 5852400 5422600 6436600 0 0 0 21994 1251 21314 408686;408687;408688;408689;408690;408691;408692;408693;408694;408695;408696;408697 250494;250495 250495 2 VMCHDAVEVLHK Unmodified 1436.6904 0.69043988 434 P0A8I5 trmB tRNA (guanine-N(7)-)-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 1 14.89 15.546 2;3 1.5512E-05 5184 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.122 91.228 533820000 31620000 33898000 27840000 0 0 0 30333000 37994000 40514000 3406700 2972500 0 45354000 38537000 35285000 0 0 0 72015000 64781000 58525000 4689500 4047300 2005000 21995 434 21315 408698;408699;408700;408701;408702;408703;408704;408705;408706;408707;408708;408709;408710;408711;408712;408713;408714;408715;408716;408717;408718;408719;408720;408721;408722;408723;408724;408725;408726 250496;250497;250498;250499;250500 250500 3 VMDLAAFTLAR Unmodified 1206.6431 0.64307898 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 34.972 34.476 2 3.0071E-14 23392 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 211.02 205.65 1447500000 150810000 144780000 146160000 0 0 1674600 109850000 101970000 101910000 1669000 0 0 82782000 80843000 73955000 0 0 0 146990000 157140000 145560000 0 0 1397600 21996 338 21316 408727;408728;408729;408730;408731;408732;408733;408734;408735;408736;408737;408738;408739;408740;408741;408742;408743;408744;408745;408746;408747;408748;408749;408750;408751;408752;408753 250501;250502;250503;250504;250505;250506;250507;250508;250509;250510;250511;250512;250513 250501 13 VMDSNDLEK Oxidation (M) 1065.4648 0.46483985 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 1 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 11.574 12.37 2 0.0041305 3245 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 82.279 74.339 1120500000 125620000 89711000 0 0 0 0 139730000 150950000 0 0 0 0 162340000 0 0 0 0 0 158280000 142350000 151560000 0 0 0 21997 1388 21317 408754;408755;408756;408757;408758;408759;408760;408761 250514;250515;250516;250517;250518 250518 542 5 VMDSNDLEK Unmodified 1049.4699 0.46992522 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.149 14.962 2 0.00014849 4818 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 131.06 119.99 1983200000 135440000 121750000 118490000 0 635070 620380 159150000 157240000 162410000 0 0 0 209580000 189670000 185750000 0 0 0 186720000 185040000 169770000 0 900460 0 21998 1388 21317 408762;408763;408764;408765;408766;408767;408768;408769;408770;408771;408772;408773;408774;408775;408776 250519;250520;250521;250522;250523;250524;250525;250526;250527;250528;250529;250530 250521 12 VMDSNDLEKER Unmodified 1334.6136 0.61362935 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 1 2 2 2 2 2 2 1 1 2 2 1 1 1 1 1 2 2 2 1 13.42 14.059 2;3 3.1382E-20 4302 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 245.99 234.4 589620000 16373000 78644000 16698000 4812000 4525800 5237300 78605000 65743000 65115000 5471100 4769800 3945700 16540000 61981000 45892000 2791900 2691700 5973500 21655000 20308000 51846000 3594200 4976300 1426100 21999 1388 21318 408777;408778;408779;408780;408781;408782;408783;408784;408785;408786;408787;408788;408789;408790;408791;408792;408793;408794;408795;408796;408797;408798;408799;408800;408801;408802;408803;408804;408805;408806;408807;408808;408809;408810;408811;408812;408813 250531;250532;250533;250534;250535;250536;250537;250538;250539;250540;250541;250542;250543 250533 12 VMDTLHQAGYLK Unmodified 1374.6966 0.69657112 684 P0ABV2 exbD Biopolymer transport protein ExbD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.073 21.868 3 0.0067695 9105 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 59.198 49.911 145690000 9141100 7099600 9770300 1613300 1641700 2628000 7128300 6631200 4755400 3434500 3001800 3169100 7680900 8136800 6706900 0 672670 0 15868000 15231000 21686000 4903800 2763500 2026900 22000 684 21319 408814;408815;408816;408817;408818;408819;408820;408821;408822;408823;408824;408825;408826;408827;408828;408829;408830;408831;408832;408833;408834;408835 250544 250544 1 VMEAIETLPER Unmodified 1286.654 0.6540376 873 P0AEM6 fliA RNA polymerase sigma factor FliA yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 30.769 29.63 2 0.00015967 13833 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.66 101.13 181900000 60846000 61735000 59321000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22001 873 21320 408836;408837;408838 250545;250546 250546 2 VMEEILALR Unmodified 1072.5951 0.59506616 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 40.46 38.784 2 4.1259E-05 19188 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 151.27 133.28 1272900000 146830000 124900000 129160000 512360 858520 915550 105940000 99657000 107920000 0 0 0 76753000 69084000 73185000 0 0 0 111170000 116280000 109710000 0 0 0 22002 1298 21321 408839;408840;408841;408842;408843;408844;408845;408846;408847;408848;408849;408850;408851;408852;408853 250547;250548;250549;250550;250551;250552;250553;250554;250555;250556;250557;250558 250549 6 VMEELYPR Unmodified 1035.5059 0.5059168 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 26.142 25.004 2 0.00037677 11030 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.64 114.12 1004300000 41972000 44060000 40856000 20144000 21039000 17774000 36666000 42231000 36911000 22615000 21150000 25415000 38575000 33794000 34337000 11036000 7219200 7645500 103770000 114320000 111520000 57018000 53499000 60731000 22003 215 21322 408854;408855;408856;408857;408858;408859;408860;408861;408862;408863;408864;408865;408866;408867;408868;408869;408870;408871;408872;408873;408874;408875;408876;408877;408878;408879;408880 250559;250560;250561;250562;250563;250564;250565;250566;250567;250568;250569;250570;250571;250572;250573 250570 15 VMENLLLESADK Unmodified 1360.6908 0.69081704 1242 P24203 yjiA Uncharacterized GTP-binding protein YjiA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.653 36.113 2 3.2673E-06 17933 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 136.48 124.76 810390000 71443000 85716000 62537000 1312400 1140900 0 62651000 58898000 56771000 4440100 0 0 56088000 52731000 57296000 0 6562000 5612000 82052000 66991000 78154000 0 0 0 22004 1242 21323 408881;408882;408883;408884;408885;408886;408887;408888;408889;408890;408891;408892;408893;408894;408895;408896;408897 250574 250574 1 VMFNPGDTITSHDGWQMQVEEVK Unmodified 2647.2047 0.20467276 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.386 41.952 3 3.4449E-07 14809 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 108.5 106.36 199180000 0 0 0 0 0 0 0 0 0 24923000 24416000 25220000 5091700 4610800 3945700 22309000 16855000 16404000 4714900 6970100 0 14623000 15323000 13772000 22005 1616 21324 408898;408899;408900;408901;408902;408903;408904;408905;408906;408907;408908;408909;408910;408911 250575;250576;250577 250576 3 VMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTR Unmodified 3993.8877 0.8877023 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 3 4 3 1 1 5 3 3 1 3 3 4 51.696 50.681 3;4;5 3.8893E-69 19982 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 249.68 249.32 13565000000 8356700 11416000 0 1065300 0 745900 17760000 8079700 13847000 1507600000 1523000000 1570000000 0 14683000 14494000 2440900000 1857200000 1574900000 0 0 13480000 953700000 898410000 1135400000 22006 1616 21325 408912;408913;408914;408915;408916;408917;408918;408919;408920;408921;408922;408923;408924;408925;408926;408927;408928;408929;408930;408931;408932;408933;408934;408935;408936;408937;408938;408939;408940;408941;408942;408943;408944;408945;408946;408947;408948;408949;408950;408951;408952 250578;250579;250580;250581;250582;250583;250584;250585;250586;250587;250588;250589;250590;250591;250592;250593;250594;250595;250596;250597;250598;250599;250600;250601;250602;250603;250604 250603 26 VMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTR Oxidation (M) 4009.8826 0.88261693 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 51.047 49.572 3;4 4.2871E-34 19564 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 189.79 189.4 547180000 0 0 0 0 0 0 0 0 0 149570000 116130000 113350000 0 0 0 0 0 0 0 0 0 58107000 63997000 46031000 22007 1616 21325 408953;408954;408955;408956;408957;408958;408959;408960;408961;408962 250605;250606;250607;250608;250609 250608 574 5 VMGDGER Oxidation (M) 778.32795 0.32795243 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 1 0 By matching By matching By MS/MS 1 1 1 4.6439 5.5318 2 0.13119 963 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 53.351 44.668 21822000 0 0 0 0 0 0 7202800 7454900 7164700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22008 64 21326 408963;408964;408965 250610 250610 1 VMGDYTDIEIIEAHHR Unmodified 1897.8992 0.89924668 85 P04036 dapB 4-hydroxy-tetrahydrodipicolinate reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 31.5 30.144 2;3;4 7.2781E-14 14229 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 174.24 170.82 1533400000 156640000 170630000 140260000 0 0 0 127760000 123970000 131230000 0 0 0 104170000 86966000 99412000 0 0 0 136970000 122210000 133200000 0 0 0 22009 85 21327 408966;408967;408968;408969;408970;408971;408972;408973;408974;408975;408976;408977;408978;408979;408980;408981;408982;408983;408984;408985;408986;408987;408988;408989;408990;408991;408992;408993;408994;408995;408996;408997;408998;408999;409000;409001 250611;250612;250613;250614;250615;250616;250617;250618;250619;250620;250621;250622;250623;250624 250618 12 VMGFIGGTSDR Unmodified 1138.5441 0.54409322 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.223 27.01 2 2.8908E-07 9761 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 159.58 155.6 459370000 8347500 11156000 9493400 0 0 0 5090600 0 4200600 96327000 85108000 86447000 10792000 10928000 9482000 5614800 3456400 3474100 10085000 11539000 11446000 24145000 22881000 29353000 22010 936 21328 409002;409003;409004;409005;409006;409007;409008;409009;409010;409011;409012;409013;409014;409015;409016;409017;409018;409019;409020;409021 250625;250626;250627;250628;250629;250630;250631;250632 250631 8 VMGFIGGTSDRPAPISDK Unmodified 1846.9247 0.92473315 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 29.264 27.983 2;3 3.8664E-36 10850 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 229.97 220.02 7017400000 126250000 115780000 124990000 0 1138900 917250 51313000 43400000 45023000 1288900000 1243800000 1354700000 133690000 135070000 138780000 129730000 84211000 88610000 145690000 154320000 159230000 459990000 492180000 499670000 22011 936 21329 409022;409023;409024;409025;409026;409027;409028;409029;409030;409031;409032;409033;409034;409035;409036;409037;409038;409039;409040;409041;409042;409043;409044;409045;409046;409047;409048;409049;409050;409051;409052;409053;409054;409055;409056;409057;409058;409059;409060;409061;409062;409063;409064 250633;250634;250635;250636;250637;250638;250639;250640;250641;250642;250643;250644;250645;250646;250647;250648;250649;250650;250651;250652;250653;250654;250655;250656;250657;250658;250659;250660;250661;250662;250663;250664;250665;250666;250667;250668;250669;250670;250671;250672;250673;250674;250675 250641 43 VMGFIGGTSDRPAPISDK Oxidation (M) 1862.9196 0.91964777 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 1 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 4 4 4 1 1 1 1 1 1 4 2 4 25.927 24.614 2;3 3.6795E-07 8672 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 107.03 91.39 413560000 7343600 0 6006300 0 0 0 12693000 10778000 15514000 104190000 79645000 84060000 0 0 3980200 1581300 1343400 1515100 9625900 0 12616000 25849000 13761000 23065000 22012 936 21329 409065;409066;409067;409068;409069;409070;409071;409072;409073;409074;409075;409076;409077;409078;409079;409080;409081;409082;409083;409084;409085;409086;409087;409088;409089;409090;409091;409092;409093;409094;409095;409096;409097 250676;250677;250678;250679;250680;250681;250682;250683;250684;250685;250686;250687;250688;250689;250690;250691;250692;250693;250694;250695;250696 250689 430 21 VMGFIGGTSDRPAPISDKEVDAIMNR Oxidation (M) 2791.3633 0.36329867 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 1 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 10 10 10 1 6 4 3 1 13 12 10 37.342 35.486 3;4 8.8178E-23 13998 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 175.97 169.02 10019000000 0 4365400 0 1066200 0 0 0 0 0 2990000000 2107800000 2201800000 0 3606800 0 118160000 125220000 88756000 4366000 0 0 767230000 790180000 816880000 22013 936 21330 409098;409099;409100;409101;409102;409103;409104;409105;409106;409107;409108;409109;409110;409111;409112;409113;409114;409115;409116;409117;409118;409119;409120;409121;409122;409123;409124;409125;409126;409127;409128;409129;409130;409131;409132;409133;409134;409135;409136;409137;409138;409139;409140;409141;409142;409143;409144;409145;409146;409147;409148;409149;409150;409151;409152;409153;409154;409155;409156;409157;409158;409159;409160;409161;409162;409163;409164;409165;409166;409167;409168;409169;409170;409171;409172;409173;409174;409175;409176;409177;409178;409179 250697;250698;250699;250700;250701;250702;250703;250704;250705;250706;250707;250708;250709;250710;250711;250712;250713;250714;250715;250716;250717;250718;250719;250720;250721;250722;250723;250724;250725;250726;250727;250728;250729;250730;250731;250732;250733;250734;250735;250736;250737;250738;250739;250740;250741;250742;250743;250744;250745;250746;250747;250748;250749;250750;250751;250752;250753;250754;250755;250756;250757;250758;250759;250760;250761;250762;250763;250764;250765;250766;250767;250768;250769;250770;250771;250772;250773;250774;250775;250776;250777;250778;250779;250780;250781;250782;250783;250784;250785;250786;250787;250788;250789;250790;250791;250792;250793;250794;250795;250796;250797;250798;250799;250800 250750 424;430 104 VMGFIGGTSDRPAPISDKEVDAIMNR Unmodified 2775.3684 0.36838405 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 9 13 13 2 2 2 4 4 4 2 2 2 8 7 8 40.704 38.889 2;3;4;5 3.9847E-84 15482 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 357.72 339.62 62104000000 301580000 307040000 253490000 33967000 23992000 35425000 144720000 107850000 113230000 13258000000 11799000000 4410500000 275960000 266320000 258570000 3137600000 2730600000 3021700000 336220000 315950000 285510000 7292700000 6572900000 6821000000 22014 936 21330 409180;409181;409182;409183;409184;409185;409186;409187;409188;409189;409190;409191;409192;409193;409194;409195;409196;409197;409198;409199;409200;409201;409202;409203;409204;409205;409206;409207;409208;409209;409210;409211;409212;409213;409214;409215;409216;409217;409218;409219;409220;409221;409222;409223;409224;409225;409226;409227;409228;409229;409230;409231;409232;409233;409234;409235;409236;409237;409238;409239;409240;409241;409242;409243;409244;409245;409246;409247;409248;409249;409250;409251;409252;409253;409254;409255;409256;409257;409258;409259;409260;409261;409262;409263;409264;409265;409266;409267;409268;409269;409270;409271;409272;409273;409274;409275;409276;409277;409278;409279 250801;250802;250803;250804;250805;250806;250807;250808;250809;250810;250811;250812;250813;250814;250815;250816;250817;250818;250819;250820;250821;250822;250823;250824;250825;250826;250827;250828;250829;250830;250831;250832;250833;250834;250835;250836;250837;250838;250839;250840;250841;250842;250843;250844;250845;250846;250847;250848;250849;250850;250851;250852;250853;250854;250855;250856;250857;250858;250859;250860;250861;250862;250863;250864;250865;250866;250867;250868;250869;250870;250871;250872;250873;250874;250875;250876;250877;250878;250879;250880;250881;250882;250883;250884;250885;250886;250887;250888;250889;250890;250891;250892;250893;250894;250895;250896;250897;250898;250899;250900;250901;250902;250903 250833 102 VMGFIGGTSDRPAPISDKEVDAIMNR 2 Oxidation (M) 2807.3582 0.35821329 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 2 2 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 3 4 5 1 1 2 5 4 33.912 31.964 3;4 6.8739E-05 14165 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 73.546 70.205 369280000 0 0 0 1380500 0 0 0 0 0 50733000 106110000 118000000 0 0 0 1035300 0 991760 0 0 0 9036000 43208000 38783000 22015 936 21330 409280;409281;409282;409283;409284;409285;409286;409287;409288;409289;409290;409291;409292;409293;409294;409295;409296;409297;409298;409299;409300;409301;409302;409303;409304;409305 250904;250905;250906;250907;250908;250909;250910;250911 250911 424;430 8 VMGQALPELVDQVVEVVQR Unmodified 2108.13 0.1299749 437 P0A8J4 ybeD UPF0250 protein YbeD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 55.349 53.996 2;3 1.4707E-17 25490 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 159.8 146.38 2346000000 151910000 152330000 146110000 71392000 81577000 94444000 153870000 133110000 131680000 41021000 35781000 44253000 154930000 135590000 134670000 15461000 17995000 16097000 199030000 181530000 181200000 21545000 26374000 24065000 22016 437 21331 409306;409307;409308;409309;409310;409311;409312;409313;409314;409315;409316;409317;409318;409319;409320;409321;409322;409323;409324;409325;409326;409327;409328;409329;409330;409331;409332;409333;409334;409335;409336;409337;409338;409339;409340;409341;409342;409343;409344;409345;409346;409347;409348;409349;409350 250912;250913;250914;250915;250916;250917;250918;250919;250920;250921;250922;250923;250924;250925;250926;250927;250928;250929;250930;250931;250932;250933;250934;250935;250936;250937;250938;250939;250940;250941;250942;250943;250944;250945;250946;250947;250948;250949;250950;250951;250952;250953 250952 39 VMGQALPELVDQVVEVVQR Oxidation (M) 2124.1249 0.12488952 437 P0A8J4 ybeD UPF0250 protein YbeD yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 54.924 53.508 3 0.0057089 19668 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 45.094 39.424 34537000 0 0 0 5591800 4195700 4471700 0 0 0 4608000 3922100 3971100 0 0 0 0 0 0 0 0 0 2089700 3525600 2161700 22017 437 21331 409351;409352;409353;409354;409355;409356;409357;409358;409359 250954 250954 212 1 VMHEPMPEVFFTAFGASTLDHELR Unmodified 2760.304 0.30399288 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.237 50.938 4 4.3545E-10 18403 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 119.06 115.91 116720000 0 0 0 13298000 15088000 17529000 3808600 0 4372000 0 5779500 6882100 1813200 0 3434400 0 0 0 4584300 5426200 5966200 11723000 8339900 8679900 22018 1899 21332 409360;409361;409362;409363;409364;409365;409366;409367;409368;409369;409370;409371;409372;409373;409374 250955;250956;250957;250958;250959;250960;250961;250962 250960 8 VMHSGAGHDAQIFAPR Unmodified 1692.8155 0.81545747 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 1 2 2 2 2 15.604 16.029 3;4 1.7815E-07 3914 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 83.692 83.113 100380000 0 0 0 20258000 22212000 21053000 0 0 0 2389300 2060600 2450600 0 0 0 0 0 0 0 0 0 11382000 8638200 9936200 22019 1904 21333 409375;409376;409377;409378;409379;409380;409381;409382;409383;409384;409385;409386;409387;409388;409389;409390;409391 250963;250964;250965;250966 250965 4 VMIAMALLCRPK Unmodified 1401.7659 0.76585343 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 39.537 37.418 3 0.00039192 13068 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 64.439 60.425 74238000 0 0 0 13510000 13688000 14490000 0 0 4851200 5847400 8062400 8009000 0 0 0 0 0 0 0 0 0 2627900 0 3153200 22020 1807 21334 409392;409393;409394;409395;409396;409397;409398;409399;409400 250967;250968;250969;250970;250971;250972;250973 250971 7 VMIDDSSVVIGDVR Unmodified 1503.7603 0.76029359 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.386 37.713 2 1.3538E-05 18380 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 129.82 119.59 396270000 28019000 27620000 24637000 0 0 0 43276000 42365000 39751000 0 0 0 26958000 24472000 22761000 0 0 0 33227000 34114000 49066000 0 0 0 22021 563 21335 409401;409402;409403;409404;409405;409406;409407;409408;409409;409410;409411;409412 250974;250975;250976;250977;250978;250979;250980;250981;250982;250983 250977 10 VMIDNNRPPAVLR Unmodified 1493.8137 0.81366656 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 1 2 1 23.409 22.473 2;3 9.0884E-05 9445 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.111 67.172 728710000 91824000 96936000 92258000 2696600 0 0 141020000 145760000 141280000 5588800 6717600 4618600 0 0 0 0 0 0 0 0 0 0 0 0 22022 498 21336 409413;409414;409415;409416;409417;409418;409419;409420;409421;409422;409423;409424;409425;409426;409427;409428;409429 250984;250985;250986;250987;250988;250989;250990;250991 250991 6 VMIHQPLGGYQGQATDIEIHAR Oxidation (M) 2449.2172 0.21722678 243 P0A6G7 clpP ATP-dependent Clp protease proteolytic subunit yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 1 1 1 1 27.928 26.772 4 1.0948E-06 12215 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 97.271 94.585 614040000 53911000 44010000 39464000 0 0 0 83609000 72355000 72481000 0 0 0 70658000 0 28767000 0 0 0 48866000 49150000 50770000 0 0 0 22023 243 21337 409430;409431;409432;409433;409434;409435;409436;409437;409438;409439;409440;409441 250992;250993;250994;250995;250996;250997;250998;250999;251000;251001;251002;251003 250995 105 12 VMIHQPLGGYQGQATDIEIHAR Unmodified 2433.2223 0.22231216 243 P0A6G7 clpP ATP-dependent Clp protease proteolytic subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 1 3 3 3 1 1 3 3 3 1 1 1 3 3 3 1 1 1 29.307 28.041 3;4;5 2.378E-28 12445 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 193.06 187.81 14968000000 1367700000 1266100000 1076100000 4651400 4914800 4556700 1631600000 1620900000 1612200000 5299200 3244900 0 1027300000 1086900000 916420000 3109700 2494700 3628000 1073100000 1051500000 1193900000 3810200 3456700 4734100 22024 243 21337 409442;409443;409444;409445;409446;409447;409448;409449;409450;409451;409452;409453;409454;409455;409456;409457;409458;409459;409460;409461;409462;409463;409464;409465;409466;409467;409468;409469;409470;409471;409472;409473;409474;409475;409476;409477;409478;409479;409480;409481;409482;409483;409484;409485;409486;409487;409488 251004;251005;251006;251007;251008;251009;251010;251011;251012;251013;251014;251015;251016;251017;251018;251019;251020 251017 16 VMIVGDDDQSIYGWR Unmodified 1752.8141 0.81412007 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 44.904 43.69 2;3 1.8259E-15 16656 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 232.88 230.57 169840000 15097000 10261000 12084000 0 0 0 6560300 6700500 6322100 959710 1239200 998440 7603500 6439300 6456400 21263000 13509000 14036000 10418000 10963000 10553000 3513600 2318900 2548400 22025 80 21338 409489;409490;409491;409492;409493;409494;409495;409496;409497;409498;409499;409500;409501;409502;409503;409504;409505;409506;409507;409508;409509;409510;409511;409512 251021;251022;251023;251024;251025;251026;251027;251028;251029;251030;251031;251032;251033;251034;251035;251036;251037;251038 251021 16 VMLAESMRPEHEGVTILSSSELR Unmodified 2570.2833 0.28325743 1569 P45469 yraR Uncharacterized protein YraR yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 36.165 34.049 4 0.12306 13333 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 25.408 22.485 39780000 10856000 0 0 0 2700100 0 0 0 11036000 4261500 3627800 4198600 0 0 0 0 0 0 0 0 0 3100600 0 0 22026 1569 21339 409513;409514;409515;409516;409517;409518;409519 251039 251039 1 VMLHGCTIGNR Unmodified 1256.6118 0.61179563 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 14.596 15.272 2 2.8727E-10 5010 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 157.91 140.92 91414000 13704000 18736000 11108000 0 0 0 14112000 20111000 13643000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22027 563 21340 409520;409521;409522;409523;409524;409525;409526;409527;409528;409529;409530 251040;251041;251042;251043;251044;251045;251046 251042 7 VMLIDTDYGK Unmodified 1153.5689 0.56891099 1292 P27240 rfaY Lipopolysaccharide core heptose(II) kinase RfaY yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.221 31.403 2 0.0030405 12121 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 75.378 68.228 50480000 0 0 0 1358000 899640 749140 3994600 5971200 0 4135300 3654500 3234200 4351900 0 0 0 0 0 6592500 5369900 4101300 1655300 2091100 2321400 22028 1292 21341 409531;409532;409533;409534;409535;409536;409537;409538;409539;409540;409541;409542;409543;409544;409545 251047;251048;251049;251050 251048 3 VMLKVEELR Unmodified 1115.6373 0.63726532 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.629 22.799 3 0.002438 8160 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 68.846 65.546 75098000 0 0 0 3680600 3928900 4769000 0 0 0 10830000 8541900 8026500 0 0 0 3685500 4474000 4837300 0 0 0 9894100 6992100 5439000 22029 1426 21342 409546;409547;409548;409549;409550;409551;409552;409553;409554;409555;409556;409557 251051 251051 1 VMLLFTNPTDVER Unmodified 1533.7861 0.78611441 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.967 45.751 2 6.4325E-24 17257 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 236.06 236.06 3207000000 67251000 62280000 67199000 0 0 0 371820000 366600000 354540000 179400000 169920000 0 197540000 184800000 175360000 235100000 129590000 139740000 174440000 169060000 162390000 0 0 0 22030 1745 21343 409558;409559;409560;409561;409562;409563;409564;409565;409566;409567;409568;409569;409570;409571;409572;409573;409574 251052;251053;251054;251055;251056;251057;251058;251059;251060;251061;251062;251063;251064;251065;251066 251052 15 VMLLFTNPTDVER Oxidation (M) 1549.781 0.78102903 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 1 0 By MS/MS 1 43.614 41.215 2 0.00025502 16490 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 88.134 79.157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22031 1745 21343 409575 251067 251067 603 1 VMLLGSGELGK Unmodified 1102.6056 0.60563084 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.151 32.703 2 0.00010878 15453 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 118.18 111.35 423940000 119870000 124940000 121880000 0 0 0 5984800 3829000 4000600 0 0 0 5436900 6364700 6753800 0 0 0 9871200 6290200 8714400 0 0 0 22032 1412 21344 409576;409577;409578;409579;409580;409581;409582;409583;409584;409585;409586;409587 251068;251069;251070 251069 3 VMLNAGLSPEHEEK Unmodified 1552.7555 0.75554256 1459 P37177 ptsP Phosphoenolpyruvate-protein phosphotransferase PtsP yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 20.277 20.531 2;3 9.0683E-05 8033 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.184 85.14 215830000 28370000 26294000 25829000 1926100 1966100 1373500 9431500 6495700 8002800 3481100 2838600 3080200 13889000 9863800 12040000 0 0 0 18535000 18680000 16972000 1673200 2599100 2488100 22033 1459 21345 409588;409589;409590;409591;409592;409593;409594;409595;409596;409597;409598;409599;409600;409601;409602;409603;409604;409605;409606;409607;409608;409609;409610;409611;409612;409613 251071;251072;251073;251074;251075;251076 251075 3 VMLQAYDEGR Unmodified 1180.5547 0.55465791 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 23.18 22.46 2 1.2159E-06 9931 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 167.33 151.13 1837300000 52973000 57699000 59975000 3607000 3654700 3370800 146970000 131640000 152920000 10123000 7086700 9285600 189330000 145130000 192520000 3205800 1892500 2250300 204350000 206590000 215370000 11706000 13180000 12470000 22034 644 21346 409614;409615;409616;409617;409618;409619;409620;409621;409622;409623;409624;409625;409626;409627;409628;409629;409630;409631;409632;409633;409634;409635;409636;409637;409638;409639 251077;251078;251079;251080;251081;251082;251083;251084;251085;251086;251087;251088;251089;251090;251091;251092;251093;251094;251095;251096;251097;251098;251099;251100 251083 20 VMLQAYDEGRLDK Unmodified 1536.7606 0.76062794 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 1 1 1 2 2 2 24.008 23.053 2;3 8.6345E-06 8380 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 112.5 110.69 233170000 0 3066100 0 11950000 11583000 13494000 0 0 0 32279000 25888000 29716000 0 0 0 6102700 6367800 6368000 0 0 10144000 23953000 23335000 28926000 22035 644 21347 409640;409641;409642;409643;409644;409645;409646;409647;409648;409649;409650;409651;409652;409653;409654;409655;409656;409657;409658;409659;409660;409661;409662 251101;251102;251103;251104;251105;251106;251107;251108;251109;251110;251111;251112;251113;251114;251115;251116;251117;251118 251104 17 VMLSELFR Unmodified 993.53174 0.53173762 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.345 42.624 2 2.5453E-09 20665 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 214.01 190.99 935700000 28879000 27283000 25012000 7192600 6667900 4848600 66988000 70067000 71227000 31660000 31952000 29011000 61786000 55320000 71089000 0 0 0 117040000 79941000 83042000 24380000 19413000 22902000 22036 1426 21348 409663;409664;409665;409666;409667;409668;409669;409670;409671;409672;409673;409674;409675;409676;409677;409678;409679;409680;409681;409682;409683 251119;251120;251121;251122;251123;251124;251125;251126;251127;251128;251129;251130;251131;251132;251133;251134;251135;251136;251137;251138;251139 251135 21 VMLSELFR Oxidation (M) 1009.5267 0.52665224 1426 P33599 nuoC NADH-quinone oxidoreductase subunit C/D yes yes 0 1 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 40.592 38.855 2 0.12412 18864 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 41.502 37.484 41149000 0 0 0 364530 0 0 5705100 5455900 4548000 0 0 0 2970700 2502000 2833500 0 0 0 5964500 5728800 5076200 0 0 0 22037 1426 21348 409684;409685;409686;409687;409688;409689;409690;409691;409692;409693 251140;251141 251141 0 VMMIDEPAILDQAIAR Unmodified 1784.9165 0.91647665 473 P0A8Y5 yidA Sugar phosphatase YidA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 51.733 50.48 2;3 2.8698E-09 23654 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 132.05 126.73 1023400000 70525000 65253000 68938000 0 0 0 86972000 81036000 83648000 0 0 0 102340000 102980000 89205000 0 0 0 87681000 97600000 85239000 0 1962500 0 22038 473 21349 409694;409695;409696;409697;409698;409699;409700;409701;409702;409703;409704;409705;409706;409707;409708;409709;409710;409711;409712;409713;409714;409715;409716;409717;409718 251142;251143;251144;251145;251146;251147;251148;251149;251150;251151;251152;251153;251154;251155;251156 251154 10 VMMNVGNPDR Unmodified 1131.5165 0.51649826 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.859 19.186 2 1.4716E-06 7530 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 164.57 164.57 1972900000 205600000 209110000 142210000 12171000 9214800 8773500 115320000 139270000 129820000 27728000 20352000 21517000 115390000 114640000 123580000 7441900 4865800 5805600 183030000 173370000 152360000 16550000 16995000 17830000 22039 1210 21350 409719;409720;409721;409722;409723;409724;409725;409726;409727;409728;409729;409730;409731;409732;409733;409734;409735;409736;409737;409738;409739;409740;409741;409742 251157;251158;251159;251160;251161;251162;251163;251164;251165;251166;251167;251168;251169;251170;251171;251172;251173;251174;251175;251176;251177;251178 251162 22 VMMNVGNPDR Oxidation (M) 1147.5114 0.51141288 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 1 0 By MS/MS By matching By matching By matching 1 1 1 1 15.414 16.228 2 0.051014 5565 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 44.98 38.156 10432000 4353400 0 0 504910 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3224300 0 2349500 0 0 0 22040 1210 21350 409743;409744;409745;409746 251179 251179 0 VMMSSLR Unmodified 822.40918 0.40917964 69 P02916 malF Maltose transport system permease protein MalF yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 18.199 18.64 2 0.0016502 7062 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 126.24 122.85 184540000 2446200 2873900 0 0 0 0 20961000 15423000 15936000 0 9822800 0 18236000 0 16450000 1180400 886930 0 26357000 32841000 21121000 0 0 0 22041 69 21351 409747;409748;409749;409750;409751;409752;409753;409754;409755;409756;409757;409758;409759 251180;251181;251182;251183;251184 251182 4 VMNDFHHQR Unmodified 1182.5353 0.53525987 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS 1 10.667 11.414 2 0.059785 2692 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 54.549 50.615 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22042 1355 21352 409760 251185 251185 1 VMNLDRFDLL Unmodified 1234.638 0.63799361 1086 P13029 katG Catalase-peroxidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.347 50.138 2 7.3213E-05 23568 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 162.97 149.62 1248400000 118950000 131890000 129580000 1931600 2404000 1401700 155480000 155010000 155700000 2358400 0 4366400 66883000 60346000 62168000 0 863730 0 66190000 67724000 65114000 0 0 0 22043 1086 21353 409761;409762;409763;409764;409765;409766;409767;409768;409769;409770;409771;409772;409773;409774;409775;409776;409777;409778 251186;251187;251188;251189;251190;251191;251192;251193;251194;251195;251196;251197;251198 251196 13 VMNMQAK Unmodified 820.39353 0.39352958 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 3 2 2 2 2 2 3 2 2 1 2 2 12.037 12.664 1;2 0.00010963 2857 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 149.06 132.13 2967000000 415990000 396590000 324440000 6917800 6340400 6013700 124410000 146830000 124280000 12173000 11609000 11662000 172640000 191180000 200610000 12963000 10533000 12570000 248210000 239330000 245260000 15035000 14998000 16368000 22044 1726 21354 409779;409780;409781;409782;409783;409784;409785;409786;409787;409788;409789;409790;409791;409792;409793;409794;409795;409796;409797;409798;409799;409800;409801;409802;409803;409804;409805;409806;409807;409808;409809;409810;409811;409812;409813;409814;409815;409816;409817;409818;409819;409820;409821 251199;251200;251201;251202;251203;251204;251205;251206;251207;251208;251209 251208 9 VMNMQAK Oxidation (M) 836.38844 0.3884442 1726 P68919 rplY 50S ribosomal protein L25 yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.157 10.965 2 0.16726 2412 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 48.174 24.378 94239000 21036000 21276000 14291000 0 0 0 11343000 1808000 1756700 0 0 0 12226000 2884500 509380 0 0 0 1805900 0 5302500 0 0 0 22045 1726 21354 409822;409823;409824;409825;409826;409827;409828;409829;409830;409831;409832 251210 251210 1 VMPFFEQHK Unmodified 1161.5641 0.56410038 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 3 2 1 2 2 25.833 24.716 2;3 0.00016273 10553 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 112.84 106.88 4806500000 1116700000 1083200000 968400000 2304100 2046400 1916800 426280000 395970000 455490000 0 0 1409500 48304000 46564000 48458000 0 0 0 65897000 73933000 69610000 0 0 0 22046 1373 21355 409833;409834;409835;409836;409837;409838;409839;409840;409841;409842;409843;409844;409845;409846;409847;409848;409849;409850;409851;409852;409853;409854;409855;409856;409857;409858;409859;409860 251211;251212;251213;251214;251215;251216;251217;251218;251219;251220;251221;251222;251223;251224;251225;251226;251227;251228;251229;251230;251231;251232 251229 22 VMPFFEQHK Oxidation (M) 1177.559 0.559015 1373 P31658 hchA Molecular chaperone Hsp31 and glyoxalase 3 yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 19.035 19.469 2;3 0.0023878 7183 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.221 72.109 57885000 18863000 9574600 13941000 0 0 0 8806400 6698900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22047 1373 21355 409861;409862;409863;409864;409865;409866;409867;409868;409869;409870 251233;251234;251235;251236;251237 251233 539 5 VMPSDIPLK Unmodified 998.54705 0.54705333 1431 P33650 feoB Ferrous iron transport protein B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 28.646 27.327 2 0.072871 12722 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 47.349 27.872 47213000 3660000 0 0 956490 0 0 4050700 3550400 2545300 0 0 0 4193100 5678700 4103100 0 0 0 7173400 5607700 5694700 0 0 0 22048 1431 21356 409871;409872;409873;409874;409875;409876;409877;409878;409879;409880;409881 251238;251239 251238 2 VMPSVVSINVEGSTTVNTPR Unmodified 2086.0729 0.072853952 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 2 2 2 1 1 2 1 1 2 2 2 40.232 38.288 2;3 6.9546E-18 19096 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 211.51 211.51 227050000 5289200 0 5635800 6005600 5680200 6299300 12051000 17914000 19436000 15348000 16473000 16076000 17700000 9792900 8443400 0 0 0 20615000 8648400 7837400 11398000 9001800 7401000 22049 1044 21357 409882;409883;409884;409885;409886;409887;409888;409889;409890;409891;409892;409893;409894;409895;409896;409897;409898;409899;409900;409901;409902;409903;409904;409905;409906;409907;409908;409909;409910;409911;409912;409913;409914 251240;251241;251242;251243;251244;251245;251246;251247;251248;251249;251250;251251;251252;251253;251254;251255;251256;251257;251258;251259 251244 17 VMQAGAAGYLSK Unmodified 1194.6067 0.60669348 848 P0AED5 uvrY Response regulator UvrY yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 21.701 21.68 2 0.0083652 7369 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 74.944 71.357 23288000 0 6890800 5840500 995110 0 0 0 0 0 2251200 1652600 0 4461800 0 0 0 0 0 0 0 0 0 0 1196300 22050 848 21358 409915;409916;409917;409918;409919;409920;409921 251260 251260 1 VMQALPDVEQAVTHACVINQAAATGGDAR Unmodified 2992.4495 0.44948791 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 43.993 42.613 3 4.7153E-11 20814 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 115.76 113.45 85254000 13228000 0 0 0 0 0 0 0 0 0 0 0 11433000 9030300 8020900 0 0 0 12078000 16739000 14725000 0 0 0 22051 1070 21359 409922;409923;409924;409925;409926;409927;409928 251261;251262;251263;251264 251261 4 VMQAQGSQLTNK Unmodified 1303.6554 0.65543458 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.731 13.566 2 3.8835E-08 4004 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 188.04 186.57 10283000000 1512400000 1545000000 1626800000 4623400 4822300 5219000 641380000 620460000 669260000 4822300 0 0 584240000 522550000 598660000 0 0 0 672940000 683750000 585760000 0 0 0 22052 391 21360 409929;409930;409931;409932;409933;409934;409935;409936;409937;409938;409939;409940;409941;409942;409943;409944 251265;251266;251267;251268;251269;251270;251271;251272;251273;251274;251275;251276;251277;251278 251275 14 VMQAQGSQLTNK Oxidation (M) 1319.6503 0.65034921 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 1 0 By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.297 12.129 2 3.4415E-08 3191 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 166.19 162.31 699160000 105880000 82221000 86419000 0 0 0 55305000 49385000 50074000 0 0 0 40121000 27265000 28790000 0 0 0 65816000 55429000 52452000 0 0 0 22053 391 21360 409945;409946;409947;409948;409949;409950;409951;409952;409953;409954;409955;409956 251279;251280;251281;251282;251283 251280 176 5 VMSDAFIK Unmodified 909.46299 0.46298935 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 25.344 24.345 2 0.015552 9025 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 69.998 57.446 86963000 0 0 0 0 4133700 0 0 0 0 17215000 17587000 20397000 0 0 0 3589000 2117400 2679300 0 0 0 11838000 0 7406000 22054 146 21361 409957;409958;409959;409960;409961;409962;409963;409964;409965 251284;251285;251286;251287 251286 4 VMSILDAGETGK Unmodified 1219.6118 0.61183843 1780 P75825 hcp Hydroxylamine reductase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 30.844 29.415 2 2.7496E-05 14086 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 117.02 95.427 87822000 0 0 0 0 0 0 11206000 12539000 11975000 0 0 0 7895500 11660000 8529800 0 0 0 8230800 9440400 6344500 0 0 0 22055 1780 21362 409966;409967;409968;409969;409970;409971;409972;409973;409974 251288;251289;251290 251288 3 VMSLLEPTK Unmodified 1016.5576 0.55761802 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 29.603 28.33 1;2 0.00037215 12438 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 111.95 107.27 988830000 60096000 63365000 57586000 0 0 0 71960000 83301000 65472000 0 0 0 97651000 96747000 89714000 0 0 0 93033000 102540000 107370000 0 0 0 22056 57 21363 409975;409976;409977;409978;409979;409980;409981;409982;409983;409984;409985;409986;409987;409988;409989;409990;409991;409992;409993;409994;409995;409996;409997 251291;251292;251293;251294;251295;251296;251297;251298;251299;251300;251301;251302 251302 11 VMSLLEPTKK Unmodified 1144.6526 0.65258104 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 20.183 20.587 2;3 0.00010624 7893 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 101.38 83.907 1841600000 130050000 129430000 109570000 781590 682640 487150 145790000 136830000 152740000 0 0 0 191340000 162590000 149710000 0 0 0 177940000 164310000 189390000 0 0 0 22057 57 21364 409998;409999;410000;410001;410002;410003;410004;410005;410006;410007;410008;410009;410010;410011;410012;410013;410014;410015;410016;410017;410018;410019;410020;410021;410022;410023;410024 251303;251304;251305;251306;251307;251308;251309;251310;251311;251312;251313;251314;251315;251316;251317;251318;251319;251320;251321;251322;251323 251317 20 VMSMVDSVLLVVDAFDGPMPQTR Unmodified 2506.227 0.22698811 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.795 54.335 3 0.00052275 25919 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 65.425 61.354 239460000 10186000 0 0 9934300 0 5658300 22257000 16185000 22193000 0 0 0 26992000 27718000 28074000 0 0 0 25617000 22870000 21774000 0 0 0 22058 1388 21365 410025;410026;410027;410028;410029;410030;410031;410032;410033;410034;410035;410036 251324;251325;251326 251326 3 VMSTGQTYNADR Unmodified 1341.5983 0.59831364 1633 P60785 lepA Elongation factor 4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.192 13.798 2 2.3493E-23 3400 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 236.56 222.97 810300000 48711000 46943000 48456000 6213300 4734500 5363300 38941000 39464000 30820000 10291000 8618600 9611400 42980000 48714000 37616000 41634000 41539000 38497000 48001000 37261000 43110000 48540000 42032000 42211000 22059 1633 21366 410037;410038;410039;410040;410041;410042;410043;410044;410045;410046;410047;410048;410049;410050;410051;410052;410053;410054;410055;410056;410057;410058;410059;410060 251327;251328;251329;251330;251331;251332;251333;251334;251335;251336;251337;251338;251339;251340;251341;251342;251343;251344;251345;251346;251347 251327 21 VMTDNGWFAAR Unmodified 1266.5815 0.58154136 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.684 33.219 2 0.0015948 15786 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.062 86.196 500730000 44186000 34775000 0 0 0 0 51698000 50466000 50783000 0 0 0 39962000 38494000 34503000 0 0 0 51494000 47795000 56576000 0 0 0 22060 1450 21367 410061;410062;410063;410064;410065;410066;410067;410068;410069;410070;410071 251348;251349;251350;251351 251350 0 VMTVGTHGTTYGGNPLASAVAGK Unmodified 2188.0947 0.094652027 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 30.233 28.902 2;3 2.2026E-53 13365 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 308.36 305.41 2350200000 694180000 875400000 716310000 2769900 0 0 6722400 4291100 3961900 0 0 0 6076100 4036200 3127200 0 0 0 12155000 11689000 9500500 0 0 0 22061 1919 21368 410072;410073;410074;410075;410076;410077;410078;410079;410080;410081;410082;410083;410084;410085;410086;410087 251352;251353;251354;251355;251356;251357 251355 6 VMVDLFR Unmodified 878.46841 0.46840908 1207 P23484 fecI Probable RNA polymerase sigma factor FecI yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 37.53 37.047 2 0.011149 12774 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 86.086 41.476 6447500 0 0 0 0 0 0 0 0 0 0 0 664110 0 0 0 2563000 1403500 1816800 0 0 0 0 0 0 22062 1207 21369 410088;410089;410090;410091 251358 251358 1 VMVEGEDEAQVTEFAHR Oxidation (M) 1961.8789 0.87890517 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 1 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 26.487 25.38 3 8.8722E-05 11800 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 74.772 71.484 78809000 0 9869100 0 0 0 0 10573000 11701000 9988800 0 0 0 6179800 8825500 5512300 0 0 0 8576800 0 7583600 0 0 0 22063 1360 21370 410092;410093;410094;410095;410096;410097;410098;410099;410100 251359 251359 536 1 VMVEGEDEAQVTEFAHR Unmodified 1945.884 0.88399055 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1 2 2 2 1 2 2 2 28.525 27.322 2;3 4.5563E-24 12139 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 204.85 201.53 2204900000 161400000 144640000 131070000 0 0 0 186670000 179430000 185830000 0 0 2209300 174990000 186620000 154440000 0 0 645580 229470000 248540000 218910000 0 0 0 22064 1360 21370 410101;410102;410103;410104;410105;410106;410107;410108;410109;410110;410111;410112;410113;410114;410115;410116;410117;410118;410119;410120;410121;410122;410123;410124;410125 251360;251361;251362;251363;251364;251365;251366;251367;251368;251369;251370;251371;251372;251373;251374;251375;251376;251377 251373 18 VMVEHEILPR Unmodified 1221.654 0.65397802 1945 P77808 yfaY NMN amidohydrolase-like protein YfaY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.5 21.696 3 0.00013744 8698 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 96.342 93.145 445400000 40632000 42631000 33092000 390330 401330 564660 38735000 35386000 36595000 550090 0 0 39248000 26594000 31684000 0 0 0 40242000 44137000 34515000 0 0 0 22065 1945 21371 410126;410127;410128;410129;410130;410131;410132;410133;410134;410135;410136;410137;410138;410139;410140;410141 251378;251379;251380;251381;251382;251383;251384;251385;251386;251387;251388;251389 251383 12 VMVIGAGVAGLAAIGAANSLGAIVR Unmodified 2250.2882 0.28820688 146 P07001 pntA NAD(P) transhydrogenase subunit alpha yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.267 53.81 3 6.702E-16 21735 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 153.36 149.83 190440000 0 4304700 2733400 6253700 7756800 6400500 10179000 10582000 12272000 19416000 21485000 18754000 8533800 8212200 11941000 0 0 0 9946800 8009400 9739900 5663800 0 8257300 22066 146 21372 410142;410143;410144;410145;410146;410147;410148;410149;410150;410151;410152;410153;410154;410155;410156;410157;410158;410159;410160 251390;251391;251392;251393;251394 251392 4 VMVMVDDK Unmodified 935.44562 0.44562473 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.593 20.904 2 0.0029529 7791 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 96.19 88.777 2007000000 190400000 172700000 146440000 1292700 1203800 1107200 161480000 155420000 159620000 0 3073100 3029300 163520000 145850000 186540000 0 0 0 168310000 188260000 158760000 0 0 0 22067 62 21373 410161;410162;410163;410164;410165;410166;410167;410168;410169;410170;410171;410172;410173;410174;410175;410176;410177 251395;251396;251397;251398;251399;251400;251401;251402;251403;251404;251405 251405 11 VMVMVDDKELR Unmodified 1333.6734 0.67339283 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.863 23.905 3 0.00048162 8733 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 83.397 76.358 264580000 21987000 18456000 19158000 0 0 0 19424000 18607000 18051000 12249000 10144000 12326000 12072000 14594000 14026000 2370500 4683900 3371900 20767000 21028000 21265000 0 0 0 22068 62 21374 410178;410179;410180;410181;410182;410183;410184;410185;410186;410187;410188;410189;410190;410191;410192;410193;410194;410195 251406;251407;251408;251409 251406 3 VMVSGTGHTGK Unmodified 1072.5335 0.53352853 1672 P64463 ydfZ Putative selenoprotein YdfZ yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 1 1 1 10.419 11.23 2;3 1.1838E-05 2553 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 145.17 136.31 3502000000 158510000 135620000 57838000 0 0 0 627550000 679000000 576150000 0 0 0 418440000 375840000 352960000 0 0 0 39011000 39593000 41463000 0 0 0 22069 1672 21375 410196;410197;410198;410199;410200;410201;410202;410203;410204;410205;410206;410207;410208;410209;410210;410211;410212;410213;410214;410215 251410;251411;251412;251413;251414;251415;251416;251417;251418;251419;251420;251421;251422;251423;251424;251425 251413 15 VMVSGTGHTGK Oxidation (M) 1088.5284 0.52844316 1672 P64463 ydfZ Putative selenoprotein YdfZ yes yes 0 1 0 By matching By matching By matching By MS/MS 1 1 1 1 10.23 11.034 2 0.037 2348 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 47.198 44.495 28956000 0 0 0 0 0 0 5048500 5536700 6076600 0 0 0 12295000 0 0 0 0 0 0 0 0 0 0 0 22070 1672 21375 410216;410217;410218;410219 251426 251426 588 0 VMVTSHLGR Oxidation (M) 1014.528 0.52804923 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 1 0 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 12.129 12.891 2 0.00012886 3683 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 135.84 108.32 195300000 0 5661500 0 0 0 0 53245000 57727000 50318000 0 0 0 0 0 0 0 0 0 28345000 0 0 0 0 0 22071 321 21376 410220;410221;410222;410223;410224 251427;251428;251429 251427 148 3 VMVTSHLGR Unmodified 998.53313 0.5331346 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.265 14.131 2 4.8512E-05 4308 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 149.4 145.04 4477600000 337020000 379110000 386960000 0 0 0 487870000 570190000 520230000 0 0 0 306660000 304830000 272520000 0 0 0 344400000 310690000 257100000 0 0 0 22072 321 21376 410225;410226;410227;410228;410229;410230;410231;410232;410233;410234;410235;410236 251430;251431;251432;251433;251434;251435;251436;251437 251431 4 VMVTSHLGRPTEGEYNEEFSLLPVVNYLK Unmodified 3320.6751 0.67511398 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 1 1 2 3 3 1 1 1 3 2 2 3 3 3 1 1 50.25 48.838 3;4;5 1.65E-81 24219 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 292.47 287.42 20666000000 2638900000 2365800000 1969300000 12256000 12303000 13645000 475070000 2680400000 2600900000 13737000 11954000 14147000 1449000000 250820000 286450000 0 0 0 2117600000 1816200000 1925600000 5434800 6087400 0 22073 321 21377 410237;410238;410239;410240;410241;410242;410243;410244;410245;410246;410247;410248;410249;410250;410251;410252;410253;410254;410255;410256;410257;410258;410259;410260;410261;410262;410263;410264;410265;410266;410267;410268;410269;410270;410271;410272;410273;410274;410275;410276;410277 251438;251439;251440;251441;251442;251443;251444;251445;251446;251447;251448;251449;251450;251451;251452;251453;251454;251455;251456;251457;251458;251459;251460;251461;251462;251463;251464;251465;251466;251467;251468;251469;251470;251471;251472;251473 251439 36 VMVTSHLGRPTEGEYNEEFSLLPVVNYLK Oxidation (M) 3336.67 0.6700286 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 1 1 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 49.456 48.093 3;4 3.2854E-41 23810 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 203.78 201.7 1359700000 109850000 85288000 91051000 1505100 0 637240 245680000 204300000 172950000 0 0 0 71250000 60241000 64882000 0 0 0 100740000 79093000 72211000 0 0 0 22074 321 21377 410278;410279;410280;410281;410282;410283;410284;410285;410286;410287;410288;410289;410290;410291;410292;410293;410294;410295;410296;410297;410298;410299;410300;410301;410302;410303 251474;251475;251476;251477;251478;251479;251480;251481;251482;251483 251477 148 10 VMWHAAQIR Unmodified 1110.5757 0.57566812 128 P06715 gor Glutathione reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 18.609 19.126 2;3 0.0010813 7472 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 73.208 73.208 884790000 64034000 69175000 59151000 0 0 0 98116000 86866000 76442000 611740 742130 0 81110000 59401000 54690000 0 0 0 82262000 81339000 70855000 0 0 0 22075 128 21378 410304;410305;410306;410307;410308;410309;410310;410311;410312;410313;410314;410315;410316;410317;410318;410319;410320;410321;410322;410323;410324;410325;410326;410327;410328;410329 251484;251485;251486;251487;251488;251489;251490;251491;251492;251493;251494;251495;251496;251497;251498;251499;251500;251501;251502;251503;251504;251505;251506 251487 23 VNAALESCR Unmodified 1018.4866 0.48657834 322 P0A7A2 gpmB Probable phosphoglycerate mutase GpmB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.678 13.455 2 5.3296E-16 4003 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 236.1 224.69 359130000 38668000 33518000 26139000 0 0 0 32894000 28790000 31921000 0 0 0 25554000 25824000 17769000 1055600 0 0 30188000 35640000 31166000 0 0 0 22076 322 21379 410330;410331;410332;410333;410334;410335;410336;410337;410338;410339;410340;410341;410342 251507;251508;251509;251510;251511;251512;251513;251514;251515 251507 9 VNADGTLATTGHPEALGSALTHK Unmodified 2260.1448 0.14477334 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 24.919 23.842 3;4 1.4659E-06 10585 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 96.708 95.293 2193400000 211980000 223090000 196940000 1812200 0 0 204440000 198180000 174230000 1324300 1521500 689540 155700000 130120000 130460000 0 0 0 199790000 180560000 181730000 0 867360 0 22077 289 21380 410343;410344;410345;410346;410347;410348;410349;410350;410351;410352;410353;410354;410355;410356;410357;410358;410359;410360;410361;410362;410363;410364;410365;410366;410367;410368;410369;410370;410371 251516;251517;251518;251519;251520;251521;251522;251523;251524;251525;251526;251527;251528;251529 251522 14 VNADIVNK Unmodified 871.47633 0.47633123 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.462 14.231 2 0.00020659 4143 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 152.47 104.73 1674000000 126970000 115810000 109790000 0 0 0 193190000 177620000 149680000 0 0 0 107980000 100440000 100250000 0 0 0 159360000 161540000 167020000 2129200 2199400 0 22078 60 21381 410372;410373;410374;410375;410376;410377;410378;410379;410380;410381;410382;410383;410384;410385 251530;251531;251532;251533;251534;251535;251536;251537;251538;251539;251540 251538 11 VNAEYVEAFTK Unmodified 1269.6241 0.62411768 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.674 30.284 2 2.4433E-07 14523 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 162.8 160.45 8069600000 302110000 283150000 265380000 33164000 33769000 29003000 608190000 624570000 597630000 179090000 131420000 143900000 631180000 638680000 631880000 36271000 24539000 24559000 846570000 861570000 800240000 111680000 104200000 126850000 22079 645 21382 410386;410387;410388;410389;410390;410391;410392;410393;410394;410395;410396;410397;410398;410399;410400;410401;410402;410403;410404;410405;410406;410407;410408;410409 251541;251542;251543;251544;251545;251546;251547;251548;251549;251550;251551;251552;251553;251554;251555;251556;251557;251558;251559;251560;251561;251562;251563;251564 251548 24 VNAEYVEAFTKGEVK Unmodified 1682.8516 0.85155143 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 31.416 29.992 2;3 5.3124E-07 11481 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 156.81 147.05 558470000 0 0 0 28727000 31139000 31555000 0 0 0 87205000 71939000 72989000 0 0 0 20368000 18168000 22889000 0 0 0 57593000 60165000 55739000 22080 645 21383 410410;410411;410412;410413;410414;410415;410416;410417;410418;410419;410420;410421;410422;410423;410424;410425;410426;410427;410428;410429;410430;410431;410432;410433 251565;251566;251567;251568;251569;251570;251571;251572;251573;251574;251575;251576;251577;251578;251579;251580;251581;251582 251571 15 VNAFFAPDYAGIIQGMR Unmodified 1868.9243 0.92433922 1124 P16682 phnD Phosphonates-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 53.759 52.308 2;3 7.2065E-14 25877 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 207.88 197.83 1163700000 0 0 0 0 0 0 69627000 70722000 84129000 0 0 0 114840000 113980000 100100000 0 0 0 216050000 199040000 195250000 0 0 0 22081 1124 21384 410434;410435;410436;410437;410438;410439;410440;410441;410442;410443;410444;410445;410446;410447;410448;410449;410450;410451 251583;251584;251585;251586;251587;251588;251589;251590;251591;251592;251593;251594;251595;251596 251584 14 VNAGHGLTYHNVK Unmodified 1408.7211 0.72114638 319 P0A794 pdxJ Pyridoxine 5'-phosphate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 2 1 3 3 2 2 1 1 3 3 3 3 3 3 1 11.582 12.369 2;3;4 2.6694E-12 3257 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 226.33 196.14 1985800000 194700000 140390000 123130000 3741200 4267100 1436700 203210000 208710000 108640000 6402600 3568500 5370300 131940000 136460000 124120000 0 0 0 212970000 189510000 186250000 958120 0 0 22082 319 21385 410452;410453;410454;410455;410456;410457;410458;410459;410460;410461;410462;410463;410464;410465;410466;410467;410468;410469;410470;410471;410472;410473;410474;410475;410476;410477;410478;410479;410480;410481;410482;410483;410484;410485;410486;410487;410488;410489;410490;410491;410492;410493;410494;410495;410496 251597;251598;251599;251600;251601;251602;251603;251604;251605;251606;251607;251608;251609;251610;251611;251612;251613;251614;251615;251616;251617;251618;251619;251620;251621 251597 25 VNAIAAPTR Unmodified 911.51886 0.51886475 1569 P45469 yraR Uncharacterized protein YraR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 14.81 15.232 2 0.004522 3660 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 77.732 69.392 23224000 0 0 0 2297500 1939800 1682900 0 0 0 4683200 4078400 4712000 0 0 0 0 0 0 0 0 0 1109200 1408900 1312600 22083 1569 21386 410497;410498;410499;410500;410501;410502;410503;410504;410505 251622;251623;251624;251625;251626;251627 251625 6 VNAICPGYVR Unmodified 1147.5808 0.58081308 1471 P37440 ucpA Oxidoreductase UcpA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.88 21.798 2 0.00046355 9025 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 101.41 94.676 889390000 77100000 74425000 58789000 0 577190 0 91328000 82609000 92811000 0 1392300 831030 66645000 58242000 48247000 0 0 0 83392000 78643000 74357000 0 0 0 22084 1471 21387 410506;410507;410508;410509;410510;410511;410512;410513;410514;410515;410516;410517;410518;410519;410520 251628;251629;251630;251631;251632;251633;251634 251629 1 VNAISAGPIR Unmodified 996.57163 0.5716286 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.33 20.511 2 3.6285E-12 8013 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.7 180.8 13121000000 1149200000 1095000000 925410000 6240200 6484600 6664800 1092300000 1153100000 1118400000 7537200 5743700 5001600 1004900000 904960000 896240000 3615700 2254400 2806100 1145400000 1342100000 1230400000 5871200 5287900 5871800 22085 869 21388 410521;410522;410523;410524;410525;410526;410527;410528;410529;410530;410531;410532;410533;410534;410535;410536;410537;410538;410539;410540;410541;410542;410543;410544 251635;251636;251637;251638;251639;251640;251641;251642;251643;251644;251645;251646;251647;251648;251649;251650;251651;251652;251653;251654;251655;251656;251657 251652 23 VNALLADK Unmodified 842.48617 0.48616764 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS 1 1 17.326 18.179 2 0.096102 6380 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 50.04 20.891 29309000 0 0 0 0 0 0 0 0 0 0 0 0 13925000 15383000 0 0 0 0 0 0 0 0 0 0 22086 1376 21389 410545;410546 251658;251659 251658 2 VNAQQAR Unmodified 785.4144 0.41439968 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 4.8479 5.7803 2 0.00043229 1145 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 154.29 95.631 315980000 0 0 0 0 1905500 1821600 0 0 54419000 0 0 0 42566000 43182000 37463000 0 0 0 51764000 42599000 40263000 0 0 0 22087 124 21390 410547;410548;410549;410550;410551;410552;410553;410554;410555 251660;251661 251661 1 VNASTLK Unmodified 731.41775 0.41775372 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 11.33 12.01 2 0.0092255 3156 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 88.029 47.108 749470000 83764000 61621000 64100000 0 0 0 56669000 60939000 57964000 0 0 0 70690000 62394000 54448000 6164500 5333700 6326000 75098000 80927000 3031500 0 0 0 22088 62 21391 410556;410557;410558;410559;410560;410561;410562;410563;410564;410565;410566;410567;410568;410569;410570;410571;410572 251662;251663;251664;251665 251664 4 VNASTLKEPEEIK Unmodified 1456.7773 0.77732386 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 2 2 2 2 1 1 2 2 1 17.32 17.427 2;3 5.1928E-17 6144 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 203.39 170.64 374580000 102930000 99161000 85669000 0 0 0 0 0 0 20796000 17237000 13741000 0 0 0 6059500 4434500 4461300 0 0 0 8625500 8235900 3233500 22089 62 21392 410573;410574;410575;410576;410577;410578;410579;410580;410581;410582;410583;410584;410585;410586;410587;410588;410589;410590 251666;251667;251668;251669;251670;251671;251672 251672 7 VNASWGISGDGK Unmodified 1189.5728 0.57275081 1209 P23524 garK Glycerate 2-kinase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 23.552 22.651 2 5.5677E-05 9827 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 106.29 93.248 34611000 0 0 0 0 0 0 7100100 0 5301600 0 0 0 0 0 0 0 0 0 7412300 6383100 8413800 0 0 0 22090 1209 21393 410591;410592;410593;410594;410595 251673;251674 251674 1 VNDEGIIEDAR Unmodified 1229.5888 0.58879481 721 P0ACD4 iscU Iron-sulfur cluster assembly scaffold protein IscU yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.074 22.406 2 2.9571E-14 9663 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 211.27 200.4 5115000000 466630000 433740000 441190000 6043700 8873800 5355100 363340000 373750000 418160000 6051400 6635600 7995900 348780000 317210000 327300000 5514100 2835100 4403100 519680000 551640000 476330000 8314500 7693700 7501500 22091 721 21394 410596;410597;410598;410599;410600;410601;410602;410603;410604;410605;410606;410607;410608;410609;410610;410611;410612;410613;410614;410615;410616;410617;410618;410619 251675;251676;251677;251678;251679;251680;251681;251682;251683;251684;251685;251686;251687;251688;251689 251683 14 VNDGPFADFNGVVEEVDYEK Unmodified 2242.0066 0.0066081055 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1 5 5 5 2 2 2 3 3 3 2 2 2 3 5 4 52.246 51.099 2;3 1.0938E-29 20047 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 205.52 203.82 20564000000 33572000 51002000 34085000 12365000 11237000 10394000 8108500 0 0 4536100000 4569700000 4929100000 43513000 45445000 34790000 477440000 318770000 368660000 47658000 56061000 53679000 1643600000 1639400000 1639800000 22092 936 21395 410620;410621;410622;410623;410624;410625;410626;410627;410628;410629;410630;410631;410632;410633;410634;410635;410636;410637;410638;410639;410640;410641;410642;410643;410644;410645;410646;410647;410648;410649;410650;410651;410652;410653;410654;410655;410656;410657;410658;410659;410660;410661;410662;410663;410664;410665;410666;410667;410668;410669;410670;410671;410672;410673;410674;410675;410676;410677;410678;410679 251690;251691;251692;251693;251694;251695;251696;251697;251698;251699;251700;251701;251702;251703;251704;251705;251706;251707;251708;251709;251710;251711;251712;251713;251714;251715;251716;251717;251718;251719;251720;251721;251722;251723;251724;251725;251726;251727;251728;251729;251730;251731;251732;251733;251734;251735;251736;251737;251738;251739;251740;251741;251742;251743;251744;251745;251746;251747;251748;251749;251750;251751;251752;251753;251754 251719 60 VNDIMGEIASASEEQQR Unmodified 1875.8633 0.86325511 152 P07018 tap Methyl-accepting chemotaxis protein IV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 39.736 38.017 2 3.201E-07 13297 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 110.38 108.79 7472900 0 0 0 2371500 2596300 2505100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22093 152 21396 410680;410681;410682 251755;251756;251757 251757 3 VNDIMHTGDEIPHVK Unmodified 1703.8301 0.83010449 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.299 22.579 4 0.15067 9727 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 17.078 15.456 413760000 47213000 44725000 40133000 0 0 358300 29333000 31810000 26053000 0 0 0 28820000 27048000 25869000 0 0 0 35109000 36269000 41021000 0 0 0 22094 1565 21397 410683;410684;410685;410686;410687;410688;410689;410690;410691;410692;410693;410694;410695 251758;251759 251758 2 VNDQEISR Unmodified 959.46722 0.46722311 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.362 11.917 2 0.00054791 3040 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 122.18 47.875 1121100000 8497000 0 0 5424000 0 0 345490000 385250000 0 23173000 18716000 17232000 0 0 0 0 0 0 0 0 317270000 0 0 0 22095 819 21398 410696;410697;410698;410699;410700;410701;410702;410703;410704;410705;410706;410707 251760;251761;251762;251763;251764;251765;251766;251767 251765 8 VNEDEMYPGEAGIDIYNLTK Oxidation (M) 2286.0362 0.036193674 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 5 7 5 4 5 6 46.929 45.751 2;3 1.6277E-23 16451 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 199.03 199.03 1002400000 0 0 0 0 0 0 0 0 0 98347000 68845000 62528000 0 0 0 204640000 142910000 150060000 0 0 0 81490000 94046000 99486000 22096 463 21399 410708;410709;410710;410711;410712;410713;410714;410715;410716;410717;410718;410719;410720;410721;410722;410723;410724;410725;410726;410727;410728;410729;410730;410731;410732;410733;410734;410735;410736;410737;410738;410739;410740;410741;410742;410743;410744;410745;410746;410747;410748;410749;410750;410751;410752 251768;251769;251770;251771;251772;251773;251774;251775;251776;251777;251778;251779;251780;251781;251782;251783;251784;251785;251786;251787;251788;251789;251790;251791;251792;251793;251794;251795;251796;251797;251798;251799;251800;251801;251802;251803;251804;251805;251806;251807;251808;251809;251810;251811;251812;251813;251814;251815;251816;251817;251818;251819 251783 267 52 VNEDEMYPGEAGIDIYNLTK Unmodified 2270.0413 0.041279052 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 3 3 2 2 2 2 2 2 50.092 48.901 2;3 1.1793E-29 23951 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 203.93 202.1 25305000000 213430000 198700000 161640000 11223000 10539000 11899000 125810000 107830000 125430000 1776800000 1720100000 1529100000 160260000 158060000 165930000 3518000000 3729000000 3957900000 202290000 204600000 195220000 2238600000 2444900000 2337300000 22097 463 21399 410753;410754;410755;410756;410757;410758;410759;410760;410761;410762;410763;410764;410765;410766;410767;410768;410769;410770;410771;410772;410773;410774;410775;410776;410777;410778;410779;410780;410781;410782;410783;410784;410785;410786;410787;410788;410789;410790;410791;410792;410793;410794;410795;410796;410797;410798;410799;410800;410801;410802;410803;410804 251820;251821;251822;251823;251824;251825;251826;251827;251828;251829;251830;251831;251832;251833;251834;251835;251836;251837;251838;251839;251840;251841;251842;251843;251844;251845;251846;251847;251848;251849;251850;251851;251852;251853;251854;251855;251856;251857;251858;251859;251860;251861;251862;251863;251864;251865;251866;251867;251868;251869;251870;251871;251872 251861 53 VNEEWKNNVGTGSTVK Unmodified 1760.8693 0.86932676 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 2 15.849 16.434 2;3 9.0154E-19 5299 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 210.91 199.17 690500000 0 0 0 2699100 2423400 1884000 65230000 77147000 74333000 6681900 4966900 4424100 67015000 58444000 67684000 2666500 2708400 2191900 78943000 76360000 72143000 7756100 7372700 7421200 22098 994 21400 410805;410806;410807;410808;410809;410810;410811;410812;410813;410814;410815;410816;410817;410818;410819;410820;410821;410822;410823;410824;410825;410826;410827;410828;410829;410830;410831;410832;410833;410834;410835;410836 251873;251874;251875;251876;251877;251878;251879;251880;251881;251882;251883;251884;251885;251886;251887;251888;251889;251890 251890 18 VNEIETYMDGVHLICTTAK Unmodified 2193.0446 0.044590291 1461 P37188 gatB Galactitol-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 3 3 3 3 3 2 3 3 3 3 1 1 1 3 3 3 1 1 1 43.401 41.755 2;3 1.9021E-37 20905 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 278.33 273.34 16459000000 1537500000 1655400000 1559300000 94477000 119020000 107130000 1970800000 1757800000 1642600000 117950000 95296000 117100000 1111400000 1059900000 866620000 59604000 50088000 60408000 785090000 835620000 792490000 19480000 22085000 21492000 22099 1461 21401 410837;410838;410839;410840;410841;410842;410843;410844;410845;410846;410847;410848;410849;410850;410851;410852;410853;410854;410855;410856;410857;410858;410859;410860;410861;410862;410863;410864;410865;410866;410867;410868;410869;410870;410871;410872;410873;410874;410875;410876;410877;410878;410879;410880;410881;410882;410883;410884;410885;410886;410887;410888;410889;410890;410891 251891;251892;251893;251894;251895;251896;251897;251898;251899;251900;251901;251902;251903;251904;251905;251906;251907;251908;251909;251910;251911;251912;251913;251914;251915;251916;251917;251918;251919;251920;251921;251922;251923;251924;251925;251926;251927;251928;251929;251930;251931;251932;251933;251934 251912 44 VNEIETYMDGVHLICTTAK Oxidation (M) 2209.0395 0.039504913 1461 P37188 gatB Galactitol-specific phosphotransferase enzyme IIB component yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.464 34.852 3 8.3987E-05 16693 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.11 71.84 166210000 12397000 9530700 14323000 3266300 2921500 3722800 20887000 22359000 21131000 4165300 3712300 3254600 6725200 10893000 7544900 1659600 0 1170300 4293900 7106200 0 2752400 2393700 0 22100 1461 21401 410892;410893;410894;410895;410896;410897;410898;410899;410900;410901;410902;410903;410904;410905;410906;410907;410908;410909;410910;410911;410912 251935;251936;251937;251938;251939;251940;251941;251942 251942 557 8 VNENLDINPTHYLDINHADIVAR Unmodified 2645.3198 0.31977759 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 43.445 41.869 3;4 1.1096E-22 20418 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 177.87 171.22 1766300000 104490000 95382000 80589000 0 1333600 0 74154000 92278000 83869000 12653000 8022900 8895300 93561000 88414000 90631000 1965200 2558400 3516000 116200000 115650000 99557000 185590000 217780000 189210000 22101 1433 21402 410913;410914;410915;410916;410917;410918;410919;410920;410921;410922;410923;410924;410925;410926;410927;410928;410929;410930;410931;410932;410933;410934;410935;410936;410937;410938;410939;410940;410941;410942;410943;410944;410945;410946;410947;410948;410949;410950 251943;251944;251945;251946;251947;251948;251949;251950;251951;251952;251953;251954;251955;251956;251957;251958;251959;251960;251961;251962;251963;251964 251956 22 VNESLLAGKPIK Unmodified 1267.75 0.7499869 111 P05459 pdxB Erythronate-4-phosphate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 19.462 19.943 2;3 0.00016591 8016 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 116.52 82.131 1214100000 98551000 112710000 105500000 571800 648670 0 116320000 109300000 119100000 0 0 0 75973000 77581000 75401000 0 0 0 97561000 104900000 120030000 0 0 0 22102 111 21403 410951;410952;410953;410954;410955;410956;410957;410958;410959;410960;410961;410962;410963;410964;410965;410966;410967;410968;410969;410970;410971;410972;410973;410974;410975;410976 251965;251966;251967;251968;251969;251970;251971;251972;251973;251974;251975;251976;251977;251978;251979;251980;251981;251982;251983;251984;251985;251986 251966 20 VNEVNFDKPENAR Unmodified 1530.7427 0.74266969 982 P0AG30 rho Transcription termination factor Rho yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 15.224 15.823 2;3 1.4982E-23 5365 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 265 258.15 1548200000 157550000 223680000 182860000 18153000 18344000 18791000 93011000 90175000 91455000 105210000 89441000 81876000 55618000 46389000 51259000 4040400 3562500 3651300 64482000 63331000 59459000 9478600 9650100 6762400 22103 982 21404 410977;410978;410979;410980;410981;410982;410983;410984;410985;410986;410987;410988;410989;410990;410991;410992;410993;410994;410995;410996;410997;410998;410999;411000;411001;411002;411003;411004;411005;411006;411007;411008;411009;411010;411011;411012;411013;411014;411015;411016;411017;411018;411019;411020 251987;251988;251989;251990;251991;251992;251993;251994;251995;251996;251997;251998;251999;252000;252001;252002;252003;252004;252005;252006;252007;252008;252009;252010;252011;252012;252013;252014;252015;252016;252017;252018;252019;252020;252021 252011 35 VNFDSQLEK Unmodified 1078.5295 0.52948901 1396 P32680 yjaG Uncharacterized protein YjaG yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.765 21.812 2 0.0058878 9001 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 72.879 55.494 594240000 57178000 48223000 43365000 0 0 0 52289000 47231000 49063000 0 0 0 48198000 45500000 33058000 0 0 0 57663000 56443000 56025000 0 0 0 22104 1396 21405 411021;411022;411023;411024;411025;411026;411027;411028;411029;411030;411031;411032 252022;252023;252024;252025;252026 252024 4 VNFEPDSAFR Unmodified 1180.5513 0.55128709 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS 1 31.482 30.33 2 0.0013686 14287 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.37 64.941 16123000 16123000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22105 1181 21406 411033 252027 252027 0 VNGGLLVQDR Unmodified 1069.588 0.58800695 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 21.23 21.647 2 0.00069695 8512 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.08 71.694 175350000 48280000 57525000 53047000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5014400 7119800 4363400 0 0 0 22106 1111 21407 411034;411035;411036;411037;411038;411039 252028;252029;252030 252030 3 VNGIAPGAILTDALK Unmodified 1451.8348 0.83477916 886 P0AET8 hdhA 7-alpha-hydroxysteroid dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.056 45.528 2 9.7348E-06 21972 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.011 80.395 647700000 126880000 114530000 118870000 0 0 0 69135000 70000000 60462000 973700 838530 560250 9773800 11659000 9411100 0 0 0 17822000 19882000 16897000 0 0 0 22107 886 21408 411040;411041;411042;411043;411044;411045;411046;411047;411048;411049;411050;411051;411052;411053;411054 252031;252032;252033;252034;252035;252036 252036 6 VNGYICQGFNPVASFPNK Unmodified 2010.9622 0.96218129 1393 P32176 fdoG Formate dehydrogenase-O major subunit yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 19.884 20.359 3;4 0.16227 8105 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 6.2738 2.4329 1192500000 76401000 53843000 29293000 0 0 0 113590000 103890000 109280000 0 0 0 87734000 76738000 93682000 0 0 0 164300000 91225000 192510000 0 0 0 22108 1393 21409 411055;411056;411057;411058;411059;411060;411061;411062;411063;411064;411065;411066;411067;411068;411069;411070;411071;411072;411073;411074;411075;411076;411077 252037;252038;252039;252040;252041;252042 252038 6 VNHAPANAQEHEAAR Unmodified 1613.7659 0.76586474 1882 P77173 zipA Cell division protein ZipA yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 8.908 9.7395 3 2.2999E-06 2494 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 103.79 101.03 71075000 2219100 764590 2252500 0 0 0 0 0 0 0 0 0 0 0 609090 0 0 0 24733000 19383000 21113000 0 0 0 22109 1882 21410 411078;411079;411080;411081;411082;411083;411084 252043;252044 252043 2 VNHAPANAQEHEAARPSPQHQYQPPYASAQPR Unmodified 3546.689 0.68895841 1882 P77173 zipA Cell division protein ZipA yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 2 13.213 13.849 4;5 0.0019115 3637 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 46.464 37.083 202730000 5901900 0 10950000 8732200 4299500 5171600 0 18533000 15801000 20992000 15641000 17846000 11159000 7342400 7238500 0 0 0 14847000 13945000 10550000 3452200 2479400 7853900 22110 1882 21411 411085;411086;411087;411088;411089;411090;411091;411092;411093;411094;411095;411096;411097;411098;411099;411100;411101;411102;411103;411104;411105;411106;411107;411108;411109;411110;411111 252045;252046;252047;252048;252049;252050;252051;252052;252053;252054;252055 252045 11 VNHGLELAR Unmodified 1007.5512 0.55122751 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 13.172 14.055 2 0.0076292 4299 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 66.692 56.278 229370000 45790000 42060000 43439000 0 0 0 14957000 0 0 0 0 0 13885000 11086000 7179800 0 0 0 15654000 17382000 17934000 0 0 0 22111 44 21412 411112;411113;411114;411115;411116;411117;411118;411119;411120;411121 252056;252057;252058;252059 252056 4 VNHLVEALTHLR Unmodified 1400.7888 0.78883202 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 30.027 28.551 3;4 5.3788E-05 13587 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 89.44 83.208 617700000 60842000 67641000 35670000 951200 0 0 57891000 66008000 55178000 989130 1351700 0 20274000 45019000 41960000 0 0 0 55311000 48632000 59983000 0 0 0 22112 1256 21413 411122;411123;411124;411125;411126;411127;411128;411129;411130;411131;411132;411133;411134;411135;411136;411137;411138;411139;411140;411141;411142;411143;411144;411145;411146 252060;252061;252062;252063;252064;252065;252066;252067;252068;252069;252070;252071;252072;252073;252074;252075;252076;252077;252078 252065 19 VNHRAER Unmodified 880.46275 0.46274685 726 P0ACF0 hupA DNA-binding protein HU-alpha yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 8.6711 8.8715 2 0.0045686 1463 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 111.29 98.734 76539000 0 0 0 0 0 0 0 0 0 5794400 6381100 5601000 0 0 0 11929000 9666900 27751000 0 0 0 3114100 3221500 3079800 22113 726 21414 411147;411148;411149;411150;411151;411152;411153;411154;411155 252079;252080;252081;252082;252083;252084 252081 6 VNIAIVGGGATGVELSAELHNAVK Unmodified 2318.2594 0.25940917 27 P00393 ndh NADH dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.728 42.977 3 3.7116E-22 17550 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 137.45 133.35 321290000 4044400 0 0 3634000 4121700 4555900 29852000 29908000 24397000 35904000 32839000 34741000 13896000 11632000 9781500 0 0 0 21565000 19367000 14266000 6724000 11635000 8430500 22114 27 21415 411156;411157;411158;411159;411160;411161;411162;411163;411164;411165;411166;411167;411168;411169;411170;411171;411172;411173;411174 252085;252086;252087;252088;252089;252090;252091;252092 252085 8 VNIEIDPQTQAVVDTVER Unmodified 2025.0378 0.037848654 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 43.655 42.203 2;3 2.7172E-45 19640 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 263.83 251.06 985440000 108060000 97287000 88171000 0 0 0 66121000 67767000 71155000 0 0 0 77224000 65936000 67836000 0 0 0 90656000 97060000 88160000 0 0 0 22115 963 21416 411175;411176;411177;411178;411179;411180;411181;411182;411183;411184;411185;411186;411187;411188;411189;411190;411191;411192;411193;411194;411195;411196;411197 252093;252094;252095;252096;252097;252098;252099;252100;252101;252102;252103;252104;252105;252106;252107;252108;252109;252110;252111 252110 19 VNIFGGK Unmodified 733.41227 0.41227441 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.903 22.243 2 0.040498 10004 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.776 52.619 358930000 32078000 30155000 26659000 0 0 0 50611000 39679000 43812000 1900700 0 2023800 25633000 21688000 19943000 0 0 0 21827000 18390000 24528000 0 0 0 22116 709 21417 411198;411199;411200;411201;411202;411203;411204;411205;411206;411207;411208;411209;411210;411211 252112;252113;252114;252115 252112 4 VNIGAAELK Unmodified 913.52328 0.52328142 1030 P0AGM7 uraA Uracil permease yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 21.793 21.772 2 0.02131 8803 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 62.582 32.397 19312000 0 7685000 6312000 423610 0 0 0 0 3065100 0 0 0 0 0 0 0 0 0 0 0 1826200 0 0 0 22117 1030 21418 411212;411213;411214;411215;411216 252116;252117 252117 2 VNIINTPIK Unmodified 1010.6124 0.61243078 1795 P75954 ycfS Probable L,D-transpeptidase YcfS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 27.583 26.55 2 0.10926 12136 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 47.198 31.536 39612000 0 0 0 0 0 0 0 0 0 0 0 0 2945800 3078700 4206600 0 0 0 11149000 10078000 8153500 0 0 0 22118 1795 21419 411217;411218;411219;411220;411221;411222 252118;252119 252119 0 VNILQPGPGVGGHCIAVDPWFIVAQNPQQAR Unmodified 3337.7142 0.71423387 1307 P27829 wecC UDP-N-acetyl-D-mannosamine dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.417 51.169 3 1.1662E-12 25244 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 118.75 114.08 386360000 13384000 19337000 16207000 0 0 0 23134000 30658000 24275000 0 0 0 44041000 29205000 34444000 0 0 0 46886000 49848000 54946000 0 0 0 22119 1307 21420 411223;411224;411225;411226;411227;411228;411229;411230;411231;411232;411233;411234 252120;252121;252122;252123;252124;252125;252126;252127 252121 8 VNINGGAPQR Unmodified 1024.5414 0.5413911 398 P0A855 tolB Protein TolB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 12.424 13.235 2 0.12392 3620 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 41.631 26.133 67123000 13460000 13747000 14602000 0 0 0 0 0 0 0 0 0 0 9420100 0 0 0 0 0 15894000 0 0 0 0 22120 398 21421 411235;411236;411237;411238;411239 252128 252128 0 VNIVAPGPIWTALQISGGQTQDK Unmodified 2392.2751 0.27505923 995 P0AG84 yghA Uncharacterized oxidoreductase YghA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 1 54.508 53.021 2;3 5.6145E-10 26312 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 115.99 113.23 391820000 103310000 112780000 86802000 0 0 0 28614000 27187000 24254000 0 0 0 0 0 2680300 0 0 0 0 3432100 2766700 0 0 0 22121 995 21422 411240;411241;411242;411243;411244;411245;411246;411247;411248;411249;411250;411251;411252;411253;411254 252129;252130;252131 252129 3 VNKLELNYDNFMEEFTAILHR Unmodified 2595.2792 0.27915833 683 P0ABU9 tolQ Protein TolQ yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.525 53.086 4 0.12303 21428 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 24.901 22.139 87721000 0 0 0 2966500 0 3669000 5091200 3797100 0 9453400 6003300 3858200 3225100 0 5897900 0 0 0 6019000 9365000 7321800 5933700 8998000 6121900 22122 683 21423 411255;411256;411257;411258;411259;411260;411261;411262;411263;411264;411265;411266;411267;411268;411269 252132 252132 1 VNLIGEHTDYNDGFVLPCAIDYQTVISCAPR Unmodified 3536.6704 0.67043931 278 P0A6T3 galK Galactokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.298 51.85 3 2.7863E-18 25704 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 153.41 152.71 273060000 44284000 39766000 28046000 0 0 0 29757000 27040000 27727000 0 0 0 0 13945000 11316000 0 0 0 14395000 20260000 16519000 0 0 0 22123 278 21424 411270;411271;411272;411273;411274;411275;411276;411277;411278;411279;411280 252133;252134;252135;252136;252137;252138;252139 252134 7 VNLPASTSTPQPRPEKPVYLSVK Unmodified 2507.3748 0.37477328 684 P0ABV2 exbD Biopolymer transport protein ExbD yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.885 25.527 4 0.10112 9326 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 29.118 28.04 99785000 9821200 9806900 0 0 0 0 6514900 6993100 7358100 4360000 0 4190500 0 8449100 0 0 0 0 0 29520000 0 4748900 3759700 4263100 22124 684 21425 411281;411282;411283;411284;411285;411286;411287;411288;411289;411290;411291;411292 252140 252140 1 VNLVEQLESLSVTK Unmodified 1557.8614 0.86138784 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.722 51.508 2 5.3165E-11 25476 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 169.23 165.21 432540000 10729000 12715000 11540000 5667900 6831100 9178300 32976000 32729000 29829000 21746000 25360000 17629000 26741000 24023000 25522000 0 5063000 6395900 35211000 28806000 34147000 10835000 9320500 9544600 22125 439 21426 411293;411294;411295;411296;411297;411298;411299;411300;411301;411302;411303;411304;411305;411306;411307;411308;411309;411310;411311;411312;411313;411314;411315 252141;252142;252143;252144;252145;252146;252147;252148;252149;252150;252151;252152;252153;252154;252155;252156;252157;252158;252159 252146 18 VNLVIVSHSSR Unmodified 1209.683 0.68296996 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 1 1 1 1 2 2 2 2 2 2 1 2 2 2 1 1 1 19.02 19.405 2;3 2.0805E-10 6972 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 192.26 184.43 358260000 13557000 8358800 13384000 1165800 2382900 1101000 24010000 17970000 21283000 9882600 9841800 10316000 38299000 39349000 37033000 0 1935300 0 35911000 36691000 28259000 3369700 1795500 2363600 22126 1468 21427 411316;411317;411318;411319;411320;411321;411322;411323;411324;411325;411326;411327;411328;411329;411330;411331;411332;411333;411334;411335;411336;411337;411338;411339;411340;411341;411342;411343;411344;411345;411346;411347;411348;411349;411350 252160;252161;252162;252163;252164;252165;252166;252167;252168;252169;252170;252171;252172 252170 13 VNMGEPNFEPSAVPFR Unmodified 1789.8458 0.84575455 254 P0A6K1 dapF Diaminopimelate epimerase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 42.505 40.806 2 3.4532E-08 20231 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 117.79 111.82 124080000 14657000 14888000 11882000 0 0 0 9144200 9638300 9990400 0 0 0 7167400 9465100 9154800 0 0 0 9310600 9206000 9577000 0 0 0 22127 254 21428 411351;411352;411353;411354;411355;411356;411357;411358;411359;411360;411361;411362 252173;252174 252174 2 VNNEGTHFELDGGIELPLNGGYR Unmodified 2500.1983 0.19826548 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 44.74 43.319 3 4.6331E-07 17084 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 107.25 106.17 83965000 0 0 0 0 1037800 1356900 6912100 2973200 0 0 0 11584000 7319700 0 0 6429000 0 6119900 0 0 0 24359000 0 15873000 22128 1064 21429 411363;411364;411365;411366;411367;411368;411369;411370;411371;411372 252175;252176;252177;252178;252179 252179 5 VNNLSEQYK Unmodified 1093.5404 0.54038805 977 P0AG14 sohB Probable protease SohB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.336 14.041 2 4.7978E-09 4017 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 202.17 189.18 198050000 6598000 8048500 9749400 1760700 2550900 2382200 19537000 15826000 13112000 6054600 6035600 5482800 16676000 17258000 17998000 0 0 0 12805000 13621000 15519000 2016600 2661400 2361000 22129 977 21430 411373;411374;411375;411376;411377;411378;411379;411380;411381;411382;411383;411384;411385;411386;411387;411388;411389;411390;411391;411392;411393 252180;252181;252182;252183;252184;252185;252186;252187;252188;252189;252190;252191 252190 12 VNNPEVMDK Oxidation (M) 1060.4859 0.48590964 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.117 11.947 2 0.00042403 3038 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 114.99 105.47 140340000 13282000 13551000 11850000 0 0 0 18774000 20254000 14206000 0 0 0 9820400 10891000 7178200 0 0 0 11286000 9244600 0 0 0 0 22130 1132 21431 411394;411395;411396;411397;411398;411399;411400;411401;411402;411403;411404 252192;252193;252194;252195;252196;252197;252198 252192 495 7 VNNPEVMDK Unmodified 1044.491 0.49099502 1132 P16700 cysP Thiosulfate-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 12.876 13.767 2 0.00063782 4175 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 105.1 94.285 1122800000 0 0 0 0 0 0 196550000 193740000 186040000 0 0 0 126250000 145440000 115200000 0 0 0 159620000 0 0 0 0 0 22131 1132 21431 411405;411406;411407;411408;411409;411410;411411 252199;252200;252201;252202;252203;252204 252202 4 VNNVDPAK Unmodified 855.44503 0.4450311 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.883 11.495 2 0.0003557 2325 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 143.85 124.29 2057500000 101010000 100810000 103930000 1550900 0 0 217580000 208690000 205560000 18729000 14955000 17421000 216480000 177780000 175210000 0 1356000 1901100 160550000 170800000 163180000 0 0 0 22132 539 21432 411412;411413;411414;411415;411416;411417;411418;411419;411420;411421;411422;411423;411424;411425;411426;411427;411428;411429 252205;252206;252207;252208;252209;252210;252211;252212;252213;252214;252215;252216;252217;252218;252219 252207 15 VNPADDIEVINTELALADLDTCER Unmodified 2685.2803 0.28034012 680 P0ABU2 ychF Ribosome-binding ATPase YchF yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 2 1 54.913 53.446 2 5.4202E-84 25384 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 310.57 299.05 399900000 32554000 29205000 35022000 0 0 0 20496000 24882000 22552000 0 0 0 32661000 34021000 42529000 0 0 0 37542000 45797000 42636000 0 0 0 22133 680 21433 411430;411431;411432;411433;411434;411435;411436;411437;411438;411439;411440;411441;411442 252220;252221;252222 252222 3 VNPELVEVLSVDALAIHEEHLR Unmodified 2481.3227 0.32273771 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 1 2 1 1 2 2 2 50.405 49.019 3;4 1.3044E-11 23812 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.29 129.7 1688900000 273520000 257370000 217210000 1878400 0 0 135960000 150400000 123670000 0 0 0 82834000 58793000 69365000 0 0 0 105570000 116060000 96242000 0 0 0 22134 218 21434 411443;411444;411445;411446;411447;411448;411449;411450;411451;411452;411453;411454;411455;411456;411457;411458;411459;411460;411461;411462;411463 252223;252224;252225;252226;252227;252228;252229;252230;252231;252232;252233;252234;252235;252236;252237;252238 252235 15 VNPENSIHLTMAGNEVFK Unmodified 1998.9833 0.98331066 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 35.634 34.184 2;3 1.5018E-22 15857 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 231.03 224.8 1556500000 164500000 141130000 114200000 0 0 0 109730000 0 0 0 0 0 167640000 141720000 161990000 0 0 0 193300000 185640000 176600000 0 0 0 22135 273 21435 411464;411465;411466;411467;411468;411469;411470;411471;411472;411473;411474;411475;411476;411477;411478;411479;411480;411481;411482 252239;252240;252241;252242;252243;252244;252245;252246;252247;252248;252249;252250;252251;252252;252253;252254 252251 16 VNPETTLFLVASK Unmodified 1417.7817 0.78168095 277 P0A6T1 pgi Glucose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 44.511 42.92 2;3 6.395E-06 21286 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 89.26 86.697 3177300000 247460000 272380000 11734000 0 878590 0 486700000 481970000 456230000 1999100 0 1792100 201030000 174760000 162780000 0 0 0 237030000 234960000 205550000 0 0 0 22136 277 21436 411483;411484;411485;411486;411487;411488;411489;411490;411491;411492;411493;411494;411495;411496;411497;411498;411499;411500;411501;411502;411503;411504;411505;411506;411507;411508 252255;252256;252257;252258;252259;252260;252261;252262;252263;252264;252265;252266;252267;252268;252269;252270;252271;252272;252273;252274;252275;252276 252258 22 VNPGGSVSDTVISAGGGQSLQGR Unmodified 2142.0665 0.066523021 1513 P39180 flu Antigen 43;Antigen 43 alpha chain;Antigen 43 beta chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 30.163 28.873 2;3 1.27E-28 12949 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 254.89 241.21 542860000 26505000 21579000 25351000 0 0 0 5381000 5648700 3579200 0 0 0 108690000 120050000 111660000 0 0 0 37742000 39764000 36901000 0 0 0 22137 1513 21437 411509;411510;411511;411512;411513;411514;411515;411516;411517;411518;411519;411520;411521;411522;411523;411524;411525;411526;411527;411528;411529 252277;252278;252279;252280;252281;252282;252283;252284;252285;252286;252287;252288;252289;252290;252291 252289 15 VNPGSIILSAEMMLR Unmodified 1629.8582 0.85823349 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 55.109 53.688 2;3 2.1294E-12 26583 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 141.85 129.88 17972000000 3343100000 3290300000 2786500000 8589900 7773600 6757600 176540000 165250000 173750000 0 0 0 1213500000 1057800000 1119200000 0 0 0 1495200000 1564900000 1559700000 0 1233700 2240200 22138 179 21438 411530;411531;411532;411533;411534;411535;411536;411537;411538;411539;411540;411541;411542;411543;411544;411545;411546;411547;411548;411549;411550;411551;411552;411553;411554;411555;411556;411557;411558 252292;252293;252294;252295;252296;252297;252298;252299;252300;252301;252302;252303;252304;252305;252306;252307 252294 16 VNPGYPGPK Unmodified 927.48142 0.48141661 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.148 14.631 2 0.044686 4321 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 55.676 51.823 170690000 0 0 0 0 0 0 24729000 26424000 24102000 9566800 9154000 8950400 14018000 11944000 11228000 2313900 1351100 1544700 8026200 7023100 5404600 1626800 1716100 1570300 22139 500 21439 411559;411560;411561;411562;411563;411564;411565;411566;411567;411568;411569;411570;411571;411572;411573;411574;411575;411576 252308 252308 1 VNPIDFENSEGNLGLSNAVLQHLASK Unmodified 2765.3984 0.39842185 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.842 49.516 3 1.1643E-16 24048 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 156.43 153.75 3219200000 422950000 410120000 382250000 1917000 1939700 0 114050000 123140000 112120000 0 1064000 0 265480000 245980000 235870000 0 0 0 312350000 274640000 315300000 0 0 0 22140 638 21440 411577;411578;411579;411580;411581;411582;411583;411584;411585;411586;411587;411588;411589;411590;411591 252309;252310;252311;252312;252313;252314;252315;252316;252317;252318;252319;252320 252313 12 VNPLSPVDLVIDHSVTVDR Unmodified 2074.1059 0.10586864 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 1 1 1 1 1 1 2 2 49.222 47.825 2;3 1.1685E-36 23153 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 231.36 228.23 3511900000 864040000 804510000 880180000 0 0 0 204010000 195530000 191980000 0 1194900 1842800 36420000 30389000 31549000 0 0 0 93289000 94235000 82733000 0 0 0 22141 1254 21441 411592;411593;411594;411595;411596;411597;411598;411599;411600;411601;411602;411603;411604;411605;411606;411607;411608;411609;411610;411611;411612;411613 252321;252322;252323;252324;252325;252326;252327;252328;252329;252330;252331 252331 11 VNPLSPVDLVIDHSVTVDRFGDDEAFEENVR Unmodified 3482.6954 0.69539173 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 52.023 50.744 4 0.0014982 24981 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 49.942 45.036 44265000 13028000 13346000 15524000 0 0 0 0 0 0 0 0 2366900 0 0 0 0 0 0 0 0 0 0 0 0 22142 1254 21442 411614;411615;411616;411617 252332 252332 1 VNPVVPEVVNQVCFK Unmodified 1726.9076 0.90762652 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 2 1 1 42.913 41.222 2;3 1.5913E-08 19227 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 177.57 176.58 4973600000 330600000 305480000 276250000 1411700 2329800 2188900 606070000 569670000 510940000 1007900 0 0 465600000 437070000 467770000 0 0 0 325250000 342330000 325020000 1905700 0 2704400 22143 697 21443 411618;411619;411620;411621;411622;411623;411624;411625;411626;411627;411628;411629;411630;411631;411632;411633;411634;411635;411636;411637;411638;411639;411640;411641;411642;411643;411644;411645;411646;411647;411648;411649 252333;252334;252335;252336;252337;252338;252339;252340;252341;252342;252343;252344;252345;252346;252347;252348;252349;252350;252351;252352 252350 20 VNPYSAGMGLMPGHVYR Unmodified 1847.8811 0.8810942 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 2 1 1 2 34.532 32.929 2;3 7.5962E-14 15587 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 212.9 179.9 1296700000 295270000 297000000 279650000 0 0 0 77296000 75422000 79193000 3853900 3794800 3639400 19521000 19725000 17610000 0 0 0 34227000 41599000 48905000 0 0 0 22144 1194 21444 411650;411651;411652;411653;411654;411655;411656;411657;411658;411659;411660;411661;411662;411663;411664;411665;411666;411667;411668;411669;411670;411671;411672 252353;252354;252355;252356;252357;252358;252359;252360;252361;252362;252363;252364;252365;252366;252367 252362 15 VNQELEKDLK Unmodified 1214.6507 0.65066678 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 22.862 22.839 2 0.018249 6894 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 64.42 41.516 6383700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2723800 3659900 0 0 0 0 0 0 0 22145 1854 21445 411673;411674;411675 252368;252369;252370 252369 3 VNQLGVAEPVVQR Unmodified 1407.7834 0.78341229 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.643 25.536 2 1.7686E-17 11695 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 212.63 208.02 379500000 19516000 17224000 12926000 2656900 2317700 2375100 30619000 27901000 28762000 9527600 6491900 8444100 25259000 22204000 17977000 1331900 837110 1059400 45596000 40478000 39766000 5241900 4936000 6050900 22146 997 21446 411676;411677;411678;411679;411680;411681;411682;411683;411684;411685;411686;411687;411688;411689;411690;411691;411692;411693;411694;411695;411696;411697;411698;411699 252371;252372;252373;252374;252375;252376;252377;252378;252379;252380;252381 252374 11 VNQSDISDAQIK Unmodified 1316.6572 0.65720872 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 17.801 18.303 2 0.00010492 5577 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 112.36 108.06 275820000 19076000 14539000 13237000 3549500 3624800 3247900 30842000 31834000 25229000 12328000 11154000 9971300 5784900 5755200 5554900 0 0 0 23908000 20219000 18188000 6696600 4764200 6317700 22147 1691 21447 411700;411701;411702;411703;411704;411705;411706;411707;411708;411709;411710;411711;411712;411713;411714;411715;411716;411717;411718;411719;411720;411721;411722;411723 252382;252383;252384;252385;252386;252387 252382 6 VNQSDISDAQIKK Unmodified 1444.7522 0.75217174 1691 P64588 yqjI Transcriptional regulator YqjI yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 1 1 2 2 2 13.532 13.911 2;3 1.0981E-06 3402 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 137.98 133.82 193500000 0 0 0 11987000 14059000 15591000 0 0 0 32209000 23687000 23883000 0 0 0 8151800 4785300 7124000 0 0 0 14032000 21451000 16538000 22148 1691 21448 411724;411725;411726;411727;411728;411729;411730;411731;411732;411733;411734;411735;411736;411737;411738;411739;411740;411741;411742;411743;411744 252388;252389;252390;252391;252392;252393;252394;252395;252396;252397;252398;252399;252400;252401;252402;252403;252404;252405;252406;252407 252400 20 VNQVAEVLQLAHLLDR Unmodified 1817.0159 0.015931421 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.031 52.79 3 1.0857E-10 26119 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 150.39 140.05 2066700000 14470000 15088000 13003000 0 14052000 18172000 94537000 83796000 97467000 123900000 150660000 147820000 110570000 111460000 105700000 25772000 55834000 61255000 187620000 171850000 190500000 87204000 100930000 85044000 22149 1718 21449 411745;411746;411747;411748;411749;411750;411751;411752;411753;411754;411755;411756;411757;411758;411759;411760;411761;411762;411763;411764;411765;411766;411767;411768 252408;252409;252410;252411;252412;252413;252414;252415;252416;252417;252418;252419;252420;252421;252422;252423;252424;252425;252426;252427;252428 252415 21 VNRDNISLDLGNNAEAVILR Unmodified 2195.1658 0.16584314 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 41.676 40.161 2;3 1.2819E-68 14883 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 314.85 285.51 1020600000 0 0 0 0 0 0 0 0 0 45742000 51910000 43821000 0 0 0 229700000 136070000 219210000 0 0 0 101290000 95599000 97260000 22150 935 21450 411769;411770;411771;411772;411773;411774;411775;411776;411777;411778;411779;411780;411781;411782;411783;411784;411785;411786 252429;252430;252431;252432;252433;252434;252435;252436;252437;252438;252439;252440;252441;252442;252443 252430 15 VNRDNISLDLGNNAEAVILREDMLPR Unmodified 2936.5138 0.51380273 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 2 2 2 46.91 45.806 3;4 8.7881E-51 17232 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 240.75 211.01 1099700000 0 0 0 0 0 0 0 0 0 33543000 28240000 29319000 0 0 0 225470000 198450000 269560000 0 0 0 108870000 110470000 95776000 22151 935 21451 411787;411788;411789;411790;411791;411792;411793;411794;411795;411796;411797;411798;411799;411800;411801;411802 252444;252445;252446;252447;252448;252449;252450;252451;252452;252453;252454;252455;252456;252457;252458;252459 252445 16 VNSDVLTVSTVNSQDQVTQKPLR Unmodified 2527.3242 0.32419427 274 P0A6R3 fis DNA-binding protein Fis yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 2 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 3 3 29.147 27.856 2;3;4 1.8233E-63 12847 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 341.78 330.51 8938700000 273370000 220380000 255600000 5690600 6387800 7515600 409580000 425340000 389680000 123110000 133410000 121870000 714110000 714940000 641170000 536820000 399490000 396720000 861140000 851600000 905920000 186650000 171400000 186850000 22152 274 21452 411803;411804;411805;411806;411807;411808;411809;411810;411811;411812;411813;411814;411815;411816;411817;411818;411819;411820;411821;411822;411823;411824;411825;411826;411827;411828;411829;411830;411831;411832;411833;411834;411835;411836;411837;411838;411839;411840;411841;411842;411843;411844;411845;411846;411847;411848;411849;411850;411851;411852;411853;411854;411855;411856;411857;411858;411859;411860;411861;411862;411863;411864;411865;411866;411867;411868;411869;411870 252460;252461;252462;252463;252464;252465;252466;252467;252468;252469;252470;252471;252472;252473;252474;252475;252476;252477;252478;252479;252480;252481;252482;252483;252484;252485;252486;252487;252488;252489;252490;252491;252492;252493;252494;252495;252496;252497;252498;252499;252500;252501;252502;252503;252504;252505;252506;252507;252508;252509;252510;252511;252512;252513;252514;252515 252500 56 VNSDVLTVSTVNSQDQVTQKPLRDSVK Unmodified 2956.5465 0.54654265 274 P0A6R3 fis DNA-binding protein Fis yes yes 0 0 2 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 1 2 2 2 27.231 25.992 3;4 1.1023E-22 8615 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 170.82 170.13 343110000 0 0 0 2423300 1683200 2725600 0 0 0 12681000 18957000 16465000 0 0 0 73252000 74201000 55792000 0 0 0 25370000 28316000 31239000 22153 274 21453 411871;411872;411873;411874;411875;411876;411877;411878;411879;411880;411881;411882;411883;411884;411885;411886;411887;411888;411889;411890 252516;252517;252518;252519;252520;252521;252522;252523;252524;252525;252526;252527;252528 252516 13 VNSGMNR Unmodified 776.35992 0.35992126 1326 P29012 dadX Alanine racemase, catabolic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 6.5278 7.3863 2 0.0012151 1792 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.95 126.54 78043000 21095000 17738000 21067000 0 0 0 0 0 0 0 0 0 2425300 1692700 2361300 0 0 0 3806700 3613400 4242500 0 0 0 22154 1326 21454 411891;411892;411893;411894;411895;411896;411897;411898;411899 252529;252530;252531;252532;252533;252534 252532 6 VNSGVKPLDFCK Unmodified 1362.6966 0.69657112 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 1 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 1 1 20.586 21.035 2;3 4.868E-05 8163 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.42 115.24 182180000 8116800 7494600 6341400 0 0 0 8922200 9110600 10247000 0 0 0 36597000 29307000 20491000 0 0 0 0 34360000 11198000 0 0 0 22155 1575 21455 411900;411901;411902;411903;411904;411905;411906;411907;411908;411909;411910;411911;411912 252535;252536;252537;252538;252539;252540;252541;252542;252543;252544 252540 9 VNSIAEMR Unmodified 918.4593 0.45930096 1507 P39099 degQ Periplasmic pH-dependent serine endoprotease DegQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 1 1 1 15.998 16.887 2 0.00030917 5912 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146.54 125.99 196500000 29318000 27486000 34660000 0 0 0 0 0 0 0 0 0 23373000 16512000 15990000 0 0 0 17795000 17743000 13623000 0 0 0 22156 1507 21456 411913;411914;411915;411916;411917;411918;411919;411920;411921;411922 252545;252546;252547;252548;252549;252550;252551;252552 252548 3 VNSLAQQEQLGFVAR Unmodified 1658.874 0.87401821 1102 P15042 ligA DNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.37 32.223 2 1.0692E-35 15345 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 311.33 291.12 265970000 21071000 19243000 16952000 0 0 0 22299000 18255000 20485000 0 0 0 19937000 18668000 19916000 6271500 3816200 3792900 23503000 27332000 24433000 0 0 0 22157 1102 21457 411923;411924;411925;411926;411927;411928;411929;411930;411931;411932;411933;411934;411935;411936;411937 252553;252554;252555;252556;252557;252558;252559;252560;252561;252562;252563;252564;252565;252566;252567 252559 15 VNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGR Unmodified 3527.678 0.67796752 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 2 1 1 1 1 1 47.381 45.971 3 7.067E-19 22325 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.5 151.5 449140000 76733000 66933000 64291000 0 0 0 20398000 21508000 19148000 0 0 0 21011000 22251000 22018000 0 0 0 40240000 33201000 38602000 0 1111800 1692600 22158 1302 21458 411938;411939;411940;411941;411942;411943;411944;411945;411946;411947;411948;411949;411950;411951;411952 252568;252569;252570;252571;252572;252573;252574;252575;252576;252577 252574 10 VNSPGGSVTASEVIR Unmodified 1471.7631 0.76307078 188 P08395 sppA Protease 4 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.797 22.967 2 5.6861E-07 8157 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 126.1 121.49 90574000 3982400 4509900 2265600 1248000 1413500 1172300 8103400 7328800 8015300 4851900 3149700 4925700 4006100 4567200 5592500 0 509330 0 7135300 7352400 8701000 0 0 1743400 22159 188 21459 411953;411954;411955;411956;411957;411958;411959;411960;411961;411962;411963;411964;411965;411966;411967;411968;411969;411970;411971;411972 252578;252579;252580;252581;252582;252583;252584;252585 252579 8 VNTFLANR Unmodified 933.50321 0.50321468 588 P0AAC8 iscA Iron-binding protein IscA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.005 20.207 2 8.8899E-05 5812 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 163.34 125.1 922330000 0 0 165600000 9375200 11037000 9171900 0 0 0 13056000 11299000 11582000 114850000 110480000 97795000 5826800 3735700 5262400 158360000 0 161160000 13244000 10861000 9629100 22160 588 21460 411973;411974;411975;411976;411977;411978;411979;411980;411981;411982;411983;411984;411985;411986;411987;411988;411989;411990 252586;252587;252588;252589;252590;252591;252592;252593;252594;252595;252596 252594 11 VNTIEERPGGAANVAMNIASLGANAR Unmodified 2595.3187 0.31873174 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.992 37.419 3 3.776E-22 14919 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 159.51 155.84 555880000 44355000 31503000 43012000 3474300 4394800 4328500 30675000 40097000 34175000 13427000 16042000 14458000 40269000 34056000 31254000 1651700 1108400 1054800 56757000 49253000 56440000 0 4090400 0 22161 1880 21461 411991;411992;411993;411994;411995;411996;411997;411998;411999;412000;412001;412002;412003;412004;412005;412006;412007;412008;412009;412010;412011;412012 252597;252598;252599;252600;252601;252602;252603 252598 7 VNVAEYPSLR Unmodified 1146.6033 0.60332266 1820 P76128 ddpA Probable D,D-dipeptide-binding periplasmic protein DdpA yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 26.643 25.738 2 0.035753 11480 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 67.993 66.148 65834000 23045000 22319000 20469000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22162 1820 21462 412013;412014;412015 252604;252605 252605 0 VNVDAGNR Unmodified 843.41988 0.41987898 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 10.981 11.805 2 0.013529 2758 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 73.324 55.557 114280000 16845000 14499000 17587000 0 0 0 0 0 0 0 0 0 17993000 14053000 11992000 0 0 0 0 0 21305000 0 0 0 22163 486 21463 412016;412017;412018;412019;412020;412021;412022 252606;252607;252608 252608 3 VNVGDKVK Unmodified 857.49707 0.49706667 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.778 11.431 2 0.00011385 2044 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 167.9 126.01 4604900000 7720600 2923100 4845300 1082700000 918270000 984320000 0 0 0 0 0 0 1800100 0 0 33881000 0 0 0 0 0 529190000 518630000 520640000 22164 133 21464 412023;412024;412025;412026;412027;412028;412029;412030;412031;412032;412033;412034;412035;412036 252609;252610;252611;252612;252613;252614;252615;252616;252617 252617 9 VNVGDKVSTGSLIMVFEVAGEAGAAAPAAK Unmodified 2858.4848 0.48479401 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 4 5 5 2 2 2 1 1 1 1 1 1 1 3 3 3 53.326 51.98 2;3;4;5 5.5971E-53 20729 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 288.25 278.72 2949300000 0 4688000 0 446970000 550490000 537210000 0 0 0 41392000 36247000 34733000 3177800 3615800 2830900 6415200 0 0 7926100 5612300 6226700 473970000 396950000 390830000 22165 133 21465 412037;412038;412039;412040;412041;412042;412043;412044;412045;412046;412047;412048;412049;412050;412051;412052;412053;412054;412055;412056;412057;412058;412059;412060;412061;412062;412063;412064;412065;412066;412067;412068;412069;412070;412071;412072;412073 252618;252619;252620;252621;252622;252623;252624;252625;252626;252627;252628;252629;252630;252631;252632;252633;252634;252635;252636;252637;252638;252639;252640;252641;252642;252643;252644;252645;252646 252628 28 VNVGDKVSTGSLIMVFEVAGEAGAAAPAAK Oxidation (M) 2874.4797 0.47970863 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 51.119 49.817 3 7.5812E-09 18012 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 110.08 107.76 30617000 0 0 0 6234100 9032500 5300100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4144300 0 5906400 22166 133 21465 412074;412075;412076;412077;412078 252647 252647 49 1 VNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEAAPAAAPAPAAGVK Unmodified 4259.226 0.22600714 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By matching 1 1 50.467 49.138 4 0.00054895 17749 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 59.962 59.962 15010000 0 0 0 0 12492000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2518100 22167 133 21466 412079;412080 252648 252648 1 VNVGDTLCIVEAMK Unmodified 1547.7687 0.76874978 652 P0ABD8 accB Biotin carboxyl carrier protein of acetyl-CoA carboxylase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 48.334 47.112 2 0.0002896 22188 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 80.245 73.861 63714000 0 0 0 0 0 0 0 0 0 0 0 0 7745400 8118000 0 0 0 0 16133000 15831000 15886000 0 0 0 22168 652 21467 412081;412082;412083;412084;412085 252649 252649 1 VNVGGDR Unmodified 715.3613 0.36130147 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 10.674 11.354 2 0.0036202 2643 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.22 98.209 817360000 0 152640000 0 0 2173000 0 0 0 121820000 5518200 0 0 187410000 0 156330000 0 0 3146400 0 188330000 0 0 0 0 22169 161 21468 412086;412087;412088;412089;412090;412091;412092;412093 252650;252651;252652;252653 252651 4 VNVITDGCR Unmodified 1032.5022 0.50222841 1180 P21369 pncA Pyrazinamidase/nicotinamidase yes yes 0 0 0 By MS/MS 1 15.517 16.57 2 0.0046387 5376 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 77.318 64.321 37736000 0 0 0 0 0 0 0 0 0 0 0 0 0 37736000 0 0 0 0 0 0 0 0 0 0 22170 1180 21469 412094 252654 252654 1 VNVLGVASR Unmodified 913.53451 0.53451481 980 P0AG20 relA GTP pyrophosphokinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.232 17.767 2 0.080547 6542 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 45.081 13.792 150620000 6242400 7362100 6935600 0 0 0 19139000 17062000 14228000 1121500 1314500 1276400 9664600 8764400 7251700 0 0 0 16781000 16534000 16458000 483110 0 0 22171 980 21470 412095;412096;412097;412098;412099;412100;412101;412102;412103;412104;412105;412106;412107;412108;412109;412110 252655;252656;252657;252658;252659;252660 252656 6 VNVTINTTSVDTNHAER Unmodified 1869.9181 0.91806787 470 P0A8X2 yceI Protein YceI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 19.608 20.146 2;3 9.8756E-50 7696 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 276.18 252.51 553180000 72145000 54445000 63335000 0 0 0 35461000 35668000 38491000 0 0 0 29655000 26971000 27370000 0 0 0 55697000 62342000 51605000 0 0 0 22172 470 21471 412111;412112;412113;412114;412115;412116;412117;412118;412119;412120;412121;412122;412123;412124;412125;412126;412127;412128;412129;412130;412131 252661;252662;252663;252664;252665 252664 5 VNYGVTVLPTFK Unmodified 1336.7391 0.73908786 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 1 1 42.56 40.811 2;3 1.28E-08 19044 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 173.64 161.41 8412000000 128440000 135510000 129460000 1898400 1756400 2651300 799160000 821580000 782190000 0 0 0 809260000 750810000 747630000 0 0 0 1144800000 1084200000 1065600000 2495900 0 4514300 22173 895 21472 412132;412133;412134;412135;412136;412137;412138;412139;412140;412141;412142;412143;412144;412145;412146;412147;412148;412149;412150;412151;412152;412153;412154;412155;412156;412157 252666;252667;252668;252669;252670;252671;252672;252673;252674;252675;252676;252677;252678;252679;252680;252681;252682;252683;252684;252685;252686 252683 21 VNYQGIGSSGGVK Unmodified 1264.6412 0.64116473 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.997 18.366 2 9.3249E-07 7082 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.42 122.64 77733000 0 18571000 0 2082900 2209900 2445400 0 0 0 5641500 6210200 7332700 0 0 0 0 0 0 1838200 1268000 3161500 9020200 8628000 9323900 22174 994 21473 412158;412159;412160;412161;412162;412163;412164;412165;412166;412167;412168;412169;412170;412171;412172;412173;412174 252687;252688;252689;252690;252691;252692;252693;252694;252695;252696;252697;252698 252691 12 VPAGMTMMYHAQER Unmodified 1620.7211 0.72108808 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1 1 1 2 2 1 1 1 1 1 1 1 2 2 2 23.933 22.979 2;3 5.7845E-08 7897 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 154.15 140.95 486670000 0 6053800 5410900 7092900 6801200 5325000 13740000 11439000 13811000 25088000 21634000 20769000 14740000 12974000 12158000 0 0 0 17970000 17972000 20201000 79598000 89026000 84864000 22175 205 21474 412175;412176;412177;412178;412179;412180;412181;412182;412183;412184;412185;412186;412187;412188;412189;412190;412191;412192;412193;412194;412195;412196;412197;412198;412199;412200;412201 252699;252700;252701;252702;252703;252704;252705;252706;252707;252708;252709;252710;252711;252712;252713;252714 252705 15 VPAGSVVVSGNLPSK Unmodified 1409.7878 0.78782897 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 1 2 2 2 2 1 2 2 2 2 1 2 2 2 1 1 25.499 24.345 2;3 7.3553E-27 10365 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 286.19 277.49 4837200000 573790000 577170000 525640000 4152600 6179300 5491800 378170000 354510000 351550000 9525000 1551500 10818000 312270000 269960000 280140000 1718600 0 0 388640000 390820000 387640000 1995700 5437000 0 22176 512 21475 412202;412203;412204;412205;412206;412207;412208;412209;412210;412211;412212;412213;412214;412215;412216;412217;412218;412219;412220;412221;412222;412223;412224;412225;412226;412227;412228;412229;412230;412231;412232;412233;412234;412235;412236;412237 252715;252716;252717;252718;252719;252720;252721;252722;252723;252724;252725;252726;252727;252728;252729;252730;252731;252732;252733;252734;252735;252736;252737;252738;252739;252740;252741;252742 252741 28 VPAGSVVVSGNLPSKDGK Unmodified 1709.9312 0.93119874 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 20.127 20.559 3 0.083823 5893 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 30.152 28.134 10915000 0 0 0 1851800 2230700 2138700 0 0 0 0 0 0 1632900 0 0 0 0 0 0 0 3060500 0 0 0 22177 512 21476 412238;412239;412240;412241;412242 252743 252743 0 VPANPEK Unmodified 753.4021 0.40210366 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 10.608 10.893 2 0.12795 2171 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 48.787 43.962 48709000 0 0 0 0 0 0 0 0 135050 0 0 0 0 0 0 14126000 11434000 12506000 10508000 0 0 0 0 0 22178 222 21477 412243;412244;412245;412246;412247 252744 252744 1 VPATAIR Unmodified 726.43882 0.43882351 1941 P77775 yfcH Epimerase family protein YfcH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.48 13.232 2 0.0067527 2889 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 94.163 44.852 78973000 0 12219000 7742500 4895900 4023400 4790100 5953700 11516000 10118000 0 5976600 8106300 0 0 0 0 0 0 0 3631600 0 0 0 0 22179 1941 21478 412248;412249;412250;412251;412252;412253;412254;412255;412256;412257;412258 252745;252746;252747 252746 3 VPAYDPEAVAEHAIGMMMTLNR Unmodified 2415.1385 0.13850745 1608 P52643 ldhA D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.034 53.561 3 1.4959E-10 26349 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 128.38 127.75 835930000 72361000 78575000 75021000 0 0 0 86223000 76466000 82530000 0 0 0 67893000 62334000 55454000 0 0 0 59805000 62925000 56342000 0 0 0 22180 1608 21479 412259;412260;412261;412262;412263;412264;412265;412266;412267;412268;412269;412270 252748;252749;252750;252751;252752;252753;252754;252755;252756;252757 252754 10 VPDELPAVNFLR Unmodified 1368.7402 0.74015049 163 P07623 metA Homoserine O-succinyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 48.057 46.654 2 1.291E-05 23151 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 155.84 151.83 49105000 4994700 7217000 5350300 0 0 0 8275600 7914600 7064600 0 0 0 2613400 2163600 0 0 0 0 0 1916600 1594700 0 0 0 22181 163 21480 412271;412272;412273;412274;412275;412276;412277;412278;412279;412280 252758;252759 252759 2 VPDGLDSAAASSITCAGVTTYK Unmodified 2183.0416 0.041613403 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 38.628 36.885 2 1.5458E-34 18006 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 207.55 204.76 69942000 14088000 11616000 13516000 0 0 0 6636200 5438500 5850600 0 0 0 0 0 0 0 0 0 4828900 4503800 3464600 0 0 0 22182 1541 21481 412281;412282;412283;412284;412285;412286;412287;412288;412289 252760 252760 1 VPDGTVDPFR Unmodified 1101.5455 0.54547343 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.943 28.432 2 4.7873E-05 13474 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 159.58 155.65 276040000 0 2579500 0 0 0 0 43609000 43322000 46252000 2871700 3023400 2624400 26846000 26927000 23794000 547940 0 0 19483000 17088000 16095000 973020 0 0 22183 506 21482 412290;412291;412292;412293;412294;412295;412296;412297;412298;412299;412300;412301;412302;412303;412304 252761;252762;252763;252764;252765;252766;252767;252768 252763 8 VPDIGADEVEITEILVK Unmodified 1838.9877 0.98771056 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 3 4 3 2 2 2 3 2 3 2 2 2 2 2 3 3 3 4 54.75 53.456 2;3 3.7783E-24 19460 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 257.76 244.56 20746000000 557420000 557970000 486040000 1875200000 1889400000 1930300000 628960000 610590000 599080000 348430000 308410000 240910000 535960000 522630000 431680000 91136000 85807000 87501000 787380000 693280000 659540000 2383200000 2157600000 2277500000 22184 133 21483 412305;412306;412307;412308;412309;412310;412311;412312;412313;412314;412315;412316;412317;412318;412319;412320;412321;412322;412323;412324;412325;412326;412327;412328;412329;412330;412331;412332;412333;412334;412335;412336;412337;412338;412339;412340;412341;412342;412343;412344;412345;412346;412347;412348;412349;412350;412351;412352;412353;412354;412355;412356;412357;412358;412359;412360;412361;412362;412363;412364;412365;412366 252769;252770;252771;252772;252773;252774;252775;252776;252777;252778;252779;252780;252781;252782;252783;252784;252785;252786;252787;252788;252789;252790;252791;252792;252793;252794;252795;252796;252797;252798;252799;252800;252801;252802;252803;252804;252805;252806;252807;252808;252809;252810;252811;252812;252813;252814;252815;252816;252817;252818 252798 49 VPDIHNVALMEDR Unmodified 1507.7453 0.74531222 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 2 2 2 2 2 1 1 1 30.569 29.203 2;3 4.8697E-13 13552 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 200.27 189.17 1079500000 244500000 263550000 211380000 0 0 480860 67047000 66499000 67467000 0 0 0 35615000 43597000 33478000 0 0 0 13120000 15610000 17108000 0 0 0 22185 1465 21484 412367;412368;412369;412370;412371;412372;412373;412374;412375;412376;412377;412378;412379;412380;412381;412382;412383;412384;412385;412386;412387;412388 252819;252820;252821;252822;252823;252824;252825;252826;252827;252828;252829;252830;252831;252832;252833 252825 14 VPDLENQVK Unmodified 1040.5502 0.55022446 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 19.586 20.044 2 0.0006636 7906 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 104.44 51.721 120200000 0 0 6217700 0 462320 712280 16323000 16242000 17605000 0 0 0 13618000 0 11696000 0 0 0 16891000 20431000 0 0 0 0 22186 807 21485 412389;412390;412391;412392;412393;412394;412395;412396;412397;412398 252834;252835;252836;252837;252838;252839 252836 5 VPDMSAYR Unmodified 937.43275 0.43275186 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.088 20.405 2 0.0011037 5841 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 111.65 92.983 294010000 78404000 70550000 60844000 0 0 0 10409000 9901300 9846000 0 0 0 5615400 5526400 3899900 6784500 7098800 6101400 6678300 6777700 5569100 0 0 0 22187 733 21486 412399;412400;412401;412402;412403;412404;412405;412406;412407;412408;412409;412410;412411;412412;412413 252840;252841;252842;252843;252844;252845;252846;252847;252848;252849;252850;252851 252842 12 VPDMSAYRK Unmodified 1065.5277 0.52771487 733 P0ACJ0 lrp Leucine-responsive regulatory protein yes yes 0 0 1 By MS/MS By matching 1 1 14.703 14.68 3 0.0019529 3798 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 66.568 58.896 16982000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14722000 2260900 0 0 0 0 0 0 0 22188 733 21487 412414;412415 252852 252852 1 VPDNANIIR Unmodified 1010.5509 0.55089316 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS 1 18.937 19.24 2 0.097957 7413 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 50.607 26.452 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22189 722 21488 412416 252853 252853 1 VPDSQVLADLDHVASWASR Unmodified 2065.0229 0.022867292 1614 P56262 ysgA Putative carboxymethylenebutenolidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 1 1 1 1 1 50.16 48.742 2;3 6.5292E-30 24000 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 255.91 242.24 696180000 180550000 154100000 146120000 0 0 0 39530000 33095000 26787000 1972700 0 0 12834000 12063000 14165000 0 0 0 25389000 26546000 23030000 0 0 0 22190 1614 21489 412417;412418;412419;412420;412421;412422;412423;412424;412425;412426;412427;412428;412429;412430;412431;412432 252854;252855;252856;252857;252858;252859 252856 6 VPDTLDVWFDSGSTHSSVVDVRPEFAGHAADMYLEGSDQHR Unmodified 4529.0619 0.061854934 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 3 3 2 2 2 2 2 2 47.945 46.489 4;5;6 1.1255E-30 22717 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 164.8 160.11 1347400000 94349000 66115000 63425000 0 0 0 247920000 186840000 183360000 0 0 0 55353000 54277000 51892000 0 0 0 112280000 122600000 109040000 0 0 0 22191 58 21490 412433;412434;412435;412436;412437;412438;412439;412440;412441;412442;412443;412444;412445;412446;412447;412448;412449;412450;412451;412452;412453;412454;412455;412456;412457;412458 252860;252861;252862;252863;252864;252865;252866;252867;252868;252869;252870;252871;252872;252873;252874;252875 252866 16 VPDVGIVVASHVHNFFAEESNR Unmodified 2422.203 0.20295692 1102 P15042 ligA DNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.64 44.472 4 5.0013E-05 21759 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83.606 82.309 480220000 34084000 29134000 30604000 0 0 0 38564000 34365000 41918000 0 0 0 37937000 37761000 31605000 8355500 6346300 6047100 45954000 47779000 49770000 0 0 0 22192 1102 21491 412459;412460;412461;412462;412463;412464;412465;412466;412467;412468;412469;412470;412471;412472;412473 252876;252877;252878;252879;252880;252881;252882;252883;252884;252885;252886;252887;252888 252884 12 VPEDDEEQQLEALR Unmodified 1669.7795 0.7795087 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 31.471 30.097 2 9.2596E-09 14038 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 197.73 188.08 71698000 12891000 15370000 11491000 0 0 0 6692500 5303100 5851700 0 0 0 0 6480300 3478800 0 0 0 0 0 4139200 0 0 0 22193 1353 21492 412474;412475;412476;412477;412478;412479;412480;412481;412482 252889;252890 252890 2 VPEELMK Unmodified 844.43644 0.43644025 627 P0AB43 ycgL Protein YcgL yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 17.792 18.395 2 0.10401 6706 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 53.163 40.732 215230000 29056000 30660000 23483000 0 0 0 0 0 0 458140 0 0 30441000 26641000 0 0 0 0 33724000 40765000 0 0 0 0 22194 627 21493 412483;412484;412485;412486;412487;412488;412489;412490 252891;252892 252892 2 VPEGIGETAIVQIR Unmodified 1480.8249 0.82494275 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 37.713 36.034 2;3 2.1755E-26 17819 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 232 223.04 2054000000 173670000 173620000 140950000 693030 629740 787990 193320000 189590000 189960000 0 0 0 148160000 137620000 148710000 0 0 0 187020000 189130000 180190000 0 0 0 22195 1294 21494 412491;412492;412493;412494;412495;412496;412497;412498;412499;412500;412501;412502;412503;412504;412505;412506;412507;412508;412509;412510;412511;412512;412513;412514;412515;412516;412517 252893;252894;252895;252896;252897;252898;252899;252900;252901;252902;252903;252904;252905;252906;252907;252908;252909;252910;252911;252912 252893 20 VPEPFIPK Unmodified 925.5273 0.52730417 57 P00954 trpS Tryptophan--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.273 28.017 2 0.0087861 12981 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 81.119 76.294 3018100000 236110000 232410000 255280000 0 0 0 225920000 217450000 203540000 0 0 0 271420000 267680000 239880000 0 0 0 293360000 281870000 293180000 0 0 0 22196 57 21495 412518;412519;412520;412521;412522;412523;412524;412525;412526;412527;412528;412529 252913;252914;252915;252916;252917;252918;252919;252920;252921 252918 9 VPEQYQQEHVQGAINIPLK Unmodified 2190.1433 0.14331678 1220 P23857 pspE Thiosulfate sulfurtransferase PspE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 2 2 31.036 29.622 2;3 1.4835E-36 14278 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 266.28 244.73 3019200000 191740000 0 143700000 0 0 0 498500000 485900000 444410000 0 0 0 171190000 185060000 182310000 0 0 0 248520000 233270000 234580000 0 0 0 22197 1220 21496 412530;412531;412532;412533;412534;412535;412536;412537;412538;412539;412540;412541;412542;412543;412544;412545;412546;412547;412548 252922;252923;252924;252925;252926;252927;252928;252929;252930;252931;252932;252933;252934;252935;252936;252937;252938;252939;252940 252923 19 VPESWIVQGDFEPESGYR Unmodified 2093.9694 0.96943474 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 45.842 44.37 2 3.9171E-29 22109 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 214.88 202.96 268780000 31693000 30850000 32335000 0 0 0 15906000 17287000 14623000 0 0 0 17094000 19101000 16216000 0 0 0 24991000 24796000 23885000 0 0 0 22198 740 21497 412549;412550;412551;412552;412553;412554;412555;412556;412557;412558;412559;412560 252941;252942 252941 2 VPETMPPQLFEK Unmodified 1414.7166 0.71663786 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 36.924 35.261 2 1.4887E-06 17092 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 172.56 147.68 334480000 43150000 40482000 40740000 0 0 0 56759000 57756000 61507000 0 0 0 11367000 12009000 10707000 0 0 0 0 0 0 0 0 0 22199 428 21498 412561;412562;412563;412564;412565;412566;412567;412568;412569 252943;252944;252945;252946;252947;252948;252949;252950;252951;252952;252953;252954;252955;252956 252948 13 VPFAEVASDGSEAFPFLR Unmodified 1937.9523 0.95232811 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 2 2 2 2 2 54.312 52.86 2;3 2.0923E-55 24892 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 284.32 264.66 587330000 59148000 51459000 57053000 0 0 0 44127000 43922000 38717000 0 0 0 25524000 53363000 55934000 0 0 0 55255000 55630000 47202000 0 0 0 22200 1550 21499 412570;412571;412572;412573;412574;412575;412576;412577;412578;412579;412580;412581;412582;412583;412584;412585;412586;412587;412588;412589;412590;412591;412592 252957;252958;252959;252960;252961;252962;252963 252963 7 VPFIDTFDLR Unmodified 1221.6394 0.63937381 1839 P76235 yeaH UPF0229 protein YeaH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.887 49.51 2 0.00036718 24147 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.69 98.748 110430000 25097000 21531000 19225000 1548900 1739800 1760300 8271600 11245000 8315800 2812900 2871100 2074400 2488800 1451800 0 0 0 0 0 0 0 0 0 0 22201 1839 21500 412593;412594;412595;412596;412597;412598;412599;412600;412601;412602;412603;412604;412605;412606 252964;252965;252966;252967;252968 252967 3 VPFIHFFDGFR Unmodified 1380.6979 0.69789175 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.8 49.443 3 5.4594E-05 22958 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 106.62 102.57 495020000 51330000 56326000 48015000 651970 1039700 706360 34042000 43542000 42645000 654850 870730 1284900 32844000 28444000 31815000 0 0 0 40556000 44153000 36101000 0 0 0 22202 1609 21501 412607;412608;412609;412610;412611;412612;412613;412614;412615;412616;412617;412618;412619;412620;412621;412622;412623;412624 252969;252970;252971;252972;252973;252974;252975;252976;252977;252978;252979;252980 252980 12 VPFLDKK Unmodified 845.50109 0.50108942 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 17.601 18.171 2 0.0082617 6559 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 96.51 55.008 99638000 0 0 0 0 0 0 30101000 26048000 25640000 0 717790 0 2467500 1977400 0 0 0 0 3385900 3635800 5665000 0 0 0 22203 1191 21502 412625;412626;412627;412628;412629;412630;412631;412632;412633;412634 252981;252982;252983;252984 252984 4 VPGDFAK Unmodified 732.38064 0.38063993 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 14.457 15.072 2 0.062312 4784 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.788 34.679 216550000 73533000 70733000 70465000 0 0 677190 0 0 0 1140800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22204 1194 21503 412635;412636;412637;412638;412639 252985 252985 1 VPGGASLTR Unmodified 856.47667 0.47666558 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.387 14.271 2 0.00020056 4518 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.52 112.87 2306100000 113120000 131320000 108160000 0 0 882380 243790000 211680000 206260000 0 0 0 222900000 217310000 171170000 0 0 0 231850000 231550000 216160000 0 0 0 22205 1189 21504 412640;412641;412642;412643;412644;412645;412646;412647;412648;412649;412650;412651;412652 252986;252987;252988;252989;252990;252991 252986 6 VPGLDFK Unmodified 774.42759 0.42759012 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 2 2 28.535 27.339 1;2 0.0092255 12586 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 88.029 72.808 1129400000 309890000 303810000 302230000 0 0 0 16427000 18116000 16621000 0 0 0 19286000 20987000 17849000 0 0 0 32203000 33584000 38445000 0 0 0 22206 1111 21505 412653;412654;412655;412656;412657;412658;412659;412660;412661;412662;412663;412664;412665;412666;412667;412668;412669 252992;252993;252994;252995;252996;252997;252998;252999;253000;253001 252995 9 VPGLDHK Unmodified 764.41809 0.41808807 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.72 12.436 2 0.013832 3282 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 83.377 60.755 888480000 67530000 52530000 57099000 0 488680 0 121660000 90635000 93877000 0 298150 0 61968000 58689000 52157000 0 0 0 82035000 79116000 67170000 1333000 757730 1131300 22207 702 21506 412670;412671;412672;412673;412674;412675;412676;412677;412678;412679;412680;412681;412682;412683;412684;412685;412686 253002;253003;253004;253005;253006;253007;253008;253009;253010;253011;253012 253007 11 VPGSLIALHR Unmodified 1061.6346 0.63456321 1765 P75728 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 2 2 2 2 2 2 2 2 2 1 1 23.935 22.875 2;3 6.0446E-05 10243 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 104.42 97.043 192850000 0 6764200 0 6904800 5742300 6280500 42407000 36016000 34782000 14101000 11330000 13959000 6474900 0 0 0 0 0 8086500 0 0 0 0 0 22208 1765 21507 412687;412688;412689;412690;412691;412692;412693;412694;412695;412696;412697;412698;412699;412700;412701;412702;412703;412704;412705;412706;412707 253013;253014;253015;253016;253017;253018 253013 6 VPGSPDQVDVVYK Unmodified 1401.714 0.71399532 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.016 25.815 2 2.3774E-05 11236 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 131.54 115.21 170040000 8454400 6900700 6363800 0 0 0 9993100 9602700 8885600 2773500 3626400 0 14233000 12163000 11104000 0 0 586340 26215000 26054000 23086000 0 0 0 22209 486 21508 412708;412709;412710;412711;412712;412713;412714;412715;412716;412717;412718;412719;412720;412721;412722 253019 253019 0 VPGTQFQLDPVQAAFNIGAMIR Unmodified 2372.2311 0.23108593 1888 P77243 prpD 2-methylcitrate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 55.48 54.074 2 2.1909E-88 26944 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 323.16 314.11 165300000 55327000 56022000 53947000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22210 1888 21509 412723;412724;412725 253020;253021;253022 253020 3 VPGYLEEEGANK Unmodified 1304.6248 0.62484596 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.124 20.514 2 8.9549E-12 7905 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 189.38 184.93 274720000 25531000 15745000 17194000 0 0 0 30669000 25065000 25369000 0 0 0 26250000 17942000 20990000 0 0 0 24751000 23535000 21683000 0 0 0 22211 702 21510 412726;412727;412728;412729;412730;412731;412732;412733;412734;412735;412736;412737 253023;253024 253024 2 VPHFGYADR Unmodified 1060.509 0.50902834 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 1 2 1 2 2 2 1 2 2 2 2 1 1 16.965 17.514 2;3 0.00014493 6153 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 100.25 96.133 4385200000 498370000 442410000 364410000 0 0 0 408170000 450920000 401740000 2284300 2294300 1703100 262010000 277770000 268420000 403360 0 0 336350000 347770000 313580000 3251900 1631000 1706500 22212 1658 21511 412738;412739;412740;412741;412742;412743;412744;412745;412746;412747;412748;412749;412750;412751;412752;412753;412754;412755;412756;412757;412758;412759;412760;412761;412762;412763;412764;412765;412766;412767;412768;412769;412770 253025;253026;253027;253028;253029;253030;253031;253032;253033;253034;253035;253036;253037;253038;253039;253040;253041;253042;253043;253044;253045;253046;253047 253042 23 VPIGVANVAK Unmodified 966.58622 0.58621603 1209 P23524 garK Glycerate 2-kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.534 21.675 2 0.0003194 8416 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 110.81 97.98 212330000 15543000 14581000 12252000 328190 0 352950 23513000 6661100 5931400 0 0 0 24536000 21164000 17784000 0 0 0 21360000 22694000 25627000 0 0 0 22213 1209 21512 412771;412772;412773;412774;412775;412776;412777;412778;412779;412780;412781;412782;412783;412784 253048;253049;253050;253051 253050 4 VPIMIDSSK Unmodified 988.52632 0.52631789 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.248 23.232 2 0.00044323 10141 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.12 97.909 152830000 16467000 13262000 15229000 2280800 1716200 1926100 11665000 9789800 10164000 4749700 3963400 4366000 5969600 5896600 7155400 0 0 0 9034700 10615000 11520000 1917700 2358100 2784100 22214 1083 21513 412785;412786;412787;412788;412789;412790;412791;412792;412793;412794;412795;412796;412797;412798;412799;412800;412801;412802;412803;412804;412805 253052;253053;253054;253055;253056;253057;253058;253059 253056 1 VPKDVFMGVDELQVGMR Unmodified 1918.9645 0.96448948 532 P0A9K9 slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 1 1 1 1 1 1 1 1 43.39 41.757 3 9.7347E-05 14864 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 50.722 49.576 95615000 0 0 0 9217700 7882800 10598000 0 0 0 11393000 9801900 9068500 0 0 0 0 3071400 5448100 0 0 0 9221900 11023000 8888700 22215 532 21514 412806;412807;412808;412809;412810;412811;412812;412813;412814;412815;412816;412817 253060;253061 253060 2 VPLAPDIDAAIIAR Unmodified 1433.8242 0.82421447 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.954 45.378 2 1.8959E-06 18513 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 126.71 126.71 276480000 10415000 0 9050200 2953600 2548700 4101700 27081000 25985000 23567000 9284100 6902500 8422200 18563000 16930000 16904000 0 0 0 26342000 27832000 23159000 5313500 5116900 6013000 22216 595 21515 412818;412819;412820;412821;412822;412823;412824;412825;412826;412827;412828;412829;412830;412831;412832;412833;412834;412835;412836;412837 253062;253063;253064;253065;253066;253067;253068;253069;253070 253062 9 VPLFVQIGEVIK Unmodified 1340.8068 0.80677349 265 P0A6N4 efp Elongation factor P yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 2 1 1 1 3 3 2 1 1 1 2 3 2 1 1 1 2 3 3 1 1 1 52.815 51.573 2;3 2.0403E-08 25301 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.65 161.17 10278000000 771510000 776450000 682380000 9065800 10688000 8195900 899940000 817730000 829980000 3553600 5777900 5933100 826560000 822110000 877110000 7900300 5683700 5496200 1004500000 956090000 938070000 4093900 4369500 5047700 22217 265 21516 412838;412839;412840;412841;412842;412843;412844;412845;412846;412847;412848;412849;412850;412851;412852;412853;412854;412855;412856;412857;412858;412859;412860;412861;412862;412863;412864;412865;412866;412867;412868;412869;412870;412871;412872;412873;412874;412875;412876;412877;412878;412879 253071;253072;253073;253074;253075;253076;253077;253078;253079;253080;253081;253082;253083;253084;253085;253086;253087;253088;253089;253090;253091;253092;253093;253094;253095;253096;253097;253098;253099 253088 27 VPLGVIGVIYEAR Unmodified 1384.8078 0.80783613 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.57 49.195 2 7.1729E-07 22909 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 172.27 170.12 323590000 29274000 27064000 27558000 0 0 0 32568000 35748000 31652000 0 0 0 21933000 17562000 18761000 0 0 0 29187000 26055000 26228000 0 0 0 22218 148 21517 412880;412881;412882;412883;412884;412885;412886;412887;412888;412889;412890;412891 253100;253101;253102;253103;253104;253105;253106;253107;253108;253109;253110 253110 7 VPLHTLR Unmodified 834.50757 0.50757178 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.727 13.329 2 0.00045787 3603 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 153.61 117.03 4107800000 490050000 559410000 519200000 12306000 14856000 13216000 191190000 187250000 177260000 27422000 24397000 28421000 254660000 244480000 250430000 17615000 10782000 8250200 399980000 331010000 303560000 14968000 12295000 14811000 22219 374 21518 412892;412893;412894;412895;412896;412897;412898;412899;412900;412901;412902;412903;412904;412905;412906;412907;412908;412909;412910;412911;412912;412913;412914;412915 253111;253112;253113;253114;253115;253116;253117;253118;253119;253120;253121;253122;253123;253124;253125;253126;253127;253128;253129;253130;253131;253132;253133;253134 253133 24 VPLIVGR Unmodified 752.49086 0.49085908 347 P0A7I7 ribA GTP cyclohydrolase-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.299 23.313 2 0.00084899 10536 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.22 41.502 1082600000 95291000 71503000 74579000 2341600 2150700 2982400 115920000 110510000 99123000 2343500 1701700 2120000 55280000 59290000 61924000 1244400 0 0 110460000 99934000 109400000 1564800 1607800 1299700 22220 347 21519 412916;412917;412918;412919;412920;412921;412922;412923;412924;412925;412926;412927;412928;412929;412930;412931;412932;412933;412934;412935;412936;412937 253135;253136;253137;253138;253139;253140;253141;253142;253143;253144;253145;253146;253147;253148 253136 14 VPLPPLTEER Unmodified 1149.6394 0.63937381 385 P0A805 frr Ribosome-recycling factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.764 30.24 2 2.0876E-06 14241 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 157.91 151.02 10069000000 923660000 889050000 817720000 1618900 0 1774200 842810000 810000000 901600000 2186800 0 0 722210000 670520000 662050000 0 0 0 980550000 918830000 920730000 1242000 1244400 1423100 22221 385 21520 412938;412939;412940;412941;412942;412943;412944;412945;412946;412947;412948;412949;412950;412951;412952;412953;412954;412955 253149;253150;253151;253152;253153;253154;253155;253156;253157;253158;253159 253151 11 VPLPVVAQTAPEQQEENNADNR Unmodified 2418.1775 0.17753003 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 2 2 2 32.541 31.219 2;3 6.6444E-22 14904 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 167.99 165.19 325600000 31801000 33165000 32481000 0 0 0 19698000 14799000 18133000 0 0 0 24325000 20668000 20326000 0 0 0 37650000 36799000 35757000 0 0 0 22222 1183 21521 412956;412957;412958;412959;412960;412961;412962;412963;412964;412965;412966;412967;412968;412969;412970;412971;412972;412973;412974;412975;412976;412977;412978 253160;253161;253162;253163;253164;253165;253166;253167;253168;253169;253170 253161 11 VPLVSGAAIR Unmodified 981.59712 0.59711507 1077 P12282 moeB Molybdopterin-synthase adenylyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.971 24.931 2 0.0039036 11036 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 70.332 59.263 132380000 29033000 32075000 26669000 636500 579020 558160 0 0 0 0 0 0 15815000 14215000 12794000 0 0 0 0 0 0 0 0 0 22223 1077 21522 412979;412980;412981;412982;412983;412984;412985;412986;412987 253171;253172 253172 2 VPMNIVAQR Unmodified 1026.5644 0.56443473 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.731 22.165 2 4.7853E-06 9735 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 173.93 173.93 6551000000 412330000 376360000 355980000 5803000 4510500 3860500 519150000 496700000 508920000 13621000 13369000 12947000 536520000 503720000 494530000 8666600 5591500 6583700 745700000 754360000 745810000 10244000 7859900 7823100 22224 396 21523 412988;412989;412990;412991;412992;412993;412994;412995;412996;412997;412998;412999;413000;413001;413002;413003;413004;413005;413006;413007;413008;413009;413010;413011;413012 253173;253174;253175;253176;253177;253178;253179;253180;253181;253182;253183;253184;253185;253186;253187;253188;253189;253190;253191;253192;253193;253194;253195;253196 253180 24 VPMNIVAQR Oxidation (M) 1042.5593 0.55934935 396 P0A850 tig Trigger factor yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 16.039 16.791 2 0.11684 5944 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 43.246 32.373 40036000 4622700 3577900 2756100 0 0 0 8852500 8006500 0 0 0 0 0 4129800 0 0 0 0 8090100 0 0 0 0 0 22225 396 21523 413013;413014;413015;413016;413017;413018;413019 253197;253198 253197 180 2 VPMQQLLK Unmodified 955.55247 0.55247306 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 27.484 26.272 2 0.00054413 12377 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.47 110.45 1990000000 176330000 163390000 146050000 0 0 0 188360000 179350000 176860000 0 0 0 156730000 0 0 0 0 0 266450000 266200000 266620000 0 0 3612800 22226 29 21524 413020;413021;413022;413023;413024;413025;413026;413027;413028;413029;413030 253199;253200;253201;253202;253203;253204;253205;253206;253207;253208 253199 10 VPNGVSGTVIDVQVFTR Unmodified 1786.9577 0.95774784 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 3 3 3 2 2 2 3 4 4 1 2 1 3 3 3 46.268 44.903 2;3 6.6713E-31 18155 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 276.97 258.71 9252500000 27652000 21794000 23839000 0 3894500 3182700 18113000 16733000 17886000 612530000 576170000 578740000 19322000 20757000 18911000 2240400000 1702100000 1759400000 23408000 27985000 21490000 508040000 489200000 520900000 22227 463 21525 413031;413032;413033;413034;413035;413036;413037;413038;413039;413040;413041;413042;413043;413044;413045;413046;413047;413048;413049;413050;413051;413052;413053;413054;413055;413056;413057;413058;413059;413060;413061;413062;413063;413064;413065;413066;413067;413068;413069;413070;413071;413072;413073;413074;413075;413076;413077;413078;413079;413080;413081;413082;413083;413084 253209;253210;253211;253212;253213;253214;253215;253216;253217;253218;253219;253220;253221;253222;253223;253224;253225;253226;253227;253228;253229;253230;253231;253232;253233;253234;253235;253236;253237;253238;253239;253240;253241;253242;253243;253244;253245;253246;253247;253248;253249;253250;253251;253252;253253;253254;253255;253256;253257;253258;253259;253260;253261;253262;253263;253264;253265 253228 50 VPPGVDEAAYVK Unmodified 1243.6449 0.64485312 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.849 23.848 2 1.6122E-05 10445 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 125.48 114.77 2063600000 286360000 293390000 268320000 717700 737270 0 118480000 126960000 104930000 0 0 0 102460000 97897000 89233000 0 0 0 200510000 181770000 191860000 0 0 0 22228 1444 21526 413085;413086;413087;413088;413089;413090;413091;413092;413093;413094;413095;413096;413097;413098 253266;253267;253268;253269;253270;253271;253272;253273;253274;253275;253276;253277;253278;253279;253280;253281;253282;253283;253284;253285;253286;253287;253288;253289;253290;253291;253292;253293;253294;253295;253296;253297;253298;253299;253300 253280 35 VPPIGITDR Unmodified 966.54983 0.54983053 1514 P39187 ytfJ Uncharacterized protein YtfJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.424 23.518 2 0.0002835 10129 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.29 100.51 270130000 48848000 49859000 45628000 0 0 0 16932000 14684000 14491000 0 0 0 11749000 9885600 8747400 0 0 0 17792000 16110000 15407000 0 0 0 22229 1514 21527 413099;413100;413101;413102;413103;413104;413105;413106;413107;413108;413109;413110 253301;253302;253303;253304;253305;253306;253307;253308;253309 253306 9 VPQDVSLIGYDNVR Unmodified 1573.81 0.81002097 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 36.446 34.849 2;3 9.0127E-11 16162 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 202 195.47 454230000 48369000 48594000 39492000 540380 0 0 33192000 39349000 36718000 0 517480 0 29713000 33293000 30206000 0 0 0 37183000 40562000 36503000 0 0 0 22230 740 21528 413111;413112;413113;413114;413115;413116;413117;413118;413119;413120;413121;413122;413123;413124;413125;413126;413127;413128;413129;413130;413131;413132;413133;413134;413135;413136 253310;253311;253312;253313;253314;253315;253316;253317;253318;253319;253320;253321;253322 253320 12 VPQDYVTQSGPLR Unmodified 1458.7467 0.74669243 791 P0ADK0 yiaF Uncharacterized protein YiaF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.232 25.108 2 2.1114E-17 10849 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 210.08 199.7 754470000 26468000 21829000 22097000 6185900 5649100 6076200 83192000 77380000 81574000 32689000 29248000 28696000 33934000 38605000 44834000 4233200 2932900 2810800 58652000 56141000 50523000 12912000 14129000 13681000 22231 791 21529 413137;413138;413139;413140;413141;413142;413143;413144;413145;413146;413147;413148;413149;413150;413151;413152;413153;413154;413155;413156;413157;413158;413159;413160 253323;253324;253325;253326;253327;253328;253329;253330;253331;253332;253333;253334;253335 253333 12 VPQTEEELER Unmodified 1228.5935 0.59354583 799 P0ADQ2 yiiD Uncharacterized protein YiiD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.716 16.531 2 8.5488E-05 5679 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 149.72 144.76 281100000 41182000 40704000 35936000 0 0 0 18190000 20907000 20305000 0 0 0 18292000 17068000 13585000 0 0 0 20457000 17117000 17352000 0 0 0 22232 799 21530 413161;413162;413163;413164;413165;413166;413167;413168;413169;413170;413171;413172 253336;253337;253338;253339;253340;253341;253342;253343;253344;253345;253346;253347 253343 9 VPSAIHVTPEAYDGGLLAK Unmodified 1937.0258 0.025827405 785 P0ADF6 edd Phosphogluconate dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 2 2 2 2 2 2 35.381 33.808 2;3 4.2617E-29 16622 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 244.71 223.46 1596600000 14851000 13093000 11931000 0 0 0 216030000 210080000 183650000 0 1663700 0 129920000 155960000 141910000 0 0 0 170850000 167440000 179270000 0 0 0 22233 785 21531 413173;413174;413175;413176;413177;413178;413179;413180;413181;413182;413183;413184;413185;413186;413187;413188;413189;413190;413191;413192;413193;413194 253348;253349;253350;253351;253352;253353;253354;253355;253356;253357;253358;253359;253360;253361 253348 14 VPSEQLTLLVR Unmodified 1253.7343 0.73433683 388 P0A817 metK S-adenosylmethionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 38.581 36.899 2;3 2.8418E-07 18229 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 186.78 176.55 3759500000 292890000 269550000 251150000 6476000 4621100 4893700 457460000 456140000 479570000 21885000 24397000 27138000 208810000 210740000 187540000 2379800 1759100 1550600 297400000 294180000 259010000 0 0 0 22234 388 21532 413195;413196;413197;413198;413199;413200;413201;413202;413203;413204;413205;413206;413207;413208;413209;413210;413211;413212;413213;413214;413215;413216;413217;413218;413219;413220;413221;413222;413223;413224;413225;413226;413227;413228;413229;413230;413231 253362;253363;253364;253365;253366;253367;253368;253369;253370;253371;253372;253373;253374;253375;253376;253377;253378;253379;253380;253381;253382;253383;253384;253385;253386;253387;253388;253389;253390;253391;253392 253367 31 VPSHADFQAQQGLADKPLIDK Unmodified 2277.1753 0.17534519 1424 P33590 nikA Nickel-binding periplasmic protein yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 2 2 2 2 2 2 24.732 23.699 3;4 5.2368E-06 10024 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 88.755 83.227 745740000 0 7411900 6911800 0 0 0 85235000 72993000 74378000 0 0 0 82392000 79191000 71085000 0 0 0 93100000 79530000 93514000 0 0 0 22235 1424 21533 413232;413233;413234;413235;413236;413237;413238;413239;413240;413241;413242;413243;413244;413245;413246;413247;413248;413249;413250;413251 253393;253394;253395;253396;253397;253398;253399 253397 7 VPTCMIFIPSINGISHNPAER Unmodified 2352.1719 0.17185649 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 46.714 45.074 3 1.21E-10 16115 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 102.98 100.99 60257000 0 0 0 14963000 11966000 15756000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4340400 5424300 7807200 22236 1904 21534 413252;413253;413254;413255;413256;413257 253400;253401;253402 253401 3 VPTGATTQDAEVDDAK Unmodified 1616.753 0.7529596 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 2 2 2 14.973 15.796 2;3 6.2017E-31 5289 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 286.34 285.73 3336000000 0 0 0 400100 0 298440 426830000 456460000 405540000 0 0 1269200 414970000 391230000 452300000 0 0 0 275150000 269750000 241790000 0 0 0 22237 40 21535 413258;413259;413260;413261;413262;413263;413264;413265;413266;413267;413268;413269;413270;413271;413272;413273;413274;413275;413276;413277;413278 253403;253404;253405;253406;253407;253408;253409;253410;253411;253412;253413;253414;253415;253416;253417 253412 15 VPTNEPVIIK Unmodified 1108.6492 0.64921022 1208 P23522 garL 5-keto-4-deoxy-D-glucarate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.495 22.774 2 8.2936E-06 10202 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 154.81 140.14 413490000 37121000 33281000 30973000 0 0 0 50043000 44805000 45266000 0 0 0 29119000 27307000 23388000 0 0 0 29312000 33764000 29114000 0 0 0 22238 1208 21536 413279;413280;413281;413282;413283;413284;413285;413286;413287;413288;413289;413290 253418;253419;253420;253421;253422;253423;253424;253425;253426;253427;253428;253429 253418 12 VPTPNVSVVDLTVR Unmodified 1494.8406 0.84059282 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 2 2 3 3 3 2 2 2 4 4 4 1 1 1 4 4 4 2 2 1 41.913 40.228 2;3 1.024E-10 19277 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 179.35 179.35 54620000000 3752500000 3637200000 3515400000 23433000 21474000 22592000 5794000000 5450600000 5235800000 23634000 25760000 20224000 3888200000 3889800000 3720900000 15972000 7355500 6051500 5202500000 5362900000 4966200000 14438000 12359000 10817000 22239 504 21537 413291;413292;413293;413294;413295;413296;413297;413298;413299;413300;413301;413302;413303;413304;413305;413306;413307;413308;413309;413310;413311;413312;413313;413314;413315;413316;413317;413318;413319;413320;413321;413322;413323;413324;413325;413326;413327;413328;413329;413330;413331;413332;413333;413334;413335;413336;413337;413338;413339;413340;413341;413342;413343;413344;413345;413346;413347;413348;413349;413350;413351 253430;253431;253432;253433;253434;253435;253436;253437;253438;253439;253440;253441;253442;253443;253444;253445;253446;253447;253448;253449;253450;253451;253452;253453;253454;253455;253456;253457;253458;253459;253460;253461;253462;253463;253464;253465;253466;253467;253468;253469;253470;253471 253462 39 VPTVDTSNPFAAK Unmodified 1345.6878 0.68778057 894 P0AEX5 prkB Probable phosphoribulokinase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.173 29.645 2 2.5696E-05 14134 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 136.49 128.66 109160000 0 0 3325700 0 863520 470240 19039000 18700000 18547000 0 0 0 0 12791000 0 0 0 0 18651000 16358000 0 0 0 417070 22240 894 21538 413352;413353;413354;413355;413356;413357;413358;413359;413360;413361 253472;253473 253472 2 VPVEHTLDAVNIADR Unmodified 1647.858 0.8580338 110 P05458 ptrA Protease 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 28.215 27.126 3 2.2407E-06 11979 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 104.09 92.175 187940000 28612000 25244000 26115000 0 0 0 0 0 0 0 0 0 22346000 20456000 0 0 0 0 31804000 0 33365000 0 0 0 22241 110 21539 413362;413363;413364;413365;413366;413367;413368 253474;253475 253475 2 VPVFAGDSEDDITAR Unmodified 1590.7526 0.75256567 175 P08179 purN Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.532 31.193 2 7.2121E-12 14079 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 174.84 172.33 260200000 31049000 28260000 31081000 0 0 0 16731000 15566000 18756000 0 0 0 16310000 17212000 15391000 0 0 0 23560000 22592000 23699000 0 0 0 22242 175 21540 413369;413370;413371;413372;413373;413374;413375;413376;413377;413378;413379;413380 253476;253477;253478;253479;253480;253481;253482;253483;253484 253484 9 VPVIYAPAK Unmodified 956.5695 0.56950333 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 24.727 23.512 2 0.00063723 8474 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 105.12 100.43 54923000 0 0 0 6586200 7129900 7087100 0 0 0 7450700 6733900 6488800 0 0 0 0 0 0 0 0 0 4873600 4097800 4474800 22243 1115 21541 413381;413382;413383;413384;413385;413386;413387;413388;413389 253485;253486;253487;253488;253489 253486 5 VPVLIGTGGTNAR Unmodified 1253.7092 0.70918471 1761 P75682 yagE Probable 2-keto-3-deoxy-galactonate aldolase YagE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 26.395 25.421 2 7.7973E-07 11478 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.16 133.01 87312000 31564000 24622000 30310000 0 353760 462170 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22244 1761 21542 413390;413391;413392;413393;413394 253490;253491;253492 253490 3 VPVMIHR Unmodified 850.48473 0.48472785 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 13.925 14.829 2 0.15848 4508 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 43.461 43.461 20306000 0 1357100 0 0 0 0 0 0 2843500 0 0 0 2510200 2652300 1537200 0 0 0 2419400 3493800 3492800 0 0 0 22245 445 21543 413395;413396;413397;413398;413399;413400;413401;413402 253493 253493 1 VPVTLFTK Unmodified 903.54295 0.54295423 1332 P29680 hemE Uroporphyrinogen decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.155 29.799 2 0.0033979 14070 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 92.47 80.313 143210000 10847000 8764300 9139600 0 0 0 14202000 11949000 11519000 0 0 0 11254000 11361000 11250000 0 0 0 14229000 14822000 13878000 0 0 0 22246 1332 21544 413403;413404;413405;413406;413407;413408;413409;413410;413411;413412;413413;413414 253494;253495;253496;253497;253498;253499;253500;253501;253502 253495 9 VPWQALTNK Unmodified 1055.5764 0.57637963 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.177 27.921 2 2.667E-05 12841 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 155.03 144.6 271980000 27685000 21589000 21360000 0 0 0 28330000 29383000 29704000 0 0 0 13912000 13863000 13120000 0 0 0 23933000 27395000 21706000 0 0 0 22247 1155 21545 413415;413416;413417;413418;413419;413420;413421;413422;413423;413424;413425;413426 253503;253504;253505;253506;253507;253508;253509;253510;253511;253512;253513 253508 11 VPYEVGR Unmodified 818.42865 0.42865276 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.249 15.9 2 0.00082076 5026 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 143.97 130.77 487100000 64593000 64925000 73334000 0 3029700 0 4827100 10147000 0 3595400 3123200 2869400 24971000 23232000 25565000 0 0 0 63315000 59063000 59007000 0 1500000 0 22248 1302 21546 413427;413428;413429;413430;413431;413432;413433;413434;413435;413436;413437;413438;413439;413440;413441;413442 253514;253515 253514 2 VPYGAVLAK Unmodified 916.5382 0.53820321 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.599 22.83 2 0.0012483 7220 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 89.369 68.67 15867000000 366630000 374670000 321820000 0 0 0 0 0 0 1334400000 1207700000 1193100000 0 0 0 2806200000 2000700000 2109600000 0 0 0 1563000000 1462400000 1126300000 22249 458 21547 413443;413444;413445;413446;413447;413448;413449;413450;413451;413452;413453;413454 253516;253517;253518;253519;253520;253521;253522;253523;253524;253525;253526;253527;253528 253516 13 VPYGTLLCVSDKPLHGEIK Unmodified 2125.1242 0.12416124 828 P0AE12 amn AMP nucleosidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 32.924 31.484 3;4 1.0801E-17 14751 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 129.12 124.57 1827100000 182830000 147900000 151750000 0 0 0 145370000 160880000 139910000 0 0 0 121990000 120320000 115820000 0 0 0 184950000 171160000 184260000 0 0 0 22250 828 21548 413455;413456;413457;413458;413459;413460;413461;413462;413463;413464;413465;413466;413467;413468;413469;413470;413471;413472;413473;413474;413475;413476;413477;413478 253529;253530;253531;253532;253533;253534;253535;253536;253537;253538;253539;253540;253541;253542;253543;253544;253545;253546;253547;253548;253549;253550;253551;253552 253545 24 VPYIAQVMNDAPAVASTDYMK Unmodified 2283.0915 0.091540484 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 3 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 3 50.384 49.138 2;3;4 2.5262E-52 17823 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 306.54 306.54 28152000000 465100000 390720000 321900000 3676600000 3744900000 3700800000 402070000 438800000 389190000 305580000 273220000 311210000 459870000 403670000 400880000 67392000 56719000 60786000 649950000 643410000 638750000 3604700000 3298600000 3447100000 22251 939 21549 413479;413480;413481;413482;413483;413484;413485;413486;413487;413488;413489;413490;413491;413492;413493;413494;413495;413496;413497;413498;413499;413500;413501;413502;413503;413504;413505;413506;413507;413508;413509;413510;413511;413512;413513;413514;413515;413516;413517;413518;413519;413520;413521;413522;413523;413524;413525;413526;413527;413528;413529;413530;413531;413532 253553;253554;253555;253556;253557;253558;253559;253560;253561;253562;253563;253564;253565;253566;253567;253568;253569;253570;253571;253572;253573;253574;253575;253576;253577;253578;253579;253580;253581;253582;253583;253584;253585;253586;253587;253588;253589;253590;253591;253592;253593;253594;253595;253596;253597;253598;253599;253600;253601;253602;253603;253604;253605;253606;253607;253608;253609;253610;253611;253612;253613;253614;253615;253616 253592 64 VPYIAQVMNDAPAVASTDYMK Oxidation (M) 2299.0865 0.086455106 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 1 2 17 17 19 1 3 3 6 7 5 1 1 4 5 5 15 16 14 45.66 43.942 2;3 5.244E-36 14337 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 225.55 224.47 1976900000 17099000 3056900 7078200 363960000 327190000 344600000 3683100 12812000 19527000 22027000 21617000 11670000 3927200 2682000 0 0 0 0 20211000 26576000 23916000 289580000 235820000 219910000 22252 939 21549 413533;413534;413535;413536;413537;413538;413539;413540;413541;413542;413543;413544;413545;413546;413547;413548;413549;413550;413551;413552;413553;413554;413555;413556;413557;413558;413559;413560;413561;413562;413563;413564;413565;413566;413567;413568;413569;413570;413571;413572;413573;413574;413575;413576;413577;413578;413579;413580;413581;413582;413583;413584;413585;413586;413587;413588;413589;413590;413591;413592;413593;413594;413595;413596;413597;413598;413599;413600;413601;413602;413603;413604;413605;413606;413607;413608;413609;413610;413611;413612;413613;413614;413615;413616;413617;413618;413619;413620;413621;413622;413623;413624;413625;413626;413627;413628;413629;413630;413631;413632;413633;413634;413635;413636;413637;413638;413639;413640;413641;413642;413643;413644;413645;413646;413647;413648;413649;413650;413651;413652;413653;413654;413655;413656;413657;413658;413659;413660;413661;413662;413663;413664;413665;413666;413667;413668;413669;413670;413671;413672;413673;413674;413675;413676;413677 253617;253618;253619;253620;253621;253622;253623;253624;253625;253626;253627;253628;253629;253630;253631;253632;253633;253634;253635;253636;253637;253638;253639;253640;253641;253642;253643;253644;253645;253646;253647;253648;253649;253650;253651;253652;253653;253654;253655;253656;253657;253658;253659;253660;253661;253662;253663;253664;253665;253666;253667;253668;253669;253670;253671;253672;253673;253674;253675;253676;253677;253678;253679;253680;253681;253682;253683;253684;253685;253686;253687;253688;253689;253690;253691;253692;253693;253694;253695;253696;253697;253698;253699;253700;253701;253702;253703;253704;253705;253706;253707;253708;253709;253710;253711;253712;253713;253714;253715;253716;253717 253669 445;446 92 VPYIAQVMNDAPAVASTDYMK 2 Oxidation (M) 2315.0814 0.081369728 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 2 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 37.844 35.977 3 0.00022818 12701 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 66.325 66.325 78737000 0 0 0 13964000 17193000 15267000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8760200 12505000 11048000 22253 939 21549 413678;413679;413680;413681;413682;413683;413684;413685;413686;413687;413688;413689 253718;253719;253720;253721;253722;253723;253724;253725;253726;253727;253728 253724 445;446 11 VPYMLVCGDK Unmodified 1180.5621 0.56205147 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 30.941 29.635 2 0.074305 13842 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 43.282 38.946 123560000 11362000 13381000 9863200 0 0 0 0 13708000 12020000 0 0 0 8097000 9550300 9013700 0 0 0 12338000 13239000 10985000 0 0 0 22254 445 21550 413690;413691;413692;413693;413694;413695;413696;413697;413698;413699;413700 253729;253730 253730 2 VPYNFLEVNMQGIQVWHLR Unmodified 2342.1994 0.19939187 1462 P37194 slp Outer membrane protein slp yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 53.803 52.317 3 0.0053845 21314 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 45.094 37.647 85672000 3695000 4360700 0 0 2096100 0 10753000 11438000 7257300 15386000 14879000 13210000 0 0 0 0 0 0 0 0 2597100 0 0 0 22255 1462 21551 413701;413702;413703;413704;413705;413706;413707;413708;413709;413710 253731 253731 1 VPYSFMVPIFGGR Unmodified 1468.7537 0.75369207 1061 P10903;P37758 narK;narU Nitrate/nitrite transporter NarK;Nitrate/nitrite transporter NarU yes no 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.52 53.069 2 0.033903 25244 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 53.683 53.683 46866000 0 4523800 4055600 0 0 0 0 2607000 3133500 2605600 0 3621100 3372000 3676700 5099900 0 0 0 6396500 4856700 2917500 0 0 0 22256 1061 21552 413711;413712;413713;413714;413715;413716;413717;413718;413719;413720;413721;413722 253732;253733 253732 0 VPYVGVDK Unmodified 875.47527 0.4752686 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 19.038 19.61 1;2 0.0033979 7377 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.47 79.263 413700000 119180000 111360000 99487000 0 0 0 8135700 8132500 7842300 0 0 0 7430000 6716900 7602900 0 0 0 12823000 13182000 11805000 0 0 0 22257 852 21553 413723;413724;413725;413726;413727;413728;413729;413730;413731;413732;413733;413734;413735;413736;413737 253734;253735;253736;253737;253738;253739;253740;253741;253742;253743 253738 7 VPYVGVDKDNLAEFSK Unmodified 1779.9043 0.90431529 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 33.2 31.761 2;3 5.3602E-19 14903 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 251.85 242.9 8510400000 2328200000 2229400000 2042400000 0 0 0 210960000 197550000 180360000 0 0 0 162920000 171440000 153350000 0 0 0 255180000 297040000 281670000 0 0 0 22258 852 21554 413738;413739;413740;413741;413742;413743;413744;413745;413746;413747;413748;413749;413750;413751;413752;413753;413754;413755;413756;413757;413758;413759;413760;413761 253744;253745;253746;253747;253748;253749;253750;253751;253752;253753;253754;253755;253756;253757;253758;253759;253760;253761;253762;253763 253759 19 VQAHVIDKY Unmodified 1071.5713 0.57129425 1617 P60293 mukF Chromosome partition protein MukF yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 13.277 14.143 2 0.0024888 4354 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 86.744 84.555 106220000 8588400 6739500 7103600 0 0 0 6278400 9591400 7512900 0 0 0 9823900 9691500 7860400 0 0 0 17238000 9198000 6596500 0 0 0 22259 1617 21555 413762;413763;413764;413765;413766;413767;413768;413769;413770;413771;413772;413773 253764;253765;253766;253767;253768 253764 5 VQALADAAR Unmodified 913.49813 0.49812931 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.036 14.634 2 8.9344E-06 4562 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 168.23 125.11 6911000000 723870000 754840000 598320000 60175000 48924000 58320000 346620000 348560000 335200000 63404000 64211000 76381000 421110000 404610000 383100000 59398000 40674000 43667000 605550000 669720000 571290000 72419000 83344000 77324000 22260 1031 21556 413774;413775;413776;413777;413778;413779;413780;413781;413782;413783;413784;413785;413786;413787;413788;413789;413790;413791;413792;413793;413794;413795;413796;413797 253769;253770;253771;253772;253773;253774;253775;253776;253777;253778;253779;253780;253781;253782;253783;253784;253785;253786;253787;253788;253789;253790;253791;253792 253783 24 VQALEEANNDLENK Unmodified 1585.7584 0.75837933 16 CON__P35527 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 22.748 21.921 2;3 1.0203E-10 7182 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 194.17 192.84 923840000 0 0 0 5167600 4714100 6538100 0 0 0 243380000 223790000 232230000 0 0 0 0 0 0 0 0 0 71681000 73250000 63090000 + 22261 16 21557 413798;413799;413800;413801;413802;413803;413804;413805;413806;413807;413808;413809;413810;413811;413812 253793;253794;253795;253796;253797;253798;253799;253800;253801;253802;253803;253804;253805;253806;253807 253803 15 VQALEEANNDLENKIQDWYDK Unmodified 2534.1925 0.1925114 16 CON__P35527 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 44.196 41.894 3 1.9418E-10 17092 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 123.43 118.89 38811000 0 0 0 0 0 0 0 0 0 11538000 11119000 9619900 0 0 0 0 0 0 0 0 0 3445400 0 3088500 + 22262 16 21558 413813;413814;413815;413816;413817 253808;253809;253810;253811 253808 4 VQALEEANNDLENKIQDWYDKK Unmodified 2662.2875 0.28747441 16 CON__P35527 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 40.84 38.675 3;4 9.868E-05 15344 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 78.418 75.656 117210000 0 0 0 0 0 0 0 0 0 33099000 27756000 29894000 0 0 0 3602400 0 0 0 0 0 7392300 6820800 8645900 + 22263 16 21559 413818;413819;413820;413821;413822;413823;413824;413825;413826;413827 253812;253813;253814;253815;253816;253817;253818 253816 7 VQALLDQLR Unmodified 1054.6135 0.61349341 323 P0A7A5 pcm Protein-L-isoaspartate O-methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 32.56 31.183 2 0.0039974 14037 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 79.596 44.301 95628000 9437500 6745700 8074200 0 0 0 16139000 11080000 10824000 0 0 0 0 0 4828100 0 0 0 10878000 11420000 6201600 0 0 0 22264 323 21560 413828;413829;413830;413831;413832;413833;413834;413835;413836;413837 253819;253820;253821;253822;253823;253824;253825;253826 253826 8 VQAQIQGDEIR Unmodified 1255.6521 0.65206377 423 P0A8E7 yajQ UPF0234 protein YajQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 18.639 19.21 2 2.4299E-26 6943 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 251.98 171.54 4375400000 376430000 348470000 329450000 0 1060000 1069100 547990000 558870000 523920000 0 0 0 243210000 247800000 233120000 0 0 0 332890000 324980000 306130000 0 0 0 22265 423 21561 413838;413839;413840;413841;413842;413843;413844;413845;413846;413847;413848;413849;413850;413851;413852;413853;413854;413855;413856;413857;413858;413859;413860;413861;413862;413863 253827;253828;253829;253830;253831;253832;253833;253834;253835;253836;253837;253838;253839;253840;253841;253842;253843;253844;253845;253846;253847 253830 19 VQAVDMTELR Unmodified 1160.586 0.58595803 1758 P69922 fucI L-fucose isomerase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.776 26.628 2 0.0018588 11594 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 82.287 42.019 205810000 24799000 30023000 25667000 0 0 0 17648000 14155000 16393000 0 0 0 12001000 10777000 11146000 0 0 0 11776000 13116000 18309000 0 0 0 22266 1758 21562 413864;413865;413866;413867;413868;413869;413870;413871;413872;413873;413874;413875 253848 253848 1 VQAVSTELGGER Unmodified 1244.6361 0.63607935 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 3 3 2 1 1 1 3 2 2 1 1 1 2 2 2 18.674 18.89 2;3 6.044E-18 7129 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 224.64 173.58 7676000000 169440000 156640000 131850000 2487400 1971900 2671000 104520000 103940000 86088000 577120000 523690000 420840000 114910000 112410000 94441000 749850000 683930000 685480000 138830000 134440000 139710000 869790000 834620000 836270000 22267 935 21563 413876;413877;413878;413879;413880;413881;413882;413883;413884;413885;413886;413887;413888;413889;413890;413891;413892;413893;413894;413895;413896;413897;413898;413899;413900;413901;413902;413903;413904;413905;413906;413907;413908;413909;413910;413911 253849;253850;253851;253852;253853;253854;253855;253856;253857;253858;253859;253860;253861;253862;253863;253864;253865;253866;253867;253868;253869;253870;253871;253872;253873;253874;253875 253860 27 VQAYDGPIYIADAALFVK Unmodified 1953.0248 0.024764773 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 54.499 53.093 2 2.7128E-09 26154 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.74 106.88 348160000 116910000 121390000 109860000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22268 1816 21564 413912;413913;413914 253876;253877;253878 253877 3 VQDAIDMVGELMR Oxidation (M) 1491.7061 0.70614953 1990 yes yes 0 1 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.588 50.34 2 0.032493 24635 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 45.368 34.204 1422400000 127240000 122150000 119430000 0 0 0 94907000 92902000 91800000 0 0 0 119470000 112690000 122830000 0 0 0 137740000 150850000 130430000 0 0 0 + 22269 1990 21565 413915;413916;413917;413918;413919;413920;413921;413922;413923;413924;413925;413926 253879 253879 617;618 0 VQDLQVVGTCGK Unmodified 1302.6602 0.66018561 1164 P20083 parE DNA topoisomerase 4 subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.854 21.186 2 1.0147E-11 8400 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 187.55 162.63 223210000 18821000 17276000 14848000 0 0 0 17306000 19068000 20981000 0 0 0 18296000 18593000 16196000 0 0 0 23872000 19539000 18416000 0 0 0 22270 1164 21566 413927;413928;413929;413930;413931;413932;413933;413934;413935;413936;413937;413938 253880;253881;253882;253883;253884;253885;253886 253884 7 VQDQNQIPELNVYQCGTYQMHSLQEAQDIAR Unmodified 3675.7046 0.70459298 1577 P45578 luxS S-ribosylhomocysteine lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 44.877 43.301 3;4 1.1721E-54 21128 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 230.95 229.89 2132800000 263350000 223770000 239120000 4283100 3779300 4429400 214340000 204760000 166030000 0 2094400 2365100 131300000 106330000 111800000 0 0 0 142900000 163720000 148410000 0 0 0 22271 1577 21567 413939;413940;413941;413942;413943;413944;413945;413946;413947;413948;413949;413950;413951;413952;413953;413954;413955;413956;413957;413958;413959;413960;413961;413962;413963;413964;413965;413966;413967;413968;413969;413970 253887;253888;253889;253890;253891;253892;253893;253894;253895;253896;253897;253898;253899;253900;253901;253902;253903;253904;253905;253906;253907;253908;253909;253910;253911;253912 253895 26 VQDSQLMK Unmodified 947.47462 0.47461667 963 P0AFU8 ribC Riboflavin synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.257 14.106 2 0.00026 4048 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 125.25 62.535 996880000 105620000 97329000 98500000 0 0 0 140870000 131600000 109600000 0 0 0 86721000 0 80141000 0 0 0 0 74873000 71620000 0 0 0 22272 963 21568 413971;413972;413973;413974;413975;413976;413977;413978;413979;413980;413981;413982 253913;253914;253915;253916;253917;253918;253919;253920;253921;253922;253923;253924 253923 12 VQDTHELFSAVETLSHMR Unmodified 2099.0106 0.010588046 1878 P76594 pka Protein lysine acetyltransferase Pka yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 44.586 43.116 4 0.00040339 21136 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.47 60.468 69603000 15521000 11974000 8820200 0 0 0 0 5258700 4318600 0 0 0 4122900 2967700 2537800 0 0 0 4426000 3557700 6098400 0 0 0 22273 1878 21569 413983;413984;413985;413986;413987;413988;413989;413990;413991;413992;413993 253925;253926;253927 253925 3 VQEHLNK Unmodified 866.46102 0.46101552 783 P0ADE6 ygaU Uncharacterized protein YgaU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 3 1 3 1 1 6.742 7.5445 2 0.0010319 1940 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 138.37 99.346 1067100000 225450000 228970000 250490000 31178000 35368000 35554000 70937000 69877000 2593300 24085000 25942000 21606000 16669000 10255000 14703000 0 0 0 1637500 0 1804900 0 0 0 22274 783 21570 413994;413995;413996;413997;413998;413999;414000;414001;414002;414003;414004;414005;414006;414007;414008;414009;414010;414011;414012;414013;414014 253928;253929;253930;253931;253932;253933;253934;253935;253936;253937;253938;253939;253940;253941 253929 13 VQELAEK Unmodified 815.43888 0.43888309 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.394 12.226 2 0.0015598 3161 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.84 63.067 2087900000 161120000 196720000 173190000 0 0 0 207670000 179860000 178190000 0 0 0 170780000 149130000 152070000 0 0 0 192530000 168990000 157640000 0 0 0 22275 1120 21571 414015;414016;414017;414018;414019;414020;414021;414022;414023;414024;414025;414026 253942;253943;253944;253945;253946;253947;253948;253949;253950;253951 253944 10 VQENLIGHLVTQK Unmodified 1477.8253 0.8252771 459 P0A8U0 syd Protein Syd yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 28.22 26.992 2 0.0034155 12422 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 64.945 58.704 68690000 9192900 7096300 6585600 0 0 0 5297200 5384700 7091500 0 0 0 4098800 3785800 4840700 0 0 0 5376700 5475900 4463900 0 0 0 22276 459 21572 414027;414028;414029;414030;414031;414032;414033;414034;414035;414036;414037;414038 253952;253953 253952 2 VQEPLAANAPPQLR Unmodified 1502.8205 0.82052608 1260 P25535 ubiI 2-octaprenylphenol hydroxylase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.064 27.596 2 9.2223E-07 12757 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.09 110.12 122940000 6418600 7389200 6614300 1569700 1203200 875490 10216000 11434000 10577000 2448500 2369800 2125000 8828800 8133800 7075500 0 0 0 12745000 10620000 11118000 0 0 1175600 22277 1260 21573 414039;414040;414041;414042;414043;414044;414045;414046;414047;414048;414049;414050;414051;414052;414053;414054;414055;414056;414057 253954;253955;253956;253957;253958;253959;253960;253961;253962;253963;253964;253965;253966;253967;253968;253969 253960 8 VQEQENR Unmodified 901.42536 0.42535829 1623 P60560 guaC GMP reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 4.6323 5.5032 2 1.9538E-12 996 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 181.2 109.25 181750000 0 0 0 0 0 0 0 54368000 52879000 0 0 0 0 0 0 0 0 0 74499000 0 0 0 0 0 22278 1623 21574 414058;414059;414060;414061;414062;414063;414064 253970;253971;253972;253973;253974;253975;253976 253970 7 VQEQLDHHNLWQLENR Unmodified 2058.0031 0.0031349031 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 26.065 24.888 3;4 1.9966E-10 11536 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 144.33 137.02 750500000 45468000 53375000 40149000 866450 1028000 932680 59805000 63348000 63627000 1754400 1692300 2045500 58763000 50475000 51948000 0 0 0 88987000 86133000 80107000 0 0 0 22279 1564 21575 414065;414066;414067;414068;414069;414070;414071;414072;414073;414074;414075;414076;414077;414078;414079;414080;414081;414082;414083;414084;414085;414086;414087;414088;414089;414090;414091;414092;414093;414094 253977;253978;253979;253980;253981;253982;253983;253984;253985;253986;253987;253988;253989;253990;253991;253992;253993;253994 253977 18 VQETIAIIR Unmodified 1041.6182 0.61824444 198 P09053 avtA Valine--pyruvate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.485 27.17 2 6.8025E-05 12849 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 144.38 67.317 252240000 39039000 37463000 34983000 0 0 0 13260000 13739000 12284000 0 0 0 10064000 9595000 12165000 0 0 0 19900000 24795000 22212000 1852000 890520 0 22280 198 21576 414095;414096;414097;414098;414099;414100;414101;414102;414103;414104;414105;414106;414107;414108 253995;253996;253997;253998;253999;254000;254001 253996 6 VQFGDYQANGMMAVAK Unmodified 1728.7964 0.79636152 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 37.616 36.065 2 5.6892E-10 17477 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 140.39 121.15 106960000 0 0 0 0 0 0 0 0 0 0 0 0 16626000 12818000 13607000 0 0 0 21872000 21012000 21025000 0 0 0 22281 1073 21577 414109;414110;414111;414112;414113;414114 254002;254003;254004 254002 3 VQFIDEPVK Unmodified 1073.5757 0.57571092 617 P0AAX8 ybiS Probable L,D-transpeptidase YbiS yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.829 26.615 2 0.0011031 12524 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 103.56 88.894 1724600000 184280000 166130000 123860000 696630 864900 676670 123120000 125230000 115210000 0 0 0 118170000 128230000 116900000 0 0 0 169840000 176410000 174640000 0 397050 0 22282 617 21578 414115;414116;414117;414118;414119;414120;414121;414122;414123;414124;414125;414126;414127;414128;414129;414130 254005;254006;254007;254008;254009;254010 254005 6 VQFLEQQNK Unmodified 1132.5877 0.58767259 15 CON__P19013 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 26.498 25.461 2 0.001367 11263 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.942 70.68 1270600000 180800000 165340000 130710000 0 0 0 243070000 224330000 213490000 0 0 0 30850000 28400000 29889000 0 0 0 0 12566000 11116000 0 0 0 + 22283 15 21579 414131;414132;414133;414134;414135;414136;414137;414138;414139;414140;414141 254011;254012;254013;254014;254015;254016;254017;254018;254019 254017 9 VQFSSAIGPYK Unmodified 1195.6237 0.62372375 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.466 28.111 2 5.126E-05 12984 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.94 128.64 990430000 259150000 252290000 238390000 813620 698470 887970 33862000 35679000 37459000 0 1255400 0 17059000 16734000 16226000 0 0 0 26175000 25189000 28555000 0 0 0 22284 26 21580 414142;414143;414144;414145;414146;414147;414148;414149;414150;414151;414152;414153;414154;414155;414156;414157 254020;254021;254022;254023;254024;254025;254026;254027;254028;254029;254030;254031 254026 9 VQGDVAAWFGSLPVVPEGCK Unmodified 2115.0459 0.04591092 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 54.238 52.832 2;3 2.4989E-18 26171 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 174.39 164.27 432360000 149350000 134340000 148670000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22285 1816 21581 414158;414159;414160;414161;414162;414163 254032;254033;254034;254035 254032 4 VQGEIPENADLK Unmodified 1311.667 0.66704513 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.409 21.485 2 1.8156E-06 8658 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 145.99 137.94 1560300000 118510000 123030000 86440000 5005000 5650800 4439900 154890000 149570000 136230000 5514300 3938400 6433500 95621000 90604000 86593000 2051100 1603000 1302100 149720000 170050000 149980000 4496600 4357900 4294100 22286 292 21582 414164;414165;414166;414167;414168;414169;414170;414171;414172;414173;414174;414175;414176;414177;414178;414179;414180;414181;414182;414183;414184;414185;414186;414187 254036;254037;254038;254039;254040;254041;254042;254043;254044;254045;254046;254047;254048 254043 13 VQGKDEVILTLNK Unmodified 1455.8297 0.82969378 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 5 4 5 4 3 4 33 37 38 2 2 2 47 54 59 2 2 3 37 39 46 36.261 35.093 2;3 9.7488E-24 10951 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 253.76 222.34 58242000000 57045000 58189000 143410000 62367000 54398000 47609000 163610000 164900000 154780000 3489100000 3253200000 3429200000 156000000 144430000 138740000 12806000000 9258400000 9919200000 194550000 190590000 195730000 4522100000 4781000000 4857400000 22287 383 21583 414188;414189;414190;414191;414192;414193;414194;414195;414196;414197;414198;414199;414200;414201;414202;414203;414204;414205;414206;414207;414208;414209;414210;414211;414212;414213;414214;414215;414216;414217;414218;414219;414220;414221;414222;414223;414224;414225;414226;414227;414228;414229;414230;414231;414232;414233;414234;414235;414236;414237;414238;414239;414240;414241;414242;414243;414244;414245;414246;414247;414248;414249;414250;414251;414252;414253;414254;414255;414256;414257;414258;414259;414260;414261;414262;414263;414264;414265;414266;414267;414268;414269;414270;414271;414272;414273;414274;414275;414276;414277;414278;414279;414280;414281;414282;414283;414284;414285;414286;414287;414288;414289;414290;414291;414292;414293;414294;414295;414296;414297;414298;414299;414300;414301;414302;414303;414304;414305;414306;414307;414308;414309;414310;414311;414312;414313;414314;414315;414316;414317;414318;414319;414320;414321;414322;414323;414324;414325;414326;414327;414328;414329;414330;414331;414332;414333;414334;414335;414336;414337;414338;414339;414340;414341;414342;414343;414344;414345;414346;414347;414348;414349;414350;414351;414352;414353;414354;414355;414356;414357;414358;414359;414360;414361;414362;414363;414364;414365;414366;414367;414368;414369;414370;414371;414372;414373;414374;414375;414376;414377;414378;414379;414380;414381;414382;414383;414384;414385;414386;414387;414388;414389;414390;414391;414392;414393;414394;414395;414396;414397;414398;414399;414400;414401;414402;414403;414404;414405;414406;414407;414408;414409;414410;414411;414412;414413;414414;414415;414416;414417;414418;414419;414420;414421;414422;414423;414424;414425;414426;414427;414428;414429;414430;414431;414432;414433;414434;414435;414436;414437;414438;414439;414440;414441;414442;414443;414444;414445;414446;414447;414448;414449;414450;414451;414452;414453;414454;414455;414456;414457;414458;414459;414460;414461;414462;414463;414464;414465;414466;414467;414468;414469;414470;414471;414472;414473;414474;414475;414476;414477;414478;414479;414480;414481;414482;414483;414484;414485;414486;414487;414488;414489;414490;414491;414492;414493;414494;414495;414496;414497;414498;414499;414500;414501;414502;414503;414504;414505;414506;414507;414508;414509;414510;414511;414512;414513;414514;414515;414516;414517;414518;414519;414520;414521;414522;414523;414524;414525;414526;414527;414528;414529;414530;414531;414532;414533;414534;414535;414536;414537;414538;414539;414540;414541;414542;414543;414544;414545;414546;414547;414548;414549;414550;414551;414552;414553;414554;414555;414556;414557;414558;414559;414560;414561;414562;414563;414564;414565;414566;414567;414568;414569;414570;414571;414572;414573;414574;414575;414576;414577;414578;414579;414580;414581;414582;414583;414584;414585;414586;414587;414588;414589;414590;414591;414592;414593;414594;414595;414596;414597;414598;414599;414600;414601;414602;414603;414604;414605;414606;414607;414608;414609;414610;414611;414612;414613;414614;414615;414616;414617;414618;414619 254049;254050;254051;254052;254053;254054;254055;254056;254057;254058;254059;254060;254061;254062;254063;254064;254065;254066;254067;254068;254069;254070;254071;254072;254073;254074;254075;254076;254077;254078;254079;254080;254081;254082;254083;254084;254085;254086;254087;254088;254089;254090;254091;254092;254093;254094;254095;254096;254097;254098;254099;254100;254101;254102;254103;254104;254105;254106;254107;254108;254109;254110;254111;254112;254113;254114;254115;254116;254117;254118;254119;254120;254121;254122;254123;254124;254125;254126;254127;254128;254129;254130;254131;254132;254133;254134;254135;254136;254137;254138;254139;254140;254141;254142;254143;254144;254145;254146;254147;254148;254149;254150;254151;254152;254153;254154;254155;254156;254157;254158;254159;254160;254161;254162;254163;254164;254165;254166;254167;254168;254169;254170;254171;254172;254173;254174;254175;254176;254177;254178;254179;254180;254181;254182;254183;254184;254185;254186;254187;254188;254189;254190;254191;254192;254193;254194;254195;254196;254197;254198;254199;254200;254201;254202;254203;254204;254205;254206;254207;254208;254209;254210;254211;254212;254213;254214;254215;254216;254217;254218;254219;254220;254221;254222;254223;254224;254225;254226;254227;254228;254229;254230;254231;254232;254233;254234;254235;254236;254237;254238;254239;254240;254241;254242;254243;254244;254245;254246;254247;254248;254249;254250;254251;254252;254253;254254;254255;254256;254257;254258;254259;254260;254261;254262;254263;254264;254265;254266;254267;254268;254269;254270;254271;254272;254273;254274;254275;254276;254277;254278;254279;254280;254281;254282;254283;254284;254285;254286;254287;254288;254289;254290;254291;254292;254293;254294;254295;254296;254297;254298;254299;254300;254301;254302;254303;254304;254305;254306;254307;254308;254309;254310;254311;254312;254313;254314;254315;254316;254317;254318;254319;254320;254321;254322;254323;254324;254325;254326;254327;254328;254329;254330;254331;254332;254333;254334;254335;254336;254337;254338;254339;254340;254341;254342;254343;254344;254345;254346;254347;254348;254349;254350;254351;254352;254353;254354;254355;254356;254357;254358;254359;254360;254361;254362;254363;254364;254365;254366;254367;254368;254369;254370;254371;254372;254373;254374;254375;254376;254377;254378;254379;254380;254381;254382;254383;254384;254385;254386;254387;254388;254389;254390;254391;254392;254393;254394;254395;254396;254397;254398;254399;254400;254401;254402;254403;254404;254405;254406;254407;254408;254409;254410;254411;254412;254413;254414;254415;254416;254417;254418;254419;254420;254421;254422;254423;254424;254425;254426;254427;254428;254429;254430;254431;254432;254433;254434;254435;254436;254437;254438;254439;254440;254441;254442;254443;254444;254445;254446;254447;254448;254449;254450;254451;254452;254453;254454;254455;254456;254457;254458;254459;254460;254461;254462;254463;254464;254465;254466;254467;254468;254469;254470;254471;254472;254473;254474;254475;254476;254477;254478;254479;254480;254481;254482;254483;254484;254485;254486;254487;254488;254489;254490;254491;254492;254493;254494;254495;254496;254497;254498;254499;254500;254501;254502;254503;254504;254505;254506;254507;254508;254509;254510;254511;254512;254513;254514;254515;254516;254517;254518;254519;254520;254521;254522;254523;254524;254525;254526;254527;254528;254529;254530;254531;254532;254533;254534;254535;254536;254537;254538;254539;254540;254541;254542;254543;254544;254545;254546;254547;254548;254549;254550;254551;254552;254553;254554;254555;254556;254557;254558 254079 500 VQGLLGR Unmodified 741.44972 0.44972255 88 P04335 frsA Esterase FrsA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 1 2 1 1 18.205 18.849 2 0.0019075 7025 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.68 72.836 188160000 29279000 29406000 0 0 0 0 18489000 19396000 0 0 0 0 17792000 16250000 13596000 0 0 0 17604000 15075000 11278000 0 0 0 22288 88 21584 414620;414621;414622;414623;414624;414625;414626;414627;414628;414629;414630;414631;414632 254559;254560;254561;254562;254563;254564;254565;254566;254567 254564 9 VQGLSEVFER Unmodified 1162.5982 0.59823728 1782 P75838 ycaO Ribosomal protein S12 methylthiotransferase accessory factor YcaO yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.033 31.399 2 2.9665E-05 14358 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 145.17 131.17 814370000 34124000 32467000 29776000 0 392370 527500 66536000 59609000 55503000 2235200 2576700 2227300 77674000 64742000 70809000 0 0 0 103760000 107040000 104370000 0 0 0 22289 1782 21585 414633;414634;414635;414636;414637;414638;414639;414640;414641;414642;414643;414644;414645;414646;414647;414648;414649 254568;254569;254570;254571;254572;254573;254574;254575 254573 8 VQGQELPESAHTASFAEIESAR Unmodified 2356.1295 0.12951721 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 30.386 28.953 3 4.663E-22 12947 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 139.83 138.8 692540000 74952000 56529000 52149000 0 0 0 37054000 33639000 41363000 0 1989500 0 53067000 53595000 55621000 0 0 0 73874000 81821000 76887000 0 0 0 22290 177 21586 414650;414651;414652;414653;414654;414655;414656;414657;414658;414659;414660;414661;414662 254576;254577;254578;254579;254580;254581;254582;254583;254584 254584 9 VQGVGFR Unmodified 761.41842 0.41842242 632 P0AB65;P30131 yccX;hypF Acylphosphatase;Carbamoyltransferase HypF yes no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.656 16.463 2 0.002549 5665 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.69 93.022 268870000 40190000 39588000 32437000 0 0 0 30312000 29074000 30642000 0 0 0 10816000 9024800 11614000 0 0 0 13366000 12040000 9761600 0 0 0 22291 632 21587 414663;414664;414665;414666;414667;414668;414669;414670;414671;414672;414673;414674 254585;254586;254587;254588;254589;254590;254591;254592;254593;254594;254595 254591 9 VQIEQLSPTFWR Unmodified 1502.7882 0.78816332 1655 P63183 kup Low affinity potassium transport system protein kup yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 47.382 45.649 2 0.008367 22106 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 71.889 67.59 59621000 0 0 0 0 0 0 9954500 0 0 2042500 1449600 1484000 10002000 0 0 0 0 0 4511000 27347000 0 1391300 1438700 0 22292 1655 21588 414675;414676;414677;414678;414679;414680;414681;414682;414683 254596;254597 254597 1 VQIGSNNIR Unmodified 999.54614 0.54614213 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 15.94 16.391 2 3.4027E-11 4563 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 208.86 157.29 7703300000 55372000 49248000 47405000 1257100 1189000 946300 68888000 86660000 78365000 2364700000 2196000000 2395500000 51238000 37871000 0 6775200 3838700 4811300 66947000 68894000 53464000 22433000 21681000 19808000 22293 497 21589 414684;414685;414686;414687;414688;414689;414690;414691;414692;414693;414694;414695;414696;414697;414698;414699;414700;414701;414702;414703;414704;414705;414706;414707;414708;414709;414710;414711 254598;254599;254600;254601;254602;254603;254604;254605;254606;254607;254608;254609;254610;254611;254612;254613;254614 254604 17 VQIPQNPLILVDGSSYLYR Unmodified 2174.1736 0.17355427 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 54.462 53.016 2 0.03981 26110 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 46.964 40.071 48666000 6225400 9249900 8370900 0 0 0 0 7366600 6758800 0 0 0 4202200 2544600 3948000 0 0 0 0 0 0 0 0 0 22294 37 21590 414712;414713;414714;414715;414716;414717;414718;414719 254615 254615 0 VQIQDAGHQVDDAEDAK Unmodified 1837.8442 0.84423422 1214 P23836 phoP Transcriptional regulatory protein PhoP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 16.338 17.055 2;3 1.8755E-40 6011 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 295.37 272.5 1436200000 149840000 150920000 144530000 0 0 0 108020000 138950000 127270000 0 0 0 115510000 80491000 92583000 1747500 1102500 1990900 120570000 110690000 91941000 0 0 0 22295 1214 21591 414720;414721;414722;414723;414724;414725;414726;414727;414728;414729;414730;414731;414732;414733;414734;414735;414736;414737;414738;414739;414740;414741;414742;414743;414744;414745;414746 254616;254617;254618;254619;254620;254621;254622;254623;254624;254625;254626;254627;254628;254629;254630;254631;254632;254633;254634;254635;254636;254637;254638 254628 23 VQKGDQK Unmodified 801.43447 0.43446642 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 7.6276 8.0225 2 0.0046728 1271 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 111.04 51.395 9032900 0 0 0 102710 0 100180 0 0 0 0 0 0 0 0 0 3201000 2625300 3003700 0 0 0 0 0 0 22296 1005 21592 414747;414748;414749;414750;414751 254639;254640;254641 254639 3 VQLGTTPVVR Unmodified 1068.6291 0.62914348 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.779 22.249 2 1.2159E-06 9564 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 167.33 117.91 1018800000 160050000 163640000 148380000 0 0 0 91698000 97830000 92376000 0 0 0 40834000 34698000 30760000 0 0 0 45654000 51561000 61334000 0 0 0 22297 1420 21593 414752;414753;414754;414755;414756;414757;414758;414759;414760;414761;414762;414763 254642;254643;254644;254645;254646;254647;254648;254649;254650;254651;254652;254653;254654 254645 13 VQLHWDEK Unmodified 1053.5243 0.52434406 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1 2 1 1 2 2 2 1 1 2 2 2 1 17.949 18.516 2;3 0.00011273 6858 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 158.61 121.91 2695400000 190740000 159060000 145160000 573600 674310 463780 212410000 313870000 198870000 1097400 0 0 222170000 214820000 190050000 0 2297900 2080800 276270000 318470000 245290000 0 1091900 0 22298 170 21594 414764;414765;414766;414767;414768;414769;414770;414771;414772;414773;414774;414775;414776;414777;414778;414779;414780;414781;414782;414783;414784;414785;414786;414787;414788;414789;414790;414791;414792 254655;254656;254657;254658;254659;254660;254661;254662;254663;254664;254665;254666;254667;254668;254669;254670;254671;254672;254673;254674;254675 254659 20 VQLLEGEVTPLK Unmodified 1324.7602 0.76021723 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 36.848 35.227 2 0.024214 16867 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 57.785 54.856 67457000 6104600 8460200 6517300 0 0 0 6946500 0 4345100 0 0 0 6383200 4817900 5044200 0 0 0 6632700 5642000 6563500 0 0 0 22299 1784 21595 414793;414794;414795;414796;414797;414798;414799;414800;414801;414802;414803 254676;254677;254678;254679;254680 254678 0 VQLLEGEVTPLKK Unmodified 1452.8552 0.85518025 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.963 26.715 3 2.4756E-05 12282 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 80.905 77.864 349060000 38290000 34250000 29248000 0 656920 0 30039000 25252000 30086000 0 0 0 23120000 18776000 20888000 0 0 0 32619000 32238000 29310000 1590100 1170700 1526200 22300 1784 21596 414804;414805;414806;414807;414808;414809;414810;414811;414812;414813;414814;414815;414816;414817;414818;414819 254681;254682;254683;254684;254685;254686;254687;254688;254689;254690;254691;254692 254684 12 VQLLGSGSILR Unmodified 1141.6819 0.68190733 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 4 4 2 2 1 2 2 2 3 3 2 1 1 2 3 3 2 4 4 5 37.936 36.219 2;3 8.6641E-11 14037 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 198.58 163.77 42117000000 1353500000 1241500000 1006500000 4209400000 4334000000 4273400000 1222300000 1354500000 1316000000 505310000 623320000 599500000 825010000 867590000 900790000 192690000 156670000 163150000 1470400000 1443200000 1580400000 4387000000 4223100000 3867400000 22301 939 21597 414820;414821;414822;414823;414824;414825;414826;414827;414828;414829;414830;414831;414832;414833;414834;414835;414836;414837;414838;414839;414840;414841;414842;414843;414844;414845;414846;414847;414848;414849;414850;414851;414852;414853;414854;414855;414856;414857;414858;414859;414860;414861;414862;414863;414864;414865;414866;414867;414868;414869;414870;414871;414872;414873;414874;414875;414876;414877;414878 254693;254694;254695;254696;254697;254698;254699;254700;254701;254702;254703;254704;254705;254706;254707;254708;254709;254710;254711;254712;254713;254714;254715;254716;254717;254718;254719;254720;254721;254722;254723;254724;254725;254726;254727;254728;254729;254730;254731;254732;254733;254734;254735;254736;254737;254738;254739;254740;254741;254742;254743;254744;254745;254746;254747;254748;254749;254750;254751;254752;254753;254754;254755;254756;254757;254758;254759;254760;254761;254762;254763;254764;254765;254766;254767;254768;254769;254770;254771;254772;254773 254697 78 VQLNSGMSLIVR Unmodified 1315.7282 0.7282056 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.259 36.643 2 3.1021E-05 14590 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 114.4 111.72 246110000 18880000 15146000 19271000 2423900 2258400 2211000 17311000 12021000 17516000 10492000 10743000 10740000 12503000 10427000 10376000 8084200 4409400 5188000 14852000 14287000 11440000 5676400 4884900 4967300 22302 1576 21598 414879;414880;414881;414882;414883;414884;414885;414886;414887;414888;414889;414890;414891;414892;414893;414894;414895;414896;414897;414898;414899;414900;414901;414902 254774;254775;254776;254777;254778;254779;254780;254781;254782 254775 7 VQLSDGR Unmodified 773.40317 0.40316629 1044 P0C0V0 degP Periplasmic serine endoprotease DegP yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 2 1 1 1 2 2 2 1 1 1 2 1 2 1 1 1 11.991 12.663 2 7.0406E-05 2885 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 175.93 117.38 2159400000 99516000 81920000 76979000 9365500 7682900 9012400 121910000 586450000 144340000 45333000 34368000 32887000 130010000 109690000 110040000 9764500 8834900 7841400 147730000 137910000 163080000 30903000 25837000 28005000 22303 1044 21599 414903;414904;414905;414906;414907;414908;414909;414910;414911;414912;414913;414914;414915;414916;414917;414918;414919;414920;414921;414922;414923;414924;414925;414926;414927;414928;414929;414930;414931;414932;414933 254783;254784;254785;254786;254787;254788;254789;254790;254791;254792;254793;254794;254795;254796;254797 254785 11 VQLSFGIGTR Unmodified 1076.5978 0.59784335 1148 P18133 pncB Nicotinate phosphoribosyltransferase yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 36.088 34.185 2 0.087755 16827 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 45.161 27.775 28835000 0 0 0 0 0 0 8765700 7273200 6690200 0 0 0 0 0 0 0 0 0 6105900 0 0 0 0 0 22304 1148 21600 414934;414935;414936;414937 254798 254798 0 VQLTATVSENQLGQR Unmodified 1642.8638 0.86384745 1429 P33643 rluD Ribosomal large subunit pseudouridine synthase D yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.387 26.239 2 5.0499E-27 12027 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 234.39 198.85 154680000 23569000 23684000 17585000 0 0 0 13571000 9070800 8750900 0 0 0 9243700 7088800 9271100 0 0 0 10481000 11092000 11277000 0 0 0 22305 1429 21601 414938;414939;414940;414941;414942;414943;414944;414945;414946;414947;414948;414949 254799;254800;254801;254802;254803;254804;254805;254806;254807 254800 8 VQLTFNNLK Unmodified 1075.6026 0.60259438 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.015 29.621 2 0.00023857 9647 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 143.89 94.445 1070800000 25649000 25754000 21733000 9912300 10297000 9343200 100400000 85238000 99099000 101070000 94072000 97496000 45155000 44205000 50709000 9244300 6692600 7164400 53632000 57261000 59056000 18547000 18399000 20658000 22306 1944 21602 414950;414951;414952;414953;414954;414955;414956;414957;414958;414959;414960;414961;414962;414963;414964;414965;414966;414967;414968;414969;414970;414971;414972;414973 254808;254809;254810;254811;254812;254813;254814;254815;254816;254817;254818;254819;254820;254821;254822;254823;254824;254825;254826 254810 19 VQLVETVIKPALANGTWVIGDR Unmodified 2378.3322 0.33218018 301 P0A720 tmk Thymidylate kinase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 50.093 48.689 3 0.00019456 23598 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 67.979 60.726 75409000 8273300 7645700 5694700 0 0 0 7295800 0 5344700 0 0 0 9056000 6011100 0 0 0 0 8039000 7558900 10490000 0 0 0 22307 301 21603 414974;414975;414976;414977;414978;414979;414980;414981;414982;414983 254827 254827 1 VQMLAQAAEEHPLHGGTGIAHTR Unmodified 2423.2128 0.2128101 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 2 3 3 3 1 3 3 3 1 3 3 3 1 2 1 19.394 19.848 3;4;5 8.4193E-29 7871 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 191.5 188.04 8911100000 725030000 561310000 586200000 2294800 1276500 2345900 791520000 769350000 649910000 0 0 1676800 662180000 754680000 682690000 1203300 0 0 841950000 875400000 996120000 1204100 2567600 2206800 22308 1137 21604 414984;414985;414986;414987;414988;414989;414990;414991;414992;414993;414994;414995;414996;414997;414998;414999;415000;415001;415002;415003;415004;415005;415006;415007;415008;415009;415010;415011;415012;415013;415014;415015;415016;415017;415018;415019;415020;415021;415022;415023;415024;415025;415026;415027;415028;415029 254828;254829;254830;254831;254832;254833;254834;254835;254836;254837;254838;254839;254840;254841;254842;254843;254844;254845;254846;254847;254848;254849;254850;254851;254852;254853;254854;254855;254856;254857;254858;254859;254860;254861;254862;254863 254836 36 VQNAAGDIVSLR Unmodified 1241.6728 0.67279921 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.319 26.171 2 2.8818E-09 11773 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 178.84 109.42 2174300000 173060000 154810000 127040000 0 0 0 270390000 235560000 234760000 0 0 0 169660000 180080000 151210000 0 0 0 165700000 161750000 150230000 0 0 0 22309 56 21605 415030;415031;415032;415033;415034;415035;415036;415037;415038;415039;415040;415041 254864;254865;254866;254867;254868;254869;254870;254871;254872;254873;254874;254875 254871 12 VQNAMYNASQQLQQIR Unmodified 1890.937 0.93702917 1899 P77338 mscK Mechanosensitive channel MscK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 2 2 2 1 1 2 1 2 2 1 1 1 1 1 2 2 2 32.86 31.222 2;3 1.1379E-14 10775 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 217.83 202.95 134240000 0 0 0 17506000 19390000 19764000 5989400 6321900 6054500 2480800 4632300 5073100 3861600 3040100 1610300 0 1262000 1716400 0 0 0 11968000 11759000 11808000 22310 1899 21606 415042;415043;415044;415045;415046;415047;415048;415049;415050;415051;415052;415053;415054;415055;415056;415057;415058;415059;415060;415061;415062;415063;415064;415065;415066;415067 254876;254877;254878;254879;254880;254881 254880 6 VQNASYQVAAYLADEIAK Unmodified 1952.9844 0.98435652 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 1 2 3 3 2 2 2 1 2 2 1 1 1 1 51.171 49.787 2;3 4.6733E-29 24494 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 261.35 239.71 15020000000 1508800000 1609300000 1391400000 0 3233000 0 3052500000 3295600000 3421500000 25774000 32009000 35555000 95260000 146260000 135990000 0 0 0 90184000 92179000 80884000 0 0 3963700 22311 1755;1756 21607 415068;415069;415070;415071;415072;415073;415074;415075;415076;415077;415078;415079;415080;415081;415082;415083;415084;415085;415086;415087;415088;415089;415090;415091;415092;415093;415094;415095;415096;415097;415098;415099 254882;254883;254884;254885;254886;254887;254888;254889;254890;254891;254892;254893;254894;254895;254896;254897;254898;254899;254900;254901;254902;254903;254904;254905;254906;254907;254908;254909;254910;254911;254912;254913;254914;254915;254916;254917 254887 33 VQNQDLGSGK Unmodified 1044.52 0.51998696 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 11.066 11.204 2 2.3077E-07 2230 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 177.97 144.18 285110000 0 0 0 0 0 0 0 0 0 76148000 64296000 80573000 0 0 0 0 8350300 8897800 0 0 0 16336000 14341000 16166000 22312 1944 21608 415100;415101;415102;415103;415104;415105;415106;415107 254918;254919;254920;254921;254922;254923;254924;254925 254922 8 VQNTNGVYVVPAFTGLGAPYWDPYAR Unmodified 2854.4079 0.40786432 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 54.892 53.41 3 0.053234 26511 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 40.819 28.265 208410000 0 0 0 0 0 0 21970000 24224000 20498000 0 0 0 27433000 26458000 30421000 0 0 0 34114000 0 23289000 0 0 0 22313 239 21609 415108;415109;415110;415111;415112;415113;415114;415115 254926;254927 254926 0 VQPFGNVVVYADMTGK Unmodified 1723.8603 0.86034198 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 45.533 43.99 2 0.00016279 20725 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 97.86 95.361 141870000 36512000 0 29697000 0 0 0 29230000 28940000 0 0 0 0 17491000 0 0 0 0 0 0 0 0 0 0 0 22314 154 21610 415116;415117;415118;415119;415120;415121 254928;254929;254930 254930 3 VQPGDMVLLSPACASLDQFK Unmodified 2175.0704 0.070411111 1098 P14900 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.29 51.042 2;3 2.8995E-18 24792 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 173.44 152.49 434640000 37340000 36543000 36854000 0 0 0 28785000 34143000 29545000 0 0 0 30578000 34146000 35386000 0 0 0 46540000 45196000 39589000 0 0 0 22315 1098 21611 415122;415123;415124;415125;415126;415127;415128;415129;415130;415131;415132;415133;415134;415135;415136;415137;415138;415139;415140;415141;415142;415143;415144;415145 254931;254932;254933;254934;254935;254936;254937;254938;254939;254940 254938 9 VQPINTALIPNWK Unmodified 1492.8402 0.84019889 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 43.407 42.456 2 1.2357E-05 20690 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 115.78 73.445 436410000 157480000 146890000 130790000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1247700 0 0 0 0 0 0 22316 1816 21612 415146;415147;415148;415149 254941;254942;254943 254942 3 VQQAIDTITLLQMEIEELK Unmodified 2214.1817 0.1817357 909 P0AF36 zapB Cell division protein ZapB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 2 2 2 2 2 2 2 55.533 54.061 2;3 5.008E-37 26964 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 182.17 177.08 5061900000 379340000 353910000 321020000 0 0 0 441940000 373800000 401710000 0 0 0 533360000 501800000 424890000 0 0 0 465470000 452670000 411980000 0 0 0 22317 909 21613 415150;415151;415152;415153;415154;415155;415156;415157;415158;415159;415160;415161;415162;415163;415164;415165;415166;415167;415168;415169;415170;415171;415172;415173;415174 254944;254945;254946;254947;254948;254949;254950;254951;254952;254953;254954;254955;254956;254957;254958;254959;254960;254961;254962;254963;254964;254965;254966 254944 19 VQQAIDTITLLQMEIEELKEK Unmodified 2471.3193 0.31929181 909 P0AF36 zapB Cell division protein ZapB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 3 2 1 1 1 3 3 2 1 1 1 2 2 2 1 1 1 54.512 53.187 2;3 2.4251E-62 25077 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 333.62 321.06 12927000000 1199500000 1238600000 1179900000 11812000 15166000 13632000 975770000 886270000 709020000 17777000 18292000 24351000 1321100000 1019100000 932290000 27724000 27968000 39790000 1153900000 1008600000 1065800000 11686000 14518000 14540000 22318 909 21614 415175;415176;415177;415178;415179;415180;415181;415182;415183;415184;415185;415186;415187;415188;415189;415190;415191;415192;415193;415194;415195;415196;415197;415198;415199;415200;415201;415202;415203;415204;415205;415206;415207;415208;415209;415210;415211;415212;415213 254967;254968;254969;254970;254971;254972;254973;254974;254975;254976;254977;254978;254979;254980;254981;254982;254983;254984;254985;254986;254987;254988;254989;254990;254991;254992;254993;254994;254995;254996 254994 30 VQQAIDTITLLQMEIEELKEK Oxidation (M) 2487.3142 0.31420644 909 P0AF36 zapB Cell division protein ZapB yes yes 0 1 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.214 52.766 3 8.1832E-05 24867 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 77.681 74.995 451720000 20521000 4522800 2581300 0 0 0 56145000 53217000 42432000 0 0 0 54915000 50391000 52889000 0 0 0 37103000 40161000 36839000 0 0 0 22319 909 21614 415214;415215;415216;415217;415218;415219;415220;415221;415222;415223;415224;415225 254997;254998;254999;255000 255000 410 4 VQQMIHPGVEALLLPSPISVEMSAMR Unmodified 2832.47 0.47001235 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 1 2 2 2 54.08 52.714 3;4 2.2803E-10 26095 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 116.38 113.51 2782000000 274550000 250770000 256740000 2939300 0 0 131430000 142600000 146110000 0 0 0 284420000 266340000 271180000 0 0 3664600 267520000 226960000 256790000 0 0 0 22320 161 21615 415226;415227;415228;415229;415230;415231;415232;415233;415234;415235;415236;415237;415238;415239;415240;415241;415242;415243;415244;415245;415246;415247;415248;415249;415250 255001;255002;255003;255004;255005;255006;255007;255008;255009;255010;255011;255012;255013 255007 13 VQQPEFAAAK Unmodified 1087.5662 0.56620887 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 1 2 1 2 1 1 1 1 1 1 1 2 1 17.053 17.695 2;3 0.00059969 6378 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 108.74 96.536 24046000000 5809600000 5783100000 4959600000 14213000 10982000 8823100 1455100000 1357600000 1286000000 2418100 0 1696800 370400000 340380000 360250000 0 0 0 785130000 762600000 736610000 1025500 0 0 22321 517 21616 415251;415252;415253;415254;415255;415256;415257;415258;415259;415260;415261;415262;415263;415264;415265;415266;415267;415268;415269;415270;415271;415272;415273;415274;415275 255014;255015;255016;255017;255018;255019;255020;255021;255022;255023;255024;255025;255026;255027;255028;255029;255030;255031;255032 255016 16 VQQQLESSDLDQYR Unmodified 1707.8064 0.80639216 544 P0A9P6 deaD ATP-dependent RNA helicase DeaD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.637 24.487 2 1.3972E-26 11024 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 237.93 228.98 122630000 16761000 15029000 15868000 0 0 0 7533500 7478200 6521700 0 2073800 1889800 6939200 5235300 5159700 0 0 0 11548000 10537000 10060000 0 0 0 22322 544 21617 415276;415277;415278;415279;415280;415281;415282;415283;415284;415285;415286;415287;415288;415289 255033;255034;255035;255036;255037;255038 255033 6 VQSELGQSLATRPELEDIEASAR Unmodified 2498.2613 0.26125966 659 P0ABI4 corA Magnesium transport protein CorA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.843 35.513 3 2.3274E-35 17588 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.85 195.55 371280000 17019000 13578000 11545000 0 0 0 25872000 0 26715000 0 17242000 0 54506000 47490000 45969000 10245000 5011000 6321000 42726000 0 47043000 0 0 0 22323 659 21618 415290;415291;415292;415293;415294;415295;415296;415297;415298;415299;415300;415301;415302;415303 255039;255040;255041;255042;255043;255044;255045;255046;255047;255048;255049;255050;255051 255043 13 VQSGIHGNATQTSIPGVFAAGDVMDHIYR Unmodified 3040.4825 0.4825026 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 42.92 41.218 3;4 1.8959E-17 20503 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.73 141.2 1888400000 207040000 209040000 181160000 2357100 2995200 2188100 141310000 119380000 100690000 0 2526000 2556500 133320000 113310000 139760000 0 0 0 174380000 177080000 174780000 0 4523200 0 22324 543 21619 415304;415305;415306;415307;415308;415309;415310;415311;415312;415313;415314;415315;415316;415317;415318;415319;415320;415321;415322;415323;415324;415325;415326;415327;415328;415329;415330;415331;415332;415333 255052;255053;255054;255055;255056;255057;255058;255059;255060;255061;255062;255063;255064;255065;255066;255067;255068;255069;255070;255071;255072;255073 255055 22 VQSMMPECGIEPK Unmodified 1504.6724 0.67240656 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.335 26.161 2 1.3612E-05 11941 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.67 109.75 87296000 26412000 20119000 21173000 0 0 0 6663900 3169200 3944200 0 0 0 2010300 1568200 0 0 0 0 0 2235900 0 0 0 0 22325 1814 21620 415334;415335;415336;415337;415338;415339;415340;415341;415342 255074;255075;255076 255074 3 VQSMPEINDADK Unmodified 1345.6184 0.61838038 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.004 21.335 2 7.5969E-06 8516 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.82 128.56 161930000 15666000 12177000 10471000 0 0 0 7735800 9808200 13228000 0 0 0 13565000 11465000 15294000 0 0 0 18009000 17576000 16931000 0 0 0 22326 486 21621 415343;415344;415345;415346;415347;415348;415349;415350;415351;415352;415353;415354 255077;255078;255079;255080;255081;255082 255079 6 VQSVAVR Unmodified 757.44464 0.44463717 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 3 2 2 1 1 2 1 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 1 11.918 12.545 1;2 4.2535E-06 3457 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 148.07 96.501 843370000 99806000 77786000 78229000 0 1595700 1212000 13858000 7749900 102900000 4550700 4443200 4266200 127690000 9182700 106930000 6638400 5852100 6618000 10946000 146270000 9085100 5897400 5780100 6076000 22327 124 21622 415355;415356;415357;415358;415359;415360;415361;415362;415363;415364;415365;415366;415367;415368;415369;415370;415371;415372;415373;415374;415375;415376;415377;415378;415379;415380;415381;415382;415383;415384;415385;415386;415387;415388;415389 255083;255084;255085;255086;255087;255088;255089;255090;255091;255092;255093;255094;255095;255096 255091 8 VQTARPNR Unmodified 940.52026 0.52026173 298 P0A707 infC Translation initiation factor IF-3;Translation initiation factor IF-3, N-terminally processed;Translation initiation factor IF-3S yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 4.8579 5.7576 2 0.021383 1021 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 75.213 49.274 148100000 0 0 0 0 0 931120 11387000 11917000 15938000 0 0 0 22917000 18463000 19192000 0 0 0 16243000 15291000 15823000 0 0 0 22328 298 21623 415390;415391;415392;415393;415394;415395;415396;415397;415398;415399 255097 255097 1 VQTGDGINNDVDTK Unmodified 1474.69 0.68996541 616 P0AAV6 ybgS Uncharacterized protein YbgS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 14.44 15.115 2 1.3918E-11 4855 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 177.44 170.31 3372300000 762520000 716830000 687580000 3035000 2823000 3340000 272630000 259230000 241410000 3635400 3704500 2841900 47106000 43391000 39611000 0 0 0 99221000 86954000 95511000 0 918650 0 22329 616 21624 415400;415401;415402;415403;415404;415405;415406;415407;415408;415409;415410;415411;415412;415413;415414;415415;415416;415417;415418;415419;415420;415421;415422;415423;415424 255098;255099;255100;255101;255102;255103;255104;255105;255106;255107;255108;255109;255110;255111;255112;255113;255114 255105 17 VQTGDGINNDVDTKTDGTTQ Unmodified 2077.94 0.9399851 616 P0AAV6 ybgS Uncharacterized protein YbgS yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 1 17.331 17.681 2;3 0.0070206 4839 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 77.078 77.078 33285000 0 0 0 7822700 8319500 7179900 0 0 0 4261200 3981100 1720300 0 0 0 0 0 0 0 0 0 0 0 0 22330 616 21625 415425;415426;415427;415428;415429;415430;415431;415432;415433;415434;415435 255115;255116;255117;255118;255119;255120 255116 6 VQTLAAYEAAR Unmodified 1191.6248 0.62478638 50 P00914 phrB Deoxyribodipyrimidine photo-lyase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 22.115 21.967 2 0.0027903 9192 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 81.338 62.898 15459000 6886000 0 4023700 0 0 0 0 0 0 0 0 0 0 0 0 1725100 1040800 1783600 0 0 0 0 0 0 22331 50 21626 415436;415437;415438;415439;415440 255121;255122 255122 0 VQTLGAVEHSPLYTSVDPLQSMSR Unmodified 2614.3061 0.30610137 1019 P0AGG8 tldD Metalloprotease TldD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.739 42.217 3 8.0065E-16 20424 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 153.94 153.23 909450000 84692000 70358000 72024000 0 0 769200 60970000 65973000 64496000 0 0 0 83561000 70832000 65432000 0 0 0 95098000 88403000 86844000 0 0 0 22332 1019 21627 415441;415442;415443;415444;415445;415446;415447;415448;415449;415450;415451;415452;415453 255123;255124;255125;255126;255127;255128;255129;255130;255131;255132;255133;255134 255131 12 VQTLLASQSNPGR Unmodified 1369.7314 0.73137672 1466 P37339 lhgO L-2-hydroxyglutarate oxidase LhgO yes yes 0 0 0 By MS/MS By MS/MS 1 1 19.68 20.303 2 4.8169E-07 7799 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.55 95.083 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22333 1466 21628 415454;415455 255135;255136 255135 2 VQTPVLGLVVR Unmodified 1179.7339 0.7339429 1096 P14294 topB DNA topoisomerase 3 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.249 39.615 2 0.05891 15846 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 48.794 48.794 48410000 3223700 2872100 2667700 0 0 0 2613600 3767500 0 2204700 2481100 1887600 2872400 2513100 3487700 2707700 0 1696700 4111300 3137800 3739500 0 1125200 1300400 22334 1096 21629 415456;415457;415458;415459;415460;415461;415462;415463;415464;415465;415466;415467;415468;415469;415470;415471;415472;415473 255137 255137 0 VQTQEHAIYPLVISWFADGR Unmodified 2329.1855 0.18551594 175 P08179 purN Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 53.859 52.43 3 1.0066E-07 25516 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 91.725 87.997 115110000 15846000 15819000 15729000 3601100 0 0 7182500 7087600 4928900 0 0 0 5802700 6329000 6587100 0 0 0 7241000 10510000 8447600 0 0 0 22335 175 21630 415474;415475;415476;415477;415478;415479;415480;415481;415482;415483;415484;415485;415486 255138;255139;255140;255141;255142 255139 1 VQTYPGR Unmodified 819.4239 0.42390173 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 2 2 2 2 3 3 4 1 1 2 3 3 3 2 3 2 3 2 3 1 1 1 22.34 21.757 2 0.00085075 3141 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 143.18 124.51 40460000000 3043000000 2662100000 2091400000 9413700 9121900 10916000 4350800000 4167000000 3958800000 8972000 8412300 10991000 3318500000 3330300000 2826100000 6479900 4233400 4759300 3580600000 3006400000 4039300000 3711100 4197600 4773900 22336 213 21631 415487;415488;415489;415490;415491;415492;415493;415494;415495;415496;415497;415498;415499;415500;415501;415502;415503;415504;415505;415506;415507;415508;415509;415510;415511;415512;415513;415514;415515;415516;415517;415518;415519;415520;415521;415522;415523;415524;415525;415526;415527;415528;415529;415530;415531;415532;415533;415534;415535;415536;415537;415538;415539;415540;415541 255143;255144;255145;255146;255147;255148;255149;255150;255151;255152;255153;255154;255155;255156;255157;255158;255159;255160;255161;255162;255163;255164;255165;255166;255167 255165 25 VQWALTK Unmodified 844.48069 0.48068833 594 P0AAH0 pstB Phosphate import ATP-binding protein PstB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.15 24.148 2 0.0010319 8383 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 138.37 109.84 2748800000 7504300 5118600 5416000 0 2674000 2937400 173660000 154080000 170730000 133780000 118320000 114840000 207600000 190290000 212210000 32712000 30342000 32534000 300000000 300450000 274690000 96554000 90329000 92061000 22337 594 21632 415542;415543;415544;415545;415546;415547;415548;415549;415550;415551;415552;415553;415554;415555;415556;415557;415558;415559;415560;415561;415562;415563;415564;415565 255168;255169;255170;255171;255172;255173;255174;255175;255176;255177;255178;255179;255180;255181;255182;255183;255184;255185 255176 18 VQWQSNPAHLQAWQEGK Unmodified 2005.9759 0.97585752 50 P00914 phrB Deoxyribodipyrimidine photo-lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.854 17.401 4 0.16652 6108 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 5.1043 3.6427 1096400000 0 0 0 0 0 0 151010000 146810000 149230000 6464100 3514900 4152200 115780000 128600000 122160000 0 0 0 86059000 96393000 86267000 0 0 0 22338 50 21633 415566;415567;415568;415569;415570;415571;415572;415573;415574;415575;415576;415577 255186 255186 1 VQYDLIVTNPPYVDAEDMSDLPNEYR Unmodified 3055.4121 0.41208258 1515 P39199 prmB 50S ribosomal protein L3 glutamine methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.783 52.343 3 0.0008834 24725 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 61.109 58.587 143090000 11552000 10534000 6721000 0 0 0 8293800 10526000 8256400 0 0 0 16308000 13014000 15288000 0 0 0 15397000 14048000 13155000 0 0 0 22339 1515 21634 415578;415579;415580;415581;415582;415583;415584;415585;415586;415587;415588;415589 255187;255188 255188 1 VQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLK Unmodified 4560.1643 0.16425432 1515 P39199 prmB 50S ribosomal protein L3 glutamine methyltransferase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 51.233 50.017 4 1.6288E-19 24438 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 130.52 130.33 212360000 26336000 24395000 19247000 0 3494300 0 11122000 0 0 0 0 0 25586000 21683000 11963000 0 0 0 16578000 25167000 26785000 0 0 0 22340 1515 21635 415590;415591;415592;415593;415594;415595;415596;415597;415598;415599;415600 255189;255190;255191 255189 3 VRAECLLK Unmodified 987.55354 0.55353569 1925 P77674 prr Gamma-aminobutyraldehyde dehydrogenase yes yes 0 0 1 By MS/MS By matching By matching By matching 1 1 1 1 14.877 15.228 2 0.16136 4883 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 50.607 16.81 11780000 0 6270100 4390600 0 0 0 0 0 0 546050 573320 0 0 0 0 0 0 0 0 0 0 0 0 0 22341 1925 21636 415601;415602;415603;415604 255192 255192 1 VRDALEAAGLK Unmodified 1141.6455 0.64552182 412 P0A8A0 yebC Probable transcriptional regulatory protein YebC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 19.037 19.602 2;3 4.4118E-07 7417 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 162 118.72 571270000 38497000 40969000 35611000 0 0 0 61113000 53491000 47283000 0 0 0 43042000 36643000 36368000 0 0 0 64762000 54064000 59428000 0 0 0 22342 412 21637 415605;415606;415607;415608;415609;415610;415611;415612;415613;415614;415615;415616;415617;415618;415619;415620;415621;415622;415623;415624;415625;415626;415627;415628 255193;255194;255195;255196;255197;255198;255199;255200;255201;255202;255203;255204;255205;255206;255207;255208;255209;255210;255211 255200 13 VRDDANTLHIEPLPYSLEE Unmodified 2210.0855 0.085527129 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 44.064 42.406 2;3 2.087E-29 20683 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 219.84 208.23 1393000000 173470000 175540000 164710000 3357900 0 2673700 116650000 104100000 110750000 5780700 4677500 4248100 93056000 86890000 83247000 0 0 0 85716000 84150000 85136000 3327600 2911700 2639000 22343 784 21638 415629;415630;415631;415632;415633;415634;415635;415636;415637;415638;415639;415640;415641;415642;415643;415644;415645;415646;415647;415648;415649;415650;415651;415652;415653;415654;415655;415656;415657;415658;415659;415660 255212;255213;255214;255215;255216;255217;255218;255219;255220;255221;255222;255223;255224;255225;255226;255227;255228;255229;255230;255231;255232 255219 21 VRDDLTQR Unmodified 1001.5254 0.52540669 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.224 11.808 2 3.9217E-06 2442 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 186.91 137.81 212350000 0 18337000 0 0 0 2547100 12173000 13013000 13335000 5354600 4234100 4797800 11534000 7579200 9668900 43292000 17817000 14944000 11646000 11634000 10439000 0 0 0 22344 222 21639 415661;415662;415663;415664;415665;415666;415667;415668;415669;415670;415671;415672;415673;415674;415675;415676;415677 255233;255234;255235 255233 3 VRDIEADTPAR Unmodified 1241.6364 0.6364137 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.395 13.002 2 1.6073E-10 3106 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 198.25 167.99 155350000 3435000 4528100 0 4733600 5272000 5606000 14081000 10231000 13863000 19003000 14276000 16697000 0 6036900 3593500 2255900 801230 1102900 7444500 6875700 6014500 4248900 5254400 0 22345 122 21640 415678;415679;415680;415681;415682;415683;415684;415685;415686;415687;415688;415689;415690;415691;415692;415693;415694;415695;415696;415697;415698;415699 255236;255237;255238;255239;255240;255241;255242;255243 255236 8 VRDIEALDELLATLTDDKPR Unmodified 2282.2118 0.21179027 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.992 52.553 4 3.973E-05 24769 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 81.665 80.51 162050000 8164700 10819000 9665300 0 0 0 15069000 16889000 11272000 0 0 0 11338000 12312000 8200100 0 0 0 19893000 18393000 20034000 0 0 0 22346 1685 21641 415700;415701;415702;415703;415704;415705;415706;415707;415708;415709;415710;415711 255244 255244 1 VRDIMIPR Unmodified 998.56952 0.56952011 839 P0AE78 corC Magnesium and cobalt efflux protein CorC yes yes 0 0 1 By MS/MS By matching 1 1 18.13 18.807 2 0.01292 5343 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 83.265 72.851 2137200 0 0 0 1892500 244620 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22347 839 21642 415712;415713 255245 255245 1 VRDMFEQAK Unmodified 1122.5492 0.5491786 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 14.685 15.027 3 0.15671 4040 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 27.047 20.357 74334000 0 0 0 0 6096500 7129700 4170100 0 0 11657000 8774700 10301000 0 0 0 0 4110600 3182100 0 0 0 7218600 6437700 5256100 22348 595 21643 415714;415715;415716;415717;415718;415719;415720;415721;415722;415723;415724 255246 255246 0 VRDMFEQAKK Unmodified 1250.6441 0.64414162 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 2 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.244 12.681 3 0.085421 2987 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 38.021 35.497 33510000 0 0 0 3665000 2826500 2342100 0 0 0 4678300 4089900 4057000 0 0 0 1279500 0 1911000 0 0 0 3048500 3330200 2282100 22349 595 21644 415725;415726;415727;415728;415729;415730;415731;415732;415733;415734;415735 255247 255247 1 VRDQLLEIGSQQLAFTHQEAK Unmodified 2410.2605 0.2604718 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 35.185 33.394 3;4 9.4535E-07 13114 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 93.804 86.183 279510000 8321600 0 4585800 1429000 1350100 0 22816000 25566000 14672000 24176000 21526000 25939000 11926000 6710900 13059000 0 0 0 25143000 20725000 20227000 10321000 12599000 8422100 22350 143 21645 415736;415737;415738;415739;415740;415741;415742;415743;415744;415745;415746;415747;415748;415749;415750;415751;415752;415753;415754;415755;415756;415757;415758;415759;415760;415761;415762;415763;415764;415765;415766;415767;415768;415769 255248;255249;255250;255251;255252;255253;255254;255255;255256;255257;255258;255259 255250 12 VREDSDTDGQVFYK Unmodified 1657.7584 0.75837933 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 2 2 2 1 1 1 2 2 2 2 2 2 1 17.262 17.842 2;3 1.4368E-06 6514 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 121.76 115.68 393680000 37963000 31044000 34273000 0 0 991700 29715000 26323000 28794000 1549000 900880 758510 27735000 24579000 24694000 0 0 0 41926000 39400000 41951000 1082700 0 0 22351 1221 21646 415770;415771;415772;415773;415774;415775;415776;415777;415778;415779;415780;415781;415782;415783;415784;415785;415786;415787;415788;415789;415790;415791;415792;415793;415794;415795;415796;415797;415798;415799 255260;255261;255262;255263;255264;255265;255266;255267;255268;255269;255270;255271;255272;255273;255274;255275;255276;255277;255278;255279;255280 255265 19 VRELTVQATTGTNSESDLSSIQDEIK Unmodified 2820.3989 0.39887536 96 P04949 fliC Flagellin yes yes 0 0 1 By MS/MS By MS/MS 1 1 35.636 34.008 3 5.7689E-05 11796 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 75.71 72.611 5854900 0 0 0 0 2980900 2874000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22352 96 21647 415800;415801 255281;255282 255282 2 VRENEPFDVALR Unmodified 1443.747 0.74702678 1721 P68679 rpsU 30S ribosomal protein S21 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 1 2 2 1 1 2 2 2 1 1 27.507 26.344 2;3 4.1158E-39 11802 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 271.65 252.91 2152500000 301830000 292310000 286150000 3853200 2671100 2577400 97736000 92673000 98942000 4933300 7104000 8729200 145800000 78790000 118070000 8809000 6489800 7223900 175920000 212650000 187440000 6176400 5642500 0 22353 1721 21648 415802;415803;415804;415805;415806;415807;415808;415809;415810;415811;415812;415813;415814;415815;415816;415817;415818;415819;415820;415821;415822;415823;415824;415825;415826;415827;415828;415829;415830;415831;415832;415833;415834;415835;415836;415837 255283;255284;255285;255286;255287;255288;255289;255290;255291;255292;255293;255294;255295;255296;255297;255298;255299;255300;255301;255302;255303;255304;255305;255306;255307;255308;255309 255305 25 VRENEPFDVALRR Unmodified 1599.8481 0.84813781 1721 P68679 rpsU 30S ribosomal protein S21 yes yes 0 0 2 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 1 2 21.569 21.377 3;4 5.5031E-09 7106 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 162.48 149.65 273310000 0 0 0 10843000 11991000 12385000 0 0 0 47569000 42728000 26367000 0 0 0 15675000 16487000 15179000 0 0 0 32439000 14594000 27053000 22354 1721 21649 415838;415839;415840;415841;415842;415843;415844;415845;415846;415847;415848;415849;415850;415851;415852;415853;415854;415855;415856;415857;415858;415859;415860 255310;255311;255312;255313;255314;255315;255316;255317;255318;255319;255320;255321;255322;255323;255324;255325;255326 255321 17 VRGDYGGYKDDSGVHHLNVLDFQR Unmodified 2746.3212 0.32117458 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 3 4 4 1 1 1 1 2 2 4 4 4 26.738 25.314 3;4;5;6 1.9952E-07 8979 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 109.97 109.11 476380000 0 0 0 44607000 54758000 53680000 5308000 3869600 5475200 1504200 4189700 3976200 0 0 0 0 0 0 0 0 0 73061000 104960000 120990000 22355 679 21650 415861;415862;415863;415864;415865;415866;415867;415868;415869;415870;415871;415872;415873;415874;415875;415876;415877;415878;415879;415880;415881;415882;415883;415884;415885;415886;415887;415888;415889;415890;415891 255327;255328;255329;255330;255331;255332;255333;255334;255335;255336;255337;255338;255339;255340;255341;255342;255343;255344;255345 255331 19 VRGEVIDIFPAESDDIALR Unmodified 2114.1008 0.10078326 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 45.858 44.369 3 0.00010449 21512 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 68.952 67.341 148980000 20891000 21360000 20814000 0 0 0 14199000 13356000 12156000 0 0 0 8040800 6767700 0 0 0 0 10829000 12538000 8027600 0 0 0 22356 426 21651 415892;415893;415894;415895;415896;415897;415898;415899;415900;415901;415902 255346;255347;255348;255349 255349 4 VRGEVNK Unmodified 800.45045 0.45045083 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 6.6407 7.4416 2 0.011728 1348 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 94.006 33.219 140970000 44804000 52598000 37328000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2117300 1926300 2191100 0 0 0 22357 58 21652 415903;415904;415905;415906;415907;415908 255350;255351;255352 255351 3 VRIDPIIVAQDGSLSGPGMACTTVAK Unmodified 2655.3724 0.37240679 1051 P10100 rlpA Rare lipoprotein A yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 42.084 39.967 3 7.8522E-07 16004 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 92.426 89.648 28361000 0 0 0 1796600 1676000 1606000 0 0 0 5107700 3726100 3590000 0 0 0 0 0 0 0 0 0 4475600 3129400 3253400 22358 1051 21653 415909;415910;415911;415912;415913;415914;415915;415916;415917 255353;255354;255355;255356;255357;255358 255354 6 VRITEYEKDANGELVAK Unmodified 1934.0109 0.010905622 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 2 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 3 2 3 1 2 1 20.864 20.698 2;3;4 7.1867E-10 6232 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 161.76 153.35 411780000 0 0 0 0 0 0 0 0 0 10600000 22086000 7777900 0 0 0 101370000 94446000 95240000 0 0 0 27529000 28651000 24079000 22359 458 21654 415918;415919;415920;415921;415922;415923;415924;415925;415926;415927;415928;415929;415930;415931;415932;415933 255359;255360;255361;255362;255363;255364;255365;255366;255367 255360 9 VRLDYVIPSR Unmodified 1216.6928 0.69280637 1388 P32132 typA GTP-binding protein TypA/BipA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 2 2 2 2 28.175 26.7 2;3 9.4713E-05 12144 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 121.5 110.29 267940000 15673000 15765000 13563000 4706600 4884500 4725200 20132000 18809000 19843000 4956500 5292900 4935800 13911000 14112000 12439000 0 0 0 18257000 20210000 42533000 3971900 4730400 4485000 22360 1388 21655 415934;415935;415936;415937;415938;415939;415940;415941;415942;415943;415944;415945;415946;415947;415948;415949;415950;415951;415952;415953;415954;415955;415956;415957;415958;415959;415960;415961;415962;415963;415964 255368;255369;255370;255371;255372;255373;255374;255375;255376;255377;255378;255379;255380;255381;255382;255383;255384;255385;255386 255377 18 VRNDMGLTNVEIMIPFVR Unmodified 2103.0969 0.096900633 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.65 51.635 3 4.673E-14 20771 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 147.92 139.1 144490000 0 0 0 10084000 9270300 10249000 0 0 0 18108000 16742000 19556000 0 0 0 7989700 10283000 8198500 0 0 0 9039500 12516000 12449000 22361 1210 21656 415965;415966;415967;415968;415969;415970;415971;415972;415973;415974;415975;415976 255387;255388;255389;255390;255391;255392;255393;255394;255395;255396 255389 10 VRNEGLNTLNDFYLLAER Unmodified 2136.0964 0.096366586 1292 P27240 rfaY Lipopolysaccharide core heptose(II) kinase RfaY yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 47.47 45.619 3 1.9147E-05 18222 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 88.565 85.556 13041000 0 0 0 0 0 629810 0 0 0 3171600 2582900 2989600 0 0 0 0 0 0 0 0 0 1657700 0 2009100 22362 1292 21657 415977;415978;415979;415980;415981;415982 255397 255397 1 VRPGILAVEALNLMQSR Unmodified 1866.0509 0.050936719 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.785 48.39 3 3.5826E-19 23886 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 149.97 145.86 945050000 98799000 90961000 91143000 972550 1443300 2238900 77568000 71376000 79574000 0 0 2836200 75764000 61086000 62646000 0 0 0 86159000 72269000 70212000 0 0 0 22363 1565 21658 415983;415984;415985;415986;415987;415988;415989;415990;415991;415992;415993;415994;415995;415996;415997;415998 255398;255399;255400;255401;255402;255403;255404;255405;255406;255407;255408;255409 255400 12 VRPGVQVK Unmodified 881.54469 0.54468557 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.023 11.628 2 0.0054688 2180 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 94.407 64.222 662030000 22749000 14447000 19086000 11580000 12464000 11984000 59227000 45505000 43730000 40545000 39768000 34615000 30666000 28871000 25645000 0 4849000 5889900 83938000 74905000 0 16527000 17735000 17307000 22364 826 21659 415999;416000;416001;416002;416003;416004;416005;416006;416007;416008;416009;416010;416011;416012;416013;416014;416015;416016;416017;416018;416019;416020;416021 255410;255411;255412;255413 255413 4 VRPMAWSCLGGGR Unmodified 1445.702 0.70200762 1830 P76187 ydhF Oxidoreductase YdhF yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 25.346 24.355 3 0.00028523 10492 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 62.891 58.718 92149000 12855000 12262000 10667000 0 0 0 0 0 7927700 0 0 0 8977200 7302500 7208300 0 0 0 8128300 8750300 8070400 0 0 0 22365 1830 21660 416022;416023;416024;416025;416026;416027;416028;416029;416030;416031 255414;255415;255416;255417;255418 255416 5 VRQEEHIELIASENYTSPR Unmodified 2270.1291 0.12912328 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 3 3 4 3 2 4 3 3 4 24.974 23.94 2;3;4 2.639E-81 10326 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 336.13 322.73 1547000000 129320000 121270000 119070000 2538300 3052800 2532900 177380000 195790000 137160000 0 0 0 85316000 71473000 84488000 0 0 0 123520000 142570000 151560000 0 0 0 22366 391 21661 416032;416033;416034;416035;416036;416037;416038;416039;416040;416041;416042;416043;416044;416045;416046;416047;416048;416049;416050;416051;416052;416053;416054;416055;416056;416057;416058;416059;416060;416061;416062;416063;416064;416065;416066;416067;416068;416069;416070;416071;416072;416073 255419;255420;255421;255422;255423;255424;255425;255426;255427;255428;255429;255430;255431;255432;255433;255434;255435;255436;255437;255438;255439;255440;255441;255442 255435 22 VSAALDK Unmodified 702.3912 0.39120462 551 P0A9R7 ftsE Cell division ATP-binding protein FtsE yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.18 12.768 2 0.10102 2956 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 53.71 21.596 8729400000 972750000 1089100000 0 34983000 34000000 35352000 904520000 919930000 741580000 0 115130000 118440000 0 0 0 390080000 314600000 332010000 888430000 778260000 879860000 99750000 80558000 0 22367 551 21662 416074;416075;416076;416077;416078;416079;416080;416081;416082;416083;416084;416085;416086;416087;416088;416089;416090;416091 255443;255444;255445;255446 255444 4 VSAASPLTQKPDQAR Unmodified 1567.8318 0.83181904 1357 P31064 yedE UPF0394 inner membrane protein YedE yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 2 1 1 1 2 2 1 2 2 1 2 2 2 1 1 1 2 2 1 1 1 1 13.988 14.678 2;3 7.999E-05 4338 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 81.703 76.33 245510000 11605000 15294000 9542700 2293300 1739400 2603200 22501000 4195600 25110000 0 6396200 5439100 21867000 21815000 23247000 1707400 2295200 1258500 28158000 25362000 4955700 3148800 2595200 2381900 22368 1357 21663 416092;416093;416094;416095;416096;416097;416098;416099;416100;416101;416102;416103;416104;416105;416106;416107;416108;416109;416110;416111;416112;416113;416114;416115;416116;416117;416118;416119;416120;416121;416122;416123;416124 255447;255448;255449;255450;255451;255452;255453;255454;255455;255456 255455 9 VSADAPLELVSR Unmodified 1255.6772 0.67721588 1390 P32157 yiiM Protein YiiM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.045 34.514 2 3.7231E-05 16543 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 111.27 83.057 570480000 77190000 82341000 80444000 1011800 1327300 938100 0 52117000 57736000 0 0 0 38784000 32077000 33561000 0 0 0 34529000 38213000 40209000 0 0 0 22369 1390 21664 416125;416126;416127;416128;416129;416130;416131;416132;416133;416134;416135;416136;416137;416138 255457;255458;255459;255460;255461 255460 4 VSADILK Unmodified 744.43815 0.43815481 294 P0A6Z1 hscA Chaperone protein HscA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 19.477 19.919 2 0.062465 7498 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 60.76 9.1876 897420000 64072000 115630000 47097000 0 0 591690 83209000 92260000 78666000 0 0 0 0 78818000 0 0 0 0 100150000 105950000 130970000 0 0 0 22370 294 21665 416139;416140;416141;416142;416143;416144;416145;416146;416147;416148;416149 255462;255463;255464;255465 255464 4 VSAHCLIR Unmodified 954.50692 0.50691985 1084 P13016 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.674 13.495 2 0.14228 3753 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 50.127 41.786 88253000 7559700 7964100 9673600 0 0 0 7702800 9585000 11662000 0 0 0 0 6003700 7673300 0 0 0 7370200 5855600 7203800 0 0 0 22371 1084 21666 416150;416151;416152;416153;416154;416155;416156;416157;416158;416159;416160 255466 255466 0 VSAIAAMK Unmodified 789.44186 0.44185998 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.202 16.935 2 0.0031662 5502 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 94.407 77.137 2036100000 110330000 103090000 103030000 0 1907000 1551800 141210000 183850000 171470000 0 0 2262900 155420000 142100000 160320000 0 0 0 265430000 248510000 240560000 0 2213500 2854300 22372 1236 21667 416161;416162;416163;416164;416165;416166;416167;416168;416169;416170;416171;416172;416173;416174;416175;416176;416177;416178 255467;255468;255469;255470;255471;255472;255473;255474;255475;255476;255477;255478;255479;255480;255481 255480 15 VSAQELLSPLADASK Unmodified 1527.8144 0.81443765 1157 P19319 narZ Respiratory nitrate reductase 2 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 44.815 42.819 2 0.00012969 21374 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 83.53 67.181 44434000 0 0 0 1893500 1490300 1985800 9742600 10387000 9402600 3565000 3094600 2871600 0 0 0 0 0 0 0 0 0 0 0 0 22373 1157 21668 416179;416180;416181;416182;416183;416184;416185;416186;416187 255482;255483;255484;255485;255486 255484 5 VSASPFGDAAR Unmodified 1076.5251 0.52507234 1615 P60061 adiC Arginine/agmatine antiporter yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 2 2 1 2 2 1 1 1 2 2 1 3 3 2 23.398 23.215 2;3 0.00010599 6834 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 118.71 110.78 164280000 19285000 9121800 12522000 0 0 0 14162000 17224000 18270000 3493500 3563200 2953200 8515900 7997600 4618500 0 0 0 17158000 13706000 11687000 0 0 0 22374 1615 21669 416188;416189;416190;416191;416192;416193;416194;416195;416196;416197;416198;416199;416200;416201;416202;416203;416204;416205;416206;416207;416208;416209;416210;416211;416212;416213;416214;416215 255487;255488;255489;255490;255491;255492;255493;255494;255495;255496 255487 10 VSATGDDAR Unmodified 890.40937 0.40937388 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 7.2135 8.0901 2 9.4327E-07 1283 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 179.21 163.77 370880000 22519000 13554000 26393000 1837200 1677000 0 76196000 67058000 66409000 0 0 0 15993000 16535000 16685000 0 0 0 21297000 24722000 0 0 0 0 22375 883 21670 416216;416217;416218;416219;416220;416221;416222;416223;416224;416225;416226;416227;416228 255497;255498;255499;255500;255501;255502;255503;255504;255505;255506;255507;255508;255509;255510;255511 255497 15 VSAVSSAGELLLAR Unmodified 1371.7722 0.7721789 917 P0AF67 tsaE tRNA threonylcarbamoyladenosine biosynthesis protein TsaE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 1 2 2 1 1 2 2 2 2 1 2 2 2 1 1 39.577 37.848 2;3 6.1487E-06 18316 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.5 115.5 498620000 64319000 58737000 55766000 2319500 1939900 1395600 30130000 33849000 31504000 2268500 2834400 3549500 26340000 25789000 25611000 0 1273300 0 41992000 48337000 38845000 1022800 0 800410 22376 917 21671 416229;416230;416231;416232;416233;416234;416235;416236;416237;416238;416239;416240;416241;416242;416243;416244;416245;416246;416247;416248;416249;416250;416251;416252;416253;416254;416255;416256;416257;416258;416259;416260;416261;416262;416263 255512;255513;255514;255515;255516;255517;255518;255519;255520;255521;255522;255523;255524;255525;255526;255527;255528;255529;255530 255524 16 VSAYELITR Unmodified 1050.571 0.5709599 227 P0A6B4 alr Alanine racemase, biosynthetic yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.943 30.604 2 0.0013731 14269 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 88.921 58.309 152260000 15937000 13260000 12494000 0 0 0 11034000 13555000 10589000 0 0 0 7417700 10713000 8050500 0 0 0 16112000 16212000 16882000 0 0 0 22377 227 21672 416264;416265;416266;416267;416268;416269;416270;416271;416272;416273;416274;416275 255531;255532 255532 2 VSCPEEIAFR Unmodified 1206.5703 0.57030797 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 27.905 26.738 2 1.8129E-06 12204 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.88 153.98 2336900000 118580000 112240000 101690000 408600 0 0 199510000 177820000 185320000 0 0 0 199630000 181230000 172560000 0 0 0 293680000 317450000 276810000 0 0 0 22378 1489 21673 416276;416277;416278;416279;416280;416281;416282;416283;416284;416285;416286;416287;416288 255533;255534;255535;255536;255537;255538;255539;255540 255538 8 VSDAASNDTESLAGAEQAAGVK Unmodified 2089.9764 0.97637061 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 28.775 27.312 2;3 2.8698E-36 12615 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 292.27 286.78 520620000 30816000 19240000 22219000 4656600 6835000 7749900 33970000 42134000 40732000 17829000 16026000 16403000 32095000 33726000 36763000 0 0 0 41535000 48875000 35252000 12252000 11168000 10346000 22379 819 21674 416289;416290;416291;416292;416293;416294;416295;416296;416297;416298;416299;416300;416301;416302;416303;416304;416305;416306;416307;416308;416309;416310;416311;416312;416313;416314;416315;416316;416317;416318;416319;416320;416321;416322;416323;416324;416325;416326;416327;416328;416329;416330 255541;255542;255543;255544;255545;255546;255547;255548;255549;255550;255551;255552;255553;255554;255555;255556;255557;255558;255559;255560;255561;255562 255553 22 VSDGDVLIALGSSGPHSNGYSLVR Unmodified 2399.2081 0.20810188 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 43.015 41.362 3 4.9249E-07 20147 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 106.63 103.53 45802000 12704000 12601000 13905000 1840600 2000100 2059000 0 0 0 0 0 692350 0 0 0 0 0 0 0 0 0 0 0 0 22380 174 21675 416331;416332;416333;416334;416335;416336;416337 255563;255564;255565 255564 3 VSDHALDVVMFAEANEAELDSILAR Unmodified 2714.3221 0.32214536 427 P0A8G3 uxaC Uronate isomerase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 55.062 53.582 3 5.2681E-22 26578 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 160.25 157.68 469550000 77855000 86025000 68223000 0 0 0 60497000 46737000 37105000 0 0 0 29134000 4411000 0 0 0 0 23614000 16815000 19136000 0 0 0 22381 427 21676 416338;416339;416340;416341;416342;416343;416344;416345;416346;416347;416348 255566;255567;255568 255567 3 VSDLQETLIGR Unmodified 1229.6616 0.66156582 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.559 31.162 2 7.9023E-15 11974 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 221.94 189.33 867800000 30085000 27381000 30727000 12921000 12346000 14131000 58672000 56582000 48461000 37913000 27617000 30486000 51553000 50984000 55855000 14831000 11382000 9505800 75045000 73952000 79884000 17452000 20257000 19776000 22382 1854 21677 416349;416350;416351;416352;416353;416354;416355;416356;416357;416358;416359;416360;416361;416362;416363;416364;416365;416366;416367;416368;416369;416370;416371;416372 255569;255570;255571;255572;255573;255574;255575;255576;255577;255578;255579;255580 255569 11 VSDPFLLDVILEK Unmodified 1486.8283 0.8282968 1809 P76035 yciW Uncharacterized protein YciW yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.868 53.613 2 0.00033584 26393 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 83.182 79.837 204200000 23116000 28777000 33468000 0 0 0 13765000 13628000 11898000 0 0 0 8141000 9351400 8717000 2753500 0 2724300 12973000 20070000 14819000 0 0 0 22383 1809 21678 416373;416374;416375;416376;416377;416378;416379;416380;416381;416382;416383;416384;416385;416386 255581 255581 1 VSDSQSDQVER Unmodified 1248.5582 0.55822296 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.803 11.619 2 0.0029828 2692 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 66.595 51.445 109050000 20998000 12813000 18529000 0 0 0 6950000 7005100 8166900 0 0 0 6492600 4440500 4545200 0 0 0 7213700 6316100 5580700 0 0 0 22384 118 21679 416387;416388;416389;416390;416391;416392;416393;416394;416395;416396;416397;416398 255582;255583 255583 1 VSDYDGYNQFVVHR Unmodified 1697.7798 0.77978347 398 P0A855 tolB Protein TolB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 28.016 26.752 2;3 1.211E-56 12253 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 313.89 307.36 1783800000 180600000 182230000 168360000 13647000 13801000 13808000 94746000 104660000 100640000 21511000 29261000 24617000 103720000 76151000 69971000 10432000 11456000 10420000 154820000 168260000 173340000 20372000 17976000 18983000 22385 398 21680 416399;416400;416401;416402;416403;416404;416405;416406;416407;416408;416409;416410;416411;416412;416413;416414;416415;416416;416417;416418;416419;416420;416421;416422;416423;416424;416425;416426;416427;416428;416429;416430;416431;416432;416433;416434;416435;416436;416437;416438;416439;416440;416441;416442;416443;416444 255584;255585;255586;255587;255588;255589;255590;255591;255592;255593;255594;255595;255596;255597;255598;255599;255600;255601;255602;255603;255604;255605;255606;255607;255608;255609;255610;255611 255602 28 VSEANLIR Unmodified 900.50288 0.50288033 1761 P75682 yagE Probable 2-keto-3-deoxy-galactonate aldolase YagE yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 18.055 18.654 2 0.024392 6969 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.741 56.059 114670000 36670000 36312000 41687000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22386 1761 21681 416445;416446;416447 255612;255613 255612 0 VSEGQTVR Unmodified 874.45084 0.45084476 985 P0AG48 rplU 50S ribosomal protein L21 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.546 11.136 2 2.3823E-06 2121 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 186.11 132.94 6514800000 759780000 770230000 628030000 18687000 20928000 22509000 275060000 231730000 293980000 62664000 60714000 49670000 383300000 353440000 348270000 48306000 58472000 78117000 662810000 606450000 615310000 66087000 52774000 47491000 22387 985 21682 416448;416449;416450;416451;416452;416453;416454;416455;416456;416457;416458;416459;416460;416461;416462;416463;416464;416465;416466;416467;416468;416469;416470;416471 255614;255615;255616;255617;255618;255619;255620;255621;255622;255623;255624;255625;255626;255627;255628;255629;255630;255631;255632;255633 255618 18 VSEIIGQVWR Unmodified 1185.6506 0.6506072 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.427 35.603 2 4.6379E-09 14024 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 195.81 159.42 302680000 24438000 21644000 21754000 2149900 0 2028900 20254000 15975000 20247000 14507000 13367000 0 12929000 12160000 13141000 0 0 0 31260000 28343000 27984000 0 9793800 10703000 22388 1451 21683 416472;416473;416474;416475;416476;416477;416478;416479;416480;416481;416482;416483;416484;416485;416486;416487;416488;416489;416490 255634;255635;255636;255637;255638;255639;255640 255636 7 VSEISIVGR Unmodified 958.54475 0.54474515 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 24.458 23.586 2 4.54E-11 10202 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 203.19 153.83 2785900000 192140000 181170000 172620000 5766900 6599100 6543900 224640000 219170000 192110000 40867000 34701000 36827000 223260000 197350000 199680000 11279000 8423800 7135400 264510000 254440000 248220000 20932000 18930000 18615000 22389 882 21684 416491;416492;416493;416494;416495;416496;416497;416498;416499;416500;416501;416502;416503;416504;416505;416506;416507;416508;416509;416510;416511;416512;416513;416514;416515;416516 255641;255642;255643;255644;255645;255646;255647;255648;255649;255650;255651;255652;255653;255654;255655;255656;255657;255658;255659;255660;255661;255662 255658 22 VSELPVLMGER Unmodified 1228.6486 0.64855829 1439 P36649 cueO Blue copper oxidase CueO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.15 36.476 2 7.1146E-06 17602 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 150.27 148.57 232840000 21624000 21681000 21970000 0 0 0 17061000 18390000 17134000 0 0 0 18681000 16884000 14381000 0 0 0 22573000 21345000 21115000 0 0 0 22390 1439 21685 416517;416518;416519;416520;416521;416522;416523;416524;416525;416526;416527;416528 255663;255664;255665;255666;255667;255668;255669;255670;255671;255672 255668 10 VSEQESEPNAFQQGISR Unmodified 1904.8864 0.88643339 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 2 2 2 2 2 1 2 2 24.2 23.579 2;3 4.7125E-24 9815 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 252.42 210.21 344480000 0 0 0 0 0 0 3187000 0 2480600 0 0 1275800 100010000 79316000 92272000 5543500 3766100 3380600 11940000 22043000 19272000 0 0 0 22391 647 21686 416529;416530;416531;416532;416533;416534;416535;416536;416537;416538;416539;416540;416541;416542;416543;416544;416545;416546;416547;416548 255673;255674;255675;255676;255677;255678;255679;255680;255681;255682 255681 10 VSEQPIR Unmodified 827.45012 0.45011648 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.748 12.555 2 0.070669 3392 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.234 59.993 397750000 36613000 33628000 31233000 552900 0 852730 37047000 39600000 31671000 0 0 0 30678000 24872000 24241000 2475300 0 0 38455000 34558000 31279000 0 0 0 22392 1609 21687 416549;416550;416551;416552;416553;416554;416555;416556;416557;416558;416559;416560;416561;416562;416563 255683;255684 255683 0 VSFDKDKR Unmodified 993.52434 0.52434406 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 2 By MS/MS 1 10.304 11.006 2 0.0031705 2507 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 84.498 60.343 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22393 295 21688 416564 255685 255685 1 VSFTIESGAK Unmodified 1037.5393 0.53932542 565 P0A9X9 cspA Cold shock protein CspA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 24.817 23.853 2 3.2067E-05 10672 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 144.09 78.623 7856300000 261890000 0 0 6136400 6199300 6579300 867050000 863680000 849490000 2266500 2105800 1746500 646270000 545550000 670450000 1652900 1221000 1206900 1052400000 1049000000 1014800000 2119600 2284700 2253500 22394 565 21689 416565;416566;416567;416568;416569;416570;416571;416572;416573;416574;416575;416576;416577;416578;416579;416580;416581;416582;416583;416584;416585;416586;416587;416588;416589 255686;255687;255688;255689;255690;255691;255692;255693;255694;255695;255696;255697;255698;255699;255700;255701;255702;255703;255704;255705;255706;255707;255708;255709;255710;255711;255712 255686 26 VSGAHLIK Unmodified 823.49159 0.49158736 505 P0A9B6 epd D-erythrose-4-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 11.711 12.551 2 0.0035904 3375 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 90.862 50.176 77749000 10415000 7339200 8451400 0 0 0 2489000 0 0 0 0 0 12484000 12446000 11028000 0 0 0 0 13096000 0 0 0 0 22395 505 21690 416590;416591;416592;416593;416594;416595;416596;416597 255713 255713 1 VSGEGHITCGHCR Unmodified 1468.63 0.62996489 172 P07913 tdh L-threonine 3-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 3 3 3 3 3 10.311 11.127 2;3;4 3.2842E-50 2520 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 304.24 293.72 3784500000 360490000 328470000 399480000 0 0 0 329510000 300930000 366100000 0 0 0 336140000 273410000 227190000 0 0 0 300720000 278250000 283760000 0 0 0 22396 172 21691 416598;416599;416600;416601;416602;416603;416604;416605;416606;416607;416608;416609;416610;416611;416612;416613;416614;416615;416616;416617;416618;416619;416620;416621;416622;416623;416624;416625;416626;416627;416628;416629;416630;416631;416632;416633 255714;255715;255716;255717;255718;255719;255720;255721;255722;255723;255724;255725;255726;255727;255728;255729;255730;255731;255732;255733;255734;255735;255736;255737;255738;255739;255740;255741;255742 255732 29 VSGGLHGVGVSVVNALSQK Unmodified 1806.9952 0.99519598 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 34.41 32.84 2;3 8.6978E-38 15066 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 267.07 249.48 2861100000 210980000 209770000 187490000 7379000 8265600 4829200 214550000 204090000 206710000 38693000 37039000 31565000 201610000 187350000 227970000 16317000 10893000 16306000 286550000 246890000 262460000 14318000 14412000 14650000 22397 883 21692 416634;416635;416636;416637;416638;416639;416640;416641;416642;416643;416644;416645;416646;416647;416648;416649;416650;416651;416652;416653;416654;416655;416656;416657;416658;416659;416660;416661;416662;416663;416664;416665;416666;416667;416668;416669;416670;416671;416672;416673;416674;416675 255743;255744;255745;255746;255747;255748;255749;255750;255751;255752;255753;255754;255755;255756;255757;255758;255759;255760;255761;255762;255763;255764;255765;255766;255767;255768;255769;255770;255771;255772;255773;255774;255775;255776;255777;255778;255779;255780 255776 38 VSGGSYEYFEGMGLPELISEVK Unmodified 2390.1352 0.13517944 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 1 2 2 1 2 2 2 54.914 53.449 2;3 1.0725E-34 26585 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 268.56 266.2 2015100000 675410000 608080000 574890000 0 0 0 14426000 18967000 5584300 0 0 0 10976000 9669200 5316300 0 0 0 31022000 33033000 27750000 0 0 0 22398 1219 21693 416676;416677;416678;416679;416680;416681;416682;416683;416684;416685;416686;416687;416688;416689;416690;416691;416692;416693;416694;416695;416696 255781;255782;255783;255784;255785;255786 255781 6 VSGIMGAR Oxidation (M) 805.41162 0.41162248 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 1 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 1 2 12.994 13.125 2 0.0084175 2757 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 84.699 67.772 254000000 0 0 0 0 0 0 0 0 0 53016000 26037000 22893000 0 0 0 36589000 35284000 35279000 0 0 0 16512000 12672000 15718000 22399 1616 21694 416697;416698;416699;416700;416701;416702;416703;416704;416705;416706;416707;416708;416709 255787;255788;255789;255790;255791;255792;255793 255789 575 7 VSGIMGAR Unmodified 789.41671 0.41670786 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.222 15.722 2 5.4494E-05 4230 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 170.17 145.97 10897000000 22820000 0 24360000 230080 0 1520400 139200000 125620000 115970000 997580000 927840000 907330000 46735000 52241000 57133000 1718500000 1567400000 2040700000 41914000 0 38459000 750070000 642060000 679220000 22400 1616 21694 416710;416711;416712;416713;416714;416715;416716;416717;416718;416719;416720;416721;416722;416723;416724;416725;416726;416727;416728;416729;416730 255794;255795;255796;255797;255798;255799;255800;255801;255802;255803;255804;255805 255803 12 VSGNSPVIFDVTHALQCR Unmodified 1998.9945 0.99454405 299 P0A715 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 2 2 2 2 2 2 2 43.105 41.597 2;3 4.3438E-55 20090 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 324.94 321.76 6499500000 579830000 540120000 513250000 3344800 3414300 2693400 42992000 646520000 614220000 0 0 0 605430000 591090000 563000000 0 0 0 644250000 594100000 555220000 0 0 0 22401 299 21695 416731;416732;416733;416734;416735;416736;416737;416738;416739;416740;416741;416742;416743;416744;416745;416746;416747;416748;416749;416750;416751;416752;416753;416754;416755;416756 255806;255807;255808;255809;255810;255811;255812;255813;255814;255815;255816;255817;255818;255819;255820;255821;255822;255823;255824;255825;255826 255815 20 VSGQTQFNGVNVLAK Unmodified 1560.826 0.82600539 96 P04949 fliC Flagellin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 30.568 29.223 2 2.5774E-11 13585 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 198.81 191.01 89763000 30371000 20737000 23217000 5012200 4873200 5553100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22402 96 21696 416757;416758;416759;416760;416761;416762 255827;255828;255829;255830;255831;255832 255831 6 VSGYAVR Unmodified 750.40244 0.40243801 212;1559;1717 P09373;P68066;P42632 pflB;grcA;tdcE Formate acetyltransferase 1;Autonomous glycyl radical cofactor;PFL-like enzyme TdcE no no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.466 13.058 2 0.00019738 3692 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 166.13 150.02 17049000000 2270200 712970000 4062200 0 0 0 3750300000 3574700000 3469700000 0 387440 0 1351200000 0 1132600000 6778600 936670 878780 1023300000 1013900000 996780000 0 8240100 0 22403 212;1717;1559 21697 416763;416764;416765;416766;416767;416768;416769;416770;416771;416772;416773;416774;416775;416776;416777;416778 255833;255834;255835;255836;255837;255838;255839;255840;255841 255838 9 VSHGCVR Unmodified 813.39156 0.39155574 617 P0AAX8 ybiS Probable L,D-transpeptidase YbiS yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 4.6934 5.6313 2 0.0068198 983 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 93.883 88.345 471090000 0 0 0 499110 1000100 967960 53191000 50393000 51896000 0 0 0 47214000 45407000 48508000 0 0 0 58984000 52337000 60691000 0 0 0 22404 617 21698 416779;416780;416781;416782;416783;416784;416785;416786;416787;416788;416789;416790 255842;255843;255844 255844 3 VSIDTSSLQYENDDLMR Unmodified 1984.9048 0.90478557 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 40.754 39.046 2 2.6497E-24 18228 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 213.63 207.91 72801000 0 3848500 0 0 0 0 9302100 9549800 10910000 0 0 0 8480900 8678200 7896400 0 0 0 4961300 5950900 3222900 0 0 0 22405 212 21699 416791;416792;416793;416794;416795;416796;416797;416798;416799;416800 255845;255846;255847;255848 255848 4 VSIDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGK Unmodified 4351.9382 0.93815925 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 53.427 51.992 3;4 1.9942E-47 25646 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 208.5 208.5 3769700000 159870000 149750000 120490000 5357100 0 6936100 482240000 434190000 425410000 12342000 13371000 15358000 352210000 401730000 312180000 0 0 0 334430000 291540000 247220000 0 5122300 0 22406 212 21700 416801;416802;416803;416804;416805;416806;416807;416808;416809;416810;416811;416812;416813;416814;416815;416816;416817;416818;416819;416820;416821;416822;416823;416824;416825;416826;416827;416828;416829;416830;416831;416832;416833;416834;416835 255849;255850;255851;255852;255853;255854;255855;255856;255857;255858;255859;255860;255861;255862;255863;255864;255865;255866;255867;255868;255869;255870;255871;255872;255873;255874;255875 255857 27 VSILDENIAHDDKPGLYFHEEYVDMCR Unmodified 3264.4856 0.48559865 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 3 3 3 2 2 1 3 3 3 1 3 3 3 1 2 40.889 39.13 3;4;5 4.0749E-54 19516 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 247.5 243.94 7393500000 507090000 476790000 484840000 4539300 0 3727300 769200000 764960000 646740000 9903400 10441000 3543600 565210000 533540000 543780000 0 0 2256400 662330000 710730000 683900000 2850100 7124000 0 22407 445 21701 416836;416837;416838;416839;416840;416841;416842;416843;416844;416845;416846;416847;416848;416849;416850;416851;416852;416853;416854;416855;416856;416857;416858;416859;416860;416861;416862;416863;416864;416865;416866;416867;416868;416869;416870;416871;416872;416873;416874;416875;416876;416877;416878;416879;416880;416881;416882 255876;255877;255878;255879;255880;255881;255882;255883;255884;255885;255886;255887;255888;255889;255890;255891;255892;255893;255894;255895;255896;255897;255898;255899;255900;255901;255902;255903;255904;255905;255906;255907;255908;255909;255910 255877 35 VSILGGGLAGWQR Unmodified 1312.7252 0.72516913 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.331 41.816 2;3 1.0979E-17 20342 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 217.64 199.2 1490200000 144780000 133690000 118310000 0 0 0 161940000 162090000 142600000 0 0 0 105720000 97889000 107560000 0 0 0 113040000 98038000 104580000 0 0 0 22408 1364 21702 416883;416884;416885;416886;416887;416888;416889;416890;416891;416892;416893;416894;416895;416896;416897;416898;416899;416900;416901;416902;416903;416904;416905;416906 255911;255912;255913;255914;255915;255916;255917;255918;255919;255920;255921;255922;255923 255915 13 VSITERPDWR Unmodified 1257.6466 0.64658446 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.65 21.68 2 0.0005869 8648 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.48 90.703 122810000 13762000 12071000 13922000 0 0 476140 0 10150000 0 1144600 921820 0 9000200 9192800 7308700 0 0 0 14869000 15901000 13167000 0 0 926850 22409 806 21703 416907;416908;416909;416910;416911;416912;416913;416914;416915;416916;416917;416918;416919;416920 255924;255925;255926;255927;255928;255929;255930;255931;255932 255929 9 VSKEETFGPLAPLFR Unmodified 1689.909 0.90900673 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 45.025 43.179 3 3.4334E-06 21443 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.942 93.038 452820000 127500000 155680000 111630000 0 0 0 0 50048000 0 2756000 2486100 2723200 0 0 0 0 0 0 0 0 0 0 0 0 22410 1258 21704 416921;416922;416923;416924;416925;416926;416927 255933;255934;255935;255936;255937 255933 4 VSLAADPVEEIK Unmodified 1269.6816 0.68163256 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.878 31.432 2 5.4462E-05 15325 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.62 74.476 894080000 106250000 97927000 90172000 1712300 1760000 1631200 104400000 0 86887000 0 0 0 60911000 59243000 64109000 0 0 0 101650000 0 117430000 0 0 0 22411 1649 21705 416928;416929;416930;416931;416932;416933;416934;416935;416936;416937;416938;416939;416940;416941;416942 255938;255939;255940;255941;255942;255943;255944;255945;255946;255947 255938 10 VSLAGACGVGGYGSR Unmodified 1409.6721 0.67214728 14 CON__P13647 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 25.139 24.178 2 6.8653E-07 8908 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 124.21 120.35 46172000 0 0 0 0 0 0 0 0 0 13374000 12658000 12752000 0 0 0 1154600 1334900 870890 0 0 0 4028300 0 0 + 22412 14 21706 416943;416944;416945;416946;416947;416948;416949 255948 255948 1 VSLDDPEALTK Unmodified 1186.6081 0.60813326 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.711 28.338 2 0.0028656 10395 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 67.207 43.778 1337500000 284040000 266720000 229330000 1993400 1645400 0 0 4143600 3526500 0 0 0 37720000 36903000 33477000 0 0 0 133210000 146690000 139910000 6466800 5143900 6626600 22413 65 21707 416950;416951;416952;416953;416954;416955;416956;416957;416958;416959;416960;416961;416962;416963;416964;416965 255949;255950;255951 255950 2 VSLELGGNAPFIVFDDADLDK Unmodified 2234.1107 0.11067925 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 55.038 53.552 2 2.0201E-27 26529 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.62 173.26 143580000 35810000 39029000 0 0 0 0 13396000 12629000 13655000 0 0 0 5687600 4142000 0 0 0 0 0 9315500 9915200 0 0 0 22414 1258 21708 416966;416967;416968;416969;416970;416971;416972;416973;416974 255952;255953 255953 2 VSLEQIEFWQGGEHR Unmodified 1813.8747 0.87474649 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 41.061 39.432 2;3 2.1281E-20 19033 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 277.1 263.9 895430000 89273000 86997000 69650000 2353800 2672300 2554000 82351000 73094000 78037000 7705900 6457300 6342400 42455000 44357000 44445000 6390200 5819600 4588500 70277000 71074000 70327000 7568800 8950700 11686000 22415 944 21709 416975;416976;416977;416978;416979;416980;416981;416982;416983;416984;416985;416986;416987;416988;416989;416990;416991;416992;416993;416994;416995;416996;416997;416998;416999;417000;417001;417002;417003;417004;417005;417006;417007;417008;417009;417010 255954;255955;255956;255957;255958;255959;255960;255961;255962;255963;255964;255965;255966;255967;255968;255969;255970;255971;255972;255973;255974;255975;255976;255977;255978 255975 24 VSLHMHQGSPTQIADAVSK Unmodified 2005.0051 0.005108738 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 2 3 3 2 2 2 1 2 2 2 2 2 2 2 2 3 3 3 1 1 1 1 1 2 22.185 21.969 2;3;4 9.8117E-23 6728 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 197.47 185.11 648180000 79672000 61514000 61213000 3568000 5225400 3527300 7027300 14686000 23529000 8699700 9312500 8686700 14664000 16301000 16467000 107620000 87891000 80506000 8985800 6513300 8704600 2976200 3428500 7457700 22416 515 21710 417011;417012;417013;417014;417015;417016;417017;417018;417019;417020;417021;417022;417023;417024;417025;417026;417027;417028;417029;417030;417031;417032;417033;417034;417035;417036;417037;417038;417039;417040;417041;417042;417043;417044;417045;417046;417047;417048;417049;417050;417051;417052;417053;417054;417055;417056;417057 255979;255980;255981;255982;255983;255984;255985;255986;255987;255988;255989;255990;255991;255992;255993 255981 13 VSLIAGVSK Unmodified 872.53312 0.53311783 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.379 23.391 2 0.00027359 10604 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 120.15 107.11 1817600000 123810000 118430000 93703000 3084800 2686500 3497600 179900000 153670000 151620000 7372500 6569800 6097400 144840000 133940000 108610000 0 1018700 0 201530000 191810000 171240000 5255800 5301800 3655800 22417 59 21711 417058;417059;417060;417061;417062;417063;417064;417065;417066;417067;417068;417069;417070;417071;417072;417073;417074;417075;417076;417077;417078;417079 255994;255995;255996;255997;255998;255999;256000;256001;256002;256003;256004;256005;256006;256007;256008;256009 255995 16 VSLIHVDVNYSDLYTGLIDVNLGDMQK Unmodified 3020.5165 0.51648807 847 P0AED0 uspA Universal stress protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.699 53.273 3 1.0611E-22 19560 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 168.06 166.42 1225400000 88549000 91824000 85878000 36830000 37460000 32449000 157550000 144140000 144270000 0 33733000 32306000 62895000 64617000 47266000 0 0 0 49302000 43678000 51970000 7537400 7515800 5621400 22418 847 21712 417080;417081;417082;417083;417084;417085;417086;417087;417088;417089;417090;417091;417092;417093;417094;417095;417096;417097;417098;417099 256010;256011;256012;256013;256014;256015;256016;256017;256018;256019;256020;256021;256022;256023;256024 256017 15 VSLITSDGIK Unmodified 1031.5863 0.58627561 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.355 26.208 2 0.00025317 12052 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 116.37 106.46 890850000 52139000 51251000 47574000 0 0 0 85539000 97278000 101150000 0 0 0 48846000 50033000 47892000 0 0 0 112590000 106350000 90209000 0 0 0 22419 826 21713 417100;417101;417102;417103;417104;417105;417106;417107;417108;417109;417110;417111 256025;256026;256027;256028;256029 256025 5 VSLIVCSALK Unmodified 1088.6264 0.62636629 1589 P46859 gntK Thermoresistant gluconokinase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 34.665 32.988 2 0.0014765 15048 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 84.522 79.537 718580000 0 0 0 0 0 0 78644000 68093000 70834000 1083300 0 0 81041000 75251000 69214000 0 0 0 87287000 90275000 95974000 0 883420 0 22420 1589 21714 417112;417113;417114;417115;417116;417117;417118;417119;417120;417121;417122 256030;256031;256032;256033;256034;256035 256035 5 VSLLFPWHTLER Unmodified 1496.814 0.81398414 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 46.959 45.535 2;3 1.9555E-05 22756 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 109.72 104.64 933660000 79975000 74275000 84389000 3351700 2557000 1732400 74912000 73787000 68713000 12472000 13397000 13835000 45484000 43531000 44049000 7621700 6470700 5875500 82871000 70761000 66794000 17385000 19333000 20090000 22421 944 21715 417123;417124;417125;417126;417127;417128;417129;417130;417131;417132;417133;417134;417135;417136;417137;417138;417139;417140;417141;417142;417143;417144;417145;417146;417147;417148;417149;417150;417151;417152;417153;417154;417155;417156;417157;417158;417159;417160;417161;417162;417163;417164 256036;256037;256038;256039;256040;256041;256042;256043;256044;256045;256046;256047;256048;256049;256050;256051;256052;256053;256054;256055;256056;256057;256058;256059;256060;256061;256062;256063;256064;256065 256042 29 VSLLSAHIQR Unmodified 1122.6509 0.65094155 1317 P28305 pabC Aminodeoxychorismate lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 21.059 21.421 3 0.15847 8615 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 21.396 17.902 74624000 8352900 6779100 5726100 0 0 0 6726600 6194800 0 0 0 0 7134800 6235100 5913900 0 0 0 7403000 8140200 6017700 0 0 0 22422 1317 21716 417165;417166;417167;417168;417169;417170;417171;417172;417173;417174;417175 256066 256066 1 VSLTMAMR Unmodified 907.46194 0.4619435 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.198 26.05 2 8.1081E-05 11210 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 164.89 139.07 659910000 26885000 24096000 24828000 0 0 0 83079000 79341000 83835000 0 0 0 58119000 48956000 49387000 0 0 0 59541000 56560000 65282000 0 0 0 22423 167 21717 417176;417177;417178;417179;417180;417181;417182;417183;417184;417185;417186;417187 256067;256068;256069;256070;256071;256072 256072 6 VSLVAAR Unmodified 714.43882 0.43882351 177 P08192 folC Bifunctional protein FolC;Folylpolyglutamate synthase;Dihydrofolate synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 15.459 16.43 2 0.0078225 5587 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 89.703 46.985 127430000 0 0 0 0 2165100 2364000 0 0 0 0 0 0 0 23621000 23761000 0 0 0 40633000 0 34888000 0 0 0 22424 177 21718 417188;417189;417190;417191;417192;417193;417194 256073;256074;256075;256076;256077 256075 5 VSLVLVHAQDHLMTSMLAR Unmodified 2120.1234 0.12344973 1743 P69791 chbA N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 40.875 38.891 4 0.00030918 17996 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 65.784 63.322 79591000 0 0 0 0 0 0 7351500 11208000 8209800 3515100 2729800 2624200 10926000 12521000 11297000 0 0 0 3578100 0 5630200 0 0 0 22425 1743 21719 417195;417196;417197;417198;417199;417200;417201;417202;417203;417204;417205 256078;256079 256079 2 VSLVYGQMNEPPGNR Unmodified 1659.8039 0.80388973 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 3 2 2 29.867 28.419 2;3 4.432E-20 13012 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 208.84 203.12 1569000000 51288000 41852000 32668000 5696500 1071700 6282400 130930000 139170000 126400000 29791000 28116000 29611000 143500000 138140000 120530000 5341400 3185300 5520000 157620000 169780000 158770000 5170500 19729000 18832000 22426 646 21720 417206;417207;417208;417209;417210;417211;417212;417213;417214;417215;417216;417217;417218;417219;417220;417221;417222;417223;417224;417225;417226;417227;417228;417229;417230;417231;417232;417233;417234;417235;417236;417237;417238;417239;417240;417241;417242;417243;417244;417245;417246;417247;417248 256080;256081;256082;256083;256084;256085;256086;256087;256088;256089;256090;256091;256092;256093;256094;256095;256096;256097;256098;256099;256100;256101;256102;256103;256104;256105;256106;256107;256108;256109;256110;256111;256112;256113;256114;256115;256116;256117;256118;256119;256120;256121;256122;256123;256124;256125;256126;256127;256128;256129 256119 47 VSLVYGQMNEPPGNR Oxidation (M) 1675.7988 0.79880436 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.208 23.964 2 7.8004E-08 10876 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.45 113.84 90899000 0 0 0 0 0 0 8549800 12083000 12719000 3565200 2982900 1709300 6912100 6396100 5637000 0 0 0 16227000 12027000 0 1354400 734600 0 22427 646 21720 417249;417250;417251;417252;417253;417254;417255;417256;417257;417258;417259;417260;417261;417262 256130;256131;256132;256133;256134;256135;256136 256131 356 6 VSMLLIR Unmodified 830.50479 0.50479459 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 33.818 32.813 2 0.0019075 15098 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 121.68 113.71 195380000 0 0 0 0 0 0 0 0 0 0 0 0 50846000 53114000 47893000 0 1868500 2408300 10799000 12839000 15610000 0 0 0 22428 647 21721 417263;417264;417265;417266;417267;417268;417269;417270 256137;256138;256139;256140 256138 3 VSNILAK Unmodified 743.45414 0.45413923 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 14.711 15.455 2 0.005062 4831 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 101.21 51.187 1445800000 0 0 0 6751600 6156500 6854900 275530000 266260000 269210000 15726000 0 0 186740000 0 146560000 0 0 0 0 0 266000000 0 0 0 22429 62 21722 417271;417272;417273;417274;417275;417276;417277;417278;417279;417280 256141;256142;256143;256144;256145;256146 256145 6 VSNQQDDMTK Unmodified 1164.5081 0.50810164 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.679 11.236 2 5.9639E-07 2667 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 174.02 169.61 362720000 47076000 39999000 42046000 0 0 0 17438000 11627000 17191000 4269200 3901100 2706200 32499000 30817000 27853000 6349700 9519700 10688000 25027000 18690000 15027000 0 0 0 22430 297 21723 417281;417282;417283;417284;417285;417286;417287;417288;417289;417290;417291;417292;417293;417294;417295;417296;417297;417298 256147;256148;256149;256150;256151;256152;256153;256154;256155;256156;256157;256158;256159;256160;256161;256162 256157 16 VSPEIFSTSLR Unmodified 1234.6558 0.65575216 1473 P37595 iaaA Isoaspartyl peptidase;Isoaspartyl peptidase subunit alpha;Isoaspartyl peptidase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 36.038 34.474 2 8.3411E-06 16632 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 148.94 130.5 207140000 25339000 20854000 23021000 0 622390 0 15159000 19875000 17092000 0 0 0 12207000 10737000 11887000 0 0 0 13683000 17983000 18685000 0 0 0 22431 1473 21724 417299;417300;417301;417302;417303;417304;417305;417306;417307;417308;417309;417310;417311 256163;256164;256165;256166;256167;256168 256166 4 VSPLGCLLPAR Unmodified 1181.6591 0.6590634 1858 P76418 yegU Uncharacterized protein YegU yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 40.314 38.755 2 0.15489 18981 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 39.305 36.771 54861000 9569000 5497600 6541100 0 0 0 0 0 5651000 0 0 0 6421300 4725900 4752700 0 0 0 5988200 0 5714000 0 0 0 22432 1858 21725 417312;417313;417314;417315;417316;417317;417318;417319;417320 256169 256169 0 VSQAFTVFLPVR Unmodified 1362.766 0.76597131 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 49.486 48.101 2;3 1.5712E-08 23340 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 202.05 181.72 2891800000 215720000 192010000 177440000 1961300 1753100 1387700 185300000 194590000 178050000 5027600 2695400 3155300 267860000 254650000 256130000 0 0 0 301140000 355660000 288030000 4211800 2612700 2415300 22433 86 21726 417321;417322;417323;417324;417325;417326;417327;417328;417329;417330;417331;417332;417333;417334;417335;417336;417337;417338;417339;417340;417341;417342;417343;417344;417345;417346;417347;417348;417349;417350;417351;417352;417353 256170;256171;256172;256173;256174;256175;256176;256177;256178;256179;256180;256181;256182;256183;256184;256185;256186;256187;256188;256189;256190;256191;256192;256193 256184 23 VSQAFWHEWR Unmodified 1344.6364 0.63635412 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 30.745 29.136 2;3 1.6503E-06 13813 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 162.64 140.4 1361200000 15735000 19530000 13781000 369670 0 1164400 217840000 236650000 208270000 17859000 13325000 12103000 128110000 133330000 124940000 0 0 0 73554000 72178000 65594000 2248400 2402400 2219700 22434 25 21727 417354;417355;417356;417357;417358;417359;417360;417361;417362;417363;417364;417365;417366;417367;417368;417369;417370;417371;417372;417373;417374;417375;417376;417377;417378;417379;417380;417381;417382;417383;417384;417385;417386 256194;256195;256196;256197;256198;256199;256200;256201;256202;256203;256204;256205;256206;256207 256200 13 VSQALDILTYTNK Unmodified 1464.7824 0.78240924 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 2 2 2 2 2 1 2 1 2 2 2 2 2 1 40.024 38.372 2;3 4.2982E-24 18600 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 240.21 234.21 4786300000 658380000 672640000 590950000 1874000 8104100 7231100 197360000 171200000 178630000 12051000 9851200 10810000 289510000 263010000 257310000 6698400 7310800 4198300 470710000 473660000 467690000 10529000 10535000 6091400 22435 1636 21728 417387;417388;417389;417390;417391;417392;417393;417394;417395;417396;417397;417398;417399;417400;417401;417402;417403;417404;417405;417406;417407;417408;417409;417410;417411;417412;417413;417414;417415;417416;417417;417418;417419;417420;417421;417422;417423;417424;417425;417426;417427;417428;417429 256208;256209;256210;256211;256212;256213;256214;256215;256216;256217;256218;256219;256220;256221;256222;256223;256224;256225;256226;256227;256228;256229;256230;256231;256232;256233;256234;256235;256236;256237;256238;256239 256222 32 VSQALDILTYTNKK Unmodified 1592.8774 0.87737225 1636 P61175 rplV 50S ribosomal protein L22 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 31.944 30.576 2;3 3.4539E-21 14259 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 225.55 206.58 1231000000 86405000 89189000 87489000 32015000 27559000 27751000 30960000 25810000 20082000 46904000 41640000 57252000 31575000 31557000 27266000 77434000 71378000 64202000 54270000 71145000 61069000 57112000 56402000 54562000 22436 1636 21729 417430;417431;417432;417433;417434;417435;417436;417437;417438;417439;417440;417441;417442;417443;417444;417445;417446;417447;417448;417449;417450;417451;417452;417453;417454;417455;417456;417457;417458;417459;417460;417461;417462;417463;417464;417465;417466;417467;417468;417469;417470;417471;417472;417473;417474;417475;417476 256240;256241;256242;256243;256244;256245;256246;256247;256248;256249;256250;256251;256252;256253;256254;256255;256256;256257;256258;256259;256260;256261;256262;256263;256264;256265;256266;256267;256268;256269;256270;256271;256272;256273;256274;256275 256272 36 VSQALETVTTTAEK Unmodified 1476.7672 0.7671531 1479 P37642 yhjD Inner membrane protein YhjD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.596 21.926 2 2.718E-14 9598 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 183.08 161 117390000 10145000 11323000 11162000 2634600 0 2430600 10596000 11857000 9260900 5999600 5055500 6237300 4608500 3046400 3188000 0 0 0 5642200 6595500 4845300 2766200 0 0 22437 1479 21730 417477;417478;417479;417480;417481;417482;417483;417484;417485;417486;417487;417488;417489;417490;417491;417492;417493;417494 256276;256277;256278;256279;256280;256281;256282;256283;256284;256285;256286;256287;256288;256289;256290 256279 15 VSQASDSYYYR Unmodified 1337.5888 0.58879481 861 P0AEH5 elaB Protein ElaB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.451 17.837 2 2.369E-21 6585 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 213.53 208.92 6038400000 537030000 486410000 544550000 216210000 213760000 197770000 1246300000 0 1226000000 298600000 251780000 244960000 0 0 76462000 7122900 3238200 3682400 0 185590000 147750000 51513000 48987000 50705000 22438 861 21731 417495;417496;417497;417498;417499;417500;417501;417502;417503;417504;417505;417506;417507;417508;417509;417510;417511;417512;417513;417514;417515;417516;417517;417518 256291;256292;256293;256294;256295;256296;256297;256298;256299;256300;256301;256302;256303;256304;256305;256306;256307;256308 256295 18 VSQWLVEYTQQR Unmodified 1535.7732 0.77324153 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 36.847 35.248 2;3 5.9799E-31 16196 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 263.11 259.22 3772600000 13183000 8472000 13029000 0 0 0 435780000 451710000 422410000 403000000 373690000 367610000 157180000 149830000 169460000 41457000 27658000 30626000 189460000 180980000 167750000 64435000 55136000 49701000 22439 1088 21732 417519;417520;417521;417522;417523;417524;417525;417526;417527;417528;417529;417530;417531;417532;417533;417534;417535;417536;417537;417538;417539;417540;417541;417542;417543;417544;417545;417546;417547;417548;417549;417550;417551;417552;417553;417554;417555;417556;417557;417558 256309;256310;256311;256312;256313;256314;256315;256316;256317;256318;256319;256320;256321;256322;256323;256324;256325;256326;256327;256328;256329;256330;256331;256332;256333;256334;256335;256336 256336 27 VSRPGLR Unmodified 783.47152 0.47152062 377 P0A7W7 rpsH 30S ribosomal protein S8 yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.898 11.488 2 0.017923 2365 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 86.866 49.221 2255500000 271760000 267030000 204510000 16695000 12139000 18479000 101180000 83228000 81346000 50454000 45245000 54464000 277580000 85105000 89712000 45915000 15259000 20085000 130320000 152280000 148750000 30865000 26097000 27002000 22440 377 21733 417559;417560;417561;417562;417563;417564;417565;417566;417567;417568;417569;417570;417571;417572;417573;417574;417575;417576;417577;417578;417579;417580;417581;417582 256337;256338;256339;256340;256341;256342 256338 6 VSRPSADTIIGELSGMAK Unmodified 1830.9509 0.9509479 465 P0A8W0 nanR Transcriptional regulator NanR yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.072 41.371 3 4.1527E-07 20122 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 83.253 82.108 97538000 16736000 15769000 14815000 0 687650 800670 0 0 0 4857800 0 2791700 5196600 5142100 5195900 0 0 0 7184300 9066000 6126300 1127300 2041800 0 22441 465 21734 417583;417584;417585;417586;417587;417588;417589;417590;417591;417592;417593;417594;417595;417596;417597 256343;256344 256343 1 VSSFHASFTQK Unmodified 1237.6091 0.60913632 1637 P61316 lolA Outer-membrane lipoprotein carrier protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 15.199 16.018 2;3 2.2598E-10 5553 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 214.71 166.75 1151300000 70093000 87020000 73891000 326610 0 329530 111640000 118730000 144240000 0 0 0 97097000 82189000 81889000 0 0 0 98328000 90564000 94982000 0 0 0 22442 1637 21735 417598;417599;417600;417601;417602;417603;417604;417605;417606;417607;417608;417609;417610;417611;417612;417613;417614;417615;417616;417617;417618;417619;417620;417621;417622;417623 256345;256346;256347;256348;256349;256350;256351;256352;256353;256354;256355;256356;256357;256358;256359;256360 256346 16 VSSGCIR Unmodified 777.38032 0.38032236 1831;1795 P76193;P75954 ynhG;ycfS Probable L,D-transpeptidase YnhG;Probable L,D-transpeptidase YcfS no no 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.72 11.551 2 0.00091203 2757 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 141.55 132.73 459700000 0 69000000 67673000 0 0 0 75298000 76258000 84348000 0 0 0 13270000 12162000 13271000 0 0 0 18393000 15391000 14634000 0 0 0 22443 1831;1795 21736 417624;417625;417626;417627;417628;417629;417630;417631;417632;417633;417634 256361;256362;256363 256362 2 VSSPQWQATLK Unmodified 1243.6561 0.65608651 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.328 25.161 2 1.9443E-06 9001 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 155.84 145.61 403810000 0 0 0 3896500 3651100 3734400 9302500 14929000 11988000 14060000 12018000 9272000 17157000 16953000 13280000 6342800 3633300 5707700 53102000 54411000 56557000 29033000 31881000 32901000 22444 1435 21737 417635;417636;417637;417638;417639;417640;417641;417642;417643;417644;417645;417646;417647;417648;417649;417650;417651;417652;417653;417654;417655 256364;256365;256366;256367;256368;256369;256370;256371;256372 256370 9 VSSPVSTMMACPDGK Unmodified 1565.6888 0.6887849 1212 P23827 eco Ecotin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 28.811 27.459 2 1.8134E-07 12750 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 132.32 123.84 430270000 41201000 41529000 27560000 0 0 0 38629000 33960000 32694000 1322600 0 0 32836000 36102000 34610000 0 0 0 38478000 35762000 35582000 0 0 0 22445 1212 21738 417656;417657;417658;417659;417660;417661;417662;417663;417664;417665;417666;417667;417668 256373;256374;256375;256376;256377;256378;256379;256380;256381;256382;256383;256384 256376 9 VSSPVSTMMACPDGKK Unmodified 1693.7837 0.78374792 1212 P23827 eco Ecotin yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.727 21.611 3 0.00050612 9228 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.716 62.765 158480000 11593000 10231000 7571800 2054200 1750500 2851600 10861000 12669000 12827000 7449900 5849700 3941000 8440400 10452000 6249300 1610100 1453900 1962800 9088900 10041000 10831000 2816400 3339200 2542000 22446 1212 21739 417669;417670;417671;417672;417673;417674;417675;417676;417677;417678;417679;417680;417681;417682;417683;417684;417685;417686;417687;417688;417689;417690;417691;417692 256385;256386;256387;256388;256389;256390;256391;256392;256393;256394 256388 9 VSSSEGVTVGPVLMGVAK Unmodified 1715.9128 0.91277148 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 40.148 38.483 2;3 1.2588E-09 19047 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 158.4 148.97 1397000000 227090000 203910000 183680000 0 0 0 89076000 79736000 91576000 0 0 0 81309000 70290000 67884000 0 0 0 103410000 103930000 95108000 0 0 0 22447 1872 21740 417693;417694;417695;417696;417697;417698;417699;417700;417701;417702;417703;417704;417705;417706;417707;417708;417709;417710;417711;417712;417713;417714;417715;417716 256395;256396;256397;256398;256399;256400;256401;256402;256403;256404;256405;256406;256407;256408;256409;256410 256396 16 VSTAEAR Unmodified 732.37662 0.37661719 32 P00547 thrB Homoserine kinase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 5.3201 6.2416 2 0.0020767 1340 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 118.69 87.108 49004000 0 0 0 0 0 0 0 0 0 0 0 0 7688800 6425000 5583100 0 0 0 10754000 9504600 9048600 0 0 0 22448 32 21741 417717;417718;417719;417720;417721;417722 256411;256412;256413 256411 2 VSTEVDAR Unmodified 875.43486 0.43486035 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.458 12.291 2 0.00063356 3277 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 129.68 87.208 1771500000 308370000 263480000 270560000 0 0 0 232450000 214300000 213030000 0 0 0 34499000 36113000 33472000 0 0 0 56209000 52869000 56112000 0 0 0 22449 401 21742 417723;417724;417725;417726;417727;417728;417729;417730;417731;417732;417733;417734 256414;256415;256416 256414 3 VSTGSLIMVFEVAGEAGAAAPAAK Unmodified 2246.1617 0.16166896 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 3 2 2 1 1 1 4 3 3 3 3 2 3 3 3 54.657 53.238 2;3;4 6.341E-22 21313 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 226.24 226.24 3494000000 133440000 118120000 113450000 303720000 286900000 342080000 148560000 149830000 153630000 10103000 11750000 10810000 112950000 71020000 100140000 0 0 0 230390000 186940000 145270000 288090000 303490000 273330000 22450 133 21743 417735;417736;417737;417738;417739;417740;417741;417742;417743;417744;417745;417746;417747;417748;417749;417750;417751;417752;417753;417754;417755;417756;417757;417758;417759;417760;417761;417762;417763;417764;417765;417766;417767;417768;417769;417770;417771;417772;417773;417774;417775;417776;417777;417778;417779;417780;417781;417782;417783;417784;417785;417786;417787;417788;417789 256417;256418;256419;256420;256421;256422;256423;256424;256425;256426;256427;256428;256429;256430;256431;256432;256433;256434;256435;256436;256437;256438;256439;256440 256422 24 VSTGSLIMVFEVAGEAGAAAPAAK Oxidation (M) 2262.1566 0.15658358 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1 2 2 2 53.552 52.199 2;3 1.7803E-15 19082 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 154.69 149.98 83529000 0 0 0 14295000 15760000 8236600 0 0 0 0 0 0 0 1566000 1301500 0 0 0 0 2360500 3162400 10515000 14237000 12094000 22451 133 21743 417790;417791;417792;417793;417794;417795;417796;417797;417798;417799;417800;417801;417802;417803;417804 256441;256442;256443;256444;256445;256446;256447;256448 256447 49 8 VSTLDLENLPR Unmodified 1255.6772 0.67721588 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.357 35.558 2 4.5638E-14 17034 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 203.35 146.62 1599500000 221550000 230080000 189450000 1382000 1280100 0 90900000 98190000 107540000 1079500 0 0 0 87533000 95418000 0 0 0 168040000 151110000 154560000 0 1329600 0 22452 444 21744 417805;417806;417807;417808;417809;417810;417811;417812;417813;417814;417815;417816;417817;417818;417819;417820 256449;256450;256451;256452;256453;256454;256455;256456;256457;256458;256459;256460 256457 12 VSTLEMCR Unmodified 994.45759 0.4575864 1867 P76535 murQ N-acetylmuramic acid 6-phosphate etherase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 17.315 17.997 2 0.00037677 6207 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 142.64 91.67 169930000 10654000 12343000 10673000 0 0 0 22631000 19479000 14660000 0 0 0 13280000 11001000 9975800 0 0 0 12966000 15562000 16705000 0 0 0 22453 1867 21745 417821;417822;417823;417824;417825;417826;417827;417828;417829;417830;417831;417832 256461;256462;256463;256464;256465 256465 1 VSVADVSK Unmodified 803.43888 0.43888309 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.478 14.808 2 0.00061965 3908 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 130.27 86.457 436720000 0 0 0 18717000 24247000 21956000 0 0 0 82579000 75918000 80136000 0 0 0 21651000 14635000 14262000 0 0 0 30616000 25282000 26724000 22454 1742 21746 417833;417834;417835;417836;417837;417838;417839;417840;417841;417842;417843;417844 256466;256467;256468;256469;256470;256471 256471 6 VSVFGYDLEK Unmodified 1155.5812 0.58119023 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 41.15 39.452 2 0.0044028 19239 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 67.414 53.612 133390000 10283000 10185000 1761000 0 0 0 19086000 0 18771000 0 1503300 0 10833000 10456000 11793000 0 0 0 15213000 11635000 11867000 0 0 0 22455 1447 21747 417845;417846;417847;417848;417849;417850;417851;417852;417853;417854;417855;417856 256472;256473;256474;256475;256476 256473 5 VSVFGYDLEKDVVNAK Unmodified 1781.92 0.91996535 1447 P36879 yadG Uncharacterized ABC transporter ATP-binding protein YadG yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.961 40.085 3 9.4158E-05 16282 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 76.82 74.52 82583000 0 0 0 2210100 1921100 2232100 0 16526000 0 10391000 13927000 8868100 0 7567500 0 0 3515800 0 0 0 0 5499800 5570100 4355100 22456 1447 21748 417857;417858;417859;417860;417861;417862;417863;417864;417865;417866;417867;417868 256477;256478;256479;256480;256481 256477 5 VSVGDKTQTGALIMIFDSADGAADAAPAQAEEK Unmodified 3276.582 0.58200145 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 4 4 4 2 3 2 1 2 1 1 3 3 4 50.003 48.767 3;4;5 1.0587E-25 19404 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 176.25 175.54 5011900000 0 0 0 809000000 904390000 921300000 0 0 0 91735000 87181000 83158000 0 0 0 15447000 12680000 11705000 0 0 2540800 667870000 709660000 695210000 22457 133 21749 417869;417870;417871;417872;417873;417874;417875;417876;417877;417878;417879;417880;417881;417882;417883;417884;417885;417886;417887;417888;417889;417890;417891;417892;417893;417894;417895;417896;417897;417898;417899;417900;417901;417902 256482;256483;256484;256485;256486;256487;256488;256489;256490;256491;256492;256493;256494;256495;256496;256497;256498;256499;256500;256501;256502;256503;256504;256505;256506;256507;256508;256509;256510;256511;256512;256513;256514 256489 33 VSVGDKTQTGALIMIFDSADGAADAAPAQAEEK Oxidation (M) 3292.5769 0.57691608 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 47.359 45.809 3 1.3374E-13 16382 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 123.97 118.81 37450000 0 0 0 8652200 8701700 8006300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2958200 4152000 4979600 22458 133 21749 417903;417904;417905;417906;417907;417908 256515;256516;256517;256518 256516 48 4 VSVGDKTQTGALIMIFDSADGAADAAPAQAEEKK Unmodified 3404.677 0.67696447 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 4 6 8 3 3 3 2 2 2 8 4 7 45.623 44.045 3;4;5;6 1.7829E-33 17265 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 183.91 182.06 6870900000 0 0 0 1164500000 1271300000 1303600000 0 0 0 110620000 121580000 106880000 0 0 0 50413000 36153000 37661000 0 0 0 900280000 911790000 856090000 22459 133 21750 417909;417910;417911;417912;417913;417914;417915;417916;417917;417918;417919;417920;417921;417922;417923;417924;417925;417926;417927;417928;417929;417930;417931;417932;417933;417934;417935;417936;417937;417938;417939;417940;417941;417942;417943;417944;417945;417946;417947;417948;417949;417950;417951;417952;417953;417954;417955;417956;417957;417958;417959;417960 256519;256520;256521;256522;256523;256524;256525;256526;256527;256528;256529;256530;256531;256532;256533;256534;256535;256536;256537;256538;256539;256540;256541;256542;256543;256544;256545;256546;256547;256548;256549;256550;256551;256552;256553;256554;256555;256556;256557;256558;256559;256560;256561 256532 43 VSVGDKTQTGALIMIFDSADGAADAAPAQAEEKK Oxidation (M) 3420.6719 0.67187909 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 1 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 42.839 40.963 4 3.7305E-10 14687 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 90.858 90.85 174130000 0 0 0 37016000 37864000 36303000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17884000 23658000 21406000 22460 133 21750 417961;417962;417963;417964;417965;417966;417967;417968;417969;417970;417971;417972 256562;256563;256564;256565;256566;256567;256568;256569;256570;256571;256572 256570 48 11 VSVIDAK Unmodified 730.4225 0.42250475 1819 P76116 yncE Uncharacterized protein YncE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.358 14.956 2 0.0023307 4724 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 114.19 58.16 2247700000 86841000 82802000 84217000 3978100 3629100 4876700 139200000 136190000 128340000 10282000 10676000 10718000 182780000 157560000 153240000 9114500 7793700 7671500 320040000 339210000 295190000 24055000 25018000 24248000 22461 1819 21751 417973;417974;417975;417976;417977;417978;417979;417980;417981;417982;417983;417984;417985;417986;417987;417988;417989;417990;417991;417992;417993;417994;417995;417996 256573;256574;256575;256576;256577;256578;256579;256580;256581;256582;256583;256584 256577 11 VSVPTMDAAEAFK Unmodified 1364.6646 0.66460229 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 37.527 35.997 2 5.7479E-05 17283 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 90.685 71.582 1053400000 143340000 138130000 124710000 0 0 3810200 0 0 0 0 0 0 119960000 109900000 108470000 0 0 0 147290000 157820000 0 0 0 0 22462 1649 21752 417997;417998;417999;418000;418001;418002;418003;418004;418005 256585;256586;256587;256588;256589;256590;256591;256592 256589 8 VSVSGLGDR Unmodified 888.46649 0.46649483 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 17.039 17.727 2 0.075949 6385 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 53.775 37.631 1275500000 89434000 0 0 0 0 0 243360000 233290000 233220000 0 0 0 0 0 0 0 0 0 153540000 161720000 160900000 0 0 0 22463 1510 21753 418006;418007;418008;418009;418010;418011;418012 256593;256594 256594 0 VSVSGSGNVAQYAIEK Unmodified 1607.8155 0.81550028 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 27.245 26.009 2 6.3886E-24 11828 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 213.99 205.24 774450000 208440000 198750000 189350000 0 0 0 22263000 23170000 27073000 935560 0 0 15543000 13351000 13177000 0 0 0 19912000 21576000 20905000 0 0 0 22464 26 21754 418013;418014;418015;418016;418017;418018;418019;418020;418021;418022;418023;418024;418025 256595;256596;256597;256598;256599;256600;256601;256602;256603;256604;256605;256606 256601 12 VSVSIFGR Unmodified 863.4865 0.48650199 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 4 3 5 1 1 1 1 2 1 1 1 1 1 1 1 32.8 31.227 2 6.6235E-07 13910 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 198.39 140.94 20474000000 133300000 100210000 98627000 6280400 8931900 6227500 63167000 71192000 68876000 4812800000 4733800000 4182000000 127140000 134470000 130570000 608270000 645360000 639040000 186300000 158810000 169060000 1236200000 1090900000 1062400000 22465 936 21755 418026;418027;418028;418029;418030;418031;418032;418033;418034;418035;418036;418037;418038;418039;418040;418041;418042;418043;418044;418045;418046;418047;418048;418049;418050;418051;418052;418053;418054;418055;418056;418057;418058;418059 256607;256608;256609;256610;256611;256612;256613;256614;256615;256616;256617;256618;256619;256620;256621;256622;256623;256624;256625;256626;256627;256628;256629;256630;256631;256632;256633;256634;256635;256636;256637;256638;256639;256640;256641;256642;256643;256644;256645;256646;256647;256648;256649;256650;256651;256652;256653;256654;256655;256656;256657 256655 49 VSVVGQFNYWDGRR Unmodified 1681.8325 0.83248775 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 1 By MS/MS 1 36.557 35.104 3 0.16544 16262 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 11.44 4.859 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22466 169 21756 418060 256658 256658 1 VSWHEAR Unmodified 883.43005 0.43004974 445 P0A8M3 thrS Threonine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.609 12.473 2 0.0033765 3437 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 108.24 104.38 1156200000 89707000 96637000 71997000 846770 0 945400 111860000 115970000 112130000 0 0 0 86570000 88949000 77668000 0 0 0 97978000 103750000 101170000 0 0 0 22467 445 21757 418061;418062;418063;418064;418065;418066;418067;418068;418069;418070;418071;418072;418073;418074 256659;256660;256661;256662;256663;256664;256665;256666;256667;256668;256669;256670 256665 12 VSYFGQK Unmodified 827.41775 0.41775372 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 2 16.895 17.401 1;2 0.0012799 4921 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 132.8 121.99 3760200000 306780000 260800000 224130000 23908000 18997000 22942000 582290000 572180000 554130000 78193000 62812000 53576000 150120000 161930000 151550000 6867600 4623700 5217100 155980000 145200000 132010000 52911000 6888600 26169000 22468 548 21758 418075;418076;418077;418078;418079;418080;418081;418082;418083;418084;418085;418086;418087;418088;418089;418090;418091;418092;418093;418094;418095;418096;418097;418098;418099;418100;418101;418102;418103;418104;418105;418106;418107;418108;418109;418110;418111;418112;418113;418114;418115;418116;418117;418118;418119;418120 256671;256672;256673;256674;256675;256676;256677;256678;256679;256680;256681;256682;256683;256684;256685;256686;256687;256688;256689;256690;256691;256692;256693;256694;256695;256696 256671 26 VSYPIYHIDNIVKPVSK Unmodified 1971.0829 0.082948353 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 3 3 3 1 1 3 3 3 32.837 31.463 2;3;4 3.7757E-10 14980 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 167.37 165.13 9239900000 1329700000 1099700000 1014400000 1318500 0 2042000 798740000 756470000 698060000 0 0 0 561850000 528880000 526620000 0 974870 1967000 632240000 630710000 656240000 0 0 0 22469 1195 21759 418121;418122;418123;418124;418125;418126;418127;418128;418129;418130;418131;418132;418133;418134;418135;418136;418137;418138;418139;418140;418141;418142;418143;418144;418145;418146;418147;418148;418149;418150;418151;418152;418153;418154;418155;418156;418157;418158;418159;418160 256697;256698;256699;256700;256701;256702;256703;256704;256705;256706;256707;256708;256709;256710;256711;256712;256713;256714;256715;256716;256717;256718;256719;256720;256721;256722;256723;256724;256725;256726;256727;256728;256729;256730;256731;256732 256708 35 VSYQVLNQHSPR Unmodified 1426.7317 0.73171107 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.659 17.416 3 4.6628E-06 6159 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 142.08 139.81 373950000 23805000 25784000 26523000 0 0 0 33611000 33737000 31527000 0 0 0 26600000 26486000 25719000 0 0 0 36019000 39536000 44604000 0 0 0 22470 891 21760 418161;418162;418163;418164;418165;418166;418167;418168;418169;418170;418171;418172 256733;256734;256735;256736;256737;256738;256739;256740;256741;256742 256738 10 VTAEDVLKPGTADILVPR Unmodified 1893.0571 0.057127534 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 3 2 3 3 3 3 4 4 4 3 3 4 8 6 7 4 4 3 6 5 5 41.009 39.56 2;3;4 1.504E-19 16065 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 205.3 202.88 79801000000 824530000 732030000 664630000 61905000 50796000 56152000 447780000 474490000 442670000 5514900000 5381800000 5046200000 520460000 496400000 537530000 13825000000 11478000000 10654000000 762000000 747000000 741880000 6366300000 7136500000 6838100000 22471 458 21761 418173;418174;418175;418176;418177;418178;418179;418180;418181;418182;418183;418184;418185;418186;418187;418188;418189;418190;418191;418192;418193;418194;418195;418196;418197;418198;418199;418200;418201;418202;418203;418204;418205;418206;418207;418208;418209;418210;418211;418212;418213;418214;418215;418216;418217;418218;418219;418220;418221;418222;418223;418224;418225;418226;418227;418228;418229;418230;418231;418232;418233;418234;418235;418236;418237;418238;418239;418240;418241;418242;418243;418244;418245;418246;418247;418248;418249;418250;418251;418252;418253;418254;418255;418256;418257;418258;418259;418260;418261;418262;418263;418264;418265;418266;418267;418268;418269;418270 256743;256744;256745;256746;256747;256748;256749;256750;256751;256752;256753;256754;256755;256756;256757;256758;256759;256760;256761;256762;256763;256764;256765;256766;256767;256768;256769;256770;256771;256772;256773;256774;256775;256776;256777;256778;256779;256780;256781;256782;256783;256784;256785;256786;256787;256788;256789;256790;256791;256792;256793;256794;256795;256796;256797;256798;256799;256800;256801;256802;256803;256804;256805;256806;256807;256808;256809;256810;256811;256812;256813;256814;256815;256816;256817;256818;256819;256820;256821;256822;256823;256824;256825;256826;256827;256828;256829;256830;256831;256832 256768 88 VTAEEVDILLR Unmodified 1256.6976 0.69761697 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 42.8 41.062 2 5.2515E-06 20500 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 152.28 140.43 134700000 0 0 0 0 0 0 23196000 22906000 18817000 0 0 0 15761000 14308000 13604000 0 0 0 8055700 8931100 9125000 0 0 0 22472 506 21762 418271;418272;418273;418274;418275;418276;418277;418278;418279 256833;256834;256835;256836;256837;256838 256833 6 VTAERDPANLK Unmodified 1212.6463 0.64625011 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 2 2 3 4 4 1 2 2 3 4 3 2 1 1 4 3 3 1 3 1 11.824 12.529 1;2;3 2.093E-20 3356 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 246.86 217.77 61783000000 4145100000 3969500000 3397000000 9177200 8043700 8735900 6558500000 6762900000 6836400000 5426500 9150500 6268000 5261100000 4568400000 4262400000 5196600 6076400 4753000 5034100000 5207300000 5703900000 3766500 7137900 3138900 22473 504 21763 418280;418281;418282;418283;418284;418285;418286;418287;418288;418289;418290;418291;418292;418293;418294;418295;418296;418297;418298;418299;418300;418301;418302;418303;418304;418305;418306;418307;418308;418309;418310;418311;418312;418313;418314;418315;418316;418317;418318;418319;418320;418321;418322;418323;418324;418325;418326;418327;418328;418329;418330;418331;418332;418333;418334;418335;418336;418337;418338;418339 256839;256840;256841;256842;256843;256844;256845;256846;256847;256848;256849;256850;256851;256852;256853;256854;256855;256856;256857;256858;256859;256860;256861;256862 256842 24 VTAIPSDFITVASTESCPFAIMANEEK Unmodified 2927.3933 0.39326139 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 54.819 53.387 2;3 3.2537E-11 25186 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 128.4 126.11 778720000 53597000 65573000 58006000 0 0 0 24075000 21947000 18233000 0 0 0 105240000 105780000 102970000 0 0 0 43123000 89405000 90773000 0 0 0 22474 86 21764 418340;418341;418342;418343;418344;418345;418346;418347;418348;418349;418350;418351;418352;418353;418354;418355;418356;418357;418358;418359 256863;256864;256865;256866;256867;256868;256869;256870;256871 256870 9 VTAIPSDFITVASTESCPFAIMANEEKR Unmodified 3083.4944 0.49437242 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 53.391 51.94 3 2.2241E-31 24579 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 195.03 189.43 361350000 0 0 0 0 0 0 6248900 6557500 23927000 0 0 0 48175000 59329000 47197000 0 0 0 53469000 59449000 56994000 0 0 0 22475 86 21765 418360;418361;418362;418363;418364;418365;418366;418367;418368 256872;256873;256874;256875;256876;256877;256878;256879 256876 8 VTALAAR Unmodified 700.42317 0.42317345 48 P00904 trpGD Bifunctional protein TrpGD;Anthranilate synthase component 2;Anthranilate phosphoribosyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 16.568 17.141 2 0.0064974 5650 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 90.939 39.903 70509000 0 0 13907000 0 0 0 0 0 0 0 0 0 0 15351000 13136000 1581700 1293500 1454600 11582000 0 12202000 0 0 0 22476 48 21766 418369;418370;418371;418372;418373;418374;418375;418376;418377 256880;256881;256882 256880 3 VTALFVDGK Unmodified 948.52803 0.52803245 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.738 26.44 2 0.00024651 12068 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.52 105.13 2489800000 185250000 186850000 178880000 3383200 3118500 2670100 248540000 212530000 225240000 7485000 7312100 7559900 159750000 186170000 164550000 0 1557600 0 231390000 243920000 222650000 2531600 4753300 3657600 22477 59 21767 418378;418379;418380;418381;418382;418383;418384;418385;418386;418387;418388;418389;418390;418391;418392;418393;418394;418395;418396;418397;418398;418399 256883;256884;256885;256886;256887;256888;256889;256890;256891;256892 256887 7 VTASHTTAMHSYNGAYTSR Unmodified 2053.9276 0.9275867 1257 P25524 codA Cytosine deaminase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS 2 2 2 2 2 2 1 44.828 43.676 3;4 0.13941 17525 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 23.562 21.828 78253000 0 0 0 0 0 0 0 0 0 9109200 12616000 10308000 0 0 0 19195000 10674000 12323000 0 0 0 0 0 4027700 22478 1257 21768 418400;418401;418402;418403;418404;418405;418406;418407;418408;418409;418410;418411;418412 256893;256894;256895;256896 256893 4 VTASVGSWIK Unmodified 1046.576 0.57604528 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.396 28.939 2 0.00051539 10775 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 98.033 63.225 355280000 14121000 16105000 12032000 5299600 4215900 6103800 39213000 32473000 33740000 9757800 8284700 7841100 19687000 16247000 17832000 3822000 0 2505400 27230000 33564000 29299000 5425300 4808300 5671900 22479 656 21769 418413;418414;418415;418416;418417;418418;418419;418420;418421;418422;418423;418424;418425;418426;418427;418428;418429;418430;418431;418432;418433;418434;418435 256897;256898;256899;256900;256901;256902;256903 256902 7 VTASVQVTNTGK Unmodified 1203.6459 0.64591575 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.574 14.44 2 7.1674E-12 4503 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 192.12 182.16 187710000 11601000 9848500 9641400 0 0 0 19719000 24639000 18351000 0 0 0 12688000 13444000 12292000 0 0 0 15705000 22829000 16950000 0 0 0 22480 1421 21770 418436;418437;418438;418439;418440;418441;418442;418443;418444;418445;418446;418447 256904;256905;256906;256907;256908;256909;256910;256911 256905 3 VTATAIDQVQVELPMPNR Unmodified 1981.0303 0.030260856 1718 P68187 malK Maltose/maltodextrin import ATP-binding protein MalK yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1 2 2 2 2 2 2 1 1 1 1 2 2 45.328 43.608 2;3 8.1656E-56 21123 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 347.26 334.7 255710000 0 0 0 2209300 2294300 856550 21522000 19745000 8495600 23289000 23837000 19360000 17807000 16049000 16328000 0 0 0 15083000 14255000 13251000 10346000 15930000 15056000 22481 1718 21771 418448;418449;418450;418451;418452;418453;418454;418455;418456;418457;418458;418459;418460;418461;418462;418463;418464;418465;418466;418467;418468;418469;418470;418471;418472;418473;418474;418475;418476;418477 256912;256913;256914;256915;256916;256917;256918;256919;256920;256921;256922;256923;256924;256925;256926;256927;256928;256929 256926 16 VTAVDAK Unmodified 702.3912 0.39120462 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 2 2 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 2 2 2 2 2 2 10.738 11.336 2 0.0012423 2056 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 133.47 72.346 9044500000 1139000000 1272100000 969380000 62698000 52402000 58208000 526740000 486070000 487420000 102740000 74381000 62554000 582980000 445340000 401500000 101100000 102960000 101220000 625170000 586350000 630960000 64634000 59149000 49481000 22482 990 21772 418478;418479;418480;418481;418482;418483;418484;418485;418486;418487;418488;418489;418490;418491;418492;418493;418494;418495;418496;418497;418498;418499;418500;418501;418502;418503;418504;418505;418506;418507;418508;418509;418510;418511;418512 256930;256931;256932;256933;256934;256935;256936;256937;256938;256939 256935 8 VTAVEAK Unmodified 716.40685 0.40685468 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 2 2 2 1 1 1 2 1 1 2 2 2 2 2 2 1 1 1 10.967 11.559 2 0.0055591 2058 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 99.139 33.002 21529000000 1381900000 1387800000 984330000 1661100000 1596500000 1416600000 1140500000 1111800000 972410000 176820000 159700000 159120000 762830000 662480000 622860000 54775000 56308000 52891000 1198000000 1115300000 1109300000 1179700000 1235400000 1330800000 22483 542 21773 418513;418514;418515;418516;418517;418518;418519;418520;418521;418522;418523;418524;418525;418526;418527;418528;418529;418530;418531;418532;418533;418534;418535;418536;418537;418538;418539;418540;418541;418542;418543;418544;418545;418546;418547;418548 256940;256941;256942;256943;256944;256945;256946;256947;256948;256949;256950;256951;256952;256953;256954;256955;256956;256957;256958 256951 18 VTAVEAKEDGIYVTMEGK Unmodified 1938.9608 0.96084389 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 4 3 5 3 2 2 2 4 4 5 29.552 27.996 2;3 6.7828E-55 10053 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 275.76 262.36 6494300000 0 0 0 1134000000 1130900000 1215300000 0 0 0 115820000 101230000 106580000 0 0 0 34462000 24066000 23668000 0 0 0 922290000 846940000 839120000 22484 542 21774 418549;418550;418551;418552;418553;418554;418555;418556;418557;418558;418559;418560;418561;418562;418563;418564;418565;418566;418567;418568;418569;418570;418571;418572;418573;418574;418575;418576;418577;418578;418579;418580;418581;418582;418583;418584;418585;418586;418587;418588;418589;418590 256959;256960;256961;256962;256963;256964;256965;256966;256967;256968;256969;256970;256971;256972;256973;256974;256975;256976;256977;256978;256979;256980;256981;256982;256983;256984;256985;256986;256987;256988;256989;256990;256991;256992;256993;256994;256995;256996;256997;256998;256999;257000;257001;257002;257003;257004 256977 46 VTAVEAKEDGIYVTMEGK Oxidation (M) 1954.9558 0.95575851 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 3 4 7 1 1 3 1 3 25.753 24.637 2;3 1.7425E-06 7484 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 89.344 85.44 108450000 0 0 0 21538000 11086000 40450000 0 0 0 455820 0 676460 0 0 0 0 0 0 0 0 0 13685000 7512500 13045000 22485 542 21774 418591;418592;418593;418594;418595;418596;418597;418598;418599;418600;418601;418602;418603;418604;418605;418606;418607;418608;418609;418610;418611;418612;418613 257005;257006;257007;257008;257009;257010;257011;257012;257013;257014;257015;257016;257017;257018 257009 324 14 VTAVEAKEDGIYVTMEGKK Unmodified 2067.0558 0.055806904 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 23.797 22.767 3;4 6.579E-16 7187 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 157.42 139.56 878230000 0 0 0 168730000 205390000 171030000 0 0 0 13304000 12285000 11515000 0 0 0 0 0 0 0 0 0 86334000 92115000 117530000 22486 542 21775 418614;418615;418616;418617;418618;418619;418620;418621;418622;418623;418624;418625;418626;418627;418628;418629;418630;418631 257019;257020;257021;257022;257023;257024;257025;257026;257027;257028;257029;257030;257031;257032;257033;257034;257035;257036 257034 18 VTAYPLEHPLECYGYR Unmodified 1966.9247 0.92473315 462 P0A8V0 rbn Ribonuclease BN yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 34.384 32.899 3 0.020629 15106 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 35.527 32.139 62517000 0 12194000 12563000 0 0 0 14208000 0 13115000 0 0 0 10437000 0 0 0 0 0 0 0 0 0 0 0 22487 462 21776 418632;418633;418634;418635;418636 257037 257037 0 VTDAEIAEVLAR Unmodified 1285.6878 0.68778057 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 2 2 2 1 1 40.53 38.721 2;3 1.9469E-17 18631 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 222 201.09 2147200000 251330000 233800000 233690000 1515600 1115800 1297400 248150000 224190000 245980000 3092000 4160500 2861300 112280000 107100000 96535000 0 0 0 128670000 127900000 121570000 891450 1046700 0 22488 1662 21777 418637;418638;418639;418640;418641;418642;418643;418644;418645;418646;418647;418648;418649;418650;418651;418652;418653;418654;418655;418656;418657;418658;418659;418660;418661;418662;418663;418664;418665;418666;418667;418668;418669 257038;257039;257040;257041;257042;257043;257044;257045;257046;257047;257048;257049;257050;257051;257052;257053;257054;257055;257056;257057;257058;257059;257060;257061 257054 22 VTDALLDYGHK Unmodified 1230.6245 0.62445203 456 P0A8S1 argP HTH-type transcriptional regulator ArgP yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 1 1 2 2 3 2 2 2 22.209 21.846 2;3 0.00045344 6895 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 102.06 96.026 321060000 24833000 31878000 49799000 0 0 0 36582000 25791000 0 0 0 0 20217000 20496000 2196100 12332000 10960000 10895000 26723000 26324000 22029000 0 0 0 22489 456 21778 418670;418671;418672;418673;418674;418675;418676;418677;418678;418679;418680;418681;418682;418683;418684;418685;418686;418687;418688;418689;418690;418691 257062;257063;257064;257065 257063 4 VTDCGGVLHCFTEDR Unmodified 1764.756 0.75595326 960 P0AFQ7 ycfH Uncharacterized deoxyribonuclease YcfH yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.434 26.286 3 2.7342E-06 11883 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 85.619 85.557 215640000 24248000 32404000 24615000 0 0 0 10605000 12507000 14368000 0 0 0 19212000 13477000 10825000 0 0 0 16657000 18525000 18196000 0 0 0 22490 960 21779 418692;418693;418694;418695;418696;418697;418698;418699;418700;418701;418702;418703 257066 257066 1 VTDDIGR Unmodified 774.38718 0.38718187 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 1 1 1 11.913 12.698 1;2 0.0015084 3528 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 128.75 49.301 1562800000 114030000 111570000 105570000 2097100 1886600 2050300 137820000 145090000 146110000 0 0 310590 123500000 109670000 96126000 0 0 0 151000000 162860000 140880000 4590200 3762800 3911800 22491 170 21780 418704;418705;418706;418707;418708;418709;418710;418711;418712;418713;418714;418715;418716;418717;418718;418719;418720;418721;418722;418723;418724;418725;418726;418727;418728;418729;418730;418731;418732;418733;418734 257067;257068;257069;257070;257071;257072;257073;257074;257075;257076;257077 257073 2 VTDDIGRR Unmodified 930.48829 0.4882929 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.698 11.514 2 0.0012615 2768 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.89 103.42 171960000 16864000 14505000 12732000 0 0 0 15173000 13780000 12826000 0 0 0 13275000 9086100 9699200 0 0 0 16539000 19583000 17892000 0 0 0 22492 170 21781 418735;418736;418737;418738;418739;418740;418741;418742;418743;418744;418745;418746 257078;257079;257080 257080 3 VTDEAQR Unmodified 817.393 0.39299553 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1 1 2 1 1 1 1 1 1 5.9246 6.7823 2 8.1154E-05 1055 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 141.98 105.4 8878100000 2845000000 2506000000 2444600000 3451100 5018600 4333000 349540 0 250470000 0 0 0 129460000 110730000 102720000 0 0 0 156670000 159750000 159510000 0 0 0 22493 1217 21782 418747;418748;418749;418750;418751;418752;418753;418754;418755;418756;418757;418758;418759;418760;418761;418762;418763;418764;418765 257081;257082;257083;257084;257085;257086;257087;257088;257089;257090;257091;257092;257093;257094;257095 257093 13 VTDEDLVVEIPR Unmodified 1383.7246 0.72456001 550 P0A9R4 fdx 2Fe-2S ferredoxin yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 39.447 37.772 2;3 1.1319E-16 17598 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 239.93 237.54 2348600000 163470000 158420000 148580000 0 0 1118200 190100000 178050000 179660000 0 0 0 198670000 182920000 167870000 0 0 0 258070000 270940000 250710000 0 0 0 22494 550 21783 418766;418767;418768;418769;418770;418771;418772;418773;418774;418775;418776;418777;418778;418779;418780;418781;418782;418783;418784;418785;418786;418787;418788;418789;418790 257096;257097;257098;257099;257100;257101;257102;257103;257104;257105;257106;257107;257108;257109;257110;257111;257112;257113;257114;257115 257112 20 VTDFSFELPESLIAHYPMPER Unmodified 2477.1937 0.19369737 341 P0A7F9 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.928 52.489 3 3.3017E-07 24731 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 105.38 102.04 370190000 35711000 32128000 39108000 0 0 0 22827000 23331000 21258000 0 0 0 27881000 23250000 25860000 0 0 0 38787000 40993000 39056000 0 0 0 22495 341 21784 418791;418792;418793;418794;418795;418796;418797;418798;418799;418800;418801;418802 257116;257117;257118;257119 257119 4 VTDGSGAAVQEGQGDLWVK Unmodified 1915.9276 0.92756992 1637 P61316 lolA Outer-membrane lipoprotein carrier protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 3 2 3 31.592 30.236 2;3 4.0244E-29 14471 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 266.89 266.89 1026800000 76954000 67620000 59193000 0 0 0 102090000 100950000 104440000 0 0 0 84651000 75917000 74113000 0 0 0 100880000 86898000 93108000 0 0 0 22496 1637 21785 418803;418804;418805;418806;418807;418808;418809;418810;418811;418812;418813;418814;418815;418816;418817;418818;418819;418820;418821;418822;418823;418824;418825;418826;418827;418828 257120;257121;257122;257123;257124;257125;257126;257127;257128;257129;257130;257131;257132;257133;257134;257135;257136;257137;257138 257121 19 VTDHPLVVALCQAYGK Unmodified 1769.9134 0.91344018 1578 P45748 tsaC Threonylcarbamoyl-AMP synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 34.323 33.002 3 2.912E-10 15103 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 109.84 105.08 146570000 18857000 19980000 15789000 0 0 0 0 0 0 0 0 0 0 13408000 15481000 0 0 0 22279000 18812000 21959000 0 0 0 22497 1578 21786 418829;418830;418831;418832;418833;418834;418835;418836 257139;257140;257141;257142;257143 257143 5 VTDIEPGLVGGTEFSNVR Unmodified 1888.9531 0.95305639 1545 P39831 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 40.69 39.004 2;3 2.0964E-29 18956 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 262.43 259.48 4700400000 469390000 383290000 388310000 791240 1479700 1311800 496320000 473990000 480010000 0 0 0 336340000 306820000 302250000 0 0 0 373530000 340890000 344580000 0 1090400 0 22498 1545 21787 418837;418838;418839;418840;418841;418842;418843;418844;418845;418846;418847;418848;418849;418850;418851;418852;418853;418854;418855;418856;418857;418858;418859;418860;418861;418862;418863;418864 257144;257145;257146;257147;257148;257149;257150;257151;257152;257153;257154;257155;257156;257157;257158;257159;257160;257161;257162;257163;257164;257165;257166;257167 257152 24 VTDIMGEIASASDEQSR Unmodified 1807.8258 0.82580697 151;76 P02942;P07017 tsr;tar Methyl-accepting chemotaxis protein I;Methyl-accepting chemotaxis protein II no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 39.867 38.287 2;3 6.6204E-19 18703 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 232.6 227.11 470440000 83439000 85631000 77867000 73507000 76755000 73241000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22499 76;151 21788 418865;418866;418867;418868;418869;418870;418871;418872;418873;418874;418875;418876 257168;257169;257170;257171;257172;257173;257174;257175;257176;257177;257178 257175 10 VTDKDYFGTGLGIAVR Unmodified 1710.8941 0.89408495 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 36.783 35.126 2;3 4.6141E-49 16944 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 274.59 270.7 3157000000 432580000 459350000 400360000 0 0 0 230420000 228680000 244790000 0 0 0 142070000 170580000 187590000 0 0 0 220500000 211370000 228720000 0 0 0 22500 1349 21789 418877;418878;418879;418880;418881;418882;418883;418884;418885;418886;418887;418888;418889;418890;418891;418892;418893;418894;418895;418896;418897;418898;418899;418900 257179;257180;257181;257182;257183;257184;257185;257186;257187;257188;257189;257190;257191;257192;257193;257194;257195;257196;257197;257198;257199;257200;257201;257202 257188 24 VTDKFGVPWMINVVK Unmodified 1731.9382 0.93819837 1123 P16681 phnB Protein PhnB yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 47.281 45.679 3 0.099488 16194 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 29.733 22.674 26092000 6025900 5953500 0 1825400 1951400 2812900 0 5199900 0 606920 1716400 0 0 0 0 0 0 0 0 0 0 0 0 0 22501 1123 21790 418901;418902;418903;418904;418905;418906;418907;418908 257203 257203 1 VTDPQYFGTGLGIAVRPDNK Unmodified 2147.1011 0.10111761 1350 P30860 artJ ABC transporter arginine-binding protein 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 37.602 35.975 2;3 1.1208E-14 17312 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 144.72 140.36 392640000 68021000 70318000 63456000 0 0 0 18693000 18119000 14284000 0 0 0 18562000 21534000 15304000 0 0 0 30797000 29090000 24462000 0 0 0 22502 1350 21791 418909;418910;418911;418912;418913;418914;418915;418916;418917;418918;418919;418920;418921;418922;418923 257204;257205;257206;257207;257208;257209;257210;257211;257212;257213;257214;257215 257208 12 VTDSLAVAR Unmodified 930.51345 0.51344502 79 P03007 dnaQ DNA polymerase III subunit epsilon yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.837 17.421 2 0.0043388 6238 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 84.568 32.781 102690000 9251400 7993700 9202400 0 0 0 8574400 9958300 8910800 2557200 0 0 5556400 5124300 5132900 0 535650 488620 9783900 10774000 8846400 0 0 0 22503 79 21792 418924;418925;418926;418927;418928;418929;418930;418931;418932;418933;418934;418935;418936;418937;418938 257216 257216 0 VTDTLNR Unmodified 817.42938 0.42938104 647 P0ABB8 mgtA Magnesium-transporting ATPase, P-type 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 11.696 12.584 2 0.00080871 3208 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 144.29 54.621 423040000 0 0 0 0 0 549820 0 0 0 0 0 0 123100000 137410000 134390000 0 0 0 0 27356000 0 0 0 240910 22504 647 21793 418939;418940;418941;418942;418943;418944 257217 257217 1 VTDVADRFPDR Unmodified 1289.6364 0.6364137 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 17.815 18.476 2;3 3.3602E-05 6401 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 147.75 112.49 1489700000 43905000 40213000 38587000 0 696400 440130 203010000 202680000 194060000 0 0 0 174950000 169150000 150510000 0 0 0 88598000 98881000 84039000 0 0 0 22505 213 21794 418945;418946;418947;418948;418949;418950;418951;418952;418953;418954;418955;418956;418957;418958;418959;418960;418961;418962;418963;418964;418965;418966;418967;418968;418969;418970 257218;257219;257220;257221;257222;257223;257224;257225;257226;257227;257228;257229 257229 10 VTDVEGK Unmodified 746.38103 0.38103386 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 1 2 2 2 1 1 1 7.9768 8.8285 2 0.0017557 2406 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 124.37 105.71 8090100000 0 1862700000 1440700000 2132800 3755100 2504000 156610000 121480000 124360000 7933500 0 0 419800000 418580000 313780000 0 0 0 1028400000 1033200000 1154200000 0 0 0 22506 264 21795 418971;418972;418973;418974;418975;418976;418977;418978;418979;418980;418981;418982;418983;418984;418985;418986;418987;418988;418989;418990;418991 257230;257231;257232;257233;257234;257235;257236;257237;257238;257239;257240;257241;257242;257243;257244;257245;257246;257247 257245 18 VTDVIDVTIAEVR Unmodified 1428.7824 0.78240924 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 45.481 44.041 2;3 2.441E-07 20591 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 181.44 108.21 418080000 44460000 39018000 34501000 0 0 0 39079000 32930000 28126000 0 0 0 30113000 28615000 22560000 0 0 0 39223000 39308000 40149000 0 0 0 22507 1348 21796 418992;418993;418994;418995;418996;418997;418998;418999;419000;419001;419002;419003;419004;419005;419006;419007;419008;419009;419010;419011;419012;419013;419014;419015 257248;257249;257250;257251;257252;257253;257254;257255;257256;257257;257258;257259;257260;257261 257260 9 VTDVLLASHENTAQIIDAR Unmodified 2065.0804 0.080382171 1364 P31142 sseA 3-mercaptopyruvate sulfurtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 2 2 2 34.14 32.752 2;3 1.0563E-55 15551 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 337.03 308.13 2853200000 263700000 287250000 258720000 0 0 0 280010000 302170000 254740000 0 0 0 203080000 186970000 211330000 0 1881200 0 198830000 209000000 195560000 0 0 0 22508 1364 21797 419016;419017;419018;419019;419020;419021;419022;419023;419024;419025;419026;419027;419028;419029;419030;419031;419032;419033;419034;419035;419036;419037;419038;419039;419040 257262;257263;257264;257265;257266;257267;257268;257269;257270;257271;257272;257273;257274;257275;257276;257277;257278;257279;257280;257281;257282;257283 257275 22 VTDYLQMGQEVPVK Unmodified 1605.8072 0.80724378 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 36.652 35.053 2;3 1.5356E-14 16182 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 191.79 177.63 3099700000 161890000 150800000 156720000 22373000 25248000 23135000 260410000 242610000 250500000 0 0 0 263720000 270920000 255580000 0 2891700 0 360180000 327650000 320230000 0 4824300 0 22509 107 21798 419041;419042;419043;419044;419045;419046;419047;419048;419049;419050;419051;419052;419053;419054;419055;419056;419057;419058;419059;419060;419061;419062;419063;419064;419065;419066;419067;419068;419069;419070;419071;419072 257284;257285;257286;257287;257288;257289;257290;257291;257292;257293;257294;257295;257296;257297;257298;257299 257298 16 VTEAFFSALPLMLK Unmodified 1565.8527 0.85273741 1944 P77804 ydgA Protein YdgA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 2 2 2 2 2 2 2 1 2 2 1 1 1 1 55.103 53.621 2;3 8.0506E-08 26705 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 136.02 132.17 990750000 0 4434900 0 7358400 12072000 6043500 76022000 65258000 56784000 128890000 152760000 148530000 40582000 41519000 27549000 0 0 0 52204000 56272000 44332000 23728000 25165000 21254000 22510 1944 21799 419073;419074;419075;419076;419077;419078;419079;419080;419081;419082;419083;419084;419085;419086;419087;419088;419089;419090;419091;419092;419093;419094;419095;419096;419097;419098;419099;419100;419101 257300;257301;257302;257303;257304;257305;257306;257307;257308;257309;257310;257311 257304 12 VTEGDIWINDQR Unmodified 1444.6947 0.69465686 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 31.793 30.433 2 9.6441E-40 14180 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 285 275.11 662220000 3790400 3741100 3014700 0 0 0 29552000 34710000 0 26946000 23277000 20471000 41422000 36119000 41275000 8338300 9918900 8154700 101370000 93483000 96814000 26252000 23684000 29885000 22511 1064 21800 419102;419103;419104;419105;419106;419107;419108;419109;419110;419111;419112;419113;419114;419115;419116;419117;419118;419119;419120;419121;419122 257312;257313;257314;257315;257316;257317;257318;257319;257320;257321;257322;257323;257324;257325;257326;257327;257328 257325 17 VTEKETTFNELMNQQA Unmodified 1881.8778 0.87784254 396 P0A850 tig Trigger factor yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.353 31.882 2 1.076E-09 12239 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 138.75 132.72 64297000 0 0 3979000 4038100 3913700 3452800 0 0 0 7253500 6529500 7401600 0 0 0 4562800 2302300 2556600 3489400 0 0 4801300 4697500 5319000 22512 396 21801 419123;419124;419125;419126;419127;419128;419129;419130;419131;419132;419133;419134;419135;419136 257329;257330;257331;257332;257333;257334;257335;257336;257337;257338;257339 257333 11 VTELLSLVGLGDKHDSYPSNLSGGQK Unmodified 2713.3923 0.39227384 1346 P30750 metN Methionine import ATP-binding protein MetN yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 42.605 40.516 4 0.00053006 16229 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 63.63 57.563 55339000 0 0 0 2362400 1976300 0 5165500 5995900 6721400 8027600 7484900 6362400 3571100 0 0 0 0 0 0 4576500 0 3095300 0 0 22513 1346 21802 419137;419138;419139;419140;419141;419142;419143;419144;419145;419146;419147 257340;257341;257342 257341 3 VTEMEPK Unmodified 832.40005 0.40005474 1064 P10907 ugpC sn-glycerol-3-phosphate import ATP-binding protein UgpC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.657 12.351 2 0.0067903 2764 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 94.006 90.153 440310000 0 0 0 1215600 1610400 1354800 26139000 24079000 28012000 12737000 10450000 11076000 32768000 28149000 32933000 0 0 0 64354000 67090000 64724000 12780000 10965000 9868300 22514 1064 21803 419148;419149;419150;419151;419152;419153;419154;419155;419156;419157;419158;419159;419160;419161;419162;419163;419164;419165 257343;257344;257345;257346;257347;257348 257343 6 VTEQGEMIR Unmodified 1061.5175 0.51754412 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.082 14.946 2 2.9813E-06 4522 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 176.41 158.43 1297500000 156540000 154180000 142120000 0 684340 0 132110000 138700000 112010000 0 0 0 59508000 53652000 62051000 0 0 0 108120000 89160000 88620000 0 0 0 22515 43 21804 419166;419167;419168;419169;419170;419171;419172;419173;419174;419175;419176;419177;419178 257349;257350;257351;257352;257353;257354 257354 6 VTESAALAGYK Unmodified 1108.5764 0.57643921 509 P0A9C9 glpX Fructose-1,6-bisphosphatase 1 class 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.978 19.467 2 0.00015024 7030 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 110.87 99.65 395560000 18003000 17594000 12760000 0 0 0 32723000 32306000 37286000 0 0 0 45844000 34207000 37756000 0 0 0 43268000 44732000 37612000 841880 625190 0 22516 509 21805 419179;419180;419181;419182;419183;419184;419185;419186;419187;419188;419189;419190;419191;419192 257355;257356;257357;257358;257359 257358 4 VTEYLTAIEDFTR Unmodified 1556.7722 0.77223848 54 P00936 cyaA Adenylate cyclase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 50.532 49.129 2 8.5431E-05 23931 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 103.22 99.203 36502000 8890700 0 7417800 0 1360300 0 0 4291100 0 0 0 0 0 0 0 0 0 0 4325700 4275700 5940900 0 0 0 22517 54 21806 419193;419194;419195;419196;419197;419198;419199 257360 257360 0 VTFHTNHGDIVIK Unmodified 1479.7834 0.78341229 1222 P23869 ppiB Peptidyl-prolyl cis-trans isomerase B yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 23.087 22.442 3 0.15442 9967 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 14.307 2.6937 134140000 18132000 20444000 20675000 0 0 0 11588000 10447000 9722800 0 0 0 6662900 4646100 4903400 0 0 0 6169900 7863500 9560400 0 3320200 0 22518 1222 21807 419200;419201;419202;419203;419204;419205;419206;419207;419208;419209;419210;419211;419212 257361;257362;257363 257361 3 VTFKEDNSLPVR Unmodified 1403.7409 0.74087877 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 2 1 1 1 1 1 21.829 21.801 2;3 3.2758E-06 9039 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 145.46 126.14 62667000 5197300 4280600 0 2575800 3074800 0 9202200 8879800 7454200 0 0 0 0 0 3921400 0 0 0 6423500 6119800 5537300 0 0 0 22519 1437 21808 419213;419214;419215;419216;419217;419218;419219;419220;419221;419222;419223;419224 257364;257365;257366 257366 3 VTFLGFDAATEAR Unmodified 1396.6987 0.69867961 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.639 42.124 2 3.9224E-07 19794 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 177.57 168.21 837300000 91931000 84577000 68856000 0 0 0 109910000 101530000 98975000 0 0 0 48287000 40844000 42542000 0 0 0 51427000 48242000 50189000 0 0 0 22520 468 21809 419225;419226;419227;419228;419229;419230;419231;419232;419233;419234;419235;419236 257367;257368;257369;257370;257371;257372;257373;257374;257375;257376;257377 257375 7 VTFLLAVGGGSVLDGTK Unmodified 1632.9087 0.90867238 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.78 50.533 2 7.1584E-10 24534 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 124.48 122.26 129900000 5946800 6464900 5448700 0 0 0 19128000 14890000 14491000 0 0 0 13633000 10240000 10343000 0 0 0 10587000 8554100 10178000 0 0 0 22521 1959 21810 419237;419238;419239;419240;419241;419242;419243;419244;419245;419246;419247;419248 257378;257379;257380 257379 2 VTFLPINQESAATK Unmodified 1517.809 0.80895834 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.407 33.85 2 3.4833E-08 16138 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.28 141.75 501960000 39072000 39693000 36188000 0 0 0 49834000 40802000 45687000 0 0 0 30890000 32564000 34534000 0 0 0 51077000 49534000 52090000 0 0 0 22522 1900 21811 419249;419250;419251;419252;419253;419254;419255;419256;419257;419258;419259;419260 257381;257382;257383;257384;257385;257386;257387 257385 4 VTFSTPDGDVTAVNDLNFSLR Unmodified 2267.107 0.10699085 1807 P76027 oppD Oligopeptide transport ATP-binding protein OppD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 51.316 50.449 2 1.4448E-06 18255 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 98.694 88.915 15335000 0 0 0 3664000 3749800 3579400 0 0 0 0 0 1678100 0 0 0 1213000 1451100 0 0 0 0 0 0 0 22523 1807 21812 419261;419262;419263;419264;419265;419266 257388;257389;257390 257389 3 VTGATDLSNK Unmodified 1004.5138 0.51383895 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.055 12.719 2 8.2386E-17 3356 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 226.64 199.34 2347600000 160760000 181350000 165280000 2444500 2107100 2259800 201150000 206370000 167420000 6498300 6416400 6217600 208410000 187600000 162740000 0 0 1927900 229480000 215710000 222880000 3600500 4003100 2936500 22524 59 21813 419267;419268;419269;419270;419271;419272;419273;419274;419275;419276;419277;419278;419279;419280;419281;419282;419283;419284;419285;419286;419287;419288 257391;257392;257393;257394;257395;257396;257397;257398;257399;257400;257401;257402;257403;257404;257405;257406;257407;257408;257409 257407 13 VTGETGEAIDDLR Unmodified 1374.6627 0.66268803 418 P0A8C4 ygfB UPF0149 protein YgfB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.554 23.568 2 2.72E-17 9911 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 205.53 180.76 1690900000 169490000 150680000 142850000 1309300 1227200 952710 166320000 173210000 157000000 4988800 4838000 4759600 112350000 95142000 89509000 0 1507800 0 130550000 144790000 135380000 0 2553800 1544300 22525 418 21814 419289;419290;419291;419292;419293;419294;419295;419296;419297;419298;419299;419300;419301;419302;419303;419304;419305;419306;419307;419308;419309 257410;257411;257412;257413;257414;257415;257416;257417;257418;257419;257420;257421 257420 12 VTGETNTDDLSPAPDAWSR Unmodified 2030.9181 0.91812745 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 32.708 31.315 2 1.9492E-22 14834 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 186.56 186.56 73380000 9095600 12816000 10434000 0 0 0 3348300 4227200 3635100 0 0 0 4186100 2941700 4239700 0 0 0 5221600 6299200 6935500 0 0 0 22526 1444 21815 419310;419311;419312;419313;419314;419315;419316;419317;419318;419319;419320;419321 257422;257423 257422 1 VTGETNTDDLSPAPDAWSRPDIPLHALAMLK Unmodified 3330.6554 0.65544117 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS 3 3 3 1 2 2 3 3 2 1 1 1 3 3 3 1 1 3 3 3 1 1 1 50.65 49.353 3;4;5 1.1084E-17 24108 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 141.78 136.67 11110000000 1613000000 1627300000 1256500000 19708000 18802000 21635000 562890000 572160000 490520000 8174700 10982000 7168500 623470000 652270000 576390000 9926900 0 9420400 963370000 1054100000 968550000 13725000 12842000 17529000 22527 1444 21816 419322;419323;419324;419325;419326;419327;419328;419329;419330;419331;419332;419333;419334;419335;419336;419337;419338;419339;419340;419341;419342;419343;419344;419345;419346;419347;419348;419349;419350;419351;419352;419353;419354;419355;419356;419357;419358;419359;419360;419361;419362;419363;419364;419365;419366;419367;419368;419369 257424;257425;257426;257427;257428;257429;257430;257431;257432;257433;257434;257435;257436;257437;257438 257433 15 VTGIVEHK Unmodified 881.49707 0.49706667 720 P0ACC7 glmU Bifunctional protein GlmU;UDP-N-acetylglucosamine pyrophosphorylase;Glucosamine-1-phosphate N-acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.889 11.705 2 0.0016374 2911 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.19 54.919 802450000 66427000 58946000 60723000 0 0 0 58115000 50669000 57956000 0 0 0 76221000 67242000 59628000 0 0 0 76820000 82773000 86926000 0 0 0 22528 720 21817 419370;419371;419372;419373;419374;419375;419376;419377;419378;419379;419380;419381 257439;257440;257441;257442;257443;257444;257445;257446;257447;257448;257449 257446 11 VTGQALTVNEK Unmodified 1158.6245 0.62445203 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.647 15.319 2 2.0682E-34 5017 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 271.39 226.67 1475100000 106120000 98294000 80861000 8358500 7951400 8198500 82556000 87770000 80305000 0 0 0 107990000 107610000 99069000 0 913950 0 217300000 183000000 176570000 8298300 6873800 7070700 22529 698 21818 419382;419383;419384;419385;419386;419387;419388;419389;419390;419391;419392;419393;419394;419395;419396;419397;419398;419399;419400;419401;419402 257450;257451;257452;257453;257454;257455;257456;257457;257458;257459;257460;257461;257462;257463;257464;257465;257466 257464 17 VTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANR Unmodified 3691.8992 0.89919369 698 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 51.18 49.787 4 5.1904E-08 17947 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 85.203 83.864 76173000 0 0 0 8192900 9310800 8543100 0 0 0 5633600 7020100 10105000 0 0 0 0 0 0 0 0 0 10369000 7217000 9781000 22530 698 21819 419403;419404;419405;419406;419407;419408;419409;419410;419411 257467;257468;257469;257470;257471 257470 5 VTGWAAHIIEQR Unmodified 1379.731 0.73098279 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 27.957 26.87 2;3 8.0474E-17 12155 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 209.97 195.76 360530000 133820000 121100000 101830000 1162900 1041300 1565300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22531 1374 21820 419412;419413;419414;419415;419416;419417;419418;419419;419420 257472;257473;257474;257475;257476;257477 257475 6 VTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDK Unmodified 3635.7162 0.71620352 968 P0AFX0 hpf Ribosome hibernation promoting factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 1 1 2 1 2 2 2 2 1 1 1 1 1 1 1 1 1 41.916 40.01 4;5 5.8266E-14 19969 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 115.74 113.83 517730000 82294000 51941000 34451000 1719200 2588700 1256000 93898000 79035000 54076000 6207400 4516200 4652100 15178000 11533000 16351000 0 0 0 21185000 19912000 14536000 0 2401300 0 22532 968 21821 419421;419422;419423;419424;419425;419426;419427;419428;419429;419430;419431;419432;419433;419434;419435;419436;419437;419438;419439;419440;419441;419442;419443;419444;419445;419446 257478;257479;257480;257481;257482;257483;257484;257485;257486;257487 257478 10 VTIAPDDER Unmodified 1014.4982 0.49818889 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 2 1 2 1 1 1 1 2 1 2 15.078 15.84 2 5.8572E-05 5029 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 146.81 146.81 1873200000 166200000 173530000 165260000 0 2727900 3001000 182190000 173050000 164250000 4305900 0 0 124090000 105740000 110100000 0 0 0 179870000 164590000 154250000 0 0 0 22533 784 21822 419447;419448;419449;419450;419451;419452;419453;419454;419455;419456;419457;419458;419459;419460;419461;419462;419463;419464;419465;419466 257488;257489;257490;257491;257492;257493;257494;257495;257496;257497 257497 10 VTIDFTGSVDGEEFEGGK Unmodified 1885.8582 0.85815295 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 8 5 4 5 3 2 6 6 3 5 4 46.712 45.311 2 1.6012E-55 20844 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 286.61 277.41 759720000 70289000 111640000 64148000 0 0 0 49873000 52833000 39488000 0 0 0 38540000 73136000 52857000 0 0 0 68394000 72934000 65587000 0 0 0 22534 396 21823 419467;419468;419469;419470;419471;419472;419473;419474;419475;419476;419477;419478;419479;419480;419481;419482;419483;419484;419485;419486;419487;419488;419489;419490;419491;419492;419493;419494;419495;419496;419497;419498;419499;419500;419501;419502;419503;419504;419505;419506;419507;419508;419509;419510;419511;419512;419513;419514;419515;419516;419517;419518;419519;419520;419521;419522;419523 257498;257499;257500;257501;257502;257503;257504;257505;257506;257507;257508;257509;257510;257511;257512;257513;257514;257515;257516;257517;257518;257519;257520;257521;257522;257523;257524;257525;257526;257527;257528;257529;257530;257531;257532;257533;257534;257535;257536;257537;257538;257539;257540;257541;257542;257543;257544;257545;257546;257547;257548;257549;257550;257551;257552;257553;257554;257555;257556;257557;257558;257559;257560;257561;257562;257563;257564;257565;257566;257567;257568;257569;257570;257571;257572;257573;257574;257575;257576;257577;257578;257579;257580;257581;257582;257583;257584;257585;257586;257587;257588;257589;257590 257505 84 VTIEGWNGPVEIDQIK Unmodified 1796.9309 0.93086439 424 P0A8F0 upp Uracil phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 47.52 46.002 2;3 1.0709E-30 22324 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 234.63 217.47 6210300000 693960000 634370000 593450000 631290 1914200 2582100 263600000 250840000 269710000 8144900 7921700 5648700 568480000 507650000 492500000 0 0 0 642320000 624400000 642160000 0 0 0 22535 424 21824 419524;419525;419526;419527;419528;419529;419530;419531;419532;419533;419534;419535;419536;419537;419538;419539;419540;419541;419542;419543;419544;419545;419546;419547;419548;419549;419550;419551;419552;419553;419554;419555;419556;419557 257591;257592;257593;257594;257595;257596;257597;257598;257599;257600;257601;257602;257603;257604;257605;257606;257607;257608;257609;257610;257611;257612;257613;257614;257615;257616 257610 26 VTIEYVMLDHVNDGTEHAHQLAELLK Unmodified 2974.4859 0.48585664 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.507 44.881 4 0.00072749 21764 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 62.1 58.831 317960000 29466000 29686000 21850000 0 0 0 27617000 23460000 15518000 4213400 5602200 9230000 16830000 11936000 14117000 0 0 0 42330000 33406000 28166000 0 4531800 0 22536 1451 21825 419558;419559;419560;419561;419562;419563;419564;419565;419566;419567;419568;419569;419570;419571;419572;419573 257617 257617 1 VTIHGWAYGIHDGLLR Unmodified 1806.9529 0.95293723 1639 P61517 can Carbonic anhydrase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 1 1 3 3 3 3 3 3 3 3 3 1 34.73 33.257 2;3;4 1.385E-19 15869 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 202.18 190.96 3245800000 422850000 394460000 329880000 2042200 1301300 1543800 242060000 213710000 201550000 0 0 0 198810000 183970000 155200000 0 0 0 272990000 318980000 304790000 0 0 1668800 22537 1639 21826 419574;419575;419576;419577;419578;419579;419580;419581;419582;419583;419584;419585;419586;419587;419588;419589;419590;419591;419592;419593;419594;419595;419596;419597;419598;419599;419600;419601;419602;419603;419604;419605;419606;419607;419608;419609;419610;419611;419612;419613 257618;257619;257620;257621;257622;257623;257624;257625;257626;257627;257628;257629;257630;257631;257632;257633;257634 257629 17 VTIHTAR Unmodified 796.45554 0.45553621 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.655 11.328 2 0.00044763 2534 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 153.88 124.04 3234300000 545950000 453970000 490910000 4633900 0 0 141910000 122850000 113730000 5872800 0 0 230670000 183590000 149330000 4782300 0 0 273520000 253560000 248850000 6007100 0 4194800 22538 374 21827 419614;419615;419616;419617;419618;419619;419620;419621;419622;419623;419624;419625;419626;419627;419628;419629;419630 257635;257636;257637;257638;257639;257640 257638 6 VTIHTARPGIVIGK Unmodified 1460.8827 0.8827324 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 3 3 3 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 18.345 18.693 2;3;4 6.6274E-06 5738 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 117.98 116.94 1276700000 128690000 82503000 23437000 46931000 53536000 51543000 33045000 25732000 25652000 72709000 71314000 65050000 36861000 27960000 25550000 20440000 48095000 34197000 91776000 72568000 65846000 50697000 58144000 64373000 22539 374 21828 419631;419632;419633;419634;419635;419636;419637;419638;419639;419640;419641;419642;419643;419644;419645;419646;419647;419648;419649;419650;419651;419652;419653;419654;419655;419656;419657;419658;419659;419660;419661;419662;419663;419664;419665;419666;419667;419668;419669;419670;419671;419672;419673;419674;419675;419676;419677;419678;419679;419680;419681;419682;419683;419684;419685;419686;419687;419688;419689;419690;419691;419692;419693;419694;419695;419696;419697 257641;257642;257643;257644;257645;257646;257647;257648;257649;257650;257651;257652;257653;257654;257655;257656;257657;257658;257659;257660;257661;257662;257663;257664;257665;257666;257667;257668;257669;257670;257671;257672;257673;257674;257675;257676;257677;257678;257679;257680;257681;257682;257683;257684;257685;257686 257653 46 VTIMMPHPER Unmodified 1209.5998 0.59983396 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 3 2 2 1 1 1 2 1 1 1 1 1 1 1 22.015 21.741 2;3 5.8989E-05 9389 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 134.26 103.69 561620000 105790000 97189000 94051000 0 0 0 16963000 21010000 7518300 0 0 0 11399000 10093000 22420000 51044000 33310000 33535000 12473000 12999000 12473000 19352000 0 0 22540 1107 21829 419698;419699;419700;419701;419702;419703;419704;419705;419706;419707;419708;419709;419710;419711;419712;419713;419714;419715;419716;419717;419718;419719;419720;419721 257687;257688;257689;257690;257691;257692;257693;257694;257695;257696;257697;257698;257699;257700;257701;257702;257703;257704 257700 18 VTINGAHNCR Unmodified 1140.5458 0.54582455 416 P0A8B5 ybaB Nucleoid-associated protein YbaB yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.762 11.374 2;3 1.84E-06 2209 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 170.66 161.45 588330000 34012000 30553000 0 26324000 28393000 20829000 0 0 0 64541000 67868000 58645000 0 18619000 15520000 51951000 14933000 12900000 30330000 12608000 28893000 19795000 27826000 23787000 22541 416 21830 419722;419723;419724;419725;419726;419727;419728;419729;419730;419731;419732;419733;419734;419735;419736;419737;419738;419739;419740;419741;419742;419743 257705;257706;257707;257708;257709;257710;257711;257712;257713;257714;257715;257716;257717;257718;257719;257720;257721 257706 17 VTIPGSDNEYYK Unmodified 1384.6511 0.65106071 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.63 25.513 2 3.3244E-05 11446 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 112.75 108.97 147310000 7619400 0 0 0 0 0 4246500 5607500 7563200 6728300 7137700 4984400 5932300 10065000 8244100 3057100 1905800 1997600 19680000 19056000 19349000 4619600 4832000 4680800 22542 486 21831 419744;419745;419746;419747;419748;419749;419750;419751;419752;419753;419754;419755;419756;419757;419758;419759;419760;419761;419762 257722;257723;257724;257725;257726;257727;257728;257729;257730;257731 257727 7 VTIPVHPIIRPR Unmodified 1396.8667 0.86668841 1715 P67826 cutC Copper homeostasis protein CutC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.054 22.421 4 0.00077436 9149 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 68.355 67.567 262180000 21118000 23719000 19092000 0 0 0 24894000 24212000 21328000 0 0 0 24558000 18462000 19551000 0 0 0 20184000 20960000 24097000 0 0 0 22543 1715 21832 419763;419764;419765;419766;419767;419768;419769;419770;419771;419772;419773;419774 257732;257733;257734;257735;257736;257737;257738;257739;257740;257741;257742;257743 257742 12 VTITIAADSIETAVK Unmodified 1530.8505 0.8504888 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 1 42.127 40.384 2;3 1.0759E-11 18774 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 172.13 165.89 1658400000 78608000 57033000 55115000 8747400 6590300 8330900 135900000 142350000 119210000 23194000 24226000 19727000 157420000 130190000 119920000 5014300 5381300 5041300 175560000 177770000 174620000 10576000 9156900 8734000 22544 396 21833 419775;419776;419777;419778;419779;419780;419781;419782;419783;419784;419785;419786;419787;419788;419789;419790;419791;419792;419793;419794;419795;419796;419797;419798;419799;419800;419801;419802;419803;419804;419805;419806;419807;419808;419809;419810;419811;419812;419813;419814;419815;419816;419817;419818 257744;257745;257746;257747;257748;257749;257750;257751;257752;257753;257754;257755;257756;257757;257758;257759;257760;257761;257762;257763;257764;257765;257766;257767;257768;257769;257770;257771;257772;257773;257774;257775;257776;257777;257778;257779;257780;257781;257782;257783;257784;257785;257786;257787;257788 257786 45 VTITPHVAAITR Unmodified 1277.7456 0.74557022 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 21.945 21.996 3 0.011714 8860 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 53.034 49.906 72960000 13857000 9839400 8378500 0 0 0 5748300 8284200 0 0 0 0 4273200 0 4647200 0 0 0 5626700 6402000 5904100 0 0 0 22545 1788 21834 419819;419820;419821;419822;419823;419824;419825;419826;419827;419828 257789 257789 1 VTITPHVAAITRPAEAVEYISR Unmodified 2393.3067 0.30669371 1788 P75913 ghrA Glyoxylate/hydroxypyruvate reductase A yes yes 0 0 1 By matching By MS/MS By matching By matching 1 1 1 1 35.558 34.028 3 0.0036 16303 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 52.541 49.443 32400000 10093000 11002000 6780300 0 0 0 4524500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22546 1788 21835 419829;419830;419831;419832 257790 257790 1 VTKPEAGHFAK Unmodified 1183.635 0.63495714 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 10.901 11.507 2;3 3.197E-05 2758 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 137.98 108.83 7032200000 983100000 857570000 616350000 57960000 53898000 47140000 310940000 278160000 276230000 132740000 114780000 131020000 331050000 340350000 335100000 153050000 5667000 69061000 448320000 539150000 573400000 134560000 129050000 113540000 22547 1621 21836 419833;419834;419835;419836;419837;419838;419839;419840;419841;419842;419843;419844;419845;419846;419847;419848;419849;419850;419851;419852;419853;419854;419855;419856;419857;419858;419859;419860;419861;419862;419863;419864;419865;419866;419867;419868;419869;419870;419871;419872;419873;419874;419875;419876;419877;419878;419879 257791;257792;257793;257794;257795;257796;257797;257798;257799;257800;257801;257802;257803;257804;257805;257806;257807;257808;257809;257810;257811;257812;257813;257814;257815;257816;257817;257818;257819;257820;257821;257822;257823;257824;257825;257826;257827;257828 257796 38 VTKPVFVR Unmodified 944.58074 0.58073672 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.269 15.07 2 0.002611 5007 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 108.24 103.88 1481600000 103640000 91109000 94192000 0 0 0 172790000 156350000 139300000 0 0 0 116900000 97832000 101890000 0 0 0 111950000 136300000 159330000 0 0 0 22548 1294 21837 419880;419881;419882;419883;419884;419885;419886;419887;419888;419889;419890;419891 257829;257830;257831;257832;257833;257834;257835;257836;257837;257838;257839 257829 11 VTLAPEMVPAEVISK Unmodified 1582.864 0.86403038 904 P0AF18 nagA N-acetylglucosamine-6-phosphate deacetylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.804 42.289 2 2.0243E-08 20455 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 138.24 138.24 707380000 99264000 85920000 84008000 0 0 0 61857000 50301000 55105000 0 0 0 47261000 38911000 42252000 0 0 0 51290000 46775000 44435000 0 0 0 22549 904 21838 419892;419893;419894;419895;419896;419897;419898;419899;419900;419901;419902;419903 257840;257841;257842;257843;257844;257845;257846;257847;257848;257849;257850;257851 257845 12 VTLCESAEEVLAFYHK Unmodified 1894.9135 0.91349976 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By MS/MS 1 1 46.267 46.344 3 0.051936 16707 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 36.597 26.315 18608000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10492000 8115800 0 0 0 0 0 0 0 22550 1102 21839 419904;419905 257852 257852 1 VTLDTATYVPIDDDHKWVVLGR Unmodified 2512.2962 0.29618861 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.669 42.17 4 1.6115E-06 15029 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 90.316 84.154 76126000 0 0 0 2501800 2717700 2844400 0 0 0 11173000 9332000 7136100 0 0 0 5753000 8148200 7295700 0 0 0 7347900 5240100 6637300 22551 486 21840 419906;419907;419908;419909;419910;419911;419912;419913;419914;419915;419916;419917 257853;257854;257855;257856;257857;257858;257859;257860 257855 8 VTLELGGK Unmodified 815.47527 0.4752686 1948 P80668 feaB Phenylacetaldehyde dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 21.785 21.877 2 0.16643 9047 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 46.426 26.579 31556000 7696800 7395000 5509000 0 0 0 4454400 3462500 3038100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22552 1948 21841 419918;419919;419920;419921;419922;419923 257861 257861 0 VTLELSGCPIDADGFCPMDK Unmodified 2223.985 0.9850265 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 48.975 47.628 2 9.9129E-30 23100 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 258.6 255.81 204290000 54488000 56971000 52889000 0 0 0 6648300 5574300 8116400 0 0 0 0 3170200 3980600 0 0 0 4287300 3905900 4259800 0 0 0 22553 1160 21842 419924;419925;419926;419927;419928;419929;419930;419931;419932;419933;419934 257862;257863;257864 257864 3 VTLELSGCPIDADGFCPMDKFDSVLNEAVK Unmodified 3326.5509 0.55090102 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 54.331 52.876 3 2.7496E-23 26218 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 168.22 166.43 361930000 125910000 111530000 111670000 0 0 0 12827000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22554 1160 21843 419935;419936;419937;419938 257865;257866;257867 257865 3 VTLEPLER Unmodified 955.53385 0.53384611 383 P0A7Z4 rpoA DNA-directed RNA polymerase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 2 2 1 1 1 2 9 8 7 1 1 1 5 3 2 28.741 27.915 2 0.00022699 9301 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 151.29 104.92 88798000000 972000000 891990000 899760000 52778000 56827000 45567000 614260000 610570000 583970000 3972000000 4160200000 4049400000 742050000 689720000 709230000 14943000000 16586000000 18544000000 884120000 850480000 802640000 6070200000 5385700000 5682100000 22555 383 21844 419939;419940;419941;419942;419943;419944;419945;419946;419947;419948;419949;419950;419951;419952;419953;419954;419955;419956;419957;419958;419959;419960;419961;419962;419963;419964;419965;419966;419967;419968;419969;419970;419971;419972;419973;419974;419975;419976;419977;419978;419979;419980;419981;419982;419983;419984;419985;419986;419987;419988;419989;419990;419991;419992;419993;419994 257868;257869;257870;257871;257872;257873;257874;257875;257876;257877;257878;257879;257880;257881;257882;257883;257884;257885;257886;257887;257888;257889;257890;257891;257892;257893;257894;257895;257896;257897;257898;257899;257900;257901;257902;257903;257904;257905;257906;257907;257908;257909;257910;257911;257912;257913;257914;257915;257916;257917;257918;257919;257920;257921;257922;257923;257924;257925;257926;257927;257928;257929;257930;257931;257932;257933;257934;257935;257936;257937;257938;257939;257940;257941;257942;257943 257909 76 VTLLTPGMEK Unmodified 1087.5947 0.59473181 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.146 27.838 2 0.00014792 12371 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 126.07 114.71 458640000 4413100 0 5059900 0 0 0 91373000 92067000 93889000 0 1587300 1887000 50847000 50242000 54713000 0 0 487210 3677200 2925900 5469900 0 0 0 22556 520 21845 419995;419996;419997;419998;419999;420000;420001;420002;420003;420004;420005;420006;420007;420008 257944;257945;257946 257946 3 VTLNAPGR Unmodified 826.4661 0.4661009 1145 P17952 murC UDP-N-acetylmuramate--L-alanine ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 14.892 15.489 2 0.00042382 5213 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.92 124.7 506570000 44153000 57638000 53408000 1578500 2002500 1145200 0 45822000 45654000 3591900 3842300 3537800 31408000 25202000 27524000 0 0 0 49545000 57363000 49859000 1746100 538770 1012700 22557 1145 21846 420009;420010;420011;420012;420013;420014;420015;420016;420017;420018;420019;420020;420021;420022;420023;420024;420025;420026;420027;420028;420029;420030;420031 257947;257948;257949;257950;257951;257952;257953;257954;257955;257956;257957;257958;257959 257949 12 VTLPEFER Unmodified 989.5182 0.51819605 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.52 29.958 2 0.00071397 13483 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 126.28 91.454 903050000 59547000 62016000 60205000 0 0 0 84288000 97962000 70848000 6837700 5180600 3800600 63945000 67169000 61065000 0 0 0 96773000 83833000 79584000 0 0 0 22558 1880 21847 420032;420033;420034;420035;420036;420037;420038;420039;420040;420041;420042;420043;420044;420045;420046 257960;257961;257962;257963;257964;257965;257966;257967;257968;257969 257967 6 VTLSGTEGALDSLR Unmodified 1417.7413 0.7412727 1474 P37613 panM PanD maturation factor yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 35.652 34.023 2 3.8311E-11 16217 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 172.34 124.51 419490000 0 0 0 1417000 785820 0 49842000 42750000 41679000 0 0 0 43293000 38124000 37136000 0 0 0 47287000 57323000 59853000 0 0 0 22559 1474 21848 420047;420048;420049;420050;420051;420052;420053;420054;420055;420056;420057 257970;257971;257972;257973;257974;257975;257976;257977;257978 257975 9 VTLSTSGVVPALDK Unmodified 1385.7766 0.77659558 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.329 34.623 2 0.00039761 16730 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 80.979 76.825 217900000 20736000 13954000 14138000 1101800 926930 1230200 13859000 12511000 12784000 6810000 6210000 5174200 23709000 0 23605000 0 1265000 0 13289000 15569000 21523000 2984800 2957500 3567600 22560 1451 21849 420058;420059;420060;420061;420062;420063;420064;420065;420066;420067;420068;420069;420070;420071;420072;420073;420074;420075;420076;420077;420078 257979;257980;257981;257982;257983 257980 0 VTLTLRPAPANTGVIYR Unmodified 1841.0523 0.052316927 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.094 30.611 3 0.057017 10477 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 36.029 34.337 343100000 37007000 39996000 31548000 2715900 0 2781800 22396000 23428000 18949000 3907100 0 0 14814000 18068000 20254000 0 0 0 37528000 29301000 36776000 3630800 0 0 22561 303 21850 420079;420080;420081;420082;420083;420084;420085;420086;420087;420088;420089;420090;420091;420092;420093;420094 257984 257984 1 VTMAELDDAAR Unmodified 1190.5601 0.56013721 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 26.791 25.615 2 1.6219E-05 11538 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 140.45 114.55 479840000 0 0 0 0 0 0 104270000 0 93005000 0 0 0 36293000 40695000 38192000 0 0 0 60162000 57527000 49700000 0 0 0 22562 1421 21851 420095;420096;420097;420098;420099;420100;420101;420102 257985;257986;257987;257988;257989;257990 257987 6 VTMQNLNDR Unmodified 1089.5237 0.52369213 13;6;12;7;22 CON__P13645;CON__Q7Z3Y7;CON__Q7Z3Y8;CON__Q148H6;CON__Q7Z3Z0;CON__P02535-1;CON__P02533;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08779;CON__Q7Z3Y9 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 15.984 16.324 2 5.2938E-06 4447 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 173.23 88.171 883710000 0 0 0 33111000 33491000 29326000 0 0 0 55477000 52809000 49301000 2490000 0 0 54453000 34407000 40346000 0 0 0 155940000 172100000 170460000 + 22563 13;7;6;12;22 21852 420103;420104;420105;420106;420107;420108;420109;420110;420111;420112;420113;420114;420115 257991;257992;257993;257994;257995;257996;257997;257998;257999;258000;258001;258002 257999 12 VTMQNLNDR Oxidation (M) 1105.5186 0.51860675 13;6;12;7;22 CON__P13645;CON__Q7Z3Y7;CON__Q7Z3Y8;CON__Q148H6;CON__Q7Z3Z0;CON__P02535-1;CON__P02533;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08779;CON__Q7Z3Y9 no no 0 1 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 11.742 11.87 2 0.00073265 2489 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 101.64 86.707 33539000 0 0 0 0 0 0 0 0 0 4711300 0 0 0 0 0 0 2526000 3375100 0 0 0 11462000 11465000 0 + 22564 13;7;6;12;22 21852 420116;420117;420118;420119;420120;420121 258003;258004;258005 258005 0 3 VTMQNLNDRLASYLDKVR Unmodified 2135.1157 0.11572182 13;6;12 CON__P13645;CON__P02533;CON__P08779 no no 0 0 2 By MS/MS By matching By MS/MS 1 1 1 40.643 38.923 4 0.0013142 13738 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 62.203 58.814 7376800 0 0 0 2868600 2343600 2164600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 22565 13;6;12 21853 420122;420123;420124 258006;258007 258006 2 VTNLTDYGCFVEIEEGVEGLVHVSEMDWTNK Unmodified 3569.6331 0.63305075 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 2 2 3 2 2 2 3 2 2 2 2 2 3 2 2 2 2 2 1 1 2 2 1 2 55.863 54.617 3;4 4.6596E-55 25816 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 241.57 240.08 3313500000 102240000 468890000 445800000 25304000 35940000 30978000 211660000 155700000 201730000 49840000 44092000 45100000 252700000 259480000 258700000 27280000 52896000 56244000 71918000 73683000 372530000 25637000 19128000 26036000 22566 990 21854 420125;420126;420127;420128;420129;420130;420131;420132;420133;420134;420135;420136;420137;420138;420139;420140;420141;420142;420143;420144;420145;420146;420147;420148;420149;420150;420151;420152;420153;420154;420155;420156;420157;420158;420159;420160;420161;420162;420163;420164;420165;420166;420167;420168;420169;420170;420171;420172 258008;258009;258010;258011;258012;258013;258014;258015;258016;258017;258018;258019;258020;258021;258022;258023;258024;258025;258026;258027;258028;258029;258030;258031;258032 258030 25 VTNYFEFIAR Unmodified 1258.6346 0.63462279 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.316 43.901 2 8.6369E-09 21881 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 185.58 177.12 813550000 128060000 124720000 132980000 0 0 0 80265000 69426000 63319000 0 0 0 28437000 26386000 25417000 0 0 0 49263000 42281000 43001000 0 0 0 22567 218 21855 420173;420174;420175;420176;420177;420178;420179;420180;420181;420182;420183;420184 258033;258034;258035;258036;258037;258038;258039;258040;258041;258042;258043 258033 11 VTPKGETQLTPEEK Unmodified 1555.8094 0.80935227 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 13.008 13.296 2;3 1.7475E-11 3255 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 201 182.33 2904700000 0 0 0 2090600 1968600 3103300 0 0 0 130860000 118350000 99411000 0 0 0 519880000 479860000 581350000 0 0 0 313450000 334520000 319800000 22568 463 21856 420185;420186;420187;420188;420189;420190;420191;420192;420193;420194;420195;420196;420197;420198;420199;420200;420201;420202;420203;420204;420205 258044;258045;258046;258047;258048;258049;258050;258051;258052;258053;258054;258055;258056;258057;258058;258059;258060;258061 258053 18 VTPLGTLR Unmodified 855.5178 0.51780212 1087 P13033 glpB Anaerobic glycerol-3-phosphate dehydrogenase subunit B yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 23.905 22.946 2 0.00069413 9747 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 127.12 91.484 1680700000 8312200 0 7528100 0 0 0 199230000 185300000 187680000 255880000 182100000 156180000 88845000 81752000 70709000 0 0 0 50526000 46280000 47237000 36936000 35602000 40623000 22569 1087 21857 420206;420207;420208;420209;420210;420211;420212;420213;420214;420215;420216;420217;420218;420219;420220;420221;420222;420223;420224;420225 258062;258063;258064;258065;258066;258067;258068;258069;258070;258071;258072 258062 10 VTPLTAQETLPLVQCFGR Unmodified 2029.0666 0.066646362 1076 P12281 moeA Molybdopterin molybdenumtransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 2 2 2 2 2 1 2 1 51.233 49.97 2;3 8.8609E-30 24765 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 223.36 206.82 492470000 82813000 19369000 11290000 0 0 0 60161000 49768000 49177000 0 0 0 37074000 37853000 39986000 0 0 0 35716000 44578000 24689000 0 0 0 22570 1076 21858 420226;420227;420228;420229;420230;420231;420232;420233;420234;420235;420236;420237;420238;420239;420240;420241;420242;420243;420244;420245;420246;420247 258073;258074;258075;258076;258077;258078;258079;258080;258081;258082;258083;258084;258085 258073 8 VTPNMSTWRPCDQVESAVAWK Unmodified 2461.1518 0.15184933 1299 P27302 tktA Transketolase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.904 38.067 3 2.4301E-07 18845 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.41 107.07 1354500000 68477000 56317000 62931000 2040900 2496700 1973000 152900000 123550000 136260000 2427100 2624400 1649600 124180000 90462000 105820000 0 0 0 144770000 152310000 121830000 0 0 1484100 22571 1299 21859 420248;420249;420250;420251;420252;420253;420254;420255;420256;420257;420258;420259;420260;420261;420262;420263;420264;420265;420266 258086;258087;258088;258089;258090;258091;258092;258093;258094;258095;258096;258097 258087 12 VTPVGTPVTEEDFLQPGNK Unmodified 2027.0211 0.021135958 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 1 1 40.288 38.494 2;3 2.8318E-30 17888 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 224.43 216.71 2126500000 119320000 121600000 111020000 3039400 3523700 3056900 180400000 170310000 160250000 3321400 3961800 2358200 180750000 200900000 172390000 0 0 0 235240000 221800000 223380000 0 5656500 4216400 22572 499 21860 420267;420268;420269;420270;420271;420272;420273;420274;420275;420276;420277;420278;420279;420280;420281;420282;420283;420284;420285;420286;420287;420288;420289;420290;420291;420292;420293;420294;420295;420296;420297;420298;420299;420300;420301;420302 258098;258099;258100;258101;258102;258103;258104;258105;258106;258107;258108;258109;258110;258111;258112;258113;258114;258115;258116;258117;258118;258119 258118 22 VTPYIAK Unmodified 790.45889 0.45889025 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.87 15.688 2 0.12809 5254 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 48.761 23.203 208970000 36273000 52484000 36853000 379810 318720 0 13654000 14392000 13291000 0 0 0 6597800 7051900 4915800 0 0 0 6946300 8148100 7667200 0 0 0 22573 218 21861 420303;420304;420305;420306;420307;420308;420309;420310;420311;420312;420313;420314;420315;420316 258120 258120 1 VTQLDEELGHVGLAQPGSPK Unmodified 2074.0695 0.069483134 230 P0A6C8 argB Acetylglutamate kinase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 34.442 32.794 3 0.0023634 15509 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 56.748 54.536 75025000 11391000 8750200 10694000 0 0 0 7143900 0 6629000 3911900 2559000 2349900 3709100 3226600 4061100 0 0 0 4831100 5768400 0 0 0 0 22574 230 21862 420317;420318;420319;420320;420321;420322;420323;420324;420325;420326;420327;420328;420329 258121 258121 1 VTQPIIGPLR Unmodified 1092.6655 0.66552898 1687 P64564 yggT Uncharacterized protein YggT yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.558 29.174 2 1.9832E-06 13606 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 159.04 159.04 267970000 17767000 16259000 13351000 1093700 0 1364200 16847000 16514000 14969000 0 0 0 27016000 21121000 23781000 0 0 0 25995000 33702000 38193000 0 0 0 22575 1687 21863 420330;420331;420332;420333;420334;420335;420336;420337;420338;420339;420340;420341;420342;420343 258122;258123;258124;258125;258126;258127;258128 258124 6 VTQQNASLVQESAAAAAALEEQASR Unmodified 2542.2623 0.2623223 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 49.658 48.309 2;3 2.3365E-50 17423 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 184.93 179.03 135430000 20749000 14104000 20295000 25910000 27686000 26688000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22576 151 21864 420344;420345;420346;420347;420348;420349;420350;420351;420352;420353;420354 258129;258130;258131;258132;258133;258134 258129 6 VTQSDRDLFK Unmodified 1207.6197 0.619701 1197 P22523 mukB Chromosome partition protein MukB yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.051 15.641 2 0.026957 4240 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 62.582 52.114 47895000 0 0 1782100 0 0 420080 0 3678700 4163000 3161200 2759400 2318800 3415900 2848500 2410600 0 0 0 4648400 5573900 4363300 2917900 3433000 0 22577 1197 21865 420355;420356;420357;420358;420359;420360;420361;420362;420363;420364;420365;420366;420367;420368;420369 258135 258135 1 VTQWETLDWVQEVQK Unmodified 1887.9367 0.93667805 1627 P60664 hisF Imidazole glycerol phosphate synthase subunit HisF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 50.143 48.73 2;3 1.4871E-11 22997 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 168.98 161.84 248050000 36036000 27710000 29603000 0 0 0 19149000 17079000 16072000 0 0 0 17512000 12491000 14568000 0 0 0 19200000 19201000 19432000 0 0 0 22578 1627 21866 420370;420371;420372;420373;420374;420375;420376;420377;420378;420379;420380;420381;420382;420383;420384;420385;420386;420387;420388;420389;420390;420391;420392 258136;258137;258138;258139;258140;258141;258142;258143;258144;258145 258142 9 VTRSGESPSDALLR Unmodified 1486.774 0.77396981 289 P0A6W9 gshA Glutamate--cysteine ligase yes yes 0 0 1 By MS/MS 1 37.088 35.597 3 0.17102 16466 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 6.6684 5.3023 10660000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10660000 0 0 0 0 0 0 0 0 0 22579 289 21867 420393 258146 258146 1 VTSCLVNPR Unmodified 1044.5386 0.53861391 1554 P42593 fadH 2,4-dienoyl-CoA reductase [NADPH] yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 15.842 16.635 2 0.00034546 5708 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.89 105.55 104090000 34503000 33341000 25759000 0 0 0 0 0 0 0 0 0 0 0 3527300 0 0 0 0 0 6955600 0 0 0 22580 1554 21868 420394;420395;420396;420397;420398 258147;258148 258148 2 VTSEEQYAIAVDLAFEFDHK Unmodified 2311.1008 0.10084284 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 52.871 51.503 3 3.1525E-10 25664 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 118.37 113.82 111100000 6245000 6452200 5300700 2183000 0 0 11664000 7049600 12500000 0 0 0 11459000 12620000 9711000 0 0 0 7038200 9673400 9202500 0 0 0 22581 253 21869 420399;420400;420401;420402;420403;420404;420405;420406;420407;420408;420409;420410;420411 258149;258150;258151;258152;258153;258154;258155 258149 7 VTSGSSLMPQK Unmodified 1133.5751 0.575059 1069 P11447 argH Argininosuccinate lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.065 16.88 2 0.00022226 5863 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.65 78.906 101940000 6939100 10307000 6933600 0 0 0 10241000 10148000 9026900 0 0 0 6959600 6253100 5422600 0 0 0 8180500 10613000 10919000 0 0 0 22582 1069 21870 420412;420413;420414;420415;420416;420417;420418;420419;420420;420421;420422;420423 258156;258157;258158;258159 258157 4 VTSNSVMNSFFIPR Unmodified 1597.7923 0.79226242 661 P0ABJ1 cyoA Cytochrome bo(3) ubiquinol oxidase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.253 44.675 2 5.5199E-20 21570 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 220.1 202.23 749860000 48758000 42336000 41304000 7913900 6978100 7406800 0 0 0 16336000 14098000 16832000 49159000 58368000 53820000 0 0 0 106340000 116560000 112140000 16200000 16821000 18490000 22583 661 21871 420424;420425;420426;420427;420428;420429;420430;420431;420432;420433;420434;420435;420436;420437;420438;420439;420440;420441 258160;258161;258162;258163;258164;258165;258166;258167;258168 258163 8 VTSPISGR Unmodified 815.45012 0.45011648 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.651 14.154 2 0.0026172 4366 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.997 52.646 627690000 27326000 22134000 19746000 0 0 0 70098000 62607000 53082000 30777000 30494000 32241000 0 31040000 24487000 8824900 6727700 7352300 53035000 43724000 44101000 20431000 18850000 20616000 22584 826 21872 420442;420443;420444;420445;420446;420447;420448;420449;420450;420451;420452;420453;420454;420455;420456;420457;420458;420459;420460;420461;420462;420463 258169;258170;258171;258172;258173;258174;258175;258176;258177;258178;258179;258180;258181;258182 258179 14 VTSVEAITDTVYR Unmodified 1452.746 0.74602373 875 P0AEN1 fre NAD(P)H-flavin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.077 34.372 2 7.0241E-09 16889 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 206.49 204.46 1006800000 90223000 99000000 87282000 1348500 1218300 1730100 74735000 66516000 70704000 2334500 2809000 0 76297000 67815000 67823000 0 0 0 98961000 102870000 95169000 0 0 0 22585 875 21873 420464;420465;420466;420467;420468;420469;420470;420471;420472;420473;420474;420475;420476;420477;420478;420479;420480 258183;258184;258185;258186;258187;258188;258189;258190;258191;258192;258193 258183 9 VTSVLIGASR Unmodified 1001.5869 0.58694431 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 22.88 22.312 2 4.8742E-05 9375 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.57 66.568 471500000 96881000 100200000 99745000 0 0 0 36234000 30962000 34908000 0 0 0 12774000 11252000 11973000 0 0 0 11922000 11763000 12887000 0 0 0 22586 1958 21874 420481;420482;420483;420484;420485;420486;420487;420488;420489;420490;420491;420492 258194;258195;258196;258197;258198 258197 4 VTTAFTFIK Unmodified 1026.575 0.57498264 1692 P64596 yraP Uncharacterized protein YraP yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.288 35.429 2 0.0011984 14130 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 90.657 80.67 144640000 9267900 8590700 6158500 2331800 1974400 2522000 8658400 6789100 7438000 7827700 8045700 6406000 6574900 7215900 6777200 0 0 0 13090000 11338000 12417000 3209500 3693300 4317200 22587 1692 21875 420493;420494;420495;420496;420497;420498;420499;420500;420501;420502;420503;420504;420505;420506;420507;420508;420509;420510;420511;420512;420513 258199;258200;258201;258202;258203;258204;258205;258206;258207;258208;258209;258210;258211;258212;258213 258200 15 VTTASVASDGNLAITCSR Unmodified 1821.8891 0.88907593 1970 Q46948 yajL Probable protein deglycase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 1 2 2 29.541 28.291 2;3 4.4087E-17 12152 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.18 178.02 403780000 47100000 38326000 41000000 0 0 0 33717000 44063000 41949000 0 0 0 28730000 28192000 6730300 0 0 0 10148000 46097000 37732000 0 0 0 22588 1970 21876 420514;420515;420516;420517;420518;420519;420520;420521;420522;420523;420524;420525;420526;420527;420528;420529;420530;420531;420532;420533;420534;420535 258214;258215;258216;258217;258218;258219;258220;258221;258222;258223;258224;258225;258226;258227;258228;258229 258228 16 VTTIIQGGTSSVTALTGSTEESQF Unmodified 2413.186 0.18602903 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 3 3 3 1 1 2 2 2 2 2 2 2 51.632 50.384 2;3 8.0033E-05 24552 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.18 125.9 782280000 216810000 182710000 162310000 1113300 0 0 0 16373000 35721000 0 0 0 35470000 19400000 19075000 0 0 0 32486000 31070000 29736000 0 0 0 22589 517 21877 420536;420537;420538;420539;420540;420541;420542;420543;420544;420545;420546;420547;420548;420549;420550;420551;420552;420553;420554;420555;420556;420557;420558;420559;420560 258230;258231;258232;258233;258234;258235;258236;258237;258238;258239 258231 10 VTTVLVPSQLQDK Unmodified 1426.8031 0.80314468 811 P0ADV1 lptA Lipopolysaccharide export system protein LptA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.535 31.195 2 4.6233E-07 14911 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 147.37 145.77 496650000 44578000 34470000 35154000 0 0 0 59072000 51439000 52565000 0 0 0 36736000 32910000 33816000 0 0 0 37622000 38771000 39522000 0 0 0 22590 811 21878 420561;420562;420563;420564;420565;420566;420567;420568;420569;420570;420571;420572 258240;258241;258242;258243;258244;258245;258246;258247 258241 7 VTTVVIDDDVAVK Unmodified 1372.745 0.7449611 1806 P76015 dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 1 31.783 30.399 2 5.4653E-07 13481 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 145.46 141.81 1164800000 32809000 33490000 26268000 0 0 0 162790000 152550000 152900000 0 0 0 129190000 121100000 102830000 0 0 0 87505000 84278000 79115000 0 0 0 22591 1806 21879 420573;420574;420575;420576;420577;420578;420579;420580;420581;420582;420583;420584;420585;420586;420587;420588;420589;420590;420591;420592 258248;258249;258250;258251;258252;258253;258254;258255;258256;258257;258258;258259;258260;258261;258262 258258 10 VTVDGEIVR Unmodified 986.53966 0.53965977 574 P0AA43 rsuA Ribosomal small subunit pseudouridine synthase A yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 1 2 1 1 1 1 1 20.856 21.109 2 0.00050796 8362 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 110.12 59.154 44953000 0 0 1372200 4475300 3754200 3894500 0 0 0 4034900 0 5411700 6271700 3718400 4029200 0 0 0 3005200 2665800 0 2320400 0 0 22592 574 21880 420593;420594;420595;420596;420597;420598;420599;420600;420601;420602;420603;420604;420605;420606;420607 258263;258264;258265;258266;258267 258265 5 VTVDGEIVRNAAFK Unmodified 1517.8202 0.82019173 574 P0AA43 rsuA Ribosomal small subunit pseudouridine synthase A yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.564 40.701 3 0.11563 20340 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 27.676 23.885 330880000 10466000 9912800 10896000 451260 0 1048800 32758000 25767000 28527000 3921600 2115200 2969400 30295000 32019000 31042000 0 0 0 39901000 34558000 33197000 0 0 1035000 22593 574 21881 420608;420609;420610;420611;420612;420613;420614;420615;420616;420617;420618;420619;420620;420621;420622;420623;420624;420625 258268;258269;258270 258268 3 VTVDGLR Unmodified 758.42865 0.42865276 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 17.159 17.692 2 4.3391E-05 5211 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 178.02 129.85 2183300000 261390000 255180000 226460000 49686000 41663000 31999000 199070000 179280000 182470000 36379000 33498000 30534000 92432000 74425000 72336000 2399900 1644100 1802300 146080000 137710000 117290000 3642300 3454100 2450500 22594 1211 21882 420626;420627;420628;420629;420630;420631;420632;420633;420634;420635;420636;420637;420638;420639;420640;420641;420642;420643;420644;420645;420646;420647;420648;420649;420650;420651;420652;420653;420654 258271;258272;258273;258274;258275;258276;258277;258278;258279;258280;258281;258282;258283;258284;258285;258286;258287 258272 17 VTVDGLRAVK Unmodified 1056.6291 0.62914348 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 15.283 15.596 2;3 0.0056078 4146 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 81.191 45.697 7823800000 0 0 0 5203000 4246600 4909900 0 0 0 612410000 556310000 634190000 0 0 0 1302600000 1182500000 1094300000 0 0 0 809360000 857040000 760720000 22595 1211 21883 420655;420656;420657;420658;420659;420660;420661;420662;420663;420664;420665;420666;420667;420668;420669;420670;420671;420672;420673;420674;420675;420676;420677;420678 258288;258289;258290;258291;258292;258293;258294;258295;258296;258297;258298;258299;258300;258301;258302;258303;258304;258305 258288 18 VTVEGHADER Unmodified 1111.5258 0.52580062 481 P0A912 pal Peptidoglycan-associated lipoprotein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.555 11.371 2 4.1177E-05 2719 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 139.98 130.39 203950000 17323000 15471000 14594000 0 0 0 7491000 7257500 7209700 0 0 0 16061000 13392000 15659000 0 0 0 33745000 31568000 24182000 0 0 0 22596 481 21884 420679;420680;420681;420682;420683;420684;420685;420686;420687;420688;420689;420690;420691;420692 258306;258307;258308;258309;258310;258311;258312;258313 258309 8 VTVEHPDKLEEK Unmodified 1422.7355 0.73545904 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 3 2 2 3 3 3 3 3 2 1 11.984 12.813 2;3;4 2.2467E-39 3533 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 281.83 236.23 8033500000 118460000 191370000 154050000 1120200 0 0 540840000 529560000 515370000 0 0 0 813720000 728800000 1022200000 0 0 0 1340800000 1325700000 749440000 0 0 1986500 22597 895 21885 420693;420694;420695;420696;420697;420698;420699;420700;420701;420702;420703;420704;420705;420706;420707;420708;420709;420710;420711;420712;420713;420714;420715;420716;420717;420718;420719;420720;420721;420722;420723;420724;420725;420726 258314;258315;258316;258317;258318;258319;258320;258321;258322;258323;258324;258325;258326;258327;258328;258329;258330;258331;258332 258314 19 VTVEHPDKLEEKFPQVAATGDGPDIIFWAHDR Unmodified 3616.795 0.79504619 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 2 3 3 3 3 3 3 1 3 3 3 2 2 1 41.573 39.853 4;5;6 2.6139E-43 19309 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 206.32 201.37 1861600000 15415000 9393300 10489000 1797400 1900200 3161200 208690000 152250000 118800000 0 0 0 167520000 122490000 144950000 0 1049200 0 273450000 323230000 284430000 9845800 7916900 4785600 22598 895 21886 420727;420728;420729;420730;420731;420732;420733;420734;420735;420736;420737;420738;420739;420740;420741;420742;420743;420744;420745;420746;420747;420748;420749;420750;420751;420752;420753;420754;420755;420756;420757;420758;420759;420760;420761;420762;420763;420764;420765;420766 258333;258334;258335;258336;258337;258338;258339;258340;258341;258342;258343;258344;258345;258346;258347;258348;258349;258350;258351;258352;258353;258354;258355;258356;258357 258349 25 VTVELTPYDLSK Unmodified 1363.7235 0.72349737 1727 P69222 infA Translation initiation factor IF-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.315 36.716 2 3.9143E-08 17607 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.83 155.53 2189000000 326590000 308050000 284130000 1417300 1390300 1050800 133410000 127830000 135640000 929190 926050 829320 132820000 128700000 128720000 882490 443780 539500 157640000 161490000 153760000 1111700 752110 0 22599 1727 21887 420767;420768;420769;420770;420771;420772;420773;420774;420775;420776;420777;420778;420779;420780;420781;420782;420783;420784;420785;420786;420787;420788;420789 258358;258359;258360;258361;258362;258363;258364;258365;258366;258367 258364 10 VTVETTGIDSEITSQAGPQLVVPAMNAR Unmodified 2883.4648 0.46478685 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 1 2 1 1 2 49.464 48.083 2;3 8.4311E-41 23623 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 260.12 244.01 372110000 90440000 78078000 65703000 0 0 0 19259000 15552000 14775000 0 0 0 18788000 0 15636000 0 0 0 21542000 5563900 26772000 0 0 0 22600 1465 21888 420790;420791;420792;420793;420794;420795;420796;420797;420798;420799;420800;420801;420802;420803;420804;420805;420806;420807 258368;258369;258370;258371;258372;258373;258374;258375 258371 8 VTVNDITETVR Unmodified 1245.6565 0.65648044 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 29.448 28.192 2 3.6814E-06 13137 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 153.97 111.86 386990000 49865000 43078000 44242000 0 0 0 29605000 34414000 33322000 0 0 0 33827000 30551000 27653000 0 0 0 27774000 1401300 31254000 0 0 0 22601 184 21889 420808;420809;420810;420811;420812;420813;420814;420815;420816;420817;420818;420819 258376;258377;258378;258379;258380;258381;258382 258379 3 VTVPLFEGVQK Unmodified 1215.6863 0.68632401 857 P0AEG4 dsbA Thiol:disulfide interchange protein DsbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.035 37.361 2 5.8999E-05 18173 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 127.68 127.68 5038000000 364450000 321750000 304430000 0 0 0 432280000 396410000 416840000 0 0 0 344640000 295790000 312110000 0 0 0 622230000 601540000 625540000 0 0 0 22602 857 21890 420820;420821;420822;420823;420824;420825;420826;420827;420828;420829;420830;420831 258383;258384;258385;258386;258387;258388;258389;258390;258391;258392;258393;258394 258389 12 VTVPTLK Unmodified 756.47454 0.47454032 1440 P36659 cbpA Curved DNA-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.245 21.991 2 0.0059588 9515 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 97.473 58.254 859000000 77970000 66302000 60226000 2844100 2750400 2553800 174160000 174730000 150270000 9978900 10585000 10500000 18352000 16972000 19689000 1490100 1207600 977200 17112000 21452000 16963000 0 1045600 874440 22603 1440 21891 420832;420833;420834;420835;420836;420837;420838;420839;420840;420841;420842;420843;420844;420845;420846;420847;420848;420849;420850;420851;420852;420853;420854 258395;258396;258397;258398;258399;258400;258401;258402;258403;258404;258405;258406;258407 258398 13 VTVPVLWDK Unmodified 1055.6015 0.60153174 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.584 38.919 2 0.0022891 19345 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 85.666 76.844 330900000 55780000 51737000 51701000 0 0 0 33860000 31184000 31074000 0 0 0 10097000 12550000 10297000 0 0 0 13749000 15928000 12938000 0 0 0 22604 1557 21892 420855;420856;420857;420858;420859;420860;420861;420862;420863;420864;420865;420866 258408;258409;258410;258411;258412;258413;258414;258415;258416;258417 258409 9 VTVPVLWDKK Unmodified 1183.6965 0.69649476 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 31.034 29.638 3 0.092505 13955 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 34.773 34.773 31967000 5729700 4866000 3454800 0 0 0 3615900 3789700 5084300 0 0 0 0 1195900 1936600 0 0 0 2294100 0 0 0 0 0 22605 1557 21893 420867;420868;420869;420870;420871;420872;420873;420874;420875 258418 258418 0 VTVQDAVEK Unmodified 987.52368 0.52367535 384 P0A800 rpoZ DNA-directed RNA polymerase subunit omega yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 3 4 4 2 1 1 4 2 2 1 1 2 2 3 3 15.315 15.743 2 9.9913E-08 4225 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 183.65 132.45 33905000000 286490000 300110000 300880000 20029000 18613000 18438000 332220000 0 336630000 3017900000 2183200000 2169200000 274570000 924300 3548100 4775400000 5413200000 4687800000 432510000 388220000 380950000 2827800000 2987000000 2748900000 22606 384 21894 420876;420877;420878;420879;420880;420881;420882;420883;420884;420885;420886;420887;420888;420889;420890;420891;420892;420893;420894;420895;420896;420897;420898;420899;420900;420901;420902;420903;420904;420905;420906;420907;420908;420909;420910;420911;420912;420913;420914;420915;420916;420917;420918;420919 258419;258420;258421;258422;258423;258424;258425;258426;258427;258428;258429;258430;258431;258432;258433;258434;258435;258436;258437;258438;258439;258440;258441;258442;258443;258444;258445;258446;258447;258448;258449;258450;258451;258452;258453;258454;258455;258456;258457;258458;258459;258460;258461 258420 34 VTVQSLDVVR Unmodified 1114.6346 0.63462279 1621 P60438 rplC 50S ribosomal protein L3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.98 27.673 2 3.1472E-12 12762 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 208.37 149.56 10648000000 1456400000 1483300000 1199200000 35913000 37024000 38994000 429950000 414070000 397060000 112330000 94824000 98880000 547240000 552570000 529310000 86040000 60755000 63732000 901730000 916950000 905120000 101380000 93209000 91621000 22607 1621 21895 420920;420921;420922;420923;420924;420925;420926;420927;420928;420929;420930;420931;420932;420933;420934;420935;420936;420937;420938;420939;420940;420941;420942;420943 258462;258463;258464;258465;258466;258467;258468;258469;258470;258471;258472;258473;258474;258475;258476;258477;258478;258479;258480;258481 258476 20 VTVSNLSGIFQVTEETIR Unmodified 1992.0528 0.052770437 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 0 By MS/MS 1 53.591 52.289 3 0.11192 19077 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 33.836 29.868 2359500 0 0 0 2359500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22608 1933 21896 420944 258482 258482 0 VTVSNLSGIFQVTEETIRR Unmodified 2148.1539 0.15388147 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 49.56 48.196 3 4.7462E-23 19142 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 194.37 187.04 95850000 1392800 0 0 19643000 18814000 15776000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16013000 11733000 12478000 22609 1933 21897 420945;420946;420947;420948;420949;420950;420951 258483;258484;258485;258486;258487;258488 258483 6 VTVTGMGMVMR Unmodified 1180.5767 0.57665568 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.518 31.861 2 0.00025046 14635 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 98.033 70.704 591500000 57772000 49399000 45665000 0 0 0 38083000 34867000 46780000 1967900 1598000 0 51238000 47987000 43941000 0 0 0 47433000 54051000 66459000 1350100 1139800 1768300 22610 1185 21898 420952;420953;420954;420955;420956;420957;420958;420959;420960;420961;420962;420963;420964;420965;420966;420967;420968 258489;258490;258491;258492 258492 1 VTVTGMGMVMRPITEPGVYSSGIPLQPNK Unmodified 3058.5654 0.56536929 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.964 46.705 3 5.7392E-11 17548 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 112.8 106.51 247070000 14206000 14832000 16032000 0 0 2832900 9455000 16369000 13238000 7940800 11455000 8587400 10540000 15806000 12776000 9013900 7131400 6195300 16325000 9716400 13117000 9177300 9479700 12841000 22611 1185 21899 420969;420970;420971;420972;420973;420974;420975;420976;420977;420978;420979;420980;420981;420982;420983;420984;420985;420986;420987;420988;420989;420990 258493;258494;258495;258496;258497;258498;258499;258500;258501 258493 9 VTVTLECQR Unmodified 1104.5597 0.55974328 625 P0AB28 yceD Uncharacterized protein YceD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.812 19.377 2 0.00034096 7427 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 114.28 106.34 260300000 36425000 31814000 24103000 0 0 0 16452000 19898000 16779000 0 0 0 18352000 17922000 16411000 0 0 0 19112000 23023000 20009000 0 0 0 22612 625 21900 420991;420992;420993;420994;420995;420996;420997;420998;420999;421000;421001;421002 258502;258503;258504 258502 3 VTVVASGVPAGLGEPVFDR Unmodified 1868.9996 0.99961265 1075 P12008 aroC Chorismate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 2 1 2 1 1 2 45.286 43.897 2;3 2.5983E-29 21494 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 212.95 207.23 281830000 42351000 49958000 42831000 0 0 0 14718000 10689000 11853000 0 0 0 20140000 11343000 18438000 0 0 0 15613000 20192000 23704000 0 0 0 22613 1075 21901 421003;421004;421005;421006;421007;421008;421009;421010;421011;421012;421013;421014;421015;421016;421017;421018;421019 258505;258506;258507;258508;258509;258510;258511;258512;258513;258514;258515;258516;258517;258518 258512 14 VTVVATGIGMDK Unmodified 1189.6377 0.63765925 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 27.727 26.537 2 2.6326E-08 12484 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 166.55 159.07 2279800000 233440000 184500000 190920000 4356800 5045500 4671100 206010000 190470000 186000000 22148000 21062000 23601000 126650000 122760000 112260000 2672400 2401200 3120700 221550000 188290000 205010000 8471500 6271700 8078100 22614 502 21902 421020;421021;421022;421023;421024;421025;421026;421027;421028;421029;421030;421031;421032;421033;421034;421035;421036;421037;421038;421039;421040;421041;421042;421043;421044 258519;258520;258521;258522;258523;258524;258525;258526;258527;258528 258521 9 VTVVATGIGMDKRPEITLVTNK Unmodified 2341.3039 0.30391652 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 2 2 2 34.117 32.433 3;4 1.4865E-10 12683 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 130.05 125.17 648690000 0 0 0 28628000 32639000 41950000 0 0 0 134050000 132870000 132650000 0 0 0 9095400 2566700 4260800 0 3069500 0 42143000 41057000 43708000 22615 502 21903 421045;421046;421047;421048;421049;421050;421051;421052;421053;421054;421055;421056;421057;421058;421059;421060;421061;421062;421063;421064;421065;421066 258529;258530;258531;258532;258533;258534;258535;258536;258537;258538;258539;258540;258541;258542;258543;258544;258545 258532 17 VTWAASLGDR Unmodified 1074.5458 0.54580778 1338 P30128 greB Transcription elongation factor GreB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 29.183 27.858 2 8.6246E-09 8903 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 215.88 198.49 221010000 0 0 0 0 0 0 0 0 0 20114000 29140000 28147000 0 0 0 49339000 27289000 30287000 0 0 0 13911000 12356000 10429000 22616 1338 21904 421067;421068;421069;421070;421071;421072;421073;421074;421075 258546;258547;258548;258549;258550 258547 5 VTWCCELK Unmodified 1094.4889 0.48888653 1102 P15042 ligA DNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.889 24.809 2 0.14556 10750 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 41.84 36.899 227490000 9493000 13038000 11529000 0 0 0 25110000 22420000 25310000 0 0 0 20145000 17239000 15394000 0 0 0 22122000 25159000 20529000 0 0 0 22617 1102 21905 421076;421077;421078;421079;421080;421081;421082;421083;421084;421085;421086;421087 258551 258551 1 VTWEDGK Unmodified 833.39193 0.3919329 154 P07024 ushA Protein UshA;UDP-sugar hydrolase;5'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1 1 1 1 1 14.491 15.261 2 0.0066942 5140 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 94.407 65.069 138010000 19793000 23799000 18362000 0 0 0 0 20299000 18617000 0 0 0 8990300 9486100 8479300 0 0 0 10179000 0 0 0 0 0 22618 154 21906 421088;421089;421090;421091;421092;421093;421094;421095;421096;421097;421098;421099 258552;258553;258554;258555;258556;258557;258558;258559 258555 8 VTYGEHVFDFGK Unmodified 1397.6616 0.66156582 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 1 2 1 2 1 1 1 31.151 29.759 2;3 0.012485 14284 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 52.071 48.308 232960000 17472000 13839000 13513000 0 0 0 48001000 41925000 27065000 0 0 0 16665000 9176100 14895000 0 0 0 11238000 9285000 9883200 0 0 0 22619 449 21907 421100;421101;421102;421103;421104;421105;421106;421107;421108;421109;421110;421111;421112;421113;421114;421115 258560;258561;258562;258563;258564;258565;258566;258567;258568 258561 8 VTYGEHVFDFGKPFEK Unmodified 1898.9203 0.9202997 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 1 1 3 3 3 3 3 3 34.827 33.306 2;3;4 1.6686E-23 16226 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 254.89 249.38 7864700000 739820000 639250000 607710000 0 728460 0 1245000000 1074400000 1186200000 2850700 3219100 0 432380000 386260000 367610000 0 0 0 373890000 415350000 390020000 0 0 0 22620 449 21908 421116;421117;421118;421119;421120;421121;421122;421123;421124;421125;421126;421127;421128;421129;421130;421131;421132;421133;421134;421135;421136;421137;421138;421139;421140;421141;421142;421143;421144;421145;421146;421147;421148;421149;421150;421151;421152;421153;421154 258569;258570;258571;258572;258573;258574;258575;258576;258577;258578;258579;258580;258581;258582;258583;258584;258585;258586;258587;258588;258589;258590;258591;258592;258593;258594;258595;258596;258597;258598;258599;258600;258601;258602 258574 34 VTYLGPSGSQIGHK Unmodified 1442.7518 0.75177781 89 P04391;P06960 argI;argF Ornithine carbamoyltransferase chain I;Ornithine carbamoyltransferase chain F yes no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 17.425 18.066 3 9.0706E-05 6603 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 67.234 59.869 54018000 16835000 17050000 15312000 0 0 0 0 2670600 0 0 0 0 0 0 0 0 0 0 2150900 0 0 0 0 0 22621 89 21909 421155;421156;421157;421158;421159 258603;258604;258605 258603 3 VVAAAIEQNYDER Unmodified 1476.7209 0.72087161 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 1 2 2 3 1 3 2 2 3 3 2 23.698 22.918 2;3 3.3947E-40 9968 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 281.89 268.93 3146500000 257360000 252070000 224470000 2068900 1167900 943150 240290000 209180000 214420000 3067400 0 0 279840000 290300000 285690000 0 0 0 270870000 282860000 331940000 0 0 0 22622 1120 21910 421160;421161;421162;421163;421164;421165;421166;421167;421168;421169;421170;421171;421172;421173;421174;421175;421176;421177;421178;421179;421180;421181;421182;421183;421184;421185;421186;421187;421188;421189;421190;421191;421192;421193 258606;258607;258608;258609;258610;258611;258612;258613;258614;258615;258616;258617;258618;258619;258620;258621;258622;258623;258624;258625;258626;258627;258628;258629;258630 258616 12 VVAAVEAQLK Unmodified 1026.6073 0.6073454 1194 P22256 gabT 4-aminobutyrate aminotransferase GabT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.677 21.732 2 0.00048495 9199 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.02 81.039 500190000 101010000 102070000 79480000 501960 391230 311350 51630000 44353000 43979000 0 0 0 8702900 9003500 7924000 0 0 0 17711000 16570000 16546000 0 0 0 22623 1194 21911 421194;421195;421196;421197;421198;421199;421200;421201;421202;421203;421204;421205;421206;421207;421208 258631;258632;258633;258634;258635;258636;258637;258638;258639;258640;258641;258642 258631 12 VVACQGDPDAPVNR Unmodified 1496.7042 0.70417569 1434 P33937 napA Periplasmic nitrate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.504 15.294 2 5.8404E-08 5007 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 141.95 134.31 90824000 10064000 7959700 6895100 245040 0 0 0 10904000 6301100 0 0 0 10599000 8622900 9258900 0 0 0 6858500 7943200 5172400 0 0 0 22624 1434 21912 421209;421210;421211;421212;421213;421214;421215;421216;421217;421218;421219;421220 258643;258644;258645;258646;258647;258648;258649;258650;258651 258647 9 VVADAIAK Unmodified 785.4647 0.46470391 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 4 4 3 2 2 2 1 1 1 2 2 2 1 1 1 3 2 2 3 5 3 14.215 14.858 1;2 0.0018523 2905 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 105.39 42.676 38360000000 1229200000 5415100 0 5225700000 4885800000 5212700000 1527400000 1477900000 1474900000 323180000 337100000 327790000 959840000 895360000 727140000 177730000 149900000 145420000 1544000000 1429800000 1390100000 2967500000 3058200000 2887600000 22625 939 21913 421221;421222;421223;421224;421225;421226;421227;421228;421229;421230;421231;421232;421233;421234;421235;421236;421237;421238;421239;421240;421241;421242;421243;421244;421245;421246;421247;421248;421249;421250;421251;421252;421253;421254;421255;421256;421257;421258;421259;421260;421261;421262;421263;421264;421265;421266;421267;421268;421269;421270;421271 258652;258653;258654;258655;258656;258657;258658;258659;258660;258661;258662;258663;258664;258665;258666;258667;258668;258669;258670;258671;258672;258673;258674;258675;258676;258677;258678;258679;258680;258681;258682;258683;258684;258685;258686;258687;258688;258689;258690;258691;258692 258678 41 VVADDQAPAEQSLR Unmodified 1497.7423 0.74233534 590 P0AAE0 cycA D-serine/D-alanine/glycine transporter yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.272 18.97 2 6.3673E-11 6984 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 208.17 199.95 127930000 34581000 31284000 25468000 6786600 4436600 5751600 0 0 0 0 0 0 2705800 5038000 2661200 0 0 0 4460100 0 4755600 0 0 0 22626 590 21914 421272;421273;421274;421275;421276;421277;421278;421279;421280;421281;421282;421283 258693;258694;258695;258696;258697 258696 5 VVADDQAPAEQSLRR Unmodified 1653.8434 0.84344636 590 P0AAE0 cycA D-serine/D-alanine/glycine transporter yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 16.586 16.847 3 3.892E-06 3623 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 85.457 84.091 54166000 0 0 0 8620100 8498000 9085700 0 0 0 1197200 1048700 1257800 22101000 0 0 0 0 0 0 0 0 1684900 671770 0 22627 590 21915 421284;421285;421286;421287;421288;421289;421290;421291;421292 258698;258699;258700;258701 258700 4 VVADFLSSVGVDR Unmodified 1362.7143 0.71432967 300 P0A717 prs Ribose-phosphate pyrophosphokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 2 2 2 1 1 1 2 2 2 1 1 1 2 3 2 2 2 2 44.461 42.92 2;3 3.6299E-12 20162 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 215.56 172.25 4564200000 382440000 390410000 318840000 32581000 29855000 31346000 307890000 248970000 261310000 18140000 24275000 22401000 387350000 354360000 374080000 28212000 28718000 25919000 383960000 380090000 353900000 64172000 58968000 56027000 22628 300 21916 421293;421294;421295;421296;421297;421298;421299;421300;421301;421302;421303;421304;421305;421306;421307;421308;421309;421310;421311;421312;421313;421314;421315;421316;421317;421318;421319;421320;421321;421322;421323;421324;421325;421326;421327;421328;421329;421330;421331;421332;421333;421334;421335;421336 258702;258703;258704;258705;258706;258707;258708;258709;258710;258711;258712;258713;258714;258715;258716;258717;258718;258719;258720;258721;258722;258723;258724;258725;258726;258727;258728;258729;258730;258731;258732;258733;258734;258735;258736 258730 35 VVADGVNSLR Unmodified 1028.5615 0.56145784 1910 P77499 sufC Probable ATP-dependent transporter SufC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.465 18.88 2 4.0822E-05 7307 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.14 113.01 516590000 51721000 46950000 41874000 0 0 1898100 72490000 69141000 68353000 4357100 3124900 2966300 17983000 15722000 14857000 0 0 0 35591000 32358000 35164000 0 874470 1163100 22629 1910 21917 421337;421338;421339;421340;421341;421342;421343;421344;421345;421346;421347;421348;421349;421350;421351;421352;421353;421354 258737;258738;258739;258740;258741;258742 258740 6 VVADIAGVPAQINIAEVR Unmodified 1834.0312 0.031247134 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 46.959 45.64 2;3 1.3057E-09 18009 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 154.47 148.03 6715700000 976470000 981290000 851420000 27899000 29615000 28744000 217650000 151090000 218210000 65208000 65672000 60763000 413890000 366850000 346520000 39162000 32809000 33276000 559470000 537230000 545210000 56235000 57349000 53676000 22630 374 21918 421355;421356;421357;421358;421359;421360;421361;421362;421363;421364;421365;421366;421367;421368;421369;421370;421371;421372;421373;421374;421375;421376;421377;421378;421379;421380;421381;421382;421383;421384;421385;421386;421387;421388;421389;421390;421391;421392;421393;421394;421395;421396;421397;421398;421399;421400;421401 258743;258744;258745;258746;258747;258748;258749;258750;258751;258752;258753;258754;258755;258756;258757;258758;258759;258760;258761;258762;258763;258764;258765;258766;258767;258768;258769;258770;258771;258772;258773;258774;258775;258776;258777;258778;258779;258780;258781;258782;258783;258784;258785;258786;258787;258788;258789 258762 47 VVADLYK Unmodified 806.4538 0.45380487 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.646 19.006 2 0.091209 7058 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 55.504 34.644 813930000 96891000 86605000 73859000 11350000 10192000 11308000 50702000 44545000 48116000 12995000 12671000 14085000 46035000 45795000 38409000 3013900 1642800 2291100 68278000 52439000 58588000 9640200 7973200 6502900 22631 1829 21919 421402;421403;421404;421405;421406;421407;421408;421409;421410;421411;421412;421413;421414;421415;421416;421417;421418;421419;421420;421421;421422;421423;421424;421425 258790;258791;258792;258793;258794;258795;258796;258797;258798;258799;258800;258801;258802;258803 258799 14 VVADLYKADAEKAEETSNR Unmodified 2108.0386 0.038576936 1829 P76177 ydgH Protein YdgH yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 19.704 20.19 4 0.085456 5837 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 31.111 30.3 11888000 0 0 0 3508800 4257900 4121000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22632 1829 21920 421426;421427;421428 258804;258805;258806 258805 3 VVADVDTLDHLYLR Unmodified 1627.857 0.85697116 1226 P23886 cydC ATP-binding/permease protein CydC yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 40.615 39.073 3 0.14821 18338 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 29.981 25.801 20554000 3661200 2266700 2465700 581370 0 531280 0 0 0 0 0 0 1891300 0 2124800 0 0 0 3009400 0 4021900 0 0 0 22633 1226 21921 421429;421430;421431;421432;421433;421434;421435;421436;421437 258807 258807 0 VVAENALQDALR Unmodified 1297.699 0.69901396 171 P07862 ddlB D-alanine--D-alanine ligase B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 2 2 1 2 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 22.837 22.336 2;3 1.5763E-05 15165 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 125.75 110.98 7549300000 84091000 69500000 70462000 691230 1012200 863850 63796000 54333000 61175000 311330000 237010000 288150000 52831000 52082000 49010000 1740500000 1133500000 1214700000 77379000 78667000 78194000 522090000 672940000 634970000 22634 171 21922 421438;421439;421440;421441;421442;421443;421444;421445;421446;421447;421448;421449;421450;421451;421452;421453;421454;421455;421456;421457;421458;421459;421460;421461;421462;421463;421464;421465;421466;421467;421468;421469;421470;421471;421472;421473 258808;258809;258810;258811;258812;258813;258814;258815;258816;258817;258818 258816 11 VVAGDVVVIR Unmodified 1025.6233 0.62332982 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 28.395 27.19 2 0.068546 12538 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 50.04 40.053 112950000 37882000 34870000 30625000 0 0 0 9568600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22635 118 21923 421474;421475;421476;421477 258819 258819 0 VVAILLNDEVR Unmodified 1239.7187 0.71868677 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 38.288 36.431 2 0.00074353 17554 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 105.4 97.471 325040000 43777000 41754000 28890000 1318500 978170 1067000 60236000 57497000 65858000 0 1526200 1154800 0 0 0 0 0 0 11997000 8984700 0 0 0 0 22636 1174 21924 421478;421479;421480;421481;421482;421483;421484;421485;421486;421487;421488;421489;421490 258820;258821;258822;258823 258822 0 VVAIVTAVQER Unmodified 1183.6925 0.69247202 1201 P22634 murI Glutamate racemase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.542 27.294 2 0.00061989 12694 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 89.08 73.929 184040000 18902000 15236000 13800000 0 0 0 16241000 14785000 14043000 0 0 0 13740000 12476000 12559000 0 0 0 19218000 15059000 17980000 0 0 0 22637 1201 21925 421491;421492;421493;421494;421495;421496;421497;421498;421499;421500;421501;421502 258824;258825;258826;258827;258828;258829;258830;258831;258832;258833;258834;258835 258827 0 VVAKDYIDESTGELICAANMELSLDLLAK Oxidation (M) 3196.5883 0.58833239 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 1 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 1 2 2 3 1 1 1 1 54.841 54.143 3;4 3.7378E-16 21497 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 141.78 136.24 643150000 0 0 0 0 0 0 0 0 0 19135000 16125000 17492000 0 0 0 84978000 196840000 238000000 0 0 4882600 20839000 23438000 21420000 22638 463 21926 421503;421504;421505;421506;421507;421508;421509;421510;421511;421512;421513;421514;421515;421516 258836;258837;258838;258839;258840;258841;258842;258843;258844 258836 282 9 VVAKDYIDESTGELICAANMELSLDLLAK Unmodified 3180.5934 0.59341776 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 5 5 4 3 3 4 4 4 3 55.521 54.465 2;3;4 1.1801E-52 21648 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 307.97 298.56 16168000000 0 0 0 6100800 5446900 5749100 0 0 0 595890000 750980000 686620000 0 0 0 2872300000 4604500000 3497600000 0 0 0 947700000 1161700000 1033300000 22639 463 21926 421517;421518;421519;421520;421521;421522;421523;421524;421525;421526;421527;421528;421529;421530;421531;421532;421533;421534;421535;421536;421537;421538;421539;421540;421541;421542;421543;421544;421545;421546;421547;421548;421549;421550;421551;421552;421553;421554 258845;258846;258847;258848;258849;258850;258851;258852;258853;258854;258855;258856;258857;258858;258859;258860;258861;258862;258863;258864;258865;258866;258867;258868;258869 258865 25 VVALGGGHGLGR Unmodified 1091.62 0.61997578 1768 P75767 ybhK Putative gluconeogenesis factor yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 2 1 1 2 2 2 15.845 16.64 2;3 0.00043109 5818 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 59.367 48.27 255350000 25323000 37398000 27927000 0 0 0 32072000 3307200 3171400 0 0 0 18499000 3038400 0 0 0 0 58080000 23467000 23064000 0 0 0 22640 1768 21927 421555;421556;421557;421558;421559;421560;421561;421562;421563;421564;421565;421566;421567;421568;421569;421570;421571;421572;421573;421574 258870;258871;258872;258873;258874;258875;258876;258877;258878 258874 9 VVALGSAAQDK Unmodified 1057.5768 0.57677356 1296 P27250 ahr Aldehyde reductase Ahr yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.948 15.765 2 9.9585E-06 4969 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 147.2 93.042 621400000 81788000 96767000 92416000 398180 617580 0 57987000 64867000 51369000 0 0 0 36461000 24989000 26998000 0 0 0 31447000 27488000 27806000 0 0 0 22641 1296 21928 421575;421576;421577;421578;421579;421580;421581;421582;421583;421584;421585;421586;421587;421588 258879;258880;258881;258882;258883;258884;258885;258886;258887;258888;258889;258890 258889 12 VVALLGGK Unmodified 755.49052 0.49052473 723 P0ACE0 hybC Hydrogenase-2 large chain yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.328 22.601 2 0.013702 7841 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 73.039 10.325 1566400000 7325600 7853500 8695100 0 0 0 178920000 172030000 117700000 19569000 21997000 14445000 118070000 130260000 139900000 4719200 3183500 4022100 162980000 206120000 196840000 15546000 15017000 21232000 22642 723 21929 421589;421590;421591;421592;421593;421594;421595;421596;421597;421598;421599;421600;421601;421602;421603;421604;421605;421606;421607;421608;421609 258891;258892;258893;258894;258895;258896;258897;258898;258899;258900;258901;258902;258903;258904;258905 258893 15 VVALVAGK Unmodified 755.49052 0.49052473 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.285 17.969 2 0.0086264 6593 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 81.381 9.4319 274500000 17827000 15802000 15546000 0 0 0 30390000 29644000 27849000 0 0 0 26424000 23247000 21711000 0 0 0 22730000 23144000 20187000 0 0 0 22643 1575 21930 421610;421611;421612;421613;421614;421615;421616;421617;421618;421619;421620;421621 258906;258907;258908;258909;258910;258911;258912;258913;258914;258915;258916;258917 258912 12 VVANFLLSPDAQLR Unmodified 1541.8566 0.85657723 1837 P76223 ynjB Protein YnjB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 46.21 44.72 2 1.2622E-08 22235 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 154.24 136.81 174210000 6114800 6807500 7055200 0 0 0 23606000 22478000 22337000 0 0 0 18152000 13317000 14323000 0 0 0 15099000 11477000 13450000 0 0 0 22644 1837 21931 421622;421623;421624;421625;421626;421627;421628;421629;421630;421631;421632;421633 258918;258919;258920 258919 2 VVANQIIHMLESN Unmodified 1466.7551 0.75514863 233 P0A6D7 aroK Shikimate kinase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 1 2 2 2 2 2 2 48.577 47.225 2;3 1.0468E-19 22787 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 193.21 189.87 1208400000 124050000 118560000 120140000 645280 4031600 2599700 131030000 115040000 106790000 0 1216800 0 115000000 93074000 92035000 0 0 0 25168000 139150000 19917000 0 0 0 22645 233 21932 421634;421635;421636;421637;421638;421639;421640;421641;421642;421643;421644;421645;421646;421647;421648;421649;421650;421651;421652;421653;421654;421655;421656;421657;421658;421659;421660;421661;421662 258921;258922;258923;258924;258925;258926;258927;258928;258929;258930;258931;258932;258933;258934;258935;258936;258937;258938;258939;258940;258941;258942;258943;258944;258945;258946 258932 26 VVAQGAPYTWENLCQPLAEVDDVLGR Unmodified 2899.4174 0.41744273 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 54.951 53.437 3 0.040049 26533 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 41.939 39.656 254380000 36078000 0 0 0 0 0 35866000 34909000 27497000 0 0 0 23739000 0 30876000 0 0 0 34049000 31364000 0 0 0 0 22646 1298 21933 421663;421664;421665;421666;421667;421668;421669;421670 258947 258947 0 VVASMQDPNPQVAGR Unmodified 1567.7777 0.77767498 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.631 21.054 2 1.0435E-35 8396 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 261.52 252.79 366850000 34850000 31323000 23556000 0 0 0 31459000 32714000 32312000 0 0 0 29887000 27910000 25405000 0 0 0 33034000 34246000 30149000 0 0 0 22647 1262 21934 421671;421672;421673;421674;421675;421676;421677;421678;421679;421680;421681;421682 258948;258949;258950;258951;258952;258953;258954;258955 258952 8 VVASPGQGQQFEIQASK Unmodified 1772.9057 0.90571227 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.558 24.486 2;3 4.0638E-24 11209 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 207.12 200.54 1554100000 201080000 176430000 180200000 0 0 0 102570000 99279000 105590000 0 0 0 80507000 88133000 81733000 0 0 0 147800000 148740000 142000000 0 0 0 22648 444 21935 421683;421684;421685;421686;421687;421688;421689;421690;421691;421692;421693;421694;421695;421696;421697;421698;421699;421700;421701;421702;421703;421704;421705;421706 258956;258957;258958;258959;258960;258961;258962;258963;258964;258965;258966;258967;258968;258969;258970;258971 258957 16 VVATFPEDSHK Unmodified 1228.6088 0.60880197 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 14.45 15.209 3 0.0009497 5143 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 62.408 60.772 326200000 106780000 98454000 100720000 0 0 1219400 4288200 6717600 0 0 0 0 0 0 0 0 0 0 8016000 0 0 0 0 0 22649 1464 21936 421707;421708;421709;421710;421711;421712;421713 258972;258973 258973 2 VVAVGDQVEK Unmodified 1042.5659 0.56587452 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 14.493 15.336 2 3.848E-05 5007 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.2 130.13 2348100000 830750000 803320000 709780000 1261200 1513400 1455400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22650 1762 21937 421714;421715;421716;421717;421718;421719 258974;258975;258976 258976 3 VVAVGLPPESMSLDIPR Unmodified 1778.9601 0.96005603 1541 P39451 adhP Alcohol dehydrogenase, propanol-preferring yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 49.607 48.268 2 0.00036816 23620 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 66.989 58.857 35998000 14176000 10372000 11450000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22651 1541 21938 421720;421721;421722 258977 258977 0 VVAWASK Unmodified 759.42792 0.42792448 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 16.342 17.082 2 0.048538 5896 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.306 53.122 161290000 50289000 47327000 47411000 0 0 0 1515800 0 4403700 0 0 0 0 2969400 2493000 0 0 0 0 0 4880900 0 0 0 22652 1173 21939 421723;421724;421725;421726;421727;421728;421729;421730 258978;258979;258980 258978 3 VVCEATMMCAR Unmodified 1326.5553 0.55526831 272 P0A6Q6 fabZ 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 21.26 21.33 2 8.544E-11 8569 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 198.65 195.39 246010000 7927800 7796200 6573100 3052000 3112500 4029400 5171500 7882100 9600000 12109000 11324000 13804000 15848000 11873000 13627000 11351000 7980200 8169300 18032000 15010000 13375000 13620000 12860000 11878000 22653 272 21940 421731;421732;421733;421734;421735;421736;421737;421738;421739;421740;421741;421742;421743;421744;421745;421746;421747;421748;421749;421750;421751;421752;421753;421754;421755 258981;258982;258983;258984;258985;258986;258987;258988;258989;258990;258991;258992;258993;258994;258995;258996;258997;258998 258991 18 VVCVGSNYAK Unmodified 1095.5383 0.53827956 1802 P76004 ycgM Uncharacterized protein YcgM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.617 15.383 2 6.6715E-05 5149 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 133.55 123.28 436190000 57523000 51870000 62477000 0 0 0 37864000 38443000 37460000 0 0 0 27959000 24619000 20509000 0 0 0 24061000 28902000 24500000 0 0 0 22654 1802 21941 421756;421757;421758;421759;421760;421761;421762;421763;421764;421765;421766;421767 258999;259000;259001;259002;259003;259004;259005;259006;259007;259008;259009 259005 11 VVDAAVEK Unmodified 829.45453 0.45453316 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.889 12.578 2 0.011249 2551 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 77.072 52.128 15736000000 2034900000 2705700000 2295000000 8664200 9150600 9050600 760650000 741370000 776840000 0 0 0 880960000 878090000 868270000 1401200 1184600 1726400 1166500000 1292700000 1300300000 1959500 0 1660700 22655 179 21942 421768;421769;421770;421771;421772;421773;421774;421775;421776;421777;421778;421779;421780;421781;421782;421783;421784;421785;421786;421787 259010;259011;259012 259012 3 VVDAQPMR Unmodified 914.46439 0.46438634 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 12.878 13.481 2 0.00075967 3992 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.34 107.79 997440000 73972000 81613000 75212000 0 0 0 0 0 113330000 0 0 3487200 0 0 0 2840100 0 0 233690000 193920000 215760000 0 3613600 0 22656 1218 21943 421788;421789;421790;421791;421792;421793;421794;421795;421796;421797;421798;421799;421800 259013;259014;259015;259016;259017;259018 259016 5 VVDFFVR Unmodified 880.48069 0.48068833 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 36.45 34.894 2 0.00014163 16802 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 170.43 149.45 876300000 51013000 46474000 56623000 0 0 0 91697000 71739000 79594000 0 0 0 64927000 74993000 69652000 0 0 0 103000000 81792000 84799000 0 0 0 22657 1956 21944 421801;421802;421803;421804;421805;421806;421807;421808;421809;421810;421811;421812 259019;259020;259021;259022;259023;259024;259025;259026;259027;259028;259029;259030 259025 12 VVDGAMQIIGR Unmodified 1157.6227 0.62267789 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.658 30.302 2 5.0763E-06 14304 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 152.47 143.05 255060000 31810000 28207000 28611000 0 0 0 16920000 15042000 16211000 0 0 0 14280000 17049000 14063000 0 0 0 22501000 27351000 23019000 0 0 0 22658 953 21945 421813;421814;421815;421816;421817;421818;421819;421820;421821;421822;421823;421824 259031;259032;259033;259034;259035;259036;259037;259038;259039 259034 9 VVDGVGILR Unmodified 926.55492 0.5549159 1789 P75914 ycdX Probable phosphatase YcdX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 2 2 2 2 1 1 1 31.55 30.157 2 1.0438E-05 12633 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.17 113.49 670910000 65786000 70845000 57300000 0 2436700 0 56267000 59374000 55101000 0 0 0 50758000 49171000 46841000 0 0 0 51999000 51534000 53492000 0 0 0 22659 1789 21946 421825;421826;421827;421828;421829;421830;421831;421832;421833;421834;421835;421836;421837;421838;421839;421840;421841;421842;421843;421844;421845 259040;259041;259042;259043;259044;259045;259046;259047;259048;259049;259050;259051;259052;259053 259050 14 VVDGVVK Unmodified 714.42759 0.42759012 151 P07017 tar Methyl-accepting chemotaxis protein II yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.24 13.774 2 0.011869 2829 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 85.359 33.06 161240000 8472100 6923500 8067300 54098000 0 44832000 3257200 6950500 6711100 1302100 1297600 2141600 4428200 0 0 3194700 1688400 2178500 0 3940000 0 0 1756400 0 22660 151 21947 421846;421847;421848;421849;421850;421851;421852;421853;421854;421855;421856;421857;421858;421859;421860;421861;421862 259054;259055 259055 2 VVDILALGQNIAK Unmodified 1352.8028 0.80275075 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 48.394 47.068 2 9.1714E-07 23249 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.05 129.22 306770000 45644000 46651000 41750000 0 0 0 28112000 23796000 26345000 0 0 0 14397000 12488000 13463000 0 0 0 18686000 19037000 16405000 0 0 0 22661 426 21948 421863;421864;421865;421866;421867;421868;421869;421870;421871;421872;421873;421874 259056;259057;259058;259059;259060;259061;259062;259063;259064;259065;259066;259067 259058 12 VVDLAAK Unmodified 714.42759 0.42759012 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.327 14.762 2 0.035599 4739 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 65.672 12.989 861600000 0 0 0 2505000 0 0 102430000 42844000 0 29878000 28073000 32011000 92137000 0 0 19914000 17581000 20861000 153680000 150620000 142300000 13721000 13033000 0 22662 65 21949 421875;421876;421877;421878;421879;421880;421881;421882;421883;421884;421885;421886;421887;421888;421889 259068;259069;259070 259069 3 VVDLNNLTFDR Unmodified 1304.6725 0.67246486 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.93 38.149 2 3.4413E-10 17724 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 211.02 141.6 988700000 101520000 90152000 80054000 0 0 0 100330000 89433000 90771000 0 934540 934910 74227000 67398000 65850000 0 0 0 75732000 76861000 74501000 0 0 0 22663 1252 21950 421890;421891;421892;421893;421894;421895;421896;421897;421898;421899;421900;421901;421902;421903 259071;259072;259073;259074;259075;259076;259077;259078;259079;259080;259081;259082 259082 11 VVDMMETGSNDVLVIK Unmodified 1748.8689 0.86885776 379 P0A7X6 rimM Ribosome maturation factor RimM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.164 41.649 2 6.2298E-10 20145 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.75 122.87 68227000 9695600 9849500 8333500 0 0 0 7053000 6042800 7692100 0 0 0 2909500 3270800 2244600 0 0 0 4850500 2732300 3552900 0 0 0 22664 379 21951 421904;421905;421906;421907;421908;421909;421910;421911;421912;421913;421914;421915 259083;259084;259085 259085 3 VVDNVVQTMR Unmodified 1159.6019 0.60194245 76 P02942 tsr Methyl-accepting chemotaxis protein I yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 21.341 21.733 2 3.0656E-09 6419 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 196.88 178.44 236290000 39177000 44053000 42026000 32732000 37617000 40683000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22665 76 21952 421916;421917;421918;421919;421920;421921 259086;259087 259086 2 VVDQLAHIDLTLAQAVAK Unmodified 1904.0731 0.073111949 1174 P21179 katE Catalase HPII yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 46.501 44.982 2;3 1.9969E-22 22051 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 224.59 204.01 1013100000 167350000 159950000 136400000 1298600 1322700 1630100 133850000 119340000 115160000 1380600 0 0 17477000 16060000 19885000 0 0 0 43761000 39263000 38938000 0 0 0 22666 1174 21953 421922;421923;421924;421925;421926;421927;421928;421929;421930;421931;421932;421933;421934;421935;421936;421937;421938;421939;421940;421941;421942;421943;421944;421945;421946;421947;421948 259088;259089;259090;259091;259092;259093;259094;259095;259096;259097 259093 9 VVDTAESHSLNLTYR Unmodified 1703.8479 0.84786304 411 P0A898 ybeY Endoribonuclease YbeY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1 2 2 1 2 1 2 23.394 22.688 2;3 1.2703E-45 10143 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 327.3 313.49 798400000 17179000 127380000 114230000 0 0 0 112600000 17259000 16805000 0 0 0 77270000 70292000 8577600 0 0 0 101470000 19781000 115550000 0 0 0 22667 411 21954 421949;421950;421951;421952;421953;421954;421955;421956;421957;421958;421959;421960;421961;421962;421963;421964;421965;421966;421967 259098;259099;259100;259101;259102;259103;259104;259105;259106;259107;259108;259109;259110 259098 12 VVEALMAR Unmodified 887.48987 0.48987281 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 21.711 21.655 2 0.0034654 9025 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 91.906 71.046 204300000 21886000 0 0 0 0 0 15513000 16483000 15554000 0 719260 0 16742000 16629000 18478000 0 0 0 26127000 28441000 27725000 0 0 0 22668 849 21955 421968;421969;421970;421971;421972;421973;421974;421975;421976;421977;421978 259111 259111 1 VVEATLSAK Unmodified 916.52295 0.52294707 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 1 1 1 1 1 14.378 15.177 2 0.0011011 4985 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.162 62.55 359920000 24069000 23484000 41193000 318080 300230 0 28371000 31833000 30208000 0 0 0 24342000 21874000 17375000 0 0 0 46237000 36280000 34037000 0 0 0 22669 691 21956 421979;421980;421981;421982;421983;421984;421985;421986;421987;421988;421989;421990;421991;421992;421993 259112;259113;259114;259115;259116;259117;259118;259119;259120;259121;259122 259119 3 VVEEANNVDIR Unmodified 1256.6361 0.63607935 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 18.181 18.433 2 0.0010786 5576 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 82.749 72.969 11994000 0 0 0 0 0 0 0 0 0 0 1622000 0 0 0 0 0 0 0 4076500 3686800 0 1441000 0 1168100 22670 1932 21957 421994;421995;421996;421997;421998 259123 259123 1 VVEEAPAPGITPELR Unmodified 1576.8461 0.84607213 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 3 2 2 1 1 1 3 3 2 2 2 2 1 1 1 32.888 31.335 2;3 5.1368E-12 14812 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 176.42 167.7 4283000000 257520000 246660000 190940000 4429900 3747700 4366500 321660000 288360000 312710000 5227500 5494600 5346000 377830000 363330000 336230000 0 0 0 513710000 506960000 519640000 7332900 6110900 5389400 22671 1236 21958 421999;422000;422001;422002;422003;422004;422005;422006;422007;422008;422009;422010;422011;422012;422013;422014;422015;422016;422017;422018;422019;422020;422021;422022;422023;422024;422025;422026;422027;422028;422029;422030;422031;422032;422033;422034;422035;422036 259124;259125;259126;259127;259128;259129;259130;259131;259132;259133;259134;259135;259136;259137;259138;259139;259140;259141;259142;259143;259144;259145;259146;259147 259139 24 VVEEAPAPGITPELRR Unmodified 1732.9472 0.94718315 1236 P24182 accC Biotin carboxylase yes yes 0 0 1 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 25.68 24.596 3 0.15431 8028 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 16.996 14.871 16932000 0 0 0 2069800 1906500 2004900 0 0 0 3194400 2125500 0 0 0 0 4553800 0 1077300 0 0 0 0 0 0 22672 1236 21959 422037;422038;422039;422040;422041;422042;422043 259148 259148 1 VVEETLVSHLLK Unmodified 1365.7868 0.78676633 1966 Q46920 queF NADPH-dependent 7-cyano-7-deazaguanine reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 35.311 33.823 2;3 1.5763E-05 16276 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.75 123.22 751830000 84810000 64956000 60104000 0 1300500 836200 75462000 57204000 67708000 0 0 0 45669000 48125000 43814000 705720 0 0 58199000 71015000 71925000 0 0 0 22673 1966 21960 422044;422045;422046;422047;422048;422049;422050;422051;422052;422053;422054;422055;422056;422057;422058;422059;422060;422061;422062;422063;422064;422065;422066;422067;422068;422069;422070 259149;259150;259151;259152;259153;259154;259155;259156;259157;259158;259159;259160;259161;259162;259163;259164;259165;259166;259167;259168;259169;259170;259171;259172 259161 24 VVEGSPK Unmodified 714.3912 0.39120462 842 P0AE91 creA Protein CreA yes yes 0 0 0 By MS/MS By matching By matching By matching 1 1 1 1 8.2936 9.0812 2 0.063076 2150 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.648 6.123 16859000 3954700 5469800 6770900 0 0 0 0 0 0 0 0 0 0 663380 0 0 0 0 0 0 0 0 0 0 22674 842 21961 422071;422072;422073;422074 259173 259173 1 VVEHPHILDIAQQAMR Unmodified 1855.9727 0.9726864 1333 P29745 pepT Peptidase T yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 3 3 3 3 3 3 3 3 3 33.084 31.636 2;3;4 1.6982E-39 15008 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 205.27 201.43 1590100000 182900000 172670000 156820000 399560 0 215120 178070000 178510000 169910000 0 0 0 144320000 106780000 93825000 0 0 0 66148000 73902000 65652000 0 0 0 22675 1333 21962 422075;422076;422077;422078;422079;422080;422081;422082;422083;422084;422085;422086;422087;422088;422089;422090;422091;422092;422093;422094;422095;422096;422097;422098;422099;422100;422101;422102;422103;422104;422105;422106;422107;422108;422109;422110;422111;422112 259174;259175;259176;259177;259178;259179;259180;259181;259182;259183;259184;259185;259186;259187;259188;259189;259190;259191;259192;259193;259194;259195;259196;259197;259198;259199 259186 26 VVEPLITLAK Unmodified 1081.6747 0.67469669 984 P0AG44 rplQ 50S ribosomal protein L17 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.566 35.951 2 0.00051539 12096 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 98.033 98.033 6297300000 767380000 794220000 669800000 42982000 42548000 42828000 276960000 280620000 273390000 76575000 62445000 69563000 302850000 296200000 263610000 83109000 41285000 46506000 554250000 534290000 550030000 73828000 81980000 70041000 22676 984 21963 422113;422114;422115;422116;422117;422118;422119;422120;422121;422122;422123;422124;422125;422126;422127;422128;422129;422130;422131;422132;422133;422134;422135;422136 259200;259201;259202;259203;259204;259205;259206;259207;259208;259209;259210;259211;259212;259213;259214;259215;259216;259217;259218;259219;259220;259221;259222;259223;259224 259201 25 VVFCGINPGLSSAGTGFPFAHPANR Unmodified 2572.2645 0.26451132 519 P0A9H1 mug G/U mismatch-specific DNA glycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.582 45.056 3 1.5099E-15 22036 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 148.04 145.6 568760000 97960000 106310000 94556000 2303800 0 1702600 43124000 42832000 31639000 3208500 0 0 24357000 16809000 24320000 0 0 0 25795000 27795000 26048000 0 0 0 22677 519 21964 422137;422138;422139;422140;422141;422142;422143;422144;422145;422146;422147;422148;422149;422150;422151 259225;259226;259227;259228;259229;259230;259231;259232;259233 259229 8 VVFEHITTK Unmodified 1072.5917 0.59169534 104 P05020 pyrC Dihydroorotase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 16.945 17.704 2;3 0.00050322 5942 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 113.26 99.989 2396400000 357220000 394560000 331170000 1250400 836390 0 136740000 130370000 125470000 0 0 0 116420000 115900000 107800000 0 0 0 196720000 201560000 180350000 0 0 0 22678 104 21965 422152;422153;422154;422155;422156;422157;422158;422159;422160;422161;422162;422163;422164;422165;422166;422167;422168;422169;422170;422171;422172;422173;422174;422175;422176;422177 259234;259235;259236;259237;259238;259239;259240;259241;259242;259243;259244;259245;259246;259247;259248;259249;259250;259251;259252 259252 19 VVFLPDYCVSAAEK Unmodified 1596.7858 0.78578005 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.533 40.029 2 1.7914E-05 16251 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 99.522 98.483 503090000 0 0 0 0 0 0 0 0 0 116330000 114930000 98434000 0 0 0 29930000 29819000 24259000 0 0 0 31096000 30433000 27850000 22679 30 21966 422178;422179;422180;422181;422182;422183;422184;422185;422186;422187;422188;422189;422190;422191;422192;422193;422194 259253;259254;259255;259256;259257;259258;259259;259260;259261;259262;259263;259264;259265;259266;259267;259268;259269 259256 17 VVFMASTEGGVEIEK Unmodified 1594.7913 0.79125936 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 4 4 4 2 1 1 1 3 4 6 5 3 40.657 39.064 2 4.3274E-06 18135 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.56 127.03 235710000 37174000 28478000 25880000 0 0 0 5002400 3320300 2500600 0 0 0 2594200 13216000 12549000 0 0 0 46920000 37684000 20393000 0 0 0 22680 392 21967 422195;422196;422197;422198;422199;422200;422201;422202;422203;422204;422205;422206;422207;422208;422209;422210;422211;422212;422213;422214;422215;422216;422217;422218;422219;422220;422221;422222;422223;422224;422225;422226;422227;422228;422229;422230;422231;422232 259270;259271;259272;259273;259274;259275;259276;259277;259278;259279;259280;259281;259282;259283;259284 259273 6 VVFMNSGTEANETAFK Unmodified 1743.8138 0.81378572 1150 P18335 argD Acetylornithine/succinyldiaminopimelate aminotransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 32.904 31.493 2 2.4971E-10 14786 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 188.96 183.5 65851000 14254000 12319000 12364000 0 0 0 0 5788700 0 0 0 0 0 0 0 0 0 0 4719000 9668800 6738500 0 0 0 22681 1150 21968 422233;422234;422235;422236;422237;422238;422239;422240 259285;259286;259287;259288 259288 4 VVFNEITK Unmodified 948.52803 0.52803245 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.646 22.857 2 0.00029545 9652 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.34 102.94 826640000 57114000 73291000 61899000 0 0 0 78967000 88115000 74980000 8928700 0 0 67683000 61171000 54291000 0 0 6030600 83365000 86372000 0 10695000 13733000 0 22682 124 21969 422241;422242;422243;422244;422245;422246;422247;422248;422249;422250;422251;422252;422253;422254;422255 259289;259290;259291;259292;259293;259294;259295;259296;259297;259298;259299;259300;259301;259302 259300 14 VVFSCPVLEPTGPLHTQFGYHIIK Unmodified 2738.4254 0.42542864 534 P0A9L5 ppiC Peptidyl-prolyl cis-trans isomerase C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 2 2 2 43.777 42.229 3;4 5.3306E-16 20617 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.16 154.08 2704600000 252860000 202190000 205010000 3745500 0 0 276470000 176900000 172100000 0 0 2819900 255110000 178170000 174440000 0 0 0 258640000 255040000 291090000 0 0 0 22683 534 21970 422256;422257;422258;422259;422260;422261;422262;422263;422264;422265;422266;422267;422268;422269;422270;422271;422272;422273;422274;422275;422276;422277;422278;422279;422280;422281 259303;259304;259305;259306;259307;259308;259309;259310;259311;259312;259313;259314;259315;259316;259317;259318;259319;259320;259321;259322;259323;259324;259325 259312 23 VVGAVTQMGLK Unmodified 1101.6216 0.62161526 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.203 24.164 2 0.11042 10444 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 41.427 33.086 382730000 26319000 23538000 23720000 0 0 0 44914000 35977000 35266000 0 0 0 25138000 19955000 19289000 0 0 0 42370000 44765000 41478000 0 0 0 22684 280 21971 422282;422283;422284;422285;422286;422287;422288;422289;422290;422291;422292;422293 259326 259326 0 VVGDDFAK Unmodified 849.42323 0.42323303 1402 P33012 sbmC DNA gyrase inhibitor yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 16.156 16.921 2 0.099488 6058 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 49.325 37.814 46821000 7467600 7579500 5906400 0 0 0 7469400 6959700 5742100 0 0 0 0 2335900 3360100 0 0 0 0 0 0 0 0 0 22685 1402 21972 422294;422295;422296;422297;422298;422299;422300;422301 259327;259328;259329 259327 3 VVGDHMGMLATVMNGLAMR Unmodified 2001.9621 0.96206341 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.479 50.178 3 2.8716E-14 24498 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146.78 137.96 442020000 55023000 51734000 53278000 1325400 1134900 1284700 26415000 25053000 28100000 798650 0 2061300 0 0 51417000 0 0 0 57030000 43726000 43635000 0 0 0 22686 338 21973 422302;422303;422304;422305;422306;422307;422308;422309;422310;422311;422312;422313;422314;422315;422316 259330;259331;259332;259333;259334;259335;259336;259337 259335 8 VVGDVIGK Unmodified 785.4647 0.46470391 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.985 17.474 2 0.011257 6428 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 77.058 42.234 2310700000 130350000 146510000 121010000 3174500 3171300 2509200 221510000 219930000 179400000 43381000 27832000 17298000 142720000 160660000 159040000 7381600 7331800 7233400 239020000 241070000 200940000 10896000 10213000 8079300 22687 882 21974 422317;422318;422319;422320;422321;422322;422323;422324;422325;422326;422327;422328;422329;422330;422331;422332;422333;422334;422335;422336;422337;422338;422339;422340 259338;259339;259340;259341;259342;259343;259344;259345;259346;259347;259348;259349 259341 12 VVGDVVFEDAAK Unmodified 1247.6398 0.63976774 1237 P24186 folD Bifunctional protein FolD;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 32.283 30.837 2 5.7031E-06 13931 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 133.23 106.71 1278100000 295800000 0 0 0 0 0 102830000 104250000 102970000 0 0 1551700 101410000 102100000 101700000 0 0 0 117290000 130350000 117840000 0 0 0 22688 1237 21975 422341;422342;422343;422344;422345;422346;422347;422348;422349;422350;422351 259350;259351;259352;259353;259354;259355;259356 259355 7 VVGEASCGEDAVK Unmodified 1319.6027 0.60273031 848 P0AED5 uvrY Response regulator UvrY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.348 13.997 2 1.6231E-05 4321 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.27 105.54 99753000 14491000 15264000 13384000 1525800 2008100 1685500 14688000 10046000 6949500 2443100 2611900 2615900 0 0 0 0 0 0 8885200 0 0 0 1580700 1575200 22689 848 21976 422352;422353;422354;422355;422356;422357;422358;422359;422360;422361;422362;422363;422364;422365;422366;422367;422368;422369;422370 259357;259358;259359;259360;259361;259362;259363;259364;259365;259366;259367;259368;259369 259364 13 VVGFVLGKPPVSEQK Unmodified 1582.9083 0.90827845 332 P0A7D1 pth Peptidyl-tRNA hydrolase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.447 28.167 3 0.00011961 13008 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.633 76.496 269860000 31373000 33786000 21654000 0 493090 635760 19942000 18078000 19980000 0 0 0 15969000 19186000 15468000 0 0 0 24633000 24923000 23739000 0 0 0 22690 332 21977 422371;422372;422373;422374;422375;422376;422377;422378;422379;422380;422381;422382;422383;422384 259370;259371;259372;259373;259374 259372 5 VVGGAAGLIEEVAASK Unmodified 1469.809 0.80895834 623 P0AB24 efeO Iron uptake system component EfeO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 43.684 42.169 2 9.5483E-05 20604 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.55 90.32 510990000 67306000 69367000 55526000 0 0 0 30285000 22872000 25363000 0 0 0 34025000 29467000 29284000 0 0 0 50034000 46838000 50625000 0 0 0 22691 623 21978 422385;422386;422387;422388;422389;422390;422391;422392;422393;422394;422395;422396 259375;259376;259377;259378;259379;259380;259381;259382;259383;259384;259385;259386 259381 12 VVGLEINANHVR Unmodified 1319.731 0.73098279 1942 P77781 menI 1,4-dihydroxy-2-naphthoyl-CoA hydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 1 1 2 2 1 21.365 21.745 2;3 1.4538E-06 8635 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 136.96 135.71 273540000 51536000 67447000 54674000 0 0 585870 0 2564200 0 0 0 0 15518000 9767500 15926000 0 0 0 18841000 17682000 19003000 0 0 0 22692 1942 21979 422397;422398;422399;422400;422401;422402;422403;422404;422405;422406;422407;422408;422409;422410;422411;422412;422413 259387;259388;259389;259390;259391;259392;259393;259394;259395;259396;259397 259391 6 VVGLELAK Unmodified 827.51165 0.5116541 1469 P37351 rpiB Ribose-5-phosphate isomerase B yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.932 24.811 2 0.05706 10559 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 58.286 40.591 171670000 14763000 8710900 11609000 0 0 0 20698000 18924000 16178000 0 0 0 14227000 9668700 7263900 0 0 0 20920000 15078000 13626000 0 0 0 22693 1469 21980 422414;422415;422416;422417;422418;422419;422420;422421;422422;422423;422424;422425 259398;259399;259400;259401;259402;259403;259404;259405 259405 6 VVGLEYR Unmodified 834.45995 0.45995289 1437 P35340 ahpF Alkyl hydroperoxide reductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 31.043 30.547 2 0.00080871 8793 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 144.29 120.5 3453700000 117780000 122360000 96317000 0 0 0 336900000 371950000 364690000 37628000 38121000 34211000 200700000 193790000 193130000 172150000 126750000 140580000 244910000 240920000 224140000 66492000 62860000 67303000 22694 1437 21981 422426;422427;422428;422429;422430;422431;422432;422433;422434;422435;422436;422437;422438;422439;422440;422441;422442;422443;422444;422445;422446;422447 259406;259407;259408;259409;259410;259411;259412;259413;259414;259415;259416;259417;259418;259419;259420;259421;259422;259423 259410 18 VVGQLGQVLGPR Unmodified 1221.7194 0.71935547 353 P0A7L0 rplA 50S ribosomal protein L1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 31.463 30.107 2;3 1.805E-08 11204 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 211.48 209.08 11331000000 1513400000 1349000000 1216100000 62475000 56269000 59077000 465500000 434320000 479050000 129100000 107390000 118090000 606770000 595470000 676990000 91534000 66681000 78528000 1002200000 933000000 1080400000 72491000 69130000 68360000 22695 353 21982 422448;422449;422450;422451;422452;422453;422454;422455;422456;422457;422458;422459;422460;422461;422462;422463;422464;422465;422466;422467;422468;422469;422470;422471;422472;422473;422474;422475;422476;422477;422478;422479;422480;422481;422482;422483;422484;422485;422486;422487;422488;422489;422490;422491;422492 259424;259425;259426;259427;259428;259429;259430;259431;259432;259433;259434;259435;259436;259437;259438;259439;259440;259441;259442;259443;259444;259445;259446;259447;259448;259449;259450;259451;259452;259453;259454;259455;259456;259457;259458;259459;259460;259461;259462 259441 33 VVGTEAR Unmodified 730.39735 0.39735263 1736 P69503 apt Adenine phosphoribosyltransferase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 2 1 1 9.4487 9.9931 2 0.00029567 2396 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 158.53 121.95 2225600000 0 224510000 222310000 0 0 0 46972000 41572000 47286000 9213800 8577000 9927700 284260000 251940000 204670000 14728000 4098700 5040100 273060000 266540000 267540000 43338000 0 0 22696 1736 21983 422493;422494;422495;422496;422497;422498;422499;422500;422501;422502;422503;422504;422505;422506;422507;422508;422509;422510;422511;422512;422513 259463;259464;259465;259466;259467;259468;259469;259470;259471 259470 9 VVGVAGGAEK Unmodified 885.49198 0.4919813 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 5.3052 6.1544 2 0.059914 1046 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 46.426 29.133 598940000 108830000 107370000 73939000 0 0 0 38911000 59161000 51070000 0 0 0 29121000 26138000 26594000 0 0 0 30043000 24409000 23356000 0 0 0 22697 1817 21984 422514;422515;422516;422517;422518;422519;422520;422521;422522;422523;422524;422525 259472;259473;259474;259475;259476;259477 259473 6 VVGYMVSPLLWK Unmodified 1390.7683 0.7682795 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.393 50.25 2 3.261E-05 20039 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 113.22 102.7 541210000 27677000 28326000 0 1356300 1443800 1773300 35465000 33123000 32139000 5146000 5338200 5991800 49906000 43882000 47987000 8809200 7495800 9548200 53628000 61311000 52906000 9489500 9569800 8896900 22698 124 21985 422526;422527;422528;422529;422530;422531;422532;422533;422534;422535;422536;422537;422538;422539;422540;422541;422542;422543;422544;422545;422546;422547;422548 259478;259479;259480;259481;259482;259483;259484;259485;259486;259487 259485 10 VVGYSQDYSNAIVEAVK Unmodified 1840.9207 0.92069363 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 2 2 2 2 2 39.978 38.357 2;3 1.0879E-18 18711 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 185.27 184.86 1215600000 286780000 283110000 268840000 0 0 0 42477000 41197000 34328000 0 0 0 34553000 34341000 32508000 0 0 0 52796000 50740000 53911000 0 0 0 22699 1501 21986 422549;422550;422551;422552;422553;422554;422555;422556;422557;422558;422559;422560;422561;422562;422563;422564;422565;422566;422567;422568;422569;422570 259488;259489;259490;259491;259492;259493;259494;259495;259496;259497;259498;259499;259500;259501;259502;259503;259504;259505;259506 259496 19 VVGYSQDYSNAIVEAVKK Unmodified 1969.0157 0.015656649 1501 P37902 gltI Glutamate/aspartate periplasmic-binding protein yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 34.254 32.797 3 0.00098512 15690 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.337 61.687 115650000 29563000 29642000 23443000 0 0 0 3553300 6360300 4655500 0 0 0 3617800 0 3113000 0 0 0 0 6834600 4866800 0 0 0 22700 1501 21987 422571;422572;422573;422574;422575;422576;422577;422578;422579;422580 259507 259507 1 VVHGDELGR Unmodified 980.50394 0.50394297 983 P0AG40 ribF Riboflavin biosynthesis protein RibF;Riboflavin kinase;FMN adenylyltransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 11.186 12.018 2 0.0056668 3083 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.665 58.283 124360000 12402000 14205000 10340000 0 0 0 10121000 9458800 8123300 0 0 0 8726000 7441400 8767800 0 0 0 9861700 13514000 11396000 0 0 0 22701 983 21988 422581;422582;422583;422584;422585;422586;422587;422588;422589;422590;422591;422592 259508;259509 259509 2 VVIAESFER Unmodified 1048.5553 0.55530983 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.581 25.486 2 1.4386E-05 11461 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.75 138.61 1937600000 486500000 466350000 419990000 1373600 1260100 1077000 103310000 100030000 102820000 0 0 0 27358000 24373000 25593000 0 0 0 63229000 59164000 55185000 0 0 0 22702 1254 21989 422593;422594;422595;422596;422597;422598;422599;422600;422601;422602;422603;422604;422605;422606;422607 259510;259511;259512 259510 2 VVIAGRPNAGK Unmodified 1080.6404 0.64037687 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.542 12.375 2 0.0036229 3296 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.429 87.687 109870000 8027200 7504000 6868500 0 0 0 10571000 10852000 9367500 0 0 0 8273100 10604000 9375400 0 0 0 10072000 10345000 8014100 0 0 0 22703 1256 21990 422608;422609;422610;422611;422612;422613;422614;422615;422616;422617;422618;422619 259513;259514;259515;259516 259515 2 VVIAISPGDSR Unmodified 1112.619 0.61897272 1964 Q46893 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.461 25.407 2 0.00013265 11482 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.62 106.47 171760000 12834000 11287000 9441500 4729300 0 4573500 0 0 0 0 0 0 15340000 12549000 14532000 0 0 0 17474000 18373000 16094000 11554000 10902000 12079000 22704 1964 21991 422620;422621;422622;422623;422624;422625;422626;422627;422628;422629;422630;422631;422632;422633 259517;259518;259519;259520;259521;259522;259523;259524 259519 8 VVIDESVIDGQSK Unmodified 1387.7195 0.71947463 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 30.055 28.649 2 1.8719E-17 12832 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 211.86 203.17 921300000 74148000 76447000 61966000 0 0 0 82525000 68153000 86984000 0 0 958890 72868000 77506000 66735000 0 0 0 83756000 88625000 80628000 0 0 0 22705 244 21992 422634;422635;422636;422637;422638;422639;422640;422641;422642;422643;422644;422645;422646 259525;259526;259527;259528;259529;259530;259531;259532;259533;259534;259535;259536 259535 12 VVIDESVIDGQSKPLLIYGKPEAQQASGE Unmodified 3069.587 0.58701048 244 P0A6H1 clpX ATP-dependent Clp protease ATP-binding subunit ClpX yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.65 40.972 3 1.7472E-11 20319 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 129.57 123.97 1448700000 125390000 97673000 105260000 4931200 4679100 6235700 107770000 112870000 106080000 22919000 15529000 16492000 115220000 88348000 103590000 6196700 0 7025900 139990000 129830000 127770000 4919500 0 0 22706 244 21993 422647;422648;422649;422650;422651;422652;422653;422654;422655;422656;422657;422658;422659;422660;422661;422662;422663;422664;422665;422666;422667 259537;259538;259539;259540;259541;259542;259543;259544;259545;259546;259547;259548;259549;259550;259551 259543 15 VVIGASIR Unmodified 813.50724 0.50723743 716 P0ACB4 hemG Protoporphyrinogen IX dehydrogenase [menaquinone] yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.587 20.77 2 0.0023006 8455 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 101.64 79.512 121590000 3760300 3085900 2645200 2939500 2618200 2699400 11100000 9663900 11449000 9977900 8613700 8358100 3956800 3639100 4646900 0 1300000 0 6613100 5723000 7424900 4522400 3487900 3363600 22707 716 21994 422668;422669;422670;422671;422672;422673;422674;422675;422676;422677;422678;422679;422680;422681;422682;422683;422684;422685;422686;422687;422688;422689 259552;259553;259554;259555;259556;259557 259553 6 VVIGPVK Unmodified 710.46906 0.46906101 1329 P29131 ftsN Cell division protein FtsN yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.733 18.29 2 0.1313 5003 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 48.174 30.903 87612000 8515600 7303200 5632500 1896900 1639400 1895900 7909400 6690300 4630500 0 1077700 1311700 4076500 3998300 3630000 0 0 0 7355800 6751700 10750000 1595700 951180 0 22708 1329 21995 422690;422691;422692;422693;422694;422695;422696;422697;422698;422699;422700;422701;422702;422703;422704;422705;422706;422707;422708 259558 259558 1 VVILSAGTGNPFFTTDSAACLR Unmodified 2296.1522 0.15216691 338 P0A7E9 pyrH Uridylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 51.686 50.437 2;3 6.412E-35 24654 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 283.45 270.9 688200000 51733000 24458000 48525000 0 0 0 78893000 76736000 73950000 0 0 0 47509000 46312000 38592000 0 0 0 73543000 61082000 66865000 0 0 0 22709 338 21996 422709;422710;422711;422712;422713;422714;422715;422716;422717;422718;422719;422720;422721;422722;422723;422724;422725;422726;422727;422728;422729;422730;422731 259559;259560;259561;259562;259563;259564;259565;259566;259567;259568;259569;259570;259571;259572;259573;259574;259575;259576;259577;259578;259579;259580;259581 259573 23 VVILYPR Unmodified 858.53272 0.5327239 52 P00934 thrC Threonine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.973 27.482 2 0.00084899 12461 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 143.22 129.24 1529000000 226500000 233200000 168580000 2432500 1907000 2201800 74817000 80213000 64580000 1322000 1367400 1829700 75786000 73816000 76021000 0 0 0 150200000 150910000 139360000 1009500 1608000 1291500 22710 52 21997 422732;422733;422734;422735;422736;422737;422738;422739;422740;422741;422742;422743;422744;422745;422746;422747;422748;422749;422750;422751;422752 259582;259583;259584;259585;259586;259587;259588;259589;259590;259591;259592;259593;259594;259595;259596;259597 259594 16 VVINKDTTTIIDGVGEEAAIQGR Unmodified 2398.2704 0.27036779 240 P0A6F5 groL 60 kDa chaperonin yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 1 1 1 1 37.911 36.079 3;4 4.0231E-22 14280 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 171.83 169.19 271910000 0 0 0 37042000 36496000 38493000 0 0 0 26971000 28526000 19981000 0 0 0 0 5616500 6462600 0 0 0 21914000 24302000 26108000 22711 240 21998 422753;422754;422755;422756;422757;422758;422759;422760;422761;422762;422763;422764;422765;422766;422767;422768 259598;259599;259600;259601;259602;259603;259604;259605;259606;259607;259608;259609;259610;259611 259601 14 VVISGLQK Unmodified 842.52255 0.52255314 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.908 19.243 2 0.00022905 6842 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 151.17 114.99 1140900000 42676000 44634000 32939000 15121000 10306000 12291000 99257000 108460000 98541000 53041000 52958000 45768000 487140 55482000 50193000 10181000 6351100 6863300 112150000 115080000 93815000 24655000 25424000 24265000 22712 826 21999 422769;422770;422771;422772;422773;422774;422775;422776;422777;422778;422779;422780;422781;422782;422783;422784;422785;422786;422787;422788;422789;422790;422791;422792 259612;259613;259614;259615;259616;259617;259618;259619;259620;259621;259622;259623;259624;259625;259626;259627;259628;259629;259630;259631 259630 20 VVITATQMLDSMIK Unmodified 1548.8255 0.82553638 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 51.79 50.542 2;3 1.9592E-11 23640 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 212.72 206.75 3196300000 222760000 221010000 235140000 0 0 0 376970000 334990000 316080000 0 0 0 293810000 269730000 269150000 0 0 0 233690000 200340000 222650000 0 0 0 22713 771 22000 422793;422794;422795;422796;422797;422798;422799;422800;422801;422802;422803;422804;422805;422806;422807;422808;422809;422810;422811;422812;422813;422814;422815;422816 259632;259633;259634;259635;259636;259637;259638;259639;259640;259641;259642;259643;259644;259645;259646;259647;259648;259649;259650;259651;259652;259653;259654;259655 259652 24 VVITPGEPAGIGPDLVVQLAQR Unmodified 2228.2529 0.25286723 1158 P19624 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 53.792 52.372 3 0.014855 25900 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 50.916 42.924 77417000 10228000 9443300 8262800 0 0 0 6409300 0 3125400 0 0 0 6422200 5322500 5061700 0 0 0 8467100 7702900 6972200 0 0 0 22714 1158 22001 422817;422818;422819;422820;422821;422822;422823;422824;422825;422826;422827 259656 259656 0 VVIVGCGAQGLNQGLNMR Unmodified 1884.9662 0.96622081 119 P05793 ilvC Ketol-acid reductoisomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 2 2 2 2 1 2 2 1 36.918 35.206 2;3 2.7447E-29 17068 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 282.39 266.02 133840000 24172000 20808000 34023000 0 0 0 13593000 14814000 11637000 0 0 0 3397600 4069700 4627300 0 0 0 2696100 0 0 0 0 0 22715 119 22002 422828;422829;422830;422831;422832;422833;422834;422835;422836;422837;422838;422839;422840;422841;422842;422843 259657;259658;259659;259660;259661;259662 259660 5 VVKPGGWVITATPGPR Unmodified 1633.9304 0.93041088 1453 P36999 rlmA 23S rRNA (guanine(745)-N(1))-methyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.705 28.382 3 0.00014225 13174 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 70.26 66.74 159450000 15591000 18893000 19514000 0 0 0 9403400 12307000 13406000 0 0 0 8422300 10345000 10392000 0 0 0 11105000 14657000 15412000 0 0 0 22716 1453 22003 422844;422845;422846;422847;422848;422849;422850;422851;422852;422853;422854;422855 259663;259664;259665;259666;259667;259668;259669;259670;259671 259666 8 VVLADINESMLK Unmodified 1330.7166 0.71663786 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 40.331 38.439 2 2.0562E-05 15304 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 154.01 146.95 293690000 0 0 0 16531000 19518000 18106000 0 0 0 30622000 23104000 20165000 0 0 0 2281900 0 0 131360000 0 0 9890100 8805400 13309000 22717 408 22004 422856;422857;422858;422859;422860;422861;422862;422863;422864;422865;422866 259672;259673;259674;259675;259676;259677;259678;259679;259680 259673 9 VVLAIANDSHLMADLPWIAESIQLR Unmodified 2774.4789 0.47892077 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.038 53.572 3 3.1989E-10 26392 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.9 116.02 1098500000 175490000 158240000 160880000 0 0 0 75569000 71222000 78950000 0 0 0 55809000 58015000 41448000 0 0 0 88434000 66301000 57252000 5234500 5665200 0 22718 43 22005 422867;422868;422869;422870;422871;422872;422873;422874;422875;422876;422877;422878;422879;422880 259681;259682;259683;259684;259685;259686;259687;259688;259689;259690 259688 10 VVLASNGSQVTVSPR Unmodified 1512.826 0.82600539 478 P0A905 slyB Outer membrane lipoprotein SlyB yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.332 23.431 2 1.4974E-20 10317 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 220.1 201.35 312360000 8068300 8780700 6749200 9211500 10244000 9627000 8421100 7488500 6896100 37241000 34565000 31929000 7932600 6346200 7589400 10270000 7436200 6854300 9433300 9551800 10141000 18525000 20033000 19023000 22719 478 22006 422881;422882;422883;422884;422885;422886;422887;422888;422889;422890;422891;422892;422893;422894;422895;422896;422897;422898;422899;422900;422901;422902;422903;422904 259691;259692;259693;259694;259695;259696;259697;259698;259699;259700;259701;259702;259703;259704;259705;259706;259707;259708;259709 259701 19 VVLATGNVGK Unmodified 956.56548 0.56548059 1600 P52061 rdgB dITP/XTP pyrophosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 16.893 17.596 2 0.00013167 5983 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 127.56 107.01 1237200000 76093000 73924000 67756000 0 0 0 124740000 132390000 123720000 0 0 0 78845000 85147000 71197000 0 0 0 145620000 126440000 130550000 775970 0 0 22720 1600 22007 422905;422906;422907;422908;422909;422910;422911;422912;422913;422914;422915;422916;422917 259710;259711;259712;259713;259714;259715;259716;259717;259718 259716 9 VVLDDDVFK Unmodified 1048.5441 0.54407645 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 34.838 33.32 2 0.0067475 15951 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 69.825 64.166 159140000 0 0 0 0 0 0 19246000 16150000 17757000 0 0 0 16456000 16079000 15403000 0 0 0 19345000 20658000 18046000 0 0 0 22721 193 22008 422918;422919;422920;422921;422922;422923;422924;422925;422926 259719;259720 259719 2 VVLESLGSIK Unmodified 1043.6227 0.62266112 715 P0ACB2 hemB Delta-aminolevulinic acid dehydratase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.43 31.09 2 0.00031842 14651 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.87 84.27 2041800000 153340000 156380000 162370000 0 0 0 190130000 157030000 160460000 0 0 0 169160000 152030000 167590000 0 0 0 189000000 191720000 192590000 0 0 0 22722 715 22009 422927;422928;422929;422930;422931;422932;422933;422934;422935;422936;422937;422938 259721;259722;259723;259724;259725;259726;259727;259728;259729;259730 259725 10 VVLFGPFATFSTK Unmodified 1412.7704 0.77038799 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.511 52.392 2 0.00078611 19344 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 89.548 85.785 119020000 0 0 0 2935600 2705500 3789800 0 0 0 9568700 5124500 5849000 3956600 2313400 2490400 6671300 4602400 6699500 0 0 10802000 18833000 14952000 17722000 22723 1435 22010 422939;422940;422941;422942;422943;422944;422945;422946;422947;422948;422949;422950;422951;422952;422953;422954 259731 259731 0 VVLPEGEEAR Unmodified 1097.5717 0.57168818 1872 P76558 maeB NADP-dependent malic enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 18.845 19.41 2 0.00030192 7348 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 111.95 102.36 812140000 110410000 108190000 92709000 0 0 0 63705000 65649000 58024000 0 0 0 39417000 41423000 38647000 0 0 0 64915000 67130000 61931000 0 0 0 22724 1872 22011 422955;422956;422957;422958;422959;422960;422961;422962;422963;422964;422965;422966 259732;259733;259734;259735;259736;259737 259734 6 VVLQAATDHHLEICGGGTHPFQK Unmodified 2514.2438 0.24377588 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 24.353 23.451 4 0.0016623 10618 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 60.398 55.873 126200000 40488000 34910000 0 0 0 0 20349000 16241000 12844000 0 0 0 0 0 0 1372200 0 0 0 0 0 0 0 0 22725 1887 22012 422967;422968;422969;422970;422971;422972 259738;259739 259738 2 VVLVSDR Unmodified 786.45995 0.45995289 653 P0ABE2 bolA Protein BolA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 2 2 1 16.141 16.777 2 0.0010429 5843 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 138.07 109.55 1471500000 140440000 1289600 142320000 0 349950 0 182660000 190660000 158140000 1520900 1907400 2063700 108510000 114880000 89453000 1480100 898280 1269400 137310000 117190000 79115000 0 0 0 22726 653 22013 422973;422974;422975;422976;422977;422978;422979;422980;422981;422982;422983;422984;422985;422986;422987;422988;422989;422990;422991;422992;422993;422994;422995;422996 259740;259741;259742;259743;259744;259745;259746 259740 7 VVLYGSGK Unmodified 821.4647 0.46470391 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.886 16.452 2 0.0039041 4549 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 89.142 78.166 255190000 13245000 15175000 12548000 0 933810 1025100 18701000 17713000 18183000 3761000 3942600 3120300 11703000 12556000 9536200 21880000 21614000 20433000 16376000 15495000 15694000 0 0 1555100 22727 222 22014 422997;422998;422999;423000;423001;423002;423003;423004;423005;423006;423007;423008;423009;423010;423011;423012;423013;423014;423015;423016;423017 259747;259748;259749;259750;259751;259752;259753;259754;259755 259747 9 VVLYGSGKENIEFK Unmodified 1581.8403 0.84025847 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 26.213 25.794 3 0.004419 8020 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 59.227 58.616 13796000 0 0 0 0 0 0 0 0 0 0 0 684680 0 0 0 4942800 4255400 3913100 0 0 0 0 0 0 22728 222 22015 423018;423019;423020;423021 259756;259757;259758 259757 3 VVMCSGK Unmodified 779.36698 0.36698048 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 11.049 11.628 2 0.026174 2373 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 70.912 64.526 358620000 63260000 0 0 0 0 0 38065000 34615000 41034000 0 0 0 0 0 0 0 0 0 0 0 163610000 6932600 6163300 4941500 22729 937 22016 423022;423023;423024;423025;423026;423027;423028;423029;423030;423031;423032 259759;259760;259761;259762;259763;259764 259759 6 VVMEKPLGTSLATSQEINDQVGEYFEECQVYR Unmodified 3718.7495 0.74947749 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 49.43 48.065 3;4 2.1436E-43 22529 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 210.11 210.08 1854600000 144860000 128990000 133330000 0 0 0 146060000 152330000 138550000 0 0 0 185950000 186380000 147190000 0 0 0 184190000 152290000 154500000 0 0 0 22730 702 22017 423033;423034;423035;423036;423037;423038;423039;423040;423041;423042;423043;423044;423045;423046;423047;423048;423049;423050;423051;423052;423053;423054;423055;423056 259765;259766;259767;259768;259769;259770;259771;259772;259773;259774;259775;259776;259777;259778;259779;259780;259781;259782;259783;259784;259785;259786;259787;259788 259785 24 VVMTADAVK Unmodified 932.5001 0.50010314 1630 P60723 rplD 50S ribosomal protein L4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.476 17.028 2 0.00069069 4936 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 103.74 67.344 6221800000 760600000 815800000 785080000 26007000 22745000 28370000 283120000 280050000 287110000 22816000 24764000 40207000 379720000 356670000 331740000 66179000 41210000 45505000 504750000 507070000 496890000 31315000 44378000 39739000 22731 1630 22018 423057;423058;423059;423060;423061;423062;423063;423064;423065;423066;423067;423068;423069;423070;423071;423072;423073;423074;423075;423076;423077;423078;423079;423080 259789;259790;259791;259792;259793;259794;259795;259796;259797;259798;259799;259800;259801;259802;259803;259804;259805;259806;259807;259808;259809;259810;259811 259793 23 VVMTEELLPAPIPASK Unmodified 1693.9324 0.93244429 789 P0ADI4 entB Enterobactin synthase component B;Isochorismatase;Aryl carrier protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.46 43.941 2 3.1241E-06 21385 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.12 123.01 450450000 23317000 21608000 18998000 0 0 0 24460000 22103000 20573000 0 0 1343800 36475000 37108000 30962000 0 0 0 68345000 75760000 67967000 0 1425600 0 22732 789 22019 423081;423082;423083;423084;423085;423086;423087;423088;423089;423090;423091;423092;423093;423094 259812;259813;259814;259815;259816;259817;259818;259819;259820;259821;259822;259823 259816 12 VVMTGPSK Oxidation (M) 833.43169 0.43168922 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 1 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 3 3 3 1 1 1 2 1 2 10.183 10.993 2 0.00098738 2514 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 123.69 104.05 1785200000 118320000 58486000 60079000 0 2224900 0 307200000 258770000 249570000 0 0 0 128100000 96407000 82991000 0 0 0 151540000 135860000 135650000 0 0 0 22733 504 22020 423095;423096;423097;423098;423099;423100;423101;423102;423103;423104;423105;423106;423107;423108;423109;423110;423111;423112;423113;423114;423115;423116 259824;259825;259826;259827;259828;259829;259830;259831;259832;259833;259834;259835;259836;259837;259838 259826 308 12 VVMTGPSK Unmodified 817.43677 0.4367746 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.194 12.8 2 0.00029228 3503 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 147.52 115.05 17391000000 939110000 946830000 853000000 2505000 2154500 0 2004900000 2072500000 2070800000 3504000 2425000 2568600 1368600000 1230500000 1275700000 1451100 845310 1051200 1621800000 1589700000 1398500000 1625400 0 1056100 22734 504 22020 423117;423118;423119;423120;423121;423122;423123;423124;423125;423126;423127;423128;423129;423130;423131;423132;423133;423134;423135;423136;423137;423138 259839;259840;259841;259842;259843;259844;259845 259840 7 VVMTNGVFDILHAGHVSYLANAR Unmodified 2483.2743 0.27434773 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 45.632 44.038 4 3.2124E-07 17694 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 101.94 98.952 112540000 0 0 11447000 0 2949200 3190500 10992000 10169000 0 13654000 8705700 0 9309700 7831400 4306900 0 0 0 10628000 10154000 9203600 0 0 0 22735 1880 22021 423139;423140;423141;423142;423143;423144;423145;423146;423147;423148;423149;423150;423151 259846;259847;259848 259847 2 VVNDGIK Unmodified 743.41775 0.41775372 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.957 12.749 2 0.076644 3186 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 58.167 35.131 249350000 27535000 74819000 51966000 0 0 0 15000000 15422000 14960000 0 0 0 9637500 0 0 0 0 0 12575000 13276000 14158000 0 0 0 22736 774 22022 423152;423153;423154;423155;423156;423157;423158;423159;423160;423161 259849 259849 1 VVNDLGR Unmodified 771.4239 0.42390173 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 2 1 12.095 12.981 2 0.001881 3680 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 122.15 68.445 739610000 0 0 0 0 0 0 138030000 125470000 123830000 0 0 0 0 70428000 163420000 0 0 0 118430000 0 0 0 0 0 22737 1450 22023 423162;423163;423164;423165;423166;423167;423168;423169 259850;259851;259852;259853 259851 3 VVNDNAPQTAK Unmodified 1155.5884 0.58840088 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.927 11.517 2 4.6064E-08 2311 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 177.06 154.32 2288400000 194200000 171720000 158860000 13349000 16018000 14826000 198210000 211920000 198110000 56346000 39157000 56661000 112880000 118490000 131050000 10303000 9163900 7678700 243500000 143030000 150500000 12493000 11677000 8303700 22738 502 22024 423170;423171;423172;423173;423174;423175;423176;423177;423178;423179;423180;423181;423182;423183;423184;423185;423186;423187;423188;423189;423190;423191;423192;423193 259854;259855;259856;259857;259858;259859;259860;259861;259862;259863;259864;259865;259866;259867;259868;259869;259870;259871;259872;259873;259874;259875;259876;259877 259859 24 VVNDNAPQTAKEPDYLDIPAFLR Unmodified 2585.3126 0.31256695 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 48.964 47.437 3 1.8734E-10 19283 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 128.88 128.08 230880000 0 0 0 12317000 16615000 16350000 0 0 0 73764000 49556000 19502000 0 0 0 0 0 0 0 0 0 15177000 14046000 13549000 22739 502 22025 423194;423195;423196;423197;423198;423199;423200;423201;423202 259878;259879 259878 2 VVNDNAPQTAKEPDYLDIPAFLRK Unmodified 2713.4075 0.40752997 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 41.433 39.528 4 0.0051057 16137 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 44.632 43.579 153390000 0 0 0 14774000 17048000 16608000 0 0 0 27379000 24017000 24953000 0 0 0 1586500 0 0 0 0 0 3478800 10707000 12839000 22740 502 22026 423203;423204;423205;423206;423207;423208;423209;423210;423211;423212 259880;259881;259882;259883;259884;259885;259886;259887 259880 8 VVNFEGTPDMIGK Unmodified 1405.6912 0.69115139 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.758 33.208 2 8.7595E-06 11435 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 121.83 117.68 510980000 0 0 0 11561000 0 15587000 81025000 78192000 76800000 19414000 18961000 18994000 0 114850000 0 14864000 8990600 8867100 0 0 0 16028000 13181000 13668000 22741 862 22027 423213;423214;423215;423216;423217;423218;423219;423220;423221;423222;423223;423224;423225;423226;423227;423228 259888;259889;259890;259891;259892;259893;259894;259895;259896 259896 7 VVNIASYQVSPNDVVSIR Unmodified 1959.0425 0.042540102 375 P0A7V8 rpsD 30S ribosomal protein S4 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 43.563 42.056 2;3 1.0077E-80 19529 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 326.81 325.5 6191000000 876840000 829410000 699650000 25841000 25337000 24241000 228380000 253600000 261130000 77819000 79266000 72516000 345370000 307690000 281170000 56336000 34916000 36056000 541080000 506570000 498970000 42032000 44847000 41901000 22742 375 22028 423229;423230;423231;423232;423233;423234;423235;423236;423237;423238;423239;423240;423241;423242;423243;423244;423245;423246;423247;423248;423249;423250;423251;423252;423253;423254;423255;423256;423257;423258;423259;423260;423261;423262;423263;423264;423265;423266;423267;423268;423269;423270;423271;423272;423273;423274;423275;423276 259897;259898;259899;259900;259901;259902;259903;259904;259905;259906;259907;259908;259909;259910;259911;259912;259913;259914;259915;259916;259917;259918;259919;259920;259921;259922;259923;259924;259925;259926;259927;259928;259929;259930;259931;259932;259933;259934;259935;259936;259937;259938;259939;259940;259941;259942;259943;259944;259945 259944 49 VVNIINAMEPEMEK Unmodified 1615.795 0.79496453 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.045 41.534 2 1.779E-08 16364 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 152.85 152.85 647010000 37635000 32619000 34228000 1954600 1616900 1560700 43093000 39904000 37465000 25214000 28330000 22241000 36862000 35643000 35225000 14185000 10563000 12314000 49221000 54028000 48316000 14840000 14746000 15204000 22743 1057 22029 423277;423278;423279;423280;423281;423282;423283;423284;423285;423286;423287;423288;423289;423290;423291;423292;423293;423294;423295;423296;423297;423298;423299;423300 259946;259947;259948;259949;259950;259951;259952;259953;259954;259955;259956;259957;259958;259959;259960 259950 12 VVNIINAMEPEMEKLSDEELK Unmodified 2430.2022 0.20221315 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 51.37 50.354 3 7.6427E-11 20179 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 130.36 127.52 110200000 0 0 0 2036400 0 0 0 0 0 14348000 14981000 16954000 0 0 0 9597500 7711000 11031000 0 0 2744700 10856000 9681500 10257000 22744 1057 22030 423301;423302;423303;423304;423305;423306;423307;423308;423309;423310;423311 259961;259962;259963;259964;259965;259966;259967;259968 259966 8 VVNIINAMEPEMEKLSDEELKGK Unmodified 2615.3186 0.31863989 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 47.501 46.317 4 5.0842E-10 17288 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 118.36 117.37 157750000 0 0 0 6662900 0 6263800 0 0 0 12604000 12838000 19543000 0 0 0 21217000 20404000 18436000 0 0 0 14785000 13482000 11516000 22745 1057 22031 423312;423313;423314;423315;423316;423317;423318;423319;423320;423321;423322 259969;259970;259971;259972;259973;259974;259975;259976;259977;259978;259979;259980 259969 12 VVNLQQAIAK Unmodified 1082.6448 0.64479354 1850 P76316 dcyD D-cysteine desulfhydrase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.923 23.801 2 1.7386E-06 10433 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 161.68 146.43 919400000 162370000 151560000 142570000 998100 926530 800480 67652000 68717000 65365000 1142800 1367000 1339100 36108000 33257000 31366000 0 0 0 56442000 46567000 50311000 0 536760 0 22746 1850 22032 423323;423324;423325;423326;423327;423328;423329;423330;423331;423332;423333;423334;423335;423336;423337;423338;423339;423340;423341 259981;259982;259983;259984;259985;259986;259987;259988;259989;259990 259986 10 VVNPELHK Unmodified 934.52362 0.52361577 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.726 12.332 2 0.0009293 3304 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.16 59.601 3520100000 496870000 409020000 422670000 17748000 23340000 19826000 132060000 136400000 135140000 30782000 27030000 28786000 189020000 190890000 159870000 43889000 16556000 15093000 323380000 308390000 320790000 28040000 23029000 21453000 22747 1620 22033 423342;423343;423344;423345;423346;423347;423348;423349;423350;423351;423352;423353;423354;423355;423356;423357;423358;423359;423360;423361;423362;423363;423364;423365 259991;259992;259993;259994;259995;259996;259997;259998;259999;260000;260001;260002;260003;260004;260005;260006;260007;260008;260009;260010;260011;260012;260013;260014 260003 24 VVNTLGAPIDGK Unmodified 1182.6608 0.66083754 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 2 2 2 1 1 1 1 3 3 2 1 1 1 2 3 3 2 2 1 24.101 23.216 2;3 2.9661E-06 9938 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 163.64 160.07 8500700000 313320000 303160000 257510000 36827000 36928000 32133000 531780000 609120000 597080000 162510000 163700000 169000000 744370000 704930000 739820000 32541000 19544000 20667000 895470000 914890000 822450000 131300000 139580000 122060000 22748 645 22034 423366;423367;423368;423369;423370;423371;423372;423373;423374;423375;423376;423377;423378;423379;423380;423381;423382;423383;423384;423385;423386;423387;423388;423389;423390;423391;423392;423393;423394;423395;423396;423397;423398;423399;423400;423401;423402;423403;423404;423405;423406;423407;423408;423409;423410 260015;260016;260017;260018;260019;260020;260021;260022;260023;260024;260025;260026;260027;260028;260029;260030;260031;260032;260033;260034;260035;260036;260037;260038;260039;260040 260035 23 VVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIER Unmodified 3313.7307 0.73065502 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 48.562 47.443 3;4 4.046E-25 18825 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 164.7 163.87 941590000 0 0 0 52389000 64050000 54886000 0 0 0 72807000 78477000 10649000 0 0 0 62437000 52558000 48973000 0 0 0 158140000 142600000 143620000 22749 645 22035 423411;423412;423413;423414;423415;423416;423417;423418;423419;423420;423421;423422;423423;423424;423425;423426;423427;423428;423429;423430;423431;423432;423433 260041;260042;260043;260044;260045;260046;260047;260048;260049;260050;260051;260052;260053;260054;260055;260056;260057;260058;260059;260060;260061 260051 21 VVNTPTR Unmodified 785.43955 0.43955179 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.9 11.373 2 0.0023399 2331 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 114.02 42.002 298390000 0 0 0 18833000 22722000 19039000 12595000 11788000 12556000 22739000 18518000 21081000 0 7019600 0 21507000 21806000 19543000 0 0 0 19937000 25990000 22713000 22750 80 22036 423434;423435;423436;423437;423438;423439;423440;423441;423442;423443;423444;423445;423446;423447;423448;423449 260062;260063;260064 260063 3 VVNVDFVMLTEYAADIK Unmodified 1925.9809 0.98085105 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 54.966 53.508 2 1.7866E-11 26512 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 157.86 149.56 344460000 0 0 14751000 0 0 0 53534000 57794000 0 0 0 0 43671000 52931000 49727000 0 0 0 0 38127000 33924000 0 0 0 22751 1487 22037 423450;423451;423452;423453;423454;423455;423456;423457;423458 260065;260066;260067;260068;260069;260070;260071 260067 7 VVNVGDVVEVMVLDIDEER Unmodified 2128.0722 0.07218525 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 1 1 2 2 3 3 1 2 2 2 2 4 2 2 2 2 3 4 2 1 2 56.111 54.842 2;3 2.6605E-67 27143 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 297.97 296.78 2560500000 158150000 144630000 140140000 15260000 22635000 42572000 56586000 43142000 53941000 9164300 15680000 21539000 111270000 291680000 104860000 263720000 340940000 299910000 118690000 119990000 135810000 18216000 11869000 20125000 22752 990 22038 423459;423460;423461;423462;423463;423464;423465;423466;423467;423468;423469;423470;423471;423472;423473;423474;423475;423476;423477;423478;423479;423480;423481;423482;423483;423484;423485;423486;423487;423488;423489;423490;423491;423492;423493;423494;423495;423496;423497;423498;423499;423500;423501;423502;423503;423504;423505;423506;423507;423508;423509;423510;423511;423512 260072;260073;260074;260075;260076;260077;260078;260079;260080;260081;260082;260083;260084;260085;260086;260087;260088;260089;260090;260091;260092;260093;260094;260095;260096;260097;260098;260099;260100;260101;260102;260103 260092 29 VVNVGDVVEVMVLDIDEERR Unmodified 2284.1733 0.17329628 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.049 53.6 3 2.1039E-07 25427 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 106.75 102.22 477320000 52646000 56625000 51037000 2233400 0 1700800 23804000 18632000 21341000 0 0 2076900 45185000 35686000 30103000 0 0 0 48154000 42544000 41793000 0 0 3763200 22753 990 22039 423513;423514;423515;423516;423517;423518;423519;423520;423521;423522;423523;423524;423525;423526;423527;423528 260104;260105 260105 2 VVNVGDVVEVMVLDIDEERRR Unmodified 2440.2744 0.27440731 990 P0AG67 rpsA 30S ribosomal protein S1 yes yes 0 0 2 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 53.539 52.759 4 1.4422E-10 19354 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 126.22 123.02 64966000 0 0 0 13296000 13107000 14070000 0 0 0 0 0 0 0 0 0 10319000 14175000 0 0 0 0 0 0 0 22754 990 22040 423529;423530;423531;423532;423533 260106 260106 1 VVPAEFK Unmodified 788.44324 0.44324019 637 P0AB83 nth Endonuclease III yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 17.628 18.062 2 0.013921 5178 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 83.287 73.102 110240000 0 3470200 0 0 0 0 2497300 0 0 0 0 0 0 4405300 0 36830000 26762000 23310000 0 6871400 6092400 0 0 0 22755 637 22041 423534;423535;423536;423537;423538;423539;423540;423541 260107;260108;260109 260107 3 VVPEAMEKPR Unmodified 1154.6118 0.61177885 1799 P75960 cobB NAD-dependent protein deacylase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.685 13.444 3 0.0011895 3775 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 78.655 68.651 85999000 10603000 11906000 12122000 0 0 0 0 6300200 6716900 0 0 0 0 7516300 6855500 0 0 408410 8217100 9064000 6288800 0 0 0 22756 1799 22042 423542;423543;423544;423545;423546;423547;423548;423549;423550;423551;423552 260110 260110 1 VVPLFPIYDGK Unmodified 1246.6962 0.69616041 1243 P24205 lpxM Lipid A biosynthesis myristoyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.445 46.999 2 0.00020742 22653 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 103.55 102.75 135660000 5132500 3030300 4320000 3103600 3074200 2542600 12266000 9381500 8927900 6861800 4126800 5641300 4330200 4743100 6078800 0 0 0 12970000 10924000 12987000 5453000 3969700 5799300 22757 1243 22043 423553;423554;423555;423556;423557;423558;423559;423560;423561;423562;423563;423564;423565;423566;423567;423568;423569;423570;423571;423572;423573 260111;260112;260113;260114;260115;260116;260117;260118;260119;260120;260121;260122;260123;260124;260125 260119 15 VVPPAAVR Unmodified 807.49667 0.49667274 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.436 15.214 2 0.0097993 5019 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 79.454 79.454 2071000000 245260000 240450000 202990000 1183000 1110000 1050700 151260000 178270000 169400000 0 0 0 146550000 120020000 116400000 0 0 0 180240000 153330000 162700000 0 0 791880 22758 512 22044 423574;423575;423576;423577;423578;423579;423580;423581;423582;423583;423584;423585;423586;423587;423588;423589 260126;260127;260128;260129;260130;260131;260132;260133;260134;260135;260136;260137 260132 12 VVPPEAMENAPASLHSLDVK Unmodified 2103.067 0.067040293 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.076 33.57 3 0.002245 16116 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 47.688 39.4 726030000 69643000 63035000 50434000 1286300 0 1340100 75018000 71542000 61667000 0 0 0 45488000 50437000 43868000 0 0 0 63322000 66295000 61127000 0 0 1521600 22759 1609 22045 423590;423591;423592;423593;423594;423595;423596;423597;423598;423599;423600;423601;423602;423603;423604 260138;260139;260140;260141;260142;260143;260144;260145;260146;260147 260140 10 VVQEDRFTTIHIQELACVSR Unmodified 2400.222 0.22197781 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 9 7 9 15 17 15 8 8 7 37.337 36.173 2;3;4 1.9361E-29 10989 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 240.79 213.82 7043000000 0 0 0 7340400 8915600 8484600 6497900 0 0 162780000 317980000 361060000 0 0 0 1262300000 1471600000 1332300000 0 0 0 723190000 711150000 669360000 22760 463 22046 423605;423606;423607;423608;423609;423610;423611;423612;423613;423614;423615;423616;423617;423618;423619;423620;423621;423622;423623;423624;423625;423626;423627;423628;423629;423630;423631;423632;423633;423634;423635;423636;423637;423638;423639;423640;423641;423642;423643;423644;423645;423646;423647;423648;423649;423650;423651;423652;423653;423654;423655;423656;423657;423658;423659;423660;423661;423662;423663;423664;423665;423666;423667;423668;423669;423670;423671;423672;423673;423674;423675;423676;423677;423678;423679;423680;423681;423682;423683;423684;423685;423686;423687;423688;423689;423690;423691;423692;423693;423694;423695;423696;423697;423698;423699;423700;423701;423702;423703;423704;423705;423706 260148;260149;260150;260151;260152;260153;260154;260155;260156;260157;260158;260159;260160;260161;260162;260163;260164;260165;260166;260167;260168;260169;260170;260171;260172;260173;260174;260175;260176;260177;260178;260179;260180;260181;260182;260183;260184;260185;260186;260187;260188;260189;260190;260191;260192;260193;260194;260195;260196;260197;260198;260199;260200;260201;260202;260203;260204;260205;260206;260207;260208;260209;260210;260211;260212;260213;260214;260215;260216;260217;260218;260219;260220 260165 68 VVQTEER Unmodified 859.43995 0.43994572 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 5.183 6.0616 2 0.028152 1344 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 68.915 38.495 171220000 0 0 0 0 0 1373500 54132000 47763000 41996000 0 0 0 6706200 0 0 0 0 0 6184000 6197600 6871000 0 0 0 22761 169 22047 423707;423708;423709;423710;423711;423712;423713;423714 260221;260222;260223 260222 3 VVSDKMEK Unmodified 934.47937 0.4793677 989 P0AG63 rpsQ 30S ribosomal protein S17 yes yes 0 0 1 By MS/MS By matching By matching By MS/MS 1 1 1 1 5.532 6.6193 2 0.078961 1143 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 60.682 44.538 6229800 0 0 0 1996600 2627900 1605300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22762 989 22048 423715;423716;423717;423718 260224;260225 260225 2 VVSDYLAK Unmodified 893.48583 0.48583328 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.188 19.707 2 0.010005 7400 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.116 66.563 1794100000 465520000 400560000 398050000 0 1107100 1160100 107490000 112920000 101380000 0 1014500 0 22508000 20701000 16703000 0 0 0 46633000 49008000 49365000 0 0 0 22763 1254 22049 423719;423720;423721;423722;423723;423724;423725;423726;423727;423728;423729;423730;423731;423732;423733 260226;260227;260228;260229;260230;260231;260232 260231 6 VVSEITESNGSSSMASVCGASLALMDAGVPIK Unmodified 3166.5196 0.51960089 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.994 51.595 3 4.6255E-09 18731 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 89.149 87.038 132130000 6809300 6281700 5546900 5686700 4872000 6018400 10527000 9015800 0 0 3134700 3133900 14040000 12118000 3212900 0 0 0 15419000 13138000 13173000 0 0 0 22764 107 22050 423734;423735;423736;423737;423738;423739;423740;423741;423742;423743;423744;423745;423746;423747;423748;423749 260233;260234;260235;260236 260235 4 VVSGGTDNHLFLVDLVDK Unmodified 1927.0051 0.005091963 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 3 1 1 1 2 2 2 1 1 2 2 3 2 2 2 1 1 1 45.798 44.268 2;3 9.1141E-38 21419 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 249.73 227.68 20945000000 3320400000 3193900000 3327300000 4021400 3578700 4214400 1278800000 1215700000 1163400000 0 1457900 2137300 1230700000 1087400000 1078800000 0 0 0 1391900000 1382200000 1255100000 1342000 1263600 1973200 22765 391 22051 423750;423751;423752;423753;423754;423755;423756;423757;423758;423759;423760;423761;423762;423763;423764;423765;423766;423767;423768;423769;423770;423771;423772;423773;423774;423775;423776;423777;423778;423779;423780;423781;423782;423783;423784 260237;260238;260239;260240;260241;260242;260243;260244;260245;260246;260247;260248;260249;260250;260251;260252;260253;260254;260255;260256;260257;260258;260259;260260;260261;260262;260263;260264;260265;260266;260267 260251 31 VVSGGTDNHLFLVDLVDKNLTGK Unmodified 2440.2962 0.29618861 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 46.799 46.134 4 0.035428 16671 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 39.188 27.728 25480000 0 0 0 4007400 5454300 5937500 0 0 0 0 0 0 0 0 0 3374700 1717500 4988200 0 0 0 0 0 0 22766 391 22052 423785;423786;423787;423788;423789;423790 260268;260269 260268 2 VVSLIVPR Unmodified 881.56984 0.56983769 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.638 29.244 2 0.00030221 14016 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 146.94 108.13 2771300000 213520000 187360000 225750000 2366100 2134300 2431200 230330000 190810000 211450000 13883000 14590000 17951000 250920000 252250000 245970000 4955600 3008100 4962300 226840000 248870000 198220000 7520400 7827900 7395900 22767 882 22053 423791;423792;423793;423794;423795;423796;423797;423798;423799;423800;423801;423802;423803;423804;423805;423806;423807;423808;423809;423810;423811;423812;423813;423814 260270;260271;260272;260273;260274;260275;260276;260277;260278;260279;260280;260281;260282;260283;260284;260285 260273 14 VVSLPSTDIFDAQDEEYR Unmodified 2082.9746 0.9745797 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 47.495 46.1 2;3 2.392E-45 22352 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 264.72 260.38 837300000 166310000 147750000 150500000 0 0 0 83880000 76935000 85165000 0 0 0 17385000 17888000 16849000 0 0 0 21771000 26379000 26480000 0 0 0 22768 1423 22054 423815;423816;423817;423818;423819;423820;423821;423822;423823;423824;423825;423826;423827;423828;423829;423830;423831;423832;423833;423834;423835;423836;423837 260286;260287;260288;260289;260290;260291;260292;260293;260294;260295;260296;260297;260298;260299;260300 260297 15 VVSLPSTDIFDAQDEEYRESVLPSNVAAR Unmodified 3206.5732 0.57315133 1423 P33570 tktB Transketolase 2 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 2 2 2 1 1 1 1 1 1 48.808 47.437 3;4 1.2259E-23 23245 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 177.6 175.52 1208800000 230810000 243960000 165980000 0 2207800 3298800 132210000 124220000 129890000 0 0 0 27669000 19348000 22210000 0 0 0 35376000 38492000 33136000 0 0 0 22769 1423 22055 423838;423839;423840;423841;423842;423843;423844;423845;423846;423847;423848;423849;423850;423851;423852;423853;423854;423855;423856 260301;260302;260303;260304;260305;260306;260307;260308;260309;260310;260311;260312 260307 12 VVSMPSTDAFDK Oxidation (M) 1311.6017 0.60166768 1299 P27302 tktA Transketolase 1 yes yes 0 1 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 1 2 1 2 2 1 20.293 20.684 2 0.00077195 9043 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 67.207 67.207 59258000 0 3095200 3804500 0 0 0 6816500 0 5857800 0 0 0 4407000 8133500 2637000 0 0 0 8819000 9778400 5909200 0 0 0 22770 1299 22056 423857;423858;423859;423860;423861;423862;423863;423864;423865;423866;423867;423868;423869;423870 260313;260314;260315;260316 260314 532 2 VVSMPSTDAFDK Unmodified 1295.6068 0.60675306 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.956 28.599 2 2.5639E-05 13355 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.4 115.15 9413300000 496080000 549590000 450350000 0 0 0 961650000 865620000 889210000 0 0 0 795920000 949690000 793530000 0 0 0 863820000 937700000 860110000 0 0 0 22771 1299 22056 423871;423872;423873;423874;423875;423876;423877;423878;423879;423880;423881;423882 260317;260318;260319;260320;260321;260322;260323;260324 260320 8 VVSMPSTDAFDKQDAAYR Unmodified 1999.9309 0.93094074 1299 P27302 tktA Transketolase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 3 2 2 1 29.294 28.049 2;3 6.5978E-29 13168 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 255.54 250.15 4331300000 233520000 207670000 211590000 2856800 2928300 3007100 483990000 446230000 409610000 0 2426500 0 345630000 334420000 302120000 0 1117000 1286900 424340000 444800000 472200000 0 1553800 0 22772 1299 22057 423883;423884;423885;423886;423887;423888;423889;423890;423891;423892;423893;423894;423895;423896;423897;423898;423899;423900;423901;423902;423903;423904;423905;423906;423907;423908;423909;423910;423911;423912;423913;423914 260325;260326;260327;260328;260329;260330;260331;260332;260333;260334;260335;260336;260337;260338;260339;260340;260341;260342;260343;260344;260345;260346;260347;260348 260330 24 VVSMVEFEK Unmodified 1066.5369 0.53688258 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.656 28.344 2 0.00021821 13111 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.98 110.83 1220400000 33956000 30411000 28631000 23689000 19528000 18815000 98252000 114170000 94178000 39689000 36286000 43950000 79701000 76248000 71019000 8912300 5213000 6079100 89431000 113910000 102950000 29229000 29029000 27131000 22773 595 22058 423915;423916;423917;423918;423919;423920;423921;423922;423923;423924;423925;423926;423927;423928;423929;423930;423931;423932;423933;423934;423935;423936;423937;423938 260349;260350;260351;260352;260353;260354;260355;260356;260357;260358;260359;260360;260361;260362;260363;260364;260365 260356 17 VVSTGGELNK Unmodified 1002.5346 0.53457439 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.981 12.865 2 0.022678 2655 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 61.691 43.289 101470000 10151000 7710900 7164800 11502000 11567000 10393000 0 0 5779100 0 0 0 8643000 0 0 0 0 0 10068000 9344700 9146400 0 0 0 22774 1933 22059 423939;423940;423941;423942;423943;423944;423945;423946;423947;423948;423949 260366;260367 260367 1 VVSTGGELNKNTLSLQGR Unmodified 1872.0065 0.0064889465 1933 P77721 ydjF Uncharacterized HTH-type transcriptional regulator YdjF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 22.684 22.101 3 3.3407E-07 6915 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 107.34 104.29 18756000 0 0 0 8205800 5327400 5222900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22775 1933 22060 423950;423951;423952 260368;260369;260370 260369 3 VVTFRPGQK Unmodified 1030.5924 0.59236404 290 P0A6X7 ihfA Integration host factor subunit alpha yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.789 13.392 2 5.9412E-05 3223 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 153.04 93.831 609740000 34657000 37269000 37149000 2082100 2446400 2249400 31151000 32568000 36362000 44749000 38053000 30107000 26480000 30826000 29762000 56053000 21818000 26958000 25056000 15198000 20289000 9369200 9409400 9675100 22776 290 22061 423953;423954;423955;423956;423957;423958;423959;423960;423961;423962;423963;423964;423965;423966;423967;423968;423969;423970;423971;423972;423973;423974;423975;423976 260371;260372;260373;260374;260375;260376;260377 260371 7 VVTHEAVGK Unmodified 938.51853 0.5185304 1676 P64483 yeaK Uncharacterized protein YeaK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 10.268 11.104 2 0.00028218 2458 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 119.41 101.56 269700000 46120000 38094000 36522000 0 0 0 0 0 0 0 0 0 20460000 24747000 16670000 0 0 0 31281000 28405000 27403000 0 0 0 22777 1676 22062 423977;423978;423979;423980;423981;423982;423983;423984;423985 260378;260379;260380;260381;260382;260383 260381 4 VVTLEDSR Unmodified 917.48181 0.48181054 804 P0ADS9 yggN Uncharacterized protein YggN yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.025 15.738 2 0.0025212 5336 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 99.799 80.163 438700000 38746000 38155000 0 1623800 1565800 1260300 39916000 47803000 42730000 0 2097700 2054900 36750000 34255000 33309000 0 0 0 37276000 38824000 40199000 2136100 0 0 22778 804 22063 423986;423987;423988;423989;423990;423991;423992;423993;423994;423995;423996;423997;423998;423999;424000;424001;424002 260384;260385;260386;260387;260388;260389;260390 260386 4 VVTLSGFVESQAQAEEAVK Unmodified 1991.0211 0.021135958 943 P0AFH8 osmY Osmotically-inducible protein Y yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 13 12 11 1 4 6 4 4 3 4 4 7 5 46.405 44.956 2;3 1.0714E-46 20731 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 270.8 257.4 3357100000 899750000 751070000 644930000 2976800 0 0 140200000 175730000 156290000 0 0 0 55615000 56364000 62157000 0 0 0 136820000 150630000 124600000 0 0 0 22779 943 22064 424003;424004;424005;424006;424007;424008;424009;424010;424011;424012;424013;424014;424015;424016;424017;424018;424019;424020;424021;424022;424023;424024;424025;424026;424027;424028;424029;424030;424031;424032;424033;424034;424035;424036;424037;424038;424039;424040;424041;424042;424043;424044;424045;424046;424047;424048;424049;424050;424051;424052;424053;424054;424055;424056;424057;424058;424059;424060;424061;424062;424063;424064;424065;424066;424067;424068;424069;424070;424071;424072;424073;424074;424075;424076;424077;424078;424079;424080 260391;260392;260393;260394;260395;260396;260397;260398;260399;260400;260401;260402;260403;260404;260405;260406;260407;260408;260409;260410;260411;260412;260413;260414;260415;260416;260417;260418;260419;260420;260421;260422;260423;260424;260425;260426;260427;260428;260429;260430;260431;260432;260433;260434;260435;260436;260437;260438;260439;260440;260441;260442;260443;260444;260445;260446;260447;260448;260449;260450;260451;260452;260453;260454;260455;260456;260457;260458;260459;260460;260461;260462;260463;260464;260465;260466;260467;260468;260469;260470;260471;260472;260473;260474;260475;260476;260477;260478;260479;260480;260481 260397 85 VVTNALLTR Unmodified 985.59203 0.59202969 1171 P21169 speC Ornithine decarboxylase, constitutive yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 23.264 22.535 2 0.0038372 9194 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 80.165 64.795 172710000 10913000 12319000 10541000 0 0 0 12126000 12903000 9312900 0 0 0 13984000 13251000 14381000 0 0 0 17875000 22435000 22672000 0 0 0 22780 1171 22065 424081;424082;424083;424084;424085;424086;424087;424088;424089;424090;424091;424092 260482;260483;260484;260485 260485 4 VVVETPVGLNER Unmodified 1310.7194 0.71941505 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.91 27.615 2 3.7373E-17 10269 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 218.47 168.43 672670000 63849000 53100000 47968000 8830000 0 0 28655000 32538000 26520000 47056000 38243000 39577000 23015000 21779000 25120000 7924300 4886800 5610300 43400000 51170000 47074000 19903000 18064000 18392000 22781 190 22066 424093;424094;424095;424096;424097;424098;424099;424100;424101;424102;424103;424104;424105;424106;424107;424108;424109;424110;424111;424112;424113;424114 260486;260487;260488;260489;260490;260491;260492;260493;260494;260495;260496;260497;260498;260499 260488 14 VVVGLLLGEVIR Unmodified 1265.8071 0.80710784 396 P0A850 tig Trigger factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 1 2 2 3 3 2 3 1 3 2 3 2 2 2 3 3 4 1 2 1 53.745 52.47 2;3 3.2174E-09 26039 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 211.52 211.52 9366200000 596850000 590070000 602720000 20173000 17671000 21804000 694400000 718490000 721910000 52632000 21130000 18065000 694980000 715640000 641240000 25124000 15394000 20412000 1149500000 980610000 989780000 19042000 17160000 21392000 22782 396 22067 424115;424116;424117;424118;424119;424120;424121;424122;424123;424124;424125;424126;424127;424128;424129;424130;424131;424132;424133;424134;424135;424136;424137;424138;424139;424140;424141;424142;424143;424144;424145;424146;424147;424148;424149;424150;424151;424152;424153;424154;424155;424156;424157;424158;424159;424160;424161;424162;424163;424164;424165;424166;424167;424168;424169 260500;260501;260502;260503;260504;260505;260506;260507;260508;260509;260510;260511;260512;260513;260514;260515;260516;260517;260518;260519;260520;260521;260522;260523;260524;260525;260526;260527;260528;260529;260530;260531;260532;260533;260534;260535;260536;260537;260538;260539;260540;260541;260542;260543;260544;260545;260546;260547;260548;260549;260550;260551;260552 260507 51 VVVGQEPACVK Unmodified 1184.6223 0.62234354 599 P0AAJ5 fdoH Formate dehydrogenase-O iron-sulfur subunit yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.433 16.985 2 0.00016399 5967 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 109.11 100.16 122020000 6609300 7276900 8001500 5224400 4562100 5701400 7497700 6454900 9261200 2863200 2358300 4628400 4114400 5244000 5053800 1400200 821720 794880 9827500 7139100 9066700 2224100 2692100 3201300 22783 599 22068 424170;424171;424172;424173;424174;424175;424176;424177;424178;424179;424180;424181;424182;424183;424184;424185;424186;424187;424188;424189;424190;424191;424192;424193 260553;260554;260555;260556;260557;260558;260559;260560;260561;260562 260555 10 VVVLGGGDTAMDCVR Unmodified 1547.7436 0.74359766 219 P09832 gltD Glutamate synthase [NADPH] small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.291 30.952 2 5.4001E-20 14421 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 205.13 202.98 1274300000 260710000 260470000 233940000 0 0 0 63674000 70997000 71676000 0 0 0 56516000 46242000 42809000 0 0 0 55251000 56949000 55012000 0 0 0 22784 219 22069 424194;424195;424196;424197;424198;424199;424200;424201;424202;424203;424204;424205 260563;260564;260565;260566;260567;260568;260569;260570;260571;260572;260573;260574 260571 12 VVVLLSHPANPR Unmodified 1300.7616 0.76155464 1248 P24252 ybgA Uncharacterized protein YbgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 1 1 2 1 1 1 2 1 2 20.048 20.483 2;3 3.0251E-06 7861 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.06 123.2 205840000 32298000 35885000 30068000 1156100 1113400 1355300 11397000 11444000 21221000 0 0 0 8540500 8186900 6374200 0 0 0 14864000 8500300 13432000 0 0 0 22785 1248 22070 424206;424207;424208;424209;424210;424211;424212;424213;424214;424215;424216;424217;424218;424219;424220;424221;424222;424223;424224;424225;424226 260575;260576;260577;260578 260578 4 VVVLSNTNR Unmodified 1000.5665 0.56654322 472 P0A8Y3 yihX Alpha-D-glucose-1-phosphate phosphatase YihX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.908 15.738 2 6.6849E-08 5334 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 190.08 170.6 634800000 63233000 90298000 68099000 1122800 1042100 1307700 47653000 60159000 49995000 0 0 0 46893000 48839000 39402000 0 0 0 43344000 32946000 40466000 0 0 0 22786 472 22071 424227;424228;424229;424230;424231;424232;424233;424234;424235;424236;424237;424238;424239;424240;424241 260579;260580;260581;260582;260583;260584;260585;260586 260583 8 VVVMGMGK Unmodified 819.43467 0.43466611 1565 P45395 kdsD Arabinose 5-phosphate isomerase KdsD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 21.078 21.345 2 0.026201 8886 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.803 31.874 77420000 0 0 0 0 0 0 31418000 0 0 0 0 0 0 816430 0 0 0 0 45186000 0 0 0 0 0 22787 1565 22072 424242;424243;424244;424245;424246;424247;424248 260587;260588;260589;260590;260591;260592 260587 5 VVVPAAIAPEINDK Unmodified 1434.8082 0.80823006 253 P0A6J8 ddlA D-alanine--D-alanine ligase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.184 35.329 2 2.3833E-06 16894 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 144.55 140.66 1478000000 107350000 110570000 106470000 0 0 0 138410000 138890000 125330000 480970 548860 499370 115390000 115480000 110340000 0 0 0 131960000 130420000 145890000 0 0 0 22788 253 22073 424249;424250;424251;424252;424253;424254;424255;424256;424257;424258;424259;424260;424261;424262;424263 260593;260594;260595;260596;260597;260598;260599;260600;260601;260602;260603;260604 260601 12 VVVPAQGK Unmodified 796.48069 0.48068833 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.328 12.965 2 0.0025068 3649 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 99.919 82.993 21227000000 2622000000 2705300000 2843100000 8475000 0 8622400 1194300000 1245500000 1032700000 1734000 1831700 1530000 1375600000 1145900000 1173800000 1399400 1234100 1380400 2029500000 1818400000 2014900000 0 0 0 22789 179 22074 424264;424265;424266;424267;424268;424269;424270;424271;424272;424273;424274;424275;424276;424277;424278;424279;424280;424281;424282;424283 260605;260606;260607;260608;260609;260610;260611;260612;260613;260614;260615;260616 260605 12 VVVSGIGK Unmodified 757.46979 0.46978929 1135 P17115 gutQ Arabinose 5-phosphate isomerase GutQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 2 2 2 2 2 2 15.354 16.186 1;2 0.0080643 5237 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 82.305 52.463 379430000 28282000 21698000 20251000 213110 262570 280490 36215000 40070000 31121000 0 0 0 38219000 28225000 25085000 0 0 0 36949000 33847000 38714000 0 0 0 22790 1135 22075 424284;424285;424286;424287;424288;424289;424290;424291;424292;424293;424294;424295;424296;424297;424298;424299;424300;424301;424302;424303;424304;424305;424306;424307;424308;424309 260617;260618;260619;260620;260621;260622;260623;260624;260625;260626;260627;260628;260629 260627 7 VVVSLGPQGALGVDSENCIQVVPPPVK Unmodified 2757.4735 0.47350104 145 P06999 pfkB ATP-dependent 6-phosphofructokinase isozyme 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 50.31 48.904 2 1.7052E-10 24251 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 148.15 141.4 75805000 5969300 4115400 4422700 0 0 0 10497000 10556000 8413700 0 0 0 4475200 3951100 4471100 0 0 0 8074700 6567500 4290700 0 0 0 22791 145 22076 424310;424311;424312;424313;424314;424315;424316;424317;424318;424319;424320;424321 260630;260631 260630 2 VVVTGLGMLSPVGNTVESTWK Unmodified 2173.1453 0.14529061 596 P0AAI5 fabF 3-oxoacyl-[acyl-carrier-protein] synthase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 52.528 51.281 2;3 6.2671E-29 25283 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 254.58 253.5 5048600000 239770000 241310000 228620000 1984700 2009100 2657900 447680000 413560000 411960000 0 0 0 519080000 488810000 493350000 0 0 0 520580000 532690000 504570000 0 0 0 22792 596 22077 424322;424323;424324;424325;424326;424327;424328;424329;424330;424331;424332;424333;424334;424335;424336;424337;424338;424339;424340;424341;424342;424343;424344;424345;424346;424347;424348;424349 260632;260633;260634;260635;260636;260637;260638;260639;260640;260641;260642;260643;260644;260645;260646;260647;260648;260649;260650;260651;260652;260653;260654 260637 23 VVVTRPGGEQGK Unmodified 1225.6779 0.67788459 811 P0ADV1 lptA Lipopolysaccharide export system protein LptA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 2 11.032 11.88 2;3 9.2971E-07 3031 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 169.65 112.61 1145000000 61249000 70503000 98132000 0 0 0 26408000 31574000 0 0 0 0 105590000 97996000 99317000 0 0 0 280650000 129190000 144380000 0 0 0 22793 811 22078 424350;424351;424352;424353;424354;424355;424356;424357;424358;424359;424360;424361;424362;424363;424364;424365;424366;424367;424368;424369;424370 260655;260656;260657;260658;260659;260660;260661;260662;260663;260664;260665;260666;260667;260668;260669;260670;260671;260672;260673;260674;260675 260666 21 VVVYDMPGTTR Unmodified 1236.6173 0.61725816 268 P0A6P5 der GTPase Der yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 27.42 26.255 2 2.7515E-07 11974 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.59 156.57 170790000 39938000 33317000 28878000 0 0 0 5832300 6712800 10145000 0 0 0 0 7799700 6138800 0 0 0 9066700 10586000 12379000 0 0 0 22794 268 22079 424371;424372;424373;424374;424375;424376;424377;424378;424379;424380;424381 260676;260677;260678 260676 3 VVWHNRPFEAIIQEVISGGHDLVLK Unmodified 2855.5446 0.54463257 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 1 2 3 3 3 1 2 3 3 3 3 1 2 3 3 1 1 53.64 52.248 3;4;5 7.8973E-06 25391 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 88.504 82.209 3071600000 234750000 198060000 253660000 7065700 5830700 9681200 481340000 419770000 417750000 11139000 25364000 24429000 205970000 167730000 190710000 0 0 11415000 120370000 141940000 139350000 0 2469400 2771100 22795 585 22080 424382;424383;424384;424385;424386;424387;424388;424389;424390;424391;424392;424393;424394;424395;424396;424397;424398;424399;424400;424401;424402;424403;424404;424405;424406;424407;424408;424409;424410;424411;424412;424413;424414;424415;424416;424417;424418;424419;424420;424421;424422;424423;424424;424425;424426;424427;424428;424429;424430 260679;260680;260681;260682;260683;260684;260685;260686;260687;260688;260689;260690;260691;260692;260693;260694;260695;260696;260697;260698;260699;260700;260701;260702;260703;260704;260705;260706;260707;260708;260709;260710 260694 30 VVWPDLDDAQR Unmodified 1312.6412 0.64116473 1456 P37095 pepB Peptidase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 38.283 36.609 2 1.0421E-07 17006 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 209.87 208.68 1159600000 85907000 81368000 87914000 0 0 0 95686000 104220000 99694000 0 0 0 105400000 105780000 97200000 0 0 0 97019000 99925000 99438000 0 0 0 22796 1456 22081 424431;424432;424433;424434;424435;424436;424437;424438;424439;424440;424441;424442 260711;260712;260713;260714;260715;260716;260717 260716 7 VVWRPGKPAAEGVNVK Unmodified 1705.9628 0.96277364 1519 P39286 rsgA Putative ribosome biogenesis GTPase RsgA yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 17.213 17.889 3 0.016229 6117 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 43.297 40.681 107250000 11756000 16614000 14577000 0 0 0 7478200 5936100 6589100 0 0 0 0 6878400 7794800 0 0 0 11509000 8101300 10016000 0 0 0 22797 1519 22082 424443;424444;424445;424446;424447;424448;424449;424450;424451;424452;424453 260718;260719;260720 260719 3 VVWVDDR Unmodified 887.45012 0.45011648 26 P00370 gdhA NADP-specific glutamate dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 23.157 22.456 2 0.0028071 9552 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.61 104.22 774910000 203580000 172110000 183860000 0 0 0 25986000 28263000 24670000 0 0 0 16745000 17454000 19363000 0 0 0 25321000 27885000 29675000 0 0 0 22798 26 22083 424454;424455;424456;424457;424458;424459;424460;424461;424462;424463;424464;424465;424466 260721;260722;260723;260724;260725;260726;260727 260724 7 VVYAGNALR Unmodified 961.53451 0.53451481 777 P0ADA3 nlpD Murein hydrolase activator NlpD yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.12 18.544 2 1.611E-05 6905 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 158.38 121.36 589320000 51658000 48807000 44540000 2009600 1945300 2139500 50089000 48987000 49336000 5929600 2062500 3991100 39788000 32144000 31080000 0 0 0 59187000 57710000 52491000 2214700 1852700 1359500 22799 777 22084 424467;424468;424469;424470;424471;424472;424473;424474;424475;424476;424477;424478;424479;424480;424481;424482;424483;424484;424485;424486;424487 260728;260729;260730;260731;260732;260733;260734;260735;260736;260737;260738;260739 260732 12 VVYAQSALGAYSSVHNIIADK Unmodified 2205.143 0.14298243 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 1 2 1 1 1 1 40.392 38.587 2;3 3.8045E-16 19217 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 155.49 152.52 1996100000 313360000 333580000 291310000 920260 1348600 897280 225130000 227410000 252570000 3684800 3345800 3129300 52285000 67960000 52027000 0 0 0 56719000 53679000 56724000 0 0 0 22800 1316 22085 424488;424489;424490;424491;424492;424493;424494;424495;424496;424497;424498;424499;424500;424501;424502;424503;424504;424505;424506;424507;424508;424509;424510;424511;424512 260740;260741;260742;260743;260744;260745;260746;260747;260748;260749;260750;260751 260740 12 VVYDFVNVIQGDATLNQALIK Unmodified 2319.2474 0.2474475 899 P0AEZ3 minD Septum site-determining protein MinD yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.594 53.159 3 7.7279E-28 26267 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 139.9 138.94 622790000 0 64401000 50258000 3654300 5565600 5016500 35487000 36201000 40608000 19080000 13770000 15110000 58275000 49970000 45262000 0 0 0 63964000 55845000 56600000 0 0 3722600 22801 899 22086 424513;424514;424515;424516;424517;424518;424519;424520;424521;424522;424523;424524;424525;424526;424527;424528;424529;424530 260752;260753;260754;260755;260756;260757;260758;260759;260760;260761;260762;260763;260764;260765 260755 14 VVYDISGKPPATIEWE Unmodified 1802.9091 0.90906631 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 2 2 1 44.004 42.454 2;3 5.396E-06 19725 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 124.38 121.04 2891400000 196250000 201890000 169100000 0 0 0 229360000 210780000 209350000 0 0 0 309920000 293830000 324960000 0 0 0 248310000 269890000 227760000 0 0 0 22802 86 22087 424531;424532;424533;424534;424535;424536;424537;424538;424539;424540;424541;424542;424543;424544;424545;424546;424547;424548;424549;424550 260766;260767;260768;260769;260770;260771;260772;260773;260774;260775;260776;260777;260778;260779;260780;260781;260782;260783;260784 260783 19 VVYDSVGR Unmodified 893.46068 0.46068117 1316 P28304 qorA Quinone oxidoreductase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 1 2 1 1 1 1 1 1 1 1 1 1 1 14.786 15.539 2 0.00025974 5257 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 149.4 116.93 761770000 96620000 110220000 114170000 0 416790 0 108880000 107960000 92806000 0 0 1112800 22406000 20591000 17231000 0 0 0 22432000 24751000 22174000 0 0 0 22803 1316 22088 424551;424552;424553;424554;424555;424556;424557;424558;424559;424560;424561;424562;424563;424564;424565;424566 260785;260786;260787;260788;260789;260790;260791 260785 7 VVYGATFR Unmodified 911.4865 0.48650199 1534 P39384 yjiM Uncharacterized protein YjiM yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.437 21.416 2 0.0087861 8858 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 81.119 60.134 142140000 0 0 0 0 0 0 30132000 24313000 18526000 2284300 2068000 2786400 13684000 12049000 13603000 0 0 0 4886400 8721300 7661100 812900 610850 0 22804 1534 22089 424567;424568;424569;424570;424571;424572;424573;424574;424575;424576;424577;424578;424579;424580 260792;260793 260793 2 VVYHTPCHMEK Unmodified 1399.6377 0.63767603 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 2 1 1 1 1 1 1 1 1 11.594 12.164 2;3 0.00014297 2664 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 81.525 79.026 106350000 0 0 0 0 0 0 15357000 17651000 16800000 9117900 9737700 8290700 6270900 4055600 6835200 0 2261600 2058900 4490000 0 3420100 0 0 0 22805 500 22090 424581;424582;424583;424584;424585;424586;424587;424588;424589;424590;424591;424592;424593;424594 260794;260795;260796;260797;260798 260796 5 VVYRPDINQGNYLTANDVSK Unmodified 2265.139 0.13895968 485 P0A937 bamE Outer membrane protein assembly factor BamE yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.141 28.644 3 1.6455E-10 13340 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 126.69 112.79 281610000 12675000 13611000 9362300 2518300 2074700 2366200 15906000 15782000 17502000 9260700 7909800 8247600 15663000 12334000 12585000 2554100 0 0 32676000 40349000 34183000 5167000 4055300 4825300 22806 485 22091 424595;424596;424597;424598;424599;424600;424601;424602;424603;424604;424605;424606;424607;424608;424609;424610;424611;424612;424613;424614;424615;424616 260799;260800;260801;260802;260803;260804;260805;260806;260807;260808 260805 10 VVYVCSPNNPTGQLINPQDFR Unmodified 2417.1798 0.17977864 138 P06986 hisC Histidinol-phosphate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.581 43.066 3 8.7214E-06 21125 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 57.41 56.755 167500000 20884000 24707000 22545000 0 0 0 10517000 10231000 11056000 0 0 0 9741000 12128000 9807900 0 0 0 12006000 11529000 12353000 0 0 0 22807 138 22092 424617;424618;424619;424620;424621;424622;424623;424624;424625;424626;424627;424628 260809;260810;260811 260809 3 VWADNTDFVK Unmodified 1193.5717 0.57168818 1300 P27303 emrA Multidrug export protein EmrA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 30.237 29.035 2 0.0054142 12977 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 66.299 53.471 24041000 0 5159300 5909000 0 0 1350100 0 0 0 0 0 0 5668700 0 5953700 0 0 0 0 0 0 0 0 0 22808 1300 22093 424629;424630;424631;424632;424633 260812 260812 1 VWDFVMMK Unmodified 1054.498 0.49799465 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.803 45.168 2 0.0034989 22392 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 91.626 76.851 111790000 8572700 7861000 5953900 1510500 1613500 1208100 6407400 10990000 11500000 4281900 4037300 5524100 7185100 0 0 0 0 0 9515400 10597000 9058700 2179000 2019800 1779900 22809 189 22094 424634;424635;424636;424637;424638;424639;424640;424641;424642;424643;424644;424645;424646;424647;424648;424649;424650;424651;424652 260813;260814;260815;260816;260817;260818;260819;260820;260821;260822;260823;260824 260816 12 VWDSVLSEEAVLAFEYGYATAEPR Unmodified 2701.2912 0.29116281 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1 1 2 1 1 2 2 2 2 2 2 1 1 55.617 54.168 2;3 6.9225E-60 26698 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 341.06 323.14 950080000 84494000 68462000 57860000 3579100 3660100 2869800 30860000 50906000 13364000 0 0 0 51537000 70828000 69702000 0 0 0 136790000 130600000 155110000 7165700 4854200 7432200 22810 937 22095 424653;424654;424655;424656;424657;424658;424659;424660;424661;424662;424663;424664;424665;424666;424667;424668;424669;424670;424671;424672;424673;424674;424675;424676;424677;424678 260825;260826;260827;260828;260829;260830;260831;260832;260833;260834;260835;260836;260837 260828 13 VWFGDKSEVNLGAGEAGSVTIPR Unmodified 2388.2074 0.2073736 189 P08506 dacC D-alanyl-D-alanine carboxypeptidase DacC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 41.831 39.679 3 6.4094E-05 15744 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 83.871 82.511 28777000 0 0 0 2035400 3011000 2523000 0 0 0 7434900 8714400 5058200 0 0 0 0 0 0 0 0 0 0 0 0 22811 189 22096 424679;424680;424681;424682;424683;424684 260838;260839;260840;260841;260842;260843 260840 6 VWHAPDNFR Unmodified 1140.5465 0.54647648 1522 P39310 ytfB Uncharacterized protein YtfB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.007 20.273 3 0.014985 6676 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 59.153 54.457 136100000 8596900 8104800 10243000 3056000 2734900 2295000 0 11274000 12827000 8035100 6274100 5555500 8665900 9752800 0 0 0 0 12341000 9760900 9792900 2558000 1841900 2393900 22812 1522 22097 424685;424686;424687;424688;424689;424690;424691;424692;424693;424694;424695;424696;424697;424698;424699;424700;424701;424702;424703 260844;260845;260846;260847;260848;260849 260844 6 VWHILQGDQDLR Unmodified 1478.763 0.7630112 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 31.049 29.821 3 2.0374E-05 13838 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 109.24 107.66 131600000 44380000 33185000 27710000 0 0 0 0 0 0 1718500 0 0 2526400 3548500 3206500 0 0 749130 4657100 4461700 5453100 0 0 0 22813 1181 22098 424704;424705;424706;424707;424708;424709;424710;424711;424712;424713;424714 260850;260851;260852 260852 3 VWIFKGEILGGMAAVEQPEKPAAQPK Unmodified 2793.4888 0.48875718 374 P0A7V3 rpsC 30S ribosomal protein S3 yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 42.761 40.632 4 1.8956E-05 16690 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 84.942 82.938 87219000 0 0 0 8317300 8433400 6132100 0 0 0 16028000 10695000 11755000 0 0 0 0 0 0 0 0 0 8133300 10465000 7258800 22814 374 22099 424715;424716;424717;424718;424719;424720;424721;424722;424723 260853;260854;260855;260856;260857;260858;260859;260860;260861 260853 9 VWIQVVK Unmodified 870.53272 0.5327239 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.645 29.179 2 0.0019075 13046 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 121.68 116.86 283640000 26386000 30393000 24715000 11950000 9755300 11894000 19992000 17989000 16669000 0 0 0 13540000 12571000 11669000 0 0 0 17062000 17096000 17984000 7993500 8439700 7543700 22815 1587 22100 424724;424725;424726;424727;424728;424729;424730;424731;424732;424733;424734;424735;424736;424737;424738;424739;424740;424741 260862;260863;260864;260865;260866;260867;260868;260869;260870;260871;260872;260873 260872 12 VWLANPER Unmodified 983.51886 0.51886475 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 24.524 23.566 2 0.0021719 10348 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 102.72 91.351 526620000 111870000 109590000 104640000 0 0 660470 42337000 43144000 34917000 0 0 0 12755000 12712000 10086000 0 0 0 16849000 16151000 10912000 0 0 0 22816 1958 22101 424742;424743;424744;424745;424746;424747;424748;424749;424750;424751;424752;424753;424754 260874;260875;260876;260877;260878;260879;260880;260881;260882;260883 260878 7 VWLEAGGK Unmodified 858.45995 0.45995289 1225 P23883 puuC Aldehyde dehydrogenase PuuC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 21.643 21.804 2 0.0034654 8879 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 91.906 84.781 45085000 15397000 13386000 14548000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1753400 0 0 0 22817 1225 22102 424755;424756;424757;424758 260884;260885;260886 260884 3 VWNITEGSDDER Unmodified 1419.6266 0.62663688 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.293 26.146 2 1.4819E-30 11310 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 250.96 248.56 866550000 55762000 54207000 48182000 0 0 0 92599000 83625000 85569000 0 0 0 83753000 84836000 76823000 0 0 0 71717000 69060000 60416000 0 0 0 22818 1959 22103 424759;424760;424761;424762;424763;424764;424765;424766;424767;424768;424769;424770 260887;260888;260889;260890;260891;260892;260893;260894;260895;260896;260897;260898 260898 12 VWNITEGSDDERIDAAIAATR Unmodified 2302.119 0.11895252 1959 Q46856 yqhD Alcohol dehydrogenase YqhD yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.181 39.516 3 1.1871E-21 18579 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 162.49 158.22 238970000 13583000 12890000 7980400 0 0 0 30870000 25274000 26152000 0 0 0 20767000 20567000 18078000 0 0 0 20467000 23068000 19277000 0 0 0 22819 1959 22104 424771;424772;424773;424774;424775;424776;424777;424778;424779;424780;424781;424782 260899;260900;260901;260902;260903;260904 260902 6 VWPSILQQIAIAK Unmodified 1465.8657 0.86568536 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.208 51.776 2 1.3641E-05 25687 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.62 113.62 1142500000 219500000 196130000 186240000 3048700 2804200 3170500 120810000 127000000 133990000 2562500 2606600 2367300 24360000 24478000 25165000 0 0 0 24274000 21103000 22869000 0 0 0 22820 757 22105 424783;424784;424785;424786;424787;424788;424789;424790;424791;424792;424793;424794;424795;424796;424797;424798;424799;424800 260905;260906;260907;260908;260909;260910;260911;260912 260906 8 VWQQQGGK Unmodified 929.47191 0.47191456 597 P0AAI9 fabD Malonyl CoA-acyl carrier protein transacylase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.037 11.853 2 0.00099119 2783 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 114.54 97.613 2858800000 170430000 181350000 179640000 0 0 0 217940000 212700000 229940000 0 0 0 298130000 337480000 277200000 0 0 0 265730000 242050000 246280000 0 0 0 22821 597 22106 424801;424802;424803;424804;424805;424806;424807;424808;424809;424810;424811;424812 260913;260914;260915;260916;260917;260918;260919;260920;260921;260922;260923 260922 10 VWSNSGDLQNVYWDVLER Unmodified 2179.0334 0.033431979 1042 P0C0S1 mscS Small-conductance mechanosensitive channel yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 2 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 1 2 53.492 52.186 2;3 1.427E-45 25810 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 331.39 317.98 535410000 29425000 21351000 24947000 4615000 8543000 9302000 51563000 57742000 57992000 6289800 5806400 7282500 38536000 23934000 38135000 3367200 3340000 3152200 49973000 39815000 38798000 3201800 8297500 0 22822 1042 22107 424813;424814;424815;424816;424817;424818;424819;424820;424821;424822;424823;424824;424825;424826;424827;424828;424829;424830;424831;424832;424833;424834;424835;424836;424837;424838;424839;424840;424841;424842;424843;424844;424845;424846;424847;424848;424849 260924;260925;260926;260927;260928;260929;260930;260931;260932;260933;260934;260935;260936;260937 260926 14 VWTDEESNQTIIAGMGELHLDIIVDR Unmodified 2953.4491 0.44913679 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 3 1 1 2 3 3 2 2 1 1 1 1 55.452 54.006 3 7.019E-20 26289 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 151.66 150.74 1037600000 81457000 70622000 98077000 4657900 0 1237400 71089000 65622000 75798000 0 0 0 115860000 103930000 96714000 0 0 0 0 122600000 129940000 0 0 0 22823 264 22108 424850;424851;424852;424853;424854;424855;424856;424857;424858;424859;424860;424861;424862;424863;424864;424865;424866;424867;424868;424869;424870;424871;424872;424873 260938;260939;260940;260941;260942;260943;260944;260945;260946;260947;260948 260938 9 VWTFHLR Unmodified 957.51847 0.51847082 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.817 28.46 2 0.00017235 13044 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 168.06 162.02 2878500000 810680000 705050000 683890000 3608500 3059100 2819900 87116000 90124000 85746000 0 0 0 49352000 49452000 46388000 0 0 0 76057000 95552000 89568000 0 0 0 22824 1217 22109 424874;424875;424876;424877;424878;424879;424880;424881;424882;424883;424884;424885;424886;424887;424888 260949;260950;260951;260952;260953;260954;260955;260956;260957;260958;260959;260960;260961;260962;260963;260964;260965 260959 16 VWTGGGDEAALAR Unmodified 1301.6364 0.6364137 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.901 23.78 2 6.1556E-07 10448 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 143.89 143.89 2538900000 420600000 399430000 336600000 0 0 0 104980000 100850000 92954000 4639500 4352300 3664700 134460000 128980000 110800000 0 0 0 245150000 218780000 221690000 5759400 5200900 0 22825 696 22110 424889;424890;424891;424892;424893;424894;424895;424896;424897;424898;424899;424900;424901;424902;424903;424904;424905 260966;260967;260968;260969;260970;260971;260972;260973;260974;260975;260976;260977;260978;260979;260980;260981 260975 16 VWTGGGDEETLSK Unmodified 1377.6412 0.64122431 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By MS/MS 1 18.395 19.148 3 0.11287 6929 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 34.685 28.498 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22826 1097 22111 424906 260982 260982 1 VWTNCYHAYPAHAAFGGYK Unmodified 2211.9949 0.9948784 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 1 1 1 1 25.918 24.718 3;4 5.7121E-07 11404 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 101.15 97.655 1605500000 450400000 433030000 468380000 0 0 635850 77524000 77161000 61692000 0 1524500 2054100 2651100 2389600 0 0 0 0 7899600 10678000 9520700 0 0 0 22827 1486 22112 424907;424908;424909;424910;424911;424912;424913;424914;424915;424916;424917;424918;424919;424920;424921;424922;424923;424924;424925;424926 260983;260984;260985;260986;260987;260988;260989 260985 7 VWVLDFK Unmodified 905.50109 0.50108942 977 P0AG14 sohB Probable protease SohB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.681 44.193 2 0.005062 21506 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.21 84.285 401010000 20006000 16065000 15819000 4521200 4104400 4325500 27752000 31178000 29420000 18261000 17016000 15326000 28736000 27550000 27934000 2424200 0 3761000 33581000 29147000 23540000 6256400 6749200 7534100 22828 977 22113 424927;424928;424929;424930;424931;424932;424933;424934;424935;424936;424937;424938;424939;424940;424941;424942;424943;424944;424945;424946;424947;424948;424949 260990;260991;260992;260993;260994;260995;260996;260997;260998;260999;261000;261001;261002;261003;261004;261005;261006;261007;261008;261009 260999 20 VWVSNPSWPNHK Unmodified 1449.7153 0.71533272 31 P00509 aspC Aspartate aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 25.036 24.048 2;3 2.2086E-09 10233 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 200.6 196.84 4407100000 469610000 429750000 503350000 0 0 0 348640000 315130000 332700000 0 0 0 286650000 260030000 254400000 0 0 0 382480000 408090000 416290000 0 0 0 22829 31 22114 424950;424951;424952;424953;424954;424955;424956;424957;424958;424959;424960;424961;424962;424963;424964;424965;424966;424967;424968;424969;424970;424971;424972;424973 261010;261011;261012;261013;261014;261015;261016;261017;261018;261019;261020;261021;261022;261023;261024;261025;261026;261027;261028;261029;261030 261027 21 VWVVEGSK Unmodified 902.48617 0.48616764 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 21.246 21.295 2 0.0010066 6169 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 113.89 99.476 6264100000 950140000 826810000 791110000 0 463900 27125000 228030000 242630000 2085300 45835000 61375000 58804000 385520000 315300000 336770000 44462000 31754000 33110000 597160000 577820000 522830000 76626000 55201000 53093000 22830 352 22115 424974;424975;424976;424977;424978;424979;424980;424981;424982;424983;424984;424985;424986;424987;424988;424989;424990;424991;424992;424993;424994;424995;424996;424997 261031;261032;261033;261034;261035;261036;261037;261038;261039;261040;261041;261042;261043;261044;261045;261046;261047;261048;261049;261050;261051 261032 21 VWVVEGSKK Unmodified 1030.5811 0.58113065 352 P0A7K6 rplS 50S ribosomal protein L19 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 14.615 14.916 2 0.03716 4121 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 60.118 52.888 29745000 0 0 0 1485800 962410 0 0 0 0 3339200 3040600 2803000 0 0 0 3976400 0 1187700 0 0 0 4721300 4133200 4095100 22831 352 22116 424998;424999;425000;425001;425002;425003;425004;425005;425006;425007 261052;261053 261052 2 VWWAETTWQMQR Unmodified 1620.7507 0.75073195 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching 1 1 1 1 48.193 46.967 2 1.2903E-11 22754 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 218.48 216.32 67730000 20652000 22501000 23489000 0 0 0 0 0 0 0 0 0 0 0 1087700 0 0 0 0 0 0 0 0 0 22832 1107 22117 425008;425009;425010;425011 261054;261055 261055 2 VYAAIEAGDK Unmodified 1035.5237 0.52367535 372 P0A7U7 rpsT 30S ribosomal protein S20 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 1 1 1 17.767 18.255 2 0.00034748 5220 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 108.98 82.015 5166100000 203530000 2105300000 1611000000 0 11273000 10832000 105020000 97521000 94665000 33940000 30715000 27373000 119440000 124850000 102150000 12011000 7781000 10322000 152510000 130120000 118650000 20384000 19641000 16953000 22833 372 22118 425012;425013;425014;425015;425016;425017;425018;425019;425020;425021;425022;425023;425024;425025;425026;425027;425028;425029;425030;425031;425032;425033;425034;425035;425036;425037;425038;425039;425040;425041 261056;261057;261058;261059;261060;261061;261062;261063;261064;261065;261066;261067;261068;261069;261070;261071;261072;261073;261074;261075;261076;261077;261078;261079;261080;261081 261059 23 VYAAIEAGDKAAAQK Unmodified 1504.7886 0.78855725 372 P0A7U7 rpsT 30S ribosomal protein S20 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 1 1 1 1 2 1 1 15.81 16.162 2;3 4.9099E-06 4054 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 85.457 82.547 89572000 0 0 0 9047100 8445000 7817800 0 0 0 10961000 9064900 9537000 0 0 0 5342900 5198200 5816900 0 0 0 7453000 5951300 4936200 22834 372 22119 425042;425043;425044;425045;425046;425047;425048;425049;425050;425051;425052;425053;425054;425055;425056;425057;425058;425059 261082;261083;261084;261085;261086;261087 261085 5 VYAAQSTHLPLK Unmodified 1326.7296 0.7295858 1001 P0AGA2 secY Protein translocase subunit SecY yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 18.639 19.083 2;3 2.2764E-06 6813 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 148.56 136.51 935520000 35270000 34155000 28398000 2645900 2476000 2339300 91313000 89854000 78366000 9573700 8669100 5952700 76798000 70634000 54512000 0 0 0 117540000 103740000 111560000 3916800 3433600 4378500 22835 1001 22120 425060;425061;425062;425063;425064;425065;425066;425067;425068;425069;425070;425071;425072;425073;425074;425075;425076;425077;425078;425079;425080;425081;425082;425083;425084;425085;425086;425087;425088;425089;425090;425091;425092;425093;425094;425095;425096;425097 261088;261089;261090;261091;261092;261093;261094;261095;261096;261097;261098;261099;261100;261101;261102;261103;261104;261105;261106;261107;261108;261109 261105 20 VYAGNEHNHAAQQPQVLDI Unmodified 2103.0134 0.013365238 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 25.683 24.625 2;3 8.6888E-23 10959 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 195.72 191.58 6371600000 883160000 822580000 843780000 2772100 29422000 27288000 202700000 197550000 198300000 61228000 47064000 47618000 431280000 391390000 318380000 45199000 36294000 39643000 532020000 542540000 518670000 56436000 50686000 45584000 22836 569 22121 425098;425099;425100;425101;425102;425103;425104;425105;425106;425107;425108;425109;425110;425111;425112;425113;425114;425115;425116;425117;425118;425119;425120;425121;425122;425123;425124;425125;425126;425127;425128;425129;425130;425131;425132;425133;425134;425135;425136;425137;425138;425139 261110;261111;261112;261113;261114;261115;261116;261117;261118;261119;261120;261121;261122;261123;261124;261125;261126;261127;261128;261129;261130;261131;261132;261133;261134;261135;261136;261137;261138;261139;261140;261141;261142;261143;261144 261133 35 VYCNAGR Unmodified 838.37557 0.37557133 1220 P23857 pspE Thiosulfate sulfurtransferase PspE yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 10.348 11.178 2 0.0037109 2520 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.84 91.824 882900000 0 28191000 26150000 0 0 0 171450000 140170000 156130000 0 0 0 52663000 59883000 53235000 0 0 0 71793000 59988000 63241000 0 0 0 22837 1220 22122 425140;425141;425142;425143;425144;425145;425146;425147;425148;425149;425150 261145;261146 261145 2 VYDALEVQNGNER Unmodified 1505.711 0.71103521 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 22.963 22.353 2;3 2.5581E-17 9570 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 256.48 249.82 2296000000 49116000 44644000 45865000 28410000 31192000 30778000 150420000 159190000 155710000 51747000 82053000 100600000 162190000 137370000 140370000 32732000 21181000 23243000 193940000 193120000 205780000 93143000 76107000 87071000 22838 646 22123 425151;425152;425153;425154;425155;425156;425157;425158;425159;425160;425161;425162;425163;425164;425165;425166;425167;425168;425169;425170;425171;425172;425173;425174;425175;425176;425177;425178;425179;425180;425181;425182;425183;425184;425185;425186;425187;425188;425189;425190;425191;425192;425193;425194;425195;425196;425197;425198 261147;261148;261149;261150;261151;261152;261153;261154;261155;261156;261157;261158;261159;261160;261161;261162;261163;261164;261165;261166;261167;261168;261169;261170;261171;261172;261173;261174;261175;261176;261177;261178;261179;261180;261181;261182 261168 36 VYDALYQTITHGAPNYVK Unmodified 2052.0316 0.031641065 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 39.751 38.076 2;3 2.2075E-36 18887 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 230.23 229.8 1183500000 81279000 69596000 70272000 0 0 368400 153380000 147870000 162250000 0 0 0 75601000 71252000 75728000 0 0 0 105660000 91068000 79132000 0 0 0 22839 1588 22124 425199;425200;425201;425202;425203;425204;425205;425206;425207;425208;425209;425210;425211;425212;425213;425214;425215;425216;425217;425218;425219;425220;425221;425222;425223 261183;261184;261185;261186;261187;261188;261189;261190;261191;261192;261193;261194;261195;261196;261197;261198 261186 16 VYDGESLKDTDPK Unmodified 1465.6937 0.69365381 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 1 1 2 1 2 1 1 1 1 2 1 2 2 2 14.023 14.819 2;3 4.3362E-07 4779 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 183.99 180.9 1286900000 245640000 280570000 242840000 3647700 2460700 4190400 172970000 35982000 149260000 2536200 2430800 2790500 23632000 26826000 7816000 0 0 0 31090000 27567000 24629000 0 0 0 22840 757 22125 425224;425225;425226;425227;425228;425229;425230;425231;425232;425233;425234;425235;425236;425237;425238;425239;425240;425241;425242;425243;425244;425245;425246;425247;425248;425249;425250;425251 261199;261200;261201;261202;261203;261204;261205;261206;261207;261208 261204 10 VYDPAEQSDGYR Unmodified 1398.6052 0.60517315 1840 P76243 yeaO Uncharacterized protein YeaO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.713 19.279 2 3.0417E-06 7288 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 137.95 137.95 258110000 33755000 27706000 26668000 0 0 0 37165000 32003000 30138000 0 0 0 12311000 11598000 10232000 0 0 0 14191000 12519000 9823100 0 0 0 22841 1840 22126 425252;425253;425254;425255;425256;425257;425258;425259;425260;425261;425262;425263 261209;261210;261211 261209 2 VYEEIDEVMYEAR Unmodified 1644.7341 0.73413841 896 P0AEY3 mazG Nucleoside triphosphate pyrophosphohydrolase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 40.957 39.003 2 1.6933E-06 19069 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 154.35 137.32 49515000 0 0 0 0 0 0 9292400 8549200 11370000 0 0 0 0 0 0 0 0 0 10999000 0 9304300 0 0 0 22842 896 22127 425264;425265;425266;425267;425268 261212;261213 261212 2 VYEQFLPK Unmodified 1022.5437 0.54368251 672 P0ABQ4 folA Dihydrofolate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.158 28.801 2 0.0062058 13363 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 85.359 76.537 566480000 41436000 38212000 33982000 0 0 0 53818000 49345000 48616000 0 0 0 41340000 41153000 40975000 0 0 0 56241000 60294000 61066000 0 0 0 22843 672 22128 425269;425270;425271;425272;425273;425274;425275;425276;425277;425278;425279;425280 261214;261215;261216;261217;261218;261219;261220;261221;261222;261223;261224;261225 261219 12 VYESQDDAVEAILGGK Unmodified 1692.8206 0.82064524 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 44.078 42.637 2 0.00042493 20796 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.864 64.083 100550000 27058000 23153000 22995000 0 0 0 4878700 0 0 0 0 0 4183100 3578500 3045800 0 0 0 5817400 5844300 0 0 0 0 22844 118 22129 425281;425282;425283;425284;425285;425286;425287;425288;425289 261226;261227 261227 0 VYEYNADSASCHTEAGLILER Unmodified 2397.0907 0.090688861 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.046 30.706 3 1.1065E-28 14424 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 200.39 200.39 267010000 19785000 17345000 19909000 0 0 0 31434000 21221000 24839000 0 0 0 23951000 18812000 18399000 0 0 0 27832000 20480000 23001000 0 0 0 22845 880 22130 425290;425291;425292;425293;425294;425295;425296;425297;425298;425299;425300;425301 261228;261229;261230;261231;261232;261233;261234;261235;261236;261237;261238;261239 261235 12 VYFEKPR Unmodified 937.50215 0.50215205 639;45 P0AB91;P00888 aroG;aroF Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive;Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive no no 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.324 14.007 2 0.0021973 4265 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.94 129.09 738560000 140280000 142470000 136970000 2400800 1553800 2508300 30939000 33010000 29583000 2761200 2299100 3229200 31742000 30550000 35228000 0 0 0 32539000 34984000 36553000 3109500 3783600 2060100 22846 639;45 22131 425302;425303;425304;425305;425306;425307;425308;425309;425310;425311;425312;425313;425314;425315;425316;425317;425318;425319;425320;425321;425322 261240;261241;261242;261243;261244;261245 261243 6 VYGDDAPQAWQK Unmodified 1376.6361 0.63607935 1371 P31550 thiB Thiamine-binding periplasmic protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 23.022 22.352 2 2.6819E-05 9838 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 117.53 108.34 229020000 5590300 6538500 6594500 0 0 0 20505000 23783000 23021000 0 0 0 18377000 20541000 15807000 0 0 0 30832000 27247000 30179000 0 0 0 22847 1371 22132 425323;425324;425325;425326;425327;425328;425329;425330;425331;425332;425333;425334;425335 261246;261247;261248;261249;261250;261251;261252;261253;261254 261247 9 VYGEDPHGLSPR Unmodified 1325.6364 0.6364137 194 P08957 hsdM Type I restriction enzyme EcoKI M protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 2 2 2 2 2 2 1 1 1 15.636 16.387 2;3 6.9285E-05 5634 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 120.09 111.87 376670000 20185000 18450000 14684000 0 0 476470 31301000 34315000 26863000 0 0 0 33041000 31958000 26195000 0 0 0 45984000 46572000 43429000 986520 1141900 1088700 22848 194 22133 425336;425337;425338;425339;425340;425341;425342;425343;425344;425345;425346;425347;425348;425349;425350;425351;425352;425353;425354;425355;425356;425357;425358;425359;425360;425361;425362;425363 261255;261256;261257;261258;261259;261260;261261;261262;261263;261264;261265 261257 11 VYGENACQALFQSRPEAIVR Unmodified 2307.143 0.1429992 1022 P0AGJ5 yfiF Uncharacterized tRNA/rRNA methyltransferase YfiF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 35.61 33.847 3 7.8186E-19 16231 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 176.46 168.89 94341000 20824000 22629000 22615000 0 0 0 0 0 5546400 2447900 3016600 2091700 3493300 0 0 0 0 0 6952300 0 4724700 0 0 0 22849 1022 22134 425364;425365;425366;425367;425368;425369;425370;425371;425372;425373 261266;261267;261268;261269 261267 3 VYGGEADAADK Unmodified 1094.488 0.48801813 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.633 12.464 2 0.0012409 3364 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 81.338 72.997 378570000 0 4333300 4752500 538680 0 703220 70942000 71856000 0 0 1414200 0 50732000 46425000 46127000 0 0 0 27582000 26059000 27100000 0 0 0 22850 25 22135 425374;425375;425376;425377;425378;425379;425380;425381;425382;425383;425384;425385;425386 261270;261271;261272;261273;261274 261270 5 VYGGEADAADKAEAANK Unmodified 1678.7798 0.77984305 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 2 2 2 1 1 1 12.496 13.262 2;3 1.5558E-08 3679 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 125.03 120.52 306940000 0 9377100 5101700 0 0 0 48844000 45470000 41141000 3551200 3045500 3107000 30325000 35440000 29076000 0 0 0 19407000 18786000 14273000 0 0 0 22851 25 22136 425387;425388;425389;425390;425391;425392;425393;425394;425395;425396;425397;425398;425399;425400;425401;425402;425403 261275;261276;261277;261278;261279;261280;261281;261282;261283;261284;261285 261285 10 VYGGEADAADKAEAANKK Unmodified 1806.8748 0.87480607 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 2 2 1 2 2 2 1 1 1 2 1 2 2 2 3 1 1 1 11.777 12.356 2;3;4 6.9891E-14 2713 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 190.37 181.64 749700000 21502000 18687000 0 3150000 9067900 7603800 0 0 65362000 44202000 38411000 37836000 50864000 43574000 52682000 17492000 16391000 26447000 84913000 72731000 110960000 8944800 9209400 9676300 22852 25 22137 425404;425405;425406;425407;425408;425409;425410;425411;425412;425413;425414;425415;425416;425417;425418;425419;425420;425421;425422;425423;425424;425425;425426;425427;425428;425429;425430;425431;425432;425433;425434;425435 261286;261287;261288;261289;261290;261291;261292;261293;261294;261295;261296;261297;261298;261299;261300 261293 15 VYGYNNIPDEPVQASLIMGTHR Unmodified 2473.206 0.20599339 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 2 42.791 41.112 2;3 4.9131E-28 19362 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 137.86 136.56 4471200000 424710000 387100000 377070000 2332600 3003900 2365600 289740000 286010000 257720000 0 0 4059800 403300000 339230000 410100000 0 0 0 456390000 407740000 420350000 0 0 0 22853 161 22138 425436;425437;425438;425439;425440;425441;425442;425443;425444;425445;425446;425447;425448;425449;425450;425451;425452;425453;425454;425455;425456;425457;425458;425459;425460;425461;425462;425463 261301;261302;261303;261304;261305;261306;261307;261308;261309;261310;261311;261312;261313;261314;261315;261316;261317 261314 16 VYHNVANL Unmodified 928.47667 0.47666558 413 P0A8A2 yeeN Probable transcriptional regulatory protein YeeN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 1 18.227 18.763 2 0.0032287 7182 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 93.885 92.909 2838800000 123610000 140930000 109600000 0 0 0 370190000 309940000 277890000 0 0 0 226240000 227150000 203320000 0 816270 1006900 266120000 275980000 305980000 0 0 0 22854 413 22139 425464;425465;425466;425467;425468;425469;425470;425471;425472;425473;425474;425475;425476;425477;425478 261318;261319;261320;261321;261322;261323;261324;261325;261326;261327;261328;261329 261319 12 VYLAEEGGR Unmodified 992.49271 0.49270958 209 P09169 ompT Protease 7 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.85 16.556 2 0.00060132 4223 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 106.04 83.911 113560000 11444000 12734000 10820000 2855800 2857100 3057000 1980800 0 1843300 0 1855100 0 9036100 7480900 5735600 0 0 0 10373000 12226000 11593000 2798100 2617200 2251300 22855 209 22140 425479;425480;425481;425482;425483;425484;425485;425486;425487;425488;425489;425490;425491;425492;425493;425494;425495;425496 261330;261331;261332;261333;261334;261335 261333 1 VYLAHEGINAQISVPASNVETFR Unmodified 2514.2867 0.28668655 1238 P24188 yceA UPF0176 protein YceA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 38.767 36.965 3 3.2085E-10 17945 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 124.08 120.8 99636000 0 0 0 0 0 0 5609600 0 0 1556200 0 0 7519900 5959800 7746300 0 0 0 26910000 22490000 21845000 0 0 0 22856 1238 22141 425497;425498;425499;425500;425501;425502;425503;425504 261336;261337;261338 261337 3 VYLAVKR Unmodified 847.52797 0.52797287 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 13.93 14.169 2 0.0002895 3538 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 163.53 136.41 324150000 4806200 4857300 5373500 0 0 0 0 0 0 16919000 18130000 18468000 0 0 0 68231000 17560000 18076000 0 0 0 43290000 55401000 53039000 22857 463 22142 425505;425506;425507;425508;425509;425510;425511;425512;425513;425514;425515;425516 261339;261340;261341;261342;261343;261344;261345;261346;261347 261346 9 VYLEEHK Unmodified 916.46543 0.46543219 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 11.451 12.316 2 0.0026472 3239 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.28 101.2 644080000 36711000 28499000 24137000 3093600 3797500 0 98435000 80376000 87491000 0 0 0 60135000 57400000 54320000 0 0 0 57340000 0 52344000 0 0 0 22858 285 22143 425517;425518;425519;425520;425521;425522;425523;425524;425525;425526;425527;425528;425529 261348;261349;261350;261351;261352;261353;261354;261355;261356;261357;261358 261348 11 VYLGEDFR Unmodified 997.4869 0.48689592 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 28.962 27.633 2 0.0030532 12153 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 95.352 84.283 68291000 0 0 0 0 0 0 8433000 8353900 9266100 0 0 0 6011600 7355100 6223300 0 0 0 7141000 7019500 8487400 0 0 0 22859 559 22144 425530;425531;425532;425533;425534;425535;425536;425537;425538 261359 261359 1 VYLGEDFRL Unmodified 1110.571 0.5709599 559 P0A9V1 lptB Lipopolysaccharide export system ATP-binding protein LptB yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.753 42.338 2 0.0080706 15038 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 70.919 55.768 162500000 8158400 5759700 6350100 3870100 4281700 3156700 11526000 14274000 12877000 0 8399000 6878400 7175900 5992300 7450600 3673400 2796500 4141300 14436000 14404000 10264000 0 3195800 3441300 22860 559 22145 425539;425540;425541;425542;425543;425544;425545;425546;425547;425548;425549;425550;425551;425552;425553;425554;425555;425556;425557;425558;425559;425560 261360;261361;261362 261360 3 VYLIDEVHMLSR Unmodified 1473.765 0.76498503 127 P06710 dnaX DNA polymerase III subunit tau yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.832 39.959 3 4.3037E-05 19915 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 88.021 83.475 238640000 26707000 23384000 21734000 1084700 1185000 652140 12854000 16815000 14422000 4033100 4310700 4634200 14144000 15315000 14921000 0 0 0 13972000 20502000 22476000 1818100 2018200 1659100 22861 127 22146 425561;425562;425563;425564;425565;425566;425567;425568;425569;425570;425571;425572;425573;425574;425575;425576;425577;425578;425579;425580;425581 261363;261364;261365;261366;261367;261368 261365 5 VYLNPQDCSVINDEALNR Unmodified 2119.0004 0.0004172906 1510 P39173 yeaD Putative glucose-6-phosphate 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 37.711 36.038 2;3 4.7676E-45 17436 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 317.84 304.16 1673100000 109120000 103680000 91923000 0 0 0 162180000 150670000 135670000 0 0 0 143260000 136800000 132170000 0 0 0 165510000 173530000 168540000 0 0 0 22862 1510 22147 425582;425583;425584;425585;425586;425587;425588;425589;425590;425591;425592;425593;425594;425595;425596;425597;425598;425599;425600;425601;425602;425603;425604;425605 261369;261370;261371;261372;261373;261374;261375;261376;261377;261378;261379;261380;261381;261382;261383;261384;261385;261386;261387;261388 261375 19 VYLQCFDADELK Unmodified 1499.6966 0.6966307 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.892 37.267 2 2.7841E-05 17458 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 116.77 108.23 69641000 3172600 3708300 3423900 0 0 0 0 7913500 8737300 0 0 0 9739600 5522800 7413400 0 0 0 6393100 7597300 6019600 0 0 0 22863 213 22148 425606;425607;425608;425609;425610;425611;425612;425613;425614;425615;425616 261389;261390;261391;261392;261393 261391 3 VYLQCFDADELKR Unmodified 1655.7977 0.79774172 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 1 2 2 2 2 2 31.98 30.612 2;3 5.5661E-24 14616 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 239.93 236.4 1549200000 93501000 17261000 12324000 0 0 0 212430000 204560000 217620000 0 0 0 28051000 204500000 37149000 0 0 0 185900000 175010000 160940000 0 0 0 22864 213 22149 425617;425618;425619;425620;425621;425622;425623;425624;425625;425626;425627;425628;425629;425630;425631;425632;425633;425634;425635;425636;425637 261394;261395;261396;261397;261398;261399;261400;261401;261402;261403;261404;261405;261406;261407;261408;261409;261410;261411 261399 18 VYLVIEK Unmodified 862.51641 0.51640513 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.255 26.276 2 0.006056 11744 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.068 83.006 1032000000 88377000 79148000 77741000 0 0 0 84675000 72480000 77696000 0 0 0 92303000 89150000 88686000 0 829920 1377400 91752000 96243000 91507000 0 0 0 22865 1172 22150 425638;425639;425640;425641;425642;425643;425644;425645;425646;425647;425648;425649;425650;425651 261412;261413;261414;261415;261416;261417;261418;261419;261420;261421;261422;261423 261420 12 VYPGNYDEYMTAATQAR Unmodified 1948.8625 0.86252683 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 36.285 34.729 2;3 7.2027E-19 16791 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 191.29 183.42 410260000 31218000 30718000 27850000 0 0 0 29730000 34600000 32769000 0 0 0 34548000 38231000 34318000 0 0 0 36810000 38031000 41435000 0 0 0 22866 558 22151 425652;425653;425654;425655;425656;425657;425658;425659;425660;425661;425662;425663;425664;425665;425666;425667;425668;425669;425670;425671;425672;425673;425674;425675 261424;261425;261426;261427;261428;261429;261430;261431;261432;261433;261434;261435;261436 261431 12 VYPQAGNR Unmodified 903.45626 0.45626449 1624 P60595 hisH Imidazole glycerol phosphate synthase subunit HisH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 11.189 11.99 2 0.060954 3082 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 57.463 41.31 86792000 21744000 17403000 17577000 0 0 0 0 0 10762000 0 0 0 0 9891300 0 0 0 0 0 9413900 0 0 0 0 22867 1624 22152 425676;425677;425678;425679;425680;425681;425682 261437;261438;261439 261438 2 VYQAYQEACDR Unmodified 1401.5983 0.59831364 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.669 16.169 2 1.6057E-07 4136 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 168.83 164.21 150810000 11127000 9555400 10995000 0 0 0 10109000 7935000 8584800 1507500 1121100 1155300 7111600 5839500 5497100 14138000 11839000 12258000 8240800 7771400 6961000 3187100 3055300 2818500 22868 80 22153 425683;425684;425685;425686;425687;425688;425689;425690;425691;425692;425693;425694;425695;425696;425697;425698;425699;425700;425701;425702;425703 261440;261441;261442;261443;261444;261445;261446;261447;261448 261441 8 VYQFQDEDR Unmodified 1198.5255 0.52546627 1037 P0C0K3 rdoA Protein RdoA yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.816 19.381 2 0.00185 7312 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.04 106.04 100030000 12852000 7633200 7564200 0 0 0 6825100 7852700 5480200 0 0 0 6081600 6306200 5813100 0 0 0 13012000 9811800 10801000 0 0 0 22869 1037 22154 425704;425705;425706;425707;425708;425709;425710;425711;425712;425713;425714;425715 261449;261450 261449 0 VYQLLAELITSDVR Unmodified 1618.893 0.89302232 324 P0A7A7 plsB Glycerol-3-phosphate acyltransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.727 53.289 2 5.297E-07 19491 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 117.94 103.7 147240000 0 6230200 0 2773800 2056700 3404300 11656000 12165000 14381000 4683400 4886600 4735700 13967000 12927000 8364200 0 0 0 13971000 13182000 7970900 2868900 4005600 3006800 22870 324 22155 425716;425717;425718;425719;425720;425721;425722;425723;425724;425725;425726;425727;425728;425729;425730;425731;425732;425733;425734 261451;261452;261453 261453 0 VYQLPEATR Unmodified 1075.5662 0.56620887 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.47 21.9 2 1.2028E-05 7238 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 163.99 146.6 2732600000 197400000 164300000 146710000 7115400 4323200 7031400 239200000 183730000 186030000 38749000 30828000 38728000 204030000 208660000 179630000 9258000 5938800 6556800 269890000 274060000 286740000 13504000 15781000 14352000 22871 882 22156 425735;425736;425737;425738;425739;425740;425741;425742;425743;425744;425745;425746;425747;425748;425749;425750;425751;425752;425753;425754;425755;425756;425757;425758 261454;261455;261456;261457;261458;261459;261460;261461;261462;261463;261464;261465;261466;261467;261468;261469;261470;261471;261472;261473;261474;261475 261465 22 VYRPSAWAAHGMDIEGQDYR Unmodified 2321.0647 0.064748882 1758 P69922 fucI L-fucose isomerase yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.071 26.947 4 0.11717 12220 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 30.969 27.237 207560000 20941000 20240000 20775000 0 0 0 12060000 13474000 8355400 0 0 2510500 5714200 9062500 7837200 31042000 2824200 4057100 13052000 9944100 9522600 6086900 4772100 5292800 22872 1758 22157 425759;425760;425761;425762;425763;425764;425765;425766;425767;425768;425769;425770;425771;425772;425773;425774;425775;425776;425777 261476;261477 261477 0 VYSGVVNSGDTVLNSVK Unmodified 1736.8945 0.89447888 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 2 1 2 3 3 2 2 1 3 3 2 1 2 2 2 2 3 1 1 1 33.723 32.256 2;3 2.4615E-14 15384 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.09 164.99 26080000000 2351500000 2257000000 1973700000 11498000 16135000 13753000 1776900000 1774400000 1744100000 20066000 21290000 11754000 2176200000 1888600000 1731100000 10667000 9128100 7243200 2623600000 2881700000 2751500000 10582000 8056300 9590800 22873 264 22158 425778;425779;425780;425781;425782;425783;425784;425785;425786;425787;425788;425789;425790;425791;425792;425793;425794;425795;425796;425797;425798;425799;425800;425801;425802;425803;425804;425805;425806;425807;425808;425809;425810;425811;425812;425813;425814;425815;425816;425817;425818;425819;425820;425821;425822;425823;425824;425825 261478;261479;261480;261481;261482;261483;261484;261485;261486;261487;261488;261489;261490;261491;261492;261493;261494;261495;261496;261497;261498;261499;261500;261501;261502;261503;261504;261505;261506;261507;261508;261509;261510;261511;261512;261513;261514;261515;261516;261517;261518;261519;261520;261521;261522;261523;261524 261510 42 VYSHIAPYMGGPEK Unmodified 1547.7442 0.74424959 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 1 3 2 3 3 2 2 21.439 21.717 2;3 2.4182E-05 8835 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 93.345 86.677 305570000 24529000 20618000 21586000 0 0 0 17306000 30634000 12931000 0 0 0 24422000 20298000 24129000 0 0 0 40603000 32693000 35822000 0 0 0 22874 891 22159 425826;425827;425828;425829;425830;425831;425832;425833;425834;425835;425836;425837;425838;425839;425840;425841;425842;425843;425844;425845;425846;425847;425848;425849;425850;425851;425852 261525;261526;261527;261528;261529;261530;261531;261532;261533;261534;261535;261536;261537;261538;261539;261540;261541 261529 17 VYSNPDFIGVQLGGAVK Unmodified 1762.9254 0.92538508 276 P0A6S7 gpsA Glycerol-3-phosphate dehydrogenase [NAD(P)+] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 44.067 42.523 2 1.6631E-08 20574 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 128.67 123.96 175360000 0 0 0 0 0 0 0 15009000 18804000 0 0 0 0 24196000 27610000 0 0 0 29187000 33744000 26810000 0 0 0 22875 276 22160 425853;425854;425855;425856;425857;425858;425859 261542;261543;261544;261545;261546;261547;261548 261546 7 VYSYTEK Unmodified 888.4229 0.42289868 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 1 2 2 2 1 1 1 2 2 2 1 2 1 2 2 2 12.618 13.15 1;2 0.0023307 3039 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 114.19 114.19 7511400000 76295000 73606000 83581000 4889600 4508700 4917300 64684000 46390000 4150200 569450000 486870000 483780000 8228300 8624500 4680600 1316400000 1361800000 1430200000 9406200 37439000 4240300 498550000 460960000 467670000 22876 463 22161 425860;425861;425862;425863;425864;425865;425866;425867;425868;425869;425870;425871;425872;425873;425874;425875;425876;425877;425878;425879;425880;425881;425882;425883;425884;425885;425886;425887;425888;425889;425890;425891;425892;425893;425894;425895;425896;425897;425898 261549;261550;261551;261552;261553;261554;261555;261556 261553 7 VYTDVSYLACAK Unmodified 1388.6646 0.66460229 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.626 30.034 2 3.1303E-08 11196 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 163.94 161.21 355920000 18116000 16806000 14058000 8351200 6261300 6289800 17439000 14798000 13135000 9256400 8725400 9005900 14206000 12379000 11656000 0 0 0 39897000 36898000 42680000 17755000 18817000 19389000 22877 215 22162 425899;425900;425901;425902;425903;425904;425905;425906;425907;425908;425909;425910;425911;425912;425913;425914;425915;425916;425917;425918;425919 261557;261558;261559;261560;261561;261562;261563;261564;261565;261566;261567;261568;261569;261570;261571 261561 15 VYTQSWEGDCPK Unmodified 1468.6293 0.62927941 1270 P25740 rfaG Lipopolysaccharide core biosynthesis protein RfaG yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.197 21.243 2 0.0010889 6882 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 76.228 69.844 24500000 0 2630400 0 0 0 0 3589700 4311300 2829700 0 2299700 3157800 0 1904600 0 924430 0 0 0 0 2852000 0 0 0 22878 1270 22163 425920;425921;425922;425923;425924;425925;425926;425927;425928 261572;261573;261574 261573 3 VYTTAPALQFYSGNFLGGTPSR Unmodified 2346.1644 0.16444615 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 2 1 1 1 51.787 50.551 2;3 2.5383E-15 24925 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 190.44 185.97 307080000 36635000 39229000 38322000 0 0 0 27830000 25325000 22861000 0 0 0 16182000 13962000 27115000 0 0 0 20945000 17938000 20737000 0 0 0 22879 507 22164 425929;425930;425931;425932;425933;425934;425935;425936;425937;425938;425939;425940;425941 261575;261576;261577;261578;261579 261576 5 VYTTTPK Unmodified 808.43307 0.43306943 367 P0A7S3 rpsL 30S ribosomal protein S12 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.387 11.994 2 0.0031978 2553 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 108.98 43.652 6070600000 820600000 814910000 785180000 30028000 34089000 52207000 300030000 252440000 256270000 79798000 68497000 65350000 331660000 285600000 309240000 50633000 37072000 42514000 444800000 415630000 440780000 48007000 51188000 54058000 22880 367 22165 425942;425943;425944;425945;425946;425947;425948;425949;425950;425951;425952;425953;425954;425955;425956;425957;425958;425959;425960;425961;425962;425963;425964;425965 261580;261581;261582;261583;261584;261585;261586;261587;261588;261589;261590;261591;261592;261593;261594;261595;261596;261597;261598;261599;261600;261601;261602;261603 261585 24 VYVEGAWNR Unmodified 1092.5352 0.53524309 209 P09169 ompT Protease 7 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 24.729 23.666 2 0.00021992 8115 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 124.83 99.098 31389000 0 0 0 4850900 4052400 3592200 0 0 0 837420 0 2039800 0 0 0 0 0 1336200 0 0 0 5183500 3633300 5863400 22881 209 22166 425966;425967;425968;425969;425970;425971;425972;425973;425974 261604;261605;261606 261604 3 VYVQAGTPFR Unmodified 1136.5978 0.59784335 1478 P37637 mdtF Multidrug resistance protein MdtF yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 26.404 24.804 2 0.067313 8138 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 60.436 14.011 15601000 0 0 0 1661700 960290 0 0 0 0 3439700 5778000 3761000 0 0 0 0 0 0 0 0 0 0 0 0 22882 1478 22167 425975;425976;425977;425978;425979 261607 261607 0 VYVTFLNDKDEDAVK Unmodified 1754.8727 0.87268081 342 P0A7G2 rbfA Ribosome-binding factor A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS 2 2 2 2 1 1 2 2 2 2 3 2 2 1 2 2 2 2 31.645 30.077 2;3 4.4057E-20 13991 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 216.06 198.22 746940000 100430000 99569000 74735000 2725600 1157300 1678800 61018000 57771000 64929000 19419000 14035000 13503000 28682000 21855000 30448000 0 0 0 58697000 50430000 45859000 0 0 0 22883 342 22168 425980;425981;425982;425983;425984;425985;425986;425987;425988;425989;425990;425991;425992;425993;425994;425995;425996;425997;425998;425999;426000;426001;426002;426003;426004;426005;426006;426007;426008;426009;426010;426011;426012;426013 261608;261609;261610;261611;261612;261613;261614;261615;261616;261617;261618;261619;261620 261620 13 VYYDLLEQR Unmodified 1197.603 0.60298831 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.964 34.495 2 2.9888E-06 13217 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 176.4 165.99 1802400000 268950000 0 261500000 5190400 0 0 0 0 0 3024900 3844000 3473400 191690000 189650000 0 3780100 2307400 2145100 0 430860000 400410000 11470000 12792000 11346000 22884 937 22169 426014;426015;426016;426017;426018;426019;426020;426021;426022;426023;426024;426025;426026;426027;426028;426029 261621;261622;261623;261624;261625;261626;261627;261628;261629;261630;261631;261632;261633;261634 261627 10 VYYHHTGHIGGIK Unmodified 1480.7575 0.75753189 569 P0AA10 rplM 50S ribosomal protein L13 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 2 3 3 2 3 2 3 3 3 3 3 2 2 3 4 3 3 3 3 11.522 12.15 2;3;4 1.0242E-23 3108 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 228.64 209.33 7275100000 1049600000 713100000 673460000 40949000 43747000 36053000 346350000 336330000 205890000 55355000 41445000 50591000 431920000 356620000 410950000 90526000 77927000 91982000 657070000 676450000 663600000 75720000 73506000 75948000 22885 569 22170 426030;426031;426032;426033;426034;426035;426036;426037;426038;426039;426040;426041;426042;426043;426044;426045;426046;426047;426048;426049;426050;426051;426052;426053;426054;426055;426056;426057;426058;426059;426060;426061;426062;426063;426064;426065;426066;426067;426068;426069;426070;426071;426072;426073;426074;426075;426076;426077;426078;426079;426080;426081;426082;426083;426084;426085;426086;426087;426088;426089;426090;426091;426092;426093;426094;426095;426096 261635;261636;261637;261638;261639;261640;261641;261642;261643;261644;261645;261646;261647;261648;261649;261650;261651;261652;261653;261654;261655;261656;261657;261658;261659;261660;261661;261662;261663;261664;261665;261666;261667;261668;261669;261670;261671;261672;261673;261674;261675;261676;261677;261678;261679;261680;261681;261682;261683;261684;261685;261686;261687;261688;261689;261690;261691;261692 261655 58 WAADIHITPDGR Unmodified 1350.668 0.66804818 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1 29.289 28.06 2;3 6.9243E-06 12811 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.32 123.42 1129400000 395310000 367670000 357150000 704770 416500 742770 0 0 7437400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22886 1610 22171 426097;426098;426099;426100;426101;426102;426103;426104;426105;426106 261693;261694;261695;261696;261697;261698;261699 261699 7 WAAMLHEVGLNINHSGLHR Unmodified 2154.0905 0.090510122 953 P0AFL6 ppx Exopolyphosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.328 28.972 4 0.004246 13989 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 49.425 46.584 236840000 22186000 34626000 25338000 0 0 0 18728000 17503000 21120000 0 0 0 17608000 12305000 10818000 0 0 0 18633000 20426000 17546000 0 0 0 22887 953 22172 426107;426108;426109;426110;426111;426112;426113;426114;426115;426116;426117;426118 261700;261701 261700 2 WAAVILEALTR Unmodified 1241.7132 0.71320746 1134 P17109 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.581 52.141 2 0.00020334 25570 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.53 93.007 102670000 6551400 6826100 6495100 0 0 0 9180600 8603300 8696900 0 0 0 7694000 7860700 8380100 0 0 0 13156000 9945400 9278100 0 0 0 22888 1134 22173 426119;426120;426121;426122;426123;426124;426125;426126;426127;426128;426129;426130 261702;261703;261704;261705;261706;261707 261703 6 WADAVASERPAFVR Unmodified 1573.8001 0.80012499 1724 P68739 nfi Endonuclease V yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.853 27.461 3 0.00010102 12597 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 68.034 60.251 142130000 28072000 24481000 23419000 811300 0 1069000 9402000 10610000 10993000 2300700 1833300 1422700 0 0 0 8399400 5903600 0 0 0 11527000 1885900 0 0 22889 1724 22174 426131;426132;426133;426134;426135;426136;426137;426138;426139;426140;426141;426142;426143;426144;426145 261708;261709 261708 2 WADGTPVTAQDFVYSWQR Unmodified 2125.9858 0.9857535 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.155 49.899 2 4.4902E-23 24535 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 235.73 212.81 181130000 12649000 10925000 11235000 0 0 0 18433000 19257000 17044000 0 0 0 11490000 11067000 11323000 0 0 0 21701000 14698000 21312000 0 0 0 22890 1900 22175 426146;426147;426148;426149;426150;426151;426152;426153;426154;426155;426156;426157 261710;261711;261712;261713 261712 4 WADTYQK Unmodified 910.41848 0.418482 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 1 1 14.566 15.16 1;2 0.0019519 4637 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 120.9 116.07 2478000000 10513000 11316000 10102000 2282000 2230600 2509400 289090000 270330000 244980000 5439200 5890200 5039100 251930000 241610000 238840000 2936700 3686300 3219700 274140000 284110000 297310000 8149000 5786900 6527900 22891 994 22176 426158;426159;426160;426161;426162;426163;426164;426165;426166;426167;426168;426169;426170;426171;426172;426173;426174;426175;426176;426177;426178;426179;426180;426181;426182;426183;426184;426185;426186;426187;426188;426189;426190;426191 261714;261715;261716;261717;261718;261719;261720;261721;261722;261723;261724;261725;261726;261727 261727 12 WAEQGYK Unmodified 880.40792 0.40791731 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 13.628 14.504 2 0.11335 4593 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 51.456 45.696 168690000 18161000 16172000 14041000 168090 0 0 21034000 14404000 21151000 0 0 0 11183000 11451000 9326500 0 0 0 10535000 9391800 11673000 0 0 0 22892 880 22177 426192;426193;426194;426195;426196;426197;426198;426199;426200;426201;426202;426203;426204 261728 261728 1 WAEVVFR Unmodified 905.47594 0.4759373 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.154 32.715 2 0.0015703 12410 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 127.66 117.35 242580000 4403200 2980400 0 0 0 0 0 3470000 2397500 9764100 8533400 7496800 3578200 0 2121200 31567000 21997000 24843000 9163500 9454200 9676900 30717000 31537000 28884000 22893 1448 22178 426205;426206;426207;426208;426209;426210;426211;426212;426213;426214;426215;426216;426217;426218;426219;426220;426221;426222 261729;261730;261731;261732;261733;261734;261735;261736;261737 261737 9 WAGVPFYLR Unmodified 1107.5866 0.58655038 702 P0AC53 zwf Glucose-6-phosphate 1-dehydrogenase;Extracellular death factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 46.283 44.759 2 4.6109E-05 22376 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 150.02 141.25 251890000 20744000 24338000 24465000 0 0 0 26679000 26099000 27425000 0 0 0 0 20387000 0 0 0 0 28432000 27628000 25697000 0 0 0 22894 702 22179 426223;426224;426225;426226;426227;426228;426229;426230;426231;426232 261738;261739;261740;261741;261742;261743 261738 6 WAHTSVQDR Unmodified 1098.5207 0.52065566 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 11.411 12.122 2 9.7451E-05 3171 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 136.8 130.63 401970000 116230000 145920000 113480000 0 0 0 12378000 13947000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22895 1486 22180 426233;426234;426235;426236;426237 261744;261745;261746 261746 3 WAIAVGDQR Unmodified 1014.5247 0.52467841 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.936 27.667 2 0.002965 10351 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 83.265 77.606 213960000 16267000 15926000 13096000 1604300 1312400 1524100 14768000 18737000 14384000 0 11592000 7502900 0 0 11668000 3154100 2023500 2578500 19391000 21434000 22049000 4758100 4802500 5392200 22896 1451 22181 426238;426239;426240;426241;426242;426243;426244;426245;426246;426247;426248;426249;426250;426251;426252;426253;426254;426255;426256;426257;426258 261747;261748;261749 261747 3 WAIYPSVK Unmodified 962.52255 0.52255314 1290 P27129 rfaJ Lipopolysaccharide 1,2-glucosyltransferase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 33.669 32.212 2 0.01112 15309 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 77.282 68.51 38162000 0 0 0 0 0 0 0 5641700 6483700 0 0 0 4237000 4720500 3821900 0 0 0 7038100 6219500 0 0 0 0 22897 1290 22182 426259;426260;426261;426262;426263;426264;426265;426266;426267 261750;261751;261752 261751 3 WALALEDGK Unmodified 1001.5182 0.51819605 1344 P30748 moaD Molybdopterin synthase sulfur carrier subunit yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 34.802 33.357 2 0.0039101 16364 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 79.906 69.196 186280000 38086000 32206000 34557000 0 0 0 23165000 0 21606000 0 0 0 0 0 17322000 0 0 0 0 19339000 0 0 0 0 22898 1344 22183 426268;426269;426270;426271;426272;426273;426274 261753;261754;261755 261753 2 WALLKDEQSVHQIAAER Unmodified 1993.0381 0.038123426 1587 P46852 yhhW Quercetin 2,3-dioxygenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 28.832 27.28 4 4.8616E-09 9231 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 123.36 119.87 175880000 16475000 15239000 11081000 21078000 22971000 25828000 0 0 0 2285500 2215500 0 0 0 0 0 0 0 0 0 0 18992000 19162000 20556000 22899 1587 22184 426275;426276;426277;426278;426279;426280;426281;426282;426283;426284;426285 261756;261757;261758;261759;261760 261760 5 WANIVAK Unmodified 800.45447 0.45447358 413 P0A8A2 yeeN Probable transcriptional regulatory protein YeeN yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.646 21.047 2 0.02122 8716 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 75.915 71.698 2982500000 141270000 140010000 128710000 0 0 0 322900000 286690000 296640000 0 0 0 202400000 226810000 208280000 0 0 0 319890000 362920000 345950000 0 0 0 22900 413 22185 426286;426287;426288;426289;426290;426291;426292;426293;426294;426295;426296;426297 261761 261761 1 WAPLVVGR Unmodified 896.52322 0.52322184 1259 P25534 ubiH 2-octaprenyl-6-methoxyphenol hydroxylase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.406 31.741 2 0.0018669 15303 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.27 105.27 106130000 9942100 9942500 8431600 1552100 1618100 1597500 13713000 13083000 10416000 1753900 0 1896200 6946200 9234200 0 0 0 0 15240000 0 0 0 759080 0 22901 1259 22186 426298;426299;426300;426301;426302;426303;426304;426305;426306;426307;426308;426309;426310;426311;426312 261762;261763;261764;261765;261766;261767;261768 261764 7 WAPLWVIDFPMFEDDGEGGLTAMHHPFTSPK Unmodified 3527.6319 0.63186896 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 54.956 53.497 4 2.9557E-33 25260 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 197.89 197.82 3035900000 177460000 169390000 131840000 0 0 7301600 247490000 219200000 249530000 0 0 0 308380000 291850000 274750000 0 0 0 323040000 332230000 303450000 0 0 0 22902 1189 22187 426313;426314;426315;426316;426317;426318;426319;426320;426321;426322;426323;426324;426325 261769;261770;261771;261772;261773;261774;261775;261776;261777;261778;261779;261780 261780 12 WAQTNTPVR Unmodified 1071.5461 0.54614213 1979 Q57261 truD tRNA pseudouridine synthase D yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.945 15.735 2 0.00010549 5243 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.81 121.82 177270000 16914000 17867000 17173000 0 0 0 12691000 10730000 10969000 0 0 0 15556000 16482000 12913000 0 0 0 18413000 13196000 14365000 0 0 0 22903 1979 22188 426326;426327;426328;426329;426330;426331;426332;426333;426334;426335;426336;426337 261781 261781 1 WAVGCAK Unmodified 790.37959 0.37959407 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.465 16.272 2 0.067741 5510 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 59.795 53.441 1256000000 90709000 103000000 86894000 0 0 0 127180000 128490000 111060000 0 0 0 92248000 74771000 75834000 0 0 0 129500000 116630000 119650000 0 0 0 22904 58 22189 426338;426339;426340;426341;426342;426343;426344;426345;426346;426347;426348;426349 261782;261783;261784;261785;261786 261783 5 WCMPVELSR Unmodified 1176.542 0.54198473 1571 P45475 yhbV Uncharacterized protein YhbV yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 39.656 37.905 2 0.013666 17658 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 73.665 59.507 69970000 0 0 0 0 0 0 10443000 7865000 11578000 0 0 0 7517400 8148000 8379900 0 0 0 4604600 5855400 5578600 0 0 0 22905 1571 22190 426350;426351;426352;426353;426354;426355;426356;426357;426358 261787;261788 261787 2 WCYKPFEDLIQPAR Unmodified 1821.8872 0.88722543 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 2 2 2 2 2 2 2 2 2 43.738 42.23 2;3;4 2.7267E-08 20501 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 166.69 160.97 5232800000 1817400000 1547400000 1471900000 4235000 2717800 3367800 51399000 42799000 45391000 0 0 0 26508000 20058000 22179000 0 0 0 59552000 61847000 56081000 0 0 0 22906 1219 22191 426359;426360;426361;426362;426363;426364;426365;426366;426367;426368;426369;426370;426371;426372;426373;426374;426375;426376;426377;426378;426379;426380;426381;426382;426383;426384;426385;426386;426387;426388 261789;261790;261791;261792;261793;261794;261795;261796;261797;261798;261799;261800;261801;261802;261803;261804;261805 261799 17 WDAAQSLLATYIK Unmodified 1478.7769 0.77692993 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 52.338 51.092 2;3 9.5339E-09 25094 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 195.27 189.31 3111100000 284910000 275150000 291890000 0 1472800 1555800 285980000 259590000 292320000 0 0 0 197040000 222870000 216710000 0 0 0 257780000 254910000 268950000 0 0 0 22907 94 22192 426389;426390;426391;426392;426393;426394;426395;426396;426397;426398;426399;426400;426401;426402;426403;426404;426405;426406;426407;426408;426409;426410;426411;426412;426413;426414 261806;261807;261808;261809;261810;261811;261812;261813;261814;261815;261816;261817;261818;261819;261820;261821;261822;261823;261824;261825;261826;261827;261828;261829 261818 23 WDDEAIAK Unmodified 946.43961 0.43961137 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.2 20.386 2 0.01629 8244 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 68.787 55.828 3552000000 15210000 16240000 13483000 2031900 2102200 1974700 460620000 415310000 425700000 6840800 5901800 4543000 379600000 317140000 297200000 4946100 3395100 3771300 383130000 373750000 402640000 4804400 6488000 5188300 22908 994 22193 426415;426416;426417;426418;426419;426420;426421;426422;426423;426424;426425;426426;426427;426428;426429;426430;426431;426432;426433;426434;426435;426436;426437;426438 261830 261830 1 WDDWFADPIDLADAR Unmodified 1804.8057 0.80566387 523 P0A9H9 cheZ Protein phosphatase CheZ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 55.257 53.894 2 2.4889E-07 19840 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 156.69 154.78 125080000 36431000 29803000 32993000 9404000 8697900 7754100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22909 523 22194 426439;426440;426441;426442;426443;426444 261831;261832;261833 261832 3 WDEGQLLNTLK Unmodified 1315.6772 0.67721588 1232 P23930 lnt Apolipoprotein N-acyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 44.145 42.702 2 0.037255 20681 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 51.092 46.479 62681000 5496800 4583800 3227600 935490 0 0 0 6460700 0 0 0 0 6531500 6797700 5964400 0 0 0 7160300 7826800 7696000 0 0 0 22910 1232 22195 426445;426446;426447;426448;426449;426450;426451;426452;426453;426454;426455 261834 261834 1 WDEKWGYDYTGNADNNANFGK Unmodified 2464.0356 0.035616823 77 P02943 lamB Maltoporin yes yes 0 0 1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 35.144 33.948 3 0.06668 13012 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 34.346 34.345 10081000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 877830 813140 0 0 0 3190100 3073500 2126200 22911 77 22196 426456;426457;426458;426459;426460 261835 261835 1 WDELLRK Unmodified 958.52362 0.52361577 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 20.625 20.567 2 0.0079732 6311 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 95.793 85.882 2132400000 0 0 0 412010000 358690000 324960000 0 0 0 18782000 14013000 13852000 0 0 0 0 0 0 0 0 0 340330000 299010000 350740000 22912 939 22197 426461;426462;426463;426464;426465;426466;426467;426468;426469 261836;261837;261838;261839;261840;261841;261842 261838 7 WDEVGVDVVAEATGLFLTDETAR Unmodified 2492.2071 0.20709883 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 2 1 2 4 3 2 3 4 3 3 4 56.056 54.611 2;3 7.6706E-89 26708 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 320.56 306.89 2195200000 127500000 135900000 130110000 41207000 5009000 0 130140000 149730000 160290000 0 0 0 169770000 194650000 251780000 0 0 0 191980000 258940000 248210000 0 0 0 22913 504 22198 426470;426471;426472;426473;426474;426475;426476;426477;426478;426479;426480;426481;426482;426483;426484;426485;426486;426487;426488;426489;426490;426491;426492;426493;426494;426495;426496;426497;426498;426499;426500;426501;426502;426503;426504;426505;426506;426507;426508;426509;426510;426511 261843;261844;261845;261846;261847;261848;261849;261850;261851;261852;261853;261854;261855;261856;261857;261858;261859;261860;261861;261862;261863;261864;261865;261866;261867;261868;261869;261870;261871;261872;261873;261874;261875 261861 33 WDGMLASLDSK Unmodified 1221.57 0.56997362 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.342 38.677 2 8.0392E-05 18788 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 123.6 111.39 2736100000 328630000 284400000 321820000 0 0 0 215990000 210900000 235000000 0 0 0 190790000 188480000 161900000 0 0 0 198640000 204980000 194600000 0 0 0 22914 874 22199 426512;426513;426514;426515;426516;426517;426518;426519;426520;426521;426522;426523 261876;261877;261878;261879;261880;261881;261882;261883;261884;261885;261886 261880 10 WDLAIASHGIHMHAPEEGLR Unmodified 2239.0957 0.09565508 667 P0ABK9 nrfA Cytochrome c-552 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 33.924 32.44 5 0.030652 14831 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 39.905 38.478 45213000 0 0 0 0 0 0 6956400 6812700 0 0 0 0 8163400 9956600 7544000 0 0 0 0 0 5779600 0 0 0 22915 667 22200 426524;426525;426526;426527;426528;426529 261887 261887 1 WDLGDIIGAR Unmodified 1114.5771 0.57710791 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.862 51.561 2 3.9893E-06 25394 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 156.75 152.02 2938900000 247110000 281240000 216590000 0 0 1342200 419590000 425030000 424420000 2636600 0 2112100 156010000 144690000 138240000 0 0 935750 166140000 157530000 155340000 0 0 0 22916 449 22201 426530;426531;426532;426533;426534;426535;426536;426537;426538;426539;426540;426541;426542;426543;426544;426545 261888;261889;261890;261891;261892;261893;261894;261895;261896;261897;261898 261894 11 WDLGDILGAK Unmodified 1086.571 0.5709599 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.783 52.343 2 0.00042297 26022 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 104.06 92.102 2954500000 209230000 210490000 213400000 0 0 0 221600000 228550000 240930000 0 0 0 256480000 264800000 234040000 0 0 0 308460000 288960000 277570000 0 0 0 22917 448 22202 426546;426547;426548;426549;426550;426551;426552;426553;426554;426555;426556;426557 261899;261900;261901;261902;261903;261904;261905;261906;261907;261908;261909;261910 261899 12 WDLLDVMR Unmodified 1046.5219 0.52190122 103 P04995 sbcB Exodeoxyribonuclease I yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.128 52.688 2 0.0019749 25649 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 104.37 88.734 106710000 10990000 9874700 11774000 0 0 0 6507300 5476200 4505500 0 0 0 8443200 10717000 6660600 0 0 0 9103500 13204000 9456200 0 0 0 22918 103 22203 426558;426559;426560;426561;426562;426563;426564;426565;426566;426567;426568;426569 261911;261912;261913 261912 3 WDMQFAPSICQQCSIGCNISPGER Unmodified 2840.2139 0.21387401 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.367 47.068 3 6.1699E-10 23343 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 112.88 111.98 141540000 0 0 0 3840900 3629800 0 10691000 8660700 8916800 5318800 0 6477800 10582000 7589100 9544400 0 3373700 2017300 16359000 15691000 11134000 6060800 6196200 5455300 22919 1427 22204 426570;426571;426572;426573;426574;426575;426576;426577;426578;426579;426580;426581;426582;426583;426584;426585;426586;426587 261914;261915;261916;261917;261918;261919;261920;261921;261922;261923;261924;261925 261915 10 WDSLLPLPEPYVVPGGR Unmodified 1893.9989 0.99888437 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.751 53.303 2 3.7539E-06 26189 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.57 115.94 314340000 48270000 51334000 56576000 0 0 0 22735000 22007000 23829000 0 0 0 8695900 5762800 8694500 0 0 0 27880000 21905000 16652000 0 0 0 22920 1091 22205 426588;426589;426590;426591;426592;426593;426594;426595;426596;426597;426598;426599 261926;261927 261927 2 WDWQPEPVNEALNAR Unmodified 1823.8591 0.85909643 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 2 2 2 1 1 1 45.446 43.987 2;3 3.7726E-20 21716 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 211.37 210.81 3355300000 170630000 154590000 151260000 23790000 19784000 19642000 290490000 295360000 274590000 14068000 15210000 14411000 270670000 286280000 248380000 5139000 5177300 3094600 342680000 380630000 351310000 5396600 6555900 6192800 22921 107 22206 426600;426601;426602;426603;426604;426605;426606;426607;426608;426609;426610;426611;426612;426613;426614;426615;426616;426617;426618;426619;426620;426621;426622;426623;426624;426625;426626;426627;426628;426629;426630;426631;426632;426633;426634;426635;426636;426637;426638;426639;426640;426641;426642 261928;261929;261930;261931;261932;261933;261934;261935;261936;261937;261938;261939;261940;261941;261942;261943;261944;261945;261946;261947;261948;261949;261950;261951;261952;261953;261954;261955;261956;261957;261958;261959;261960 261934 32 WDYIFSYIK Unmodified 1233.607 0.60701105 195 P08997 aceB Malate synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.551 50.303 2 0.003435 23538 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 81.594 77.482 5136700000 1277400000 1168000000 1037600000 1017500 930780 890340 307960000 320440000 328270000 0 0 0 96369000 93054000 102780000 0 0 0 131440000 141620000 128910000 0 0 0 22922 195 22207 426643;426644;426645;426646;426647;426648;426649;426650;426651;426652;426653;426654;426655;426656;426657 261961;261962;261963;261964;261965;261966;261967;261968;261969;261970;261971;261972;261973 261972 13 WEAATEVTAMINK Unmodified 1462.7126 0.71261511 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 39.691 38.252 2 0.029265 18867 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 55.401 50.935 59290000 20446000 18868000 19976000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22923 1835 22208 426658;426659;426660 261974;261975;261976 261975 0 WEADACR Unmodified 906.3654 0.36540057 1728 P69228 baeR Transcriptional regulatory protein BaeR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 12.985 13.854 2 0.02186 4248 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 75.269 75.269 44111000 9891200 10877000 9385400 0 0 0 0 0 0 0 0 0 4640100 4160800 5156600 0 0 0 0 0 0 0 0 0 22924 1728 22209 426661;426662;426663;426664;426665;426666 261977;261978;261979 261977 3 WEAEFAGNK Unmodified 1050.4771 0.47705951 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 23.291 22.195 2 0.032605 7642 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 59.245 57.462 30480000 0 0 0 0 0 0 0 0 8486600 4203700 6011600 4397900 0 0 0 0 0 0 0 0 0 3651900 3728600 0 22925 75 22210 426667;426668;426669;426670;426671;426672 261980;261981;261982;261983;261984 261982 5 WEAEFAGNKAESDTAQQK Unmodified 2008.9126 0.91264814 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1 2 2 1 19.449 19.376 2;3 4.1089E-06 5953 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 102.87 97.488 163420000 0 0 0 0 0 0 0 0 0 32156000 23281000 27854000 0 0 0 7639900 4984100 5287500 0 0 0 21461000 22382000 18378000 22926 75 22211 426673;426674;426675;426676;426677;426678;426679;426680;426681;426682;426683;426684;426685;426686 261985;261986;261987;261988;261989;261990;261991;261992;261993;261994;261995 261993 11 WEEIACR Unmodified 962.428 0.42800083 1941 P77775 yfcH Epimerase family protein YfcH yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.656 19.913 2 0.0058004 7598 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 98.133 77.851 62349000 0 11808000 10648000 3135200 2616100 3560000 0 0 6640700 4858200 5100200 4497500 2758900 0 3679700 0 0 0 0 0 0 1201200 863240 982040 22927 1941 22212 426687;426688;426689;426690;426691;426692;426693;426694;426695;426696;426697;426698;426699;426700 261996;261997;261998 261997 2 WEGEPWGK Unmodified 987.44503 0.4450311 185 P08337 mutT 8-oxo-dGTP diphosphatase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.006 25.859 2 0.16121 11297 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 40.268 39.059 72025000 3003300 2860400 2962500 0 0 0 5527300 5470200 5172200 0 0 0 8163600 7648300 4806700 0 0 0 10075000 6980300 9354400 0 0 0 22928 185 22213 426701;426702;426703;426704;426705;426706;426707;426708;426709;426710;426711;426712 261999 261999 1 WEGITRPYSAEDVVK Unmodified 1748.8733 0.87334951 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 2 2 1 2 2 2 2 2 2 29.691 28.346 2;3 5.3549E-27 13097 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 239.87 206.46 22585000000 5593900000 5855900000 5016700000 16826000 16238000 17149000 1028600000 1003200000 944500000 0 0 1759100 343490000 358180000 356430000 0 0 0 678950000 694060000 659040000 0 0 0 22929 517 22214 426713;426714;426715;426716;426717;426718;426719;426720;426721;426722;426723;426724;426725;426726;426727;426728;426729;426730;426731;426732;426733;426734;426735;426736;426737;426738;426739;426740;426741;426742;426743;426744;426745;426746;426747 262000;262001;262002;262003;262004;262005;262006;262007;262008;262009;262010;262011;262012;262013;262014;262015;262016;262017;262018;262019;262020;262021;262022;262023;262024;262025;262026;262027;262028;262029 262011 30 WEHNQDAMAVEK Unmodified 1456.6405 0.6405128 401 P0A867 talA Transaldolase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 14.071 14.912 2;3 6.3808E-31 4818 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 262.56 211.11 2213200000 339890000 320590000 294830000 0 0 0 294220000 294790000 225730000 0 0 0 73114000 67314000 51746000 0 0 0 83556000 89975000 77490000 0 0 0 22930 401 22215 426748;426749;426750;426751;426752;426753;426754;426755;426756;426757;426758;426759;426760;426761;426762;426763;426764;426765;426766;426767;426768;426769;426770;426771 262030;262031;262032;262033;262034;262035;262036;262037;262038;262039 262035 10 WEILDGGK Unmodified 916.46543 0.46543219 1961 Q46863 ygiS Probable deoxycholate-binding periplasmic protein YgiS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 32.021 30.669 2 0.043206 14862 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 65.313 49.873 127840000 0 6584900 0 0 0 0 24802000 17445000 0 0 0 0 12840000 15338000 12421000 0 0 0 13890000 12697000 11826000 0 0 0 22931 1961 22216 426772;426773;426774;426775;426776;426777;426778;426779;426780 262040;262041;262042;262043 262040 0 WEIPHQEIQNATK Unmodified 1592.7947 0.79470526 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 1 2 1 2 1 26.105 24.867 2;3 1.3407E-06 11057 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.3 124.82 274030000 9545900 8490600 0 2053000 2617100 1893800 17575000 15344000 13580000 13046000 13128000 12396000 21216000 17479000 19684000 0 0 0 28644000 26415000 28950000 6880600 8036500 7056400 22932 1781 22217 426781;426782;426783;426784;426785;426786;426787;426788;426789;426790;426791;426792;426793;426794;426795;426796;426797;426798;426799;426800;426801;426802;426803;426804;426805;426806;426807;426808 262044;262045;262046;262047;262048;262049;262050;262051;262052;262053;262054;262055;262056;262057 262052 14 WELLQQVDTSTR Unmodified 1474.7416 0.74160705 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1 1 1 2 2 2 40.058 38.399 2 2.3907E-23 15003 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 236.35 218.45 732850000 0 0 0 29452000 37553000 32716000 0 0 0 2952800 2815500 3923600 0 0 0 42365000 34401000 37231000 0 0 0 144500000 163780000 201170000 + 22933 11 22218 426809;426810;426811;426812;426813;426814;426815;426816;426817;426818;426819;426820;426821;426822;426823;426824 262058;262059;262060;262061;262062;262063;262064;262065;262066;262067 262064 10 WELTIPQELAYGER Unmodified 1703.8519 0.85188578 533 P0A9L3 fklB FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 2 2 1 1 1 50.815 49.564 2;3 1.8965E-19 23197 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 206.11 200.27 4856000000 355180000 420110000 350010000 6551200 5771500 6066400 320300000 362370000 340930000 10525000 9444300 6193100 348670000 350920000 344100000 3067400 3057000 0 541050000 563570000 499830000 4160400 4152600 0 22934 533 22219 426825;426826;426827;426828;426829;426830;426831;426832;426833;426834;426835;426836;426837;426838;426839;426840;426841;426842;426843;426844;426845;426846;426847;426848;426849;426850;426851;426852;426853;426854;426855;426856 262068;262069;262070;262071;262072;262073;262074;262075;262076;262077;262078;262079;262080;262081;262082;262083;262084;262085;262086 262085 19 WEPATWPTECR Unmodified 1431.6241 0.62413446 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 35.036 33.158 2 4.5391E-06 16218 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.05 153.05 179070000 0 0 0 0 0 0 54179000 54200000 53819000 2013700 2044200 1342700 4950100 3685500 2836300 0 0 0 0 0 0 0 0 0 22935 722 22220 426857;426858;426859;426860;426861;426862;426863;426864;426865 262087;262088;262089 262087 3 WEPEFTITGQAWDLPVVGYR Unmodified 2363.1586 0.15863249 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.07 53.686 2 8.5293E-10 21840 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 141.46 129.08 361670000 0 33829000 39491000 0 0 0 28135000 23137000 31945000 9198700 9755200 0 22038000 25230000 22117000 4254500 0 0 34500000 41269000 36770000 0 0 0 22936 30 22221 426866;426867;426868;426869;426870;426871;426872;426873;426874;426875;426876;426877;426878;426879 262090;262091 262091 2 WEPGMAEEETR Unmodified 1333.5609 0.5608655 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.88 22.329 2 0.0028509 9192 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 67.334 64.936 99304000 10499000 8693500 10947000 0 0 0 7150900 9387500 8981300 0 0 0 6780400 7599300 0 0 0 0 9052100 9865100 10348000 0 0 0 22937 1144 22222 426880;426881;426882;426883;426884;426885;426886;426887;426888;426889;426890;426891 262092;262093;262094;262095;262096;262097;262098;262099;262100;262101;262102 262100 9 WEQYGPELLR Unmodified 1289.6404 0.64043645 1120 P16659 proS Proline--tRNA ligase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.763 36.089 2 9.5918E-09 17425 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 183.65 160.22 3062100000 223460000 214290000 229120000 0 0 0 242620000 250910000 243890000 0 0 0 248660000 227050000 226540000 0 0 0 308600000 336950000 309950000 0 0 0 22938 1120 22223 426892;426893;426894;426895;426896;426897;426898;426899;426900;426901;426902;426903 262103;262104;262105;262106;262107;262108;262109;262110;262111;262112 262107 8 WESHIYAGYTVPPYYDSMIGK Unmodified 2476.1409 0.14093352 1236 P24182 accC Biotin carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.051 43.352 3 6.5993E-08 20345 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 110.77 102.17 735670000 42329000 32750000 35124000 1967300 2898800 0 77998000 62727000 59867000 2130900 1995100 2160000 62494000 47788000 59184000 0 0 0 68005000 86688000 79250000 4809500 2449800 3054400 22939 1236 22224 426904;426905;426906;426907;426908;426909;426910;426911;426912;426913;426914;426915;426916;426917;426918;426919;426920;426921;426922;426923 262113;262114;262115;262116;262117;262118;262119;262120;262121;262122;262123;262124;262125;262126;262127;262128 262127 16 WEVSEDGK Unmodified 948.41888 0.41887593 1219 P23847 dppA Periplasmic dipeptide transport protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.535 17.292 2 0.0027006 6001 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 98.299 98.299 2750000000 917270000 802550000 826060000 0 0 0 25393000 23793000 21392000 0 0 0 13780000 11982000 10234000 0 0 0 30058000 33586000 33916000 0 0 0 22940 1219 22225 426924;426925;426926;426927;426928;426929;426930;426931;426932;426933;426934;426935 262129;262130 262130 1 WEYGSPR Unmodified 893.40317 0.40316629 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.894 18.324 2 0.0046288 5635 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 103.02 98.193 175290000 0 5088300 0 2422500 0 3556200 14828000 17409000 18498000 9288200 6609100 6617500 0 12128000 10760000 0 0 0 17668000 15917000 17738000 6699200 4675600 5392500 22941 1365 22226 426936;426937;426938;426939;426940;426941;426942;426943;426944;426945;426946;426947;426948;426949;426950;426951;426952 262131;262132;262133;262134;262135;262136 262131 6 WEYLEALK Unmodified 1050.5386 0.53859714 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.626 37.952 2 0.15701 18453 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 54.611 36.763 280070000 17021000 16816000 12079000 0 0 0 26971000 22998000 28062000 0 0 0 21975000 17966000 21855000 0 0 0 32527000 29201000 32600000 0 0 0 22942 1564 22227 426953;426954;426955;426956;426957;426958;426959;426960;426961;426962;426963;426964 262137 262137 0 WEYNVQEGK Unmodified 1151.5247 0.52473799 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.387 21.74 2 0.00087676 8916 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 89.698 72.467 98154000 12856000 0 12106000 0 0 162010 10739000 0 0 0 0 0 8978500 7481000 11383000 0 0 0 11319000 13407000 9721400 0 0 0 22943 1856 22228 426965;426966;426967;426968;426969;426970;426971;426972;426973;426974;426975;426976 262138;262139;262140;262141;262142 262140 5 WEYNVQEGKEDDVGNIVHK Unmodified 2258.0604 0.060375011 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 2 2 2 1 26.404 25.34 3;4 3.3591E-14 11482 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.67 104.63 812170000 79307000 59679000 60860000 0 757640 0 24207000 15959000 20282000 1138100 984750 1445600 81222000 82038000 76285000 0 912820 976120 105500000 82453000 113760000 0 3226000 1170700 22944 1856 22229 426977;426978;426979;426980;426981;426982;426983;426984;426985;426986;426987;426988;426989;426990;426991;426992;426993;426994;426995;426996;426997;426998;426999;427000;427001;427002;427003;427004;427005;427006 262143;262144;262145;262146;262147;262148;262149;262150;262151;262152;262153;262154;262155;262156;262157 262144 15 WFDSQALMLR Unmodified 1265.6227 0.62267789 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 0 By MS/MS By matching 1 1 46.735 45.333 2 0.064406 16205 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 58.676 49.462 12512000 0 0 0 6029000 0 6483000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22945 235 22230 427007;427008 262158 262158 0 WFGADVTK Unmodified 922.45487 0.45486751 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 28.704 27.45 1;2 0.0069108 12664 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.03 84.407 3649700000 457800000 444120000 347180000 0 0 413460 359990000 359670000 348900000 0 0 0 195760000 196900000 217860000 0 0 0 261710000 228680000 230660000 0 0 0 22946 874 22231 427009;427010;427011;427012;427013;427014;427015;427016;427017;427018;427019;427020;427021;427022;427023;427024;427025;427026;427027;427028;427029;427030;427031;427032;427033 262159;262160;262161;262162;262163;262164;262165;262166;262167;262168;262169;262170 262165 10 WFGTEPK Unmodified 863.41775 0.41775372 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 1 1 2 2 2 2 2 1 21.991 22.061 1;2 0.020311 8919 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.833 76.833 1801100000 414170000 357070000 346100000 520140 0 0 49674000 44712000 41052000 0 0 0 114340000 119520000 107370000 0 0 0 79445000 65122000 61953000 0 0 0 22947 877 22232 427034;427035;427036;427037;427038;427039;427040;427041;427042;427043;427044;427045;427046;427047;427048;427049;427050;427051;427052;427053;427054;427055 262171;262172;262173;262174;262175;262176;262177;262178 262173 7 WFGYGETLPEK Unmodified 1325.6292 0.62920306 923 P0AFA7 nhaB Na(+)/H(+) antiporter NhaB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 38.645 36.923 2 0.034165 17903 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 52.49 52.49 158970000 9580000 7669800 10622000 0 0 0 13687000 14719000 12562000 0 0 2268400 11223000 9808300 13707000 0 0 0 19734000 16792000 16596000 0 0 0 22948 923 22233 427056;427057;427058;427059;427060;427061;427062;427063;427064;427065;427066;427067;427068 262179;262180;262181;262182 262181 4 WFILQATSPAANVLETVR Unmodified 2015.084 0.084010986 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.593 53.145 2;3 2.0213E-67 26405 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 308.74 303.59 1968100000 237670000 225240000 216230000 0 0 0 145750000 134380000 125350000 0 0 0 143230000 141410000 123120000 0 0 0 158420000 164890000 152400000 0 0 0 22949 94 22234 427069;427070;427071;427072;427073;427074;427075;427076;427077;427078;427079;427080;427081;427082;427083;427084;427085;427086;427087;427088;427089;427090;427091;427092 262183;262184;262185;262186;262187;262188;262189;262190;262191;262192;262193;262194 262183 12 WFLVQIEELVR Unmodified 1430.7922 0.79218606 65 P00968 carB Carbamoyl-phosphate synthase large chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.16 53.738 2 0.02234 25366 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 59.908 32.86 787130000 181200000 144500000 165000000 0 0 0 0 0 0 0 0 0 22711000 17544000 19754000 0 0 0 78857000 82838000 63551000 5595400 2677400 2908200 22950 65 22235 427093;427094;427095;427096;427097;427098;427099;427100;427101;427102;427103;427104 262195 262195 0 WFNTNYHYMVPEFVK Unmodified 1973.9134 0.91344018 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 1 1 2 1 1 1 1 45.271 43.704 2;3 4.3549E-36 21599 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 267.23 262.34 1353400000 66904000 56983000 58958000 0 0 0 363420000 326140000 341230000 1229700 2241000 1635500 17157000 18966000 14094000 0 0 0 28876000 30472000 25068000 0 0 0 22951 1265 22236 427105;427106;427107;427108;427109;427110;427111;427112;427113;427114;427115;427116;427117;427118;427119;427120;427121;427122;427123;427124;427125;427126 262196;262197;262198;262199;262200;262201;262202;262203;262204;262205;262206;262207;262208;262209 262200 14 WGAASSEDLLAVIGR Unmodified 1543.7995 0.79945628 1685 P64554 queE 7-carboxy-7-deazaguanine synthase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 52.567 51.315 2 7.2396E-24 24851 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 175.15 163.99 152130000 16407000 13559000 11484000 0 0 0 17520000 17509000 0 0 0 0 15179000 0 14343000 0 0 0 23195000 22939000 0 0 0 0 22952 1685 22237 427127;427128;427129;427130;427131;427132;427133;427134;427135;427136;427137 262210;262211;262212;262213;262214;262215;262216 262214 7 WGASDVHFVR Unmodified 1172.5727 0.57269123 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.43 25.291 3 0.000196 11600 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 90.108 85.642 949530000 102940000 87801000 82079000 0 0 0 87601000 75375000 81856000 0 338710 0 63447000 61037000 62306000 0 0 0 81336000 82930000 80483000 0 0 0 22953 62 22238 427138;427139;427140;427141;427142;427143;427144;427145;427146;427147;427148;427149;427150 262217;262218;262219;262220;262221;262222 262219 6 WGASDVHFVRPVHTVTLLLGDK Unmodified 2446.3121 0.31211344 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 2 3 3 3 3 2 3 3 3 3 1 1 1 3 3 3 3 3 3 39.915 38.152 3;4;5 4.6159E-28 17846 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 184.62 181.42 4468000000 356200000 370190000 335290000 5158400 12623000 5873600 413340000 375450000 400850000 34718000 24219000 34793000 282570000 196270000 251770000 8440500 2448300 6095000 462850000 454000000 379080000 17416000 20327000 18000000 22954 62 22239 427151;427152;427153;427154;427155;427156;427157;427158;427159;427160;427161;427162;427163;427164;427165;427166;427167;427168;427169;427170;427171;427172;427173;427174;427175;427176;427177;427178;427179;427180;427181;427182;427183;427184;427185;427186;427187;427188;427189;427190;427191;427192;427193;427194;427195;427196;427197;427198;427199;427200;427201;427202;427203;427204;427205;427206;427207;427208;427209;427210;427211;427212;427213;427214 262223;262224;262225;262226;262227;262228;262229;262230;262231;262232;262233;262234;262235;262236;262237;262238;262239;262240;262241;262242;262243;262244;262245;262246;262247;262248;262249;262250;262251;262252;262253;262254;262255;262256;262257;262258;262259;262260;262261;262262;262263;262264;262265;262266 262260 44 WGEALIQVSQPR Unmodified 1382.7306 0.73064844 1390 P32157 yiiM Protein YiiM yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.571 36.872 2 0.027769 17937 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 56.548 55.048 369100000 41562000 40411000 43295000 0 1028700 797130 48370000 42038000 37735000 0 0 0 18590000 0 20751000 0 0 0 28933000 23556000 22028000 0 0 0 22955 1390 22240 427215;427216;427217;427218;427219;427220;427221;427222;427223;427224;427225;427226;427227 262267;262268;262269;262270;262271 262269 0 WGFAVVENSLWQGVPNYLR Unmodified 2234.1273 0.12727278 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 55.14 53.679 2 1.8169E-29 26671 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 216.83 208.78 280220000 57368000 44041000 34716000 0 0 0 0 21790000 14896000 0 0 0 13132000 13469000 14342000 0 0 0 23233000 21653000 21584000 0 0 0 22956 43 22241 427228;427229;427230;427231;427232;427233;427234;427235;427236;427237;427238 262272;262273;262274;262275 262272 4 WGHAGSDSTHMEDFHNPDGTMR Unmodified 2483.9971 0.9971396 1947 P78067 ynjE Thiosulfate sulfurtransferase YnjE yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 18.821 19.385 4;5 4.5808E-05 7538 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 84.107 84.107 1035400000 8223800 6837700 12942000 0 0 0 114420000 118380000 111960000 0 0 0 161140000 140810000 115760000 0 0 0 85777000 71298000 87854000 0 0 0 22957 1947 22242 427239;427240;427241;427242;427243;427244;427245;427246;427247;427248;427249;427250;427251;427252;427253;427254;427255;427256;427257;427258;427259;427260 262276;262277;262278;262279;262280;262281;262282 262277 7 WGHSAIVNTSGNGDCHIILR Unmodified 2206.0702 0.070168611 639 P0AB91 aroG Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.555 24.386 3;4 7.7263E-15 10743 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.24 139.85 130420000 22277000 17377000 18581000 3785700 3280500 3128600 5532200 11193000 7209800 0 1699200 1575400 5448200 4469000 4792600 0 0 0 7035900 7538300 5495500 0 0 0 22958 639 22243 427261;427262;427263;427264;427265;427266;427267;427268;427269;427270;427271;427272;427273;427274;427275;427276;427277 262283;262284;262285;262286;262287;262288 262285 6 WGIDHTFECIGNVNVMR Unmodified 2046.9404 0.94039999 1253 P25437 frmA S-(hydroxymethyl)glutathione dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 44.625 43.021 2;3 0.046509 20925 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 51.013 51.013 1400300000 126360000 141170000 107880000 0 0 1164800 131020000 120550000 125610000 1918900 1671400 1443000 111540000 88852000 81456000 0 0 0 126420000 122610000 110650000 0 0 0 22959 1253 22244 427278;427279;427280;427281;427282;427283;427284;427285;427286;427287;427288;427289;427290;427291;427292;427293;427294;427295;427296;427297;427298;427299;427300;427301;427302;427303;427304;427305 262289;262290 262290 0 WGIHSTYSDNLLMLTLGR Unmodified 2076.0462 0.046245271 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1 1 2 2 2 2 52.122 50.752 2;3 7.8444E-29 20128 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 244.46 230.78 579900000 0 0 0 0 0 0 6709000 0 0 29430000 39850000 34948000 33733000 35519000 0 0 0 0 0 60837000 58817000 114510000 76961000 88588000 22960 205 22245 427306;427307;427308;427309;427310;427311;427312;427313;427314;427315;427316;427317;427318;427319;427320;427321;427322 262291;262292;262293;262294;262295;262296;262297;262298;262299;262300;262301;262302 262298 11 WGLPVSDR Unmodified 928.47667 0.47666558 1102 P15042 ligA DNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.258 29.902 2 0.0034989 13923 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 91.626 87.773 271560000 17658000 20295000 16224000 0 0 0 27617000 25338000 28790000 0 0 0 17705000 21803000 15669000 0 0 0 26826000 25616000 28020000 0 0 0 22961 1102 22246 427323;427324;427325;427326;427327;427328;427329;427330;427331;427332;427333;427334 262303;262304;262305;262306;262307;262308;262309;262310;262311;262312;262313;262314 262308 12 WGTLVNTLCSFK Unmodified 1424.7122 0.71222118 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 45.9 44.321 2 0.00014823 22148 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 87.568 82.352 79064000 0 0 0 0 0 0 18891000 21586000 17378000 0 0 0 5675000 5623900 6859400 0 0 0 0 0 0 0 0 3049900 22962 1318 22247 427335;427336;427337;427338;427339;427340;427341 262315;262316;262317 262315 2 WGVDCICTDAIDVIGPNFTAQ Unmodified 2351.0562 0.05621761 1065 P10908 ugpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 55.756 54.261 2 0.00026675 26793 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 70.373 69.807 122280000 0 0 0 0 0 0 6502600 5945400 7012000 0 0 0 12739000 11128000 13876000 0 0 0 21403000 22921000 20758000 0 0 0 22963 1065 22248 427342;427343;427344;427345;427346;427347;427348;427349;427350 262318 262318 1 WGWLDQVNQ Unmodified 1144.5302 0.53015772 636 P0AB80 ilvE Branched-chain-amino-acid aminotransferase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.608 52.168 2 0.12157 25653 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 44.767 41.02 93929000 15779000 12488000 14633000 0 0 0 6893900 6624200 6202100 0 0 0 5473400 4570000 4314000 0 0 0 6191600 5261900 5497600 0 0 0 22964 636 22249 427351;427352;427353;427354;427355;427356;427357;427358;427359;427360;427361;427362 262319 262319 0 WGYDYTGNADNNANFGK Unmodified 1905.7918 0.79180472 77 P02943 lamB Maltoporin yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 33.689 31.523 2 2.3112E-10 12451 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 140.24 139.55 20776000 0 0 0 0 0 0 0 0 0 2909500 3718900 3951200 0 0 0 0 0 0 0 0 0 3392300 3265200 3539200 22965 77 22250 427363;427364;427365;427366;427367;427368 262320;262321;262322;262323 262320 4 WHAESEQYYLHLFAPEQADLNWENPAVR Unmodified 3412.5901 0.5901388 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 50.421 48.981 3;4 5.0108E-53 22983 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 229.71 229.06 6360800000 0 9264200 0 2793300 0 0 537290000 581310000 617170000 2504000 3393000 3486700 676420000 711240000 684280000 0 0 0 863150000 847800000 810120000 5735600 4872500 0 22966 1324 22251 427369;427370;427371;427372;427373;427374;427375;427376;427377;427378;427379;427380;427381;427382;427383;427384;427385;427386;427387;427388;427389;427390;427391;427392;427393 262324;262325;262326;262327;262328;262329;262330;262331;262332;262333;262334;262335;262336;262337;262338;262339;262340;262341 262339 18 WHCLEENEAMQDVDDFELR Unmodified 2435.0158 0.015809358 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 1 1 1 2 1 2 42.822 41.158 2;3 3.2633E-29 20011 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 256.77 256.77 623050000 106430000 82754000 82340000 0 0 0 49744000 50224000 36469000 0 0 0 29481000 24665000 27738000 0 0 0 45135000 39926000 48144000 0 0 0 22967 1233 22252 427394;427395;427396;427397;427398;427399;427400;427401;427402;427403;427404;427405;427406;427407;427408;427409;427410;427411;427412 262342;262343;262344;262345;262346;262347;262348;262349;262350;262351;262352;262353;262354 262351 13 WHLDSGLVVIPK Unmodified 1362.766 0.76597131 1960 Q46857 dkgA 2,5-diketo-D-gluconic acid reductase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 1 1 2 2 2 2 2 2 2 2 2 40.337 38.669 2;3 4.9713E-05 18851 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 91.855 88.904 1857200000 326470000 299400000 256860000 484520 0 394440 243100000 214830000 219430000 0 0 0 36362000 39598000 35609000 0 0 0 63635000 60925000 60099000 0 0 0 22968 1960 22253 427413;427414;427415;427416;427417;427418;427419;427420;427421;427422;427423;427424;427425;427426;427427;427428;427429;427430;427431;427432;427433;427434;427435;427436;427437;427438 262355;262356;262357;262358;262359;262360;262361;262362;262363;262364;262365;262366;262367 262361 13 WHQSATVDEETYR Unmodified 1620.7168 0.71684887 1814 P76097 ydcJ Uncharacterized protein YdcJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 15.58 16.317 2;3 2.2435E-05 5651 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 125.22 123.46 35815000 9273400 12621000 10912000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1406500 0 1601900 0 0 0 22969 1814 22254 427439;427440;427441;427442;427443;427444;427445;427446 262368;262369;262370;262371;262372 262368 4 WHYDPELK Unmodified 1086.5134 0.51344502 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.225 21.273 2 0.086606 8086 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 53.554 46.73 40217000 3911000 4662000 3174000 1398400 1659800 1029000 6448000 2944000 0 1756600 1509500 1465800 0 0 0 0 0 0 3493800 2935800 3829500 0 0 0 22970 1115 22255 427447;427448;427449;427450;427451;427452;427453;427454;427455;427456;427457;427458;427459;427460;427461 262373;262374 262374 1 WIGIGDYTIR Unmodified 1192.6241 0.6240581 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.501 42.986 2 1.8425E-05 20985 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 150.24 144.14 853760000 94346000 92337000 74097000 0 0 0 77187000 73630000 76651000 0 0 0 63252000 53125000 46920000 0 0 0 68359000 69815000 64043000 0 0 0 22971 148 22256 427462;427463;427464;427465;427466;427467;427468;427469;427470;427471;427472;427473 262375;262376;262377;262378;262379;262380;262381;262382;262383;262384;262385;262386 262378 12 WILAEFNQTIK Unmodified 1361.7343 0.73433683 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.247 45.852 2 0.00010304 22251 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 143.7 139.69 1409200000 105810000 95153000 84153000 511440 774250 0 113000000 108500000 122490000 0 0 0 111300000 101950000 95562000 0 0 0 160560000 159120000 150310000 0 0 0 22972 158 22257 427474;427475;427476;427477;427478;427479;427480;427481;427482;427483;427484;427485;427486;427487 262387;262388;262389;262390 262390 4 WILDHVEGSR Unmodified 1210.6095 0.60947067 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1 2 2 2 2 2 1 2 2 2 1 2 1 2 2 2 2 2 1 28.075 26.825 2;3 0.00017029 12568 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.24 98.055 15456000000 352020000 318690000 169270000 1874400 1528200 1965000 1638700000 1671600000 1693000000 6914200 6973400 5013300 1699700000 1429600000 1417300000 6489500 10569000 8762100 1745500000 1684600000 1560500000 8582200 9548100 7303300 22973 239 22258 427488;427489;427490;427491;427492;427493;427494;427495;427496;427497;427498;427499;427500;427501;427502;427503;427504;427505;427506;427507;427508;427509;427510;427511;427512;427513;427514;427515;427516;427517;427518;427519;427520;427521;427522;427523;427524;427525;427526;427527 262391;262392;262393;262394;262395;262396;262397;262398;262399;262400;262401;262402;262403;262404;262405;262406;262407;262408;262409;262410;262411;262412;262413;262414;262415;262416;262417;262418;262419;262420;262421;262422 262399 31 WIMQDDR Unmodified 962.428 0.42800083 229 P0A6C1 nfo Endonuclease 4 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.269 22.548 2 0.071456 9231 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 68.915 59.674 79485000 8899200 6880800 6440500 0 0 0 6091900 6022200 6628000 0 0 0 5166700 4765400 6577500 0 0 0 7086900 8358400 6567500 0 0 0 22974 229 22259 427528;427529;427530;427531;427532;427533;427534;427535;427536;427537;427538;427539 262423;262424;262425;262426;262427 262427 3 WINDGAHIYVCGDANR Unmodified 1859.8373 0.83731513 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 28.053 26.872 3 2.2872E-05 12300 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 86.378 86.099 773380000 86447000 79036000 80301000 0 0 0 66762000 69329000 71650000 0 0 0 34638000 36782000 39790000 0 0 0 67877000 70044000 67063000 0 3663200 0 22975 1503 22260 427540;427541;427542;427543;427544;427545;427546;427547;427548;427549;427550;427551;427552 262428;262429;262430;262431;262432;262433;262434;262435;262436;262437;262438;262439 262434 12 WINPPFEPTIR Unmodified 1368.719 0.71902112 849 P0AED7 dapE Succinyl-diaminopimelate desuccinylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.457 42.942 2 2.032E-05 20190 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 161.79 157.9 254070000 17621000 20127000 12853000 0 0 0 20729000 22356000 23987000 0 0 0 18549000 16589000 14404000 0 0 0 30304000 31746000 24808000 0 0 0 22976 849 22261 427553;427554;427555;427556;427557;427558;427559;427560;427561;427562;427563;427564 262440;262441;262442;262443;262444;262445;262446 262444 7 WISDTESELGLGTVVAVDAR Unmodified 2117.0641 0.064063405 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 4 6 8 10 12 11 1 2 3 6 8 52.935 52.165 2;3 3.2463E-46 19059 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 342.97 320.65 1703200000 0 5010100 0 0 0 0 3645000 0 0 183160000 294200000 324150000 0 0 0 189420000 198510000 164770000 1125400 0 3980400 105040000 123480000 106730000 22977 1616 22262 427565;427566;427567;427568;427569;427570;427571;427572;427573;427574;427575;427576;427577;427578;427579;427580;427581;427582;427583;427584;427585;427586;427587;427588;427589;427590;427591;427592;427593;427594;427595;427596;427597;427598;427599;427600;427601;427602;427603;427604;427605;427606;427607;427608;427609;427610;427611;427612;427613;427614;427615;427616;427617;427618;427619;427620;427621;427622;427623;427624;427625;427626;427627;427628;427629;427630;427631;427632;427633;427634;427635;427636;427637 262447;262448;262449;262450;262451;262452;262453;262454;262455;262456;262457;262458;262459;262460;262461;262462;262463;262464;262465;262466;262467;262468;262469;262470;262471;262472;262473;262474;262475;262476;262477;262478;262479;262480;262481;262482;262483;262484;262485;262486;262487;262488;262489;262490;262491;262492;262493;262494;262495;262496;262497;262498;262499;262500;262501;262502;262503;262504;262505;262506;262507;262508;262509;262510;262511;262512;262513;262514;262515;262516;262517;262518;262519;262520;262521;262522;262523;262524 262471 74 WIVEAAR Unmodified 843.46029 0.46028724 67 P02359 rpsG 30S ribosomal protein S7 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1 1 1 2 2 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 25.14 24.2 2 0.0023081 7215 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 114.59 97.881 5218500000 835870000 700560000 661230000 20611000 20033000 18692000 278840000 280320000 290160000 5702000 50767000 48799000 269930000 6207900 229700000 20345000 14594000 18374000 450880000 495130000 409050000 31797000 30497000 30394000 22978 67 22263 427638;427639;427640;427641;427642;427643;427644;427645;427646;427647;427648;427649;427650;427651;427652;427653;427654;427655;427656;427657;427658;427659;427660;427661;427662;427663;427664;427665;427666;427667;427668;427669;427670;427671;427672;427673 262525;262526;262527;262528;262529;262530;262531;262532;262533;262534;262535;262536;262537;262538;262539;262540;262541;262542;262543;262544;262545;262546;262547;262548 262527 24 WKDEYLDQGNQTQP Unmodified 1720.7693 0.76927837 563 P0A9W9 yrdA Protein YrdA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.703 25.58 2 8.8299E-11 11627 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.65 163.71 177160000 15975000 14697000 13527000 0 0 0 16433000 18276000 16672000 0 0 0 12370000 14090000 11649000 0 0 0 17221000 13726000 12518000 0 0 0 22979 563 22264 427674;427675;427676;427677;427678;427679;427680;427681;427682;427683;427684;427685 262549;262550;262551;262552;262553;262554;262555;262556;262557;262558;262559;262560 262555 12 WKEGEATLAPSLDLVGK Unmodified 1812.9622 0.96216452 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 1 38.138 36.402 2;3 1.6469E-18 16878 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 223.26 214.15 10171000000 1072500000 887130000 861070000 3652400 2810900 4310900 892070000 1035900000 954240000 5397400 1971100 3737200 569160000 512140000 560210000 0 0 3364300 968320000 896540000 927950000 3463900 2812800 2096800 22980 827 22265 427686;427687;427688;427689;427690;427691;427692;427693;427694;427695;427696;427697;427698;427699;427700;427701;427702;427703;427704;427705;427706;427707;427708;427709;427710;427711;427712;427713;427714;427715;427716;427717;427718;427719 262561;262562;262563;262564;262565;262566;262567;262568;262569;262570;262571;262572;262573;262574;262575;262576;262577;262578;262579;262580;262581;262582;262583;262584;262585;262586;262587 262585 27 WKEGEATLAPSLDLVGKI Unmodified 1926.0462 0.046228496 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 2 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.115 44.591 3 9.4246E-05 15913 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 74.793 71.073 305540000 21306000 28366000 20923000 12297000 10535000 9669000 27786000 24844000 21227000 0 5417700 0 15647000 14432000 16424000 0 0 0 25481000 25069000 26118000 0 0 0 22981 827 22266 427720;427721;427722;427723;427724;427725;427726;427727;427728;427729;427730;427731;427732;427733;427734;427735 262588;262589;262590;262591;262592;262593;262594;262595 262594 8 WKPEILDGFTK Unmodified 1332.7078 0.70778773 317 P0A784 orn Oligoribonuclease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 37.5 35.824 2;3 5.0696E-05 17309 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 118.77 112.03 1056700000 95579000 98179000 102820000 285990 0 230140 107040000 111590000 98849000 0 0 0 67350000 53781000 52531000 0 0 0 104980000 94631000 68834000 0 0 0 22982 317 22267 427736;427737;427738;427739;427740;427741;427742;427743;427744;427745;427746;427747;427748;427749;427750;427751;427752;427753;427754;427755;427756;427757;427758;427759;427760;427761 262596;262597;262598;262599;262600;262601;262602;262603;262604;262605;262606;262607;262608;262609;262610;262611;262612;262613;262614;262615;262616 262604 19 WLAAIHAEPMK Unmodified 1265.6591 0.6590634 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 2 1 2 1 1 1 1 1 1 2 2 2 1 1 26.957 25.71 2;3 0.0031238 11069 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 66.663 62.355 241870000 7896200 10658000 8442100 0 0 0 17287000 19588000 19854000 4669800 6656400 5168300 13784000 16590000 12452000 0 1557800 1498000 24096000 30557000 33244000 3946200 3927200 0 22983 997 22268 427762;427763;427764;427765;427766;427767;427768;427769;427770;427771;427772;427773;427774;427775;427776;427777;427778;427779;427780;427781;427782;427783;427784;427785;427786 262617;262618;262619;262620;262621;262622;262623;262624 262623 7 WLAGQNAPMPSR Unmodified 1326.6503 0.65028963 1604 P52097 tilS tRNA(Ile)-lysidine synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 26.451 25.477 2 0.00081129 11398 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 79.986 68.138 64138000 11728000 10530000 10736000 0 0 0 4963900 0 0 0 0 0 0 5799900 4780500 0 0 0 4550200 6397500 4652900 0 0 0 22984 1604 22269 427787;427788;427789;427790;427791;427792;427793;427794;427795 262625;262626 262625 2 WLAQGTIYPDVIESAASATGK Unmodified 2177.1004 0.10044891 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 1 1 2 2 2 2 2 2 50.571 49.177 2;3 3.0156E-34 23877 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 261.39 251.6 6060900000 462810000 472970000 474630000 2267900 3555400 0 391250000 398480000 202030000 2738300 0 0 650430000 565200000 568820000 0 0 0 609980000 643590000 612100000 0 0 0 22985 86 22270 427796;427797;427798;427799;427800;427801;427802;427803;427804;427805;427806;427807;427808;427809;427810;427811;427812;427813;427814;427815;427816;427817;427818;427819;427820;427821 262627;262628;262629;262630;262631;262632;262633;262634;262635;262636;262637;262638;262639;262640;262641;262642;262643;262644;262645;262646;262647;262648;262649 262642 23 WLASGPR Unmodified 785.41842 0.41842242 106 P05042 fumC Fumarate hydratase class II yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.512 18.001 2 0.0069081 6538 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 89.673 86.69 155910000 0 0 50849000 1149900 1185900 1181100 0 20196000 0 1189300 1016400 969200 0 0 10385000 0 0 0 20932000 23205000 22672000 0 976490 0 22986 106 22271 427822;427823;427824;427825;427826;427827;427828;427829;427830;427831;427832;427833;427834;427835;427836 262650;262651;262652 262650 3 WLAVANPSLSAVLDEHLGR Unmodified 2047.0851 0.085073618 709 P0AC86 glgP Glycogen phosphorylase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.929 48.523 3 2.4302E-14 23662 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 148.44 143.73 686060000 63424000 51812000 57259000 0 0 0 89726000 82423000 80595000 0 0 0 50344000 45727000 44097000 0 0 0 42528000 35927000 42200000 0 0 0 22987 709 22272 427837;427838;427839;427840;427841;427842;427843;427844;427845;427846;427847;427848 262653;262654;262655;262656;262657;262658;262659;262660;262661;262662 262656 10 WLDEDNK Unmodified 918.40831 0.40831125 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 17.337 17.708 2 0.030055 5097 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 66.993 66.993 23800000 0 0 1508400 0 0 0 0 2086800 0 0 0 0 0 1008800 0 8008200 5210400 5977100 0 0 0 0 0 0 22988 1004 22273 427849;427850;427851;427852;427853;427854 262663;262664;262665 262663 3 WLDEDNKSTLQELADR Unmodified 1931.9225 0.92248455 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 34.679 34.194 2;3 1.4964E-30 12175 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 237.3 216.34 362030000 0 0 0 0 0 0 3719500 0 2828600 0 0 0 0 0 0 134370000 121350000 99758000 0 0 0 0 0 0 22989 1004 22274 427855;427856;427857;427858;427859;427860;427861;427862 262666;262667;262668;262669;262670 262667 5 WLDTLGSAK Unmodified 989.5182 0.51819605 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 29.234 28.064 2 0.0011292 12920 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 92.439 62.02 181990000 65078000 61508000 47474000 980730 0 0 0 0 0 0 0 0 2568300 0 0 0 0 0 4377500 0 0 0 0 0 22990 1173 22275 427863;427864;427865;427866;427867;427868 262671;262672;262673 262672 3 WLEANNIDYR Unmodified 1292.6149 0.61494998 1235 P24178 yffB Protein YffB yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.925 30.585 2 7.6385E-07 14676 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.21 165.91 394750000 20030000 22262000 19709000 0 0 0 47091000 57277000 44362000 0 0 0 23870000 24225000 24007000 0 0 0 38108000 35974000 37840000 0 0 0 22991 1235 22276 427869;427870;427871;427872;427873;427874;427875;427876;427877;427878;427879;427880 262674;262675;262676 262674 3 WLELFAR Unmodified 933.50724 0.50723743 35 P00562 metL Bifunctional aspartokinase/homoserine dehydrogenase 2;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 47.321 45.881 2 0.001554 22696 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 127.95 121.19 157880000 9160900 10823000 8547800 0 0 0 16010000 13558000 15933000 0 673830 0 10245000 9669800 10718000 0 0 0 19160000 17017000 16363000 0 0 0 22992 35 22277 427881;427882;427883;427884;427885;427886;427887;427888;427889;427890;427891;427892;427893 262677;262678;262679;262680;262681 262679 5 WLELGLTDEEK Unmodified 1331.6609 0.66089712 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 43.256 42.04 2 1.0878E-07 20201 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.66 118.63 3589400000 0 0 0 980200 0 0 0 0 125850000 217310000 204980000 193680000 0 0 4403200 860580000 560280000 641090000 0 0 0 255850000 275050000 249380000 22993 463 22278 427894;427895;427896;427897;427898;427899;427900;427901;427902;427903;427904;427905;427906;427907;427908;427909;427910;427911;427912;427913;427914;427915;427916;427917;427918 262682;262683;262684;262685;262686;262687;262688;262689;262690;262691;262692;262693;262694;262695;262696;262697;262698;262699;262700;262701;262702;262703;262704;262705;262706 262699 24 WLELGLTDEEKQNQLEQLAEQYDELK Unmodified 3161.5405 0.54045422 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 53.738 52.589 3 3.5323E-62 19871 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 270.71 268.58 740590000 14265000 18503000 18466000 0 0 0 17269000 17651000 14897000 45598000 49523000 40448000 0 0 14895000 147170000 144580000 153870000 0 0 0 43452000 0 0 22994 463 22279 427919;427920;427921;427922;427923;427924;427925;427926;427927;427928;427929;427930;427931;427932 262707;262708;262709;262710;262711;262712 262709 6 WLELGLTDEEKQNQLEQLAEQYDELKHEFEK Unmodified 3831.8479 0.8479292 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 3 4 4 4 5 3 3 2 6 8 9 3 4 2 4 4 5 52.834 51.786 3;4;5;6 2.5922E-109 20664 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 319.45 318.08 63783000000 201390000 181440000 192730000 26473000 25502000 22092000 102030000 104580000 100660000 3772200000 3146700000 3041900000 151850000 163160000 142640000 8757900000 14580000000 16692000000 213380000 232110000 206280000 4399700000 3733900000 3591600000 22995 463 22280 427933;427934;427935;427936;427937;427938;427939;427940;427941;427942;427943;427944;427945;427946;427947;427948;427949;427950;427951;427952;427953;427954;427955;427956;427957;427958;427959;427960;427961;427962;427963;427964;427965;427966;427967;427968;427969;427970;427971;427972;427973;427974;427975;427976;427977;427978;427979;427980;427981;427982;427983;427984;427985;427986;427987;427988;427989;427990;427991;427992;427993;427994;427995;427996;427997;427998;427999;428000;428001;428002;428003;428004;428005;428006;428007;428008;428009;428010;428011;428012;428013;428014;428015;428016;428017;428018;428019;428020;428021;428022 262713;262714;262715;262716;262717;262718;262719;262720;262721;262722;262723;262724;262725;262726;262727;262728;262729;262730;262731;262732;262733;262734;262735;262736;262737;262738;262739;262740;262741;262742;262743;262744;262745;262746;262747;262748;262749;262750;262751;262752;262753;262754;262755;262756;262757;262758;262759;262760;262761;262762;262763;262764;262765;262766;262767;262768;262769;262770;262771;262772;262773;262774;262775;262776;262777;262778;262779;262780;262781;262782;262783;262784;262785;262786 262757 71 WLEPAWK Unmodified 928.48069 0.48068833 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 35.182 33.722 2 0.024068 16073 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 73.039 64.266 306120000 30834000 27406000 25870000 0 0 0 24771000 19455000 22554000 0 0 0 17072000 16449000 18046000 0 0 0 32544000 39441000 31683000 0 0 0 22996 806 22281 428023;428024;428025;428026;428027;428028;428029;428030;428031;428032;428033;428034 262787;262788;262789;262790;262791 262789 5 WLEQVLNER Unmodified 1185.6142 0.6142217 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.637 36.778 2 5.2938E-06 17889 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 173.23 166.54 467500000 31831000 29303000 25852000 1211600 1159800 1436300 35433000 34722000 38052000 818580 947300 823670 38439000 42690000 43303000 0 0 0 53040000 43734000 40537000 1555100 1311500 1298000 22997 558 22282 428035;428036;428037;428038;428039;428040;428041;428042;428043;428044;428045;428046;428047;428048;428049;428050;428051;428052;428053;428054;428055 262792;262793;262794;262795;262796;262797;262798;262799;262800;262801;262802;262803 262798 12 WLEVLGCGMVHPNVLR Unmodified 1878.9597 0.95967887 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.893 44.245 3 5.2626E-07 21394 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 106.58 96.413 568950000 55523000 53731000 51678000 2228000 0 0 33640000 33668000 31871000 2984900 3652400 3732400 43166000 40181000 43061000 0 0 0 56619000 55709000 52800000 2457400 0 2251700 22998 183 22283 428056;428057;428058;428059;428060;428061;428062;428063;428064;428065;428066;428067;428068;428069;428070;428071;428072;428073 262804;262805;262806;262807;262808;262809;262810;262811;262812;262813;262814;262815;262816;262817;262818 262815 15 WLFELNAK Unmodified 1019.544 0.54401687 1089 P13445 rpoS RNA polymerase sigma factor RpoS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 5 2 2 1 1 1 1 1 44.977 43.891 2 0.00083171 21775 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.29 110.58 5386800000 10193000 9921400 9451800 0 0 0 82126000 64986000 67192000 46819000 40223000 47545000 32846000 34782000 34442000 2016900000 1325500000 1503100000 17693000 18686000 16432000 3596100 0 4260500 22999 1089 22284 428074;428075;428076;428077;428078;428079;428080;428081;428082;428083;428084;428085;428086;428087;428088;428089;428090;428091;428092;428093;428094;428095;428096;428097;428098;428099 262819;262820;262821;262822;262823;262824;262825;262826;262827;262828;262829;262830;262831;262832;262833;262834;262835;262836;262837;262838;262839;262840;262841;262842;262843;262844;262845;262846;262847 262836 28 WLFNNLDSMSPELR Unmodified 1720.8243 0.82429083 867 P0AEK0 exoX Exodeoxyribonuclease 10 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 52.869 51.497 2 2.0997E-08 24178 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 186.87 177.92 93334000 0 8801300 8100500 0 0 0 0 0 0 0 0 0 10718000 10104000 11690000 0 0 0 13909000 15360000 14652000 0 0 0 23000 867 22285 428100;428101;428102;428103;428104;428105;428106;428107 262848;262849;262850 262850 3 WLGDSSLQPLVNLVQHHETSYR Unmodified 2578.2928 0.29283456 1538 P39407 yjjU Uncharacterized protein YjjU yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.92 47.515 4 0.00058547 23645 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 64.87 62.463 208640000 16786000 18117000 12099000 1848200 0 2418200 30543000 32968000 31519000 9426300 9467100 8834900 5538300 0 7406800 0 0 0 6020000 10230000 5417400 0 0 0 23001 1538 22286 428108;428109;428110;428111;428112;428113;428114;428115;428116;428117;428118;428119;428120;428121;428122;428123 262851;262852;262853 262852 3 WLGGMLTNWK Unmodified 1204.6063 0.60629955 373 P0A7V0 rpsB 30S ribosomal protein S2 yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.717 46.415 2 5.0374E-05 22557 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 135.83 124.24 4081600000 452090000 492560000 409130000 18718000 17323000 15238000 128570000 132130000 127130000 62140000 71180000 63521000 255520000 263000000 213280000 74993000 54660000 64902000 362380000 341690000 293290000 54856000 54737000 58572000 23002 373 22287 428124;428125;428126;428127;428128;428129;428130;428131;428132;428133;428134;428135;428136;428137;428138;428139;428140;428141;428142;428143;428144;428145;428146;428147 262854;262855;262856;262857;262858;262859;262860;262861;262862;262863;262864;262865;262866;262867;262868;262869;262870;262871;262872;262873;262874 262867 21 WLHMPVR Unmodified 937.49563 0.49562689 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By MS/MS By MS/MS 1 1 22.41 22.091 2 0.02149 8999 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 74.597 68.836 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23003 1230 22288 428148;428149 262875;262876 262875 2 WLHSLHSTLLSR Unmodified 1448.7888 0.78883202 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 3 3 24.249 23.421 2;3;4 3.5901E-05 7561 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 100.04 82.228 204560000 37629000 42218000 37015000 25599000 33726000 28379000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23004 1427 22289 428150;428151;428152;428153;428154;428155;428156;428157;428158;428159;428160;428161;428162;428163;428164;428165;428166;428167 262877;262878;262879;262880;262881;262882;262883;262884;262885;262886;262887;262888 262880 12 WLIDALQR Unmodified 1013.5658 0.56581494 855 P0AEF8 dppB Dipeptide transport system permease protein DppB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 43.744 42.405 2 0.045346 20684 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.76 53.936 24313000 8139900 6873000 9299900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23005 855 22290 428168;428169;428170 262889;262890;262891 262890 3 WLLPAYQR Unmodified 1045.5709 0.57090032 1772 P75791 ybiU Uncharacterized protein YbiU yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 38.835 36.733 2 0.0074667 17825 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.287 60.795 123320000 0 0 0 0 0 0 29031000 35221000 33215000 0 1217400 1095500 0 0 0 0 0 0 13306000 9385300 0 852120 0 0 23006 1772 22291 428171;428172;428173;428174;428175;428176;428177;428178 262892;262893 262892 2 WLLQTFK Unmodified 934.52764 0.52763852 1297 P27278 nadR Trifunctional NAD biosynthesis/regulator protein NadR;Transcriptional regulator NadR;Nicotinamide mononucleotide adenylyltransferase;Ribosylnicotinamide kinase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 40.016 38.521 2 0.02864 18804 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 68.422 61.071 18364000 5431900 4885000 3757800 0 171880 0 0 0 0 0 0 0 1668900 0 1022900 0 0 0 0 0 1425900 0 0 0 23007 1297 22292 428179;428180;428181;428182;428183;428184;428185 262894;262895 262894 2 WLLTQPEILMLDEPTR Unmodified 1954.0234 0.023384564 593 P0AAG8 mglA Galactose/methyl galactoside import ATP-binding protein MglA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.835 53.39 2 0.013367 19600 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 60.161 39.208 187390000 9759100 13526000 9585100 3358000 0 0 13104000 18275000 15585000 0 0 0 18867000 19678000 21790000 0 0 0 15902000 12353000 15613000 0 0 0 23008 593 22293 428186;428187;428188;428189;428190;428191;428192;428193;428194;428195;428196;428197;428198 262896 262896 0 WLNEGDTISIGNVTLQVLHCPGHTPGHVVFFDDR Unmodified 3829.8635 0.86347688 1783 P75849 ycbL Uncharacterized protein YcbL yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.885 49.624 5 1.0214E-43 24144 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 209.07 203.48 681590000 68977000 55906000 53746000 3719700 3792100 2404400 32305000 44558000 49709000 0 0 0 44592000 38136000 42164000 0 0 0 91737000 84985000 61767000 0 0 3093800 23009 1783 22294 428199;428200;428201;428202;428203;428204;428205;428206;428207;428208;428209;428210;428211;428212;428213;428214 262897;262898;262899;262900;262901;262902;262903;262904;262905;262906;262907 262900 11 WLPNFADCIAELK Unmodified 1575.7755 0.77554972 1138 P17411 chbF 6-phospho-beta-glucosidase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 53.415 52.004 2 0.01632 24501 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 76.332 68.951 33422000 0 0 0 0 0 0 0 4980200 0 0 0 0 11670000 8251700 8519900 0 0 0 0 0 0 0 0 0 23010 1138 22295 428215;428216;428217;428218 262908;262909;262910 262909 0 WLQEHFSDK Unmodified 1188.5564 0.55637247 1041 P0C0R7 rlmE Ribosomal RNA large subunit methyltransferase E yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 19.682 20.131 2 0.035986 7736 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 69.628 59.341 18967000 5534700 7411200 5150400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 870350 23011 1041 22296 428219;428220;428221;428222 262911;262912 262912 2 WLQWHWK Unmodified 1082.545 0.54501992 1393 P32176 fdoG Formate dehydrogenase-O major subunit no no 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 36.936 34.918 3 0.14684 13929 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 23.019 23.019 26695000 0 0 0 1316700 1302200 0 2731200 0 2980300 2401500 2739200 2061200 0 0 0 0 0 0 2566700 3544300 0 1267100 1749400 2035500 23012 1393 22297 428223;428224;428225;428226;428227;428228;428229;428230;428231;428232;428233;428234 262913;262914;262915;262916 262914 4 WLSGFFSR Unmodified 998.4974 0.49740102 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.32 42.805 2 0.13101 21262 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 51.854 47.717 140090000 13838000 8955700 10154000 0 0 0 12171000 10328000 10602000 0 0 0 11465000 9681500 10236000 0 0 0 14535000 14233000 13895000 0 0 0 23013 1784 22298 428235;428236;428237;428238;428239;428240;428241;428242;428243;428244;428245;428246 262917 262917 0 WLSQACEAK Unmodified 1091.507 0.50697943 944 P0AFI7 pdxH Pyridoxine/pyridoxamine 5'-phosphate oxidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.799 17.315 2 0.00014849 6130 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.06 127.04 382290000 37078000 28243000 28796000 0 0 0 39100000 33081000 33190000 8440600 0 1607400 23938000 25491000 21871000 3782800 2288600 2044800 27669000 31856000 33815000 0 0 0 23014 944 22299 428247;428248;428249;428250;428251;428252;428253;428254;428255;428256;428257;428258;428259;428260;428261;428262;428263 262918;262919;262920;262921;262922;262923;262924;262925;262926;262927;262928;262929;262930 262923 13 WLSTQESNALFLAAR Unmodified 1705.8788 0.87876924 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 47.707 45.624 2 0.01999 18316 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 46.706 38.642 10386000 0 0 0 0 0 0 0 0 0 3161100 3840500 3384800 0 0 0 0 0 0 0 0 0 0 0 0 23015 1877 22300 428264;428265;428266 262931 262931 1 WLVAAYAR Unmodified 948.51814 0.51813647 80 P03018 uvrD DNA helicase II yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 31.901 30.93 2 0.0015707 10071 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 107.74 101.71 45056000 0 0 0 0 0 0 0 0 0 0 0 0 0 2084700 2179500 8944100 12280000 10208000 2602800 0 2972200 1599500 0 2186200 23016 80 22301 428267;428268;428269;428270;428271;428272;428273;428274;428275 262932;262933 262932 2 WLVNTVATQAR Unmodified 1257.683 0.68296996 1228 P23894 htpX Protease HtpX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.757 30.324 2 1.8637E-07 11363 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 195.17 183.81 454120000 0 0 0 7640800 5939900 6652200 48867000 45661000 48529000 20113000 15890000 16121000 28056000 28437000 0 3314500 3017300 1972900 42844000 50532000 44874000 12154000 12886000 10621000 23017 1228 22302 428276;428277;428278;428279;428280;428281;428282;428283;428284;428285;428286;428287;428288;428289;428290;428291;428292;428293;428294;428295 262934;262935;262936;262937;262938;262939;262940;262941;262942;262943;262944;262945 262941 12 WLVTEGLK Unmodified 944.53312 0.53311783 826 P0AE06 acrA Multidrug efflux pump subunit AcrA yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.364 32.896 2 0.0021719 12484 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 102.72 23.122 805120000 36693000 33806000 30412000 0 3136000 2589400 76172000 70266000 63715000 26342000 27788000 26420000 43546000 42575000 37072000 7751200 5552600 6217300 81862000 78246000 79783000 8662900 7072700 9442600 23018 826 22303 428296;428297;428298;428299;428300;428301;428302;428303;428304;428305;428306;428307;428308;428309;428310;428311;428312;428313;428314;428315;428316;428317;428318 262946;262947;262948;262949;262950;262951;262952;262953;262954;262955;262956;262957;262958;262959;262960;262961 262954 16 WLVVDEVTQPTK Unmodified 1413.7504 0.75038083 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 3 3 3 2 1 1 3 3 3 1 1 1 2 2 2 39.454 37.946 2;3 3.1423E-08 14606 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 163.88 160.76 12180000000 229970000 212250000 226540000 0 0 0 118270000 120150000 105070000 711310000 621580000 502880000 178230000 176620000 163380000 1763200000 1388400000 1219500000 206490000 188250000 207190000 1234500000 1305500000 1300500000 23019 935 22304 428319;428320;428321;428322;428323;428324;428325;428326;428327;428328;428329;428330;428331;428332;428333;428334;428335;428336;428337;428338;428339;428340;428341;428342;428343;428344;428345;428346;428347;428348;428349;428350;428351;428352;428353;428354;428355 262962;262963;262964;262965;262966;262967;262968;262969;262970;262971;262972;262973;262974;262975;262976;262977;262978;262979;262980;262981;262982;262983;262984;262985;262986;262987;262988;262989;262990;262991;262992;262993;262994;262995;262996;262997;262998 262989 35 WLVVDEVTQPTKEITLEAAR Unmodified 2297.2267 0.22671206 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 45.635 44.276 2;3 1.126E-67 17492 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 299.52 290.23 1341600000 0 0 0 0 0 0 0 0 0 49435000 56797000 51568000 0 0 0 224480000 186060000 172200000 0 0 0 181960000 204810000 214340000 23020 935 22305 428356;428357;428358;428359;428360;428361;428362;428363;428364;428365;428366;428367;428368;428369;428370;428371;428372;428373 262999;263000;263001;263002;263003;263004;263005;263006;263007;263008;263009;263010;263011;263012;263013 263011 14 WLVVGDK Unmodified 815.45414 0.45413923 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.844 27.428 2 0.021102 13027 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 76.035 47.506 732050000 29539000 23161000 26390000 0 0 0 130640000 138560000 127450000 1172500 940170 0 46301000 52659000 47127000 0 0 0 33667000 38609000 35834000 0 0 0 23021 554 22306 428374;428375;428376;428377;428378;428379;428380;428381;428382;428383;428384;428385;428386;428387 263014;263015;263016;263017;263018;263019;263020;263021;263022;263023;263024;263025 263014 12 WMDNPQQLNTLR Unmodified 1514.73 0.72999651 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.441 32.993 2 6.105E-17 15757 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 213.8 211.48 519120000 117140000 107920000 96111000 0 0 0 34424000 33575000 24260000 0 0 0 17089000 13963000 13579000 0 0 0 15643000 21601000 23806000 0 0 0 23022 1091 22307 428388;428389;428390;428391;428392;428393;428394;428395;428396;428397;428398;428399 263026;263027;263028;263029 263026 4 WMDWANQTLSNAHR Unmodified 1728.7791 0.77907197 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 34.971 33.515 2;3 7.4149E-35 15930 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 252.42 247.32 1072100000 168040000 169550000 151420000 0 0 0 84546000 81675000 85768000 0 0 0 48965000 48586000 49415000 0 0 0 60035000 65294000 58767000 0 0 0 23023 713 22308 428400;428401;428402;428403;428404;428405;428406;428407;428408;428409;428410;428411;428412;428413;428414;428415;428416;428417;428418;428419;428420;428421;428422;428423 263030;263031;263032;263033;263034;263035;263036;263037;263038;263039;263040;263041;263042;263043;263044;263045;263046;263047;263048 263041 18 WMDYAVDKK Unmodified 1154.543 0.54303059 1464 P37329 modA Molybdate-binding periplasmic protein yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 19.367 19.949 3 0.081958 7717 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 33.229 33.229 157860000 52212000 55305000 50346000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23024 1464 22309 428424;428425;428426 263049 263049 0 WMIAEGYGDR Unmodified 1196.5284 0.52844316 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.414 31.919 2 2.5203E-05 14957 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 147.19 143.61 3274100000 492700000 472360000 440290000 0 0 542140 144940000 129630000 147260000 0 0 0 177670000 176200000 159890000 0 0 0 283740000 311340000 336620000 918140 0 0 23025 1444 22310 428427;428428;428429;428430;428431;428432;428433;428434;428435;428436;428437;428438;428439;428440 263050;263051;263052;263053;263054;263055;263056;263057;263058;263059;263060;263061 263058 12 WMIAEGYGDR Oxidation (M) 1212.5234 0.52335778 1444 P36683 acnB Aconitate hydratase B yes yes 0 1 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 29.048 27.729 2 0.039677 12920 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 56.916 49.696 296980000 78194000 76198000 68654000 0 0 0 12104000 11382000 12373000 0 0 0 1940500 0 0 0 0 0 16926000 19207000 0 0 0 0 23026 1444 22310 428441;428442;428443;428444;428445;428446;428447;428448;428449 263062;263063;263064;263065 263063 552 2 WMIAEGYGDRR Unmodified 1352.6296 0.62955418 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1 1 1 1 2 2 2 1 2 2 2 1 1 25.406 24.366 2;3 1.664E-08 10455 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 201.07 190.24 1377600000 205480000 195870000 176200000 3526800 2936300 3590600 39263000 39977000 51131000 0 0 1311700 69290000 72121000 59880000 0 0 2090600 157990000 151070000 140540000 3010800 0 2328700 23027 1444 22311 428450;428451;428452;428453;428454;428455;428456;428457;428458;428459;428460;428461;428462;428463;428464;428465;428466;428467;428468;428469;428470;428471;428472;428473;428474;428475;428476;428477 263066;263067;263068;263069;263070;263071;263072;263073;263074;263075;263076;263077;263078;263079;263080;263081;263082;263083;263084;263085 263083 19 WMLITGNNLNPR Unmodified 1427.7344 0.73435361 1213 P23830 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase yes yes 0 0 0 By MS/MS 1 41.527 39.974 2 5.2739E-11 19639 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.37 137.07 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23028 1213 22312 428478 263086 263086 1 WMNWSLTPK Unmodified 1161.5641 0.56410038 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 42.363 40.627 2 0.00023689 19883 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 141.52 131.1 154160000 46420000 43769000 46519000 0 0 0 3631100 2894000 3501700 0 0 0 0 0 1936300 0 0 0 0 2296800 3196800 0 0 0 23029 1816 22313 428479;428480;428481;428482;428483;428484;428485;428486;428487 263087;263088;263089 263087 3 WMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPLLGEK Unmodified 4054.0485 0.048500463 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 2 By MS/MS By MS/MS By MS/MS 1 1 1 54.975 53.391 4 0.090233 26248 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 28.737 24.544 503260000 0 0 0 0 0 0 150960000 143820000 0 0 0 0 0 0 0 0 0 0 0 208480000 0 0 0 0 23030 1816 22314 428488;428489;428490 263090;263091;263092 263092 3 WMQQYLSSDFYQR Unmodified 1750.7773 0.77734063 773 P0AD70 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 41.971 42.093 2 7.6918E-06 15758 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 123.63 121.21 6685900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3084500 2102100 1499400 0 0 0 0 0 0 23031 773 22315 428491;428492;428493 263093 263093 1 WMSDDLYDR Unmodified 1199.4917 0.4917233 1811 P76049 ycjY Uncharacterized protein YcjY yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 31.891 30.429 2 0.018478 14410 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 63.419 63.419 26397000 5186000 5495100 5061300 0 0 0 3839800 2819000 3995300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23032 1811 22316 428494;428495;428496;428497;428498;428499 263094 263094 1 WMVQCGSFR Unmodified 1169.511 0.51101895 1329 P29131 ftsN Cell division protein FtsN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 30.564 29.145 2 0.074971 13057 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 53.968 50.396 48911000 0 0 3697200 589270 0 0 4640600 4884700 4740100 0 0 0 3038700 3740900 4689800 0 0 0 7725900 6447600 4716800 0 0 0 23033 1329 22317 428500;428501;428502;428503;428504;428505;428506;428507;428508;428509;428510 263095;263096;263097 263096 0 WMWQMLR Unmodified 1049.4939 0.49391233 252 P0A6J5 dadA D-amino acid dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.622 46.104 2 0.002439 19045 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 112.27 108.87 278350000 8871000 10738000 8815500 5810900 7883500 8583900 13180000 11114000 12347000 15209000 15641000 13674000 10122000 12010000 12299000 0 0 0 20771000 25313000 24300000 12350000 14478000 14838000 23034 252 22318 428511;428512;428513;428514;428515;428516;428517;428518;428519;428520;428521;428522;428523;428524;428525;428526;428527;428528;428529;428530;428531 263098;263099;263100;263101;263102;263103;263104;263105;263106;263107;263108;263109;263110;263111;263112;263113;263114;263115 263098 18 WMYHYCCDNFDEMTDINK Unmodified 2440.9221 0.92210867 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.336 37.661 3 0.0017062 18339 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 60.541 60.541 171020000 14530000 15740000 11361000 1280300 1226000 0 11298000 8761100 10552000 0 3629800 4499400 9349900 9082400 8739600 0 1825000 0 17938000 20315000 18497000 0 0 2398900 23035 1451 22319 428532;428533;428534;428535;428536;428537;428538;428539;428540;428541;428542;428543;428544;428545;428546;428547;428548;428549 263116;263117;263118;263119 263116 4 WNAIMTVLR Unmodified 1102.5957 0.59573486 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 6 5 2 2 2 2 2 3 3 3 2 1 1 1 4 2 2 6 5 6 44.168 42.54 1;2;3 6.9703E-08 16495 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 189.53 161.42 38075000000 1009700000 1011000000 921530000 3765000000 3806500000 3532100000 1165900000 1083800000 1069900000 353920000 229060000 307870000 636850000 642920000 641620000 231650000 172240000 220470000 1275700000 1227300000 1221200000 4452000000 4747700000 4349000000 23036 939 22320 428550;428551;428552;428553;428554;428555;428556;428557;428558;428559;428560;428561;428562;428563;428564;428565;428566;428567;428568;428569;428570;428571;428572;428573;428574;428575;428576;428577;428578;428579;428580;428581;428582;428583;428584;428585;428586;428587;428588;428589;428590;428591;428592;428593;428594;428595;428596;428597;428598;428599;428600;428601;428602;428603;428604;428605;428606;428607;428608;428609;428610;428611;428612;428613;428614;428615;428616;428617;428618;428619 263120;263121;263122;263123;263124;263125;263126;263127;263128;263129;263130;263131;263132;263133;263134;263135;263136;263137;263138;263139;263140;263141;263142;263143;263144;263145;263146;263147;263148;263149;263150;263151;263152;263153;263154;263155;263156;263157;263158;263159;263160;263161;263162;263163;263164;263165;263166;263167;263168;263169;263170;263171;263172;263173;263174;263175;263176;263177;263178;263179;263180;263181;263182 263144 59 WNAIMTVLR Oxidation (M) 1118.5906 0.59064948 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 5 6 5 4 3 3 2 2 4 4 4 4 4 4 4 4 5 4 39.461 37.671 2 0.0002482 12916 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 127.02 127.02 1357100000 11722000 6534100 20468000 168270000 169090000 160340000 51929000 50243000 21600000 12615000 12496000 17448000 21251000 19255000 16805000 0 0 0 43104000 30667000 42036000 162440000 159510000 159290000 23037 939 22320 428620;428621;428622;428623;428624;428625;428626;428627;428628;428629;428630;428631;428632;428633;428634;428635;428636;428637;428638;428639;428640;428641;428642;428643;428644;428645;428646;428647;428648;428649;428650;428651;428652;428653;428654;428655;428656;428657;428658;428659;428660;428661;428662;428663;428664;428665;428666;428667;428668;428669;428670;428671;428672;428673;428674;428675;428676;428677;428678;428679;428680;428681;428682;428683;428684;428685;428686;428687;428688;428689;428690;428691;428692;428693;428694;428695;428696;428697 263183;263184;263185;263186;263187;263188;263189;263190;263191;263192;263193;263194;263195;263196;263197;263198;263199;263200;263201;263202;263203;263204;263205;263206;263207;263208;263209;263210;263211;263212;263213;263214;263215;263216;263217;263218;263219;263220;263221;263222;263223;263224;263225;263226;263227;263228;263229;263230;263231;263232;263233;263234 263214 447 48 WNGVTVTPK Unmodified 1000.5342 0.53418046 809 P0ADU5 ygiW Protein YgiW yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.732 21.678 2 0.0031097 9088 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 82.75 74.519 2423600000 334560000 274470000 264110000 1906700 2045000 0 413910000 341380000 302570000 2893200 2222300 1445900 92734000 91294000 84516000 0 0 0 107220000 106360000 0 0 0 0 23038 809 22321 428698;428699;428700;428701;428702;428703;428704;428705;428706;428707;428708;428709;428710;428711;428712;428713;428714 263235;263236;263237;263238;263239;263240;263241;263242;263243;263244;263245 263237 11 WNLADLPIVPEK Unmodified 1393.7606 0.76055158 1096 P14294 topB DNA topoisomerase 3 yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 2 1 1 2 1 1 2 2 1 1 1 1 1 1 2 1 45.483 44.467 2;3 0.0070459 25022 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 76.143 68.762 127020000 2632800 4085700 7925000 0 0 0 4163500 4091400 7211100 1365700 0 1612000 5235000 6129000 3448200 3133400 2023400 0 4026600 4026700 5157700 59541000 0 1212200 23039 1096 22322 428715;428716;428717;428718;428719;428720;428721;428722;428723;428724;428725;428726;428727;428728;428729;428730;428731;428732;428733;428734;428735;428736;428737 263246;263247 263246 0 WNLGWMHDTLDYMK Unmodified 1808.8014 0.80144689 169 P07762 glgB 1,4-alpha-glucan branching enzyme GlgB yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 49.785 48.377 3 0.0049423 22653 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 57.804 57.297 70826000 0 5429200 5348500 0 0 0 13080000 15481000 12796000 0 0 0 5911700 5176600 4644300 0 0 0 0 0 2959200 0 0 0 23040 169 22323 428738;428739;428740;428741;428742;428743;428744;428745;428746 263248;263249 263249 2 WNMLHPLETPR Unmodified 1392.6972 0.69723982 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 5 4 3 2 3 2 2 3 2 2 2 2 3 2 3 3 2 2 4 2 3 34.793 33.294 2;3 2.6676E-07 12400 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 172.98 164.76 43142000000 1685600000 1559600000 1603600000 3085400000 3576100000 3865200000 1533500000 1640300000 1608500000 379230000 394010000 356290000 994320000 1065400000 1043900000 274950000 187310000 210490000 1800000000 1909000000 1940100000 3786800000 4143300000 4499200000 23041 939 22324 428747;428748;428749;428750;428751;428752;428753;428754;428755;428756;428757;428758;428759;428760;428761;428762;428763;428764;428765;428766;428767;428768;428769;428770;428771;428772;428773;428774;428775;428776;428777;428778;428779;428780;428781;428782;428783;428784;428785;428786;428787;428788;428789;428790;428791;428792;428793;428794;428795;428796;428797;428798;428799;428800;428801;428802;428803;428804;428805;428806;428807;428808;428809 263250;263251;263252;263253;263254;263255;263256;263257;263258;263259;263260;263261;263262;263263;263264;263265;263266;263267;263268;263269;263270;263271;263272;263273;263274;263275;263276;263277;263278;263279;263280;263281;263282;263283;263284;263285;263286;263287;263288;263289;263290;263291;263292;263293;263294;263295;263296;263297;263298;263299;263300;263301;263302;263303;263304;263305;263306;263307;263308;263309;263310;263311;263312;263313;263314;263315;263316;263317;263318;263319;263320 263277 70 WNMLHPLETPR Oxidation (M) 1408.6922 0.69215444 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 14 11 14 4 6 4 3 5 5 5 3 3 1 1 4 2 3 9 15 12 29.256 27.825 2;3 7.0006E-05 12565 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 100.57 96.868 1839800000 21284000 20299000 11297000 325050000 166670000 192960000 57242000 48705000 37098000 11081000 21749000 21915000 30098000 21373000 17776000 3033800 3131300 0 33992000 26082000 32347000 146160000 286170000 304230000 23042 939 22324 428810;428811;428812;428813;428814;428815;428816;428817;428818;428819;428820;428821;428822;428823;428824;428825;428826;428827;428828;428829;428830;428831;428832;428833;428834;428835;428836;428837;428838;428839;428840;428841;428842;428843;428844;428845;428846;428847;428848;428849;428850;428851;428852;428853;428854;428855;428856;428857;428858;428859;428860;428861;428862;428863;428864;428865;428866;428867;428868;428869;428870;428871;428872;428873;428874;428875;428876;428877;428878;428879;428880;428881;428882;428883;428884;428885;428886;428887;428888;428889;428890;428891;428892;428893;428894;428895;428896;428897;428898;428899;428900;428901;428902;428903;428904;428905;428906;428907;428908;428909;428910;428911;428912;428913;428914;428915;428916;428917;428918;428919;428920;428921;428922;428923;428924;428925;428926;428927;428928;428929;428930;428931;428932;428933;428934;428935;428936;428937;428938;428939;428940;428941;428942 263321;263322;263323;263324;263325;263326;263327;263328;263329;263330;263331;263332;263333;263334;263335;263336;263337;263338;263339;263340;263341;263342;263343;263344;263345;263346;263347;263348;263349;263350;263351;263352;263353;263354;263355;263356;263357;263358;263359;263360;263361;263362;263363;263364;263365;263366;263367;263368;263369;263370;263371;263372;263373;263374;263375;263376;263377;263378;263379;263380;263381;263382;263383;263384;263385;263386;263387;263388;263389;263390;263391;263392;263393;263394;263395;263396;263397;263398;263399;263400;263401;263402 263346 448 80 WNMLHPLETPRVPYIAQVMNDAPAVASTDYMK Unmodified 3657.7782 0.77821562 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 52.248 50.996 4 8.8537E-08 18510 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 84.516 84.438 82909000 0 0 0 23752000 31324000 27833000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23043 939 22325 428943;428944;428945 263403;263404;263405 263403 3 WNMLLSLR Unmodified 1031.5586 0.55862107 1978 Q47710 yqjK Uncharacterized protein YqjK yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.169 45.567 2 0.00053653 22654 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 133.79 123.8 63698000 4030600 0 2439000 1431100 1622500 1843800 10012000 10178000 12457000 4244900 3895200 0 0 0 0 0 0 0 4372800 3435700 0 0 2174000 1561600 23044 1978 22326 428946;428947;428948;428949;428950;428951;428952;428953;428954;428955;428956;428957;428958;428959 263406;263407;263408;263409;263410;263411 263407 6 WNTGQSEEAWQGAK Unmodified 1590.7063 0.70628418 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 24.307 23.41 2 5.7953E-27 10092 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 244.16 244.16 163490000 25288000 23079000 21723000 0 0 0 13149000 12810000 8812000 0 0 0 10135000 8647300 8551700 0 0 0 10289000 12332000 8675600 0 0 0 23045 1006 22327 428960;428961;428962;428963;428964;428965;428966;428967;428968;428969;428970;428971 263412;263413;263414;263415;263416;263417;263418;263419;263420 263417 9 WPDVLLQFEDFAQK Unmodified 1734.8617 0.86172219 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 55.212 53.72 2 6.1108E-09 25431 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 155.99 147.26 954610000 49235000 0 0 0 0 0 66494000 68083000 51664000 0 0 0 117720000 121170000 103040000 0 0 0 132300000 122640000 122260000 0 0 0 23046 1283 22328 428972;428973;428974;428975;428976;428977;428978;428979;428980;428981 263421;263422;263423;263424;263425;263426;263427 263427 7 WPEEFAR Unmodified 933.43447 0.43446642 1055 P10378 entE Enterobactin synthase component E yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.208 26.977 2 0.0023929 12373 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 113.08 99.412 102240000 5068400 5413900 4851200 0 0 0 5081100 4433000 5277300 0 0 0 9007200 7168500 6806100 0 0 0 15196000 15745000 18192000 0 0 0 23047 1055 22329 428982;428983;428984;428985;428986;428987;428988;428989;428990;428991;428992;428993 263428;263429;263430;263431;263432;263433;263434 263429 7 WPETALTR Unmodified 972.50288 0.50288033 196 P09029 purK N5-carboxyaminoimidazole ribonucleotide synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.094 26.104 2 0.0039626 11678 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 89.046 76.058 121890000 34666000 31914000 27073000 0 0 0 0 0 0 0 0 0 4257300 3025000 4034000 0 0 0 5556300 6418000 4948700 0 0 0 23048 196 22330 428994;428995;428996;428997;428998;428999;429000;429001;429002 263435;263436;263437 263437 3 WPEWDVPGGQLTTK Unmodified 1612.7886 0.78855725 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 45.299 43.959 2 2.0805E-05 21562 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.86 114.72 149240000 52480000 50814000 45946000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23049 1160 22331 429003;429004;429005 263438;263439 263438 2 WPGPVTFVFPAPATTPR Unmodified 1839.9672 0.96719031 1578 P45748 tsaC Threonylcarbamoyl-AMP synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 54.212 52.732 2 0.0001724 25931 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 78.486 65.925 39604000 4651300 0 0 0 0 0 3385200 0 0 2287800 0 5500200 0 5009800 0 0 0 0 9689500 9080700 0 0 0 0 23050 1578 22332 429006;429007;429008;429009;429010;429011;429012 263440 263440 0 WPGSTLPVVEVDALER Unmodified 1766.9203 0.9202997 1330 P29208 menC o-succinylbenzoate synthase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 51.349 50.098 2 0.00031875 23353 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 68.809 60.705 71187000 7074300 0 3741600 0 0 0 6300100 5340600 7835500 0 0 0 6276300 5168800 6341000 0 0 0 9257700 8432200 5419300 0 0 0 23051 1330 22333 429013;429014;429015;429016;429017;429018;429019;429020;429021;429022;429023 263441 263441 1 WPGTESAFQVHR Unmodified 1413.6789 0.67894722 1665 P63417 yhbS Uncharacterized N-acetyltransferase YhbS yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 2 2 2 2 2 2 26.613 25.516 2;3 1.9445E-08 11520 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 136.96 135.05 822570000 47761000 40032000 38679000 0 0 0 94731000 93287000 95924000 0 0 0 80441000 74399000 70510000 0 0 0 63079000 66106000 57624000 0 0 0 23052 1665 22334 429024;429025;429026;429027;429028;429029;429030;429031;429032;429033;429034;429035;429036;429037;429038;429039;429040;429041;429042;429043;429044;429045;429046 263442;263443;263444;263445;263446;263447;263448;263449;263450;263451;263452;263453;263454;263455;263456;263457 263449 15 WPIGLGGK Unmodified 826.47012 0.47012364 994 P0AG82 pstS Phosphate-binding protein PstS yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 33.144 31.622 1;2 0.0015936 14433 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 122.15 99.864 2613100000 12389000 10914000 10381000 1729900 1692500 2059200 339250000 331530000 329950000 4735300 5550200 4792000 234390000 206550000 207390000 4877500 0 3092100 310060000 298340000 271570000 8477500 6652800 6742300 23053 994 22335 429047;429048;429049;429050;429051;429052;429053;429054;429055;429056;429057;429058;429059;429060;429061;429062;429063;429064;429065;429066;429067;429068;429069;429070;429071;429072;429073;429074;429075;429076;429077;429078 263458;263459;263460;263461;263462;263463;263464;263465;263466;263467;263468;263469;263470;263471;263472;263473;263474;263475;263476;263477;263478;263479;263480 263476 23 WPLAELPAA Unmodified 966.51747 0.51746776 121 P05852 tsaD tRNA N6-adenosine threonylcarbamoyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 53.426 51.986 2 0.051342 25325 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 53.71 52.201 47505000 4512800 2513300 3672300 0 0 0 2627000 3557600 2881700 0 0 0 4992900 3589900 3444800 0 0 0 4006600 6180500 5525800 0 0 0 23054 121 22336 429079;429080;429081;429082;429083;429084;429085;429086;429087;429088;429089;429090 263481;263482;263483 263483 3 WPLAQPFR Unmodified 1013.5447 0.54468557 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 38.521 36.811 2 0.00070457 17153 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 126.68 114.24 676530000 115130000 114340000 112410000 0 0 0 52313000 50945000 51566000 0 0 0 26896000 22719000 24808000 0 0 0 35861000 34311000 32628000 2609500 0 0 23055 218 22337 429091;429092;429093;429094;429095;429096;429097;429098;429099;429100;429101;429102;429103 263484;263485;263486;263487;263488;263489;263490;263491;263492;263493;263494;263495 263493 12 WQALPMLEQPVAAGEMSPVINPAEPK Unmodified 2802.4085 0.40845795 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS 2 2 2 1 2 1 1 1 2 2 2 2 2 2 2 1 2 2 54.18 52.784 2;3 5.088E-10 21132 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 147.56 141.15 438680000 23710000 20009000 24387000 0 12699000 7518700 0 0 6416200 8290700 0 16463000 21566000 21063000 20903000 0 0 0 56109000 66420000 59361000 11188000 28171000 34400000 23056 215 22338 429104;429105;429106;429107;429108;429109;429110;429111;429112;429113;429114;429115;429116;429117;429118;429119;429120;429121;429122;429123;429124;429125;429126;429127;429128;429129;429130;429131;429132;429133;429134 263496;263497;263498;263499 263497 4 WQCVEFAR Unmodified 1094.4967 0.4967491 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.118 26.951 2 3.551E-05 12677 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 173.93 169.58 497950000 44138000 39839000 31311000 0 0 0 55310000 47739000 47800000 0 0 0 39535000 34872000 30732000 0 0 0 43784000 38801000 44087000 0 0 0 23057 880 22339 429135;429136;429137;429138;429139;429140;429141;429142;429143;429144;429145;429146 263500;263501;263502;263503;263504;263505;263506;263507;263508;263509;263510;263511 263501 12 WQDGNSVTEEDIHALAGWLK Unmodified 2268.0811 0.081110453 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 51.744 50.46 2;3 1.125E-29 24763 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 263.56 257.92 2495600000 651070000 626860000 668970000 0 0 0 98071000 103080000 113620000 2256900 1497400 0 32114000 24416000 25461000 0 0 0 53050000 42729000 52384000 0 0 0 23058 1254 22340 429147;429148;429149;429150;429151;429152;429153;429154;429155;429156;429157;429158;429159;429160;429161;429162;429163 263512;263513;263514;263515;263516;263517;263518;263519;263520;263521;263522;263523;263524;263525 263518 14 WQDMLAFAAEVTK Unmodified 1508.7334 0.73335055 643 P0ABA4 atpH ATP synthase subunit delta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.594 51.433 2 2.0752E-06 20661 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 133.07 116.69 537080000 13853000 15909000 12258000 4910400 5280000 4950200 32123000 34404000 32978000 18812000 22012000 16092000 44003000 37643000 36304000 6338500 6831700 8639100 51248000 51001000 45769000 11681000 11900000 12137000 23059 643 22341 429164;429165;429166;429167;429168;429169;429170;429171;429172;429173;429174;429175;429176;429177;429178;429179;429180;429181;429182;429183;429184;429185;429186;429187 263526;263527;263528;263529;263530;263531;263532;263533;263534;263535;263536;263537;263538;263539;263540;263541;263542;263543;263544;263545;263546;263547;263548 263529 23 WQEGNEER Unmodified 1046.4417 0.44173664 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.528 12.371 2 0.00076589 3277 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 124.08 124.08 139880000 34071000 31404000 29469000 0 0 0 5230900 0 0 0 0 0 6126300 6125700 6158200 0 0 0 6494400 8922300 5884100 0 0 0 23060 1107 22342 429188;429189;429190;429191;429192;429193;429194;429195;429196;429197 263549;263550;263551;263552;263553 263550 5 WQIEMSTSLR Unmodified 1249.6125 0.61250714 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 38.997 36.665 2 0.0042799 14535 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 81.95 79.893 26311000 0 0 0 0 0 0 0 0 4382500 6028600 6107700 5601700 0 0 0 0 0 0 0 0 0 2290900 1899800 0 23061 500 22343 429198;429199;429200;429201;429202;429203 263554;263555 263554 1 WQIPMDAGVVLR Unmodified 1383.7333 0.73329097 1330 P29208 menC o-succinylbenzoate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.776 48.37 2 8.0857E-05 23541 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 119.68 112.79 276700000 17203000 17926000 13558000 0 0 0 24793000 18565000 21885000 0 0 0 24134000 22977000 22760000 0 0 0 28855000 31334000 32714000 0 0 0 23062 1330 22344 429204;429205;429206;429207;429208;429209;429210;429211;429212;429213;429214;429215 263556;263557;263558;263559;263560;263561;263562;263563;263564 263560 8 WQNTVGRPELQAFYGALAGQK Unmodified 2333.1917 0.19166396 1241 P24202 mrr Mrr restriction system protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 44.608 43.074 3 3.3646E-05 21327 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 84.499 81.813 131710000 11801000 0 11651000 0 0 0 14711000 15705000 14065000 0 0 0 8793000 8596300 6499500 0 0 0 12225000 15144000 12516000 0 0 0 23063 1241 22345 429216;429217;429218;429219;429220;429221;429222;429223;429224;429225;429226 263565 263565 1 WQQTPQGLESR Unmodified 1328.6473 0.64731274 1574 P45527 yhbU Uncharacterized protease YhbU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 20.225 20.387 2 2.0871E-05 8018 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.43 107.35 77237000 0 0 0 0 0 0 14576000 14166000 14179000 1534900 1177000 0 8800200 0 4274000 629200 0 0 5568600 7400000 4931500 0 0 0 23064 1574 22346 429227;429228;429229;429230;429231;429232;429233;429234;429235;429236;429237 263566;263567;263568;263569;263570;263571 263571 6 WQSSGGEK Unmodified 877.393 0.39299553 1172 P21170 speA Biosynthetic arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 9.3251 10.079 2 0.010731 2138 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 77.923 77.923 13805000 0 0 0 0 0 0 5026000 4301100 4477500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23065 1172 22347 429238;429239;429240 263572;263573;263574;263575;263576;263577 263572 6 WQTHLINPHIILSK Unmodified 1698.957 0.95695998 768 P0AD49 raiA Ribosome-associated inhibitor A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 2 2 2 3 3 3 2 2 1 3 3 3 1 1 1 3 3 3 1 1 32.06 30.65 2;3;4 1.3854E-26 14691 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 238.02 233.13 5234200000 270920000 247210000 236190000 13100000 10731000 9803300 687980000 779580000 706760000 36700000 32512000 19565000 279650000 319050000 324500000 13373000 14876000 15792000 376830000 437400000 388530000 7509000 0 5604000 23066 768 22348 429241;429242;429243;429244;429245;429246;429247;429248;429249;429250;429251;429252;429253;429254;429255;429256;429257;429258;429259;429260;429261;429262;429263;429264;429265;429266;429267;429268;429269;429270;429271;429272;429273;429274;429275;429276;429277;429278;429279;429280;429281;429282;429283;429284;429285;429286;429287;429288;429289;429290;429291;429292 263578;263579;263580;263581;263582;263583;263584;263585;263586;263587;263588;263589;263590;263591;263592;263593;263594;263595;263596;263597;263598;263599;263600;263601;263602;263603;263604;263605;263606;263607;263608;263609;263610;263611;263612;263613;263614;263615;263616;263617;263618;263619;263620;263621;263622 263593 45 WQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMR Unmodified 4442.108 0.10795769 1303 P27431 roxA 50S ribosomal protein L16 arginine hydroxylase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 2 1 1 2 2 2 2 2 2 2 2 2 53.225 51.78 5;6 3.2391E-10 25668 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 90.336 90.332 417770000 18326000 11426000 13182000 0 0 0 47334000 63718000 46896000 0 0 0 36820000 29472000 30673000 0 0 0 42184000 36844000 40892000 0 0 0 23067 1303 22349 429293;429294;429295;429296;429297;429298;429299;429300;429301;429302;429303;429304;429305;429306;429307;429308;429309;429310;429311;429312;429313;429314 263623;263624 263623 2 WQVTQAK Unmodified 859.4552 0.45520186 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 14.59 15.356 2 0.0051918 5160 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 100.67 83.965 258890000 27678000 26642000 23655000 0 0 0 26062000 23686000 24967000 0 0 0 16373000 15975000 13454000 0 0 0 19035000 25367000 15993000 0 0 0 23068 184 22350 429315;429316;429317;429318;429319;429320;429321;429322;429323;429324;429325;429326 263625;263626;263627;263628 263626 4 WRDDAIMR Unmodified 1061.5076 0.50764813 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 18.016 18.614 3 0.043763 6512 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 51.066 47.495 101580000 10514000 11397000 11201000 0 0 0 12281000 8043400 7006600 0 0 0 4789400 5459700 4366800 0 0 0 8137000 8691300 9690500 0 0 0 23069 1006 22351 429327;429328;429329;429330;429331;429332;429333;429334;429335;429336;429337;429338 263629;263630;263631 263631 2 WRDWLAQK Unmodified 1101.572 0.57196295 1787 P75876 rlmI Ribosomal RNA large subunit methyltransferase I yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 25.787 24.495 3 0.026157 9392 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 49.57 43.846 42727000 0 3040000 0 0 0 962790 5577100 5206500 0 3472100 2929600 3024200 3617700 0 1818600 0 0 0 5264400 5415600 2398600 0 0 0 23070 1787 22352 429339;429340;429341;429342;429343;429344;429345;429346;429347;429348;429349;429350 263632;263633 263632 2 WRGVRPTVR Unmodified 1125.6519 0.65194461 1620 P60422 rplB 50S ribosomal protein L2 yes yes 0 0 2 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 12.372 12.782 3 0.072215 2869 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 41.117 38.139 55111000 0 0 0 6357700 7356000 8395600 0 0 0 2512200 2306200 2490600 0 0 0 4493500 4801100 2588000 0 0 0 0 6452900 7357500 23071 1620 22353 429351;429352;429353;429354;429355;429356;429357;429358;429359;429360;429361 263634 263634 1 WRQLNVFEGER Unmodified 1432.7211 0.72114638 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 27.723 26.927 3 0.037731 9983 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 44.612 42.049 27349000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6188400 5982000 7251900 0 0 0 3663700 1757000 2506200 23072 458 22354 429362;429363;429364;429365;429366;429367 263635 263635 0 WSDGLHQAVEAK Unmodified 1339.6521 0.65206377 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 17.451 17.796 2;3 1.291E-05 5014 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 127.87 117.11 892970000 29117000 24819000 21470000 2065900 1580200 1658300 36201000 32282000 34239000 89283000 76648000 74621000 21867000 21556000 72482000 38545000 27453000 31791000 37908000 36924000 36516000 51236000 47984000 44723000 23073 1057 22355 429368;429369;429370;429371;429372;429373;429374;429375;429376;429377;429378;429379;429380;429381;429382;429383;429384;429385;429386;429387;429388;429389;429390;429391;429392;429393;429394;429395;429396;429397;429398;429399;429400;429401 263636;263637;263638;263639;263640;263641;263642;263643;263644;263645;263646;263647;263648 263637 13 WSDGTPVTAQDFVYSWQR Unmodified 2141.9807 0.98066813 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 2 2 2 1 2 3 2 2 2 2 50.555 49.179 2;3 1.8592E-29 24131 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 269.14 266.83 9019800000 2748900000 2304900000 1927500000 11861000 11522000 9638400 265750000 267510000 214090000 0 0 1426500 195660000 165370000 171740000 0 0 0 255670000 231140000 237130000 0 0 0 23074 1217 22356 429402;429403;429404;429405;429406;429407;429408;429409;429410;429411;429412;429413;429414;429415;429416;429417;429418;429419;429420;429421;429422;429423;429424;429425;429426;429427;429428;429429;429430;429431;429432;429433;429434;429435;429436 263649;263650;263651;263652;263653;263654;263655;263656;263657;263658;263659;263660;263661;263662;263663;263664;263665;263666;263667;263668;263669;263670;263671;263672;263673;263674;263675;263676;263677;263678 263653 30 WSDQQLTFLMR Unmodified 1423.6918 0.69182009 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.977 46.583 2 1.4184E-44 22669 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 309.38 307.22 1347700000 160220000 146060000 138870000 0 0 0 102960000 96702000 97856000 0 0 0 95914000 89165000 81769000 0 0 0 105510000 112510000 120120000 0 0 0 23075 94 22357 429437;429438;429439;429440;429441;429442;429443;429444;429445;429446;429447;429448 263679;263680;263681;263682;263683;263684;263685;263686;263687;263688;263689 263683 11 WSELDEQTQALYPQQNLR Unmodified 2218.0655 0.065460388 1262 P25539 ribD Riboflavin biosynthesis protein RibD;Diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 39.823 38.149 2;3 2.5358E-30 18594 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 225.13 217.58 242520000 21966000 20844000 19744000 0 0 0 22263000 21571000 21039000 0 0 0 18301000 18364000 15502000 0 0 0 22512000 20705000 19713000 0 0 0 23076 1262 22358 429449;429450;429451;429452;429453;429454;429455;429456;429457;429458;429459;429460;429461;429462;429463;429464;429465;429466;429467;429468;429469;429470;429471;429472 263690;263691;263692;263693;263694;263695;263696;263697;263698 263692 9 WSIVGAYYYDTNANK Unmodified 1763.8155 0.81550028 1372 P31554 lptD LPS-assembly protein LptD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 31.859 30.522 3 0.16372 14274 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 6.4071 4.3376 248990000 0 46548000 38969000 0 0 0 0 33924000 34121000 0 0 0 55117000 0 0 0 0 0 0 0 40309000 0 0 0 23077 1372 22359 429473;429474;429475;429476;429477;429478 263699 263699 1 WSLVGEHNMHNGLMAIAAAR Unmodified 2177.0622 0.062246461 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 2 2 2 1 2 2 37.306 35.666 3;4 8.6011E-07 17266 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.846 81.027 183110000 13019000 9947800 0 284540 0 0 7386500 5011000 6573300 0 0 0 21858000 22860000 23088000 0 0 0 17670000 28450000 26965000 0 0 0 23078 1500 22360 429479;429480;429481;429482;429483;429484;429485;429486;429487;429488;429489;429490;429491;429492;429493;429494;429495 263700;263701;263702;263703 263700 4 WSTFFAEQR Unmodified 1170.5458 0.54580778 1936 P77739 yniA Uncharacterized protein YniA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 35.852 34.507 2 0.00028978 16421 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 118.74 104.07 78890000 22982000 27491000 22457000 0 0 0 0 0 0 0 0 0 2873000 3088000 0 0 0 0 0 0 0 0 0 0 23079 1936 22361 429496;429497;429498;429499;429500 263704;263705;263706 263706 3 WSVPLTVR Unmodified 956.54435 0.54435122 1411 P33219 yebF Protein YebF yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.775 35.094 2 0.0010066 16191 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 113.89 110.5 1053200000 130410000 139030000 120710000 719980 657010 500600 100280000 101290000 97308000 0 0 0 34873000 36148000 41306000 0 0 0 91885000 83070000 73532000 0 655300 830840 23080 1411 22362 429501;429502;429503;429504;429505;429506;429507;429508;429509;429510;429511;429512;429513;429514;429515;429516;429517 263707;263708;263709;263710;263711;263712;263713;263714;263715;263716;263717;263718 263717 12 WTADVEAGK Unmodified 975.46616 0.46616048 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.861 18.365 2 0.0034482 6489 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 81.548 68.511 456310000 28174000 26301000 17015000 0 0 0 51934000 51013000 53609000 0 0 2795500 30585000 28385000 25993000 5567900 5367900 5382000 41509000 42144000 40538000 0 0 0 23081 37 22363 429518;429519;429520;429521;429522;429523;429524;429525;429526;429527;429528;429529;429530;429531;429532;429533 263719;263720;263721;263722;263723;263724;263725;263726;263727;263728 263727 10 WTALTNR Unmodified 860.45045 0.45045083 132 P06864 ebgA Evolved beta-galactosidase subunit alpha yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 2 1 1 1 1 2 43.047 40.683 2 0.14127 16537 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 46.351 46.351 61552000 0 0 0 0 0 0 0 0 0 18712000 12163000 7522000 0 0 0 0 0 0 0 0 0 7753600 5654200 9747000 23082 132 22364 429534;429535;429536;429537;429538;429539;429540;429541 263729;263730 263729 2 WTDDDLYGIIR Unmodified 1365.6565 0.65648044 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 47.178 45.743 2 1.1349E-07 22211 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 172.21 159.69 1358000000 0 170880000 155320000 0 0 0 147510000 148800000 147820000 0 0 0 114020000 0 129930000 0 0 0 161650000 182100000 0 0 0 0 23083 58 22365 429542;429543;429544;429545;429546;429547;429548;429549;429550 263731;263732;263733;263734;263735;263736;263737 263735 7 WTDNAEPTEDSSDYHVTTSQHAR Unmodified 2646.1219 0.12186565 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 1 1 2 2 2 1 17.179 17.721 3;4 2.5524E-15 6340 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 146.99 145.84 1586200000 218100000 191000000 189640000 0 650360 999910 111030000 99020000 91632000 5383000 2452600 5432200 102230000 136240000 116130000 9910600 6299000 4938000 112410000 80159000 101370000 1202100 0 0 23084 297 22366 429551;429552;429553;429554;429555;429556;429557;429558;429559;429560;429561;429562;429563;429564;429565;429566;429567;429568;429569;429570;429571;429572;429573;429574;429575;429576;429577;429578;429579;429580;429581;429582;429583;429584;429585 263738;263739;263740;263741;263742;263743;263744;263745;263746;263747;263748;263749;263750;263751;263752;263753;263754;263755;263756;263757;263758;263759;263760;263761 263755 24 WTDQSGQDR Unmodified 1091.4632 0.46320036 1010 P0AGE0 ssb Single-stranded DNA-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 11.319 12.084 2 4.0379E-05 3092 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 151.5 138.46 349670000 65865000 66436000 58741000 0 0 0 14104000 12952000 13509000 0 0 0 18307000 14404000 11327000 0 3553700 0 24782000 25552000 20141000 0 0 0 23085 1010 22367 429586;429587;429588;429589;429590;429591;429592;429593;429594;429595;429596;429597;429598 263762;263763;263764;263765 263765 4 WTEVIGMEHIR Unmodified 1369.6813 0.6812554 749 P0ACV0 lpxL Lipid A biosynthesis lauroyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 2 1 1 2 2 2 1 2 1 1 1 1 30.63 29.039 2;3 0.00039108 13558 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 84.658 82.292 175570000 0 6744500 2926800 1433200 1186300 2094100 16611000 16687000 13595000 4572900 3480200 3580500 14207000 14295000 14125000 0 0 0 15149000 22297000 14486000 2772100 3223200 2104600 23086 749 22368 429599;429600;429601;429602;429603;429604;429605;429606;429607;429608;429609;429610;429611;429612;429613;429614;429615;429616;429617;429618;429619;429620;429621;429622;429623 263766;263767;263768;263769;263770;263771;263772;263773;263774;263775;263776;263777;263778;263779 263773 12 WTGIPVSR Unmodified 914.4974 0.49740102 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.191 25.254 2 0.00037662 11209 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 142.64 139.52 1504300000 154290000 144570000 145000000 2856500 2649400 0 191660000 191570000 217590000 0 0 0 73582000 70249000 63299000 1902100 1011500 863650 75279000 78577000 87770000 0 0 1560200 23087 1662 22369 429624;429625;429626;429627;429628;429629;429630;429631;429632;429633;429634;429635;429636;429637;429638;429639;429640;429641 263780;263781;263782;263783;263784;263785;263786;263787;263788;263789;263790;263791;263792;263793 263789 13 WTGMCGELAGDER Unmodified 1480.6075 0.60749811 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 1 1 1 1 2 1 2 1 1 1 2 2 1 1 1 29.324 27.948 2 5.47E-24 12696 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 237.93 237.93 5370300000 309820000 311820000 334090000 4566600 5130900 4676700 447690000 483740000 421460000 8721300 8392900 7942100 509260000 465230000 474610000 5296700 2580800 0 525920000 539450000 487710000 4754900 3622900 3780900 23088 192 22370 429642;429643;429644;429645;429646;429647;429648;429649;429650;429651;429652;429653;429654;429655;429656;429657;429658;429659;429660;429661;429662;429663;429664;429665;429666;429667;429668;429669;429670 263794;263795;263796;263797;263798;263799;263800;263801;263802;263803;263804;263805;263806;263807;263808;263809;263810;263811;263812;263813;263814;263815;263816;263817;263818;263819;263820;263821;263822;263823;263824;263825;263826;263827;263828;263829;263830 263815 31 WTGMCGELAGDER Oxidation (M) 1496.6024 0.60241274 192 P08839 ptsI Phosphoenolpyruvate-protein phosphotransferase yes yes 0 1 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 3 3 3 4 3 5 3 2 22.631 22.43 2 0.00041564 9318 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.397 83.397 132050000 0 5011500 0 0 0 0 15399000 13430000 14911000 0 0 0 12065000 15974000 11559000 0 0 0 19972000 13873000 9856000 0 0 0 23089 192 22370 429671;429672;429673;429674;429675;429676;429677;429678;429679;429680;429681;429682;429683;429684;429685;429686;429687;429688;429689;429690;429691;429692;429693;429694;429695;429696;429697;429698;429699;429700;429701 263831;263832;263833;263834;263835;263836;263837;263838;263839 263834 61 8 WTHVNIPLVVSR Unmodified 1419.7987 0.79866842 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 1 36.156 34.523 2;3 3.5435E-05 16434 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 100.31 92.943 1517800000 32747000 46866000 29972000 2361700 2529400 1795000 243560000 169310000 220990000 29405000 23762000 24829000 105890000 101900000 85688000 7466500 5194500 7106700 113040000 125220000 118320000 6617000 6845700 6408800 23090 1747 22371 429702;429703;429704;429705;429706;429707;429708;429709;429710;429711;429712;429713;429714;429715;429716;429717;429718;429719;429720;429721;429722;429723;429724;429725;429726;429727;429728;429729;429730;429731;429732;429733;429734;429735;429736;429737;429738;429739;429740;429741;429742;429743;429744 263840;263841;263842;263843;263844;263845;263846;263847;263848;263849;263850;263851;263852;263853;263854;263855;263856;263857;263858;263859;263860;263861;263862;263863;263864;263865;263866;263867;263868 263858 23 WTLAKPDFVALK Unmodified 1387.7864 0.7863724 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 39.582 37.766 2;3 7.6205E-17 18335 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 217.14 195.11 7115800000 13767000 16837000 13141000 1915800 1494500 1452600 685140000 633510000 637810000 2705900 2266300 2397600 697430000 678340000 636270000 0 0 0 1012300000 947520000 1116900000 4389800 5132200 5133300 23091 1324 22372 429745;429746;429747;429748;429749;429750;429751;429752;429753;429754;429755;429756;429757;429758;429759;429760;429761;429762;429763;429764;429765;429766;429767;429768;429769;429770;429771;429772;429773;429774;429775;429776;429777;429778;429779;429780 263869;263870;263871;263872;263873;263874;263875;263876;263877;263878;263879;263880;263881;263882;263883;263884;263885;263886;263887;263888;263889;263890;263891 263879 23 WTLLQEQGTK Unmodified 1202.6295 0.62953741 14;8 CON__P48668;CON__P02538;CON__P04259;CON__P13647 no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 30.957 29.525 2 3.9082E-09 11361 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 195.17 183.11 113530000 0 0 0 3194800 2561500 2416700 0 0 0 18471000 17220000 16231000 0 0 0 2774600 2303900 2367700 0 0 0 13963000 15850000 16175000 + 23092 8;14 22373 429781;429782;429783;429784;429785;429786;429787;429788;429789;429790;429791;429792 263892;263893;263894;263895;263896;263897;263898;263899;263900;263901;263902;263903 263896 12 WTPDDEMVLNK Unmodified 1346.6177 0.61765209 125 P06616 era GTPase Era yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 34.166 33.082 2 0.0022771 15739 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 72.325 72.325 167400000 0 0 0 0 0 0 0 0 0 3690600 0 0 22771000 21702000 22665000 2121000 1320600 1664800 28287000 29774000 33406000 0 0 0 23093 125 22374 429793;429794;429795;429796;429797;429798;429799;429800;429801;429802 263904;263905;263906;263907 263905 3 WTQPGNIVTNGAYTLK Unmodified 1761.905 0.90498399 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 1 1 2 1 1 37.609 35.876 2;3 1.6268E-13 17368 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 166.7 157.49 2076500000 677010000 568330000 571980000 5807100 5997500 6004100 32354000 34424000 27608000 0 1255100 1340100 23250000 0 21703000 0 0 0 37993000 31170000 30269000 0 0 0 23094 1217 22375 429803;429804;429805;429806;429807;429808;429809;429810;429811;429812;429813;429814;429815;429816;429817;429818;429819;429820;429821;429822;429823;429824;429825 263908;263909;263910;263911;263912;263913;263914;263915;263916;263917;263918;263919;263920;263921;263922;263923;263924 263911 17 WTQPGNIVTNGAYTLKDWVVNER Unmodified 2660.3347 0.33469938 1217 P23843 oppA Periplasmic oligopeptide-binding protein yes yes 0 0 1 By matching By matching By MS/MS 1 1 1 49.695 48.343 3 0.00055077 17323 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 65.425 62.985 8817700 0 0 0 3531100 2610100 2676400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23095 1217 22376 429826;429827;429828 263925 263925 1 WTSQSALDLGEPLSLITESVFAR Unmodified 2519.2908 0.29076888 24 P00350 gnd 6-phosphogluconate dehydrogenase, decarboxylating yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 55.835 54.357 2;3 1.6257E-43 25916 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 279.92 277.43 1130600000 35047000 80300000 37705000 0 0 0 44309000 34550000 60766000 0 0 0 232730000 254730000 81466000 0 0 0 88935000 80737000 99328000 0 0 0 23096 24 22377 429829;429830;429831;429832;429833;429834;429835;429836;429837;429838;429839;429840;429841;429842;429843;429844;429845;429846;429847;429848;429849;429850;429851 263926;263927;263928;263929;263930;263931;263932;263933;263934;263935;263936;263937;263938;263939;263940;263941;263942;263943;263944;263945 263942 20 WTVNLDMPSLSLR Unmodified 1530.7864 0.78644876 1940 P77774 bamB Outer membrane protein assembly factor BamB yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.644 51.467 2 8.4149E-07 20685 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 138.76 130.23 165260000 8654300 0 6114300 0 0 0 6759100 7879000 7222900 9525500 7850200 7729600 15215000 11842000 12222000 0 6298500 6811000 0 23306000 21652000 6179100 0 0 23097 1940 22378 429852;429853;429854;429855;429856;429857;429858;429859;429860;429861;429862;429863;429864;429865;429866;429867 263946;263947;263948 263947 3 WTWPAGENDGSVALLK Unmodified 1742.8628 0.86278482 439 P0A8K1 psd Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes yes 0 0 0 By MS/MS By MS/MS 1 1 48.406 47.055 2 0.0020578 16884 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 64.55 61.931 7442800 0 0 0 3905000 0 3537700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23098 439 22379 429868;429869 263949;263950 263949 2 WVAMGEEYK Unmodified 1111.5008 0.50083142 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 26.198 25.051 2 0.00061972 11099 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.57 102 643150000 56761000 50323000 45670000 0 169800 0 64809000 57153000 60206000 0 0 0 52960000 55470000 52402000 0 0 0 55514000 47230000 44486000 0 0 0 23099 540 22380 429870;429871;429872;429873;429874;429875;429876;429877;429878;429879;429880;429881;429882 263951;263952;263953;263954;263955;263956;263957;263958;263959;263960;263961 263958 10 WVECADAK Unmodified 977.42767 0.42766648 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.668 14.579 2 0.0037331 4328 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 87.435 82.84 427950000 0 28880000 27701000 316310 330440 458830 36859000 41195000 39414000 0 0 0 39197000 0 40374000 0 0 0 59476000 58289000 55456000 0 0 0 23100 346 22381 429883;429884;429885;429886;429887;429888;429889;429890;429891;429892;429893;429894;429895;429896;429897 263962;263963;263964;263965;263966;263967;263968;263969;263970;263971;263972;263973 263972 12 WVEGLTFLGESASGHQILMDGNSGDK Unmodified 2747.2861 0.2860942 816 P0ADX1 yhfA Protein YhfA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 48.975 47.638 3 1.1643E-16 23145 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 156.43 156.28 624990000 62711000 58427000 56537000 0 0 559660 61029000 57741000 54149000 0 0 0 42588000 44565000 33287000 0 0 0 48622000 54992000 49778000 0 0 0 23101 816 22382 429898;429899;429900;429901;429902;429903;429904;429905;429906;429907;429908;429909;429910 263974;263975;263976;263977;263978;263979;263980;263981;263982;263983;263984;263985 263978 12 WVEQGIGCSK Unmodified 1162.5441 0.54409322 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 19.112 19.733 2 0.00022536 7848 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 93.598 68.46 566300000 175050000 156440000 151180000 0 0 183440 0 0 0 0 0 0 0 0 0 0 0 0 0 83442000 0 0 0 0 23102 1465 22383 429911;429912;429913;429914;429915;429916;429917 263986;263987;263988;263989;263990 263986 5 WVGPQMTR Unmodified 973.48037 0.48037075 1784 P75863 ycbX Uncharacterized protein YcbX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 22.767 22.268 2 0.0042983 9790 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 81.119 51.759 87261000 0 0 0 0 0 0 0 0 10017000 0 0 0 14393000 11018000 9638200 0 0 0 18057000 0 24138000 0 0 0 23103 1784 22384 429918;429919;429920;429921;429922;429923;429924;429925;429926;429927;429928 263991;263992;263993;263994;263995;263996;263997;263998;263999;264000;264001 263992 11 WVGVLLSADNK Unmodified 1200.6503 0.65027285 1490 P37745 rfbC dTDP-4-dehydrorhamnose 3,5-epimerase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 38.295 36.853 2 0.00025099 17709 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.965 92.484 102840000 20871000 18215000 17619000 0 0 0 0 0 0 0 0 0 46130000 0 0 0 0 0 0 0 0 0 0 0 23104 1490 22385 429929;429930;429931;429932 264002;264003;264004 264003 3 WVISGVGDMMLHPFHIHGTQFR Unmodified 2564.2569 0.25692352 1439 P36649 cueO Blue copper oxidase CueO yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 46.231 44.797 5 0.0032025 22006 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 54.117 53.088 72316000 10939000 13969000 11628000 0 0 0 9417700 0 0 0 0 0 0 6176700 4062800 0 0 0 9418800 0 6704300 0 0 0 23105 1439 22386 429933;429934;429935;429936;429937;429938;429939;429940 264005;264006 264005 2 WVLASRPHGAPVPENFR Unmodified 1932.0118 0.011849096 1817 P76113 curA NADPH-dependent curcumin reductase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 27.251 25.989 4 0.017805 12174 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 42.947 40.585 69466000 14740000 16805000 13822000 0 0 0 8147700 7308900 8641500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23106 1817 22387 429941;429942;429943;429944;429945;429946 264007 264007 0 WVLAVAGTHGK Unmodified 1137.6295 0.62947783 1500 P37773 mpl UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 23.407 22.587 2;3 0.00022005 9227 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 118.18 116.56 796580000 43355000 39515000 37612000 0 0 0 60825000 68993000 71378000 2134000 1243500 1646900 80051000 67808000 65709000 0 0 0 80734000 83126000 92449000 0 0 0 23107 1500 22388 429947;429948;429949;429950;429951;429952;429953;429954;429955;429956;429957;429958;429959;429960;429961;429962;429963;429964;429965;429966;429967;429968;429969;429970;429971;429972;429973 264008;264009;264010;264011;264012;264013;264014;264015;264016;264017;264018;264019;264020;264021;264022;264023;264024 264021 15 WVLVELGGNDGLR Unmodified 1426.7569 0.75686319 776 P0ADA1 tesA Acyl-CoA thioesterase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 48.338 46.983 2 4.6079E-06 22858 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 128.81 119.12 70394000 21369000 20348000 17785000 0 0 0 10892000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23108 776 22389 429974;429975;429976;429977 264025;264026;264027 264026 3 WVMEQTQCDGFR Unmodified 1555.6548 0.65478266 1282 P26612 amyA Cytoplasmic alpha-amylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 31.693 30.363 2 0.00037202 14302 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.3 112.3 219960000 30982000 34347000 36870000 0 0 0 28593000 29986000 0 0 0 0 8904100 0 12545000 0 0 0 0 22819000 14910000 0 0 0 23109 1282 22390 429978;429979;429980;429981;429982;429983;429984;429985;429986 264028;264029;264030;264031;264032;264033;264034;264035;264036 264032 0 WVNALVSELNDK Unmodified 1386.7143 0.71432967 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.558 39.709 2 4.3055E-08 18517 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 157.78 156.58 325620000 26836000 27680000 27497000 0 0 0 23782000 20683000 22199000 1291700 1321700 2054500 26744000 22243000 23020000 0 0 0 35123000 34530000 30613000 0 0 0 23110 883 22391 429987;429988;429989;429990;429991;429992;429993;429994;429995;429996;429997;429998;429999;430000;430001 264037;264038;264039;264040;264041;264042;264043;264044;264045;264046;264047;264048 264047 12 WVNALVSELNDKEQHGSQWK Unmodified 2367.1608 0.16075776 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 34.213 32.735 3;4 1.2996E-37 15639 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 233.63 221.14 2517200000 159510000 188310000 174570000 13538000 12649000 11698000 163070000 168740000 155830000 86509000 81825000 71932000 141000000 135780000 147900000 31801000 24962000 28723000 205910000 214570000 174030000 44965000 36870000 42488000 23111 883 22392 430002;430003;430004;430005;430006;430007;430008;430009;430010;430011;430012;430013;430014;430015;430016;430017;430018;430019;430020;430021;430022;430023;430024;430025;430026;430027;430028;430029;430030;430031;430032;430033;430034;430035;430036;430037;430038;430039;430040;430041;430042;430043;430044;430045;430046;430047;430048;430049 264049;264050;264051;264052;264053;264054;264055;264056;264057;264058;264059;264060;264061;264062;264063;264064;264065;264066;264067;264068;264069;264070;264071;264072;264073;264074;264075;264076;264077;264078;264079;264080;264081;264082;264083;264084;264085;264086 264072 38 WVPQVFVASGDCAER Unmodified 1719.8039 0.80388973 262 P0A6M2 dsbB Disulfide bond formation protein B yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 41.35 39.727 2 7.9091E-06 18580 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 97.214 90.681 28546000 0 0 0 0 0 0 0 3922500 0 0 0 0 3534700 3220100 3632200 0 0 0 4181200 3947200 6107900 0 0 0 23112 262 22393 430050;430051;430052;430053;430054;430055;430056 264087 264087 1 WVQSNLKPLDINEK Unmodified 1682.8992 0.89917033 41 P00811 ampC Beta-lactamase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.307 28.1 3 0.010634 13041 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 48.527 46.91 65057000 8002400 8067900 6043400 0 0 0 0 6591300 4206500 0 0 0 3576100 3713400 4753200 0 0 0 5867500 8461100 5773800 0 0 0 23113 41 22394 430057;430058;430059;430060;430061;430062;430063;430064;430065;430066;430067 264088;264089;264090;264091 264089 4 WVSAEEILQASNLR Unmodified 1614.8366 0.83657007 864 P0AEI6 nudJ Phosphatase NudJ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 49.445 48.069 2 2.3224E-14 23443 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 185.99 159.21 83480000 14018000 13422000 9873300 0 0 0 9279200 4861900 0 0 0 0 10374000 0 9568600 0 0 0 0 12083000 0 0 0 0 23114 864 22395 430068;430069;430070;430071;430072;430073;430074;430075 264092;264093 264093 1 WVSLPGEGGHVDFAPNSEEEAIILEILR Unmodified 3076.5506 0.55056539 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.21 53.737 3 9.5252E-23 26700 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 165.46 163.26 963530000 46344000 38687000 56591000 0 0 0 111100000 98322000 89032000 0 0 0 95927000 97464000 82118000 0 0 0 88497000 78037000 81411000 0 0 0 23115 285 22396 430076;430077;430078;430079;430080;430081;430082;430083;430084;430085;430086;430087 264094;264095;264096;264097;264098;264099 264094 5 WVYQGLCGLEK Unmodified 1351.6595 0.65945733 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.442 36.747 2 0.00025034 18109 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 98.048 93.894 655340000 5006700 0 4948800 371770 0 0 109320000 113840000 105620000 5168400 5520400 5606200 56856000 64416000 57220000 0 1407000 1494600 39510000 35478000 37779000 2078400 1615500 2093300 23116 506 22397 430088;430089;430090;430091;430092;430093;430094;430095;430096;430097;430098;430099;430100;430101;430102;430103;430104;430105;430106;430107 264100;264101;264102;264103;264104;264105;264106;264107;264108;264109 264103 7 WWDLEGEFKPLHR Unmodified 1711.8471 0.84707518 1146 P17993 ubiG Ubiquinone biosynthesis O-methyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 2 2 2 2 2 2 2 3 1 1 1 2 2 3 2 2 2 40.848 39.101 2;3;4 1.2861E-05 19548 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 83.182 81.931 911160000 49687000 37880000 41376000 7233400 11781000 14345000 84048000 94393000 99238000 15323000 14686000 14433000 64255000 48962000 0 3541500 3872600 3414900 85194000 103300000 86529000 9455300 8951500 9259600 23117 1146 22398 430108;430109;430110;430111;430112;430113;430114;430115;430116;430117;430118;430119;430120;430121;430122;430123;430124;430125;430126;430127;430128;430129;430130;430131;430132;430133;430134;430135;430136;430137;430138;430139;430140;430141;430142;430143;430144;430145;430146;430147;430148;430149 264110;264111;264112;264113;264114;264115;264116;264117;264118;264119;264120;264121;264122;264123;264124;264125;264126;264127;264128;264129;264130;264131;264132;264133;264134;264135;264136;264137;264138;264139;264140;264141 264118 26 WWEESEALEPESR Unmodified 1646.7213 0.72126554 615 P0AAV4 ybgJ Uncharacterized protein YbgJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 37.606 35.971 2 7.0419E-07 17284 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 141.88 135.78 129850000 22445000 25822000 21283000 0 0 0 10431000 11672000 0 0 0 0 5902000 4054800 5045900 0 0 0 9411900 7401700 6384400 0 0 0 23118 615 22399 430150;430151;430152;430153;430154;430155;430156;430157;430158;430159;430160 264142;264143;264144;264145;264146 264146 2 WWTVGIR Unmodified 916.49192 0.49192172 77 P02943 lamB Maltoporin yes yes 0 0 0 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 39.681 37.983 2 0.014119 18519 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 83.087 62.227 19465000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1604500 0 0 0 6226300 5578000 5532200 0 524280 0 23119 77 22400 430161;430162;430163;430164;430165 264147 264147 1 WWTVGIRPMYK Unmodified 1435.7435 0.74346173 77 P02943 lamB Maltoporin yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 37.88 36.726 3 0.0079609 14489 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 58.37 53.054 28826000 0 0 0 0 0 0 0 0 0 0 0 3631000 0 0 0 3425800 2547000 3058000 0 0 0 5523100 5189500 5451100 23120 77 22401 430166;430167;430168;430169;430170;430171;430172 264148;264149;264150;264151;264152 264151 5 WYAEAIDK Unmodified 994.476 0.47599688 1225 P23883 puuC Aldehyde dehydrogenase PuuC yes yes 0 0 0 By MS/MS By MS/MS 1 1 23.779 23.075 2 0.046152 9977 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 60.59 55.834 22529000 9314100 0 13215000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23121 1225 22402 430173;430174 264153;264154 264154 2 WYEDGTLNLAANCLDR Unmodified 1909.8629 0.86286118 1305 P27550 acs Acetyl-coenzyme A synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 2 1 44.795 43.382 2;3 1.0588E-30 20955 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 234.79 229.3 567270000 214090000 184690000 165620000 1570300 0 1298800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23122 1305 22403 430175;430176;430177;430178;430179;430180;430181;430182;430183;430184;430185 264155;264156;264157;264158;264159;264160;264161;264162;264163 264161 8 WYGPNDPVSLADVR Unmodified 1587.7682 0.76815616 1244 P24215 uxuA Mannonate dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.031 40.332 2 4.8368E-08 20036 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 144.65 138.21 703890000 98868000 95085000 85509000 0 0 0 52358000 50615000 51455000 0 0 0 50069000 35221000 46433000 0 0 0 45951000 46999000 45324000 0 0 0 23123 1244 22404 430186;430187;430188;430189;430190;430191;430192;430193;430194;430195;430196;430197 264164;264165;264166;264167;264168;264169;264170;264171;264172;264173;264174;264175 264165 12 WYHEGLDAFEHTCPTGR Unmodified 2074.8956 0.89555829 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 2 1 2 2 2 3 4 3 3 3 2 5 4 4 3 3 3 2 5 5 28.879 27.644 2;3;4 4.8973E-31 10480 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 263.89 263.89 17484000000 72490000 68846000 62425000 1038300 1954900 1545200 75169000 76239000 76752000 1852300000 2002300000 1571800000 69281000 78874000 62101000 3062100000 2107200000 2207600000 99918000 104010000 101930000 1229600000 1306600000 1192200000 23124 1616 22405 430198;430199;430200;430201;430202;430203;430204;430205;430206;430207;430208;430209;430210;430211;430212;430213;430214;430215;430216;430217;430218;430219;430220;430221;430222;430223;430224;430225;430226;430227;430228;430229;430230;430231;430232;430233;430234;430235;430236;430237;430238;430239;430240;430241;430242;430243;430244;430245;430246;430247;430248;430249;430250;430251;430252;430253;430254;430255;430256;430257;430258;430259;430260;430261;430262;430263;430264;430265;430266;430267 264176;264177;264178;264179;264180;264181;264182;264183;264184;264185;264186;264187;264188;264189;264190;264191;264192;264193;264194;264195;264196;264197;264198;264199;264200;264201;264202;264203;264204;264205;264206;264207;264208;264209;264210;264211;264212;264213;264214;264215;264216;264217;264218;264219;264220;264221;264222;264223;264224;264225;264226;264227;264228;264229;264230 264203 53 WYLFLAKR Unmodified 1095.6229 0.62293589 601 P0AAM1 hyaC Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit yes yes 0 0 1 By MS/MS 1 9.7362 10.69 3 0.16503 2224 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 12.527 5.1552 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23125 601 22406 430268 264231 264231 1 WYLVAHPGVSIPTPVIFKDPELPR Unmodified 2730.4897 0.48974346 1647 P62615 ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 50.503 49.1 3 0.00013034 24043 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 77.045 74.851 31481000 0 8680100 6123900 0 0 0 0 5649200 0 0 0 0 0 2980500 0 0 0 0 2901100 0 5146700 0 0 0 23126 1647 22407 430269;430270;430271;430272;430273;430274 264232 264232 1 WYPEFFR Unmodified 1043.4865 0.48650199 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.075 43.654 2 0.0010668 21264 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 137.44 125.72 925870000 24249000 19457000 22815000 10170000 11943000 9540000 85413000 73541000 64394000 48536000 53293000 47428000 50620000 44275000 40969000 9002200 7489600 8514200 74392000 73313000 68011000 26414000 26667000 25427000 23127 930 22408 430275;430276;430277;430278;430279;430280;430281;430282;430283;430284;430285;430286;430287;430288;430289;430290;430291;430292;430293;430294;430295;430296;430297;430298 264233;264234;264235;264236;264237;264238;264239;264240;264241;264242;264243;264244;264245;264246;264247;264248;264249;264250;264251;264252;264253;264254 264243 22 WYQQLTER Unmodified 1122.5458 0.54580778 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.601 22.879 2 0.00022699 9413 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 151.29 151.29 714210000 122620000 115690000 95450000 0 0 0 59801000 50189000 52288000 0 0 0 30620000 33302000 34748000 0 0 0 35649000 39486000 44363000 0 0 0 23128 713 22409 430299;430300;430301;430302;430303;430304;430305;430306;430307;430308;430309;430310 264255;264256;264257;264258;264259;264260 264260 6 WYQQLTERPAVR Unmodified 1545.8052 0.80521036 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 23.199 22.425 2 4.6166E-08 9543 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 166.34 139.82 58845000 10861000 13964000 10866000 0 0 0 5476700 4280000 4284800 0 0 0 2284300 0 0 0 0 0 3216500 3611100 0 0 0 0 23129 713 22410 430311;430312;430313;430314;430315;430316;430317;430318;430319 264261;264262;264263;264264;264265 264264 5 WYSQSGTPIVTVK Unmodified 1464.7613 0.76127986 94 P04825 pepN Aminopeptidase N yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.565 30.209 2 3.228E-06 14482 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 155.15 140.94 3034400000 339860000 334480000 313200000 0 0 0 288560000 272820000 247080000 0 0 0 202050000 162890000 177450000 0 0 0 239340000 235750000 220920000 0 0 0 23130 94 22411 430320;430321;430322;430323;430324;430325;430326;430327;430328;430329;430330;430331 264266;264267;264268;264269;264270;264271;264272;264273;264274 264267 9 WYTTGPVGLLTRPFIK Unmodified 1848.0298 0.029790571 1095 P14176 proW Glycine betaine/L-proline transport system permease protein ProW yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 48.915 47.821 3 1.8448E-05 19156 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 87.148 83.913 125410000 0 0 0 10143000 8138700 8087400 0 2133000 0 17787000 18173000 13982000 0 0 0 4962600 2707000 2928800 0 0 0 10045000 15976000 10349000 23131 1095 22412 430332;430333;430334;430335;430336;430337;430338;430339;430340;430341;430342;430343;430344 264275;264276;264277;264278;264279;264280;264281;264282;264283;264284;264285 264279 11 WYVVQAFSGFEGR Unmodified 1544.7412 0.74121312 936 P0AFG0 nusG Transcription termination/antitermination protein NusG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1 1 4 3 4 1 2 1 4 6 4 1 1 1 3 3 3 51.52 50.494 2;3 7.7718E-24 19783 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 233.45 228.14 26588000000 35965000 0 23091000 24053000 23402000 22581000 27507000 28551000 27451000 4811400000 5796800000 5781300000 41148000 38753000 38626000 801860000 815700000 843220000 55994000 54881000 51760000 2416400000 2373100000 2454900000 23132 936 22413 430345;430346;430347;430348;430349;430350;430351;430352;430353;430354;430355;430356;430357;430358;430359;430360;430361;430362;430363;430364;430365;430366;430367;430368;430369;430370;430371;430372;430373;430374;430375;430376;430377;430378;430379;430380;430381;430382;430383;430384;430385;430386;430387;430388;430389;430390;430391;430392;430393;430394;430395 264286;264287;264288;264289;264290;264291;264292;264293;264294;264295;264296;264297;264298;264299;264300;264301;264302;264303;264304;264305;264306;264307;264308;264309;264310;264311;264312;264313;264314;264315;264316;264317;264318;264319;264320;264321;264322;264323;264324;264325;264326;264327;264328;264329;264330;264331;264332;264333;264334;264335;264336;264337;264338;264339;264340;264341;264342;264343;264344;264345 264321 53 YAAANNLSVIGATK Unmodified 1391.7409 0.74087877 673 P0ABR1 dinI DNA-damage-inducible protein I yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 27.387 26.43 2 6.3353E-06 12093 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 110.93 104.63 71128000 7329800 7727600 8595000 0 0 0 0 0 0 0 0 0 8438000 8289000 6125700 0 0 0 0 14680000 9942700 0 0 0 23133 673 22414 430396;430397;430398;430399;430400;430401;430402;430403 264346;264347;264348 264346 3 YAAEDADVTLQLHLK Unmodified 1685.8625 0.86245047 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By matching By MS/MS By MS/MS 1 1 1 1 33.133 32.848 3 0.0014308 11070 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 63.894 62.528 39905000 0 19188000 0 0 0 0 0 0 0 0 0 0 0 0 0 6564300 6984300 7168100 0 0 0 0 0 0 23134 37 22415 430404;430405;430406;430407 264349;264350 264350 1 YAAEHATDEQIDLLAK Unmodified 1786.8737 0.87374344 465 P0A8W0 nanR Transcriptional regulator NanR yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.224 26.938 3 3.3705E-05 12346 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 59.634 56.737 112520000 13251000 14538000 16378000 0 0 620680 10549000 9082900 5947300 0 1148600 1838000 5418300 7133800 7203400 0 0 0 0 10476000 8934500 0 0 0 23135 465 22416 430408;430409;430410;430411;430412;430413;430414;430415;430416;430417;430418;430419;430420;430421 264351;264352;264353 264352 3 YAAEHNIIVVAPDTSPR Unmodified 1851.9479 0.94791144 1595 P51025 frmB S-formylglutathione hydrolase FrmB yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 27.037 25.881 2;3 9.9689E-11 11807 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 150.12 141.16 631530000 17475000 22986000 19503000 0 0 0 86400000 77317000 83709000 0 0 0 45610000 40964000 43435000 0 0 0 69099000 65016000 60019000 0 0 0 23136 1595 22417 430422;430423;430424;430425;430426;430427;430428;430429;430430;430431;430432;430433;430434;430435;430436;430437;430438;430439;430440;430441;430442;430443;430444 264354;264355;264356;264357;264358;264359;264360;264361;264362;264363;264364;264365;264366;264367 264360 14 YAALCDVFVMDAFGTAHR Oxidation (M) 2058.9292 0.9291666 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 3 2 3 2 2 3 3 2 2 3 46.896 45.477 3 1.2075E-06 23027 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 94.922 94.922 305090000 20495000 10283000 31518000 0 0 0 43038000 36079000 33490000 0 0 0 16342000 24812000 21123000 0 0 0 21511000 21091000 25312000 0 0 0 23137 321 22418 430445;430446;430447;430448;430449;430450;430451;430452;430453;430454;430455;430456;430457;430458;430459;430460;430461;430462;430463;430464;430465;430466;430467;430468;430469;430470;430471;430472 264368;264369;264370;264371;264372;264373;264374;264375;264376;264377;264378;264379;264380;264381 264369 149 13 YAALCDVFVMDAFGTAHR Unmodified 2042.9343 0.93425198 321 P0A799 pgk Phosphoglycerate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 4 1 1 1 5 3 4 1 1 1 6 4 5 4 4 4 1 52.515 51.164 2;3 6.2545E-38 24099 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 311.71 306.33 18732000000 1142100000 1237000000 1093200000 7622500 7843400 6560300 2165700000 2190500000 2192200000 10875000 6266800 5493700 1265100000 1250100000 1264400000 0 0 0 1661800000 1628000000 1596400000 1204800 0 0 23138 321 22418 430473;430474;430475;430476;430477;430478;430479;430480;430481;430482;430483;430484;430485;430486;430487;430488;430489;430490;430491;430492;430493;430494;430495;430496;430497;430498;430499;430500;430501;430502;430503;430504;430505;430506;430507;430508;430509;430510;430511;430512;430513;430514;430515;430516;430517;430518;430519;430520;430521;430522;430523;430524;430525;430526;430527;430528;430529;430530;430531 264382;264383;264384;264385;264386;264387;264388;264389;264390;264391;264392;264393;264394;264395;264396;264397;264398;264399;264400;264401;264402;264403;264404;264405;264406;264407;264408;264409;264410;264411;264412;264413;264414;264415;264416;264417;264418;264419;264420;264421;264422;264423;264424;264425;264426;264427;264428;264429;264430;264431;264432;264433;264434;264435;264436;264437;264438;264439;264440;264441;264442;264443;264444;264445;264446;264447;264448;264449;264450;264451;264452;264453 264413 67 YAALQQSSLFR Unmodified 1282.667 0.66698555 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.157 31.696 2 3.8663E-14 12058 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 206.78 202.09 440380000 3848700 4521600 3694700 4226500 4044400 4029800 15347000 15196000 13476000 13572000 12178000 14546000 15979000 16440000 14447000 4566100 3334200 3956900 58280000 58194000 58318000 36385000 31732000 30072000 23139 1435 22419 430532;430533;430534;430535;430536;430537;430538;430539;430540;430541;430542;430543;430544;430545;430546;430547;430548;430549;430550;430551;430552;430553;430554;430555 264454;264455;264456;264457;264458;264459;264460;264461;264462;264463 264456 8 YAALTGSELSMTFNFHHLK Unmodified 2166.0568 0.056809957 1324 P28904 treC Trehalose-6-phosphate hydrolase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 3 3 3 3 3 3 3 38.827 37.088 2;3;4 1.1257E-17 17300 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 164.62 160.09 2662700000 0 2117100 0 0 0 0 278900000 260120000 283320000 0 0 0 260280000 213250000 238500000 0 0 0 408790000 369920000 347440000 0 0 0 23140 1324 22420 430556;430557;430558;430559;430560;430561;430562;430563;430564;430565;430566;430567;430568;430569;430570;430571;430572;430573;430574;430575;430576;430577;430578;430579;430580;430581;430582;430583 264464;264465;264466;264467;264468;264469;264470;264471;264472;264473;264474;264475;264476;264477;264478;264479;264480;264481;264482;264483 264478 20 YACGVIK Unmodified 809.41056 0.41055985 1007 P0AGD1 sodC Superoxide dismutase [Cu-Zn] yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 14.205 14.966 2 0.019434 4924 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 77.72 66.158 793480000 224470000 223160000 191110000 0 0 0 0 78029000 62686000 0 0 0 0 0 0 0 0 0 0 14026000 0 0 0 0 23141 1007 22421 430584;430585;430586;430587;430588;430589 264484 264484 1 YADAPAMHVAHR Unmodified 1337.6299 0.62988854 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 12.356 13.142 2;3 7.4913E-09 3744 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 209.6 177.84 418380000 148030000 129170000 131290000 0 0 0 0 0 0 0 0 0 0 0 7392900 0 0 0 0 0 2500900 0 0 0 23142 1412 22422 430590;430591;430592;430593;430594;430595;430596;430597;430598 264485;264486;264487;264488;264489;264490 264489 6 YADEVVR Unmodified 850.41848 0.418482 987 P0AG55 rplF 50S ribosomal protein L6 yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 13.708 14.323 2 0.00014163 3319 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 170.43 110.82 4288300000 417460000 461760000 378660000 22830000 20970000 20466000 220930000 201330000 193720000 62474000 52816000 48281000 293310000 323950000 247050000 16066000 17240000 16240000 403310000 357410000 379220000 47196000 43969000 41636000 23143 987 22423 430599;430600;430601;430602;430603;430604;430605;430606;430607;430608;430609;430610;430611;430612;430613;430614;430615;430616;430617;430618;430619;430620;430621;430622;430623 264491;264492;264493;264494;264495;264496;264497;264498;264499;264500;264501;264502;264503;264504;264505;264506 264500 16 YADGISVVR Unmodified 978.51345 0.51344502 1311 P27836 wecG UDP-N-acetyl-D-mannosaminuronic acid transferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 22.643 21.984 2 0.080193 9340 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 52.937 39.67 56667000 0 0 0 0 0 0 7096800 3778100 3725100 0 2990000 0 3613400 3826500 3305300 0 0 0 9226500 9734400 9370400 0 0 0 23144 1311 22424 430624;430625;430626;430627;430628;430629;430630;430631;430632;430633 264507 264507 0 YADMLAMSAK Oxidation (M) 1115.4991 0.49911686 397 P0A853 tnaA Tryptophanase yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 5 5 4 1 1 3 4 4 3 4 4 3 4 3 21.049 21.252 2 0.0023679 9378 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 82.287 76.628 516020000 80736000 83084000 82259000 380790 0 254050 49831000 55948000 44997000 0 0 0 18859000 17809000 16529000 0 0 0 21580000 24344000 19409000 0 0 0 23145 397 22425 430634;430635;430636;430637;430638;430639;430640;430641;430642;430643;430644;430645;430646;430647;430648;430649;430650;430651;430652;430653;430654;430655;430656;430657;430658;430659;430660;430661;430662;430663;430664;430665;430666;430667;430668;430669;430670;430671;430672;430673;430674;430675;430676;430677;430678;430679;430680;430681 264508;264509;264510;264511;264512;264513;264514;264515;264516;264517;264518;264519;264520;264521;264522;264523;264524;264525;264526 264514 190;191 16 YADMLAMSAK Unmodified 1099.5042 0.50420224 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.981 27.686 2 0.00012278 12759 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 128.38 125.29 11595000000 1925100000 1967000000 1993000000 14159000 13933000 14950000 913960000 904830000 855530000 0 0 0 515180000 507750000 476610000 0 0 0 504000000 504310000 484780000 0 0 0 23146 397 22425 430682;430683;430684;430685;430686;430687;430688;430689;430690;430691;430692;430693;430694;430695;430696 264527;264528;264529;264530;264531;264532;264533;264534;264535;264536;264537;264538;264539;264540;264541;264542;264543 264531 17 YADMLAMSAK 2 Oxidation (M) 1131.494 0.49403148 397 P0A853 tnaA Tryptophanase yes yes 0 2 0 By matching By MS/MS 1 1 14.243 14.995 2 0.054666 4946 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 40.882 31.937 4708400 0 0 2324500 0 0 0 2383900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23147 397 22425 430697;430698 264544 264544 190;191 0 YADQPAFVNMGEVMTFR Unmodified 1974.8968 0.89680384 1734 P69451 fadD Long-chain-fatty-acid--CoA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.817 50.594 2 2.0421E-08 24892 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.15 112.15 69948000 13020000 12684000 10212000 699580 781420 0 3039500 0 0 0 0 0 3891300 4987600 3074700 0 0 0 5786400 5877900 5893400 0 0 0 23148 1734 22426 430699;430700;430701;430702;430703;430704;430705;430706;430707;430708;430709;430710 264545 264545 1 YADVGSFDYGR Unmodified 1248.5411 0.54111633 74 P02931 ompF Outer membrane protein F yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.246 27.765 2 9.0155E-05 12913 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 121.73 96.174 107180000 9344600 6248600 7571100 4246100 4355500 4091000 0 2155900 2048000 7992900 7120600 6373000 2355700 3572900 2163700 0 0 0 7399200 8050500 8705900 4202900 4130800 5049200 23149 74 22427 430711;430712;430713;430714;430715;430716;430717;430718;430719;430720;430721;430722;430723;430724;430725;430726;430727;430728;430729;430730 264546;264547 264547 2 YADYLPFK Unmodified 1015.5015 0.50148335 1256 P25522 mnmE tRNA modification GTPase MnmE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 37.018 35.504 2 0.010882 17213 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 77.674 71.22 199000000 26851000 19926000 24390000 0 0 0 0 0 0 0 0 0 16871000 16762000 18195000 0 0 0 22547000 25057000 28400000 0 0 0 23150 1256 22428 430731;430732;430733;430734;430735;430736;430737;430738;430739 264548;264549;264550;264551;264552;264553;264554;264555;264556 264548 9 YADYQQIQFNHDK Unmodified 1668.7532 0.75323437 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 21.852 21.711 2;3 2.0309E-12 8987 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 191.33 187.57 1642400000 180950000 159230000 139360000 726460 0 3447200 139620000 127990000 137400000 27629000 24702000 14284000 90294000 87890000 96444000 4873700 3679400 5160200 124860000 123970000 122410000 9468900 8206200 9809500 23151 1408 22429 430740;430741;430742;430743;430744;430745;430746;430747;430748;430749;430750;430751;430752;430753;430754;430755;430756;430757;430758;430759;430760;430761;430762;430763;430764;430765;430766;430767;430768;430769;430770;430771;430772;430773;430774;430775;430776;430777;430778;430779;430780;430781 264557;264558;264559;264560;264561;264562;264563;264564;264565;264566;264567;264568;264569;264570;264571;264572;264573;264574;264575;264576;264577;264578;264579;264580;264581;264582;264583;264584;264585;264586 264576 29 YAEAQHDAYNPFDTEQLVICSLDFAR Unmodified 3072.3924 0.39235019 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 3 3 1 1 3 3 3 1 2 1 3 3 3 54.628 53.542 2;3;4 1.2706E-111 20358 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 420.12 416.28 8369600000 36189000 33839000 28139000 0 0 0 0 19309000 29932000 630570000 675180000 450720000 0 29488000 34713000 1535100000 1782400000 1842800000 42887000 44274000 36598000 399150000 363060000 355230000 23152 1616 22430 430782;430783;430784;430785;430786;430787;430788;430789;430790;430791;430792;430793;430794;430795;430796;430797;430798;430799;430800;430801;430802;430803;430804;430805;430806;430807;430808;430809;430810;430811;430812;430813;430814;430815;430816;430817;430818 264587;264588;264589;264590;264591;264592;264593;264594;264595;264596;264597;264598;264599;264600;264601;264602;264603;264604;264605;264606 264592 20 YAEFIGK Unmodified 826.4225 0.42250475 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.03 21.292 2 0.022682 8359 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 74.439 31.72 1052800000 212370000 173980000 157420000 2503400 2654500 2194700 124670000 118040000 131310000 0 1652300 0 23718000 18633000 17510000 0 0 0 20161000 25674000 20263000 0 0 0 23153 757 22431 430819;430820;430821;430822;430823;430824;430825;430826;430827;430828;430829;430830;430831;430832;430833;430834 264607;264608;264609;264610;264611;264612;264613;264614;264615;264616;264617;264618;264619;264620 264616 14 YAEGYPGK Unmodified 883.40758 0.40758296 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 12.341 13.173 2 0.0037473 3800 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.55 80.079 4708600000 736370000 691300000 688870000 0 0 0 293230000 348910000 310170000 0 0 0 269770000 233670000 247040000 0 0 0 330430000 292630000 266240000 0 0 0 23154 391 22432 430835;430836;430837;430838;430839;430840;430841;430842;430843;430844;430845;430846 264621;264622;264623;264624;264625;264626;264627;264628;264629;264630;264631;264632 264625 12 YAEIADHLGLSAPGDR Unmodified 1683.8216 0.82164829 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 31.426 29.938 2;3 3.8757E-61 14210 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 294.69 247.98 7568300000 649660000 586310000 535380000 132180000 129710000 117030000 913060000 861210000 873970000 122790000 119040000 107940000 319760000 330370000 293160000 6380800 5498300 4573900 365570000 347620000 327200000 129430000 145430000 145060000 23155 548 22433 430847;430848;430849;430850;430851;430852;430853;430854;430855;430856;430857;430858;430859;430860;430861;430862;430863;430864;430865;430866;430867;430868;430869;430870;430871;430872;430873;430874;430875;430876;430877;430878;430879;430880;430881;430882;430883;430884;430885;430886;430887;430888;430889;430890;430891 264633;264634;264635;264636;264637;264638;264639;264640;264641;264642;264643;264644;264645;264646;264647;264648;264649;264650;264651;264652;264653;264654;264655;264656;264657;264658;264659;264660;264661;264662;264663;264664;264665;264666 264640 31 YAEIASGDLGYVPDALGCVLK Unmodified 2210.0929 0.092920692 440 P0A8K5 yaeP UPF0253 protein YaeP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 1 2 2 53.74 52.308 2;3 4.0519E-35 25862 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 223.06 220.77 639600000 99238000 90039000 97632000 0 0 0 48677000 59501000 58720000 0 0 0 38709000 42898000 38178000 0 0 0 9117500 28703000 28186000 0 0 0 23156 440 22434 430892;430893;430894;430895;430896;430897;430898;430899;430900;430901;430902;430903;430904;430905;430906;430907;430908;430909;430910;430911;430912;430913 264667;264668;264669;264670;264671;264672;264673;264674;264675;264676;264677;264678;264679;264680;264681 264672 15 YAELSVAGGPFATLLAHR Unmodified 1871.9894 0.98938232 1328 P29018 cydD ATP-binding/permease protein CydD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 49.581 48.191 3 7.3224E-06 23240 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 88.133 85.272 23377000 0 0 2810700 0 0 1506100 0 0 0 2347200 2739200 0 0 0 0 0 0 0 4930000 5166000 3877900 0 0 0 23157 1328 22435 430914;430915;430916;430917;430918;430919;430920 264682 264682 1 YAFAYGADAVYAGQPR Unmodified 1718.8053 0.80526994 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.539 35.872 2 7.2517E-10 17289 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 135.66 130.06 150560000 11666000 11525000 10956000 736310 0 0 15073000 11203000 0 0 0 0 9704800 12091000 13168000 0 0 0 16325000 18497000 18895000 0 719170 0 23158 1856 22436 430921;430922;430923;430924;430925;430926;430927;430928;430929;430930;430931;430932;430933 264683;264684;264685;264686;264687;264688 264687 3 YAFSTLCLFR Unmodified 1276.6274 0.62742892 1441 P36667 wbbL Rhamnosyltransferase WbbL yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 50.056 48.649 2 0.079736 19202 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 47.198 28.861 8998200 0 0 0 365500 0 0 0 0 0 0 2229300 1391900 0 0 0 0 0 0 0 0 0 0 1982300 3029100 23159 1441 22437 430934;430935;430936;430937;430938 264689 264689 0 YAGGAEENAPLHK Unmodified 1355.647 0.64697839 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.31 12.857 3 0.00060601 2827 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 53.967 53.725 182840000 18419000 22533000 19630000 0 0 0 16709000 14740000 0 1585800 1250100 954320 15128000 7714700 8870600 3218700 3400400 3790200 16336000 11995000 13717000 1588100 1259800 0 23160 1355 22438 430939;430940;430941;430942;430943;430944;430945;430946;430947;430948;430949;430950;430951;430952;430953;430954;430955;430956;430957 264690;264691 264690 2 YAGHDFFVK Unmodified 1082.5185 0.5185304 1936 P77739 yniA Uncharacterized protein YniA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 1 2 2 2 2 2 1 2 20.931 21.279 2;3 0.00034096 8332 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 114.28 100.12 431500000 77588000 64432000 62736000 605980 510370 0 46835000 32011000 51588000 0 0 0 18451000 17386000 18542000 0 0 0 13661000 10861000 16298000 0 0 0 23161 1936 22439 430958;430959;430960;430961;430962;430963;430964;430965;430966;430967;430968;430969;430970;430971;430972;430973;430974;430975;430976;430977;430978;430979;430980;430981 264692;264693;264694;264695;264696;264697 264696 6 YAGHTASDEVFEK Unmodified 1452.6521 0.65212334 398 P0A855 tolB Protein TolB yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 14.71 15.268 2;3 1.4769E-17 4941 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 223.78 218.29 1242500000 120120000 102320000 117360000 11619000 12557000 13983000 60184000 54750000 48964000 25561000 21159000 23324000 82940000 69819000 69816000 7588200 5222900 4108300 118670000 103050000 119370000 17129000 15767000 17128000 23162 398 22440 430982;430983;430984;430985;430986;430987;430988;430989;430990;430991;430992;430993;430994;430995;430996;430997;430998;430999;431000;431001;431002;431003;431004;431005;431006;431007;431008;431009;431010;431011;431012;431013;431014;431015;431016;431017;431018;431019;431020;431021;431022;431023;431024 264698;264699;264700;264701;264702;264703;264704;264705;264706;264707;264708;264709;264710;264711;264712;264713;264714;264715;264716;264717;264718;264719;264720;264721;264722;264723;264724;264725 264713 28 YAGLIFDMDGTILDTEPTHR Unmodified 2264.0783 0.078333261 1908 P77475 yqaB Fructose-1-phosphate phosphatase YqaB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.699 50.596 3 3.2487E-18 24603 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 163.35 152.21 204040000 8119500 0 7077900 0 0 796090 21722000 21470000 19056000 3216200 3101400 3585000 19691000 19914000 0 1969600 1160700 1998400 25895000 22249000 21698000 0 1314700 0 23163 1908 22441 431025;431026;431027;431028;431029;431030;431031;431032;431033;431034;431035;431036;431037;431038;431039;431040;431041;431042 264726;264727;264728;264729;264730 264729 5 YAGLSEQALYYIGGVIK Unmodified 1843.972 0.97200092 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.027 52.588 2;3 6.3528E-19 25660 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 192.68 183.94 2046500000 251130000 251580000 220750000 0 0 0 195450000 156240000 154170000 0 0 0 130650000 115860000 104840000 0 0 0 153170000 157820000 154870000 0 0 0 23164 508 22442 431043;431044;431045;431046;431047;431048;431049;431050;431051;431052;431053;431054;431055;431056;431057;431058;431059;431060;431061;431062;431063;431064;431065;431066 264731;264732;264733;264734;264735;264736;264737;264738;264739;264740;264741;264742;264743;264744;264745;264746;264747;264748;264749;264750;264751;264752;264753;264754 264747 24 YAGQDIVSNASCTTNCLAPLAK Unmodified 2353.1042 0.10423044 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 2 2 3 2 2 2 3 3 38.965 37.182 2;3 8.9972E-23 18217 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 230.16 227.5 25881000000 1605700000 1574000000 1441000000 8262900 7546400 5281600 2860700000 2730000000 2663600000 4209600 5686000 5595500 1986100000 1832800000 1769200000 0 0 0 2571800000 2364400000 2445600000 0 0 0 23165 504 22443 431067;431068;431069;431070;431071;431072;431073;431074;431075;431076;431077;431078;431079;431080;431081;431082;431083;431084;431085;431086;431087;431088;431089;431090;431091;431092;431093;431094;431095;431096;431097;431098;431099;431100;431101;431102;431103 264755;264756;264757;264758;264759;264760;264761;264762;264763;264764;264765;264766;264767;264768;264769;264770;264771;264772;264773;264774;264775;264776;264777;264778;264779;264780;264781 264773 27 YAGQDKVNPGSIILSAEMMLR Unmodified 2292.1606 0.1606231 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 54.014 52.652 3 0.0033624 19201 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 53.059 49.031 22432000 7381600 0 0 4029200 3912700 5066900 0 0 0 0 0 0 0 0 0 0 0 0 0 2041100 0 0 0 0 23166 179 22444 431104;431105;431106;431107;431108 264782;264783 264783 2 YAGRPASASPAVGYMSVHQK Unmodified 2076.0211 0.021093153 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 17.021 17.53 3;4 4.1886E-10 5857 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 114.06 112.7 1440000000 134410000 118740000 97880000 6900400 0 0 59964000 73465000 71612000 9239400 6587300 3921200 75033000 82694000 93348000 2068300 0 0 174060000 207320000 172790000 15817000 16522000 17643000 23167 937 22445 431109;431110;431111;431112;431113;431114;431115;431116;431117;431118;431119;431120;431121;431122;431123;431124;431125;431126;431127;431128;431129;431130;431131;431132;431133;431134;431135;431136;431137;431138;431139;431140;431141;431142;431143;431144;431145;431146;431147 264784;264785;264786;264787;264788;264789;264790;264791;264792;264793;264794;264795;264796;264797;264798;264799;264800;264801;264802;264803;264804;264805;264806;264807;264808;264809 264809 26 YAGVGDIIK Unmodified 934.51238 0.51238239 820 P0ADY3 rplN 50S ribosomal protein L14 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.689 27.402 2 0.00099453 12058 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 95.909 36.704 4567400000 593500000 557360000 481730000 21726000 22563000 20289000 201480000 222240000 191330000 42765000 44687000 40554000 252870000 214210000 225480000 48116000 32553000 38769000 392090000 385750000 370360000 57830000 53388000 55731000 23168 820 22446 431148;431149;431150;431151;431152;431153;431154;431155;431156;431157;431158;431159;431160;431161;431162;431163;431164;431165;431166;431167;431168;431169;431170;431171 264810;264811;264812;264813;264814;264815;264816;264817;264818;264819;264820;264821;264822;264823;264824;264825;264826;264827;264828;264829 264828 20 YAHAGGYNPPIVVIHGNQVK Unmodified 2133.112 0.11195707 268 P0A6P5 der GTPase Der yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.323 22.601 4 3.2712E-05 9685 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 82.707 82.328 140050000 24434000 25680000 20470000 0 1594100 1032900 6702600 7794900 6705000 0 0 0 6584200 6766200 6920500 0 0 0 7836500 7623600 9905000 0 0 0 23169 268 22447 431172;431173;431174;431175;431176;431177;431178;431179;431180;431181;431182;431183;431184;431185 264830;264831;264832;264833;264834 264830 5 YAHEKPK Unmodified 871.4552 0.45520186 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 4.7802 5.6024 2 0.0048395 1221 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.63 79.575 32302000 6473400 5405100 4160800 0 0 0 1518200 1323200 1347200 0 0 0 0 2362600 0 0 0 0 3903200 3147200 2660800 0 0 0 23170 1353 22448 431186;431187;431188;431189;431190;431191;431192;431193;431194;431195 264835;264836;264837;264838;264839 264837 4 YAHIGTGNFNEK Unmodified 1349.6364 0.6364137 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 14.819 15.557 2 0.00061039 5204 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 103.31 93.025 25387000 0 5252900 5362100 0 0 0 3277000 4437700 3021900 0 0 0 1384900 0 0 0 0 0 0 2650800 0 0 0 0 23171 326 22449 431196;431197;431198;431199;431200;431201;431202 264840 264840 1 YAIALNLER Unmodified 1061.5869 0.58694431 645 P0ABB0 atpA ATP synthase subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.874 33.372 2 6.493E-05 15342 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 160.75 134.05 5889300000 193280000 179870000 141700000 44274000 43974000 43817000 509350000 468630000 453360000 111010000 92239000 87899000 447440000 455550000 413900000 59369000 42478000 47401000 567740000 558460000 536140000 129860000 138150000 123380000 23172 645 22450 431203;431204;431205;431206;431207;431208;431209;431210;431211;431212;431213;431214;431215;431216;431217;431218;431219;431220;431221;431222;431223;431224;431225;431226 264841;264842;264843;264844;264845;264846;264847;264848;264849;264850;264851;264852;264853;264854;264855;264856;264857;264858;264859;264860;264861;264862;264863;264864;264865;264866;264867;264868;264869;264870 264867 29 YAIDAEK Unmodified 808.39668 0.39668393 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 13.519 14.305 2 0.16525 4215 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 54.205 41.774 466310000 0 0 0 1110400 1616000 1598700 0 115600000 0 2180100 820730 0 107760000 97311000 0 0 0 0 0 0 138300000 0 0 0 23173 1496 22451 431227;431228;431229;431230;431231;431232;431233;431234;431235 264871 264871 0 YAIDASK Unmodified 766.38612 0.38611924 1308 P27830 rffG dTDP-glucose 4,6-dehydratase 2 yes yes 0 0 0 By matching By matching By MS/MS 1 1 1 12.366 13.151 2 0.074253 4098 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 58.604 33.047 22934000 3999500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1517000 0 17417000 0 0 0 23174 1308 22452 431236;431237;431238 264872 264872 1 YAIVANDVR Unmodified 1019.54 0.53999412 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 1 1 1 2 2 1 1 2 2 1 1 1 1 2 1 1 1 1 21.155 21.237 2 0.00013676 8255 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 132.08 121.67 2701600000 651560000 660790000 525410000 11814000 12140000 16818000 154700000 140530000 169590000 39065000 30293000 25824000 16242000 24553000 20701000 9234800 7612400 6494500 31876000 37895000 30345000 27712000 25675000 24742000 23175 677 22453 431239;431240;431241;431242;431243;431244;431245;431246;431247;431248;431249;431250;431251;431252;431253;431254;431255;431256;431257;431258;431259;431260;431261;431262;431263;431264;431265;431266;431267;431268 264873;264874;264875;264876;264877;264878;264879;264880;264881;264882 264882 8 YAIVANDVRK Unmodified 1147.635 0.63495714 677 P0ABT2 dps DNA protection during starvation protein yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 1 1 2 2 2 1 1 1 2 2 2 14.709 15.286 2;3 0.00029223 3615 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 72.243 64.598 127870000 20258000 8947500 6352700 13613000 14804000 15120000 4122700 3288800 3306200 12520000 13623000 11916000 0 0 0 0 0 0 0 0 0 0 0 0 23176 677 22454 431269;431270;431271;431272;431273;431274;431275;431276;431277;431278;431279;431280;431281;431282;431283;431284;431285;431286;431287 264883;264884;264885;264886;264887;264888;264889;264890 264890 8 YALCELYER Unmodified 1215.5594 0.55940893 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 33.414 31.958 2 4.6431E-05 14540 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 166.96 155.11 1480700000 117390000 109720000 121490000 0 296810 0 138920000 131310000 116760000 0 0 0 113630000 116520000 120880000 0 0 0 117740000 127850000 148230000 0 0 0 23177 1956 22455 431288;431289;431290;431291;431292;431293;431294;431295;431296;431297;431298;431299;431300 264891;264892;264893;264894;264895;264896;264897;264898;264899;264900;264901 264900 11 YALNAANAR Unmodified 962.49338 0.49337828 1465 P37330 glcB Malate synthase G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.605 15.371 2 4.8466E-06 5063 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 173.85 165.26 717580000 111150000 107780000 108600000 0 0 0 52384000 55381000 46176000 0 0 0 27751000 25713000 22283000 0 0 0 48148000 57109000 55111000 0 0 0 23178 1465 22456 431301;431302;431303;431304;431305;431306;431307;431308;431309;431310;431311;431312 264902;264903;264904;264905;264906;264907;264908;264909 264908 8 YALPNVIK Unmodified 916.5382 0.53820321 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.132 30.071 2 0.00091658 10340 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 117.7 102.48 253080000 31216000 30470000 22194000 1625100 0 2017900 0 0 10606000 0 0 0 9228100 8729500 7771900 45608000 29182000 33379000 9424600 8902000 0 0 0 2728600 23179 515 22457 431313;431314;431315;431316;431317;431318;431319;431320;431321;431322;431323;431324;431325;431326;431327 264910;264911;264912;264913;264914;264915;264916;264917;264918;264919;264920;264921;264922;264923;264924 264910 15 YALVGDVGGTNAR Unmodified 1291.6521 0.65206377 285 P0A6V8 glk Glucokinase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.958 24.789 2 1.0467E-23 10532 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 228.2 218.42 1237200000 65197000 59993000 52896000 425460 0 0 145750000 147180000 139200000 970400 0 0 114000000 104870000 99163000 0 0 0 102130000 103130000 102310000 0 0 0 23180 285 22458 431328;431329;431330;431331;431332;431333;431334;431335;431336;431337;431338;431339;431340;431341 264925;264926;264927;264928;264929;264930;264931;264932;264933;264934;264935 264935 11 YALVVGSDVLAR Unmodified 1261.703 0.7030367 273 P0A6R0 fabH 3-oxoacyl-[acyl-carrier-protein] synthase 3 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.852 37.988 2 3.1938E-06 17677 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 166.07 151.43 1609200000 100640000 88957000 84090000 1384500 1389700 1644600 125290000 121240000 118360000 1678000 1751800 1308400 151030000 143720000 147570000 0 0 0 177050000 170620000 168330000 858980 1221600 1123200 23181 273 22459 431342;431343;431344;431345;431346;431347;431348;431349;431350;431351;431352;431353;431354;431355;431356;431357;431358;431359;431360;431361;431362 264936;264937;264938;264939;264940;264941;264942;264943;264944;264945;264946;264947 264946 10 YAMIGDPTGALTR Oxidation (M) 1380.6708 0.6707503 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 30.883 29.34 2 1.7511E-05 14180 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 113.44 107.95 556220000 134750000 123420000 0 0 0 0 111060000 98065000 88918000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23182 827 22460 431363;431364;431365;431366;431367 264948;264949;264950;264951;264952;264953;264954;264955 264952 391 8 YAMIGDPTGALTR Unmodified 1364.6758 0.67583567 827 P0AE08 ahpC Alkyl hydroperoxide reductase subunit C yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1 2 2 3 3 3 3 3 2 3 36.691 35.058 1;2;3 1.6974E-06 17280 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.25 111.8 24154000000 3487000000 3071300000 74353000 20508000 21585000 18398000 65642000 66011000 3459400000 0 0 0 2187600000 1955000000 1881200000 0 0 0 2654400000 2627600000 2563800000 0 0 0 23183 827 22460 431368;431369;431370;431371;431372;431373;431374;431375;431376;431377;431378;431379;431380;431381;431382;431383;431384;431385;431386;431387;431388;431389;431390;431391;431392;431393;431394;431395;431396;431397;431398;431399;431400;431401 264956;264957;264958;264959;264960;264961;264962;264963;264964;264965;264966;264967;264968;264969 264956 13 YAMNFSADAFMR Unmodified 1422.606 0.60604155 303 P0A725 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.123 43.396 2 0.041046 21136 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 51.927 50.544 26340000 0 2487200 2436700 0 785940 798820 2851500 2513600 2113200 1012000 936530 1076500 2471200 1830700 1867400 0 0 0 3158500 0 0 0 0 0 23184 303 22461 431402;431403;431404;431405;431406;431407;431408;431409;431410;431411;431412;431413;431414;431415 264970;264971 264970 0 YANNDMQELEAR Unmodified 1452.6303 0.63034205 635 P0AB77 kbl 2-amino-3-ketobutyrate coenzyme A ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.436 21.882 2 3.982E-23 9507 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 228.2 209.23 2178800000 246560000 208070000 196320000 0 0 0 207060000 152450000 157330000 0 0 0 153600000 168910000 143200000 0 0 0 177360000 170570000 197400000 0 0 0 23185 635 22462 431416;431417;431418;431419;431420;431421;431422;431423;431424;431425;431426;431427 264972;264973;264974;264975;264976;264977;264978;264979 264973 8 YANPIPSR Unmodified 916.47667 0.47666558 1181 P21499 rnr Ribonuclease R yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 17.464 17.86 2 0.0050114 6378 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 87.323 80.936 57456000 16580000 17357000 17693000 467210 0 0 0 0 0 961540 832850 600100 0 0 0 0 0 0 0 2964300 0 0 0 0 23186 1181 22463 431428;431429;431430;431431;431432;431433;431434;431435 264980;264981 264981 2 YANQSNITIIHNPDYAQGLLTSVK Unmodified 2659.3606 0.36057978 1954 Q46810 mocA Molybdenum cofactor cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 41.405 39.672 3 0.0036767 19830 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 50.498 48.61 119320000 8780900 8626800 6114800 0 0 0 16618000 15902000 14951000 0 3243300 0 6310100 7572000 6483000 0 0 0 8835300 9241400 6644700 0 0 0 23187 1954 22464 431436;431437;431438;431439;431440;431441;431442;431443;431444;431445;431446;431447;431448 264982 264982 1 YAPFEIPSEIYAQWDAK Unmodified 2026.9676 0.96764382 1299 P27302 tktA Transketolase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 54.454 53.012 2;3 2.8632E-10 24950 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 174.89 174.89 5148600000 322390000 344870000 338760000 0 0 842670 421540000 374020000 311330000 0 0 0 518490000 518270000 436550000 0 0 0 496870000 529580000 535050000 0 0 0 23188 1299 22465 431449;431450;431451;431452;431453;431454;431455;431456;431457;431458;431459;431460;431461;431462;431463;431464;431465;431466;431467;431468;431469;431470;431471;431472;431473 264983;264984;264985;264986;264987;264988;264989;264990;264991;264992;264993;264994;264995;264996;264997;264998;264999;265000;265001;265002;265003;265004;265005;265006 265005 24 YAPGDLVGVGCIVDSCK Unmodified 1808.8437 0.84370564 1762 P75691 yahK Aldehyde reductase YahK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 2 2 2 43.331 41.991 2;3 9.5895E-14 20302 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 160.38 158.06 1754700000 626210000 581390000 547060000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23189 1762 22466 431474;431475;431476;431477;431478;431479 265007;265008;265009;265010;265011;265012 265011 6 YAQLLSEAQQR Unmodified 1305.6677 0.66771383 390 P0A823 sfsA Sugar fermentation stimulation protein A yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 23.876 22.915 2 0.00016258 10028 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 109.29 102.39 56736000 0 0 0 0 0 0 5277600 4899700 6343100 0 0 0 4652700 5011600 6883500 0 0 0 7130000 8253300 8284000 0 0 0 23190 390 22467 431480;431481;431482;431483;431484;431485;431486;431487;431488 265013 265013 1 YAQQGGR Unmodified 778.3722 0.37220051 1412 P33221 purT Phosphoribosylglycinamide formyltransferase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 9.7095 10.257 2 0.14127 1878 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 46.351 6.248 121570000 0 0 0 0 0 0 1587200 1658600 1367100 0 77009000 0 0 0 0 0 0 0 0 0 0 0 39949000 0 23191 1412 22468 431489;431490;431491;431492;431493 265014;265015 265014 2 YAQSLTDKPVK Unmodified 1248.6714 0.67140222 1265 P25665 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 12.442 13.222 2;3 1.0801E-13 3770 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.88 151.43 2256700000 153120000 159840000 157680000 0 0 0 594690000 315190000 647120000 0 3276700 0 30353000 25673000 18698000 0 0 0 46182000 54636000 50250000 0 0 0 23192 1265 22469 431494;431495;431496;431497;431498;431499;431500;431501;431502;431503;431504;431505;431506;431507;431508;431509;431510;431511;431512;431513;431514;431515;431516;431517;431518 265016;265017;265018;265019;265020;265021 265016 6 YAQVDVIK Unmodified 934.51238 0.51238239 107 P05055 pnp Polyribonucleotide nucleotidyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.572 20.744 2 0.0010158 8199 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 113.5 52.7 3620900000 167410000 185810000 145740000 21813000 22614000 23041000 326170000 302440000 293800000 13191000 11424000 10358000 322740000 303390000 261320000 3535300 2693300 3436500 358710000 410290000 402140000 10375000 7848500 10614000 23193 107 22470 431519;431520;431521;431522;431523;431524;431525;431526;431527;431528;431529;431530;431531;431532;431533;431534;431535;431536;431537;431538;431539;431540;431541;431542 265022;265023;265024;265025;265026;265027;265028;265029;265030;265031;265032;265033;265034;265035;265036;265037;265038;265039;265040;265041 265031 16 YASSILALNATTGK Unmodified 1408.7562 0.75619449 1115 P15877 gcd Quinoprotein glucose dehydrogenase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.779 32.28 2 9.5941E-05 12590 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 87.001 81.66 89419000 9709600 8971700 6475700 2730100 0 0 6586500 6225800 7458300 4014500 3700000 0 3117700 2932000 3950100 0 835390 0 7425900 7716500 7568700 0 0 0 23194 1115 22471 431543;431544;431545;431546;431547;431548;431549;431550;431551;431552;431553;431554;431555;431556;431557;431558;431559;431560 265042;265043;265044;265045;265046;265047;265048 265042 5 YATLSGTNTPR Unmodified 1179.5884 0.58840088 1233 P24171 dcp Peptidyl-dipeptidase dcp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 15.28 16.164 2 1.3672E-14 5550 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 177.3 166.59 526110000 0 120510000 119930000 0 0 0 0 0 0 0 0 0 47983000 37651000 39137000 0 0 0 54683000 54370000 51837000 0 0 0 23195 1233 22472 431561;431562;431563;431564;431565;431566;431567;431568;431569;431570 265049;265050;265051;265052;265053;265054;265055;265056;265057;265058 265053 10 YAVGQGPMWVVVNAH Unmodified 1626.7977 0.79768214 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 46.448 45.208 2 5.707E-07 22155 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 126.07 124.59 863260000 311340000 293980000 257950000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23196 1610 22473 431571;431572;431573 265059;265060 265059 2 YAVLCGGGANHR Unmodified 1273.5986 0.59858841 1334 P30011 nadC Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 2 2 2 1 1 2 2 1 2 2 2 12.911 13.684 2;3 8.0179E-07 4134 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 152.63 121.56 291960000 34766000 29443000 29130000 0 0 0 28162000 27867000 29495000 911570 1701200 0 20457000 15814000 7921300 0 0 0 22309000 20827000 23156000 0 0 0 23197 1334 22474 431574;431575;431576;431577;431578;431579;431580;431581;431582;431583;431584;431585;431586;431587;431588;431589;431590;431591;431592;431593;431594;431595;431596;431597;431598 265061;265062;265063;265064;265065;265066;265067;265068;265069 265061 9 YAVLFDLLLK Unmodified 1193.706 0.70599682 907 P0AF26 narJ Nitrate reductase molybdenum cofactor assembly chaperone NarJ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.259 53.798 2 0.00071946 26489 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 88.948 88.948 302070000 19376000 14533000 18158000 4250700 2634300 0 16135000 12722000 16426000 8208100 7671600 9247700 15436000 13112000 11298000 0 0 0 35003000 38817000 36584000 7968400 7234500 7254400 23198 907 22475 431599;431600;431601;431602;431603;431604;431605;431606;431607;431608;431609;431610;431611;431612;431613;431614;431615;431616;431617;431618 265070;265071;265072;265073;265074;265075;265076;265077;265078;265079 265075 10 YAVTDAESAR Unmodified 1081.504 0.50400254 506 P0A9C0 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.896 15.494 2 7.9382E-09 5263 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 187 168.22 609910000 4848700 5908800 3967300 0 0 0 92865000 123370000 110070000 6035500 4915600 4985200 59557000 50156000 40814000 0 0 0 33182000 32927000 34934000 0 1379800 0 23199 506 22476 431619;431620;431621;431622;431623;431624;431625;431626;431627;431628;431629;431630;431631;431632;431633;431634 265080;265081;265082;265083;265084;265085;265086;265087;265088 265080 9 YAWPGNVR Unmodified 961.477 0.47699993 162 P07604 tyrR Transcriptional regulatory protein TyrR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 25.601 24.503 2 0.00081135 10964 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 122.15 118.3 125140000 19186000 18232000 15434000 0 0 0 9066300 9209800 8901300 0 0 244940 7272000 4764000 5453200 0 0 0 10375000 8392100 8609700 0 0 0 23200 162 22477 431635;431636;431637;431638;431639;431640;431641;431642;431643;431644;431645;431646;431647 265089;265090;265091;265092;265093 265090 5 YAWYCQQMMQAR Unmodified 1634.6792 0.67922327 1287 P26649 glgS Glycogen synthesis protein GlgS yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 36.131 34.523 2 1.8004E-05 16901 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.08 121.46 57884000 2966700 0 0 0 0 0 12835000 12485000 9349400 0 0 0 6776200 5574600 4952200 0 0 0 0 0 2946000 0 0 0 23201 1287 22478 431648;431649;431650;431651;431652;431653;431654;431655 265094;265095 265094 1 YCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAK Unmodified 4137.9704 0.9703693 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 55.798 54.341 4 9.9062E-11 25785 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 97.243 96.91 519410000 0 69581000 71812000 0 0 0 19432000 0 19904000 0 0 0 47243000 49750000 46222000 0 0 0 67949000 69265000 58255000 0 0 0 23202 1485 22479 431656;431657;431658;431659;431660;431661;431662;431663;431664;431665 265096 265096 1 YCDSVVCHINGYQGIQAALEK Unmodified 2424.1202 0.12021485 928 P0AFD1 nuoE NADH-quinone oxidoreductase subunit E yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.477 36.861 3 2.4486E-15 17898 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 144.01 141.17 480050000 19645000 16851000 14570000 12076000 8935600 6788800 23772000 21029000 20427000 22241000 18940000 20619000 27480000 23787000 23747000 7498900 3661800 6390100 52497000 38920000 39846000 16909000 14309000 19104000 23203 928 22480 431666;431667;431668;431669;431670;431671;431672;431673;431674;431675;431676;431677;431678;431679;431680;431681;431682;431683;431684;431685;431686;431687;431688;431689 265097;265098;265099;265100;265101;265102;265103;265104;265105;265106;265107;265108;265109;265110;265111 265107 15 YCGQLQMIQEQISNLEAQITDVR Unmodified 2736.3211 0.3210995 16 CON__P35527 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 2 1 2 2 55.584 54.144 2;3 3.7347E-53 21882 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 312.02 301.23 476550000 0 0 0 3405800 0 2461600 0 0 0 129480000 147050000 121360000 0 0 0 0 0 0 0 0 0 14546000 26038000 32206000 + 23204 16 22481 431690;431691;431692;431693;431694;431695;431696;431697;431698;431699;431700;431701;431702 265112;265113;265114;265115;265116;265117;265118;265119;265120 265117 9 YCGSPIPLSFDECGK Unmodified 1728.7487 0.74874262 991 P0AG76 sbcD Nuclease SbcCD subunit D yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 41.488 39.853 2 0.00074053 19324 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.023 65.333 48598000 4374500 4962300 3342000 0 0 0 0 3485300 2096300 0 0 0 5125100 4144000 3321500 0 0 0 6406200 6787200 4553300 0 0 0 23205 991 22482 431703;431704;431705;431706;431707;431708;431709;431710;431711;431712;431713 265121;265122;265123;265124;265125 265123 0 YCHMACPYGAPQYNETK Unmodified 2088.8492 0.84920172 1153 P18776 dmsB Anaerobic dimethyl sulfoxide reductase chain B yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 19.901 19.955 3 0.044822 6237 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 37.583 37.572 27196000 0 0 0 0 0 0 0 4396300 6050100 2655200 2202800 2336600 0 0 0 0 0 0 2321600 2957900 0 1506900 1169200 1599300 23206 1153 22483 431714;431715;431716;431717;431718;431719;431720;431721;431722;431723 265126;265127;265128 265127 3 YCLAHGAMAIPVY Unmodified 1464.6894 0.68937725 810 P0ADU7 yqiB Uncharacterized protein YqiB yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 40.171 40.293 2 5.6766E-05 14942 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 91.041 86.512 63654000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24382000 19610000 19661000 0 0 0 0 0 0 23207 810 22484 431724;431725;431726 265129 265129 1 YCLDDIFK Unmodified 1072.4899 0.48993238 326 P0A7B1 ppk Polyphosphate kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.24 42.873 2 0.01678 20859 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 67.981 57.115 66223000 8962100 12396000 8785300 0 0 0 0 6691600 5563400 0 1596800 1086900 4648300 2264000 2074200 1399900 0 1851100 2878000 3200700 2825000 0 0 0 23208 326 22485 431727;431728;431729;431730;431731;431732;431733;431734;431735;431736;431737;431738;431739;431740;431741 265130;265131 265130 2 YCLGVTNPDSGIAEK Unmodified 1622.761 0.76102187 1701 P64636 yrfG GMP/IMP nucleotidase YrfG yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 29.381 28.107 2 0.00034926 12463 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 96.64 90.257 167070000 6945400 4176200 0 0 0 0 16735000 13486000 10875000 0 0 0 13977000 18623000 13830000 0 0 0 23473000 24900000 20048000 0 0 0 23209 1701 22486 431742;431743;431744;431745;431746;431747;431748;431749;431750;431751;431752 265132;265133 265133 0 YCMAQNYLPAIK Unmodified 1470.6999 0.69994194 90 P04425 gshB Glutathione synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.078 36.404 2 1.7233E-07 17959 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.75 151.86 883550000 80632000 73317000 66078000 0 0 0 80756000 78962000 82848000 0 0 0 78606000 61809000 61808000 0 0 0 83058000 68183000 67491000 0 0 0 23210 90 22487 431753;431754;431755;431756;431757;431758;431759;431760;431761;431762;431763;431764 265134;265135;265136;265137;265138;265139;265140;265141;265142;265143;265144;265145 265135 11 YCMVACPYNVPK Unmodified 1500.6564 0.65636256 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.502 28.805 2 2.5745E-05 13670 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 118.32 117.97 163210000 0 0 0 0 0 0 18230000 15999000 16287000 9205700 8786600 7343900 15911000 18171000 14916000 0 0 0 10698000 9434000 10947000 2380500 3095700 1806800 23211 600 22488 431765;431766;431767;431768;431769;431770;431771;431772;431773;431774;431775;431776;431777;431778;431779 265146;265147;265148;265149;265150;265151;265152;265153 265151 8 YCPSIEDK Unmodified 1010.4379 0.43789681 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 14.461 15.237 2 0.045716 5018 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.682 22.549 190810000 16339000 11992000 16171000 374290 0 0 18037000 18184000 15399000 0 0 0 12758000 11037000 13517000 0 0 0 20824000 15331000 20847000 0 0 0 23212 280 22489 431780;431781;431782;431783;431784;431785;431786;431787;431788;431789;431790;431791;431792 265154;265155;265156 265155 3 YCSLAATSLGLGAGMAPK Unmodified 1766.8695 0.86952646 1738 P69739 hyaA Hydrogenase-1 small chain yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.497 39.569 2 2.4617E-06 16219 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 125.54 112.53 35679000 4971900 0 0 0 0 0 1658800 2181100 0 4193900 4381100 4375200 2282500 2211700 1952300 0 0 0 3659800 3810400 0 0 0 0 23213 1738 22490 431793;431794;431795;431796;431797;431798;431799;431800;431801;431802;431803 265157 265157 1 YCTPNVFDAK Unmodified 1213.5438 0.54375887 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.588 27.147 2 0.00040695 12737 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.1 102.25 309450000 50522000 40906000 34268000 5979700 5239300 3945600 16134000 24025000 15827000 6731300 4749800 5233500 9980900 10812000 12217000 0 0 0 20575000 19966000 21755000 0 0 580020 23214 1211 22491 431804;431805;431806;431807;431808;431809;431810;431811;431812;431813;431814;431815;431816;431817;431818;431819;431820;431821;431822 265158;265159;265160;265161;265162;265163;265164;265165 265160 7 YCTYCVVPYTR Unmodified 1480.6479 0.64790636 862 P0AEI1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 31.581 29.664 2 0.00030826 11670 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 90.629 90.629 36488000 0 0 0 3451800 3644900 2553500 0 0 0 6003900 4894200 4728700 0 0 0 0 0 0 0 0 0 4219100 3903900 3087600 23215 862 22492 431823;431824;431825;431826;431827;431828;431829;431830;431831 265166 265166 1 YCVNSASLR Unmodified 1068.5022 0.50222841 310 P0A746 msrB Peptide methionine sulfoxide reductase MsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.48 18.057 2 1.3547E-05 6228 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 161.9 152.43 1093800000 123680000 128320000 115160000 6196700 5051600 4739300 75583000 68566000 60195000 0 0 0 68447000 73037000 65204000 0 1029400 0 104170000 92843000 89222000 4402500 3846600 4096200 23216 310 22493 431832;431833;431834;431835;431836;431837;431838;431839;431840;431841;431842;431843;431844;431845;431846;431847;431848;431849;431850 265167;265168;265169;265170;265171;265172;265173;265174;265175;265176;265177;265178;265179 265178 12 YCVQLSQIQAQISALEEQLQQIR Unmodified 2745.412 0.41196342 13 CON__P13645 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 55.677 54.283 3 2.4896E-54 19938 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 208.47 205.54 123220000 0 0 0 17217000 13622000 12356000 0 0 0 7838000 8262700 10409000 0 0 0 0 0 0 0 0 0 17851000 18729000 16933000 + 23217 13 22494 431851;431852;431853;431854;431855;431856;431857;431858;431859 265180;265181;265182;265183 265183 4 YDAEQIVR Unmodified 992.49271 0.49270958 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.739 20.948 2 0.0009293 7825 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 117.16 95.613 145600000 0 2733900 4783400 0 0 0 7609100 6890700 6746600 0 0 0 12810000 12933000 10481000 6323800 4445100 4156500 20642000 19991000 16747000 2919000 2740300 2648000 23218 1070 22495 431860;431861;431862;431863;431864;431865;431866;431867;431868;431869;431870;431871;431872;431873;431874;431875;431876 265184 265184 1 YDANNIYLAANYGETR Unmodified 1846.8486 0.84859132 74 P02931 ompF Outer membrane protein F yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 36.958 34.918 2 2.0197E-08 13459 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 125.03 117.99 32491000 0 0 3464900 2435100 2041300 2405600 0 0 0 4065100 3123300 3522900 0 0 0 0 0 0 0 0 0 3386300 3650200 4396200 23219 74 22496 431877;431878;431879;431880;431881;431882;431883;431884;431885;431886 265185;265186;265187;265188;265189;265190 265190 6 YDANNIYLAAQYTQTYNATR Unmodified 2353.0975 0.097488798 144 P06996 ompC Outer membrane protein C yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 1 1 42.957 40.872 2;3 2.9017E-18 16302 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 165.17 165.17 134250000 0 0 0 9917000 10578000 9121100 0 0 0 25942000 29891000 27290000 0 0 0 0 0 0 2219200 0 2711500 9436500 2830900 4307500 23220 144 22497 431887;431888;431889;431890;431891;431892;431893;431894;431895;431896;431897;431898;431899;431900;431901;431902;431903;431904 265191;265192;265193;265194;265195;265196;265197;265198 265193 8 YDANNIYLATFYSETR Unmodified 1939.8952 0.89520716 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS 1 2 2 2 2 1 1 1 2 2 2 49.125 48.094 2;3 4.3451E-08 17581 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 136.99 132.81 123460000 0 0 0 0 0 0 0 0 0 13414000 17135000 19328000 0 0 0 6317600 4273200 2920000 13256000 0 8438500 12361000 12265000 13756000 23221 75 22498 431905;431906;431907;431908;431909;431910;431911;431912;431913;431914;431915;431916;431917;431918;431919;431920;431921;431922 265199;265200 265199 2 YDANNIYLATFYSETRK Unmodified 2067.9902 0.99017018 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 41.445 39.726 3 1.2904E-06 16216 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 96.096 91.386 62510000 0 0 0 0 0 0 0 0 0 10330000 8800600 8673400 0 0 0 5165500 3515400 0 0 0 0 8891900 9520300 7612200 23222 75 22499 431923;431924;431925;431926;431927;431928;431929;431930 265201;265202;265203;265204;265205;265206 265201 6 YDAVIALGTVIR Unmodified 1289.7343 0.73433683 1640 P61714 ribE 6,7-dimethyl-8-ribityllumazine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 3 3 3 1 1 1 2 2 3 2 2 3 1 47.352 45.891 2;3 4.6683E-05 22618 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 130.98 120.12 1481300000 112960000 116190000 102480000 737810 0 600600 159340000 145100000 132090000 2352200 1339000 1439200 119200000 94680000 98518000 0 0 0 130720000 143120000 119510000 0 929310 0 23223 1640 22500 431931;431932;431933;431934;431935;431936;431937;431938;431939;431940;431941;431942;431943;431944;431945;431946;431947;431948;431949;431950;431951;431952;431953;431954;431955;431956;431957;431958;431959;431960;431961;431962;431963;431964;431965;431966 265207;265208;265209;265210;265211;265212;265213;265214;265215;265216;265217;265218;265219;265220;265221;265222;265223;265224;265225;265226;265227;265228;265229;265230;265231;265232;265233;265234;265235;265236;265237;265238;265239;265240;265241;265242 265212 29 YDAVISGMDITPER Unmodified 1565.7396 0.73955814 1350 P30860 artJ ABC transporter arginine-binding protein 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 38.644 37.053 2 2.4553E-05 17980 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 110.66 109.07 48102000 8455900 7270900 9308300 0 0 0 0 5830000 0 0 0 0 0 2370000 2847600 0 0 0 4664600 4257900 3097300 0 0 0 23224 1350 22501 431967;431968;431969;431970;431971;431972;431973;431974;431975 265243 265243 0 YDAVLVAIGR Unmodified 1075.6026 0.60259438 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 3 4 4 2 2 1 1 1 2 1 2 1 1 1 2 3 1 3 4 3 38.283 36.55 2;3 4.5388E-05 17801 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 163.9 141.37 16132000000 847210000 871990000 795020000 903660000 855960000 923610000 972910000 940420000 940090000 142810000 96702000 88900000 579360000 520480000 650740000 60359000 44002000 42889000 1085700000 989550000 1018400000 923980000 903500000 934000000 23225 542 22502 431976;431977;431978;431979;431980;431981;431982;431983;431984;431985;431986;431987;431988;431989;431990;431991;431992;431993;431994;431995;431996;431997;431998;431999;432000;432001;432002;432003;432004;432005;432006;432007;432008;432009;432010;432011;432012;432013;432014;432015;432016;432017;432018;432019;432020;432021;432022;432023;432024 265244;265245;265246;265247;265248;265249;265250;265251;265252;265253;265254;265255;265256;265257;265258;265259;265260;265261;265262;265263;265264;265265;265266;265267;265268;265269;265270;265271;265272;265273;265274;265275;265276;265277;265278;265279;265280;265281;265282;265283;265284;265285;265286;265287;265288;265289;265290;265291;265292;265293;265294;265295;265296;265297;265298;265299;265300;265301;265302;265303;265304 265252 59 YDCIVVDEAHR Unmodified 1375.619 0.61904908 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 19.818 20.271 2;3 0.00091523 7515 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 84.17 77.866 197380000 0 0 0 0 0 0 20928000 21695000 19989000 0 0 0 19765000 21068000 21220000 0 0 0 24524000 23582000 24609000 0 0 0 23226 193 22503 432025;432026;432027;432028;432029;432030;432031;432032;432033;432034;432035;432036;432037;432038;432039;432040;432041;432042 265305;265306;265307 265306 3 YDDACDPK Unmodified 982.37021 0.37021118 774 P0AD96 livJ Leu/Ile/Val-binding protein yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 10.87 11.569 2 0.082388 2806 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 52.937 52.937 84301000 32480000 26601000 25221000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23227 774 22504 432043;432044;432045 265308;265309 265309 2 YDDNFMSVVR Unmodified 1244.5496 0.54957253 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.414 35.731 2 4.4752E-23 17305 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 249.93 244.97 2169100000 581090000 584530000 536320000 753480 576650 762340 71707000 64292000 63386000 0 0 0 35619000 35985000 31540000 0 0 0 50232000 55251000 57064000 0 0 0 23228 852 22505 432046;432047;432048;432049;432050;432051;432052;432053;432054;432055;432056;432057;432058;432059;432060 265310;265311;265312;265313;265314;265315;265316;265317;265318;265319;265320;265321 265316 12 YDDNFMSVVR Oxidation (M) 1260.5445 0.54448715 852 P0AEE5 mglB D-galactose-binding periplasmic protein yes yes 0 1 0 By matching By MS/MS By MS/MS 1 1 1 27.286 26.381 2 0.04283 11879 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 56.013 56.013 23765000 5863800 9248000 8653300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23229 852 22505 432061;432062;432063 265322;265323 265323 2 YDDNIGVIILTGAGDK Unmodified 1662.8465 0.84646606 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 49.864 48.44 2;3 3.0838E-11 17399 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 192.65 185.99 2124800000 136300000 108190000 14311000 49168000 50151000 48910000 187630000 199490000 189170000 6943000 3512700 0 167350000 28312000 143830000 0 0 0 204240000 180230000 165930000 77188000 82930000 81051000 23230 679 22506 432064;432065;432066;432067;432068;432069;432070;432071;432072;432073;432074;432075;432076;432077;432078;432079;432080;432081;432082;432083;432084;432085;432086;432087;432088;432089;432090;432091;432092;432093;432094;432095;432096;432097;432098;432099;432100 265324;265325;265326;265327;265328;265329;265330;265331;265332;265333;265334;265335;265336;265337;265338;265339;265340;265341;265342;265343;265344;265345;265346;265347;265348;265349;265350;265351;265352;265353;265354;265355;265356;265357 265343 34 YDDNIGVIILTGAGDKAFCSGGDQK Unmodified 2613.2381 0.23808138 679 P0ABU0 menB 1,4-dihydroxy-2-naphthoyl-CoA synthase yes yes 0 0 1 By MS/MS By MS/MS By matching 1 1 1 48.609 47.257 3 0.0013891 16977 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 60.104 59.743 16330000 0 0 0 5226300 5164100 5939600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23231 679 22507 432101;432102;432103 265358;265359 265358 2 YDDVFAEVNR Unmodified 1226.5568 0.5567664 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 32.555 31.223 2 1.9763E-06 14718 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 159.11 153.75 357410000 27512000 25740000 30625000 0 0 0 26248000 27714000 28133000 0 0 0 20215000 21726000 21339000 0 0 0 41193000 43921000 43046000 0 0 0 23232 691 22508 432104;432105;432106;432107;432108;432109;432110;432111;432112;432113;432114;432115;432116 265360;265361;265362;265363;265364;265365;265366;265367 265365 8 YDEAPSNVAQAVIEAR Unmodified 1731.8428 0.84277766 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 38.589 36.73 2;3 7.7066E-31 18056 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 172.9 171.33 25830000000 2239100000 2243000000 1846500000 14143000 13964000 12603000 1921200000 1863100000 1700500000 15720000 14182000 15606000 1913300000 1865500000 1660400000 0 0 0 2925100000 2744800000 2779900000 13179000 13180000 15071000 23233 264 22509 432117;432118;432119;432120;432121;432122;432123;432124;432125;432126;432127;432128;432129;432130;432131;432132;432133;432134;432135;432136;432137;432138;432139;432140;432141;432142;432143;432144;432145;432146;432147;432148;432149;432150;432151;432152;432153;432154;432155;432156;432157;432158 265368;265369;265370;265371;265372;265373;265374;265375;265376;265377;265378;265379;265380;265381;265382;265383;265384;265385;265386;265387;265388;265389;265390;265391;265392;265393;265394;265395;265396;265397;265398;265399;265400;265401;265402;265403;265404;265405;265406;265407;265408;265409;265410;265411;265412;265413;265414;265415;265416 265379 48 YDEPTLIQHAER Unmodified 1470.7103 0.71030693 1070 P11454 entF Enterobactin synthase component F yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 21.757 21.821 2 1.7974E-06 8900 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 146.11 112.24 14256000 0 0 0 0 0 0 0 0 0 0 0 0 0 3861700 0 1878000 1157600 861940 0 6496800 0 0 0 0 23234 1070 22510 432159;432160;432161;432162;432163 265417;265418 265417 2 YDFHQEPAHILMK Unmodified 1627.7817 0.78169773 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 26.331 25.021 3;4 1.1666E-05 11228 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 106.58 103.8 515610000 216100000 76159000 82596000 1046000 0 0 14409000 10444000 9508900 3362600 2228900 3909700 14409000 13014000 12526000 0 0 0 18157000 18122000 18896000 714580 0 0 23235 1107 22511 432164;432165;432166;432167;432168;432169;432170;432171;432172;432173;432174;432175;432176;432177;432178;432179;432180;432181;432182 265419;265420;265421;265422;265423;265424;265425;265426;265427;265428;265429 265423 11 YDFIGSR Unmodified 856.40792 0.40791731 553 P0A9S3 gatD Galactitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.236 24.231 2 0.00043902 11127 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 154.11 117.53 865130000 170640000 156400000 119000000 2431300 1863100 0 64210000 70839000 60060000 0 0 4104100 34419000 29465000 26186000 0 0 1329400 38883000 41130000 41035000 0 3137400 0 23236 553 22512 432183;432184;432185;432186;432187;432188;432189;432190;432191;432192;432193;432194;432195;432196;432197;432198;432199;432200;432201 265430;265431;265432;265433;265434;265435;265436;265437;265438;265439;265440;265441;265442;265443;265444;265445 265431 16 YDFLAQMAGK Unmodified 1142.543 0.54303059 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 40.692 39.027 2 0.022727 18329 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 61.679 61.679 130010000 12080000 9798500 13760000 0 0 0 10395000 9744000 11611000 0 0 0 10631000 9659400 8775900 0 0 0 13276000 10057000 10220000 0 0 0 23237 1609 22513 432202;432203;432204;432205;432206;432207;432208;432209;432210;432211;432212;432213 265446;265447;265448;265449;265450;265451 265449 0 YDFSTPYTISGIQALVK Unmodified 1901.9775 0.97748023 874 P0AEM9 fliY Cystine-binding periplasmic protein yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 53.914 52.466 2 3.8743E-06 25613 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 113.77 110.74 972770000 122940000 111630000 116980000 0 0 0 98785000 88915000 78572000 0 0 0 78895000 0 69891000 0 0 0 67332000 70888000 67945000 0 0 0 23238 874 22514 432214;432215;432216;432217;432218;432219;432220;432221;432222;432223;432224 265452;265453;265454;265455;265456;265457;265458;265459;265460 265458 9 YDGECQMINANAER Unmodified 1669.6825 0.68245397 184 P08331 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.492 21.706 2 4.9214E-28 8646 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 248.21 248.21 223330000 33053000 33604000 30859000 0 0 0 15378000 13263000 11877000 0 0 0 17626000 13466000 14605000 0 0 0 13555000 11615000 14424000 0 0 0 23239 184 22515 432225;432226;432227;432228;432229;432230;432231;432232;432233;432234;432235;432236 265461;265462;265463;265464;265465;265466;265467;265468;265469;265470;265471;265472 265469 12 YDGLVEQLGGR Unmodified 1205.6041 0.60405094 1634 P60906 hisS Histidine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.423 30.067 2 3.006E-07 13610 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 158.76 135.68 1111800000 96896000 91416000 83066000 0 0 0 94390000 77062000 83087000 0 0 0 73301000 73764000 76929000 0 0 0 118390000 126550000 116960000 0 0 0 23240 1634 22516 432237;432238;432239;432240;432241;432242;432243;432244;432245;432246;432247;432248 265473;265474;265475;265476;265477;265478;265479;265480;265481;265482;265483 265482 11 YDIKDVGVDNAGAK Unmodified 1463.7256 0.72562264 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 21.347 21.657 2;3 6.9238E-06 8677 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 142.08 135.19 33858000 0 0 0 0 0 0 4344000 0 4965100 0 0 0 8148800 3598400 0 0 0 0 0 6828100 5973800 0 0 0 23241 895 22517 432249;432250;432251;432252;432253;432254;432255 265484;265485 265485 2 YDIPVVMDSAR Unmodified 1264.6122 0.61217279 397 P0A853 tnaA Tryptophanase yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.199 36.461 2 9.0155E-05 16917 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 121.73 121.73 2771500000 524030000 455780000 436400000 1802800 1810300 1909200 231950000 224550000 222160000 0 0 0 124690000 112370000 106820000 0 0 0 116260000 99354000 109110000 1155000 534220 799910 23242 397 22518 432256;432257;432258;432259;432260;432261;432262;432263;432264;432265;432266;432267;432268;432269;432270;432271;432272;432273 265486;265487;265488;265489;265490;265491;265492;265493;265494;265495;265496;265497 265497 12 YDLATLCQVNPELR Unmodified 1690.8349 0.83485551 1771 P75782 rlmF Ribosomal RNA large subunit methyltransferase F yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 43.036 41.697 2 0.0011451 20269 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 65.842 59.87 11310000 4398100 3859800 3052300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23243 1771 22519 432274;432275;432276 265498;265499 265498 0 YDLPGHSGDIWHGYLPDAR Unmodified 2168.0076 0.007551579 1104 P15067 glgX Glycogen debranching enzyme yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.986 37.32 4 0.0015653 18215 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 60.564 51.745 133610000 18374000 13382000 12350000 0 0 0 13472000 12717000 15411000 0 0 0 10150000 9774800 8925200 0 0 0 0 10147000 8912200 0 0 0 23244 1104 22520 432277;432278;432279;432280;432281;432282;432283;432284;432285;432286;432287 265500 265500 1 YDLRPSAWVTPK Unmodified 1431.751 0.75104953 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 2 2 2 2 2 1 2 2 2 2 2 2 1 2 33.017 31.38 2;3 4.7917E-05 15069 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 76.357 73.161 1063600000 125480000 114420000 108980000 721650 537170 701440 102800000 85721000 80882000 5578400 5749200 1090600 62679000 54293000 63019000 0 0 0 80802000 84182000 77244000 0 3659100 5069400 23245 1408 22521 432288;432289;432290;432291;432292;432293;432294;432295;432296;432297;432298;432299;432300;432301;432302;432303;432304;432305;432306;432307;432308;432309;432310;432311;432312;432313;432314;432315;432316;432317;432318;432319;432320;432321;432322 265501;265502;265503;265504;265505;265506;265507;265508;265509;265510;265511;265512;265513;265514;265515;265516;265517;265518;265519;265520;265521;265522;265523;265524;265525 265505 25 YDLSAVGR Unmodified 879.44503 0.4450311 463 P0A8V2 rpoB DNA-directed RNA polymerase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 2 3 2 1 2 1 1 1 1 23.551 22.864 2 8.1081E-05 8012 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 164.89 126.52 5993300000 234070000 222070000 198200000 1410900 1190200 1597500 139950000 138250000 135390000 346610000 158100000 129940000 181820000 159280000 154930000 892840000 658880000 661290000 190910000 204250000 202830000 305430000 312080000 361980000 23246 463 22522 432323;432324;432325;432326;432327;432328;432329;432330;432331;432332;432333;432334;432335;432336;432337;432338;432339;432340;432341;432342;432343;432344;432345;432346;432347;432348;432349;432350;432351;432352;432353;432354 265526;265527;265528;265529;265530;265531;265532;265533;265534;265535;265536;265537;265538;265539;265540;265541;265542;265543;265544;265545 265531 19 YDMDLVVCGHHQDFWSK Unmodified 2135.9193 0.9193302 847 P0AED0 uspA Universal stress protein A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 2 2 2 2 2 2 2 2 3 3 3 1 2 2 2 2 2 2 2 2 36.699 35.081 2;3;4 2.8467E-24 16816 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 240.59 238.96 3692500000 441470000 373180000 336560000 35483000 38459000 32621000 442490000 499140000 438990000 59838000 54829000 53491000 127550000 156600000 148550000 6326600 7132300 7206600 142430000 136620000 115200000 12002000 14385000 11925000 23247 847 22523 432355;432356;432357;432358;432359;432360;432361;432362;432363;432364;432365;432366;432367;432368;432369;432370;432371;432372;432373;432374;432375;432376;432377;432378;432379;432380;432381;432382;432383;432384;432385;432386;432387;432388;432389;432390;432391;432392;432393;432394;432395;432396;432397;432398;432399;432400;432401;432402;432403;432404;432405;432406;432407 265546;265547;265548;265549;265550;265551;265552;265553;265554;265555;265556;265557;265558;265559;265560;265561;265562;265563;265564;265565;265566;265567;265568;265569;265570;265571;265572;265573;265574;265575;265576;265577;265578;265579;265580;265581;265582;265583;265584;265585;265586;265587;265588 265581 43 YDMGLFNDPYSHLGPK Unmodified 1852.8454 0.8454202 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 41.989 40.284 2;3 3.4532E-08 20140 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 117.79 111.06 652790000 44471000 31481000 47496000 0 0 0 56307000 54714000 55183000 0 0 0 49098000 51018000 63000000 0 0 0 65984000 63531000 70512000 0 0 0 23248 1421 22524 432408;432409;432410;432411;432412;432413;432414;432415;432416;432417;432418;432419;432420;432421;432422;432423;432424;432425;432426;432427;432428;432429;432430 265589;265590;265591;265592;265593;265594;265595;265596;265597;265598;265599;265600;265601 265590 11 YDNHLLEDYTEEEFK Unmodified 1943.8425 0.84250289 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 39.964 38.184 2;3 7.7664E-36 18873 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 302.28 300.77 2132100000 170100000 157760000 152270000 0 0 0 156780000 150720000 155940000 1107800 1067600 1320500 181180000 144910000 153190000 0 0 0 236130000 234480000 234300000 0 0 824970 23249 29 22525 432431;432432;432433;432434;432435;432436;432437;432438;432439;432440;432441;432442;432443;432444;432445;432446;432447;432448;432449;432450;432451;432452;432453;432454;432455;432456;432457;432458 265602;265603;265604;265605;265606;265607;265608;265609;265610;265611;265612;265613;265614;265615;265616;265617 265605 16 YDQQSDAWIMR Unmodified 1411.619 0.61904908 1679 P64503 yebV Uncharacterized protein YebV yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 33.353 32.001 2 1.0782E-20 15603 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 200.05 196.48 263890000 55503000 49713000 48740000 0 0 0 0 0 62733000 0 0 0 0 5694400 4501500 0 0 0 11873000 14490000 10646000 0 0 0 23250 1679 22526 432459;432460;432461;432462;432463;432464;432465;432466;432467;432468;432469 265618;265619;265620;265621;265622;265623;265624;265625 265618 7 YDSGCGWPSFYEPVSEESIR Unmodified 2364.0005 0.0004768701 310 P0A746 msrB Peptide methionine sulfoxide reductase MsrB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.2 47.819 2 4.5682E-07 23598 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 134.9 134.9 492790000 71371000 62365000 60139000 1493100 1409700 1398100 26294000 24392000 23982000 0 0 0 32626000 28687000 32735000 0 0 0 38776000 40356000 42713000 2014000 2037800 0 23251 310 22527 432470;432471;432472;432473;432474;432475;432476;432477;432478;432479;432480;432481;432482;432483;432484;432485;432486 265626;265627;265628;265629;265630;265631;265632;265633;265634;265635;265636;265637 265627 12 YDSTHGR Unmodified 834.36203 0.36202975 504 P0A9B2 gapA Glyceraldehyde-3-phosphate dehydrogenase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 6.4464 7.0802 2 0.00043902 937 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.11 36.057 17220000000 1586200000 1528600000 1041500000 4302800 3386700 3862700 1205000000 1443500000 1368700000 6609700 6346000 5788300 1335000000 1171800000 1216400000 3866700 3052500 2670500 1894800000 1662000000 1718100000 2716000 3262200 2772900 23252 504 22528 432487;432488;432489;432490;432491;432492;432493;432494;432495;432496;432497;432498;432499;432500;432501;432502;432503;432504;432505;432506;432507;432508;432509;432510;432511;432512;432513 265638;265639;265640;265641;265642;265643;265644;265645;265646;265647;265648;265649;265650;265651;265652;265653;265654;265655;265656;265657;265658;265659;265660;265661 265651 24 YDSTTLTVGAGDFR Unmodified 1501.7049 0.7048872 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34.72 33.276 2 5.7588E-11 16202 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 168.3 153.64 677290000 42668000 40979000 39489000 0 0 0 51102000 61215000 51822000 3940300 5712500 6015900 58625000 50263000 49596000 8852400 4617600 4828800 59309000 62107000 58576000 6724800 5523700 5324900 23253 124 22529 432514;432515;432516;432517;432518;432519;432520;432521;432522;432523;432524;432525;432526;432527;432528;432529;432530;432531;432532;432533;432534;432535 265662;265663;265664;265665;265666;265667;265668;265669;265670;265671;265672;265673;265674;265675;265676;265677;265678 265668 8 YDTFDEAIR Unmodified 1128.5088 0.50875357 1835 P76217 astD N-succinylglutamate 5-semialdehyde dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 28.191 27.149 2 0.0001142 12375 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 155 147.09 245380000 87780000 72857000 82517000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2228600 0 0 0 23254 1835 22530 432536;432537;432538;432539 265679;265680;265681 265680 3 YDTIICNYPNGDMVGHTGVMEAAVK Unmodified 2754.2452 0.24515737 1487 P37689 gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.254 37.58 3 2.1968E-11 18552 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 133.76 133.76 847510000 46055000 42490000 43301000 0 0 0 79424000 86761000 78771000 0 0 0 85422000 79777000 79416000 0 0 0 78064000 72591000 75437000 0 0 0 23255 1487 22531 432540;432541;432542;432543;432544;432545;432546;432547;432548;432549;432550;432551 265682;265683;265684;265685;265686;265687;265688;265689;265690;265691;265692;265693 265683 12 YDTTRPSLR Unmodified 1107.5673 0.5672715 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 12.609 13.497 3 0.011524 3974 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 61.78 56.056 234210000 0 0 0 0 0 0 55449000 52677000 41664000 0 0 0 21924000 13688000 15041000 0 0 0 13399000 11415000 8957300 0 0 0 23256 500 22532 432552;432553;432554;432555;432556;432557;432558;432559;432560 265694;265695 265694 2 YDTYNTIITLGK Unmodified 1400.7187 0.71874635 1232 P23930 lnt Apolipoprotein N-acyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 40.163 38.426 2 0.0010397 18589 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 72.321 66.286 32542000 0 0 0 831600 0 0 4442800 4063300 2801200 0 0 0 3074100 2384100 1801400 0 0 0 5244400 4134900 3764000 0 0 0 23257 1232 22533 432561;432562;432563;432564;432565;432566;432567;432568;432569;432570 265696;265697 265697 0 YDTYSGR Unmodified 860.36645 0.36644643 1079 P12758 udp Uridine phosphorylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.606 12.383 2 0.00066144 3345 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 148.21 148.21 7870000000 169170000 130650000 116830000 2289600 2472000 2545900 1447500000 1420400000 1284200000 0 0 0 660750000 618660000 482060000 0 2258100 1756100 534090000 482500000 511910000 0 0 0 23258 1079 22534 432571;432572;432573;432574;432575;432576;432577;432578;432579;432580;432581;432582;432583;432584;432585;432586;432587;432588 265698;265699;265700;265701;265702;265703;265704;265705;265706;265707;265708;265709;265710 265702 13 YDVMNDLMSFGIHR Unmodified 1696.7701 0.77014677 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 2 50.062 48.714 2;3 4.0309E-15 24006 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 196.57 194.21 1455100000 93128000 94419000 83451000 18027000 19398000 17815000 115540000 108530000 111940000 37874000 26125000 27298000 89110000 79060000 81688000 0 8502900 4525800 138990000 125280000 129340000 15192000 13531000 16306000 23259 408 22535 432589;432590;432591;432592;432593;432594;432595;432596;432597;432598;432599;432600;432601;432602;432603;432604;432605;432606;432607;432608;432609;432610;432611;432612;432613;432614;432615;432616;432617;432618;432619;432620;432621;432622;432623;432624;432625;432626;432627;432628;432629;432630 265711;265712;265713;265714;265715;265716;265717;265718;265719;265720;265721;265722;265723;265724;265725;265726;265727;265728;265729;265730;265731;265732;265733;265734;265735;265736;265737;265738;265739;265740;265741 265719 29 YDWVVSLR Unmodified 1036.5342 0.53418046 86 P04079 guaA GMP synthase [glutamine-hydrolyzing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.037 40.199 2 1.5426E-06 20093 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 192.11 172.63 868090000 66826000 61575000 66093000 638400 0 621110 54152000 57791000 51676000 418920 673560 0 92520000 77790000 77621000 0 0 0 84974000 92966000 81012000 0 0 745350 23260 86 22536 432631;432632;432633;432634;432635;432636;432637;432638;432639;432640;432641;432642;432643;432644;432645;432646;432647 265742;265743;265744;265745;265746;265747;265748;265749;265750;265751;265752;265753 265742 12 YDYNNPFGALHK Unmodified 1437.6677 0.66771383 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 3 1 2 2 1 1 1 1 1 1 2 2 2 31.759 30.206 2;3 2.5501E-05 13571 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 84.605 82.112 436210000 0 0 1536900 0 0 0 54605000 45479000 43115000 22082000 12119000 15026000 33384000 48150000 49856000 5431900 4781800 4086500 31713000 21344000 28199000 5330300 4484100 5489500 23261 600 22537 432648;432649;432650;432651;432652;432653;432654;432655;432656;432657;432658;432659;432660;432661;432662;432663;432664;432665;432666;432667;432668;432669;432670;432671;432672;432673;432674;432675 265754;265755;265756;265757;265758;265759;265760;265761;265762;265763;265764;265765;265766;265767;265768;265769;265770;265771;265772 265772 19 YDYSNPATLFTLSDIGVSAHR Unmodified 2326.123 0.12297527 1877 P76578 yfhM Uncharacterized lipoprotein YfhM yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 51.64 50.421 3 1.6793E-10 20443 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 98.816 97.818 32809000 0 0 0 0 0 0 0 0 0 10155000 7257200 6325400 0 0 0 2188900 0 0 0 0 0 6881700 0 0 23262 1877 22538 432676;432677;432678;432679;432680 265773;265774 265773 2 YEAAKDEEFTLQEFLTTCR Unmodified 2350.0787 0.078727191 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 1 1 1 1 1 1 47.715 46.257 2;3 2.5722E-67 22670 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 365.73 357.17 871600000 183460000 185230000 143590000 0 0 0 83452000 96820000 85928000 0 0 0 18100000 19078000 17511000 0 0 0 16017000 12082000 10345000 0 0 0 23263 757 22539 432681;432682;432683;432684;432685;432686;432687;432688;432689;432690;432691;432692;432693;432694;432695;432696;432697;432698 265775;265776;265777;265778;265779;265780;265781;265782;265783;265784;265785;265786;265787;265788;265789;265790 265784 16 YEDEINKR Unmodified 1065.5091 0.50908792 11;17;14;8;3 CON__P04264;CON__H-INV:HIT000016045;CON__P35908;CON__Q7Z794;CON__P48668;CON__P02538;CON__P04259;CON__Q8VED5;CON__P05787;CON__P13647;CON__ENSEMBL:ENSBTAP00000038253 no no 0 0 1 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 11.1 11.667 2 0.0001429 2452 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 158.36 154 95641000 0 0 0 2527200 2897400 2277700 0 1856900 0 21759000 18831000 18832000 0 0 0 0 0 0 0 0 0 0 12629000 14031000 + 23264 11;17;8;14;3 22540 432699;432700;432701;432702;432703;432704;432705;432706;432707 265791;265792;265793 265792 3 YEDESLNLGDYVEDQIESVTFDR Unmodified 2735.2086 0.20861497 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 55.389 54.132 2;3 2.1021E-135 21662 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 396.01 391.77 5301100000 62487000 41700000 52269000 0 0 0 23708000 22313000 18341000 219980000 170850000 191290000 70096000 62516000 57727000 799880000 973780000 1320600000 60928000 51525000 64156000 360010000 371400000 305620000 23265 935 22541 432708;432709;432710;432711;432712;432713;432714;432715;432716;432717;432718;432719;432720;432721;432722;432723;432724;432725;432726;432727;432728;432729;432730;432731;432732;432733;432734;432735;432736;432737;432738;432739;432740;432741;432742;432743;432744;432745;432746;432747;432748;432749 265794;265795;265796;265797;265798;265799;265800;265801;265802;265803;265804;265805;265806;265807;265808;265809;265810;265811;265812 265809 19 YEDFELGGTFK Unmodified 1304.5925 0.5924832 209 P09169 ompT Protease 7 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.575 36.717 2 0.00023139 12899 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 100.48 98.668 60170000 0 0 4765400 3203800 2467900 2241800 0 0 0 2738100 2470400 2392500 3492700 3721700 3808300 0 0 0 6826700 4953400 6119400 3829800 3201100 3936900 23266 209 22542 432750;432751;432752;432753;432754;432755;432756;432757;432758;432759;432760;432761;432762;432763;432764;432765 265813 265813 1 YEDIDVLDFR Unmodified 1283.6034 0.60338224 609 P0AAS0 ylaC Inner membrane protein YlaC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 46.624 45.053 2 3.4007E-07 21956 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 176.79 171.83 134670000 0 0 0 0 0 0 8433500 6487300 8556500 0 0 1653300 14239000 10958000 12028000 0 0 0 24263000 24977000 23075000 0 0 0 23267 609 22543 432766;432767;432768;432769;432770;432771;432772;432773;432774;432775 265814;265815;265816;265817;265818;265819 265815 6 YEDPDKE Unmodified 894.36069 0.36069235 604 P0AAN5 yaiA Uncharacterized protein YaiA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.943 11.736 2 0.016441 2889 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.097 84.097 123540000 24698000 21272000 17782000 0 0 0 14575000 14772000 16222000 0 0 0 0 3159200 2750500 0 0 0 4275900 0 4034000 0 0 0 23268 604 22544 432776;432777;432778;432779;432780;432781;432782;432783;432784;432785 265820;265821;265822 265822 3 YEEHWNLAK Unmodified 1188.5564 0.55637247 161 P07395 pheT Phenylalanine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 1 1 1 1 1 1 2 2 2 2 2 2 1 18.401 18.935 2;3 5.0956E-07 7061 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 194.22 181.87 2027300000 190140000 176470000 195890000 660640 503540 1304200 103480000 109160000 67502000 1057600 990910 1114500 186320000 157070000 140280000 0 0 0 218220000 241910000 234580000 663980 0 0 23269 161 22545 432786;432787;432788;432789;432790;432791;432792;432793;432794;432795;432796;432797;432798;432799;432800;432801;432802;432803;432804;432805;432806;432807;432808;432809;432810;432811;432812;432813;432814 265823;265824;265825;265826;265827;265828;265829;265830;265831;265832;265833;265834;265835;265836;265837;265838 265828 16 YEEITASCSCGNVMK Unmodified 1747.7215 0.72154159 358 P0A7M9 rpmE 50S ribosomal protein L31 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 1 1 2 22.856 22.258 2;3 5.3525E-27 9058 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 233.54 230.01 3232800000 398240000 409330000 349030000 27318000 32527000 28269000 123290000 132580000 121190000 14986000 28666000 37589000 196510000 163720000 154210000 16170000 19740000 16026000 265030000 289160000 300490000 32841000 33145000 42701000 23270 358 22546 432815;432816;432817;432818;432819;432820;432821;432822;432823;432824;432825;432826;432827;432828;432829;432830;432831;432832;432833;432834;432835;432836;432837;432838;432839;432840;432841;432842;432843;432844;432845;432846;432847;432848;432849;432850;432851;432852;432853;432854;432855 265839;265840;265841;265842;265843;265844;265845;265846;265847;265848;265849;265850;265851;265852;265853;265854;265855;265856;265857;265858;265859;265860;265861;265862;265863;265864;265865;265866;265867;265868;265869;265870;265871;265872;265873 265870 35 YEELQITAGR Unmodified 1178.5932 0.5931519 11 CON__P04264 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 4 4 4 1 1 2 2 3 2 26.563 25.203 2;3 2.8772E-13 7700 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 224.24 199.32 1456300000 0 0 0 36298000 35361000 34395000 3431300 0 0 229880000 281260000 295640000 0 0 0 24855000 33429000 28336000 0 0 0 165400000 143710000 144290000 + 23271 11 22547 432856;432857;432858;432859;432860;432861;432862;432863;432864;432865;432866;432867;432868;432869;432870;432871;432872;432873;432874;432875;432876;432877;432878;432879;432880;432881;432882 265874;265875;265876;265877;265878;265879;265880;265881;265882;265883;265884;265885;265886;265887;265888;265889;265890;265891;265892;265893;265894;265895;265896;265897;265898;265899;265900 265875 26 YEELQQTAGR Unmodified 1193.5677 0.56766543 14 CON__P13647 no no 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.468 14.799 2 2.8772E-13 3934 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 224.24 203.72 92003000 0 0 0 2994200 2833100 3001000 0 0 0 17506000 15290000 14288000 0 0 0 2432000 1688000 1989900 0 0 0 10720000 9910900 9349400 + 23272 14 22548 432883;432884;432885;432886;432887;432888;432889;432890;432891;432892;432893;432894 265901;265902;265903;265904;265905;265906;265907 265902 7 YEELQVTVGR Unmodified 1192.6088 0.60880197 17 CON__P35908 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 26.893 25.84 2 3.4007E-07 8532 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 176.79 152.64 132550000 0 0 0 6359000 8601400 6780400 0 0 0 8248500 0 0 0 0 0 7931600 6570500 9397700 0 0 0 27007000 27390000 24262000 + 23273 17 22549 432895;432896;432897;432898;432899;432900;432901;432902;432903;432904 265908;265909;265910;265911;265912;265913;265914;265915 265914 6 YEGEIIQSDRPGENILLFK Unmodified 2220.1426 0.14264808 1264 P25553 aldA Lactaldehyde dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 42.058 40.359 2;3 3.426E-29 19593 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 216 194.75 4625700000 1027300000 1060200000 981610000 0 0 0 163490000 151980000 133860000 0 0 0 121090000 107360000 113150000 0 0 0 262310000 256440000 246880000 0 0 0 23274 1264 22550 432905;432906;432907;432908;432909;432910;432911;432912;432913;432914;432915;432916;432917;432918;432919;432920;432921;432922;432923;432924;432925;432926;432927;432928 265916;265917;265918;265919;265920;265921;265922;265923;265924;265925;265926;265927;265928;265929;265930;265931;265932;265933;265934;265935 265924 18 YEGFGPNGSMIIAETLTSNVNR Unmodified 2369.1322 0.13215975 413 P0A8A2 yeeN Probable transcriptional regulatory protein YeeN yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.516 51.268 2 2.2116E-22 24841 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 178.47 167.03 186850000 10719000 10061000 8904400 0 0 0 18970000 19147000 17632000 0 0 0 13536000 9060700 12691000 0 0 0 21081000 21211000 23838000 0 0 0 23275 413 22551 432929;432930;432931;432932;432933;432934;432935;432936;432937;432938;432939;432940 265936;265937;265938 265937 3 YEGYIAR Unmodified 870.42357 0.42356738 280 P0A6U3 mnmG tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.25 16.089 2 0.0012721 5597 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 132.94 93.18 266580000 21769000 18396000 24434000 0 234470 318580 24423000 26865000 22607000 0 0 0 17193000 16697000 17194000 0 0 0 28113000 25499000 22834000 0 0 0 23276 280 22552 432941;432942;432943;432944;432945;432946;432947;432948;432949;432950;432951;432952;432953;432954 265939;265940;265941;265942 265939 3 YEIDKESGALFVDR Unmodified 1640.8046 0.80460124 325 P0A7A9 ppa Inorganic pyrophosphatase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 31.492 30.127 2;3 3.0009E-14 14535 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 190.3 182.65 617360000 15616000 45700000 38248000 0 0 0 63244000 60529000 56962000 0 0 0 50875000 54595000 57460000 0 0 0 62009000 53035000 59091000 0 0 0 23277 325 22553 432955;432956;432957;432958;432959;432960;432961;432962;432963;432964;432965;432966;432967;432968;432969;432970;432971;432972;432973;432974;432975;432976;432977 265943;265944;265945;265946;265947;265948;265949;265950;265951;265952;265953;265954;265955;265956;265957 265943 15 YELGTAYGHIALSVDNAAEACEK Unmodified 2481.1482 0.14820374 707 P0AC81 gloA Lactoylglutathione lyase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 39.198 37.518 3 0.0011381 18754 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 62.781 61.599 273810000 21931000 23915000 21146000 0 0 0 29350000 39023000 31615000 0 0 0 18014000 18125000 18378000 0 0 0 28103000 0 24210000 0 0 0 23278 707 22554 432978;432979;432980;432981;432982;432983;432984;432985;432986;432987;432988 265958;265959;265960 265958 3 YELHHHVQITDPAIVAAATLSHR Unmodified 2578.3405 0.34045346 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 1 1 1 3 3 3 3 2 3 30.758 29.304 3;4;5 9.541E-16 13842 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.56 150.64 1865200000 186560000 188890000 191270000 5102600 3719600 2881600 314690000 264450000 254430000 7845400 1906500 5383000 82447000 62788000 58257000 0 0 0 78827000 68878000 86849000 0 0 0 23279 1662 22555 432989;432990;432991;432992;432993;432994;432995;432996;432997;432998;432999;433000;433001;433002;433003;433004;433005;433006;433007;433008;433009;433010;433011;433012;433013;433014;433015;433016;433017;433018;433019;433020;433021;433022;433023;433024;433025;433026;433027;433028;433029;433030;433031;433032 265961;265962;265963;265964;265965;265966;265967;265968;265969;265970;265971;265972;265973;265974;265975;265976;265977;265978;265979;265980;265981;265982 265965 15 YELSSFIADFK Unmodified 1318.6445 0.64451877 1683 P64534 rcnB Nickel/cobalt homeostasis protein RcnB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.424 50.177 2 1.7876E-05 24846 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.66 115.23 836940000 80214000 82040000 74025000 0 0 0 71865000 63360000 71176000 0 0 0 68857000 65492000 67918000 0 0 0 68797000 65582000 57613000 0 0 0 23280 1683 22556 433033;433034;433035;433036;433037;433038;433039;433040;433041;433042;433043;433044 265983;265984;265985;265986;265987;265988;265989;265990;265991;265992 265983 10 YEMVNIK Unmodified 895.44734 0.44733929 1596 P51981 ycjG L-Ala-D/L-Glu epimerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 22.659 22.124 2 0.058448 9633 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 61.494 41.932 40336000 8778100 6670900 5561000 0 0 0 0 7183500 8860500 0 0 0 0 0 0 0 0 0 0 0 3282100 0 0 0 23281 1596 22557 433045;433046;433047;433048;433049;433050 265993;265994 265994 2 YENEVALR Unmodified 992.49271 0.49270958 13 CON__P13645 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 17.502 17.768 2 0.0027006 4798 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 98.299 69.787 113590000 0 0 0 11723000 9289700 10791000 0 0 0 6839700 6877400 6848300 0 0 0 0 0 0 0 0 0 19239000 22922000 19054000 + 23282 13 22558 433051;433052;433053;433054;433055;433056;433057;433058;433059 265995;265996;265997 265996 2 YENGKYDIK Unmodified 1128.5451 0.54513908 895 P0AEX9 malE Maltose-binding periplasmic protein yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 11.955 12.822 2 0.00038166 3627 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 124.74 101.22 80593000 0 0 0 0 0 0 8950300 8870000 9085100 0 0 0 0 6701600 8215400 0 0 0 13304000 13871000 11595000 0 0 0 23283 895 22559 433060;433061;433062;433063;433064;433065;433066;433067 265998;265999;266000;266001;266002;266003;266004 266001 5 YEPDEENPMLGFR Unmodified 1595.6926 0.69260795 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 39.315 37.637 2 1.2765E-12 17410 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 195.7 191.81 1443100000 158640000 160550000 135510000 3946800 4652300 4318100 92190000 86230000 94695000 11638000 8263400 10931000 85373000 85374000 79323000 4918100 0 3042100 134540000 130330000 126430000 6278200 9666800 6259400 23284 1210 22560 433068;433069;433070;433071;433072;433073;433074;433075;433076;433077;433078;433079;433080;433081;433082;433083;433084;433085;433086;433087;433088;433089;433090;433091 266005;266006;266007;266008;266009;266010;266011;266012;266013;266014;266015;266016;266017;266018;266019;266020;266021;266022;266023;266024;266025;266026 266026 22 YEPDVSAQGELILNEK Unmodified 1803.8891 0.88905915 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 1 1 1 37.846 36.207 2 2.8996E-08 17328 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 120.59 118.17 107790000 7698000 11763000 11031000 0 0 0 13137000 10355000 9904100 0 0 0 6560200 5984700 6607000 0 0 0 7720000 8982300 8047900 0 0 0 23285 1215 22561 433092;433093;433094;433095;433096;433097;433098;433099;433100;433101;433102;433103;433104;433105 266027;266028;266029;266030;266031;266032;266033;266034;266035 266031 9 YEPIPVQNVEPTLGIGAPTDK Unmodified 2237.158 0.15796379 1856 P76403 yegQ Uncharacterized protease YegQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 46.405 44.915 2 2.0099E-27 21905 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 180.74 179.02 319100000 27599000 21682000 17926000 0 0 0 29347000 21848000 23968000 0 0 0 25606000 22468000 23876000 0 0 0 36748000 36153000 31879000 0 0 0 23286 1856 22562 433106;433107;433108;433109;433110;433111;433112;433113;433114;433115;433116;433117 266036;266037;266038;266039;266040;266041;266042;266043;266044;266045;266046;266047 266043 12 YEQEIDVR Unmodified 1050.4982 0.49818889 935 P0AFF6 nusA Transcription termination/antitermination protein NusA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.657 18.047 2 0.00042084 4873 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 140.09 105.27 803460000 37698000 36931000 32189000 0 0 0 3728900 4088800 2698800 32725000 28895000 27488000 29444000 31602000 29878000 82733000 55348000 58542000 36370000 30211000 31506000 73643000 69919000 67821000 23287 935 22563 433118;433119;433120;433121;433122;433123;433124;433125;433126;433127;433128;433129;433130;433131;433132;433133;433134;433135;433136;433137;433138 266048;266049;266050;266051;266052;266053;266054;266055;266056;266057;266058;266059;266060;266061;266062;266063;266064 266049 17 YEQLAEAIR Unmodified 1091.5611 0.56112349 741 P0ACQ4 oxyR Hydrogen peroxide-inducible genes activator yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 24.179 23.475 2 0.017614 10339 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 65.305 47.92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23288 741 22564 433139;433140;433141 266065;266066;266067 266065 3 YESLFAQLK Unmodified 1097.5757 0.57571092 404 P0A877 trpA Tryptophan synthase alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 38.122 36.403 2 6.464E-05 17580 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 126.28 115.86 638520000 164100000 151610000 141050000 1346600 1311800 1469300 25520000 27820000 25360000 0 0 0 22709000 21350000 17699000 0 0 0 2556200 0 34275000 347630 0 0 23289 404 22565 433142;433143;433144;433145;433146;433147;433148;433149;433150;433151;433152;433153;433154;433155;433156;433157;433158 266068;266069;266070;266071;266072;266073;266074;266075;266076;266077 266070 10 YETIDAPQIDDLMAR Unmodified 1749.8244 0.82435041 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46 44.556 2 9.5374E-12 17799 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 214.26 207.56 1114000000 39390000 38643000 37962000 11684000 14585000 13811000 96187000 91452000 77804000 35328000 31997000 37115000 69148000 72280000 73504000 11419000 8732300 6856100 91312000 103500000 93902000 19672000 18034000 19688000 23290 595 22566 433159;433160;433161;433162;433163;433164;433165;433166;433167;433168;433169;433170;433171;433172;433173;433174;433175;433176;433177;433178;433179;433180;433181;433182 266078;266079;266080;266081;266082;266083;266084;266085;266086;266087;266088;266089;266090;266091;266092;266093;266094;266095;266096;266097;266098;266099;266100 266082 23 YETLHADR Unmodified 1003.4723 0.47230849 1073 P11875 argS Arginine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 11.394 12.271 2 0.00088175 3190 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.17 111.5 354720000 0 38136000 0 0 0 0 0 33220000 35659000 0 0 0 44001000 30649000 38246000 0 0 0 45884000 43437000 45487000 0 0 0 23291 1073 22567 433183;433184;433185;433186;433187;433188;433189;433190;433191;433192 266101;266102;266103;266104;266105;266106;266107 266103 6 YETPDEAEADIR Unmodified 1407.6154 0.61540349 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS 1 1 1 23.437 22.933 2 3.83E-05 9724 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 126.39 126.03 264100000 86137000 93507000 84461000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23292 1374 22568 433193;433194;433195 266108;266109 266109 2 YETPDEAEADIRK Unmodified 1535.7104 0.71036651 1374 P31660 prpC 2-methylcitrate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 18.347 18.946 3 2.759E-05 7150 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 76.262 76.22 71292000 25692000 20908000 24693000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23293 1374 22569 433196;433197;433198 266110;266111;266112 266110 3 YETVTAEELLSPMADK Unmodified 1795.855 0.85498183 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.067 44.559 2 3.5791E-10 17565 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 176.51 170.66 622390000 16362000 16902000 13243000 3302700 3743700 3270200 31585000 34176000 34996000 12343000 11011000 13360000 37627000 41911000 35362000 0 4086200 2369300 49539000 57079000 51778000 47686000 47203000 53453000 23294 205 22570 433199;433200;433201;433202;433203;433204;433205;433206;433207;433208;433209;433210;433211;433212;433213;433214;433215;433216;433217;433218;433219;433220;433221 266113;266114;266115;266116;266117;266118;266119;266120;266121;266122;266123;266124;266125;266126;266127;266128;266129 266122 15 YEVISTLSK Unmodified 1038.5597 0.55972651 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 25.79 24.957 2 0.00073871 10638 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 99.802 88.974 330340000 65403000 58601000 61369000 6929100 0 0 0 0 0 0 743120 592000 0 0 0 46429000 41508000 48765000 0 0 0 0 0 0 23295 1057 22571 433222;433223;433224;433225;433226;433227;433228;433229;433230;433231;433232 266130;266131;266132;266133;266134;266135;266136;266137;266138 266137 9 YEVNNMLLK Unmodified 1122.5743 0.57433072 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31.17 30.079 2 0.00021992 14478 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 124.83 95.458 2801700000 137050000 159100000 121100000 0 0 0 242530000 238450000 241810000 0 0 0 228640000 222890000 242120000 1394100 723540 991180 319560000 325120000 320220000 0 0 0 23296 337 22572 433233;433234;433235;433236;433237;433238;433239;433240;433241;433242;433243;433244;433245;433246;433247;433248 266139;266140;266141;266142;266143;266144;266145;266146 266140 8 YEVPVIIEAFPETLAGEK Unmodified 2004.0456 0.045559794 1744 P69795 chbB N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.665 53.213 2 1.8828E-09 25328 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 153.81 146.44 272550000 22649000 0 19815000 0 0 0 23701000 25361000 23398000 0 0 0 27708000 31953000 29787000 0 0 0 24308000 21881000 21992000 0 0 0 23297 1744 22573 433249;433250;433251;433252;433253;433254;433255;433256;433257;433258;433259 266147;266148;266149;266150;266151 266149 5 YEWVQTR Unmodified 980.47158 0.4715802 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 22.554 21.912 2 0.0028019 9558 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.63 104.18 1307200000 3790000 0 0 0 0 0 335120000 288110000 283030000 0 0 0 135480000 120300000 0 0 0 0 0 141410000 0 0 0 0 23298 1086 22574 433260;433261;433262;433263;433264;433265;433266 266152;266153 266152 2 YEYSVAEYYTER Unmodified 1571.678 0.67800374 690 P0AC02 bamD Outer membrane protein assembly factor BamD yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.263 31.78 2 5.3998E-07 14997 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 154.35 150.05 91964000 0 0 0 1696400 2123400 1570300 3902200 5480200 0 6259800 4822300 6072100 4755500 4647600 4226800 1406100 1262800 1605800 9412900 11832000 12806000 2578500 2276500 3227200 23299 690 22575 433267;433268;433269;433270;433271;433272;433273;433274;433275;433276;433277;433278;433279;433280;433281;433282;433283;433284;433285;433286 266154;266155;266156;266157;266158;266159 266159 6 YFADHETGR Unmodified 1094.4781 0.47812215 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By MS/MS By MS/MS 1 1 11.832 12.507 2 2.3844E-05 3427 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 155.75 141.6 115470000 62672000 52795000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23300 1107 22576 433287;433288 266160;266161 266160 2 YFAETTALRPDCAIIGEPTSLQPVR Unmodified 2804.4167 0.41671445 1229 P23908 argE Acetylornithine deacetylase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 43.752 42.138 3 3.2457E-31 20782 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 199.75 193.65 352550000 42017000 32620000 31533000 0 0 0 36986000 31452000 29854000 1431400 0 0 26906000 21232000 18180000 0 0 0 26007000 25454000 28879000 0 0 0 23301 1229 22577 433289;433290;433291;433292;433293;433294;433295;433296;433297;433298;433299;433300;433301 266162;266163;266164;266165;266166;266167;266168;266169;266170 266164 9 YFAHDIR Unmodified 920.45045 0.45045083 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.342 14.051 2 0.0059588 4381 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 97.473 62.272 966300000 131340000 117720000 117740000 1535500 1708000 1817300 70160000 51857000 53993000 2023900 2201700 1504200 77148000 72376000 62623000 0 0 0 63233000 58765000 72100000 3545700 0 2906200 23302 696;1097 22578 433302;433303;433304;433305;433306;433307;433308;433309;433310;433311;433312;433313;433314;433315;433316;433317;433318;433319;433320;433321 266171;266172;266173 266171 3 YFASCIR Unmodified 915.42727 0.42727255 1486 P37685 aldB Aldehyde dehydrogenase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 19.657 20.094 2 0.0006293 7675 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 149.06 149.06 731650000 203640000 175990000 164410000 2067200 0 0 60580000 51212000 48871000 0 0 0 0 0 4359800 0 0 0 10729000 0 9786800 0 0 0 23303 1486 22579 433322;433323;433324;433325;433326;433327;433328;433329;433330;433331 266174;266175;266176;266177;266178;266179;266180 266178 7 YFATGAATPGAANADATFK Unmodified 1843.8741 0.87407779 87 P04128 fimA Type-1 fimbrial protein, A chain yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 2 1 1 1 1 1 1 1 1 2 2 2 30.879 29.36 2;3 2.2274E-22 11165 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 184.21 180.22 417560000 12745000 12117000 9839500 1597400 1599700 1865300 0 0 0 105100000 101160000 95388000 4369200 3076900 0 1803400 1169100 1033600 5284200 8595100 7174800 16231000 12692000 14721000 23304 87 22580 433332;433333;433334;433335;433336;433337;433338;433339;433340;433341;433342;433343;433344;433345;433346;433347;433348;433349;433350;433351;433352;433353;433354;433355;433356;433357;433358 266181;266182;266183;266184;266185;266186;266187;266188;266189;266190;266191 266183 11 YFDALALQYK Unmodified 1230.6285 0.62847478 1289 P27128 rfaI Lipopolysaccharide 1,3-galactosyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 42.021 39.97 2 0.0022544 16035 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 92.439 86.127 33296000 4614800 0 0 0 0 0 5506800 0 6133200 2690900 2945600 1782800 0 4511600 2702100 0 0 0 0 0 0 1384700 0 1023400 23305 1289 22581 433359;433360;433361;433362;433363;433364;433365;433366;433367;433368 266192 266192 1 YFDKVPMK Unmodified 1026.5208 0.52083858 512 P0A9D8 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.772 18.437 2 0.0010703 6845 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 130.27 129.27 391490000 33489000 36277000 28869000 0 0 0 33280000 33230000 31376000 0 0 0 32765000 25565000 25014000 0 0 0 37966000 40498000 33163000 0 0 0 23306 512 22582 433369;433370;433371;433372;433373;433374;433375;433376;433377;433378;433379;433380 266193;266194;266195;266196;266197;266198;266199;266200;266201;266202;266203 266195 10 YFELWPR Unmodified 1009.5022 0.50215205 1248 P24252 ybgA Uncharacterized protein YbgA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 44.487 42.972 2 0.0045644 21026 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 103.29 93.299 38151000 5546600 5572000 3904800 0 0 0 4110400 3221800 3239200 0 0 0 1570000 1868100 1598400 0 0 0 2715000 2409900 2395100 0 0 0 23307 1248 22583 433381;433382;433383;433384;433385;433386;433387;433388;433389;433390;433391;433392 266204;266205;266206;266207 266205 1 YFEQLAWR Unmodified 1111.5451 0.5450795 1767 P75745 ybgK Uncharacterized protein YbgK yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 38.775 37.095 2 7.3797E-05 17844 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 166.34 147.55 129280000 19990000 18535000 15585000 0 0 0 13303000 11606000 12896000 0 0 0 5589400 5884200 5518100 0 0 0 10310000 0 10060000 0 0 0 23308 1767 22584 433393;433394;433395;433396;433397;433398;433399;433400;433401;433402;433403 266208 266208 1 YFFSSHVNTEGGGEASSTAIR Unmodified 2216.0134 0.013424818 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 26.356 25.914 3 1.6049E-15 8538 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 148.69 138.19 161990000 0 15077000 13084000 0 0 0 0 0 0 0 0 0 5396100 0 0 45205000 38272000 44952000 0 0 0 0 0 0 23309 1249 22585 433404;433405;433406;433407;433408;433409 266209;266210;266211 266209 3 YFGDGTGVGLR Unmodified 1140.5564 0.55637247 217 P09551 argT Lysine/arginine/ornithine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 30.196 28.84 2 2.6888E-05 13520 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 157.91 144.26 1361000000 418720000 427740000 384010000 0 0 0 11072000 13151000 11824000 0 0 0 11522000 11227000 11670000 0 0 0 19564000 21395000 19125000 0 0 0 23310 217 22586 433410;433411;433412;433413;433414;433415;433416;433417;433418;433419;433420;433421 266212;266213;266214;266215;266216 266213 4 YFGTSDMEYGK Oxidation (M) 1312.5282 0.52816838 256 P0A6K6 deoB Phosphopentomutase yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 2 1 2 2 2 2 2 1 1 1 1 1 20.834 21.111 2 0.0019881 9246 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 78.556 78.556 83481000 7681200 4473400 5288500 0 0 0 15468000 14657000 12590000 0 0 0 5389200 4202600 2761900 0 0 0 3363400 4549000 3057100 0 0 0 23311 256 22587 433422;433423;433424;433425;433426;433427;433428;433429;433430;433431;433432;433433;433434;433435;433436;433437;433438;433439 266217;266218;266219;266220 266217 106 3 YFGTSDMEYGK Unmodified 1296.5333 0.53325376 256 P0A6K6 deoB Phosphopentomutase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.247 25.999 2 5.1922E-06 12101 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 152.34 152.34 4115300000 350100000 324690000 299930000 0 0 1068400 500090000 462020000 540490000 0 1391900 1229900 280100000 274940000 255690000 0 0 0 269770000 298690000 255140000 0 0 0 23312 256 22587 433440;433441;433442;433443;433444;433445;433446;433447;433448;433449;433450;433451;433452;433453;433454 266221;266222;266223;266224;266225;266226;266227;266228;266229;266230;266231 266221 10 YFIEQIAR Unmodified 1038.5498 0.54983053 691 P0AC13 folP Dihydropteroate synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 32.532 31.112 2 0.0031836 14169 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 94.262 83.848 198120000 0 0 0 0 0 0 20086000 25919000 23325000 0 0 0 16409000 15738000 24965000 0 0 0 30999000 0 40680000 0 0 0 23313 691 22588 433455;433456;433457;433458;433459;433460;433461;433462;433463;433464 266232;266233;266234;266235 266235 4 YFLELIR Unmodified 952.5382 0.53820321 1060 P10443 dnaE DNA polymerase III subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.152 43.735 2 0.0010668 21112 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.44 116.46 62166000 4977100 4954600 5665100 0 0 0 6134600 4742500 4194000 0 0 0 3454900 3499200 3613500 0 0 0 6821000 7479000 6630600 0 0 0 23314 1060 22589 433465;433466;433467;433468;433469;433470;433471;433472;433473;433474;433475;433476 266236;266237;266238;266239;266240;266241;266242;266243;266244;266245 266243 10 YFLMSGHYR Unmodified 1172.5437 0.54369929 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 23.762 22.957 2;3 1.0773E-07 10139 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 182.13 122.92 719610000 52428000 49441000 45765000 0 0 0 47622000 55244000 59899000 0 0 0 68780000 60584000 54443000 0 0 0 76008000 70275000 79123000 0 0 0 23315 1188 22590 433477;433478;433479;433480;433481;433482;433483;433484;433485;433486;433487;433488;433489;433490;433491;433492;433493;433494;433495;433496;433497;433498;433499;433500 266246;266247;266248;266249;266250;266251;266252;266253;266254;266255;266256;266257;266258;266259;266260;266261;266262;266263;266264;266265;266266 266253 21 YFMAAGAIGALYK Unmodified 1374.7006 0.70059386 1117 P16095 sdaA L-serine dehydratase 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.609 44.253 2 6.1633E-05 15716 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 92.062 88.045 283740000 11820000 13026000 9962200 0 0 1457600 28341000 27724000 23584000 0 0 0 26338000 24659000 21678000 2332500 0 0 33773000 29823000 29221000 0 0 0 23316 1117 22591 433501;433502;433503;433504;433505;433506;433507;433508;433509;433510;433511;433512;433513;433514 266267;266268 266268 1 YFMGDKPTLMSATEWGR Unmodified 1988.9125 0.91245391 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 40.4 38.779 3 1.4448E-10 18678 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.92 111.74 114770000 16619000 19794000 14366000 0 0 0 5363200 0 6087800 0 0 0 9294600 6903300 7748500 0 0 0 8463700 10122000 10004000 0 0 0 23317 1006 22592 433515;433516;433517;433518;433519;433520;433521;433522;433523;433524;433525 266269;266270;266271;266272;266273 266271 5 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK Unmodified 3944.843 0.84298394 574 P0AA43 rsuA Ribosomal small subunit pseudouridine synthase A yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 53.406 51.991 4 1.9597E-10 25522 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 104.66 104.66 85591000 16733000 13116000 20781000 1505800 1927400 2487200 0 0 3388500 6566800 0 6491000 0 0 5446100 0 0 0 3568900 0 3580300 0 0 0 23318 574 22593 433526;433527;433528;433529;433530;433531;433532;433533;433534;433535;433536;433537 266274 266274 1 YFNLPTILTTSFETGPNGPLVPELK Unmodified 2747.4422 0.44218414 1179 P21367 ycaC Uncharacterized protein YcaC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.555 54.067 3 3.1404E-15 26797 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 137.72 136.9 431090000 105410000 76925000 88821000 0 0 0 27242000 28072000 25852000 6217800 6537900 7938100 9258400 7115300 6843500 0 0 0 11598000 11056000 12203000 0 0 0 23319 1179 22594 433538;433539;433540;433541;433542;433543;433544;433545;433546;433547;433548;433549;433550;433551;433552 266275;266276;266277 266276 3 YFNSQIAQEYK Unmodified 1389.6565 0.65648044 1863 P76491 yfbR 5'-deoxynucleotidase YfbR yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.151 24.897 2 8.3001E-08 10696 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 174.41 160.81 147750000 16419000 12310000 13469000 1563400 1264900 1376200 12793000 10876000 10775000 3855600 2827400 2804900 7766500 8258400 6093900 0 0 0 11849000 11201000 9999400 2248200 0 0 23320 1863 22595 433553;433554;433555;433556;433557;433558;433559;433560;433561;433562;433563;433564;433565;433566;433567;433568;433569;433570;433571 266278;266279;266280;266281;266282;266283;266284;266285;266286;266287;266288 266288 11 YFNVYGPR Unmodified 1014.4923 0.49231565 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.21 25.914 2 0.00011007 11722 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 159.14 150.8 2113900000 145040000 146940000 118580000 1297200 1534200 1980300 209960000 197330000 211090000 25254000 22553000 22210000 158340000 150990000 136200000 0 0 1203200 185430000 187010000 184150000 2878000 1974900 1928600 23321 1716 22596 433572;433573;433574;433575;433576;433577;433578;433579;433580;433581;433582;433583;433584;433585;433586;433587;433588;433589;433590;433591;433592;433593 266289;266290;266291;266292;266293;266294;266295;266296;266297;266298;266299;266300;266301;266302;266303 266296 15 YFPALLTGEQVSSLK Unmodified 1651.8821 0.88212328 654 P0ABF6 cdd Cytidine deaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 47.223 45.807 2;3 2.5047E-11 22103 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 196.44 193.14 5368200000 63254000 61194000 54531000 0 0 0 902210000 886110000 851530000 0 702640 0 439080000 422840000 430310000 0 0 0 442070000 425080000 389300000 0 0 0 23322 654 22597 433594;433595;433596;433597;433598;433599;433600;433601;433602;433603;433604;433605;433606;433607;433608;433609;433610;433611;433612;433613;433614;433615;433616;433617;433618 266304;266305;266306;266307;266308;266309;266310;266311;266312;266313;266314;266315;266316;266317;266318;266319;266320;266321;266322;266323;266324;266325;266326;266327 266316 23 YFPDATILALTTNEK Unmodified 1695.872 0.87195252 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 4 4 2 3 2 47.083 46.062 2;3 6.9372E-15 24272 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 184.27 176.2 1433100000 94003000 76060000 81652000 0 0 0 154800000 141260000 143090000 0 0 0 106730000 115010000 115840000 0 0 0 122220000 169780000 112630000 0 0 0 23323 771 22598 433619;433620;433621;433622;433623;433624;433625;433626;433627;433628;433629;433630;433631;433632;433633;433634;433635;433636;433637;433638;433639;433640;433641;433642;433643;433644;433645;433646;433647 266328;266329;266330;266331;266332;266333;266334;266335;266336;266337;266338;266339;266340;266341;266342;266343;266344;266345;266346;266347;266348;266349;266350;266351 266342 24 YFPTTELAQIGDETADGIYHPTEFSPLSHFDAR Unmodified 3724.7322 0.73217116 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 52.596 51.348 4 2.0704E-26 23972 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 179.49 177.94 1131600000 101800000 104360000 87387000 0 0 0 87512000 90866000 78231000 0 0 0 90389000 78431000 88420000 0 0 0 104590000 104210000 115400000 0 0 0 23324 828 22599 433648;433649;433650;433651;433652;433653;433654;433655;433656;433657;433658;433659 266352;266353;266354;266355;266356;266357;266358;266359;266360;266361;266362;266363 266363 12 YFPVYANDGK Unmodified 1172.5502 0.55022446 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.15 25.213 2 0.00042297 10749 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 104.06 104.06 1665800000 155800000 141400000 153420000 4185700 3247600 3486000 148860000 149340000 144490000 0 0 0 94794000 109980000 98628000 3389300 1965900 1673800 175600000 165780000 109760000 0 0 0 23325 62 22600 433660;433661;433662;433663;433664;433665;433666;433667;433668;433669;433670;433671;433672;433673;433674;433675;433676;433677;433678 266364;266365;266366;266367;266368;266369;266370;266371;266372;266373;266374;266375;266376;266377;266378;266379;266380 266380 17 YFQSDNAADKLVPEGIEGR Unmodified 2108.0174 0.017447563 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.29 31.961 3 6.4956E-05 12133 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 76.768 74.899 118850000 7540300 6742100 8100800 2125900 2392400 2044500 0 5425100 4324700 0 0 2493400 5366700 5093300 6670700 2499200 1585100 1705200 7306000 10576000 12951000 7257100 8580800 8073800 23326 788 22601 433679;433680;433681;433682;433683;433684;433685;433686;433687;433688;433689;433690;433691;433692;433693;433694;433695;433696;433697;433698;433699 266381;266382;266383 266381 3 YFREEFEAGIK Unmodified 1387.6772 0.67721588 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 25.75 24.389 3 0.016137 8906 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 49.081 46.294 53836000 0 0 0 0 642280 0 5514600 0 4307500 4602400 4619700 5397500 0 0 0 0 0 0 0 6337500 5797700 6160700 4473400 5982300 23327 1383 22602 433700;433701;433702;433703;433704;433705;433706;433707;433708;433709;433710 266384;266385 266384 2 YFREEFEAGIKQPFSNTHLINGIQPNLLK Unmodified 3402.7725 0.77246026 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 2 By MS/MS By matching By MS/MS 1 1 1 43.344 41.724 4 0.081762 14784 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 31.896 31.84 8830300 0 0 0 2861700 2442300 3526300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23328 1383 22603 433711;433712;433713 266386;266387 266386 2 YFSVVIGGDDVQNK Unmodified 1539.7569 0.75692277 1394 P32662 gph Phosphoglycolate phosphatase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 2 1 1 1 1 1 36.635 35.004 2 8.1353E-08 17333 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 135.8 125.91 246140000 13861000 16006000 13586000 0 0 0 25403000 21010000 26215000 0 0 0 23692000 20559000 13921000 0 0 0 27630000 25213000 19040000 0 0 0 23329 1394 22604 433714;433715;433716;433717;433718;433719;433720;433721;433722;433723;433724;433725;433726 266388;266389;266390 266388 3 YFTLNAVSK Unmodified 1041.5495 0.54949617 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.105 27.894 2 0.00022968 12976 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.98 119.97 2616600000 163260000 135700000 147930000 945900 1050700 999420 243260000 236920000 213870000 0 0 0 202650000 199380000 209440000 0 461550 0 281690000 302590000 276450000 0 0 0 23330 92 22605 433727;433728;433729;433730;433731;433732;433733;433734;433735;433736;433737;433738;433739;433740;433741;433742 266391;266392;266393;266394;266395;266396;266397;266398;266399;266400;266401;266402 266394 12 YFTPALTTIHQPK Unmodified 1515.8086 0.80856441 740 P0ACP7 purR HTH-type transcriptional repressor PurR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 2 2 2 1 1 1 1 2 1 1 1 28.646 27.223 2;3 8.319E-07 12516 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 109.42 103.18 1089600000 134480000 109230000 110950000 0 1030100 0 76401000 89266000 80494000 0 1170200 0 68588000 65202000 64290000 0 0 0 105690000 93058000 88717000 1070200 0 0 23331 740 22606 433743;433744;433745;433746;433747;433748;433749;433750;433751;433752;433753;433754;433755;433756;433757;433758;433759;433760;433761;433762;433763;433764 266403;266404;266405;266406;266407;266408;266409;266410;266411;266412;266413;266414;266415;266416 266409 14 YFVTGTDTEVGK Unmodified 1315.6296 0.62959699 1081 P13000 bioD1 ATP-dependent dethiobiotin synthetase BioD 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 24.583 23.616 2 0.00011568 10763 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 90.108 81.26 39375000 4310900 4375600 4035600 0 0 0 4524900 0 3944200 0 0 0 3498000 0 2270000 0 0 0 3561900 4400500 4453600 0 0 0 23332 1081 22607 433765;433766;433767;433768;433769;433770;433771;433772;433773;433774 266417;266418;266419;266420;266421;266422 266417 6 YFYEDFAEFDADAAK Unmodified 1800.7519 0.75189697 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 1 2 2 2 49.58 48.175 2;3 2.6636E-11 23451 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.99 159.99 1106100000 63283000 59228000 56372000 0 0 0 103400000 92958000 93063000 0 0 0 117570000 90403000 85327000 0 0 0 115780000 119120000 109570000 0 0 0 23333 92 22608 433775;433776;433777;433778;433779;433780;433781;433782;433783;433784;433785;433786;433787;433788;433789;433790;433791;433792;433793;433794;433795;433796 266423;266424;266425;266426;266427;266428;266429;266430;266431;266432;266433;266434;266435;266436 266426 14 YFYEDFAEFDADAAKK Unmodified 1928.8469 0.84685999 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1 2 2 2 1 1 2 2 2 2 2 2 1 1 1 42.026 40.233 2;3 3.1583E-18 19617 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 186.46 183.44 718110000 40369000 32280000 36642000 1238500 961650 1436300 71138000 66811000 57853000 1260300 0 1022100 60642000 62365000 55380000 0 0 0 72256000 82377000 71604000 995400 604710 877790 23334 92 22609 433797;433798;433799;433800;433801;433802;433803;433804;433805;433806;433807;433808;433809;433810;433811;433812;433813;433814;433815;433816;433817;433818;433819;433820;433821;433822;433823;433824;433825;433826;433827;433828 266437;266438;266439;266440;266441;266442;266443;266444;266445;266446;266447;266448;266449;266450;266451;266452;266453;266454;266455;266456 266445 20 YGADTVR Unmodified 780.37662 0.37661719 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 11.603 12.497 2 0.0023399 3336 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 114.02 34.569 1999900000 147130000 129200000 113550000 1412100 1583200 1219400 187140000 181550000 190330000 0 0 0 158670000 151480000 170520000 0 0 0 206540000 177340000 182230000 0 0 0 23335 170 22610 433829;433830;433831;433832;433833;433834;433835;433836;433837;433838;433839;433840;433841;433842;433843;433844 266457;266458;266459;266460;266461;266462;266463;266464 266458 8 YGAHGTSHFYVTQEAAK Unmodified 1865.8697 0.86966111 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 2 5 4 4 1 1 2 4 4 3 1 2 1 5 5 4 1 13.944 14.684 2;3;4 6.8426E-62 4489 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 364.53 337.82 4810800000 215300000 217870000 112630000 0 2994600 3811300 583760000 585650000 444100000 1570000 1269200 3320500 506520000 537440000 443600000 1350700 2022800 1149100 410430000 368730000 366370000 0 934350 0 23336 224 22611 433845;433846;433847;433848;433849;433850;433851;433852;433853;433854;433855;433856;433857;433858;433859;433860;433861;433862;433863;433864;433865;433866;433867;433868;433869;433870;433871;433872;433873;433874;433875;433876;433877;433878;433879;433880;433881;433882;433883;433884;433885;433886;433887;433888;433889;433890;433891;433892;433893;433894;433895;433896;433897;433898;433899;433900;433901;433902;433903 266465;266466;266467;266468;266469;266470;266471;266472;266473;266474;266475;266476;266477;266478;266479;266480;266481;266482;266483;266484;266485;266486;266487;266488;266489;266490;266491;266492;266493;266494;266495;266496;266497;266498;266499;266500;266501;266502;266503;266504 266474 40 YGAHIFHTNDK Unmodified 1301.6153 0.61528433 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 2 2 2 2 12.184 13.028 2;3 1.5035E-14 3798 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 250.62 232.39 1285200000 54868000 64396000 54548000 0 0 0 101250000 72600000 90277000 0 0 0 116500000 124930000 132120000 0 0 0 179780000 148990000 144960000 0 0 0 23337 1491 22612 433904;433905;433906;433907;433908;433909;433910;433911;433912;433913;433914;433915;433916;433917;433918;433919;433920;433921;433922;433923;433924;433925 266505;266506;266507;266508;266509;266510;266511;266512;266513;266514;266515;266516;266517;266518;266519 266511 15 YGAIPINFDEDSDPAQSIIEQTAGHR Unmodified 2843.3362 0.33621552 1896 P77316 ybdR Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 50.568 49.066 3 3.3821E-05 24117 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 71.54 68.659 66510000 14595000 8373800 16213000 0 0 0 0 11665000 6383900 3960100 1814100 3506100 0 0 0 0 0 0 0 0 0 0 0 0 23338 1896 22613 433926;433927;433928;433929;433930;433931;433932;433933 266520 266520 0 YGAQIIINDITAER Unmodified 1575.8257 0.82567103 545 P0A9P9 idnO Gluconate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 43.044 41.204 2 2.6115E-05 20240 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.66 103.77 22855000 7118700 0 4709500 0 0 0 4534500 3024400 3467800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23339 545 22614 433934;433935;433936;433937;433938 266521;266522 266521 2 YGATVILLGR Unmodified 1061.6233 0.62332982 1382 P31808 yciK Uncharacterized oxidoreductase YciK yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 37.513 35.84 2 6.2079E-06 17861 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 155.75 124.46 147410000 15254000 17839000 16928000 0 0 0 14588000 13345000 12718000 0 0 0 11181000 8866700 7304500 0 0 0 10583000 9969400 8833400 0 0 0 23340 1382 22615 433939;433940;433941;433942;433943;433944;433945;433946;433947;433948;433949;433950 266523;266524;266525;266526;266527;266528;266529;266530;266531 266523 7 YGDEQVK Unmodified 837.38685 0.38684752 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.867 11.689 2 0.0017774 2916 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 123.99 102.72 6159500000 1027000000 791320000 0 0 0 0 581020000 527020000 523000000 0 0 0 373530000 322860000 326120000 0 0 0 524860000 557390000 605390000 0 0 0 23341 1652 22616 433951;433952;433953;433954;433955;433956;433957;433958;433959;433960;433961;433962 266532;266533;266534;266535;266536;266537;266538;266539;266540;266541;266542;266543 266535 12 YGDGGTDINPLYR Unmodified 1439.6681 0.66810776 1154 P18843 nadE NH(3)-dependent NAD(+) synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.387 30.03 2 3.7237E-40 14220 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 280.71 233.1 2235500000 269020000 272200000 215630000 0 0 0 226550000 226720000 235120000 0 0 0 111440000 113410000 104950000 0 0 0 155000000 156520000 148990000 0 0 0 23342 1154 22617 433963;433964;433965;433966;433967;433968;433969;433970;433971;433972;433973;433974 266544;266545;266546;266547;266548;266549;266550;266551;266552;266553;266554 266545 11 YGDGITLIK Unmodified 978.5386 0.53859714 1050 P0DMC7 rcsB Transcriptional regulatory protein RcsB yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.493 29.099 2 0.0054877 13839 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 74.301 16.134 1421800000 143300000 123510000 122630000 2791600 2084300 2618200 112420000 111010000 101650000 11019000 10881000 11606000 92478000 88074000 88113000 4156900 3055100 3216300 114150000 123880000 130120000 6407800 6288800 6377700 23343 1050 22618 433975;433976;433977;433978;433979;433980;433981;433982;433983;433984;433985;433986;433987;433988;433989;433990;433991;433992;433993;433994;433995;433996;433997;433998 266555;266556;266557;266558;266559;266560;266561;266562;266563;266564 266559 10 YGDKVPENLEEQAISLVGEDLYQALIK Unmodified 3033.5546 0.55464772 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 55.724 54.251 3 9.7573E-06 26767 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 81.904 75.809 402800000 17456000 14401000 20223000 0 0 0 28740000 19048000 23630000 0 0 0 38385000 38549000 39391000 0 0 0 45424000 54660000 62893000 0 0 0 23344 1491 22619 433999;434000;434001;434002;434003;434004;434005;434006;434007;434008;434009;434010 266565 266565 1 YGDMINHR Unmodified 1004.4498 0.4497989 1348 P30850 rnb Exoribonuclease 2 yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 12.206 13.039 2 0.00030221 3737 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 146.94 145.87 205730000 23967000 26027000 27178000 0 0 0 16364000 16144000 0 0 0 0 16963000 14388000 18575000 0 0 0 23360000 22759000 0 0 0 0 23345 1348 22620 434011;434012;434013;434014;434015;434016;434017;434018;434019;434020 266566;266567 266566 2 YGEIATR Unmodified 808.40792 0.40791731 1298 P27298 prlC Oligopeptidase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.783 13.618 2 0.00059316 4080 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 150.02 61.285 858130000 88388000 89153000 110990000 0 0 0 93991000 91753000 79269000 0 0 0 60839000 45227000 45995000 0 0 0 70114000 0 82416000 0 0 0 23346 1298 22621 434021;434022;434023;434024;434025;434026;434027;434028;434029;434030;434031 266568;266569;266570;266571;266572;266573;266574;266575;266576;266577 266573 8 YGEMDGYSAEAR Unmodified 1347.5401 0.54013005 558 P0A9U3 ybiT Uncharacterized ABC transporter ATP-binding protein YbiT yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.34 20.72 2 3.7373E-17 8153 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 218.47 218.47 412800000 31366000 31844000 31846000 659760 619800 690670 25793000 25792000 22391000 0 0 0 43393000 38679000 39865000 0 535520 0 35660000 42544000 41121000 0 0 0 23347 558 22622 434032;434033;434034;434035;434036;434037;434038;434039;434040;434041;434042;434043;434044;434045;434046;434047 266578;266579;266580;266581;266582;266583;266584;266585;266586;266587;266588 266582 11 YGENPNR Unmodified 848.37768 0.37767982 61 P00960 glyQ Glycine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9.1623 10.032 2 0.0016551 1084 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 126.16 122.3 899340000 99610000 100980000 102930000 3594300 9545600 3360500 19862000 16517000 16520000 0 0 0 78522000 61805000 76316000 0 0 0 110600000 114310000 84865000 0 0 0 23348 61 22623 434048;434049;434050;434051;434052;434053;434054;434055;434056;434057;434058;434059;434060;434061;434062 266589;266590;266591;266592;266593;266594;266595;266596;266597;266598;266599;266600;266601;266602;266603;266604;266605 266599 15 YGENSHQQAAFYIEENVK Unmodified 2125.9705 0.97049737 1111 P15639 purH Bifunctional purine biosynthesis protein PurH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 1 1 1 1 27.999 26.929 2;3 4.5435E-46 12166 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 270.07 266.92 396620000 94360000 89967000 108110000 0 0 0 0 9557900 11096000 0 0 0 8638400 9757900 13881000 0 0 0 17864000 19485000 13910000 0 0 0 23349 1111 22624 434063;434064;434065;434066;434067;434068;434069;434070;434071;434072;434073;434074;434075;434076 266606;266607;266608;266609;266610;266611;266612;266613;266614;266615;266616 266614 11 YGEPTPQALLESAMR Unmodified 1661.8083 0.80830641 1649 P62620 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.781 47.433 2 1.5132E-12 23023 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 179.19 176.97 504990000 44223000 46990000 34831000 1390300 1537700 1722900 39393000 42953000 39816000 0 0 0 35088000 39163000 33127000 0 0 0 48176000 48494000 43382000 0 2544800 2154300 23350 1649 22625 434077;434078;434079;434080;434081;434082;434083;434084;434085;434086;434087;434088;434089;434090;434091;434092;434093 266617;266618;266619 266618 2 YGEVNTLLAR Unmodified 1134.6033 0.60332266 143 P06993 malT HTH-type transcriptional regulator MalT yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.902 28.282 2 2.1092E-06 10979 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 157.68 135.55 148250000 0 0 0 782600 0 0 16295000 13363000 14018000 10761000 9540300 10625000 9379100 6696200 8335300 0 0 0 18199000 16756000 0 3853600 5068200 4572800 23351 143 22626 434094;434095;434096;434097;434098;434099;434100;434101;434102;434103;434104;434105;434106;434107;434108 266620;266621;266622;266623;266624;266625;266626;266627 266620 5 YGFDAAFGGAR Unmodified 1130.5145 0.51450765 1169 P21156 cysD Sulfate adenylyltransferase subunit 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.356 32.734 2 1.329E-06 14974 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 156.51 145.8 1550300000 100150000 111660000 101090000 2208000 2142700 2349000 100730000 99719000 101370000 0 2521000 2583100 102740000 95542000 104350000 0 0 0 195080000 214980000 201370000 3323000 3509400 2899500 23352 1169 22627 434109;434110;434111;434112;434113;434114;434115;434116;434117;434118;434119;434120;434121;434122;434123;434124;434125;434126;434127;434128 266628;266629;266630;266631;266632;266633;266634;266635;266636;266637;266638;266639;266640;266641;266642;266643 266640 15 YGFDADK Unmodified 814.34973 0.34973373 214 P09424 mtlD Mannitol-1-phosphate 5-dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 16.087 16.903 2 0.0046807 5820 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 102.8 87.165 828470000 52265000 54120000 48787000 0 0 0 119720000 125230000 124190000 0 0 0 69343000 48184000 50458000 0 0 0 47140000 47344000 41694000 0 0 0 23353 214 22628 434129;434130;434131;434132;434133;434134;434135;434136;434137;434138;434139;434140 266644;266645;266646;266647;266648;266649 266648 6 YGFDISR Unmodified 856.40792 0.40791731 1559 P42632 tdcE PFL-like enzyme TdcE yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.089 25.955 2 0.02496 11332 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 72.138 48.166 41441000 0 0 1783200 0 0 0 0 3627100 4644300 0 0 0 6487400 5890700 7227800 0 0 0 3454100 3907500 4419400 0 0 0 23354 1559 22629 434141;434142;434143;434144;434145;434146;434147;434148;434149 266650 266650 1 YGFGSADAMQIMAEAEK Unmodified 1817.7964 0.7964211 1155 P18956 ggt Gamma-glutamyltranspeptidase;Gamma-glutamyltranspeptidase large chain;Gamma-glutamyltranspeptidase small chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 48.098 46.733 2 8.2813E-07 22781 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.45 102.37 72514000 5697500 6684100 4968400 0 0 0 9356700 9312100 7325100 0 0 0 3869600 5367000 4461400 0 0 0 6507500 5210400 3754300 0 0 0 23355 1155 22630 434150;434151;434152;434153;434154;434155;434156;434157;434158;434159;434160;434161 266651;266652;266653;266654;266655 266653 5 YGFIYVNK Unmodified 1002.5175 0.51746776 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.015 29.658 2 0.0010256 13930 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 113.08 103.84 833360000 64172000 67207000 56555000 0 0 0 86554000 78539000 76929000 0 0 0 74059000 78441000 68840000 0 0 0 64099000 57983000 59982000 0 0 0 23356 1956 22631 434162;434163;434164;434165;434166;434167;434168;434169;434170;434171;434172;434173 266656;266657;266658;266659;266660;266661;266662;266663;266664;266665 266660 10 YGFVASGTLNPQK Unmodified 1380.7038 0.70376498 40 P00805 ansB L-asparaginase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 3 2 1 2 1 1 1 29.256 27.967 2 8.3329E-06 13216 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 153.97 141.73 2953200000 8421900 7156600 7831900 0 0 0 496460000 517520000 467200000 0 0 0 292020000 282700000 293130000 0 0 0 209550000 192930000 178300000 0 0 0 23357 40 22632 434174;434175;434176;434177;434178;434179;434180;434181;434182;434183;434184;434185;434186;434187;434188;434189 266666;266667;266668;266669;266670;266671;266672;266673;266674;266675;266676;266677;266678;266679;266680;266681;266682 266666 15 YGGVAVLK Unmodified 805.46979 0.46978929 1381 P31806 nnr Bifunctional NAD(P)H-hydrate repair enzyme Nnr;ADP-dependent (S)-NAD(P)H-hydrate dehydratase;NAD(P)H-hydrate epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 20.392 20.719 2 0.10075 8005 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 49.058 37.337 57240000 0 17439000 0 0 0 0 8102600 8628900 7936300 0 0 0 3104500 3766200 0 0 0 0 4980400 3282300 0 0 0 0 23358 1381 22633 434190;434191;434192;434193;434194;434195;434196;434197;434198;434199 266683;266684;266685 266684 3 YGIAVIEDAAHAVGTYYK Unmodified 1939.968 0.96797818 1927 P77690 arnB UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 46.994 45.411 3 0.0041546 18135 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 51.225 46.839 53963000 4883100 6542900 4505700 3193500 2704600 3576300 6426500 0 0 6613500 7742900 5173700 0 0 2600800 0 0 0 0 0 0 0 0 0 23359 1927 22634 434200;434201;434202;434203;434204;434205;434206;434207;434208;434209;434210 266686;266687 266686 2 YGIDQQETSLK Unmodified 1280.6248 0.62484596 1588 P46853 yhhX Uncharacterized oxidoreductase YhhX yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.248 21.595 2 1.1931E-10 8651 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 196.88 185.73 792880000 46152000 48344000 48027000 0 0 0 122150000 111700000 109220000 0 0 0 49740000 56854000 41810000 0 0 0 51487000 57292000 50103000 0 0 0 23360 1588 22635 434211;434212;434213;434214;434215;434216;434217;434218;434219;434220;434221;434222 266688;266689;266690;266691;266692;266693;266694;266695;266696;266697;266698;266699 266692 9 YGIEDYLEIK Unmodified 1241.618 0.61796967 1258 P25526 gabD Succinate-semialdehyde dehydrogenase [NADP(+)] GabD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 48.398 47.056 2 4.7492E-05 22798 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 137.13 107.98 733540000 145950000 126750000 134580000 0 0 0 85461000 76682000 71511000 0 0 0 22559000 18435000 18870000 0 0 0 0 0 32743000 0 0 0 23361 1258 22636 434223;434224;434225;434226;434227;434228;434229;434230;434231;434232 266700;266701;266702;266703;266704;266705;266706;266707;266708 266706 9 YGIEKPYEK Unmodified 1125.5706 0.57062555 638 P0AB89 purB Adenylosuccinate lyase yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 13.356 14.253 3 0.030593 4139 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 50.034 47.008 424960000 74041000 0 56382000 0 0 0 0 0 0 0 0 0 46979000 0 47057000 0 0 0 63961000 73072000 63469000 0 0 0 23362 638 22637 434233;434234;434235;434236;434237;434238;434239 266709;266710 266710 2 YGIIGPIYPQEMQPETLQK Unmodified 2204.1187 0.11874151 1318 P28629 adiA Biodegradative arginine decarboxylase yes yes 0 0 0 By MS/MS By MS/MS By matching 1 1 1 48.56 46.909 2 1.3075E-06 23144 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 117.27 108.93 23389000 0 0 0 0 0 0 8361100 7318200 7709900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23363 1318 22638 434240;434241;434242 266711;266712 266712 2 YGILGVEMEAAGIYGVAAEFGAK Unmodified 2315.1508 0.15076992 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 55.441 53.994 2;3 2.2318E-28 26922 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 245.19 241.02 1081600000 29749000 27024000 30276000 17301000 12421000 4363200 184280000 206040000 186010000 0 0 0 26943000 26235000 20538000 0 0 0 102400000 109640000 98364000 0 0 0 23364 669 22639 434243;434244;434245;434246;434247;434248;434249;434250;434251;434252;434253;434254;434255;434256;434257;434258;434259;434260;434261;434262;434263;434264;434265;434266;434267;434268;434269;434270;434271 266713;266714;266715;266716;266717;266718;266719;266720;266721;266722;266723 266714 11 YGIPQISTGDMLR Unmodified 1449.7286 0.72859953 1733 P69441 adk Adenylate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.434 40.731 2 5.405E-09 20190 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 169.65 163.87 8345500000 715990000 729990000 631160000 3641000 3547300 3889200 697150000 663890000 661320000 0 0 0 673780000 622920000 616320000 0 0 0 776140000 789430000 756350000 0 0 0 23365 1733 22640 434272;434273;434274;434275;434276;434277;434278;434279;434280;434281;434282;434283;434284;434285;434286 266724;266725;266726;266727;266728;266729;266730;266731;266732;266733;266734;266735;266736;266737;266738 266725 15 YGIPQISTGDMLR Oxidation (M) 1465.7235 0.72351415 1733 P69441 adk Adenylate kinase yes yes 0 1 0 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1 1 1 1 1 1 1 35.816 34.114 2 0.00061013 16304 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 79.974 71.87 114530000 9687400 17947000 7424500 0 0 0 0 18680000 0 2873400 2469900 2810200 8209400 7283800 7756900 0 0 0 7765900 10012000 11611000 0 0 0 23366 1733 22640 434287;434288;434289;434290;434291;434292;434293;434294;434295;434296;434297;434298;434299;434300 266739;266740;266741;266742;266743 266741 596 5 YGLCGFIR Unmodified 984.48512 0.48512178 1493 P37750 wbbJ Putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 35.854 34.161 2 0.003416 15784 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 92.319 87.464 59728000 0 1900900 0 0 0 0 4554300 7051000 5239800 0 0 0 5027000 4522500 4384900 0 0 0 7012300 7740700 8850200 1553400 1098000 793400 23367 1493 22641 434301;434302;434303;434304;434305;434306;434307;434308;434309;434310;434311;434312;434313 266744;266745;266746 266746 3 YGLEGVITDPHTGDR Unmodified 1628.7794 0.77944912 1887 P77213 ybdK Putative glutamate--cysteine ligase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 1 2 1 1 28.966 27.678 2;3 3.3602E-07 12800 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 129.84 115.15 291730000 55819000 55743000 52452000 0 0 0 27366000 29425000 28628000 0 0 0 5068500 9792400 8995100 0 0 0 10607000 7831800 0 0 0 0 23368 1887 22642 434314;434315;434316;434317;434318;434319;434320;434321;434322;434323;434324;434325;434326;434327;434328;434329;434330;434331 266747;266748;266749;266750;266751;266752 266748 6 YGLETANPVGPDGTYLPGTYPTLDGVNVFK Unmodified 3154.5499 0.54989669 58 P00956 ileS Isoleucine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.458 53.005 3 5.0769E-17 24981 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 152.99 150.93 504930000 63085000 70416000 54519000 0 0 0 39889000 36979000 29176000 0 0 0 43088000 36788000 36349000 0 0 0 55391000 0 39251000 0 0 0 23369 58 22643 434332;434333;434334;434335;434336;434337;434338;434339;434340;434341;434342 266753;266754;266755;266756;266757;266758 266758 6 YGLFSEVR Unmodified 969.49198 0.4919813 1919 P77581 astC Succinylornithine transaminase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 32.706 31.328 2 9.1831E-06 14619 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 179.16 159.27 978970000 347350000 312290000 301880000 1431000 1754500 1461500 0 0 0 0 0 0 0 0 0 0 0 0 3612900 3409300 5783000 0 0 0 23370 1919 22644 434343;434344;434345;434346;434347;434348;434349;434350;434351 266759;266760;266761 266761 3 YGLLNDVR Unmodified 948.50288 0.50288033 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.465 27.117 2 0.00065993 12545 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.57 112.41 145470000 9433500 9139600 9442800 1718200 1710900 1776300 5734600 11486000 6426200 8755500 7147000 6660700 5253600 0 6181800 1993600 0 1944900 12588000 13335000 11568000 4210700 4120700 4844600 23371 1488 22645 434352;434353;434354;434355;434356;434357;434358;434359;434360;434361;434362;434363;434364;434365;434366;434367;434368;434369;434370;434371;434372;434373 266762;266763;266764;266765;266766;266767;266768;266769;266770;266771;266772 266767 8 YGLLTNAELQIYKPWLDTDFIDELGGR Unmodified 3139.5866 0.58661655 235 P0A6E4 argG Argininosuccinate synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 55.255 53.772 3 1.1434E-22 26476 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 167.78 165.78 361070000 67490000 60777000 64269000 0 0 0 30005000 26623000 23259000 0 0 0 0 19326000 13294000 0 0 0 31639000 0 24385000 0 0 0 23372 235 22646 434374;434375;434376;434377;434378;434379;434380;434381;434382;434383 266773;266774;266775;266776 266776 4 YGLNIKPVILAADGSEPDLSQQALTEK Unmodified 2869.5073 0.50730359 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 47.207 45.706 3 9.7819E-23 22176 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 169.6 168.19 1986000000 166820000 161470000 137690000 0 2727800 2418200 143980000 147260000 137540000 0 3052300 2026600 161490000 152200000 161760000 0 0 0 202980000 198720000 196120000 2630900 2127800 3015400 23373 170 22647 434384;434385;434386;434387;434388;434389;434390;434391;434392;434393;434394;434395;434396;434397;434398;434399;434400;434401;434402 266777;266778;266779;266780;266781;266782;266783;266784;266785;266786;266787;266788;266789;266790 266787 14 YGLNSAAEMTPR Unmodified 1308.6132 0.61323542 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.821 24.755 2 4.0454E-23 7820 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 227.88 225.2 1331000000 40169000 45975000 40300000 0 0 0 132900000 120370000 122880000 50214000 46901000 40103000 80482000 79819000 76949000 12634000 10251000 15986000 128100000 121950000 122530000 13493000 14751000 14268000 23374 30 22648 434403;434404;434405;434406;434407;434408;434409;434410;434411;434412;434413;434414;434415;434416;434417;434418;434419;434420;434421;434422;434423 266791;266792;266793;266794;266795;266796;266797;266798;266799;266800;266801;266802;266803;266804;266805;266806;266807;266808;266809;266810 266793 19 YGLPAPVGYACTTPR Unmodified 1621.7923 0.79226242 392 P0A836 sucC Succinyl-CoA ligase [ADP-forming] subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 1 2 2 2 1 1 1 35.542 33.943 2;3 7.4688E-09 16295 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 103.11 102.87 3761900000 484540000 475140000 435370000 2617700 2588200 3271500 166790000 155620000 161090000 2233600 0 0 188060000 175140000 167470000 1136800 0 0 452130000 444180000 433350000 2554400 3663700 4987600 23375 392 22649 434424;434425;434426;434427;434428;434429;434430;434431;434432;434433;434434;434435;434436;434437;434438;434439;434440;434441;434442;434443;434444;434445;434446;434447;434448;434449;434450;434451;434452;434453;434454;434455 266811;266812;266813;266814;266815;266816;266817;266818;266819;266820;266821;266822;266823;266824;266825;266826;266827;266828;266829;266830;266831 266817 17 YGLSSNSGETLK Unmodified 1254.6092 0.6091959 1352 P30864 yafC Uncharacterized HTH-type transcriptional regulator YafC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 19.276 19.366 2 0.072589 6002 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 41.54 40.28 13364000 4458400 2441000 0 0 0 0 0 0 0 1957400 1604000 1810000 0 0 0 0 0 0 0 0 0 0 408760 685010 23376 1352 22650 434456;434457;434458;434459;434460;434461;434462 266832 266832 1 YGMAACAVDNLIDALQGK Unmodified 1908.9074 0.90736853 1485 P37666 ghrB Glyoxylate/hydroxypyruvate reductase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 2 1 2 2 1 2 54.946 53.486 2 3.0638E-22 26341 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 240.6 236.29 836930000 102580000 91782000 106270000 0 0 0 65399000 56199000 44500000 0 0 0 62629000 52782000 52119000 0 0 0 70427000 63940000 68295000 0 0 0 23377 1485 22651 434463;434464;434465;434466;434467;434468;434469;434470;434471;434472;434473;434474;434475;434476;434477;434478;434479 266833;266834;266835;266836;266837;266838;266839;266840;266841;266842;266843;266844 266841 12 YGPALASHAPQGK Unmodified 1295.6622 0.66223452 1107 P15254 purL Phosphoribosylformylglycinamidine synthase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 13.361 14.282 2 3.3053E-05 4377 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 125.75 121.13 116520000 54553000 46450000 0 0 1583900 1831800 0 2351000 1903800 0 0 0 2180400 0 2488800 0 0 0 3176500 0 0 0 0 0 23378 1107 22652 434480;434481;434482;434483;434484;434485;434486;434487;434488 266845 266845 1 YGQAIGHIGK Unmodified 1042.556 0.55597854 59 P00957 alaS Alanine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.162 13.877 2 9.3701E-05 4285 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 131.06 119.99 1026200000 88900000 75045000 73429000 2614500 1953300 1463900 101660000 111700000 81812000 2745700 1953600 3065700 79119000 66207000 60192000 0 0 0 81200000 79222000 110640000 1723700 1598900 0 23379 59 22653 434489;434490;434491;434492;434493;434494;434495;434496;434497;434498;434499;434500;434501;434502;434503;434504;434505;434506;434507;434508 266846;266847;266848;266849;266850;266851;266852;266853 266850 8 YGQHGSGSR Unmodified 947.42094 0.42094162 23 CON__Q86YZ3 yes no 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 8.7957 9.1442 2 0.00029459 1500 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 118.32 114.31 64311000 0 0 0 0 0 0 0 0 0 23019000 16793000 15375000 0 83051 0 0 0 0 0 0 0 4664100 4377100 0 + 23380 23 22654 434509;434510;434511;434512;434513;434514 266854;266855;266856 266854 3 YGQMQYR Unmodified 944.41744 0.41743614 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 13.399 14.248 2 0.0028253 4436 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 110.54 89.382 191670000 42931000 40138000 36865000 0 0 0 14635000 16076000 12609000 0 0 0 6363800 0 6202800 0 0 0 0 6990500 8861300 0 0 0 23381 1958 22655 434515;434516;434517;434518;434519;434520;434521;434522;434523;434524 266857;266858 266858 2 YGSDKPDLR Unmodified 1049.5142 0.5141733 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 11.609 12.448 2;3 6.1305E-22 3318 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 256.45 214.05 4409500000 242770000 195630000 178980000 644770 0 0 455890000 446420000 479070000 0 0 0 402190000 391470000 379140000 0 0 0 426070000 417690000 393580000 0 0 0 23382 1189 22656 434525;434526;434527;434528;434529;434530;434531;434532;434533;434534;434535;434536;434537;434538;434539;434540;434541;434542;434543;434544;434545;434546;434547;434548;434549 266859;266860;266861;266862;266863;266864;266865;266866;266867;266868;266869;266870;266871;266872;266873;266874;266875 266859 17 YGSGGLVQGK Unmodified 964.49779 0.49779495 897 P0AEY5 mdaB Modulator of drug activity B yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 13.353 14.175 2 0.00036762 4351 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 107.66 72.369 293730000 30420000 0 0 0 0 0 40164000 31178000 30357000 0 0 0 25516000 28912000 28053000 0 0 0 25887000 23956000 27508000 0 0 1776900 23383 897 22657 434550;434551;434552;434553;434554;434555;434556;434557;434558;434559;434560 266876 266876 1 YGTPPHAGLAFGLDR Unmodified 1570.7892 0.78922595 1189 P21889 aspS Aspartate--tRNA ligase yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1 1 1 2 2 2 2 2 2 1 30.968 29.555 2;3 5.0803E-20 13730 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 206.36 198.13 3412000000 188010000 158500000 191510000 935490 997970 0 286130000 255720000 274390000 1570000 0 0 301230000 275370000 339080000 0 0 0 350770000 415350000 370120000 0 2320900 0 23384 1189 22658 434561;434562;434563;434564;434565;434566;434567;434568;434569;434570;434571;434572;434573;434574;434575;434576;434577;434578;434579;434580;434581;434582;434583 266877;266878;266879;266880;266881;266882;266883;266884;266885;266886;266887;266888;266889;266890;266891 266884 15 YGTVPHSGFGLGFER Unmodified 1622.7841 0.78414057 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 3 2 2 2 2 31.822 30.49 2;3 2.1015E-07 14410 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 167.2 147.96 1772700000 225650000 221970000 200410000 0 0 0 109390000 112450000 108680000 0 0 0 88746000 109010000 80048000 0 0 0 161290000 190070000 164960000 0 0 0 23385 444 22659 434584;434585;434586;434587;434588;434589;434590;434591;434592;434593;434594;434595;434596;434597;434598;434599;434600;434601;434602;434603;434604;434605;434606;434607;434608 266892;266893;266894;266895;266896;266897;266898;266899;266900;266901;266902;266903;266904;266905;266906;266907;266908;266909;266910;266911;266912 266897 21 YGVIYAGAQK Unmodified 1068.5604 0.56039521 1211 P23721 serC Phosphoserine aminotransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.622 20.789 2 4.2728E-05 8355 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 139.28 134.52 1923500000 267830000 258460000 220950000 27131000 27547000 28595000 144470000 149020000 151620000 37237000 27576000 29145000 82286000 72996000 87221000 2125600 2257700 1685400 111000000 94977000 92757000 2108800 2408400 2053900 23386 1211 22660 434609;434610;434611;434612;434613;434614;434615;434616;434617;434618;434619;434620;434621;434622;434623;434624;434625;434626;434627;434628;434629;434630;434631;434632 266913;266914;266915;266916;266917;266918;266919;266920;266921;266922;266923;266924;266925;266926;266927;266928;266929;266930 266921 18 YGVSAER Unmodified 780.37662 0.37661719 1004 P0AGB3 rpoH RNA polymerase sigma factor RpoH yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 11.885 12.333 2 0.00084363 2701 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 143.37 87.341 198510000 0 2872800 0 0 0 0 5905600 5215000 7025800 0 2011600 0 4967500 0 0 57363000 61810000 51343000 0 0 0 0 0 0 23387 1004 22661 434633;434634;434635;434636;434637;434638;434639;434640;434641 266931;266932;266933 266932 3 YGVTDLR Unmodified 822.42357 0.42356738 183 P08312 pheS Phenylalanine--tRNA ligase alpha subunit yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 20.814 21.195 2 0.0021148 8359 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.01 105.58 1747900000 253490000 0 215890000 0 0 0 0 2488000 187450000 0 0 0 221510000 195670000 216470000 0 0 0 227840000 227100000 0 0 0 0 23388 183 22662 434642;434643;434644;434645;434646;434647;434648;434649;434650 266934;266935;266936;266937;266938 266935 5 YGVVEFDK Unmodified 955.4651 0.46509784 1489 P37744 rmlA1 Glucose-1-phosphate thymidylyltransferase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 25.944 24.825 2 0.0063856 11248 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 85.064 69.432 1577000000 98093000 94241000 86494000 0 0 0 136270000 135840000 108270000 0 0 0 127880000 124990000 117550000 0 0 0 186740000 181070000 179600000 0 0 0 23389 1489 22663 434651;434652;434653;434654;434655;434656;434657;434658;434659;434660;434661;434662;434663;434664;434665 266939;266940;266941;266942;266943;266944;266945;266946;266947;266948;266949;266950 266943 12 YGYAYPR Unmodified 888.413 0.41300269 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.945 18.399 2 0.025731 5425 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 71.359 55.92 147410000 7623800 11735000 8640100 1531500 1327300 1065100 10619000 6106900 9070200 5618200 6218700 4059900 6712900 9545200 9025100 1624500 0 0 14064000 12908000 11823000 2945700 2464900 2683100 23390 486 22664 434666;434667;434668;434669;434670;434671;434672;434673;434674;434675;434676;434677;434678;434679;434680;434681;434682;434683;434684;434685;434686;434687 266951;266952;266953 266951 3 YGYDISGPATNAQEAIQWTYFGYLAAVK Unmodified 3096.4869 0.4869025 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 55.506 54.028 2;3 5.2877E-108 25676 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 336.03 330.25 1646500000 68640000 59932000 60956000 0 5704500 0 216440000 217260000 200270000 8055800 5750600 9502700 147580000 159250000 124140000 0 0 0 120100000 121490000 121440000 0 0 0 23391 212 22665 434688;434689;434690;434691;434692;434693;434694;434695;434696;434697;434698;434699;434700;434701;434702;434703;434704;434705;434706;434707;434708;434709;434710;434711;434712;434713;434714;434715;434716 266954;266955;266956;266957;266958;266959;266960;266961;266962;266963;266964;266965;266966;266967;266968;266969;266970;266971;266972 266970 19 YHDADVTAFGYEYGQLPGCPAGFK Unmodified 2662.1798 0.17983822 903 P0AF12 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 43.928 42.413 2;3 1.1326E-49 21109 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 307.03 304.79 2001900000 152840000 126430000 135190000 0 0 0 246520000 200410000 205230000 0 0 0 139710000 128690000 117570000 0 0 0 189880000 168900000 190490000 0 0 0 23392 903 22666 434717;434718;434719;434720;434721;434722;434723;434724;434725;434726;434727;434728;434729;434730;434731;434732;434733;434734;434735;434736;434737;434738;434739;434740 266973;266974;266975;266976;266977;266978;266979;266980;266981;266982;266983;266984;266985;266986;266987;266988;266989;266990 266974 18 YHELPVSELWLVDVEGGKPK Unmodified 2294.1947 0.19468365 1138 P17411 chbF 6-phospho-beta-glucosidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 1 2 43.597 42.27 3;4 7.2157E-07 19931 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 94.384 91.816 45705000 0 0 0 0 0 0 0 0 0 0 0 0 20132000 6953300 18620000 0 0 0 0 0 0 0 0 0 23393 1138 22667 434741;434742;434743;434744;434745 266991;266992;266993 266991 3 YHFEQSSTTTQPAR Unmodified 1651.759 0.75904803 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 13.303 13.913 2;3 9.8122E-21 4192 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 224.82 220.52 3257100000 55124000 50847000 47581000 22813000 21078000 25863000 286830000 401450000 464390000 238010000 222010000 195420000 245530000 215460000 224580000 21624000 23738000 21021000 144600000 146330000 106250000 25195000 22561000 28833000 23394 664 22668 434746;434747;434748;434749;434750;434751;434752;434753;434754;434755;434756;434757;434758;434759;434760;434761;434762;434763;434764;434765;434766;434767;434768;434769;434770;434771;434772;434773;434774;434775;434776;434777;434778;434779;434780;434781;434782;434783;434784;434785;434786;434787;434788;434789;434790;434791;434792;434793 266994;266995;266996;266997;266998;266999;267000;267001;267002;267003;267004;267005;267006;267007;267008;267009;267010;267011;267012;267013;267014;267015;267016;267017;267018;267019;267020;267021;267022;267023;267024;267025;267026;267027 267010 33 YHGDMLLTTPVISTLK Unmodified 1787.9492 0.94915699 1271 P25742 rfaQ Lipopolysaccharide core heptosyltransferase RfaQ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 41.618 39.631 3 0.00014147 15819 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 69.331 69.052 55497000 0 0 0 0 0 0 3833300 2810100 6739500 4771800 4767100 4454400 6392300 4388300 4385400 0 0 0 5962600 6992000 0 0 0 0 23395 1271 22669 434794;434795;434796;434797;434798;434799;434800;434801;434802;434803;434804 267028;267029;267030;267031 267030 4 YHLNDPIMTQYFSYLK Unmodified 2031.9764 0.97643437 941 P0AFH2 oppB Oligopeptide transport system permease protein OppB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.187 47.776 3 2.9216E-10 17146 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 138.19 133.38 278440000 43257000 37558000 49075000 24824000 21482000 21460000 11429000 11060000 9587500 0 6123000 7026300 0 0 0 0 0 0 0 14476000 3218400 6066600 6312300 5488100 23396 941 22670 434805;434806;434807;434808;434809;434810;434811;434812;434813;434814;434815;434816;434817;434818;434819;434820 267032;267033;267034;267035;267036;267037;267038;267039;267040 267036 9 YHLPDAISFR Unmodified 1217.6193 0.61930707 1734 P69451 fadD Long-chain-fatty-acid--CoA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 2 1 2 2 1 2 2 33.546 32.133 2;3 0.00020941 15731 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 83.783 70.691 146400000 18817000 20239000 28265000 0 0 0 6176800 6046800 10890000 0 0 0 8153700 9924100 7501600 0 0 0 4720600 12583000 13086000 0 0 0 23397 1734 22671 434821;434822;434823;434824;434825;434826;434827;434828;434829;434830;434831;434832;434833;434834;434835;434836;434837;434838;434839;434840 267041;267042;267043;267044;267045;267046;267047;267048;267049;267050;267051;267052;267053 267041 12 YHNPEFTMLEWYR Unmodified 1784.7981 0.79807608 450 P0A8N7 epmA Elongation factor P--(R)-beta-lysine ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 43.838 42.264 3 0.088565 20632 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 26.532 26.456 41277000 3391800 0 0 0 0 0 4165700 2890200 5024500 0 0 0 0 4315300 3926200 0 0 0 6813600 6917500 3832600 0 0 0 23398 450 22672 434841;434842;434843;434844;434845;434846;434847;434848;434849 267054 267054 0 YHPHGDSAVYDTIVR Unmodified 1728.822 0.82198264 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 19.287 19.635 2;3 4.9054E-07 7624 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 158.05 155.73 2353300000 180270000 166070000 129540000 5340500 4565300 6629600 129380000 147660000 152870000 39911000 31349000 32167000 172090000 176820000 165250000 11760000 8744200 6877100 245800000 247170000 253600000 13284000 13526000 12589000 23399 882 22673 434850;434851;434852;434853;434854;434855;434856;434857;434858;434859;434860;434861;434862;434863;434864;434865;434866;434867;434868;434869;434870;434871;434872;434873;434874;434875;434876;434877;434878;434879;434880;434881;434882;434883;434884;434885;434886;434887;434888;434889 267055;267056;267057;267058;267059;267060;267061;267062;267063;267064;267065;267066;267067;267068;267069;267070;267071;267072;267073;267074;267075;267076;267077;267078;267079;267080;267081;267082;267083;267084;267085;267086 267064 31 YHPLWDEGYLSVGDTHTTR Unmodified 2246.0392 0.039245638 1144 P17854 cysH Phosphoadenosine phosphosulfate reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1 2 1 1 1 2 2 2 2 2 2 1 34.827 33.254 2;3 1.4014E-29 15807 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 210.57 209.22 1067500000 113850000 101690000 82485000 0 1734400 2202900 88879000 78791000 100100000 5455300 4949200 6690000 68270000 67277000 57299000 0 0 0 99564000 90266000 94860000 3123800 0 0 23400 1144 22674 434890;434891;434892;434893;434894;434895;434896;434897;434898;434899;434900;434901;434902;434903;434904;434905;434906;434907;434908;434909;434910;434911;434912;434913;434914;434915;434916;434917 267087;267088;267089;267090;267091;267092;267093;267094;267095;267096;267097;267098;267099;267100;267101 267093 15 YHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHR Unmodified 4209.9434 0.94340024 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 1 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 2 51.841 50.628 4;5 2.985E-29 24924 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 169.94 169.91 632200000 6348600 0 2884500 3450400 4919100 3663300 84449000 86909000 76400000 67752000 61256000 42089000 31269000 28588000 41590000 7095800 6012900 8100300 0 27679000 5973600 11231000 8623800 15917000 23401 700 22675 434918;434919;434920;434921;434922;434923;434924;434925;434926;434927;434928;434929;434930;434931;434932;434933;434934;434935;434936;434937;434938;434939;434940;434941;434942;434943;434944;434945;434946;434947;434948;434949;434950 267102;267103;267104;267105;267106;267107;267108;267109;267110;267111;267112;267113;267114;267115;267116;267117 267111 16 YHQLTLTTGYDGSYR Unmodified 1773.8322 0.83221298 1611 P54901 csiE Stationary phase-inducible protein CsiE yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 26.408 25.276 3 0.023752 11604 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 30.739 28.336 37724000 0 0 0 0 0 358970 0 11432000 10609000 0 0 0 0 5880500 3526300 0 0 0 0 5916900 0 0 0 0 23402 1611 22676 434951;434952;434953;434954;434955;434956 267118;267119;267120 267119 0 YHSETEMMR Oxidation (M) 1198.4747 0.47469303 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 10.629 11.445 2 0.0059973 2657 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.072 62.914 122610000 5869000 6213400 7711200 0 0 0 16923000 12945000 12713000 0 0 0 9265600 8340000 8328100 0 0 0 11641000 10555000 12101000 0 0 0 23403 1409 22677 434957;434958;434959;434960;434961;434962;434963;434964;434965;434966;434967;434968 267121;267122;267123 267122 544;545 3 YHSETEMMR Unmodified 1182.4798 0.4797784 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 12.18 12.808 2;3 8.737E-08 3386 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 186.09 168.7 1799000000 137430000 118050000 124620000 9254000 8570000 9471500 129560000 134940000 124900000 13798000 9975500 13532000 120970000 118360000 168540000 5585900 3940800 3983400 165390000 181940000 168330000 10265000 9977500 7580900 23404 1409 22677 434969;434970;434971;434972;434973;434974;434975;434976;434977;434978;434979;434980;434981;434982;434983;434984;434985;434986;434987;434988;434989;434990;434991;434992;434993;434994;434995;434996;434997;434998;434999;435000;435001;435002;435003;435004;435005;435006;435007;435008;435009;435010;435011;435012;435013;435014;435015 267124;267125;267126;267127;267128;267129;267130;267131;267132;267133;267134;267135;267136;267137;267138;267139;267140;267141;267142 267140 15 YHSIIIMTDADVDGSHIR Unmodified 2041.9891 0.98912432 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 2 2 2 2 1 2 1 1 2 2 1 2 1 2 2 2 30.713 29.239 3;4 6.6054E-30 13675 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 221.78 218.63 836250000 59057000 53659000 32527000 6337300 5739800 7598100 44967000 70661000 80066000 28988000 31658000 30962000 35760000 67614000 23793000 4831600 7220100 11382000 58209000 85403000 41234000 16420000 16193000 15966000 23405 883 22678 435016;435017;435018;435019;435020;435021;435022;435023;435024;435025;435026;435027;435028;435029;435030;435031;435032;435033;435034;435035;435036;435037;435038;435039;435040;435041;435042;435043;435044;435045;435046;435047;435048;435049;435050;435051;435052;435053;435054;435055;435056 267143;267144;267145;267146;267147;267148;267149;267150;267151;267152;267153;267154;267155;267156;267157;267158;267159;267160;267161;267162;267163;267164;267165;267166;267167;267168;267169;267170 267160 28 YHSLVVEPDSLPACFDVTAWSETR Unmodified 2778.2959 0.29593061 47 P00903 pabA Aminodeoxychorismate synthase component 2 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 51.071 49.883 3 1.2566E-06 23382 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 98.121 72.489 117530000 16970000 14358000 8770800 0 0 0 0 0 0 0 0 0 0 14867000 20152000 0 0 0 0 22188000 20228000 0 0 0 23406 47 22679 435057;435058;435059;435060;435061;435062;435063 267171;267172;267173;267174;267175 267174 5 YHTQLLGQMPLHISLR Unmodified 1906.0247 0.024721968 902 P0AF08 mrp Protein mrp yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 2 2 2 2 3 3 3 1 1 1 3 3 3 3 3 3 1 1 38.022 36.261 2;3;4 8.3447E-09 16650 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 125.98 124.36 2498000000 239830000 233370000 118210000 3192000 2320500 2553700 184610000 247840000 216800000 2419200 2773600 2611100 183020000 181980000 209030000 0 0 0 215890000 222850000 225930000 1413000 1321600 0 23407 902 22680 435064;435065;435066;435067;435068;435069;435070;435071;435072;435073;435074;435075;435076;435077;435078;435079;435080;435081;435082;435083;435084;435085;435086;435087;435088;435089;435090;435091;435092;435093;435094;435095;435096;435097;435098;435099;435100;435101;435102;435103;435104;435105;435106;435107;435108;435109 267176;267177;267178;267179;267180;267181;267182;267183;267184;267185;267186;267187;267188;267189;267190;267191;267192;267193;267194;267195;267196;267197;267198;267199;267200;267201;267202 267202 23 YHVNFMGGDLGK Unmodified 1336.6234 0.62340617 857 P0AEG4 dsbA Thiol:disulfide interchange protein DsbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 2 2 2 1 1 2 2 2 28.383 27.18 2;3 2.0938E-08 12359 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 169.37 142.99 4599700000 385430000 346850000 317330000 611200 0 0 349100000 361530000 363390000 0 592360 0 326470000 309460000 309720000 475820 0 590340 507980000 549710000 470490000 0 0 0 23408 857 22681 435110;435111;435112;435113;435114;435115;435116;435117;435118;435119;435120;435121;435122;435123;435124;435125;435126;435127;435128;435129;435130;435131;435132;435133;435134;435135;435136;435137 267203;267204;267205;267206;267207;267208;267209;267210;267211;267212;267213;267214;267215;267216;267217;267218;267219;267220 267216 18 YHVNQYTGDESR Unmodified 1467.6379 0.63787026 1627 P60664 hisF Imidazole glycerol phosphate synthase subunit HisF yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.202 13.015 2 3.1877E-08 3751 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 163.64 159.34 76379000 10100000 7586900 7023600 0 0 0 6440800 6162400 7788100 0 0 0 6262200 0 6493000 0 0 0 5685500 6244100 6592100 0 0 0 23409 1627 22682 435138;435139;435140;435141;435142;435143;435144;435145;435146;435147;435148 267221;267222;267223 267223 3 YHVSNYQPSPMVR Unmodified 1576.7456 0.74564657 803 P0ADS6 yggE Uncharacterized protein YggE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 19.276 19.798 2;3 9.5617E-24 7557 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 272.58 260.37 1245000000 102850000 88099000 79660000 1662700 1758300 1565100 65229000 111750000 130100000 0 0 0 99927000 108250000 103240000 0 0 0 121290000 114210000 115460000 0 0 0 23410 803 22683 435149;435150;435151;435152;435153;435154;435155;435156;435157;435158;435159;435160;435161;435162;435163;435164;435165;435166;435167;435168;435169;435170;435171;435172;435173;435174;435175 267224;267225;267226;267227;267228;267229;267230;267231;267232;267233;267234;267235;267236;267237;267238;267239;267240;267241;267242;267243;267244;267245;267246;267247 267237 24 YHYALLR Unmodified 934.50249 0.5024864 1781 P75829 ybjX Uncharacterized protein YbjX yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 19.227 19.602 2 0.029168 6098 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 67.889 55.336 75618000 0 1975200 2263800 0 0 0 6074200 5615200 7578500 0 4118400 3834500 5481300 2832500 3853500 0 0 0 6646900 9340000 7773800 2535100 2594200 3101300 23411 1781 22684 435176;435177;435178;435179;435180;435181;435182;435183;435184;435185;435186;435187;435188;435189;435190;435191;435192 267248;267249 267248 1 YHYTSAQILPHDSYLINLGHPVTEALEK Unmodified 3208.6193 0.61931366 229 P0A6C1 nfo Endonuclease 4 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 40.328 38.915 4;5 1.4641E-05 19480 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 72.913 72.374 332000000 23974000 13806000 23223000 0 0 0 41773000 57711000 41511000 0 0 0 10474000 11717000 14441000 1954400 3964300 4726900 19114000 20181000 43433000 0 0 0 23412 229 22685 435193;435194;435195;435196;435197;435198;435199;435200;435201;435202;435203;435204;435205;435206;435207;435208;435209;435210 267250;267251;267252;267253 267251 4 YHYYATPVELVPLLEEK Unmodified 2063.0615 0.061544209 1454 P37005 lasT Uncharacterized tRNA/rRNA methyltransferase LasT yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 49.266 47.901 3 0.00010046 23878 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 71.781 68.542 110000000 6967100 8845300 8031000 0 0 0 11372000 10077000 11759000 0 0 0 8905000 9915400 7994100 0 0 0 12107000 6630900 7397400 0 0 0 23413 1454 22686 435211;435212;435213;435214;435215;435216;435217;435218;435219;435220;435221;435222 267254 267254 1 YIAETFLEDAR Unmodified 1326.6456 0.6455814 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 3 2 2 1 1 1 1 1 1 1 2 1 1 1 39.924 38.018 2;3 4.1921E-08 17646 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 177.36 148.27 4220600000 107540000 88496000 89395000 0 1336500 0 783700000 716290000 675180000 2319200 2001700 2101400 122010000 116250000 127720000 0 0 0 482630000 458010000 442760000 0 1485700 1337700 23414 669 22687 435223;435224;435225;435226;435227;435228;435229;435230;435231;435232;435233;435234;435235;435236;435237;435238;435239;435240;435241;435242;435243;435244;435245 267255;267256;267257;267258;267259;267260;267261;267262;267263;267264;267265;267266;267267 267267 12 YIAETFLEDAREVNNVR Unmodified 2038.012 0.011968255 669 P0ABP8 deoD Purine nucleoside phosphorylase DeoD-type yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 41.458 39.764 3 4.4808E-11 19681 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 150.59 148.67 223130000 0 6215600 4326100 0 0 0 40786000 36454000 26782000 0 0 0 10083000 13265000 9465500 0 0 0 27300000 26174000 22276000 0 0 0 23415 669 22688 435246;435247;435248;435249;435250;435251;435252;435253;435254;435255;435256 267268;267269;267270;267271;267272 267270 5 YIAGVGAEYTDAPALQR Unmodified 1793.8948 0.89481323 1367 P31441 ade Adenine deaminase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 35.158 33.629 2 5.5838E-09 16067 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 160.15 92.082 72298000 0 0 0 0 0 0 9737100 8070600 9020100 0 0 0 6805700 6758000 6372600 0 0 0 9912300 8488200 7133800 0 0 0 23416 1367 22689 435257;435258;435259;435260;435261;435262;435263;435264;435265 267273 267273 1 YIALAYDK Unmodified 955.50148 0.50148335 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 25.842 24.47 2 0.013568 8960 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 73.26 41.971 67713000 0 0 0 1238400 1160300 0 5780100 0 0 9428000 9107600 5085100 0 0 0 0 0 0 8317400 7437900 0 6469700 7649700 6038300 23417 1488 22690 435266;435267;435268;435269;435270;435271;435272;435273;435274;435275;435276 267274;267275;267276;267277;267278;267279 267275 6 YIALHNIR Unmodified 998.56615 0.56614929 98 P04968 ilvA L-threonine dehydratase biosynthetic IlvA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching 1 1 1 1 16.792 17.316 2 0.0087017 6108 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 92.191 81.122 12448000 4553300 3656400 3335900 0 0 0 0 0 0 0 0 0 0 0 0 901870 0 0 0 0 0 0 0 0 23418 98 22691 435277;435278;435279;435280 267280;267281 267281 0 YIASLADELR Unmodified 1149.603 0.60298831 1973 Q47147 yafJ Putative glutamine amidotransferase YafJ yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 35.35 33.81 2 0.14257 16561 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 40.724 23.484 64332000 13325000 11215000 10462000 0 0 0 6186000 8395800 0 0 0 0 4657000 2869800 0 0 0 0 3725700 3495500 0 0 0 0 23419 1973 22692 435281;435282;435283;435284;435285;435286;435287;435288;435289 267282;267283 267282 0 YICENQDSISSK Unmodified 1442.6348 0.63475872 9 CON__P02768-1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 15.598 15.653 2 0.00052491 4364 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 83.862 37.86 9043500 0 0 0 0 0 0 0 0 0 2734100 3328100 2981300 0 0 0 0 0 0 0 0 0 0 0 0 + 23420 9 22693 435290;435291;435292 267284;267285;267286 267284 3 YICGEETALINSLEGR Unmodified 1823.8724 0.87236323 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.541 45.101 2 1.4131E-13 21952 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 207.88 203.36 501520000 24600000 27650000 20666000 9390900 10282000 12133000 31536000 30013000 26294000 17563000 15090000 15951000 24771000 27443000 21437000 0 5294300 5748000 43221000 45281000 47464000 11514000 14862000 13310000 23421 1383 22694 435293;435294;435295;435296;435297;435298;435299;435300;435301;435302;435303;435304;435305;435306;435307;435308;435309;435310;435311;435312;435313;435314;435315 267287;267288;267289;267290;267291;267292;267293;267294;267295;267296;267297;267298 267298 12 YIDFSVIQSLR Unmodified 1339.7136 0.71360139 1353 P30870 glnE Glutamate-ammonia-ligase adenylyltransferase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.606 49.224 2 0.0013313 23227 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 81.95 77.796 95151000 14918000 11239000 10109000 0 0 0 10567000 7215700 6714500 0 0 0 5734200 4664700 4666500 0 0 0 6110600 7031200 6181800 0 0 0 23422 1353 22695 435316;435317;435318;435319;435320;435321;435322;435323;435324;435325;435326;435327 267299;267300;267301;267302;267303;267304;267305;267306 267304 0 YIDIPELVANVK Unmodified 1372.7602 0.76021723 56 P00946 manA Mannose-6-phosphate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 50.645 49.281 2;3 3.3612E-05 24520 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 101.39 93.669 1096400000 66598000 69984000 65305000 0 0 0 126060000 130850000 131230000 0 0 0 90818000 76810000 88260000 0 0 0 85407000 85957000 79144000 0 0 0 23423 56 22696 435328;435329;435330;435331;435332;435333;435334;435335;435336;435337;435338;435339;435340;435341;435342;435343;435344;435345;435346;435347;435348;435349;435350;435351 267307;267308;267309;267310;267311;267312;267313;267314;267315;267316;267317;267318;267319;267320;267321;267322;267323 267308 14 YIDMLIPR Unmodified 1019.5474 0.54738768 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 39.992 38.318 2 0.00083171 19000 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 121.29 91.954 800030000 91044000 87392000 78766000 0 0 0 67265000 62959000 71853000 0 0 0 55543000 45273000 48917000 0 0 0 60442000 69371000 61210000 0 0 0 23424 148 22697 435352;435353;435354;435355;435356;435357;435358;435359;435360;435361;435362;435363 267324;267325;267326;267327;267328;267329 267324 3 YIDMLIPRGGAGLHK Unmodified 1639.8868 0.8868315 148 P07004 proA Gamma-glutamyl phosphate reductase yes yes 0 0 1 By matching By MS/MS By matching By MS/MS 1 1 1 1 17.808 18.299 4 0.16826 6872 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 10.944 4.2579 159260000 0 38059000 0 0 0 0 0 53485000 0 0 0 12551000 0 0 0 0 0 0 0 55166000 0 0 0 0 23425 148 22698 435364;435365;435366;435367 267330;267331 267330 2 YIDQFVQPK Unmodified 1136.5866 0.58660996 1879 P76621 csiD Protein CsiD yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 26.49 25.448 2 0.00048604 11394 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 109.01 87.052 251220000 59546000 50980000 51640000 0 0 0 23214000 20650000 25153000 0 0 0 4105000 3940200 3314300 0 0 0 0 0 8682600 0 0 0 23426 1879 22699 435368;435369;435370;435371;435372;435373;435374;435375;435376;435377 267332;267333;267334;267335 267335 4 YIDVDDLLHR Unmodified 1257.6354 0.63535107 1468 P37349 dhaM PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM;Phosphocarrier protein HPr;Phosphotransferase enzyme IIA component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 39.154 37.468 2;3 4.7114E-07 17506 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 175.38 170.76 2307200000 81205000 63200000 69673000 1890100 2092700 1848400 240100000 228260000 256630000 16432000 21795000 17434000 208600000 185400000 184790000 7481000 5693600 8324900 230090000 241050000 221360000 5759300 3677600 4398900 23427 1468 22700 435378;435379;435380;435381;435382;435383;435384;435385;435386;435387;435388;435389;435390;435391;435392;435393;435394;435395;435396;435397;435398;435399;435400;435401;435402;435403;435404;435405;435406;435407;435408;435409;435410;435411;435412;435413;435414;435415;435416;435417 267336;267337;267338;267339;267340;267341;267342;267343;267344;267345;267346;267347;267348;267349;267350;267351;267352;267353;267354;267355;267356;267357;267358;267359;267360;267361;267362;267363;267364;267365;267366;267367;267368;267369;267370 267366 35 YIELPDAYK Unmodified 1110.5597 0.55972651 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.626 31.227 2 0.00055816 14953 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.27 119.27 4604200000 218560000 229500000 209600000 2178300 1693900 2136200 362030000 396260000 350170000 4105900 4550800 4051100 366650000 364390000 389240000 2436900 1838200 1415500 571300000 563600000 548860000 3027100 3386800 3196600 23428 337 22701 435418;435419;435420;435421;435422;435423;435424;435425;435426;435427;435428;435429;435430;435431;435432;435433;435434;435435;435436;435437;435438;435439;435440;435441 267371;267372;267373;267374;267375;267376;267377;267378;267379;267380;267381;267382;267383 267373 12 YIEQGLSK Unmodified 936.49165 0.49164694 1094 P14175 proV Glycine betaine/L-proline transport ATP-binding protein ProV yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.526 15.1 2 0.0019749 3633 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 104.37 51.729 405310000 21701000 22566000 21981000 11150000 11366000 12707000 30266000 30439000 30111000 15117000 13237000 13131000 21894000 20033000 17943000 3913700 3619400 4246700 46410000 0 53476000 0 0 0 23429 1094 22702 435442;435443;435444;435445;435446;435447;435448;435449;435450;435451;435452;435453;435454;435455;435456;435457;435458;435459;435460;435461;435462 267384;267385;267386;267387;267388;267389 267387 6 YIEVHNPLSTTEAQFEGQEIVPITLTK Unmodified 3056.5706 0.57063213 617 P0AAX8 ybiS Probable L,D-transpeptidase YbiS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.659 49.324 3 6.5844E-31 24274 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 185.17 185 1373300000 108170000 100730000 84991000 2514100 2253600 2301800 121850000 106180000 99860000 0 0 0 128070000 123120000 114380000 0 0 0 129810000 122920000 126200000 0 0 0 23430 617 22703 435463;435464;435465;435466;435467;435468;435469;435470;435471;435472;435473;435474;435475;435476;435477 267390;267391;267392;267393;267394;267395;267396;267397;267398;267399;267400;267401 267392 12 YIFELNPDHVLVK Unmodified 1585.8504 0.85042922 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 2 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 1 1 41.989 40.281 2;3 6.4117E-07 19724 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 164.33 160.29 3751800000 345610000 344470000 341050000 3319700 3629000 5054700 292830000 314860000 295440000 3081300 3531400 4038900 294710000 233630000 266800000 3873300 1430500 0 319590000 341560000 326130000 2704300 2445500 2048000 23431 295 22704 435478;435479;435480;435481;435482;435483;435484;435485;435486;435487;435488;435489;435490;435491;435492;435493;435494;435495;435496;435497;435498;435499;435500;435501;435502;435503;435504;435505;435506;435507;435508;435509;435510;435511;435512;435513 267402;267403;267404;267405;267406;267407;267408;267409;267410;267411;267412;267413;267414;267415;267416;267417;267418;267419;267420;267421;267422;267423;267424;267425;267426;267427;267428 267418 27 YIFPNGCLPSVR Unmodified 1421.7126 0.71255553 522 P0A9H7 cfa Cyclopropane-fatty-acyl-phospholipid synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 41.444 39.081 2 7.8939E-05 15886 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 100.02 88.303 16221000 0 0 0 806330 0 0 0 0 0 5487500 4734400 5193100 0 0 0 0 0 0 0 0 0 0 0 0 23432 522 22705 435514;435515;435516;435517 267429;267430;267431 267429 3 YIFTVHALDIER Unmodified 1475.7773 0.77726428 1080 P12994 ybhB UPF0098 protein YbhB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 39.378 37.938 3 0.0006377 18405 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 65.563 64.123 57243000 20006000 20302000 16934000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23433 1080 22706 435518;435519;435520 267432;267433;267434 267433 3 YIGAHVSAAGGLANAAIR Unmodified 1710.9166 0.91655173 229 P0A6C1 nfo Endonuclease 4 yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.229 25.486 3 0.027608 10972 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 42.314 40.133 82067000 12379000 6237700 0 0 0 0 0 0 0 0 0 0 7494300 5725800 4124600 5598100 4773100 4878600 8755300 10294000 10246000 0 0 1560300 23434 229 22707 435521;435522;435523;435524;435525;435526;435527;435528;435529;435530;435531;435532 267435;267436;267437 267437 0 YIGASSMHASQFAQALELQK Unmodified 2179.0732 0.073188303 1934 P77735 yajO Uncharacterized oxidoreductase YajO yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 1 2 2 2 2 1 1 1 1 1 37.669 35.966 2;3 2.6412E-23 17292 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 251.28 218 668120000 135950000 114410000 111040000 1458700 1940200 2482600 56586000 66410000 57120000 0 0 0 23262000 14047000 16205000 0 0 0 19003000 26279000 21924000 0 0 0 23435 1934 22708 435533;435534;435535;435536;435537;435538;435539;435540;435541;435542;435543;435544;435545;435546;435547;435548;435549;435550;435551;435552;435553;435554 267438;267439;267440;267441;267442;267443;267444;267445;267446;267447;267448;267449;267450 267447 13 YIGAYTALMDGR Unmodified 1329.6387 0.63872189 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.132 36.353 2 6.4636E-14 17466 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 160.36 149.5 3824300000 238490000 217580000 211260000 243910 1809000 1937000 391550000 415290000 407920000 0 0 1977000 424140000 371540000 409920000 0 0 0 366960000 358280000 0 1898700 2313400 1185900 23436 224 22709 435555;435556;435557;435558;435559;435560;435561;435562;435563;435564;435565;435566;435567;435568;435569;435570;435571;435572;435573 267451;267452;267453;267454;267455;267456;267457;267458;267459;267460;267461;267462 267456 12 YIGAYTALMDGR Oxidation (M) 1345.6336 0.63363651 224 P0A6A3 ackA Acetate kinase yes yes 0 1 0 By matching By MS/MS By matching 1 1 1 31.092 29.777 2 0.022116 14280 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 57.785 48.602 20101000 7649200 0 0 0 0 0 0 0 7845100 0 0 0 0 0 4606300 0 0 0 0 0 0 0 0 0 23437 224 22709 435574;435575;435576 267463 267463 85 1 YIGPEVPK Unmodified 901.49092 0.49091866 1086 P13029 katG Catalase-peroxidase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 20.666 21.08 2 0.077871 8546 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 53.891 41.534 463070000 53217000 50981000 40496000 0 0 0 54664000 58594000 58805000 0 0 0 29609000 22074000 19804000 0 0 0 27010000 27124000 20697000 0 0 0 23438 1086 22710 435577;435578;435579;435580;435581;435582;435583;435584;435585;435586;435587;435588 267464;267465;267466 267465 3 YIGPEVPKEDLIWQDPLPQPIYNPTEQDIIDLK Unmodified 3875.9873 0.98732322 1086 P13029 katG Catalase-peroxidase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 54.516 53.068 3 2.2977E-13 26285 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 115.52 111.71 912000000 121800000 97742000 110900000 0 0 0 90968000 88313000 64490000 0 0 0 65864000 57150000 57666000 0 0 0 52538000 54753000 49821000 0 0 0 23439 1086 22711 435589;435590;435591;435592;435593;435594;435595;435596;435597;435598;435599;435600 267467;267468;267469;267470;267471;267472;267473;267474;267475;267476 267468 10 YIGSLVADFHR Unmodified 1276.6564 0.65642086 499 P0A993 fbp Fructose-1,6-bisphosphatase class 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 2 2 2 1 2 2 32.242 30.87 2;3 1.4936E-14 13925 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 218.48 206.43 2898100000 132340000 173030000 148240000 5175200 4460600 3414100 239960000 239760000 228480000 6070000 6291200 5017500 229530000 243520000 251730000 4320200 2834700 2869300 323440000 340550000 290410000 4823900 6357600 5495800 23440 499 22712 435601;435602;435603;435604;435605;435606;435607;435608;435609;435610;435611;435612;435613;435614;435615;435616;435617;435618;435619;435620;435621;435622;435623;435624;435625;435626;435627;435628;435629;435630;435631;435632;435633;435634;435635;435636;435637;435638;435639;435640;435641 267477;267478;267479;267480;267481;267482;267483;267484;267485;267486;267487;267488;267489;267490;267491;267492;267493;267494;267495;267496;267497;267498;267499;267500;267501;267502;267503;267504;267505;267506;267507;267508 267508 31 YIGVGER Unmodified 792.413 0.41300269 1052 P10121 ftsY Signal recognition particle receptor FtsY yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 15.3 15.893 2 0.0022218 4418 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 116.11 90.288 63235000 4419000 3621100 0 0 3480800 3692000 0 3111800 0 15600000 10510000 14901000 0 0 0 0 0 0 2452800 0 1447200 0 0 0 23441 1052 22713 435642;435643;435644;435645;435646;435647;435648;435649;435650;435651;435652 267509;267510;267511;267512;267513;267514 267510 6 YIGVSNETAFGVMR Unmodified 1542.7501 0.75006325 556 P0A9T4 tas Protein tas yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 38.797 37.124 2 1.3502E-19 18299 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 211.79 201.84 359580000 30434000 27759000 24677000 0 0 0 35851000 32730000 32725000 0 0 0 30742000 26324000 28642000 0 0 0 30325000 31419000 27954000 0 0 0 23442 556 22714 435653;435654;435655;435656;435657;435658;435659;435660;435661;435662;435663;435664 267515;267516;267517;267518;267519;267520;267521;267522;267523;267524;267525;267526;267527;267528;267529 267518 15 YIIDELDQICQR Unmodified 1564.7555 0.75554256 1653 P62768 yaeH UPF0325 protein YaeH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 1 1 2 2 2 1 2 2 44.445 42.839 2;3 6.801E-31 21288 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 261.98 260.57 2247900000 222130000 246400000 237340000 11241000 9952300 12231000 243590000 231670000 231100000 7880100 15920000 15493000 134230000 119460000 127890000 2976800 0 3344200 106370000 99907000 90391000 23305000 24405000 30698000 23443 1653 22715 435665;435666;435667;435668;435669;435670;435671;435672;435673;435674;435675;435676;435677;435678;435679;435680;435681;435682;435683;435684;435685;435686;435687;435688;435689;435690;435691;435692;435693;435694;435695;435696;435697;435698;435699;435700;435701;435702;435703;435704;435705 267530;267531;267532;267533;267534;267535;267536;267537;267538;267539;267540;267541;267542;267543;267544;267545;267546;267547;267548;267549;267550;267551;267552 267536 22 YIIPELK Unmodified 874.51641 0.51640513 1230 P23909 mutS DNA mismatch repair protein MutS yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.983 33.409 2 0.007515 15995 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 90.986 81.972 225410000 17875000 18111000 14118000 0 712570 662550 19506000 18547000 18503000 0 0 2010100 13589000 15329000 14765000 0 0 0 22907000 24334000 23274000 1164900 0 0 23444 1230 22716 435706;435707;435708;435709;435710;435711;435712;435713;435714;435715;435716;435717;435718;435719;435720;435721 267553;267554;267555;267556;267557;267558 267553 6 YIISLAEGLDNVHFLGYLDKEK Unmodified 2536.3213 0.32134072 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 1 By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.613 50.483 4 4.5023E-07 20581 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 106.03 105.64 128770000 0 0 0 3743500 2907700 1857400 4366800 5268600 4460300 10786000 11344000 13946000 5132800 0 4718400 4304400 6307500 6622700 6502800 0 6581000 10222000 8119400 11574000 23445 1494 22717 435722;435723;435724;435725;435726;435727;435728;435729;435730;435731;435732;435733;435734;435735;435736;435737;435738;435739;435740 267559;267560;267561;267562;267563;267564;267565;267566;267567 267561 9 YILETVKPQR Unmodified 1245.7081 0.70812208 93 P04816 livK Leucine-specific-binding protein yes yes 0 0 1 By matching By MS/MS By matching 1 1 1 19.086 19.684 2 0.1605 7437 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 53.968 38.817 11072000 3798300 3769000 3504300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23446 93 22718 435741;435742;435743 267568 267568 0 YILTPVLWK Unmodified 1131.6692 0.66921738 850 P0AED9 dcm DNA-cytosine methyltransferase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.876 47.463 2 0.0050505 23047 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 75.854 70.546 38240000 0 3854000 3076200 0 0 0 4101700 4194700 2530800 2142800 1873800 1225600 2306800 2594400 2600600 0 0 0 4282200 0 3456700 0 0 0 23447 850 22719 435744;435745;435746;435747;435748;435749;435750;435751;435752;435753;435754;435755;435756;435757 267569;267570;267571;267572 267569 4 YIMMHAPTER Unmodified 1247.5791 0.57909852 1632 P60757 hisG ATP phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 2 2 1 1 1 1 1 2 2 18.65 19.196 2;3 0.00041714 7120 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.44 102.63 253310000 42579000 14707000 12386000 723400 0 0 22499000 22994000 17321000 0 0 0 12445000 11830000 10672000 0 0 0 20676000 31589000 32885000 0 0 0 23448 1632 22720 435758;435759;435760;435761;435762;435763;435764;435765;435766;435767;435768;435769;435770;435771;435772;435773;435774;435775 267573;267574;267575;267576;267577;267578;267579;267580;267581;267582 267579 8 YINELQANPAK Unmodified 1259.651 0.65100113 1423 P33570 tktB Transketolase 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.63 20.12 2 1.2961E-05 8027 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 169.12 144.97 1502000000 275530000 244570000 241980000 0 0 0 188580000 178820000 161340000 0 0 0 33641000 29564000 32319000 0 0 0 33472000 43493000 38728000 0 0 0 23449 1423 22721 435776;435777;435778;435779;435780;435781;435782;435783;435784;435785;435786;435787 267583;267584;267585;267586;267587;267588;267589;267590;267591;267592;267593;267594 267583 10 YINIGVAVDTPNGLVVPVFK Unmodified 2114.1776 0.17757702 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 4 54.588 53.326 2;3;4 2.2259E-23 19407 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 187.56 164.92 7789300000 153000000 131790000 105490000 1170700000 1282500000 1120500000 69391000 93787000 82186000 63211000 61621000 51832000 84421000 77256000 73929000 71433000 54623000 57491000 139830000 131360000 121700000 784720000 911760000 894760000 23450 133 22722 435788;435789;435790;435791;435792;435793;435794;435795;435796;435797;435798;435799;435800;435801;435802;435803;435804;435805;435806;435807;435808;435809;435810;435811;435812;435813;435814;435815;435816;435817;435818;435819;435820;435821;435822;435823;435824;435825;435826;435827;435828;435829;435830;435831;435832;435833;435834;435835;435836;435837;435838;435839;435840;435841 267595;267596;267597;267598;267599;267600;267601;267602;267603;267604;267605;267606;267607;267608;267609;267610;267611;267612;267613;267614;267615;267616;267617;267618;267619;267620;267621;267622;267623;267624;267625;267626;267627;267628;267629;267630;267631;267632 267625 38 YINIGVAVDTPNGLVVPVFKDVNK Unmodified 2570.4108 0.41082443 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 1 By MS/MS By matching 1 1 51.805 50.528 4 0.12444 18300 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 25.213 24.207 5322100 0 0 0 2832500 2489600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23451 133 22723 435842;435843 267633 267633 1 YINIGVAVDTPNGLVVPVFKDVNKK Unmodified 2698.5058 0.50578745 133 P06959 aceF Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 1 2 3 3 2 47.711 46.03 3;4;5 1.3616E-10 16438 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 129.78 127.2 1476000000 0 0 0 340270000 354610000 306020000 0 0 0 10006000 7351500 8845500 0 0 0 0 0 0 0 0 0 152620000 155810000 140480000 23452 133 22724 435844;435845;435846;435847;435848;435849;435850;435851;435852;435853;435854;435855;435856;435857;435858;435859;435860;435861;435862;435863;435864;435865 267634;267635;267636;267637;267638;267639;267640;267641;267642;267643;267644;267645;267646;267647;267648;267649;267650;267651 267644 18 YIPEELR Unmodified 918.48108 0.48108226 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS 1 22.179 22.228 2 0.15291 9145 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 49.59 8.2876 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23453 696 22725 435866 267652 267652 1 YIPEELRK Unmodified 1046.576 0.57604528 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.854 15.67 2 0.0092896 5199 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 83.377 62.678 432340000 91779000 79006000 78747000 1174900 0 0 0 15636000 8881900 0 0 0 17358000 20549000 19404000 0 0 0 30346000 36686000 32772000 0 0 0 23454 696 22726 435867;435868;435869;435870;435871;435872;435873;435874;435875;435876;435877;435878 267653;267654;267655;267656;267657;267658 267655 6 YIPQAIAQGVAAIIAEAK Unmodified 1826.0302 0.030184502 1192 P22188 murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 55.338 53.987 3 0.004973 25807 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 37.969 36.172 320110000 31058000 26235000 26462000 0 0 0 23500000 23766000 21773000 0 0 0 26395000 24291000 23704000 0 0 2831700 34342000 25563000 30188000 0 0 0 23455 1192 22727 435879;435880;435881;435882;435883;435884;435885;435886;435887;435888;435889;435890;435891 267659;267660;267661;267662 267660 4 YIQDQHPEVK Unmodified 1255.6197 0.619701 1350 P30860 artJ ABC transporter arginine-binding protein 1 yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 11.855 12.699 2;3 0.00040551 3544 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 111.17 104.72 244740000 45248000 42356000 45276000 0 0 0 0 14273000 12243000 0 0 0 13365000 7663400 11418000 0 0 0 16985000 20068000 15843000 0 0 0 23456 1350 22728 435892;435893;435894;435895;435896;435897;435898;435899;435900;435901;435902;435903;435904;435905;435906;435907;435908;435909;435910;435911;435912;435913 267663;267664 267664 2 YIQGADVINR Unmodified 1147.5986 0.59857163 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.811 21.707 2 4.002E-05 9144 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 140.5 122.1 1336400000 56927000 47195000 33643000 0 0 875430 253860000 228590000 246170000 3048500 2603400 1625400 98185000 90868000 84227000 0 0 0 65808000 62320000 60486000 0 0 0 23457 554 22729 435914;435915;435916;435917;435918;435919;435920;435921;435922;435923;435924;435925;435926;435927;435928;435929 267665;267666;267667;267668;267669;267670;267671;267672;267673;267674;267675;267676;267677;267678 267667 13 YIQTVWGLGYVFVPDGSKA Unmodified 2099.0728 0.072777598 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 1 By MS/MS By matching By MS/MS 1 1 1 54.786 54.841 2 0.00012305 21439 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 80.3 74.816 34818000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14251000 9963200 10604000 0 0 0 0 0 0 23458 570 22730 435930;435931;435932 267679;267680 267679 2 YISESGICSR Unmodified 1170.5339 0.53392246 1397 P32684 rluF Ribosomal large subunit pseudouridine synthase F yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.846 17.406 2 0.0037453 6314 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 78.516 75.022 44906000 4339000 5075900 4412000 0 0 0 4717800 5627200 5186500 805620 0 0 2706100 3151800 1986400 453340 310840 0 3449100 0 2684300 0 0 0 23459 1397 22731 435933;435934;435935;435936;435937;435938;435939;435940;435941;435942;435943;435944;435945;435946 267681 267681 0 YISMNVTQKPFDNPK Unmodified 1780.8818 0.8818057 1774 P75797 gsiB Glutathione-binding protein GsiB yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 26.895 25.748 3 1.0663E-08 11689 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.33 132.09 552260000 68352000 62302000 54626000 0 0 0 38215000 38589000 40952000 0 0 0 40247000 36808000 39672000 0 0 0 45213000 44836000 42450000 0 0 0 23460 1774 22732 435947;435948;435949;435950;435951;435952;435953;435954;435955;435956;435957;435958 267682;267683;267684;267685;267686;267687;267688;267689;267690;267691;267692;267693 267686 12 YISNHSSGK Unmodified 991.47231 0.47230849 670 P0ABQ0 coaBC Coenzyme A biosynthesis bifunctional protein CoaBC;Phosphopantothenoylcysteine decarboxylase;Phosphopantothenate--cysteine ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 4.7445 5.6365 2 0.00087833 1058 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 98.904 84.128 123430000 0 0 0 0 0 0 23774000 0 21220000 0 0 0 14433000 10841000 15322000 0 0 0 12391000 14338000 11111000 0 0 0 23461 670 22733 435959;435960;435961;435962;435963;435964;435965;435966 267694;267695;267696;267697;267698;267699;267700 267696 7 YITIENNDALAQLAGHTR Unmodified 1999.0123 0.012302606 513 P0A9E5 fnr Fumarate and nitrate reduction regulatory protein yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.9 36.284 3 8.7236E-14 17397 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 138.55 135.26 835190000 82766000 78527000 71862000 3303400 2961600 2869000 47085000 48511000 53957000 8627000 6713700 6611000 38134000 33078000 32355000 27016000 21821000 25720000 82883000 72947000 71946000 5205200 5470700 4824800 23462 513 22734 435967;435968;435969;435970;435971;435972;435973;435974;435975;435976;435977;435978;435979;435980;435981;435982;435983;435984;435985;435986;435987;435988;435989;435990 267701;267702;267703;267704;267705;267706;267707;267708;267709;267710;267711;267712;267713;267714;267715;267716 267716 16 YIVALDQGTTSSR Unmodified 1409.7151 0.71505795 239 P0A6F3 glpK Glycerol kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 2 2 1 1 1 2 2 2 1 2 2 1 27.715 26.408 2 1.1135E-23 12076 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 226.9 223.65 8553200000 182010000 168150000 151850000 0 1685500 2326400 911240000 944790000 991130000 7017600 3633400 3152300 914950000 852420000 870330000 0 0 0 814050000 862120000 869030000 0 0 3308400 23463 239 22735 435991;435992;435993;435994;435995;435996;435997;435998;435999;436000;436001;436002;436003;436004;436005;436006;436007;436008;436009;436010;436011;436012;436013;436014;436015 267717;267718;267719;267720;267721;267722;267723;267724;267725;267726;267727;267728;267729;267730;267731;267732;267733;267734;267735;267736;267737;267738;267739;267740;267741 267719 18 YIVALTGGIGSGK Unmodified 1234.6921 0.69213767 250 P0A6I9 coaE Dephospho-CoA kinase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 34.531 33.168 2 0.022778 15742 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 69.01 48.109 17103000 0 0 0 0 0 0 0 0 0 0 0 0 2649000 2497600 0 0 0 0 3940000 4280900 3735400 0 0 0 23464 250 22736 436016;436017;436018;436019;436020 267742;267743;267744;267745 267744 0 YIVDGAAVAEMK Unmodified 1265.6326 0.63257388 1715 P67826 cutC Copper homeostasis protein CutC yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 31.621 30.269 2 0.08729 14502 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 42.001 37.094 92332000 9969900 7824700 8037000 0 0 0 8717400 11393000 12287000 0 0 0 7904300 10430000 7156400 0 0 0 0 0 8612200 0 0 0 23465 1715 22737 436021;436022;436023;436024;436025;436026;436027;436028;436029;436030 267746 267746 0 YIVEVVNHNLNVSSTAEGLYTSQPGISK Unmodified 3018.5298 0.52982995 515 P0A9F3 cysB HTH-type transcriptional regulator CysB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.455 39.904 3 2.0663E-23 14890 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 177.12 173.29 216500000 21097000 17108000 13760000 1315600 1010700 1659700 8278700 6965900 0 0 4680000 3950700 5001800 0 0 51383000 33649000 33658000 0 6629600 0 1668500 2374800 2308200 23466 515 22738 436031;436032;436033;436034;436035;436036;436037;436038;436039;436040;436041;436042;436043;436044;436045;436046;436047;436048 267747;267748;267749;267750;267751;267752;267753 267747 7 YIVNEVQDVYR Unmodified 1396.6987 0.69867961 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 1 2 1 3 3 3 3 3 3 3 3 3 4 7 6 3 3 3 5 4 4 33.012 31.721 1;2;3 1.3817E-26 11718 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 303.08 287.93 25354000000 458850000 417910000 391700000 25467000 25027000 22871000 339350000 372480000 377250000 2938200000 2852200000 2989800000 341060000 323630000 308740000 128840000 173650000 173870000 529080000 531090000 529420000 3902900000 3686400000 3514500000 23467 458 22739 436049;436050;436051;436052;436053;436054;436055;436056;436057;436058;436059;436060;436061;436062;436063;436064;436065;436066;436067;436068;436069;436070;436071;436072;436073;436074;436075;436076;436077;436078;436079;436080;436081;436082;436083;436084;436085;436086;436087;436088;436089;436090;436091;436092;436093;436094;436095;436096;436097;436098;436099;436100;436101;436102;436103;436104;436105;436106;436107;436108;436109;436110;436111;436112;436113;436114;436115;436116;436117;436118;436119;436120;436121;436122;436123;436124;436125;436126;436127 267754;267755;267756;267757;267758;267759;267760;267761;267762;267763;267764;267765;267766;267767;267768;267769;267770;267771;267772;267773;267774;267775;267776;267777;267778;267779;267780;267781;267782;267783;267784;267785;267786;267787;267788;267789;267790;267791;267792;267793;267794;267795;267796;267797;267798;267799;267800;267801;267802;267803;267804 267790 45 YIVTWDMLQIHAR Unmodified 1644.8446 0.84463234 538 P0A9M5 gpt Xanthine phosphoribosyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 1 2 2 45.953 44.43 2;3 6.575E-07 21994 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 134.13 129.83 1830300000 140940000 125730000 114220000 0 0 0 142140000 140770000 129440000 0 0 0 153040000 146100000 150060000 0 0 0 153530000 210870000 223440000 0 0 0 23468 538 22740 436128;436129;436130;436131;436132;436133;436134;436135;436136;436137;436138;436139;436140;436141;436142;436143;436144 267805;267806;267807;267808;267809;267810;267811;267812;267813;267814;267815;267816;267817;267818;267819;267820 267808 15 YIWDYVNDLVEFNR Unmodified 1844.8733 0.87334951 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.486 54.012 2;3 1.3895E-14 25665 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 238.01 226.8 945200000 36465000 43772000 35083000 0 0 0 61276000 59882000 57525000 0 0 0 103010000 81740000 79958000 0 0 0 130550000 132920000 123020000 0 0 0 23469 1491 22741 436145;436146;436147;436148;436149;436150;436151;436152;436153;436154;436155;436156;436157;436158;436159;436160;436161;436162;436163;436164;436165;436166;436167;436168 267821;267822;267823;267824;267825;267826;267827;267828;267829;267830;267831;267832;267833;267834;267835 267833 11 YKAEYVVILAGDHIYK Unmodified 1881.0036 0.0036354 283 P0A6V1 glgC Glucose-1-phosphate adenylyltransferase yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 34.079 32.746 3 0.0072569 15913 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 38.824 37.982 154620000 12712000 9330300 8743500 0 0 0 20859000 26511000 21179000 0 0 0 8566900 9418700 8982900 0 1828900 0 10264000 9851100 6376800 0 0 0 23470 283 22742 436169;436170;436171;436172;436173;436174;436175;436176;436177;436178;436179;436180;436181 267836 267836 1 YKDLGSFDYGR Unmodified 1319.6146 0.61461563 75 P02932 phoE Outer membrane pore protein E yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 23.786 22.95 2;3 0.00014529 8060 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 91.313 88.892 221750000 0 0 0 0 0 0 0 4269700 0 34931000 28720000 31226000 7510000 3107500 5004500 10779000 6681200 8250000 8667200 7031100 9493500 23371000 17886000 14819000 23471 75 22743 436182;436183;436184;436185;436186;436187;436188;436189;436190;436191;436192;436193;436194;436195;436196;436197;436198;436199;436200;436201;436202;436203 267837;267838;267839;267840;267841;267842;267843;267844;267845 267842 9 YKDLIGK Unmodified 835.48035 0.48035398 158 P07118 valS Valine--tRNA ligase yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 12.941 13.746 2 0.012715 4178 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 91.626 64.31 376930000 25656000 0 0 0 0 0 30135000 33998000 42677000 0 0 841860 35644000 33762000 31802000 0 0 0 47987000 48613000 45813000 0 0 0 23472 158 22744 436204;436205;436206;436207;436208;436209;436210;436211;436212;436213;436214 267846;267847;267848;267849;267850 267846 5 YKDSGSDMVLVGLLR Unmodified 1651.8603 0.86034198 537 P0A9M2 hpt Hypoxanthine phosphoribosyltransferase yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 1 1 1 2 2 2 1 2 2 43.267 41.713 2;3 8.2831E-09 19572 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 110.44 101.74 502510000 41652000 43535000 33536000 631500 1021100 0 36560000 32874000 32590000 718150 0 865870 35383000 43509000 41568000 0 0 0 43689000 58531000 55849000 0 0 0 23473 537 22745 436215;436216;436217;436218;436219;436220;436221;436222;436223;436224;436225;436226;436227;436228;436229;436230;436231;436232;436233;436234;436235;436236;436237;436238;436239 267851;267852;267853;267854;267855;267856;267857;267858;267859;267860;267861;267862;267863 267860 13 YKETESSAVR Unmodified 1168.5724 0.57241646 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By MS/MS 1 11.057 10.969 2 0.0010891 2187 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 98.033 88.445 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23474 222 22746 436240 267864 267864 1 YKETESSAVREELAK Unmodified 1738.8737 0.87374344 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 2 2 14.269 14.36 2;3;4 1.4599E-14 3662 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 192.15 175.77 131400000 0 0 0 1681500 0 0 0 0 0 6835900 4451400 5697800 0 0 0 28793000 50807000 33131000 0 0 0 0 0 0 23475 222 22747 436241;436242;436243;436244;436245;436246;436247;436248;436249;436250;436251 267865;267866;267867;267868;267869;267870;267871;267872 267866 8 YKFDTIADNENLNISSK Unmodified 1970.9585 0.9585357 1267 P25714 yidC Membrane protein insertase YidC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 1 2 2 1 2 2 2 2 1 1 2 2 2 1 2 2 32.264 30.877 2;3 1.2131E-14 13970 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 211.13 193.92 567460000 17724000 21717000 25128000 2717700 0 0 31408000 28386000 23645000 13841000 12369000 10137000 51467000 42485000 41750000 8736100 5769900 6587500 58275000 69698000 64717000 9787400 10345000 10764000 23476 1267 22748 436252;436253;436254;436255;436256;436257;436258;436259;436260;436261;436262;436263;436264;436265;436266;436267;436268;436269;436270;436271;436272;436273;436274;436275;436276;436277;436278;436279;436280;436281;436282;436283;436284;436285;436286;436287 267873;267874;267875;267876;267877;267878;267879;267880;267881;267882;267883;267884;267885;267886;267887;267888;267889;267890;267891;267892 267891 20 YKFTDVNGETK Unmodified 1300.6299 0.62993134 729 P0ACG1 stpA DNA-binding protein StpA yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 15.86 16.094 2 1.2154E-05 4147 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 150.35 147.42 96711000 0 0 0 0 0 243140 0 0 0 0 0 0 0 0 0 62676000 15189000 16144000 0 0 0 741970 735880 980590 23477 729 22749 436288;436289;436290;436291;436292;436293;436294 267893;267894;267895 267894 3 YKGLGEMNPEQLWETTMDPESR Unmodified 2610.173 0.17303828 883 P0AES6 gyrB DNA gyrase subunit B yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 49.959 48.895 3 1.4506E-10 19626 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 102.6 102.13 94201000 0 0 0 2885900 2170300 2216500 0 0 0 19078000 16456000 12084000 0 0 0 5722100 5163600 5562600 0 0 0 7802500 8042400 7017200 23478 883 22750 436295;436296;436297;436298;436299;436300;436301;436302;436303;436304;436305;436306 267896;267897;267898;267899;267900 267897 5 YKQCHGR Unmodified 947.43957 0.43956857 1057 P10408 secA Protein translocase subunit SecA yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 8.9938 9.1278 2 0.0064439 1507 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 106.76 101.91 69085000 0 0 0 0 0 0 0 0 0 11906000 10187000 8509900 0 0 0 6470500 6694800 2649200 0 0 0 5549000 10289000 6829500 23479 1057 22751 436307;436308;436309;436310;436311;436312;436313;436314;436315 267901;267902;267903;267904 267901 4 YKQEQTPLAVIAGK Unmodified 1544.8562 0.85624288 1254 P25516 acnA Aconitate hydratase A yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 26.553 25.472 2;3 4.5992E-20 11420 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 223.07 216.09 1262100000 325510000 314680000 262140000 0 624810 594060 71074000 67373000 65592000 0 0 0 18148000 16381000 16973000 0 0 0 34221000 35002000 33785000 0 0 0 23480 1254 22752 436316;436317;436318;436319;436320;436321;436322;436323;436324;436325;436326;436327;436328;436329;436330;436331;436332;436333;436334;436335;436336;436337;436338;436339;436340;436341 267905;267906;267907;267908;267909;267910;267911;267912;267913;267914;267915;267916;267917;267918;267919 267916 14 YKSDTGPLDPECDCYTCR Unmodified 2235.8871 0.88710337 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 22.475 22.463 3 7.3569E-14 6795 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 142.35 142.35 44413000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15137000 15262000 14014000 0 0 0 0 0 0 23481 395 22753 436342;436343;436344 267920;267921;267922;267923;267924 267924 5 YKSEEPDAE Unmodified 1066.4455 0.44548461 705 P0AC69 grxD Glutaredoxin-4 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.222 11.934 2 0.00028303 3029 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 129.72 129.72 1700500000 180800000 171770000 180380000 7238100 7000900 7052700 113310000 106250000 117410000 4966300 0 0 156230000 134770000 166500000 0 0 2626600 119630000 115630000 91478000 5793800 5110900 6540800 23482 705 22754 436345;436346;436347;436348;436349;436350;436351;436352;436353;436354;436355;436356;436357;436358;436359;436360;436361;436362;436363;436364 267925;267926;267927;267928;267929;267930;267931;267932;267933;267934;267935;267936;267937;267938;267939 267930 15 YKVPLDEYPKR Unmodified 1406.7558 0.75580056 129 P06720 melA Alpha-galactosidase yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 17.699 18.118 4 0.15085 4953 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 23.226 20.592 14609000 0 0 3686600 2563600 1794700 2597400 0 0 0 0 1766300 0 0 0 0 0 960600 1240100 0 0 0 0 0 0 23483 129 22755 436365;436366;436367;436368;436369;436370;436371 267940 267940 1 YLAAQYGQK Unmodified 1040.5291 0.52909508 713 P0ACA7 gstB Glutathione S-transferase GstB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.909 15.568 2 4.1631E-05 5151 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 151.17 135.73 692620000 99422000 95816000 96327000 0 0 0 64086000 52505000 57608000 0 0 0 41807000 34501000 29012000 6518500 1901600 0 39217000 39904000 33994000 0 0 0 23484 713 22756 436372;436373;436374;436375;436376;436377;436378;436379;436380;436381;436382;436383;436384;436385 267941;267942;267943;267944;267945;267946;267947;267948;267949;267950;267951;267952 267946 12 YLADAPQQDPEGNK Unmodified 1544.7107 0.71070086 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.514 17.059 2 6.5417E-20 5718 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 219.03 217.44 732400000 44535000 44961000 45191000 0 776620 0 51505000 54435000 52146000 0 3540900 4239700 72928000 58342000 50987000 6595800 4415100 3604400 67419000 80775000 72950000 4786600 3962100 4305800 23485 124 22757 436386;436387;436388;436389;436390;436391;436392;436393;436394;436395;436396;436397;436398;436399;436400;436401;436402;436403;436404;436405;436406 267953;267954;267955;267956;267957;267958;267959;267960;267961;267962;267963;267964;267965;267966;267967;267968;267969;267970;267971 267970 19 YLADIYQLAR Unmodified 1224.6503 0.65027285 1430 P33644 yfiH Laccase domain protein YfiH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.063 39.397 2 0.00024595 19263 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.04 108.12 136240000 14796000 13802000 12087000 0 0 0 15319000 12142000 13409000 0 0 0 8678200 7374800 5919200 0 0 0 10866000 11220000 10629000 0 0 0 23486 1430 22758 436407;436408;436409;436410;436411;436412;436413;436414;436415;436416;436417;436418 267972;267973;267974;267975;267976;267977;267978 267973 3 YLAEEHFK Unmodified 1035.5025 0.50254598 444 P0A8M0 asnS Asparagine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.29 15.083 2 0.00053026 4921 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 134.06 108.12 781980000 97196000 80248000 99662000 459940 0 407960 49777000 42990000 41238000 0 0 0 43905000 42743000 42126000 0 0 0 73693000 87144000 80389000 0 0 0 23487 444 22759 436419;436420;436421;436422;436423;436424;436425;436426;436427;436428;436429;436430;436431;436432 267979;267980;267981;267982;267983;267984;267985;267986;267987;267988;267989;267990 267981 12 YLAEQAMDR Unmodified 1095.5019 0.50189405 139 P06987 hisB Histidine biosynthesis bifunctional protein HisB;Histidinol-phosphatase;Imidazoleglycerol-phosphate dehydratase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.639 19.09 2 0.00014884 7311 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 131.03 119.96 245900000 22635000 25401000 22763000 2558200 2493000 2647300 19991000 18740000 21014000 3868000 3240300 4119800 18070000 16627000 16247000 0 0 0 12572000 15464000 15720000 0 0 1730900 23488 139 22760 436433;436434;436435;436436;436437;436438;436439;436440;436441;436442;436443;436444;436445;436446;436447;436448;436449;436450;436451 267991;267992;267993;267994;267995;267996;267997 267992 6 YLAESIR Unmodified 850.45487 0.45486751 408 P0A887 ubiE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.952 18.37 2 0.0016502 5546 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 126.24 59.25 741260000 26197000 0 0 15999000 12253000 11798000 78845000 81143000 77013000 14311000 13346000 15032000 42798000 47763000 54442000 0 1075700 1727400 83895000 69903000 68513000 8625100 8620100 7957500 23489 408 22761 436452;436453;436454;436455;436456;436457;436458;436459;436460;436461;436462;436463;436464;436465;436466;436467;436468;436469;436470;436471;436472 267998;267999;268000;268001;268002;268003 267999 6 YLAGDIDITESFPK Unmodified 1567.777 0.77698951 1900 P77348 mppA Periplasmic murein peptide-binding protein yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.292 43.858 2 4.8958E-07 21574 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.45 113.75 126210000 5565800 7805500 7414000 0 0 0 14979000 15394000 12699000 0 0 0 10207000 8151100 6942600 0 0 0 9995200 15371000 11688000 0 0 0 23490 1900 22762 436473;436474;436475;436476;436477;436478;436479;436480;436481;436482;436483;436484 268004;268005;268006;268007;268008;268009;268010;268011;268012 268006 8 YLAHNGEINTITGNR Unmodified 1671.8329 0.83288168 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 18.802 19.298 2;3 4.6525E-30 7220 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 196.02 173.94 419620000 81922000 57359000 65308000 1295000 0 0 32416000 37327000 34204000 1100000 0 816140 18710000 14992000 16942000 0 0 0 20797000 20457000 15979000 0 0 0 23491 218 22763 436485;436486;436487;436488;436489;436490;436491;436492;436493;436494;436495;436496;436497;436498;436499;436500;436501;436502;436503;436504;436505;436506;436507;436508;436509;436510;436511 268013;268014;268015;268016;268017;268018;268019;268020;268021;268022;268023;268024;268025;268026;268027 268023 13 YLAIADELFGADWADAR Unmodified 1895.9054 0.90537792 257 P0A6L0 deoC Deoxyribose-phosphate aldolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 55.213 53.739 2;3 4.6286E-24 26457 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 256.96 248.22 2686800000 102730000 104120000 86256000 0 0 0 363010000 363330000 289080000 0 0 0 274920000 244920000 240260000 0 0 0 201320000 210550000 206280000 0 0 0 23492 257 22764 436512;436513;436514;436515;436516;436517;436518;436519;436520;436521;436522;436523;436524;436525;436526;436527;436528;436529;436530;436531;436532;436533;436534;436535 268028;268029;268030;268031;268032;268033;268034;268035;268036;268037;268038;268039;268040;268041;268042;268043;268044;268045 268035 18 YLAIANYEDR Unmodified 1226.5932 0.5931519 1067;1156 P11349;P19318 narH;narY Respiratory nitrate reductase 1 beta chain;Respiratory nitrate reductase 2 beta chain no no 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.337 27.959 2 2.0876E-06 12860 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.91 113.52 983630000 0 27181000 27348000 4143300 3403800 3529600 88982000 75214000 83160000 13910000 12755000 11442000 62613000 57895000 61127000 0 2887700 1722600 97858000 106120000 89267000 48040000 50456000 54577000 23493 1067;1156 22765 436536;436537;436538;436539;436540;436541;436542;436543;436544;436545;436546;436547;436548;436549;436550;436551;436552;436553;436554;436555;436556;436557;436558 268046;268047;268048;268049;268050;268051;268052;268053;268054;268055;268056 268054 11 YLAIANYEDRFVVPSSHR Unmodified 2136.0752 0.075237214 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 2 2 2 35.438 33.348 3;4 5.2441E-07 12748 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 104.61 96.109 157200000 0 0 0 1574200 3622400 2233100 0 0 0 8632900 4958900 4584000 0 0 0 0 0 0 0 0 0 41592000 44644000 45358000 23494 1067 22766 436559;436560;436561;436562;436563;436564;436565;436566;436567;436568;436569;436570;436571;436572 268057;268058;268059;268060;268061;268062;268063 268060 7 YLAIGCSCVSPNDQR Unmodified 1738.7767 0.77668871 1534 P39384 yjiM Uncharacterized protein YjiM yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 27.603 26.375 2 1.2764E-20 12310 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 220.94 215.44 104380000 0 0 0 0 0 0 21257000 22038000 20104000 0 0 0 7048900 9179000 7723000 0 0 0 6564600 6054300 4407500 0 0 0 23495 1534 22767 436573;436574;436575;436576;436577;436578;436579;436580;436581 268064;268065;268066;268067 268065 4 YLATKPEGAAAR Unmodified 1246.667 0.66698555 1241 P24202 mrr Mrr restriction system protein yes yes 0 0 1 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.667 12.489 2 0.00038711 3385 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 87.913 51.22 180130000 13914000 11190000 10483000 0 0 0 26105000 0 25480000 0 0 0 15262000 18113000 0 0 0 0 23717000 17987000 17878000 0 0 0 23496 1241 22768 436582;436583;436584;436585;436586;436587;436588;436589;436590;436591 268068;268069 268068 1 YLCNTSSR Unmodified 999.44438 0.44437918 891 P0AEW6 gsk Inosine-guanosine kinase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.281 12.113 2 0.13852 3160 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 50.703 47.311 140120000 11705000 6603100 6718600 0 0 0 8009700 11470000 6721300 0 0 0 12736000 11055000 10107000 0 0 0 19957000 15639000 19398000 0 0 0 23497 891 22769 436592;436593;436594;436595;436596;436597;436598;436599;436600;436601;436602;436603 268070;268071 268070 0 YLDEHGIVVEK Unmodified 1300.6663 0.66631685 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 1 2 2 2 1 1 20.623 21.049 2;3 1.1121E-05 7973 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 146.11 122.08 564390000 8553400 9488300 8323500 0 0 0 120620000 111430000 95408000 0 0 0 72415000 66128000 64101000 0 0 0 4575700 3345900 0 0 0 0 23498 520 22770 436604;436605;436606;436607;436608;436609;436610;436611;436612;436613;436614;436615;436616;436617;436618;436619;436620;436621;436622 268072;268073;268074;268075;268076;268077;268078;268079;268080;268081 268078 9 YLDGLADAK Unmodified 964.48656 0.48656157 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 24.604 23.599 2 0.0026544 10634 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 84.368 58.918 872910000 105160000 99628000 90339000 1130100 0 0 65253000 58996000 50141000 0 0 0 57049000 51857000 48712000 0 0 0 81587000 81797000 81267000 0 0 0 23499 543 22771 436623;436624;436625;436626;436627;436628;436629;436630;436631;436632;436633;436634;436635 268082;268083;268084;268085;268086;268087;268088;268089;268090;268091 268083 10 YLDGLTAER Unmodified 1036.5189 0.51892433 17 CON__P35908 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 25.742 24.327 2 0.00082579 8487 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 93.429 72.128 83610000 0 0 0 13580000 13325000 13372000 0 0 0 6742700 4713400 0 0 0 0 0 0 0 0 0 0 0 31877000 0 + 23500 17 22772 436636;436637;436638;436639;436640;436641;436642 268092;268093 268093 2 YLDGVTVR Unmodified 921.49198 0.4919813 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 2 2 2 1 2 1 22.461 22.119 2 7.465E-05 9463 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 138.33 98.571 2306500000 183140000 182520000 157130000 0 0 0 330570000 337390000 290190000 0 0 0 207880000 176590000 172770000 0 0 0 0 21711000 246590000 0 0 0 23501 170 22773 436643;436644;436645;436646;436647;436648;436649;436650;436651;436652;436653;436654;436655;436656;436657;436658;436659;436660;436661 268094;268095;268096;268097;268098;268099;268100;268101;268102;268103;268104 268097 11 YLDIQIVLK Unmodified 1103.659 0.65904662 921 P0AF96 tabA Toxin-antitoxin biofilm protein TabA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 5 3 3 1 1 1 1 1 1 1 1 1 1 1 1 47.311 45.941 1;2 0.00089562 22691 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.458 89.244 651370000 256390000 148250000 137470000 12346000 14465000 11927000 13221000 10426000 10402000 0 0 0 6557200 5386700 4432200 0 0 0 7621300 5914100 6550000 0 0 0 23502 921 22774 436662;436663;436664;436665;436666;436667;436668;436669;436670;436671;436672;436673;436674;436675;436676;436677;436678;436679;436680;436681;436682;436683;436684 268105;268106;268107;268108;268109;268110;268111;268112;268113;268114;268115;268116;268117;268118;268119;268120;268121;268122;268123;268124;268125;268126;268127;268128;268129;268130 268114 24 YLDLIANDK Unmodified 1063.555 0.55497548 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.865 30.417 2 0.00015747 14332 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 130.28 121.52 2747200000 207360000 199960000 197620000 717530 0 0 426520000 401350000 429520000 2577000 0 0 142150000 142920000 145330000 0 0 0 147940000 158280000 144940000 0 0 0 23503 449 22775 436685;436686;436687;436688;436689;436690;436691;436692;436693;436694;436695;436696;436697;436698 268131;268132;268133;268134 268131 3 YLDLISNDESR Unmodified 1323.6307 0.63065962 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 33.195 31.755 2 1.5444E-19 14441 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 226.59 226.59 3819300000 295450000 274770000 244130000 0 0 0 295530000 282900000 294640000 0 0 0 314070000 314630000 296810000 0 0 0 402540000 419280000 384570000 0 0 0 23504 448 22776 436699;436700;436701;436702;436703;436704;436705;436706;436707;436708;436709;436710 268135;268136;268137;268138;268139;268140;268141;268142;268143;268144;268145;268146 268145 12 YLDMAQQYQHLGPLYEVPEGLR Unmodified 2619.2792 0.27915833 1173 P21177 fadB Fatty acid oxidation complex subunit alpha;Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase;3-hydroxyacyl-CoA dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 48.206 47.035 3 3.0843E-15 22781 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 142.99 140.51 298710000 90292000 89232000 84156000 0 0 0 0 0 0 4393200 0 0 3976100 4208800 0 0 0 2608000 7777600 6138200 5933000 0 0 0 23505 1173 22777 436711;436712;436713;436714;436715;436716;436717;436718;436719;436720 268147;268148;268149 268149 3 YLDNMSEEEILELNIPTGVPLVYEFDENFKPLK Unmodified 3897.9274 0.92742508 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 2 2 2 2 2 2 2 1 1 2 2 2 55.489 54.074 3;4 4.4476E-19 26816 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 153.96 149.64 2526000000 342350000 262970000 287180000 0 0 0 209850000 186520000 169640000 0 0 0 146350000 145070000 86534000 7749800 0 0 260380000 221550000 199820000 0 0 0 23506 1652 22778 436721;436722;436723;436724;436725;436726;436727;436728;436729;436730;436731;436732;436733;436734;436735;436736;436737;436738;436739;436740;436741;436742;436743;436744 268150;268151;268152;268153;268154;268155;268156;268157;268158 268151 9 YLDNMSEEEILELNIPTGVPLVYEFDENFKPLKR Unmodified 4054.0285 0.028536107 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 2 By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 54.924 53.484 4 1.3048E-20 26466 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 157.43 156.04 1667300000 247100000 281990000 0 4238700 5560200 5126800 150960000 143820000 0 0 0 0 111050000 111030000 0 0 0 0 196070000 208480000 201930000 0 0 0 23507 1652 22779 436745;436746;436747;436748;436749;436750;436751;436752;436753;436754;436755;436756 268159;268160;268161;268162;268163;268164;268165;268166;268167 268165 9 YLDVSTLK Unmodified 937.51205 0.51204804 317 P0A784 orn Oligoribonuclease yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 27.468 26.353 2 0.0010836 12369 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 111.82 54.352 829270000 60424000 72792000 76218000 0 0 0 111360000 102880000 0 0 0 0 61185000 53735000 50797000 0 0 0 83541000 83215000 73119000 0 0 0 23508 317 22780 436757;436758;436759;436760;436761;436762;436763;436764;436765;436766;436767;436768 268168;268169;268170;268171;268172;268173;268174;268175 268168 6 YLDWVSGEMK Unmodified 1226.5642 0.56415996 1837 P76223 ynjB Protein YnjB yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 39.324 37.65 2 0.00040695 18569 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 105.1 103.24 101410000 4160600 4945400 3297600 0 0 0 11452000 12115000 11329000 0 0 0 11239000 9271500 8469700 0 0 0 7658300 8416400 9055400 0 0 0 23509 1837 22781 436769;436770;436771;436772;436773;436774;436775;436776;436777;436778;436779;436780 268176;268177;268178;268179;268180;268181;268182 268178 2 YLEENAK Unmodified 865.41815 0.41814765 533 P0A9L3 fklB FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.505 12.379 2 0.0023108 3337 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 114.54 57.087 2009400000 137480000 108190000 91953000 0 734570 964790 211040000 182020000 210440000 0 0 0 157200000 160760000 145760000 0 0 0 201860000 204820000 196140000 0 0 0 23510 533 22782 436781;436782;436783;436784;436785;436786;436787;436788;436789;436790;436791;436792;436793;436794 268183;268184;268185;268186;268187;268188;268189;268190;268191 268188 9 YLEFLEEAR Unmodified 1168.5764 0.57643921 1929 P77712 fadM Long-chain acyl-CoA thioesterase FadM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 41.384 39.877 2 0.00030936 19579 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 117.04 106.81 90176000 31028000 29904000 29243000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23511 1929 22783 436795;436796;436797 268192;268193;268194 268192 3 YLEHYEFR Unmodified 1155.5349 0.53490874 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 21.136 21.229 2;3 0.00039889 6657 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 119.41 114.51 4412700000 13182000 13235000 9588800 5714300 5608900 4874200 579700000 548940000 552900000 429120000 449220000 420140000 169030000 160220000 168040000 43188000 33890000 34618000 191260000 200510000 176140000 78321000 63471000 61834000 23512 1088 22784 436798;436799;436800;436801;436802;436803;436804;436805;436806;436807;436808;436809;436810;436811;436812;436813;436814;436815;436816;436817;436818;436819;436820;436821;436822;436823;436824;436825;436826;436827;436828;436829;436830;436831;436832;436833;436834;436835;436836;436837;436838;436839;436840;436841;436842 268195;268196;268197;268198;268199;268200;268201;268202;268203;268204;268205;268206;268207;268208;268209;268210;268211;268212;268213;268214;268215;268216;268217;268218;268219;268220;268221;268222;268223;268224;268225;268226;268227;268228;268229 268213 30 YLEIDPLSADK Unmodified 1262.6394 0.63943339 450 P0A8N7 epmA Elongation factor P--(R)-beta-lysine ligase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 39.102 37.467 2 0.00013723 17562 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 112.75 108.1 143600000 8644000 9038900 8268200 0 0 0 11016000 12587000 0 0 0 0 17160000 12341000 11317000 0 0 0 18262000 17120000 17846000 0 0 0 23513 450 22785 436843;436844;436845;436846;436847;436848;436849;436850;436851;436852;436853 268230;268231;268232;268233;268234 268234 4 YLELAAQDK Unmodified 1049.5393 0.53932542 301 P0A720 tmk Thymidylate kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 21.916 21.938 2 0.000772 9057 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 101.64 91.657 223270000 18689000 2298800 0 0 0 0 29562000 22931000 0 0 0 0 24759000 18497000 22441000 0 0 0 28342000 26839000 28908000 0 0 0 23514 301 22786 436854;436855;436856;436857;436858;436859;436860;436861;436862;436863 268235;268236;268237;268238;268239;268240;268241;268242 268237 7 YLELFEHVQSAK Unmodified 1462.7456 0.7456298 1646 P62601 treF Cytoplasmic trehalase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 33.17 31.623 3 0.00050843 15355 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 75.849 71.506 65023000 8158500 7455400 8505900 0 0 0 13457000 11784000 13112000 0 0 0 0 0 0 0 0 0 2548700 0 0 0 0 0 23515 1646 22787 436864;436865;436866;436867;436868;436869;436870 268243 268243 1 YLETYFR Unmodified 990.48108 0.48108226 1215 P23839 yicC UPF0701 protein YicC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 31.047 29.69 2 7.0406E-05 13317 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 175.93 154.78 876860000 60243000 50715000 49738000 0 0 0 92577000 87410000 104290000 0 0 0 58618000 59000000 54612000 0 0 0 90424000 84564000 84676000 0 0 0 23516 1215 22788 436871;436872;436873;436874;436875;436876;436877;436878;436879;436880;436881;436882 268244;268245;268246;268247;268248;268249;268250;268251;268252;268253;268254;268255 268254 12 YLFENFAVR Unmodified 1157.5869 0.58694431 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.677 42.129 2 0.0015282 20818 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 104.37 100.04 1022900000 67296000 57026000 52680000 3488900 2484700 2589100 96744000 97918000 93635000 2350600 2559700 3403900 71413000 62597000 57936000 0 1877700 2115800 107450000 113060000 118450000 0 2586900 3184800 23517 292 22789 436883;436884;436885;436886;436887;436888;436889;436890;436891;436892;436893;436894;436895;436896;436897;436898;436899;436900;436901;436902;436903;436904 268256;268257;268258;268259;268260;268261;268262;268263;268264;268265 268258 10 YLGGEELTEAEIK Unmodified 1450.7191 0.71914028 264 P0A6M8 fusA Elongation factor G yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1 2 1 2 1 1 1 3 2 2 1 1 1 4 4 3 1 1 1 34.476 32.962 2 5.6742E-06 14933 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 152.07 134.6 19069000000 1776500000 1576300000 1628300000 16385000 15991000 13081000 1335000000 1170000000 1153000000 11603000 11357000 11445000 1497100000 1584600000 1412000000 5936600 3427900 4424600 1924700000 1969400000 1922800000 9548500 9211100 7359900 23518 264 22790 436905;436906;436907;436908;436909;436910;436911;436912;436913;436914;436915;436916;436917;436918;436919;436920;436921;436922;436923;436924;436925;436926;436927;436928;436929;436930;436931;436932;436933;436934;436935;436936;436937;436938;436939;436940;436941;436942;436943;436944;436945;436946 268266;268267;268268;268269;268270;268271;268272;268273;268274;268275;268276;268277;268278;268279;268280;268281;268282;268283;268284;268285;268286;268287;268288;268289;268290;268291;268292;268293;268294;268295;268296;268297;268298;268299;268300;268301;268302;268303;268304;268305;268306;268307;268308;268309;268310;268311;268312;268313;268314;268315;268316 268303 46 YLGGSVHATAGTLR Unmodified 1401.7365 0.7364621 1776 P75818 ybjP Uncharacterized lipoprotein YbjP yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 17.248 17.96 3 0.056966 4751 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 36.445 30.213 40882000 0 0 11228000 8783100 6463900 6314200 0 8093200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23519 1776 22791 436947;436948;436949;436950;436951 268317;268318 268318 2 YLGIGDYESWSEADK Unmodified 1731.7628 0.76279601 43 P00864 ppc Phosphoenolpyruvate carboxylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.627 43.112 2 5.1368E-12 20189 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 176.42 167.24 859910000 127010000 114720000 114580000 0 0 0 69234000 63750000 59831000 0 0 0 51920000 46082000 39062000 0 0 0 56598000 57570000 59557000 0 0 0 23520 43 22792 436952;436953;436954;436955;436956;436957;436958;436959;436960;436961;436962;436963 268319;268320;268321;268322;268323;268324;268325;268326;268327;268328;268329;268330 268329 12 YLGLPSEEAFK Unmodified 1252.634 0.63395408 543 P0A9P4 trxB Thioredoxin reductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.042 37.34 2 0.00022005 17343 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 118.18 114.57 1017400000 102910000 93612000 91694000 844330 1027600 826760 75292000 60880000 75343000 0 0 0 75114000 70379000 68707000 0 0 0 102210000 98855000 98606000 0 1101200 0 23521 543 22793 436964;436965;436966;436967;436968;436969;436970;436971;436972;436973;436974;436975;436976;436977;436978;436979 268331;268332;268333;268334;268335;268336;268337;268338;268339;268340;268341;268342 268341 12 YLGSDYVVK Unmodified 1042.5335 0.53351176 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.268 24.222 2 0.0031935 10803 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 82.452 61.794 813210000 35522000 40099000 36033000 0 0 0 71782000 59325000 67853000 0 3521900 4863000 75978000 85134000 64141000 914700 0 0 87373000 90389000 90278000 0 0 0 23522 124 22794 436980;436981;436982;436983;436984;436985;436986;436987;436988;436989;436990;436991;436992;436993;436994 268343;268344;268345;268346;268347;268348 268344 6 YLGSFDAQSPEK Unmodified 1340.6248 0.62484596 1492 P37749 wbbI Beta-1,6-galactofuranosyltransferase WbbI yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.082 23.996 2 1.831E-06 8685 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 145.89 142.35 597060000 13424000 9504100 11948000 3105700 3492900 3196200 47591000 52274000 47707000 24139000 22876000 23395000 35538000 32489000 33539000 0 0 3690700 58299000 65401000 63079000 14321000 13845000 14209000 23523 1492 22795 436995;436996;436997;436998;436999;437000;437001;437002;437003;437004;437005;437006;437007;437008;437009;437010;437011;437012;437013;437014;437015;437016 268349;268350;268351;268352;268353;268354 268349 6 YLGTIMSPWAAK Unmodified 1336.6849 0.6849438 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 43.145 41.63 2 2.8175E-05 20237 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.52 104.28 466010000 90841000 90174000 82517000 0 0 0 44728000 54080000 43615000 0 0 0 10943000 10068000 11188000 0 0 0 7778700 8692700 11382000 0 0 0 23524 757 22796 437017;437018;437019;437020;437021;437022;437023;437024;437025;437026;437027;437028 268355;268356;268357 268357 2 YLGTWYEIAR Unmodified 1270.6346 0.63462279 476 P0A901 blc Outer membrane lipoprotein Blc yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 41.832 39.926 2 0.075838 15863 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 59.931 40.952 32544000 0 0 0 2256100 2695500 2341300 0 0 0 5893100 5857200 4511300 0 0 0 2544200 0 0 0 0 0 2044000 2060200 2341500 23525 476 22797 437029;437030;437031;437032;437033;437034;437035;437036;437037;437038 268358;268359 268359 0 YLGVLLYDADAIER Unmodified 1609.8352 0.83517309 1067 P11349 narH Respiratory nitrate reductase 1 beta chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.224 49.92 2 5.1311E-06 23267 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 134.75 130.99 487170000 8740100 11096000 9062000 0 0 0 0 0 0 14467000 16116000 17736000 42740000 43261000 45032000 0 0 0 0 64949000 62893000 50617000 51318000 49142000 23526 1067 22798 437039;437040;437041;437042;437043;437044;437045;437046;437047;437048;437049;437050;437051;437052 268360;268361;268362;268363;268364;268365;268366;268367;268368 268368 9 YLHCNLCETEWHVVR Unmodified 2014.9142 0.91418524 1085 P13024 fdhE Protein FdhE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 26.09 24.927 3;4 1.1502E-20 11253 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 216.15 215.6 1352200000 138160000 142700000 139960000 1860000 2476300 1991900 116430000 111090000 101470000 0 0 1761300 84125000 77955000 77132000 0 0 0 117290000 122900000 111740000 0 1957200 1174200 23527 1085 22799 437053;437054;437055;437056;437057;437058;437059;437060;437061;437062;437063;437064;437065;437066;437067;437068;437069;437070;437071;437072;437073;437074;437075;437076;437077;437078;437079;437080;437081;437082;437083;437084;437085;437086 268369;268370;268371;268372;268373;268374;268375;268376;268377;268378;268379;268380;268381;268382;268383;268384;268385;268386;268387;268388;268389;268390 268373 22 YLHLADK Unmodified 858.45995 0.45995289 556 P0A9T4 tas Protein tas yes yes 0 0 0 By MS/MS 1 13.462 14.31 2 0.098315 4382 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 54.205 17.649 33181000 0 0 33181000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23528 556 22800 437087 268391 268391 1 YLHPSWLLK Unmodified 1155.6441 0.64406526 1449 P36929 rsmB Ribosomal RNA small subunit methyltransferase B yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.617 31.062 3 0.029949 14679 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 56.434 54.547 88153000 9329400 9676300 9881500 0 0 0 6981300 8438100 4261100 1714700 1819100 1391200 3205900 2845800 2749800 0 0 0 9341600 8060900 8455900 0 0 0 23529 1449 22801 437088;437089;437090;437091;437092;437093;437094;437095;437096;437097;437098;437099;437100;437101;437102 268392;268393;268394;268395;268396;268397;268398 268395 7 YLHSDIDTVER Unmodified 1346.6466 0.64664404 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 16.544 17.302 2;3 5.4594E-05 5785 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 96.113 90.271 286100000 45723000 37199000 29641000 0 0 0 28148000 27637000 28363000 0 0 0 14263000 15369000 13934000 0 0 0 15097000 14417000 16311000 0 0 0 23530 426 22802 437103;437104;437105;437106;437107;437108;437109;437110;437111;437112;437113;437114;437115;437116;437117;437118;437119;437120;437121;437122;437123;437124;437125;437126 268399;268400;268401;268402;268403;268404;268405;268406;268407;268408;268409;268410;268411;268412;268413;268414;268415;268416;268417 268416 19 YLIAAGQK Unmodified 862.49125 0.49125301 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 16.863 17.562 2 0.0015707 6220 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 107.74 86.042 603780000 208520000 210890000 184370000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23531 1610 22803 437127;437128;437129 268418;268419;268420 268419 3 YLLANDVAK Unmodified 1005.5495 0.54949617 1294 P27248 gcvT Aminomethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.964 23.067 2 0.0010929 9980 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.374 74.971 3379000000 241400000 257970000 211210000 0 0 0 317350000 323120000 299790000 0 0 0 273450000 272320000 272140000 0 0 0 330450000 312630000 267190000 0 0 0 23532 1294 22804 437130;437131;437132;437133;437134;437135;437136;437137;437138;437139;437140;437141 268421;268422;268423;268424;268425;268426;268427;268428;268429;268430;268431;268432 268428 12 YLLASLDQSLKR Unmodified 1405.7929 0.79291434 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 33.787 32.326 3 2.0723E-06 15334 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 134.13 124.62 58982000 12010000 18671000 13617000 0 0 0 6020700 4891800 0 0 0 0 0 1486300 0 0 0 0 0 2285300 0 0 0 0 23533 1958 22805 437142;437143;437144;437145;437146;437147;437148 268433;268434;268435 268434 3 YLLCGHIHQELDLDWNGR Unmodified 2238.064 0.0640206 890 P0AEW4 cpdA 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 44.151 42.615 3 0.15591 20644 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 14.922 11.824 1075700000 69103000 50092000 46264000 0 0 0 91889000 94274000 80059000 0 0 0 148990000 153590000 0 0 0 0 17890000 160910000 162620000 0 0 0 23534 890 22806 437149;437150;437151;437152;437153;437154;437155;437156;437157;437158;437159 268436;268437;268438;268439;268440;268441;268442;268443;268444;268445 268440 10 YLLCNADEMEPGTYK Unmodified 1802.7855 0.78552206 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.885 33.189 2 2.3215E-35 15826 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 249.5 249.5 448080000 25121000 24776000 24238000 1767900 2376800 2303300 30381000 28023000 31783000 4407500 2777900 2317400 35905000 34604000 32375000 0 0 0 48002000 53180000 53130000 3555000 4104100 2948400 23535 1383 22807 437160;437161;437162;437163;437164;437165;437166;437167;437168;437169;437170;437171;437172;437173;437174;437175;437176;437177;437178;437179;437180 268446;268447;268448;268449;268450;268451;268452;268453;268454;268455;268456;268457;268458;268459;268460;268461;268462;268463;268464;268465 268457 19 YLLCNADEMEPGTYKDR Unmodified 2073.9136 0.91357612 1383 P31979 nuoF NADH-quinone oxidoreductase subunit F yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.935 27.943 3 9.5897E-05 9441 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 73.464 73.055 104970000 0 0 0 15933000 16306000 17374000 6522900 0 0 0 0 0 2638700 3359800 4578300 7865100 6530000 4517400 6081800 6477900 6782300 0 0 0 23536 1383 22808 437181;437182;437183;437184;437185;437186;437187;437188;437189;437190;437191;437192;437193;437194;437195;437196 268466;268467;268468;268469;268470;268471;268472;268473;268474 268473 9 YLLDQGYHVIPVSPK Unmodified 1727.9247 0.9246568 1786 P75874 yccU Uncharacterized protein YccU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 37.332 35.653 2;3 1.8001E-35 17704 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 254.4 245.99 2902500000 367450000 378140000 302300000 1327200 1729900 1033100 344540000 343150000 350220000 0 0 0 126770000 123940000 133960000 0 0 0 157890000 120810000 149230000 0 0 0 23537 1786 22809 437197;437198;437199;437200;437201;437202;437203;437204;437205;437206;437207;437208;437209;437210;437211;437212;437213;437214;437215;437216;437217;437218;437219;437220;437221;437222;437223 268475;268476;268477;268478;268479;268480;268481;268482;268483;268484;268485;268486;268487;268488;268489;268490;268491;268492;268493;268494;268495;268496;268497;268498 268476 24 YLLDSVSR Unmodified 951.50255 0.50254598 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.149 25.819 2 0.0003557 11754 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 143.85 120.92 340850000 24136000 22534000 19737000 0 3828000 3997800 20869000 21188000 24270000 9621900 10068000 7651400 19385000 20944000 18001000 0 0 0 33586000 30949000 31721000 5904200 6146500 6314900 23538 1909 22810 437224;437225;437226;437227;437228;437229;437230;437231;437232;437233;437234;437235;437236;437237;437238;437239;437240;437241;437242;437243 268499;268500;268501;268502;268503;268504;268505;268506 268500 8 YLLDTDFTVNDELVK Unmodified 1783.888 0.88799652 880 P0AES0 gss Bifunctional glutathionylspermidine synthetase/amidase;Glutathionylspermidine amidase;Glutathionylspermidine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.622 49.262 2 3.6311E-09 23125 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 154.15 133.28 273530000 18596000 17624000 17816000 0 0 0 31345000 33945000 29155000 0 0 0 25447000 19332000 17261000 0 0 0 21925000 22510000 18579000 0 0 0 23539 880 22811 437244;437245;437246;437247;437248;437249;437250;437251;437252;437253;437254;437255 268507;268508;268509;268510;268511;268512;268513;268514;268515;268516;268517;268518 268517 12 YLLGTEHGIQGK Unmodified 1314.6932 0.6932003 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 18.812 19.172 2;3 1.5688E-08 7286 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 177.78 147.97 1603700000 27093000 28502000 34700000 9195800 9538500 9161200 123180000 112390000 112350000 36811000 36548000 32195000 89039000 73515000 70219000 5106700 3121900 5484500 158180000 144200000 148730000 114410000 111250000 108790000 23540 205 22812 437256;437257;437258;437259;437260;437261;437262;437263;437264;437265;437266;437267;437268;437269;437270;437271;437272;437273;437274;437275;437276;437277;437278;437279;437280;437281;437282;437283;437284;437285;437286;437287;437288;437289;437290;437291;437292;437293;437294;437295;437296;437297;437298;437299;437300 268519;268520;268521;268522;268523;268524;268525;268526;268527;268528;268529;268530;268531;268532;268533;268534;268535;268536;268537;268538;268539;268540;268541;268542;268543;268544;268545;268546;268547;268548;268549;268550;268551;268552;268553 268535 35 YLLLPNNPNMVIVDTK Unmodified 1842.9914 0.99135615 554 P0A9S5 gldA Glycerol dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.086 48.679 2 5.1064E-07 24210 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.45 131.48 874660000 41118000 36137000 32946000 0 0 0 152810000 144970000 132390000 0 0 0 73664000 63077000 65827000 0 0 0 42775000 43876000 45071000 0 0 0 23541 554 22813 437301;437302;437303;437304;437305;437306;437307;437308;437309;437310;437311;437312 268554;268555;268556;268557;268558;268559;268560;268561;268562;268563;268564;268565 268554 12 YLLLQQFSNPANPEIHEK Unmodified 2140.0953 0.095303954 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 3 2 3 2 3 3 3 3 3 3 3 4 3 1 2 1 39.636 37.924 2;3;4 1.0506E-22 18327 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 227.91 220.54 23882000000 2089200000 2241900000 1825100000 25545000 23769000 24214000 2310500000 2169100000 2169100000 0 0 0 1533100000 1616000000 1514900000 0 0 0 2118700000 2087200000 2106000000 9090500 10766000 8346500 23542 666 22814 437313;437314;437315;437316;437317;437318;437319;437320;437321;437322;437323;437324;437325;437326;437327;437328;437329;437330;437331;437332;437333;437334;437335;437336;437337;437338;437339;437340;437341;437342;437343;437344;437345;437346;437347;437348;437349;437350;437351;437352;437353;437354;437355;437356;437357;437358;437359;437360 268566;268567;268568;268569;268570;268571;268572;268573;268574;268575;268576;268577;268578;268579;268580;268581;268582;268583;268584;268585;268586;268587;268588;268589;268590;268591;268592;268593;268594;268595;268596;268597;268598;268599 268589 34 YLLNLLK Unmodified 875.54804 0.54803961 1573 P45524 yheT Putative esterase YheT yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 42.767 40.582 2 0.019434 16713 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 77.72 57.838 22167000 0 0 0 0 0 0 2113200 3382100 2324800 2974200 2490200 2602200 2078000 0 0 0 0 0 2709200 0 0 1492800 0 0 23543 1573 22815 437361;437362;437363;437364;437365;437366;437367;437368;437369 268600;268601;268602 268600 3 YLLVASAIGSLYK Unmodified 1396.7966 0.79660274 1343 P30744 sdaB L-serine dehydratase 2 yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 50.953 49.606 2 1.1232E-05 24187 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.67 116.77 318480000 18206000 16028000 16359000 2090400 1743100 1477700 14100000 16058000 10828000 3441800 5569600 3460200 25014000 20312000 22449000 0 0 0 40274000 44303000 42387000 6771800 4233600 3370200 23544 1343 22816 437370;437371;437372;437373;437374;437375;437376;437377;437378;437379;437380;437381;437382;437383;437384;437385;437386;437387;437388;437389;437390 268603;268604;268605;268606;268607;268608 268605 2 YLMGVGKPEDLVEGVR Unmodified 1760.9131 0.91310583 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37.215 35.755 3 5.6775E-05 12278 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 78.69 75.028 171790000 0 0 0 0 0 0 11908000 12849000 0 2012600 0 0 11955000 14684000 14117000 17177000 18380000 22672000 14934000 15451000 12634000 1553200 1464600 0 23545 395 22817 437391;437392;437393;437394;437395;437396;437397;437398;437399;437400;437401;437402;437403;437404 268609;268610;268611;268612 268611 4 YLMGVGKPEDLVEGVRR Unmodified 1917.0142 0.014216861 395 P0A847 tgt Queuine tRNA-ribosyltransferase yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 2 2 1 1 2 31.383 30.427 3;4 6.346E-07 9925 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 104.45 103.97 98014000 0 0 0 0 0 0 0 0 0 0 1730900 2204300 0 0 0 28722000 29718000 29619000 0 0 0 1516200 1450700 3053400 23546 395 22818 437405;437406;437407;437408;437409;437410;437411;437412;437413;437414;437415;437416 268613;268614;268615;268616;268617;268618 268616 6 YLMIGAAEHGFVDTVR Unmodified 1777.8821 0.88214006 1355 P30958 mfd Transcription-repair-coupling factor yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.236 36.881 3 0.12145 18432 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 32.815 28.871 65397000 9257900 6545800 7278500 0 0 0 7452800 0 0 0 1322700 978090 4485800 0 3734400 1895400 1520400 1848100 5945500 7207000 5925300 0 0 0 23547 1355 22819 437417;437418;437419;437420;437421;437422;437423;437424;437425;437426;437427;437428;437429;437430 268619;268620 268619 0 YLNFNQLSQYTEK Unmodified 1646.794 0.79403656 1444 P36683 acnB Aconitate hydratase B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 39.908 38.239 2;3 5.3303E-25 19573 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 247.54 243.29 6518700000 1011700000 893870000 820440000 14457000 13707000 16702000 374530000 347160000 324480000 0 0 0 317360000 300630000 309680000 0 1197300 0 607710000 582470000 536540000 14882000 14025000 17163000 23548 1444 22820 437431;437432;437433;437434;437435;437436;437437;437438;437439;437440;437441;437442;437443;437444;437445;437446;437447;437448;437449;437450;437451;437452;437453;437454;437455;437456;437457;437458;437459;437460;437461;437462;437463;437464;437465;437466;437467 268621;268622;268623;268624;268625;268626;268627;268628;268629;268630;268631;268632;268633;268634;268635;268636;268637;268638;268639;268640;268641;268642;268643;268644;268645;268646 268621 24 YLNGHSDVVAGVVIAK Unmodified 1640.8886 0.88860564 53 P00935 metB Cystathionine gamma-synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 17.582 18.309 4 0.17201 6766 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 5.5426 2.9081 238230000 0 0 0 0 9855600 0 58946000 0 0 0 0 0 36445000 32935000 0 0 0 0 47570000 0 52483000 0 0 0 23549 53 22821 437468;437469;437470;437471;437472;437473 268647;268648 268647 2 YLNGIPQDSR Unmodified 1161.5778 0.57783619 1958 Q46851 gpr L-glyceraldehyde 3-phosphate reductase yes yes 0 0 0 By MS/MS By matching 1 1 20.196 20.718 2 0.00059091 8114 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 93.111 83.124 17757000 0 9851700 7905500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23550 1958 22822 437474;437475 268649 268649 1 YLNLLDYSHNVLLASDVEQFAK Unmodified 2551.2959 0.29585426 1221 P23865 prc Tail-specific protease yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.268 52.952 3 9.6131E-05 25952 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 78.324 71.449 633660000 71826000 65954000 48635000 0 0 0 0 35727000 32612000 0 0 0 48858000 50782000 47859000 0 3422100 0 81184000 75464000 68396000 0 2943900 0 23551 1221 22823 437476;437477;437478;437479;437480;437481;437482;437483;437484;437485;437486;437487;437488 268650 268650 1 YLPAQPGK Unmodified 872.4756 0.47560295 1272 P25745 mnmA tRNA-specific 2-thiouridylase MnmA yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 1 2 1 1 2 2 2 2 2 1 13.642 14.505 1;2 0.011103 4539 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 105.27 101.57 428000000 49253000 46467000 45648000 0 1821100 1754500 25371000 28685000 27292000 0 0 0 24994000 32077000 31259000 0 0 0 38316000 35395000 38422000 0 1242700 0 23552 1272 22824 437489;437490;437491;437492;437493;437494;437495;437496;437497;437498;437499;437500;437501;437502;437503;437504;437505;437506;437507;437508;437509;437510;437511;437512 268651;268652;268653 268653 1 YLPESPNQYASK Unmodified 1395.667 0.66704513 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.735 20.989 2 3.7597E-07 8655 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 155.42 150.48 573810000 37210000 38423000 35473000 0 0 0 42873000 40758000 39470000 0 0 0 48443000 59349000 44676000 5851800 3317000 3160300 51418000 60387000 60000000 0 2999700 0 23553 124 22825 437513;437514;437515;437516;437517;437518;437519;437520;437521;437522;437523;437524;437525;437526;437527;437528 268654;268655;268656;268657;268658;268659;268660;268661;268662;268663;268664;268665;268666;268667;268668 268657 15 YLPGLIK Unmodified 802.49528 0.49527576 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.609 28.329 2 0.037838 13534 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 65.263 26.892 416210000 27679000 23079000 23155000 0 0 0 38760000 42281000 37211000 0 0 0 32185000 31864000 27138000 0 0 0 41806000 43882000 47174000 0 0 0 23554 1421 22826 437529;437530;437531;437532;437533;437534;437535;437536;437537;437538;437539;437540 268669;268670;268671;268672;268673;268674;268675;268676 268670 8 YLPTAMLTK Unmodified 1036.5627 0.5627034 167 P07650 deoA Thymidine phosphorylase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 31.592 30.236 2 0.0047079 14578 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 77.072 73.613 1489100000 23171000 22676000 31581000 0 0 0 215500000 210000000 203340000 0 0 0 122930000 137100000 127260000 0 0 0 137460000 131720000 126360000 0 0 0 23555 167 22827 437541;437542;437543;437544;437545;437546;437547;437548;437549;437550;437551;437552 268677;268678;268679 268678 3 YLQDYGMGPETPLGEPK Unmodified 1893.8819 0.88186528 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.608 36.917 2 1.8145E-10 18104 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 143.98 143.91 871760000 12601000 9332000 10855000 2351500 2864500 2668300 113490000 109190000 93788000 33622000 36845000 35552000 81005000 75992000 77616000 6517400 3218900 0 53275000 47459000 38578000 8788700 7245300 8898300 23556 25 22828 437553;437554;437555;437556;437557;437558;437559;437560;437561;437562;437563;437564;437565;437566;437567;437568;437569;437570;437571;437572;437573;437574;437575;437576 268680;268681;268682;268683;268684;268685;268686;268687;268688;268689;268690;268691;268692;268693;268694;268695;268696;268697;268698;268699;268700 268687 21 YLQEGGTFK Unmodified 1041.5131 0.51311067 1420 P33362 osmF Putative osmoprotectant uptake system substrate-binding protein OsmF yes yes 0 0 0 By MS/MS 1 17.419 18.117 2 0.00071355 6574 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 101.64 82.007 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23557 1420 22829 437577 268701 268701 1 YLQTQPLVK Unmodified 1088.623 0.62299547 53 P00935 metB Cystathionine gamma-synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 21.825 21.822 2 0.0044684 9146 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 77.923 63.92 106020000 0 0 0 0 0 0 19993000 19213000 22039000 0 0 0 6251900 5682500 5660400 0 0 0 11045000 8426700 7712700 0 0 0 23558 53 22830 437578;437579;437580;437581;437582;437583;437584;437585;437586 268702;268703;268704 268704 3 YLSDHPK Unmodified 858.42357 0.42356738 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.484 11.168 2 0.027688 2566 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 69.383 65.166 9515400000 848340000 746120000 672440000 0 0 0 2312000000 2010500000 2417300000 11123000 12495000 14159000 70295000 72405000 72186000 0 0 0 106280000 76631000 73120000 0 0 0 23559 1755;1756 22831 437587;437588;437589;437590;437591;437592;437593;437594;437595;437596;437597;437598;437599;437600;437601 268705;268706;268707;268708;268709 268706 5 YLSENAHK Unmodified 960.46649 0.46649483 1399 P32695 dusA tRNA-dihydrouridine synthase A yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 10.283 11.087 2 0.014763 2450 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 71.296 60.604 79986000 9808200 10558000 10056000 0 0 0 2304500 4381200 4158200 0 0 0 9138000 9281700 8204700 0 0 0 12095000 0 0 0 0 0 23560 1399 22832 437602;437603;437604;437605;437606;437607;437608;437609;437610;437611 268710;268711 268710 2 YLSLLPYTDR Unmodified 1239.6499 0.6499385 370 P0A7T7 rpsR 30S ribosomal protein S18 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.042 41.529 2 1.1174E-08 19453 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 180.44 168.59 7052000000 1010200000 906910000 918370000 19546000 19717000 17959000 359530000 294700000 300280000 67961000 65100000 58065000 341120000 355120000 341400000 29646000 25202000 26607000 564510000 626250000 603370000 34406000 34458000 31633000 23561 370 22833 437612;437613;437614;437615;437616;437617;437618;437619;437620;437621;437622;437623;437624;437625;437626;437627;437628;437629;437630;437631;437632;437633;437634;437635 268712;268713;268714;268715;268716;268717;268718;268719;268720;268721;268722;268723;268724;268725;268726;268727;268728;268729;268730;268731;268732;268733;268734 268732 22 YLSLLTGELPR Unmodified 1260.7078 0.70778773 1436 P34209 ydcF Protein YdcF yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 45.43 44.039 2 1.5697E-07 21476 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 169.09 137.15 347100000 77873000 65114000 72244000 0 0 0 0 23551000 23214000 0 0 0 15677000 14170000 11974000 0 0 0 0 22872000 20410000 0 0 0 23562 1436 22834 437636;437637;437638;437639;437640;437641;437642;437643;437644;437645;437646;437647 268735;268736;268737;268738;268739;268740;268741;268742;268743 268738 9 YLSQQIDVWR Unmodified 1306.667 0.66698555 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.814 35.021 2 9.5918E-09 16900 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 183.65 163.02 367040000 62715000 60680000 58186000 1132800 1395600 1597000 25038000 24807000 20910000 2265700 1994100 1815200 13749000 13779000 7993100 0 0 0 22601000 21642000 19067000 1668000 1815500 2193900 23563 748 22835 437648;437649;437650;437651;437652;437653;437654;437655;437656;437657;437658;437659;437660;437661;437662;437663;437664;437665;437666;437667;437668 268744;268745;268746;268747;268748;268749;268750;268751;268752;268753 268748 6 YLSTALFADLFTEK Unmodified 1617.829 0.82902508 666 P0ABK5 cysK Cysteine synthase A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 1 1 1 3 2 3 1 1 1 2 2 2 2 3 2 1 1 55.058 53.588 2;3 2.7162E-15 26665 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 201.09 194.85 15092000000 1266500000 1297200000 1284400000 9556900 9801000 10182000 1493200000 1342800000 1146300000 3115400 4709900 5975400 1038800000 925970000 1008400000 0 0 0 1412300000 1471100000 1353700000 3160500 4496500 0 23564 666 22836 437669;437670;437671;437672;437673;437674;437675;437676;437677;437678;437679;437680;437681;437682;437683;437684;437685;437686;437687;437688;437689;437690;437691;437692;437693;437694;437695;437696;437697;437698;437699;437700;437701;437702;437703;437704 268754;268755;268756;268757;268758;268759;268760;268761;268762;268763;268764;268765;268766;268767;268768;268769;268770;268771;268772;268773;268774;268775;268776;268777 268769 24 YLSTGVFGEEHFSQGAGI Unmodified 1897.8846 0.88464248 1133 P16703 cysM Cysteine synthase B yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 44.272 42.757 2 0.00019439 20724 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 93.011 92.407 184230000 9162300 8525800 8212400 0 0 0 18949000 16901000 10739000 0 0 0 18686000 16216000 12930000 0 0 0 22893000 22203000 18812000 0 0 0 23565 1133 22837 437705;437706;437707;437708;437709;437710;437711;437712;437713;437714;437715;437716 268778;268779;268780;268781;268782;268783;268784 268781 7 YLSVIPAEDVIAATEK Unmodified 1717.9138 0.91381734 1271 P25742 rfaQ Lipopolysaccharide core heptosyltransferase RfaQ yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 49.458 47.977 2 2.81E-08 19507 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 121.04 115.07 21013000 0 0 0 886400 884740 692900 0 0 0 6064700 5731400 0 0 0 0 0 0 0 0 0 0 2694500 1995600 2063100 23566 1271 22838 437717;437718;437719;437720;437721;437722;437723;437724 268785 268785 1 YLTEQGFQVR Unmodified 1239.6248 0.62478638 570 P0AA16 ompR Transcriptional regulatory protein OmpR yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.719 26.514 2 1.0027E-08 12069 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 198.87 186.64 1712900000 297770000 0 0 15757000 15055000 11921000 161920000 157210000 158460000 13061000 12300000 13093000 106090000 96470000 91488000 41480000 31003000 29260000 157490000 151580000 136440000 5992600 0 9073900 23567 570 22839 437725;437726;437727;437728;437729;437730;437731;437732;437733;437734;437735;437736;437737;437738;437739;437740;437741;437742;437743;437744;437745;437746;437747 268786;268787;268788;268789;268790;268791;268792;268793;268794;268795;268796;268797;268798;268799;268800;268801;268802;268803;268804;268805;268806;268807 268802 22 YLTGNQLTEADIR Unmodified 1492.7522 0.75217174 1557 P42620 yqjG Glutathionyl-hydroquinone reductase YqjG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 29.962 28.606 2 9.8401E-32 13181 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 266.17 248.77 364000000 63372000 59364000 47714000 0 0 0 41627000 36663000 38330000 0 0 0 12334000 11113000 11246000 0 0 0 12730000 13090000 16412000 0 0 0 23568 1557 22840 437748;437749;437750;437751;437752;437753;437754;437755;437756;437757;437758;437759 268808;268809;268810;268811;268812;268813;268814;268815;268816;268817;268818;268819 268816 12 YLVDHEWVR Unmodified 1215.6037 0.60365701 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 25.149 24.12 2;3 1.0114E-05 8804 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 196.77 185.94 4737600000 15974000 33545000 30854000 6508100 4452300 2135800 604540000 617860000 621600000 441610000 414040000 378180000 197050000 190640000 167580000 39104000 39167000 46149000 255150000 216060000 224410000 66083000 64562000 60324000 23569 1088 22841 437760;437761;437762;437763;437764;437765;437766;437767;437768;437769;437770;437771;437772;437773;437774;437775;437776;437777;437778;437779;437780;437781;437782;437783;437784;437785;437786;437787;437788;437789;437790;437791;437792;437793;437794;437795;437796;437797;437798;437799;437800;437801;437802;437803;437804;437805;437806 268820;268821;268822;268823;268824;268825;268826;268827;268828;268829;268830;268831;268832;268833;268834;268835;268836;268837;268838;268839;268840;268841;268842;268843;268844;268845;268846;268847 268825 28 YLVFMPGASHVGVSQR Unmodified 1746.8876 0.88755978 526 P0A9J0 rng Ribonuclease G yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 34.617 33.169 3 0.00014433 15640 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 68.919 62.191 87098000 13771000 13450000 13921000 0 0 0 5253200 3669000 3301100 0 0 0 4273900 5487800 3938300 0 0 0 8494200 5704500 5833700 0 0 0 23570 526 22842 437807;437808;437809;437810;437811;437812;437813;437814;437815;437816;437817;437818 268848;268849 268849 2 YLVGHSDAMIGTAVCNAR Unmodified 1933.9139 0.91385089 130 P06721 metC Cystathionine beta-lyase MetC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 27.858 26.711 3 8.7142E-10 12054 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 120.66 116.21 183590000 26000000 19042000 19719000 0 0 0 13876000 20254000 16500000 0 0 0 10702000 11142000 9232100 0 0 0 11526000 13631000 11969000 0 0 0 23571 130 22843 437819;437820;437821;437822;437823;437824;437825;437826;437827;437828;437829;437830 268850;268851;268852;268853;268854;268855 268855 6 YLVSQVMLSEEDRFEALK Unmodified 2156.0824 0.082356006 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.808 44.209 3 1.6856E-06 21572 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.344 86.153 271890000 6774200 0 5187100 0 0 0 8425700 8451800 5939400 6942200 10283000 8209700 16416000 14515000 13325000 3783900 0 0 39483000 44513000 39834000 12228000 15879000 11703000 23572 1435 22844 437831;437832;437833;437834;437835;437836;437837;437838;437839;437840;437841;437842;437843;437844;437845;437846;437847;437848 268856;268857;268858;268859 268857 4 YLVSQVMLSEEDRFEALKEYYPQAK Unmodified 3035.495 0.49502435 1435 P33940 mqo Malate:quinone oxidoreductase yes yes 0 0 2 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 47.68 46.562 4 5.8175E-05 18472 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 81.373 79.443 102100000 0 0 0 1939900 1843100 0 0 0 0 12624000 13568000 0 0 0 0 6549200 7026900 6159700 0 0 0 15268000 17949000 19169000 23573 1435 22845 437849;437850;437851;437852;437853;437854;437855;437856;437857;437858 268860;268861;268862;268863;268864;268865 268864 6 YLWNDQQGWYADYDLK Unmodified 2076.9218 0.92175626 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.211 49.955 2 1.2349E-30 24399 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 232.5 232.5 196510000 42161000 36232000 34985000 0 0 0 15786000 13388000 11801000 0 0 0 5349600 5922400 5214200 0 0 0 8226900 8830600 8613800 0 0 0 23574 1091 22846 437859;437860;437861;437862;437863;437864;437865;437866;437867;437868;437869;437870 268866;268867;268868 268867 3 YLYGVKPGATR Unmodified 1223.6663 0.66625727 1576 P45577 proQ RNA chaperone ProQ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 16.009 16.541 2;3 7.84E-06 5669 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 153.05 148.43 1167700000 35469000 35547000 83864000 4402300 4107600 3828700 84498000 91790000 83859000 59788000 41470000 50764000 74578000 60816000 63778000 25334000 18315000 14765000 97345000 90812000 79811000 19642000 21000000 22108000 23575 1576 22847 437871;437872;437873;437874;437875;437876;437877;437878;437879;437880;437881;437882;437883;437884;437885;437886;437887;437888;437889;437890;437891;437892;437893;437894;437895;437896;437897;437898;437899;437900;437901;437902;437903;437904;437905;437906;437907;437908;437909;437910;437911;437912;437913;437914;437915 268869;268870;268871;268872;268873;268874;268875;268876;268877;268878;268879;268880;268881;268882;268883;268884;268885;268886;268887;268888;268889;268890;268891;268892;268893;268894;268895;268896;268897;268898;268899;268900;268901;268902;268903;268904 268892 35 YLYSMGEHPSTSDQDNSFK Unmodified 2204.9321 0.93206295 486 P0A940 bamA Outer membrane protein assembly factor BamA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25.707 24.44 3 6.4597E-05 10848 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 76.155 76.155 79444000 0 0 0 0 0 0 0 3806200 4201300 4723600 3837900 3611500 6358800 5172800 5869100 0 0 0 10845000 10808000 13219000 2254700 2281300 2454800 23576 486 22848 437916;437917;437918;437919;437920;437921;437922;437923;437924;437925;437926;437927;437928;437929 268905;268906;268907 268906 2 YLYSVTSPDDSLR Unmodified 1514.7253 0.72528829 649 P0ABC7 hflK Modulator of FtsH protease HflK yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.968 32.461 2 6.2907E-24 15406 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 236.33 232.04 726610000 0 0 0 13810000 11575000 16305000 62787000 64906000 54247000 29344000 31636000 19496000 44771000 38422000 45533000 5804900 6281000 8736600 70955000 78980000 67923000 16607000 17374000 21112000 23577 649 22849 437930;437931;437932;437933;437934;437935;437936;437937;437938;437939;437940;437941;437942;437943;437944;437945;437946;437947;437948;437949;437950;437951 268908;268909;268910;268911;268912;268913;268914;268915;268916;268917;268918;268919;268920;268921;268922;268923;268924;268925;268926;268927;268928 268921 21 YLYVGVRPEFR Unmodified 1397.7456 0.74557022 1610 P52697 pgl 6-phosphogluconolactonase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 2 2 30.816 29.673 2;3 1.3835E-06 13907 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 90.685 80.842 408150000 64585000 64873000 278690000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23578 1610 22850 437952;437953;437954;437955;437956;437957 268929;268930;268931;268932;268933;268934 268930 6 YMACTNEECK Unmodified 1304.4835 0.48354315 124 P06612 topA DNA topoisomerase 1 yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.975 12.524 2 2.9702E-05 3465 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.16 145.16 288960000 17084000 19648000 24046000 0 0 0 22422000 14758000 22572000 1721500 2311600 2360500 25630000 31592000 22442000 3727100 3728700 4582900 18307000 22014000 22422000 3304800 4284300 0 23579 124 22851 437958;437959;437960;437961;437962;437963;437964;437965;437966;437967;437968;437969;437970;437971;437972;437973;437974;437975;437976;437977 268935;268936;268937;268938;268939;268940;268941;268942 268939 8 YMAGDPTAGK Unmodified 1009.4539 0.45388123 1742 P69786 ptsG PTS system glucose-specific EIICB component;Glucose permease IIC component;Glucose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 13.061 13.635 2 0.0012791 3365 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 85.676 84.471 534090000 0 61396000 0 12607000 10427000 12738000 77668000 67636000 61166000 49683000 63067000 59657000 0 0 0 0 0 0 0 0 0 17830000 22216000 17999000 23580 1742 22852 437978;437979;437980;437981;437982;437983;437984;437985;437986;437987;437988;437989;437990 268943;268944;268945;268946;268947;268948 268945 6 YMANAMGPEGVR Unmodified 1294.5798 0.5798268 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.061 21.874 2 1.0134E-17 8985 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 223.84 217.01 6791600000 710040000 618890000 522220000 2793900 2643700 2039700 533590000 582980000 512790000 2998100 1909900 3276300 508650000 473970000 451430000 2670100 1214500 1469300 627280000 635830000 586760000 2709400 1797600 1676400 23581 869 22853 437991;437992;437993;437994;437995;437996;437997;437998;437999;438000;438001;438002;438003;438004;438005;438006;438007;438008;438009;438010;438011;438012;438013;438014 268949;268950;268951;268952;268953;268954;268955;268956;268957;268958;268959;268960;268961;268962;268963 268955 15 YMANAMGPEGVR Oxidation (M) 1310.5747 0.57474142 869 P0AEK4 fabI Enoyl-[acyl-carrier-protein] reductase [NADH] FabI yes yes 0 1 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 4 5 4 3 4 3 3 2 3 17.71 18.316 2 1.8198E-06 6760 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 103.7 91.653 310530000 21868000 22871000 13976000 0 0 0 37703000 44193000 33211000 0 0 0 20724000 21025000 18984000 0 0 0 30649000 21053000 24275000 0 0 0 23582 869 22853 438015;438016;438017;438018;438019;438020;438021;438022;438023;438024;438025;438026;438027;438028;438029;438030;438031;438032;438033;438034;438035;438036;438037;438038;438039;438040;438041;438042;438043;438044;438045;438046;438047;438048;438049;438050;438051;438052;438053;438054 268964;268965;268966;268967;268968;268969;268970;268971;268972;268973;268974;268975;268976;268977;268978;268979;268980;268981;268982;268983;268984;268985;268986;268987;268988;268989;268990;268991;268992;268993;268994;268995;268996;268997;268998;268999;269000;269001 268991 400;401 30 YMDLYFER Unmodified 1135.5008 0.50083142 37 P00582 polA DNA polymerase I yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.498 36.895 2 0.0001748 16990 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 154.31 147.41 414440000 29340000 26753000 25282000 0 630270 0 31641000 32658000 35504000 1795600 1674700 1787500 25464000 31026000 27249000 18762000 12812000 12738000 34599000 35098000 26461000 1209900 950130 1006400 23583 37 22854 438055;438056;438057;438058;438059;438060;438061;438062;438063;438064;438065;438066;438067;438068;438069;438070;438071;438072;438073;438074;438075;438076 269002;269003;269004;269005;269006;269007;269008;269009;269010;269011;269012;269013 269013 12 YMELGPR Unmodified 864.41637 0.41637351 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.944 21.11 2 0.0010668 8587 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 137.44 122.22 942700000 14561000 9555300 13339000 2660400 2027000 2384000 136770000 124530000 131260000 0 31612000 32596000 89590000 83705000 90499000 7878100 4944200 5504600 45751000 43706000 47910000 6006300 8037100 7878800 23584 25 22855 438077;438078;438079;438080;438081;438082;438083;438084;438085;438086;438087;438088;438089;438090;438091;438092;438093;438094;438095;438096;438097;438098;438099 269014;269015;269016;269017;269018;269019;269020;269021;269022 269018 9 YMENSLK Unmodified 883.41095 0.41095378 1572 P45523 fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpA yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 13.418 14.306 2 0.0043665 4427 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 104.11 69.219 1670900000 0 0 0 0 0 0 189240000 171030000 171310000 0 0 0 188320000 190820000 159430000 0 0 0 203580000 190540000 206670000 0 0 0 23585 1572 22856 438100;438101;438102;438103;438104;438105;438106;438107;438108 269023;269024;269025 269023 3 YMHLFSGEVEDQPAVTDMSNAVDGDLQAR Unmodified 3194.4285 0.4284777 1331 P29217 yceH UPF0502 protein YceH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 47.184 45.794 3 2.2709E-31 21333 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 190.5 190.27 457120000 53465000 49239000 45961000 0 0 0 32531000 32327000 29965000 0 0 0 41280000 33951000 34158000 0 0 0 34096000 31902000 38242000 0 0 0 23586 1331 22857 438109;438110;438111;438112;438113;438114;438115;438116;438117;438118;438119;438120 269026;269027;269028;269029;269030;269031;269032;269033;269034;269035;269036;269037 269037 12 YMHSLER Unmodified 934.43309 0.43308621 1409 P33195 gcvP Glycine dehydrogenase (decarboxylating) yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.838 12.501 2 0.007582 2753 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 90.706 80.4 1116300000 77902000 65095000 52760000 2910800 3991700 4045900 104750000 100170000 103680000 6095000 5826200 4796200 90777000 85052000 69185000 1455400 0 0 104490000 110590000 107920000 5360600 4647600 4763900 23587 1409 22858 438121;438122;438123;438124;438125;438126;438127;438128;438129;438130;438131;438132;438133;438134;438135;438136;438137;438138;438139;438140;438141;438142 269038 269038 1 YMLVDGQGNFGSIDGDSAAAMR Unmodified 2274.0045 0.0045163905 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 2 1 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 2 2 44.45 42.879 2;3 9.8596E-54 21130 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 344.3 317.76 925710000 66402000 33588000 66969000 1844300 4120800 2213100 69105000 51404000 52881000 7108000 16694000 15636000 97537000 82660000 71489000 3389400 1865100 2643400 82333000 89976000 83627000 3838800 7410800 10980000 23588 882 22859 438143;438144;438145;438146;438147;438148;438149;438150;438151;438152;438153;438154;438155;438156;438157;438158;438159;438160;438161;438162;438163;438164;438165;438166;438167;438168;438169;438170;438171;438172;438173;438174;438175;438176;438177;438178;438179;438180;438181;438182;438183 269039;269040;269041;269042;269043;269044;269045;269046;269047;269048;269049;269050;269051;269052;269053;269054;269055;269056;269057;269058;269059;269060;269061;269062;269063;269064;269065;269066;269067 269052 24 YMMDNNYQYSK Unmodified 1455.5799 0.57988638 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.497 21.843 2 2.7827E-07 9442 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 160.36 160.36 928860000 62805000 55490000 57992000 0 0 0 75947000 84937000 81500000 9723700 8959000 9426400 82844000 81682000 76742000 0 0 0 77763000 80079000 82968000 0 0 0 23589 1716 22860 438184;438185;438186;438187;438188;438189;438190;438191;438192;438193;438194;438195;438196;438197;438198 269068;269069;269070;269071;269072;269073;269074;269075;269076;269077;269078;269079;269080;269081 269072 14 YMNDRGDTSIR Unmodified 1326.5986 0.59864799 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 1 By matching By MS/MS By matching By MS/MS 1 2 2 2 12.698 12.725 2;3 0.036793 2898 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 36.982 32.677 44470000 0 0 0 0 0 0 0 0 0 0 1080400 0 0 0 0 17318000 12147000 13925000 0 0 0 0 0 0 23590 222 22861 438199;438200;438201;438202;438203;438204;438205 269082;269083;269084 269084 1 YMPELEAYFHYR Unmodified 1617.7286 0.72859953 317 P0A784 orn Oligoribonuclease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 42.73 41.059 3 1.562E-08 19324 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 162.36 162.17 587930000 60022000 44585000 50011000 0 0 0 62409000 58568000 48088000 0 0 0 40513000 35037000 36456000 0 0 0 54725000 49738000 47776000 0 0 0 23591 317 22862 438206;438207;438208;438209;438210;438211;438212;438213;438214;438215;438216;438217 269085;269086;269087;269088;269089;269090;269091;269092;269093;269094;269095;269096 269094 12 YMPESMDIVHYVDK Unmodified 1725.7742 0.77422909 703 P0AC59 grxB Glutaredoxin-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 37.705 36.026 2;3 9.7196E-06 17327 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 96.135 94.513 3313500000 776310000 800730000 691290000 1213500 1342200 1238300 203230000 226290000 225150000 0 0 0 47722000 42079000 49711000 0 0 0 85469000 84068000 77679000 0 0 0 23592 703 22863 438218;438219;438220;438221;438222;438223;438224;438225;438226;438227;438228;438229;438230;438231;438232;438233;438234;438235;438236;438237;438238;438239;438240;438241;438242;438243;438244 269097;269098;269099;269100;269101;269102;269103;269104;269105;269106;269107;269108;269109;269110;269111;269112;269113;269114 269108 18 YMQGQVTADVSQMAEDQHLLAAHCDAK Unmodified 3016.3477 0.34772496 784 P0ADE8 ygfZ tRNA-modifying protein YgfZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 2 2 2 1 2 2 2 1 35.876 34.294 3;4 2.8829E-31 16878 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 195.24 195.15 3380200000 400650000 424740000 374370000 3397300 2208600 2337000 238490000 246950000 250470000 0 4764200 2942500 239720000 243420000 217590000 0 0 1798800 250060000 250170000 223480000 0 2598900 0 23593 784 22864 438245;438246;438247;438248;438249;438250;438251;438252;438253;438254;438255;438256;438257;438258;438259;438260;438261;438262;438263;438264;438265;438266;438267;438268;438269;438270;438271;438272;438273;438274;438275 269115;269116;269117;269118;269119;269120;269121;269122;269123;269124;269125;269126;269127;269128;269129;269130;269131;269132;269133;269134;269135;269136;269137;269138;269139;269140;269141 269116 27 YMSFDHVSPPEMLLR Unmodified 1820.859 0.85896177 736 P0ACM2 rspR HTH-type transcriptional repressor RspR yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 44.07 42.606 3 0.077988 20060 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 26.148 20.719 32195000 6311600 0 0 0 0 0 0 4633200 0 0 0 0 4167300 3954700 3742400 0 0 0 5825800 3559800 0 0 0 0 23594 736 22865 438276;438277;438278;438279;438280;438281;438282 269142 269142 1 YNADPDR Unmodified 849.3617 0.3616954 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.827 11.499 2 0.023497 2759 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 73.616 69.763 183880000 10394000 9026000 7555200 0 0 0 25621000 29311000 24488000 5308000 4212400 4674200 9251400 10957000 10116000 0 0 0 18911000 14059000 0 0 0 0 23595 122 22866 438283;438284;438285;438286;438287;438288;438289;438290;438291;438292;438293;438294;438295;438296 269143;269144;269145;269146;269147;269148;269149;269150 269145 8 YNADPDRLFESSGCAGK Unmodified 1885.8265 0.82647567 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 2 1 1 1 1 2 2 2 27.399 26.01 2;3 1.4436E-13 9841 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 162.94 157.48 195320000 0 0 0 5180800 5555900 8506700 2418600 2408000 0 47572000 41749000 38245000 0 0 0 3619700 4648000 3561400 0 0 0 11933000 9652900 10266000 23596 122 22867 438297;438298;438299;438300;438301;438302;438303;438304;438305;438306;438307;438308;438309;438310;438311;438312;438313;438314;438315;438316;438317 269151;269152;269153;269154;269155;269156;269157;269158;269159;269160;269161;269162;269163;269164 269155 14 YNANDNPTK Unmodified 1035.4621 0.46213773 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.707 11.481 2 4.3585E-06 2733 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.52 168.42 2272000000 192750000 178670000 177690000 68663000 71463000 62677000 276840000 260850000 251880000 0 0 0 99388000 93287000 88972000 0 0 0 115880000 97525000 102870000 44256000 45826000 42554000 23597 548 22868 438318;438319;438320;438321;438322;438323;438324;438325;438326;438327;438328;438329;438330;438331;438332;438333;438334;438335 269165;269166;269167;269168;269169;269170;269171 269165 5 YNAQLAK Unmodified 806.42865 0.42865276 1745 P69797 manX PTS system mannose-specific EIIAB component;Mannose-specific phosphotransferase enzyme IIA component;Mannose-specific phosphotransferase enzyme IIB component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.242 12.749 2 0.079684 2989 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 65.672 56.989 1020300000 17739000 23016000 0 11847000 0 0 110570000 90831000 85167000 104860000 83836000 78899000 0 0 0 102510000 62533000 76041000 48313000 52847000 55954000 15345000 0 0 23598 1745 22869 438336;438337;438338;438339;438340;438341;438342;438343;438344;438345;438346;438347;438348;438349;438350;438351 269172;269173;269174;269175;269176 269174 0 YNAVIDQMLEEGTAYK Unmodified 1843.8662 0.86621522 92 P04805 gltX Glutamate--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 47.666 46.223 2;3 1.5163E-30 22970 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 228.83 225.07 2948600000 209210000 198100000 179140000 0 0 0 246320000 258010000 229740000 1348300 0 0 281510000 284070000 259080000 0 0 0 257480000 276950000 267640000 0 0 0 23599 92 22870 438352;438353;438354;438355;438356;438357;438358;438359;438360;438361;438362;438363;438364;438365;438366;438367;438368;438369;438370;438371;438372;438373;438374;438375;438376 269177;269178;269179;269180;269181;269182;269183;269184;269185;269186;269187;269188;269189;269190;269191;269192;269193;269194;269195;269196;269197;269198;269199;269200 269177 24 YNDAGVDTK Unmodified 981.44034 0.44033966 1548 P40120 mdoD Glucans biosynthesis protein D yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 11.296 12.132 2 0.00089081 3186 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 98.582 91.169 112160000 12777000 10159000 7998600 0 0 0 9251100 9037200 0 0 0 0 9924800 9583900 9208100 0 0 0 8208500 15249000 10764000 0 0 0 23600 1548 22871 438377;438378;438379;438380;438381;438382;438383;438384;438385;438386;438387 269201;269202;269203;269204;269205 269202 3 YNDLRDFLTLLEQQGELKR Unmodified 2350.2281 0.22810904 582 P0AAB4 ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 53.496 52.092 4 9.6508E-06 21001 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 87.668 79.068 42040000 0 0 0 2992200 3965700 4171200 0 0 0 6426200 5709600 5018100 0 0 0 0 0 0 0 0 0 4753700 4849400 4154000 23601 582 22872 438388;438389;438390;438391;438392;438393;438394;438395;438396 269206;269207;269208;269209;269210 269206 5 YNDTPEK Unmodified 865.38176 0.38176214 489 P0A953 fabB 3-oxoacyl-[acyl-carrier-protein] synthase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 10.404 11.22 2 0.00085343 2536 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 143.11 121.34 2882100000 370360000 353530000 352100000 0 0 0 216830000 199680000 210290000 0 0 0 201410000 162720000 162590000 0 0 0 199720000 223820000 229020000 0 0 0 23602 489 22873 438397;438398;438399;438400;438401;438402;438403;438404;438405;438406;438407;438408 269211;269212;269213;269214;269215;269216;269217;269218;269219;269220;269221;269222 269212 12 YNEDVGELHR Unmodified 1230.5629 0.56291441 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 14.267 15.064 2;3 0.00061254 4954 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 109.44 104.07 983690000 70206000 82670000 75649000 169070 191340 237210 107070000 109200000 83958000 0 0 0 84183000 67318000 62429000 0 0 0 72449000 82958000 84996000 0 0 0 23603 1252 22874 438409;438410;438411;438412;438413;438414;438415;438416;438417;438418;438419;438420;438421;438422;438423;438424;438425;438426;438427;438428;438429;438430;438431;438432;438433;438434;438435 269223;269224;269225;269226;269227;269228 269225 6 YNEEHGITPQGLNK Unmodified 1598.7689 0.76888444 426 P0A8F8 uvrB UvrABC system protein B yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 1 2 2 2 15.985 16.792 2;3 1.2216E-05 5819 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 129.34 124.4 184630000 25750000 26132000 19962000 0 0 0 17332000 16610000 16393000 0 0 0 10477000 10423000 8049300 0 0 0 11744000 9498000 12254000 0 0 0 23604 426 22875 438436;438437;438438;438439;438440;438441;438442;438443;438444;438445;438446;438447;438448;438449;438450;438451;438452;438453;438454;438455;438456;438457;438458 269229;269230;269231;269232;269233;269234;269235;269236;269237;269238;269239;269240 269237 12 YNGILNQMGMTADQYAQALR Unmodified 2257.062 0.06197169 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 51.553 50.213 3 5.058E-07 19937 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 99.021 97.628 62823000 0 0 0 2809400 2824400 3337000 4084200 2136600 0 5536300 8070800 6377500 3648000 2883100 2960000 0 0 0 0 5015000 0 4900100 3909700 4331000 23605 819 22876 438459;438460;438461;438462;438463;438464;438465;438466;438467;438468;438469;438470;438471;438472;438473 269241 269241 1 YNGLPSMEILGQAAPGK Unmodified 1744.8818 0.8818057 1365 P31224 acrB Multidrug efflux pump subunit AcrB yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 44.575 43.094 2 2.3944E-06 17566 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 98.407 92.562 111710000 0 3815000 0 2293100 2016500 3257200 6205900 6721800 4457100 7576800 6824600 7515300 5996300 4570000 5559700 1875300 948130 1519300 9428800 8533000 7611700 5094000 3781000 6114100 23606 1365 22877 438474;438475;438476;438477;438478;438479;438480;438481;438482;438483;438484;438485;438486;438487;438488;438489;438490;438491;438492;438493;438494;438495 269242;269243;269244;269245;269246;269247;269248 269242 7 YNGTVNHYFLCDR Unmodified 1657.7307 0.73072479 1427 P33602 nuoG NADH-quinone oxidoreductase subunit G yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 2 2 25.392 24.27 2;3 9.9882E-06 8494 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 119.76 113.44 343810000 5612700 0 0 10893000 11505000 9850700 19554000 15954000 21884000 22488000 21292000 20324000 15247000 12611000 11152000 3927000 4799000 4556300 26718000 27072000 28246000 15042000 17200000 17878000 23607 1427 22878 438496;438497;438498;438499;438500;438501;438502;438503;438504;438505;438506;438507;438508;438509;438510;438511;438512;438513;438514;438515;438516;438517;438518;438519;438520;438521;438522;438523;438524;438525;438526;438527;438528;438529;438530;438531;438532;438533;438534;438535 269249;269250;269251;269252;269253;269254;269255;269256;269257;269258;269259;269260;269261;269262;269263 269258 13 YNHIPDTSSLSIR Unmodified 1501.7525 0.75250609 1695 P64604 mlaD Probable phospholipid ABC transporter-binding protein MlaD yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 25.917 24.737 2;3 4.0477E-06 9065 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 98.942 87.15 156920000 2361500 0 0 2743600 3452800 2641500 9133000 5225500 0 17149000 20380000 17495000 5490600 6508200 5362700 3399500 3971600 3288600 7809100 5877500 7214800 9605300 10210000 7601400 23608 1695 22879 438536;438537;438538;438539;438540;438541;438542;438543;438544;438545;438546;438547;438548;438549;438550;438551;438552;438553;438554;438555;438556;438557;438558;438559 269264;269265;269266;269267;269268;269269;269270;269271;269272;269273 269266 10 YNHSLAEEHTLR Unmodified 1468.7059 0.70589025 1943 P77791 maa Maltose O-acetyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By MS/MS By matching 3 3 2 3 3 3 3 3 3 3 3 3 12.065 12.899 2;3;4 2.4125E-05 3551 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 119.53 108.7 455560000 31429000 24093000 22184000 0 0 0 54235000 41441000 53042000 0 0 0 30759000 27901000 23696000 0 0 0 37104000 56714000 52958000 0 0 0 23609 1943 22880 438560;438561;438562;438563;438564;438565;438566;438567;438568;438569;438570;438571;438572;438573;438574;438575;438576;438577;438578;438579;438580;438581;438582;438583;438584;438585;438586;438587;438588;438589;438590;438591;438592;438593;438594 269274;269275;269276;269277 269274 3 YNIEPVITLSHFEMPLHLVQQYGSWTNR Unmodified 3371.6761 0.67611703 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 2 3 1 2 2 2 2 2 54.136 52.694 3;4 5.4525E-16 24787 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 140.65 138.91 1135300000 98791000 93983000 92688000 0 0 0 73010000 89062000 84736000 0 0 0 86835000 110770000 100500000 0 0 0 104410000 106560000 93931000 0 0 0 23610 1956 22881 438595;438596;438597;438598;438599;438600;438601;438602;438603;438604;438605;438606;438607;438608;438609;438610;438611;438612;438613;438614;438615;438616;438617;438618 269278;269279;269280;269281;269282;269283;269284;269285;269286;269287;269288;269289;269290 269290 13 YNIETFLAAVR Unmodified 1295.6874 0.68738664 1451 P36979 rlmN Dual-specificity RNA methyltransferase RlmN yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 52.354 51.017 2 2.5032E-06 18607 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 130.75 117.71 122100000 16739000 20720000 0 2906600 0 2013000 0 0 0 12241000 11647000 11315000 0 21577000 0 0 0 0 0 0 0 8234900 7280500 7427100 23611 1451 22882 438619;438620;438621;438622;438623;438624;438625;438626;438627;438628;438629;438630;438631 269291;269292;269293;269294;269295;269296;269297;269298;269299;269300;269301 269292 11 YNKVIDIWAAANDR Unmodified 1647.8369 0.83690442 458 P0A8T7 rpoC DNA-directed RNA polymerase subunit beta' yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 35.062 34.256 2;3 5.1579E-06 11423 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 106.58 101.69 563230000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 168000000 147550000 117690000 0 0 0 52889000 35045000 42054000 23612 458 22883 438632;438633;438634;438635;438636;438637;438638;438639;438640;438641 269302;269303;269304;269305;269306;269307;269308;269309;269310 269303 9 YNLAAMIAR Unmodified 1021.5379 0.53788563 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.916 35.3 2 7.2479E-05 17046 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 143.23 127.86 734630000 42607000 45853000 49047000 2466200 2028400 2665300 58106000 49884000 56055000 4366900 4889000 4130800 48999000 52829000 58940000 4771000 3472100 3291500 75820000 75460000 78171000 3048900 3608400 4123800 23613 583 22884 438642;438643;438644;438645;438646;438647;438648;438649;438650;438651;438652;438653;438654;438655;438656;438657;438658;438659;438660;438661;438662;438663;438664;438665 269311;269312;269313;269314;269315;269316;269317;269318;269319;269320;269321;269322;269323;269324;269325;269326;269327 269322 16 YNLHLGGNR Unmodified 1042.5308 0.53082642 1143 P17846 cysI Sulfite reductase [NADPH] hemoprotein beta-component yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.731 16.385 2 7.0051E-05 5287 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 143.85 126.01 737360000 71208000 76600000 62729000 0 886740 0 69022000 66203000 65445000 0 0 1272000 53655000 0 50709000 0 0 0 71625000 69215000 72584000 1699500 2075000 2429500 23614 1143 22885 438666;438667;438668;438669;438670;438671;438672;438673;438674;438675;438676;438677;438678;438679;438680;438681 269328;269329;269330;269331;269332;269333;269334;269335;269336 269335 8 YNLVPSDVISQIK Unmodified 1474.8031 0.80314468 1478 P37637 mdtF Multidrug resistance protein MdtF yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 45.464 43.717 2 0.0004341 17814 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.979 65.408 23255000 0 3051900 3021500 844510 1055600 1081800 0 0 0 3814500 6145500 4239300 0 0 0 0 0 0 0 0 0 0 0 0 23615 1478 22886 438682;438683;438684;438685;438686;438687;438688;438689 269337;269338;269339 269337 3 YNMELTLEEAVR Unmodified 1466.7075 0.70752973 190 P08622 dnaJ Chaperone protein DnaJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 43.844 41.805 2 3.2332E-06 16453 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 161.17 130.92 59900000 0 0 0 3759300 3623500 3413000 0 0 0 10580000 9668500 8244300 0 0 0 0 0 0 0 0 0 6969700 7270200 6370800 23616 190 22887 438690;438691;438692;438693;438694;438695;438696;438697;438698 269340;269341;269342;269343;269344;269345;269346;269347 269343 8 YNMPVIAEAVER Unmodified 1390.6915 0.69148574 676 P0ABS8 holE DNA polymerase III subunit theta yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38.788 37.157 2 3.0358E-05 17896 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 114.89 112.84 168290000 17674000 17328000 17735000 0 0 0 9622000 8553600 9190200 1148600 0 0 11306000 10241000 10652000 0 698790 0 17800000 16576000 19766000 0 0 0 23617 676 22888 438699;438700;438701;438702;438703;438704;438705;438706;438707;438708;438709;438710;438711;438712 269348;269349;269350;269351;269352;269353;269354 269352 7 YNPDALMTDLPK Unmodified 1376.6646 0.66460229 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 39.967 38.253 2 0.033295 18619 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 48.741 39.406 44182000 5716600 5492700 5333500 0 0 0 3100200 3174200 5010400 0 0 0 3170500 0 0 0 0 0 4132400 5962900 3088800 0 0 0 23618 438 22889 438713;438714;438715;438716;438717;438718;438719;438720;438721;438722 269355 269355 1 YNPDALMTDLPKPLR Unmodified 1742.9025 0.90254115 438 P0A8J8 rhlB ATP-dependent RNA helicase RhlB yes yes 0 0 1 By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.209 39.514 3 0.0025239 19124 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 61.732 60.584 170770000 25081000 0 22982000 2473500 2252800 2965700 8556700 10476000 10455000 0 0 0 8685100 8883100 9428600 0 0 0 20200000 20530000 17802000 0 0 0 23619 438 22890 438723;438724;438725;438726;438727;438728;438729;438730;438731;438732;438733;438734;438735;438736 269356;269357;269358;269359;269360;269361;269362;269363 269358 7 YNPDVDDAPR Unmodified 1160.5098 0.5098162 150 P07014 sdhB Succinate dehydrogenase iron-sulfur subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.719 16.303 2 3.9893E-06 5637 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 156.75 156.75 976130000 48023000 52616000 49647000 22662000 20901000 18376000 38039000 49316000 43566000 20406000 21400000 19610000 59624000 49816000 51186000 7598300 4316900 0 99982000 102840000 105150000 32632000 30003000 28413000 23620 150 22891 438737;438738;438739;438740;438741;438742;438743;438744;438745;438746;438747;438748;438749;438750;438751;438752;438753;438754;438755;438756;438757;438758;438759;438760 269364;269365;269366;269367;269368;269369;269370;269371;269372;269373;269374;269375;269376;269377;269378;269379;269380;269381;269382;269383;269384;269385;269386;269387 269371 24 YNPEVDTAPHSAFYEVPYDATTSLLDALGYIK Unmodified 3559.7035 0.7034968 700 P0AC47 frdB Fumarate reductase iron-sulfur subunit yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.51 54.033 3 4.1831E-10 26650 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 100.42 99.695 552350000 6699200 5253500 6318400 0 0 0 70980000 56641000 58137000 22131000 24094000 22382000 58413000 65839000 48943000 0 0 0 34724000 33466000 31702000 0 3973200 2654400 23621 700 22892 438761;438762;438763;438764;438765;438766;438767;438768;438769;438770;438771;438772;438773;438774;438775;438776;438777 269388;269389;269390;269391;269392;269393;269394;269395;269396;269397 269393 10 YNPFADLK Unmodified 966.48108 0.48108226 606 P0AAQ2 yajD Uncharacterized protein YajD yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 34.307 32.882 2 0.1442 14933 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 49.833 46.157 193290000 17025000 18639000 17848000 0 0 0 27486000 23049000 0 0 0 0 12525000 11611000 13015000 0 0 0 18326000 15095000 18670000 0 0 0 23622 606 22893 438778;438779;438780;438781;438782;438783;438784;438785;438786;438787;438788 269398 269398 0 YNPPNGGPADTNVTK Unmodified 1543.7267 0.72668527 1450 P36938 pgm Phosphoglucomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 15.817 16.648 2 1.2393E-06 5518 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 115.33 101.74 175510000 0 15915000 14763000 0 0 0 13682000 21309000 16616000 0 0 0 18179000 15528000 12428000 0 0 0 16656000 13902000 16528000 0 0 0 23623 1450 22894 438789;438790;438791;438792;438793;438794;438795;438796;438797;438798;438799;438800 269399;269400;269401;269402;269403;269404;269405;269406;269407;269408;269409;269410 269408 12 YNREEDIDVTAK Unmodified 1451.6892 0.68923713 1448 P36928 yegD Uncharacterized chaperone protein YegD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 14.79 14.868 2;3 2.0206E-11 3807 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 185.18 139.02 199030000 0 0 0 0 0 0 0 0 0 11041000 11450000 10394000 0 0 0 22800000 21043000 19556000 0 0 0 36489000 31437000 34823000 23624 1448 22895 438801;438802;438803;438804;438805;438806;438807;438808;438809;438810;438811;438812;438813;438814;438815;438816;438817;438818 269411;269412;269413;269414;269415;269416;269417;269418;269419;269420;269421;269422;269423;269424;269425 269411 15 YNSDALR Unmodified 837.39808 0.39808091 328 P0A7B5 proB Glutamate 5-kinase yes yes 0 0 0 By MS/MS By MS/MS 1 1 12.524 13.176 2 0.015147 3822 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 77.984 40.891 42957000 42957000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23625 328 22896 438819;438820 269426;269427 269427 2 YNSKLPIVVYTPDNVDVK Unmodified 2063.0939 0.09390697 1212 P23827 eco Ecotin yes yes 0 0 1 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 37.828 36.215 3 0.0049013 12733 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 33.142 32.323 9038700 0 0 0 2699400 1624800 1846200 0 0 0 1879300 0 0 0 0 0 988940 0 0 0 0 0 0 0 0 23626 1212 22897 438821;438822;438823;438824;438825 269428 269428 1 YNTLGGVCLNVGCIPSK Unmodified 1850.9019 0.90188922 542 P0A9P0 lpdA Dihydrolipoyl dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 3 2 2 2 3 2 2 2 2 3 2 2 2 2 2 4 2 2 3 3 41.427 39.806 2;3 3.2052E-11 13985 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 194.3 189.89 19187000000 945960000 826560000 742330000 1973600000 1873200000 2104700000 712890000 696030000 663880000 142220000 125970000 118050000 470300000 458920000 426420000 49462000 48409000 56681000 851690000 773580000 799460000 1393000000 1458100000 1475800000 23627 542 22898 438826;438827;438828;438829;438830;438831;438832;438833;438834;438835;438836;438837;438838;438839;438840;438841;438842;438843;438844;438845;438846;438847;438848;438849;438850;438851;438852;438853;438854;438855;438856;438857;438858;438859;438860;438861;438862;438863;438864;438865;438866;438867;438868;438869;438870;438871;438872;438873;438874;438875;438876;438877;438878;438879;438880;438881;438882;438883 269429;269430;269431;269432;269433;269434;269435;269436;269437;269438;269439;269440;269441;269442;269443;269444;269445;269446;269447;269448;269449;269450;269451;269452;269453;269454;269455;269456;269457;269458;269459;269460;269461;269462;269463;269464;269465;269466;269467;269468;269469;269470;269471;269472;269473;269474;269475;269476;269477;269478;269479;269480;269481;269482;269483;269484;269485;269486;269487;269488;269489;269490;269491;269492;269493;269494;269495;269496;269497;269498;269499 269435 69 YNTNGGIVTGDGMGMALSHGVPLR Unmodified 2416.1627 0.16274837 25 P00363 frdA Fumarate reductase flavoprotein subunit yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.871 38.175 3 7.49E-22 19034 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 126.31 118.62 407840000 9266900 6716700 0 1181400 1418800 0 47137000 41992000 43123000 19275000 21657000 26301000 36455000 32522000 31459000 0 4465800 2786300 24149000 23279000 20936000 4513000 4244900 4960400 23628 25 22899 438884;438885;438886;438887;438888;438889;438890;438891;438892;438893;438894;438895;438896;438897;438898;438899;438900;438901;438902;438903;438904 269500;269501;269502;269503;269504;269505;269506;269507;269508;269509;269510;269511;269512 269504 13 YNTPAQAADAMR Unmodified 1307.5928 0.59283433 314 P0A761 nanE Putative N-acetylmannosamine-6-phosphate 2-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.216 20.606 2 2.8159E-06 7671 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 139.43 136.18 170560000 24993000 24966000 22628000 0 0 0 10508000 7971300 8458200 0 0 0 14768000 10718000 11502000 0 0 0 11620000 10029000 12396000 0 0 0 23629 314 22900 438905;438906;438907;438908;438909;438910;438911;438912;438913;438914;438915;438916 269513;269514;269515;269516;269517;269518;269519;269520;269521;269522;269523;269524 269524 12 YNVELIR Unmodified 905.49707 0.49706667 1198 P22524 mukE Chromosome partition protein MukE yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 27.064 25.998 2 0.0010521 11757 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 137.83 106.53 315640000 38203000 35429000 37193000 897730 886510 1269800 0 0 0 0 0 0 34354000 32396000 30245000 0 0 0 0 52839000 51931000 0 0 0 23630 1198 22901 438917;438918;438919;438920;438921;438922;438923;438924;438925;438926;438927 269525;269526;269527;269528;269529 269526 5 YNYLINQLNIK Unmodified 1394.7558 0.75580056 73 P02930 tolC Outer membrane protein TolC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 41.093 39.503 2 0.0014031 18524 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 96.311 88.939 184790000 5031700 4005600 4719700 2311500 2680600 2780300 8121200 6696900 6525700 10807000 9010500 11094000 11108000 9169500 9690800 7583400 6616500 7508400 16864000 14157000 14670000 7514300 0 6126300 23631 73 22902 438928;438929;438930;438931;438932;438933;438934;438935;438936;438937;438938;438939;438940;438941;438942;438943;438944;438945;438946;438947;438948;438949;438950 269530;269531;269532 269532 0 YPADVPTEINPDR Unmodified 1485.71 0.70997257 1734 P69451 fadD Long-chain-fatty-acid--CoA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.348 28.064 2 1.3004E-09 12895 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 177.78 162.51 118040000 20750000 19898000 17354000 476600 0 336460 6162200 7836700 7457100 0 0 0 4865000 5801500 6270900 0 0 0 7976400 5787500 7072000 0 0 0 23632 1734 22903 438951;438952;438953;438954;438955;438956;438957;438958;438959;438960;438961;438962;438963;438964 269533;269534;269535 269535 3 YPAQLSGGQK Unmodified 1047.5349 0.53490874 1121 P16676 cysA Sulfate/thiosulfate import ATP-binding protein CysA yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 13.351 14.234 2 0.1148 4389 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 42.075 37.938 32775000 0 0 0 0 0 0 4006800 0 6034900 0 0 0 0 3276700 2292500 0 0 0 6218300 4584800 6361400 0 0 0 23633 1121 22904 438965;438966;438967;438968;438969;438970;438971 269536 269536 0 YPDHLIIGSDQVCVLDGEITGKPLTEENAR Unmodified 3338.6453 0.64527041 304 P0A729 yceF Maf-like protein YceF yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 2 2 44.417 42.922 3;4 7.6537E-12 21346 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 128.85 126.9 821650000 115370000 104360000 115030000 0 0 0 73866000 71708000 66976000 0 0 0 46687000 47943000 42521000 0 0 0 43786000 53524000 39870000 0 0 0 23634 304 22905 438972;438973;438974;438975;438976;438977;438978;438979;438980;438981;438982;438983;438984;438985;438986;438987;438988;438989;438990;438991;438992;438993 269537;269538;269539;269540;269541;269542;269543;269544;269545;269546;269547;269548;269549;269550 269537 14 YPDLDAK Unmodified 820.39668 0.39668393 64 P00963 asnA Aspartate--ammonia ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 1 1 1 2 2 2 2 2 2 17.604 18.202 1;2 0.0023005 6705 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 114.72 86.192 1448000000 120320000 115040000 90456000 0 0 2594100 287410000 284130000 311360000 6090900 5373600 5145400 33838000 35594000 35072000 0 0 0 33830000 42329000 39430000 0 0 0 23635 64 22906 438994;438995;438996;438997;438998;438999;439000;439001;439002;439003;439004;439005;439006;439007;439008;439009;439010;439011;439012;439013;439014;439015;439016;439017;439018;439019;439020;439021 269551;269552;269553;269554;269555;269556;269557;269558;269559;269560;269561;269562;269563;269564;269565;269566 269556 15 YPDLQIIGGNVATAAGAR Unmodified 1785.9373 0.93734675 788 P0ADG7 guaB Inosine-5'-monophosphate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 2 1 43.859 42.271 2;3 9.2219E-37 20871 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 240.92 236.58 1859800000 191580000 141200000 133910000 0 0 0 164720000 164490000 135240000 0 0 0 138860000 116530000 107670000 0 0 0 217860000 200520000 147170000 0 0 0 23636 788 22907 439022;439023;439024;439025;439026;439027;439028;439029;439030;439031;439032;439033;439034;439035;439036;439037;439038 269567;269568;269569;269570;269571;269572;269573;269574;269575;269576;269577;269578;269579;269580;269581 269569 14 YPDVQFHQTR Unmodified 1289.6153 0.61528433 346 P0A7I4 prfC Peptide chain release factor 3 yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 2 1 1 2 1 1 17.905 18.49 2;3 4.9536E-05 6816 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136.21 131.24 600600000 31612000 31588000 7821500 0 0 0 0 158990000 0 0 0 0 0 0 105710000 0 0 0 160160000 49866000 53675000 726760 456160 0 23637 346 22908 439039;439040;439041;439042;439043;439044;439045;439046;439047;439048;439049;439050;439051;439052 269582;269583;269584;269585;269586;269587;269588;269589 269584 3 YPETAALVADWTDEQIWALNR Unmodified 2461.1914 0.19138918 939 P0AFG8 aceE Pyruvate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 6 4 3 3 4 3 3 3 2 2 3 3 1 1 1 4 3 3 5 5 3 55.27 53.881 2;3;4 6.3135E-63 26411 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 356.59 344.2 19551000000 478880000 421630000 349380000 2247700000 2109100000 2134200000 488190000 491710000 405940000 181780000 150800000 172080000 354810000 371080000 329880000 63994000 85098000 69356000 601670000 600550000 591460000 2313000000 2304900000 2233700000 23638 939 22909 439053;439054;439055;439056;439057;439058;439059;439060;439061;439062;439063;439064;439065;439066;439067;439068;439069;439070;439071;439072;439073;439074;439075;439076;439077;439078;439079;439080;439081;439082;439083;439084;439085;439086;439087;439088;439089;439090;439091;439092;439093;439094;439095;439096;439097;439098;439099;439100;439101;439102;439103;439104;439105;439106;439107;439108;439109;439110;439111;439112;439113;439114;439115;439116;439117;439118;439119;439120;439121;439122;439123;439124;439125;439126 269590;269591;269592;269593;269594;269595;269596;269597;269598;269599;269600;269601;269602;269603;269604;269605;269606;269607;269608;269609;269610;269611;269612;269613;269614;269615;269616;269617;269618;269619;269620;269621;269622;269623;269624;269625;269626;269627;269628;269629;269630;269631;269632;269633;269634;269635;269636;269637;269638;269639;269640;269641 269613 51 YPEVNASIDGDDVVYHNYFDVSMAVSTPR Unmodified 3259.4768 0.4768081 938 P0AFG6 sucB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 51.332 50.085 3 4.1979E-20 24369 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 136 130.28 126260000 9926000 12332000 11042000 0 0 0 4553100 7219500 6351500 0 0 0 14450000 8868100 6474900 0 0 0 0 21339000 23701000 0 0 0 23639 938 22910 439127;439128;439129;439130;439131;439132;439133;439134;439135;439136;439137 269642;269643 269642 1 YPEYNFYR Unmodified 1150.5084 0.50835964 930 P0AFD6 nuoI NADH-quinone oxidoreductase subunit I yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.84 28.568 2 2.3987E-06 13287 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 185.99 185.99 513700000 22988000 18540000 19550000 0 0 0 45274000 0 49474000 18123000 14335000 13918000 34153000 35666000 33778000 3896800 3412800 3926100 64048000 58326000 64434000 0 9858300 0 23640 930 22911 439138;439139;439140;439141;439142;439143;439144;439145;439146;439147;439148;439149;439150;439151;439152;439153;439154;439155 269644;269645;269646;269647;269648;269649;269650;269651;269652;269653;269654;269655 269651 12 YPFADGGFVLFCHYR Unmodified 1847.8454 0.84536062 1433 P33920 yejK Nucleoid-associated protein YejK yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 2 2 48.752 47.25 2;3 3.2617E-15 18720 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 199.11 183.22 166200000 0 0 0 0 0 0 0 0 0 1541300 0 2268600 0 0 923450 0 0 0 2429400 3001800 0 50316000 52742000 52978000 23641 1433 22912 439156;439157;439158;439159;439160;439161;439162;439163;439164;439165;439166 269656;269657;269658;269659;269660;269661 269657 6 YPFLTESLAR Unmodified 1195.6237 0.62372375 1088 P13035 glpD Aerobic glycerol-3-phosphate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.996 37.5 2 0.00017184 15214 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 147.29 138.34 407790000 4443600 3354800 5277300 0 0 1002900 0 0 0 116870000 103360000 92745000 0 0 0 11193000 7603100 8665700 0 0 0 16381000 19768000 17132000 23642 1088 22913 439167;439168;439169;439170;439171;439172;439173;439174;439175;439176;439177;439178;439179 269662;269663;269664;269665;269666;269667;269668;269669;269670;269671 269664 10 YPGCLFIAACTFYPDPGHPIHQLADQQK Unmodified 3243.527 0.52700995 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 2 2 2 1 2 2 1 1 2 1 2 1 45.986 44.516 3;4 6.2708E-11 21857 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 118.05 116.07 539220000 112780000 94247000 92821000 0 0 0 28063000 26013000 36770000 0 0 0 20110000 21237000 22223000 0 0 0 23228000 35788000 25945000 0 0 0 23643 748 22914 439180;439181;439182;439183;439184;439185;439186;439187;439188;439189;439190;439191;439192;439193;439194;439195;439196;439197;439198 269672;269673 269673 2 YPGHDPR Unmodified 840.38785 0.38785057 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 10.319 11.135 2 0.0072259 2497 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 92.191 29.212 2111200000 365260000 324110000 353620000 0 0 0 74607000 142280000 0 0 0 0 134680000 110460000 111950000 0 0 0 191160000 162540000 140530000 0 0 0 23644 1652 22915 439199;439200;439201;439202;439203;439204;439205;439206;439207;439208;439209 269674;269675;269676;269677;269678;269679;269680;269681;269682;269683;269684 269681 11 YPGLHTHR Unmodified 979.4988 0.49879801 175 P08179 purN Phosphoribosylglycinamide formyltransferase yes yes 0 0 0 By MS/MS 1 11.141 11.889 2 0.10658 2973 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 51.662 36.223 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23645 175 22916 439210 269685 269685 1 YPGVLEYMER Unmodified 1255.5907 0.59070906 37 P00582 polA DNA polymerase I yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.286 37.919 2 0.00023669 13139 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 117.89 115.21 251660000 23080000 23346000 20610000 0 0 0 20609000 19418000 19150000 0 0 0 14566000 15191000 16919000 7988500 6004100 5028000 20213000 18979000 19988000 571380 0 0 23646 37 22917 439211;439212;439213;439214;439215;439216;439217;439218;439219;439220;439221;439222;439223;439224;439225;439226 269686;269687;269688;269689;269690;269691;269692;269693;269694;269695;269696;269697;269698 269688 13 YPHEFSGGQCQR Unmodified 1464.6204 0.62044606 1935 P77737 oppF Oligopeptide transport ATP-binding protein OppF yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 12.559 13.244 2;3 1.8955E-05 2810 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 110.08 110.08 560810000 98785000 65259000 78623000 29528000 27893000 26473000 23731000 22654000 20366000 19679000 18741000 22287000 15138000 7165200 4817000 0 0 2882000 25355000 22360000 17676000 4773800 3881100 2748500 23647 1935 22918 439227;439228;439229;439230;439231;439232;439233;439234;439235;439236;439237;439238;439239;439240;439241;439242;439243;439244;439245;439246;439247;439248;439249;439250;439251;439252;439253;439254;439255;439256;439257;439258;439259;439260;439261;439262;439263;439264;439265 269699;269700;269701;269702;269703;269704;269705;269706;269707;269708;269709 269705 10 YPIVRPQDVQVEEQR Unmodified 1854.9588 0.95881047 1183 P21513 rne Ribonuclease E yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 2 2 2 2 2 1 25.897 24.82 2;3 2.0962E-08 11232 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 176.78 163.11 461110000 6591400 6464400 6098700 0 0 0 37960000 43923000 37128000 0 0 0 46067000 46778000 41881000 0 0 0 59918000 65590000 61314000 0 0 1393200 23648 1183 22919 439266;439267;439268;439269;439270;439271;439272;439273;439274;439275;439276;439277;439278;439279;439280;439281;439282;439283;439284;439285;439286 269710;269711;269712;269713;269714;269715;269716;269717;269718 269713 9 YPLADGAK Unmodified 833.42832 0.42831841 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 14.581 15.245 2 0.0034662 4685 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 91.9 35.778 1486100000 123490000 102440000 110390000 797440 799840 742990 131450000 131910000 136190000 1582300 1472400 0 116580000 114180000 92713000 0 0 0 153550000 134680000 131530000 0 683260 906170 23649 158 22920 439287;439288;439289;439290;439291;439292;439293;439294;439295;439296;439297;439298;439299;439300;439301;439302;439303;439304;439305 269719;269720;269721;269722;269723;269724 269724 6 YPLADYALTPDMAIVDANLVMDMPK Unmodified 2766.3318 0.33184711 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 2 2 2 1 2 2 1 2 2 2 55.74 54.271 2;3 3.2984E-50 26935 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 239.86 232.33 1867900000 143270000 127310000 128640000 17586000 0 16657000 246990000 193150000 218590000 0 5107400 0 143280000 163530000 88869000 0 0 0 111210000 132290000 131470000 0 0 0 23650 548 22921 439306;439307;439308;439309;439310;439311;439312;439313;439314;439315;439316;439317;439318;439319;439320;439321;439322;439323;439324;439325;439326;439327;439328 269725;269726;269727;269728;269729;269730;269731;269732;269733;269734;269735;269736;269737;269738 269729 14 YPLEAVSIMATICER Unmodified 1751.8586 0.85862742 771 P0AD61 pykF Pyruvate kinase I yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.396 51.148 2 1.1186E-20 23929 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 221.55 209.28 180780000 14251000 11033000 8846400 0 0 0 16585000 17769000 16989000 0 0 0 13594000 14073000 15814000 0 0 0 20108000 16235000 15487000 0 0 0 23651 771 22922 439329;439330;439331;439332;439333;439334;439335;439336;439337;439338;439339;439340 269739;269740;269741;269742;269743 269742 5 YPLISELK Unmodified 961.54843 0.54843354 548 P0A9Q7 adhE Aldehyde-alcohol dehydrogenase;Alcohol dehydrogenase;Acetaldehyde dehydrogenase [acetylating];Pyruvate-formate-lyase deactivase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.039 32.573 2 0.0015887 15817 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 107.59 94.605 2893000000 223260000 244530000 215050000 45072000 43417000 44929000 380530000 358470000 329960000 49477000 45893000 42352000 124810000 125660000 116110000 5142800 3384000 4627700 116230000 116930000 112310000 51010000 45785000 48090000 23652 548 22923 439341;439342;439343;439344;439345;439346;439347;439348;439349;439350;439351;439352;439353;439354;439355;439356;439357;439358;439359;439360;439361;439362;439363;439364 269744;269745;269746;269747;269748;269749;269750;269751;269752;269753;269754;269755;269756;269757;269758;269759;269760;269761 269750 18 YPNDQVGR Unmodified 947.44609 0.44609374 722 P0ACD8 hyaB Hydrogenase-1 large chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 12.147 12.602 2 0.036356 2901 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 62.659 54.719 95509000 0 0 0 0 0 0 27095000 30425000 29316000 2968200 2889000 2815700 0 0 0 0 0 0 0 0 0 0 0 0 23653 722 22924 439365;439366;439367;439368;439369;439370 269762 269762 1 YPNVDGVVGLNHLYGCGVAINAPAAVVPIR Unmodified 3104.623 0.62295925 1543 P39829 garD D-galactarate dehydratase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 51.244 49.999 3 1.7278E-23 23529 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 172.32 170.03 163660000 0 27149000 0 0 0 0 0 28486000 40437000 0 0 0 20659000 13177000 0 0 0 0 0 20613000 13135000 0 0 0 23654 1543 22925 439371;439372;439373;439374;439375;439376;439377 269763;269764;269765;269766 269765 4 YPPEGIR Unmodified 830.42865 0.42865276 1208 P23522 garL 5-keto-4-deoxy-D-glucarate aldolase yes yes 0 0 0 By MS/MS By MS/MS 1 1 15.062 15.996 2 0.0024906 5445 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 103.29 72.282 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23655 1208 22926 439378;439379 269767;269768 269767 2 YPQAIIDVMAPAWCRPLLSR Unmodified 2356.2184 0.21841275 1488 P37692 rfaF ADP-heptose--LPS heptosyltransferase 2 yes yes 0 0 1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 51.927 51.013 3 5.9909E-05 20377 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 77.871 76.817 41936000 0 0 0 0 0 0 0 0 0 0 0 8855500 0 0 0 4048700 4035200 0 0 0 0 8867300 7542000 8587200 23656 1488 22927 439380;439381;439382;439383;439384;439385 269769;269770;269771 269771 3 YPQATFTSTSVK Unmodified 1328.6612 0.66123147 470 P0A8X2 yceI Protein YceI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 22.857 22.328 2 2.7179E-06 9503 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 140.07 131.21 405310000 49511000 51428000 53447000 0 0 0 25467000 23873000 27089000 0 0 0 18068000 16230000 17227000 0 0 0 43538000 40639000 38792000 0 0 0 23657 470 22928 439386;439387;439388;439389;439390;439391;439392;439393;439394;439395;439396;439397 269772;269773;269774;269775;269776;269777;269778 269773 7 YPQLTIR Unmodified 889.50215 0.50215205 212;1717 P09373;P68066 pflB;grcA Formate acetyltransferase 1;Autonomous glycyl radical cofactor no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.589 25.519 2 0.00037797 11531 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 155.73 117.53 27290000000 997110000 928470000 827650000 0 0 0 4653900000 4226000000 4432800000 20676000 26952000 23557000 2288300000 2206900000 2154100000 7806400 6382100 5003400 1501700000 1512200000 1460700000 4969600 0 4903800 23658 212;1717 22929 439398;439399;439400;439401;439402;439403;439404;439405;439406;439407;439408;439409;439410;439411;439412;439413;439414;439415;439416;439417 269779;269780;269781;269782;269783;269784;269785;269786;269787;269788;269789;269790;269791;269792;269793;269794;269795;269796;269797;269798;269799;269800;269801;269802;269803;269804;269805;269806 269790 27 YPSEPQENLLYFMEK Unmodified 1886.8761 0.87605162 1327 P29013 ycgB Uncharacterized protein YcgB yes yes 0 0 0 By matching By MS/MS 1 1 50.876 49.596 2 0.08406 24170 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 39.179 32.142 7268900 2880900 4388000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23659 1327 22930 439418;439419 269807 269807 1 YPSKSTLIHQGEK Unmodified 1486.778 0.77799256 734 P0ACJ8 crp cAMP-activated global transcriptional regulator CRP yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 37.17 35.402 3 0.14675 13898 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 15.941 10.763 141060000 22101000 22111000 15575000 0 0 4617200 0 0 0 5804500 5498300 4536100 13765000 10135000 1859300 0 0 0 10880000 12676000 11502000 0 0 0 23660 734 22931 439420;439421;439422;439423;439424;439425;439426;439427;439428;439429;439430;439431;439432 269808 269808 1 YPSLELVEYK Unmodified 1239.6387 0.63870511 1724 P68739 nfi Endonuclease V yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 39.096 37.619 2 0.00099054 18070 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 84.17 64.029 40982000 11600000 11814000 12208000 0 0 0 0 0 0 0 793950 0 0 0 0 0 3057100 0 0 0 0 1509300 0 0 23661 1724 22932 439433;439434;439435;439436;439437;439438 269809 269809 1 YPSYNTIVGSGENGCILHYTENECEMR Unmodified 3192.3587 0.35868358 1100 P15034 pepP Xaa-Pro aminopeptidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.023 38.357 3 5.9344E-41 18618 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 204.53 204.53 196960000 29765000 30568000 23347000 0 0 0 14781000 11900000 15754000 0 0 0 9823900 12957000 8347700 0 0 0 11524000 16095000 12093000 0 0 0 23662 1100 22933 439439;439440;439441;439442;439443;439444;439445;439446;439447;439448;439449;439450 269810;269811;269812;269813;269814;269815;269816;269817;269818 269814 9 YPTLALVDSTQELR Unmodified 1604.841 0.84098675 1909 P77488 dxs 1-deoxy-D-xylulose-5-phosphate synthase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 43.724 41.913 2 3.6218E-08 16512 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 147.91 130.1 109380000 17343000 0 0 3356700 2805000 3430200 14033000 14784000 15288000 7576800 7675400 5936900 0 0 0 0 0 1916600 0 0 0 5128900 5490000 4611900 23663 1909 22934 439451;439452;439453;439454;439455;439456;439457;439458;439459;439460;439461;439462;439463;439464 269819;269820;269821;269822;269823;269824;269825;269826;269827;269828;269829 269826 8 YPTQSPMPLTVACASPELASGK Unmodified 2304.113 0.11300421 1183 P21513 rne Ribonuclease E yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 41.799 40.146 2 4.3431E-28 19651 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 214.5 207.2 101480000 12465000 13697000 10760000 0 0 0 0 5999600 5186100 0 0 0 7795200 6896600 5675600 0 0 0 11988000 8953500 12059000 0 0 0 23664 1183 22935 439465;439466;439467;439468;439469;439470;439471;439472;439473;439474;439475 269830;269831;269832;269833;269834 269830 5 YPVDAQLK Unmodified 932.49673 0.49673232 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 19.599 19.9 2 0.0078415 7648 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 82.671 70.95 950970000 38458000 40100000 39255000 20131000 19309000 19612000 34120000 33471000 31590000 32637000 22398000 26080000 34185000 37584000 42199000 0 0 3566100 117150000 112010000 109560000 42768000 45289000 49503000 23665 215 22936 439476;439477;439478;439479;439480;439481;439482;439483;439484;439485;439486;439487;439488;439489;439490;439491;439492;439493;439494;439495;439496;439497 269835;269836;269837;269838;269839;269840;269841;269842;269843;269844;269845;269846;269847;269848 269844 14 YPVDVYTGK Unmodified 1040.5179 0.51786169 1390 P32157 yiiM Protein YiiM yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 23.832 22.948 2 9.7451E-05 10237 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 136.8 128.57 252630000 54468000 0 46843000 0 0 0 38586000 39533000 36750000 0 0 0 0 0 0 0 0 0 17079000 19373000 0 0 0 0 23666 1390 22937 439498;439499;439500;439501;439502;439503;439504 269849;269850;269851 269850 3 YPVTAVGSVAEDNLR Unmodified 1589.8049 0.80493559 115 P05706 srlB Glucitol/sorbitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32.976 31.337 2 4.9726E-27 14164 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 234.61 226.61 373600000 7175400 9068400 5422200 0 0 0 54407000 46779000 45316000 3312500 3053000 3447900 34615000 31680000 31436000 0 0 0 31590000 32239000 32738000 0 1319700 0 23667 115 22938 439505;439506;439507;439508;439509;439510;439511;439512;439513;439514;439515;439516;439517;439518;439519;439520 269852;269853;269854;269855;269856;269857;269858;269859;269860;269861 269861 9 YPVTPGVATHVTDSR Unmodified 1598.8053 0.80526994 44 P00887 aroH Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 2 2 2 2 2 2 2 2 2 20.503 20.922 2;3 1.6211E-08 8115 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 169.23 159 1037000000 176880000 163670000 133000000 897030 1089800 0 64360000 63735000 63705000 0 0 0 54850000 58929000 44350000 0 0 0 60131000 78526000 72866000 0 0 0 23668 44 22939 439521;439522;439523;439524;439525;439526;439527;439528;439529;439530;439531;439532;439533;439534;439535;439536;439537;439538;439539;439540;439541;439542;439543;439544;439545;439546 269862;269863;269864;269865;269866;269867;269868;269869;269870;269871;269872;269873;269874;269875;269876;269877;269878;269879 269873 14 YPVVALITEWR Unmodified 1345.7394 0.73942221 337 P0A7E5 pyrG CTP synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 52.486 51.239 2;3 2.1877E-07 25263 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 191.85 187.43 2160200000 131480000 117020000 122680000 0 0 0 174200000 157050000 161050000 0 0 0 172640000 170210000 177880000 0 0 0 262590000 262130000 251290000 0 0 0 23669 337 22940 439547;439548;439549;439550;439551;439552;439553;439554;439555;439556;439557;439558;439559;439560;439561;439562;439563;439564;439565;439566;439567;439568;439569;439570 269880;269881;269882;269883;269884;269885;269886;269887;269888;269889;269890;269891;269892;269893;269894;269895;269896;269897 269881 18 YQAFTQADLTNLR Unmodified 1539.7682 0.76815616 1716 P67910 hldD ADP-L-glycero-D-manno-heptose-6-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 2 2 2 2 2 1 2 2 2 1 1 1 37.223 35.446 2;3 2.0849E-17 13951 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 210.27 206.42 2764400000 236210000 195760000 181340000 1836000 2276300 1898700 266390000 254100000 238940000 37820000 34976000 38500000 186300000 194650000 183980000 1737200 0 0 237280000 227720000 233380000 2928700 3725900 2676300 23670 1716 22941 439571;439572;439573;439574;439575;439576;439577;439578;439579;439580;439581;439582;439583;439584;439585;439586;439587;439588;439589;439590;439591;439592;439593;439594;439595;439596;439597;439598;439599;439600;439601;439602;439603;439604;439605;439606 269898;269899;269900;269901;269902;269903;269904;269905;269906;269907;269908;269909;269910;269911;269912;269913;269914;269915 269899 18 YQALSECVK Unmodified 1096.5223 0.52229515 748 P0ACU7 yjdC HTH-type transcriptional regulator YjdC yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.049 17.609 2 0.00020183 6424 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 126.41 99.81 465860000 73127000 67319000 69698000 1410200 0 0 39299000 41727000 37049000 2962700 2745100 2339700 18357000 15524000 13411000 0 0 0 32346000 23428000 23159000 1957000 0 0 23671 748 22942 439607;439608;439609;439610;439611;439612;439613;439614;439615;439616;439617;439618;439619;439620;439621;439622;439623 269916;269917;269918;269919;269920;269921;269922;269923;269924;269925;269926;269927;269928 269917 13 YQAVHSDEVEDILALDIALR Unmodified 2269.159 0.15902642 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 53.235 51.773 3 0.11103 25785 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 34.346 33.108 180210000 0 0 0 0 0 0 26435000 21408000 28727000 23911000 25184000 31605000 0 9925400 1321700 0 0 0 1589300 0 0 0 10099000 0 23672 122 22943 439624;439625;439626;439627;439628;439629;439630;439631;439632;439633 269929;269930;269931;269932 269929 0 YQAVHSDEVEDILALDIALRR Unmodified 2425.2601 0.26013745 122 P06149 dld D-lactate dehydrogenase yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 47.806 46.535 4 8.152E-07 18639 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 75.646 68.024 67362000 0 0 0 4815100 0 2242300 0 0 0 13280000 15130000 14308000 0 0 0 0 3377900 3388300 0 0 0 5194200 0 5625300 23673 122 22944 439634;439635;439636;439637;439638;439639;439640;439641;439642 269933;269934;269935;269936 269935 4 YQAVIIGFGK Unmodified 1094.6124 0.61243078 1886 P77212 rclA Probable pyridine nucleotide-disulfide oxidoreductase RclA yes yes 0 0 0 By matching By MS/MS By MS/MS 1 1 1 36.999 35.559 2 0.00057551 17082 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 94.114 82.893 52614000 17500000 18711000 16403000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23674 1886 22945 439643;439644;439645 269937;269938 269938 2 YQDALVELAELR Unmodified 1418.7405 0.74054442 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 48.954 47.615 2;3 1.0236E-11 23137 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 187.42 138 1102300000 103090000 97613000 76802000 0 0 0 97146000 98802000 91317000 0 0 0 80403000 85031000 70253000 0 0 0 97073000 107990000 96736000 0 0 0 23675 62 22946 439646;439647;439648;439649;439650;439651;439652;439653;439654;439655;439656;439657;439658;439659;439660;439661;439662;439663;439664;439665;439666;439667;439668;439669 269939;269940;269941;269942;269943;269944;269945;269946;269947;269948;269949;269950;269951;269952;269953;269954;269955;269956;269957;269958;269959;269960;269961;269962 269953 24 YQDALVELAELREPVDAFFDK Unmodified 2467.2271 0.22710599 62 P00961 glyS Glycine--tRNA ligase beta subunit yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.695 53.261 3 1.3676E-21 26470 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 159.78 156.11 2975400000 288870000 235990000 296370000 6797800 7487200 6564800 196850000 203470000 204010000 23912000 24478000 25702000 195510000 208360000 183480000 0 0 0 320180000 261490000 244210000 14601000 14740000 12322000 23676 62 22947 439670;439671;439672;439673;439674;439675;439676;439677;439678;439679;439680;439681;439682;439683;439684;439685;439686;439687;439688;439689;439690 269963;269964;269965;269966;269967;269968;269969;269970;269971;269972;269973;269974;269975 269964 13 YQDGENAGYPTLCK Unmodified 1614.6984 0.69842161 1574 P45527 yhbU Uncharacterized protease YhbU yes yes 0 0 0 By matching By matching By matching By MS/MS 1 1 1 1 23.253 22.383 2 0.00070607 9148 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 66.595 62.922 15751000 0 0 0 0 0 0 3928900 4713400 4057400 0 0 0 0 0 3051000 0 0 0 0 0 0 0 0 0 23677 1574 22948 439691;439692;439693;439694 269976 269976 1 YQDGSVLAQLGEPDMR Unmodified 1777.8305 0.83049842 1575 P45568 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.387 39.713 2 1.9691E-18 19768 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 190.1 174.73 156180000 13810000 8992300 11967000 0 0 0 10032000 10610000 10115000 0 0 0 15546000 16018000 12636000 0 0 0 14605000 13497000 18351000 0 0 0 23678 1575 22949 439695;439696;439697;439698;439699;439700;439701;439702;439703;439704;439705;439706 269977;269978;269979;269980;269981 269977 5 YQELKDIIAILGMDELSEEDKLVVAR Unmodified 2989.5682 0.56818929 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 2 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 2 2 2 2 2 2 2 2 54.585 53.507 3;4 8.1517E-61 21322 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 260.08 258.22 1448000000 9372100 9085400 0 51245000 49052000 44074000 0 0 0 155470000 175670000 148600000 0 0 0 69658000 119570000 179790000 0 0 0 159830000 139460000 137160000 23679 646 22950 439707;439708;439709;439710;439711;439712;439713;439714;439715;439716;439717;439718;439719;439720;439721;439722;439723;439724;439725;439726;439727;439728;439729;439730;439731;439732 269982;269983;269984;269985;269986;269987;269988;269989;269990;269991;269992;269993;269994;269995;269996;269997;269998 269994 17 YQFQTGSDCEVILALYQEK Unmodified 2291.078 0.07799891 1191 P22106 asnB Asparagine synthetase B [glutamine-hydrolyzing] yes yes 0 0 0 By matching By MS/MS By matching By matching 1 1 1 1 51.167 49.766 2 1.6732E-06 24630 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 121.79 115.51 32581000 4855800 0 0 0 0 0 10988000 9393800 7343100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23680 1191 22951 439733;439734;439735;439736 269999 269999 1 YQFTDILLGPR Unmodified 1321.703 0.7030367 1029 P0AGL7 rsmE Ribosomal RNA small subunit methyltransferase E yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.659 49.311 2 2.664E-06 24376 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 155.07 146.15 132530000 14727000 12724000 14506000 0 0 0 8666200 8850200 9447600 0 0 0 8248300 7906200 8850700 0 0 0 13028000 11753000 13826000 0 0 0 23681 1029 22952 439737;439738;439739;439740;439741;439742;439743;439744;439745;439746;439747;439748 270000;270001;270002;270003;270004;270005 270000 6 YQGEYVAGLAVK Unmodified 1296.6714 0.67140222 428 P0A8G6 wrbA NAD(P)H dehydrogenase (quinone) yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 1 2 2 2 2 29.19 27.925 2;3 2.3921E-05 13177 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 119.68 109.69 8180600000 881090000 849430000 888070000 0 0 0 1515300000 1491900000 1377600000 0 0 0 213840000 200990000 206970000 0 0 0 175140000 187700000 192580000 0 0 0 23682 428 22953 439749;439750;439751;439752;439753;439754;439755;439756;439757;439758;439759;439760;439761;439762;439763;439764;439765;439766;439767;439768;439769;439770;439771 270006;270007;270008;270009;270010;270011;270012;270013;270014;270015;270016;270017;270018;270019;270020;270021;270022;270023;270024;270025;270026;270027;270028;270029;270030 270008 25 YQGGHNAGHTLVINGEK Unmodified 1793.8809 0.8808945 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 3 3 3 1 3 3 3 12.041 12.89 2;3;4 5.122E-31 3547 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 287.54 281.31 2379700000 211760000 204030000 207740000 4009000 4259200 6610500 211280000 193270000 175330000 0 0 0 199030000 178680000 148600000 1652000 0 0 181850000 224910000 226690000 0 0 0 23683 333 22954 439772;439773;439774;439775;439776;439777;439778;439779;439780;439781;439782;439783;439784;439785;439786;439787;439788;439789;439790;439791;439792;439793;439794;439795;439796;439797;439798;439799;439800;439801;439802;439803;439804;439805;439806;439807;439808;439809;439810;439811;439812;439813;439814 270031;270032;270033;270034;270035;270036;270037;270038;270039;270040;270041;270042;270043;270044;270045;270046;270047;270048;270049;270050;270051;270052;270053;270054;270055;270056;270057;270058 270039 28 YQGIPVGGYTK Unmodified 1181.6081 0.60807369 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching 2 1 1 1 1 1 1 1 1 1 1 1 1 1 24.989 24.132 2 8.9646E-05 10262 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 121.83 99.09 1588200000 62149000 58535000 51917000 0 0 0 157750000 146470000 150690000 0 0 0 126970000 128550000 107330000 920970 1019300 0 190780000 193510000 211630000 0 0 0 23684 1491 22955 439815;439816;439817;439818;439819;439820;439821;439822;439823;439824;439825;439826;439827;439828;439829 270059;270060;270061;270062;270063;270064 270063 6 YQGLVAQIELLK Unmodified 1373.7919 0.79185171 1903 P77395 ybbN Uncharacterized protein YbbN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 2 2 1 1 1 47.238 45.766 2;3 0.00051361 21502 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 75.695 71.979 1341800000 113920000 115100000 112560000 1371800 1355900 1334100 128240000 103800000 126760000 2482800 2493900 2037200 96094000 94445000 101660000 0 0 0 119730000 119620000 97157000 0 705120 922990 23685 1903 22956 439830;439831;439832;439833;439834;439835;439836;439837;439838;439839;439840;439841;439842;439843;439844;439845;439846;439847;439848;439849;439850;439851;439852;439853;439854;439855;439856;439857;439858;439859 270065;270066;270067;270068;270069;270070;270071;270072;270073;270074;270075;270076;270077;270078;270079;270080 270076 16 YQGVVGLEGDTLAACLEDYFMR Unmodified 2506.1508 0.15084628 292 P0A6Y5 hslO 33 kDa chaperonin yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 55.629 54.15 2 7.3943E-28 26709 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 188.9 186.4 229230000 0 0 0 0 0 0 23129000 21223000 0 0 1716900 0 29838000 24437000 26606000 0 0 0 33888000 31667000 36725000 0 0 0 23686 292 22957 439860;439861;439862;439863;439864;439865;439866;439867;439868 270081;270082;270083 270081 3 YQIQNVVLDTVMLAK Unmodified 1733.9386 0.9385923 1859 P76422 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 53.946 52.495 2 0.00072381 25538 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 66.538 57.349 70309000 0 0 0 0 0 0 6012300 5388700 7093000 0 0 0 6508800 7819600 4915200 0 0 0 9960800 10615000 11995000 0 0 0 23687 1859 22958 439869;439870;439871;439872;439873;439874;439875;439876;439877 270084;270085;270086;270087 270084 0 YQISVKPQGYQQAVTVK Unmodified 1936.0418 0.04181182 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 1 By matching By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.36 25.055 3 1.3294E-06 11215 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 78.078 77.686 223100000 13479000 7170400 10712000 2736300 2249000 2521100 9930400 11350000 8195300 5989000 6784000 7712000 13030000 14336000 12977000 0 0 0 25315000 27095000 26833000 4746600 3930200 6010400 23688 477 22959 439878;439879;439880;439881;439882;439883;439884;439885;439886;439887;439888;439889;439890;439891;439892;439893;439894;439895;439896;439897;439898 270088;270089;270090;270091;270092;270093;270094;270095;270096;270097;270098;270099 270096 12 YQLANCYMGR Unmodified 1274.5536 0.55361205 498 P0A991 fbaB Fructose-bisphosphate aldolase class 1 yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.591 24.49 2 0.09084 10871 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 44.377 43.117 126000000 14562000 16863000 16827000 0 0 0 21193000 23540000 25026000 0 0 0 2015300 0 2349700 0 0 0 0 3623200 0 0 0 0 23689 498 22960 439899;439900;439901;439902;439903;439904;439905;439906;439907 270100 270100 0 YQLDTQALSLR Unmodified 1306.6881 0.68811492 261 P0A6L9 hscB Co-chaperone protein HscB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.497 34.928 2 1.9878E-05 16870 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 162.88 119.07 398280000 22882000 17579000 17160000 550530 437780 416360 32730000 38854000 35812000 0 0 0 34931000 27057000 28203000 0 0 0 51359000 43313000 46995000 0 0 0 23690 261 22961 439908;439909;439910;439911;439912;439913;439914;439915;439916;439917;439918;439919;439920;439921;439922 270101;270102;270103;270104;270105;270106 270104 6 YQLNPQGMDTSNMDVFVQQYADTVK Unmodified 2891.3106 0.3105944 857 P0AEG4 dsbA Thiol:disulfide interchange protein DsbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 52.786 51.45 2;3 2.5475E-40 25075 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 254.59 254.59 2538800000 189990000 206010000 164540000 0 0 0 165650000 167590000 175460000 0 1428200 0 240320000 239240000 218740000 0 0 0 250400000 255340000 264120000 0 0 0 23691 857 22962 439923;439924;439925;439926;439927;439928;439929;439930;439931;439932;439933;439934;439935;439936;439937;439938;439939;439940;439941;439942;439943;439944;439945;439946;439947 270107;270108;270109;270110;270111;270112;270113;270114;270115;270116;270117;270118;270119;270120;270121;270122;270123;270124;270125;270126;270127;270128;270129;270130 270116 24 YQLTALEAR Unmodified 1063.5662 0.56620887 1331 P29217 yceH UPF0502 protein YceH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1 1 1 2 1 1 27.232 26.039 2 5.2938E-06 11624 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 173.23 118.69 851960000 85407000 96948000 74958000 0 0 0 84362000 77766000 75368000 0 0 0 61206000 49174000 51000000 0 0 0 68891000 63511000 63369000 0 0 0 23692 1331 22963 439948;439949;439950;439951;439952;439953;439954;439955;439956;439957;439958;439959;439960;439961;439962;439963 270131;270132;270133;270134;270135;270136;270137;270138;270139;270140;270141;270142;270143 270143 13 YQLTELAR Unmodified 992.5291 0.52909508 539 P0A9M8 pta Phosphate acetyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1 1 2 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 26.691 25.549 2 1.6927E-06 11620 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 191.03 77.01 4303800000 252320000 240790000 220260000 0 2752000 2309900 412710000 391880000 409010000 20570000 17586000 21243000 409230000 390670000 385580000 3436600 1951600 2587700 393880000 367000000 349490000 2514400 2867900 3141600 23693 539 22964 439964;439965;439966;439967;439968;439969;439970;439971;439972;439973;439974;439975;439976;439977;439978;439979;439980;439981;439982;439983;439984;439985;439986;439987;439988;439989;439990;439991;439992 270144;270145;270146;270147;270148;270149;270150;270151;270152;270153;270154;270155;270156;270157;270158;270159;270160;270161;270162;270163 270155 20 YQNTGQVCAAAK Unmodified 1309.6085 0.60848439 1825 P76149 sad Succinate semialdehyde dehydrogenase [NAD(P)+] Sad yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 11.834 12.658 2 2.2162E-05 3518 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 120.99 115.07 98524000 21417000 16614000 15054000 0 0 0 7241700 6581800 8165000 0 0 0 5987500 6074600 5172600 0 0 0 0 0 6216200 0 0 0 23694 1825 22965 439993;439994;439995;439996;439997;439998;439999;440000;440001;440002 270164 270164 1 YQNTNIEGIYAVGDNTGAVELTPVAVAAGR Unmodified 3062.5309 0.53089258 128 P06715 gor Glutathione reductase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 51.192 49.939 3 9.2894E-17 24668 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 149.16 143.87 471590000 33877000 31239000 21122000 0 0 0 36114000 40794000 39779000 0 0 0 43666000 43518000 41646000 0 0 0 47921000 46532000 45387000 0 0 0 23695 128 22966 440003;440004;440005;440006;440007;440008;440009;440010;440011;440012;440013;440014 270165;270166;270167;270168;270169;270170;270171 270165 6 YQNVGGGCTHWGTIPSK Unmodified 1860.8577 0.85771622 1302 P27306 sthA Soluble pyridine nucleotide transhydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 22.087 21.961 2;3 2.7637E-14 8920 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 201.08 198.05 1259400000 216580000 167120000 149920000 5797200 5284300 3316200 71950000 69319000 55950000 6826600 5634400 5119900 50815000 50435000 41028000 0 0 0 115870000 111770000 116180000 4291300 3010800 3181000 23696 1302 22967 440015;440016;440017;440018;440019;440020;440021;440022;440023;440024;440025;440026;440027;440028;440029;440030;440031;440032;440033;440034;440035;440036;440037;440038;440039;440040;440041;440042;440043;440044;440045;440046;440047;440048 270172;270173;270174;270175;270176;270177;270178;270179;270180;270181;270182;270183;270184;270185;270186;270187 270181 16 YQPGDALGVWYQNDPALVK Unmodified 2133.0531 0.053104788 1503 P38038 cysJ Sulfite reductase [NADPH] flavoprotein alpha-component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 49.897 48.518 2;3 9.1621E-10 23649 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 159.82 154.74 1296600000 137530000 119780000 98966000 2813600 3791200 2880000 68605000 61387000 118760000 0 0 0 105670000 98077000 84146000 0 0 0 123430000 129290000 136380000 2514500 2602100 0 23697 1503 22968 440049;440050;440051;440052;440053;440054;440055;440056;440057;440058;440059;440060;440061;440062;440063;440064;440065;440066;440067;440068;440069;440070;440071;440072;440073;440074;440075;440076;440077;440078 270188;270189;270190;270191;270192;270193;270194;270195;270196;270197;270198;270199;270200;270201;270202;270203;270204;270205;270206 270189 19 YQPLSEYEAQR Unmodified 1382.6466 0.64664404 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.029 23.13 2 4.742E-05 10250 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 152.34 150.19 1670600000 162560000 0 0 4490000 3649000 3583700 151310000 132210000 135030000 20115000 20634000 23251000 147970000 134260000 132590000 7708900 4791400 4274500 178570000 182660000 184550000 11959000 11534000 12939000 23698 882 22969 440079;440080;440081;440082;440083;440084;440085;440086;440087;440088;440089;440090;440091;440092;440093;440094;440095;440096;440097;440098;440099;440100;440101 270207;270208;270209;270210;270211;270212;270213;270214;270215;270216;270217;270218;270219;270220;270221;270222;270223;270224;270225;270226;270227;270228 270215 21 YQPLSEYEAQRR Unmodified 1538.7478 0.74775506 882 P0AES4 gyrA DNA gyrase subunit A yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 2 2 2 1 1 1 1 34.479 33.841 3 0.0061981 5855 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 53.569 52.285 67966000 0 0 0 0 0 0 2530000 0 2337000 7952100 6330800 4978200 0 4076100 3567600 7617300 4376100 6976700 3290100 5763300 4458200 0 3713000 0 23699 882 22970 440102;440103;440104;440105;440106;440107;440108;440109;440110;440111;440112;440113;440114;440115;440116;440117;440118 270229;270230;270231 270229 3 YQQEPGVSGPLK Unmodified 1301.6616 0.66156582 1160 P19926 agp Glucose-1-phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 19.325 19.824 2 2.7043E-06 7562 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 140.16 91.603 805770000 216650000 189330000 206890000 0 0 0 33410000 32524000 35211000 0 0 0 14746000 14587000 15018000 0 0 0 15270000 17215000 14912000 0 0 0 23700 1160 22971 440119;440120;440121;440122;440123;440124;440125;440126;440127;440128;440129;440130 270232;270233;270234;270235;270236;270237;270238;270239;270240;270241;270242;270243 270238 11 YQQHGMAPLTQEQKPVAK Unmodified 2053.0415 0.041494244 502 P0A9A6 ftsZ Cell division protein FtsZ yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 2 3 3 3 3 3 3 3 3 3 3 2 2 3 3 3 2 2 1 13.614 14.231 2;3;4 2.6667E-36 4356 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 280.97 268.41 4913300000 395830000 390370000 365560000 56048000 51475000 53164000 386090000 238890000 332750000 86243000 61838000 56633000 338540000 291000000 307770000 56530000 73539000 55527000 423390000 416210000 420180000 28400000 20957000 6385600 23701 502 22972 440131;440132;440133;440134;440135;440136;440137;440138;440139;440140;440141;440142;440143;440144;440145;440146;440147;440148;440149;440150;440151;440152;440153;440154;440155;440156;440157;440158;440159;440160;440161;440162;440163;440164;440165;440166;440167;440168;440169;440170;440171;440172;440173;440174;440175;440176;440177;440178;440179;440180;440181;440182;440183;440184;440185;440186;440187;440188;440189;440190;440191;440192;440193 270244;270245;270246;270247;270248;270249;270250;270251;270252;270253;270254;270255;270256;270257;270258;270259;270260;270261;270262;270263;270264;270265;270266;270267;270268;270269;270270;270271;270272;270273;270274;270275;270276;270277;270278;270279;270280;270281;270282;270283;270284;270285;270286;270287;270288;270289;270290;270291;270292;270293;270294;270295;270296;270297 270276 53 YQQLENLESGWK Unmodified 1493.7151 0.71505795 447 P0A8N0 matP Macrodomain Ter protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.404 33.059 2 3.2701E-05 16078 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 113.15 97.58 119210000 17804000 18546000 14422000 0 0 0 6968900 8998600 7827100 1764200 0 0 5149700 6314600 4415600 1908200 0 1788800 7873100 8546100 6883200 0 0 0 23702 447 22973 440194;440195;440196;440197;440198;440199;440200;440201;440202;440203;440204;440205;440206;440207;440208 270298;270299 270298 2 YQQLWSQHR Unmodified 1244.6051 0.60505399 260 P0A6L7 uxaB Altronate oxidoreductase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching 1 1 1 1 16.7 17.303 2 0.048711 6249 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 70.525 65.323 16417000 0 0 0 0 0 0 3817600 4283400 5749200 0 0 0 0 0 0 0 0 0 2566800 0 0 0 0 0 23703 260 22974 440209;440210;440211;440212 270300;270301 270301 0 YQQNPVTGGLIFIDR Unmodified 1719.8944 0.8944193 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 2 2 2 1 2 2 2 1 2 2 2 1 1 1 46.878 45.48 2;3 5.9308E-27 22457 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 231.92 228.39 1519800000 106350000 100620000 100290000 3890600 3632400 4119200 105470000 110300000 92240000 0 1356000 0 112190000 99031000 104990000 0 2053400 0 185570000 186690000 190290000 4209400 2727000 3810100 23704 1218 22975 440213;440214;440215;440216;440217;440218;440219;440220;440221;440222;440223;440224;440225;440226;440227;440228;440229;440230;440231;440232;440233;440234;440235;440236;440237;440238;440239;440240;440241;440242;440243;440244;440245;440246 270302;270303;270304;270305;270306;270307;270308;270309;270310;270311;270312;270313;270314;270315;270316;270317;270318;270319;270320;270321;270322 270305 21 YQTFWQQFGLVLK Unmodified 1656.8664 0.86641364 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 54.798 53.38 2 1.0751E-07 26407 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 155.42 149.78 968770000 106250000 109020000 104660000 0 1665900 1562000 0 72756000 72037000 0 0 0 68408000 64681000 77099000 0 0 0 97167000 94837000 98634000 0 0 0 23705 295 22976 440247;440248;440249;440250;440251;440252;440253;440254;440255;440256;440257;440258;440259 270323;270324;270325;270326;270327;270328 270323 3 YQTTTIVNTDDAIPGSGMFVR Unmodified 2285.0998 0.099796984 1514 P39187 ytfJ Uncharacterized protein YtfJ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 46.761 45.365 2;3 3.2282E-54 21975 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 271.08 266.9 358850000 69415000 68305000 64458000 0 0 0 18257000 19063000 17757000 0 0 0 8471000 13827000 14330000 0 0 0 21347000 23139000 20487000 0 0 0 23706 1514 22977 440260;440261;440262;440263;440264;440265;440266;440267;440268;440269;440270;440271;440272;440273;440274;440275;440276;440277;440278;440279;440280;440281;440282 270329;270330;270331;270332;270333;270334;270335;270336;270337;270338;270339;270340 270339 12 YQVDINNLTQR Unmodified 1362.6892 0.68917755 1218 P23845 cysN Sulfate adenylyltransferase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 31.332 30.024 2;3 7.206E-20 13998 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 238.32 229.79 1804600000 117810000 112200000 95682000 0 0 0 116280000 112940000 119630000 4821100 5330400 0 128560000 126040000 141120000 2647300 1172300 1424200 250560000 230930000 228010000 3042500 2321400 4046100 23707 1218 22978 440283;440284;440285;440286;440287;440288;440289;440290;440291;440292;440293;440294;440295;440296;440297;440298;440299;440300;440301;440302;440303;440304;440305;440306;440307;440308;440309;440310;440311;440312 270341;270342;270343;270344;270345;270346;270347;270348;270349;270350;270351;270352;270353;270354;270355 270350 15 YQVETQR Unmodified 922.45084 0.45084476 1912 P77526 yfcG Disulfide-bond oxidoreductase YfcG yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 11.693 12.478 2 0.0038181 3346 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 116.11 86.273 113270000 25699000 23348000 21856000 0 0 0 14451000 10508000 9386100 0 0 0 0 0 2745500 0 0 0 0 5272200 0 0 0 0 23708 1912 22979 440313;440314;440315;440316;440317;440318;440319;440320 270356;270357 270357 0 YQYALSVLEKPMDFTGNDTYNLDR Unmodified 2852.3327 0.33271005 1221 P23865 prc Tail-specific protease yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 49.718 48.32 3 3.9604E-10 22599 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 121.47 119.56 395670000 41332000 32644000 24634000 0 0 1527900 28477000 23213000 34819000 0 0 0 34284000 27504000 30435000 0 0 0 33659000 40672000 42467000 0 0 0 23709 1221 22980 440321;440322;440323;440324;440325;440326;440327;440328;440329;440330;440331;440332;440333 270358;270359;270360;270361;270362;270363;270364;270365 270365 7 YRAEELAEER Unmodified 1264.6048 0.60477922 245 P0A6H5 hslU ATP-dependent protease ATPase subunit HslU yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 13.97 14.568 2;3 3.8187E-23 4550 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 260.76 230.5 1226100000 85587000 66163000 70815000 30221000 27521000 30142000 91373000 87452000 81958000 41900000 38206000 40981000 60002000 66861000 55252000 14148000 11325000 14823000 74761000 87616000 73714000 25119000 25997000 24203000 23710 245 22981 440334;440335;440336;440337;440338;440339;440340;440341;440342;440343;440344;440345;440346;440347;440348;440349;440350;440351;440352;440353;440354;440355;440356;440357;440358;440359;440360;440361;440362;440363;440364;440365;440366;440367;440368;440369;440370;440371;440372;440373;440374;440375;440376;440377;440378;440379;440380;440381 270366;270367;270368;270369;270370;270371;270372;270373;270374;270375;270376;270377;270378;270379;270380;270381;270382;270383;270384;270385;270386;270387;270388;270389;270390;270391;270392;270393;270394;270395;270396;270397;270398;270399 270396 32 YREEVPCYCGK Unmodified 1459.6224 0.6224199 1231 P23917 mak Fructokinase yes yes 0 0 1 By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 15.022 15.807 2 2.5669E-05 5462 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 141.91 122.64 91244000 12377000 11815000 10741000 0 0 0 8006800 8935600 9247000 0 0 0 4422200 0 6274800 0 0 0 6786500 6809400 5829100 0 0 0 23711 1231 22982 440382;440383;440384;440385;440386;440387;440388;440389;440390;440391;440392;440393 270400;270401;270402 270400 3 YREHLGLCQASAVVMTQDDLPFAK Unmodified 2748.3364 0.33635564 1185 P21645 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase yes yes 0 0 1 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 39.538 38.302 3;4 4.3646E-05 15350 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 85.376 78.606 16530000 0 0 0 0 0 0 0 0 0 0 3741400 0 0 0 0 0 2831600 3542900 0 0 0 0 3715900 2698200 23712 1185 22983 440394;440395;440396;440397;440398 270403;270404 270404 2 YRENRPGYPAIAISDVSHISCVGNDFGFNDIFSR Unmodified 3872.8329 0.83290504 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 2 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 2 2 1 1 2 2 2 2 2 50.256 48.851 4;5 1.1714E-34 24076 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 201.49 195.16 414050000 11333000 32392000 31166000 2598800 2663100 0 55838000 51330000 28295000 0 0 0 14183000 26575000 30592000 0 0 0 41921000 41674000 43485000 0 0 0 23713 1658 22984 440399;440400;440401;440402;440403;440404;440405;440406;440407;440408;440409;440410;440411;440412;440413;440414;440415;440416;440417;440418;440419;440420;440421 270405;270406;270407;270408;270409;270410;270411 270407 7 YREPVLVSGTDGVGTK Unmodified 1676.8733 0.87334951 174 P08178 purM Phosphoribosylformylglycinamidine cyclo-ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 2 2 2 1 2 2 2 1 1 1 2 2 2 22.416 21.893 2;3 2.9509E-49 9235 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 339.48 313.43 1434700000 339080000 377130000 319710000 11063000 10829000 6974800 26897000 27026000 31391000 0 0 4220400 36436000 37344000 32864000 1499100 1623000 1222300 60646000 49931000 58827000 0 0 0 23714 174 22985 440422;440423;440424;440425;440426;440427;440428;440429;440430;440431;440432;440433;440434;440435;440436;440437;440438;440439;440440;440441;440442;440443;440444;440445;440446;440447;440448;440449;440450;440451;440452;440453;440454 270412;270413;270414;270415;270416;270417;270418;270419;270420;270421;270422;270423;270424;270425;270426;270427;270428;270429;270430;270431;270432;270433 270423 22 YRESLSIPPSNQR Unmodified 1545.79 0.78995423 1249 P24255 rpoN RNA polymerase sigma-54 factor yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 2 3 3 18.237 18.221 3 0.00019127 5036 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 62.528 57.727 25547000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8925900 9588800 7031900 0 0 0 0 0 0 23715 1249 22986 440455;440456;440457;440458;440459;440460;440461;440462 270434;270435;270436;270437;270438;270439;270440;270441 270437 8 YRGEFEER Unmodified 1084.4938 0.49377221 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 1 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 11.782 12.539 3 0.040363 3451 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 60.019 59.329 351180000 40927000 36760000 30071000 2337700 2734100 2746500 50520000 46865000 44384000 3054000 2179300 2398000 17191000 16365000 12567000 0 0 0 17920000 22166000 0 0 0 0 23716 1662 22987 440463;440464;440465;440466;440467;440468;440469;440470;440471;440472;440473;440474;440475;440476;440477;440478;440479 270442 270442 0 YRLGETGDAIAK Unmodified 1292.6725 0.67246486 1689 P64581 yqjD Uncharacterized protein YqjD yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1 2 2 2 17.365 17.614 2;3 1.5554E-06 5005 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 116.54 103.14 347730000 0 0 0 67002000 41182000 15307000 0 0 0 63935000 50685000 47914000 0 0 0 3541900 0 0 0 0 0 19589000 21226000 17346000 23717 1689 22988 440480;440481;440482;440483;440484;440485;440486;440487;440488;440489;440490;440491;440492;440493;440494;440495;440496;440497 270443;270444;270445;270446;270447;270448;270449;270450;270451;270452;270453;270454;270455;270456;270457;270458;270459 270454 17 YRNEICSFNDDIQGTAAVTVGTLIAASR Unmodified 3041.4876 0.48764756 1283 P26616 maeA NAD-dependent malic enzyme yes yes 0 0 1 By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 53.39 51.968 3 9.3961E-17 24477 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 154.88 148.08 289830000 5700200 0 14382000 0 0 0 21862000 0 14492000 0 0 0 36322000 37653000 32751000 0 0 0 35295000 46825000 44546000 0 0 0 23718 1283 22989 440498;440499;440500;440501;440502;440503;440504;440505;440506;440507 270460;270461;270462;270463;270464;270465 270464 6 YRPETDMADLDNFDAAK Unmodified 1970.868 0.86800613 449 P0A8N5 lysU Lysine--tRNA ligase, heat inducible yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 2 1 1 1 2 1 1 1 1 1 1 33.086 31.394 2;3 1.0241E-30 15281 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 257.04 257.04 2208100000 101020000 0 0 994980 1060000 1069400 579740000 554520000 553870000 2070600 3030700 1950600 225250000 32869000 30942000 0 0 0 36875000 42524000 39317000 0 0 1054700 23719 449 22990 440508;440509;440510;440511;440512;440513;440514;440515;440516;440517;440518;440519;440520;440521;440522;440523;440524;440525;440526;440527;440528 270466;270467;270468;270469;270470;270471;270472;270473;270474;270475;270476;270477;270478;270479 270467 13 YRPETDMADLDNFDSAK Unmodified 1986.8629 0.86292076 448 P0A8N3 lysS Lysine--tRNA ligase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 1 2 2 2 2 2 2 1 31.973 30.539 2;3 1.6322E-39 14730 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 278.79 199.63 4703800000 339640000 309160000 300250000 1453000 2006000 0 433880000 422330000 388210000 0 1545200 1473900 364980000 377000000 350290000 0 0 0 430710000 515110000 464340000 1375800 0 0 23720 448 22991 440529;440530;440531;440532;440533;440534;440535;440536;440537;440538;440539;440540;440541;440542;440543;440544;440545;440546;440547;440548;440549;440550;440551;440552;440553;440554;440555;440556;440557 270480;270481;270482;270483;270484;270485;270486;270487;270488;270489;270490;270491;270492;270493;270494;270495;270496;270497;270498;270499;270500;270501;270502;270503 270481 24 YSASALR Unmodified 766.39735 0.39735263 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 12.954 13.759 2 0.11086 4098 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 61.494 36.821 402560000 48022000 0 0 0 0 0 48317000 0 46958000 0 580460 0 35476000 36416000 33624000 0 0 0 54238000 53034000 45896000 0 0 0 23721 828 22992 440558;440559;440560;440561;440562;440563;440564;440565;440566;440567 270504 270504 0 YSDGDKHAFDQMLHSIGK Unmodified 2047.9422 0.94217413 30 P00490 malP Maltodextrin phosphorylase yes yes 0 0 1 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 3 2 3 2 2 2 1 2 3 2 3 2 1 1 2 2 2 29.81 28.466 3;4;5 4.53E-05 11271 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 80.585 80.577 758050000 14488000 14242000 11497000 0 0 0 34248000 160480000 65023000 52027000 41540000 35658000 34929000 14099000 35037000 20400000 15261000 19592000 69908000 33139000 58067000 8376100 9973500 10073000 23722 30 22993 440568;440569;440570;440571;440572;440573;440574;440575;440576;440577;440578;440579;440580;440581;440582;440583;440584;440585;440586;440587;440588;440589;440590;440591;440592;440593;440594;440595;440596;440597;440598;440599;440600;440601;440602;440603;440604;440605;440606 270505;270506;270507;270508;270509;270510;270511;270512;270513;270514;270515;270516;270517;270518;270519;270520;270521;270522;270523;270524;270525;270526 270510 22 YSDGSANNLTHK Unmodified 1305.5949 0.59494282 29 P00452 nrdA Ribonucleoside-diphosphate reductase 1 subunit alpha yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 11.05 11.877 2 3.152E-32 2984 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 227.88 224.29 719380000 58335000 0 75156000 0 0 0 67172000 62223000 54718000 0 0 0 53847000 50731000 44607000 0 0 0 86949000 85085000 80561000 0 0 0 23723 29 22994 440607;440608;440609;440610;440611;440612;440613;440614;440615;440616;440617;440618 270527;270528;270529;270530;270531;270532;270533;270534;270535;270536;270537;270538 270534 12 YSDHIALPVEIEK Unmodified 1512.7824 0.78240924 295 P0A6Z3 htpG Chaperone protein HtpG yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 2 2 1 2 2 2 2 2 2 1 33.54 32.042 2;3 2.2342E-12 15139 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 190.15 177.99 3798300000 367200000 319150000 262140000 1206700 1399200 0 311950000 328570000 322330000 0 0 1584000 257140000 244670000 231090000 0 0 0 393930000 381170000 373520000 1273200 0 0 23724 295 22995 440619;440620;440621;440622;440623;440624;440625;440626;440627;440628;440629;440630;440631;440632;440633;440634;440635;440636;440637;440638;440639;440640;440641;440642;440643;440644;440645;440646 270539;270540;270541;270542;270543;270544;270545;270546;270547;270548;270549;270550;270551;270552;270553;270554;270555;270556;270557;270558;270559;270560 270551 22 YSDNESQLASVMAHEISHVTQR Unmodified 2501.1605 0.16049976 1708 P66948 bepA Beta-barrel assembly-enhancing protease yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1 2 2 2 2 2 2 1 2 2 2 1 40.63 38.999 3;4 6.7836E-22 18939 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 167.73 160.28 421100000 49803000 49371000 40300000 8694100 4464000 5430900 33657000 31583000 36893000 0 0 0 26215000 22339000 20720000 2607600 0 0 30372000 30890000 25523000 0 2232400 0 23725 1708 22996 440647;440648;440649;440650;440651;440652;440653;440654;440655;440656;440657;440658;440659;440660;440661;440662;440663;440664;440665;440666;440667;440668;440669;440670;440671;440672;440673;440674;440675;440676 270561;270562;270563;270564;270565;270566;270567;270568;270569;270570;270571;270572;270573;270574 270571 14 YSDNGSTLSAVNFPEVSLPLHGGR Unmodified 2516.2296 0.2295656 555 P0A9T0 serA D-3-phosphoglycerate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 1 1 1 1 1 1 1 1 1 46.137 44.672 2;3 1.0629E-09 21706 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 157.91 150.68 837580000 185620000 178570000 181310000 1279200 0 899590 39281000 35384000 37375000 0 0 0 26451000 24673000 27657000 0 0 0 34207000 33764000 31097000 0 0 0 23726 555 22997 440677;440678;440679;440680;440681;440682;440683;440684;440685;440686;440687;440688;440689;440690;440691;440692;440693 270575;270576;270577;270578;270579;270580;270581;270582;270583;270584;270585;270586 270583 12 YSDVGLVTPLR Unmodified 1218.6608 0.66083754 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.026 33.364 2 1.9897E-07 16260 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 166.07 160.03 730410000 153810000 147550000 132330000 2986500 3389100 3436200 57825000 59355000 54640000 3413700 0 4143100 13287000 12633000 11740000 0 0 0 22491000 21314000 23800000 1050800 1226600 0 23727 1376 22998 440694;440695;440696;440697;440698;440699;440700;440701;440702;440703;440704;440705;440706;440707;440708;440709;440710;440711;440712 270587;270588;270589;270590;270591;270592;270593;270594 270588 8 YSEALDVAR Unmodified 1022.5033 0.50327426 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 20.083 20.362 2 7.9621E-05 7528 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 141.39 111.2 181810000 15731000 13591000 12659000 3126300 2749000 3177500 12981000 13763000 13446000 4419500 5150100 4646800 8266200 8134000 6772000 0 0 0 16544000 14111000 13686000 3343600 2731900 2780200 23728 1083 22999 440713;440714;440715;440716;440717;440718;440719;440720;440721;440722;440723;440724;440725;440726;440727;440728;440729;440730;440731;440732;440733 270595;270596;270597;270598;270599 270599 4 YSFGTFR Unmodified 876.413 0.41300269 500 P0A996 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.929 27.602 2 0.00097355 10488 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 139.92 132.09 300360000 0 0 0 0 0 0 43087000 47729000 46426000 16988000 17006000 14408000 18310000 21548000 17787000 4773300 3534300 3524600 12352000 12407000 12318000 3122300 3042500 1999900 23729 500 23000 440734;440735;440736;440737;440738;440739;440740;440741;440742;440743;440744;440745;440746;440747;440748;440749;440750;440751 270600;270601;270602;270603;270604;270605;270606;270607;270608;270609;270610 270604 11 YSGEQTQK Unmodified 939.42977 0.42977497 556 P0A9T4 tas Protein tas yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 4.8533 5.7453 2 0.00040535 1125 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 140.98 132.65 156780000 0 0 0 0 0 0 24653000 0 28590000 0 0 0 17781000 15474000 18644000 0 0 0 16494000 18683000 16457000 0 0 0 23730 556 23001 440752;440753;440754;440755;440756;440757;440758;440759 270611;270612;270613;270614;270615;270616;270617 270612 7 YSGHLIDFNVR Unmodified 1319.6622 0.66223452 1157 P19319 narZ Respiratory nitrate reductase 2 alpha chain yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.077 28.532 3 0.0061681 11223 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 61.815 58.494 66305000 6477600 5769400 7375700 1975800 2154400 2054300 10870000 9212400 7870900 3284300 3872500 2898400 0 2128600 0 0 0 360720 0 0 0 0 0 0 23731 1157 23002 440760;440761;440762;440763;440764;440765;440766;440767;440768;440769;440770;440771;440772;440773 270618;270619;270620;270621;270622;270623;270624 270618 7 YSGSSYPFPTTSETPR Unmodified 1775.8002 0.80024414 176 P08191 fimH Protein FimH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 31.3 29.086 2 3.9667E-06 11133 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 115.14 106.18 11965000 0 0 0 0 0 0 0 0 0 3949600 3633300 3264500 0 0 0 0 0 0 0 0 0 0 0 1117900 23732 176 23003 440774;440775;440776;440777 270625;270626;270627 270626 3 YSGWNSELGQQILK Unmodified 1621.81 0.81002097 55 P00944 xylA Xylose isomerase yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 40.291 38.708 2 0.058322 18822 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 61.577 60.608 56237000 14872000 13730000 9942600 0 0 0 0 0 6757100 0 0 0 3621000 3182000 0 0 0 0 4131500 0 0 0 0 0 23733 55 23004 440778;440779;440780;440781;440782;440783;440784 270628 270628 1 YSIGQPFVYPR Unmodified 1325.6768 0.67682195 657 P0ABH7 gltA Citrate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 39.268 37.444 2 2.4201E-07 18174 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 162.97 161.59 6195300000 1335100000 1054800000 1142300000 0 0 0 325520000 304460000 325670000 6899800 6879400 0 162670000 135250000 141660000 0 0 0 418060000 409190000 426800000 0 0 0 23734 657 23005 440785;440786;440787;440788;440789;440790;440791;440792;440793;440794;440795;440796;440797;440798 270629;270630;270631;270632;270633;270634;270635;270636;270637;270638;270639;270640 270635 12 YSIIQTK Unmodified 851.47527 0.4752686 819 P0ADY1 ppiD Peptidyl-prolyl cis-trans isomerase D yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.577 18.988 2 0.004947 5714 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 101.69 71.884 499350000 20229000 20558000 17439000 8027100 7737700 6102600 40002000 38707000 40961000 20695000 14119000 12315000 34225000 26709000 26089000 2923200 2149000 1790900 48099000 45206000 43451000 8170700 6870100 6774600 23735 819 23006 440799;440800;440801;440802;440803;440804;440805;440806;440807;440808;440809;440810;440811;440812;440813;440814;440815;440816;440817;440818;440819;440820;440821;440822;440823;440824;440825;440826;440827;440828 270641;270642;270643;270644;270645;270646;270647 270645 7 YSINNIIVSRPEIK Unmodified 1644.9199 0.91990577 1494 P37751 wbbK Putative glycosyltransferase WbbK yes yes 0 0 1 By matching By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.646 32.171 3 0.012057 12438 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 45.434 43.971 245900000 5672100 6949300 3704500 0 0 0 18806000 23720000 24627000 22516000 0 5477800 20122000 17155000 17710000 0 2242000 0 23351000 27434000 26410000 0 0 0 23736 1494 23007 440829;440830;440831;440832;440833;440834;440835;440836;440837;440838;440839;440840;440841;440842;440843 270648;270649;270650;270651 270648 2 YSLDADDAACAIER Unmodified 1568.6777 0.67768617 1336 P30125 leuB 3-isopropylmalate dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 33.048 31.691 2 1.9193E-14 14983 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.96 188.96 203980000 56940000 52498000 54992000 0 0 0 0 5134800 0 0 0 0 5490700 5930600 5941300 0 0 0 5282600 5737800 6029100 0 0 0 23737 1336 23008 440844;440845;440846;440847;440848;440849;440850;440851;440852;440853 270652;270653;270654;270655;270656 270653 4 YSLLGAMR Unmodified 909.47422 0.47422274 929 P0AFD4 nuoH NADH-quinone oxidoreductase subunit H yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 32.866 31.293 2 0.00075894 14069 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 124.37 115.13 103240000 0 0 0 0 0 486610 11402000 9676400 10512000 1597700 1460500 1800000 11448000 10136000 10319000 0 0 459530 16825000 17117000 0 0 0 0 23738 929 23009 440854;440855;440856;440857;440858;440859;440860;440861;440862;440863;440864;440865;440866 270657;270658;270659 270659 3 YSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAK Unmodified 3758.7565 0.7564939 270 P0A6P9 eno Enolase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 54.5 53.046 3 3.3509E-07 26027 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 66.884 65.138 560110000 62259000 57690000 49010000 0 2134800 0 50720000 56266000 44674000 0 0 0 55907000 53459000 0 0 0 0 63594000 64392000 0 0 0 0 23739 270 23010 440867;440868;440869;440870;440871;440872;440873;440874;440875;440876;440877 270660 270660 1 YSPDYFTFGDVQHDKDTVK Unmodified 2261.0277 0.027677899 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 2 2 2 1 1 31.843 30.526 3;4 1.5495E-17 14776 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 159.8 154.27 1744000000 176350000 221230000 173470000 0 0 0 148230000 140780000 130730000 11679000 7724900 15406000 103850000 99179000 89694000 3922500 2111700 2512300 126510000 145700000 132920000 5573900 0 6406100 23740 1408 23011 440878;440879;440880;440881;440882;440883;440884;440885;440886;440887;440888;440889;440890;440891;440892;440893;440894;440895;440896;440897;440898;440899;440900;440901;440902;440903;440904;440905;440906;440907;440908;440909;440910;440911 270661;270662;270663;270664;270665;270666;270667;270668;270669;270670;270671;270672;270673;270674;270675;270676;270677;270678;270679;270680;270681;270682;270683 270661 23 YSPDYFTFGDVQHDKDTVKDLGFAGFK Unmodified 3096.4505 0.450517 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 2 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 46.656 44.66 4 0.1583 18244 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 17.222 16.533 22821000 0 0 0 955770 0 0 0 0 0 4219900 3992800 3732800 0 0 0 0 0 0 0 0 0 5840600 4078700 0 23741 1408 23012 440912;440913;440914;440915;440916;440917 270684 270684 1 YSPELDSHGQYSLPASGK Unmodified 1934.901 0.90102082 1801 P76002 pliG Inhibitor of g-type lysozyme yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 1 24.924 24.136 2;3 1.7248E-06 10641 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 120.29 114.56 110220000 29539000 39212000 33782000 0 0 0 0 0 0 0 0 0 4171200 0 3515400 0 0 0 0 0 0 0 0 0 23742 1801 23013 440918;440919;440920;440921;440922;440923;440924 270685;270686 270685 1 YSPVEGADANALPDQVPEEVKEER Unmodified 2641.2508 0.25075456 863 P0AEI4 rimO Ribosomal protein S12 methylthiotransferase RimO yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.122 31.468 3 1.9421E-10 14958 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 128.29 123.98 576460000 41002000 51096000 43042000 4094400 4688300 4315800 39807000 39292000 31225000 4945200 5575400 6019500 33489000 41041000 37639000 0 0 0 59951000 57245000 61355000 0 5558800 5080000 23743 863 23014 440925;440926;440927;440928;440929;440930;440931;440932;440933;440934;440935;440936;440937;440938;440939;440940;440941;440942;440943;440944 270687;270688;270689;270690;270691;270692;270693;270694;270695;270696;270697;270698;270699;270700;270701;270702 270693 16 YSQNAALDMYK Unmodified 1302.5914 0.59143734 1097 P14407 fumB Fumarate hydratase class I, anaerobic yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 25.036 23.927 2 1.7159E-05 10151 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 139.43 136.18 355950000 0 4232300 3633300 0 0 0 70229000 59523000 63144000 699560 0 942890 47323000 40434000 34970000 0 0 0 11226000 9428100 10160000 0 0 0 23744 1097 23015 440945;440946;440947;440948;440949;440950;440951;440952;440953;440954;440955;440956;440957 270703;270704;270705;270706;270707;270708 270707 6 YSQNAPLDMYK Unmodified 1328.6071 0.60708741 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.657 25.545 2 8.3686E-06 11424 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 148.91 147.53 1279200000 197330000 196840000 184860000 1459400 1522200 1716600 50116000 46493000 50375000 0 0 0 71925000 83214000 72717000 0 0 583010 116990000 104490000 98610000 0 0 0 23745 696 23016 440958;440959;440960;440961;440962;440963;440964;440965;440966;440967;440968;440969;440970;440971;440972;440973 270709;270710;270711;270712;270713;270714;270715;270716;270717;270718;270719 270715 10 YSSDYFDQLHAYAIELINK Unmodified 2289.0954 0.095363533 63 P00962 glnS Glutamine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 54.296 52.848 2;3 1.0997E-22 25943 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 193.77 179.41 1795800000 109430000 101400000 97238000 0 0 0 137280000 147620000 125920000 0 0 0 172380000 145490000 149540000 0 0 0 218560000 207680000 183290000 0 0 0 23746 63 23017 440974;440975;440976;440977;440978;440979;440980;440981;440982;440983;440984;440985;440986;440987;440988;440989;440990;440991;440992;440993;440994;440995;440996;440997 270720;270721;270722;270723;270724;270725;270726;270727;270728;270729;270730;270731;270732 270724 13 YSSEQFR Unmodified 915.40865 0.4086456 1616 P60240 rapA RNA polymerase-associated protein RapA yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1 1 1 1 1 1 13.731 13.978 2 0.00026773 3406 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 160.69 160.69 2716000000 6236000 11824000 6743700 0 0 0 0 0 0 281020000 222200000 238460000 0 0 0 526960000 455730000 491900000 0 0 0 154530000 153690000 166760000 23747 1616 23018 440998;440999;441000;441001;441002;441003;441004;441005;441006;441007;441008;441009;441010 270733;270734;270735;270736;270737;270738;270739;270740;270741 270735 9 YSSLIFTPR Unmodified 1082.576 0.57604528 1937 P77748 ydiJ Uncharacterized protein YdiJ yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 35.011 33.376 2 0.00085745 11619 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 99.442 90.048 40428000 0 9650900 0 3544800 3031700 2950300 5075600 3744500 5800300 0 0 0 0 2758600 2319600 0 0 0 0 0 0 1551600 0 0 23748 1937 23019 441011;441012;441013;441014;441015;441016;441017;441018;441019;441020 270742;270743;270744 270743 3 YSSNIALMCGSGCAGAHK Unmodified 1882.8124 0.81242229 147 P07003 poxB Pyruvate dehydrogenase [ubiquinone];Alpha-peptide yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 1 1 2 2 2 1 1 1 2 2 1 2 2 2 1 21.34 21.537 2;3 5.7244E-17 8449 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 200.21 200.21 1290000000 206470000 206190000 163400000 10911000 9981200 7608400 168710000 160430000 137210000 7092900 2902300 7748800 29955000 22626000 23957000 0 0 0 36465000 47085000 39932000 1349800 0 0 23749 147 23020 441021;441022;441023;441024;441025;441026;441027;441028;441029;441030;441031;441032;441033;441034;441035;441036;441037;441038;441039;441040;441041;441042;441043;441044;441045;441046;441047;441048;441049;441050;441051 270745;270746;270747;270748;270749;270750;270751;270752;270753;270754;270755;270756;270757;270758;270759;270760;270761;270762;270763;270764;270765 270761 20 YSSRPPEILLTHPLPESR Unmodified 2091.1113 0.11128837 1708 P66948 bepA Beta-barrel assembly-enhancing protease yes yes 0 0 1 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 2 2 2 2 2 2 1 2 2 1 1 2 1 2 2 2 2 1 29.98 28.539 3;4 0.0058217 9648 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 37.157 37.157 326870000 37611000 41312000 29884000 6654300 5445400 5722900 11940000 29977000 26011000 0 1680900 1579400 16246000 11878000 17797000 0 0 0 25959000 24685000 31014000 0 0 1470500 23750 1708 23021 441052;441053;441054;441055;441056;441057;441058;441059;441060;441061;441062;441063;441064;441065;441066;441067;441068;441069;441070;441071;441072;441073;441074;441075;441076;441077;441078;441079;441080;441081;441082 270766;270767;270768;270769 270769 1 YSSTISDPDTNVK Unmodified 1425.6624 0.66235368 937 P0AFG3 sucA 2-oxoglutarate dehydrogenase E1 component yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.749 18.208 2 6.7592E-09 6735 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 166.97 164.82 2393800000 166210000 138680000 140180000 6201400 5831500 5839700 127900000 119170000 111460000 5335000 3750900 3964500 167490000 168180000 159670000 0 1656100 2768300 313550000 341260000 362430000 12827000 14750000 14691000 23751 937 23022 441083;441084;441085;441086;441087;441088;441089;441090;441091;441092;441093;441094;441095;441096;441097;441098;441099;441100;441101;441102;441103;441104;441105 270770;270771;270772;270773;270774;270775;270776;270777;270778;270779;270780;270781;270782;270783;270784;270785;270786;270787;270788;270789;270790 270775 21 YSSWVSYYEGIK Unmodified 1480.6874 0.68744622 1645 P62517 mdoH Glucans biosynthesis glucosyltransferase H yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 42.144 40.165 2 0.0013692 16455 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 72.434 68.28 51515000 0 6481800 2055900 0 0 0 5506500 4753000 5244400 3171300 2974600 2532800 4727400 0 7989500 0 0 0 0 0 6078200 0 0 0 23752 1645 23023 441106;441107;441108;441109;441110;441111;441112;441113;441114;441115;441116 270791 270791 1 YSTEMMNVISAGLDK Unmodified 1657.7691 0.76914371 477 P0A903 bamC Outer membrane protein assembly factor BamC yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 45.964 44.224 2 0.00015548 21598 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 100.19 89.815 75793000 0 0 6040900 1273000 0 0 0 0 4088400 3705900 4312200 3936800 0 7445400 0 0 0 0 11141000 12079000 10711000 3596500 3926500 3536100 23753 477 23024 441117;441118;441119;441120;441121;441122;441123;441124;441125;441126;441127;441128;441129;441130 270792;270793;270794;270795 270792 4 YSTYDDAVGVTSSMLK Unmodified 1735.7975 0.79746695 1419 P33343 yehD Uncharacterized fimbrial-like protein YehD yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 40.169 38.404 2 3.4245E-10 18045 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 147.24 129.77 112400000 0 0 0 0 0 0 19940000 22196000 20333000 0 0 0 16418000 10534000 11438000 0 0 0 0 11541000 0 0 0 0 23754 1419 23025 441131;441132;441133;441134;441135;441136;441137 270796;270797;270798;270799;270800;270801;270802 270800 7 YSVEPNGMR Unmodified 1051.4757 0.4756793 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 16.978 17.604 2 0.00034546 6516 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 113.89 106.2 63767000 9738200 9608200 11516000 0 0 0 11121000 10063000 11721000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23755 1831 23026 441138;441139;441140;441141;441142;441143 270803;270804;270805 270803 3 YSVMTSVK Unmodified 913.4579 0.45790397 1421 P33363 bglX Periplasmic beta-glucosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 18.466 18.995 2 0.0038108 7096 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 89.296 78.227 248170000 12312000 11091000 11508000 0 0 0 25801000 20878000 23245000 0 0 337850 19905000 16281000 14621000 0 0 0 27720000 34940000 29175000 0 357040 0 23756 1421 23027 441144;441145;441146;441147;441148;441149;441150;441151;441152;441153;441154;441155;441156;441157 270806;270807;270808;270809;270810;270811;270812;270813;270814;270815;270816;270817 270810 12 YSVPGVTLISPPPHHDIYSIEDLAQLIFDLK Unmodified 3476.8232 0.82315842 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 55.691 54.231 4 5.0706E-07 26757 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 73.13 71.468 676310000 132090000 109320000 113740000 0 0 854410 42984000 43269000 49098000 0 0 0 28866000 31049000 28655000 0 0 0 34135000 30535000 31712000 0 0 0 23757 218 23028 441158;441159;441160;441161;441162;441163;441164;441165;441166;441167;441168;441169;441170 270818;270819;270820;270821;270822;270823 270819 6 YSVSDMINR Unmodified 1083.5019 0.50189405 320 P0A796 pfkA ATP-dependent 6-phosphofructokinase isozyme 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29.284 27.86 2 8.9115E-06 12825 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 192.11 188.17 3899600000 339700000 338490000 372580000 1458800 1773200 1802000 444470000 447690000 438750000 2825300 0 1921500 253330000 232450000 220230000 0 0 0 243060000 278160000 279810000 0 0 1084700 23758 320 23029 441171;441172;441173;441174;441175;441176;441177;441178;441179;441180;441181;441182;441183;441184;441185;441186;441187;441188 270824;270825;270826;270827;270828;270829;270830;270831;270832;270833;270834;270835 270831 12 YSYDMLGEAALTAADAQAYMVSYQQAIHAIGK Unmodified 3449.6272 0.62717751 215 P09546 putA Bifunctional protein PutA;Proline dehydrogenase;Delta-1-pyrroline-5-carboxylate dehydrogenase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.12 53.673 3 1.2155E-10 26428 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 108.72 108.19 306170000 0 0 0 6687300 8600700 7928600 14522000 15317000 0 15698000 0 13972000 11538000 12707000 14177000 0 0 0 36040000 30516000 34739000 27746000 29401000 26578000 23759 215 23030 441189;441190;441191;441192;441193;441194;441195;441196;441197;441198;441199;441200;441201;441202;441203;441204 270836;270837;270838 270837 3 YSYEASLMALHDR Oxidation (M) 1570.7086 0.70859237 212;1559 P09373;P42632 pflB;tdcE Formate acetyltransferase 1;PFL-like enzyme TdcE no no 0 1 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 4 4 4 4 4 3 4 3 4 27.571 26.386 2;3 5.7462E-07 12420 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 147.62 143.32 701890000 30844000 14089000 15214000 0 0 0 134220000 125230000 114850000 0 0 0 60438000 47656000 25558000 0 0 0 53383000 37796000 42608000 0 0 0 23760 212;1559 23031 441205;441206;441207;441208;441209;441210;441211;441212;441213;441214;441215;441216;441217;441218;441219;441220;441221;441222;441223;441224;441225;441226;441227;441228;441229;441230;441231;441232;441233;441234;441235;441236;441237;441238;441239;441240;441241;441242;441243;441244;441245 270839;270840;270841;270842;270843;270844;270845;270846;270847;270848;270849;270850;270851;270852;270853;270854;270855;270856;270857;270858;270859;270860 270844 83 21 YSYEASLMALHDR Unmodified 1554.7137 0.71367774 212;1559 P09373;P42632 pflB;tdcE Formate acetyltransferase 1;PFL-like enzyme TdcE no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 3 3 3 4 3 1 2 4 4 1 1 1 2 3 4 1 31.582 30.273 2;3 4.2823E-31 13354 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 248.88 244.58 25272000000 1104500000 1026700000 973620000 0 0 0 3514500000 3208400000 3603500000 2611100 0 0 2208300000 2342500000 2095500000 1530000 1576200 1785000 1773000000 1694900000 1717600000 0 0 1046600 23761 212;1559 23031 441246;441247;441248;441249;441250;441251;441252;441253;441254;441255;441256;441257;441258;441259;441260;441261;441262;441263;441264;441265;441266;441267;441268;441269;441270;441271;441272;441273;441274;441275;441276;441277;441278;441279;441280;441281;441282;441283;441284;441285;441286;441287 270861;270862;270863;270864;270865;270866;270867;270868;270869;270870;270871;270872;270873;270874;270875;270876;270877;270878;270879;270880;270881;270882;270883;270884;270885;270886;270887;270888;270889;270890 270885 27 YSYEASLMALHDRDVIR Unmodified 2037.9942 0.9942097 212 P09373 pflB Formate acetyltransferase 1 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1 2 2 2 2 2 1 2 2 1 2 2 2 2 2 1 33.706 32.018 3;4 3.8218E-09 15606 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 125.89 120.89 1309000000 52658000 47932000 35618000 1495700 2032700 1321200 183610000 174910000 173710000 10391000 12599000 5825400 101580000 114720000 50191000 0 0 0 102580000 111720000 110830000 5912800 6375100 3020000 23762 212 23032 441288;441289;441290;441291;441292;441293;441294;441295;441296;441297;441298;441299;441300;441301;441302;441303;441304;441305;441306;441307;441308;441309;441310;441311;441312;441313;441314;441315;441316;441317;441318;441319;441320;441321;441322 270891;270892;270893;270894;270895;270896;270897;270898;270899;270900;270901;270902;270903;270904;270905 270892 14 YSYVDENGETK Unmodified 1303.5568 0.55682598 728 P0ACF8 hns DNA-binding protein H-NS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.161 15.717 2 2.6632E-26 4058 B210125_13_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep03 250.12 250.12 6228300000 628630000 532460000 554750000 5016700 4662800 5217900 392640000 350350000 334390000 20745000 19415000 18005000 463500000 440600000 576500000 217950000 167140000 173830000 433850000 402340000 473940000 4518000 4108000 3775500 23763 728 23033 441323;441324;441325;441326;441327;441328;441329;441330;441331;441332;441333;441334;441335;441336;441337;441338;441339;441340;441341;441342;441343;441344;441345;441346 270906;270907;270908;270909;270910;270911;270912;270913;270914;270915;270916;270917;270918;270919;270920;270921;270922;270923;270924;270925;270926;270927;270928 270908 22 YSYVMHLVSR Unmodified 1253.6227 0.62267789 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 26.28 25.475 2 0.0010701 11322 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 86.898 84.219 38037000 14652000 13264000 10121000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23764 46 23034 441347;441348;441349 270929;270930;270931 270931 1 YTAAITGAEGK Unmodified 1080.5451 0.54513908 66 P02358 rpsF 30S ribosomal protein S6;30S ribosomal protein S6, fully modified isoform;30S ribosomal protein S6, non-modified isoform yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.292 15.852 2 3.9277E-10 4047 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 182.65 179.3 5117900000 501470000 605260000 539660000 24333000 21888000 21048000 277010000 270230000 240710000 63538000 60147000 48459000 317430000 291590000 268350000 42236000 35832000 39098000 476600000 450670000 425430000 39304000 30579000 26991000 23765 66 23035 441350;441351;441352;441353;441354;441355;441356;441357;441358;441359;441360;441361;441362;441363;441364;441365;441366;441367;441368;441369;441370;441371;441372;441373 270932;270933;270934;270935;270936;270937;270938;270939;270940;270941;270942;270943;270944;270945;270946;270947;270948;270949;270950;270951;270952;270953;270954;270955;270956;270957 270933 26 YTADDAEEMIGK Unmodified 1341.5758 0.57584686 1638 P61320 lolB Outer-membrane lipoprotein LolB yes yes 0 0 0 By matching By MS/MS By matching 1 1 1 28.708 26.858 2 0.14696 10084 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 39.179 23.041 7757300 0 0 0 1486300 0 0 0 0 0 0 3110900 3160000 0 0 0 0 0 0 0 0 0 0 0 0 23766 1638 23036 441374;441375;441376 270958 270958 0 YTAGSGDPLEHESVK Unmodified 1588.7369 0.73691561 1360 P31120 glmM Phosphoglucosamine mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 16.286 17.131 2;3 3.7634E-27 6088 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 238.01 216.44 2401400000 149240000 145380000 148580000 940140 1058800 775920 224410000 228110000 229780000 0 0 0 215430000 173260000 183620000 0 0 0 229650000 255420000 215780000 0 0 0 23767 1360 23037 441377;441378;441379;441380;441381;441382;441383;441384;441385;441386;441387;441388;441389;441390;441391;441392;441393;441394;441395;441396;441397;441398;441399;441400;441401;441402;441403 270959;270960;270961;270962;270963;270964;270965;270966;270967;270968;270969;270970;270971;270972;270973;270974;270975;270976;270977;270978;270979;270980;270981;270982 270961 24 YTCPQYK Unmodified 958.42185 0.42185282 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 12.374 13.227 2 0.0022218 3833 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 116.11 116.11 912670000 74310000 63984000 56002000 0 0 756250 92162000 85219000 75035000 0 0 0 69642000 75804000 70402000 0 0 0 89864000 82455000 77035000 0 0 0 23768 170 23038 441404;441405;441406;441407;441408;441409;441410;441411;441412;441413;441414;441415;441416 270983;270984;270985;270986;270987;270988;270989;270990;270991;270992;270993 270989 11 YTDESEQ Unmodified 870.32431 0.32430684 697 P0AC38 aspA Aspartate ammonia-lyase yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 10.792 11.612 1 0.0016121 2807 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 143.97 143.97 155710000 11377000 9263300 10725000 0 0 0 28244000 0 0 0 0 0 21770000 20064000 23239000 0 0 0 16023000 15010000 0 0 0 0 23769 697 23039 441417;441418;441419;441420;441421;441422;441423;441424;441425 270994 270994 1 YTDTPAGAALVAAGPK Unmodified 1501.7777 0.77765821 1195 P22259 pckA Phosphoenolpyruvate carboxykinase [ATP] yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 29.487 28.231 2;3 7.5087E-10 13433 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 170.52 165.82 4953200000 616960000 572400000 579900000 0 0 0 394040000 386110000 360620000 0 0 0 357400000 329620000 287000000 0 0 0 350560000 353500000 365110000 0 0 0 23770 1195 23040 441426;441427;441428;441429;441430;441431;441432;441433;441434;441435;441436;441437;441438;441439;441440;441441;441442;441443;441444;441445;441446;441447;441448;441449 270995;270996;270997;270998;270999;271000;271001;271002;271003;271004;271005;271006;271007;271008;271009;271010;271011;271012;271013;271014;271015 270995 21 YTEADQYGTTVIAGEDAQK Unmodified 2058.9382 0.93819419 606 P0AAQ2 yajD Uncharacterized protein YajD yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 28.242 27.02 2 1.5313E-17 12378 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 214.23 206.81 106700000 10651000 8110100 6599800 0 0 0 10032000 14438000 11555000 0 0 0 8279100 6116400 6922400 0 0 0 7575000 7544100 8878800 0 0 0 23771 606 23041 441450;441451;441452;441453;441454;441455;441456;441457;441458;441459;441460;441461 271016;271017;271018 271016 3 YTEALQQIGSSSNSK Unmodified 1611.774 0.77402939 576 P0AA53 qmcA Protein QmcA yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.3 21.4 2 7.9923E-12 8930 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 174.24 161.67 86091000 4770000 4609600 3487300 1403700 1406100 1834600 6884100 8196500 10173000 2080100 4630800 5369500 5535900 5287800 4248100 0 0 0 4593800 4549200 3381600 1332800 1200800 1116000 23772 576 23042 441462;441463;441464;441465;441466;441467;441468;441469;441470;441471;441472;441473;441474;441475;441476;441477;441478;441479;441480;441481;441482 271019;271020;271021;271022 271021 4 YTELLNLVNEEILQLQEK Unmodified 2188.1627 0.16271482 656 P0ABH0 ftsA Cell division protein FtsA yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 55.508 54.05 3 0.0037818 19915 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 52.644 50.247 224590000 14636000 14239000 10819000 9066000 0 6675100 15181000 15226000 17396000 10895000 0 0 14471000 13649000 13857000 0 0 0 15388000 22128000 21015000 9952000 0 0 23773 656 23043 441483;441484;441485;441486;441487;441488;441489;441490;441491;441492;441493;441494;441495;441496;441497;441498 271023 271023 1 YTENGPEGLVTGK Unmodified 1363.662 0.66195975 1551 P41407 azoR FMN-dependent NADH-azoreductase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 23.513 22.719 2 7.9323E-07 10069 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 139.86 127.81 148270000 0 0 0 0 0 0 20509000 19842000 19853000 0 0 0 11071000 12435000 12942000 0 0 0 16179000 18102000 17336000 0 0 0 23774 1551 23044 441499;441500;441501;441502;441503;441504;441505;441506;441507 271024;271025;271026;271027;271028;271029;271030;271031 271025 8 YTFADVASYR Unmodified 1191.556 0.55603811 1401 P32705 actP Cation/acetate symporter ActP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 34.647 33.217 2 4.0755E-05 15901 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 169.09 158.4 114810000 37622000 32435000 33390000 3623400 4279300 3462200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23775 1401 23045 441508;441509;441510;441511;441512;441513 271032;271033;271034;271035 271033 4 YTFCTPGHMGGTAFQK Unmodified 1801.7916 0.79161049 520 P0A9H3 cadA Lysine decarboxylase, inducible yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 1 1 1 2 2 2 1 1 27.191 25.898 2;3 2.5436E-13 12106 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 167.3 167.3 377110000 0 4257300 5434900 0 0 0 83310000 74210000 86974000 1199200 1473800 1203600 40685000 34509000 39838000 674150 0 0 3339700 0 0 0 0 0 23776 520 23046 441514;441515;441516;441517;441518;441519;441520;441521;441522;441523;441524;441525;441526;441527;441528;441529;441530;441531;441532 271036;271037;271038;271039;271040;271041;271042;271043;271044;271045;271046 271039 11 YTFDGETVTLSPSQGVNQLHGGPEGFDK Unmodified 2979.3886 0.38864502 507 P0A9C3 galM Aldose 1-epimerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.341 39.667 3 4.1405E-41 19670 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 205.77 203.14 800010000 130040000 109610000 89226000 0 0 0 58169000 59572000 73255000 0 0 0 35014000 35692000 35474000 0 0 0 57460000 60465000 56030000 0 0 0 23777 507 23047 441533;441534;441535;441536;441537;441538;441539;441540;441541;441542;441543;441544 271047;271048;271049;271050;271051;271052;271053;271054;271055;271056;271057;271058 271048 12 YTGHLIDFNVR Unmodified 1333.6779 0.67788459 205 P09152 narG Respiratory nitrate reductase 1 alpha chain yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 2 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 30.26 28.783 2;3 0.00015127 13423 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 115.82 86.867 1439600000 42865000 26973000 33535000 5328100 4980200 6411500 123260000 116060000 109140000 38506000 32354000 30677000 72365000 60291000 64040000 7099800 9815600 8769700 119070000 142830000 120630000 104230000 83675000 76685000 23778 205 23048 441545;441546;441547;441548;441549;441550;441551;441552;441553;441554;441555;441556;441557;441558;441559;441560;441561;441562;441563;441564;441565;441566;441567;441568;441569;441570;441571;441572;441573;441574;441575;441576;441577;441578;441579;441580;441581;441582 271059;271060;271061;271062;271063;271064;271065;271066;271067;271068 271066 10 YTGNKDAAAAVGK Unmodified 1264.6412 0.64116473 1031 P0C018 rplR 50S ribosomal protein L18 yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 1 1 2 1 2 2 2 11.305 11.783 2;3 4.4829E-17 2417 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 220.5 196.98 322810000 0 0 0 38715000 45201000 41778000 0 0 0 28483000 22155000 27828000 0 0 3254500 9402000 9112600 10608000 0 2564800 0 28601000 31968000 23142000 23779 1031 23049 441583;441584;441585;441586;441587;441588;441589;441590;441591;441592;441593;441594;441595;441596;441597;441598;441599;441600;441601;441602;441603;441604;441605;441606 271069;271070;271071;271072;271073;271074;271075;271076;271077;271078;271079;271080 271075 12 YTHFDAGTHGFNAQTPMWEK Unmodified 2337.0273 0.027300743 468 P0A8W8 yfbU UPF0304 protein YfbU yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By MS/MS 2 2 2 3 3 3 3 1 3 3 3 2 29.727 28.376 2;3;4 1.2506E-37 13126 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 287.01 282.12 1825800000 98188000 105440000 87522000 0 0 0 286570000 283040000 282870000 0 0 0 128100000 34106000 105760000 0 0 0 138470000 141160000 134550000 0 0 0 23780 468 23050 441607;441608;441609;441610;441611;441612;441613;441614;441615;441616;441617;441618;441619;441620;441621;441622;441623;441624;441625;441626;441627;441628;441629;441630;441631;441632;441633;441634;441635;441636 271081;271082;271083;271084;271085;271086;271087;271088;271089;271090;271091;271092;271093 271090 13 YTIDLTER Unmodified 1009.508 0.50802529 1662 P63284 clpB Chaperone protein ClpB yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27.874 26.734 2 2.9396E-06 11724 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 182.13 153.61 912580000 135580000 128470000 104640000 2598200 2965500 2593100 100600000 0 96687000 4736700 5109100 5965200 45330000 46218000 53056000 1844700 999590 1521200 58360000 54918000 59108000 0 1281500 0 23781 1662 23051 441637;441638;441639;441640;441641;441642;441643;441644;441645;441646;441647;441648;441649;441650;441651;441652;441653;441654;441655;441656;441657 271094;271095;271096;271097;271098;271099;271100;271101;271102;271103;271104;271105;271106;271107 271105 14 YTITFSR Unmodified 886.45487 0.45486751 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 26.448 25.308 2 0.0020271 9363 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 119.57 119.57 54521000 0 0 0 990730 1489400 1125300 0 0 0 10929000 8394500 7164900 0 0 0 2047100 956790 1467400 0 0 0 7655300 6162000 6138800 23782 1408 23052 441658;441659;441660;441661;441662;441663;441664;441665;441666;441667;441668;441669 271108 271108 1 YTITFSRDEDKLHAPDNAWVQQTR Unmodified 2890.3998 0.39981883 1408 P33136 mdoG Glucans biosynthesis protein G yes yes 0 0 2 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 32.089 30.156 5 0.12485 11883 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 25.803 23.026 22865000 0 0 0 0 1859000 650650 0 0 0 6945100 0 7717400 0 0 0 0 0 0 0 0 0 2943300 2749800 0 23783 1408 23053 441670;441671;441672;441673;441674;441675 271109 271109 1 YTLAGTEVSALLGR Unmodified 1449.7827 0.78274359 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 46.58 45.218 2;3 3.9179E-15 16153 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 241.03 235 9427900000 263400000 242250000 219200000 57341000 70200000 53381000 692010000 708820000 701710000 315090000 286480000 289990000 788070000 677770000 728230000 83728000 85291000 78128000 845510000 844200000 780730000 220370000 198040000 197980000 23784 646 23054 441676;441677;441678;441679;441680;441681;441682;441683;441684;441685;441686;441687;441688;441689;441690;441691;441692;441693;441694;441695;441696;441697;441698;441699;441700;441701;441702;441703;441704;441705;441706;441707;441708;441709;441710;441711;441712;441713;441714;441715;441716;441717;441718;441719;441720;441721;441722;441723 271110;271111;271112;271113;271114;271115;271116;271117;271118;271119;271120;271121;271122;271123;271124;271125;271126;271127;271128;271129;271130;271131;271132;271133;271134;271135;271136;271137;271138;271139;271140;271141;271142;271143;271144;271145;271146;271147;271148;271149;271150;271151;271152;271153;271154;271155;271156 271141 45 YTLGAVNSVIQR Unmodified 1319.7197 0.7197494 130 P06721 metC Cystathionine beta-lyase MetC yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.3 31.837 2 8.813E-09 15517 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 175.73 155.43 273610000 33878000 32231000 24847000 302610 0 850600 27271000 27292000 27232000 0 0 0 14193000 12895000 13637000 0 0 0 20013000 20689000 18278000 0 0 0 23785 130 23055 441724;441725;441726;441727;441728;441729;441730;441731;441732;441733;441734;441735;441736;441737 271157;271158;271159 271157 3 YTLHSQGK Unmodified 932.47158 0.4715802 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10.692 11.216 2 0.00010979 2606 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.2 142.72 649980000 95253000 82562000 94229000 9127500 5216400 7420600 54027000 46122000 43394000 11881000 14401000 8982300 0 0 0 5854700 3360000 4141600 74151000 71762000 0 6648300 5873400 5579200 23786 1210 23056 441738;441739;441740;441741;441742;441743;441744;441745;441746;441747;441748;441749;441750;441751;441752;441753;441754;441755;441756;441757 271160;271161;271162;271163;271164;271165;271166;271167;271168;271169;271170;271171;271172;271173;271174;271175;271176;271177;271178 271178 16 YTLPELLDNSQQLIHEAR Unmodified 2139.096 0.096032235 433 P0A8I3 yaaA UPF0246 protein YaaA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.653 47.592 3 1.1483E-14 23528 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 155.1 152.04 417840000 32124000 35651000 33715000 0 0 0 35865000 29613000 29526000 0 0 0 25206000 25910000 27529000 12843000 9157600 18482000 33801000 34331000 34086000 0 0 0 23787 433 23057 441758;441759;441760;441761;441762;441763;441764;441765;441766;441767;441768;441769;441770;441771;441772 271179;271180;271181;271182;271183;271184;271185;271186;271187;271188;271189;271190;271191;271192;271193 271184 15 YTLSLMVLER Unmodified 1223.6584 0.6583947 1273 P25746 hflD High frequency lysogenization protein HflD yes yes 0 0 0 By MS/MS 1 47.804 46.198 2 0.0017797 18277 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 82.749 74.217 8139000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8139000 23788 1273 23058 441773 271194 271194 1 YTLTCTYNDLASVR Unmodified 1675.7876 0.78757097 1227 P23893 hemL Glutamate-1-semialdehyde 2,1-aminomutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36.919 35.312 2 1.206E-26 16895 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 249.5 243.66 1647700000 123780000 122140000 113820000 3115600 4445800 5491100 131220000 119970000 120790000 23501000 24010000 25361000 112470000 108200000 118090000 11009000 6424000 7059200 147480000 150100000 139120000 9959800 10663000 9545300 23789 1227 23059 441774;441775;441776;441777;441778;441779;441780;441781;441782;441783;441784;441785;441786;441787;441788;441789;441790;441791;441792;441793;441794;441795;441796;441797 271195;271196;271197;271198;271199;271200;271201;271202;271203;271204;271205;271206;271207;271208;271209;271210;271211;271212;271213;271214;271215;271216 271209 22 YTPDVVENICGTPK Unmodified 1591.7552 0.75520821 1393 P32176 fdoG Formate dehydrogenase-O major subunit no no 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.167 29.57 2 0.00059103 10027 B210127_17_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep03 84.718 82.098 164100000 12813000 9572200 12351000 3547200 4024200 3716400 9869200 9700100 11241000 3899800 3834600 3263500 10092000 9132500 9568900 0 0 0 12705000 13557000 13326000 2389400 2756300 2738100 23790 1393 23060 441798;441799;441800;441801;441802;441803;441804;441805;441806;441807;441808;441809;441810;441811;441812;441813;441814;441815;441816;441817;441818 271217;271218;271219;271220;271221;271222;271223;271224 271224 8 YTPNVADATEAQIQQATK Unmodified 1947.9538 0.95378467 664 P0ABJ9 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 3 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 33.597 32.133 2;3 1.5256E-17 15349 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 198.74 186.48 1740400000 58869000 58824000 41256000 5006800 5634700 4077800 253770000 244970000 229360000 43984000 45331000 41969000 143680000 120040000 121160000 7491600 6149200 6927100 92743000 89619000 93116000 8788600 9579500 8031100 23791 664 23061 441819;441820;441821;441822;441823;441824;441825;441826;441827;441828;441829;441830;441831;441832;441833;441834;441835;441836;441837;441838;441839;441840;441841;441842;441843;441844;441845;441846;441847;441848;441849;441850;441851;441852;441853;441854;441855 271225;271226;271227;271228;271229;271230;271231;271232;271233;271234;271235;271236;271237;271238;271239;271240;271241;271242;271243;271244;271245;271246;271247;271248;271249;271250;271251 271245 27 YTPQDCHTLNNDGSLR Unmodified 1889.8326 0.83262368 1130 P16690 phnN Ribose 1,5-bisphosphate phosphokinase PhnN yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 16.604 17.033 3 0.0039548 4506 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 56.514 56.514 24140000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3197400 3418300 2284500 4374900 5338600 5525700 0 0 0 23792 1130 23062 441856;441857;441858;441859;441860;441861 271252;271253;271254 271253 3 YTQIAPTSR Unmodified 1035.5349 0.53490874 1376 P31677 otsA Alpha,alpha-trehalose-phosphate synthase [UDP-forming] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 14.156 14.746 2 2.34E-08 4730 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 167.24 119.39 205150000 0 89905000 93380000 4062400 3070800 3411700 3165500 0 0 2455100 2428000 2498400 0 0 0 0 0 0 0 0 0 0 776710 0 23793 1376 23063 441862;441863;441864;441865;441866;441867;441868;441869;441870;441871;441872 271255;271256;271257;271258;271259;271260 271258 5 YTQLIER Unmodified 921.49198 0.4919813 823 P0ADZ4 rpsO 30S ribosomal protein S15 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 17.756 18.194 2 0.00021051 4966 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 165.11 131.56 6095500000 592690000 598710000 542760000 25557000 21312000 24698000 0 295930000 0 71505000 77141000 69153000 292640000 266350000 289740000 486750000 510470000 531010000 418100000 459280000 395360000 43731000 44632000 37981000 23794 823 23064 441873;441874;441875;441876;441877;441878;441879;441880;441881;441882;441883;441884;441885;441886;441887;441888;441889;441890;441891;441892;441893;441894 271261;271262;271263;271264;271265;271266;271267;271268;271269;271270;271271;271272;271273;271274;271275;271276 271272 16 YTQQHESDELILPPLAEA Unmodified 2053.0004 0.0004005156 1549 P40191 pdxK Pyridoxine kinase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 48.27 46.923 2 1.4856E-13 22051 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 142.83 132.5 82344000 11841000 7301800 6993600 0 0 0 10151000 10936000 8479100 0 0 0 6237600 3500700 3981700 0 0 0 7037100 5883900 0 0 0 0 23795 1549 23065 441895;441896;441897;441898;441899;441900;441901;441902;441903;441904;441905 271277;271278;271279;271280;271281;271282 271280 6 YTSPDPCAGVADK Unmodified 1379.6027 0.60273031 948 P0AFK0 pmbA Metalloprotease PmbA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 17.271 17.953 2 3.77E-05 6570 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 100.55 96.255 469930000 46473000 48361000 54466000 0 0 0 38839000 37187000 42034000 0 0 0 30726000 32002000 30579000 0 0 0 35895000 37815000 35555000 0 0 0 23796 948 23066 441906;441907;441908;441909;441910;441911;441912;441913;441914;441915;441916;441917 271283;271284;271285;271286;271287;271288;271289;271290;271291;271292;271293;271294 271285 12 YTSSVVIDESVIQGIK Unmodified 1736.9196 0.919631 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 3 3 3 3 2 2 2 42.926 41.342 2;3 1.493E-10 20104 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 191.52 183.11 3505100000 145820000 130810000 124950000 572150 1101800 917560 360950000 317110000 316690000 0 0 0 403060000 387890000 438870000 0 0 0 293440000 300800000 282150000 0 0 0 23797 224 23067 441918;441919;441920;441921;441922;441923;441924;441925;441926;441927;441928;441929;441930;441931;441932;441933;441934;441935;441936;441937;441938;441939;441940;441941;441942;441943;441944;441945;441946;441947;441948 271295;271296;271297;271298;271299;271300;271301;271302;271303;271304;271305;271306;271307;271308;271309;271310;271311;271312;271313;271314;271315;271316;271317;271318;271319;271320;271321;271322;271323 271313 28 YTSVDQLK Unmodified 952.48656 0.48656157 1349 P30859 artI Putative ABC transporter arginine-binding protein 2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 16.021 16.836 2 0.0019937 5936 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 104.21 81.717 2778300000 338190000 354820000 289710000 0 0 0 228800000 244000000 203870000 0 0 0 195550000 158380000 165850000 0 0 0 217970000 198180000 183020000 0 0 0 23798 1349 23068 441949;441950;441951;441952;441953;441954;441955;441956;441957;441958;441959;441960 271324;271325;271326;271327;271328;271329;271330;271331;271332;271333;271334 271325 11 YTTEPDGSNWLEVHEPLSR Unmodified 2229.0338 0.033825909 1511 P39176 erfK Probable L,D-transpeptidase ErfK/SrfK yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 37.482 35.636 3 0.0040783 17728 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 50.425 47.137 72997000 0 14025000 0 0 0 0 16380000 18609000 15188000 0 0 0 0 4129200 0 0 0 0 4666300 0 0 0 0 0 23799 1511 23069 441961;441962;441963;441964;441965;441966 271335 271335 1 YTTHEQFK Unmodified 1052.4927 0.49270958 99 P04982 rbsD D-ribose pyranase yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 11.101 11.919 2 0.00092366 2866 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 117.4 114.14 111140000 9684000 0 10393000 0 0 0 13784000 11638000 8638400 0 0 0 14085000 0 9994600 0 0 0 12423000 10686000 9814200 0 0 0 23800 99 23070 441967;441968;441969;441970;441971;441972;441973;441974;441975;441976;441977 271336;271337;271338;271339;271340 271339 5 YTTYIPVQDPK Unmodified 1323.6711 0.67106787 595 P0AAI3 ftsH ATP-dependent zinc metalloprotease FtsH yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28.01 26.796 2 8.0392E-05 12148 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 123.6 119.44 942430000 25019000 23117000 25292000 15371000 14242000 15323000 88410000 86266000 84148000 33559000 44021000 39561000 50647000 44855000 42191000 8182800 4984200 7231900 74798000 67945000 62390000 28098000 30759000 26017000 23801 595 23071 441978;441979;441980;441981;441982;441983;441984;441985;441986;441987;441988;441989;441990;441991;441992;441993;441994;441995;441996;441997;441998;441999;442000;442001 271341;271342;271343;271344;271345;271346;271347;271348;271349;271350;271351;271352;271353;271354;271355;271356;271357;271358;271359;271360;271361;271362;271363 271359 23 YTVTLNGESNHAGTTPMGYR Unmodified 2167.9957 0.99566626 1904 P77425 allC Allantoate amidohydrolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS 1 1 1 25.356 24.204 3 9.9353E-05 7960 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 69.148 64.797 15115000 0 0 0 5906900 4111000 5097200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23802 1904 23072 442002;442003;442004 271364;271365;271366 271364 3 YTVTLPDGTK Unmodified 1093.5655 0.56554017 1829 P76177 ydgH Protein YdgH yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26.135 24.928 2 0.00049622 10743 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 113.62 106.73 316200000 48269000 43740000 41811000 0 712950 981950 23639000 23725000 0 0 1424600 1532000 16183000 19173000 18222000 0 0 0 25279000 26189000 25321000 0 0 0 23803 1829 23073 442005;442006;442007;442008;442009;442010;442011;442012;442013;442014;442015;442016;442017;442018;442019 271367;271368;271369;271370;271371 271370 4 YTVTLPDGTKVEELNK Unmodified 1805.9411 0.94109472 1829 P76177 ydgH Protein YdgH yes yes 0 0 1 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.61 32.18 3 0.000127 12686 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 67.326 66.22 128680000 0 0 6818700 4955300 6899800 4462000 5678600 0 0 14691000 11137000 11696000 3149300 6969300 2955000 4522800 5091000 3934200 6956500 7271100 8074000 8307100 0 5110100 23804 1829 23074 442020;442021;442022;442023;442024;442025;442026;442027;442028;442029;442030;442031;442032;442033;442034;442035;442036;442037;442038 271372;271373;271374;271375;271376;271377;271378;271379;271380;271381;271382;271383 271375 12 YVADLTK Unmodified 808.43307 0.43306943 46 P00895 trpE Anthranilate synthase component 1 yes yes 0 0 0 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 15.547 16.378 2 0.062465 4132 B210127_16_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep02 60.76 30.091 110360000 37795000 34581000 32299000 0 3291500 2395500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23805 46 23075 442039;442040;442041;442042;442043 271384 271384 1 YVAEAITEEWR Unmodified 1365.6565 0.65648044 797 P0ADP7 ubiJ Ubiquinone biosynthesis protein UbiJ yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 36.708 34.691 2 0.00011748 16991 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 116.52 103.56 76212000 0 0 0 3641800 3178300 2697500 19892000 18440000 0 4308500 4313300 4647400 0 0 9604400 0 0 0 0 0 0 3095100 2393400 0 23806 797 23076 442044;442045;442046;442047;442048;442049;442050;442051;442052;442053;442054 271385;271386 271386 1 YVAFVLMGESFLR Unmodified 1530.7905 0.7904715 835 P0AE60 cedA Cell division activator CedA yes yes 0 0 0 By MS/MS By matching By matching 1 1 1 54.767 54.823 2 6.8694E-13 21415 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 199.11 179.76 178780000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 63758000 55305000 59715000 0 0 0 0 0 0 23807 835 23077 442055;442056;442057 271387 271387 1 YVAGVLGPTNR Unmodified 1145.6193 0.61930707 1083 P13009 metH Methionine synthase yes yes 0 0 0 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.339 22.603 2 1.2842E-05 8215 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 144.09 137.19 176400000 23082000 18760000 17999000 2289700 3040100 3194600 0 0 0 8074700 6460000 6405800 0 10945000 12373000 1803700 0 1284000 18163000 16665000 18815000 1995200 1869100 3179700 23808 1083 23078 442058;442059;442060;442061;442062;442063;442064;442065;442066;442067;442068;442069;442070;442071;442072;442073;442074;442075;442076 271388;271389;271390;271391;271392;271393;271394;271395;271396 271388 6 YVALQFLR Unmodified 1008.5757 0.57565135 696;1097 P0AC33;P14407 fumA;fumB Fumarate hydratase class I, aerobic;Fumarate hydratase class I, anaerobic no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 40.753 39.088 2 0.0001858 18097 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 153.67 139.69 1257500000 164920000 159300000 160190000 0 0 0 95386000 80345000 83379000 0 0 0 85632000 79132000 72435000 0 0 0 90128000 94108000 92538000 0 0 0 23809 696;1097 23079 442077;442078;442079;442080;442081;442082;442083;442084;442085;442086;442087;442088 271397;271398;271399;271400;271401;271402;271403;271404;271405;271406;271407;271408 271408 12 YVAVDPEGKPR Unmodified 1229.6404 0.64043645 474 P0A8Z0 yciA Acyl-CoA thioester hydrolase YciA yes yes 0 0 1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 2 2 2 2 2 2 13.068 13.954 2;3 0.00030395 4214 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 107.57 70.018 522720000 0 49991000 21792000 0 0 0 21226000 50189000 54528000 0 0 0 50401000 57237000 53038000 0 0 0 52267000 51945000 60103000 0 0 0 23810 474 23080 442089;442090;442091;442092;442093;442094;442095;442096;442097;442098;442099;442100;442101;442102;442103;442104;442105;442106;442107;442108 271409;271410;271411;271412;271413;271414;271415;271416;271417;271418 271413 10 YVDEFVR Unmodified 926.44978 0.44978213 828 P0AE12 amn AMP nucleosidase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 23.305 22.584 2 0.001505 9983 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 128.82 122.43 804840000 76726000 57781000 63666000 0 0 0 62674000 63808000 54996000 0 0 0 62655000 54322000 57991000 0 0 0 74079000 89839000 86306000 0 0 0 23811 828 23081 442109;442110;442111;442112;442113;442114;442115;442116;442117;442118;442119;442120 271419;271420;271421;271422;271423;271424;271425;271426;271427;271428;271429;271430 271421 12 YVDEQAPWVVAK Unmodified 1403.7085 0.70851601 60 P00959 metG Methionine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34.501 32.859 2 1.2459E-06 15941 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 149.72 139.2 2450900000 195560000 197680000 176310000 0 0 0 209090000 212550000 194830000 1844900 2077300 1293500 172790000 179260000 150120000 0 0 0 243350000 251800000 262330000 0 0 0 23812 60 23082 442121;442122;442123;442124;442125;442126;442127;442128;442129;442130;442131;442132;442133;442134;442135 271431;271432;271433;271434;271435;271436;271437;271438;271439;271440;271441;271442;271443;271444;271445 271435 12 YVDFSYVDGNEYVFMDK Unmodified 2089.8979 0.89790928 266 P0A6N8 yeiP Elongation factor P-like protein yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 51.399 50.151 2 1.5503E-08 24414 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 117.7 113.84 91109000 4847600 6842000 4747500 0 0 0 6344500 6871000 7566600 0 0 0 8602400 8394300 8872200 0 0 0 10061000 9175400 8783900 0 0 0 23813 266 23083 442136;442137;442138;442139;442140;442141;442142;442143;442144;442145;442146;442147 271446;271447;271448;271449;271450;271451;271452 271447 2 YVDFSYVDGNEYVFMDKEDYTPYTFTK Unmodified 3335.4533 0.45327869 266 P0A6N8 yeiP Elongation factor P-like protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.375 51.127 3 6.6471E-06 24877 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 84.365 81.484 166180000 9714400 6654000 6899100 0 0 0 13485000 13535000 12465000 0 0 0 12648000 13504000 11758000 0 0 0 19120000 22165000 24235000 0 0 0 23814 266 23084 442148;442149;442150;442151;442152;442153;442154;442155;442156;442157;442158;442159 271453 271453 1 YVDGFVVAVPADKK Unmodified 1506.8082 0.80823006 607 P0AAQ6 ybaA Uncharacterized protein YbaA yes yes 0 0 1 By MS/MS By MS/MS By MS/MS 1 1 1 30.136 28.998 3 0.0056548 13583 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 56.599 52.208 79540000 29717000 27044000 22778000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23815 607 23085 442160;442161;442162 271454;271455;271456 271454 3 YVDVGATYYFNK Unmodified 1438.6769 0.67688153 144 P06996 ompC Outer membrane protein C no no 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 2 2 2 1 1 1 1 1 1 1 1 2 2 2 2 36.614 34.898 2 5.2286E-05 16599 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 107.21 98.247 345770000 14815000 15665000 12658000 1403500 1169700 1324400 10741000 11906000 12652000 34606000 28827000 29171000 6073500 6254100 6176200 17299000 11166000 12130000 9000100 9275800 11551000 27913000 26254000 27742000 23816 144 23086 442163;442164;442165;442166;442167;442168;442169;442170;442171;442172;442173;442174;442175;442176;442177;442178;442179;442180;442181;442182;442183;442184;442185;442186;442187;442188;442189;442190;442191;442192;442193;442194;442195;442196;442197;442198;442199 271457;271458;271459;271460;271461;271462;271463;271464;271465;271466;271467;271468;271469;271470;271471;271472 271471 9 YVDYFLPIVADAEAGFGGVLNAFELMK Unmodified 2948.467 0.46701868 517 P0A9G6 aceA Isocitrate lyase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 55.852 54.397 3 1.9751E-08 27154 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 110.68 110.29 151430000 50873000 51071000 43218000 0 0 0 6265100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23817 517 23087 442200;442201;442202;442203 271473;271474;271475 271473 3 YVDYVLGILK Unmodified 1181.6696 0.66961131 333 P0A7D4 purA Adenylosuccinate synthetase yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 2 1 1 1 48.934 47.712 2 9.3701E-05 23175 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 131.06 122.2 7457100000 740570000 715870000 549480000 3019300 3108600 3800800 538040000 586590000 534920000 3065900 2971400 4819100 566100000 685450000 528860000 2250700 2409300 2303300 606360000 672080000 701680000 2149100 0 1178500 23818 333 23088 442204;442205;442206;442207;442208;442209;442210;442211;442212;442213;442214;442215;442216;442217;442218;442219;442220;442221;442222;442223;442224;442225;442226;442227;442228;442229;442230;442231 271476;271477;271478;271479;271480;271481;271482;271483;271484;271485;271486 271478 10 YVEAVGR Unmodified 792.413 0.41300269 1658 P63224 gmhA Phosphoheptose isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 12.456 13.259 2 0.0037308 3823 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 106.76 76.092 2567400000 340850000 297380000 310230000 2473100 2340400 2950800 220040000 224480000 197610000 2332800 0 1336100 170080000 140230000 130320000 0 0 0 192650000 168760000 163290000 0 0 0 23819 1658 23089 442232;442233;442234;442235;442236;442237;442238;442239;442240;442241;442242;442243;442244;442245;442246;442247;442248 271487;271488;271489;271490;271491;271492;271493 271490 5 YVEDNYATK Unmodified 1101.4979 0.49785453 224 P0A6A3 ackA Acetate kinase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 13.023 13.734 2 0.00069751 4128 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 103.56 103.56 4090000000 235510000 203160000 0 0 0 0 433450000 430970000 387690000 0 899400 1145200 453310000 509190000 456440000 0 0 0 323790000 334750000 318890000 795880 0 0 23820 224 23090 442249;442250;442251;442252;442253;442254;442255;442256;442257;442258;442259;442260;442261;442262;442263 271494;271495;271496;271497;271498;271499;271500;271501;271502;271503;271504;271505 271497 12 YVESLSAYAR Unmodified 1157.5717 0.57168818 222 P0A698 uvrA UvrABC system protein A yes yes 0 0 0 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 25.613 24.714 2 0.00062224 8103 B210125_11_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep01 91.069 84.614 131620000 0 0 0 0 0 0 22440000 0 23857000 0 5028400 0 0 10895000 0 23572000 19208000 21840000 0 0 0 2459200 0 2320800 23821 222 23091 442264;442265;442266;442267;442268;442269;442270;442271;442272 271506;271507;271508;271509 271506 3 YVESQVYQGVVENLASEQAAR Unmodified 2339.1394 0.13935361 644 P0ABA6 atpG ATP synthase gamma chain yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 3 2 44.226 42.583 2;3 4.9119E-63 21023 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 359.86 357.23 1565000000 47720000 40685000 41086000 5524600 14044000 8872100 95554000 84316000 83438000 20663000 21015000 23217000 165760000 150530000 148760000 10075000 0 11338000 178460000 173410000 183030000 24571000 12982000 19926000 23822 644 23092 442273;442274;442275;442276;442277;442278;442279;442280;442281;442282;442283;442284;442285;442286;442287;442288;442289;442290;442291;442292;442293;442294;442295;442296;442297;442298;442299;442300;442301;442302;442303;442304;442305;442306;442307;442308;442309;442310;442311;442312;442313;442314;442315;442316 271510;271511;271512;271513;271514;271515;271516;271517;271518;271519;271520;271521;271522;271523;271524;271525;271526;271527;271528;271529;271530;271531;271532;271533;271534;271535 271520 23 YVETDNTGDDNYDGLHQVR Unmodified 2209.9512 0.95121849 1152 P18775 dmsA Dimethyl sulfoxide reductase DmsA yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 20.926 21.084 3 1.0426E-07 8552 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 110.12 110.12 100030000 0 0 0 0 0 0 9075200 10708000 7425300 4312100 0 3835900 8839300 10228000 12893000 0 0 0 11601000 9682700 11426000 0 0 0 23823 1152 23093 442317;442318;442319;442320;442321;442322;442323;442324;442325;442326;442327 271536;271537;271538;271539;271540;271541 271538 6 YVEVHRPLSAEEQQNVQTMPYTLPAGFTQFK Unmodified 3607.777 0.77695329 1831 P76193 ynhG Probable L,D-transpeptidase YnhG yes yes 0 0 1 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 42.629 40.93 4 7.893E-33 20452 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 189.7 188.97 492980000 69272000 61307000 65439000 1013700 0 0 63101000 85190000 59870000 0 0 0 16951000 12359000 12996000 0 0 0 15746000 14417000 15320000 0 0 0 23824 1831 23094 442328;442329;442330;442331;442332;442333;442334;442335;442336;442337;442338;442339;442340 271542;271543;271544;271545;271546;271547 271542 6 YVFEHADICDAPAMAR Unmodified 1864.8236 0.8236389 1496 P37759 rfbB dTDP-glucose 4,6-dehydratase 1 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 32.046 30.706 2 1.2208E-88 14856 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 341.46 336.57 507980000 25725000 22170000 22016000 0 0 0 43719000 43042000 36844000 0 0 0 38122000 34529000 41340000 0 0 0 66384000 66162000 67931000 0 0 0 23825 1496 23095 442341;442342;442343;442344;442345;442346;442347;442348;442349;442350;442351;442352 271548;271549;271550;271551;271552;271553;271554;271555;271556;271557;271558;271559 271548 12 YVFTDVQLR Unmodified 1139.5975 0.597509 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.857 34.404 2 1.0524E-05 15759 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 166.05 148.67 1065100000 119300000 113730000 111440000 952450 862630 0 0 0 0 0 0 0 126290000 116060000 115030000 0 0 0 121700000 120000000 119700000 0 0 0 23826 1956 23096 442353;442354;442355;442356;442357;442358;442359;442360;442361;442362;442363;442364;442365;442366 271560;271561;271562;271563;271564;271565;271566;271567;271568;271569;271570;271571 271571 12 YVGFDVDLWAAIAK Unmodified 1566.8082 0.80823006 877 P0AEQ3 glnH Glutamine-binding periplasmic protein yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 55.182 53.709 2 3.2026E-05 26759 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 112.13 106.13 1053600000 193950000 221250000 185270000 0 0 0 34071000 19490000 26578000 0 0 0 91899000 77992000 73588000 0 0 0 52951000 39574000 37031000 0 0 0 23827 877 23097 442367;442368;442369;442370;442371;442372;442373;442374;442375;442376;442377;442378 271572;271573;271574;271575;271576;271577 271573 6 YVGGGLNQHIESAR Unmodified 1499.7481 0.74808942 1932 P77718 thiI tRNA sulfurtransferase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1 1 1 1 1 2 2 15.976 16.723 2;3 3.7187E-06 5781 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 130.56 115.88 152900000 4256900 27076000 23256000 0 0 0 5509500 3916300 4015800 12319000 0 0 11053000 10423000 8577100 0 0 0 6973000 27751000 7772200 0 0 0 23828 1932 23098 442379;442380;442381;442382;442383;442384;442385;442386;442387;442388;442389;442390;442391;442392;442393;442394;442395 271578;271579;271580;271581;271582;271583;271584;271585;271586;271587;271588 271579 11 YVGGYHDAR Unmodified 1036.4726 0.47264284 1564 P43672 uup ABC transporter ATP-binding protein uup yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 10.865 11.737 2 0.0011727 2720 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 91.318 86.584 56550000 0 0 0 0 0 0 0 9480700 9176500 0 0 0 8059200 8456000 8316100 0 0 0 0 0 13061000 0 0 0 23829 1564 23099 442396;442397;442398;442399;442400;442401 271589;271590;271591;271592 271592 4 YVGNIDEDGVCR Unmodified 1395.6089 0.60887832 34 P00561 thrA Bifunctional aspartokinase/homoserine dehydrogenase 1;Aspartokinase;Homoserine dehydrogenase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 21.198 21.546 2 7.0101E-40 8583 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 287.48 282.86 878110000 154930000 142790000 137790000 0 0 0 30354000 30767000 33471000 0 0 0 38930000 34146000 43468000 0 0 0 73068000 80898000 77506000 0 0 0 23830 34 23100 442402;442403;442404;442405;442406;442407;442408;442409;442410;442411;442412;442413 271593;271594;271595;271596;271597;271598;271599;271600;271601;271602;271603;271604 271599 12 YVHGGEYHAYNPDVVR Unmodified 1874.87 0.86999547 218 P09831 gltB Glutamate synthase [NADPH] large chain yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 3 3 3 3 3 3 3 2 16.142 16.962 2;3;4 3.0039E-24 5913 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 235.31 231.99 1575500000 342430000 274820000 266130000 0 0 956410 116270000 106710000 117210000 0 0 0 48737000 52408000 47203000 0 0 0 80843000 72843000 48919000 0 0 0 23831 218 23101 442414;442415;442416;442417;442418;442419;442420;442421;442422;442423;442424;442425;442426;442427;442428;442429;442430;442431;442432;442433;442434;442435;442436;442437;442438;442439;442440;442441;442442;442443;442444;442445;442446;442447;442448;442449 271605;271606;271607;271608;271609;271610;271611;271612;271613;271614;271615;271616;271617;271618;271619;271620;271621;271622;271623;271624;271625;271626;271627;271628;271629;271630;271631;271632;271633;271634 271628 30 YVILPLALR Unmodified 1056.6696 0.66955173 878 P0AEQ6 glnP Glutamine transport system permease protein GlnP yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 48.874 47.486 2 0.00010307 21952 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 135.35 122.99 95364000 5984500 8331000 9359800 2940100 3505900 2606900 3647400 3976000 4496500 1960000 1557100 1595600 9829100 7449500 10067000 0 0 0 5578900 6323800 4937800 0 1217100 0 23832 878 23102 442450;442451;442452;442453;442454;442455;442456;442457;442458;442459;442460;442461;442462;442463;442464;442465;442466;442467;442468 271635;271636;271637;271638;271639;271640;271641;271642;271643 271643 8 YVILPLVNR Unmodified 1085.6597 0.65971533 158 P07118 valS Valine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 42.805 41.072 2 4.0321E-05 19986 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 151.51 147.58 2175700000 189570000 139900000 137270000 0 0 0 205070000 182960000 151500000 0 2163000 0 170100000 163670000 141120000 0 0 0 236710000 224800000 230890000 0 0 0 23833 158 23103 442469;442470;442471;442472;442473;442474;442475;442476;442477;442478;442479;442480;442481 271644;271645;271646;271647;271648;271649;271650;271651;271652;271653 271646 9 YVITVMLHEDTLTEINELNNYLTR Unmodified 2893.4532 0.45315953 1675 P64479 ydiZ Uncharacterized protein YdiZ yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 54.509 53.052 3 2.9733E-22 26194 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 172 169.13 247590000 41707000 40566000 40174000 0 1694500 0 32804000 26625000 28598000 0 0 0 0 5426800 9111300 0 0 0 11233000 9653000 0 0 0 0 23834 1675 23104 442482;442483;442484;442485;442486;442487;442488;442489;442490;442491;442492 271654 271654 1 YVLAGEGNK Unmodified 949.4869 0.48689592 270 P0A6P9 eno Enolase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 14.689 15.305 2 9.9914E-06 4583 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 166.78 149.22 24308000000 1088200000 1172000000 1119800000 13853000 12903000 12249000 2975400000 3228600000 3147400000 18246000 13632000 15208000 1799200000 1750700000 1470100000 2730800 3232300 3973900 2073100000 2159300000 2207900000 6313300 7032700 6939100 23835 270 23105 442493;442494;442495;442496;442497;442498;442499;442500;442501;442502;442503;442504;442505;442506;442507;442508;442509;442510;442511;442512;442513;442514;442515;442516;442517;442518;442519;442520;442521;442522;442523 271655;271656;271657;271658;271659;271660;271661;271662;271663;271664;271665;271666;271667;271668;271669;271670 271670 14 YVLDNGQGGSGQR Unmodified 1349.6324 0.63239096 49 P00909 trpC Tryptophan biosynthesis protein TrpCF;Indole-3-glycerol phosphate synthase;N-(5'-phospho-ribosyl)anthranilate isomerase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 14.194 14.956 2 1.108E-08 4797 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 194.06 191.71 45756000 15962000 14611000 14038000 0 0 0 0 0 0 0 0 0 0 0 1146000 0 0 0 0 0 0 0 0 0 23836 49 23106 442524;442525;442526;442527 271671;271672;271673 271673 3 YVLDSDE Unmodified 839.35488 0.35487869 1750 P69828 gatA Galactitol-specific phosphotransferase enzyme IIA component yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.91 23.817 1 0.0043769 10248 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 116 116 1245600000 102030000 93806000 85585000 3350800 3187300 2771400 157700000 148850000 130180000 3266200 3599800 3197800 91180000 74840000 78408000 0 0 0 89921000 83255000 87886000 0 1248700 1345800 23837 1750 23107 442528;442529;442530;442531;442532;442533;442534;442535;442536;442537;442538;442539;442540;442541;442542;442543;442544;442545;442546;442547 271674;271675;271676;271677 271676 4 YVLPDYAR Unmodified 995.50763 0.50763136 1467 P37342 yjjI Uncharacterized protein YjjI yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 28.58 27.252 2 0.00092909 12850 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 117.17 33.368 773070000 0 0 0 0 0 0 90109000 106090000 96777000 0 0 0 99039000 84555000 83021000 0 0 0 67882000 72761000 72840000 0 0 0 23838 1467 23108 442548;442549;442550;442551;442552;442553;442554;442555;442556 271678;271679;271680;271681;271682;271683;271684;271685;271686 271679 9 YVLQVAPEDCTGCNLCVEVCPAK Unmodified 2681.1958 0.19576433 1609 P52647 ydbK Probable pyruvate-flavodoxin oxidoreductase yes yes 0 0 0 By matching By matching By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 43.094 41.568 2;3 1.3946E-06 20177 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 97.457 96.495 205460000 21638000 16906000 17084000 0 0 0 16523000 19812000 14091000 0 0 0 15514000 14652000 12660000 0 0 0 21107000 19935000 15539000 0 0 0 23839 1609 23109 442557;442558;442559;442560;442561;442562;442563;442564;442565;442566;442567;442568;442569;442570;442571;442572;442573;442574;442575;442576;442577;442578;442579;442580 271687;271688;271689;271690;271691 271691 5 YVLSADIWPELER Unmodified 1589.809 0.80895834 583 P0AAB6 galF UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 52.015 50.821 2 2.779E-13 24756 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 201.48 197.46 1885700000 118980000 104620000 105090000 6501300 5417400 2662900 154910000 155980000 143750000 4403300 4036500 3413800 174830000 164370000 138980000 2320900 2323600 0 182550000 197850000 200950000 4574800 3015300 4179000 23840 583 23110 442581;442582;442583;442584;442585;442586;442587;442588;442589;442590;442591;442592;442593;442594;442595;442596;442597;442598;442599;442600;442601;442602;442603 271692;271693;271694;271695;271696;271697;271698;271699;271700;271701;271702;271703;271704;271705;271706;271707 271698 14 YVLSADIWPLLAK Unmodified 1487.8388 0.8388019 876 P0AEP3 galU UTP--glucose-1-phosphate uridylyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 54.807 53.366 2 3.4678E-05 26207 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 102.06 101.2 2197700000 142240000 161500000 128310000 3299900 3061000 2354600 206510000 218150000 192300000 3433800 3928900 3364600 200300000 171890000 177710000 0 0 0 195220000 202360000 177760000 1983200 2050100 0 23841 876 23111 442604;442605;442606;442607;442608;442609;442610;442611;442612;442613;442614;442615;442616;442617;442618;442619;442620;442621;442622;442623 271708;271709;271710;271711;271712;271713;271714;271715;271716;271717;271718;271719 271716 12 YVMDPSPIPK Unmodified 1145.5791 0.57908174 1128 P16688 phnJ Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase yes yes 0 0 0 By matching By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 28.338 27.063 2 0.10403 12514 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 42.599 39.027 65457000 0 0 0 0 0 0 2960200 0 2359800 0 0 0 5655700 5564900 6845200 0 0 0 13289000 14287000 14495000 0 0 0 23842 1128 23112 442624;442625;442626;442627;442628;442629;442630;442631 271720 271720 0 YVMKPMLPIR Unmodified 1246.693 0.69300606 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30.853 29.256 3 0.00023134 11676 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 83.948 76.023 470760000 24655000 26096000 20362000 3774000 3083400 4623200 24856000 23842000 30604000 10511000 8515400 8895500 48900000 41346000 40973000 0 0 0 32982000 41481000 54202000 5386800 7542700 8129900 23843 1854 23113 442632;442633;442634;442635;442636;442637;442638;442639;442640;442641;442642;442643;442644;442645;442646;442647;442648;442649;442650;442651;442652 271721;271722;271723;271724 271721 4 YVMKPMLPIRR Unmodified 1402.7941 0.79411709 1854 P76372 wzzB Chain length determinant protein yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 1 1 2 2 2 23.458 22.563 3;4 0.00013032 7904 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 94.692 86.307 85397000 0 0 0 5735000 0 3139700 0 0 0 12130000 13254000 12458000 0 0 0 1564100 2843700 3032400 0 0 0 9386900 9910800 11942000 23844 1854 23114 442653;442654;442655;442656;442657;442658;442659;442660;442661;442662;442663;442664;442665;442666;442667;442668;442669;442670 271725;271726;271727;271728;271729;271730;271731;271732;271733;271734;271735;271736 271729 12 YVNWQPSPLEHIEMLEQLR Unmodified 2381.1838 0.18380139 97 P04951 kdsB 3-deoxy-manno-octulosonate cytidylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 50.979 49.723 3 3.0327E-10 24015 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 127.22 124.6 626360000 44973000 35978000 37090000 0 0 0 56512000 45512000 49257000 0 0 0 49183000 48186000 52165000 0 0 0 66124000 62992000 78389000 0 0 0 23845 97 23115 442671;442672;442673;442674;442675;442676;442677;442678;442679;442680;442681;442682 271737;271738;271739;271740;271741;271742;271743 271740 7 YVPHFKPGK Unmodified 1071.5866 0.58655038 291 P0A6Y1 ihfB Integration host factor subunit beta yes yes 0 0 1 By matching By matching By matching By matching By matching By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 12.412 12.98 2;3 0.030442 3064 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 41.876 39.197 1684900000 31537000 35545000 164160000 3054800 2138000 2447700 153320000 23907000 145750000 63373000 55337000 58817000 119590000 104580000 94059000 161850000 90816000 125570000 80959000 86477000 12650000 23845000 24120000 20963000 23846 291 23116 442683;442684;442685;442686;442687;442688;442689;442690;442691;442692;442693;442694;442695;442696;442697;442698;442699;442700;442701;442702;442703;442704;442705;442706;442707;442708;442709;442710;442711;442712;442713;442714;442715;442716;442717;442718;442719;442720;442721;442722;442723 271744;271745;271746;271747;271748;271749;271750;271751;271752;271753;271754;271755;271756;271757;271758;271759 271753 16 YVPLVLR Unmodified 858.53272 0.5327239 1550 P40874 solA N-methyl-L-tryptophan oxidase yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 32.454 31.037 2 0.0041666 14420 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 104.94 32.324 562840000 60987000 55704000 48043000 0 0 0 51814000 42747000 47597000 0 1942100 0 40715000 38393000 38681000 0 0 0 48991000 45161000 42064000 0 0 0 23847 1550 23117 442724;442725;442726;442727;442728;442729;442730;442731;442732;442733;442734;442735;442736 271760;271761;271762;271763;271764;271765;271766;271767;271768;271769 271766 10 YVPPEGQSLR Unmodified 1144.5877 0.58767259 1091 P13482 treA Periplasmic trehalase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1 1 1 1 17.522 18.182 2 0.00030192 6486 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 111.95 82.798 227430000 44400000 44545000 41867000 0 0 0 22756000 21242000 20164000 0 0 0 8040700 7450000 5871800 0 0 0 11095000 0 0 0 0 0 23848 1091 23118 442737;442738;442739;442740;442741;442742;442743;442744;442745;442746;442747 271770;271771;271772;271773;271774;271775;271776;271777;271778 271775 9 YVPSGDVPDVVQEAFIK Unmodified 1861.9462 0.9461801 1005 P0AGB6 rpoE ECF RNA polymerase sigma-E factor yes yes 0 0 0 By matching By matching By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 48.915 47.917 2 2.8519E-06 17252 B210125_12_HF_LS_IN_90_PD04_ID_rpoB_eTEV_rep02 108.59 107.22 476400000 0 0 0 0 1439100 0 0 0 10699000 0 0 1637700 7150900 6331500 5824000 157360000 127420000 138030000 7521900 5302700 6394500 0 0 1286100 23849 1005 23119 442748;442749;442750;442751;442752;442753;442754;442755;442756;442757;442758;442759;442760 271779;271780;271781;271782;271783 271781 5 YVQIDPEMVTVQLEQK Unmodified 1918.971 0.97101464 306 P0A734 minE Cell division topological specificity factor yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 47.357 45.906 2;3 3.533E-09 22228 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 159.77 151.86 1321700000 143250000 117060000 111050000 2722100 2649900 2425900 84662000 77906000 82734000 6343600 6977600 5568400 106050000 103140000 100220000 3589700 1785100 0 117810000 114180000 125540000 4096500 1961000 0 23850 306 23120 442761;442762;442763;442764;442765;442766;442767;442768;442769;442770;442771;442772;442773;442774;442775;442776;442777;442778;442779;442780;442781;442782;442783;442784;442785;442786;442787;442788;442789;442790;442791;442792;442793;442794;442795;442796;442797;442798 271784;271785;271786;271787;271788;271789;271790;271791;271792;271793;271794;271795;271796;271797;271798;271799;271800;271801;271802 271796 16 YVSDELNTWVR Unmodified 1380.6674 0.66737948 807 P0ADT8 ygiM Uncharacterized protein YgiM yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 38.237 36.279 2 1.1327E-05 14082 B210127_09_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep03 145.72 125.94 95871000 0 0 0 3272100 2810900 3518000 0 0 20619000 8395500 6763100 6505300 9339000 11111000 8311200 0 0 0 0 0 0 5275600 4884400 5065800 23851 807 23121 442799;442800;442801;442802;442803;442804;442805;442806;442807;442808;442809;442810;442811 271803;271804;271805;271806;271807;271808;271809;271810 271807 7 YVSDSFR Unmodified 872.40283 0.40283194 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 16.002 16.634 2 0.0078297 5755 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 89.673 77.413 1443600000 153970000 143610000 134880000 5998900 4615700 4327900 107500000 109400000 106920000 17267000 15156000 17538000 81588000 78987000 68815000 0 0 0 121680000 124390000 115130000 12636000 10445000 8708400 23852 1210 23122 442812;442813;442814;442815;442816;442817;442818;442819;442820;442821;442822;442823;442824;442825;442826;442827;442828;442829;442830;442831;442832 271811;271812;271813;271814 271813 4 YVSDSFRDCFALECEAVKR Unmodified 2351.0675 0.067450998 1210 P23538 ppsA Phosphoenolpyruvate synthase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 33.658 31.72 4 0.093059 12077 B210127_07_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep01 29.892 29.601 41420000 0 0 0 5418100 5025600 4579900 0 0 0 5039100 0 5396300 0 0 0 0 0 0 0 0 0 5059000 5515400 5386600 23853 1210 23123 442833;442834;442835;442836;442837;442838;442839;442840 271815;271816;271817;271818;271819 271816 5 YVSLKDTIR Unmodified 1093.6132 0.61315906 646 P0ABB4 atpD ATP synthase subunit beta yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 3 3 3 1 1 3 2 2 1 1 1 2 2 2 1 1 2 2 3 18.552 18.835 2;3 0.00015371 5645 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 141.39 136.65 748020000 2500400 8724400 6316000 40372000 43144000 46235000 4087900 2770600 0 123040000 91379000 77157000 1415500 1613700 1144600 46449000 35755000 40619000 2131400 0 3271900 66549000 56921000 46420000 23854 646 23124 442841;442842;442843;442844;442845;442846;442847;442848;442849;442850;442851;442852;442853;442854;442855;442856;442857;442858;442859;442860;442861;442862;442863;442864;442865;442866;442867;442868;442869;442870;442871;442872;442873;442874;442875;442876;442877;442878;442879;442880;442881 271820;271821;271822;271823;271824;271825;271826;271827;271828;271829;271830;271831;271832;271833;271834;271835;271836;271837;271838;271839;271840;271841;271842;271843 271834 24 YVSPDEFDEMK Unmodified 1358.57 0.5700332 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31.537 30.113 2 8.608E-05 13592 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.75 140.75 610570000 64993000 56856000 53183000 1194400 1805800 1194000 44129000 39796000 40932000 0 0 0 45831000 44877000 45056000 0 0 0 58192000 54799000 55743000 1989300 0 0 23855 1628 23125 442882;442883;442884;442885;442886;442887;442888;442889;442890;442891;442892;442893;442894;442895;442896;442897 271844;271845;271846;271847;271848;271849 271848 6 YVSPDEFDEMKAEALAMGFTHAACGPFVR Unmodified 3245.462 0.46202643 1628 P60716 lipA Lipoyl synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 2 2 2 52.718 51.481 3;4 5.0827E-23 25121 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 168.57 168.57 1859900000 125040000 115810000 108410000 66693000 70972000 76717000 78151000 71001000 72695000 14517000 11416000 14050000 100880000 80622000 88026000 6885900 6253700 12464000 121370000 134830000 138200000 108000000 118380000 118540000 23856 1628 23126 442898;442899;442900;442901;442902;442903;442904;442905;442906;442907;442908;442909;442910;442911;442912;442913;442914;442915;442916;442917;442918;442919;442920;442921;442922;442923;442924;442925;442926;442927;442928;442929;442930;442931;442932;442933;442934;442935;442936;442937;442938 271850;271851;271852;271853;271854;271855;271856;271857;271858;271859;271860;271861;271862;271863;271864;271865;271866;271867;271868;271869;271870;271871;271872 271857 23 YVTYADFWIQDQEYRDPDTGQLFDR Unmodified 3140.4152 0.41519412 757 P0ACY3 yeaG Uncharacterized protein YeaG yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 52.3 51.052 3 9.6227E-41 25293 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 211.92 211.23 525830000 95245000 84441000 71933000 0 0 0 60806000 56101000 66475000 0 0 0 15462000 10235000 11867000 0 0 0 19468000 17323000 16471000 0 0 0 23857 757 23127 442939;442940;442941;442942;442943;442944;442945;442946;442947;442948;442949;442950 271873;271874;271875;271876;271877;271878;271879 271873 7 YVVALNLAPATPR Unmodified 1383.7874 0.78743503 997 P0AG90 secD Protein translocase subunit SecD yes yes 0 0 0 By matching By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 40.205 38.198 2 7.1929E-05 14911 B210127_08_HF_LS_IN_90_PD04_ID_yacL_eTEV_rep02 96.89 90.587 69620000 0 10201000 0 1864000 2162100 0 23450000 0 0 5070200 5116400 0 16878000 0 0 0 0 0 0 0 0 0 4878000 0 23858 997 23128 442951;442952;442953;442954;442955;442956;442957;442958;442959 271880;271881;271882;271883;271884;271885 271882 2 YVVDSLR Unmodified 850.45487 0.45486751 1650 P62623 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase yes yes 0 0 0 By MS/MS By matching By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 21.055 21.388 2 0.00080871 8392 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 144.29 96.121 579090000 55830000 47154000 41741000 585560 680790 1208900 45634000 42101000 44108000 0 0 0 46172000 35543000 37849000 0 0 0 67511000 62144000 50826000 0 0 0 23859 1650 23129 442960;442961;442962;442963;442964;442965;442966;442967;442968;442969;442970;442971;442972;442973;442974 271886;271887;271888;271889;271890;271891 271888 6 YVVHNVAHR Unmodified 1093.5781 0.57811096 508 P0A9C5 glnA Glutamine synthetase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 2 2 1 2 2 2 1 1 2 2 2 1 1 10.686 11.408 2;3 7.4327E-06 2678 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 200.12 192.19 5961800000 586400000 742370000 732320000 0 4749900 0 496800000 416920000 450760000 4623400 0 0 447930000 368230000 323580000 0 1712200 1278000 519200000 443120000 418630000 0 3137200 0 23860 508 23130 442975;442976;442977;442978;442979;442980;442981;442982;442983;442984;442985;442986;442987;442988;442989;442990;442991;442992;442993;442994;442995;442996;442997;442998;442999;443000;443001;443002;443003;443004 271892;271893;271894;271895;271896;271897;271898;271899;271900;271901;271902;271903;271904;271905;271906;271907;271908;271909;271910;271911;271912;271913;271914;271915;271916 271893 25 YVVITSVDR Unmodified 1050.571 0.5709599 1628 P60716 lipA Lipoyl synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 24.938 23.896 2 0.00011938 10107 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 133.6 111.75 474260000 40744000 46511000 36923000 0 1571800 1277500 31586000 31088000 33302000 0 0 1301900 33898000 36140000 31424000 0 0 0 51748000 44359000 45629000 2253300 2360600 2141800 23861 1628 23131 443005;443006;443007;443008;443009;443010;443011;443012;443013;443014;443015;443016;443017;443018;443019;443020;443021;443022 271917;271918;271919;271920;271921;271922;271923;271924;271925 271924 7 YVVITSVDRDDLR Unmodified 1549.81 0.81002097 1628 P60716 lipA Lipoyl synthase yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 1 1 1 2 2 2 2 1 1 1 2 2 2 2 2 27.822 26.635 2;3 1.3412E-23 11997 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 239.54 197.54 2884500000 227450000 208440000 169070000 91431000 74339000 77209000 153910000 146550000 128600000 10790000 9480900 11071000 156580000 162050000 133070000 9248600 6215200 7266300 200610000 278810000 265930000 124870000 113810000 117720000 23862 1628 23132 443023;443024;443025;443026;443027;443028;443029;443030;443031;443032;443033;443034;443035;443036;443037;443038;443039;443040;443041;443042;443043;443044;443045;443046;443047;443048;443049;443050;443051;443052;443053;443054;443055;443056;443057;443058;443059;443060;443061;443062;443063;443064 271926;271927;271928;271929;271930;271931;271932;271933;271934;271935;271936;271937;271938;271939;271940;271941;271942;271943;271944;271945;271946;271947;271948;271949;271950;271951;271952;271953;271954;271955;271956;271957 271952 32 YVVKPIFSR Unmodified 1107.6441 0.64406526 806 P0ADT5 ygiC Putative acid--amine ligase YgiC yes yes 0 0 1 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1 2 2 2 1 1 1 2 2 1 1 1 2 2 2 1 1 24.327 23.393 2;3 0.0015966 10615 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 81.972 79.817 322550000 11474000 12540000 8197900 1862500 2282200 1951700 38204000 32373000 30745000 1204500 1241200 1335800 21625000 17878000 8604100 0 1335000 1383300 44607000 41949000 36562000 1381300 0 3812100 23863 806 23133 443065;443066;443067;443068;443069;443070;443071;443072;443073;443074;443075;443076;443077;443078;443079;443080;443081;443082;443083;443084;443085;443086;443087;443088;443089;443090;443091;443092;443093;443094;443095;443096 271958;271959;271960;271961;271962;271963;271964;271965;271966;271967;271968;271969;271970 271960 13 YVVVPGWSDDDDSAHR Unmodified 1816.8016 0.80164113 540 P0A9N4 pflA Pyruvate formate-lyase 1-activating enzyme yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 1 1 1 32.534 31.16 2;3 2.2781E-18 14670 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 188.06 184.3 1643700000 103040000 97968000 92017000 4846500 0 2588300 147270000 135150000 146500000 5319000 5961400 4485800 170410000 159480000 157910000 2576400 3150400 1857600 131810000 136820000 126340000 2951400 2539800 2755100 23864 540 23134 443097;443098;443099;443100;443101;443102;443103;443104;443105;443106;443107;443108;443109;443110;443111;443112;443113;443114;443115;443116;443117;443118;443119;443120;443121;443122;443123;443124;443125;443126;443127;443128;443129;443130;443131 271971;271972;271973;271974;271975;271976;271977;271978;271979;271980;271981;271982;271983;271984;271985;271986;271987;271988;271989;271990;271991 271983 20 YWDDRDTPRPESWVEDIATAK Unmodified 2549.1823 0.18228106 1091 P13482 treA Periplasmic trehalase yes yes 0 0 2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 1 1 1 2 2 1 1 1 42.403 40.733 3;4 1.7089E-21 19987 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 160.13 157.2 515370000 112760000 111030000 107800000 0 0 0 58363000 19311000 17878000 0 0 0 7868100 21873000 21320000 0 0 0 12019000 11458000 13685000 0 0 0 23865 1091 23135 443132;443133;443134;443135;443136;443137;443138;443139;443140;443141;443142;443143;443144;443145;443146;443147;443148;443149 271992;271993;271994;271995;271996;271997;271998;271999;272000;272001;272002;272003 271998 12 YWDVELR Unmodified 979.47633 0.47633123 1755;1756 P69908;P69910 gadA;gadB Glutamate decarboxylase alpha;Glutamate decarboxylase beta no no 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35.311 33.726 2 0.00028714 15372 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 159.19 143.75 13332000000 1287800000 1091000000 978000000 3141900 2813900 3713700 3194800000 2996700000 2966900000 0 0 30203000 120340000 122370000 101570000 0 0 0 146710000 144250000 139290000 0 692950 1223100 23866 1755;1756 23136 443150;443151;443152;443153;443154;443155;443156;443157;443158;443159;443160;443161;443162;443163;443164;443165;443166;443167;443168 272004;272005;272006;272007;272008;272009;272010;272011;272012;272013;272014;272015;272016;272017;272018;272019;272020;272021;272022;272023;272024;272025 272025 22 YWFESLAGIPCDVEIASEFR Unmodified 2388.1096 0.10963339 1137 P17169 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 1 55.364 53.887 2;3 7.4993E-38 26572 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 244.44 240.27 1604700000 125370000 112840000 112590000 0 0 0 108960000 108050000 89558000 23429000 29302000 0 139030000 128830000 122820000 0 0 0 161700000 177470000 135830000 7325500 14326000 7226800 23867 1137 23137 443169;443170;443171;443172;443173;443174;443175;443176;443177;443178;443179;443180;443181;443182;443183;443184;443185;443186;443187;443188;443189;443190;443191;443192;443193;443194;443195;443196;443197;443198;443199;443200 272026;272027;272028;272029;272030;272031;272032;272033;272034;272035;272036;272037;272038;272039;272040;272041;272042;272043;272044;272045;272046;272047 272034 22 YWGFVPEANLVGR Unmodified 1506.7619 0.76194857 39 P00803 lepB Signal peptidase I yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1 49.886 48.434 2 0.00018231 17390 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 86.624 84.871 40158000 0 0 0 4813800 4612200 4454100 0 0 0 9975300 9897000 0 0 0 0 0 0 0 0 0 0 0 0 6405800 23868 39 23138 443201;443202;443203;443204;443205;443206 272048;272049 272049 2 YWHDTTVQMSDFK Unmodified 1656.7242 0.72424243 1816 P76108 ydcS Putative ABC transporter periplasmic-binding protein YdcS yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 2 2 2 1 1 2 1 1 1 1 1 29.339 28.09 2;3 3.0208E-17 12990 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 246.08 246.08 629280000 214960000 190580000 156260000 0 0 0 12843000 14075000 14628000 0 0 0 0 3111100 3658800 0 0 0 6057500 6068300 7031400 0 0 0 23869 1816 23139 443207;443208;443209;443210;443211;443212;443213;443214;443215;443216;443217;443218;443219;443220;443221 272050;272051;272052;272053;272054;272055;272056 272051 7 YWLVDPLDGTK Unmodified 1305.6605 0.66050319 1193 P22255 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 49.439 48.072 2 0.00018672 23889 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 106.2 89.086 565990000 90709000 92786000 82349000 1019700 917010 0 51777000 46506000 48496000 0 0 0 22051000 22891000 21265000 0 0 0 28936000 28450000 27838000 0 0 0 23870 1193 23140 443222;443223;443224;443225;443226;443227;443228;443229;443230;443231;443232;443233;443234;443235 272057;272058;272059;272060;272061;272062;272063;272064;272065;272066;272067;272068 272057 12 YWMTFNEINNQR Unmodified 1614.7249 0.72491113 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 41.076 39.411 2 1.4061E-31 19074 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 269.39 267.98 313110000 28346000 26065000 22194000 0 0 0 26841000 26308000 25183000 0 0 0 29739000 28288000 25793000 0 0 0 24623000 25757000 23975000 0 0 0 23871 1956 23141 443236;443237;443238;443239;443240;443241;443242;443243;443244;443245;443246;443247 272069;272070;272071;272072;272073;272074;272075;272076;272077;272078;272079;272080 272074 12 YWNSHQVDSAR Unmodified 1361.6113 0.61126158 1876 P76576 yfgM UPF0070 protein YfgM yes yes 0 0 0 By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 2 1 2 2 2 2 1 2 2 1 1 1 1 1 2 2 2 2 12.991 13.515 2;3 2.7592E-07 3762 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 160.53 143.69 430870000 11323000 0 11312000 0 0 4237200 52706000 11092000 36644000 35035000 32845000 28696000 13618000 47977000 8991800 4967100 3701700 4062900 14302000 12265000 38653000 22004000 15215000 21219000 23872 1876 23142 443248;443249;443250;443251;443252;443253;443254;443255;443256;443257;443258;443259;443260;443261;443262;443263;443264;443265;443266;443267;443268;443269;443270;443271;443272;443273;443274;443275;443276;443277;443278;443279;443280 272081;272082;272083;272084;272085;272086;272087;272088;272089;272090;272091;272092;272093;272094;272095 272091 15 YWQADLLLER Unmodified 1305.6717 0.67173657 1006 P0AGC3 slt Soluble lytic murein transglycosylase yes yes 0 0 0 By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 45.599 44.241 2 0.08936 21696 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 44.753 35.84 91314000 19219000 13901000 11963000 0 0 0 0 7180100 0 0 0 0 7772400 6379000 7523500 0 0 0 0 8347900 9028600 0 0 0 23873 1006 23143 443281;443282;443283;443284;443285;443286;443287;443288;443289 272096;272097 272096 0 YWVETCHVDGFR Unmodified 1567.6878 0.68779734 1104 P15067 glgX Glycogen debranching enzyme yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 29.553 28.288 3 0.028836 13213 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 43.382 43.281 113220000 14772000 12871000 12189000 0 0 0 14624000 11821000 11650000 0 0 0 7913500 5203400 5541700 0 0 0 8728300 7910500 0 0 0 0 23874 1104 23144 443290;443291;443292;443293;443294;443295;443296;443297;443298;443299;443300 272098 272098 0 YWYGPTSR Unmodified 1028.4716 0.4715802 1880 P76658 hldE Bifunctional protein HldE;D-beta-D-heptose 7-phosphate kinase;D-beta-D-heptose 1-phosphate adenylyltransferase yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 23.982 22.98 2 0.0016218 9564 B210127_23_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep01 107.32 104.61 468400000 0 0 0 1462700 1215600 1471800 44581000 43328000 39993000 6718900 4884900 4763100 44575000 61337000 42473000 0 0 0 53076000 55378000 61343000 1801500 0 0 23875 1880 23145 443301;443302;443303;443304;443305;443306;443307;443308;443309;443310;443311;443312;443313;443314;443315;443316 272099;272100;272101;272102;272103;272104;272105;272106 272105 8 YYAIDFTLDEIK Unmodified 1489.7341 0.73406206 213 P09394 glpQ Glycerophosphoryl diester phosphodiesterase yes yes 0 0 0 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 51.212 50.081 2 3.7542E-06 24171 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 134.68 130.43 616630000 0 0 0 0 0 0 76345000 64371000 66545000 0 0 0 80465000 79362000 84208000 0 862480 0 51644000 59780000 53043000 0 0 0 23876 213 23146 443317;443318;443319;443320;443321;443322;443323;443324;443325;443326 272107;272108;272109;272110;272111;272112;272113;272114 272111 8 YYAVAQIQR Unmodified 1110.5822 0.58219329 1083 P13009 metH Methionine synthase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 22.354 21.836 2 3.0286E-05 9266 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 154.09 149 138700000 12904000 11488000 9974200 3322000 2992000 0 11048000 12939000 9367400 4602000 0 0 6853900 7564400 5426000 883750 920820 572330 12444000 12254000 13140000 0 0 0 23877 1083 23147 443327;443328;443329;443330;443331;443332;443333;443334;443335;443336;443337;443338;443339;443340;443341;443342;443343;443344 272115;272116;272117;272118;272119;272120;272121;272122;272123 272116 9 YYCLSMLPYPSGR Unmodified 1605.732 0.73197035 170 P07813 leuS Leucine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1 2 2 2 2 2 2 44.963 43.412 2;3 2.1082E-12 20283 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 190.88 188.15 1840100000 152980000 152640000 147120000 0 0 0 159140000 153990000 143370000 1137300 0 0 159290000 135840000 136910000 0 0 0 164900000 168170000 164570000 0 0 0 23878 170 23148 443345;443346;443347;443348;443349;443350;443351;443352;443353;443354;443355;443356;443357;443358;443359;443360;443361;443362;443363;443364;443365;443366;443367;443368;443369 272124;272125;272126;272127;272128;272129;272130;272131;272132;272133;272134;272135;272136;272137;272138;272139;272140;272141;272142;272143;272144;272145;272146 272143 23 YYDAETVR Unmodified 1015.4611 0.4610751 1188 P21888 cysS Cysteine--tRNA ligase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 14.949 15.748 2 0.00040535 4980 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 140.98 134.53 809410000 63815000 52779000 55802000 0 0 0 61935000 58417000 48008000 0 0 0 79618000 72503000 75948000 0 0 0 78700000 82202000 79687000 0 0 0 23879 1188 23149 443370;443371;443372;443373;443374;443375;443376;443377;443378;443379;443380;443381 272147;272148;272149;272150;272151;272152;272153;272154;272155;272156;272157;272158 272157 12 YYDELPTEGNEHGQAFR Unmodified 2024.8864 0.88643339 696 P0AC33 fumA Fumarate hydratase class I, aerobic yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 2 2 2 1 1 1 2 2 2 2 2 2 1 1 25.767 24.602 2;3 1.3567E-15 10897 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 234.3 233.11 2815700000 422460000 417620000 384190000 2633100 3153300 3520600 119350000 111830000 129190000 5870600 3308100 4548500 161340000 151840000 147720000 0 0 0 247390000 243600000 250640000 0 5549500 0 23880 696 23150 443382;443383;443384;443385;443386;443387;443388;443389;443390;443391;443392;443393;443394;443395;443396;443397;443398;443399;443400;443401;443402;443403;443404;443405;443406;443407;443408;443409;443410;443411;443412;443413 272159;272160;272161;272162;272163;272164;272165;272166;272167;272168;272169;272170;272171;272172;272173;272174;272175;272176;272177;272178;272179;272180;272181;272182;272183;272184;272185;272186;272187 272179 29 YYDMHQVISAALYQVK Unmodified 1927.9502 0.95021962 1491 P37747 glf UDP-galactopyranose mutase yes yes 0 0 0 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 48.29 46.959 3 1.7282E-06 22655 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 93.424 73.056 673510000 41835000 38823000 49604000 571560 0 0 54644000 54246000 48294000 0 0 0 49106000 50237000 43679000 0 0 0 77952000 80058000 84464000 0 0 0 23881 1491 23151 443414;443415;443416;443417;443418;443419;443420;443421;443422;443423;443424;443425;443426 272188;272189;272190;272191;272192;272193;272194;272195;272196 272191 9 YYEGWER Unmodified 1001.4243 0.42429566 1252 P25397 tehB Tellurite methyltransferase yes yes 0 0 0 By matching By matching By matching By matching By matching By matching By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 21.551 21.672 2 0.034882 8347 B210127_25_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep03 65.803 65.113 408630000 29935000 29797000 29314000 0 0 0 40401000 30689000 35864000 0 0 0 39523000 32769000 42559000 0 0 0 28865000 33602000 35308000 0 0 0 23882 1252 23152 443427;443428;443429;443430;443431;443432;443433;443434;443435;443436;443437;443438 272197 272197 1 YYEQNDESALPR Unmodified 1483.6579 0.657937 118 P05791 ilvD Dihydroxy-acid dehydratase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 20.621 21.044 2 4.244E-17 8200 B210127_20_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep02 217.47 217.47 119940000 22683000 24747000 17302000 0 0 0 6297100 7152900 6690900 0 0 0 4983500 3971200 2465600 0 0 0 7572400 7840800 8230500 0 0 0 23883 118 23153 443439;443440;443441;443442;443443;443444;443445;443446;443447;443448;443449;443450 272198;272199;272200;272201;272202;272203;272204;272205;272206 272202 8 YYGEVAEEGTFLFPHVADTLGALQAK Unmodified 2825.3912 0.3912112 1394 P32662 gph Phosphoglycolate phosphatase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 53.558 52.197 3 9.2717E-16 24578 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 148.29 136.54 220250000 0 0 38514000 0 0 0 0 0 0 0 0 0 44634000 46945000 38367000 0 0 0 51793000 0 0 0 0 0 23884 1394 23154 443451;443452;443453;443454;443455 272207;272208;272209;272210;272211 272210 5 YYGGCEYVDIVEQLAIDR Unmodified 2161.999 0.99902031 391 P0A825 glyA Serine hydroxymethyltransferase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 2 2 2 2 2 2 2 54.629 53.187 2;3 3.3893E-56 25979 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 292.49 289.54 2935800000 487330000 459150000 362260000 0 0 2547900 168960000 165900000 169940000 0 0 0 197260000 144390000 153560000 0 0 0 201970000 213270000 209300000 0 0 0 23885 391 23155 443456;443457;443458;443459;443460;443461;443462;443463;443464;443465;443466;443467;443468;443469;443470;443471;443472;443473;443474;443475;443476;443477;443478;443479;443480 272212;272213;272214;272215;272216;272217;272218;272219;272220;272221;272222;272223;272224;272225;272226;272227;272228;272229;272230;272231;272232;272233;272234;272235 272222 24 YYGPASQVVPEFVEK Unmodified 1711.8457 0.84573777 1799 P75960 cobB NAD-dependent protein deacylase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 41.368 39.535 2 1.2857E-08 19160 B210127_13_HF_LS_IN_90_PD04_ID_yacL_Sup_rep03 145.31 129.45 444300000 42962000 40148000 32349000 0 0 0 31723000 26883000 30820000 7835300 6837700 7457500 31218000 29312000 26393000 0 0 0 45544000 44677000 40144000 0 0 0 23886 1799 23156 443481;443482;443483;443484;443485;443486;443487;443488;443489;443490;443491;443492;443493;443494;443495;443496 272236;272237;272238;272239;272240;272241;272242;272243;272244;272245;272246;272247;272248;272249;272250 272244 15 YYGVAYGYSK Unmodified 1169.5393 0.53932542 1747 P69805 manZ Mannose permease IID component yes yes 0 0 0 By matching By matching By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1 1 24.749 23.584 2 0.041478 9961 B210127_24_HF_LS_IN_90_PD04_ID_rpoB_Sup_rep02 56.916 53.561 39161000 0 0 0 0 0 0 8011900 8225200 10247000 0 0 2550900 0 2427800 0 0 0 0 4229200 3468600 0 0 0 0 23887 1747 23157 443497;443498;443499;443500;443501;443502;443503 272251 272251 0 YYLATGGGDISQAEVLLK Unmodified 1896.9833 0.98329389 648 P0ABC3 hflC Modulator of FtsH protease HflC yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 46.823 45.265 2 4.3925E-22 18031 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 182.08 173.13 414970000 10556000 11953000 8757100 10591000 10142000 9489000 25676000 28330000 28178000 20188000 20691000 19526000 17840000 20006000 16759000 0 0 0 36325000 38410000 33230000 16430000 15701000 16192000 23888 648 23158 443504;443505;443506;443507;443508;443509;443510;443511;443512;443513;443514;443515;443516;443517;443518;443519;443520;443521;443522;443523;443524 272252;272253;272254;272255;272256;272257;272258;272259;272260;272261;272262;272263 272254 10 YYLGNADEIAAK Unmodified 1326.6456 0.6455814 1652 P62707 gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 1 1 1 2 2 1 1 1 1 28.184 26.99 2;3 2.934E-06 12671 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 138.66 73.621 15255000000 2264400000 2006300000 1961100000 5808600 2662800 0 1037300000 1003400000 953990000 0 0 0 765830000 746680000 784810000 0 0 0 1253700000 1260200000 1205000000 4279600 0 0 23889 1652 23159 443525;443526;443527;443528;443529;443530;443531;443532;443533;443534;443535;443536;443537;443538;443539;443540;443541;443542;443543 272264;272265;272266;272267;272268;272269;272270;272271;272272;272273;272274;272275;272276;272277;272278;272279;272280;272281;272282;272283;272284;272285;272286;272287 272264 23 YYLNAGVPIEIK Unmodified 1378.7497 0.74965254 585 P0AAC0 uspE Universal stress protein E yes yes 0 0 0 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By matching By matching By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 42.353 40.737 2 0.00012308 16353 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 107.79 102.25 1376300000 126390000 122110000 102960000 4847200 4049700 4010600 192310000 186820000 175610000 10219000 7961900 8686200 86091000 83825000 81483000 2240900 2467100 2726000 54316000 53196000 58776000 2391100 2769500 0 23890 585 23160 443544;443545;443546;443547;443548;443549;443550;443551;443552;443553;443554;443555;443556;443557;443558;443559;443560;443561;443562;443563;443564;443565;443566 272288;272289;272290;272291;272292;272293;272294;272295 272289 8 YYLNGMLFETEGEELR Oxidation (M) 1978.8982 0.89824363 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 1 0 By MS/MS By MS/MS By MS/MS 4 5 4 46.615 44.395 2;3 6.7174E-24 17527 B210125_21_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep02 216.06 216.06 179600000 0 0 0 0 0 0 0 0 0 65674000 60875000 53048000 0 0 0 0 0 0 0 0 0 0 0 0 23891 497 23161 443567;443568;443569;443570;443571;443572;443573;443574;443575;443576;443577;443578;443579 272296;272297;272298;272299;272300;272301;272302;272303;272304;272305;272306;272307;272308;272309;272310 272302 301 15 YYLNGMLFETEGEELR Unmodified 1962.9033 0.90332901 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 2 2 1 1 1 1 50.507 49.29 2;3 4.0347E-25 19620 B210125_22_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep03 270.56 267.03 4815800000 6637100 6225500 6200600 0 0 0 0 0 4983000 1648700000 1478600000 1646100000 0 6496000 0 0 1061900 736440 0 10002000 0 0 0 0 23892 497 23161 443580;443581;443582;443583;443584;443585;443586;443587;443588;443589;443590;443591;443592;443593 272311;272312;272313;272314;272315;272316;272317;272318;272319;272320;272321;272322;272323;272324;272325;272326 272320 13 YYLNGMLFETEGEELRTVATDGHR Unmodified 2800.3126 0.31264331 497 P0A988 dnaN DNA polymerase III subunit beta yes yes 0 0 1 By MS/MS By matching By matching 1 1 1 46.495 44.178 4 0.023949 18046 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 40.937 38.429 11711000 0 0 0 0 0 0 0 0 0 4960700 3331600 3418400 0 0 0 0 0 0 0 0 0 0 0 0 23893 497 23162 443594;443595;443596 272327 272327 1 YYPAEDAK Unmodified 955.42871 0.42871234 731 P0ACI0 rob Right origin-binding protein yes yes 0 0 0 By matching By matching By MS/MS By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 12.594 13.427 2 0.044705 3938 B210127_21_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep03 60.895 60.189 176640000 18681000 18269000 16938000 0 0 0 12545000 17904000 17449000 0 0 0 10962000 11296000 11476000 0 0 0 15176000 13973000 11970000 0 0 0 23894 731 23163 443597;443598;443599;443600;443601;443602;443603;443604;443605;443606;443607;443608 272328;272329;272330;272331 272328 4 YYPHLYGEK Unmodified 1168.5553 0.55530983 600 P0AAJ8 hybA Hydrogenase-2 operon protein HybA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By MS/MS By matching By matching By matching 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 2 18.924 19.208 2;3 0.027014 6172 B210125_20_HF_LS_IN_90_PD04_ID_nusG_eTEV_rep01 44.318 38.356 241110000 0 0 0 0 0 0 28783000 27171000 29892000 10263000 10442000 8371800 24552000 17799000 20504000 0 2172200 2796000 16168000 15903000 18900000 2222200 2225900 2946900 23895 600 23164 443609;443610;443611;443612;443613;443614;443615;443616;443617;443618;443619;443620;443621;443622;443623;443624;443625;443626;443627;443628;443629;443630;443631;443632;443633;443634;443635;443636;443637;443638 272332;272333;272334;272335;272336;272337;272338;272339;272340;272341;272342;272343 272332 12 YYPNHEAVDFYGHYK Unmodified 1901.8373 0.83729835 1956 Q46829 bglA 6-phospho-beta-glucosidase BglA yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 2 2 2 2 2 2 23.531 22.809 3;4 2.9666E-06 10159 B210125_24_HF_LS_IN_90_PD04_ID_nusG_Sup_rep01 100.42 100.37 700100000 42460000 56914000 42764000 0 0 0 63372000 65035000 59131000 0 0 0 65799000 68142000 60860000 0 0 0 58966000 53455000 63198000 0 0 0 23896 1956 23165 443639;443640;443641;443642;443643;443644;443645;443646;443647;443648;443649;443650;443651;443652;443653;443654;443655;443656;443657;443658;443659;443660;443661;443662 272344;272345;272346;272347;272348;272349;272350;272351;272352;272353;272354;272355;272356;272357;272358 272344 15 YYQEDAVR Unmodified 1042.472 0.47197413 193 P08956 hsdR Type I restriction enzyme EcoKI R protein yes yes 0 0 0 By matching By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 13.499 14.32 2 0.038802 4464 B210125_25_HF_LS_IN_90_PD04_ID_nusG_Sup_rep02 67.032 55.521 80842000 0 0 0 0 0 0 8407500 7536300 7215200 0 0 0 7968700 9198200 6217300 0 0 0 11481000 10838000 10869000 0 1110200 0 23897 193 23166 443663;443664;443665;443666;443667;443668;443669;443670;443671;443672 272359 272359 0 YYQGTPSPVK Unmodified 1138.5659 0.56587452 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 15.49 16.333 2 7.6498E-06 5558 B210127_11_HF_LS_IN_90_PD04_ID_yacL_Sup_rep01 155.1 151.53 14110000000 1603900000 1754200000 1478400000 2746700 2373900 1686100 889080000 990080000 874430000 0 0 0 984600000 752810000 751100000 0 0 0 1339800000 1302100000 1382900000 0 0 0 23898 179 23167 443673;443674;443675;443676;443677;443678;443679;443680;443681;443682;443683;443684;443685;443686;443687 272360;272361;272362;272363;272364;272365;272366;272367;272368;272369;272370;272371;272372 272363 13 YYQGTPSPVKHPELTDMVIFR Unmodified 2477.2413 0.24131626 179 P08200 icd Isocitrate dehydrogenase [NADP] yes yes 0 0 1 By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 2 2 2 1 2 2 1 1 2 2 2 38.918 36.923 3;4 0.00030047 12944 B210127_15_HF_LS_IN_90_PD04_ID_K12wt_eTEV_rep01 65.951 63.409 61909000 5393900 4784900 7570400 8378800 4588300 4948600 5000400 0 0 2437800 2808400 2064700 0 0 0 0 0 0 3964900 0 0 3223400 2607900 4136500 23899 179 23168 443688;443689;443690;443691;443692;443693;443694;443695;443696;443697;443698;443699;443700;443701;443702;443703;443704;443705;443706;443707;443708;443709 272373;272374;272375;272376 272373 4 YYSANLMK Unmodified 988.4688 0.46880301 110 P05458 ptrA Protease 3 yes yes 0 0 0 By matching By matching By matching By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1 1 1 20.799 21.196 2 0.054536 8485 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 58.819 47.991 56613000 5694800 5067200 0 0 0 0 4437600 0 0 0 0 0 5997000 4049400 5159700 0 0 0 8030400 9932100 8244500 0 0 0 23900 110 23169 443710;443711;443712;443713;443714;443715;443716;443717;443718 272377;272378;272379;272380 272377 4 YYSVIYNLIDEVK Unmodified 1617.829 0.82902508 297 P0A705 infB Translation initiation factor IF-2 yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 1 1 1 54.219 52.992 2;3 8.0454E-09 26143 B210125_26_HF_LS_IN_90_PD04_ID_nusG_Sup_rep03 164.43 157.41 762850000 100620000 85237000 102420000 5188000 3442100 6772700 40593000 29059000 28044000 18633000 11724000 7855500 51556000 37939000 44405000 8845600 42524000 8414900 43006000 37973000 37101000 4181500 4733800 2573600 23901 297 23170 443719;443720;443721;443722;443723;443724;443725;443726;443727;443728;443729;443730;443731;443732;443733;443734;443735;443736;443737;443738;443739;443740;443741;443742;443743;443744;443745;443746;443747 272381;272382;272383;272384;272385;272386;272387;272388;272389;272390;272391;272392;272393;272394;272395;272396;272397;272398;272399 272388 19 YYSYIEITR Unmodified 1206.5921 0.59208927 1839 P76235 yeaH UPF0229 protein YeaH yes yes 0 0 0 By MS/MS By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching By matching 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33.412 31.936 2 0.0027956 15135 B210127_19_HF_LS_IN_90_PD04_ID_K12wt_Sup_rep01 87.181 82.771 401940000 37975000 33896000 35961000 728680 542890 716610 38003000 34324000 36153000 0 0 0 26814000 25416000 20381000 0 0 0 33992000 37071000 39962000 0 0 0 23902 1839 23171 443748;443749;443750;443751;443752;443753;443754;443755;443756;443757;443758;443759;443760;443761;443762 272400 272400 0 YYWPHSR Unmodified 1007.4613 0.46134987 1046 P0C8J8 gatZ D-tagatose-1,6-bisphosphate aldolase subunit GatZ yes yes 0 0 0 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching By matching By matching By matching By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 2 2 2 1 1 1 1 1 1 1 1 2 2 2 1 1 16.574 17.155 2 0.0010429 6063 B210127_12_HF_LS_IN_90_PD04_ID_yacL_Sup_rep02 138.07 129.3 1322200000 71100000 102250000 103220000 0 3882500 3346200 177700000 185310000 175590000 16828000 15555000 8264500 79214000 71159000 54291000 4688500 563480 0 82023000 88431000 74189000 2387200 2151600 0 23903 1046 23172 443763;443764;443765;443766;443767;443768;443769;443770;443771;443772;443773;443774;443775;443776;443777;443778;443779;443780;443781;443782;443783;443784;443785;443786;443787;443788;443789;443790;443791 272401;272402;272403;272404;272405;272406;272407;272408;272409;272410;272411 272407 10